BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus
Liberibacter asiaticus str. psy62]
         (976 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 2008 bits (5203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 976/976 (100%), Positives = 976/976 (100%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH
Sbjct: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI
Sbjct: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV
Sbjct: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
           CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA
Sbjct: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE
Sbjct: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ
Sbjct: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT
Sbjct: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG
Sbjct: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE
Sbjct: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA
Sbjct: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI
Sbjct: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
           NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL
Sbjct: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM
Sbjct: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP
Sbjct: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT
Sbjct: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV
Sbjct: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960

Query: 961 PLKVNIKVSNNWQEEN 976
           PLKVNIKVSNNWQEEN
Sbjct: 961 PLKVNIKVSNNWQEEN 976


>gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 727

 Score = 1076 bits (2783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/733 (73%), Positives = 613/733 (83%), Gaps = 19/733 (2%)

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
           LRTDVPITIPL+HLILEDCNGP+LI+FLKALEFT+L  RVA   +CDA NIE   LD   
Sbjct: 3   LRTDVPITIPLDHLILEDCNGPQLITFLKALEFTRLTKRVAAFCNCDAENIESADLDSK- 61

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
                  I+ E  +  + K +Q ++LS+    I S+ +PQ  FLER + L+Q  I N SY
Sbjct: 62  -------IDIETSQPKSPKENQSATLSEN---IISKNSPQHFFLERTKLLTQSQIKNHSY 111

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
            +I N KD+++W+Q LE  GSASF IITDT+DAF+SKPI IA S L+Q+D +  K+ETI 
Sbjct: 112 IRIRNIKDLKKWLQILENTGSASFTIITDTVDAFNSKPIGIAFSILNQEDASLLKIETIV 171

Query: 429 IDL-----SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           IDL     S      S  K+  T+EILSYLKK FENEH LKIGHNIKYDKLVL RYGI +
Sbjct: 172 IDLPLIIDSSLEENMSPEKSISTEEILSYLKKIFENEHLLKIGHNIKYDKLVLQRYGIII 231

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           RGFEDIMLMSYVLDSGR SHDIA+IA+KWL Y   TRKE+LK+ K SI ID+IS+S++QE
Sbjct: 232 RGFEDIMLMSYVLDSGRYSHDIANIAKKWLFYDLITRKEMLKTGKRSISIDQISNSRIQE 291

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           + +E SNVILQLWLLLR KLI EKLLHVYERLDKPMID+V+QME TGIQID+ LL QVS+
Sbjct: 292 YVVEKSNVILQLWLLLRAKLIAEKLLHVYERLDKPMIDIVAQMETTGIQIDRQLLAQVSS 351

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EISK+LL LEE I++L+GEKFN+SSPKQLGDILFTKLKFP G KTK GQWKTTAQDLEQI
Sbjct: 352 EISKDLLCLEEKIHNLAGEKFNISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQDLEQI 411

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
           NC DN +I++ILEWR+ SKIKSTYADSLPNHIN+RTQRVHTFYSLASTMTGRLASLEPNL
Sbjct: 412 NCQDNILIEHILEWRRFSKIKSTYADSLPNHINQRTQRVHTFYSLASTMTGRLASLEPNL 471

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP+KT+LG+KIRRAFI+PPTKKLISADYSQIELRILAH+A+I PLYQ F+NSLDIH +
Sbjct: 472 QNIPVKTNLGKKIRRAFIAPPTKKLISADYSQIELRILAHVAQINPLYQAFKNSLDIHTL 531

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           VA+EIFGV IE+VS  MR+HAKTINFSIIYGISPFRLA QL+I RSEA DYI+RYF RFP
Sbjct: 532 VASEIFGVKIEEVSSHMRQHAKTINFSIIYGISPFRLANQLKIKRSEATDYIQRYFDRFP 591

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GIHEYIEKTKNF R+N YVETIFGRRI+YDEINSPK SIRN+NERAAINAPIQGSAADIT
Sbjct: 592 GIHEYIEKTKNFARKNSYVETIFGRRIYYDEINSPKVSIRNLNERAAINAPIQGSAADIT 651

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           RRAMI VHKS+E HKL+TKMLLQIHDELVFE PEEEI   + II  SME ACLPKINLRV
Sbjct: 652 RRAMILVHKSIECHKLSTKMLLQIHDELVFEAPEEEIEQVTNIITESMENACLPKINLRV 711

Query: 961 PLKVNIKVSNNWQ 973
           PLKV+IKVS+NW+
Sbjct: 712 PLKVDIKVSDNWE 724


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
          Length = 998

 Score = 1025 bits (2650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/999 (50%), Positives = 681/999 (68%), Gaps = 28/999 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPVNA++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNE+Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRNELYDLYKANRSAPPEDLVPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTIIS+DKDLMQLV+    +YD +K+++I +  VI+KWG+ PE
Sbjct: 121 DDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVIEKWGVGPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRENI+  A
Sbjct: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRENIIANA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E ARLSR+LV LRTDVP+   LE L+LE  NGP+LI+FLKA+EFT L  RVA   D DA+
Sbjct: 241 ELARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEATDSDAS 300

Query: 298 NIEPVVL------DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            I+P  +      D +  +    A     D          S+++     I    TP  L 
Sbjct: 301 AIDPANVPVQWGADAHGPDLDAPAAAMAGDVSAEGNNRPASAVAPAKRMIGEGSTPADLT 360

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             R    +   I+  +YT I +   +  W+      G  +F   T ++D   ++ +  ++
Sbjct: 361 TARQALFAATKIDTTAYTAIRDIATLDLWIAAAREAGVVAFDTETTSLDPMQAELVGFSL 420

Query: 412 STLDQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLT------------KEILSYLKKFFE 458
           +  D  KD +   +   ++ L   T +  +G +  +             E L  LK   E
Sbjct: 421 AIADNGKDASGTDIRAAYVPL---THKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLLE 477

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-- 516
           +E  LK+  N+KYD L++ R+G+ MR F+D ML+SYVL++G+++H + +++++WL +T  
Sbjct: 478 DEAVLKVAQNLKYDYLLMKRHGVVMRSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPI 537

Query: 517 -RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
             K++  S KSSI  D ++  +   +A E+++V L+LW+ L+P+L+ E+L  VYERL++P
Sbjct: 538 AYKDVTGSGKSSITFDFVNIDKATAYAAEDADVTLRLWMALKPRLVSERLTKVYERLERP 597

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           ++ V++ ME  GI +D+ +L ++S E+++   S EE IY+L+GE+FN+ SPKQLGDILF 
Sbjct: 598 LVPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEIYELAGERFNIGSPKQLGDILFG 657

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           ++  P G+KTKTGQW T+AQ LE +      + + I++WRQL+K+KSTY D+LP++I+  
Sbjct: 658 RMGLPGGSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPE 717

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T+RVHT Y+LAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KL+SADYSQIEL
Sbjct: 718 TKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIEL 777

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LAH+A I  L   FEN +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F
Sbjct: 778 RVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF 837

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA QL I RSEA DYIK+YF RFPGI +Y+E TK F R+NGYVETIFGRR HY EI S 
Sbjct: 838 GLANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSS 897

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             S++  NERAAINAPIQGSAADI RRAMI +  +LE  KL+ +MLLQ+HDEL+FEV E 
Sbjct: 898 NPSVKAFNERAAINAPIQGSAADIIRRAMIRIEPALEAEKLSARMLLQVHDELIFEVEEA 957

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EI     ++V  ME A +P I++RVPLKV+ + ++NW E
Sbjct: 958 EIEKTLPVVVSVMEDAAMPAISMRVPLKVDARAADNWDE 996


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score = 1024 bits (2648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/994 (49%), Positives = 681/994 (68%), Gaps = 24/994 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNM+WKLL  +R  S+   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPALTRKSDGLPVGAVSGFCNMMWKLLTEARDTSVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY + TFR ++YP+YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSSKTFRKDLYPEYKANRSAPPEDLVPQFGLIRQATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTI+S+DKDLMQLV+    +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDIIATYARAAEAIGADVTIVSSDKDLMQLVTANVHMYDSMKDKQIGIPDVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DNIPGIPGIG KTAA LL+EYG+L+ ++  AS IKQ KRRENIL  A
Sbjct: 181 KMIDLQSLTGDSTDNIPGIPGIGPKTAAQLLEEYGDLDTLMARASEIKQNKRRENILAGA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  +LSR+LV LRTDVP+ +PL+ L+LE  +GP+L++FLKA+EFT L  RVA   DCDA 
Sbjct: 241 ELVKLSRQLVTLRTDVPLDMPLDALMLEKQDGPKLVAFLKAMEFTSLTRRVADNCDCDAG 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKT---SQFSSLSDQTSKINSEQTPQKLFLER 354
            IEP  + +   E    A   ++D     +T    Q +  + Q++K     TP  L   R
Sbjct: 301 AIEPATISV---EWGASARGPDLDAGAAAQTPASGQEAGPTAQSAKAEG-ATPADLAAAR 356

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                  PI+  +Y  I +   ++ W+      G  +F   T ++D   +  + ++++  
Sbjct: 357 QSAFGGQPIDRSAYVTIRDLPTLEGWIAAAREAGFVAFDTETTSLDPMQADLVGVSLALQ 416

Query: 415 DQK-DDTSFKVETIFIDLSVHTSQD---STGKNTLTKEI-----LSYLKKFFENEHFLKI 465
           D      +  +   ++ L   T +D   S G      +I     L+ LK   E+   LK+
Sbjct: 417 DNAASPGAATIRAAYVPLGHKTGRDDLFSDGLKLAENQIPMDAALTALKGLLEDASVLKV 476

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILK 522
             N+KYD LV+ R+GI +RGF+D ML+SYVL++G  +H + S++++WL +T    KE+  
Sbjct: 477 AQNLKYDYLVMKRHGIVIRGFDDTMLLSYVLEAGVGAHGMDSLSERWLGHTPIPYKEVAG 536

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           S KS +  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P++ V++ 
Sbjct: 537 SGKSLVTFDLVDIDKATAYAAEDADVTLRLWLVLKPRLAAVGLARVYERLERPLVPVLAD 596

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI ID+ +L ++S E+++   + E+ IY+L+GE+FN+ SPKQLGDILF ++  P G
Sbjct: 597 MEERGITIDRQILSRLSGELAQKAAAFEDEIYELAGERFNVGSPKQLGDILFGRMNLPGG 656

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KTKTGQW T+AQ LE +     P+ + I++WRQL+K+KSTY D+LP +++ +T+RVHT 
Sbjct: 657 SKTKTGQWSTSAQVLEDLAAQGEPLPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTS 716

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           YS+A+T TGRL+S EPNLQNIP++T  G+KIR AFIS P  KL+SADYSQIELR+LAH+A
Sbjct: 717 YSMAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVA 776

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
            I  L Q F + +DIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F LA QL 
Sbjct: 777 DIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRAKAINFGIIYGISAFGLANQLS 836

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R+EA +YIK+YF RFPGI +Y+E TK FVR++GYVETIFGRR HY EI S   S+R  
Sbjct: 837 IERAEAGEYIKKYFERFPGIKDYMESTKAFVREHGYVETIFGRRAHYPEIKSSNPSMRAF 896

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEEITTA 940
           NERAAINAPIQGSAAD+ RRAM+ V  +L    L   T+MLLQ+HDEL+FEV +E I  A
Sbjct: 897 NERAAINAPIQGSAADVIRRAMVQVEPALAKAGLGEKTRMLLQVHDELIFEVEDEAIEAA 956

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +IV +ME A +P I +RVPLKV+ + ++NW E
Sbjct: 957 LPVIVSTMENAAMPAIAMRVPLKVDARAADNWDE 990


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/996 (49%), Positives = 681/996 (68%), Gaps = 25/996 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPVNA++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNE+Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRNELYDLYKANRTAPPEDLVPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTIIS+DKDLMQLV+    +YD +K+++I +  V++KWG+ PE
Sbjct: 121 DDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVVEKWGVAPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRENI+  A
Sbjct: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRENIIANA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + ARLSR+LV LRTDVP+   LE L+LE  NGP+LI+FLKA+EFT L  RVA   D DA+
Sbjct: 241 DLARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEATDSDAS 300

Query: 298 NIEP--VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT-PQKLFLER 354
            IE   V +      +               KT+  +S +    K+  E + P  L   R
Sbjct: 301 AIEAANVPVQWGADAHGPDLDAAPAVAAADDKTAVPASTNAPARKVTGEGSAPTDLATAR 360

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
               S   I+  +YT I +  ++ +WV      G  +F   T ++D   ++ +  +++  
Sbjct: 361 QTVFSAAKIDTTAYTTIRDLAELDRWVAAARETGVVAFDTETTSLDPMQAELVGFSLAIA 420

Query: 415 DQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLT------------KEILSYLKKFFENEH 461
           D  KD +   +   ++ L   T +  +G +  +             E L+ LK   E+E 
Sbjct: 421 DNGKDASGTDIRAAYVPL---THKTGSGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEA 477

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518
            LKI  N+KYD L++ R+G+ M+ F+D ML+SYVL++G+++H + +++++WL +T    K
Sbjct: 478 VLKIAQNLKYDYLLMKRHGVVMQSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYK 537

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           ++  S KSSI  D +   +   +A E+++V L+LW++L+P+L  E+L  VYERL++P++ 
Sbjct: 538 DVAGSGKSSITFDFVDIDKATAYAAEDADVTLRLWMVLKPRLAAERLTSVYERLERPLVP 597

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V++ ME  GI +D+ +L ++S E+++   + EE +Y L+GE+FN+ SPKQLGDILF ++ 
Sbjct: 598 VLAHMEERGITVDRQILSRLSGELAQKAAAFEEEVYQLAGERFNIGSPKQLGDILFGRMG 657

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P G+KTKTGQW T+AQ LE +      + + I++WRQL+K+KSTY D+LP +++ +T+R
Sbjct: 658 LPGGSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPGYVHPQTKR 717

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y+LAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KL+SADYSQIELR+L
Sbjct: 718 VHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVL 777

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A I  L   FEN +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA
Sbjct: 778 AHVADIPQLRSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLA 837

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I RSEA +YIK+YF RFPGI +Y+E TK F R+NGYVETIFGRR HY EI S   S
Sbjct: 838 NQLSIARSEAGEYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPS 897

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           ++  NERAAINAPIQGSAADI RRAM+ +   LE  KL+ +MLLQ+HDEL+FEV E EI 
Sbjct: 898 MKAFNERAAINAPIQGSAADIIRRAMVRIEPVLEAEKLSARMLLQVHDELIFEVEEGEIE 957

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               I+V  ME A +P I++RVPLKV+ + ++NW E
Sbjct: 958 KTLPIVVSVMENAAMPAISMRVPLKVDARAADNWDE 993


>gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/986 (48%), Positives = 681/986 (69%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +A ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMAPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+++ I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13]
 gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/987 (49%), Positives = 681/987 (68%), Gaps = 24/987 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQ 356
           ++EP  ++   T+    A   ++D       +    LS  T+ + +   TP+ L   R  
Sbjct: 301 SVEPCHVE---TDWGADAHGPDVDVPEKADAAASQPLSAPTAAEPDQGYTPKALAERRAV 357

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + +   I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    
Sbjct: 358 QATAQKIDTSAYVCIRDIATLEQWLAEAAETGVLAFDTETTSLDPMQAELVGFSLALAPG 417

Query: 417 KDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIK 470
           K          ++ L   + + D  G   +  +I     L+ LK   E+   LKI  N+K
Sbjct: 418 K--------AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKHVLEDASILKIAQNMK 469

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527
           YD LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS+
Sbjct: 470 YDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMNPLSERWLGHTPIAYKDVAGSGKSA 529

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +  D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  G
Sbjct: 530 VTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERG 589

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKT
Sbjct: 590 IAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKT 649

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AS
Sbjct: 650 GQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAS 709

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L
Sbjct: 710 TSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQL 769

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR E
Sbjct: 770 KQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREE 829

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAA
Sbjct: 830 AGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAA 889

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++ H 
Sbjct: 890 INAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRHV 949

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A +P ++L VPL+V+ + ++NW E
Sbjct: 950 MENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1]
          Length = 978

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/987 (48%), Positives = 682/987 (69%), Gaps = 24/987 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ + L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDVDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQ 356
           ++EP  ++   T+    A   ++D       +    LS  T+ + +   TP+ L   R  
Sbjct: 301 SVEPCHVE---TDWGADAHGPDVDVPEKADAAASQPLSAPTAAEPDQGYTPKALAERRAA 357

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + +   I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    
Sbjct: 358 QATAQKIDTSAYVCIRDIATLEQWLAEAAETGVLAFDTETTSLDPMQAELVGFSLALAPG 417

Query: 417 KDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIK 470
           K          ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+K
Sbjct: 418 K--------AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKRVLEDASILKIAQNMK 469

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527
           YD LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS+
Sbjct: 470 YDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSA 529

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +  D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  G
Sbjct: 530 VTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERG 589

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I +D+ +L ++S ++++   + E+ IY L+GEKF +SSPKQLGDILF K+  P  +KTKT
Sbjct: 590 IAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTISSPKQLGDILFGKMGLPGASKTKT 649

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AS
Sbjct: 650 GQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAS 709

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L
Sbjct: 710 TSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQL 769

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR E
Sbjct: 770 KQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREE 829

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAA
Sbjct: 830 AGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAA 889

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   
Sbjct: 890 INAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRV 949

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A +P ++L VPL+V+ + ++NW E
Sbjct: 950 MENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/987 (49%), Positives = 681/987 (68%), Gaps = 24/987 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQ 356
           ++EP  ++   T+    A   ++D       +    LS  T+ + +   TP+ L   R  
Sbjct: 317 SVEPCHVE---TDWGADAHGPDVDVPEKADAAASQPLSAPTAAEPDQGYTPKALAERRAV 373

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + +   I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    
Sbjct: 374 QATAQKIDTSAYVCIRDIATLEQWLAEAAETGVLAFDTETTSLDPMQAELVGFSLALAPG 433

Query: 417 KDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIK 470
           K          ++ L   + + D  G   +  +I     L+ LK   E+   LKI  N+K
Sbjct: 434 K--------AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKHVLEDASILKIAQNMK 485

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527
           YD LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS+
Sbjct: 486 YDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMNPLSERWLGHTPIAYKDVAGSGKSA 545

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +  D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  G
Sbjct: 546 VTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERG 605

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKT
Sbjct: 606 IAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKT 665

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AS
Sbjct: 666 GQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAS 725

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L
Sbjct: 726 TSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQL 785

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR E
Sbjct: 786 KQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREE 845

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAA
Sbjct: 846 AGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAA 905

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++ H 
Sbjct: 906 INAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRHV 965

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A +P ++L VPL+V+ + ++NW E
Sbjct: 966 MENAAMPAVSLAVPLRVDARAAHNWDE 992


>gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419]
 gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419]
          Length = 1004

 Score = 1006 bits (2600), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1002 (48%), Positives = 678/1002 (67%), Gaps = 28/1002 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
            M+  +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R  S+   
Sbjct: 1    MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60

Query: 59   -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +HFAVIFDY + TFRN +Y  YKANR   PE L+PQ  L+R AT+AF +P IE +G+EA
Sbjct: 61   PTHFAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +AE+ G  VTI+S+DKDLMQLV+P   +YD++K+++I +  VI+KWG+PPE
Sbjct: 121  DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRE+I+  A
Sbjct: 181  KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              ARLSR+LV L+ D P+ +PL+  +L+  +GP+LI+FLKA+EFT L  RVA   D DA 
Sbjct: 241  NLARLSRELVTLKKDTPLDVPLDDFMLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300

Query: 298  NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKT----SQFSSLSDQTSKIN 342
            +IEP  +           D++  E  G     +       +     +  S LS       
Sbjct: 301  SIEPAHVPVEWGTEARGPDLDVGEAGGPPPSPQSSSAAPPRGNAARAAVSFLSPGQDADA 360

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  TP  L   R    +  P ++ +Y  I +   +++W+      G   F     + DA 
Sbjct: 361  TGATPADLAEARAAYFASAPFDHSAYITIRDLASLERWIADAREAGLVGFGTQATSSDAM 420

Query: 403  HSKPIAIAISTLDQKDDTSF-KVETIFIDLS-VHTSQDSTGKNTL-----TKEILSYLKK 455
             +  +  +++  D  +D S  ++   ++ L+  + + D  G   +      +E LS LK+
Sbjct: 421  RADLVGFSLAIADYANDPSGSRIRAAYVPLAHKNGTGDLLGGGHIDNQIPAREALSRLKE 480

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+   LK+  N+KY  LV+ R+G++M+GF+D ML+SYVLD+G  +H + S+A++WL +
Sbjct: 481  LLEDPSILKVAQNLKYGYLVMKRHGVTMQGFDDTMLISYVLDAGNGAHGMESLAERWLGH 540

Query: 516  T---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            T    K I  S +SS+ ID +   +   ++ E++++ L+LW +L+P+L    L  VYERL
Sbjct: 541  TPIASKGITGSGRSSLTIDFVDIDKAAAYSAEDADIALRLWHVLKPRLTARGLTRVYERL 600

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P+I V++ ME  GI +D+ +L ++S E+++   +LE+ IY L+GE F + SPKQLGDI
Sbjct: 601  ERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDI 660

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF KL  P G+KTKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  +
Sbjct: 661  LFGKLGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFV 720

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            +  T+RVHT ++LA+T TGRL+S +PNLQNIPI+T  G+KIR AF++ P  KL+SADYSQ
Sbjct: 721  HPETKRVHTCFALAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQ 780

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+LAH+A I  L Q F + +DIH M A+E+FGV ++ +  ++RR AK INF IIYGI
Sbjct: 781  IELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINFGIIYGI 840

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY +I
Sbjct: 841  SAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKTFARENGYVETIFGRRAHYPDI 900

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             S   S+R  NERA+INAPIQGSAADI RRAM+ +  +LE  KL+ +MLLQ+HDEL+FEV
Sbjct: 901  RSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEV 960

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             E EI     +IV  ME A +P +++RVPLKV+ + ++NW E
Sbjct: 961  EEGEIERTIPVIVSVMENAAMPALDMRVPLKVDARAAHNWDE 1002


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
           polymerase, family A:5'-3' exonuclease:3'-5'
           exonuclease:Hel [Brucella melitensis biovar Abortus
           2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
          Length = 978

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/986 (48%), Positives = 680/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+++ I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/986 (48%), Positives = 680/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+++ I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 667 QWSTSAQVLEDLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 786

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAI 906

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1001 (49%), Positives = 675/1001 (67%), Gaps = 30/1001 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DG+PV A++GFCNMLWKLL ++R  S+   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGVPVGAVSGFCNMLWKLLTSARDTSVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR +IY  YKANR   PE L+PQ  L+R AT+AF +P IE  GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKDIYDAYKANRSAPPEELIPQFGLIRQATRAFNLPCIETDGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTIIS+DKDLMQLV+P   +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDIIATYARQAEATGADVTIISSDKDLMQLVTPMVHMYDSMKDKQIGIPDVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQALTGDS+DN+PGIPGIG KTAA LL+ +G+L+ +L  A  IKQ+KRRENI+  A
Sbjct: 181 KMIDLQALTGDSVDNVPGIPGIGPKTAAQLLETFGDLDTLLARAGEIKQEKRRENIIANA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+SR+LV LRTDVP+ +PL+ L+LE  NGP+L+ FLKA+EFT L  RVA   +CD  
Sbjct: 241 DLARISRQLVTLRTDVPLELPLDALVLEPQNGPKLVGFLKAMEFTSLTRRVAEACNCDPT 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT----------- 346
            IEP   D+N  E    A   ++D    ++     +++ + + + +              
Sbjct: 301 AIEPS--DVNV-EWGDTAHGPDLDVGDNVELVAGGTVAAEGASVPAPAVKPRVGVEGLTE 357

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P  L   R    +  PI++  Y  I +   + +W+      G  +F   T ++D   ++ 
Sbjct: 358 PADLTKARAASFATAPIDHSKYVTIRDVGTLDRWIADARETGIVAFDTETTSLDVMQAEI 417

Query: 407 IAIAISTLDQKDDTS-FKVETIFIDLS-----VHTSQDSTGKNTLT-KEILSYLKKFFEN 459
           +  +++  D K+D S   +   ++ L+               N +  ++ L  LK   E+
Sbjct: 418 VGFSLAIADNKNDPSGASIRAAYVPLNHKNGVGDLLGGGLADNQIPLRDALPRLKALLED 477

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSG-RSSHDIASIAQKWLSY--- 515
              LKI  N+KYD L++ RYGI  +GF+D ML+SYVLD G  ++H + S++++WL +   
Sbjct: 478 TSVLKIAQNLKYDYLLMKRYGIETKGFDDTMLLSYVLDGGANATHGMDSLSERWLGHKPI 537

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
             K++  S KS+I  D +   +   +A E+++V L+LWL+L+P+L  EKL  VYERL++P
Sbjct: 538 AYKDVAGSGKSNITFDLVDIDRATAYAAEDADVTLRLWLVLKPRLAAEKLATVYERLERP 597

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           ++ V++ ME  GI ID+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF 
Sbjct: 598 LVPVLAHMEERGITIDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFG 657

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+    G+KTKTGQW T+AQ LE +      + + I++WRQL+K+KSTY D+LP +++  
Sbjct: 658 KMGLAGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPE 717

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T+RVHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIEL
Sbjct: 718 TKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIEL 777

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LAH+A I  L Q F + +DIH M A+E+FGV IE +  ++RR AK INF IIYGIS F
Sbjct: 778 RVLAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAF 837

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA QL I RSEA DYIKRYF RFPGI +Y+E TK   R  GYVETIFGRR+H+ EI S 
Sbjct: 838 GLANQLSIERSEAGDYIKRYFERFPGIRDYMESTKATARDKGYVETIFGRRVHFPEIRSS 897

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVP 933
             S+R  NERA+INAPIQGSAAD+ RRAMI +  +L D  L    +MLLQ+HDEL+FEV 
Sbjct: 898 NPSVRAFNERASINAPIQGSAADVIRRAMIKMEPALADAGLGDRVRMLLQVHDELIFEVE 957

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + ++  ++ +IV  ME A +P +N+ VPLKV+ + +NNW E
Sbjct: 958 DADVERSTPVIVSVMENAAMPAVNMSVPLKVDARAANNWDE 998


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/987 (48%), Positives = 680/987 (68%), Gaps = 24/987 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ + L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDVDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQ 356
           ++EP  ++   T+    A   ++D       +    LS  T+    +  TP+ L   R  
Sbjct: 301 SVEPCHVE---TDWGADAHGPDVDVPEKADAAASQPLSAPTAAGPDQGYTPKALAERRAA 357

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + +   I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    
Sbjct: 358 QATAQKIDTSAYVCIRDIATLEQWLAEATETGVLAFDTETTSLDPMQAELVGFSLALAPG 417

Query: 417 KDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIK 470
           K          ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+K
Sbjct: 418 K--------AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKRVLEDASILKIAQNMK 469

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527
           YD LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS+
Sbjct: 470 YDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSA 529

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +  D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  G
Sbjct: 530 VTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERG 589

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKT
Sbjct: 590 IAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKT 649

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AS
Sbjct: 650 GQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAS 709

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L
Sbjct: 710 TSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQL 769

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR E
Sbjct: 770 KQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREE 829

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAA
Sbjct: 830 AGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAA 889

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   
Sbjct: 890 INAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRV 949

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A +P ++L VPL+V+ + ++NW E
Sbjct: 950 MENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELRILAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRILAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 667 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELRILAH+A I  L 
Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRILAHVADIAQLK 786

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 906

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/989 (48%), Positives = 681/989 (68%), Gaps = 30/989 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNEIYP+YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRNEIYPEYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  IAE+ G  VTI+S+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARIAEQAGGDVTIVSSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  ++SR+LV L+TDVP+ + L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKISRELVTLKTDVPLDVDLDSLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDIN---TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            +EP  ++ +         + +  + D   +  TS  ++ SDQ        TP+ L  +R
Sbjct: 301 AVEPCHVETDWGADAHGPDVDVPAKADNAASQPTSAVAA-SDQG------YTPKALAEKR 353

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
             + +   I+  +YT I +   ++ W+ +    G  +F   T ++D   ++ +  +++  
Sbjct: 354 ATEAAAQTIDTSAYTCIRDIATLKLWLAEAVETGVLAFDTETTSLDPMQAELVGFSLALA 413

Query: 415 DQKDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHN 468
             +          +I L   + + D  G   +  +I     L+ LK   E+   LKI  N
Sbjct: 414 PGR--------AAYIPLQHKSGAGDLLGGGMVEGQIPLDEALAALKIVLEDASVLKIAQN 465

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRK 525
           +KYD LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S K
Sbjct: 466 MKYDWLVMRRHGINTVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIPYKDVAGSGK 525

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           S++  D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV++ ME 
Sbjct: 526 SAVSFDMVDLDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEE 585

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI +D+ +L ++S ++++   + E+ IY+L+GE+FN+ SPKQLGDILF K+     +KT
Sbjct: 586 RGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGERFNIGSPKQLGDILFGKMSLSGASKT 645

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTGQW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN  T+RVHT Y++
Sbjct: 646 KTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSYAM 705

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           AST TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KL+SADYSQIELR+LAH+A I 
Sbjct: 706 ASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRVLAHVADIA 765

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR
Sbjct: 766 QLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPR 825

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI+ YF RFPGI +Y+E TK F R+NGYVETIFGRR HY +I +    +R  NER
Sbjct: 826 EEAGQYIRTYFERFPGIKDYMEATKAFARENGYVETIFGRRAHYPDIRASNPQVRAFNER 885

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAPIQGSAADI RRAMI +  +L +  LA +MLLQ+HDEL+FEVP+ E+     ++ 
Sbjct: 886 AAINAPIQGSAADIIRRAMIRMEDALAEQNLAARMLLQVHDELIFEVPDNEVEKTIPVVR 945

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           H ME A +P ++L VPL V+ + ++NW E
Sbjct: 946 HIMENAAMPAVSLAVPLHVDARAAHNWDE 974


>gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
          Length = 978

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 667 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 786

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 906

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/986 (48%), Positives = 678/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCYVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++ +   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLVQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
          Length = 978

 Score = 1002 bits (2590), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTDSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1]
          Length = 978

 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDPSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDPSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 667 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 786

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 906

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992


>gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94]
          Length = 978

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TD+P+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDMPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TD+P+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDMPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 667 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 786

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 906

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/986 (48%), Positives = 678/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKA R   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKATRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 667 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 786

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 906

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score = 1000 bits (2586), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/986 (48%), Positives = 678/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G   H +  ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGRHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 978

 Score = 1000 bits (2586), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/986 (48%), Positives = 678/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKA R   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKATRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/986 (48%), Positives = 677/986 (68%), Gaps = 22/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EI PDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEINPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D    + +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQGELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
          Length = 979

 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/986 (48%), Positives = 677/986 (68%), Gaps = 21/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ +Q+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDVQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        +     +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAAASQLLSAPTAAEPDQGYTPKALAEGRAAQ 359

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 360 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 419

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 420 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 471

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 472 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 531

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 532 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 591

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 592 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 651

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 652 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 711

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 712 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 771

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 772 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 831

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 832 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 891

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 892 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 951

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 952 ENAAMPAVSLAVPLRVDARAAHNWDE 977


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score =  997 bits (2578), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/986 (48%), Positives = 677/986 (68%), Gaps = 21/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ +Q+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDVQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        +     +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAAASQLLSAPTAAEPDQGYTPKALAEGRAAQ 375

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 376 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 435

Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     ++ L   + + D  G   +  +I     L+ LK+  E+   LKI  N+KY
Sbjct: 436 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 487

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++
Sbjct: 488 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 547

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI
Sbjct: 548 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 607

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTG
Sbjct: 608 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 667

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST
Sbjct: 668 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 727

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 728 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 787

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 788 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 847

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAI
Sbjct: 848 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 907

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   M
Sbjct: 908 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 967

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V+ + ++NW E
Sbjct: 968 ENAAMPAVSLAVPLRVDARAAHNWDE 993


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
          Length = 985

 Score =  994 bits (2571), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/991 (48%), Positives = 675/991 (68%), Gaps = 25/991 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNE+YPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRNELYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  IA + G  VTI+S+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARIAAEAGGDVTIVSSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+ DVP+ + L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKNDVPLDVDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTS-----QFSSLSDQTSKINSEQTPQKLFL 352
           ++EP  ++     +   A     D D   K          + +   S   +  TP  L  
Sbjct: 301 SVEPSHVETGWGADASTADLHGPDMDIPPKADGEVTVVAVTATVTVSTTEAGYTPTALAD 360

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            R +      ++  +YT I +   ++ W+ +    G  +F   T ++D   ++ +  +++
Sbjct: 361 RRAEAARAQKVDTSAYTCIRDIATLKLWLAEAVETGLLAFDTETTSVDPMQAELVGFSLA 420

Query: 413 TLDQKDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIG 466
               +          +I L   + + D  G  T+  +I     L+ LK   E+   LKI 
Sbjct: 421 LAPGR--------AAYIPLQHKSGAGDLLGGGTVEGQIPLGEALAALKTVLEDASVLKIA 472

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKS 523
            N+KYD L++ RYGI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S
Sbjct: 473 QNMKYDWLIMRRYGINTVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGS 532

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            KSS+  D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++M
Sbjct: 533 GKSSVTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARM 592

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  GI +D+ +L ++S ++++   + E+ IY+L+GE+F + SPKQLGDILF K+  P  +
Sbjct: 593 EERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGERFTIGSPKQLGDILFGKMGLPGAS 652

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTGQW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN  T+RVHT Y
Sbjct: 653 KTKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPATRRVHTCY 712

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           ++AST TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A 
Sbjct: 713 AMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVAD 772

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
           I  L Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL I
Sbjct: 773 IAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSI 832

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           PR EA  YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    IR  N
Sbjct: 833 PREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQIRAFN 892

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAAINAPIQGSAADI RRAMI +  +L   KLA +MLLQ+HDEL+FEVPE E+     +
Sbjct: 893 ERAAINAPIQGSAADIIRRAMIRMEDALAKEKLAARMLLQVHDELIFEVPENEVEKTVSV 952

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + H ME A +P ++L VPL V+ + ++NW E
Sbjct: 953 VRHVMENAAMPAVSLAVPLHVDARAAHNWDE 983


>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
 gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
          Length = 1040

 Score =  991 bits (2561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1003 (48%), Positives = 675/1003 (67%), Gaps = 30/1003 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
            M+  +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R  S+   
Sbjct: 37   MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 96

Query: 59   -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +HFAVIFDY + TFRN +Y  YKANR   PE L+PQ  L+R AT+AF +P IE +G+EA
Sbjct: 97   PTHFAVIFDYSSKTFRNALYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 156

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +AE+ G  VTI+S+DKDLMQLV+P   +YD++K+++I I  VI+KWG+PPE
Sbjct: 157  DDLIATYARLAEEAGAGVTIVSSDKDLMQLVTPNVSMYDSMKDKQIAIPDVIEKWGVPPE 216

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRE I+  A
Sbjct: 217  KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLSRAGEIKQQKRREAIIANA 276

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            E ARLSR+LV L+ D P+ +PLE L L+  +GP+LI+FLK +EFT L  RVA   D DA 
Sbjct: 277  ELARLSRELVTLKKDTPLDVPLEDLRLDSQDGPKLIAFLKTMEFTTLTRRVAAATDTDAE 336

Query: 298  NIEPVVL-----------DINTTENKGI----AIETEIDRDTTIKTSQFSSLSDQTSKIN 342
             +EP  +           D++  E  G     A  +          +  S L+ +     
Sbjct: 337  AVEPAPVPVEWGAAAHGPDLDVGEAAGPPPTPASSSAAPPRGNAAKAAVSFLTGKGDADA 396

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  TPQ L   R +  ++ P ++ +Y  I +   + +W+ +    G   F   T ++D  
Sbjct: 397  TGATPQGLAQARAEHFAKAPFDHSAYATIRDLATLDRWIAEAREAGLFGFDTETTSLDPM 456

Query: 403  HSKPIAIAISTLDQKDD-TSFKVETIFIDLSVHTSQDSTGKNTLT-------KEILSYLK 454
             +    ++++  D  +D     +   ++ L +H +                 +E LS LK
Sbjct: 457  RADLCGVSLAIADYSNDPMGGTIRAAYVPL-IHKNGVGDLLGGGLVENQVPMREALSRLK 515

Query: 455  KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
               E+   LK+  N+KYD LV+ R+GI+M+ F+D MLMSYV+D+G   H + S++++WL 
Sbjct: 516  NLLEDPSVLKVAQNLKYDYLVMKRHGIAMQSFDDTMLMSYVVDAGNGMHGMDSLSERWLG 575

Query: 515  YT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +T    K+I  + K+S+  D +   +   +A E+++V L+LW +L+P+L  + L  VYER
Sbjct: 576  HTPIPYKDIAGTGKASVSFDFVDIDKATTYAAEDADVTLRLWHVLKPRLAAKGLTRVYER 635

Query: 572  LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
            L++P+I V++ ME  GI +D+ +L ++S E+++   +LE+ IY L+GE F + SPKQLGD
Sbjct: 636  LERPLIAVLAHMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGD 695

Query: 632  ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
            ILF K+  P G+KTKTGQW T+A  LE +    + + + I++WRQL+K+KSTY D+LP +
Sbjct: 696  ILFGKMGLPGGSKTKTGQWSTSASVLEDLAAVGHELPRKIVDWRQLTKLKSTYTDALPGY 755

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
            ++  T+RVHT Y+LA+T TGRL+S EPNLQNIP++T  G++IR AFI+ P  KL+SADYS
Sbjct: 756  VHPETKRVHTGYALAATTTGRLSSSEPNLQNIPVRTAEGRRIRTAFIATPGHKLVSADYS 815

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            QIELR+LAH+A I  L Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYG
Sbjct: 816  QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYG 875

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            IS F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R++GYVETIFGRR HY +
Sbjct: 876  ISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFAREHGYVETIFGRRAHYPD 935

Query: 872  INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            I S   S+R  NERA+INAPIQGSAADI RRAM+ +  +L++ KLA +MLLQ+HDEL+FE
Sbjct: 936  IRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALDEAKLAARMLLQVHDELIFE 995

Query: 932  VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            V E EI     +IV  ME A +P +++RVPLKV+ + + NW E
Sbjct: 996  VEEGEIERTLPVIVSVMENAAMPALDMRVPLKVDARAAQNWDE 1038


>gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
          Length = 1004

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1005 (48%), Positives = 677/1005 (67%), Gaps = 30/1005 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
            M+  +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R  S+   
Sbjct: 1    MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60

Query: 59   -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY + TFRN +Y  YKANR   PE L+PQ  L+R AT+AF +P IE +G+EA
Sbjct: 61   PTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +AE+ G  VTI+S+DKDLMQLV+P   +YD++K+++I +  VI+KWG+PPE
Sbjct: 121  DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRE+I+  A
Sbjct: 181  KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR+LV L+ D P+ +P E   L+  +GP+LI+FLKA+EFT L  RVA   D DA 
Sbjct: 241  DLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300

Query: 298  NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKT----SQFSSLSDQTSKIN 342
             IEP  +           D++  E  G     +    T  +     +  S LS       
Sbjct: 301  AIEPAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADT 360

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  TP  L   R     + P ++  Y  I +   +++W+      G   F     + DA 
Sbjct: 361  TGATPTGLAEARAAYFGKAPFDHSGYRTIRDIDTLERWIADAREAGLVGFDTQATSPDAM 420

Query: 403  HSKPIAIAISTLDQKDDTSF-KVETIFIDLSVHTS--QDSTGKNTL-----TKEILSYLK 454
             +  +  +++  D  +D S  ++   ++ L+ H S   D  G   +      +E LS LK
Sbjct: 421  RADLVGFSLAVADYANDPSGSRIRAAYVPLA-HKSGVSDLLGGGPVDSQVPVRETLSRLK 479

Query: 455  KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
            +  E+   LK+G N+KY  LV+ R+GI+MR F+D MLMSYVLD+G  +H + S+A++WL 
Sbjct: 480  ELLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFDDTMLMSYVLDAGNGAHGMDSLAERWLG 539

Query: 515  YT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +T    K++  + +SS+  D +   +   +A E++++ L+LW +L+P+L  + L  VYER
Sbjct: 540  HTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTRVYER 599

Query: 572  LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
            L++P+I V++ ME  GI +D+ +L ++S E+++   +LE+ IY L+GE F + SPKQLGD
Sbjct: 600  LERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGD 659

Query: 632  ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
            ILF K+  P G+KTKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  
Sbjct: 660  ILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGF 719

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
            ++  T+RVHT +++A+T TGRL+S +PNLQNIPI+T  G+KIR AF++ P  KL+SADYS
Sbjct: 720  VHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYS 779

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            QIELR+LAH+A I  L Q F + +DIH M A+E+FGV ++ +  ++RR AK INF IIYG
Sbjct: 780  QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYG 839

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            IS F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY +
Sbjct: 840  ISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPD 899

Query: 872  INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            I S   S+R  NERA+INAPIQGSAADI RRAM+ +  +LE  KL+ +MLLQ+HDEL+FE
Sbjct: 900  IRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFE 959

Query: 932  VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            V + EI     +I+  ME A +P +++RVPLKV+ + ++NW E +
Sbjct: 960  VEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/1003 (48%), Positives = 676/1003 (67%), Gaps = 30/1003 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
            M+  +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R  S+   
Sbjct: 1    MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60

Query: 59   -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY + TFRN +Y  YKANR   PE L+PQ  L+R AT+AF +P IE +G+EA
Sbjct: 61   PTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +AE+ G  VTI+S+DKDLMQLV+P   +YD++K+++I +  VI+KWG+PPE
Sbjct: 121  DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRE+I+  A
Sbjct: 181  KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR+LV L+ D P+ +P E   L+  +GP+LI+FLKA+EFT L  RVA   D DA 
Sbjct: 241  DLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300

Query: 298  NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKT----SQFSSLSDQTSKIN 342
             IEP  +           D++  E  G     +    T  +     +  S LS       
Sbjct: 301  AIEPAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADT 360

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  TP  L   R     + P ++  Y  I +   +++W+      G   F     + DA 
Sbjct: 361  TGATPTGLAEARAAYFGKAPFDHSGYRTIRDIDTLERWIADAREAGLVGFDTQATSPDAM 420

Query: 403  HSKPIAIAISTLDQKDDTSF-KVETIFIDLSVHTS--QDSTGKNTL-----TKEILSYLK 454
             +  +  +++  D  +D S  ++   ++ L+ H S   D  G   +      +E LS LK
Sbjct: 421  RADLVGFSLAVADYANDPSGSRIRAAYVPLA-HKSGVSDLLGGGPVDSQVPGRETLSRLK 479

Query: 455  KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
            +  E+   LK+G N+KY  LV+ R+GI+MR F+D MLMSYVLD+G  +H + S+A++WL 
Sbjct: 480  ELLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFDDTMLMSYVLDAGNGAHGMDSLAERWLG 539

Query: 515  YT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +T    K++  + +SS+  D +   +   +A E++++ L+LW +L+P+L  + L  VYER
Sbjct: 540  HTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTRVYER 599

Query: 572  LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
            L++P+I V++ ME  GI +D+ +L ++S E+++   +LE+ IY L+GE F + SPKQLGD
Sbjct: 600  LERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGD 659

Query: 632  ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
            ILF K+  P G+KTKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  
Sbjct: 660  ILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGF 719

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
            ++  T+RVHT +++A+T TGRL+S +PNLQNIPI+T  G+KIR AF++ P  KL+SADYS
Sbjct: 720  VHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYS 779

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            QIELR+LAH+A I  L Q F + +DIH M A+E+FGV ++ +  ++RR AK INF IIYG
Sbjct: 780  QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYG 839

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            IS F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY +
Sbjct: 840  ISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPD 899

Query: 872  INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            I S   S+R  NERA+INAPIQGSAADI RRAM+ +  +LE  KL+ +MLLQ+HDEL+FE
Sbjct: 900  IRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFE 959

Query: 932  VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            V + EI     +I+  ME A +P +++RVPLKV+ + ++NW E
Sbjct: 960  VEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDE 1002


>gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83]
          Length = 1004

 Score =  987 bits (2551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1005 (48%), Positives = 676/1005 (67%), Gaps = 30/1005 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
            M+  +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R  S+   
Sbjct: 1    MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60

Query: 59   -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY + TFRN +Y  YKANR   PE L+PQ  L+R AT+AF +P IE +G+EA
Sbjct: 61   PTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +AE+ G  VTI+S+DKDLMQLV+P   +YD++K+++I +  VI+KWG+PPE
Sbjct: 121  DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRE+I+  A
Sbjct: 181  KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR+LV L+ D P+ +P E   L+  +GP+LI+FLKA+EFT L  RVA   D DA 
Sbjct: 241  DLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300

Query: 298  NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKT----SQFSSLSDQTSKIN 342
             IEP  +           D++  E  G     +    T  +     +  S LS       
Sbjct: 301  AIEPAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADT 360

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  TP  L   R     + P ++     I +   +++W+      G   F     + DA 
Sbjct: 361  TGATPTGLAEARAAYFGKAPFDHSGCRTIRDIDTLERWIADAREAGLVGFDTQATSPDAM 420

Query: 403  HSKPIAIAISTLDQKDDTSF-KVETIFIDLSVHTS--QDSTGKNTL-----TKEILSYLK 454
             +  +  +++  D  +D S  ++   ++ L+ H S   D  G   +      +E LS LK
Sbjct: 421  RADLVGFSLAVADYANDPSGSRIRAAYVPLA-HKSGVSDLLGGGPVDSQVPVREALSRLK 479

Query: 455  KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
            +  E+   LK+G N+KY  LV+ R+GI+MR F+D MLMSYVLD+G  +H + S+A++WL 
Sbjct: 480  ELLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFDDTMLMSYVLDAGNGAHGMDSLAERWLG 539

Query: 515  YT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +T    K++  + +SS+  D +   +   +A E++++ L+LW +L+P+L  + L  VYER
Sbjct: 540  HTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTRVYER 599

Query: 572  LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
            L++P+I V++ ME  GI +D+ +L ++S E+++   +LE+ IY L+GE F + SPKQLGD
Sbjct: 600  LERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGD 659

Query: 632  ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
            ILF K+  P G+KTKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  
Sbjct: 660  ILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGF 719

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
            ++  T+RVHT +++A+T TGRL+S +PNLQNIPI+T  G+KIR AF++ P  KL+SADYS
Sbjct: 720  VHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYS 779

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            QIELR+LAH+A I  L Q F + +DIH M A+E+FGV ++ +  ++RR AK INF IIYG
Sbjct: 780  QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYG 839

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            IS F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY +
Sbjct: 840  ISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPD 899

Query: 872  INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            I S   S+R  NERA+INAPIQGSAADI RRAM+ +  +LE  KL+ +MLLQ+HDEL+FE
Sbjct: 900  IRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFE 959

Query: 932  VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            V + EI     +I+  ME A +P +++RVPLKV+ + ++NW E +
Sbjct: 960  VEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004


>gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1]
 gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
          Length = 978

 Score =  980 bits (2534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/991 (47%), Positives = 677/991 (68%), Gaps = 32/991 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV+A+ GFCNM+WKLL+++R  ++   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLNRKSDGLPVSAVLGFCNMVWKLLRDARDTAVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR++IYP+YKANR + PE L+PQ  L+R AT+AF +P IE++G+EA
Sbjct: 61  PTHFAVIFDYSSKTFRSKIYPEYKANRTEPPEDLIPQFGLIREATRAFDLPCIEMEGYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +  + G   TIIS+DKDLMQLV PT  +YD +K+++I +  V++KWG+PPE
Sbjct: 121 DDLIATYARLVCEAGGDTTIISSDKDLMQLVGPTVSMYDPMKDKEIRVPEVVEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQALTGD+IDN+PG+PGIG KTAA LL+EYG+L+ +L  A  IKQ+KRREN++E+A
Sbjct: 181 KMIDLQALTGDTIDNVPGVPGIGPKTAAQLLEEYGDLDTLLSRAHEIKQQKRRENLIEFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E AR+SR+LV L+ DV + +PL+ L L   +GP+LI+FLKA+EF+ L  RVA     DAA
Sbjct: 241 EKARISRELVRLKNDVTVEMPLDALALNPPDGPKLIAFLKAMEFSTLTRRVAEATGADAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS----KINSEQTPQKLFLE 353
           ++EP  +++     KG         D T+  +       +      + +  +TP+KL  +
Sbjct: 301 DVEPAYIEVQ----KGAEAHGP---DLTVPATGIGEPGAEGEVAPERDDGAETPEKLARK 353

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                S    ++  Y  I + + + QWV +    G  +    T ++D   ++   IA++T
Sbjct: 354 LADAASHEAFDHSRYVCIRDLETLNQWVAEARETGVVALDTETTSLDPMQAELCGIALAT 413

Query: 414 LDQKDDTSFKVETIFIDLS-VHTSQDSTGKNTL-----TKEILSYLKKFFENEHFLKIGH 467
              +          ++ LS  + ++D  G   +      +E L+ L+   ++   LKIG 
Sbjct: 414 APNR--------AAYLPLSHKNGAEDLLGGGMVDGQIRVEEALAVLRPLLQDPSVLKIGQ 465

Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSR 524
           N+KYD ++L+R+GI +  ++D ML+SYVL++G  +H + ++A++WL +T    KE+  S 
Sbjct: 466 NLKYDWVLLYRHGIEIAPYDDTMLISYVLEAGTQAHGMDALAERWLGHTPVSYKEVTGSG 525

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           +S +  D +   +   +A E+++V L+LW +L+P+L  + L+ VYERL++PM+ V+ +ME
Sbjct: 526 RSKVTFDMVGLERATVYASEDADVTLRLWKVLKPQLAAKGLVSVYERLERPMVSVICRME 585

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D+ +L ++S + ++   ++EE IY L+G +F + SPKQLGDILF ++  P GAK
Sbjct: 586 HRGIMVDRQILSRMSGDFAQTAAAMEEEIYRLAGGRFTIGSPKQLGDILFGRMGLPGGAK 645

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TK+GQW T+AQ LE++    + + + I++WRQ++K+KSTY D+LP +I+  T RVHT YS
Sbjct: 646 TKSGQWSTSAQVLEELAAAGHELPRKIVDWRQVTKLKSTYTDALPGYIHPETGRVHTSYS 705

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
           LAST TGRL+S EPNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I
Sbjct: 706 LASTTTGRLSSSEPNLQNIPVRTPEGRKIRTAFIAAPGYKLISADYSQIELRVLAHVADI 765

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F   +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IP
Sbjct: 766 PELKKAFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIP 825

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  YIKRYF RFPGI +Y+E+TK F R+ GYVETIFGRR HY EI S   S+R  NE
Sbjct: 826 RDEAGAYIKRYFERFPGIRDYMERTKAFCREKGYVETIFGRRAHYPEIRSSNPSVRAFNE 885

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQI 943
           RA+INAPIQGSAADI RRAM+ +  +L D  L   KMLLQ+HDELVFE PE+ I  A  +
Sbjct: 886 RASINAPIQGSAADIIRRAMMRMEAALADSGLVDVKMLLQVHDELVFEAPEDAIERAIPV 945

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   ME A  P  +L VPLKV+ + ++NW+E
Sbjct: 946 IRTVMEGAAWPARSLSVPLKVDARAADNWEE 976


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score =  979 bits (2531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1000 (48%), Positives = 674/1000 (67%), Gaps = 29/1000 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTI+S+DKDLMQLV+P   +YD++K+++I I  V++KWG+PPE
Sbjct: 121 DDIIATYARQAEAAGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQIGIPDVVEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANV 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A+LSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 241 EMAKLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTSLTRRVAEVCDCDAS 300

Query: 298 NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
            IEP V+           D++  E + +A       D + ++    S +     +    +
Sbjct: 301 VIEPAVVPIEWGAAAHGPDLDAAEPEPVAGGIP---DVSGESVPVPSRAKAKPGVEGAFS 357

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P  L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ 
Sbjct: 358 PADLAKARAEAFATLPFDHSTYETIRDLATLDRWIAAARDTGLIAFDTETTSLDAMQAEL 417

Query: 407 IAIAISTLDQ-KDDTSFKVETIFIDLS-----VHTSQDSTGKNTL-TKEILSYLKKFFEN 459
           +  A++  D   D T  K+   ++ L+              +N +  ++ L  LK   E+
Sbjct: 418 VGFAMAIADNVADPTGTKIRAAYVPLAHKDGVGDLLGGGLAENQIPMRDALPRLKALLED 477

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT--- 516
           E  LK+  N+KYD L++ RYG+  + F+D ML+SYVLD+G  +H +  +++K+L +T   
Sbjct: 478 ESVLKVAQNLKYDYLLMKRYGVETKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIP 537

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            K++  S K++I  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P+
Sbjct: 538 YKDVAGSGKANITFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPL 597

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+++ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K
Sbjct: 598 LPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGK 657

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           +    G+KTKTGQW T+A  LE +      + + I++WRQL+K+KSTY D+LP +++  T
Sbjct: 658 MGLAGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPET 717

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           +RVHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR
Sbjct: 718 RRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELR 777

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F 
Sbjct: 778 VLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFG 837

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S  
Sbjct: 838 LANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSN 897

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPE 934
            S+R  NERAAINAPIQGSAAD+ RRAMI +  +L +  LA   +MLLQ+HDEL+FEV +
Sbjct: 898 PSVRAFNERAAINAPIQGSAADVIRRAMIKMEPALAEAGLAERVRMLLQVHDELIFEVED 957

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E++  A  IIV  ME A +P + +RVPLKV+ + + NW E
Sbjct: 958 EDVEKAMPIIVSVMENATMPALEMRVPLKVDARAATNWDE 997


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1000 (48%), Positives = 674/1000 (67%), Gaps = 29/1000 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTI+S+DKDLMQLVSP   +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDIIATYARQAEASGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLDRATEIKQVKRRETILANI 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + ARLSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 241 DMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDAS 300

Query: 298 NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
            IEP ++           D++  E   +A       + + +++     +   + +    +
Sbjct: 301 AIEPAIVNVEWGKAAHGPDLDAAEPAPVAGGIP---EVSGESAPVPPRAKAKASVEGAFS 357

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P  L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ 
Sbjct: 358 PADLAKARAEAFATLPFDHTAYVTIRDLATLDRWIADARATGLVAFDTETTSLDAMQAEL 417

Query: 407 IAIAISTLDQ-KDDTSFKVETIFIDLS-----VHTSQDSTGKNTLT-KEILSYLKKFFEN 459
           +  +++  D   D T  K+   +I L+               N ++ ++ L  LK   E+
Sbjct: 418 VGFSLAIADNTADPTGTKIRAAYIPLAHKNGVGDLLGGGLADNQISMRDALPRLKSLLED 477

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT--- 516
              LK+  N+KYD L++ RYGI  R F+D ML+SYVLD+G  +H +  +++K+L +T   
Sbjct: 478 AAVLKVAQNLKYDYLLMQRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIP 537

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            K++  S K+++  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P+
Sbjct: 538 YKDVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPL 597

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+++ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K
Sbjct: 598 LPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERFNIGSPKQLGDILFGK 657

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           +    G+KTKTGQW T+AQ LE +      + + I++WRQL+K+KSTY D+LP +++  T
Sbjct: 658 MGLAGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHAET 717

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           +RVHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR
Sbjct: 718 KRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELR 777

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F 
Sbjct: 778 VLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFG 837

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S  
Sbjct: 838 LANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSN 897

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPE 934
            S+R  NERAAINAPIQGSAAD+ RRAMI +  +L +  L    +MLLQ+HDEL+FEV +
Sbjct: 898 PSVRAFNERAAINAPIQGSAADVIRRAMIRMEPALAEVGLGDRVRMLLQVHDELIFEVED 957

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E++  A  IIV  ME A +P + +RVPL+V+ + ++NW E
Sbjct: 958 EDVEKAMPIIVSVMENATMPALEMRVPLRVDARAASNWDE 997


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1001 (48%), Positives = 675/1001 (67%), Gaps = 31/1001 (3%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
            M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R   +   
Sbjct: 18   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 77

Query: 59   -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 78   PTHLAVIFDYSARTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 137

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DDIIATY   AE  G  VTI+S+DKDLMQLVSP   +YD++K+++I I  V++KWG+PPE
Sbjct: 138  DDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVVEKWGVPPE 197

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 198  KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 257

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 258  DMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEACDCDAS 317

Query: 298  NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
             IEP ++           D++  E + +A       D + ++      +   + +    +
Sbjct: 318  AIEPAIVRIEWGEKARGPDLDAAEPEPVAGGIP---DVSGESVPVPPRAKAKTAVEGAFS 374

Query: 347  PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
            P  L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ 
Sbjct: 375  PADLAKARAEAFATLPFDHSAYVTIRDLATLDRWIADARATGLVAFDTETTSLDAMQAEL 434

Query: 407  IAIAISTLDQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-------ILSYLKKFFE 458
            +  +++  D   D T  K+   ++ L VH +           E        L+ LK   E
Sbjct: 435  VGFSLAIADNTADPTGTKIRAAYVPL-VHKNGVGDLLGGGLAENQIPMGDALARLKALLE 493

Query: 459  NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-- 516
            +E  LK+  N+KYD L++ RYGI  R F+D ML+SYVLD+G  +H +  +++K+L +T  
Sbjct: 494  DESILKVAQNLKYDYLLMKRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPI 553

Query: 517  -RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
              K++  S K+++  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P
Sbjct: 554  PYKDVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERP 613

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
            ++ V+++ME  GI +D+ +L ++S E++++   LE+ IY L+GE+FN+ SPKQLGDILF 
Sbjct: 614  LLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERFNIGSPKQLGDILFG 673

Query: 636  KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
            K+    G+KTKTGQW T+AQ LE +      + + I++WRQ++K+KSTY D+LP +++  
Sbjct: 674  KMGLSGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPE 733

Query: 696  TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
            T+RVHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIEL
Sbjct: 734  TKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIEL 793

Query: 756  RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
            R+LAH+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F
Sbjct: 794  RVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF 853

Query: 816  RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
             LA QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S 
Sbjct: 854  GLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSS 913

Query: 876  KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVP 933
              S+R  NERAAINAPIQGSAAD+ RRAMI +  +L +  LA   +MLLQ+HDEL+FEV 
Sbjct: 914  NPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRMLLQVHDELIFEVE 973

Query: 934  EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +E++  A  +IV  ME A +P + +RVPL+V+ + + NW E
Sbjct: 974  DEDVEKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDE 1014


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/992 (50%), Positives = 674/992 (67%), Gaps = 44/992 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57
           M+  +HLFLVDGS +++RA+YA P L RK DGLPV A+AG+CNMLWKLL ++R  +   +
Sbjct: 1   MKATDHLFLVDGSGYVFRAYYALPPLKRKKDGLPVGAVAGYCNMLWKLLCDARNTATGIV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAV+FDY + TFR +IYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVVFDYSSDTFRKQIYPQYKANRVMPPEDLIPQFSLIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A K G   TIIS+DKDLMQLV+    LYD +K+  I I  VI+KWG+ PE
Sbjct: 121 DDLIATYAQLATKVGAKTTIISSDKDLMQLVNTHVSLYDGMKDRHIGISEVIEKWGVAPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV LQALTGD  DN+PGIPGIG K AA LL ++G+L+ +L + + +KQ KRRENI  Y+
Sbjct: 181 KMVDLQALTGDPTDNVPGIPGIGPKIAAQLLNQFGSLDLLLQHVTEVKQTKRRENIQAYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A++SR+LV L+TDVPI   L+  ILE  +GPRLI+FLKA+EF  L  RVA    CDAA
Sbjct: 241 EQAKISRELVQLKTDVPIENDLDDFILEPQDGPRLIAFLKAMEFATLTRRVAEATACDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL-Q 356
            I+  VLDI+    K     +  +RD+  K ++  SL D      SE +PQ+L  +R  Q
Sbjct: 301 VID--VLDIDVEWEK-----SGYERDSNFKRAERESLHD-----FSENSPQRLAQKRQDQ 348

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            LSQ  I  D+YT I + K +++W+ + +  G  +F   T ++D   +K +  +++   +
Sbjct: 349 ALSQ-KITRDTYTTIFDEKTLKEWLSQAQEQGFFAFDTETTSLDPIQAKLVGFSLALQPE 407

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTL-----------TKEILSYLKKFFENEHFLKI 465
           K          ++ L     +   G+N L           T++ L+ LK   E++  LKI
Sbjct: 408 K--------AAYVPL-----EHVEGENDLLKGGRIVSQIETQKALTLLKPILEDQAVLKI 454

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK 522
           G NIKYD LV+ +YGI +  F+D ML+SY L++G  +H++ +++++WL +     K++  
Sbjct: 455 GQNIKYDWLVMKQYGIVIHCFDDTMLLSYALEAGTLTHNMNALSERWLGHKPIAYKDLTH 514

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           + K      ++   Q   +A E++++ L+LW +L+P+L+ + +  +YERLD+P+I+V+++
Sbjct: 515 NGKKITSFAEVDLKQATLYAAEDADITLRLWQVLKPQLVAQGMTRIYERLDRPLIEVLAR 574

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D+ +L ++S E+++    LEE IY LSGEKFNL+SPKQLGDILF K+  P G
Sbjct: 575 MEERGILVDRQILLRLSGELAQAAFILEEEIYQLSGEKFNLASPKQLGDILFGKMGLPGG 634

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           AKTK GQW T+AQ LE++    + + + I++WRQL+K+KSTY D+LP++I  +T RVHT 
Sbjct: 635 AKTKGGQWSTSAQTLEELAAEGHILPRKIIDWRQLAKLKSTYTDALPSYILPKTGRVHTN 694

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           YSLA T TGRL+S EPNLQNIP++T  G+KIR AF++P    L+SADYSQIELRILAHIA
Sbjct: 695 YSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFVAPKRHVLLSADYSQIELRILAHIA 754

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
            IT L + F    DIH + A++IFGV IE +   +RR AK INF IIYGIS F LA QL 
Sbjct: 755 NITALKEAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINFGIIYGISAFGLANQLG 814

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R EA  YI+ YF RFPGI +YIE TK F RQNGYVETIFGRRIHY EI +    +R+ 
Sbjct: 815 LSRQEAGRYIQLYFERFPGIKDYIETTKTFARQNGYVETIFGRRIHYPEIKAASPQVRSF 874

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
           NERAAINAPIQGSAADI RRAMI +  +LE  KL+ KMLLQ+HDELVFEVPEEE      
Sbjct: 875 NERAAINAPIQGSAADIIRRAMIQMEDALEKEKLSAKMLLQVHDELVFEVPEEESKKTMA 934

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++   ME A +P ++L VPL+V + V+ NW E
Sbjct: 935 VVKKVMENATMPVLSLSVPLEVKVMVAQNWDE 966


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score =  974 bits (2519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/998 (48%), Positives = 671/998 (67%), Gaps = 25/998 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
            M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R   +   
Sbjct: 18   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 77

Query: 59   -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 78   PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 137

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DDIIATY   AE  G  VTI+S+DKDLMQLVSP   +YD++K+++I I  VI+KWG+PPE
Sbjct: 138  DDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVIEKWGVPPE 197

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 198  KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 257

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 258  DMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEACDCDAS 317

Query: 298  NIEPVVLDINTTEN-KGIAIETEIDRDTTIKTSQFSSLS-------DQTSKINSEQTPQK 349
             IEP ++ I   E  +G  ++            + S  S          S +    +P  
Sbjct: 318  AIEPAIVRIEWGETARGPDLDAAEPEPVAGGIPEVSGESVPMPPRAKAKSAVEGAFSPAD 377

Query: 350  LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
            L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ +  
Sbjct: 378  LAKARAEAFATLPFDHSAYVTIRDLVTLDRWIADARATGLVAFDTETTSLDAMQAELVGF 437

Query: 410  AISTLDQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLT-------KEILSYLKKFFENEH 461
            +++  D   D T  K+   ++ L VH +                 ++ L  LK   E+E 
Sbjct: 438  SLAIADNTADPTGTKIRAAYVPL-VHKNGVGDLLGGGLADNQIPMRDALPRLKALLEDES 496

Query: 462  FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518
             LK+  N+KYD L+L RYGI  R F+D ML+SYVLD+G  +H +  +++K+L +T    K
Sbjct: 497  VLKVAQNLKYDYLLLKRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYK 556

Query: 519  EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
            ++  S K+++  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P++ 
Sbjct: 557  DVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLP 616

Query: 579  VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
            V+++ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K+ 
Sbjct: 617  VLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERFNIGSPKQLGDILFGKMG 676

Query: 639  FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
               G+KTKTGQW T+AQ LE +      + + I++WRQ++K+KSTY D+LP +++  T+R
Sbjct: 677  LSGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKR 736

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            VHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+L
Sbjct: 737  VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 796

Query: 759  AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
            AH+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA
Sbjct: 797  AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLA 856

Query: 819  TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S
Sbjct: 857  NQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPS 916

Query: 879  IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936
            +R  NERAAINAPIQGSAAD+ RRAMI +  +L +  LA   +MLLQ+HDEL+FEV +++
Sbjct: 917  VRAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRMLLQVHDELIFEVEDQD 976

Query: 937  ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +  A  +IV  ME A +P + +RVPL+V+ + + NW E
Sbjct: 977  VEKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDE 1014


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/998 (48%), Positives = 674/998 (67%), Gaps = 25/998 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
            M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R   +   
Sbjct: 18   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 77

Query: 59   -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE QGFEA
Sbjct: 78   PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETQGFEA 137

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DDIIATY   AE  G  VTI+S+DKDLMQLVSP   +YD++K+++I I  VI+KWG+PPE
Sbjct: 138  DDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVIEKWGVPPE 197

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 198  KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 257

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR LV LR DVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   +CDA 
Sbjct: 258  DMARLSRDLVRLRIDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEACNCDAG 317

Query: 298  NIEPVVLDINTTEN-KGIAIETEIDR-------DTTIKTSQFSSLSDQTSKINSEQTPQK 349
             IEP ++ +   E  +G  ++            D + ++      +   + +    +P  
Sbjct: 318  AIEPAIVRVEWGETARGPDLDAAAPEPVAGGIPDVSGESVPVPPRAKAKTAVEGAFSPAD 377

Query: 350  LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
            L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ +  
Sbjct: 378  LAKARAEVFATLPFDHSAYVTIRDLATLDRWIADARVTGLVAFDTETTSLDAMQAELVGF 437

Query: 410  AISTLDQ-KDDTSFKVETIFIDLSVHTSQDST------GKNTL-TKEILSYLKKFFENEH 461
            +++  D   D T  K+   ++ L VH +           +N +  ++ L  LK   E+E 
Sbjct: 438  SLAIADNTADPTGTKIRAAYVPL-VHKNGVGDLLGGGLAENQIPMRDALPRLKALLEDEA 496

Query: 462  FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518
             LK+  N+KYD L+L RYGI  R F+D ML+SYVLD+G  +H +  +++K+L +T    K
Sbjct: 497  VLKVAQNLKYDYLLLKRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYK 556

Query: 519  EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
            ++  S K+++  D +   +   +A E++ V L+LWL+L+P+L    L  VYERL++P++ 
Sbjct: 557  DVAGSGKANVTFDLVDIDRATHYAAEDAEVTLRLWLVLKPRLAAAGLTSVYERLERPLLP 616

Query: 579  VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
            V+++ME  GI +D+ +L ++S E++++   LE+ IY L+GE+FN+ SPKQLGDILF K+ 
Sbjct: 617  VLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERFNIGSPKQLGDILFGKMG 676

Query: 639  FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
               G+KTKTGQW T+AQ LE +      + + I++WRQ++K+KSTY D+LP +++  T+R
Sbjct: 677  LSGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKR 736

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            VHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+L
Sbjct: 737  VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPRHKLISADYSQIELRVL 796

Query: 759  AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
            AH+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA
Sbjct: 797  AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLA 856

Query: 819  TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S
Sbjct: 857  NQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPS 916

Query: 879  IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936
            +R  NERAAINAPIQGSAAD+ RRAMI +  +L +  LA   +MLLQ+HDEL+FEV +E+
Sbjct: 917  VRAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRMLLQVHDELIFEVEDED 976

Query: 937  ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +  A  +IV  ME A +P + +RVPL+V+ + + NW E
Sbjct: 977  VEKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDE 1014


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/998 (48%), Positives = 675/998 (67%), Gaps = 27/998 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELVPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTI+S+DKDLMQLV+P   +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDIIATYARQAEAVGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQIGIPDVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E AR+SR+LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 241 EMARISRELVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQT--------SKINSEQTPQ 348
            IEP V+ I   E    A   ++D  +          +S Q+        + +    +P 
Sbjct: 301 AIEPAVVRI---EWGDAAHGPDLDAAEPAPVAGGIPEVSGQSVPVPPRAKAGVEGAFSPA 357

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
            L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ + 
Sbjct: 358 DLAKARAEAFAALPFDHSAYVTIRDLATLDRWIADARDTGLVAFDTETTSLDAMQAELVG 417

Query: 409 IAISTLDQ-KDDTSFKVETIFIDLS-----VHTSQDSTGKNTL-TKEILSYLKKFFENEH 461
            +++  D   D T  K+   ++ L+              +N +  ++ L  LK   E+E 
Sbjct: 418 FSMAIADNVADPTGTKIRAAYLPLAHKNGVGDLLGGGLAENQVPMRDALPRLKALLEDES 477

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518
            LK+  N+KYD L+L RYGI  + F+D ML+SYVLD+G  +H +  +++K+L +T    K
Sbjct: 478 VLKVAQNLKYDYLLLKRYGIETKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYK 537

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           ++  S ++++  D +   +   +A E+++V L+LWL+L+P+L+   L  VYERL++P++ 
Sbjct: 538 DVAGSGRANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLVAAGLTSVYERLERPLLP 597

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K+ 
Sbjct: 598 VLARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMG 657

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
              G+KTKTGQW T+A  LE +      + + I++WRQL+K+KSTY D+LP +++  T+R
Sbjct: 658 LAGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKR 717

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+L
Sbjct: 718 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 777

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA
Sbjct: 778 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLA 837

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S
Sbjct: 838 NQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPS 897

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936
           +R  NERAAINAPIQGSAAD+ RRAMI +  +L +  LA   +MLLQ+HDEL+FEV +E+
Sbjct: 898 VRAFNERAAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVEDED 957

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +  A  IIV  ME A +P + +RVPLKV+ + + NW E
Sbjct: 958 VDKAMPIIVSVMENATMPALEMRVPLKVDARAATNWDE 995


>gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
 gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
          Length = 997

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/990 (47%), Positives = 670/990 (67%), Gaps = 27/990 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+Q++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLMQDARNTDVGIV 76

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRN++YP+YKANR   PE L+PQ  L+R AT+AF +P IE++GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRNDLYPEYKANRSAPPEDLIPQFGLIRQATRAFNLPCIEMEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV  T  +YD +K+ +I I  VI+KWG+PPE
Sbjct: 137 DDLIATYCRLACEAGGDTTIISSDKDLMQLVGDTVAMYDPMKDRQIGIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV LQALTGDS+DN+PG+PGIG KTAA LL+++G+L+ +L  A  IKQ KRRE+I+   
Sbjct: 197 KMVDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDGLLARAGEIKQDKRRESIIANT 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+SR+LV L+ DVP+   L+  +L   +GP+LI FLK +EFT L  RVA     +A 
Sbjct: 257 DKARISRQLVTLKNDVPVAEGLDDFVLHAPDGPKLIGFLKTMEFTSLTRRVAEATSTEAG 316

Query: 298 NIEPVVLDI---NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           ++  V + +   ++     +     +      + SQ +  + QT K     TP  L   R
Sbjct: 317 DVPAVAVTVERADSAHGPDVGAGAPVMARNGAEPSQANGTT-QTPK--QGDTPSLLAALR 373

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L++ +   I+  +Y  I +   ++ WV +    G A+F +     D   ++ I +A++T 
Sbjct: 374 LERAATRKIDISAYQCIRDIATLKAWVAEAREAGIAAFDVRATAADPMQAELIGMAMATA 433

Query: 415 DQKDDTSFKVETIFIDLSVHTSQ-DSTGKNTLT-----KEILSYLKKFFENEHFLKIGHN 468
             +          +I  +  +   D  G  TL      +E L+ LK   E++  LKI  N
Sbjct: 434 PGR--------AAYIPFAHKSGNGDLLGGGTLENQIPLREALAVLKPLLEDKSVLKIAQN 485

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTR---KEILKSR 524
           +KYD +++ RYGI +  F+D ML+SYVLD+G    H + ++A KWL +T    K+++ S 
Sbjct: 486 LKYDLVIMSRYGIDVAPFDDTMLISYVLDAGTPHGHGMDALADKWLGHTPLQLKDVIGSG 545

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K+S+  D++   +   HA E+++V L+LWL+L+P+L    L+ VYERL++P++ V+++ME
Sbjct: 546 KNSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAATGLVSVYERLERPLVSVLARME 605

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D+ +L ++S E+++    LEE IY L GE+ N+ SPKQLGDILF ++  P G+K
Sbjct: 606 QRGISVDRQILSRLSGELAQGAARLEEEIYQLVGERINIGSPKQLGDILFGRMGLPGGSK 665

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  I+  T+RVHT Y+
Sbjct: 666 TKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFIHPETKRVHTSYA 725

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
           LA+T TGRL+S +PNLQNIP++T  G+KIR AFI+    +L+SADYSQIELR+LAH+A+I
Sbjct: 726 LAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEI 785

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L Q F +  DIH + A+E+F V +E +  ++RR AK INF IIYGIS F LA QL IP
Sbjct: 786 PQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIP 845

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA++YIK+YF RFPGI +YIE+TK + R++G+VETIFGRRIHY +I S   SIR  NE
Sbjct: 846 REEASNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSIRAFNE 905

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RA+INA +QG+AADI RRAM+ + ++LE  KL+ +MLLQ+HDEL+FE  + E+     I+
Sbjct: 906 RASINARLQGTAADIIRRAMVRMDEALEKAKLSARMLLQVHDELIFETVDAEVEATIPIV 965

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            H ME A +P +++ VPL V+ + +NNW E
Sbjct: 966 RHVMENAAMPAVSMSVPLHVDARAANNWDE 995


>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
 gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
          Length = 978

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/991 (47%), Positives = 661/991 (66%), Gaps = 32/991 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57
           M+K +HL+LVDGS++I+RA++A P L+RK DGLP+ A++GFCNMLWKLL  +R  +   +
Sbjct: 1   MKKGDHLYLVDGSAYIFRAYHALPPLTRKSDGLPIGAVSGFCNMLWKLLDEARDTARGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNE+YP+YKANR + PE L PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSTTFRNELYPEYKANRSEPPEDLRPQFALIRQATRAFDVPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY  +A + G   TI+S+DKDLMQL++P   +YDT+K+  +D E V  K+G+ P 
Sbjct: 121 DDIIATYAKLATEAGADTTIVSSDKDLMQLINPQVVMYDTMKDIVVDEEGVFAKFGVDPS 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GDS DNIPG+PGIG KTAA LL EYG LE +L  A  IKQ KRREN++E+A
Sbjct: 181 KMIDLQALAGDSTDNIPGVPGIGPKTAAQLLDEYGTLEELLERAGEIKQNKRRENMIEHA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+S++LV LR DVP+ + L+ L L+  NGPRLI+FLK +    L  RVA   D DAA
Sbjct: 241 DLARISKQLVTLRDDVPLDMQLDELALDTVNGPRLIAFLKGIGLNSLTRRVAVDTDTDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N+E   + +   E +G     ++D   +I         D          P KL  E   K
Sbjct: 301 NVEAEEVGVEGYEMRG----PDMDAPQSIDGDHTQPQDDNGD--GPPYRPSKLVEELTAK 354

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++   I + +Y  + + + +++W+ +   +G  +    T ++DA     + ++++T   +
Sbjct: 355 VAAEKIEHSAYETVRDAEALKRWIAEAHDLGHVAVDTETTSLDAMACDLVGVSLATGPGR 414

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL-----------TKEILSYLKKFFENEHFLKIG 466
                     +I L+ H    S+    +            KE L+ LK   E    LKI 
Sbjct: 415 --------ACYIPLA-HLKDGSSDDGDMFSEGLDPDQMDLKEALALLKPMLEAPSVLKIA 465

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
            N+KYD LVL RYGI +  F+D ML+SYVLD+GR  H + +++   L +T    KE+  S
Sbjct: 466 QNLKYDWLVLSRYGIEVGPFDDTMLLSYVLDAGRGKHGMDALSLAHLDHTPIPFKEVAGS 525

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            KS +  DK+S  +   +A E+++V L+LW LL+ +L+ EK++ VYERL++P++ V+ +M
Sbjct: 526 GKSMVTFDKVSIEKASAYAAEDADVTLRLWTLLKARLVAEKMVTVYERLERPLVPVLCRM 585

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G++ID+ +L ++S E+++    +E +I++++GE  N++SPKQLG++LF K++ P G 
Sbjct: 586 EARGVEIDRQILSRLSGELAQKAAGIEADIHEMAGEPINIASPKQLGELLFGKMELPGGK 645

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTGQW T AQ LE +    + + + I++WRQL+K+KSTY D+LP  INK T RVHT Y
Sbjct: 646 KTKTGQWATGAQALEDLAAEGHELPRRIVDWRQLTKLKSTYTDALPTFINKTTGRVHTSY 705

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           ++AST TGR +S EPNLQNIP++T+ G+KIR AFI+    KL+SADYSQIELR+LAH+A 
Sbjct: 706 AMASTTTGRFSSSEPNLQNIPVRTEAGRKIRTAFIAADGHKLVSADYSQIELRVLAHMAD 765

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
           I+ L Q F + +DIH M A+E+F V +E + P +RR AK INF IIYGIS F LA  L I
Sbjct: 766 ISQLKQAFADGIDIHAMTASEMFNVPVEGMDPSIRRQAKAINFGIIYGISAFGLANNLGI 825

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EA+DYIK YF RFPGI +Y+++TK F R++GYVETIFGRR HY EI S    +R  N
Sbjct: 826 DRGEASDYIKMYFERFPGIRDYMDETKKFAREHGYVETIFGRRAHYPEIKSSNPQMRAFN 885

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAAINAPIQGSAADI RRAM  +  +L   KL+ +MLLQ+HDEL+FEVP++E+    + 
Sbjct: 886 ERAAINAPIQGSAADIIRRAMARMEGALAAEKLSAQMLLQVHDELIFEVPDDEVDATIET 945

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +V  ME A +P ++L VPL+V+ + + NW E
Sbjct: 946 VVKVMEDAPMPALSLSVPLQVDARAAENWDE 976


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/988 (49%), Positives = 678/988 (68%), Gaps = 36/988 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M++ +HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL ++R  +I   
Sbjct: 1   MKENDHLFLVDGSGYIFRAYHALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTAIGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H A+IFDY + TFR EIYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHIAIIFDYSSNTFRKEIYPQYKANRAAPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV+    LYD++K++ I I  VI+KWG+ PE
Sbjct: 121 DDLIATYAQLATQVGAKTTIISSDKDLMQLVNKHVSLYDSMKDKHIGISEVIEKWGVMPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQALTGD  DNIPGIPGIG K AA LL ++G+L+ +L   + +KQ KRRENI  Y+
Sbjct: 181 KMIDLQALTGDPTDNIPGIPGIGPKIAAQLLDQFGSLDLLLQRVTEVKQIKRRENIQTYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A++SR+LV L+TDVP+   L+H ILE  +GPRLI+FLKA+EFT L  RVA    CDAA
Sbjct: 241 EQAKISRELVKLKTDVPVDKNLDHFILEPQDGPRLIAFLKAMEFTALTRRVAKETACDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS--EQTPQKLFLERL 355
            I+ + LDI   E             TT KT   SS  + T   +   E +PQ L  +R 
Sbjct: 301 VIDALELDIEWKE-------------TTYKTD-LSSKENNTVLFHDFFENSPQILAQKRK 346

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            +     I  D+Y  I++ + +++W+ + +  G  SF   T ++D   +K +  +++   
Sbjct: 347 DQALIQKIARDAYKTILDEEILKEWLLEAQEQGYFSFDTKTISLDPMQAKLVGFSLALQP 406

Query: 416 QKDDTSFKVETIFIDLS-VHTSQDSTGKNTL-----TKEILSYLKKFFENEHFLKIGHNI 469
            K          ++ L  V   ++  G   +     T++ L+ LK   EN+  LKIG NI
Sbjct: 407 GK--------AAYVPLEHVAEEENLLGGGRIVPQIETQKALALLKPILENQAVLKIGQNI 458

Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
           KYD LV+ +Y I M  F+D ML+SY L++G S+H +  ++++WL +   + K++  S + 
Sbjct: 459 KYDWLVMKQYNIVMCSFDDTMLLSYALEAGISTHGMDVLSKRWLGHKPISYKDLTHSGRK 518

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            +   ++   Q   +A E++++ L+LW +L+P+L+ +K+  +YERLD+P+I+++++ME  
Sbjct: 519 IVSFAQVDLKQATLYAAEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEER 578

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI +D+ +L ++S E+++  L+LEE IY L GEKFN++SPKQLGDILF K+    GAKTK
Sbjct: 579 GILVDRQILSRLSGELAQAALNLEEEIYQLVGEKFNIASPKQLGDILFGKMGLLGGAKTK 638

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +GQW T+AQ LE++    + + + I++WRQL+K+KSTY D+LP++I   T RVHT YSLA
Sbjct: 639 SGQWSTSAQTLEELAAEGHILPRKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLA 698

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           +T+TGRL+S EPNLQNIP++T  G+KIR+AF++     L+SADYSQIELRILAH+A IT 
Sbjct: 699 TTLTGRLSSSEPNLQNIPVRTAEGRKIRKAFVASKGYLLLSADYSQIELRILAHVADITA 758

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    DIH M A+++FGV +E ++ ++RR AK INF IIYGISPF LA+QL I R 
Sbjct: 759 LKEAFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPFGLASQLGISRK 818

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA+DYI+ YF RFPGI +Y+E+TK F R +GYVETIFGRRIHY EI + KS IR  NERA
Sbjct: 819 EASDYIQLYFERFPGIEDYMERTKIFARHHGYVETIFGRRIHYPEIKTAKSQIRAFNERA 878

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI RRAMI +  +LE  +L+ KMLLQ+HDEL+FEVP+ E T  + +I  
Sbjct: 879 AINAPIQGSAADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESTKTAILIKK 938

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME A +P ++L VPL+V +  + NW E
Sbjct: 939 VMENATMPALSLSVPLEVKVIAAQNWDE 966


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score =  964 bits (2492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/998 (48%), Positives = 672/998 (67%), Gaps = 27/998 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELVPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTI+S+DKDLMQLV+P   +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDIIATYARQAEAVGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQIGIPDVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E ARLSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 241 EMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQT--------SKINSEQTPQ 348
            IEP V+ I   E    A   ++D  +          +S Q+        + +    +P 
Sbjct: 301 AIEPAVVRI---EWGDAAHGPDLDAAEPAPVAGGIPEVSGQSVPVPPRAKAGVEGAFSPA 357

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
            L   R +  +    ++ +Y  I +   + +W+      G  +F   T ++DA  ++ + 
Sbjct: 358 DLAKARAEAFAALLFDHSAYVTIRDLATLDRWIADARDTGLVAFDTETTSLDAMQAELVG 417

Query: 409 IAISTLDQ-KDDTSFKVETIFIDLS-----VHTSQDSTGKNTL-TKEILSYLKKFFENEH 461
            +++  D   D +  K+   ++ L+              +N +  ++ L  LK   E+E 
Sbjct: 418 FSMAIADNVADPSGTKIRAAYVPLAHKNGVGDLLGGGLAENQVPMRDALPRLKALLEDES 477

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518
            LK+  N+KYD L+L RYGI  + F+D ML+SYVLD+G  +H +  +++K+L +T    K
Sbjct: 478 VLKVAQNLKYDYLLLKRYGIETKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYK 537

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           ++  S ++++  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P++ 
Sbjct: 538 DVAGSGRANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLP 597

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K+ 
Sbjct: 598 VLARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMG 657

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
              G+KTKTGQW T+A  LE +      + + I++WRQL+K+KSTY D+LP +++  T+R
Sbjct: 658 LAGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKR 717

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+L
Sbjct: 718 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 777

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA
Sbjct: 778 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLA 837

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S
Sbjct: 838 NQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPS 897

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936
           +R  NERAAINAPIQGSAAD+ RRAMI +  +L +  LA   +MLLQ+HDEL+FEV +E+
Sbjct: 898 VRAFNERAAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVEDED 957

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +  A  IIV  ME A +P + +RVPLKV+ + + NW E
Sbjct: 958 VDKAMPIIVSVMENATMPALEMRVPLKVDARAATNWDE 995


>gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 997

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/992 (47%), Positives = 672/992 (67%), Gaps = 29/992 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+ ++R   +   
Sbjct: 15  MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLMLDARNTDVGIV 74

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRN++YP+YKANR   PE L+PQ  L+R AT+AF +P +EI+G+EA
Sbjct: 75  PTHFAVIFDYSSKTFRNDLYPEYKANRSAPPEDLIPQFGLIRQATRAFNLPCVEIEGYEA 134

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV  T  +YD +K+ +I I  VI+KWG+PPE
Sbjct: 135 DDLIATYARLACEAGGDTTIISSDKDLMQLVGDTVAMYDPMKDRQIGIPEVIEKWGVPPE 194

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV LQALTGDS+DN+PG+PGIG KTAA LL+++G+L+ +L  A  IKQ KRRE+I+  A
Sbjct: 195 KMVDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDTLLARAGEIKQDKRRESIIANA 254

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+SR+LV L  DVP+T  LE  +L   +GP+LI FLK +EFT L  RVA     +A 
Sbjct: 255 DKARISRQLVTLMNDVPVTEGLEDFVLHAPDGPKLIGFLKTMEFTSLTRRVAEATSTEAG 314

Query: 298 NIEPVVLDINTTENK-----GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           +++ V + +   ++      G  +   + R+        +  + +TSK     TP  L  
Sbjct: 315 DVQAVAVTVERADHAHGPDVGAGLPP-VARNAPGTEPDEAGGTAETSK--QGDTPSLLAA 371

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            RL++ +   I+  +Y  I +   ++ WV +    G A+F +   + D   ++ I +AI+
Sbjct: 372 LRLERAATGKIDISAYHCIRDISTLKAWVAEAREAGIAAFDVRATSADPMQAELIGMAIA 431

Query: 413 TLDQKDDTSFKVETIFIDLS-VHTSQDSTGKNTLT-----KEILSYLKKFFENEHFLKIG 466
           T   +          +I  + +  + D  G   L      +E L+ LK   E+   LKI 
Sbjct: 432 TAPGR--------AAYIPFAHMSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVLKIA 483

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTR---KEILK 522
            N+KYD +++ RYG+ +  F+D ML+SYVLD+G    H + ++A+KWL +T    K++  
Sbjct: 484 QNLKYDLVIMSRYGVDVAPFDDTMLISYVLDAGTPHGHGMDALAEKWLGHTPLQLKDVTG 543

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           S KSS+  D++   +   HA E+++V L+LWL+L+P+L  + L+ VYERL++P++ V+++
Sbjct: 544 SGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLVSVYERLERPLVPVLAR 603

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D+ +L ++S E+++    LEE IY L GE+ N+ SPKQLGDILF ++  P G
Sbjct: 604 MEQRGISVDRQILSRLSGELAQGAARLEEEIYQLIGERINIGSPKQLGDILFGRMGLPGG 663

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KTKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  I+  T+RVHT 
Sbjct: 664 SKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFIHPDTKRVHTS 723

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y+LA+T TGRL+S +PNLQNIP++T  G+KIR AFI+  + +L+SADYSQIELR+LAH+A
Sbjct: 724 YALAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFITDKSHRLVSADYSQIELRVLAHVA 783

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +I  L Q F +  DIH + A+E+F V +E +  ++RR AK INF IIYGIS F LA QL 
Sbjct: 784 EIPQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLS 843

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR EA +YIK+YF RFPGI +YIE+TK + R++G+VETIFGRRIHY +I S   S+R  
Sbjct: 844 IPREEAGNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSLRAF 903

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
           NERA+INA +QG+AADI RRAMI + ++LE   L+ +MLLQ+HDEL+FE  E E+     
Sbjct: 904 NERASINARLQGTAADIIRRAMIRMEEALERAGLSARMLLQVHDELIFETVEAEVEATIP 963

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++ H ME A +P +++ VPL V+ + +NNW E
Sbjct: 964 VVRHVMENAAMPAVSMSVPLHVDARAANNWDE 995


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/988 (49%), Positives = 675/988 (68%), Gaps = 36/988 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M++ +HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL + R  +I   
Sbjct: 1   MKENDHLFLVDGSGYIFRAYHALPPLKRKKDGLPVGAVAGFCNMLWKLLCDVRNTAIGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H A+IFDY + TFR EIYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHIAIIFDYSSNTFRKEIYPQYKANRAAPPEELIPQFALIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV+    LYD++K++ I I  VI+KWG+ PE
Sbjct: 121 DDLIATYAQLATQVGAKTTIISSDKDLMQLVNKHVSLYDSMKDKHIGISEVIEKWGVIPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQALTGD  DNIPGIPGIG K AA LL ++G+L+ +L   S +KQ KRRENI  Y+
Sbjct: 181 KMIDLQALTGDPTDNIPGIPGIGPKIAAQLLDQFGSLDLLLQRVSEVKQIKRRENIKTYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A++SR+LV L+TDVPI   L+H ILE  +G RLI+FLKA+EFT L  R+A    CDAA
Sbjct: 241 EQAKISRELVKLKTDVPIDKDLDHFILEPQDGRRLIAFLKAMEFTALTRRIAKETSCDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN--SEQTPQKLFLERL 355
            I+ + LDI   E             TT KT   SS  + T   +  SE +PQ L  +R 
Sbjct: 301 AIDALELDIEWKE-------------TTCKTD-LSSKENNTVLFHDFSENSPQILAQKRK 346

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            K     I  D+Y  I++ + +++W+ + +  G  SF   T +++   +K +  +++   
Sbjct: 347 DKALIQKITRDTYKTILDEEILKEWLLEAQEQGYFSFDTETTSLNPMQAKLVGFSLALQP 406

Query: 416 QKDDTSFKVETIFIDLSVHTSQDST-GKNTL-----TKEILSYLKKFFENEHFLKIGHNI 469
            K          ++ L     +D+  G   +     T++ L+ LK   EN+  LKIG NI
Sbjct: 407 GK--------AAYVPLEHVAEEDNLLGGGRIVPQIETQKALALLKPILENQAVLKIGQNI 458

Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
           KYD LV+ ++ I M  F+D ML+SY L++G S+H +  ++++WL +   + K++  SR+ 
Sbjct: 459 KYDWLVMKQHNIVMCSFDDTMLLSYALEAGISTHGMDVLSERWLGHKPISYKDLTHSRRK 518

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            +   ++   Q   +A E++++ L+LW +L+P+L+ +K+  +YERLD+P+I+++++ME  
Sbjct: 519 IVSFARVDLKQATLYAAEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEER 578

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI +D+ +L ++S E+++ +L+L E IY L GEKFN++SPKQLGDILF K+  P G KTK
Sbjct: 579 GILVDRQILSRLSGELAQTVLNLGEEIYQLVGEKFNIASPKQLGDILFGKMGLPGGTKTK 638

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +GQW T+AQ LE++    + + + I++WRQL+K+KSTY D+LP++I   T RVHT YSLA
Sbjct: 639 SGQWSTSAQTLEELAAEGHILPRKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLA 698

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           +T+TGRL+S EPNLQNIP++T  G+KIR AF++     L+SADYSQIELRILAH+A IT 
Sbjct: 699 TTLTGRLSSSEPNLQNIPVRTAEGRKIRAAFVASKGHLLLSADYSQIELRILAHVADITA 758

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    DIH M A+++FGV +E ++ ++RR AK INF IIYGISPF LA+QL I R 
Sbjct: 759 LKEAFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPFGLASQLGISRK 818

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA+DYI+ YF RFPGI +Y+E+TK F R  GYVETIFGRRIHY EI + K  IR+ NERA
Sbjct: 819 EASDYIQLYFERFPGIEDYMERTKIFARHYGYVETIFGRRIHYPEIKTDKPQIRSFNERA 878

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI RRAMI +  +LE  +L+ KMLLQ+HDEL+FEVP+ E    + +I  
Sbjct: 879 AINAPIQGSAADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESKKTTILIKK 938

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME A +P ++L VPL+V +  + NW E
Sbjct: 939 VMENATMPALSLSVPLEVKVIAAQNWDE 966


>gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
 gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
          Length = 1003

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/1001 (46%), Positives = 666/1001 (66%), Gaps = 43/1001 (4%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
            M+K +HLFL+DGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+Q++R   +   
Sbjct: 17   MKKGDHLFLIDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLMQDARNTDVGIV 76

Query: 59   -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +HFAVIFDY + TFRN++YP+YKANR   PE L+PQ  L+R AT+AF +P IE++GFEA
Sbjct: 77   PTHFAVIFDYSSKTFRNDLYPEYKANRSAPPEDLIPQFGLIRQATKAFNLPCIEMEGFEA 136

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +A + G   TIIS+DKDLMQLV  T  +YD +K+ +I I  VI+KWG+PPE
Sbjct: 137  DDLIATYCRLAREAGGDTTIISSDKDLMQLVGDTVGMYDPMKDRQIGIPEVIEKWGVPPE 196

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KMV LQALTGDS+DN+PG+PGIG KTAA LL+++G+L+ +L  A  IKQ KRRE+I+   
Sbjct: 197  KMVDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDGLLARAGEIKQDKRRESIIANT 256

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + A +SR+LV L+ DVP+   L+  +L   +GP+LI FLK +EFT L  RVA     +A 
Sbjct: 257  DKALISRQLVTLKNDVPVAEGLDDFVLHAPDGPKLIGFLKTMEFTSLTRRVAEATSTEAG 316

Query: 298  NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE------------- 344
            +++ V + +   ++           D        +    +T + N E             
Sbjct: 317  DVQAVAVIVERADHAH-------GPDVGAGAPVVARSGAETGQANGEATATPTADTAKQG 369

Query: 345  QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
             TP  L   RL++ +   I+  +Y  I +   ++ WV +    G  +F +   + D   +
Sbjct: 370  DTPSLLSALRLERAATGKIDTAAYPCIRDIATLKAWVAEAREAGVTAFDVRATSADPMQA 429

Query: 405  KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ--DSTGKNTLT-----KEILSYLKKFF 457
            + I +AI+T   +          +I  + H S   D  G   L      +E L+ LK   
Sbjct: 430  ELIGMAIATAPGR--------AGYIPFA-HKSGNGDLLGGGALENQIPLREALAVLKPLL 480

Query: 458  ENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYT 516
            E+   LKI  N+KYD +++ RYGI +  F+D ML+SYVLD+G    H +  +A+KWL +T
Sbjct: 481  EDRSVLKIAQNLKYDLVIMSRYGIDVAPFDDTMLISYVLDAGTPHGHGMDQLAEKWLGHT 540

Query: 517  R---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
                K++  S KSS+  D++   +   HA E+++V L+LWL+L+P+L  + L+ VYERL+
Sbjct: 541  PLQLKDVTGSGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLVSVYERLE 600

Query: 574  KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            +P++ V+++ME  GI +D+ +L ++S E+++    LEE IY L GE+ N+ SPKQLGDIL
Sbjct: 601  RPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLIGERINIGSPKQLGDIL 660

Query: 634  FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            F ++  P G+KTKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  I+
Sbjct: 661  FGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFIH 720

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
              T+RVHT Y+LA+T TGRL+S +PNLQNIP++T  G+KIR AFI+    +L+SADYSQI
Sbjct: 721  PDTRRVHTSYALAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFIADKGNRLVSADYSQI 780

Query: 754  ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
            ELR+LAH+A+I  L Q F +  DIH + A+E+F V +E +  ++RR AK INF IIYGIS
Sbjct: 781  ELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGIS 840

Query: 814  PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             F LA QL IPR EA++YIK+YF RFPGI +YIE+TK + R++G+VETIFGRRIHY +I 
Sbjct: 841  AFGLANQLSIPREEASNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIR 900

Query: 874  SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
            S   SIR  NERA+INA +QG+AADI RRAM+ + ++L+  KL+ +MLLQ+HDEL+FE  
Sbjct: 901  SSNPSIRAFNERASINARLQGTAADIIRRAMVRMEEALDRAKLSARMLLQVHDELIFETV 960

Query: 934  EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E E+     ++ H ME A +P +++ VPL V+ + +NNW E
Sbjct: 961  EAEVEATIPVVRHVMENAAMPAVSMSVPLHVDARAANNWDE 1001


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/981 (48%), Positives = 662/981 (67%), Gaps = 22/981 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+  +HLFLVDGSS+++RA+YA PLL RK DGLPV A+AGFCNMLWKLL ++R  +I   
Sbjct: 1   MKATDHLFLVDGSSYVFRAYYALPLLKRKKDGLPVGAVAGFCNMLWKLLCDARNTAIGIV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAV+FDY + TFR +IYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVVFDYSSDTFRKQIYPQYKANRVAPPEDLIPQFSLIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A K G   TIIS+DKD MQLV+    LYD +K++ I I  V++KW + PE
Sbjct: 121 DDLIATYAQLATKVGAKTTIISSDKDFMQLVNTHVSLYDGMKDKHIGISEVLEKWDVAPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV LQALTGD  DN+PGIPGIG K AA LL ++G+L+ +L   + +KQ KRRENI  Y+
Sbjct: 181 KMVDLQALTGDPTDNVPGIPGIGPKIAAQLLNQFGSLDLLLQRVAEVKQTKRRENIQAYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A++SRKLV L+TDVPI   L+ LILE  +GPRLI+FLK +EF  L  RVA    CDAA
Sbjct: 241 EQAKISRKLVQLKTDVPIENDLDDLILESQDGPRLIAFLKTMEFATLTRRVAEATACDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER-LQ 356
            I+ + LD+   E      ++E+ R     +  FS           + TPQ L  +R  Q
Sbjct: 301 VIDALDLDVEWVEPV-YGCDSEVKRAERALSHDFS-----------KNTPQVLAQKRKCQ 348

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            LSQ  I  D+Y  I + + +++W+ + +  G  +F   T ++D   +K +  +++   Q
Sbjct: 349 ALSQ-TIKRDAYLSIFDEEILKKWLSEAKEQGFFAFDTETTSLDPLQAKLVGFSLAL--Q 405

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               ++     F                 T++ L+ LK   E++  LKIG NIKYD LV+
Sbjct: 406 PGKAAYVPLEHFEGGGDLLGGGRIVGQIETRKALTLLKPILEDQAVLKIGQNIKYDWLVM 465

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            +YGI +R F+D ML+SY LD+G  +H++ +++++WL +     K++  + K      ++
Sbjct: 466 KQYGIVIRCFDDTMLLSYALDAGALTHNMDALSERWLGHKPIAYKDLTHNGKKITSFAQV 525

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              Q   +A E++++ L+LW +L+P+L+   +  VYERLD+P+++V+++ME  GI +D+ 
Sbjct: 526 DLKQATLYAAEDADITLRLWQVLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQ 585

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L ++S E+++    LEE IY L+GEKFNL+SPKQLG ILF K+  P G +TK+GQW T+
Sbjct: 586 ILLRLSGELAQAAFILEEEIYQLAGEKFNLASPKQLGGILFGKMSLPGGTRTKSGQWSTS 645

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           AQ LE++    + + + I++WRQL+K+KSTYAD+LP++I  +T R+HT YSLA T TGRL
Sbjct: 646 AQTLEELAAEGHILPRKIIDWRQLAKLKSTYADALPSYILSKTGRIHTNYSLAITSTGRL 705

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP++T  G+KIR AFI+P    L+SADYSQIELRILAHIA I  L + F  
Sbjct: 706 SSSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSADYSQIELRILAHIADIIALKEAFAQ 765

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH + A+++FGV IE ++  +RR AK INF IIYGIS F LA QL + R EA+ YI+
Sbjct: 766 GQDIHAITASQMFGVAIEGMNSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEASHYIQ 825

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RFPGI +Y+E TKNF  +NGYVETIFGRRIHY EI +    +R+ NERAAINAPIQ
Sbjct: 826 LYFERFPGIKDYMEMTKNFACRNGYVETIFGRRIHYPEIKAANLQVRSFNERAAINAPIQ 885

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI RRAMI +  +LE  KL+ KMLLQ+HDEL+FEVPE+E      ++   ME A +
Sbjct: 886 GSAADIIRRAMIQMENALEKEKLSAKMLLQVHDELIFEVPEDESERTMALVKKVMENATM 945

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
           P ++L VPL+V +  + NW+E
Sbjct: 946 PVLSLSVPLEVKVMAAQNWEE 966


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
          Length = 968

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/986 (48%), Positives = 667/986 (67%), Gaps = 32/986 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+  +HLFLVDGSS+I+RA++A P L RK DGLPV A++GFCNMLW+LL ++R  ++   
Sbjct: 1   MKINDHLFLVDGSSYIFRAYHALPPLKRKKDGLPVGAVSGFCNMLWRLLCDARNTAVGLT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ + TFR +IYP+YKANR   P+ L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDHSSHTFRKQIYPEYKANRATPPDDLIPQFSLIRQATKAFNVPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY ++A + G   TIIS+DKDLMQLV+    LYD +K++ I +  V++KWG+ P+
Sbjct: 121 DDLIATYAHLATQVGAKTTIISSDKDLMQLVNAHVSLYDGMKDKHIGVAEVVEKWGVTPD 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV LQALTGD +DNIPGIPGIG KTAA LL ++G+L+ +L + S IKQ KRRENI  Y 
Sbjct: 181 KMVDLQALTGDPVDNIPGIPGIGPKTAAQLLNQFGSLDLLLQHVSEIKQTKRRENIQTYG 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +   +SR LV L+TDVPI   L+  ILE  +GPRLI+FLKA+EFT L  RVA   +CDA 
Sbjct: 241 KQTEISRVLVKLKTDVPIDNDLDSFILEPQDGPRLIAFLKAMEFTTLTRRVAEATECDAT 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            IE   ++   TE       T    D  ++ +  +      S  +SE  PQ L  +R ++
Sbjct: 301 IIEACDVETEWTE-------TVHGPDLDVQKADAA-----LSHTSSENCPQFLAQKRKEQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+Y  +++   +++W+ + E  G  SF   T ++D   +K +  +++    K
Sbjct: 349 AFTQVITRDAYETLLDEDILKKWLLEAEEQGYFSFDTETTSLDPMQAKLVGFSLALQPNK 408

Query: 418 DDTSFKVETIFIDLS-VHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
                     +I L  +    D  G   +  +I     L+ LK   EN+  LKIG N+KY
Sbjct: 409 --------AAYIPLEHIEGGNDLFGGERIVGQIETQRALALLKPILENQAVLKIGQNMKY 460

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ +Y I++R F+D ML+SYVLD+G S+H +  ++++WL +T    K +    K  +
Sbjct: 461 DWLVMRQYDITIRSFDDTMLLSYVLDAGISTHGMDVLSERWLGHTPIAYKNLTCDGKKIV 520

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              ++   Q   +A E++++ L+LW +L+P+L+ + +  +YERLD+P+I+V+++ME  GI
Sbjct: 521 SFAQVDLKQATLYAAEDADITLRLWQVLKPQLVAQGMTKIYERLDRPLIEVLARMEERGI 580

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L  +S E+++  LSLEE IY L+GE+FN++SPKQLGDILF+K+  P GAKTK G
Sbjct: 581 LVDRQILSCLSGELAQAALSLEEEIYQLAGEQFNIASPKQLGDILFSKIGLPGGAKTKGG 640

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE++    + + + I++WRQ++K+KSTY D+LP++I+ +T RVHT YSLA+T
Sbjct: 641 QWSTSAQILEELAAEGHMLPRKIVDWRQIAKLKSTYTDALPSYISPKTGRVHTNYSLATT 700

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIPI+T  G+KIR AFI+     L+SADYSQIELR+LAHIA IT L 
Sbjct: 701 STGRLSSSEPNLQNIPIRTIEGRKIRTAFIASEGCLLLSADYSQIELRLLAHIADITALK 760

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH M A+++FGV IE++S  +RR AK INF IIYGIS F LA QL I R EA
Sbjct: 761 EAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINFGIIYGISAFGLANQLGISREEA 820

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           + YI+ YF RFPGI  Y+E TK F RQ+GYVETIFGRRIHY EI +    +R  NERAAI
Sbjct: 821 SHYIRVYFERFPGIQSYMEATKIFARQHGYVETIFGRRIHYPEIKARDRQVRAFNERAAI 880

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI RRAMI +  +LE   L+ KMLLQ+HDEL+FE+P+ E      I+   M
Sbjct: 881 NAPIQGSAADIIRRAMIQMEGALEKEGLSAKMLLQVHDELIFEIPKAESEKTKAIVKKVM 940

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V + V+ NW E
Sbjct: 941 ENATMPALSLSVPLEVKVMVAQNWDE 966


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/986 (49%), Positives = 660/986 (66%), Gaps = 32/986 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+  +HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL ++R  +I   
Sbjct: 1   MKANDHLFLVDGSGYIFRAYHALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTAIGIV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H A+IFDY + TFR +IYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHVAIIFDYSSNTFRKQIYPQYKANRTAPPEDLVPQFALIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV+    LYD +K++ I I  V++KWG+ PE
Sbjct: 121 DDLIATYAQLATQVGAKTTIISSDKDLMQLVNTHVSLYDGMKDKHIGISEVMEKWGVMPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV  QALTGD  DNIPG+PGIG K AA LL ++G+LE +L   + IKQ KRRENI  Y+
Sbjct: 181 KMVDFQALTGDPTDNIPGVPGIGPKIAAQLLDQFGSLELLLQRVTEIKQIKRRENIQAYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A++SR+LV L+ DVPI   L+H ILE  +GPRLI+FLKA+EFT L  RVA    CDAA
Sbjct: 241 EQAKISRELVKLKKDVPIDKSLDHFILEPQDGPRLIAFLKAMEFTALTRRVAKETSCDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+ + +DI   E       T  + D  +K        D      SE +PQ L  +R  +
Sbjct: 301 VIDALDIDIEWEE-------TTCEADLNVKEDNKVLFHD-----FSENSPQILAQKRKDQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+Y  I++ + +++W+ + E  G  +F   T ++D   +K +  +++    K
Sbjct: 349 TLTQKIARDAYKTILDEEILKEWLLEAEKQGYFAFDTETTSLDPMQAKLVGFSLALQPGK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDS--TGKNTL----TKEILSYLKKFFENEHFLKIGHNIKY 471
                     +I L     +D    G   +    T++ L+ LK   EN+  LKIG NIKY
Sbjct: 409 --------AAYIPLEHTAGEDGLLAGGRIVPQIETQKALALLKPILENQAILKIGQNIKY 460

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           D LV+ +Y I MR F+D ML+SY L++G S+H I  ++++WL +   T K++  + K  +
Sbjct: 461 DWLVMKQYDIVMRSFDDTMLLSYALEAGISTHGIDVLSERWLGHKPITYKDLTYNGKKIV 520

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              +I   Q   +A E++++ L+LW +L+P+L+ +++  +YERLD+P+I+++++ME  GI
Sbjct: 521 SFAQIDLKQATLYAAEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGI 580

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S E+++  L+LEE IY L GE+FN++SPKQLGDILF K+  P GAKTK G
Sbjct: 581 LVDRQILSRLSGELAQAALNLEEEIYQLVGERFNIASPKQLGDILFGKMGLPGGAKTKNG 640

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE++    + + + I++WRQL+K+KSTY D+LP++I  +T RVHT YSLA+T
Sbjct: 641 QWSTSAQTLEELATEGHILPRKIVDWRQLAKLKSTYTDALPSYILTKTGRVHTNYSLATT 700

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIP +T  G+KIR AFI+     L+SADYSQIELRILAH A I  L 
Sbjct: 701 STGRLSSSEPNLQNIPARTAEGRKIRAAFIASEGHILLSADYSQIELRILAHFADIGALK 760

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH M A+++FGV +E +   +R+ AK INF IIYGIS F LA QL I R EA
Sbjct: 761 EAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINFGIIYGISSFGLANQLGISRKEA 820

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +YI+ YF RFPGI +Y+EKTK F R +GYVETIFGRRIHY EI +    IR  NERAAI
Sbjct: 821 GNYIRLYFERFPGIEDYMEKTKMFARHHGYVETIFGRRIHYPEIKTANPQIRAFNERAAI 880

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI RRAMI V  +LE  KL+ KMLLQ+HDEL+FEV + E T  + +I   M
Sbjct: 881 NAPIQGSAADIIRRAMIQVENALEKEKLSAKMLLQVHDELIFEVSKSESTKTAILIKKVM 940

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V +  + NW E
Sbjct: 941 ENATMPALSLSVPLEVKVIAAQNWNE 966


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/990 (46%), Positives = 662/990 (66%), Gaps = 28/990 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+  +R  S+   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLVSEARDTSVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ + TFRNE+YP+YKANR   PE L+PQ  ++R AT+AF +P IE++GFEA
Sbjct: 61  PTHFAVIFDHSSKTFRNELYPEYKANRSAPPEDLVPQFAVIREATRAFDLPCIEMEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G  VT+IS+DKDLMQLV P   +YD++K+ +I +  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAREAGADVTVISSDKDLMQLVGPQVSMYDSMKDRQIGVPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQALTGDS+DN+PGIPGIG KTAA L++++G+L+ +L  A  IKQ KRRENI+E+A
Sbjct: 181 KMIDLQALTGDSVDNVPGIPGIGPKTAAQLIEQFGDLDTLLERAGEIKQNKRRENIVEFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+SR+LV LR DV ++  L  L+L   NGP+L++FLK +EFT L  RVA   D DA+
Sbjct: 241 DKARISRELVRLRDDVEVSEKLGELVLNPLNGPKLVAFLKGMEFTSLTRRVADATDTDAS 300

Query: 298 NIEPVVLDINTT-ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            ++   + ++   E +G  ++     +  +           T+   ++ TPQ L   R  
Sbjct: 301 AVDAADVAVDAAAEMRGPDLDPGDAANAAV-----------TATGQNDDTPQGLAKRRAA 349

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +     I+  +Y  + + + ++ W       G  +F   T ++DA  ++ +  +++  + 
Sbjct: 350 EAGSAKIDTTAYETLSDIEQLKAWCAMARETGVVAFDTETTSLDAMQAELVGFSLAVPEA 409

Query: 417 KDDTS-FKVETIFIDLSVHTSQDSTGKNTL--------TKEILSYLKKFFENEHFLKIGH 467
             DT   KV   +  L+ H++                  +  L  LK   E    LKIG 
Sbjct: 410 APDTGELKVRACYAPLA-HSNGVGDLLGGGGLQPGQMPVRAALDELKALLEEPAVLKIGQ 468

Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
           N+KYD LV+ ++ I ++ F+D ML+SYVLD+G+  H + +++++WL +     K++  S 
Sbjct: 469 NLKYDMLVMAQHNIEIKSFDDTMLLSYVLDAGQGGHGMDALSERWLGHKTIGYKDVTGSG 528

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           KS+IP  +++  +   +A E++ V L+LW  L+ +L+ E +  VYERL++P+  V+ +ME
Sbjct: 529 KSAIPFAQVAIDKATAYAAEDAEVTLRLWHALKVRLVSEGMTSVYERLERPLAPVLMRME 588

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI++D+ +L ++S E+++   +LE  I +L+GE FN+ SPKQLG+ILF K+  P G+K
Sbjct: 589 QRGIRVDRQILSRLSGELAQGAAALEAEIQELAGENFNVGSPKQLGEILFDKMSLPGGSK 648

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  IN  T+RVHT ++
Sbjct: 649 TKTGQWSTSAQALEDLAAAGHELPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSFA 708

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
           +A+T TGRL+S +PN+QNIP++T  G+KIR AF++ P   LISADYSQIELR+LAH+A I
Sbjct: 709 MAATTTGRLSSSDPNIQNIPVRTAEGRKIRTAFVAEPGNVLISADYSQIELRVLAHVANI 768

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L Q F + +DIH M A+E+FGV IE +  ++RR AK INF IIYGIS F LA QL I 
Sbjct: 769 PQLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIE 828

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           RSEA DYI++YF RFPGI +Y++ TK   ++NGYV TIFGRR HY EI S    +R  NE
Sbjct: 829 RSEAGDYIRKYFERFPGIKDYMDATKAEAKENGYVTTIFGRRAHYPEIRSSNPQVRAFNE 888

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAAINAPIQGSAADI RRAM+ +  +LE   +  +MLLQ+HDEL+FE  E +      +I
Sbjct: 889 RAAINAPIQGSAADIIRRAMVRMEPALEAAGMQARMLLQVHDELIFETAEADADKIIPVI 948

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           V  ME A +P I++ VPL+V+ + + NW +
Sbjct: 949 VEVMENAAMPAIDMAVPLQVDARAAKNWDQ 978


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/989 (49%), Positives = 669/989 (67%), Gaps = 38/989 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+ ++HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL ++R  ++   
Sbjct: 1   METKDHLFLVDGSGYIFRAYHALPPLKRKRDGLPVGAVAGFCNMLWKLLCDARNTAVGIV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR +IYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSDTFRKKIYPQYKANRAAPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV+    LYD +K++ I +  VI+KWG+ PE
Sbjct: 121 DDLIATYAQLATQAGAKTTIISSDKDLMQLVNTRVSLYDGMKDKHIGVSEVIEKWGVAPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GD+ DNIPG+PGIG K AA LL ++G L+ +L +A  IKQ KRRENI  Y 
Sbjct: 181 KMIDLQALVGDTTDNIPGVPGIGPKIAAQLLNQFGTLDLLLQHAEEIKQVKRRENIQAYK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++SR+LV L+TDVPI   L++ ILE  +GPRLI+FLKA+EFT L  RVA    CDA 
Sbjct: 241 EQTKISRELVKLKTDVPIDNNLDNFILEPQDGPRLIAFLKAMEFTTLTRRVAEATACDAE 300

Query: 298 NIEPVVLDINTTENKGI-AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL- 355
            I+   LDI+T   + I   + + ++  ++ T  F            + +PQ L  +R  
Sbjct: 301 VID--ALDIDTEWTQTIHGPDLDSEKVGSLLTHDFC-----------KDSPQTLAQKRKD 347

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q L Q  I  DSY  I++ K +++W+ + +  G  +F I T +++   +K I  +++   
Sbjct: 348 QALVQKNIG-DSYETILDEKILREWLLEAQEQGYFAFNIETTSLNPIQAKIIGFSLALQP 406

Query: 416 QKDDTSFKVETIFIDLSVHTSQ--DSTGKNTL-----TKEILSYLKKFFENEHFLKIGHN 468
           +K          +I L  HT +  D  G   +     T+++L+ LK   E++  LKIG+N
Sbjct: 407 EK--------AAYIPLE-HTEEGCDLLGGGCVVTQIETQKVLALLKPILEDQAVLKIGYN 457

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRK 525
           +KY+ L++ +Y I  + F+DIML+SY LD+G S+H+   ++++WL +     K++  + K
Sbjct: 458 MKYNWLIMKQYAIVTQPFDDIMLISYALDAGTSTHNRDILSERWLKHKPIAYKDLTHNGK 517

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
                 ++   Q   +A E +++ L+LW +L+P+L+ + +  +YERLD+P+I+V+++ME 
Sbjct: 518 KITSFAQVDLKQATFYAAEGADITLRLWQVLKPQLVAQGVTKIYERLDRPLIEVLAKMEE 577

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI +D+ +L ++S E+++  LSLEE IY L GE+FN++SPKQL DILF K+  P G KT
Sbjct: 578 RGILVDRQILSRLSCELAQAALSLEEEIYQLVGERFNIASPKQLSDILFGKMGLPGGVKT 637

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           K GQW T+AQ LE++    + + + I++WRQL+K+KSTY D+LP +I   T RVHT YSL
Sbjct: 638 KNGQWSTSAQILEELAAEGHTLPRKIVDWRQLTKLKSTYTDALPYYILPETGRVHTNYSL 697

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A+T TGRL+S EPNLQNIPI+T  G+KIR AFI+P    L+SADYSQIELRILAHIA IT
Sbjct: 698 ATTSTGRLSSSEPNLQNIPIRTPEGRKIRTAFIAPKGCVLLSADYSQIELRILAHIANIT 757

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F    DIH + A++IFGV +E +   +RR AK INF IIYGIS F LA QL I R
Sbjct: 758 ALKEAFAQDQDIHAITASQIFGVAVEGMPSDIRRRAKAINFGIIYGISAFGLANQLSISR 817

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +EA+ YI  YF RFPGI +Y+E TK+F RQ+GYVETIFGRRIHY EI +  S IR  NER
Sbjct: 818 NEASRYIDIYFERFPGIKDYMETTKSFARQHGYVETIFGRRIHYPEIKATNSQIRTFNER 877

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAPIQGSAADI RRAMI +  +L+  KL+ KMLLQ+HDEL+FEVPE E      ++ 
Sbjct: 878 AAINAPIQGSAADIIRRAMIQMEGALKKEKLSAKMLLQVHDELIFEVPETESEKTKVLVT 937

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME A +P ++L VPLKV +  + NW E
Sbjct: 938 KVMENAAMPALSLSVPLKVKVAAAQNWNE 966


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/986 (49%), Positives = 663/986 (67%), Gaps = 32/986 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57
           M+  +HL LVDGS +++RA+YA P L RK DGLPV A+AGFCNMLWKLL ++R  +   +
Sbjct: 1   MKATDHLLLVDGSGYVFRAYYALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTATGIV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR +IYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSDTFRKQIYPQYKANRVDPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A K G   TIIS+DKDLMQLV+    LYD +K++ I I  VI+KWG+ PE
Sbjct: 121 DDLIATYAQLATKVGAKTTIISSDKDLMQLVNKHVSLYDGMKDKHIGISEVIEKWGVTPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GDS DN+PGIPGIG KTAA LL ++G+L+ +L   + IKQ KRRENI  Y+
Sbjct: 181 KMIDLQALIGDSTDNVPGIPGIGPKTAAQLLNQFGSLDLLLQRVTEIKQTKRRENIQAYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++SR+LV L+TDVPI   L+  ILE  +GPRLI+FLKA+EF+ L  RVA    CDAA
Sbjct: 241 EQVKISRELVRLKTDVPIDSDLDDFILEPQDGPRLIAFLKAMEFSTLTRRVAEETTCDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+   LD++    K          DT IK  + +SL +      SE +PQ    +R  +
Sbjct: 301 VID--ALDVDVEWEK-----LSHGHDTDIKNIEKTSLHN-----FSENSPQVFAQKRKDQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+YT I++ + +++W+ + +  G  +F   T ++D   +K +  +++    K
Sbjct: 349 ALTQKITRDTYTTILDEEILKEWLSQAQEQGFFAFDTETTSLDPMQAKLVGFSLALQPGK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL------TKEILSYLKKFFENEHFLKIGHNIKY 471
                     +I L     ++   K         T++ L+ LK   E+   LKIG NIKY
Sbjct: 409 --------AAYIPLEHFEGKEDLLKGGRIASQIETRKALALLKPLLEDSAVLKIGQNIKY 460

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           D LV+ +Y I +R F+D ML+SY LD+G  +H++  ++++WL +     K++  + K   
Sbjct: 461 DWLVVKQYDIVIRSFDDTMLLSYALDAGALTHNMDDLSERWLEHKPIAYKDLTHNGKKIT 520

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              ++   Q   +A E++++ L+LW +L+P+L+   +  +YERLD+P+++V+++ME  GI
Sbjct: 521 SFAQVDLKQATLYAAEDADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERGI 580

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S E+++  L LEE IY  + EKFNL+SPKQLGDILF K+  P GAKTK G
Sbjct: 581 LVDRQILLRLSGELAQAALILEEEIYKQADEKFNLASPKQLGDILFDKMGLPGGAKTKGG 640

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE+++   + + + I+EWRQL+K+KSTYAD+LP++I  +T RVHT YSLA T
Sbjct: 641 QWSTSAQTLEELSAEGHTLPRKIIEWRQLAKLKSTYADALPSYILPKTGRVHTNYSLAIT 700

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIP++T  G+KIR AFI+P    L+SADYSQIELRILAHIA I  L 
Sbjct: 701 STGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKALK 760

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH + A+++FGV IE +   +RR AK INF IIYGIS F LA QL I R EA
Sbjct: 761 EAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAFGLANQLGISRQEA 820

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+EKTK+F R+NGYVETIFGRRIHY EI +    IR++NERAAI
Sbjct: 821 GRYIQLYFERFPGIKDYMEKTKSFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAI 880

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI RRAMI +  +L++  L+ KMLLQ+HDEL+FEVPEEE      ++   M
Sbjct: 881 NAPIQGSAADIIRRAMIQMEDALKEENLSAKMLLQVHDELIFEVPEEESKKTMAVVKDVM 940

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +P ++L VPL+V +  + NW E
Sbjct: 941 ENATMPVLSLSVPLEVKVMTAQNWDE 966


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/987 (48%), Positives = 659/987 (66%), Gaps = 33/987 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57
           M+  +HLFLVDGS +++RA+YA P L RK DGLPV A+AGFCNMLWKLL ++R  +   +
Sbjct: 1   MKATDHLFLVDGSGYVFRAYYALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTATGIV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR +IYP+YKANR + PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSDTFRKQIYPEYKANRAEPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A K G   TIIS+DKDLMQLV+    LYD +K++ I I  V++KWG+ PE
Sbjct: 121 DDLIATYAKLATKVGAKTTIISSDKDLMQLVNTHVSLYDGMKDKHIGISEVVEKWGVAPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GDS DN+PGIPGIG KTAA LL ++ +L+ +L N + IKQ KRRENI  Y 
Sbjct: 181 KMIDLQALIGDSTDNVPGIPGIGPKTAAQLLDQFDSLDLLLQNVTEIKQTKRRENIQAYR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++SR+LV L+TDVPI   L+  ILE  +GPRLI+FLKA+EF+ L  RVA    CDA 
Sbjct: 241 EQVKISRELVRLKTDVPIDNDLDDFILEPQDGPRLIAFLKAMEFSTLTRRVAEATTCDAT 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+   LDI+    K          D+ IK ++ +SL +      SE +PQ    +R  +
Sbjct: 301 VID--ALDIDVEWEK-----LSHGHDSDIKNTERASLHN-----FSENSPQVFAQKRKDQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+YT I++ + ++ W+ + +  G  +F   T ++D   +K +  +++   +K
Sbjct: 349 ALTQKITRDAYTTILDEEILKDWLSQAQEQGFFAFNTETTSLDPMQAKLVGFSLALQPEK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDS-------TGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                     +I L      +              T++ L+ LK   E+   LKIG NIK
Sbjct: 409 --------AAYIPLEHFDEGEEDLLRGGHIASQIETRKALALLKPILEDSSVLKIGQNIK 460

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
           YD LV+ +Y I +  F+D ML+SY  D+G  +H++  ++++WL +   + K++  + K  
Sbjct: 461 YDWLVMKQYDIIISSFDDTMLLSYAFDAGILTHNMDDLSERWLKHKPISYKDLTHNGKKI 520

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
               ++   Q   +A E +++ L+LW +L+P+L+   +  +YERLD+P+++V+++ME  G
Sbjct: 521 TSFAQVDLKQATLYAAERADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERG 580

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I ID+ +L ++S E+++  L LEE IY  + EKFNL+SPKQLGDILF K+    GAKTK 
Sbjct: 581 ILIDRQILLRLSGELAQAALILEEEIYKQADEKFNLASPKQLGDILFGKMGLSGGAKTKG 640

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQW T+AQ LE++    + + + I+EWRQL+K+KSTY D+LP++I  +T RVHT YSLA 
Sbjct: 641 GQWSTSAQTLEELAAEGHVLPRKIIEWRQLAKLKSTYTDALPSYIFSKTGRVHTNYSLAI 700

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S EPNLQNIP++T  G+KIR AFI+P    L+SADYSQIELRILAHIA I  L
Sbjct: 701 TSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKAL 760

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F    DIH + A+++FGV IE +   +RR AK INF IIYGIS F LA QL I R E
Sbjct: 761 KEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAFGLANQLGISRQE 820

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI+ YF RFPGI +Y+EKTK F R+NGYVETIFGRRIHY EI +    IR++NERAA
Sbjct: 821 AGRYIQLYFERFPGIKDYMEKTKIFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAA 880

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI RRAMI +  +L++ KL+ KMLLQ+HDEL+FEVPEEE      ++ + 
Sbjct: 881 INAPIQGSAADIIRRAMIQMENALKEEKLSAKMLLQVHDELIFEVPEEESKKTMAVVKNV 940

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A +P ++L VPL+V +  + NW E
Sbjct: 941 MENATMPILSLSVPLEVKVMTAQNWDE 967


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/990 (46%), Positives = 649/990 (65%), Gaps = 28/990 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNS---RKESI 57
           +  ++HL LVDGS+FI+RA++A P L+RK DGLPV A++GFCNMLWKLLQ      +   
Sbjct: 22  LTADDHLILVDGSTFIFRAYHALPPLTRKPDGLPVGAVSGFCNMLWKLLQEGLTPEEGDE 81

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ A TFR+EIYP+YKA RP  PE L+PQ  L+R AT+AF    IE +GFEA
Sbjct: 82  PTHFAVIFDHSAQTFRSEIYPEYKAQRPPPPEDLVPQFGLIREATRAFSTHCIEQEGFEA 141

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   A ++G  VTI+S DKDLMQL+ P   + DT+K +      V +K+G+ P+
Sbjct: 142 DDLIATYARQAAEQGARVTIVSGDKDLMQLIGPKIGMIDTMKNKTFGEPEVFEKFGVGPD 201

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ +Q+L GDS+DN+PG+PGIG KTAALL+ E+ +LE +L  A+ IKQKKRREN++E+A
Sbjct: 202 KVIEVQSLAGDSVDNVPGVPGIGLKTAALLINEFSDLETLLAQAATIKQKKRRENLIEFA 261

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+S++LV L+ DVP+ IP+  L + + +GP+ + FLKA+ FT L  RVA T   D A
Sbjct: 262 DQARISKELVTLKQDVPVVIPVGDLSVCEIDGPKAVGFLKAMGFTTLTKRVAETTGADVA 321

Query: 298 NIEPVVLDI---NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           N+E   L++   +  ++KG      +DR   +      + S  +   +    PQ +  ER
Sbjct: 322 NVEATDLEVPGWDVPDHKG----RMMDRPGGMAAPDADNNSGDSPAPDGLMVPQTVADER 377

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
             ++   P+++ +Y  +   + +Q W+      G  +F   T ++DA  ++ + I++S  
Sbjct: 378 AARIGAIPVDSSAYETVTTLEQLQPWIDAAYEKGYVAFDTETTSLDAMQAELVGISLSCK 437

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK-------EILSYLKKFFENEHFLKIGH 467
             K          +I L+    +                 + L  LK   E+   LKI  
Sbjct: 438 PGK--------ACYIPLTHKDGEGDLLGGGGLLPDQIPLDDALKALKPMLEDRGILKIAQ 489

Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
           N+KYD LV+ R+G+ +  ++D ML+SY +D+G+  + +  ++++WL +     KE+  S 
Sbjct: 490 NLKYDWLVMTRHGVDVDPYDDTMLLSYTVDAGKGGNGMDELSERWLGHKPIPFKEVCGSG 549

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           KS I  DK++  +   +A E+++V L+LWL L+P+L  + +  VYE L++PM+ V+++ME
Sbjct: 550 KSMITFDKVAIDKATAYAAEDADVTLRLWLTLKPRLASDHMATVYETLERPMVPVLARME 609

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D+ +L ++S + ++   +LE  IY+L+GE FN+ SPKQLGDILF K+  P G K
Sbjct: 610 KRGISVDRQMLSRLSGDFAQGAAALESEIYELAGETFNVGSPKQLGDILFGKMGLPGGKK 669

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTG W T+AQ LE +    +P+   I+EWRQLSK+KSTY D+LP +IN  T+RVHT YS
Sbjct: 670 TKTGAWSTSAQVLEDLAAEGHPLPSKIVEWRQLSKLKSTYTDALPGYINPETKRVHTSYS 729

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
           LA+T TGRL+S EPNLQNIP++T+ G+KIR+AFI+   +KLISADYSQIELR+LAH+A I
Sbjct: 730 LAATTTGRLSSSEPNLQNIPVRTEAGRKIRQAFIAEKGQKLISADYSQIELRVLAHMADI 789

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + FE+ LDIH M A+E+FG  IE + P +RR AK INF IIYGIS F LA QL I 
Sbjct: 790 PQLKKAFEDGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAFGLANQLGIS 849

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA DYIK YF RFPGI +Y+E  K  V  +GYV TIFGR+ HY E+N+   ++R   E
Sbjct: 850 RGEAGDYIKTYFQRFPGIKDYMEAVKKQVHADGYVTTIFGRKAHYPEVNTKNPNMRAFYE 909

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAAINAPIQGSAADI RRAM+ +   L   KL  +MLLQ+HDEL+FEVPE+++     +I
Sbjct: 910 RAAINAPIQGSAADILRRAMVRMEDRLTASKLDAQMLLQVHDELIFEVPEDQVEATIPLI 969

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ME AC P +   VPL+V+ + ++NW E
Sbjct: 970 KDVMENACDPALKFSVPLQVDARAADNWDE 999


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/983 (46%), Positives = 646/983 (65%), Gaps = 11/983 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNS---RKESI 57
           +  ++HL LVDGS+FI+RA++A P L+RK DGLPV A++GFCNMLWKLLQ      +   
Sbjct: 14  LTADDHLILVDGSTFIFRAYHALPPLTRKPDGLPVGAVSGFCNMLWKLLQEGLTPEEGDE 73

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ A TFRNEIYP+YKA+RP  PE L+PQ  L+R AT+AF +  IE +GFEA
Sbjct: 74  PTHFAVIFDHSAQTFRNEIYPEYKAHRPDPPEDLVPQFGLIREATRAFSVHCIEQEGFEA 133

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   A ++G  VTI+S DKDLMQL+ P   + DT+K +      V +K+G+ P+
Sbjct: 134 DDLIATYAREAAEQGARVTIVSGDKDLMQLIGPKVGMIDTMKNKTFGEAEVFEKFGVGPD 193

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ +Q+L GDS+DN+PG+PGIG KTAALL+ E+G+LE +L  A  IKQ KRREN++E+A
Sbjct: 194 KVIEVQSLAGDSVDNVPGVPGIGLKTAALLINEFGDLETLLAKADTIKQNKRRENLIEFA 253

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+SR+LV L+ DVP+ +P+  L +   +GP+ + FLKA+ FT L  RVA     D  
Sbjct: 254 DQARISRQLVTLKQDVPVEVPVGELSVTGIDGPKALGFLKAMGFTTLTRRVADVTGADMD 313

Query: 298 NIEPVVLDI---NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            ++   L +   +  ++KG  +E     D+    ++  S  D     +    PQ +   R
Sbjct: 314 AVDAADLKVPGWDVPDHKGRIMERPGGGDSVAAEAE-KSPDDADPDTSGLLVPQTVADAR 372

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            Q +   P+++ +Y  + + + +++W       G  SF   T ++DA  ++ + +++ST 
Sbjct: 373 AQSIRAIPVDSSAYETVTSLERLKEWCDAAFEKGYVSFDTETTSLDAMQAELVGVSLSTE 432

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K      +  +  +  +             K+ L  LK   E+   LKI  N+KYD L
Sbjct: 433 PGKA-CYVPLGHVDGEGDLLGGGGLVEGQIPLKDALDVLKPMLEDRSVLKIAQNLKYDWL 491

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           V+ RYGI +  F+D ML+SY +D+G+  + +  ++++WL +     KEI  S KS I  D
Sbjct: 492 VMTRYGIDITPFDDTMLLSYTVDAGKGGNGMDELSERWLDHKPIPFKEICGSGKSMITFD 551

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K++  +   +A E+++V L+LWL+L+P+L  E++  VYE L++PM+ V+++ME  GI +D
Sbjct: 552 KVAIDKATAYAAEDADVTLRLWLILKPRLASERMATVYETLERPMVPVLARMEKRGISVD 611

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           + +L ++S E ++ +   E  IY+L+GE FN+ SPKQLGDILF K+  P G KTKTG W 
Sbjct: 612 RQMLSRLSGEFAQGMAGKESEIYELAGENFNIGSPKQLGDILFGKMGLPGGKKTKTGAWS 671

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+AQ LE +    + +   I+ WRQLSK+KSTY D+LP +IN  T RVHT Y+LA+T TG
Sbjct: 672 TSAQVLEDLAAEGHELPSRIVSWRQLSKLKSTYTDALPGYINPETGRVHTSYALAATTTG 731

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIP++T+ G+KIR+AFI+    KLISADYSQIELR+LAH+A I  L + F
Sbjct: 732 RLSSSEPNLQNIPVRTEEGRKIRKAFIAEKGHKLISADYSQIELRVLAHMADIPQLKKAF 791

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ LDIH M A+E+FG  IE + P +RR AK INF IIYGIS F LA QL I R EA DY
Sbjct: 792 DDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINFGIIYGISAFGLANQLGISRGEAGDY 851

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           IK YF RFPGI +Y+E  K  V  NGYV TIFGR+ HY E+N+   ++R   ERAAINAP
Sbjct: 852 IKTYFERFPGIKDYMEAIKKQVHANGYVTTIFGRKAHYPEVNTKNPNMRAFYERAAINAP 911

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI RRAM+ +   LE  KL  +MLLQ+HDEL+FEVP+ ++ T   +I   ME A
Sbjct: 912 IQGSAADILRRAMVRMENRLEGSKLDAQMLLQVHDELIFEVPDAQVETTIPVIKDVMENA 971

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
           C P + L VPL+V+ + +NNW E
Sbjct: 972 CDPALKLSVPLQVDARAANNWDE 994


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/980 (46%), Positives = 641/980 (65%), Gaps = 21/980 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           + + +HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNMLWK++Q    +     
Sbjct: 14  LTENDHLILIDGSTFIFRAYHALPPLTRKPDGLPVGAVSGFCNMLWKMMQEGPTKEEGDE 73

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD    TFRN+ YP+YKA+RP  PE L PQ  L+R AT+AFG+PAIE QG+EA
Sbjct: 74  PTHFAVIFDKSGKTFRNDFYPEYKAHRPPPPEDLRPQFGLIRQATRAFGVPAIEQQGYEA 133

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   AE +G  VTI+S DKDLMQLV+    + DT+K + I    V +K+G+ PE
Sbjct: 134 DDLIATYARQAEAQGARVTIVSGDKDLMQLVTDKIGMVDTMKNKIIGKPEVFEKFGVGPE 193

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K+V +Q+L GDS+DN+PG+PGIG KTAALL+ E+G+L+ +L  A  IKQKKRREN++E+A
Sbjct: 194 KVVEVQSLAGDSVDNVPGVPGIGLKTAALLINEFGDLDTLLEQAETIKQKKRRENLIEFA 253

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E AR+S++LV L   VP+  P+E   + D +G + + FLKA+ FT L  +VA        
Sbjct: 254 EQARISKRLVQLEEAVPVETPVEDFSVCDVDGAQAVGFLKAMGFTSLTKKVADKTGAVLE 313

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           NIE   + I   E+     E   D    ++   +              T   L      +
Sbjct: 314 NIEAADVVIEGWESTAKPAEQAEDSAGELEGKAW--------------TAAPLAENVAAE 359

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +S  PI+N +Y  +   + +++W+ +   +G  +    TD ++A  S  + +++S    K
Sbjct: 360 ISALPIDNSAYETVSTVERLKEWIAEAYEVGYVAVDTETDALNAMESGLVGVSLSCTPGK 419

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +  +  +  +              E ++ LK   E+   LKI  N+KYD LVL 
Sbjct: 420 A-CYIPLAHVDGEGDLLGGGALLEGQIPLAEAITLLKPMLEDPAVLKIAQNMKYDWLVLK 478

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           RYG+ M  F+D ML+SY LD+G   + +  ++Q+WL++T    KE+  S KS I  DK+ 
Sbjct: 479 RYGVEMAPFDDTMLLSYALDAGMGGNGMDELSQRWLNHTPIPFKEVCGSGKSQISFDKVP 538

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E++  VYERL++PM+  +++ME  GI ID+ +
Sbjct: 539 LDKATAYAAEDADVTLRLWKILKPRLAAEEMTVVYERLERPMVATLAKMERRGISIDRQM 598

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  +S E ++    LE  I+D++GE FN+ SPKQLG+ILF K+  P G KTKTG W T+A
Sbjct: 599 LSLLSGEFAQGAARLESEIHDVAGEIFNVGSPKQLGEILFGKMGLPGGKKTKTGAWSTSA 658

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+ +    + +   I+EWRQLSK+KSTY D+LP+ IN+ T RVHT +SLAST TGRL+
Sbjct: 659 SVLDDLAAQGHELPSKIVEWRQLSKLKSTYTDALPSFINQETGRVHTSFSLASTSTGRLS 718

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPN+QNIPI+T  G+KIR+AFI+   KKLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 719 SSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISADYSQIELRVLAHMADIPQLKQAFADG 778

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIH M A+E+FGV IE + P +RR AK INF IIYGIS F LA QL I R EA DYIK 
Sbjct: 779 LDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAFGLANQLGIARGEAGDYIKT 838

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E+TK FV  NGYVETIFGRR HY ++N+   ++R   ERAAINAPIQG
Sbjct: 839 YFERFPGIKDYMEETKKFVHANGYVETIFGRRAHYPDVNTKNPNMRQFYERAAINAPIQG 898

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI RRAM+ + + LE   L  +MLLQ+HDEL+FE+PE+++    ++++ +MEKA  P
Sbjct: 899 SAADIIRRAMVRMDEVLETANLDAQMLLQVHDELIFELPEDQVDETKKLVIATMEKATEP 958

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            + L VPLKV  + ++NW+E
Sbjct: 959 ALQLSVPLKVEAEAADNWEE 978


>gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1]
 gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
          Length = 994

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/988 (46%), Positives = 646/988 (65%), Gaps = 19/988 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNS---RKESI 57
           +  ++HL LVDGS+FI+RA++A P L+RK DGLPV A+AGFCNMLWKLL       +   
Sbjct: 14  LTADDHLILVDGSTFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLWKLLTEGLTPEEGDE 73

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ A TFRN+IYP YKA RP+ PE L+PQ  L+R AT+AF +  IE +GFEA
Sbjct: 74  PTHFAVIFDHSAKTFRNDIYPAYKAQRPEPPEDLVPQFGLIREATRAFSVACIEQEGFEA 133

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   A   G  VTI+S DKDLMQL+ P   + DT+K +      V++K+G+ P+
Sbjct: 134 DDLIATYARQAADAGARVTIVSGDKDLMQLIGPRIGMIDTMKNKIFGEAEVVEKFGVGPD 193

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ +QAL GDSIDN+PG+PGIG KTAA L+ E+G+LE +L  A  IKQ KRREN++E+A
Sbjct: 194 KVIEVQALAGDSIDNVPGVPGIGIKTAAQLIGEFGDLEALLARADTIKQTKRRENLIEFA 253

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E AR+SRKLV L+ DVP+  P+  L +   +GP+ + FLKALEFT L  RVA     D A
Sbjct: 254 EQARISRKLVTLKQDVPVETPVGDLAVTSVDGPKAVGFLKALEFTTLTRRVAEATGADIA 313

Query: 298 NIEPVVLDI---NTTENKGIAIE---TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            IEP+ LDI   +  + KG  +E      DR T       SS  D+     +  TPQ L 
Sbjct: 314 AIEPLDLDIPGWHRPDGKGRQMERAEAAADRPTAA-----SSAPDELPA-AAGMTPQALA 367

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             R +     PI+   Y  + +   ++ WV +    G  +F   T ++DA  ++ + +++
Sbjct: 368 AARAEAAKAEPIDRGVYETVTSLDRLKAWVAEAVETGLVAFDTETTSLDAMQAELVGVSL 427

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +T   K      +  +  +  +              E L  L+   E+   LKI  N+KY
Sbjct: 428 ATAPGKA-CYVPLAHVDGEGDLLGGGGLVEGQIPLAEALDVLRPMLEDAGVLKIAQNLKY 486

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           D LV+ RYG+ +  ++D ML+SYVLD+G+  + +  +A++WL +T    KE+  S K+ +
Sbjct: 487 DWLVMARYGVEIAPYDDTMLLSYVLDAGKGGNGMDELAERWLDHTPIPFKEVAGSGKAMV 546

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             DK+   +   +A E+++V L+LW +L+P+L+ E++  VYE L++PM+ V+++ME  GI
Sbjct: 547 TFDKVPIDKATAYAAEDADVTLRLWRVLKPRLVAERMATVYETLERPMVPVLARMERRGI 606

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S + ++ + +LE  I+ L+GE FN+ SPKQLGDILF K+  P G KTKTG
Sbjct: 607 SVDRQMLSRLSGDFAQGMAALEAEIHALAGESFNIGSPKQLGDILFGKMGLPGGKKTKTG 666

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            W T+   L+ +    + +   I+ WRQLSK+KSTY+D+LP++I+  T+RVHT YSLAST
Sbjct: 667 AWSTSVSVLDDLAAEGHELPSKIVAWRQLSKLKSTYSDALPSYIHPETKRVHTSYSLAST 726

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIP++T+ G+KIR+AF++   +KLISADYSQIELR+LAH+A I  L 
Sbjct: 727 TTGRLSSSEPNLQNIPVRTEEGRKIRKAFVADKGRKLISADYSQIELRVLAHMADIPQLK 786

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F + LDIH M A+E+FGV IE + P +RR AK INF IIYGIS F LA QL + R EA
Sbjct: 787 QAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAFGLAAQLGLSRGEA 846

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            DYIK YF RFPGI +Y+E  K  V   GYV T+FGR+ HY ++N+   S+R   ERAAI
Sbjct: 847 GDYIKTYFERFPGIRDYMEAIKKEVHTKGYVTTVFGRKAHYPDVNTSNPSLRAFYERAAI 906

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI RRAM+ +  +L   KL  +MLLQ+HDEL+FEVPE+++     ++   M
Sbjct: 907 NAPIQGSAADIIRRAMVRMDAALAAAKLDAEMLLQVHDELIFEVPEDQVEATIPVVRRVM 966

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A  P + L VPL+V+ + ++NW E +
Sbjct: 967 ETATEPALTLSVPLQVDARAADNWDEAH 994


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/989 (45%), Positives = 646/989 (65%), Gaps = 30/989 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M K +HLFLVDGS++I+RA++A P L+RK DGLPV A++GFCNMLWKL++ SR  S+   
Sbjct: 1   MNKGDHLFLVDGSAYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLVEESRDTSVGVA 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ + TFRNE+Y DYKANR   PE L+PQ  L+R A +AF +P IE QGFEA
Sbjct: 61  PTHFAVIFDHSSTTFRNELYADYKANREAPPEDLVPQFALIREAVRAFDLPCIEKQGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATYT  A + G  VTI+S+DKDLMQLV P   LYD +K++++  + V +K+G+ P+
Sbjct: 121 DDLIATYTRHAVEAGGDVTIVSSDKDLMQLVGPRVILYDQMKDKRLGPDEVKEKFGVHPD 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GD+ DN+PG+PGIG KTAA LL EYG+LE +L  A+ IKQ KRREN++ +A
Sbjct: 181 KMIDLQALVGDTSDNVPGVPGIGPKTAAQLLDEYGDLETLLERAAEIKQNKRRENLIAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + ARLS+ LV L  + P+ +PL+ L + + +G +LISFLKA+EFT L  R A     DA+
Sbjct: 241 DQARLSKTLVTLDQNTPLDVPLDDLFIHEPDGEKLISFLKAMEFTSLTRRAAAQLGTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E   + ++T            D D            D    +    TP  L   R   
Sbjct: 301 EVESAAIAVDTPARG-------PDLDPAGSAVAAPGAGDAALPL----TPAALVESRRAA 349

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +    ++ +Y  I +   +  W+ +    G  +F     ++ A     + ++ +T   +
Sbjct: 350 AAASVFDHSAYVTIRDAATLLAWMDEARETGLLAFDTEASSLSAMKCDLVGVSFAT---R 406

Query: 418 DDTSFKVETIFID-------LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
              +  V    +        LS    +D  G      E L+ LK   E++  LKIG N+K
Sbjct: 407 AGRAAYVPLAHVSPSGEADLLSDKAVEDEIGPQLPIDEALAILKPVLEDDAVLKIGQNVK 466

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSY---TRKEILKSRK 525
           YD LV+ R+GI+M  F+D ML+SY LD+  S   H +  +++++L +   + KE+  S K
Sbjct: 467 YDYLVMRRHGITMAPFDDTMLISYALDASASLAGHGMDELSERFLGHKPMSYKELCGSGK 526

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            + PI   +  +V  +A E+++V L+LW +L+P+L+ E L  VYERL++P++ V+++ME 
Sbjct: 527 GARPIAACAIDKVTAYAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEE 586

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI++D+ +L ++S   ++    LE  I +++GE FN  SPKQLG++LF KL  P G KT
Sbjct: 587 RGIKVDRQILSRLSGRFAQKQAGLEAEIAEIAGETFNPGSPKQLGEVLFGKLGLPGGKKT 646

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           K+GQW T  + LE +    +P+ + I++WRQL+K+K TY D+LP H++ +  R+HT YS+
Sbjct: 647 KSGQWSTDVRVLEDLAAEGHPLPRRIVDWRQLTKLKGTYTDTLPGHMDAQG-RIHTSYSM 705

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           AST TGRL+S EPNLQNIP++T+ G+ IR AF++P    L+SADYSQIELRILAHIA I 
Sbjct: 706 ASTTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPAGHSLVSADYSQIELRILAHIADIP 765

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F   LDIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR
Sbjct: 766 QLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLSIPR 825

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YIKRYF RFPGI +Y++ TK F +++G+VET+FGRR+HY +I SP +S+R  NER
Sbjct: 826 DEAGTYIKRYFERFPGIRDYMDSTKAFAKEHGHVETLFGRRVHYPDIRSPNASVRAFNER 885

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAPIQG+AADI RRAMI +  +L D  L+ +MLLQ+HDEL+FEV +++I     ++ 
Sbjct: 886 AAINAPIQGTAADIIRRAMIRMEPALADAGLSARMLLQVHDELIFEVEDDQIDATLPVVR 945

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME+A LP + L VP++V+ K + NW E
Sbjct: 946 RVMEEAALPVVQLSVPIEVDAKAAANWDE 974


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/985 (45%), Positives = 650/985 (65%), Gaps = 23/985 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++  +H+ L+DGS++I+RA++A P L+R  D LPV A+AGFCNMLWKL++        +H
Sbjct: 7   LEAGDHVVLIDGSAYIFRAYHALPPLTRPSDKLPVGAVAGFCNMLWKLVRAQGFSPAPTH 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR +IYP YKA RP +PE L+PQ PL+R AT+AF +  +E   +EADD+
Sbjct: 67  LAVVFDKSEQTFRKDIYPLYKAQRPDLPEDLIPQFPLIREATRAFDLACVEQDKYEADDL 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +ATY  +A+ +G  VTIIS+DKDLMQLV  +   +YD +K+  I +E V +K+G+ PEK+
Sbjct: 127 MATYAELAKAKGALVTIISSDKDLMQLVEGSRVRMYDPMKDRAIGVEEVFEKFGVGPEKV 186

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V +Q+L GDS+DN+PG+PGIG KTAA LL EYG+L+ +L  A  IKQ KRREN++E+A+ 
Sbjct: 187 VDVQSLAGDSVDNVPGVPGIGIKTAAQLLAEYGDLDTLLARAEEIKQTKRRENLIEFADQ 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           ARLSR+LV L+ DVP+ +PL+ + + +  G +LI+FLKA+EF  L  RVA TY+ +AA I
Sbjct: 247 ARLSRELVTLKRDVPLEVPLDDIAVVEPEGKKLIAFLKAMEFNTLTRRVAETYEIEAAAI 306

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           EP    +    ++   +   +D DT    S      +  +   S  TPQ L   R+++ +
Sbjct: 307 EPDS-GLKAGGHESDELRAGLDPDT--DRSAIPEGIEPPAPGESGLTPQALSAARIKEAT 363

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P++   Y  +   + +++WV +   +G  +    T  +D   +  +  +++T      
Sbjct: 364 ATPVDRSKYETVTTLERLKEWVARAFDLGFVAVDTETTGLDPMQADIVGFSLATAPN--- 420

Query: 420 TSFKVETIFIDLSVHTSQDST--GKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYD 472
                E  ++ LS H   D     +  L  +I     ++ +K   E+   LKIG N+KYD
Sbjct: 421 -----EACYVPLS-HKGGDEGLFSEGLLPDQIPIPDAVAAIKPLMEHPGVLKIGQNLKYD 474

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
            L+L R GI +  ++D ML+SYVLD+G S H +  ++ +WL +T    +E+    K  I 
Sbjct: 475 WLILKRLGIELGPYDDTMLVSYVLDAGASPHGMDPLSMRWLGHTPIKFEEVCGKGKGQIC 534

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            D+ +  +  ++A E+++V L+LW +L+P+L  E    VYE L++P++ V++QME  GI 
Sbjct: 535 FDRAAIDKATDYAAEDADVTLRLWRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGIT 594

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID+ +L ++S E ++ +  LE  I +++GE FN  SPKQLGDILF K++ P G KT TG 
Sbjct: 595 IDRQMLSRLSGEFAQGMGRLEAEISEMAGETFNPGSPKQLGDILFGKMQIPGGRKTPTGA 654

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           W T A  LE++    + + + IL+WRQL K+KSTY D+LP ++NK T RVHT ++LA+T 
Sbjct: 655 WSTGADVLEELAEQGHELPRRILDWRQLQKLKSTYTDALPTYVNKETGRVHTSFALAATT 714

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S EPNLQNIP++T+ G+KIR+AFI+ P  KL+SADYSQIELR+LA IA    L Q
Sbjct: 715 TGRLSSSEPNLQNIPVRTEEGRKIRKAFIAAPGHKLVSADYSQIELRLLAEIADTPSLRQ 774

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F++ LDIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA 
Sbjct: 775 AFQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIPREEAG 834

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YIKRYF RFPGI  Y+++T+NF R++GYVET+FGRR HY +I++   SIR  NERAAIN
Sbjct: 835 AYIKRYFERFPGIRAYMDETRNFAREHGYVETLFGRRCHYPDISAKNPSIRAFNERAAIN 894

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A +QGSAADI RRAM  +  +LE   L+ +MLLQ+HDEL+FEVP++EI     ++  +ME
Sbjct: 895 ARLQGSAADIIRRAMARMDAALEKAGLSARMLLQVHDELIFEVPDDEIAATIPVVRETME 954

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A  P + L+VPLKV+ + + NW E
Sbjct: 955 LAPFPAVALKVPLKVDARAAENWDE 979


>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
 gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
          Length = 971

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/987 (46%), Positives = 656/987 (66%), Gaps = 31/987 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS- 59
           M+K +HLFLVDGS++I+RA++A P L+RK DGLPV A++GFCNMLWKL++ SR  ++ + 
Sbjct: 1   MKKGDHLFLVDGSAYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLVEESRDTNVGAV 60

Query: 60  --HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             HFAVIFDY + TFRNE+Y +YKANR + PE L PQ  L+R A +AF +P IE +G+EA
Sbjct: 61  PTHFAVIFDYSSTTFRNELYSEYKANREEPPEDLRPQFGLIRDAVRAFDLPCIEKEGYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   A   G  VTI+S+DKDLMQLV P   LYD +K++++  + V +K+G+ PE
Sbjct: 121 DDLIATYATQAVAAGGDVTIVSSDKDLMQLVGPRVILYDQMKDKRLGPDEVKEKFGVYPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GD+ DN+PGIPGIG KTAA LL+EYG LE +L  A+ IKQ KRREN++E+A
Sbjct: 181 KMIDLQALVGDTSDNVPGIPGIGPKTAAQLLEEYGTLEELLERATEIKQNKRRENLIEFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             ARLS+KLV L  + P+   L+ L + + +G +L++FLKA+EFT L  RVA T D DA+
Sbjct: 241 AQARLSKKLVTLDCETPLDTELDDLYIHEPDGEKLVAFLKAMEFTTLTRRVAATLDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS--EQTPQKLFLERL 355
            +E   L+I                +   +     +  +  S  +S    TPQ+L  +  
Sbjct: 301 EVESAKLEI----------------EDAPRGPDLDAAKNPASPGDSVFPATPQRLAAKLK 344

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +   I+  +Y  I +   + +W+ +    G  +F   T  + A+    + ++++ + 
Sbjct: 345 DDAAGQAIDRSAYVTIRDIDTLNRWLDRARDRGVMAFDTETSELSAYKGHLVGVSMA-IT 403

Query: 416 QKDDTSFKVETIFIDLSVHTSQDST---GKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             +     +  +  D  + T  DS    G      E L  LK   E++  LKIG N+KYD
Sbjct: 404 PGEAAYVPLGHVAADADLLTDPDSAEALGGQIPMDEALVALKDVLEDKSILKIGQNVKYD 463

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLD--SGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
            LV+ ++GI+M   +D ML+SY LD  SG + H +  +++++L +   + KE+  S +S+
Sbjct: 464 LLVMLQHGIAMTPIDDTMLISYALDASSGLAGHGMDELSERFLGHKPISYKELCGSGRSA 523

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            PI  +   +V E+A E+++V L++W +L+P+L  E L HVYERL++P+  V+++ME  G
Sbjct: 524 KPIAAVEIDRVTEYASEDADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRG 583

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I +D+ +L ++S   ++   +LE+ I  ++GE+FN  SPKQLG+ILF KL  P G KTK+
Sbjct: 584 IMVDRQILSRLSGNFAQKQAALEDEIAKMAGEEFNPGSPKQLGEILFGKLGLPGGKKTKS 643

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQW T A+ LE +    + + + +++WRQL+K+K TY D+LP+H+++   R+HT +S+AS
Sbjct: 644 GQWSTDARVLEDLAAEGHELPRRVVDWRQLTKLKGTYTDTLPHHMDE-NGRIHTSFSMAS 702

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S EPNLQNIP++T+ G+ IR AF++P  KKL+SADYSQIELRILAHIA I  L
Sbjct: 703 TTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPKGKKLLSADYSQIELRILAHIADIPQL 762

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F+N +DIH M A+E+F V +E + P +RR AK INF IIYGIS F LA QL IPR E
Sbjct: 763 KDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINFGIIYGISAFGLANQLAIPREE 822

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YIKRYF RFPGI +Y++KTK F +++GYVET+FGRR HY +I +    IR+ NERAA
Sbjct: 823 AGQYIKRYFERFPGIRDYMDKTKAFAKKHGYVETLFGRRAHYPDITAKNPQIRSFNERAA 882

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI RRAM+ +  +L D  L+  MLLQ+HDELVFEV E+EI    +++ + 
Sbjct: 883 INAPIQGTAADIIRRAMVRMEGALADANLSAMMLLQVHDELVFEVEEDEIDETIEVVTNI 942

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A  P++ L VPL+V  K + NW+E
Sbjct: 943 MEAAASPRVILSVPLEVEAKAALNWEE 969


>gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255]
 gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255]
          Length = 1010

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/993 (45%), Positives = 654/993 (65%), Gaps = 36/993 (3%)

Query: 6    HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++  K    +H A+IF
Sbjct: 32   HVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPKNDRPTHLAIIF 91

Query: 66   DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            D   VTFRN++YP YKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IATY 
Sbjct: 92   DKSEVTFRNKLYPAYKAHRPPAPDDLIPQFALIREAVKAFDLPCLEQIGFEADDLIATYV 151

Query: 126  YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
              A + G   TI+S+DKDLMQLV+    +YDT+K+ ++ I  VI+K+G+PPEK+V +QAL
Sbjct: 152  RQACERGATATIVSSDKDLMQLVNGCVTMYDTMKDRRLGIAEVIEKFGVPPEKVVEVQAL 211

Query: 186  TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
             GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A+ IKQ KRRE ++E AE AR+SR+
Sbjct: 212  AGDSVDNVPGVPGIGVKTAAQLITEYGDLDTLLARATEIKQPKRREALIENAEKARISRQ 271

Query: 246  LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
            LV+L   V + +PL+ L +++ +  +LI+FLKA+EFT L  RVA   + +AA IEP   D
Sbjct: 272  LVLLDDHVALDVPLDDLAVQEPDARKLIAFLKAMEFTTLTKRVADYSEVNAAEIEP---D 328

Query: 306  INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE-----------QTPQKLFLER 354
               T  +   +        T  T      SD  +K               +TP  L   R
Sbjct: 329  AKHTSGRSAMVAKA---SATALTGDLFGSSDSVAKGTPAGTAKATGDTKMKTPAALAAAR 385

Query: 355  LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            L+ +   P+  D+Y  I     ++ W+ +++  GS +F+ +  T+D   ++   IA++  
Sbjct: 386  LETVRALPVRPDAYETIRTLDRLRDWIARIDDNGSFAFEALAPTIDPMQTELSGIALALA 445

Query: 415  DQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIG 466
                         +I LS   S DS G             ++ L  LK   E+   LKIG
Sbjct: 446  PN--------HACYIPLSHKQSGDSAGLFAAGLAPDQIAIRDALELLKPILESRGHLKIG 497

Query: 467  HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS 523
             N+K+  ++L ++GI M+  +DI L+SY LD+GR SHD+AS+A++WL +   +  E+  S
Sbjct: 498  LNVKFSAVLLAQHGIVMQNHDDIELISYALDAGRGSHDLASLAKRWLGHATVSHGELTGS 557

Query: 524  RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
             ++ +  D+++  +   +A E +++ L+LW +L+P+L+ E++  VYE L++PMI  ++QM
Sbjct: 558  GRNRLAFDQVAIDRATAYAAEYADMTLRLWQVLKPRLVAERMNTVYETLERPMIATLAQM 617

Query: 584  EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
            E  GI ID+ +L ++S E +++   LE  I  L+GE  N+ SPKQ+G+I+F K+  P G+
Sbjct: 618  ERRGITIDRQVLSRLSGEFAQSAARLEAEIQQLAGEPINVGSPKQIGEIMFGKMGLPGGS 677

Query: 644  KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
            KTKTG W T+AQ L+++    +   + IL+WRQ+SK+KSTY D+LP +++ +T+RVHT Y
Sbjct: 678  KTKTGAWSTSAQILDELAEQGHDFPRKILDWRQVSKLKSTYTDALPEYVHPQTRRVHTTY 737

Query: 704  SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
            +LA+T TGRL+S EPNLQNIP++ + G+KIRRAFI+ P  KL+SADYSQIELR+LA IA 
Sbjct: 738  ALAATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIAD 797

Query: 764  ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
            I  L Q F + LDIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F LA QL I
Sbjct: 798  IPVLKQAFRDGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAFGLANQLGI 857

Query: 824  PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            PR EAA YIK+YF RFPGI  Y++ T+ F R++GYV T+FGR+ HY +I SP  S R  N
Sbjct: 858  PREEAAAYIKKYFERFPGIRAYMDATREFCREHGYVTTLFGRKCHYPDIKSPNPSHRAFN 917

Query: 884  ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
            ERAAINA +QGSAADI RRAM  +  +L    L+ +MLLQ+HDEL+FEVP++E+     +
Sbjct: 918  ERAAINARLQGSAADIIRRAMARMDDALAARNLSARMLLQVHDELIFEVPDDEVAATLPV 977

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            + H M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 978  VQHVMQDAPFPAVLLSVPLQVDARAADNWDEAH 1010


>gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
 gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
          Length = 1033

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1012 (44%), Positives = 658/1012 (65%), Gaps = 48/1012 (4%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P LSRK DGL VNA+ GFCNMLWKLL++   ++  +H A
Sbjct: 28   KGDHIFLVDGSSYIFRAYHALPPLSRKSDGLQVNAVLGFCNMLWKLLRDMPPDNRPTHLA 87

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD    TFRNE+YP YKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 88   IIFDKSEATFRNEMYPAYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIA 147

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ +I +  VI+K+G+PP+K+V +
Sbjct: 148  TYVREACEAGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGVAEVIEKFGVPPDKVVEV 207

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ KRRE ++E AE AR+
Sbjct: 208  QALAGDSVDNVPGVPGIGIKTAAQLITEYGDLETLLARAGEIKQPKRREALIENAEKARI 267

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300
            SRKLV+L   V + +PL+ L + + +  +LISFLKA+EFT L  RVA     D +++E  
Sbjct: 268  SRKLVLLDDHVKLDVPLDELAVHEPDARKLISFLKAMEFTTLTRRVADYAQIDPSDVEAE 327

Query: 301  --------PVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQ------ 345
                    P+  ++      G       D     + ++Q S  S + S   S +      
Sbjct: 328  AALKSSPLPLAGEVGARSATGGGTAASGDLFSEQVPSTQPSPASGRGSAQQSGEGGALNA 387

Query: 346  ------------TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
                        +PQ L   R +   + P++  +Y  I    ++  W+ ++   G  +  
Sbjct: 388  GRGRDGRPGEVLSPQILAARRAETARKIPVDRTAYKTIRTLDELHGWIARIHDAGFVAVD 447

Query: 394  IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTL 445
             I  ++D   ++   IA++            +  +I L    + D +G            
Sbjct: 448  AIATSIDPMQAELCGIALALAPN--------DAAYIPLGHRQTGDGSGLFAAGLAPDQLG 499

Query: 446  TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDI 505
             +E L  LK   E+    KIG NIK+  ++L ++GI++R  +D+ LMSY LD+GR SH +
Sbjct: 500  AREALDALKPLLESAGLAKIGFNIKFTAVLLAQHGITLRNIDDLQLMSYALDAGRGSHGL 559

Query: 506  ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             ++++  L +T     E+  S K+ I  D++   +  E+A E ++V L+LW +L+P+L+ 
Sbjct: 560  DALSESNLGHTLHALGELTGSGKAKIGFDQVPIERATEYAGERADVALRLWRVLKPRLVA 619

Query: 563  EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            E+++ VYE L++P++ V+++ME  GI ID+ +L ++SA+ ++    +E  I +L+GE  N
Sbjct: 620  ERMMAVYETLERPLVGVLARMERRGISIDRSVLSRLSADFAQTAARIEAEIRELAGEDIN 679

Query: 623  LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
            + SPKQLGDILF K+  P G+KTKTG W T+AQ L+++    +   + IL+WRQ+SK++S
Sbjct: 680  IGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRS 739

Query: 683  TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
            TY D+LPN+++ +TQRVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P 
Sbjct: 740  TYTDALPNYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIASPG 799

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             KL+SADYSQIELR+L+ +A++  L + F++ +DIH M A+E+FGV +E +  ++RR AK
Sbjct: 800  YKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAK 859

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             INF IIYGIS F LA QL IPR EA  YIKRYF RFPGI  Y+++T++F R +GYVET+
Sbjct: 860  AINFGIIYGISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRAHGYVETL 919

Query: 863  FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            FGR+ HY +I +   SIR  NERAAINA +QGSAADI RRAM  +  +L + KL+ +MLL
Sbjct: 920  FGRKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIRRAMGRMEDALAEKKLSAQMLL 979

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            Q+HDEL+FEVP++E+     ++ H M+ A  P + L VPL+V+ + ++NW E
Sbjct: 980  QVHDELIFEVPDDEVAATLPVVRHVMQDAPFPAVLLNVPLQVDARAADNWDE 1031


>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
 gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
          Length = 979

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/988 (45%), Positives = 641/988 (64%), Gaps = 42/988 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++K +HLFLVDGS +I+RA++A P L+RK DG+PV A+AGFCNML+KL+++++ E   +H
Sbjct: 18  LKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGMPVGAVAGFCNMLYKLIEDTKDEFEPTH 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD  A TFRN+IYP+YKANR +  E L PQ  LVR AT+AFG+P IE +G+EADDI
Sbjct: 78  LAVIFDAAAKTFRNDIYPEYKANRVEPSEDLRPQFALVRDATRAFGVPCIEKKGYEADDI 137

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IATY  +A + G  VTI+S+DKDLMQLV+    + DT+K + I  E VI+K+G+PPEK+V
Sbjct: 138 IATYARLAHEAGARVTIVSSDKDLMQLVNDNVDMLDTMKLKTIAREQVIEKFGVPPEKVV 197

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GDS DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ+KRREN++E+AE A
Sbjct: 198 DVQALAGDSTDNVPGVPGIGIKTAAQLIGEYGDLETLLARAGEIKQQKRRENLIEFAEQA 257

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD----- 295
           R+SR+LV L  +VP+  PLE + + + +   LI F K +EF  L  RV   ++ D     
Sbjct: 258 RISRRLVELDNNVPLEEPLEGMGVREPDPETLIGFFKDMEFNTLTRRVGERFNIDVDAIP 317

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           AA    ++ D       G   E + ++ T  +T++  +       I+++           
Sbjct: 318 AAGKHALITDGALAAPAGE--EPKKEKQTVARTARGGTPGAVPKGIDAD----------- 364

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                   N+ +Y  +    D+ +W+ +    G  +    TD++    ++ + +++S L 
Sbjct: 365 -------FNDANYVAVTALADLDEWIARAREQGFLAVDTETDSLFPMQARLVGVSLSLLP 417

Query: 416 QKDDTSFKVETIFIDLSVHTS-----QDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNI 469
                    E  +I L           D+ G+  +  KE ++ LK   E+   LKIG N+
Sbjct: 418 G--------EACYIPLQHGAGGGLDFADAGGQPQIPLKEAIARLKPLLEDPSILKIGQNL 469

Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
           K+D  VL ++GI ++G +D MLMSY LD+G   H +  +++  L +   +  E+    K+
Sbjct: 470 KFDMTVLRQHGIQLKGLDDTMLMSYALDAGVHGHGMDELSELHLGHKPISFAEVAGKGKA 529

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            I  D++   +   +A E+++V L+LW +L+P+L+ E+ + VYE L++P++ V+++ME  
Sbjct: 530 QITFDQVPVDRATAYAAEDADVTLRLWHILKPRLVAERRVTVYETLERPLVSVLAEMERA 589

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+++D+ +L ++S + S+ +   E+ IY+L+GE+FN+ SPKQLG+ILF K     G KTK
Sbjct: 590 GVKVDKAVLARLSGDFSQKMAQYEDEIYELAGERFNIGSPKQLGEILFDKQSLEGGRKTK 649

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG W T A  LE +    + + + +L+WR LSK+KSTY D+LP +IN  T R+HT YSLA
Sbjct: 650 TGAWSTDADTLEALAAKGHELPQRVLDWRGLSKLKSTYTDALPEYINPETGRIHTCYSLA 709

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           ST TGRLAS EPNLQNIP++T+ G+KIR AF++     LISADYSQIELR+LAHIA I  
Sbjct: 710 STSTGRLASTEPNLQNIPVRTEDGRKIRTAFVAEKGNLLISADYSQIELRLLAHIADIEA 769

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F   LDIH M A+E+FGV IE +   +RR AK INF IIYGIS F LA QL IPR 
Sbjct: 770 LKKAFAEGLDIHAMTASEMFGVPIEGMESSVRRRAKAINFGIIYGISAFGLANQLGIPRQ 829

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA +YI RYF RFPGI  Y++ T++F  +NGYVETIFGRRIH   INS   + ++  ERA
Sbjct: 830 EAGEYIDRYFKRFPGIRAYMDDTRDFAHKNGYVETIFGRRIHLPAINSKNPAEKSFMERA 889

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI RRAMI + ++L D KLA +MLLQ+HDEL+FEVPE+E    S+++  
Sbjct: 890 AINAPIQGSAADIIRRAMIRMPQALADAKLAARMLLQVHDELIFEVPEKEAEKTSKVVSR 949

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M  A  P + L VPL V+ + + NW E
Sbjct: 950 IMSDAAAPAVALTVPLDVDARAAKNWDE 977


>gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
 gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
          Length = 1020

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/995 (45%), Positives = 664/995 (66%), Gaps = 34/995 (3%)

Query: 6    HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++  K+   +H A++F
Sbjct: 32   HVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPKDDRPTHLAIVF 91

Query: 66   DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            D   VTFRN++YP YKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IATY 
Sbjct: 92   DKSEVTFRNKLYPAYKAHRPPAPDDLIPQFALIREAVKAFDLPCLEQAGFEADDLIATYV 151

Query: 126  YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
              A + G   TI+S+DKDLMQLV+    +YDT+K+ ++ I  VI+K+G+PP+K++ +QAL
Sbjct: 152  RQACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRLGIPEVIEKFGVPPDKVIEVQAL 211

Query: 186  TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
             GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A+ IKQ KRRE ++E AE AR+SR+
Sbjct: 212  AGDSVDNVPGVPGIGVKTAAQLITEYGDLDTLLARAAEIKQPKRREALIENAEKARISRQ 271

Query: 246  LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
            LV+L   V + +PL+ L +++ +  +LI+FLKA+EFT L  RVA   + +AA IEP   +
Sbjct: 272  LVLLDDHVALDVPLDDLAVQEPDARKLIAFLKAMEFTTLTKRVADYSEINAAEIEPDAKN 331

Query: 306  I-NTTENKGIA----IETEIDRDTTIKTSQFSS---------LSDQTSKINSE-QTPQKL 350
              N  + K ++    +  E      I    F S         +S   +  ++E +TP  L
Sbjct: 332  ASNMIDAKALSAPSPLAGEGRGGGAISGDLFGSSDNVAKKAPVSGAKATSHTEIKTPAAL 391

Query: 351  FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               RL+ +   P+  DSY  I     ++ W+ +++  GS +F+ +  T+D   ++   ++
Sbjct: 392  AAARLEAVRALPVRPDSYETIRTLDRLRDWIARIDDNGSFAFEALAPTIDPMQAELAGLS 451

Query: 411  ISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHF 462
            ++            +  +I L    + DS G             ++ L  LK   E+   
Sbjct: 452  LALAPN--------DACYIPLGHKQAGDSAGLFAAGLAPDQIAIRDALELLKPILESGGH 503

Query: 463  LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
            LKIG NIK+  ++L ++GI M+  +D+ L+SY LD+GR SHD+AS+A++WL +T     E
Sbjct: 504  LKIGLNIKFSAVLLAQHGIVMQNHDDVELISYTLDAGRGSHDLASLAKRWLGHTTLSHGE 563

Query: 520  ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            +  S ++ + +D+++  +   +A E +++ L+LW +L+P+L+ E++  VYE L++PM   
Sbjct: 564  LTGSGRNRLAVDQVAIDRATAYAAEYADMTLRLWQVLKPRLVAERMNAVYETLERPMTAT 623

Query: 580  VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
            +++ME  GI ID+ +L ++S E+++    LE  I  L+GE  N+ SPKQ+GDI+F K+  
Sbjct: 624  LARMERRGITIDRQVLSRLSGELAQTAARLEAEIQQLAGEPINVGSPKQIGDIMFGKMGL 683

Query: 640  PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
            P G+KTKTG W T+AQ L+++    +   + IL+WRQ+SK+KSTY D+LP ++N +T+RV
Sbjct: 684  PGGSKTKTGAWSTSAQVLDELAEQGHDFPRKILDWRQVSKLKSTYTDALPEYVNPQTRRV 743

Query: 700  HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
            HT Y+LA+T TGRL+S EPNLQNIP++ + G+KIRRAFI+ P  +L+SADYSQIELR+LA
Sbjct: 744  HTTYALAATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIAAPGHRLVSADYSQIELRLLA 803

Query: 760  HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
             IA I  L Q F + LDIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F LA 
Sbjct: 804  EIADIPVLKQAFRDGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAFGLAN 863

Query: 820  QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            QL IPR EAA YIK+YF RFPGI  Y++ T++F R++GYV T+FGR+ HY +I +P  S 
Sbjct: 864  QLGIPREEAAAYIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHYPDIKAPNPSH 923

Query: 880  RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
            R  NERAAINA +QGSAADI RRAM+ +  +L   KL+ +MLLQ+HDEL+FEVP+EE+  
Sbjct: 924  RAFNERAAINARLQGSAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDEEVAA 983

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               ++ H M+ A  P + L VPL+V+ + ++NW E
Sbjct: 984  TLPVVQHVMQDAPFPAVLLSVPLQVDARAADNWDE 1018


>gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14]
 gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14]
          Length = 1014

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/991 (45%), Positives = 651/991 (65%), Gaps = 37/991 (3%)

Query: 6    HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++  K+   +H A+IF
Sbjct: 37   HVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPKDDKPTHLAIIF 96

Query: 66   DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            D   VTFRN++YP YKA+RP  P+ L+PQ  L+R A +AF +P IE  GFEADD+IATY 
Sbjct: 97   DKSEVTFRNKLYPAYKAHRPPAPDDLIPQFALIREAVKAFDLPCIEQGGFEADDLIATYV 156

Query: 126  YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
              A + G   TI+S+DKDLMQLV+    ++DT+K+ ++ I  VI+K+G+PPEK+V +QAL
Sbjct: 157  RQACERGATATIVSSDKDLMQLVTDCVTMFDTMKDRRLGIAEVIEKFGVPPEKVVEVQAL 216

Query: 186  TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
             GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  AS IKQ KRRE ++E AE AR+SR+
Sbjct: 217  AGDSVDNVPGVPGIGVKTAAQLITEYGDLETLLAQASEIKQPKRREALIENAEKARISRQ 276

Query: 246  LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
            LV+L   V + +PL+ L +++ +  +LI+FLKA+EFT L  RVA   + +AA IEP    
Sbjct: 277  LVLLDDHVALDVPLDDLAVQEPDARKLIAFLKAMEFTTLTKRVADYSEVNAAEIEP---- 332

Query: 306  INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE-----------QTPQKLFLER 354
                +N   A  T         TS     SD  +K  S            +TPQ L   R
Sbjct: 333  --DRKNASGASSTAAKASAEAVTSDLFG-SDGVAKATSAGRTRATSDTAIKTPQALAAAR 389

Query: 355  LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            L+ + + P++   Y  I     +Q W+ ++   GS   + +  T+D   ++   IA++  
Sbjct: 390  LEAVRKLPVDRTQYETIRTLDRLQHWIARIANHGSFVVEALAPTIDPMQAELSGIALALA 449

Query: 415  DQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIG 466
                         ++ L+   + DS G             ++ L  LK   E+   LK+G
Sbjct: 450  PNA--------ACYVPLNHKQAGDSAGLFAAGLAPDQIAIRDALDLLKPLLESGGHLKVG 501

Query: 467  HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
             N+K+  ++L ++GI M+  +D+ L+SY LD+GR +HD+ ++AQ+WL +T     E++ S
Sbjct: 502  FNVKFTAVLLAQHGIVMQNNDDVELISYALDAGRGAHDLEALAQRWLDHTALNYGELIGS 561

Query: 524  RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
             ++ +  D+++  +   +A E + + L+LW +L+P+L+ E++  VYE L++PMI  +++M
Sbjct: 562  GRNKLAFDQVTIDRATTYAAEYAALTLRLWQVLKPRLVAERMNSVYETLERPMIATLARM 621

Query: 584  EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
            E  GI ID+ +L ++S E ++    LE  I  L+GE  N+ SPKQ+G+I+F K+  P G+
Sbjct: 622  ERRGITIDRQVLSRLSGEFAQTAARLEAEIQKLAGEPINVGSPKQIGEIMFGKMGLPGGS 681

Query: 644  KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
            KTKTG W T+AQ L+ +    +   + IL+WRQ+SK+KSTY D+LP ++N +T RVHT Y
Sbjct: 682  KTKTGAWSTSAQILDDLAEQGHDFPRKILDWRQVSKLKSTYTDALPEYVNPQTSRVHTTY 741

Query: 704  SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
            +LA+T TGRL+S EPNLQNIP++ + G+KIRRAFI+ P  KL+SADYSQIELR+LA IA 
Sbjct: 742  ALAATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIATPGHKLVSADYSQIELRLLAEIAD 801

Query: 764  ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
            I  L Q F + LDIH M A+E+FGV +  +  ++RR AK INF IIYGIS F LA QL I
Sbjct: 802  IPVLKQAFRDGLDIHAMTASEMFGVPVTGMPGEIRRRAKAINFGIIYGISAFGLANQLGI 861

Query: 824  PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            PR EA  YIK+YF RFPGI  Y++ T++F R++GYVET+FGR+ HY +I SP  S R  N
Sbjct: 862  PREEAGTYIKKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCHYPDIKSPNPSHRAFN 921

Query: 884  ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
            ERAAINA +QG+AADI RRAM+ +  +L   KL+ +MLLQ+HDEL+FEVP++E+     +
Sbjct: 922  ERAAINARLQGTAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDDEVAATLPV 981

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + H M+ A  P + L VPL+V+ + ++NW E
Sbjct: 982  VQHVMQDAPFPAMLLSVPLQVDARAADNWDE 1012


>gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
 gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
          Length = 1032

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1012 (43%), Positives = 661/1012 (65%), Gaps = 48/1012 (4%)

Query: 5    NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL+    ++  +H A+I
Sbjct: 29   DHIFLVDGSSYIFRAYHALPPLTRKSDGLQVNAVLGFCNMLWKLLREMPPDNRPTHLAII 88

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD    TFRN++YPDYKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IATY
Sbjct: 89   FDKSEHTFRNQLYPDYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIATY 148

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               A + G   TI+S+DKDLMQLV+    +YDT+K+ +I I  VI+K+G+PPEK+V +QA
Sbjct: 149  VREACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGIAEVIEKFGVPPEKVVEVQA 208

Query: 185  LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            L GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++E AE AR+SR
Sbjct: 209  LAGDSVDNVPGVPGIGIKTAAQLINEYGDLDTLLARAGEIKQPKRREALIENAEKARISR 268

Query: 245  KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE---- 300
            +LV+L   V + +PL+ L + + +  +LISFLKA+EFT L  RVA     D +++E    
Sbjct: 269  QLVLLDDKVKLDVPLDELAVHEPDARKLISFLKAMEFTTLTRRVADYSQIDPSDVEAEAA 328

Query: 301  ------PVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQ-------- 345
                  P+  ++      G    T  D     + + Q S    + S  +S +        
Sbjct: 329  LKSSPLPLAGEVGARSATGGGTSTGGDLFSGQVPSPQPSPAGGRGSAPHSAEGGPLNAGR 388

Query: 346  ----------TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395
                      +PQ L  +R +   + P++  +Y  +    ++Q W+ ++   G+ +   I
Sbjct: 389  GRDGQPGEVLSPQILAAKRAEAARKIPVDRTAYKTVRTRDELQGWIARIHDAGAFAVDAI 448

Query: 396  TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTK 447
              ++D   ++   IA+S L   D         +I L    + D +G             +
Sbjct: 449  ATSIDPMQAELCGIALS-LGPND-------ACYIPLGHRQTGDGSGLFAAGLAPDQLGAR 500

Query: 448  EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
            ++L  L+   ++    KIG NIK+  ++L ++G+++R  +D+ L+SYVLD+GR SH + +
Sbjct: 501  DVLDALRPLLDSAGLAKIGFNIKFTAVLLAQHGVTLRNIDDVQLISYVLDAGRGSHGLDA 560

Query: 508  IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +++  L +T      +  S K+ I  D++   +  E+  E S+V L+LW +L+P+L+ E+
Sbjct: 561  LSESNLGHTLHVLGALTGSGKAKIAFDQVPIDRATEYGGERSDVALRLWRVLKPRLVAER 620

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            ++ VYE L++P++ V+++ME  GI ID+ +L ++SA+ ++    +E  I +L+GE  N+ 
Sbjct: 621  MMAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDINIG 680

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            SPKQLGDILF K+  P G+KTKTG W T+AQ L+++    +   + IL+WRQ+SK++STY
Sbjct: 681  SPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTY 740

Query: 685  ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
             D+LP +++ +TQRVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P  +
Sbjct: 741  TDALPTYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHR 800

Query: 745  LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            L+SADYSQIELR+L+ +A +  L + F++ +DIH M A+E+FGV +E +   +RR AK I
Sbjct: 801  LVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSDIRRRAKAI 860

Query: 805  NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            NF IIYGIS F LA QL IPR EA  YIKRYF RFPGI  Y+++T++F R +GYVET+FG
Sbjct: 861  NFGIIYGISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRTHGYVETLFG 920

Query: 865  RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
            R+ HY +I +   SIR  NERAAINA +QGSAADI RRAM+ +  +L + KLA +MLLQ+
Sbjct: 921  RKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLAAQMLLQV 980

Query: 925  HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            HDEL+FEVPE+E+T    ++ H M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 981  HDELIFEVPEDEVTATLPVVSHVMQDAPFPAVILNVPLQVDARAADNWDEAH 1032


>gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2]
 gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2]
          Length = 1008

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/991 (45%), Positives = 656/991 (66%), Gaps = 30/991 (3%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGS +I+RA++A P L+RK DGL VNA+ GFCNMLWKL+++   ++  +H A
Sbjct: 27   KGDHVFLVDGSGYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLMRDMPPDNRPTHLA 86

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            ++FD   VTFRN+IYP+YKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 87   IVFDKSEVTFRNKIYPEYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQGGFEADDLIA 146

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ ++ I  VI+K+G+PPEK+V +
Sbjct: 147  TYVRQACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRLGIPEVIEKFGVPPEKVVEV 206

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ KRRE+++E+A  AR+
Sbjct: 207  QALAGDSVDNVPGVPGIGIKTAAQLITEYGDLETLLQRAGEIKQPKRRESLIEHAAKARI 266

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP- 301
            SR+LV+L  +V + +PL+ L + + +  +LI+FLKA+EF+ L  RVA     DAA++ P 
Sbjct: 267  SRELVLLDNNVKLDVPLDELAVHEPDSRKLIAFLKAMEFSTLTRRVAEYAQIDAADVSPD 326

Query: 302  --------VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                     V+  ++ +   +  E     D   K +  +S +   +   +  +PQ L   
Sbjct: 327  EHLKSPLATVVGQDSPQTLPLGGEP----DARAKGTSATSATSAGAAPATAHSPQALAAV 382

Query: 354  RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            R++K +   I+   Y  I    ++  W+ +   +G  +  I   ++D   +    IA++ 
Sbjct: 383  RIEKAATGKIDRGKYQTIRTLDELNAWITRAHDLGHVAIDIKATSIDPMQADICGIALAL 442

Query: 414  LDQK-------DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
               K          S   E +F       S  + G+    K     L+K  E+E  LK G
Sbjct: 443  TPNKACYIPLGHKKSGGGEDLF------ASGLAEGQIEAAKA-FDVLRKLMESEAVLKSG 495

Query: 467  HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKS 523
             +IK+  ++L ++ I++R  +D+ LMSY LD+GR +HDI S+AQKWL++      +++ S
Sbjct: 496  LDIKFISVMLAQHKITLRTTDDVQLMSYALDAGRGAHDIESLAQKWLAHAAIKHGDVIGS 555

Query: 524  RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
             ++ + +D+++  +  E+  E +++I++LWLL++ +LI E++ +VYE L++P+I V+++M
Sbjct: 556  GRNKLSLDQVTIERATEYGAETADIIIRLWLLMKARLISERMNNVYESLERPLIGVLARM 615

Query: 584  EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
            E  GI ID+ +L ++S + ++    LE+ I  ++GE  N  SPKQLGD++F K+  P G 
Sbjct: 616  ERRGIMIDRQVLSRLSGDFAQTASRLEDEIRKIAGEDINPGSPKQLGDVIFGKMGLPGGQ 675

Query: 644  KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
            KTKTG W T+A  LE +    +   + IL+WRQ+SK+KSTY D+LPN++N +TQRVHT Y
Sbjct: 676  KTKTGAWSTSASILEDLAEEGHVFPRKILDWRQVSKLKSTYTDALPNYVNPQTQRVHTTY 735

Query: 704  SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
            +LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+    KL+SADYSQIELR+LA IA 
Sbjct: 736  ALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAEKGHKLVSADYSQIELRLLAEIAD 795

Query: 764  ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
            I  L Q F + LDIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F LA QL I
Sbjct: 796  IPVLKQAFHDKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYGISAFGLANQLGI 855

Query: 824  PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            PR EA  YIK+YF RFPGI  Y++ T++F R++GYVET+FGR+ HY +I +  +S+R  N
Sbjct: 856  PREEAGAYIKKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCHYPDIKASNASLRAFN 915

Query: 884  ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
            ERAAINA +QG+AADI RRAMI +  +L + KLA +MLLQ+HDELVFEVP+ E+     +
Sbjct: 916  ERAAINARLQGTAADIIRRAMIRMEDALAEKKLAARMLLQVHDELVFEVPDSEVGDTIPV 975

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   ME A  P   L VPL V+ + ++NW E
Sbjct: 976  IQEVMENAAFPAARLSVPLHVDARAAHNWDE 1006


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/943 (48%), Positives = 632/943 (67%), Gaps = 32/943 (3%)

Query: 44  MLWKLLQNSRKESIA---SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
           MLWKLL ++R  +I    +H A+IFDY + TFR +IYP YKANR   PE L+PQ  L+R 
Sbjct: 1   MLWKLLCDARNTAIGIVPTHIAIIFDYSSNTFRKQIYPQYKANRTAPPEDLIPQFALIRQ 60

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           AT+AF +P IE +GFEADD+IATY  +A + G   TIIS+DKDLMQLV+    LYD++K+
Sbjct: 61  ATEAFNLPCIEKEGFEADDLIATYAQLATQVGAKTTIISSDKDLMQLVNTHVSLYDSMKD 120

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
           + I I  VI+KWG+ PEKM+  QALTGD  DNIPGIPGIG K AA LL ++G+L+ +L  
Sbjct: 121 KHIGISEVIEKWGVMPEKMIDFQALTGDPTDNIPGIPGIGPKIAAQLLDQFGSLDLLLQR 180

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
            + IKQ KRRENI  Y+E A++SR+LV L+ DVPI   L+H +LE  NGPRLI+FLKA+E
Sbjct: 181 VTEIKQIKRRENIQAYSEQAKISRELVKLKKDVPIDKNLDHFVLEPQNGPRLIAFLKAME 240

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
           FT L  RVA    C+AA I+ + +DI   E K I  E ++ R     T+ F   SD +  
Sbjct: 241 FTALTRRVAKETSCNAAVIDALEIDI---EWKKITCEPDL-RAKEDDTALFHDFSDNS-- 294

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
                 PQ L  +R  ++    I   +Y  I++ + +++W+ + +  G  SF   T ++D
Sbjct: 295 ------PQNLAQKRKDQVLIQKIVRGAYKTILDEETLKEWLLEAKEQGYFSFDTETTSLD 348

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLS-VHTSQDSTGKNTLTKEI-----LSYLK 454
              +K I  +++    K          +I L  V    D  G   + ++I     L+ LK
Sbjct: 349 PMQAKLIGFSLALQPGK--------AAYIPLEHVAGEDDLWGDRRIVQQIETQKALALLK 400

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL- 513
              EN+  LKIG NIKYD LV+ +Y I MR F+D ML+SY L++G S+H +  ++++WL 
Sbjct: 401 PILENQAILKIGQNIKYDWLVMKQYNIVMRSFDDTMLLSYALEAGISTHGMDILSERWLG 460

Query: 514 --SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
             S T K++  + +      +I   Q   +A E++++ L+LW +L+P+L+ +++  +YER
Sbjct: 461 HKSITYKDLTYNGRKVNSFAQIDLKQATLYAAEDADITLRLWQVLKPQLVAQRMTKIYER 520

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           LD+P+I+++++ME  GI +D+ +L ++S E+++  L+LEE IY L GEKFN++SPKQLGD
Sbjct: 521 LDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVGEKFNIASPKQLGD 580

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K+  P G+KTK GQW T+AQ LE++    + + + I+ WRQL+K+KSTY D+LP++
Sbjct: 581 ILFGKIGLPGGSKTKNGQWSTSAQTLEELAAEGHILPRKIVNWRQLTKLKSTYTDALPSY 640

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           I  +T RVHT YSLA+T TGRL+S EPNLQNIP++T  G+KIR AFI+     L+SADYS
Sbjct: 641 ILPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIASKGYLLLSADYS 700

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAH A IT L + F    DIH M AA++FGV +E +S ++RR AK INF IIYG
Sbjct: 701 QIELRVLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINFGIIYG 760

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           ISPF LA QL I R EA+ YI+ YF RFPGI +Y+EKTK F R +GYVETIFGRRIH  E
Sbjct: 761 ISPFGLANQLGISRKEASHYIQLYFERFPGIKDYMEKTKMFARHHGYVETIFGRRIHCPE 820

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           I +    +R  NERAAINAPIQGSAADI RRAMI +  +LE  KL+ KMLLQ+HDEL+FE
Sbjct: 821 IKAVNPQVRAFNERAAINAPIQGSAADIIRRAMIQMENALEKEKLSAKMLLQVHDELIFE 880

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           VP+ E T  + ++   ME A +P ++L VPL+V +  + NW E
Sbjct: 881 VPKSESTKTAILVRKVMENATMPALSLSVPLEVKVITAQNWDE 923


>gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
 gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
          Length = 1003

 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/997 (44%), Positives = 650/997 (65%), Gaps = 39/997 (3%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGS +I+RA++A P L+RK DGL +NA+ GFCNMLWKL+++   E   +H A
Sbjct: 23   KGDHVFLVDGSGYIFRAYHALPPLNRKSDGLQINAVLGFCNMLWKLMRDMPPEDRPTHLA 82

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            ++FD   VTFRN IY DYKA+RP  P+ L+PQ  L+R A  AF +P +E  GFEADD+IA
Sbjct: 83   IVFDKSEVTFRNTIYSDYKAHRPPAPDDLIPQFALIREAVHAFDLPCLEQGGFEADDLIA 142

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A   G + TI+S+DKDLMQLV+    +YDT+K+ ++ +  VI+K+G+PP+K+V +
Sbjct: 143  TYVREACARGASATIVSSDKDLMQLVTDCVTMYDTMKDRRLGVPEVIEKFGVPPDKVVEV 202

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A+ IKQ KRRE ++  AE AR+
Sbjct: 203  QALAGDSVDNVPGVPGIGVKTAAQLITEYGDLETLLSRATEIKQPKRREALIANAEKARI 262

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP- 301
            SR+LV+L   V + +PL+ L + + +  +LISFLKA+EF+ L  RVA   + DA+++ P 
Sbjct: 263  SRQLVLLDDKVKLDVPLDELAIHEPDYRKLISFLKAMEFSTLTRRVADYAEIDASSVMPD 322

Query: 302  ----VVLDINTTENKGIAIETEIDRDT----TIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                       +E     +    + DT    T+ T+  ++L+   + + S   PQ L   
Sbjct: 323  ERLKSAFAGGPSEASPQTLPLGGEPDTRARGTVSTAPVTTLA--AAPVFS---PQALAAS 377

Query: 354  RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            R + ++   ++   Y  I    ++  WV +   +G  +  I   + D   +    IA++ 
Sbjct: 378  RAKDVAAAKVDRTKYATIRTADELAAWVTRAHDLGHVAIAIKATSFDPMQADICGIALAL 437

Query: 414  LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL-----------TKEILSYLKKFFENEHF 462
                       E  +I L     + + G + L             ++L  L    E+E  
Sbjct: 438  SPN--------EAAYIPLG---HKKAGGGDDLFASGLADGQIEAAKVLETLTALLESEAV 486

Query: 463  LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
            LK G +IK+  ++L ++ I++R  +D+ LMSY LD+GRSSHDI ++A++WL +      +
Sbjct: 487  LKTGFDIKFAAVLLAQHNITLRTVDDVQLMSYALDAGRSSHDIEALAEQWLGHEMIAHAD 546

Query: 520  ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            I+ S ++ I +D++   +  E+  E+++VI++LWL+ + +LI E++ +VYE L++P+IDV
Sbjct: 547  IVGSGRNRISLDQVEIPRAAEYGAESADVIMRLWLVFKARLISERMNNVYESLERPLIDV 606

Query: 580  VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
            +++ME  GI ID+ +L ++S E +++   LE  I +++GE  N  SPKQLGD++F K+  
Sbjct: 607  LARMERRGIMIDRQVLARLSGEFAQSAARLEAEIREIAGEDINPGSPKQLGDVMFGKMGL 666

Query: 640  PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
            P G KTKTG W TTA  LE +    +   + IL+WRQ+SK+KSTY D+LP H+  +TQRV
Sbjct: 667  PGGQKTKTGAWSTTASILEDLAEAGHDFPRKILDWRQVSKLKSTYTDALPTHLLPQTQRV 726

Query: 700  HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
            HT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+    KL+SADYSQIELR+LA
Sbjct: 727  HTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAKGHKLVSADYSQIELRLLA 786

Query: 760  HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
             IA I  L Q F++ LDIH M A+E+FGV I+ +  ++RR AK INF IIYGIS F LA 
Sbjct: 787  EIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPGEVRRRAKAINFGIIYGISAFGLAN 846

Query: 820  QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            QL IPR EA  YIK+YF RFPGI  Y++ T++F R++GYV T+FGR+ HY +I +   S+
Sbjct: 847  QLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHYPDIKASNPSL 906

Query: 880  RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
            R  NERAAINA +QG+AADI RRAMI +  +L   KLA +MLLQ+HDELVFEVP+ E+  
Sbjct: 907  RAFNERAAINARLQGTAADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVPDSEVDK 966

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
               +I   ME+A  P   L VPL+V+ + ++NW E +
Sbjct: 967  TLPVIREVMEQAPFPATALSVPLRVDARAADNWDEAH 1003


>gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
 gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
          Length = 1021

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1013 (43%), Positives = 658/1013 (64%), Gaps = 49/1013 (4%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL+    +   +H A
Sbjct: 19   KGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLREMPNDERPTHLA 78

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD    TFRNE+YP YKA RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 79   IIFDKAEKTFRNELYPLYKAQRPPAPDDLIPQFALIREAVRAFDLPCLEQIGFEADDLIA 138

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    ++DT+K+ +I I  VI+K+G+PP+K+V +
Sbjct: 139  TYVRQACERGATATIVSSDKDLMQLVTDCVTMFDTMKDRRIGIPQVIEKFGVPPDKVVEV 198

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A+ IKQ KRRE ++  AE AR+
Sbjct: 199  QALAGDSVDNVPGVPGIGVKTAAQLINEYGDLDTLLARAAEIKQPKRREALIANAEKARI 258

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
            SR+LV+L   V + +PL+ L + + +  +LI+FLKA+EF+ L  RVA     D A++E  
Sbjct: 259  SRQLVLLDDKVALDVPLDELAVHEPDARKLIAFLKAMEFSTLTRRVAEYSQIDPADVEAD 318

Query: 303  VLDINTT--------ENKGIAIETEID--------------RDTTIKTSQFSSLSDQTSK 340
                + T        E +G       D                +  +T Q   L+    +
Sbjct: 319  AAVKSGTSSPSPLAGEGRGGGATDAGDLFGAPPSPTLPRKGGGSAPQTGQ--GLASSAPQ 376

Query: 341  INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG------SASFKI 394
             +   TPQ L   R ++  + P+N D Y  +    ++  W+ K+  +G       A+F I
Sbjct: 377  SSDALTPQLLAAARAEEARKIPVNRDGYATLRTRDELHGWIAKIHDLGHVALEAKATFDI 436

Query: 395  ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLT 446
             +  +D   ++   +A++            E  ++ L    S D+ G             
Sbjct: 437  KSAVVDPMQAELTGLALALGPN--------EACYVPLGHRQSGDAAGLFASGLEPDQIAA 488

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
            ++ L  L+   E+   LKIG NIK+  ++L ++GI+++  +D+ LMSY LD+GR +H + 
Sbjct: 489  RDALEALRPILESPGVLKIGFNIKFTAVLLAQHGITLQNADDVQLMSYALDAGRHAHGLD 548

Query: 507  SIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            ++A+ WL +   +  E++ S K+ +  D+++  +   +A E+++V L+LW +L+P+L+ E
Sbjct: 549  ALAETWLGHKTLSYGEVIGSGKAKLSFDQVAIDRATCYAAEDADVALRLWRVLKPRLVAE 608

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            ++  VYE L++P+I V+++ME  GI ID+ +L ++S + ++    +E  I +++GE+ N+
Sbjct: 609  RMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDFAQTAARIEAEIREIAGEEINI 668

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             SPKQLGDILF K++ P G+KTKTG W T+AQ LE++    +   + IL+WRQ+SK++ST
Sbjct: 669  GSPKQLGDILFGKMQLPGGSKTKTGAWSTSAQVLEELAEQGHEFPRKILDWRQVSKLRST 728

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
            Y D+LP +++ +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P  
Sbjct: 729  YTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAPGH 788

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            KL+SADYSQIELR+LA IA I  L Q F++ LDIH M A+E+FGV I+ +  ++RR AK 
Sbjct: 789  KLVSADYSQIELRLLAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKA 848

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            INF IIYGIS F LA QL IPR EA  YIK+YF RFPGI  Y++ T++F R +G+VET+F
Sbjct: 849  INFGIIYGISAFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCRAHGFVETLF 908

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            GR+ HY +I +  +S+R  NERAAINA +QG+AADI RRAM+ +  +L + KL+ +MLLQ
Sbjct: 909  GRKCHYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMVRMEDALAEKKLSAQMLLQ 968

Query: 924  IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +HDEL+FEV ++E+     ++   M+ A  P + L VPL+V+ + +NNW E +
Sbjct: 969  VHDELIFEVADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAANNWDEAH 1021


>gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
 gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
          Length = 1023

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/990 (44%), Positives = 648/990 (65%), Gaps = 33/990 (3%)

Query: 5    NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++   ++  +H A++
Sbjct: 45   DHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPADNRPTHLAIV 104

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD   VTFRN+IYP+YKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IATY
Sbjct: 105  FDKSEVTFRNKIYPEYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQGGFEADDLIATY 164

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               A   G   TI+S+DKDLMQLV+    +YDT+K+ +I I  VI+K+G+PPEK+V +QA
Sbjct: 165  AREASDRGATTTIVSSDKDLMQLVNDRITMYDTMKDRRIGIPEVIEKFGVPPEKVVEVQA 224

Query: 185  LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            L GDS DN+PG+PGIG KTAA L+ +YG+LE +L  A+ IKQ KRRE ++E AE AR+SR
Sbjct: 225  LAGDSTDNVPGVPGIGIKTAAQLIVDYGDLEQLLFRATEIKQPKRREALIENAEKARISR 284

Query: 245  KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            KLV+L   V + +PL+ L + + +  +LI+FLKA+EF+ L  RVA     D AN++  V 
Sbjct: 285  KLVLLDDKVELEVPLDDLAVHEPDARKLIAFLKAMEFSTLTRRVADYSQIDPANVDADV- 343

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQ--------FSSLSDQTSKINS-EQTPQKLFLERL 355
              N++E +G        R T+  TS          ++  D+  K  S +  P  L   R 
Sbjct: 344  -ANSSEARG---GDSAARTTSSATSGDLFAAPAVTATGGDKGGKSASIKGAPISLAAARE 399

Query: 356  QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + L + P++   Y  I    ++  ++ ++   G  + +I  +++D   +    +A+S   
Sbjct: 400  EALRKLPVDRGKYQAIKTLAELNAFIARIHDAGHVAIEIRANSIDPMQADLCGVALSLAP 459

Query: 416  QKDDTSFKVETIFIDLSVHTSQDSTGKNTLT--------KEILSYLKKFFENEHFLKIGH 467
                     +  ++ L+   S    G              + +  L+   E+   LKIG 
Sbjct: 460  N--------DACYVPLAHKQSGGGAGLFDGGLAPDQVKHADAIDALRPVLESSGILKIGF 511

Query: 468  NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSR 524
            ++K+  ++L ++GI++R  +D  L+SYVLD+GR SH + S+A++W  +      E+L S 
Sbjct: 512  DVKFTAVMLAQHGITLRNTDDAQLISYVLDAGRGSHGLESLAERWFGHAMLKEGELLGSG 571

Query: 525  KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
            K  I  D++   +    + E +++ L++W +L+P+L+ E +  VYE L++P++ V+++ME
Sbjct: 572  KGKITFDQVPIDKAAPLSAEGADMALRVWRVLKPRLVAEHMTTVYETLERPLVAVLARME 631

Query: 585  ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
              GI ID+ +L ++S + ++    +E  I +++GE  N+ SPKQ+GDILF K+  P G K
Sbjct: 632  RRGISIDRQVLSRLSGDFAQTAARVEAEIQEIAGEPVNVGSPKQIGDILFGKMSLPGGTK 691

Query: 645  TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            TKTG W TTAQ L+++    + + K ILEWRQ+SK+KSTY D+LP ++N +T RVHT Y+
Sbjct: 692  TKTGAWSTTAQVLDELAEQGHDLPKKILEWRQVSKLKSTYTDALPEYVNPQTHRVHTTYA 751

Query: 705  LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P  KL+SADYSQIELR+LA IA I
Sbjct: 752  LAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADI 811

Query: 765  TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
              L Q F + LDIH M A+E+FGV I+ +  ++RR AK INF IIYGIS F LA QL I 
Sbjct: 812  PVLKQAFRDGLDIHAMTASEMFGVPIKGMPSEIRRRAKAINFGIIYGISAFGLANQLGIA 871

Query: 825  RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            R EA+ YIK+YF RFPGI  Y+++T++F RQ+GYV T+FGR+ HY +I +  +S+R  NE
Sbjct: 872  REEASAYIKKYFERFPGIRAYMDETRDFCRQHGYVTTLFGRKCHYPDIKASNASVRAFNE 931

Query: 885  RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
            RAAINA +QG+AADI RRAM  V  +L + KL+ +MLLQ+HDEL+FEVP+ E+     ++
Sbjct: 932  RAAINARLQGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDAEVEATLPVV 991

Query: 945  VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             H M+ A  P + L VPL V+ + + NW E
Sbjct: 992  QHVMQDAPFPAVLLSVPLHVDARAAKNWDE 1021


>gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
 gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
          Length = 1000

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/999 (43%), Positives = 624/999 (62%), Gaps = 33/999 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56
           +Q  +H+FLVDGSSF++RA++ +    RK+    D LP  A+  FC  L + +++     
Sbjct: 8   LQPGDHVFLVDGSSFVFRAYFQSINQDRKYNFRSDRLPTGAVRLFCTKLLQFVRDGAVGI 67

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             +H A+IFD    +FR E+YPDYKANR + PE L+PQ PL+R A +AFG+  +E   +E
Sbjct: 68  KPTHLAIIFDKSEDSFRKELYPDYKANRSEPPEELIPQFPLMREAVRAFGLIPVEQARYE 127

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIE 166
           ADD+IATY   A K G  V I+S DKDLMQ+V P   +YD             E +I + 
Sbjct: 128 ADDLIATYADQAVKAGADVLIVSADKDLMQMVGPKVAMYDPASGESGGRGARPERRIGVG 187

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V++ +G+PPEK+  +QAL GDS DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ
Sbjct: 188 EVLEYFGVPPEKVTDVQALAGDSTDNVPGVPGIGIKTAAQLIGEYGDLETLLARAGEIKQ 247

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            KRRE++L  AE AR+S+ LV L  DV + +PLE L+LE  +  RLI+FLKA+EFT +  
Sbjct: 248 PKRRESLLTNAEAARISKTLVTLVRDVSVEVPLEDLVLEAPDAKRLIAFLKAMEFTTITR 307

Query: 287 RVATTYDCDAANIE--PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           RVA  Y  +AA +E  P +               E D        +  ++S     ++  
Sbjct: 308 RVAEAYGVEAAEVEADPRLAPAGLFSPAAPTSAEETDGAEPATGGEAPAVSAVAQAMDGT 367

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
            TP  L   R       P++  +Y  +++  +++ W  K +  G  +F   T+++D   +
Sbjct: 368 LTPSDLAHARASTARTIPVDRTAYRTVLDLAELKAWCAKAQDQGLLAFDTETNSLDPMQA 427

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD---STGK---NTLTKEILSYLKKFFE 458
             + ++++            E  +I L+   + D   S G+       ++ ++ LK   E
Sbjct: 428 DLVGVSLALSPN--------EACYIPLAHTGAGDGLFSEGQLPGQIPVRDAIAALKGVLE 479

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--- 515
           ++  LK+GHN+KYD+LVL R+GI +  F+  M MSY LD+G++ H +  ++   L +   
Sbjct: 480 DKGTLKVGHNVKYDQLVLARHGIDVAPFDCTMCMSYALDAGKNGHGMDELSVLHLGHQPI 539

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
              E+    K  +  DK++      +A E+++V L+LW +L+P+L  E    VYE L++P
Sbjct: 540 AFSEVTGKGKGKVTFDKVALEPATHYAAEDADVTLRLWQVLKPRLAAEGRTTVYETLERP 599

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +I V+++ME  GI ID+ +L ++S+E ++    +E+ I +L+GE+ N+ SPKQ+GDILF 
Sbjct: 600 LIAVLARMESRGISIDKAMLARLSSEFAQGAARIEDEIAELAGERLNVGSPKQMGDILFG 659

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P G KT TG W T A  LE++    + + + ILEWRQLSK++STY D+LPN +N +
Sbjct: 660 KMGLPGGTKTATGMWSTKATALEELAEAGHKLPQKILEWRQLSKLRSTYTDALPNFVNPQ 719

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T+RVHT Y+LA+T TGRL+S +PNLQNIPI+T+ G++IRRAF++     L+SADYSQIEL
Sbjct: 720 TRRVHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAEEGNLLVSADYSQIEL 779

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LA IA+I  L   F   LDIH M A+E+F V ++ +  ++RR AK INF IIYGIS F
Sbjct: 780 RLLAEIAEIPALRTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINFGIIYGISAF 839

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA QL IPR EA  YIKRYF RFPGI +Y+E+TK F R++GYVET+FGRR HY EI + 
Sbjct: 840 GLANQLGIPREEAGQYIKRYFERFPGIRDYMEETKTFCREHGYVETLFGRRCHYPEIAAK 899

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             SIR  NERAAINA +QG+AADI RRAMI +  +LE  KL+ +MLLQ+HDELVFEVPE 
Sbjct: 900 NPSIRAFNERAAINARLQGTAADIIRRAMIRMEPALEKAKLSARMLLQVHDELVFEVPEG 959

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E      ++   ME A  P + L VPLKV+ + + NW+E
Sbjct: 960 EADATIPVVRQCMETASAPAVALAVPLKVDARAAKNWEE 998


>gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
 gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
          Length = 1025

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1002 (43%), Positives = 647/1002 (64%), Gaps = 38/1002 (3%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++   E+  +H A
Sbjct: 30   KGDHIFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLA 89

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD   VTFRN +YP+YKA+RP  PE L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 90   IIFDKSEVTFRNHLYPEYKAHRPPAPEDLIPQFALIREAVRAFDLPCLEQSGFEADDLIA 149

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ +I +  VI+K+G+PP K+V +
Sbjct: 150  TYVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFGVPPNKVVEV 209

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ KRRE ++E AE AR+
Sbjct: 210  QALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKARI 269

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300
            SRKLV+L   V + +PLE L + + +  +L++FLKA+EFT L  RVA     D +++E  
Sbjct: 270  SRKLVLLDDHVQLEVPLEELAVHEPDARKLVAFLKAMEFTTLTRRVADYAQIDPSDVEAE 329

Query: 301  -------PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-------- 345
                   P +           A +    + +       +  S Q   +N+ +        
Sbjct: 330  TALKSAVPPLAKSAPPSGDLFAGQEPSPQPSPAGGGGSAPASGQGGPLNAGRGRDGRPGV 389

Query: 346  --TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
              +P+ L   R +   + P++  +Y  + +  ++Q ++ ++   G  + +    ++D   
Sbjct: 390  VLSPETLVAARAEAARKIPVDRTAYKTLHSLDELQGFIARIHDTGIVALEAAATSIDPMQ 449

Query: 404  SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKK 455
            ++ I +A++ L   D         +I L    S D  G             ++ L  LK 
Sbjct: 450  AELIGLALA-LGPND-------ACYIPLPHKQSGDGDGLFAAGLAPDQIGPRDALDALKP 501

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+    K+G  IK+  ++L ++G+++R  +D  LMSY LD+GR SH + ++++  L +
Sbjct: 502  ILESAGVAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHALDALSESNLGH 561

Query: 516  TRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            T     E+  + K+ I  D++   +   +A E ++V L+L  +L+P+L+   +  VYE L
Sbjct: 562  TLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLRLARVLKPRLVAGSMTAVYETL 621

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P++ V+++ME  GI ID+ +L ++SA+ ++    +E  I +L+GE  N+ SPKQLGDI
Sbjct: 622  ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDI 681

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF K+  P G+KTKTG W T+AQ L+++    +   + IL+WRQ+SK++STY D+LPN++
Sbjct: 682  LFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNYV 741

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            + +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P  KL+SADYSQ
Sbjct: 742  HPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQ 801

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+L+ +A +  L + F++ +DIH M A+E+FGV +E +  ++RR AK INF IIYGI
Sbjct: 802  IELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGI 861

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL IPR EA  YIKRYF RFPGI  Y+++T++F R +GYV T+FGR+ HY +I
Sbjct: 862  SAFGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRDFCRTHGYVTTLFGRKCHYPDI 921

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             +   SIR  NERAAINA +QGSAADI RRAM+ +  +L + KL+ +MLLQ+HDEL+FEV
Sbjct: 922  KASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEV 981

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            PE E+     ++   M+ A  P + L VPL+V+ + ++NW E
Sbjct: 982  PEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNWDE 1023


>gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
 gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
          Length = 1020

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/987 (44%), Positives = 643/987 (65%), Gaps = 23/987 (2%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++  +    +H A
Sbjct: 40   KSDHVFLVDGSSYIFRAYHALPPLNRKSDGLNVNAVLGFCNMLWKLLRDMPETDRPTHLA 99

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            ++FD   VTFRN+IY DYKA+RP  P+ L+PQ  L+R A  AF +P +E  G+EADD+IA
Sbjct: 100  IVFDKSEVTFRNKIYADYKAHRPPAPDDLIPQFALIREAVHAFDLPCLEQAGYEADDLIA 159

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY  +A + G   TI+S+DKDLMQLV+    +YDT+K+ +I    VI+K+G+PPEK+V +
Sbjct: 160  TYARLACERGATTTIVSSDKDLMQLVNDCVTMYDTMKDRRIGTAEVIEKFGVPPEKVVEV 219

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS DN+PG+PGIG KTAA L+ +YG+LE +L  A+ IKQ KRRE ++E AE AR+
Sbjct: 220  QALAGDSTDNVPGVPGIGIKTAAQLINDYGDLEGLLTRAAEIKQPKRREALIENAEKARI 279

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI--- 299
            SR+LV+L   V + +PL+ L + + +  +LI+FLKA+EFT L  RVA     D A++   
Sbjct: 280  SRQLVLLDDHVALEVPLDDLAVHEPDPRKLIAFLKAMEFTTLTRRVAEYSQIDPADVAAN 339

Query: 300  EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK-INSEQTPQKLFLERLQKL 358
            + +     T      A     +       +   +   +T K   S+ TP  L   R +  
Sbjct: 340  QQLKSGGGTAVPAPAAASAGTNAAGKPAAAAPKTGDPRTDKSAMSKGTPVSLAEARAEAA 399

Query: 359  SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                I+ + Y  I +  ++  W+ ++  +G  + +   +++D   +    IA++      
Sbjct: 400  KSARIDREKYQTIRSLPELNAWIARIHDLGRVTIEAKANSIDPMQASLCGIALALAPN-- 457

Query: 419  DTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                  +  +I L+   + D  G             ++ L+ LK   E+   LKIG NIK
Sbjct: 458  ------DACYIPLAHRQAGDGGGLFDAGLAPDQVKDRDALAALKPVLESAGILKIGFNIK 511

Query: 471  YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527
            +  ++L ++GI++   +DI LMSY LD+GR S    S+A+  L++      E++ S K+ 
Sbjct: 512  FVAVLLAQHGITLANVDDIQLMSYALDAGRGSQKFESLAEHVLAHAVLGEGELVGSGKNK 571

Query: 528  IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            +  ++++  +   HA E ++VI +LW +L+P+L+ E++  VYE L++P++ V++QME  G
Sbjct: 572  LTFEQVAIDRATAHAAEAADVIHRLWRVLKPRLVAERMTAVYETLERPLVTVLAQMERRG 631

Query: 588  IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            I ID+ +L ++S + ++    +E  + +L+GE  N+ SPKQ+GDILF K+  P G KTKT
Sbjct: 632  IAIDRQVLSRLSGDFAQTAGRVEAELQELAGEPINVGSPKQIGDILFGKMGLPGGTKTKT 691

Query: 648  GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
            G W T+A  L+ +    N   + ILEWRQ+SK+KSTY D+LP ++N ++QRVHT Y+LA+
Sbjct: 692  GAWSTSASILDDLAEQGNDFARKILEWRQVSKLKSTYTDALPTYVNPQSQRVHTTYALAA 751

Query: 708  TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P  KL+SADYSQIELR+LA IA I  L
Sbjct: 752  TTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVL 811

Query: 768  YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
             Q F++ LDIH M A+E+FGV I+ +  ++RR AK INF IIYGIS F LA QL I R E
Sbjct: 812  KQAFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLANQLGIAREE 871

Query: 828  AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            A+ YIKRYF RFPGI  Y+++T+ F R++GYV T+FGR+ HY EI +  +S+R  NERAA
Sbjct: 872  ASAYIKRYFERFPGIRAYMDETREFCRKHGYVTTLFGRKCHYPEIKASNASVRAFNERAA 931

Query: 888  INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
            INA +QG+AADI RRAM  V  +L + KL+ +MLLQ+HDEL+FEVP++E+     ++ H 
Sbjct: 932  INARLQGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDDEVAATLPVVQHV 991

Query: 948  MEKACLPKINLRVPLKVNIKVSNNWQE 974
            M+ A  P + L VPL V+ + ++NW E
Sbjct: 992  MQDAPFPAVLLSVPLHVDARAADNWDE 1018


>gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278]
 gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278]
          Length = 1034

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/986 (43%), Positives = 645/986 (65%), Gaps = 24/986 (2%)

Query: 5    NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++  +    +H A++
Sbjct: 55   DHVFLVDGSSYIFRAYHALPPLNRKSDGLNVNAVLGFCNMLWKLLRDMPETDRPTHLAIV 114

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD   VTFRN+IY DYKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IATY
Sbjct: 115  FDKSEVTFRNQIYADYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIATY 174

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              +A + G   TI+S+DKDLMQLV+    +YDT+K+ +I    VI+K+G+PPEK+V +QA
Sbjct: 175  ARLACERGATTTIVSSDKDLMQLVNDCVTMYDTMKDRRIGTAEVIEKFGVPPEKVVEVQA 234

Query: 185  LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            L GDS DN+PG+PGIG KTAA L+ +YG+LE++L  A+ IKQ KRRE ++E AE AR+SR
Sbjct: 235  LAGDSTDNVPGVPGIGIKTAAQLINDYGDLESLLTRAAEIKQPKRREALIENAEKARISR 294

Query: 245  KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP-VV 303
            +LV+L   V + +PL+ L + + +  +LI+FLKA+EF+ L  RVA     D A++     
Sbjct: 295  QLVLLDDKVALEVPLDDLAVHEPDPRKLIAFLKAMEFSTLTRRVAEYSQIDPADVTADAQ 354

Query: 304  LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN----SEQTPQKLFLERLQKLS 359
            L + ++        +      +  +   ++      +I+     + TP  L   R +   
Sbjct: 355  LKVGSSPAAAPTPSSPASGGGSAPSKPATAPRTGDPRIDKSAMGKGTPAGLAESRAEAAK 414

Query: 360  QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               I+ D Y  + +  +++ ++ +    G  +  +   ++D   +    ++++       
Sbjct: 415  SARIDRDKYQTLRSLPELKAFLARAHEFGRVTVDVKASSIDPMQANLCGLSLALAPG--- 471

Query: 420  TSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                 E  +I L+   + D  G              E L+ LK   E+   LKIG+NIK+
Sbjct: 472  -----EACYIPLAHRQAGDGGGLFDAGLAPDQIKESEALAALKPVLESTGLLKIGYNIKF 526

Query: 472  DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
              ++L ++GI+++  +DI+LMSY LD+GR SH + S+A+  L++   +  E++ S K+ +
Sbjct: 527  LAVLLAQHGITLQNVDDILLMSYALDAGRGSHKLDSLAEHVLAHAIISEGELIGSGKNKL 586

Query: 529  PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              ++++  +   HA E ++VI ++W +L+P+L  E++  VYE L++P++ V+++ME  GI
Sbjct: 587  TFEQVAIDRATAHAAEAADVIHRVWRVLKPRLTAERMTAVYETLERPLVSVLARMERRGI 646

Query: 589  QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
             ID+ +L ++S + ++    +E  + +L+GE  N+ SPKQ+GDILF K+    G +TKTG
Sbjct: 647  SIDRQVLSRLSGDFAQTAARVEAELQELAGEPINVGSPKQIGDILFGKMGLSGGTRTKTG 706

Query: 649  QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
             W T+A  L+ +    N   + ILEWRQ+SK+KSTY D+LP ++N +T RVHT Y+LA+T
Sbjct: 707  AWSTSASILDDLAEQGNDFARKILEWRQVSKLKSTYTDALPTYVNPQTHRVHTTYALAAT 766

Query: 709  MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
             TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P  KL+SADYSQIELR+LA IA I  L 
Sbjct: 767  TTGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLK 826

Query: 769  QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            Q F++ LDIH M A+E+FGV I+ +  ++RR AK INF IIYGIS F LA QL I R EA
Sbjct: 827  QAFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLANQLGIAREEA 886

Query: 829  ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + YIKRYF RFPGI  Y+++T+ F R+NGYV T+FGR+ HY EI +  +S+R  NERAAI
Sbjct: 887  SAYIKRYFERFPGIRAYMDETREFCRKNGYVVTLFGRKCHYPEIKASNASVRAFNERAAI 946

Query: 889  NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
            NA +QG+AADI RRAM  V ++L   KL+ +MLLQ+HDEL+FEVPE+E+     ++ H M
Sbjct: 947  NARLQGTAADIIRRAMTRVEEALAQKKLSAQMLLQVHDELIFEVPEDEVAATLPVVQHVM 1006

Query: 949  EKACLPKINLRVPLKVNIKVSNNWQE 974
            + A  P + L VPL V+ + ++NW E
Sbjct: 1007 QDAPFPAVLLSVPLHVDARAADNWDE 1032


>gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
 gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
          Length = 1012

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1011 (42%), Positives = 648/1011 (64%), Gaps = 59/1011 (5%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL+    ++  +H A
Sbjct: 20   KGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLREMPPDNRPTHLA 79

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD    TFRNE+YP YKA RP  PE L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 80   IIFDKSEKTFRNEMYPAYKAQRPPAPEDLIPQFALIREAVRAFDLPCLEQIGFEADDLIA 139

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ +I I  VI+K+G+PP K+V +
Sbjct: 140  TYVREACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGIAEVIEKFGVPPNKVVEV 199

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A+ IKQ KRRE ++E A+ AR+
Sbjct: 200  QALAGDSVDNVPGVPGIGVKTAAQLINEYGDLDTLLSRAAEIKQPKRREALIENADKARI 259

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA------------- 289
            SR+LV+L   V + +PL+ L + + +  +LI+FLKA+EF+ L  RVA             
Sbjct: 260  SRRLVLLDDHVKLDVPLDELAVHEPDARKLIAFLKAMEFSTLTRRVAEYSQIDPADVAAD 319

Query: 290  -------------TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
                         T      A ++P +   +             D  +     +     D
Sbjct: 320  AATKSAAAIAPAPTGDQFVMAGLDPAIHPASQ------------DASSKATNPRVKPAGD 367

Query: 337  --QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
              +  +  ++ TP  L   R ++     ++ D Y  + +  ++ +W+ ++   G  +F+ 
Sbjct: 368  GGKRGEAANDFTPISLAAARAEQARNTKVDRDGYQTVRSLDELNRWIARIHDAGQVAFEA 427

Query: 395  ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLT 446
               ++D   ++   +A++            E  +I L    S D  G            T
Sbjct: 428  KATSIDPMQAELCGLALALTPN--------EACYIPLGHKQSGDGDGLFAAGLAPDQIGT 479

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
            ++ L  L+   E+   LKIG NIK+  ++L ++G++++  +D+ LMSY LD+GR +H + 
Sbjct: 480  RDALEALRPLLESPGVLKIGFNIKFTAVLLAQHGLTLQNHDDVQLMSYALDAGRHAHGLD 539

Query: 507  SIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            ++A+ WL +   +  E++ S K+ +  D+++  +   +A E+++V L+LW +L+P+L  E
Sbjct: 540  ALAENWLGHKALSYGEVIGSGKAKLGFDQVAIDRATCYAAEDADVALRLWRILKPRLTAE 599

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +++ VYE L++P+I V+++ME  GI ID+ +L ++S++ ++    +E  I +++GE+ N+
Sbjct: 600  RMMTVYETLERPLIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIREIAGEELNI 659

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             SPKQLGD+LF K+  P G KTKTG W T+A  L+++    +   + IL+WRQ+SK++ST
Sbjct: 660  GSPKQLGDVLFGKMGLPGGKKTKTGAWSTSASILDELAEEGHQFPRKILDWRQVSKLRST 719

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
            Y D+LP +++ +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P  
Sbjct: 720  YTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAPGH 779

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            KL+SADYSQIELR+L+ +A++  L   F++ +DIH M A+E+FGV ++ +  ++RR AK 
Sbjct: 780  KLVSADYSQIELRLLSEVAEVPALRTAFQDGIDIHAMTASEMFGVPVKDMPGEVRRRAKA 839

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            INF IIYGIS F LA QL IPR EA  YIK+YF RFPGI +Y++ TK F R +GYVET+F
Sbjct: 840  INFGIIYGISAFGLANQLGIPREEAGAYIKKYFERFPGIRDYMDATKEFCRAHGYVETLF 899

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            GR+ HY +I +   SIR  NERAAINA +QG+AADI RRAM+ +  +L   +L+ +MLLQ
Sbjct: 900  GRKCHYPDIKASNPSIRAFNERAAINARLQGTAADIIRRAMVRMEDALAAKQLSAQMLLQ 959

Query: 924  IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +HDEL+FEVP++E+     ++   M+ A  P + L VPL+V+ + ++NW E
Sbjct: 960  VHDELIFEVPDDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAADNWDE 1010


>gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
 gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
          Length = 1025

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1002 (43%), Positives = 647/1002 (64%), Gaps = 38/1002 (3%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++   E+  +H A
Sbjct: 30   KGDHIFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLA 89

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD   VTFRN +YP+YKA+RP  PE L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 90   IIFDKSEVTFRNHLYPEYKAHRPPAPEDLIPQFALIREAVRAFDLPCLEQSGFEADDLIA 149

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ +I +  VI+K+G+PP K+V +
Sbjct: 150  TYVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFGVPPNKVVEV 209

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ KRRE ++E AE AR+
Sbjct: 210  QALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKARI 269

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300
            SRKLV+L   V + +PLE L + + +  +L++FLKA+EFT L  RVA     D +++E  
Sbjct: 270  SRKLVLLDDHVQLEVPLEELAVHEPDARKLVAFLKAMEFTTLTRRVADYAQIDPSDVEAE 329

Query: 301  -------PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-------- 345
                   P +           A +    + +       +  S Q   +N+ +        
Sbjct: 330  TALKSAVPPLAKSAAASGDLFAGQEPSPQPSPASGGGSALASGQGGPLNAGRGRDGRPGV 389

Query: 346  --TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
              +P+ L   R +   + P++  +Y  + +  ++  ++ ++   G  + + +  ++D   
Sbjct: 390  VLSPEALVAARAEAARKIPVDRTAYKTLRSLDELHGFIARIHDTGIVALETVATSIDPMQ 449

Query: 404  SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKK 455
            ++ I +A++ L   D         +I L    S D  G             ++ L  LK 
Sbjct: 450  AELIGLALA-LGPND-------ACYIPLLHKQSGDGDGLFAAGLAPDQIGPRDALDALKP 501

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+    K+G  IK+  ++L ++G+++R  +D  LMSY LD+GR SH + ++++  L +
Sbjct: 502  ILESAGVAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHALDALSESNLGH 561

Query: 516  TRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            T     E+  + K+ I  D++   +   +A E ++V L+L  +L+P+L+   +  VYE L
Sbjct: 562  TLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLRLARVLKPRLVAGSMTAVYETL 621

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P++ V+++ME  GI ID+ +L ++SA+ ++    +E  I +L+GE  N+ SPKQLGDI
Sbjct: 622  ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDI 681

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF K+  P G+KTKTG W T+AQ L+++    +   + IL+WRQ+SK++STY D+LPN++
Sbjct: 682  LFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNYV 741

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            + +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P  KL+SADYSQ
Sbjct: 742  HPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQ 801

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+L+ +A +  L + F++ +DIH M A+E+FGV +E +  ++RR AK INF IIYGI
Sbjct: 802  IELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGI 861

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL IPR EA  YIKRYF RFPGI  Y+++T++F R +GYV T+FGR+ HY +I
Sbjct: 862  SAFGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRDFCRNHGYVTTLFGRKCHYPDI 921

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             +   SIR  NERAAINA +QGSAADI RRAM+ +  +L + KL+ +MLLQ+HDEL+FEV
Sbjct: 922  KASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEV 981

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            PE E+     ++   M+ A  P + L VPL+V+ + ++NW E
Sbjct: 982  PEAEVEATLPVVRAVMQDAPFPAVILNVPLQVDARAADNWDE 1023


>gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
 gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
          Length = 1027

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1004 (43%), Positives = 647/1004 (64%), Gaps = 40/1004 (3%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++   E+  +H A
Sbjct: 30   KGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLA 89

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD   VTFRN +YP+YKA+RP  PE L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 90   IIFDKSEVTFRNALYPEYKAHRPPAPEDLIPQFGLIREAVRAFDLPCLEQSGFEADDLIA 149

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ +I +  VI+K+G+PP K+V +
Sbjct: 150  TYVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFGVPPNKVVEV 209

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ KRRE ++E AE AR+
Sbjct: 210  QALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKARI 269

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300
            SRKLV+L   V + +PL  L + + +  +L++FLKA+EFT L  RVA     D +++E  
Sbjct: 270  SRKLVLLDDHVKLEVPLAELAVHEPDARKLVAFLKAMEFTTLTRRVAEYAQIDPSDVEAE 329

Query: 301  -------PVVLDINTTENKG--IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ------ 345
                   P +    +T   G   A +    + +       +  S     +N+ +      
Sbjct: 330  TALKSAVPPLARSGSTSASGDLFAGQEPSPQPSPASGRGGAPDSGPGGPLNAGRGRDGKP 389

Query: 346  ----TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
                +P+ L   R +   + P++  +Y  +    ++   + ++   G  + + +  ++D 
Sbjct: 390  GVVLSPEALVAARAEAARKVPVDRTAYKTLRTLDELHAVIARIHDSGVVALEAVATSIDP 449

Query: 402  FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYL 453
              ++   +A++ L   D         +I L    + D  G            T++ L  L
Sbjct: 450  MQAELTGVALA-LGPND-------ACYIPLGHKQAGDGDGLFAAGLAPDQLGTRDALDAL 501

Query: 454  KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            K   E+    K+G  IK+  ++L ++G+++R  +D  LMSY LD+GR SH + ++++  L
Sbjct: 502  KPVLESAGIAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHGLDALSESNL 561

Query: 514  SYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
             +T     E+  + K+ I +D++   +   +A E ++V L+L  +L+P+L+   +  VYE
Sbjct: 562  GHTLHTLTELTGTGKNKIGLDQVGIDRATAYAAERADVSLRLARVLKPRLVAGSMTAVYE 621

Query: 571  RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
             L++P++ V+++ME  GI ID+ +L ++S++ ++    +E  I +L+GE  N+ SPKQLG
Sbjct: 622  TLERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIEAEIRELAGEDINIGSPKQLG 681

Query: 631  DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            DILF K+  P G+KTKTG W T+AQ L+++    +   K ILEWRQ+SK++STY D+LPN
Sbjct: 682  DILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPKKILEWRQVSKLRSTYTDALPN 741

Query: 691  HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            +++ +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P  KL+SADY
Sbjct: 742  YVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHKLVSADY 801

Query: 751  SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            SQIELR+L+ +A +  L + F++ +DIH M A+E+FGV +E +  ++RR AK INF IIY
Sbjct: 802  SQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIY 861

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            GIS F LA QL IPR EA  YIKRYF RFPGI  Y+++T++F R +GYV T+FGR+ HY 
Sbjct: 862  GISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRAHGYVTTLFGRKCHYP 921

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            +I +   SIR  NERAAINA +QGSAADI RRAM+ +  +L + KL+ +MLLQ+HDEL+F
Sbjct: 922  DIKASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIF 981

Query: 931  EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EVPE E+     ++   M+ A  P + L VPL+V+ + ++NW E
Sbjct: 982  EVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNWDE 1025


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score =  846 bits (2186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/992 (42%), Positives = 623/992 (62%), Gaps = 52/992 (5%)

Query: 5    NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            + ++L+DGS +I+RAF+A P L+R  DGLPV A+ GFCNMLWKLL+ ++  +  +H AVI
Sbjct: 50   SRVYLIDGSGYIFRAFHALPPLTRPSDGLPVGAVHGFCNMLWKLLRETKGANAPTHLAVI 109

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD+  VTFR+ I   YKA RP+ P  L+PQ  L+R A +AF +  IE +GFEADDIIA Y
Sbjct: 110  FDHSRVTFRSAISATYKAQRPEPPAELVPQFALIRDAVRAFNVACIEQEGFEADDIIAAY 169

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            T  A   G  V I+S+DKDLMQLV P   + DT+K + I    VI+K+G+PP K+V +Q+
Sbjct: 170  TCQAADAGADVVIVSSDKDLMQLVRPGVTMLDTMKNKVIGEAEVIEKFGVPPSKVVDVQS 229

Query: 185  LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            L GDS+DN+PG+PGIG KTAA L++EYG+LEN+L NA+ IKQK RRE ++E+A+ ARLSR
Sbjct: 230  LAGDSVDNVPGVPGIGIKTAAELIREYGDLENLLANAALIKQKMRRERLIEFADQARLSR 289

Query: 245  KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            +LV L  D+P+  PL+   +E+ +   L+ FL+ +EF  L  R++  +      +EP   
Sbjct: 290  RLVELSCDMPVEKPLDLTAVEEPDPHALLEFLRTMEFNSLTKRISEAF-----GVEP--- 341

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              +T E    +    ++ +   K+S   + +D+  ++ +              L   P +
Sbjct: 342  --STGEMTRPSPVDGVEAEAPEKSSGGDTPADEVRRVEA-------------WLKAIPFD 386

Query: 365  NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
               Y ++ + + ++ W+      G  +F   T  +DA  +K   +A++    +       
Sbjct: 387  RSLYVQVTDLQALEDWIAAATEQGFVAFDTETTALDAMSAKLCGVALALEPGR------- 439

Query: 425  ETIFIDLSVHTSQDS---TGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
               +I L+ H + D    TG   + +      L  LK   E++  LKIG NIKYD L++ 
Sbjct: 440  -ACYIPLA-HRAGDGLDFTGAGEIAQLPMESALPRLKALLEDDSVLKIGQNIKYDALIMR 497

Query: 478  RYG-ISMRGFEDIMLMSYVLDSGR---SSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
            R+G I +  ++D MLM+Y  D GR   +   +  ++++ L +T     ++    K+    
Sbjct: 498  RHGDIRVAPYDDTMLMAYACDQGRGGLAGFGMDELSKRHLGHTPIAFTDVAGKGKAQSTF 557

Query: 531  DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            D I+  +  E+A E+++V L+LW L R ++  E +  VY  L++PM  V+ QME  GI++
Sbjct: 558  DCIAVDKATEYAAEDADVTLRLWHLFRARIAAEGMAAVYATLERPMPAVLGQMEFNGIEV 617

Query: 591  DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            D+ +L ++S + +++L  LE+ IY+L+G++FN+ SP+Q+ D+LF K   P   KT TG+W
Sbjct: 618  DRTVLSRLSGDFAQSLARLEDEIYELAGQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKW 677

Query: 651  KTTAQDLEQINCGDN------PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
             T A+ LE +   ++       +   +LEWRQL+K+KSTY DSLP HI+  T R+HT YS
Sbjct: 678  STGAKVLEDLVSSEDLTEDQRRLPAKLLEWRQLAKLKSTYTDSLPQHIDADTGRIHTCYS 737

Query: 705  LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            LAST TGRL+S EPNLQNIPI+T  G+ IR AFI+ P KKLISADYSQIELR+LAH+A I
Sbjct: 738  LASTSTGRLSSTEPNLQNIPIRTREGRMIRSAFIAAPGKKLISADYSQIELRVLAHMADI 797

Query: 765  TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
              L   F   LDIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F L+ QL IP
Sbjct: 798  PALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIYGISAFGLSQQLGIP 857

Query: 825  RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            R EA DYI +YF RFPGI  Y++  ++ V ++G+VET+FGR+IH+ EI +PK ++R   E
Sbjct: 858  RQEAGDYIAKYFERFPGIRAYMDAMRSKVHEDGHVETLFGRKIHFPEIKTPKWNMRQFFE 917

Query: 885  RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
            RAAINAPIQG+AADI RRAM+ V  +LE   +  +MLLQ+HDELVFE  + E+    + +
Sbjct: 918  RAAINAPIQGTAADIIRRAMVRVPAALEQAGVRARMLLQVHDELVFEADDSEVEATIKAV 977

Query: 945  VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
               ME+A  P +   VPLKV+ + + NW E +
Sbjct: 978  TRVMERAAEPAVAFSVPLKVDARAAQNWDEAH 1009


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1004 (44%), Positives = 629/1004 (62%), Gaps = 68/1004 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +H++L+DGS +I+RAF+A P L+R  DGLPV A+ GFC MLWKLL+ ++     +H  
Sbjct: 26  KGSHVYLIDGSGYIFRAFHALPPLTRPSDGLPVGAVHGFCQMLWKLLRETKASEAPTHMG 85

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD    TFRN+IYP YKA RP  PE L+PQ PL+R A +AF +  +E+ G+EADD+IA
Sbjct: 86  VIFDAGRETFRNQIYPQYKAQRPPPPEELIPQFPLIRDAVRAFNVACVELDGYEADDLIA 145

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY+  A   G  VT++S+DKDLMQLV P   ++D +K ++I  + VI+K+G+PPEK+V +
Sbjct: 146 TYSRRAVDVGGDVTVVSSDKDLMQLVRPGVTMFDGMKSKRIGRDEVIEKFGVPPEKVVDV 205

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GDS+DN+PG+PGIG KTAA L+  YG+L+ +L  A  IKQ KRRE ++E+AE AR+
Sbjct: 206 QSLAGDSVDNVPGVPGIGIKTAAELIAAYGDLDTLLARAGEIKQPKRREKLIEFAEQARI 265

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV+L+ DV +   ++ L + D     L+ FL+ +EF  L  R+A     +A    P+
Sbjct: 266 SRSLVLLKDDVVLETAIDALGVRDPQVDALLGFLRMMEFNTLTKRIAEGLGAEAP--PPL 323

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTS-QFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            + +  +                ++ S Q  +L    +    + +P              
Sbjct: 324 AVSVGAS----------------VRVSPQQVNLDVIEAGAPQDASPAAAVAAGAAIARAQ 367

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+   Y  +     +++WV++    G  +F   T  + A  ++ + I+++         
Sbjct: 368 AIDRSKYETVTTRARLEEWVRRAREAGRVAFDTETTDLSALDAELVGISLAVAPG----- 422

Query: 422 FKVETIFIDLSVHTS--------QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              E  +I L  HT          D+  +     E L+ +    E+   LKIG NIKYD 
Sbjct: 423 ---EACYIPLG-HTGPSGDLFGGDDNRPQQLAANEALALIGPLLEDPSVLKIGQNIKYDA 478

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-------KS 523
           LV+ R GI +  F+D ML+SY LD GR  H + ++A++ L +   T  + +       KS
Sbjct: 479 LVMKRRGIEIVSFDDTMLLSYALDGGRGQHGMDALAERHLGHMCMTFAQAMGHAPGAKKS 538

Query: 524 RK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            K  +++P+DK +     E+A E+++V ++LW+ L+P+L  E++  VYE L++P++ V+ 
Sbjct: 539 DKTFAAMPLDKAT-----EYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIV 593

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI++D+D+L ++S   ++  + LEE I  L G KFNL SPKQLG++LF +LK P 
Sbjct: 594 GMEHAGIKVDRDILSRLSHAFAQRTVRLEEEINGLVGHKFNLGSPKQLGELLFDRLKLPG 653

Query: 642 GAKTKTGQWKTTAQDL------EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           G KTK+GQW+T A  L      E+I+     +I  +LEWRQ++K+KSTY D+LP +IN  
Sbjct: 654 GKKTKSGQWETRANLLDDLAANEEIDGDARRLINTMLEWRQMTKLKSTYTDALPAYINAE 713

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T R+HT Y+L +T TGRLAS +PNLQNIPI+T  G++IR AFI+    +LISADYSQIEL
Sbjct: 714 TGRIHTSYALGATTTGRLASSDPNLQNIPIRTKEGREIRTAFIADKGMQLISADYSQIEL 773

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LAH+A I  L + F   LDIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F
Sbjct: 774 RVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFGIIYGISAF 833

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA QL I R EA+DYIK YF RFPGI +Y++ TK  V  +G+VETIFGRRIHY EIN+ 
Sbjct: 834 GLANQLSISREEASDYIKTYFQRFPGIRDYMDATKKQVHAHGHVETIFGRRIHYPEINTK 893

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPE 934
             S+R   ERAAINAPIQGSAADI RRAMI +  +L D KL++ +MLLQ+HDELVFEV +
Sbjct: 894 NPSMRGFLERAAINAPIQGSAADIIRRAMIRMPAALVDAKLSSARMLLQVHDELVFEVAD 953

Query: 935 EE----ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E    ITTA ++    ME A  P + L VP+ V+ K +NNW E
Sbjct: 954 NEASALITTARRV----METAAEPALKLAVPIHVDAKAANNWDE 993


>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
 gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
          Length = 1020

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1004 (42%), Positives = 633/1004 (63%), Gaps = 37/1004 (3%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56
            +Q  +H+FLVDGSSF++RA++ +    RK+    D LP  A+  FC  L++ +++     
Sbjct: 26   IQPGDHVFLVDGSSFVFRAYFQSINQDRKYNYRSDRLPTGAVRLFCTKLFQFVRDGALGI 85

Query: 57   IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              +H A+IFD    +FR E+YP YKANR   P+ L+PQ PL+R A +AFG+  +E   +E
Sbjct: 86   RPTHLAIIFDKSEDSFRKELYPLYKANRSDPPDDLIPQFPLMREAVKAFGLIPVEQARYE 145

Query: 117  ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIE 166
            ADD+IATY   A+  G  V I+S DKDLMQL+     +YD             E +I + 
Sbjct: 146  ADDLIATYARQAQAAGADVLIVSADKDLMQLIGERVAMYDPASGESGGRGSRPERRIGVP 205

Query: 167  HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
             V++ +G+ PE++V +QAL GDS DN+PG+PGIG KTAA L+++YG+L+ +L  AS IKQ
Sbjct: 206  EVVEYFGVGPEQVVDVQALAGDSTDNVPGVPGIGIKTAATLIKDYGDLDTLLARASEIKQ 265

Query: 227  KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            +KRR++++E+A+ AR+S++LV L TDVP+ +PL  L+LE  +G +L+SFLKA+EFT ++ 
Sbjct: 266  EKRRQSLIEHADKARISKELVKLVTDVPLEVPLADLVLEQPDGKQLVSFLKAMEFTTIVR 325

Query: 287  RVATTYDCDAANIEP-VVLDINTT----ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
            R A  +  +AA I+P   L ++ +      +   + T  + DT        +++   ++ 
Sbjct: 326  RAAEAFGVEAAEIDPDPRLAVSGSGPLFAGQSAPVSTPPEADTDTAPPAPPAVALTGARP 385

Query: 342  NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
            N  + P  L   R Q+     ++   Y  + +  +++ W  K    G  +F   T ++D 
Sbjct: 386  NVLE-PADLAATRAQEARATKVDRSHYRMLTSLDELKAWCAKARDQGFVAFDTETTSLDP 444

Query: 402  FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT------KEILSYLKK 455
              +  + ++++            E  +I L+   + D      L        + L+ LK 
Sbjct: 445  MQADLVGVSLALAPN--------EACYIPLAHVGAGDGLFTEGLLPGQIPFNDALAALKG 496

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+   LKIGHN+KYD  VL R+GI++  ++  M MSY LD+GR  H +  ++ K+L +
Sbjct: 497  MLEDGGTLKIGHNVKYDAAVLARHGITVAPYDCTMCMSYALDAGRGGHGMDELSIKYLGH 556

Query: 516  TR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            T     E+    KS I  D++       +A E+++V L+LW +L+P+L  E +  VYE L
Sbjct: 557  TPIAFTEVAGKGKSQITFDRVPLEAATAYAAEDADVTLRLWRVLKPRLPSEGMTTVYETL 616

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P+I V+++ME  GI ID+  L ++S+E ++    LE+ I  L+GEK N+ SPKQ+GD+
Sbjct: 617  ERPLIAVLARMEARGISIDRATLARLSSEFAQGAARLEDEISGLAGEKINVGSPKQIGDL 676

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF K++ P   KT TG W T A  L+++    + + + IL WRQLSK++STY D+LPN++
Sbjct: 677  LFGKMQLPGATKTPTGAWSTKANVLDELAEAGHELPQKILAWRQLSKLRSTYTDALPNYV 736

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            N  T RVHT Y+LA+T TGRL+S EPNLQNIPI+T+ G++IRRAF++ P  KL+SADYSQ
Sbjct: 737  NPTTHRVHTSYALAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAVPGTKLVSADYSQ 796

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+LA IA+I  L Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGI
Sbjct: 797  IELRLLAEIAEIPALRQAFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGI 856

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL IPR EA  YIKRYF RFPGI  Y+++T+ + R++GYVET+FGRR HY +I
Sbjct: 857  SAFGLANQLGIPRDEAGQYIKRYFERFPGIRAYMDETRAYCREHGYVETLFGRRCHYPDI 916

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             +   SIR  NERAAINA +QG+AADI RRAMI +  +L D  L+ +MLLQ+HDELVFEV
Sbjct: 917  AASNPSIRAFNERAAINARLQGTAADIIRRAMIRMEGALADAGLSARMLLQVHDELVFEV 976

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            P+ E+     ++   ME A  P + L VPL+V  + ++NW+E +
Sbjct: 977  PDAEVEATLPVVRRVMETAARPAVELAVPLQVEARAADNWEEAH 1020


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/993 (43%), Positives = 605/993 (60%), Gaps = 29/993 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           + +H+FLVDGSSF++RA++ +     K+    D LP  A+  FC  + + ++        
Sbjct: 10  RGSHVFLVDGSSFVFRAYFQSIRQDAKYNYRSDRLPTGAVRLFCAKILQFVREGAAGVKP 69

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H A+IFD    +FR EIYP+YKA+RP  PE L+PQ PL+R A +AFG+  IE   +EAD
Sbjct: 70  THLAIIFDKSEKSFRKEIYPEYKAHRPDPPEDLVPQFPLMRAAVRAFGLTPIEQDLYEAD 129

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIE-HVIKKWGI 174
           D+IATY   A K+G  V I+S DKDLMQLV P   +YD     +EE++  E  V+  +G+
Sbjct: 130 DLIATYAEQARKKGADVLIVSADKDLMQLVGPGVTMYDPASGAREERLITEAEVVDYFGV 189

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           PPEK+V +QAL GDS DN+PG  GIG KTAA L+ EYG+L+ +L  A  IKQ KRRE + 
Sbjct: 190 PPEKVVDVQALAGDSTDNVPGAKGIGVKTAAQLINEYGDLDTLLEKAPGIKQPKRREALT 249

Query: 235 E--YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           E    +  RLS+KLV L  D P+   L+ L LE+ +  +L+SFL+A+EFT +  RVA  Y
Sbjct: 250 EPEAVKLIRLSKKLVELVRDAPVETKLDELGLEEPDAKKLVSFLQAMEFTTITRRVAELY 309

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             DA +IEP    +     +    E   D        + ++   +        TP  L  
Sbjct: 310 GVDAHDIEPDADFVGPAGWRARNGEVREDAPAAAPKGEKTAGKSKHGGKAEGMTPASLAA 369

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            R  +     I+  +Y  + +   +++WV +    G  +    T ++D    + + ++++
Sbjct: 370 VRRAEAQATKIDRSAYETVTSLASLEKWVAEATDAGVVAVDTETTSLDPMSCELVGVSLA 429

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDS---TGKNTLTKEI-----LSYLKKFFENEHFLK 464
               +          +I L      D     G   L  +I     ++ LK   E++  LK
Sbjct: 430 ITPGR--------ACYIPLQHREPGDGDLFGGAALLQGQIPLDKAIATLKPLLEDDAVLK 481

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
           I HN+KYD LVL RYG+ +   ED ML+SY LD+GR++H +  +  K L +       + 
Sbjct: 482 IAHNMKYDLLVLARYGVDVAPIEDTMLISYTLDTGRNNHGLDELTLKHLGHENIPFSAVA 541

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            S ++ I   +++  +  E+A E+++V L+LW  L+P+L  E + +VYE L++PM+  ++
Sbjct: 542 GSGRNFIGFARVALDRATEYATEDADVTLRLWRALKPRLAAEHMTNVYETLERPMVATLA 601

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI ID+ +L ++S E ++++  LE +I+DL+GE FNL SPKQLGDILF K+  P 
Sbjct: 602 GMERRGITIDRAMLSRLSGEFAQDMARLEADIFDLAGETFNLGSPKQLGDILFGKMGLPG 661

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KT TG W T+A  LE +    N   + IL+WRQLSK+KSTY D+LP  +NK T RVHT
Sbjct: 662 AKKTATGAWSTSASVLEDLANEGNDFARRILDWRQLSKLKSTYTDALPGFVNKETGRVHT 721

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            Y+LA+T TGRL+S +PNLQNIP++ + G+KIR+AF++ P   LISADYSQIELR+LAHI
Sbjct: 722 SYALAATTTGRLSSSDPNLQNIPVRNEAGRKIRKAFVASPGHVLISADYSQIELRLLAHI 781

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A I  L + F + +DIH M A+E+FGV ++ + P++RR AK INF IIYGIS F LA QL
Sbjct: 782 ADIPQLKKAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYGISAFGLANQL 841

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            IPR EA  YIKRYF RFPGI +Y+E TK  VR+ G V TIFGR  H+  I S  +S R 
Sbjct: 842 SIPREEAGAYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVCHFPRIGSANASDRA 901

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ERAAINAPIQG+AADI RRAM+ +  +L    L  +MLLQ+HDELVFE P++E     
Sbjct: 902 FYERAAINAPIQGAAADIIRRAMVRMDDALASEGLKAQMLLQVHDELVFEAPKKEAEATI 961

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +I    ME+A  P + L VPLKV+ + + NW E
Sbjct: 962 EIARRVMEEAPAPAVQLAVPLKVDARAAANWDE 994


>gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
 gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
          Length = 959

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/984 (42%), Positives = 610/984 (61%), Gaps = 55/984 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   L L+DGS +I+RA++  P L+RK DGLPV A++GFCNML KL++ +R +   SH A
Sbjct: 17  KAKRLVLIDGSGYIFRAYHGLPPLTRKSDGLPVGAVSGFCNMLVKLIKENRGDDAPSHLA 76

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANRP  PE L+PQ PLVR AT+AFG+PAIE+ GFEADD+I 
Sbjct: 77  VIFDAGSKTFRNDLYDGYKANRPPPPEDLIPQFPLVRDATRAFGLPAIELAGFEADDLIC 136

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY ++A ++GF VT+IS+DKDLMQLV+    + D VK   +  E VI+K+G+PPE +V  
Sbjct: 137 TYAHLAVQQGFEVTVISSDKDLMQLVNDKVTMMDPVKGTPVGREQVIEKFGVPPELVVDA 196

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAA LL EYG+L+++L  A  IKQ+KRR+ ++++ +   +
Sbjct: 197 QALIGDSVDNVPGAPGIGVKTAAQLLIEYGDLDSVLARAGEIKQEKRRQTLIDFKDQILM 256

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV LR D P+   +   +L+      L +FL A+EF  L  R+  +           
Sbjct: 257 SRELVRLRCDTPVPAEIATFVLKQPEADILAAFLAAMEFNSLARRIGGS----------- 305

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                      +++E+                +   ++I +    + L+  + +   + P
Sbjct: 306 -----------LSLES----------------TTALAQIPTAPISRPLYGVKTELGEKQP 338

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + D+Y  +   + +Q WV++ E     +    TD + A H+K   I++ST     DT+ 
Sbjct: 339 FDLDAYECVQTIEQLQTWVRRCEQAQVIAVDTETDDLSATHAKLCGISLST-----DTNC 393

Query: 423 KVETIFIDLS---VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   L+   +        K     + ++ LK   EN + LK+G NIKYD  VL RY
Sbjct: 394 ACYIPLGHLASDGLDFGGGDDLKQIPLDQAIALLKPVLENRNILKVGQNIKYDLSVLKRY 453

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           GI +  ++D MLMSYV++ G   H +  ++Q  L +T    K++  S K+      ++  
Sbjct: 454 GIDVAPYDDTMLMSYVVEGGLHGHGMDELSQLHLGHTPIPFKQVAGSGKTLKSFKFVALK 513

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +  ++A E+++V L+LW +L+P+L+ ++L  VYE L++ M   +S+ME+ GI++D  +L+
Sbjct: 514 EATQYAAEDADVTLRLWHVLKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQVLR 573

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S +    + ++E+  +   G  FNL+SP+QLG + F ++K P G +T +GQW T  + 
Sbjct: 574 NLSQDFGTRMNAIEQEAHAHLGRPFNLNSPQQLGVVFFDEMKLPGGKRTASGQWATDVKV 633

Query: 657 LEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           LE I  G N       + K +L++RQ++K+K TY D+L  + + +TQR+HT + LAST T
Sbjct: 634 LEDIAEGKNGTGAGQTLAKLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHLASTTT 693

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS EPNLQNIPI+T  G+KIR AFI+ P  KLISADYSQIELR+LAHI  I  L + 
Sbjct: 694 GRLASNEPNLQNIPIRTGEGRKIRTAFIAKPGCKLISADYSQIELRLLAHIGDIEQLKKA 753

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH M A+E+FGV +  ++ ++RR AK INF IIYGIS F LA QL I + EA+ 
Sbjct: 754 FSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINFGIIYGISGFGLANQLGIDQGEASR 813

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIK YF RFPGI +Y++ TK F+R NG+V+T+ GR+IH  EIN    +I+   ERAAINA
Sbjct: 814 YIKTYFERFPGIKDYMDATKQFLRDNGFVQTLMGRKIHIPEINGKGGAIKAFAERAAINA 873

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI RRAM+ +   L+     T+MLLQ+HDEL+FE PE E+     +I   M+ 
Sbjct: 874 PIQGTAADIIRRAMMRMQPRLDAAGFTTRMLLQVHDELIFEAPEAEVAAVIPLIQEVMQN 933

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A LP + + VPL V  K +NNW E
Sbjct: 934 AALPAVQISVPLVVEAKAANNWDE 957


>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
 gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
          Length = 1013

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1011 (42%), Positives = 609/1011 (60%), Gaps = 46/1011 (4%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56
            +Q  +H+FLVDGSSF++RA++ +     K+    DGLP  A+  FC  +++ ++      
Sbjct: 10   VQSGDHVFLVDGSSFVFRAYFQSIRQDAKYNYRSDGLPTGAVRLFCTKIFQFVREGAAGV 69

Query: 57   IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              +H A+IFD    +FR EIYP YK NR + PE L+PQ PL+R A +AFG+  +E   +E
Sbjct: 70   KPTHLAIIFDKSENSFRKEIYPPYKGNRSEPPEDLIPQFPLMRAAVRAFGLLPVEQDRYE 129

Query: 117  ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----------KEEKIDIE 166
            ADD+IATY   A + G  VTIIS DKDLMQL+ P   +YD            +E +I ++
Sbjct: 130  ADDLIATYARQARERGADVTIISADKDLMQLIGPGVSMYDPASGEAGAKGSREERRIGVD 189

Query: 167  HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
             V+  +G+PPEK+V +QAL GDS DN+PG  GIG KTAA L+ EYG+L+ +L  A  IKQ
Sbjct: 190  EVLAYFGVPPEKVVDVQALAGDSTDNVPGARGIGLKTAAQLIGEYGDLDTLLARAGEIKQ 249

Query: 227  KKRRENILEYAETA--RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
             KRRE + +    A  R SRKLV L  DV +  PL+ L L    G  L++F KALEFT L
Sbjct: 250  PKRREILTDADSVALIRTSRKLVELVCDVEVETPLDDLRLAAPEGKTLVAFCKALEFTTL 309

Query: 285  INRVATTYDCDAANIEPVVLDINTTENKG------------IAIETEIDRDTTIKTSQFS 332
              RVA     + A IEP   D +     G             A ET    +      + +
Sbjct: 310  TRRVAEACAVEPALIEP---DPDFAGEAGWRGRNGAPPPVSTAAETPSAENLPQGPKRNA 366

Query: 333  SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF 392
                +  +      P +L   R  +      +  +Y  IV+ + ++ ++ +    G  + 
Sbjct: 367  RYGAEAPQQTIATGPGELAAARAAQARAEKFDLGAYETIVSFERLEAYIAEAIESGIIAI 426

Query: 393  KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL------T 446
               T ++D   ++ + +++           +   + +      + D  G   L      +
Sbjct: 427  DTETSSLDPMQAELVGLSLCL------APGRAAYVPLRHRGEGAGDLFGGADLVPGQLDS 480

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
             E L+ LK   E    LKI  N K+D+LVL + GI +   +D +L+SYVLD+GR+ H + 
Sbjct: 481  DETLARLKPMLEAPDVLKIAQNAKFDQLVLAQRGIRLAPVDDTLLLSYVLDAGRTDHGMD 540

Query: 507  SIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
             +A+K+  +       +  S ++ I   +++  +  E++ E+++V L+LW +L+P+L  E
Sbjct: 541  VLAEKYFGHRPIQFGAVAGSGRTFIGFARVALDKATEYSAEDADVTLRLWRVLKPRLAAE 600

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            ++  VYE L++PM++ +++ME  G+ ID+ +L ++S E ++++  LE  I++L+GE FNL
Sbjct: 601  RMSAVYETLERPMVETLARMERRGVSIDRAILSRLSGEFAQDMARLEAVIFELAGESFNL 660

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             SPKQLGDILF K+      KT TG W T A  L+ +     P+   IL+WRQLSK+KST
Sbjct: 661  GSPKQLGDILFGKMGLAGARKTATGAWSTAAGVLDDLAEQGVPLAARILDWRQLSKLKST 720

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
            Y D+LP+++N  T RVHT Y+LA+T TGRL+S EPNLQNIP++ + G+KIR+AFI+PP +
Sbjct: 721  YTDALPSYVNPETGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFIAPPGR 780

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            KLISADYSQIELR+LAHIA I+ L   F  +LDIH M A+E+FGV +E + P++RR AK 
Sbjct: 781  KLISADYSQIELRLLAHIADISQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKA 840

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            INF IIYGIS F LA QL IPR EA  YIKRYF RFPGI  Y++ TK F R+NGYV TIF
Sbjct: 841  INFGIIYGISAFGLANQLAIPREEAGAYIKRYFERFPGIRAYMDATKQFARENGYVTTIF 900

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            GR+ HY  I +   S R  NERAAINAPIQGSAADI RRAM+ + ++LE   L+ +MLLQ
Sbjct: 901  GRKCHYPRITASNPSERAFNERAAINAPIQGSAADIIRRAMVRMDEALEKAGLSAQMLLQ 960

Query: 924  IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +HDELVFE P+EEI     ++   M  A  P + L VPL+V+ K + NW E
Sbjct: 961  VHDELVFEAPDEEIDATIDVVRKVMVDAPHPFLQLAVPLQVDAKAAQNWDE 1011


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/977 (42%), Positives = 595/977 (60%), Gaps = 72/977 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +H++LVDGS +I+RA++A P L+R  DG PV A+ GFCNMLWKLL++ + E   +H AVI
Sbjct: 11  SHVYLVDGSGYIFRAYHALPPLTRS-DGTPVGAVQGFCNMLWKLLEDLKGEDQPTHLAVI 69

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+ + TFRNEIY  YKANRP +PE L+PQ  L+R ATQAF +P IE++GFEADD+IATY
Sbjct: 70  FDHSSKTFRNEIYDQYKANRPDLPEDLVPQFSLIREATQAFELPCIEMEGFEADDLIATY 129

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             +A  +G  VT+ S+DKDLMQLV+    L D +K ++I  + VI+K+G+ P+K+V +Q+
Sbjct: 130 ARLAADKGARVTVASSDKDLMQLVNDQVTLLDPMKSKRIGHDEVIEKFGVAPDKVVDVQS 189

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++E AE AR+SR
Sbjct: 190 LAGDSVDNVPGVPGIGIKTAAQLIHEYGDLDTLLERAGEIKQPKRREKLIENAENARVSR 249

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            LV L+ DVPIT  L+     D +  +L+ FLK++EF  L  RV                
Sbjct: 250 LLVTLKPDVPITDELDVFGAADPDAEKLVGFLKSMEFRTLTRRV---------------- 293

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  +G+                   ++D+T    +                  P++
Sbjct: 294 ------EEGLG----------------GPVADETGDATA------------------PVD 313

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  +   + +++W++K +     +  + TD + A  S+ + ++++T           
Sbjct: 314 RSKYETVQTVEALEKWIEKAKHARVIAVDVETDALSAVASRLVGVSLATAPN-------- 365

Query: 425 ETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           E  +I L       + G     +    E L  LK   EN+  LK+G N KYD  V  RYG
Sbjct: 366 EACYIPLGHEGGDLADGGMKPDQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRYG 425

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
           + +  ++D ML+SYV  +G  +H +  +A++ L +T    KE+  + KS     +I    
Sbjct: 426 VRVAPYDDTMLISYVQAAGLHNHGMDELAERHLGHTCISFKEVCGTGKSQKRFSEIDLKT 485

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E+A E++++ L+LW LL+  L  + L  VYE L++P+  V++ ME+ G+++D   L +
Sbjct: 486 ATEYAAEDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQLSR 545

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S++ ++ +   EE  + L+G KFNL SPKQ+G+ILF ++  P G KTK+G W T A  L
Sbjct: 546 LSSDFAQKMAEAEETAHKLAGTKFNLGSPKQIGEILFGEMGLPGGKKTKSGAWSTDAAVL 605

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           +++    + + K +L WRQ SK+KSTY+D+L + IN  T RVHT +SLA+T TGRL+S E
Sbjct: 606 DELAAQGHDLPKALLTWRQFSKLKSTYSDALKDAINPNTGRVHTSFSLAATTTGRLSSSE 665

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G+KIR AF + P   +++ADYSQIELR+LAHIA +  L Q F    DI
Sbjct: 666 PNLQNIPIRTEEGRKIREAFTAEPGHVIVAADYSQIELRLLAHIADVEALKQAFREGQDI 725

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H + A+E+FGV +E + P  RR+AK INF IIYGIS F LA  L I R EA  YI  YF 
Sbjct: 726 HALTASEMFGVPLENMDPTTRRNAKAINFGIIYGISAFGLANNLGIGRDEAKSYIDSYFK 785

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           +FPGI +Y++  K+  +  G V TIFGRRIH   I     S+R   ER AINAPIQG+AA
Sbjct: 786 KFPGIKDYMDAMKDEAKAKGCVSTIFGRRIHLPGIKDKNPSVRQFTERQAINAPIQGAAA 845

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI RRAM+ +  +L D  L T+MLLQ+HDELVFE PE E     +++   M  A LP  N
Sbjct: 846 DIIRRAMVRMPGALSDAGLKTRMLLQVHDELVFEAPESEADQVIKLVTEVMSTAALPAQN 905

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL+V  K ++ W +
Sbjct: 906 LSVPLEVEAKAASTWGQ 922


>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1043

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1025 (43%), Positives = 617/1025 (60%), Gaps = 63/1025 (6%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56
            ++  + +FLVDGSSF++RA++ +     K+    D LP  A+  FC  L++ ++    + 
Sbjct: 29   IEAGDRVFLVDGSSFVFRAYFQSIRQDAKYNYRSDRLPTGAVRLFCTKLFQFIREGAADL 88

Query: 57   IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              +H A+IFD    +FR EIYP YK+NR + PE L+PQ PL+R + +AFG+  +E   +E
Sbjct: 89   KPTHLAIIFDKSENSFRKEIYPPYKSNRSEPPEDLIPQFPLMRASVRAFGLQPVEQDRYE 148

Query: 117  ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----------KEEKIDIE 166
            ADD+IATY   A   G  V IIS DKDLMQL+ P   +YD            +E +I  E
Sbjct: 149  ADDLIATYATQAHALGAEVLIISADKDLMQLIGPGVSMYDPASGEAGAKGARQERRIGQE 208

Query: 167  HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
             V+  +G+ P+K++ +QAL GDS DN+PG  GIG KTAA L+ +YG+L+N+L  A  IKQ
Sbjct: 209  EVVAYFGVGPDKVIDVQALAGDSTDNVPGARGIGIKTAAQLINDYGDLDNLLKLAREIKQ 268

Query: 227  KKRRENILEYAETARL---SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
             KRRE IL   E+  L   SRKLV L  DVP+ IPL  L L      +L+++LKALEFT 
Sbjct: 269  PKRRE-ILTEPESVGLIEISRKLVTLVRDVPVEIPLADLGLHAPEPHKLVAYLKALEFTT 327

Query: 284  LINRVATTYDCDAANIEP----------------VVLDI------NTTENKGIAIETEID 321
            L  RVA  Y  D A +EP                V+++         TE  G     E+ 
Sbjct: 328  LTKRVAEAYGVDLAAVEPDPAFCGAAGWRGRNGEVLVEAEPKAGEGATEPAGAEASGEVA 387

Query: 322  RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
              +  K +  +   +   K      P      R  +       + +Y  IV  + +   +
Sbjct: 388  TRSGPKRN--ARYGEPVEKAALGSGPGLFASARAAEGRAGTFEHSAYQTIVTLEALDAVI 445

Query: 382  QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST- 440
                  G  +    T ++D   +    +A  +L  +   +F V         HTS +   
Sbjct: 446  AAAYEAGLLAIDTETTSLDPMLAD---LAGLSLCAEPGKAFYVPV------GHTSGEGQD 496

Query: 441  ---GKNTLTKE-----ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLM 492
               GK  L  +     +L  LK   E+   LKIG N+KYD +VL ++G+ MR  +D +L+
Sbjct: 497  LFEGKGLLPGQLPIGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQHGVEMRPLDDTLLL 556

Query: 493  SYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            SYVLD+G + H +  +++K L +       +  S ++ I   +++  +  E+A E+++V 
Sbjct: 557  SYVLDAGLTDHGMDVLSEKHLGHKPIPFSAVAGSGRTFIGFARVAIDKATEYAAEDADVT 616

Query: 550  LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
            L+LW +L+P+L  EK+  VYE L++PMIDV+++ME  G+ ID  LL ++S++ ++++   
Sbjct: 617  LRLWRVLKPRLPAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLGRLSSDFAQDMARY 676

Query: 610  EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
            E  IY+L+GEKFNL SPKQLGDILF KL  P   KT TG W T A  LE +      +  
Sbjct: 677  EAEIYELAGEKFNLGSPKQLGDILFGKLGLPGAKKTATGAWSTAAGVLEDLAEQGVDLAA 736

Query: 670  NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
             IL+WRQL+K+KSTY D+LPN+IN  + RVHT Y+LA+T TGRL+S EPNLQNIP++ + 
Sbjct: 737  RILDWRQLAKLKSTYTDALPNYINPSSGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEA 796

Query: 730  GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
            G+KIRRAFI+PP +KL+SADYSQIELR+LAHIA I  L   F  +LDIH M A+E+FGV 
Sbjct: 797  GRKIRRAFIAPPGRKLVSADYSQIELRLLAHIADIKSLKNAFAENLDIHAMTASEMFGVP 856

Query: 790  IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
            +E +  ++RR AK INF IIYGIS F LA QL IPR EAA YIK+YF RFPGI  Y++ T
Sbjct: 857  VEGMPSEIRRRAKAINFGIIYGISAFGLANQLAIPREEAAAYIKKYFERFPGIRAYMDDT 916

Query: 850  KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
            K   R+NGYVETIFGR+ HY  I +   S R +NERAAINAPIQGSAADI RRAMI +  
Sbjct: 917  KKKARENGYVETIFGRKCHYPRIKASNPSERALNERAAINAPIQGSAADIIRRAMIHMEA 976

Query: 910  SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            +L   KL+ +MLLQ+HDEL+FEVP++E+     ++   M +A LP ++L VPL+V+ K +
Sbjct: 977  ALAAEKLSAQMLLQVHDELIFEVPDDEVEATIAVVRKIMVEAPLPAVHLSVPLQVDAKAA 1036

Query: 970  NNWQE 974
             NW E
Sbjct: 1037 QNWDE 1041


>gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2]
 gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2]
          Length = 935

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/984 (42%), Positives = 605/984 (61%), Gaps = 63/984 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML++ ++++++    +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFRYVEDNKQGDAPTHAA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ A TFRN IYP YKANRP++PE L PQ PL R AT+AF I  IE +G+EADDIIA
Sbjct: 65  VIFDHSAKTFRNAIYPAYKANRPELPEDLRPQFPLTRQATRAFNIACIEAEGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  VTI+S+DKDLMQLV     + D +K  +I  E V +K+G+ P++++ +
Sbjct: 125 TLACRARAAGGTVTILSSDKDLMQLVGDGVEMLDPMKNRRIGPEEVFEKFGVAPDRVIDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL+GDS+DN+PG PGIG KTAALL+QEYG+LE +L  A  I Q KRR  + + AE  R+
Sbjct: 185 QALSGDSVDNVPGAPGIGMKTAALLIQEYGDLETLLARAGEISQPKRRAALQDNAELIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV L   +P+ + L+ L +       ++SFL A+EF  L  RVA +    A  +E  
Sbjct: 245 SRRLVALDCAMPLEVTLDSLEVHPPQPEAVLSFLNAMEFRSLTTRVAASLKVAAPPME-- 302

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                   + ++ +   D       E  P              P
Sbjct: 303 ----------------------AARGAEVTGAHDA-----PEAAPS------------LP 323

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +  +Y  + +   +++W+  +   G  +    T ++D   ++ + I++           
Sbjct: 324 FDTAAYECVRDAAALERWIAAIRERGVVAVDTETTSLDEMRAELVGISLCVQAGT----- 378

Query: 423 KVETIFIDLS-VHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLV 475
                +I L       D  G + LT+      + L+ LK   E++  LKIG N+KYD  +
Sbjct: 379 ---ACYIPLGHRQGGGDLFGSSALTEGQMPVAQALALLKPVLEDDAILKIGQNMKYDAKI 435

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
           L R GIS+   +D MLMSY + +G +SH + +++ ++L +     K +L S KS++  D+
Sbjct: 436 LARLGISVAPIDDTMLMSYAMHAGLNSHGMDALSDQYLGHQPIAIKPLLGSGKSAVTFDR 495

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   Q   +A E++++ L+LW L +P+L    +  VYE L++P++ V++QME+ GIQ+D+
Sbjct: 496 VPIDQAVAYAAEDADITLRLWELFKPQLHRAHVTTVYETLERPLVPVLAQMEMAGIQVDR 555

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L ++S   ++ +  LE  I+D++GEKFN+ SPKQLG+ILF K+  P G K KTG + T
Sbjct: 556 DTLSRMSNAFAQKMAGLEAEIHDMAGEKFNVGSPKQLGEILFDKMSLPGGEKGKTGAYAT 615

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT YSL   +TGR
Sbjct: 616 GADVLEDLAT-EHELPGRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSLTGAVTGR 674

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIP++++ G++IR AF++P  ++L+S DYSQIELRILAH+A I  L Q F 
Sbjct: 675 LASTDPNLQNIPVRSEEGRRIREAFVAPKGRRLVSLDYSQIELRILAHVADIPALKQAFR 734

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH M A+E+F V +++++P +RR AK INF +IYGIS F LA  LRIPRS A  +I
Sbjct: 735 EGQDIHAMTASEMFNVPLDQMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRSAAQGFI 794

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF RFPGI  Y++ T  F + NG+V+T+FGR+IH  EIN+ +       +RAAINAPI
Sbjct: 795 DRYFERFPGIKGYMDDTVAFAKANGFVQTLFGRKIHTPEINA-RGPGAGFAKRAAINAPI 853

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ RRAM+ +  ++    +  KMLLQ+HDEL+FEV E+ + T   I    ME AC
Sbjct: 854 QGTAADVIRRAMVRMPAAIA--GIDAKMLLQVHDELLFEVAEDAVDTLIPIAREVMETAC 911

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
            P ++L V L V      NW E +
Sbjct: 912 DPAVHLSVRLTVEAGHGANWAEAH 935


>gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b]
 gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b]
          Length = 993

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/996 (43%), Positives = 596/996 (59%), Gaps = 38/996 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +H+FLVDGSSF++RA++ +     K+    D LP  A+  FC  L++ ++      + +H
Sbjct: 12  SHVFLVDGSSFVFRAYFQSIRQDAKYNYRADRLPTGAVRLFCAKLFQFVREGAAGVMPTH 71

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+IFD    +FR EIYPDYKA+R + P  L+PQ PL+R A +AFG+  IE   +EADD+
Sbjct: 72  LAIIFDKSENSFRKEIYPDYKAHRQEPPADLVPQFPLMRAAVRAFGLLPIEQDVYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----TVKEEKIDIEHVIKKWGIPP 176
           IATY  +A   G  V I+S DKDLMQL+     +YD    T +E +I    VI+ +G+PP
Sbjct: 132 IATYAKLARARGADVLIVSADKDLMQLIDDKVSMYDPASGTREERRIGYNEVIEYFGVPP 191

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           EK+V +QAL GDS DN+PG  GIG KTAALL+ EYG+L+ +L  A  IKQ KRRE + + 
Sbjct: 192 EKVVDVQALAGDSTDNVPGAKGIGVKTAALLINEYGDLDTLLARAGSIKQPKRREVLTDP 251

Query: 237 AETA--RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           A  A  R S+KLV L  D P+ I L+ L L   +G  L+SFL+A+EFT+L  R A TY  
Sbjct: 252 ASVALIRTSQKLVKLVDDAPLEISLDDLGLHQPDGKTLVSFLQAMEFTQLTRRAAETYGV 311

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +A  IEP    +     +G   E           +  + L    +      TP  L   R
Sbjct: 312 EANEIEPDPAFVGPAGWRGRNGEVAEAPAQQAPAAPAAKLPTPEA---GALTPAALAEAR 368

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            ++     I+   Y  +   + +  W+ +    G  +    T ++D      + ++++T 
Sbjct: 369 REEGVATKIDRSLYETVTTLERLDAWIAEAFAAGFVAMDTETTSLDPMSCDLVGVSLATA 428

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK-----------EILSYLKKFFENEHFL 463
             +          +I L  H +  S G + L             + ++ LK   E    L
Sbjct: 429 PGR--------ACYIPLR-HVA--SAGPDLLGGGEPPPAQIPFDDAIARLKPLLEARSVL 477

Query: 464 KIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEI 520
           KI  N+KYD LVL   G+ +   ED ML+SY LDSGR++H +  +A+K L +       +
Sbjct: 478 KIAQNMKYDLLVLACCGVDVAPIEDTMLISYALDSGRNNHGLDELAKKHLGHECIPFAAV 537

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
             S +S I   ++   +  E+A E+++V L+LW +L+P+L  E +  VYE L++PM+ V+
Sbjct: 538 AGSGRSFIGFARVPLDKATEYAAEDADVALRLWRVLKPRLAAEHMTSVYETLERPMVGVL 597

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           + ME  G+ ID+++L ++S E ++++  LE  IYDL+GE FNL SPKQLGDILF ++  P
Sbjct: 598 AAMERRGVAIDRNILSRLSGEFAQDMARLEAEIYDLAGESFNLGSPKQLGDILFGRMGLP 657

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KT TG W T+A  LE +    N     IL+WRQLSK+KSTY D+LP  +NK T RVH
Sbjct: 658 GAKKTATGAWSTSASVLEDLAESGNTFAARILDWRQLSKLKSTYTDALPGFVNKATNRVH 717

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T Y+LA+T TGRL+S EPNLQNIP++ + G+KIR+AF++ P   LISADYSQIELR+LAH
Sbjct: 718 TSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVAEPGHALISADYSQIELRLLAH 777

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           IA I  L Q F   +DIH   A+E+FGV ++ +   +RR AK INF IIYGIS F LA Q
Sbjct: 778 IADIPQLRQAFAEGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINFGIIYGISAFGLANQ 837

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L IPR EAA YIKRYF RFPGI +Y++KTK  VR+ G V TIFGR+ H+  I S  +S R
Sbjct: 838 LGIPREEAAAYIKRYFERFPGIRDYMDKTKRLVREQGVVTTIFGRKCHFPRIGSSNASER 897

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAINAPIQG+AADI RRAM  +  +L     + +ML+Q+HDELVFE P EE  T 
Sbjct: 898 AFFERAAINAPIQGAAADIIRRAMARMDAALATAGCSARMLMQVHDELVFEAPLEETETT 957

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             ++   ME+A  P   L VPL+V  + + NW E +
Sbjct: 958 IAVVKRVMEEAPHPAATLTVPLQVEARAAQNWDEAH 993


>gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
 gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
          Length = 1024

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1008 (42%), Positives = 613/1008 (60%), Gaps = 47/1008 (4%)

Query: 5    NHLFLVDGSSFIYRAFYAT---PLLS--RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            + + LVDGSSFI+RA++ +   P     R  DGLP  A+  FC  + + +Q        S
Sbjct: 24   DQVLLVDGSSFIFRAYFQSINQPERYNFRPSDGLPTGAVRLFCAKIAQFVQEGAAGVKPS 83

Query: 60   HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            H  ++FD    +FR EI+PDYK +RP  PE L  Q+PL+R A +AFG+  IE++ +EADD
Sbjct: 84   HLGIVFDKSEGSFRKEIFPDYKGHRPDAPEDLKRQMPLMREAVRAFGLEPIELERYEADD 143

Query: 120  IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHVI 169
            +IATY   AE  G  V I+S+DKDLMQLV      YD             E  +D   ++
Sbjct: 144  LIATYARQAEARGAGVIIVSSDKDLMQLVGDLVRFYDFESGQQGKPGYRPERNLDAAAIV 203

Query: 170  KKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            ++W G+ P ++    AL GD+ DN+PG+PGIG KTAA+L++E+G+LE +L  A+ IKQ K
Sbjct: 204  ERWEGLSPAQIGDALALIGDTSDNVPGVPGIGLKTAAVLIKEFGSLEALLERAAEIKQPK 263

Query: 229  RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            RRE +L   E ARLSR+LV L   VP+ +PLE L L   +  RL+ FLKA+EF  L  R+
Sbjct: 264  RRETLLANIEQARLSRRLVTLDEAVPVPVPLEALRLRKPDPDRLVGFLKAMEFNTLTRRI 323

Query: 289  ATTY--DCDAANIEPVVLDINTTE---NKGIAIETEIDRD-----TTIKTSQFSSLSDQT 338
            A+    D +A   +P +L          KG +  T    D        +   F+ L    
Sbjct: 324  ASLLHVDPEAVKPDPALLPGGAASYANEKGGSDVTPFFGDEARDQPAAEVDPFADLGLPD 383

Query: 339  SKINS----EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
            + +      E TP  L   R  +  + P + D+Y  I +   +  WV +    G  +   
Sbjct: 384  APLKPRGPVEATPGSLVAARAAEAVK-PFDTDAYETITSLDRLDAWVAEAAEAGVLAVDT 442

Query: 395  ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-----I 449
             T+ +DA  +  + ++++T   +          +I LS   S+D  G+  L  +     +
Sbjct: 443  ETNALDAHRADLVGVSLATAPGR--------AAYIPLSHRGSEDLFGEGLLPNQLPWEAV 494

Query: 450  LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             + LK   E+   LK+G N+KYD LVL R+GI +R ++D ML+SYVLD+G+ SH +  +A
Sbjct: 495  RARLKPLLEDPAVLKVGQNLKYDWLVLARHGIEVRPYDDTMLISYVLDAGKGSHGMDELA 554

Query: 510  QKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            ++ L +   T  ++  + ++ +  D++   +   +A E+++V L+LW L++P+L  E+  
Sbjct: 555  RRHLGHQPITFADVTGTGRTKVTFDRVPLDKATAYAAEDADVTLRLWRLMKPRLAAERRA 614

Query: 567  HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
             VYE L++P++ V+++ME  GI++D+ +L ++S + S++L  LE  I +++GE F++SSP
Sbjct: 615  TVYETLERPLVPVLARMESCGIRVDRGMLSRLSGDFSQSLARLEAEIQEMAGESFSVSSP 674

Query: 627  KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
            KQ+GDILF K   P   KT +GQW T A  LE++    + + K ILEWRQLSK+KSTY D
Sbjct: 675  KQIGDILFGKFGLPGAKKTPSGQWATPATLLEELAGQGHALPKKILEWRQLSKLKSTYTD 734

Query: 687  SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            +L  H ++ T RVHT ++LA+T TGRL+S +PNLQNIPI+T+ G++IR+AF++    KLI
Sbjct: 735  TLQEHADRETNRVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADEGHKLI 794

Query: 747  SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            SADYSQIELR+LAHIA I  L + F   +DIH   A+ +FGV +++++P +RR AKTINF
Sbjct: 795  SADYSQIELRLLAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINF 854

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
             IIYGIS F LA +L IP+ EAA +IK+YF RFPGI  YI+  K   R  GYV T+FGR 
Sbjct: 855  GIIYGISAFGLADRLGIPQGEAAAFIKQYFERFPGIRAYIDDIKKTCRDKGYVTTLFGRV 914

Query: 867  IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
             HY +I S     R   ER AINAPIQGSAADI RRAM+ +  +L    L T+MLLQ+HD
Sbjct: 915  CHYPQIRSNNPQERASVERQAINAPIQGSAADIIRRAMVRMEGALAAAGLTTRMLLQVHD 974

Query: 927  ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ELVFE P++E+  A  II   ME+A  P + LRVPL V  K + NWQE
Sbjct: 975  ELVFEAPDDEVERALPIIARVMEEAPHPAVQLRVPLAVEAKAATNWQE 1022


>gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
 gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
          Length = 937

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/980 (43%), Positives = 594/980 (60%), Gaps = 61/980 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++     +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 65  VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
             +  A   G +VTI+S+DKDLMQLV     + D +K ++I  + V +K+G+ PE++V +
Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L  A  IKQ KRR  I E AE  R+
Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+T  LE L +       L+ FL  +EF  L  RVA +       +EP 
Sbjct: 245 SKRLVALDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASL-----KVEP- 298

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +   + + +E  P+   +E+++  +  P
Sbjct: 299 ------------------------------PPAPTAAVLRNEGVPE--IVEQVE--AALP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++ SY  I + + +  W+ ++  +G  +    T ++D   ++ + I++           
Sbjct: 325 FDSASYACIRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCVEAGA----- 379

Query: 423 KVETIFIDLSVHTSQ-DSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLV 475
                +I L       D  G + L  +       LS LK   E+E  LKIG N+KYD  +
Sbjct: 380 ---ACYIPLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKI 436

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
           L R+GI +   +D MLMSY + +GR  H +  +   +L +     K +L S KS I  D+
Sbjct: 437 LARHGIRVAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDR 496

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   Q   +A E+++V  +LW L +P+L   ++  VYE L++P++ V+++ME+ G+Q+D+
Sbjct: 497 VPVEQAVCYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDR 556

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L ++S   ++ +  LE  I+ L+G  FN+ SPKQLG+ILF K+  P G K K G W T
Sbjct: 557 DTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGT 616

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  LE +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT YS+A   TGR
Sbjct: 617 GADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGR 676

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I  L Q F 
Sbjct: 677 LASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFR 736

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH M A+E+F V +E + P +RR AK INF +IYGIS F LA  LRIPR++A  +I
Sbjct: 737 EGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFI 796

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF RFPGI  Y+++T  F + NG+VET+FGRRI+  EIN+ K        RAAINAPI
Sbjct: 797 DRYFERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPI 855

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ RRAMI + K++    +   MLLQ+HDEL+FEV EE      + +   ME A 
Sbjct: 856 QGTAADVIRRAMIRMPKAI--RGMPATMLLQVHDELLFEVEEEAADALIERVREVMEGAA 913

Query: 953 LPKINLRVPLKVNIKVSNNW 972
            P + L VPL V      NW
Sbjct: 914 DPAVKLTVPLTVEAGRGLNW 933


>gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
 gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
          Length = 937

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/980 (42%), Positives = 594/980 (60%), Gaps = 61/980 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++     +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 65  VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
             +  A   G +VTI+S+DKDLMQLV     + D +K ++I  + V +K+G+ PE++V +
Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L  A  IKQ KRR  I E AE  R+
Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D P+T  LE L +       L+ FL  +EF  L  RVA +       +EP 
Sbjct: 245 SKRLVALDCDTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASL-----KVEP- 298

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +   + + +E  P+   +E+++  +  P
Sbjct: 299 ------------------------------PPAPTAAVLRNEGVPE--IVEQVE--AALP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++ SY  + + + +  W+ ++  +G  +    T ++D   ++ + I++           
Sbjct: 325 FDSASYACVRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCVEAGA----- 379

Query: 423 KVETIFIDLSVHTSQ-DSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLV 475
                +I L       D  G + L  +       LS LK   E+E  LKIG N+KYD  +
Sbjct: 380 ---ACYIPLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKI 436

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
           L R+GI +   +D MLMSY + +GR  H +  +   +L +     K +L S KS I  D+
Sbjct: 437 LARHGIRVAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDR 496

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   Q   +A E+++V  +LW L +P+L   ++  VYE L++P++ V+++ME+ G+Q+D+
Sbjct: 497 VPVEQAVCYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDR 556

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L ++S   ++ +  LE  I+ L+G  FN+ SPKQLG+ILF K+  P G K K G W T
Sbjct: 557 DTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGT 616

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  LE +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT YS+A   TGR
Sbjct: 617 GADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGR 676

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I  L Q F 
Sbjct: 677 LASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFR 736

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH M A+E+F V +E + P +RR AK INF +IYGIS F LA  LRIPR++A  +I
Sbjct: 737 EGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFI 796

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF RFPGI  Y+++T  F + NG+VET+FGRRI+  EIN+ K        RAAINAPI
Sbjct: 797 DRYFERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPI 855

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ RRAMI + K++    +   MLLQ+HDEL+FEV E+      + +   ME A 
Sbjct: 856 QGTAADVIRRAMIRMPKAI--RGMPATMLLQVHDELLFEVEEKAADALIERVREVMEGAA 913

Query: 953 LPKINLRVPLKVNIKVSNNW 972
            P + L VPL V      NW
Sbjct: 914 DPAVKLTVPLTVEAGRGLNW 933


>gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
 gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
          Length = 937

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/980 (42%), Positives = 595/980 (60%), Gaps = 61/980 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++     +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 65  VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
             +  A   G +VTI+S+DKDLMQLV     + D +K ++I  + V +K+G+ PE++V +
Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L  A  IKQ KRR  I E AE  R+
Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+T  LE L +       L+ FL  +EF  L  RVA +       +EP 
Sbjct: 245 SKRLVALDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASL-----KVEP- 298

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +   + + +E  P+   +E+++  +  P
Sbjct: 299 ------------------------------PPAPTAAVLRNEGVPE--IVEQVE--AALP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++ SY  + + + +  W+ ++  +G  +    T ++D   ++ + I++           
Sbjct: 325 FDSASYACVRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCVEAGA----- 379

Query: 423 KVETIFIDLSVHTSQ-DSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLV 475
                +I L       D  G + L  +       LS LK   E+E  LKIG N+KYD  +
Sbjct: 380 ---ACYIPLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKI 436

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
           L R+GI +   +D MLMSY + +GR  H +  +   +L +     K +L S KS I  D+
Sbjct: 437 LARHGIRVAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDR 496

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   Q   +A E+++V  +LW L +P+L   ++  VYE L++P++ V+++ME+ G+Q+D+
Sbjct: 497 VPVEQAVCYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDR 556

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L ++S   ++ +  LE  I+ L+G  FN+ SPKQLG+ILF K+  P G K K G W T
Sbjct: 557 DTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGT 616

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  LE +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT YS+A   TGR
Sbjct: 617 GADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGR 676

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I  L Q F 
Sbjct: 677 LASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFR 736

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH M A+E+F V +E + P +RR AK INF +IYGIS F LA  LRIPR++A  +I
Sbjct: 737 EGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFI 796

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF RFPGI  Y+++T +F + NG+VET+FGRRI+  EIN+ K        RAAINAPI
Sbjct: 797 DRYFERFPGIRGYMDETISFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPI 855

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ RRAMI + K++    +   MLLQ+HDEL+FEV EE      + +   ME A 
Sbjct: 856 QGTAADVIRRAMIRMPKAI--RGMPATMLLQVHDELLFEVEEEAADALIERVREVMEGAA 913

Query: 953 LPKINLRVPLKVNIKVSNNW 972
            P + L VPL V      NW
Sbjct: 914 DPAVKLTVPLTVEAGRGLNW 933


>gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
 gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
          Length = 937

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/980 (42%), Positives = 594/980 (60%), Gaps = 61/980 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++     +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 65  VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
             +  A   G +VTI+S+DKDLMQLV     + D +K ++I  + V +K+G+ PE++V +
Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L  A  IKQ KRR  I E AE  R+
Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+T  LE L +       L+ FL  +EF  L  RVA +       +EP 
Sbjct: 245 SKRLVALDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASL-----KVEP- 298

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +   + + +E  P+   +E+++  +  P
Sbjct: 299 ------------------------------PPAPTAAVLRNEGVPE--IVEQVE--AALP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++ SY  + + + +  W+ ++  +G  +    T ++D   ++ + I++           
Sbjct: 325 FDSASYACVRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCVEAGA----- 379

Query: 423 KVETIFIDLSVHTSQ-DSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLV 475
                +I L       D  G + L  +       LS LK   E+E  LKIG N+KYD  +
Sbjct: 380 ---ACYIPLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKI 436

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
           L R+GI +   +D MLMSY + +GR  H +  +   +L +     K +L S KS I  D+
Sbjct: 437 LARHGIRVAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDR 496

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   Q   +A E+++V  +LW L +P+L   ++  VYE L++P++ V+++ME+ G+Q+D+
Sbjct: 497 VPVEQAVCYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDR 556

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L ++S   ++ +  LE  I+ L+G  FN+ SPKQLG+ILF K+  P G K K G W T
Sbjct: 557 DTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGT 616

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  LE +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT YS+A   TGR
Sbjct: 617 GADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGR 676

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I  L Q F 
Sbjct: 677 LASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFR 736

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH M A+E+F V +E + P +RR AK INF +IYGIS F LA  LRIPR++A  +I
Sbjct: 737 EGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFI 796

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF RFPGI  Y+++T  F + NG+VET+FGRRI+  EIN+ K        RAAINAPI
Sbjct: 797 DRYFERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPI 855

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ RRAMI + K++    +   MLLQ+HDEL+FEV EE      + +   ME A 
Sbjct: 856 QGTAADVIRRAMIRMPKAI--RGMPATMLLQVHDELLFEVEEEAADALIERVREVMEGAA 913

Query: 953 LPKINLRVPLKVNIKVSNNW 972
            P + L VPL V      NW
Sbjct: 914 DPAVKLTVPLTVEAGRGLNW 933


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/982 (41%), Positives = 594/982 (60%), Gaps = 78/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +H++L+DGS +I+RA++A P L+R  DG P  A+ GFCNMLWKLL++ + +   SH AVI
Sbjct: 11  SHVYLIDGSGYIFRAYHALPPLTRT-DGTPTGAVQGFCNMLWKLLEDLKGDDQPSHLAVI 69

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   TFRN++Y  YKANRP  PE L+PQ  ++R AT+AFG P +E++ +EADDIIATY
Sbjct: 70  FDHSGKTFRNDLYDLYKANRPPAPEDLIPQFSIIRDATRAFGTPCVELENYEADDIIATY 129

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AE  G  VTI+S+DKDLMQLV+    ++D +K ++I +  V++K+G+ P+K++ +Q+
Sbjct: 130 ARQAEALGADVTIVSSDKDLMQLVTDKVSMFDAMKNKRIQVPEVMEKFGVGPDKVIDIQS 189

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DN+PG+PGIG KTAALL+ EYG+L+ +L  A  IKQK RRE +L +AE AR+SR
Sbjct: 190 LAGDSVDNVPGVPGIGVKTAALLINEYGDLDTLLERAGEIKQKGRREKLLAHAEDARISR 249

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            LV L+ D P+   LE   L + +   L+ FL+ +EF     +V                
Sbjct: 250 DLVTLKLDAPMPERLEEFGLAEPDPDVLVPFLREMEFRSFTRKV---------------- 293

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                             +  +   +     D T+ IN                      
Sbjct: 294 ------------------EEALGGPRADETGDATAPIN---------------------- 313

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            D Y  +   + +++W+ K    G  +    TD + +  S  + I+++T   +       
Sbjct: 314 RDDYECVTTMEALERWIAKSFEAGQIAVDTETDALSSTASGLVGISLATAPGR------- 366

Query: 425 ETIFIDLSVHTSQDSTGKNTLTK---------EILSYLKKFFENEHFLKIGHNIKYDKLV 475
              +I L+ H     TG    T          + L  LK   E+   LKIG N KYD  V
Sbjct: 367 -ACYIPLA-HVDPQGTGDMFDTGAAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGV 424

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
           L RYGI +  ++D ML+SYV+++G   H + ++A+  L +T    KEI  + K+ I  DK
Sbjct: 425 LSRYGIDVAPYDDTMLISYVMEAGLHGHGMDALAELHLGHTCIPFKEICGTGKNQITFDK 484

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   +   +A E++++ L+LW +L+P L+ +K+  VYE L++PM DV+S+ME  GI++D 
Sbjct: 485 VPLDKATLYAAEDADITLRLWEILKPALVAKKMATVYETLERPMADVLSKMERVGIKVDP 544

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L ++S++  + +++ E   ++ +G  FN++SPKQ+G+ILF ++  P G KTKTG W T
Sbjct: 545 DQLNRLSSDFGQKMMAAEAEAHEAAGRDFNVASPKQIGEILFGEMGLPGGKKTKTGAWST 604

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  L+Q+    + +   +LE+RQ +K+KSTY+DSL  HIN+ T+RVHT +SLA+T TGR
Sbjct: 605 DAAVLDQLAAEGHALPVALLEYRQFAKLKSTYSDSLFAHINRDTKRVHTSFSLAATTTGR 664

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR  FI+ P   L++ADYSQ+ELR+LAHIA +  L Q F 
Sbjct: 665 LSSTEPNLQNIPIRTEAGRQIREVFIAEPGHVLVAADYSQVELRLLAHIANVESLKQAFR 724

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH M A+E+FGV IE + P +RR AK INF +IYGIS F LA Q+ + R EA  +I
Sbjct: 725 DGTDIHAMTASEVFGVPIEGMDPMVRRKAKAINFGVIYGISAFGLANQIGVKRDEAKAFI 784

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF +FPGI  Y+++ K    + GYVETIFGRR H+  I     ++R   ER AINAPI
Sbjct: 785 DAYFEKFPGIRAYMDEMKAKAAETGYVETIFGRRAHFPGIRDKNPNMRMFAERQAINAPI 844

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ RRAMI +  +L    L  KMLLQ+HDELVFEVPE +      +    M +AC
Sbjct: 845 QGSAADVIRRAMIRMDDALNAANLDAKMLLQVHDELVFEVPENQAADLIALTAKVMGEAC 904

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
            P + L VPL V+ K    W E
Sbjct: 905 SPALELSVPLVVDAKAGRTWGE 926


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1031 (40%), Positives = 618/1031 (59%), Gaps = 61/1031 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ        
Sbjct: 16   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E+  +EAD
Sbjct: 76   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY   AE  G  V I+S+DKDLMQLVS     YD             E  +D E +
Sbjct: 136  DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L  AS IKQ 
Sbjct: 196  IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 255

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 256  KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315

Query: 288  VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323
            +A     D +A   +P +L                      D    + +  A     D +
Sbjct: 316  IAQMLHVDPEAVKPDPALLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375

Query: 324  TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D        +  + ++E TP  L   R  + S  P +  +Y  I    
Sbjct: 376  APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 435  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494

Query: 432  SVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
               +   +   +    +I     L  LK   E+   LK+G N+KYD  VLHRYGI +R F
Sbjct: 495  FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVRPF 554

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +   T  ++  + ++ +  D+++  +   +A 
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 615  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GE+F +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 675  QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL +RQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 735  GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  +DIH   A+
Sbjct: 795  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 855  AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 915  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +LE  KL  +MLLQ+HDELVFEVP++E+     +I   ME+A  P + LRVPL 
Sbjct: 975  MTRMEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034

Query: 964  VNIKVSNNWQE 974
            V  + + NW+E
Sbjct: 1035 VEARAAGNWEE 1045


>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
 gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
          Length = 1060

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1034 (41%), Positives = 628/1034 (60%), Gaps = 66/1034 (6%)

Query: 5    NHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            + + LVDGSSFI+RA++ +        SR  DGLP  A+  FC  + + LQ+    ++ +
Sbjct: 27   DQVILVDGSSFIFRAYFQSINQDQKYNSRPSDGLPTGAVRLFCTKIAQFLQDGAAGTMPT 86

Query: 60   HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E++ +EADD
Sbjct: 87   HLGIVFDKSEGSFRKEMFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELERYEADD 146

Query: 120  IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHVI 169
            +IATYT  AE  G  V I+S+DKDLMQLV P    YD             E  +D+E ++
Sbjct: 147  LIATYTRQAEARGAGVIIVSSDKDLMQLVGPQVRFYDFESGAKGKPGYRPERNLDVEAIV 206

Query: 170  KKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
             KW G+ P ++    AL GD+ DN+PG+PGIG KTAA L++E+G+LE +L  A  IKQ K
Sbjct: 207  AKWEGLQPNQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEFGSLEALLERAGEIKQPK 266

Query: 229  RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            RRE +L   + A+LSR+LV L  DVP+ +PL+ L +   N  +L+ FLKA+EF  L  R+
Sbjct: 267  RRETLLANVDQAKLSRRLVALMEDVPVPVPLDDLGVPQPNPEKLVGFLKAMEFNTLTRRI 326

Query: 289  ATTY--DCDAANIEPVVLDINTTENKGIAI-----------ETEIDRDTTIKTSQ----- 330
            A     D +A   +P +L        G A                D +T    ++     
Sbjct: 327  AQMLHVDPEAVKPDPRLLPGARPHGYGNAAGGSDAVPFFGDSVPPDPETAAAGAERPPGA 386

Query: 331  ----------FSSLS--DQTSKINS--EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376
                      F+ L   D  +K  +  E TP  +   R  + S  P +  +Y  + + + 
Sbjct: 387  APPEGGEIDPFADLDLPDAPAKPRAPVEATPGNVVAARAAE-SVAPFDTAAYETVSSLEQ 445

Query: 377  IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD-------TSFKVETIFI 429
            +  W+ + E  G  +    TD++DA  +  + ++++    +          + KV+    
Sbjct: 446  LDAWIAEAEEAGVIAVDTETDSLDAHRAGLVGVSLAVATGRACYIPLAHVQAAKVQADAT 505

Query: 430  DLSVHTSQDS------TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            DL    +  S       G+  L KE ++ LK   EN   LK+G N+KYD +VL RYGI +
Sbjct: 506  DLFGEGAAPSDVVEPVPGQIPL-KEAVARLKPLLENPGVLKVGQNLKYDWVVLARYGIEV 564

Query: 484  RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
              F+D ML+SYVLD+G+  H +  +A++ L +   T  ++  + ++ +  D+++  +   
Sbjct: 565  APFDDTMLISYVLDAGKGGHGMDELARRHLGHQPITFSDVAGTGRNKVTFDRVAIDKATA 624

Query: 541  HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            +A E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI++D+++L ++S 
Sbjct: 625  YAAEDADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQRGIRVDREMLSRLSG 684

Query: 601  EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            + S+ L+ LEE I + +GEKF++ SPKQ+GDILF K+  P   KT +GQW T A  LE++
Sbjct: 685  DFSQILVRLEEEIQEDAGEKFSVGSPKQIGDILFGKMGLPGAKKTPSGQWATPATLLEEL 744

Query: 661  NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                + + K ILEWRQLSK+KSTY D+L  H ++ T RVHT +SLA+T TGRL+S EPNL
Sbjct: 745  AQAGHELPKKILEWRQLSKLKSTYTDALQAHADRETARVHTSFSLAATTTGRLSSSEPNL 804

Query: 721  QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
            QNIPI+T+ G++IRRAF++ P  +LISADYSQIELR+LAH+A I  L + FE+ +DIH  
Sbjct: 805  QNIPIRTEEGRRIRRAFVAAPGNRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAA 864

Query: 781  VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
             A+ +FGV +++++P +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF +FP
Sbjct: 865  TASAMFGVPLKEMTPDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFEQFP 924

Query: 841  GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            GI +YIE TK   R  GYV T+FGR  HY +I S   S R   ER AINAPIQGSAADI 
Sbjct: 925  GIRDYIETTKKSCRDKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGSAADII 984

Query: 901  RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
            RRAM  +  +L   KL  +MLLQ+HDELVFEV E+E+     II   ME+A  P + L+V
Sbjct: 985  RRAMTRMEAALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVMEEAPAPALTLKV 1044

Query: 961  PLKVNIKVSNNWQE 974
            PL V    + NWQE
Sbjct: 1045 PLVVEANAAGNWQE 1058


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
          Length = 1047

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1031 (40%), Positives = 618/1031 (59%), Gaps = 61/1031 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ        
Sbjct: 16   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E+  +EAD
Sbjct: 76   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHV 168
            D+IATY   AE  G  V I+S+DKDLMQLVS     YD             E  +D E +
Sbjct: 136  DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L  AS IKQ 
Sbjct: 196  IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 255

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 256  KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315

Query: 288  VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323
            +A     D +A   +P +L                      D    + +  A     D +
Sbjct: 316  IAQMLHVDPEAVKPDPSLLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375

Query: 324  TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D        +  + ++E TP  L   R  + S  P +  +Y  I    
Sbjct: 376  APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 435  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494

Query: 432  SVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
               +   +   +    +I     L  LK   E+   LK+G N+KYD  VLHRYGI +R F
Sbjct: 495  FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVRPF 554

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +   T  ++  + ++ +  D+++  +   +A 
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 615  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GE+F +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 675  QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL +RQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 735  GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  +DIH   A+
Sbjct: 795  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 855  AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 915  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +LE  KL  +MLLQ+HDELVFEVP++E+     +I   ME+A  P + LRVPL 
Sbjct: 975  MTRMEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034

Query: 964  VNIKVSNNWQE 974
            V  + + NW+E
Sbjct: 1035 VEARAAGNWEE 1045


>gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
 gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
          Length = 966

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/980 (42%), Positives = 607/980 (61%), Gaps = 50/980 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKLL++ + ++  +H AVI+D
Sbjct: 27  LFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGDT-PTHLAVIWD 85

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +   TFRN +Y  YKA+RP  PE L+PQ PLVR AT+AFG+PAIE+ G+EADD+IA Y  
Sbjct: 86  HSEKTFRNTLYDQYKAHRPPPPEDLIPQFPLVREATRAFGVPAIELPGYEADDLIAAYAC 145

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G    I+S+DKDLMQLV     ++D +K  +I+ E V +K+G+ PE++V +QAL 
Sbjct: 146 KAREVGGEAVIVSSDKDLMQLVGDGVSMFDPMKNVRIEREQVFEKFGVYPEQVVDVQALC 205

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG PGIG KTAA L+ E+G+L+ +L  A  IKQ KRRE ++ +A+  RLSR L
Sbjct: 206 GDSVDNVPGAPGIGIKTAAQLITEFGDLDTLLERAGEIKQPKRRETLINFADQIRLSRAL 265

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L  D P+  PL+ L + + +   L +FL  +EF  L  RV    D  AA         
Sbjct: 266 VKLDCDTPLPEPLDDLKVREPDKEVLAAFLDQMEFRSLARRVG---DGSAA--------- 313

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                   A+   +DR      +  S++S   +   +   P               I++ 
Sbjct: 314 --------AVPGSLDRPAAPPKAPVSTVSYMGAAARAAAQPVA---------EPVTIDHA 356

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  + + + ++ WV K    G  +F   TD + +  +    ++++            E 
Sbjct: 357 AYACVRDLETLRAWVDKATAKGVVAFDTETDALSSATAGLCGVSLAIAPG--------EA 408

Query: 427 IFIDLSVHTSQDSTGKNTLT-------KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +I +  H  ++                ++++ LK   E+   LK+  N KYD  VL R+
Sbjct: 409 CYIPVG-HCEKEGLALEAAADLVQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH 467

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           GI +   ED ML+SYVL++G   H +  +++ WL +     K++  + K+ I    ++ S
Sbjct: 468 GIQVSPIEDTMLISYVLEAGLHGHGMDELSELWLGHKPIPFKQVAGTGKAQISFKHVALS 527

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E+++V L+L+  L+P+L  E LL VYE L++PM  V++ ME  GI++D + L+
Sbjct: 528 EATAYAAEDADVTLRLYETLKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALR 587

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S E S  +   E    +L G  FNL SPKQ+GD+LF +++   G KT TGQW T +  
Sbjct: 588 RLSNEFSLRMAEFEARATELVGRPFNLGSPKQIGDVLFGEMQIKGGKKTATGQWSTDSDV 647

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   ++ + + +L+WRQLSK+K TY ++L   I +RT RVHT Y+LA+T TGRL+S 
Sbjct: 648 LESLAL-EHELPRVLLDWRQLSKLKGTYTENLVAAIAERTGRVHTSYALAATTTGRLSSS 706

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+ G+KIR+AFI+P  K LISADYSQIELR+LAHI  I  L + F+  LD
Sbjct: 707 DPNLQNIPVRTEEGRKIRKAFIAPQGKVLISADYSQIELRLLAHIGDIPQLKRAFQEGLD 766

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH M A+E+F   IE + P +RR AK INF I+YGIS F LA QL IP+ EA  YIK YF
Sbjct: 767 IHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGIPQGEAGAYIKTYF 826

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFPGI  Y++ TK FVR++GYV TIFGR+I+  EI +     R   ERAAINAPIQG+A
Sbjct: 827 ERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPEIQAKSVGQRQFAERAAINAPIQGAA 886

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ RRAMI + ++L+   L+ +MLLQ+HDELVFE PE E  TA  +I + MEKA  P +
Sbjct: 887 ADVMRRAMIRMPEALQAAGLSARMLLQVHDELVFEAPEAEAETARGVIANVMEKAAEPAV 946

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V ++ ++NW E +
Sbjct: 947 ALSVPLTVEVRAAHNWDEAH 966


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1031 (40%), Positives = 617/1031 (59%), Gaps = 61/1031 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ        
Sbjct: 16   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E+  +EAD
Sbjct: 76   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY+  AE  G  V I+S+DKDLMQLVS     YD             E  +D E +
Sbjct: 136  DLIATYSRQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L  A  IKQ 
Sbjct: 196  IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERAGEIKQP 255

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 256  KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315

Query: 288  VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323
            +A     D +A   +P +L                      D    + +  A     D +
Sbjct: 316  IAQMLHVDPEAVKPDPALLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375

Query: 324  TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D        +  + ++E TP  L   R  + S  P +  +Y  I    
Sbjct: 376  APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 435  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494

Query: 432  SVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
               +   +   +    +I     L  LK   E+   LK+G N+KYD  VLHRYGI +R F
Sbjct: 495  FGESGAGADASDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVRPF 554

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +   T  ++  + ++ +  D ++  +   +A 
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDHVAIDKATAYAA 614

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 615  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GE+F +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 675  QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL +RQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 735  GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  +DIH   A+
Sbjct: 795  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 855  AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 915  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +LE  KL  +MLLQ+HDELVFEVP++E+     +I   ME+A  P + LRVPL 
Sbjct: 975  MTRMEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034

Query: 964  VNIKVSNNWQE 974
            V  + + NW+E
Sbjct: 1035 VEARAAGNWEE 1045


>gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001]
 gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001]
          Length = 1047

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1031 (40%), Positives = 616/1031 (59%), Gaps = 61/1031 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ+       
Sbjct: 16   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQDGAAGVKP 75

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E++ +EAD
Sbjct: 76   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELERYEAD 135

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY   AE  G  V I+S+DKDLMQLVS     YD             E  +D + +
Sbjct: 136  DLIATYARQAEARGAEVIIVSSDKDLMQLVSDRIRFYDFESGAKGKPGYRPERNLDRDAI 195

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+L  +L  A+ IKQ 
Sbjct: 196  IAKWEGLTPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLAQLLERAAEIKQP 255

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 256  KRRETLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315

Query: 288  VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323
            +A     D +A   +P +L                      D    + +  A     D  
Sbjct: 316  IAQMLHVDPEAVKPDPALLPGAQPHAYTNAAGGSDAVPFFGDAVPVDPETAAAPERTDGA 375

Query: 324  TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D        +  +  +E TP  L   R  +  + P +  +Y  I   +
Sbjct: 376  APPEAGEADPFADLDLPDQAPKKKRGAAEPTPANLVAARAAEAVK-PFDTAAYETIATVE 434

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--------DTSFKVETI 427
             ++ W+ +    G  +    TD +DA  +  + ++++T   +             K   +
Sbjct: 435  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494

Query: 428  FIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            F D      +       +  +  L  LK   E+   LK+G N+KYD  VLHRYGI +  F
Sbjct: 495  FGDGGAGADESDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDFSVLHRYGIDVAPF 554

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +   T  ++  + ++ +  D+++  +   +A 
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 615  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GEKF +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 675  QILARLEEEIQEDAGEKFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL WRQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 735  GHDLPKKILNWRQLSKLKSTYTDSLQEHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  LDIH   A+
Sbjct: 795  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATAS 854

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 855  AMFGVPLDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 915  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +L   KLA +MLLQ+HDELVFEVP++E+     +I H ME+A  P ++L VPL 
Sbjct: 975  MTRMEDALGAEKLAARMLLQVHDELVFEVPDDEVEATIPVIAHVMEEAPAPALSLSVPLV 1034

Query: 964  VNIKVSNNWQE 974
            V  + + NW+E
Sbjct: 1035 VEARAAGNWEE 1045


>gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
 gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
          Length = 937

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/975 (42%), Positives = 589/975 (60%), Gaps = 47/975 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++     +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 65  VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNISCIETEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
                A + G   TI+S+DKDLMQLV     + D +K ++I  + VI+K+G+PPE++V +
Sbjct: 125 ALACRAREAGGTCTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVIEKFGVPPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+QEYG+LE +L  A  IKQ KRR  I + AE  R+
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLIQEYGDLEGLLARAGEIKQPKRRAAIEDNAEQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   LE L +       L+ FL  +EF  L  RVA +       +EP 
Sbjct: 245 SKRLVELDCNTPLDFALEDLEVRLPVADELLGFLNRMEFRTLTTRVAASL-----KVEP- 298

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +     + +E  P+   +E+++  +  P
Sbjct: 299 ------------------------------PPAPTAFVVQNESVPE--IVEQVE--AALP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++ SY  + + + +  W+ ++   G  +    T ++D   ++ + I++  ++       
Sbjct: 325 FDSASYACVRDAEALAAWIARIRERGHVAIDTETTSLDEMRAELVGISL-CVEAGSACYI 383

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +  S D           LS LK   E++  LKIG N+KYD  +  R+GI 
Sbjct: 384 PLGHRAGGGDLFGSLDLVADQIPLDLALSMLKPVLEDDAILKIGQNMKYDAKIFARHGIR 443

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY + +GR  H +  +   +L +     K +L S KS I  D++   Q  
Sbjct: 444 VAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVDQAV 503

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++V L+LW L +P+L   ++  VYE L++P++ V+++ME+ G+Q+D+D L ++S
Sbjct: 504 CYAAEDADVTLRLWRLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMS 563

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ + +LE  I+ L+G  FN+ SPKQLG+ILF ++    G K K G W T A  LE 
Sbjct: 564 NAFAQKMAALEAEIHGLAGGPFNVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLED 623

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT YS+A   TGRLAS +PN
Sbjct: 624 LAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGRLASTDPN 683

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T+ G++IR AF++P  K L+S DYSQIELRILAHIA I  L Q F    DIH 
Sbjct: 684 LQNIPVRTEEGRRIREAFVAPKGKLLVSVDYSQIELRILAHIADIPALKQAFREGHDIHA 743

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M AAE+F V +E + P +RR AK INF +IYGIS F LA  LRIPR++A  +I RYF RF
Sbjct: 744 MTAAEMFNVPLEGMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFIDRYFERF 803

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++T  F + +G+V+T+FGRRI+  EIN+ K        RAAINAPIQG+AAD+
Sbjct: 804 PGIRAYMDETVAFAKAHGFVQTLFGRRINTPEINA-KGPGAGFARRAAINAPIQGTAADV 862

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI + K+L+   L  KMLLQ+HDEL+FEV E         +   ME A  P + L 
Sbjct: 863 IRRAMIRMPKALD--GLPAKMLLQVHDELLFEVDEAAADPVIARVREVMESASEPAVKLS 920

Query: 960 VPLKVNIKVSNNWQE 974
           VPL V+     NW E
Sbjct: 921 VPLTVDAGRGANWAE 935


>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
 gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
          Length = 973

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/982 (42%), Positives = 599/982 (60%), Gaps = 55/982 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKL+++ + ++  +H AVI+
Sbjct: 32  RLFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLMRDMQGDA-PTHLAVIW 90

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   TFRN +Y  YKA+RP  PE L+PQ PLVR AT+AFG+PAIE+ G+EADD+IA Y 
Sbjct: 91  DHSEKTFRNNLYDKYKAHRPPPPEDLIPQFPLVREATRAFGVPAIELPGYEADDLIAAYA 150

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
                 G    I+S+DKDLMQLV     ++D +K  +ID + V +K+G+ P+++V +Q+L
Sbjct: 151 CKVRDMGGEAVIVSSDKDLMQLVGDGVSMFDPMKGLRIDRDQVFEKFGVYPDRVVDVQSL 210

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++EYA+  RLSR+
Sbjct: 211 CGDSVDNVPGAPGIGIKTAAQLINEYGDLDTLLERAGEIKQPKRRETLIEYADQIRLSRQ 270

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D P+  P++ L++ + +   L  FL+ +EF  L  RV                D
Sbjct: 271 LVKLDCDTPLPEPIDDLVVREPDKTVLADFLELMEFRSLARRVG---------------D 315

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
            N +     A    +DR     T+    +S   +   +   P               I++
Sbjct: 316 GNAS-----ASPRTLDRPAAAPTAPVLGVSYMGAAARAAANPVA---------EPATIDH 361

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK--PIAIAISTLDQKDDTSFK 423
            +Y +I + + +  WV K    G  +F   TD + +  +    +++AIS           
Sbjct: 362 AAYVRIQDLETLNAWVAKATAKGIVAFDTETDALSSATAGLCGVSLAIS----------P 411

Query: 424 VETIFIDLSVHTSQDSTGKNTLT-------KEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            E  +I +  H  +D               +E+++ LK   E+   LKI  N KYD  VL
Sbjct: 412 GEACYIPVG-HCEKDGLALEAAADLVQVPMEEVIAALKPLLEDPAVLKIAQNAKYDIAVL 470

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            RYGI++   ED ML+SYVL++G   H +  +++ WL +   + K++  S K  I    +
Sbjct: 471 ARYGINVGPIEDTMLISYVLEAGLHGHGMDELSELWLGHKPISFKQVAGSGKGQISFKHV 530

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             ++   +A E+++V L+L+ +L+P+L  E LL VYE L++P+  V++ ME  GI++D D
Sbjct: 531 GLAEATAYAAEDADVTLRLYNVLKPRLAREGLLTVYETLERPLPAVLAAMENDGIRVDPD 590

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+++S E S  +   E    +L G  FNL SPKQ+GD+LF ++    G KT TGQW T 
Sbjct: 591 TLRRLSNEFSMRMADFEARAQELVGRPFNLGSPKQIGDVLFGEMALKGGKKTATGQWSTD 650

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN-KRTQRVHTFYSLASTMTGR 712
           +  LE +   ++ + + +L+WRQLSK+K TY ++L   I      RVHT Y+LA+T TGR
Sbjct: 651 SDVLEALAL-EHELPRVLLDWRQLSKLKGTYTENLIAAIAPGGGNRVHTSYALAATTTGR 709

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+T+ G+KIR+AF++ P K LISADYSQIELR+LAHI  I  L + F+
Sbjct: 710 LSSSDPNLQNIPIRTEEGRKIRKAFVAAPGKVLISADYSQIELRLLAHIGDIPQLKKAFQ 769

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             LDIH M A+E+F V IE +  ++RR AK INF I+YGIS F LA QL IP+ EA  YI
Sbjct: 770 EGLDIHAMTASEMFNVPIEGMPSEVRRRAKAINFGIVYGISAFGLANQLSIPQGEAGAYI 829

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           K YF RFPGI  Y+E TK FVR++GYV TIFGR+I+  +I     + R   ERAAINAPI
Sbjct: 830 KTYFERFPGIQAYMEATKAFVREHGYVTTIFGRKINIPDIGGKSVAHRQFAERAAINAPI 889

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ RRAM+ +  +L+   L+++MLLQ+HDELVFE PE E      +    M+ A 
Sbjct: 890 QGAAADVMRRAMVRMPGALKAAGLSSRMLLQVHDELVFEAPEAEAQATIDVAREVMQGAA 949

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
            P + + VPL V  + + NW E
Sbjct: 950 APAVTISVPLTVEARAAANWDE 971


>gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46]
 gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46]
          Length = 1016

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1008 (41%), Positives = 616/1008 (61%), Gaps = 47/1008 (4%)

Query: 5    NHLFLVDGSSFIYRAFYAT---PLLS--RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            + + LVDGSSFI+RA++ +   P     R  DG+P  A+  FC  + + +Q        S
Sbjct: 16   DQVLLVDGSSFIFRAYFQSINQPERYNFRPSDGMPTGAVRLFCAKIAQFVQEGAAGIQPS 75

Query: 60   HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            H  ++FD    +FR EI+PDYK +RP  P+ L  Q+PL+R A +AFG+  IE++ +EADD
Sbjct: 76   HLGIVFDKSEGSFRKEIFPDYKGHRPDAPDDLKRQMPLMREAVRAFGLEPIELERYEADD 135

Query: 120  IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----------IDIEHVI 169
            +IATY   AE  G  V I+S+DKDLMQLV      YD    +K          +D   ++
Sbjct: 136  LIATYARQAEARGAGVIIVSSDKDLMQLVGELVRFYDFESGQKGKPGYRPERNLDAAAIV 195

Query: 170  KKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            ++W G+ P ++    AL GD+ DN+PG+PGIG KTAA LL+E+G+LE +L  A+ IKQ K
Sbjct: 196  ERWEGLSPAQIGDALALIGDTSDNVPGVPGIGLKTAAALLKEFGSLEALLERAAEIKQPK 255

Query: 229  RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            RRE +L + + ARLSR+LV L   VP+ +PLE L L   +  RL+ FLKA+EF  L  R+
Sbjct: 256  RRETLLAHLDQARLSRRLVTLDEAVPVPVPLEALRLRKPDPERLVGFLKAMEFNTLTRRI 315

Query: 289  ATTY--DCDAANIEPVVLDINTT---ENKGIAIETEIDRDTTI-----KTSQFSSL---- 334
            A+    D +A   +P +L          KG +  T    D        +T  F+ L    
Sbjct: 316  ASLLHVDPEAVRPDPALLPGGAAAYANGKGGSDATPFFGDEATAPPAPETDPFADLDLPD 375

Query: 335  SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
            +    +  +E TP ++   R  +  + P +  SY  I     +  W+ +    G  +   
Sbjct: 376  APPRPRGPAEPTPGQVVAARAAEAVK-PFDTASYETITRLDRLDAWIAEAAEAGVVAVDT 434

Query: 395  ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-----I 449
             T+ +DA  +  + ++++T   +          +I L+   S+D  G+  L  +     +
Sbjct: 435  ETNALDAHRADLVGVSLATAPGR--------AAYIPLAHRGSEDLFGEGLLPDQLPWDAV 486

Query: 450  LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             + LK   E+   LK+G N+KYD LVL R+GI ++ ++D ML+SYVLD+G+ SH +  +A
Sbjct: 487  RARLKPLLEDPAVLKVGQNVKYDWLVLVRHGIEIQPYDDTMLISYVLDAGKGSHGMDELA 546

Query: 510  QKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            ++ L +   T  ++  + ++ +  D++   +   +A E+++V L+LW L++P+L  E   
Sbjct: 547  RRHLGHQPITFADVTGTGRAKVTFDRVPLDKATAYAAEDADVTLRLWRLMKPRLAAEHRA 606

Query: 567  HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
             VYE L++P++ V+++ME  GI++D+D+L ++S + S++L  LE  I +++GE F++SSP
Sbjct: 607  TVYETLERPLVPVLARMEREGIRVDRDMLSRLSGDFSQSLARLEAEIQEMAGETFSVSSP 666

Query: 627  KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
            KQ+GDILF KL  P   KT +GQW T A  LE++    +P+ + ILEWRQLSK+KSTY D
Sbjct: 667  KQIGDILFGKLGLPGAKKTPSGQWATPATLLEELATQGHPLPRKILEWRQLSKLKSTYTD 726

Query: 687  SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            SL  H  + + RVHT ++LA+T TGRL+S +PNLQNIPI+T+ G++IR+AF++    +LI
Sbjct: 727  SLQEHAERESDRVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADAGHQLI 786

Query: 747  SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            SADYSQIELR+LAH+A I  L Q F + LDIH   A+ +FGV + +++P +RR AKTINF
Sbjct: 787  SADYSQIELRLLAHMADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTINF 846

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
             IIYGIS F LA +L IP+ EA+ +IK+YF RFPGI  YIE TK   R  GYV T+FGR 
Sbjct: 847  GIIYGISAFGLADRLGIPQGEASAFIKQYFERFPGIRAYIEDTKKACRDKGYVTTLFGRV 906

Query: 867  IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
             HY +I S     R   ER AINAPIQG+AADI RRAM+ +  +L    L T+MLLQ+HD
Sbjct: 907  CHYPQIRSNNPQERASVERQAINAPIQGTAADIIRRAMVRMEGALAGAGLTTRMLLQVHD 966

Query: 927  ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ELVFE P++E+  A  II   ME+A  P + L VPL V  K + NWQE
Sbjct: 967  ELVFEAPQDEVARALPIIARVMEEAPQPAVRLTVPLAVEAKAAANWQE 1014


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1031 (40%), Positives = 617/1031 (59%), Gaps = 61/1031 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ        
Sbjct: 16   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E+  +EAD
Sbjct: 76   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY   AE  G  V I+S+DKDLMQLVS     YD             E  +D E +
Sbjct: 136  DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L  AS IKQ 
Sbjct: 196  IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 255

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 256  KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315

Query: 288  VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323
            +A     D +A   +P +L                      D    + +  A     D +
Sbjct: 316  IAQMLHVDPEAVKPDPSLLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375

Query: 324  TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D        +  + ++E TP  L   R  + S  P +  +Y  I    
Sbjct: 376  APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 435  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494

Query: 432  SVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
               +   +   +    +I     L  LK   E+   LK+G N+KYD  VLHRYGI +  F
Sbjct: 495  FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVTPF 554

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +   T  ++  + ++ +  D+++  +   +A 
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 615  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GE+F +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 675  QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL +RQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 735  GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  +DIH   A+
Sbjct: 795  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 855  AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 915  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +LE  +L  +MLLQ+HDELVFEVP++E+     +I   ME+A  P + LRVPL 
Sbjct: 975  MTRMEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034

Query: 964  VNIKVSNNWQE 974
            V  + + NW+E
Sbjct: 1035 VEARAAGNWEE 1045


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1031 (40%), Positives = 617/1031 (59%), Gaps = 61/1031 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ        
Sbjct: 21   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 80

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E+  +EAD
Sbjct: 81   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 140

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY   AE  G  V I+S+DKDLMQLVS     YD             E  +D E +
Sbjct: 141  DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 200

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L  AS IKQ 
Sbjct: 201  IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 260

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 261  KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 320

Query: 288  VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323
            +A     D +A   +P +L                      D    + +  A     D +
Sbjct: 321  IAQMLHVDPEAVKPDPSLLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 380

Query: 324  TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D        +  + ++E TP  L   R  + S  P +  +Y  I    
Sbjct: 381  APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 439

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 440  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 499

Query: 432  SVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
               +   +   +    +I     L  LK   E+   LK+G N+KYD  VLHRYGI +  F
Sbjct: 500  FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVTPF 559

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +   T  ++  + ++ +  D+++  +   +A 
Sbjct: 560  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 619

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 620  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 679

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GE+F +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 680  QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 739

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL +RQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 740  GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 799

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  +DIH   A+
Sbjct: 800  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 859

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 860  AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 919

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 920  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 979

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +LE  +L  +MLLQ+HDELVFEVP++E+     +I   ME+A  P + LRVPL 
Sbjct: 980  MTRMEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1039

Query: 964  VNIKVSNNWQE 974
            V  + + NW+E
Sbjct: 1040 VEARAAGNWEE 1050


>gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48]
 gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48]
          Length = 953

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/988 (43%), Positives = 611/988 (61%), Gaps = 58/988 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGS +I+RA++  P L+RK DGLPV A++GFCNML+KL++ +R E   SH AVIFD
Sbjct: 6   LVLIDGSGYIFRAYHGLPPLTRKSDGLPVGAVSGFCNMLYKLIKENRGEDAPSHLAVIFD 65

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFRN++Y  YKA+RP  PE L+PQ PL+R AT+AFGI  +E+ GFEADD+I TY +
Sbjct: 66  AGAHTFRNDLYDQYKAHRPPPPEDLIPQFPLIRQATRAFGIHNVELLGFEADDLICTYAH 125

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +A ++GF VTIIS+DKDLMQ+V+    + D VK   +  E VI+K+G+PPE +V  QAL 
Sbjct: 126 LAVQQGFEVTIISSDKDLMQVVNDHVSMLDPVKGTHVGREQVIEKFGVPPELVVDAQALI 185

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DN+PG PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE + ++ +   +SR+L
Sbjct: 186 GDSTDNVPGAPGIGIKTAAQLILEYGSLDALLKRAHEIKQPKRREALTDFRDQILMSREL 245

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V LR DVP   P+E   L+D N   L +FL  +EFT L  RV  +              +
Sbjct: 246 VRLRCDVPPPCPIEEFALKDPNAAELGAFLAEMEFTSLARRVGGS--------------L 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQ--FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            T E    A      RD T   S+  F +++  ++      TP+ L           P++
Sbjct: 292 ATLETAQAA-----PRDLTAPVSKPLFGTMAQVSAP--RPATPEALLT---------PVD 335

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  + + + ++ ++ +    G  +    TD++ A  S  + +++S            
Sbjct: 336 YSAYQCVQDIEALKAYLVQCRAAGVFAVDTETDSLSATASGLVGVSLSCAPGSG------ 389

Query: 425 ETIFIDLSVHTSQDS----TG---KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             ++I LS H S D     +G   K     E L+ LK   E+   LK+G NIKYD  V  
Sbjct: 390 --VYIPLS-HQSDDGGLALSGDEFKQIALVEALAELKPLLEDPTVLKVGQNIKYDLSVFA 446

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           RYGI +  ++D ML+SYVL+ G   H +  +++  L +T    K++  + KS+     + 
Sbjct: 447 RYGIRVAPYDDTMLISYVLEGGLHGHGMDELSELHLGHTPIPFKQVAGTGKSAKSFKFVD 506

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                E+A E++++ L+LW +L+P+L  ++LL VYE L++ M  V+S ME+ G++ID  +
Sbjct: 507 LKPATEYAAEDADITLRLWHVLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQV 566

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +S +    +  +E   + ++G  FNL+SP+QLG I F ++  P G KT TGQW T  
Sbjct: 567 LRLLSQDFGVRMGEIETEAHTVAGHPFNLNSPQQLGAIFFDEMALPGGKKTATGQWATDV 626

Query: 655 QDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           + LE+I      + G   + + +L++RQ++K+K TY D+L  + + +TQR+HT Y LAST
Sbjct: 627 KVLEEIAEKGTHDQGQR-LARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQLAST 685

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIPI+T  G+KIR AF++    KLISADYSQIELR+LAHI  I  L 
Sbjct: 686 TTGRLSSNEPNLQNIPIRTLEGRKIRTAFVARAGHKLISADYSQIELRLLAHIGDIGQLK 745

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F++ +DIH + A+E+FGV +E +  ++RR AK INF IIYGIS F L  QL I   EA
Sbjct: 746 KAFQDGIDIHALTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLGNQLGIDNQEA 805

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YIK YF RFPGI  Y++  K  V+  GYVETIFGRRIH  +I++  +  R   ERAAI
Sbjct: 806 GRYIKTYFERFPGIKAYMDAAKEQVKATGYVETIFGRRIHIPDIHAKSAGQRAFAERAAI 865

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +LE   L T MLLQ+HDEL+FE PE E+  A  +IV  M
Sbjct: 866 NAPIQGTAADIIRRAMIRMPGALEAAGLTTTMLLQVHDELIFEAPEAEVEAAKAVIVEVM 925

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           + A LP +++ VPL+V  K ++NW E +
Sbjct: 926 KHAALPALDISVPLEVEAKAADNWDEAH 953


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/985 (43%), Positives = 600/985 (60%), Gaps = 71/985 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + ++ +      +H A
Sbjct: 7   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLHRYVEANTGPEAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI+G+EADDIIA
Sbjct: 67  VIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRRATEAFNIACKEIEGYEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  A + G  VTIIS+DKDLMQLV     + D +K  +ID+E V  K+G+ P+++V +
Sbjct: 127 TLSCQAREAGGRVTIISSDKDLMQLVGGGVEMLDAMKNLRIDVEGVEAKFGVGPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG LE +L  A  IKQ KRR+ ++E+ E   L
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGTLEELLDRAGEIKQPKRRQTLIEHREQIEL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D P+   LE L + D +G  L+ FL  +EF  L  R+A     D   +EP 
Sbjct: 247 SKRLVQLDCDTPLDFTLEDLEVRDPDGETLLGFLNEMEFRTLTKRIA-----DQMGVEPP 301

Query: 303 VL-DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            L ++NT                                   +  P+ + +         
Sbjct: 302 ALPEVNTR--------------------------------GGDDAPETVEMP-------- 321

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST-------- 413
            I+ DSY  + N   +  W+ ++   G  +    T  +D   +  + I ++T        
Sbjct: 322 AIDPDSYETVTNADQLAVWIGRIRERGYVAVDTETTGLDEMRADLVGICLATEPGLACYV 381

Query: 414 -LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            L  K   + + E +F       ++D         E L  LK   E+E  LKIG N+KYD
Sbjct: 382 PLGHK---AAEGEGLF------ATEDLAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYD 432

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
             +L R GI +   +D ML+SY L++G   H + ++A ++LS+T    KE+L + K+ I 
Sbjct: 433 AKILKRCGIDVAPCDDTMLISYALNAGLHQHGMDALADRYLSHTCIPIKELLGTGKAMIT 492

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            DK+   +   +A E+++V L+LW +L+P+L  +K+  VYE L++P+  V+++ME+ GI+
Sbjct: 493 FDKVPIDKATRYAAEDADVTLRLWQVLKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIK 552

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D+D L ++S+  ++ + +LE  I++L+GE+FN+ SPKQLG+ILF K+    G K KTG 
Sbjct: 553 VDRDTLSRMSSAFAQKMGALEAEIHELAGERFNVGSPKQLGEILFDKMGMEGGKKGKTGA 612

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A  LE +    + +   +L+WRQLSK+KSTY DSL  HI+  T RVHT Y      
Sbjct: 613 YATGADVLEDLAT-LHELPARVLDWRQLSKLKSTYTDSLQTHIHPETGRVHTSYQQTGAN 671

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS +PNLQNIP++++ G++IR AFI+   K L+S DYSQIELRILAHIA I  L Q
Sbjct: 672 TGRLASTDPNLQNIPVRSEEGRRIREAFIAEEGKVLLSLDYSQIELRILAHIADIPALKQ 731

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   DIH   A+E+FGV +E+++P++RR AK INF +IYGIS F LA  LRIPR+EA 
Sbjct: 732 AFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQ 791

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +I RYF RFPGI +Y+ +T  F ++NGYV+T+FGRRIH  EI++ K        RAAIN
Sbjct: 792 GFIDRYFERFPGIKDYMAETTEFGKKNGYVQTLFGRRIHTPEIDA-KGPRAGFARRAAIN 850

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQG+AADI RRAMI +  ++    L  KMLLQ+HDELVFEV E      +++    ME
Sbjct: 851 APIQGTAADIIRRAMIRMPDAI--LGLPAKMLLQVHDELVFEVDEAAADEVAEVARGVME 908

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A  P + + VPL V+     NW E
Sbjct: 909 TAADPAVRIDVPLVVDAGQGRNWAE 933


>gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
 gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
          Length = 931

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/980 (42%), Positives = 601/980 (61%), Gaps = 72/980 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML++ L         +H AVIF
Sbjct: 11  HLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLYRYLGGLSGSDAPTHVAVIF 70

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           DY   +FRN+IY  YKANRP  PE L+PQ PL R AT+AF I   E++GFEADDIIAT  
Sbjct: 71  DYSGKSFRNQIYDKYKANRPPAPEDLVPQFPLTRDATRAFNIACYEVEGFEADDIIATLA 130

Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             + + EG   TIIS+DKDLMQLV     + D +K   ID + V +K+G+ P+++V +QA
Sbjct: 131 KQVRDSEG-RCTIISSDKDLMQLVGDGVQMLDPMKNRIIDTDGVREKFGVAPDRVVDVQA 189

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DN+PG PGIG KTAALL+ EYG+L+++L  A  IKQ KRRE++++ A+  R+SR
Sbjct: 190 LAGDSVDNVPGAPGIGIKTAALLINEYGDLDSLLERAGEIKQPKRRESLIDNADLIRISR 249

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-PVV 303
            LV L   + +   L+ L ++  +   L+ FL  +EF  +  RVA     DA  +E PVV
Sbjct: 250 DLVQLDEKMALDFTLDDLEVKPADPEALLGFLGEMEFRTMSKRVA-----DALGVEAPVV 304

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            +     N    +ET                                           PI
Sbjct: 305 AETEAAANP---VET------------------------------------------VPI 319

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           + D Y  + +   +Q+W+  +  IG  +    T +++   ++ + I++       +    
Sbjct: 320 DPDKYECVSDVAALQKWIDHIRAIGHVAVDTETTSLNEMRAELVGISLCV-----EAGIA 374

Query: 424 VETIFIDLSVHTSQDSTGKNTL------TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                I  +   S D  G   L      T  +L  LK   E+   LKIG N+KYD  +  
Sbjct: 375 CYIPLIHKAA-ASDDLFGSADLAEGQLDTNVVLDLLKPVLEDPAVLKIGQNMKYDAKIFA 433

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           RYG+ +  F+D MLMSY  ++G+ +H + S+++++L ++    K +L + KS+I  DK+ 
Sbjct: 434 RYGVKVAPFDDTMLMSYAQNAGKHNHSMDSLSERYLGHSPISIKTLLGTGKSAITFDKVP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            +   ++A E+++V L+LW  L P L +EK+  VYER+++P++ V+++ME+ GI++D+D 
Sbjct: 494 VADAVKYAAEDADVTLRLWQFLGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDRDT 553

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S   ++ +  LE  I++ +G+ FN+ SPKQLG+ILF KL+ P G K KTG + T A
Sbjct: 554 LSRMSNAFAQKMAGLEAEIHEKAGQSFNVGSPKQLGEILFDKLELPGGKKGKTGAYSTGA 613

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGRLA
Sbjct: 614 DILEDLAT-EHELPALVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYSIAGANTGRLA 672

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+++ G++IR AF++     L++ DYSQIELRILAH+AKI  L + F N 
Sbjct: 673 STDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDYSQIELRILAHVAKIDALKEAFYNG 732

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH + A+++F V +E + P +RR AK INF +IYGIS F LA  LRIPR+EA  +I  
Sbjct: 733 VDIHALTASQMFNVPLEGMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQAFINT 792

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI  Y+++T  F +++ +V+T+FGR+IH  +IN+ K       +RAAINAPIQG
Sbjct: 793 YFERFPGIRTYMDETVEFAKEHNFVQTLFGRKIHTPDINA-KGPGAGFAKRAAINAPIQG 851

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ RRAMI +  +++D  L  KMLLQ+HDELVFEV E+ +   +  +   ME A  P
Sbjct: 852 TAADVIRRAMIRMPAAIKD--LPAKMLLQVHDELVFEVAEDAVEDVTNAVRKVMENAAEP 909

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            I L VPL V+     NW E
Sbjct: 910 AIKLTVPLTVDAGQGANWAE 929


>gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
 gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
          Length = 950

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/989 (41%), Positives = 595/989 (60%), Gaps = 58/989 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A+AGF NM+++ +++++     +H A
Sbjct: 5   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFTNMIFRYIEDAKGADAPTHAA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFDY + TFRNEIYP YK NRP  PE L PQ PL R AT+AF +  +EI+G+EADDIIA
Sbjct: 65  VIFDYSSKTFRNEIYPAYKENRPPAPEDLRPQFPLTRDATRAFNLACLEIEGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTIIS+DKDLMQLV     + D +K   I  E V  K+G+ P +++ +
Sbjct: 125 TLARQAREAGGRVTIISSDKDLMQLVGDGVVMLDAMKNIVIGPEEVEAKFGVRPNRVIDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAA L+ +YG+LE +L  A  IKQ KRRE ++ +A+  R+
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAAQLIADYGDLETLLERAGEIKQPKRRETLVNFADQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L   VP+   L+ L +++     LI+FL+A+EF  L  RVA  +  +       
Sbjct: 245 SKRLVTLEDHVPLDFGLDSLAVKEPEPEALIAFLEAMEFRTLTRRVAEKFGRE------- 297

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                  +     +  SD  ++      PQ     + + ++  P
Sbjct: 298 -----------------------VPVGAPAPKSDAAARWAEGAAPQARLAPQAEAVA--P 332

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+   Y +I +   ++ ++   +  G  +    T ++D   ++ + +++ST   +     
Sbjct: 333 IDTALYQRITDPAALRDFLATAQATGVLAVDTETTSLDEMQAELVGVSLSTGPGR----- 387

Query: 423 KVETIFIDLSVHTSQDST-GKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                +I L   T  D   G   L        E L+ LK   E+E  LKIG N+KYD  +
Sbjct: 388 ---ACYIPLGHTTGGDDLFGTTALAPGQMPMDEALAILKPVLEDESLLKIGQNMKYDWKI 444

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
             R+GI +  F+D MLMSY + SG   H + ++++++L +     KE++ + K+ I  DK
Sbjct: 445 FARHGIRVAPFDDTMLMSYAMFSGLHGHGMDALSEEYLRHRPIPIKELIGTGKAQITFDK 504

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   +   +A E++ +  +LW   +P+L   ++  VYE L++P++ V+++ME+ G+++D 
Sbjct: 505 VPLDKATAYAAEDAEITYRLWAAFKPQLHRAQVTTVYETLERPLVPVLAEMEMAGVKVDP 564

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L ++S   ++ +  LEE I  L+G+ FN+ SPKQLG+ILF KL  P G K KTG + T
Sbjct: 565 TVLARMSNVFAQRMAGLEEEIQALAGQSFNVGSPKQLGEILFDKLGVPGGEKGKTGAYAT 624

Query: 653 TAQDLEQINCGDN-----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
            A  LE I   ++      +   +L+WRQ++K+KSTY D+L  H+N  T RVHT YS+A 
Sbjct: 625 GADVLEDITTMEDHKQAADLAAKVLDWRQIAKLKSTYTDALQTHVNPDTGRVHTSYSIAG 684

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRLAS +PNLQNIP+++D G++IR AF++ P  +++S DYSQIELRILAH+A +  +
Sbjct: 685 ANTGRLASTDPNLQNIPVRSDEGRRIREAFVATPGHRIVSLDYSQIELRILAHVANLPEM 744

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F   +DIH M A+E+FGV +E + P +RR AK INF +IYGIS F LA  LRIPRSE
Sbjct: 745 KAAFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINFGVIYGISGFGLARNLRIPRSE 804

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +I RYF RFPGI  Y+++T  F + NG+V+T+FGR+IH  EIN+ K       +RAA
Sbjct: 805 AQGFIDRYFERFPGIRAYMDETVAFAKANGFVQTLFGRKIHTPEINA-KGPGAGFAKRAA 863

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI RRAMI +  ++    L  KMLLQ+HDEL+FEV E  +          
Sbjct: 864 INAPIQGAAADIIRRAMIRMPAAIA--HLPAKMLLQVHDELIFEVAESAVDPLIATARAV 921

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A  P + L VPL V+     +W E +
Sbjct: 922 MEGAADPAVRLSVPLVVDAGQGASWAEAH 950


>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255]
 gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
          Length = 932

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/983 (41%), Positives = 602/983 (61%), Gaps = 68/983 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS FI+RA++A P L+RK DGLPV A++GFCNML+K++++ +     +H  
Sbjct: 5   KGHHLHLIDGSGFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLFKIIEDQKGSDAPTHLV 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR++IYP+YK NRP  PE L+PQ PL R AT+AFG+  IE +GFEADDI+A
Sbjct: 65  VVFDAKGKTFRSDIYPEYKMNRPPAPEDLIPQFPLTRDATRAFGLACIEQEGFEADDIMA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTI+S+DKDLMQLV     +YD +K ++I  E V +K+G+ P +++ +
Sbjct: 125 TLAVQAREAGGQVTIVSSDKDLMQLVGNGVEMYDAMKNKRIGPEQVEEKFGVAPNRVIDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GDS+DN+PG PGIG KTAALL+ EYG+L+++L  AS IKQ KRRE ++E A+  R 
Sbjct: 185 QSLAGDSVDNVPGAPGIGVKTAALLINEYGDLDSLLERASEIKQPKRRETLIENADQIRT 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV L+TD+ +    +   ++  +   ++ FL  +EF  +  R+A      A  I   
Sbjct: 245 SRDLVTLKTDMEMDCDFDDFQVQAPDPEVVLKFLAEMEFRTMSARIANKLGVSAPEI--- 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                              + +IN+E        +++ +     
Sbjct: 302 ----------------------------------SSDRINNE--------DQITEAESIS 319

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           IN + Y  I N  D+ +WV K+   G  +    T  ++      + I +S          
Sbjct: 320 INTEKYELIDNINDLNRWVTKIYQRGYVAVDTETTGLNDMIVDLVGICLSVEIG------ 373

Query: 423 KVETIFIDLSVHTS--QDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474
             E  +I +  HT+   D  G  +L        E L  L+   ++   +KIG N+KYD  
Sbjct: 374 --EACYIPVG-HTNGENDLFGGASLCNGQINLDEALEILRPVLQDPSIIKIGQNVKYDTK 430

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           +  RY +++   +D ML+SY ++ G+ +H +  +++++L++   + K +L S KS+I  D
Sbjct: 431 IFARYDVNLAPVDDTMLLSYAINGGKHNHGMDYLSERYLNHKPISIKTLLGSGKSAITFD 490

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+S +    +A E++++ L+LW L +P L    +  +YE L++P+I V+++ME+ GI++D
Sbjct: 491 KVSINDAVNYAAEDADITLRLWKLFKPMLHESSVTKIYETLERPLIPVLAKMEMNGIKVD 550

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           ++ L ++S   ++++  LE  IY+L+G+ FN+ SPKQLG+ILF KL+ P G K KTG + 
Sbjct: 551 RNTLSRMSNNFAQSMSGLEAEIYNLAGQTFNVGSPKQLGEILFDKLELPGGKKGKTGAYG 610

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LE +    + +   +L+WRQ+SK+KSTY D+L  HIN  T RVHT Y ++   TG
Sbjct: 611 TGVDVLEDLASEGHELPVKVLDWRQMSKLKSTYTDALQGHINPNTGRVHTSYVISGASTG 670

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+++ G+KIR AFI+     L+S DYSQIELRILAHIAKI  L Q F
Sbjct: 671 RLSSTDPNLQNIPIRSEAGRKIREAFIAEEGNVLLSLDYSQIELRILAHIAKIDTLKQAF 730

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH + A+++F V +E + P +RR AK INF +IYGIS F LA  LRIPR EA  +
Sbjct: 731 HEGQDIHALTASQMFNVPLENMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRKEAQSF 790

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF RFPGI  Y+++T +F ++NGYVET+FGR+IH  EIN+ K       +RAAINAP
Sbjct: 791 IDTYFERFPGIRTYMDETVSFAKENGYVETLFGRKIHTSEINA-KGPQAGFAKRAAINAP 849

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AAD+ RRAM+ +  ++    L  KMLLQ+HDEL+FEV ++ +   ++++ + MEKA
Sbjct: 850 IQGTAADVIRRAMVQMPNAIS--HLPAKMLLQVHDELIFEVNKDALNETTEVVRNIMEKA 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
             P + L VPL V+    NNW +
Sbjct: 908 SEPVVKLDVPLVVDAGFGNNWAD 930


>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
 gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
          Length = 971

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/984 (41%), Positives = 585/984 (59%), Gaps = 60/984 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+++D S++I+RA++A P L+RK DGLPV A+ G+CNMLWKLL++ +     +H   IFD
Sbjct: 26  LWMIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGADGPTHLVAIFD 85

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +   TFRN +Y  YKA+RP  PE L+PQ PLVR AT AFG+  +E+ G+EADD+IATY  
Sbjct: 86  HSDKTFRNTLYDQYKAHRPPAPEDLVPQFPLVREATAAFGVHCVELPGYEADDLIATYAC 145

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I+S+DKDLMQL+     ++D +K+ ++    V +K+G+ PEKM+ LQAL 
Sbjct: 146 KARDAGGEAVIVSSDKDLMQLIGGGVVMWDPMKDRRLAEPEVFEKFGVGPEKMIDLQALI 205

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG PGIG KTAA LL EYG+L+ +L  A  IKQ KRRE ++ +A+  RLSR+L
Sbjct: 206 GDSVDNVPGAPGIGPKTAAQLLDEYGDLDALLARAGEIKQPKRRETLINFADQIRLSREL 265

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L  D P   P+E   + D +   L +FL  +EF  L  RV    D  A          
Sbjct: 266 VRLTCDAPAPEPIEDFAVRDPDPETLSAFLDKMEFRSLQRRVG---DGRA---------- 312

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
             +E    A +   +    + T ++  + +  ++        ++F            + +
Sbjct: 313 GPSETSAFAPKRAPNLSAPVATPRYGQVVEGPAE-------AQIF------------DLE 353

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +   + + +W+ +    GS  F   T ++ A H+    ++++            E 
Sbjct: 354 AYECVQTEEALDRWIARAVEAGSVGFDTETSSLSATHAGLCGVSLAVGPN--------EA 405

Query: 427 IFIDLSVHTSQDSTGKNTL---------------TKEILSYLKKFFENEHFLKIGHNIKY 471
            +I L+ H  +   G+  L                 + L+ LK   EN   LK+  N KY
Sbjct: 406 CYIPLT-HEHEPQAGEGGLFGVPGEAREPIQQLDKAKALAKLKVLLENPSVLKVLQNAKY 464

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           D  V+ R GI +  ++D ML+SYVL+ G   H +  +A+  L +     K +  + KS  
Sbjct: 465 DLAVMARRGIRVAPYDDTMLISYVLEGGLHGHGMDELARLHLGHDPVPFKSVAGTGKSQK 524

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
               ++     ++A E+++V L+LW LL+P+L  E L  VYE L++P+  V+++ME  G+
Sbjct: 525 SFRHVALKPATQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAGV 584

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID D LK++S+E    +  LE   ++++G  FN+ SP+Q+G+ILF +L  P G KT +G
Sbjct: 585 RIDPDRLKRLSSEFGLRMAELEAQAHEIAGRPFNIGSPRQIGEILFGELNLPGGKKTASG 644

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T A  LE +    + + + +L+WRQLSK+K TY D+L    +  T RVHT Y LA+ 
Sbjct: 645 QWGTDASVLEDL-AATHALPRVLLDWRQLSKLKGTYTDALTAAADPATDRVHTSYQLAAA 703

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRLAS +PNLQNIPI+T+ G++IR+AFI+ P   LISADYSQIELR+LAHI  I  L 
Sbjct: 704 TTGRLASSDPNLQNIPIRTETGREIRQAFIAAPGHLLISADYSQIELRLLAHIGDIPELK 763

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+  LDIH   A+E+FGV +E +  + RR AK INF I+YGIS F LA QL I + EA
Sbjct: 764 RAFKAGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIVYGISAFGLAAQLGIDQGEA 823

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YIK YF RFPGI  Y++KT+  VRQ G+V T+FGRRIH   I+S   + R   ERAAI
Sbjct: 824 GAYIKTYFDRFPGIRTYMDKTRAEVRQAGFVSTVFGRRIHIPAIHSKSGAERQFGERAAI 883

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L +  L T+MLLQ+HDELVFE PE E   A  +I   M
Sbjct: 884 NAPIQGAAADIIRRAMIRMPTALAEAGLTTRMLLQVHDELVFETPEAEADRAITVIKRVM 943

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           E A  P + L VPL V+ + + NW
Sbjct: 944 ETASDPAVALTVPLVVDARAAPNW 967


>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
 gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
          Length = 944

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/981 (42%), Positives = 587/981 (59%), Gaps = 64/981 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-SHFAVIF 65
           L+LVDGS FI+RAF+A P L+RK DGLPV A++GFCNM+WKLL   + ++ A +H AV+F
Sbjct: 17  LYLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMIWKLLVEMKTQADAPTHLAVVF 76

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   TFRN++Y  YKA+RP  PE L+PQ PLVR AT+AFG+P +E+ G+EADD+IA Y 
Sbjct: 77  DHSEQTFRNKLYDQYKAHRPPPPEDLVPQFPLVREATKAFGVPCLELPGYEADDLIAAYA 136

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
                 G  VTI+S+DKDLMQLV P   + DT+K  +I IE VI+K+G+ P+K+V +QAL
Sbjct: 137 CKVRDMGGEVTIVSSDKDLMQLVGPRVFMLDTMKNARIGIEQVIEKFGVTPDKVVDVQAL 196

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTA+ L+ EYG+L+ +L  A+ IKQ KRR+ ++EYA+  RLSR+
Sbjct: 197 CGDSVDNVPGAPGIGIKTASALINEYGDLDTLLARATEIKQPKRRDTLIEYADQIRLSRE 256

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D P+  PL+ L ++D +   L  FL+ +EF  L  RV    D  A +      D
Sbjct: 257 LVRLDCDTPLPSPLDELAVDDPDPAVLSEFLERMEFRTLARRVG---DGKAGSAGQAAAD 313

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
               E +                                           +K +   I+ 
Sbjct: 314 TPRPETRAP-----------------------------------------EKPNHGKIDV 332

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  + +   +  W+ K    G  +F   TD + +  +    ++++            E
Sbjct: 333 TAYACVRDLPALDAWIAKAYARGIVAFDTETDALSSATAGLCGVSLAVAPG--------E 384

Query: 426 TIFIDLSVHTSQDS---TGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +I L  H   +         LT+    + ++ LK   E+   LK+  N KYD  VL R
Sbjct: 385 ACYIPLG-HCEAEGLQLEAAADLTQIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSR 443

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535
           YGI +   +D ML+SYVL++G  +H +  +++  L +     K +  + K+      +  
Sbjct: 444 YGIEVGPIDDTMLISYVLEAGLHNHGMDELSKLGLDHEPIAFKSVAGTGKAQKSFKYVGL 503

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           S+   +A E+++V L+LW  L+P+L  E L  VYE L++PM  V++ ME  G ++D + L
Sbjct: 504 SEATCYAAEDADVTLRLWEHLKPRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERL 563

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +Q+S E  + +  LE   + L+G  FNL SPKQ+G++LF ++   SG  T TG + T A 
Sbjct: 564 RQLSNEFGQRMAELEAEAHRLAGRPFNLGSPKQIGEVLFKEMGLASGRVTATGAFSTDAS 623

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +    + + + +L+WRQLSK+K TY D+L   I+++T RVHT +SLAST TGRL+S
Sbjct: 624 MLEDLAAQGHELPRILLDWRQLSKLKGTYTDALVAAISEQTGRVHTSFSLASTTTGRLSS 683

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNL NIPI+T+ G+KIRRAF++ P K LISADYSQIELR+LAHI  I  L + F   L
Sbjct: 684 SDPNLMNIPIRTEEGRKIRRAFVAEPGKVLISADYSQIELRLLAHIGDIPQLKRAFREGL 743

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH M A+E+FGV +E +  + RR AK INF IIYGIS F LA QL IP+ EA  YIK Y
Sbjct: 744 DIHAMTASEMFGVPVEGMPSETRRRAKAINFGIIYGISAFGLANQLGIPQDEAGAYIKTY 803

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPGI  Y+++TK   R  G+V TIFGR+++   + S   + R   +RAAINAPIQGS
Sbjct: 804 FERFPGIRAYMDRTKQAARSQGFVHTIFGRKVNIPAVKSKSQAERAFGDRAAINAPIQGS 863

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ RRAMI +  +L+   L  +MLLQ+HDELVFE PE E     +I    MEKA  P 
Sbjct: 864 AADVMRRAMIRMPGALKAEGLTARMLLQVHDELVFEAPEAEAEAVIRIAKAVMEKAAEPA 923

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           + + VPL V  + + NW + +
Sbjct: 924 VAISVPLVVEARAAPNWDDAH 944


>gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
 gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
          Length = 929

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/975 (41%), Positives = 595/975 (61%), Gaps = 78/975 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +++HL+L+D S++++RAF+A P L+R  DGLPV A+AGFCNML+KLL++ + +   +HFA
Sbjct: 8   QDSHLYLIDASAYVFRAFHALPPLTRASDGLPVGAVAGFCNMLFKLLEDLKGKERPTHFA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            IFD    TFRNEIYP YKANR   PE L+PQ PLVR A  AF   AIE  GFEADD+IA
Sbjct: 68  CIFDASGDTFRNEIYPLYKANRSDPPEELVPQFPLVRRAAVAFAAHAIEQTGFEADDLIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY  +AE +G  VTI+S+DKDLMQL++    + D +K + +  + VI+K+G+ PE +V +
Sbjct: 128 TYARLAEAKGARVTIVSSDKDLMQLITDKVLMLDPMKNKLLGRDDVIEKFGVGPEGVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L+GDS+DN+PG PGIG KTAA LL EYG +E +L  A  IKQ KRRE ++ +A+  R+
Sbjct: 188 QSLSGDSVDNVPGAPGIGIKTAAQLLGEYGTVEALLERAGEIKQPKRRETLINFADQVRV 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L+ DVP+ +P+E L ++D +   LI FL+ +EF  +  RV    + +       
Sbjct: 248 SKQLVQLKEDVPVVLPVEELAVQDPDPKVLIGFLEEMEFRTITRRVREQMELEG------ 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                       AIE           S ++ + D                          
Sbjct: 302 ------------AIEAPAPEAQPFDVSAYACIRD-------------------------- 323

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                       K ++ WV +    G  +    TD++D+     + ++++          
Sbjct: 324 -----------LKTLEDWVARATAQGHVAVDTETDSLDSVSGGLVGVSLALAPG------ 366

Query: 423 KVETIFIDLSVHTSQDSTGKNTL----------TKEILSYLKKFFENEHFLKIGHNIKYD 472
             E  +I L+ H   ++ G   +            E L  LK   E+   LKIG NIKYD
Sbjct: 367 --EACYIPLA-HVDPEAKGDGDMFGADPPRQIKMAEALKVLKPMLEDPAVLKIGQNIKYD 423

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
             V  ++ I +   +D ML+S+ L++G   H +  +++++L +   T K++  + K+   
Sbjct: 424 LSVFAQHKIHVHPIDDTMLISFALNAGIHGHGMDDLSERYLGHKPITFKDVAGTGKAQKS 483

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +++  +  E+A E+++V L+LW  L+P+L  E++  VYE LD+P+  V+++ME  G++
Sbjct: 484 FAQVALDKATEYAAEDADVTLRLWQALKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVK 543

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D+D+L ++SA+ ++ + +LE   ++ +G  FN+ SPKQLG+ILF ++  P G KTKTG 
Sbjct: 544 VDRDMLSRLSADFNQRMAALEAEAHEQAGRSFNIGSPKQLGEILFDEMNLPGGKKTKTGA 603

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           W T    LE +    + + + I++WR LSK++STY ++L   INK+T RVHT Y +A   
Sbjct: 604 WVTDGDVLEGLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGAQ 663

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++T+ G+KIR+AFI+     L+SADYSQIELRILAH+A I  L Q
Sbjct: 664 TGRLSSTDPNLQNIPVRTEEGRKIRQAFIAEEGNVLVSADYSQIELRILAHMADIPALKQ 723

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F++ LDIH M A+E+FGV IE + P +RR AK INF IIYGIS F L  QL IP  EA 
Sbjct: 724 AFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAINFGIIYGISGFGLGRQLGIPSGEAN 783

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YIK YF RFPGI +Y+++TK F R  G+V+T FGR+IH  +I S K   R+  ER AIN
Sbjct: 784 QYIKTYFERFPGIRQYMDETKEFARATGFVKTAFGRKIHLPDIKS-KGPARSFAERQAIN 842

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI +RAMI + ++L +  L  +MLLQ+HDELVFE PE+E     +++  +M 
Sbjct: 843 APIQGSAADIIKRAMIRMPEALAEAGLKAQMLLQVHDELVFECPEKEAEKLIKLVQKTMA 902

Query: 950 KACLPKINLRVPLKV 964
            A  P + L VPL V
Sbjct: 903 AADGPSLRLSVPLVV 917


>gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510]
 gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510]
          Length = 972

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/990 (41%), Positives = 606/990 (61%), Gaps = 69/990 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVDGS FI+RAF+A P+L+R  DG PVNA+ GF NML KLL +++ E++A    V+FD
Sbjct: 28  LYLVDGSGFIFRAFHALPMLTRP-DGTPVNAVLGFSNMLLKLLADAKAEAVA----VVFD 82

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              + FRNE YPDYKA+RP+ PE L PQ  L+R AT+AF +P +E++G+EADD+IATY  
Sbjct: 83  SKRLNFRNEFYPDYKAHRPEPPEELKPQFALIREATEAFCLPCLELEGYEADDLIATYAR 142

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +A++ G  VTI+S+DKDLMQLV P   ++D +K + I  + V +K+G+PPEK+V +QAL 
Sbjct: 143 LAQEAGRPVTIVSSDKDLMQLVRPGIGMFDPMKNKAIGPDEVFEKFGVPPEKVVDVQALA 202

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG+PGIG KTAA L+ EYG+LE +L NA +IKQ  RR+ ++E+AE AR+SR+L
Sbjct: 203 GDSVDNVPGVPGIGVKTAAQLITEYGDLEALLANADKIKQPARRQKLIEFAEQARISRRL 262

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L    P   PL+ L + + +  +LI FLKA  F  +++RV                  
Sbjct: 263 VRLDDRAPPPKPLDELRVREPDHRKLIDFLKAQGFRSIVSRV------------------ 304

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                     E E+ +D  I     S+    TS   S   P+ +  +       +P+   
Sbjct: 305 ----------EMEMQKDGRIADGAGSAPVVTTSATPS-APPENVSTDGTADTQDHPVRKT 353

Query: 367 -------SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  + +   +++WV++    G  +    TD++    +  + +++ST      
Sbjct: 354 VLHVPEVRYELVQDADALRRWVERARETGRLAVDTETDSLTPATATLVGVSLSTEPGI-- 411

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTL------------TKEILSYLKKFFENEHFLKIGH 467
                   +I L+ H ++ S     L              E ++ LK   E+   LKIGH
Sbjct: 412 ------ACYIPLA-HKAEGSAAAGQLDFDAPPPPAQIPAAEAMAILKDVLEDPSVLKIGH 464

Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
           N K+D  +  R GI++   +D ML+SYVL+ G   H +  +A+  L+YT    KE+  + 
Sbjct: 465 NFKFDHQLFGRNGITVSPVDDSMLISYVLEGGSHGHGMDELAELHLAYTPIPFKEVCGTG 524

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K+ I  D++   +   +A E++++ L+LW LL+P+L+  +++ VYE LD+P++ VV+ ME
Sbjct: 525 KNQITFDRVPLDKALAYAAEDADITLRLWTLLKPRLVDSRMVTVYETLDRPLVPVVANME 584

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G++IDQ  L ++S ++S  L  +E+ ++ L+G+ FN+ SPKQLG+ILF  LK  +G K
Sbjct: 585 REGVRIDQQALARLSQDLSVRLAEIEKEVHALAGQSFNIGSPKQLGEILFDTLKLGTGKK 644

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            KTG + T +  LE++    + I + +L+WRQL+K+KSTY D+L   I+  T RVHT ++
Sbjct: 645 GKTGAYSTDSSVLEELAEQGHTIAQRVLDWRQLAKLKSTYTDALQEKISPVTGRVHTAFA 704

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
           LA+T TGRL+S +PNLQNIP++T+ G+KIRRAF++ P  KL+S DYSQIELR++A +A I
Sbjct: 705 LAATNTGRLSSTDPNLQNIPVRTEEGRKIRRAFVASPGHKLLSVDYSQIELRLVAEMADI 764

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F + LDIH   AA++FG+ + +++P +RR AK INF IIYGIS F L  QL I 
Sbjct: 765 QALKDAFRDGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYGISGFGLGRQLGIA 824

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA  +IK Y  RF  +  ++E TK F RQ+GYV T+FGRR +   I    ++ R   E
Sbjct: 825 PGEANAFIKTYLERFHELKVWMEATKAFARQHGYVATLFGRRCYMPGIQDKNAARRAFAE 884

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AINAPIQG+AADI +RAM  +  +L       +MLLQ+HDEL+FEVPE E+  A++I+
Sbjct: 885 RQAINAPIQGTAADIMKRAMNRMPDALAAAGSNARMLLQVHDELLFEVPEAEVDDAARIV 944

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ME A     +L VPL     + +NW+E
Sbjct: 945 REVMEGAA----HLGVPLVAEAGIGDNWEE 970


>gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
          Length = 964

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/988 (41%), Positives = 590/988 (59%), Gaps = 63/988 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+++D S++I+RA++A P L+RK DGLPV A+ G+CNMLWKLL++ + E   +H   +FD
Sbjct: 22  LWMIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGEDGPTHLVAVFD 81

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +   TFRN++Y  YKA+RP  PE L+PQ PLVR AT+AFG+  +E+ G+EADD+IATY  
Sbjct: 82  HSEKTFRNDLYDQYKAHRPPAPEDLVPQFPLVREATKAFGVHCVEMAGYEADDLIATYAC 141

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I+S+DKDLMQL+     +YD +K+ +++ E V +K+G+ P+K+V +QAL 
Sbjct: 142 QARDAGGEAVIVSSDKDLMQLIGDGVVMYDPMKDRRLEEEAVFEKFGVTPDKVVEVQALI 201

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++ +A+  RLSR+L
Sbjct: 202 GDSVDNVPGAPGIGPKTAAQLIHEYGDLDTLLARAGEIKQPKRRETLINFADQIRLSREL 261

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L  D PI  P++  ++ D +   L +FL+ +EF  L  RV                  
Sbjct: 262 VKLTCDAPIPEPIDDFLIRDPDPETLSAFLETMEFKSLARRVG----------------- 304

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                           D      + S+ + Q S   +  TP+    E       + I+ D
Sbjct: 305 ----------------DGKAPQKEGSAFTRQPSAPVA--TPRYGQTEVAAPTETHAIDRD 346

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  +   +D+ +W+ +    G   F   TD + + H+    ++++            E 
Sbjct: 347 RYECVQTLEDLDRWIARARAAGVVGFDTETDALSSTHAGLCGVSLAVGPN--------EA 398

Query: 427 IFIDLSVHTSQDSTGKNTLTKE---------------ILSYLKKFFENEHFLKIGHNIKY 471
            +I L+ H  + +        +                L+ LK   E+   LK+G NIKY
Sbjct: 399 CYIPLT-HEHEPTGDGGLDFGDGGDARPPLQQIDKPTALARLKDLLEDPSVLKVGQNIKY 457

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           D  V+ R G+ +   +D+ML+SYVL+ G   H +  +A+  L +     K +  + KS  
Sbjct: 458 DLAVMARRGVRVAPIDDVMLISYVLEGGLHGHGMDELARLHLGHEPIPFKSVAGTGKSQK 517

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
               +       +A E+++V L+L  LL+P+L  E L +VYE L++ M  V++ ME  G+
Sbjct: 518 SFKHVELKSAVCYAAEDADVTLRLHRLLKPRLAAEGLSNVYETLERGMPAVLADMERAGV 577

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D D L+ +S+   + +  LEE  + L+G  FN+ SP+Q+G+ILF ++  P G KT +G
Sbjct: 578 RVDPDRLRSLSSTFGQRMAELEEEAHKLAGRPFNVGSPRQIGEILFGEMNLPGGKKTASG 637

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T A  LE +    +P+ + IL+WRQLSK+K TY D+L   ++ +T RVHT Y LA+ 
Sbjct: 638 QWGTDASVLEDL-AQSHPLPRTILDWRQLSKLKGTYTDALVAAMDPQTNRVHTSYQLAAA 696

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRLAS +PNLQNIPI+T+ G++IR+AFI+ P   LISADYSQIELR+LAHI  I  L 
Sbjct: 697 TTGRLASSDPNLQNIPIRTETGRQIRQAFIASPGHVLISADYSQIELRLLAHIGDIPELK 756

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F++ LDIH   A+E+FGV +E +  + RR AK INF IIYGIS F LA QL I + EA
Sbjct: 757 RAFKSGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIIYGISAFGLAAQLGIDQGEA 816

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YIK YF RFPGI +Y+++TK  V++ G+V T+FGRRIH   I+S   + R   ERAAI
Sbjct: 817 GAYIKTYFERFPGIRDYMDRTKALVKEQGFVTTVFGRRIHIPAIHSKSGAERQFGERAAI 876

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L +  L T+MLLQ+HDELVFE PE E   A  +I   M
Sbjct: 877 NAPIQGAAADIIRRAMIRMPGALAEAGLQTRMLLQVHDELVFEAPEAEAERAVAVIRRIM 936

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A LP + L VPL V  K + NW + +
Sbjct: 937 EGAALPAVALSVPLDVEAKAAGNWDDAH 964


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/987 (41%), Positives = 591/987 (59%), Gaps = 80/987 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    H+ L+DGS FI+RAF+  P ++R  DG PVNA+ GF  ML KLL +S+ +    H
Sbjct: 1   MTAPRHVTLIDGSGFIFRAFHGLPPMTRP-DGTPVNAVYGFTTMLMKLLADSQSD----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD    TFR+EIYP+YKA+RP  P+ L+PQ PLVR AT+AF +PAIE++GFEADD+
Sbjct: 56  VAVIFDSSRKTFRSEIYPEYKAHRPPAPDELVPQFPLVREATRAFDLPAIELEGFEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IATY  +A + G +VTI+S+DKDLMQLV P   +YD +K   I    V +K+G+ P+K+V
Sbjct: 116 IATYARLAVEAGASVTIVSSDKDLMQLVGPGVDMYDPMKNRAIGEAEVREKFGVAPDKVV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GDS DN+PG+PGIG KTAA L++EYG+L+ +L  AS IKQ KRRE+++E+AE A
Sbjct: 176 DVQALCGDSSDNVPGVPGIGVKTAAQLIEEYGDLDTLLARASEIKQPKRRESLIEHAELA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+SR+LV LRTD P+ +PL  L ++     +L +F  A  F  L+ R+       A    
Sbjct: 236 RISRQLVRLRTDAPVPVPLADLDVKPPAPEKLAAFCAAQGFRSLMGRLNAKIPTTAPTAT 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             ++D  + E   +  + E D                                       
Sbjct: 296 RAIVDTASAEAPSLPPKVESD--------------------------------------- 316

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + +   + +WV +    G   F   T  +D   +K + ++++    +   
Sbjct: 317 -------YELVTDLAALDRWVAQASKAGLVGFDTETTGLDPLRAKLVGVSLALAPGR--- 366

Query: 421 SFKVETIFIDLSVHTSQDSTG-----------KNTLTKEILSYLKKFFENEHFLKIGHNI 469
                  +I + +H+S ++ G           K     +IL+ LK    +   LK+GHNI
Sbjct: 367 -----ACYIPV-MHSSGEAQGDLLGGPSADAPKLIPAADILARLKPLLADPAVLKVGHNI 420

Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
           KYD  V+   G++++ F+D ML+SYVLD     H +  +    L +   +  E+  S ++
Sbjct: 421 KYDMQVMAGLGLAIQSFDDTMLLSYVLDGASHGHGLDELCLLHLGHRNISFAEVCGSGRN 480

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            +  D++   +   +A E++++ L+L  LL+P+L++E+++ VYE L++P++ V++ ME  
Sbjct: 481 QVTFDRVPLDKACAYAAEDADMTLRLHGLLKPRLLLERMVSVYETLERPLVPVIAAMERD 540

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           GI++D+  L  +S +  + L  LE  +  L+ GE FNL SP+QLG +LF  L  P G KT
Sbjct: 541 GIKVDRPQLMALSEDFGRRLTELETEVVALNNGEAFNLGSPQQLGKVLFETLNLPGGKKT 600

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTGQW T A  LE +    +P+   +L+WRQLSK+K TY D+L   IN  T RVHT Y+L
Sbjct: 601 KTGQWATGADVLEDL-AHLHPLPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYAL 659

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A+T TGRL+S +PNLQNIPI+T+ G+KIR AF++ P K+LISADYSQIELR++AH+A+I 
Sbjct: 660 AATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKRLISADYSQIELRLVAHVAEIE 719

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F +  DIH + A+++FGV ++ +   +RR AK INF IIYGISPF LA QL IP+
Sbjct: 720 GLRDAFADGADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGISPFGLAAQLGIPQ 779

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI+ YF R+P I  ++E+TK   R+ G+V T+FGR++    I     ++R   ER
Sbjct: 780 GEAKAYIEAYFARYPEIRTFMERTKEEAREKGFVTTLFGRKVFTPGIKDKNGAMRAFAER 839

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAIN PIQG AADI +RAMI +  +L    L  ++LLQ+HDELV E PE+E     +++ 
Sbjct: 840 AAINGPIQGGAADIIKRAMIRLPAALVAEGLKARLLLQVHDELVLEAPEDETEATVRVVK 899

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             ME A      L VPL V   ++++W
Sbjct: 900 RVMEAAA----TLSVPLLVEAGIADSW 922


>gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814]
 gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814]
          Length = 956

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1003 (41%), Positives = 596/1003 (59%), Gaps = 84/1003 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK---ESI 57
           + +++HL+LVD S +I+RAF+A P L+RK DGLPV A++GFCNML+KLL  S++      
Sbjct: 7   LNEDSHLYLVDASGYIFRAFHALPPLTRKSDGLPVGAVSGFCNMLYKLLAESKEVTGNGK 66

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           A+HFA IFD  + TFRN++ P YKA RP  PE L PQ PLVR A  AFG PA+E+  +EA
Sbjct: 67  ATHFACIFDASSKTFRNDLDPRYKAQRPPTPEDLAPQFPLVRRAAIAFGTPAVELDNYEA 126

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IA Y  IAE++G  VTIIS+DKDLMQLV+    + DT+K+  +  E V+ K+G+ P+
Sbjct: 127 DDLIAAYARIAEEKGAKVTIISSDKDLMQLVTDKVSMMDTMKDRHLSFEAVMDKFGVAPD 186

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-INASRIKQKK-------- 228
           ++  +QAL GDS+DN+PG+PGIG KTAA L+ E+G+LE +L  ++  +  KK        
Sbjct: 187 RVTHVQALAGDSVDNVPGVPGIGLKTAAQLINEFGDLEALLKFSSEHVPDKKNKAHELLT 246

Query: 229 --RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             R EN++E+A+ AR+S KLV L    P+ + +E   + +    +L+ FL  +EF  +  
Sbjct: 247 FKRHENLVEFADDARISFKLVTLDDHTPVPVAIEEFGVCEPELEQLVPFLDEMEFRTITR 306

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           RV       A   EPV               T    + TI  ++ +++ D +        
Sbjct: 307 RVVQALGDGA---EPVA--------------TPASGEATIPVTETNNVFDTSQ------- 342

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
                                YT ++   D+ +W+++ + +G       TD +DA  +  
Sbjct: 343 ---------------------YTTLIKPDDLVEWMRRAQAVGVIGVDTETDGLDAIGANL 381

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQ-----DSTGKNTLTKEILSYLKKFFENEH 461
           + ++++ L   D         +I L  HT       D   +    K  L  LK   E+  
Sbjct: 382 VGVSLA-LGPND-------ACYIPLG-HTGDGDLLGDGAPEQMDMKLALGILKPMLEDPT 432

Query: 462 FLKIGHNIKYDKLVLHRYG-------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
            LK+G N KYD  V HR G       I     +D ML+S  L++G+ +H +  +++    
Sbjct: 433 ILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAALEAGQHNHGMDVLSELHFD 492

Query: 515 YTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +     KE+  + K  I  DK+   +  ++A E+++V L+LW LL+P+L  E +  +YE 
Sbjct: 493 HKPIPFKEVAGTGKKQITFDKVPVPEATKYAAEDADVTLRLWALLKPRLSAEGMATLYET 552

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +++PM+ VV+QME  GI ++++ L ++S + ++ +   E   Y+L+G +FN+ SPKQLG+
Sbjct: 553 IERPMVPVVAQMERAGIFVERETLSRLSGDFAQRMAQYEAEAYELAGREFNMGSPKQLGE 612

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF +++ P G KTKTG W T A  LE +    + + K +L WR LSK+KSTY D+L   
Sbjct: 613 ILFGEMELPGGKKTKTGAWATGADALEDLAAEGHELPKILLGWRSLSKLKSTYTDALGEC 672

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN  T RVHT ++L    TGRL+S +PNLQNIPI+T+ G+KIR AF++     LI+ADYS
Sbjct: 673 INAETGRVHTSFNLVGAQTGRLSSSDPNLQNIPIRTEEGRKIRAAFVAQEGNVLIAADYS 732

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAHI  I  L   F N LDIH M A+E+FGV IE + P +RR AK INF IIYG
Sbjct: 733 QIELRLLAHIGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAINFGIIYG 792

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           IS F LA QL IPR EA++YIK Y  +FPGI +Y+++ K F R+ GYVET FGRRI    
Sbjct: 793 ISAFGLARQLGIPRGEASEYIKAYNAKFPGILKYMDEMKAFAREKGYVETAFGRRIWMKG 852

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           IN  K   R   ER AINAP+QGSAADI +RAM+ +  +LE   L  KMLLQ+HDEL+FE
Sbjct: 853 ING-KGPERGFAERQAINAPLQGSAADIIKRAMVKMPAALEKSGLQAKMLLQVHDELIFE 911

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            P+ E     +++   ME A  P ++L VPL V  + +++W E
Sbjct: 912 APKAEAEKTIKLVKKIMETATFPVMDLSVPLLVEAEAAHSWNE 954


>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
 gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
          Length = 967

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/980 (42%), Positives = 593/980 (60%), Gaps = 50/980 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKLL++ + ++  +H AVI+D
Sbjct: 28  LFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGDT-PTHLAVIWD 86

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +   TFRN +Y  YKA+RP  PE L+PQ PLVR AT AFG+PAIE+ G+EADD+IA Y  
Sbjct: 87  HSEKTFRNALYDQYKAHRPPPPEDLIPQFPLVREATLAFGVPAIELPGYEADDLIAAYAC 146

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I+S+DKDLMQLV     +YD +K  +I+ E V +K+G+ PEK+V +QAL 
Sbjct: 147 KARDIGGEAIIVSSDKDLMQLVGDGVSMYDPMKGVRIEREQVFEKFGVYPEKVVDVQALC 206

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++ +A+  RLSR L
Sbjct: 207 GDSVDNVPGAPGIGIKTAAQLITEYGDLDTLLARAGEIKQPKRRETLINFADQIRLSRAL 266

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L  D P+  PL+ L + + +   L +FL+ +EF  L  RV    D  AA         
Sbjct: 267 VKLDCDTPLPQPLDALTVREPDKEALAAFLEQMEFRSLARRVG---DGSAA--------- 314

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                   A    +DR      +   S+S   +   +   P          +    I++ 
Sbjct: 315 --------ATPGTLDRPAAPPKAPVVSVSYMGAAARAAAHP----------VEPVKIDHA 356

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  + +   ++ WV K    G  +F   TD + +  +    ++++            E 
Sbjct: 357 AYACVRDLATLKAWVAKATDKGLVAFDTETDALSSATAGLCGVSLAIAPG--------EA 408

Query: 427 IFIDLSVHTSQDSTG-------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +I +S     D          +     ++++ LK   E+   LK+  N KYD  VL R+
Sbjct: 409 CYIPISHCEKADGLAFEAPADIEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH 468

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           GI +   ED ML+SYVL++G   H +  +++  L +     K++  S K  I    ++  
Sbjct: 469 GIQVAPIEDTMLISYVLEAGLHGHGMDELSELHLGHKPIPFKQVAGSGKGQISFKHVALP 528

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E+++V L+L+  L+P+L    L  VYE L++PM  V++ ME  G+++D + L+
Sbjct: 529 EATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALR 588

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S E S  +   E    +L G  FNL SPKQ+GD+LF +++   G KT TGQW T +  
Sbjct: 589 LLSNEFSLRMAQFEARAQELVGRPFNLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDV 648

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   ++ + + +L+WRQLSK+K TY ++L   I   T RVHT Y+LA+T TGRL+S 
Sbjct: 649 LESLAL-EHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALAATTTGRLSSS 707

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+ G+KIR+AF++ P   LISADYSQIELR+LAHI  I  L + F+  LD
Sbjct: 708 DPNLQNIPVRTEEGRKIRKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLD 767

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH M A+E+F   IE + P +RR AK INF I+YGIS F LA QL I + EA  YIK YF
Sbjct: 768 IHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYF 827

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFPGI  Y++ TK FVR++GYV TIFGR+I+  +I +  ++ R   ERAAINAPIQG+A
Sbjct: 828 ERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAA 887

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ RRAMI +  +LE   L+T+MLLQ+HDELVFE PE E   A  ++   MEKA  P +
Sbjct: 888 ADVMRRAMIRMPVALEAAGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAV 947

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L +PL V  + ++NW E +
Sbjct: 948 ALSIPLTVEARAASNWDEAH 967


>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
 gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
          Length = 982

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/980 (42%), Positives = 593/980 (60%), Gaps = 50/980 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKLL++ + ++  +H AVI+D
Sbjct: 43  LFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGDT-PTHLAVIWD 101

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +   TFRN +Y  YKA+RP  PE L+PQ PLVR AT AFG+PAIE+ G+EADD+IA Y  
Sbjct: 102 HSEKTFRNALYDQYKAHRPPPPEDLIPQFPLVREATLAFGVPAIELPGYEADDLIAAYAC 161

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I+S+DKDLMQLV     +YD +K  +I+ E V +K+G+ PEK+V +QAL 
Sbjct: 162 KARDIGGEAIIVSSDKDLMQLVGDGVSMYDPMKGVRIEREQVFEKFGVYPEKVVDVQALC 221

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++ +A+  RLSR L
Sbjct: 222 GDSVDNVPGAPGIGIKTAAQLITEYGDLDTLLARAGEIKQPKRRETLINFADQIRLSRAL 281

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L  D P+  PL+ L + + +   L +FL+ +EF  L  RV    D  AA         
Sbjct: 282 VKLDCDTPLPQPLDALTVREPDKEALAAFLEQMEFRSLARRVG---DGSAA--------- 329

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                   A    +DR      +   S+S   +   +   P          +    I++ 
Sbjct: 330 --------ATPGTLDRPAAPPKAPVVSVSYMGAAARAAAHP----------VEPVKIDHA 371

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  + +   ++ WV K    G  +F   TD + +  +    ++++            E 
Sbjct: 372 AYACVRDLATLKAWVAKATDKGLVAFDTETDALSSATAGLCGVSLAIAPG--------EA 423

Query: 427 IFIDLSVHTSQDSTG-------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +I +S     D          +     ++++ LK   E+   LK+  N KYD  VL R+
Sbjct: 424 CYIPISHCEKADGLAFEAPADIEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH 483

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           GI +   ED ML+SYVL++G   H +  +++  L +     K++  S K  I    ++  
Sbjct: 484 GIQVAPIEDTMLISYVLEAGLHGHGMDELSELHLGHKPIPFKQVAGSGKGQISFKHVALP 543

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E+++V L+L+  L+P+L    L  VYE L++PM  V++ ME  G+++D + L+
Sbjct: 544 EATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALR 603

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S E S  +   E    +L G  FNL SPKQ+GD+LF +++   G KT TGQW T +  
Sbjct: 604 LLSNEFSLRMAQFEARAQELVGRPFNLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDV 663

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   ++ + + +L+WRQLSK+K TY ++L   I   T RVHT Y+LA+T TGRL+S 
Sbjct: 664 LESLAL-EHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALAATTTGRLSSS 722

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+ G+KIR+AF++ P   LISADYSQIELR+LAHI  I  L + F+  LD
Sbjct: 723 DPNLQNIPVRTEEGRKIRKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLD 782

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH M A+E+F   IE + P +RR AK INF I+YGIS F LA QL I + EA  YIK YF
Sbjct: 783 IHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYF 842

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFPGI  Y++ TK FVR++GYV TIFGR+I+  +I +  ++ R   ERAAINAPIQG+A
Sbjct: 843 ERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAA 902

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ RRAMI +  +LE   L+T+MLLQ+HDELVFE PE E   A  ++   MEKA  P +
Sbjct: 903 ADVMRRAMIRMPVALEAAGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAV 962

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L +PL V  + ++NW E +
Sbjct: 963 ALSIPLTVEARAASNWDEAH 982


>gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149]
 gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149]
          Length = 933

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/981 (41%), Positives = 592/981 (60%), Gaps = 69/981 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + ++ +      +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLHRYVEGNTGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +G+EADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDLYKANREAMPEDLRPQIPLTRRATEAFNIACKEKEGYEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A K G   TIIS+DKDLMQLV     + D +K ++ID + V +K+G+ PE++V +
Sbjct: 127 TLAVQARKAGGTCTIISSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVYPERVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+++L  A  IKQ KR++ ++++A+  RL
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDSLLERAGEIKQPKRKQTLIDHADQIRL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV+L    P+   LE L + D N  +L+ FL  +EF  L  R+A     +   I   
Sbjct: 247 SRRLVLLDEATPLDFTLEDLEVRDPNPDQLMPFLAEMEFRTLTKRIADQLKVEMPEIN-- 304

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
               +T  N   A+E                                        ++  P
Sbjct: 305 ----DTPANAPAALE----------------------------------------IADVP 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   Y+++ + K +Q+W+ ++   G  +    T  ++   +  + +++     K     
Sbjct: 321 FDKAGYSQVDSAKALQEWIDQIYERGYVAVDTETTGLNDMTADLVGVSLCVEPGK----- 375

Query: 423 KVETIFIDL--SVHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474
                +I L     +S D  G + L +        L  LK   E+E  LKIG N+KYD  
Sbjct: 376 ---ACYIPLIHKAASSDDLFGSDDLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAK 432

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           +  + GI++   +D MLMSY +  G   H + ++++++L +T    K +L S KS+I  D
Sbjct: 433 IFAQVGITVAPIDDTMLMSYAMHGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFD 492

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+  +    +A E+++V L+LW   +P L   ++  VYE L++PM+ V++ ME  GI++D
Sbjct: 493 KVPLNDAVPYAAEDADVTLRLWQQFKPALHRAQVTRVYETLERPMVAVLADMERAGIKVD 552

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +D L ++S   S+ + +LE+ IY L G KFN+ SPKQLG+ILF ++    G K KTG + 
Sbjct: 553 RDTLSRMSNAFSQKMAALEDEIYTLVGRKFNVGSPKQLGEILFDEMGLQGGKKGKTGAYA 612

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE +   ++ + + IL+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TG
Sbjct: 613 TGADVLEDLAT-EHELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTG 671

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RLAS +PNLQNIPI+++ G++IR AF++   K L++ DYSQIELRILAHIA I  L   F
Sbjct: 672 RLASTDPNLQNIPIRSEEGRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKAAF 731

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++  DIH M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPRSEA  +
Sbjct: 732 DDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGF 791

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF RFPGI  Y++ TK F +++GYVET+FGRRIH   I + K        RAAINAP
Sbjct: 792 IDRYFERFPGIRTYMDDTKAFAKEHGYVETLFGRRIHTPNIGA-KGPQAGFAARAAINAP 850

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AAD+ RRAMI +  ++ D  L  KMLLQ+HDEL+FEV +             ME A
Sbjct: 851 IQGTAADVIRRAMIRMPAAIVD--LPAKMLLQVHDELLFEVDQGSQGALIDAARSVMESA 908

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
             P ++L V L V+     NW
Sbjct: 909 ADPVVHLDVKLTVDAGEGPNW 929


>gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217]
 gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217]
          Length = 936

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/984 (40%), Positives = 599/984 (60%), Gaps = 68/984 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGSSFI+RA++A P L+RK DGLP+ A++GFCNML + ++ +      +H A
Sbjct: 7   KGCHLHLIDGSSFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEGNNGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++YP+YKANR  +PE L PQ+PL R AT+AF I   EI+GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDLYPEYKANREAMPEDLRPQIPLTREATRAFNIACEEIEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  VTIIS+DKDLMQLV     + D +K   ID++ V +K+G+ P+++V +
Sbjct: 127 TLACQARDLGGRVTIISSDKDLMQLVGNGVEMLDAMKNRLIDVDGVREKFGVTPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRR+ ++E  +   +
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEALLDRAGEIKQPKRRDTLIEKRDQIEM 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L + D +   L+ FL  +EF  L  R+A     DA  I   
Sbjct: 247 SKRLVQLDCNTPLEFTLDDLEVRDPDPEVLLCFLAQMEFRTLSKRIADALGKDAPTI--- 303

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                                    E  PQ+   E  Q ++ +P
Sbjct: 304 ----------------------------------------PEPKPQQAADEG-QSVADWP 322

Query: 363 -INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I  ++Y ++ + K +  W+  + + G  +    T +++   +  + I+++    +    
Sbjct: 323 AIEPETYERVSDQKSLDAWIAAIRSQGYVAVDTETTSLNEMQADLVGISLAIAPGR---- 378

Query: 422 FKVETIFIDLS--VHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDK 473
                 +I L+     + D  G + + +      + L+ LK   E+   LKIG N+KYD 
Sbjct: 379 ----ACYIPLTHKDGAADDLFGSDKMAEGQMPVADALAALKPVLEDHAILKIGQNMKYDA 434

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
            +    GI++   +D MLMSY L +G   H + ++++++L +T    K +L S K+++  
Sbjct: 435 KIFAARGITVEPIDDTMLMSYALHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVTF 494

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D++   +  ++A E++++ L+LWL  +P+L   ++  VYE L++P++ V++QME  G+++
Sbjct: 495 DRVPVDEAVKYAAEDADITLRLWLTFKPQLHRARVTTVYETLERPLVPVLAQMERYGVKV 554

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D+  L+ +S + ++ + +LE  I++L+G  FN+ SPKQLG+ILF ++    G K KTG +
Sbjct: 555 DRATLRAMSGKFAQKMAALESEIHELAGRSFNVGSPKQLGEILFDEMGLSGGEKGKTGAY 614

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A  LE +   ++ +   +L+WRQLSK+KSTY D+L +HI+  T RVHT Y  A   T
Sbjct: 615 ATGADVLEDLAT-EHELPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYVQAGANT 673

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS +PNLQNIP++++ G++IR AF++    +L+S DYSQIELRILAH+A+I  L Q 
Sbjct: 674 GRLASTDPNLQNIPVRSEEGRRIREAFVAASGHRLVSLDYSQIELRILAHVAEIETLKQA 733

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPRSEA  
Sbjct: 734 FREGHDIHAMTASEMFNVPLDQMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQG 793

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF RFPGI +Y++ T  F +++GYV+T+FGR+IH  EI S K        RAAINA
Sbjct: 794 FIDRYFERFPGIKDYMDATVAFAKEHGYVQTLFGRKIHTPEI-SAKGPRAGFARRAAINA 852

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI RRAMI +  ++E   L  KMLLQ+HDEL+FEV EE      +I    M+ 
Sbjct: 853 PIQGSAADIIRRAMIRMPDAIE--GLPCKMLLQVHDELIFEVAEEATDRLIEIARDVMQG 910

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A  P ++L VPL V+     NW E
Sbjct: 911 AASPAVHLDVPLVVDAGQGVNWAE 934


>gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199]
 gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199]
          Length = 943

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/994 (41%), Positives = 594/994 (59%), Gaps = 96/994 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++HL+LVDGS +I+RA++A P ++R  DG PVNA+ GF +ML +L+ +      A H AV
Sbjct: 21  QSHLYLVDGSGYIFRAYHALPPMNRP-DGTPVNAVFGFSSMLVRLIDDLD----ADHVAV 75

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRNEIYP+YKA RP+ PE L+PQ  L+R AT+AF +P IE+ GFEADD+IAT
Sbjct: 76  IFDAGRTTFRNEIYPEYKAQRPEAPEDLVPQFSLIRDATRAFNVPCIEMDGFEADDLIAT 135

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           Y  +A + G+ VT++S+DKDLMQLV     ++D +K   I    VI+K+G+PPEK+V +Q
Sbjct: 136 YARLASERGWRVTVVSSDKDLMQLVKDGIDMFDPMKNRPIGRAEVIEKFGVPPEKVVDVQ 195

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           +L GDS+DN+PG+PGIG KTAA L+ EYG+LE++L  A  IKQ KRREN++EYAE AR+S
Sbjct: 196 SLAGDSVDNVPGVPGIGIKTAAQLIDEYGDLESLLARAGEIKQPKRRENLIEYAEKARIS 255

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           ++LV LR DV ++  LE L +   +   ++ FLK   F +L+ R  +       + E V 
Sbjct: 256 KQLVTLRDDVEVSEALEALAVRHIDPAMVLPFLKEQGFKRLVARFESEEVQAGGSSETVA 315

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           +    TE  G A   E+ +D                                        
Sbjct: 316 I----TEPAGEAAGYELVQDIAA------------------------------------- 334

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                        +++W+   + +G+ +F   T ++D   +  + ++++    K      
Sbjct: 335 -------------LERWIVAAQDLGTVAFDTETTSLDCMRADLVGVSLAVAPGK------ 375

Query: 424 VETIFIDLSVHTSQDSTG-------KNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471
               +I L  H  + + G            K+I     ++ LK   EN   LKI HN KY
Sbjct: 376 --ACYIPLR-HVGRQAQGDLLGAGPAEEAPKQIPFDTAMARLKDLLENPAVLKIAHNAKY 432

Query: 472 DKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525
           D LVL R    GI++   +D M +SYVL+ G   H +  +A   L +T    +E+    K
Sbjct: 433 DALVLSRPKNGGITVAPIDDTMCLSYVLEGGLHGHGLDELATLHLGHTNIKFEEVCGKGK 492

Query: 526 SSI-----PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           + I     PIDK        +A E+++V  +L  LL+P+L+ E++  VYE L++ +I V+
Sbjct: 493 TQIGFAEAPIDKAC-----AYAAEDADVTFRLHALLKPRLVPERMTTVYETLERALIPVL 547

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             ME  GI++D  +L+ +SA+ +K L++LE  I++ +GE FN+ SPKQLG+ILF K+   
Sbjct: 548 VGMERNGIKVDPTILRDMSADFAKRLVTLEGEIHEQAGEPFNVGSPKQLGEILFDKMGLA 607

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
            G K KTG + T A  LE +    +   + +L+WRQ++K+KSTY D+L   IN  T RVH
Sbjct: 608 GGKKGKTGAYGTGADVLETLAAEGSDFARKVLDWRQIAKLKSTYTDALVETINAETGRVH 667

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T YS+    TGRL+S +PNLQNIPI+T+ G+KIR AF++ P   L+S DYSQIELR++A 
Sbjct: 668 TSYSMVGAATGRLSSNDPNLQNIPIRTEEGRKIRTAFVAEPGNVLLSVDYSQIELRLVAD 727

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           IA I  L + F + +DIH   A+E+FGV + +++P +RR AK INF IIYGIS F LA Q
Sbjct: 728 IAGIESLRKAFLDGIDIHAQTASEVFGVPLSEMTPDIRRKAKAINFGIIYGISGFGLARQ 787

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L   ++EA  YI  YF RFPGI +Y+ + K F R++G+VET FGR++H   I     ++R
Sbjct: 788 LSTSQAEAQAYINAYFERFPGIRDYMTEMKTFAREHGFVETKFGRKVHIQAIRDKNPAMR 847

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           N  ERAAINAPIQG+AAD+ +RAM+ +  +L+  +   +MLLQ+HDEL+FEVPE+++   
Sbjct: 848 NFGERAAINAPIQGTAADVIKRAMVRLPVALDKAQSKARMLLQVHDELLFEVPEDDVEAT 907

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           S ++   ME A  P++NL VPL        +W E
Sbjct: 908 SALVREVMEGAAAPQLNLSVPLIAEAGWGKSWSE 941


>gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM]
 gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM]
          Length = 933

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/984 (40%), Positives = 600/984 (60%), Gaps = 71/984 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + + +       +H A
Sbjct: 7   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYISDDHGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI+GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDLYGLYKANREAMPEDLRPQMPLTREATRAFNIACQEIEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  VTIIS+DKDLMQLV     + D +K  +ID+E V +K+G+ P+++V +
Sbjct: 127 TLACQARDLGGRVTIISSDKDLMQLVGGGVEMLDAMKNRRIDVEGVEEKFGVGPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++E+     L
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLETLLDRAEEIKQPKRRQTLIEHRAQIEL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L + D +   L+SFL  +EF  L  R+A             
Sbjct: 247 SKRLVQLDCNTPLDFGLDDLEVRDPDPETLLSFLSEMEFRTLSTRIA------------- 293

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                    K +A+E  +  D     S+ S+                         + +P
Sbjct: 294 ---------KALAVEAPVIPDVAPAASEDSA-------------------------ADWP 319

Query: 363 -INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I  ++Y ++ +   +Q W+ ++   G  +    T +++   ++ + I+++         
Sbjct: 320 AIAPEAYERVSDMAALQVWIDRILARGYVAIDTETTSLNEMQAELVGISLAVEPG----- 374

Query: 422 FKVETIFIDLSVH--TSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDK 473
              +  +I L      S D  G + L +       +LS L+   E+   LKIG N+KYD 
Sbjct: 375 ---QACYIPLGHREGASDDLFGSDALAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDA 431

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
            +    G+++   +D MLMSY L+SG  +H + ++++++L++     K +L + KS++  
Sbjct: 432 KIFAGLGLTIAPIDDTMLMSYALNSGIHNHGMDALSERYLAHNPIPIKTLLGTGKSAVTF 491

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           DK+   +  ++A E++++ L+LW + +P+L  +++  VYE L++P++ V+++ME  GI +
Sbjct: 492 DKVPIDEAVKYAAEDADITLRLWHMFKPQLHQKQVTTVYETLERPLVPVLARMERHGILV 551

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D+D+L ++S   ++ +  LE  I++L+G  FN+ SPKQLG+ILF ++    G K KTG +
Sbjct: 552 DRDVLSRMSNAFAQKMGGLEAEIHELAGRSFNVGSPKQLGEILFDEMALEGGKKGKTGAY 611

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A  LE +   ++ +   +L+WRQLSK+KSTY D+L +HI+  T RVHT Y      T
Sbjct: 612 ATGADVLEDLAT-EHELPARVLDWRQLSKLKSTYTDALQDHIDPNTGRVHTSYVQTGAST 670

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS +PNLQNIP++++ G++IR AF++   K+L+S DYSQIELRILAH+A I  L Q 
Sbjct: 671 GRLASTDPNLQNIPVRSEEGRRIREAFVADAGKRLVSLDYSQIELRILAHVAGIDALKQA 730

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F + LDIH M A+E+FGV +++++  +RR AK INF +IYGIS F LA  LRIPR+EA  
Sbjct: 731 FRDGLDIHAMTASEMFGVPLDEMTSDVRRRAKAINFGVIYGISGFGLARNLRIPRAEAQG 790

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF RFPGI  Y+++T  F + +GYV+T+FGRRIH  EI + K       +RAAINA
Sbjct: 791 FIDRYFERFPGIRAYMDETVEFAKAHGYVQTLFGRRIHTPEIAA-KGPRAGFAKRAAINA 849

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI RRAMI + +++ D  L  KMLLQ+HDEL+FE  E+ +          ME 
Sbjct: 850 PIQGTAADIIRRAMIRMPEAIAD--LPCKMLLQVHDELLFEAEEDAVDAVITAAREVMEG 907

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A  P ++L VPL V+     NW E
Sbjct: 908 AADPAVHLDVPLTVDAGSGMNWAE 931


>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
 gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
          Length = 938

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/989 (41%), Positives = 604/989 (61%), Gaps = 76/989 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQ-NSRKESIASHF 61
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + +  NS      +H 
Sbjct: 7   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYIDGNSASSDAPTHI 66

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI+G+EADDII
Sbjct: 67  AVIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRRATEAFNIACKEIEGYEADDII 126

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    A   G  VTIIS+DKDLMQLV     ++D +K  +ID+E V +K+G+ P+++V 
Sbjct: 127 ATLACQARDLGGRVTIISSDKDLMQLVGDGVEMFDAMKNRRIDVEGVEEKFGVGPDRVVD 186

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  I Q KRR+ ++E+     
Sbjct: 187 VQALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAEDIPQPKRRQTLIEHRAQIE 246

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+KLV L  + P+   L+ L L D +   L++FL  +EF  L  R+A +   +     P
Sbjct: 247 LSKKLVQLDCETPLDFTLDDLELRDPDPDTLLAFLAEMEFRTLSKRIADSLGAEP----P 302

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V+ D N       A  TE D                                       +
Sbjct: 303 VIPDTNPAG----ANPTEGD-----------------------------------AAPDW 323

Query: 362 P-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           P I+ DSY  + + + ++ W+  ++  G  +    T +++   +  + I+++    +   
Sbjct: 324 PAIDPDSYEHVRDMEALEAWIAHIQARGLVAVDTETTSLNEMQAALVGISLAVEPGR--- 380

Query: 421 SFKVETIFIDLSVHT--------SQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKY 471
                  +I L  HT        S D+  +  L  + +L  LK   E++  LKIG N+KY
Sbjct: 381 -----ACYIPLR-HTEGASGDLFSSDALAEGQLDLDAVLGALKPMLEDDAILKIGQNMKY 434

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           D  +  R+GI +  F+D MLMSY L++G   H + ++++++LS+     KE+L + KS++
Sbjct: 435 DAKIFARHGIRVAPFDDTMLMSYALNAGIHGHGMDTLSERYLSHQPIPIKELLGTGKSAV 494

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D++  +   ++A E++++ L+LW + +P+L  EK+  VYE L++P+  V++QME  GI
Sbjct: 495 TFDRVPVADAVKYAAEDADITLRLWHVFKPQLHREKVTTVYETLERPLSPVLAQMERNGI 554

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D++ L ++S + ++ +  LEE I++L+G KFN+ SPKQLG+ILF ++    G + KTG
Sbjct: 555 KVDRETLSRMSGKFAQKMAQLEEEIHELAGRKFNVGSPKQLGEILFDEMGLDGGKRGKTG 614

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T A  LE +   ++ +   +L+WR LSK+KSTY D+L +HI+  T RVHT Y     
Sbjct: 615 AYATGADVLEDLAT-EHDLPARVLDWRALSKLKSTYTDALQDHIDPDTGRVHTSYVQTGA 673

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRLAS +PNLQNIP++++ G++IR AF++ P   L+S DYSQIELRILAHIA I  L 
Sbjct: 674 TTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGNVLVSLDYSQIELRILAHIADIDALR 733

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F +  DIH M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR EA
Sbjct: 734 QAFRDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEA 793

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I RYF RFPGI  Y++KT +F +++G+V+T+F R+IH  EI S K        RAAI
Sbjct: 794 QGFIDRYFERFPGIKTYMDKTVDFAKEHGFVQTLFNRKIHTPEI-SAKGPRAGFARRAAI 852

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS- 947
           NAPIQG+AADI RRAMI +  ++E   +  KMLLQ+HDEL+FEV   E   A  +I  + 
Sbjct: 853 NAPIQGTAADIIRRAMIRMPAAIE--GMPAKMLLQVHDELIFEV---EAGAADALIATAR 907

Query: 948 --MEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME A  P + + VPL V+     NW E
Sbjct: 908 DVMEAAADPAVKIDVPLVVDAGQGANWAE 936


>gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
 gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
          Length = 936

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/982 (40%), Positives = 589/982 (59%), Gaps = 65/982 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++     +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+   +FRN++Y  YKANRP  PE L PQ PL R AT+AF I   E++G+EADDIIA
Sbjct: 68  VIFDHSGKSFRNDLYDLYKANRPPAPEDLRPQFPLTRDATRAFNIACKEVEGYEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + A   G   TIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +
Sbjct: 128 TLAHQARAAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKRIDTDGVHEKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++E  +   L
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAEEIKQPKRRQTLIEKRDQIEL 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L   + +   ++ L +++     L++FL  +EF  L  R+A     +A  I   
Sbjct: 248 SKQLVQLDCAMELDFTIDDLEVQEPEAETLLTFLAEMEFRTLTKRMADQLGLEAPAIPEA 307

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                T+                                 +E TP +            P
Sbjct: 308 PAQQGTS---------------------------------TEVTPPEAV----------P 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + + Y  + + +++  WV ++   G  +    T  +D      + I++           
Sbjct: 325 FDAEKYQCVTSAEELAPWVAQIRERGYVAVDTETTGLDEMVVDLVGISLCVEPG------ 378

Query: 423 KVETIFIDLSVHTSQDST-GKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLV 475
             E  +I L+     D   G   L +      + L  LK   E+   LKIG N+KYD  +
Sbjct: 379 --EACYIPLTHKVGGDDLFGGEGLAEGQMPLDQALEMLKPVLEDPAILKIGQNMKYDAKI 436

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
           LHRYG  +   +D MLMSY L +G   H + ++++++L +     K +L S KS+I  D+
Sbjct: 437 LHRYGADVAPIDDTMLMSYALHAGLHGHGMDTLSERYLDHKPIPIKPLLGSGKSAITFDR 496

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +    +A E++++ L+LW L +P+L  E++  VYE L++P++ V++QME  GI++D+
Sbjct: 497 VPIANAVPYAAEDADITLRLWQLFKPQLHQEQVTTVYETLERPLVPVLAQMERHGIKVDR 556

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L ++S   ++ +  LE  I++++G  FN+ SPKQLG+ILF KL+ P G K KTG + T
Sbjct: 557 EVLSRMSNAFAQKMAGLESEIHEMAGADFNVGSPKQLGEILFDKLELPGGKKGKTGAYAT 616

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T+RVHT Y+     TGR
Sbjct: 617 GADILEDLAT-EHALPGLVLDWRQLSKLKSTYTDALQDHINAETRRVHTSYAQTGASTGR 675

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +AS +PNLQNIP++T+ G++IR AF++     L+S DYSQIELRILAH+A I  L Q F 
Sbjct: 676 MASTDPNLQNIPVRTEEGRRIREAFVAGEGNVLLSLDYSQIELRILAHMAGIDALKQAFA 735

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH M A+E+F V + +++P +RR AK INF +IYGIS F LA  LRIPR EA D+I
Sbjct: 736 EGQDIHAMTASEMFDVPMAEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRKEAQDFI 795

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF RFPGI  Y++ T  F +++G+V+T+FGR+IH  EIN+ K       +RAAINAPI
Sbjct: 796 DRYFQRFPGIRRYMDSTVEFAKEHGFVQTLFGRKIHTAEINA-KGPRAGFAKRAAINAPI 854

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ RRAMI +  ++    L  +MLLQ+HDEL+FEVPE  +     +    ME A 
Sbjct: 855 QGTAADVIRRAMIRMPGAIA--HLPARMLLQVHDELLFEVPEAAVEETIAVAKEVMEGAA 912

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
            P ++L V L V      NW E
Sbjct: 913 NPAVHLDVKLLVEAGQGQNWAE 934


>gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
 gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
          Length = 933

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/984 (41%), Positives = 600/984 (60%), Gaps = 70/984 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + +         +H A
Sbjct: 6   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVDGDHGPDAPTHLA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF IP  E++G+EADDIIA
Sbjct: 66  VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRAATEAFNIPCKELEGYEADDIIA 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  A   G  VTI+S+DKDLMQLV     ++D +K ++ID + V +K+G+ P+++V +
Sbjct: 126 TLSNQARDAGGRVTIVSSDKDLMQLVGDGVEMFDAMKNKRIDRDGVFEKFGVFPDRVVDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRR+ +++      L
Sbjct: 186 QALAGDSVDNVPGAPGIGVKTAALLINEYGSLEDLLDRAEEIKQPKRRQTLIDMRAQIEL 245

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L L D +  +L+SFL  +EF  L  R+A     +A    PV
Sbjct: 246 SKRLVELDANTPLDFTLDDLELRDPDPEKLLSFLAEMEFRTLTKRIADKLGAEA----PV 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + +  + E                                +E+ PQ           Q P
Sbjct: 302 IAEKASPE--------------------------------AEEAPQP---------EQPP 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   Y  + +   ++ W+ +    G  +    T +++   +  + I+++          
Sbjct: 321 FDASRYECVRDAAALETWIAQARERGWVAVDTETTSLNEMTADLVGISLAVEPGA----- 375

Query: 423 KVETIFIDLSVHTSQDST---GKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDK 473
                +I L  H   D+    G + L       ++ L  LK   E+   LKIG N+KYD 
Sbjct: 376 ---ACYIPLG-HRDGDAGDLFGSDKLAEGQLPLQQTLDLLKPMLEDPAILKIGQNMKYDA 431

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
            +  RYG+++   +D ML+SY +  G   H + ++++++LS+T    K +L S KS+I  
Sbjct: 432 KIFARYGVAVAPIDDTMLLSYAMHGGLHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITF 491

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           DK++  +   +A E++++ L+LW L +P+L   ++  VYE L++P++ V+++ME+ G+++
Sbjct: 492 DKVAIDEATAYAAEDADITLRLWQLFKPQLHRAQVTTVYETLERPLVPVLAEMEMHGVKV 551

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D+++L ++S   ++ +  LE  I++L+GE FN+ SP Q+G+ILF K+    G K KTG++
Sbjct: 552 DREVLSRMSNAFAQKMAGLEAEIHELAGEPFNVGSPAQVGEILFDKMSLEGGKKGKTGKY 611

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A  LE +   ++ +   IL+WRQLSK+KSTY D+L  HIN  T RVHT YS+    T
Sbjct: 612 STPADVLEDLAT-EHELPARILDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGANT 670

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS +PNLQNIP++T+ G++IR AF++ P   L+S DYSQIELRILAHIA I  L Q 
Sbjct: 671 GRLASTDPNLQNIPVRTEEGRRIREAFVAEPGNVLLSLDYSQIELRILAHIADIPALKQA 730

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F + LDIH M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR+EA +
Sbjct: 731 FADGLDIHAMTASEMFDVPLDQMTPEVRRRAKAINFGVIYGISGFGLARNLRIPRAEAQE 790

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF RFPGI  Y++ T  F +++G+V+T+FGRRIH  EIN+ K        RAAINA
Sbjct: 791 FIDRYFERFPGIRTYMDDTIAFAKEHGFVQTLFGRRIHTPEINA-KGPHAGFARRAAINA 849

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AAD+ RRAM+ +  ++ D  L  KMLLQ+HDEL+FEV EE +          ME 
Sbjct: 850 PIQGTAADVIRRAMVRMPDAIRD--LPAKMLLQVHDELLFEVAEEAVEDTIAAARDIMEG 907

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A  P + L V L V+     NW E
Sbjct: 908 AADPAVRLDVRLVVDAGRGANWAE 931


>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
 gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
          Length = 932

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/989 (40%), Positives = 601/989 (60%), Gaps = 82/989 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDKYKANREAMPEDLRPQIPLTRTATEAFNIACKEKEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G   TIIS+DKDLMQLV     + D +K + ID + V +K+G+ P+++V +
Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKSIDRDGVFEKFGVYPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L  A  IKQ KRR+ ++++A+  RL
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLERAGEIKQPKRRQTLIDHADQIRL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV L  + P+   LE L + D +  +L+ FL  +E                      
Sbjct: 247 SRDLVKLDENTPLDFTLEDLEVRDPDADQLLGFLAEME---------------------- 284

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP---QKLFLERLQKLS 359
                                       F +LS + +++  ++ P   +          +
Sbjct: 285 ----------------------------FRTLSKRVAEVLGKEAPTIAEAPVAADAPAAA 316

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P + + Y  + +T  +Q W+ ++   G  +    T  +D   ++ + +++     K  
Sbjct: 317 DVPFDAELYEHVSDTAALQAWIDRIYEFGYVAVDTETTGLDDMVAQLVGVSLCVEPGK-- 374

Query: 420 TSFKVETIFIDL--SVHTSQDSTGKNTL------TKEILSYLKKFFENEHFLKIGHNIKY 471
                   +I L      S D  G + L      T+E L  L    E+   LKIG N+KY
Sbjct: 375 ------ACYIPLIHKARGSDDLFGSDDLAEGQIPTEEALRLLTPMLEDPSILKIGQNMKY 428

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           D  +  + GI++   +D ML+SY + +G   H + ++++++LS+T    K +L + KS+I
Sbjct: 429 DSKIFAQLGINVAPIDDTMLLSYAMHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAI 488

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             DK+  +   ++A E++++ L+LW L +P+L    +  VYE L++P++ V++ ME +G+
Sbjct: 489 TFDKVPLADAVKYAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVPVLAAMERSGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D+D L ++S   ++ +  LE++IY+L+G KFN+ SPKQLG+ILF ++    G K KTG
Sbjct: 549 KVDRDTLSRMSNAFAQKMAGLEDDIYELAGRKFNVGSPKQLGEILFDEMGLEGGKKGKTG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T A  LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT YS+A  
Sbjct: 609 AYATGADVLEDLAT-EHDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGA 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRLAS +PNLQNIPI+++ G++IR AF++ P K L++ DYSQIELRILAHIA I  L 
Sbjct: 668 STGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELK 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F++ +DIH + A+E+FGV +++++  +RR AK INF +IYGIS F LA  LRIPR+EA
Sbjct: 728 QAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPRAEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I RYF RFPGI  Y+  TK F +++G+V+T+FGR+IH  EI S K       +RAAI
Sbjct: 788 QGFIDRYFERFPGIRTYMNDTKAFAKEHGFVQTLFGRKIHTPEI-SAKGPRAGFAQRAAI 846

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQIIV 945
           NAPIQG+AAD+ RRAMI +  +++D  L   MLLQ+HDEL+FEV    E+++  A++   
Sbjct: 847 NAPIQGTAADVIRRAMIRMPDAIKD--LPATMLLQVHDELLFEVEKGAEDDLIAAAR--- 901

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           H ME A  P + L V L V+  V  +W E
Sbjct: 902 HVMENAADPVVKLDVKLDVDAGVGASWAE 930


>gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
 gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
          Length = 933

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/979 (41%), Positives = 596/979 (60%), Gaps = 65/979 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + ++ +      +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLHRYVEGNTGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +G+EADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDLYKANRDAMPEDLRPQIPLTRRATEAFNIACKEKEGYEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G   TIIS+DKDLMQLV     + D +K ++ID + V +K+G+ PE++V +
Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVYPERVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+L+ +L  A+ IKQ KRR+ ++++A+  RL
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLDALLERAAEIKQPKRRQTLIDHADQIRL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV+L    P+   LE L +   +  +L+ FL  +EF  L  R+A     D   +E  
Sbjct: 247 SRRLVLLDEATPLDFTLEDLEVRTPDPDQLMPFLAEMEFRTLTKRIA-----DQLKVE-- 299

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + +IN T                                N+   P+         ++  P
Sbjct: 300 MPEINDT------------------------------PANAPAAPE---------IADVP 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   Y+++ + + +Q W+ ++   G  +    T  ++   ++ + I++     +  T+ 
Sbjct: 321 FDKAGYSQVDSAEALQGWIDQIYERGYVAVDTETTGLNEMTAELVGISLCV---EPGTAC 377

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +  I        S D  G + L +        L  LK   E+E  LKIG N+KYD  V 
Sbjct: 378 YIPLIH---KAAGSDDLFGSDDLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKVF 434

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            + GI++   +D MLMSY +  G   H + ++++++L +T    K +L S KS+I  DK+
Sbjct: 435 AQVGITVAPIDDTMLMSYAMHGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKV 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             S+   +A E+++V L+LW   +P L   ++  VYE L++PM+ V++ ME  GI++D+D
Sbjct: 495 PLSEAVPYAAEDADVTLRLWQQFKPALHRAQVTKVYETLERPMVAVLADMERAGIKVDRD 554

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++S   S+ + +LE+ +Y L G KFN+ SPKQLG+ILF ++    G K KTG + T 
Sbjct: 555 TLSRMSNAFSQKMAALEDEVYTLVGRKFNVGSPKQLGEILFDEMGLQGGKKGKTGAYATG 614

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  LE +   ++ + + IL+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGRL
Sbjct: 615 ADVLEDLAT-EHELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRL 673

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIPI+++ G++IR AF++   K L++ DYSQIELRILAHIA I  L   F++
Sbjct: 674 ASTDPNLQNIPIRSEEGRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKTAFDD 733

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPRSEA  +I 
Sbjct: 734 GQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGFID 793

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF RFPGI  Y++ TK F +++GYVET+FGRRIH   I + K        RAAINAPIQ
Sbjct: 794 RYFERFPGIRAYMDDTKAFAKEHGYVETLFGRRIHTPNIGA-KGPQAGFAARAAINAPIQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ RRAMI +  ++ +  L  KMLLQ+HDEL+FEV +       +     ME A  
Sbjct: 853 GTAADVIRRAMIRMPAAIAE--LPAKMLLQVHDELLFEVDQGAQDALIEAARSVMESAAD 910

Query: 954 PKINLRVPLKVNIKVSNNW 972
           P ++L V L V+     NW
Sbjct: 911 PVVHLDVKLTVDAGQGPNW 929


>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
 gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
          Length = 932

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/989 (40%), Positives = 602/989 (60%), Gaps = 82/989 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDKYKANREAMPEDLRPQIPLTRTATEAFNIACKEKEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G   TIIS+DKDLMQLV     + D +K + ID + V +K+G+ P+++V +
Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKSIDRDGVFEKFGVYPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L  A  IKQ KRR+ ++++A+  RL
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLERAGEIKQPKRRQTLIDHADQIRL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV L  + P+   LE L + D +  +L+ FL  +E                      
Sbjct: 247 SRDLVKLDENTPLDFTLEDLEVRDPDADQLLGFLAEME---------------------- 284

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP---QKLFLERLQKLS 359
                                       F +LS + +++  ++ P   +      +   +
Sbjct: 285 ----------------------------FRTLSKRVAEVLGKEAPTIAEAPVAADVPAAA 316

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P + + Y  + +T  +Q W+ ++   G  +    T  +D   ++ + +++     K  
Sbjct: 317 DVPFDAELYEHVSDTAALQAWIDRIYEFGYVAVDTETTGLDDMVAQLVGVSLCVEPGK-- 374

Query: 420 TSFKVETIFIDL--SVHTSQDSTGKNTL------TKEILSYLKKFFENEHFLKIGHNIKY 471
                   +I L      S D  G + L      T+E L  L    E+   LKIG N+KY
Sbjct: 375 ------ACYIPLIHKARGSDDLFGSDDLAEGQIPTEEALRLLTPMLEDHSILKIGQNMKY 428

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           D  +  + GI++   +D ML+SY + +G   H + ++++++LS+T    K +L + KS+I
Sbjct: 429 DSKIFAQLGINVAPIDDTMLLSYAMHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAI 488

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             DK+  +   ++A E++++ L+LW L +P+L    +  VYE L++P++ V++ ME +G+
Sbjct: 489 TFDKVPLADAVKYAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVSVLAAMERSGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D+D L ++S   ++ +  LE+ IY+L+G KFN+ SPKQLG+ILF ++    G K KTG
Sbjct: 549 KVDRDTLSRMSNAFAQKMAGLEDEIYELAGRKFNVGSPKQLGEILFDEMGLEGGKKGKTG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T A  LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT YS+A  
Sbjct: 609 AYATGADVLEDLAT-EHDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGA 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRLAS +PNLQNIPI+++ G++IR AF++ P K L++ DYSQIELRILAHIA I  L 
Sbjct: 668 STGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELK 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F++ +DIH + A+E+FGV +++++  +RR AK INF +IYGIS F LA  LRIPR+EA
Sbjct: 728 QAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPRAEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I RYF RFPGI  Y+  TK F +++G+V+T+FGR+IH  EIN+ K       +RAAI
Sbjct: 788 QGFIDRYFERFPGIRTYMNDTKAFAKEHGFVQTLFGRKIHTPEINA-KGPRAGFAQRAAI 846

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQIIV 945
           NAPIQG+AAD+ RRAMI +  +++D  L   MLLQ+HDEL+FEV    E+++  A++ + 
Sbjct: 847 NAPIQGTAADVIRRAMIRMPHAIKD--LPATMLLQVHDELLFEVEKGAEDDLIAAARQV- 903

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME A  P + L V L V+  V  +W E
Sbjct: 904 --MENAADPVVKLDVKLDVDAGVGASWAE 930


>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
 gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
          Length = 934

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/980 (40%), Positives = 596/980 (60%), Gaps = 60/980 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGSSFI+RA++A P L+RK DGLP+ A++GFCNML + ++ +      +H A
Sbjct: 5   KGCHLHLIDGSSFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEGNNGHDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++YP+YKANR  +PE L PQ+PL R AT+AF I   E +G+EADDIIA
Sbjct: 65  VIFDKGSHTFRNDLYPEYKANREAMPEDLRPQIPLTREATRAFNIACEEKEGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  VTIIS+DKDLMQLV     + D +K   ID+E V +K+G+ P+++V +
Sbjct: 125 TLACQARDLGGRVTIISSDKDLMQLVGDGVEMLDAMKNRLIDVEGVREKFGVSPDRVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRR+ ++E      +
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEALLDRAEEIKQPKRRDTLIEKRAQIEM 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EP 301
           S++LV L  + P+   L+ L + D +   L+ FL  +EF  L  R+A      A  I EP
Sbjct: 245 SKRLVQLDCNTPLDFTLDDLEVRDPDPEMLLGFLAQMEFRTLSKRIAEALGAVAPTIPEP 304

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                              Q++    +Q+P             +
Sbjct: 305 AA---------------------------------QSAATAPDQSPD------------W 319

Query: 362 P-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           P I  ++Y  + +   +  W+  +   G  +F   T +++   +  + I+++T   +   
Sbjct: 320 PAIEPETYVHVSDRATLDAWIATIRAQGYVAFDTETTSLNEMQADLVGISLATAPGR--- 376

Query: 421 SFKVETIFIDLSVHT--SQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +  +     D +       D+  +  L   E+L+ LK   E++  LKIG N+KYD  +L 
Sbjct: 377 ACYIPVAHKDGAADDLFGSDARAEGQLPLDEVLNALKPVLEDDAILKIGQNMKYDAKILA 436

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
            +GI++   +D MLMSY L +G   H + ++++++L+++    + +L S K+++  D++ 
Sbjct: 437 AHGITVAPIDDTMLMSYALHAGLHGHGMDTLSERYLNHSPIPIRSLLGSGKAAVTFDRVP 496

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            ++  ++A E++++ L+LWL L+P+L   ++  VYE L++P++ V+++ME  G+ +D+D 
Sbjct: 497 VAEAVKYAAEDADITLRLWLTLKPQLHRAQVTTVYETLERPLVPVLARMERDGVLVDRDT 556

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +S + ++ +  LE  I+ L+   FN+ SPKQLG+ILF ++  P G K KTG + T A
Sbjct: 557 LRAMSGKFAQKMAGLESEIHALARRSFNVGSPKQLGEILFDEMGLPGGEKGKTGAYATGA 616

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +   ++ +   +L+WRQLSK+KSTY D+L +HI+  T RVHT Y      TGR +
Sbjct: 617 DVLEDLAT-EHDLPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYLQTGASTGRFS 675

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++++ G++IR AF++ P  +L+S DYSQIELRILAH+A I  L Q F + 
Sbjct: 676 SSDPNLQNIPVRSEEGRRIREAFVAAPGNRLVSLDYSQIELRILAHVAGIETLKQAFRDG 735

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH M A+E+F V + +++P++RR AK INF +IYGIS F LA  LRIPR EA  +I R
Sbjct: 736 HDIHAMTASEMFNVPLAEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDR 795

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y++ T  F +++GYV+T+FGR+IH  EI + K        RAAINAPIQG
Sbjct: 796 YFERFPGIKDYMDATTAFAKEHGYVQTLFGRKIHTPEIAA-KGPRAGFARRAAINAPIQG 854

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI + +++E   L  KMLLQ+HDEL+FEV E+ +     +    M+ A  P
Sbjct: 855 TAADIIRRAMIRMPEAIE--GLPCKMLLQVHDELIFEVAEDSVDRLIDVARAVMQGAADP 912

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            + L VPL V+     NW E
Sbjct: 913 AVRLDVPLVVDAGQGRNWAE 932


>gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
 gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
          Length = 931

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/988 (41%), Positives = 598/988 (60%), Gaps = 81/988 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLQRYVEGNHGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +G+EADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDLYKANREAMPEDLRPQIPLTRDATKAFNIACKEKEGYEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G   TIIS+DKDLMQLV     + D +K + ID E V +K+G+ PE++V +
Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGDGVEMLDAMKNKTIDREGVFEKFGVYPERVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L  A  IKQ KRR+ +++ A+  RL
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLDRAEEIKQPKRRQTLIDNADQIRL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SRKLV L  D P+   LE L + D +   L+ FL  +E                      
Sbjct: 247 SRKLVQLDEDTPLDFTLEDLEVRDPDPDTLLGFLAEME---------------------- 284

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP--QKLFLERLQKLSQ 360
                                       F +LS + + +   + P  +   +    + + 
Sbjct: 285 ----------------------------FRTLSKRIADVLGREAPVIEAPAVPDAPEAAD 316

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P    +Y  + +   +Q W+ ++   G  +    T  +D   ++ + I++     K   
Sbjct: 317 IPFEAGNYEHVSDAAALQVWIDQIYEFGYVAVDTETTGLDEMVAELVGISLCVQPGK--- 373

Query: 421 SFKVETIFIDL--SVHTSQDSTGKNTL------TKEILSYLKKFFENEHFLKIGHNIKYD 472
                  +I L    HT  D  G   L      T+E L  L    E+   +KIG N+KYD
Sbjct: 374 -----ACYIPLIHKTHTGDDLFGSEDLAEGQIPTEEALRMLTPMLEDPSIMKIGQNMKYD 428

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
             +  + GI++   +D ML+SYV+ +G   H + ++++++L +T    K +L S KS++ 
Sbjct: 429 SKIFAQLGITVAPIDDTMLLSYVMHAGLHGHGMDALSERYLGHTPIPIKPLLGSGKSAVT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            DK+  +Q   +A E++++ L+LW L +P+L   ++  VYE L++P++ V++ ME +GI+
Sbjct: 489 FDKVPLAQAVPYAAEDADITLRLWQLFKPQLHRIQVTKVYETLERPLVPVLAAMERSGIK 548

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D+D L ++S   ++ +  LE+ IY+L+G KFN+ SPKQLG+ILF ++    G K KTG 
Sbjct: 549 VDRDTLSRMSNAFAQKMAGLEDEIYELAGRKFNVGSPKQLGEILFDEMGLEGGKKGKTGA 608

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A  LE +   ++ +   IL+WRQLSK+KSTY D+L +HINK T RVHT YS+A   
Sbjct: 609 YATGADVLEDLAT-EHDLPGRILDWRQLSKLKSTYTDALQDHINKDTGRVHTSYSIAGAS 667

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS +PNLQNIPI+++ G++IR AF++   K L++ DYSQIELRILAHIA I  L Q
Sbjct: 668 TGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGKVLVALDYSQIELRILAHIADIPELKQ 727

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F++ +DIH + A+E+FGV +++++P +RR AK INF +IYGIS F LA  LRIPR+EA 
Sbjct: 728 AFKDGIDIHALTASEMFGVPLDEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQ 787

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +I RYF RFPGI  Y++ TK F +++G+V+T+FGR+I+  EI + K       +RAAIN
Sbjct: 788 GFIDRYFERFPGIRTYMDNTKAFAKEHGFVQTLFGRKINTPEIGA-KGPRAGFAQRAAIN 846

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQIIVH 946
           APIQG+AAD+ RRAMI +  +++D  +   MLLQ+HDEL+FEV    E+ +  A++ +  
Sbjct: 847 APIQGTAADVIRRAMIRMPAAIKD--IPATMLLQVHDELLFEVEKGAEDALIKAARDV-- 902

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME A  P + L V L V+     NW E
Sbjct: 903 -MENASEPVVKLDVKLIVDAGKGANWAE 929


>gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601]
 gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601]
          Length = 935

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/986 (41%), Positives = 597/986 (60%), Gaps = 72/986 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML K ++++      +H A
Sbjct: 6   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQKYVEDNAGPDAPTHVA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E++G+EADDIIA
Sbjct: 66  VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRRATEAFNIACKELEGYEADDIIA 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTIIS+DKDLMQLV     + D +K  +ID + V +K+G+ P+++V +
Sbjct: 126 TLARQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNRRIDRDGVFEKFGVFPDRVVDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRR+ ++E  E   L
Sbjct: 186 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEDLLDRAEEIKQPKRRQTLIEKREQIEL 245

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L + D +   L+ FL  +EF  L  R+A   D +A    PV
Sbjct: 246 SKRLVQLDEETPLEFGLDDLEVRDPDPEVLLGFLAEMEFRSLTKRIADQLDAEA----PV 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + D  T E    A                            E TP+   +E         
Sbjct: 302 IPD-TTPEGANPA---------------------------EEGTPEMPAIE--------- 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
              D+Y  +   +D+  ++      G  +    T  ++      + I++ T         
Sbjct: 325 --PDTYIWVKTAEDLAPFIDAAHQRGWVAVDTETTGLNEMACDLVGISLCTEPG------ 376

Query: 423 KVETIFIDLSVHTSQDST--GKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKL 474
             E  +I L+     D    G   L       +  L  LK   E+   +KIG N+KYD  
Sbjct: 377 --EACYIPLAHRADSDGGLFGDGDLAEGQMPMQAALDLLKPLLEDPAVMKIGQNMKYDAK 434

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           +  RYG+ +   +D MLMSY +++G   H + ++++++LS+T    KE+L S K     D
Sbjct: 435 IFARYGVRIAPIDDTMLMSYAMNAGLHGHGMDALSERYLSHTPIPIKELLGSGKKMKTFD 494

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           ++      ++A E++++ L+LW LL+P+L    +  VYE +++P++ V+++ME+ G+Q+D
Sbjct: 495 QVPIEDAVKYAAEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAGVQVD 554

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +D L ++S   S+ + +LE  I++L+GE FN+ SPKQLG+ILF K+    G K KTG + 
Sbjct: 555 RDTLSRMSNAFSQKMAALEAEIHELAGESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYA 614

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE +   ++ +   +L+WRQLSK+KSTY D+L  HINK T RVHT Y ++   TG
Sbjct: 615 TGADVLEDLAT-EHELPARVLDWRQLSKLKSTYTDALQEHINKDTGRVHTSYVISGANTG 673

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++++ G++IR AF++P  K +++ DYSQIELRILAH+A+I  L Q F
Sbjct: 674 RLSSTDPNLQNIPVRSEEGRRIREAFVAPEGKTIVALDYSQIELRILAHMAEIDALKQAF 733

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH M A+E+F V +++++ ++RR AK INF +IYGIS F LA  LRIPRSEA  +
Sbjct: 734 RDGQDIHAMTASEMFNVPMDEMTSEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGF 793

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF RFPGI  Y++ T  F +++  VET+FGR IH  EI + K       +RAAINAP
Sbjct: 794 IDRYFERFPGIRTYMDDTVAFAKEHKRVETLFGRVIHTPEIAA-KGPRAGFAKRAAINAP 852

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQIIVHSM 948
           IQG+AADI RRAMI +  ++E  KL   MLLQ+HDEL+FEV    EE + +A++ +   M
Sbjct: 853 IQGTAADIIRRAMIRMPDAIE--KLPATMLLQVHDELIFEVEQGAEEALISAARTV---M 907

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A  P + L VPL V+     +W E
Sbjct: 908 EGAAEPVVKLDVPLVVDAGQGKSWAE 933


>gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
 gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
          Length = 932

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/984 (40%), Positives = 596/984 (60%), Gaps = 70/984 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + ++ +    + +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNAGGDV-THVA 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E++GFEADDIIA
Sbjct: 64  VIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEMEGFEADDIIA 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G   TIIS+DKDLMQLV     + D +K + ID++ V +K+G+ P+++V +
Sbjct: 124 TLACQAREAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKTIDVDGVFEKFGVGPDRVVDV 183

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++E+     L
Sbjct: 184 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGEIKQPKRRQTLIEHRAQIEL 243

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D+ +   +E L + D     L+ FL  +EF  L  R++     +A    P 
Sbjct: 244 SKRLVQLDCDMELDFTIEDLEVRDPEPETLLGFLAEMEFRTLTKRISGALGVEA----PA 299

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           V +   T                            T+   +E+ P              P
Sbjct: 300 VPEPAAT----------------------------TASPEAEEHP--------------P 317

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST--------- 413
           ++   +  I + + +Q W+  +   G  +    T  ++   +  + +++           
Sbjct: 318 LSASEHVTIRDAETLQSWIDAIHARGVVAVDTETTGLNEMRADLVGVSLCVDPGRAAYLP 377

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L  KD           DL    ++ + G+    +  L  LK   E+   LKIG N+KYD 
Sbjct: 378 LAHKDGGGAD------DLFGGEAKLAEGQLDF-ETALGMLKPVLEDPAVLKIGQNMKYDA 430

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
            +L R GI++   +D ML+SY L +G   H + ++++++L +T    K +L + KS+I  
Sbjct: 431 KILARNGITVAPIDDTMLLSYALHAGLHGHGMDALSERYLDHTPIPIKTLLGTGKSAITF 490

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D +   +  ++A E++ + L+LW  L+P+L + ++  VYE +++PM+ V+++ME+ GI++
Sbjct: 491 DFVPIEEATKYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKV 550

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D+D L ++S   ++ +  LE  I++L+GE FN+ SP QLG+ILF K+ F  G   K+G++
Sbjct: 551 DRDTLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPAQLGEILFEKMGFEGGKTGKSGKY 610

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A  LE +   ++ + + +L+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   T
Sbjct: 611 STPADVLEDLAT-EHDLPRRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSIAGANT 669

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS +PNLQNIP++++ G++IR AF++ P   L+S DYSQIELRILAHIA I  L   
Sbjct: 670 GRLASTDPNLQNIPVRSEEGRRIREAFVAEPGHVLVSLDYSQIELRILAHIAGIDALKTA 729

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F + LDIH M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR+EA  
Sbjct: 730 FRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQA 789

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I  YF RFPGI  Y++ T  F +++ YV+T+FGR+IH  EI + K       +RAAINA
Sbjct: 790 FIDTYFERFPGIRAYMDDTVAFAKEHKYVQTLFGRKIHTPEIGA-KGPQAGFAKRAAINA 848

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI RRAM+ +  ++ D  L  +MLLQ+HDEL+FEV E+ +      +   ME 
Sbjct: 849 PIQGTAADIIRRAMVRMPAAIAD--LPARMLLQVHDELIFEVEEDAVDRVIPAVRQVMEG 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A  P ++L VPL V+     +W E
Sbjct: 907 AAAPVVHLDVPLTVDAGQGRSWAE 930


>gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654]
 gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654]
          Length = 932

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/981 (41%), Positives = 595/981 (60%), Gaps = 64/981 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS++I+RA++A P L+RK DGLP+ A++GFCNML + ++++      +H A
Sbjct: 5   KGCHLHLIDGSAYIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEDNTGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD  + TFRN++Y  YKANR ++PE L PQ+PL R AT AF I   E++G+EADDIIA
Sbjct: 65  VVFDKGSHTFRNDMYDQYKANRDEMPEDLRPQIPLTREATIAFNIACKEMEGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +  + G  VTI+S+DKDLMQLV     + D +K ++ID E VI+K+G+ PE++V +
Sbjct: 125 TLACMGREAGGQVTILSSDKDLMQLVGDGVEMLDPMKNKRIDREGVIEKFGVGPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRRE + +  E   L
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLETLLDRAEEIKQPKRRETLTQKREQIEL 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + PI   L+ L ++D +  +L+ FL  +EF  L  R+A     D   +EP 
Sbjct: 245 SKRLVQLDCETPIDFTLDDLEVQDPDPDKLMPFLAKMEFRTLTRRIA-----DKLGVEP- 298

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L I   E K                           + ++   P+              
Sbjct: 299 -LAIPEPEAK------------------------DAPEGDAPDAPE-------------- 319

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---D 419
           I+ + Y  + + + + +W+  +   G  +    T +++   ++   I ++ +  +     
Sbjct: 320 IDPEKYEWVKDMEALDRWIALIRDHGYVAVDTETTSLNEMQAEFAGICLAVVPGEACYIP 379

Query: 420 TSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              KV   E +F D  +   Q S        ++L+ LK   E+   LKI  N KYD  + 
Sbjct: 380 VGHKVGDGEGLFADDKLAEGQLSL------DDVLAALKPVLEDPAILKIFQNAKYDTKIF 433

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            R+G+++   +D MLMSY + SG  +H + ++++ +L +T    K +L + KS+I  DK+
Sbjct: 434 SRHGLNVAPIDDTMLMSYAMFSGLHNHGMDTLSEHYLGHTPISIKTLLGTGKSAITFDKV 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                 ++A E+++V L+LW L +P+L  EK+  VYE L++P++ V++QME+ G+Q+D+D
Sbjct: 494 KIEDAVKYAAEDADVTLRLWQLFKPRLHREKVTTVYETLERPLVPVLAQMEMHGVQVDRD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++S   ++ +  LE  I++L+G+ FN+ SPKQLG+ILF KL    G K KTG + T 
Sbjct: 554 TLSRMSNAFAQKMAGLEAEIHELAGQSFNVGSPKQLGEILFDKLGLEGGKKGKTGAYATG 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  LE +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT Y      TGRL
Sbjct: 614 ADVLEDL-AAQHDLPARVLDWRQLSKLKSTYTDALQTHIDPDTGRVHTSYLQTGASTGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIPI+T+ G++IR AF++P  K L+S DYSQIELRILAH+A I  + Q F +
Sbjct: 673 ASTDPNLQNIPIRTEEGRRIREAFVAPEGKVLVSLDYSQIELRILAHVAGIESMKQAFRD 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A+E+F V +++++P +RR AK INF +IYGIS F LA  LRI R EA  +I 
Sbjct: 733 GEDIHAATASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIARGEAQGFID 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF ++PGI EY++ T  F +++G+V T+FGR+IH  EIN+ K        RAAINAPIQ
Sbjct: 793 RYFEKYPGIKEYMDDTVAFAKEHGHVATLFGRKIHTPEINA-KGPHAGFARRAAINAPIQ 851

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI RRAMI +  ++    L  KMLLQ+HDEL+FEV E  +  A  +I   ME A  
Sbjct: 852 GSAADIIRRAMIRMPDAIS--GLPVKMLLQVHDELIFEVEEGGVDKAVSVIRDVMEGAAD 909

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
           P + L +PL V+     NW E
Sbjct: 910 PAVKLDIPLVVDAGQGANWAE 930


>gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37]
 gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37]
          Length = 934

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/987 (40%), Positives = 592/987 (59%), Gaps = 76/987 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS++I+RAF+A P L+RK DGLP+ A++GFCNML + ++++      +H A
Sbjct: 7   KGCHLHLIDGSAYIFRAFHALPPLTRKSDGLPIGAVSGFCNMLHRYVEDNTGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD  + TFRN++Y DYKANR  +PE L PQ+PL R +T+AF I   EI+GFEADDI+A
Sbjct: 67  VVFDKGSHTFRNDLYHDYKANREAMPEELRPQIPLTRESTEAFNIACKEIEGFEADDIMA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A + G  VTI+S+DKDLMQLV     + D +K ++ID E V++K+G+ PE++V +
Sbjct: 127 TLACMAREAGGRVTILSSDKDLMQLVGDGVEMLDPMKNKRIDREGVMEKFGVGPERVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRRE ++E      L
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAGEIKQPKRRETLIEKRAQIEL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L   + +   L+ L +++ +   L++FL  +EF  L  R+A             
Sbjct: 247 SKKLVQLDCGMDLPFTLDDLEVKEPDPDTLLAFLTKMEFRTLTKRIA------------- 293

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  EN G+                            +   P+    E       +P
Sbjct: 294 -------ENAGV---------------------------EAPAIPEPEQQETPDAAPDWP 319

Query: 363 -INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+  +Y  + +   + +W+ +   +G+ +    T  ++      + I+++         
Sbjct: 320 AIDPAAYECVQDMAALDRWIARAMDLGTVAVDTETTGLNEMLCDLVGISLAVAPG----- 374

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLT-----------KEILSYLKKFFENEHFLKIGHNIK 470
              E  +I L+ H ++D  G+               ++ L  LK   E+   +KIG N+K
Sbjct: 375 ---EACYIPLA-HLAEDG-GEGLFASDAKAEGQIPMQQALDALKPLLEDASVMKIGQNMK 429

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527
           YD  +  RYGI +   +D MLMSY L  G   H + ++++++L++T    K++L + KS 
Sbjct: 430 YDAKIFSRYGIEIAPIDDTMLMSYALHGGEHQHGMDTLSERYLAHTPIPIKDLLGTGKSQ 489

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           I  D++   +   +A E++++ L+L L  +P+L    +  VYE L++P++ V+  ME+ G
Sbjct: 490 ITFDRVPLDKATGYAAEDADITLRLALTFKPQLHRAHVTRVYETLERPLVPVLKAMEMRG 549

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D+  L ++S + ++ +  LEE I+ L+GEKFN+ SP QLGDILF K+  P G + K 
Sbjct: 550 IKVDRATLSRMSGKFAQKMAELEEEIHALAGEKFNVGSPAQLGDILFEKMSLPGGKRGKN 609

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G++ T A  LE +   ++ +   +L+WRQLSK+KSTY D+L  HIN  T RVHT YS+A 
Sbjct: 610 GKYSTPADVLEDLAT-EHDLPGRVLDWRQLSKLKSTYTDALQEHINPDTGRVHTSYSIAG 668

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRLAS +PNLQNIP++++ G++IR AF++P    L+S DYSQIELRILAH+A I  L
Sbjct: 669 ANTGRLASNDPNLQNIPVRSEEGRRIREAFVAPEGHTLVSLDYSQIELRILAHMADIDAL 728

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            Q F + LDIH M A+E+F V +++++P +RR AK INF +IYGIS F LA  LRIPR+E
Sbjct: 729 KQAFRDGLDIHAMTASEMFNVPLDEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRAE 788

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +I RYF RFPGI +Y++ T  F  ++  VET+FGR IH  EI + K       +RAA
Sbjct: 789 AQGFIDRYFERFPGIKQYMDDTVKFANEHKRVETMFGRVIHTPEIGA-KGPRAGFAKRAA 847

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI RRAM+ +  ++   KL  KMLLQ+HDEL+FEV +        +    
Sbjct: 848 INAPIQGTAADIIRRAMVRMPDAIA--KLPAKMLLQVHDELIFEVEDGAAGDLIDVAREV 905

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+ AC P + L VPL V+     NW E
Sbjct: 906 MQNACDPVVKLDVPLVVDAGQGANWAE 932


>gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
 gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
          Length = 935

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/983 (40%), Positives = 589/983 (59%), Gaps = 68/983 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++     +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+   +FRN++Y  YKANRP  PE L+PQ PL R AT+AF I   EI+GFEADDIIA
Sbjct: 68  VIFDHSGKSFRNDMYDLYKANRPPAPEDLVPQFPLTREATRAFNIACKEIEGFEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +
Sbjct: 128 TLACQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVREKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE++L  A  IKQ KRR+ ++E  E   +
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEDLLDRAEEIKQPKRRQTLIEKREQIEM 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D+ +   L+ L + D +   L+ FL  +EF  L  R+A     +A  I   
Sbjct: 248 SKRLVQLDCDMELDFTLDDLEVRDPDAETLLGFLAEMEFRTLSKRMADQLGREAPTIPE- 306

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                       A  T        +   F S                         ++Y 
Sbjct: 307 ------------APSTAAAALELPEAPGFDS-------------------------AEYT 329

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
              D+ T       +QQW+  +   G  +    T  ++   +  + I +  +        
Sbjct: 330 TVRDAET-------LQQWIDLIREHGYVAVDTETTGLNEMIADLVGICLCVV-------- 374

Query: 423 KVETIFIDLS--VHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKL 474
             +  ++ L+     S D  G + L       +  L  LK   E++  LKIG N+KYD  
Sbjct: 375 PGQACYVPLTHKAGNSDDLFGSDDLAEGQMPLETALEMLKPVLEDDAILKIGQNMKYDAK 434

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           +  R GI +   +D ML+SY L  G   H + ++++++L +     K +L S KS+I  D
Sbjct: 435 IFARNGIDITPIDDTMLLSYALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFD 494

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           ++       +A E++++ L+LW   +P+L  +++  VYE L++P++ V++QME  GI++D
Sbjct: 495 RVPIDDATPYAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQNGIKVD 554

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +D L ++S   S+ + +LE  I++L+GE FN+ SPKQLG+ILF KL  P G K KTG + 
Sbjct: 555 RDTLSRMSNAFSQKMAALEAEIHELAGESFNVGSPKQLGEILFDKLSLPGGKKGKTGAYA 614

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE +   ++ +   +L+WRQLSK+KSTY D+L  HI+  T RVHT Y      TG
Sbjct: 615 TGADILEDLAT-EHELPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGANTG 673

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RLAS +PNLQNIP++++ G++IR AF++     L+S DYSQIELRILAH+A I  L Q F
Sbjct: 674 RLASSDPNLQNIPVRSEEGRRIREAFVAEEGNVLLSLDYSQIELRILAHVAGIDALKQAF 733

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH M A+E+F V +E+++P++RR AK INF +IYGIS F LA  LRIPR EA  +
Sbjct: 734 ADGHDIHAMTASEVFDVPLEEMTPEIRRKAKAINFGVIYGISGFGLARNLRIPRGEAQGF 793

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF RFPGI +Y++ T NF + +GYV+T+FGR+IH  EI + K    +  +RAAINAP
Sbjct: 794 IDRYFERFPGIRQYMDDTVNFAKDHGYVQTLFGRKIHTPEI-AAKGPRASFAKRAAINAP 852

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AAD+ RRAM+ +  ++    L  +MLLQ+HDEL+FEVPE+ +     +    ME A
Sbjct: 853 IQGTAADVIRRAMVRMPDAIA--HLPARMLLQVHDELLFEVPEDHVDETISVAREIMEGA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
             P +++ V L V+     NW E
Sbjct: 911 ADPAVHMDVKLVVDAGRGQNWAE 933


>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 933

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/983 (41%), Positives = 598/983 (60%), Gaps = 70/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML K ++ +      +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQKYVEGNAGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E++G+EADDIIA
Sbjct: 68  VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQMPLTREATKAFNIACKELEGYEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTI+S+DKDLMQLV     + D +K ++ID + V +K+G+ PE++V +
Sbjct: 128 TLAVQAREAGGQVTIVSSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVGPERVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRR+ ++E  +   L
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLESLLDRAEEIKQPKRRQTLIEKRDQIEL 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L  + P+   L+ L ++D     L+ FL  +EF  L  R+A     +A    PV
Sbjct: 248 SKKLVQLDENTPLDFTLDDLEVKDPEPDTLLGFLAEMEFRTLTKRIADKLGAEA----PV 303

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           +                               +D  + ++  +                P
Sbjct: 304 I-------------------------------ADAPAPVDEPEA------------ETIP 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   Y  + +   +Q+W+ +    G  +    T  ++   +  + I++           
Sbjct: 321 FDAAKYECVRDAGALQKWIDQAYERGWVAVDTETTGLNEMIADLVGISLCIEPG------ 374

Query: 423 KVETIFIDLSVHTS--QDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474
             E  +I L+   S   D  G + L +      E L+ LK  FE+   LKIG N+KYD  
Sbjct: 375 --EACYIPLTHRESATDDLFGSDALAEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAK 432

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           +  RYG+++   +D MLMSY +  G+  H + ++++++LS+T    K +L S KS+I  D
Sbjct: 433 IFARYGVNVVPIDDTMLMSYAMHGGKHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITFD 492

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+   +   +A E++++ L+LW L +P+L   ++  VYE L++P++ V+++ME+ GI++D
Sbjct: 493 KVPIDEATAYAAEDADITLRLWKLFKPQLHQVQVTTVYETLERPLVPVLAEMEMNGIKVD 552

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +D+L ++S   ++ +  LE  I++L+GE FN+ SP QLG+ILF K+    G K KTG++ 
Sbjct: 553 RDVLSRMSNAFAQKMAGLEAEIHELAGENFNVGSPAQLGEILFDKMGLEGGKKGKTGKYS 612

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE +   ++ + + +L+WRQLSK+KSTY D+L  HIN  T RVHT YS+    TG
Sbjct: 613 TGADILEDLAT-EHELPRRVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGANTG 671

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RLAS +PNLQNIP++T+ G++IR AFI+ P   L+S DYSQIELRILAHIA I  L Q F
Sbjct: 672 RLASTDPNLQNIPVRTEEGRRIRGAFIAEPGNVLVSLDYSQIELRILAHIADIPALKQAF 731

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            + LDIH M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR+EA  +
Sbjct: 732 ADGLDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGF 791

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF RFPGI  Y++ T  F +++GYV+T+FGR+IH  EIN+ K      + RAAINAP
Sbjct: 792 IDRYFERFPGIRRYMDDTVAFAKEHGYVQTLFGRKIHTPEINA-KGPHAGFSRRAAINAP 850

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AAD+ RRAM+ +  ++  + L  KMLLQ+HDEL+FEV E  +     I    ME A
Sbjct: 851 IQGTAADVIRRAMVRMPGAI--NGLPAKMLLQVHDELLFEVAEGAVDETIGIARDVMEGA 908

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
             P + L + L  +     NW E
Sbjct: 909 ADPAVKLDIKLVADAGQGANWAE 931


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/993 (42%), Positives = 592/993 (59%), Gaps = 80/993 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---------KHDGLPVNAIAGFCNMLWKLLQN 51
           +  ++ L+LVDGS++I+RAF+   +L R         K DG P +A+ GFCNMLWKL+ +
Sbjct: 7   LGPDSRLYLVDGSAYIFRAFH---VLDRHAGGSERFQKKDGTPTSAVFGFCNMLWKLVSD 63

Query: 52  SR---KESIA--SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           +    +E I   +HFAV+FD+   +FRN +Y +YKANR   PE L+PQ PLVR AT+AFG
Sbjct: 64  AHDAAQEEIGQPTHFAVVFDHSGESFRNALYDEYKANRSAPPEDLVPQFPLVRDATRAFG 123

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +P +E+ G+EADDIIAT+  +AE++G    I+S+DKDLMQL++  T ++D +K   ID +
Sbjct: 124 LPCLEMAGYEADDIIATHARLAEEKGAETVIVSSDKDLMQLITDRTVMFDPMKNRIIDRQ 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            VI+K+G  PE+M+ +QAL GDS DN+PG+PGIG KTAA LL++YG+L+ +L  A  IKQ
Sbjct: 184 AVIEKFGAGPERMIDMQALMGDSTDNVPGVPGIGPKTAAQLLEDYGSLDALLDRADEIKQ 243

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK-ALEFTKLI 285
           KKRRE ++ + E A LSR+LV L   VP+    E L L   +   L+ FL+  +EF  L 
Sbjct: 244 KKRREMLIAHREDALLSRQLVTLDRHVPVEEAPEDLGLSPFDHAALVRFLEDEMEFNTLP 303

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
            R+           E   L++ TTE    A+                             
Sbjct: 304 KRIR----------EAGGLEVPTTEASPAAV----------------------------- 324

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
                           PI+ + Y  I + K ++  + + E  G  +    TD ++   + 
Sbjct: 325 ----------------PIDQNGYEIIFDPKILRALMAEAEEHGIIAIDTETDNLEGMKAN 368

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              I+ S +  K      V     DLS+   + S   +  T   L  LK    +   LK+
Sbjct: 369 LCGISFSIVPGKA-YYVPVGHGQTDLSLDDPEHSQQMSEATA--LDILKPVLLDPSILKV 425

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS-HDIASIAQKWLSYT---RKEIL 521
           G N+KYD L+L    I + G++D ML+SY  D G +S H +  ++++ L +     KEI+
Sbjct: 426 GQNLKYDLLILRERDIDVVGYDDTMLLSYAADCGFASLHGMDELSKRHLGHEPIPYKEIV 485

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            + K       +       +A E+++V L+L  +L+ + I  ++  VYE +D+P++ V++
Sbjct: 486 GTGKKQKTFGDVPIKDAYIYAAEDADVTLRLHTILKSRAIESQVYTVYETMDRPLVSVIT 545

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI++D+D L  +S E ++ + + E  ++D++GE+FNL+SPKQ+GDILF KL  P 
Sbjct: 546 DMERAGIKVDRDRLSALSGEFAQRMAAHEAAVHDIAGERFNLASPKQIGDILFGKLGLPG 605

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           G KTKTG W T A  LE +      I + IL  R L+K+K TY D+L   I+ +T RVHT
Sbjct: 606 GKKTKTGAWSTAADTLETLAADGAEIAQEILSHRGLAKLKGTYTDALSESIHPKTGRVHT 665

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +SLAST TGRL+S +PNLQNIPI+T+ G+KIR AFI      LISADYSQIELR+LAHI
Sbjct: 666 SFSLASTTTGRLSSNDPNLQNIPIRTEDGRKIREAFIPEDGNVLISADYSQIELRLLAHI 725

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A+I PL + F   LDIH M AAE+FGV +E + P +RR AK INF IIYGIS F LA  L
Sbjct: 726 AEIGPLIEAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAINFGIIYGISAFGLARNL 785

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I R EA+ +IKRYF RFPGI  Y+++T    R +GYVET+FGRR H   I + + +IR 
Sbjct: 786 GIGRDEASLFIKRYFERFPGIKAYMDETIEGARVHGYVETLFGRRSHTPNIKAKQPNIRM 845

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER AINAPIQGSAADI +RAMI V  +L  H+L+ KMLLQ+HDELV E P ++    +
Sbjct: 846 GAERQAINAPIQGSAADIVKRAMIRVPAALAAHRLSAKMLLQVHDELVVECPADQADETA 905

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++   ME A  P ++L VPL V      +W++
Sbjct: 906 AVLKDVMEGAAGPALSLSVPLVVEAGQGASWEQ 938


>gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 939

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/976 (39%), Positives = 603/976 (61%), Gaps = 53/976 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR---KESIASHFA 62
           H++L+DGS +I+RA+YA P L+RK DGLPV A++GFCNML+K L+ SR   K    +HFA
Sbjct: 8   HIYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCNMLYKFLEESRSLDKVDRPTHFA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD     FRN+IY +YKANR   PE L+PQ   +R A +AF I  +E+  +EADD+IA
Sbjct: 68  VIFDTARKNFRNDIYKEYKANRQDTPEDLIPQFSYIRKAVEAFNILGVELANYEADDLIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY   A K+   VTIIS+DKDLMQLV   T + DT+K++ I  E V +K+G+ P+K++ +
Sbjct: 128 TYKEQASKKNIKVTIISSDKDLMQLVDENTFMMDTMKDKYIGKEEVKEKFGVYPDKVIDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GDS DNIPG+PGIG KTAA L+ ++G+LE +L NAS IKQ KRR+ +L+  + A +
Sbjct: 188 QSLAGDSSDNIPGVPGIGIKTAAELINQFGSLEKVLENASSIKQPKRRQTLLDNKDKALI 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L+ DVP+   L+   L+  +  +++ FL+ +EF +L  ++ + Y   +    P 
Sbjct: 248 SKKLVTLKKDVPVKTSLDEFALKSIDPDKILKFLQEMEFGRLFKKLESDYGKFSGKASP- 306

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                 TE+K  ++E+               L D          P+K+  ++        
Sbjct: 307 --QSKLTESKEPSVES-------------GKLPD---------VPEKIIEKK-------- 334

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                ++ I +  +++  ++K +  G  +    T+++D   +  + I++S          
Sbjct: 335 -----FSLIFDMSELKSVLKKSDEKGLFAIDTETNSLDTMVANLVGISLSYRPG------ 383

Query: 423 KVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             E  +I +      D + K  L  K++LS +K + E+    K+G NIKYD  +  ++GI
Sbjct: 384 --EAFYIPIGHQNKSDPSIKKQLKLKDVLSVIKPYLEDPTVKKVGQNIKYDYRIFLKHGI 441

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
            M   ED MLMSY LD+G++ H +  +++  L++   + K++    KS +  D +   Q 
Sbjct: 442 QMNSIEDTMLMSYSLDAGKNRHGMDLLSELHLNHKTISFKDVAGIGKSQVTFDFVDIEQA 501

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           +++A E++++ L+L+ +   +L  E +L VY+ L+KP+I ++S +E  GI+ID+++L+++
Sbjct: 502 KDYACEDADITLRLYKMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNILEKL 561

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S +    + +LE+ I+ ++ E+FN+ SPKQLGD+++ KLK     KTK G + T    LE
Sbjct: 562 SKKFEIEIQNLEKKIFKIAKEEFNIGSPKQLGDVIYEKLKIAGSKKTKKGNFATNVAVLE 621

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +    +   K +L WRQ SK+K+TY D+LP +IN +++RVHT + LA+T TGRLAS  P
Sbjct: 622 DLASQGHEFPKLVLNWRQKSKLKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLASANP 681

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPIK   G++IR AF+S    KLISADYSQIE+RILAH+  +  L + F N  DIH
Sbjct: 682 NLQNIPIKNIEGKEIRSAFVSDKNSKLISADYSQIEMRILAHMGDVKELKKAFLNKEDIH 741

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            + A++IF V+++KV   MRR AK INF IIYGIS + LA Q+ +  SEA +++K YF +
Sbjct: 742 TLTASQIFDVSLKKVDEDMRRKAKAINFGIIYGISSYGLAKQISVSNSEAENFLKSYFGK 801

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FP I +++ +   F R+NGYV+T+F R+ H+  IN    ++R   ERA INAPIQG+AAD
Sbjct: 802 FPEIRDFMNENITFCRKNGYVKTLFDRKCHFPNINDKNHTLRTFQERACINAPIQGTAAD 861

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + R AMI + K +   ++   +L+Q+HDEL+ E  E+++++  Q I H ME A  P +  
Sbjct: 862 LLRLAMIQIDKKISAKEIPASLLIQVHDELLLECKEKDVSSVQQKIAHEMENASEPLVKF 921

Query: 959 RVPLKVNIKVSNNWQE 974
            +PL V++K   NW E
Sbjct: 922 SIPLTVDVKSGKNWSE 937


>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
          Length = 933

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/983 (41%), Positives = 593/983 (60%), Gaps = 68/983 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DG+P+ A++GFCNML + +         +H A
Sbjct: 6   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGMPIGAVSGFCNMLQRYVDGDHGPDAPTHLA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF IP  E++G+EADDIIA
Sbjct: 66  VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRQATEAFNIPCKELEGYEADDIIA 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A K G  VTI+S+DKDLMQLV     + D +K ++ID E V +K+G+ PE++V +
Sbjct: 126 TLACQARKAGGRVTIVSSDKDLMQLVGDGVEMLDAMKNKRIDREGVFEKFGVYPERVVDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRR+ ++E  +   L
Sbjct: 186 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLETLLDRAEEIKQPKRRQTLIEKRDQIEL 245

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L    P+   L+ L L D +  +L+SFL  +EF  L  R+A     +   +EP 
Sbjct: 246 SKKLVQLDCKTPLDFTLDDLELRDPDPDKLLSFLAEMEFRTLSKRIA-----EKLGVEPP 300

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           V+                                                       + P
Sbjct: 301 VIADAPAPVA----------------------------------------ADDPPADETP 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   Y  + +   +++W+ +    G  +    T  ++   +  + I++           
Sbjct: 321 FDASKYECVRDAAALRKWIDQAHERGWLAVDTETTGLNEMVADLVGISLCIEPG------ 374

Query: 423 KVETIFIDLSVH--TSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474
             E  +I L+     S D  G + L +      E L  LK   E+   LKIG N+KYD  
Sbjct: 375 --EACYIPLTHRDGASDDLFGSDALAEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAK 432

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           +  RYG+ +   +D MLMSY + +G   H + ++++++L +T    K +L S KS+I  D
Sbjct: 433 IFARYGVDVAPIDDTMLMSYAMHAGEHGHGMDTLSERYLGHTPIPIKPLLGSGKSAITFD 492

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+   +   +A E++++ L+LW L +P+L   ++  VYE L++P++ V++QME+ GI++D
Sbjct: 493 KVPIDEATAYAAEDADITLRLWKLFKPQLHRVQVTTVYETLERPLVPVLAQMEMHGIKVD 552

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +D+L ++S   ++ + +LE  I++L+GE FN+ SP QLG+ILF K+    G K KTG++ 
Sbjct: 553 RDVLSRMSNAFAQKMAALEAEIHELAGETFNVGSPAQLGEILFEKMGLEGGKKGKTGKYS 612

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE +   ++ + + +L+WRQLSK+KSTY D+L  HIN  T RVHT Y++    TG
Sbjct: 613 TGADVLEDLAT-EHELPRKVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYAITGANTG 671

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RLAS +PNLQNIP++T+ G++IR AF++ P   L+S DYSQIELRILAHIA I  L Q F
Sbjct: 672 RLASTDPNLQNIPVRTEEGRRIREAFVAEPGNVLVSLDYSQIELRILAHIADIPALKQAF 731

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            + LDIH M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR+EA  +
Sbjct: 732 ADGLDIHAMTASEMFDVPLDEMTPEIRRKAKAINFGVIYGISGFGLARNLRIPRAEAQGF 791

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF RFPGI  Y++ T  F +++GYV+T+FGR+IH  EIN+ K        RAAINAP
Sbjct: 792 IDRYFERFPGIRRYMDDTIAFAKEHGYVQTLFGRKIHTPEINA-KGPHAGFARRAAINAP 850

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AAD+ RRAM+ + ++++   L  KMLLQ+HDEL+FEV E+ +    +I    ME A
Sbjct: 851 IQGTAADVIRRAMVRMPEAID--GLPAKMLLQVHDELLFEVAEDAVDQTIEIARDVMENA 908

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
             P + L V L V+     NW E
Sbjct: 909 PDPAVKLDVKLTVDAGKGANWAE 931


>gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193]
 gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193]
          Length = 935

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/986 (40%), Positives = 587/986 (59%), Gaps = 74/986 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++     +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+   +FRN++Y  YKANRP  PE L PQ PL R AT+AF I   E++GFEADDIIA
Sbjct: 68  VIFDHSGKSFRNDMYELYKANRPPAPEDLRPQFPLTRDATRAFNIACKEVEGFEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + A   G   TIIS+DKDLMQLV     + D +K ++ID E V +K+G+ P+++V +
Sbjct: 128 TLAHQARDAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKRIDSEGVHEKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++E  +   +
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAEEIKQPKRRQTLIEKRDQIEM 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L   + +   LE L + D +   L+ FL  +EF  L  R+A     +A  I  V
Sbjct: 248 SKRLVQLDCAMELDFSLEDLEVLDPDPEVLLGFLADMEFRTLTKRMADQLGREAPAIPEV 307

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                +T     A ET I                                          
Sbjct: 308 -----STSGGSAAPETPI---------------------------------------AVA 323

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS---------- 412
            + + Y  I +   +Q+W+ +    G  +    T  +DA     + +++           
Sbjct: 324 FDAEKYQCISDAAGLQEWIDQAYERGYVAIDTETTGLDAMVVDLVGVSLCVEPGTACYIP 383

Query: 413 -TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
            T  Q  D  F  E +           + G+  L ++ L  LK   E+   LKIG N+KY
Sbjct: 384 LTHKQGGDDLFGGEGL-----------AEGQMPL-EQALEMLKPMLEDPAVLKIGQNMKY 431

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           D  +LHRYGI +   +D MLMSY L +G  +H +  +++++L +     K +L + KS+I
Sbjct: 432 DAKILHRYGIDVAPIDDTMLMSYALHAGEHNHGMDILSERYLDHKPIPIKPLLGTGKSAI 491

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D++  +    +A E++++ L+LW   +P+L   ++  VYE L++P++ V+++ME  GI
Sbjct: 492 TFDRVPIADAVPYAAEDADITLRLWQHFKPELHQRQVTVVYETLERPLVPVLAEMERNGI 551

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D+D L ++S   ++ + +LE+ I+ L+G+ FN+ SPKQLG+ILF KL+ P G K KTG
Sbjct: 552 KVDRDTLSRMSNAFAQKMAALEDEIHALAGQPFNVGSPKQLGEILFDKLELPGGKKGKTG 611

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T A  LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT Y     
Sbjct: 612 AYATGADILEDLAT-EHALPALVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYIQTGA 670

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGR+AS +PNLQNIP++++ G++IR AF+      L+S DYSQIELRILAH+A I  L 
Sbjct: 671 NTGRMASSDPNLQNIPVRSEEGRRIREAFVPEQGNVLLSLDYSQIELRILAHVAGIDALK 730

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH M A+E+F V +E+++  +RR AK INF +IYGIS F LA  LRIPR+EA
Sbjct: 731 AAFAAGQDIHAMTASEMFDVPMEEMTADIRRQAKAINFGVIYGISGFGLARNLRIPRAEA 790

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I RYF RFPGI  Y+++T  F +++GYV+T+FGR+IH  EI + K       +RAAI
Sbjct: 791 QGFIDRYFERFPGIRAYMDRTVEFAKEHGYVQTLFGRKIHTPEIAA-KGPRAGFAKRAAI 849

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AAD+ RRAM+ +  ++    L  +MLLQ+HDEL+FEVPE  +    +     M
Sbjct: 850 NAPIQGTAADVIRRAMVKMPPAIA--HLPARMLLQVHDELLFEVPEAAVEETIETARRVM 907

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A  P ++L V L V+    NNW E
Sbjct: 908 ENAADPALHLDVKLSVDAGRGNNWAE 933


>gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62]
 gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62]
          Length = 932

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/985 (40%), Positives = 599/985 (60%), Gaps = 73/985 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + ++ +    + +H A
Sbjct: 6   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEGNAGSDV-THVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI G+EADDIIA
Sbjct: 65  VIFDKGSHTFRNDMYDQYKANRDAMPEDLRPQMPLTRRATEAFNIACHEIAGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    + + G   TIIS+DKDLMQLV     ++D +K   I +E V +K+G+ P+++V +
Sbjct: 125 TLARQSREAGGRCTIISSDKDLMQLVGGGVEMFDAMKNRTIGVEGVEEKFGVGPDRVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRR+++ +      L
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLETLLDRAEEIKQPKRRQSLTDNRAQIEL 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L + D     L++FL  +EF  L  R+A T   +A      
Sbjct: 245 SKRLVQLDLNTPLEFTLDDLEVRDPVPEDLLAFLAEMEFRTLTTRIANTLGAEAP----- 299

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
             DIN T                         +     ++  + P+              
Sbjct: 300 --DINDTP------------------------AAVAGAVDVPEAPE-------------- 319

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D Y  + +T  +Q W+ ++   G  +    T +++   ++ + I++         + 
Sbjct: 320 IDADQYEWVQDTDALQVWIDRIYERGYVAVDTETTSLNEMRAELVGISLCV------KAG 373

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +   I I+     + D  G + L +       +LS LK   +++  LKIG N+KYD  + 
Sbjct: 374 QACYIPINHKEGANDDLFGSDKLAEGQMAEAVVLSMLKPMLQDDSILKIGQNMKYDAKIF 433

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            R G+ +   +D MLMSY  ++G  +H + +++ + L +T    K +L + KS+I  D++
Sbjct: 434 ARCGVDVAPIDDTMLMSYAQNAGLHNHGMDTLSDRLLGHTPIPIKSLLGTGKSAITFDRV 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             ++  ++A E++++ L+LW  L+P+L V+ +  VYE L++P++ V+++ME+TGI++D+D
Sbjct: 494 DVAEAVKYAAEDADITLRLWQHLKPQLHVKGVTTVYETLERPLVPVLAEMEMTGIKVDRD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++S   ++ +  LE  I++L+G  FN+ SPKQLG+ILF ++    G K KTG + T 
Sbjct: 554 TLSRMSNAFAQKMAGLEAEIHELAGRSFNVGSPKQLGEILFDEMGIEGGKKGKTGAYATG 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  LE +   ++ +   +L+WRQLSK+KSTY D+L NHIN  T RVHT YS+A   TGRL
Sbjct: 614 ADVLEDLAI-EHELPGRVLDWRQLSKLKSTYTDALQNHINAETGRVHTSYSIAGANTGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIPI+++ G++IR AFI+   K L++ DYSQIELRILAH+A I  L Q F +
Sbjct: 673 ASTDPNLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVADIPSLKQAFAD 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH M A+E+F V +++++  +RR AK INF +IYGIS F LA  LRIPR EA  +I 
Sbjct: 733 GMDIHAMTASEMFDVPLDQMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRFEAQGFID 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF RFPGI  Y++ T  F +++GYV+T+FGR+I+  EI + K       +RAAINAPIQ
Sbjct: 793 RYFERFPGIRTYMDDTVAFAKEHGYVQTLFGRKINTPEIGA-KGPQAGFAKRAAINAPIQ 851

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP----EEEITTASQIIVHSME 949
           G+AAD+ RRAM+ +  ++ D     KMLLQ+HDEL+FEV     E+ I TA  +    ME
Sbjct: 852 GTAADVIRRAMVRMPDAIADQP--AKMLLQVHDELLFEVENGAQEKLIETARDV----ME 905

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A +P + L V L  +     NW E
Sbjct: 906 NAAMPAVKLDVTLTADAGEGQNWAE 930


>gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1]
 gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1]
          Length = 929

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/983 (41%), Positives = 598/983 (60%), Gaps = 71/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL LVDGS+FI+RA++A P L+RK DGLP+ A+AGFCNML K+++ +      +H A
Sbjct: 5   KGHHLHLVDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHKMIEGNTGPDAPTHAA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF +  IE++GFEADDIIA
Sbjct: 65  VIFDKGSHTFRNDLYDQYKANRDAMPEDLRPQIPLTRDATRAFNLACIEMEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY  +A + G   TIIS+DKD+MQLV     ++D +K  +ID E V  K+G+ PE++V +
Sbjct: 125 TYARMAREAGGRCTIISSDKDMMQLVGDGVEMFDAMKNTRIDREGVEAKFGVGPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L  A  IKQ KRR+ ++++A+  RL
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLDRAEEIKQPKRRQTLIDHADQIRL 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-P 301
           SR+LV+L  +V +   L+ L + + +   L++FL  +EF  L  R+A     D+A +E P
Sbjct: 245 SRQLVLLDENVELEDGLDALDVREPDHDTLLAFLAEMEFRTLTKRIA-----DSAGVEAP 299

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V+ +              ID                                     ++Y
Sbjct: 300 VIEEPAPEAAPDAPEMPPIDH------------------------------------AKY 323

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            + ND        K +Q WV +    G  +F   T +++   ++ + +++    +     
Sbjct: 324 EVVND-------VKTLQAWVDRAVVRGEVAFDTETTSLNEMTAELVGVSLCI--EPGAAC 374

Query: 422 F-------KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +         + +F D S+   Q          + +  L+   E+   +K+  N KYD  
Sbjct: 375 YIPLLHRGGGDDLFADTSLAEGQ------IPFDDAMEILQPMLEDRSVMKVAQNAKYDVK 428

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           VL  YG+ +   +D ML+SY L +G  +H +  +A+++L +T    K ++ S KS I  D
Sbjct: 429 VLANYGVEVAPIDDTMLLSYALHAGLHNHGMDGLAERYLGHTPLPIKSLIGSGKSQITFD 488

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           ++  +    +A E++++ L+   L +PKL    +  VYERL++P++ V+++ME +GI++D
Sbjct: 489 RVPIADAAPYAAEDADITLRFHKLFKPKLHQVGVTKVYERLERPLVPVLARMERSGIKVD 548

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +D+L ++S   ++ +  LE  I++L+GE FN+ SP QLG+ILF K+    G K KTG++ 
Sbjct: 549 KDVLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPAQLGEILFDKMGLQGGKKGKTGKYS 608

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TG
Sbjct: 609 TGADILEDLAT-EHDLPGRVLDWRQLSKLKSTYTDALQDHINADTGRVHTSYSIAGANTG 667

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RLAS +PNLQNIPI+++ G++IR AF++ P K L++ DYSQIELRILAHIA I  L   F
Sbjct: 668 RLASTDPNLQNIPIRSEEGRRIREAFVAEPGKVLVALDYSQIELRILAHIAGIDALKDAF 727

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++  DIH   A+E+F V +E+++P +RR AK INF +IYGIS F LA  LRIPR+EA  +
Sbjct: 728 KDGQDIHAATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGF 787

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF RFPGI  Y++ TK F ++N YV+T+FGR+IH  EIN+ K        RAAINAP
Sbjct: 788 IDRYFERFPGIRTYMDDTKKFAKENLYVQTLFGRKIHTPEINA-KGPGAGFAGRAAINAP 846

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI RRAMI +  ++E   +  KMLLQ+HDELVFEV E+   T        ME A
Sbjct: 847 IQGTAADIIRRAMIRMEDAIE--GIPAKMLLQVHDELVFEVDEDATDTLIARAREVMEGA 904

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
             P ++L VP+ V+      W E
Sbjct: 905 ADPAVHLSVPITVDAGQGETWAE 927


>gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114]
 gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114]
          Length = 925

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/981 (40%), Positives = 610/981 (62%), Gaps = 65/981 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M KE HLFL+DGS +I+RA+YA P L+RK DGLPV A++GFCNML+  L+ ++  +    
Sbjct: 1   MSKEKHLFLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCNMLYSFLEKAKAGNTMDT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFD     FRN+IY DYK NR   PE L+PQ   +R A +AF +P+IE+  +EA
Sbjct: 61  PTHLAVIFDSARKNFRNDIYKDYKGNRSDAPEDLIPQFDYIRKAVKAFNLPSIEMLNYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   A+K+   +TI+S+DKDLMQLV   T + DT+K+  I IE V +K+G+PPE
Sbjct: 121 DDLIATYKEKAKKKKIKITIVSSDKDLMQLVDKETFMLDTMKDRHIGIEEVKEKFGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ +Q+L GDS+DNIPG+PGIG KTAA L+ ++G+L+ +L  A  IKQ KRR+ +L+  
Sbjct: 181 KVIDVQSLAGDSVDNIPGVPGIGVKTAAELINQFGSLDELLKKADTIKQPKRRQTLLDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A +SR+LV L+ DVPI   +E  IL+  +  ++ +FL  +EF+K+   +  TY     
Sbjct: 241 KNALISRELVTLKCDVPIKEEIEDFILKPLDKEKIFNFLDEMEFSKIKKSIEQTY----- 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G + +T   ++T                     TPQK      +K
Sbjct: 296 ---------------GKSSDTLTKKETA--------------------TPQKT---NNKK 317

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S + I       I   ++++  +++ +  G  +    T+++++  +  + I+++  +  
Sbjct: 318 ESGFHI-------IYEAQELEDLLKQADNQGYFAIDTETNSLNSQKADLVGISLAINEN- 369

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  E  ++ +     QD   K  +  KE++  LK + E+E   K+G NIKYD  + 
Sbjct: 370 -------EAYYVPVGHKNKQDPNLKKQIKIKELVKVLKPYLEDETVKKVGQNIKYDLKIF 422

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            +YGI ++ FED ML+SY LD+G + H++  +A+  L +     K+++ + KS +  D++
Sbjct: 423 LKYGIELKSFEDTMLLSYSLDAGVNRHNLDLLAKTHLDHDNIKFKDVVGTGKSEVTFDEV 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                  +A E+++V L+L+ L + +++ EK   +YE L+ P++DV+++ME  GI+IDQ 
Sbjct: 483 LIDNAYRYACEDADVTLKLYNLFKDRIVKEKCFQIYETLEIPLVDVLARMENNGIKIDQV 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +LK++S   S +L +LE+ IY LSGE+FN++S KQLGDIL+ KLK     KTK G + T 
Sbjct: 543 ILKKLSNSFSADLKTLEKKIYKLSGEEFNIASTKQLGDILYEKLKISGTKKTKKGNFATN 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              LE +    N   K +LEWRQ SK+K+TY DSLP +I+K T+R+HT + LA+T TGRL
Sbjct: 603 VNVLEDLASKGNEFPKLVLEWRQKSKLKNTYTDSLPEYIDKNTKRIHTSFLLAATSTGRL 662

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIPIK+  G+ IR AF+S     +ISADYSQIE+R+LAH+A +  L + F+N
Sbjct: 663 ASADPNLQNIPIKSKEGKLIRSAFVSEKGSSIISADYSQIEMRVLAHVADVKELKKAFKN 722

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIH + A++IF  +I+K++  MRR AK INF IIYGIS + LA Q+ +   EA  ++ 
Sbjct: 723 NEDIHNITASQIFECDIKKINEDMRRKAKAINFGIIYGISSYGLAKQISVSNPEAEQFLF 782

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF +FP I +Y+++T  F R+NG+V+T+F R+ H+  IN    ++++  ERAAINAPIQ
Sbjct: 783 SYFKKFPEIRDYMQETLEFCRKNGFVQTMFNRKCHFPNINDKNHTLKSFQERAAINAPIQ 842

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI R AMI++ K +   K+ +++L+QIHDEL+ E  + ++    Q I + ME A  
Sbjct: 843 GAAADIIRFAMINIDKKILSKKIKSRLLVQIHDELLLETKDMDLKKEIQKIKNEMENAID 902

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
              N  VPL V+   + NW +
Sbjct: 903 GDYNFSVPLIVDANSAKNWND 923


>gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
 gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
          Length = 937

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/984 (41%), Positives = 593/984 (60%), Gaps = 74/984 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H AVIF
Sbjct: 11  HLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVAVIF 70

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +GFEADDIIAT  
Sbjct: 71  DKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEQEGFEADDIIATLA 130

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +QAL
Sbjct: 131 CQARDAGGRVTIISSDKDLMQLVGGGVEMLDAMKNKRIDTDGVFEKFGVGPDRVVDVQAL 190

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRR+ ++E      LS++
Sbjct: 191 AGDSVDNVPGAPGIGIKTAALLINEYGSLEDLLNRAEEIKQPKRRQTLIENRAQIELSKQ 250

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  ++ +   L+ L + D +   L+SFL  +EF  L  RVA     +A    P ++D
Sbjct: 251 LVQLDNNMELDFTLDDLGVRDPDADHLLSFLAEMEFRTLSKRVADQLGKEA----PAIVD 306

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                              +  T++ ++++D                         P ++
Sbjct: 307 APAQ---------------STDTAEAATVAD------------------------MPFDS 327

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            SY  + +   +++WV ++   G  +    T   D      + I++     +        
Sbjct: 328 SSYECVRDAGALKKWVIQIRERGWVAVDTETTGFDEMVVDLVGISLCVEPGR-------- 379

Query: 426 TIFIDLS--VHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             +I L+    +S D  G + L       ++ L  LK   E+   LKIG N+KYD  +  
Sbjct: 380 ACYIPLTHKSGSSDDLFGSDDLADGQMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFA 439

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           R GI +   +D MLMSY + +G+  H + ++++++L++T    K +L + KS+I  D++ 
Sbjct: 440 RRGIDVAPIDDTMLMSYAMHAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVP 499

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                 +A E++++ L+LW L +P+L    +  VYE L++P++ V+++ME  GI++D+D 
Sbjct: 500 IDDAVAYAAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDT 559

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S   ++ +  LE  I++L+G+ FN+ SPKQLG+ILF KL    G K KTG + T A
Sbjct: 560 LSRMSNAFAQKMAGLEAEIHELAGQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGA 619

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT Y      TGRLA
Sbjct: 620 DILEDLAT-EHALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGANTGRLA 678

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+++ G++IR AF+      L++ DYSQIELRILAH+A I  L Q F   
Sbjct: 679 STDPNLQNIPIRSEEGRRIREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEG 738

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A+E+F V +E+++  +RR AK INF +IYGIS F LA  LRIPR+EA  +I R
Sbjct: 739 QDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDR 798

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI  Y+++T  F +++G+V+T+FGR+IH  EI S K       +RAAINAPIQG
Sbjct: 799 YFERFPGIRRYMDETVAFAKEHGHVQTLFGRKIHTPEI-SAKGPRAGFAKRAAINAPIQG 857

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP----EEEITTASQIIVHSMEK 950
           +AAD+ RRAMI +  ++    L  +MLLQ+HDEL+FEVP    E+ I TASQ+    ME 
Sbjct: 858 TAADVIRRAMIRMPAAIA--HLPARMLLQVHDELLFEVPEAAVEDTIETASQV----MET 911

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A  P ++L V L V+     NW E
Sbjct: 912 AADPAVHLDVKLVVDAGRGQNWAE 935


>gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
 gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
          Length = 994

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/982 (41%), Positives = 586/982 (59%), Gaps = 46/982 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+D S++I+RA++A P L+RK DGLPV A+ G+CNMLWKLL++ +     +H A IFD
Sbjct: 47  LWLIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGADGPTHLAAIFD 106

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +   TFRN +Y  YKANR   PE L+PQ PLVR AT+AFG+  +E+ G+EADD+IATY  
Sbjct: 107 HSEKTFRNALYDQYKANRSAPPEDLVPQFPLVRDATRAFGVHCVELPGYEADDLIATYAC 166

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
                G    I+S+DKDLMQL+ P+  ++D +K+ ++  + V++K+G+ P+KM+ LQAL 
Sbjct: 167 KVRDAGGECVIVSSDKDLMQLIGPSVVMWDPMKDRRLAEDAVMEKFGVTPDKMIDLQALI 226

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG PGIG KTAA LL EYG+L+ +L  A  IKQ KRRE ++ + +   LSR+L
Sbjct: 227 GDSVDNVPGAPGIGPKTAAQLLDEYGDLDTLLERAGEIKQPKRRETLINFRDQILLSRQL 286

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L  D P   P++   + D +   L  FL+ +EF  L+ RV                D 
Sbjct: 287 VRLTCDAPAPEPIDDFRVRDPDPQTLADFLETMEFRSLLRRVG---------------DG 331

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
               + G          +    ++ + LS     I+    PQ +  + ++K S   +++D
Sbjct: 332 KLAGHDG----------SAFAPARPAPLS--APVISPRYAPQAVSAD-VEKQS---VDHD 375

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF---- 422
           +Y  I +  D+  ++ +    G   F   TD + A H+    ++++     +D  +    
Sbjct: 376 AYHCIRDLADLDAFIARATEAGVVGFDTETDALSATHAGLCGVSLAI--GPNDACYVPLT 433

Query: 423 ----KVETIF-IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                VE    +D    T             +L+ LK   E+   LK+  N KYD  V+ 
Sbjct: 434 HEHPPVEGAGGLDFGGDTDARPPLDQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMA 493

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           R GI +   +D ML+SYVL+ G   H +  +++  L +     K +  + K+      + 
Sbjct: 494 RRGIRVAPIDDTMLISYVLEGGLHGHGMDELSRLHLGHEPIPFKSVAGTGKAQKSFKHVE 553

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                 +A E+++V L+LW +L+P+L  E+L  VYE L++ M  V++ ME+ GI++D   
Sbjct: 554 LKPATCYAAEDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPAR 613

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+++S+E    +  LE   ++++G  FN+ SP+Q+G+ILF +L  P G KT +GQW+T A
Sbjct: 614 LRRLSSEFGLRMAELEAQAHEIAGRPFNVGSPRQIGEILFGELNLPGGKKTASGQWETGA 673

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +    + + + +L+WRQLSK+K TY D+L   ++ +T RVHT Y LA+  TGRLA
Sbjct: 674 ATLEGL-AETHALPRVLLDWRQLSKLKGTYTDALVAAMDPQTDRVHTSYQLAAATTGRLA 732

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T+ G++IR+AFI+     LISADYSQIELR+LAHI  I  L + F+  
Sbjct: 733 SSDPNLQNIPIRTETGRQIRQAFIAKDGHVLISADYSQIELRLLAHIGDIPELKRAFKAG 792

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A+E+FGV +  + P+ RR AK INF I+YGIS F LA QL I + EA  YIK 
Sbjct: 793 IDIHTATASEMFGVPVADMDPETRRRAKAINFGIVYGISAFGLANQLGIDQGEAGAYIKT 852

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI  Y++ T+  VR  G+V T+FGR+IH   I S   + R   ERAAINAPIQG
Sbjct: 853 YFERFPGIRTYMDATRAEVRSLGFVSTVFGRKIHIPAIASKSGAERQFGERAAINAPIQG 912

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +LE   L TKMLLQ+HDELVFE PE E+  A  +I   ME A  P
Sbjct: 913 AAADIIRRAMIRMPGALEAAGLETKMLLQVHDELVFEAPEAEVEAAIPLIKRIMEGAAEP 972

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            + L VPL V+ + + NW E +
Sbjct: 973 AVALSVPLVVDARAAKNWDEAH 994


>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
 gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
          Length = 936

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/986 (41%), Positives = 588/986 (59%), Gaps = 76/986 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A++GF NML + ++N+     A+H A
Sbjct: 7   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFVNMLQRYVENNSGADAATHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E++GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDQYKANREAMPEELRPQIPLTRDATRAFNIACEEVEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + A + G  VTI+S+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +
Sbjct: 127 TLAHQARRAGGRVTIVSSDKDLMQLVGDGVEMLDPMKNKRIDRDGVFEKFGVFPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE++L  A  I Q KRRE ++ +     L
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLESLLERAGEITQPKRRETLVNHRAQIEL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D+ +   L+ L +   +   L++FL  +EF  +  R+A      A    PV
Sbjct: 247 SKRLVQLDCDMVLDFGLDDLEIRLPDPDTLLAFLAQMEFRTVSKRIADKLGVAA----PV 302

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           +      E    A ET                                       +   P
Sbjct: 303 I------EAPAPATET-------------------------------------APIEAVP 319

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + DSY  + +   +Q W+ ++   G  +    T ++D   +  + I++           
Sbjct: 320 FDADSYECVRDATALQVWIDRIYEAGHVAVDTETTSLDEMRADLVGISLCVA-------- 371

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE-------ILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +  +I L+     D    +    E        L+ LK   E+   LKIG N+KYD  +
Sbjct: 372 AGQACYIPLAHKAGADDLFGSDARAEGQMDMAACLAMLKPVLEDASILKIGQNMKYDAKI 431

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
               GI++   +D MLMSY + +G  +H + ++++++L +     K +L S KS+I  D+
Sbjct: 432 FALLGIAVAPIDDTMLMSYAMHAGLHNHGMDTLSERYLGHIPIPIKPLLGSGKSAITFDR 491

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +      ++A E+++V L+LW + +P+L   ++  VYE L++P++ V++QME+ GI++D+
Sbjct: 492 VPVDDAVKYAAEDADVTLRLWQMFKPQLHQSRVTTVYETLERPLVPVLAQMEMHGIKVDR 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSG---AKTKT 647
           D L ++S   ++ +  LE+ I  ++G  FN+ SPKQLG+ILF +L    P G   AK KT
Sbjct: 552 DTLSRMSNAFAQKMAGLEDEIQKMAGRPFNVGSPKQLGEILFDELGLAMPDGKLPAKGKT 611

Query: 648 GQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           G + T A  LE +    D P  + IL+WRQL+K+KSTY D+L +HIN  T RVHT YS+A
Sbjct: 612 GAYSTGADVLEDLATIHDLP--RRILDWRQLAKLKSTYTDALQDHINPDTGRVHTSYSIA 669

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRLAS +PNLQNIP+++D G++IR AF++ P   ++S DYSQIELRILAHIA I  
Sbjct: 670 GAITGRLASTDPNLQNIPVRSDEGRRIREAFVAAPGNVIVSLDYSQIELRILAHIAGIDA 729

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L Q F + +DIH M A+E+F V +++++P +RR AK INF +IYGIS F LA  LRIPRS
Sbjct: 730 LKQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRS 789

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I RYF RFPGI +Y++ T  F R  GYV+T+FGRRI+  EIN+ K       +RA
Sbjct: 790 DAQGFIDRYFERFPGIRQYMDDTVAFARDRGYVQTLFGRRINTPEINT-KGPQAGFAKRA 848

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQG+AAD+ RRAMI + K++    L  KMLLQ+HDEL+FEV          I   
Sbjct: 849 AINAPIQGTAADVIRRAMIRMPKAIA--GLPAKMLLQVHDELLFEVDATAADDLIGIARQ 906

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972
            ME A  P + L V L V+     NW
Sbjct: 907 VMETASDPAVKLDVKLSVDAGQGPNW 932


>gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
 gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
          Length = 949

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/988 (40%), Positives = 592/988 (59%), Gaps = 64/988 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +GFEADDIIA
Sbjct: 68  VIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEQEGFEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +
Sbjct: 128 TLACQARDAGGRVTIISSDKDLMQLVGGGVEMLDAMKNKRIDSDGVFEKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++E  E   L
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAEEIKQPKRRQTLIEKREQIEL 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L +++ +   L+ L + D +   L+SFL  +EF  L  RVA     +A    PV
Sbjct: 248 SKKLVQLDSNMELGFSLDDLGVRDPDADTLLSFLAEMEFRTLSKRVAEQLGKEA----PV 303

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + D                   +   +   +LS                      ++  P
Sbjct: 304 IADAPAAA-------------PSGGAAPADALS----------------------VADLP 328

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +  +Y  + + + +Q W+ ++   G  +    T  +D   +  + I+++      +   
Sbjct: 329 FDASAYECVRDAEALQVWINQIRERGWVAVDTETTGLDEMKADLVGISLAV-----EPGA 383

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                    +   S D  G +TL +        LS LK   E+   LKIG N+KYD  + 
Sbjct: 384 ACYIPLAHKAEAGSDDLFGSDTLAEGQMDFATALSMLKPVLEDPAILKIGQNMKYDAKIF 443

Query: 477 HRY-------GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
            R        GI++  ++D ML+SY L +G+  H + ++++++LS++    K +L + KS
Sbjct: 444 RRQHGAGFEDGITVAPYDDTMLLSYALFAGQHGHGMDTLSERYLSHSPIPIKSLLGTGKS 503

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +I  D++  +    +A E++++ L+LW L +P+L  +++  VYE L++P+  V+++ME+ 
Sbjct: 504 AITFDRVPIADAVAYAAEDADITLRLWKLFKPQLHQQRVTTVYETLERPLSPVLAKMEME 563

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+++D+D L ++S   ++ + +LE  I++L+GE FN+ SPKQLG+ILF K+    G K K
Sbjct: 564 GVKVDRDTLSRMSNAFAQKMAALESEIHELAGETFNVGSPKQLGEILFDKMGLEGGKKGK 623

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T A  LE +   ++ +   +L+WRQLSK+KSTY D+L +HI+  T RVHT Y   
Sbjct: 624 TGAYATGADILEDLAT-EHDLPARVLDWRQLSKLKSTYTDALQDHIHPETGRVHTSYVQT 682

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRLAS +PNLQNIPI+++ G++IR AF++     L++ DYSQIELRILAH+A I  
Sbjct: 683 GANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDYSQIELRILAHVAGIDT 742

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L Q F    DIH + A+E+F V + +++P +RR AK INF +IYGIS F LA  LRIPR+
Sbjct: 743 LKQAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRA 802

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  +I RYF RFPGI  Y++ T  F +++GYV+T+FGR+IH  EI + K       +RA
Sbjct: 803 EAQGFIDRYFERFPGIRRYMDDTVAFAKEHGYVQTLFGRKIHTPEI-AAKGPRAGFAKRA 861

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQG+AAD+ RRAMI + +++    L  +MLLQ+HDEL+FEVPE       +    
Sbjct: 862 AINAPIQGTAADVIRRAMIRMPEAIA--HLPARMLLQVHDELLFEVPESAAEDTIEAARK 919

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME A  P ++L V L  +     NW E
Sbjct: 920 VMESAADPAVHLDVKLVADAGQGKNWAE 947


>gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
 gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
          Length = 937

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/980 (40%), Positives = 590/980 (60%), Gaps = 66/980 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H AVIF
Sbjct: 11  HLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVAVIF 70

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +GFEADDIIAT  
Sbjct: 71  DKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEQEGFEADDIIATLA 130

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +QAL
Sbjct: 131 CQARDAGGRVTIISSDKDLMQLVGGGVEMLDAMKNKRIDTDGVFEKFGVGPDRVVDVQAL 190

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRR+ ++E      LS++
Sbjct: 191 AGDSVDNVPGAPGIGIKTAALLINEYGSLEDLLNRAEEIKQPKRRQTLIENRAQIELSKQ 250

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  ++ +   L+ L + D +  +L+SFL  +EF  L  RVA     +A    P ++D
Sbjct: 251 LVQLDNNMELDFTLDDLGVRDPDADQLLSFLAEMEFRTLSKRVADQLGKEA----PAIVD 306

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                              +  T++ ++++D                         P ++
Sbjct: 307 APAQ---------------STDTAEAATVAD------------------------MPFDS 327

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            SY  + + + +++WV ++   G  +    T   D      + I++              
Sbjct: 328 SSYECVRDAEALKKWVIQIRERGWVAVDTETTGFDEMVVDLVGISLCVEPGS-------- 379

Query: 426 TIFIDLS--VHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             +I L+    +S D  G + L       ++ L+ LK   E+   LKIG N+KYD  +  
Sbjct: 380 ACYIPLTHKSGSSDDLFGSDDLADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFA 439

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           R GI +   +D MLMSY + +G+  H + ++++++L++T    K +L + KS+I  D++ 
Sbjct: 440 RRGIDVAPIDDTMLMSYAMHAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVP 499

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                 +A E++++ L+LW L +P+L    +  VYE L++P++ V+++ME  GI++D+D 
Sbjct: 500 IDDAVAYAAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDT 559

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S   ++ +  LE  I++L+G+ FN+ SPKQLG+ILF KL    G K KTG + T A
Sbjct: 560 LSRMSNAFAQKMAGLEAEIHELAGQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGA 619

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT Y      TGRLA
Sbjct: 620 DILEDLAT-EHALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGANTGRLA 678

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+++ G++IR AF+      L++ DYSQIELRILAH+A I  L Q F   
Sbjct: 679 STDPNLQNIPIRSEEGRRIREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEG 738

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A+E+F V +E+++  +RR AK INF +IYGIS F LA  LRIPR+EA  +I R
Sbjct: 739 QDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDR 798

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI  Y+++T  F +++G+V+T+FGR+IH  EI S K       +RAAINAPIQG
Sbjct: 799 YFERFPGIRRYMDETVAFAKEHGHVQTLFGRKIHTPEI-SAKGPRAGFAKRAAINAPIQG 857

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ RRAMI +  ++    L  +MLLQ+HDEL+FEVPE  +    +     ME A  P
Sbjct: 858 TAADVIRRAMIRMPAAIA--HLPARMLLQVHDELLFEVPEAAVEDTIETARQVMETAADP 915

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            ++L V L V+     NW E
Sbjct: 916 AVHLDVKLVVDAGRGQNWAE 935


>gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 921

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/972 (41%), Positives = 579/972 (59%), Gaps = 68/972 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-SHFAVI 64
           HL L+DGS +I+RA++  P L+ K  GLP  A+ GF  MLWKL++N RK+  A +HFAVI
Sbjct: 9   HLILIDGSGYIFRAYHRLPPLTNKA-GLPAGAVYGFTTMLWKLVENIRKQDDAPTHFAVI 67

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    +FR ++YP YKA+RP  PE L+PQ PL+R AT+AF +P+IE +G EADDIIA Y
Sbjct: 68  FDSSRKSFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDIIACY 127

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           + +A + GF VT+ S+DKDLMQL+ P   L+D V    I  E V+KK+G+ PEK+  L A
Sbjct: 128 SRVALERGFQVTVYSSDKDLMQLIQPRLNLFDPVNNCLIGSEQVVKKFGVVPEKLGDLLA 187

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PG+G KTA+ L+ EYGNL  IL +A  IKQ K R+N++EY ETA LSR
Sbjct: 188 LMGDSADNIPGVPGVGPKTASRLINEYGNLSEILESAPEIKQPKLRQNLIEYKETAILSR 247

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV L  D P+  PL++L+++  +   L  FL    F+ L+ R                 
Sbjct: 248 ELVALVDDKPLPEPLDNLVVKGVDMTPLRDFLSEQGFSSLLARAGG-------------- 293

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                    Q + ++D + ++ +               S    +
Sbjct: 294 ------------------------GQSAPVADGSKEMAAS--------------SSQSFD 315

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            D+Y  +++ K + +W+  +   G  +    TD +DA  ++ + +++ST       + K 
Sbjct: 316 PDAYETVIDEKALDRWIADIYQKGQVAVDTETDNLDATQARLVGVSLST------EAGKA 369

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             I      H   D          ++  LK   E+   LKIG NIKYD +VL RYGIS++
Sbjct: 370 CYIPCGHGGHDLLDQKPDQMDLSLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRYGISVQ 429

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
            F+D ML+SY LD+GR  H +  ++  +  +   + K +  + KS+I  + +       +
Sbjct: 430 PFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAATRY 489

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++++  +LW LL+P+L  +    +YE +D+P+  V+++ME  GI +D   L  +S+ 
Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            + ++  LEE IY L+G +F +SSPKQLG++LF  +    G K+K+GQ+ T   +LE++ 
Sbjct: 550 FAHDISRLEEEIYVLAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLA 609

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   ILEWRQLSK+KSTY+D+L   +N  T RVHT +SL    TGRL+S +PNLQ
Sbjct: 610 AEGEVIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRLSSTDPNLQ 669

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T++G++IR AFI+     L+SADYSQIELR+ AH+A    L Q F+   DIH + 
Sbjct: 670 NIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHALT 729

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A ++FG     V  + R  AKTINF+I+YGIS + LA +L I R  A + I RYF RFP 
Sbjct: 730 AKQLFG----HVDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYFERFPA 785

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  YI++T +FVR +GYVET FGR+ H   I S K + R   ER AINAPIQG +ADI +
Sbjct: 786 IRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMSADIIK 845

Query: 902 RAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           RAM+ +  +L    L++ KMLLQ+HDEL+FEVPEE+I  A  +I   M +A LP + L V
Sbjct: 846 RAMVRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSV 905

Query: 961 PLKVNIKVSNNW 972
            L+V I    +W
Sbjct: 906 DLEVEIGTGTSW 917


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1004 (40%), Positives = 590/1004 (58%), Gaps = 76/1004 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++  L L+DGS +I+RAF+A P+++R  DG PVNA+ GF +ML KL+ +     +  H A
Sbjct: 15  QKARLLLIDGSGYIFRAFHALPMMTRA-DGTPVNAVYGFTSMLMKLVDDM----MPDHVA 69

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR++IYPDYKANR   PE L+PQ  LVR AT A  +P +E  GFEADD+IA
Sbjct: 70  VVFDTSRQTFRSDIYPDYKANRLAPPEDLIPQFALVREATTALSLPMMEASGFEADDLIA 129

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY  +AE       I+S+DKDLMQLV     + D +K+ +I    V +K+G+ P+K+V +
Sbjct: 130 TYAALAETANMETIIVSSDKDLMQLVRGNVTMLDPMKQRRIGAAEVEEKFGVTPDKVVDV 189

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS DN+PG+PGIG KTAA L+  YG+LE++L  A  IKQ KRREN++ +AE AR+
Sbjct: 190 QALAGDSSDNVPGVPGIGVKTAAELINIYGDLESLLACADEIKQPKRRENLIAFAEQARI 249

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL----EFTKLINRVATTYDCDAAN 298
           SR+LV+LR D P   PLE   ++    PR +  LKA     +F +L+ R+  + D     
Sbjct: 250 SRQLVLLREDAPT--PLEMGAMK--TPPRNMDVLKAFLVEQDFKRLLVRIGASADAADKV 305

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P V  +  T      + T  ++D T K S  +++ D  S  N E              
Sbjct: 306 SNPAVRSMGGT------LSTNANQDQTAKDSAMATIHDAQSLRNIEA------------- 346

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    YT I + + +  ++ K    G  +    T  ++A     + I+++      
Sbjct: 347 --------DYTLITDREALVSFLGKARKQGFLAVDTETTGLNASAVDLVGISMAIAPG-- 396

Query: 419 DTSFKVETIFIDLSVHTSQDST-GKNTLTKEILSY--------------------LKKFF 457
                 +  +I L    + DS  G     +  L++                    +K  F
Sbjct: 397 ------QACYIPLRHGATNDSAVGSGVAVQGGLNFSDDDTPAHYPQLDFETAMAEIKPLF 450

Query: 458 ENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGR-SSHDIASIAQKWL 513
           E+   LKIGHN+KYD  VL R    GI++   +D M +SYVLD GR   H +  +A  WL
Sbjct: 451 EDPAVLKIGHNLKYDAHVLMRPRNGGINLAPVDDTMCLSYVLDGGRVERHSMDYLAGHWL 510

Query: 514 SYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            YT     ++       IP  +++     ++A E++++ L+LW++L+P+L  EK+  VYE
Sbjct: 511 DYTTIKFSDVCGKGAKQIPFSELAPEAALDYAAEDADITLRLWMILKPRLAGEKVASVYE 570

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
           RL++P+I V++QME  GI +D+ +L ++S + +  + +L ++I  L+GE FN++SPKQLG
Sbjct: 571 RLERPLIPVLAQMENYGITVDRSILARMSNDFATRMEALAQDILALAGEDFNIASPKQLG 630

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           +ILF K+    G K KTG + T+A  LE +      I   +L+WR L+K+KSTYAD+L  
Sbjct: 631 EILFDKMGLQGGKKAKTGAYSTSADVLEDLAASGVEIASKVLDWRHLAKLKSTYADALVE 690

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            I   T RVHT +S+    TGRL+S +PN+QNIPI+T  G++IR AFI+    KLIS DY
Sbjct: 691 CILPATGRVHTSFSMVGASTGRLSSSDPNVQNIPIRTSEGRQIRTAFIAAEGCKLISVDY 750

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR++AH+A    + + F++ +DIH   A+E+FG+ ++++  + RR AK INF IIY
Sbjct: 751 SQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSETRRRAKAINFGIIY 810

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS F LA QL IP+ EA DYI  YF  FPGI  Y+E+ K   R++G+VET+FGRRIH  
Sbjct: 811 GISAFGLARQLSIPQGEARDYIASYFENFPGIRAYMERIKTEAREDGFVETLFGRRIHIT 870

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            +    ++ R   ER AINAPIQGSAADI +RAMI +  +L+   +   MLLQ+HDEL+F
Sbjct: 871 GMAGGSAAHRGFAERQAINAPIQGSAADIIKRAMIRIPPALQAADIRADMLLQVHDELIF 930

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E P  +   A + I   ME A  P ++L+VPL     ++++W +
Sbjct: 931 EAPAADADNAVKHITRIMEAAAAPVVDLKVPLVAEAGIADSWAD 974


>gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 924

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/980 (41%), Positives = 608/980 (62%), Gaps = 71/980 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR-KESIA- 58
           ++K +H +L+DGS +I+RA+YA P L+RK DGLPV A++GFC+ML+KLL++S+  E++  
Sbjct: 4   IKKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCSMLFKLLEDSKSNENLQK 63

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD    TFRNEIY DYKANR + P+ L PQ   +R +  AF +P++++  +EA
Sbjct: 64  PTHFAVIFDAARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVVAFNLPSVDLPNYEA 123

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY      +G  VTI+S+DKDLMQL      ++D +K + I  E ++ K+G+ PE
Sbjct: 124 DDLIATYVEQILAKGAKVTIVSSDKDLMQLYRKDVRIFDPMKNKFITPEDIVTKFGVGPE 183

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ +Q+L GDS DN+PG+PGIG KTAA L+ +YG LE +L NA  IKQ KRRE ++E  
Sbjct: 184 KVIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLDNAQEIKQNKRRETLIENK 243

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A +S+KLV L  D P+   LE   L+  +  +L  FL+ +EF +L++ V + Y     
Sbjct: 244 DKAIISKKLVTLMKDAPVERKLEEFHLKKIDKNKLYKFLREMEFNRLLSSVISAYG---- 299

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             EP++                                ++T+K   E  P+K        
Sbjct: 300 --EPLL--------------------------------EETAK---ETKPEK-------- 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I N K+I +W+ + E  G  +    T ++DA  +  + I++ST   K
Sbjct: 315 -KHQNISKKNYHLITNEKEIDEWINEAEEAGELAIDTETSSLDAHQTDLVGISLSTKIGK 373

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     +I +  H  +    K T+ K+    LK   E++   KIG NIK+D +VL+
Sbjct: 374 --------ACYIPIG-HKFKGCLKKETVIKK----LKPLLEDKSVKKIGQNIKFDFIVLY 420

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           ++GI+M   ED MLMSYVLD+G++ H++ ++++  L +   + KEI+ + K  I    + 
Sbjct: 421 KHGINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQHKTISFKEIVGTGKKEINFSDVE 480

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +  E+A E++++  +L+ +    L +EKL ++YE  +KP+I +++ MEI GI+ID   
Sbjct: 481 LDKAMEYAAEDADITYRLYKIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKF 540

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK +S +  K +  LE+ ++ +S +KFN++SPKQLG+I++  LK     KT+ G + T A
Sbjct: 541 LKVLSEKFEKKISKLEKEVFKISKKKFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNA 600

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +    +   K IL+WRQ+SK+K+TY+D+LP HIN  T+RVHT + LA+T TGRLA
Sbjct: 601 SVLEDLAFKGHEFPKLILDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLA 660

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPIK++ G+ IR+AFI+     LISADY+QIE+RILA +A++  L + F N+
Sbjct: 661 SSDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNN 720

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A+++F V+I+KV   MRR AK INF IIYGIS + LA Q+ +   EA +++  
Sbjct: 721 EDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNA 780

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF +FP I  Y++ T  F R++GYV  IFGRR H++ IN    ++RN  ERAAINAPIQG
Sbjct: 781 YFLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQG 840

Query: 895 SAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           SA++I R AMI ++K  E  K   +K+LLQIHDEL+FEVP +E+   ++II   M     
Sbjct: 841 SASEIMRLAMIRLNKKFESIKNNKSKILLQIHDELIFEVPVKEVKNITEIIKDEMTSVTE 900

Query: 954 PKIN-LRVPLKVNIKVSNNW 972
             ++    PL V++   +NW
Sbjct: 901 SDLHTFSTPLTVDVNTGDNW 920


>gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 924

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/981 (40%), Positives = 605/981 (61%), Gaps = 73/981 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR-KESIA- 58
           ++K +H +L+DGS +I+RA+YA P L+RK DGLPV A++GFC+ML+KLL++S+  E++  
Sbjct: 4   IKKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCSMLFKLLEDSKSNENLQK 63

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD    TFRNEIY DYKANR + P+ L PQ   +R +  AF +P++++  +EA
Sbjct: 64  PTHFAVIFDAARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVVAFNLPSVDLPNYEA 123

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY      +G  VTI+S+DKDLMQL      ++D +K + I  E ++ K+G+ PE
Sbjct: 124 DDLIATYVEQILAKGAKVTIVSSDKDLMQLYRKDVRIFDPMKNKFITPEDIVTKFGVGPE 183

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ +Q+L GDS DN+PG+PGIG KTAA L+ +YG LE +L NA  IKQ KRRE ++E  
Sbjct: 184 KVIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLDNAQEIKQNKRRETLIENK 243

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A +S+KLV L  D P+   LE   L+  +  +L  FL+ +EF +L++ V + Y     
Sbjct: 244 DKAIISKKLVTLMKDAPVERKLEEFHLKKIDKNKLYKFLREMEFNRLLSSVISAYG---- 299

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             EP++                                ++T+K   E  P+K        
Sbjct: 300 --EPLL--------------------------------EETAK---ETKPEK-------- 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I N K+I +W+ + E  G  +    T ++DA  +  + I++ST    
Sbjct: 315 -KHQNISKKNYHLITNEKEIDEWINEAEEAGELAIDTETSSLDAHQTDLVGISLSTK--- 370

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                      I  + +       K  L KE ++  LK   E++   KIG NIK+D +VL
Sbjct: 371 -----------IGQACYIPIGHKFKGCLKKETVIKKLKPLLEDKSVKKIGQNIKFDFIVL 419

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           ++ GI+M   ED MLMSYVLD+G++ H++ ++++  L +   + KEI+ + K  I    +
Sbjct: 420 YKQGINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQHKTISFKEIVGTGKKEINFSDV 479

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +  E+A E++++  +L+ +    L +EKL ++YE  +KP+I +++ MEI GI+ID  
Sbjct: 480 ELDKAMEYAAEDADITYRLYKIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNK 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            LK +S +  K +  LE+ ++ +S ++FN++SPKQLG+I++  LK     KT+ G + T 
Sbjct: 540 FLKVLSEKFEKKISKLEKEVFKISKKEFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATN 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  LE +    +   K IL+WRQ+SK+K+TY+D+LP HIN  T+RVHT + LA+T TGRL
Sbjct: 600 ASVLEDLAFKGHEFPKLILDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRL 659

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIPIK++ G+ IR+AFI+     LISADY+QIE+RILA +A++  L + F N
Sbjct: 660 ASSDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSN 719

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIH + A+++F V+I+KV   MRR AK INF IIYGIS + LA Q+ +   EA +++ 
Sbjct: 720 NEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLN 779

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF +FP I  Y++ T  F R++GYV  IFGRR H++ IN    ++RN  ERAAINAPIQ
Sbjct: 780 AYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQ 839

Query: 894 GSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           GSA++I R AMI ++K  E  K   +K+LLQIHDEL+FEVP +E+   ++II   M    
Sbjct: 840 GSASEIMRLAMIRLNKKFESIKNNKSKILLQIHDELIFEVPVKEVKNITEIIKDEMTSVT 899

Query: 953 LPKIN-LRVPLKVNIKVSNNW 972
              ++    PL V++   +NW
Sbjct: 900 ESDLHTFSTPLTVDVNTGDNW 920


>gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 921

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/972 (41%), Positives = 579/972 (59%), Gaps = 68/972 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-SHFAVI 64
           HL L+DGS +I+RA++  P L+ K  GLP  A+ GF  MLWKL++N RK+  A +HFAVI
Sbjct: 9   HLILIDGSGYIFRAYHRLPPLTNKA-GLPAGAVYGFTTMLWKLVENIRKQDDAPTHFAVI 67

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    +FR ++YP YKA+RP  PE L+PQ PL+R AT+AF +P+IE +G EADDIIA Y
Sbjct: 68  FDSSRKSFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDIIACY 127

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           + +A + GF VT+ S+DKDLMQL+ P   L+D V    I  E V+KK+G+ PEK+  L A
Sbjct: 128 SRVALERGFQVTVYSSDKDLMQLIQPRLNLFDPVNNCLIGSEQVVKKFGVVPEKLGDLLA 187

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPG+PG+G KTA+ L+ EYGNL  IL +A  IKQ K R+N++EY ETA LSR
Sbjct: 188 LMGDTADNIPGVPGVGPKTASRLINEYGNLSEILESAPEIKQPKLRQNLIEYKETAILSR 247

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV L  D P+  PL++L+++  +   L  FL    F+ L+ R                 
Sbjct: 248 ELVALVDDKPLPEPLDNLVVKGVDMTPLRDFLSEQGFSSLLARAGG-------------- 293

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                    Q + ++D + ++ +               S    +
Sbjct: 294 ------------------------GQSAPVADGSKEMAAS--------------SSQSFD 315

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            D+Y  +++ K + +W+  +   G  +    TD +DA  ++ + +++ST       + K 
Sbjct: 316 PDAYETVIDEKALDRWIADIYQKGQVAVDTETDNLDATQAQLVGVSLST------EAGKA 369

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             I      H   D          ++  LK   E+   LKIG NIKYD +VL RYGIS++
Sbjct: 370 CYIPCGHGGHDLLDQKPDQMDLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRYGISVQ 429

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
            F+D ML+SY LD+GR  H +  ++  +  +   + K +  + KS+I  + +       +
Sbjct: 430 PFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAATRY 489

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++++  +LW LL+P+L  +    +YE +D+P+  V+++ME  GI +D   L  +S+ 
Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            + ++  LEE IY L+G +F +SSPKQLG++LF  +    G K+K+GQ+ T   +LE++ 
Sbjct: 550 FAHDISRLEEEIYALAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLA 609

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   ILEWRQLSK+KSTY+D+L   IN  T RVHT +SL    TGRL+S +PNLQ
Sbjct: 610 AEGEVIASKILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVGAQTGRLSSTDPNLQ 669

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T++G++IR AFI+     L+SADYSQIELR+ AH+A    L Q F+   DIH + 
Sbjct: 670 NIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHALT 729

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A ++FG     V  + R  AKTINF+I+YGIS + LA +L I R  A + I RYF RFP 
Sbjct: 730 AKQLFG----HVDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYFERFPA 785

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  YI++T +FVR +GYVET FGR+ H   I S K + R   ER AINAPIQG +ADI +
Sbjct: 786 IRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMSADIIK 845

Query: 902 RAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           RAM+ +  +L    L++ KMLLQ+HDEL+FEVPEE+I  A  +I   M +A LP + L V
Sbjct: 846 RAMVRMEPALAKVGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSV 905

Query: 961 PLKVNIKVSNNW 972
            L+V I    +W
Sbjct: 906 DLEVEIGTGTSW 917


>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 921

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/972 (41%), Positives = 578/972 (59%), Gaps = 68/972 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-SHFAVI 64
           HL L+DGS +I+RA++  P L+ K  GLP  A+ GF  MLWKL++N RK+  A +HFAVI
Sbjct: 9   HLILIDGSGYIFRAYHRLPPLTNKA-GLPAGAVYGFTTMLWKLVENIRKQDDAPTHFAVI 67

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    +FR ++YP YKA+RP  PE L+PQ PL+R AT+AF +P+IE +G EADDIIA Y
Sbjct: 68  FDSSRKSFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDIIACY 127

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           + +A + GF VT+ S+DKDLMQL+ P   L+D V    I  E V+KK+G+ PEK+  L A
Sbjct: 128 SRVALERGFQVTVYSSDKDLMQLIQPRLNLFDPVNNCLIGSEQVVKKFGVVPEKLGDLLA 187

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPG+PG+G KTA+ L+ EYGNL  IL +A  IKQ K R+N++EY ETA LSR
Sbjct: 188 LMGDTADNIPGVPGVGPKTASRLINEYGNLSEILESAPEIKQPKLRQNLIEYKETAILSR 247

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV L  D P+  PL++L+++  +   L  FL    F+ L+ R                 
Sbjct: 248 ELVALVDDKPLPEPLDNLVVKGVDMTPLRDFLSEQGFSSLLARAGG-------------- 293

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                    Q + ++D + ++ +               S    +
Sbjct: 294 ------------------------GQSAPVADGSKEMAAS--------------SSQSFD 315

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            D+Y  +++ K + +W+  +   G  +    TD +DA  ++ + +++ST       + K 
Sbjct: 316 PDAYETVIDEKALDRWIADIYQKGQVAVDTETDNLDATQAQLVGVSLST------EAGKA 369

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             I      H   D          ++  LK   E+   LKIG NIKYD +VL RYGIS++
Sbjct: 370 CYIPCGHGGHDLLDQKPDQMDLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRYGISVQ 429

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
            F+D ML+SY LD+GR  H +  ++  +  +   + K +  + KS+I  + +       +
Sbjct: 430 PFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAATRY 489

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++++  +LW LL+P+L  +    +YE +D+P+  V+++ME  GI +D   L  +S+ 
Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            + ++  LEE IY L+G +F +SSPKQLG++LF  +    G K+K+GQ+ T   +LE++ 
Sbjct: 550 FAHDISRLEEEIYVLAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLA 609

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   ILEWRQLSK+KSTY+D+L   +N  T RVHT +SL    TGRL+S +PNLQ
Sbjct: 610 AEGEAIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRLSSTDPNLQ 669

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T++G++IR AFI+     L+SADYSQIELR+ AH+A    L Q F    DIH + 
Sbjct: 670 NIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFREKEDIHALT 729

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A ++FG     V  + R  AKTINF+I+YGIS + LA +L I R  A + I RYF RFP 
Sbjct: 730 AKQLFG----HVDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYFERFPA 785

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  YI++T +FVR +GYVET FGR+ H   I S K + R   ER AINAPIQG +ADI +
Sbjct: 786 IRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMSADIIK 845

Query: 902 RAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           RAM+ +  +L    L++ KMLLQ+HDEL+FEVPEE+I  A  +I   M +A LP + L V
Sbjct: 846 RAMVRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSV 905

Query: 961 PLKVNIKVSNNW 972
            L+V I    +W
Sbjct: 906 DLEVEIGTGTSW 917


>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
 gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
          Length = 928

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/981 (40%), Positives = 581/981 (59%), Gaps = 69/981 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +   H+ L+DGS FI+RAF+  P ++R  DG PVNA+ GF  ML KLL +S  +    H 
Sbjct: 3   EAPRHVTLIDGSGFIFRAFHGLPPMTRA-DGTPVNAVYGFTTMLMKLLADSSSD----HV 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVIFD    TFR+ IYP+YKA+RP  PE L+PQ PLVR AT+AF +PAIE++GFEADD+I
Sbjct: 58  AVIFDSSRKTFRSAIYPEYKAHRPPAPEELVPQFPLVREATRAFDLPAIELEGFEADDLI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           ATY  +A + G  VTI+S+DKDLMQLV P   + D +K   I    V +K+G+ P+K+V 
Sbjct: 118 ATYARLAVEAGARVTIVSSDKDLMQLVGPGVEMIDPMKNRTIGEAEVREKFGVSPDKVVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GDS DN+PG+PGIG KTAA L++EYG+L+ +L  AS IKQ KRRE+++  A+ AR
Sbjct: 178 VQALCGDSSDNVPGVPGIGVKTAAQLIEEYGDLDTLLARASEIKQPKRRESLIANADLAR 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +SR+LV LRTD P+ +PL  L ++     +L +F  A  F  L+ R+             
Sbjct: 238 ISRELVRLRTDAPVPVPLSELDVKPPAPEKLAAFCAAQGFRSLMGRL------------- 284

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                +  I T+  ++    T  +   + P        +  S  
Sbjct: 285 ---------------------NAKIPTAAPTA----TRAVLPTEAPA-------EAPSLP 312

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P    +Y  + +   ++ W+      G   F   T  +D   ++ + ++++    +   +
Sbjct: 313 PKVETAYELVTDLAALENWIALATGGGLVGFDTETTGLDPLRARLVGVSLAVAPGR---A 369

Query: 422 FKVETIFI------DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +  +        DL    S D+  +     E L+ LK    +   LK+GHNIKYD  V
Sbjct: 370 CYIPVLHAPAQAQGDLLGGPSTDAP-QIIPAAETLARLKPLLADPSVLKVGHNIKYDMQV 428

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
           +   G+++  F+D ML+SY LD     H +  +    L +      E+  S ++ +  D+
Sbjct: 429 MAMQGLAVEPFDDTMLLSYALDGASHGHGLDELCLLHLGHANIPFSEVCGSGRNQVTFDR 488

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   + +++A E++++ L+L  LL+P+L+ E+++ VYE L++P++ V++ ME  GI++D+
Sbjct: 489 VPLDKARDYAAEDADMTLRLHALLKPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             L  +S +  + L  LE  +  L+ GE FNL SP+QLG +LF  L  P G KTKTGQW 
Sbjct: 549 AQLMALSEDFGRRLTELETEVIALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWA 608

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE++    + +   +L+WRQLSK+K TY D+L   IN  T RVHT YSLA+T TG
Sbjct: 609 TGADVLEEL-APLHALPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYSLAATTTG 667

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+T+ G+KIR AF++ P KKL+SADYSQIELR++AH+A+I  L   F
Sbjct: 668 RLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKKLVSADYSQIELRLVAHVAEIAGLRDAF 727

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH + A+++FGV ++ + P +RR AK INF IIYGIS F LA QL IP+ EA  Y
Sbjct: 728 AHGADIHAITASQVFGVPLDGIDPALRRRAKAINFGIIYGISAFGLAAQLGIPQGEAKAY 787

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF R+P I  Y+E+TK   R  G+V T+FGR++    I     ++R   ERAAIN P
Sbjct: 788 IEAYFARYPEIRAYMERTKEEARDQGFVTTLFGRKVFTPGIKDKNGAMRAFAERAAINGP 847

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG AADI +RAMI +  +L    L+ ++LLQ+HDELV E PE E      ++   ME A
Sbjct: 848 IQGGAADIIKRAMIRLPAALAAAGLSARLLLQVHDELVLEAPEAEADATVAVVKQVMEAA 907

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
                +L VPL V   +++ W
Sbjct: 908 A----SLSVPLLVEAGIADTW 924


>gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 924

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/982 (40%), Positives = 605/982 (61%), Gaps = 75/982 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57
           +QK +H +L+DGS +I+RA+YA P L+RK DGLP  A++GFC+ML+KLL++S+ +     
Sbjct: 4   IQKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPTGAVSGFCSMLFKLLEDSKSDQNLQK 63

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD    TFRNEIY DYKANR + P+ L PQ   +R +  AF +P++++  +EA
Sbjct: 64  PTHFAVIFDSARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVLAFNLPSVDLPNYEA 123

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY     K+G  VTI+S+DKDLMQL      ++D +K + I  E +I K+G+   
Sbjct: 124 DDLIATYAEKILKKGAKVTIVSSDKDLMQLYKKDVRIFDPMKNKFISEEDIINKFGVDAS 183

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ +Q+L GDS DN+PG+PGIG KTAA L+ +YG LE +L +A+ IKQ KRRE ++E  
Sbjct: 184 KVIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLKSANEIKQNKRRETLIENK 243

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A +S++LV L+ D P+   L    L+  +  +L  FL+ +EF +L++   + Y     
Sbjct: 244 DKAIISKQLVTLKQDSPVNRDLSEFKLKKIDKDKLYKFLREMEFNRLLSSAISAYG---- 299

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             EP                                      K++SE    KL +E+   
Sbjct: 300 --EP--------------------------------------KLSSETVEDKL-IEK--- 315

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             Q PI+N +Y  I + K I +W+++ E  G  +    T+++D   +  + I++S+   K
Sbjct: 316 --QKPISNKNYFLITDIKQIDEWIKEAEETGELAVDTETNSLDPHQADLVGISLSSKVGK 373

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     +I +  H S     KN + K+    LK   E+    KIG NIK+D +VL 
Sbjct: 374 --------ACYIPIG-HKSSKCINKNDVIKK----LKPLLEDPSVKKIGQNIKFDFIVLF 420

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           + GI M   ED MLMSYVLD+G++ H++ ++++  L +   + KEI+ + K  I    + 
Sbjct: 421 KQGIEMTSMEDTMLMSYVLDAGKNRHNMDTLSEIHLGHKTISFKEIVGTGKKEINFSDVE 480

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             + +++A E++++  +L+      L +EK++++YE  +KP+I +++ ME+ G+++D   
Sbjct: 481 IERAKDYAAEDADITFRLYKKFSKNLKLEKMINIYEIFEKPLIKILAFMEMEGVEVDNKF 540

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK +S++  K + +LE+ I+ +S + FN++SPKQLG+I++  LK     KTK G + T+A
Sbjct: 541 LKTLSSKFEKKIKNLEKEIFKISKKDFNIASPKQLGEIIYNDLKIAELKKTKKGSFATSA 600

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +    +   K +L+WRQ+SK+K+TY+DSLP HIN  T+RVHT + LA+T TGRLA
Sbjct: 601 SVLEDLAFKGHKFPKLVLDWRQVSKLKNTYSDSLPEHINPNTKRVHTSFLLAATTTGRLA 660

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPIK++ G+ IR+AF S     LISADY+QIE+RILA +A +  L + F+N 
Sbjct: 661 SSDPNLQNIPIKSEDGRDIRKAFTSRKNHLLISADYNQIEMRILADLADVKELKKAFKND 720

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A++IF V+I+KV    RR AK INF IIYGIS + LA Q+ +   EA +++  
Sbjct: 721 EDIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYGISQYGLAKQINVSNYEAEEFLDA 780

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF +FP I  Y+  T  F R++GYV  IFGRR H++ IN    ++RN  ERAAINAPIQG
Sbjct: 781 YFAKFPEIKIYMNDTIKFCRKSGYVNNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQG 840

Query: 895 SAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           SA++I R AMI ++K L D K + +KMLLQIHDEL+FEVP+    T  ++I   M  A +
Sbjct: 841 SASEIMRLAMIRLNKKLSDKKNIQSKMLLQIHDELIFEVPKNNEKTMIKLIKDEM--ASV 898

Query: 954 PKIN---LRVPLKVNIKVSNNW 972
            K +     +PL V+I V +NW
Sbjct: 899 VKSDHHSFSIPLTVDINVGDNW 920


>gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45]
 gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45]
          Length = 935

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/986 (40%), Positives = 594/986 (60%), Gaps = 72/986 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML K +++S      +H A
Sbjct: 6   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQKYVEDSSGPDAPTHVA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT AF I   E++G+EADDIIA
Sbjct: 66  VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRTATLAFNIACKELEGYEADDIIA 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T T  A + G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ PE++V +
Sbjct: 126 TLTCQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVFPERVVDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ ++G+LE +L  A  IKQ KRR+ ++E  E   L
Sbjct: 186 QALAGDSVDNVPGAPGIGIKTAALLINDFGSLEELLDRADEIKQPKRRQTLIEKREQIEL 245

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L                DC  P        L+F+          D +  + +P 
Sbjct: 246 SKRLVQL----------------DCETP--------LDFS--------LDDLEVRDPDPG 273

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           VL         +   TE++  T   T + +    + + +  E  P     E         
Sbjct: 274 VL---------LGFLTEMEFRTL--TKRVADKFGKDAPVLPEAAPAAAGAEAGAAPEMPA 322

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+   Y  +   +++  W+ + +  G  +    T  ++      + I++        T  
Sbjct: 323 IDPAGYAWVKTAEELAPWIAETQQRGWVAVDTETTGLNEMACDLVGISLCI------TPG 376

Query: 423 KVETIFIDLSVHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K   I +      + D  G + L       ++ L  LK   E+   +KIG N+KYD  + 
Sbjct: 377 KACYIPLAHRAAATDDLFGSDELAEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIF 436

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            RYGI +   +D MLMSY +  G   H + ++++++LS+T    K +L S KS I  D++
Sbjct: 437 ARYGIGITPIDDTMLMSYAMHGGLHGHGMDTLSERYLSHTPIPIKSLLGSGKSQITFDRV 496

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                 ++A E++++ L+LW + +P+L  +++  VYE L++P++ V+++ME+ G+Q+D+D
Sbjct: 497 PVEDAVKYAAEDADITLRLWTIFKPQLHQDRVTRVYEGLERPLVPVLAEMEMAGVQVDRD 556

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++S   S+ +  LE  I++L+GE FN+ SPKQLG+ILF K+    G K KTG + T 
Sbjct: 557 TLSRMSNAFSQKMAQLEAEIHELAGESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATG 616

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  LE +   ++ +   +L+WRQLSK+KSTY D+L  HINK T RVHT Y +A   TGRL
Sbjct: 617 ADVLEDLAT-EHELPARVLDWRQLSKLKSTYTDALQEHINKETGRVHTSYVIAGANTGRL 675

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++++ G++IR AF++P  K ++S DYSQIELRILAH+A I  L + F  
Sbjct: 676 ASTDPNLQNIPVRSEEGRRIREAFVAPEGKTIVSLDYSQIELRILAHMAGIDALKEAFRE 735

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH M A+E+F V +E+++P++RR AK INF +IYGIS F LA  LRIPR EA  +I 
Sbjct: 736 GQDIHAMTASEMFNVPMEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEAQAFID 795

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS--PKSSIRNINERAAINAP 891
           RYF RFPGI  Y+++T  F +++  VET+FGR IH  EI++  P++      +RAAINAP
Sbjct: 796 RYFERFPGIKTYMDETVAFAKEHKRVETLFGRIIHTPEISASGPRA---GFAKRAAINAP 852

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQIIVHSM 948
           IQG+AADI RRAM+ +  ++ +  +  KMLLQ+HDEL+FEV    E+++  A++ +   M
Sbjct: 853 IQGTAADIIRRAMVRMPGAIAE--IPAKMLLQVHDELIFEVEQGAEDDLIAAARSV---M 907

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A  P + L VPL V+     +W E
Sbjct: 908 EGAAEPVVKLDVPLVVDAGRGKSWAE 933


>gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
 gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
          Length = 987

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/981 (39%), Positives = 592/981 (60%), Gaps = 44/981 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVDGS FI+RA++A P L+R  DG PVNA+ GF NML KLL   + E++A    VIFD
Sbjct: 36  LYLVDGSGFIFRAYHALPPLNRP-DGTPVNAVLGFTNMLMKLLAELKAEAVA----VIFD 90

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              + FRNE YPDYKANRP+ PE L PQ  ++R A  AF +P +E++G+EADD+IATY  
Sbjct: 91  AKRLNFRNEFYPDYKANRPEPPEDLRPQFAIIREAVDAFCLPCLELEGYEADDLIATYAR 150

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +A ++G  VT++S+DKDLMQLV     L D +K   I  E V +K+G+PPEK+V +QAL 
Sbjct: 151 LAREQGRPVTVVSSDKDLMQLVRDGVRLMDPMKGRLIGPEEVAEKFGVPPEKVVDVQALA 210

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  I+Q  RR+ +LE AE AR+S++L
Sbjct: 211 GDSVDNVPGVPGIGVKTAAQLITEYGDLETLLERAGEIRQAGRRQKLLENAELARISKRL 270

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L   VP+ +PL+ L + + +  +LI +LK   F  +I++V      D       ++D 
Sbjct: 271 VRLDDAVPVPVPLDRLRVREPDHHKLIDWLKVQGFRSVIHKVEAELAADG-----TLVDG 325

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQKLSQYPINN 365
                         D  T + +  ++  +    +   +   PQ    ER++         
Sbjct: 326 AAPAPAPAGRAPRTDVRTALDSRSYAPAATPVPEARDDGVAPQP---ERVE--------- 373

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQ 416
             Y  + +   + +W+++    G+ +    TD +    +  + I++S          +  
Sbjct: 374 --YELVQDLDALDRWIERAREAGTVAVDTETDGLTPVSAGLVGISLSVEPGRACYIPVQH 431

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            D  + K  T  +DL                + L+ LK   E+   LK+G N+K+D  + 
Sbjct: 432 IDPATPKGATGGLDLG---GTPPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIF 488

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            R+GI+M   +D ML+SYVL +G   H +  +A + L +T     E+  + KS I  D++
Sbjct: 489 ARHGIAMAPIDDTMLISYVLGTGLHGHGMDELALRHLGHTTIKYDEVTGTGKSRITFDRV 548

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              + +++A E++++ L+L  +L+  L+ + ++ +YE +++P++ VV++ME  G+ +D+ 
Sbjct: 549 PLDKARDYAAEDADITLRLHRVLKHDLVRQHMVTLYETVERPLVPVVARMESRGVLVDRA 608

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L+Q+S++ ++ +L +E  I  L+   FN+ SPKQLG+ILF ++K P G+K K+G W T 
Sbjct: 609 VLRQMSSDFAQRMLEMEAEIQKLAPRAFNVGSPKQLGEILFDEMKLPGGSKGKSGAWGTD 668

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +  LE +      I + +L+WRQL+K+KSTY D+L   I+ RT RVHT ++LA+T TGRL
Sbjct: 669 SGVLEGLAEQGVEIAQKVLDWRQLAKLKSTYTDALAEQIDARTGRVHTSFALAATATGRL 728

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T+ G+KIRRAF++ P   L+S DYSQIELR++A +A +  L + F +
Sbjct: 729 SSTDPNLQNIPIRTEEGRKIRRAFVARPGHLLLSVDYSQIELRLVAEMAGVPALRRAFHD 788

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH M A+++FGV +++++ ++RR AK INF IIYGIS F L  QL I   EA  +I+
Sbjct: 789 GIDIHAMTASQVFGVPLDQMTSEIRRKAKAINFGIIYGISGFGLGRQLGITPGEAGAFIR 848

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF RFP +  Y+E TK F R++GYV T+ GRR     I     + R   ER AINAPIQ
Sbjct: 849 QYFERFPELQTYMETTKAFAREHGYVTTLLGRRCWIQGIREKAPARRAYAERQAINAPIQ 908

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAM  +  +L   KL   MLLQ+HDEL+FEVPE ++   + ++   ME A  
Sbjct: 909 GTAADIIKRAMARIEPALAAAKLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVMEGAA- 967

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L VPL      + NW E
Sbjct: 968 ---GLGVPLVAEAGWAPNWAE 985


>gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4]
 gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4]
          Length = 793

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/806 (45%), Positives = 524/806 (65%), Gaps = 28/806 (3%)

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +Q+L GDS+DN+PG+PGIG KTAALL+ E+G+LE +L  A  IKQKKRREN++E+AE AR
Sbjct: 1   MQSLAGDSVDNVPGVPGIGLKTAALLINEFGDLETLLEKAETIKQKKRRENLIEFAEQAR 60

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S++LV L+ DVP+ +P+  L + D +GP+ + FLKA+ FT L  RVA T D +AANIEP
Sbjct: 61  VSKQLVTLKQDVPVELPVTDLQVSDIDGPKAVGFLKAMGFTTLTKRVAETTDAEAANIEP 120

Query: 302 VVLDI---NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
              ++   +  ++KG   E          T   +   D         TPQ L   R +K 
Sbjct: 121 DDFEVPGWDVPDHKGRMAEKAAPSTPAQSTEGAADTGDM-------MTPQALADARAEKA 173

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   I+  +Y ++++   +++WV +   +G  +F   T +++A  ++ + I++ST   K 
Sbjct: 174 ATSAIDTSAYEQVLSADRLKEWVAEAYEVGYVAFDTETTSLNAMQAELVGISLSTSTGK- 232

Query: 419 DTSFKVETIFIDLS-VHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKY 471
                    +I L+ +    D  G   L       K+ L+ LK   E+   LKI  N+KY
Sbjct: 233 -------ACYIPLAHIDGEGDLLGGGALIEGQIPLKDALAILKPMLEDPAVLKIAQNLKY 285

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           D LV+  YG+++  ++D ML+SY +D+G+  + +  ++++WL +     KE+  S KS I
Sbjct: 286 DWLVMTHYGVNVTSYDDTMLLSYTVDAGKGGNGMDELSERWLGHKPIPFKEVCGSGKSMI 345

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             DK+   +   +A E+++V L+LW +L+P+L  +++  VYE L++PM+ V+++ME  GI
Sbjct: 346 TFDKVPLDKATAYAAEDADVTLRLWQVLKPRLASDRMATVYETLERPMVPVLARMEQRGI 405

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S + ++ +  LE  I++L+GE FN+ SPKQLGDILF K+  P G KTKTG
Sbjct: 406 AVDRQMLSRLSGDFAQGMAGLEAEIHELAGESFNIGSPKQLGDILFGKMGLPGGKKTKTG 465

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            W T+A  LE +    + +   I+EWRQLSK+KSTY+D+LP +I+  T+RVHT Y+LA+T
Sbjct: 466 AWSTSASVLEDLAAEGHTLPSKIVEWRQLSKLKSTYSDALPGYIHPDTKRVHTSYALAAT 525

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIP++T  G+KIR+AF++    KLISADYSQIELR+LAH+A I  L 
Sbjct: 526 TTGRLSSSEPNLQNIPVRTAAGRKIRQAFVAEKGMKLISADYSQIELRVLAHMADIPQLK 585

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + FE  LDIH M A+E+FG  IE + P +RR AK INF IIYGIS F LA QL I R EA
Sbjct: 586 KAFEEGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAFGLAAQLGISRGEA 645

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           +DYIK YF RFPGI EY+E TK  V   GYV TIFGR+ HY ++N+   ++RN  ERAAI
Sbjct: 646 SDYIKTYFERFPGIKEYMEATKKQVHATGYVTTIFGRKAHYPDVNTKNPNMRNFYERAAI 705

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI RRAM+ +   L   KL  +MLLQ+HDEL+FEVPE ++     +I   M
Sbjct: 706 NAPIQGSAADILRRAMVRMEDRLLSSKLDAQMLLQVHDELIFEVPEVQVDATIPLIKDVM 765

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E AC P + L VPL+V+ + ++NW E
Sbjct: 766 ENACDPVLKLSVPLQVDARAADNWDE 791


>gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1]
 gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1]
          Length = 941

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/974 (40%), Positives = 571/974 (58%), Gaps = 61/974 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL+LVDGS +I+RA++  P L+ +H G+P  A+ GF  MLWKL+    +    +H AVI 
Sbjct: 18  HLYLVDGSGYIFRAYHRLPPLTNRH-GIPAGAVYGFTTMLWKLINELHQADGPTHLAVIL 76

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  + TFRNE+Y  YKA+RP  PE L+PQ PL+R A +AF +P IE  G EADDIIA Y 
Sbjct: 77  DASSKTFRNEMYDQYKAHRPPPPEDLVPQFPLIRDAVRAFSVPCIEELGLEADDIIACYA 136

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A  + + VTI+S+DKDLMQL+ P   L DT+   ++  EHV++K+G+ PE +  + AL
Sbjct: 137 EAALAQDWQVTIVSSDKDLMQLIRPGLDLLDTMNNRRLGREHVLEKFGVEPEALGDVLAL 196

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG+PGIG KTA+ L+Q++G L+ +L +  +I + K +++++++A+ ARLSR+
Sbjct: 197 MGDSVDNVPGVPGIGPKTASQLIQQFGTLDAVLASTDQITKPKLKQSLIDHADNARLSRE 256

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L+ D P+  PL+ L L+      L +FL+   F  L+ +V                 
Sbjct: 257 LVRLKCDAPLPEPLDGLELKGLPPEPLRAFLEDQGFKSLLAKV----------------- 299

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                        + D   T+ T   + L+       +E+ P  +       ++Q P N+
Sbjct: 300 -------------QGDGPATLPTGGPTMLA---LAPGAEEKPAPV-------IAQVPFNH 336

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  +V+   + +W+      G  +    TD +D   +  + +++ST   K        
Sbjct: 337 KDYETVVDEAALDRWIADGFACGRIAVDTETDNVDPVRANLVGVSLSTAPGK-------- 388

Query: 426 TIFIDLSVHTSQD---STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
             +I L+ H        T +       L+ LK   E  H LKIG NIKYD +VL +YG+ 
Sbjct: 389 ACYIPLA-HIGDGLLSETPRQIAMDAALAKLKPLLEAAHILKIGQNIKYDMVVLAKYGVD 447

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +  ++D ML+SY LD+G   H +  +AQ+ L +     K +  + KS I  DK++     
Sbjct: 448 VAPYDDTMLLSYDLDAGLGGHGMDELAQRHLDHGCIEFKTVCGTGKSQISFDKVTLDVAT 507

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E+A E+++V L+LW LL+ +L  E    VYE +D+P++ V++ ME  GI++D++ L ++S
Sbjct: 508 EYAAEDADVTLRLWQLLKGRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREELARLS 567

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           AE S     LE  I+  +G  F + SPKQLGDILF K+    G K KTG + T   +LE+
Sbjct: 568 AEFSGEATRLEAAIHAEAGTPFTVGSPKQLGDILFDKMGLKGGRKGKTGVYSTDVTELER 627

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +      I + +L+WRQL+K++STY D+L   IN  T RVHT +S+A   TGRL+S +PN
Sbjct: 628 LAGDGVAIARLVLDWRQLTKLRSTYTDALQQQINPATGRVHTCFSMAVAQTGRLSSTDPN 687

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI++D G++IR AF++ P K ++SADYSQIELR+ AH+A +  L   F    DIH 
Sbjct: 688 LQNIPIRSDHGRRIRDAFVAEPGKLILSADYSQIELRLAAHMADVPALKDAFARGDDIHA 747

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A E+FG    +V+   R  AKTINFSI+YGIS + LA +L + R EA   I RYF RF
Sbjct: 748 LTAQEVFG----EVNRDTRARAKTINFSILYGISAWGLAGRLEVSREEAQGMIDRYFSRF 803

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+ YI  T   VR  GYV T+FGR+ H   I S K   R   ER AINAPIQG++ADI
Sbjct: 804 PGINHYIAATLGQVRDQGYVSTLFGRKTHLPWIRSAKQGERQSAERQAINAPIQGTSADI 863

Query: 900 TRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            +RAM+ ++ +L    L   KMLLQ+HDELVFE+  E++  AS +I   M  A  P + L
Sbjct: 864 IKRAMVRMNPALAAAGLGDVKMLLQVHDELVFELAPEQVEPASAVIRAVMAGAAEPIVRL 923

Query: 959 RVPLKVNIKVSNNW 972
            VPL V I    +W
Sbjct: 924 SVPLGVEIGTGPSW 937


>gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238]
 gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238]
          Length = 928

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/986 (40%), Positives = 593/986 (60%), Gaps = 78/986 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + ++ +    + +H A
Sbjct: 5   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNVGGDV-THVA 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRNE+Y  YKANR  +PE L PQ+PL R AT+AF I   EI+GFEADDIIA
Sbjct: 64  VIFDKGSHTFRNEMYDQYKANREAMPEDLRPQMPLTRDATRAFNIACEEIEGFEADDIIA 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVC 181
           T    A   G   TIIS+DKD+MQLV     + D +K  KI D+E V +K+G+ P +++ 
Sbjct: 124 TLAVQARDAGGRCTIISSDKDMMQLVGGGVVMMDAMKGNKIIDVEGVEEKFGVGPNRVID 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GD+ DN+PG PGIG KTAALL+ EYG+LE +L  A+ IKQ KRRE ++ +     
Sbjct: 184 VQALAGDTADNVPGAPGIGIKTAALLINEYGDLETLLDRAAEIKQPKRRETLINHRAQIE 243

Query: 242 LSRKLVML--RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           LS++LV L  + D+P T  L+ L + D +   L+ FL  +EF  +  R++     +A   
Sbjct: 244 LSKRLVTLDDKMDLPFT--LDDLEVRDPDPDVLLEFLSQMEFRTMTKRISDKLGVEA--- 298

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV+ D+    +                                   P           +
Sbjct: 299 -PVIEDVAVASD----------------------------------AP-----------A 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q   + + Y  + +   +Q W+ ++   G  +    T +++   ++ + +++  +     
Sbjct: 313 QVAFDAEKYEWVKDAAALQVWIDRIYARGYVAVDTETTSLNEMRAELVGVSLCVM----- 367

Query: 420 TSFKVETIFIDLS--VHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKY 471
                +  +I L+     + D  G + L +      + L+ LK   E++  LKIG N+KY
Sbjct: 368 ---AGQACYIPLTHKGGAADDLFGDDALAEGQMDFEDCLAILKPMLEDDSILKIGQNMKY 424

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           D  +  R GI++   +D MLMSY +++G + H +  +++++L +T    K +L + KS+I
Sbjct: 425 DAKIFKRVGITVDPIDDTMLMSYAMNAGLNRHSMDVLSEQYLGHTPIPIKPLLGAGKSAI 484

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D++   +  ++A E++++ L+LW +L+P+L  +++  VYE +++P++ V+++ME+ GI
Sbjct: 485 TFDRVPVEEAVKYAAEDADITLRLWQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGI 544

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D+D L ++S   ++ +  LE+ +Y+L+G KFN+ SP Q+G+ILF ++    G K KTG
Sbjct: 545 KVDRDTLSRMSNAFAQKMAGLEDELYELAGGKFNVGSPAQVGEILFDQMGLEGGKKGKTG 604

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           ++ T A  LE +   ++     +L+WRQLSK+KSTY D+L  HIN  T RVHT YS+   
Sbjct: 605 KYATGADILEDLAT-EHGFPGLVLDWRQLSKLKSTYTDALQTHINSETGRVHTSYSITGA 663

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+TD G+KIR AFI+   K L++ DYSQIELRILAH+A I  L 
Sbjct: 664 NTGRLSSTDPNLQNIPIRTDEGRKIREAFIADEGKVLVALDYSQIELRILAHVANIDALK 723

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F +  DIH M A+E+F V +++++  +RR AK INF +IYGIS F LA  LRIPR+EA
Sbjct: 724 QAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPRAEA 783

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I RYF RFPGI  Y++ T  F +++  VET+FGR+IH  EIN+ K       +RAAI
Sbjct: 784 QGFIDRYFERFPGIRTYMDDTVAFAKEHNRVETLFGRKIHTPEINA-KGPGAGFAKRAAI 842

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AAD+ RRAMI +  ++    L  KMLLQ+HDELVFEV ++            M
Sbjct: 843 NAPIQGTAADVIRRAMIRMDAAIA--HLPAKMLLQVHDELVFEVDKDAAHDLIAAAREVM 900

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A  P +   VPL V+  +   W E
Sbjct: 901 ENAANPVVKFDVPLVVDAGIGATWAE 926


>gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
 gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
          Length = 933

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/973 (39%), Positives = 571/973 (58%), Gaps = 51/973 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+R  DG PV A++GFCNML K +  +     A+H A
Sbjct: 5   KGCHLHLIDGSAFIFRAYHALPPLTRPSDGAPVGAVSGFCNMLQKYIDTNSGADAATHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRNE++  YKANR ++PE L PQ+PL R AT+AF I   E++ +EADD+IA
Sbjct: 65  VIFDKGSQTFRNEMFDQYKANRSEMPEDLRPQIPLTRRATEAFNIACKEMENYEADDMIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
                A   G  VTI+S+DKDLMQLV     + D +K  +ID + V +K+G+ P+++V +
Sbjct: 125 ALACQARAAGGRVTIVSSDKDLMQLVGDGVEMLDPMKNRRIDRDGVFEKFGVFPDRVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DNIPG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++EY     L
Sbjct: 185 QALAGDSVDNIPGAPGIGIKTAALLINEYGSLEELLERAEEIKQPKRRQTLIEYRAQIEL 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D P+   L+ L + + +  RL+ FL  +EF  +  R++     +A  +   
Sbjct: 245 SKRLVQLDCDTPLDFTLDDLEMREPDPERLLGFLAEMEFRTIARRISDKLGVEAPAM--- 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                     G A   E                                    + +   P
Sbjct: 302 -----PERAAGPAAPVE------------------------------------EAVEAPP 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
             + +Y +I +   ++QW+ ++   G  + + I D+        + +A++    +     
Sbjct: 321 FEHAAYERIADAAALEQWIARVYDRGYVALRPIADSASETTCALVGLALAVEPGQAGYLP 380

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                  +  +  S D           L+ L+   E++  +K+  + K    +L R+GI+
Sbjct: 381 LRHVGDSEQGLFGSSDLAEGQMDFDAALALLRPMLEDDSIMKVAQDAKAAMKLLGRHGIA 440

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D  L+SY L+SG   H + +++ + L +     K ++ + KS+   D++    V 
Sbjct: 441 LAPVDDTHLLSYALNSGLHGHTLDTLSDRLLGHRPIELKSVVGTGKSARTFDRVPVEAVT 500

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E ++++L+LW  L+ +L  +++  VYE L++P+I V++ ME  GI++D+D L ++S
Sbjct: 501 PYAAEEADIVLRLWQALKQQLFRKQVTRVYETLERPLIPVLAGMERAGIRVDRDTLSRMS 560

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              S+ +  LE  +Y+L+G +FNL SPKQLG+ILF +L  P G K KTG + T A  LE 
Sbjct: 561 NAFSQKMAGLEAEVYELAGREFNLGSPKQLGEILFDELGLPGGKKGKTGAYGTGADVLED 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ +   IL+WRQ+SK+KSTY DSL  +I   T RVHT YS A   TGRLAS EPN
Sbjct: 621 LAT-EHDLPGRILDWRQISKLKSTYTDSLQGYIQPETSRVHTSYSQAGAATGRLASTEPN 679

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T+ G++IR AF++   K L+S DYSQIELRILAH+A +  L + F +  DIH 
Sbjct: 680 LQNIPVRTEEGRRIREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHA 739

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+F V +E+++P +RR AK INF +IYGIS F LA  LRIPR EA  +I RYF RF
Sbjct: 740 ATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGLARSLRIPREEAQGFINRYFERF 799

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI +Y+++T  F +++G+V+T+FGR+IH  EIN+ K        RAAINAPIQG+AAD+
Sbjct: 800 PGIRDYMDETVAFAKEHGFVQTLFGRKIHTPEINA-KGPGAGFARRAAINAPIQGTAADV 858

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAM+ +  ++E   L   MLLQ+HDEL+FEV E  +          ME A +P +   
Sbjct: 859 IRRAMVRMPAAIE--GLPATMLLQVHDELLFEVEEGAVEALVAAAREVMEAAAMPVVQFT 916

Query: 960 VPLKVNIKVSNNW 972
           VPL V+     NW
Sbjct: 917 VPLVVDAGQGTNW 929


>gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
 gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
          Length = 932

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/991 (40%), Positives = 602/991 (60%), Gaps = 84/991 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DG+P+ A+AGFCNML + ++ +      +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGIPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT AF I   E++G+EADDIIA
Sbjct: 65  VIFDKGSHTFRNDMYDQYKANREAMPEDLRPQIPLTRTATAAFNIACKELEGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G   TIIS+DKDLMQLV     + D +K + ID + V +K+G+ PE++V +
Sbjct: 125 TLAVQARAAGGRCTIISSDKDLMQLVGDGVEMLDAMKNKTIDRDGVFEKFGVYPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L  A  IKQ KRR+ ++++AE  RL
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLERAGEIKQPKRRQTLIDHAEQIRL 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR                 L+L D N P  I F              T  D +  + +P 
Sbjct: 245 SRS----------------LVLLDENTP--IDF--------------TIDDLEVRDPDPE 272

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ-----K 357
            L         +   +E+         +F +LS + +++   + P              +
Sbjct: 273 QL---------LGFLSEM---------EFRTLSKRVAEVLGREAPAIPEAPAPAVADAPQ 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++  P ++  Y ++ + + ++ W+ ++  +G  +    T  +D   ++ + +++S     
Sbjct: 315 IADVPFDHSKYEQVSDAEALRVWLDRIYEVGYVAVDTETTGLDELTAELVGVSLSVEPG- 373

Query: 418 DDTSFKVETIFIDLS--VHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNI 469
                  +  +I L+     S D  G + L       +E L  L    E+   LKIG N+
Sbjct: 374 -------QACYIPLTHKASRSDDLFGSDDLAPGQMPFEEALQLLTPMLEDPAILKIGQNM 426

Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
           KYD  +  + GI++   +D MLMSY + +G   H + ++++++L +T    K +L S KS
Sbjct: 427 KYDGKIFAQLGITVAPIDDTMLMSYAMHAGLHGHGMDTLSERYLGHTPLPIKPLLGSGKS 486

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++  DK+       +A E+++V L+LW L +P+L   ++  VYE L++P++ V++QME  
Sbjct: 487 AVTFDKVPMEDAVPYAAEDADVTLRLWKLFKPQLHRAEVTKVYETLERPLVPVLAQMERA 546

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI +D+D L ++S   ++ +  LE +I++L+GE FN+ SP QLG+ILF K+    G K K
Sbjct: 547 GILVDRDTLSRMSNAFAQKMAGLEADIHELAGETFNVGSPAQLGEILFGKMGLDGGKKGK 606

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG++ T A  LE +   ++ + + +L+WRQLSK+KSTY D+L +H+N  T RVHT YS+A
Sbjct: 607 TGKYSTGADVLEDLAT-EHDLARRVLDWRQLSKLKSTYTDALQDHVNANTGRVHTCYSIA 665

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRLAS +PNLQNIPI+++ G++IR AF++P  K L++ DYSQIELRILAHIA+I  
Sbjct: 666 GAATGRLASTDPNLQNIPIRSEEGRRIREAFVAPEGKVLVALDYSQIELRILAHIAQIDA 725

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + FE   DIH M A+E+F V +++++P++RR+AK INF +IYGIS F LA  LRIPR+
Sbjct: 726 LKEAFERGDDIHAMTASEMFDVPMDQMTPEIRRNAKAINFGVIYGISGFGLARNLRIPRA 785

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  +I RYF RFPGI  Y++ TK F +++G+V+T+FGR+I+   I + K        RA
Sbjct: 786 EAQGFIDRYFERFPGIRTYMDDTKAFAKEHGFVQTLFGRKINTPNIGA-KGPQAGFAARA 844

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQI 943
           AINAPIQG+AAD+ RRAMI + +++ D  L  KMLLQ+HDEL+FEV    E+ +  A++ 
Sbjct: 845 AINAPIQGTAADVIRRAMIRMPEAIAD--LPAKMLLQVHDELLFEVEKGAEDALIAAARE 902

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A  P + L V L V+  V  NW E
Sbjct: 903 V---MENANDPVVKLDVKLTVDAGVGANWAE 930


>gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2]
 gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2]
          Length = 938

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/992 (40%), Positives = 596/992 (60%), Gaps = 82/992 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A++GF NML + ++ +     A+H A
Sbjct: 7   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFVNMLQRYVEGNNGADAATHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E++GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDQYKANRDAMPEDLRPQIPLTRTATKAFNIACEEMEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T ++ A   G  VTI+S+DKDLMQLV     + D +K ++ID + V++K+G+ P ++V +
Sbjct: 127 TLSHQARDAGGRVTIVSSDKDLMQLVGDGVEMLDPMKNKRIDSDGVVEKFGVGPNRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRRE ++E  E   L
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLESLLDRAEEIKQPKRRETLIENREQIEL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+K                L+  DC     ++    L+            D +  + +P 
Sbjct: 247 SKK----------------LVQLDCE----MTLAFGLD------------DLEVKDPDPE 274

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           VL         +   TE++  T  K      ++D+                 +       
Sbjct: 275 VL---------MGFLTEMEFRTVTK-----RIADKLGLEAPVVEAAAPAATEVATPEAVA 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + D+Y  + +   +Q W+ ++   G  +    T  ++   ++ + I++           
Sbjct: 321 FDPDAYECVRDAAALQVWIDRIRARGYVAVDTETTGLNEMIAELVGISLCVE-------- 372

Query: 423 KVETIFIDLSVHT--SQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474
             +  +I L+  +  S D  G + + +      E L+ LK   ++   +KIG N+KYD  
Sbjct: 373 AGQACYIPLTHKSAASDDLFGSDEMAEGQMDFDECLAMLKPVLQDPAVIKIGQNMKYDAK 432

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           +  R  I +   +D MLMSY +++G+ +H + ++++++L +T    K +L S KS+I  D
Sbjct: 433 IFARLDIDVAPIDDTMLMSYAMNAGKHNHGMDTLSERYLGHTPIPIKPLLGSGKSAITFD 492

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           ++      ++A E++++ L+LW   +P+L + ++  VYE +++P++ V++QME  GI++D
Sbjct: 493 RVPVDDAVKYAAEDADITLRLWQQFKPQLHMNRVTTVYETMERPLVPVLAQMERHGIKVD 552

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK--LKFPSGAK---TK 646
           +D L ++S   ++ +  LE+ I +++G  FN+ SPKQLG+ILF +  L+ P G K    K
Sbjct: 553 RDTLSRMSNAFAQKMAGLEDEIQEMAGRPFNVGSPKQLGEILFDEMGLEMPDGKKPSTGK 612

Query: 647 TGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           TG + T A  LE +    D P  + IL+WRQLSK+KSTY D+L  HIN  T RVHT YS+
Sbjct: 613 TGAYSTGADVLEDLATLHDMP--RRILDWRQLSKLKSTYTDALQEHINAETGRVHTSYSI 670

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A   TGRLAS +PNLQNIP++++ G++IR AF++   K ++S DYSQIELRILAHIA I 
Sbjct: 671 AGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEDGKVIVSLDYSQIELRILAHIAGID 730

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L Q F + +DIH M A+E+F V +++++P +RR AK INF +IYGIS F LA  LRIPR
Sbjct: 731 ALKQAFLDGIDIHAMTASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPR 790

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I RYF RFPGI +Y++ T  F ++N YV+T+FGR+I+  EIN+ K       +R
Sbjct: 791 GEAQGFIDRYFERFPGIRKYMDDTVAFAKENSYVQTLFGRKINTPEINA-KGPHAGFAKR 849

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE---EEITTASQ 942
           AAINAPIQG+AAD+ RRAMI +  ++    L  KMLLQ+HDEL+FEV E   +++ TA++
Sbjct: 850 AAINAPIQGTAADVIRRAMIRMPDAIA--GLPAKMLLQVHDELIFEVEEGAVDDLITAAR 907

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   ME A  P + L V L V+     NW E
Sbjct: 908 DV---MENASDPAVKLDVKLAVDAGQGANWAE 936


>gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083]
 gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083]
          Length = 945

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/978 (40%), Positives = 577/978 (58%), Gaps = 60/978 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +    + +H A
Sbjct: 20  KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLQRYVEGNAGSDV-THVA 78

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI+GFEADDIIA
Sbjct: 79  VIFDKGSHTFRNDMYDQYKANRDAMPEDLRPQMPLTRAATKAFNIACEEIEGFEADDIIA 138

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G   TIIS+DKD+MQLV     +YD +K+ +ID + V +K+G+ PE +V +
Sbjct: 139 TLARQAREAGGRCTIISSDKDMMQLVGDGVEMYDAMKQRRIDRDGVFEKFGVFPEGVVDV 198

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG LE +L  A  IKQ KRR+ ++++     L
Sbjct: 199 QALAGDSVDNVPGAPGIGIKTAALLINEYGTLEELLDRAEEIKQPKRRQTLIDHRAQIEL 258

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  ++ +   L+ L + D     L+ FL  +EF  L  R++   D     I   
Sbjct: 259 SKRLVTLDGNMTLDFTLDDLEVRDPIADELLEFLAQMEFRTLTKRISEALDAPMPEIA-- 316

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                               +  IKT    +             P+             P
Sbjct: 317 --------------------EAPIKTGSLDA-------------PEAA-----------P 332

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + + Y  + +   +  W+      G  +    T  ++   +  + I++ +   K   + 
Sbjct: 333 FDAEKYECVRDMGALHTWIDAAYARGYVAVDTETTGLNDMIADLVGISMCSEAGK---AC 389

Query: 423 KVETIFIDLSVHT--SQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +     D S       D      L  EI ++ LK   E+   +KIG N+KYD  +  RY
Sbjct: 390 YIPLTHKDASTDDLFGSDELADGQLDLEIAIAALKPLLEDPSVMKIGQNMKYDAKIFARY 449

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           GI +   +D ML+SY   +G  +H + ++++++L +T    K +L + KS+I  D++   
Sbjct: 450 GIEIAPIDDTMLISYAQHAGLHNHGMDALSERYLGHTPIPIKPLLGTGKSAITFDRVPID 509

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +A E++++ L+LW  L+P L   +   VYE +++P++ V++QME  GI++D+D+L 
Sbjct: 510 HATPYAAEDADITLRLWQHLKPTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVLS 569

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S   ++ +  LE  I++++G  FN+ SP Q+G+ILF ++    G K K G++ T A  
Sbjct: 570 RMSNAFAQKMAGLEAEIHEMAGHSFNVGSPAQVGEILFDEMGLEGGKKGKNGKYSTGADI 629

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   ++ + + IL+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGRLAS 
Sbjct: 630 LEDLAT-EHEMPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLAST 688

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+++ G++IR AFI+   K L++ DYSQIELRILAH+A I  L Q F +  D
Sbjct: 689 DPNLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVAGIDSLKQAFRDGHD 748

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH M A+E+F V +++++  +RR AK INF +IYGIS F LA  LRIPRSEA  +I RYF
Sbjct: 749 IHAMTASEMFDVPLDEMTADVRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGFIDRYF 808

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFPGI EY+  T  F + N  VET+FGR IH   IN+ K       +RAAINAPIQG+A
Sbjct: 809 DRFPGIKEYMNDTTAFAKANDRVETLFGRVIHTPNINA-KGPQAGFAKRAAINAPIQGTA 867

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI RRAMI +  +++D     KMLLQ+HDEL+FEV ++ +    +     ME A  P +
Sbjct: 868 ADIIRRAMIRMPDAIKDQP--AKMLLQVHDELLFEVEKDGVDQLIKTAKDIMENAADPVV 925

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL V+     NW E
Sbjct: 926 KLDVPLIVDAGQGANWAE 943


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/987 (38%), Positives = 568/987 (57%), Gaps = 70/987 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + + HL LVDGS +I+RAF+A P ++R  DG+PVNA+ GF  ML   L     + + +H 
Sbjct: 32  ETQPHLILVDGSGYIFRAFHALPPMTRP-DGVPVNAVFGFTTMLGNFL----TKHVGTHI 86

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD   VTFR+EIYPDYKA+RP+ P  L+PQ  L+R AT AFG+  +E  GFEADD+I
Sbjct: 87  AVVFDSSRVTFRSEIYPDYKAHRPEPPPELVPQFALIREATAAFGVACVEQPGFEADDLI 146

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A Y     + G  VTI+S+DKDLMQLV P   L D +K++ I    V++K+G+ P+K+V 
Sbjct: 147 AAYAKGFVERGGQVTIVSSDKDLMQLVRPGVQLLDPIKQKPIREPEVLEKFGVTPDKVVD 206

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GDS DN+PG+PGIG KTAA L+ EYG+LE +L  A +I+Q KRRE ++ +AE AR
Sbjct: 207 VQALAGDSTDNVPGVPGIGVKTAATLILEYGDLEGLLAAAPQIRQPKRREALINFAEQAR 266

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +SR+LV+L  + P+  P++ L+       RL  FL+   F  L++R+    D D A+  P
Sbjct: 267 ISRRLVLLDENAPLPAPVDQLLARAPEPGRLAGFLREQGFRSLLHRMG--LDGDTADSAP 324

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V      T           +       + F                              
Sbjct: 325 VSRPRFATNGAVPEPAATAEPPPAADAAPFGP---------------------------- 356

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  +     +Q ++      G  +    TD++DA ++  + ++++    +    
Sbjct: 357 ------YETVTELAALQPFLDAARAGGLLAIDTETDSLDALNANLVGLSLAVAPGR---- 406

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLT----------KEILSYLKKFFENEHFLKIGHNIKY 471
                 ++ L  H     +G                E++  L+    +   LKI HN KY
Sbjct: 407 ----ACYVPLR-HGPPPGSGDLLAEAPAAPAQLSQAEVVEALRPLLADPAVLKILHNAKY 461

Query: 472 DKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525
           D  VL R     + +   +D ML+SY +D+GR  H +  ++ + L +      E+  + +
Sbjct: 462 DLEVLARPEHGALDITPVDDTMLISYSMDAGRHGHGMDELSLRHLGHRPIPFDEVTGTGR 521

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           + IP  +++  +   +A E+++V L+LW  LRP+L  ++ L +YE++++ M+ V+  ME+
Sbjct: 522 ARIPFSQVALDKATAYAAEDADVTLRLWQALRPRLRPDRSLALYEQVERRMVAVLRDMEM 581

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI++D   L ++  + S+ ++ LE+ I++L+G+ FN+ SPKQLG+ILF + K P G + 
Sbjct: 582 AGIKVDGAELARIGEDFSQRMVVLEQEIHELAGKPFNVGSPKQLGEILFDEQKLPGGKRG 641

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           K G W T A  LE +    + + + +L WRQL+K+KSTY + L   I++R  RVHT +S+
Sbjct: 642 KNGAWGTDASVLEDLAARGHELPRRVLHWRQLAKLKSTYVEGLAAQIDRRDGRVHTDFSM 701

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A T TGRL+S EPNLQNIPI+T+ G +IRRAF++ P   L++ADYSQIELR+LAH+A + 
Sbjct: 702 AVTSTGRLSSTEPNLQNIPIRTEEGVRIRRAFVAEPGHVLLAADYSQIELRLLAHLADVP 761

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F    DIH   AA+IFG+  +KV  + RR AKTINF IIYG+S F LA +L I  
Sbjct: 762 SLRDAFAKGEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYGMSAFGLAARLGIGP 821

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA   I  YF ++PGI E +E+ K+  R+ GYV + FGR++  D I + + + R   ER
Sbjct: 822 GEARGIIDAYFSQYPGILEEMERLKSEAREKGYVLSPFGRKLWIDGIQAKEQARRGNAER 881

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP QG AA+I +RAM+ +  +L    L+ +MLLQ+HDEL+FEVPE E+   ++ + 
Sbjct: 882 AAINAPFQGGAAEIIKRAMVRMPAALRAAGLSARMLLQVHDELLFEVPEAEVDATAECVR 941

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             ME        LRVPLK  I    NW
Sbjct: 942 QVMESVA----TLRVPLKAEIGHGANW 964


>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
 gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
          Length = 924

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/981 (39%), Positives = 560/981 (57%), Gaps = 68/981 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K+ HL LVDGS FI+RAF+A P ++   DG PVNA+ GF NML +LL    +E   +H A
Sbjct: 5   KQVHLILVDGSGFIFRAFHALPPMTSP-DGTPVNAVYGFSNMLSRLL----REHAGTHLA 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD    TFRN++Y +YKA+RP+ PE L PQ  LVR AT AFG+PA+E  G+EADD+IA
Sbjct: 60  VIFDAGRHTFRNDLYSEYKAHRPEPPEELRPQFSLVRDATAAFGVPALEEAGWEADDLIA 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            Y       G   TI S+DKDLMQL+ P   + D +K   I  + V  K+G+ P+++  +
Sbjct: 120 AYARKVTDAGGQCTIYSSDKDLMQLIRPGVMMMDPIKNRPIGEKEVEAKFGVSPDRVAQV 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GD +DN+PG+PGIG KTA+ L+ EYG+L+ IL  A  +K  +RR+N+L +A+ ARL
Sbjct: 180 QALIGDPVDNVPGVPGIGPKTASALMAEYGSLDGILAGAEGMKASRRRDNLLAHADMARL 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S +LV LR D P   PL  L+  D +  RL ++L  + F+ L+ R+        A   P 
Sbjct: 240 SLELVTLREDAPCPEPLSALVCCDVDMERLGAWLAEMGFSSLLQRMGLK-----AKPRP- 293

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                                +I++   P  +  E    L   P
Sbjct: 294 -------------------------------------RISAHAHPAAV-AEPEGALPPIP 315

Query: 363 INN-DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +   Y  + + + ++QWV++  T G  +    TD +D   + P+ + IS   Q     
Sbjct: 316 TEDYGPYETVTDPEVLRQWVEQARTSGVCAVDTETDGLDPL-TAPL-VGISLAPQCGRAC 373

Query: 422 FKVETIFIDL--SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           +      +DL  S+ T Q   G        L  L+  F +   LK+  N K+D LVL + 
Sbjct: 374 YIPLGHQVDLMDSLGTPQMPVGT------ALEILEPLFADPSVLKVFQNAKFDLLVLTQA 427

Query: 480 G-ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
           G +     +D ML+SY   +G+    +  +++  L ++     E+  + ++ +   ++  
Sbjct: 428 GSVQPAPIDDTMLISYAQSAGQHGQGMDELSRLTLDHSPIPYDEVTGTGRNRVVFSQVDI 487

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++   +A E+++V L+LW +LRP+L   + L +YE +++P+I +++ ME  GI +D D L
Sbjct: 488 ARATPYAAEDADVTLRLWQVLRPRLRTSRALALYEEMERPLIPILADMERAGIAVDADDL 547

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +S E ++ +  +E  I+ L+G +FN+ SPKQLG+ILF ++  P G +TK G W T + 
Sbjct: 548 RAMSIEFAQRMGVIEAEIHKLAGREFNVGSPKQLGEILFDEMGLPGGKRTKAGAWGTDSS 607

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+ +    + +   IL WRQL+K+KSTYAD+L N IN  T RVHT + +A T TGRL+S
Sbjct: 608 VLQDLADQGHDLPARILAWRQLAKLKSTYADALLNQINPATGRVHTSFQMAVTTTGRLSS 667

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G +IRRAF++ P   L+SADYSQIELR+LA +A I  L + F    
Sbjct: 668 NDPNLQNIPIRTEEGGRIRRAFVAAPGHLLVSADYSQIELRLLADVANIPALREAFALGQ 727

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+FG+ +E + P  RR AK INF IIYGIS F L  QL IP  EA  YI  Y
Sbjct: 728 DIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAFGLGRQLGIPPGEARGYIDAY 787

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PGI +Y+E+ K   R  GYV T FGRR     I    +  RN  ER AINAP+QG 
Sbjct: 788 FARYPGIRDYMERVKAEARAKGYVTTPFGRRCWVPGIADKSAVRRNYAERQAINAPLQGG 847

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAM+ +  +L D  L  +MLLQ+HDELVFEV +++    + ++   ME A    
Sbjct: 848 AADIIKRAMVRIPAALSDAGLDGRMLLQVHDELVFEVRKDDADRLAALVRQVMESAA--- 904

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L VPL V      NW + +
Sbjct: 905 -TLSVPLVVETGTGTNWADAH 924


>gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
 gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
          Length = 941

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/986 (39%), Positives = 584/986 (59%), Gaps = 78/986 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + ++ +    + +H A
Sbjct: 18  KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNVGGDV-THVA 76

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI+GFEADDIIA
Sbjct: 77  VIFDKGSHTFRNDMYDQYKANREAMPEDLRPQMPLTRDATKAFNIACEEIEGFEADDIIA 136

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVC 181
           T    A   G   TIIS+DKD+MQLV     + D +K  KI D+E V +K+G+ P +++ 
Sbjct: 137 TLAVQARDAGGRCTIISSDKDMMQLVGGGVVMMDAMKGNKIIDVEDVEEKFGVGPNRVID 196

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GD+ DN+PG PGIG KTAALL+ EYG+LE +L  A  I Q KRR+ ++++     
Sbjct: 197 VQALAGDTADNVPGAPGIGIKTAALLINEYGDLETLLDRAGEITQPKRRQTLIDHRAQIE 256

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS++LV L  D  + +P                               T  D +  + EP
Sbjct: 257 LSKRLVTL--DDKMDLPF------------------------------TLDDLEVRDPEP 284

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQKLSQ 360
            VL           +E        +   +F +++ + S K+                  Q
Sbjct: 285 DVL-----------LEF-------LSQMEFRTMTKRISDKLGVAAPAVADVAVAADAPEQ 326

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              + + Y  + +   +Q W+ ++   G  +    T +++   ++ + +++        T
Sbjct: 327 PAFDAEKYEWVKDAAALQVWIDQIYARGYVAVDTETTSLNEMRAELVGVSLCV------T 380

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474
           + +   I +      + D  G + L +      E L+ LK   E++  LKIG N+KYD  
Sbjct: 381 AGEACYIPLTHKSGAADDLFGDDALAEGQMDFEECLAILKPMLEDDSILKIGQNMKYDAK 440

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           +  R GI +   +D MLMSY +++G   H +  +++++L +T    K +L + KS+   +
Sbjct: 441 IFKRVGIDVDPIDDTMLMSYAMNAGLHRHGMDVLSEQYLGHTPIPIKPLLGAGKSAKTFN 500

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           ++       +A E++++ L+LW + +P+L  +++  VYE +++P++ V+++ME+ GI++D
Sbjct: 501 RVPVEDAVRYAAEDADITLRLWEVFKPQLHRKQVTSVYETMERPLVPVLAKMEMHGIKVD 560

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +D L ++S   ++ +  LE+ +Y+L+G KFN+ SP Q+G+ILF ++    G K K G++ 
Sbjct: 561 RDTLSRMSNAFAQKMAGLEDELYELAGGKFNVGSPAQVGEILFDQMGLEGGKKGKNGKYA 620

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE +   ++ +   +L+WRQLSK+KSTY D+L  HIN  T RVHT YS+    TG
Sbjct: 621 TGADVLEDLAT-EHDLPGRVLDWRQLSKLKSTYTDALQTHINAETGRVHTSYSITGANTG 679

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+TD G+KIR AFI+   K L++ DYSQIELRILAH+A I  L Q F
Sbjct: 680 RLSSTDPNLQNIPIRTDEGRKIREAFIADEGKVLVALDYSQIELRILAHVANIDALKQAF 739

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH M A+E+F V +++++P +RR AK INF +IYGIS F LA  LRIPR+EA  +
Sbjct: 740 RDGHDIHAMTASEMFNVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGF 799

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF RFPGI  Y++ T  F +++  VET+FGR+IH  EIN+ K       +RAAINAP
Sbjct: 800 IDRYFERFPGIRTYMDDTVAFAKEHNRVETLFGRKIHTPEINA-KGPGAGFAKRAAINAP 858

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE---EEITTASQIIVHSM 948
           IQG+AAD+ RRAMI +  ++    L  KMLLQ+HDELVFEV +   E++  A++ +   M
Sbjct: 859 IQGTAADVIRRAMIRMDDAIA--HLPAKMLLQVHDELVFEVDKDAAEDLIAAARDV---M 913

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A  P +   VPL V+  +   W E
Sbjct: 914 ENAANPVVKFDVPLVVDAGIGATWAE 939


>gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
 gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
          Length = 948

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/995 (39%), Positives = 582/995 (58%), Gaps = 74/995 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  + HL+LVDGSS+I+RA++  P L+   DG PV A+ G+  MLWKL  +  K    +H
Sbjct: 1   MADKQHLYLVDGSSYIFRAYHRLPPLT-DPDGTPVGAVYGYTTMLWKLADDLDKADGPTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+ D  + +FRNEIY  YKANRP  PE L+PQ PL+R AT+AF +P IE +  EADD+
Sbjct: 60  LAVVLDKSSQSFRNEIYDQYKANRPDPPEDLVPQFPLIRDATRAFSLPMIEEENVEADDM 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----LYDTVKEEKIDIEHVIKKWGIPP 176
           IA+Y   A+  G+ VTI+S+DKDLMQLV         + DT+K  +I ++ V  K+G+PP
Sbjct: 120 IASYAREAQARGWDVTIVSSDKDLMQLVGEKDGAKIDMLDTMKSARIYVDEVKDKFGVPP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E +  + AL GDS+DNIPGI G+G KTA+ L+ E+G+L   L  A  +K+ K +E +LE+
Sbjct: 180 ELVGDVLALMGDSVDNIPGIFGVGPKTASKLIDEHGSLTAALDAAEDMKKSKLKERLLEH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A LSR LV LR D P+ I +E + L+   G  L +FL+   FT L+ R+      DA
Sbjct: 240 RKDAELSRVLVTLREDCPLPIAIEDMKLDGIPGEPLAAFLEKHGFTSLLRRL------DA 293

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ-TSKINSEQTPQKLFLERL 355
            +  P                   DR   +  ++  +  D  TS+ N             
Sbjct: 294 GSGSP-------------------DRPNDLNPAKVETKGDSGTSEGNR------------ 322

Query: 356 QKLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           Q L ++P ++  +Y  +   + ++ W+ K       +    T  +DA  +  + I+++T 
Sbjct: 323 QPLPEFPAVDRSAYETVQTMERLEHWIAKCRAARIIAVDTETSALDAMRADLVGISLAT- 381

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK--------EILSYLKKFFENEHFLKIG 466
                     E  +I L  H +    G +  ++        + ++ LK   E++  LKIG
Sbjct: 382 -------GANEACYIPLG-HLNDGGGGSDMFSEKPEQVPLDDAVAALKPLLESDAVLKIG 433

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-----SHDIASIAQKWLSYTR---K 518
            NIKYD  VL RYGI++   +D M++S+ LD+GRS      H +  ++++ L +T    K
Sbjct: 434 QNIKYDLNVLARYGIAVAPIDDTMILSFDLDAGRSEGGVGGHGMDELSERHLGHTPLSFK 493

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           E+  + +  IP  ++   +  E+A E+++V  +L   L+P+L +E    +YER+D+P+I 
Sbjct: 494 EVCGTGRKQIPFGEVPLDKATEYAAEDADVTWRLHQHLKPRLAIEHGARIYERVDRPLIP 553

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           VV+QME  GI++D+  L ++S E +     LE+ I++L+G++F + SPKQLG++LF  L 
Sbjct: 554 VVAQMERHGIKVDRARLAKLSEEFATETAKLEKTIHELAGKEFTVGSPKQLGEVLFDDLG 613

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
              G K K+GQ+ T    LE+++     I   +LEWRQL+K+KSTY D+L   IN  T R
Sbjct: 614 HKGGKKGKSGQYSTDQSVLERLSGDGAEIADKVLEWRQLTKLKSTYTDALQQAINPDTGR 673

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT YSL    TGRL+S +PNLQNIPI+T +G++IR AF+      L++ADYSQIELR+ 
Sbjct: 674 VHTSYSLVGAQTGRLSSTDPNLQNIPIRTPIGRQIREAFVPENGNVLLAADYSQIELRLA 733

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A +  L + F    DIH   A E++G    +     R  AKTINF+I+YGIS + LA
Sbjct: 734 AHMADVPELKEAFAEGEDIHARTAREMYG----EADRDTRARAKTINFAILYGISRWGLA 789

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L+I   EA + I  YF RFPGI  YI +T   VR+ GY ET+FGR+  +  I S   +
Sbjct: 790 GRLKIEPDEAQELIDTYFKRFPGIQSYIHETLETVRERGYSETLFGRKTWFPRIGSKNQA 849

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEI 937
            R  +ERAAINAPIQG++ADI +RAM  +  +LED  L   +MLLQ+HDELVFE+PE ++
Sbjct: 850 ERQGSERAAINAPIQGTSADIIKRAMARMMPALEDAGLEHVRMLLQVHDELVFELPEGDV 909

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             AS II   M +A LP + L VPL + I    +W
Sbjct: 910 EAASPIIERVMAEAALPAVELSVPLGIEIGTGASW 944


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/986 (39%), Positives = 569/986 (57%), Gaps = 63/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++NHL+LVDGSS+I+RA++  P L+    G+PV A+ G+  MLWKL ++       +H
Sbjct: 1   MSEKNHLYLVDGSSYIFRAYHRLPPLTNPR-GVPVGAVYGYTTMLWKLAKDLHDADGPTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVI D+ + +FRNEIY  YKANRP  PE L+PQ PL+R AT+AF +P IE++GFEADD+
Sbjct: 60  LAVILDHSSESFRNEIYDQYKANRPDPPEDLVPQFPLIRDATRAFSLPCIEMEGFEADDL 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLV-----SPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           IA+YT  A +EG+ VTI+S+DKDLMQL+      P   + DT+K  ++ I+ V +K+G+ 
Sbjct: 120 IASYTEAAVREGWDVTIVSSDKDLMQLIREPAGGPHVDMLDTMKNVRLGIDAVNEKFGVT 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+ +  + AL GDS+DN+PG+ G+G KTA  L+QEYG+L   L  A  +K  K REN++E
Sbjct: 180 PDLVGDVLALMGDSVDNVPGVRGVGPKTATKLIQEYGSLTAALDGAETMKPGKLRENLIE 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           +   A LSR LV L+ D P+  PL+ L L       L  FL    F  L  +        
Sbjct: 240 HRAMAELSRILVDLKRDCPLPDPLDALKLGAIPPEPLKLFLDEHGFRSLSAK-------- 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                   LD+ T                   T   +  +  T   ++  TP        
Sbjct: 292 --------LDLGTAP-------------AGPPTLPRAGAAPVTPAADAPSTPTLP----- 325

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              S  PI+   Y  +   + + +W+         +    T ++D+   + + +++ST  
Sbjct: 326 ---SMPPIDRARYETVTTIEALDRWIADARAAHVVAVDTETASLDSVTGRLVGVSLSTGA 382

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKEILSYLKKFFENEHFLKIGHNIKYD 472
            K          +I L  H   D   +        + L  L   F ++  LK+GHN+KYD
Sbjct: 383 GK--------ACYIPLG-HGGTDMFAEKPEQIAMGDALERLGALFADDAVLKVGHNLKYD 433

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
             VL ++G+++  ++D +LMS+ LD+G+  H +  +A+  L +   + K++  + KS I 
Sbjct: 434 IGVLAQHGVTVAPYDDTLLMSFALDAGKHQHGLDELAKLHLDHVCLSFKDVCGTGKSQIS 493

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             ++   +  E+A E++ V  +LW LL+ +L +E    VYE +D+P+  VV  ME  GI 
Sbjct: 494 FAEVQLDRATEYAAEDAEVAWRLWKLLKLRLPLEGGTRVYEMVDRPLAAVVEGMERAGIM 553

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D+D L ++S E +  +L +E  I+ L+G+ F + SP+QLG+ILF K+    G K K+G 
Sbjct: 554 VDRDYLAKLSGEFANEMLRIEGEIHALAGQPFAIGSPRQLGEILFDKMGLKGGRKGKSGD 613

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           W T   +LE++     PI + ILEWRQL+K+KSTY D+L   +N  T RVHT YSL    
Sbjct: 614 WSTDQNELERLERDGVPIARKILEWRQLAKLKSTYTDALQEQVNATTGRVHTSYSLVGAQ 673

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+T++G++IR AFI+ P   LI+ADYSQIELR+ AH+A +  L +
Sbjct: 674 TGRLSSTDPNLQNIPIRTEVGRQIRDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKE 733

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   A E+FG    +V+   R  AKT+NFSI+YGIS + LA +L I   EA 
Sbjct: 734 AFARGDDIHAATAIELFG----EVNRDTRGKAKTVNFSILYGISRWGLAGRLEITPDEAQ 789

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I RYF RFPGI +YI  T    R  GY ET+FGR+  +  I +   + R  +ERAAIN
Sbjct: 790 ALISRYFERFPGISDYISDTLETARARGYTETLFGRKTWFPRIKAANQNERAGSERAAIN 849

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           APIQG++AD+ +RAM  +  +L D  LA  KMLLQ+HDELVFE PE++   A ++I   M
Sbjct: 850 APIQGTSADLIKRAMARMPGALADAGLADVKMLLQVHDELVFEAPEDKAAAAGEVIRAVM 909

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
             A  P + L VPL+V I    +W +
Sbjct: 910 MGAAEPALKLSVPLEVEIGTGKSWGD 935


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/984 (38%), Positives = 564/984 (57%), Gaps = 59/984 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +  HL LVDGS FI+RAF+A P ++   +G+PVNA+ GF  ML +LL    K+ + +H
Sbjct: 1   MTETPHLVLVDGSGFIFRAFHALPPMTSP-EGVPVNAVYGFTTMLARLL----KDHVGTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR+EIYP YKA+RP+ PE L PQ  L+R ATQAF +P IE+ G+EADD+
Sbjct: 56  LAVLFDASRQTFRSEIYPQYKAHRPEPPEDLRPQFSLIREATQAFNVPGIELPGWEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+Y      +G   TI+S+DKDLMQLV    C+ D +K+  +    V  K+G+PP K+V
Sbjct: 116 IASYATAIRAQGGTCTIVSSDKDLMQLVGDGVCMLDPIKQTPVGPTEVETKFGVPPTKVV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GD  DN+PG+PGIG KTAA L+QEYG LE +L  A  +K+ KRR+ ++E+A+ A
Sbjct: 176 DVQALMGDPTDNVPGVPGIGPKTAAALVQEYGTLEAVLNAAPEMKKSKRRDMLIEHADAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+S +LV L TDVP+ +P+E L   + +   L  +L  + F  +++R+            
Sbjct: 236 RVSLQLVTLATDVPLPVPVEELGTREPDMLVLADWLDRMGFRSILSRM------------ 283

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                       G+   +        +    +S++  T+  +    P    L        
Sbjct: 284 ------------GLGHPSGAHAHRAARKVAAASVAGATTPADDASAPDASVL-------S 324

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P ++  Y  +   + +Q+WV   +  G  +    TD +D   +  +  +I+T   K   
Sbjct: 325 APYHD--YETVRTAEALQKWVSAAQEAGICAVDTETDGLDPLAANIVGFSIATAPGK--- 379

Query: 421 SFKVETIFIDLSVH-TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  ++ L    T +  TG+       L  L    +++  LKI HN K+D L+L   
Sbjct: 380 -----ACYVPLKHEGTLEAPTGEQLAVDAALKLLAPLLQDDAVLKIFHNAKFDLLILDHA 434

Query: 480 GI---SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           GI   S+   +D ML+SY   +G     +  ++   LS+T      +  + ++ +P  ++
Sbjct: 435 GIPLSSITAVDDTMLISYSQSAGLHGQGMDELSAMHLSHTPISYDSVTGTGRNRLPFAQV 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +   ++A E+++V L+LW +L P L   K L +YE++++P+  +++ ME  GI +D+ 
Sbjct: 495 PVATATKYAAEDADVTLRLWHVLHPTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRA 554

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++S +    +  +E +IY+ +G +FN+ SPKQLG+ILF ++    G + K G W T 
Sbjct: 555 ELDRLSKDFEARMQGMENDIYEAAGRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTD 614

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +  L+ +    + +   IL WRQL+K+KSTY D+L      R  RVHT + +A T TGRL
Sbjct: 615 SSVLQDLADQGHDLPARILAWRQLAKLKSTYTDALLRQAG-RNDRVHTSFQMAITSTGRL 673

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++T+ G +IR+AFI+PP KKLISADYSQIELR+LA +A I  L + F+ 
Sbjct: 674 SSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQIELRLLADVANIPALREAFQL 733

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A+E+F + +E +    RR AK INF IIYGIS F L  QL IP  EA  YI 
Sbjct: 734 GQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYID 793

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PGI +Y+E+ +   R +GYV T FGRR +   I+   ++ R   ER AINAP+Q
Sbjct: 794 AYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQ 853

Query: 894 GSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G AADI +RAM+ +  +L+      T+MLLQ+HDEL+FE  E E    + II + ME A 
Sbjct: 854 GGAADIIKRAMVHLPLALQKAGFGETRMLLQVHDELLFETDESEAEAVAAIIKNVMEAAA 913

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L VPL V   +  NW E +
Sbjct: 914 ----DLAVPLVVETGIGQNWAEAH 933


>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
 gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
          Length = 944

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/978 (39%), Positives = 569/978 (58%), Gaps = 61/978 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL L+DGS FI+RAF+A P +S    G+PVNA+ GF NML +LL    ++ + +H AVIF
Sbjct: 17  HLVLIDGSGFIFRAFHALPPMSSPQ-GVPVNAVYGFTNMLARLL----RDHVGTHLAVIF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNEIYP YKA+RP+ PE L PQ  L+R AT AF +P+IE+ G+EADD++A Y 
Sbjct: 72  DAGRTTFRNEIYPQYKAHRPEAPEDLRPQFGLIRDATAAFNVPSIELAGWEADDLLAAYA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A + G   TIIS+DKDLMQLV P   L D +K++ I    V  K+G+ P+++V +QAL
Sbjct: 132 KAAVEAGGCCTIISSDKDLMQLVRPGVELMDPMKQKPIREAEVEAKFGVRPDQVVDVQAL 191

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DN+PG+PGIG K AA L+ EYG LE IL  A  +K  KRR+N++E+A+ AR+SR+
Sbjct: 192 MGDSTDNVPGVPGIGPKGAAQLVNEYGTLEQILAAAPAMKASKRRDNLIEHADAARMSRR 251

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV+L  + P+  P+  L   +     L  +L+ + F   I R+       AA   P +  
Sbjct: 252 LVLLDDNAPMPQPISELGCREPVRETLRDWLEEMGFHSTIQRMGLGL---AAKPRPFMRQ 308

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
           I   E+K  A                    D+ + +     P                  
Sbjct: 309 IVRPEDKAAA-------------------RDEVAAVTIPDAPYG---------------- 333

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD-TSFKV 424
             Y  + +   + +W+      G  +    TD+++A  +  + +++S    K     F  
Sbjct: 334 -PYETVTDMDALDRWIADARAAGVMAVDTETDSLNARQANMVGLSLSVAPGKACYVPFLH 392

Query: 425 ETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           ETI  DL     +DSTG+  + +    E L  LK   ++   LK+  N KYD  V    G
Sbjct: 393 ETIR-DL---LEEDSTGEAFVRQLDRTEALERLKPLLQDASVLKVFQNAKYDLTVFRGAG 448

Query: 481 I-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I  +   +D ML+SY   +G     +  +++  L +T      +  + +  IP  +++  
Sbjct: 449 IPEITPIDDTMLISYAQSAGEHGQGMDELSELHLGHTPVTYDSVTGTGRKRIPFAQVAIE 508

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +A E+++V L+LW +LRP+L   + L +YE +++P+I +++ ME  GI++D   L+
Sbjct: 509 AATAYAAEDADVTLRLWQVLRPQLRTRQALALYEEIERPLIQILTDMEDVGIKVDATELR 568

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++SA+ ++ + ++E+ I++  G  FN+ SPKQLG+ILF ++  P G +TK+G W T +  
Sbjct: 569 RMSADFAERMGTIEQEIHEQVGRSFNVGSPKQLGEILFDEMGLPGGKRTKSGSWGTDSGV 628

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    + + + IL WRQL+K+KSTYAD+L   +++ TQRVHT + +A T TGRL+S 
Sbjct: 629 LESLAEQGHELPQKILAWRQLAKLKSTYADALVQQMDQDTQRVHTSFQMAITTTGRLSSN 688

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI+T+ G +IR+AF++ P   L+SADYSQIELR+LAH+AKI PL + F    D
Sbjct: 689 EPNLQNIPIRTEEGARIRKAFVATPGCVLLSADYSQIELRLLAHVAKIEPLLEAFRLGQD 748

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+E+FG+ +E + P  RR AK INF IIYGIS F LA QL+I   EA  YI  YF
Sbjct: 749 IHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAFGLAQQLQISPGEARSYIDAYF 808

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PGI  Y+E+TK   +++GYV T FGRR +   I     + R   ER AINAP+QG A
Sbjct: 809 ARYPGIRAYMERTKEEAKKHGYVTTPFGRRCYVPGITEKNGARRAYAERQAINAPLQGGA 868

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAM+ + + L    L  KM+LQ+HDEL+FEV E++    +  +   ME A     
Sbjct: 869 ADIIKRAMVHLARRLPATGLKAKMVLQVHDELLFEVEEQDAKALADFVRTEMEGAA---- 924

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L V L+V   +  +W +
Sbjct: 925 KLDVALEVETGIGPSWAD 942


>gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
          Length = 994

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/986 (39%), Positives = 570/986 (57%), Gaps = 69/986 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           NHL+LVDGS++I+RA++  P L+    G+PV A+ G+  MLWKL ++       +H AVI
Sbjct: 56  NHLYLVDGSAYIFRAYHRLPPLTNPQ-GVPVGAVYGYTTMLWKLAEDLHAADGPTHLAVI 114

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D  +VTFRNE+Y  YKANRP  PE L+PQ PL+R AT+AF +  IE  G EADD+IA+Y
Sbjct: 115 LDKGSVTFRNELYDAYKANRPPPPEDLVPQFPLIRDATRAFSLACIEEAGLEADDLIASY 174

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS--PTTC---LYDTVKEEKIDIEHVIKKWGIPPEKM 179
           T  A  +G+ VTI+S+DKDLMQLV   P      + DT+K +++ I  V+ K+G+PPEK+
Sbjct: 175 TRAAAAQGWDVTIVSSDKDLMQLVGEYPGGGRVDMLDTMKNQRVFIPEVVDKFGVPPEKV 234

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD++DN+PGI GIG KTA  L+QE G+LE  L NA  +K  K RE+++E A+ 
Sbjct: 235 GDVLALMGDAVDNVPGIRGIGPKTATKLIQENGDLETALANAPAMKAGKLRESLIEQADM 294

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           ARLSRKL+ L+ D  + IPL+   L       L +FL    FT L+ ++ T         
Sbjct: 295 ARLSRKLIALKDDCALPIPLDDFTLGPIPPDPLAAFLGEHGFTSLLRKLGT--------- 345

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                 R+T    ++ +      +    E   +       Q L 
Sbjct: 346 ----------------------RETAAPAARTTGAPAPAAPTAPETGNR-------QPLP 376

Query: 360 QYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           ++P I+  +Y  + +  D+++W+ + +  G  +    T  +DA  +  + I+++T     
Sbjct: 377 EWPAIDTAAYPCVQDEADLEEWIARAQAAGLVAVDTETSALDAVGADLVGISLAT----- 431

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLT---KEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +I L    + D   +          L+ LK   E++  LK+G NIKYD  V
Sbjct: 432 ---GPGAACYIPLGHGNTTDMFAERPRQIDKARALALLKPLLEDDSVLKVGQNIKYDLTV 488

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRS-----SHDIASIAQKWLSYTR---KEILKSRKSS 527
           L R+GI++   +D M+MS+ LD+GR       H +  +A++ L +T    K++  + K +
Sbjct: 489 LARHGIAVAPIDDTMVMSFCLDAGRGEPMPFGHGMDELAERHLGHTTIKFKDVAGTGKKA 548

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           I   ++       +A E++ V  +L  +L P+L  E    +Y+R+D+P++ V++ ME  G
Sbjct: 549 ISFAEVPLPDATRYAAEDAEVTWRLHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEGHG 608

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D++ L  +S E +  + +LE  I++ +G  F + SPKQLG++LF KL +  G K K+
Sbjct: 609 IKVDRERLATLSGEFATRIAALESVIHEKAGTTFTIGSPKQLGEVLFDKLGYKGGKKGKS 668

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T    LE +      +   +LEWRQLSK+KSTY D+L   IN  T RVHT YSL  
Sbjct: 669 GQYSTDQSVLETLASQGAEVATLVLEWRQLSKLKSTYTDALQAAINPATGRVHTSYSLVG 728

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIP++T++G++IR AF++ P   L+SADYSQIELR+ AHIA +  L
Sbjct: 729 AQTGRLSSNDPNLQNIPVRTEIGRQIRDAFVAEPGHVLLSADYSQIELRLAAHIADVPAL 788

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F +  DIH   A E+FG    +V+   R  AKTINF+I+YGIS + LAT+L     E
Sbjct: 789 REAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAILYGISRWGLATRLGTSADE 844

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A   I RYF RFPGI  YI +T   VR  GY ET+FGR+  +  I S   + R  +ERAA
Sbjct: 845 AQAMIDRYFERFPGIQRYIHETLEHVRDRGYSETLFGRKTWFPRIASKTQAERAGSERAA 904

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAPIQG+ ADI +RAM  +  +L +  L   +MLLQ+HDELVFE+PE ++  AS +I  
Sbjct: 905 INAPIQGTCADIIKRAMARMTPALVEAGLGHVRMLLQVHDELVFELPESDVAAASAVIER 964

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972
            M  A  P + L VPL V I    +W
Sbjct: 965 VMATAAEPAVKLSVPLGVEIGTGPSW 990


>gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 957

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/995 (37%), Positives = 554/995 (55%), Gaps = 77/995 (7%)

Query: 5   NHLFLVDGSSFIYRAFYAT----PLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           + L LVD SSF++RA++ +    P   +R  DGLP  A   F   L++ +++     + +
Sbjct: 11  SRLILVDASSFVFRAYHQSLNQDPKYNARPSDGLPTGAARLFFAKLFQFVRDGAAGVVPT 70

Query: 60  HFAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           H  ++FD  +  + R ++YP+YKANR + P  L PQ+PLVR A +AFG+P IE+   EAD
Sbjct: 71  HLGIVFDKGSRESHRRQLYPEYKANRSETPADLRPQMPLVREAVRAFGLPVIELDRTEAD 130

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHV 168
           D+IATY   AE +G  V I+S DKDL QLVSP    YD             E  +D+E V
Sbjct: 131 DLIATYARAAEAKGAEVVIVSADKDLQQLVSPRIRFYDAESGSKGKPGYRPERNLDVEAV 190

Query: 169 IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           + KW G+ P ++    AL GD+ DNIPG+PGIG KTAA LL EYG+LE +L  AS IKQ 
Sbjct: 191 VAKWEGLQPGQIGDALALIGDTSDNIPGVPGIGLKTAAQLLLEYGSLEALLEGASAIKQP 250

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           KRREN+L  AE ARLSR+LV L   V + +  + L L   +G RL+++LKALE   L  R
Sbjct: 251 KRRENLLAAAEGARLSRRLVELDCSVDLPVDPDTLALPAPDGRRLVAYLKALELPALAKR 310

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           VA     DA  + P               + E+    T        +             
Sbjct: 311 VAKELGVDADRVPP---------------DAELAASPTTAPGADGPV------------- 342

Query: 348 QKLFLERLQKLSQYPINN-DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
                     +  +P  + D+Y  +    D+  W+      G   F +     DA     
Sbjct: 343 ----------MPPFPAADPDAYGLVATQDDLDGWIAAARAAGR--FGLHLHRGDA---GA 387

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEH 461
           I + I+    +         +++ +      D         +I        +    E+  
Sbjct: 388 IGLGIAVEPGR--------AVYVPIEHRAGGDGLFGGLAPGQIDAAAAWGAVGALMEDAG 439

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-- 519
             KI H++K       R G  + G +D+ LMSY L+SG + H +  +A + L     +  
Sbjct: 440 VRKIVHDLKGTAKAAGRLGFEIAGADDVGLMSYALESGLTGHGLPELAARHLGNAAPDPD 499

Query: 520 -ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
            +    +  +  + ++       A + ++ +L+LW +L P+L       VYE L+ PM+ 
Sbjct: 500 ALRGQGRGRVDAEAVAPRAAAPVAAQIADAVLRLWTVLAPRLEGTPTQAVYEELELPMVP 559

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME  G++ID+ +L ++S +    L  LE  I++L G  F + SPKQ+GD+LF +L 
Sbjct: 560 VLARMEAAGVRIDRAVLTELSRDFGATLARLETEIHELGGGPFQIGSPKQIGDVLFGRLG 619

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P G +T +GQW T A  LE++    + +   +L+WR+ SK+KSTYAD+L +  ++ T R
Sbjct: 620 LPGGRRTPSGQWATGATILEELAAAGHALPGRLLDWRRTSKLKSTYADALLSAADRGTDR 679

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT +SLA+T TGRL+S +P L NIPI+T+ G++IR AF++    +++SADYSQ+ELR+L
Sbjct: 680 VHTTFSLAATTTGRLSSSDPGLHNIPIRTEEGRRIRAAFVAAEGHRILSADYSQVELRLL 739

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AHIA +  + + F   +DIH   A+++FGV +  V  ++RR AKTINF I+YGIS F LA
Sbjct: 740 AHIADVPRMREAFAEGVDIHAATASDMFGVPVGAVPGELRRRAKTINFGIVYGISAFGLA 799

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L I R EAA++I RYF RFPGI +Y+E TK F R++G+V T+FGR  HY  I S   S
Sbjct: 800 DRLGIGRQEAAEFIARYFERFPGIRDYVEGTKTFCREHGFVRTLFGRVCHYPGITSGNVS 859

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER A+NAPIQG+AADI RRAMI +  +L D  L+ +MLLQ+HDELVFEV E E  
Sbjct: 860 ERMGVERQAVNAPIQGTAADIIRRAMIRMEGALADSGLSARMLLQVHDELVFEVAEAECA 919

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             ++++   M  A  P I+L VPL V  + + NW+
Sbjct: 920 DTARVVSDVMAGAAAPDIDLAVPLVVEARSAENWE 954


>gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
 gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
          Length = 924

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/990 (40%), Positives = 571/990 (57%), Gaps = 80/990 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +  HL+LVDGS +I+RA+++ P ++R  DG PVNA+ GF  ML KLL +      A H
Sbjct: 1   MTEPKHLYLVDGSGYIFRAYHSLPPMTRT-DGTPVNAVYGFTAMLMKLLADMD----ADH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD   V+FRNEIYP YKA RP  PE L+PQ PL+R A +AF +P IE  GFEADD+
Sbjct: 56  LAVIFDKARVSFRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAFNVPCIERDGFEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IATY   A  EG  VT++S+DKDLMQLV     L+D +K   I    V +K+G+ P+K++
Sbjct: 116 IATYAKRARAEGAIVTVVSSDKDLMQLVGEGVALFDPMKNRAIGPAEVFEKFGVAPDKVI 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GD++DN+PG+PGIG KTAA L+ EYG+LE +L  A+ IKQ KRR+++L++AE A
Sbjct: 176 DVQALAGDAVDNVPGVPGIGVKTAAQLIGEYGDLETLLARAAEIKQPKRRQSLLDHAEAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+S +LV LR DV ++  L      + +   L  FL    F  L+ RV       A    
Sbjct: 236 RISLQLVRLRDDVEVSETLADFATAEPDAEVLAGFLAENGFRSLLARVTAVAHAKAGT-- 293

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                                        TPQ          + 
Sbjct: 294 ---------------------------------------------TPQP---------AA 299

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-TLDQKDD 419
            P ++D Y  +    ++  W+ K    G  +    TD++ A  +  + ++++ T  +   
Sbjct: 300 APADDD-YVLVNTLAELGVWIAKARAAGLVAIDTETDSLKARRATLVGVSLAITPGRACY 358

Query: 420 TSF-----KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             F     K E +  D +     +   K      +   L+    +   LK+GHN+K+D  
Sbjct: 359 IPFAHGLRKAEGLDFDGAAPPVANIEDKAAALALLGDLLR----DPGVLKVGHNLKFDLH 414

Query: 475 VLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPI 530
           VL   G+S +   +D M++SYVLD     H +  +A   L   + T +E+    K  I  
Sbjct: 415 VLANAGLSDVAPVDDTMVLSYVLDGTLHGHGMDELAGLHLGRRTITFEEVCGKGKGQITF 474

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D++   +   +A E+++V L+L+LLLR +L+ E ++ V+E LD+PM+ +++ ME  G+++
Sbjct: 475 DQVPLDKAVAYAAEDADVTLRLYLLLRDRLLKEHMVRVHETLDRPMVRILTDMEAAGVRV 534

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQ 649
           D   LK +S + +K +  LE+ I+ L+G  FN++SPKQLG++LF ++    G K+ KTG 
Sbjct: 535 DALRLKALSGDFAKRMGDLEDQIHALAGHAFNVASPKQLGEVLFEEMSLTGGKKSRKTGA 594

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           W T AQ L+Q+    + +   +L+WRQ +K+K TY D+L   I++RT RVHT Y L  T 
Sbjct: 595 WSTDAQVLDQLAAEGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRVHTTYGLTVTA 654

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++++ G+KIR AFI+ P   LISADYSQIELR++AH+A IT L Q
Sbjct: 655 TGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYSQIELRLVAHVAGITALRQ 714

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH + A+++FGV +E + P +RR AK INF IIYGIS   LA QL + R EAA
Sbjct: 715 AFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINFGIIYGISAHGLAQQLGVGRPEAA 774

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +I  YF RFP I  Y+E  K   R  G+V T FGRRI    I     + R   ER AIN
Sbjct: 775 AFITAYFARFPEIRSYMETVKEEARTVGWVATPFGRRIPIPGIQDKNPAARAFAERQAIN 834

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQG AADI +RAMI++  +LE   LAT+MLLQ+HDEL+FE PE E  TA+ ++   ME
Sbjct: 835 APIQGGAADIIKRAMIALPPALEQAGLATRMLLQVHDELIFEAPEAEAETAAALVKRVME 894

Query: 950 KACL---PKINLRVPLKVNIKVSNNWQEEN 976
            A      +    VPL+V+  ++ +W E +
Sbjct: 895 TAVTLTDDQGERTVPLEVDTGIAASWAEAH 924


>gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
 gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
          Length = 928

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/983 (38%), Positives = 567/983 (57%), Gaps = 75/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +NHL+LVDGS +I+RA++  P L+ KH G PV A+ G+  MLWKL     K    +H AV
Sbjct: 3   QNHLYLVDGSGYIFRAYHQLPPLTNKH-GQPVGAVYGYTTMLWKLADELGKAEGPTHLAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + D  + TFRNE+Y  YKANRP  PE L+PQ P++R AT+AF +P IE  GFEADDIIA+
Sbjct: 62  VLDKGSHTFRNEMYDAYKANRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIAS 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           YT  A  +G+ VTI+S+DKDLMQL+ P   +YDT+K E+   ++V+ K+G+ PE++  + 
Sbjct: 122 YTKAAIAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMNKFGVQPEQLGDVL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS+DN+PGIPGIG KTAA L+ EYG LE  L  A  +K+ K +EN++ +A+ ARLS
Sbjct: 182 ALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALEAAPSMKKSKMQENLIAHADMARLS 241

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV L   + +  PL+ L L+      L  FL+   F  L+ R                
Sbjct: 242 RRLVALHDAMDLPEPLDDLTLKGIPLEPLQQFLEHHGFKSLLARAGA------------- 288

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                    +  S  +   + ++ E+ P               I
Sbjct: 289 --------------PAAAVAIATAAAAVSEATPPAAPVHEEEPP---------------I 319

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +   Y  +V  + + +W+      G  +    TD +D      + ++++           
Sbjct: 320 DRSLYETVVTEEALDRWIAAAHAEGLVAVDTETDMLDCVSCALVGVSLA----------- 368

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKE--------ILSYLKKFFENEHFLKIGHNIKYDKLV 475
              +  + + +      GK+   ++        +L+ LK   E++  LKIG N+KYD  V
Sbjct: 369 ---VGPNAACYVPVGHGGKDMFAEKPDQLPLALVLAKLKPLLEDDSVLKIGQNLKYDITV 425

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           L R+GI +  ++D ++MS+ LD+G+S   H +   A+  L++   + K++  + KS I  
Sbjct: 426 LRRHGIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAAKTHLNHICISFKDVCGTGKSQISF 485

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            ++   +  E+A E+++V L+LW L + ++  E    VYE +D+P++ V+++ME  GI++
Sbjct: 486 AEVPLDKATEYAAEDADVTLRLWKLFKTRIANEGATRVYELVDRPLVSVIAKMEHEGIKV 545

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D++ L ++SAE +  + +LE  I+ L+G+ F + S +QLG ILF K+ +  G K K+G +
Sbjct: 546 DREALSRLSAEFTAGIAALETEIHGLAGQPFAIGSTQQLGAILFDKMGYKGGKKGKSGAY 605

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+      I   +L+WRQLSK+KSTY D+L   IN+ T RVHT YSL+   T
Sbjct: 606 STDVTILEQLKVQGAEIAGKVLDWRQLSKLKSTYTDALQAQINRDTSRVHTSYSLSGAQT 665

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T++G++IR AF++ P   +++ADYSQIELR+ AH+A +  L + 
Sbjct: 666 GRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEA 725

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N  DIH   A ++FG    +V+   R  AKTINF+I+YGIS + LA +L I   EA D
Sbjct: 726 FANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQD 781

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I RY+ RFPGI  YI  T    R  GY ET+FGR+  +  I +     R   ERAAINA
Sbjct: 782 MISRYYERFPGISLYITDTIEKARSKGYTETLFGRKTWFPRIKASVQHERQGAERAAINA 841

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           PIQG++ADI +RAM  +  +L    L   KMLLQ+HDELVFE+PE ++  AS +I   ME
Sbjct: 842 PIQGTSADIIKRAMARMGPALAAEGLHDVKMLLQVHDELVFELPEGDVEQASAVIRRVME 901

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
            A  P + L VPL V I    +W
Sbjct: 902 GAAEPIVKLSVPLGVEIGHGPSW 924


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/984 (38%), Positives = 562/984 (57%), Gaps = 58/984 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +  HL LVDGS FI+RAF+A P ++   +G+PVNA+ GF  ML +LL    K+ + +H
Sbjct: 32  MTETPHLVLVDGSGFIFRAFHALPPMTSP-EGVPVNAVYGFTTMLARLL----KDHVGTH 86

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR+EIYP YKA+RP+ PE L PQ  L+R ATQAF +P IE+ G+EADD+
Sbjct: 87  LAVLFDASRQTFRSEIYPQYKAHRPEPPEDLRPQFSLIREATQAFNVPGIELPGWEADDL 146

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+Y      +G   TI+S+DKDLMQLV    C+ D +K+  +    V  K+G+PP K+V
Sbjct: 147 IASYATAIRAQGGTCTIVSSDKDLMQLVGDGVCMLDPIKQTPVGPAEVETKFGVPPTKVV 206

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GD  DN+PG+PGIG KTAA L+QEYG LE +L  A  +K+ KRR+ ++E+AE A
Sbjct: 207 DVQALMGDPTDNVPGVPGIGPKTAAALVQEYGTLEAVLNAAPEMKKSKRRDMLIEHAEAA 266

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+S +LV L TDVP+ +P++ L   + +   L  +L  + F  +++R+   +    A+  
Sbjct: 267 RVSLQLVTLATDVPLPVPVDELNTREPDMLMLADWLDRMGFRSILSRMGLGHPS-GAHAH 325

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                +      G A     D   T   S  S+                           
Sbjct: 326 RAAKKVAAASVAG-ATTPAADTAPTTDASVLSA--------------------------- 357

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P ++  Y  +   + +Q+W+   +  G  +    TD +D   +  +  +I+T   K   
Sbjct: 358 -PYHD--YETVRTAEALQKWISTAQEAGICAVDTETDGLDPLAANIVGFSIATAPGK--- 411

Query: 421 SFKVETIFIDLSVH-TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  ++ L    T +  TG+       L  L    +++  LKI HN K+D L+L   
Sbjct: 412 -----ACYVPLKHEGTLEAPTGEQLAVDAALKLLAPLLQDDAVLKIFHNAKFDLLILDHA 466

Query: 480 GI---SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           GI   S+   +D ML+SY   +G     +  ++   L++T      +  + ++ +P  ++
Sbjct: 467 GIPLSSITAVDDTMLISYSQSAGLHGQGMDELSNLHLNHTPITYDSVTGTGRNRVPFAQV 526

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                 ++A E+++V L+LW +L P L   K L +YE++++P+  +++ ME  GI +D+ 
Sbjct: 527 PVETATKYAAEDADVTLRLWYVLHPTLRTNKALALYEQIERPLSVILADMEKAGIAVDRT 586

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++S +    +  +E +IY+ +G +FN+ SPKQLG+ILF ++    G + K G W T 
Sbjct: 587 ELDRLSKDFEARMQGMENDIYEAAGRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTD 646

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +  L+ +    + +   IL WRQL+K+KSTY D+L      R  RVHT + +A T TGRL
Sbjct: 647 SSVLQDLADQGHDLPARILAWRQLAKLKSTYTDALLRQAG-RDDRVHTSFQMAITSTGRL 705

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++T+ G +IR+AFI+P  KKLISADYSQIELR+LA +A I  L + F+ 
Sbjct: 706 SSTDPNLQNIPVRTEEGTRIRQAFIAPSGKKLISADYSQIELRLLADVANIPALREAFQL 765

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A+E+F + +E +    RR AK INF IIYGIS F L  QL IP  EA  YI 
Sbjct: 766 GQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYID 825

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PGI +Y+E+ +   R +GYV T FGRR +   I+   ++ R   ER AINAP+Q
Sbjct: 826 AYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQ 885

Query: 894 GSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G AADI +RAM+ +  +L+     AT+MLLQ+HDEL+FE  E +    ++II + ME A 
Sbjct: 886 GGAADIIKRAMVHLPLALQKAGFGATRMLLQVHDELLFETDESDAEAVAEIIKNVMEAAA 945

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L VPL V   +  NW E +
Sbjct: 946 ----DLAVPLVVETGIGQNWAEAH 965


>gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
 gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
          Length = 945

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/991 (39%), Positives = 568/991 (57%), Gaps = 69/991 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++ HL+LVDGS++I+RA++  P L+    G+PV A+ G+  MLWKL ++  K    +H
Sbjct: 1   MDEKQHLYLVDGSAYIFRAYHRLPPLTNPR-GVPVGAVYGYTTMLWKLAEDLHKADGPTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVI D    +FRN++Y  YKANRP  PE L+PQ PL+R AT+AF +  IE    EADD+
Sbjct: 60  LAVILDKAGTSFRNDLYDQYKANRPPPPEDLVPQFPLIRDATRAFSLACIEEDALEADDL 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTT----C--LYDTVKEEKIDIEHVIKKWGI 174
           IA+Y   A   G+ VTI+S+DKDLMQLV        C  + DT+K ++IDI  V++K+G+
Sbjct: 120 IASYARAATLRGWDVTIVSSDKDLMQLVGKCATGGGCIDMLDTMKNQRIDIPEVVEKFGV 179

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           PPEK+  + AL GDS+DN+PGI GIG KTA  L+QE+G+LE+ L  A  +K  K RE+++
Sbjct: 180 PPEKVGDVLALMGDSVDNVPGIRGIGPKTATKLIQEHGDLESALAAAPTMKAGKLRESLI 239

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E AE ARLSR LV L+ D P+ +P+E   L       L +FL+   FT L+ R+    D 
Sbjct: 240 EQAEMARLSRVLVALKEDCPLPVPIEDFKLGQIPRDPLAAFLEEHGFTSLLRRLD---DG 296

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
             +      L+    +NK      E +R                                
Sbjct: 297 KGSPGPKTQLNPAKPDNKAAPAAPEGNR-------------------------------- 324

Query: 355 LQKLSQYPINN-DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            Q L  +P  +  +Y  + +  ++QQW+ +       +    T  +DA  +  + ++++ 
Sbjct: 325 -QALPSWPAPDLSAYACVQSMGELQQWIARAFEARVVAIDTETSALDAMRADLVGVSLA- 382

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT---KEILSYLKKFFENEHFLKIGHNIK 470
           L   D         +I L  H   D   +  L     E L+ LK   E++  LK+G NIK
Sbjct: 383 LGPND-------ACYIPLG-HGGSDMFAEKPLQVDRAEALAALKPLLESDAVLKVGQNIK 434

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-----SHDIASIAQKWLSYTR---KEILK 522
           YD  +L R GI +   +D M+MS+ LD+GRS      H +  ++++ L +T    KE+  
Sbjct: 435 YDLNILARQGIMVSPIDDTMVMSFCLDAGRSETGLAGHGMDELSERHLLHTTMKFKELCG 494

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           + K +I   ++  +    +A E+++V  +L  L +P+L  E    +Y+++D+P+I VV+ 
Sbjct: 495 TGKKAISFAEVPLADATRYAAEDADVTWRLHRLFQPRLAGEGGTRIYQKVDRPLIPVVAM 554

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI++D++ L  +S E +  +  LE  I++  G  F + SPKQLG++LF KL +  G
Sbjct: 555 MERNGIKVDRERLSGLSTEFAAQIARLEGVIHEKCGMSFTIGSPKQLGEVLFDKLGYKGG 614

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            K KTGQ+ T    LE +      +   +LEWRQLSK+KSTY D+L   IN  T RVHT 
Sbjct: 615 KKGKTGQYSTDQSVLEGLAAQGAEVATLVLEWRQLSKLKSTYTDALQAAINPHTGRVHTS 674

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           YSL    TGRL+S EPNLQNIPI+T++G++IR AF++ P   L++ADYSQIELR+ AH+A
Sbjct: 675 YSLVGAQTGRLSSNEPNLQNIPIRTEIGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMA 734

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
            +  L + F    DIH   A E+FG     V    R  AKTINF+I+YGIS + L  +L 
Sbjct: 735 DVPALKEAFAAGEDIHARTAMEMFGT----VDRDTRGRAKTINFAILYGISRWGLGGRLG 790

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +   EA   I RYF RFPGI  YI +T   VR+ GY ET+FGR+  +  I+S   + R  
Sbjct: 791 VSADEAQAMIDRYFERFPGIQRYIHETLESVRERGYSETLFGRKTWFPRISSKNQAERQG 850

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTAS 941
           +ERAAINAPIQG++ADI +RAM  +  +L +  L   +MLLQ+HDELVFE+P+ ++  A 
Sbjct: 851 SERAAINAPIQGTSADIIKRAMARMMPALTEAGLGHVRMLLQVHDELVFELPQGDVEAAK 910

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I   M  A  P + L VPL V I    +W
Sbjct: 911 PVIERVMATAAEPAVKLSVPLGVEIGTGLSW 941


>gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17]
 gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17]
          Length = 921

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/979 (39%), Positives = 566/979 (57%), Gaps = 76/979 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL+LVDGS +I+RA++  P L+ KH G PV A+ G+  MLWKL+         +H AV+ 
Sbjct: 3   HLYLVDGSGYIFRAYHRLPPLTNKH-GEPVGAVYGYTTMLWKLVDEINAADGPTHMAVVL 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  + TFRNE+Y  YKA+RP  P  L+PQ P++R AT+AF +P IE +G EADD+IA Y 
Sbjct: 62  DKSSKTFRNEMYDQYKAHRPPPPPDLVPQFPMIRDATRAFSLPCIEEEGLEADDLIACYA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             A  EG+ VTI+S DKDLMQLV   +  + DT+   ++   +V +K+G+ P+++  + A
Sbjct: 122 RAAMAEGWQVTIVSGDKDLMQLVEDGSLDMLDTMNNRRLGEAYVQEKFGVGPKQLGDVLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DN+PG+PG+G KTA+ L+ E+G+LE++L  A  +K+ K R+N++E+A+ ARLS+
Sbjct: 182 LMGDSVDNVPGVPGVGPKTASKLIVEHGDLESVLAAAPEMKKGKLRDNLIEHADNARLSK 241

Query: 245 KLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLINRVAT-TYDCDAANIEP 301
           +LV L  + P+  PLE L L     + P L +FL+   F  LI ++   T D  A    P
Sbjct: 242 RLVTLECNAPLPQPLEELALHASIPDAP-LRAFLEHHGFRSLIAKMGQITEDAPA----P 296

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V  D                      T+  + + D                         
Sbjct: 297 VAGD----------------------TAPAAPMDDDE----------------------- 311

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P N D YT + + + + +WV      G  +    T + DA  ++ + +++     K    
Sbjct: 312 PCNLDGYTTVQDLETLDRWVADARHQGFIAIDTETSSTDATQAELVGVSLCLSPNK---- 367

Query: 422 FKVETIFIDLSVHTSQDSTGKNTL---TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 +I L  H   D   +  +     E L  +K   E+   LKIG N+K+D +VL  
Sbjct: 368 ----ACYIPLG-HGGTDLLSEVPVQIPVAEALERIKALCEDPSVLKIGQNLKFDMIVLGE 422

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
            GIS+   +D ++MS+ LD+G   H +  +A   LS+T    KE++ + K  +   ++  
Sbjct: 423 RGISIAPHDDTIVMSFDLDAGLHGHGMDELAATHLSHTCLAFKEVVGTGKKQLGFHEVDL 482

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                +A E+++V L+LW   + +L +E+   VYE +D+P++ V++ ME  GI++D++ L
Sbjct: 483 KTATRYAAEDADVTLRLWKRFKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERL 542

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            Q+S E +  +  LE  I+ L+G  F + SPKQLG+ILF +L    G K K+G + T   
Sbjct: 543 SQLSTEFAGQIAGLEGEIHTLAGTPFTIGSPKQLGEILFDRLGLKGGRKGKSGVYSTDVT 602

Query: 656 DLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +LE++   G   I++ ILEWRQLSK+KSTY D+L   IN +T RVHT YSL    TGRL+
Sbjct: 603 ELERLARDGGEEIVRKILEWRQLSKLKSTYTDALQAQINPKTGRVHTSYSLTGAQTGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPI+T++G+++R AFI+     LI+ADYSQIELR+ AH+A +  L   F N 
Sbjct: 663 STEPNLQNIPIRTEVGRQLREAFIAEDGHVLIAADYSQIELRLAAHMADVPALRDAFANG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A E+FG    +V+   R  AKTINF+I+YGIS + LA +L +   EA   I R
Sbjct: 723 DDIHSLTAKELFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLDVSADEAQAMIDR 778

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI+ YI +T + VR+ G+ ET+FGR+ H+  I S     R   ERAAINAPIQG
Sbjct: 779 YFERFPGINRYIAETLSSVREKGFTETLFGRKTHFPRIASRNQGERQGAERAAINAPIQG 838

Query: 895 SAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           ++ADI +RAM+ +  +L    L   +MLLQ+HDELVFE PE +   A  +I   M  A  
Sbjct: 839 TSADIIKRAMVRMEPALAAAGLGHVRMLLQVHDELVFEAPEADAEAAGAVIREVMAGAAE 898

Query: 954 PKINLRVPLKVNIKVSNNW 972
           P + L VPL V I V  NW
Sbjct: 899 PAVKLSVPLGVEIGVGKNW 917


>gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21]
 gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21]
          Length = 944

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/991 (39%), Positives = 580/991 (58%), Gaps = 70/991 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  + HL+LVDGS++I+RA++  P L+   +G PV A+ G+  MLWKL  +  K    +H
Sbjct: 1   MADKQHLYLVDGSAYIFRAYHRLPPLT-DPEGTPVGAVYGYTTMLWKLADDLDKADGPTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+ D  + +FRNEIY  YKANRP  PE L+PQ PL+R AT+AF +P +E    EADD+
Sbjct: 60  LAVVLDKSSHSFRNEIYGQYKANRPDPPEDLVPQFPLIRDATRAFSLPLVEEPDVEADDM 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----LYDTVKEEKIDIEHVIKKWGIPP 176
           IA+Y   A+  G+ VTI+S+DKDLMQLV         + DT+K  +I I+ V +K+G+PP
Sbjct: 120 IASYARAAQDAGWNVTIVSSDKDLMQLVGEKDGARIDMLDTMKSARIYIDEVQEKFGVPP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           EK+  + AL GDS+DNIPGI G+G KTA+ L+ E+G+L   L  A  +K+ K +E ++E+
Sbjct: 180 EKVGDVLALMGDSVDNIPGIFGVGPKTASKLIAEHGDLSAALDAAEGMKKSKLKERLIEH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LSR LV L+ D P+ I +  + L+      L +FL+   FT L+ R+      DA
Sbjct: 240 REDAELSRVLVTLKEDCPLPIAINDMKLDGVPSEPLAAFLEKHGFTSLLRRL------DA 293

Query: 297 ANIEP-VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               P    D+N  + +                +Q +  S Q +               +
Sbjct: 294 GTGSPNRATDLNPPKQQ----------------TQGAEASAQGN---------------V 322

Query: 356 QKLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           Q L   P ++   Y  + +   +++W+ +  +    +    T ++D      + ++++T 
Sbjct: 323 QPLPDLPEVDRAKYECVQSMDRLEEWIARARSARLVAVDTETTSLDCMLCDLVGVSLATG 382

Query: 415 DQKDDTSFKVETIFIDLSVHTSQD---STGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                     +  +I L  H   D      +     E L+ LK   E++  LK+  N KY
Sbjct: 383 PN--------QACYIPLG-HGGSDMFAEKPQQIGKAEALAALKPLLEDDAVLKVFQNGKY 433

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRS------SHDIASIAQKWLSY---TRKEILK 522
           D  VL R GI++   +D M++S+ LD+GRS       H +  +A++ L +   + KE+  
Sbjct: 434 DLNVLAREGIAVAPIDDTMIISFALDAGRSESGIGGGHGMDELAERHLGHPCISFKELCG 493

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           + + +IP  ++   +  E+A E+++V  +L  +L+ +L VE    +YER+D+P++ VV+ 
Sbjct: 494 TGRKAIPFAEVPLDKATEYAAEDADVTWRLHAMLKRRLPVEGGTKIYERVDRPLVPVVAG 553

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI++D+  L ++S E +     LE  I++++G++F + SPKQLG+ILF KL F  G
Sbjct: 554 MERHGIKVDRARLAKLSEEFATETKRLEGEIHEIAGQEFTVGSPKQLGEILFDKLGFKGG 613

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            K K+GQ+ T    LE+++     I   +LEWRQL+K+KSTY D+L   IN R+ RVHT 
Sbjct: 614 KKGKSGQYSTDQSVLEKLSGDGAEIAAKVLEWRQLAKLKSTYTDALQEAINPRSGRVHTS 673

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           YSL    TGRL+S +PNLQNIPI+T++G++IR AF++     L++ADYSQIELR+ AH+A
Sbjct: 674 YSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRDAFVAEEGNVLLAADYSQIELRLAAHMA 733

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
            + PL + F    DIH   A E+FG    +V+   R  AKTINF+I+YGIS + LA +L 
Sbjct: 734 DVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGISRWGLAGRLG 789

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +   EA   I  YF RFPGI +YI  T  +VR+ GY ET+FGR+  +  INS   + R  
Sbjct: 790 VEADEAQAMIDTYFKRFPGIQKYILHTLEYVREKGYSETLFGRKTWFPRINSKNQAERQG 849

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTAS 941
           +ERAAINAPIQG++ADI +RAM+ ++ +LE+  L   +MLLQ+HDELVFE+PE ++  AS
Sbjct: 850 SERAAINAPIQGTSADIIKRAMVRMNSALEEAGLGHVRMLLQVHDELVFELPEADVAAAS 909

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            II   M  A  P + L VPL V I    +W
Sbjct: 910 AIIERVMAGAAQPYVELSVPLGVEIGTGKSW 940


>gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354]
          Length = 955

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1003 (38%), Positives = 573/1003 (57%), Gaps = 79/1003 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  + HL+LVDGS++I+RA++  P L+   +G PV A+ G+  MLWKL ++  K    +H
Sbjct: 1   MADKQHLYLVDGSAYIFRAYHRLPPLTNP-EGTPVGAVYGYTTMLWKLAEDLDKAEGPTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+ D  + +FRNEIY  YKANRP  PE L+PQ PL+R AT+AF +P IE  G EADD+
Sbjct: 60  LAVVLDKSSQSFRNEIYDQYKANRPDPPEDLVPQFPLIRDATRAFSLPMIEEPGVEADDM 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-----PTTCLYDTVKEEKIDIEHVIKKWGIP 175
           IA+Y   A  +G+ VTI+S+DKDLMQLV       T  + DT+K  +I    V +K+G+ 
Sbjct: 120 IASYARAAAAQGWDVTIVSSDKDLMQLVGTSEQGGTIDMLDTMKSARIGPAEVEEKFGVA 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE +  + AL GDS+DNIPGI G+G KTA  L+Q++G+L   L  A  +K+ K +E +LE
Sbjct: 180 PELVGDVLALMGDSVDNIPGIFGVGPKTATKLIQDHGSLTAALDAAPEMKKSKLKERLLE 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           +   A LSR LV L+ D  + I ++ + L       L +FL    F  L+ R+       
Sbjct: 240 HRADAELSRILVTLKEDCELPIAIDDMKLGKIPPEPLAAFLTQHGFGSLLRRLEGG---- 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                          N G   +T++                +         PQ       
Sbjct: 296 ---------------NGGPGPKTQLH-------------PAKPQNPGEAHAPQG----NS 323

Query: 356 QKLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           Q LS+ P I+  +Y  + + + + +W++K       +    T  +DA  +  + ++++  
Sbjct: 324 QPLSEMPAIDRSTYECVQSVEQLDEWIEKAFAARLVAVDTETSALDAMQADLVGVSLAIG 383

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTL--------TKEILSYLKKFFENEHFLKIG 466
                     +  +I L  H ++   G +          T+  L+ LK   E++  +K+G
Sbjct: 384 PN--------QACYIPLG-HFNEGGGGDDMFAEKPQQIETEVALAKLKPLLESDAVVKVG 434

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS------SHDIASIAQKWLSYTR--- 517
            NIKYD  VL R+GI++   ED M++S+ LD+GRS       H +  +AQ+ L +T    
Sbjct: 435 QNIKYDLNVLARHGIAVAPIEDTMIVSFALDAGRSQDGIGGGHGMDELAQRHLGHTCLTF 494

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           KEI  + K +IP  ++   +  E+A E+++V  +L+  L+P+L VE    +YER+D+P+I
Sbjct: 495 KEICGTGKKAIPFGEVPIDRATEYAAEDADVTSRLYTHLKPRLAVEGGTRIYERVDRPLI 554

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            VV+ ME  GI++D+  L  +S   ++    LE  I++++G++F + SPKQLGDILF K+
Sbjct: 555 PVVAGMERHGIKVDRQQLAALSERFARETARLEGEIHEIAGQEFTVGSPKQLGDILFDKM 614

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            +  G K K+GQ+ T    LE+++    PI   +LEWRQL+K+KSTY D+L   IN +T 
Sbjct: 615 GYKGGKKGKSGQYSTDQSVLEKLDATGAPIATKVLEWRQLAKLKSTYTDALQQAINPKTN 674

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVHT YSL    TGRL+S +PNLQNIPI+T++G++IR+AF++     L++ADYSQIELR+
Sbjct: 675 RVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGREIRQAFVADEGNVLLAADYSQIELRL 734

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            AH+A + PL + F    DIH   A E+FG     V    R  AKTINF+I+YGIS + L
Sbjct: 735 AAHMADVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILYGISRWGL 790

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A +L I   EA D I  YF RFPGI  YI  T   VR+ GY +T+FGR+  +  INS   
Sbjct: 791 AGRLGIEADEAQDLIDIYFARFPGIQRYIVNTMETVRECGYSQTLFGRKTWFPRINSKNQ 850

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL------ATKMLLQIHDELVFE 931
           + R  +ERAA+NAPIQG++ADI +RAM  +  +L +  L        +MLLQ+HDELVFE
Sbjct: 851 AERQGSERAAVNAPIQGTSADIIKRAMARMGPALAEAGLKPDAPDGVRMLLQVHDELVFE 910

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +PE  +  A  +I   M  A  P + L VPL V I    NW +
Sbjct: 911 MPEGLVEQAKPVIRSVMADAAGPAVELSVPLGVEIGTGKNWDD 953


>gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1]
 gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1]
          Length = 946

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/989 (39%), Positives = 571/989 (57%), Gaps = 69/989 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++ HL+LVDGSS+I+RA++  P L+   +G PV A+ G+  MLWKL  +       +H A
Sbjct: 4   EQQHLYLVDGSSYIFRAYHRLPPLT-DPEGTPVGAVYGYTTMLWKLADDLDAAEGPTHLA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VI D  + +FRN+IYP+YKANRP+ PE L PQ PL+R AT+AF +P IE  G EADD+IA
Sbjct: 63  VILDKDSKSFRNDIYPEYKANRPEPPEDLRPQFPLIRDATRAFSLPCIEESGLEADDLIA 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----LYDTVKEEKIDIEHVIKKWGIPPEK 178
           +Y   A++EG+ VTI+S+DKDLMQLV         + DT+K  +I IE V +K+G+PPEK
Sbjct: 123 SYARAAQREGWNVTIVSSDKDLMQLVGEENGAKIDMLDTMKSARIYIEEVEEKFGVPPEK 182

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  + AL GDS+DNIPGI G+G KTA+ L+ E+G+L   L  A  +K+ K +E +++  E
Sbjct: 183 VGDVLALMGDSVDNIPGIYGVGPKTASKLISEHGSLTAALDQAPDMKKSKLKERLIDGRE 242

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +SR LV L+ D  + + ++ + LE      L +FL+   FT L+ R+       A  
Sbjct: 243 DAEMSRVLVTLKEDCDLPMAIDEMKLEGIPSEPLAAFLEKHGFTSLLKRLG------AGA 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P                   DR   +  ++     DQ     + Q            L
Sbjct: 297 GSP-------------------DRPNDLNPAKVDKAGDQGDAEGNRQ-----------PL 326

Query: 359 SQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            + P  + S  + V T D +Q W+ +       +    T ++DA  +  + ++++     
Sbjct: 327 PEMPKVDRSAYETVQTLDRLQAWIDRASAARLVAVDTETSSLDAMEADLVGVSLALAPN- 385

Query: 418 DDTSFKVETIFIDLSVHTSQD---STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                  +  +I L+ H   D      +    ++ L+ LK   E++  LK+  N KYD  
Sbjct: 386 -------DACYIPLA-HGGTDMFSDKPEQVAMEDALAALKLLLEDDSVLKVFQNGKYDLN 437

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--------KEILKSRKS 526
           VL R GI +   ED M+MS+ LD+GR            LS           K++  + K 
Sbjct: 438 VLARVGIDVSPIEDTMVMSFDLDAGRGEGMGGGHGMDELSERHLLHKPLAFKDVCGTGKK 497

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +IP  ++   +  E+A E+++V L+L+ +L+P+L  E    +YER+D+P+I VV+ ME  
Sbjct: 498 AIPFGEVPLDRATEYAAEDADVTLRLYRMLKPRLSEEGGTKIYERVDRPLIPVVAGMERE 557

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++D+  L ++S E +    SLE+ I++++G++F + SPKQLG+ILF K+ F  G K K
Sbjct: 558 GIKVDRARLAKLSEEFATTTASLEKEIHEIAGQQFAVGSPKQLGEILFDKMGFKGGKKGK 617

Query: 647 TGQWKTTAQDLEQI--NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           +G + T    LE +  +    PI   +LEWR LSK+KSTY D+L   IN  T RVHT YS
Sbjct: 618 SGAYSTDQSVLENLAKDEAAKPIADKVLEWRHLSKLKSTYTDALQAQINPETGRVHTSYS 677

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
           L    TGRL+S +PNLQNIPI+T++G+ IR AF+      L++ADYSQIELR+ AH+A +
Sbjct: 678 LVGAQTGRLSSTDPNLQNIPIRTEIGRTIREAFVPEDGNVLLAADYSQIELRLAAHMADV 737

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F N  DIH   A E+FG    +V+   R  AKTINF+I+YGIS + LA +L + 
Sbjct: 738 DTLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGISRWGLAGRLEVE 793

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA D I  YF RFPGI  YI +T   VR+ GY ET+FGR+  +  I S   + R  +E
Sbjct: 794 PDEAQDMIDTYFQRFPGIQRYIMETLETVRERGYSETLFGRKTWFPRITSKNQAERQGSE 853

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQI 943
           RAAINAPIQG++ADI +RAM  +  +L D  L   +MLLQ+HDELVFE+P+ ++  AS I
Sbjct: 854 RAAINAPIQGTSADIIKRAMARMLPALRDEGLGNVRMLLQVHDELVFELPDGDVEKASPI 913

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           I   M +A LP ++L VPL V+I    +W
Sbjct: 914 IERVMAEAALPAVSLDVPLAVDIGTGQSW 942


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/733 (44%), Positives = 469/733 (63%), Gaps = 24/733 (3%)

Query: 263 ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDR 322
           +LE  NGP+LI FLK +EFT L  RVA   DCDA+ IEP V+ I   E    A   ++D 
Sbjct: 1   MLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDASAIEPAVVRI---EWGDAAHGPDLDA 57

Query: 323 -DTTIKTSQFSSLSDQT--------SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373
            +          +S Q+        + +    +P  L   R +  +  P ++ +Y  I +
Sbjct: 58  AEPAPVAGGIPEVSGQSVPVPPRAKAGVEGAFSPADLAKARAEAFAALPFDHSAYVTIRD 117

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ-KDDTSFKVETIFIDLS 432
              + +W+      G  +F   T ++DA  ++ + I+++  D   D +  K+   ++ LS
Sbjct: 118 LATLDRWIADARDTGLVAFDTETTSLDAMQAELVGISMAIADNVADPSGTKIRAAYVPLS 177

Query: 433 -----VHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                         +N +  ++ L  LK   E+E  LK+  N+KYD L+L RYGI  + F
Sbjct: 178 HKNGVGDLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSF 237

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAI 543
           +D ML+SYVLD+G  +H +  +++K+L +T    K++  S ++++  D +   +   +A 
Sbjct: 238 DDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRATHYAA 297

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           E+++V L+LWL+L+P+L    L  VYERL++P++ V+++ME  GI +D+ +L ++S E++
Sbjct: 298 EDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELA 357

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +    LE+ IY L+GE+FN+ SPKQLGDILF K+    G+KTKTGQW T+A  LE +   
Sbjct: 358 QGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAA 417

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
              + + I++WRQL+K+KSTY D+LP +++  T+RVHT YSLAST TGRL+S EPNLQNI
Sbjct: 418 GFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNI 477

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++T  G+KIR AFIS P  KLISADYSQIELR+LAH+A+I  L + FE+ +DIH M A+
Sbjct: 478 PVRTAEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTAS 537

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           E+FGV +E +  ++RR AK INF IIYGIS F LA QL I RSEA DYIK+YF RFPGI 
Sbjct: 538 EMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIR 597

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +Y+E  K   R  GYVETIFGRRI+Y EI S   S+R  NERAAINAPIQGSAAD+ RRA
Sbjct: 598 DYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRA 657

Query: 904 MISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           MI +  +L +  LA   +MLLQ+HDEL+FEV +E++  A  IIV  ME A +P + +RVP
Sbjct: 658 MIKIEPALAEAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVP 717

Query: 962 LKVNIKVSNNWQE 974
           LKV+ + + NW E
Sbjct: 718 LKVDARAATNWDE 730


>gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591]
 gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591]
          Length = 928

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/986 (38%), Positives = 564/986 (57%), Gaps = 80/986 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LLQ        SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGV-GEPTGAMYGVLNMLRSLLQQYHP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFR++++  YK++RP +P+ L  Q+ PL R+  +A G+P + + G EADD+I 
Sbjct: 61  VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRM-VKAMGLPLLSVSGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V I + DKD+ QLV+P   L +T+    +  + V  K+GIPP  ++  
Sbjct: 120 TLAQQAERVGKPVLISTGDKDMAQLVTPHITLINTMNNTILGPDEVCAKYGIPPSLIIDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEY 236
            AL GDS DNIPG+PGIG KTA  LLQ  G L+ +  N  +I        K     + ++
Sbjct: 180 LALMGDSSDNIPGVPGIGEKTAQALLQGVGGLDALYGNLDKIATLTFRGAKTMAAKLEQH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A LS +L  ++TDV +    E L + + N   L       EF + +           
Sbjct: 240 KDVAYLSYQLATIKTDVELEQGCEQLTVNEPNVAELSELFTRYEFKRWL----------- 288

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                T+++    +++ +    +    K  ++ TP+ +    + 
Sbjct: 289 ---------------------TDLEDGKWLQSGKKGPAAVPFVKAEADDTPKDV----VG 323

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L Q     D Y  I++   +  WV ++ T G  SF   TD +D   +  + I+++ +  
Sbjct: 324 VLPQ-----DGYVTILDEPTLHDWVARINTAGLFSFDTETDGLDTLTANLVGISLA-IKP 377

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     +   ++D  +   +D         ++L+ LK   E+E   KIG N+K+DK V+
Sbjct: 378 GEAAYLPLGHDYLDAPMQLDRD---------KVLAVLKPLLEDESVAKIGQNLKFDKGVM 428

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            RYGI +RG   D ML SYVLDS    HD+ S++ ++L +   T +EI    K+ +  ++
Sbjct: 429 ARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLSDRYLQHKTITFEEIAGKGKNQLTFNQ 488

Query: 533 ISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           I   Q   +A E+++V L+L    W  L P+    +L  V++ +D P++ V+S+ME TG+
Sbjct: 489 IPLEQAAVYAAEDADVTLRLHETLWAKLEPQ---PELCKVFQNIDMPLVPVLSRMERTGV 545

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  +L + S E+++ L  LE   ++L+GE FNLSSPKQLG IL+ KL+ P   KT  G
Sbjct: 546 LIDTTILGEHSQELTQRLAELEVQAHELAGEAFNLSSPKQLGTILYEKLQLPVIKKTPKG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D+P+ K ILE R+L+K+KSTY D LP  IN  T+RVHT Y  A T
Sbjct: 606 APSTNEEVLAELAL-DHPLPKLILEHRELAKLKSTYTDKLPQMINPLTKRVHTSYHQAVT 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L 
Sbjct: 665 ATGRLSSSDPNLQNIPVRNEQGRRIRQAFIAPEGYHILAADYSQIELRIMAHLSRDAGLL 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F N LDIHR  AAE+FG+ +++V+ + RR AK INF +IYG+S F L+ QL IPR+EA
Sbjct: 725 RAFSNGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAFGLSRQLAIPRNEA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  +  R   ERAAI
Sbjct: 785 QKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPDIHSRNAMSRKAAERAAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI ++AMI++   L+  K    ML+Q+HDELVFEV    +  AS  I + M
Sbjct: 845 NAPMQGTAADIIKKAMIAIDGWLQQEKPLVTMLMQVHDELVFEVHHSVLDEASAKIRNLM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E  C+    L VPL+V+I   +NW +
Sbjct: 905 E-GCM---QLDVPLQVDIGTGSNWDQ 926


>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
          Length = 903

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/982 (37%), Positives = 548/982 (55%), Gaps = 89/982 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRAF+A P L+    G P  A+ G  NML KLL++   E    H
Sbjct: 1   MSKTPPLVLVDGSSYLYRAFHALPPLTNSR-GEPTGAVYGVANMLRKLLKDYAPE----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD    TFR+E+Y +YKANRP +P+ L  Q+  +    QA G+P + + G EADD+
Sbjct: 56  VVVVFDAKGKTFRDEMYAEYKANRPPMPDELAAQVEPLHQVVQAMGLPMLVVPGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT      + G  V I + DKD+ QLV P   L +T+ + K+D E V +K+G+ PE++V
Sbjct: 116 IATLAREGREHGLEVVISTGDKDMAQLVEPGVTLVNTMTDTKMDAEGVKEKFGVAPEQIV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD++DN+PG+  +G KTA   L+ YG+L+ I+ +A  IK K   EN+       
Sbjct: 176 DYLALIGDTVDNVPGVDKVGPKTAVKWLEAYGSLDGIMEHAEEIKGKVG-ENLRAALGHL 234

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+LV +R D+ + +  E L L + +   L +    LEF   +               
Sbjct: 235 PLSRELVTVRRDLELDVTPESLRLGEPDRETLRALFSRLEFRTWLK-------------- 280

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                        +  S  +Q    + + TP +           
Sbjct: 281 -----------------------------ELESGEEQAQAASDDPTPGQ----------- 300

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  I++ K +  W+++LET    +F   T ++D   ++ + +           
Sbjct: 301 ---PAQAYETILDEKALAAWMKRLETAELFAFDTETTSLDYMQAQVVGV----------- 346

Query: 421 SFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           SF V   E  ++ L+ H   D+  +     E L  LK   E+    K+GH++KYD+ VL 
Sbjct: 347 SFAVKTGEAAYLPLA-HDYADAP-QQLDRDETLKRLKPLLESARHKKLGHHLKYDRNVLL 404

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            +GI + G E D ML SYVL+S  S HD+ S+AQK+L Y     +E+       IP  ++
Sbjct: 405 NHGIELNGIEHDTMLESYVLNSTASRHDMDSLAQKYLDYRTTHYEEVAGKGAKQIPFSQV 464

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L   E    VY  ++ P++ V+S+ME TG+++D 
Sbjct: 465 RIEDATPYAAEDADITLRLHEHLWPQLSAAEGQCRVYREIEMPLVPVLSRMERTGVKVDA 524

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L   S E+++ +  +E   ++++G  FNL SPKQ+ +IL+ + K P   KT  GQ  T
Sbjct: 525 ERLFAQSHELAERMGQIEREAHEVAGGAFNLGSPKQIQEILYERQKLPVLRKTPKGQPST 584

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
               LEQ+   D P+ K ILE R LSK+KSTY D LP  I+  T RVHT Y  A   TGR
Sbjct: 585 AEDVLEQLAL-DYPLPKLILEHRSLSKLKSTYTDKLPERIDPDTGRVHTSYHQAVASTGR 643

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+T+ G++IR+AF++P  ++L++ADYSQIELRI+AH++    L + F 
Sbjct: 644 LSSSDPNLQNIPIRTEEGRRIRQAFVAPSGRRLVAADYSQIELRIMAHLSGDAGLLRAFA 703

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FGV +++VS + RR AK INF +IYG+S F LA QL I R +A DY+
Sbjct: 704 EGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIYGMSAFGLARQLGIERGDAQDYV 763

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF R+PG+ +Y+E T+   R  GYVET+FGRR++  +IN+    IR   ER AINAP+
Sbjct: 764 DRYFARYPGVKDYMESTREKARDLGYVETLFGRRLYLPDINARNGQIRAQAERVAINAPM 823

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI V + + + ++   M+LQ+HDELV EV E+ +    + +   M +A 
Sbjct: 824 QGTAADIIKRAMIQVDQWIRESRIPAVMILQVHDELVLEVDEDAVDKVREELCVRMSQAA 883

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L+VPL V   V +NW +
Sbjct: 884 ----ELKVPLVVEAGVGDNWDD 901


>gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586]
 gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586]
          Length = 929

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/986 (37%), Positives = 559/986 (56%), Gaps = 79/986 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LLQ        SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGA-GEPTGAMYGVLNMLRSLLQQYHP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFR++++  YK++RP +P+ L  Q+ PL R+  +A G+P + + G EADD+I 
Sbjct: 61  VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRM-VKAMGLPLLSVSGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V I + DKD+ QLV+P   L +T+    +  + V  K+GIPP  ++  
Sbjct: 120 TLAQQAERAGKPVLISTGDKDMAQLVTPQITLINTMNNTILGPDEVCAKYGIPPSLIIDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEY 236
            AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + ++
Sbjct: 180 LALMGDSSDNIPGVPGVGEKTAQALLQGVGGLDALYDNLDKIATLTFRGAKTMAAKLEQH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A LS +L  ++TDV + +  E L + + +   L       EF + +  V        
Sbjct: 240 KDVAYLSYQLATIKTDVELELGCEQLTVNELDVTELRELFARYEFKRWLADVEDGKWLQG 299

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P  +     E++                               E  P+    E   
Sbjct: 300 GKKGPAAVPFVKPESE-------------------------------EDAPK----EASS 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            LSQ     D Y  I++   +Q W+ ++   G  SF   TD +D   +  + I+++ +  
Sbjct: 325 VLSQ-----DGYVTILDESSLQDWIARINAAGLFSFDTETDGLDTLTANLVGISLA-IKP 378

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     +   ++D      +D+         +L+ LK   ENE   KIG N+K+DK V+
Sbjct: 379 GEAAYLPLGHDYLDAPTQLDRDT---------VLAQLKPLLENEAIGKIGQNLKFDKGVM 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            RYGI +RG   D ML SYVLDS    HD+ S+++++L +   T +EI    K+ +  ++
Sbjct: 430 ARYGIDLRGIVFDTMLESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAGKGKNQLTFNQ 489

Query: 533 ISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           I   Q   +A E+++V L+L    W  L P+   ++L  V++ +D P++ V+S+ME TG+
Sbjct: 490 IPLEQAAVYAAEDADVTLRLHETLWAKLEPQ---QELCQVFKNIDMPLVPVLSRMERTGV 546

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  +L + S E+++ L  LE   ++L+GE FNL+SPKQLG IL+ KL+ P   KT  G
Sbjct: 547 LIDTTILAEHSQELTQRLAELEVRAHELAGEAFNLASPKQLGAILYEKLQLPVIKKTPKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D+P+ K ILE R+L+K+KSTY D LP  IN  T+RVHT Y  A T
Sbjct: 607 APSTNEEVLAELAL-DHPLPKLILEHRELAKLKSTYTDKLPQMINPLTKRVHTSYHQAVT 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L 
Sbjct: 666 ATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPQGYQILAADYSQIELRIMAHLSRDAGLL 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F + LDIHR  AAE+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL I R+EA
Sbjct: 726 KAFSDGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINFGLIYGMSAFGLSRQLGIARNEA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  +  R   ERAAI
Sbjct: 786 QKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPDIHSRNAMSRKAAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI ++AMI++   L+  K    ML+Q+HDELVFEV    +   S  I + M
Sbjct: 846 NAPMQGTAADIIKKAMIAIDDWLQQEKPLATMLMQVHDELVFEVHHSVLDEVSAKIRNLM 905

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E  C+    L VPL+V+I   +NW +
Sbjct: 906 E-GCM---QLDVPLQVDIGTGSNWDQ 927


>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
 gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
          Length = 932

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 379/987 (38%), Positives = 573/987 (58%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+EI+ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEIFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFNNLDKIATLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +           A
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDEQLHQLFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E            G  +E + +R T    +++   ++  +             E    
Sbjct: 290 DVE-----------AGKWLEGKKERPTAQANNKYIVATEPAAAA-----------EVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     D+Y  I++ + +  W+++L+     +F   TD +D   S  I +        
Sbjct: 328 LSQ-----DNYQTILDEQTLADWIERLKKAEVFAFDTETDGLDTLSSNLIGL-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L  LK   E+E  LK+G N+K+D+
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRQWVLDTLKPLLEDEKALKVGQNLKFDQ 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI +RG   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+GE FNL+SPKQL  IL+ K + P   KT  G
Sbjct: 549 LIDQNILAAHSKELAIRLDELEKQAHELAGEPFNLASPKQLQVILYEKQQLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K I+E+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVIIEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+      GYV T+ GRR++  +INS  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDINSRNANRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L+       ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQESAPLVRVIMQVHDELVFEVHETVLESAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V +NW++
Sbjct: 908 MEQS----MQLAVPLKVDVGVGDNWEQ 930


>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
 gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
          Length = 917

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 369/975 (37%), Positives = 547/975 (56%), Gaps = 74/975 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL L+DG ++++RAF+A         G P NA+ G+  ML  +L    KE   +H AV F
Sbjct: 3   HLVLIDGPNYVFRAFHAVRHNLTNSKGEPTNAVFGYVQMLRSIL----KELGPTHVAVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRN +Y DYKA+RP +PE L  Q P +   T AF +  I ++ +EADD+IAT  
Sbjct: 59  DPKGGTFRNRMYADYKAHRPPMPEDLAAQWPSIFDVTDAFRLNRICVEDYEADDVIATLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             AE  G+ V+I+STDKDLMQLV     + DT+K +    E V ++WG+ P+++  L AL
Sbjct: 119 RQAEARGWDVSIVSTDKDLMQLVGERIWMLDTMKRKDYGPEEVKERWGVGPDRIQDLLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+PGIG KTA  LL+ YG+LE +L  A  IKQ+KRREN++E+A+ ARLS +
Sbjct: 179 AGDSADNIPGVPGIGPKTAVTLLEAYGDLEGVLTRAGEIKQQKRRENLIEFADDARLSYR 238

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L   VP+ I L+ L + + +  RL      LEF +++      +   AA   PVV  
Sbjct: 239 LVALDEQVPLPIELDDLAVTEPDRERLAELFTRLEFRRML----AEFSGPAAIDTPVVPQ 294

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK-INSEQTPQKLFLERLQKLSQYPIN 364
               E               ++TS  ++++ +  + +N E T Q L  E           
Sbjct: 295 AKPAE--------------PVRTSTPATVTPRIDRLVNDETTLQSLLAE----------- 329

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                           +   E I   +    T ++ A  ++ + ++ +T           
Sbjct: 330 ----------------LSSAELI---ALDTETTSLQAHDAELVGLSFATR--------AG 362

Query: 425 ETIFIDLSVHTSQD---STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           E  +I +  H S D      +    + +L+ LK   E+    K GHN+KYD  VL R GI
Sbjct: 363 EAWYIPVG-HRSTDLLVPAPQQLPLQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRAGI 421

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537
            + G   D ML++Y L   +    + S+A+ +L+Y      E+       +  D++  S 
Sbjct: 422 ELAGIAADSMLLAYCLYPAKYPPSLDSVAEDYLNYHCTPYSEVAGKGAKQVCFDEVPVSI 481

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E++++ L+L  LL  +L+ E  L  ++ ++ P+  V++ +E TG  +D ++L  
Sbjct: 482 ATPYACEDADIALRLTGLLSAQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAG 541

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S      +  LE  I+  +GEKFN+ SPKQLG +LF  L  P G KTK+GQW T  + L
Sbjct: 542 LSTGFGLRIAELESQIHAAAGEKFNIQSPKQLGVLLFETLAIPGGKKTKSGQWATGQEVL 601

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   ++ + + IL+ RQL+K+KSTY D+LP  I++ T RVHT ++ A T TGRL+S +
Sbjct: 602 EKL-ADEHEVPRLILQVRQLAKLKSTYTDALPKLIHRTTGRVHTSFNQAITTTGRLSSSD 660

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI++  G++IR+AFI+     L++ADYSQIELR++AH +    L   F N  DI
Sbjct: 661 PNLQNIPIRSAEGREIRKAFIAEEGHTLLAADYSQIELRLMAHFSGDAALCAAFANGEDI 720

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AA + G+ +E VS +MRR AK INF I+YG+S F LA QL I R EA  +I  YF 
Sbjct: 721 HAATAAAVNGIALEDVSGEMRRRAKAINFGILYGMSAFGLAKQLNISRGEAQTFIDTYFE 780

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P +  +++ T    R+ GYVET+ G R++  EI+S     R   ER AINAP+QGSAA
Sbjct: 781 RYPSVRGFMDDTLVLAREQGYVETLLGHRVYVPEISSSNGMRRAYAERTAINAPLQGSAA 840

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI +H+ L     A  ++LQ+HDEL+ E P ++I   S I+  +ME+A    + 
Sbjct: 841 DIIKVAMIHLHRRLRQEAPAAAIILQVHDELIVEAPVDQIDAVSAIMRQTMEQA----VT 896

Query: 958 LRVPLKVNIKVSNNW 972
           L VPL V+I   ++W
Sbjct: 897 LEVPLTVDIGSGHSW 911


>gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937]
 gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937]
          Length = 944

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 374/994 (37%), Positives = 569/994 (57%), Gaps = 80/994 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LLQ        SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGA-GEPTGAMYGVLNMLRSLLQQYHP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFR++++  YK++RP +P+ L  Q+ PL R+  +A G+P + + G EADD+I 
Sbjct: 61  VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRM-VKAMGLPLLSVSGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V I + DKD+ QLV+P   L +T+    +  + V  K+GIPP  ++  
Sbjct: 120 TLAQQAERAGKPVLISTGDKDMAQLVTPNITLINTMNNTILGPDEVCAKYGIPPSLIIDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  +  +I        K     + + 
Sbjct: 180 LALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYADLDKIASLTFRGAKTMAAKLEQN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS +L  ++TDV + +  E L + + +   L       EF + +           
Sbjct: 240 KELAYLSYQLATIKTDVELELGCEQLTVNEPDVAELHELFTRYEFKRWL----------- 288

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                 +++    ++  + S  +    K   E TP+    E   
Sbjct: 289 ---------------------ADVEDGKWLQGGRKSQPAVPFVKATVEATPK----EAAS 323

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            LSQ     D Y  I++ K +  W+++++T    SF   TD +D   +  + ++++   +
Sbjct: 324 VLSQ-----DGYVTILDEKVLLDWLERIKTAALFSFDTETDGLDTLTANLVGVSLAI--K 376

Query: 417 KDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHN 468
             + ++     + +     ++++S  S      T+     +L+ LK   E++   KIG N
Sbjct: 377 PGEAAYLPLGHITSRVYSSNIYSSTVSPATRMSTQLDRDRVLALLKPLLEDDGIRKIGQN 436

Query: 469 IKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSR 524
           +K+DK V+ RYGI +RG   D ML SYVLDS    HD+ S+++++L +   T +EI    
Sbjct: 437 LKFDKGVMARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAGKG 496

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           K+ +  D+I  +Q   +A E+++V L+L    W  L P+   ++L  V++ +D P++ V+
Sbjct: 497 KNQLTFDQIPLAQASVYAAEDADVTLRLHETLWAKLEPQ---QELRKVFQNIDMPLVPVL 553

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           S++E TG+ ID  +L + S E+++ L  LE   ++L+GE FNLSSPKQLG IL+ KL+ P
Sbjct: 554 SRIERTGVLIDTTILAEHSRELTQRLAELEVQAHELAGEAFNLSSPKQLGAILYEKLQLP 613

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KT  G   T  + L ++   D P+ K ILE R L+K+KSTY D LP  IN  T+RVH
Sbjct: 614 VIKKTPKGAPSTNEEVLAELAL-DYPLPKLILEHRGLAKLKSTYTDKLPQMINPLTRRVH 672

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH
Sbjct: 673 TSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRILAADYSQIELRIMAH 732

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F + LDIHR  AAE+FG+ +++V+ + RR AK INF +IYG+S F L+ Q
Sbjct: 733 LSRDAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAFGLSRQ 792

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L IPRSEA  Y+  YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S   + R
Sbjct: 793 LAIPRSEAQKYMNLYFERYPGVQEYMERTRQQAVDQGYVSTLDGRRLYLPDIHSRNVNSR 852

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAINAP+QG+AADI ++AMI++   L   K    ML+Q+HDELVFEV    +  A
Sbjct: 853 KAAERAAINAPMQGTAADIIKKAMIAIDAWLRQEKPLVTMLMQVHDELVFEVHHSVLDEA 912

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           S  I + ME  C+    L VPL+V+I   +NW +
Sbjct: 913 SAKIRNLME-GCM---QLDVPLQVDIGTGSNWDQ 942


>gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 932

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 377/987 (38%), Positives = 569/987 (57%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +    V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPLEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + I  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P         NK  A              + + +++ T+ ++ E             
Sbjct: 301 KDRPTA----QASNKAFA------------APESAPVAEVTAVLSQE------------- 331

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++ K +  W+++L+     +F   TD +D   S  I +        
Sbjct: 332 ---------NYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGL-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+D+
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLAQLKPLLEDDKALKVGQNLKFDQ 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI +RG   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V  NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGYNWDQ 930


>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
 gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
          Length = 926

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 376/984 (38%), Positives = 555/984 (56%), Gaps = 83/984 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML KL     K+   S  AVIFD
Sbjct: 8   LLLVDGSSYLYRAFHAMPPLTTS-SGQPTGAVRGVVNMLRKL----AKDYPESPIAVIFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IY DYKANRP +P+ L  Q+  +    +A G+P I   G EADD+I TY  
Sbjct: 63  AKGKTFRDDIYSDYKANRPPMPDDLRAQIEPLHTIIRAMGLPLIIQDGVEADDVIGTYAQ 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V + + DKD+ QLVS    L +T+ E  +DI  V +K+GIPP  ++   AL 
Sbjct: 123 QATEKGIPVVVSTGDKDMAQLVSEHVTLVNTMTETVMDIAGVNEKFGIPPSLIIDFLALM 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAETA 240
           GD +DNIPG+PG+G KTA  LLQ  G++E+I  N  ++        K   + + +  + A
Sbjct: 183 GDKVDNIPGVPGVGEKTALALLQNLGSVEDIYANLDKVPTLEVRGAKSLAKKLEDNRDKA 242

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +L  ++ DV +   LE LI  D +   L++    LEF   +               
Sbjct: 243 FLSYELATIKLDVELEHSLEELIPVDPDNDALLALFTELEFKGWV--------------- 287

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                            TE+ +    K  + S         N++Q  ++      ++  +
Sbjct: 288 -----------------TELSKGGGTKAKKASP--------NAKQAAEEAPAAAPEEAVE 322

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             IN D+Y  I+    ++ WV +L      +F   T +++   +K + +           
Sbjct: 323 --INRDNYETILTEASLEAWVDRLSKAELFAFDTETTSLNYMEAKVVGV----------- 369

Query: 421 SFKV---ETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475
           SF V   E  ++        D  G    L++E +L  LK   E+E+  K+G N+KYD  V
Sbjct: 370 SFAVAPGEAAYVPFG----HDYLGAPEQLSEEQVLGKLKPLLEDENVKKVGQNLKYDASV 425

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L  +GI+++G   D ML SYV++S  + HD+ ++A   L +T    +EI       +  +
Sbjct: 426 LANHGIALQGIAFDTMLESYVVNSTANRHDMDTLALAHLGHTNISFEEIAGKGAKQLTFN 485

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q   +A E++++ L+L   L P++  VE +  ++E ++ P++ V+S++E TG  I
Sbjct: 486 QIQLDQAAPYAAEDADITLRLHQALWPQVEAVEGIKSLFENVELPLVPVLSKVERTGALI 545

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L Q SAE++ +L  ++   ++L+GE+FNL+SPKQLG ILF KL  P   KTKTG  
Sbjct: 546 DATILGQQSAELAADLERIQREAWELAGEEFNLASPKQLGVILFEKLGIPVIKKTKTGAP 605

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+   +LE R L+K+KSTY D LP  IN  T RVHT Y+ A T T
Sbjct: 606 STAEEVLQELAL-DYPLPALLLEQRGLAKLKSTYTDKLPTMINPHTGRVHTSYNQAVTAT 664

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPIKT+ G+++R+AFI+P   ++++ADYSQIELRI+AH++    L   
Sbjct: 665 GRLSSTDPNLQNIPIKTEAGRRVRKAFIAPEGYRIVAADYSQIELRIMAHLSGDEGLTNA 724

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LD+H   AAE+FG ++E V+P+ RR AK INF +IYG+S F LA QL I R++A  
Sbjct: 725 FNQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINFGLIYGMSAFGLARQLHIGRNDAQR 784

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF R+PG+  Y+E  + F +++GYVET+ GRR++  EIN+     R   ER AINA
Sbjct: 785 YIDTYFDRYPGVARYMEDIRVFAKEHGYVETLMGRRLYLPEINASNGMRRQAAERTAINA 844

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QGSAADI ++AMI V K L   K+  KM++Q+HDELV EV E++I   +  +   M  
Sbjct: 845 PMQGSAADIIKKAMIDVDKWLSTLKVDAKMIMQVHDELVLEVAEDQIEPVTATLCDIMSA 904

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + L VPL V   V  NW E
Sbjct: 905 A----LKLDVPLLVEAGVGMNWDE 924


>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 932

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 377/987 (38%), Positives = 570/987 (57%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + I  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P         NK  A              + + +++ T+ ++ E             
Sbjct: 301 KDRPTA----QASNKAFA------------APESAPVAEVTAVLSQE------------- 331

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++ K +  W+++L+     +F   TD +D   S  I +        
Sbjct: 332 ---------NYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGL-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+D+
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLAQLKPLLEDDKALKVGQNLKFDQ 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI +RG   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEIPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILVAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V  NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGYNWDQ 930


>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
 gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
          Length = 932

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 381/987 (38%), Positives = 568/987 (57%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNS-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  +  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSHLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + I  + L +   +  +L+      EF + +  V      D  
Sbjct: 241 DVAYLSYQLATIKTDVELDITCDQLTVSSPDNEQLLQLFSRYEFKRWLVDVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P       T NK                          S + +E  P    +E    
Sbjct: 301 KERPT----GQTSNK--------------------------SFVAAESAPA---VEVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     ++Y  I++ K + +W+++L+     +F   TD +D   S  I +        
Sbjct: 328 LSQ-----ENYHTILDEKSLMEWIERLKKAEVFAFDTETDGLDTLSSNLIGM-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L +  +L+ LK   ENE  LK+G N+K+D+
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRNWVLATLKPLLENEKALKVGQNLKFDQ 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI +RG   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG  EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGGLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIRDL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V  NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGYNWDQ 930


>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
 gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
          Length = 932

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 379/987 (38%), Positives = 567/987 (57%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK   AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKADHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELKVSAPDDDQLHQLFSRYEFKRWLVDVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P       T N+  A+   ++                              +E    
Sbjct: 301 KDRPTA----QTSNRAFAVAEPVEA-----------------------------VEVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     ++Y  I++ K +  W+++L+     +F   TD +D   S  I I        
Sbjct: 328 LSQ-----ENYQTILDEKSLADWIERLKKAEVFAFDTETDGLDTLSSNLIGI-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   DS  +  L ++ +L+ LK   E++  LK+G N+K+D+
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDSPAQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDQ 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI +RG   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLSIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V +NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGDNWDQ 930


>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
 gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
          Length = 937

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 367/981 (37%), Positives = 548/981 (55%), Gaps = 90/981 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L+    G P  A+ G  NML +L    RK+   S  AV+FD
Sbjct: 32  LVLVDGSSYLYRAYHALPPLTNSK-GQPTGAVKGVVNMLRRL----RKDYPQSPIAVVFD 86

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANRP +PE L PQ+  +    QA G+P + I+G EADD+I T   
Sbjct: 87  AKGKTFRDELFAEYKANRPPMPEDLRPQVQPIHDIVQAMGLPLLVIEGVEADDVIGTLAR 146

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++   V I + DKD+ QLV+    L +T+ +  +DI  V  K+G  PE M+   AL 
Sbjct: 147 QATEQKRDVIISTGDKDMAQLVNEHVTLVNTMTDSVLDIPGVHAKYGFGPELMIDYLALM 206

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240
           GD +DNIPG+PG+G KTA  L+Q  G+L+ I  +  +++       K   E ++E+ + A
Sbjct: 207 GDKVDNIPGVPGVGEKTAQGLIQGIGSLDAIYTDLEKVRSLSFRGAKTMPEKLIEHRDMA 266

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +L  ++TDV + +  E L  +  +  +L    + +EF   I  ++ T         
Sbjct: 267 YLSYQLATIKTDVELPMGPEALHNQAADNAKLRVLFEEMEFKSWIAELSNT--------- 317

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                        I I++++D                         P K  +E+      
Sbjct: 318 ----------ESAIEIDSQVD------------------------VPTKTAIEK------ 337

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I    +   W+ +L+     SF   T ++D   ++ + ++++T       
Sbjct: 338 ------HYDIIFTESEFATWLARLQAATEFSFDTETTSLDVMEARIVGVSVAT------- 384

Query: 421 SFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +   +    D  G    L+ E +L+ LK   E+EH +KIG NIKYD+ VL  
Sbjct: 385 -----EPGVAAYIPCGHDYMGAPEQLSLEWVLNQLKPLLEDEHKIKIGQNIKYDRSVLLN 439

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           YGI++RG + D ML SYV +S  S H++  +AQ +L Y   T +E+       +  +++ 
Sbjct: 440 YGITLRGIKYDTMLESYVWNSVASRHNMDDLAQTYLDYKTVTFEELAGKGVKQLTFNQLK 499

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                 +A E++++ L+L     P+L  +  L  V+  ++ P++ V+S +E  G  +D  
Sbjct: 500 IEDAGHYAAEDADITLRLHQFFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAK 559

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL Q S E+ + ++ LE   Y+L+G++FNLSSPKQLG ILF +L+ P   KT TG   T 
Sbjct: 560 LLGQHSIELGERMVQLERKAYELAGQEFNLSSPKQLGVILFEQLQLPVIKKTPTGTPSTA 619

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K I+E+R ++K+KSTY D LP  IN  T R+HT Y  A   TGRL
Sbjct: 620 EEVLQELAL-DYPLPKVIMEYRAMAKLKSTYTDKLPLMINPATGRIHTNYHQAVAATGRL 678

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPIKTD G++IR+AFI+P   KL++ADYSQIELRI+AH++  + L   FE 
Sbjct: 679 SSQDPNLQNIPIKTDEGRRIRQAFIAPAGYKLVAADYSQIELRIMAHLSSDSGLLSAFEK 738

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LD+HR  AAE+FGV ++ V+P+MRR AK INF +IYG+S F LA QL + R+EA  YI 
Sbjct: 739 GLDVHRATAAEVFGVALDSVTPEMRRSAKAINFGLIYGMSAFGLAKQLHVGRNEAQQYID 798

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+   +    + GYVET+FGRR++  +IN+   + +   ER AINAP+Q
Sbjct: 799 RYFERYPGVQRYMNNIRAQAHEQGYVETLFGRRLYLPDINAKNKNFQLAAERTAINAPMQ 858

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI+V   L +  L  K+++Q+HDELV EV E  +      +V  M  A  
Sbjct: 859 GTAADIIKTAMIAVDNWLVEAGLDAKLIMQVHDELVLEVAESCLDEVCTGVVARMSAAA- 917

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L VPL V+  V NNW E
Sbjct: 918 ---RLNVPLIVDAGVGNNWDE 935


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 373/979 (38%), Positives = 554/979 (56%), Gaps = 85/979 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K + L L+DGSS+++RAF+A P L+    G P  A+ G  NML KLL     E    +
Sbjct: 1   MVKNSVLILIDGSSYLFRAFHALPPLTTS-KGQPTGAVYGVINMLRKLL----DEHQPHY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD    TFR+E++  YKA+RP +PE L  Q+P +    +A G+P + ++G EADD+
Sbjct: 56  VAVIFDAKGKTFRDELFEQYKAHRPPMPEELACQIPPLHDLIRALGLPLLCVEGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +     I S DKDL QLV+    L ++  + K+D   V  K+ + PE++V
Sbjct: 116 IGTLAQQASGQHLETLISSGDKDLAQLVNHHVSLVNSTNQSKLDPAGVKAKFNVSPEQIV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD IDNIPGIPGIG KTAA LL +Y +L+ I+ +A  IK  K  EN+  +    
Sbjct: 176 DYLALVGDPIDNIPGIPGIGPKTAAKLLDQYHDLDQIMAHAQEIK-GKVGENLRLHLAQL 234

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L+R+L  +R D+P+ +  + L  +  + P L      LEF   +  +            
Sbjct: 235 PLARQLATVRRDLPLELGPKDLQCQPPDIPTLRELYGTLEFKTWLREL------------ 282

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                          +E E DR ++  TS  SS                           
Sbjct: 283 ---------------LEKEKDRASSPNTSTDSS--------------------------- 300

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 SY  +++ +  ++WV++LET    +F + T+++D   ++ + ++ +   +    
Sbjct: 301 -----PSYETVLSEESFERWVKRLETAELFAFDLETNSLDYIEAEIVGLSFAIKPK---- 351

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E  ++ L+     D+       + +L+ L+   ++ +  K+G N+K+D+ VL  YG
Sbjct: 352 ----EAAYVPLA--HDYDAAPLQLAREGVLARLQPLLQDSNRGKVGQNLKFDRNVLANYG 405

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
           I + G   D ML SYVL S  S H++ S+A K+L   + + +E+       +P +++   
Sbjct: 406 IELEGIRHDSMLESYVLHSTASRHNMDSLALKYLQRSTISYEEVAGKGAKQLPFNQVPID 465

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E++++ LQL     P+L  E+ L  +Y+ L+ P+I V+S+ME  G+QID   L
Sbjct: 466 KATRYAAEDADICLQLHHYFWPRLQQEEALCRLYQELEIPLIPVISRMERNGVQIDATQL 525

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K  SAE++  L  +E+  ++L+GE FNL+SPKQ+  IL+ KLK P   KT TGQ  T   
Sbjct: 526 KAHSAELTARLEKIEQEAFELAGEPFNLASPKQIQAILYDKLKLPITRKTPTGQPSTAET 585

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++   D P+ + +LE+R LSK+KSTY D LP  +N RT RVHT Y  A T TGRL+S
Sbjct: 586 VLQELAL-DYPLPQLLLEYRALSKLKSTYTDRLPLQVNPRTGRVHTSYHQAVTATGRLSS 644

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI++  G++IR+AFI+PP   L++ADYSQIELRI+AH++    L   FE   
Sbjct: 645 SDPNLQNIPIRSAEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAFEAGE 704

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH+  AAEIF   +E V+P+ RR AK INF +IYG+S   LA QL I RS A  YI+RY
Sbjct: 705 DIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSAHGLAQQLGISRSAAQHYIERY 764

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           FHR+PG+  Y++      RQ GYVET+FGRR++  EI+S ++  RN  ER AINAP+QG+
Sbjct: 765 FHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQAQRRNQAERMAINAPMQGT 824

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAM+   + L+      +M++Q+HDELVFEV E E+ T +  I  +M  A    
Sbjct: 825 AADIIKRAMLRADQWLQKQGSNARMIMQVHDELVFEVAEAELDTTTAAIRENMAGAA--- 881

Query: 956 INLRVPLKVNIKVSNNWQE 974
             ++VPL V +    NW E
Sbjct: 882 -QIKVPLIVEMGSGANWDE 899


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 374/983 (38%), Positives = 570/983 (57%), Gaps = 70/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISSLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +           A
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELKVTAPDDDQLYQLFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E            G  ++ + DR T   +++          + +E +P    +E    
Sbjct: 290 DVE-----------AGKWLDGKKDRPTAQSSNKVF--------VAAESSPA---VEVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     ++Y  I++ K +  W+++L+     +F   TD +D   S  I  + + +   
Sbjct: 328 LSQ-----ENYQTILDEKSLSDWIERLKNAEVFAFDTETDGLDTLSSNLIGFSFA-VAPG 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      ++          +L+ LK   E+E  LK+G N+K+D+ +L 
Sbjct: 382 EAAYLPVAHDYLDAPTQLDRNW---------VLAQLKPLLEDEKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I +RG   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ +  ++I
Sbjct: 433 RYDIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDQGLLTAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +EKV+   RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME++
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQS 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPLKV++ V +NW +
Sbjct: 912 ----MQLAVPLKVDVGVGDNWDQ 930


>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 932

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 380/987 (38%), Positives = 577/987 (58%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  +  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFNHLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + I  + L +   +  +L       EF + +           A
Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E            G  ++ + DR T   +++        + +  E  P     E    
Sbjct: 290 DVE-----------AGKWLDGKKDRPTAQASNK--------AFVAPESAP---VAEVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     ++Y  I++ K +  W+++L+     +F   TD +D   S  I +        
Sbjct: 328 LSQ-----ENYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGL-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+D+
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLAQLKPLLEDDKALKVGQNLKFDQ 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI +RG   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V  NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGYNWDQ 930


>gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
 gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
          Length = 929

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 369/986 (37%), Positives = 559/986 (56%), Gaps = 79/986 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G    A+ G  NML  LLQ        SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLQQYSP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YKA+RP +PE L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P+  L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAVQAEKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + ++ 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGLSFRGAKTMAPKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDA 296
           E A LS +L  ++TDV + +  + L + + +   L       EF + ++ + + T+    
Sbjct: 241 EVAYLSYQLATIKTDVELELSCDQLTVNELDVDELHRLFSRYEFKRWLSDIESGTWMQGK 300

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            + +PV     T  N    +E  ++ D     S                           
Sbjct: 301 KSSQPV----QTVSNA--VVEQAVEEDNVPTLSA-------------------------- 328

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                    D Y  I++ K +  WV++L+     +F   TD +D   +  I ++ + +  
Sbjct: 329 ---------DGYVTILDEKTLLDWVERLKLADVFAFDTETDGLDTLTANLIGLSFA-IKP 378

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     +   ++D     + D   + T    +L+ LK   E+E  LKIG N+K+DK V+
Sbjct: 379 GEAAYLPLAHDYLD-----APDQLDRAT----VLALLKPLLEDEKLLKIGQNLKFDKGVM 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            RY I +RG   D ML SYVLDS    HD+ S+A+++L +   T +EI    K+ +  ++
Sbjct: 430 QRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTITFEEIAGKGKNQLTFNQ 489

Query: 533 ISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           I+  Q   +A E+++V L L    W  L+P      L  V++ +D P++ V+S++E TG+
Sbjct: 490 IALEQAGPYAAEDADVTLHLHQTLWGKLQPH---ADLCQVFQTIDMPLVPVLSRIERTGV 546

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  +L + S E++  L  LE   Y+L+GE+FNLSS KQL  IL+ K K P   KT  G
Sbjct: 547 LIDPAILAEHSKELTTRLAELEIQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKTPKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  A T
Sbjct: 607 APSTNEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVT 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH++    L 
Sbjct: 666 ATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDEGLL 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F N LDIHR  A+E+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL IPRSE+
Sbjct: 726 NAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSES 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ +Y+E+T+    ++GYV T+ GRR++  +I+S  +  R   ERAAI
Sbjct: 786 QKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI ++AMI++   L+      KM++Q+HDELVFE+ ++ I   S   +  +
Sbjct: 846 NAPMQGTAADIIKKAMIAIDDWLQKDAPKVKMIMQVHDELVFEI-DDSIVEESISKIKVL 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            + C+    L VPL+V+I    NW +
Sbjct: 905 MEGCM---QLNVPLQVDIGTGMNWDQ 927


>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
 gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
 gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
 gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
          Length = 932

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 381/987 (38%), Positives = 574/987 (58%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +           A
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E            G  ++++ DR T   +SQ        S + ++  P     E    
Sbjct: 290 DVE-----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     ++Y  I++ K +  W+++L+     +F   TD +D      I +        
Sbjct: 328 LSQ-----ENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGM-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+DK
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDK 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI ++G   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           MEK+    + L VPLKV++ V  NW +
Sbjct: 908 MEKS----MQLAVPLKVDVGVGANWDQ 930


>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10]
 gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
 gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10]
 gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
 gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
 gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 932

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 380/987 (38%), Positives = 574/987 (58%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLLLVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +           A
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E            G  ++++ DR T   +SQ        S + ++  P     E    
Sbjct: 290 DVE-----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     ++Y  I++ K +  W+++L+     +F   TD +D      I +        
Sbjct: 328 LSQ-----ENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGM-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+DK
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDK 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI ++G   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V  NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGANWDQ 930


>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
 gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
          Length = 932

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 380/987 (38%), Positives = 574/987 (58%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +           A
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E            G  ++++ DR T   +SQ        S + ++  P     E    
Sbjct: 290 DVE-----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     ++Y  I++ K +  W+++L+     +F   TD +D      I +        
Sbjct: 328 LSQ-----ENYQTILDEKALSDWIERLKAAEVFAFDTETDGLDTLSCNLIGM-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+DK
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDK 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI ++G   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V  NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGANWDQ 930


>gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 929

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 372/989 (37%), Positives = 562/989 (56%), Gaps = 85/989 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YKA+RP +PE L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P+  L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAVQAEKAGKPVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+++  N  +I +      K     + ++ 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAELSFRGAKTMAPKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L + + +   L       EF + +            
Sbjct: 241 DVAYLSYQLATIKTDVELDLSSEQLTVNEPDVDELHRLFSRYEFKRWL------------ 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                               ++++  T ++  + S      SK+  EQ  ++        
Sbjct: 289 --------------------SDVESGTWLEGKKSSQPVPAVSKVVVEQAAEE-------- 320

Query: 358 LSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            S  P ++ D Y  I++ + +  W+++L+     +F   TD +D   +  I +       
Sbjct: 321 -SNAPALSADGYVTILDEETLLDWIERLKQAEVFAFDTETDGLDTLTANLIGL------- 372

Query: 417 KDDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               SF +   E  ++ L+ H   D+  +    K +L+  K   E+E  LKIG N+K+DK
Sbjct: 373 ----SFAIKPGEAAYLPLA-HDYLDAPEQLDRAK-VLALFKPLLEDEKLLKIGQNLKFDK 426

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            V+ RY I +RG   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 427 GVMQRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 486

Query: 530 IDKISDSQVQEHAIENSNVIL----QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            ++I+  Q   +A E+++V L    +LW  L+P      L  V++ +D P++ V+S++E 
Sbjct: 487 FNQIALEQAGPYAAEDADVTLHLHQKLWGKLQPH---ADLCQVFQTIDMPLVPVLSRIER 543

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG+ ID  +L + S E++  L  LE   Y+L+GE+FNLSS KQL  IL+ K K P   KT
Sbjct: 544 TGVLIDPAILAEHSKELTTRLAELETQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKT 603

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             G   T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  
Sbjct: 604 PKGAPSTNEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQ 662

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A T TGRL+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH++   
Sbjct: 663 AVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDK 722

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LDIHR  A+E+FG  ++KV+ + RR AK INF +IYG+S F L+ QL IPR
Sbjct: 723 GLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPR 782

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           SE+  Y+  YF R+PG+ +Y+E+T+    ++GYV T+ GRR++  +I+S  +  R   ER
Sbjct: 783 SESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAER 842

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QG+AADI ++AMI++   L+      KM++Q+HDELVFE+ +  I  +   I 
Sbjct: 843 AAINAPMQGTAADIIKKAMIAIDDWLQKDAPQVKMIMQVHDELVFEIHDSVIEESISKIK 902

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME  C+    L VPL+V+I    NW E
Sbjct: 903 TLME-GCM---ELNVPLQVDIGTGMNWDE 927


>gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 929

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 374/989 (37%), Positives = 560/989 (56%), Gaps = 85/989 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YKA+RP +PE L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHQMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P+  L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAVQAEKAGKPVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + ++ 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGLSFRGAKTMAPKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  + L + + +   L       EF + +            
Sbjct: 241 DVAYLSYQLATIKTDVELELSCDQLTVNELDVDELHRLFSRYEFKRWL------------ 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                               ++I+  T ++  + S      S    EQ  ++        
Sbjct: 289 --------------------SDIESGTWMQGKKSSQPVQAVSNAVVEQVAEE-------- 320

Query: 358 LSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
               P ++ D Y  I++ K +  WV++L+     +F   TD +D   +  I +       
Sbjct: 321 -DNAPTLSADGYVTILDEKTLLDWVERLKLAEVFAFDTETDGLDTLTANLIGL------- 372

Query: 417 KDDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               SF +   E  ++ L+ H   D+  +   TK +L+  K   E+E  LKIG N+K+DK
Sbjct: 373 ----SFAIKPGEAAYLPLA-HDYLDAPEQLDRTK-VLALFKPLLEDEKLLKIGQNLKFDK 426

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            V+ RY I +RG   D ML SYVLDS    HD+ S+A+++LS+   T +EI    K+ + 
Sbjct: 427 GVMQRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLT 486

Query: 530 IDKISDSQVQEHAIENSNVIL----QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            ++I+  Q   +A E+++V L    +LW  L+P      L  V++ +D P++ V+S++E 
Sbjct: 487 FNQIALEQAGPYAAEDADVTLHLHQKLWGKLQPH---ADLCQVFQTIDMPLVPVLSRIER 543

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG+ ID  +L + S E++  L  LE   Y+L+GE+FNLSS KQL  IL+ K K P   KT
Sbjct: 544 TGVLIDPAILAEHSKELTIRLAELETQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKT 603

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             G   T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  
Sbjct: 604 PKGAPSTNEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQ 662

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A T TGRL+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH++   
Sbjct: 663 AVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDK 722

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LDIHR  A+E+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL IPR
Sbjct: 723 GLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPR 782

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           SE+  Y+  YF R+PG+ +Y+E+T+    ++GYV T+ GRR++  +I+S  +  R   ER
Sbjct: 783 SESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAER 842

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QG+AADI ++AMI++   L+      KM++Q+HDELVFE+ +  I  +   I 
Sbjct: 843 AAINAPMQGTAADIIKKAMIAIDDWLQKDTPKVKMIMQVHDELVFEIHDSVIEESISKIK 902

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME  C+    L VPL+V+I    NW E
Sbjct: 903 ALME-GCM---QLNVPLQVDIGTGMNWDE 927


>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
 gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
          Length = 932

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 376/983 (38%), Positives = 570/983 (57%), Gaps = 70/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + I  + L +   +  +L       EF + +           A
Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELKVSPPDDDQLHQLFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E            G  +E + DR T        + ++  + + SE        E    
Sbjct: 290 DVE-----------AGKWLEGKKDRPT--------AQTNNRAFVTSEPVAAA---EVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     D+Y  I++ K +  W+++L+     +F   TD +D   S  I ++ + +   
Sbjct: 328 LSQ-----DNYQTILDEKSLADWIERLKKAEVFAFDTETDGLDTLSSNLIGLSFA-VAPG 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L+ LK   E++  LK+G N+K+D+ +L 
Sbjct: 382 EAAYLPVAHDYLDAPAQLDRDW---------VLAQLKPLLEDDKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I++RG   D ML SYVL+S    HD+ S+A+++L++   T +EI    K+ +  ++I
Sbjct: 433 RYDINLRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ V+S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKQVFQEIEMPLLPVLSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  I+  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMISPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  EI+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPEIHSRNATRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +  Q +   ME++
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQEPEPKVRVIMQVHDELVFEVHESVLESTEQKVRELMEQS 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPLKV+I V +NW +
Sbjct: 912 ----MQLAVPLKVDIGVGDNWDQ 930


>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
 gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
 gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
          Length = 932

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 380/987 (38%), Positives = 574/987 (58%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +           A
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E            G  ++++ DR T   +SQ        S + ++  P     E    
Sbjct: 290 DVE-----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     ++Y  I++ K +  W+++L+     +F   TD +D      I +        
Sbjct: 328 LSQ-----ENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGM-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+DK
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDK 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI ++G   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V  NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGANWDQ 930


>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 929

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 372/990 (37%), Positives = 570/990 (57%), Gaps = 87/990 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRTQIEPLHQMVEAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEKEG AV I + DKD+ QLV+P   L +T+    +  E V++K+G+PPE ++   
Sbjct: 121 LALQAEKEGRAVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVVEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G +++I  N  +I        K   + ++++ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGGMDDIFANLDKIAGLSFRGAKTLADKMVQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV +      L +++ +  +L       EF + ++ VA        
Sbjct: 241 DVAYLSYQLATIKTDVELDKTCVALSVKEPDTEKLHQLFSRYEFKRWLSDVANGDWLAEK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +PV                                    S  N E +P +       K
Sbjct: 301 GKKPV------------------------------------STGNDESSPTE------DK 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI--AISTLD 415
            +   +++D+Y  I++ +   +W++KL+     +F   TD++D   +  + +  AIS  D
Sbjct: 319 SAAATLSSDNYQTILDQQSFDEWIEKLKKASVFAFDTETDSLDTLTANLVGVSFAISAGD 378

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDK 473
                       ++ L      D  G    L +E+ L+ LK   E+ + LKIG NIK+D+
Sbjct: 379 ----------AAYLPLG----HDYLGAPEQLDREVVLAALKPLLEDSNLLKIGQNIKFDR 424

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
            VL RYGI ++G   D ML SYVL+S  G   HD+ S+A++ L++   T +EI    K+ 
Sbjct: 425 GVLARYGIELQGIAYDTMLESYVLNSVAGMGRHDMDSLAERHLNHKTTTFEEIAGKGKNQ 484

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQME 584
           +  ++++  Q   +A E+++V L L   + P+L  EK   L  V+   + P++ V+S+ME
Sbjct: 485 LTFNQVAVEQAAMYAAEDADVTLLLHQAMWPQL--EKAPTLEKVFLNTEMPLVMVLSRME 542

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
            TG+ ID ++L + S EI+  L  LE+  ++L+GE FNL+SPKQL  ILF KL+ P   K
Sbjct: 543 RTGVLIDANILAEHSKEITARLDELEKEAHELAGEVFNLASPKQLQTILFEKLQLPVVKK 602

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T  G   T  + LE++    + + K ILE R L+K+KSTY D LP  ++  T+RVHT Y 
Sbjct: 603 TPNGAPSTNEEVLEEL-ADTHALPKVILEHRGLAKLKSTYTDKLPQMVHPLTKRVHTSYH 661

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A T TGRL+S +PNLQNIP++   G++IR+AF++P   ++++ADYSQIELRI+AH+++ 
Sbjct: 662 QAVTATGRLSSRDPNLQNIPVRNKEGRRIRQAFVAPEGYRIMAADYSQIELRIMAHLSQD 721

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    DIHR  AAE+FG+ +E+V+ + RR AK INF +IYG+S F L+ QL IP
Sbjct: 722 QGLLKAFAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMSAFGLSRQLGIP 781

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  Y+  YF R+PG+  Y+E+T+    + GYVET+ GRR++  +I S  +  R   E
Sbjct: 782 RGEAQRYMDLYFERYPGVLAYMERTRKQAEEQGYVETLDGRRLYLSDIKSRNAMRRKAAE 841

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AINAP+QG+AADI ++AMI+V   +   +   +M++Q+HDELVFEV E E+  A Q I
Sbjct: 842 REAINAPMQGTAADIIKKAMIAVDDWIVSEEPKVRMIMQVHDELVFEVHESELEYAEQKI 901

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              MEK+ +    L VPLKV++ + +NW +
Sbjct: 902 RELMEKSMV----LDVPLKVDVGIGDNWDQ 927


>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
 gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
          Length = 932

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 374/987 (37%), Positives = 571/987 (57%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDEQLHQLFSRYEFKRWLADVEEGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P       T NK            T   ++ +  ++ T+ ++ E             
Sbjct: 301 KERPT----GQTSNK------------TFVATEPAPAAEVTAVLSQE------------- 331

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++ K +  W+++L+     +F   TD +D   +  I +        
Sbjct: 332 ---------NYHTILDEKSLADWIERLKKADVFAFDTETDGLDTLSNNLIGL-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+D+
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDQ 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI +RG   D ML SYVL+S    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIELRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEQAGPYASEDADVTLQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPQGYRIMAADYSQIELRIMAHLSQDEGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+ +EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 TAFAAGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V +NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGDNWDQ 930


>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 932

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 379/987 (38%), Positives = 573/987 (58%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLLLVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +           A
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E            G  ++++ DR T   +SQ        S + ++  P     E    
Sbjct: 290 DVE-----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAV 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     ++Y  I++ K +  W+++L+     +F   TD +D      I +        
Sbjct: 328 LSQ-----ENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGM-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+DK
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDK 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI ++G   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E  G+
Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERAGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V  NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGANWDQ 930


>gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 696

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 306/704 (43%), Positives = 452/704 (64%), Gaps = 19/704 (2%)

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
           EFT L  RVA   D DA+++EP  ++ +   +     + ++        SQ  S +   +
Sbjct: 1   EFTSLTRRVAEATDTDASSVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAA 58

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
           + +   TP+ L   R  +     I+  +Y  I +   ++QW+ +    G  +F   T ++
Sbjct: 59  EPDQGYTPKALAEGRAAQAIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSL 118

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYL 453
           D   ++ +  +++    K          ++ L   + + D  G   +  +I     L+ L
Sbjct: 119 DPMQAELVGFSLALAPGK--------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAAL 170

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           K+  E+   LKI  N+KYD LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL
Sbjct: 171 KRVLEDASILKIAQNMKYDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWL 230

Query: 514 SYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            +T    K++  S KS++  D +   +   +A E+++V L+LW +L+P+L  E L+ VYE
Sbjct: 231 GHTPIAYKDVAGSGKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYE 290

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
           RL++P++DV+++ME  GI +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLG
Sbjct: 291 RLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLG 350

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           DILF K+  P  +KTKTGQW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP 
Sbjct: 351 DILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPG 410

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            IN +T+RVHT Y++AST TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADY
Sbjct: 411 FINPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADY 470

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LAH+A I  L Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIY
Sbjct: 471 SQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIY 530

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS F LA QL IPR EA  YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY 
Sbjct: 531 GISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYP 590

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +I +    +R  NERAAINAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+F
Sbjct: 591 DIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIF 650

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EVPE E+     ++   ME A +P ++L VPL+V+ + ++NW E
Sbjct: 651 EVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNWDE 694


>gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T]
 gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T]
          Length = 939

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 370/981 (37%), Positives = 555/981 (56%), Gaps = 60/981 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  AI G  +ML +L  + + E      A +FD
Sbjct: 4   LLLVDGSSYLYRAFHALPDL-RNSQGEPTGAIRGVLSMLRRLESDYKAE----FRACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP+YK++RP +P+ L  Q+  +  A +A G P + ++G EADD+I T T 
Sbjct: 59  AKGKTFRDDWYPEYKSHRPPMPDDLRAQIAPLHEAVRAEGWPLLSVEGVEADDVIGTLTR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +A + G+ V I + DKDL QLV P     +T+ EE +D   V  K+G+PPE++V   AL 
Sbjct: 119 LALERGWEVVISTGDKDLTQLVRPGVRWVNTMSEEVLDEAGVAAKFGVPPERIVDYLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L EYG L+N++ NA ++  K   EN+  + +   L RKL
Sbjct: 179 GDTVDNVPGVEKCGPKTAVKWLTEYGTLDNLVANADKVGGKVG-ENLRRHLDFLPLGRKL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN-IEPVVLD 305
           V + TDV + + L+ L     +   L +  +  EF   +  +    +  AA+        
Sbjct: 238 VTVATDVELPVGLDELPARADDKAALRALYERFEFKSWLKDLDGGAESVAASKAASDARR 297

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
            +  EN+G   +T I    T    +    +    +   + TP                  
Sbjct: 298 FDRQENRG---QTPISEAATTTPGEGGVCAISADEQMKDLTP------------------ 336

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  I++      W+ K+      +F   T ++D   ++ + +           SF VE
Sbjct: 337 -VYLPILDWPTFDAWLAKISAAELTAFDTETTSLDPMAARLVGM-----------SFAVE 384

Query: 426 ---TIFIDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                ++ L+   +       +     E+L  L+ +FE++   K+G N+KYD  VL  +G
Sbjct: 385 PGEAAYLPLAHRGAAQLPEAPEQLPLDEVLDRLRPWFESDRHAKLGQNLKYDAHVLANHG 444

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS-----YTRKEILKSRKSSIPIDKIS 534
           I++RG   D +L SYVL+S ++ HD+ S+A++ L      YT  E+       I  D++ 
Sbjct: 445 IALRGIAHDTLLESYVLESDKA-HDMDSLAKRHLGLATIPYT--EVCGKGAKQIGFDEVD 501

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            ++  E+A E+++V L+L   L P+L  + +L  +Y  L+ P++ V+ +ME TG+ ID  
Sbjct: 502 VARATEYAAEDADVTLRLHQHLCPQLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPF 561

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL Q S E+ + L +LE   + L+G+ FNL SPKQLG+ILF KL  P   KT TGQ  T 
Sbjct: 562 LLGQHSEELGRRLYTLEGEAHALAGQPFNLGSPKQLGEILFGKLGLPVVKKTATGQPSTD 621

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++   D P+ K +LE R LSK+KSTYAD LP  +N RT RVHT +S A+ +TGRL
Sbjct: 622 EEVLEKL-AEDYPLPKLLLEHRGLSKLKSTYADKLPRMVNPRTGRVHTSFSQATAVTGRL 680

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIPI+T  G++IR AFI+P    ++SADYSQIELRI+AH++    L + F  
Sbjct: 681 SSSEPNLQNIPIRTPEGRRIRAAFIAPRDHLIVSADYSQIELRIMAHLSDDARLLEAFAR 740

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  A E+FGV   +V+ + RR+AK INF +IYG+S   LA  L I R+ A  +I 
Sbjct: 741 GEDVHRATAGEVFGVAPAEVTSEQRRYAKVINFGLIYGMSAHGLAKNLGIERAAAQAWID 800

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ EY+++T+   R+ GYVET+FGRR++  +I + ++  R   ERAAINAP+Q
Sbjct: 801 RYFARYPGVAEYMDRTRAEAREQGYVETVFGRRLYLPDIRASQAGRRAGAERAAINAPMQ 860

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ ++AMI+    L    L +K++LQ+HDELV EVP  E+ T  + +   M     
Sbjct: 861 GTAADLIKKAMIATDAWLASCGLKSKLVLQVHDELVLEVPGAELETVREELPRLMGGVA- 919

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L+VPL V +   +NW E
Sbjct: 920 ---TLKVPLLVEVGAGDNWDE 937


>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
 gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
          Length = 932

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 375/987 (37%), Positives = 565/987 (57%), Gaps = 78/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P       T NK  A            T+  S                         
Sbjct: 301 KERPT----GQTSNK--AFVAAEPAPAAEVTAVLS------------------------- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                   ++Y  I++ K +  W+++L+     +F   TD +D   S  I +        
Sbjct: 330 -------QENYQTILDEKSLADWIERLKKSEVFAFDTETDGLDTLSSNLIGL-------- 374

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E+E  LK+G N+K+D+
Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLATLKPLLEDEKALKVGQNLKFDQ 428

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RYGI +RG   D ML SYVL+S    HD+ S+A+++L++   T +EI    K+ + 
Sbjct: 429 SMLARYGIELRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I+  +   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+
Sbjct: 489 FNQIALEEAGPYASEDADVTLQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            IDQ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G
Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T
Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDEGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+ +EKV+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 728 AAFAAGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  ++ R   ER AI
Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847

Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +A Q I   
Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQESEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ V +NW +
Sbjct: 908 MEQS----MQLAVPLKVDVGVGDNWDQ 930


>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 929

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 373/989 (37%), Positives = 562/989 (56%), Gaps = 85/989 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YKA+RP +PE L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHKMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P+  L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAVQAEKAGKSVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + ++ 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGLSFRGAKTMAPKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDA 296
           E A LS +L  ++TDV + +  + L + + +   L       EF + ++ V + T+    
Sbjct: 241 EVAYLSYQLATIKTDVELELSCDQLTVNELDVDELHRLFSRYEFKRWLSDVESGTWMQGK 300

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            + +PV                          +  S++ +Q  + ++  T          
Sbjct: 301 KSSQPV-------------------------QAVSSAVVEQVVEEDNAPT---------- 325

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 ++ D Y  I++ K +  W+++L+     +F   TD +D   +  I +       
Sbjct: 326 ------LSTDGYVTILDEKTLLDWIERLKQAEVFAFDTETDGLDTLTANLIGL------- 372

Query: 417 KDDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               SF +   E  ++ L+ H   D+  +   TK +L+  K   E+E  LKIG N+K+DK
Sbjct: 373 ----SFAIKPGEAAYLPLA-HDYLDAPEQLDRTK-VLALFKPLLEDEKLLKIGQNLKFDK 426

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            V+ RY I +RG   D ML SYVLDS    HD+ S+A+++LS+   T +EI    K+ + 
Sbjct: 427 GVMQRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLT 486

Query: 530 IDKISDSQVQEHAIENSNVIL----QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            ++I+  Q   +A E+++V L    +LW  L+P      L  V++ +D P++ V+S++E 
Sbjct: 487 FNQIALEQAGPYAAEDADVTLHLHQKLWGKLQPH---TDLCQVFQTIDMPLVPVLSRIER 543

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG+ ID  +L + S  ++  L  LE   Y+L+GE+FNLSS KQL  IL+ K K P   KT
Sbjct: 544 TGVLIDPAILAEHSKRLTIRLAELETQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKT 603

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             G   T  + L ++  G  P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  
Sbjct: 604 PKGAPSTNEEVLAELALG-YPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQ 662

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A T TGRL+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH++   
Sbjct: 663 AVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYSIVAADYSQIELRIMAHLSGDK 722

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LDIHR  A+E+FG  ++KV+ + RR AK INF +IYG+S F L+ QL IPR
Sbjct: 723 GLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPR 782

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           SE+  Y+  YF R+PG+ +Y+E+T+    ++GYV T+ GRR++  +I+S  +  R   ER
Sbjct: 783 SESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAER 842

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QG+AADI ++AMI++   L       KM++Q+HDELVFE+ +  I  +   I 
Sbjct: 843 AAINAPMQGTAADIIKKAMIAIDDWLRKDTPKVKMIMQVHDELVFEIHDSVIEESISKIK 902

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME  C+    L VPL+V+I    NW E
Sbjct: 903 VLME-GCM---QLNVPLQVDIGTGMNWDE 927


>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
 gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
          Length = 929

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 371/989 (37%), Positives = 556/989 (56%), Gaps = 85/989 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G    A+ G  NML  LL         SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYHP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YKA+RP +PE L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHSMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P+  L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAVQAEKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+++  N  +I +      K     + ++ 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAELSFRGAKTMAPKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDA 296
           E A LS +L  ++TDV + +  E L + + +   L       EF + ++ + + T+    
Sbjct: 241 EVAYLSYQLATIKTDVELELSCEQLTVNELDVDELHRLFSRYEFKRWLSDIESGTWMQGK 300

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            + +PV     T  N  +    E D   T+                              
Sbjct: 301 KSSQPV----QTVSNAVVEQAVEEDNAPTLSA---------------------------- 328

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                    D Y  I++ K +  W+++L+     +F   TD +D   +  I +       
Sbjct: 329 ---------DGYVTILDEKTLLDWIERLKQAEVFAFDTETDGLDTLTANLIGL------- 372

Query: 417 KDDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               SF +   E  ++ L+ H   D+  +     ++L+  K   E+E  LKIG N+K+DK
Sbjct: 373 ----SFAIKPGEAAYLPLA-HDYLDAP-EQLDRAQVLALFKPLLEDEKLLKIGQNLKFDK 426

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            V+ RY I +RG   D ML SYVLDS    HD+ S+A+++L +   T +EI    K+ + 
Sbjct: 427 GVMQRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTITFEEIAGKGKNQLT 486

Query: 530 IDKISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            ++I+  Q   +A E+++V L L    W  L+P      L  V++ +D P++ V+S++E 
Sbjct: 487 FNQIALEQAGPYAAEDADVTLHLHQTLWGKLQPH---ADLCQVFQAIDMPLVPVLSRIER 543

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG+ ID  +L + S E++  L  LE   Y+L+GE+FNL+S KQL  IL+ K K P   KT
Sbjct: 544 TGVLIDPAILAEHSKELTTRLAGLETQAYELAGEEFNLASTKQLQGILYEKQKLPILKKT 603

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             G   T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  
Sbjct: 604 PKGAPSTNEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQ 662

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A T TGRL+S +PNLQNIP++ D G++IR+AFI+     +++ADYSQIELRI+AH++   
Sbjct: 663 AVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIASKGYSIVAADYSQIELRIMAHLSGDK 722

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LDIHR  A+E+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL IPR
Sbjct: 723 GLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPR 782

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           SE+  Y+  YF R+PG+ +Y+E+T+    ++GYV T+ GRR++  +I+S  +  R   ER
Sbjct: 783 SESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAER 842

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QG+AADI ++AMIS+   L+      KM++Q+HDELVFE+ +  I  +   I 
Sbjct: 843 AAINAPMQGTAADIIKKAMISIDDWLQKDTPLVKMIMQVHDELVFEIHDSVIEESISKIK 902

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME  C+    L VPL+V+I    NW +
Sbjct: 903 ILME-GCM---QLNVPLQVDIGTGMNWDQ 927


>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
 gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
          Length = 933

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 375/984 (38%), Positives = 552/984 (56%), Gaps = 71/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P +   G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V  K+GIPP  ++   
Sbjct: 121 LALEAEKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPALIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N   I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALYANLDNIATLNFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +    L +   +   L    K  EF + +           A
Sbjct: 241 EVAYLSYKLATIKTDVELDLSCAELEVSPLDVDALQQLFKQYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E     I     KG  ++        +  S+ + +   T K+ +E T           
Sbjct: 290 DVEA---GIWLEGKKGSGVK-------AVSASKPAGVVADTPKVAAEAT----------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ + Y  I++ K    W++KL+     +F   TD +D   +  I ++ + +   
Sbjct: 329 -----LSQEGYVTILDEKTFADWLKKLKNAEVFAFDTETDGLDTLTANLIGLSFA-VAPG 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +           +L  LK   E+E  LK+G N+K+D  +L 
Sbjct: 383 EAAYLPVAHDYLDAPAQLDR---------AYVLETLKPLLEDEKALKVGQNLKFDMGLLA 433

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I++RG   D ML SYVLDS    HD+ S++ ++L +   T +EI    K  +  ++I
Sbjct: 434 RYDITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFEEIAGKGKKQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L    +LL V+  ++ P++ V+S +E TG+ IDQ
Sbjct: 494 ALEQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNEIEMPLVPVLSHIERTGVLIDQ 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++K L  LE   ++L+ E FNL+S KQL  IL+ K K P   KT  G   T
Sbjct: 554 SILATHSIELTKRLAELEIQAHELAEEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+K+TY D LP  IN  + RVHT Y  A T TGR
Sbjct: 614 NEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPFSGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L + F 
Sbjct: 673 LSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFA 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FGV ++KV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 733 EGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +++S     R   ERAAINAP+
Sbjct: 793 DLYFERYPGVLEYMERTRQQAAEQGYVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSL--EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           QG+AADI +RAMI V   L  +D  L  +M++Q+HDELVFE+ E  I  +SQ I   ME 
Sbjct: 853 QGTAADIIKRAMIEVDAWLQGQDEPL-VRMIMQVHDELVFEIHESVIEASSQRIRELMEN 911

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           +    + L VPLKV++ V  NW E
Sbjct: 912 S----MTLAVPLKVDVGVGANWDE 931


>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
 gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
          Length = 929

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 369/983 (37%), Positives = 550/983 (55%), Gaps = 73/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYKP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEEYKSHRPPMPDELRAQIEPLHKMVKAMGLPLLAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V++K+GIPP  M+   
Sbjct: 121 LALEAEKAGQAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKDIYANLDKVATLTFRGAKTMAAKLEKNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L +++     L++  K  EF + I  +         
Sbjct: 241 EMALLSYQLATIKTDVELELTSDQLTVKEPAVEELLALFKHYEFKRWITDLEEGKWLQGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P +  +   +++  A+E           S  SS                        
Sbjct: 301 KGNPSMKKVAAVQDEPAAVEA---------ASVLSS------------------------ 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                   D Y  I++ +    W+ KL+     +F + TD++D   +  I ++ +T    
Sbjct: 328 --------DGYVTILDEETFASWLNKLQNSELFAFDLETDSLDTLSANIIGLSFATAPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      ++         ++L+ LK   EN   LK+G N+K+D+ VL 
Sbjct: 380 A-AYLPVAHDYLDAPAQLDRN---------DVLARLKPLLENPQALKVGQNLKFDRGVLK 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            Y I ++G   D ML SY L+S    HD+ ++A +WL++   T +EI    K  +  ++I
Sbjct: 430 SYDIELQGIRFDTMLESYALNSVIGRHDMDTLALRWLNHKTVTFEEIAGKGKKQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P L  E+   +V+E+L+ P++ V+S++E  G+ IDQ
Sbjct: 490 ALEQAGHYAAEDADVTLQLHLKMWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQ 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+   L  LE+  ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 550 GILATHSQELGSRLAELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  + RVHT Y    T TGR
Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+PP  ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPPGYRIVAADYSQIELRIMAHLSQDKGLLSAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIHR  AAE+FGV+++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 729 SEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSSFGLSRQLNIGAGEAKKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T+    + GYV T+ GRR++  +IN+  +  R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLQYMESTRELAAEKGYVSTLDGRRLYLPDINASNAIRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   LE       KM++Q+HDELVFEV  + +  AS  I   ME +
Sbjct: 849 QGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVHDELVFEVRADAVEAASAQIRALMEGS 908

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPL+V+I V +NW +
Sbjct: 909 ----MALDVPLRVDIGVGDNWDQ 927


>gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96]
 gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96]
          Length = 930

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 367/976 (37%), Positives = 558/976 (57%), Gaps = 77/976 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSSF++RA++A P L+   +G P NAI G  NML KL+ +   + I     V+FD
Sbjct: 22  LILVDGSSFLFRAYHAIPPLTNA-NGEPTNAIYGVSNMLRKLIADYHSDYIT----VVFD 76

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFRNE+Y  YKA+RP +P+ L  Q+  +    +A G+P I   G EADD++     
Sbjct: 77  APGKTFRNELYDQYKAHRPPMPDDLRVQIAPLHNLIRAMGLPLIIESGVEADDVLGVLAQ 136

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE++G+ V I + DKD+ QLV+    L +T+   ++DI+ VI K+G+ PE+++   AL 
Sbjct: 137 HAEQQGYDVIISTGDKDMAQLVTEHIILENTMSNTRMDIQGVIDKFGVRPEQIIDYLALI 196

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DNIPG+P +G KTAA  L++Y  LEN++ +A +I   K  EN+    +   LS++L
Sbjct: 197 GDTVDNIPGVPKVGPKTAAKWLEQYSTLENLIAHADKIT-GKIGENLRASLDQLPLSKQL 255

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ +   +E L  +  +   L   L  L F+  +  +                  
Sbjct: 256 TTIKCDLDLPYNMEDLKQQPMDKAELRILLAELGFSSWLKSL------------------ 297

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                           D + + S  SS +   S I + QT  K            P   D
Sbjct: 298 ----------------DASTELSTGSSSTPALSPIEAAQTEDK------------PAKID 329

Query: 367 S-YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           S Y  ++  +    W+ +LE     +F   T ++D   ++ + ++ +    K        
Sbjct: 330 SSYETVLTEQHFDDWLARLEKAELFAFDTETTSLDYSKAQIVGVSFAVTPGK-------- 381

Query: 426 TIFIDLSVHTSQDSTG-KNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
             ++ L+     D  G  + L + EIL  L+   EN    K+G N+KYD  VL  +GI++
Sbjct: 382 AAYVPLA----HDYPGVPDQLDRSEILEKLRPLLENPRKAKLGQNLKYDTHVLANHGIAL 437

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           RG   D ML SYVL+S  + H++  +A+++L       +++       I   ++S  Q  
Sbjct: 438 RGIAHDTMLESYVLNSTATKHNMDDLAKEYLGVETIHYEDVAGKGAKQIGFQEVSIDQAA 497

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ LQL  +L  KL    +LL +Y  ++ P+I V++++E  G+ ID  +L Q 
Sbjct: 498 PYAAEDADITLQLHQVLNAKLAQHPRLLELYSDMEVPLISVLARIENNGVLIDAAMLAQQ 557

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+S  ++SLE++ +DL+G+ FNL SPKQ+ DIL+ + K P   KT  GQ  T    L+
Sbjct: 558 SLELSSQIISLEQHAHDLAGQTFNLGSPKQIQDILYDQQKLPVLKKTPKGQPSTEESVLQ 617

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D P+ K ILE+R LSK+KSTY D LP  I+ +T R+HT Y  A   TGRL+S +P
Sbjct: 618 ELAL-DYPLPKLILEYRSLSKLKSTYTDKLPQQIDGQTGRIHTSYHQAIAATGRLSSSDP 676

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G+KIR+AFI+P  KK+++ADYSQIELRI+AH++    L + F    D+H
Sbjct: 677 NLQNIPIRSEEGRKIRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLKAFSEEQDVH 736

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FGV  E+V+  +RR AK INF +IYG+S F LA QL + RS+A  YI  YF R
Sbjct: 737 RATAAEVFGVAPEQVTTDLRRSAKAINFGLIYGMSSFGLAQQLGLSRSQAQSYIDLYFAR 796

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+++ +   R+ GY+ET+FGRR++  EINS  ++ R   ER AINAP+QG+AAD
Sbjct: 797 YPGVKNYMDRIREQAREQGYIETLFGRRLYLPEINSRNAARRQYAERTAINAPMQGTAAD 856

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAMI+  + L   +   KM++Q+HDELVFE+ EE +   +  I   M  A     +L
Sbjct: 857 IIKRAMIAADQWLYKEQPDAKMIMQVHDELVFEIAEEHVDDCAAKIRSIMCAAA----DL 912

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V+I + NNW E
Sbjct: 913 DVPLIVDIGIGNNWDE 928


>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
 gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
          Length = 933

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 362/976 (37%), Positives = 544/976 (55%), Gaps = 52/976 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + D
Sbjct: 4   LVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFVVD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T   
Sbjct: 58  APGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLAL 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQAL 185
            A  +G +VTI + DKD  QLV P   L +T+   ++D  E VI K+G+ P+++V L AL
Sbjct: 118 QAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDEAVIAKFGVRPDQIVDLLAL 177

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   EN+        L+R+
Sbjct: 178 MGDTVDNVPGVDKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-ENLRAALPRLPLNRE 236

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV ++TDV +      L L + N   L        FT+ +  +           EP+ L 
Sbjct: 237 LVTIKTDVTLASGPRALDLREPNAETLAVLYARYGFTQALRELGGAATQAGLLTEPMALG 296

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 +     TE  R    + + F S             P    +E    LS      
Sbjct: 297 AAAASAR-----TEPGR---ARGTGFVS------------GPVSAPVEVDPALSA----P 332

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++   +    ++   
Sbjct: 333 GQYDTILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAA--EPGQAAY--- 387

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                L    +          ++ L+ L     +    K+G + KYD  V+ R+GI++ G
Sbjct: 388 -----LPFGHNFPGAPAQLERRQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGIALAG 442

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEH 541
           + +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS      +
Sbjct: 443 YSDDTLLQSFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATRY 502

Query: 542 AIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ L+L  +L PKL  E  L  VY  ++ P+++V++++E  G+ +D   L++ SA
Sbjct: 503 AAEDADITLRLHHVLGPKLAAEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQSA 562

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           ++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + LE I
Sbjct: 563 DLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAI 622

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +PNL
Sbjct: 623 -ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPNL 681

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+HR 
Sbjct: 682 QNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRA 741

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+P
Sbjct: 742 TAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRYP 801

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI 
Sbjct: 802 GVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADII 861

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +RAM+SV   + DH     M+LQ+HDELVFE   + + T    +   M  A      LRV
Sbjct: 862 KRAMVSVDAWIADHAEHALMILQVHDELVFEADADFVDTLLGEVTARMSAAA----ELRV 917

Query: 961 PLKVNIKVSNNWQEEN 976
           PL V+  V +NW E +
Sbjct: 918 PLVVDSGVGDNWDEAH 933


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 365/982 (37%), Positives = 567/982 (57%), Gaps = 68/982 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIIQYKP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIEPLHKMVEAMGLPILVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEKEG +V I + DKD+ QLV+P   L +T+    +  E V +K+G+PPE ++   
Sbjct: 121 LALQAEKEGRSVLISTGDKDMAQLVTPYITLINTMTNTILGPEGVSEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+L++I      I        K     + ++ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGSLDDIYARLDEIATLSFRGAKTLSGKMAQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV +      L +   +   L++     EF + ++ V         
Sbjct: 241 EVAYLSYQLATIKTDVELDKTCLELAVTAPDSDELLALFSRYEFKRWLSDVQNGS----- 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 L+ N+ ++             T+  ++ +++S   + +N               
Sbjct: 296 -----WLEGNSQKSAA-----------TVSAAKSATISSAPAAVN--------------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ ++Y  I++ K + +W+ KL+   + SF   TD +D      + ++ +    +
Sbjct: 325 -----ISPENYQTILDRKSLDEWIVKLKQAPAFSFDTETDGLDTLTVNLVGMSFAIAVGE 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            +    VE  ++ L  H   D+  +  L  E+L+ LK   E+ +  KIG N+K+D+ VL 
Sbjct: 380 SE----VEAAYLPLG-HDYLDAPEQLDL-HEVLAALKPLLEDANLPKIGQNLKFDRGVLA 433

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY +++ G   D ML SYVL+S    HD+ S+A + L Y   T +EI    K  +  ++I
Sbjct: 434 RYDVALNGIVFDTMLESYVLNSVSGRHDMDSLADRHLGYKTTTFEEIAGKGKKQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +  ++A E+++V L+L  ++ P++  V  L  V++ ++ P++ V+S++E TG+ ID 
Sbjct: 494 PLEEAAKYAAEDADVTLRLHQVMYPQIDSVPTLKSVFQNIEMPLVPVLSRIERTGVLIDA 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L + S EI+  L  LE+  Y+L+GE+FNL+SPKQL  ILF KL  P   KT  G   T
Sbjct: 554 QTLAEHSTEITARLGELEKAAYELAGEEFNLASPKQLQVILFEKLNLPVLKKTPNGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE++   ++ + + ILE R L+K+KSTY D LP  +N  T+RVHT Y  A T TGR
Sbjct: 614 NEEVLEEL-ADNHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTKRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH+++   L + F 
Sbjct: 673 LSSRDPNLQNIPVRNDEGRRIRQAFIAPEGYCIMAADYSQIELRIMAHLSQDKGLLEAFA 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAE+FGV +E+V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 733 QGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFGLIYGMSAFGLSRQLSIPRGEAQRYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    ++G+VET+ GRR++  +I S  +  R  +ER AINAP+
Sbjct: 793 DLYFERYPGVLAYMERTRQQAAEHGFVETLEGRRLYLPDIKSRNAMRRKASEREAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI+V   +   +   +M++Q+HDELVFEV E E+ TA Q I   MEK+ 
Sbjct: 853 QGTAADIIKLAMIAVDNWIVSEQPNVRMIMQVHDELVFEVHESELATAEQKISELMEKS- 911

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L VPLKV++ +  NW +
Sbjct: 912 ---MQLDVPLKVDVGIGINWDQ 930


>gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 930

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 372/982 (37%), Positives = 556/982 (56%), Gaps = 70/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I        K     + E  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLSFRGAKTMAGKLEENK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +  E L ++  +   L+S  K  EF +    V       A 
Sbjct: 241 EVAYLSYKLATIKTDVELELGCEQLEVQQPSADDLLSLFKKYEFKRWTTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T           ID D            DQ     +E+    L  E    
Sbjct: 301 GAKPAAKPKETIV---------IDAD------------DQ-----AEEEAAALSFEH--- 331

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+    +  W++KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 332 ----------YETILEETQLVAWIEKLKKAPVFAFDTETDSLDNITANMVGLSFAT-EPG 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++          +L  LK   E+++ LK+G N+KYD+ +L 
Sbjct: 381 IAAYVPVAHDYLDAPEQLSRE---------RVLELLKPILEDDNALKVGQNLKYDRGILQ 431

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+LDS    HD+ S++ +WL +   T +EI    K+ +  ++I
Sbjct: 432 NYGIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L+V++ ++ P++ V+S++E  G++ID 
Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDP 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+++ L  LE+  ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 552 TVLHNHSGELAQRLTELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A   TGR
Sbjct: 612 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 731 EGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDIKSSNAARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   LE  K   KM++Q+HDELVFEV ++++ + S+ I   ME + 
Sbjct: 851 QGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLDSVSKTIHELMENS- 909

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L VPL V +    NW +
Sbjct: 910 ---MKLDVPLLVEVGSGENWDQ 928


>gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
          Length = 928

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 364/982 (37%), Positives = 555/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGCPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        KK    + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKKMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
 gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
          Length = 934

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 362/983 (36%), Positives = 560/983 (56%), Gaps = 68/983 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL         SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNA-SGEPTGAMYGVLNMLRSLLLQYHP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G++V I + DKD+ QLV+P   L +T+    +  E V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGYSVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVREKFGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYSNLDKIASLTFRGAKTLSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +    LI+   +  +L +     EF + +  +      +  
Sbjct: 241 DVAYLSYQLATIKTDVELEVSCGELIVSTPDIDQLHTLFARYEFKRWLVDLEGGKWLEGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P     +  +   I + T         T++ ++L                       
Sbjct: 301 KARPTGTGKSDNKASDIVVAT--------PTAEVTAL----------------------- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ +    W+++L+     +F   TD +D   +  I ++ + +   
Sbjct: 330 -----LSQENYQTILDEETFLIWIERLKQAEVFAFDTETDGLDTLSANLIGLSFA-VAPG 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +           +L+ LK   E+E  LK+G N+K+DK +L 
Sbjct: 384 EAAYLPVAHDYLDAPAQLDRSW---------VLTTLKPLLEDEQALKVGQNLKFDKSLLA 434

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVL+S    HD+ S+++++L++   T +EI    K+ +  ++I
Sbjct: 435 RYGIELRGIAFDTMLESYVLNSVAGRHDMDSLSERYLNHKTITFEEIAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + PKL   E LL V+++++ P++ ++S++E TG+ IDQ
Sbjct: 495 ALEQASPYAAEDADVTLQLHLAMWPKLQESEDLLRVFQQIEMPLLPILSRIERTGVLIDQ 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 555 SILATHSQELTIRLTELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K +LE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 615 NEEVLAELAL-DYPLPKVLLEYRGLAKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L   F 
Sbjct: 674 LSSRDPNLQNIPVRNEEGRRIRQAFIAPAGYCILAADYSQIELRIMAHLSQDKGLLAAFA 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 734 EGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 794 DLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A+Q I   ME++
Sbjct: 854 QGTAADIIKRAMIAVDAWLQQQAEPLVRVIMQVHDELVFEVHESVVESATQTICDLMEQS 913

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPLKV + V  NW +
Sbjct: 914 ----MQLDVPLKVEVGVGKNWDQ 932


>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
 gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
          Length = 941

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 367/984 (37%), Positives = 559/984 (56%), Gaps = 68/984 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  +GLP  AI G  NML KL    R +  A + A +FD
Sbjct: 8   LLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAEYSACVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E+YP YK +RP +PE L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 63  AKGKTFRDEMYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVEGVEADDVIGTLAR 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G    + + DKDL QLV+    L +T+  E +D   V  K+G+PPE++V   +L 
Sbjct: 123 QAAEQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPAGVNAKFGVPPERIVDYLSLI 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAETARLSR 244
           GD++DN+PG+P +G KTA   L E+G L+NI+  A+ IK    +   N L++   AR   
Sbjct: 183 GDAVDNVPGVPKVGPKTAVKWLTEHGTLDNIMAGAAGIKGVVGENLRNTLDWLPKAR--- 239

Query: 245 KLVMLRTDVPITIPLEHL-----ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           +LV ++TD  ++  +        I ED    +LI+F     F   + R AT      A  
Sbjct: 240 ELVTVKTDCDLSAAVADFHALREIGEDKE--KLIAFFTRYGFKTWL-REATGESLPDARA 296

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +            G+                F + +  +S + +E  P        + ++
Sbjct: 297 QARARAAAAPAQGGL----------------FDAPAATSSALAAETPPA-------EDMA 333

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I    Y  +      + W+Q++E+    +    T ++D   ++ + I++S       
Sbjct: 334 PSEIR---YELVTTEAAFEAWMQRIESAPLTAIDTETTSLDPMLAQLVGISLSVEPG--- 387

Query: 420 TSFKVETIFIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475
                E  +I +  H   D  G      L+++ +L+ ++ + E++   K+G NIKYD  V
Sbjct: 388 -----EACYIPVG-HRGPDVAGMENNGQLSRDTVLARMRAWLEDDSKPKLGQNIKYDIHV 441

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPID 531
              +G+++ G  +D ML SYVL S R+ H + S+A++ L   + T +E+     S I  D
Sbjct: 442 FANHGVTLCGVAQDTMLESYVLASHRN-HGMDSLAERLLNLKTITYEEVCGKGASQIGFD 500

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I  ++  E+A E+++V L+L   + P++     L  VYE ++ P+  V+ ++E  G+ I
Sbjct: 501 QIDLARATEYAAEDADVTLRLHRKMFPQVSAAAGLRRVYEEIEIPVSVVLQKIERNGVLI 560

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D + L   SAE+ + +LSLE+  YD +G+ FNL SPKQ+G+ILF ++K P   KT +G  
Sbjct: 561 DAERLAAQSAELGQRMLSLEQAAYDAAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGAP 620

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N  T RVHT Y  A+ +T
Sbjct: 621 STDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVT 679

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS EPNLQNIP++T+ G++IR AFI+ P   ++SADYSQIELRI+AHI+    L + 
Sbjct: 680 GRLASTEPNLQNIPVRTEEGRRIREAFIASPGSVIVSADYSQIELRIMAHISGDENLLRA 739

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N  DIHR  A+EIFGV+ E VS + RR+AK INF +IYG+S F LA+ L I R  A  
Sbjct: 740 FANGEDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKH 799

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+ +Y+E T+   R+ GYVET+FGRR+   +IN      R   ERAAINA
Sbjct: 800 YIDRYFMRYPGVAQYMEDTRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINA 859

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AAD+ + +MI+V   LE  KL T+ ++Q+HDELV EVP++E+     ++   + +
Sbjct: 860 PMQGTAADLIKLSMIAVQGWLERDKLQTRQIMQVHDELVLEVPQDEL----DVVKTRLPE 915

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                  LRVPL   +    NW+E
Sbjct: 916 LMCSVAQLRVPLVAEVGSGANWEE 939


>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
 gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
           exonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 939

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 371/990 (37%), Positives = 564/990 (56%), Gaps = 82/990 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  +GLP  AI G  NML KL    R +  A + A +FD
Sbjct: 8   LLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAEYSACVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YP YK +RP +PE L  Q+  +  A +A G P + + G EADD+I T + 
Sbjct: 63  AKGKTFRDDLYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVDGVEADDVIGTLSR 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G    + + DKDL QLV+    L +T+  E +D   V+ K+G+PPE+++   +L 
Sbjct: 123 QAMEQGVRTVVSTGDKDLAQLVNEHVTLVNTMSGEVLDPPGVLAKFGVPPERIIDYLSLI 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+P +G KTA   L E+G+L+ ++  AS IK     EN+    E   ++R+L
Sbjct: 183 GDAVDNVPGVPKVGPKTAVKWLAEHGSLDGVMAAASGIKGVV-GENLRNTLEWLPMARRL 241

Query: 247 VMLRTDVPITIPLE--HLILEDC-NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           V ++TD  ++  +   H + E   +  +L++F +   F   + R AT      A  +   
Sbjct: 242 VTVKTDCDLSKSVADFHALRETGEDKEQLVAFFQRYGFKTWL-REATGESLPDARAQARA 300

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
               +   +G                    L D  +    +  P              P 
Sbjct: 301 RAATSAPAQG-------------------GLFDAPAPSAGDGAP--------------PA 327

Query: 364 NNDSYTKI----VNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           ++ + T+I    V T   ++ W++++E+    +    T ++D   ++ + I++S      
Sbjct: 328 DDAAPTEIRYETVTTPGMLEDWLRRIESAPLVAIDTETTSLDPMQAQLVGISLS------ 381

Query: 419 DTSFKVETIFIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
             +   E  +I ++ H   D  G      L++E +L  ++ + E+    K+G N+KYD  
Sbjct: 382 --AAPGEACYIPVA-HRGPDVAGLPEHGQLSREFVLERMRAWLEDASRPKLGQNLKYDIH 438

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   +GI +RG   D ML SYVL S R +H + S+A++ LS    T +E+     S I  
Sbjct: 439 VFANHGIKLRGVAHDTMLQSYVLASHR-NHGMDSLAERLLSLKTITYEEVCGKGASQIGF 497

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           D+I  ++  E+A E+++V L+L   + P++     L  VYE ++ P+  V+ ++E  G+ 
Sbjct: 498 DQIDLARATEYAAEDADVTLRLHRRMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVL 557

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID + L   SAE+ + +L+LE++ Y+ +G+ FNL SPKQ+G+ILF ++K P   KT +G 
Sbjct: 558 IDAERLAAQSAELGQRMLALEQSAYEAAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGA 617

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L+++   D P+ K +L++R LSK+KSTY D LP  +N RT RVHT Y  A+ +
Sbjct: 618 PSTDEEVLQKL-AEDYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPRTGRVHTSYGQATAV 676

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS EPNLQNIP++TD G++IR AFI+ P   ++SADYSQIELRI+AHI+    L +
Sbjct: 677 TGRLASTEPNLQNIPVRTDEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLR 736

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N  DIHR  AAEIFGV  + VS + RR+AK INF +IYG+S F LA+ L I R  A 
Sbjct: 737 AFANGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIERDAAR 796

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI RYF R+PG+  Y+E+T+   R+ GYVET+FGRR+   +IN      R   ERAAIN
Sbjct: 797 HYIDRYFMRYPGVAHYMEETRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAIN 856

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AAD+ + +MI+V   LE   L T+ ++Q+HDELV EVPE E+          + 
Sbjct: 857 APMQGTAADLIKLSMIAVQDWLERDGLQTRQIMQVHDELVLEVPEHEL---------ELV 907

Query: 950 KACLPKI-----NLRVPLKVNIKVSNNWQE 974
           KA LP++      LRVPL   +    NW+E
Sbjct: 908 KARLPELMCTVAELRVPLVAEVGSGANWEE 937


>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
 gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI39]
          Length = 928

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 556/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            ++P                            Q +S++D+  ++ +              
Sbjct: 301 GVKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
 gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
          Length = 934

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 367/985 (37%), Positives = 559/985 (56%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T    GI     +  D   KTS   S++  T+  ++   P+         
Sbjct: 292 ------LDGGT----GI-----VTADEQTKTS---SVTVSTAATHAAAIPES-------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ + + + 
Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +  +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ I
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMI 552

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G  
Sbjct: 553 DDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 671

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   
Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +
Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINA
Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 851

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + +E +     K+L+Q+HDELVFEV E  ++     +   ME
Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL       +NW++
Sbjct: 912 SAA----ELAVPLVAEAGHGDNWEQ 932


>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
 gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
 gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
          Length = 934

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 367/985 (37%), Positives = 559/985 (56%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLTFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T    GI     +  D   KTS   S++  T+  ++   P+         
Sbjct: 292 ------LDGGT----GI-----VTADEQTKTS---SVTVSTAATHAAAIPES-------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ + + + 
Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +  +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ I
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMI 552

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G  
Sbjct: 553 DDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 671

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   
Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +
Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINA
Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 851

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + +E +     K+L+Q+HDELVFEV E  ++     +   ME
Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL       +NW++
Sbjct: 912 SAA----ELAVPLVAEAGHGDNWEQ 932


>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
 gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
          Length = 916

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 381/980 (38%), Positives = 560/980 (57%), Gaps = 78/980 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++N L LVDGSS+++RAF++ P L+    G    AI G  NML  L+    K+   SH  
Sbjct: 5   QDNPLILVDGSSYLFRAFHSPPHLTNSR-GESTGAIYGVVNMLKSLV----KQFDPSHMV 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD    TFRN++Y +YKANRP +P+ L  Q+  +    +A G+P I I+G EADD+I 
Sbjct: 60  VIFDAKGKTFRNDMYAEYKANRPPMPDELRGQIAPLHDIIRAMGLPLISIEGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T+  IA ++   V I + DKD+ QLV+    L +T+ +  +D   V +K+G+PPE ++  
Sbjct: 120 TFARIATEQKRNVLISTGDKDMAQLVNEHVTLINTMTDTVLDPAGVTEKFGVPPELIIDY 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD +DNIPG+ G G KTA   LQ+YG+L  ++ NA+ IK  K  E +        L
Sbjct: 180 LALMGDKVDNIPGVDGCGPKTAVKWLQQYGSLSQVIENAAAIK-GKIGEKLQAAVPHLPL 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S +L  ++ DV ++  L+ L ++  N   LI      EF + +   A   D  A   +P+
Sbjct: 239 SFELATIKLDVEVSDDLDQLTIQAPNKDELIKLYGHCEFRRWL---AELLDGAAPAPQPL 295

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                              R+T  +TS             SE T               P
Sbjct: 296 T-----------------QRETNAQTS-------------SELTA--------------P 311

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           + +  Y  I+  + + +W+ +L++    +F   T ++D   +  + +           SF
Sbjct: 312 LIDVEYETILTEEQLDKWLAQLQSAPLFAFDTETTSLDYMQADLVGM-----------SF 360

Query: 423 KVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            VE       +    D  G    L+KE + + L     +E   K+G N+KYDK VL R G
Sbjct: 361 AVEA-GKAAYLPIGHDYLGAPEQLSKEMVFAKLGPLLADEQRPKVGQNLKYDKSVLARAG 419

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           + + G + D ML SYVL+S  + HD+ S+A K+L +   + +EI    K+ +  ++I   
Sbjct: 420 LELNGIKFDTMLESYVLNSVGTRHDMDSLALKYLGHKNISFEEIAGKGKNQLTFNQIELD 479

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E++++ L+L  +L PKL   EKL  V+E ++ P++ V+S +E TG++ID D+L
Sbjct: 480 KAAPYAAEDADITLRLHQMLWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDML 539

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            + S EI K L  LE+  ++L+GE FNLSSPKQL  ILF K + P   KT  G   +TA+
Sbjct: 540 AKQSFEIGKRLDELEKEAHELAGEAFNLSSPKQLQVILFEKHELPVIKKTPKGA-PSTAE 598

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           ++ Q    D P+ K I+E R LSK+KSTY D LP  +N  TQRVHT Y  A T TGRL+S
Sbjct: 599 EVLQELAHDYPLPKLIIEHRGLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSS 658

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G+KIR+AF++    K+ +ADYSQIELRI+AH+++   L   F   L
Sbjct: 659 TDPNLQNIPIRTEEGRKIRQAFVAAKGYKIAAADYSQIELRIMAHLSQDKGLLNAFAQGL 718

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H   AAE+FGV++ +V+  MRR AK +NF +IYG+S F LA QL +PR EA  YI +Y
Sbjct: 719 DVHSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKY 778

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPG+ EY+E T+    + GYVET+FGRR++  EIN+   + R   ERAAINAP+QG+
Sbjct: 779 FERFPGVLEYMESTREKAAELGYVETLFGRRLYLPEINARNGASRKAAERAAINAPMQGT 838

Query: 896 AADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           AADI ++AMI+V+  ++     T ++L+Q+HDELVFE+ EE +    Q I   M +A   
Sbjct: 839 AADIIKKAMITVNAWVKAQPANTVRLLMQVHDELVFEIKEECVGDYMQHICLLMSQAA-- 896

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L VPL V     +NWQ+
Sbjct: 897 --ALDVPLIVESDSGDNWQQ 914


>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
 gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
 gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli UMN026]
 gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
          Length = 928

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 364/982 (37%), Positives = 553/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   ENE  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLENEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
 gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
          Length = 928

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 364/982 (37%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKTWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   ENE  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLENEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 933

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 359/981 (36%), Positives = 542/981 (55%), Gaps = 62/981 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQ 183
              A  +G +VTI + DKD  QLV P   L +T+   ++D  E VI K+G+ P+++V L 
Sbjct: 116 ALQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDEAVIAKFGVRPDQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   +N+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV ++TDV +      L L + N   L        FT+ +  +  T        EPV 
Sbjct: 235 RELVTIKTDVTLASGPRALDLREPNTETLAVLYARYGFTQALREMGGTSAQAGLLSEPVA 294

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L       +    E    R T   +   ++  D    +++                    
Sbjct: 295 LGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPALSAP------------------- 332

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----- 418
               Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++    K      
Sbjct: 333 --GEYETILTQEQLDSWIVQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPF 390

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +F    + +D +               + L+ L     +    K+G + KYD  V+ R
Sbjct: 391 GHNFPGAPVQLDRT---------------QALAQLVPLLTDPAVRKLGQHGKYDLHVMRR 435

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           +G+ + G+  D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS
Sbjct: 436 HGVELAGYAHDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQIS 495

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                 +A E++++ L+L  +L PKL  E  L  VY  ++ P++DV++++E  G+ +D  
Sbjct: 496 LEDATRYAAEDADITLRLHHVLGPKLAAEPGLERVYREIEMPLVDVLARIEANGVCVDAA 555

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L++ SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T 
Sbjct: 556 ELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTN 615

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE I    + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL
Sbjct: 616 EEALEAI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRL 674

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+
Sbjct: 675 SSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFES 734

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI 
Sbjct: 735 GADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIA 794

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+Q
Sbjct: 795 LYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQ 854

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAM+SV   +  H    KM+LQ+HDELVFE   + + T    +   M  A  
Sbjct: 855 GTAADIIKRAMVSVDGWIAGHAQRAKMILQVHDELVFEADTDFVDTLLSEVTTRMASAA- 913

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               LRVPL V+  + +NW E
Sbjct: 914 ---ELRVPLVVDSGIGDNWDE 931


>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
 gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
          Length = 934

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 367/985 (37%), Positives = 559/985 (56%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMI----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T    GI     +  D   KTS   S++  T+  ++   P+         
Sbjct: 292 ------LDGGT----GI-----VTADEQTKTS---SVTVSTAATHAAAIPES-------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ + + + 
Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +  +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ I
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMI 552

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G  
Sbjct: 553 DDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 671

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   
Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +
Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINA
Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 851

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + +E +     K+L+Q+HDELVFEV E  ++     +   ME
Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL       +NW++
Sbjct: 912 SAA----ELAVPLVAEAGHGDNWEQ 932


>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
 gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
          Length = 928

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 556/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL +ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQNILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B]
          Length = 928

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 364/982 (37%), Positives = 553/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P  L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E++NV LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDANVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
 gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
          Length = 947

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 365/984 (37%), Positives = 566/984 (57%), Gaps = 59/984 (5%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+DG + +YRA +A    P+ + K  G+  +A+ GF   L ++++N +     +HFAV
Sbjct: 5   LFLLDGMALVYRAHFALVARPIFTSK--GVNTSALYGFTQTLLEIIKNQQ----PTHFAV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A T R+  +P+YKA R ++PE L   LP VR   +AF IP I   G+EADD+I T
Sbjct: 59  AFDTAAPTARHVEFPEYKAQREEMPEDLSKALPHVRRMVEAFNIPLIICDGYEADDLIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
               AEKEGF   +++ DKD  QLV   T LY   +     E + +  +++KWG+  PE+
Sbjct: 119 LVRKAEKEGFVSYMVTPDKDFGQLVDQNTFLYKPSRMGEGIEILGLPEILQKWGVQRPEQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +  L GD  DNIPG+PGIG KTAA L+ +YG++EN+L + + +K  K +EN+  + E
Sbjct: 179 VIDVLGLWGDVSDNIPGVPGIGEKTAAKLIAQYGSVENLLAHTAELK-GKLKENLEAHRE 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAA 297
            A LS++L  +  + P ++ LE L ++ CN   L +     EF  +  R+    Y     
Sbjct: 238 QALLSKRLATINCEAPCSVTLEGLEVKKCNEEALKNLFVEFEFNSIGRRLFGDDYKAGRG 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E       TT     A +    RD  + T +F+  S+      +E+ P    L+ +  
Sbjct: 298 FDE-------TTAQPQSAKKASAARDNQV-TEEFALFSETEEPNQAEEAPIASNLKTIND 349

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++        Y  I + +   + +++L  + +  F   T ++D   ++ I +A +   QK
Sbjct: 350 VAH------DYRLITDGEGRSKLIKQLAGLKTFCFDTETTSLDTKEARLIGLAFAFEKQK 403

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ +     +         +EIL   +  FENE   K+GHN+KYD  VL 
Sbjct: 404 G--------FYVAVPADPEE--------AREILQEFRAVFENEQIQKVGHNLKYDLAVLK 447

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPIDKI 533
            +G+ + G     ++++ L      H +  +++ +L Y+   I K     +   + +  +
Sbjct: 448 WHGVGVHGKLFDTMLAHSLIEPEMRHGMDYMSEVYLGYSPISITKLIGDEKSKQLNMADV 507

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             ++V E+A E+++V  QLW  L P L  +    V+  ++ P+I V++ ME  GI++D  
Sbjct: 508 PVAKVAEYAAEDADVTWQLWEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDAS 567

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKT 652
            L + S ++SK + + E+ IY L+G++FNL+SP+QLG+ILF KLK    AK TKTGQ+ T
Sbjct: 568 ALAEFSTQLSKEMANHEQTIYRLAGQEFNLNSPRQLGEILFDKLKISENAKKTKTGQYAT 627

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             Q L  +   D+ I++ +L++R  +K+KSTYAD+LP  I K T RVHT ++ A T TGR
Sbjct: 628 NEQTLMDL-AADHEIVQRLLDYRGATKLKSTYADALPGTIWKPTGRVHTTFNQAVTTTGR 686

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQV 770
           L S  PNLQNIPI+T+ G++IR+AF+ P  +   L+SADYSQIELRI+A ++    + + 
Sbjct: 687 LNSQNPNLQNIPIRTEQGKEIRKAFV-PRNEDYVLLSADYSQIELRIIAALSHEQGMLED 745

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   AA ++GV +++V+P+MRR AK +N+ I YGIS F LA +LRIPR EAA 
Sbjct: 746 FGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYGISAFGLAQRLRIPRKEAAT 805

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I++YF ++PGI +Y+  T +F +Q+GYVET+ GRR +  +I S  +++R   ER AINA
Sbjct: 806 IIEQYFAQYPGIAKYMRDTIDFAKQHGYVETVTGRRRYMRDIRSANAAVRGGAERNAINA 865

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AAD+ + AMI++H  L   KL ++MLLQ+HDELVF+V + E     QI+   M  
Sbjct: 866 PIQGTAADMIKIAMINIHGELTKRKLKSRMLLQVHDELVFDVHQTEENEVRQIVEEKMRT 925

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    I L VP++V I     W E
Sbjct: 926 A----IQLEVPIEVEIGSGKTWLE 945


>gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 934

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 366/985 (37%), Positives = 559/985 (56%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T    G+     +  D   KTS   S++  T+  ++   P+         
Sbjct: 292 ------LDGGT----GV-----VTADEQTKTS---SVTVSTAASHAAAIPES-------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ + + + 
Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLDRDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +  +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ I
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMI 552

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G  
Sbjct: 553 DDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 671

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   
Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +
Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINA
Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 851

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + +E +     K+L+Q+HDELVFEV E  ++     +   ME
Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL       +NW +
Sbjct: 912 SAA----ELAVPLVAEAGHGDNWDQ 932


>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 934

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 358/977 (36%), Positives = 540/977 (55%), Gaps = 53/977 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183
                 +G AVTI + DKD  QLV P   L +T+   ++D +  V+ K+G+ PE++V L 
Sbjct: 116 ALQGAADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVVAKFGVRPEQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   +N+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EPV 302
           R LV ++TDV +      L L + N   L        FT+ +  +       A  + EPV
Sbjct: 235 RALVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPV 294

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L       +    E    R T   +   ++  D    +++                   
Sbjct: 295 ALGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPSLSAP------------------ 333

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  I+  +    W+ +L   G  +F   TD++D   +  I ++++  +       
Sbjct: 334 ---GQYDTILTQEQFDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAA-EPGQAAYL 389

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                F    V   +          + L+ L     +    K+G + KYD  V+ R+G+ 
Sbjct: 390 PFGHNFPGAPVQLDR---------TQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVE 440

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           + G+ ED +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS    
Sbjct: 441 LAGYAEDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDA 500

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L  +L P+L  E  L  VY  ++ P++DV++++E  G+ +D   L++
Sbjct: 501 TRYAAEDADITLRLHRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRR 560

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + L
Sbjct: 561 QSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEAL 620

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E I    + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +
Sbjct: 621 EAI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSD 679

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   FE+  D+
Sbjct: 680 PNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADV 739

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF 
Sbjct: 740 HRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFS 799

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AA
Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAA 859

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAM++V   + DH    KM+LQ+HDELVFE   + + T    +   M  A      
Sbjct: 860 DIIKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMAGAA----E 915

Query: 958 LRVPLKVNIKVSNNWQE 974
           LRVPL V+  V +NW +
Sbjct: 916 LRVPLVVDSGVGDNWDQ 932


>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
 gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
 gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
          Length = 928

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 933

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 357/983 (36%), Positives = 541/983 (55%), Gaps = 62/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+ +Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183
              A  +G +VTI + DKD  QLV P   L +T+   ++D +  VI K+G+ P+++V L 
Sbjct: 116 ALQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   +N+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV ++TDV +      L L + N   L        FT+ +  +           EPV 
Sbjct: 235 RELVTIKTDVTLASGPRALDLREPNTETLAVLYARYGFTQALRELGGASAQSGLLSEPVA 294

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L       +    E    R T   +   ++  D    +++                    
Sbjct: 295 LGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPALSAPG------------------ 333

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----- 418
              +Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++    K      
Sbjct: 334 ---AYETILTQEQLDSWIAQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPF 390

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +F    + +D +                 L+ L     +    K+G + KYD  V+ R
Sbjct: 391 GHNFPGAPVQLDRT---------------HALAQLAPLLTDPAVRKVGQHGKYDLHVMRR 435

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           +G+ + G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS
Sbjct: 436 HGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQIS 495

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQD 593
                 +A E++++ L+L  +L PKL  E  L  VY  ++ P++DV++++E  G+ +D  
Sbjct: 496 LDDATRYAAEDADITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAA 555

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L++ SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T 
Sbjct: 556 ELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTN 615

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              LE I    + + + ILE+R LSK++STY D LP  I+ ++ RVHT Y  A   TGRL
Sbjct: 616 EDALEAI-ADQHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRL 674

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   F +
Sbjct: 675 SSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFAS 734

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI 
Sbjct: 735 GTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIA 794

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+Q
Sbjct: 795 LYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQ 854

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAM+ V   + DH    KM+LQ+HDELVFE   + + T    +   M  A  
Sbjct: 855 GTAADIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMASAA- 913

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL V+  V ++W + +
Sbjct: 914 ---ELRVPLVVDSGVGDDWDQAH 933


>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
 gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
          Length = 928

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T+RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 934

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 357/977 (36%), Positives = 541/977 (55%), Gaps = 53/977 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183
                 +G AVTI + DKD  QLV P   L +T+   ++D +  V+ K+G+ PE++V L 
Sbjct: 116 ALQGAADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVVAKFGVRPEQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   +N+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EPV 302
           R LV ++TDV +      L L + N   L        FT+ +  +       A  + EPV
Sbjct: 235 RALVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPV 294

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L       +    E    R T   +   ++  D    +++                   
Sbjct: 295 ALGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPSLSAP------------------ 333

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++  +       
Sbjct: 334 ---GQYDTILTQEQLDNWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAA-EPGQAAYL 389

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                F    V   +          + L+ L     +    K+G + KYD  V+ R+G+ 
Sbjct: 390 PFGHNFPGAPVQLDR---------TQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVE 440

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           + G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS    
Sbjct: 441 LAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDA 500

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L  +L P+L  E  L  VY  ++ P++DV++++E  G+ +D   L++
Sbjct: 501 TRYAAEDADITLRLHRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRR 560

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + L
Sbjct: 561 QSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEAL 620

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E I    + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +
Sbjct: 621 EAI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSD 679

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   FE+  D+
Sbjct: 680 PNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADV 739

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF 
Sbjct: 740 HRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFS 799

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AA
Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAA 859

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAM++V   + DH    KM+LQ+HDELVFE   + + T    +   M  A      
Sbjct: 860 DIIKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMAGAA----E 915

Query: 958 LRVPLKVNIKVSNNWQE 974
           LRVPL V+  V +NW +
Sbjct: 916 LRVPLVVDSGVGDNWDQ 932


>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
 gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
          Length = 928

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 367/986 (37%), Positives = 560/986 (56%), Gaps = 80/986 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + +        
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGL-------- 371

Query: 418 DDTSFKVET---IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF +E+    +I ++ H   D+   + +++E  L  LK   E+E  LK+G N+KYD+
Sbjct: 372 ---SFAIESGVAAYIPVA-HDYLDAP--DQISRERALELLKPLLEDEKALKVGQNLKYDR 425

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ + 
Sbjct: 426 GILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 485

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGI 588
            ++I+  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G+
Sbjct: 486 FNQIALDEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGV 545

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G
Sbjct: 546 KIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T
Sbjct: 606 APSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L 
Sbjct: 665 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAI
Sbjct: 785 QKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H +
Sbjct: 845 NAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQL 903

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            + C     L VPL V +    NW +
Sbjct: 904 MENC---TRLDVPLLVEVGSGENWDQ 926


>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
 gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
          Length = 928

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYATEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
 gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
 gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
 gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
 gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
 gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
          Length = 928

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
 gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
 gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
 gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11]
          Length = 928

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 TLEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
 gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli ED1a]
          Length = 928

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGRGENWDQ 926


>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
 gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
          Length = 928

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVTDEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
          Length = 928

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKXEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGRGENWDQ 926


>gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
          Length = 928

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 367/986 (37%), Positives = 559/986 (56%), Gaps = 80/986 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + +        
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGL-------- 371

Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF +E     +I ++ H   D+   + +++E  L  LK   E+E  LK+G N+KYD+
Sbjct: 372 ---SFAIELGVAAYIPVA-HDYLDAP--DQISRERALELLKPLLEDEKALKVGQNLKYDR 425

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ + 
Sbjct: 426 GILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 485

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGI 588
            ++I+  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G+
Sbjct: 486 FNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGV 545

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G
Sbjct: 546 KIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T
Sbjct: 606 APSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L 
Sbjct: 665 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAI
Sbjct: 785 QKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H +
Sbjct: 845 NAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQL 903

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            + C     L VPL V +    NW +
Sbjct: 904 MENC---TRLDVPLLVEVGSGENWDQ 926


>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
 gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
          Length = 928

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
 gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
          Length = 928

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLQQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
 gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
          Length = 934

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 375/984 (38%), Positives = 552/984 (56%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+     +   SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIM----QYTPSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +     A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFESYKSHRPPMPDDLRAQIEPLHEMVAAMGLPLLVIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV P   L +T+    +  E V  K+G+PP  ++   
Sbjct: 121 LAREASSKGMPVLISTGDKDMAQLVEPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+LE+I  N   I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLEDIYKNLEAIAPLGFRGSKTLAPKMEDNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV +  P E L + + +  +L +     EF + +           A
Sbjct: 241 ELAFLSYQLATIKTDVELDKPCEELKVAELDADKLHALFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E      N T   G   +              S+ + ++ +    Q   K       K
Sbjct: 290 DVE------NGTWMDGKGAK--------------SAKAAESYRAPESQPAAK------AK 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ ++Y  I++   + +WV+KL      +F   TD++D   ++ + ++ + ++  
Sbjct: 324 PAVPTLSAENYETILDKAQLDRWVKKLSESTLFAFDTETDSLDTQEARLVGMSFA-IEAG 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S D         E+++ +K   ENE   KIG N+KYD  VL 
Sbjct: 383 RAAYLPVGHDYLDAPAQLSLD---------EVIAVMKPILENEKIGKIGQNLKYDAEVLL 433

Query: 478 RYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
            Y I ++G   D ML SYVL+S  G   HD+ S+A + L++   + +EI    K  +  +
Sbjct: 434 NYDIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTFN 493

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q   +A E+++V L L   L P+L  E KL HV++ ++ P++ V+ +ME  G+ I
Sbjct: 494 QIPLEQAANYAAEDADVTLLLHQALYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLI 553

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L   S  I+  L  LE+  +DL+GE+FNL+SPKQL  ILF KL+ P   KT +G  
Sbjct: 554 DAAVLTAQSQVITARLAELEKQAFDLAGEEFNLASPKQLQTILFEKLQLPVIKKTPSGAA 613

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++   ++ + K +LE R L+K+KSTY D LP  IN RTQRVHT Y  A T T
Sbjct: 614 STNEEVLEELAL-NHALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTAT 672

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++T+ G++IR+AF++    K+++ADYSQIELRI+AH+++   L   
Sbjct: 673 GRLSSRDPNLQNIPVRTEEGRRIRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLLTA 732

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+FGV +E+V+   RR AK INF +IYG+S F LA QL IPR EA  
Sbjct: 733 FAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQR 792

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+  Y+E T+    + GYVET+ GRR++  +I S     R   ER AINA
Sbjct: 793 YMDLYFERYPGVLRYMENTRLQASERGYVETLEGRRLYLADIKSSNGMRRKAAEREAINA 852

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI ++AMI+V   LE  K +  ML+Q+HDELVFEV E E+      +   ME+
Sbjct: 853 PMQGTAADIIKKAMIAVDNWLETEKPSADMLMQVHDELVFEVKESELEKVQAKVQELMEQ 912

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           +    + L VPLKV + V +NW E
Sbjct: 913 S----MTLDVPLKVEVGVGSNWDE 932


>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
 gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
          Length = 933

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 372/984 (37%), Positives = 549/984 (55%), Gaps = 71/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFR+E++ +YK++RP +P+ L  Q+ PL R+  +A G+P +   G EADD+I 
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHRM-VKAMGLPLLVTPGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AEK G AV I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++  
Sbjct: 120 TLAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNTILGPQEVCDKYGVPPELIIDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N   I        K     + + 
Sbjct: 180 LALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYGNLDGIAALSFRGAKTMAAKLEQN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS +L  ++TDV + I    L + + +  +L    K  EF + +           
Sbjct: 240 KEVAYLSYQLATIKTDVELEITCADLTVAEQDADQLQQLFKHYEFKRWL----------- 288

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           A++E      N   N                           +K+ +   P  +  E  +
Sbjct: 289 ADVEAGTWLQNKKGNG--------------------------AKVANGPKPSSVTAETPK 322

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            +++  ++ + Y  I+      +W+++L+     +F   TD +D   +  I ++ + ++ 
Sbjct: 323 AVAEAKLSQEGYVTILEESTFVEWLERLKKADVFAFDTETDGLDTLTANLIGLSFA-IEP 381

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  V   ++D  V   +           +L  LK   E+E  LK+G N+K+DK +L
Sbjct: 382 GVAAYLPVAHDYLDAPVQLDR---------AYVLETLKPLLEDEKALKVGQNLKFDKSLL 432

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            RY I +RG   D ML SYVLDS    HD+ S++ ++L +   T +EI    K+ +  ++
Sbjct: 433 ARYDIDLRGIAYDTMLESYVLDSVSGRHDMDSLSDRYLDHKTITFEEIAGKGKNQLTFNQ 492

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I+  Q   +A E+++V LQL L + PKL      L V+  ++ P++ V+S +E TG+ ID
Sbjct: 493 IALEQAAPYAAEDADVTLQLHLAMWPKLKESTGQLKVFNEIEMPLLPVLSHIERTGVLID 552

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           Q +L   S E+SK L  LE   ++L+ E FNL+S KQL  IL+ K K P   KT  G   
Sbjct: 553 QHILAAHSKELSKRLGELEIQAHELAEEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPS 612

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++   D P+ K ILE+R L+K+K+TY D LP  IN  + RVHT Y  A T TG
Sbjct: 613 TNEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATG 671

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F
Sbjct: 672 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPAGYRIVAADYSQIELRIMAHLSQDRGLLNAF 731

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  A E+FG+ ++KV+ + RR AK INF +IYG+S F LA QL IPR EA  Y
Sbjct: 732 AAGKDIHRATAGEVFGLPLDKVTNEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRY 791

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ EY+E+T+    + GYV T+ GRR++  ++ S     R   ERAAINAP
Sbjct: 792 MDLYFERYPGVLEYMERTRQQASEQGYVSTLDGRRLYLPDVRSSNGMRRKAAERAAINAP 851

Query: 892 IQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI +RAMI+V   L+  +    +M++Q+HDELVFEV E  +  A   I   ME 
Sbjct: 852 MQGTAADIIKRAMIAVDAWLQGQQQPLVRMIMQVHDELVFEVHESAMDDACLRIRSLMEG 911

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           +    + L VPLKV+I V  NW E
Sbjct: 912 S----MELAVPLKVDIGVGKNWDE 931


>gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
          Length = 928

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPS 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 943

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 369/990 (37%), Positives = 572/990 (57%), Gaps = 70/990 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++ L LVDGSS++YRAF+A P L R   G P  AI G  NM+    + +R E  A H A 
Sbjct: 3   KHRLLLVDGSSYLYRAFHAMPDL-RNGAGEPTGAIYGMVNMM----RRARSELKADHIAC 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YKA+R  +PE L+ Q+  +    +A G P + + G EADD+I T
Sbjct: 58  VFDAKGKTFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKAMGWPVLMVSGVEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G+   I + DKDL QLV+P+  L +T+  EK+DIE VI+K+G+PPE +V   
Sbjct: 118 LACQATEAGWETIISTGDKDLAQLVNPSVTLINTMTNEKLDIEGVIEKFGVPPELIVDYL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           ++ GD++DN+PG+P  G KTA   L E+GNL+N++ NA ++K     EN+         +
Sbjct: 178 SIIGDTVDNVPGVPKAGPKTANKWLAEFGNLDNLMANADQVK-GVVGENLRASLTWLPQA 236

Query: 244 RKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYD--CDAAN 298
           R+L+ ++TD  ++  +P L+ L  +  +   L    +   F   +  V    +   D  +
Sbjct: 237 RQLITVKTDCDLSPHLPGLDDLHEKSEDAALLRELFERYAFKTWLRDVEKQLNNPSDGGS 296

Query: 299 IEPVVLDINTTENKGIAIET---EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
              V  D+  +     + ET   E+ R   I T+    L+ QTS +          +ER 
Sbjct: 297 GAAVTFDLAGSPITNSSSETDSGELKR--VIATAPTKGLTQQTSDLQDA-------IER- 346

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +V+ + +++W++K+E     +    T ++DA  ++ + I++S   
Sbjct: 347 -----------HYECVVDEESLERWMKKIEAAELTAVDTETTSLDALAAELVGISLSVKP 395

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
                    E  +I ++        G+  L++E +L  +K + E+   LK+G N+KYD  
Sbjct: 396 G--------EACYIPVA-----HRNGEAQLSRELVLKRMKSWLESSSHLKVGQNLKYDIH 442

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
           +   Y I + G   D +L SYVL+S    H++ S+A++ L       +E+       I  
Sbjct: 443 IFANYDIHLEGIAFDTLLESYVLES-HLPHNMDSLAERHLGLKTIRYEEVCGKGVHQIGF 501

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           D++       +A E++++ L+L L L P++     LL+VYE+++ P + V+  ME  GI+
Sbjct: 502 DQVDLQIATNYAAEDADITLRLHLELWPQIQASPGLLYVYEKIEMPAMLVLGIMERNGIR 561

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID  LL +   ++ K LL LE  I+ L+G+ FN+ SPKQ+ +ILF +L+ P   KT +G 
Sbjct: 562 IDSALLAKQGQQVGKRLLELEGEIHRLAGQPFNIQSPKQIAEILFGQLELPIVKKTPSGA 621

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L+++   D P+   IL++R L+K+ STY + LP   + +T R+HT +S A+ +
Sbjct: 622 PSTDEEVLQKL-AEDYPLPARILDYRSLAKLMSTYIEKLPRMADPKTGRIHTNFSQATAV 680

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS +PNLQNIP++T+ G++IR AFI     KL+SADYSQIELRI+AHIA+   L  
Sbjct: 681 TGRLASSDPNLQNIPVRTEEGRRIREAFIPADGCKLLSADYSQIELRIMAHIAEDENLLT 740

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   D+H+  AAEIFG+ ++ V+ + RR+AK INF +IYG+S F LA  L I R+ A 
Sbjct: 741 AFKEGKDVHQATAAEIFGIPLDDVNSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQ 800

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +YI +YF R+PG+ +Y+E+T+   R+NGYVET+FGRR+   EI       R   ERAAIN
Sbjct: 801 NYIAKYFDRYPGVAQYMERTRLEARENGYVETVFGRRLWLPEIKGSNGPRRQGAERAAIN 860

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AAD+ + AMI+V   LE  +L TKMLLQ+HDELVF+VP +EI          + 
Sbjct: 861 APMQGTAADLIKLAMIAVEDWLEKEQLKTKMLLQVHDELVFDVPLDEI---------DLL 911

Query: 950 KACLPKI-----NLRVPLKVNIKVSNNWQE 974
           +A LP +      L+VPL V+I + +NW+E
Sbjct: 912 QAKLPDLMCHVAQLKVPLVVSIGIGDNWEE 941


>gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
          Length = 928

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
 gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
 gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
 gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
 gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
 gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
 gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
 gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
 gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
 gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
 gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9]
 gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B]
 gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
 gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736]
 gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
 gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
 gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
 gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
 gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
 gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K12 substr.
           W3110]
 gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
 gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
 gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
 gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
 gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
 gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
 gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
 gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli 55989]
 gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI1]
 gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
 gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Escherichia coli BL21(DE3)]
 gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
 gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
 gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
 gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
 gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
 gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
 gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
 gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
 gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
 gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
 gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
 gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
 gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
          Length = 928

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
 gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
 gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
 gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli S88]
 gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
 gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
 gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
 gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
          Length = 928

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGRGENWDQ 926


>gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272]
          Length = 928

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 362/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S +           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ER AINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERTAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 928

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933]
 gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
 gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
 gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
 gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
 gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
 gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
 gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
 gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
 gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88]
          Length = 928

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV  +++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
 gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
          Length = 928

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAKLEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
 gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
          Length = 928

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
 gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
 gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
 gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
          Length = 928

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
 gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
          Length = 928

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGRGENWDQ 926


>gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
          Length = 928

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
 gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
          Length = 928

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 367/986 (37%), Positives = 559/986 (56%), Gaps = 80/986 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RLQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + +        
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGL-------- 371

Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF +E     +I ++ H   D+   + +++E  L  LK   E+E  LK+G N+KYD+
Sbjct: 372 ---SFAIEPGVAAYIPVA-HDYLDAP--DQISRERALELLKPLLEDEKALKVGQNLKYDR 425

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ + 
Sbjct: 426 GILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 485

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGI 588
            ++I+  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G+
Sbjct: 486 FNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGV 545

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G
Sbjct: 546 KIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQSIKPLKKTPGG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T
Sbjct: 606 APSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L 
Sbjct: 665 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAI
Sbjct: 785 QKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H +
Sbjct: 845 NAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQL 903

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            + C     L VPL V +    NW +
Sbjct: 904 MENC---TRLDVPLLVEVGSGENWDQ 926


>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
 gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
          Length = 928

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLELFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
          Length = 891

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 353/973 (36%), Positives = 535/973 (54%), Gaps = 94/973 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LFL+DGSS+IYRA++A   LS    G P NA+ GF  ML K++    K+      AV+FD
Sbjct: 6   LFLIDGSSYIYRAYFAIRHLSSPA-GFPTNALYGFTQMLLKVI----KDHHPGRLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR EIYPDYKANR  +P+ L+PQ+  ++   +AF IP +E++G+EADDII T   
Sbjct: 61  KGRTTFRTEIYPDYKANRAAMPDDLVPQIGPIKEMVRAFSIPVLELEGYEADDIIGTIAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             E++G    +++ DKDLMQ+VS    L DT+K+    I  V++++G+ P +++ +  L 
Sbjct: 121 RCEEQGLEAVVVTGDKDLMQIVSDRIRLLDTMKDRVSGIPEVVERFGVGPGQVIDILGLA 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+PGIG KTA  L+QE+G+L+ +L  A  +K K   E + E+AE ARLSR+L
Sbjct: 181 GDTSDNIPGVPGIGEKTATKLIQEFGSLDALLERAGEVKGKTG-ERLREFAEQARLSRRL 239

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  DVP+                                    +D DA  + P     
Sbjct: 240 ATIVRDVPLD-----------------------------------FDLDAFAVAP----- 259

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +N+ +A           K   F++L     ++ SE T                +  +
Sbjct: 260 --ADNRRLA--------ELFKEYGFTTL---MKELTSEAT----------------LTTE 290

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I    D +  +  L   G  S  + T +++   +  + I++S  D         E 
Sbjct: 291 HYRTIFAEADFRALLADLAGAGVFSVDLETTSLNPLEADIVGISLSFRDH--------EA 342

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
            +I   V  + D          +L  L+    +    K+G N+KYD  VL R+GI M G 
Sbjct: 343 CYI--PVGHAYDGAPAQLDRTLVLEGLRPLLTDPAVRKVGQNLKYDYQVLRRHGIVMAGV 400

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D M+ SY+++  RS H + S+A + L +   + +E+    K  +   ++   +   ++
Sbjct: 401 WCDTMVASYLINPVRSGHGLDSLAVEHLDHRMISYEEVAGKGKDQLNFARVPVEKASTYS 460

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E+++    L  L  P++    +  ++  L+ P++ ++++ME  G+++D  LL ++SA +
Sbjct: 461 CEDADAAWLLHRLFLPRVAEAGMERLFFDLEMPLVPILAEMETAGVKLDLALLGELSAGL 520

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT-GQWKTTAQDLEQIN 661
              L +LEE +  L+ E FNL+SPKQLG++LF K+K P+G KTKT   W T  ++LE++ 
Sbjct: 521 GSQLTALEEQVMALAPEPFNLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLA 580

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              + I   IL +R L+K+KSTY D+LP  ++  + RVHT Y+   T TGRL+S EPNLQ
Sbjct: 581 EAGHEIAAAILRYRGLAKLKSTYTDALPRLVHPASGRVHTSYNQTVTNTGRLSSSEPNLQ 640

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++TD G+KIRRAFI+     ++SADYSQIELR+LAH+++       F    DIH   
Sbjct: 641 NIPVRTDEGRKIRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCDAFARDEDIHTRT 700

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FG+  E V+P+MRR AK INF +IYG   F LA QL I    A ++I  YF R PG
Sbjct: 701 AAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNYFARHPG 760

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
              +++         GYV T+ GRR+   +I S   +IR   +R A+N PIQGSAADI +
Sbjct: 761 ARAFLDGCVAEAEARGYVTTLMGRRLPIPDIASSNGNIRAFAQRNAVNYPIQGSAADIIK 820

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AM+ V + +    L +++++Q+HDELVFEVPE E T   +++ H ME A      LRVP
Sbjct: 821 AAMVRVTERMRREGLTSRLIMQVHDELVFEVPEGERTAMERLVQHEMEHAA----PLRVP 876

Query: 962 LKVNIKVSNNWQE 974
           L+ ++ V  NW E
Sbjct: 877 LRADVNVGRNWSE 889


>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
 gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
          Length = 934

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 366/985 (37%), Positives = 558/985 (56%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T    G+     +  D   KTS   S++  T+  ++   P+         
Sbjct: 292 ------LDGGT----GV-----VTADEQTKTS---SVTVSTAASHAAAIPES-------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ + + + 
Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +  +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ I
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMI 552

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G  
Sbjct: 553 DDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 671

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   
Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +
Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S     R   ERAAINA
Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNVMRRKAAERAAINA 851

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + +E +     K+L+Q+HDELVFEV E  ++     +   ME
Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL       +NW +
Sbjct: 912 SAA----ELAVPLVAEAGHGDNWDQ 932


>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
 gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
          Length = 933

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 352/978 (35%), Positives = 541/978 (55%), Gaps = 52/978 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183
                 +G  VTI + DKD  QLV P   L +T+   ++D +  VI K+G+ P+++V L 
Sbjct: 116 ALQGAADGLQVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   +N+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV ++TDV +      L L + N   L        FT+ +  +           EPV 
Sbjct: 235 RELVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAQAGLLAEPVA 294

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L       +    E    R T   +   ++  D    +++                    
Sbjct: 295 LGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPSLSAP------------------- 332

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++        +  
Sbjct: 333 --GQYETILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVA--------AEP 382

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +  ++    H             + L+ L     +    K+G + KYD  V+ R+G+++
Sbjct: 383 GQAAYLPFGHHFP--GAPAQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVAL 440

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS     
Sbjct: 441 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDAT 500

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L P+L  E  L  VY  ++ P++DV++++E  G+ +D   L++ 
Sbjct: 501 RYAAEDADITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQ 560

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + LE
Sbjct: 561 SADLSKRMLAAQQKATELAGRSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALE 620

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            I    + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +P
Sbjct: 621 AI-ADQHELPRVILEYRGLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 679

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+H
Sbjct: 680 NLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 739

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R
Sbjct: 740 RATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 799

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AAD
Sbjct: 800 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 859

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAM++V   + +H    KM+LQ+HDELVFE   + + T    +   M  A      L
Sbjct: 860 IIKRAMVNVDGWIANHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMAGAA----EL 915

Query: 959 RVPLKVNIKVSNNWQEEN 976
           RVPL V+  V +NW + +
Sbjct: 916 RVPLMVDSGVGDNWDQAH 933


>gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
          Length = 928

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D   ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADDAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
          Length = 928

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P  L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70]
 gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218]
          Length = 928

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 366/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +       T D +A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TADVEAG 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       + KG           T    Q +S++D+  ++ +              
Sbjct: 295 KW---------LQAKGA---------KTAAKPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S +           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1]
          Length = 911

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 358/975 (36%), Positives = 549/975 (56%), Gaps = 78/975 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LFL+DGS ++YRAF+    L+R+ DG P NAI GF  ML K++++ + + +     + FD
Sbjct: 6   LFLIDGSGYLYRAFFGVRNLTRR-DGFPTNAIFGFIKMLRKVIEDEKPDFVT----IAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKANR  +P+ L  Q+P++     AF IP I ++G+EADDII T+  
Sbjct: 61  TKAPTFRHTMDAQYKANRKPMPDELRVQIPVIHDVIDAFNIPRIALEGYEADDIIGTFAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +    G  V ++S DKDLMQL++P   ++D  K++    E V++ WG+  E++  L  L 
Sbjct: 121 LGCAAGVEVVVVSGDKDLMQLITPQVKMFDGSKDKWYGPEDVVESWGVAAERIPDLLGLA 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+ GIG KTAA L+ E+G+LE +L  A RIKQ KRR  +LE A+TAR S +L
Sbjct: 181 GDTSDNIPGVGGIGPKTAAQLIAEFGSLEGVLHGAERIKQPKRRTALLEQADTARRSLQL 240

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  +VP+   L+   ++  N  RL    + + F  L                      
Sbjct: 241 ATINREVPLPFDLQGARMQRPNWARLREIYQDMSFATL---------------------- 278

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSL-SDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                   A E E          Q  +L S+    I  E  P+ L             N 
Sbjct: 279 --------AREAE---------KQLQALGSEAAPSIQIETQPESL------------PNQ 309

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  I +    Q ++++L+  G   F + T+T D        + IS   Q         
Sbjct: 310 PNYQVITSEAAFQAFMEQLK--GLPRFAVDTETTDLHPHSAELVGISIAWQP-------- 359

Query: 426 TIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
            +   + V  + D+  +  L + ++L+ LK   E+    K G NIKYD  +  RY I+M+
Sbjct: 360 MVAYYIPVGHALDAAPEGQLPRADVLAALKPLLESPEIGKTGQNIKYDYQIFKRYHITMQ 419

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540
           G E D ML SY+L     +H++ +IA + L  T    +++    +  I  D++       
Sbjct: 420 GIERDSMLYSYLLYGANRAHNLDAIATEELGRTTIKFEDVAGKGRKRIRFDQVPLHLAAP 479

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++ V  Q    + P L  E  L  +YE +++P+I V+++ME  G+ +D+D+L  +S
Sbjct: 480 YACEDAEVTWQAAASMAPNLDREPGLKRLYETIERPLIPVLAEMEYAGVLVDRDVLSTMS 539

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A+ SK    L E I++L+GE FN++S +QLG ILF K+    G +TK+G + T    L +
Sbjct: 540 ADFSKRRARLVEEIHELAGEVFNVNSTQQLGHILFEKMGIKGGKRTKSG-FSTDVSVLSK 598

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +      I + +L +R L+K++STY D+L   I+  T RVHT Y+ A T+TGRL+S +PN
Sbjct: 599 LADDGEKIPQQVLAYRSLTKLQSTYTDALVALIHPYTGRVHTSYNQAVTLTGRLSSSDPN 658

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G+ IR AFI+P    L++ADYSQIELR+LAH+  ++ L + F   LDIH 
Sbjct: 659 LQNIPIRTEEGRAIRTAFIAPAGWSLLAADYSQIELRVLAHMGNVSRLKEAFHAGLDIHA 718

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FGV + +V+ + RR AKTINF ++YG+SPF LA +L I  +EA  Y+  YF R+
Sbjct: 719 ATAAELFGVPLAQVTGEHRRMAKTINFGLVYGMSPFGLAKRLGIQNNEARAYMDLYFARY 778

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ ++++ T    R +G+VET+ GRR    +IN+ + S+R   ER AINAP+QGSA+D+
Sbjct: 779 DGVRQHMDATIRDARAHGFVETLGGRRCPIRDINATQRSLREFAERTAINAPLQGSASDL 838

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI +H +L+      +M+LQ+HDELV EVP++E+    +++   ME      + L 
Sbjct: 839 IKLAMIRLHGALQAGGFKARMVLQVHDELVLEVPDKELAAVKEVVRSCMEGV----MTLS 894

Query: 960 VPLKVNIKVSNNWQE 974
           +PL V++ V  NW E
Sbjct: 895 IPLVVDMGVGQNWGE 909


>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
 gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
          Length = 928

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 362/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLQYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
 gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
          Length = 927

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 367/983 (37%), Positives = 554/983 (56%), Gaps = 75/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN + LVDGSS++YRA++A P L+ +  G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPIILVDGSSYLYRAYHAFPPLTNRA-GEPTGAMYGVLNMLKSLLVQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIAPLHDMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLVSP   L +T+    +  E V  K+G+PPE ++   
Sbjct: 121 LALAAARGGRDVLISTGDKDMAQLVSPKITLINTMSNTILGPEEVQLKFGVPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-----INASRIKQKKRRENILE-YA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G LE++      +++   +  K     LE + 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLESLYQQLDSVSSLSFRGAKTMAAKLEQHR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDVP+ +P + L +E+     L+   +  EF + ++      D +A 
Sbjct: 241 EVAFLSYQLATIKTDVPLDLPYDRLTVEEPEAEALMLLFQRYEFKRWLS------DLEAG 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ-FSSLSDQTSKINSEQTPQKLFLERLQ 356
                                 + R + +  S  F++     ++  +E            
Sbjct: 295 KW--------------------LQRKSAVAPSPPFTAPRPAAAEEPTEA----------- 323

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 ++ D Y  I     ++ W+  +   G  +F   TD +D   +  I +  + +  
Sbjct: 324 ------LSKDGYVIIDTMATLEMWIGAIRHAGVFAFDTETDGLDTLTANLIGLCFA-VKP 376

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     V   ++D     + D   + T    +L+ LK   E+    KIG N+K+D+ VL
Sbjct: 377 GEAAYLPVGHDYLD-----APDQLDRAT----VLAALKPVMEDPTIGKIGQNLKFDRGVL 427

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            RY I + G   D ML SYVLDS    HD+ S+A+++L +T    +EI    ++ +  ++
Sbjct: 428 KRYDIELAGIAFDTMLESYVLDSVAGRHDMDSLAERFLQHTTVSFEEIAGKGRNQLTFNQ 487

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I+  Q   +A E+++V L+L   L P++    +L  V+E ++ P++ V+S++E TG+ ID
Sbjct: 488 IAMEQAASYAAEDADVTLRLHQKLWPRIEQAPELRRVFEEIEMPLVPVLSRIERTGVLID 547

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           + +L   S E++K L  LE   + L+ E FNLSS KQL +IL+ K K P   KT  G   
Sbjct: 548 ESILAAHSVELAKRLEELEGEAHQLAEEPFNLSSTKQLQEILYDKQKLPVLKKTPGGAPS 607

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  ++RVHT Y  A T TG
Sbjct: 608 TNEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPQMINPLSKRVHTSYHQAVTATG 666

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ D G++IR+AFI+PP   +++ADYSQIELRI+AH+A+   L   F
Sbjct: 667 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPPDALIVAADYSQIELRIMAHLARDPGLLNAF 726

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAE+FG+++EKV+   RR AK INF +IYG+S F LA QL +PRSEA  Y
Sbjct: 727 AAGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINFGLIYGMSAFGLARQLSVPRSEAQKY 786

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ EY+E+T+      GYVET+ GRR++  +I+S     +   ERAAINAP
Sbjct: 787 MNLYFERYPGVLEYMERTRRQASDRGYVETLDGRRLYLLDIHSRNGMRKKGVERAAINAP 846

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG++ADI +RAMI++   L+      +M++Q+HDELVFEV  + + +A   I   ME  
Sbjct: 847 MQGTSADIIKRAMIAIDGWLQQEAPPVRMIMQVHDELVFEVQRDAVESAKARIKALME-G 905

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
           C     L VPL+V++ V  NW +
Sbjct: 906 CF---KLDVPLQVDVGVGENWDQ 925


>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 933

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 352/976 (36%), Positives = 540/976 (55%), Gaps = 52/976 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+++Y DYKANRP +PE L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDDLYADYKANRPPMPEDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183
                 +G  VTI + DKD  QLV P   L +T+   ++D +  VI K+G+ P+++V L 
Sbjct: 116 ALQGAADGLQVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   +N+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV ++TDV +      L L + N   L        FT+ +  +           EPV 
Sbjct: 235 RELVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAQAGLLAEPVA 294

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L       +    E    R T   +   ++  D    +++                    
Sbjct: 295 LGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPSLSAP------------------- 332

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++        +  
Sbjct: 333 --GQYETILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVA--------AEP 382

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +  ++    H             + L+ L     +    K+G + KYD  V+ R+G+++
Sbjct: 383 GQAAYLPFGHHFP--GAPAQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVAL 440

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS     
Sbjct: 441 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDAT 500

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L P+L  E  L  VY  ++ P++DV++++E  G+ +D   L++ 
Sbjct: 501 RYAAEDADITLRLHRVLGPRLASEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQ 560

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + LE
Sbjct: 561 SADLSKRMLAAQQKATELAGRSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALE 620

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            I    + + + ILE+R L+K++STY D LP  ++ ++ RVHT Y  A   TGRL+S +P
Sbjct: 621 AI-ADQHELPRVILEYRGLAKLRSTYTDKLPEMVHPQSGRVHTSYHQAGAATGRLSSSDP 679

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+H
Sbjct: 680 NLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 739

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R
Sbjct: 740 RATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 799

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AAD
Sbjct: 800 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 859

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAM++V   + +H    KM+LQ+HDELVFE   + + T    +   M  A      L
Sbjct: 860 IIKRAMVNVDGWIANHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMAGAA----EL 915

Query: 959 RVPLKVNIKVSNNWQE 974
           RVPL V+  V +NW +
Sbjct: 916 RVPLVVDSGVGDNWDQ 931


>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
 gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
          Length = 928

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 362/982 (36%), Positives = 556/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +PV                           Q + ++D+  ++N+              
Sbjct: 301 GAKPVA------------------------KPQETLVTDEAPEVNATT------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++   ++ W+ +LE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEDTLKAWITRLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++          +L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYVPVAHDYLDAPEQISRE---------RVLELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            Y I +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYDIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPQDHVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  K   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEKPRVRMIMQVHDELVFEVHKDDLDVVAKKI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
 gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
          Length = 920

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 369/981 (37%), Positives = 543/981 (55%), Gaps = 82/981 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS++YRAF+A P L+   +G P  AI G  NML KL  + +        AVIFD
Sbjct: 7   IVLVDGSSYLYRAFHAMPPLT-TSNGQPTGAIKGVLNMLRKLQADVKP----LRMAVIFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++I+P+YKA RP +P+ L  Q+  +    +A G+P I I G EADD+I TY  
Sbjct: 62  AKGKTFRDDIFPEYKAQRPPMPDDLRAQIEPLYDCIRALGLPLISISGVEADDVIGTYCV 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G  V + + DKD+ QLV+    L +T+ +  +D + VI+K+G+PPE++V    L 
Sbjct: 122 EASRLGERVLVSTGDKDIAQLVNEHVTLINTMNDTLLDRDGVIEKFGLPPEQIVDYLTLV 181

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DNIPG+P  G KTA   L +YG+L+N++ +A  IK  K  EN+    E   LSR+L
Sbjct: 182 GDSVDNIPGVPKCGPKTALKWLDDYGSLDNLIAHADEIK-GKVGENLRASLEQIPLSRQL 240

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA--NIEPVVL 304
             ++ DVP+   +  L LE+ N  +L+   + LEF   ++ +  + +   A  N   V +
Sbjct: 241 ATIKCDVPLAQGVMELQLENANTEKLVELYQQLEFKSWLHDLLGSNEAAGAHQNGASVSI 300

Query: 305 DINTTEN----KGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              T E+     G A E E D                                       
Sbjct: 301 ASPTAESIPTQDGFAFEPEND--------------------------------------- 321

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I++  ++++WV +L  + S  F + T+T    +     + IS   Q  + 
Sbjct: 322 -------YHTILDAAELERWVVRL--LASDVFSVDTETTSLNYMDAELVGISFSLQAGEA 372

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           ++        + V  +   T +      +L+ LK   E E   KIG N+KYD  VL RYG
Sbjct: 373 AY--------VPVGHTAIGTPEQLPLDYVLNALKPILEAETPAKIGQNLKYDMNVLARYG 424

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
           I++ G   D ML SYVLD+  + HD+ S+A K+L   +   +++       I  D++   
Sbjct: 425 ITLSGVRFDTMLESYVLDAAATRHDMDSLALKYLGQKTIAFEDVAGKGAKQITFDQVPLL 484

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           Q   +A E+++V L+L   L P+  V+K   L  V++ ++ P++ V+S+ME  G +ID  
Sbjct: 485 QAATYAAEDADVTLKLHQALWPR--VQKTPTLTKVFQEIEMPLVGVLSRMEREGARIDVA 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            LKQ S ++ + +  LE   + L+G+ FNL+SPKQLG+IL+ +L+ P   KT  G   T 
Sbjct: 543 ALKQQSRQLGERMAELEAEAHTLAGQPFNLASPKQLGEILYDQLQLPILKKTPKGAPSTD 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              L+ +   D  + K +LE+R  +K+KSTY D LP  +N RT R+HT Y  A   TGRL
Sbjct: 603 ESVLQDL-AHDYELPKVLLEYRGCAKLKSTYTDKLPELVNPRTGRIHTSYHQAVASTGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G+KIR+AFI+ P   +++ADYSQIELRI+AH++    L   F  
Sbjct: 662 SSSDPNLQNIPIRNESGRKIRQAFIAEPGFTMVAADYSQIELRIMAHLSDDESLIDAFAR 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIHR  AAE+ GV +E V+  MRR AK +NF +IYG+S F LA QL I R +A  Y+ 
Sbjct: 722 GLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMSAFGLARQLGISREQAQAYMD 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYFHR+PG+  Y+E  +      GYVET+FGRR++  E+ +     R   ER AINAP+Q
Sbjct: 782 RYFHRYPGVLRYMEDIRKQAHDQGYVETLFGRRLYLPEVRAASKMRRQAAERVAINAPMQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI +RAMI +   L       +M++Q+HDELVFEVP + +  A + I   M  A  
Sbjct: 842 GSAADIIKRAMIDIDTWLRTQPAKIRMIMQVHDELVFEVPNDVVPDAIEQIQKRMSGAA- 900

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
              +L+VPL V      NW++
Sbjct: 901 ---SLKVPLIVEAGTGTNWEQ 918


>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
 gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
          Length = 929

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 367/983 (37%), Positives = 552/983 (56%), Gaps = 73/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYKP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V++K+GIPP  M+   
Sbjct: 121 LALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKDIYANLDKVATLTFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L +E      L++  K  EF + I  +      D  
Sbjct: 241 EMALLSYQLATIKTDVELELNSDQLTVEQPAVEELLALFKHYEFKRWITDLE-----DGK 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            ++          NKG              T + +++ D+ +   +              
Sbjct: 296 WLQ---------GNKG-----------NPSTKKVAAVQDEPAVAEAASV----------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                +++D Y  I++ +    W++KL+     +F + TD++D   +  I I+ +T    
Sbjct: 325 -----LSSDGYVTILDEETFTSWLKKLQHSELFAFDLETDSLDTLSANIIGISFATA-PG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +          ++L+ LK   E+    K+G N+K+D+ VL 
Sbjct: 379 EAAYLPVAHDYLDAPEQLDR---------SDVLARLKPLLEDPQSQKVGQNLKFDRGVLK 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I + G   D ML SY L+S    HD+ ++A +WL +   T +EI    K+ +  ++I
Sbjct: 430 RYDIELLGIRFDTMLESYALNSVAGRHDMDTLASRWLQHKTVTFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L  E+   +V+E+++ P++ V+S++E  G+ IDQ
Sbjct: 490 ALEQAAHYAAEDADVTLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQ 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+   L  LE   ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 550 SILAVHSQELGSRLAELELKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R L+K+KSTY D LP  IN  + RVHT Y    T TGR
Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLSQDKGLLSAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIHR  AAE+FGV ++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 729 SEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T+    Q GYV T+ GRR++  +IN+  +  R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   LE       KM++Q+HDELVFEV  + +  A   I   ME +
Sbjct: 849 QGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQVHDELVFEVQADAVEAACAQIRALMEGS 908

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPL+V+I V +NW +
Sbjct: 909 ----MKLDVPLRVDIGVGDNWDQ 927


>gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
          Length = 928

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 365/982 (37%), Positives = 558/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +       T D +A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TADVEAG 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       + KG         +      Q +S+ D+  ++ +              
Sbjct: 295 KW---------LQAKG---------EKPAAKPQQTSVVDEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
 gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
          Length = 928

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P  L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGPAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
          Length = 928

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEEILKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
 gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
 gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
           exonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
          Length = 928

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 362/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLGYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
 gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
          Length = 934

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 364/985 (36%), Positives = 558/985 (56%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDRQGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T    G+     +  D   KTS   S++  T+  ++   P+         
Sbjct: 292 ------LDGGT----GV-----VTADEQTKTS---SVTVSTAASHAAAIPES-------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ + + + 
Sbjct: 326 -PAAHIDRSQYQTILNEQDFQHWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLDRDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +  +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ I
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEIPLVPVLSRIERTGVMI 552

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G  
Sbjct: 553 DDMLLSAQSQEIALRLDQLEQKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTAT 671

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   
Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +
Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINA
Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 851

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + +E +     K+L+Q+HDELVFEV E  ++     +   ME
Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL       +NW +
Sbjct: 912 SAA----ELAVPLVAEAGHGDNWDQ 932


>gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
 gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
          Length = 908

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 371/982 (37%), Positives = 547/982 (55%), Gaps = 89/982 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  AI G  +ML +L  + + E      A +FD
Sbjct: 4   LLLVDGSSYLYRAFHALPDL-RTSKGEPTGAIRGVLSMLRRLESDYKAE----FRACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP YKANRP +P+ L  Q+  +  A +A G P + + G EADD+I T T 
Sbjct: 59  AKGKTFRDDWYPQYKANRPSMPDDLRAQVGPLHEAVKAEGWPLLCVDGVEADDVIGTLTR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G+ V I + DKDL QLV P     +T+ +E +D   V  K+G+PP  +V   AL 
Sbjct: 119 RALERGWEVVISTGDKDLTQLVRPGVRWVNTMSDEVLDEAGVAAKFGVPPALIVDYLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L EYG L+N++ NA ++  K   EN+ ++ E   L ++L
Sbjct: 179 GDTVDNVPGVEKCGPKTAVKWLTEYGTLDNLVANADKVGGKVG-ENLRKHLEFLPLGKRL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V + TD+ + I LE L   D +   L +  +  EF   +  +      DA          
Sbjct: 238 VTVATDLALPIQLEDLPARDDDKAALRALYERFEFRGWLQAIDDAAKSDAG--------- 288

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                        +D         F+  +D  S +                 S+   +  
Sbjct: 289 -------------VD---------FAGKNDGLSPV-----------------SEPGAHRA 309

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I++     +W+ KLE     +F   T ++D   +K + ++ + ++         E 
Sbjct: 310 GYESILDWSTFDRWLAKLEAADLVAFDTETTSLDQMAAKLVGMSFAIVEG--------EA 361

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            ++ L+ H    +  +  L  E+L+ LK + E++   K+G N+KYD  VL  +G+ + G 
Sbjct: 362 AYLPLA-HIYPAAPAQLPLA-EVLAKLKPWLESDAHPKLGQNLKYDAHVLANHGLRLGGI 419

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLS-----YTRKEILKSRKSSIPIDKISDSQVQE 540
             D +L SYVL+S R  HD+ S+A++ L      YT   +       I  D+++  +  E
Sbjct: 420 AHDTLLQSYVLESDRP-HDMDSLAKRHLGIDTIPYT--AVCGKGVGQICFDQVAIERATE 476

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHV-YERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L   L P+L     L   Y  ++ P + V+  ME TG+ ID  LL Q S
Sbjct: 477 YAAEDADITLRLHRKLWPQLEAAPALAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQS 536

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + L++LE   +DL+G+ FNL SPKQLG+ILF KL  P   KT TGQ  T  + L Q
Sbjct: 537 EELGRRLMTLEREAHDLAGQPFNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLAQ 596

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D P+ K +LE R LSK+KSTY D LP  +N +T RVHT +S A  +TGRLAS EPN
Sbjct: 597 L-ADDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNAKTGRVHTSFSQAVAVTGRLASSEPN 655

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T  G++IR AFI+P    ++SADYSQIELRI+AH++    L Q F    D+HR
Sbjct: 656 LQNIPIRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAEGEDVHR 715

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAEIFG+   +V+ + RR+AK INF +IYG+S   LA  L + R+ AA YI RYF R+
Sbjct: 716 ATAAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSAHGLAKNLGLERAAAAAYIDRYFARY 775

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+  Y+E+T++  R  GYVET++GRR++  EI + ++  R   ERAAINAP+QG+AAD+
Sbjct: 776 PGVAAYMERTRSEARARGYVETVYGRRLYLPEIRASQAGRRQAAERAAINAPMQGTAADL 835

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI--- 956
            ++AMI+  + L D  L ++++LQ+HDELV EVP +E+ T          +A LP +   
Sbjct: 836 IKKAMIATRRWLADAALRSRLVLQVHDELVLEVPRDELETV---------RATLPGLMTG 886

Query: 957 --NLRVPLKVNIKVSNNWQEEN 976
             +L VPL V +    NW E +
Sbjct: 887 IADLSVPLLVEVGHGENWDEAH 908


>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 933

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 356/983 (36%), Positives = 540/983 (54%), Gaps = 62/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+ +Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183
              A  +G +VTI + DKD  QLV P   L +T+   ++D +  VI K+G+ P+++V L 
Sbjct: 116 ALQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   +N+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV ++ DV +      L L + N   L        FT+ +  +           EPV 
Sbjct: 235 RELVTIKIDVTLASGPRALDLREPNTETLAVLYARYGFTQALRELGGALAQSGLLSEPVA 294

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L       +    E    R T   +   ++  D    +++                    
Sbjct: 295 LGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPALSAPG------------------ 333

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----- 418
              +Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++    K      
Sbjct: 334 ---AYETILTQEQLDSWIAQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPF 390

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +F    + +D +                 L+ L     +    K+G + KYD  V+ R
Sbjct: 391 GHNFPGAPVQLDRT---------------HALAQLAPLLTDPAVRKVGQHGKYDLHVMRR 435

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           +G+ + G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS
Sbjct: 436 HGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQIS 495

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQD 593
                 +A E++++ L+L  +L PKL  E  L  VY  ++ P++DV++++E  G+ +D  
Sbjct: 496 LDDATRYAAEDADITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAA 555

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L++ SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T 
Sbjct: 556 ELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTN 615

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              LE I    + + + ILE+R LSK++STY D LP  I+ ++ RVHT Y  A   TGRL
Sbjct: 616 EDALEAI-ADQHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRL 674

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   F +
Sbjct: 675 SSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFAS 734

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI 
Sbjct: 735 GTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIA 794

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+Q
Sbjct: 795 LYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQ 854

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAM+ V   + DH    KM+LQ+HDELVFE   + + T    +   M  A  
Sbjct: 855 GTAADIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMASAA- 913

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL V+  V ++W + +
Sbjct: 914 ---ELRVPLVVDSGVGDDWDQAH 933


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/696 (43%), Positives = 447/696 (64%), Gaps = 19/696 (2%)

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +A   D DA+++EP  ++ +   +     + ++        SQ  S +   ++ +   TP
Sbjct: 1   MAEATDTDASSVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTP 58

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           + L   R  +     I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +
Sbjct: 59  KALAEGRAAQAIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELV 118

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEH 461
             +++    K          ++ L   + + D  G   +  +I     L+ LK+  E+  
Sbjct: 119 GFSLALAPGK--------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDAS 170

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518
            LKI  N+KYD LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K
Sbjct: 171 ILKIAQNMKYDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYK 230

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           ++  S KS++  D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++D
Sbjct: 231 DVAGSGKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVD 290

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME  GI +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+ 
Sbjct: 291 VLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMG 350

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P  +KTKTGQW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+R
Sbjct: 351 LPGASKTKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKR 410

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y++AST TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+L
Sbjct: 411 VHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVL 470

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A I  L Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA
Sbjct: 471 AHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLA 530

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL IPR EA  YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    
Sbjct: 531 NQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQ 590

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R  NERAAINAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+ 
Sbjct: 591 VRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVE 650

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               ++   ME A +P ++L VPL+V+ + ++NW E
Sbjct: 651 KTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNWDE 686


>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 934

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 357/979 (36%), Positives = 541/979 (55%), Gaps = 53/979 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183
                 +G AVTI + DKD  QLV P   L +T+   ++D +  VI K+G+ PE++V L 
Sbjct: 116 ALQGAADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPEQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   +N+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EPV 302
           R LV ++TDV +      L L + N   L        FT+ +  +       A  + EPV
Sbjct: 235 RTLVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPV 294

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L       +    E    R T   +   ++  D    +++                   
Sbjct: 295 ALGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPSLSAP------------------ 333

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++  +       
Sbjct: 334 ---GQYDTILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAA-EPGQAAYL 389

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                F  + V   +          + L+ L     +    K+G + KYD  V+ R+G+ 
Sbjct: 390 PFGHNFPGVPVQLDR---------TQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVE 440

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           + G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS    
Sbjct: 441 LAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDA 500

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L  +L P+L  E  L  VY  ++ P++DV++++E  G+ +D   L++
Sbjct: 501 TRYAAEDADITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRR 560

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
             A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + L
Sbjct: 561 QRADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEAL 620

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E I    + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +
Sbjct: 621 EAI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSD 679

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   FE+  D+
Sbjct: 680 PNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADV 739

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF 
Sbjct: 740 HRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFS 799

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AA
Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAA 859

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAM+ V   + DH    KM+LQ+HDELVFE   + + T    +   M  A      
Sbjct: 860 DIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMAGAA----E 915

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           LRVPL V+  V +NW + +
Sbjct: 916 LRVPLVVDSGVGDNWDQAH 934


>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
 gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
          Length = 956

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 364/985 (36%), Positives = 555/985 (56%), Gaps = 86/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDGSS++YRAF+A P L+    G P  A+ G  +ML KL+++   +    + AV
Sbjct: 42  EKPIILVDGSSYLYRAFHALPPLTTSS-GQPTGAVRGVASMLRKLIKDYDPQ----YMAV 96

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E++ +YK+NRP +P+ L  Q+  +    +A G+P I   G EADD+I T
Sbjct: 97  IFDAKGKTFRDELFEEYKSNRPPMPDDLRAQVQPLHDLIRAMGLPLIIEDGVEADDVIGT 156

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +  I   +G  V I + DKD+ QLV+    L +T+     DIE V +K+G+ PE ++   
Sbjct: 157 FARIFGAQGKPVLISTGDKDMAQLVTEHVTLINTMNNALYDIEGVKQKFGVGPELIIDFL 216

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  L+Q  G+LE+I  N  +I +      K   + + E+ 
Sbjct: 217 ALMGDKVDNIPGVPGVGEKTALGLIQGLGSLEDIYANLDKIAELSFRGAKTMAKKLEEHK 276

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ D  ++  L  L L + +   L  + K LEF   ++ + +  D    
Sbjct: 277 EMAFLSYQLATIKLDCELSEDLNDLKLGEPDNESLARYFKELEFKGWLSEILSGADA--- 333

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                             S ++      N+E  P   F      
Sbjct: 334 ----------------------------------SVVAAAEEAGNNEAAPAAGF------ 353

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 N D+Y  + +   + +W+ KL+  G  +F   T +++  +++ +  A++  D  
Sbjct: 354 ------NRDAYDIVYSEAMLDKWLDKLKAAGEFAFDTETTSLNYMNAELVGFAVAVSD-- 405

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                K   I    +   + D   K      ++   K   E++   KIG N+KYD  VL 
Sbjct: 406 -----KAAYIPFGHNYPGAPDQIDKQL----VIDKFKPLLEDDSLKKIGQNLKYDMSVLA 456

Query: 478 R-YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPI 530
              GI++RG   D ML SYVLDS  + HD+ S+A K+L     S+T  +I       +  
Sbjct: 457 EDAGITLRGVAFDTMLESYVLDSVATRHDMDSLALKYLGRKTISFT--DIAGKGAKQLTF 514

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I   +   +A E+++V L+L   L PKL  E +L  V+  ++ P++ V+S++E  G  
Sbjct: 515 NQIGLHEASPYAAEDADVTLRLHQTLWPKLEAEDRLPEVFRDIELPLVTVLSRIERNGTY 574

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D  LLK  S  ++K +  L+E  +D++G++FNL+SPKQLG+IL+ KL+ P   KT  G 
Sbjct: 575 VDATLLKHQSQFLAKRMAELQEKAFDIAGQEFNLASPKQLGEILYEKLEIPVIKKTPKGA 634

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +TA+ + Q    D P+ + I+++R ++K+K+TY D LP  IN+RT RVHT Y  A T 
Sbjct: 635 -PSTAEAVLQELAHDYPLPQVIMDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAVTA 693

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++++ G+KIR+AF++P  KK+++ DYSQIELRI+AH++    L  
Sbjct: 694 TGRLSSSDPNLQNIPVRSEEGRKIRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKGLTD 753

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            FE  LDIHR  AAE++G  +++VS   RR+AK INF +IYG+S F LA QL +PR EA 
Sbjct: 754 AFEQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAFGLAKQLGLPRKEAQ 813

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +YI  YF R+PG+ +Y+E T+      GYVET++GRR++  EI+S     R   ERAAIN
Sbjct: 814 EYIDLYFERYPGVKKYMEDTRALAIDKGYVETVYGRRLYLPEIHSKNGQRRQGAERAAIN 873

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI ++AMI VH  LE      KM++Q+HDELVFEV ++++    + +   ME
Sbjct: 874 APMQGTAADIIKKAMIKVHDWLETTHFDAKMIMQVHDELVFEVADDQVDDLVKEVKARME 933

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L+VPL V+     NW+E
Sbjct: 934 SAA----ELKVPLIVDAGAGENWEE 954


>gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
          Length = 928

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 362/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKIDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV  +++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
 gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
          Length = 928

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 365/982 (37%), Positives = 556/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                EK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREVEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +       T D +A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TADVEAG 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       + KG           T    Q +S++D+  ++ +              
Sbjct: 295 KW---------LQAKGA---------KTAAKPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S +           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
           [Shigella flexneri 2002017]
 gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671]
 gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71]
 gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304]
          Length = 928

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 365/982 (37%), Positives = 556/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +       T D +  
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TADVEVG 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       + KG           T    Q +S++D+  ++ +              
Sbjct: 295 KW---------LQAKGA---------KTAAKPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S +           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
 gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
          Length = 930

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 365/985 (37%), Positives = 558/985 (56%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 2   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 57  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 117 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 177 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 237 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 287

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T    G+     +  D   KTS   S++  T+  ++   P+         
Sbjct: 288 ------LDGGT----GV-----VTADEQTKTS---SVTVSTAATHAAVIPES-------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ + + + 
Sbjct: 322 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 380 EAAYLPVAHDYLDAPQQLDRDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 430

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 431 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +  +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ I
Sbjct: 491 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEIPLVPVLSRIERTGVMI 548

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G  
Sbjct: 549 DDMLLSAQSQEIALRLDQLEQKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 609 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTAT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   
Sbjct: 668 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +
Sbjct: 728 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINA
Sbjct: 788 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + +E +     K+L+Q+HDELVFEV E  ++     +   ME
Sbjct: 848 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 907

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL       +NW +
Sbjct: 908 SAA----ELAVPLVAEAGHGDNWDQ 928


>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
 gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
 gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
 gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
          Length = 928

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 362/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYGEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D  L SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTRLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE   ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELERKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLSDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
 gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 366/983 (37%), Positives = 545/983 (55%), Gaps = 73/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    E IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASERIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A + G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQSGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL+  G L+ +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLRGIGGLDKLYENLDDIAPLGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A+LS +L  ++ DV +    E L+  + N   LI     L F   +N +    D  + 
Sbjct: 241 ENAQLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLVFKSWLNEL---LDGGSG 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E      NT  +   A+    D DT+  T                             
Sbjct: 298 VVEADEKSANTASSASPAV----DMDTSAVT----------------------------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +T ++ 
Sbjct: 325 -----IDRSQYETILDEASFNAWLEKLKAADVFAFDTETDSLDYMVANLVGLSFAT-EEG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 379 VAAYVPVAHDYLDAPAQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 430 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S++E TG+ ID 
Sbjct: 490 ELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDD 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI++ L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 550 MKLSAQSQEIAQRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGTPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 610 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ D G++IR+AFI+P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 669 LSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQ 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G  I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY+
Sbjct: 729 QGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 789 NKYFERYPGVMQYMEDTRSAAADQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++ + +   K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 849 QGTAADIIKKAMLLVDEWIQAEGQGRVKLLMQVHDELVFEVEESSLAEIESKVQQLMESA 908

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                +L VPL       +NW +
Sbjct: 909 A----DLDVPLVAEAGHGDNWDQ 927


>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
 gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
          Length = 928

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 366/986 (37%), Positives = 557/986 (56%), Gaps = 80/986 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + +        
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGL-------- 371

Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF +E     +I ++ H   D+   + +++E  L  LK   E+E  LK+G N+KYD+
Sbjct: 372 ---SFAIEPGVAAYIPVA-HDYLDAP--DQISRERALELLKPLLEDEKALKVGQNLKYDR 425

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ + 
Sbjct: 426 GILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 485

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGI 588
            ++I+  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G+
Sbjct: 486 FNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGV 545

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G
Sbjct: 546 KIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T
Sbjct: 606 APSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L 
Sbjct: 665 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+   ++  YVET+ GRR++  +I S   + R   ERAAI
Sbjct: 785 QKYMDLYFERYPGVLEYMERTRAQAKEQSYVETLDGRRLYLPDIKSSNGARRAAAERAAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV  +++   ++ I H +
Sbjct: 845 NAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQI-HQL 903

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            + C     L VPL V +    NW +
Sbjct: 904 MENC---TRLDVPLLVEVGSGENWDQ 926


>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
 gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
          Length = 928

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 366/986 (37%), Positives = 558/986 (56%), Gaps = 80/986 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+    L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTSNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + +        
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGL-------- 371

Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF +E     +I ++ H   D+   + +++E  L  LK   E+E  LK+G N+KYD+
Sbjct: 372 ---SFAIEPGVAAYIPVA-HDYLDAP--DQISRERALELLKPLLEDEKALKVGQNLKYDR 425

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ + 
Sbjct: 426 GILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 485

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGI 588
            ++I+  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G+
Sbjct: 486 FNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGV 545

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G
Sbjct: 546 KIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T
Sbjct: 606 APSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L 
Sbjct: 665 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAI
Sbjct: 785 QKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H +
Sbjct: 845 NAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQL 903

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            + C     L VPL V +    NW +
Sbjct: 904 MENC---TRLDVPLLVEVGSGENWDQ 926


>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
 gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
           exonuclease [Shigella flexneri 2a str. 301]
          Length = 928

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 365/982 (37%), Positives = 556/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +       T D +  
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TADVEVG 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       + KG           T    Q +S++D+  ++ +              
Sbjct: 295 KW---------LQAKGA---------KTAAKPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S +           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEHADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886]
 gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886]
          Length = 931

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 364/983 (37%), Positives = 543/983 (55%), Gaps = 71/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A+P L+    G P  A+ G  NML  L+    K+   SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHASPNLTNAK-GEPTGAVYGVVNMLRSLV----KQYPQSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++Y +YKA+RP +P+ L  Q+  +    +A G P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYAEYKAHRPPMPDDLRSQIAPLHEIIEAMGFPMLVIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 K G  + I + DKD+ QLV     L +T+    +  + V  K+G  PE ++   
Sbjct: 121 LAVQGSKAGMPILISTGDKDMAQLVDDNITLINTMTNVIMTPQGVHDKYGFGPEHIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  L+   G L++I  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALIAGIGGLDDIYANLDKIADLGFRGSKTMAKKLEENK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ D  +    E L   + +  +L++    L F + +            
Sbjct: 241 ENAYLSYQLATIKLDCELPFKPEELTNREPDNEKLVALFTELNFKRWLAE---------- 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       +N G  +       T +     S  +   S  N+E   +   ++R Q 
Sbjct: 291 -----------AQNGGAGV-------TALSEKAASGTTATKSAENAEVVFKAAIIDRSQ- 331

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+  +  Q+W++KL+     +F   TD++D   +  + I+ +  +  
Sbjct: 332 ----------YDTILTEEAFQRWMEKLKNADVVAFDTETDSLDYMEANLVGISFAVAEG- 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  E  ++ L+ H   D+  K      +L+ +K + E+   LK+G N+KYD  VL 
Sbjct: 381 -------EAAYLPLA-HDYLDAP-KQLDRDWVLAEMKLWLEDAGALKVGQNLKYDASVLA 431

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I+MRG   D ML SYV +S    HD+ S+A ++L +   + +EI    K  +  ++I
Sbjct: 432 RYDIAMRGIAYDTMLESYVFNSVAGKHDMDSLALRYLQHQCISFEEIAGKGKKQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L  +L   EKL  ++E+ + P++ V+S+ME  G+ I  
Sbjct: 492 ELDQAAPYAAEDADVTLRLHNALMAQLNNDEKLKVIFEQYEMPLVPVLSRMERHGVLISA 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L + S EI+  L +LE+ +++L+GE+FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 552 EMLAKQSQEIAVRLDTLEKEVFELAGEEFNLSSPKQLQAILFEKMGLPVVKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  +   T RVHT Y  A T TGR
Sbjct: 612 NEEVLQELAL-DYPLPKRILEYRGLAKLKSTYTDKLPKMVKPATGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+P  K +++ DYSQIELRI+AH++    L   F 
Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFIAPAGKTILAVDYSQIELRIMAHLSGDEALIDAFR 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAE+ G++I  V+P+MRR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 HGKDIHAATAAEVMGIDISDVTPEMRRRAKAINFGLIYGMSAFGLAKQLGIPRGEAQQYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF R+PG+ +Y+E T+    + GYVETIFGRR+H  EI S  +  R   ERAAINAP+
Sbjct: 791 DRYFERYPGVRQYMENTRLQAAEQGYVETIFGRRLHLPEIKSSNAMRRKGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI V   ++        +++Q+HDELV EV  E +    Q +   ME A
Sbjct: 851 QGTAADIIKRAMILVDAWIQQQPEGRVALIMQVHDELVLEVDTEHLAEVEQQVCKLMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
            L    L VPL  +     NW +
Sbjct: 911 AL----LDVPLVADSGSGANWDQ 929


>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
 gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
          Length = 918

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 374/980 (38%), Positives = 547/980 (55%), Gaps = 75/980 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  AI G  +ML +L  + + E    + A +FD
Sbjct: 4   LLLVDGSSYLYRAFHALPDL-RNSRGEPTGAIRGVLSMLRRLESDYKAE----YRACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YPDYKANRP +P+ L  Q+  +  A QA G P + + G EADD+I T T 
Sbjct: 59  AKGKTFRDDWYPDYKANRPSMPDDLRVQVEPLHAAVQAEGWPLLSVDGVEADDVIGTLTR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G+ V I + DKDL QLV P     +T+ EE +D   V  K+G+PPE++V   AL 
Sbjct: 119 QAVERGWEVVISTGDKDLTQLVRPGVRWVNTMSEEVLDEAGVTAKFGVPPERIVDYLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L EYG L+ ++ +A ++  K   EN+ ++ E   L R+L
Sbjct: 179 GDTVDNVPGVEKCGPKTAVKWLTEYGTLDALVASADKVGGKVG-ENLRKHLEFLPLGRRL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V + TD+P+ + L+ L   D +   L +  +  EF   +  +A     D           
Sbjct: 238 VTVATDIPLPVTLDELPARDDDREALKALYERFEFRSWLQDIA-----DGNRPGRSAPAG 292

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           N       A+ETE                     ++  QT             +   +  
Sbjct: 293 NGLRRNFAAVETE--------------------PVDPPQT-------------EPGAHRV 319

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  +++      WV +LE     +F   T ++D   ++ + ++ + L Q        E 
Sbjct: 320 GYLTLLDWAQFDTWVARLEATPLVAFDTETTSLDPMSARLVGMSFA-LAQG-------EA 371

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            ++ L+ H   D   +  L  E+L+ LK + E++   K+G N+KYD  VL  +GI + G 
Sbjct: 372 AYLPLA-HRGTDVPQQLPL-DEVLARLKPWLESDRHAKLGQNLKYDAHVLLNHGIRLGGI 429

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
             D +L SYVL+S +  HD+ S+A++ L  T     E+       I  D+++      +A
Sbjct: 430 THDTLLESYVLESDKP-HDMDSLAKRHLGLTTIPYTEVCGKGAKQIGFDEVALDCAAAYA 488

Query: 543 IENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V L+L   L P++  + +L  +Y  ++ P + V+ +ME TG+ ID  LL Q   E
Sbjct: 489 AEDADVTLRLHETLWPQVEALPRLAALYRDVELPTLQVLFEMERTGVLIDPFLLAQHGEE 548

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + + LL LE   + L+G+ FNL SPKQLG+ILF KL  P   KT TGQ  T    L Q+ 
Sbjct: 549 LGRRLLGLEAEAHVLAGQPFNLGSPKQLGEILFGKLALPVLKKTATGQPSTDEDVLTQL- 607

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R L+K+KSTYAD LP  +N +T RVHT +S A+ +TGRLAS +PNLQ
Sbjct: 608 AEDYPLPKLLLEHRSLAKLKSTYADKLPRMVNPKTGRVHTCFSQATAVTGRLASTDPNLQ 667

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T  G++IR AFI+P    ++SADYSQIELRI+AH++    L + F    D+HR  
Sbjct: 668 NIPIRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLLEAFAEGEDVHRAT 727

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +VS + RR+AK INF +IYG+S   LA  L I R  A  +I RYF R+PG
Sbjct: 728 AAEVFGVAPSEVSSEQRRYAKVINFGLIYGMSAHGLAKNLGIERGAAQAWIDRYFARYPG 787

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + +Y+E+ K   +  GYVET+FGRR+H  +I + ++  R   ERAAINAP+QG+AAD+ +
Sbjct: 788 VADYMERIKAEAKDKGYVETVFGRRLHLPDIRAQQAGRRQAAERAAINAPMQGTAADLIK 847

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI----- 956
           +AMI+V   L    L ++++LQ+HDELV EVP  E+ T          +A LP +     
Sbjct: 848 KAMIAVSGWLRASGLKSRLVLQVHDELVLEVPVAEVETL---------RAALPGLMGGVA 898

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V + V NNW E +
Sbjct: 899 ALSVPLLVEVGVGNNWDEAH 918


>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
 gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
          Length = 926

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 357/978 (36%), Positives = 545/978 (55%), Gaps = 59/978 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183
              A  +G +VTI + DKD  QLV P   L +T+   ++D +  VI K+G+ P ++V L 
Sbjct: 116 ALQAASDGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPNQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+IDN+PG+   G KTAA  L EY +L+ ++ NA +IK K   EN+        L+
Sbjct: 176 ALMGDAIDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-ENLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV ++TDV +      L L D N   L        F++ +  +       AA ++   
Sbjct: 235 RELVTIKTDVVLASGPRALDLRDPNAEALAVLYARYGFSQALRELGGAA---AAGVQTDA 291

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           + +  TE  G A      R T   +   S+  +    + +                    
Sbjct: 292 MAVARTE-PGRA------RGTGFVSGPASAPVELDPALAAP------------------- 325

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+    +  W+ +L   G  +F   TD++D   +  I ++++        +  
Sbjct: 326 --GQYETILTQAQLDNWIVRLRAAGQFAFDTETDSLDPLQANLIGLSVA--------AEP 375

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +  ++    H    +  +   T + L+ L     +    K+G + KYD  V+ R+G+ +
Sbjct: 376 GQAAYLPFG-HDFPGAPAQLDRT-QALAQLAPLLTDPALRKLGQHGKYDLHVMRRHGVEL 433

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       I   ++S     
Sbjct: 434 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIKFAQVSLEDAT 493

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L PKL  E  L  VY  ++ P+++V++++E  G+ +D   L++ 
Sbjct: 494 RYAAEDADITLRLHQVLGPKLSAEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQ 553

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + LE
Sbjct: 554 SADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALE 613

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            I    + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +P
Sbjct: 614 AI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 672

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   FE+  D+H
Sbjct: 673 NLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVSAFESGADVH 732

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R
Sbjct: 733 RATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 792

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AAD
Sbjct: 793 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 852

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAM+SV   + +H     M+LQ+HDELVFE   + + T    +   M  A      L
Sbjct: 853 IIKRAMVSVDGWIAEHAQRALMILQVHDELVFEADIDFVDTLLSEVTARMATAA----QL 908

Query: 959 RVPLKVNIKVSNNWQEEN 976
           RVPL V+  V +NW E +
Sbjct: 909 RVPLVVDSGVGDNWDEAH 926


>gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14]
          Length = 928

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 362/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P  L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+F + +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFSLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +    NW +
Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926


>gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
          Length = 929

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 368/984 (37%), Positives = 559/984 (56%), Gaps = 75/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHAFPPLTNS-TGEPTGAMYGVLNMLRSLVMQYKP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQLVEAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEKEG +V I + DKD+ QLV+P   L +T+    +  E V++K+G+PPE ++   
Sbjct: 121 LALQAEKEGRSVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVVEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILE-YA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G +++I  N  +I     +  K   N LE + 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGGIDDIFANLDKIAGLSFRGAKTLANKLEPHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV +      L +   +  +L       EF + ++ VA        
Sbjct: 241 DVAYLSYKLATIKTDVELDKTCVALSVAKPDTEKLHQLFSRYEFKRWLSDVANG------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                  D    ++K +A     D  +    S  S+L                       
Sbjct: 295 -------DWLAAKDKKLASTGSDDSASVESESVSSTLP---------------------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                  +D+Y  I++ K   +W++KL+     +F   TD++D   +  + ++ + +   
Sbjct: 326 -------SDNYQTILDQKSFDEWIEKLKRAPVFAFDTETDSLDTLTANLVGMSFA-ITAG 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           D     +   ++       +D+         +L+ LK   E+ + LKIG NIK+D  VL 
Sbjct: 378 DAAYLPLGHDYLGAPEQLDRDA---------VLAALKPLLEDSNLLKIGQNIKFDCGVLV 428

Query: 478 RYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           RYGI ++G   D ML SYVL+S  G   HD+ S+A++ L+Y   T +EI    K+ +  +
Sbjct: 429 RYGIELQGIAYDTMLESYVLNSVAGMGRHDMDSLAERHLNYKTTTFEEIAGKGKNQLTFN 488

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           ++   Q   +A E+++V LQL  ++ P+L  V  L  V+   + P+I V+S+ME  G+ I
Sbjct: 489 QVPVEQAAMYAAEDADVTLQLHQVIWPQLEKVPALEKVFLETEMPLIMVLSRMERAGVLI 548

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           + D+L + S EI+  L  LE+  ++L+GE FNL+SPKQL  ILF KL  P   KT  G  
Sbjct: 549 NSDILAEHSKEIAVRLDELEKEAHELAGEVFNLASPKQLQTILFEKLNLPVVKKTPGGAP 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    + + K ILE R L+K+KSTY D LP  ++  T+RVHT Y  A T T
Sbjct: 609 STNEEVLEEL-VDHHELPKVILEHRGLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAVTAT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AFI+    ++++ADYSQIELRI+AH+++   L + 
Sbjct: 668 GRLSSRDPNLQNIPVRNEEGRRIRQAFIASEGYRIMAADYSQIELRIMAHLSQDQGLLKA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+F V +E+V+ + RR AK INF +IYG+S F L+ QL IPR EA  
Sbjct: 728 FAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQR 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+  Y+E+T+    + GYVET+ GRR++  +I S   + R   ER AINA
Sbjct: 788 YMDLYFERYPGVLAYMERTREQAEEQGYVETLAGRRLYLPDIKSRNGTRRKAAEREAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI ++AMI+V   +       +M++Q+HDELVFEV E E+    Q I   MEK
Sbjct: 848 PMQGTAADIIKKAMIAVDDWIISEAPKVRMIMQVHDELVFEVHESELENTEQKIRELMEK 907

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           + +    L VPL+V++ + +NW +
Sbjct: 908 SVV----LDVPLQVDVGIGDNWDQ 927


>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
 gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
          Length = 930

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 368/987 (37%), Positives = 555/987 (56%), Gaps = 80/987 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFESYKSHRPPMPDDLREQIAPLHEMVEAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LARQASQKGIPVLISTGDKDMAQLVEPNITLINTMTNTILGPQEVEDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+L+ I  +  +I        K     + E  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLKEIYDSLDKIAPLGFRGSKTLAPKMEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV +    E L + + +  +L       EF + +  V      D  
Sbjct: 241 EVAFLSYQLATIKTDVELEKSCEELAISEPDTDKLYQLFSRYEFKRWLADVENGTWMDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + +      + TE K  A+                                         
Sbjct: 301 SGKSSAPAASKTEKKIEAV----------------------------------------- 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++   ++ ++Y  I+   D+ +W++KL +    +F   TD++D   ++ + +        
Sbjct: 320 MAAPTLSAENYQTILEKADLDRWIEKLTSASIFAFDTETDSLDTQEARLVGM-------- 371

Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
              SF +E     ++ L  H   D+  +  L  ++L+ +K   EN+  LKIG N+KYD  
Sbjct: 372 ---SFAIEPGYAAYLPLG-HDYLDAPVQLPLN-DVLAAMKPILENDKILKIGQNLKYDAE 426

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           VL  Y I ++G   D ML SYVL+S  G   HD+ S+A++ L++   + +EI    K  +
Sbjct: 427 VLLNYDIELKGIAFDTMLESYVLNSVAGMGRHDMDSLAERHLNHKTVSFEEIAGKGKKQL 486

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++I+  Q   +A E+++V L L   L P+L  E KL HV+  ++ P++ V+ +ME  G
Sbjct: 487 TFNQIALEQAANYAAEDADVTLLLHQALYPQLEAEPKLNHVFREIEMPLVPVLVRMERKG 546

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  +L   S EI+  L  LE+  ++L+GE+FNL+S KQL  ILF KL+ P   KT +
Sbjct: 547 VLIDAAVLAAQSKEITARLAELEKEAFELAGEEFNLASTKQLQTILFEKLQLPVVKKTPS 606

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   ++ + K +LE R L+K+KSTY D LP  I+ +TQRVHT Y  A 
Sbjct: 607 GAPSTNEEVLEELAL-NHALPKLLLEHRSLAKLKSTYTDKLPLMISTKTQRVHTSYHQAV 665

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++T+ G++IR+AFI+    K+++ADYSQIELRI+AH+++   L
Sbjct: 666 TATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGL 725

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAE+FGV +++V+   RR AK INF +IYG+S F LA QL IPR E
Sbjct: 726 LTAFAEGKDIHRATAAEVFGVPLDEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGE 785

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+PG+  Y+E T++   + GYVET+ GRR++  +I S     R   ER A
Sbjct: 786 AQRYMDLYFERYPGVLRYMENTRHQAAEQGYVETLEGRRLYLADIKSSNGMRRKAAEREA 845

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI ++AMI+V   L+  K    ML+Q+HDELVFEV E E+ + +  I   
Sbjct: 846 INAPMQGTAADIIKKAMIAVDAWLQTEKPHADMLMQVHDELVFEVKESELDSVTTKIREL 905

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ + +NW E
Sbjct: 906 MEQS----MQLDVPLKVDVGIGDNWDE 928


>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
          Length = 929

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 364/983 (37%), Positives = 550/983 (55%), Gaps = 73/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYKP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFDAYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V++K+GIPP  M+   
Sbjct: 121 LALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G ++ I  N  ++        K     + +  
Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKEIYDNLDKVATLTFRGAKTMAARLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L +E+     L++  K  EF + I  +         
Sbjct: 241 EMALLSYQLATIKTDVELELTSDQLTVEEPAVEELLALFKHYEFKRWITDLEDGKWLQGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P       +  K  A++ E             ++++ TS ++S              
Sbjct: 301 KGSP-------STKKKAAVQNE------------PAVAEATSMLSS-------------- 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                   D Y  I++      W++KL+     +F + TD++D   +  I ++ +T    
Sbjct: 328 --------DGYVTILDEDTFTSWLKKLQDSELFAFDLETDSLDTLSANIIGLSFATA-PG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +          ++L+ LK   E+    K+G N+K+D+ VL 
Sbjct: 379 EAAYLPVAHDYLDAPEQLDR---------SDVLARLKPLLEDPQAQKVGQNLKFDRGVLK 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I ++G   D ML SY L+S    HD+ ++A +WL++   T +EI    K+ +  ++I
Sbjct: 430 RYDIELQGIRFDTMLESYALNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL + + P+L  E+   +V+E+++ P++ V+S++E  G+ ID 
Sbjct: 490 ALEQAAHYAAEDADVTLQLHVKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+   L  LE   ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 550 GILATHSQELGSRLAELELKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R L+K+KSTY D LP  IN  + RVHT Y    T TGR
Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGLLSAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIHR  AAE+FGV+++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 729 SEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T+    Q GYV T+ GRR++  +I +  +  R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V + LE       KM++Q+HDELVFEV  + +  A   I   ME +
Sbjct: 849 QGTAADIIKRAMIAVDRWLEQQPSPEVKMIMQVHDELVFEVHADAVEAACAQIRALMEGS 908

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPL+V+I V +NW +
Sbjct: 909 ----MKLDVPLRVDIGVGDNWDQ 927


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 363/973 (37%), Positives = 558/973 (57%), Gaps = 70/973 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  AI GF NML +L    +K+   ++ A IFD
Sbjct: 5   LLLVDGSSYLYRAYHALPDL-RNSAGEPTGAIYGFLNMLRRL----QKDYPTAYRACIFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN++Y +YKANR  +P+ L+ Q   +       G P ++++G EADD+I T   
Sbjct: 60  AKGKTFRNDLYQEYKANRAAMPDDLVEQTGHILELVDMLGWPILQVEGVEADDVIGTLAV 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++GF   + + DKD+ QLV     L +T+  E +D E VIKK+G+PPE++V   +L 
Sbjct: 120 KAHEDGFDTIVSTGDKDMSQLVDDKVTLVNTMNNEVLDREGVIKKFGVPPERIVDYLSLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DN+PG+  +G KTA   L +Y  L+ ++ NA  I      EN+ +  +    + +L
Sbjct: 180 GDTSDNVPGVAKVGPKTAVKWLTQYHTLDGVIENAQNIG-GAVGENLRQSLDWLPQAHEL 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V +RT+    +P +   +E        S LK  E T+ + +    +              
Sbjct: 239 VRIRTNC--ELPDKFASIE-------TSLLKKPENTEGLKKAFERFGF------------ 277

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                K  A E    R  T K +   +L D++                  K S + +N+ 
Sbjct: 278 -----KSWAKELNAARQETPKAAGQIALFDESE----------------DKKSGF-VNDK 315

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  ++  K +++W++K++     +    T ++D  ++K + I++S              
Sbjct: 316 EYETVLTEKQLEKWLEKIDKADLTAIDTETTSLDVMNAKLVGISLSIEPG--------HA 367

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            +I L+ H+ + S  +    + +L  LK + EN    K+G N+KYD  VL  YGI ++G 
Sbjct: 368 AYIPLAHHSMEQS--EQLPLQSVLDKLKPWLENPKKHKVGQNLKYDSHVLANYGIRLQGI 425

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
             D +L SYVL+S R  HD+ S+++++L Y   +  +I     S I  D+I+      +A
Sbjct: 426 VHDTLLESYVLESHRR-HDMDSLSERFLDYKPVSYTDICGKGASQIGFDEIAIDVATHYA 484

Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V LQL   + P+L   + L  +YE+++ P   V+ +ME  G+ ID D L   S E
Sbjct: 485 AEDADVTLQLHQSMWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNVQSRE 544

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +   + SL+EN Y  +G+ FNL+SPKQLG++LF KLK P   KT +G   T+ + LE++ 
Sbjct: 545 LGVKMDSLQENAYVTAGQPFNLNSPKQLGELLFDKLKLPMIKKTPSGAPSTSEEVLEKL- 603

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K IL++R +SK+K+TY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 604 AEDFPLPKIILDYRGMSKLKTTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASNDPNLQ 663

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+++ G++IR AFI+ P  K+ISADYSQIELRI+AH++    L + F +  D+HR  
Sbjct: 664 NIPIRSEEGRRIREAFIASPGNKIISADYSQIELRIMAHLSDDASLLKAFHDGQDVHRAT 723

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+EIF +   +V+   RR+AK INF +IYG+S F +A+ L I R++A +YI RYF R+PG
Sbjct: 724 ASEIFDITPLEVTSDQRRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFERYPG 783

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+++T+   R+ GYVET+FGRR+   EINSP    R   ERAAINAP+QG+AADI +
Sbjct: 784 VARYMDETRQLAREQGYVETVFGRRLWLPEINSPNGPRRQAAERAAINAPMQGTAADIIK 843

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE  KL +K+++Q+HDELV +VPE+E+    + +   M +       L+VP
Sbjct: 844 LSMIAVQDWLEKEKLDSKLIMQVHDELVLDVPEKELVLVREKLPELMAQVA----RLKVP 899

Query: 962 LKVNIKVSNNWQE 974
           L   + V +NW +
Sbjct: 900 LIAEVGVGDNWDQ 912


>gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 933

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 360/983 (36%), Positives = 543/983 (55%), Gaps = 62/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+ +Y DYKANRP + + L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDALYADYKANRPSMADDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183
              A  +G +VTI + DKD  QLV P   L +T+   ++D +  VI K+G+ P+++V L 
Sbjct: 116 ALQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   +N+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV ++TDV +      L L + N   L        FT+ +  +           EPV 
Sbjct: 235 RELVTIKTDVTLASGPRALDLREPNTETLAVLYARYGFTQALRELGGASVQSGLLSEPVA 294

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L       +     TE  R    + + F S             P    +E    LS    
Sbjct: 295 LGAAAATAR-----TEPGR---ARGTGFVS------------GPVNAAVELDPALSA--- 331

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----- 418
              +Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++    K      
Sbjct: 332 -PGAYETILTQEQLDSWIAQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPF 390

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +F    + +D +                 L+ L     +    K+G + KYD  V+ R
Sbjct: 391 GHNFPGAPVQLDRT---------------HALAQLAPLLTDPAVRKVGQHGKYDLHVMRR 435

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           +G+ + G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS
Sbjct: 436 HGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQIS 495

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                 +A E++++ L+L  +L PKL  E  L  VY  ++ P++DV++++E  G+ +D  
Sbjct: 496 LDDATRYAAEDADITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAA 555

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L++ SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T 
Sbjct: 556 ELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTN 615

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE I    + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL
Sbjct: 616 EEALEAI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRL 674

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   F +
Sbjct: 675 SSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFAS 734

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI 
Sbjct: 735 GTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIA 794

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+Q
Sbjct: 795 LYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQ 854

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAM+ V   + DH    KM+LQ+HDELVFE   + + T    +   M  A  
Sbjct: 855 GTAADIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMASAA- 913

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL V+  V ++W + +
Sbjct: 914 ---ELRVPLVVDSGVGDDWDQAH 933


>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
 gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
          Length = 926

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 375/991 (37%), Positives = 552/991 (55%), Gaps = 84/991 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A P L+    G P  A+ G  NM+ +L    +K+   S 
Sbjct: 1   MDTTTPLILVDGSSYLYRAYHALPPLTNSK-GKPTGAVKGVINMMRRL----QKDYPDST 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD    TFR+EIY +YKANRP +P+ L  Q+  +    +A G+P + I G EADD+
Sbjct: 56  HVVVFDAKGKTFRDEIYTEYKANRPPMPDDLREQIAPIHQIIEAMGMPMLIIDGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A      V I + DKD+ QLV+    L +T+    +D   VI+K+GIPPE ++
Sbjct: 116 IGTLAVQATAAKQPVVISTGDKDIAQLVNEHITLINTMNNSTMDRAGVIEKFGIPPELII 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINASRIKQKKRRENI 233
              AL GD  DNIPG+PG+G KTA  LLQ        Y NL+++   A R   K     +
Sbjct: 176 DYLALLGDKSDNIPGVPGVGEKTALGLLQGLGSLDDIYANLDDVAGLAFR-GAKTMLPKL 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           L+  E A LS +L  ++TDV + + L  L   + +   L+S  K +EF   I+   T   
Sbjct: 235 LDNKELAYLSYQLATIKTDVEMPVHLSELKNAEPDKAALLSLFKHMEFKTWIDEGQTNSQ 294

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            ++ N +      +  E  G+ +    D+   +K                          
Sbjct: 295 TNS-NTKAAAASKSPVEQDGL-VAAPADKPAVVK-------------------------- 326

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  ++  +D+  W++K+++    +    T ++D   +K + I++ST
Sbjct: 327 -------------DYQIVLTEQDLATWIEKIKSADLVAVDTETTSLDYMRAKLVGISLST 373

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKY 471
                      E  +I  +     D  G    L  E  L  LK + E+  F K+G N+KY
Sbjct: 374 APG--------EACYIPFA----HDYMGAPEQLQPEFALEKLKPYLEDPAFPKVGQNLKY 421

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK------SR 524
           D  VL ++GIS+RG   D ML SYVLDS  S HD+ S+A   L+Y  +E +K        
Sbjct: 422 DMSVLAQHGISLRGITFDTMLESYVLDSVASRHDMDSLA---LNYLGEETIKFADVAGKG 478

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQM 583
            + +  ++++  Q   +A E++++ L+L   L P++  E  L  V+E ++ P++ V+S++
Sbjct: 479 AAQLTFNQVALDQAGPYAAEDADITLRLHQTLWPRVAAEPTLTKVFEEIELPLVPVLSRI 538

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TG  +D  LL Q S E+S  L  LE   ++L+G++FNL+SPKQLG+ILF KL+ P   
Sbjct: 539 ERTGALVDDTLLFQQSQELSARLGELETEAWELAGQQFNLASPKQLGEILFEKLQIPVLK 598

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT  G   T  + L+++   D P+ K +LE R L+K+KSTY D LP  IN  T R+HT Y
Sbjct: 599 KTAKGAPSTKEEVLQELAL-DYPLPKVLLEHRGLAKLKSTYTDKLPTMINSVTGRIHTSY 657

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
             + T TGRL+S +PNLQNIPI++  G+++R+AF++ P  KL++ADYSQIELRI+AH+++
Sbjct: 658 HQSGTATGRLSSSDPNLQNIPIRSAEGRRVRQAFVAAPGCKLVAADYSQIELRIMAHLSE 717

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F    DIHR  AAE+FGV  E+V+   RR AK INF +IYG+S F LA QL I
Sbjct: 718 DPSLLAAFSAGQDIHRATAAEVFGVENEEVTIDQRRSAKAINFGLIYGMSAFGLARQLGI 777

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R +AA+YI+ YF R+PG+  Y+   ++   + G+VET+FGRR++  EIN+     R   
Sbjct: 778 NRKQAAEYIELYFTRYPGVQNYMNNIRHSAAEQGFVETVFGRRLYLPEINASNGMRRQAA 837

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AINAP+QG+AADI + AMI+VH  LE   L +K+++Q+HDELV EVPE E+    + 
Sbjct: 838 ERTAINAPMQGTAADIIKLAMINVHNWLETSDLTSKIIMQVHDELVLEVPESEMEEVQKG 897

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A      L VPL V+I V +NW E
Sbjct: 898 LNDLMESAA----ELLVPLVVDIGVGDNWDE 924


>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 931

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 367/984 (37%), Positives = 551/984 (55%), Gaps = 73/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    + IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  +   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +         
Sbjct: 241 DNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKLYGQLAFKSWLNELL-------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G  +   ++ D   +TS  S  S   S+IN+              
Sbjct: 293 -------------EGGTGV---VEADEKAQTSVRSGASPVESEINN-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+   Y  I +      W+ KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 323 -AAANIDRSQYQTIFDQATFDIWLDKLKASELFAFDTETDSLDYMVANLVGLSFAVAEG- 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  E  ++ ++ H   D+     L +E +L+ LK   E++   K+G N+KYD  VL
Sbjct: 381 -------EAAYVPVA-HDYLDA--PEQLDREWVLAQLKPLLEDDTKAKVGQNLKYDASVL 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++
Sbjct: 431 ARYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQ 490

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I  ++   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S+ME TG+ ID
Sbjct: 491 IDLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLID 550

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L   S EI+  L  LE+  Y+++G+ FN++SPKQL  ILF ++  P   KT +G   
Sbjct: 551 DMKLSAQSQEIAVRLGELEQKAYEIAGQPFNMNSPKQLQTILFEQMGLPVIKKTPSGTPS 610

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+++   D P+   I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TG
Sbjct: 611 TAEEVLQELAL-DYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATG 669

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F
Sbjct: 670 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +   DIH   AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA  Y
Sbjct: 730 QQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAY 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           + +YF R+PG+ +Y+E T++   Q+GYVETIFGRR+H  EI S     R   ERAAINAP
Sbjct: 790 MDKYFERYPGVMQYMEDTRSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAP 849

Query: 892 IQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  +T     +   ME 
Sbjct: 850 MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESCLTEIESKVQQLMES 909

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L VPL       +NW +
Sbjct: 910 AA----QLNVPLVAEAGHGDNWDQ 929


>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
 gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
          Length = 927

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 358/978 (36%), Positives = 540/978 (55%), Gaps = 58/978 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQ 183
                 +G AVTI + DKD  QLV P   L +T+   ++D  E VI K+G+ P ++V L 
Sbjct: 116 ALQGASDGLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   EN+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-ENLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV ++TDV +      L L + N   L        FT+ +  +            P+ 
Sbjct: 235 RELVTIKTDVVLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAEAGGLTAPMA 294

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           +             TE  R    + + F S             P    +E    LS    
Sbjct: 295 V-----------ARTEPGR---ARGTGFVS------------APAAAPVELGPALSA--- 325

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+    +  W+ +L   G  +F   TD++DA  +  I ++++        +  
Sbjct: 326 -PGQYETILTQAQLDSWIARLRAAGQFAFDTETDSLDALQANLIGLSVA--------AEP 376

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +  ++    H    +  +   T + L+ L     +    K+G + KYD  V+ R+GI++
Sbjct: 377 GQAAYLPFG-HDFPGAPAQLDRT-QALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGIAL 434

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL+SG + HD+ S+A+++L Y     ++I       I   ++S     
Sbjct: 435 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDICGKGAKQIKFAQVSLEDAT 494

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L  +L  E  L  VY  ++ P++ V+ ++E  G+ +D   L++ 
Sbjct: 495 RYAAEDADITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQ 554

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + LE
Sbjct: 555 SADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALE 614

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            I    + + + IL++R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +P
Sbjct: 615 AI-ADQHELPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 673

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+H
Sbjct: 674 NLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 733

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R
Sbjct: 734 RATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 793

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AAD
Sbjct: 794 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 853

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAM+SV   + DH     M+LQ+HDELVFE   + + T    +   M  A     +L
Sbjct: 854 IIKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVTARMSAAA----SL 909

Query: 959 RVPLKVNIKVSNNWQEEN 976
           RVPL V+  V +NW E +
Sbjct: 910 RVPLVVDSGVGDNWDEAH 927


>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
 gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
          Length = 934

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 373/986 (37%), Positives = 542/986 (54%), Gaps = 74/986 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+         SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYSP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV P   L +T+    +  E V  K+G+PP  ++   
Sbjct: 121 LAREASSKGMPVLISTGDKDMAQLVEPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+LE I  +   I        K     + E  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLEAIYNDLEAIAPLGFRGSKTLAPKMAENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV +  P E L + + +  +L       EF + +  V      DA 
Sbjct: 241 ELAFLSYQLATIKTDVELEKPCEELKVSELDADKLHQLFSRYEFKRWLVDVENGSWMDAK 300

Query: 298 NIEP--VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             +P        T ENK  A                           S+ T   L  E  
Sbjct: 301 GAKPSKAAESYRTPENKPAA--------------------------KSKPTAPTLSAE-- 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  I++  ++  WV+KL      +F   TD++D   ++ + ++ + ++
Sbjct: 333 -----------NYQTILDKAELALWVKKLSEASLFAFDTETDSLDTQEARLVGMSFA-IE 380

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                   +   ++D  V  S D         ++++ +K   ENE   KIG N+KYD  V
Sbjct: 381 AGHAAYLPIGHDYLDAPVQLSLD---------DVIAVMKPILENEKIGKIGQNLKYDAEV 431

Query: 476 LHRYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           L  YGI ++G   D ML SYVL+S  G   HD+ S+A + L++   + +EI    K  + 
Sbjct: 432 LENYGIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLT 491

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588
            ++I   Q   +A E+++V L L   L P+L  E KL HV++ ++ P++ V+ +ME  G+
Sbjct: 492 FNQIPLEQAANYAAEDADVTLLLHQALFPQLEEEPKLAHVFQNIEMPLVPVLVRMERKGV 551

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID   L   S  I+  L  LE+  ++L+GE+FNL+SPKQL  ILF KL+ P   KT +G
Sbjct: 552 LIDAPTLAAQSKIITARLAELEKQAFELAGEEFNLASPKQLQTILFEKLQLPVIKKTPSG 611

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + LE++   ++ + K +LE R L+K+KSTY D LP  IN +T RVHT Y  A T
Sbjct: 612 AASTNEEVLEELAL-NHELPKLLLEHRSLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 670

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T+ G++IR+AFI+    K+++ADYSQIELRI+AH+++   L 
Sbjct: 671 ATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVMAADYSQIELRIMAHLSQDKGLL 730

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH+  AAE+FGV +++V+   RR AK INF +IYG+S F LA QL IPR EA
Sbjct: 731 TAFAEGKDIHKATAAEVFGVPLDQVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 790

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+  Y+E T+    + GYVET+ GRR++  +I S     R   ER AI
Sbjct: 791 QRYMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLADIKSSNGMRRKAAEREAI 850

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI ++AMI+V   L+  K    ML+Q+HDELVFEV E E+      +   M
Sbjct: 851 NAPMQGTAADIIKKAMIAVDHWLQTEKPEADMLMQVHDELVFEVKESELEKVQAKVQELM 910

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E++    + L VPLKV + V  NW E
Sbjct: 911 EQS----MKLDVPLKVEVGVGMNWDE 932


>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
 gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
          Length = 957

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 365/983 (37%), Positives = 548/983 (55%), Gaps = 71/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    + IA    V
Sbjct: 32  ENPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 86

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I+G EADD+I T
Sbjct: 87  VFDAKGKTFRDDMYPEYKANRPPMPDELRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGT 146

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 147 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYL 206

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  +   I        K   + +++  
Sbjct: 207 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSKTMAKKLVDNK 266

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +         
Sbjct: 267 DNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKLYGQLAFKSWLNELL-------- 318

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G  +   ++ D   +TS  S  S   S+IN+              
Sbjct: 319 -------------EGGTGV---VEADEKAQTSVRSGASPVESEINN-------------- 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+   Y  I +      W+ KL+     +F   TD++D   +  + ++ + + + 
Sbjct: 349 -AAANIDRSQYQTIFDQATFDIWLDKLKASELFAFDTETDSLDYMVANLVGLSFA-VAEG 406

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L+ LK   E++   K+G N+KYD  VL 
Sbjct: 407 EAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPLLEDDTKAKVGQNLKYDASVLA 457

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 458 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQI 517

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             ++   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 518 DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDD 577

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++G+ FN++SPKQL  ILF ++  P   KT +G   T
Sbjct: 578 MKLSAQSQEIAVRLGELEQKAYEIAGQPFNMNSPKQLQTILFEQMGLPVIKKTPSGTPST 637

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+   I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 638 AEEVLQELAL-DYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGR 696

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 697 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQ 756

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 757 QGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQTYM 816

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q+GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 817 DKYFERYPGVMQYMEDTRSNASQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPM 876

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  +T     +   ME A
Sbjct: 877 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESCLTEIESKVQQLMESA 936

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL       +NW +
Sbjct: 937 A----QLNVPLVAEAGHGDNWDQ 955


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 366/983 (37%), Positives = 554/983 (56%), Gaps = 74/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL         SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLAQYNP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G +V I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LALEAEKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPEEVEQKYGVPPALIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           A+ GDS DNIPG+PG+G KTA  LLQ  G+++ I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADLGFRGAKTMATKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +P E L + + +   L +     EF + ++ +         
Sbjct: 241 DVAFLSYQLATIKTDVELALPCEELNVTEPDVEALQTLFSRYEFKRWLSDL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G  ++++ +      T    +LSD+ + +             ++ 
Sbjct: 292 -------------QDGKWLQSKKN-----NTQAQKALSDEPAVV-------------VET 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S  P  ++ Y  I++ +    W++KL+     +F + TD +D   +  + I+ + +   
Sbjct: 321 SSVLP--SEGYVTILDQEHFDSWLEKLKNSEVFAFDLETDALDTLSANIVGISFA-VAPG 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      + +         +L+ LK   E+E+  K+G N+KYD+ VL 
Sbjct: 378 EAAYLPVAHDYLDAPDQLDRAA---------VLAQLKPLLEDENAWKVGQNLKYDRGVLK 428

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            Y I + G + D ML SY+L+S    HD+ S+A +WL++   T +EI    K+ +  ++I
Sbjct: 429 NYDIELAGIKFDAMLESYILNSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L  E     V+E+++ P++ V+S++E  G+ IDQ
Sbjct: 489 ALEQAAHYAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLTVISRIERNGVLIDQ 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q S E++  L  LE   ++L+GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 SILAQHSKELTARLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AF++    ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSADPNLQNIPVRNDEGRRIRQAFVAAKGHRIVAADYSQIELRIMAHLSQDKGLLDAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FGV ++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 728 QGEDIHRATASEVFGVALDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E T+     NGYVET+ GRR+   +I S  +  R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLRYMENTRQLAASNGYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V + LE     A +M++Q+HDELVFEV  E +  ASQ I   ME +
Sbjct: 848 QGTAADIIKRAMIAVDEWLEQQNDNAVRMIMQVHDELVFEVKAEAVEEASQKIRALMEGS 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPL V + V NNW E
Sbjct: 908 ----VQLDVPLLVEVGVGNNWDE 926


>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
          Length = 927

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 358/978 (36%), Positives = 540/978 (55%), Gaps = 58/978 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T 
Sbjct: 56  VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQ 183
                 +G AVTI + DKD  QLV P   L +T+   ++D  E VI K+G+ P ++V L 
Sbjct: 116 ALQGASDGLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK K   EN+        L+
Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-ENLRAALPRLPLN 234

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV ++TDV +      L L + N   L        FT+ +  +            P+ 
Sbjct: 235 RELVTIKTDVVLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAEAGGLTAPMA 294

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           +             TE  R    + + F S             P    +E    LS    
Sbjct: 295 V-----------ARTEPGR---ARGTGFVS------------APAAAPVELDPALSA--- 325

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+    +  W+ +L   G  +F   TD++DA  +  I ++++        +  
Sbjct: 326 -PGQYETILTQAQLDSWIARLRAAGQFAFDTETDSLDALQANLIGLSVA--------AEP 376

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +  ++    H    +  +   T + L+ L     +    K+G + KYD  V+ R+GI++
Sbjct: 377 GQAAYLPFG-HDFPGAPAQLDRT-QALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGIAL 434

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL+SG + HD+ S+A+++L Y     ++I       I   ++S     
Sbjct: 435 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDICGKGAKQIKFAQVSLEDAT 494

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L  +L  E  L  VY  ++ P++ V+ ++E  G+ +D   L++ 
Sbjct: 495 RYAAEDADITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQ 554

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + LE
Sbjct: 555 SADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALE 614

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            I    + + + IL++R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +P
Sbjct: 615 AI-ADQHELPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 673

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+H
Sbjct: 674 NLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 733

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R
Sbjct: 734 RATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 793

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AAD
Sbjct: 794 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 853

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAM+SV   + DH     M+LQ+HDELVFE   + + T    +   M  A     +L
Sbjct: 854 IIKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVTARMSAAA----SL 909

Query: 959 RVPLKVNIKVSNNWQEEN 976
           RVPL V+  V +NW E +
Sbjct: 910 RVPLVVDSGVGDNWDEAH 927


>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
 gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
          Length = 930

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 373/987 (37%), Positives = 559/987 (56%), Gaps = 80/987 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LACEASRKGMPVLISTGDKDMAQLVEPNITLINTMNNTILGPDEVKEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+LE I  +   I        K     + E  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLEAIYNDLEAIAPLGFRGSKTLAPKMAENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV +    E L +   +  +L       EF + +           A
Sbjct: 241 DVAFLSYQLATIKTDVELEKTCEELQVAQPDVDKLHQLFSRYEFKRWL-----------A 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E      N T  +G        + ++ K S   + S    K ++   P          
Sbjct: 290 DVE------NGTWMEG--------KGSSAKPSPTPAAS--PVKPSNPTVPT--------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                +  ++Y  I+   D+++WV+KL      +F   TD++D   ++ + +        
Sbjct: 325 -----LCAENYQTILEKADLERWVEKLSKASLFAFDTETDSLDTQEARLVGM-------- 371

Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
              SF +E     ++ L  H   D+  +  L +E+L  +K   E+E+ LKIG N+KYD  
Sbjct: 372 ---SFAIEPGHAAYLPLG-HDYLDAPVQLPL-EEVLELMKPILESENILKIGQNLKYDAE 426

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           VL  Y I ++G   D ML SYVL+S  G   HD+ S+A + L++   + +EI    K  +
Sbjct: 427 VLENYDIELKGIGYDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQL 486

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++I+  +   +A E+++V L L   L P+L  E KL H+++ ++ P++ V+ +ME  G
Sbjct: 487 TFNQIALEEAANYAAEDADVTLLLHQALYPQLEAEPKLNHIFQNIEMPLVPVLVRMERKG 546

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID ++L   S  I+  L  LE+  ++L+GE+FNL+SPKQL  ILF KL+ P   KT +
Sbjct: 547 VLIDANVLAAQSKVITARLAELEKEAFELAGEEFNLASPKQLQTILFEKLQLPVIKKTPS 606

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   ++ + K +LE R L+K+KSTY D LP  IN RTQRVHT Y  A 
Sbjct: 607 GAASTNEEVLEELAL-NHALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAV 665

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++T+ G++IR+AFI+    K+++ADYSQIELRI+AH+++   L
Sbjct: 666 TATGRLSSRDPNLQNIPVRTEEGRRIRQAFIAREGYKVMAADYSQIELRIMAHLSQDKGL 725

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH+  AAE+FGV +E+V+   RR AK INF +IYG+S F LA QL IPR E
Sbjct: 726 LTAFAEGKDIHKATAAEVFGVPLEQVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGE 785

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+PG+  Y+E T+    + GYVET+ GRR++  +I S     R   ER A
Sbjct: 786 AQRYMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLADIKSSNGMRRKAAEREA 845

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI ++AMI+V   L+  K    ML+Q+HDELVFEV E E+      +   
Sbjct: 846 INAPMQGTAADIIKKAMIAVDNWLQTEKPHADMLMQVHDELVFEVKESELERVQAQVQSL 905

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ + +NW E
Sbjct: 906 MEQS----MKLDVPLKVDVGIGDNWDE 928


>gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895]
 gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895]
          Length = 928

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 364/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEY-A 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I     +  K     LE   
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELSCDQLEVQQPAAEELLGLFKKYEFKRWTTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q S + D+T  + +              
Sbjct: 301 GAKPAA------------------------KPQESIVIDETPDVPATA------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D+Y  I++ + ++ W++ L+     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----LSYDNYVTILDEETLESWIETLKKAPVFAFDTETDSLDNHAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISRERA---------LELLKPLLEDEKARKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQYKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    + SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPQDYVIASADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLESVTAEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKERGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V K L+D +   +M++Q+HDELVFEV ++++   S+ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDKWLQDEQPRVRMIMQVHDELVFEVHKDDLDVVSKKI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 942

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 372/991 (37%), Positives = 577/991 (58%), Gaps = 73/991 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++ L LVDGSS++YRAF+A P L R   G P  AI G  NM+    + +R E  A H A 
Sbjct: 3   KHRLLLVDGSSYLYRAFHAMPDL-RNGAGEPTGAIYGMVNMM----RRTRSELKADHIAC 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YKA+R  +PE L+ Q+  +    +A G P + + G EADD+I T
Sbjct: 58  VFDAKGKTFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKALGWPVLMVGGVEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G+   I + DKDL QLV+ +  L +T+  EK+DIE V +K+G+PPE +V   
Sbjct: 118 LACQATQAGWETIISTDDKDLAQLVNSSVTLINTMTNEKLDIEGVKEKFGVPPELIVDYL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           ++ GD++DN+PG+P  G KTA   L E+G+L+N++ NA ++K     EN+    +    +
Sbjct: 178 SIIGDAVDNVPGVPKAGPKTANKWLAEFGSLDNLMANADQVK-GVVGENLRASLDWLPQA 236

Query: 244 RKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVAT--TYDCDAAN 298
            +L+ ++TD  ++  +P L+ L  +  + P L    +   F   +  V    T   D A+
Sbjct: 237 HQLITVKTDCDLSPHLPGLDDLHAKSEDAPLLRELFERYAFKTWLRDVEKQLTSPADKAS 296

Query: 299 IEPVVLDIN----TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            E V  D+     T   +G     E  +   I ++   +LS +T   +S+ T     +ER
Sbjct: 297 -EVVTFDLAGSPLTPSERGF---DEEKKTRVIVSAPTKNLSQETR--DSQDT-----IER 345

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y  IV+   +++W++K+E+    +    T ++DAF ++ + I++S  
Sbjct: 346 ------------RYECIVDIVGLEKWLKKIESSQLTAVDTETTSLDAFAAELVGISLSVK 393

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
                     E  +I ++        G+  L ++ +L+ +K + E+   LK+G N+KYD 
Sbjct: 394 PG--------EACYIPVA-----HRNGEAQLDRDLVLARMKSWLESATHLKVGQNLKYDS 440

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
            +   YGI+++G   D +L SYVL+S    H++ S+A++ L       +E+       I 
Sbjct: 441 HIFANYGITLKGVVFDTLLESYVLES-HLPHNMDSLAERHLGMKTIRYEEVCGKGVHQIG 499

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588
            D++      ++A E++++ L+L L L P++     LL+VYE+++ P + V+  ME  GI
Sbjct: 500 FDQVDLKIATDYAAEDADITLRLHLELWPQIQESPGLLYVYEKVEMPAMRVLGIMERNGI 559

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID  LL +   ++ K LL LE  I+ L+G+ FN+ SPKQ+ +ILF +L+ P   KT +G
Sbjct: 560 RIDSALLAKQGQQVGKRLLELEGEIHKLAGQPFNIQSPKQIAEILFGQLELPVIKKTPSG 619

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L+++   D P+   IL++R L+K+ STY + LP   + +T RVHT +S A+ 
Sbjct: 620 APSTDEEVLQKL-AEDYPLPARILDYRSLAKLMSTYIEKLPRMADPKTGRVHTNFSQATA 678

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS +PNLQNIP++T+ G++IR AFI     KL+SADYSQIELRI+AHIA+   L 
Sbjct: 679 VTGRLASSDPNLQNIPVRTEEGRRIREAFIPAEGCKLLSADYSQIELRIMAHIAEDENLL 738

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F +  D+H+  AAEIFGV ++ VS + RR+AK INF +IYG+S F LA  L I  S A
Sbjct: 739 TAFRDGKDVHQATAAEIFGVPLDDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIECSAA 798

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +YI +YF R+PG+ +Y+E+T+   R+NGYVET+FGRR+   EI       R   ERAAI
Sbjct: 799 QNYIAKYFDRYPGVAQYMERTRLEARENGYVETVFGRRLWSPEIKGSNGPRRQGAERAAI 858

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AAD+ + AMI+V    E  +L TKMLLQ+HDELVF+VP +EI          +
Sbjct: 859 NAPMQGTAADLIKLAMIAVEDWFEKEQLKTKMLLQVHDELVFDVPLDEI---------EL 909

Query: 949 EKACLPKI-----NLRVPLKVNIKVSNNWQE 974
            +A LP +      L+VPL V+I + +NW+E
Sbjct: 910 LQAKLPNLMCHVAQLKVPLAVSIGIGDNWEE 940


>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891]
 gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891]
          Length = 931

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 363/983 (36%), Positives = 546/983 (55%), Gaps = 71/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    + IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L+ +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLDKLYENLDDIAPLGFRGSKTMAKKLIDNQ 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++ DV +    E L+  + N   LI     L F   +N +      D  
Sbjct: 241 DNAKLSYELATIKLDVALEETPESLLKAEPNKDELIKLYGQLVFKSWLNEL-----LDGG 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N              G+ +E +         S+ SS ++  +                  
Sbjct: 296 N--------------GV-VEADEKSGGAAGASKASSGAEMDT------------------ 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +T ++ 
Sbjct: 323 -SAVTIDRSHYDTILDEASFNAWLEKLKAAEVFAFDTETDSLDYMVANLVGLSFAT-EEG 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 381 VAAYVPVAHDYLDAPAQLERDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 432 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S++E TG+ ID 
Sbjct: 492 ELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI++ L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 552 MKLGAQSQEIAQRLDELEQQAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+P   K+++ DYSQIELRI+AH++    L + F+
Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLEAFQ 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G  I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY+
Sbjct: 731 QGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + GYVETI+GRR+H  EI S     R   ERAAINAP+
Sbjct: 791 NKYFERYPGVMQYMEDTRSTASEQGYVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  +T     +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDEWIQTEGDGRVKLLMQVHDELVFEVQESALTEIESKVQELMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL       +NW +
Sbjct: 911 A----ELDVPLVAEAGHGDNWDQ 929


>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
 gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
          Length = 931

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 365/983 (37%), Positives = 548/983 (55%), Gaps = 71/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    + IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  +   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +         
Sbjct: 241 DNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKLYGQLAFKSWLNELL-------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G  +   ++ D   +TS  S  S   S+IN+              
Sbjct: 293 -------------EGGTGV---VEADEKAQTSVRSGASPVESEINN-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+   Y  I +      W+ KL+     +F   TD++D   +  + ++ + + + 
Sbjct: 323 -AAANIDRSQYQTIFDQATFDIWLDKLKASELFAFDTETDSLDYMVANLVGLSFA-VAEG 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L+ LK   E++   K+G N+KYD  VL 
Sbjct: 381 EAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPLLEDDTKAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 432 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             ++   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 492 DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++G+ FN++SPKQL  ILF ++  P   KT +G   T
Sbjct: 552 MKLSAQSQEIAVRLGELEQKAYEIAGQPFNMNSPKQLQTILFEQMGLPVIKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+   I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 612 AEEVLQELAL-DYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQ 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 QGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q+GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 791 DKYFERYPGVMQYMEDTRSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  +T     +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESCLTEIESKVQQLMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL       +NW +
Sbjct: 911 A----QLNVPLVAEAGHGDNWDQ 929


>gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
          Length = 929

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 362/983 (36%), Positives = 546/983 (55%), Gaps = 73/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYKP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFDAYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V++K+GIPP  M+   
Sbjct: 121 LALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G ++ I  N  ++        K     + +  
Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKEIYDNLDKVATLTFRGAKTMAARLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +  + L +E+     L++  K  EF + I  +         
Sbjct: 241 EMALLSYKLATIKTDVELELTSDQLTVEEPAVEELLALFKHYEFKRWITDLEDGKWLQGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P    +   +N+                    ++++ TS ++S              
Sbjct: 301 KGSPSTKKVAAVQNE-------------------PAVAEATSVLSS-------------- 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                   D Y  I++      W++KL+     +F + TD++D   +  I ++ +T    
Sbjct: 328 --------DGYVTILDEDTFTSWLKKLQDSELFAFDLETDSLDTLSANIIGLSFATA-PG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +          ++L+ LK   E+    K+G N+K+D+ VL 
Sbjct: 379 EAAYLPVAHDYLDAPEQLDR---------SDVLARLKPLLEDPQAQKVGQNLKFDRGVLK 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I ++G   D ML SY L+S    HD+ ++A +WL++   T +EI    K+ +  ++I
Sbjct: 430 RYDIELQGIRFDTMLESYALNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL + + P+L  E+   +V+E ++ P++ V+S++E  G+ I  
Sbjct: 490 ALEQAAHYAAEDADVTLQLHVKMWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+   L  LE   ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 550 GILATHSQELGSRLAELELKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R L+K+KSTY D LP  IN  + RVHT Y    T TGR
Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGLLSAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIHR  AAE+FGV+++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 729 SEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T+    Q GYV T+ GRR++  +I +  +  R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V + LE       KM++Q+HDELVFEV  + +  A   I   ME +
Sbjct: 849 QGTAADIIKRAMIAVDRWLEQQPSPEVKMIMQVHDELVFEVHADAVEAACAQIRALMEGS 908

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPL+V+I V +NW +
Sbjct: 909 ----MKLDVPLRVDIGVGDNWDQ 927


>gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
          Length = 930

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 370/983 (37%), Positives = 547/983 (55%), Gaps = 72/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIIQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVEAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE  G  V I + DKD+ QLV+P   L +T+    +  + V  K+G+PP  ++   
Sbjct: 121 LARRAELAGRHVLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVCDKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G+L+ I  +  R+        K     +L   
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGIGSLKTIYDDLDRVATLSFRGAKTMGAKLLLNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS  L  ++TDV +    + L ++  +   L       EF + ++ V         
Sbjct: 241 EKADLSYLLATIKTDVDLAQGGDDLAIKVLDSETLHQLFSRYEFKRWLSDV--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                   ++ +  T        + +KI    TP  L  E    
Sbjct: 292 ------------------------QEGSWLTGATGGRKTRGNKIAD--TPAALAPEVFVT 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           L++     + Y  I++   ++  + +L   GS +F   TD++D   +    + IS  D+ 
Sbjct: 326 LTR-----EGYQTILDEAALEALITRLRQAGSFAFDTETDSLDVLSAN--LVGISCADKP 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  +  +I L+ H   D+   + L ++ +L+ L+   E+E   KIG N+KYD  V+
Sbjct: 379 G------QACYIPLA-HDYLDA--PHQLDRQYVLARLQPLLEDEGIAKIGQNLKYDIGVM 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            RYGI++RG   D ML SYVL+S    HD+ S++ + L +   T +EI    K  +  ++
Sbjct: 430 ARYGITLRGVAFDTMLESYVLNSVAGRHDMDSLSARHLDHKTITFEEIAGKGKGQLTFNQ 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQID 591
           I   Q  E+A E+++V LQL   L P L  E    H++  +D P++ V+S+ME TG+ ID
Sbjct: 490 IPLEQASEYAAEDADVTLQLHQHLWPMLEGESGPSHIFRDIDMPLVPVLSRMERTGVLID 549

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L Q S E++  L +LE+  +  +GE FNLSS KQL  ILF K + P   KT  G   
Sbjct: 550 SAILGQHSQELAVRLEALEQQAHSEAGEPFNLSSTKQLQSILFEKQQLPVLKKTPGGAPS 609

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++      + + ILE+R L+K+KSTY D LP  +N  T RVHT Y  A T TG
Sbjct: 610 TNEEVLVELAEQGYALPQVILEYRTLAKLKSTYTDKLPLMVNPLTGRVHTSYHQAVTATG 669

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP+++D G++IR+AFI+P   ++++ADYSQIELRI+AH++    L Q F
Sbjct: 670 RLSSSDPNLQNIPVRSDEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHLSGDKGLLQAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAE+FG+ +E VS   RR AK INF +IYG+S F LA QL I R EA  Y
Sbjct: 730 AAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRY 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+  Y+E+T+      GYVET+ GRR++  EIN+     R   ERAAINAP
Sbjct: 790 MDLYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYLPEINARNGMRRKAAERAAINAP 849

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI+V   L++ +L  +M++Q+HDELVFEVPE ++      +   ME +
Sbjct: 850 MQGTAADIIKRAMIAVDGWLQETQLEVRMIMQVHDELVFEVPESQVEAVVCQVRVLMENS 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               ++L VPLKV+I    NW +
Sbjct: 910 ----LSLAVPLKVDIGCGENWDQ 928


>gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316]
          Length = 930

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 365/982 (37%), Positives = 552/982 (56%), Gaps = 70/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMATKLQDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L +++     L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLHVQEPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     IA++ E   D    T  F                          
Sbjct: 301 GSKPAAKVKET-----IAVDAEEPEDEEAVTLSF-------------------------- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                   + Y  I++   + +W++KL+     +F   TD++D   +  + ++ +T    
Sbjct: 330 --------EHYETILDESQLVEWIEKLKKAPVFAFDTETDSLDNISANMVGLSFATAPGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  +K   E++  LK+G N+K+D+ +L 
Sbjct: 382 A-AYVPVAHDYLDAPDQIPRD---------RVLELMKPVLEDDKALKVGQNLKFDRGILQ 431

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+LDS    HD+ S++ +WL +   T +EI    K+ +  ++I
Sbjct: 432 NYGIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L+V++ ++ P++ V+S++E  G++ID 
Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDP 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+++ L  LE+  ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 552 TVLHNHSGELAQRLTELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K IL++R L+K+KSTY D LP  IN +T RVHT Y  A   TGR
Sbjct: 612 SEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 731 EGQDIHRATAAEVFGLPLESVTNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDIKSSNAARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   LE  K   KM++Q+HDELVFEV ++++   S+ I   ME + 
Sbjct: 851 QGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLEAVSRKIHELMENS- 909

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L VPL V +    NW +
Sbjct: 910 ---MTLDVPLLVEVGSGENWDQ 928


>gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501]
 gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501]
          Length = 931

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 367/985 (37%), Positives = 540/985 (54%), Gaps = 91/985 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    R++   S FAV+FD
Sbjct: 23  LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RRQYPDSPFAVVFD 77

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ ++ +YK++RP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 78  AKGPTFRDALFENYKSHRPPMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 137

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
                G  V I + DKD+ QLV P   L +T+     DIE V  K+G+ PE ++   AL 
Sbjct: 138 QCAALGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDIEGVKAKFGVGPELIIDFLALM 197

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIK------QKKRRENILEYAET 239
           GD +DNIPG+PG+G KTA  LL    G L+ +  +  ++        K     + E+ + 
Sbjct: 198 GDKVDNIPGVPGVGEKTACGLLNGIPGGLKGLYEHLDQVAGLPIRGAKSLGAKLEEHRDA 257

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S +L  ++ DV + + +  L+  + +   LI+  + LEF + ++ +         N 
Sbjct: 258 AFMSYELATIKIDVALDVEVGDLMPGEPHREALIALYRELEFKQWLDELLREAKAAGENC 317

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E         + +G +I+ E         +Q+ +L +Q                      
Sbjct: 318 E--------VQPEGCSIQAE---------AQYETLLEQA--------------------- 339

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                           D ++W+ +L+     +F   T ++DA  ++ + +          
Sbjct: 340 ----------------DFERWLARLKAAECFAFDTETTSLDAQRAELVGV---------- 373

Query: 420 TSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            SF VE     ++ L  H+      +  L   +LS LK   E+    KI  + KYD  VL
Sbjct: 374 -SFAVEPGQAAYVPLR-HSYMGVPQQLELDA-VLSALKPLLEDPAKTKICQHGKYDMNVL 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
             YGI MRG   D ML SYVLD+  + HD+ S+A K+L       ++I       +  D+
Sbjct: 431 MHYGIEMRGMAFDTMLESYVLDATATRHDMDSLALKYLGRGTIRFEDIAGKGAKQLTFDQ 490

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I+  Q   +A E+++V L+L   L  KL     LL V   ++ P++ V++++E  G  +D
Sbjct: 491 IAIEQAGPYAAEDADVTLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVD 550

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LL Q S E+   L+ LE   +D++GE+FNL SPKQL  IL+ KL  P  +KT  GQ  
Sbjct: 551 AQLLGQQSVELGDKLVQLEREAFDIAGEEFNLGSPKQLCAILYDKLGCPVISKTAGGQPS 610

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    L ++   D P+ K I++ R LSK+K TY D LP  IN RT R+HT Y  A T TG
Sbjct: 611 TAESVLAELAEQDYPLPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATG 670

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+T  G++IR+AF++ P  KL++ADYSQIELRI+AH+A+   L   F
Sbjct: 671 RLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAF 730

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +N LD+HR  AAE+FGV +E+VS   RR AK INF +IYG+S F LA Q+ + R EA +Y
Sbjct: 731 QNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDVGRKEAQEY 790

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF R+PG+  Y+E+T+    + GYVET+FGRR++  EINS   ++R   ER AINAP
Sbjct: 791 IDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTAINAP 850

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI+V   L+D  L  +++LQ+HDELV EV E+ +    + I   M  A
Sbjct: 851 MQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELVLEVREDLVEQVREAICPLMSGA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL V   V NNW E +
Sbjct: 911 A----QLDVPLLVEAGVGNNWDEAH 931


>gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2]
 gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2]
          Length = 928

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 362/982 (36%), Positives = 556/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKIGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEY-A 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I     +  K     LE   
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L +       L+   K  EF + +  V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVRQPAAEELLGLFKQYEFKRWVTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                 +     I  ++TP++        
Sbjct: 301 GTKPA--------------------------------AKLQETIVVDETPEE-------- 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   +++W+ KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 321 -PATVLSYENYVTILDEATLEEWIAKLKKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     ++D           L  LK   E+E+  K+G N+KYD+ +L 
Sbjct: 379 VAAYVPVAHDYLDAPDQIARDRA---------LELLKPLLEDENAHKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGITFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E +D P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E+++ L  LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEELTQRLNELEQKAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  INK+T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++ + S+ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKIHQLMEN-- 906

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
             +  + VPL V +    NW +
Sbjct: 907 --ETQIDVPLLVEVGSGENWDQ 926


>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
 gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
          Length = 931

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 358/983 (36%), Positives = 557/983 (56%), Gaps = 71/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+         SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYHP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ DYK++RP +P+ L  Q+  +    +A G P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEDYKSHRPPMPDDLRAQIEPLHNMVKAMGFPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  EG  V I + DKD+ QLV+P   L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAQQAANEGKPVLISTGDKDMAQLVTPDITLINTMNNTILGPDEVRAKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + ++ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFANLDKIAGLSFRGAKTMAAKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L L + +   L       EF + +  VA+    + +
Sbjct: 241 DVAYLSYKLATIKTDVELVLNSEQLTLIEPDTDVLKEMFTRYEFKRWLADVASGQWLNGS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             + V       +     ++  +D +  +  S  S                         
Sbjct: 301 GRKHV-------QPAQPFVKPSVDDEPKVAASVLS------------------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                   + Y  I++ + +  W+++++T G  +F   TD++D   +  + ++ + ++  
Sbjct: 329 -------QEGYVTILDEQTLIAWLERIKTKGVFAFDTETDSLDTISTTLVGVSFA-INAG 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D         ++L+ LK   E+   LKIG N+K+DK V+ 
Sbjct: 381 EAAYLPLGHDYLDAPEQLDRD---------KVLALLKPVLEDASVLKIGQNLKFDKGVMA 431

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RYGI++RG   D ML SYVLDS    HD+ S+++++L++   T +EI    K+ +  ++I
Sbjct: 432 RYGITLRGIAFDTMLESYVLDSVAGRHDMDSLSERYLNHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L  +L  KL  E  L  V++ +D P++ ++S+ME  G+ ID 
Sbjct: 492 PLEQAAVYAAEDADVTLRLHQVLSEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDT 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E+++ L  LE   ++L+GE FNLSS KQL  IL+ KL+ P   KT  G   T
Sbjct: 552 AILAEHSKELTQRLAELEVRAHELAGEVFNLSSTKQLQAILYEKLQLPVTKKTPKGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  A T TGR
Sbjct: 612 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPMMINPLTKRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH++    L + F 
Sbjct: 671 LSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYCIVAADYSQIELRIMAHLSCDAGLLKAFS 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIHR  AAE+FG+ I+KV+ + RR AK INF +IYG+S F L+ QL I R+EA  Y+
Sbjct: 731 DGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMSAFGLSRQLGIGRNEAQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    + GYV T+ GRR++  +I+S  +  R   ERAAINAP+
Sbjct: 791 NLYFERYPGVQHYMEQTRQQAAEQGYVATLDGRRLYLPDIHSRNAISRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM S+    L   +    M++Q+HDELVFEV  E +   ++  + ++ ++
Sbjct: 851 QGTAADIIKKAMASIDAWLLSQEEPLINMIMQVHDELVFEV-HESVLEGAKAKIKALMES 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
           C+    L VPL+V++    NW E
Sbjct: 910 CM---QLNVPLQVDVGSGKNWDE 929


>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 930

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 372/983 (37%), Positives = 564/983 (57%), Gaps = 72/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIIQYKP----SHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +     A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVAAMGLPILVISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEKEG +V I + DKD+ QLV+P   L +T+    +  E VI+K+G+P E ++   
Sbjct: 121 LALQAEKEGRSVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVIEKYGVPSELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINASRIKQKKRRENILEY 236
           AL GDS DNIPG+PG+G KTA  LLQ        Y  L++I   + R   K     + ++
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGGLDAIYARLDDIATLSFR-GAKTLGGKMEQH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS +L  ++TDV +      L +   +   L++     EF + IN V        
Sbjct: 240 KEVAYLSYQLATIKTDVELDKHCIELSVVPPDADELLALFSHYEFKRWINDVQ------- 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                     N T  +G       +   T+  S   +L+   S                 
Sbjct: 293 ----------NGTWLEG-------NGQKTVSGSAKPALAVPNS----------------- 318

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +   I+ +SY  I+  + ++ W++KL+   + SF   TD +D   +  + ++ +    
Sbjct: 319 --TTVKISPESYQTILERQSLEAWIEKLKHAPAFSFDTETDGLDTLTANLVGMSFAIAAG 376

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           + +    VE  ++ L+ H   D+  +  L  E+L+ LK   E+ +  KIG N+K+D+ VL
Sbjct: 377 ESE----VEAAYLPLA-HDYLDAPQQLDL-HEVLTALKPLLEDANLPKIGQNLKFDRGVL 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            RY + + G   D ML SYVL+S    HD+ S+A++ LSY   T ++I    K  +  ++
Sbjct: 431 ARYDVVLEGIVFDTMLESYVLNSVAGRHDMDSLAERHLSYKTTTFEDIAGKGKKQLTFNQ 490

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I   +  ++A E+++V L+L   + P+L   E L  V+++++ P++ V+S+ME TG+ ID
Sbjct: 491 IPLEEAAKYAAEDADVTLRLHQAMYPQLASAEVLKKVFQKIEMPLVPVLSRMERTGVLID 550

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L + S EI+  L  LE++ Y L+ E+FNL+SPKQL  ILF K+K P   KT  G   
Sbjct: 551 ARTLAEHSREITVRLDELEKSAYALADEEFNLASPKQLQVILFEKMKLPVLKKTPNGAPS 610

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + LE++   ++ + + ILE R L+K+KSTY D LP  +N  T RVHT Y  A T TG
Sbjct: 611 TNEEVLEEL-AENHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTNRVHTSYHQAVTATG 669

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F
Sbjct: 670 RLSSRDPNLQNIPVRNEEGRRIRQAFIAPTGYRIMAADYSQIELRIMAHLSQDKGLLAAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAE+FGV +E V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y
Sbjct: 730 AQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQRY 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+  Y+E+T+    ++G+VET+ GRR++  EI S  +  R  +ER AINAP
Sbjct: 790 MDLYFERYPGVLNYMERTRQQAAEHGFVETLEGRRLYLPEIKSRNAMRRKASEREAINAP 849

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI + AMI+V   +   K   +M++Q+HDELVFEV E E+  A Q I   ME++
Sbjct: 850 MQGTAADIIKLAMIAVDDWIVSEKPNVRMIMQVHDELVFEVHESELAMAEQKIRALMEQS 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
            L    L VPLKV++ + +NW +
Sbjct: 910 ML----LDVPLKVDVGIGDNWDQ 928


>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
 gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
          Length = 930

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 377/985 (38%), Positives = 556/985 (56%), Gaps = 76/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRAF+A P L+   +  P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLVLVDGSSYLYRAFHAFPPLTNSLNE-PTGAMYGVLNMLKSLISQVQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ-LPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFR+E++  YK++RP +P+ L  Q LPL  +  +A GIP + ++G EADD+I 
Sbjct: 61  VFDAKGKTFRDEMFEQYKSHRPPMPDELRSQILPLHNI-IRALGIPLLVVEGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A K G  V I + DKD+ QLV     L +T+    +D E VI+K+G+PPE ++  
Sbjct: 120 TLAVQASKAGKKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREGVIEKYGLPPELIIDY 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GDS DNIPG+PG+G KTA  LLQ  GN+ +I  N  ++ +      KK  + +LE 
Sbjct: 180 LALMGDSSDNIPGVPGVGEKTALSLLQGIGNMTDIYANLEKVAELPIRGAKKLGDKLLEA 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS  L  ++TDV + I  E L     N  +L+ +    EF + +           
Sbjct: 240 KEMADLSYALATIKTDVKLEITPEQLTFGSANNDKLVEYFGRYEFKRWL----------- 288

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERL 355
                                TEI  +    +S  ++ S+Q  KIN+ Q TP     E  
Sbjct: 289 ---------------------TEIMHN---GSSSVTNGSEQPVKINNYQATPPATEPESA 324

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            K+    I+   Y  I++  D ++W+ KL      +    TD +D   +  + I+ + L+
Sbjct: 325 VKIE---IDRSKYECILSVADFEKWLDKLAQAKLIAVDTETDNLDYMSANLVGISFA-LE 380

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   +I        D+          LS LK   EN    K+G NIKYD  +
Sbjct: 381 NGEAAYLPLRHNYIGAPQQIDFDTA---------LSRLKPILENPVIEKVGQNIKYDLSI 431

Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
             R GI+++G   D ML+SYVLDS GR  H++  +A+++L +   + +EI    K  +  
Sbjct: 432 FARNGINVQGVTYDTMLLSYVLDSTGR--HNMDDLAKRYLGHQTISFEEIAGKGKGQLTF 489

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           D+I       +A E++++ ++L  +L  K+  +  L+ +Y  ++ P++ V+S+ME  G+ 
Sbjct: 490 DQIPLEHATTYAAEDADITMKLQQVLWEKVSEQPTLVKLYRTMELPLLSVLSRMERNGVL 549

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID + L   S +I++ L +LE+  Y+L+G+ FNL+S KQL +ILF KL  P   KT  G 
Sbjct: 550 IDSNTLLTQSNKIAERLTALEQQAYELAGQTFNLASTKQLQEILFDKLGLPVLKKTPKGA 609

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + LE++   D+ + K ++E R LSK+KSTY D LP  INK T RVHT Y  A T 
Sbjct: 610 PSTNEEVLEEL-AYDHELPKLLVEHRGLSKLKSTYTDKLPQMINKHTGRVHTSYHQAVTA 668

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G++IR+AFI      +++ADYSQIELRI+AH++K   L  
Sbjct: 669 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIPREGFTMVAADYSQIELRIMAHLSKDQGLIN 728

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAEIFG+ +E+V+ + RR AK INF +IYG+S F L+ QL IPR++A 
Sbjct: 729 AFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIYGMSSFGLSRQLGIPRNDAQ 788

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+PG+  ++   +   +  GYV T+F RR++  +INS  +  R   ER AIN
Sbjct: 789 KYMDLYFQRYPGVQTFMTDIRETAKAQGYVATLFDRRLYLPDINSSNAIRRKAAERVAIN 848

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI +RAMI + K +  +    +M++Q+HDELVFEV  E++   SQ+I  +ME
Sbjct: 849 APMQGTAADIIKRAMIDLDKQIVGNP-DIQMIMQVHDELVFEVRSEKVEEFSQLIKQTME 907

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
           KA      L VPL V++ V  NW E
Sbjct: 908 KAA----QLVVPLIVDVGVGQNWDE 928


>gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 370/989 (37%), Positives = 560/989 (56%), Gaps = 76/989 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRAF++ P L+    G    A+ G  NML  LL    K+   SH  V
Sbjct: 6   ENPFILVDGSSYLYRAFFSPPHLTNSA-GEATGAVYGVVNMLQSLL----KQFNPSHVVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++Y +YK+NRP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYTEYKSNRPSMPDDLRIQIEPLHAVIKAMGLPILTIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  A  +G    I + DKD+ QLV   T L +T+    +D+E V +K+GIPPE ++   
Sbjct: 121 LSRQASAQGITTLISTGDKDMAQLVDTNTLLINTMTNTVLDVEGVNEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----------ASRIKQKKRRENI 233
            L GD +DNIPG+PG+G KTA  +LQ  G++++I +N           S+   KK ++N 
Sbjct: 181 GLMGDKVDNIPGVPGVGEKTALAMLQGLGSMDDIYLNLDKLAALGFRGSKTIAKKMQDN- 239

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E ARLS +L  ++TDV ++   E    +  +   LI     LEF + ++       
Sbjct: 240 ---EEMARLSYQLATIKTDVELSESYEDFKPKAQDTDALIKLFGQLEFRRWLS------- 289

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                    +LD  +  N   A+ +     T+  T+  S+ +                  
Sbjct: 290 --------ALLDNGSMTNHQGAVSSTATSSTSTATANPSATTSS---------------- 325

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    I+   Y  I     + QW+ KLE     SF   T ++D   ++ + ++ + 
Sbjct: 326 ---------IDRSGYKTIYTQGQLTQWIAKLEAAELFSFDTETTSLDYMQARIVGLSFAV 376

Query: 414 LDQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                 D    +E  ++ L+ H   D+  +  LT   L  L+   E+E + K+G N+KYD
Sbjct: 377 QSNVGSDEQPIIEAAYLPLA-HDYIDAPKQLDLTT-TLEKLRPLLESEKYKKVGQNLKYD 434

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
           + VL  +GI ++G + D ML SYVLDS GR  HD+ ++A K+L +   + +EI    K  
Sbjct: 435 RSVLLNHGIELKGIKFDTMLESYVLDSTGR--HDMDTLALKYLGHQCISFEEIAGKGKKQ 492

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           +P ++IS  +   +A E+++V L+L L L  +L  E KLL V+  ++ P++ V+S +E  
Sbjct: 493 LPFNQISIIEAAPYAAEDADVTLRLHLQLFEQLSAEPKLLSVFNNIELPLLTVLSDIERG 552

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G++ID DLL + SAEI K LL LE   Y+ +G+ FNLSSPKQL  IL+ +L+ P   KT 
Sbjct: 553 GVEIDSDLLTKQSAEIGKRLLELEALAYEEAGKPFNLSSPKQLQTILYDELELPVLKKTP 612

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G   T  + L+++     P+ K I+E R LSK+KSTY D LP  +N++T R+HT Y  A
Sbjct: 613 KGAPSTAEEVLQELAL-TYPLPKLIIEHRGLSKLKSTYTDKLPKMVNEKTGRLHTSYQQA 671

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T+TGRL+S +PNLQNIPI++  G++IR+AFI+ P  K+++ADYSQIELRI+AH+++   
Sbjct: 672 VTVTGRLSSTDPNLQNIPIRSAEGRRIRQAFIAQPGYKIVAADYSQIELRIMAHLSQDKG 731

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F    DIH+  A+E+F V +++V+ + RR AK INF +IYG+S F LA QL I R 
Sbjct: 732 LLDAFSTGKDIHKATASEVFSVPLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIGRH 791

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  Y+ +YF+R+PG+  Y+E T++   +  YVETI GRR+    I S    ++   ERA
Sbjct: 792 EAQLYMDKYFNRYPGVLIYMEDTRSLANEKAYVETILGRRLQLPNIKSRNGMLKKAAERA 851

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIV 945
           AINAP+QG+AADI ++AMI +   +      + +ML+Q+HDELVF + EE + + ++ I 
Sbjct: 852 AINAPMQGTAADIIKKAMIDMADWIAQKSPGSVQMLMQVHDELVFSIKEELVESYTKEIQ 911

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M KA     +L VPL  +  V +NW E
Sbjct: 912 AIMAKAA----DLDVPLIADAGVGDNWDE 936


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 368/983 (37%), Positives = 542/983 (55%), Gaps = 71/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    E IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASERIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+YP+YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G+LE +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSLEKLYDNLDDIASLGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    + L+  + N   LI     L F   +N +         
Sbjct: 241 EEAFLSYELATIKLDVELEETPDSLLKAEPNTDELIKLYGQLVFKSWLNEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 L+  T    G+ +  E     +   +  ++    TS +                
Sbjct: 292 ------LEGGT----GVVVADEKSGAASGAGASATASEIDTSAVT--------------- 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I++ +    W+ KL+     +F   TD++D   +  + ++ +T ++ 
Sbjct: 327 -----IDRSQYETILDQQAFNTWLDKLKAADVFAFDTETDSLDYMVANLVGVSFAT-EEG 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 381 VAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 432 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +   EKL  +YE ++ P++ V+S++E TG+ ID 
Sbjct: 492 ELEQASPYAAEDADVTLRLHNRLLANIEQDEKLKTIYEEVEVPLVPVLSRIERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  ++++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 552 MKLAAQSQEIALRLDELEQQAFEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ D G++IR+AFI+P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 671 LSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQ 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 QGKDIHAATAAEIIGVDIEQVSAEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQQYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 791 DTYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E       K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDEWIESQGQGRVKLLMQVHDELVFEVQESALAEIESKVQELMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL       +NW +
Sbjct: 911 A----QLDVPLIAEAGHGDNWDQ 929


>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
 gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
          Length = 934

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 366/984 (37%), Positives = 556/984 (56%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N   LVDGSS+++RA++A P  +   +G P  A+ G  NML  LL    K+   +  AV
Sbjct: 6   DNPFILVDGSSYLFRAYHAAPNFTNG-NGEPTGAVYGVINMLRSLL----KQFETNRIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           IFD    TFRN++YP+YKANRP +P+ L  Q+ PL +L  +A G+P I I G EADD+I 
Sbjct: 61  IFDAKGKTFRNDMYPEYKANRPPMPDELRCQIEPLHKL-IKAMGLPLISISGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A K G  V I + DKD+ QLV     L +T+    +  E V++K+G+PPE ++  
Sbjct: 120 TLASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMGPEGVVEKFGVPPELIIDY 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEY 236
            AL GD+ DNIPG+PGIG KTA  LLQ  G L+ +  N   I        K   + + E 
Sbjct: 180 LALMGDASDNIPGVPGIGDKTARALLQGVGGLDTLYANLDDIAPLGFRGSKGMAKKLEEN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS KL  ++ DV +    E L+ ++ N   LI     + F + +  +        
Sbjct: 240 KEGAYLSYKLATIKLDVELEQQPEELVKQEPNVDELIQMFGQMNFKRWLTEM-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                    ++ ++ K ++ ET   R T+  + +  S  ++T  I + Q           
Sbjct: 292 ---------LDGSDGKIVSHETSAHRTTSSSSDEGDSAEEET--IVAAQ----------- 329

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 ++   Y  I   +    W++K+      +F   TD++D   +  I ++ S +++
Sbjct: 330 ------VDRSKYETIFTKEAFSAWLEKVNNAEVTAFDTETDSLDYMVANLIGLSFS-VEE 382

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     V   ++D      +D          +L+ LK + E+E   K+G N+KYD  VL
Sbjct: 383 GEAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPYLEDETKAKVGQNLKYDASVL 433

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            RY I M+G + D ML SYV +S    H++ S+A ++L +     +EI    K  +  ++
Sbjct: 434 ARYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQ 493

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I+  +   +A E++++ L+L  +L  KL+  EKL  V+  ++ P+I V+S+ME  G+ ID
Sbjct: 494 IALEEAAPYAAEDADITLRLHNVLHAKLVTDEKLNAVFTDIELPLISVLSRMERKGVYID 553

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LL   S EI + L  LE   ++++G++FN++SPKQL  ILF K++ P   KT +G   
Sbjct: 554 DMLLSAQSLEIGQRLDELETASFEVAGQEFNMNSPKQLQTILFEKMELPVIKKTPSGAAS 613

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+++   +  + K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TG
Sbjct: 614 TNEEVLQELAL-EYELPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATG 672

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+   G++IR+AF++P   K+++ DYSQIELRI+AH+++   L + F
Sbjct: 673 RLSSTDPNLQNIPIRNKEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAF 732

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AAE+ GV+IE+V+ + RR AK INF +IYG+S F LA Q+ I R EA DY
Sbjct: 733 SAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQIGISRGEAQDY 792

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ +Y+E+T+    + GYVET++GRR++  EIN+  +  R   ERAAINAP
Sbjct: 793 MNVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLYLPEINARNAIRRKAAERAAINAP 852

Query: 892 IQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI ++AMI V   +E        +L+Q+HDELVFEV E+E+   ++ +   ME 
Sbjct: 853 MQGTAADIIKKAMILVDNWIEAEGTGRVNLLMQVHDELVFEVKEDELEAITKQVTALMEA 912

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    ++L VPL       +NW E
Sbjct: 913 A----VSLDVPLIAESGFGDNWDE 932


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 357/985 (36%), Positives = 555/985 (56%), Gaps = 78/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GKPTGAMYGVLNMLRSLLLQYKP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEAYKSHRPPMPDDLRAQIEPLHNMVRAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K+G  V I + DKD+ QLV+P   L +T+    +  + V++K+GIPPE ++   
Sbjct: 121 LALEAGKKGKPVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGIKDIYANLDKVADLTFRGAKTMATKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L + +     L+   +  EF + I            
Sbjct: 241 EMALLSYQLATIKTDVELDLTSEQLTVNEPAVEELLGLFREYEFKRWI------------ 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                               T+++    ++  +            S    QK  +E++++
Sbjct: 289 --------------------TDLEEGKWLQGKK------------SHPAAQKALVEQVEE 316

Query: 358 L--SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +   ++ + Y  I++ +  + W+++L+T    +F + TD++D   +  + I+ + ++
Sbjct: 317 QVETTSTLSAEGYVTILDEETFESWLKQLKTSSLFAFDLETDSLDTLSANIVGISFA-IE 375

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                   V   ++D      ++S         +L  LK   E+   LK+G N+KYD+ V
Sbjct: 376 PGKAAYLPVAHDYLDAPAQLDRNS---------VLERLKPLLEDPALLKVGQNLKYDRGV 426

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L  Y I ++G + D ML SY L S  S HD+ +++ +WL++   + +EI    K  +  +
Sbjct: 427 LKNYDIELQGIKFDTMLESYALSSVGSRHDMDTLSSRWLNHKTVSFEEIAGKGKKQLTFN 486

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q   +A E+++V LQL L + P+L  E+    V+E ++ P++ V+S++E  G+ I
Sbjct: 487 QIDLEQAAHYAAEDADVTLQLHLKMWPELEKEQGPKEVFENIEMPLLTVISRIERNGVLI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           DQ +L   S E++  L  LE+  ++L+GE FNLSSPKQL  ILF K       KT  G  
Sbjct: 547 DQGILAAHSKELTIRLAELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAP 606

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T+ + L ++   D P+ K ILE R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 607 STSEEVLAELAL-DYPLPKVILENRGLAKLKSTYTDKLPLMINPITGRVHTSYHQAVTAT 665

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AFI+    K+++ADYSQIELRI+AH+++   L   
Sbjct: 666 GRLSSTDPNLQNIPVRNEEGRRIRQAFIASKGHKIVAADYSQIELRIMAHLSQDKGLLSA 725

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   +DIHR  AAE+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL I   EA  
Sbjct: 726 FAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKK 785

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+ EY+E T+    + GYV T+ GRR++  +IN+  +  R   ERAAINA
Sbjct: 786 YMDLYFERYPGVLEYMESTRQQAAEKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINA 845

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AMI+V   L        KM++Q+HDELVFEV   E+  A+  I   ME
Sbjct: 846 PMQGTAADIIKKAMIAVDGWLTPQSAPDVKMIMQVHDELVFEVKTSEVEAATAKIRDLME 905

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            +    + L VPL+V++ V +NW++
Sbjct: 906 NS----MKLDVPLQVDVGVGDNWEQ 926


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 370/983 (37%), Positives = 547/983 (55%), Gaps = 69/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+ +  G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNRA-GEPTGAMYGVLNMLRSLMLQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    QA G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIEPLHKMVQAVGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAQAAEKAGRHVLISTGDKDMAQLVTPNITLINTMNNTILGPQEVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEY-A 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+L+ I  +  ++     +  K     LE   
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGIGSLKQIYSDLDKVATLSFRGAKTMGAKLELNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  + L L+  +  +L       EF + +    T       
Sbjct: 241 DQADLSYLLATIKTDVELDVTCDDLKLKPMDTAQLHELFSRYEFKRWLEDAETGSWL--- 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                     + E K  A       DT    +      ++T+ I                
Sbjct: 298 ----------SGEKKAPAARKSAKDDTETAVTAV----EETTAI---------------- 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  +++   +   +  L+     +F   TD++D   +  + ++ +T    
Sbjct: 328 -----LSQENYLTVLDDAALDSLIASLKAAKIFAFDTETDSLDVLTTNLVGLSFATAPSV 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D         ++L+ LK   E+ + LK+G N+KYD+ V+ 
Sbjct: 383 A-AYIPVGHDYLDAPDQLDRD---------DVLAKLKPVLEDANLLKVGQNLKYDQGVMA 432

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RYGI ++G   D ML SY LDS    HD+ S+A++ L++   T +EI    KS +  ++I
Sbjct: 433 RYGIELQGIAFDTMLESYDLDSVAGRHDMDSLAERHLNHKTITFEEIAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L L P+L  E  L  V+  +D P++ V+S+ME TG+ ID 
Sbjct: 493 ALEQATPYAAEDADVTLQLHLKLWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L + S E++  L  LE+  ++ +GE FNLSSPKQL  ILF K K P   KT  G   T
Sbjct: 553 NILGKHSQELAIRLDELEKKAHEAAGEPFNLSSPKQLQAILFEKQKLPVVKKTPGGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L +++     +   ILE R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLAELSEQGFELPTIILEHRGLAKLKSTYTDKLPQMINPATGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   K+++ADYSQIELRI+AH++    L   F 
Sbjct: 673 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSGDKGLLTAFA 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL I R EA  Y+
Sbjct: 733 AGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMSAFGLARQLNIARGEAQRYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYVET+ GRR++  EI+S     R   ERAAINAP+
Sbjct: 793 DLYFERYPGVLEYMERTRQQAAEQGYVETLDGRRLYLPEIHSRNGMRRKGAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMISV   L   K    +M++Q+HDELVFEV E  I    + +   ME++
Sbjct: 853 QGTAADIIKRAMISVDAWLLQQKEPLVRMIMQVHDELVFEVHESVIEQTVEKVRELMEQS 912

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPLKV++    NW +
Sbjct: 913 ----LELAVPLKVDVGTGENWDQ 931


>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
 gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
          Length = 927

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 362/988 (36%), Positives = 540/988 (54%), Gaps = 86/988 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+         + A + D
Sbjct: 4   LILIDGSSYLYRAFHALPPLTNAA-GEPTGALFGVVNMLRATLKEK-----PDYVAFVVD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++YP YKANRP +P+ L  Q+  +     A GI  + + G EADD+I T   
Sbjct: 58  APGKTFRDDLYPQYKANRPPMPDELRAQVQPMCDIVHALGIDILRVDGVEADDVIGTLAT 117

Query: 127 IAEKEGFAVTIISTDKDLMQLV-------SPTTCLYDTVKEEKIDIEH-VIKKWGIPPEK 178
            A   G  VTI + DKD  QLV         +  L +T+   ++D +  VI+K+G+P  +
Sbjct: 118 QAADAGMEVTISTGDKDFAQLVRAPDGNGGGSIALVNTMTGSRMDSDAAVIEKFGVPAGR 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +V L AL GD+IDN+PG+   G KTAA  + E+G+LE ++  A  IK K   +N+    +
Sbjct: 178 IVDLLALMGDTIDNVPGVEKCGPKTAAKWIGEHGSLEGVIAAAPGIKGKIG-DNLRAALD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAA 297
              L+R+LV +RTDVP+    E L+L + +  +L        F + +  +   T   + A
Sbjct: 237 RLPLNRELVTIRTDVPLEQGPEALVLRERHVDQLRGLYARYGFNQALRELEGGTVGAEVA 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             EP                         + + F++ +                 E L  
Sbjct: 297 EKEP----------------------GRARGTGFATATAAAP-------------EGLDP 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
               P     Y  +   + +Q W+  L   GS +    TD++D   ++ + +        
Sbjct: 322 ALAAP---GQYETVTTVEQLQAWIATLRAAGSFALDTETDSLDPMRARLVGL-------- 370

Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLT--KEILSYLKKFFENEHFLKIGHNIKYD 472
              SF  E     ++ L      D  G       ++ L  L+    +    KIG + KYD
Sbjct: 371 ---SFAAEPGRAAYLPLG----HDYPGAPAQLGYEQALDLLRPLLADPAVRKIGQHGKYD 423

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
             VL R+G+++ G+ +D +L S+VLDSG + HD+ S+A + L YT    ++I       I
Sbjct: 424 LHVLRRHGVAVAGYADDTLLESFVLDSGNARHDMDSLALRHLGYTTVKYEDICGKGVRQI 483

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
           P  + +      +A E++++ L+L  +L  +L  E +L  VY  ++ P++ V+ ++E  G
Sbjct: 484 PFSQCALDDATRYAAEDADITLRLHRVLSARLQAEPQLQAVYRDIEMPLVQVLERIEANG 543

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + +D D L++  A++S+ +L  +E    L+G  FNL SPKQL  +LF +LK P+  KT  
Sbjct: 544 VLVDMDELRRQGADLSRRMLEAQERATALAGRSFNLDSPKQLCALLFDELKLPALVKTPK 603

Query: 648 GQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           GQ  T  + LE I +  + P I  ILE+R L+K++STY D LP  +N  T RVHT Y  A
Sbjct: 604 GQPSTNEEALEAIADLHELPRI--ILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQA 661

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRL+S +PNLQNIPI+TD G++IRRAF++PP +KL++ DYSQIELRI+AH+++   
Sbjct: 662 GAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPPGRKLVACDYSQIELRIMAHLSQDPG 721

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F +  DIHR  AAE+FG  +E+V+   RR AK INF ++YG+  F LA QL I R 
Sbjct: 722 LLGAFASGADIHRATAAEVFGRPLEEVTVNERRAAKAINFGLMYGMGAFGLARQLGIDRG 781

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A DYI  YF R+PG+ +Y+E+T+   R+ GYVET+FGRR+H + IN+  ++ R   ERA
Sbjct: 782 QAQDYIALYFSRYPGVRDYMERTREQARERGYVETVFGRRLHLEYINARNAAQRAGAERA 841

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AADI +RAMI+V   + DH    +MLLQ+HDELVFE  EE +      +  
Sbjct: 842 AINAPMQGTAADIIKRAMIAVDAWIADHAQRARMLLQVHDELVFEADEEFVPELVSRVPE 901

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M  A     +L VPL V+  + NNW E
Sbjct: 902 LMSAAG----DLSVPLVVDTGIGNNWDE 925


>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
 gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
          Length = 901

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 367/974 (37%), Positives = 549/974 (56%), Gaps = 87/974 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+++RAF+A P L+    G P  AI G  NML KLL   + + IA    V+FD
Sbjct: 7   LILIDGSSYLFRAFHALPSLTTS-KGQPTGAIYGVINMLRKLLDEYQPQYIA----VVFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++  YKA+RP +PE L  Q+  +    +A G+P + ++G EADD+I T   
Sbjct: 62  AKGKTFRHELFEQYKAHRPPMPEELACQIQPLHDLIRALGLPLLCMKGVEADDVIGTLAR 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +     I S DKDL QLV+P   L +T+   K+D   V  K+ + PE++V   AL 
Sbjct: 122 QATAQRLETLISSGDKDLAQLVNPHVNLVNTMNLSKLDPAGVKAKFNVSPEQIVDYLALV 181

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DNIPGIPG+G KTAA LL +Y +L+ I+  AS IK  K  EN+  +     L+++L
Sbjct: 182 GDTVDNIPGIPGVGPKTAAKLLCQYHSLDQIMAYASDIK-GKMGENLRSHLPQLPLAKQL 240

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +R DV +    + L     N   L     ALEF   +  +    +  A+   P     
Sbjct: 241 ATIRQDVSLDWSPKELQRAPPNISALRELYAALEFKSWLRELLDNENSHASTPHP----- 295

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
             + N   A ET                      + SE++                    
Sbjct: 296 --STNPAPAYET----------------------VFSEES-------------------- 311

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
                     ++ W+ +L+T    +F + T+++D   ++ + ++ +            E 
Sbjct: 312 ----------LEHWIARLKTTELFAFDLETNSLDYMEAEIVGLSFAIQPH--------EA 353

Query: 427 IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
           ++I L     +D+T    L +E +L+ LK   E+    K+G N+K+D+ VL  YGI ++G
Sbjct: 354 MYIPLG---HEDATAPPQLPREQVLARLKPLLEDPRHGKVGQNLKFDRNVLANYGIELQG 410

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT--RKEILKSRKS-SIPIDKISDSQVQEH 541
              D ML SYVLDS  + H++ S+A K+L  T    E++  + S  +P ++++  +   +
Sbjct: 411 IHHDSMLESYVLDSTATRHNMDSLALKYLQRTTITYEMVAGKGSKQLPFNQVTIEKAAPY 470

Query: 542 AIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ LQL     P++  E+ L  +Y+ L+ P+I V+S+ME  G+Q+D   LK  S 
Sbjct: 471 AAEDADISLQLHRYFWPRIQQEESLRRLYQELEIPLIPVLSRMERNGVQVDTTQLKTQSD 530

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E++  L  LE+  +DL+GE FNL+SPKQ+  IL+ KLK P   KT TGQ  T    L+++
Sbjct: 531 ELAARLKKLEQEAFDLAGESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQEL 590

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ + +L++R LSK+KSTY D LP  +N  T RVHT Y  A T TGRL+S +PNL
Sbjct: 591 AL-DYPLPQRLLQYRTLSKLKSTYTDRLPLQVNPHTGRVHTSYHQAVTATGRLSSSDPNL 649

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+T  G++IR+ FI+PP  +L++ADYSQIELRI+AH+++   L   FE   DIH+ 
Sbjct: 650 QNIPIRTAEGRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQR 709

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A E+F   +E+V+P+ RR AK INF +IYG+S   L  QL I R+ A  YI+RYF R+P
Sbjct: 710 TATEVFRTPLEEVTPEQRRSAKAINFGLIYGMSAHGLGRQLGINRTAAQHYIERYFQRYP 769

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y++      RQ GYVET+FGRR++  +I+S ++  RN  ER AINAP+QGSAADI 
Sbjct: 770 GVKAYMDNICQQARQKGYVETLFGRRLYLPDIHSRQTQRRNQAERTAINAPMQGSAADII 829

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +RAMI     L+ +    +M++Q+HDELVFEV E+++    + I  +M  A      L++
Sbjct: 830 KRAMIHTDGWLQKNSDNARMIMQVHDELVFEVAEDKLEITMRAIRENMTAAA----QLKI 885

Query: 961 PLKVNIKVSNNWQE 974
           PL V I    NW E
Sbjct: 886 PLIVEIGSGANWDE 899


>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
 gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
          Length = 928

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 366/982 (37%), Positives = 548/982 (55%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEY-A 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I     +  K     LE   
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +  E L ++      L+   +  EF +    V       A 
Sbjct: 241 EVAYLSYKLATIKTDVELELTCEQLEVKQPIADELLDLFRKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+   D  T                                 
Sbjct: 301 GAKPAAKPQET-----LVIDESPDEATAA------------------------------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----LSYENYVTILDEATLKAWIAKLEKAPVFAFDTETDSLDNITANLVGLSFA-VEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     ++D           L  LK   E+E   K+G N+KYD+ +L 
Sbjct: 379 VAAYVPVAHDYLDAPDQIARDRA---------LELLKPLLEDEKVSKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G+ ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEQKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIPPKDHVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   LE  +   +M++Q+HDELVFEV ++++   S+ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDGWLESEQPRVRMIMQVHDELVFEVHKDDLDVVSKKI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 923

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 362/983 (36%), Positives = 543/983 (55%), Gaps = 79/983 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRA++A P  +   +G P  A+ G  NML  +L+    E    H AV
Sbjct: 6   ENPLILIDGSSYLYRAYHAAPNFTNS-EGQPTGAVYGVINMLRSMLRQFSTE----HIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E++ DYKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMFADYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+ +  +D   V++K+GI PE ++   
Sbjct: 121 LATQASKAGMPVLISTGDKDMAQLVDENITLINTMTDVVMDPAGVVEKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ +      I        K   + +L+  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDALYDRLDEIPALGFRGSKTMPKKLLDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV + I  + L+  + +   L      L+F + +  + +  D    
Sbjct: 241 EGAYLSYQLATIKLDVELDITPQELVKAEPDVDELTRLFGQLQFRRWLEEMLSGSDGK-- 298

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   I   E    A+ +E                                     K
Sbjct: 299 --------IVADEKAAQAVASE-------------------------------------K 313

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +    I+   Y  I++      W+++L++  + +F   TD++D   +  + ++ + +++ 
Sbjct: 314 VIAPVIDRSGYEVILDQSRFDAWLEQLKSAEAFAFDTETDSLDYMVANLVGVSFA-VEEG 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+ +  KIG N+KYD  V+ 
Sbjct: 373 KAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPLLEDPNQAKIGQNLKYDASVIA 423

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L +   + +EI    K  +  ++I
Sbjct: 424 RYGIEMQGIKYDTMLESYVYNSVVGRHDMDSLALRYLEHKNISFEEIAGKGKGQLTFNQI 483

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ L+L   L PK+   EKLLHV+  ++ P++ V+S+ME TG+ ID 
Sbjct: 484 DLEQAGPYAAEDADITLRLHNALYPKVSADEKLLHVFSDIEMPLVPVLSRMERTGVLIDS 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI++ L  LE+  ++++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 544 MKLSAQSQEIAQRLDELEKRAFEIADQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 604 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 663 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKVLAIDYSQIELRIMAHLSGDKALLDAFC 722

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI G+ +++VS + RR AK INF +IYG+S F LA QL + R EA +Y+
Sbjct: 723 HGKDIHAATAAEILGLPLDQVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRGEAQEYM 782

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+    + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 783 NTYFERYPGVLEYMETTRTVASEQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAM+ V + +   +    ++L+Q+HDELVFEV E EI + +Q I   ME A
Sbjct: 843 QGTAADIIKRAMVLVDEWIGQQESGRVRLLMQVHDELVFEVQESEIESVAQEIKTLMESA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +I    NW +
Sbjct: 903 A----QLDVPLIADIGYGENWDQ 921


>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
 gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
          Length = 924

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 347/977 (35%), Positives = 553/977 (56%), Gaps = 63/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLSNAQ-GEPTGALFGVVNMLRSTLKER-----PAYVAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
            D P  TFR+++Y  YKANRP +P+ L  Q+ P+ R+  +A GI  + + G EADD+I T
Sbjct: 56  VDAPGKTFRDDLYDQYKANRPPMPDELRSQVEPMCRI-VEALGISILRVPGVEADDVIGT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCL 182
                  +   VTI + DKD  QLV P   L +T+   ++D +  V++K+G+  ++++ L
Sbjct: 115 LALQGLAQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDL 174

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTAA  L EY +L+ ++  A  +K K   EN+    E   L
Sbjct: 175 LALMGDTVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIG-ENLRAALERLPL 233

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +R+LV +RTD+ +      L L + + P L        FT+ +  +            PV
Sbjct: 234 NRELVTIRTDLALDASPTTLALREQDVPELTELYARYGFTQALKELGAPVPA------PV 287

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                T   +G A             + F+          S + P    L+    LS   
Sbjct: 288 AASEATPSLRGTA-------------AGFAR--------GSVEAPAAGTLD--PALSA-- 322

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  +++ + +Q WV++L+     SF   TD +DA  ++ + I+++    +     
Sbjct: 323 --PGEYETVLSAEQLQAWVERLQQADLISFDTETDALDAMRARLVGISLAVEPGR----- 375

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                +I +  H    +  +  + +++L  L+   ++    K+G + KYD  VL R+G+ 
Sbjct: 376 ---AAYIPVG-HDYPGAPAQLPM-QQVLDALRSVLQDPAKKKLGQHGKYDLHVLRRHGVQ 430

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           ++G+ +D ML S+VL+S  + HD+ S+A ++L Y+    +++       IP  ++   + 
Sbjct: 431 VQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQIPFSQVGIDEA 490

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L   L+P+L+ E  L  VY  ++ P++ V++ +E  G+++D D L++
Sbjct: 491 SRYAAEDADITLRLHHALQPQLLAEPALDSVYRGIEMPLVPVLASIEANGVRVDTDELRR 550

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S ++S  +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + L
Sbjct: 551 QSQDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEAL 610

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E I    + + + ILE+R L+K++STY D LP  +N  T RVHT Y  +   TGRL+S +
Sbjct: 611 EAI-ADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAATGRLSSSD 669

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G++IRRAF++P   +L++ADYSQIELRI+AH+++   L + FE   D+
Sbjct: 670 PNLQNIPIRTEDGRRIRRAFVAPEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADV 729

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG  +E+V+P  RR AK INF ++YG+S F LA  L I R +A DY+  YF 
Sbjct: 730 HRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFS 789

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ +++E+ +   R  GYVET+FGRR++ ++I++    +R   ERAAINAP+QG+AA
Sbjct: 790 RYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAA 849

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAM+ V + L D     +M+LQ+HDELVFE     +      +V  M +A      
Sbjct: 850 DIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERMSQAA----K 905

Query: 958 LRVPLKVNIKVSNNWQE 974
           LRVPL V+  V NNW E
Sbjct: 906 LRVPLVVDTGVGNNWDE 922


>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
 gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
          Length = 951

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 377/995 (37%), Positives = 555/995 (55%), Gaps = 75/995 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRAFYA P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLVLVDGSSYLYRAFYAFPPLTNSL-GEPTGAMYGVLNMLKSLIAQVQ----PTHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+EI+  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T
Sbjct: 61  VFDAKGKTFRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV     L +T+    +D + VI K+GIPPE +V   
Sbjct: 121 LAVQASQQGKNVLISTGDKDMAQLVDDNIMLINTMNNSLLDRDGVIDKYGIPPELIVDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +    
Sbjct: 181 ALMGDSSDNIPGVSGVGEKTALGLLQGIGSMAEIYANLEKVAGLSIRGAKKLGEKLSSAK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS  L  ++T+V + I  + L+L   N  +LI +    EF + +N V +       
Sbjct: 241 ADADLSYLLATIKTNVELDITPDQLVLGQNNQDQLIEYFARYEFKRWLNEVISG------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                     ++  K    E ++D+  T   S+  S   +T KI+               
Sbjct: 295 ---------ESSLTKATQQEIKLDKTQTNSASESKSAVKKTIKID--------------- 330

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413
                    SY  I   + +  W++KL+     +    TD +D   +  + I+ +     
Sbjct: 331 -------RTSYETIDTQEKLNSWLEKLQQADLIAVDTETDALDPMRANLVGISFALTNSE 383

Query: 414 -----LDQKDDTSFKVET-IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIG 466
                L  K       +T +F +   +  Q    KN L KE  L+ LK   EN    K+G
Sbjct: 384 ACYIPLAHKQAVKEMTQTDLFTESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKVG 443

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTRKE---IL 521
            NIKYD  +   + I + G   D ML SYVLDS GR  H++ ++++++L +   E   I 
Sbjct: 444 QNIKYDLTIFANHHIQLNGVCFDTMLQSYVLDSTGR--HNMGALSERYLGHQVIEFESIA 501

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVV 580
              K  +  DKI+ +Q  E+A E++++ ++L  +L  +L     L+ V+  ++ P++ V+
Sbjct: 502 GKGKKQVTFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVL 561

Query: 581 SQMEITGIQID-QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           S+ME  G+ ID Q LLKQ S +I++ L +LE+ +Y  +G +FNL+S KQL +ILFTKL  
Sbjct: 562 SKMERNGVLIDSQALLKQ-SEKIARRLTALEQQVYQEAGAEFNLASTKQLQEILFTKLAL 620

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P  AKT  G   T    LE +    + + K ++E R L+K+KSTY D LP+ +NK+T RV
Sbjct: 621 PIIAKTPKGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRV 680

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y  A T TGRL+S +PNLQNIPIK + G  IR+AFI+    K+I+ADYSQIELRI+A
Sbjct: 681 HTSYHQAVTATGRLSSSDPNLQNIPIKNEEGHCIRQAFIARKGYKIIAADYSQIELRIMA 740

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L   F    DIHR  AAEIFG+ + +V+ + RR AK INF +IYG+S F L+ 
Sbjct: 741 HLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMSSFGLSN 800

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I R+ A  Y+  YF R+PG+  ++   +   ++ GYVET+FGRR++  EINS  +  
Sbjct: 801 QLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEINSSNAIR 860

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAP+QG+AADI + AMI++H  ++ + +  +M++Q+HDELVFEV E ++  
Sbjct: 861 RKGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDI--QMIMQVHDELVFEVKENKVDE 918

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            S +I   ME A     +L VPL V+I V +NW E
Sbjct: 919 YSALIKSLMENAA----HLSVPLIVDIGVGDNWDE 949


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 365/986 (37%), Positives = 547/986 (55%), Gaps = 79/986 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLMQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKSHRPPMPDDLRAQIAPLHEMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G AV I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LALEAEKQGRAVLISTGDKDMAQLVTPGITLINTMTNTVLGPEEVEQKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           A+ GDS DNIPG+PG+G KT   LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTTQALLQGLGGMQSIYDNLDKVADLSFRGAKTMAAKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L + + +   L +     EF + +            
Sbjct: 241 DVAFLSYQLATIKTDVELELACEQLTVNEPDVEALQTLFSRYEFKRWL------------ 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                    +  E K +                      Q  K NS+   QK  L+    
Sbjct: 289 --------ADLQEGKWL----------------------QGKKSNSQ--AQKSLLDEPAV 316

Query: 358 LSQYPIN---NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            +   ++   +D Y  I++      W++KL++    +F + TD++D   +  + IA +  
Sbjct: 317 AAAETVSVLSSDGYVTILDEATFADWLKKLQSADVFAFDLETDSLDTLSANIVGIAFAVA 376

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K      V   ++D      + +         +L  LK   E+    K+G N+KYD+ 
Sbjct: 377 PGKA-AYLPVAHDYLDAPPQLDRAA---------VLKQLKPLLEDSKAAKVGQNLKYDRG 426

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           VL  Y I + G + D ML SY L+S    HD+ S+A +WL++   T +EI    K  +  
Sbjct: 427 VLKNYDIELNGIKFDTMLESYCLNSVGGKHDMDSLAARWLNHKTVTFEEIAGKGKYQLTF 486

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQ 589
           ++I+  Q   +A E+++V LQL L + PKL  E     V+E ++ P++ V+S++E  G+ 
Sbjct: 487 NQIALEQAAHYAAEDADVTLQLHLQMWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVL 546

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           IDQ++L + S E++  L  LE+  ++L+GE FNLSS KQL  ILF K +     KT  G 
Sbjct: 547 IDQNILAKHSQELTTRLAELEQKAHELAGEPFNLSSTKQLQTILFEKQEIKPTKKTPGGA 606

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T+ + L ++   D P+ K ILE R LSK+KSTY D LP  IN  T RVHT Y  A T 
Sbjct: 607 PSTSEKVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPQMINPITGRVHTSYHQAVTA 665

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++ + G++IR+AFI+   K++++ADYSQIELRI+AH+++   L  
Sbjct: 666 TGRLSSNDPNLQNIPVRNEEGRRIRQAFIAGADKRIVAADYSQIELRIMAHLSQDKGLLD 725

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  A+E+FGV + KVS + RR AK INF +IYG+S F L+ QL I   EA 
Sbjct: 726 AFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAK 785

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+PG+  Y+E T+      GYVET+ GRR+   +INS  +  R   ERAAIN
Sbjct: 786 KYMDLYFERYPGVLRYMEATRAQAADKGYVETLDGRRLWLPDINSSNAIRRKAAERAAIN 845

Query: 890 APIQGSAADITRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           AP+QG+AADI +RAMI+V    L+ +    KM++Q+HDELVFE+ ++ +  ASQ I   M
Sbjct: 846 APMQGTAADIIKRAMIAVDGWLLQQNSDEVKMIMQVHDELVFEIHKDAVAGASQTIRELM 905

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E +    + L VPL+V +   +NW +
Sbjct: 906 ENS----MKLDVPLQVEVGTGDNWDQ 927


>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
 gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
          Length = 934

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 369/983 (37%), Positives = 552/983 (56%), Gaps = 68/983 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL     +   SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLL----QYTPSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G AV I + DKD+ QLV+P   L +T+    +  + V++K+G+PP  ++   
Sbjct: 121 LALEAEQAGHAVLISTGDKDMAQLVTPGVTLINTMNNAILGPDEVVEKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  +  ++        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGIGGLDALYADLDKVSTLSFRGAKTMAAKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +    L + + +         A E  KL  R          
Sbjct: 241 DVAYLSYQLATIKTDVKLDLTCAELTVSEPD---------ADELHKLFGRY--------- 282

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E K    + E     + K S   + +       +E T     +E  Q 
Sbjct: 283 ------------EFKRWLADVESGTWLSGKKSAGKAPAAAKKSAQAEDTTSAAVIEPNQ- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D Y  I++   + +W+  L+     +F   TD +D   +  I ++ +T +  
Sbjct: 330 -----LSQDGYVTILDQATLDEWIGYLKGSEVFAFDTETDGLDTLTANLIGLSFAT-EAG 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D  V   +D         E+L  LK   E+E  LK+G N+K+D+ VL 
Sbjct: 384 KAAYLPVAHDYLDAPVQLDRD---------EVLKQLKPILEDEKQLKVGQNLKFDRGVLL 434

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I ++G   D ML SYVLDS    HD+ S+A ++L +   + +EI    K+ +  ++I
Sbjct: 435 RYDIELKGIAFDTMLESYVLDSVSGRHDMDSLADRYLGHKTVSFEEIAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL   L P++   E L  V+  ++ P++ V+S +E TG+ IDQ
Sbjct: 495 ALEQAAPYAAEDADVTLQLHQALWPRIAESESLKTVFTDIEMPLVPVLSHIERTGVLIDQ 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE   ++L+ E FNLSS KQL  IL+ K K P   KT  G   T
Sbjct: 555 NILAAHSKELAIRLNELENKAHELAEEPFNLSSTKQLQAILYEKQKLPILKKTPGGAPST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN ++ RVHT Y  A T TGR
Sbjct: 615 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPQSGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH++K   L + F 
Sbjct: 674 LSSSDPNLQNIPVRNDEGRRIRQAFIAPKDYIILAADYSQIELRIMAHLSKDEGLLKAFA 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG  +EKVS + RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 734 EGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQRYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYVET+ GRR++  +I S  +  R   ERAAINAP+
Sbjct: 794 DLYFERYPGVLEYMERTRTQASEQGYVETLDGRRLYLPDIKSSNAMRRKGAERAAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMISV   L+       ++++Q+HDELVFEV ++++  AS+ I + ME +
Sbjct: 854 QGTAADIIKRAMISVADWLKQPDAPRARIIMQVHDELVFEVHKDDVEVASEKIRNLMEAS 913

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPLKV++    NW +
Sbjct: 914 ----MTLAVPLKVDVGTGENWDQ 932


>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
 gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
          Length = 951

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 378/995 (37%), Positives = 555/995 (55%), Gaps = 75/995 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRAFYA P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLVLVDGSSYLYRAFYAFPPLTNSL-GEPTGAMYGVLNMLKSLIAQVQ----PTHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+EI+  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T
Sbjct: 61  VFDAKGKTFRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV     L +T+    +D + VI K+GIPPE +V   
Sbjct: 121 LAVQASQQGKNVLISTGDKDMAQLVDDNIMLINTMNNSLLDRDGVIDKYGIPPELIVDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +    
Sbjct: 181 ALMGDSSDNIPGVSGVGEKTALGLLQGIGSMAEIYANLEKVAGLSVRGAKKLGEKLSSAK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS  L  ++T+V + I  + L+L   N  +LI +    EF + +N V +       
Sbjct: 241 ADADLSYLLATIKTNVELDITPDQLVLGQNNQDQLIEYFARYEFKRWLNEVISG------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                     ++  K    E ++D+  T   S+  S   +T KI+               
Sbjct: 295 ---------ESSLTKATQQEIKLDKTQTNSASESKSAVKKTIKID--------------- 330

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413
                    SY  I   + +  W++KL+     +    TD +D   +  + I+ +     
Sbjct: 331 -------RTSYETIDTQEKLNSWLEKLQQADLIAVDTETDALDPMRANLVGISFALTNGE 383

Query: 414 -----LDQKDDTSFKVET-IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIG 466
                L  K       +T +F +   +  Q    KN L KE  L+ LK   EN    KIG
Sbjct: 384 ACYIPLAHKQAVKEMTQTDLFTESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKIG 443

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTRKE---IL 521
            NIKYD  +   + I + G   D ML SYVLDS GR  H++ ++++++L +   E   I 
Sbjct: 444 QNIKYDLTIFANHHIQLNGVCFDTMLQSYVLDSTGR--HNMGALSERYLGHQVIEFESIA 501

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVV 580
              K  +  DKI+ +Q  E+A E++++ ++L  +L  +L     L+ V+  ++ P++ V+
Sbjct: 502 GKGKKQVTFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVL 561

Query: 581 SQMEITGIQID-QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           S ME  G+ ID Q LLKQ S +I++ L +LE+ +Y  +G +FNL+S KQL +ILFTKL  
Sbjct: 562 STMERNGVLIDSQALLKQ-SEKIARRLTALEQQVYQEAGAEFNLASTKQLQEILFTKLAL 620

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P  AKT  G   T    LE +    + + K ++E R L+K+KSTY D LP+ +NK+T RV
Sbjct: 621 PIIAKTPKGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRV 680

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y  A T TGRL+S +PNLQNIPIK + G+ IR+AFI+    K+I+ADYSQIELRI+A
Sbjct: 681 HTSYHQAVTATGRLSSSDPNLQNIPIKNEEGRCIRQAFIARKGYKIIAADYSQIELRIMA 740

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L   F    DIHR  AAEIFG+ + +V+ + RR AK INF +IYG+S F L+ 
Sbjct: 741 HLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMSSFGLSN 800

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I R+ A  Y+  YF R+PG+  ++   +   ++ GYVET+FGRR++  EINS  +  
Sbjct: 801 QLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEINSSNAIR 860

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAP+QG+AADI + AMI++H  ++ + +  +M++Q+HDELVFEV E ++  
Sbjct: 861 RKGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDI--QMIMQVHDELVFEVKENKVDE 918

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            S +I   ME A     +L VPL V+I V +NW E
Sbjct: 919 YSALIKSLMENAA----HLSVPLIVDIGVGDNWDE 949


>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
 gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
          Length = 927

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 365/982 (37%), Positives = 553/982 (56%), Gaps = 73/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G AV I + DKD+ QLV+P   L +T+    +  E V  K+G+PPE ++   
Sbjct: 121 LAKEAAAAGRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I +      K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAELSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L ++      L++  +  EF +       T D +A 
Sbjct: 241 EVAYLSYQLATIKTDVELELSHDRLEVQQPQADELLALFRQYEFKRW------TSDVEAG 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                      +  K  A  TE          +  +LS                      
Sbjct: 295 KWL-------QSRGKPAAKPTETIVVEAEPEEEAVALS---------------------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                  ++ Y  I++ + +Q W+++++     +    TD++D   +  + I+ +T +  
Sbjct: 326 -------SERYVTILDEETLQAWIERIKNAPVVAVDTETDSLDNLTANLVGISFAT-EPG 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+D          +L  LK   E+E  +K+G N+K+D+ +L 
Sbjct: 378 LAAYIPVAHDYLDAPDQLSRD---------RVLELLKPLLEDESLVKVGQNLKFDRGILQ 428

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+LDS    HD+ S++ +WL +T    ++I    K+ +  ++I
Sbjct: 429 NYGIELRGIAFDTMLESYILDSVSGRHDMDSLSSRWLKHTTITFEQIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V LQL L + PKL   K  L+++E ++ P++ V+S++E  G++ID 
Sbjct: 489 DLEQAGRYAAEDADVTLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDP 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI+  L  LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 AVLHAHSQEIALKLTELEQKAHEIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K IL++R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 609 SEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E VS + RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 728 EGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +IN+  ++ R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLEYMERTRKQAKEQGYVETLDGRRLYLPDINASNAARRAGAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   KM++Q+HDELVFEV ++++   SQ I   ME + 
Sbjct: 848 QGTAADIIKRAMIAVDGWLQKEQPRVKMIMQVHDELVFEVHKDDVEAVSQKIHELMENS- 906

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L VPL V +    NW E
Sbjct: 907 ---MQLDVPLLVEVGSGVNWDE 925


>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
 gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
          Length = 928

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 365/985 (37%), Positives = 556/985 (56%), Gaps = 76/985 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H A
Sbjct: 5   QENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAA 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I 
Sbjct: 60  VVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVRAMGLPLLAVSGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++  
Sbjct: 120 TLAREAEKVGRPVLISTGDKDMAQLVTPGITLINTMTNTVLGPDEVVTKYGVPPELIIDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I +      K     + + 
Sbjct: 180 LALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDVLYAQPEKIAELSFRGAKTMAAKLEQN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS +L  ++TDV +    E L ++      L+   K  EF +    V +     A
Sbjct: 240 KEVAYLSYQLATIKTDVALEQSCEQLEVQPPAADTLVELFKKYEFKRWTTDVESGKWLQA 299

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +P          K +A     +    + ++                           
Sbjct: 300 KGGKPAA--------KPVAAPVVEEDAEEVVSA--------------------------- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 ++ + Y  +++ + ++ W++KL+     +F   TD++D   +  + +       
Sbjct: 325 ------LSAEHYVTVLDEETLKSWIEKLKKAPLFAFDTETDSLDNHSANMVGL------- 371

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
               SF  E   +   V  + D  G    +++E  L  LK   E+E  LK+G N+KYD+ 
Sbjct: 372 ----SFACEP-GVAAYVPVAHDYIGAPEQISRERALELLKPLLEDEKALKVGQNLKYDRG 426

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           +L  YGI +RG   D ML SY LDS    HD+ S++++WL +   T +EI    K+ +  
Sbjct: 427 ILANYGIELRGIAWDTMLESYTLDSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLTF 486

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I   Q   +A E+++V LQL L + PKL   E  L+V+  ++ P++ V+S++E  G++
Sbjct: 487 NQIDLEQAGRYAAEDADVTLQLHLKMWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVK 546

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID  +L++ S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G 
Sbjct: 547 IDPQVLQKHSEEITLRLAELEQKAHDIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGA 606

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T 
Sbjct: 607 PSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTA 665

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L +
Sbjct: 666 TGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLK 725

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAE+FG+ +E VS + RR AK INF +IYG+S F L+ QL IPR E+ 
Sbjct: 726 AFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQ 785

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAIN
Sbjct: 786 KYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAAAERAAIN 845

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI +RAMI+V   L++ +   +M++Q+HDELVFEV ++ +   S+ I   ME
Sbjct: 846 APMQGTAADIIKRAMIAVDAWLQEEQPRVRMIMQVHDELVFEVHKDALDAVSKKIHELME 905

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            +    + L VPL V +   +NW +
Sbjct: 906 SS----MALDVPLLVEVGSGDNWDQ 926


>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
 gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
          Length = 924

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 345/977 (35%), Positives = 549/977 (56%), Gaps = 63/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLSNAQ-GEPTGALFGVVNMLRSTLKER-----PAYVAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
            D P  TFR+++Y  YKANRP +P+ L  Q+ P+ R+  +A GI  + I G EADD+I T
Sbjct: 56  VDAPGKTFRDDLYDQYKANRPPMPDELRSQVEPMCRI-VEALGISILRIPGVEADDVIGT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCL 182
                  +   VTI + DKD  QLV P   L +T+   ++D +  V+ K+G+  ++++ L
Sbjct: 115 LALQGLAQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMDKFGVRADQIIDL 174

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTAA  L EY +L+ ++  A  +K K   EN+    E   L
Sbjct: 175 LALMGDTVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIG-ENLRAALERLPL 233

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +R+LV +RTDV +      L L + + P L        FT+ +  +        A  E  
Sbjct: 234 NRELVTIRTDVALDASPTTLALREQDVPELTELYTRYGFTQALKELGAPLPAPTAASE-- 291

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                T   +G A             + F+  S +     +              L    
Sbjct: 292 ----ATPSLRGTA-------------AGFARGSAEAPAAGT--------------LDPAL 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  ++ T+ +Q WV++L+     SF   TD +DA  ++ + ++++    +     
Sbjct: 321 AAPGEYETVLTTEQLQTWVERLQQAELISFDTETDALDAMRARLVGVSLAVEPGR----- 375

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                +I +  H    +  +  + +++L  L+   ++    K+G + KYD  VL R+G+ 
Sbjct: 376 ---AAYIPVG-HDYPGAPAQLPM-QQVLDALRPVLQDPAKKKLGQHGKYDLHVLRRHGVD 430

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           ++G+ +D ML S+VL+S  + HD+ S+A ++L Y+    +++       IP  ++   + 
Sbjct: 431 VQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQIPFSQVGIDEA 490

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L   L+P+L+ E  L  VY  ++ P++ V++ +E  G++ID D L++
Sbjct: 491 SRYAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANGVRIDTDELRR 550

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S ++S  +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  + L
Sbjct: 551 QSQDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEAL 610

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E I    + + + ILE+R L+K++STY D LP  +N  T RVHT Y  +   TGRL+S +
Sbjct: 611 EAI-AEQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQSGAATGRLSSSD 669

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G++IRRAF++P   +L++ADYSQIELRI+AH+++   L + FE   D+
Sbjct: 670 PNLQNIPIRTEDGRRIRRAFVAPEGCQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADV 729

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG  +E+V+P  RR AK INF ++YG+S F LA  L I R +A DY+  YF 
Sbjct: 730 HRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFS 789

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ +++E+ +   R  GYVET+FGRR++ ++I++    +R   ERAAINAP+QG+AA
Sbjct: 790 RYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAA 849

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAM+ V + L D     +M+LQ+HDELVFE     +      +V  M +A      
Sbjct: 850 DIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERMSQAA----K 905

Query: 958 LRVPLKVNIKVSNNWQE 974
           LRVPL V+  + +NW E
Sbjct: 906 LRVPLVVDTGIGSNWDE 922


>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
 gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
          Length = 931

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 363/983 (36%), Positives = 548/983 (55%), Gaps = 71/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPETMSNGD-IPTNAVYGVVNMLRSMM----RQFSSDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A + G  V I + DKD+ QLV     L +T+    +D + V++K+GIPPE ++   
Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G+LE +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTAKALLQGIGSLEKLYENLDDIAPLGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +    D  ++
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKNEPNKDELIKLYGQLVFKSWLNEL---LDGGSS 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E         E  G A+               S+ S  T ++++              
Sbjct: 298 VVE-------ADEKSGAAVS--------------SAKSTSTVEMDT-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +T ++ 
Sbjct: 323 -SAVTIDRSQYETILDEATFNTWLEKLKAADVFAFDTETDSLDYMVANLVGLSFAT-EEG 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E++   K+G N+KYD  VL 
Sbjct: 381 VAAYVPVAHDYLDAPQQLDRDW---------VLAQLKPILEDDTQAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RY I M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 432 RYNIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +   E+L  +YE ++ P++ V+S++E TG+ ID 
Sbjct: 492 ELDQASPYAAEDADVTLRLHNRLMANIEKDEQLKAIYEEIEVPLVPVLSRIERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI++ L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 552 MKLAAQSQEIAQRLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ D G++IR+AFI+P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 671 LSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQ 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G  I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY+
Sbjct: 731 QGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 791 NTYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  +T     +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVQESALTEIESKVQQLMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL       +NW +
Sbjct: 911 AA----LDVPLVAEAGHGDNWDQ 929


>gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
          Length = 914

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 365/983 (37%), Positives = 538/983 (54%), Gaps = 91/983 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    R++   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTS-TGKPTGAVKGVLNMLLSL----RRQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ ++ +YK++RP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 61  AKGPTFRDALFENYKSHRPPMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
                G  V I + DKD+ QLV P   L +T+     DIE V  K+G+ PE ++   AL 
Sbjct: 121 QCAALGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDIEGVKAKFGVGPELIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIK------QKKRRENILEYAET 239
           GD +DNIPG+PG+G KTA  LL    G L+ +  +  ++        K     + E+ + 
Sbjct: 181 GDKVDNIPGVPGVGEKTACGLLNGIPGGLKGLYEHLDQVAGLPIRGAKSLGAKLEEHRDA 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S +L  ++ DV + + +  L+  + +   LI+  + LEF + ++ +         N 
Sbjct: 241 AFMSYELATIKIDVALDVEVGDLMPGEPHREALIALYRELEFKQWLDELLREAKAAGENC 300

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E         + +G +I+ E         +Q+ +L +Q                      
Sbjct: 301 E--------VQPEGCSIQAE---------AQYETLLEQA--------------------- 322

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                           D ++W+ +L+     +F   T ++DA  ++ + +          
Sbjct: 323 ----------------DFERWLARLKAAECFAFDTETTSLDAQRAELVGV---------- 356

Query: 420 TSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            SF VE     ++ L  H+      +  L   +L  LK   E+    KI  + KYD  VL
Sbjct: 357 -SFAVEPGQAAYVPLR-HSYMGVPQQLELDA-VLGALKPLLEDPAKTKICQHGKYDMNVL 413

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
             YGI MRG   D ML SYVLD+  + HD+ S+A K+L       ++I       +  D+
Sbjct: 414 MHYGIEMRGMAFDTMLESYVLDATATRHDMDSLALKYLGRGTIRFEDIAGKGAKQLTFDQ 473

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I+  Q   +A E+++V L+L   L  KL     LL V   ++ P++ V++++E  G  +D
Sbjct: 474 IAIEQAGPYAAEDADVTLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVD 533

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LL Q S E+   L+ LE   +D++GE+FNL SPKQL  IL+ KL  P  +KT  GQ  
Sbjct: 534 AQLLGQQSVELGDKLVQLEREAFDIAGEEFNLGSPKQLCAILYDKLGCPVISKTAGGQPS 593

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    L ++   D P+ K I++ R LSK+K TY D LP  IN RT R+HT Y  A T TG
Sbjct: 594 TAESVLAELAEQDYPLPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATG 653

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+T  G++IR+AF++ P  KL++ADYSQIELRI+AH+A+   L   F
Sbjct: 654 RLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAF 713

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +N LD+HR  AAE+FGV +E+VS   RR AK INF +IYG+S F LA Q+ + R EA +Y
Sbjct: 714 QNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDVGRKEAQEY 773

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF R+PG+  Y+E+T+    + GYVET+FGRR++  EINS   ++R   ER AINAP
Sbjct: 774 IDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTAINAP 833

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI+V   L+D  L  +++LQ+HDELV EV E+ +    + I   M  A
Sbjct: 834 MQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELVLEVREDLVEQVREAICPLMSGA 893

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL V   V N+W E
Sbjct: 894 A----QLDVPLLVEAGVGNSWDE 912


>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
 gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
          Length = 933

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 373/983 (37%), Positives = 551/983 (56%), Gaps = 69/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P +   G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRTQIEPLHKMVKAMGLPLLVTPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE  G  V I + DKD+ QLV+P   L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LALEAEMAGHPVLISTGDKDMAQLVTPNVTLINTMNNTVLGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+ +  N   I        K     + +  
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGRLDVLYDNLGSIATLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++T+V + +    L +   +   L    K  EF + +  V T      A
Sbjct: 241 EIAYLSYKLATIKTNVELEVSYADLNMSAPDIDVLQQLFKRYEFKRWLADVET-----GA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E           KG  ++T        K++  S+++++         PQ         
Sbjct: 296 WLE---------NKKGSGVKTA----GVAKSA--SAVAEKPKAAAEAMLPQ--------- 331

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                   DSY  I++      W+Q+L+     +F   TD +D   +  I ++ + +   
Sbjct: 332 --------DSYVAILDEDTFVDWLQRLKKANVFAFDTETDGLDTLSANLIGLSFA-IAPG 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      + S         +L  LK   E+E  LK+G N+K+D  VL 
Sbjct: 383 EAAYLPVAHDYLDAPAQLDRAS---------VLERLKLLLEDEKVLKVGQNLKFDMGVLA 433

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RYGI++RG   D ML SYVLDS    HD+ ++A ++L +   T +EI    K+ +  ++I
Sbjct: 434 RYGINLRGIAYDTMLESYVLDSVGGRHDMDNLADRYLGHKTITFEEIAGKGKNQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           + +Q   +A E+++V L+L L + P+L    +LL V+  +D P++ V+S +E TG+ ID 
Sbjct: 494 ALAQAALYAAEDADVTLRLHLAMWPQLKQSAELLRVFNEIDMPLVPVLSHIERTGVLIDP 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++K L  LE   ++L+GE FNL S KQL  IL+ K K P   KT  G   T
Sbjct: 554 AILSVHSQELTKRLGELEIQAHELAGEPFNLVSLKQLQAILYEKQKLPVLKKTPGGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+K+TY D LP  IN  + RVHT Y  A T TGR
Sbjct: 614 NEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D  ++IR+AFI+P   ++++ADYSQIELRI+AH+++   L + F 
Sbjct: 673 LSSSDPNLQNIPVRNDEDRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQDAGLLKAFA 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FGV ++KV+ + RR AK INF +IYG+S F LA QL +PR EA  Y+
Sbjct: 733 EGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIYGMSAFGLARQLGVPRGEAQRYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF R+PG+ +Y+E+T+    + GYV T+ GRR++  +  S     R   ERAAINAP+
Sbjct: 793 DRYFERYPGVLDYMERTRQQAAEQGYVTTLDGRRLYLPDARSSNGMRRKAAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI V   +++  +   +M++Q+HDELVFEV E  I  +SQ I   ME +
Sbjct: 853 QGTAADIIKRAMIEVDAWIQEQGQPLVRMIMQVHDELVFEVHESVIDASSQRIRELMEGS 912

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPLKV++ V  NW E
Sbjct: 913 ----MALAVPLKVDVGVGANWDE 931


>gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638]
 gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638]
          Length = 930

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 365/981 (37%), Positives = 552/981 (56%), Gaps = 72/981 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    GLP  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GLPTGAMYGVLNMLRSLILQYQ----PSHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKLGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVATKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I     R        + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTIAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +  E L ++      L+   K  EF + I  V       A 
Sbjct: 241 EVAYLSYKLATIKTDVELELTCEQLEVQQPIAEELLGLFKQYEFKRWITDVEAGKWMQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                    +DT +  ++     + T+                  
Sbjct: 301 GSKPAA----------------KPKDTIVVDAEDEVEEEATT------------------ 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D+Y  ++    +  WV+KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 327 -----LSYDNYEVVLEESQLIAWVEKLKKAPVFAFDTETDSLDNISANMVGLSFAT-EPG 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 V   ++D            N +++E +L  LK   E+E   K+G N+K+D+ +L
Sbjct: 381 MAAYVPVAHDYLD----------APNQISRERVLELLKPLLEDEKAKKVGQNLKFDRGIL 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
             YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T +EI    K+ +  ++
Sbjct: 431 QNYGIELRGIAYDTMLESYILNSVAGRHDMDSLSDRWLKHKTVTFEEIAGKGKNQLTFNQ 490

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I+  +   +A E+++V LQL L + PKL   E  L+V+E ++ P++ V+S++E  G++ID
Sbjct: 491 IALEEAGRYAAEDADVTLQLHLKMWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKID 550

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L + S E++  L  LE+  ++++GE FNLSS KQL  ILF K       KT  G   
Sbjct: 551 PAVLHKHSEELALRLSELEQKAHEIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPS 610

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + LE++   D P+ K IL++R L+K+KSTY D LP  IN +T RVHT Y  A   TG
Sbjct: 611 TSEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATG 669

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F
Sbjct: 670 RLSSTEPNLQNIPVRNEEGRRIRQAFIAPKDYLIVSADYSQIELRIMAHLSRDKGLLTAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAE+FG+ ++ V+   RR AK INF +IYG+S F L+ QL IPR E+  Y
Sbjct: 730 AEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKY 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP
Sbjct: 790 MDLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDITSSNAARRAGAERAAINAP 849

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI+V   LE  K   +M++Q+HDELVFEV  E++   S+ I   ME +
Sbjct: 850 MQGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELVFEVHHEDLEAVSKKIHELMEGS 909

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               + L VPL V +    NW
Sbjct: 910 ----MTLDVPLLVEVGSGENW 926


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 370/987 (37%), Positives = 548/987 (55%), Gaps = 84/987 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   L LVDGSSF++RAF+A P L+   DG P  AI G  NML KL    R+E      A
Sbjct: 21  KSKSLILVDGSSFLFRAFHALPPLTAP-DGTPTGAIHGVINMLQKL----RREENPDRMA 75

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD P  TFR+E+YP+YKA RP +P+ L  Q+  V    +A G P + + G EADD+I 
Sbjct: 76  VVFDAPGPTFRDELYPEYKAQRPPLPDDLRVQIEPVHELVRALGFPLLCVSGVEADDVIG 135

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + A + G +V + + DKD  QLV+    L +T+    +D   +  K+GI   + +  
Sbjct: 136 TLMHQARQNGESVLVATADKDFAQLVTEGIRLVNTMTNTVLDEAAIEAKYGITAAQFIDY 195

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L GD++DN+PG+PG G KTAA  L E+ +L+N++ +A +IK K   E++    E   +
Sbjct: 196 LTLVGDTVDNVPGVPGCGPKTAAKWLNEWQSLDNLMAHADQIKGKVG-ESLRAAKEFLPI 254

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
            R+LV +RTD  + I L  L +E+                          D DA      
Sbjct: 255 GRELVTIRTDCDLPIALADLAVEEP-------------------------DVDAVRALAE 289

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
              +NT                     QFS  S   + ++   TP +          Q P
Sbjct: 290 KFGLNTLRR------------------QFSEASSVPAPVS---TPSQETRRTSSDDGQLP 328

Query: 363 INNDS-YTKIVNTKDIQQWVQKLET--------IGSASFKIITDTMDAFHSKPIAIAIST 413
           +++   Y  I+   D Q+W+++++         +   +F   TD++D F  + + ++ S 
Sbjct: 329 LSDPPMYETILTDADWQRWLEQIKNADKKTDKKMDWVAFDTETDSLDLFAGRIVGVSFSI 388

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYD 472
            D +          ++ L+ H    +  +  L ++ +L+ LK + E+    K+  N K+D
Sbjct: 389 EDNR--------AAYVPLA-HNYPGAPAQ--LDRDTVLADLKPWLEDASRTKVMQNAKFD 437

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSI 528
             +L  +GI++RG   D ML SYVLDS  + HD+ S+A K+L   + T ++I      ++
Sbjct: 438 SHMLANHGITLRGVLFDTMLESYVLDSTATRHDMDSLAAKYLGRSTITFEDIAGKGAKAL 497

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
              +I   Q   +A E+++V  QL   L PKL VE  L  VYE +++P+I+V+  ME  G
Sbjct: 498 SFPEIHLEQAGPYAAEDADVTGQLQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAG 557

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           +++D+  L      I + + ++E+  +  +G +FNL S KQL ++LF +LK P G KT  
Sbjct: 558 VRVDRGELAIQGKAIGERIAAVEQAAFKEAGREFNLGSTKQLKELLFDELKLPVGKKTPK 617

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G+  T  + L ++  G +P+   IL++R LSK+KSTY D LP  I+  T RVH+ +  A 
Sbjct: 618 GEPSTDEEALGEL-VGSHPLPALILDYRGLSKLKSTYIDRLPEDIHTHTGRVHSAFHQAV 676

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+++ G++IR+AF++ P  KLISADYSQIELRI+AH+++   L
Sbjct: 677 TATGRLSSSNPNLQNIPIRSEEGRRIRQAFVADPGCKLISADYSQIELRIMAHLSEDERL 736

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAE+FGV   +VS   RR AK INF +IYG+S F LA QL +PR E
Sbjct: 737 CAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINFGLIYGMSAFGLAKQLDVPRGE 796

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+ +Y+E+ +   RQ GYVET+FGRR++  EI+S     R   ER A
Sbjct: 797 AQAYIDLYFARYPGVAKYMERMRQQARQMGYVETVFGRRLYLPEIHSRNGQRRQYAERTA 856

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI + AMI++HK L     A +M+LQ+HDEL+FEVPE ++     II   
Sbjct: 857 INAPMQGTAADIIKIAMIALHKLLVVPGRA-RMILQVHDELIFEVPESDVAEIEPIIRAQ 915

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M  A      L VPL+V I +  +W E
Sbjct: 916 MTGAA----KLNVPLEVGIGIGRSWAE 938


>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
 gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
          Length = 930

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 369/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P NA+ G  NML +L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPSLTNAA-GEPTNAMYGVLNMLKRLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRNE++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRNEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    TTE               +K +Q+ + S   S +  E TP      ++Q  
Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENTP------KIQ-- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D +  T + ST         L+ +K   EN    KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPDIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           +GI ++G E D ML+SY L+S GR  H++  +A+++L +     + I    K+ +  ++I
Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L   S EI+  L +LEE  Y+L+G+ FNL+S KQL +ILF KL  P   KT  G   T
Sbjct: 553 NALFMQSNEIATRLTALEEQAYELAGQPFNLASTKQLQEILFDKLGLPILQKTPKGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGR
Sbjct: 613 NEEVLEEL-AYSHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F 
Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+
Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLDISRPDAKKYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+
Sbjct: 792 DLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A 
Sbjct: 852 QGTAADIIKRAMIKLDEVIY-HDPDIEMIMQVHDELVFEVRSEKVEFFREQIKQQMEDAS 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V + V  NW E
Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928


>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
 gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
          Length = 930

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 368/982 (37%), Positives = 558/982 (56%), Gaps = 72/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    TTE               +K +Q+ + S   S +  E TP      ++Q  
Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENTP------KIQ-- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+  W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 329 ----IDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            T   ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 ATYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           +GI ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  ++I
Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T
Sbjct: 553 DALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGR
Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F 
Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+
Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+
Sbjct: 792 NLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A 
Sbjct: 852 QGTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHMESAA 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V + V  NW E
Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928


>gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220]
 gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 364/982 (37%), Positives = 555/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GAPTGAMYGVLNMLRSLILQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEY-A 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I     +  K     LE   
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKNMAGKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF + +  V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVKQPIADELLGLFKQYEFKRWVADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T                                I  E TP++        
Sbjct: 301 GAKPAAKPQET--------------------------------IVVEATPEE-------- 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D+Y  I++   +++W+ KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 321 -PATALSYDNYVTILDEATLEEWIAKLKKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+D           L+ LK   E+E+  K+G N+KYD+ +L 
Sbjct: 379 VAAYVPVAHDYLDAPDQISRDRA---------LALLKPLLEDENAHKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            Y I +RG   D ML SY+L+S    HD+ S++ +WL +   T +EI    K+ +  ++I
Sbjct: 430 NYDIELRGIVFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E +D P++ V+S++E  G++I  
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E++  L  LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEELTLRLNELEQKAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  INK+T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++ + S+ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKIHQLMEN-- 906

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
             + ++ VPL V +    NW +
Sbjct: 907 --ETHIDVPLLVEVGSGENWDQ 926


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 363/983 (36%), Positives = 544/983 (55%), Gaps = 74/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL         SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLAQYNP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDELRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G +V I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LALEAEKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPEEVEQKYGVPPALIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           A+ GDS DNIPG+PG+G KTA  LLQ  G+++ I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADLGFRGAKTMATKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +P E L + + N   L +     EF + ++ +         
Sbjct: 241 DVAFLSYQLATIKTDVELALPCEELTVTEPNVEALQTLFSRYEFKRWLSDLQDGKWLQGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                    NT   K ++       D  +   + SS+                       
Sbjct: 301 KS-------NTQAQKALS-------DEPVAVPETSSV----------------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                +  ++Y  I++      W++KL+     +F + TD +D   +  + I+ + +   
Sbjct: 324 -----LPTENYVTILDQDLFDSWLEKLKNSEVFAFDLETDALDTLSANIVGISFA-IAPG 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      + +         +L+ LK   E++   K+G N+KYD+ VL 
Sbjct: 378 EAAYLPVAHDYLDAPEQLDRAA---------VLAQLKPLLEDDSAWKVGQNLKYDRGVLK 428

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            Y I + G + D ML SY+L+S    HD+ S+A +WL++   T +EI    K+ +  ++I
Sbjct: 429 NYDIELAGIKFDTMLESYILNSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L  E     V+E+++ P++ V+S++E  G+ IDQ
Sbjct: 489 ALEQASHYAAEDADVTLQLHLKMWPELEKEAGPRKVFEQIEMPLLTVISRIERNGVLIDQ 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q S E++  L  LE   ++L+GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 AILAQHSKELTARLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPLSGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AF++    ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSADPNLQNIPVRNDEGRRIRQAFVAAKGYRIVAADYSQIELRIMAHLSQDKGLLDAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FGV ++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 728 QGEDIHRATASEVFGVPLDKVSAEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E T+      GYVETI GRR+   +I S  +  R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLRYMENTRQLAASKGYVETIEGRRLWLPDIKSSNAIRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   LE     + +M++Q+HDELVFEV  E +  ASQ I   ME +
Sbjct: 848 QGTAADIIKRAMIAVDAWLEQQNDNSVRMIMQVHDELVFEVKAEAVEAASQKIRALMEGS 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPL V + V +NW E
Sbjct: 908 ----VQLDVPLLVEVGVGDNWDE 926


>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
 gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
          Length = 930

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 366/982 (37%), Positives = 559/982 (56%), Gaps = 72/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P +A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTSAMYGVLNMLKSLISQVQP----THIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    TTE               +K +Q+ + S   S +  E TP      ++Q  
Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENTP------KIQ-- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL +    +    TD++D   +  + I+ + L+  +
Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNSHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           +GI ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  ++I
Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T
Sbjct: 553 DALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGR
Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F 
Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLISAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+
Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+
Sbjct: 792 NLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A 
Sbjct: 852 QGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V + V  NW E
Sbjct: 911 ----ELVVPLIVEVGVGKNWDE 928


>gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus influenzae 10810]
          Length = 935

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 368/985 (37%), Positives = 558/985 (56%), Gaps = 73/985 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEHYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NAALSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVMNGSDSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS---EQTPQKLFLERL 355
                    TTE               +K +Q+ + S   S + +   E TP      ++
Sbjct: 300 --------QTTEQP-------------VKINQYQATSPAQSSVGNSAVENTP------KI 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q      I+   Y  ++   D+ +W++KL T    +    TD++D   +  + I+ + L+
Sbjct: 333 Q------IDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LE 385

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +
Sbjct: 386 NGEAAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESI 436

Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
             R+GI ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  
Sbjct: 437 FARHGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTF 494

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I   Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ 
Sbjct: 495 NQIPLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVL 554

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G 
Sbjct: 555 IDSDALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGA 614

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T 
Sbjct: 615 PSTNEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTA 673

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L  
Sbjct: 674 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLIN 733

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A 
Sbjct: 734 AFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQ 793

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AIN
Sbjct: 794 KYMDLYFQRYPSVQQFMTDIREKAKTQGYVETLFGRRLYLPDINSSNAMRRKGAERVAIN 853

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME
Sbjct: 854 APMQGTAADIIKRAMIKLDEVIH-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHME 912

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL V + V  NW E
Sbjct: 913 SAA----ELVVPLIVEVGVGQNWDE 933


>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
 gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
          Length = 944

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 358/998 (35%), Positives = 565/998 (56%), Gaps = 83/998 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 3   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 58  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T T  A +EG    + + DKDL QLV+    L +T+  E +D   V+ K+G+PPEK+V 
Sbjct: 118 GTLTERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPEKIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAET 239
             +L GD++DN+PG+P +G KTA   L EYG+L+N++  A  IK    +   N L++   
Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLGEYGSLDNVIARAGEIKGVVGENLRNTLDWLPK 237

Query: 240 AR--LSRKL-VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            R  L+ K+   L T+VP    LE L+    +  +L+ F     F   +   A       
Sbjct: 238 GRELLTVKIDCDLATEVPT---LEALVDGGEDRAKLVDFFSRYGFKTWLREAAGE----- 289

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLE 353
                    +  T + G A      R       Q++   +   Q S  + E  P ++   
Sbjct: 290 --------SLPDTRSVGAA------RKAATPVKQYAPEAAAQQQASLFDVETPPAEV--- 332

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  +     ++ W++ L+T+        T ++D   ++ + I++S 
Sbjct: 333 -------------KYETVTTEAQLESWMRLLDTVELVCIDTETTSIDPMLAQLVGISLSV 379

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKE-ILSYLKKFFENEHFLKIGHNI 469
                      +  +I ++ H   D +G +    L++E +L+ +K + E+E   K+G ++
Sbjct: 380 QPG--------QACYIPVA-HRGPDVSGLDNAAQLSREAVLARMKLWLEDETRKKVGQHL 430

Query: 470 KYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRK 525
           KYD  V   +GI++RG   D ML SYVL S R+ H + ++A++ L   + T +E+     
Sbjct: 431 KYDAHVFANHGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGA 489

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQME 584
           + I  D+++  +  E+A E++++ L+L   L PK+  + KL +VYE+++ P   V+ +ME
Sbjct: 490 AQIGFDEVALDRATEYAAEDADITLRLHRALYPKVTEDDKLRYVYEQIEMPTSIVLQKME 549

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G+ +D + L + SAE+ + LL LE+  + L+G+ FNL+SPKQ+G++ FT+LK P   K
Sbjct: 550 RNGVLVDAERLARQSAELGQRLLELEQQAFALAGQPFNLNSPKQIGELFFTQLKLPVVKK 609

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T +G   T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y 
Sbjct: 610 TASGAPSTDEEVLQKL-AEDYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYG 668

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A+ +TGRLAS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH+++ 
Sbjct: 669 QATAVTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSED 728

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I 
Sbjct: 729 EGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIG 788

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A  YI RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   E
Sbjct: 789 RDAAKLYIDRYFARYPGVARYMDETRQVAHERGYVETVFGRRLWLPDINGGNGPRRQAAE 848

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEE 936
           RAAINAP+QG+AAD+ + +M++V   LE    A        T++++Q+HDELV EVP++E
Sbjct: 849 RAAINAPMQGTAADLIKLSMLAVQDWLEGSPNAGKPGVPMRTRLVMQVHDELVLEVPQDE 908

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +    + +   M        +LRVPL   + V +NW+E
Sbjct: 909 LARVRERLPELMCDVA----SLRVPLVAEVGVGSNWEE 942


>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
 gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
          Length = 930

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 366/983 (37%), Positives = 547/983 (55%), Gaps = 72/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    + IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + +   LI     L F   +N +         
Sbjct: 241 DNAVLSYELATIKLDVELKETPESLLKTEPSIDELIKLYGQLTFKSWLNELLE------G 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V  D +T   +G +  +E+D DT                                 
Sbjct: 295 GTGVVEADESTGVVRGGSASSELDMDT--------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W+ KL+     +F   TD++D   +  + ++ +T D+ 
Sbjct: 322 -SAVKIDRSQYQTILDEASFYTWLDKLKASDLFAFDTETDSLDYMVTNLVGVSFAT-DEG 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 380 VAAYVPLAHDYLDAPQQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLA 430

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQ 592
             ++   +A E+++V L+L   L   +  +K L  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 491 DLNEAAPYAAEDADVTLRLHNRLAANIEQDKKLKAVYEEIEMPLVPVLSRIERTGVLIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 551 MKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 730 DGKDIHTATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E+H     K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 850 QGTAADIIKKAMLLVGRWIEEHGDGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L+VPL  +    +NW +
Sbjct: 910 A----ELKVPLVADAGHGDNWDQ 928


>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
 gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Vibrio fischeri ES114]
          Length = 932

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 362/983 (36%), Positives = 549/983 (55%), Gaps = 70/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N   LVDGSS+++RA++A P  +   DG P  A+ G  NML  LL+    + IA    V
Sbjct: 6   DNPFILVDGSSYLFRAYHAAPNFTNG-DGQPTGAVYGVINMLRSLLKQFETDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRN++YP+YKANRP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  IFDAKGKTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+    +D E V++K+GI PE ++   
Sbjct: 121 LASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L+ +  +   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    E  + ++ N   LI     + F + +  +    D    
Sbjct: 241 EGAYLSYELATIKLDVELDKTPEEFVKQEPNVDELIQMFGQMNFKRWLTEMLDGSDGKIV 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + E     ++T+  +  A E E+     +  S++ +                        
Sbjct: 301 SHETSSNSVSTSSKQDDA-EEELIVAAQVDRSKYET------------------------ 335

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        I+  +    W+ KL     A+F   TD++D   +  I ++ + +++ 
Sbjct: 336 -------------ILTKEAFSVWLDKLNNADVAAFDTETDSLDYMVANLIGLSFA-VEEG 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L  LK + E+++  K+G N+KYD  VL 
Sbjct: 382 EAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPYLEDDNKAKVGQNLKYDASVLA 432

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I M+G + D ML SYV +S    H++ S+A ++L +   + +EI    K  +  ++I
Sbjct: 433 RYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E++++ L+L  +L  KL   EKL  V+  ++ P++ V+S+ME  G+ ID 
Sbjct: 493 ALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDD 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI + L  LE+  ++++GE+FN++SPKQL  ILF K++ P   KT +G   T
Sbjct: 553 MLLSAQSVEIGQRLDELEKAAFEVAGEEFNMNSPKQLQTILFEKMELPVIKKTPSGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAE+ GV+IE+V+ + RR AK INF +IYG+S F LA Q+ IPR EA DY+
Sbjct: 732 AGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    + GYVET++GRR+H  EIN+     R   ERAAINAP+
Sbjct: 792 NVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI V + +E + K    +L+Q+HDELVFEV E+ +   +  +   ME+A
Sbjct: 852 QGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEVTTKVRELMEQA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL       NNW E
Sbjct: 912 A----QLDVPLVAEAGFGNNWDE 930


>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
          Length = 930

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 368/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----THIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    TTE               +K +Q+ + S   S +  E TP      ++Q  
Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENTP------KIQ-- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+  W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 329 ----IDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            T   ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 ATYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           +GI ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  ++I
Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T
Sbjct: 553 DALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGR
Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F 
Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+
Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+
Sbjct: 792 DLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A 
Sbjct: 852 QGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V + V  NW E
Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928


>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
 gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
          Length = 932

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 363/983 (36%), Positives = 543/983 (55%), Gaps = 70/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    + IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LASQASKAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G++E +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A +S +L  ++ DV +    E L+    N   LI     L F   +N +         
Sbjct: 241 DNAEMSYQLATIKLDVELEETPESLVKTQPNTDELIKLYGQLVFKSWLNEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E     +   E  G A         +  TS  S++   TS +                
Sbjct: 292 -LEGGTGVVEADEKSGAA--------RSSGTSATSTVEMNTSAVT--------------- 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I++ +    W++KL+     +F   TD++D   +  + ++ +T ++ 
Sbjct: 328 -----IDRSKYETILDEETFNAWLEKLKAAEVFAFDTETDSLDYMVANLVGLSFAT-EEG 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 382 VAAYVPVAHDYLDAPQQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDMSVLA 432

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 433 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +YE ++ P+I V+S++E TG+ +D 
Sbjct: 493 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKAIYEEIEVPLIPVMSRIERTGVFVDD 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 553 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGSPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++    K+++ DYSQIELRI+AH++    L + F+
Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GVNIE V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 QGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + G+VETI+GRR+H  EI S     R   ERAAINAP+
Sbjct: 792 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 852 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESSLAEIESKVQELMESA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL       +NW +
Sbjct: 912 A----ELEVPLVAEAGHGDNWDQ 930


>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
 gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
          Length = 930

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 368/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----THIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    TTE               +K +Q+ + S   S +  E TP      ++Q  
Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENTP------KIQ-- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+  W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 329 ----IDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            T   ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 ATYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           +GI ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  ++I
Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T
Sbjct: 553 DALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGR
Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F 
Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+
Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRLDAQKYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+
Sbjct: 792 DLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A 
Sbjct: 852 QGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V + V  NW E
Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928


>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
 gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
          Length = 930

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 368/982 (37%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPSLTNAA-GEPTGAMYGVLNMLKNLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    TTE               +K +Q+ + S   S +  E TP      ++Q  
Sbjct: 300 --------QTTEQP-------------VKINQYQATSQDQSAV--ENTP------KIQ-- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+  W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 329 ----IDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           +GI ++G E D ML+SY L+S GR  H++  +A+++L +     + I    KS +  ++I
Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESIAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T
Sbjct: 553 DALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGR
Sbjct: 613 NEEVLEEL-AYSHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F 
Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+
Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+
Sbjct: 792 DLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A 
Sbjct: 852 QGTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V + V  NW E
Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928


>gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341]
 gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341]
          Length = 938

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 361/985 (36%), Positives = 554/985 (56%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  +++    + IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMVRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L ++  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLNDLYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    + L+ +  +   L++    L F   +  +         
Sbjct: 241 DNATLSYQLATIKCDVELAESPQTLLKQTPDRDALMALYGKLAFKAWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T     +A + +    +   ++  S+     + I +    Q         
Sbjct: 292 ------LDGGTGV---VAADEQAKASSMTSSNSASNAVSHAAVIPASPAAQ--------- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D   W++KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 334 -----IDRSQYQTILNEQDFNLWLEKLQQADLFAFDTETDSLDYMVANLVGVSFAVAEG- 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  E  +I ++ H   D+  +      +++ LK   E+E+  K+G N+KYD  V+ 
Sbjct: 388 -------EAAYIPVA-HDYLDAP-QQLDRAWVIAQLKPLLEDENKAKVGQNLKYDASVIA 438

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590
              +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ I
Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLEQVYREIEMPLVPVLSRIERTGVMI 556

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G  
Sbjct: 557 DDMLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 616

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 617 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 675

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   
Sbjct: 676 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 735

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA +
Sbjct: 736 FREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 795

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINA
Sbjct: 796 YMDKYFERYPGVMQYMEDTRSRAAEQGYVETIFGRRLHLPEITSRNGMRRKAAERAAINA 855

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  ++     +   ME
Sbjct: 856 PMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIEIKVQELME 915

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL  +    +NW +
Sbjct: 916 SAA----ELAVPLVADAGHGDNWDQ 936


>gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 362/982 (36%), Positives = 556/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 EVAYLSYKLATIKTDVELELTCEQLEVQQPIAHELLGLFKEYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                T   ++T I                 +++P +L       
Sbjct: 301 GAKP----------------TAKPQETVI----------------IDESPCEL------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             +  ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 322 --KAALSYENYVTILDESTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E++   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDDKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV + ++   S+ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKGDLDAVSKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
 gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
          Length = 932

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 362/983 (36%), Positives = 550/983 (55%), Gaps = 70/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N   LVDGSS+++RA++A P  +   DG P  A+ G  NML  LL+    + IA    V
Sbjct: 6   DNPFILVDGSSYLFRAYHAAPNFTNG-DGQPTGAVYGVINMLRSLLKQFGTDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRN++YP+YKANRP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  IFDAKGKTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+    +D E V++K+GI PE ++   
Sbjct: 121 LASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L+ +  +   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    E  + ++ N   LI     + F + +  +    D    
Sbjct: 241 EGAYLSYELATIKLDVELDKTPEEFVKQEPNVDELIQMFGQMNFKRWLTEMLDGSDGKIV 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + E     ++T+  +  A E E+     +  S++ +                        
Sbjct: 301 SHETSSNSVSTSSKQDDA-EEELIVAAQVDRSKYET------------------------ 335

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        I+  +    W+ KL     A+F   TD++D   +  I ++ + +++ 
Sbjct: 336 -------------ILTKEAFSVWLDKLNNADVAAFDTETDSLDYMVANLIGLSFA-VEEG 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L  LK + E+++  K+G N+KYD  VL 
Sbjct: 382 EAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPYLEDDNKAKVGQNLKYDASVLA 432

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I M+G + D ML SYV +S    H++ S+A ++L +   + +EI    K  +  ++I
Sbjct: 433 RYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E++++ L+L  +L  KL   EKL  V+  ++ P++ V+S+ME  G+ ID 
Sbjct: 493 ALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDD 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI + L  LE+  ++++GE+FN++SPKQL  ILF K++ P   KT +G   T
Sbjct: 553 MLLSAQSLEIGQRLDELEKAAFEVAGEEFNMNSPKQLQTILFEKMELPVIKKTPSGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAE+ GV+IE+V+ + RR AK INF +IYG+S F LA Q+ IPR EA DY+
Sbjct: 732 AGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    + GYVET++GRR+H  EIN+     R   ERAAINAP+
Sbjct: 792 NVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI V + +E + K    +L+Q+HDELVFEV E+ +   +  +   ME+A
Sbjct: 852 QGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEVTTKVRELMEQA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPL       NNW E
Sbjct: 912 ----VQLDVPLVAEAGFGNNWDE 930


>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
 gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
          Length = 931

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 359/984 (36%), Positives = 546/984 (55%), Gaps = 73/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    + IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A + G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G ++ +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGIDKLYENLDDIAGLGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    + L+  + N   L+     L F   +N +         
Sbjct: 241 ENAELSYQLATIKLDVELDETPDSLVKAEPNKDELVKLYGQLVFKSWLNEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                 +D  T +  S   S + Q S +++   P          
Sbjct: 292 ----------------------LDGGTGVVESDEKSGA-QRSSVSAASAPD-------MD 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +T  Q+
Sbjct: 322 TSAVTIDRSQYETILDQATFNAWLEKLKAADVFAFDTETDSLDYMVANLVGLSFAT--QE 379

Query: 418 DDTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              ++  V   ++D      +D          +L  LK   E++   K+G N+KYD  VL
Sbjct: 380 GVAAYVPVAHDYLDAPQQLDRDW---------VLEQLKPILEDDTQAKVGQNLKYDASVL 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            RY I ++G + D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++
Sbjct: 431 ARYDIELKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQ 490

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I   +   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S++E TG+ ID
Sbjct: 491 IELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLID 550

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L   S EI++ L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   
Sbjct: 551 DMKLAAQSQEIAQRLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPS 610

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TG
Sbjct: 611 TNEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINSETGRVHTSYHQAVTATG 669

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F
Sbjct: 670 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +   DIH   AAEI G  I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY
Sbjct: 730 QQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDY 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           + +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP
Sbjct: 790 MNKYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAP 849

Query: 892 IQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  +T     +   ME 
Sbjct: 850 MQGTAADIIKKAMLLVDQWIQAEGDGRVKLLMQVHDELVFEVQESALTEIESKVQELMES 909

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L VPL       +NW++
Sbjct: 910 AA----ELAVPLVAEAGHGDNWEQ 929


>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
 gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
          Length = 934

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 373/984 (37%), Positives = 552/984 (56%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P +   G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+    L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LALEAEKAGHAVLISTGDKDMAQLVTSNVTLINTMNNTILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINASRIKQKKRRENILEY 236
           AL GD+ DNIPG+PG+G KTA  LLQ        Y NL++I   + R   K     + + 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQGLLQGLGGLDMLYANLDSIATLSFR-GAKTMAAKLEQN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS KL  ++TDV + I    L +   +   L    K  EF + +           
Sbjct: 240 KEMAYLSYKLATIKTDVELDITCADLQVSPLDVDTLQQLFKQYEFKRWL----------- 288

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           A++E  V        KG  ++       T      +S   +T K  +E T          
Sbjct: 289 ADVEAGVW---LEGKKGAGVKA------TSAAKSSASAVAETGKAQAEAT---------- 329

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 ++ + Y  I++     +W++KL+     +F   TD +D   +  I ++ + +  
Sbjct: 330 ------LSQEGYVTILDEDTFTEWLEKLKKAEVFAFDTETDGLDTLTANLIGLSFA-IAP 382

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     V   ++D      +           +L+ LK   E+E  LK+G N+K+D  +L
Sbjct: 383 GEAAYLPVAHDYLDAPTQLDR---------AHVLATLKPLLEDEKALKVGQNLKFDMSLL 433

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            RY I++RG   D ML SYVLDS    HD+ S++ ++L +   T +EI    K  +  ++
Sbjct: 434 ARYDITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFEEIAGKGKKQLTFNQ 493

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I+  Q   +A E+++V LQL L + P+L    +LL V+ +++ P++ V+S +E TG+ ID
Sbjct: 494 IALEQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNQIEMPLLPVLSHIERTGVLID 553

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           Q +L   S E++K L  LE   ++L+ E FNL+S KQL  IL+ K K P   KT  G   
Sbjct: 554 QSILATHSIELTKRLAELEIQAHELAEEPFNLASTKQLQAILYEKQKLPILKKTPGGAPS 613

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++   D P+ K ILE+R L+K+K+TY D LP  IN  + RVHT Y  A T TG
Sbjct: 614 TNEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATG 672

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L + F
Sbjct: 673 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAF 732

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAE+FG+ ++KV+ + RR AK INF +IYG+S F LA QL IPR EA  Y
Sbjct: 733 AAGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRY 792

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ EY+E+T+      GYV T+ GRR++  +++S     R   ERAAINAP
Sbjct: 793 MDLYFERYPGVLEYMERTRQQAASQGYVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAP 852

Query: 892 IQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI +RAMI V   L+   K   +M++Q+HDELVFEV E  +  ++Q I   ME 
Sbjct: 853 MQGTAADIIKRAMIEVDAWLQAQEKPLVRMIMQVHDELVFEVHESVLEESNQRIRELMEN 912

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           +    + L VPLKV++ V  NW E
Sbjct: 913 S----MALAVPLKVDVGVGANWDE 932


>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 930

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 365/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----THIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    TTE               +K +Q+ + S   S +  E  P      ++Q  
Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENAP------KIQ-- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL +    +    TD++D   +  + I+ + L+  +
Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           +GI ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  ++I
Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T
Sbjct: 553 DALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGR
Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F 
Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIARKGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+
Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+
Sbjct: 792 NLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A 
Sbjct: 852 QGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V + V  NW E
Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928


>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
 gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
          Length = 918

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 366/978 (37%), Positives = 541/978 (55%), Gaps = 77/978 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L  K +  P  AI G  NML +L     K+  A + A +FD
Sbjct: 4   LLLVDGSSYLYRAFHAMPDLRNKQNE-PTGAIQGVLNMLRRL----HKDYPADYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IYP+YKANR  +P+ L  Q+  +  A QA G P I   G EADD+I     
Sbjct: 59  AKGKTFRDDIYPEYKANRASMPDDLRLQIEPLHTAIQAMGWPLIVEDGVEADDVIGALAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180
            AE+EG  V I + DKD+ QLV+    + +T+++      E +D   V  K+G+PP  MV
Sbjct: 119 QAEREGMRVIISTGDKDISQLVNEHITVVNTMRDAFRKTDEVLDPAGVEAKFGVPPSLMV 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS DN+PG+  +G KTA   L +YG+LENI+ NA +I      EN+ +     
Sbjct: 179 DYLILIGDSSDNVPGVEKVGPKTAVKWLTQYGSLENIVANADQIT-GVVGENLRKALPWL 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             +R+L+ +R DV I   LE L     +  +LI      EF  L                
Sbjct: 238 PTARELITIRCDVGIQESLEDLAPRPQDREKLIELFDRFEFKTL---------------- 281

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                             E+D       +   +++ Q +  +++     LF       + 
Sbjct: 282 ----------------RRELDLAVPAAQAPLPAMAAQPAGTSAD-----LF-------AA 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +    +  I++   +Q+W+ K+ +     F   T ++D   +K + ++ S        
Sbjct: 314 AGVTTRQFETILDEASLQRWLDKISSAALVCFDTETTSLDPLTAKLVGMSFSIK------ 367

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E  ++ L+ H    +  +       L+ +K   EN    K+G N+KYDK VL  +G
Sbjct: 368 --AGEAAYLPLT-HDYPGAPDQLPFAA-TLARIKPLLENPAIKKVGQNLKYDKHVLANHG 423

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
           I + G   D +L SYVL+S R+ H +  +A + L   + T +++       +   +++  
Sbjct: 424 IVLNGIAHDTLLQSYVLESHRT-HGMDDLAMRHLGVQTITYEQVAGKGAKQVSFSQVALE 482

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           Q  E+A E+++V LQL   L P++  + KL  VY +++ P++D++  +E  G+ ID D+L
Sbjct: 483 QASEYAAEDADVTLQLHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDML 542

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            + S EI + L++LE+  Y+L+G+ FNL SPKQL +ILF KL      KT +G   +T +
Sbjct: 543 NRQSHEIGQKLMALEQQAYELAGQPFNLGSPKQLQEILFGKLGIKPLKKTPSGT-PSTDE 601

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ Q    D P+ K +LE+R L+K+KSTY D LP  IN  T RVHT YS A  +TGRL+S
Sbjct: 602 DVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVAVTGRLSS 661

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++T  G++IR AF++P    ++SADYSQIELRI+AH+++   L   F    
Sbjct: 662 SDPNLQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQDDGLLTAFAAGE 721

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAEIFGV  + VS + RR+AK INF +IYG+S F LA  L I R  A +YI+RY
Sbjct: 722 DIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLAQNLGIERQAAQNYIERY 781

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ +Y++ T+   +  GYVET FGRR+   EINSP    R   ERAAINAP+QG+
Sbjct: 782 FTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWVPEINSPNGMRRAGAERAAINAPMQGT 841

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI+V   LE  KLATK+++Q+HDELV EVP+ E+    + +   M+      
Sbjct: 842 AADLIKLAMIAVQGWLESEKLATKLIMQVHDELVLEVPDNELALVKEKLPQLMQDVA--- 898

Query: 956 INLRVPLKVNIKVSNNWQ 973
             L VPL   + V +NW+
Sbjct: 899 -KLDVPLLAEVGVGSNWE 915


>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
          Length = 936

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 369/987 (37%), Positives = 559/987 (56%), Gaps = 80/987 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 12  ENPFILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PSHIAV 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK+ RP +P+ L  Q+  +     A G+P + + G EADD+I T
Sbjct: 67  VFDAKGKTFRDELFEQYKSQRPPMPDDLREQIAPLHEMVAAMGLPLLVVAGVEADDVIGT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K+G  V I + DKD+ QLV+    L +T+    +    V  K+G+PPE MV   
Sbjct: 127 LALQASKKGLPVLISTGDKDMAQLVTADITLINTMTNTLLGPAEVADKYGVPPELMVDFL 186

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+L  I  + S I        K   E + ++ 
Sbjct: 187 ALMGDSSDNIPGVPGVGEKTALALLQGIGDLATIYQDLSAIAPLGFRGSKTLAEKMAQHK 246

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++T+V +T   + L+++  +  +L +     EF + +  +         
Sbjct: 247 DIAFLSYKLATIKTNVDLTTDYDGLVMQAPDIEKLHALFSRYEFKRWLTDL--------- 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       +N G           T KT Q    S  T  +N+           L K
Sbjct: 298 ------------QNGGW---------LTKKTGQ----SPTTVSVNNNDI-------SLAK 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ + Y  I+   D+ QWV+KL++    +F   TD++D   +  I +        
Sbjct: 326 EPVAALSTEHYQTILTKADLMQWVEKLQSAKCFAFDTETDSLDTLSAHLIGL-------- 377

Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
              SF +E     ++ L  H   D+  +  L  E+L+ +K    +++  KIG N+K+D  
Sbjct: 378 ---SFAIEKGKGAYLPLG-HNYLDAPQQLPL-DEVLAAIKPILVDKNIQKIGQNLKFDYG 432

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           V+  Y I ++    D ML SYVL+S  G   HD+ S+AQ+ L++   T +EI    K+ +
Sbjct: 433 VMANYDIELKNMAFDTMLESYVLNSVAGLGRHDMDSLAQRHLNHKTITFEEIAGKGKNQL 492

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++I   Q   +A E+++V L L   L P+L  E KL  ++++++ P++ V+++ME  G
Sbjct: 493 TFNQIPLEQASTYAAEDADVTLLLHQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVG 552

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID + L + S EI+  L+ +E+  Y ++ ++FNL+SPKQL  ILF KL+ P   KT +
Sbjct: 553 VLIDANKLAKQSREIASRLMEIEKEAYAIAEQEFNLASPKQLQAILFEKLQLPVVKKTPS 612

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++    + + K IL+ R LSK+KSTY D LP  I+ +T+RVHT Y  A 
Sbjct: 613 GAPSTNEEVLEEL-AFSHELPKIILQHRSLSKLKSTYTDKLPMMIHPKTKRVHTSYHQAV 671

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++T+ G++IR+AFI+    K+++ADYSQIELRI+AH+++   L
Sbjct: 672 TATGRLSSRDPNLQNIPVRTEEGRRIRQAFIAREGYKIVAADYSQIELRIMAHLSQDKGL 731

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAE+FGV +  V+ + RR AK INF +IYG+S F L+ QL I R +
Sbjct: 732 LDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINFGLIYGMSAFGLSRQLGITRGQ 791

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+ RYF R+PG+  Y+E+T+    + GYVET+ GRR++  +INS  +  R  +ER A
Sbjct: 792 AQHYMDRYFERYPGVLSYMERTRKQAAEQGYVETLAGRRLYLPDINSRNAMRRKASEREA 851

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI ++AMI++ K +E  K    ML+Q+HDELVFEV E  +  + Q I   
Sbjct: 852 INAPMQGTAADIIKKAMIALDKWIESVKPDLYMLMQVHDELVFEVKESAVDRSQQKIRQL 911

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME++    + L VPLKV++ + +NW E
Sbjct: 912 MEQS----MQLTVPLKVDVGIGDNWDE 934


>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 927

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 363/987 (36%), Positives = 542/987 (54%), Gaps = 83/987 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  ++++   +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRHYASD----RMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  EG  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LATQASAEGIPVLISTGDKDMAQLVDENITLINTMTNTVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----------ASRIKQKKRRENI 233
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N           S+   KK  EN 
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLEQLYDNLDSIAALGFRGSKTMAKKLEEN- 239

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               + A LS +L  ++ DV +   +  L     +   LI     L F   +N +    D
Sbjct: 240 ---KDDAMLSYQLATIKLDVKLDHDIPSLSKSAPDQDSLIKLYGQLVFKSWLNELLEGGD 296

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                         T    G A               FS  SD +S +++          
Sbjct: 297 -------------GTIMADGAA---------------FSRGSDTSSDLDT---------- 318

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                S   I+   Y  I++   +  W+ KL +    +F   TD++D   +  + ++ + 
Sbjct: 319 -----SAVKIDRSQYEIILDESAMAVWLNKLRSADVIAFDTETDSLDYMEANLVGVSFA- 372

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           +++       V   ++D      +D          +L  LK   E+    K+G N+KYD 
Sbjct: 373 IEEGVAAYVPVAHDYMDAPKQLERDW---------VLEQLKPILEDGSRAKVGQNLKYDA 423

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
            VL RYGI MRG + D ML SYV +S    HD+ S+A ++L ++    +++    K  + 
Sbjct: 424 SVLARYGIDMRGIKFDTMLASYVYNSVAGKHDMDSLALRFLQHSCISFEQVAGKGKKQLT 483

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I   Q   +A E+++V  +L   L+  L   +KL  +Y  ++ P++ V+S++E TG+
Sbjct: 484 FNQIDLEQAAPYAAEDADVTFRLHQRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGV 543

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID   L   S EI+  L +LE+  +D++G++FN++SPKQL  ILF K+  P   KT +G
Sbjct: 544 LIDDMKLSAQSQEIALRLDALEQQAFDIAGQEFNMNSPKQLQAILFEKMGLPVVKKTPSG 603

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L+++   D P+ + ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T
Sbjct: 604 TPSTNEEVLQELAL-DYPLPEKILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVT 662

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L 
Sbjct: 663 ATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAIDYSQIELRIMAHLSGDRALL 722

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+   DIH   AAEI GV+I +V+ + RR AK +NF +IYG+S F LA QL IPR EA
Sbjct: 723 EAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 782

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAI
Sbjct: 783 QQYMDTYFERYPGVMQYMEDTRSIAAEQGYVETIFGRRLHLPEIQSRNGMRRKAAERAAI 842

Query: 889 NAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI ++AM+ V   ++ + +   K+L+Q+HDELVFEV E  +      I + 
Sbjct: 843 NAPMQGTAADIIKKAMLLVDDWIQTEGQGRVKLLMQVHDELVFEVEETSLPEIESKIRNL 902

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME+A      L+VPL        NW +
Sbjct: 903 MEQAA----QLKVPLVAEAGHGENWDQ 925


>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
 gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
          Length = 930

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 365/983 (37%), Positives = 546/983 (55%), Gaps = 72/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    + IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + +   LI     L F   +N +         
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLE------G 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V  D +T   +G +  ++ D DT                                 
Sbjct: 295 GTGVVEADESTGAARGGSAASKADMDT--------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W+ KL+     +F   TD++D   +  + ++ +T D+ 
Sbjct: 322 -SAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETDSLDYMVANLVGLSFAT-DEG 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+E   K+G N+KYD  VL 
Sbjct: 380 IAAYVPVAHDYLDAPQQLDRDW---------VLAQLKPILEDEAQAKVGQNLKYDASVLA 430

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 491 DLDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 551 MKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVINKTPSGTPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 730 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + G+VETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  ++     + + ME A
Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQNLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L+VPL       +NW +
Sbjct: 910 A----ELKVPLVAEAGHGDNWDQ 928


>gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
 gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
          Length = 924

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 348/979 (35%), Positives = 544/979 (55%), Gaps = 67/979 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+        ++ A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLSNAQ-GEPTGALFGVVNMLRSTLKER-----PAYVAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
            D P  TFR+++Y  YKANRP +P+ L  Q+ P+ R+  +A GI  + I G EADD+I T
Sbjct: 56  VDAPGKTFRDDLYEQYKANRPPMPDELRSQVEPMCRI-VEALGISILRIPGVEADDVIGT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCL 182
                  +   VTI + DKD  QLV P   L +T+   ++D +  V++K+G+  ++++ L
Sbjct: 115 LALQGVAQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDL 174

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTAA  L EY +L+ ++  A  +K K   EN+    E   L
Sbjct: 175 LALMGDTVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIG-ENLRAALERLPL 233

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +R+LV +RTDV +      L L + + P L        FT+ +  +        A  E  
Sbjct: 234 NRELVTIRTDVELEASPTTLALREQDVPELTELYARYGFTQALKELGAPLPAPTAASE-- 291

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                T   +G A             + F+  S +     +              L    
Sbjct: 292 ----ATPSLRGTA-------------AGFARGSAEAPAAGT--------------LDPAL 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  ++  + +Q WV++L+     SF   TD +DA  ++ + I+++    K     
Sbjct: 321 AAPGEYETVLTAEQLQAWVERLQQADLISFDTETDALDAMRARLVGISLAVEPGK----- 375

Query: 423 KVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                +I +      D  G       +++L  L+   ++    K+G + KYD  VL R+G
Sbjct: 376 ---AAYIPVG----HDYPGAPPQLPMQQVLDALRPVLQDPAKKKLGQHGKYDLHVLRRHG 428

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           + ++G+ +D ML S+VL+S  + HD+ S+A ++L Y     +++       IP  ++   
Sbjct: 429 VEVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYNTIKFEDVAGKGAKQIPFSQVGID 488

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E++++ L+L   L+P+L+ E  L  VY  ++ P++ V++ +E  G++ID   L
Sbjct: 489 EASRYAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTSIEANGVRIDTVEL 548

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           ++ S ++S  +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  +
Sbjct: 549 RRQSQDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEE 608

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE I    + + + ILE+R L+K++STY D LP  +N  T RVHT Y  +   TGRL+S
Sbjct: 609 ALEAI-ADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAATGRLSS 667

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G++IRRAFI+P   +L++ADYSQIELRI+AH+++   L   FE   
Sbjct: 668 SDPNLQNIPIRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHLSEDPGLVGAFEQGA 727

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR  AAE+FG  +E+V+P  RR AK INF ++YG+S F LA  L I R +A DY+  Y
Sbjct: 728 DVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALY 787

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ +++E+ +   R  GYVET+FGRR++ ++I++    +R   ERAAINAP+QG+
Sbjct: 788 FSRYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGT 847

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAM+ V + L D     +M+LQ+HDELVFE     +      +V  M +A    
Sbjct: 848 AADIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEELRLQVVERMSQAA--- 904

Query: 956 INLRVPLKVNIKVSNNWQE 974
             LRVPL V+  + NNW E
Sbjct: 905 -KLRVPLVVDTGIGNNWDE 922


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 373/987 (37%), Positives = 563/987 (57%), Gaps = 74/987 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           LFL+DG + IYRA +A     R    G+  +A+ GF N L ++L+  +     SH AV+F
Sbjct: 4   LFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLMEVLKKEK----PSHIAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A T R+  +  YKA+R  +PE L   LP V    + F IP I   G+EADDII T  
Sbjct: 60  DTDAPTERHVDFEAYKAHRQAMPEDLSAALPYVVKLIEGFNIPVITKDGYEADDIIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE-KMV 180
              E++GF V  ++ DKD  QLVS    +Y   +     E + +  V+ KW I    +++
Sbjct: 120 KEGERQGFQVYCMTPDKDFAQLVSENIFIYKPARMGNEMEILGVPEVLAKWDIENVLQVI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GD++DNIPGIPGIG KTA  L+++YG++ENI+ NA  +K  K+REN+  YA+  
Sbjct: 180 DILGLWGDAVDNIPGIPGIGEKTAKSLIRQYGSMENIIANAHELK-GKQRENVEMYAQQG 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANI 299
            +S+KL  +  DVP+T   + L+LE  +   L      LEF  +  RV    +  + A +
Sbjct: 239 LVSKKLATIILDVPVTFDPDALVLEAPSRELLEPLFAELEFRTIGKRVFGEDFSVNEAKV 298

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ----TPQKLFLERL 355
                  NT+                    Q     + T+  ++E      P +LF E  
Sbjct: 299 -------NTS-------------------GQMDMFGNVTAGTDTESKVFVAPPELFAE-- 330

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQ-WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            + ++   N +   ++++T D+++  +++L    S SF   T   DA  ++ + ++ S  
Sbjct: 331 AENAKTIENTEHDYRLIDTADLRKALIEELLQQESISFDTETTGTDANLAELVGLSFSV- 389

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K    +     +I L          + TL + IL   K   ENE+  KIG NIKYD L
Sbjct: 390 --KPGAGY-----YIPLP--------PERTLAQPILDEFKVVLENENIAKIGQNIKYDML 434

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIP 529
           +L  YG+ ++G   D ML  Y++D   + H++  +++ +L Y+   I K      K+   
Sbjct: 435 ILKWYGLEIKGKLFDTMLAHYLIDPD-TRHNMDVLSENYLCYSPISITKLIGPKGKNQGN 493

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +  +QV ++A E+++V LQL  + RP L       +   ++ P+I V++ +E  G++
Sbjct: 494 MRDVPVAQVVDYAAEDADVTLQLANVFRPMLKDLNAEQLATEVENPLIYVLADIESEGVR 553

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           ID + L   S E+  ++   E+N+YD  G +FNL+SPKQLG++LF +L+  P   KTKTG
Sbjct: 554 IDIETLVNYSKELETDIRKFEKNVYDKCGVEFNLASPKQLGEVLFDRLQLDPKAKKTKTG 613

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q++T  +D+       + I+++IL++RQL K+KSTY D+LP  +N +T RVHT Y+ A  
Sbjct: 614 QYQT-GEDVLLALASKSDIVQDILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSYNQAVA 672

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ G+++RRAFI       L+SADYSQIELRI+A I+K   +
Sbjct: 673 ATGRLSSNNPNLQNIPIRTERGREVRRAFIPRDENHVLLSADYSQIELRIIADISKEENM 732

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            Q F   LDIH   AA+++GV IE+V+   RR+AK +NF IIYG S F L+  L IPR E
Sbjct: 733 LQAFNQGLDIHTATAAKVYGVAIEEVTSTQRRNAKAVNFGIIYGQSAFGLSQSLGIPRKE 792

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA+ I +YF ++PGI +Y+  T NF R+NG+VETI GRR +  +INS   ++R   ER A
Sbjct: 793 AAEIIDQYFTQYPGIKKYMSDTMNFARENGFVETILGRRRYLRDINSANQTVRGFAERNA 852

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAAD+ + AMI++HK +    + +KM +Q+HDELVF+V + E+    +II H 
Sbjct: 853 INAPIQGSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELVFDVLKTEVDEMKEIISHR 912

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+ A    I   VP+++ I   NNW E
Sbjct: 913 MKTA----IATTVPIEIEIGQGNNWLE 935


>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4]
 gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4]
          Length = 918

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 365/978 (37%), Positives = 542/978 (55%), Gaps = 77/978 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L  K +  P  AI G  NML +L     K+  A + A +FD
Sbjct: 4   LLLVDGSSYLYRAFHAMPDLRNKQNE-PTGAIQGVLNMLRRL----HKDYPADYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IYP+YKANR  +P+ L  Q+  +  A QA G P I   G EADD+I     
Sbjct: 59  AKGKTFRDDIYPEYKANRASMPDDLRLQIEPLHTAIQAMGWPLIVEDGVEADDVIGALAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180
            AE+EG  V I + DKD+ QLV+    + +T+++      E +D   V  K+G+PP  MV
Sbjct: 119 QAEREGMRVIISTGDKDISQLVNEHITVVNTMRDAFRKTDEVLDPAGVEAKFGVPPSLMV 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS DN+PG+  +G KTA   L +YG+LENI+ +A +I      EN+ +     
Sbjct: 179 DYLILIGDSSDNVPGVEKVGPKTAVKWLTQYGSLENIIAHADQIT-GVVGENLRKALPWL 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             +R+L+ +R DV I   LE L     +  +LI      EF  L                
Sbjct: 238 PTARELITIRCDVGIQESLEDLAPRPQDREKLIELFDRFEFKTL---------------- 281

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                             E+D       +   +++ Q +  +++     LF       + 
Sbjct: 282 ----------------RRELDLAVPAAQAPLPAMAAQPAGTSAD-----LF-------AA 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +    +  I++   +Q+W+ K+ +     F   T ++D   +K + ++ S        
Sbjct: 314 AGVTTRQFETILDEASLQRWLDKISSAALVCFDTETTSLDPLTAKLVGMSFSIK------ 367

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E  ++ L+ H    +  +       L+ +K   EN    K+G N+KYDK VL  +G
Sbjct: 368 --AGEAAYLPLT-HDYPGAPDQLPFAA-TLARIKPLLENPAIKKVGQNLKYDKHVLANHG 423

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
           I++ G   D +L SYVL+S R+ H +  +A + L   + T +++       +   +++  
Sbjct: 424 IALNGIAHDTLLQSYVLESHRT-HGMDDLAMRHLGVQTITYEQVAGKGAKQVSFSQVALE 482

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           Q  E+A E+++V LQL   L P++  + KL  VY +++ P++D++  +E  G+ ID D+L
Sbjct: 483 QASEYAAEDADVTLQLHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDML 542

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            + S EI + L++LE+  Y+L+G+ FNL SPKQL +ILF KL      KT +G   +T +
Sbjct: 543 NRQSHEIGQKLMALEQQAYELAGQPFNLGSPKQLQEILFGKLGIKPLKKTPSGT-PSTDE 601

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ Q    D P+ K +LE+R L+K+KSTY D LP  IN  T RVHT YS A  +TGRL+S
Sbjct: 602 DVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVAVTGRLSS 661

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++T  G++IR AF++P    ++SADYSQIELRI+AH+++   L   F    
Sbjct: 662 SDPNLQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQDDGLLTAFAAGE 721

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAEIFGV  + VS + RR+AK INF +IYG+S F LA  L I R  A +YI+RY
Sbjct: 722 DIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLAQNLGIERQAAQNYIERY 781

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ +Y++ T+   +  GYVET FGRR+   EINSP    R   ERAAINAP+QG+
Sbjct: 782 FTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWVPEINSPNGMRRAGAERAAINAPMQGT 841

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI+V   LE  KLATK+++Q+HDELV EVP+ E+    + +   M+      
Sbjct: 842 AADLIKLAMIAVQGWLESEKLATKLIMQVHDELVLEVPDNELALVKEKLPQLMQDVA--- 898

Query: 956 INLRVPLKVNIKVSNNWQ 973
             L VPL   + V +NW+
Sbjct: 899 -KLDVPLLAEVGVGSNWE 915


>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
 gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
          Length = 935

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 367/985 (37%), Positives = 558/985 (56%), Gaps = 73/985 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEHYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NAALSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVMNGSDSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS---EQTPQKLFLERL 355
                    TTE               +K +Q+ + S   S + +   E TP      ++
Sbjct: 300 --------QTTEQP-------------VKINQYQATSPAQSSVGNSAVENTP------KI 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q      I+   Y  ++   D+ +W++KL T    +    TD++D   +  + I+ + L+
Sbjct: 333 Q------IDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LE 385

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +
Sbjct: 386 NGEAAYLPLQLDYLD-APKTLEKSTA--------LAAIKLILENPNIHKIGQNIKFDESI 436

Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
             R+GI ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  
Sbjct: 437 FARHGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTF 494

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I   Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ 
Sbjct: 495 NQIPLQQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVL 554

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G 
Sbjct: 555 IDSDALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGA 614

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T 
Sbjct: 615 PSTNEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTA 673

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L  
Sbjct: 674 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLIN 733

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A 
Sbjct: 734 AFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQ 793

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AIN
Sbjct: 794 KYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAIN 853

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   +E
Sbjct: 854 APMQGTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHIE 912

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL V + V  NW E
Sbjct: 913 AAA----ELVVPLIVEVGVGQNWDE 933


>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 938

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 361/985 (36%), Positives = 556/985 (56%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE++  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    + L+ +  +   L+++   L F   +  +         
Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMAWYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T    GI    E  + +++  S  ++ +   +    E    +        
Sbjct: 292 ------LDGGT----GIVTADEQAKASSVTASNAANNAASNAAAIPESPAAQ-------- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D   W++KL+     +F   TD++D   +  + ++ + + + 
Sbjct: 334 -----IDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSFA-VAEG 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 388 EAAYIPVAHDYLDAPQQLDRDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 438

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590
              +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ I
Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLAQVYREIEMPLVPVLSRIERTGVMI 556

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G  
Sbjct: 557 DDMLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 616

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 617 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTAT 675

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   
Sbjct: 676 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 735

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA +
Sbjct: 736 FREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 795

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S  +  R   ERAAINA
Sbjct: 796 YMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 855

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  ++     +   ME
Sbjct: 856 PMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLME 915

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL       +NW++
Sbjct: 916 SAA----ELAVPLVAEAGHGDNWEQ 936


>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
 gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
          Length = 937

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 349/985 (35%), Positives = 549/985 (55%), Gaps = 64/985 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 3   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A IFD    TFR+++YP YK +R  +P+ L  Q+  +  A +A G P + ++G EADD+I
Sbjct: 58  ACIFDAKGKTFRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVVEGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPE++V 
Sbjct: 118 GTLAERAAREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L E+G+L+N++ +A  IK     EN+    E   
Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLTEFGSLDNVIAHAGEIKGVVG-ENLRNTLEWLP 236

Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++ D  ++  +P  + LI    +  +L+ F     F   +   +         
Sbjct: 237 KGRELLTVKLDCNLSKEVPTFDALIDGGEDKSKLVDFFSRYGFKTWLREAS-------GE 289

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P    +    N    ++            + + L  Q +  + E  P ++        
Sbjct: 290 ALPDTRSVGAARNAATPVKN--------YAGEAAQLQAQANLFDVEAPPDEI-------- 333

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +     ++ W+Q+L+ +        T ++D   ++ + I++S      
Sbjct: 334 --------KYETVTTEAQLESWMQRLDEVDLVCIDTETTSIDPMLAQLVGISLSVKPG-- 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKL 474
                 E  +I ++ H   D  G +   +     +L+ +K + E+E   K+G ++KYD  
Sbjct: 384 ------EACYIPVA-HRGPDVAGFDAAAQLSRDTVLARMKLWLEDESRKKVGQHLKYDAH 436

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPI 530
           V   + I++RG E D ML SYVL+S R+ H + ++A++ L   + T + +     S I  
Sbjct: 437 VFANHDIALRGIEHDTMLESYVLESHRN-HGMDALAERVLHLKTITYEAVCGKGASQIGF 495

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           D++   +  E+A E+++V L+L   L PK+  + KL +VYE+++ P   V+ +ME  G+ 
Sbjct: 496 DEVPLDRATEYAAEDADVTLRLHRTLFPKVAEDDKLRYVYEQIEMPASIVLQKMERNGVL 555

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L + S E+   L+ LE   + L+G+ FNLSSPKQ+GDI F ++K P   KT +G 
Sbjct: 556 IDADRLAKQSNELGLRLIDLEAEAHKLAGQPFNLSSPKQIGDIFFNQMKLPVIKKTASGA 615

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N RT RVHT Y  A+ +
Sbjct: 616 PSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAV 674

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS +PNLQNIP++T+ G++IR AFI+P    ++SADYSQIELRI+AH+++   L +
Sbjct: 675 TGRLASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMR 734

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    D+HR  AAE+F V   +V+P  RR AK INF +IYG+S F LA+ L I R  A 
Sbjct: 735 AFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAFGLASNLGIGRDAAK 794

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI RYF R+PG   Y+++T+   R+ GYVET+FGRR+   +IN      R   ERAAIN
Sbjct: 795 LYIDRYFARYPGAASYMDETRQRAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAIN 854

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AAD+ + +M++V   L+   + +++++Q+HDELV EVP++E+    + +   M 
Sbjct: 855 APMQGTAADLIKLSMLAVQGWLDAEAMRSRLVMQVHDELVLEVPQDELAVVRERLPELMC 914

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
                   LRVPL   + V  NW+E
Sbjct: 915 SVA----TLRVPLVAEVGVGANWEE 935


>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
 gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
          Length = 930

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 364/983 (37%), Positives = 546/983 (55%), Gaps = 72/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    + IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + +   LI     L F   +N +         
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLE------G 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V  D +T   +G +  ++ D DT                                 
Sbjct: 295 GTGVVEADESTGAARGGSAASKADMDT--------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W+ KL+     +F   TD++D   +  + ++ +T D+ 
Sbjct: 322 -SAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETDSLDYMVANLVGLSFAT-DEG 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+E   K+G N+KYD  VL 
Sbjct: 380 IAAYVPVAHDYLDAPQQLDRDW---------VLAQLKPILEDEAQAKVGQNLKYDASVLA 430

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +  + KL  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 491 DLDEASPYAAEDADVTLRLHNRLFANIEQDDKLKTVYEEIEMPLVPVLSRIERTGVLIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 551 MKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 730 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + G+VETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  ++     + + ME A
Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQNLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L+VPL       +NW +
Sbjct: 910 A----ELKVPLVAEAGHGDNWDQ 928


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 360/983 (36%), Positives = 547/983 (55%), Gaps = 74/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLMQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVKAMGLPLLAVTGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G  V I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LAQEAEKQGRPVLISTGDKDMAQLVTPGITLINTMTNTVLGPEEVEQKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           A+ GDS DNIPG+PG+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLEKVADLSFRGAKTMAAKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L + + +   L +     EF + +            
Sbjct: 241 DVAFLSYQLATIKTDVELELGCEQLTVNEPDVAVLQTLFSRYEFKRWL------------ 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   ++  E K +       + T        +L+DQ +                + 
Sbjct: 289 --------VDLQEGKWL-------QGTKGSAPAQQALADQPAA---------------KA 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   +++D Y  I++     +W++KL+     +F + TD++D   +  + +A + +   
Sbjct: 319 ETASVLSSDGYVTILDQDTFSRWLEKLKKSDVFAFDLETDSLDTLSANIVGLAFA-VAPG 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      + +         +L+ LK   E+    K+G N+KYD+ VL 
Sbjct: 378 EAAYLPVAHDYLDAPDQLDRAA---------VLAQLKPLLEDSKAAKVGQNLKYDRGVLK 428

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            Y I + G + D ML SY L+S    HD+ S+A +WL++   T +EI    K+ +  ++I
Sbjct: 429 NYDIELNGIKYDTMLESYCLNSVGGKHDMDSLAARWLNHKTVTFEEIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L  E     V+  ++ P++ V+S++E  G+ IDQ
Sbjct: 489 AIEQAGHYAAEDADVTLQLHLKMWPELEKEAGPKKVFTEIEMPLLKVISRVERNGVLIDQ 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L + S E++  L  LE+  +DL+GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 NILAKHSQELTTRLAELEQQAHDLAGEPFNLSSTKQLQTILFEKQGIKPTKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPVTGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+ P K++++ADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSTDPNLQNIPVRNDEGRRIRQAFIAGPDKRIVAADYSQIELRIMAHLSQDKGLLAAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FGV + KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 728 QGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+      GYVET+ GRR+   +I S  +  R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLRYMEETREQAAAKGYVETLDGRRLWLPDITSSNAIRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L + K    KM++Q+HDELVFE+ ++ + +AS  I   ME +
Sbjct: 848 QGTAADIIKRAMIAVDGWLLEQKDDKVKMIMQVHDELVFEIHQDAVASASDKIRQLMEGS 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPL V +    NW +
Sbjct: 908 ----MKLDVPLLVEVGTGENWDQ 926


>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
          Length = 935

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 369/985 (37%), Positives = 558/985 (56%), Gaps = 73/985 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P +A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTSAMYGVLNMLKSLISQVQP----THIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINS--EQTPQKLFLERL 355
                    TTE               +K +Q+ + S  Q S  NS  E TP      ++
Sbjct: 300 --------QTTEQP-------------VKMNQYQATSPAQNSVGNSAVENTP------KI 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q      I+   Y  ++   D+  W++KL      +    TD++D   +  + I+ + L+
Sbjct: 333 Q------IDRTKYESLLTQADLTHWIEKLNAAKLIAVDTETDSLDYMSANLVGISFA-LE 385

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +
Sbjct: 386 NGEAAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESI 436

Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
             R+GI ++G E D ML+SY L+S GR  H++  +A+++L +     + I    KS +  
Sbjct: 437 FARHGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESIAGKGKSQLTF 494

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I   Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ 
Sbjct: 495 NQIPLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVL 554

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID + L   S EI+  L +LEE  Y L+G+ FNL+S KQL +ILF KL  P   KT  G 
Sbjct: 555 IDSNALFMQSNEIATRLTALEEQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGA 614

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T 
Sbjct: 615 PSTNEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTA 673

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L  
Sbjct: 674 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLIN 733

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAEIFGV++++++ + RR+AK INF +IYG+S F L+ QL I R++A 
Sbjct: 734 AFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQ 793

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AIN
Sbjct: 794 KYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAIN 853

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME
Sbjct: 854 APMQGTAADIIKRAMIKLDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHME 912

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL V + V  NW E
Sbjct: 913 AAA----ELVVPLIVEVGVGQNWDE 933


>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
 gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
          Length = 938

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 364/986 (36%), Positives = 559/986 (56%), Gaps = 70/986 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE++  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    + L+ +  +   L+++   L F   +  +         
Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T    GI    E  + +++  S  ++ +   +    E    +        
Sbjct: 292 ------LDGGT----GIVTADEQAKASSVTASNAANNAASNAAAIPESPAAQ-------- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D   W++KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 334 -----IDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSFAVAEG- 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  E  +I ++ H   D+     L +E +++ LK   E+E   K+G N+KYD  V+
Sbjct: 388 -------EAAYIPVA-HDYLDAP--QQLDREWVITQLKPLLEDESKAKVGQNLKYDASVM 437

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++
Sbjct: 438 ARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 497

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQ 589
           I   +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ 
Sbjct: 498 IDLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLEQVYREIEMPLVPVLSRIERTGVM 555

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID  LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G 
Sbjct: 556 IDDMLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGT 615

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T 
Sbjct: 616 PSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTA 674

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L  
Sbjct: 675 TGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLD 734

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA 
Sbjct: 735 AFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQ 794

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +Y+ +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S  +  R   ERAAIN
Sbjct: 795 EYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNAMRRKAAERAAIN 854

Query: 890 APIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           AP+QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  ++     +   M
Sbjct: 855 APMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLM 914

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A      L VPL       +NW++
Sbjct: 915 ESAA----ELAVPLVAEAGHGDNWEQ 936


>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
 gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
          Length = 938

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 363/985 (36%), Positives = 556/985 (56%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE++  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    + L+ +  +   L+++   L F   +  +         
Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  T    GI    E  R +++  S  ++ +   +    E    +        
Sbjct: 292 ------LDGGT----GIVTADEQARASSVTASNAANNAASNAAAIPESPAAQ-------- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D   W++KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 334 -----IDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSFAVAEG- 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  E  +I ++ H   D+  +      +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 388 -------EAAYIPVA-HDYLDAP-QQLDRAWVIAQLKPLLEDESKAKVGQNLKYDASVMA 438

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590
              +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+ I
Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLAQVYREIEMPLVPVLSRIERTGVMI 556

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G  
Sbjct: 557 DDMLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 616

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 617 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 675

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   
Sbjct: 676 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 735

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA +
Sbjct: 736 FREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 795

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINA
Sbjct: 796 YMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNGIRRKAAERAAINA 855

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  ++     +   ME
Sbjct: 856 PMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLME 915

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL       +NW++
Sbjct: 916 SAA----ELAVPLVAEAGHGDNWEQ 936


>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
 gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
          Length = 932

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 366/985 (37%), Positives = 555/985 (56%), Gaps = 74/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    E IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPE-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+ +YP+YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDNMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             + A + G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAHQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G ++++      I        K   + + E+ 
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGIKDLYERLDDIAPLGFRGSKTMAKKLTEHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+ +  N   L      L F   +N +         
Sbjct: 241 DNAVLSYELATIKLDVELDCTPESLLKQQPNVDELTKLYGQLTFKSWLNEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 L+  T E +  A+E+   + T+      +S SD+ S+++               
Sbjct: 292 ------LEGGTGEVE--AVESAARKTTS------ASQSDEQSEMDR-------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            SQ  I+  +Y  I+  +    W++KL++    +F   TD++D   +  + +        
Sbjct: 324 -SQVTIDRSAYETILTEESFNSWLEKLKSAPVIAFDTETDSLDYMVANLVGL-------- 374

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475
              SF +E   +   V  + D  G    L ++ +L  LK   E++   K+G N+KYD  V
Sbjct: 375 ---SFAIEE-GVAAYVPVAHDYIGAPEQLDRQWVLEQLKPLLEDDAIAKVGQNLKYDASV 430

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L RY I ++G + D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  +
Sbjct: 431 LARYDIELKGIKFDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKAQLTFN 490

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q   +A E+++V  +L   L  +L   E L  +Y+ ++ P++ V+S++E TG+ I
Sbjct: 491 QIDLEQASPYAAEDADVTFRLHQRLNAELEKNEALNRIYQDIEVPLVPVLSRIERTGVLI 550

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S EI+  L  LE+  ++++G++FNLSSPKQL  I F K+  P   KT +G  
Sbjct: 551 DDMLLGAQSQEIAARLDELEQKAFEIAGQEFNLSSPKQLQTIFFEKMGLPVIKKTPSGAP 610

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T T
Sbjct: 611 STNEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTAT 669

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+ + G++IR+AFI+P   K+++ DYSQIELRI+AH++    L   
Sbjct: 670 GRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGWKILAVDYSQIELRIMAHLSGDKALLDA 729

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  DIH   AAEI GV+I++V+ + RR AK INF +IYG+S F L+ QL IPR EA  
Sbjct: 730 FKNGKDIHAATAAEIIGVDIDQVTSEQRRRAKAINFGLIYGMSAFGLSKQLGIPRGEAQQ 789

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINA
Sbjct: 790 YMDTYFERYPGVMQYMEDTRSLAAEKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINA 849

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V + ++ + +   K+L+Q+HDELVFEV    ++     I   ME
Sbjct: 850 PMQGTAADIIKKAMLLVDEWVQAEGEGKVKLLMQVHDELVFEVESSSLSEIESKIQKLME 909

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL       +NW +
Sbjct: 910 SAA----ELDVPLVAEAGHGDNWDQ 930


>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 928

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 359/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            ++P      T     + I+               S S+  + ++ E             
Sbjct: 301 GVKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
 gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
          Length = 910

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 368/979 (37%), Positives = 542/979 (55%), Gaps = 87/979 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  A+ G  NML +L     K+  A + A +FD
Sbjct: 4   LLLVDGSSYLYRAFHALPDL-RNKAGEPTGAMYGVLNMLRRL----HKDYPADYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IYPDYKA+RP +P+ L  Q+  +  A +A G P + I G EADD+I     
Sbjct: 59  AKGKTFRDDIYPDYKAHRPPMPDDLSRQIEPLHEAIRAMGWPLLMIDGVEADDVIGCLAQ 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE +G  V I + DKD+ QLV+P   L +T+  E +D   V  K+GIPP  ++    L 
Sbjct: 119 QAEAQGMQVVISTGDKDMAQLVTPHIKLVNTMTNEILDEAGVEAKFGIPPSLIIDYLTLI 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAETARLSR 244
           GDS+DN+PG+  +G KTA   L ++G+L+NI+ NA+ I           L++  T R   
Sbjct: 179 GDSVDNVPGVEKVGPKTAVKWLTQHGSLDNIIANAANIGGVVGNNLRKALDWLPTGR--- 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L+ +R  + +   +  L+ +  +  +L    +  EF                       
Sbjct: 236 ELIKIRCRLDLPHMVTELVTQPADNAKLAELYERFEF----------------------- 272

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
             NT          E+D  +T  T+         ++I+    P  LF      + +    
Sbjct: 273 --NTWRR-------ELDAASTAGTA--------PARIDPSSAPGDLFSASATHIGR---- 311

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              +  I++   + +W+  L++    +    T ++D   +K + +           SF V
Sbjct: 312 --EFETILDQASLDRWLLLLKSAPLVALDTETTSLDPMQAKLVGM-----------SFSV 358

Query: 425 ET---IFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           E     ++ L+     D TG  +       L  L+   E+    K+G N+KYDK VL  +
Sbjct: 359 EAGKAAYVPLA----HDYTGAPQQLDFTAALRQLRPMLEDASIPKLGQNLKYDKHVLANH 414

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535
           GI++ G   D +L SYVL+S R+ H +  +A + L   + T ++I       +P  +IS 
Sbjct: 415 GIALNGITHDTLLQSYVLESHRT-HGMDDLAMRHLGVQTVTYEQIAGKGAKQVPFSQISI 473

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
               E+A E++++ LQL   L P++  + KL  VY  ++ P++D++  +E  G+ IDQ +
Sbjct: 474 ETAAEYAAEDADITLQLHQALYPQIEADDKLAFVYREIEMPLLDILYTIERNGVLIDQAM 533

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+  S EI + L+ LE+  YD++G+ FNL SPKQL +ILF KL      KT +G   +T 
Sbjct: 534 LQAQSHEIGQKLIDLEQQAYDIAGQPFNLGSPKQLQEILFGKLGIKPLKKTPSGA-PSTD 592

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +D+ Q    D P+ K +LE+R L+K+KSTY D LP  IN  T RVHT YS A  +TGRLA
Sbjct: 593 EDVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPRMINPATGRVHTSYSQAVAITGRLA 652

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G++IR AFI+PP   +ISADYSQIELRI+AH+++   L   F   
Sbjct: 653 SSDPNLQNIPVRTAEGRRIREAFIAPPGASIISADYSQIELRIMAHLSQDEGLLSAFAKG 712

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AAEIFGV  ++VS + RR+AK INF +IYG+S F LA  L I R  A +YI R
Sbjct: 713 EDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMSAFGLAQNLNIERGAAQNYIDR 772

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+ EY++ T+   ++ GYVET FGRR+   EINSP    R   ERAAINAP+QG
Sbjct: 773 YFARYPGVREYMQNTRMLAKEQGYVETFFGRRLWVPEINSPNGMRRAGAERAAINAPMQG 832

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + AMI+V + L +H L +K+++Q+HDELV EVP+ E+    Q +   M+     
Sbjct: 833 TAADLIKLAMIAVDRWLREHNLNSKIIMQVHDELVLEVPDAELELVQQTLPQLMQGVA-- 890

Query: 955 KINLRVPLKVNIKVSNNWQ 973
              L VPL   + V  NW+
Sbjct: 891 --KLDVPLLAEVGVGKNWE 907


>gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 928

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 360/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+               SLS+  + ++ E             
Sbjct: 301 GAKPAAKPQET-----VVID--------------ESLSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
 gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
          Length = 940

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 366/989 (37%), Positives = 552/989 (55%), Gaps = 70/989 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M  +  L LVDGSS++YRAF+A P L R   G P      AI G  NM+  L    R+E 
Sbjct: 1   MTDKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPKSPATGAIRGMINMMTAL----RREV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A + A IFD P  TFR+++YP+YKANR  +P+ L  Q+  +    +  G P + +   E
Sbjct: 56  RADYAACIFDAPGKTFRDDLYPEYKANRSPMPDDLRSQIDPIHEVVKLMGWPVLCVPDIE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T    A ++G  V + S DKDL QLV     + DT+  +K D+  V  ++G+PP
Sbjct: 116 ADDVIGTLAKTAAQQGIEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             M+  Q L GD++DN+PG+  +G KTAA  L EYG+L+ ++  A+ +K +   EN+ + 
Sbjct: 176 TLMIDYQTLVGDAVDNVPGVEKVGPKTAAKWLLEYGSLDALIERAAEVKGQAG-ENLRKA 234

Query: 237 AETARLSRKLVMLRTDVPIT-----IP-LEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            +   LSR+LV +RTD  +      +P LE L +       L  F +   F  L+  +  
Sbjct: 235 LDKLPLSRQLVTIRTDCNLAAHVAGLPSLEGLPVGAPQTAELKPFYERFGFKSLVKSL-- 292

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
               +A  + P +++ N        I+ ++ R       Q   L D+++++ +       
Sbjct: 293 ----EALEVPPELIEEN--------IKKQMARGAAASADQ-GGLFDESAELGA------- 332

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               L+  S  P +N  Y  I   +    W+ KLE    A+    T ++D   ++ + + 
Sbjct: 333 ----LEAAS--PASNLKYDTITTWEQFDAWLAKLEAAELAAIDTETTSLDEMVARIVGV- 385

Query: 411 ISTLDQKDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
                     SF +E     ++ L+ H   D+  +     E+L+ LK + EN    K+G 
Sbjct: 386 ----------SFSIEPGAAAYVPLA-HNYPDAPAQLPF-DEVLARLKPWLENPAKKKLGQ 433

Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           +IKYD+ V   +GI ++G+  D ML SYVL++ R  H +AS+A++ L  +    +++   
Sbjct: 434 HIKYDRHVFANHGIEVQGYAHDTMLQSYVLEAHRP-HGLASLAERHLGRSGISYEDLCGK 492

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
               IP  ++  ++  E++ E+S+  L + L L P++  ++ L    +L+    + + ++
Sbjct: 493 GAHQIPFSQVDIAKAAEYSCEDSDQTLDVHLALWPQIERDEKLRFIYQLEMDSSEALYRV 552

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+ ID   L   S E+   +++LE+  Y+++G+ FNL SPKQ+G+I FTKL  P   
Sbjct: 553 ERNGVLIDAPTLAAQSHELGTRIMALEQEAYEIAGQPFNLGSPKQIGEIFFTKLGLPVVK 612

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT +G   T  + LE++   D P+   ILE R LSK+K TY D L    N RT RVHT Y
Sbjct: 613 KTPSGAPSTDEEVLEKL-AEDYPLPAKILEHRGLSKLKGTYTDKLGQLANPRTGRVHTHY 671

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           + A  +TGRL+S +PNLQNIPI+T  G+++R AFI+PP   + SADYSQIELRI+AHI+ 
Sbjct: 672 AQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAPPGSVIASADYSQIELRIMAHISG 731

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + F   +D+HR  AAE+FG   ++VS + RR+AK INF +IYG+S F LA  L I
Sbjct: 732 DESLLRAFREGIDVHRATAAEVFGATPDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGI 791

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
               AA YI RYF R+PG+  Y+++TK   ++ GYVET+FGRR++  EINSP    R   
Sbjct: 792 ETKAAASYIDRYFARYPGVKAYMDETKALAKEKGYVETVFGRRLYLPEINSPNGPRRGGA 851

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAAINAP+QG+AAD+ + +MI V   L++ K AT+M++Q+HDELVFEVPE EI      
Sbjct: 852 ERAAINAPMQGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDELVFEVPEAEIEWVRTE 911

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           I   M         L+VPL   I +  NW
Sbjct: 912 IPRLMAGVA----ELKVPLLAEIGIGPNW 936


>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
 gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
          Length = 966

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 363/980 (37%), Positives = 552/980 (56%), Gaps = 73/980 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 45  ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 99

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 100 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 159

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G AV I + DKD+ QLV+P   L +T+    +  E V  K+G+PPE ++   
Sbjct: 160 LAKEAAAAGRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFL 219

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I +      K     + +  
Sbjct: 220 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAELSFRGAKTMAAKLEQNK 279

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  + L ++      L++  +  EF +       T D +A 
Sbjct: 280 DVAYLSYQLATIKTDVELELSHDRLEVQQPLADELLALFRQYEFKRW------TSDLEAG 333

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                      +  K  A  +E          +  +LS                      
Sbjct: 334 KWL-------QSRGKPAAKPSETIVVEAEPEEEAVALS---------------------- 364

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                  ++ Y  I++ + +Q W+++++T    +    TD++D   +  + I+ +T +  
Sbjct: 365 -------SERYVTILDEEMLQAWIERIKTAPVVAVDTETDSLDNLTANLVGISFAT-EPG 416

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E+E  +K+G N+K+D+ +L 
Sbjct: 417 LAAYIPVAHDYLDAPDQLPRD---------RVLELLKPLLEDESLVKVGQNLKFDRGILQ 467

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+LDS    HD+ S++ +WL +T    ++I    K+ +  ++I
Sbjct: 468 NYGIELRGIVFDTMLESYILDSVSGRHDMDSLSSRWLKHTTITFEQIAGKGKNQLTFNQI 527

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V LQL L + PKL   K  L+++E ++ P++ V+S++E  G++ID 
Sbjct: 528 DLEQAGRYAAEDADVTLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDP 587

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI+  L  LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 588 AVLHAHSQEIALKLAELEQKAHEIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 647

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K IL++R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 648 SEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGR 706

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 707 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFA 766

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E VS + RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 767 EGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 826

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +IN+  ++ R   ERAAINAP+
Sbjct: 827 DLYFERYPGVLEYMERTRKQAKEQGYVETLDGRRLYLPDINASNAARRAGAERAAINAPM 886

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   LE  +   KM++Q+HDELVFEV ++++   SQ I   ME + 
Sbjct: 887 QGTAADIIKRAMIAVDGWLEKEQPRVKMIMQVHDELVFEVHKDDVEAVSQKIHELMENS- 945

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              + L VPL V +    NW
Sbjct: 946 ---MQLDVPLLVEVGSGVNW 962


>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
 gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
          Length = 930

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 365/982 (37%), Positives = 556/982 (56%), Gaps = 72/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----THIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    TTE               +K +Q+ + S   S +  E TP      ++Q  
Sbjct: 300 --------QTTEQP-------------VKMNQYKATSQDQSAV--ENTP------KIQ-- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL +    +    TD++D   +  + I+ + L+  +
Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           +GI ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  ++I
Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 493 PLQQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T
Sbjct: 553 DALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGR
Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F 
Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+
Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+
Sbjct: 792 DLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   +E A 
Sbjct: 852 QGTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHIEAAA 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V + V  NW E
Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928


>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
 gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
          Length = 930

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 364/983 (37%), Positives = 545/983 (55%), Gaps = 72/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    + IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + +   LI     L F   +N +         
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLE------G 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V  D +T   +G +  ++ D DT                                 
Sbjct: 295 GTGVVEADESTGAARGGSASSKADMDT--------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W+ KL+     +F   TD++D   +  + ++ +T D+ 
Sbjct: 322 -SAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETDSLDYMVANLVGLSFAT-DEG 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+E   K+G N+KYD  VL 
Sbjct: 380 IAAYVPVAHDYLDAPQQLDRDW---------VLAQLKPILEDEAQAKVGQNLKYDASVLA 430

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 491 ELDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 551 MKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++    K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 730 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + G+VETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  ++     + + ME A
Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQNLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L+VPL       +NW +
Sbjct: 910 A----ELKVPLVAEAGHGDNWDQ 928


>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
 gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
          Length = 937

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 354/987 (35%), Positives = 551/987 (55%), Gaps = 68/987 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 3   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A IFD    TFR+++YP YK +R  +P+ L  Q+  +  A +A G P + I+G EADD+I
Sbjct: 58  ACIFDAKGKTFRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVIEGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPE++V 
Sbjct: 118 GTLAERAAREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L E+G+L+N++  A  IK     EN+    E   
Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLTEFGSLDNVIARAGEIKGVVG-ENLRNTLEWLP 236

Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++ D  ++  +P  + LI    +  +L+ F     F   +   +     D   
Sbjct: 237 KGRELLTVKLDCDLSKEVPTFDALIDGGEDKSKLVDFFSRYGFKTWLREASGEALPD--- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIK--TSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                     T + G A +      T +K    + + L  Q +  + E  P ++      
Sbjct: 294 ----------TRSVGAARKAA----TPVKNYAGEAAQLQAQANLFDVEAPPDEI------ 333

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +     ++ W+Q+L+ +        T ++D   ++ + I++S    
Sbjct: 334 ----------KYETVTTEAQLESWMQRLDEVDLVCIDTETTSIDPMLAQLVGISLSVKPG 383

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYD 472
                   E  +I ++ H   D  G +   +     +L+ +K + E+E   K+G ++KYD
Sbjct: 384 --------EACYIPVA-HRGPDVAGLDAAAQLSRDTVLARMKLWLEDESRKKVGQHLKYD 434

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSI 528
             V   + I++RG E D ML SYVL+S R+ H + ++A++ L   + T + +     S I
Sbjct: 435 AHVFANHDIALRGIEHDTMLESYVLESHRN-HGMDALAERVLHLKTITYEAVCGKGASQI 493

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             D++   +   +A E+++V L+L   L PK+  + KL +VYE+++ P   V+ +ME  G
Sbjct: 494 GFDEVPLDRATAYAAEDADVTLRLHRTLFPKVAEDDKLRYVYEQIEMPTSIVLQKMERNG 553

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID D L + S E+   L+ LE   + L+G+ FNL SPKQ+GDI F ++K P   KT +
Sbjct: 554 VLIDADRLAKQSNELGLRLIELEAEAHKLAGQPFNLGSPKQIGDIFFNQMKLPVIKKTAS 613

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N RT RVHT Y  A+
Sbjct: 614 GAPSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQAT 672

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRLAS +PNLQNIP++T+ G++IR AFI+P    ++SADYSQIELRI+AH+++   L
Sbjct: 673 AVTGRLASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGL 732

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F    D+HR  AAE+F V   +V+P  RR AK INF +IYG+S F LA+ L I R  
Sbjct: 733 MRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAFGLASNLGIGRDA 792

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI RYF R+PG   Y+E+T+   R++GYVET+FGRR+   +IN      R   ERAA
Sbjct: 793 AKLYIDRYFARYPGAANYMEETRQSAREHGYVETVFGRRLWLPDINGGNGPRRQAAERAA 852

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AAD+ + +M++V   LE   + +++++Q+HDELV EVP++E+    + +   
Sbjct: 853 INAPMQGTAADLIKLSMLAVQGWLEAEAMRSRLVMQVHDELVLEVPQDELAVVRERLPEL 912

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M         LRVPL   + V  NW+E
Sbjct: 913 MCSVA----TLRVPLVAEVGVGANWEE 935


>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
 gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
          Length = 931

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 365/984 (37%), Positives = 547/984 (55%), Gaps = 73/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    E IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +    +  + 
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNEL---LEGGSG 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDT-TIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +E V L  +   +   +   E++    TI  SQ+ ++ D+ S                 
Sbjct: 298 TVEAVELAGSAQASSSSSSHAEMETSAVTIDRSQYETILDEAS----------------- 340

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                                  W++KL+     +F   TD++D   +  + ++ + +D+
Sbjct: 341 --------------------FNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFA-IDE 379

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  V   ++D      +D          +L  LK   E++   K+G N+KYD  VL
Sbjct: 380 GIAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVL 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++
Sbjct: 431 ARYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 490

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I   Q   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID
Sbjct: 491 IELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLID 550

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   
Sbjct: 551 DMKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPS 610

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TG
Sbjct: 611 TNEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATG 669

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F
Sbjct: 670 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH   AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA  Y
Sbjct: 730 RDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAY 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           + +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP
Sbjct: 790 MDKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAP 849

Query: 892 IQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  ++     +   ME 
Sbjct: 850 MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMES 909

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L+VPL       +NW +
Sbjct: 910 AA----ELKVPLVAEAGHGDNWDQ 929


>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 928

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 360/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+               S S+  + ++ E             
Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   S+ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVSKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
 gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
          Length = 911

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 352/975 (36%), Positives = 541/975 (55%), Gaps = 75/975 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVD S +++RA++A P L+    G P  A+ G  NML KL+++ R E I     V+FD
Sbjct: 7   LILVDASGYLFRAYHALPKLTNSR-GEPTGALVGVLNMLRKLIEDHRPEYIG----VVFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR++ YPDYKANRP +PE L  Q+  +R   +A G+P + + G EADD+I T   
Sbjct: 62  AGGRGFRHDRYPDYKANRPAMPEDLRAQIEPLRTIIRAMGLPLLVVPGVEADDVIGTLAT 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I + DKDL QLV     L +T+   ++D + V +K+G+PPE++V   AL 
Sbjct: 122 QAAATGLPTLISTGDKDLAQLVGEHVTLINTMTGTRLDPDGVREKFGVPPERIVDYLALM 181

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG+P  G KTAA  + EYG+L+ ++  A  IK K   E++    +   L+R L
Sbjct: 182 GDSVDNVPGVPKCGPKTAAKWIAEYGDLDGVMAQAGTIKGKIG-ESLRAVLDQLPLARDL 240

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ DV + +    L     +   L ++ + LE  +L+                     
Sbjct: 241 TTIKRDVALDLGPTDLRPTPPDVETLRNWYERLESRRLLA-------------------- 280

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
            T +  G+A            T+  S  ++ +++  +   PQ                  
Sbjct: 281 -TLDGVGVA---------GAPTAARSHEAEHSTESEAGTEPQ------------------ 312

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I+    ++ W+ +L+T    +F   T  +DA  ++ + ++ + L+        +  
Sbjct: 313 -YELILTEAALEDWLSRLQTADLFAFDTETTALDAMQAELVGVSFA-LEPGRAAYVPLAH 370

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
           ++        +D          +L+ LK   E+    K+G N+KYD  VL RY I++RG 
Sbjct: 371 VYPGAPDQLDRD---------RVLARLKPLLEDPGRPKVGQNLKYDMSVLARYDIALRGI 421

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
             D +L SYVLDS  + HD+ S+A+++L +     +++       I  D++   Q   +A
Sbjct: 422 AHDTLLESYVLDS-TARHDLDSLAKRFLDHDTIRFEDVAGKGAKQIGFDQVPLEQAGPYA 480

Query: 543 IENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++ V L+L  + +P+L  V  L  +Y  ++ P++ V+S++E  G+ ID   L   SAE
Sbjct: 481 AEDAEVTLRLHRVFQPRLAAVPALERLYREIEMPLVPVLSRLERAGVLIDSARLATQSAE 540

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +++ +L LEE+ Y ++G +FNL SPKQ+G I F +L  P  AKT  G   T+   LE++ 
Sbjct: 541 LARKILELEESAYRVAGRRFNLGSPKQIGAIFFDELGLPVVAKTPKGAPSTSEDVLERLA 600

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              + + + IL+ R LSK++STY D LP  +++ T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 601 AEGHELPRIILDHRGLSKLRSTYTDKLPRMVDRDTGRVHTSYHQAVTATGRLSSSDPNLQ 660

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T+ G++IRRAFI+    +L++ADYSQIELRI+AH++    L   F    DIHR  
Sbjct: 661 NIPIRTEEGRRIRRAFIAASGHRLLAADYSQIELRIMAHLSGDERLLAAFAGGQDIHRAT 720

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAEI G+  E V+ + RR AK INF +IYG+S F LA QL I R  A +Y+ RYF R+PG
Sbjct: 721 AAEILGLAPEDVTGEQRRSAKAINFGLIYGMSAFGLARQLGIERGAAQEYVDRYFERYPG 780

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + +++++T+  VR++GYVET+FGRR+H  EI     + R   ER AINAP+QG+AADI +
Sbjct: 781 VRDFMDRTRRQVREDGYVETLFGRRLHLPEIGHGNQARRAAAERTAINAPMQGTAADIIK 840

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           RAMI+V   +E  + A +++LQ+HDELV EV E  +      +  +ME A      L VP
Sbjct: 841 RAMIAVDAWIEAEQPAARLILQVHDELVLEVAESAVEETRARVCAAMETAA----ELAVP 896

Query: 962 LKVNIKVSNNWQEEN 976
           L V+I    NW + +
Sbjct: 897 LVVDIGEGANWDDAH 911


>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
 gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
          Length = 938

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 365/987 (36%), Positives = 558/987 (56%), Gaps = 72/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  +++    + IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMVRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE++  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    + L+ +  +   L+++   L F   +  +         
Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS-LSDQTSKINSEQTPQKLFLERLQ 356
                 LD  T    GI    E  + +++  S  ++  +   + I +    Q        
Sbjct: 292 ------LDGGT----GIVTADEQAKVSSVTASNTANNAASHGAAIPASPAVQ-------- 333

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 I+   Y  I+N +D   W++KL+     +F   TD++D   +  + ++ +  + 
Sbjct: 334 ------IDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSCAVAEG 387

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475
                   E  +I ++ H   D+     L +E +++ LK   E+E   K+G N+KYD  V
Sbjct: 388 --------EAAYIPVA-HDYLDA--PQQLDREWVIAQLKPLLEDESKAKVGQNLKYDASV 436

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           + RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  +
Sbjct: 437 IARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFN 496

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGI 588
           +I   +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+S++E TG+
Sbjct: 497 QIDLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLEQVYREIEMPLVPVLSRIERTGV 554

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            I+  LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G
Sbjct: 555 MINDMLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSG 614

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T
Sbjct: 615 TPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVT 673

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L 
Sbjct: 674 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH   AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA
Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +Y+ +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAI
Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNGMRRKAAERAAI 853

Query: 889 NAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  ++     +   
Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQL 913

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A      L VPL       +NW +
Sbjct: 914 MESAA----ELAVPLVAEAGHGDNWDQ 936


>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
 gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
 gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
 gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
 gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
          Length = 930

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 364/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P +A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPSLTNAA-GEPTSAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRKGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKN 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    TTE               +K +Q+ + S   S +  E TP      ++Q  
Sbjct: 300 --------QTTEQP-------------VKMNQYKATSQDQSAV--ENTP------KIQ-- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL      +    TD++D   +  + I+ + L+  +
Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNAAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           +GI ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  ++I
Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL+ P   KT  G   T
Sbjct: 553 DALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLELPVLQKTPKGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE+++   + + K +++ R LSK+KSTY D LP  +N +T RVHT Y  A T TGR
Sbjct: 613 NEEVLEELSYS-HELPKILVKHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G+ IR+AFI+     +++ADYSQIELRI+AH++    L   F 
Sbjct: 672 LSSSDPNLQNIPIRNEEGRHIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+
Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+
Sbjct: 792 DLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A 
Sbjct: 852 QGTAADIIKRAMIKLDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V + V  NW E
Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928


>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
 gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
          Length = 908

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 357/981 (36%), Positives = 536/981 (54%), Gaps = 93/981 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  AI G  NML +L     K+   S  AV+FD
Sbjct: 6   LILVDGSSYLYRAFHALPPLTTSK-GQPTGAIKGVVNMLRRL----EKDYPESPIAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P+ L  Q+  +    +A G+P + ++G EADD+I T   
Sbjct: 61  AKGKTFRDDMYKDYKANRPPMPDDLRSQVEPLHELIRAMGLPLLIVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              ++G  V + + DKD+ QLV+    L +T+ +  +DIE V  K+GIPPE ++   AL 
Sbjct: 121 EGTEKGLPVVVSTGDKDMAQLVNEHITLVNTMTDTVMDIEGVKAKFGIPPELIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240
           GD +DNIPG+PG+G KTA  LLQ  G L +I      I        K   + + E  + A
Sbjct: 181 GDKVDNIPGVPGVGEKTALALLQNLGGLNDIYTRLDEIASLSFRGSKSMAKKLEENRDNA 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +L  ++TDVP+ +P+E L     +   L+++ + LEF   I  +      D  +  
Sbjct: 241 YLSYELATIKTDVPLELPIEELKPAPADKAGLMNWYQELEFKGWIAELENAPADDDGHAV 300

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P          + +A+ETE                                         
Sbjct: 301 P----------EAVALETE----------------------------------------- 309

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  +++    + W++KL+     +F   T +++   ++ + +           
Sbjct: 310 -------YDVVLDESAFEAWLEKLQAAALFAFDTETTSLNYMDAEIVGV----------- 351

Query: 421 SFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
           SF VE       V  + D  G    L++E +L+ LK   EN+   K+G N+KYD  VL  
Sbjct: 352 SFAVEP-GKAAYVPVAHDYLGAPEQLSREHVLARLKPLLENDGLKKVGQNLKYDANVLAN 410

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           Y I+++G   D ML SYV +S  S HD+ ++A+  L +     ++I       +  ++I 
Sbjct: 411 YDIALKGIAYDTMLESYVHNSTGSRHDMDTLAELHLGHKTIHFEDIAGKGAKQLTFNQIK 470

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +   +A E++++ L+L   L PK+   E L  V+  ++ P++ ++S++E  G  +D  
Sbjct: 471 LEEAGPYAAEDADITLRLHQALWPKVAEAEGLKTVFNDVELPLVSILSRIERNGALLDTK 530

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL ++S +   +++ LE+  Y+L+GE+FNL SPKQL  ILF K+  P   KT  G   T 
Sbjct: 531 LLGELSLQHGASIVKLEKEAYELAGEEFNLGSPKQLATILFEKMNLPVVKKTAKGAPSTN 590

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + ++++   D P+   IL+ R LSK+KSTY D LP  +NK+T RVHT Y  A   TGRL
Sbjct: 591 EEVMQELAL-DYPLPSVILQHRSLSKLKSTYTDKLPTMVNKKTGRVHTSYHQAVAATGRL 649

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPIKTD G++IR+AFI+P   K+++ADYSQIELRI+AH++    L + F  
Sbjct: 650 SSSDPNLQNIPIKTDEGRRIRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGLQKAFAE 709

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LD+H+  AAE+FG  +E VS + RR AK INF +IYG+S F LA QLRI R++A  YI 
Sbjct: 710 GLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIYGMSAFGLARQLRIGRNDAQTYID 769

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+ EY+   +    + GYVET+ GRR++  EINS     R   ER AINAP+Q
Sbjct: 770 TYFERYPGVAEYMANIRKSAAEKGYVETLLGRRLYLPEINSSNGMRRQAAERVAINAPMQ 829

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI V   L+  ++  ++++Q+HDELV EV   +    S  +   M  A +
Sbjct: 830 GTAADIIKRAMIDVDAWLQTEQIDARIIMQVHDELVLEVAAADAEAISAKLCDIMSSAVV 889

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L VPL V   + +NW +
Sbjct: 890 ----LSVPLLVEAGIGDNWDQ 906


>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
 gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
          Length = 946

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 357/996 (35%), Positives = 562/996 (56%), Gaps = 79/996 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 5   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 60  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPEK+V 
Sbjct: 120 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPEKIVD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L+N++  A  IK     EN+    +   
Sbjct: 180 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVG-ENLRNTLDWLP 238

Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  ++  +P  + L+    +  RL  F     F   + R AT        
Sbjct: 239 KGRELLTVKTDCDLSPDVPSFDALVDGGEDRARLADFFGRYGFKTWL-REATGES----- 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLERL 355
                  +  T + G A      R       Q++   +   Q S  + E  P ++     
Sbjct: 293 -------LPDTRSVGAA------RKAATPVKQYAPEAAAQQQASLFDVETPPAEV----- 334

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +     ++ W++ L+          T ++D   ++ + I++S   
Sbjct: 335 -----------KYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGISLSVQP 383

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKE-ILSYLKKFFENEHFLKIGHNIKY 471
                    +  +I ++ H   D +G +    L++E +L+ ++ + E+E   K+G ++KY
Sbjct: 384 G--------QACYIPVA-HRGPDVSGLDAPAQLSREAVLARMRLWLEDETRGKVGQHLKY 434

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSS 527
           D  V   +GI++RG   D ML SYVL S R+ H + ++A++ L   + T +E+     + 
Sbjct: 435 DAHVFANHGIALRGITHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQ 493

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           I  D+++  +  E+A E++++ L+L   L PK+  + KL +VYER++ P   V+ +ME T
Sbjct: 494 IGFDEVALDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERT 553

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ +D + L + SAE+ + LL+LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT 
Sbjct: 554 GVLVDAERLARQSAELGQRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTA 613

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +G   T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A
Sbjct: 614 SGAPSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQA 672

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           + +TGRLAS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH++    
Sbjct: 673 TAVTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDG 732

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R 
Sbjct: 733 LMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRD 792

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            A  YI RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERA
Sbjct: 793 AAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERA 852

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEEIT 938
           AINAP+QG+AAD+ + +M++V   LE    A        +++++Q+HDELV EVP++E+ 
Sbjct: 853 AINAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELA 912

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              + +   M    L    L VPL   + V +NW+E
Sbjct: 913 RVRERLPELMCGVAL----LSVPLVAEVGVGSNWEE 944


>gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 928

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 359/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+               S S+  + ++ E             
Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
 gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
          Length = 931

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 365/984 (37%), Positives = 546/984 (55%), Gaps = 73/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    E IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +    +  + 
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNEL---LEGGSG 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDT-TIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +E V L  +   +   +   E++    TI  SQ+ ++ D+ S                 
Sbjct: 298 TVEAVELAGSAQASSSSSSHAEMETSAVTIDRSQYETILDEAS----------------- 340

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                                  W++KL+     +F   TD++D   +  + ++ + +D+
Sbjct: 341 --------------------FNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFA-IDE 379

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  V   ++D      +D          +L  LK   E++   K+G N+KYD  VL
Sbjct: 380 GIAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVL 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++
Sbjct: 431 ARYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 490

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I   Q   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID
Sbjct: 491 IELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLID 550

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   
Sbjct: 551 DMKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPS 610

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TG
Sbjct: 611 TNEEVLHELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATG 669

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F
Sbjct: 670 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH   AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA  Y
Sbjct: 730 RDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAY 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           + +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP
Sbjct: 790 MDKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAP 849

Query: 892 IQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  ++     +   ME 
Sbjct: 850 MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMES 909

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L+VPL       +NW +
Sbjct: 910 AA----ELKVPLVAEAGHGDNWDQ 929


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 923

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 354/983 (36%), Positives = 544/983 (55%), Gaps = 79/983 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRA++A P  +   DG P  A+ G  NML  +L+    E    H AV
Sbjct: 6   ENPLILIDGSSYLYRAYHAAPNFTNS-DGEPTGAVYGVVNMLRSMLRQFSTE----HIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR++++P+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMFPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV     L +T+ +  +D   V+ K+GI PE ++   
Sbjct: 121 LATQASQQGMPVLISTGDKDMAQLVDQNITLINTMTDVVMDPAGVVDKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ +  N   I        K   + +L+  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDALYDNLDDIAPLGFRGSKTMAKKLLDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +S KL  ++ DV + +  + L     +   L      L+F + +  +         
Sbjct: 241 EAAYMSYKLATIKLDVELDVKPDELRKGVPDTDALTELFGKLQFRRWLTEM--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   +  ++ + +A E                         S   P +      +K
Sbjct: 292 --------LEGSDGRIVADE------------------------KSGNAPAE------KK 313

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I++      W+++L+   + +F   TD +D   +  + ++ + +++ 
Sbjct: 314 AVAPTIDRSGYEIILDEAAFNVWLEQLKAAKAFAFDTETDGLDYMTANVVGVSFA-IEEG 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+ +  KIG N+K+D  ++ 
Sbjct: 373 KAAYVPVAHDYLDAPAQLDRDW---------VLAQLKPLLEDPNQAKIGQNLKFDASIVA 423

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L +   + +EI    K  +  ++I
Sbjct: 424 RYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEIAGKGKKQLTFNQI 483

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             +Q   +A E++++ L+L   L PK+   EKL HV+E ++ P++ V+S+ME TG+ +D 
Sbjct: 484 DLAQAGPYAAEDADITLRLHNALYPKVEADEKLKHVFETIEMPLVPVLSRMERTGVYVDS 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  ++++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 544 MLLGAQSTEIAARLDELEKKAFEIADQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 604 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++    K+++ DYSQIELRI+AH++    L   F 
Sbjct: 663 LSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFR 722

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI G++IE+VS + RR AK INF +IYG+S F LA QL + R+EA DY+
Sbjct: 723 HGKDIHAATAAEILGLDIEQVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQDYM 782

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+N   + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 783 NVYFERYPGVLEYMESTRNTASEKGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI + AMI+V   ++   +   ++L+Q+HDELVFEV E  + + +  +   ME+A
Sbjct: 843 QGTAADIIKLAMIAVDNWVQQQPQDEVRLLMQVHDELVFEVKESALESVTAEVKALMEQA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW +
Sbjct: 903 A----TLDVPLIADAGFGDNWDQ 921


>gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301]
 gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301]
          Length = 928

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 370/982 (37%), Positives = 544/982 (55%), Gaps = 75/982 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R     P  AI G  NML +L     K+  + + A +FD
Sbjct: 4   LLLVDGSSYLYRAFHAMPDL-RNSQNEPTGAIQGVLNMLRRL----HKDYPSDYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IY +YKANR  +P+ L  Q+  +  A +A G P I   G EADD+I     
Sbjct: 59  AKGKTFRDDIYAEYKANRASMPDDLRLQIEPLHEAIKAMGWPLIVESGVEADDVIGALAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180
            AE+EG    I + DKD+ QLV+    + +T+++      + +DI  V  K+GIPP  MV
Sbjct: 119 QAEREGIRTIISTGDKDISQLVNEHITVVNTMRDAFRRTDDVLDIAGVENKFGIPPSLMV 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GD+ DN+PG+  +G KTA   L+EYG+L+NI+ NA +I   K  EN+       
Sbjct: 179 DYLVLIGDTSDNVPGVEKVGPKTAVKWLKEYGSLDNIVANADKIT-GKVGENLRAALGWL 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             +R+L+ +R DV I   L  L  +  +  +L       EF      +    D       
Sbjct: 238 PTARELITIRCDVGIQENLSDLSPQTIDKAKLAELFDRFEFKSWRRELENMQDN-----A 292

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV    N T                   ++F      TS+I   QT           ++Q
Sbjct: 293 PVPTSGNVT-------------------AKFP-----TSQIQPTQTADMF------AVTQ 322

Query: 361 YPINND-SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  N   ++  I+  + +  W+ KL+T     F   T ++D   +K + +          
Sbjct: 323 FTANTSRNFETILTNQQLDTWLAKLQTAKLMCFDTETTSLDPMTAKIVGM---------- 372

Query: 420 TSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            SF VE     ++ L  H   D+  +     E L+ +K   EN    K+G N KYD+ VL
Sbjct: 373 -SFSVEAGSAAYLPLK-HDYFDAPEQLDFV-ETLAKIKPILENAAIKKVGQNFKYDQHVL 429

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDK 532
             +GI++ G   D ML SYV +S ++ H + ++A++ L   + + +E+       +  ++
Sbjct: 430 ANHGIALNGIAHDTMLESYVFESHKT-HGMDALAERHLGIQTISFEEVAGKGAKQVTFNQ 488

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           ++     E+A E++++ LQL   + P++  + KL  +Y +++ P   ++  +E  G+ ID
Sbjct: 489 VTVEVASEYAAEDADITLQLHQAMYPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLID 548

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +D+L   S EI   L++LE   Y+L+G+ FNL SPKQL +ILF KL      KT +G   
Sbjct: 549 RDMLNIQSNEIGAKLVALENQAYELAGQPFNLGSPKQLQEILFDKLGIKPTKKTPSGA-P 607

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T +D+ Q    D+P+ K +LE+R L+K+KSTY D LP  IN +T RVHT Y+ A  +TG
Sbjct: 608 STDEDVLQELALDHPLPKVLLEYRGLAKLKSTYTDKLPKMINAQTGRVHTSYNQAVAITG 667

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RLAS +PNLQNIP+++  G++IR AFI+P    ++SADYSQIELRI+AH++K   +   F
Sbjct: 668 RLASSDPNLQNIPVRSAEGRRIREAFIAPKGSHIVSADYSQIELRIMAHLSKDEGMLAAF 727

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            N+ DIHR  AAEIFGV  E V  + RR+AK INF +IYG+S F LA  L I R  AA Y
Sbjct: 728 ANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMSAFGLAQNLNIERGAAASY 787

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+RYF R+PG+ EY++ T+   +Q GYVET FGRR+   EINSP  + R   ERAAINAP
Sbjct: 788 IERYFARYPGVREYMQNTREIAKQKGYVETYFGRRLWVPEINSPNGTRRAGAERAAINAP 847

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AAD+ + AMI+V K L   KL TK+++Q+HDELV EVP+ E+    Q +   M+  
Sbjct: 848 MQGTAADLIKLAMIAVDKWLRHEKLQTKLIMQVHDELVLEVPDNELELVKQKLPELMQNV 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
                 L VPL   + V +NW+
Sbjct: 908 A----KLDVPLLAEVGVGSNWE 925


>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
 gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
          Length = 944

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 357/996 (35%), Positives = 562/996 (56%), Gaps = 79/996 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 3   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 58  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPEK+V 
Sbjct: 118 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPEKIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L+N++  A  IK     EN+    +   
Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVG-ENLRNTLDWLP 236

Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  ++  +P  + L+    +  RL  F     F   + R AT        
Sbjct: 237 KGRELLTVKTDCDLSPDVPSFDALVDGGEDRARLADFFGRYGFKTWL-REATGES----- 290

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLERL 355
                  +  T + G A      R       Q++   +   Q S  + E  P ++     
Sbjct: 291 -------LPDTRSVGAA------RKAATPVKQYAPEAAAQQQASLFDVETPPAEV----- 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +     ++ W++ L+          T ++D   ++ + I++S   
Sbjct: 333 -----------KYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGISLSVQP 381

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKE-ILSYLKKFFENEHFLKIGHNIKY 471
                    +  +I ++ H   D +G +    L++E +L+ ++ + E+E   K+G ++KY
Sbjct: 382 G--------QACYIPVA-HRGPDVSGLDAPAQLSREAVLARMRLWLEDETRGKVGQHLKY 432

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSS 527
           D  V   +GI++RG   D ML SYVL S R+ H + ++A++ L   + T +E+     + 
Sbjct: 433 DAHVFANHGIALRGITHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQ 491

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           I  D+++  +  E+A E++++ L+L   L PK+  + KL +VYER++ P   V+ +ME T
Sbjct: 492 IGFDEVALDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERT 551

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ +D + L + SAE+ + LL+LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT 
Sbjct: 552 GVLVDAERLARQSAELGQRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTA 611

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +G   T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A
Sbjct: 612 SGAPSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQA 670

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           + +TGRLAS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH++    
Sbjct: 671 TAVTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDG 730

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R 
Sbjct: 731 LMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRD 790

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            A  YI RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERA
Sbjct: 791 AAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERA 850

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEEIT 938
           AINAP+QG+AAD+ + +M++V   LE    A        +++++Q+HDELV EVP++E+ 
Sbjct: 851 AINAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELA 910

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              + +   M    L    L VPL   + V +NW+E
Sbjct: 911 RVRERLPELMCGVAL----LSVPLVAEVGVGSNWEE 942


>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
 gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
           exonuclease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 928

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 359/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+               S S+  + ++ E             
Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 928

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 359/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+               S S+  + ++ E             
Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLNAVAKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
          Length = 930

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 364/983 (37%), Positives = 544/983 (55%), Gaps = 72/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    E IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +    +  + 
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNEL---LEGGSG 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E V L  +   +   +         TI  SQ+ ++ D+ S                  
Sbjct: 298 TVEAVELAGSAQASSSSSHAEMETSAVTIDRSQYETILDEAS------------------ 339

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                                 W++KL+     +F   TD++D   +  + ++ + +D+ 
Sbjct: 340 -------------------FNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFA-IDEG 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 380 IAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLA 430

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 431 RYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 491 ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 551 MKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 730 DGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L+VPL       +NW +
Sbjct: 910 A----ELKVPLVAEAGHGDNWDQ 928


>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
 gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
          Length = 957

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 366/999 (36%), Positives = 557/999 (55%), Gaps = 77/999 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLIAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDNLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAANDGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYA 237
           AL GD  DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++     R        +    
Sbjct: 181 ALQGDVSDNIPGVKGVGGKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLVPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 EAADLSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDSN---- 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              PV      T+N    I            + + + S  +  + +EQT  K+ ++R   
Sbjct: 297 ---PV------TQNSAEKI-----------PNNYQATSSVSQAVETEQTFAKVDIDR--- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413
                     Y  +   + +Q W++K+      +    TD++D+  +  + I+       
Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQAKLVAVDTETDSLDSMSANLVGISFGLANGE 385

Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLT-KEILSYLKKFFENEH 461
                L  K+  + + +    DL    ++  T       KN L     ++ LK   EN  
Sbjct: 386 ACYIPLTHKEQVTLEPQQS--DLFAEPTEAETITSFELAKNQLNLTACVTELKPLLENAD 443

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR-- 517
             KIG NIKYD  +   +G+ + G   D ML SY L+S GR  H++  +A+++L +    
Sbjct: 444 VKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNSTGR--HNMDELAERYLGHKTIE 501

Query: 518 -KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKP 575
            +EI    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P
Sbjct: 502 FEEIAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELDKAPTLVKLFNEIEMP 561

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +++V+S++E  G+ I+ + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFT
Sbjct: 562 LVEVLSRIERNGVLIEPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFT 621

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL  P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN++
Sbjct: 622 KLGLPVLKKTPKGAPSTNEEVLDELAGRGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQK 681

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIEL
Sbjct: 682 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFITNKGYKIVAADYSQIEL 741

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F
Sbjct: 742 RIMAHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF 801

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+ QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S 
Sbjct: 802 GLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSS 861

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +  R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE
Sbjct: 862 NAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEE 920

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   SQ+I   MEKA    I L+VPL   + V +NW E
Sbjct: 921 RVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955


>gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 928

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 359/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+               S S+  + ++ E             
Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKSPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 928

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 359/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+               S S+  + ++ E             
Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
 gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
          Length = 892

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 354/980 (36%), Positives = 551/980 (56%), Gaps = 97/980 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++  ++L+DGSS+IYRA+YA   LS    G P NA+ GF  ML K++    KE    H
Sbjct: 2   MSEKPTIYLIDGSSYIYRAYYAIRHLSSPK-GFPTNALYGFIQMLLKVI----KEKKPDH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD    TFRNEIY DYKANR  +P+ L  Q+  ++ A +AF IPA+E+ GFEADDI
Sbjct: 57  LAVIFDAGRQTFRNEIYADYKANRAAMPDDLRQQIEPIKEAVRAFNIPALELAGFEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T     E++G A  +++ DKDLMQ+VS    L DT+K++      V++++G+  E+++
Sbjct: 117 IGTIARDCEEKGMAAVVVTGDKDLMQIVSDNVTLLDTMKDKVSGPAEVVERFGVGSERVI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GDS DNIPG+PGIG KTA  L+ ++G+L+ +L  A+ +K K   E + E+AE A
Sbjct: 177 DILGLAGDSSDNIPGVPGIGEKTAIKLVNDFGSLDELLARANEVKGKTG-ERLQEFAEQA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           RLSR+L  +                DC+ P                 +A +YD  AA+ +
Sbjct: 236 RLSRRLATI----------------DCHVP-----------------LAWSYDDFAASPQ 262

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    +N+ +A           K   F++L     ++ SE T              
Sbjct: 263 ---------DNRRLA--------ELFKEYGFTTL---MKELTSEAT-------------- 288

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             ++ + Y  ++++ D    V++L  + + +  + T +++   ++ + I+ S  +     
Sbjct: 289 --LSAEDYRTVLSSDDFTALVRQLTAVRAFAVDLETTSLNPLEAEIVGISFSFREH---- 342

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               E  +I +     +     + L+++ +L  LK    +    KIG NIKYD  VL R 
Sbjct: 343 ----EAYYIPVG---HRYPGAPHQLSRDDVLGALKPLLLDPEKHKIGQNIKYDYQVLRRA 395

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535
           GI M+G + D ML SY+L+  R+S  + S+A ++L +   +  E+    K      ++  
Sbjct: 396 GIDMQGIWCDTMLASYLLNPTRTSQGLDSLAVEFLDHRMISYAEVAGKGKEQKNFAQVEV 455

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +   ++ E+++    L  L  P+L    +  ++  L+ P++ ++++ME+ G+++D  LL
Sbjct: 456 EKASVYSCEDADATYLLHKLFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLL 515

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ-WKTTA 654
           +++S      L  LE  I+ L+G +FN++SPKQLG++LF +L+   G KTKT   W T  
Sbjct: 516 QRLSDGFGGQLADLEREIFALAGGEFNVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNV 575

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            +LE++  G++ I + IL++R LSK+KSTY D+LP  ++  + RVHT Y+ A T TGRL+
Sbjct: 576 DELERL-AGEHEIARLILQYRSLSKLKSTYTDALPKLVDAASGRVHTSYNQAVTNTGRLS 634

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPI+++ G+ IR AFI+     L+SADYSQIELR+LAH++        F   
Sbjct: 635 SSEPNLQNIPIRSEEGRSIRHAFIAAEGCLLLSADYSQIELRVLAHLSADRVFCDAFARD 694

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AAE+FG+  + V+ +MRR AKTINF +IYG   F LA +L +    A ++I  
Sbjct: 695 EDIHTRTAAEVFGLFPQMVTQEMRRQAKTINFGVIYGQGAFSLARELGVSTKVAKEFIDN 754

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R  G   +++        NGYV TI GRR+   +I S   +IR   +R A+N PIQG
Sbjct: 755 YFARHAGARTFLDGCVREAEDNGYVTTILGRRLPIPDIKSSNGNIRAFAQRNAVNYPIQG 814

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI ++AM+ V   +E   + +++++Q+HDELVFEVPEEE      ++ H ME A   
Sbjct: 815 SAADIIKQAMVRVVDRMEREGMKSRLIMQVHDELVFEVPEEEKLAMEMLVKHEMEHA--- 871

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            + LRVPL+V++    NW E
Sbjct: 872 -VTLRVPLRVDMNFGRNWSE 890


>gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
 gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
          Length = 944

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 356/996 (35%), Positives = 561/996 (56%), Gaps = 79/996 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 3   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 58  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPEK+V 
Sbjct: 118 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L+N++  A  IK     EN+    +   
Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVG-ENLRSTLDWLP 236

Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  ++  +P  + L+    +  RL  F     F   + R AT        
Sbjct: 237 KGRELLTVKTDCDLSPDVPSFDALVDGGEDRARLADFFGRYGFKTWL-REATGES----- 290

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLERL 355
                  +  T + G A      R       Q++   +   Q S  + E  P ++     
Sbjct: 291 -------LPDTRSVGAA------RKAATPVKQYAPEAAAQQQASLFDVETPPAEV----- 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +     ++ W+Q L+          T ++D   ++ + I++S   
Sbjct: 333 -----------KYETVTTEAQLESWMQLLDASELVCIDTETTSIDPMLAQLVGISLSVQP 381

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKE-ILSYLKKFFENEHFLKIGHNIKY 471
                    +  +I ++ H   D +G +    L++E +L+ ++ + E+E   K+G ++KY
Sbjct: 382 G--------QACYIPVA-HRGPDVSGLDAPAQLSREAVLARMRLWLEDETRGKVGQHLKY 432

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSS 527
           D  V   +GI++RG   D ML SYVL S R+ H + ++A++ L   + T +E+     + 
Sbjct: 433 DAHVFANHGIALRGITHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQ 491

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           I  D+++  +  E+A E++++ L+L   L PK+  + KL +VYER++ P   V+ +ME  
Sbjct: 492 IGFDEVALDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERN 551

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ +D + L + SAE+ + LL+LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT 
Sbjct: 552 GVLVDAERLARQSAELGQRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTA 611

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +G   T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A
Sbjct: 612 SGAPSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQA 670

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           + +TGRLAS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH++    
Sbjct: 671 TAVTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDG 730

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R 
Sbjct: 731 LMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRD 790

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            A  YI RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERA
Sbjct: 791 AAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERA 850

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEEIT 938
           AINAP+QG+AAD+ + +M++V   LE    A        +++++Q+HDELV EVP++E+ 
Sbjct: 851 AINAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELA 910

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              + +   M        +L VPL   + V +NW+E
Sbjct: 911 RVRERLPELMCGVA----SLSVPLVAEVGVGSNWEE 942


>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
 gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
          Length = 934

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 354/983 (36%), Positives = 533/983 (54%), Gaps = 71/983 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  DG P  AI G   ML KLL   R +  A H A +FD
Sbjct: 10  LLLVDGSSYLYRAYHAMPDL-RGPDGQPTGAIHGLVAML-KLL---RSQIGAEHAACVFD 64

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP YKA RP +P+ L  Q+  +    +  G P +E+ G EADD+I T   
Sbjct: 65  AKGPTFRDDWYPLYKAQRPPMPDDLRLQIEPIHEVVRLLGWPVLEVPGIEADDVIGTLAQ 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +AEK G  V I + DKDL QLV+    L +T+  E +DIE V  K+G+PP+++V    L 
Sbjct: 125 LAEKSGHRVVISTGDKDLAQLVTEHVTLINTMSRESLDIEGVKAKFGVPPDRIVDYLTLM 184

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTAA  + E+G+L+ ++  A  IK     EN+    +    +RKL
Sbjct: 185 GDTVDNVPGVEKVGPKTAAKWIAEHGSLDGVVAAAGSIKGVAG-ENLRRALDWLPTARKL 243

Query: 247 VMLRTD------VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           V ++TD      VP    LE L L + +   L +F     F                   
Sbjct: 244 VTVKTDCDLSGHVPAWPALEALALREVDPDGLRAFYMRNGFRTWTRE------------- 290

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                          +E +      I ++   +L D        Q               
Sbjct: 291 ---------------LEAQAPSAPVIASAAAPALDDMA------QASGNGDAPAQAPAPA 329

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I  T+ +  W+ +L+     +    TD++D   ++ I I           
Sbjct: 330 ADGAAGRYETIFTTEQLDAWIARLQAAPLVAIDTETDSLDPMRARIIGI----------- 378

Query: 421 SFKVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
           SF V+ +     V    D  G        E+L+ L+ + E+    K+G NIKYD  V   
Sbjct: 379 SFAVQPLEAAY-VPVGHDYPGAPDQLPLDEVLARLRPWLEDAGTRKVGQNIKYDSHVFAN 437

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           +G+++RG+  D ML SYVL++    H +AS+A + L  +    +++       IP   ++
Sbjct: 438 HGVTVRGYAHDTMLESYVLEA-HKPHGLASLADRHLGRSGINYEDLCGKGAGQIPFSHVA 496

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   ++ E+S + LQ+   L P+L  E +L  +YE ++ P  +V+ ++E  G+ ID  
Sbjct: 497 VDQASTYSGEDSEMTLQVHQTLWPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDAG 556

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L + S ++++ + +LE+  + ++G+ FN+SSPKQ+G+ILFTKL  P   KT +G   T 
Sbjct: 557 VLARQSHQLAQRMHTLEQEAHAIAGQPFNMSSPKQIGEILFTKLGLPVKKKTASGAPSTD 616

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+   ILE R L+K+K TY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 617 EEVLQEL-AADYPLPARILEHRSLAKLKGTYTDKLPLMVNPSTGRVHTNYAQAVAITGRL 675

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T  G+++R AF++ P  KL+SADYSQIELR++AHI+    L + F +
Sbjct: 676 SSNDPNLQNIPIRTAEGRRVREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLKAFAD 735

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +D+HR  AAE+F +    V+ + RR+AKTINF +IYG+  F LA  L I +  A DYI+
Sbjct: 736 GMDVHRATAAEVFNIAAADVTSEQRRYAKTINFGLIYGMGAFGLAASLGIEQKAARDYIE 795

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+P +  Y+++TK    Q G+VET+FGRRI   EI       +   ER AINAP+Q
Sbjct: 796 RYFARYPDVKRYMDETKAGAAQLGHVETLFGRRIVLPEIKGGNGPRKAAAERQAINAPMQ 855

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + AMI+V K+++D   A+KM++Q+HDELV EVPE E+  A + +   M     
Sbjct: 856 GTAADLIKLAMIAVQKAIDDEGRASKMIMQVHDELVLEVPEAELGWAREALPRLMAGVA- 914

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 915 ---QLKVPLVAEVGEGANWEEAH 934


>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 937

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 367/987 (37%), Positives = 550/987 (55%), Gaps = 85/987 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVD SS++YRA++A P L+  H   P  A+ G  NML  LL         SH AV+
Sbjct: 7   NPLILVDASSYLYRAYHALPPLTNSHKE-PTGAMYGVLNMLRSLLSQYHP----SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFR+E+Y  YK++RP +P+ L  Q+ PL R+  +A G+P + + GFEADD+I T
Sbjct: 62  FDAKGKTFRDELYVQYKSHRPPMPDDLASQIEPLYRM-VRAMGLPLLVVAGFEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+    L +T+    +  + V  K+G+PPE M+   
Sbjct: 121 LAQQAEKAGRSVVISTGDKDMAQLVTTNITLINTMNNTVLGSQEVRDKYGVPPELMIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  L+Q  G L+ +  N  +I        K     + ++ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALIQGLGGLDCLFSNLEKIATLTFRGAKTFAAKLQQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + I  + L +   +  +L       EF + +  + +  D    
Sbjct: 241 ELAYLSYQLATIKTDVKLDIAHDKLNIPPPDIDQLHQLFSRYEFKRWLAELNSP-DWPMG 299

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P                T ID + T  +++FS                         
Sbjct: 300 KKRPA---------------TSID-EPTAPSARFS------------------------- 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                   D+Y  I++   +  W+++L      +F   TD +D  ++  I +        
Sbjct: 319 -------QDNYQIILDEDSLSHWIEQLNQADLFAFDTETDGLDIINANLIGL-------- 363

Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
              SF +   E  ++ L+ H   D+  +   T  +L  LK   EN    K+G N+K+DK 
Sbjct: 364 ---SFAITPGEAAYLPLA-HDYSDAPIQLDRTL-VLDKLKPLLENPQKQKVGQNLKFDKS 418

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           +L R GI ++G   D ML SY+L++    HD+ S++Q++L +   T +EI    KS +  
Sbjct: 419 ILARCGIVLQGIAFDTMLESYILNTVAGRHDMDSLSQRYLQHKTITFEEIAGKGKSQLTF 478

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQ 589
           ++I+  Q   +A E++++ L+L   L P+L   K L  ++  ++ P++ V+S++E TG+ 
Sbjct: 479 NQIALEQAAPYAAEDADITLRLHHCLWPQLQQSKALSWIFTHIEMPLLSVLSRIESTGVL 538

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID+ +L Q S E++  L  LEE  + L+ E FNL+SPKQL  IL+ K + P   KT  G 
Sbjct: 539 IDRAVLAQHSQELTTRLTELEEQAHLLAEEPFNLASPKQLQTILYEKQQLPVLKKTPKGA 598

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L ++   D P+ K +LE+R L+K+K+TY D LP+ IN  + RVHT Y  A T+
Sbjct: 599 PSTDEEVLAELAL-DYPLAKVLLEYRGLAKLKTTYTDKLPSMINPTSGRVHTSYHQAVTV 657

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S EPNLQNIPI+++ G++IR+AFI+PP  ++I+ADYSQIELRI+AH+++ + L +
Sbjct: 658 TGRLSSREPNLQNIPIRSEEGRRIRQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIK 717

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAE+F V++E  + + RR AK INF +IYG+S F LA QL I R EA 
Sbjct: 718 AFTADKDIHRATAAEVFNVSVETATDEQRRSAKAINFGLIYGMSAFGLARQLGIARVEAQ 777

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI  YF R+PG+  Y+E  +      GYV T+ GRR++  +IN+  +  R   ER AIN
Sbjct: 778 HYIDLYFARYPGVANYMEAIRKQAATQGYVTTLSGRRLYLPDINASSAMRRKAAEREAIN 837

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI + AMI +   L+ H+   +M++Q+HDELVFEV E  +  A + I H ME
Sbjct: 838 APMQGTAADIIKSAMIEIDAWLQ-HQPLVRMIMQVHDELVFEVHESVVQGAVEKIRHLME 896

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           +     + L VPL VNI V  NW + +
Sbjct: 897 QTTEKSMPLTVPLCVNIGVGANWDQAH 923


>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
 gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
          Length = 949

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 362/988 (36%), Positives = 565/988 (57%), Gaps = 80/988 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 23  ENPFILVDGSSYLYRAYHAFPPLTNSQ-GEPTGAMYGVLNMLRSLIIQYK----PSHVAV 77

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YK+NRP +P+ L  Q+  +    QA G+P + I G EADD+I T
Sbjct: 78  VFDAKGKTFRDELYEEYKSNRPPMPDDLREQIAPLHEMVQAMGLPLLSISGVEADDVIGT 137

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 138 LALKAAADGRDVLISTGDKDMAQLVTPKITLINTMTNVILGPDEVKEKYGVPPELIIDFL 197

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINASRIKQKKRRENILEY 236
           AL GDS DNIPG+PG+G KTA  LLQ        Y  L+NI   + R   K     + E+
Sbjct: 198 ALMGDSSDNIPGVPGVGEKTALGLLQGLGSLDDIYQQLDNIATLSFR-GAKTLGAKMAEH 256

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A+LS KL  ++TDV +    + L++ + N  +L+      EF + I+ +        
Sbjct: 257 EKVAKLSYKLATIKTDVELDKTFDDLVVSEPNLEQLLEMFTRYEFKRWISDL-------- 308

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                        +N G   +    +     TS+     + ++  N              
Sbjct: 309 -------------QNGGWLAQRSTQKVAVPYTSEAVKSKEASASAN-------------- 341

Query: 357 KLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
               +P I  ++Y  I+  + + +WV+ L+   + +F   TD+++   ++ I +      
Sbjct: 342 ----FPVITQENYEAILTHESLARWVELLKKAPAFAFDTETDSLNNIDARLIGM------ 391

Query: 416 QKDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                SF +E     +I L  H   D+  +     ++L+ LK   E+++ LKIG N+K+D
Sbjct: 392 -----SFAIEPGKAAYIPLR-HEYLDAP-EQLPVNDVLAALKPILEDKNILKIGQNLKFD 444

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           + ++   GI + G   D ML SYVL+S  + HD+ ++A+K L++   T +EI    K  +
Sbjct: 445 RGIMENEGIELNGIHFDTMLESYVLNSVSNRHDMDTLAEKHLNHKTTTFEEIAGKGKGQL 504

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITG 587
             ++I   Q   +A E++++ L L   L P++  +E L HVY  ++ P++ V+S+ME  G
Sbjct: 505 TFNQIEVEQATLYAAEDADITLLLHQALYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKG 564

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  +L   S EI++ L  +E+  + L+G++FNLSSPKQL +ILF KL+ P   KT  
Sbjct: 565 VLIDAQVLAVQSQEITQRLAEIEKETFALAGQEFNLSSPKQLQEILFDKLQLPVIKKTPK 624

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++    + + + ILE R L+K+KSTY D LP  +N +T+RVHT Y  A 
Sbjct: 625 GAPSTNEEVLEEL-AHSHELPRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAV 683

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++ + G++IR+AFI+    K+++ADYSQIELRI+AH+++   L
Sbjct: 684 TATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGL 743

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  A+E+FG+ +E+V+ + RR AK INF +IYG+S F L+ Q+ + R E
Sbjct: 744 LDAFAQGKDIHRATASEVFGIPLEEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGVERRE 803

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+PG+ +Y+E+T+    + GYVET+ GRR++  EINS  +  R  +ER A
Sbjct: 804 AQRYMDLYFERYPGVLDYMERTRKQASEQGYVETLEGRRLYLPEINSKNAIRRKASEREA 863

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMI+V   + +   A   M++Q+HDELVFEV E  +  A+ I++H
Sbjct: 864 INAPMQGTAADIIKKAMIAVDNWICNECPADVHMIMQVHDELVFEVRESYLENAN-IMIH 922

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++ +    L +PLKV + V NNW E
Sbjct: 923 KLMESSM---ELAIPLKVEVGVGNNWDE 947


>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 928

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 356/982 (36%), Positives = 557/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V         
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADV--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                E  +   +K ++ ++   +T  I+  ++P +        
Sbjct: 292 ---------------------ESGKWLQVKGAKPAAKPQETVVID--ESPSE-------- 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 321 -PAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN ++ RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKSGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
 gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
          Length = 921

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 358/975 (36%), Positives = 557/975 (57%), Gaps = 70/975 (7%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVIFD P
Sbjct: 6   LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGAISAIQKLMRRTQP----THMAVIFDTP 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR+ + P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T    A
Sbjct: 61  EPTFRHVLSPIYKGDRPSMPEELSEQIPYLHALIRALGIPLYMLPGAEADDIIGTLAKRA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           E  G  V I + DKD+ QLV+    L D+ K++ +D+  V +K+G+ P +++    L GD
Sbjct: 121 EAAGQQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDVNGVFEKFGVWPNQIIDYLTLMGD 180

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + D I G+PG+G KTAA LL EYG++  IL N  +IK  K  +NI E+A+   L  +L  
Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSIGGILENVDKIK-GKVGQNIKEHADGIALDHQLAS 239

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
           +  D+   +  + L L+D N   L S    LEF + +  +    + ++A  +     I  
Sbjct: 240 IVCDLETGLTFDDLKLQDPNTEALRSLYTELEFRQQLQSLDHPNNPNSATYKQATQHIAK 299

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
           +      I TE   D  ++    SS+ DQ  + N                         Y
Sbjct: 300 SAQSETVINTE---DQAVQ----SSVDDQLGQAN-------------------------Y 327

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +++ +   Q  ++L T    +F   T ++D   ++ +  +++  D +D         +
Sbjct: 328 HTVLSAEQWTQLFKRLSTEKRFAFDTETTSLDYRVAQIVGFSVA-FDAQD-------AYY 379

Query: 429 IDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-F 486
           + L+ H  +++  +  L +E IL+ +K   E+E   KIGH++KYD  VL  +GI ++G +
Sbjct: 380 VPLA-HDYENAPAQ--LDREQILAQIKPILEDESVQKIGHHLKYDAHVLENHGIELKGWY 436

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543
            D ML SYVL++  + H +  +++ +LS+   T +++          ++I       +A 
Sbjct: 437 FDTMLASYVLNAVATRHGMDDVSRLYLSHLTTTFEQVAGKGAKQKTFNQIEIETAAHYAA 496

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E+++V  +L+ +L  KL    +L+++   ++ P+  V++ ME  GI++D   L Q+  E 
Sbjct: 497 EDAHVTYRLFEVLDAKLQKHPELVNILHNVEMPVARVLTIMEENGIELDLGFLDQLGIEF 556

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  + +LE  I +L+G+ FN+SSPKQ+G+ILF KL    G KT TGQ+ T+   LE+I  
Sbjct: 557 ANTMANLESQITELAGQSFNVSSPKQVGEILFDKLGLKGGKKTATGQYSTSESVLEKI-- 614

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D+PI + IL++R LSK+KSTY D L    N  T RVHT Y  A T TGRL+S +PNLQN
Sbjct: 615 -DHPITELILDYRGLSKLKSTYTDGLLKQANSDTHRVHTSYHQALTATGRLSSTDPNLQN 673

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++ ++G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR  A
Sbjct: 674 IPVREEIGRQIRKAFIAPQGRVLLAADYSQIELRLMAHFSQDEALVDAFKHGQDVHRRTA 733

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+ GV +E V+   RR AK +NF ++YG+S F L  QL   R E+  YI +YF R+PG+
Sbjct: 734 AEVLGVALEDVTSDQRRQAKAVNFGLLYGMSEFGLTRQLGFSREESRGYIAKYFQRYPGV 793

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E+T+   R+ G+VETI GRR++  +I +    I+   ERAAINAP+QGSAADI + 
Sbjct: 794 LDYMERTRQIAREQGFVETILGRRLYTPDIMASNKMIKQAAERAAINAPLQGSAADIIKM 853

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPE---EEITTASQIIVHSMEKACLPKINLR 959
           AMI+V + L   K  TKMLLQ+HDELVFEV E   +E+ +    ++ S+       + + 
Sbjct: 854 AMIAVDQMLP--KDQTKMLLQVHDELVFEVDESIADELASKLADVMQSV-------LQIS 904

Query: 960 VPLKVNIKVSNNWQE 974
           VPL V +    NW E
Sbjct: 905 VPLLVEVGKGRNWDE 919


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 376/990 (37%), Positives = 572/990 (57%), Gaps = 82/990 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           LFL+DG + IYRA +A     R    G+  +A+ GF N L ++L   +KE+  +H AV+F
Sbjct: 4   LFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLMEVL---KKEN-PTHIAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A T R+  +  YKA+R  +PE L   LP +    + F IP I   GFEADDII T  
Sbjct: 60  DTDAPTERHTDFEAYKAHREAMPEDLSAALPYIFKLIEGFRIPVITKDGFEADDIIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EKMV 180
             AEK+GF V  ++ DKD  QLVS    +Y   +     E + ++ V+ KW I   E+++
Sbjct: 120 KEAEKKGFQVFCMTPDKDFAQLVSDNIFIYKPARMGNEMEIMGVKEVLAKWEIERVEQVI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GD++DNIPGIPGIG KTA  L+++YG++ENI+ N+  +K  K+REN+  YAE  
Sbjct: 180 DILGLWGDAVDNIPGIPGIGEKTAKALIKQYGSVENIIANSHELK-GKQRENVETYAEQG 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANI 299
            +S+KL  +  +VP+    + L LE+ +   L      LEF  +  RV    ++  A  +
Sbjct: 239 LISKKLATIILNVPVEFDEKALELEEPSRELLEPLFAELEFRTIGKRVFGEGFNRGATMV 298

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                         ++ +T++  +   +T  +     QT        P+   LE  + L+
Sbjct: 299 --------------VSQQTDLFGNVVSETISYVETVVQT-------VPETTELEETKPLN 337

Query: 360 QYPINNDSYT-KIVNTKDIQ-QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
              I N S+  ++ NT +++ + V  L    S SF   T   DA  ++ + ++ S     
Sbjct: 338 T--IENTSHNYQLANTPELRRELVDLLLKQESISFDTETTGTDANLAELVGLSFSIKPG- 394

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  E  +I +               ++I+   +   ENE+ +KIG NIKYD L+L 
Sbjct: 395 -------EGYYIPVPAEMEA--------AQQIVEEFRPVLENENIVKIGQNIKYDMLILK 439

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-------KSRKS--S 527
            YGIS++G   D ML  Y++D   + H++  +++ +L+Y+   I        KS+ +   
Sbjct: 440 WYGISVKGRLFDTMLAHYLIDPD-TRHNMDVLSENYLNYSPISITTLIGPKGKSQGTMRD 498

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQME 584
           +P++K+ D     +A E++++ LQL  +  P   +L  EKL      ++ P+I V++ +E
Sbjct: 499 VPVEKVVD-----YAAEDADITLQLANVFEPLLKQLNAEKLAT---EVENPLIYVLADIE 550

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGA 643
             G++ID D L   S E+  ++   E+++YD  G KFNL+SPKQLG++LF KL+  P   
Sbjct: 551 KEGVRIDMDTLINYSKELELDIRKFEQSVYDKCGIKFNLASPKQLGEVLFDKLQLDPKAK 610

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTGQ++T  +D+       + I+++IL++RQL K+KSTY D+LP  +N +T RVHT +
Sbjct: 611 KTKTGQYQT-GEDVLLALAHKSDIVQDILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSF 669

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762
           + A   TGRL+S  PNLQNIPI+T+ G+++R+AFI       L+SADYSQIELRI+A I+
Sbjct: 670 NQAVAATGRLSSNNPNLQNIPIRTERGREVRKAFIPRDENHILLSADYSQIELRIIADIS 729

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   +   F+N +DIH   AA ++G+ IE+V+P  RR+AK +NF IIYG S F L+  L 
Sbjct: 730 KEENMLDAFKNGIDIHTATAARVYGIAIEEVTPTQRRNAKAVNFGIIYGQSAFGLSQNLG 789

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR EAA+ I++YF ++PGI  Y+  T NF R+NG+VETI GRR +  +INS   ++R  
Sbjct: 790 IPRKEAAEIIEQYFTQYPGIKRYMSDTMNFARENGFVETILGRRRYLRDINSANQTVRGF 849

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAPIQGSAAD+ + AMI++HK ++D  L +KM +Q+HDELVF+V + E+    +
Sbjct: 850 AERNAINAPIQGSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELVFDVLKSEVEAMKK 909

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           II H M+ A    I   VP++V I    NW
Sbjct: 910 IIAHRMKTA----IKTTVPIEVEIGEGENW 935


>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
 gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
          Length = 941

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 375/999 (37%), Positives = 564/999 (56%), Gaps = 92/999 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  LFL+D  + I+R +YA    P ++ K  G   +AI GF N L+ ++   R+E   +H
Sbjct: 5   DKRLFLLDAYALIFRGYYAFIKNPRINSK--GFNTSAIMGFLNSLFDVI---RREQ-PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    T R   +P YKANR + PE +   +P ++    A  IP +  QG+EADD+
Sbjct: 59  LAVVFDVGEATIRTVDFPQYKANREETPEAIREGVPYIQEILNALRIPVLYAQGYEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP- 175
           I T    AE+ G+   +++ DKD  QLVS    +Y         E   +E V +K+ I  
Sbjct: 119 IGTLAKKAEQRGYTTYMVTPDKDFAQLVSEHIKMYKPPAYGRGVEIWGVEEVKEKYQIED 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ L  + GDS+DNIPGIPG+G KTA   ++ YG+LE +L N  ++K  K++EN++E
Sbjct: 179 PIQVIDLLGMMGDSVDNIPGIPGVGEKTAIKFIKTYGSLEGLLANTDQLK-GKQKENVIE 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS+KL  + TDVP+    E L +   N  ++      LEF +++  V   Y+ D
Sbjct: 238 NREQAILSKKLATIITDVPVEFDEEDLTVCPPNLEKVTDLFTELEFRRMLETVYRLYNVD 297

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                 + I++DT  + SQ       + + N E T Q LF    
Sbjct: 298 P---------------------SRINQDTQNEISQ-------SIQKNKETTQQSLFDFTS 329

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQ----------KLETIGSASFKIITDTMDAFHSK 405
           +++   P+N++ +T I NT    Q V           K++T+ S +F   T ++D   +K
Sbjct: 330 EEVI-VPLNSN-FTNISNTDHFYQLVDTPVARRLLIDKMKTLDSFAFDTETTSLDPLEAK 387

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + I+ S  ++           F D                K I+    + F N    KI
Sbjct: 388 LVGISFS-WEKGKGYYLPFPEDFDD---------------AKNIILEFAELFSNPAIEKI 431

Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---- 520
           GHNIKYD  VL++YGI + G   D M+  Y+L+     H++  +++ +L Y    I    
Sbjct: 432 GHNIKYDLKVLYKYGIRIDGENFDTMIAHYLLNPDMR-HNLDVLSETYLGYKPVSIETLI 490

Query: 521 ---LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
               K++K+   +D I  +   E+  E+S+V  QL  +  P+L    L  ++  ++ P++
Sbjct: 491 GKKGKNQKNFREVDLIEQT---EYGTEDSDVTFQLKNIFEPELEKVSLTKLFRNIEMPLM 547

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V++ MEI GI++D D L+Q+S +  + +  LE+ I+  +GE+FNL+SPKQLGDILF KL
Sbjct: 548 KVLATMEIEGIRLDVDFLQQLSKKHQEKIKELEQKIFSEAGEEFNLNSPKQLGDILFDKL 607

Query: 638 KF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           K  P   KTKTGQ+ T  + L ++     PIIKNIL +RQL K+KSTY D+LP  +N  T
Sbjct: 608 KLEPKSKKTKTGQYSTGEEILSKL--AHYPIIKNILHYRQLQKLKSTYIDALPELVNPVT 665

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIEL 755
           QRVHT ++     TGRL+S+ PNLQNIPI+T+ GQ+IR+AFI+  P  K+ISADYSQIEL
Sbjct: 666 QRVHTTFAQTVAATGRLSSVNPNLQNIPIRTEEGQQIRKAFIARNPEYKIISADYSQIEL 725

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R++A +A+   + + F++  DIH   AA+IFGV +++V+ + R  AKT+NF IIYG+S F
Sbjct: 726 RLIAQMAQDPVMVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIYGVSAF 785

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA Q  +  +EA   I  Y+  +P + +YI++     R+NG+VET+  RR +  +INS 
Sbjct: 786 GLAQQTGLSNTEAKKLIDAYYETYPTLKKYIDQQIASARENGFVETLMRRRRYLKDINSR 845

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +++R+  ER A+NAPIQGSAADI + AMI + K L D K ATKMLLQ+HDELVF+ P  
Sbjct: 846 NNTVRSHAERNAVNAPIQGSAADIVKLAMIQIQKEL-DKKFATKMLLQVHDELVFDAPIS 904

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+   S++I  +ME      I + VPL   + V +NW E
Sbjct: 905 EVEEVSKMIKTTMESV----IQMEVPLVAEVGVGDNWLE 939


>gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179]
 gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179]
          Length = 925

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 364/984 (36%), Positives = 554/984 (56%), Gaps = 79/984 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           EN   LVDGSS++YRA++A   L   +  G P  A+ G  NML  LL    KE   +H A
Sbjct: 6   ENPFVLVDGSSYLYRAYHANFRLGLSNSAGEPTGAMYGVLNMLKSLL----KEVNPTHIA 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++  YK++RP +PE L  Q+  +    +A G+P + ++G EADD+I 
Sbjct: 62  VVFDAKGKTFRDEMFEQYKSHRPPMPEDLRQQIQPLHQMIEALGLPLLIVEGVEADDVIG 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  V I + DKD+ QLV     L +T+    +D E VI+K+ +PPE ++ L
Sbjct: 122 TLAKQASAAGREVLISTGDKDMAQLVDDKIMLINTMTNTLLDREGVIEKYEVPPELIIDL 181

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GDS DNIPG+P +G KTA  LLQ  G + +I     ++        KK  + +L  
Sbjct: 182 LALMGDSSDNIPGVPSVGNKTAIALLQGLGGIADIYSQLDKVTDLPIRGAKKLADKLLAG 241

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS KL  ++TDVP+ +  E L L+  N  +LI +    EF + +N          
Sbjct: 242 KEDADLSYKLATIKTDVPLDVTFEQLTLQPENRDQLIEYYARYEFKRWLN---------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                 E+  + T+ T+Q SS            T  K    R  
Sbjct: 292 ----------------------ELLNENTVSTAQNSS------------TMVKATPSREI 317

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + S   ++   Y  I+  + +QQW +KL      +    T++++   +K + ++ + L+ 
Sbjct: 318 QSSAIKVDRSRYQTILTEEQLQQWREKLSNASLFAIDTETNSLNYMQAKLVGLSFA-LEN 376

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     ++  ++D     S          K +L+ LK   E+ +  K+G N+KYD  +L
Sbjct: 377 GEAAYLPLQHHYLDCPQQLS---------WKTVLAALKTVLEDPNIKKVGQNLKYDLTIL 427

Query: 477 HRYGISMRGF-EDIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
            R+G+ ++G   D ML SY LDS GR  H++  +A+++L +     +++    K  +  D
Sbjct: 428 ARHGVELQGVVYDTMLESYTLDSTGR--HNMDDLAKRFLHHDTIHFEDLAGKGKGQLTFD 485

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   +  E+A E+++V  +L  +L P+L     L+ ++  ++ P+  V+++ME  G+ I
Sbjct: 486 QIEIDKAAEYAAEDADVTFKLHQVLWPQLNQTPSLVKLFTEVELPLSQVLARMERNGVLI 545

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D DLL Q S EI+  L+ LE+  + L+G+ FNL+S KQL +ILF KL  P   KT  G  
Sbjct: 546 DSDLLYQQSQEINARLIQLEQQAHQLAGQAFNLASTKQLQEILFGKLGLPVLKKTPKGAP 605

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++   ++ + K ++E R  SK+KSTY D LP  I+  T RVHT Y  A T+T
Sbjct: 606 STNEEVLEEL-AYEHELPKLLVEHRGFSKLKSTYTDKLPQMIDPNTGRVHTSYHQAVTIT 664

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP +++ G+KIR+AFI+P   K+++ADYSQIELRI+AH++    L   
Sbjct: 665 GRLSSSDPNLQNIPTRSEEGRKIRQAFIAPQGFKVVAADYSQIELRIMAHLSADAGLAYA 724

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F + LD+HR  AAE+F V +E+V+ Q R  AK INF +IYG+S F LA QL+IPR+EA  
Sbjct: 725 FSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAINFGLIYGMSAFGLARQLQIPRNEAQT 784

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYFHR+PG+ +++   +   +Q GYVET+ GRR++  E+ S     R   ER AINA
Sbjct: 785 YIDRYFHRYPGVKQFMNDIQEKAKQQGYVETLLGRRLYLPELKSSNGMRRKAAERVAINA 844

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI ++AMI + + + D K   +M++Q+HDELVFEV E+++    +II   ME 
Sbjct: 845 PMQGTAADIIKKAMIDIDRFIAD-KNDIRMIMQVHDELVFEVKEDKVEYYEKIIKDMMEN 903

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + L VPL V +   +NW +
Sbjct: 904 A----VKLSVPLIVEVNFGDNWDQ 923


>gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
          Length = 928

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 362/984 (36%), Positives = 547/984 (55%), Gaps = 76/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL     +   +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLL----VQYSPTHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G AV I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LALEAEKKGHAVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVEQKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           A+ GDS DNIPG+PG+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADLSFRGAKTMAAKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV +  P E L + + +   L +     EF + +            
Sbjct: 241 DVAFLSYQLATIKTDVELDQPCEALTVSEPDVNALQALFSRFEFKRWLT----------- 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                    +  E K +                      Q +K N  Q  Q L  E +  
Sbjct: 290 ---------DLQEGKWL----------------------QGTKSN-RQAQQVLTDEPVAS 317

Query: 358 LSQYPI-NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +    + + D Y  I++ + +  WV+KL+     +F + TD +D   +  + ++ + +  
Sbjct: 318 VEATSLLSADGYITILDQQTLDAWVEKLKNSEVFAFDLETDGLDTLTANIVGLSFA-VAP 376

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     V   ++D      +D+         +L+ LK   E+    K+G N+KYD+ VL
Sbjct: 377 GEAAYLPVAHDYLDAPEQLDRDA---------VLAQLKPLLEDPDASKVGQNLKYDRGVL 427

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
             Y I + G + D ML SY+L+S    HD+ S++ +WL++   T +EI    K+ +  ++
Sbjct: 428 KNYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQ 487

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQID 591
           I+  Q   +A E+++V LQL L + P+L  E     V+E+++ P++ V+S++E  G+ ID
Sbjct: 488 IALEQAAHYAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLID 547

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           Q +L Q S E++  L  LE   ++L+GE FNLSS KQL  ILF K       KT  G   
Sbjct: 548 QAILAQHSKELTSRLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPS 607

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + L ++   D P+ K ILE R LSK+KSTY D LP  IN  + RVHT Y  A T TG
Sbjct: 608 TSEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 666

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ D G++IR+AF++    ++++ADYSQIELRI+AH+++   L   F
Sbjct: 667 RLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAF 726

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  A+E+FGV + KV+ + RR AK INF +IYG+S F L+ QL I   EA  Y
Sbjct: 727 SQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKY 786

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+  Y+E T+     NGYVET+ GRR+   +I S  +  R   ERAAINAP
Sbjct: 787 MDLYFERYPGVLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAP 846

Query: 892 IQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI +RAMI+V   L+     A +M++Q+HDELVFE+  E +  AS+ I   ME 
Sbjct: 847 MQGTAADIIKRAMIAVDDWLQKQTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALMEG 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           +    + L VPL V + V +NW +
Sbjct: 907 S----MALDVPLLVEVGVGDNWDQ 926


>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
 gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
          Length = 928

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 360/980 (36%), Positives = 534/980 (54%), Gaps = 77/980 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+    K+   S  AV+FD
Sbjct: 12  IVLVDGSSYLYRAFHALPPLTTSK-GNPTGAVKGVLNMLKSLI----KQYPQSPMAVVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IY +YKA+RP +P+ L PQ+  +    +A G+P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDIYAEYKAHRPPMPDDLRPQVEPLHDCIRALGLPLLCIEGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G    I + DKD+ QLV+    L +T+K E +D+  V +K+GIPP  ++   AL 
Sbjct: 127 QATEAGRDAVISTGDKDMAQLVNAHITLVNTMKGETLDVAGVEEKFGIPPSLVIDFLALM 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRI-----KQKKRRENILEY-AET 239
           GD +DNIPG+PG+G KTA  LLQ   G L+ I  +  R+     +  K     LE   E 
Sbjct: 187 GDKVDNIPGVPGVGEKTALGLLQGMQGGLDTIYADLERVTTLSFRGAKTMPKKLEANREQ 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +L  ++TD  + + L+ L +   +   L +    LEF   +N +    D      
Sbjct: 247 AFLSYQLATIKTDCELPVGLDDLDIAHPDREALKTLYTELEFKNWLNELLEGRD------ 300

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                     ++ G     +  +     T++ +S +D                       
Sbjct: 301 -------EGVDDVGSGDAVDAAQGPVASTAEATSRTDHV--------------------- 332

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                      IV  +    W+ +L       F + T +++   +  + I +S LD  + 
Sbjct: 333 -----------IVTREAFDAWLARLGEADIFCFDLETTSLNYMEADIVGIGLS-LDAGEA 380

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V   ++D      + S         +L+ LK  +E+    KIG N+KYD  VL RY
Sbjct: 381 AYIPVAHRYLDAPEQLDRAS---------VLAALKPLWEDPAKAKIGQNLKYDISVLARY 431

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535
            I + G  ED ML SYVL++  + HD+ S+A K+L   + + +EI       +  D+I+ 
Sbjct: 432 DIEVAGRLEDTMLASYVLNATATRHDMDSLALKYLGEKTISFEEIAGKGAKQLTFDQIAL 491

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            Q   +A E+ ++ L+L   LRP++  E +L  V + ++ P++ V+S+ME  G+ +D + 
Sbjct: 492 EQAAPYACEDVDITLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAER 551

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   S E+ K L  LE   Y+L+G +FNL SPKQLG+ILF +LK P   KT  G   T  
Sbjct: 552 LHAQSRELEKRLRELETRAYELAGREFNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAE 611

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++   D P+ K I+E R  +K+KSTY D LP  +N  T+R+HT Y  A T TGRL+
Sbjct: 612 AVLEELAL-DYPLPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLS 670

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T+ G+KIR+AF++ P  ++++ADYSQIELRI+AH++    L   F   
Sbjct: 671 SSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEG 730

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AAE+FGV ++ VS + RR AK INF +IYG+S + L  QL I R++A  YI R
Sbjct: 731 RDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDR 790

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  ++E+ +     +GYVET+FGRR++  EIN+   + R   ER AINAP+QG
Sbjct: 791 YFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQG 850

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI V + L +      M++Q+HDELVFEV E ++   +  +   ME A   
Sbjct: 851 TAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEAQVDAFTDAVRQRMEGAA-- 908

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L VPL V     +NW E
Sbjct: 909 --KLDVPLTVEANAGDNWDE 926


>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
 gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
          Length = 932

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 364/991 (36%), Positives = 566/991 (57%), Gaps = 86/991 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPFILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLIIQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YK+NRP +P+ L  Q+  +    QA G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LALKAASDGRNVLISTGDKDMAQLVTPNITLINTMTNVILGPDEVKEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+LE+I     +I        K     ++E+ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGLGSLEDIYQQLDKIATLSFRGAKTLGAKMVEHE 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++TDV +    + L++ + N  +L+      EF + I+ +         
Sbjct: 241 KVAKLSYQLATIKTDVALDKTFDDLVVNEPNLDKLLEMFTRYEFKRWISDL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       +N G   +    +     +++ ++  +Q +  N               
Sbjct: 292 ------------QNGGWLAQRSSRKAPVPYSAEVATPKEQPAADN--------------- 324

Query: 358 LSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +P I+ ++Y  I+  + + +WV+ L+   + +F   TD+++   ++ I +       
Sbjct: 325 ---FPVISQENYESILTHESLMRWVEVLKKAPAFAFDTETDSLNNIDARLIGL------- 374

Query: 417 KDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               SF VE     +I L  H   D+  +     E+L+ LK   E++  LKIG N+K+D+
Sbjct: 375 ----SFAVEPGKAAYIPLR-HDYLDAP-EQLPVDEVLTALKPILEDKTILKIGQNLKFDR 428

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            ++   GI + G + D ML SYVL+S  S HD+ ++A+K L++   T +EI    K  + 
Sbjct: 429 GIMENEGIELNGIYFDTMLESYVLNSVSSRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLT 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I   Q   +A E++++ L L   L P++  +  L HVY  ++ P++ V+S+ME  G+
Sbjct: 489 FNQIEVEQATLYAAEDADITLLLHQALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGV 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  +L   S EI++ L  +E+  + L+G++FNLSSPKQL +ILF KL  P   KT  G
Sbjct: 549 LIDAQVLAMQSQEITQRLAEIEKETFALAGQEFNLSSPKQLQEILFEKLNLPIIKKTPKG 608

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + LE +    + + + ILE R L+K+KSTY D LP  +N +T+RVHT Y  A T
Sbjct: 609 APSTNEEVLEAL-AHSHELPRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVT 667

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI+    K+++ADYSQIELRI+AH+++   L 
Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLL 727

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  A+E+FG+ +++V+ + RR AK INF +IYG+S F L+ Q+ + R EA
Sbjct: 728 DAFAQGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEA 787

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ +Y+E+T+    Q GYVET+ GRR++  EINS  +  R  +ER AI
Sbjct: 788 QRYMDLYFERYPGVLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAI 847

Query: 889 NAPIQGSAADITRRAMISV-----HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           NAP+QG+AADI ++AMI+V     H+  +D      M++Q+HDELVFEV E  +  A+ +
Sbjct: 848 NAPMQGTAADIIKKAMIAVDNWICHECPDD----VHMIMQVHDELVFEVRESYLEKANAM 903

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   ME +    + L +PLKV + V NNW E
Sbjct: 904 IHKLMESS----MELAIPLKVEVGVGNNWDE 930


>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 928

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 358/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+               S S+  + ++ E             
Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP 
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPT 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   ++  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWIQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 367/999 (36%), Positives = 557/999 (55%), Gaps = 77/999 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V         
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMN------- 293

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV      T+N     E +I  +       + + +     + +EQT  K+ ++R   
Sbjct: 294 NANPV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413
                     Y  +   + +Q W++K+  +   +    TD +D+  +  + I+       
Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGISFGLANGD 385

Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463
                L  K+  + + +   +      ++ +T      K++     L+ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---K 518
           KIG NIKYD  +   +G+ + G   D ML SY L+S GR  H++  +A ++L +     +
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIEFE 503

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKP 575
           EI    K+ +  DKI+     ++A E+++V ++L  +L P+L  EK   L+ ++  ++ P
Sbjct: 504 EIAGKGKNQLTFDKIAIDIASQYAAEDADVTMKLHQVLSPEL--EKAPTLVKLFNEIEMP 561

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +++V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFT
Sbjct: 562 LVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFT 621

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL  P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN +
Sbjct: 622 KLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPK 681

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIEL
Sbjct: 682 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIEL 741

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F
Sbjct: 742 RIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF 801

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+ QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S 
Sbjct: 802 GLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSS 861

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +  R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE
Sbjct: 862 NAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEE 920

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   SQ+I   MEKA    I L+VPL   + V +NW E
Sbjct: 921 LIEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955


>gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
 gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
          Length = 921

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 354/983 (36%), Positives = 550/983 (55%), Gaps = 80/983 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDGSS++YRAF+A P L     G P  A+ G   ML KL+    K+    + AV
Sbjct: 5   EKPIILVDGSSYLYRAFHALPPLVTSS-GQPTGAVRGVAAMLRKLI----KDYDPQYMAV 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E++ +YK+ RP +P+ L  Q+  +    +A G+P I   G EADD+I T
Sbjct: 60  IFDAKGKTFRDEMFEEYKSQRPPMPDDLREQVTPLHDLIRAMGLPLIIEDGVEADDVIGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           Y  I   +G  V I + DKD+ QLV+    L +T+ +   DI+ V KK+G+ PE ++   
Sbjct: 120 YARIFGSQGKPVLISTGDKDMAQLVTEQVTLINTMNDALYDIDGVKKKFGVGPELIIDFL 179

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G+LE I  N  ++     R      + + +  
Sbjct: 180 ALMGDKVDNIPGVPGVGEKTALGLLQGLGSLETIYDNLDKVADLSFRGAKTLGKKLEDNK 239

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ D  ++  L  L L+  +  +L  + ++LEF   ++ +    D  A 
Sbjct: 240 EMAFLSYQLATIKLDCDVSDDLNELKLQTPDAEKLAEYYRSLEFKGWLSELLEGQDPAA- 298

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E+ G  +E E D ++ +                               
Sbjct: 299 ------------EDAGKKVELEADSESVLS------------------------------ 316

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ + Y  +++   +  W+  L+     +    T +++   ++ + ++++     
Sbjct: 317 -----IDKEGYETVLDETALNAWIDALKNADVFALDTETTSLNYMQAELVGVSVAV---- 367

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              + K   I    +   + D   K      +L  LK   E+++  K+G N+KYD  VL 
Sbjct: 368 --EAGKAAYIPFGHNYPGAPDQLDKQF----VLDALKPILEDDNLKKVGQNLKYDMSVLA 421

Query: 478 R-YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDK 532
              GI++RG   D ML SYVLDS  + HD+ S+A K+L   + + +EI       +  ++
Sbjct: 422 EDVGITLRGVAYDTMLESYVLDSVATRHDMDSLALKYLGRKTISFEEIAGKGAKQLTFNQ 481

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           +   +   +A E+++V L+L   L PKL  E +L  V+  ++ P++ V+S++E  G  +D
Sbjct: 482 VGLHEASRYAAEDADVTLRLHQTLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVD 541

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LLK  S  ++K +  L+E   +++G++FNLSSPKQLG+IL+ KL+ P   KT  G   
Sbjct: 542 ATLLKHQSQFLAKRMAELQEKACEIAGQEFNLSSPKQLGEILYQKLEIPVIKKTPKGAPS 601

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    L+++   + P+ + I+++R ++K+K+TY D LP  IN+RT RVHT Y  A   TG
Sbjct: 602 TAEAVLQELAL-EYPLPQVIMDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAVAATG 660

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++++ G+KIR+AF++P  +K+++ DYSQIELRI+AH++    L   F
Sbjct: 661 RLSSSDPNLQNIPVRSEEGRKIRQAFLAPKGRKIVACDYSQIELRIMAHLSDDKGLTDAF 720

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           E  LDIHR  AAE++G  +++VS   RR+AK INF +IYG+S F LA QL +PR EA +Y
Sbjct: 721 EKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAFGLAKQLGLPRKEAQEY 780

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R+PG+ +Y+  T+     NGYVET++GRR++  EI+S     R   ERAAINAP
Sbjct: 781 IDLYFERYPGVKKYMADTRALAADNGYVETVYGRRLYLPEIHSKNGQRRQAAERAAINAP 840

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI ++AMI VH  LE      KM++Q+HDELVFEV E+++    + +   ME A
Sbjct: 841 MQGTAADIIKKAMIKVHDWLETTDFDAKMIMQVHDELVFEVAEDQVDDLVREVKARMESA 900

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L+VPL V+  +  NW+E
Sbjct: 901 A----ELKVPLIVDAGIGENWEE 919


>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
 gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
          Length = 933

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 361/983 (36%), Positives = 540/983 (54%), Gaps = 69/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    + IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G++E +  N   I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A +S +L  ++ DV +    E L+    N   LI     L F   +N +         
Sbjct: 241 ANADMSYELATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNELL-------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         +G +   E D  ++   +     S  T ++N+              
Sbjct: 293 --------------EGGSGVVEADEKSSAAGAGSVRSSASTVEMNT-------------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+  +Y  I++      W++KL+     +F   TD++D   +  + ++ +T D+ 
Sbjct: 325 -SAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAT-DEG 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 383 VAAYVPVAHDYLDAPQQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDMSVLA 433

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 434 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +YE ++ P+I V+S++E TG+ ID 
Sbjct: 494 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDD 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 554 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 614 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++    K+++ DYSQIELRI+AH++    L + F+
Sbjct: 673 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 733 QGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + G+VETI+GRR+H  EI S     R   ERAAINAP+
Sbjct: 793 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 853 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESALAEIESKVQELMESA 912

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL       +NW +
Sbjct: 913 A----ELEVPLVAEAGHGDNWDQ 931


>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
 gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
          Length = 935

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 367/985 (37%), Positives = 556/985 (56%), Gaps = 73/985 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----THIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A +    V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLDKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALALLQGIGSMTEIYANLEKVAELPIRGAKKLGEKLLAEKT 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFSRYEFKRWLNEVMNGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQF-SSLSDQTSKINS--EQTPQKLFLERL 355
                    TTE               +K +Q+ ++L  Q S+ NS  E  P      ++
Sbjct: 300 --------QTTEQP-------------VKINQYQATLPAQNSEGNSAVENEP------KI 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q      I+   Y  ++   D+  W++KL      +    TD++D   +  + I+ + L+
Sbjct: 333 Q------IDRTKYEILLTQADLTCWIEKLNAAKLIAVDTETDSLDYMSANLVGISFA-LE 385

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     ++  ++D +  T + ST         L+ +K   EN    KIG NIK+D+ +
Sbjct: 386 NGEAAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPDIHKIGQNIKFDESI 436

Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
             R+GI ++G E D ML+SY L+S GR  H++  +A+++L +     + I    K  +  
Sbjct: 437 FARHGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESIAGKGKGQLTF 494

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I   Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ 
Sbjct: 495 NQIPLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVL 554

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G 
Sbjct: 555 IDSDALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGA 614

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T 
Sbjct: 615 PSTNEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTA 673

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L  
Sbjct: 674 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLIN 733

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A 
Sbjct: 734 AFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQ 793

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AIN
Sbjct: 794 KYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAIN 853

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME
Sbjct: 854 APMQGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHME 912

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL V + V  NW E
Sbjct: 913 AAA----ELVVPLIVEVGVGQNWDE 933


>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
 gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
          Length = 937

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 362/983 (36%), Positives = 540/983 (54%), Gaps = 65/983 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    + IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPGIPG+G KTA  LLQ  G++E +  N   I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGIPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A +S +L  ++ DV +    E L+    N   LI     L F   +N +         
Sbjct: 241 DNADMSYQLATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E     +E +     T   +  SS S  TS +                
Sbjct: 292 -----------LEGGSGVVEADERSAATGAGAVRSSASAATSTVE-------------MN 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+  +Y  I++      W++KL+     +F   TD++D   +  + ++ +T ++ 
Sbjct: 328 TSAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAT-EEG 386

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 387 VAAYVPVAHDYLDAPQQLDRDW---------VLEQLKPILEDDTQAKVGQNLKYDMSVLA 437

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 438 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 497

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +YE ++ P+I V+S++E TG+ ID 
Sbjct: 498 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDD 557

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 558 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPST 617

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 618 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 676

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++    K+++ DYSQIELRI+AH++    L + F+
Sbjct: 677 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 736

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV I++V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 737 QGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 796

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + G+VETI+GRR+H  EI S     R   ERAAINAP+
Sbjct: 797 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 856

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 857 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVQESALAEIESKVQQLMESA 916

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                +L VPL       +NW +
Sbjct: 917 A----DLEVPLVAEAGHGDNWDQ 935


>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
 gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
          Length = 906

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/956 (37%), Positives = 539/956 (56%), Gaps = 71/956 (7%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +P NAI G  NM+  ++    ++  +   AVIFD    TFR+E+Y  YKA+RP +P+ L 
Sbjct: 6   IPTNAIYGVVNMIRSMM----RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV    
Sbjct: 62  CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            L +T+    +D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G
Sbjct: 122 TLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181

Query: 213 NLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            LE +  N  +I        K   + + E    A+LS +L  ++ DV +    + L+ + 
Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQT 241

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +   L+S    L F   +  +               LD  T    GI     +  D   
Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GI-----VTADEQT 277

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           KTS   S++  T+  ++   P+              I+   Y  I+N +D Q W++KL+ 
Sbjct: 278 KTS---SVTVSTAATHAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQ 325

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   TD +D   +  + ++ + + + +     V   ++D      +D        
Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW------- 377

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505
             +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+
Sbjct: 378 --VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435

Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P  ++
Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LI 493

Query: 563 E---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           E   KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+N Y+L+G+
Sbjct: 494 EQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQ 553

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNLSSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K
Sbjct: 554 PFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAK 612

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++
Sbjct: 613 LKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVA 672

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           P   K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR
Sbjct: 673 PHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRR 732

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYV
Sbjct: 733 RAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYV 792

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLAT 918
           ETIFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E +     
Sbjct: 793 ETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRV 852

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K+L+Q+HDELVFEV E  ++     +   ME A      L VPL       +NW++
Sbjct: 853 KLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQ 904


>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
 gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
          Length = 927

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 353/987 (35%), Positives = 537/987 (54%), Gaps = 75/987 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRAF+A P L R   G P +   G    +  +LQ  RK+  A +
Sbjct: 1   MSKPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASPATGAIRGMINMLQALRKDYPADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+ +YP+YKA+R  +P+ L  Q+  +    +  G P + + G EADD+
Sbjct: 60  AACVFDASGPTFRDTLYPEYKAHRAPMPDDLRAQIEPIHQVVRLLGWPVVCVPGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A ++G  V + S DKDL QLV     + DT+  ++ D+  V  ++G+PP  MV
Sbjct: 120 IGTLAACAARQGIEVIVSSGDKDLSQLVDEHITIIDTMSGKRRDVAGVTAEFGVPPSLMV 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             Q L GD++DN+PG+P +G KTAA  L EYG+L+ +L  A  IK     EN+    +  
Sbjct: 180 DYQTLVGDAVDNVPGVPKVGPKTAAKWLNEYGSLDGLLARAGEIKGVAG-ENLRNALDWL 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDC 294
              R+LV +RTD  +   +E L   D          +L  F +   F  L   +  T   
Sbjct: 239 PKGRELVTIRTDCDLAGHVEGLPALDGIAAGALETAQLREFYEKFGFKGLARALEDTTPA 298

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +A    P           G + +   D  TT     F + + Q  ++             
Sbjct: 299 NATATLP-----------GASGDLFADSGTT-----FVAEAAQGREV------------- 329

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                       +Y  I+  ++  +W  +++     +    T+++D   ++ + +     
Sbjct: 330 ------------AYDTILAWEEFDRWFARIQAADLVALDTETNSLDELRAQIVGL----- 372

Query: 415 DQKDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                 SF VE     +I L+ H+  ++  +  L   +L  LK + E+    K+G ++KY
Sbjct: 373 ------SFSVEPGAAAYIPLA-HSGPEAPEQLPLDT-VLERLKPWLEDASRPKLGQHVKY 424

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527
           D+ V   +GI +RG+  D ML SYVL+  R  H++AS+A++    T    +++       
Sbjct: 425 DRHVFANHGIDVRGYAHDTMLQSYVLEVHRP-HNLASLAERHTGRTGISYEDLCGKGAKQ 483

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP  ++   Q   ++ E+S+  L +  +L P +  ++ L     L+    +V+ ++E  G
Sbjct: 484 IPFAQVPVEQAAAYSCEDSDQTLDVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNG 543

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID   L+Q S ++ + +L LE+  YD++G+ FNL SPKQLG+I F KL  P   KT T
Sbjct: 544 VLIDTATLQQQSHDLGQRILRLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGLPVVKKTAT 603

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   D P+   ILE R LSK+K TY D L    + RT RVHT Y+ A 
Sbjct: 604 GARSTDEEVLEKL-AEDYPLPAKILEHRSLSKLKGTYTDKLGQLADPRTGRVHTHYAQAV 662

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRL+S EPNLQNIPI+T  G+++R AF++PP + + SADYSQIELRI+AH++    L
Sbjct: 663 AVTGRLSSNEPNLQNIPIRTAEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGDDAL 722

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F   LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+S F LA  L I    
Sbjct: 723 LRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIDNKA 782

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA YI RYF R+PG+ +Y+++TK   +  GYVET+FGRR++  EINSP    R   ERAA
Sbjct: 783 AAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGRRLYLPEINSPNGPRRGAAERAA 842

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AAD+ ++AM++V   L+  K    M++Q+HDELVFE+PEEE    S  +   
Sbjct: 843 INAPMQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVHDELVFELPEEE----SGWLRTE 898

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +       L+VPL   + +  NW++
Sbjct: 899 VPRLMAGVAELKVPLLAEVGMGPNWEK 925


>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
 gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
          Length = 931

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 351/982 (35%), Positives = 546/982 (55%), Gaps = 71/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS+++RA+++ P L+   +G+   A+ G  NML  LL         SH AVI
Sbjct: 7   NPLVLVDGSSYLFRAYHSPPHLTNA-EGMATGAVYGVVNMLKSLLTQFDP----SHIAVI 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRNE+YP+YKANRP +P+ L  Q+  V  A +A G+P I I G EADD+I T 
Sbjct: 62  FDAKGPTFRNEMYPEYKANRPPMPDDLRCQIEPVHKAVKALGLPLICISGVEADDVIGTI 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  EG AV I + DKD+ QLV     L +T+ +  +D + V  K+G+PPE ++ L  
Sbjct: 122 AKQASAEGRAVLISTGDKDMAQLVDENVTLINTMTDTVLDPQGVKDKFGVPPELIIDLLG 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAE 238
           L GD+ DNIPG+PG+G KTA  LLQ  G++++I  N   I        K   + ++E+ +
Sbjct: 182 LMGDASDNIPGVPGVGAKTALGLLQGLGSIKDIYNNLDAIAPLGFRGSKTLAKKMIEHKD 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +A +S  L  ++ DV   + L+ L + + +   L    + + F + +  +    D     
Sbjct: 242 SAEISYALATIKLDVETGVTLDDLAISETDTDALAELYQQMGFKRWLAALLGGADA---- 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                +      K++  +S SD    +                 
Sbjct: 298 ------------------TKHVYAGKAAKSNSAASESDSNDVV----------------- 322

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   I+  +Y  I+   D  +W++KL+     +F   T +++   ++ + ++ + + + +
Sbjct: 323 APCTIDRSNYETILTQADFDRWLEKLQKAELFAFDTETTSLNYIQAELVGLSFA-VAEGE 381

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V   +ID      +D          +L+ LK   E+ +  K+G N+KYDK VL  
Sbjct: 382 AAYLPVAHDYIDAPEQLDRD---------HVLASLKTLLEDSNAKKVGQNLKYDKSVLAN 432

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           YGI++ G   D M+ SYV +S  + HD+ S+A K+L +   + +EI    K  +  ++I 
Sbjct: 433 YGINLAGIAYDTMIESYVYNSIATRHDMDSLADKYLGHKTISFEEIAGKGKKQLTFNQIE 492

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E+++V L+L  +L PK+  E  L+ ++  ++ P++ ++S +E  G+ ID+ 
Sbjct: 493 LEQASAYAAEDADVTLRLHNVLWPKIEAEPSLVALFNEVELPLVSILSSVERQGVLIDKS 552

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S E+   +L LE   ++++ + FNLSSPKQL +ILF K++ P   KT  G   +T
Sbjct: 553 KLDAQSVELGARMLELEAKAHEIAEQPFNLSSPKQLQEILFVKMELPVIKKTPKGA-AST 611

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+D+ Q    + P+ K ILE+R LSK+KSTY D LP  I ++T RVHT Y  A T TGRL
Sbjct: 612 AEDVLQELALNYPLPKIILEYRSLSKLKSTYTDKLPTLIEEKTGRVHTSYHQAVTATGRL 671

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++   G++IR+AFI     K ++ DYSQIELRI+AH+++   L   F  
Sbjct: 672 SSSDPNLQNIPVRAGEGRRIRQAFIPETGYKYVAVDYSQIELRIMAHLSQDKGLLTAFSE 731

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+F V ++ V+   RR AK INF +IYG+S F L  QL IP+ EA  Y+ 
Sbjct: 732 GKDIHRATAAEVFSVELDDVTSDQRRSAKAINFGLIYGMSAFGLGRQLNIPQKEAKKYMT 791

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+   +  GYVET+ GRR++  EIN+     +   ERAAINAP+Q
Sbjct: 792 RYFERYPGVLTYMDETRKVAKDKGYVETLSGRRLYLPEINARNKMSQMAAERAAINAPMQ 851

Query: 894 GSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G+A+DI ++AMI+V   +E  +  + +ML+Q+HDELVFE+ EE +    +  V  +++  
Sbjct: 852 GTASDIIKKAMINVAGWMETVETNSIRMLMQVHDELVFEIKEEHV----EAYVVKIKELM 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              ++L VPL     V +NW E
Sbjct: 908 AAAMSLDVPLLAEAGVGDNWDE 929


>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
 gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
          Length = 940

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 360/994 (36%), Positives = 557/994 (56%), Gaps = 76/994 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFL+D  + I+R +YA    P ++ K  G+  +AI GF N L  +++  + +  
Sbjct: 1   MSNQKRLFLLDAFALIFRGYYAFIKNPRINSK--GMDTSAIMGFTNSLLDVIKREKPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R  ++ DYKANR + PE +   +P ++   +A  IP IE  GFEA
Sbjct: 57  --HLAVCFDKGGSVSRTAMFTDYKANRDETPEAIRIAVPYIQEILKAMHIPVIEKAGFEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DDII T    AEKE F V +++ DKD  QLVS    +Y   +     + + I+ WGIP  
Sbjct: 115 DDIIGTLAKQAEKEDFKVFMVTPDKDFAQLVSENIFMYRPAR-----MGNGIEIWGIPEV 169

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   PE+++    + GD++DNIPG+PG+G KTA   L+EYG++E +L N   IK  
Sbjct: 170 KAKFEIERPEQVIDYLGMMGDAVDNIPGLPGVGDKTAKKFLKEYGSMEALLENTHEIK-G 228

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +E I    E   LS++L  +  DVP+T   +   L   +   + +  + LEF ++   
Sbjct: 229 KLKEKIEANKELGLLSKELATILLDVPVTFEADSYALTSPDEQAVSALFEELEFRRMAEN 288

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
               +    AN+E       T + K  +  ++       +  QF   +   S   +E + 
Sbjct: 289 FKKIFGAPTANLE-------TPKEKAPSQPSQ-------EGQQFDLFAAPGSGTITESS- 333

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                  +        N+  Y  + +T    Q +++L    S  F   T +++A  ++ +
Sbjct: 334 -------VDNRKNLKTNDHWYQHVNSTLASAQLLKELLQQKSVCFDTETTSLNALEAELV 386

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            IA S          K +  ++ L     +D T       EIL   K FFE+    KIGH
Sbjct: 387 GIAFSW--------NKGKGYYLALP----EDKTE----VLEILDPFKAFFEHPEIEKIGH 430

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----K 522
           N+KYD  VL  Y I ++    D M+  Y+++     H++  +A+ +L+Y+ + I     K
Sbjct: 431 NLKYDLKVLRNYDIHVKAPLFDTMIAHYLINPDMR-HNMDILAETYLNYSAQSITELIGK 489

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K+   + ++S  Q  E+A+E++++ LQL      ++   K L +Y++++ P++ V++ 
Sbjct: 490 KGKNQGTMREVSLEQQTEYAVEDADITLQLKEYFHEEMSTAKTLELYQKVELPLVSVLTN 549

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641
           ME  GI +D   LK +S  +++++  LE  I++++GE FNL+SPKQLG ILF KLK    
Sbjct: 550 MECEGINLDVSFLKSLSVTLAEDIQKLEAAIFEVAGENFNLASPKQLGLILFDKLKLVDK 609

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTGQ+ +TA+D+      D+PII +IL+WR L K+++TY D+LPN IN +T RVHT
Sbjct: 610 PKKTKTGQY-STAEDVLSYLAKDHPIISDILDWRSLQKLQNTYVDALPNEINPKTGRVHT 668

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAH 760
            Y+ A   TGRL+S  PNLQNIPI+T+ GQ++R+AFI       L++ADYSQIELRI+A 
Sbjct: 669 IYNQAVAATGRLSSNNPNLQNIPIRTERGQQVRKAFIPRDENHVLMAADYSQIELRIIAA 728

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    +   F+N+ DIH   A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q
Sbjct: 729 LSGDEGMLSAFQNNEDIHSATASKVFNVPLEEVTREQRGNAKTVNFGIIYGVSAFGLSQQ 788

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             + RSEA + I+ Y+  +P +  Y++   +F R NGYV T+ GRR +  +INS  + +R
Sbjct: 789 TNLNRSEAKELIETYYATYPKLRSYMQDQVDFARDNGYVSTVLGRRRYLKDINSQNAIVR 848

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQGSAADI + AMI++   LE+    +KMLLQ+HDELVF+VP+EEI T 
Sbjct: 849 GAAERNAVNAPIQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDELVFDVPKEEINTL 908

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +++   ME A      + VPL V+I + NNW E
Sbjct: 909 QEMVKKEMENA----FEINVPLIVDIGIGNNWLE 938


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 356/973 (36%), Positives = 549/973 (56%), Gaps = 67/973 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVIFD P
Sbjct: 6   LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGAISAIQKLMRRTQP----THMAVIFDTP 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR+E+ P YK +RP +P  L  Q+P +    +A GIP   + G EADDII T    A
Sbjct: 61  EPTFRHELSPIYKGDRPSMPTELSEQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           E  G  V I + DKD+ QLV+    L D+ KE+ +D++ V +K+G+ P +++    L GD
Sbjct: 121 EAMGHQVLISTGDKDMAQLVTEKVTLEDSFKEKPLDVDGVFEKFGVWPNQIIDYLTLMGD 180

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + D I G+PG+G KTAA LL EYG++  IL N  +IK  K  +NI E+ +   L  +L  
Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSIGGILENVDKIK-GKVGQNIKEHVDGIALDHQLAS 239

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
           +  D+ +    + L L + N   L      LEF   +  +    + + +N +     IN 
Sbjct: 240 IVIDLDLNFGYDDLKLGEPNIETLRHLYTELEFRNQLQSLDHPNNPNNSNYQQAAKSINA 299

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
              K +     ++   ++ +S      DQ                         +   +Y
Sbjct: 300 ---KAVTAPEPLEDHASVTSS-----DDQ-------------------------LGQATY 326

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             ++N +D     ++L T    +F   T ++D   ++ +  +++  D +D         +
Sbjct: 327 HTVLNQQDWDTLFERLSTEKRFAFDTETTSLDYRIAQIVGFSVA-FDAQD-------AYY 378

Query: 429 IDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
           + L+     D  G    L +E IL+ +K   E+E   KIGH++KYD  VL  +GI + G 
Sbjct: 379 VPLA----HDYEGAPEQLNREVILAQIKPILEDESVKKIGHHLKYDAHVLENHGIHLAGW 434

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL S  + H +  +A+ +LS+   T +++          ++I       +A
Sbjct: 435 YFDTMLASYVLYSVATRHGMDDVARLYLSHLTTTYEQVAGRGAKQKTFNQIPLETAAHYA 494

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L+++   ++ P+  V++QME  GI++D   L Q+  E
Sbjct: 495 AEDAHVTYRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGE 554

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            S  + +LE  I +++GE FN+SSPKQ+G++LF KL    G KT TGQ+ T+   LE+I 
Sbjct: 555 FSNTMQNLENQIMEIAGESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKI- 613

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++PI + ILE+R LSK+KSTY D L    N  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 614 --EHPIAQLILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQ 671

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+ ++G++IR+AF++P  + L++ADYSQIELR++AH+++   L   F +  D+HR  
Sbjct: 672 NIPIRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEALLDAFIHGQDVHRRT 731

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ +E+V+   RR AK +NF ++YG+S F L  QL   R E+ DYIK+YFHR+PG
Sbjct: 732 AAEVLGIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQDYIKQYFHRYPG 791

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I++Y+++T+    + G+VET+ GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 792 IYDYMQRTRQVALEQGFVETLLGRRLYTPDIDARNMMVRKAAERAAINAPLQGSAADIIK 851

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V K L   K   KMLLQ+HDELVFEV E+     +  +   M+      + + VP
Sbjct: 852 MAMIEVDKMLP--KDQAKMLLQVHDELVFEVDEDIADELAPKLAEVMQSV----LQISVP 905

Query: 962 LKVNIKVSNNWQE 974
           L V +    NW E
Sbjct: 906 LVVEVGKGKNWDE 918


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 361/984 (36%), Positives = 547/984 (55%), Gaps = 76/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL     +   +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLL----VQYSPTHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G AV I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LALEAEKKGHAVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVEQKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           A+ GDS DNIPG+PG+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADLSFRGAKTMAAKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV +  P E L + + +   L +     EF + +            
Sbjct: 241 DVAFLSYQLATIKTDVELDQPCEALTVSEPDVNALQALFSRFEFKRWLT----------- 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                    +  E K +                      Q +K N  Q  Q L  E +  
Sbjct: 290 ---------DLQEGKWL----------------------QGTKSN-RQAQQVLTDEPVAS 317

Query: 358 LSQYPI-NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +    + + D Y  I++ + +  WV+KL+     +F + TD +D   +  + ++ + +  
Sbjct: 318 VEATSLLSADGYITILDQQTLDAWVEKLKNSEVFAFDLETDGLDTLTANIVGLSFA-VAP 376

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     V   ++D      +D+         +L+ LK   E+    K+G N+KYD+ VL
Sbjct: 377 GEAAYLPVAHDYLDAPEQLDRDA---------VLAQLKPLLEDPDASKVGQNLKYDRGVL 427

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
             Y I + G + D ML SY+L+S    HD+ S++ +WL++   T +EI    K+ +  ++
Sbjct: 428 KNYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQ 487

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQID 591
           I+  Q   +A E+++V LQL L + P+L  E     V+E+++ P++ V+S++E  G+ ID
Sbjct: 488 IALEQAAHYAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLID 547

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           Q +L Q S E++  L  LE   ++L+GE FNLSS KQL  ILF K       KT  G   
Sbjct: 548 QAILAQHSKELTSRLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPS 607

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + L ++   D P+ K ILE R LSK+KSTY D LP  IN  + RVHT Y  A T TG
Sbjct: 608 TSEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 666

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ D G++IR+AF++    ++++ADYSQIELRI+AH+++   L   F
Sbjct: 667 RLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAF 726

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  A+E+FGV + KV+ + RR AK INF +IYG+S F L+ QL I   EA  Y
Sbjct: 727 SQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKY 786

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+  Y+E T+     NGYVET+ GRR+   +I S  +  R   ERAAINAP
Sbjct: 787 MDLYFERYPGVLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAP 846

Query: 892 IQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI +RAMI++   L+     A +M++Q+HDELVFE+  E +  AS+ I   ME 
Sbjct: 847 MQGTAADIIKRAMIALDDWLQKQTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALMEG 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           +    + L VPL V + V +NW +
Sbjct: 907 S----MALDVPLLVEVGVGDNWDQ 926


>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
 gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
          Length = 931

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 367/982 (37%), Positives = 557/982 (56%), Gaps = 70/982 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           LFL+DG + IYRA +A     R    G+  +A+ GF N L ++L    K+   +H AV+F
Sbjct: 4   LFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFTNTLLEVL----KKEQPTHMAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A T R+  +  YKANR  +PE L   LP V+   + F IP I   G+EADD+I T  
Sbjct: 60  DTEAPTERHTGFEAYKANRQAMPEDLAVALPYVKKLIEGFNIPVITSDGYEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EKMV 180
             AEK G+ V  ++ DKD  QLVS    +Y   +     E + ++ V++KW I    +++
Sbjct: 120 KQAEKVGYTVYCMTPDKDFAQLVSENIFIYKPARMGNDMEILGVKEVLEKWEIEHVHQVI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GD++DNIPGIPGIG KTA  L++++G++E I+ N+ ++K  K+REN+  +A+  
Sbjct: 180 DILGLWGDAVDNIPGIPGIGEKTAKALVKQFGSVEQIIANSDQLK-GKQRENVENFADQG 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS++L  +  D P+    E  +++D +   L      LEF  L  RV            
Sbjct: 239 ILSKRLATILLDAPVEFHEEDFLIKDPSKEVLEPLFAELEFRTLGKRVF----------- 287

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                       G +      R ++ +   F S+S+    +       ++   +    +Q
Sbjct: 288 ------------GESFSVAEARPSSGQMDLFGSISENNLPVQKPSVIDEIIPGKNISNTQ 335

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           +     +Y  I   +++Q+  + L      S    T  +DA  ++ + ++ +        
Sbjct: 336 H-----NYILIDKLEELQKLTETLLQQKEVSMDTETTGLDANDAELVGLSFA-------- 382

Query: 421 SFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +K  E  +I +  H       K  L  E L  L+   ENE+  KIG N+KYD ++L  Y
Sbjct: 383 -YKAREAYYIAVPKHE------KGIL--EFLEVLRPLLENENIRKIGQNLKYDYIILKWY 433

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
           GI ++G F D ML  Y+LD   + H++  +++ +L YT     E++   K+ + +  I  
Sbjct: 434 GIELKGEFFDTMLAHYLLDPD-TRHNMDVLSENYLGYTPISITELIGKGKNQLNMRDIDV 492

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++V ++A E+++V LQL  +  P LI  +   + + ++ P+I+V+  ME  G++ID + L
Sbjct: 493 AKVTDYAAEDADVTLQLQQVFEPMLIEAQAEKLAKEVENPLINVLGDMEKEGVKIDVEQL 552

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTA 654
            + S ++  ++  LE  IY  +G +FN++SPKQLG+ILF KL+  P   KTKTGQ++T  
Sbjct: 553 IRFSRDLQDDIGKLENTIYHKAGHRFNIASPKQLGEILFDKLQLDPKAKKTKTGQYQT-G 611

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +D+       + I+K+IL++RQL K+KSTY D+LP  INK+T RVHT Y+ A   TGRL+
Sbjct: 612 EDVLLALANKSDIVKDILDFRQLQKLKSTYVDALPLMINKKTGRVHTSYNQAVAATGRLS 671

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQNIPI+T+ G+++R+AFI       L+SADYSQIELRI+A I+K   +   F  
Sbjct: 672 SNNPNLQNIPIRTEKGREVRKAFIPRDENHILLSADYSQIELRIIAEISKDENMMDAFSK 731

Query: 774 SLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
            LDIH   AA+++GV N+E V+   RR+AK +NF IIYG S F L+  L IPR EAA+ I
Sbjct: 732 GLDIHTATAAKVYGVANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQNLGIPRKEAAEII 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF ++ GI  Y+  T NF R+NGYVETI GRR +  +INS  +++R   ER AINAPI
Sbjct: 792 ENYFEQYKGIKNYMSDTMNFARENGYVETIMGRRRYLRDINSANATVRGFAERNAINAPI 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ + AM+++HK L D KL +KM +Q+HDELVF+V   E     +II+  M+ A 
Sbjct: 852 QGSAADMIKIAMLNIHKDLIDRKLQSKMTMQVHDELVFDVLVTEKDIVKEIIMDRMKNA- 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              I   VP+ V I    NW E
Sbjct: 911 ---IKTTVPIVVEIGEGLNWLE 929


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 366/999 (36%), Positives = 560/999 (56%), Gaps = 77/999 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V      + A
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV      T+N     E +I  +       + + +     + +EQT  K+ ++R   
Sbjct: 296 N--PV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413
                     Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463
                L  K+  + + +   +      ++ +T      K++     L+ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---K 518
           KIG NIKYD  +   +G+ + G   D ML SY L+S GR  H++  +A ++L +     +
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIEFE 503

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKP 575
           EI    K+ +  DKI+     ++A E+++V ++L  +L P+L  EK   L+ ++  ++ P
Sbjct: 504 EIAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPEL--EKAPTLVKLFNEIEMP 561

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +++V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFT
Sbjct: 562 LVEVLSRIERNGVLIDPEKLLAQSAEIEQRLSELEQLVHSEAGEVFNLASTKQLQEILFT 621

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL  P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN +
Sbjct: 622 KLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPK 681

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIEL
Sbjct: 682 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIEL 741

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F
Sbjct: 742 RIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF 801

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+ QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S 
Sbjct: 802 GLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSS 861

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +  R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE
Sbjct: 862 NAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEE 920

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   SQ+I   MEKA    I L+VPL   + V +NW E
Sbjct: 921 LVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 364/997 (36%), Positives = 558/997 (55%), Gaps = 73/997 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++     R        +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLALKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V      + A
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV      T+N     E +I        + + + +     + +EQT  K+ ++R   
Sbjct: 296 N--PV------TQNS----EEKI-------PNNYQATASVPQAVETEQTFAKVEIDR--- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413
                     Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463
                L  K+  + + +   +      ++ +T      K++     L+ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---K 518
           KIG NIKYD  +   +G+ + G   D ML SY L+S GR  H++  +A ++L +     +
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIEFE 503

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMI 577
           EI    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P++
Sbjct: 504 EIAGKGKNQLTFDKIAIDVASKYAAEDADVTMKLHQVLTPELDKTPTLVKLFNEIEMPLV 563

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           +V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFTKL
Sbjct: 564 EVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFTKL 623

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
             P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN++T 
Sbjct: 624 GLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTG 683

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI
Sbjct: 684 RVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRI 743

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F L
Sbjct: 744 MAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGL 803

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           + QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S  +
Sbjct: 804 SNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNA 863

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE +
Sbjct: 864 MRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEELV 922

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              SQ+I   MEKA    I L+VPL   + V +NW E
Sbjct: 923 EHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955


>gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 911

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 361/982 (36%), Positives = 554/982 (56%), Gaps = 89/982 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS+++RA+++ P L+    G    AI G  NML  L+    ++   SH  V
Sbjct: 6   ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVINMLKSLI----RQYDPSHMVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRN++Y +YKANRP +P+ L  Q+  +    +A G P I I+G EADD+I T
Sbjct: 61  IFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +  IA ++   V + + DKD+ QLV+    L +T+ +   D   V++K+G+ PE ++   
Sbjct: 121 FARIATEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD +DNIPG+ G G KTA   L++YG+L+ ++ +AS IK  K  E +    +   LS
Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDHASEIK-GKIGEKLAAALDHLPLS 239

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            +L  ++ DV +   L+   L++ N   LI+     EF + +  +               
Sbjct: 240 YELATIKCDVEVESDLDTFKLQEPNKDELIALYGECEFRRWLAEL--------------- 284

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           LD        +A+ TE                       + + P+              +
Sbjct: 285 LDNPKDAETHLAVPTE-----------------------ATELPK--------------V 307

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            +  Y  I+        +++L +    +F   T ++D   ++ + +           SF 
Sbjct: 308 EDAHYETILTQAQFDTLIEQLNSAELFAFDTETTSLDYMKAQLVGM-----------SFA 356

Query: 424 V---ETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
           V   E +++ L+     D  G    L+ E ++  L     +E+  K+G N+KYDK VL  
Sbjct: 357 VKAGEAVYLPLA----HDYPGAPEQLSLEFVMQKLGPILADENKAKVGQNLKYDKSVLAN 412

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
            G ++ G + D ML SYV +S  + HD+ S+A K+L +   + ++I    K  +  ++I 
Sbjct: 413 AGFALNGIKFDTMLESYVFNSVGTRHDMDSLALKYLGHKNISFEDIAGKGKKQLTFNQIE 472

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +   +A E++++ L+L  +L PK+   EKL  V+E ++ P++ V+S +E TG+ ID +
Sbjct: 473 LEKAAPYAAEDADITLRLHEVLWPKIAADEKLKSVFEDIEMPLVSVISDIERTGVAIDSN 532

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L   S  + + L+ LE+  ++++GE FNLSSPKQL  +LF KL  P   KT  G   +T
Sbjct: 533 MLAAHSMRLGERLIELEKEAFEIAGEPFNLSSPKQLQVLLFEKLGLPIIKKTPKGA-PST 591

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+++ Q    D P+ K I+E R LSK+KSTY D LP  +N++TQRVHT Y  A T TGRL
Sbjct: 592 AEEVLQELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAITATGRL 651

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+++ G++IR AFI+    K+++ADYSQIELRI+AH+++   L   F N
Sbjct: 652 SSTDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFAN 711

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LD+H   AAE+FGV ++ V+  MRR AK +NF +IYG+S F LA QL +PR EA  YI 
Sbjct: 712 GLDVHSATAAEVFGVELDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYID 771

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF RFPG+ EY+E T+    +NGYVETIFGRR+H  EIN+   + R   ERAAINAP+Q
Sbjct: 772 KYFERFPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQ 831

Query: 894 GSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G+AADI ++AM+SV++ + +    T K+L+Q+HDELVFE+  +     ++ I   M +A 
Sbjct: 832 GTAADIIKKAMLSVNRWVHEQAPNTIKLLMQVHDELVFEIKTDCAPEYTKHICELMSQAA 891

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V     +NW++
Sbjct: 892 ----ALDVPLIVEADEGDNWEQ 909


>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
 gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
          Length = 906

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 353/956 (36%), Positives = 539/956 (56%), Gaps = 71/956 (7%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +P NAI G  NM+  ++    ++  +   AVIFD    TFR+E+Y  YKA+RP +P+ L 
Sbjct: 6   IPTNAIYGVVNMIRSMM----RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV    
Sbjct: 62  CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            L +T+    +D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G
Sbjct: 122 TLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181

Query: 213 NLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            LE +  N  +I        K   + + E  + A+LS +L  ++ DV +    + L+ + 
Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQT 241

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +   L+S    L F   +  +               LD  T    G+     +  D   
Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GV-----VTADEQT 277

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           KTS   S++  T+  ++   P+              I+   Y  I+N +D Q W++KL+ 
Sbjct: 278 KTS---SVTVSTAASHAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQ 325

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   TD +D   +  + ++ + + + +     V   ++D      +D        
Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLDRDW------- 377

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505
             +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+
Sbjct: 378 --VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435

Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P  ++
Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LI 493

Query: 563 E---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           E   KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+N Y+L+G+
Sbjct: 494 EQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQ 553

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNLSSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K
Sbjct: 554 PFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAK 612

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++
Sbjct: 613 LKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVA 672

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           P   K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR
Sbjct: 673 PHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRR 732

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYV
Sbjct: 733 RAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYV 792

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLAT 918
           ETIFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E +     
Sbjct: 793 ETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRV 852

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K+L+Q+HDELVFEV E  ++     +   ME A      L VPL       +NW +
Sbjct: 853 KLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWDQ 904


>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
 gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
          Length = 920

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 352/981 (35%), Positives = 550/981 (56%), Gaps = 84/981 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS++YRA++A P L+    G    A+ G  NM+ +LL    K+   S   VIFD
Sbjct: 9   IVLVDGSSYLYRAYHALPPLTNSK-GQATGAVKGVINMIRRLL----KDHPGSPSVVIFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IYP+YKA+RP +P+ L  Q+  +    +A G+P I I G EADD+I TY  
Sbjct: 64  AKGKTFRDDIYPEYKAHRPPMPDDLREQIEPIHNIIKAMGLPLIIIDGVEADDVIGTYAR 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V + + DKD+ QLV+    L +T+ +  +D E V+ K+GIPP  ++   AL 
Sbjct: 124 QATEQGLDVIVSTGDKDMAQLVNKHITLVNTMNDTVMDEEGVLVKFGIPPSLIIDYLALI 183

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240
           GD +DNIPG+ G+G KTA  LLQ  G+++ I  N  ++ +      K     + +  E A
Sbjct: 184 GDKVDNIPGVAGVGEKTALGLLQGIGSIDEIFANLDKVPELPIRGAKTLSAKLEKEKEVA 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +L  ++ DV +   +E L + + +   L+++ + +EF   +  +    +   + + 
Sbjct: 244 YLSYELATIKLDVDLPDSIESLAMVEPDSELLLTYFEDMEFKSWVEDL----EKGGSGLP 299

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P            +A+ +E                     I    TP             
Sbjct: 300 P----------PAVAVSSE--------------------AIAEPPTP------------- 316

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P   D Y  ++   D  +W+ KLE     +F   T +++   ++ + +           
Sbjct: 317 -PACVD-YQLVLTEHDFSRWLTKLEAAPYFAFDTETTSLNYMEARVVGV----------- 363

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
           SF VE       V    D  G      E  +L+ LK   E+    K+G N+KYD+ VL  
Sbjct: 364 SFAVEAGSA-AYVPFGHDYVGVEQQLSEDWVLAQLKPLLEDSSRAKVGQNLKYDRNVLAN 422

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           +GI + G + D ML SYVL+S  + HD+ S+A+K+L       ++I       +  ++I 
Sbjct: 423 HGIELNGIQFDTMLESYVLNSTATRHDMDSLARKYLDVGTIKFEDIAGKGAKQLTFNQIQ 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E++++ LQL  +L PKL  ++ L+ V++ ++  ++ V+S++E  G  + +D
Sbjct: 483 LQQAGPYAAEDADITLQLHEVLWPKLAAIDSLMSVFQTIELSLVPVLSRIERNGALVSRD 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL + SAE+   L  LE+  ++L+GE FNLSSPKQLG ILF KL+ P   KT  G   T 
Sbjct: 543 LLNKQSAELGTRLQQLEKEAHELAGEAFNLSSPKQLGHILFDKLELPVIKKTPKGAASTA 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L ++   D P+ + ++E+R LSK+KSTY D LP  I++ T R+HT Y  A T TGRL
Sbjct: 603 EEVLAELAL-DYPLPRILMEYRGLSKLKSTYTDKLPQMISEVTGRIHTSYHQAVTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T+ G+K+R+AF++    K+++ADYSQIELRI+AH+++   L + F  
Sbjct: 662 SSSDPNLQNIPIRTEEGRKVRQAFVARDGYKIVAADYSQIELRIMAHLSQDNGLLKAFAE 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH+  AAE+FG+ +E+VS + RR AK INF +IYG+S F LA Q+ + R EA +YI 
Sbjct: 722 GKDIHQATAAEVFGLELEQVSTEQRRRAKAINFGLIYGMSAFGLAKQIDVGRHEAQEYID 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+ +Y++ T+    + GYVET++GRR++  EIN+     R   ER AINAP+Q
Sbjct: 782 TYFSRYPGVRDYMDNTRADAAERGYVETLYGRRLYLPEINASNGMRRQAAERTAINAPMQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AM+ V + L +  +  +M++Q+HDELVFEV E  +      +V S+     
Sbjct: 842 GTAADIIKKAMVDVDRWLLESDVDGQMIMQVHDELVFEVAEPSL----DYLVSSVNDLMS 897

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             + L VPL V++ + +NW E
Sbjct: 898 GAVVLDVPLIVDVGIGSNWDE 918


>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
 gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
          Length = 950

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 369/985 (37%), Positives = 547/985 (55%), Gaps = 74/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRAF+A P L+   +G P  A+ G  NML  L+   +     SH AV
Sbjct: 24  ENPLVLVDGSSYLYRAFHAFPPLTNS-NGEPTGAMYGVLNMLKSLISQVQP----SHIAV 78

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T
Sbjct: 79  VFDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D   VI+K+GIPPE ++   
Sbjct: 139 LARQASQNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYL 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L   
Sbjct: 199 ALMGDSSDNIPGVSGVGEKTALRLLQGIGSMAQIYANLDKVAELPIRGAKKLGEKLLAEK 258

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV +    + L L D +   LI +    EF + +  V         
Sbjct: 259 DMADLSYALATIKTDVALAFSPQELALGDSDNDALIEYFGRYEFKRWLGEV--------- 309

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQ-KLFLERL 355
                   +N T +             T  T        Q+ KIN  Q TP  K     +
Sbjct: 310 --------MNGTNS------------VTQPT--------QSVKINPYQATPVVKTDESAV 341

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +   ++ I+   Y  I+   D+ +WV+KL      +    TD +D   +  + ++ +   
Sbjct: 342 ENSVKFKIDRSRYENILTEADLARWVEKLSAEKLIAVDTETDGLDYMSANLVGVSFAL-- 399

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +  + ++        L +H       K       L+ LK   EN +  K+G N+K+D  +
Sbjct: 400 ENGEAAY--------LPLHLDYLGAPKTLEKSTALAALKPILENPNIGKVGQNLKFDMTI 451

Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
             R GI +RG E D ML+SY LDS GR  H++  +A+++L +     ++I    K+ +  
Sbjct: 452 FARNGIELRGIEFDTMLLSYTLDSTGR--HNMDDLAKRYLGHQTIGFEDIAGKGKNQLTF 509

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I   Q  E+A E+++V ++L  +L  KL  +  L+ +Y+ ++ P++ V+S+ME  G+ 
Sbjct: 510 NQIPLEQAGEYAAEDADVTMKLQQVLWGKLQSQPSLVELYQSIELPLLGVLSRMERCGVL 569

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L   S EI++ L +LE   ++L+G+ FNL+S KQL +ILF KL  P   KT  G 
Sbjct: 570 IDSDALFLQSNEITERLTALEMQAHELAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGA 629

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T    LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T 
Sbjct: 630 PSTNEDVLEEL-AYSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTA 688

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+I+ADYSQIELRI+AH++    L  
Sbjct: 689 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDAGLIN 748

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAEIFG+ +E+V+ + RR+AK INF +IYG+S F L+ QL I R++A 
Sbjct: 749 AFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGISRADAQ 808

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+PG+  ++   +   +  GYVET+FGRR++  EINS  +  R   ER AIN
Sbjct: 809 RYMDLYFQRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAERVAIN 868

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI + AMI + +   D      M++Q+HDELVFEV  E+I   S +I   ME
Sbjct: 869 APMQGTAADIIKCAMIKLDEITRDDP-DIHMIMQVHDELVFEVRSEKIAFFSDLIKQHME 927

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL V++ V  NW E
Sbjct: 928 AAA----ELVVPLIVDVGVGENWDE 948


>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 928

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 358/982 (36%), Positives = 551/982 (56%), Gaps = 72/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+               S S+  + ++ E             
Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL V +    NW +
Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926


>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
 gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
          Length = 949

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 364/991 (36%), Positives = 565/991 (57%), Gaps = 86/991 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 23  ENPFILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLIIQYK----PSHVAV 77

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YK+NRP +P+ L  Q+  +    QA G+P + I G EADD+I T
Sbjct: 78  VFDAKGKTFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGT 137

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 138 LALKAASDGRNVLISTGDKDMAQLVTPNITLINTMTNVILGPDEVKEKYGVPPELIIDFL 197

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+LE+I     +I        K     ++E+ 
Sbjct: 198 ALMGDSSDNIPGVPGVGEKTALGLLQGLGSLEDIYQQLDKIATLSFRGAKTLGAKMVEHE 257

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++TDV +    + L++ + N  +L+      EF + I+ +         
Sbjct: 258 KVAKLSYQLATIKTDVALDKTFDDLVVNEPNLDKLLEMFTRYEFKRWISDL--------- 308

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       +N G   +    +     +++ ++  +Q +  N               
Sbjct: 309 ------------QNGGWLAQRSSRKAPVPYSAEVATPKEQPAADN--------------- 341

Query: 358 LSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +P I+ ++Y  I+  + + +WV+ L+   + +F   TD+++   ++ I +       
Sbjct: 342 ---FPVISQENYESILTHESLMRWVEVLKKAPAFAFDTETDSLNNIDARLIGL------- 391

Query: 417 KDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               SF VE     +I L  H   D+  +     E+L+ LK   E++  LKIG N+K+D+
Sbjct: 392 ----SFAVEPGKAAYIPLR-HDYLDAP-EQLPVDEVLTALKPILEDKTILKIGQNLKFDR 445

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            ++   GI + G + D ML SYVL+S  S HD+ ++A+K L++   T +EI    K  + 
Sbjct: 446 GIMENEGIELNGIYFDTMLESYVLNSVSSRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLT 505

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I   Q   +A E++++ L L   L P++  +  L HVY  ++ P++ V+S+ME  G+
Sbjct: 506 FNQIEVEQATLYAAEDADITLLLHQALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGV 565

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  +L   S EI++ L  +E+  + L+G++FNLSSPKQL +ILF KL  P   KT  G
Sbjct: 566 LIDAQVLAMQSQEITQRLAEIEKETFALAGQEFNLSSPKQLQEILFEKLNLPIIKKTPKG 625

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + LE +    + + + ILE R L+K+KSTY D LP  +N +T+RVHT Y  A T
Sbjct: 626 APSTNEEVLEAL-AHSHELPRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVT 684

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI     K+++ADYSQIELRI+AH+++   L 
Sbjct: 685 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLL 744

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  A+E+FG+ +++V+ + RR AK INF +IYG+S F L+ Q+ + R EA
Sbjct: 745 DAFAQGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEA 804

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ +Y+E+T+    Q GYVET+ GRR++  EINS  +  R  +ER AI
Sbjct: 805 QRYMDLYFERYPGVLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAI 864

Query: 889 NAPIQGSAADITRRAMISV-----HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           NAP+QG+AADI ++AMI+V     H+  +D      M++Q+HDELVFEV E  +  A+ +
Sbjct: 865 NAPMQGTAADIIKKAMIAVDNWICHECPDD----VHMIMQVHDELVFEVRESYLEKANAM 920

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   ME +    + L +PLKV + V NNW E
Sbjct: 921 IHKLMESS----MELAIPLKVEVGVGNNWDE 947


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/973 (36%), Positives = 547/973 (56%), Gaps = 67/973 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVIFD P
Sbjct: 6   LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGAISAIQKLMRRTQP----THMAVIFDTP 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR+E+ P YK +RP +P  L  Q+P +    +A GIP   + G EADDII T    A
Sbjct: 61  EPTFRHELSPIYKGDRPSMPTELSEQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           E  G  V I + DKD+ QLV+    L D+ KE+ +D++ V +K+G+ P +++    L GD
Sbjct: 121 EAMGHQVLISTGDKDMAQLVTEKVTLEDSFKEKPLDVDGVFEKFGVWPNQIIDYLTLMGD 180

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + D I G+PG+G KTAA LL EYG++  IL N  +IK  K  +NI E+ +   L  +L  
Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSIGGILENVDKIK-GKVGQNIKEHVDGIALDHQLAS 239

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
           +  D+ +    + L L + N   L      LEF   +  +    + + +N +     IN 
Sbjct: 240 IVIDLDLNFGYDDLKLGEPNVETLRHLYTELEFRNQLQSLDHPNNPNNSNYQQAAKSINA 299

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
              K +     ++   ++ +S      DQ                         +   +Y
Sbjct: 300 ---KAVTAPEPLEDHASVTSS-----DDQ-------------------------LGQATY 326

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +++ +D     ++L T    +F   T ++D   ++ +  +++         F  +  +
Sbjct: 327 HTVLSQQDWDTLFERLSTEKRFAFDTETTSLDYRIAQIVGFSVA---------FDAQNAY 377

Query: 429 IDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               V  + D  G    L +E IL+ +K   E+E   KIGH++KYD  VL  +GI + G 
Sbjct: 378 Y---VPLAHDYEGAPEQLNREVILAQIKPILEDESVKKIGHHLKYDAHVLENHGIHLAGW 434

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL+S  + H +  +A+ +LS+   T +++          ++I       +A
Sbjct: 435 YFDTMLASYVLNSVATRHGMDDVARLYLSHLTTTYEQVAGKGAKQKTFNQIPLETAAHYA 494

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L+++   ++ P+  V++QME  GI++D   L Q+  E
Sbjct: 495 AEDAHVTYRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGE 554

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            S  + +LE  I +++GE FN+SSPKQ+G++LF KL    G KT TGQ+ T+   LE+I 
Sbjct: 555 FSNTMQNLENQIMEIAGESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKI- 613

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++PI + ILE+R LSK+KSTY D L    N  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 614 --EHPIAQLILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQ 671

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+ ++G++IR+AF++P  + L++ADYSQIELR++AH+++   L   F +  D+HR  
Sbjct: 672 NIPIRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEALLDAFIHGQDVHRRT 731

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ +E V+   RR AK +NF ++YG+S F L  QL   R E+ DYIK+YFHR+PG
Sbjct: 732 AAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQDYIKQYFHRYPG 791

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I++Y+++T+    + G+VET+ GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 792 IYDYMQRTRQVALEQGFVETLLGRRLYTPDIDARNMMVRKAAERAAINAPLQGSAADIIK 851

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V K L   K   KMLLQ+HDELVFEV E+     +  +   M+      + + VP
Sbjct: 852 MAMIEVDKMLP--KDQAKMLLQVHDELVFEVDEDIADELAPKLAEVMQSV----LQISVP 905

Query: 962 LKVNIKVSNNWQE 974
           L V +    NW E
Sbjct: 906 LVVEVGKGKNWDE 918


>gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 368/1002 (36%), Positives = 557/1002 (55%), Gaps = 83/1002 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V      + A
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV      T+N     E +I  +       + + +     + +EQT  K+ ++R   
Sbjct: 296 N--PV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS----- 412
                     Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 413 ------------TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
                       TL+ +    F  +    +    TS +   K       L+ LK   EN 
Sbjct: 386 ACYIPLMHKEQVTLEPQQSDLFAEQA---EAETTTSFELAKKQLNLTACLTELKPLLENA 442

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR- 517
              KIG NIKYD  +   +G+ + G   D ML SY L+S GR  H++  +A ++L +   
Sbjct: 443 DVKKIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTI 500

Query: 518 --KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERL 572
             +EI    K+ +  DKI+     ++A E+++V ++L  +L P+L  EK   L+ ++  +
Sbjct: 501 EFEEIAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPEL--EKAPTLVKLFNEI 558

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+++V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +I
Sbjct: 559 EMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEI 618

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LFTKL  P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  I
Sbjct: 619 LFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMI 678

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N +T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQ
Sbjct: 679 NPKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQ 738

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+
Sbjct: 739 IELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGM 798

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI
Sbjct: 799 SEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEI 858

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S  +  R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV
Sbjct: 859 KSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEV 917

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EE +   SQ+I   MEKA    I L+VPL   + V +NW E
Sbjct: 918 KEELVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955


>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
 gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
          Length = 916

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/984 (35%), Positives = 555/984 (56%), Gaps = 86/984 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS++YRAF+A P +    DG P NA  G  +M+  L+    K    S   +IFD
Sbjct: 1   MVLVDGSSYLYRAFHAIPPM-HTSDGQPTNATRGVISMIRSLI----KTYPDSPMVIIFD 55

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EIY +YKA+RP +P+ L PQ+  +    +A G+P + + G EADD+I T   
Sbjct: 56  AKGKTFRDEIYSEYKAHRPPMPDDLRPQIEPIHRVVEAMGLPLVIVDGVEADDVIGTIAK 115

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              ++G  V + + DKD+ QLV+    L +T+    +DI+ V  K+GIPPE ++   AL 
Sbjct: 116 QVGEQGREVVVSTGDKDMAQLVTDKVTLVNTMNNTVMDIQGVKDKFGIPPELIIDYLALM 175

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETA 240
           GD +DNIPG+PG+G KTA  LLQ  G++++I      I        K  ++ + +  E A
Sbjct: 176 GDKVDNIPGVPGVGEKTALALLQGLGSIKDIYTRLDEIADLGFRGSKTMKQKMEDNKEMA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS  L  ++ DV +    + L   + +  +L  +   LEF   +               
Sbjct: 236 ELSYTLATIKCDVELPFEPQELKNGEADKEKLREWFTKLEFKTWL--------------- 280

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                            +++D+  +++T+     SD     +SEQ  Q           +
Sbjct: 281 -----------------SDLDKAPSVETA-----SDTVGNASSEQNGQ----------VE 308

Query: 361 YPINND---SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            P+ +D   +Y  +++     +W++K++     +F   T +++   ++ + ++ S   + 
Sbjct: 309 IPVKSDLEANYETVLDKASFNKWLEKIQAAELVAFDTETTSLNYMAAELVGLSFSV--EA 366

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475
            + ++          V  + D  G    L ++ +L  LK + E++   K+G ++KYD  V
Sbjct: 367 GEAAY----------VPVAHDYEGAPEQLDRDWVLEQLKPWLEDDSKAKVGQHLKYDANV 416

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L+ Y I++RG   D ML SYV +S  S HD+ ++A K+L +T    ++I          +
Sbjct: 417 LNNYQITLRGIAYDTMLESYVYNSVSSRHDMNTLASKFLGHTCVSFEDIAGKGAKQKTFN 476

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I       +A E++++ L+L   + PK+    +L+ +++ ++ P+I V+++ME TG  I
Sbjct: 477 QIDLEVAAFYAAEDADITLRLHQAIWPKIETTPELVSIFKDIECPLIPVLAKMEQTGALI 536

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D +LL   S+EI+  L  LE   ++ +GE FNLSSPKQL  ILF K   P   KT  GQ 
Sbjct: 537 DPELLHAQSSEIAAKLQELEIKAHEEAGESFNLSSPKQLQVILFEKQGLPVIKKTPKGQ- 595

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA+ + Q    D  + + I+E R LSK+KSTY D LP  I K T R+HT Y  A T T
Sbjct: 596 PSTAEPILQELAQDYELPRLIMEHRSLSKLKSTYTDKLPEMIQK-TGRIHTSYHQAITAT 654

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI++  G++IR+AFI+P   KL++ADYSQ+ELRI+AH+++ + L   
Sbjct: 655 GRLSSTDPNLQNIPIRSAEGRRIRQAFIAPKGYKLVAADYSQVELRIMAHLSQDSGLLDA 714

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    D+H+  AAE+F V++++V+ + RR AK INF +IYG+S F LA QL I R EA  
Sbjct: 715 FTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAGK 774

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIKRYF R+PG+ +Y+E T+   ++ GYVETI+GRR++  +I +  + +R   ER AINA
Sbjct: 775 YIKRYFERYPGVQQYMENTREGAKEKGYVETIYGRRLYLPDIKAKNAMMRQAAERTAINA 834

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QGSAADI +RAMI +H  L+   L  KM++Q+HDEL+FEV E+++  A + IV  M+ 
Sbjct: 835 PMQGSAADIIKRAMIKMHDWLQGTDLDVKMIMQVHDELIFEVAEKDLEAAQKKIVDIMQN 894

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           +      + VPL V   V +NW E
Sbjct: 895 SS----KIDVPLLVEAGVGDNWDE 914


>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 927

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 350/989 (35%), Positives = 539/989 (54%), Gaps = 75/989 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRAF+A P L R   G P +   G    +  +LQ  R++  A +
Sbjct: 1   MSKPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASPATGAIRGMINMLQALRRDYPADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+ +YP+YKA+R  +P+ L  Q+  +    +  G P + + G EADD+
Sbjct: 60  AACVFDASGPTFRDTLYPEYKAHRAPMPDDLRAQIEPIHQVVRLMGWPVVCVPGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A ++G  V + S DKDL QLV     + DT+  ++ D+  V  ++G+PP  MV
Sbjct: 120 IGTLAACAARQGIEVIVSSGDKDLSQLVDEHITIIDTMSGKRRDVAGVTAEFGVPPTLMV 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             Q L GD++DN+PG+P +G KTAA  L EYG+L+ +L  A  IK     EN+    E  
Sbjct: 180 DYQTLVGDAVDNVPGVPKVGPKTAAKWLNEYGSLDGLLARAGEIKGVAG-ENLRGALEWL 238

Query: 241 RLSRKLVMLRTDVPIT-----IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              R+LV +RTD  +      +P L  + +   +   L  F +A  F             
Sbjct: 239 PKGRELVTIRTDCDLAGHVDGLPDLAGVAMGASDNAALRDFYQAYGF------------- 285

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                            KG+A   + D    +  +  ++L   +  + +  +P+  F+  
Sbjct: 286 -----------------KGLARALQDD----LPANATATLPGASGDLFA--SPETTFVAE 322

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
             +  +      +Y  ++  +D  +W+++++     +    T ++D   ++ + +     
Sbjct: 323 AAQGREV-----AYDTVLTWEDFDRWLERIQGAELVALDTETTSLDELRAEIVGL----- 372

Query: 415 DQKDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                 SF VE     +I L+ H+  D+  +  L   +L  LK + E+    K+G ++KY
Sbjct: 373 ------SFSVEPGAAAYIPLA-HSGPDAPEQLPLDA-VLERLKPWLEDGSRAKLGQHVKY 424

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527
           D+ V   + I +RG+  D ML SYVL+     H++AS+A++    T    +++       
Sbjct: 425 DRHVFANHDIGVRGYVHDTMLQSYVLEV-HKPHNLASLAERHTGRTGISYEDLCGKGAKQ 483

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP  ++   Q   ++ E+S+  L +  +L P +  ++ L     L+    +V+ ++E  G
Sbjct: 484 IPFAQVPVEQAAAYSCEDSDQTLDVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNG 543

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID   L+Q S ++ + +L LE+  YD++G+ FNL SPKQLG+I F KL  P   KT T
Sbjct: 544 VLIDPATLQQQSHDLGQRILKLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGLPVVKKTAT 603

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   D P+   ILE R LSK+K TY D L    + RT RVHT Y+ A 
Sbjct: 604 GARSTDEEVLEKL-AEDYPLPAKILEHRSLSKLKGTYTDKLSQLADPRTGRVHTHYAQAV 662

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRL+S EPNLQNIPI+T  G+++R AF++PP + + SADYSQIELRI+AH++    L
Sbjct: 663 AVTGRLSSNEPNLQNIPIRTSEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGDDAL 722

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F   LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+S F LA  L I    
Sbjct: 723 LRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIDNKA 782

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA YI RYF R+PG+ +Y+++TK   +  GYVET+FGRR++  EINSP    R   ERAA
Sbjct: 783 AAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGRRLYLPEINSPNGPRRGAAERAA 842

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AAD+ ++AM++V   L+  K    M++Q+HDELVFE+PEEE       I   
Sbjct: 843 INAPMQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVHDELVFELPEEEAGWLRTEIPRL 902

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M         L+VPL   +    NW++ +
Sbjct: 903 MAGVA----ELKVPLLAEVGTGPNWEKAH 927


>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
 gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
          Length = 905

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 358/976 (36%), Positives = 539/976 (55%), Gaps = 84/976 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P   R  +  P  A+ G  NML +L     K+  A + A +FD
Sbjct: 4   LLLVDGSSYLYRAFHALPDF-RNRNNEPTGAVYGVLNMLRRL----HKDYQADYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E+Y +YKANRP +P+ L  Q+  +     A G P + ++G EADD+I T   
Sbjct: 59  AKGKTFRDELYAEYKANRPPMPDELAAQIAPLLECINAMGWPMLSVEGVEADDVIGTLVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE E     I + DKD+ QLV+P   L +T+  E +D   V+ ++G+PPE+M+   AL 
Sbjct: 119 QAEGENMRCIISTGDKDIAQLVNPQVTLVNTMTNEMLDEAGVLGRFGVPPERMLDYLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DNIPG+  +G KTA   L +YG L+N+L++A  I      EN+         SR+L
Sbjct: 179 GDAVDNIPGVAKVGPKTAVKWLNQYGTLDNLLVHAGEIGGVVG-ENLRNALGWLSRSRQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           + ++ DV + + L  L  +  +  +L    + L+F   +  +                  
Sbjct: 238 LSIKCDVSLPVSLHDLGPQPPDMVKLAELYERLDFKSWLRELQ----------------- 280

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                               + SQ    +D  S+          F      L Q      
Sbjct: 281 --------------------QESQAEGAADALSRG---------FAPAGSNLVQA----- 306

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425
            Y  I+  + + +W+ ++     AS    T  +D   ++ + I           SF VE 
Sbjct: 307 DYQTILTPEQLDEWMMRIAAAPLASLDTETTGLDPMRAELVGI-----------SFSVEP 355

Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I L    +     +      +L  LK +  +    K+G N+K+D+ V   +GI +
Sbjct: 356 HHGAYIPLGHRYT--GVPRQLPLDFVLEKLKPWLTDPSAPKLGQNLKFDRHVFANHGIGL 413

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQ 539
           +G   D +L SYV +S R  HD+ ++A + L   + T  E+     + I  +++   +  
Sbjct: 414 KGIVHDTLLQSYVFESHRP-HDMDNLALRHLGIKTITYDEVTGKGAARIGFEQVDIERAA 472

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A E+++V LQL   L  ++  + KL H+Y  L+ P++DV+ +ME  G+ +D  LL+  
Sbjct: 473 QYAAEDADVTLQLHQHLYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQ 532

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+ + +L+LEE    ++G  FNL+SPKQ+ +ILF +LK P   KT +G   +T +D+ 
Sbjct: 533 SRELGEKMLALEERACTIAGLPFNLNSPKQIQEILFDRLKLPVMKKTPSGV-PSTDEDVL 591

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D P+ + +L++R L+K+KSTY D LP  ++  T RVHT Y+ A  +TGRLAS EP
Sbjct: 592 QKLALDYPLARALLDYRGLAKLKSTYTDKLPRMVHPVTGRVHTNYAQAVAVTGRLASNEP 651

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T  G++IR AFI+P   ++ISADYSQIELRI+AHI++   L + F    DIH
Sbjct: 652 NLQNIPIRTAEGRRIREAFIAPSGYRIISADYSQIELRIMAHISQDAGLLKAFAQGEDIH 711

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R   +EIFGV +E V+ + RR+AK INF +IYG+S F LATQL I R+ A  Y+ RYF R
Sbjct: 712 RATGSEIFGVPLETVNSEQRRYAKIINFGLIYGMSEFGLATQLGIERAAARTYMDRYFSR 771

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +Y+++T+   R+N YVET+FGRR+   EINS     R   ERAAINAP+QG+AAD
Sbjct: 772 YPGVADYMQRTRKTARENRYVETVFGRRLWLSEINSSNGMRRQAAERAAINAPMQGTAAD 831

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI VH  L  H+L +K+++Q+HDELV EVPE EI T  + +   M         L
Sbjct: 832 IIKLAMIEVHDWLRRHELRSKLVMQVHDELVLEVPENEIETIKRELPLLMGNVA----QL 887

Query: 959 RVPLKVNIKVSNNWQE 974
           +VPL V + V  NW++
Sbjct: 888 QVPLLVEVGVGPNWEQ 903


>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
 gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
          Length = 960

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/996 (35%), Positives = 557/996 (55%), Gaps = 79/996 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 19  ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 73

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 74  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 133

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPEK+V 
Sbjct: 134 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVD 193

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L+N++  A  IK     EN+    +   
Sbjct: 194 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVG-ENLRNTLDWLP 252

Query: 242 LSRKLVMLRTDV---PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD    P     + L+    +  RL  F     F   + R AT        
Sbjct: 253 KGRELLTVKTDCDLSPDVSSFDALVDGGEDRARLADFFGRYGFKTWL-REATGES----- 306

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLERL 355
                  +  T + G A      R       Q++   +   Q S  + E  P ++     
Sbjct: 307 -------LPDTRSVGAA------RKAATPVKQYAPEAAAQQQASLFDVETPPAEV----- 348

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +     ++ W++ L+          T ++D   ++ + I++S   
Sbjct: 349 -----------QYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGISLSVQP 397

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKE-ILSYLKKFFENEHFLKIGHNIKY 471
            +          +I ++ H   D +G +    L++E +L+ ++ + E+E   K+G ++KY
Sbjct: 398 GR--------ACYIPVA-HRGPDVSGLDAAAQLSREAVLARMRLWLEDEIRSKVGQHLKY 448

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSS 527
           D  V   +GI++RG   D ML SYVL S R+ H + ++A++ L   + T +E+     + 
Sbjct: 449 DAHVFANHGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQ 507

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           I  D+++  +  E+A E++++ L+L   L PK+  + KL +VYE+++ P   V+ +ME  
Sbjct: 508 IGFDEVALDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERN 567

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ +D + L + SAE+   LL+LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT 
Sbjct: 568 GVLVDAERLARQSAELGHRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTA 627

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +G   T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A
Sbjct: 628 SGAPSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQA 686

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           + +TGRLAS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH++    
Sbjct: 687 TAVTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDG 746

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R 
Sbjct: 747 LMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRD 806

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            A  YI RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERA
Sbjct: 807 AAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERA 866

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEEIT 938
           AINAP+QG+AAD+ + +M++V   LE    A        +++++Q+HDELV EVP++E+ 
Sbjct: 867 AINAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELA 926

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              + +   M        +L VPL   + V +NW+E
Sbjct: 927 RVRERLPELMCGVA----SLSVPLVAEVGVGSNWEE 958


>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
 gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
          Length = 985

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 369/984 (37%), Positives = 546/984 (55%), Gaps = 74/984 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 60  NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQP----SHIAVV 114

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 115 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTL 174

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D   VI+K+GIPPE ++   A
Sbjct: 175 ACQASQSGQKVLISTGDKDMTQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLA 234

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L   +
Sbjct: 235 LMGDSSDNIPGVSGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGEKLLAEKD 294

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV +    + L L D N   LI +    EF + +  V          
Sbjct: 295 MADLSYALATIKTDVALEFSPQDLPLGDSNNDALIEYFGRYEFKRWLGEV---------- 344

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQ-KLFLERLQ 356
                  +N T +             T  T        Q+ KIN  Q TP  K     ++
Sbjct: 345 -------MNGTNS------------VTQPT--------QSVKINHYQATPAVKTDESAVE 377

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              ++ I+   Y  I+   D+  WV+KL      +    TD +D   +  + ++ +   +
Sbjct: 378 NSVKFKIDRSRYENILTETDLTHWVEKLSAEKLIAVDTETDGLDYMSANLVGVSFAL--E 435

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
             + ++        L +H       K       L+ LK   EN +  K+G N+K+D  + 
Sbjct: 436 NGEAAY--------LPLHLDYLGAPKTLEKSTALAALKPILENPNIGKVGQNLKFDMTIF 487

Query: 477 HRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
            R GI +RG E D ML+SY LDS GR  H++  +A+++L +     ++I    K+ +  +
Sbjct: 488 ARNGIELRGIEFDTMLLSYTLDSTGR--HNMDDLAKRYLGHQTIGFEDIAGKGKNQLTFN 545

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q  E+A E+++V ++L  +L  KL  +  L+ +Y+ ++ P++ V+S+ME  G+ I
Sbjct: 546 QIPLEQAGEYAAEDADVTMKLQQVLWEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLI 605

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D L   S EI++ L +LE   ++L+G+ FNL+S KQL +ILF KL  P   KT  G  
Sbjct: 606 DSDALFLQSNEITERLTALEMQAHELAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAP 665

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T T
Sbjct: 666 STNEEVLEEL-AYSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTAT 724

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+ + G++IR+AFI+    K+I+ADYSQIELRI+AH++    L   
Sbjct: 725 GRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDAGLINA 784

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+FG+ +E+V+ + RR+AK INF +IYG+S F L+ QL I R++A  
Sbjct: 785 FAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGISRADAQR 844

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+  ++   +   +  GYVET+FGRR++  EINS  +  R   ER AINA
Sbjct: 845 YMDLYFQRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAERVAINA 904

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI +RAMI + +   D      M++Q+HDELVFEV  E+I   S +I   ME 
Sbjct: 905 PMQGTAADIIKRAMIKLDEITRDDP-DIHMIMQVHDELVFEVRSEKIAFFSDLIKQHMEA 963

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L VPL V++ V  NW E
Sbjct: 964 AA----ELVVPLIVDVGVGENWDE 983


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
          Length = 930

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 363/985 (36%), Positives = 547/985 (55%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGA-GEPTGAMYGVLNMLRSLIMQYQP----SHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    QA G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVQAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LARRAEQAGRHVLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVFDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L++I  +  R+        K     +L   
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGIGGLQSIYGDIDRVATLSFRGAKTMGAKLLLNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS  L  ++TDV + +  + L ++  +   L +  +  EF + ++      D    
Sbjct: 241 EKADLSYLLATIKTDVDLALDCDDLAIKPLDSATLHTLFQRYEFKRWLS------DAQDG 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           +       + T   K  + E  +    T  T                             
Sbjct: 295 SWLTAAQGMKTKAVKPASEEANLSAVATAAT----------------------------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ + Y  I++   ++  + +L+ +G  +F   TD++D   +    + IS  D  
Sbjct: 326 -----LSREGYQTILDEAALEALIARLQHVGCFAFDTETDSLDVLSAN--LVGISCADAP 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  +  +I L+ H   D+  +  L +E +L+ L+   E+E   K+G N+KYD  V+
Sbjct: 379 G------QAYYIPLA-HDYLDAPAQ--LDREWVLARLQPLLEDEKVAKVGQNLKYDIGVM 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            R+GI +RG   D ML SYVL+S    HD+ S+A + L +   T +E+    K  +  ++
Sbjct: 430 ARHGIILRGVAFDTMLESYVLNSVAGRHDMDSLAARHLDHKTITFEEVAGKGKGQLTFNQ 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQID 591
           I   Q  E+A E+++V L+L   L P L  E    HV+  +D P++ V+S+ME TG+ ID
Sbjct: 490 IPLEQAAEYAAEDADVTLRLHQRLWPMLESEAGPRHVFCDIDMPLVPVLSRMERTGVLID 549

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L Q S E++  L +LE+  + L+ E FNLSS KQL  ILF K + P   KT  G   
Sbjct: 550 STILGQHSQELAVRLNALEQQAHTLADEPFNLSSTKQLQSILFDKQQLPILKKTPGGAPS 609

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++      + + IL++R L+K+KSTY D LP  ++  T RVHT Y  A T TG
Sbjct: 610 TNEEVLVELAEQGYELPQVILDYRTLAKLKSTYTDKLPQMVSPLTGRVHTSYHQAVTATG 669

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP+++D G++IR+AFI+P   K+++ADYSQIELRI+AH++    L + F
Sbjct: 670 RLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSKIVAADYSQIELRIMAHLSGDRGLLEAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAE+FG+ +E V+   RR AK INF +IYG+S F LA QL I R+EA  Y
Sbjct: 730 AAGKDIHRATAAEVFGLPLEAVTADQRRSAKAINFGLIYGMSAFGLARQLNIGRNEAQRY 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+  Y+E+T+    + GYVET+ GRR++  EIN+  +  R   ERAAINAP
Sbjct: 790 MDLYFERYPGVLAYMERTRQQASEQGYVETLDGRRLYLPEINARNAMRRKAAERAAINAP 849

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEVPE  +      +   ME +
Sbjct: 850 MQGTAADIIKRAMIAVDAWLQQSQPQVRMIMQVHDELVFEVPEALVDEVVSHVRTLMEGS 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV+I    NW + +
Sbjct: 910 ----LALAVPLKVDIGCGENWDQAH 930


>gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 913

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 358/986 (36%), Positives = 540/986 (54%), Gaps = 98/986 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 61  AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +   G  V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++   AL 
Sbjct: 121 SSAAAGRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENIL---INASRIKQKKRRENILE 235
           GD +DNIPG+PG+G KTA  LL          Y +L+ +    I  ++    K  EN   
Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L   +     LI+  + LEF   ++ +       
Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEA 296

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N E               I+ E+D D  +  + F +                      
Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                                   W++KLE     +F   T ++DA  ++ + ++ + + 
Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           + +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L ++    ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L++  L  +++LQ+HDELV EV E+ +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVREGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
             A      L VPL V   V +NW E
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911


>gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 933

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 369/984 (37%), Positives = 541/984 (54%), Gaps = 73/984 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQP----SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + + G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K G  V I + DKD+ QLV     L +T+    +D   VI+K+GIPPE ++   A
Sbjct: 122 ASQASKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  +I +      KK  E +L    
Sbjct: 182 LMGDSSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKIAELPIRGAKKLGEKLLAEKA 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV +      L + D N   LI +    EF + +  V          
Sbjct: 242 MADLSYALATIKTDVELAFSPHELTIGDSNNDALIEYFGRYEFKRWLGEV---------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQ-KLFLERLQ 356
                                ++   T+  S     ++Q  KIN  Q TP  K+    ++
Sbjct: 292 ---------------------MNGAGTVTQS-----AEQPVKINHYQATPAAKIDESAVE 325

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              ++ I+   Y  I+   D+ +W++KL      +    TD +D   +  + I+ +   +
Sbjct: 326 NAVKFHIDRSRYENILTEADLARWLEKLNAAKLIAVDTETDGLDYMSANLVGISFAL--E 383

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
             + ++        L +H       K       LS LK   EN +  KIG N+K+D  + 
Sbjct: 384 NGEAAY--------LPLHLDYLGAPKTLEKNTALSALKPILENPNIGKIGQNLKFDMTIF 435

Query: 477 HRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
            R GI ++G E D ML+SY LDS GR  H++  +A+++L +   + ++I    K+ +  +
Sbjct: 436 ARNGIDLQGIEFDTMLLSYTLDSTGR--HNMDDLAKRYLGHQTISFEDIAGKGKNQLTFN 493

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q  E+A E+++V ++L  +L  KL  +  L+ +Y+ ++ P++ V+S+ME  G+ I
Sbjct: 494 QIPLEQAGEYAAEDADVTMKLQQVLWEKLEPQPGLVALYQSIELPLLSVLSRMERCGVLI 553

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D L   S EI++ L +LE   Y L+G+ FNL+S KQL +ILF KL  P   KT  G  
Sbjct: 554 DSDALFLQSNEITERLTALEMQAYALAGQPFNLASTKQLQEILFGKLGLPVLQKTPKGAP 613

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T T
Sbjct: 614 STNEEVLEEL-AYSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTAT 672

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+ + G++IR+AFI+    K+I+ADYSQIELRI+AH++    L   
Sbjct: 673 GRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGLINA 732

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAEIFG+ +E+V+ + RR+AK INF +IYG+S F    +L I R++A  
Sbjct: 733 FAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFVFPARLGISRADAQR 792

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+P +  +I   +   +  GYVET+FGRR++  EINS  +  R   ER AINA
Sbjct: 793 YMDLYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGTERVAINA 852

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI +RAMI +     D      M++Q+HDELVFEV  E+I   S +I   ME 
Sbjct: 853 PMQGTAADIIKRAMIKLDGITRDDP-DIHMIMQVHDELVFEVRSEKIAFFSDLIKQHMEA 911

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L VPL V++ V  NW E
Sbjct: 912 AA----ELVVPLIVDVGVGENWDE 931


>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 923

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/980 (36%), Positives = 537/980 (54%), Gaps = 70/980 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+         + A + D
Sbjct: 4   LVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVID 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+ +  +YK +RP +P+ L  Q+  +R    A GI  + I G EADD+I T   
Sbjct: 58  APGKTFRDALDSEYKMHRPPMPDDLRMQVEPMRGIVHALGIDILCIDGVEADDVIGTLAL 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-HVIKKWGIPPEKMVCLQAL 185
            A  +G AVTI + DKD  QLV P   L +T+   ++D    VI K+G+ P++++   AL
Sbjct: 118 AAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLAL 177

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG+   G KTAA  L EYG+L+ ++ NA +IK K   +N+        L+R 
Sbjct: 178 MGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIG-DNLRVVLPRLLLNRA 236

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L+ ++TDV +    + L L + +   L  F +   FT+ +       + D  ++   V +
Sbjct: 237 LITIKTDVVLEKRPQDLALRERDTEALRDFYQRYGFTQALK------ELDGGSVAVTVAE 290

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 +        D    ++ +   S S +                            
Sbjct: 291 QEPGRGRNAGFHVAPDASVAMEINPALSASGE---------------------------- 322

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  I   + +Q W+ +L   G  +    TD++D   +  I +           SF  E
Sbjct: 323 --YETIFTIEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGL-----------SFASE 369

Query: 426 TIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +     +    D  G          L+ L+   E+    K+G + KYD  VL RYGI +
Sbjct: 370 -VGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVL 428

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRK--EILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL SG + HD+ ++A++ L Y T K  +++      IP   +   +  
Sbjct: 429 AGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEAT 488

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A E++++ L+L  +L PKL+ E +L  VY  ++ P++ V+ ++E  G+QID + L + 
Sbjct: 489 QYAAEDADITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQ 548

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++S+ ++  ++   DL+G  FNL SPKQL  +LF +LK P   KT  GQ  T  + LE
Sbjct: 549 SADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALE 608

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            I    + + + ILE+R L+K+++TY + LP  I+  T RVHT Y  A   TGRL+S +P
Sbjct: 609 AI-VDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDP 667

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+TD G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+ +D+H
Sbjct: 668 NLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVH 727

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             +AAE+FG  I++V+P  RR AK INF +IYG+S F LA QL I R EA DYI  YF R
Sbjct: 728 CAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDR 787

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+ +++E T+   R  GYVET+FGRR++ + I S   + R   ERAAINAP+QG+AAD
Sbjct: 788 FAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAAD 847

Query: 899 ITRRAMISVHK--SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           I +RAM++V     +  H+    M+LQ+HDELVFE  E  + T    +VH +        
Sbjct: 848 IIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT----LVHEVSARMAAAA 903

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL V++ V ++W E +
Sbjct: 904 QLRVPLVVDVGVGHHWDEAH 923


>gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
 gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
          Length = 913

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 358/986 (36%), Positives = 540/986 (54%), Gaps = 98/986 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 61  AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENI---LINASRIKQKKRRENILE 235
           GD +DNIPG+PG+G KTA  LL          Y +L+ +    I  ++    K  EN   
Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L  ++     LI+  + LEF   ++ +       
Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPDEPQREALIALYRELEFKNWLDDLLREAKEA 296

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N E               I+ E+D D  +  + F +                      
Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                                   W++KLE     +F   T ++DA  ++ + ++ + + 
Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           + +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L ++    ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L++  L  +++LQ+HDELV EV EE +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVEQVCEGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
             A      L VPL V   V +NW E
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 348/983 (35%), Positives = 540/983 (54%), Gaps = 79/983 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRA++A P  +   DG P  AI G  NML  +L+    E    H AV
Sbjct: 6   ENPLILIDGSSYLYRAYHAAPNFTNS-DGEPTGAIYGVVNMLRSMLRQFSTE----HIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRSQIEPLHAVIKAMGLPLIAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  A ++G  V I + DKD+ QLV     L +T+ +  +D   V+ K+GI PE ++   
Sbjct: 121 LSTQASQQGMPVLISTGDKDMAQLVDQNVTLINTMTDVVMDPAGVVDKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDALYDNLDDIAALGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +S KL  ++ DV + +  + L     +   L      L+F + +  +         
Sbjct: 241 EAAYMSYKLATIKLDVELDVTPDELRKGVPDTDALTELFGKLQFRRWLTEM--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   ++ ++ + +A E   D  T  K    +                         
Sbjct: 292 --------LDGSDGRIVADEKSGDVPTEKKAVAPT------------------------- 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  +++ +    W+++L+   + +F   TD +D   +  + ++ + +++ 
Sbjct: 319 -----IDRSGYETVLDKESFATWLEQLKAAKAFAFDTETDGLDYMTANVVGVSFA-IEEG 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E+    KIG N+K+D  ++ 
Sbjct: 373 KAAYVPVAHDYLDAPAQLDRDW---------VLEQLKPLLEDPKQAKIGQNLKFDASIVA 423

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L +   + +E+    K  +  ++I
Sbjct: 424 RYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI 483

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ L+L   L PK+  + KL HV+E ++ P++ V+S+ME TG+ +D 
Sbjct: 484 DLEQAGPYAAEDADITLRLHNTLYPKVEADDKLNHVFETIEMPLVPVLSRMERTGVYVDS 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  +E+  ++++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 544 MLLGAQSTEIAARLDEIEKKAFEIAEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K +LE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 604 NEEVLQELAL-DYPLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++    K+++ DYSQIELRI+AH++    L   F 
Sbjct: 663 LSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFR 722

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI  ++IE+VS + RR AK INF +IYG+S F LA QL + R+EA +Y+
Sbjct: 723 HGKDIHAATAAEILSLDIEEVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYM 782

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+N   + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 783 NVYFERYPGVLEYMESTRNAASEQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI + AMI+V   ++       ++L+Q+HDELVFEV E  +   +  +   ME+A
Sbjct: 843 QGTAADIIKLAMIAVDGWVQQQPEGNVRLLMQVHDELVFEVKESALEAVTASVKALMEQA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW +
Sbjct: 903 A----TLDVPLIADTGYGDNWDQ 921


>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
          Length = 928

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 361/983 (36%), Positives = 546/983 (55%), Gaps = 74/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    E IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             + A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAHQASQKGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    E L+  + N   L+     L F   +N +    +  + 
Sbjct: 241 ENAMLSYELATIKLDVELEETPESLLKAEPNKDELVKLYGQLTFKSWLNEL---LEGGSG 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E V L                            + S Q S  ++E     + ++R Q 
Sbjct: 298 SVEAVEL----------------------------AGSAQASASHAEMETSAVTIDRSQ- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++ +    W+ KL+T    +F   TD +D   +  + ++ + +D+ 
Sbjct: 329 ----------YETILDEETFNAWLDKLQTAELFAFDTETDNLDYMLANLVGLSFA-VDEG 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E+    K+G N+KYD  VL 
Sbjct: 378 IAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDAAKAKVGQNLKYDASVLA 428

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RY I ++G + D ML SY+ +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 429 RYDIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +   E L  VYE ++ P++ V+S++E TG+ ID+
Sbjct: 489 ELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDE 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 549 MKLSAQSVEITARLDELEKKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 609 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 668 LSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFR 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI G++IE+VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 728 DGKDIHAATAAEIMGLDIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 788 DKYFERYPGVMQYMEDTRSTAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 848 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L+VPL       +NW +
Sbjct: 908 A----ELKVPLVAEAGHGDNWDQ 926


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 371/1001 (37%), Positives = 556/1001 (55%), Gaps = 81/1001 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAANDGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V      + A
Sbjct: 241 DAADLSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV      T+N    I    +   T+   Q          + +EQT  K+ ++R   
Sbjct: 296 N--PV------TQNSAEKIPN--NYQATVSAPQ---------AVETEQTFAKVEIDR--- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413
                     Y  +     +Q W++K+  +   +    TD +D+  +  + I+       
Sbjct: 334 --------SRYETVTTMAQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGISFGLANGE 385

Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLT-KEILSYLKKFFENEH 461
                L  K+  + + +    DL    ++  T       KN L     L  LK   E+  
Sbjct: 386 ACYIPLTHKEQVTLEPQQS--DLFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESAD 443

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR-- 517
             KIG NIKYD  +   +G+ + G   D ML SY L+S GR  H++  +A ++L +    
Sbjct: 444 VKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIE 501

Query: 518 -KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLD 573
            +EI    K+ +  DKI+     ++A E+++V ++L  +L P+L  EK   L+ ++  ++
Sbjct: 502 FEEIAGKGKNQLTFDKIAIDIASQYAAEDADVTMKLHQVLSPEL--EKAPTLVKLFNEIE 559

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+++V+S++E  G+ ID + L   S EI + L  LE+ ++  +GE FNL+S KQL +IL
Sbjct: 560 MPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAGEVFNLASTKQLQEIL 619

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           FTKL  P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN
Sbjct: 620 FTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMIN 679

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
           ++T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQI
Sbjct: 680 QKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 739

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S
Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMS 799

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F L+ QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI 
Sbjct: 800 EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIK 859

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S  +  R   ER AINAP+QG+AADI + AMI + K++       KM++Q+HDELVFEV 
Sbjct: 860 SSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDD-NIKMIMQVHDELVFEVK 918

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EE I   SQ+I   MEKA    I L+VPL   + V +NW E
Sbjct: 919 EELIEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955


>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
 gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
          Length = 937

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 367/987 (37%), Positives = 541/987 (54%), Gaps = 69/987 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M  +  L LVDGSS++YRAF+A P L R   G P      AI G  NM+  L    R+E 
Sbjct: 1   MTDKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPKSPATGAIRGMINMMTAL----RREV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A + A IFD P  TFR++ YP+YKANR  +P+ L  Q+  +    +  G P + +   E
Sbjct: 56  RADYAACIFDAPGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVLTVPDVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T   IA  +G  V + S DKDL QLV     + DT+  +K D+  V  ++G+PP
Sbjct: 116 ADDVIGTLAKIAAAQGVEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             MV  Q L GDS+DN+PG+  +G KTAA  L EYG+L+ ++  A+ +K     EN+ + 
Sbjct: 176 NLMVDYQTLVGDSVDNVPGVEKVGPKTAAKWLLEYGSLDALVERAAEVKGAAG-ENLRKA 234

Query: 237 AETARLSRKLVMLRTDVPI-----TIP-LEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            +   LSRKLV +RTD  +      +P LE L +       L  F +   F  L+  +  
Sbjct: 235 LDKLPLSRKLVTIRTDCDLEGHVTGLPSLEGLPVGAPQTSELKPFYEKFGFKSLVKTL-- 292

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
               +A  + P +            IE  I +      +    L D+ S +++       
Sbjct: 293 ----EAQEVPPEL------------IEENIKKKAAKANTDQGGLFDEPSDLSALD----- 331

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                   +  P +N  Y  I   +    W+ KLE    A+    T ++D   ++ + ++
Sbjct: 332 --------AAAPASNLKYDTITTWEQFDGWLAKLEAAELAAIDTETTSLDEMVAQIVGVS 383

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S            E  +I L+ H   D+  +  +  E+L+ LK + EN    K+G +IK
Sbjct: 384 FSVEPG--------EAAYIPLT-HNYPDAPAQLPI-DEVLAKLKPWLENPEKKKLGQHIK 433

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
           YD+ V   +GI + G+  D ML SYVL+  +  H +AS+A++ L  +    +++      
Sbjct: 434 YDRHVFANHGIEVEGYAHDTMLQSYVLEVHKP-HGLASLAERHLGRSGISYEDLCGKGAH 492

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            I   ++  ++  E++ E+S+  L +   L P+L   EKL  VY+ L+    + + ++E 
Sbjct: 493 QISFSQVDIAKAAEYSCEDSDQTLDVHRTLWPQLEANEKLRFVYQ-LEMDSSEALYRVER 551

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G+ ID   L   S E+   +++LE+  Y+++G+ FNL SPKQ+G+I FTKL  P   KT
Sbjct: 552 NGVMIDSATLAAQSHELGTRIMALEQEAYEIAGQPFNLGSPKQIGEIFFTKLGLPVVKKT 611

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            +G   T  + LE++   D P+   ILE R LSK+K TY D L    N RT RVHT Y+ 
Sbjct: 612 PSGAPSTDEEVLEKL-AEDYPLPAKILEHRGLSKLKGTYTDKLGQLANPRTGRVHTHYAQ 670

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G+++R AF++P    + SADYSQIELRI+AHI+   
Sbjct: 671 AVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDE 730

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F   +D+HR  AAE+FG   ++VS + RR+AK INF +IYG+S F LA  L I  
Sbjct: 731 SLLRAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIET 790

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             AA YI+RYF R+PG+  Y+++TK   ++ GYVET+FGRR++  EINSP    R   ER
Sbjct: 791 KAAASYIERYFARYPGVKAYMDETKALAKEQGYVETVFGRRLYLPEINSPNGPRRGGAER 850

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QG+AAD+ + +M+ V   L++ K ATKM++Q+HDELVFEVPE E+      I 
Sbjct: 851 AAINAPMQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDELVFEVPEAEVEWVRAEIP 910

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             M         L+VPL   I +  NW
Sbjct: 911 RLMAGVAA----LKVPLLAEIGIGPNW 933


>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
 gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
          Length = 922

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 359/983 (36%), Positives = 536/983 (54%), Gaps = 80/983 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P  +   +G P  A+ G  NML  LL+    E    H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAAPNFTNS-EGEPTGAVYGVVNMLRSLLRQFSTE----HIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR++IYP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+ +  +    V++K+GI PE ++   
Sbjct: 121 LATQASKAGMPVLISTGDKDMAQLVDENVTLINTMTDVVMGPAGVVEKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ I  N   I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGVGGLDAIYDNLDAIPALGFRGSKTMPKKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +S +L  ++ DV +      L+  + +   L S    L+F + ++ +         
Sbjct: 241 EAAYMSYELATIKLDVELDSAPHELLKTEPDTDELTSLFGKLQFRRWLSEM--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   ++ ++ K +A E                         SE T +K+       
Sbjct: 292 --------LDGSDGKIVADEKA-----------------------SEPTEKKVVAPT--- 317

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I++      W+  L      +F   TD +D   +  + ++ + +++ 
Sbjct: 318 -----IDRSGYETILDEASFNSWLATLTAADVVAFDTETDGLDYMTANLVGVSFA-VEEG 371

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+    K+G N+K+D  +L 
Sbjct: 372 KAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPLLEDPAQNKVGQNLKFDMSILA 422

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RY I+M+G + D ML SYV +S    HD+ S+A ++L +   + +E+    K  +  ++I
Sbjct: 423 RYDINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L  LL  K+   E+L  V+E ++ P++ V+S++E TG+ ID 
Sbjct: 483 DLDVAGPYAAEDADITLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDS 542

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE   Y+++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 543 MLLSAQSTEIAARLDELETKAYEIAEQEFNLSSPKQLQAILFEKMGLPILKKTPSGAPST 602

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K +LE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 603 NEEVLQELAL-DYPLPKILLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++   G++IR+AFI+P   K+++ DYSQIELRI+AH++    L + F+
Sbjct: 662 LSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFK 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G+ IE V+ + RR AK INF +IYG+S F LA QL + R+EA DY+
Sbjct: 722 QGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLGMGRNEAQDYM 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+    + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 782 NVYFERYPGVLEYMESTRVHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAINAPM 841

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAM+ V + +E  +    ++L+Q+HDELVFEV E E+   S  +   ME A
Sbjct: 842 QGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQESELDAVSADVRRLMELA 901

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    NNW E
Sbjct: 902 A----ELDVPLIADAGAGNNWDE 920


>gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1]
          Length = 913

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 358/986 (36%), Positives = 539/986 (54%), Gaps = 98/986 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 61  AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +   G  V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++   AL 
Sbjct: 121 SSAAAGRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENIL---INASRIKQKKRRENILE 235
           GD +DNIPG+PG+G KTA  LL          Y +L+ +    I  ++    K  EN   
Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L   +     LI+  + LEF   ++ +       
Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEA 296

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N E               I+ E+D D  +  + F +                      
Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                                   W++KLE     +F   T ++DA  ++ + ++ + + 
Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           + +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L ++    ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L +  L  +++LQ+HDELV EV E+ +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLLESGLDARVILQVHDELVLEVREDLVEQVREGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
             A      L VPL V   V +NW E
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911


>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
 gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
          Length = 933

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 359/983 (36%), Positives = 539/983 (54%), Gaps = 69/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    + IA    V
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G++E +  N   I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A +S +L  ++ DV +    E L+    N   LI     L F   +N +         
Sbjct: 241 ANADMSYELATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNELL-------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         +G +   E D  ++   +     S  T ++N+              
Sbjct: 293 --------------EGGSGVVEADEKSSAAGAGSVRSSASTVEMNT-------------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+  +Y  I++      W++KL+     +F   TD++D   +  + ++ +T ++ 
Sbjct: 325 -SAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAT-EEG 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 383 VAAYVPVAHDYLDAPQQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDMSVLA 433

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RYGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 434 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +Y  ++ P+I V+S++E TG+ ID 
Sbjct: 494 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYGEIEVPLIPVMSRIERTGVFIDD 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 554 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 614 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++    K+++ DYSQIELRI+AH++    L + F+
Sbjct: 673 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 733 QGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + G+VETI+GRR+H  EI S     R   ERAAINAP+
Sbjct: 793 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 853 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESALAEIESKVQELMESA 912

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL       +NW +
Sbjct: 913 A----ELEVPLVAEAGHGDNWDQ 931


>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
 gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
          Length = 921

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 356/971 (36%), Positives = 542/971 (55%), Gaps = 66/971 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVIFD P
Sbjct: 6   LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGASSAIQKLMRRTQP----THMAVIFDTP 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T T  A
Sbjct: 61  EPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKALGIPLYSLPGAEADDIIGTLTKRA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
             EG  V I + DKD+ QLV+P   L D+ KE  +D   V++K+G+ P +++    L GD
Sbjct: 121 LSEGHHVLISTGDKDMAQLVNPHVKLEDSFKERVLDEAGVLEKFGVHPHQIIDYLTLMGD 180

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + D I G+PG+G KTAA LL EYG+L+NI+ N  ++K  K  +NI +  +  ++  +L  
Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSLDNIIANVDQLK-GKISQNIKDNLDNIKIDHQLAS 239

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
           +  D+ + +    L L + N  +L      LEF   +  +    + +    +     I  
Sbjct: 240 IVCDLDLALDWHDLKLSNPNINQLRDLYTELEFRNQLQSLDHPNNPNTPAYQQTSQSIVK 299

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
           +E K    E  I  D    +SQ   L D T      Q      L+R+Q+   + I+ +  
Sbjct: 300 SEQK---TEQVIAEDHANLSSQDDQLGDATYHTVLTQADWATLLQRMQQADHFAIDTE-- 354

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
                T ++   + +L       F +  D  DA++  P+A                    
Sbjct: 355 -----TTNLDYRIAEL-----VGFSVAFDAHDAYYV-PVA-------------------- 383

Query: 429 IDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                    D  G    L +E +L  +K   ENE   KIGH++KYD  +   +GI+++G 
Sbjct: 384 --------HDYEGAPEQLNREHVLEQIKPILENEQVKKIGHHLKYDAHIFANHGITIQGW 435

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 436 YFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKSFNQIELEVAAHYA 495

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L+++   ++ P+  V++ ME  GI++D   L Q+S E
Sbjct: 496 AEDAHVTYRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVE 555

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            S+ + +LE    +L+GE FN++SPKQ+G++LF +L    G KT TGQ+ T+   LE+I 
Sbjct: 556 FSETMQTLENQATELAGEAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKI- 614

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+K+TY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 615 --EHPLAEVILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSYHQALTATGRLSSTDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T +G++IRRAFI+P  + L++ADYSQIELR++AH ++   L   F+   D+HR  
Sbjct: 673 NIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQQGQDVHRRT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G++IE V+   RR AK +NF ++YG+S F L  QL   R E+  YI RYF R+PG
Sbjct: 733 AAEVLGIDIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESRSYIARYFQRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + +Y+E+T+   R+ G+VETI GRR++  +I +    I+   ERAAINAP+QGSAADI +
Sbjct: 793 VLDYMERTRQIAREQGFVETILGRRLYTPDILANNKMIKQAAERAAINAPLQGSAADIIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V K L   K   K+LLQ+HDELVFE  E      S+ I   M+      +++ VP
Sbjct: 853 LAMIAVDKILP--KDQAKLLLQVHDELVFEADETIADELSKQIAEVMQSV----LDISVP 906

Query: 962 LKVNIKVSNNW 972
             V +    NW
Sbjct: 907 FVVEVGQGQNW 917


>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
 gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
          Length = 894

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 365/975 (37%), Positives = 548/975 (56%), Gaps = 99/975 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS+ +RAF+A P L+    G P  AI G  NM+ +L+++ + E +A    V+FD
Sbjct: 6   LILVDGSSYFFRAFHALPPLTNS-KGQPTGAIYGVVNMIKRLIKDYQPEELA----VVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+E YP+YKA+RP +P+ L  Q  PL+ L  +A GIP + I+G EADD+I T  
Sbjct: 61  AKGKTFRDEWYPEYKAHRPPMPQELSSQFTPLIEL-LEAMGIPILIIEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A ++G +V I + DKD+ QLV+    L +T+    +DIE V +K+GI P +++    L
Sbjct: 120 TQATEQGVSVVISTGDKDMAQLVNEHISLINTMNNSAMDIEGVKEKFGIMPSQVIDYLTL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAETARL 242
            GDS+DN+PG+   G KTA   L EY +L+N++ NA++I  K     RE+I +      L
Sbjct: 180 IGDSVDNVPGVTKCGPKTAIKWLTEYQSLDNLIRNANQIGGKIGDYLRESIPQLP----L 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV ++TDV + +    L  +  N  RLI+ ++ LEF   +  +              
Sbjct: 236 SKKLVTIKTDVSLPLRWGELQPKTMNKERLIALIRDLEFKNWLKEL-------------- 281

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                          LS++ S  N+E+              Q P
Sbjct: 282 -------------------------------LSEEESYDNNEK--------------QVP 296

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +   S+  I   + +  W+ +LE   +      T ++D   ++ + I+++  + K     
Sbjct: 297 V---SFELITTNQQLSHWLNQLEKCEAFCIDTETTSLDVMMAEIVGISLAIEEGK----- 348

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                +I L+     D      L +E+L+ L    EN    KIG N+KYD  VL  +GI+
Sbjct: 349 ---AAYIPLT----HDDGSPQLLREEVLTALNPILENPTIKKIGQNLKYDYSVLRNHGIT 401

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           ++G + D ML SYVL+SG   HD+ S+A K+L +   + +EI       +  D+I   + 
Sbjct: 402 LKGIYYDTMLESYVLNSGSGRHDMDSLALKYLGHKTISYEEIAGKGAKQLRFDQIPVEKA 461

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A E++++ LQL   L P LI E + HV+  ++ P++ V++ ME  G+ ID   LKQ 
Sbjct: 462 GAYAAEDADITLQLHHKLYP-LIPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLKQH 520

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
              + + + +LEE    L+G+ FNL+SPKQL +ILF   K P  AKT TGQ  +TA+ + 
Sbjct: 521 GERLKERIRTLEEEALHLAGKPFNLNSPKQLQEILFDSHKLPIIAKTPTGQ-PSTAEAVL 579

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D  +   ILE+R L+K+ STY D+LP  IN +T RVHT Y+ A T TGRL+S EP
Sbjct: 580 QELAYDYRLAAVILEYRSLTKLVSTYIDALPKKINPKTNRVHTSYNQAVTATGRLSSSEP 639

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  D+H
Sbjct: 640 NLQNIPIRSEEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDENLLKAFANGWDVH 699

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+EIF + +E+++ + RR AK INF +IYG+S F LA Q+ + R +A  YI  YF R
Sbjct: 700 AATASEIFQIPLEEINNEQRRRAKAINFGLIYGMSSFGLAKQIGVERQDAQYYIDTYFQR 759

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY+ +T+      GYVET+FGRR++  EIN+     +   ER AINAP+QG+AAD
Sbjct: 760 YPKVLEYMNRTRQQAHHQGYVETLFGRRLYLPEINARNLMRQKAAERTAINAPMQGTAAD 819

Query: 899 ITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I + AMI + K    H K   +M++Q+HDELVFEV +  I ++ ++I   ME      + 
Sbjct: 820 IIKNAMICIAKWQNSHEKPPARMIMQVHDELVFEVNKNAIESSKEMIRELMEHT----VT 875

Query: 958 LRVPLKVNIKVSNNW 972
           L VPL V+I    NW
Sbjct: 876 LSVPLVVSIGTGANW 890


>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
 gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
          Length = 906

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 352/956 (36%), Positives = 537/956 (56%), Gaps = 71/956 (7%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +P NAI G  NM+  ++    ++  +   AVIFD    TFR+E+Y  YKA+RP +P+ L 
Sbjct: 6   IPTNAIYGVVNMIRSMM----RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV    
Sbjct: 62  CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            L +T+    +D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G
Sbjct: 122 TLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181

Query: 213 NLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            LE +  N  +I        K   + + E  + A+LS +L  ++ DV +    + L+ + 
Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQT 241

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +   L+S    L F   +  +               LD  T    G+     +  D   
Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GV-----VTADEQT 277

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           KTS   S++  T+  ++   P+              I+   Y  I+N +D Q W++KL+ 
Sbjct: 278 KTS---SVTVSTAASHAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQ 325

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   TD +D   +  + ++ + + + +     V   ++D      +D        
Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLDRDW------- 377

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505
             +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+
Sbjct: 378 --VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435

Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P  ++
Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALQEAAQYAAEDADVTLRLHQRIHP--LI 493

Query: 563 E---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           E   KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+  Y+L+G+
Sbjct: 494 EQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGQ 553

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNLSSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K
Sbjct: 554 PFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAK 612

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++
Sbjct: 613 LKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVA 672

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           P   K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR
Sbjct: 673 PHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRR 732

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYV
Sbjct: 733 RAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYV 792

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLAT 918
           ETIFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E +     
Sbjct: 793 ETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRV 852

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K+L+Q+HDELVFEV E  ++     +   ME A      L VPL        NW +
Sbjct: 853 KLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGGNWDQ 904


>gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088]
 gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088]
          Length = 908

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 358/987 (36%), Positives = 542/987 (54%), Gaps = 94/987 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQ    L LVDGSS++YRAF+A P L+    G P  AI G  +ML +L Q+     I   
Sbjct: 1   MQNLAPLVLVDGSSYLYRAFHALPPLTTTK-GQPTGAIKGVVSMLKRLHQDYASSPIV-- 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD    TFR+E++PDYKA RP +P+ L  Q+  +    +A G P I   G EADD+
Sbjct: 58  --VVFDAKGPTFRDEMFPDYKAQRPPMPDELRTQIEPLHAIVKALGYPLICEPGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A ++G  V + + DKD+ QLV     L +T+ + ++D   V++K+G  P+KM+
Sbjct: 116 IGTLAKQASEQGMDVIVSTGDKDMAQLVDQHVTLVNTMSDTRLDPAGVMEKYGFGPDKMI 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-----IKQKKRRENILE 235
              AL GD +DNIPG+ G+G KTA  L+Q  G L++I  N  R     I+  K     LE
Sbjct: 176 DYLALMGDKVDNIPGVAGVGEKTALGLIQGLGGLDDIYANLDRVADLPIRGAKSLAAKLE 235

Query: 236 YA-ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              + A +S  L  ++ DV +      L  +  +   L  + + LEF   +         
Sbjct: 236 AERDAAYMSYTLATIKLDVELAFAPADLRNDQPDTAALSHWYQELEFRSWL--------- 286

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                   EID   T+  ++ + ++   ++ +   T Q L    
Sbjct: 287 -----------------------AEIDASATVTRAEPAPIAPAQTQYDCVTTEQAL---- 319

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                                   QW+  L+  G+ +F   T+++D   ++ + +     
Sbjct: 320 -----------------------AQWISVLKEAGTFAFDTETNSLDYMEAELVGL----- 351

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYD 472
                 SF  E   +   V  + D  G  + L+++ +L+ LK   E+  + K+G ++KYD
Sbjct: 352 ------SFCAEP-GVACYVPVAHDYPGAPDQLSRDYVLNQLKDLLEDPQYQKVGQHLKYD 404

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSI 528
             VL  YGI++RGF  D ML SYVLDS    HD+ S+A+++L   + + +++       +
Sbjct: 405 MHVLANYGIALRGFAGDTMLESYVLDSVGGRHDMDSLAERYLGRRTISFEDVAGKGAKQL 464

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITG 587
             +++S  Q   +A E++++  QL+  L  +L   + LH VY  ++ P+  V+  +E  G
Sbjct: 465 TFNQVSLEQAVPYACEDADITWQLYEYLTNQLTATESLHTVYTDIELPLAPVLQSIERNG 524

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             + +++L+Q S+ I   L+ LE   +DL+G  FNL S KQLG+ILF +LK P   KT  
Sbjct: 525 ALVSREILQQQSSVIGARLIELEAEAHDLAGRPFNLGSTKQLGEILFDELKLPIIKKTPK 584

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + L ++   D P+ K +LE+R L+K+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 585 GAPSTGEEVLVELAL-DYPLPKVLLEYRGLAKLKSTYTDKLPTLINPRTGRIHTSYHQAV 643

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIPI++  G+ IR+AFI+P    +++ADYSQIELRI+AH++    L
Sbjct: 644 TATGRLSSSDPNLQNIPIRSVEGRAIRKAFIAPENHVIVAADYSQIELRIMAHLSGDAGL 703

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F   LD+H   AAE+FGV +++V+   RR AK INF +IYG+S F LA QL I R+E
Sbjct: 704 LTAFNEGLDVHAATAAEVFGVALDEVTSDQRRSAKAINFGLIYGMSAFGLAKQLHIGRAE 763

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           +  YI  YF R+PG+ +Y+++T+    + GYVETIFGRR++  EIN+         ER A
Sbjct: 764 SQAYIDTYFQRYPGVLDYMDRTRQGAHERGYVETIFGRRLYLPEINARNKMRVQAAERTA 823

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QGSAADI ++AM++V + L D  L +KM++Q+HDELVFEVP+ E+      ++ +
Sbjct: 824 INAPMQGSAADIIKKAMLAVDRFLRDSSLESKMIMQVHDELVFEVPKHELDALRAGVITA 883

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A      L VPL V + + +NW+E
Sbjct: 884 MESAA----QLAVPLLVEVGLGDNWEE 906


>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 921

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 356/971 (36%), Positives = 542/971 (55%), Gaps = 66/971 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVIFD P
Sbjct: 6   LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGASSAIQKLMRRTQP----THMAVIFDTP 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T T  A
Sbjct: 61  EPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKALGIPLYSLPGAEADDIIGTLTKRA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
             EG  V I + DKD+ QLV+P   L D+ KE  +D   V++K+G+ P +++    L GD
Sbjct: 121 LSEGHHVLISTGDKDMAQLVNPHVKLEDSFKERVLDEAGVLEKFGVHPHQIIDYLTLMGD 180

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + D I G+PG+G KTAA LL EYG+L+NI+ N  ++K  K  +NI +  +  ++  +L  
Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSLDNIIANVDQLK-GKISQNIKDNLDNIKIDHQLAS 239

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
           +  D+ + +    L L + N  +L      LEF   +  +    + +    +     I  
Sbjct: 240 IVCDLDLALDWHDLKLSNPNINQLRDLYTELEFRNQLQSLDHPNNPNTPAYQQTSQSIVK 299

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
           +E K    E  I  D    +SQ   L D T      Q      L+R+Q+   + I+ +  
Sbjct: 300 SEQK---TEQVIAEDHANLSSQDDQLGDATYHTVLTQVDWATLLQRMQQADHFAIDTE-- 354

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
                T ++   + +L       F +  D  DA++  P+A                    
Sbjct: 355 -----TTNLDYRIAEL-----VGFSVAFDAHDAYYV-PVA-------------------- 383

Query: 429 IDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                    D  G    L +E +L  +K   ENE   KIGH++KYD  +   +GI+++G 
Sbjct: 384 --------HDYEGAPEQLNREHVLEQIKPILENEQVKKIGHHLKYDAHIFANHGITIQGW 435

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 436 YFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYA 495

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L+++   ++ P+  V++ ME  GI++D   L Q+S E
Sbjct: 496 AEDAHVTYRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVE 555

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            S+ + +LE    +L+GE FN++SPKQ+G++LF +L    G KT TGQ+ T+   LE+I 
Sbjct: 556 FSETMQTLENQATELAGEAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKI- 614

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+K+TY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 615 --EHPLAEVILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSYHQALTATGRLSSTDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T +G++IRRAFI+P  + L++ADYSQIELR++AH ++   L   F+   D+HR  
Sbjct: 673 NIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQQGQDVHRRT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G++IE V+   RR AK +NF ++YG+S F L  QL   R E+  YI RYF R+PG
Sbjct: 733 AAEVLGIDIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESRSYIARYFQRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + +Y+E+T+   R+ G+VETI GRR++  +I +    I+   ERAAINAP+QGSAADI +
Sbjct: 793 VLDYMERTRQIAREQGFVETILGRRLYTPDILANNKMIKQAAERAAINAPLQGSAADIIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V K L   K   K+LLQ+HDELVFE  E      S+ I   M+      +++ VP
Sbjct: 853 LAMIAVDKILP--KDQAKLLLQVHDELVFEADETITDELSKQIAEVMQSV----LDISVP 906

Query: 962 LKVNIKVSNNW 972
             V +    NW
Sbjct: 907 FVVEVGQGQNW 917


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 918

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 366/991 (36%), Positives = 535/991 (53%), Gaps = 92/991 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N L LVDGSS++YRAF+A+     R   GLP  A+    NM+  L    RK+    
Sbjct: 1   MAPSNPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSL----RKQYPDC 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD    TFR++IYP+YKA R  +P+ L  Q+  +    +A G P + ++G EADD
Sbjct: 57  HVAVVFDAKGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T    A ++   V I + DKD+ QLVS    L DT+K+ K D E VI+K+G+PPE +
Sbjct: 117 VIGTLARQATEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENI 233
           +   AL GD +DNIPG+ G+G KTA  LLQ  G+++ I  N  ++        K   +  
Sbjct: 177 IDYLALMGDKVDNIPGMTGVGEKTALALLQGIGSIDEIAANLDKVAALGFRGSKAFADKF 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E  E  RLS  L  ++TDV +   LE L L   +   L++  +  E   LI        
Sbjct: 237 REQEEQVRLSYVLATIKTDVELEQSLEELQLGPIDKESLLAVYREYELRNLIKE------ 290

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                     L+    E+ G                Q  +  D  + + + +T       
Sbjct: 291 ----------LESGGEESAG----------------QEEAGDDSAAPVAAIET------- 317

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  I++  +   W+++L+     +F   T ++D   ++ + +    
Sbjct: 318 -------------DYRCILDEAEFDGWLEQLKVAPLFAFDTETTSLDYMEARIVGV---- 360

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKY 471
                  SF VE       V    D  G      E  +L  LK   E+   LK+G N+KY
Sbjct: 361 -------SFAVEA-GKAAYVPFGHDYLGAPVQLTEAVVLGKLKPLLEDPTRLKVGQNLKY 412

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
           D+ VL  + I ++G   D ML SYVL+S  S HD+ S+A+++L     + ++I       
Sbjct: 413 DRNVLLNHDIDLQGIAYDTMLESYVLNSTASRHDMDSLAKRYLGVETTSFEDIAGKGVKQ 472

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEIT 586
           +  ++I   Q   +A E++++ L+L   L  +L  V  L  V+  ++ P++ V+++ME+ 
Sbjct: 473 LTFNQIELEQAAPYAAEDADITLRLHQTLWGQLEAVPGLCQVFSEIELPLLPVLARMELL 532

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G  ID  LL Q S EI   L  LE   ++L+G++FNLSSPKQLG+ILFTKL  P   KT 
Sbjct: 533 GTTIDPKLLHQQSQEIELRLAELERQAHELAGQEFNLSSPKQLGEILFTKLGLPIIKKTP 592

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G   T  + L ++      + + ++E R L+K+KSTY D LP  I  +T RVHT Y  A
Sbjct: 593 KGAPSTAEEVLAEL-AETYELPRLLMEHRTLAKLKSTYTDKLPLMIKPQTGRVHTSYHQA 651

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRL+S +PNLQNIP++ + G++IR+AFI     KL++ADYSQIELRI+AH++    
Sbjct: 652 VAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKG 711

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F    DIH+  AAE+FGV ++ V+  MRR AK INF +IYG+S F LA QL I R+
Sbjct: 712 LLTAFAEGKDIHKATAAEVFGVALDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRA 771

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  Y+  YF R+PG+ EY+E+T+      GYVET+FGRR++  +I S  + +R   ERA
Sbjct: 772 EAQKYMDLYFERYPGVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNAGLRKGAERA 831

Query: 887 AINAPIQGSAADITRRAMISVH---KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           AINAP+QG+AADI +RAMI+V    + +ED  +  +ML+Q+HDELVFE+ EE++   + I
Sbjct: 832 AINAPMQGTAADIIKRAMINVDGWIRGIEDESI--RMLMQVHDELVFEIREEKLEEYTAI 889

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   M  A      L VPL V     +NW +
Sbjct: 890 IKEKMSAAA----ELHVPLLVEAGTGDNWDQ 916


>gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2]
          Length = 913

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 358/986 (36%), Positives = 539/986 (54%), Gaps = 98/986 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 61  AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENI---LINASRIKQKKRRENILE 235
           GD +DNIPG+PG+G KTA  LL          Y +L+ +    I  ++    K  EN   
Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L   +     LI+  + LEF   ++ +       
Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEA 296

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N E               I+ E+D D  +  + F +                      
Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                                   W++KLE     +F   T ++DA  ++ + ++ + + 
Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           + +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L ++    ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L++  L  +++LQ+HDELV EV EE +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVEQVCEGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
             A      L VPL V   V +NW E
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 369/1001 (36%), Positives = 558/1001 (55%), Gaps = 81/1001 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V      + A
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV      T+N     E +I  +       + + +     + +EQT  K+ ++R   
Sbjct: 296 N--PV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS----- 412
                     Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 413 ----TLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLT-KEILSYLKKFFENEH 461
                L  K+  + + +    DL    ++  T       KN L     L  LK   E+  
Sbjct: 386 ACYIPLTHKEQVTLEPQQS--DLFAEPAEAETTTSFELAKNQLNLTACLIELKPLLESAD 443

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR-- 517
             KIG NIKYD  +   +G+ + G   D ML SY L+S GR  H++  +A ++L +    
Sbjct: 444 VKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIE 501

Query: 518 -KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLD 573
            +EI    K+ +  DKI+     ++A E+++V ++L  +L P+L  EK   L+ ++  ++
Sbjct: 502 FEEIAGKGKNQLTFDKIAIDIASQYAAEDADVTMKLHQVLAPEL--EKAPTLVKLFNEIE 559

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+++V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +IL
Sbjct: 560 MPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEIL 619

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           FTKL  P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN
Sbjct: 620 FTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMIN 679

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            +T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQI
Sbjct: 680 PKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQI 739

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S
Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMS 799

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F L+ QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI 
Sbjct: 800 EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIK 859

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S  +  R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV 
Sbjct: 860 SSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVK 918

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EE +   SQ+I   MEKA    I L+VPL   + V +NW E
Sbjct: 919 EELVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 367/991 (37%), Positives = 537/991 (54%), Gaps = 93/991 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N L LVDGSS++YRAF+A+     R   GLP  A+    NM+  L    RK+    
Sbjct: 1   MAPSNPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSL----RKQYPDC 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD    TFR++IYP+YKANR  +P+ L  Q+  +    +A G P + ++G EADD
Sbjct: 57  HVAVVFDAKGKTFRDDIYPEYKANRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T    A ++   V I + DKD+ QLVS    L DT+K+ K D E VI+K+G+PPE +
Sbjct: 117 VIGTLARQATEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENI 233
           +   AL GD +DNIPG+ G+G KTA  LLQ  G+++ I  N  ++        K   +  
Sbjct: 177 IDYLALMGDKVDNIPGMTGVGEKTALALLQGIGSIDEIAANLDKVAALGFRGSKAFADKF 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E  E  RLS  L  ++TDV +   LE L L   +   L++  +  E   LI  + +   
Sbjct: 237 REQEEQVRLSYVLATIKTDVALEQSLEELQLGPIDKEALLAVYREYELRNLIKELES--- 293

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                              G A E+  + D            +  + + + +T  +  L 
Sbjct: 294 -------------------GGAEESGAEGD-----------DEGAAPVAAIETDYRCIL- 322

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                              +  +  +W+ +L+     +F   T ++D   ++ + +    
Sbjct: 323 -------------------DEAEFDEWLARLQAAPLFAFDTETTSLDYMEARVVGV---- 359

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKY 471
                  SF +E       V    D  G      E  +L  LK   E+   LK+G N+KY
Sbjct: 360 -------SFAIEP-GKAAYVPFGHDYLGAPVQLTEAVVLGKLKPLLEDPARLKVGQNLKY 411

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSS 527
           D+ VL  +GI ++G   D ML SYVL+S  S HD+ S+A+++L   + + +EI       
Sbjct: 412 DRNVLLNHGIELQGIAYDTMLESYVLNSTASRHDMDSLARRYLNAETISFEEIAGKGVKQ 471

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           +  ++I   Q   +A E++++ L+L   L  KL  E  L  V+  ++ P++ V+++ME  
Sbjct: 472 LTFNQIELEQAAPYAAEDADITLRLHQALWGKLSAEPGLAKVFSEIELPLLPVLARMERL 531

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G  I+  LL Q S EI   L  LE+  ++L+G++FNLSSPKQLG+ILFTKL  P   KT 
Sbjct: 532 GTTIEPKLLHQQSQEIEVRLAELEKQAHELAGQEFNLSSPKQLGEILFTKLGLPIIKKTP 591

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G   T  + L ++      + + ++E R L+K+KSTY D LP  I  +T RVHT Y  A
Sbjct: 592 KGAPSTAEEVLAEL-AETYELPQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQA 650

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRL+S +PNLQNIP++ + G++IR+AFI     KL++ADYSQIELRI+AH++    
Sbjct: 651 VAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHLSGDKG 710

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F    DIH+  AAE+FGV +E V+  MRR AK INF +IYG+S F LA QL I R+
Sbjct: 711 LLTAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKAINFGLIYGMSAFGLAKQLGIGRA 770

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  Y+  YF R+PG+ EY+E+T+      GYVET+FGRR++  +I S  + +R   ERA
Sbjct: 771 EAQKYMDLYFERYPGVLEYMERTRQQADAQGYVETLFGRRLYLPDIKSRNAGLRKAAERA 830

Query: 887 AINAPIQGSAADITRRAMISVH---KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           AINAP+QG+AADI +RAMI+V    + +ED  +  +ML+Q+HDELVFE+ EE++     I
Sbjct: 831 AINAPMQGTAADIIKRAMINVDGWIRGIEDQSI--RMLMQVHDELVFEIREEKLEEYIAI 888

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   M  A      L VPL V     +NW +
Sbjct: 889 IKEKMSAAA----ELDVPLVVEAGTGDNWDQ 915


>gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
          Length = 916

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 349/954 (36%), Positives = 533/954 (55%), Gaps = 71/954 (7%)

Query: 32  GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEML 91
           G P  A+ G  NML  L+   +     +H AV+FD    TFR+E++  YK++RP +P+ L
Sbjct: 21  GEPTGAMYGVLNMLRSLIMQYKP----THAAVVFDAKGKTFRDELFEHYKSHRPPMPDDL 76

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             Q+  +    +A G+P + + G EADD+I T    AEK G  V I + DKD+ QLV+P 
Sbjct: 77  RAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPN 136

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             L +T+    +  E V+ K+G+PPE ++   AL GDS DNIPG+PG+G KTA  LLQ  
Sbjct: 137 ITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGL 196

Query: 212 GNLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           G L+ +     +I        K     + +  E A LS +L  ++TDV + +  E L ++
Sbjct: 197 GGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQ 256

Query: 266 DCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
                 L+   K  EF +    V       A   +P                        
Sbjct: 257 QPAAEELLGLFKKYEFKRWTADVEAGKWLQAKGAKPAA---------------------- 294

Query: 326 IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
               Q +S++D+  ++ +                   I+ D+Y  I++ + ++ W+ KLE
Sbjct: 295 --KPQETSVADEAPEVTATV-----------------ISYDNYVTILDEETLKAWIAKLE 335

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
                +F   TD++D   +  + ++ + ++        V   ++D     S++       
Sbjct: 336 KAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYIPVAHDYLDAPDQISRERA----- 389

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504
               L  LK   E+E  LK+G N+KYD+ +L  YGI +RG   D ML SY+L+S    HD
Sbjct: 390 ----LELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHD 445

Query: 505 IASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           + S+A++WL +   T +EI    K+ +  ++I+  +   +A E+++V LQL L + P L 
Sbjct: 446 MDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 505

Query: 562 VEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
             K  L+V+E ++ P++ V+S++E  G++ID  +L   S E++  L  LE+  ++++GE+
Sbjct: 506 KHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEE 565

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNLSS KQL  ILF K       KT  G   T+ + LE++   D P+ K ILE+R L+K+
Sbjct: 566 FNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKL 624

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           KSTY D LP  IN +T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+P
Sbjct: 625 KSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAP 684

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
               ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ + RR 
Sbjct: 685 EDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRS 744

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK INF +IYG+S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+   ++ GYVE
Sbjct: 745 AKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVE 804

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T+ GRR++  +I S   + R   ERAAINAP+QG+AADI +RAMI+V   L+  +   +M
Sbjct: 805 TLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRM 864

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++Q+HDELVFEV  +++   ++ I H + + C     L VPL V +    NW +
Sbjct: 865 IMQVHDELVFEVHRDDVDAVAKQI-HQLMENC---TRLDVPLLVEVGSGENWDQ 914


>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
          Length = 959

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 347/993 (34%), Positives = 552/993 (55%), Gaps = 74/993 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 19  ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 73

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+++YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 74  ACVFDAKGKTFRDDLYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVI 133

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V+ K+G+PP K+V 
Sbjct: 134 GTLAERATREGVRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPGKIVD 193

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L++++  A  IK     EN+    +   
Sbjct: 194 YLSLIGDTVDNVPGVPKVGPKTAVKWLGEYGSLDSVIARAGEIKGVVG-ENLRNTLDWLP 252

Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  +   +P    LI    +  +L+ F     F   +   +         
Sbjct: 253 KGRELLTVKTDCDLATEVPTFAALIDGGEDRAKLVDFFGRYGFKTWLREASGE------- 305

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                  +  T + G A +      T +K     + + Q S  + E  P ++        
Sbjct: 306 ------SLPDTRSVGAARKAA----TPVKQYAPEAAAQQASLFDVEAPPAEV-------- 347

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +     ++ W++ L+          T ++D   ++ + +++S      
Sbjct: 348 --------KYETVTTEAQLESWMRLLDASALVCLDTETTSIDPMQAQLVGLSLSVEPG-- 397

Query: 419 DTSFKVETIFIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
                 +  +I ++ H   D +G      L +E +L+ +K + E+    K+G ++KYD  
Sbjct: 398 ------QACYIPVA-HRGPDVSGLEAAGQLAREAVLARMKPWLEDASRKKVGQHLKYDAH 450

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPI 530
           V   +GI++RG   D ML SYVL S R+ H + ++A++ L   + T +E+     S I  
Sbjct: 451 VFANHGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGASQIGF 509

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           D++   +  E+A E++++ L+L   + PK+  + KL +VYE+++ P   V+ +ME  G+ 
Sbjct: 510 DEVPLDRATEYAAEDADITLRLHRAMYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVL 569

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID + L + S  + + LL LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT +G 
Sbjct: 570 IDAERLARQSTGLGQRLLELEQQAYALAGQPFNLNSPKQIGEIFFTQLKLPVIKKTASGA 629

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +
Sbjct: 630 PSTDEEVLQKL-AEDYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV 688

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH+++   L +
Sbjct: 689 TGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLR 748

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R  A 
Sbjct: 749 AFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAK 808

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERAAIN
Sbjct: 809 LYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAIN 868

Query: 890 APIQGSAADITRRAMISVHKSLEDH--------KLATKMLLQIHDELVFEVPEEEITTAS 941
           AP+QG+AAD+ + +M++V   L+           + T+ ++Q+HDELV EVP+EE++   
Sbjct: 869 APMQGTAADLIKLSMLAVQDWLDGSPSTGKPGAPMRTRQVMQVHDELVLEVPQEELSLVR 928

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +   M         LRVPL   + V  NW+E
Sbjct: 929 ERLPELMCGVA----ALRVPLVAEVGVGANWEE 957


>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
 gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
          Length = 906

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 348/956 (36%), Positives = 536/956 (56%), Gaps = 71/956 (7%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +P NAI G  NM+  ++    ++  +   AVIFD    TFR+E+Y  YKA+RP +P+ L 
Sbjct: 6   IPTNAIYGVVNMIRSMM----RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV    
Sbjct: 62  CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            L +T+    +D + VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G
Sbjct: 122 TLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181

Query: 213 NLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            LE +  N  +I        K   + + E  + A+LS +L  ++ DV +    + L+ + 
Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQT 241

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +   L+S    L F   +  +               LD  T    G+    E  + +++
Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GVVTADEQTKTSSV 282

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
             S        T+  ++   P+              I+   Y  I+N +D Q W++KL+ 
Sbjct: 283 IVS--------TTATHAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQ 325

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   TD +D   +  + ++ + + + +     V   ++D      +D        
Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW------- 377

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505
             +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+
Sbjct: 378 --VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435

Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P  ++
Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LI 493

Query: 563 E---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           E   KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+  Y+L+G+
Sbjct: 494 EQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLEQLEQKAYELAGQ 553

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNLSSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K
Sbjct: 554 PFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAK 612

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++
Sbjct: 613 LKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVA 672

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           P   K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR
Sbjct: 673 PHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRR 732

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYV
Sbjct: 733 RAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYV 792

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLAT 918
           ETIFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E +     
Sbjct: 793 ETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRV 852

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K+L+Q+HDELVFEV E  ++     +   ME A      L VPL       +NW +
Sbjct: 853 KLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWDQ 904


>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
 gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
          Length = 957

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 353/988 (35%), Positives = 549/988 (55%), Gaps = 55/988 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   L LVDGSS++YRAF+A P L R   G P +A  G    +  +LQ+ RKE  A + A
Sbjct: 11  KPKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPSSAPTGAIRGMINMLQSLRKEVPADYAA 69

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            IFD    TFR+ +YP+YKA+R  +P+ L  Q+  +    +  G   + + G EADD+I 
Sbjct: 70  CIFDDKGPTFRDALYPEYKAHRSPMPDDLRSQIEPIHEVVRLMGWKVLAVPGVEADDVIG 129

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A ++G  V + S DKDL QLV+    + DT+   + D+  V  ++G+PP+ MV  
Sbjct: 130 TLAVTAARQGIEVIVSSGDKDLAQLVNSHITIIDTMNGRRRDVAGVEAEFGVPPQLMVDF 189

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q L GD IDN+PG+P +G KTAA  LQEYG+L+ ++ NA +IK     EN+ +  +   L
Sbjct: 190 QTLVGDVIDNVPGVPKVGPKTAAKWLQEYGSLDAVVANADQIK-GVVGENLKKSLDWLPL 248

Query: 243 SRKLVMLRTD------VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            R+L+ ++TD      +P    L+ +     +   L  F +   F K + R         
Sbjct: 249 GRQLLTIKTDCDLDGWMPDLPALDSIATGTMDTGALAIFYEKYGF-KGLARTLGGGAASV 307

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           A+       +   E      +    R  T +   F      +  I S             
Sbjct: 308 ASKASSGFGVGPKERSDAGSDPNSVRQLTREPGLFDEPEAASDPIPSS------------ 355

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 + N  Y  I+  +   +W+ K++     +    T ++D   ++ + I+ S    
Sbjct: 356 ------VTNLHYDTILTWEAFDRWLAKVQAADLVALDTETTSLDEMRAQIVGISFSVTPG 409

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                   E  +I L+ H   D+  +  L  ++L+ LK + ++    K+G ++KYD+ V 
Sbjct: 410 --------EAAYIPLA-HAYPDAPAQLPLA-DVLAKLKPWLQDASHKKLGQHVKYDRHVF 459

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
             +GI ++G+  D ML SYVL+  +  H +AS+A++ L  +    +++     + I  D+
Sbjct: 460 ANHGIEVQGYAHDTMLQSYVLEVTKP-HGLASLAERHLGRSGISFEDLCGKGANQICFDQ 518

Query: 533 ISDSQVQEHAIENSNVILQ----LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           +  +Q  +++ E+S++ L     LW LL+     +KL  +YE L+    + + ++E  G+
Sbjct: 519 VDIAQAAQYSCEDSDMTLDVHRALWPLLQAN---DKLRFIYE-LEIASSEALYRIERNGV 574

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID   L   S E+ + +L LE+  ++L+G+ FNLSSPKQ+ +I FTKL  P   KT TG
Sbjct: 575 LIDGPTLAVQSHELGQRILQLEKEAHELAGQPFNLSSPKQIAEIFFTKLGLPVVKKTPTG 634

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L+++   D P+   ILE R L+K+K TY D L    + RT RVHT Y+ A  
Sbjct: 635 SPSTDDEVLQKL-AEDYPLPAKILEHRGLAKLKGTYTDKLAQLAHPRTGRVHTHYAQAIA 693

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRL+SLEPNLQNIP++T  G+++R AF++PP   + SADYSQIELRI+AHI+    L 
Sbjct: 694 VTGRLSSLEPNLQNIPVRTPEGRRVREAFVAPPGSVIASADYSQIELRIMAHISGDAALL 753

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + +D+HR  A+EIFGV+  +V+ + RR+AK INF +IYG+S + LA  L I  + A
Sbjct: 754 LAFHDGIDVHRATASEIFGVDRAQVTSEQRRYAKVINFGLIYGMSAYGLAKALSIDNTAA 813

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +YI+RYF R+PG+  Y+E T+   ++ GYVET+FGRR++  EINSP    R+  ERAAI
Sbjct: 814 KNYIERYFDRYPGVKNYMEHTRALAKRQGYVETVFGRRLYLPEINSPNGPRRSGAERAAI 873

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AAD+ + +M+ V + +++ K ATKM++Q+HDELVFEVPE EI      + H +
Sbjct: 874 NAPMQGTAADLIKLSMVKVQQVIDEEKRATKMIMQVHDELVFEVPESEI----DWVRHEV 929

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +      +L+VPL   + V  NW + +
Sbjct: 930 PRLMAGVAHLKVPLLAEVGVGANWDKAH 957


>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
 gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
          Length = 937

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 361/987 (36%), Positives = 536/987 (54%), Gaps = 88/987 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRA++A P  +   DG P  A+ G  NML  LL+    E    H AV
Sbjct: 21  ENPLILIDGSSYLYRAYHAAPNFTNS-DGEPTGAVYGVVNMLRSLLRQFSTE----HIAV 75

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR++IYP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 76  IFDAKGKTFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGT 135

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+ +  +    V++K+GI PE ++   
Sbjct: 136 LATQASKAGMPVLISTGDKDMAQLVDENVTLINTMTDVVMGPAGVVEKFGIGPELIIDYL 195

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ I  N   I        K   + + +  
Sbjct: 196 ALMGDKVDNIPGVPGVGEKTAKALLTGVGGLDAIYDNLDAIPALGFRGSKTMPKKLADNK 255

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD---- 293
           E A +S +L  ++ DV +      L+  + +   L S    L+F + ++ +    D    
Sbjct: 256 EAAYMSYELATIKLDVELDSAPHELLKTEPDTDELTSLFGKLQFRRWLSEMLDGSDGKIV 315

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            D    EPV       E K +A         TI  S + ++ D+ S              
Sbjct: 316 ADEKASEPV-------EKKVVA--------PTIDRSGYETILDEVS-------------- 346

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                                   + W+  L      +F   TD++D   +  + ++ + 
Sbjct: 347 -----------------------FKTWLDTLTAADVVAFDTETDSLDYMTANLVGVSFA- 382

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           +++       V   ++D      +D          +L+ LK   E+    K+G N+K+D 
Sbjct: 383 VEEGKAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPLLEDPAQNKVGQNLKFDM 433

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +L RY I+M+G + D ML SYV +S    HD+ S+A ++L +   + +E+    K  + 
Sbjct: 434 SILARYDINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLT 493

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I       +A E++++ L+L  LL  K+   E+L  V+E ++ P++ V+S++E TG+
Sbjct: 494 FNQIDLDVAGPYAAEDADITLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGV 553

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  LL   S EI+  L  LE   Y+++ ++FNLSSPKQL  ILF K+  P   KT +G
Sbjct: 554 LIDSMLLSAQSTEIAARLDELETKAYEIAEQEFNLSSPKQLQAILFEKMGLPILKKTPSG 613

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L+++   D P+ K +LE+R L+K+KSTY D LP  +N  T RVHT Y  A T
Sbjct: 614 APSTNEEVLQELAL-DYPLPKILLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVT 672

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++   G++IR+AFI+P   K+++ DYSQIELRI+AH++    L 
Sbjct: 673 ATGRLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALL 732

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+   DIH   AAEI G+ IE V+ + RR AK INF +IYG+S F LA QL + R+EA
Sbjct: 733 EAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEA 792

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            DY+  YF R+PG+ EY+E T+    + GYVET+FGRR++  +I S     R   ERAAI
Sbjct: 793 QDYMNVYFERYPGVLEYMESTRIHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAI 852

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAM+ V + +E  +    ++L+Q+HDELVFEV E E+   S  +   
Sbjct: 853 NAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQESELDAVSADVRRL 912

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A      L VPL  +    +NW E
Sbjct: 913 MELAA----ELDVPLIADTGSGDNWDE 935


>gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024]
          Length = 881

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 346/933 (37%), Positives = 527/933 (56%), Gaps = 68/933 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           QG+AADI +RAMI+V   L+  +   +M++Q+H
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVH 881


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 957

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 364/999 (36%), Positives = 558/999 (55%), Gaps = 77/999 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V      + A
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV      T+N     E +I  +       + + +     + +EQT  K+ ++R   
Sbjct: 296 N--PV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413
                     Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463
                L  K+  + + +   +      ++ +T      K++     L+ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---K 518
           KIG NIKYD  +   +G+ + G   D ML SY L+S GR  H++  +A ++L +     +
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIEFE 503

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKP 575
           EI    K+ +  DKI+     ++A E+++V ++L  +L P+L  EK   L+ ++  ++ P
Sbjct: 504 EIAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPEL--EKAPTLVKLFNEIEMP 561

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +++V+S++E  G+ ID + L   S EI + L  LE+ ++  +GE FNL+S KQL +ILFT
Sbjct: 562 LVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAGEVFNLASTKQLQEILFT 621

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL  P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN++
Sbjct: 622 KLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQK 681

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIEL
Sbjct: 682 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIEL 741

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F
Sbjct: 742 RIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF 801

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+ QL I R++A  Y++ YF R+P + +++   +    + GYVET+FGRR++  EI S 
Sbjct: 802 GLSNQLGISRADAKKYMELYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSS 861

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +  R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE
Sbjct: 862 NAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEE 920

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   SQ+I   MEKA    I L+VPL   + V +NW E
Sbjct: 921 LVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 957

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 364/997 (36%), Positives = 555/997 (55%), Gaps = 73/997 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRGELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V      + A
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV      T+N     E +I  +       + + +     + +EQT  K+ ++R   
Sbjct: 296 N--PV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413
                     Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463
                L  K+  + + +   +      ++ +T      K++     L+ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---K 518
           KIG NIKYD  +   +G+ + G   D ML SY L+S GR  H++  +A ++L +     +
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIEFE 503

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMI 577
           EI    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P++
Sbjct: 504 EIAGKGKNQLTFDKIAIDVASKYAAEDADVTMKLHQVLVPELDKTPTLVKLFNEIEMPLV 563

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           +V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFTKL
Sbjct: 564 EVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFTKL 623

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
             P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN++T 
Sbjct: 624 GLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTG 683

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI
Sbjct: 684 RVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRI 743

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH+A    +   F    DIH   AAEIFG+ +++V+ + RR AK INF +IYG+S F L
Sbjct: 744 MAHLANDEGMITAFAEGKDIHCATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGL 803

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           + QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S  +
Sbjct: 804 SNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNA 863

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             R   ER AINAP+QG+AADI + AMI + K++       KM++Q+HDELVFEV EE I
Sbjct: 864 MRRKAAERVAINAPMQGTAADIIKVAMIDIDKAIRGDD-NIKMIMQVHDELVFEVKEELI 922

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              SQ+I   MEKA    I L+VPL   + V +NW E
Sbjct: 923 EHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955


>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
 gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
          Length = 923

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 346/983 (35%), Positives = 543/983 (55%), Gaps = 79/983 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRA++A P  +   DG P  AI G  NML  +L+    E    H AV
Sbjct: 6   ENPLILIDGSSYLYRAYHAAPNFTNS-DGEPTGAIYGVVNMLRSMLRQFSTE----HIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRSQIEPLHAVIKAMGLPLIAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  A ++G  V I + DKD+ QLV     L +T+ +  +D   V+ K+GI PE ++   
Sbjct: 121 LSTQASQQGMPVLISTGDKDMAQLVDQNVTLINTMTDVVMDPAGVVDKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDTLYDNLDDIAALGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +S KL  ++ DV + +  + L     +   L      L+F + +  +         
Sbjct: 241 EAAYMSYKLATIKLDVELDVTPDELRKGVPDTDVLTELFGKLQFRRWLTEM--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   ++ ++ + +A E                   ++  + +E+           K
Sbjct: 292 --------LDGSDGRIVADE-------------------KSGDVPAEK-----------K 313

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  +++ +    W+++L+   + +F   TD +D   +  + ++ + +++ 
Sbjct: 314 AVAPTIDRSGYETVLDKESFATWLEQLKAAEAFAFDTETDGLDYMTANVVGVSFA-IEEG 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D      +D          +L  LK   E+    KIG N+K+D  ++ 
Sbjct: 373 KAAYVPLAHDYLDAPAQLDRDW---------VLEQLKPLLEDPKQAKIGQNLKFDASIVA 423

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L +   + +E+    K  +  ++I
Sbjct: 424 RYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI 483

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ L+L   L PK+  + KL HV+E ++ P++ V+S+ME TG+ +D 
Sbjct: 484 DLEQAGPYAAEDADITLRLHNTLYPKVEADDKLKHVFENIEMPLVPVLSRMERTGVYVDS 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  +E+  ++++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 544 MLLGAQSTEIAVRLDEIEKKAFEIAEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K +LE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 604 NEEVLQELAL-DYPLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++    K+++ DYSQIELRI+AH++    L   F 
Sbjct: 663 LSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFR 722

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI  ++IE VS + RR AK INF +IYG+S F LA QL + R+EA +Y+
Sbjct: 723 HGKDIHAATAAEILSLDIENVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYM 782

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+N   + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 783 NVYFERYPGVLEYMESTRNAASEQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI + AMI+V   ++       ++L+Q+HDELVFEV E  +   +  +   ME+A
Sbjct: 843 QGTAADIIKLAMIAVDDWVQQQPEGDVRLLMQVHDELVFEVKESALEAVTASVKALMEQA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
            +    L VPL  +    +NW +
Sbjct: 903 AM----LDVPLIADTGYGDNWDQ 921


>gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
 gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
          Length = 917

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 356/986 (36%), Positives = 539/986 (54%), Gaps = 98/986 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 10  LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 64

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 65  AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++   AL 
Sbjct: 125 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 184

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENI---LINASRIKQKKRRENILE 235
           GD +DNIPG+PG+G KTA  LL          Y +L+ +    I  ++    K  EN   
Sbjct: 185 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 241

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + L+ L   +     LI+  + LEF   ++ +       
Sbjct: 242 -REQAFLSYQLATIKTDVELDVQLDQLYPGEPQREALIALYRELEFKNWLDDLLREAK-- 298

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                    +   +      I+ E+D D  +  + F +                      
Sbjct: 299 ---------EAGESGEAETPIQAEVDYDVVLDQAGFDA---------------------- 327

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                                   W++KLE     +F   T ++DA  ++ + ++ + + 
Sbjct: 328 ------------------------WLKKLEQAELIAFDTETTSIDAQQAQVVGVSFA-VK 362

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           + +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 363 EGEAAYVPLAHSYMGVPDQLERDA---------VLRALKPLLEDPQKLKVGQHAKYDINV 413

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
           L      I+M+G   D ML SYVLDS  + HD+ S+A K+L ++    ++I       + 
Sbjct: 414 LANASTPIAMQGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 473

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V++++E  G 
Sbjct: 474 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 533

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 534 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 593

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 594 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 653

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AFI+P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 654 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPQGYKLLAADYSQIELRIMAHLAKDEGLL 713

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 714 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 773

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 774 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 833

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L +  L  +++LQ+HDELV EV E+ +    + I   M
Sbjct: 834 NAPMQGTAADIMKRAMVAVDNWLRESGLDARVILQVHDELVLEVREDLVEQVREGIRPLM 893

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
             A     +L VPL V   + +NW E
Sbjct: 894 SGAA----SLDVPLVVEAGIGSNWDE 915


>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
 gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
          Length = 914

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 351/981 (35%), Positives = 545/981 (55%), Gaps = 80/981 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L R  +G P  A+ G  NML +L    R +  A++ A 
Sbjct: 2   QNTLLLVDGSSYLYRAFHALPDL-RNKEGAPTGALYGIINMLRRL----RSDFPAAYIAC 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++Y +YKA R  +PE L  Q+  +  A +A G P I ++G EADD+I T
Sbjct: 57  VFDAKGKTFRDDLYAEYKAQRASMPEDLARQVEPIHEAVRAMGWPLIMVEGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G    I + DKDL QLV+    L +T+  E++D + V+ K+G+PPE++V   
Sbjct: 117 LAVDAVRHGMKAVISTGDKDLAQLVNDDVMLINTMSNERLDRDGVLAKFGVPPERIVDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTA   L +YG L+ I+ NA+ I      EN+ +  +    +
Sbjct: 177 TLIGDTVDNVPGVSKVGPKTAVKWLTQYGTLDGIVENAANIG-GAVGENLRKALDWLPQA 235

Query: 244 RKLVMLRTDVP-----ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           + L+ ++TD       ++IP E L+ ++ +  ++I       F   + R AT     AA+
Sbjct: 236 KVLITVKTDCDLVDHMVSIP-ESLMAKEQDPAKMIDLYARFGFKTWL-REAT-----AAS 288

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E V             I T    D             Q+   ++   P +         
Sbjct: 289 AEEV-------------IATAAPADA------------QSGLFDAPAAPAE--------- 314

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I+   D+ +W+  ++     S    T ++    ++ + I++   +   
Sbjct: 315 -------QRYDTILTEADLDRWLAIIDAAALTSIDTETTSLVPLQAQLVGISLCC-EPGV 366

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V   + D  V  S++          +L  ++ + E+    K+G N+KYD  +   
Sbjct: 367 AAYIPVAHRYADAPVQLSREL---------VLGKMQAWLEDPAKAKVGQNLKYDSHIFAN 417

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           +GI++RG   D ML SYV +S RS HD+ S+A + L  T    +E+     S I  D++ 
Sbjct: 418 HGITLRGIAHDTMLESYVFESHRS-HDMDSLALRHLGRTTITFQEVCGKGASQICFDQVD 476

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            ++  E+A E++++ LQL   + P++   E LL VYE+++ P   V+ ++E  G+ ID  
Sbjct: 477 IARATEYAAEDADITLQLHQAMLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTG 536

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L+  S E+ K +L +E + Y+L+G+ FNL+SPKQ+G+I F KL+ P   KT +G   T 
Sbjct: 537 ILQVQSHELGKRMLEIETSAYELAGQPFNLNSPKQIGEIFFEKLQLPVVKKTPSGAPSTD 596

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L ++   D P+ K +LE+R LSK+KSTY D LP  I+  T RVHT Y+    +TGRL
Sbjct: 597 EEVLAKL-AEDYPLPKVLLEYRSLSKLKSTYTDKLPKMIDPTTGRVHTNYAQTVAVTGRL 655

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS EPNLQNIPI+T  G++IR AF++P    ++SADYSQIELRI+AH++    + + F +
Sbjct: 656 ASNEPNLQNIPIRTAEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDANMLRAFAD 715

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIHR  AAEIF      V+ + RR+AK INF +IYG+S F LA  L I R  A  YI 
Sbjct: 716 GIDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMSAFGLAGNLGIERGAAQSYID 775

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF RF G+ +++++T+   + +GYVET+FGRR+   EINSP    R   ERAAINAP+Q
Sbjct: 776 KYFARFSGVKQFMDETRLKAKAHGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPMQ 835

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +M++V   LE   L + M++Q+HDELV EVP+EE+    +++   +     
Sbjct: 836 GTAADLIKLSMVAVQGWLETDGLKSLMVMQVHDELVLEVPQEEL----ELVRVKLPALMA 891

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L+VPL   + +  NW E
Sbjct: 892 GVAELKVPLTAEVGIGKNWDE 912


>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 564

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 278/533 (52%), Positives = 381/533 (71%), Gaps = 5/533 (0%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
           ++ L  LK   E+E  LK+  N+KYD L+L RYGI  R F+D ML+SYVLD+G  +H + 
Sbjct: 30  RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFDDTMLISYVLDAGTGAHGMD 89

Query: 507 SIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            +++K+L +T    K++  S K+++  D +   +   +A E+++V L+LWL+L+P+L   
Sbjct: 90  PLSEKFLGHTPIPYKDVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAA 149

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            L  VYERL++P++ V+++ME  G+ +D+ +L ++S E+++    LE+ IY L+GE+FN+
Sbjct: 150 GLTSVYERLERPLLPVLARMEARGVTVDRQILSRLSGELAQGAARLEDEIYTLAGERFNI 209

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            SPKQLGDILF K+    G+KTKTGQW T+A  LE +      + + I++WRQL+K+KST
Sbjct: 210 GSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKST 269

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D+LP +++  T+RVHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  
Sbjct: 270 YTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGH 329

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           KLISADYSQIELR+LAH+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK 
Sbjct: 330 KLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKA 389

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           INF IIYGIS F LA QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIF
Sbjct: 390 INFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 449

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKML 921
           GRRI+Y EI S   S+R  NERAAINAPIQGSAAD+ RRAMI +  +L    LA   +ML
Sbjct: 450 GRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKMEPALAQAGLAERVRML 509

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDEL+FEV +E++  A  IIV  ME A +P + +RVPL+V+ + + NW E
Sbjct: 510 LQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLRVDARAATNWDE 562


>gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1]
 gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I
 gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1]
          Length = 913

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 357/986 (36%), Positives = 539/986 (54%), Gaps = 98/986 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 61  AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENI---LINASRIKQKKRRENILE 235
           GD +DNIPG+PG+G KTA  LL          Y +L+ +    I  ++    K  EN   
Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L   +     LI+  + LEF   ++ +       
Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEA 296

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N E               I+ E+D D  +  + F +                      
Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                                   W++KLE     +F   T ++DA  ++ + ++ + + 
Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           + +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L ++    ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L++  L  +++LQ+HDELV EV E+ +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVCEGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
             A      L VPL V   V +NW E
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911


>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
 gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
          Length = 914

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 362/980 (36%), Positives = 539/980 (55%), Gaps = 81/980 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA++A P LS    G+   A+ G  NML  L    R +    + A++
Sbjct: 4   NTLILVDGSSYLYRAYHAMPSLSNSQ-GMLTGAVYGVTNMLKSL----RADYQPIYVAIV 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+E+YPDYK NRP +PE L+ Q+       +A G P +   G EADD+I T 
Sbjct: 59  FDAKGKKFRHELYPDYKKNRPPMPEELVVQISSTHDMVRALGFPLLMENGVEADDVIGTL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AE  G    I S DKD  QLV+ +  L +T+K  ++D+E V +K+GIPP  +V   +
Sbjct: 119 AKQAEAVGMQTLIFSNDKDFAQLVNESITLINTMKNTRLDVEGVTEKFGIPPALIVDYLS 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD  DNIPG+  IG KTA  LL+ YG+LE I+ N  +IK  K  +N+ E      L+R
Sbjct: 179 LIGDKSDNIPGVKTIGPKTAIKLLKNYGSLEAIIENIPQIK-GKVADNLREALSYLPLTR 237

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L+M++ DVP+    + L L   +  +L      L F K +  + T+ D           
Sbjct: 238 QLLMIKCDVPLLNTPQQLKLTTPDVDKLRELYTKLAFKKWLAELNTSPDSS--------- 288

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            I++   +GI+   +         + F  +   TS                         
Sbjct: 289 -ISSFRKEGISHSED---------ASFEGVEGGTS------------------------- 313

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           +  Y  I+   D+  W+ +L      +F   T ++D   ++ + ++ +   Q  + ++  
Sbjct: 314 HPKYHTILTQADLDDWLNRLNQAELFAFDTETTSLDYLQAQIVGVSFAV--QVGEAAY-- 369

Query: 425 ETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                   V  + D  G  +      +L+ LK   EN    KIG N+KYD  VL  +GI 
Sbjct: 370 --------VPLAHDYLGAPQQLSCDNVLAVLKPLLENPKKRKIGQNLKYDAHVLANHGIH 421

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQV 538
           ++G   D ML SYVL+S  + HD+ S+AQ +L   + T +++    K  +  ++I     
Sbjct: 422 LQGMAFDTMLESYVLNS-TTKHDMDSLAQIYLQKTTITFEDVAGKGKKQLSFNQIPLEHA 480

Query: 539 QEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +A E++++ LQL    W  L+ +    KL  +++ L+ P+I V+ +ME  G++ID  L
Sbjct: 481 TPYACEDADITLQLHQNLWEQLQNR---PKLERIFDDLEMPLIPVLIRMERHGVKIDATL 537

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L Q SAE++  L  LE+  Y+ +G +FNL+SPKQL  ILF KL  P   KT      T  
Sbjct: 538 LHQQSAELATRLQQLEQAAYEEAGTEFNLNSPKQLQTILFDKLSLPVLKKTPKKDPSTAV 597

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE++   D P+ + IL +R LSK+KSTY D+LP  IN +T RVHT Y  A T TGRL+
Sbjct: 598 EVLEELAI-DYPLPQLILIYRSLSKLKSTYTDTLPQQINPKTGRVHTSYHQAVTTTGRLS 656

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPI++  G++IR+AFI+P    L++ADYSQIELRI+AH+++   L       
Sbjct: 657 STNPNLQNIPIRSAEGRRIRQAFIAPKGYCLLAADYSQIELRIMAHLSEDEKLLSALTAG 716

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH+ VAAE+F + +++V+ + RR AK +NF ++YG+  F LA QL I R +A  Y+  
Sbjct: 717 EDIHKAVAAEVFDLAMDEVTTEQRRQAKAVNFGLMYGMQAFGLAKQLGIERHQAQIYMDA 776

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y++  +   +Q GYVET+FGRR++  EI +     R   ER AINAP+QG
Sbjct: 777 YFARYPGVKAYMDDMRVLAKQQGYVETVFGRRLYIPEIKTRHIGRRQAAERTAINAPMQG 836

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ +RAM++V   +E   L  KML+Q+HDELVFE+ E  I  A   I+ +M +    
Sbjct: 837 TAADLIKRAMLTVDDWIEKSGLDVKMLMQVHDELVFEIAETVIEEAKVAIIEAMTQVA-- 894

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L+VPL V+I +  NW E
Sbjct: 895 --ELKVPLIVDIGIGKNWDE 912


>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
 gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
          Length = 911

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 360/978 (36%), Positives = 547/978 (55%), Gaps = 87/978 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + LVDGSS+++RA++A P L  S+ H   P  AI G  +M+ KL Q+       S   V+
Sbjct: 9   VVLVDGSSYLFRAYHALPPLMTSKSH---PTGAIKGVISMIRKLEQDFP----GSKMVVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN++Y DYKA RP +P+ L  Q+  +    +A G+P + + G EADD+I T 
Sbjct: 62  FDAKGKTFRNDLYEDYKATRPPMPDDLAVQIQPIHDMVRAMGLPLLIVSGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            + A  +G  V + + DKD+ QLVS    L +T+ + ++D + V++K+GI P+++V   A
Sbjct: 122 AHEATSKGIDVVVSTGDKDMAQLVSDHVTLINTMTDTRMDRDGVVEKFGIGPDQIVDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD +DNIPG+   G KTA   LQ + NL+NI+ ++  +K  K  E + E  ET  LSR
Sbjct: 182 LVGDKVDNIPGVNKCGPKTAVKWLQTWDNLDNIIEHSDEVK-GKIGEYLREATETLPLSR 240

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++TDV +   LE L L   +  +L+   +  E    I   A   + D+A       
Sbjct: 241 QLATIKTDVDLEFGLEDLKLRTQDDSQLLELFREYELRSWI---AELENGDSA------- 290

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D  +T+N                     ++ + ++  + E+T                  
Sbjct: 291 DEKSTDN---------------------AVDNSSNPASKEKT------------------ 311

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              YT + +  ++  W+ +L+   +  F   T+T    +     + +S   +  + ++  
Sbjct: 312 ---YTVVTDQAELDSWIDRLKK--APLFAFDTETTSLRYMDADVVGVSFAIEPGEAAY-- 364

Query: 425 ETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                   V    D  G    L ++ +LS LK   E+    K+G N+KYDK VL  +GI+
Sbjct: 365 --------VPFGHDYMGAPEQLDRDTVLSQLKPLLEDPKKAKLGQNLKYDKNVLANHGIN 416

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQV 538
           + G  ED ML SYVL+S  S HD+ S+A ++L   + T + I       +  ++I   Q 
Sbjct: 417 LNGIAEDTMLESYVLNSVGSRHDMDSLAMQYLGEQTITFESIAGKGAKQLTFNQIELEQA 476

Query: 539 QEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L   LRP+L    +L  VYE++D P++ V+S+ME  G  I    L++
Sbjct: 477 GPYAAEDADITLRLHQALRPQLEKTGRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLRK 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+++ +  LE+  ++ +GE FNL SPKQL  I + K+  P   KT  G   +TA+ +
Sbjct: 537 HSQELAERMAELEKEAHEEAGESFNLGSPKQLQAIFYDKMGLPVVKKTPKGA-PSTAEPV 595

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            Q    ++ + + ILE R LSK+KSTY D+LP  I+ RT R+HT Y  A T TGRL+S E
Sbjct: 596 LQELAHEHTLPRLILEHRSLSKLKSTYTDTLPELIHHRTGRIHTSYHQAVTATGRLSSSE 655

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G++IR+AF++P   KL++ADYSQIELRI+AH++    L   FE   DI
Sbjct: 656 PNLQNIPIRSEQGRRIRQAFVAPEGYKLVAADYSQIELRIMAHLSGDKGLLTAFEKGEDI 715

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FGV ++ VS   RR AK INF +IYG+S F L+ QL + R +A +YI RYF 
Sbjct: 716 HRATAAEVFGVAVDDVSGDQRRSAKAINFGLIYGMSAFGLSRQLDVGRHQAQEYIDRYFE 775

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P + +Y++  +     +GYVET +GRR++  EIN+    ++   ER AINAP+QG+AA
Sbjct: 776 RYPAVLKYMDNIRKQAHDDGYVETFYGRRLYLPEINARNKQMQQAAERTAINAPMQGTAA 835

Query: 898 DITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI +RAM+SV   L E H+   +M+LQ+HDEL+ EV E  + T    I   +EK      
Sbjct: 836 DIIKRAMVSVEDWLQEHHQDDARMILQVHDELILEVRESAVDT----IREGLEKRMSAAA 891

Query: 957 NLRVPLKVNIKVSNNWQE 974
           +L VPL V   V NNW E
Sbjct: 892 SLDVPLLVEAGVGNNWDE 909


>gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 932

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 355/984 (36%), Positives = 544/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NA+ G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVINMVRAMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+YP+YKA RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELYPEYKAQRPPMPDDLRCQIEPLHNVIRAMGLPLLSIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             + A + G  V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   
Sbjct: 121 LAHQASQAGIPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N  +I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTALYDNLDKIADLGFRGSKTMAKKLEDNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS +L  ++ DV +    E L+    +   LI     L F   +N +         
Sbjct: 241 ANAELSYELATIKLDVALDCTPETLLKATPDRDALIELYGQLSFKSWLNEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQ 356
            +E     +   E    ++            SQ + ++D  + KI+  Q           
Sbjct: 292 -LEGGTGVVEAAEKSAASVAVS-------GASQAAPMADSVAVKIDRSQ----------- 332

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  IV+     +W+ KL +    +F   TD++D   +  + ++ + + +
Sbjct: 333 -----------YETIVDEAAFNRWLDKLRSAEVFAFDTETDSLDYMVANLVGVSFA-VAE 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     V   ++D      +D           L+ LK   E+    K+G N+KYD  +L
Sbjct: 381 GEAAYVPVAHDYLDAPQQLDRDWA---------LAQLKPILEDAQQAKVGQNLKYDASIL 431

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            RY I+M+G   D ML SYV +S    HD+ S+A +++ ++    +++    K+ +  ++
Sbjct: 432 ARYDINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQHSCISFEQVAGKGKNQLTFNQ 491

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           I   Q   +A E+++V L+L   L P L  + KLL VY  ++ P++ V+S++E TG+ I+
Sbjct: 492 IDLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYRDIEMPLVPVLSRIERTGVLIN 551

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LL   S EI++ L  LE+  +D++G++FNLSSPKQL  I F ++K P   KT +G   
Sbjct: 552 DMLLGAQSQEIAQRLDELEKKAFDIAGQEFNLSSPKQLQTIFFDQMKLPVIKKTPSGTPS 611

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+++   D P+   ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TG
Sbjct: 612 TNEEVLQELAL-DYPLPAVILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATG 670

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L + F
Sbjct: 671 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAF 730

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +   DIH   AAEI G++I++V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y
Sbjct: 731 QQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAY 790

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ +Y+E T++   + GYVET+FGRR+H  EI S     R   ERAAINAP
Sbjct: 791 MDTYFERYPGVMQYMEDTRSTAAEQGYVETLFGRRLHLPEITSRNGMRRKAAERAAINAP 850

Query: 892 IQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI ++AM+ V   +E       K+L+Q+HDELVFEV E  ++     +   ME 
Sbjct: 851 MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESALSEIESKVQKLMES 910

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L+VPL       +NW E
Sbjct: 911 AA----ALKVPLVAEAGHGDNWDE 930


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 364/986 (36%), Positives = 567/986 (57%), Gaps = 79/986 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+DG + IYRA++A   TP L+   +GL   AI GF N L ++L+N +     +H AV
Sbjct: 4   LFLLDGMALIYRAYFALSKTPRLT--SNGLNTGAIMGFTNTLLEVLKNQK----PTHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A T R+  +  YKA+R K+PE L   +P +    + F IP I   G+EADDII T
Sbjct: 58  VFDTDAPTNRHIEFESYKAHREKMPEDLSASIPYIFRLIEGFNIPIITKDGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP-EK 178
                E++GF V  ++ DKD  QLVS    +Y   +     E   +  ++ KW I    +
Sbjct: 118 LAKEGEQKGFTVYCMTPDKDFGQLVSDNIFIYKPARMGNGAETQGVPEILAKWEISDVSQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +  L GD++DNIPGIPGIG KTA  L+Q++G++E I+ N+ ++K  K +EN+  +AE
Sbjct: 178 VIDILGLWGDAVDNIPGIPGIGEKTAKKLVQDFGSVEGIIANSDKLK-GKMKENVENFAE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS++L  ++ DVPI    + L+LED N   L      LEF  L  RV          
Sbjct: 237 QGLLSKRLATIQLDVPIEFDEKSLLLEDPNKEVLEPLFAELEFRTLGKRVFGE------- 289

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                 D +  +  G        ++T+ +   FS+ ++ T+       PQ+   E L  +
Sbjct: 290 ------DFSVADATG--------KNTSGQMDLFSTATNDTA-------PQQ---EELPPV 325

Query: 359 SQYPINNDSYTKI-VNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLD 415
           +   I+N ++  I V++ + QQ + K E     SF   T+T  +DA  +  + +      
Sbjct: 326 ASNNIDNTAHEYILVDSSEAQQKLAK-ELAAQKSFCFDTETTGLDALVADIVGL------ 378

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                SF +E      + +     + +  L  EI++  K   E+    KIG NIKYD L+
Sbjct: 379 -----SFAIEK---GKAYYVPTPDSREQAL--EIINIFKPILEDPAIQKIGQNIKYDILL 428

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPI 530
           L RY + ++G   D ML  Y++D   + H +  +A+ +L Y    I K      K    +
Sbjct: 429 LSRYDVKVKGALFDTMLAHYLIDP-DTRHGMDVLAENYLGYIPVSITKLIGEKGKKQGNM 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    ++E+A E++++ LQL     P L     L + + ++ P++ V+S++E  G++I
Sbjct: 488 RDVEIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKI 547

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D D+L   S  I +++ +LE +IY+ +G KFN++SPKQLG++LF KL+  P   KTKTGQ
Sbjct: 548 DVDVLSVFSKTIEEDVRNLEASIYEKAGVKFNIASPKQLGEVLFDKLQLDPKAKKTKTGQ 607

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +K T +D+       + I+++IL++RQL K+KSTY D+LP+ IN  T  +HT Y+ A   
Sbjct: 608 YK-TGEDVLLTLANKSDIVQDILDFRQLQKLKSTYVDALPSLINPNTGLIHTSYNQAVAA 666

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+++R+AFI      +I SADYSQIELR++A +++   + 
Sbjct: 667 TGRLSSTNPNLQNIPIRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANML 726

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+   DIHR  AA+++G+ +++VS   RR+AK +NF IIYG S F L+  L IPR EA
Sbjct: 727 EAFQKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREA 786

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           AD I +YF ++ GI +Y+ K     ++NG+VETI  RR +  +INS   ++R   ER AI
Sbjct: 787 ADIIDQYFQQYSGIRDYMSKAIASAKENGFVETILKRRRYLRDINSANMTVRGFAERNAI 846

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAAD+ + AM+ + + +E+ +LA KM++Q+HDELVF+VP +E+     +I + M
Sbjct: 847 NAPIQGSAADMIKVAMLRIQEDIEEQQLAGKMIMQVHDELVFDVPLDEVEKFKTLIQNRM 906

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           + A    I ++VP++V I    NW E
Sbjct: 907 KTA----IPMQVPIEVEIGQGKNWLE 928


>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
 gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
          Length = 911

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 366/986 (37%), Positives = 534/986 (54%), Gaps = 89/986 (9%)

Query: 1   MQKENH---LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
           M KEN    + LVDGSS+++RA++   L   R   G P  AI G  +ML KL    +K+ 
Sbjct: 1   MSKENRSAPVVLVDGSSYLFRAYHVPNLKELRNSKGQPTGAIRGVISMLRKL----QKDY 56

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             S    +FD     FR+E+Y DYKANRP +PE L  Q+  +    +A G+P + I+G E
Sbjct: 57  PESQVVAVFDAKGKNFRHEMYSDYKANRPPMPEDLACQIEPLYDIVRAMGLPLLIIEGVE 116

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T  + A  +G    I + DKD+ QLVSP   L +T+ +  +D E V++K+G+PP
Sbjct: 117 ADDVIGTLAHEATTKGLDAVISTGDKDMAQLVSPHVTLVNTMTDTTMDREGVVEKFGVPP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E +V   AL GD++DNIPG+   G KTA   L E+G+L  ++  A  +K  K  EN+   
Sbjct: 177 ELIVDYLALIGDTVDNIPGVNKCGPKTAVKWLGEFGSLAQVIAQADEVK-GKIGENLRSS 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E   LS++L  ++TDV +   LE +     +   L  +   LEF   I       D DA
Sbjct: 236 LEQLPLSKELATIKTDVELPFTLEEVHPNPVDTEALHKWFTELEFRTWIK------DLDA 289

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           +   P       TE      +++ +RD  + T Q     DQ                   
Sbjct: 290 STSSPTA----ATEASAPPAQSD-ERDYQVVTEQ-----DQ------------------- 320

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                                  W++ L    + SF   T +++   ++ + +       
Sbjct: 321 --------------------FDHWIKALTDAKTFSFDTETTSLNYMEAEIVGV------- 353

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
               SF VE       V  + D  G  +     ++L+ LK   E+  + KIG N+KYD  
Sbjct: 354 ----SFAVEPGKAAY-VPVAHDYMGAPEQLERDKVLAALKPLLEDPAYRKIGQNLKYDAH 408

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
           VL  +G+ + G  ED ML SYVL+S  + HD+ ++A K L       ++I       +  
Sbjct: 409 VLANHGVQLNGIAEDTMLESYVLNSTANRHDMDTLASKHLGRETIHFEDIAGKGAKQLTF 468

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++IS  Q   +A E++++ LQL   L PKL  E +L  VY  ++ P++ V+ +ME  G  
Sbjct: 469 NQISLEQAGPYAAEDADITLQLHHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGAL 528

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D   L+  S E+++ +L LEE  Y+ +G+KFNL SPKQL +I + KL F    KT  GQ
Sbjct: 529 VDSQRLRTHSQELAERMLELEEEAYEKAGQKFNLGSPKQLQEIFYEKLGFDIIKKTPKGQ 588

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +TA+ + Q       + + +LE+R LSK+KSTY D LP  IN RT RVHT Y  A   
Sbjct: 589 -PSTAEPVLQELAEKYELPRVLLEYRGLSKLKSTYTDKLPEMINPRTGRVHTSYQQAVAA 647

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++ + G++IR+AFI+P   KLISADYSQIELRI+AH++    L +
Sbjct: 648 TGRLSSSDPNLQNIPVRNEQGRRIRQAFIAPKGCKLISADYSQIELRIMAHLSGDEGLLK 707

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F   LD+H+  AAE+F V  ++VS + RR AK INF +IYG+S F LA Q+ + RSEA 
Sbjct: 708 AFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAINFGLIYGMSAFGLARQIHVERSEAQ 767

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI +YF R+PG+  Y+ + +   +  GYVET+FGRR++  +I S   +++   ER AIN
Sbjct: 768 SYIDKYFERYPGVLNYMNRIRAEAQDTGYVETLFGRRLYLPDIRSSNRNLQQAAERTAIN 827

Query: 890 APIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           AP+QG+AADI +RAM++V   LE D     KM++Q+HDEL+ EV E  +    + +   M
Sbjct: 828 APMQGTAADIIKRAMLAVDAWLEGDSAPPAKMIMQVHDELILEVEESAVEAVKEKLTQIM 887

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
             A     +L VPL V   V NNW E
Sbjct: 888 SSAA----DLNVPLLVEAGVGNNWDE 909


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 366/983 (37%), Positives = 541/983 (55%), Gaps = 72/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLMQYQP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVEAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE  G  V I + DKD+ QLV+P   L +T+    +  + V  K+G+PP  ++   
Sbjct: 121 LARRAELAGRHVLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVCDKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPG+PG+G KTA  LLQ  G+L+ I  +  R+         L +     + 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGIGSLKTIYDDLDRVA-------TLSFRGAKTMG 233

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            KL++ +              E  +   L++ +K          V    DCD   I+P  
Sbjct: 234 AKLLLNK--------------EKADLSYLLATIK--------TDVDLAQDCDDLAIKP-- 269

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS---- 359
           LD  T     +    E  R        + + + + S +   +  +K  +E+         
Sbjct: 270 LDSETLHR--LFSRYEFKR--------WLTDAQEGSWLTGAKGGRKTRVEKSADAPAAPA 319

Query: 360 ---QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 +  + Y  I++   ++  + +L   G  +F   TD++D   +    + IS  D 
Sbjct: 320 SEVSVTLTREGYQTILDEAALEALIARLRQAGCFAFDTETDSLDVLSAN--LVGISCADA 377

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                   +  +I L+ H   D+  +    + +L+ L+   E+E   KIG N+KYD  V+
Sbjct: 378 PG------QACYIPLA-HDYLDAP-RQLDRQYVLARLQPLLEDEGVAKIGQNLKYDIGVM 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            RYGI++RG   D ML SYVL+S    HD+ S+A + L +   T +EI    K  +  ++
Sbjct: 430 ARYGITLRGVAFDTMLESYVLNSVAGRHDMDSLAARHLDHKTITFEEIAGKGKGQLTFNQ 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQID 591
           I   Q  E+A E+++V LQL   L P L  E    H++  +D P+I V+S+ME TG+ ID
Sbjct: 490 IPLEQAAEYAAEDADVTLQLHQRLWPTLEGESGPSHIFRDIDMPLIPVLSRMERTGVLID 549

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L Q S E++  L +LE+  +  +GE FNLSS KQL  ILF K + P   KT  G   
Sbjct: 550 SAILGQHSQELAVRLEALEQQAHSEAGEPFNLSSTKQLQAILFEKQQLPVLKKTPGGAPS 609

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++      + + ILE+R L+K+KSTY D LP  +N  T RVHT Y  A T TG
Sbjct: 610 TNEEVLAELADQGYALPQVILEYRTLAKLKSTYTDKLPQMVNPLTGRVHTSYHQAVTATG 669

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP+++D G++IR+AFI+P   ++++ADYSQIELRI+AH++    L   F
Sbjct: 670 RLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSRIVAADYSQIELRIMAHLSGDKGLLAAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAE+FG+ +E VS   RR AK INF +IYG+S F LA QL I R EA  Y
Sbjct: 730 AAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRY 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+  Y+E+T+      GYVET+ GRR++  EIN+     R   ERAAINAP
Sbjct: 790 MDLYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYLPEINARNGMRRKAAERAAINAP 849

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI+V   L++ +   +M++Q+HDELVFEVPE ++      +   ME +
Sbjct: 850 MQGTAADIIKRAMIAVDGWLQEAQPEVRMIMQVHDELVFEVPESQVEAVVCQVRALMENS 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               ++L VPLKV+I    NW +
Sbjct: 910 ----LSLAVPLKVDIGCGENWDQ 928


>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 917

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 353/978 (36%), Positives = 542/978 (55%), Gaps = 83/978 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R  +G P  AI G  NML +L ++      A + A +FD
Sbjct: 11  LLLVDGSSYLYRAFHAMPDL-RGPEGAPTGAIYGMINMLRRLRKDYPD---AEYMACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y +YKA R  +P+ L+ Q+  +  A +A G P + + G EADD+IAT   
Sbjct: 67  AKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAV 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V    L 
Sbjct: 127 AAVGHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTLV 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTA   L +YG L+ I+ +A+ IK     EN+    +    ++ L
Sbjct: 187 GDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIK-GVVGENLRRALDWLPQAKVL 245

Query: 247 VMLRTDVPIT-----IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           + ++TD  ++     IP E L  +  +   +++F K   F   +                
Sbjct: 246 ITVKTDCDLSAHMTEIP-ESLTQKTEDIEAMVAFFKRNGFKSWL---------------- 288

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                               R+ T KT   +S +     +  E TP+   +E+       
Sbjct: 289 --------------------RELTEKTEMPASATAPQGALFGEDTPE---VEK------- 318

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  +    ++ +W+QK+      +    T +++   ++ + I++   +      
Sbjct: 319 -----HYETVWTEANLDRWLQKINAAELTAIDTETTSLEPMQAQLVGISLCC-EPGVAAY 372

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   + D+ +  S+ S         +L  L+ + E++   K+G N+KYD  +   +G+
Sbjct: 373 IPVAHRYQDVPLQLSRAS---------VLEKLRSWLEDDSKPKVGQNLKYDSHIFANHGV 423

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537
           ++RG   D +L SYV +S RS HD+ S+A + L   + T +++     S +  D++  ++
Sbjct: 424 TLRGIVHDTLLQSYVFESHRS-HDMDSLALRHLNRKTMTFQDVCGKGASQLCFDQVDIAR 482

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             E+A E++++ LQL   + P +  +  L  VYE+++ P   V+ ++E  G+ ID  LL 
Sbjct: 483 ATEYAAEDADITLQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLA 542

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E+ K +L +E+  Y+L+G+ FNL SPKQ+G+I F K+K P   KT +G   T  + 
Sbjct: 543 TQSHELGKRMLEIEQQAYELAGQPFNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEV 602

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L+++   D P+ K +LE+R LSK+KSTY D LP  I+  T RVHT Y+ A  +TGRL+S 
Sbjct: 603 LQKL-AEDYPLPKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVAVTGRLSSN 661

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+   G++IR AFI+PP   ++SADYSQIELRI+AHI++   + + F    D
Sbjct: 662 DPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGED 721

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAEIFGV    VS + RR+AK INF +IYG+S F LA  L I R+ A  YI++YF
Sbjct: 722 IHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQSYIEKYF 781

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
           +RF G+  Y++ T+   +  GYV+T+FGRR+   EINSP    R   ERAAINAP+QG+A
Sbjct: 782 YRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGTA 841

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI+V   LE  KL TKM++Q+HDELV EVPE E+      +   M        
Sbjct: 842 ADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPELMRNVA---- 897

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L+VPL   + V  NW E
Sbjct: 898 QLKVPLIAEVGVGKNWDE 915


>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
 gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
          Length = 932

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 354/984 (35%), Positives = 544/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NA+ G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVINMVRAMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+YP+YKA RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELYPEYKAQRPPMPDDLRCQIEPLHNVIRAMGLPLLSIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             + A + G  V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   
Sbjct: 121 LAHQASQAGIPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N  +I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTALYDNLDKIADLGFRGSKTMAKKLEDNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS +L  ++ DV +    E L+    +   LI     L F   +N +         
Sbjct: 241 ANAELSYELATIKLDVALDCTPETLLKATPDRDALIELYGQLSFKSWLNEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQ 356
            +E     +   E    ++             Q + ++D  + KI+  Q           
Sbjct: 292 -LEGGTGVVEAAEKSAASVAVS-------GAPQAAPMADSAAVKIDRSQ----------- 332

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  IV+     +W+ KL +    +F   TD++D   +  + ++ + + +
Sbjct: 333 -----------YETIVDEAAFNRWLDKLRSAEVFAFDTETDSLDYMVANLVGVSFA-VAE 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     V   ++D      +D          +L+ LK   E+    K+G N+KYD  +L
Sbjct: 381 GEAAYVPVAHDYLDAPQQLDRDW---------VLAQLKPILEDAQQAKVGQNLKYDASIL 431

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            RY I+M+G   D ML SYV +S    HD+ S+A +++ ++    +++    K+ +  ++
Sbjct: 432 ARYDINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQHSCISFEQVAGKGKNQLTFNQ 491

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           I   Q   +A E+++V L+L   L P L  + KLL VY  ++ P++ V+S++E TG+ I+
Sbjct: 492 IDLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYRDIEMPLVPVLSRIERTGVLIN 551

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LL   S EI++ L  LE+  +D++G++FNLSSPKQL  I F ++K P   KT +G   
Sbjct: 552 DMLLGAQSQEIAQRLDELEKKAFDIAGQEFNLSSPKQLQTIFFDQMKLPVIKKTPSGTPS 611

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+++   D P+   ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TG
Sbjct: 612 TNEEVLQELAL-DYPLPAVILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATG 670

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L + F
Sbjct: 671 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAF 730

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +   DIH   AAEI G++I++V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y
Sbjct: 731 QQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAY 790

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ +Y+E T++   + GYVET+FGRR+H  EI S     R   ERAAINAP
Sbjct: 791 MDTYFERYPGVMQYMEDTRSTAAEQGYVETLFGRRLHLPEITSRNGMRRKAAERAAINAP 850

Query: 892 IQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI ++AM+ V   +E       K+L+Q+HDELVFEV E  ++     +   ME 
Sbjct: 851 MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESALSEIESKVQKLMES 910

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L+VPL       +NW E
Sbjct: 911 AA----ALKVPLVAEAGHGDNWDE 930


>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
 gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
          Length = 930

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 361/980 (36%), Positives = 542/980 (55%), Gaps = 74/980 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAFYA   LS   DG P NA+ G  NML +L    R E+   + A +FD
Sbjct: 11  LLLVDGSSYLYRAFYAMTHLSAP-DGTPTNAVYGVLNMLRRL----RAETPHDYCACVFD 65

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ ++PDYKA RP +P+ L PQ  ++    +  G   ++I   EADD+I T   
Sbjct: 66  AKGKNFRHALFPDYKATRPPMPDDLRPQADMLPDLVELMGWKVLKISDVEADDVIGTLAK 125

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE     V I + DKD+ QLVS    L +T+K E +D   V  K+G+ P ++    AL 
Sbjct: 126 QAESADMNVIISTGDKDMAQLVSERITLVNTMKNETLDEAGVFNKFGVHPNQIRDFLALM 185

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD +DN+PG+   G KTAA  L E+G+L+NI+  A   K  K  EN+        LS +L
Sbjct: 186 GDKVDNVPGVEKCGEKTAAKWLAEFGSLQNIMNKADEFK-GKIGENLRAALPQLPLSYEL 244

Query: 247 VMLRTDVPITIPLEHLILEDC--NGPR---LISFLKALEFTKLINRVATTYDCDAANIEP 301
           V ++TDV +   L +  ++D   N P+   L    + L F   +           ++   
Sbjct: 245 VTIKTDVDLFSELPN-GMDDLRRNAPKWAQLAVHFRELGFKTWLKEAENQLSSQVSD--- 300

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
              D+   ++ G                         +  ++++ P+ +   + +KLS  
Sbjct: 301 ---DLFAADDVGT-----------------------QAAFDAQRQPEIILAPKPEKLS-- 332

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  ++N   + + ++KL T         T ++D  +++ + I+++         
Sbjct: 333 ------YQAVINQTQLDELLRKLSTAEQIGLDTETTSLDPMNARLVGISMA--------- 377

Query: 422 FKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           F   E ++I ++   ++      TL    L  LK + E++  LKIG N+KYD+ V   +G
Sbjct: 378 FAAGEAVYIPINHTFAEQQLSWETL----LGSLKPYLESKTLLKIGQNLKYDQHVFANHG 433

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
           I ++G   D ML SYVL+S    H +  +AQ+WL   + T + +       I    +S  
Sbjct: 434 IQLQGIAGDAMLASYVLES-HLGHGLDELAQRWLGLETITYESLCGKGAKQISFADVSVE 492

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           Q  E+A ++++  L++   L+ ++  E+   +YE ++ P+  V+  ME  G+ ID+  L 
Sbjct: 493 QATEYACQDADFALRIEAHLKAQMSDEQR-KMYEEMELPVAQVLFHMERNGVLIDRAELA 551

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTA 654
           Q SAE+   LL LE+  YDL+G+ FNL+SPKQL +ILFTKL  P+    KT TG   T  
Sbjct: 552 QQSAELGAELLKLEQQAYDLAGQPFNLNSPKQLQEILFTKLGIPTKGLKKTSTGSISTNE 611

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LEQ+   D P+ K IL+ R L+K+KSTY D LP  IN  T R+HT Y+ A  +TGRLA
Sbjct: 612 AVLEQLAM-DYPLPKIILQNRSLAKLKSTYTDKLPEMINPNTHRIHTNYAQAVAITGRLA 670

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPI+T  G+++RRAFI+P    ++SADYSQIELRI+AH++    L + F+N 
Sbjct: 671 SNNPNLQNIPIRTSEGRRVRRAFIAPENSVIVSADYSQIELRIMAHLSGDATLIEAFKNG 730

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+HR  AAE+FG+  E ++P+ RR+AKTINF +IYG+S + LA  L I  + A  +IKR
Sbjct: 731 EDVHRRTAAEVFGMQPENITPEQRRYAKTINFGLIYGMSSYGLAKSLGIDNASADMFIKR 790

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+ G+ +Y+++TK      GYVET+FGRR++  +I++  +  R   ERAAINAP+QG
Sbjct: 791 YFARYTGVADYMQRTKEQAADLGYVETLFGRRLYLPDIHAKNAQARAGAERAAINAPMQG 850

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +A+D+ +RAMI+V   L    L T++ +Q+HDELV EVP+ E     Q I   M  A + 
Sbjct: 851 TASDLIKRAMIAVDDFLLSGSLKTRLTMQVHDELVLEVPKSEQERIVQNIPALM--ASVG 908

Query: 955 KINLRVPLKVNIKVSNNWQE 974
           K  L VPL   + +  NW +
Sbjct: 909 KGVLDVPLVAEVGIGKNWDD 928


>gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 911

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 353/978 (36%), Positives = 542/978 (55%), Gaps = 83/978 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R  +G P  AI G  NML +L ++      A + A +FD
Sbjct: 5   LLLVDGSSYLYRAFHAMPDL-RGPEGAPTGAIYGMINMLRRLRKDYPD---AEYMACVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y +YKA R  +P+ L+ Q+  +  A +A G P + + G EADD+IAT   
Sbjct: 61  AKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAV 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V    L 
Sbjct: 121 AAVGHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTLV 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTA   L +YG L+ I+ +A+ IK     EN+    +    ++ L
Sbjct: 181 GDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIK-GVVGENLRRALDWLPQAKVL 239

Query: 247 VMLRTDVPIT-----IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           + ++TD  ++     IP E L  +  +   +++F K   F   +                
Sbjct: 240 ITVKTDCDLSAHMTEIP-ESLTQKTEDIEAMVAFFKRNGFKSWL---------------- 282

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                               R+ T KT   +S +     +  E TP+   +E+       
Sbjct: 283 --------------------RELTEKTEMPASATAPQGALFGEDTPE---VEK------- 312

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  +    ++ +W+QK+      +    T +++   ++ + I++   +      
Sbjct: 313 -----HYETVWTEANLDRWLQKINAAELTAIDTETTSLEPMQAQLVGISLCC-EPGVAAY 366

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   + D+ +  S+ S         +L  L+ + E++   K+G N+KYD  +   +G+
Sbjct: 367 IPVAHRYQDVPLQLSRAS---------VLEKLRSWLEDDSKPKVGQNLKYDSHIFANHGV 417

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537
           ++RG   D +L SYV +S RS HD+ S+A + L   + T +++     S +  D++  ++
Sbjct: 418 TLRGIVHDTLLQSYVFESHRS-HDMDSLALRHLNRKTMTFQDVCGKGASQLCFDQVDIAR 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             E+A E++++ LQL   + P +  +  L  VYE+++ P   V+ ++E  G+ ID  LL 
Sbjct: 477 ATEYAAEDADITLQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLA 536

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E+ K +L +E+  Y+L+G+ FNL SPKQ+G+I F K+K P   KT +G   T  + 
Sbjct: 537 TQSHELGKRMLEIEQQAYELAGQPFNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEV 596

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L+++   D P+ K +LE+R LSK+KSTY D LP  I+  T RVHT Y+ A  +TGRL+S 
Sbjct: 597 LQKL-AEDYPLPKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVAVTGRLSSN 655

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+   G++IR AFI+PP   ++SADYSQIELRI+AHI++   + + F    D
Sbjct: 656 DPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGED 715

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAEIFGV    VS + RR+AK INF +IYG+S F LA  L I R+ A  YI++YF
Sbjct: 716 IHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQSYIEKYF 775

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
           +RF G+  Y++ T+   +  GYV+T+FGRR+   EINSP    R   ERAAINAP+QG+A
Sbjct: 776 YRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGTA 835

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI+V   LE  KL TKM++Q+HDELV EVPE E+      +   M        
Sbjct: 836 ADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPELMRNVA---- 891

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L+VPL   + V  NW E
Sbjct: 892 QLKVPLIAEVGVGKNWDE 909


>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
 gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
          Length = 913

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 355/975 (36%), Positives = 556/975 (57%), Gaps = 75/975 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  +G P  AI GF NML +L     K+   ++ A IFD
Sbjct: 5   LLLVDGSSYLYRAYHALPDL-RNAEGEPTGAIYGFLNMLHRL----EKDYPTAYVACIFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN++Y +YKANR  +P+ L  Q   +    +  G P + I+G EADD+I T   
Sbjct: 60  AKGKTFRNDLYQEYKANRSAMPDDLARQTGPIHELVKMLGWPILSIEGIEADDVIGTLVS 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           IA+++GF   + + DKD+ QLV     L +T+  E +D E V++K+G+PP+++V   +L 
Sbjct: 120 IAKRKGFDTVVSTGDKDMSQLVRDCVTLVNTMNNEIMDEEGVMRKFGVPPDRIVDYLSLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+  +G KTA   L +YG+L+ I+ NA  IK     +N+ E  E    +R+L
Sbjct: 180 GDTSDNIPGVNKVGPKTAVKWLTQYGSLDAIIENAVNIK-GTVGDNLRESLEWLPQARQL 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           + +RT              DC+   L    K++E T                     L  
Sbjct: 239 ITIRT--------------DCD---LSGQFKSIEET---------------------LVK 260

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK--LFLERLQKLSQYPIN 364
           N+ +  G+       R    +    + L +  ++   ++T  +  LF E   K  ++ + 
Sbjct: 261 NSEDVSGL-------RKAYERYGFKNWLRELNARHQEKETKGQIDLFGEPGTKPEKF-VA 312

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +  ++W+  ++     S    T ++D+  ++ + I++S         F  
Sbjct: 313 KQEYETVLTEEQFEKWLNLIDQAPLTSLDTETTSLDSMTARLVGISLSV-----KPGFAA 367

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L+ H  +    K      +L  LK + EN    K+G N+KYD  +   Y I ++
Sbjct: 368 ---YIPLAHHPIE--VAKQLPLDHVLKKLKSWLENPAKKKVGQNLKYDSHIFANYHIHLQ 422

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G   D +L SYVL+S R  HD+ S++++ L Y   + +EI     S I  D+I       
Sbjct: 423 GIAHDTLLESYVLESHRR-HDMDSLSERLLDYKPISYEEICGKGASQIGFDQIELDCATR 481

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  QL   + P++   E L  +YE+++ P+  V+ +ME  G+ ID DLL   S
Sbjct: 482 YAAEDADITFQLHENMWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLGQS 541

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           +E++  +  LE+  Y ++ + FNL+SPKQL +ILF KL  P   KT +G   T+ + LE+
Sbjct: 542 SELALKIDELEKKAYSVAEQSFNLNSPKQLAEILFDKLGLPLVKKTPSGAPSTSEEVLEK 601

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D P+ K IL++R ++K+KSTY D LP  IN  T RVHT Y+ A  +TGRLAS +PN
Sbjct: 602 LAL-DYPLPKIILDFRGMAKLKSTYTDKLPRMINPETGRVHTNYAQAVAVTGRLASNDPN 660

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP+KT+ G++IR AFI+P    ++SADYSQIELRI+AH++    L + F    D+H+
Sbjct: 661 LQNIPVKTEEGRRIREAFIAPAGCYIVSADYSQIELRIMAHLSDDPGLLKAFREGQDVHK 720

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+EIF +   +V+P+ RR+AK INF +IYG+S F +A+ L I R++A +YI RYF R+
Sbjct: 721 ATASEIFDIAPLEVTPEQRRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFRRY 780

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ EY++  +   R+ GYVET+FGRR+   EINSP    R   ERAAINAP+QG+AADI
Sbjct: 781 PGVAEYMDAIRQTAREQGYVETVFGRRLWLPEINSPNGPRRQAAERAAINAPMQGTAADI 840

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + +MI+V+  +E+ +L +K+++Q+HDELV EVP++E+    + +   M +      +L+
Sbjct: 841 IKLSMIAVNDWIENEQLESKLIMQVHDELVLEVPDKELERVRKRLPELMGQVA----SLK 896

Query: 960 VPLKVNIKVSNNWQE 974
           VPL  ++    NW+E
Sbjct: 897 VPLIADVGFGKNWEE 911


>gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619]
 gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619]
          Length = 915

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 355/988 (35%), Positives = 537/988 (54%), Gaps = 100/988 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +  +G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAKGRPVIISTGDKDMAQLVDGHVTLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +   A R   K     + E+ +
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIR-GAKTLPAKLEEHRD 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I ++ L+  + +   L++    +EF   I             
Sbjct: 240 AAFLSYELATIKVDVPLDIEVDALVCGEPDREALLALYTEMEFKSWI------------- 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               ++ RD      + + L    +K+  +              
Sbjct: 287 -------------------ADVQRDAARAGDEVAPLEAPAAKVEPK-------------- 313

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I++      W++KL      +F   T ++DA  ++ + +         
Sbjct: 314 ---------YETILDQARFDAWLEKLRQAPLFAFDTETTSLDAQKAQLVGL--------- 355

Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNT-LTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
             SF VE     ++ L+     D  G    L +E +L  LK   ++    K+G N KYD 
Sbjct: 356 --SFAVEPHEAAYVPLA----HDYEGAPVQLDREAVLLALKPLLQDPAKEKVGQNAKYDI 409

Query: 474 LVLHRY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527
            +L      I M+G   D ML SYVL+S  + HD+ S+AQK+L +     ++I       
Sbjct: 410 NILANGSPAIQMQGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHATIAFEDIAGKGAKQ 469

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEIT 586
           +  ++I   +   +A E++++ L+L   L+ +L     +L V   ++ P++ V++++E  
Sbjct: 470 LTFNQIHLDKAGPYAAEDADITLRLHQALQARLAQTPSVLPVLMDIEMPLVPVLAKIERQ 529

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G  +D  LL+  S E+   +  LE   Y+L+GE+FNL SPKQLG IL+ KL  P  +KT 
Sbjct: 530 GALVDAALLQIQSGELGVKMADLERRAYELAGEEFNLGSPKQLGSILYDKLGMPVLSKTA 589

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            GQ  T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A
Sbjct: 590 KGQPSTAEAVLDELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQA 649

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   
Sbjct: 650 VAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEG 709

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F N+LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R 
Sbjct: 710 LLHAFRNNLDVHRATAAEVFGVALEAVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRK 769

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           ++ DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER 
Sbjct: 770 QSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERT 829

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AADI +RAM++V   L +  L  +++LQ+HDELV EV E+ +      I  
Sbjct: 830 AINAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVDQVKDEIRG 889

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M KA      L VPL V + V +NW E
Sbjct: 890 QMSKAA----QLDVPLLVEVGVGSNWDE 913


>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
 gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 349/979 (35%), Positives = 546/979 (55%), Gaps = 66/979 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQK   L LVDGSS++YRAF+A P + R  +G P  A+ G  NML +L    R +  AS+
Sbjct: 1   MQKT--LLLVDGSSYLYRAFHALPDM-RNAEGAPTGALYGIINMLRRL----RNDYPASY 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+++YPDYKA R  +PE L  Q+  +  A +A G P + ++G EADD+
Sbjct: 54  VACVFDAKGKTFRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDV 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T +  A   G    + + DKD+ QLV+    L +T+  E +DI  V  K+G+PPE++V
Sbjct: 114 IGTLSVQATAAGLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIV 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              +L GD++DN+PG+   G KTA   L  YG L+ ++ NA +I      EN+    +  
Sbjct: 174 DYLSLIGDTVDNVPGVEKCGPKTAVKWLTAYGTLDGVMANADKIS-GVVGENLRRALDWL 232

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              R LV ++TD  ++  +  ++      P+    LK L FT+   R       D A   
Sbjct: 233 PQGRVLVTVKTDCDLSAHMSSILESLTMQPQDKDVLKEL-FTRYNFRTWLRELSDGA--- 288

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
               +   ++   +        +   +   F++      K+  E                
Sbjct: 289 ----EAGASKAPMVGASAAAALEAPAQGGLFAA----APKVEYE---------------- 324

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     ++    + QW+  +      +    T +++A  ++ + I++     +   
Sbjct: 325 ---------TVLTDAQLDQWIATINAAELTAVDTETTSLEAMQAELVGISLCCEPGR--- 372

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I ++ H  QD+  + +  + +L  LK + E+    K+G ++KYD  +   YG
Sbjct: 373 -----AAYIPVA-HNYQDAPVQLS-RQHVLEKLKPWLEDASKPKLGQHLKYDSHIFANYG 425

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
           + + G + D +L SYV +S R  HD+ S+A + L   + T  E+     S I  ++++  
Sbjct: 426 VRLAGVKHDTLLESYVFESHR-PHDMDSLAARHLERKTITYAEVCGKGASQIGFNEVAIE 484

Query: 537 QVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +  E+A E++ V L L   + P++   +KL  +YE+++ P   V+ ++E  G+ ID + L
Sbjct: 485 RATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERL 544

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            Q S ++ K +L +E+  YDL+G+ FNL+SPKQLG+ILF KL+ P   KT +G   T  +
Sbjct: 545 GQQSHDLGKRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTASGAPSTDEE 604

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++   D P+ K +L++R L+K+KSTY D LP  +N  T RVHT Y+ A  +TGRL+S
Sbjct: 605 VLQKL-AEDYPLPKVLLDYRGLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVAVTGRLSS 663

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T  G++IR AF++P    ++SADYSQIELRI+AHI++   + + F N+ 
Sbjct: 664 NDPNLQNIPIRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFANNE 723

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAEIFG+  E+V  + RR+AK INF +IYG+S F LA+ L I R+ A  YI +Y
Sbjct: 724 DIHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLASNLGIERAAAQMYIDKY 783

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+  Y+++T+   +  GYVET+FGRR+   EINSP    R   ERAAINAP+QG+
Sbjct: 784 FMRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGT 843

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI+V   LE + L T+M++Q+HDELV EVP++E+    + +   M+      
Sbjct: 844 AADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEMVREKLPELMKNVA--- 900

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L+VPL   + +  NW E
Sbjct: 901 -ELKVPLLAEVGIGKNWDE 918


>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
 gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
          Length = 928

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 361/983 (36%), Positives = 540/983 (54%), Gaps = 74/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    E IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQKGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAGLGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    E L+  + N   L+     L F   +N +    +  + 
Sbjct: 241 ENAMLSYELATIKLDVELEETPESLLKAEPNKDELVKLYGQLTFKSWLNEL---LEGGSG 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++E V L                        +  S    +TS +                
Sbjct: 298 SVEAVEL-------------------AGSSQASSSQAEMETSAVT--------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I++ +    W+ KL+T    +F   TD +D   +  + ++ + +D+ 
Sbjct: 324 -----IDRSQYETILDKETFNAWLDKLQTAELFAFDTETDNLDYMLANLVGLSFA-VDEG 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E+    K+G N+KYD  VL 
Sbjct: 378 IAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDAAKAKVGQNLKYDASVLA 428

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           RY I ++G + D ML SY+ +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 429 RYDIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +   E L  VYE ++ P++ V+S++E TG+ ID+
Sbjct: 489 ELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDE 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 549 MKLSAQSVEITARLDELEKKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 609 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 668 LSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFR 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 728 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 788 DTYFERYPGVMQYMEDTRSTAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 848 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L+VPL       +NW +
Sbjct: 908 A----ELKVPLVAEAGHGDNWDQ 926


>gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1]
          Length = 915

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 355/987 (35%), Positives = 533/987 (54%), Gaps = 98/987 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +   G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +   A R   K     + E+ +
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPTLAIR-GAKTLPAKLEEHRD 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ + +E L+  + +   L++    +EF   +             
Sbjct: 240 AAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWV------------- 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E+ RD        +   +  +K+  +              
Sbjct: 287 -------------------AEVQRDAAKAGDDVAPAVEPAAKVEPK-------------- 313

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I++      W++KL      +F   T  +DA  ++ + +         
Sbjct: 314 ---------YETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGL--------- 355

Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
             SF VE     ++ L+ H  + +  +  L +E +L  LK   E+    K+G N KYD  
Sbjct: 356 --SFAVEPHEAAYVPLA-HDYEGAPAQ--LDREAVLLALKPLLEDPAKAKVGQNAKYDIN 410

Query: 475 VLHRY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           +L      I MRG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I       +
Sbjct: 411 ILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQL 470

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITG 587
             ++I+  +   +A E++++ L+L   L+ +L     +  V   ++ P++ V++++E  G
Sbjct: 471 TFNQINLDKAGPYAAEDADITLRLHDALQARLAQTPSVQPVLMDIEMPLVPVLARIERQG 530

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D +LLK  S E+   +  LE   Y+L+GE FNL SPKQLG IL+ KL  P  +KT  
Sbjct: 531 ALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTAK 590

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 591 GQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 650

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   L
Sbjct: 651 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R +
Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 770

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER A
Sbjct: 771 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAM+ V   L +  L  +++LQ+HDELV EV E+ +      I   
Sbjct: 831 INAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQH 890

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M +A      L VPL V   V  NW E
Sbjct: 891 MSQAA----QLDVPLLVEAGVGANWDE 913


>gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
 gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
          Length = 913

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 356/986 (36%), Positives = 539/986 (54%), Gaps = 98/986 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 61  AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENIL---INASRIKQKKRRENILE 235
           GD +DNIPG+PG+G KTA  LL          Y +L+ +    I  ++    K  EN   
Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L   +     LI+  + LEF   ++ +       
Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEA 296

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N E               I+ E+D D  +  + F +                      
Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                                   W++KLE     +F   T ++DA  ++ + ++ + + 
Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           + +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L ++    ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L++  L  +++LQ+HDELV EV E+ +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVCEGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
             A      L VPL V   V +NW E
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 362/987 (36%), Positives = 568/987 (57%), Gaps = 64/987 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           ++  LFL+D  + I+R +YA    P L+ K  GL  +AI GF N L +L++  +     +
Sbjct: 5   QDKRLFLIDAYAMIFRGYYALIRNPRLTSK--GLDTSAIFGFTNSLIELIRREK----PT 58

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD    + R + + DYKANR + PE +   +P +    +A  IP + ++G+EADD
Sbjct: 59  HLAVVFDVGQASVRTDDFSDYKANRSETPEAIKIAVPYIHRILEAMHIPILGVEGYEADD 118

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDI---EHVIKKWGIP 175
           +I T    AEKEG+   +++ DKD  QLV+    +Y   +K   I+I   E V  K+ I 
Sbjct: 119 VIGTIACKAEKEGYTTYMVTPDKDFAQLVTDKIKIYKPGLKGGDIEILGVEEVKAKYEIE 178

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++++   A+ GD++DNIPG+ G+G KTA   L+E+G +EN+L N  ++K  K +E + 
Sbjct: 179 DPKQVIDFLAMMGDAVDNIPGLEGVGEKTAMKFLKEFGTIENLLANTDKLK-GKLKEKVE 237

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
             AE   LS+KL  +  D P+    E   LE  +  ++      +EF +L   +   +  
Sbjct: 238 ASAERGILSKKLATIICDAPVEFHQEQYDLETPDFEKVKEVFDEIEFRRLYENLYRAFA- 296

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
             A  E +V  ++  E K     TE+ +   ++   F++  +     +++ T     +E 
Sbjct: 297 -PAPAETIV--VSEVEVKQTPAGTEV-KGQVMQLDLFANFEELEQATSTKST-----IEH 347

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
              L Q+ INN    K +    +QQ V          F   T +++   ++ + ++ S  
Sbjct: 348 NDHLYQF-INNPKAQKKLVDNLLQQKV--------VCFDTETTSLNELEAELVGMSFSY- 397

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K   ++     +I LS   ++          + L   + FFE E  LK+ HN+K+D  
Sbjct: 398 --KKGLAY-----YIPLSEDRAE--------VLQTLEIFRPFFEKEDLLKVAHNLKFDYK 442

Query: 475 VLHRYGISMRG-FEDIMLMSYVLD-SGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           VL +Y I+++G   D M+  Y+L+  GR  H +  +++ +L+Y   + + I+  +     
Sbjct: 443 VLKQYDITVKGAMFDTMIAHYLLNPDGR--HGMDYLSEVYLNYKPVSIETIIGKKGKKQG 500

Query: 530 IDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             + +D + Q ++A E+++V  QL+ L  P+L  E L  ++  ++ P+++V+++ME++GI
Sbjct: 501 NFRDADLRTQTDYAAEDADVTFQLYELFAPQLKKENLEELFYNIEMPLMEVLAKMELSGI 560

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
            +D+  L Q S ++  +L  LE  I++LSGE+FN++SP+QLG+ILF K++  P   KTKT
Sbjct: 561 SLDEKWLAQESVDLENDLKGLEAKIFELSGEEFNMNSPRQLGEILFEKMQLDPKAKKTKT 620

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+  T++D+ Q     + IIK+ILE+R   K+KSTY D+LP+ I+K   RVHT +S  +
Sbjct: 621 GQY-ATSEDVLQKLSSKHEIIKHILEYRTYQKLKSTYVDALPSQIDKDDNRVHTNFSQTT 679

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRLAS+ PNLQNIPI+T  GQ+IR AF+S   KK+ISADYSQIELR++A I+    +
Sbjct: 680 AATGRLASVNPNLQNIPIRTLRGQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENM 739

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F++  DIH   AA++F + + +VS   R  AKT+NF IIYG   F LA Q  + R+E
Sbjct: 740 IKAFQDGEDIHASTAAKLFKIPLAEVSKTQRSQAKTVNFGIIYGQGAFALAEQTGLSRTE 799

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A   I+ YF  +P + EY+ +  N  RQ GYVETI GR+ H  +INS    +R   ER A
Sbjct: 800 AKQMIEAYFETYPKLKEYMAEQVNKARQLGYVETILGRKRHLKDINSNNFVVRGHAERNA 859

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAP+QGSAADI + AMI + + LE+ +L TKMLLQ+HDELVFE P +EI +AS +I   
Sbjct: 860 VNAPVQGSAADIVKIAMIKIDRELEEQQLKTKMLLQVHDELVFEAPADEIESASHLIRTE 919

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A    +  +VPL V I V +NW E
Sbjct: 920 MENA----LKTQVPLLVEIGVGDNWLE 942


>gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12]
 gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 923

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 353/980 (36%), Positives = 535/980 (54%), Gaps = 70/980 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+         + A + D
Sbjct: 4   LVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVID 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+ +  +YK +RP +P+ L  Q+  +     A GI  + I G EADD+I T   
Sbjct: 58  APGKTFRDALDSEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIHGVEADDVIGTLAL 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQAL 185
            A  +G AVTI + DKD  QLV P   L +T+   ++D    VI K+G+ P++++   AL
Sbjct: 118 AAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLAL 177

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG+   G KTAA  L EYG+L+ ++ NA +IK K   +N+        L+R 
Sbjct: 178 MGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIG-DNLRVVLPRLLLNRA 236

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L+ ++TDV +    + L L + +   L  F +   FT+ +       + D  ++   V +
Sbjct: 237 LITIKTDVVLEKRPQDLALRERDTEALRDFYQRYGFTQALK------ELDGGSVAVTVAE 290

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 +        D    ++ +   S   +                            
Sbjct: 291 QEPGRGRDAGFHVAPDASVAMEINPALSAPGE---------------------------- 322

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  I   + +Q W+ +L   G  +    TD++D   +  I +           SF  E
Sbjct: 323 --YETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGL-----------SFASE 369

Query: 426 TIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +     +    D  G          L+ L+   E+    K+G + KYD  VL RYGI +
Sbjct: 370 -VGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVL 428

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRK--EILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL SG + HD+ ++A++ L Y T K  +++      IP   +   +  
Sbjct: 429 AGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEAT 488

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A E++++ L+L  +L PKL+ E +L  VY  ++ P++ V+ ++E  G+QID + L + 
Sbjct: 489 QYAAEDADITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQ 548

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++S+ ++  ++   DL+G  FNL SPKQL  +LF +LK P   KT  GQ  T  + LE
Sbjct: 549 SADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALE 608

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            I    + + + ILE+R L+K+++TY + LP  I+  T RVHT Y  A   TGRL+S +P
Sbjct: 609 AI-VDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDP 667

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+TD G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+ +D+H
Sbjct: 668 NLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVH 727

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             +AAE+FG  I++V+P  RR AK INF +IYG+S F LA QL I R EA DYI  YF R
Sbjct: 728 CAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDR 787

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+ +++E T+   R  GYVET+FGRR++ + I S   + R   ERAAINAP+QG+AAD
Sbjct: 788 FSGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAAD 847

Query: 899 ITRRAMISVHK--SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           I +RAM++V     +  H+    M+LQ+HDELVFE  E  + T    +VH +        
Sbjct: 848 IIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT----LVHEVSARMAAAA 903

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL V++ V ++W E +
Sbjct: 904 QLRVPLVVDVGVGHHWDEAH 923


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 369/986 (37%), Positives = 567/986 (57%), Gaps = 79/986 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+DG + IYRA++A   TP L+   +GL   AI GF N L ++L+N +     +H AV
Sbjct: 4   LFLLDGMALIYRAYFALSKTPRLT--SNGLNTGAIMGFTNTLLEVLKNQK----PTHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A T R+  +  YKA+R K+PE L   +P +    + F IP I   G+EADDII T
Sbjct: 58  VFDIDAPTNRHIEFESYKAHREKMPEDLSASIPYIFRLIEGFNIPIITKDGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP-EK 178
                E++GF V  ++ DKD  QLVS    +Y   +     E   +  ++ KW I    +
Sbjct: 118 LAKEGEQKGFTVYCMTPDKDFGQLVSDNIFIYKPARMGNGAETQGVPEILAKWEISDVSQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +  L GD++DNIPGIPGIG KTA  L+Q++G++E I+ N+ ++K  K +EN+  +AE
Sbjct: 178 VIDILGLWGDAVDNIPGIPGIGEKTAKKLVQDFGSVEGIIANSDKLK-GKMKENVETFAE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS++L  ++ DVPI    + L+LED N   L      LEF  L  RV          
Sbjct: 237 QGLLSKRLATIQLDVPIEFDEKSLLLEDPNKEVLEPLFAELEFRTLGKRV---------- 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                      E+  +A       DTT K S  S   D  S   ++ TPQ+   E +  +
Sbjct: 287 ---------FGEDFSVA-------DTTGKNS--SGQMDLFSTTVNDLTPQQ---EEIPPV 325

Query: 359 SQYPINNDSYTKI-VNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLD 415
           +   I+N ++  I V++ + QQ + K E  G  SF   T+T  +DA  +  + ++ +   
Sbjct: 326 ASNNIDNTAHEYILVDSSEAQQKLAK-ELAGQKSFCFDTETTGLDALVADIVGLSFAFEK 384

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K   ++ V T           DS  +     EI++  K   E+ +  K+G NIKYD L+
Sbjct: 385 GK---AYYVPT----------PDSREQ---ALEIVNIFKPVLEDANIEKVGQNIKYDILL 428

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPI 530
           L RY + ++G   D ML  Y++D   + H +  +A+ +L Y    I K      K    +
Sbjct: 429 LSRYDVKVKGTLFDTMLAHYLIDP-DTRHGMDVLAENYLGYIPVSITKLIGEKGKKQGNM 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    ++E+A E++++ LQL     P L     L + + ++ P++ V+S++E  G++I
Sbjct: 488 RDVEIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKI 547

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D D+L   S  I +++ +LE +IY+ +G KFN++SPKQLG++LF KL+  P   KTKTGQ
Sbjct: 548 DVDVLSVFSKTIEEDVRNLEASIYEKAGVKFNIASPKQLGEVLFDKLQLDPKAKKTKTGQ 607

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +KT  +D+       + I+++IL++RQL K+KSTY D+LP  IN  T  +HT Y+ A   
Sbjct: 608 YKT-GEDVLLTLANKSDIVQDILDFRQLQKLKSTYVDALPGLINPTTGLIHTSYNQAVAA 666

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+++R+AFI      +I SADYSQIELR++A +++   + 
Sbjct: 667 TGRLSSTNPNLQNIPIRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANML 726

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+   DIHR  AA+++G+ +++VS   RR+AK +NF IIYG S F L+  L IPR EA
Sbjct: 727 EAFQKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREA 786

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           AD I +YF ++ GI +Y+ K     ++NG+VETI  RR +  +INS   ++R   ER AI
Sbjct: 787 ADIIDQYFQQYSGIRDYMAKAIASAKENGFVETILKRRRYLRDINSANMTVRGFAERNAI 846

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAAD+ + AM+ + + +E  +L+ KM++Q+HDELVF+VP +E+     +I + M
Sbjct: 847 NAPIQGSAADMIKVAMLRIQEDIEQQQLSGKMIMQVHDELVFDVPLDEVEKFKTLIQNRM 906

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           + A    I L+VP++V I    NW E
Sbjct: 907 KTA----IPLQVPIEVEIGQGKNWLE 928


>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
          Length = 931

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 360/986 (36%), Positives = 537/986 (54%), Gaps = 73/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++  L LVDGSS++YRAF+A P L R   G P ++  G    +  +LQ  +K+ +A +
Sbjct: 1   MTQDKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPSSSPTGAIRGMVNMLQALKKDVVADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
              +FD    TFR+ IYP+YKA+RP +PE L  Q+  +    +  G   + I G EADD+
Sbjct: 60  AVCVFDASGPTFRDVIYPEYKAHRPAMPEELRAQIEPIHEVVRLLGWAVLAIPGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T  ++A ++G  V + S DKDL QLV+    + DT+  +K D+  V+ ++G+PP  MV
Sbjct: 120 IGTLAHVAAQQGVQVVVSSGDKDLSQLVNERITIIDTMNGKKRDVAGVMAEFGVPPALMV 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GD++DN+PG+P +G KTAA  L EYG+L+ ++  A  IK     EN+       
Sbjct: 180 DFQALVGDAVDNVPGVPKVGPKTAAKWLSEYGSLDTLMARAGEIK-GVVGENLRATLGWL 238

Query: 241 RLSRKLVMLRTDVPIT-----IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              R+LV ++TD  ++     +P L+ + +       L  F +   F  L   +      
Sbjct: 239 PTGRQLVTIQTDCDLSAHVAGLPALDSIAVGAQQTDALAGFYEKYGFKSLARALQQASPA 298

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
             A   P           G + +   D      TS  +  + Q S +             
Sbjct: 299 PPATALP-----------GQSGDLFGDLFGDHNTSPVAEAAQQRSVV------------- 334

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y  ++N  D  QW+ +L      +    T  +DA  ++ + ++ S  
Sbjct: 335 -------------YDTLLNWADFDQWLPRLLQADLVALDTETSALDAMRAQIVGLSFSVQ 381

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                     E  +I L  H   D+  +  L +++L+ LK + E+    K+G +IKYD+ 
Sbjct: 382 PG--------EAAYIPLR-HEGPDAPVQLPL-EQVLARLKPWLEDARHAKLGQHIKYDRH 431

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
           V   +GI +RG+  D ML SYVL+     H++AS+A++    T    +++       IP 
Sbjct: 432 VFANHGIEVRGYVHDTMLQSYVLEV-HKPHNLASLAERHTGRTGLNYEDLCGKGVHQIPF 490

Query: 531 DKISDSQVQEHAIENSNVILQ----LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            ++S  +   +A E+S+  L+    LW LL+     E+L  +YE L+    + + +ME  
Sbjct: 491 AQVSVDKAATYACEDSDQTLEVHQTLWPLLQAN---ERLRAIYE-LEMHSSEALFRMERN 546

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID  LL Q S  + + +L LE   Y+++G+ FNL+SPKQLG+I F KL  P   KT 
Sbjct: 547 GVLIDAALLAQQSHALGQRILRLETEAYEIAGQPFNLNSPKQLGEIFFDKLGMPVVRKTT 606

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   T  + LE++   D P+   +LE R LSK+KSTY D L      RT RVHT Y+ A
Sbjct: 607 TGARSTNEEVLEKL-AADYPLPARLLEHRSLSKLKSTYTDKLGLLALPRTGRVHTHYAQA 665

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRL+S +PNLQNIP++T  G++IR AF++PP + + SADYSQIELRI+AHI+    
Sbjct: 666 VAVTGRLSSSDPNLQNIPVRTPEGRRIREAFVAPPGRVIASADYSQIELRIMAHISGDPS 725

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F + LD+HR  AAE+FGV + +VS + RR+AK INF +IYG+S F LA  L + R 
Sbjct: 726 LLHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGLDRQ 785

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            A +YI+RYF R+PG+ +Y+E+TK   +  GYVET+FGRR+   EINSP    R   ERA
Sbjct: 786 AAKNYIQRYFERYPGVRQYMEETKARAKSLGYVETVFGRRLMLPEINSPNGPRRAAAERA 845

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AAD+ ++AM++V   L+  K    M++Q+HDELVFE+PE  +      +  
Sbjct: 846 AINAPMQGTAADLIKKAMVAVQARLDAEKPEILMIMQVHDELVFELPENAVDWLRAEVPR 905

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972
            M         LRVPL   + V  NW
Sbjct: 906 LMAGVA----ALRVPLLAEVGVGGNW 927


>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
 gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
          Length = 906

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 349/956 (36%), Positives = 538/956 (56%), Gaps = 71/956 (7%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +P NAI G  NM+  ++    ++  +   AVIFD    TFR+E+Y  YKA+RP +P+ L 
Sbjct: 6   IPTNAIYGVVNMIRSMM----RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV    
Sbjct: 62  CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            L +T+    +D + VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G
Sbjct: 122 TLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181

Query: 213 NLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            LE +  N  +I        K   + + +  + A+LS +L  ++ DV +    + L+ + 
Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEDNRDNAKLSYQLATIKCDVELEESPQTLLKQT 241

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +   L+S    L F   +  +               LD  T    G+     +  D   
Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GV-----VTADEQT 277

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           KTS   S++  T+  ++   P+              I+   Y  I+N +D Q W++KL+ 
Sbjct: 278 KTS---SVTVSTAASHAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQ 325

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   TD +D   +  + ++ + + + +     V   ++D      +D        
Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW------- 377

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505
             +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+
Sbjct: 378 --VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435

Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P  ++
Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LI 493

Query: 563 E---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           E   KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+  Y+L+G+
Sbjct: 494 EQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGK 553

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FN+SSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K
Sbjct: 554 PFNVSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAK 612

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++
Sbjct: 613 LKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVA 672

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           P   K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR
Sbjct: 673 PHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRR 732

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYV
Sbjct: 733 RAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYV 792

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLAT 918
           ETIFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E +     
Sbjct: 793 ETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRV 852

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K+L+Q+HDELVFEV E  ++     +   ME A      L VPL       +NW +
Sbjct: 853 KLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWDQ 904


>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
 gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
          Length = 946

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 349/993 (35%), Positives = 552/993 (55%), Gaps = 73/993 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 5   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 60  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V+ K+G+PP K+V 
Sbjct: 120 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPGKIVD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L++++  A  IK     EN+    +   
Sbjct: 180 YLSLIGDTVDNVPGVPKVGPKTAVKWLGEYGSLDSVIARAGEIKGVVG-ENLRNTLDWLP 238

Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  +   +P  E L+    +  +L+ F     F   +   +         
Sbjct: 239 KGRELLTVKTDCDLATEVPTFEALVDGGEDRAKLVDFFGRYGFKTWLREASGE------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                  +  T + G A      R       Q++  +    +         LF       
Sbjct: 292 ------SLPDTRSVGAA------RKAATPVKQYAPEAAAQPQAG-------LFD------ 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            + P     Y  +     ++ W++ L+          T ++D   ++ + +++S      
Sbjct: 327 VEAPPAEVKYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGLSLSVEPG-- 384

Query: 419 DTSFKVETIFIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
                 +  +I ++ H   D +G      L++E +L+ +K + E+    K+G ++KYD  
Sbjct: 385 ------QACYIPVA-HRGPDVSGLDAAGQLSREAVLARMKPWLEDAARKKVGQHLKYDAH 437

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPI 530
           V   +GI++RG   D ML SYVL S R+ H + ++A++ L   + T +E+     S I  
Sbjct: 438 VFANHGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGASQIGF 496

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           D++   +  E+A E++++ L+L   L PK+  + KL +VYE+++ P   V+ +ME  G+ 
Sbjct: 497 DEVPLDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVL 556

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID + L + S  + + LL LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT +G 
Sbjct: 557 IDAERLARQSTGLGQRLLELEQQAYALAGQPFNLNSPKQIGEIFFTQLKLPVIKKTASGA 616

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +
Sbjct: 617 PSTDEEVLQKL-AEDYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV 675

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH+++   L +
Sbjct: 676 TGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLR 735

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R  A 
Sbjct: 736 AFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAK 795

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERAAIN
Sbjct: 796 LYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAIN 855

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEEITTAS 941
           AP+QG+AAD+ + +M++V   L+    A        T+ ++Q+HDELV EVP+EE++   
Sbjct: 856 APMQGTAADLIKLSMLAVQDWLDGSPSAGKPGAPMRTRQVMQVHDELVLEVPQEELSLVR 915

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +   M        +LRVPL   + V  NW+E
Sbjct: 916 ERLPELMCGVA----SLRVPLVAEVGVGANWEE 944


>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 933

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 365/987 (36%), Positives = 543/987 (55%), Gaps = 79/987 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQP----SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + + G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K G  V I + DKD+ QLV     L +T+    +D   VI+K+GIPPE ++   A
Sbjct: 122 ASQASKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  + +L    
Sbjct: 182 LMGDSSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGKKLLAEKA 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV +      L + D +   LI++    EF + +  V          
Sbjct: 242 MADLSYALATIKTDVMLEFSPHELAIGDSDNDALIAYFGRYEFKRWLGEV---------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQ-KLFLERLQ 356
                                ++   T+  S     ++Q  KIN  Q TP  K+    ++
Sbjct: 292 ---------------------MNGAGTVTQS-----AEQPVKINHYQATPAAKIDESAVE 325

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              ++ I+   Y  I+   D+ +W++KL      +    TD +D   +  + ++ +   +
Sbjct: 326 NAVKFHIDRSRYENILTEADLARWLEKLNAAKLIAVDTETDGLDYMSANLVGVSFAL--E 383

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
             + ++        L +H       K       LS LK   EN +  KIG N+K+D  + 
Sbjct: 384 NGEAAY--------LPLHLDYLGAPKTLEKNTALSALKPILENPNIGKIGQNLKFDMTIF 435

Query: 477 HRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
            R GI ++G E D ML+SY LDS GR  H++  +A+++L +   + ++I    K+ +  +
Sbjct: 436 ARNGIDLQGIEFDTMLLSYTLDSTGR--HNMDDLAKRYLGHQTISFEDIAGKGKNQLTFN 493

Query: 532 KISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +I   Q  E+A E+++V ++L    W  L+P+     L+ +Y+ ++ P++ V+S+ME  G
Sbjct: 494 QIPLEQAGEYAAEDADVTMKLQQVLWQKLQPQ---PGLVELYQSIELPLLGVLSRMERYG 550

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID D L   S EI++ L +LE   + L+G+ FNL+S KQL +ILF KL  P   KT  
Sbjct: 551 VLIDSDALFLQSNEITERLTALEMQAHTLAGQPFNLASTKQLQEILFDKLGLPVLQKTPK 610

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A 
Sbjct: 611 GVPSTNEEVLEEL-AYSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV 669

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+I+ADYSQIELRI+AH++    L
Sbjct: 670 TATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGL 729

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAEIFG+ +E+V+ + RR+AK INF +IYG+S F L+ QL I R++
Sbjct: 730 INAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGISRAD 789

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+P +  +I   +   +  GYVET+FGRR++  EINS  +  R   ER A
Sbjct: 790 AQRYMDLYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAERVA 849

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AAD  +RAMI +     D      M++Q+HDELVFEV  E+I   S +I   
Sbjct: 850 INAPMQGTAADTIKRAMIKLDGITRDDP-DIHMIMQVHDELVFEVRSEKIAFFSDLIKQH 908

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A      L VPL V++ V  NW E
Sbjct: 909 MEAAA----ELVVPLIVDVGVGENWDE 931


>gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48]
 gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Pseudomonas entomophila L48]
          Length = 922

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 358/987 (36%), Positives = 532/987 (53%), Gaps = 95/987 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 10  LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 64

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I T   
Sbjct: 65  AKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVRALGYPLLCVEGVEADDVIGTLAR 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +   G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 125 SSAAAGRPVIISTGDKDMAQLVDGHVTLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 184

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +   A R   K     + E+ +
Sbjct: 185 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYQNLDKVPALAIR-GAKTLPAKLEEHRD 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DV + + ++ L+  + +   L++    +EF   +             
Sbjct: 244 AAFLSYELATIKCDVELDVEVDALVCGEPDREALLALYTEMEFKSWV------------- 290

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E+ R             D  + + +++ P+          
Sbjct: 291 -------------------AEVQRSA-------PRTGDSDAAVAAQEAPEAKV------- 317

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I++      W++KL      +F   T  +DA  +  + +         
Sbjct: 318 ------EPKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQASIVGL--------- 362

Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
             SF VE     ++ L+ H  + +  +  L +E +L  LK   E+    KIG N KYD  
Sbjct: 363 --SFAVEPNEAAYVPLA-HDYEGAPAQ--LDREAVLLALKPLLEDPAKGKIGQNAKYDIN 417

Query: 475 VLHRY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           +L      I MRG   D ML SYVLDS  + HD+ S+AQK+L +T    ++I       +
Sbjct: 418 ILANGSPAILMRGVAYDTMLESYVLDSTATRHDMDSLAQKYLDHTTIGFEDIAGKGAKQL 477

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITG 587
             ++I   +   +A E+++V L+L   L+ +L     +L V   ++ P++ V++++E  G
Sbjct: 478 TFNQIPLEKAGPYAAEDADVTLRLHHALQARLANTPSVLPVLMDIEMPLVPVLAKIERQG 537

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D  LL   S E+   L+ LE   Y L+GE+FNL SPKQLG IL+ KL  P  +KT  
Sbjct: 538 ALVDAALLGVQSGELGAKLVELEREAYALAGEEFNLGSPKQLGAILYDKLGMPVLSKTAK 597

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L+ +     P+ K ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 598 GQPSTAEAVLDDLAEQGYPLPKVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 657

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIP++T  G++IR+AF++ P  KL++ADYSQIELRI+AH+AK   L
Sbjct: 658 AATGRLSSSDPNLQNIPVRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGL 717

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N LD+HR  AAE+FGV +  V+   RR AK INF +IYG+S F LA Q+ + R +
Sbjct: 718 LHAFRNDLDVHRATAAEVFGVALADVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 777

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER A
Sbjct: 778 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 837

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAM++V   L D KL  +++LQ+HDELV EV E+ +      I   
Sbjct: 838 INAPMQGTAADIIKRAMVAVDNWLTDSKLDARVILQVHDELVLEVREDLVEQVKDEIRGY 897

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M  A      L VPL V + V +NW E
Sbjct: 898 MSGAA----ELDVPLLVEVGVGSNWDE 920


>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440]
 gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440]
          Length = 915

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 356/988 (36%), Positives = 531/988 (53%), Gaps = 100/988 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +   G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +   A R   K     + E+ +
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIR-GAKTLPAKLEEHRD 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ + +E L+  + +   L++    +EF   +             
Sbjct: 240 AAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWV------------- 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E+ RD        +   +   K+ ++              
Sbjct: 287 -------------------AELQRDAAKAGDDVAPAVEPAVKVEAK-------------- 313

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I++      W++KL      +F   T  +DA  ++ + +         
Sbjct: 314 ---------YETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGL--------- 355

Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNT-LTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
             SF VE     ++ L+     D  G    L +E +L  LK   E+    K+G N KYD 
Sbjct: 356 --SFAVEPHEAAYVPLA----HDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDI 409

Query: 474 LVLHRY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527
            +L      I MRG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I       
Sbjct: 410 NILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQ 469

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEIT 586
           +  ++I+  +   +A E++++ L+L   L+ +L     +  V   ++ P++ V++++E  
Sbjct: 470 LTFNQINLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQ 529

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G  +D +LLK  S E+   +  LE   Y+L+GE FNL SPKQLG IL+ KL  P  +KT 
Sbjct: 530 GALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTA 589

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            GQ  T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A
Sbjct: 590 KGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQA 649

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   
Sbjct: 650 VAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEG 709

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F N LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R 
Sbjct: 710 LLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRK 769

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           ++ DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER 
Sbjct: 770 QSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERT 829

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AADI +RAM+ V   L +  L  +++LQ+HDELV EV E+ +      I  
Sbjct: 830 AINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQ 889

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M +A      L VPL V   V  NW E
Sbjct: 890 HMSQAA----QLDVPLLVEAGVGANWDE 913


>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
 gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
          Length = 919

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 354/979 (36%), Positives = 546/979 (55%), Gaps = 80/979 (8%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDGS F++RAF+A P L+    GL  NAI G  + + KL++  +     +H AVIFD P
Sbjct: 6   LVDGSYFLFRAFHALPQLTTS-TGLHTNAIRGAISAIQKLMRRIQP----THMAVIFDTP 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR+E+ P YK +RP +P  L  Q+P +    +A GIP   + G EADDII T    A
Sbjct: 61  EPTFRHELSPLYKGDRPSMPSELSQQIPYLHALIRALGIPLYSLPGAEADDIIGTLAKRA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           E  G  V I + DKD+ QLV+    L D+ K++ +DI+ V +K+G+ P +++    L GD
Sbjct: 121 EAAGHQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDIQGVFEKFGVWPHQIIDYLTLMGD 180

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + D I G+PG+G KTAA LL EYG+L  IL N   IK  +  ++I +  E   +  +L  
Sbjct: 181 ASDGIMGVPGVGAKTAAKLLNEYGSLGGILENVEHIK-GRVSQSIKDNLEGITIDHQLAT 239

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
           +  D+ + I  E L L D +   L +    LEF   +  +   ++ +           NT
Sbjct: 240 IVCDLDLNISWEDLKLADPHVETLRNLYTELEFRNQLQSLDHPHNPN-----------NT 288

Query: 309 TENKGIAIETEI--DRDTTIKTSQFSSLSDQTSKINSE----QTPQKLFLERLQKLSQYP 362
           T  +  A  T +  ++D   + +  SS  D+  +        QT  +L  +R+   +++ 
Sbjct: 289 TYKQASAQATALPANKDIPDEHATLSSEEDRLGEATYHTVLTQTDWELLFQRMSSETRFA 348

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ +       T  +   V ++       F +  D  DA++                   
Sbjct: 349 IDTE-------TTSLDYRVAEM-----VGFSVAFDAKDAYY------------------- 377

Query: 423 KVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                     V  + D  G    L +E +L+ +K   EN+   KIGH++KYD  +   +G
Sbjct: 378 ----------VPLAHDYAGAPEQLNREQVLAQIKPILENDQVEKIGHHLKYDAHIFANHG 427

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I ++G F D ML SYVL+S  + H +  +A+ +LS+   T +++          ++I   
Sbjct: 428 IELKGWFFDTMLASYVLNSVATRHGMDDVARLYLSHLTTTFEQVAGKGAKQKSFNQIELE 487

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +A E+++V  +L+ +L  KL    +L ++   ++ P+  +++ ME  GI++D   L
Sbjct: 488 VASPYAAEDAHVTYRLYEVLAEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFL 547

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            Q+S E +K +  LE+   +++GE FN++SPKQ+G++LF KL    G KT TGQ+ T+  
Sbjct: 548 DQLSIEFAKTMQELEQQAMEMAGETFNIASPKQVGEVLFEKLGIKGGKKTTTGQFSTSES 607

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE+I   ++PI   ILE R L+K+KSTY D+L    N  T RVHT Y  A T TGRL+S
Sbjct: 608 ILEKI---EHPIAAVILEHRSLAKLKSTYTDALVKQSNNSTHRVHTSYHQALTATGRLSS 664

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+ ++G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F +  
Sbjct: 665 SDPNLQNIPIRGEIGRQIRKAFIAPAGRVLLAADYSQIELRLMAHFSQDDALLDAFRHGQ 724

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR  AAE+ G+ +E V+   RR AK +NF ++YG+S F L  QL   R E+ DYIK+Y
Sbjct: 725 DVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQDYIKQY 784

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           FHR+PGI+EY+++T+    + G+V+T+FGRR++  +I++    +R   ERAAINAP+QGS
Sbjct: 785 FHRYPGIYEYMQRTRQLALEQGFVDTLFGRRLYTPDIDARNMMVRKAAERAAINAPLQGS 844

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI+V K L   K   ++LLQ+HDELVFEV E      +  +   ME      
Sbjct: 845 AADIIKLAMIAVDKILP--KDQARLLLQVHDELVFEVDENIADELAPQLAEVMESV---- 898

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + + VPL V +    NW+E
Sbjct: 899 VEISVPLLVEVGKGCNWEE 917


>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
 gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
          Length = 909

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 361/991 (36%), Positives = 544/991 (54%), Gaps = 101/991 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A P L+    G    A+ G  NM+ +L    +K+   S 
Sbjct: 1   MSDKQPLILVDGSSYLYRAYHALPPLTNSK-GAATGAVKGVINMIRRL----QKDYPEST 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR++IYP+YKANRP +P+ L  Q+  +    +  G+P +   G EADD+
Sbjct: 56  IAVVFDAKGKTFRDDIYPEYKANRPPMPDDLREQIEPIHSIVRGMGLPLLCEPGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A + G +V + + DKD+ QLV+    L +T+ +  +D + V+ K+GIPPE ++
Sbjct: 116 IGTLAKEASEAGCSVIVSTGDKDMAQLVNDRVTLVNTMNDTLMDPQGVVDKFGIPPELII 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLL-------QEYGNLENILINASRIKQKKRRENI 233
            L AL GD +DNIPG+PG+G KTA  LL       Q Y +L+ +  N S    K     +
Sbjct: 176 DLLALMGDKVDNIPGVPGVGEKTALGLLQGLGGLDQIYASLDEVQ-NLSFRGAKTMAAKL 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG----PRLISFLKALEFTKLINRVA 289
            +  + A LS +L  + TD  + +PL +  L   NG      L++  + LEF   I+   
Sbjct: 235 EKERDNAYLSYELATIATD--LKLPLVYADL--ANGVPDKAALLALFRELEFKSWIDE-- 288

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
                                     +E E   D+          SD T + ++ +    
Sbjct: 289 --------------------------LENEASGDS----------SDATVEADTREQ--- 309

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
                            +Y  +++      W+ +L      +F   T +++   +  + +
Sbjct: 310 -----------------NYVTVLDQATFDDWLSRLSEAPLFAFDTETTSLNYMEADIVGL 352

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHN 468
           + +          + E  ++ L+ H+   +  +  L ++ IL+ LK   E+    K+G N
Sbjct: 353 SFAV--------ERGEAAYVPLA-HSYPGAPAQ--LDRDAILAALKPLLEDPAKPKLGQN 401

Query: 469 IKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
           +KYD  VL RY I M+G   D ML SYVLDS  + HD+ S+A K+L  +    +++    
Sbjct: 402 LKYDASVLARYDIHMQGIAFDTMLESYVLDSTGTRHDMDSLALKYLGRSTTHFEDVAGKG 461

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQM 583
              I  D++   Q   +A E++ V L L   L PKL     L  V+  ++ P++ V+S+M
Sbjct: 462 AKQITFDQVGIEQAGPYAAEDAEVTLALHETLWPKLQESAGLASVFSDIELPLVPVLSRM 521

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TG  +D++ L + S E+   L +LEE  ++L+G+ FNL SPKQLG ILF KL+ P   
Sbjct: 522 ERTGALLDEERLWEQSRELGGRLQALEEEAHNLAGQVFNLGSPKQLGQILFEKLELPVIK 581

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT  G   T  + L+++   D P+ K ++E R LSK+KSTY D LP  IN RT R+HT Y
Sbjct: 582 KTPKGAPSTAEEVLQELAL-DYPLPKLLIEHRGLSKLKSTYTDKLPGMINPRTGRIHTSY 640

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
             A T TGRL+S +PNLQNIPI+T+ G++IR+AFI+    ++++ADYSQIELRI+AH++K
Sbjct: 641 HQAVTATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAAEGYQVVAADYSQIELRIMAHLSK 700

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + F  +LD+H   AAE+FGV+++ VS + RR AK INF +IYG+S F LA QLR+
Sbjct: 701 DAGLLEAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINFGLIYGMSAFGLARQLRL 760

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EA  YI  YF R+PG+ EY++ T+    + GYVET+FGRR++  EIN    + +   
Sbjct: 761 DRGEAQRYIDVYFERYPGVREYMDNTRALAHEQGYVETLFGRRLYLPEINVRNKNRQQAA 820

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AINAP+QG+AADI +RAMI+V + + D  +  KM++Q+HDELV EV E+++      
Sbjct: 821 ERTAINAPMQGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDELVLEVAEDQLDPVCDE 880

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   M  A      L VPL V +    NW E
Sbjct: 881 LCKQMSAAA----ELAVPLLVEVGRGANWDE 907


>gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
 gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
          Length = 928

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 352/980 (35%), Positives = 527/980 (53%), Gaps = 71/980 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L R  DG PV A+ G  NML +L     KE    + A +FD
Sbjct: 4   LLLIDGSSYLYRAFHAMPDL-RSPDGRPVGAVYGMVNMLRRL----EKEVEFDYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YP+YKANRP +PE L  Q+  V    QA G P + + G EADD+I T   
Sbjct: 59  AKGKTFRDDLYPEYKANRPSMPEELASQITAVHDVVQASGWPMLVVPGVEADDVIGTLAR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +    G  V + + DKD+ QLV+P   L +T+  E +D   V +K+G+PP  ++    L 
Sbjct: 119 LGAAAGMKVIVSTGDKDMAQLVTPDVTLVNTMTNELLDEAGVKEKFGVPPSLIIDYLTLI 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD +DN+PG+   G KTA   L+EYG+L+ I+  A  +   K  EN+    +   + R+L
Sbjct: 179 GDKVDNVPGVDKCGPKTAVKWLEEYGSLDAIIAQAGSVG-GKVGENLRAALDWLPMGRRL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNG----PRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           + +  DV +   L H +    +G    PRL    + L F      V              
Sbjct: 238 ITIDCDVDLEADLPHGLPGLQHGQKDKPRLAELFQDLGFRTFYREV-------------- 283

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                 TE   +    +   D          +  + +   +        LER        
Sbjct: 284 ------TEGAEMPAVAQRGEDAPRGGEAQGDMFAEPAAPAAPPALSAGALER-------- 329

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  I+    +  W+ +L      SF   T ++D   ++ + +           SF
Sbjct: 330 ----HYETILTEAQLDAWLARLMAAKVVSFDTETTSLDPMQARIVGV-----------SF 374

Query: 423 KVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            VE     ++ L  H +     +    +  L+ LK + E+    K G N+KYD  VL  +
Sbjct: 375 SVEAGHAAYLPLEHHYA--GAPQQLPLEAALAKLKPWLEDASKKKCGQNLKYDCHVLANH 432

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535
           GI++ G  +D ML SYVL+S    H++  +A++ L   + + +EI       I   ++  
Sbjct: 433 GIALAGIADDSMLASYVLES-HQRHNMDDLARRHLGENTVSYEEICGKGAKQIGFSEVDV 491

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                +A E++++ L+L      +L  + L  VY  ++ P+ +V+ +ME  G+ ID+D L
Sbjct: 492 DIAANYAAEDADITLRLNQFFAGQLFGD-LEKVYRDIELPVAEVLFKMERHGVLIDRDKL 550

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTT 653
              S ++   +L LE+  Y+L+G+ FNL+SPKQL +ILF KL  P+    KT +G + T 
Sbjct: 551 AAQSHQLGSQMLELEQRAYELAGQPFNLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTD 610

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              LEQ+   D+P+ K ILE+R L+K+KSTY D LP  I  +T RVHT Y+ A  +TGRL
Sbjct: 611 ESVLEQLAL-DHPLPKCILEYRGLAKLKSTYTDKLPTLIYPQTGRVHTTYAQAVAITGRL 669

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G+++R AFI+P   +++SADYSQIELRI+AH++    + + F +
Sbjct: 670 ASNDPNLQNIPVRTAEGRRVREAFIAPAGWQIVSADYSQIELRIMAHLSDDEGMLKAFAS 729

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV +  V+   RR AK INF +IYG+S F LA QL I RS A  YI 
Sbjct: 730 GEDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLIYGMSAFGLAAQLDIERSAAQQYID 789

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ EY++ T+   R+ GYVET+FGRR++  +I       R   ERAAINAP+Q
Sbjct: 790 RYFMRYPGVAEYMQATREKAREQGYVETVFGRRLYLPDIKLSNPGRRAGAERAAINAPMQ 849

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + AMI+V   LE   L +K+++Q+HDELV EVP+ E+    + +   M  A  
Sbjct: 850 GTAADLIKLAMIAVQDWLERDGLQSKLIMQVHDELVLEVPQAELEQVKRRLPEIMAGAA- 908

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
               L+VPL   +   ++W+
Sbjct: 909 ---ELKVPLLAEVGAGDSWE 925


>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
 gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
          Length = 912

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 349/978 (35%), Positives = 555/978 (56%), Gaps = 81/978 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R     P  AI G  NML +L     KE    + A +FD
Sbjct: 4   LLLVDGSSYLYRAFHALPDL-RNRLNEPTGAIYGVLNMLRRL----HKEYRPDYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IYP YKA+RP +PE L+ Q+  +    +A G P +  +G EADD+I T   
Sbjct: 59  AKGKTFRDDIYPQYKAHRPPMPEDLVCQIGPLYACIRAMGWPLLIEEGVEADDVIGTLVE 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A        I + DKD+ QLV P   L +T+  E +D   +++K+G+ P +++   AL 
Sbjct: 119 RAIARQAQCVIATGDKDIAQLVRPGIWLVNTMNNESLDESGILQKFGVTPAQIIDFLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DNIPG+  +G KTA   L +YG L++++ +A  IK     EN+ +  +  ++SRKL
Sbjct: 179 GDSVDNIPGVEKVGPKTAVKWLDQYGTLDDLIAHADEIK-GVVGENLRKALDWLKVSRKL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           + ++ DVP+ +  + L+    +  RL    + LEF   +  +                  
Sbjct: 238 LTIKCDVPLAMDWQDLVAVPPDTARLTELYEHLEFRSWLRELK----------------- 280

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                     +   +++   ++S  +++ D  S    E                   N+D
Sbjct: 281 ----------QPGPEKNEKAESSVMAAIVDDPSVPEGE-------------------NDD 311

Query: 367 S--YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I+    +  W+ + E+    S    T +++   +K + +           SF +
Sbjct: 312 GRDYQIILTDAQLGDWLAQCESAELVSIDTETTSLNPMEAKLVGL-----------SFCM 360

Query: 425 E---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           E     +I L+ H     +  N   +++L  LK + E++  LKIG N+KYD+ V   +G+
Sbjct: 361 ELGQAAYIPLAHHYPGVPSQLNR--EQVLQRLKPWLESDEKLKIGQNLKYDRHVFANHGV 418

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537
            + G   D +L SYVL+S   SHD+ S+A + L   + +  E+       I  +++   +
Sbjct: 419 MLNGIVHDTLLQSYVLES-HLSHDLDSLASRHLGIQTISYDEVTGKGAKRIGFEQVEIHR 477

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E++++ L+L  +L P +  +  L ++Y++++ P+++V+ ++E  G+ +D DLL+
Sbjct: 478 AGIYAAEDADIPLRLHRVLYPVISQDAHLEYIYQQIEIPLLEVLFRIERNGVLLDTDLLR 537

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E+++ L++LE+  + L+G  FNL+S KQ+ +ILF + K P   KT  G   T  + 
Sbjct: 538 VQSGELTQQLVALEQQAHSLAGHAFNLNSTKQIQEILFGQHKLPVIKKTPKGVPSTDEEV 597

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L+++   D P+ K +L++R L+K+KSTY D LP  +NK+T RVHT Y+ A  +TGRLAS 
Sbjct: 598 LQRL-ASDYPLPKVLLDYRGLAKLKSTYIDKLPQMVNKQTGRVHTHYAQAVAVTGRLASN 656

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T  G++IR AFI+P    ++SADYSQIELRI+AHI+    L   F    D
Sbjct: 657 DPNLQNIPVRTPEGRRIREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLIHAFSEGQD 716

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+FGV +E+V+P+ RR+AK INF +IYG+S F LATQL I R+ A  +I RYF
Sbjct: 717 IHRATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMSEFGLATQLGIERTAARTFIDRYF 776

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ +Y+++T+   +Q+GYVET+ GRR+   +I S + + +   ERAAINAP+QG+A
Sbjct: 777 ARYPGVADYMQRTRELAKQHGYVETVLGRRLQLSDIRSNQRNRQMGAERAAINAPMQGTA 836

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMISVH+ L + +L +K+++Q+HDELV EV  +E+    + +   ME      +
Sbjct: 837 ADIIKLAMISVHRWLAEAQLQSKLIMQVHDELVLEVLVDELPVIKENLPRLMENV----L 892

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPLKV   +  NW +
Sbjct: 893 KLDVPLKVQTGIGKNWDQ 910


>gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1]
 gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1]
          Length = 923

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 353/980 (36%), Positives = 535/980 (54%), Gaps = 70/980 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+         + A + D
Sbjct: 4   LVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVID 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+ +  +YK +RP +P+ L  Q+  +     A GI  + I G EADD+I T   
Sbjct: 58  APGKTFRDALDCEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIDGVEADDVIGTLAL 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQAL 185
            A  +G AVTI + DKD  QLV P   L +T+   ++D    VI K+G+ P++++   AL
Sbjct: 118 AAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLAL 177

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG+   G KTAA  L EYG+L+ ++ NA +IK K   +N+        L+R 
Sbjct: 178 MGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIG-DNLRIVLPRLLLNRA 236

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L+ ++TDV +    + L L + +   L  F +   FT+ +       + D  ++   V +
Sbjct: 237 LITIKTDVVLEKRPQDLALRERDTEALRDFYRRYGFTQALK------ELDGGSVAVTVAE 290

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 +        D    ++ +   S   +                            
Sbjct: 291 QEPGRRRNAGFHVAPDASVAMEINPALSAPGE---------------------------- 322

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  I   + +Q W+ +L   G  +    TD++D   +  I +           SF  E
Sbjct: 323 --YETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGL-----------SFASE 369

Query: 426 TIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +     +    D  G          L+ L+   E+    K+G + KYD  VL RYGI +
Sbjct: 370 -VGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDPAVRKVGQHGKYDMHVLRRYGIVL 428

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRK--EILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL SG + HD+ ++A++ L Y T K  +++      IP   +   +  
Sbjct: 429 AGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEAT 488

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A E++++ L+L  +L PKL+ E +L  VY  ++ P++ V+ ++E  G+QID + L + 
Sbjct: 489 QYAAEDADITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQ 548

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++S+ ++  ++   DL+G  FNL SPKQL  +LF +LK P   KT  GQ  T  + LE
Sbjct: 549 SADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALE 608

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            I    + + + ILE+R L+K+++TY + LP  I+  T RVHT Y  A   TGRL+S +P
Sbjct: 609 AI-VDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDP 667

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+TD G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+ +D+H
Sbjct: 668 NLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVH 727

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             +AAE+FG  I++V+P  RR AK INF +IYG+S F LA QL I R EA DYI  YF R
Sbjct: 728 CAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDR 787

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+ +++E T+   R  GYVET+FGRR++ + I S   + R   ERAAINAP+QG+AAD
Sbjct: 788 FAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAAD 847

Query: 899 ITRRAMISVHK--SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           I +RAM++V     +  H+    M+LQ+HDELVFE  E  + T    +VH +        
Sbjct: 848 IIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT----LVHEVSARMAAAA 903

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL V++ V ++W E +
Sbjct: 904 QLRVPLVVDVGVGHHWDEAH 923


>gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
 gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
          Length = 929

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 356/988 (36%), Positives = 540/988 (54%), Gaps = 86/988 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y +YKANRP +P+ +  Q+  +  +  A G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDDMYAEYKANRPSMPDDMRVQIEPLHASVIALGFPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+E V +K+G+ PE+++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA-ALLLQEYGNLENI-----LINASRIKQKKRRENILE-YAET 239
           GDS DNIPG+PGIG KTA  LL+   G L+ +     ++    I+  K     LE + E 
Sbjct: 181 GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEM 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +L  ++ DVP+ + L+ L L + +  +L+     LEF   ++             
Sbjct: 241 AFLSYQLATIKVDVPLDVGLDDLHLGEPDREKLVELYSLLEFKSWLD------------- 287

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                              E+ RD   K  + S          +E TP  +     Q + 
Sbjct: 288 -------------------ELQRDA--KRVELS---------GAEATPAAV---PPQAVE 314

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q P+    Y  I++ +    W++KL+     +F   T  +DA  ++ + ++ S +   + 
Sbjct: 315 QAPLEL-QYETILDQERFDAWLEKLKGAKLIAFDTETTGIDAQQAQLVGLSFS-VKAGEA 372

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--- 476
               +   ++       +DS         +L  LK   E+   LK+G + K+D  +L   
Sbjct: 373 AYVPLTHSYMGAPAQLDRDS---------VLLALKPLLEDPKLLKVGQHAKFDMNILANC 423

Query: 477 -----HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527
                   GI++RG   D ML SYVL+S  + HD+ S+AQK+L ++    ++I       
Sbjct: 424 AIGGDQANGITVRGVAFDTMLESYVLNSTATRHDMDSLAQKYLDHSTVSFQDIAGKGAKQ 483

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEIT 586
           +  D+I   Q   +A E+++V L+L  +L  KL  +  L  V   ++ P++ V++++E  
Sbjct: 484 LTFDQIPLEQAGPYAAEDADVTLRLHQVLFDKLSAIPSLASVLTDIEMPLVPVLARIERQ 543

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G  +D  LL   S E+   +++LE   ++++GE+FNL SPKQLG IL+ KL  P   KT 
Sbjct: 544 GALVDDKLLGVQSIELGDKMVALEREAFEIAGEEFNLGSPKQLGSILYDKLGLPVLKKTA 603

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            GQ  T  + L ++   D P+ + ++++R +SK+KSTY D LP  IN RT R+HT Y  A
Sbjct: 604 KGQPSTAEEVLAKLAEDDYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQA 663

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRL+S +PNLQNIP++T  G++IR+AFI+PP  KL++ADYSQIELRI+AH+++   
Sbjct: 664 VASTGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPPGYKLLAADYSQIELRIMAHLSRDEG 723

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F N+LD+H   AAE+F V ++ V+   RR AK INF +IYG+   +L   + +   
Sbjct: 724 LLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDTK 783

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  YI  YF R+PG+ EY+++T+      GYVETIFGRR++  EINS K   R   ER 
Sbjct: 784 QAKAYIDTYFARYPGVREYMDRTRAQAADQGYVETIFGRRLYLPEINSNKPQERAGAERT 843

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AADI ++AM++V   L    L  +++LQ+HDELV EV E+ +    + I  
Sbjct: 844 AINAPMQGTAADIIKKAMVAVDNWLASSGLDARVILQVHDELVLEVREDLVDQVREEIRG 903

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M  A      L VPL V + V NNW E
Sbjct: 904 HMSGAA----TLDVPLLVEVGVGNNWDE 927


>gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
 gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
          Length = 950

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 379/983 (38%), Positives = 561/983 (57%), Gaps = 78/983 (7%)

Query: 11  DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV 70
           DGS+FI+RA++A P LS    G P NAI GF +ML  L+    K+    + A + D    
Sbjct: 23  DGSNFIFRAYHALPPLS-TSTGTPTNAIRGFLSMLRVLM----KDVPTDYVACVVDPKGK 77

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           TFR++IYPDYKANRP +PE L  Q+PL+    Q  GIP ++I G EADD I T T  A  
Sbjct: 78  TFRSDIYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIPGIEADDTIGTLTKKAVA 137

Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGD 188
           EGF V I + DKD  QLV+    L +T+ ++   ++ E V KK+G+PPEK++   AL GD
Sbjct: 138 EGFNVVIATGDKDFAQLVNDNVLLVNTMGKDNSWLNSEGVEKKFGVPPEKIIDFLALMGD 197

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
            IDN+PG+P  G KTAA  + E+G+++ ++ NA ++K K   EN+        ++R+LV 
Sbjct: 198 KIDNVPGVPKCGEKTAAKWITEFGSVDGVIENAEKVKGK-IGENLRSALGFLPIARQLVT 256

Query: 249 LRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           ++TD  ++  +P LE L L+  N   L+ +   LEF      +  T D     ++P  L+
Sbjct: 257 IKTDADLSAEVPSLESLKLKTPNRTELLDYYNKLEFRSWAKELKKT-DV-PGEVKP--LE 312

Query: 306 INTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            +TT  K  A+    ++ DT         L  Q  +  +E+T + +              
Sbjct: 313 TSTTAQKRAAVGAAPVEGDTL-------DLFSQEQESETERTLEII-------------- 351

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
               T     K++   ++ L T     F ++ D        P+ +A  T D K  TS+  
Sbjct: 352 ----TDKAKAKELAAHLEDLVTKDGFEFYVLADGSSQQEYMPVGVAFGTTDGK--TSY-- 403

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             + ID  V  +Q  T      KEI     +  E++  +K G++ KY K V    GI++ 
Sbjct: 404 --VPIDNDVLLAQGLTLGTF--KEIFG---RVLEHKKPIKCGYDTKYMKHVFANVGINLA 456

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G  +D+ML SYVL++ RS H I  +A  WL Y     +E+L      +   ++S  +  E
Sbjct: 457 GVSDDVMLESYVLEAHRS-HTIEKLAANWLKYELRGEEELLGKGAKKLSFSQVSVEKAAE 515

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            A E   ++ +L  L +  L  + KL  +Y  ++ P+ DV+ +ME  G+ ID  LL Q +
Sbjct: 516 FASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSDVLFKMEQNGVLIDTKLLDQQT 575

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTK---TGQWKTTAQ 655
           A+++     LEE  ++++GE F LSSPKQLG+ILF K+     GAK K   +G + T+ +
Sbjct: 576 AQLNTKARELEEQAFEVAGENFKLSSPKQLGEILFDKMGVVLEGAKPKKTISGNYSTSEE 635

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L ++   + P+ K  LE+R ++K+ +TY + LP  ++ +  RVHT +  A  +TGRL+S
Sbjct: 636 VLSEL-AENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFEQAVAVTGRLSS 694

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             PNLQNIPI+T+ G+K+R AFIS    KLISADYSQIELRI+AH++    L + F+N+ 
Sbjct: 695 TNPNLQNIPIRTEEGRKVREAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNE 754

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+FG   +KV+P  RR AK INF ++YG+SPF LA  L I R EA +YI ++
Sbjct: 755 DIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMYGMSPFGLAKNLGIGRDEAKNYINKF 814

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPG+H+Y+E+T+    + GYVET FGRR+   EI++   + R   ERAAINAP+QG+
Sbjct: 815 FARFPGVHDYMERTRALADRQGYVETTFGRRLWLPEIHA-GGARRAAAERAAINAPMQGT 873

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + +MI+V K +E+  L +K++LQIHDEL+ EVPE E+          + K  LPK
Sbjct: 874 AADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEV---------DLVKENLPK 924

Query: 956 I-----NLRVPLKVNIKVSNNWQ 973
           I      L VPL   + V +NW+
Sbjct: 925 IMDSVTELHVPLIAEVGVGDNWE 947


>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
 gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
          Length = 890

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 347/941 (36%), Positives = 532/941 (56%), Gaps = 67/941 (7%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           ++++  ++  +   AVIFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+
Sbjct: 1   MIRSMMRQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGL 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    A + G  V I + DKD+ QLV     L +T+    +D E 
Sbjct: 61  PLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-- 225
           VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I   
Sbjct: 121 VIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL 180

Query: 226 ----QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
                K   + + E    A+LS +L  ++ DV +    + L+ +  +   L+S    L F
Sbjct: 181 GFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAF 240

Query: 282 TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
              +  +               LD  T    GI     +  D   KTS   S++  T+  
Sbjct: 241 KSWLTEL---------------LDGGT----GI-----VTADEQTKTS---SVTVSTAAT 273

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
           ++   P+              I+   Y  I+N +D Q W++KL+     +F   TD +D 
Sbjct: 274 HAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDY 324

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             +  + ++ + + + +     V   ++D      +D          +++ LK   E+E 
Sbjct: 325 MVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDES 374

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
             K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    
Sbjct: 375 KAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISF 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDK 574
           +++    K+ +  ++I+  +  ++A E+++V L+L   + P  ++E   KL  VY  ++ 
Sbjct: 435 EQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEM 492

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P++ V+S++E TG+ ID  LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF
Sbjct: 493 PLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILF 552

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN 
Sbjct: 553 EQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINP 611

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIE
Sbjct: 612 STGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIE 671

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+AH++    L   F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S 
Sbjct: 672 LRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSA 731

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S
Sbjct: 732 FGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITS 791

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVP 933
             +  R   ERAAINAP+QG+AADI ++AM+ V + +E +     K+L+Q+HDELVFEV 
Sbjct: 792 RNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVK 851

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E  ++     +   ME A      L VPL       +NW++
Sbjct: 852 ESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQ 888


>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
 gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
          Length = 922

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/986 (35%), Positives = 530/986 (53%), Gaps = 74/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDGSS++YRAF+A P L R   G P +A  G    +  +LQ  +KE  A +
Sbjct: 1   MTRPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASAPTGAIRGMINMLQALKKEVPADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+ +YP+YK +R  +P+ L  Q+  +    +  G P + I G EADD+
Sbjct: 60  AACVFDASGPTFRDALYPEYKQHRAPMPDDLRAQIEPIHEVVRLLGWPVLCIPGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +G  V I S DKDL QLV+    + DT+  +K D+  V  ++G+PP  MV
Sbjct: 120 IGTLAATAAGQGMQVVISSGDKDLSQLVNENITIIDTMNGKKRDVAGVTAEFGVPPTLMV 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYAE 238
             QAL GD++DN+PG+P +G KTAA  L EYG+L+ +L NA  IK    +     L++  
Sbjct: 180 DYQALVGDAVDNVPGVPKVGPKTAAKWLTEYGSLDALLANAGAIKGVAGENLRGALDWLP 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           TAR+   LV ++TD  +   L+ L       P + +     E    +      Y      
Sbjct: 240 TARM---LVTIKTDCDLAGHLDGL-------PAIDAIAVGAEQADALRDFYQKYGF---- 285

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                      ++   A+ + +  D       F++       + ++Q             
Sbjct: 286 -----------KSLARALPSAVVPDAGASGDLFATPDASAVAVQAQQ------------- 321

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+  + +  W+ +L+    A+    T ++D   ++ + +         
Sbjct: 322 -----REVTYDTILTWEQLDGWLARLKAAPLAALDTETTSLDELRAEIVGV--------- 367

Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             SF VE     +I L+ H   D+  +  L  E+L  L+ + E+    K+G ++KYD+ V
Sbjct: 368 --SFSVEPGAAAYIPLA-HNGPDAPPQLPLA-EVLERLRPWLEDPACPKLGQHVKYDRHV 423

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
              +GI +RG+  D ML SYVL+     H +AS+A++    T    +++       IP  
Sbjct: 424 FANHGIQVRGYAHDTMLQSYVLEV-HKPHGLASLAERHTGRTGISYEDLCGKGAKQIPFA 482

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           ++   +   ++ E+S+  L +  +L P+L  + KL  +YE L+    + + ++E  G+ I
Sbjct: 483 QVPVDKAAAYSCEDSDQTLDVHRVLWPQLQADDKLRGIYE-LEMACSETLFRIERNGVLI 541

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L   S  + + +L LE+  Y ++G+ FNL SPKQLG+I F KL  P   KT TG  
Sbjct: 542 DAGKLAAQSHALGQRILQLEQEAYAIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGAR 601

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++   D P+   +LE R L K+K TY D L    + RT RVHT Y+ A  +T
Sbjct: 602 STDEEVLEKL-AEDYPLPAKLLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVAVT 660

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S EPNLQNIPI+T  G+++R AF++P  + + SADYSQIELRI+AHI+    L   
Sbjct: 661 GRLSSNEPNLQNIPIRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDEALLHA 720

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+S F LA  L I    AA 
Sbjct: 721 FREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAA 780

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+ +Y+E+TK   +  GYVET+FGRR++  EINSP    R   ERAAINA
Sbjct: 781 YIDRYFQRYPGVKQYMEETKARAKARGYVETVFGRRLYLPEINSPNGPRRGAAERAAINA 840

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AAD+ ++AM++V   L+  K    M++Q+HDELVFE+PE E+    + I   M  
Sbjct: 841 PMQGTAADLIKKAMVAVQGELDARKPEVLMIMQVHDELVFELPEGEVDWLRREIPRLMAG 900

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L+VPL   + V  +W + +
Sbjct: 901 VA----ALQVPLLAEVGVGPDWDKAH 922


>gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
 gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
          Length = 935

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 357/985 (36%), Positives = 553/985 (56%), Gaps = 74/985 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+DG + +YRA +A    PL++ K  G+  +AI GF   LW L++  +     +H AV
Sbjct: 6   LFLLDGHALVYRAHFAFITKPLVNSK--GVNTSAINGFTRQLWDLMRTEK----PTHIAV 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+++Y  YKANR + P+ +   +P ++   +A  IP + +QG+EADD+I T
Sbjct: 60  AFDPHGPTFRHDMYEPYKANREEQPQDISIAIPWIKKIIEAMHIPIVMVQGYEADDVIGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EK 178
               AEKEG+ V +++ DKD  QLVS    +Y   ++    E + ++ V + WGI   ++
Sbjct: 120 LAKQAEKEGYTVYMVTPDKDYGQLVSENIFMYKPSRQGNGIEIMGVKEVCENWGIKRVDQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L  L GD++DNIPGIPG+G KTAA LL  +  +E ++ N + +K K++ E + +YAE
Sbjct: 180 VIDLLGLMGDAVDNIPGIPGVGEKTAAKLLDRFDTIEGVIANVNELKGKEK-ERVEQYAE 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS+KL ++ T VPI    +  I++  N   L    K LEF  L  ++          
Sbjct: 239 QAMLSKKLAIIETQVPIQFNADQYIIDPMNREALSEIFKELEFRSLATQILG-------- 290

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E E    T     Q S   D    I    TPQK        +
Sbjct: 291 ------------------EGETRPSTPGPGQQGSLFGDTEPAI---YTPQKGANLTAHSV 329

Query: 359 SQYPINNDSYT-KIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           ++  I+N  +   +VN+ + + +   +L       F   T  ++   ++ + ++ +    
Sbjct: 330 AEKTIDNTPHEYHLVNSPEAMHKLAAELAQQSEFCFDTETTHVEPTQAELVGMSFAY--- 386

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K   ++ V                GK    + ++   +   ENE  LKI  N+KYD +V 
Sbjct: 387 KSGEAYYVPV------------PAGKEN-AQAVVEIFRPVLENEKILKIAQNLKYDAIVF 433

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPID 531
             YG+ +RG + D M+  Y+L+     H +  +A+ +LSY+       I K  K  + + 
Sbjct: 434 KWYGVEVRGPYFDTMVAHYLLEP-EMRHGMDYLAETYLSYSPISIEMLIGKKGKDQLNMS 492

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +I   +V ++A E++++ LQL  L  PKL    +  +++ ++ P+I V++ +E  GI+ID
Sbjct: 493 QIDLEKVTDYAAEDADITLQLKELFAPKLEEGGVQELFDTIECPLIKVLADLEYEGIRID 552

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQW 650
            D L   S E+   + +LE++IY+ +G KFN+ SPKQ+GD+LF +LK P  GAKTKTGQ+
Sbjct: 553 SDYLDVYSKELEIQIQTLEQSIYEQAGVKFNIGSPKQVGDLLFERLKVPYKGAKTKTGQY 612

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    L ++   + PII+ IL +R L+K+KSTY D+LP  +N RT R+H+ ++ A   T
Sbjct: 613 STDEDKLLEL-APEFPIIQTILNFRGLAKLKSTYVDALPKMVNPRTGRIHSSFNQALAAT 671

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIP++T  G K+RRAFI    +  L+SADYSQIELR++A I+    + +
Sbjct: 672 GRLSSNNPNLQNIPVRTPEGAKVRRAFIPRDDQHTLLSADYSQIELRLIADISGDVAMLE 731

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+N+ DIH   AA++F V  + V+ + R  AKT+NFSI+YG     L+ QL I R+EA 
Sbjct: 732 AFQNNQDIHTATAAKVFNVPFDLVTREQRYQAKTVNFSILYGAGATNLSRQLSIKRTEAK 791

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  + G+  Y+       R+NGYV T+ GRR +  EINS  S  R+  ER A+N
Sbjct: 792 ELIDAYFALYSGLKGYMVTVVEDARKNGYVTTLMGRRRYLREINSKSSLERSNAERVAVN 851

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            P+QGSAAD+ + AM+++H++L +  L TKM+LQ+HDELVF+VP EE+     IIV  M 
Sbjct: 852 TPVQGSAADMIKVAMVNIHQALLEQGLKTKMILQVHDELVFDVPNEELEIVKPIIVEKM- 910

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
           ++ LPK  L+VP++V +    NW E
Sbjct: 911 RSALPK--LKVPIEVGLGTGQNWLE 933


>gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
 gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
          Length = 915

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 343/986 (34%), Positives = 537/986 (54%), Gaps = 94/986 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  DG P  A+ G   M+ +L    R++  A H   +FD
Sbjct: 8   LLLVDGSSYLYRAYHALPDL-RSPDGFPTGALHGMVAMMKRL----REQVPAEHAVCVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y DYKA+RP +PE L  Q+  +    +  G P +E+ G EADD I T   
Sbjct: 63  AKGPTFRDDWYADYKAHRPSMPEPLAQQVAPIHEVVRLLGWPVLEVPGIEADDAIGTLAC 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +A++ G  V + + DKDL QLV     L +T+  E +D   V+ K+G+PP+++V    L 
Sbjct: 123 VAKRAGHRVVVSTGDKDLAQLVDEHVTLINTMSNETLDPAGVLAKFGVPPQRIVDYLTLV 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DNIPG+  +G KTA   + E+G+L+ ++  A+ IK     EN+    +     R+L
Sbjct: 183 GDAVDNIPGVEKVGPKTAVKWITEHGSLDGVMAAAATIKGVAG-ENLRRALDWLPQGRRL 241

Query: 247 VMLRTD------VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           V +  D      VP    L+ L L   +   L+ F +   F                   
Sbjct: 242 VTVACDCDLAAHVPGWPALDALALRPADEAGLLDFYRRYGF------------------- 282

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    +  G  +E ++  D    T+  +  +     +  E                
Sbjct: 283 ---------KTWGRELEGQLGGDVPAATATGTVSAAAAIDVARE---------------- 317

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  +   + +  W+++L+     +    TD+++   ++ + I           
Sbjct: 318 -------YETVTTWERLDAWLERLQAAELVAIDTETDSLEPMKARIVGI----------- 359

Query: 421 SFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           SF VE     ++ L+ H   D+  +  L   +L+ LK + E+    K+G N+KYD+ V  
Sbjct: 360 SFAVEPGRGAYVPLA-HAGPDAPEQLPLDA-VLARLKPWLEDASRAKLGQNLKYDRHVFA 417

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-----KWLSYTRKEILKSRKSSIPID 531
             GI++ G   D ML SYVL++    H + S+A+     K LSY  +++     + IP  
Sbjct: 418 NAGIALAGVRHDTMLESYVLEA-HKPHSLESLAERHLGRKGLSY--EDLCGKGVNQIPFA 474

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590
           ++  ++  E++ E+S + L +  +L P++  +  L  VYE ++ P+ +V++++E  G+ +
Sbjct: 475 QVDVARATEYSAEDSEMALHVHQVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLV 534

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L + S ++++ +++LE+ +Y ++ + FNL SPKQ+G+ILF KL  P   +T +G  
Sbjct: 535 DPQELARQSRDLAERMVALEQEVYAIAEQPFNLGSPKQIGEILFGKLGLPVKKRTASGA- 593

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +T +D+      D P+   ILE R L+K+K TY D LP  +N  T RVHT Y+ A  +T
Sbjct: 594 PSTDEDVLTELAADYPLPARILEHRSLAKLKGTYTDKLPAMVNPATGRVHTNYAQAVAVT 653

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS EPNLQNIPI+T  G+++RRAF++PP   ++SADYSQIELRI+AHI++   L + 
Sbjct: 654 GRLASNEPNLQNIPIRTPEGRRVRRAFVAPPGHVILSADYSQIELRIMAHISEDEGLLRA 713

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LD+HR  AAE+FG+ + +V+ + RR+AK INF +IYG+  + LA  L I +  A D
Sbjct: 714 FSEGLDVHRATAAEVFGMPLAEVTSEQRRYAKVINFGLIYGMGAYGLAANLGIEQKAAKD 773

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF RF G+  Y+++T+   ++ GYVET+FGRR+   EINS     R+  ER AINA
Sbjct: 774 YIDRYFARFAGVKRYMDETRVRAKEKGYVETVFGRRLWLPEINSGNGPRRSGAERQAINA 833

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AAD+ + AMI+V K L+    AT+M++Q+HDELV EVPE E+  A   I   M  
Sbjct: 834 PMQGTAADLIKLAMIAVQKELDASGRATRMVMQVHDELVLEVPEAELDWAKDAIPRLMAG 893

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L+VPL   + V  NW E +
Sbjct: 894 VA----ALKVPLLAEVGVGANWDEAH 915


>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2]
 gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
          Length = 886

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 346/935 (37%), Positives = 529/935 (56%), Gaps = 67/935 (7%)

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           ++  +   AVIFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+
Sbjct: 3   RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIE 62

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+I T    A + G  V I + DKD+ QLV     L +T+    +D E VI+K+G
Sbjct: 63  GVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFG 122

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QK 227
           IPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K
Sbjct: 123 IPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSK 182

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
              + + E  + A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  
Sbjct: 183 TMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTE 242

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +               LD  T    G+     +  D   KTS   S++  T+  ++   P
Sbjct: 243 L---------------LDGGT----GV-----VTADEQTKTS---SVTVSTAASHAAAIP 275

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           +              I+   Y  I+N +D Q W++KL+     +F   TD +D   +  +
Sbjct: 276 ES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLV 326

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            ++ + + + +     V   ++D      +D          +++ LK   E+E   K+G 
Sbjct: 327 GMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQ 376

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++   
Sbjct: 377 NLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGK 436

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVV 580
            K+ +  ++I+  +  ++A E+++V L+L   + P  ++E   KL  VY  ++ P++ V+
Sbjct: 437 GKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVL 494

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           S++E TG+ ID  LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P
Sbjct: 495 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLP 554

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KT +G   T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVH
Sbjct: 555 VLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVH 613

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH
Sbjct: 614 TSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAH 673

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA Q
Sbjct: 674 LSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQ 733

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R
Sbjct: 734 LGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRR 793

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITT 939
              ERAAINAP+QG+AADI ++AM+ V + +E +     K+L+Q+HDELVFEV E  ++ 
Sbjct: 794 KAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSE 853

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +   ME A      L VPL  +    +NW +
Sbjct: 854 IESKVQQLMESAA----ELAVPLVADAGHGDNWDQ 884


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 358/992 (36%), Positives = 543/992 (54%), Gaps = 108/992 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS++YRAF+A P L+   DG P NA  G  +M+  L+    +  I     VIFD
Sbjct: 10  MVLVDGSSYLYRAFHAIPPLTTS-DGQPTNAARGVISMIRSLIGKYPESPIV----VIFD 64

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EIY +YKA RP +P+ L  Q+  +    +A G+P + I+G EADD+I T   
Sbjct: 65  AKGKTFRDEIYSEYKAQRPPMPDDLRLQIEPIHRMIEAMGLPLVIIEGVEADDVIGTIAK 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              + G  V + + DKD+ QLV+    L +T+ +  +DI  V  K+GIPPE ++   AL 
Sbjct: 125 QVGEAGRDVIVSTGDKDMAQLVTDKVTLVNTMTDTVMDIAGVKDKFGIPPELIIDYLALM 184

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENIL----------INASRIKQKKRRENILEY 236
           GD +DNIPG+PG+G KTA  LLQ  G++++I              S+   KK  +N    
Sbjct: 185 GDKVDNIPGVPGVGEKTALALLQGIGSIKDIYERLDDIAPLGFRGSKTMSKKMEDN---- 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-------- 288
            + A LS  L  ++ DV +   +  L  E  N   L  + + LEF   +  +        
Sbjct: 241 RDMAELSYTLATIKCDVELPFDMHALKNEPANKEVLREWFQKLEFKTWLRDIDKAPMAAG 300

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
            T  D D     P V DI            E+  +T +  SQF+                
Sbjct: 301 TTVNDSDEGEDTPAVSDI------------EVQYETVLDKSQFN---------------- 332

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
                                         QW+++L      +F   T +++   ++ + 
Sbjct: 333 ------------------------------QWLEQLNQAELVAFDTETTSLNYMQAELVG 362

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGH 467
           ++++    K          +I ++ H  +D+     L ++ +L  LK + E+E   K+G 
Sbjct: 363 VSVAIEAGK--------AAYIPVA-HDYEDAP--EQLDRDWVLEQLKPWLEDEGKAKVGQ 411

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           ++KYD  VL+ Y I++RG + D ML SYV +S  + HD+ S++ K+L ++    ++I   
Sbjct: 412 HLKYDANVLNNYDITLRGIKFDTMLESYVFNSTGTRHDMDSLSSKFLGHSTVKFEDIAGK 471

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQ 582
                  ++I   Q   +A E++++ L+L   + PKL    +L+ V+  ++ P++ V+++
Sbjct: 472 GAKQKTFNQIDLEQAAFYAAEDADITLRLHQAILPKLEKTPELVSVFSDIELPLVPVLAK 531

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME TG  ID D L   SAEI+  L  +E   ++ +G++FNLSSPKQL +ILF K   P  
Sbjct: 532 MEQTGALIDPDRLHAQSAEIASRLQEVEIKAHEEAGQEFNLSSPKQLQEILFEKQGLPVI 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  GQ  +TA+ + Q    +  + + I+E R L+K+KSTY D LP  I + T R+HT 
Sbjct: 592 KKTPKGQ-PSTAEPILQELAENYELPRLIMEHRSLAKLKSTYTDKLPEMI-QHTGRIHTS 649

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A T TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH++
Sbjct: 650 YHQAVTATGRLSSTDPNLQNIPIRTQEGRRIRQAFVAPEGHKLVAADYSQIELRIMAHLS 709

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F +  D+H+  AAE+F V ++ V+ + RR AK INF +IYG+S F LA QL 
Sbjct: 710 QDKGLLDAFAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAINFGLIYGMSAFGLAKQLG 769

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R EA  Y++RYF R+PG+  Y+E T+   ++ GYVETIFGRR++  EI +  + +R  
Sbjct: 770 ISRPEAQKYVQRYFERYPGVRTYMETTRENAKEKGYVETIFGRRLYLPEIKARNAMMRQA 829

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QGSAADI +RAMI +H  L D  L  KM++Q+HDEL+FEV E+++  A  
Sbjct: 830 AERTAINAPMQGSAADIIKRAMIKMHNWLADTDLGVKMIMQVHDELIFEVAEKDLEAAQA 889

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I+  M+ +      + VPL V   V +NW E
Sbjct: 890 KIIDIMQNST----EIDVPLLVEAGVGDNWDE 917


>gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1]
 gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1]
          Length = 915

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 356/988 (36%), Positives = 530/988 (53%), Gaps = 100/988 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +   G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +   A R   K     + E+ +
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPTLAIR-GAKTLPAKLEEHRD 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ + +E L+  + +   L++    +EF   +             
Sbjct: 240 AAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWV------------- 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E+ RD            +  +K+  +              
Sbjct: 287 -------------------AEVQRDAAKAGDDVGPAVEPAAKVEPK-------------- 313

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I++      W++KL      +F   T  +DA  ++ + +         
Sbjct: 314 ---------YETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGL--------- 355

Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNT-LTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
             SF VE     ++ L+     D  G    L +E +L  LK   E+    K+G N KYD 
Sbjct: 356 --SFAVEPHEAAYVPLA----HDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDI 409

Query: 474 LVLHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527
            +L      I MRG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I       
Sbjct: 410 NILANGSPPIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQ 469

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEIT 586
           +  ++I+  +   +A E++++ L+L   L+ +L     +  V   ++ P++ V++++E  
Sbjct: 470 LTFNQITLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQ 529

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G  +D +LLK  S E+   +  LE   Y+L+GE FNL SPKQLG IL+ KL  P  +KT 
Sbjct: 530 GALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTA 589

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            GQ  T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A
Sbjct: 590 KGQPSTAEAVLDELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQA 649

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   
Sbjct: 650 VAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEG 709

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F N LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R 
Sbjct: 710 LLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRK 769

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           ++ DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER 
Sbjct: 770 QSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERT 829

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AADI +RAM+ V   L +  L  +++LQ+HDELV EV E+ +      I  
Sbjct: 830 AINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQ 889

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M +A      L VPL V   V  NW E
Sbjct: 890 HMSQAA----QLDVPLLVEAGVGANWDE 913


>gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 884

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 342/927 (36%), Positives = 524/927 (56%), Gaps = 67/927 (7%)

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EAD
Sbjct: 12  THAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 71

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE 
Sbjct: 72  DVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPEL 131

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRREN 232
           ++   AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     
Sbjct: 132 IIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAK 191

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + +  E A LS +L  ++TDV + +  E L ++      L+   K  EF + I  V    
Sbjct: 192 LEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWIADVEAGK 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              A   +P                            Q +S++D+  ++ +         
Sbjct: 252 WLQAKGAKPAA------------------------KPQETSVADEAPEVTATV------- 280

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                     I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +
Sbjct: 281 ----------ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA 330

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            ++        V   ++D     S++           L  LK   E+E  LK+G N+KYD
Sbjct: 331 -IEPGVAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYD 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           + +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +
Sbjct: 381 RGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQL 440

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITG 587
             ++I+  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G
Sbjct: 441 TFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNG 500

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           ++ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  
Sbjct: 501 VKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPG 560

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A 
Sbjct: 561 GAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV 619

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L
Sbjct: 620 TATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 679

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR E
Sbjct: 680 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 739

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAA
Sbjct: 740 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAA 799

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H 
Sbjct: 800 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQ 858

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           + + C     L VPL V +    NW +
Sbjct: 859 LMENC---TRLDVPLLVEVGSGENWDQ 882


>gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
 gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
          Length = 936

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 352/989 (35%), Positives = 538/989 (54%), Gaps = 66/989 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRAF+A P L R   G   +A  G    +  +LQ  RKE  A++
Sbjct: 1   MTDPKTLVLVDGSSYLYRAFHALPDL-RVVPGDARSAATGAIRGMINMLQALRKERPANY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+ IYP+YKA R  +PE L  Q+       +  G P + I G EADD+
Sbjct: 60  AACVFDASGPTFRDSIYPEYKARRAPMPEDLRAQIAPTHEVVRLLGWPVLAIAGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +G  V + S DKDL QLV+    + DT+  +K D+  V  ++G+PP+ MV
Sbjct: 120 IGTLAVTAAAQGMQVLVSSGDKDLSQLVNQHITIVDTMSGKKRDVAGVTAEFGVPPQLMV 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             Q L GD++DN+PG+P +G KTAA  LQEYG+L+ +L +A  IK     EN+       
Sbjct: 180 DYQTLMGDAVDNVPGVPKVGPKTAAKWLQEYGSLDALLAHAHEIK-GVVGENLRGAIGWL 238

Query: 241 RLSRKLVMLRTD------VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              R+LV +RTD      VP    L+ L +     P L +F +   F  L   +      
Sbjct: 239 PTGRQLVTIRTDCDLAAHVPGLPALDALAMGAPQVPGLRAFYEKYGFKGLARALQ----- 293

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
              +  P  L ++       A     D    +        +D  +               
Sbjct: 294 ---DPAPPALPLSGATGDLFA-----DPAADVPVPVPGHGADPPAS-------------- 331

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                Q+P+    Y  I+N +D +QW+Q+L+     +    TD++D   ++ + I++S  
Sbjct: 332 --AARQHPVQ---YESILNWQDFEQWLQRLQQADLVALDTETDSLDEMRAQIVGISLSVQ 386

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                        +I L  H+  D+  +  +  ++L+ LK + E+    K+G +IKYD+ 
Sbjct: 387 PGA--------AAYIPLQ-HSGPDAPAQLPI-GQVLARLKPWLEDGRRHKLGQHIKYDRH 436

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ-----KWLSYTRKEILKSRKSSI 528
           V   +GI ++G+  D ML SYVL+     H++ S+A+     K +SY  +++       +
Sbjct: 437 VFANHGIEVQGYVHDTMLQSYVLEV-HKPHNLGSLAERHTGRKGISY--EDLCGKGAHQL 493

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
           P  ++   +   ++ E++++ L +   L P+L   ++L  +YE L+    + + ++E  G
Sbjct: 494 PFAQVPVDKAAAYSCEDADLTLNVHQTLWPQLQAHDRLRFIYE-LEIASSEALYRIERNG 552

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID   L Q S E+ + +  L+ + Y L+G+ FNLSSPKQLG+I F KL  P   KT T
Sbjct: 553 VLIDAPTLAQQSHELGQRIEQLQADAYALAGQPFNLSSPKQLGEIFFDKLGMPVVKKTAT 612

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   + P+   +LE R L K+K TY D L      RT RVHT Y+ A 
Sbjct: 613 GARSTDEEVLEKL-AENYPLPAKLLEHRGLIKLKGTYTDKLTQLALPRTGRVHTHYAQAV 671

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRL+S +PNLQNIPI+T  G+++R AF++P    + SADYSQIELRI+AH++    L
Sbjct: 672 AVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGCVIASADYSQIELRIMAHLSDDQAL 731

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F   LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+  F LA  L +    
Sbjct: 732 LHAFHAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMGSFGLAKNLGLENKA 791

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA YI RYF R+PG+ +Y+++T+   + NGYVET+FGRR++  EINSP    R+  ER+A
Sbjct: 792 AAAYIDRYFQRYPGVKQYMDQTRAAAKSNGYVETVFGRRLYLPEINSPNGPRRSGAERSA 851

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AAD+ + AM++V K L+  + A +M++Q+HDELVFE+P   +      +   
Sbjct: 852 INAPMQGTAADLIKMAMVAVQKELDAQQPAIRMIMQVHDELVFELPGNAVDWLRTHVPRL 911

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M +       L+VPL   + V  NW++ +
Sbjct: 912 MAEVA----TLKVPLLAEVGVGPNWEQAH 936


>gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158]
          Length = 891

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 349/947 (36%), Positives = 528/947 (55%), Gaps = 72/947 (7%)

Query: 40  GFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
           G  NML  LL   +     SH AV+FD    TFR+E++ +YK++RP +P+ L  Q+  + 
Sbjct: 3   GVLNMLRSLLLQYKP----SHVAVVFDAKGKTFRDELFEEYKSHRPPMPDDLRAQIEPLH 58

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
              +A G+P + I G EADD+I T    AEK G AV I + DKD+ QLV+P   L +T+ 
Sbjct: 59  KMVKAMGLPLLAIPGVEADDVIGTLALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMN 118

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
              +  + V++K+GIPP  M+   AL GDS DNIPG+ G+G KTA  LLQ  G +++I  
Sbjct: 119 NAILGPDEVVEKYGIPPSLMIDFLALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKDIYA 178

Query: 220 NASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
           N  ++        K     + +  E A LS +L  ++TDV + +  + L +E      L+
Sbjct: 179 NLDKVATLTFRGAKTMAAKLEQNKEMALLSYQLATIKTDVELELNSDQLTVEQPAVEELL 238

Query: 274 SFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
           +  K  EF + I  +      D   ++          NKG              T + ++
Sbjct: 239 ALFKHYEFKRWITDLE-----DGKWLQ---------GNKG-----------NPSTKKVAA 273

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
           + D+ +   +                   +++D Y  I++ +    W++KL+     +F 
Sbjct: 274 VQDEPAVAEAASV----------------LSSDGYVTILDEETFTSWLKKLQHSELFAFD 317

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           + TD++D   +  I I+ +T    +     V   ++D      +          ++L+ L
Sbjct: 318 LETDSLDTLSANIIGISFATA-PGEAAYLPVAHDYLDAPEQLDR---------SDVLARL 367

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW 512
           K   E+    K+G N+K+D+ VL RY I + G   D ML SY L+S    HD+ ++A +W
Sbjct: 368 KPLLEDPQSQKVGQNLKFDRGVLKRYDIELLGIRFDTMLESYALNSVAGRHDMDTLASRW 427

Query: 513 LSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHV 568
           L +   T +EI    K+ +  ++I+  Q   +A E+++V LQL L + P+L  E+   +V
Sbjct: 428 LQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKEQGPKNV 487

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           +E+++ P++ V+S++E  G+ IDQ +L   S E+   L  LE   ++L+GE FNLSSPKQ
Sbjct: 488 FEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELELKAHELAGEPFNLSSPKQ 547

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           L  ILF K       KT  G   T+ + L ++   D P+ K ILE R L+K+KSTY D L
Sbjct: 548 LQTILFEKQGIKPTKKTPGGAPSTSEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKL 606

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  IN  + RVHT Y    T TGRL+S +PNLQNIP++ D G++IR+AFI+P   ++++A
Sbjct: 607 PLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRILAA 666

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRI+AH+++   L   F +  DIHR  AAE+FGV ++KVS + RR AK INF +
Sbjct: 667 DYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGL 726

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+S F L+ QL I   EA  Y+  YF R+PG+ +Y+E T+    Q GYV T+ GRR++
Sbjct: 727 IYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLY 786

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDE 927
             +IN+  +  R   ERAAINAP+QG+AADI +RAMI+V   LE       KM++Q+HDE
Sbjct: 787 LPDINASNAMRRKAAERAAINAPMQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQVHDE 846

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LVFEV  + +  A   I   ME +    + L VPL+V+I V +NW +
Sbjct: 847 LVFEVQADAVEAACAQIRALMEGS----MKLDVPLRVDIGVGDNWDQ 889


>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c]
 gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c]
          Length = 923

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 352/980 (35%), Positives = 533/980 (54%), Gaps = 70/980 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+         + A + D
Sbjct: 4   LVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVID 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+ +  +YK +RP +P+ L  Q+  +    QA GI  + I G EADD+I T   
Sbjct: 58  APGKTFRDALDSEYKMHRPPMPDDLRVQVEPMCGIVQALGIDILCIDGVEADDVIGTLAL 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQAL 185
            A  +G AVTI + DKD  QLV P   L +T+   ++D    VI K+G+ P++++   AL
Sbjct: 118 AAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLAL 177

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD++DN+PG+   G KTAA  L EYG+L+ ++ NA +IK K   +N+        L+R 
Sbjct: 178 MGDAVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIG-DNLRVVLPRLLLNRA 236

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L+ ++TDV +    + L L + +   L  F +   FT+ +       + D  ++   V +
Sbjct: 237 LITIKTDVVLEKCPQDLALRERDTEALRGFYQRYGFTQALK------ELDGGSVAVTVAE 290

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 +        D    ++ +   S   +                            
Sbjct: 291 QEPGRGRNAGFHVAPDASVAMEINPALSAPGE---------------------------- 322

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  I   + +Q W+ +L   G  +    TD++D   +  I +           SF  E
Sbjct: 323 --YETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGL-----------SFAAE 369

Query: 426 TIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +     +    D  G          L+ L+   E+    K+G + KYD  VL RYGI +
Sbjct: 370 -VGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVL 428

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRK--EILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL SG + HD+ ++A++ L Y T K  +++      IP   +   +  
Sbjct: 429 AGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEAT 488

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L PKL+ E  L  VY  ++ P++ V+ ++E  G+QID + L + 
Sbjct: 489 RYAAEDADITLRLHCVLAPKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQ 548

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++S+ ++  ++   DL+G  FNL SPKQL  +LF +LK P   KT  GQ  T  + LE
Sbjct: 549 SADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALE 608

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            I    + + + ILE+R L+K+++TY + LP  I+  T RVHT Y  A   TGRL+S +P
Sbjct: 609 AI-VDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDP 667

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+TD G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+ +D+H
Sbjct: 668 NLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVH 727

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             +AAE+FG  I++V+   RR AK INF +IYG+S F LA QL I R EA DYI  YF R
Sbjct: 728 CAIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDR 787

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+ +++E T+   R  GYVET+FGRR++ + I S   + R   ERAAINAP+QG+AAD
Sbjct: 788 FAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAAD 847

Query: 899 ITRRAMISVHK--SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           I +RAM++V     +  H+    M+LQ+HDELVFE  E  + T    +VH +        
Sbjct: 848 IIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT----LVHEVSARMAAAA 903

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL V++ V ++W E +
Sbjct: 904 QLRVPLVVDVGVGHHWDEAH 923


>gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii SDF]
 gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii]
          Length = 923

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 353/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A KEG  V I + DKD+ QLV+    L D+ K+  +  + V +K+G+ P +++    L 
Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLGTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +      
Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +     ++ E+    TI+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A       Q+ D       
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                               +++L+ +K   ENE   KIGH++KYD  +   +GI ++G 
Sbjct: 398 --------------------EQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S E
Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I 
Sbjct: 558 FAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 617 --EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR  
Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+PG
Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYPG 794

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V K L   K   K+LLQ+HDELVFEV        S+ I   M+      + + VP
Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISVP 908

Query: 962 LKVNIKVSNNWQE 974
           L V +   NNW +
Sbjct: 909 LVVEVGQGNNWDD 921


>gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327]
          Length = 884

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 341/927 (36%), Positives = 524/927 (56%), Gaps = 67/927 (7%)

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EAD
Sbjct: 12  THAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 71

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE 
Sbjct: 72  DVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPEL 131

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRREN 232
           ++   AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     
Sbjct: 132 IIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAK 191

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + +  E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V    
Sbjct: 192 LEQNKEVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGK 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              A   +P                            Q +S++D+  ++ +         
Sbjct: 252 WLQAKGAKPAA------------------------RPQETSVADEAPEVTATV------- 280

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                     I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +
Sbjct: 281 ----------ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA 330

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            ++        V   ++D     S++           L  LK   E+E  LK+G N+KYD
Sbjct: 331 -IEPGVAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYD 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           + +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +
Sbjct: 381 RGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQL 440

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITG 587
             ++I+  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G
Sbjct: 441 TFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNG 500

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           ++ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  
Sbjct: 501 VKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPG 560

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A 
Sbjct: 561 GAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV 619

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L
Sbjct: 620 TATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 679

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR E
Sbjct: 680 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 739

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAA
Sbjct: 740 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAA 799

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H 
Sbjct: 800 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQ 858

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           + + C     L VPL V +    NW +
Sbjct: 859 LMENC---TRLDVPLLVEVGSGENWDQ 882


>gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51]
 gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51]
          Length = 915

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 349/984 (35%), Positives = 534/984 (54%), Gaps = 92/984 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +   G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL  +   A R   K     + E+ +
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLGKVPALAIR-GAKTLPAKLEEHRD 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ + +E L+  + +   L++    +EF   +             
Sbjct: 240 AAFLSYELATIKVDVPLDVEVEALVCGEPDRDALLALYTEMEFKSWV------------- 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               ++ R+        + +++  +K+  +              
Sbjct: 287 -------------------ADVQREAARVGDDVAPVAEPVAKVEPK-------------- 313

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I++      W++KL      +F   T  +DA  ++ + ++ +      
Sbjct: 314 ---------YETILDQTRFDAWLEKLRQAPLFAFDTETTGLDAQKAQLVGLSFAVAPH-- 362

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  ++ L+ H  + +  +  L ++ +L  LK   E+    K+G N KYD  +L 
Sbjct: 363 ------EAAYVPLA-HDYEGAPAQ--LDRDAVLLALKPLLEDPAKAKVGQNAKYDINILA 413

Query: 478 RY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
                I+MRG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I       +  +
Sbjct: 414 NGSPAIAMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFN 473

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   +   +A E++++ L+L   L+ +L     L  V   ++ P++ V++++E  G  +
Sbjct: 474 QIDLDKAGPYAAEDADITLRLHHALQARLAQTPSLQPVLMDIEMPLVPVLAKIERQGALV 533

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S E+ + +  LE   Y+L+GE+FNL SPKQLG IL+ KL  P  +KT  GQ 
Sbjct: 534 DAALLHVQSGELGEKMAELERRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTAKGQP 593

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A   T
Sbjct: 594 STAEAVLDELAELGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAAT 653

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   L   
Sbjct: 654 GRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHA 713

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R ++ D
Sbjct: 714 FRNDLDVHRATAAEVFGVALENVTVDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQSQD 773

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER AINA
Sbjct: 774 YIDRYFARYPGVLAYMERTRTQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINA 833

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI +RAM++V   L +  L  +++LQ+HDELV EV E+ +      I   M K
Sbjct: 834 PMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQHMSK 893

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L VPL V   +  NW E
Sbjct: 894 AA----QLDVPLLVEAGIGANWDE 913


>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
 gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
          Length = 962

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 361/996 (36%), Positives = 545/996 (54%), Gaps = 66/996 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+    L+    G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHVFNYLTNS-GGEPTGAMYGVLNMLRSLVNQVNP----SHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDDLFEQYKSHRPPMPDELRAQIQPLHNIIRALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV+    L +T+ +  +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAAQDGKEVLISTGDKDMAQLVNQHIMLINTMNDSLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+ GIG KTA  LLQ  G+L+ I  N  R+        K     ++   
Sbjct: 181 ALQGDASDNIPGVKGIGEKTALALLQGIGSLQTIYANLDRVATLSVRGAKTLATKLVAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +    L         LI+  +  EF + +N V         
Sbjct: 241 QAADLSYLLATIKTDVALDMTHHQLTPSAQRREELIALFERYEFKRWLNDVMN------- 293

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           +I P++ +++  + K     T ++  T ++  Q +              P K       K
Sbjct: 294 DINPILKNVSDNDKK-----TTLNHSTDLQAVQNTVFD----------VPNK-------K 331

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++   I+   Y  I     + +W+ K+E     +    TD +DA  +  + I+ S  + +
Sbjct: 332 IATVKIDRSQYQTITTELQLTEWMAKIEQAKLVAVDTETDNVDAMSAHLVGISFSLSNGE 391

Query: 418 -------DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE------ILSYLKKFFENEHFLK 464
                        V+    DL   T  D+  +  L          L+ LK   EN    K
Sbjct: 392 ACYIPLAHTQQISVQPQQEDLFAETDNDAITQFQLASNQLNLTACLAQLKPLLENVEIKK 451

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KE 519
           +G NIKYD  V   +GI ++G   D ML SY L+S GR  H++  +A+++L +     ++
Sbjct: 452 VGQNIKYDLTVFANHGIELQGVAFDTMLESYTLNSTGR--HNMDELAERYLDHKTIAFED 509

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMID 578
           I    K+ +  DKI+     E+A E++++ ++L   L   L     L+ ++  ++ P+++
Sbjct: 510 IAGKGKNQLTFDKIAIETATEYAAEDADITMKLHQQLITSLAKTPSLIKLFNEIEMPLVN 569

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V++++E  G+ ID D L   S E+ + L  +E  ++  +G+ FNL+S KQL +ILF KL 
Sbjct: 570 VLARVEQNGVLIDSDKLLAQSKEMEQRLAEVEIAVHTAAGQAFNLASTKQLQEILFEKLA 629

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + LEQ+    + + K + E R LSK+KSTY D LP  IN+ T R
Sbjct: 630 LPVLKKTPKGAPSTNEEVLEQLAQQGHLVPKLLSEHRALSKLKSTYTDKLPKMINQHTGR 689

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+T+ G++IR+AFI+    K+++ADYSQIELRI+
Sbjct: 690 VHTSYHQAVTTTGRLSSSDPNLQNIPIRTEAGRRIRQAFIARDGYKIVAADYSQIELRIM 749

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    +   F N  DIH+  AAEIFG+++ +V+ + RR AK INF +IYG+S F LA
Sbjct: 750 AHLANDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQRRSAKAINFGLIYGMSDFGLA 809

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R EA +Y+ RYF R+P + +++   +      GYVET+FGRR++  EI S  + 
Sbjct: 810 NQLAISRDEAKEYMARYFQRYPNVQQFMRDIRESASVKGYVETLFGRRLYLPEIKSNNAI 869

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMIS+ K +   +   KM++Q+HDEL+FEV +E I 
Sbjct: 870 RRKAAERLAINAPMQGTAADIIKIAMISIDKQIRADQ-NIKMIMQVHDELIFEVKQECIE 928

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + +I   MEKA    I ++VPL   + V  NW E
Sbjct: 929 YYTGLIKTEMEKA----IAMKVPLIAEVGVGANWDE 960


>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
 gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
          Length = 949

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 352/998 (35%), Positives = 556/998 (55%), Gaps = 75/998 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFL+D  + I+R +YA    P ++ K  G+  +AI GF N L  +++  + +  
Sbjct: 1   MSTQKRLFLLDAYALIFRGYYAFIKNPRINSK--GMDTSAIMGFMNSLLDVIKREKPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E++ +YKANR + PE +   +P ++   +A  IP IE+ G EA
Sbjct: 57  --HLAVAFDKEGSRARTEMFAEYKANRDETPEAIKIAVPYIQELLKAMHIPIIELAGCEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DD+I T    AEK+ + V +++ DKD  QLVS    +Y   +     + + I+ WG+P  
Sbjct: 115 DDLIGTIAKQAEKQNYKVYMVTPDKDFAQLVSENIFMYKPAR-----MGNGIEIWGVPEV 169

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   PE+++    + GD++DNIPG+PG+G  TA   L+E+G++EN+L N  ++K  
Sbjct: 170 LAKFEVERPEQVIDFLGMMGDAVDNIPGLPGVGEVTAKKFLKEFGSMENLLANTDKLK-G 228

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +ENI    +   LS+KL  +  D  +    +   L   +  +  +  + LEF ++  +
Sbjct: 229 KMKENIEANKDKGILSKKLAAIMCDCDVVFNEDDYELSRPDIEKTDAIFQELEFRRMAEQ 288

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKT-SQFSSLSDQTSKIN-SEQ 345
               +   A           +      A + ++ +    K   QF       + ++ + +
Sbjct: 289 FDNLFKVGAG----------SESGSTPAQDAKLYKKPQPKNEDQFDLFGGGGTTLDENAE 338

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
             +  F   L+          SY  +     I+  +Q L+   S  F   T  +DA H++
Sbjct: 339 AARNSFYNTLENTEH------SYQTVQGDLGIKLLLQNLQKQTSVCFDTETTGIDALHAE 392

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + ++ S    K   +F V           SQ+        K ++     FFENE+  KI
Sbjct: 393 LVGMSFSYEKGK---AFYV-------PFPESQEEA------KVLIDKFVPFFENENIEKI 436

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---- 520
           G N+KYD  +L  YG++++G   D M+  Y+++     H++  +A+ +L Y+ K I    
Sbjct: 437 GQNLKYDLKILSNYGVTVKGKLFDTMIAHYLINPDMR-HNMDILAETYLKYSPKSIETLI 495

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K  K+ + +  +    ++E+A E+++V LQL  +   +L   +   +++ ++ P++ V+
Sbjct: 496 GKKGKNQLSMRDVPLEDIKEYAAEDADVTLQLKEIFTAELEKTETKKLFDEIEIPLVSVL 555

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           + ME  GI++D + LKQ+S E+   + SLEE IY+ +GEKFNL+SPKQLGDILF KLK  
Sbjct: 556 ADMETEGIRLDVEFLKQMSKEMDVEIKSLEEQIYETAGEKFNLASPKQLGDILFDKLKI- 614

Query: 641 SGAK---TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            GAK   TKTGQ+ T  + L  +   DNPI+K IL+WRQ+ K++STY  +LP  ++K+T 
Sbjct: 615 GGAKQKKTKTGQYATGEEVLTYL-ANDNPIVKQILDWRQMVKLQSTYILALPEQVDKKTL 673

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELR 756
           RVHT Y      TGRL+S  PNLQNIPI+T+ G++IR+AF++      LISADYSQIELR
Sbjct: 674 RVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQIRKAFVARDENYTLISADYSQIELR 733

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+A ++    +   F+N  DIHR  AA++F V +E+VS + R +AKT+NF IIYG+S F 
Sbjct: 734 IIAALSGEENMIAAFQNGEDIHRATAAKVFDVALEEVSREQRSNAKTVNFGIIYGVSAFG 793

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ Q  + RSE+A  I  Y+  +P +  YI +  +F R+ GYV+TI GRR +  +INS  
Sbjct: 794 LSNQTSLSRSESAALIDAYYKTYPRLKSYISEQVDFAREKGYVQTILGRRRYLKDINSAN 853

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           + +R+  ER A+NAPIQGSAAD+ + AMI++HK L +    +KMLLQ+HDELVF+V  +E
Sbjct: 854 AVVRSAAERNAVNAPIQGSAADVIKIAMINIHKKLREENWKSKMLLQVHDELVFDVHNDE 913

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +     +I H ME A      + VPL+V + +  +W E
Sbjct: 914 LEKIQPMIKHEMENA----FKMSVPLEVELGLGKDWLE 947


>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
 gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
 gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Acinetobacter baumannii ACICU]
 gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
 gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
 gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
          Length = 923

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 353/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +      
Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +     ++ E+    TI+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A       Q+ D       
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                               +++L+ +K   ENE   KIGH++KYD  +   +GI ++G 
Sbjct: 398 --------------------EQVLAQIKPILENEAVKKIGHHLKYDAHIFANHGIELKGW 437

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S E
Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I 
Sbjct: 558 FAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 617 --EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR  
Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+PG
Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYPG 794

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V K L   K   K+LLQ+HDELVFEV        S+ I   M+      + + VP
Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISVP 908

Query: 962 LKVNIKVSNNWQE 974
           L V +    NW +
Sbjct: 909 LVVEVGQGKNWDD 921


>gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp]
 gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp]
          Length = 931

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 358/983 (36%), Positives = 542/983 (55%), Gaps = 74/983 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDELFAEYKANRPSMPDELRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +   V I + DKD+ QLV P   L +T+     D   V +K+G+ PE ++   AL 
Sbjct: 121 QAAAQQRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDEGGVKEKFGVGPELIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +     R   K     + E+ E
Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLVGVGGGLDVLYANLDKVPELPIR-GAKSLPAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++TDVP+ I ++ L   + +   L+     LEF   ++ +       AA 
Sbjct: 240 MAYLSYQLATIKTDVPLNIEIDSLHPGEPDQATLVQLYGELEFKAWLDELLRQNKALAAK 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                 D+   E  G A E                         + +TP           
Sbjct: 300 AAVPAGDL-FAEPAGPAAE------------------------ETAETP----------- 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
              P+    Y  ++       W++KL+     +F   T ++DA  ++ + ++ + +   +
Sbjct: 324 ---PMGAGDYELVLEQAQFDAWLKKLQQAELIAFDSETTSIDAQQAQLVGLSFA-VKAGE 379

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + KYD  VL  
Sbjct: 380 AAYVPLAHSYMGVPQQLDRDA---------VLKALKPILEDPAKAKVGQHAKYDINVLAN 430

Query: 479 YG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT--RKEILKSRKS-SIPIDK 532
               I+++G   D ML SYVLDS  + HD+ S+A K+L ++  R E +  R +  +  D+
Sbjct: 431 ASTPIAVQGVAFDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGRGAKQLTFDQ 490

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I+  Q   +A E+++V L+L   L  +L  V  L  V   ++ P++ V++++E  G  +D
Sbjct: 491 IALEQAGPYAAEDADVTLRLHQELWGRLEAVPSLAKVLREIEIPLVPVLARIERNGALVD 550

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LL + S E+ + L+ LE   ++++GE+FNL+SPKQLG IL+ KL +P  +KT  GQ  
Sbjct: 551 AKLLGEQSVELGEKLVELERKAFEIAGEEFNLASPKQLGVILYEKLGYPVISKTAKGQPS 610

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    L ++   D  + K ++++R LSK+KSTY D LP  IN RT R+HT Y  A   TG
Sbjct: 611 TAEAVLAELAEQDFELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVAATG 670

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+T  G++IR+AF++P   K+++ADYSQIELRI+AH+AK   L   F
Sbjct: 671 RLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKMMAADYSQIELRIMAHLAKDEGLLDAF 730

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            + LD+H+  AAE+FGV +E+V+   RR AK INF +IYG+S F LA Q+ + R EA  Y
Sbjct: 731 RHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVERKEAQAY 790

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF R+PG+  Y+E+T+    + GYVET+FGRR++  EI++   ++R   ERAAINAP
Sbjct: 791 IDRYFARYPGVLSYMERTRAQAAEQGYVETVFGRRLYLPEIHAQNQAMRKGAERAAINAP 850

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI+V   L+   +  +++LQ+HDELV EV E+ +      +   M  A
Sbjct: 851 MQGTAADIIKRAMIAVDDWLQGSGIDARIILQVHDELVLEVREDLLEEVGAQLKALMGGA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL V + V  NW E
Sbjct: 911 A----QLDVPLLVEVGVGANWDE 929


>gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1]
 gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1]
          Length = 915

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 347/984 (35%), Positives = 536/984 (54%), Gaps = 92/984 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SAAAKGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +   A R   K     + E+ +
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIR-GAKTLPAKLEEHRD 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ + ++ L+  + +   L +    +EF   +             
Sbjct: 240 AAFLSYELATIKVDVPLDVEVDALVCGEPDREALQALYTEMEFKSWV------------- 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E+ R+     ++ + + +  +K+                 
Sbjct: 287 -------------------AEVQREAARAGNEVAPVEEPAAKVEP--------------- 312

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I++    + W+ KL      +F   T  +DA  ++ + ++ +      
Sbjct: 313 --------TYETILDQARFEAWLDKLRQAPLFAFDTETTGLDAQKAQLVGLSFAVAPH-- 362

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  ++ L+ H  + +  +  L ++ +L  LK   E+    K+G N KYD  +L 
Sbjct: 363 ------EAAYVPLA-HDYEGAPAQ--LDRDAVLLALKPLLEDPAKAKVGQNAKYDINILA 413

Query: 478 RY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
                I MRG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I       +  +
Sbjct: 414 NGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFN 473

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I+  +   +A E++++ L+L   L+ +L     +  V   ++ P++ V++++E  G  +
Sbjct: 474 QINLDKAGPYAAEDADITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQGALV 533

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL   S E+   +  LE+  Y+L+GE+FNL SPKQLG IL+ KL  P  +KT  GQ 
Sbjct: 534 DAALLHVQSGELGVKMGELEQRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTAKGQP 593

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A   T
Sbjct: 594 STAEAVLDELALLGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAAT 653

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   L   
Sbjct: 654 GRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHA 713

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N LD+HR  AAE+FGV ++ V+   RR AK INF +IYG+S F LA Q+ + R ++ D
Sbjct: 714 FRNDLDVHRATAAEVFGVALQDVTTDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQSQD 773

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER AINA
Sbjct: 774 YIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINA 833

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI +RAM++V   L +  L  +++LQ+HDELV EV E+ +      I   M +
Sbjct: 834 PMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQ 893

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L VPL V   +  NW E
Sbjct: 894 AA----QLDVPLLVEAGIGANWDE 913


>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
 gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
          Length = 923

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 353/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +      
Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVEALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +     ++ E+    TI+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 292 --QQASQTVVQNEVKPAETIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A       Q+ D       
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                               ++IL+ +K   ENE   KIGH++KYD  +   +GI ++G 
Sbjct: 398 --------------------EQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S E
Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +K +  LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I 
Sbjct: 558 FAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 617 --EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR  
Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+PG
Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYPG 794

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V K L   K   K+LLQ+HDELVFE  +      S+ I   ME      + + VP
Sbjct: 855 LAMIAVDKILP--KDQAKLLLQVHDELVFEADQNIAEELSKQIASVMESV----VEISVP 908

Query: 962 LKVNIKVSNNWQE 974
           L V +    NW +
Sbjct: 909 LVVEVGQGQNWDD 921


>gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus parainfluenzae T3T1]
          Length = 932

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 373/986 (37%), Positives = 547/986 (55%), Gaps = 78/986 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + I+G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K    V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   A
Sbjct: 122 AVAASKANQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDRDAVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  + +L   E
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKVAELPIRGAKKLGDKLLAEKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++TDV + I  E L L   N  +L  +    EF + +N V    D    N
Sbjct: 242 MADLSYRLATIKTDVALDITPEQLTLGASNNDQLTEYFGRYEFKRWLNEVMNGADSITNN 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQK 357
                                               ++Q +KIN  Q TP        + 
Sbjct: 302 ------------------------------------NEQPTKINHYQATPALAQDNSDEA 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           L    I+   Y  ++   D+ +WV+KL+     +    TD +D   +  + I+ +  +  
Sbjct: 326 LPAIQIDRSRYETLLTEADLNRWVEKLKQAKLFALDTETDNLDYMAANLVGISFALENG- 384

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLV 475
                  E  ++ L +    D  G   TL K   L+ LK   EN    K+G N KYD  +
Sbjct: 385 -------EAAYLPLQL----DYLGAPKTLEKTTALTLLKPILENPTIQKVGQNFKYDLTI 433

Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
             R GI ++G   D ML SYVL+S GR  H++  +A+++L +   + +EI    K+ +  
Sbjct: 434 FARNGIDVQGVAFDTMLESYVLNSTGR--HNMDDLAKRYLGHQTISFEEIAGKGKNQLTF 491

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQ 589
           ++I   Q  E+A E+++V ++L  +L  KL  E  L  +++ ++ P++ V+S+ME  G+ 
Sbjct: 492 NQIQLEQAAEYAAEDADVTMKLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVL 551

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L   S EI+  L  LEE  Y L+G+ FNL+S KQL +ILF KL  P   KT  G 
Sbjct: 552 IDSDALFLQSNEIANRLSELEEQAYVLAGQPFNLASTKQLQEILFDKLGLPVIQKTPKGA 611

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T 
Sbjct: 612 PSTNEEVLEEL-AFSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTA 670

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH+++   L  
Sbjct: 671 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLIN 730

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAEIFGV +++V+ + RR+AK INF +IYG+S F L+ QL I R++A 
Sbjct: 731 AFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLSIGRADAQ 790

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+PG+  ++   +   +  GYVET+FGRR++  +INS     R   ER AIN
Sbjct: 791 SYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPDINSSNGMRRKAAERVAIN 850

Query: 890 APIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           AP+QG+AADI +RAMI + + L+ D  +A  M++Q+HDELVFEV  E++   S++I   M
Sbjct: 851 APMQGTAADIIKRAMIQLDQKLQNDPDIA--MIMQVHDELVFEVRSEKVEFYSKLIKTHM 908

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A     +L VPL V++    NW E
Sbjct: 909 ESAA----DLVVPLIVDVGQGTNWDE 930


>gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
 gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
 gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
          Length = 923

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 353/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +      
Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +     ++ E+    TI+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A       Q+ D       
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                               +++L+ +K   ENE   KIGH++KYD  +   +GI ++G 
Sbjct: 398 --------------------EQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S E
Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I 
Sbjct: 558 FAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 617 --EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR  
Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+PG
Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYPG 794

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V K L   K   K+LLQ+HDELVFEV        S+ I   M+      + + VP
Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISVP 908

Query: 962 LKVNIKVSNNWQE 974
           L V +    NW +
Sbjct: 909 LVVEVGQGKNWDD 921


>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
 gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
          Length = 922

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 350/980 (35%), Positives = 533/980 (54%), Gaps = 77/980 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS++YRAF+A P L+   +G P  A+ G  NML +LL    K+   S  AV+FD
Sbjct: 6   IVLVDGSSYLYRAFHALPPLT-TSEGQPTGAVKGVLNMLKRLL----KDYPDSPMAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++Y +YKA RP +P+ L  Q+  +    +A G+P + ++G EADD+I T   
Sbjct: 61  APGKTFRDDLYAEYKAQRPPMPDDLRVQVEPLHDCVRALGLPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G    I + DKD+ QLV+    L +T+K+E +D   V  K+G+PP  ++   AL 
Sbjct: 121 QAAEAGRDAVISTGDKDMAQLVNGHITLVNTMKDETLDTAGVEAKFGLPPSLIIDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQKKRR------ENILEYAET 239
           GD +DNIPG+PG+G KTA  LLQ   G LE +  +  ++K    R      + + E  E 
Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLQGMEGGLETVYADLEKVKTLSFRGAKTLPKKLEENREQ 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +L  ++TD  + + L+ L +   +   L++  + LEF   ++ +    D      
Sbjct: 241 AFLSYELATIKTDCELPVGLDDLNIARPDREALLALYRRLEFKNWLSELLEGGD------ 294

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                       +G+        D     +     SD     N       +         
Sbjct: 295 ------------EGV--------DDVAGGTATPEASDTADAGNGSGARHDVV-------- 326

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                      I     + +W+ +L    +  F + T ++    +  + + ++       
Sbjct: 327 -----------ITEQAVLDEWLARLADCEAFCFDLETTSLSYMEADIVGVGLAL------ 369

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                E  +I L+ H   D+  +    + +L  L   + +    KIG N+KYD  VL R+
Sbjct: 370 --EPGEAAYIPLA-HDYLDAP-EQLDRQAVLEALAPLWADAGKAKIGQNLKYDISVLARH 425

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535
           G  + G   D ML SYVLDS  + HD+ S+A K+L   + + ++I       +  ++I+ 
Sbjct: 426 GHEVAGPLHDTMLESYVLDSTATRHDMDSLALKYLGEKTVSFEDIAGKGAKQLTFNQIAL 485

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            Q   +A E+ ++ L+L   LRP++  + +L  V + L++P++ V+S+ME  G+ +D + 
Sbjct: 486 EQAAPYACEDVDITLRLHRELRPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALDPER 545

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L + S E+ + +  LE+  ++L+G +FNL SPKQLG+ILF + K P   KT  G   T  
Sbjct: 546 LHEQSRELGERIRELEQRAHELAGREFNLGSPKQLGEILFEEQKIPVIKKTPKGAPSTAE 605

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++   D P+ K I+E R  SK++STY D LP  ++  T R+HT Y  A T TGRL+
Sbjct: 606 AVLEELAL-DYPLPKVIMEHRGFSKLRSTYTDKLPKLVDPTTGRLHTSYHQAVTATGRLS 664

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T+ G++IR+AF++ P  +L++ADYSQIELRI+AH++    L   F   
Sbjct: 665 SSDPNLQNIPIRTEQGRRIRQAFVARPGYRLVAADYSQIELRIMAHLSGDKGLLDAFAQG 724

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AAE+FGV ++KVS + RR AK INF +IYG+S + L  QL I R++A  YI R
Sbjct: 725 RDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQIYIDR 784

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y+E+ +    ++GYVET+FGRR+H  EI+S   + R   ER AINAP+QG
Sbjct: 785 YFDRYPGVARYMERIRAQAAEDGYVETVFGRRLHLPEIHSQNRNRRQGAERTAINAPMQG 844

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI +RAMI V   L D  +   M++Q+HDELVFEV E E+      +   ME A   
Sbjct: 845 TAADIIKRAMIDVDGWLADGDIDAMMVMQVHDELVFEVAESEVDAFMDQVKTRMENAA-- 902

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L V L V  +   NW E
Sbjct: 903 --ELDVALTVEAESGANWDE 920


>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
 gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
 gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
 gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
          Length = 923

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 353/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +      
Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +     ++ E+    TI+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A       Q+ D       
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                               +++L+ +K   ENE   KIGH++KYD  +   +GI ++G 
Sbjct: 398 --------------------EQVLAQIKPVLENEAVKKIGHHLKYDAHISANHGIELKGW 437

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S E
Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I 
Sbjct: 558 FAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 617 --EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR  
Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+PG
Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYPG 794

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V K L   K   K+LLQ+HDELVFEV        S+ I   M+      + + VP
Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISVP 908

Query: 962 LKVNIKVSNNWQE 974
           L V +    NW +
Sbjct: 909 LVVEVGQGKNWDD 921


>gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY]
 gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
          Length = 922

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 349/984 (35%), Positives = 528/984 (53%), Gaps = 70/984 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDGSS++YRAF+A P L R   G P +A  G    +  +LQ  +KE  A +
Sbjct: 1   MTRPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASAPTGAIRGMINMLQALKKEVPADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+ +YP+YK +R  +P+ L  Q+  +    +  G P + I G EADD+
Sbjct: 60  AACVFDASGPTFRDALYPEYKQHRAPMPDDLRAQIEPIHEVVRLLGWPVLCIPGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +G  V I S DKDL QLV+    + DT+  +K D+  V  ++G+PP  MV
Sbjct: 120 IGTLAATAAGQGMQVVISSGDKDLSQLVNEHITIIDTMNGKKRDVAGVTAEFGVPPTLMV 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GD++DN+PG+P +G KTAA  L EYG+L+ +L NA  IK     EN+    +  
Sbjct: 180 DYQALVGDAVDNVPGVPKVGPKTAAKWLTEYGSLDALLANAGAIKGVAG-ENLRGALDWL 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             +R LV ++TD  +   L+ L       P + +     E   ++      Y        
Sbjct: 239 PTARTLVTIKTDCDLAGHLDGL-------PAIDAIAVGAEQADVLRDFYQKYGF------ 285

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    ++   A+ + +  D       F++       + ++Q               
Sbjct: 286 ---------KSLARALPSAVVPDAGASGDLFATPDASAVAVQAQQ--------------- 321

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  I+  + +  W+ +L+    A+    T ++D   ++ + +           
Sbjct: 322 ---REVTYDTILTWEQLDGWLARLKAAPLAALDTETTSLDELRAEIVGV----------- 367

Query: 421 SFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           SF VE     +I L+ H   D+  +  L  E+L  L+ + E+    K+G ++KYD+ V  
Sbjct: 368 SFSVEPGAAAYIPLA-HNGPDAPPQLPLA-EVLERLRPWLEDPACPKLGQHVKYDRHVFA 425

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            +GI +RG+  D ML SYVL+     H + S+A++    T    +++       IP  ++
Sbjct: 426 NHGIQVRGYAHDTMLQSYVLEV-HKPHGLTSLAERHTGRTGISYEDLCGKGAKQIPFAQV 484

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   ++ E+S+  L +  +L P+L  + KL  +YE L+    + + ++E  G+ ID 
Sbjct: 485 PVDKAAAYSCEDSDQTLDVHRVLWPQLQADDKLRGIYE-LEMACSETLFRIERNGVLIDA 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S  + + +L LE+  Y ++G+ FNL SPKQLG+I F KL  P   KT TG   T
Sbjct: 544 GKLAAQSHALGQRILQLEQEAYAIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARST 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE++   D P+   +LE R L K+K TY D L    + RT RVHT Y+ A  +TGR
Sbjct: 604 DEEVLEKL-AEDYPLPAKLLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVAVTGR 662

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T  G+++R AF++P  + + SADYSQIELRI+AHI+    L   F 
Sbjct: 663 LSSNEPNLQNIPIRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDEALLHAFR 722

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+S F LA  L I    AA YI
Sbjct: 723 EGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYI 782

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF R+PG+ +Y+E+TK   +  GYVET+FGRR++  EINSP    R   ERAAINAP+
Sbjct: 783 DRYFQRYPGVKQYMEETKAQAKARGYVETVFGRRLYLPEINSPNGPRRGAAERAAINAPM 842

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ ++AM++V   L+  K    M++Q+HDELVFE+PE E+    + I   M    
Sbjct: 843 QGTAADLIKKAMVAVQGELDARKPEVLMIMQVHDELVFELPEGEVDWLRREIPRLMAGVA 902

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L+VPL   + V  +W + +
Sbjct: 903 ----ALQVPLLAEVGVGPDWDKAH 922


>gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999]
          Length = 931

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 354/983 (36%), Positives = 546/983 (55%), Gaps = 71/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E    LVDGSS+++RAF+  P +S    G   +AI G  NML  LL+        +H AV
Sbjct: 6   EAPFVLVDGSSYLFRAFHGMPPMSNSQ-GQATHAIYGVINMLKSLLKTYEP----THIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++IYP+YKANRP +P+ L  Q+  +    +A G+P I     EADD+I T
Sbjct: 61  VFDAKGKTFRDDIYPEYKANRPPMPDELRSQIAPLHAIIKAMGLPLIVEPNVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            T  A   G    + + DKD+ QLV     L +T+    +D+  V++K+GI PE ++   
Sbjct: 121 LTKRATALGMKSLVSTGDKDMAQLVDDHVTLINTMNNTLMDVPGVVEKFGIGPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G K+A  LLQ  G + +I  N  +I        K   + + E+ 
Sbjct: 181 ALKGDKVDNIPGVPGVGDKSALGLLQGIGGINDIYNNLDKIATLDFRGAKTMAKKMQEHE 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           ++ARLS +L  +  D+P+    + L ++D +   L    +  EF +              
Sbjct: 241 QSARLSYELATIAIDLPLDYSPDQLSIKDADNNALAELFQTYEFKRWF------------ 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                               TE+  DT  K     + ++ +    SE TP         K
Sbjct: 289 --------------------TEVTGDTFAKAPHNKNNNNDSPV--SESTPANAVTSNTPK 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I++  Y  ++    + QW++K  +  +  F + T T  A + +   + IS     
Sbjct: 327 -----IDHTKYDVVLTEAALAQWIEKCSS--APLFGLQTFTSSAHYMEAQIVGISLCVAA 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            D  +      I L +H   D+  +   ++  L  L    +N    K+GHN+K+DK VL 
Sbjct: 380 GDACY------IPL-LHDYPDAP-EQLNSQWALEQLTPLLKNSKNQKVGHNLKFDKNVLA 431

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            +GI++ G   D ML SYVL+S  + H I +++  +L +   T + I       +  ++I
Sbjct: 432 NHGITLNGVAYDTMLESYVLNSVVTKHHIEALSLHYLGHSPITLESIAGKGAKQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             ++    A EN+++IL+L  LL P+L+   +L +V   L+ P+  V+S+ME TG+ ID 
Sbjct: 492 GLAEAAPFAAENADIILRLHQLLWPQLVNAPELANVVSELEVPLSQVLSRMEQTGVLIDS 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L Q S  +++ +L LEE +++++GE FNL S KQL  ILF K+  P   KT  G   T
Sbjct: 552 QKLAQQSQSLAERILHLEETVHEMAGEAFNLGSTKQLQHILFEKMNLPVIKKTPKGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   + P+ K I+E+R L+K+K+TY D LP  I+ RT RVHT Y  A T TGR
Sbjct: 612 GEEVLQELAL-NYPLPKAIMEYRGLTKLKNTYTDKLPKLIDHRTGRVHTSYQQAITATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+T+ G+K+R AFI+ P  K+++ADYSQIELRI+AH++  + L   F 
Sbjct: 671 LSSTDPNLQNIPIRTEEGRKVREAFIARPGYKIVAADYSQIELRIMAHLSSDSGLLHAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N LD+H+  A+E+FGV +E V+ + RR +K INF +IYG+S F LA QL IPR +A  Y+
Sbjct: 731 NGLDVHKATASEVFGVALEHVTSEQRRSSKAINFGLIYGMSAFGLAKQLNIPRGDAQHYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y++ T+   +  GYV+T+FGRR++  EI S   + R   ERAAINAP+
Sbjct: 791 DTYFERYPGVLQYMQDTREEAKAQGYVKTVFGRRLYLPEITSSNGARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI + +M++V   ++    +   M++Q+HDEL+FE+ E+++   S  I+  ME A
Sbjct: 851 QGTAADIIKLSMLAVDNWIQTQDQSDICMIMQVHDELIFEIKEQKVDAYSTKIIELMENA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               ++L VPL V   V  NW++
Sbjct: 911 ----VSLAVPLTVEFDVGENWEQ 929


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 356/971 (36%), Positives = 539/971 (55%), Gaps = 66/971 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVIFD P
Sbjct: 6   LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGAISAIQKLMRRTQP----THMAVIFDTP 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T T  A
Sbjct: 61  EPTFRHKLSPIYKGDRPSMPEELSEQIPYLHALIKALGIPLYSLPGAEADDIIGTLTKRA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
             EG  V I + DKD+ QLV+P   L D+ KE  +D   V++K+G+ P +++    L GD
Sbjct: 121 LSEGHHVLISTGDKDMAQLVNPHVKLEDSFKERVLDEAGVLEKFGVHPHQIIDYLTLMGD 180

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + D I G+PG+G KTAA LL EYG+L NI+ N  ++K  K  +NI +  +  ++  +L  
Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSLNNIIANVDQLK-GKLSQNIKDNLDNIKIDHQLAS 239

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
           +  D+ + +    L L   N  +L      LEF   +  +    + +    +     I  
Sbjct: 240 IVCDLDLALDWHDLKLSQPNTEQLRHLYTELEFRNQLQSLDHPNNPNTPVYQQTSQSIVK 299

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
            E K  +I  E   D    +SQ   L + T     EQ   +  L+R+Q+   + I+ +  
Sbjct: 300 AEQKTESIAIE---DHANLSSQDDQLGEATYHTVLEQADWEQLLQRMQQADHFAIDTE-- 354

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
                T ++   V +L       F I  D  +A++  P+A                    
Sbjct: 355 -----TTNLDYRVAEL-----VGFSIAFDANEAYYV-PLA-------------------- 383

Query: 429 IDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                    D  G    L++E +L+ +K   ENE   KIGH++KYD  +   +GI ++G 
Sbjct: 384 --------HDYEGAPEQLSREQVLAQIKPILENEQVKKIGHHLKYDAHIFANHGIIIQGW 435

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 436 YFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYA 495

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L+++   ++ P+  V++ ME  GI++D   L Q+S E
Sbjct: 496 AEDAHVTYRLYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLSVE 555

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            S  + +LE    +L+GE FN++SPKQ+G++LF KL    G KT TGQ+ T+   LE+I 
Sbjct: 556 FSDTMQTLENQATELAGETFNIASPKQVGEVLFDKLGIKGGKKTATGQYSTSESILEKI- 614

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+K+TY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 615 --EHPLAEVILEHRGLAKLKNTYTDRLVEQSHDATHRVHTSYHQALTATGRLSSTDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F+   D+HR  
Sbjct: 673 NIPIRTPIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQQGQDVHRRT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+  YI RYF R+PG
Sbjct: 733 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESRSYIARYFQRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + +Y+E+T+   R+ G+VETI GRR++  +I +    I+   ERAAINAP+QGSAADI +
Sbjct: 793 VLDYMERTRQIAREQGFVETILGRRLYTPDILATNKMIKQAAERAAINAPLQGSAADIIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V K L   K   K+LLQ+HDELVFE         S+ I   M+      + + VP
Sbjct: 853 LAMIAVDKILP--KDQAKLLLQVHDELVFEADVAIADELSKQIADVMQSV----LEISVP 906

Query: 962 LKVNIKVSNNW 972
             V +    NW
Sbjct: 907 FVVEVGQGLNW 917


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 344/961 (35%), Positives = 537/961 (55%), Gaps = 89/961 (9%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           R   G P  A+ G   ML +LL +     IA    VIFD    TFR+E++ DYKA RP +
Sbjct: 7   RNSAGEPTGAVRGVTAMLRRLLADYPDSPIA----VIFDAKGKTFRDELFEDYKAQRPPM 62

Query: 88  PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           P+ L  Q+  +    +A G+P + I G EADD+I T+   A ++G  V I + DKD+ QL
Sbjct: 63  PDDLRSQVQPIHDIIKAMGLPLLVIDGVEADDVIGTFARQATEKGLDVVISTGDKDMAQL 122

Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
           V+    L +T+ E  +D + V +K+G+PPE ++   AL GD +DNIPG+PG+G KTA  L
Sbjct: 123 VNQHVTLVNTMTETTLDPDGVKEKFGLPPELIIDFLALMGDKVDNIPGVPGVGEKTALAL 182

Query: 208 LQEYGNLENILINASRIKQ------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           +Q  G++++I  +   ++       KK  E + E  + A LS  L  ++ DV + I +E 
Sbjct: 183 IQSLGSIKDIYQDLEAVRSLDFRGAKKMPEKLAENKDMAELSYLLATIKCDVELDIDIEA 242

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
           +  ++ +   L++  K +EF   IN + +               +N+T            
Sbjct: 243 IKNQEQDTQSLLTLFKQMEFRSWINELES---------------VNST------------ 275

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
              T+ T+  + ++D T++   EQ                      Y  I+N +  Q W+
Sbjct: 276 ---TVVTAASTPVNDHTTR---EQ---------------------DYHTILNEQQWQDWL 308

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV---ETIFIDLSVHTSQD 438
           +KL      +F   T ++D   ++ + +           SF V   E  ++ L+ H    
Sbjct: 309 KKLNEAKLFAFDTETTSLDYLEARIVGV-----------SFAVKAGEAAYLPLN-HDYPG 356

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLD 497
           +  +      +++ LK   E+   LK+G N+KYD+ VL  + I+++G   D ML SYVLD
Sbjct: 357 APDQLDFDA-VMADLKPLLEDPTKLKVGQNLKYDRHVLLNHDINLQGIAHDTMLESYVLD 415

Query: 498 SGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           S  + HD+ S+A+K+L       ++I    K  +  ++I   +   +A E++++ LQL  
Sbjct: 416 STATRHDMDSLAKKYLDRDTIHFEDIAGKGKKQLTFNQIGLEEAAPYAAEDADITLQLHE 475

Query: 555 LLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
            L P++  +  L+ VY  L+ P++ V++ +E  G+ ID  +L+  S  ++  +  LE+  
Sbjct: 476 TLWPRIQAIPSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQIAELEKQA 535

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
           ++ +G+ FNL SPKQL +IL+ K + P   KT  GQ  T  + L+ +      + + I++
Sbjct: 536 HESAGQTFNLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEEVLQGLADDGYELPQIIMQ 595

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           +R LSK+KSTY D LP  +NK + RVHT Y  A T TGRL+S +PNLQNIPI+++ G++I
Sbjct: 596 YRGLSKLKSTYTDKLPLQVNKSSGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSENGRRI 655

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R AF++     L++ADYSQIELRI+AH++    L + F    DIHR  A+EIF + +E V
Sbjct: 656 REAFVASNGYTLLAADYSQIELRIMAHLSGDESLLKAFAAGEDIHRHTASEIFDIALEDV 715

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           S   RR AK INF +IYG+S   L+ QL I R +AADY++ YF R+PG+ +Y++ T+   
Sbjct: 716 SSDQRRSAKAINFGLIYGMSAHGLSKQLGIERHQAADYMQTYFDRYPGVRQYMDNTREQA 775

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           ++ GYVETIFGRR++  EINS     R   ER AINAP+QGSAADI +RAMI++H  L +
Sbjct: 776 KEQGYVETIFGRRLYLPEINSSNGMRRQYAERTAINAPMQGSAADIIKRAMIAIHSWLSE 835

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                +M++Q+HDELVFEVP E++  A   I    EK  +    L+VPL+V I V +NW+
Sbjct: 836 ADTGIRMIMQVHDELVFEVPLEQLDMAKDTI----EKFMMGAAELKVPLEVGIGVGDNWE 891

Query: 974 E 974
           +
Sbjct: 892 Q 892


>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 958

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 364/986 (36%), Positives = 545/986 (55%), Gaps = 82/986 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A   LS   DG P  A+ G  NML +L    R + +  + AV+FD
Sbjct: 35  LLLVDGSSYLYRAYHAMAQLSAP-DGAPTGALYGVLNMLRRL----RADYVHDYCAVVFD 89

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122
                FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   EADD+I 
Sbjct: 90  AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 145

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++   
Sbjct: 146 TLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 205

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+        L
Sbjct: 206 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLQAALPQLLL 264

Query: 243 SRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDCDA 296
           S  LV ++TDV +     H  L D         P+      A++F +   R   T+  +A
Sbjct: 265 SYDLVTIKTDVDL-----HTELSDGLESLRRTSPKWSQL--AVDFKRWGFR---TWLKEA 314

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL-ERL 355
            +      D +   +  I  +  +D +T+                 SE+ P+K    E+L
Sbjct: 315 ESRMHEAADGDLFGSDTIGEQAALDMETS-----------------SERLPEKAVAPEKL 357

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 358 -----------DYQAVTTEAQFAALLDKLSQADTIGIDTETTSLDAMNASLVGISIA--- 403

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 404 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 455

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 456 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 514

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 515 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 573

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 574 DRAELARQSAELGAELMKLEQQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 633

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 634 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 692

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 693 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 752

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 753 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 812

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 813 KTFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 872

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V + L D  L +K+++Q+HDELV EVPE E+    + +   M
Sbjct: 873 NAPMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQIM 932

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           EK     +N  VPL   + V  NW+E
Sbjct: 933 EKVDEGMLN--VPLVAEVGVGMNWEE 956


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 348/1006 (34%), Positives = 546/1006 (54%), Gaps = 104/1006 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  LFL+D  + I+R +YA    P ++    G+  +AI GF N L+ +++  + E    +
Sbjct: 8   DKRLFLLDAYALIFRGYYALIKNPRINSA--GMDTSAIMGFTNSLFDVIRREKPE----Y 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD      R E+Y DYKANR + PE +   +P ++   +A  IP +E  G EADD+
Sbjct: 62  LAVAFDKEGSKERVELYADYKANRDETPEAIKIAVPYIQQILKAMHIPIVEEAGIEADDL 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175
           I T    AEKEGF   +++ DKD  QLVS    +Y   +     + + I+ WGIP     
Sbjct: 122 IGTLAKQAEKEGFTTYMVTPDKDYAQLVSDNIFMYKPAR-----MGNGIEIWGIPEVQKK 176

Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
                PE+++    + GD+ DNIPG+PG+G KTA   +  YG++E +L N  ++K  K +
Sbjct: 177 FEVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIAAYGSMEGLLDNTDQLK-GKMK 235

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           E ++  AE   LS+KL  +R D P++    +  L+D +   +      LEF +    +A 
Sbjct: 236 EKVIANAELGLLSKKLATIRLDCPVSFNASNYTLDDPDVEAVHEIFDELEFRRAKETLAK 295

Query: 291 TYDCDAANIEPVV---------------LDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
            +  + A                       +  T   G A E+E     T+ TS      
Sbjct: 296 IFSKEVAPTSSSSSNSNTSSNSSAGAGQFSLFDTPGSGTAAESESTGRKTLATS------ 349

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395
           D   ++  E    KLFL+ L + S                             S  F   
Sbjct: 350 DHLYQLVQEGMGTKLFLQSLMQQS-----------------------------SVCFDTE 380

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
           T  +D   ++ + IA S    K               +   +D          I+  LK 
Sbjct: 381 TTGLDPLTAELVGIAFSWEKGKG------------FYLPIPEDREAAQV----IVDQLKP 424

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
           FFE+    K+G N+KYD  VL +YG+ ++G   D ML  Y+++     H++  +A+ +L+
Sbjct: 425 FFESASIEKVGQNLKYDIKVLDKYGVDVKGPMFDTMLAHYLINPDMR-HNMDVLAETYLN 483

Query: 515 YTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
           YT + I+    K  K+ + +  +   + +E+A+E++++ LQL     P+L       +++
Sbjct: 484 YTPQSIVELIGKKGKNQLSMRDVDLEKQKEYAVEDADITLQLKEHFTPELASAGTDKLFK 543

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P++DV++ MEI GI +D+D L  +S ++  ++  LE++IY+++GE+FN+ SPKQLG
Sbjct: 544 DIEMPLLDVLAAMEIEGINLDEDFLSSLSGDLETDITQLEKDIYEVAGEEFNIGSPKQLG 603

Query: 631 DILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
            ILF KLK      KTKTGQ+ +TA+D+      D+ II+N+L++R LSK+KSTY D+LP
Sbjct: 604 VILFEKLKLVDKPKKTKTGQY-STAEDVLSYLAKDHAIIQNVLDYRGLSKLKSTYVDALP 662

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISA 748
           N ++ +TQR+HT Y      TGRL+S +PNLQNIPI+T+ G+++R+AFI       LI+A
Sbjct: 663 NQVDAKTQRIHTNYMQTVAATGRLSSTDPNLQNIPIRTERGRQVRKAFIPRDENYTLIAA 722

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRI+A +++   +   F++  DIH   AA++F V +E V+ + R +AKT+NF I
Sbjct: 723 DYSQIELRIIAALSEEENMIAAFQSGEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGI 782

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+S F L+ Q  + R EA + I  Y+  +P +  Y++   +F R+NGYVET+ GRR +
Sbjct: 783 IYGVSAFGLSNQTDLSRGEAKELIDTYYATYPKLKAYMQDQVDFARENGYVETVLGRRRY 842

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS  + +R   ER A+NAPIQGSAADI + AMI++HK  E+    +KMLLQ+HDEL
Sbjct: 843 LKDINSSNAVVRGAAERNAVNAPIQGSAADIIKIAMINIHKKFEEMNCKSKMLLQVHDEL 902

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           VF++  +E+    ++I   M+ A      + VPL V +    NW E
Sbjct: 903 VFDIHNDELEDMKKLIQGEMQNAY----KMTVPLDVEVGTGQNWLE 944


>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
          Length = 923

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 352/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  ++P+ +    L L D N   L +    LEF   +  +    + ++++ +      
Sbjct: 238 ASIVCNLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +     ++ E+    TI+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A       Q+ D       
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                               +++L+ +K   ENE   KIGH++KYD  +   +GI ++G 
Sbjct: 398 --------------------EQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S E
Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I 
Sbjct: 558 FAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 617 --EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR  
Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+PG
Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYPG 794

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V K L   K   K+LLQ+HDELVFEV        S+ I   M+      + + VP
Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISVP 908

Query: 962 LKVNIKVSNNWQE 974
           L V +    NW +
Sbjct: 909 LVVEVGQGKNWDD 921


>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 923

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 354/974 (36%), Positives = 549/974 (56%), Gaps = 62/974 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +      
Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +     ++ E+    TI+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A                  
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYI-PLA------------------ 385

Query: 427 IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                  H  +++  +  L +E +L+ +K   ENE   KIGH++KYD  +   +GI ++G
Sbjct: 386 -------HNYENAPQQ--LNREQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKG 436

Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
            + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +
Sbjct: 437 WYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHY 496

Query: 542 AIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S 
Sbjct: 497 AAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSV 556

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I
Sbjct: 557 EFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI 616

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNL
Sbjct: 617 ---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNL 673

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR 
Sbjct: 674 QNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRR 733

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+P
Sbjct: 734 TAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYP 793

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI 
Sbjct: 794 GIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADII 853

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI V K L   K   K+LLQ+HDELVFEV        S+ I   M+      + + V
Sbjct: 854 KLAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISV 907

Query: 961 PLKVNIKVSNNWQE 974
           PL V +    NW +
Sbjct: 908 PLVVEVGQGKNWDD 921


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 364/983 (37%), Positives = 545/983 (55%), Gaps = 72/983 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + I+R +YA    P ++ K  G+  +AI GF N L +++   RKE      AV
Sbjct: 4   LFLLDAYALIFRGYYAFIKNPRINSK--GMNTSAIVGFMNSLLEVI---RKEQ-PHLLAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD      R+ ++P+YKANR + PE +   +P +     A  IP IE +G+EADDII T
Sbjct: 58  CFDKGGSQERSALFPEYKANREETPEAIRFAIPYIHQILHAMQIPVIEKEGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP-PEK 178
               AEK+G+ V +++ DKD  QLVSP   +Y   +  K      +E V + + +  PE+
Sbjct: 118 LAKQAEKQGYTVYMVTPDKDYGQLVSPNIFMYKPARGGKDTEIWGVEEVKENFQVENPEQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L  + GD++DNIPG+PG+G KTA  LL+E+G+LEN+L N  ++K  K RENI    +
Sbjct: 178 VIDLLGMMGDAVDNIPGLPGVGEKTAQKLLKEFGSLENLLDNTDKLK-GKLRENIEANKD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS+ L  +  DVP+T   +   L       +    + LEF  ++  +   +     N
Sbjct: 237 KGILSKTLARIILDVPVTFDEKDFELSSPKMAEIEPLFEELEFRTMLTTLQKAF-----N 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           + P              I T+ D           SL+ Q S I    TP    L   +KL
Sbjct: 292 VAP--------------ISTQPD---------LFSLAGQPSPIAGTATPSLFDLAPSKKL 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +    +++  + +L       F   T ++D   ++ + +A S    K 
Sbjct: 329 QTIKDVPHEYQLLTTQDEVKALLPELLKQKEVCFDTETTSLDEMEAQIVGLAFSWEVHKG 388

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 E                  +L KE LS LK FFE E+ LKIG N+KYD  +L  
Sbjct: 389 YYILFPEDF----------------SLAKEWLSLLKPFFEAENILKIGQNLKYDLKILAN 432

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPIDKI 533
           Y I +RG   D M+  Y+L+     H++  +A+ +LSY        I K  K  + +  +
Sbjct: 433 YDIEVRGQLFDTMIAHYLLNPDMR-HNMDLLAEAYLSYAPVAIETLIGKKGKGQLSMCSV 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                +E+A+E+++V LQL     P L  +K+  ++  ++ P++ V++QME  GI +D  
Sbjct: 492 PAELQKEYAVEDTDVTLQLKHTFLPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTA 551

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF-TKLKFPSGAKTKTGQWKT 652
            L Q+S EI+ +L++L+  I++ +GE FNLSSPKQLGDILF          KTKTGQ+ T
Sbjct: 552 FLSQLSKEINTDLIALQTAIFEQAGESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYAT 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++    +PI+ N+LE+R L K++STY D+LP  +N RT R+HT +  A T TGR
Sbjct: 612 SEEVLSEL-ASQHPIVANVLEFRALQKLQSTYTDALPREVNPRTGRIHTTFMQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S +PNLQNIPI+T  G +IR+AF+       L+SADYSQIELRI+A +++ T + + F
Sbjct: 671 LSSNQPNLQNIPIRTPRGSQIRKAFVPRDENYTLLSADYSQIELRIIAALSEETHMIEAF 730

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIHR  AA++FGV +E V+ + R HAKT+NF IIYG+S   L+ Q  + RS++ + 
Sbjct: 731 LDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSAIGLSQQTSLSRSQSKEL 790

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y+  +P +  YIE+   F R++GYV+T+ GRR +  +I+S    +R   ER A+NAP
Sbjct: 791 IDTYYQTYPKLKTYIEQQIFFAREHGYVQTLLGRRRYLPDIHSRNQVVRGAAERNAVNAP 850

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM+ + + LE  KLAT+MLLQ+HDEL+F+VP+ E+   + +I   M  A
Sbjct: 851 IQGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDELLFDVPKRELEVVTPLIREEMGHA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL V I   NNW E
Sbjct: 911 Y----ALSVPLIVEIGTGNNWLE 929


>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
 gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
          Length = 923

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 360/978 (36%), Positives = 549/978 (56%), Gaps = 70/978 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A KEG  V I + DKD+ QLV+    L D+ K+  +D E V +K+G+ P +++    L 
Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTESVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +      D  N      + 
Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSL------DHPN------NP 285

Query: 307 NTTENKGIA----IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           N +  K  A    ++ E+    TI+T   +SL+ Q  ++ +      L  E   +L Q  
Sbjct: 286 NNSSYKQQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRM 345

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            N D +   ++T+      +  E +G   F I  D  DA++  P+A              
Sbjct: 346 QNADHFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYI-PLA-------------- 385

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                      H  +++  +  L +E +L+ +K   ENE   KIGH++KYD  +   +GI
Sbjct: 386 -----------HNYENAPQQ--LNREQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGI 432

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537
            ++G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I    
Sbjct: 433 ELKGWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEV 492

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L 
Sbjct: 493 AAHYAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLD 552

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   
Sbjct: 553 KLSVEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESV 612

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE+I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S 
Sbjct: 613 LEKI---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSS 669

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D
Sbjct: 670 DPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQD 729

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +HR  AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF
Sbjct: 730 VHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYF 789

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSA
Sbjct: 790 QRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSA 849

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI V K L   K   K+LLQ+HDELVFEV        S+ I   M+      +
Sbjct: 850 ADIIKLAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----L 903

Query: 957 NLRVPLKVNIKVSNNWQE 974
            + VPL V +    NW +
Sbjct: 904 EISVPLVVEVGQGKNWDD 921


>gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1]
          Length = 959

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 366/989 (37%), Positives = 551/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 33  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 88  TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++    AL 
Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ +TI  + + L+          P L +  + LEF K + + A   +       
Sbjct: 267 ATIVTNLKLTISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 321

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+     D T+                S QTP             
Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 344

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 345 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L  + +LS  K   EN +  KIG ++KYD  +  
Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VPL V I +  NW++
Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957


>gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 928

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 354/986 (35%), Positives = 543/986 (55%), Gaps = 90/986 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   LVDGSS+++RAF+  P L+    G    A+ G  NML  L+    K+   +H AV+
Sbjct: 15  NPFILVDGSSYLFRAFHGMPPLTNSK-GQDTGAVYGVINMLRSLI----KQFNPTHMAVV 69

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+EIY +YKANRP +PE L  Q+  +    QA G+P I   G EADD+I T 
Sbjct: 70  FDAKGKTFRDEIYTEYKANRPSMPEELRSQIAPLHKIIQAMGLPIIVESGVEADDVIGTL 129

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K G    I + DKD+ QLV+    L +T+  + +D + V++K+GIPPE ++   A
Sbjct: 130 ADQASKLGIPTLISTGDKDMAQLVNEHVTLINTMNNQIMDPQGVVEKFGIPPELVIDFLA 189

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAE 238
           L GD +DNIPG+PG+G K+A  LLQ  G++  I  N  +I        KK  + + EY E
Sbjct: 190 LKGDKVDNIPGVPGVGDKSAVGLLQGIGSINEIYQNLDKIATLDFRGAKKMADKMREYEE 249

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            ARLS  L  ++ DV +                                     DC   +
Sbjct: 250 QARLSYTLATIKLDVEM-------------------------------------DCSPTS 272

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN-SEQTPQKLFLERLQK 357
           + P   + N +E + +  E E  R     T   S  +DQ S+ + S   P +        
Sbjct: 273 LSPT--EANYSELRDLFAELEFKRWLKEATDALSG-NDQLSQADQSNDEPAQ-------- 321

Query: 358 LSQYPINND---SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                 N D   +Y  I+    +  W++KL      +F   T +++   ++ + ++   +
Sbjct: 322 ------NTDIKANYHTILTQDALDDWLKKLHNAALFAFDTETTSLNYMQAELVGMSF-CI 374

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           ++ +     +   + D      +DS         +L+  K   E+++  K+G ++KYDK 
Sbjct: 375 EEGEAAYLPLAHDYADAPEQLDRDS---------VLALFKPLLEDKNKAKVGQHLKYDKN 425

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
           VL  Y I+++G   D ML SYVLDS  + HD+ S+AQ +L  +    ++I       +  
Sbjct: 426 VLANYDINLQGIAYDTMLESYVLDSVATRHDMDSLAQHYLGLSTVHFEDIAGKGAKQLTF 485

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I   Q   +A E++++ L+L   +  KL    +L  V   ++ P+  V+++ME  G+ 
Sbjct: 486 NQIPLEQAAHYAAEDADITLRLHNHIWKKLNQSPELASVLSEIEVPLATVLAKMEQFGVL 545

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID   L Q S +++  +L LE  ++ L+GE+FNL S KQL +ILF KL  P   KT  G 
Sbjct: 546 IDSQKLGQQSQDLASRILQLENEVHILAGEEFNLGSTKQLQEILFKKLDLPVLKKTPKGA 605

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T+ + L+++     P+ K ++E+R LSK+K+TY D LP  IN+R+ RVHT Y  A T 
Sbjct: 606 PSTSEEVLQELAL-TYPLPKLLMEFRVLSKLKNTYTDKLPKMINQRSGRVHTSYHQAITA 664

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S EPNLQNIPI+T+ G+++R+AFI  P  K+++ADYSQIELRI+AH+++   L +
Sbjct: 665 TGRLSSTEPNLQNIPIRTEQGRRVRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLLK 724

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   AAE+F V++E+V+ + RR+AK INF +IYG+S F L+ QL + R +A 
Sbjct: 725 AFSQGKDIHTATAAEVFNVSLEEVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSRQDAQ 784

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+PG+ +Y+E  +   ++ GYV T+FGRR++  +IN+     R   ERAAIN
Sbjct: 785 HYMDLYFERYPGVLKYMEDARVVAKEKGYVSTVFGRRLYLPDINASNGLRRKGAERAAIN 844

Query: 890 APIQGSAADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           AP+QG+AADI ++AM+ V   ++      T+M++Q+HDEL+FE+ E+ + +    IV  M
Sbjct: 845 APMQGTAADIIKKAMLKVDAWIDTLPNDQTRMIMQVHDELIFEIKEQNVESDKNTIVDLM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           EKA    ++L VPL V   V  NW E
Sbjct: 905 EKA----VSLDVPLIVEAGVGENWDE 926


>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
 gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter sp. ADP1]
          Length = 920

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 354/978 (36%), Positives = 545/978 (55%), Gaps = 77/978 (7%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVIFD P
Sbjct: 6   LVDGSYFLFRAFHALPPLTTS-TGLQTNAIRGAISAIQKLMRRTQP----THMAVIFDTP 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR+E+ P YK +RP +P+ L  Q+P +    +A GIP   + G EADD+I T    A
Sbjct: 61  EPTFRHELSPIYKGDRPSMPDELAQQIPYLHALIKALGIPLYMLPGAEADDVIGTLAKRA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           EKEG  V I + DKD+ QLV+    L D+ K++ +DI+ V  K+G+ P +++    L GD
Sbjct: 121 EKEGHQVLISTGDKDMAQLVTEKVTLEDSFKDKPMDIQGVFDKFGVWPNQIIDYLTLMGD 180

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + D I G+PGIG KTAA LL EYG++  IL N  +IK  K  +NI + A+   +  +L  
Sbjct: 181 ASDGIMGVPGIGAKTAAKLLTEYGSIGGILENVDQIK-GKVGQNIKDNADGIVIDHQLAS 239

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI-------NRVATTYDCDAANIEP 301
           +  D+ + +  + L L D +   L +    LEF   +       N V+ TY   A  ++ 
Sbjct: 240 IVCDLDLALTWDDLQLRDPHVETLRNLYTELEFRNQLQSLDHPHNPVSQTYKQTAQQMDK 299

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V +           IETE   D    TS+   L          Q      L+R Q   ++
Sbjct: 300 VEV--------APQIETE---DQASLTSEDDQLGTANYHTVLTQEAWDALLKRFQSEKRF 348

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+ ++ +               E +G   F +  D  DA++                  
Sbjct: 349 AIDTETTSLDYRVA---------EMVG---FSVAFDAQDAYY------------------ 378

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                    + +    D+  +    ++IL+ LK   E+E   KIGH++KYD  +   + +
Sbjct: 379 ---------VPLTHDYDNAPEQLNREQILAQLKPILEDETVHKIGHHLKYDAHIFANHSV 429

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537
            ++G + D ML SYV++S  + H +  +A+ +LS+   T ++I          ++I    
Sbjct: 430 ELKGWYFDTMLASYVINSVATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEV 489

Query: 538 VQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E+++V  +L+ +L  KL    +L ++   ++ P+  +++ ME  GI++D   L 
Sbjct: 490 AAHYAAEDAHVTYRLYEVLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLG 549

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q+S E ++ +L LE    +L+GE FN+SSPKQ+G+ILF K+    G KT TGQ  T+   
Sbjct: 550 QLSVEFTETILGLENQAIELAGESFNVSSPKQVGEILFDKMGLKGGKKTATGQHSTSESI 609

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   ++PI + ILE R LSK+K+TY D L    +  T RVHT Y  A T TGRL+S 
Sbjct: 610 LEKV---EHPIAEVILEHRTLSKLKNTYTDRLVEQSHNETHRVHTSYHQALTATGRLSSS 666

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+ ++G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D
Sbjct: 667 DPNLQNIPIRGEIGRQIRKAFIAPEGRILLAADYSQIELRLMAHFSQDEALLDAFQHGQD 726

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +HR  AAE+  + +E+V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF
Sbjct: 727 VHRRTAAEVLNIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYF 786

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
           HR+PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSA
Sbjct: 787 HRYPGIYEYMQRTRQVALEQGFVETILGRRLYTPDIDARNMMVRKGAERAAINAPLQGSA 846

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI V K L   K   K+LLQ+HDELVFEV  +     +  +  +M+      +
Sbjct: 847 ADIIKLAMIEVDKMLP--KDQAKLLLQVHDELVFEVDADLADELAPKLAETMQSV----V 900

Query: 957 NLRVPLKVNIKVSNNWQE 974
           N+ VPL V +    NW+E
Sbjct: 901 NISVPLLVEVGQGLNWEE 918


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 356/978 (36%), Positives = 545/978 (55%), Gaps = 64/978 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGSS+++RAF+A P L+    G    AI G  NM+ KLL+  + E IA    V+FD
Sbjct: 14  FILVDGSSYLFRAFHAMPPLTNTK-GHATGAIFGVINMIGKLLEQYQPERIA----VVFD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+E+Y DYKA+RP +P+ L  Q+  +    +A GIP + I G EADD++ T  +
Sbjct: 69  AKGKNFRHELYEDYKAHRPPMPDELRIQIEPIHEIIKALGIPLLVIDGVEADDVMGTLAH 128

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A +      + + DKD+ QLV+    L +T+ +  +  + V +K+ + PE+++   AL 
Sbjct: 129 QATQAKMDALLSTGDKDMAQLVNEHITLVNTMNDTLMTPDSVFEKFHVKPEQIIDYLALM 188

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP  G KTAA  + EYG+++N++ +A  IK  K  EN+    E  +LS++L
Sbjct: 189 GDSSDNIPGIPKCGPKTAAKWISEYGSIDNLIEHAEEIK-GKIGENLRANLEQLKLSQQL 247

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +R D  + I L  +   + +   L +     +    + RV                  
Sbjct: 248 TTIRLDCDLPIALNDIKRHEADMEALEALFSEYDLRNWLTRVL----------------- 290

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN---SEQTPQKLFLERLQKLSQYPI 363
                KG   E    + +  K    +  + Q+ K N   S +TP+               
Sbjct: 291 -----KG---ELPFSKSSGRKAHSETVTNGQSKKANTSPSTETPKA-------------- 328

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTS 421
           ++  Y  IV+     QW++KLE   S  F I T+T  ++A  +K + ++ +  ++KD  +
Sbjct: 329 DSQPYETIVDWHTFDQWLKKLE--ASDVFAIDTETTSLNAMEAKIVGVSFAYAEKKDQ-A 385

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           ++    ++ L+     D   +    +E+L+ LK   EN    K+G N KYD  +    GI
Sbjct: 386 WQNFAAYVPLT--HDYDGAPEQLPIQEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNAGI 443

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
            ++G   D ML SY  +S  + H++  +A  +L+++    K+I  + K     ++I    
Sbjct: 444 EVQGMAYDTMLESYCFNSVATRHNMDDLALTYLNHSTIHFKDIAGTGKKQKTFNQIELET 503

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E++++ LQL   L PKL  E  L+ V+E ++ P++ V+++ME  G+ ID+ +L 
Sbjct: 504 ASPYAAEDADITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLA 563

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E+ + L  LE+  + ++G  FNL+S KQL ++LF +L+ P   KT  GQ  T    
Sbjct: 564 DQSYELGQKLTELEQKAHLIAGTPFNLNSSKQLQEVLFERLELPIVKKTPKGQPSTAEPV 623

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L Q+    + +   ILE+R L+K+KSTY DSLP  IN++T RVHT Y  A   TGRL+S 
Sbjct: 624 LVQLAEDGHEMPNLILEYRSLAKLKSTYTDSLPKQINQQTGRVHTSYQQAVASTGRLSST 683

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI++  G++IR+AFI+ P  +L+++DYSQIELRI+AH++    L + F    D
Sbjct: 684 EPNLQNIPIRSAEGRRIRQAFIAQPGYRLMASDYSQIELRIMAHLSGDASLLKAFAEGKD 743

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH+  AAEIF + +E+V+ + RR AK +NF +IYG+S F LA QL I R  A +YI  YF
Sbjct: 744 IHQATAAEIFNMPLEEVTSEQRRSAKAVNFGLIYGMSAFGLAKQLNISRGLAQEYINLYF 803

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  Y+E TK   +Q GYVET+ GRR++  +IN+    +R   ER AINAP+QG+A
Sbjct: 804 ARYPGVANYMESTKENAKQTGYVETLMGRRLYLPDINAKNGQLRQYAERTAINAPMQGTA 863

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ + + L+      KML+Q+HDELVFEV E ++  A + I   ME A    +
Sbjct: 864 ADIIKTAMVKMQQWLDQTPCDIKMLMQVHDELVFEVAEADMDQARKEIKTIMEAA----L 919

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL V I    NW E
Sbjct: 920 KLDVPLIVEIGDGLNWDE 937


>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
 gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
          Length = 926

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 356/987 (36%), Positives = 535/987 (54%), Gaps = 72/987 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRAF+A P L R   G   +A  G    +  ++Q  RKE  A +
Sbjct: 1   MSDKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDRASAATGAIRGMINMMQALRKEVHADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+ IYP YK  R  +P+ L  Q+  +    +  G   +++ G EADD+
Sbjct: 60  AACVFDAKGPTFRDTIYPAYKQQRSPMPDDLRTQIAPIHEVVRLLGWKVLDVPGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A ++G  V + S DKDL QLV     + DT+  ++ D+  V  ++G+P   M+
Sbjct: 120 IGTLAVVAARQGIDVIVSSGDKDLAQLVDERITIIDTMNGKRRDLAGVEAEFGVPARLML 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             Q L GD +DN+PG+  +G KTAA  L EYG+L+ ++ +A +IK     EN+ +  +  
Sbjct: 180 DYQTLVGDQVDNVPGVEKVGPKTAAKWLLEYGSLDALVQSADKIKGVAG-ENLRKALDWL 238

Query: 241 RLSRKLVMLRTDVPI-----TIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              R+L+ ++TD  +      +P  H L L   +G RL +F +   F  L   +      
Sbjct: 239 PTGRQLLTIKTDCELDSWVDGLPALHALALGTPDGERLRAFYELYGFKGLARALG----- 293

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           DAA   PVV                      +        +D ++   +E    +  +  
Sbjct: 294 DAAP-APVV---------------------AMPGESGDLFADHSASPVAEAAQHRTVV-- 329

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y  I+N  D  +W ++L T    +    T ++D   ++ + I+ S  
Sbjct: 330 -------------YDTILNWADFDRWRERLLTAELVALDTETTSLDEMRAEIVGISFSVQ 376

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                     E  +I L+ HT  D+  +  L  E+L+ LK + E+  + K+G ++KYD+ 
Sbjct: 377 PG--------EAAYIPLA-HTGPDAPEQLPLG-EVLARLKPWLEDARYPKLGQHVKYDRH 426

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
           V   + I +RG+  D ML SYVL+     H +AS+A++    T    +++       IP 
Sbjct: 427 VFANHDIDVRGYVHDTMLQSYVLEV-HKPHGLASLAERHTGRTGISYEDLCGKGAHQIPF 485

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
            ++   +   ++ E+S+  L + L L P L  + KL  +YE L+    + + ++E  G+ 
Sbjct: 486 AQVPVDKAAAYSCEDSDQTLDVHLALWPLLQADDKLRFIYE-LEIASSEALYRIERNGVL 544

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID   L Q S E+ + +L LE   Y+++G+ FNLSSPKQLG+I F KL  P   KT TG 
Sbjct: 545 IDAPTLAQQSHELGQRILQLETEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGA 604

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + LE++   D P+   +LE R L+K+K TY D L      RT RVHT Y+ A  +
Sbjct: 605 RSTDEEVLEKL-AEDYPLPAKLLEHRSLTKLKGTYTDKLAQLALPRTGRVHTHYAQAVAV 663

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+T  G+++R AF++PP   + SADYSQIELRI+AHI+    L  
Sbjct: 664 TGRLSSNDPNLQNIPIRTAEGRRVREAFVAPPGCVIASADYSQIELRIMAHISGDHALLH 723

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F   LD+HR  AAE+FGV +++V+ + RR+AK INF +IYG+S F LA  L I    AA
Sbjct: 724 AFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAA 783

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI RYF R+PG+ +Y+++TK   +  GYVET+FGRR++  EINSP    R   ERAAIN
Sbjct: 784 AYIDRYFQRYPGVKQYMDETKAQAKARGYVETVFGRRLYLPEINSPNGPRRAGAERAAIN 843

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AAD+ + AM++V K L+ HK   KM++Q+HDELVFE+PE E+      I   M 
Sbjct: 844 APMQGTAADLIKLAMVAVQKELDAHKPGIKMIMQVHDELVFELPEGEVDWLRGHIPRLMA 903

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           +       L+VPL   + V  NW + +
Sbjct: 904 EVA----ALKVPLLAEVGVGANWDKAH 926


>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
 gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
          Length = 954

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 369/1003 (36%), Positives = 550/1003 (54%), Gaps = 88/1003 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K  G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNKQ-GEPTGAMYGVLNMLKSLIAQVEP----SHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLLSIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQASQAGKHVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G+++ I  N  ++ +   R        +    
Sbjct: 181 ALLGDSSDNIPGVKGVGEKTAIALLQGIGSMQAIYANLDKVAELSFRGAKTFAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           ETA LS  L  ++TDV + +  + LI +     +L+      EF + +N V      + A
Sbjct: 241 ETADLSYLLATIKTDVALDVTYDQLITQPQQRDQLVELFGRYEFKRWLNEV-----MNDA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV                     T     +  +    T  ++SEQ           K
Sbjct: 296 N--PV---------------------TQTSAEKIPNNYQATQAVSSEQKSAPFV-----K 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +S   I+  +Y  + + +   +W+ KL+     +    TD +DA  +  + I+    +  
Sbjct: 328 IS---IDRTAYDCVNSPELFTKWLAKLQMAELVAVDTETDNLDAMQANLVGISFGLENG- 383

Query: 418 DDTSFKVETIFIDLSVH------TSQDSTGK-------------NTLTK-EILSYLKKFF 457
                  E  +I L+        T  D  G+             N L K + L+ LK   
Sbjct: 384 -------EACYIPLAHKGKIAQPTQVDLFGESEAELDEVEALLPNQLNKADCLAQLKPIL 436

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY 515
           EN +  KIG NIKYD  +  RYGI ++G   D ML SY LDS GR  H++ ++A+++L +
Sbjct: 437 ENPNIRKIGQNIKYDLTIFARYGIELQGVAFDTMLQSYTLDSTGR--HNMDNLAERYLGH 494

Query: 516 TR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYER 571
                +E+    K  +  D+I   +  E+A E++ + ++L  LL  +L    +L+ ++E+
Sbjct: 495 QTIPFEELAGKGKHQLTFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQ 554

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P++ V+S++E  G+ ID   L   S EI + L  LE  ++  +GE FNL+S KQL +
Sbjct: 555 IEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEAGEVFNLASTKQLQE 614

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL  P   KT  G   T  + LE++    + +   ++E R LSK+KSTY D LP  
Sbjct: 615 ILFNKLGLPILKKTPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQM 674

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN +T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYS
Sbjct: 675 INAQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYS 734

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRI+AH+A    + + F    DIHR  AAEIFGV +E V+ + RR AK INF +IYG
Sbjct: 735 QIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYG 794

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +S F LA QL I R++A  Y++ YF R+P + +++   +    + GYVET+FGRR++  E
Sbjct: 795 MSEFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAAEKGYVETLFGRRLYLPE 854

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           INS     R   ER AINAP+QG+AADI + AMI + +++ + +    M++Q+HDELVFE
Sbjct: 855 INSSNQMRRKAAERVAINAPMQGTAADIIKVAMIGIDQAVRNCE-DIAMIMQVHDELVFE 913

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           V  + +   +Q+I   MEKA    I L+VPL   + V +NW E
Sbjct: 914 VKADRVEHYTQLIKAEMEKA----IELKVPLIAEVGVGSNWDE 952


>gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
 gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
          Length = 988

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 362/1002 (36%), Positives = 545/1002 (54%), Gaps = 90/1002 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS +++R ++A P   +   GL  NAI G  N L KL++        +H AV FD
Sbjct: 41  FILVDGSYYLFRTYHALPKTMQNSQGLVTNAIRGTLNALLKLMRRYHP----THMAVCFD 96

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR+ +  +YKANRPK+   L  Q+P +     A GIP + I+G EADDII T  Y
Sbjct: 97  TKSPTFRHAMSEEYKANRPKMDIELAEQIPYIHRLVTALGIPLLRIEGAEADDIIGTLAY 156

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  EG  V I + DKD+MQL++    L D+   +  D   V++K+GI PE+M+    L 
Sbjct: 157 RAVAEGHHVVISTGDKDMMQLINDCVILEDSFTGKMTDSAGVVEKFGINPEQMIDFLTLM 216

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS D I G+PGIG KTA  LL EYGN++N+L N + IK +  + N+LEYA+   ++ +L
Sbjct: 217 GDSSDGIKGVPGIGKKTAKDLLNEYGNIDNMLKNVANIKGRAGK-NLLEYADDIPMNAQL 275

Query: 247 VMLRTDVPI----------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             + TD+ +          T P  H+         L      LEF    N +A+      
Sbjct: 276 ATIVTDLEVGQDWQDLKINTDPCAHI-------NELRELYSELEFR---NELAS------ 319

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                  LD       G    T+     ++  SQ  + S         Q  + L    + 
Sbjct: 320 -------LDHPNHPANGNGHGTQ-----SVAHSQADAES-------QAQIAKSLQSSTIG 360

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            ++   I++ ++  I++       VQ L +  +  F I T+T   +  +   + +S   Q
Sbjct: 361 DITDSKIHDRAWHTILDESAFDNLVQLLAS--APHFVIDTETTSVYWRQAELVGLSFAVQ 418

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475
                   E  +I L+     D      L ++ +L+ LK   EN +  KIG ++KYD  +
Sbjct: 419 AH------EAYYIPLTHALEGDELIAKQLDRDTVLARLKPILENPNIGKIGQHLKYDAHI 472

Query: 476 LHRYGISMRG---------FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKS 523
           L  Y I++ G           D ML SYV+++  + H +  +A+ +L   + + +++   
Sbjct: 473 LSLYDINLLGNIHDKPNNWAMDTMLASYVINAAITRHGMDDLARHYLQTQTISFEDVAGK 532

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDV 579
               +  D+++     ++A E++++  QL+ L   KL  +    KLLH    L+ P  ++
Sbjct: 533 GAKQVSFDQVAIDIASDYACEDADITYQLFDLFSKKLADDTNNAKLLH---ELEIPTAEI 589

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           + QME  GI I +  L ++S    + +++LE+  Y+++GE+FNL SPKQLG++LF KL  
Sbjct: 590 LCQMEANGILIRRPFLNELSKRFDEEIIALEKRAYEVAGEEFNLGSPKQLGEMLFDKLGV 649

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
             G KTKTGQ+ T    L +I   D+P++   LE+R LSK+KSTY D+L N  + +T RV
Sbjct: 650 VGGKKTKTGQYSTGEAVLSKI---DHPLVDITLEYRGLSKLKSTYTDALDNVADAKTDRV 706

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y  A T TGRL+S +PNLQNIPI+T  G+ IR+AFI+P  + +++ADYSQIELR++A
Sbjct: 707 HTSYHQALTSTGRLSSTDPNLQNIPIRTATGRLIRQAFIAPEGRVILAADYSQIELRLMA 766

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H +    L   F   LDIH   AAE+ G  + +V+   RR+AK INF ++YG+S F LA 
Sbjct: 767 HFSGDKNLTHAFNEGLDIHAATAAEVLGKEVAEVTATERRNAKAINFGLLYGMSAFGLAK 826

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL++ RSEA DYI  YF R+PG+ +Y+  T+    ++GY+ETI GR+++  +IN     +
Sbjct: 827 QLQMSRSEAQDYIDMYFERYPGVKDYMINTRASAYEHGYIETILGRKLYTPDINHSNRMV 886

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           +   ERAAINAP+QGSAAD+ + AMI+V K L   K   KMLLQ+HDELVFEV  +++  
Sbjct: 887 KQGAERAAINAPLQGSAADLIKLAMIAVDKVLP--KEQAKMLLQVHDELVFEVDADKVDE 944

Query: 940 ASQIIVHSMEKACLP-------KINLRVPLKVNIKVSNNWQE 974
            SQ+I ++M+             +N  VPL V      NW E
Sbjct: 945 ISQLITNAMQDVLTATAVEKGWNVNFAVPLLVETDSGQNWDE 986


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 366/993 (36%), Positives = 539/993 (54%), Gaps = 102/993 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL  SR +   SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+   A G+P I I G EADD+I T
Sbjct: 62  FDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IHALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  + V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++        K     I E A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPEKVSDLGFRGAKTMAAKITENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK-----LINRVATTY 292
           +  RLS +L  ++TDV +      L  +  +   LI     +EF +     L N+  TT 
Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEVLDNKAPTTV 300

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             DAA +E                            +Q SS+ +                
Sbjct: 301 VADAAKVE----------------------------TQESSMPN---------------- 316

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                    P     Y  I+    + +W+ KL+     +    T ++D   ++ + +   
Sbjct: 317 ---------PALETQYDTILTETQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGM--- 364

Query: 413 TLDQKDDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGH 467
                   SF VE     ++ L+     D  G    L K+  L  L+   E++   K+G 
Sbjct: 365 --------SFAVEAGKAAYLPLA----HDYVGAPQQLDKQFALEKLRPILEDDKVKKVGQ 412

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           N+KYD  VL   GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I   
Sbjct: 413 NLKYDISVLANAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIGFEDIAGK 472

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQ 582
               +  ++I       +A E++++ L+L   L P+L  E +L  V+  ++ P+I V+S 
Sbjct: 473 GAKQLTFNQIPLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSD 532

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G+ ID  LL Q S E+++ + +LEE  Y+++GEKFNL SPKQL  + F KL +P  
Sbjct: 533 IERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPIT 592

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  G   T  + L ++   D P+ K ILE R LSK+KSTY D LP  +N +T RVHT 
Sbjct: 593 KKTPKGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A+  TGRL+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH++
Sbjct: 652 YHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L + F    DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL 
Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLD 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR+EA  YI  YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R  
Sbjct: 772 IPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTAS 941
            ERAAINAP+QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++  T  
Sbjct: 832 AERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLK 891

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q +   M KA +    L V L     + +NW E
Sbjct: 892 QKVCELMAKAAI----LDVALLAEAGIGDNWDE 920


>gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1]
          Length = 959

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 366/989 (37%), Positives = 551/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 33  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 88  TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++    AL 
Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ +TI  + + L+          P L +  + LEF K + + A   +       
Sbjct: 267 ATIVTNLKLTISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 321

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+     D T+                S QTP             
Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 344

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 345 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L  + +LS  K   EN +  KIG ++KYD  +  
Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIGVDRAVAQDYI 810

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VPL V I +  NW++
Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957


>gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Shigella flexneri 2930-71]
          Length = 884

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 343/927 (37%), Positives = 525/927 (56%), Gaps = 67/927 (7%)

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EAD
Sbjct: 12  THAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 71

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE 
Sbjct: 72  DVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPEL 131

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRREN 232
           ++   AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     
Sbjct: 132 IIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAK 191

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + +  E A LS +L  ++TDV + +  E L ++      L+   K  EF +       T 
Sbjct: 192 LEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TA 245

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D +              + KG           T    Q +S++D+  ++ +         
Sbjct: 246 DVEVGKW---------LQAKGA---------KTAAKPQETSVADEAPEVTATV------- 280

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                     I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +
Sbjct: 281 ----------ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA 330

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            ++        V   ++D     S +           L  LK   E+E  LK+G N+KYD
Sbjct: 331 -IEPGVAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYD 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           + +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +
Sbjct: 381 RGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQL 440

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITG 587
             ++I+  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G
Sbjct: 441 TFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNG 500

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           ++ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  
Sbjct: 501 VKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPG 560

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A 
Sbjct: 561 GAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV 619

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L
Sbjct: 620 TATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 679

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR E
Sbjct: 680 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 739

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAA
Sbjct: 740 AQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAA 799

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H 
Sbjct: 800 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQ 858

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           + + C     L VPL V +    NW +
Sbjct: 859 LMENC---TRLDVPLLVEVGSGENWDQ 882


>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
 gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
          Length = 935

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 363/989 (36%), Positives = 540/989 (54%), Gaps = 93/989 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 20  KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQP----SHIAV 74

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+  +A G+P I I G EADD+I 
Sbjct: 75  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IRALGLPLISISGVEADDVIG 133

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A  E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++ L
Sbjct: 134 TIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDL 193

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I+E 
Sbjct: 194 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIEN 253

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+  +LS +L  ++TDV +      L ++  +   LI     +EF + +  V        
Sbjct: 254 ADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEV-------- 305

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                  LD   T N  I   +E   D+T       +++ Q                   
Sbjct: 306 -------LDNKITANTSIDAASETQEDST----PVEAIATQ------------------- 335

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I+   ++  W+ KL+     +    T ++D   ++ + I       
Sbjct: 336 -----------YDCILTEAELDAWIAKLKKANLMAVDTETTSLDYMVAELVGI------- 377

Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNT-LTKEI-LSYLKKFFENEHFLKIGHNIKY 471
               SF VE     ++ L+     D  G  T + K + L  L+   E+    K+G N+KY
Sbjct: 378 ----SFAVEAGKAAYLPLT----HDYVGAPTQIDKTVALEKLRPLLEDPKLKKVGQNLKY 429

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
           D  +L   GI ++G   D ML SYV +S  S HD+  +A K+L +   + +EI       
Sbjct: 430 DISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQ 489

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           +  ++I       +A E++++ L+L   L P+L  E +L  ++  ++ P+I V+S +E  
Sbjct: 490 LTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQ 549

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID  LL Q S E+++ + +LEE  YD++GEKFNL SPKQL  + F KL +P   KT 
Sbjct: 550 GVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTP 609

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G   T  + L ++   D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A
Sbjct: 610 KGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQA 668

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           +  TGRL+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   
Sbjct: 669 NAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 728

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    DIHR  AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR 
Sbjct: 729 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 788

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI  YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERA
Sbjct: 789 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 848

Query: 887 AINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AINAP+QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++     + I 
Sbjct: 849 AINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTIC 908

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M +A     +L V L     + NNW E
Sbjct: 909 TLMAQAA----DLDVELLAEAGIGNNWDE 933


>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 930

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 370/987 (37%), Positives = 552/987 (55%), Gaps = 80/987 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRAF+A P L+   +  P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLVLVDGSSYLYRAFHAFPPLTNSLNE-PTGAMYGVLNMLKSLISQVQP----SHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ-LPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFR+EI+  YK++RP +PE L  Q LPL  +  +A GIP + ++G EADD+I 
Sbjct: 61  VFDAKGKTFRDEIFEQYKSHRPPMPEELRSQILPLHNI-IRALGIPLLVVEGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  V I + DKD+ QLV     L +T+    +D E V++K+G+PPE ++  
Sbjct: 120 TLAVQASRAGKKVLISTGDKDMAQLVDENIMLINTMTNTLLDREGVLEKYGLPPELIIDY 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEY 236
            AL GDS DNIPGIPG+G KTA  LLQ  G++  I  N  ++     R        + E 
Sbjct: 180 LALMGDSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEA 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A LS  L  ++TDV + +  E L     N   LI +    EF + +N V        
Sbjct: 240 KDLADLSYLLATIKTDVALDVSPEQLTFGVANKDALIEYFARYEFKRWLNEV-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERL 355
                    +N  E                  S  ++ S+Q  KIN  Q TP     ER 
Sbjct: 292 ---------MNGGE------------------SSVTNGSEQAVKINPYQATPSTN--ERE 322

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   I+   Y  ++   ++++W+ KL      +    TD++D   +  + ++ +  +
Sbjct: 323 NTVS-VQIDRSQYQCLLELSELKRWIDKLNQAKCIAIDTETDSLDYMVAHLVGVSFALEN 381

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                    E  ++ L      D  G  +    +  LS LK   EN    K+G NIKYD 
Sbjct: 382 G--------EAAYLPLR----HDYLGAPQQVDFQTALSLLKPVLENPEIHKVGQNIKYDL 429

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
            +  R+GI ++G   D ML+SYVLDS GR  H++  +A+++L +     ++I    K+ +
Sbjct: 430 SIFARHGIEVQGVSYDTMLLSYVLDSTGR--HNMDELAKRYLGHQTIHFEDIAGKGKAQL 487

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++I   Q  E+A E++++ ++L  +L  K+  + +L+ +Y+ ++ P+  V+S++E  G
Sbjct: 488 TFNQIPLEQAAEYAAEDADITMKLQQVLWEKVAAQPELVKLYQTMELPLASVLSRIERHG 547

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID D L   S +I   L +LE+  Y+L+G++FNL+S KQL +ILF KL  P   KT  
Sbjct: 548 VLIDSDALFSQSQQIGVRLTALEQQAYELAGQQFNLASTKQLQEILFDKLSLPVLKKTPK 607

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   ++ + K ++E R LSK+KSTY D LP  +NK T RVHT Y  A 
Sbjct: 608 GAPSTNEEVLEEL-AYEHALPKILVEHRGLSKLKSTYTDKLPLMVNKDTGRVHTSYHQAV 666

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIPI+ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L
Sbjct: 667 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAHLSQDKGL 726

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAEIFG+ + +VS + RR AK INF +IYG+S F L+ QL IPR E
Sbjct: 727 INAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIYGMSSFGLSRQLGIPRHE 786

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+PG+  ++   +   +  GYV T+F RR++  +I S  +  R   ER A
Sbjct: 787 AQKYMDLYFQRYPGVQAFMHDIRETAKAQGYVTTLFDRRLYLPDIQSSNAIRRKAAERVA 846

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAMI++ + +       KM++Q+HDELVFEV  ++I     II  +
Sbjct: 847 INAPMQGTAADIIKRAMITLDREIAGQP-DIKMIMQVHDELVFEVRTDKIEHFRTIIKTT 905

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME+A      L VPL V++ V  NW E
Sbjct: 906 MEQAA----QLVVPLIVDVGVGKNWDE 928


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 371/1002 (37%), Positives = 562/1002 (56%), Gaps = 92/1002 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLIAQVE----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T 
Sbjct: 62  FDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K+G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 AVQAAKDGKDVLISTGDKDMAQLVNEHIMLINTMTNTLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G+++ I  N  ++++   R        +    E
Sbjct: 182 LRGDSSDNIPGVKGVGEKTALALLQGIGSIQTIYQNLDKVEELSFRGAKTFAPKLEAEKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV +    + L     N   L++     EF K ++ V        AN
Sbjct: 242 MADLSYLLATIKTDVELEFRHDQLTTSPQNHDELVALFSQYEFKKWLSEVK-----GGAN 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             PV              +TE      +KT     +   T  + +E T  K+ ++R    
Sbjct: 297 --PVT-------------QTE-----KVKTPNAYEV---TQVVQNEPTFAKVDIDR---- 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS------ 412
                    Y  I  T  + +W++K++     +    TD++D+  +  + ++++      
Sbjct: 330 -------SKYETITETVALNRWLEKMQAEKCIALDTETDSLDSMSANLVGVSLALANGEA 382

Query: 413 -------------TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFE 458
                        + +Q D  + ++ET+  +L+         KN L   + L+ LK   E
Sbjct: 383 CYIPLVHKTLVTTSAEQGDLFANEMETVGYELA---------KNQLNLTVCLAQLKPILE 433

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYT 516
           N    KIG NIKYD  V   +GI+++G   D ML SY L+S GR  H++  +A+++L + 
Sbjct: 434 NPEIKKIGQNIKYDLTVFANHGINVQGVAFDTMLESYTLNSTGR--HNMDDLAERYLGHK 491

Query: 517 RKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERL 572
             E   I    K+ +  D+I  S   E+A E+++V ++L  +L  +L  E  L+ +++ +
Sbjct: 492 TIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLWSQLAQEPALVKLFDEI 551

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P++ V+S++E  G+ ID   LKQ S+EI + L  LE+ ++  +G  FNL+S KQL +I
Sbjct: 552 ELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVHSEAGSVFNLASTKQLQEI 611

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF KL  P   KT  G   T  + LE++    + + K ++E R LSK+KSTY D LP  I
Sbjct: 612 LFEKLGLPILKKTPKGAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMI 671

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N +T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQ
Sbjct: 672 NAKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQ 731

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH+A    + + F    DIHR  A+EIFGV +++V+ + RR+AK INF +IYG+
Sbjct: 732 IELRIMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGM 791

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL I R++A  Y++ YF+R+P + +++   K    + GYVET+ GRR++  EI
Sbjct: 792 SEFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEKGYVETLLGRRLYLPEI 851

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S  +  R   ER AINAP+QG+AADI + AMI + + ++ H    KM++Q+HDELVFEV
Sbjct: 852 KSSNAMRRKAAERVAINAPMQGTAADIIKIAMIGIDRVIQ-HSDEIKMIMQVHDELVFEV 910

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E+++   S +I   MEKA    I L VPL   + V +NW E
Sbjct: 911 KEDKVEHYSAVIKAEMEKA----IQLNVPLIAEVGVGDNWDE 948


>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
 gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 965

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 372/998 (37%), Positives = 546/998 (54%), Gaps = 76/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 15  QNPLVLVDGSSYLYRAFHAFPPLTNSL-GEPTGAMFGVLNMLKSLITQVQ----PSHIAV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + I+G EADD+I T
Sbjct: 70  VFDAKGKTFRDELFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLSIEGVEADDVIGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 130 LALQASSAGKKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 189

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPGI G+G KTA  LLQ  G++  I  N  ++        KK  E +    
Sbjct: 190 ALMGDSSDNIPGISGVGEKTALGLLQGIGSMAEIYANLDKVADLPIRGAKKLGEKLAAAK 249

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS  L  ++TDV + +  E LI+   N   LI +    EF + +N        +A 
Sbjct: 250 ADADLSYVLATIKTDVELDLNPEQLIIGTANKDELIEYFARYEFKRWLN--------EAL 301

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N E                            S  +   +Q  KIN+ Q    L  +    
Sbjct: 302 NDE----------------------------SSVTKPQEQAVKINNYQATPALAKQESAV 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413
            +   I+   Y  + N   +QQW++K+  +   +    T+ +D   ++ + I+ +     
Sbjct: 334 KNSVKIDRTLYETVDNQAKLQQWIEKIRQVKLVAVDTETNALDPMLAELVGISFALENGE 393

Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGK-----NTLTK-EILSYLKKFFENEHF 462
                L      + + E    DL   + Q S  +       L K E LS LK   EN   
Sbjct: 394 ACYIPLAHVHQVAAQAENAQGDLFAESEQSSESRWEPVVGQLNKAECLSQLKPLLENPEI 453

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TR 517
            KIG NIKYD  +    GI+M+G   D ML SYVL+S GR  H++  +A+++L +     
Sbjct: 454 KKIGQNIKYDLTIFANNGINMQGVTFDTMLESYVLNSTGR--HNMDDLAERYLGHHTIAF 511

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL-WLLLRPKLIVEKLLHVYERLDKPM 576
           ++I    K+ +  D+I   +  E+A E+++V ++L   L R      +L+ +Y+ ++ P+
Sbjct: 512 EDIAGKGKNQLTFDQIELKKAAEYAAEDADVTMKLHQTLWREVAQSPELVKLYQEMELPL 571

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+S++E  G+ ID   L   S E S+ L +LE   ++L+G+ FNL+S KQL +ILF K
Sbjct: 572 VSVLSRIERNGVLIDSRALLAQSKEFSQKLTALENKAHELAGQHFNLASTKQLQEILFDK 631

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L  P   KT  G   T  + LE++   ++ + K ++E R LSK+KSTY D LP  +N++T
Sbjct: 632 LGLPVLKKTPKGAPSTNEEVLEEL-AYEHELPKLLVEHRGLSKLKSTYTDKLPQMVNRKT 690

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+    K+I+ADYSQIELR
Sbjct: 691 GRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIARKGFKVIAADYSQIELR 750

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH++    L   F    DIHR  AAEIFG+ +E V+ + RR AK INF +IYG+S F 
Sbjct: 751 IMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVTAEQRRSAKAINFGLIYGMSSFG 810

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ QL I R +A  Y+  YF R+PG+  ++   +   +  GYVET+FGRR++  +I S  
Sbjct: 811 LSRQLGIARGDAQRYMDLYFQRYPGVQTFMTNIREKAKSQGYVETLFGRRLYLPDIQSAN 870

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           +  R   ER AINAP+QG+AADI +RAMI + K++ D      M++Q+HDELVFEV E++
Sbjct: 871 AMRRKAAERVAINAPMQGTAADIIKRAMIDIDKAITDDP-DILMIMQVHDELVFEVKEDK 929

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   S +I   ME A      L VPL V++ V +NW E
Sbjct: 930 IEHYSALIKSLMENAA----QLHVPLIVDVGVGDNWDE 963


>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
 gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
 gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
          Length = 921

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 363/989 (36%), Positives = 540/989 (54%), Gaps = 93/989 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQP----SHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+  +A G+P I I G EADD+I 
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IRALGLPLISISGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A  E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++ L
Sbjct: 120 TIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I+E 
Sbjct: 180 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIEN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+  +LS +L  ++TDV +      L ++  +   LI     +EF + +  V        
Sbjct: 240 ADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEV-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                  LD   T N  I   +E   D+T       +++ Q                   
Sbjct: 292 -------LDNKITANTSIDAASETQEDST----PVEAIATQ------------------- 321

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I+   ++  W+ KL+     +    T ++D   ++ + I       
Sbjct: 322 -----------YDCILTEAELDAWIAKLKEADLMAVDTETTSLDYMVAELVGI------- 363

Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNT-LTKEI-LSYLKKFFENEHFLKIGHNIKY 471
               SF VE     ++ L+     D  G  T + K + L  L+   E+    K+G N+KY
Sbjct: 364 ----SFAVEAGKAAYLPLT----HDYVGAPTQIDKTVALEKLRPLLEDPKLKKVGQNLKY 415

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
           D  +L   GI ++G   D ML SYV +S  S HD+  +A K+L +   + +EI       
Sbjct: 416 DISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQ 475

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           +  ++I       +A E++++ L+L   L P+L  E +L  ++  ++ P+I V+S +E  
Sbjct: 476 LTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQ 535

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID  LL Q S E+++ + +LEE  YD++GEKFNL SPKQL  + F KL +P   KT 
Sbjct: 536 GVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTP 595

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G   T  + L ++   D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A
Sbjct: 596 KGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTNYHQA 654

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           +  TGRL+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   
Sbjct: 655 NAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    DIHR  AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR 
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI  YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERA
Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834

Query: 887 AINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AINAP+QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++     + I 
Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTIC 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M +A     +L V L     + NNW E
Sbjct: 895 TLMAQAA----DLDVELLAEAGIGNNWDE 919


>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
          Length = 932

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 373/986 (37%), Positives = 547/986 (55%), Gaps = 78/986 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + I+G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K    V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 AVEASKANQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREAVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  + +L   E
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKVAELPIRGAKKLGDKLLAEKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++TDV + I  E L L   N  +L  +    EF + +N V    D    N
Sbjct: 242 MADLSYRLATIKTDVALDITPEQLTLGASNNDQLTEYFGRYEFKRWLNEVMNGADSITNN 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQK 357
                                               ++Q +KIN  Q TP        + 
Sbjct: 302 ------------------------------------NEQPTKINHYQATPALAQNNDDEA 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           L    I+   Y  ++   D+ +WV+KL+     +    T+ +D   +  + I+ +  +  
Sbjct: 326 LPAIQIDRSRYETLLTEADLNRWVEKLKQAKLFALDTETNNLDYMAANLVGISFALENG- 384

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLV 475
                  E  ++ L +    D  G   TL K   L+ LK   EN    K+G N KYD  +
Sbjct: 385 -------EAAYLPLQL----DYLGAPKTLEKTTALALLKPVLENPAIQKVGQNFKYDLTI 433

Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
             R GI ++G   D ML SYVL+S GR  H++  +A+++L +   T +EI    K+ +  
Sbjct: 434 FARNGIDVQGVAFDTMLESYVLNSTGR--HNMDDLAKRYLGHQTITFEEIAGKGKNQLTF 491

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQ 589
           ++I   +  E+A E+++V ++L  +L  KL  E  L  +++ ++ P++ V+S+ME  G+ 
Sbjct: 492 NQIPLEKAAEYAAEDADVTMKLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVL 551

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L   S EI+  L  LEE  Y L+G+ FNL+S KQL +ILF KL  P   KT  G 
Sbjct: 552 IDSDALFLQSNEIANRLSELEEQAYVLAGQPFNLASTKQLQEILFDKLGLPVIQKTPKGA 611

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T 
Sbjct: 612 PSTNEEVLEEL-AFSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTA 670

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH+++   L  
Sbjct: 671 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLIN 730

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAEIFGV +++V+ + RR+AK INF +IYG+S F L+ QL I R++A 
Sbjct: 731 AFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGIGRADAQ 790

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+PG+  ++   +   +  GYVET+FGRR++  +INS     R   ER AIN
Sbjct: 791 SYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPDINSSNGMRRKAAERVAIN 850

Query: 890 APIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           AP+QG+AADI +RAMI + + L+ D  +A  M++Q+HDELVFEV  E++   S++I   M
Sbjct: 851 APMQGTAADIIKRAMIQLDQKLQNDPDIA--MIMQVHDELVFEVRSEKVEFYSKLIKTHM 908

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A     +L VPL V++    NW E
Sbjct: 909 ESAA----DLVVPLIVDVGQGTNWDE 930


>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
 gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
          Length = 892

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 344/976 (35%), Positives = 545/976 (55%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGSS+IYRA++A   LS   +G P NA+ GF  ML K++    K+   +H AVIFD
Sbjct: 8   LYLLDGSSYIYRAYFAIRHLSSP-NGFPTNALYGFTQMLLKVM----KDRAPAHVAVIFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              +TFRNE++P YKA R  +PE L  Q+  ++   +AF IPA+E+ GFEADDII T   
Sbjct: 63  AGKITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFNIPALELPGFEADDIIGTIAR 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             E +G A  +++ DKDLMQ+VS    L DT+KE+   I  V +K+G+ PE++V + AL 
Sbjct: 123 KCEAQGMACVVVTGDKDLMQIVSDRVTLLDTMKEKSFGIAEVYEKFGVAPERVVDVLALW 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+PGIG  TA  LLQE+G+L+ +L  A  +K K   E ++E+A+ ARL R L
Sbjct: 183 GDASDNIPGVPGIGEVTAKKLLQEFGSLDELLARAGEVKGKNG-ERLVEFADQARLCRTL 241

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +                DCN P                     Y  D   + P     
Sbjct: 242 ATI----------------DCNVP-------------------IEYSIDDFAVTP----- 261

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP-INN 365
              +N+ +A           +   F++L                    L+ L+  P ++ 
Sbjct: 262 --PDNRRLA--------ALFREYGFATL--------------------LKDLTSSPTLSC 291

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           D Y+ ++  +++++   +LE   + +  + T +++   ++ +  A S            E
Sbjct: 292 DRYSLVLTEEELRRVAAELEAAPAFAIDLETTSLNPREARVVGYAASCRPH--------E 343

Query: 426 TIFIDLS-VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             +I +   +         +L  EIL  L K   +    KIG N+KYD  VL   G  + 
Sbjct: 344 AWYIPVGHRYLGAPEQLPESLVLEILGPLLK---DPARRKIGQNLKYDYQVLRIAGFELE 400

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML +Y+++  R+S  + ++A ++L +   +  E+ +S K  +   ++   +   
Sbjct: 401 GIWCDTMLAAYLVNPARNSQGLDALALEYLDHRMISYAEVARSGKCELNFSEVDLDRAGP 460

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           ++ E+++    L  +L PK+  + +  +   L+ P++ +++ ME+ G+++D DL+K++S 
Sbjct: 461 YSCEDADATYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELST 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQWKTTAQDLE 658
              K L+ LE  I++  G  FN++SPKQLG++LF ++    G KTK  TG W T  ++LE
Sbjct: 521 GFGKQLIELEAQIHEHCGGPFNINSPKQLGEMLFERMGLAVGKKTKGKTG-WSTNVEELE 579

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   ++ + + +L++R +SK+KSTY D+LP  +   T RVHT Y+ A T TGRL+S +P
Sbjct: 580 RL-AEEHEVARLLLQYRSISKLKSTYTDALPKLVAPATGRVHTSYNQAVTSTGRLSSSDP 638

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+ + G+ IRRAFI+ P   ++SADYSQIELR+LAH++    L + F    DIH
Sbjct: 639 NLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEAFAAGEDIH 698

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  A+E+FG+  E V+ +MRR AK INF +IYG   F LA +L +   +A  +I  YF R
Sbjct: 699 RRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKAFIDSYFER 758

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
             G   +++         G+V TI GRR+   EI S   ++R   +R A+N PIQGSAAD
Sbjct: 759 HSGARSFLDSCIREAEVCGFVTTIMGRRLCIPEIASKNGNVRAFAQRNAVNYPIQGSAAD 818

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ V++ +++ ++A+++++Q+HDEL+FEVPE E     +++   ME A LP   L
Sbjct: 819 IIKAAMLRVNRRMQEERVASRLIMQVHDELIFEVPEGERDLMEELVRTEME-AALP---L 874

Query: 959 RVPLKVNIKVSNNWQE 974
            VPLKV++    NW E
Sbjct: 875 SVPLKVDLNFGLNWSE 890


>gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 366/993 (36%), Positives = 539/993 (54%), Gaps = 102/993 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL  SR +   SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+   A G+P I I G EADD+I T
Sbjct: 62  FDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IHALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  + V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L     +        K     I+E A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPENVSDLGFRGAKTMAAKIIENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK-----LINRVATTY 292
           +  RLS +L  ++TDV +      L  +  +   LI     +EF +     L N+  TT 
Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEVLDNKAPTTV 300

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             DAA +E                            +Q SS+ +                
Sbjct: 301 VADAAKVE----------------------------TQESSMPN---------------- 316

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                    P     Y  I+    + +W+ KL+     +    T ++D   ++ + +   
Sbjct: 317 ---------PALETQYDTILTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGM--- 364

Query: 413 TLDQKDDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGH 467
                   SF VE     ++ L+     D  G    L K+  L  L+   E++   K+G 
Sbjct: 365 --------SFAVEAGKAAYLPLA----HDYVGAPQQLDKQFALEKLRPILEDDKVKKVGQ 412

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           N+KYD  VL   GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I   
Sbjct: 413 NLKYDISVLANAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIGFEDIAGK 472

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQ 582
               +  ++I       +A E++++ L+L   L P+L  E +L  V+  ++ P+I V+S 
Sbjct: 473 GAKQLTFNQIPLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSD 532

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G+ ID  LL Q S E+++ + +LEE  Y+++GEKFNL SPKQL  + F KL +P  
Sbjct: 533 IERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPIT 592

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  G   T  + L ++   D P+ K ILE R LSK+KSTY D LP  +N +T RVHT 
Sbjct: 593 KKTPKGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A+  TGRL+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH++
Sbjct: 652 YHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L + F    DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL 
Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLD 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR+EA  YI  YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R  
Sbjct: 772 IPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTAS 941
            ERAAINAP+QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++  T  
Sbjct: 832 AERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLK 891

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q +   M KA +    L V L     + +NW E
Sbjct: 892 QKVCELMAKAAI----LDVALLAEAGIGDNWDE 920


>gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4]
 gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4]
          Length = 959

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 365/989 (36%), Positives = 549/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 33  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 88  TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++    AL 
Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ + I  + + L+          P L +  + LEF K + + A   +       
Sbjct: 267 ATIVTNLKLAISFDDITLDHSQETTIERAPALYALFEELEFKKEMAQTAELLNLP----- 321

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+     D T+                S QTP             
Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 344

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 345 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L    +LS  K   EN +  KIG ++KYD  +  
Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VPL V I +  NW++
Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957


>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
 gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
          Length = 921

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 363/989 (36%), Positives = 540/989 (54%), Gaps = 93/989 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQP----SHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+  +A G+P I I G EADD+I 
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IRALGLPLISISGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A  E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++ L
Sbjct: 120 TIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I+E 
Sbjct: 180 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIEN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+  +LS +L  ++TDV +      L ++  +   LI     +EF + +  V        
Sbjct: 240 ADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEV-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                  LD   T N  I   +E   D+T       +++ Q                   
Sbjct: 292 -------LDNKITANTPIDAASETQEDST----PVEAIATQ------------------- 321

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I+   ++  W+ KL+     +    T ++D   ++ + I       
Sbjct: 322 -----------YDCILTEAELDAWIAKLKEADLMAVDTETTSLDYMVAELVGI------- 363

Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNT-LTKEI-LSYLKKFFENEHFLKIGHNIKY 471
               SF VE     ++ L+     D  G  T + K + L  L+   E+    K+G N+KY
Sbjct: 364 ----SFAVEAGKAAYLPLT----HDYVGAPTQINKTVALEKLRPLLEDPKLKKVGQNLKY 415

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
           D  +L   GI ++G   D ML SYV +S  S HD+  +A K+L +   + +EI       
Sbjct: 416 DISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQ 475

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           +  ++I       +A E++++ L+L   L P+L  E +L  ++  ++ P+I V+S +E  
Sbjct: 476 LTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQ 535

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID  LL Q S E+++ + +LEE  YD++GEKFNL SPKQL  + F KL +P   KT 
Sbjct: 536 GVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTP 595

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G   T  + L ++   D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A
Sbjct: 596 KGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQA 654

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           +  TGRL+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   
Sbjct: 655 NAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    DIHR  AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR 
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI  YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERA
Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834

Query: 887 AINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AINAP+QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++     + I 
Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTIC 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M +A     +L V L     + NNW E
Sbjct: 895 TLMAQAA----DLDVELLAEAGIGNNWDE 919


>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
 gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
          Length = 921

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 363/989 (36%), Positives = 540/989 (54%), Gaps = 93/989 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQP----SHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+  +A G+P I I G EADD+I 
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IRALGLPLISISGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A  E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++ L
Sbjct: 120 TIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I+E 
Sbjct: 180 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIEN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+  +LS +L  ++TDV +      L ++  +   LI     +EF + +  V        
Sbjct: 240 ADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEV-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                  LD   T N  I   +E   D+T       +++ Q                   
Sbjct: 292 -------LDNKITANTPIDAASETQEDST----PVEAIATQ------------------- 321

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I+   ++  W+ KL+     +    T ++D   ++ + I       
Sbjct: 322 -----------YDCILTEAELDAWIAKLKQADLMAVDTETTSLDYMVAELVGI------- 363

Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNT-LTKEI-LSYLKKFFENEHFLKIGHNIKY 471
               SF VE     ++ L+     D  G  T + K + L  L+   E+    K+G N+KY
Sbjct: 364 ----SFAVEAGKAAYLPLT----HDYVGAPTQIDKTVALEKLRPLLEDPKLKKVGQNLKY 415

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
           D  +L   GI ++G   D ML SYV +S  S HD+  +A K+L +   + +EI       
Sbjct: 416 DISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQ 475

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           +  ++I       +A E++++ L+L   L P+L  E +L  ++  ++ P+I V+S +E  
Sbjct: 476 LTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQ 535

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID  LL Q S E+++ + +LEE  YD++GEKFNL SPKQL  + F KL +P   KT 
Sbjct: 536 GVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTP 595

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G   T  + L ++   D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A
Sbjct: 596 KGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQA 654

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           +  TGRL+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   
Sbjct: 655 NAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    DIHR  AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR 
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI  YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERA
Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834

Query: 887 AINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AINAP+QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++     + I 
Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTIC 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M +A     +L V L     + NNW E
Sbjct: 895 TLMAQAA----DLDVELLAEAGIGNNWDE 919


>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
 gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
          Length = 928

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 363/986 (36%), Positives = 544/986 (55%), Gaps = 82/986 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  + AV+FD
Sbjct: 5   LLLVDGSSYLYRAYHAMAQLTAP-DGAPTGALYGVLNMLRRL----RADYVHDYCAVVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122
                FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   EADD+I 
Sbjct: 60  AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 115

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++   
Sbjct: 116 TLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 175

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+        L
Sbjct: 176 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLQAALPQLPL 234

Query: 243 SRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDCDA 296
           S  LV ++TDV +     H  L D         P+      A++F +   R   T+  +A
Sbjct: 235 SYDLVTIKTDVDL-----HSELSDGLESLRRTSPKWSQL--AVDFKRWGFR---TWLKEA 284

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL-ERL 355
            +      D +   +  I  +  +D +T+                 SE+ P+K    E+L
Sbjct: 285 ESRIHEAADGDLFGSDTIGEQAALDMETS-----------------SERLPEKAVAPEKL 327

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +         + KL   G       T ++DA ++  + I+I+   
Sbjct: 328 -----------DYQAVTTEAQFAALLDKLSQAGKIGIDTETTSLDAMNAALVGISIA--- 373

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 374 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 425

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 426 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 484

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 485 ADVAIEQATEYAAQDADFALRLDAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 543

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 544 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 603

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 604 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 662

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 663 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 722

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 723 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 782

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 783 KTFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 842

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V + L D  L +K+++Q+HDELV EVPE E+    + +   M
Sbjct: 843 NAPMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQIM 902

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K     +N  VPL   + V  NW+E
Sbjct: 903 AKVDEGMLN--VPLVAEVGVGMNWEE 926


>gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 959

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 365/989 (36%), Positives = 549/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 33  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 88  TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++    AL 
Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ + I  + + L+          P L +  + LEF K + + A   +       
Sbjct: 267 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 321

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+     D T+                S QTP             
Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 344

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 345 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L    +LS  K   EN +  KIG ++KYD  +  
Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VPL V I +  NW++
Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 365/993 (36%), Positives = 540/993 (54%), Gaps = 102/993 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL  SR +   SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+   A G+P I I G EADD+I T
Sbjct: 62  FDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IHALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  + V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++        K     I+E A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPEKVSDLGFRGAKTMAAKIIENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK-----LINRVATTY 292
           +  RLS +L  ++TDV +      L  +  +   LI     +EF +     L N+  TT 
Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEVLDNKAPTTV 300

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             DAA ++                            +Q SS+ +                
Sbjct: 301 VADAAKVK----------------------------TQESSMPN---------------- 316

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                    P     Y  I+    + +W+ KL+     +    T ++D   ++ + +   
Sbjct: 317 ---------PALETQYDTILTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGM--- 364

Query: 413 TLDQKDDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGH 467
                   SF VE     ++ L+     D  G    L K+  L  L+   E++   K+G 
Sbjct: 365 --------SFAVEAGKAAYLPLA----HDYVGAPQQLDKQFALEKLRPILEDDKVKKVGQ 412

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           N+KYD  VL   GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I   
Sbjct: 413 NLKYDISVLANAGIKLQGVVFDTMLESYVFNSVASRHDMDGLAIKYLGHKNIGFEDIAGK 472

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQ 582
               +  ++I       +A E++++ L+L   L P+L  E +L  V+  ++ P+I V+S 
Sbjct: 473 GAKQLTFNQIPLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSD 532

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G+ ID  LL Q S E+++ + +LEE  Y+++GEKFNL SPKQL  + F KL +P  
Sbjct: 533 IERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPIT 592

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  G   T  + L ++   D P+ K ILE R LSK+KSTY D LP  +N +T RVHT 
Sbjct: 593 KKTPKGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A+  TGRL+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH++
Sbjct: 652 YHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L + F    DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL 
Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLD 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR+EA  YI  YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R  
Sbjct: 772 IPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTAS 941
            ERAAINAP+QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++  T  
Sbjct: 832 AERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLK 891

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q +   M KA +    L V L     + +NW E
Sbjct: 892 QKVCELMAKAAI----LDVALLAEAGIGDNWDE 920


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 361/1009 (35%), Positives = 551/1009 (54%), Gaps = 103/1009 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L+L+D  + I+R ++A    P ++ K  G+  +AI GF N L  +++  + +    H
Sbjct: 3   QKRLYLLDAYALIFRGYFAFIKNPRINSK--GMDTSAIMGFMNALMDVIKREKPD----H 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    T+R E+Y +YKA+R + PE +   +P ++   +A  IP IE+ GFEADD+
Sbjct: 57  LAVAFDKGGSTYRYEMYQEYKAHRDETPEAIKIAVPYIQDLLKAMHIPIIEVAGFEADDL 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175
           I T    AEKE F V +++ DKD  QLVS    +Y   +     + + I+ WG+P     
Sbjct: 117 IGTLAKQAEKEDFKVYMVTPDKDFAQLVSENIFMYKPAR-----MGNDIEIWGVPEVLAK 171

Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
                PE+++    + GD+ DNIPG+PG+G KTA   L+EYG++EN+L N  ++K    +
Sbjct: 172 FEIERPEQVIDFLGMMGDAADNIPGLPGVGEKTAKKFLKEYGSIENLLANTHQLK-GAIK 230

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF----TKLIN 286
           + I    E   LS+KL  +  D P+T       L   +  +     + LEF    T+   
Sbjct: 231 DKIEANKEKGILSKKLATILLDCPVTFNASTYELSKPDVEKTDELFQELEFRQMKTQFDK 290

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
              T  D D        +D N  +N  I  +T + + T          SDQ S       
Sbjct: 291 YFGTGKDYDE-------IDTNENDNSQIQKKT-VAKKTNEDQFDLFGFSDQESG------ 336

Query: 347 PQKLFLERLQKLSQYPINNDS-YTKIVNTKDIQQWVQ----------KLETIGSASFKII 395
                           I  DS Y K+ NT+   Q ++           L    S  F   
Sbjct: 337 ---------------EIKTDSHYAKLENTEHFYQSIEGDFAVKLLLQNLLNQTSVCFDTE 381

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
           T  +DA +++ + ++ S         F+    F        +D+       + +    K 
Sbjct: 382 TTGIDALNAQLVGMSFS---------FEKGKAFYVPFPENQEDA-------QVLADKFKP 425

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
           FFE+E   KIG NIKYD  +L  YG+ ++G   D M+  Y+++     H++  +++ +L 
Sbjct: 426 FFESESIEKIGQNIKYDLKILSHYGVQIKGKLFDTMIAHYLINPDMR-HNMDVLSETYLK 484

Query: 515 YTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
           Y+ K I     K  K+   +  +S  +++E+A E++++  QL     P L   +   ++E
Sbjct: 485 YSPKSIEDLIGKKGKNQKSMRDVSLEEIKEYAAEDADITYQLKQNFSPILDKAETKKLFE 544

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P+I V++ ME+ GI +D   LK +SAE++    +LE+ IY+ +GEKFNL+SPKQLG
Sbjct: 545 EIEIPLIPVLAAMELEGINLDVPFLKSMSAEMALESNALEQKIYETAGEKFNLASPKQLG 604

Query: 631 DILFTKLKFPSGAK---TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           D+LF K+K   GAK   TKTGQ+ T  + L  +   DNPI+K+ILEWRQ+ K++STY D+
Sbjct: 605 DVLFDKMKI-GGAKQKKTKTGQYATGEEILSYL-ANDNPIVKDILEWRQMVKLQSTYIDA 662

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745
           LPN ++K+T RVHT Y      TGRL+S  PNLQNIP++T+ G+ IR+AFI P  +   L
Sbjct: 663 LPNQVDKKTGRVHTDYMQTVAATGRLSSNNPNLQNIPVRTERGRLIRKAFI-PRNENYTL 721

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ISADYSQIELRI+A ++    +   F+N+ DIH+  AA++F V +E V+ + R +AKT+N
Sbjct: 722 ISADYSQIELRIIAALSGEENMIAAFQNNQDIHKSTAAKVFNVALEDVTKEQRSNAKTVN 781

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F IIYG+S F L+ Q  + R E+A+ I  Y+  +P +  Y+    +F R+NGYV+T+ GR
Sbjct: 782 FGIIYGVSAFGLSNQTSLSRKESAELIDAYYATYPKLKSYMSNQVDFARENGYVQTVLGR 841

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +INS    +++  ER A+NAPIQGSAADI + AMI++HK L      +KMLLQ+H
Sbjct: 842 RRYLKDINSANMMVKSGAERNAVNAPIQGSAADIIKIAMINIHKKLTQENWQSKMLLQVH 901

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DELVF+V   E+     +I + ME A      + VPL V I +  NW E
Sbjct: 902 DELVFDVHNSELEKIQPMIKYEMENA----FKIDVPLDVEIGIGKNWLE 946


>gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169]
          Length = 956

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 365/989 (36%), Positives = 550/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 30  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 84

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 85  TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 144

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++    AL 
Sbjct: 145 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 204

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 205 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 263

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ + I  + + L+          P L +  + LEF K + + A   +       
Sbjct: 264 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 318

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+     D T+                S QTP             
Sbjct: 319 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 341

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 342 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 396

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L  + +LS  K   EN +  KIG ++KYD  +  
Sbjct: 397 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 451

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 452 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 511

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 512 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 571

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 572 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 631

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 632 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 687

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 688 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 747

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 748 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 807

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 808 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 867

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 868 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 925

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VPL V I +  NW++
Sbjct: 926 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 954


>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
 gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
          Length = 928

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 351/991 (35%), Positives = 546/991 (55%), Gaps = 100/991 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   LVDGSS+++RAF+  P L+    G    AI G  NML  L+    K+   +H AV+
Sbjct: 15  NPFILVDGSSYLFRAFHGMPPLTNSK-GQDTGAIYGVINMLRSLI----KQFSPTHMAVV 69

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++IY +YKANRP +PE L  Q+  +    +A G+P I   G EADD+I T 
Sbjct: 70  FDAKGKTFRDDIYKEYKANRPSMPEELRSQIEPLHKIIRAMGLPIIVESGVEADDVIGTL 129

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K G    I + DKD+ QLV+    L +T+    +D + V++K+GIPPE ++   A
Sbjct: 130 ADQASKLGIPTLISTGDKDMAQLVNEHVTLINTMNNHVMDPQGVVEKFGIPPELVIDFLA 189

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GD +DNIPG+PG+G K+A  LLQ  G++ +I  N  +I        KK  + + EY E
Sbjct: 190 LKGDKVDNIPGVPGVGDKSALGLLQGIGSINDIYENLDKIASLDFRGAKKMADKMREYEE 249

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            ARLS  L  ++ DV +                                     DC+  +
Sbjct: 250 QARLSYTLATIKLDVEM-------------------------------------DCNPTS 272

Query: 299 IEPVVLDINTTENKGIAIETEIDR---DTT------IKTSQFSSLSDQTSKINSEQTPQK 349
           + PV  D +    K +  E E  R   D T       +T Q  S SD+ S  +  Q    
Sbjct: 273 LSPVAADYSVL--KELFAELEFKRWLKDATDALNNGAETEQAMSASDEPSPKSGVQV--- 327

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
                            +Y  I+    +++W  KL+     +F   T +++   ++ + +
Sbjct: 328 -----------------TYQTILTQDALEKWFAKLQQADLFAFDTETTSLNYMQAELVGM 370

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           + S +++ D     +   ++D      + +         +L+  K   E+++  K+G ++
Sbjct: 371 SFS-IEEGDAAYLPLAHDYVDAPQQLDRSA---------VLALFKPLLEDKNKAKVGQHL 420

Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525
           KYDK VL  Y I+++G   D ML SYVL+S  + HD+ S+AQ +L  +    ++I     
Sbjct: 421 KYDKNVLANYDINLQGIAYDTMLESYVLNSVATRHDMDSLAQYYLGLSTVHFEDIAGKGA 480

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQME 584
             +  ++I   Q  ++A E++++ L+L   +  KL    +L  V   ++ P+  V+++ME
Sbjct: 481 KQLTFNQIPLDQAAQYAAEDADITLRLHNHIWQKLHQTPELASVLTEIEVPLATVLAKME 540

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G+ ID   L Q S +++  ++ LE  +++L+GE+FNL S KQL +ILF KL  P   K
Sbjct: 541 QFGVLIDSQKLSQQSQDLATRIMQLEREVHELAGEEFNLGSTKQLQEILFNKLSLPVLKK 600

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T  G   T+ + L+++     P+ K ++E+R LSK+K+TY D LP  IN R+ RVHT Y 
Sbjct: 601 TPKGAPSTSEEVLQELAL-TYPLPKLLMEFRVLSKLKNTYTDKLPKMINPRSGRVHTSYH 659

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A T TGRL+S EPNLQNIPI+T+ G+++R+AFI+ P  K+++ADYSQIELRI+AH+++ 
Sbjct: 660 QAITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIARPGYKIVAADYSQIELRIMAHLSQD 719

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    DIH   AAE+F V++ +V+ + RR+AK INF +IYG+S F L+ QL + 
Sbjct: 720 EGLLKAFSQGKDIHTATAAEVFNVSLTEVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVS 779

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  Y+  YF R+PG+ +Y+E ++   ++NGYV T+FGRR++  +IN+     R   E
Sbjct: 780 RHDAQHYMDLYFERYPGVLKYMEDSRIVAKENGYVSTVFGRRLYLPDINASNGLRRKGAE 839

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQI 943
           RAAINAP+QG+AADI ++AM+ V   ++      T+M++Q+HDEL+FE+ E+ +      
Sbjct: 840 RAAINAPMQGTAADIIKKAMLKVDAWIDTLPSDQTRMIMQVHDELIFEIKEQNVENDKNT 899

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           IV  MEKA    ++L VPL V   V  NW +
Sbjct: 900 IVDLMEKA----VSLDVPLIVEAGVGENWDQ 926


>gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E]
          Length = 959

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 366/989 (37%), Positives = 550/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 33  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 88  TKAPTFRHNLSETYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++    AL 
Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ + I  + + L+          P L +  + LEF K + + A   +       
Sbjct: 267 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAQLLNLP----- 321

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+T                 D T    S QTP             
Sbjct: 322 ------HQPTDKALSIDTH----------------DNTP---SSQTPIP----------- 345

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 346 -PIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L  + +LS  K   EN +  KIG ++KYD  +  
Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDT 574

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VPL V I +  NW++
Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957


>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 923

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 360/988 (36%), Positives = 540/988 (54%), Gaps = 91/988 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   R     +  AV+
Sbjct: 7   NPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSRYRP----TQMAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFRNE+Y +YKA+RP +P+ L  Q+ PL R+  +A GIP I I G EADD+I T
Sbjct: 62  FDAKGPTFRNEMYQEYKAHRPPMPDDLRSQIAPLHRI-IKALGIPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  EG +V I + DKD+ QLV+    L +T+ +  +  E V  K+G+ PE ++ L 
Sbjct: 121 IAIQAGNEGRSVLISTGDKDMAQLVNEHITLINTMTDTILGPEEVATKFGVGPELIIDLL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           A+ GD  DNIPG+PG+G KTA  +L   G +  +L     +        K     I + A
Sbjct: 181 AMMGDKADNIPGLPGVGEKTALAMLTGAGGVAKLLAEPDCVTDLGFRGAKTMAAKIRDNA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E   LS KL  ++TDV +      L L + N   LI+    +EF + +  V         
Sbjct: 241 EMLELSYKLATIKTDVTLEQDWHQLSLSEPNRDELIACYGEMEFKRWLAEV--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                 +D  + + T   +  ++Q     + ++P    +E    
Sbjct: 292 ----------------------LDNKSPLGTKAAAPQANQ----ETTESPAAAVIET--- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  ++   ++  W+ KL      +    T ++D   ++ + +        
Sbjct: 323 ---------QYHTLLTESELDAWLDKLSKAELIAVDTETTSLDYMQAELVGL-------- 365

Query: 418 DDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYD 472
              SF +E     ++ L      D  G  + L +E  L+ LK   EN    K+G N+KYD
Sbjct: 366 ---SFAIEAGKAAYLPLG----HDYPGAPSQLPREATLAKLKPLLENPDIKKVGQNLKYD 418

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
             VL   GI ++G   D ML SYV +S  S HD+  +A K+L +   + +EI       +
Sbjct: 419 MSVLANAGIQLKGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQL 478

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITG 587
             ++I+  Q   +A E++++ L+L   L P+L  E+ L  V+  L+ P+I+V+S +E  G
Sbjct: 479 TFNQIALEQAAPYAAEDADITLRLHQHLWPRLSKEEGLESVFTELELPLIEVLSDIERRG 538

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  LL Q S E+++ +  LE++ ++++GE FNLSS KQL ++ FTKL +P   KT  
Sbjct: 539 VLIDSMLLGQQSEELARKIDELEQHAHEIAGEPFNLSSTKQLQELFFTKLGYPVIKKTPK 598

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + L ++   D P+ K ILE R L+K+KSTY D LP  IN RT RVHT Y  A+
Sbjct: 599 GAPSTAEEVLVELAL-DYPLPKIILEHRSLTKLKSTYTDKLPLMINGRTGRVHTSYHQAN 657

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIPI+T+ G++IR+AF++P  K++++ADYSQIELRI+AH+++   L
Sbjct: 658 AATGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGL 717

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F    DIHR  AAE+F V  E V+ + RR AK +NF +IYG+S F LA QL IPR+E
Sbjct: 718 LRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNE 777

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+ +Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAA
Sbjct: 778 AQSYIDTYFKRYPGVLKYMEETRAMASEQGYVSTLFGRRLYLPEIRDRNAMRRQAAERAA 837

Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMI++   ++ + +   +M++Q+HDELVFEV  ++     + +  
Sbjct: 838 INAPMQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVHDELVFEVDADKADALKEKVCE 897

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M  A     +L VPL     + +NW +
Sbjct: 898 LMAAAA----SLDVPLLAEAGLGDNWDQ 921


>gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183]
 gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175]
 gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183]
 gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175]
          Length = 921

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 363/989 (36%), Positives = 540/989 (54%), Gaps = 93/989 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQP----SHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+  +A G+P I I G EADD+I 
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IRALGLPLISISGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A  E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++ L
Sbjct: 120 TIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I+E 
Sbjct: 180 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIEN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+  +LS +L  ++TDV +      L ++  +   LI     +EF + +  V        
Sbjct: 240 ADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEV-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                  LD   T N  I   +E   D+T       +++ Q                   
Sbjct: 292 -------LDNKITANTSIDAASETQEDST----PVEAIATQ------------------- 321

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I+   ++  W+ KL+     +    T ++D   ++ + I       
Sbjct: 322 -----------YDCILTEAELDAWIAKLKQADLMAVDTETTSLDYMVAELVGI------- 363

Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNT-LTKEI-LSYLKKFFENEHFLKIGHNIKY 471
               SF VE     ++ L+     D  G  T + K + L  L+   E+    K+G N+KY
Sbjct: 364 ----SFAVEAGKAAYLPLT----HDYVGAPTQIDKTVALEKLRPLLEDPKLKKVGQNLKY 415

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
           D  +L   GI ++G   D ML SYV +S  S HD+  +A K+L +   + +EI       
Sbjct: 416 DISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQ 475

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586
           +  ++I       +A E++++ L+L   L P+L  E +L  ++  ++ P+I V+S +E  
Sbjct: 476 LTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFIEVELPLIQVLSDIERQ 535

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID  LL Q S E+++ + +LEE  YD++GEKFNL SPKQL  + F KL +P   KT 
Sbjct: 536 GVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTP 595

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G   T  + L ++   D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A
Sbjct: 596 KGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQA 654

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           +  TGRL+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   
Sbjct: 655 NAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    DIHR  AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR 
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI  YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERA
Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834

Query: 887 AINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AINAP+QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++     + I 
Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTIC 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M +A     +L V L     + NNW E
Sbjct: 895 TLMAQAA----DLDVELLAEAGIGNNWDE 919


>gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8]
          Length = 956

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 365/989 (36%), Positives = 550/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 30  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 84

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 85  TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 144

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++    AL 
Sbjct: 145 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 204

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 205 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 263

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ + I  + + L+          P L +  + LEF K + + A   +       
Sbjct: 264 ATIVTNLKLAISFDDITLDHSQETTIERAPALYALFEELEFKKEMAQTAELLNLP----- 318

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+     D T+                S QTP             
Sbjct: 319 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 341

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 342 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 396

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L  + +LS  K   EN +  KIG ++KYD  +  
Sbjct: 397 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 451

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 452 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 511

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 512 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 571

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 572 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 631

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 632 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 687

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 688 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 747

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 748 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 807

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 808 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 867

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 868 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 925

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VPL V I +  NW++
Sbjct: 926 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 954


>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
 gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
          Length = 923

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 356/974 (36%), Positives = 550/974 (56%), Gaps = 62/974 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  EG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLK-GKISQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +  V   
Sbjct: 238 ASIVCDLPLELDWHELKLIDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYKQQV--- 294

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                    ++ E+    +I+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 295 -----SQAVVQNEVKPADSIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A                  
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAQDAYYV-PLA------------------ 385

Query: 427 IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                  HT +++  +  L +E IL+ +K   ENE   KIGH++KYD  +   +GI ++G
Sbjct: 386 -------HTYENAPQQ--LNREQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKG 436

Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
            + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +
Sbjct: 437 WYFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVATHY 496

Query: 542 AIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L  +S 
Sbjct: 497 AAEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSV 556

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E +K +  LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I
Sbjct: 557 EFAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI 616

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNL
Sbjct: 617 ---EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNL 673

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR 
Sbjct: 674 QNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRR 733

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+P
Sbjct: 734 TAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYP 793

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI 
Sbjct: 794 GIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADII 853

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI V K L   K   K+LLQ+HDELVFEV +      S+ I + ME      + + V
Sbjct: 854 KLAMIEVDKILP--KDQAKLLLQVHDELVFEVDQNIADELSKQIANVMESV----LEISV 907

Query: 961 PLKVNIKVSNNWQE 974
           PL V +    NW +
Sbjct: 908 PLVVEVGQGLNWDD 921


>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
 gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
          Length = 904

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 342/975 (35%), Positives = 537/975 (55%), Gaps = 84/975 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+ + + E    + A +FD
Sbjct: 5   LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVINMLRKLVLDHKAE----YAACVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IYP+YKA+RP +PE L  Q+  +  A +A G P + ++G EADD+IAT   
Sbjct: 60  ARGGTFRDDIYPEYKAHRPSMPEDLAAQVEPIHAAIRALGWPVLAVEGVEADDVIATLAR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G    + + DKDL QLV+P   L +T+  E +D   V+ K+G+P +++V    L 
Sbjct: 120 RATEAGLHTIVSTGDKDLAQLVNPQVTLVNTMTGEVLDETGVVNKFGVPADRIVDYLMLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTA   L E+G++E+++ NA  IK      N+ E      ++R+L
Sbjct: 180 GDTVDNVPGVTKVGPKTAVKWLSEFGSIEHLIQNADGIKGVAG-NNLREAIPNFPMTRQL 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           + ++              +DC+   L +FL +LE                 +++P     
Sbjct: 239 LTVK--------------DDCD---LSAFLTSLE-----------------DLKP----- 259

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                      TE+DRDT  +            +++ +         R+ +++       
Sbjct: 260 -----------TELDRDTLNRLYDRYGFRTWLRELSGDAERVPAGDARVAEVAHAAPVEQ 308

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425
            Y  I        W+ + E     +    T ++D   ++ + +           S  VE 
Sbjct: 309 QYQIITEWPAFDAWMARAEATPLVALDTETTSLDEMQARLVGL-----------SMAVEP 357

Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I L+ H   ++ G     +E+L  L+ + E+    K+ H+ KYD  V    GI++
Sbjct: 358 GVACYIPLA-HRGPEA-GTQLPKQEVLERLRGWLEDATRSKLLHHAKYDTHVFANEGIAL 415

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           RG  ED ML +YVL+S R    +  +AQ++L  +    +++       I  D+++  +  
Sbjct: 416 RGVTEDTMLQAYVLESHRGV-GLNDLAQRYLGRSGVNYEDLCGKGAKQIGFDEVAVDRAG 474

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++  LQL   LRP +  E L  +Y +L+  +  V+  +E  G+++D + L + S
Sbjct: 475 FYAAEDADFTLQLHQALRPGVTGE-LERIY-KLELEVSRVLVAIERNGVKVDAEELGRQS 532

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + +L+LE+  Y+L+G+ FNL+SPKQLG+ILF ++  P   KT  G   T  + L +
Sbjct: 533 HELGREMLALEQRAYELAGQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSK 592

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D P+ + +LE+R LSK+KSTY D LP  IN  T RVHT YS A+ +TGRLAS +PN
Sbjct: 593 L-AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPN 651

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T  G+++R AF++     L+SADYSQIELRI+AH++    L + F    DIHR
Sbjct: 652 LQNIPVRTLAGRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDANLQRAFAAGEDIHR 711

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FGV + +V+ + RR AK INF +IYG+  F LA+ L I R  A  YI RYF R+
Sbjct: 712 ATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARY 771

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+  Y++ T+   R+ GYVET+FGRR+   +I +     R   ERAAINAP+QG+AAD+
Sbjct: 772 PGVARYMDDTRRLAREQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADL 831

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++V   L   +L+ ++++Q+HDELV EVP  E+    + +   M +       LR
Sbjct: 832 IKMAMVAVQDWLVSQRLSARLIMQVHDELVLEVPAVELDLVRETVPRLMSEVA----ALR 887

Query: 960 VPLKVNIKVSNNWQE 974
           VPL   + V +NW++
Sbjct: 888 VPLIAEVGVGHNWEQ 902


>gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1]
          Length = 959

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 365/989 (36%), Positives = 550/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 33  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 88  TKAPTFRHNLSETYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++    AL 
Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ + I  + + L+          P L +  + LEF K + + A   +       
Sbjct: 267 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 321

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+     D T+                S QTP             
Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPIP----------- 345

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 346 -PIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L  + +LS  K   EN +  KIG ++KYD  +  
Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDT 574

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHNIGNLIKTAMQNAL 928

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VPL V I +  NW++
Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957


>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
 gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
          Length = 896

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 371/977 (37%), Positives = 557/977 (57%), Gaps = 96/977 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+ +RAF+A P L+    G P  AI G  NM+ K++++ + E IA    V+FD
Sbjct: 5   LILIDGSSYFFRAFHALPPLTNS-KGQPTGAIYGVANMVKKIIKDYQPEEIA----VVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+E YP+YKA+RP +P+ L  Q  PL++L  QA G+P + I G EADD+I T  
Sbjct: 60  AKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQL-LQAMGLPLLIIDGVEADDVIGTLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A ++G  V I + DKD+ QLV+    L +T+    +DI+ V  K+G+ PE+++    L
Sbjct: 119 KQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DNIPG+   G KTA   L EY  L+N+L +A+ I  K     I EY         
Sbjct: 179 IGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGK-----IGEY--------- 224

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
              LR  +P      HL L      +L++    LE    +N++        A+ E ++  
Sbjct: 225 ---LRASIP------HLPLSK----KLVTIKTDLELPLNLNQLMPK----PADNEQLI-- 265

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                        ++ R+   K    S L +   +  ++++P+++             NN
Sbjct: 266 -------------KLTRELEFK----SWLKELLQEEENQKSPKEMDAS----------NN 298

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTSFK 423
            SY  I   + +  W+ KLE   S  F I T+T  +D   ++ + I+++   ++++ S+ 
Sbjct: 299 KSYEIITTHQQLNHWLNKLEQ--SQQFCIDTETTNLDVMQAELVGISLAV--EEENASY- 353

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                I L+ HT     G   L KE +L+ LK   EN    KIG NIKYD  VL  YGI+
Sbjct: 354 -----IPLA-HTD----GSTQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYGIT 403

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           ++G   D ML SYVL+SG   HD+ S+A K+L Y   + +++       +  D+I   + 
Sbjct: 404 LKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVEKA 463

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A E++++ L+L   L P ++ E L +V   ++ P++ V++ MEI G+ ID  +L++ 
Sbjct: 464 GIYAAEDADITLRLHHKLYP-MLDEPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKH 522

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            + + + + SLE+    L+G+ FNL+SPKQL +ILF + K P  AKT TGQ  +TA+ + 
Sbjct: 523 GSRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQ-PSTAESVL 581

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D  +   ILE+R LSK+ STY D+LP  IN +T RVHT Y+ A   TGRL+S +P
Sbjct: 582 QELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  DIH
Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+EIF  N+E VS + RR AK +NF +IYG+S F LA Q+ + R +A  YI  YF R
Sbjct: 702 AATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYFRR 761

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY+E+T+    Q GYVET+FGRR++  EINS     +   ER AIN P+QG+AAD
Sbjct: 762 YPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTAAD 821

Query: 899 ITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I ++ M++V       K  + KM++Q+HDELVFEV +E +     II   ME+     + 
Sbjct: 822 IIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECHAIIHKLMEQT----VK 877

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V+I + +NW +
Sbjct: 878 LSVPLVVSIGIGSNWDD 894


>gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7]
          Length = 956

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 365/989 (36%), Positives = 550/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 30  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 84

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 85  TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 144

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++    AL 
Sbjct: 145 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 204

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 205 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 263

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ + I  + + L+          P L +  + LEF K + + A   +       
Sbjct: 264 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 318

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+     D T+                S QTP             
Sbjct: 319 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 341

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 342 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 396

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L  + +LS  K   EN +  KIG ++KYD  +  
Sbjct: 397 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 451

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 452 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 511

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 512 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 571

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 572 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 631

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 632 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 687

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 688 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 747

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 748 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIGVDRAVAQDYI 807

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 808 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 867

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 868 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKIAMQNAL 925

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VPL V I +  NW++
Sbjct: 926 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 954


>gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 923

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 352/973 (36%), Positives = 544/973 (55%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  EG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLK-GKLSQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +      
Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVEALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +     ++ E+    +I+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 292 --QQASQTIVQNEVKPAESIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A       Q+ D       
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDRD----- 398

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                                +IL+ +K   ENE   KIGH++KYD  +   +GI ++G 
Sbjct: 399 ---------------------QILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497

Query: 543 IENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S E
Sbjct: 498 AEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +K +  LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I 
Sbjct: 558 FAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 617 --EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR  
Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDEALVHAFQHGQDVHRRT 734

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+PG
Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYPG 794

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V K L   K   K+LLQ+HDELVFE  +      S+ I   ME      + + VP
Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEADQNIADELSKQIATVMESV----VKISVP 908

Query: 962 LKVNIKVSNNWQE 974
           L V +    NW +
Sbjct: 909 LVVEVGQGQNWDD 921


>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
 gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
          Length = 906

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 352/977 (36%), Positives = 547/977 (55%), Gaps = 85/977 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R     P  AI G  NML +L     KE    + A +FD
Sbjct: 4   LVLVDGSSYLYRAFHALPDL-RNRLNEPTGAIYGVLNMLRRLY----KEYQPDYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR EIYP YKANRP +P  L  Q+  +    +A G P +  +  EADD+I T   
Sbjct: 59  AKGKTFREEIYPQYKANRPPMPADLAGQINPLYACIRAMGWPLLVEEQVEADDVIGTLAR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  E     I + DKD+ QLV+P   L +T+  E +D   V++K+G+ P +++   AL 
Sbjct: 119 RAAGERIQCVISTGDKDIAQLVAPGIRLVNTMNSESLDEAGVLQKFGVMPAQIIDFLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DNIPG+  +G KTA   L +YG+L N++ +A  IK     EN+ +  +  ++SR+L
Sbjct: 179 GDSVDNIPGVEKVGPKTAVKWLNQYGSLNNLIAHAHEIK-GVVGENLRKALDWLQVSREL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           + ++                C+ P  + +   +     + R+   Y+             
Sbjct: 238 LTIK----------------CDVPLAMGWQDLVAAPLDVARLMALYE------------- 268

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                                  +F S   +  + +SE  P  + +     L     N+D
Sbjct: 269 ---------------------HLEFRSWLRELRQSDSETGPATIPM--YDPLVPGERNSD 305

Query: 367 S--YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           S  Y  I+     ++WVQ+ E+    S    T +++   ++ + +++ T           
Sbjct: 306 SRDYQIILTDSQFEEWVQQCESAELVSIDTETTSLNPMEAELVGLSLCTEPG-------- 357

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L+ H     +  N   +++L  LK + EN    K+G N+KYD+ V   +G+ + 
Sbjct: 358 HAAYIPLAHHYQGVPSQLNR--EQVLQRLKPWLENSDIPKVGQNLKYDRHVFANHGVMLN 415

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQE 540
           G   D +L SYVL+S   SHD+ S+A++ L   + +  ++       I  +++   Q   
Sbjct: 416 GIAHDTLLQSYVLES-HLSHDLDSLARRHLDIQTISYDDVTGKGAKRIGFEQVEIQQAGI 474

Query: 541 HAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           +A E++++ L+L   L P  I+ K   L H+Y++++ P+++V+ ++E  G+ +D DLL++
Sbjct: 475 YAAEDADIPLRLHHFLYP--IISKDAHLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLRE 532

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+++ L+ LE+  + L+G  FNL+S KQ+ +ILF + K P   KT  G   T  + L
Sbjct: 533 QSGELARQLVILEQQAHSLAGRAFNLNSTKQIQEILFGQHKLPVIKKTPKGAPSTDEEVL 592

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           +Q+   D P+ K +L++R L+K++STY D LP  +N++T RVHT Y+ A  +TGRLAS +
Sbjct: 593 QQLAL-DYPLPKILLDYRSLAKLRSTYIDKLPQMVNRQTGRVHTNYAQAVAVTGRLASND 651

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++T  G++IR AFI+P    +ISADYSQIELRI+AHI++   L + F    DI
Sbjct: 652 PNLQNIPVRTPEGRRIREAFIAPSGWYIISADYSQIELRIMAHISQDAGLIRAFLGGQDI 711

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AAE+FG+++ +V+ + RR+AK INF +IYG+S F LATQL I RS A  +I RYF 
Sbjct: 712 HSATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMSEFGLATQLGIDRSAARAFIDRYFA 771

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ +Y+++T+   RQNGYVET+ GRR+   +I S + + R   ERAAINAP+QG+AA
Sbjct: 772 RYPGVADYMQRTRELARQNGYVETVLGRRLQLPDIRSSQHNRRMGAERAAINAPMQGTAA 831

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMISVH+ L    L +K+++Q+HDELV EV E+E+    + ++  ME        
Sbjct: 832 DIIKLAMISVHQWLVKAPLQSKLIMQVHDELVLEVIEDELFVVKENLIILMENT----FK 887

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPLKV + V  NW +
Sbjct: 888 LDVPLKVEVGVGKNWDQ 904


>gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1]
          Length = 959

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 365/989 (36%), Positives = 548/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 33  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 88  TKAPTFRHNLSETYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++    AL 
Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ + I  + + L+          P L +  + LEF K + + A   +       
Sbjct: 267 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 321

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+     D T+                S QTP             
Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPIP----------- 345

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 346 -PIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L    +LS  K   EN +  KIG ++KYD  +  
Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +      +A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 515 AMDVASHYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VPL V I +  NW++
Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957


>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
 gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
          Length = 920

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 367/984 (37%), Positives = 536/984 (54%), Gaps = 96/984 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 15  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 69

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E+Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 70  AKGKTFRDELYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 129

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLVS    L +T+  E +D + V+ K+G+PPE++V   AL 
Sbjct: 130 EAERRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALI 189

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L RKL
Sbjct: 190 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRKL 248

Query: 247 VMLRTDVPITIPLEHL---ILEDCNGPRLISFLKA-LEFTKLINRV----ATTYDCDAAN 298
           V + T   +   LE +   +  D     L+  + A   F   +  V    A     DA +
Sbjct: 249 VTVETACDLAPHLESIDASLKSDGEARDLLRDIFARYGFKTWLREVDSAPAEGGGADAPD 308

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            EP  +         IA++T  + +T     QF +                         
Sbjct: 309 GEPAPV---------IAVDTPREYETIQTWEQFDA------------------------- 334

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W  KLE     +F   T  +D   ++ + +         
Sbjct: 335 ---------------------WFAKLEAAELTAFDTETTALDPMVARLVGL--------- 364

Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             SF VE     ++ ++ H   D   +  L  ++L+ LK + E+    K+G ++KYD  V
Sbjct: 365 --SFAVEPGKAAYLPVA-HRGPDMPEQLPL-DDVLARLKSWLESPDRKKVGQHLKYDAQV 420

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L  YGI + G E D +L SYVL+S R +HD+ S+A + L       +++       I  D
Sbjct: 421 LANYGIELNGIEHDTLLESYVLESHR-THDMDSLALRHLGVKTIKYEDVAGKGAKQIGFD 479

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +++ +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME  G+ I
Sbjct: 480 EVALAQAAEYAAEDADITLQLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLI 539

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L+  S EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G  
Sbjct: 540 DDARLQAQSNEIATRLVDLEAQAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAP 599

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +T
Sbjct: 600 STDEEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVT 658

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + 
Sbjct: 659 GRLASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRA 718

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  
Sbjct: 719 FSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKL 778

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINA
Sbjct: 779 YIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 838

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AAD+ + +MI+V   L   KLA++M++Q+HDELV EVP++E++   + +   M  
Sbjct: 839 PMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCG 898

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                  L+VPL   +    NW+E
Sbjct: 899 VA----KLKVPLVAEVGAGANWEE 918


>gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4]
 gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4]
          Length = 956

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 361/1004 (35%), Positives = 541/1004 (53%), Gaps = 98/1004 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS +++R ++A P   +   GL  NAI G  N L KL++        +H AV FD
Sbjct: 13  FILVDGSYYLFRTYHALPKTMQNSQGLVTNAIRGTLNALLKLMRRYHP----THMAVCFD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR+ +  +YKANRPK+   L  Q+P +     A GIP + I+G EADDII T  Y
Sbjct: 69  TKSPTFRHAMSEEYKANRPKMDIELAEQIPYIHRLVTALGIPLLRIEGAEADDIIGTLAY 128

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  EG  V I + DKD+MQL++    L D+   +  D   V++K+GI P++M+    L 
Sbjct: 129 RAVAEGHHVVISTGDKDMMQLINDCVILEDSFTGKITDSTGVVEKFGINPDQMIDFLTLM 188

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS D I G+PGIG KTA  LL EYGN++N+L N + IK +  + N+LEYA+   ++ +L
Sbjct: 189 GDSSDGIKGVPGIGKKTAKDLLNEYGNIDNMLKNVANIKGRAGK-NLLEYADDIPMNAQL 247

Query: 247 VMLRTDVPI----------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD- 295
             + TD+ +          T P  H+         L +    LEF    N +A+    + 
Sbjct: 248 ATIVTDLEVGQDWQDLKINTDPCAHI-------DELRALYSELEFR---NELASLDHPNH 297

Query: 296 -AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            A   + V      TE++              K+ Q S++ D T   + ++         
Sbjct: 298 PANGAQSVAHSQADTESQA----------QIAKSLQSSAIGDVTDSKSHDR--------- 338

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                       ++  I++       VQ L +  +  F I T+T   +  +   + +S  
Sbjct: 339 ------------AWHTILDEPAFDNLVQLLAS--APHFVIDTETTSVYWRQAELVGLSFA 384

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
            Q        E  +I L+     D   +  L ++ +L  LK   EN    KIG ++KYD 
Sbjct: 385 VQAH------EAYYIPLTHSLEGDELTEKQLDRDTVLVRLKSILENSSIGKIGQHLKYDA 438

Query: 474 LVLHRYGISMRG---------FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEIL 521
            +L  Y I++ G           D ML SYV+++  + H +  +A+ +L   + + +++ 
Sbjct: 439 HILSLYDINLLGNIHDKPNNWAMDTMLASYVINAAVTRHGMDDLARHYLQTQTISFEDVA 498

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMI 577
                 +  D+++     ++A E++++  QL+ L   KL  +    KLLH    L+ P  
Sbjct: 499 GKGAKQVSFDQVAIDIASDYACEDADITYQLFELFSQKLADDTNNAKLLHA---LEIPTA 555

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           +++ QME  GI I +  L ++S    + +++LE+  Y+++GE+FNL SPKQLG++LF KL
Sbjct: 556 EILCQMEAHGILIKRPFLNELSKRFDEEIIALEKRAYEVAGEEFNLGSPKQLGEMLFDKL 615

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
               G KTKTGQ+ T    L +I   D+P++   LE+R LSK+KSTY D+L N  +  T 
Sbjct: 616 GVAGGKKTKTGQYSTGEAVLSKI---DHPLVDITLEYRGLSKLKSTYTDALDNVADSETD 672

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVHT Y  A T TGRL+S +PNLQNIPI+T  G+ IR+AFI+P  + +++ADYSQIELR+
Sbjct: 673 RVHTSYHQALTSTGRLSSTDPNLQNIPIRTATGRLIRQAFIAPEGRVILAADYSQIELRL 732

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH +    L   F   LDIH   AAE+ G  +  V+   RR+AK INF ++YG+S F L
Sbjct: 733 MAHFSGDKNLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAINFGLLYGMSAFGL 792

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A QL++ RSEA DYI  YF R+PG+ +Y+  T+    ++GYVETI GR+++  +IN    
Sbjct: 793 AKQLQMSRSEAQDYIDMYFERYPGVKDYMINTRASAYEHGYVETILGRKLYTPDINHSNR 852

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            ++   ERAAINAP+QGSAAD+ + AMI+V K L  H+   KMLLQ+HDELVFEV   ++
Sbjct: 853 MVKQGAERAAINAPLQGSAADLIKLAMIAVDKVLPKHQ--AKMLLQVHDELVFEVDANKV 910

Query: 938 TTASQIIVHSMEKACLP-------KINLRVPLKVNIKVSNNWQE 974
              SQ+I  +M+             +N  VPL V      NW E
Sbjct: 911 DEISQLITDAMQNVLTATAVEKGWNVNFAVPLLVETDSGQNWDE 954


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 347/987 (35%), Positives = 543/987 (55%), Gaps = 114/987 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +++ ++LVDGS+++YRAFYA   LS    GLP NA+ GF NML KLL+  + E    + A
Sbjct: 11  EKSTIYLVDGSNYLYRAFYAIRELSNSR-GLPTNAVYGFTNMLIKLLRERKPE----YIA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E Y  YKA R   PE L+PQ+P ++   + F IP +E QG EADDII 
Sbjct: 66  ITFDLKGPTFRHETYAQYKATRKATPEALIPQIPYIKDIIRGFSIPILEQQGTEADDIIG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T       EG  V I+S DKD++QL+SP   + DT+ +   D+  V +++G+ PEK+  +
Sbjct: 126 TLACRFAGEGLKVIIVSGDKDMLQLLSPDVIMIDTMNDRTYDVAAVRERFGVDPEKVPEI 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             LTGD  DNIPGIPGIG K A  L++EYG++E IL N  R++  K R+++  Y E A L
Sbjct: 186 LGLTGDMSDNIPGIPGIGPKGALRLVEEYGSIEEILRNVERLRNPKLRDSVRVYGEQALL 245

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR L  +RT +P+                                   T+D + A ++  
Sbjct: 246 SRDLARIRTGIPL-----------------------------------TFDLEEARLQ-- 268

Query: 303 VLDINTTENKGIAIETEIDRDTT---IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                           E DR+      +  +FSSL  + S +                  
Sbjct: 269 ----------------EPDREVLTRLFRELEFSSLLQEFSVVED---------------- 296

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                ++S+T +   + +  +++ L+  G    +++  + +   ++ I +A+  LD  + 
Sbjct: 297 ---CGDNSHTLLRTPEAVAAFMEPLKEGGFLVLEMVLSSSEPMRAELIGVALG-LDSGNA 352

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I L    ++ S   ++L++E +   L  F  ++    +GH++K   +VL +
Sbjct: 353 G-------YIPLEPGAAEKSA--SSLSEEQVFPVLFPFLADKKIALVGHDLKTVLIVLSQ 403

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEIL-----KSRKSSI 528
            G+ ++    D M+ +Y+L+  R  ++++ I Q +L       RK+++     K   +S 
Sbjct: 404 KGVKVQNPLLDTMVAAYILNPARRGYELSEIVQDYLHRQVEPLRKKLVGGSSPKQSPASF 463

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P +++ D      A      I +L   L  K+    L  +++ ++ P++ V++ ME  G+
Sbjct: 464 PPERLRD-----FACRRVEAIGELASTLIEKMEETGLRELFDSVEMPLVAVLAAMEEKGV 518

Query: 589 QIDQDLLKQVSAEISKNLLSLEE-NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            +D  LLK++S E+  +LLSL E  IY L+GE+FN++SPKQL  ILF KL  P G KTK 
Sbjct: 519 LLDLHLLKEMSQELG-HLLSLSEAKIYALAGERFNIASPKQLQTILFEKLNLPKGKKTKG 577

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T  + L  +   ++ +   IL +R ++K+KSTY D+LP+ IN RT R+HT Y+   
Sbjct: 578 G-YSTDVEVLSNLAL-NHELPAEILAYRSMAKLKSTYIDALPSLINIRTGRIHTSYNQTV 635

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S  PNLQNIPI+T  G++IR+AFI+PP   ++SADYSQIELR+LAH+++   L
Sbjct: 636 AATGRLSSSNPNLQNIPIRTLEGKRIRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVL 695

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH   AA++FGV  E ++ +MRR AK INF ++YG+S F L+ +L IP+ +
Sbjct: 696 INAFAAGEDIHSRTAADVFGVFPEMINAEMRRQAKVINFGVLYGMSAFGLSRELGIPQKQ 755

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF ++  +  Y++      R+ GYV T+  RR +  EINS   ++R + ER A
Sbjct: 756 AQAYIDGYFKKYESVKTYLDGILQQARERGYVTTLLNRRRYLPEINSVNPAVRQLAERMA 815

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AAD+ + AM+ +   + +  + + M +Q+HDELVFEVP+EE      ++   
Sbjct: 816 INAPIQGTAADLIKMAMLRIADLIREKGMKSAMTMQVHDELVFEVPQEEKIALMNLVRQE 875

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME      + L+VPLKV+I    NW E
Sbjct: 876 MEGV----VELKVPLKVDIASGRNWDE 898


>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
 gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
          Length = 923

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 352/973 (36%), Positives = 543/973 (55%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  EG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLK-GKLSQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +      
Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVEALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +     ++ E+    +I+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 292 --QQASQTVVQNEVKPAESIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A       Q+ D       
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDRD----- 398

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                                +IL  +K   ENE   KIGH++KYD  +   +GI ++G 
Sbjct: 399 ---------------------QILVQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497

Query: 543 IENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S E
Sbjct: 498 AEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +K +  LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I 
Sbjct: 558 FAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 617 --EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR  
Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+PG
Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYPG 794

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V K L   K   K+LLQ+HDELVFE  +      S+ I   ME      + + VP
Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEADQNIAEELSKQIATVMESV----VKISVP 908

Query: 962 LKVNIKVSNNWQE 974
           L V +    NW +
Sbjct: 909 LVVEVGQGQNWDD 921


>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans]
          Length = 922

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 349/981 (35%), Positives = 534/981 (54%), Gaps = 69/981 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+  R E    + A +
Sbjct: 2   SRLVLIDGSSYLYRAFHALPPLTNAA-GEPTGALFGVVNMLRATLKE-RPE----YVAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
            D P  TFR+ +YP YKANRP +P+ L  Q+ P+ ++   A GI  +   G EADD+I T
Sbjct: 56  VDAPGKTFRDALYPQYKANRPPMPDELRAQVEPMCQI-VHALGITILRESGVEADDVIGT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCL 182
                  +G  VTI + DKD  QLV P   L +T+   ++D +  V++K+G+ P ++V L
Sbjct: 115 LALQGVGDGMDVTISTGDKDFAQLVRPGVQLVNTMSGSRMDSDAAVMEKFGVLPHQIVDL 174

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD+IDN+PG+   G KTAA  L +YG+L+ ++ NA  IK K   +N+        L
Sbjct: 175 LALMGDTIDNVPGVEKCGPKTAAKWLADYGSLDGVIANADAIKGKIG-DNLRAALGRLPL 233

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +R LV ++TDV ++     L L +    +L    +   FT+ +       D D     P 
Sbjct: 234 NRDLVTIKTDVVLSGGPRTLGLREPEPEQLRGLYQRYGFTQALR------DLDGGVAAPY 287

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           V    +   +G          T    ++ ++  D                     L    
Sbjct: 288 VASEASPSLRG----------TAAGYARAAAAPDGA-------------------LDPAL 318

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  +   +     + +L      +F   TD +DA  +  + +           SF
Sbjct: 319 AAKGHYAAVTTAEQFDALLARLRAADGFAFDTETDALDAMRANLVGL-----------SF 367

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEI--LSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            +E    D  +    D  G       +  L+ L    E+    K+G + KYD  VL R+G
Sbjct: 368 AIEPGHADY-LPLGHDYPGAPVQLDRVQALAALAPLLEDPAKRKVGQHGKYDLHVLRRHG 426

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           + + G+ +D ML S+VL+S  S HD+ S+A+++L Y     +++       I   +++  
Sbjct: 427 VQVHGYADDTMLESFVLNSTASRHDMDSLAKRYLGYDTVKYEDVAGKGAKQIAFSQVAID 486

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +A E++++ L+L   L  +L  E  L  VY  ++ P++ V++++E  G+ +D   L
Sbjct: 487 DATGYAAEDADITLRLHRALSAQLDAEPALARVYREIEMPLVPVLTRIEANGVCVDIAEL 546

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           ++ S  +S+ +L+ ++    L+G  FNL SPKQL  +LF +LK P+  KT  GQ  T  +
Sbjct: 547 RKQSQVLSQRMLAAQQKAVALAGRSFNLDSPKQLQAVLFDELKLPALLKTPKGQPSTNEE 606

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE I    + + + ILE+R L+K++STY D LP  +N  T RVHT Y  A   TGRL+S
Sbjct: 607 ALEAI-ADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGAATGRLSS 665

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH+++   L + F   +
Sbjct: 666 SDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSEDPGLLRAFSQGV 725

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR  AAE+FG  +E+VS   RR AK INF ++YG+S F LA  L I R EA DY+  Y
Sbjct: 726 DVHRATAAEVFGRTLEQVSANERRAAKAINFGLMYGMSAFGLARNLGIGRGEAQDYVALY 785

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+P + +++E+ +   R  GYVET+FGRR++ ++IN+ +  +R   ERAAINAP+QG+
Sbjct: 786 FSRYPAVRDFMERMREQARTQGYVETLFGRRLYLNDINAKQQGLRAGAERAAINAPMQGT 845

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAM+SV   L+DH+    M+LQ+HDELVFEV  + +      +   M  A    
Sbjct: 846 AADIIKRAMVSVDTWLQDHRARALMILQVHDELVFEVDADFVEILLPEVTWRMAAAA--- 902

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L+VPL V+  V +NW E +
Sbjct: 903 -ELKVPLVVDSGVGDNWDEAH 922


>gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
 gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
          Length = 948

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 344/998 (34%), Positives = 558/998 (55%), Gaps = 80/998 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFL+D  + I+R +YA    P ++ K  G   +AI GF N L+ +++  + +  
Sbjct: 1   MAVQKRLFLLDAYALIFRGYYALIKNPRVNSK--GQDTSAIMGFVNSLFDVIKREKPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD    + R E+Y DYKANR + PE +   +P+++   +A  +P IEI+G EA
Sbjct: 57  --HLAVAFDKGGSSERVEMYEDYKANRDETPEAIRIAVPIIQEILKAMHVPCIEIEGVEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DD+I T    AEKE + V +++ DKD  QLVS    +Y   +     + + I+ WGIP  
Sbjct: 115 DDLIGTLAKQAEKEDYQVFMVTPDKDYAQLVSENIFMYKPAR-----MGNGIEIWGIPEV 169

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   PE+++    + GD+ DNIPG+PG+G KTA   +++YG LE +L N  ++K  
Sbjct: 170 QKRFEVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIKQYGGLEGLLENTDQLK-G 228

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +E ++E AE  RLSRKL  + TD  +    E   L   +  ++      LEF +L ++
Sbjct: 229 KMKEKVIENAELGRLSRKLATIMTDCDVKFDAEQYELSQPDADKVQEIFDELEFRRLKDQ 288

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
               +  +A +     +    T  K +   +  ++       Q++        I    T 
Sbjct: 289 FIKIFSGEADSDTGAAVSGTETAKKLV---SSAEKAANAGAGQYNLFGGDEPAIEERNTR 345

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           + +      K +++      Y  +     +  +++ L    S  F   T  +D   ++ +
Sbjct: 346 KTI------KDTEH-----FYQSVAPGMAMNLFIKNLMKQTSVCFDTETTDLDPLQAELV 394

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            IA S          K +  ++       +         ++++  L+ FFE E   KIG 
Sbjct: 395 GIAFSWE--------KTKGFYVPFPSEKEE--------VQKLIEALRPFFEAEEIEKIGQ 438

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI------ 520
           N+KYD  VL +Y + ++G   D M+  Y+++     H++  +A+ +L+YT   I      
Sbjct: 439 NLKYDIKVLAKYDVEVKGKLFDTMIAHYLINPDMR-HNMDVLAETYLNYTPVSIEELIGK 497

Query: 521 -LKSRKS--SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
             K++KS   +P+D     Q  E+A+E+++V LQL    + +L       +++ ++ P++
Sbjct: 498 KGKNQKSMADVPVD-----QQTEYAVEDADVTLQLKEHFQKELGEANTQKLFDEIEIPLV 552

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V++ ME+ GI +DQ+ L  +S  ++ ++ SLE++IY+ +GE+FN+ SPKQLG+ILF KL
Sbjct: 553 QVLADMELEGINLDQEFLGSLSEALNNDIASLEKSIYEEAGEEFNIGSPKQLGEILFDKL 612

Query: 638 KF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           K      KT+TGQ+ +TA+D+      D+ I++++L++R LSK+KSTY D+LP  +N +T
Sbjct: 613 KLVDKPKKTRTGQY-STAEDVLSYLAPDHEIVQHVLDYRGLSKLKSTYVDALPAQVNAKT 671

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIE 754
            RVHT Y      TGRL+S  PNLQNIPI+T+ G+++R+AF+ P  +   L++ADYSQIE
Sbjct: 672 GRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFV-PRNEDYVLLAADYSQIE 730

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+A +++   + + F+   DIH   AA++F V I++V+ + R +AKT+NF IIYG+S 
Sbjct: 731 LRIIAALSQEETMMKAFQEGEDIHASTAAKVFNVPIDEVTREQRSNAKTVNFGIIYGVSA 790

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F L+ Q  + RSE+ + I  Y+  +P +  Y+ +  +F R+NGYV T+ GRR +  +INS
Sbjct: 791 FGLSNQTDLTRSESKELIDTYYKTYPKLRNYMSEQVDFARENGYVSTVLGRRRYLKDINS 850

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
             + +R   ER A+NAPIQGSAADI + AMI +H  L+D  L TKMLLQ+HDELVF+V +
Sbjct: 851 SNAVVRGAAERNAVNAPIQGSAADIIKIAMIKIHHKLKDKGLRTKMLLQVHDELVFDVYK 910

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E+    ++I   ME A      L VPL V + + +NW
Sbjct: 911 SELEEVQELIKSEMEHA----FKLDVPLDVEVGLGDNW 944


>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
 gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
          Length = 896

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 369/977 (37%), Positives = 557/977 (57%), Gaps = 96/977 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+ +RAF+A P L+    G P  AI G  NM+ K++++ + E IA    V+FD
Sbjct: 5   LILIDGSSYFFRAFHALPPLTNS-KGQPTGAIYGVANMVKKIIKDYQPEEIA----VVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+E YP+YKA+RP +P+ L  Q  PL++L  QA G+P + I G EADD+I T  
Sbjct: 60  AKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQL-LQAMGLPLLIIDGVEADDVIGTLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A ++G  V I + DKD+ QLV+    L +T+    +DI+ V  K+G+ PE+++    L
Sbjct: 119 KQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DNIPG+   G KTA   L EY  L+N+L +A+ I  K     I EY         
Sbjct: 179 IGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGK-----IGEY--------- 224

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
              LR  +P      HL L      +L++    LE    +N++        A+ E ++  
Sbjct: 225 ---LRASIP------HLPLSK----KLVTIKTDLELPLNLNQLMPK----PADNEQLI-- 265

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                        ++ R+   K    S L +   +  ++++P+++             NN
Sbjct: 266 -------------KLTRELEFK----SWLKELLQEEENQKSPKEMDAS----------NN 298

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTSFK 423
            SY  I   + +  W+ KLE   S  F I T+T  +D   ++ + I+++   ++D+ S+ 
Sbjct: 299 KSYEIITTHQQLNHWLNKLEQ--SQQFCIDTETTNLDVMQAELVGISLAV--EEDNASY- 353

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                I L+ HT     G   L KE +L+ LK   EN    KIG NIKYD  VL  YGI+
Sbjct: 354 -----IPLA-HTD----GSTQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYGIT 403

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           ++G   D ML SYVL+SG   HD+ S+A K+L Y   + +++       +  D+I   + 
Sbjct: 404 LKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVEKA 463

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A E++++ L+L   L P ++ + L +V   ++ P++ V++ ME+ G+ ID  +L++ 
Sbjct: 464 GIYAAEDADITLRLHHKLYP-MLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKH 522

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            + + + + SLE+    L+G+ FNL+SPKQL +ILF + K P  AKT TGQ  +TA+ + 
Sbjct: 523 GSRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQ-PSTAESVL 581

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D  +   ILE+R LSK+ STY D+LP  IN +T RVHT Y+ A   TGRL+S +P
Sbjct: 582 QELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  DIH
Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+EIF  N+E VS + RR AK +NF +IYG+S F LA Q+ + R +A  YI  YF R
Sbjct: 702 AATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYFRR 761

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY+E+T+    Q GYVET+FGRR++  EINS     +   ER AIN P+QG+AAD
Sbjct: 762 YPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTAAD 821

Query: 899 ITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I ++ M+++       K  + KM++Q+HDELVFEV +E +     II + ME+     + 
Sbjct: 822 IIKKTMLAISSWEHSQKSPSAKMIMQVHDELVFEVRKEAVEECHAIIHNLMEQT----VK 877

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V+I   +NW +
Sbjct: 878 LSVPLVVSIGTGSNWDD 894


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 368/1002 (36%), Positives = 556/1002 (55%), Gaps = 92/1002 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLIAQVE----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T 
Sbjct: 62  FDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 AVQAAKAGKDVLISTGDKDMAQLVNEHIMLINTMTNTLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G+++ I  N  ++ +   R        +    E
Sbjct: 182 LRGDSSDNIPGVKGVGEKTALALLQGIGSIQTIYQNLDKVAELSFRGAKTFAPKLEAEKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV +    + L     N   L++     EF K ++ V        AN
Sbjct: 242 MADLSYLLATIKTDVELEFRHDQLTTSPQNHDELVALFSQYEFKKWLSEVK-----GGAN 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             PV                     T  +  +  +  + T  + +E T  K+ ++R    
Sbjct: 297 --PV---------------------TQTEKVKIPNAYEVTQAVQNEPTFAKVNIDR---- 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS------ 412
                    Y  I  T  + +W++K++     +    TD++D+  +  + I+++      
Sbjct: 330 -------SKYETITETAALNRWLEKIQMEKCIALDTETDSLDSMRANLVGISLALASGEA 382

Query: 413 -------------TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFE 458
                        +  Q D  S ++ET+  +L+         KN L     L+ LK   E
Sbjct: 383 CYIPLAHKTLVTTSAGQGDLFSSEMETVGYELA---------KNQLNLTACLAQLKPILE 433

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYT 516
           N    KIG NIKYD  V   +GI+++G   D ML SY L+S GR  H++  ++ ++L + 
Sbjct: 434 NPEIKKIGQNIKYDLTVFANHGINVQGVAFDTMLESYTLNSTGR--HNMDDLSDRYLGHK 491

Query: 517 RKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERL 572
             E   I    K+ +  D+I  S   E+A E+++V ++L  +L  +L+ E  L+ +++ +
Sbjct: 492 TIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLWSQLVQEPTLVKLFDEI 551

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P++ V+S++E  G+ ID   LKQ S+EI + L  LE+ ++  +G  FNL+S KQL +I
Sbjct: 552 ELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVHSEAGSVFNLASTKQLQEI 611

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF KL  P   KT  G   T  + LE++    + + K ++E R LSK+KSTY D LP  I
Sbjct: 612 LFEKLGLPILKKTPKGAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMI 671

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N +T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQ
Sbjct: 672 NAKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQ 731

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH+A    + + F    DIHR  A+EIFGV +++V+ + RR+AK INF +IYG+
Sbjct: 732 IELRIMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGM 791

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL I R++A  Y++ YF+R+P + +++   K    + GYVET+ GRR++  EI
Sbjct: 792 SEFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEKGYVETLLGRRLYLPEI 851

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S  +  R   ER AINAP+QG+AADI + AMI + + ++ H    KM++Q+HDELVFEV
Sbjct: 852 KSSNAMRRKAAERVAINAPMQGTAADIIKIAMIGIDRIIQ-HSDEIKMIMQVHDELVFEV 910

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E+++   S +I   MEKA    I L VPL   + + +NW E
Sbjct: 911 REDKVEHYSALIKAEMEKA----IQLSVPLIAEVGIGDNWDE 948


>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
 gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
          Length = 937

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 361/992 (36%), Positives = 546/992 (55%), Gaps = 75/992 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A        DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNKPTLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGAMYGVLNMLRRL----RADYVHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P
Sbjct: 113 ADDVIGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIK-GKVGENLRAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R A  +    
Sbjct: 232 LPRLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E        ERL
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAEMPS-----ERL 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 PEKAVAPEKLD-YQAVTTEAQFAAVLDKLSQADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  SQ +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSQTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +PP   ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I++  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHK------LATKMLLQIHDELVFEVPEEEITTASQ 942
           NAP+QG+A+D+ +RAMI V + L + +      L +K+++Q+HDELV EVPE E+    +
Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASLWDCLKSKLIMQVHDELVLEVPEAELDLVKE 905

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   M K     +N  VPL   +    NW+E
Sbjct: 906 KLPQIMAKVDEGMLN--VPLVAEVGAGMNWEE 935


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 359/987 (36%), Positives = 547/987 (55%), Gaps = 68/987 (6%)

Query: 2   QKENH-LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           QK+ H LFL+D  + IYRA +A    P ++ K  GL    + GF N L ++L        
Sbjct: 3   QKQAHKLFLLDAMALIYRAHFAFSKNPRINSK--GLNTGVMLGFTNTLLEVLDKEN---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD  A TFR+  Y  YKANR + PE +   +P V+   +AF IP +E+ GFEA
Sbjct: 57  PTHIGVAFDTHAPTFRHIQYEPYKANRQEQPEDIGVAIPWVKEIVKAFNIPILEMDGFEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173
           DDII T    AE E F V +++ DKD  QLV     LY         E +  + + +KW 
Sbjct: 117 DDIIGTLAKQAEAENFTVYMMTPDKDYGQLVDDHIFLYKPAFMGKGIEVMGPKQICEKWD 176

Query: 174 IPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           I   ++++ +  L GDS+DNIPGIPGIG KTA  LL++YG++E ++ N   +K  K++EN
Sbjct: 177 IERVDQVIDMLGLMGDSVDNIPGIPGIGQKTAVKLLKQYGSVEELIKNTDDLK-GKQKEN 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++ +AE   LS++L  ++ DVP+    E L  +  N   L +    LEF  L +R+    
Sbjct: 236 VINFAEQGILSKQLATIKIDVPVNFVEEELKYDGFNEETLKTIFAELEFRTLASRIFKDG 295

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
               A I+          N  + +  +    T+  T +F     +   +N+   P+    
Sbjct: 296 KTKKAAIKG---------NDQLGLFGDSKATTSTPTIEF-----EEETVNAAPIPEH--- 338

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                          Y KI   + I++ V  L       F   T +++A  ++ + I+ +
Sbjct: 339 ------KNILTTAHQYHKIAGPEAIEELVSYLMLQDQLCFDTETTSVNAMEAELVGISFA 392

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            L          E  +I      ++        T +IL  LK  F+NE  LKIG NIKYD
Sbjct: 393 YLSG--------EAYYIPCPADRAE--------TDQILEQLKPVFQNEKILKIGQNIKYD 436

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSS 527
            L+L  Y + ++G   D ML  Y+++     H +  +A+++L+Y    I     K  K+ 
Sbjct: 437 LLILKNYDVEVKGKLYDTMLAHYLIEP-EGKHSMDWLAEQYLNYQPVSITELIGKKGKNQ 495

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
             +  +   QV E+A E++++ LQL   L P L    L  ++  ++ P+I+V+++ME  G
Sbjct: 496 GNMRDVDVDQVTEYASEDADITLQLKEKLDPFLKENLLEKLFYEVENPLINVLTEMEFEG 555

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646
           I+ID   L ++S  + K    +E  +Y+++G +FNL+SPKQLGD+LF KLK  P   KTK
Sbjct: 556 IRIDTKSLAEMSISLEKESKEIENKVYEIAGVRFNLASPKQLGDVLFEKLKLDPKAKKTK 615

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ+ T  + L ++   ++ I + IL++RQ+ K+KSTY D+LP  IN +T ++HT Y+  
Sbjct: 616 TGQYATGEEILSKL-ANEHEIARAILDFRQMVKLKSTYVDALPTMINSKTGKIHTTYNQF 674

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKIT 765
              TGRL+S+ PNLQNIPI+T+ G++IR+AF+       L++ADYSQIELRI+A  +   
Sbjct: 675 VAATGRLSSINPNLQNIPIRTERGREIRKAFVPRDENHILLAADYSQIELRIMAAFSGDE 734

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            + + F+N  DIH   AA+IF V +E+V+  MRR AKT NF IIYGIS F L+ +L I R
Sbjct: 735 SMIEAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANFGIIYGISAFGLSQRLSISR 794

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +EA + I  YF  FP + EY+++     R + YVET+ GRR +  +INS  +++R   ER
Sbjct: 795 TEAKEIIDAYFKEFPAVKEYMDRAIEKARNDEYVETLLGRRRYLRDINSRNATMRGFAER 854

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAPIQGSAAD+ + AMI VH  ++   L +KM+LQ+HDELVF+  ++E+    + I 
Sbjct: 855 NAINAPIQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDELVFDAHKDEVEILKKNIP 914

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             M  A    I + VP++V +   ++W
Sbjct: 915 ELMSNA----IKMDVPVEVEVGTGDDW 937


>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
          Length = 917

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 366/984 (37%), Positives = 536/984 (54%), Gaps = 96/984 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLVS    L +T+  E +D + V+ K+G+PPE++V   AL 
Sbjct: 127 EAERRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRKL 245

Query: 247 VMLRTDVPITIPLEHL---ILEDCNGPRLISFLKA-LEFTKLINRV----ATTYDCDAAN 298
           V + T   +   LE +   +  D     L+  + A   F   +  V    A     DA +
Sbjct: 246 VTVETACDLAPHLESIDASLKSDGEARDLLRDIFARYGFKTWLREVDSAPAEGGGADAPD 305

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            EP  +         IA++T  + +T     QF +                         
Sbjct: 306 GEPAPV---------IAVDTPREYETIQTWEQFDA------------------------- 331

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W  KLE     +F   T  +D   ++ + +         
Sbjct: 332 ---------------------WFAKLEAAELTAFDTETTALDPMVARLVGL--------- 361

Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             SF VE     ++ ++ H   D   +  L  ++L+ LK + E+    K+G ++KYD  V
Sbjct: 362 --SFAVEPGKAAYLPVA-HRGPDMPEQLPL-DDVLARLKPWLESPDRKKVGQHLKYDAQV 417

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L  YGI + G E D +L SYVL+S R +HD+ S+A + L       +++       I  D
Sbjct: 418 LANYGIELNGIEHDTLLESYVLESHR-THDMDSLALRHLGVKTIKYEDVAGKGAKQIGFD 476

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQI 590
           +++ +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME  G+ I
Sbjct: 477 EVALAQAAEYAAEDADITLQLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLI 536

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L+  S EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G  
Sbjct: 537 DDARLQAQSNEIATRLVDLEAQAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAP 596

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +T
Sbjct: 597 STDEEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVT 655

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + 
Sbjct: 656 GRLASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRA 715

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  
Sbjct: 716 FSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKL 775

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINA
Sbjct: 776 YIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 835

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AAD+ + +MI+V   L   KLA++M++Q+HDELV EVP++E++   + +   M  
Sbjct: 836 PMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCG 895

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                  L+VPL   +    NW+E
Sbjct: 896 VA----KLKVPLVAEVGAGANWEE 915


>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
 gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
          Length = 920

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 366/984 (37%), Positives = 536/984 (54%), Gaps = 96/984 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 15  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 69

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 70  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 129

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLVS    L +T+  E +D + V+ K+G+PPE++V   AL 
Sbjct: 130 EAERRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALI 189

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L RKL
Sbjct: 190 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRKL 248

Query: 247 VMLRTDVPITIPLEHL---ILEDCNGPRLISFLKA-LEFTKLINRV----ATTYDCDAAN 298
           V + T   +   LE +   +  D     L+  + A   F   +  V    A     DA +
Sbjct: 249 VTVETACDLAPHLESIDASLKSDGEARDLLRDIFARYGFKTWLREVDSAPAEGGGADAPD 308

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            EP  +         IA++T  + +T     QF +                         
Sbjct: 309 GEPAPV---------IAVDTPREYETIQTWEQFDA------------------------- 334

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W  KLE     +F   T  +D   ++ + +         
Sbjct: 335 ---------------------WFAKLEAAELTAFDTETTALDPMVARLVGL--------- 364

Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             SF VE     ++ ++ H   D   +  L  ++L+ LK + E+    K+G ++KYD  V
Sbjct: 365 --SFAVEPGKAAYLPVA-HRGPDMPEQLPL-DDVLARLKPWLESPDRKKVGQHLKYDAQV 420

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L  YGI + G E D +L SYVL+S R +HD+ S+A + L       +++       I  D
Sbjct: 421 LANYGIELNGIEHDTLLESYVLESHR-THDMDSLALRHLGVKTIKYEDVAGKGAKQIGFD 479

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQI 590
           +++ +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME  G+ I
Sbjct: 480 EVALAQAAEYAAEDADITLQLHCALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLI 539

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L+  S EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G  
Sbjct: 540 DDARLQAQSNEIAMRLVDLEAQAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAP 599

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +T
Sbjct: 600 STDEEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVT 658

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + 
Sbjct: 659 GRLASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRA 718

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  
Sbjct: 719 FSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKL 778

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINA
Sbjct: 779 YIDRYFARYPGVAQYMEDTRASAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 838

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AAD+ + +MI+V   L   KLA++M++Q+HDELV EVP++E++   + +   M  
Sbjct: 839 PMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCG 898

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                  L+VPL   +    NW+E
Sbjct: 899 VA----KLKVPLVAEVGAGANWEE 918


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 345/967 (35%), Positives = 531/967 (54%), Gaps = 81/967 (8%)

Query: 16  IYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           ++RAF+A P L+    G P  A+ G  NM+  L++   +    S   V+FD    TFRNE
Sbjct: 1   MFRAFHALPPLTNSK-GAPTGAVKGVINMIRSLMKGFPE----SRVIVVFDAKGPTFRNE 55

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
           IY +YKANRP +P+ L  Q+  +    +A G+P + + G EADD+I T    A   G   
Sbjct: 56  IYAEYKANRPPMPDDLRVQIEPIHEIIRAMGLPLLIVDGVEADDVIGTLAKQATDSGQDA 115

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            + + DKD+ QLVSP   L +T+    +D + VI+K+GIPPE+++   AL GD +DNIPG
Sbjct: 116 LVSTGDKDMAQLVSPHVTLMNTMTNTTMDRDGVIEKFGIPPERIIDYLALVGDKVDNIPG 175

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           +   G KTA   L+ Y +++ ++ +A  IK  K  E + E   T  +S  L  +R ++ +
Sbjct: 176 VHKCGPKTALKWLEAYDSMQGVIDHAEEIK-GKIGEYLREAVPTLPMSYDLATIRCELEL 234

Query: 256 TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIA 315
              L  +   + +  RL++  K  EF   I  +                 ++  E +G +
Sbjct: 235 PQSLAEIQPVEADRERLLALFKDCEFKTWIRELEAGQGA-----------VDVAE-QGAS 282

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
           +E   D                 S + S+  P                    Y  ++   
Sbjct: 283 VEPVTD----------------ASAVKSDALPP------------------DYEVVLKQD 308

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE---TIFIDLS 432
            + +W+ +L      SF   T +++   ++ + +           SF VE     ++ L 
Sbjct: 309 QLDRWLVRLAQFELFSFDTETTSLNYMQAEIVGV-----------SFAVEYNKAAYVPLG 357

Query: 433 VHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDI 489
                D  G    L ++ +L+ LK   E+    K+G ++KYDK VL RYGI ++G   D 
Sbjct: 358 ----HDYPGAPEQLDRDAVLNALKPLLEDTGKAKVGQHLKYDKNVLARYGIELKGIAHDT 413

Query: 490 MLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ML SYVL+S    HD+ S+A+++L   +   ++I       +  ++I   Q   +A E++
Sbjct: 414 MLASYVLNSVAGRHDMDSLAERYLDRHTVHYEDIAGKGAKQLTFNQIDLEQAAPYAAEDA 473

Query: 547 NVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           ++ LQL   L PKL  E  L  VY+ L+ P++DV++++E  G+++D D L   S E+++ 
Sbjct: 474 DITLQLHRELWPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEG 533

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           +   EE  ++ +GE FNL SPKQL  ILF K   P   KT  GQ  T    LE++    +
Sbjct: 534 MRQAEEAAHNEAGESFNLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGH 593

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P+ + IL +R LSK+KSTY D LP  I+ +T RVHT Y  A   TGRL+S +PNLQNIPI
Sbjct: 594 PLPQWILRYRALSKLKSTYTDKLPQLIDSKTGRVHTSYHQAVAATGRLSSSDPNLQNIPI 653

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +++ G++IR AF++ P  K+++ADYSQIELRI+AH++    L + F+   DIH+  A+E+
Sbjct: 654 RSEEGRRIREAFVAEPGHKILAADYSQIELRIMAHLSGDETLIRAFKEGRDIHQATASEV 713

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FGV +++V  + RR AK +NF +IYG+S F LA QL I R EA  Y+  YF R+PG+ +Y
Sbjct: 714 FGVPLDEVESEQRRRAKAVNFGLIYGMSAFGLAKQLGISRGEAQGYVDTYFERYPGVRDY 773

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +E+T+   R+ GYVET FGRR++  EI S     R   ER AINAP+QG+AADI +RAMI
Sbjct: 774 MERTREQAREQGYVETEFGRRLYLPEIQSRNVPRRQHAERTAINAPMQGTAADIIKRAMI 833

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           ++H +LE      +M++Q+HDELVFEVPE++      ++   M +A     +LRV L V 
Sbjct: 834 AIHDALEKELPDVRMVMQVHDELVFEVPEDQAKQTQALVETKMVEAA----DLRVALDVE 889

Query: 966 IKVSNNW 972
             ++++W
Sbjct: 890 SDIADSW 896


>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
 gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
          Length = 923

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 354/973 (36%), Positives = 543/973 (55%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  EG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG LENI+ NA ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLENIIANADQLK-GKISQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + +++  +  V  +
Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSTYKQQVSQV 297

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +        E+     I+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 298 VVQD--------EVKPADAIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLLQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   ++T+      +  E +G   F I  D  DA++  P+A       Q+ D       
Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAQDAYYV-PLAHNYENAPQQLDR------ 397

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                               ++IL+ +K   ENE   KIGH++KYD  +   +GI ++G 
Sbjct: 398 --------------------EQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +A
Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497

Query: 543 IENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S E
Sbjct: 498 AEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +K +  LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I 
Sbjct: 558 FAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNLQ
Sbjct: 617 --EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR  
Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+PG
Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYPG 794

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI +
Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V K L   K   K+LLQ+HDELVFE  +      S+ I   ME      + + VP
Sbjct: 855 IAMIEVDKILP--KDQAKLLLQVHDELVFEADQNIAEELSKQIAKVMESV----VEISVP 908

Query: 962 LKVNIKVSNNWQE 974
           L V +    NW +
Sbjct: 909 LVVEVGQGKNWDD 921


>gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 921

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 350/989 (35%), Positives = 534/989 (53%), Gaps = 96/989 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+FD
Sbjct: 6   LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y  LE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +    D   A 
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E + ++  T E K  A E        ++ SQF +                         
Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W++KL      +F I ++  DA  ++ + ++ + +   +
Sbjct: 326 ---------------------WLKKLNAAPLFAFVIQSNGTDAQRAQLVGLSFA-IQTHE 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q  ++A E +++ L+L  +   +L  +  L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M  A      L VPL V + V NNW E
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 956

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 363/989 (36%), Positives = 547/989 (55%), Gaps = 85/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGS +++R F+  P LS    GLP NAI G  N L KL+    K+   +H AV FD
Sbjct: 30  VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 84

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII T  Y
Sbjct: 85  TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 144

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++     L 
Sbjct: 145 QACQQGHRVIISTGDKDMAQLVNDCVILEDSFTGKLTDNAGVIEKFGVTSEQIADYLTLM 204

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTAA LL EY N++ IL N + IK    + +I +  ++  L+R L
Sbjct: 205 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 263

Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + T++ + I  + + L+          P L +  + LEF K + + A   +       
Sbjct: 264 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 318

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +   +K ++I+     D T+                S QTP             
Sbjct: 319 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 341

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418
            PI + SY  I   +D  + + KL    +  F I T+T D    H+K + I++ST D   
Sbjct: 342 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 396

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 E  +I +      D    N L    +LS  K   EN +  KIG ++KYD  +  
Sbjct: 397 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 451

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           +YGI++  ++ D ML SYV+++  + H + ++A+ +L   + T +++       +  DK+
Sbjct: 452 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 511

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI ID 
Sbjct: 512 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 571

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ+ T
Sbjct: 572 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 631

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   L +I   ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T TGR
Sbjct: 632 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 687

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L + F 
Sbjct: 688 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 747

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A DYI
Sbjct: 748 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 807

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAINAP+
Sbjct: 808 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 867

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA+I + AMI+V + L   K   K+LLQ+HDELVFEV  ++      +I  +M+ A 
Sbjct: 868 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 925

Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974
                     ++  VP  V I +  NW++
Sbjct: 926 TDTAKKLGWAVDFAVPFVVEIGIGENWEQ 954


>gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
 gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
          Length = 929

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 348/977 (35%), Positives = 527/977 (53%), Gaps = 62/977 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  AI G  NML +L    R +  A + A +FD
Sbjct: 4   LLLVDGSSYLYRAFHAMPDL-RSPQGEPTGAIYGVLNMLRRL----RADYPADYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP+YKA+RP +P+ L  Q+  +     A G   + + G EADD+I T T+
Sbjct: 59  AKGKTFRDDWYPEYKAHRPPMPDDLRAQIEPLHEVVAAAGWNILMVDGVEADDVIGTLTH 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    + + DKDL QLV+P   L +T+  E +D   V+ K+G+ P ++V   AL 
Sbjct: 119 QASSNGAHCIVSTGDKDLTQLVNPHVMLVNTMSNEVLDEAGVLAKFGVEPARIVDYLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG L+N+L +A  +      EN+    +     R+L
Sbjct: 179 GDTVDNVPGVAKCGPKTAVKWLTQYGTLDNLLAHADEVG-GAVGENLRAARDWLPQGRRL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V ++ DV +    + L     +  ++ +  +   F   +  V  +Y   A+         
Sbjct: 238 VTVKCDVALDRKFDELSAPAADIEKMKALFERFGFKSWLREV--SYPSPASG-------- 287

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                +G   E    R     +S   +LS         Q  Q         L     +  
Sbjct: 288 -----RGAGGE---GRSGDASSSLTPTLSQGARGQEQRQFEQP-------ALPSTTNDTS 332

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I+    +  W+ KL      S    T  +D   ++ + I           SF +E 
Sbjct: 333 NYQTILTDAQLDAWLHKLMAAPLVSLDTETTGLDGMTAQLVGI-----------SFSIEA 381

Query: 427 ---IFIDLSVH--TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
               ++ L+ H   + D  G+    +  L  LK + E+    K+G N+KYD+ +   +GI
Sbjct: 382 HQAAYLPLAHHYPGAPDQLGR----EHALQKLKHWLESPAHKKLGQNLKYDQHIFANHGI 437

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
           +  G  ED +L SYVL+S    H++ ++A + L  +     +++      I  D++    
Sbjct: 438 AFAGIAEDTLLQSYVLES-HKPHEMGNLALRHLGLSTVSYADVVGKGAKQIGFDQVDLET 496

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E++++ LQL   L P+L   +L  VY +++ P+ +V+ +ME  G+ ID  +L +
Sbjct: 497 ATRYAAEDADITLQLHQTLSPQL-QGRLDAVYRQIELPVREVLFKMERNGVLIDSAMLGR 555

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+   L  +E+  ++ +G+ FNL+SPKQL +ILF KL+ P   KT +G   T  + L
Sbjct: 556 QSHELGLKLNEIEKQAFEAAGQPFNLNSPKQLSEILFDKLQLPVKKKTPSGTPSTDEEVL 615

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           +++   D P+ K +LE+R ++K+KSTY D LP  +N +T RVHT Y+ A  +TGRLAS +
Sbjct: 616 QELAL-DYPLPKLLLEYRGMAKLKSTYTDKLPQMVNAKTGRVHTSYAQAVAVTGRLASSD 674

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T  G++IR AFI+P   +++SADYSQIELRI+AH++    L + F    DI
Sbjct: 675 PNLQNIPIRTPEGRRIREAFITPAGSRIVSADYSQIELRIMAHLSGDEGLLKAFAAGEDI 734

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+F V ++ VS + RR+AK INF +IYG+S + LA QL I  S A  YI  YF 
Sbjct: 735 HRATAAEVFSVALDAVSSEQRRYAKVINFGLIYGMSAYGLAAQLNIETSAAKQYIDLYFA 794

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+  Y++ T+   +  G+VET FGRR+   EIN      R   ERAAINAP+QG+AA
Sbjct: 795 RYPGVKRYMDSTREQAKAQGFVETWFGRRLWLPEINGANGMRRQAAERAAINAPMQGTAA 854

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + AMI+V   LE  KLATK+++Q+HDELV EVP+ E+      +   M         
Sbjct: 855 DLIKLAMIAVQDWLETEKLATKLIMQVHDELVLEVPQGELARVKDKVRELMCNVA----E 910

Query: 958 LRVPLKVNIKVSNNWQE 974
           L+VPL+V +    NW E
Sbjct: 911 LKVPLEVGMGEGGNWDE 927


>gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia
           stuttgartiensis]
          Length = 887

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 357/983 (36%), Positives = 546/983 (55%), Gaps = 116/983 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            F++DG S  Y+AFYA        DG P NA+ GF  ML KLL+  R +    + A++FD
Sbjct: 5   FFIIDGHSHCYQAFYAITAKLTTPDGTPANAVYGFTRMLLKLLREQRPD----YLALVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T R++ Y DYKA R + PE L  Q+PL+    +AFGIP    +G+EADD+I +   
Sbjct: 61  TKYTTNRHQKYSDYKATRKETPEDLQVQIPLIYKVVRAFGIPVYAAKGYEADDVIGSLVT 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           + EK+   V I+++DKDL QL+ P   +    K E ID + +  + GI P ++V + AL 
Sbjct: 121 VLEKKEIEVVIVTSDKDLEQLIGPKVKILHAKKGEIIDSDVLFTQKGIMPNQVVDVLALA 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD  DNIPG+PGIG KTA  L++++G+LE++L N   I  KKR+EN+  +A+ AR SR  
Sbjct: 181 GDVSDNIPGVPGIGNKTALDLIKKWGSLESVLANVGHISGKKRQENLRTFADQARFSR-- 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
                                            E   L N +  T D ++  +       
Sbjct: 239 ---------------------------------ELLDLYNDIPLTVDMESCRL------- 258

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSL-SDQTSKINSEQTPQKL---------FLERLQ 356
           +T EN        I      ++  F++L SD  +  N+E T   L         FLE++ 
Sbjct: 259 STGEN--------IKLRKLFRSFGFNTLLSDMVATANTEATHYYLINTIEQFHGFLEQIS 310

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           K   + I+                   LET G+          D   +  + ++ S  +Q
Sbjct: 311 KKDAFAID-------------------LETTGT----------DPLKAHIVGLSFS-WEQ 340

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K+  ++ V  +  + + H + D          +L  ++K  E+E   KIG NIKYD LVL
Sbjct: 341 KE--AYYVPLMAPENTRHLTADI---------VLPEIRKVLEDESKKKIGQNIKYDLLVL 389

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            ++ I ++G + D M+ SY+L+  + +H++  IA ++LSY      E++ S K  I +DK
Sbjct: 390 KKHNIGLKGIYFDSMIASYLLNPAKRNHNLDDIAFEYLSYKTIMIAELIGSGKQQITMDK 449

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   +V ++A +++++  +L   + P L  E L  +++ ++ P+I V+++ME  GI I+ 
Sbjct: 450 VPVDKVCQYACQDADITFRLAETMAPLLKKEGLWQLFQEIEIPLIYVLAEMEGNGICINA 509

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L+Q+S +++  L  LE+ IY ++ ++FN+SS KQLG ILF K + P   +TKTG   T
Sbjct: 510 DFLRQMSGDLAAQLQCLEKEIYRVAEQEFNISSHKQLGAILFDKFQLPKLRRTKTG-VST 568

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  L  +    +P+ K  LE+RQL+K+KSTYAD+LPN +N+ T ++HT ++   T TGR
Sbjct: 569 DANVLASL-AWRHPLPKLALEYRQLAKLKSTYADALPNLLNQDTGKIHTTFNQTVTSTGR 627

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIP+KTD+G++IRRAFI S      +SADYSQIELRILAH ++ T L + F
Sbjct: 628 LSSSNPNLQNIPVKTDIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDTALMEAF 687

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              LDIH  VA+ I+ V +E V+ +MRR+AK INF IIYG++ + L+    +  ++A D+
Sbjct: 688 REDLDIHAAVASSIYHVPLENVTTEMRRNAKAINFGIIYGLNEYGLSRDTGLSLNDAKDF 747

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  + G+ E+ +K     ++ GYV+T+F R+    +IN+     RN+ ER AIN  
Sbjct: 748 IDAYFTLYQGVREFRDKVVEEAKEMGYVKTLFNRKRAIPDINAKNKRFRNLAERIAINTI 807

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AM +++  L+      +MLLQIHDEL+FEV  + +     ++   M  A
Sbjct: 808 IQGSAADLIKVAMNNIYSKLKCGDYEARMLLQIHDELLFEVGVQALEQTRIMVQEEMGHA 867

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + LRVP+KVNIK   NW E
Sbjct: 868 ----VTLRVPVKVNIKTGKNWME 886


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
          Length = 952

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 371/996 (37%), Positives = 549/996 (55%), Gaps = 76/996 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ +  G P  A+ G  NML  L+         SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAFHAFPPLTNRL-GEPTGAMYGVLNMLKSLISQVN----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFR+E++  YK++RP +P+ L PQ+ PL R+  +A GIP I I+G EADD+I 
Sbjct: 61  VFDAKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRI-IKALGIPLISIEGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A K+G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++  
Sbjct: 120 TLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR--ENILEYAET- 239
            AL GDS DNIPG+ G+G KTA  LLQ  G+LE I  N  +I     R  +N     E  
Sbjct: 180 LALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATLSFRGAKNFAPKLEAE 239

Query: 240 ---ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A LS  L  ++TDV + +  + L+ +  +   L    +  EF + +N V        
Sbjct: 240 KANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELAQLFEHYEFKRWLNEVNQ------ 293

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N  PV                     T     +  +    T  + +E+    +      
Sbjct: 294 -NANPV---------------------TQTSAEKVPNNYQVTQAVRNEENVANVV----- 326

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS---- 412
                 I+   Y  +   + +  W++KL      +    TD++DA  +  + I+ +    
Sbjct: 327 -----EIDRSKYETVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENG 381

Query: 413 -----TLDQKDDTSFKVETIFID--LSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLK 464
                 L  K     +   +F D   S   S D   KN L     LS LK    N    K
Sbjct: 382 EACYIPLGHKQKAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKK 441

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KE 519
           IG NIKYD  +   YGI ++G   D M+ SY  +S GR  H++  +A ++L +     +E
Sbjct: 442 IGQNIKYDLTIFANYGIELQGVAFDTMIESYTQNSTGR--HNMDDLAARYLGHKTIPFEE 499

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMID 578
           +    K+ +  DKI  ++  E+A E+++V ++L  +L  KL  E +L+ +++ ++ P++ 
Sbjct: 500 LAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVG 559

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID   L   SAEI K L  +E  ++  +G+ FNL+S KQL +ILF KL 
Sbjct: 560 VLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLG 619

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  INK+T R
Sbjct: 620 LPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGR 679

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y+ A T TGRL+S +PNLQNIPI+ + G++IR+AF++    K+++ADYSQIELRI+
Sbjct: 680 VHTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIM 739

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    +   F    DIHR  AAEIFGV + +V+ + RR AK INF +IYG+S F L+
Sbjct: 740 AHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLS 799

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R+EA  Y+  YF R+P + +++   +    + GYVET+FGRR++  +I S  + 
Sbjct: 800 NQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAI 859

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R   ER AINAP+QG+AADI + AMI +  ++ D+    KM++Q+HDELVFEV  ++I 
Sbjct: 860 LRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EIKMIMQVHDELVFEVKADKID 918

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             SQ+I   MEKA    I+L+VPL   + V  NW E
Sbjct: 919 HYSQLIKTEMEKA----ISLKVPLIAEVGVGENWDE 950


>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
 gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
          Length = 932

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 354/980 (36%), Positives = 534/980 (54%), Gaps = 69/980 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L R  DG P  A+ G  NML +L     +E  A + A IFD
Sbjct: 4   LLLIDGSSYLYRAFHAMPDL-RSPDGAPTGAVYGMINMLRRL----EREVAADYSACIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YP YKA+RP +P+ L  Q+  V  A +A G P + + G EADD+I T   
Sbjct: 59  AKGKTFRDDLYPAYKAHRPPMPDDLRQQIAPVHAAVRALGWPLLMVDGVEADDVIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   GF V I + DKD+ QLV+P   L +T+ EE +D   V  K+G+PP +++    LT
Sbjct: 119 NAAAAGFQVVISTGDKDMAQLVTPQVKLVNTMTEEWLDEAGVAGKFGVPPARIIDYLTLT 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD +DN+PG+   G KTA   L+ YG+L+ ++  A+ +  K   EN+        LSR+L
Sbjct: 179 GDKVDNVPGVDKCGPKTAVKWLENYGDLDTLMAQANEVGGKVG-ENLRTALAWLPLSRRL 237

Query: 247 VMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           V ++TDV +   L    ++L+    + P + +  + L F   +      Y    A  EPV
Sbjct: 238 VTIKTDVDLATELPQGFDNLLRPAVDRPAMSALCRELGFRTWLKE----YGDGTALTEPV 293

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                              R   +    F++        ++        +         P
Sbjct: 294 A----------------PARPEAVADDLFAAAPVAADMPSAPAAASPALVT--------P 329

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  ++    +  W+ +L     A+F   TD++D   ++ + +           SF
Sbjct: 330 TAEARYQTVLTEAALADWLARLAAAPRAAFDTETDSLDPMQARIVGV-----------SF 378

Query: 423 KV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            V   E  ++ L+ H +     +  L ++ +L+ LK + EN    K+  N  YD+ VL  
Sbjct: 379 AVTPGEAAYVPLA-HVAPGV--EPQLDRDRVLAQLKPWLENPAAAKVLQNANYDRHVLAN 435

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           +GI + G  +D MLM YVL S    H++ ++A++ L       ++I       I   ++ 
Sbjct: 436 HGIRLAGVADDTMLMDYVLAS-HERHNMDAMAERELGLATIKYEDICGKGARQIGFAEVD 494

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                 +A E+++V L+L  +L  KL   +   +Y  ++ P   V+  ME TG+ ID+  
Sbjct: 495 LDTATRYAAEDADVTLRLRDVLAGKLDGARDT-LYSSIELPTAAVLFAMERTGVLIDRAE 553

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKT 652
           L + S  + + +L++E  +Y+L+G+ FNL+SPKQL DILF KL   +    KT +G + T
Sbjct: 554 LARQSQVLGEEMLAIETEVYELAGQPFNLNSPKQLSDILFNKLAIDTKGVKKTASGGYST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
               LE++   D P+ K +L +R L+K+KSTY D LP  IN  T RVHT YS AS +TGR
Sbjct: 614 DESVLEKL-AEDYPLPKALLRYRGLAKLKSTYTDKLPAMINPDTGRVHTHYSQASVVTGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIPI+TD G+++R AF++P    ++SADYSQIELRI+AH++    L   F 
Sbjct: 673 LASSDPNLQNIPIRTDEGRRVREAFVAPAGSCIVSADYSQIELRIMAHLSGDAGLIAAFR 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FGV +E VS + RR+AKTINF +IYG+S F LA  L I    A  +I
Sbjct: 733 EGRDIHRATASEVFGVPLEAVSAEQRRYAKTINFGLIYGMSAFGLAKSLEIDNKAAQTFI 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RYF R+PG+ +Y+++T+   R+ G+VET+FGRR++  EI S  ++ R   ERAAINAP+
Sbjct: 793 ERYFARYPGVQDYMQRTREAAREQGWVETVFGRRLYLPEIRSSNAARRAGAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ + AMI V   L+  +LA+++++Q+HDELV EVPE E       +   M    
Sbjct: 853 QGTAADLIKLAMIRVADWLQREQLASRLIMQVHDELVLEVPEAERERVCAALPQEMAAVA 912

Query: 953 LPKINLRVPLKVNIKVSNNW 972
                L VPL   +    NW
Sbjct: 913 ----GLAVPLVAEVGSGANW 928


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 952

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 371/996 (37%), Positives = 549/996 (55%), Gaps = 76/996 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ +  G P  A+ G  NML  L+         SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAFHAFPPLTNRL-GEPTGAMYGVLNMLKSLISQVN----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFR+E++  YK++RP +P+ L PQ+ PL R+  +A GIP I I+G EADD+I 
Sbjct: 61  VFDTKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRI-IKALGIPLISIEGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A K+G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++  
Sbjct: 120 TLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR--ENILEYAET- 239
            AL GDS DNIPG+ G+G KTA  LLQ  G+LE I  N  +I     R  +N     E  
Sbjct: 180 LALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATLSFRGAKNFAPKLEAE 239

Query: 240 ---ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A LS  L  ++TDV + +  + L+ +  +   L    +  EF + +N V        
Sbjct: 240 KANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELAQLFEHYEFKRWLNEVNQ------ 293

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N  PV                     T     +  +    T  + +E+    +      
Sbjct: 294 -NANPV---------------------TQTSAEKVPNNYQVTQAVRNEENVANVV----- 326

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS---- 412
                 I+   Y  +   + +  W++KL      +    TD++DA  +  + I+ +    
Sbjct: 327 -----EIDRSKYETVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENG 381

Query: 413 -----TLDQKDDTSFKVETIFID--LSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLK 464
                 L  K     +   +F D   S   S D   KN L     LS LK    N    K
Sbjct: 382 EACYIPLGHKQKAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKK 441

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KE 519
           IG NIKYD  +   YGI ++G   D M+ SY  +S GR  H++  +A ++L +     +E
Sbjct: 442 IGQNIKYDLTIFANYGIELQGVAFDTMIESYTQNSTGR--HNMDDLAARYLGHKTIPFEE 499

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMID 578
           +    K+ +  DKI  ++  E+A E+++V ++L  +L  KL  E +L+ +++ ++ P++ 
Sbjct: 500 LAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVG 559

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID   L   SAEI K L  +E  ++  +G+ FNL+S KQL +ILF KL 
Sbjct: 560 VLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLG 619

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  INK+T R
Sbjct: 620 LPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGR 679

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y+ A T TGRL+S +PNLQNIPI+ + G++IR+AF++    K+++ADYSQIELRI+
Sbjct: 680 VHTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIM 739

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    +   F    DIHR  AAEIFGV + +V+ + RR AK INF +IYG+S F L+
Sbjct: 740 AHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLS 799

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R+EA  Y+  YF R+P + +++   +    + GYVET+FGRR++  +I S  + 
Sbjct: 800 NQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAI 859

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R   ER AINAP+QG+AADI + AMI +  ++ D+    KM++Q+HDELVFEV  ++I 
Sbjct: 860 LRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EIKMIMQVHDELVFEVKADKID 918

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             SQ+I   MEKA    I+L+VPL   + V  NW E
Sbjct: 919 HYSQLIKTEMEKA----ISLKVPLIAEVGVGENWDE 950


>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
 gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
          Length = 915

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 357/982 (36%), Positives = 537/982 (54%), Gaps = 80/982 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +K+    LVDGSS+++RA++  P L R     G+   A+ G  NML  L+    KE    
Sbjct: 3   EKKAPFILVDGSSYLFRAYH-VPQLQRMTNSSGMMTGAVFGVINMLKSLI----KEYEPE 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             A++FD    TFRN++YP+YKANRP +PE L  Q+  +    +A G+P + I G EADD
Sbjct: 58  QMAMVFDAKGKTFRNDLYPEYKANRPPMPEDLRQQIEPIHEIVKAMGLPLLVIDGVEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPE 177
           +I T    A KEG    I + DKD+ QLVS    L +T+ +     D + VI+K+G+ PE
Sbjct: 118 VIGTLAKQACKEGRETLISTGDKDMAQLVSDHVTLINTMDKTNPITDRDRVIEKFGVKPE 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++   AL GD +DNIPG+   G KTA   L++YG+L+ ++ +A  I   K  EN+ E  
Sbjct: 178 QIIDYLALVGDKVDNIPGVDKCGPKTAVKWLEQYGSLQGVIDHADEIG-GKIGENLREAI 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +   LS +L  ++ D  +    E L +   +   L      +EF + +  V         
Sbjct: 237 DRLPLSYELATIKLDCDLEFKPEQLNIGQPDLKELKKLYSDMEFRRWLTEVLKEL----- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         +G A ++  D                    +SE  P    ++R   
Sbjct: 292 -------------GEGEAGDSAGD--------------------DSEDGPSVALVDR--- 315

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+  K++ +W++KLE +   +F   T +++   ++ + ++ + LD  
Sbjct: 316 --------SKYETILEQKELDKWIKKLEEVELFAFDTETTSLNYIEAELVGMSFA-LDNG 366

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++       +D         E+L  LK   E+E   K+G N+KYD  VL 
Sbjct: 367 EAAYLPVAHSYMGAPEQLERD---------EVLKQLKPLLESEKHKKVGQNLKYDMSVLA 417

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            Y I + G E D ML SY L+S  S HD+ ++A   L++     +EI    K+ +  D+I
Sbjct: 418 NYDIELAGIEFDTMLESYCLNSVASRHDMDTLALHHLNHVNIKFEEIAGKGKNQLTFDQI 477

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ ++L   L P+L   E    +++ ++ P++ ++S++E  G+ +D 
Sbjct: 478 EVEQAAPYASEDADITMRLHQKLWPELKQNEGPTQIFQHIEMPLLRILSKVERNGVLVDG 537

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL + S    K L  LE+  Y+++G++FNL SPKQL  I + +L  P   KT  GQ  T
Sbjct: 538 KLLLEKSHLFEKRLKELEKEAYEIAGKEFNLGSPKQLQVIFYEELGLPILKKTPKGQPST 597

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE R LSK+KSTY D LP  I+ +T RVHT Y  A   TGR
Sbjct: 598 AEEVLQELAL-DYPLPKLILEHRGLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIAATGR 656

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPIKT+ G+ IR AFI+P   K+++ADYSQIELRI+AH+++   L + FE
Sbjct: 657 LSSTEPNLQNIPIKTEEGRSIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEGLLKAFE 716

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             LD+H   AAE+F V +++V+   RR+AK INF +IYG+S F LA Q+   R+ A DYI
Sbjct: 717 EGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLIYGMSAFGLAKQIDTDRNTAQDYI 776

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E TK      GYVET++GRR++  EI+S     R   ER AINAP+
Sbjct: 777 NTYFARYPGVETYMESTKEKAADLGYVETLYGRRLYLPEIHSKNGMRRKAAERTAINAPM 836

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM+ V K L+D K   KM++Q+HDELVFEV E+++  A + I   M+   
Sbjct: 837 QGSAADIIKLAMLEVDKWLKDVK-GIKMIMQVHDELVFEVEEDKLELAQKEIPKLMQSVA 895

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL  ++ V +NW E
Sbjct: 896 ----ELSVPLIADVGVGDNWDE 913


>gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 351/990 (35%), Positives = 536/990 (54%), Gaps = 98/990 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+FD
Sbjct: 6   LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y  LE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +    D   A 
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E + ++  T E K  A E        ++ SQF +                         
Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W++KL      +F   ++  DA  ++ + ++ +T  Q  
Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAT--QTH 362

Query: 419 DTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL- 476
           + ++  +   ++ +     +D+         +L  LK   E+    K+G + K+   +L 
Sbjct: 363 EAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLA 413

Query: 477 -------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525
                     GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI     
Sbjct: 414 NCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGA 473

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQME 584
             +  D+I+  Q  ++A E +++ L+L  +   +L  +  L  V   ++ P++ V++ +E
Sbjct: 474 KQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIE 533

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +K
Sbjct: 534 RQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSK 593

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y 
Sbjct: 594 TATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 653

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+ 
Sbjct: 654 QAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQD 713

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + 
Sbjct: 714 EGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVD 773

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   E
Sbjct: 774 RKQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAE 833

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I
Sbjct: 834 RMAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQI 893

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M  A      L VPL V + V NNW E
Sbjct: 894 RPHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 366/989 (37%), Positives = 545/989 (55%), Gaps = 86/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           LFL+DG + IYRA +A     R    GL  +AI GF N L ++L   +KE+  SH AV+F
Sbjct: 3   LFLLDGMALIYRAHFALSKSPRFTSTGLNTSAIMGFTNTLLEVL---KKEN-PSHMAVVF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A T R+  +  YKA+R  +PE L   +P +    + F IP I + GFEADDII T  
Sbjct: 59  DTEAPTERHTSFEAYKAHREAMPEDLAAAIPYIFRLIEGFNIPVITMDGFEADDIIGTLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP-EKMV 180
             AE+ GF V  ++ DKD  QLVS    +Y   +     E + ++ V++KW I   E+++
Sbjct: 119 KKAEQAGFEVFCMTPDKDYAQLVSDHIKIYKPARMGNGHEILGVKEVLEKWEIERVEQVI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GD++DNIPGIPG+G KTA  L+Q++G++E I+ N+ ++K  K +ENI  YAE  
Sbjct: 179 DILGLWGDAVDNIPGIPGVGEKTAKKLIQDFGSVEGIIANSDQLK-GKLKENIETYAEQG 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S+KL  +  DVP+    E L++ + N   L      LEF  L  RV            
Sbjct: 238 LISKKLATIILDVPVEFEAETLMIREANKDLLEPLFAELEFRTLGKRVFGE--------- 288

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
               + N  +NK ++   ++D         FSS    T    +   P             
Sbjct: 289 ----EFNVVDNK-VSAGGQMDL--------FSSGESATPAPEATIPPA------------ 323

Query: 361 YPINN-----DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            P N+      SYT + + + + + +  L +  S  F   T   DA   + + ++ S   
Sbjct: 324 -PGNHIGNTEHSYTFVDSEEKLNELLALLASQKSFCFDTETTGTDANCCELVGLSFSV-- 380

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +K    +          V  S D    + L ++     K  FEN    KIG N+K+D LV
Sbjct: 381 EKGQAWY----------VPASADQKEAHALVQQ----FKPVFENPAIGKIGQNLKFDILV 426

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPI 530
           L  Y + + G   D ML  Y++D   + H +  +++ +L YT   I        K  + +
Sbjct: 427 LSWYDVKVAGELFDTMLAHYLIDP-ETRHGMDVLSENYLGYTPVSITTLIGPKGKGQLNM 485

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLI---VEKLLHVYERLDKPMIDVVSQMEITG 587
             +    V ++A E++++ LQL  +  P LI    +KL H    ++ P++ V+  ME  G
Sbjct: 486 RDVDPKTVSDYAAEDADITLQLKEIFEPMLIKVEADKLAH---EVEFPLVPVLVDMERVG 542

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646
           ++ID   L   S  I   +  LE  IY+ +G  FN++SPKQLG++LF KL+  P   KTK
Sbjct: 543 VRIDVKALSDFSLAIQNEVQILEARIYEKAGVPFNIASPKQLGEVLFDKLQLDPKAKKTK 602

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ++T  +D+       + I+++ILE+RQL K++STY D+LP  IN +T RVHT Y+ A
Sbjct: 603 TGQYQT-GEDVLMALANKSDIVQDILEYRQLQKLRSTYVDALPQLINTKTGRVHTSYNQA 661

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKIT 765
              TGRL+S  PNLQNIPI+T+ G+++R+AFI+   + +I SADYSQIELR++A I+K  
Sbjct: 662 VAATGRLSSNNPNLQNIPIRTERGREVRKAFIARDDEHVILSADYSQIELRLIAEISKDA 721

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            +   F   LDIH   AA+++GV +E+V+   RR+AK +NF IIYG S F L+  L IPR
Sbjct: 722 NMLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNAKAVNFGIIYGQSAFGLSQSLGIPR 781

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EAAD I++YF ++PGI +Y+  T  F +++GYVET+  RR +  +INS  +++R   ER
Sbjct: 782 REAADMIEQYFIQYPGIRDYMNNTIAFAKEHGYVETLLKRRRYLRDINSANATVRGFAER 841

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAPIQGSAAD+ + AMI +H+ ++   L  KM +Q+HDELVF+VP  E+    +II 
Sbjct: 842 NAINAPIQGSAADLIKIAMIHIHQDIQQANLKGKMTMQVHDELVFDVPRNEVAAFKEIIE 901

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M+ A    +   VP+ V I    NW E
Sbjct: 902 ARMKGA----LKTEVPIVVEIGEGQNWLE 926


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Riemerella anatipestifer RA-GD]
          Length = 935

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 357/984 (36%), Positives = 552/984 (56%), Gaps = 75/984 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+LVD  + I+R +YA    P L+    GL  +AI GF N L +L++  R     +H AV
Sbjct: 9   LYLVDAYAMIFRGYYAFIRNPRLTT--GGLDTSAIYGFTNSLIELIKKER----PTHLAV 62

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD      R+E + DYKANR + PE +   +P +    +A  IP + ++G+EADD+I T
Sbjct: 63  VFDVGRQNVRHEDFSDYKANRAETPEAIKIAVPYIHRILKAMHIPILGVEGYEADDVIGT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
               AEK+G+ V +++ DKD  QLV+    +Y    +    E + ++ V++K+ I  P++
Sbjct: 123 IAGKAEKQGYEVFMVTPDKDFAQLVTEHIKIYKPGLKGGDVEILGVKEVLEKYEIENPKQ 182

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++    + GDS+DNIPG+ G+G KTA   ++EYG++EN+L N  ++K  K RE +   AE
Sbjct: 183 IIDYLGMMGDSVDNIPGLEGVGEKTAKKFIKEYGSMENLLANTHQLK-GKLREKVEASAE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              +S+KL  +  D PI    E   LE  N   +    + +EF +L   +   +      
Sbjct: 242 RGLMSKKLATILCDAPIEFHQEEYDLETPNFEEVKQIFEEIEFRRLYENLYKAF------ 295

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    +TEN   A E + D+D+     Q    SD  +    + T  K  +E  + L
Sbjct: 296 ---------STENS--AEEKKSDKDSVQSPVQLDLFSDFEAL--EQATTTKHTIEDREHL 342

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQK 417
            QY          ++T+  Q  + +      A  F   T ++D   ++ I I+ S    K
Sbjct: 343 YQY----------IDTEKGQLLLLQNLLKQKAVCFDTETTSLDEMEAELIGISFSY---K 389

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++     ++ +  + ++         + I+   + FFE E  LKI HN+KYD  VL 
Sbjct: 390 KGLAY-----YVPIPENRAE--------AQAIVERFRPFFEKESILKIAHNLKYDYKVLL 436

Query: 478 RYGISMRG-FEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPID 531
            YGI + G   D M+  Y+L+  GR  H +  +++ +L+Y        I K  K    + 
Sbjct: 437 NYGIEVTGNLFDTMIAHYLLNPDGR--HGMDYLSEMYLNYKPIALETLIGKKGKGQKTLR 494

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +I      ++A E++++  QL+ +  P+L  E++  V+ +++ P++ V+++ME+TG+ +D
Sbjct: 495 EIDLPTQTQYAAEDADITFQLYEIFSPQLKKEEVEEVFYKIEMPLVKVLAKMELTGVALD 554

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQW 650
           ++ LK  S  + ++L  LE  I++ +GE+FN++SPKQLGDILF KLK  P   KTKTGQ+
Sbjct: 555 EEWLKDESISLEQDLKILEGQIFEQAGEEFNINSPKQLGDILFEKLKLDPKAKKTKTGQY 614

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +T++D+ Q     + IIK ILE+RQL K+KSTY D+LPN I+    RVHT ++     T
Sbjct: 615 -STSEDVLQKLSHKHEIIKLILEYRQLQKLKSTYVDALPNQISPIDGRVHTSFAQTVAAT 673

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T+ GQ++R AF++P   K++SADYSQIELR++A I+    + + 
Sbjct: 674 GRLASNNPNLQNIPIRTERGQQVRGAFVAPKGSKIVSADYSQIELRLIAEISGEETMIKA 733

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIH   A+++F V + +VS   R  AKT+NF IIYG S F LA Q  + R++A  
Sbjct: 734 FKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGIIYGQSAFALADQTGLSRTDAKQ 793

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  Y+  +P +  ++ +     R+ GYVETI GR+ H  +INS    +R   ER A+NA
Sbjct: 794 LIDSYYETYPKLKAFMTEQVQVARKKGYVETIMGRKRHLKDINSNNFVVRGHAERNAVNA 853

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI +   ++   L TKMLLQ+HDELVFEVP EEI  A+ +I   ME 
Sbjct: 854 PIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQVHDELVFEVPNEEIEVATTLIKQEMET 913

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A     + +VPL   + V +NW E
Sbjct: 914 AY----STKVPLLTEVGVGDNWLE 933


>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
          Length = 929

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 359/984 (36%), Positives = 538/984 (54%), Gaps = 78/984 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A   LS   DG P  A+ G  NML +L    R + +  + AV+FD
Sbjct: 6   LLLVDGSSYLYRAYHAMAQLSAP-DGAPTGALYGVLNMLRRL----RADYVHDYCAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122
                FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   EADD+I 
Sbjct: 61  AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++   
Sbjct: 117 TLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+        L
Sbjct: 177 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVVEHAAEIK-GKVGENLQAALPQLPL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDCDA 296
           S  LV ++TDV +     H  L D         P+      A++F +   R   T+  +A
Sbjct: 236 SYDLVTIKTDVDL-----HTELSDGLESLRRTSPKWSQL--AVDFKRWGFR---TWLKEA 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +      D +   +  I  +  +D +T+               I     P+KL      
Sbjct: 286 ESRMHEAADGDLFGSDTIGEQAALDMETS-----------SEKIIEHAPAPEKL------ 328

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL           T ++DA ++  + I+I+    
Sbjct: 329 ----------DYQAVTTEAQFAALLDKLAQADKIGIDTETTSLDAMNAALVGISIAFQAG 378

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K         ++I   V  S  +  +    + +L YLK   EN    KIG N+KYD+ V 
Sbjct: 379 K--------AVYI--PVGHSLTAAPEQLDLQYVLGYLKPHLENPALKKIGQNLKYDQHVF 428

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 429 ANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGFAD 487

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 488 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 546

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 547 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 606

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 607 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 665

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 666 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 725

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A  
Sbjct: 726 FQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKT 785

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 786 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 845

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V + L    L +K+++Q+HDELV EVPE E+ +  + +   M K
Sbjct: 846 PMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDSVKEKLPQIMAK 905

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
             +    L+VPL   + V  NW+E
Sbjct: 906 --VDDGMLKVPLVAEVGVGMNWEE 927


>gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 367/977 (37%), Positives = 546/977 (55%), Gaps = 79/977 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS+++RA+++ P L+    G    AI G  NML  L+    K+   SH  V
Sbjct: 6   ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVVNMLKSLI----KQYDPSHMVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKANRP +P+ L  Q+  +    +A G P I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPLHSIIKAMGFPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +  IA ++   V + + DKD+ QLV+    L +T+ +   D E V++K+G+ PE ++   
Sbjct: 121 FARIASEQQRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPETVVEKFGVGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD +DNIPG+ G G KTA   LQ+YG+L+ ++ NAS IK  K  E + +  +   LS
Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLQKYGSLQGVIDNASDIK-GKIGEKLAKAIDHLPLS 239

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK-LINRVATTYDCDAANIEPV 302
            +L  ++ DV +   L+   L+  N   LI+     EF + L   +    D D       
Sbjct: 240 YELATIKCDVEVESDLDTFKLQTPNKDELIALYGECEFRRWLAELLDNPKDADTH----- 294

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L + T EN+   +E +   +T +  +QF +L                 +E+L +   + 
Sbjct: 295 -LAVPTQENELPKVE-DAHYETILTEAQFETL-----------------IEQLNEAELFA 335

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + ++ T +   K     +      G A++  I      +   P  +++  + Q      
Sbjct: 336 FDTET-TSLEYMKAQLVGMSFAVKAGEAAYLPIAHD---YPGAPEQLSLEFVMQ------ 385

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--- 479
           K+  I  D     ++   G+N      L Y K    N  +   G  IK+D + L  Y   
Sbjct: 386 KLGPILAD----ENKAKVGQN------LKYDKSVLANAGYELNG--IKFDTM-LESYVFN 432

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
            +  R   D + + Y+     S  DIA   +K L++ + E+ K+                
Sbjct: 433 SVGTRHDMDSLALKYLGHKNISFEDIAGKGKKQLTFNQIELEKAAP-------------- 478

Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L PKL   EKL  V+E ++ P++ V+S +E TG+ ID ++L   
Sbjct: 479 -YAAEDADITLRLHQVLWPKLEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLATH 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S  + + LL LE+  ++++GE FNLSSPKQL  +LF KL+ P   KT  G   +TA+++ 
Sbjct: 538 SQRLGERLLELEKEAFEIAGEPFNLSSPKQLQVLLFEKLELPVIKKTPKGA-PSTAEEVL 596

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D P+ K I+E R LSK+KSTY D LP  +N+RTQRVHT Y  A T TGRL+S +P
Sbjct: 597 QELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDP 656

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G++IR AFI+    K+++ADYSQIELRI+AH+++   L   F N LD+H
Sbjct: 657 NLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANGLDVH 716

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AAE+FGV +E+V+  MRR AK +NF +IYG+S F LA QL +PR EA  YI +YF R
Sbjct: 717 SATAAEVFGVELEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFER 776

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPG+ EY+E T+    +NGYVETIFGRR+H  EIN+   + R   ERAAINAP+QG+AAD
Sbjct: 777 FPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAAD 836

Query: 899 ITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I ++AM+SVH  +      T K+L+Q+HDELVFE+  E     ++ I   M +A      
Sbjct: 837 IIKKAMLSVHAWVNQQAPNTVKLLMQVHDELVFEIKTECTEQYTKQICELMSQAA----Q 892

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V     +NW++
Sbjct: 893 LDVPLIVEADEGDNWEQ 909


>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
 gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
          Length = 954

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 367/1003 (36%), Positives = 548/1003 (54%), Gaps = 88/1003 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K  G P  A+ G  NML  L+         SH AV
Sbjct: 6   KNLLVLVDGSSYLYRAFHAFPPLTNKQ-GEPTGAMYGVLNMLKSLIAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLLSIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQASQAGKHVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G+++ I  N  ++ +   R        +    
Sbjct: 181 ALLGDSSDNIPGVKGVGEKTAIALLQGIGSMQAIYANLDKVAELSFRGAKTFAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           ETA LS  L  ++TDV + +  + L+ +     +L+      EF + +N V      + A
Sbjct: 241 ETADLSYLLATIKTDVALDVTYDQLVTQPQQRDQLVELFGRYEFKRWLNEV-----MNDA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV                     T     +  +    T  ++SEQ           K
Sbjct: 296 N--PV---------------------TQTSAEKIPNNYQATQAVSSEQKSAPFV-----K 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +S   I+  +Y  + + +   +W+ KL+     +    TD +DA  +  + I+    +  
Sbjct: 328 IS---IDRTAYDCVNSPELFTKWLAKLQMAELVAVDTETDNLDAMQANLVGISFGLENG- 383

Query: 418 DDTSFKVETIFIDLSVH------TSQDSTGK-------------NTLTK-EILSYLKKFF 457
                  E  +I L+        T  D  G+             N L K + L  LK   
Sbjct: 384 -------EACYIPLAHKGKITQPTQVDLFGESEAELDEVEALLPNQLNKADCLVQLKPIL 436

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY 515
           EN +  KIG NIKYD  +  R GI ++G   D ML SY LDS GR  H++ ++A+++L +
Sbjct: 437 ENPNIRKIGQNIKYDLTIFARNGIELQGVAFDTMLQSYTLDSTGR--HNMDNLAERYLGH 494

Query: 516 TR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYER 571
                +E+    K  +  D+I   +  E+A E++ + ++L  LL  +L    +L+ ++E+
Sbjct: 495 QTIPFEELAGKGKHQLTFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQ 554

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P++ V+S++E  G+ ID   L   S EI + L  LE  ++  +GE FNL+S KQL +
Sbjct: 555 IEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEAGEVFNLASTKQLQE 614

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL  P   KT  G   T  + LE++    + +   ++E R LSK+KSTY D LP  
Sbjct: 615 ILFNKLGLPILKKTPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQM 674

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN +T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYS
Sbjct: 675 INAQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYS 734

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRI+AH+A    + + F    DIHR  AAEIFGV +E V+ + RR AK INF +IYG
Sbjct: 735 QIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYG 794

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +S F LA QL I R++A  Y++ YF R+P + +++   +    + GYVET+FGRR++  E
Sbjct: 795 MSEFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAAEKGYVETLFGRRLYLPE 854

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           INS     R   ER AINAP+QG+AADI + AMI + +++ + +    M++Q+HDELVFE
Sbjct: 855 INSSNQMRRKAAERVAINAPMQGTAADIIKVAMIGIDQAVRNCE-DIAMIMQVHDELVFE 913

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           V  + +   +Q+I   MEKA    I L+VPL   + V +NW E
Sbjct: 914 VKADRVEHYTQLIKAEMEKA----IELKVPLIAEVGVGSNWDE 952


>gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
 gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
          Length = 887

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 346/941 (36%), Positives = 518/941 (55%), Gaps = 70/941 (7%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+   ++  +   AVIFD    TFR+++Y  YKA+RP +P+ L  Q+  +    +A G+
Sbjct: 1   MLRAMMRQFASERMAVIFDAKGKTFRDDMYDQYKAHRPPMPDDLRCQIEPLHQIIRAMGL 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P I I+G EADD+I T    A + G  V I + DKD+ QLV+    L +T+    +D E 
Sbjct: 61  PLISIEGVEADDVIGTLAAQASQAGMPVLISTGDKDMAQLVNDHVTLINTMTNVVMDREG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ- 226
           VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I + 
Sbjct: 121 VIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGDKTATALLQGIGGLEALYANLDKIAEL 180

Query: 227 -----KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI--LEDCNGPRLISFLKAL 279
                K   + + E  + A LS +L  ++ DV +    + L+    DC+   LI+    +
Sbjct: 181 GFRGSKTMAKKLEENRDNAWLSYQLATIKLDVELDHTPQSLLKTTPDCDA--LIALYGKM 238

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
            F   +  +    +      EP+                          +Q    S Q  
Sbjct: 239 AFKSWLTELLDGGNGVVEAREPI--------------------------TQREVASGQAH 272

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
            + SE              S   I+   Y  I++ +    W+ KL+     +F   TD++
Sbjct: 273 TVMSEH-------------SAVTIDRSQYQTILDEQSFAIWLAKLKQAEVFAFDTETDSL 319

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D   +  + ++ + + + +     V   ++D      +D          +L+ LK   EN
Sbjct: 320 DYMVANLVGLSFA-VAEGEAAYVPVGHDYLDAPQQLDRDW---------VLAQLKPLLEN 369

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR- 517
               K+G N+KYD  V+ RYGI+MRG   D ML SYV +S     D+ S+A ++L ++  
Sbjct: 370 PQLAKVGQNLKYDASVVARYGITMRGIAHDTMLASYVYNSVGGKQDMDSLALRFLQHSCI 429

Query: 518 --KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDK 574
             +++    K+ +  ++I   Q   +A E+++V L+L   L+  L  +  L  VY  ++ 
Sbjct: 430 SFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLQALLEADAPLFGVYRDIEV 489

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P++ V+S+ME TG+ ID  LL   S EI++ L+ LE   Y+L+ ++FNLSSPKQL  ILF
Sbjct: 490 PLVPVLSRMERTGVLIDDQLLAIQSQEIAQRLVELERKAYELADQEFNLSSPKQLQTILF 549

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            ++K P   KT +G   T  + L+++   D P+   ILE+R L+K+KSTY D LP  IN 
Sbjct: 550 EQMKLPVVKKTPSGTPSTNEEVLQELAL-DYPLPAVILEYRGLAKLKSTYTDKLPKMINP 608

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            T RVHT Y  A T TGRL+S +PNLQNIPI+   G++IR+AFI+P   K+++ DYSQIE
Sbjct: 609 TTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNQEGRRIRQAFIAPSGWKIMAVDYSQIE 668

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+AH++    L   F+   DIH   AAEI GV+I++V+ + RR AK +NF +IYG+S 
Sbjct: 669 LRIMAHLSGDPALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNFGLIYGMSA 728

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F LA QL IPRSEA  Y+ +YF R+PG+  Y+E+T++   + GYVET+FGRR+H  EI S
Sbjct: 729 FGLAKQLGIPRSEAQHYMDKYFERYPGVLRYMEETRSMAAEQGYVETLFGRRLHLPEIQS 788

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVP 933
                R   ERAAINAP+QG+AADI ++AM+ V   +E + +   K+L+Q+HDELVFEV 
Sbjct: 789 RNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDNWIETEGQGRVKLLMQVHDELVFEVQ 848

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E  ++     +   ME A      L VPL  +    NNW E
Sbjct: 849 ESALSEIESKVQELMESAA----QLNVPLVADAGHGNNWDE 885


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 344/976 (35%), Positives = 536/976 (54%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGSS+IYRA++A   LS    G P NA+ GF  ML K++    K+   +H AVIFD
Sbjct: 8   LYLLDGSSYIYRAYFAIRHLSSP-SGFPTNALYGFTQMLLKVM----KDRAPAHVAVIFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              +TFRNE++P YKA R  +PE L  Q+  ++   +AF IPA+E+ GFEADDII T   
Sbjct: 63  AGKITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFNIPALELPGFEADDIIGTIAK 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             E +G A  +++ DKDLMQ+VS    L DT+KE+   I  V +K+G+ PE++V + AL 
Sbjct: 123 KCEAQGMACVVVTGDKDLMQIVSDRVTLLDTMKEKSFGIADVYEKFGVAPERVVDVLALW 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+PGIG  TA  LLQE+G+L+ +L  A  +K K                   
Sbjct: 183 GDASDNIPGVPGIGEVTAKKLLQEFGSLDELLARAGEVKGK------------------- 223

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
                                NG RL+ F           R   T DC+           
Sbjct: 224 ---------------------NGERLVEFADQARLC----RTLATIDCN----------- 247

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP-INN 365
                  + IE  +D D  +       L+    +          F+  L+ L+  P ++ 
Sbjct: 248 -------VPIEYSVD-DFAVTPPDNRRLAALFREYG--------FVTLLKDLTSSPTLSC 291

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           D Y+ ++  +++++ V +LE   + +  + T +++   ++ +  A+S            E
Sbjct: 292 DRYSLVLTEEELRRVVAELEAAPAFAIDLETTSLNPREARVVGYAVSCRPH--------E 343

Query: 426 TIFIDLS-VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             +I +   +          L  EIL  L K   +    KIG N+KYD  VL   G  M 
Sbjct: 344 ARYIPVGHRYLGAPEQLPEALVLEILGPLLK---DPARRKIGQNLKYDYQVLRMAGFEME 400

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML +Y+++  R+S  + ++A ++L +   +  E+  S K  +   ++   +   
Sbjct: 401 GIWCDTMLAAYLVNPARNSQGLDALALEYLDHRMISYAEVAGSGKCELNFSEVDLDRAGP 460

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           ++ E+++    L  +L PK+  + +  +   L+ P++ +++ ME+ G+++D DL+K++SA
Sbjct: 461 YSCEDADATYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSA 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQWKTTAQDLE 658
              K L+ LE  I++  G  FN++SPKQLG++LF ++    G KTK  TG W T  ++LE
Sbjct: 521 GFGKQLIELEAQIHEHCGGPFNINSPKQLGEMLFERMGLAVGKKTKGKTG-WSTNVEELE 579

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   ++ + + +L++R +SK+KSTY D+LP  ++  T RVHT Y+ A T TGRL+S +P
Sbjct: 580 RL-AEEHEVARLLLQYRSISKLKSTYTDALPKLVDPATGRVHTSYNQAVTSTGRLSSSDP 638

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+ + G+ IRRAFI+ P   ++SADYSQIELR+LAH++    L + F    DIH
Sbjct: 639 NLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEAFAAGEDIH 698

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  A+E+FG+  E V+ +MRR AK INF +IYG   F LA +L +   +A  +I  YF R
Sbjct: 699 RRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKAFIDSYFER 758

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
             G   +++         G+V TI GRR+   EI S   ++R   +R A+N PIQGSAAD
Sbjct: 759 HSGARSFLDSCIREAEVCGFVTTIMGRRLCIPEIASKNGNVRAFAQRNAVNYPIQGSAAD 818

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ V + ++  ++A+++++Q+HDELVFEVPE E     +++   ME A LP   L
Sbjct: 819 IIKAAMLRVIRRMQQERVASRLIMQVHDELVFEVPEAERDLMEELVRTEMEGA-LP---L 874

Query: 959 RVPLKVNIKVSNNWQE 974
            VPLKV++    NW E
Sbjct: 875 SVPLKVDLNFGLNWSE 890


>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
          Length = 923

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 350/974 (35%), Positives = 544/974 (55%), Gaps = 62/974 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  EG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    L 
Sbjct: 119 RAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K  K  +NI +  +  +L  +L
Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLK-GKISQNIKDNLDNIKLDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +      
Sbjct: 238 ASIVCDLPLELDWHELKLIDPNVDALRNLYTELEFRNQLQSLEHPNNPNSSSYK------ 291

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              +     ++ ++    +I+T   +SL+ Q  ++ +      L  E   +L Q   N D
Sbjct: 292 --QQASQTVVQNDVKPTESIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLLQRMQNAD 349

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +   + T  +   + ++       F I  D  DA++  P+A                  
Sbjct: 350 HFAIDIETTSLDYRIAEM-----VGFSIAFDAQDAYYV-PLA------------------ 385

Query: 427 IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                  H  +++  +  L +E IL+ +K   ENE   KIGH++KYD  +   +GI ++G
Sbjct: 386 -------HNYENAPQQ--LNREQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKG 436

Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
            + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       +
Sbjct: 437 WYFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHY 496

Query: 542 AIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L  +S 
Sbjct: 497 AAEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSV 556

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E +K    LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+I
Sbjct: 557 EFAKTREGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI 616

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PNL
Sbjct: 617 ---EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNL 673

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR 
Sbjct: 674 QNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRR 733

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+P
Sbjct: 734 TAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYP 793

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI 
Sbjct: 794 GIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADII 853

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI V K L   K   K+LLQ+HDELVFE  +      S+ I   ME      + + V
Sbjct: 854 KLAMIEVDKVLP--KDQAKLLLQVHDELVFEADQNIAEELSKQIAKVMESV----VEISV 907

Query: 961 PLKVNIKVSNNWQE 974
           PL V +    NW +
Sbjct: 908 PLVVEVGQGLNWDD 921


>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
 gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
          Length = 935

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 361/997 (36%), Positives = 546/997 (54%), Gaps = 87/997 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNKPTLLLVDGSSYLYRAYHAMAQLTAP-DGAPTGALYGVLNMLRRL----RADYVHDY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 56  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVE 111

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T   +A + G+ V + + DKD+ QLV+    L +T+  EK+DIE V +K+G+ P
Sbjct: 112 ADDVIGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGEKLDIEGVKEKFGVRP 171

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ +K  K  EN+   
Sbjct: 172 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEVK-GKVGENLQAA 230

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVAT 290
                LS  LV ++TDV +     H  L D         P+      A++F +   R   
Sbjct: 231 LPQLPLSYDLVTIKTDVDL-----HTELSDGLESLRRTSPKWSQL--AVDFKRWGFR--- 280

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T+  +A +      D +   +  I  +  +D +T+                 SE+ P+K 
Sbjct: 281 TWLKEAESRMHEAADGDLFGSDTIGEQAALDMETS-----------------SERLPEKA 323

Query: 351 FL-ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
              E+L            Y  +         + KL           T ++DA ++  + I
Sbjct: 324 VAPEKL-----------DYQAVTTEAQFAALLDKLSQADKIGIDTETTSLDAMNAALVGI 372

Query: 410 AISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           +I+         F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N
Sbjct: 373 SIA---------FQAGEAVYI--PVGHSLTAAPEQIDLQDVLGRLKPHLENSALKKIGQN 421

Query: 469 IKYDKLVLHRYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
           +KYD+ V   YGI++ G        D ML SY+++S    H +  ++++WL     T + 
Sbjct: 422 LKYDQHVFANYGIALNGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYES 480

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           +       I    ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V
Sbjct: 481 LCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQV 539

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           + +ME  G+QID+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  
Sbjct: 540 LFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGI 599

Query: 640 PSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           P+    KT  G   T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  
Sbjct: 600 PTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDG 658

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVHT Y+ A  +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI
Sbjct: 659 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 718

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH++    L   F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + L
Sbjct: 719 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGL 778

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A  L I    A ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I++  +
Sbjct: 779 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNA 838

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           + R   ERAAINAP+QG+A+D+ +RAMI V   L+   L TK+++Q+HDELV EVPE E+
Sbjct: 839 NARAGAERAAINAPMQGTASDLIKRAMIDVSCWLDSDGLKTKLIMQVHDELVLEVPEAEL 898

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               + +   M K     +N  VPL   + V  NW+E
Sbjct: 899 DLVKEKLPQIMAKVDEGMLN--VPLVAEVGVGMNWEE 933


>gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 351/990 (35%), Positives = 536/990 (54%), Gaps = 98/990 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+FD
Sbjct: 6   LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y  LE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +    D   A 
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E + ++  T E K  A E        ++ SQF +                         
Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W++KL      +F   ++  DA  ++ + ++ +T  Q  
Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAT--QTH 362

Query: 419 DTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL- 476
           + ++  +   ++ +     +D+         +L  LK   E+    K+G + K+   +L 
Sbjct: 363 EAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLA 413

Query: 477 -------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525
                     GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI     
Sbjct: 414 NCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGA 473

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQME 584
             +  D+I+  Q  ++A E +++ L+L  +   +L  +  L  V   ++ P++ V++ +E
Sbjct: 474 KQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIE 533

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +K
Sbjct: 534 RQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSK 593

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y 
Sbjct: 594 TATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 653

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+ 
Sbjct: 654 QAVGVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQD 713

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + 
Sbjct: 714 EGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVD 773

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   E
Sbjct: 774 RKQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAE 833

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I
Sbjct: 834 RMAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQI 893

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M  A      L VPL V + V NNW E
Sbjct: 894 RPHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
          Length = 927

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 362/983 (36%), Positives = 534/983 (54%), Gaps = 84/983 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLL---SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDGSS++YRA++A P L          P  AI G  NML  LL    KE    H AV
Sbjct: 16  LVLVDGSSYLYRAYHAMPDLRAVPSDPQSAPTGAIRGMINMLQALL----KEYPTEHMAV 71

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR  +YP YKA+R  +P+ L  Q+  +    +  G+P + +   EADD+I T
Sbjct: 72  VFDAAGATFREALYPQYKAHRAPMPDDLRVQIEPIDEVIRLLGLPVLRVPDVEADDVIGT 131

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G+ V I S DKDL QLV     + DT+  +  DI  V  ++G+PP  MV  Q
Sbjct: 132 LAKTAAAQGWRVVISSGDKDLSQLVDERITIIDTMSGKVRDIAGVQAEFGVPPALMVDYQ 191

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTAA  LQ YG+L+ I+ +A  IK     EN+    +   L+
Sbjct: 192 TLVGDAVDNVPGVDKVGPKTAAKWLQAYGSLQAIVEHAHEIKGVAG-ENLRRALDWLPLA 250

Query: 244 RKLVMLRTD------VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           R+L+ +RTD      VP    L+ L     + P L  F +   F  L+            
Sbjct: 251 RQLLTIRTDCDLDGHVPGLPALDALRRRAPDVPALRDFYQRYGFRGLLR----------- 299

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 LD  ++E              T  + Q   L+D  +                  
Sbjct: 300 -----ALDDGSSETA-----------PTAASGQGELLADAPA------------------ 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             Q P+    Y  + +   +  W+Q+L +    +    T ++D   ++ + I+ S     
Sbjct: 326 --QPPLR---YETVRDWHTLDGWLQRLRSAPLVALDTETTSLDEMAARLVGISFSVAPG- 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  E  ++ L+ H    + G+  L  E+L+ L+ + E+    K G +IKYD+ VL 
Sbjct: 380 -------EAAYLPLA-HEDPGTAGQLPL-DEVLARLRPWLEDPAAAKCGQHIKYDQHVLA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSS-IPIDKI 533
            +GI ++G+  D ML SYVL+  R  H++ S+A++ L  S  R E L  + ++ IP  ++
Sbjct: 431 NHGILVQGYVHDTMLQSYVLEVHRP-HNLESLAERHLGRSAMRYEDLCGKGAAQIPFARV 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +   +A E++   L +  +L P+L  +  L     L+  +  V+ +ME  G+ ID  
Sbjct: 490 PIERAAPYACEDAEQCLAVHQVLWPQLQAQPALQRIYELEVAVSGVLWRMERHGVLIDAA 549

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L++ S  + + + +LE   + L+G  FNL SPKQ+ ++ + +LK P   KT TG   T 
Sbjct: 550 ELQRQSQALGERIRALEAEAHALAGMPFNLGSPKQIAEVFYDRLKLPVLKKTATGAPSTD 609

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++   D P+   +LE R L K+KSTY D LP  IN  T RVHT ++ A  +TGRL
Sbjct: 610 EEVLEKL-AEDYPLPARVLEHRSLVKLKSTYTDKLPTMINPATGRVHTHFAQAVAVTGRL 668

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS EPNLQNIPI+T  G++IR AFI+PP   + SADYSQIELRI+AH+++   L + FE 
Sbjct: 669 ASAEPNLQNIPIRTPEGRRIRAAFIAPPGHVIASADYSQIELRIMAHLSQDPALLRAFEQ 728

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LD+HR  AAE+FGV+ E V+P+ RR+AKTINF +IYG+SP+ LA  L I  S A  YI+
Sbjct: 729 GLDVHRATAAEVFGVSPEHVTPEQRRYAKTINFGLIYGMSPYGLAKALGIDASAAKSYIE 788

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF RF G+  Y+E+T+   R  GYVET+FGRR+   EI SP    R   ERAAINAP+Q
Sbjct: 789 RYFERFAGVRAYMEQTRAQARARGYVETVFGRRLVLPEIQSPNGPRRAAAERAAINAPMQ 848

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +M++V ++L++ +  T+M+LQ+HDELVFEVP EE+      +   M     
Sbjct: 849 GTAADLIKMSMVAVQRALDEQQRRTRMVLQVHDELVFEVPNEEVDWVRTEVPRLMAAVA- 907

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL  ++ V  NW++ +
Sbjct: 908 ---TLRVPLVASVGVGANWEQAH 927


>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 963

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 364/988 (36%), Positives = 554/988 (56%), Gaps = 86/988 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKL-LQNSRKESIASHFAVIF 65
           L LVDGSS++YRAF+A P LS    G P  AI G  NML +L LQ S +     + A++F
Sbjct: 40  LLLVDGSSYLYRAFHAFPPLSNS-KGEPTGAIYGVLNMLRRLFLQYSPQ-----NMAIVF 93

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+ ++ +YKA+RP +P+ L  Q+  +     A G+P + ++G EADD+I T  
Sbjct: 94  DAPGETFRSALFSEYKAHRPSMPDDLRAQIAPLHHILSAMGLPLLVVEGVEADDVIGTLA 153

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             AEK G+ V I + DKD+ QLVSP   L +T+ ++ +D + V +K+G+PP+ +V L AL
Sbjct: 154 KDAEKAGYEVVISTGDKDMAQLVSPHITLINTMNDKTLDPDGVCEKFGVPPDLIVDLLAL 213

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYAET 239
            GDS DNIPG+PGIG KTA  LLQ  G L+ +  +  +I     R      E ++++ E 
Sbjct: 214 MGDSADNIPGVPGIGEKTAQALLQGMGGLDKLFDHLDKIADLSFRGARTLAEKLIKHQEQ 273

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LSR+L  ++TDV + I  + L  + C  P  I  LK L                    
Sbjct: 274 AYLSRQLATIKTDVSLDIRCDEL--QVC--PPQIDELKKL-------------------- 309

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                  +  E K    + E  +      +  +S S + + I+S   P K          
Sbjct: 310 ------FSHYEFKTYLADVEAGK---WPATHLNSKSSKNNPISSSTDPLKAIF------- 353

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               + D Y  I+N +    W+++L+     +    TD +D   +  I I+ +    K  
Sbjct: 354 ----STDDYETILNEERWFVWLERLKKASLFAIDTETDGLDTKTAHLIGISFAVAPGK-- 407

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ L  H   ++  +    K +L+  K   E+   LK+G N+K+D+ +L  Y
Sbjct: 408 ------AAYLPLG-HDYPEAPAQLNRDK-VLALFKPLLEDPQALKVGQNLKFDQSLLANY 459

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535
           GI ++G   D ML SYV +S    HD+ S++++ L++   + ++I    K+ +  ++I  
Sbjct: 460 GIKLQGIAFDTMLESYVFNSVAGRHDMDSLSERHLNHKTLSFEDIAGKGKNQLTFNQIPL 519

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            Q   +A E+++V L+L L L PKL     L+ V + ++ P++ V+S+ME TG+ ID D+
Sbjct: 520 EQAAIYAAEDADVTLRLHLALWPKLKENPDLMKVLQEIEMPLLSVLSRMERTGVMIDPDI 579

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   S E+   L  LE+  +D++GE FNL+S +QL  IL+ K   P   KT  G   T  
Sbjct: 580 LLNHSKELQLRLTELEKKAHDIAGETFNLNSTQQLQTILYEKQTLPVLKKTPKGAPSTNE 639

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L ++   D P+ K ILE R L+K+K+TY D LP  I+  + RVHT Y  A T TGRL+
Sbjct: 640 AVLAELAL-DYPLPKIILEHRSLTKLKTTYTDKLPLMIHPLSGRVHTSYHQAVTSTGRLS 698

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++ + G++IR AFI+P   ++++ADYSQIELRI+AH+++   L   F   
Sbjct: 699 SRDPNLQNIPVRNEEGRRIRHAFIAPRGYQIVAADYSQIELRIMAHLSQDQGLLNAFSEG 758

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + AAE+FG+ + +VS Q RR AK INF +IYG+S F LA QL + R EA  Y+  
Sbjct: 759 QDIHLITAAEVFGLPVSQVSAQQRRSAKAINFGLIYGMSAFGLARQLNVSRFEAERYMNL 818

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +P + +Y+++T+    +NGYV T+ GRR++  +I+S  ++ R   ER AINAP+QG
Sbjct: 819 YFTHYPKVLDYMQRTREEAVKNGYVTTLEGRRLYLADIHSKNANRRKAAEREAINAPMQG 878

Query: 895 SAADITRRAMISVHKSL--EDHKLATK------MLLQIHDELVFEVPEEEITTASQIIVH 946
           +AADI +RAMI +   L  E+ KLA K      +++Q+HDELVFEV +  + +A+  I  
Sbjct: 879 TAADIIKRAMIHIDFWLQQEEQKLAPKQKSRVNLIMQVHDELVFEVHDSVLKSATDKIRE 938

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            MEK+        + LKV+I   NNW++
Sbjct: 939 LMEKST-----QNLLLKVDIGFGNNWEQ 961


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 952

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 371/996 (37%), Positives = 548/996 (55%), Gaps = 76/996 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ +  G P  A+ G  NML  L+         SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAFHAFPPLTNRL-GEPTGAMYGVLNMLKSLISQVN----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFR E++  YK++RP +P+ L PQ+ PL R+  +A GIP I I+G EADD+I 
Sbjct: 61  VFDTKGKTFRYELFKQYKSHRPPMPDDLRPQIEPLHRI-IKALGIPLISIEGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A K+G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++  
Sbjct: 120 TLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR--ENILEYAET- 239
            AL GDS DNIPG+ G+G KTA  LLQ  G+LE I  N  +I     R  +N     E  
Sbjct: 180 LALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATLSFRGAKNFAPKLEAE 239

Query: 240 ---ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A LS  L  ++TDV + +  + L+ +  +   L    +  EF + +N V        
Sbjct: 240 KANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELAQLFEHYEFKRWLNEVNQ------ 293

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N  PV                     T     +  +    T  + +E+    +      
Sbjct: 294 -NANPV---------------------TQTSAEKVPNNYQVTQAVRNEENVANVV----- 326

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS---- 412
                 I+   Y  +   + +  W++KL      +    TD++DA  +  + I+ +    
Sbjct: 327 -----EIDRSKYETVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENG 381

Query: 413 -----TLDQKDDTSFKVETIFID--LSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLK 464
                 L  K     +   +F D   S   S D   KN L     LS LK    N    K
Sbjct: 382 EACYIPLGHKQKAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKK 441

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KE 519
           IG NIKYD  +   YGI ++G   D M+ SY  +S GR  H++  +A ++L +     +E
Sbjct: 442 IGQNIKYDLTIFANYGIELQGVAFDTMIESYTQNSTGR--HNMDDLAARYLGHKTIPFEE 499

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMID 578
           +    K+ +  DKI  ++  E+A E+++V ++L  +L  KL  E +L+ +++ ++ P++ 
Sbjct: 500 LAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVG 559

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID   L   SAEI K L  +E  ++  +G+ FNL+S KQL +ILF KL 
Sbjct: 560 VLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLG 619

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  INK+T R
Sbjct: 620 LPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGR 679

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y+ A T TGRL+S +PNLQNIPI+ + G++IR+AF++    K+++ADYSQIELRI+
Sbjct: 680 VHTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIM 739

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    +   F    DIHR  AAEIFGV + +V+ + RR AK INF +IYG+S F L+
Sbjct: 740 AHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLS 799

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R+EA  Y+  YF R+P + +++   +    + GYVET+FGRR++  +I S  + 
Sbjct: 800 NQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAI 859

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R   ER AINAP+QG+AADI + AMI +  ++ D+    KM++Q+HDELVFEV  ++I 
Sbjct: 860 LRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EIKMIMQVHDELVFEVKADKID 918

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             SQ+I   MEKA    I+L+VPL   + V  NW E
Sbjct: 919 HYSQLIKTEMEKA----ISLKVPLIAEVGVGENWDE 950


>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens]
          Length = 939

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 358/995 (35%), Positives = 545/995 (54%), Gaps = 94/995 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 10  LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 64

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E+Y +YKANRP +P+ +  Q+  +  +  A G P + ++G EADD+I T   
Sbjct: 65  AKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+E V +K+G+ PE+++   AL 
Sbjct: 125 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM 184

Query: 187 GDSIDNIPGIPGIGYKTAALLL--------QEYGNLE---NILINASRIKQKKRRENILE 235
           GDS DNIPG+PGIG KTA+ LL        + Y  L+    +LI  ++    K    + E
Sbjct: 185 GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLLIRGAKTLPAK----LEE 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + E A LS +L  ++ DVP+ I L+ L +   +  +L      LEF   +N         
Sbjct: 241 HKEMAFLSYQLATIKVDVPLDIGLDDLQMGPEDPAKLYELYTLLEFKSWLN--------- 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK-LFLER 354
                                  ++DRD   K  + S+         +E  P   LF   
Sbjct: 292 -----------------------DLDRDA--KRQELSA--------AAEPAPAGDLFSAP 318

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            ++ +       +Y  I++      W++KL+     +F   T  +DA  ++ + ++ +  
Sbjct: 319 AEEEAPAAPAEAAYETILDQARFDVWLEKLKNAKLFAFDTETTGIDAQQAQLVGLSFAV- 377

Query: 415 DQKDDTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            Q ++ ++  +   +I +     +D+         +L  LK   E+ + LK+G + K+D 
Sbjct: 378 -QANEAAYIPLTHSYIGVPEQLDRDT---------VLRALKPILEDPNKLKVGQHAKFDM 427

Query: 474 LVL--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
            +L           GI++RG   D ML SYVL+S  + HD+ S+AQK+L++T    ++I 
Sbjct: 428 NILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLNHTTVSFQDIA 487

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVV 580
                 +  D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V+
Sbjct: 488 GKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQTLFEKLSAIPSLASVLTDIEIPLVPVL 547

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           +++E  G  +D DLL   S E+   +++LE   ++++GE+FNL SPKQLG IL+ KL  P
Sbjct: 548 ARIERQGAFVDADLLGIQSIELGNKMVALEREAFEIAGEEFNLGSPKQLGVILYEKLGLP 607

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KT  GQ  T  + L ++   D+ + K ++E R +SK+KSTY D LP  IN RT R+H
Sbjct: 608 VLKKTAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIH 667

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T Y  A   TGRL+S +PNLQNIP++T  G++IR+AF++P   KL++ADYSQIELRI+AH
Sbjct: 668 TSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAH 727

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L   F N+LD+H   AAE+F V + +V+   RR AK INF +IYG+   +L   
Sbjct: 728 LSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKLGKD 787

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           + +    A  YI  YF R+PG+ EY+++T+      G+VETIFGRR++  +INS K   R
Sbjct: 788 IGVDTKTAKAYIDTYFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQER 847

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER AINAP+QG+AADI ++AM++V   L    L  K++LQ+HDELV EV E+ +   
Sbjct: 848 AAAERTAINAPMQGTAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQV 907

Query: 941 -SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +I VH  E A      L VPL V + V NNW E
Sbjct: 908 REEIRVHMSEAA-----KLDVPLLVEVGVGNNWDE 937


>gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121]
 gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121]
          Length = 925

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 362/976 (37%), Positives = 548/976 (56%), Gaps = 82/976 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS++YRAF+A P LS   DG P NAI G  +M+  L++      I     VIFD
Sbjct: 22  MILVDGSSYLYRAFHAIPPLSTS-DGQPTNAIRGVTSMIKSLVKTYSDSPIV----VIFD 76

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YP+YKA RP +P+ L  Q+  +    +A G+P I I G EADD+I T   
Sbjct: 77  AKGKTFRDDMYPEYKAQRPSMPDDLRLQIEPIHSIIKAMGLPLISIGGVEADDVIGTIAK 136

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           I  + G  V + + DKD+ QLV+    L +T+ +  +DIE V  K+GI PE ++   AL 
Sbjct: 137 IVGETGREVIVSTGDKDMAQLVTDKVTLVNTMTDTLMDIEGVKNKFGIGPELIIDFLALM 196

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD +DNIPG+PG+G KTA  LLQ  GNLE+I      I         L +     LS+K+
Sbjct: 197 GDKVDNIPGVPGVGEKTALGLLQGLGNLESIYSRLDEIAG-------LSFRGAKTLSKKM 249

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA-NIEPVVLD 305
                             ED      +S+  A            T  CD   + + + L 
Sbjct: 250 ------------------EDNKDMAFLSYQLA------------TIKCDVELDFDSIAL- 278

Query: 306 INTTENKGIAIE--TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            N  +NK    E  T+++  T +K      L   T+  N  +T +          +Q   
Sbjct: 279 CNAPQNKAELKEWFTKLEFKTWLK-----ELDKPTADENDAETEE----------TQIEA 323

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
              SY  +++ +    W+ K++     +F   T +++   ++ +  ++S        + K
Sbjct: 324 VEISYETVLDKEHFAIWLDKIQQAPLFAFDTETTSLNYMAAELVGFSVSV------EAGK 377

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              I +      + +   ++     +L  +K   E+   LK+G ++KYD  VL  Y I +
Sbjct: 378 AAYIPVAHDYEGAPEQLDRDW----VLEQIKPVLEDASQLKVGQHLKYDANVLANYDIEL 433

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539
           +G E D ML SY+ +S  + HD+ S+A+K+LS+   + +EI          ++I   Q  
Sbjct: 434 KGIEFDTMLESYIFNSTANRHDMDSLAKKFLSHKSVSFEEIAGKGAKQKTFNQIELEQAA 493

Query: 540 EHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++  +L   +  KL    +L+ +++ ++ P++ V+++ME TG  ID DLL + 
Sbjct: 494 FYAAEDADITFRLHQAIWAKLEKTPELVSIFKEIELPLVPVLAKMEQTGALIDPDLLHEQ 553

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S+EI+  L  LE   ++++G+ FNLSSPKQL +ILF KL+ P   KT  GQ  +TA+ + 
Sbjct: 554 SSEIATRLEELEIKAHEMAGQAFNLSSPKQLQEILFVKLELPILKKTPKGQ-PSTAEPIL 612

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D  + + I+E R LSK+KSTY D LP  I K T R+HT Y  A T TGRL+S +P
Sbjct: 613 QELALDYELPRIIMEHRSLSKLKSTYTDKLPEMIQK-TGRIHTSYHQAVTATGRLSSTDP 671

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T  G++IR+AFI+P   KLI+ADYSQIELRI++H+++   L + F N+ D+H
Sbjct: 672 NLQNIPIRTAEGRRIRQAFIAPEGYKLIAADYSQIELRIMSHLSQDPGLLEAFANNKDVH 731

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           +  AAE+F V +++V+ + RR AK INF +IYG+S F LA QL I R EA  YI+RYF R
Sbjct: 732 KATAAEVFEVALDEVTGEQRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAQKYIQRYFER 791

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+E T+   R+ GYVET+FGRR++  +I +  + +R   ER AINAP+QG+AAD
Sbjct: 792 YPGVRTYMENTREMAREKGYVETLFGRRLYLPDIKASNAMMRQAAERTAINAPMQGTAAD 851

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAMI +H  L+D  L  KM+LQ+HDEL+FEV E +++ A + I+  ME        +
Sbjct: 852 IIKRAMIEMHAWLKDTDLDIKMILQVHDELIFEVKESDLSAAQEKILDIMENTS----AI 907

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V   + + W +
Sbjct: 908 DVPLLVEAGIGDTWDQ 923


>gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 921

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 349/989 (35%), Positives = 533/989 (53%), Gaps = 96/989 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+FD
Sbjct: 6   LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y  LE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +    D   A 
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E + ++  T E K  A E        ++ SQF +                         
Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W++KL      +F   ++  DA  ++ + ++ + +   +
Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQTHE 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q  ++A E +++ L+L  +   +L  +  L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M  A      L VPL V + V NNW E
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 363/991 (36%), Positives = 551/991 (55%), Gaps = 83/991 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           LFL+DG + IYRA +A     R    G   +A+ GF N L ++L   RKE   +H AV+F
Sbjct: 4   LFLLDGMALIYRAHFALSKNPRFTSSGFNTSAVMGFTNTLMEVL---RKEK-PTHMAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A T R+  +  YKA+R  +PE L   LP +      F IP I   GFEADDII T  
Sbjct: 60  DTEAPTERHTDFVAYKAHREAMPEDLSKALPYIFKLILGFNIPVITSDGFEADDIIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EKMV 180
             AE++G+ V  ++ DKD  QLVS    +Y   +     E + ++ V+ KW +   E+++
Sbjct: 120 KKAEQKGYKVYCMTPDKDFAQLVSDNIFIYKPARMGNDMEILGVKEVLAKWEVERVEQVI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GD++DNIPGIPG+G KTA  L+++YG++ENI+ ++  +K  K RENI  +A+  
Sbjct: 180 DILGLWGDAVDNIPGIPGVGEKTAKSLIKQYGSMENIIAHSHELK-GKLRENIETHAQQG 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPR--LISFLKALEFTKLINRVATTYDCDAAN 298
            +S+KL  +  D P+   L+   LE C   R  L      LEF  L  RV      D  +
Sbjct: 239 LISKKLATIILDAPVE--LDEAGLEMCEPSRELLEPLFAELEFRTLGRRVF----GDGYS 292

Query: 299 IEPVVLDINTTENKGIAIETE------IDRDTTIKTSQFSSLSDQTSKI--NSEQTPQKL 350
           I         TE K ++I+ +      +D  TT+          + + +  N   T  + 
Sbjct: 293 I---------TEIKNVSIQQDLFGNEVVDGRTTMTVDATDIYEPEVAAVAKNINNTEHQY 343

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
            L             D++ K        + ++ L T  S  F   T   DA   + + ++
Sbjct: 344 HLA------------DTFEKRA------ELIRLLSTQKSICFDTETTGTDANQCELVGLS 385

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S          K E  ++ + V+  +         + I+   K  FEN    KIG NIK
Sbjct: 386 FSIK--------KGEAWYVPVPVNCDE--------IQPIVDEFKPIFENPAIGKIGQNIK 429

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRK 525
           +D LVL  Y ++M+G   D ML  Y++D   + H++  +A+ +L Y+   I        K
Sbjct: 430 FDMLVLKYYNVTMQGELFDTMLAHYIIDPD-TRHNMDILAENYLGYSPVSITTLIGAKGK 488

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
               +  +   +++++A E+++V LQL  +  PKL       +   ++ P+I V++ +E 
Sbjct: 489 GQGTMRDVEIEKIKDYAAEDADVTLQLKEVFEPKLQQVGGTKLATDIENPLIYVLADIEF 548

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK- 644
            G++ID D LK+ S ++  ++  LE+ +Y+ +G KFN++SPKQLG++LF KL   + AK 
Sbjct: 549 EGVRIDHDTLKEFSKDLETDISKLEKTVYEKAGVKFNIASPKQLGEVLFEKLNLDAKAKK 608

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQ++T  +D+       + I+++IL++RQL K+KSTY D+LP  +N +T RVHT Y+
Sbjct: 609 TKTGQYQT-GEDVLLALANKSDIVRDILDFRQLQKLKSTYVDALPLMVNPKTGRVHTSYN 667

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAK 763
            A   TGRL+S  PNLQNIPI+T+ G+++R+AFI      +I SADYSQIELRI+A I+K
Sbjct: 668 QAVAATGRLSSNNPNLQNIPIRTERGREVRKAFIPRNDDHVIVSADYSQIELRIIAEISK 727

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              +   F   +DIH   AA+++G  +++V   MRR+AK +NF IIYG S F L+  L I
Sbjct: 728 DANMMDAFIQGIDIHTATAAKVYGKTLDEVDGTMRRNAKAVNFGIIYGQSAFGLSQNLNI 787

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           PR EAAD I +YF ++PGI  Y+  T NF R+NG+V+T+ GRR +  +INS  +++R   
Sbjct: 788 PRKEAADIIDQYFAQYPGIKNYMSDTMNFARENGFVQTLMGRRRYLRDINSANATVRGYA 847

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AINAPIQGSAAD+ + AMI++H+  +  KL ++M +Q+HDELVF+V + EI     I
Sbjct: 848 ERNAINAPIQGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDELVFDVHQSEIEIVKPI 907

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I+ +M+ A        VP+ V I    NW E
Sbjct: 908 IMQNMQTA----FKTEVPIVVEIGTGANWLE 934


>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
 gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
          Length = 896

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 368/981 (37%), Positives = 555/981 (56%), Gaps = 104/981 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+ +RAF+A P L+    GLP  AI G  NM+ K++++ + E IA    V+FD
Sbjct: 5   LILIDGSSYFFRAFHALPPLTNSK-GLPTGAIYGVANMIKKIIKDYQPEEIA----VVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+E YP+YKA+RP +P+ L  Q  PL++L  QA G+P + I G EADD+I T  
Sbjct: 60  AKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQL-LQAMGLPLLIIDGVEADDVIGTLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A ++G  V I + DKD+ QLV+    L +T+    +DI+ V  K+G+ PE+++    L
Sbjct: 119 KQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DNIPG+   G KTA   L EY  L+N+L +A+ I  K     I EY         
Sbjct: 179 IGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLDHANEIGGK-----IGEY--------- 224

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
              LR  +P      HL L      +L++    L+    +N++                 
Sbjct: 225 ---LRASIP------HLPLSK----KLVTIKTDLDLPLNLNQL----------------- 254

Query: 306 INTTENKGIAIETEIDRDTTIKTS---QFSS-LSDQTSKINSEQTPQKLFLERLQKLSQY 361
                     +    DR+  IK +   +F S L +   +  ++++P+++           
Sbjct: 255 ----------MPKPADREQLIKLTRELEFKSWLKELLQEEENQKSPKEMGAS-------- 296

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDD 419
             NN SY  I   + +  W+  LE   S  F I T+T  +D   ++ + I+++   ++++
Sbjct: 297 --NNKSYEIITTHQQLNHWLNMLEQ--SQQFCIDTETTNLDVMQAELVGISLAV--EEEN 350

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            S+      I L+ HT     G   L KE +L+ LK   EN    KIG NIKYD  VL  
Sbjct: 351 ASY------IPLA-HTD----GSTQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKN 399

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           YGI+++G   D ML SYVL+SG   HD+ S+A K+L Y   + +++       +  D+I 
Sbjct: 400 YGITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIP 459

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E++++ L+L   L P ++ + L +V   ++ P++ V++ ME+ G+ ID  +
Sbjct: 460 VEKAGIYAAEDADITLRLHHKLYP-MLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVI 518

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L++  + + + + SLE+    L+G+ FNL+SPKQL +ILF + K P  AKT TGQ  +TA
Sbjct: 519 LEKHGSRLKEQMKSLEQEAIQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQ-PSTA 577

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + + Q    D  +   ILE+R LSK+ STY D+LP  IN +T RVHT Y+ A   TGRL+
Sbjct: 578 ESVLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLS 637

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N 
Sbjct: 638 SSDPNLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANG 697

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+EIF  N++ VS + RR AK +NF +IYG+S F LA Q+ + R +A  YI  
Sbjct: 698 WDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDT 757

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+P + EY+E+T+    Q GYVET+FGRR++  EINS     +   ER AIN P+QG
Sbjct: 758 YFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQG 817

Query: 895 SAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           +AADI ++ M++V       K  + KM++Q+HDELVFEV +E +     II   ME+   
Sbjct: 818 TAADIIKKTMLAVSNWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECRAIIHKLMEQT-- 875

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             + L VPL V+I   +NW +
Sbjct: 876 --VKLSVPLVVSIGTGSNWDD 894


>gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2]
          Length = 935

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 353/982 (35%), Positives = 531/982 (54%), Gaps = 71/982 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGSS+++RAF+  P L+    G    AI G  NML  L++        +H AVIFD
Sbjct: 9   FILVDGSSYLFRAFHGLPPLTNSK-GQDTGAIYGVVNMLKSLIRQYNP----THMAVIFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IY +YKANRP +PE L  Q+  +    +A G+P I   G EADD+I T   
Sbjct: 64  AKGKTFRDDIYEEYKANRPPMPEELRSQIEPLHTIIKAMGLPLIVESGVEADDVIGTLAC 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G    I + DKD+ QLV+    L +T+ ++ +DIE V  K+GIPPE ++   AL 
Sbjct: 124 RATEHGIDTLISTGDKDMAQLVNENVTLINTMTDQIMDIEGVNTKFGIPPELVIDFLALK 183

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETA 240
           GD +DNIPG+PG+G K+A  LL   G +  I  N  +I        K     + EY E A
Sbjct: 184 GDKVDNIPGVPGVGDKSAQALLNGIGGISAIYDNLDKIADLSFRGSKTMATKMQEYEEQA 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           RLS  L  +  D+ +   ++ L     +   L S     EF +    ++     D    E
Sbjct: 244 RLSYTLATIAIDLDLQYKIDELCPTLPDNETLQSMFAEFEFKRWHTEISALLASDGN--E 301

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P     +  EN                    S  SD  S       P+            
Sbjct: 302 P-----SKAENG----------------KSTSDASDSESNDTDVAQPES----------- 329

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I+   Y  +++    + W+++L+     +    T +++   ++ + ++   ++     
Sbjct: 330 -NIDKSGYDVVLDEATFEAWIEELKAAPLIAVDTETTSVNYMEAELVGVSF-CIEPGAAA 387

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              V   + D     S+D          +LS LK   E+E  +K+G +IKYDK VL  Y 
Sbjct: 388 YVPVAHDYPDAPTQLSRDY---------VLSALKPILESETIIKVGQHIKYDKNVLAHYD 438

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           I++ G   D ML SYVL+S    HD+ S+A  +L +     +EI       +  ++I   
Sbjct: 439 ITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEEIAGKGAKQLTFNQIGLE 498

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E++++ ++L   +  KL  E KL  +   ++ P+  V+S+ME  G+ I+   L
Sbjct: 499 EAGPYAAEDADITMRLHQAIWAKLENEPKLKALLVDVEVPVACVLSRMEQQGVLIESQRL 558

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +Q S +++  +  LE+ +++ +GE FNL SPKQL  ILF K+  P   KT  G   T+ +
Sbjct: 559 RQQSQDLATRIAELEKEVHEEAGEVFNLGSPKQLQHILFEKMSLPVIKKTPKGAPSTSEE 618

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++   + P+ K ++E+R L+K+K+TY D LP  IN RT RVHT Y  A T TGRL+S
Sbjct: 619 VLQELAL-EFPLPKKLMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITATGRLSS 677

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+ + G+K+R+AF+     K+++ADYSQIELRI+AH++    L   F +  
Sbjct: 678 TDPNLQNIPIRNEEGRKVRQAFVPREGYKIVAADYSQIELRIMAHLSGDEGLLDAFAHGR 737

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH+  AAE+FGV +++V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  Y
Sbjct: 738 DIHKATAAEVFGVTLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIPRHEAQKYMDLY 797

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ EY++ T+   ++ GYVET+FGRR++  +I +   + R   ERAAINAP+QG+
Sbjct: 798 FERYPGVLEYMDSTREGAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQGT 857

Query: 896 AADITRRAMISVHK---SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           AADI + AMI V     SLE   +   M++Q+HDELVFE+ EE +    + IV  ME+A 
Sbjct: 858 AADIIKMAMIKVDDWITSLESDDVL--MMMQVHDELVFEIREEHLEEQVKNIVSLMEQAA 915

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
           +    L VPL V+  V +NW E
Sbjct: 916 V----LNVPLVVDAGVGDNWDE 933


>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
 gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
          Length = 920

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 352/986 (35%), Positives = 549/986 (55%), Gaps = 89/986 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA   +P ++ K  GL  +A+ GFCN L ++L   +     +H  V
Sbjct: 4   LFLLDAYALIYRSYYAFLKSPRINSK--GLNTSAVMGFCNTLNEVLTKEK----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+   TFR+E +PDYKA R + PE +   +P+++   +A  IP ++  GFEADD+I T
Sbjct: 58  AFDH-GKTFRHEAFPDYKAQREETPEDIRQSVPIIKQILEAMHIPILQADGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--------DTVKEEKIDIEHVIKKWGIP 175
                  +G    +++ DKD  QL+ P   +Y        +T+ E++++      K+GI 
Sbjct: 117 VATRFGADGIDTFMLTPDKDYGQLIRPNVHMYRPRHGGGYETLGEKEVE-----AKYGIS 171

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ L AL GDS DN PG PG+G KTAA L+ ++G+++N+L +   IK  K RE + 
Sbjct: 172 TPAQVIDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNMLQHTDEIK-GKLREKVE 230

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              +  R+S+ L  +RTDVPI I LE L +E  +  RL    + LEF  LIN+       
Sbjct: 231 HAKDDIRMSKYLATIRTDVPIKIELEELKVEKADENRLRELFEELEFKTLINKF------ 284

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                      +N +E K    E ++D             ++ TS     +TP+K   + 
Sbjct: 285 -----------LNKSEAKQKNTEKQLDL-----------FAENTS--GRAETPEKANYKT 320

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L+           Y  I N  ++Q+      T G  S    T + DA  ++ + ++ S  
Sbjct: 321 LKTTPH------EYKLIGNEDEMQRICDFFMTKGFVSLDTETTSTDAISAELVGLSFSV- 373

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             +++ +F V  I  D      Q++T        I+   K  +ENE  LKIG NIKYD  
Sbjct: 374 --EENRAFYV-AIPAD-----RQEAT-------RIVGIFKPLYENEQILKIGQNIKYDYE 418

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIP 529
           VL  YG++++G   D M+  Y++      H++  +A+  L Y     +E+L  + K    
Sbjct: 419 VLSHYGVTLQGKMFDTMIAHYLIQP-ELHHNMDYMAETLLGYRTIHIEELLGPKGKKQRN 477

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +S + + E+A E++++ L+L  +L P L    L  ++  ++ P++ V++ ME+ G+ 
Sbjct: 478 MRDLSPTDIYEYAAEDADITLRLKHVLEPHLKELGLEELFWNIEMPLVRVLADMELNGVC 537

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTG 648
           +D + L++ S   +  +   E+ IY  +GE FN+ SPKQ+GDILF KL+      KTKTG
Sbjct: 538 LDTEALQETSRIFTDRMKQYEQEIYKEAGETFNIGSPKQVGDILFGKLQIMDKPKKTKTG 597

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + L+ +    +P+++NIL +R + K+ STY D+LP  IN RT  +HT ++ A T
Sbjct: 598 QYVTSEEVLQSLEA-KHPVVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQT 656

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH++    + 
Sbjct: 657 STGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMM 716

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIHR  AA+I+  +IEKV+   R+ AK  NF IIYGI+ + LA ++ IP SEA
Sbjct: 717 EAFREGHDIHRATAAKIWHEDIEKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNSEA 776

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I+ YFH FP +  Y+E+ K   R  GY ET+F RR +  +INS  +++R   ER AI
Sbjct: 777 RELIQDYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAI 836

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+ ADI + AM+ + K  ++  + +KM+LQ+HDEL F V  EE     +I++  M
Sbjct: 837 NAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEEREQVERIVIEEM 896

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           + AC     L VPL  +    +NW E
Sbjct: 897 QHAC----QLNVPLTADAGWGSNWLE 918


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 354/999 (35%), Positives = 555/999 (55%), Gaps = 81/999 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  LFL+D  + I+R +YA    P ++ K  G+  +AI GF N L  +++  + +    H
Sbjct: 3   QKRLFLLDAYALIFRGYYAFIKNPRINSK--GMDTSAIMGFMNSLMDVIKREKPD----H 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD     +R E+Y +YKA+R + PE +   +P ++   +A  IP IE  GFEADD+
Sbjct: 57  LAVAFDKGGSDYRFEMYQEYKAHRVETPEAIKIAVPYIQELLRAMHIPIIEKAGFEADDL 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175
           I T    AEKEGF V +++ DKD  QLVS    +Y   +     + + I+ WG+P     
Sbjct: 117 IGTLAKQAEKEGFKVFMVTPDKDFAQLVSENIFMYKPAR-----MGNDIEIWGVPEVLAK 171

Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
                P++++    + GDS DNIPG+PG+G KTA   L EYG LEN+L N  ++K    +
Sbjct: 172 FEIERPDQVIDFLGMMGDSADNIPGLPGVGEKTAKKFLAEYGTLENLLANTHQLK-GAMK 230

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + I    E   LS+KL  +  D P+T   +   L   +  +  +  + LEF ++  +   
Sbjct: 231 DKIEANKELGILSKKLATILLDCPVTFDADDYELSKPDVEKTDALFQELEFRQMKAQFDK 290

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS--QFS--SLSDQTSKINSEQT 346
            +       + +  + NT+E     I   I +    K++  QF     SD++     E T
Sbjct: 291 LFGS-GKEYDEIDANGNTSE-----IPQPIKKAPAKKSNEDQFDLFGFSDESD----EPT 340

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
               +   L+  + +      Y  I     ++  +Q L    S  F   T  +DA +++ 
Sbjct: 341 ANHSYYATLENTTHF------YQIIQGDLPVKLLMQNLLNQTSVCFDTETTGIDALNAEL 394

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + ++ S    K               V   +D     TL ++     + FFENE+  KIG
Sbjct: 395 VGMSFSFEKGKG------------FYVPFPEDQEEAQTLIEK----FRPFFENENIEKIG 438

Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----L 521
            N+KYD  +L  Y + ++G   D M+  Y+++     H++  +++ +L Y  K I     
Sbjct: 439 QNMKYDLKILSNYNMQVKGKLFDTMIAHYLINPDMR-HNMDVLSETYLKYAPKSIETLIG 497

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL--LHVYERLDKPMIDV 579
           K  K+ + +  +    ++E+A E++++  QL    +P  I+EK+    +++ ++ P++ V
Sbjct: 498 KKGKNQLSMRDVPLEDIKEYATEDADITFQLKEHFQP--ILEKVGTKKLFDEIEIPLVPV 555

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ ME  GI++D + LK +S ++ K + + E+ IY+ +GEKFNL+SPKQLGDILF KLK 
Sbjct: 556 LADMEKEGIRLDVEFLKNMSVDMQKEIDAFEQQIYETAGEKFNLASPKQLGDILFDKLKI 615

Query: 640 PSGAK---TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
             GAK   TKTGQ+ T  + L  +   ++ I+++ILEWRQ+ K++STY D+LPN ++K+T
Sbjct: 616 -GGAKQKKTKTGQYATGEEVLSYL-ANEHQIVRDILEWRQMVKLQSTYIDALPNQVDKKT 673

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIEL 755
            RVHT Y      TGRL+S  PNLQNIPI+T+ G+ IR+AFI+      L+SADYSQIEL
Sbjct: 674 GRVHTDYMQTVAATGRLSSTNPNLQNIPIRTEKGRLIRKAFIARDENYTLLSADYSQIEL 733

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+A +     + + F+N  DIH+  AA++F + +++V+ + R HAKT+NF IIYG+S F
Sbjct: 734 RIIAALCGEENMIKAFQNHEDIHKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVSAF 793

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+ Q  + R E+A+ I+ Y+  +P +  ++    +F R+NGYVETI GRR +  +INS 
Sbjct: 794 GLSNQTNLSRKESAELIEAYYQTYPKLKSFMTSQVDFARENGYVETISGRRRYLKDINSA 853

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            + +R   ER A+NAPIQGSAADI + AMI++HK L      +KMLLQ+HDELVF+V   
Sbjct: 854 NAIVRGGAERNAVNAPIQGSAADIIKIAMINIHKKLTSENWKSKMLLQVHDELVFDVHNS 913

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+     +I H ME A      + VPL V I +  NW E
Sbjct: 914 ELEKIQPMIKHEMENA----FKMAVPLDVEIGLGKNWLE 948


>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
 gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
          Length = 890

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 345/941 (36%), Positives = 533/941 (56%), Gaps = 67/941 (7%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           ++++  ++  +   AVIFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+
Sbjct: 1   MIRSMMRQFASDRMAVIFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGL 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    A + G  V I + DKD+ QLV     L +T+    +D E 
Sbjct: 61  PLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-- 225
           VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G LE++  N  +I   
Sbjct: 121 VIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAAL 180

Query: 226 ----QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
                K   + + E  + A LS +L  ++ DV +    + L+ +  +   L+++   L F
Sbjct: 181 GFRGSKTMAQKLEENRDNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAF 240

Query: 282 TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
              +  +               LD  T    GI         T  + ++ SS++   +  
Sbjct: 241 KSWLTEL---------------LDGGT----GIV--------TADEQAKASSVTASNAVS 273

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
           N+   P+    +         I+   Y  I+N +D  QW++KL+     +F   TD++D 
Sbjct: 274 NAAAIPESPAAQ---------IDRSQYQTILNEQDFNQWLEKLQQAELFAFDTETDSLDY 324

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             +  + ++ +  +         E  +I ++ H   D+  +      +++ LK   E+E 
Sbjct: 325 MVANLVGMSFAVAEG--------EAAYIPVA-HDYLDAP-QQLDRAWVIAQLKPLLEDES 374

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
             K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    
Sbjct: 375 KAKVGQNLKYDASVIARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISF 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDK 574
           ++I    K+ +  ++I   +  ++A E+++V L+L   + P  ++E   KL  VY  ++ 
Sbjct: 435 EQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLAQVYSEIEM 492

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P++ V+S++E TG+ ID  LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF
Sbjct: 493 PLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEQKAYELAGQSFNLSSPKQLQTILF 552

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN 
Sbjct: 553 EQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINP 611

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIE
Sbjct: 612 NTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIE 671

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+AH++    L   F    DIH   AAEI GV IE+VS + RR AK +NF +IYG+S 
Sbjct: 672 LRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSA 731

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S
Sbjct: 732 FGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITS 791

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVP 933
             +  R   ERAAINAP+QG+AADI ++AM+ V + ++ +     K+L+Q+HDELVFEV 
Sbjct: 792 RNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVE 851

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E  ++     +   ME A      L VPL       +NW++
Sbjct: 852 ESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQ 888


>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
 gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
          Length = 942

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 355/981 (36%), Positives = 542/981 (55%), Gaps = 59/981 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R     PV AI G  NML +L     K+  A + A +FD
Sbjct: 4   LLLVDGSSYLYRAFHAMPDL-RNSANEPVGAIQGVLNMLRRL----HKDYPAEYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IYP+YKANR  +P+ L  Q+  +    +A G P I   G EADD+I     
Sbjct: 59  AKGKTFRDDIYPEYKANRASMPDDLRSQIEPLFETIRAMGWPLIIEDGVEADDVIGALAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180
            AE++G    I + DKD+ QLV+    + +T+++      + +D+  V  K+GIPP  ++
Sbjct: 119 QAEQQGIKTIISTGDKDISQLVNEQITVVNTMRDAFRKTDDVLDVAGVENKFGIPPSLII 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GD+ DN+PG+  +G KTA   L+EYG L+NI+ NA  IK     EN+ +     
Sbjct: 179 DYLVLIGDTSDNVPGVEKVGPKTAVKWLKEYGTLDNIVANADSIK-GVVGENLRKALPWL 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF---TKLINRVATTYDCDAA 297
             +R+L+ +R DV I    + L+ +  +  +L +     EF    + ++ +       + 
Sbjct: 238 PTARELITIRCDVGIREHFDELVQQAPDKAKLAALFDHFEFRSWKRELDNMPDAVSQPSV 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            + P     +   +   A +T     +T K    ++    T  I+ +             
Sbjct: 298 ELAPAGTSGDLFGSPATAPQTNAGAVSTPKAEPKTTNHHYTPNISRQ------------- 344

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++   +  W+ KL       F   T ++D   ++ + ++ S     
Sbjct: 345 ----------YETILSEAVLDTWLAKLNQAELICFDTETTSLDPLTAQIVGMSFSVAAGT 394

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+ H   D+  +  L  E+L+  K   EN    K+G N+KYDK VL 
Sbjct: 395 G--------AYLPLT-HDYFDAPSQLPLA-EVLAKFKPLLENPTIKKVGQNLKYDKHVLA 444

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            +GI++ G   D +L SYVL+S R  H +  ++ + L     + +++       +  +++
Sbjct: 445 NHGIALNGIAHDTLLQSYVLESHRG-HGMDELSARHLGIEPISFEQVAGKGAKQVGFNQV 503

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +     E+A E++++ LQL   L P+++ + KL  +Y +++ P ++ +  +E  G+ ID 
Sbjct: 504 TIEVAAEYAAEDADITLQLHEALSPQVLQDDKLNFIYSQVEMPSMECLFTIERNGVLIDA 563

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L + S EI   L+ LE   ++L+G+ FNL SPKQL +ILF KL      KT +G   +
Sbjct: 564 NMLNRQSNEIGMKLMELEAKAFELAGQPFNLGSPKQLQEILFGKLGIKPIKKTPSGA-PS 622

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +D+ Q    D P+ K +LE+R L+K+KSTY D LP  IN  T RVHT Y+ A  +TGR
Sbjct: 623 TDEDVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPKMINAHTGRVHTNYNQAVAITGR 682

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIP++T  G++IR AFI+PP   ++SADYSQIELRI+AH++K   + Q F 
Sbjct: 683 LASSDPNLQNIPVRTAEGRRIREAFIAPPGSHIVSADYSQIELRIMAHLSKDAGMLQAFA 742

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N+ DIHR  AAEIFGV    V  + RR+AK INF +IYG+S F LA  L I RS A +YI
Sbjct: 743 NNEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIYGMSAFGLAQNLNIERSAAQNYI 802

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RYF R+PG+ +Y++ T+   ++ GYVET FGRR+   EINS     R   ERAAINAP+
Sbjct: 803 ERYFARYPGVRQYMQDTRELAKEKGYVETYFGRRLWVPEINSANGMRRAGAERAAINAPM 862

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ + AMI+V K L+D +L TK+++Q+HDELV EV + E+    Q +   M+   
Sbjct: 863 QGTAADLIKLAMIAVDKWLKDEQLNTKLIMQVHDELVLEVADSELELVKQKLPELMQSVA 922

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
                L VPL   + V +NW+
Sbjct: 923 ----KLDVPLLAEVGVGSNWE 939


>gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 921

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 345/989 (34%), Positives = 536/989 (54%), Gaps = 96/989 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y NL+ +     R   K     + E+ E
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLDKVATLPIR-GAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +   L+     LEF   I             
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDALMELYAELEFKSWIE------------ 287

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               ++ RD   +  Q  ++ + T  + +++   ++ LE+ Q  
Sbjct: 288 --------------------DLQRDAK-RAGQELTVEEPT--VEAKEAAYEVILEQTQ-- 322

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W++KL+     +F   ++  DA  ++ + ++ + +   +
Sbjct: 323 ------------------FDAWLKKLQATPLFAFVTQSNGTDAQRAQLVGLSFA-IQTHE 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476
                +   ++ +     +DS         +L  LK   E+   +K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDS---------VLKTLKPLLEDPGKIKVGQHAKFAINLLAN 414

Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++T    ++I      
Sbjct: 415 CAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V++++E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELEGVTQDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L+   L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M  A      L VPL V + + NNW E
Sbjct: 895 PHMSGAA----ELAVPLLVEVGIGNNWDE 919


>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
 gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
          Length = 916

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 353/976 (36%), Positives = 538/976 (55%), Gaps = 73/976 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS++YRA++A P L R  +  P  AI G  NML +L     K+  A + A +FD
Sbjct: 4   VLLVDGSSYLYRAYHALPDL-RNRNNEPTGAIHGVLNMLRRL----HKDYHADYSACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EIYP+YKA+RP +P  L  Q+  +    +A G P + I G EADD+I T   
Sbjct: 59  AKGKTFRDEIYPEYKAHRPSMPMELAVQIEPLHACIRAMGWPMLIIDGVEADDVIGTLAR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A +      I + DKD+ QLV     L +T+  E +D   V+ K+G+PPE+M+    L 
Sbjct: 119 QAVEADMRCIISTGDKDIAQLVDSHISLVNTMSNEILDEASVLAKFGVPPERMLDYLMLV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--KRRENILEYAETARLSR 244
           GD+ DN+PG+  +G KTA   L +YG+L+NI+ +A  IK          L++ +TAR   
Sbjct: 179 GDTSDNVPGVHKVGPKTAVKWLTQYGSLDNIIAHADEIKGAIGDNLRTALDWFDTAR--- 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L+ ++ DV + I +  L L+  +  +L    + L+    +  +                
Sbjct: 236 QLITIKCDVDLPIKITDLALQPQDTEQLARLYEQLDMRMSLREL---------------- 279

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                + +G A +       T+  +Q ++      K    Q+                  
Sbjct: 280 ----RQQRG-ASDPSQPGSATVSENQLAAGDGGNDKAVMGQSV----------------- 317

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  I    ++  W+ +L+T    S    T +++   +K + I           SF V
Sbjct: 318 --TYQTIFTDAELDDWLTRLDTAQLVSIDSETTSLNPMQAKLVGI-----------SFCV 364

Query: 425 ETIFID-LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           E+     L +        +       L  LK + E+    K+G N+KYDK V   + I +
Sbjct: 365 ESHHAAYLPLMHRYPGVPQQLSFDRALKKLKPWLESATKPKLGQNLKYDKHVFANHDIQL 424

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQ 539
            G   D +L SYVL+S R  H++ S+A + L   + +  ++       I  D+++     
Sbjct: 425 NGIAHDTLLQSYVLESHRP-HNMDSLALRHLDVKTISYDDVTGKGVKRIGFDEVAIDTAT 483

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A E++++  +L   L P +    +L H+Y  ++ P++ V+ ++E  G+ +D  LL++ 
Sbjct: 484 QYAAEDADITFRLHQALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQ 543

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+ + L +LE+  YD+SG+ FNL+SPKQ+ +ILF +LK P   KT TG   T    L+
Sbjct: 544 SHELGEKLHALEQQAYDISGQPFNLNSPKQIQEILFHQLKLPIVKKTPTGVPSTDEDVLQ 603

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q+   D P+ K +L +R LSK+KSTY D LP  +++ T RVHT YS A  +TGRLAS +P
Sbjct: 604 QLAL-DYPLPKLLLNYRSLSKLKSTYTDKLPLMMDRNTGRVHTNYSQAVAVTGRLASSDP 662

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T  G++IR AFI+P   ++ISADYSQIELRI+AHI++   L + F    DIH
Sbjct: 663 NLQNIPVRTSEGRRIREAFIAPAGYRIISADYSQIELRIMAHISQDEGLLKAFAAGEDIH 722

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AAEI G+ + +V  + RRHAK INF +IYG+S F LATQL I RS A  Y++RYF R
Sbjct: 723 SATAAEILGIPLNQVDQEQRRHAKVINFGLIYGMSEFGLATQLGIERSAARAYMERYFAR 782

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P +  Y+++T+   R+ GYVET+ GRR+   EIN+   + R   ERAAINAP+QG+AAD
Sbjct: 783 YPKVESYMQQTREKARRLGYVETVLGRRLWLPEINNANGNRRQGAERAAINAPMQGTAAD 842

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI+VH  L   KL +K+++Q+HDELV EVPE E+     +I  S+ K     + L
Sbjct: 843 IIKLAMIAVHSWLHKEKLHSKLIMQVHDELVLEVPENEVA----LIKSSLPKYMGDVLQL 898

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL + I V +NW++
Sbjct: 899 DVPLVIEIGVGDNWEQ 914


>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 932

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 360/994 (36%), Positives = 532/994 (53%), Gaps = 98/994 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A   L+   DG+P  A+ G  NML +L    R + +  + AV+FD
Sbjct: 9   LLLVDGSSYLYRAYHAMAQLTAP-DGVPTGALYGVLNMLRRL----RADYVHDYCAVVFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122
                FR+E++ DYKA RP +P+ L PQ   LP LVRL     G P + +   EADD+I 
Sbjct: 64  AKGKNFRHEMFADYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVVPQVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T      + G+ V I + DKD+ QLV+    L +T+  E +D + V  K+G+ P+++   
Sbjct: 120 TLAVQGGEAGWDVVISTGDKDMAQLVNERVTLVNTMSGETLDTDGVKAKFGVRPDQIRDY 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD +DN+PG+   G KTA   L+ Y  L  ++ +A  IK  K  EN+        L
Sbjct: 180 LALMGDKVDNVPGVEKCGPKTAVKWLEAYETLAGVMEHAGEIK-GKVGENLQAALSQLPL 238

Query: 243 SRKLVMLRTDV----PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY------ 292
           S  LV ++TDV     ++  LE L        +L +  K   F   +    +        
Sbjct: 239 SYDLVTIKTDVDLHAELSDGLESLRRTPPKWAQLAADFKRWGFKSWLKEAESRMHEAAES 298

Query: 293 ----DCDAANIEPVVLDINTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTP 347
                 D   I  + L++ + +    A   E +D       +QF++L D+ SK       
Sbjct: 299 DLFGSADVGEIAALALEMPSEKQPEKAAAPEKLDYQAVTTETQFAALLDKLSKA------ 352

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                                                E IG       T ++DA +++ +
Sbjct: 353 -------------------------------------ERIG---IDTETTSLDAMNAQLV 372

Query: 408 AIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
            I+I+         F+  E  +I L    S  +  +    ++ L  LK   EN    KIG
Sbjct: 373 GISIA---------FEAGEAAYIPLG--HSMTAAPQQLDLQDTLGRLKPHLENGSLKKIG 421

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK 522
            N+KYD+ V   YGI++RG   D ML SY+++S    H +  ++++WL     T + +  
Sbjct: 422 QNLKYDQHVFANYGIALRGIAGDAMLASYIVES-HLGHGLDELSERWLGLPTITYESLCG 480

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                I    ++  Q  E+A ++++  L+L   LR ++  EK L +Y  L+ P+  V+ +
Sbjct: 481 KGAKQISFADVAVEQAAEYAAQDADFALRLEAHLRAQMD-EKQLEMYLNLELPVAQVLFE 539

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G+ ID+  L   S+E+   LL LEE  +  +G+ FNL+SPKQL +ILF K+  P+ 
Sbjct: 540 MERNGVHIDRAELAAQSSELGAALLKLEEQAFQTAGQPFNLNSPKQLQEILFDKMGIPTK 599

Query: 643 A--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KT +G   T    LEQ+   D P+ K ILE R L+K+KSTY D LP  IN RT RVH
Sbjct: 600 GLKKTASGGISTNEAVLEQL-APDYPLPKIILENRSLAKLKSTYTDKLPEMINPRTGRVH 658

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T YS A  +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH
Sbjct: 659 TTYSQAVAITGRLASSNPNLQNIPIRTAEGRRVRRAFTAPAGSLIVSADYSQIELRIMAH 718

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  
Sbjct: 719 LSGDKTLMAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKS 778

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I    A ++I RYF R+PG+ EYI++TK      GYVET+FGRR++  +I +  ++ R
Sbjct: 779 LGIDNLSAKNFIDRYFARYPGVAEYIQRTKEEAAAQGYVETLFGRRLYLPDIRAKNANAR 838

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAINAP+QG+A+D+ +RAMI+V   L    L +K+++Q+HDELV EV E E+ T 
Sbjct: 839 AGAERAAINAPMQGTASDLIKRAMIAVSSRLHSDGLESKLIMQVHDELVLEVVENELETV 898

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +++   M +    ++N  VPL   + V  NW +
Sbjct: 899 KEMLPQVMAEVAQGRLN--VPLLAEVGVGGNWDD 930


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 344/1000 (34%), Positives = 557/1000 (55%), Gaps = 83/1000 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  LFL+D  + I+R +YA    P ++ K  G+  +AI GF N L+ +++  + +    H
Sbjct: 9   QKRLFLLDAYALIFRGYYALIKNPRVNSK--GMDTSAIMGFMNSLFDVIKREKPD----H 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    + R E+Y DYKANR + P+ +   +P ++   +A  +P IEI+G EADD+
Sbjct: 63  LAVAFDKGGSSDRVEMYEDYKANRDETPDAIKIAVPYIQSILKAMHVPCIEIEGVEADDL 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175
           I T +  AEKEG+ V +++ DKD  QLVS    +Y   +     + + I+ WGIP     
Sbjct: 123 IGTLSKQAEKEGYQVFMVTPDKDYAQLVSENIFMYKPAR-----MGNGIEIWGIPEVQKK 177

Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
                PE+++    + GD+ DNIPG+PG+G KTA   +++YG LE +L N  ++K  K +
Sbjct: 178 FEVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIKQYGGLEGLLENTDKLK-GKMK 236

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           E ++  AE  RLSRKL  +  D  +T   E+  L + +   +      LEF +L ++   
Sbjct: 237 EKVIANAELGRLSRKLATIMLDCDVTFNAENYELSEPDAEAVAEIFDDLEFRRLKDQFVK 296

Query: 291 TYDCDA-ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQF------SSLSDQTSKINS 343
            +  +A A++   V +  T +     IET   +       Q+      S+++D   + +S
Sbjct: 297 IFSGEAEASVGAAVSNTETAKK----IETASKKAAQAGAGQYNLFDANSTIADDVEEASS 352

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDTMDAF 402
            QT +                   Y  +  +   ++ ++Q L    S  F   T  ++  
Sbjct: 353 RQTIKS--------------KEHHYQSVATSGMGLKLFLQNLNKQTSVCFDTETTGLNPL 398

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
            ++ + IA S    K          ++  S +  +         ++++  L+ FFENE  
Sbjct: 399 TAELVGIAFSWDAGK--------GFYLPFSDNKEE--------AQQLIEELRPFFENEDI 442

Query: 463 LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----R 517
            K+G N+KYD  VLH+Y I +RG   D ML  Y+++     H++  +A+ +L+Y+     
Sbjct: 443 QKVGQNLKYDIKVLHKYDIEVRGPLFDTMLAHYLINPDMR-HNMDVLAETYLNYSPVSIE 501

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
             I K  K+   +  +      E+A+E++++ LQL      +L       +++ ++ P++
Sbjct: 502 TLIGKKGKNQKSMRDVPLEDQTEYAVEDADITLQLKEHFEKELGDANTQKLFDDIEIPLL 561

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V++ ME+ GI +D+  L  ++ +++ ++ +LE +IY  +GE+FN+ SPKQLG+ILF KL
Sbjct: 562 RVLAAMELEGINLDKAFLNNLAEDLNNDIATLEASIYKEAGEEFNIGSPKQLGEILFDKL 621

Query: 638 KF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           K      KT+TGQ+ +TA+D+      D+ II+N+L++R L+K+KSTY D+LP  + +  
Sbjct: 622 KLVEKPKKTRTGQY-STAEDVLSYLAADHTIIQNVLDYRGLAKLKSTYVDALPEQV-EED 679

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIE 754
            RVHT Y      TGRL+S  PNLQNIPI+T+ G+++R+AF+ P  +   L++ADYSQIE
Sbjct: 680 GRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFV-PKNEDYVLLAADYSQIE 738

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+A +++   + + F+N  DIH   AA++F V I +V+ + R +AKT+NF IIYG+S 
Sbjct: 739 LRIIAALSEEDTMIEAFKNGEDIHASTAAKVFNVPINEVTREQRSNAKTVNFGIIYGVSA 798

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F L+ Q  + RSE+ D I  Y+  +P +  Y+    +  R++GYV T+ GRR +  +INS
Sbjct: 799 FGLSNQTDLTRSESKDLIDTYYKTYPKLRNYMSNLVDDAREDGYVSTVLGRRRYLKDINS 858

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               +R   ER A+NAPIQGSAADI + AMI++HK L +    TKMLLQ+HDELVF+VP+
Sbjct: 859 SNGVVRGAAERNAVNAPIQGSAADIIKVAMINIHKKLAEGNFKTKMLLQVHDELVFDVPK 918

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E+     ++   ME A      L VPL V + V N+W E
Sbjct: 919 NELEDIKTLVKTEMESAY----TLSVPLDVEVGVGNDWLE 954


>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
 gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
          Length = 952

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 356/983 (36%), Positives = 540/983 (54%), Gaps = 76/983 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A   LS   DG P  A+ G  NML +L    R + +  + AV+FD
Sbjct: 29  LLLVDGSSYLYRAYHAMAQLSAP-DGAPTGALYGVLNMLRRL----RADYVHDYCAVVFD 83

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122
                FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   EADD+I 
Sbjct: 84  AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 139

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++   
Sbjct: 140 TLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 199

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A  +K  K  EN+        L
Sbjct: 200 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVK-GKVGENLQAALPQLPL 258

Query: 243 SRKLVMLRTDV----PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           S  LV ++TDV     ++  LE L        +L+   K   F   +   A +   +A N
Sbjct: 259 SYDLVTIKTDVDLHAELSDGLESLRRTSPKWAQLVVDFKRWGFRTWLKE-AESRMHEAQN 317

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            + +    +  E   +A+ET+ ++   +  +                 P+KL        
Sbjct: 318 TD-LFGSEHIGEQAALAMETQPEKQPELAPA-----------------PEKL-------- 351

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +         + KL    +      T ++DA ++  + I+I+      
Sbjct: 352 --------DYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNAALVGISIA------ 397

Query: 419 DTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ V  
Sbjct: 398 ---FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFA 452

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    +
Sbjct: 453 NYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGFADV 511

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+ 
Sbjct: 512 AIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDRA 570

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWK 651
            L + SAE+   L+ LE+  Y ++G+ FNL+SPKQL +ILF K+  P+    KT  G   
Sbjct: 571 ELARQSAELGAELMKLEQEAYAVAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIS 630

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +TG
Sbjct: 631 TNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAITG 689

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   F
Sbjct: 690 RLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 749

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A  +
Sbjct: 750 QNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 809

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINAP
Sbjct: 810 IDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAP 869

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+A+D+ +RAMI V + L    L +K+++Q+HDELV EVPE E+    + +   M K 
Sbjct: 870 MQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQIMAKV 929

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               +N  VPL   + V  NW+E
Sbjct: 930 DEGMLN--VPLVAEVGVGMNWEE 950


>gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020]
          Length = 921

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 351/989 (35%), Positives = 532/989 (53%), Gaps = 96/989 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+FD
Sbjct: 6   LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y  LE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKKLYERLETVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +    D   A 
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E + ++  T E K  A E        ++ SQF +                         
Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W++KL      +F   ++  DA  ++ + ++ + +   +
Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQTHE 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLHDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKTQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M  A      L VPL V + V NNW E
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 921

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 349/989 (35%), Positives = 532/989 (53%), Gaps = 96/989 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+FD
Sbjct: 6   LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y  LE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +    D   A 
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E + ++  T E K  A E        ++ SQF +                         
Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W++KL      +F   ++  DA  ++ + ++ + +   +
Sbjct: 326 ---------------------WLKKLNAAPLFTFVTQSNGTDAQRAQLVGLSFA-IQTHE 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPGKTKVGQHAKFAINLLAN 414

Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M  A      L VPL V + V NNW E
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145]
 gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145]
          Length = 924

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 340/987 (34%), Positives = 551/987 (55%), Gaps = 87/987 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS+++RAF+A P L+    G P  A+ G  NML  LL+  +     SH AV
Sbjct: 7   ENPFILVDGSSYLFRAFHAPPHLTNSA-GEPTGAVYGVVNMLRSLLKRYKP----SHMAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++IY +YKA+RP +P+ L  Q+  +    +A G+P + ++G EADD+I T
Sbjct: 62  VFDAKGKTFRSDIYDEYKAHRPPMPDDLRTQIEPLHAIVKAMGLPLLCVEGVEADDVIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G    I + DKD+ QLV+    L +T+ +  +D   VI+K+G+ P +++   
Sbjct: 122 LAKQAGDKGRFTLISTGDKDMAQLVNDHVMLINTMTDTLLDESGVIEKFGVKPNQIIDYL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+P +G KTA  +LQ   +++ I  + + + +      K   + + E+ 
Sbjct: 182 ALMGDSSDNIPGLPKVGEKTAQAMLQGIPSIDKIYEDINAVTELGFRGAKSMPKKLEEFK 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +   +SR+L  ++ DV +    + L +E  +  +L +    +EF + +N +  T      
Sbjct: 242 DQLLMSRELATIKCDVELECAPDALTIEPADTDQLQTLYGKMEFRRWLNELLET------ 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G A                      T +   E +P +      ++
Sbjct: 296 ---------------GAA----------------------TDQALGEASPAE------EQ 312

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             Q+ +N D+Y  + N +++  ++++L++    +F   T +++   ++ + ++ S  +  
Sbjct: 313 SEQFSVNRDAYKTLFNEEEVSDYIEQLKSAEVIAFDTETTSLNYMEAQLVGVSFSIAEG- 371

Query: 418 DDTSFKVETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  E ++I ++     D  G  K      +L  LK   E+    K+G N+KYD  +
Sbjct: 372 -------EAVYIPVA----HDYVGVEKQVDRDWLLKVLKPLLEDSSIAKVGQNLKYDAHI 420

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L RYGI +RG + D ML SYV +S  S HD+ +++ ++L++     +EI       +  +
Sbjct: 421 LRRYGIKLRGIKNDTMLASYVFNSVGSRHDMDTLSLQYLNHKPIKFEEIAGKGAKQLTFN 480

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +I  +Q   +A E++++ L+L  +L  K+    E+L  V   ++ P++ +++ ME  G++
Sbjct: 481 QIELAQAAPYAAEDADITLRLHHILWDKVHQTGEQLASVLTDIEVPLVSILTDMEEYGVK 540

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D ++L + S EI+  L  LE+  ++++GE+FNL SPKQL  ILF KL+ P   KT  G 
Sbjct: 541 VDAEMLGKQSEEIANKLDELEQKAFEIAGEEFNLGSPKQLQQILFEKLELPVIKKTPKGA 600

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +TA+++ Q    D P+   IL+ R L+K+KSTY D LP  IN  T RVHT Y  A   
Sbjct: 601 -PSTAEEVLQELAHDYPLPDVILQHRSLAKLKSTYTDKLPRMINPDTGRVHTSYQQAVAA 659

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S EPNLQNIPI+T  G+++R+AF++     +++ DYSQIELRI+AH+++   L +
Sbjct: 660 TGRLSSTEPNLQNIPIRTPEGRRVRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDASLLR 719

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  A+E+FG ++E+V+ + RR AK +NF +IYG+S F L+ QL IPR EA 
Sbjct: 720 AFAQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNFGLIYGMSAFGLSRQLDIPRHEAQ 779

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+ +YF RFPG+ EY+E T+   ++ GYV T+FGRR+   EI +   + R   ERAAIN
Sbjct: 780 AYMDKYFERFPGVLEYMENTRETAKKQGYVSTLFGRRLPLPEIKASNGARRKAAERAAIN 839

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLAT--KMLLQIHDELVFEVPEEEITTASQIIVHS 947
           AP+QG+AADI +RAMI V   +++    +  +ML+Q+HDELVFE+  E   + ++ +   
Sbjct: 840 APMQGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQVHDELVFEIRTEHAESYAKALADV 899

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M +A     +L VPL        NW E
Sbjct: 900 MGEAA----DLDVPLLAEYGFGANWDE 922


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 363/988 (36%), Positives = 535/988 (54%), Gaps = 92/988 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL  SR +   SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFRN++Y +YKA+RP +P+ L  Q+ PL R+  +A G+P I I G EADD+I T
Sbjct: 62  FDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRI-IRALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I++ A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      L  +  +   LI     +EF + +  V      D  
Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWLAEV-----LDNK 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V     TTE      + E     TI+T                             
Sbjct: 296 APATVAAKAETTET-----QEESAPSVTIETQ---------------------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+    + +W+ KL+     +    T ++D   ++ + +        
Sbjct: 323 ----------YDTILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGL-------- 364

Query: 418 DDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYD 472
              SF VE     ++ L+     D  G    L K+  L  L+   E+    K+G N+KYD
Sbjct: 365 ---SFAVEAGKAAYLPLA----HDYVGAPQQLDKQTALEKLRPLLEDAKIKKVGQNLKYD 417

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
             VL   GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I       +
Sbjct: 418 ISVLANAGIKLQGVVFDTMLESYVFNSIASRHDMDGLALKYLGHKNIAFEDIAGKGAKQL 477

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++I       +A E++++ L+L   L P+L  E +L  V+  ++ P+I ++S +E  G
Sbjct: 478 TFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQG 537

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  LL Q S E+++ +  LE   YD++GEKFNLSSPKQL  + F KL +P   KT  
Sbjct: 538 VFIDSMLLGQQSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPK 597

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + L ++   D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+
Sbjct: 598 GAPSTAEEVLVELAL-DFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQAN 656

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L
Sbjct: 657 AATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGL 716

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F    DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+E
Sbjct: 717 LKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNE 776

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAA
Sbjct: 777 AQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAA 836

Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMIS+   ++ D +    M++Q+HDELVFEV  ++  T    +  
Sbjct: 837 INAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCE 896

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M KA     NL V L     + +NW +
Sbjct: 897 LMAKAA----NLDVELLAEAGIGDNWDQ 920


>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
 gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
          Length = 905

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 347/973 (35%), Positives = 540/973 (55%), Gaps = 79/973 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+ + + E    + A IFD
Sbjct: 5   LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDHKAE----YAACIFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YP+YK++RP +PE L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 60  ARGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHSAVRALGWPVLAIEGVEADDVIGTLAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A +      + + DKDL QLV+    L +T+  E +D   V+ K+G+PP+++V    L 
Sbjct: 120 RAAEHDVYTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEAGVVNKFGVPPDRIVDYLMLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTA   L E+G+++ ++  A  IK      N+ E      L+R+L
Sbjct: 180 GDAVDNVPGVTKVGPKTAVKWLTEFGSIDKLVEGAEDIKGVAG-SNLREAIPNFPLTRQL 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           + ++                                         YDCD A     V D+
Sbjct: 239 LTVK-----------------------------------------YDCDLAGHVDAVDDL 257

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
            T   +  A  TE+      +T     L D T   ++E+ P         +    P+  D
Sbjct: 258 -TPRPRDEATLTELYERYGFRTW----LRDLTG--DAERVPAG-DARVAHEAPAAPVELD 309

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  + +      W++KL+     +    T ++D   ++ + ++++        S  V  
Sbjct: 310 -YQILSDWAAFDAWMEKLKDAPLVAVDTETTSLDEMQARMVGMSLAV-------SPGV-A 360

Query: 427 IFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
            +I ++ H   D+  +  L K E+L+ LK + E+    K+ H+ KYD  V    GI + G
Sbjct: 361 CYIPVA-HRGPDNAPQ--LPKAEVLARLKPWLEDATRAKLLHHAKYDAHVFANEGIKLAG 417

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541
             ED ML +YVL+S R    +  +AQ++L     + +++       I  D+++  +   +
Sbjct: 418 ITEDTMLQAYVLESHRGV-GLNDLAQRYLGRSGVSYEDLCGKGAKQIGFDEVAVDKAGHY 476

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E+S+  LQL  +LRP +  ++ L+    L+  + +V++ +E  G+++D   L + S +
Sbjct: 477 AAEDSDFTLQLHQVLRPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQSHK 536

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + + +L LE+  Y+L+G+ FNL+SPKQLG+ILF +++ P   KT +G   T  + L ++ 
Sbjct: 537 LGQEMLQLEQKAYELAGQPFNLNSPKQLGEILFGRMQLPVVRKTASGAPSTDEEVLSKL- 595

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ + +LE+R LSK+KSTY D LP  IN  T RVHT YS A+ +TGRLAS +PNLQ
Sbjct: 596 AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPNTGRVHTHYSQAAVITGRLASSDPNLQ 655

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T+ G+++R AFI+     L+SADYSQIELRI+AH++    L + FE   DIHR  
Sbjct: 656 NIPVRTEAGRRVREAFIAE-QGMLLSADYSQIELRIMAHVSDDANLQRAFEAGEDIHRAT 714

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+E+FGV++E VS + RR AK INF +IYG+  F LA+ L I R  A  YI RYF R+PG
Sbjct: 715 ASEVFGVSLEDVSTEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARYPG 774

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y++ T+   R+ GYVET+FGRR+   EI       R   ERAAINAP+QG+AAD+ +
Sbjct: 775 VAMYMDDTRRRAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQGTAADLIK 834

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V   LE  KL T+M++Q+HDELV E P+ E+    +++  ++ +       LRVP
Sbjct: 835 MAMIAVQDWLEAEKLQTRMIMQVHDELVLEAPDAEL----ELVKEALPRLMCNVATLRVP 890

Query: 962 LKVNIKVSNNWQE 974
           L   + +  NW++
Sbjct: 891 LVAEVGMGKNWEQ 903


>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
 gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
          Length = 930

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 358/986 (36%), Positives = 543/986 (55%), Gaps = 82/986 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +  V+FD
Sbjct: 7   LLLVDGSSYLYRAYHAMAQLTAP-DGAPTGALYGVLNMLRRL----RSDYVHDYCVVVFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122
                FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   EADD+I 
Sbjct: 62  AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++   
Sbjct: 118 TLAKMASEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 177

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+        L
Sbjct: 178 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLQAALPQLPL 236

Query: 243 SRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDCDA 296
           S  LV ++TDV +     H  L D         P+      A++F +   R   T+  +A
Sbjct: 237 SYDLVTIKTDVDL-----HTELSDGLESLRRTSPKWSQL--AVDFKRWGFR---TWLKEA 286

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL-ERL 355
            +      D +   +  I  +  +D +T+                 SE+ P+K    E+L
Sbjct: 287 ESRMHEAADGDLFGSDTIGEQAALDMETS-----------------SERLPEKAVAPEKL 329

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +         + KL    +      T ++DA  +  + I+I+   
Sbjct: 330 -----------DYQAVTTEAQFAALLDKLSQADTIGIDTETTSLDAMDASLVGISIA--- 375

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 376 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPVLKKIGQNLKYDQH 427

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 428 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 486

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 487 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 545

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  + + FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 546 DRAELARQSAELGAELMKLEQEAYAAASQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 606 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 665 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 725 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 785 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V + L    L +K+++Q+HDELV EVPE E+    + +   M
Sbjct: 845 NAPMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQIM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  + +  L+VPL   + V  NW+E
Sbjct: 905 AK--VDEGMLKVPLVAEVGVGENWEE 928


>gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 921

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 348/989 (35%), Positives = 532/989 (53%), Gaps = 96/989 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+FD
Sbjct: 6   LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y  LE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +    D   A 
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E + ++  T E K  A E        ++ SQF +                         
Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W++KL      +F   ++  DA  ++ + ++ + +   +
Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQTHE 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV ++ V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELDNVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M  A      L VPL V + V NNW E
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
 gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
          Length = 944

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 351/977 (35%), Positives = 536/977 (54%), Gaps = 55/977 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R + G P +   G    +  ++Q  RK+  A + A +FD
Sbjct: 8   LLLVDGSSYLYRAFHAMPDL-RANPGDPTSPATGAIRGMINMMQKLRKDVRADYAACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +YP YKA R  +P+ L  Q+  +    +  G   +++ G EADD+I T   
Sbjct: 67  AKGPTFRDALYPQYKAQRSPMPDDLRSQVEPIHEVVRLLGWKVLDVPGVEADDVIGTLAC 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +A K+G  V I S DKDL QLV     + DT+ + + D+  V  ++G+PP  MV  QAL 
Sbjct: 127 LASKQGIEVIISSGDKDLSQLVDENITVIDTMNDRRRDLAGVEAEFGVPPRLMVDYQALV 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+P +G KTA   L EYG+L+ ++  A  IK     +N+    +     R+L
Sbjct: 187 GDAVDNVPGVPKVGPKTAVKWLLEYGSLDALVARAGEIKGVVG-DNLRLSLDWLPKGREL 245

Query: 247 VMLRTDVPI-----TIP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           + ++ D  +      +P LE + +       L +F +   F  L+ ++    D ++A  E
Sbjct: 246 LTIKKDCDLIGYIDGLPALESIAIGGQQTDALKAFYEKYGFKGLVRQI----DTESAPPE 301

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                I   E +       +    +  +S    L D+ S       P      R   L  
Sbjct: 302 L----IGGPEGRHAKSPGSV---GSAGSSASPGLFDEPS------LPDAPLAGRASNLK- 347

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I   + +  W+ K+E     +    T ++D   ++ + I+ S        
Sbjct: 348 -------YDTIFTWELLDSWLAKIEAAELVAVDTETTSLDEMLAQIVGISFSVTPG---- 396

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E  +I L+ H   D+  +     E+L+ LK + EN    K+G ++KYD+ V   +G
Sbjct: 397 ----EAAYIPLT-HDYPDAPAQ-LPRDEVLARLKPWLENPAIAKLGQHVKYDRHVFANHG 450

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           I ++G+  D ML SYVL+     H +AS+A++ +  +    +++       I  +++  +
Sbjct: 451 IEVQGYAHDTMLQSYVLEV-HKPHGLASLAERHVGRSGINYEDLCGKGVHQIKFNQVDIA 509

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +  E++ E+S+  L +  +L P++   +KL  VYE L+    + + ++E  G+ ID   L
Sbjct: 510 KAAEYSCEDSDQTLDVHRVLWPQIEANDKLRFVYE-LEMKSSETLYRIERNGVLIDAPTL 568

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            + S E+   ++ LE   ++L+G+ FNL SPKQ+G+I FTKL  P   KT +G   T  +
Sbjct: 569 AKQSGELGARIVQLEAEAHELAGQPFNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEE 628

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+   ILE R LSK+K TY D L    + RT RVHT Y+ A  +TGRL+S
Sbjct: 629 VLEKL-AEDYPLPAKILEHRGLSKLKGTYTDKLAQLAHPRTGRVHTHYAQAVAVTGRLSS 687

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP+KT  G+++R AF++P    + SADYSQIELRI+AH+++   L + F   L
Sbjct: 688 NDPNLQNIPVKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHLSEDEALLRAFTEGL 747

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR  AAE+FGV +++VS + RR+AK INF +IYG+S F LA  L I    AA YI RY
Sbjct: 748 DVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIETKAAAAYIDRY 807

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+  Y+++T+   +  GYVET+FGRR++  EINSP    R   ERAAINAP+QG+
Sbjct: 808 FQRYPGVKHYMDETRLSAKSKGYVETVFGRRLYLPEINSPNGPRRGGAERAAINAPMQGT 867

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + +M+ V + L+  K ATKM++Q+HDELVFEVPE E+      I   M       
Sbjct: 868 AADLIKLSMVKVQEVLDAEKRATKMIMQVHDELVFEVPEAEVEWVRVEIPRIMAGVA--- 924

Query: 956 INLRVPLKVNIKVSNNW 972
            +LRVPL   I V  NW
Sbjct: 925 -DLRVPLLAEIGVGPNW 940


>gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
 gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
          Length = 932

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 338/981 (34%), Positives = 548/981 (55%), Gaps = 72/981 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+D  S +++ ++A P ++    G P NA+ GF   +  +L+  + +    +     D
Sbjct: 5   LYLIDTFSLLFQVYHAIPPMTGPS-GQPTNAVFGFTRDILMILKQKKPD----YLLCALD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R++ YP+YK  R ++PE ++PQLP++    +AFGIPA++  G+EADD+IAT   
Sbjct: 60  SEGPGLRSDWYPEYKIQRTEMPEDMVPQLPMLTEVIEAFGIPAVKHAGWEADDVIATLAR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE  G  V I+S+DKD  QL+S T  +++  K E      + K WG+ P++++  Q+L 
Sbjct: 120 QAEAAGLQVNIVSSDKDCRQLLSETVRMFNCRKGEYFGPPELEKTWGVRPDQVIDFQSLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG+P +G K AA LL+++G+L+++L NA +   KK REN++E+A+ AR+S++L
Sbjct: 180 GDSVDNVPGVPLVGPKKAAALLEQFGDLDSVLANADKAPGKKLRENLVEFADQARVSKRL 239

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L TD+P+   LE                            A   + D   ++ + LD 
Sbjct: 240 VTLNTDLPLNFDLES---------------------------ARVGNIDVGKLQQLFLDY 272

Query: 307 NTTENKGIAIETEIDRDTTI----KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
              + +      E+D D T+    ++ Q S     TS   S+   Q      +++ +  P
Sbjct: 273 GFRKFRDDL--HELDGDLTVNIPMRSGQRSLFDSPTSNTGSKAGNQT-DTPAVEESTPAP 329

Query: 363 INNDSYTKIVNTKD-----IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
              D    I+   D     +  W++  E I      + T ++ A  +  +  A++    K
Sbjct: 330 FQTDRDWSIIRETDELQALVDGWMKDCEEI---YIDLETTSVTAMEADIVGWAVAA---K 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              +F +            +   G+ T+  +E+L   +   EN        NIKYD LV 
Sbjct: 384 PGEAFYIPV----------RGPAGQQTMDNQEVLDIFRPLLENPRIAISNQNIKYDLLVW 433

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            R+GI ++    D M+  Y+LD+G  SH ++S+A ++L +      E++ + K+   +D+
Sbjct: 434 KRHGIELQKIGMDPMVGHYLLDAGARSHGLSSLADEFLKHRMIPISELIGTGKNQKRMDE 493

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I   QV E+A E+++  LQ+  ++R KL  ++L ++Y+ +++P+I V+++ME  GI++D 
Sbjct: 494 IDIDQVAEYASEDADAALQIADIIRDKLHEQELWNLYQDVERPLIGVLAEMEFAGIRVDD 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L + S  + + +  L E +  ++   FN  SPKQL ++LF ++  P   +TKTG   +
Sbjct: 554 EELFRQSELVGRRVEELLEELEGMADRPFNPDSPKQLREVLFDEIGLPVQKRTKTG--PS 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T Q + +     +P+   I+E+RQL+K+K TY DSLP  IN++T R+H  ++     TGR
Sbjct: 612 TDQSVLEKLAPLHPLPAKIIEYRQLAKLKGTYLDSLPKLINQQTGRIHASFNQVVAATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S +PNLQNIPI+T  G+++R+AFI   P  +L+  DYSQIELR+LAH +    L + F
Sbjct: 672 LSSSDPNLQNIPIRTPEGRQVRKAFIPGEPGWELLCCDYSQIELRVLAHFSGDAALQEAF 731

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++  DIH  VAAE+F V+   V   MRR AK +NF +IYG SP+ LA  L IP+ +AA++
Sbjct: 732 QSGKDIHTAVAAEVFEVDEANVDSDMRRVAKAVNFGVIYGQSPYGLAAALNIPQEQAAEF 791

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R+PG+ ++IE+T     ++GY  T+ GRR     I +     RN+ ER AIN  
Sbjct: 792 IDDYFMRYPGVSQFIEETLEQCARSGYAYTMLGRRRPITGIKNTGGRNRNMPERTAINTV 851

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AM++VH+ L    L+ +MLLQIHDELVFE P EE+    +++   M  A
Sbjct: 852 IQGSAADLIKLAMLNVHRELATSGLSARMLLQIHDELVFETPVEELEPLRELVHREMVNA 911

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
                 L VPL V++K   NW
Sbjct: 912 H----PLSVPLVVDMKHGENW 928


>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
 gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
          Length = 918

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 354/978 (36%), Positives = 540/978 (55%), Gaps = 76/978 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL  SR     SH AV+
Sbjct: 7   NPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYSP--SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+   A G+P I I G EADD+I T
Sbjct: 62  FDAKGKTFRNDMYGEYKAQRPPMPDDLRNQIEPLHRI-IHAMGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A KEG A  I + DKD+ QLV+    L +T+ +  +  E V  K+G+ P++++   
Sbjct: 121 IALQASKEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVKTKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD  DNIPG+PG+G KTA  +L   G++ENIL +   + +   R +           
Sbjct: 181 ALMGDKSDNIPGLPGVGEKTALAMLLGMGSVENILADPQSVVEVGFRGSK---------- 230

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                       T+P +  I+E+ +  +L     + E   +   V    D     ++P  
Sbjct: 231 ------------TMPAK--IIENADMLKL-----SYELATIKTDVELAQDWHQMTVKPQ- 270

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK-LFLERLQKLSQYP 362
                            DRD  IK+          +++   + P+  +  +  +++   P
Sbjct: 271 -----------------DRDELIKSFGEMEFKRWLAEVLDNKQPRGTISQDSEEEVIVSP 313

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  I+  + + +W++KL +    +    T +++   ++ + ++ +T +       
Sbjct: 314 TIEAEYETILTMEALDKWIEKLNSAELIAIDTETTSLNYMEAELVGLSFAT-EAGKAAYL 372

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +   ++D  +   + S          L  L+   E +   K+G N+KYD  +L   GIS
Sbjct: 373 PLAHDYLDAPLQIDKASA---------LEKLRPILEGDTPQKVGQNLKYDMSILANAGIS 423

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           ++G   D ML SYV +S  S HD+  +A K+L +   + +E+       +  +++     
Sbjct: 424 LKGIRFDTMLESYVFNSIASRHDMDGLALKYLGHKNISFEEVAGKGAKQLTFNQVHLDIA 483

Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L   L P+L  E +L  V+  L+ P+I V+S +E  G+ ID  LL Q
Sbjct: 484 GPYAAEDADITLRLHQHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSMLLSQ 543

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++K L  LE   Y+++ EKFNL+SPKQL  + F KL +P   KT  G   +TA+D+
Sbjct: 544 QSGELAKKLDDLENKAYEIAEEKFNLASPKQLQTLFFEKLGYPIKKKTPKGA-PSTAEDV 602

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                 D P+ K ILE R L+K+KSTY D LP  +N  T RVHT Y  A+  TGRL+S E
Sbjct: 603 LIELALDYPLPKVILEHRSLAKLKSTYTDKLPLMVNATTGRVHTSYHQANAATGRLSSSE 662

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L   F    DI
Sbjct: 663 PNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLTAFAEGKDI 722

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H+  AAE+FGV+ E+V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI  YF 
Sbjct: 723 HKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEAQKYIDTYFA 782

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ +Y+E+T+    + GYV T+FGRR++  EIN   +  R   ERAAINAP+QG+AA
Sbjct: 783 RYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEINDRNAMRRQAAERAAINAPMQGTAA 842

Query: 898 DITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI ++AMI++H+ + +D +    +++Q+HDELVFEV E +  T    +   M +A     
Sbjct: 843 DIIKKAMIAIHQWINQDTQGEITLIMQVHDELVFEVDEAQAETLKTKVCDLMAQAA---- 898

Query: 957 NLRVPLKVNIKVSNNWQE 974
           +L V L     + +NW E
Sbjct: 899 SLDVTLLAEAGIGDNWDE 916


>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
 gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
          Length = 917

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 359/977 (36%), Positives = 527/977 (53%), Gaps = 82/977 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVRAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++ DYKANRP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLFVDYKANRPSMPPDLALQIEPIHEAVRALGWPLLMIEGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE  G  V I + DKDL QLV+    L +T+  E +D E VI K+G+PPE++V   +L 
Sbjct: 127 AAEARGMKVVISTGDKDLAQLVTSHVTLVNTMTNELLDREGVIAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y  L+ I+ +A+ IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYETLDGIVEHAAEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRTDVPITIPLEHLILEDCNGPR----LISFLKALEFTKLINRVATTYDCDAANIEPV 302
           V + T   +   +E +      G      L+   +   F      +    +  AA   P 
Sbjct: 246 VTVETACELKPQVESIEASLATGAESRAALLPIFETYGFKTWRRELDAMPEDGAAAAAPE 305

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            +D        +    EI+R+                             E +Q  +Q+ 
Sbjct: 306 GIDP-------VPAAAEIERN----------------------------YETVQTWAQF- 329

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                            W+ K++     SF   T ++D   ++ + +++ T         
Sbjct: 330 ---------------DAWLAKIDAAALTSFDTETTSLDPMVAQIVGLSLCTEPGS----- 369

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                ++ ++ H   D+  +     E+L+ LK + EN    K+G ++KYD  VL  Y I+
Sbjct: 370 ---AAYVPVA-HRGPDAP-EQLPRDEVLAKLKPWLENPARKKVGQHLKYDAQVLANYDIA 424

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           + G E D +L SYVL+S R +HD+ S+A + L       +++       I  D+++    
Sbjct: 425 LNGVEHDTLLESYVLESHR-THDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVALDVA 483

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ LQL  ++ P++  E  L  VY  ++ P+  V+ +ME TG+ ID   L+ 
Sbjct: 484 AAYAAEDADITLQLHRVMYPQVEREAGLKRVYTEIELPVSFVLRKMERTGVLIDSGRLEA 543

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L
Sbjct: 544 QSREIAVRLVELEREAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVL 603

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           +++   D P+ K +LE R LSK+KSTY D LP  IN  T RVHT Y+ A  +TGRLAS +
Sbjct: 604 QKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMINASTGRVHTNYAQAVAVTGRLASND 662

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++T  G++IR AFI+ P  K++SADYSQIELRI+AHI+    L + F    DI
Sbjct: 663 PNLQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISGDESLLRAFSQGEDI 722

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FGV   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF 
Sbjct: 723 HRATAAEVFGVTPLEVSTDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFA 782

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+  Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AA
Sbjct: 783 RYPGVANYMETTRASAKAQGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAA 842

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + +MI+V   LE   L ++M++Q+HDELV EVP+ E+    + +   M         
Sbjct: 843 DLIKLSMIAVDGWLERDGLRSRMIMQVHDELVLEVPDAELALVREKLPEMMSGVA----K 898

Query: 958 LRVPLKVNIKVSNNWQE 974
           L+VPL   +    NW+E
Sbjct: 899 LKVPLVAEVGAGTNWEE 915


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 358/988 (36%), Positives = 558/988 (56%), Gaps = 91/988 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  G+  +AI GF N L  +L    K    +H AV
Sbjct: 3   LFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KRENPTHIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD+I T
Sbjct: 57  AFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179
            +  AEKEGF V +++ DKD  QLVS    +Y        E I +  V+ K+G+   E++
Sbjct: 117 VSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIIGVPEVLNKYGLTSTEQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237
           + L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K  QKK+ E   E A
Sbjct: 177 IDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE---ENA 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  R S+ L  ++TDVPI       + E  N  RL      LEF   IN++++     AA
Sbjct: 234 EQIRFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE-PVKAA 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL----E 353
              PV  D+        AI T      + +  + S L+D  S      TP   +L    E
Sbjct: 293 PKGPVQGDL-------FAIFT----PESTEEPEKSILTDLKS------TPHNYYLTDTEE 335

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           +   L+++ +  + +                      +F   TD +D   +  + ++ + 
Sbjct: 336 KQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLVGMSFAV 373

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         E  ++ +  ++ + +        +++       +N   LKIG NIK+D 
Sbjct: 374 KEN--------EAWYVPVPANSVEAA--------KVVERFSPALQNPKSLKIGQNIKFDI 417

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           LVL +Y + + G   D M+  Y+L+     H +  +A+ +L Y     +E++  + K+ +
Sbjct: 418 LVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQL 476

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +   Q+ E+A E++++ L+L     P+L  E L  ++  ++ P+I V+++ME TG+
Sbjct: 477 SMRNVPVEQIAEYAAEDADITLKLKNYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGV 536

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D   L+Q S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK    AK TKT
Sbjct: 537 TLDTVALRQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKT 596

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T+   LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A 
Sbjct: 597 GGYSTSEDVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV 655

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITP 766
           T TGRL+S  PNLQNIP++ DLG++IR+AFI   T  L  SADYSQIELRI+AH++    
Sbjct: 656 TSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F++  DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F LA +L IPRS
Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRS 775

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           E+ + I  YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER 
Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERN 835

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM+ +++  E+  L +KM+LQ+HDEL F V +EE     +I++ 
Sbjct: 836 AINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEEVKKIVLE 895

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME      + L+VPL  +     NW E
Sbjct: 896 EMENV----MKLQVPLIADCGEGENWLE 919


>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
 gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
          Length = 935

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 356/991 (35%), Positives = 542/991 (54%), Gaps = 86/991 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E+Y +YKANRP +P+ +  Q+  +  +  A G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D++ V +K+G+ PE+++   AL 
Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVDGVKEKFGVAPEQIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA-ALLLQEYGNLENI-----LINASRIKQKKRRENILE-YAET 239
           GDS DNIPG+PGIG KTA  LL+   G L  +     ++    I+  K     LE + E 
Sbjct: 181 GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEM 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +L  ++ DVP+ I L+ L +   +  +L      LEF   +N             
Sbjct: 241 AFLSYQLATIKVDVPLDIGLDDLQMGPEDPAKLYELYTLLEFKSWLN------------- 287

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK-LFLERLQKL 358
                              ++DRD   K  + S+         +E  P   LF    ++ 
Sbjct: 288 -------------------DLDRDA--KRQELSA--------AAEPVPAGDLFSAPAEEE 318

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +       +Y  I++      W++KL+     +F   T  +DA  ++ + ++ +   Q +
Sbjct: 319 APAAPAEAAYETILDQARFDVWLEKLKNAKLFAFDTETTGIDAQQAQLVGLSFAV--QAN 376

Query: 419 DTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL- 476
           + ++  +   +I +     +D+         +L  LK   E+ + LK+G + K+D  +L 
Sbjct: 377 EAAYIPLTHSYIGVPEQLDRDT---------VLRALKPILEDPNKLKVGQHAKFDMNILA 427

Query: 477 -------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525
                     GI++RG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I     
Sbjct: 428 NCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQDIAGKGA 487

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQME 584
             +  D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V++++E
Sbjct: 488 KQLTFDQIALEQAGPYAAEDADVTLRLHQTLFDKLSAIPSLASVLTDIEIPLVPVLARIE 547

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G  +D +LL   S E+   +++LE   ++++GE+FNL SPKQLG IL+ KL  P   K
Sbjct: 548 RQGAFVDAELLGIQSIELGNKMIALEREAFEIAGEEFNLGSPKQLGVILYEKLGLPVLKK 607

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T  GQ  T  + L ++   D+ + K ++E R +SK+KSTY D LP  IN RT R+HT Y 
Sbjct: 608 TAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 667

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A   TGRL+S +PNLQNIP++T  G++IR+AF++P   KL++ADYSQIELRI+AH+++ 
Sbjct: 668 QAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSRD 727

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F N+LD+H   AAE+F V + +V+   RR AK INF +IYG+   +L   + + 
Sbjct: 728 EGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKLGKDIGVD 787

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
              A  YI  YF R+PG+ EY+++T+      G+VETIFGRR++  +INS K   R   E
Sbjct: 788 TKTAKAYIDTYFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAAAE 847

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA-SQI 943
           R AINAP+QG+AADI ++AM++V   L    L  K++LQ+HDELV EV E+ +     +I
Sbjct: 848 RTAINAPMQGTAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQVREEI 907

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            VH  E A      L VPL V + V NNW E
Sbjct: 908 RVHMSEAA-----KLDVPLLVEVGVGNNWDE 933


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 351/986 (35%), Positives = 550/986 (55%), Gaps = 58/986 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFL+D  + I+R +YA    P ++ K  GL  +AI GF N L  +++  R +  
Sbjct: 1   MADQKRLFLLDAYALIFRGYYAFIKNPRINSK--GLDTSAILGFTNSLLDVIKRERPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E++  YKANR   PE +   +P +    +A  IP +  +G+EA
Sbjct: 57  --HLAVCFDRGGSVDRVEMFEAYKANRDATPEAIKLAIPYIENILKAMHIPVVVKEGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI 174
           DDII T    AEKE + V +++ DKD  QLVS    +Y  +     E   I  V+KK+ I
Sbjct: 115 DDIIGTLAKKAEKENYKVFMVTPDKDFAQLVSENIFMYRPMFGGGYETWGIPEVLKKFEI 174

Query: 175 P-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             PE+++    + GDS+DNIPG+PG+G KTA   L  YG++EN+L N   +K  K +E I
Sbjct: 175 ERPEQVIDYLGMMGDSVDNIPGLPGVGEKTAKKFLATYGSMENLLDNTHELK-GKMKEKI 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E   LS+KL  +  DVP+    +   L+  + P++    + LEF +L + +  T+ 
Sbjct: 234 EANKELGLLSKKLARIMLDVPVDFNEKEYELDQPDLPKVTEIFEELEFRRLADNLIKTF- 292

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
             A              +K  A      + +T    QFS      S  ++ Q  Q+L   
Sbjct: 293 --ATETTTNSETNTEKSSKKTA------KTSTAGAGQFSLFGGGGSA-SATQVQQELSSR 343

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           +  K   +      Y  +     ++ ++Q L    S  F   T  ++   ++ + IA S 
Sbjct: 344 KTSKDIPH-----IYQSVAPGMAMKLFLQNLMKQTSVCFDTETTGLNPLTAELVGIAFSW 398

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              K          +I       Q         +E++  L+ FFE+E   KIG N+KYD 
Sbjct: 399 EASK--------GFYIPFPEDQDQ--------AQELIEQLRPFFEDEKIEKIGQNLKYDI 442

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSI 528
            VL +Y + ++G + D ML  Y+++     H++  +A+ +L+YT     + I K  K+ +
Sbjct: 443 KVLRKYNLIIKGAYFDTMLAHYLINPDMR-HNMDVLAETYLNYTPISITELIGKKGKNQL 501

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            + ++   +  E+A+E++++  QL    +P+L   K   ++  ++ P++ V++ ME+ GI
Sbjct: 502 SMRQVPIEKQTEYAVEDADITYQLASHFKPELKDAKTEELFNDIEIPLLSVLADMELEGI 561

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
            +D D L  +S E++ ++ +LE +IY+ +GE+FN++SPKQLG+ILF KLK      KTKT
Sbjct: 562 NLDVDFLNSLSEELNTDIKNLETSIYEAAGEEFNIASPKQLGEILFGKLKLVDKPKKTKT 621

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ +TA+D+      D+ IIKNILE+R L+K+KSTY D+LP+ + + T RVHT Y    
Sbjct: 622 GQY-STAEDVLSYLAQDHEIIKNILEYRGLAKLKSTYIDALPDQVEESTGRVHTDYMQTV 680

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITP 766
             TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A ++  T 
Sbjct: 681 AATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENYTLLAADYSQIELRIIAALSDETT 740

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F+N  DIH   A+++F V +++V+ + R +AKT+NF IIYG+S F L+ Q  + R 
Sbjct: 741 MIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRG 800

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           E+ + I  Y+  +P + +Y+ +  +F R NGYV+T+ GRR +  +INS  + +R+  ER 
Sbjct: 801 ESKELIDAYYETYPKLKKYMSELVDFARDNGYVQTVLGRRRYLKDINSRNAVVRSAAERN 860

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+NAPIQGSAADI + AMI++HK L      TKMLLQ+HDELVF+  + E+     +I  
Sbjct: 861 AVNAPIQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVHDELVFDAHKTELEEVRALIKT 920

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972
            ME A     +L VPL V I   +NW
Sbjct: 921 EMENAY----SLAVPLDVEIGTGDNW 942


>gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 352/973 (36%), Positives = 542/973 (55%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS +++RAF+A P L+    G   NAI G  + L KL++  +     +H AVIFD
Sbjct: 4   FILVDGSYYLFRAFHALPPLTTSQ-GQTTNAIKGALSALQKLMRRMQP----THMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+ + P+YKA+RP +P  L  Q+P +    +  GIP + + G EADD+I T   
Sbjct: 59  TPEPTFRHMLSPEYKAHRPAMPSELSTQIPYLHAIIKGLGIPLLLLPGAEADDLIGTLAC 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A +EG  V I + DKD+ QLV+    L D+ +++ +D + VI K+G+ P++++    L 
Sbjct: 119 RAVREGHHVLISTGDKDMAQLVNDHIKLEDSFRDQVLDHDGVIAKFGVRPDQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G  TAA LL +Y  +  IL NA  IK  K  E+I E A+   L+ +L
Sbjct: 179 GDASDGIAGVPGVGKVTAAKLLNQYQTIGGILENAHLIK-GKVGESIRENADKIPLNHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L   + P L      LEF  L+  +    + D    EP     
Sbjct: 238 ASIVCDLPLELDWHELKLGKPDVPALKKLYAELEFRALLQSLEHPNNPDNQQQEP----- 292

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                K  + E +  +D   +  + S++++Q   +                    PI+  
Sbjct: 293 ----QKSYSFE-DTKKDDIPELLETSAVAEQPVAL--------------------PISEV 327

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I++  +    V++L+   +  F + T+T    +     + +S   Q        E 
Sbjct: 328 QYHTILDKAEFLALVERLKA--APRFAVDTETTSVDYRLARIVGVSFALQAS------EA 379

Query: 427 IFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
            +I +      D  G  +    K +L  LK   EN    KIG ++KYD  V + +GIS+ 
Sbjct: 380 FYIPIG----HDYMGAPEQLDAKFVLDTLKPILENPAIGKIGQHMKYDAHVFNNHGISLA 435

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540
           G+  D ML SYVL+   + H +  +AQ +L YT    ++I       +  ++I   +   
Sbjct: 436 GWAFDTMLASYVLNPTATRHGMDDLAQYYLDYTTTTFEQIAGKGAKQLTFNQIELEKAAP 495

Query: 541 HAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+      L  + KL  +   ++ P   V+ +ME  GI++D   L ++ 
Sbjct: 496 YAAEDADITWRLYEYFAQALAKIPKLEKLLLEIEMPAAQVLYEMENNGIRLDIPFLAELG 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
                 +L+LE +  +L+G+ FN+SSPKQLG+ILF KL    G KT +GQ+ T    LE+
Sbjct: 556 QRFGAQILTLESHAIELAGQPFNVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   D+PII  ILE+R LSK+KSTY DSL    +  TQRVHT Y  A T TGRL+S +PN
Sbjct: 616 I---DHPIIATILEYRSLSKLKSTYTDSLIAQSDSETQRVHTSYHQAITATGRLSSTDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+ ++G++IR+AFI+P  + +++ADYSQIELR++AH ++   L + F +  DIH+
Sbjct: 673 LQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIHQ 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ +E V+   RR AK INF ++YG+S F LA QL++ R+EA +YI  YF R+
Sbjct: 733 ATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAFGLAKQLKLSRAEAQEYITLYFSRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +H+Y+E T+    + GYVET+ GRR++ + I +  + +R   ERAAINAP+QGSAADI
Sbjct: 793 PSVHDYMENTRALAAEQGYVETVLGRRLYMENIRAGNAMVRQAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMISV ++L   K   KMLLQ+HDELVFEV E++    + ++   M      + ++ 
Sbjct: 853 IKLAMISVDQALP--KEHAKMLLQVHDELVFEVDEDKADEVTALLKKLMPAVLQGRADIA 910

Query: 960 VPLKVNIKVSNNW 972
           VPL++ +    NW
Sbjct: 911 VPLEIEVGRGVNW 923


>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
 gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
          Length = 930

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 359/982 (36%), Positives = 539/982 (54%), Gaps = 74/982 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  + AV+FD
Sbjct: 7   LLLVDGSSYLYRAYHAMAQLTAP-DGAPTGAMYGVLNMLRRL----RADYVHDYCAVVFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122
                FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   EADD+I 
Sbjct: 62  AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++   
Sbjct: 118 TLAKMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 177

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+    E   L
Sbjct: 178 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLQAALEQLPL 236

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLINRVATTYDCDAANI 299
           S  LV ++TDV +   L     +D    R  S      A++F +   R   T+  +A + 
Sbjct: 237 SYNLVTIKTDVDLHTELS----DDLESLRRTSPKWSQLAVDFKRWGFR---TWLKEAESR 289

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                D +   +  I  +  +D +T+                           ERL + +
Sbjct: 290 MHEAADGDLFGSDTIGEQAALDMETSS--------------------------ERLHEKA 323

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P   D Y  +         + KL   G       T ++DA ++  + I+I+       
Sbjct: 324 VAPEKLD-YQAVTTEAQFAALLDKLSRAGKIGIDTETTSLDAMNAALVGISIA------- 375

Query: 420 TSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ V   
Sbjct: 376 --FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFAN 431

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           Y I++ G   D ML SY+++S    H +  ++++WL     T + +       I    ++
Sbjct: 432 YDIALNGIAGDSMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISFADVA 490

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q  E+  ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+  
Sbjct: 491 IGQATEYTAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDRAE 549

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKT 652
           L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G   T
Sbjct: 550 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
               LEQ+   D  + K IL+ R L+K+KSTY D LP  I  +  RVHT Y+ A  +TGR
Sbjct: 610 NEAVLEQL-APDYALPKIILQNRSLAKLKSTYTDKLPEMIFPKDGRVHTTYAQAVAITGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   F+
Sbjct: 669 LASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A  +I
Sbjct: 729 NGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFI 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINAP+
Sbjct: 789 DRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+A+D+ +RAMI V + L+   L TK+++Q+HDELV EVP+ E+    + +   M K  
Sbjct: 849 QGTASDLIKRAMIDVSRWLDLDGLKTKLIMQVHDELVLEVPKAELDLVKEKLPQIMAKVD 908

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              +N  VPL   + V  NW+E
Sbjct: 909 EGMLN--VPLVAEVGVGMNWEE 928


>gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454]
 gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
          Length = 927

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 348/976 (35%), Positives = 542/976 (55%), Gaps = 73/976 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  DG P  A+ G  NM+ +L    R++  A + A +FD
Sbjct: 15  LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGLINMMRRL----RRDIPAEYSACVFD 69

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y DYKA+RP +PE L  Q+  + +A +A G P + I+  EADD+I T   
Sbjct: 70  AKGKTFRDDWYADYKAHRPPMPEDLARQIEPIHVAVRALGWPLLMIERVEADDVIGTLAV 129

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G  V + + DKDL QLV+    L +T+  E++D + VI K+G+PPE++V    L 
Sbjct: 130 RAAQAGMNVVVSTGDKDLAQLVNERVTLINTMTNERLDRDGVIAKFGVPPERIVDYLTLI 189

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y  L+ I+ +A+ IK           A    L R L
Sbjct: 190 GDTVDNVPGVDKCGPKTALKWLAQYQTLDGIIEHANDIKG----------AVGDNLRRAL 239

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             L T                   RL++     + +  +  +AT+     A  +  + DI
Sbjct: 240 AFLPT-----------------ARRLVTVHTECDLSPQVQSIATSLQA-RAEAKDELRDI 281

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS---EQTPQKLFLERLQKLSQYPI 363
                    +  E+D +    T  F++ +D    +     E  P    +ER         
Sbjct: 282 YLRHGFKTWLR-ELDSEAGPDT--FTATADGGVALGPGAVEPAPAT-DIER--------- 328

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  +   +  ++W+  +E     SF   T ++D   ++ + ++ +T   +      
Sbjct: 329 ---QYETVNAWEQFERWLAVIEAAPLTSFDTETTSLDPMRARIVGVSFATEPGR------ 379

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               ++ L+ H   D         E+L+ LK + E+    K+G ++KYD  VL  +GI++
Sbjct: 380 --AAYVPLA-HRGPDHP-VQLPRDEVLARLKPWLESPAHKKVGQHLKYDAQVLASHGITL 435

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G E D +L SYVL+S R  HD+ ++A + L       +++     + I  D++S     
Sbjct: 436 AGIEHDTLLESYVLESHRP-HDMDNLATRHLGVKTIKYEDVAGKGAAQIGFDEVSVDVAT 494

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           E++ E++++ L+L  +L P++ VEK L +VY  ++ P   V+  +E  G+ ID+D L   
Sbjct: 495 EYSAEDADITLRLHQVLYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKDRLVAQ 554

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+   +L L+   Y L+G +FNL+SPKQ+G+I F +L+ P   KT +G   +T +D+ 
Sbjct: 555 SNELGIRMLELQAEAYALAGGEFNLNSPKQIGEIFFQQLQLPVVKKTPSGA-PSTDEDVL 613

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D P+ K +L++R L+K+KSTY D LP  IN  T RVHT Y+ A  +TGRLAS +P
Sbjct: 614 QKLAEDYPLPKVLLDYRALTKLKSTYTDKLPKMINPDTGRVHTNYAQAVAVTGRLASNDP 673

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T  G++IR AFI+PP   ++SADYSQIELRI+AHI+    L   FE+  D+H
Sbjct: 674 NLQNIPVRTPEGRRIREAFIAPPGSSIVSADYSQIELRIMAHISGDASLMAAFEHGEDVH 733

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  A+EIFGV  ++V+ + RR AK INF +IYG+S F LA+ L I R  A  YI RYF R
Sbjct: 734 RATASEIFGVTRQEVTSEQRRIAKVINFGLIYGMSAFGLASNLGIARDAAKLYIDRYFAR 793

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+++T+   +  G+V+T+FGRR+   EIN      R   ERAAINAP+QG+AAD
Sbjct: 794 YPGVARYMDETRMEAKSCGFVQTVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAAD 853

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + +MI+V   +E  ++ +++++Q+HDELV EVP++E+    +II   + +       L
Sbjct: 854 LIKLSMITVQDWIERARVKSRLIMQVHDELVLEVPDDEL----EIIRAKVPELMCSVAQL 909

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL   +    NW+E
Sbjct: 910 NVPLVAELGTGANWEE 925


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 360/994 (36%), Positives = 559/994 (56%), Gaps = 91/994 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   LFL+D  + IYR++YA    P ++ K  G+  +AI GF N L  +L    K   
Sbjct: 1   MLKVMKLFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KREN 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EA
Sbjct: 55  PTHIAVAFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGI 174
           DD+I T +  AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+
Sbjct: 115 DDVIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGL 174

Query: 175 PP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRE 231
              E+++ L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K  QKK+ E
Sbjct: 175 TSTEQVIDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE 234

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  E  R S+ L  ++TDVPI       + E  N  RL      LEF   IN++++ 
Sbjct: 235 ---ENVEQIRFSKFLATIKTDVPIGFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE 291

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
               AA   PV  D+        AI T      + +  + S L+D  S      TP   +
Sbjct: 292 -PVKAAPKGPVQGDL-------FAIFT----PESTEEPKKSILTDLKS------TPHNYY 333

Query: 352 L----ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           L    E+   L+++ +  + +                      +F   TD +D   +  +
Sbjct: 334 LTDTEEKQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLV 371

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            ++ +  +         E  ++ +  ++ + +        +++       +N   LKIG 
Sbjct: 372 GMSFAVKEN--------EAWYVPVPANSVEAA--------KVVERFSPALQNPKSLKIGQ 415

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           NIK+D LVL +Y + + G   D M+  Y+L+     H +  +A+ +L Y     +E++  
Sbjct: 416 NIKFDILVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGP 474

Query: 524 R-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           + K+ + +  +   Q+ E+A E+++V L+L     P+L  E L  ++  ++ P+I V+++
Sbjct: 475 KGKNQLSMRNVPVEQIAEYAAEDADVTLKLKNYFAPELKKEGLESLFTTIEMPLIYVLAE 534

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME TG+ +D   LKQ S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK    
Sbjct: 535 MEATGVTLDTVALKQSSGELTASMNKLEQEVYELAGAEFNINSTKQVGEILFDRLKLDEK 594

Query: 643 AK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           AK TKTG + T+   LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT
Sbjct: 595 AKKTKTGGYSTSEDVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHT 653

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760
            ++ A T TGRL+S  PNLQNIP++ DLG++IR+AFI   T  L  SADYSQIELRI+AH
Sbjct: 654 SFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAH 713

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    + + F++  DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F LA +
Sbjct: 714 LSGDPHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAER 773

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L IPRSE+ + I  YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R
Sbjct: 774 LGIPRSESKELIDGYFSTYPRIKEYMEESVKVAKEKGYVETIFKRKRFLPDINSHNAVVR 833

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER AINAPIQGSAADI + AM+ +++  E+  L +KM+LQ+HDEL F V +EE    
Sbjct: 834 GYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEVV 893

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +I++  ME      + L+VPL  +     NW E
Sbjct: 894 KKIVLEEMENV----MKLQVPLIADCGEGENWLE 923


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 358/988 (36%), Positives = 532/988 (53%), Gaps = 92/988 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL  SR +   SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFRN++Y +YKA+RP +P+ L  Q+ PL R+  +A G+P I I G EADD+I T
Sbjct: 62  FDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRI-IRALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I++ A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      L  +  +   LI     +EF + +  V        A
Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELEAKPADRDELIKCYGEMEFKRWLAEVLDNKAPTTA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +    +        + IET+ D                                    
Sbjct: 301 AAKVETTETQEETAPSVTIETQYD------------------------------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        I+    + +W+ KL+     +    T ++D   ++ + +        
Sbjct: 325 ------------TILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGL-------- 364

Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYD 472
              SF VE     ++ L    + D  G    L K+  L  L+   E+    K+G N+KYD
Sbjct: 365 ---SFAVEAGKAAYLPL----AHDYVGAPQQLDKQTALEKLRPILEDAKLKKVGQNLKYD 417

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
             VL   GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I       +
Sbjct: 418 ISVLANAGIQLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQL 477

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++I       +A E++++ L+L   L P+L  E +L  V+  ++ P+I ++S +E  G
Sbjct: 478 TFNQIQLETAAPYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQG 537

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  LL Q S E+++ +  LE   YD++GEKFNLSSPKQL  + F KL +P   KT  
Sbjct: 538 VFIDSMLLGQQSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPK 597

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + L ++   D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+
Sbjct: 598 GAPSTAEEVLVELAL-DFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQAN 656

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L
Sbjct: 657 AATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGL 716

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F    DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+E
Sbjct: 717 LKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNE 776

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAA
Sbjct: 777 AQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAA 836

Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMIS+   ++ D +    M++Q+HDELVFEV  ++  T    +  
Sbjct: 837 INAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCE 896

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M KA     NL V L     + +NW +
Sbjct: 897 LMAKAA----NLDVELLAEAGIGDNWDQ 920


>gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a]
 gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a]
          Length = 921

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 348/992 (35%), Positives = 536/992 (54%), Gaps = 102/992 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +     R   K     + E+ E
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIR-GAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L    C  P                            
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQL---HCGEP---------------------------- 268

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                                 DRDT ++     +F S  +   + ++++  Q+L +E  
Sbjct: 269 ----------------------DRDTLMELYAELEFKSWIEDLQR-DAKRAGQELTIEEP 305

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              ++      +Y  I+       W++KL+     +F   ++  DA  ++ + ++ + + 
Sbjct: 306 TAEAR----EAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+   +K+G + K+   +
Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKIKVGQHAKFAINL 411

Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           L           GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI   
Sbjct: 412 LANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGK 471

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V+++
Sbjct: 472 GAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLAR 531

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 592 SKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A
Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ 
Sbjct: 712 QDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R ++  Y+ RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   S+R  
Sbjct: 772 VDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+
Sbjct: 832 AERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   M  A      L VPL V + V NNW E
Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
 gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
          Length = 948

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 357/993 (35%), Positives = 546/993 (54%), Gaps = 90/993 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS +++R F+A P+  +   GL  N+I G  N L KL++  R     +H AV FD
Sbjct: 19  FILVDGSYYMFRNFHALPVTMQTTQGLHTNSIRGTLNALKKLMEKYRP----THMAVAFD 74

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++ P YK +RP++P  L  Q+P +    QA GIP + I+G EADDII T  +
Sbjct: 75  TKAPTFRHKLSPIYKGDRPEMPAELAEQIPYIHKMIQAMGIPLLAIEGVEADDIIGTLAH 134

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  EG  V I + DKD+ QLV+P   + ++  +++ DI  V +K+G+ P +++    L 
Sbjct: 135 RACLEGHHVIISTGDKDMCQLVNPCVIVENSFDDKRYDIAGVKEKFGVEPRQIIDYLTLM 194

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+ GIG KTA  LL++Y +++NIL N  ++K  K+++  L+  ++  L ++L
Sbjct: 195 GDASDGIKGVAGIGAKTAQKLLEQYDSIDNILANVDQLK-GKQQQTFLQSTDSIALDKRL 253

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD+ I    E L L     P   SF                      NIE      
Sbjct: 254 ATIITDLDIVPDWETLRL-----PTDPSF----------------------NIE------ 280

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN-- 364
              E +  AI TE++  + I +              + ++ Q   +E + K SQ   N  
Sbjct: 281 ---EKR--AIFTELEFKSEIASLNHPFHPSNNGNFKAAESAQNAVVEAI-KTSQDSKNTA 334

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSF 422
           N  +  +    D    +Q+L    S  F I T+T D    H++ + ++ +          
Sbjct: 335 NKQWHTVTTQADFDTLIQRLG--ASKHFVIDTETTDVNWQHAELVGLSFALQSH------ 386

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             E  ++ ++ H  +       LT+E +L+ LK   +N    KIG ++KYD  +L  Y I
Sbjct: 387 --EAYYVPVA-HVDEMGNRIEQLTREDVLAQLKPILQNPQIGKIGQHLKYDAHILANYHI 443

Query: 482 SM-----RGFEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           ++         D ML SYV+++  + H +  +A+ +L   + T +++       I  DK+
Sbjct: 444 NLINEPSNWAMDTMLASYVINAVATRHGMDDLARHYLHTQTITFEDVAGKGAKQITFDKV 503

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQ 589
             +   ++A E++++  QL+ L   KL  E    KLLH    L+ P+  ++ QME  GI 
Sbjct: 504 PLTVASDYACEDADITYQLFELFSEKLKAEPNNAKLLH---ELEIPVAQILCQMEHDGIL 560

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +++  L ++SA   + + +LE   +  +GE FNL+SPKQLG++LF +L    G KTKTGQ
Sbjct: 561 LNKAFLGELSARFDEKIQALETVAFAQAGETFNLASPKQLGEVLFDRLGITGGKKTKTGQ 620

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+   L  I   D+P+I+ +LE R LSK+KSTY D+L N +     RVHT Y  A T 
Sbjct: 621 YSTSEAVLATI---DHPLIETVLEHRSLSKLKSTYTDALAN-VADSNDRVHTSYHQALTT 676

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S EPNLQNIPI+TD G+ IR AFI+P  +K++SADYSQIELR++AH A    L +
Sbjct: 677 TGRLSSTEPNLQNIPIRTDTGRLIRGAFIAPKGRKVLSADYSQIELRLMAHFANDPVLIR 736

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   DIHR  AAEI G   + V+ + RR AK +NF ++YG+S F LA QL   R +A 
Sbjct: 737 AFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVNFGLLYGMSEFGLAKQLGFTRQQAQ 796

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIK YF R+P +  Y++ T+   +  GY+ TI GR++   ++  P   +R   ERAAIN
Sbjct: 797 DYIKLYFARYPTVRAYMQATRTAAQNQGYITTILGRKLFTPDMQHPNRGVRQAAERAAIN 856

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAADI + AMI+V++ L       KMLLQ+HDELVFE  E++    +++I ++M+
Sbjct: 857 APLQGSAADIIKLAMIAVNEVLPTEH--AKMLLQVHDELVFEADEDKAEAIAELIKNAMQ 914

Query: 950 KACLPK--------INLRVPLKVNIKVSNNWQE 974
           +  L K        ++  VPL V + + +NW E
Sbjct: 915 E-VLSKTAKDKGWDVDFAVPLVVEVGIGDNWDE 946


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 359/988 (36%), Positives = 557/988 (56%), Gaps = 91/988 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  G+  +AI GF N L  +L    K    +H AV
Sbjct: 3   LFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KRENPTHIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD+I T
Sbjct: 57  AFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179
            +  AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+   E++
Sbjct: 117 VSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237
           + L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K  QKK+ E   E A
Sbjct: 177 IDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE---ENA 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  R S+ L  ++TDVPI       + E  N  RL      LEF   IN++++     AA
Sbjct: 234 EQIRFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE-PVKAA 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL----E 353
              PV  D+        AI T      + +  + S L+D  S      TP   +L    E
Sbjct: 293 PKGPVQGDL-------FAIFT----PESTEEPKKSILTDLKS------TPHNYYLTDTEE 335

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           +   L+++ +  + +                      +F   TD +D   +  + ++ + 
Sbjct: 336 KQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLVGMSFAV 373

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         E  ++ +  ++ + +        +++       +N   LKIG NIK+D 
Sbjct: 374 KEN--------EAWYVPVPANSVEAA--------KVVERFSPALQNPKSLKIGQNIKFDI 417

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           LVL +Y + + G   D M+  Y+L+     H +  +A+ +L Y     +E++  + K+ +
Sbjct: 418 LVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQL 476

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +   Q+ E+A E+++V L+L     P+L  E L  ++  ++ P+I V+ +ME TG+
Sbjct: 477 SMRNVPVEQIAEYAAEDADVTLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGV 536

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D   LKQ S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK    AK TKT
Sbjct: 537 TLDTVALKQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKT 596

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T+   LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A 
Sbjct: 597 GGYSTSEDVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV 655

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITP 766
           T TGRL+S  PNLQNIP++ DLG++IR+AFI   T  L  SADYSQIELRI+AH++    
Sbjct: 656 TSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F++  DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F LA +L IPRS
Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRS 775

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           E+ + I  YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER 
Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERN 835

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM+ +++  E+  L +KM+LQ+HDEL F V +EE     +I++ 
Sbjct: 836 AINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEEVKKIVLE 895

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME      + L+VPL  +     NW E
Sbjct: 896 EMENV----MKLQVPLIADCGEGENWLE 919


>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
 gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
          Length = 902

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 356/984 (36%), Positives = 551/984 (55%), Gaps = 115/984 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+++RA+YA P L+ +  G P  A+ G  NML KL+   + +    + AV+FD
Sbjct: 16  LILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVAVVFD 70

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+++Y  YKANR ++P  L  Q+ PL  +  +A G P I  +G+EADD+IAT  
Sbjct: 71  PKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEI-IRALGFPLIIKEGYEADDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A+++G  V + + DKDL Q+V+    L +T+ +  ++ + V++K+G+PPEK++    L
Sbjct: 130 KKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTL 189

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
           TGD+ DNIPG+P +G KTA   L +Y ++EN++ +A+ IK  K  EN+    +   L R+
Sbjct: 190 TGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHANEIK-GKVGENLRACIDDLPLMRR 248

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LVM                                                     V+ D
Sbjct: 249 LVM-----------------------------------------------------VISD 255

Query: 306 INTTENKGIAIETEIDRDTTIK---TSQFSS-----LSDQTSKINSEQTPQKLFLERLQK 357
           +   EN    I+TE +R+  I+     +F S     L++Q  K+ + Q            
Sbjct: 256 LPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQDKKVAAFQ------------ 303

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I + K  ++W++KL      +F   T   +A  +K + ++ +     
Sbjct: 304 ----------YATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH- 352

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL--TKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  E  ++ L      D TG       +E+L  LK   E+ +   I  N+KYD  V
Sbjct: 353 -------EAAYVPLG----HDYTGAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEV 401

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L + G+++R    D +L SYVL+S  + HD+ ++A K+L       +++       I  +
Sbjct: 402 LAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFN 461

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590
            ++  +   +A E+++V LQL   L P +  EK L  V+E+++ P++ ++ QME+ G+ +
Sbjct: 462 HVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLV 521

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L+  S E+   +  LE+  Y L+G +FNLSSPKQL  IL+ +LK P   KT  GQ 
Sbjct: 522 DTAMLQAQSLELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ- 580

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA+++ Q    D P+ K ILE R L+K+K+TY D LP  ++  ++R+HT Y+   T T
Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIPI+T+ G+KIRRAFI+PP  ++++ADYSQ+ELRI+AHI+K   L + 
Sbjct: 641 GRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKA 700

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIHR  AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L  QL I R  A +
Sbjct: 701 FDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQE 760

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF R+P +HEY++K +      GYVET+FGRR++  +I++     R   ERAAINA
Sbjct: 761 YIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINA 820

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI + AMI V   L+ + +   +++Q+HDELVFEV E+++      I  +ME+
Sbjct: 821 PMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEE 880

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + L VPL V++ V  NW E
Sbjct: 881 A----VALSVPLVVDVGVGGNWDE 900


>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
 gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
          Length = 943

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 351/992 (35%), Positives = 544/992 (54%), Gaps = 69/992 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFL+D  + I+R +YA    P ++ K  G   +AI GF N L  +++  R +  
Sbjct: 1   MAAQKRLFLLDAYALIFRGYYAFIKNPRINSK--GFDTSAILGFTNSLLDVIKRERPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E++P+YKANR + PE +   +P +    +A  IP I  +G+EA
Sbjct: 57  --HLAVCFDRGGSVDRVEVFPEYKANRQETPEPITLAIPYIESILKAMKIPVIVKEGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGI 174
           DDII T +  AEKEG+   +++ DKD  QLVS    +Y        E   I  V +K+G+
Sbjct: 115 DDIIGTLSKKAEKEGYQTFMVTPDKDFAQLVSENIFMYRPKFGGGYETWGITEVQEKFGV 174

Query: 175 P-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             PE+++    + GDS+DNIPG+PG+G KTA   L  YG++E +L +   +K  K +E +
Sbjct: 175 ERPEQVIDFLGMMGDSVDNIPGLPGVGEKTAKKFLAAYGSMEGLLAHTHELK-GKMKEKV 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E   LS++L  +  DVP+    E   + D +   +      LEF +L++ +  T+ 
Sbjct: 234 EANGELGMLSKQLATIMLDVPVEFNEEDFEMCDPDLEAVTEIFNELEFRRLLDNLTKTF- 292

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                         + EN       E +  TT K +Q +S    T + +   TP      
Sbjct: 293 ------------AKSDENSA-----EANTKTTSKANQKAS---TTGQFDLFATPGGGNAT 332

Query: 354 RLQKLSQYPI--NNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               +S Y      D + ++ NT    +  +QKL    S  F   T  + A   + + IA
Sbjct: 333 EATNISGYQTIKTTDHFYQLANTPLSRKMLLQKLLKQQSVCFDTETTGLKALEVELVGIA 392

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S          K +  ++      S+        T  IL   + FFE+    K+G N+K
Sbjct: 393 FSWE--------KGKGYYVAFPEDQSE--------TTAILEEFRPFFESTTIEKVGQNLK 436

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRK 525
           YD  VL  Y + ++G   D M+  Y+++     H++  +++ +L+Y    I+    K  K
Sbjct: 437 YDIKVLSNYDMPVKGQLFDTMIAHYLINPDMR-HNMDVLSETYLNYQPVSIVELIGKKGK 495

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           + + + ++   Q  E+A+E++++  QL      +L    L  ++  ++ P++ V+S MEI
Sbjct: 496 NQLSMRQVPLEQQTEYAVEDADITYQLKEHFIKELESGHLTKLFSDVEVPLVSVLSAMEI 555

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAK 644
            GI +D D L ++S  ++ ++  LE++IY+ +GE+FN+ SPKQLG ILF KLK      K
Sbjct: 556 EGINLDPDFLGELSKALAVDIDRLEKDIYEQAGEEFNIGSPKQLGPILFDKLKLVDKPKK 615

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQ+ +TA+D+      D+ I+ +ILEWRQ  K++STY D+LPN IN +T R+HT Y+
Sbjct: 616 TKTGQY-STAEDVLSYLAKDHQIVADILEWRQYRKLQSTYVDALPNEINPKTNRIHTVYA 674

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIA 762
            A   TGRL+S  PNLQNIPI+T+ G+++R+AF+ P  +   L++ADYSQIELRI+A ++
Sbjct: 675 QAVAATGRLSSNNPNLQNIPIRTERGRQVRKAFV-PRDENYVLLAADYSQIELRIIAALS 733

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   + Q F++  DIH   A+ +F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  
Sbjct: 734 KEDTMMQAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTD 793

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + RSE+ + I  Y+  +P +  Y+     F R+NGYVET+ GRR +  +INS  + +R  
Sbjct: 794 LTRSESKELIDTYYETYPKLKAYMSNQVAFARENGYVETVLGRRRYLKDINSRNAIVRGA 853

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER A+NAPIQGSAADI + AMI+++   E+    +KMLLQ+HDELVF+  ++E+     
Sbjct: 854 AERNAVNAPIQGSAADIIKLAMINIYNRFEEEGFKSKMLLQVHDELVFDAHKDELEIIKP 913

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           II   ME A      + VPL V I V  NW E
Sbjct: 914 IIKEEMENA----FKMEVPLDVEIGVGQNWLE 941


>gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
 gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
 gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
 gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
          Length = 929

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 360/986 (36%), Positives = 541/986 (54%), Gaps = 71/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMAQLTAP-DGAPTGAMYGVLNMLRRL----RADYVHDY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 56  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----IGWPVLVIPQVE 111

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V  K+G+ P
Sbjct: 112 ADDVIGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRP 171

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+   
Sbjct: 172 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLRAA 230

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +   LS  LV ++TDV +     H  L D                + + R A  +    
Sbjct: 231 LQRLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 267

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E           F S S  + + +N+E  P     E+ 
Sbjct: 268 ---AQLVVDFKRWGFRTWLKEAESRMHEAADGDLFGSDSIGEQAALNAE-VPS----EKQ 319

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            +L+  P   D Y  +     +   + KL    +      T ++DA ++  + I+I+   
Sbjct: 320 PELAPTPEKLD-YQAVTTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIA--- 375

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E I+I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 376 ------FQAGEAIYI--PVGHSLTAAPEQIDLQDVLGRLKPHLENPALKKIGQNLKYDQH 427

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 428 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISF 486

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 487 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 545

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y ++G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 546 DRAELSRQSAELGAELMKLEQEAYAVAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 606 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 665 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 725 TAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 785 KTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 845 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 903

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 904 AK--VDGGLLDVPLVAEVGVGENWEE 927


>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
 gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
          Length = 950

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 361/986 (36%), Positives = 549/986 (55%), Gaps = 82/986 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +K+  L+L+DG + +YRAFYA      R  DG+P  A+ GF + L ++++  + E    +
Sbjct: 32  KKKPGLYLLDGMAMVYRAFYALQQARMRTRDGVPTGAVFGFASSLLRIIEEYQPE----Y 87

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD P  TFR+E Y  YKANRP  P+ L+ QL  +R   +AFGIP + + GFEADD+
Sbjct: 88  LAVAFDSPEKTFRHEKYEAYKANRPAPPDDLITQLADIRELIKAFGIPLVIMPGFEADDL 147

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T     E +   V I++ DKD+ QLV     L    K+    E +    V +++G PP
Sbjct: 148 IGTAARKFEDD-CQVFIVTPDKDMSQLVHDGVRLLKPGKKQNEFELVGSREVAEQFGAPP 206

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+ + L  LTGD+ DNIPG  GIG KTA+ LL+EYG+L+NI  +   +K + R+ ++ E+
Sbjct: 207 EQFIDLLTLTGDTSDNIPGAKGIGPKTASSLLEEYGSLDNIYAHLDDLKPRARK-SLEEF 265

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E   L R+LV +RTD+ + + L+ L     +   L + L+ LE   +  RV        
Sbjct: 266 REIMPLVRELVTIRTDLDVPLTLDDLHSGKPDADALFALLRRLELKAIAARV-------- 317

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P  L I                D    T+       + S++++E T          
Sbjct: 318 ----PAALGI----------------DPPAATATDGESDPEASEVSAEPT---------- 347

Query: 357 KLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                P    S   +++T++   + ++KLE   S S    T ++D F ++   I+ S   
Sbjct: 348 ---LIPAGEGSEYHLIDTEEAFGKLLEKLEQADSFSVDTETTSLDTFEAELAGISFSLEP 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    E  F+     T  D+  K T+ K     LK   EN    K G N+KYD LV
Sbjct: 405 G--------EAFFVYFG-ETGLDA--KTTVAK-----LKPLLENPEIGKTGQNLKYDILV 448

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L  YG+ ++  E D ML SYVLD   S H++  +A   LS       E++ + KS+I I 
Sbjct: 449 LKNYGVELQPVEFDTMLASYVLDP-ESRHNLDDMAALHLSRQTVKYDELVGTGKSAIGIF 507

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           ++   ++ ++A +++++ L+L   L  KL    +LL V   L+ P++ V++ ME  G+ I
Sbjct: 508 EVEPQKLSDYACQDADITLKLRGELAAKLEATPELLEVCRTLEFPLVRVLADMEHQGVSI 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D + L +++ ++++ L+ L E I++ +GE FN+ SPKQLG ILF  LK P+   TKTG +
Sbjct: 568 DTEHLAKLAVKVNEELVGLTERIHEAAGETFNIDSPKQLGHILFDVLKLPTKKATKTG-Y 626

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  Q LE++    NPI   +LE+R L K+K TY ++LP  ++  T R+HT ++ + T T
Sbjct: 627 STNVQVLEELALL-NPIAAEVLEYRSLQKLKGTYIEALPKLLHAATGRLHTSFNQSITAT 685

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIPI+TDLG++IRRAFI S P   L+SADYSQIELR+ A ++    L +
Sbjct: 686 GRLSSSNPNLQNIPIRTDLGKEIRRAFIPSNPENLLLSADYSQIELRVAAELSGDPMLIE 745

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N  DIH   A  IF  + ++V+  MRR AK +NF ++YGI PF L+ +L IP+ EA 
Sbjct: 746 AFRNHEDIHAATARVIF--DTDEVTSDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAK 803

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  Y  ++PG+   ++ T    R+ GYV T+ GRR +  ++NSP  +IR   ER  +N
Sbjct: 804 EIIDTYMAKYPGMFSALQTTVEEARKLGYVTTLMGRRRYVPDLNSPNGNIRKAAERVTMN 863

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AADI + AM ++ + L++ +L + MLLQ+HDEL+FE P +E +  ++++   M 
Sbjct: 864 TPIQGTAADIIKYAMCTISRRLKEERLNSVMLLQVHDELLFETPADEQSRLTELVEKCMV 923

Query: 950 KACLPKINLR-VPLKVNIKVSNNWQE 974
            A   K  +R VP++V   V  NW E
Sbjct: 924 DAA-SKCGVRNVPVEVETGVGKNWLE 948


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 358/988 (36%), Positives = 556/988 (56%), Gaps = 91/988 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  G+  +AI GF N L  +L    K    +H AV
Sbjct: 3   LFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KRENPTHIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD+I T
Sbjct: 57  AFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179
            +  AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+   E++
Sbjct: 117 VSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237
           + L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K  QKK+ E   E A
Sbjct: 177 IDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE---ENA 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  R S+ L  ++TDVPI       + E  N  RL      LEF   IN++++     AA
Sbjct: 234 EQIRFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE-PVKAA 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL----E 353
              PV  D+        AI T      + +  + S L+D  S      TP   +L    E
Sbjct: 293 PKGPVQGDL-------FAIFT----PESTEEPKKSILTDLKS------TPHNYYLTDTEE 335

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           +   L+++ +  + +                      +F   TD +D   +  + ++ + 
Sbjct: 336 KQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLVGMSFAV 373

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         E  ++ +  ++ + +        +++       +N   LKIG NIK+D 
Sbjct: 374 KEN--------EAWYVPVPANSVEAA--------KVVERFSPALQNPKSLKIGQNIKFDI 417

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           LVL +Y + + G   D M+  Y+L+     H +  +A+ +L Y     +E++  + K+ +
Sbjct: 418 LVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQL 476

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +   Q+ E+A E++++ L+L     P+L  E L  ++  ++ P+I V+ +ME TG+
Sbjct: 477 SMRNVPVEQIAEYAAEDADITLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGV 536

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D   LKQ S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK    AK TKT
Sbjct: 537 TLDTVALKQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKT 596

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T+   LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A 
Sbjct: 597 GGYSTSEDVLEKLRS-KHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV 655

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITP 766
           T TGRL+S  PNLQNIP++ DLG++IR+AFI      L  SADYSQIELRI+AH++    
Sbjct: 656 TSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPH 715

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F++  DIH   AA+I+G+ +EKV+  MRR AKT NF IIYGIS F LA +L IPRS
Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRS 775

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           E+ + I  YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER 
Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLSDINSHNAVVRGYAERN 835

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM+ +++  E+  L +KM+LQ+HDEL F V +EE     +I++ 
Sbjct: 836 AINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEEVKKIVLE 895

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME      + L+VPL  +     NW E
Sbjct: 896 EMENV----MKLQVPLIADCGEGENWLE 919


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 358/988 (36%), Positives = 556/988 (56%), Gaps = 91/988 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  G+  +AI GF N L  +L    K    +H AV
Sbjct: 3   LFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KRENPTHIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD+I T
Sbjct: 57  AFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179
            +  AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+   E++
Sbjct: 117 VSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237
           + L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K  QKK+ E   E A
Sbjct: 177 IDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE---ENA 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  R S+ L  ++TDVPI       + E  N  RL      LEF   IN++++     AA
Sbjct: 234 EQIRFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE-PVKAA 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL----E 353
              PV  D+        AI T      + +  + S L+D  S      TP   +L    E
Sbjct: 293 PKGPVQGDL-------FAIFT----PESTEEPKKSILTDLKS------TPHNYYLTDTEE 335

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           +   L+++ +  + +                      +F   TD +D   +  + ++ + 
Sbjct: 336 KQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLVGMSFAV 373

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         E  ++ +  ++ +          +++       +N   LKIG NIK+D 
Sbjct: 374 KEN--------EAWYVPVPANSVE--------VAKVVERFSPALQNPKSLKIGQNIKFDI 417

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           LVL +Y + + G   D M+  Y+L+     H +  +A+ +L Y     +E++  + K+ +
Sbjct: 418 LVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQL 476

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +   Q+ E+A E++++ L+L     P+L  E L  ++  ++ P+I V+ +ME TG+
Sbjct: 477 SMRNVPVEQIAEYAAEDADITLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGV 536

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D   LKQ S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK    AK TKT
Sbjct: 537 TLDTVALKQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKT 596

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T+   LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A 
Sbjct: 597 GGYSTSEDVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV 655

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITP 766
           T TGRL+S  PNLQNIP++ DLG++IR+AFI   T  L  SADYSQIELRI+AH++    
Sbjct: 656 TSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F++  DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F LA +L IPRS
Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRS 775

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           E+ + I  YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER 
Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERN 835

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM+ +++  E+  L +KM+LQ+HDEL F V +EE     +I++ 
Sbjct: 836 AINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEVVKKIVLE 895

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME      + L+VPL  +     NW E
Sbjct: 896 EMENV----MKLQVPLIADCGEGENWLE 919


>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
 gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
          Length = 941

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 352/983 (35%), Positives = 529/983 (53%), Gaps = 66/983 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDGSS++YRAF+A P L R   G P      AI G  NM+ KL    RK+  A +  
Sbjct: 8   LLLVDGSSYLYRAFHAMPDL-RVTPGDPQSPATGAIRGMVNMMQKL----RKDVRADYAV 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+ +YP+YKA R  +P+ L  Q+  +    Q  G   + + G EADD+I 
Sbjct: 63  CVFDAKGPTFRDALYPEYKAQRSAMPDDLRSQVEPIHEVVQLLGWKVLAVPGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A  +   V I S DKDL QLV     + DT+ + + D+  V  ++G+PP  MV  
Sbjct: 123 TLACMASSQQIEVIISSGDKDLSQLVDEHITVIDTMNDRRRDLAGVEAEFGVPPRLMVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q L GD++DN+PG+P +G KTA   L EYG+L+ ++  A  IK     EN+ +  +    
Sbjct: 183 QTLVGDTVDNVPGVPKVGPKTAVKWLLEYGSLDALVARAGEIK-GIVGENLRKSLDWLPK 241

Query: 243 SRKLVMLRTDVPITIPLEHLILED--CNGPRLISFLKAL----EFTKLINRVATTYDCDA 296
            R+L+ ++ D  +   ++ L   D    G +  S L+       F  L+ ++      DA
Sbjct: 242 GRELLTIKKDCELADYIDGLPAMDSIAIGAQQTSALRTFYLKYGFKGLVGQI------DA 295

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N  P                 E+      +  +  + S  +  +  +  P  L      
Sbjct: 296 ENTPP-----------------ELVGGPERRKPRAPTASPDSPGLFDDDEPSLLDTPLAG 338

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + S     N  Y  I+  + + +W+ K+E     +    T ++D   ++ + ++ S    
Sbjct: 339 RAS-----NLLYETILTWEALDRWLAKIEAAELVAVDTETTSLDEMRAQIVGVSFSVTPG 393

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                   E  +I L+      S  +     E+L+ LK + EN    K+G NIKYD+ V 
Sbjct: 394 --------EAAYIPLT--HDYPSAPEQLPLDEVLARLKPWLENPARPKLGQNIKYDRHVF 443

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
             +GI ++G+  D ML SYVL+  +  H +AS+A++ +  +    +++       I  ++
Sbjct: 444 ANHGIEVQGYAHDTMLQSYVLEVTKP-HGLASLAERHVGRSGINYEDLCGKGVHQIKFNQ 502

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  ++  E++ E+S+  L +  +L P+L   EKLL +Y+ L+    + + ++E  G+ ID
Sbjct: 503 VDIARAAEYSCEDSDQTLDVHRVLWPQLQANEKLLFIYQ-LEMQSSETLYRIERNGVLID 561

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L + S E+ + LL LE   Y+++G+ FNL SPKQL +I F KL      KT +G   
Sbjct: 562 APMLARQSHELGQRLLQLETEAYEMAGQPFNLGSPKQLAEIFFDKLGMKVVKKTPSGARS 621

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LE++   D+P+   +LE R LSK+K TY D L    N RT RVHT Y+ A  +TG
Sbjct: 622 TDEDVLEKL-AEDHPLPAKLLEHRSLSKLKGTYTDKLAQLANPRTGRVHTHYAQAVAVTG 680

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP+KT  G+++R AF++P    + SADYSQIELRI+AHI+    L   F
Sbjct: 681 RLSSNDPNLQNIPVKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESLLHAF 740

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              LD+HR  AAE+FGV +E+VS + RR+AK INF +IYG+S F LA  L I    AA Y
Sbjct: 741 TAGLDVHRATAAEVFGVALEQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAY 800

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF R+PG+  Y++ T+   ++ GYVET+FGRR+   EINSP    R   ERAAINAP
Sbjct: 801 IDRYFQRYPGVKHYMDSTRQLAKEQGYVETVFGRRLLLPEINSPNGPRRAGAERAAINAP 860

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AAD+ + +M+ V + L+  K  TKM++Q+HDELVFEVPE E+      I   M   
Sbjct: 861 MQGTAADLIKLSMVKVQQVLDAEKRGTKMIMQVHDELVFEVPEAEVEWVRTEIPRLMAGV 920

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L+VPL   I    NW++
Sbjct: 921 A----ELKVPLLAEIGFGPNWEQ 939


>gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR]
 gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR]
          Length = 921

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 346/987 (35%), Positives = 536/987 (54%), Gaps = 90/987 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS+++RAF+A P L+    G P  AI G  NML  LL+  +     SH AV
Sbjct: 7   ENPFILVDGSSYLFRAFHAPPHLTNSK-GEPTGAIYGVVNMLRSLLKRYK----PSHMAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++IY DYKANRP +P+ L  Q+  +    QA G+P + I   EADD+I T
Sbjct: 62  VFDAKGKTFRSDIYQDYKANRPPMPDDLRSQIKPLHDIVQAMGLPLLCIDDVEADDVIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G    I + DKD+ QLV+    L +T+ +  +D E V KK+G+ P +++   
Sbjct: 122 LARQAGDKGRFTLISTGDKDMAQLVNEHVMLINTMTDTLMDPEGVEKKFGVKPNQIIDYL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+P +G KTA  LLQ   +++ I  N   + +      K     + EY 
Sbjct: 182 ALMGDSSDNIPGLPKVGEKTAQALLQSIPSIDAIYENVDAVTELSFRGAKSMPAKLNEYK 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E   +SR+L  ++ DV + +  E L ++  +  +L       EF + ++ +         
Sbjct: 242 EQLLMSRELATIKLDVAMDLQPEELKIQTADSEKLQELYSRCEFRRWLDEL--------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 ++     N+ +  ET+ ++ T+                                
Sbjct: 293 ------METGAATNQVLG-ETDGEKPTS-------------------------------- 313

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                IN D+Y  ++  K++  ++ +L      +F   T +++   ++ + ++++     
Sbjct: 314 ----DINRDAYGVLMTEKEVSDYITQLNKFDYFAFDTETTSLNYMEAELVGVSLAMAPG- 368

Query: 418 DDTSFKVETIFIDLS--VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  E ++I +      + D  G++ L    L  LK   E E   K+G N+KYD  +
Sbjct: 369 -------EAVYIPVGHDYMEAPDQVGRDWL----LEQLKPLLEAEKPQKVGQNLKYDSHI 417

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L RY I + G   D ML SYV +S  S HD+ +++  +L++   + ++I       +  +
Sbjct: 418 LRRYKIRLAGILNDTMLASYVFNSVGSRHDMDTLSLHYLNHKTISFEDIAGKGAKQLTFN 477

Query: 532 KISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +I+  Q   +A E++++  +L  +L  + K    +L  V   ++ P++ ++  ME  G++
Sbjct: 478 QIALEQAGPYAAEDADITYRLHDVLWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVR 537

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID +LL + S EI++ L +LE+  ++++GE+FNL SPKQL  I F KL+ P   KT  G 
Sbjct: 538 IDANLLGKQSQEIAEKLDALEKKAFEIAGEEFNLGSPKQLQRIFFEKLELPIVKKTPKGA 597

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L ++   D P+   IL+ R LSK+KSTY D LP  IN  T RVHT Y  A T 
Sbjct: 598 PSTAEEVLHEL-AHDYPLPDVILQHRGLSKLKSTYTDKLPKMINPDTGRVHTSYQQAVTA 656

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+T  G+++R+AFI     K+++ DYSQIELRI+AH+++   L +
Sbjct: 657 TGRLSSTDPNLQNIPIRTAEGRRVRQAFIPEQGYKIVAIDYSQIELRIMAHLSQDESLLK 716

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F   LDIHR  AAE+FG   ++VS   RR AK +NF +IYG+S F LA QL I R EA 
Sbjct: 717 AFAEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVNFGLIYGMSAFGLARQLGIARHEAQ 776

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+ +YF RFPG+  Y+E T+   ++ GYV+T+FGRR+   +I +   + R   ERAAIN
Sbjct: 777 HYMDKYFERFPGVLRYMEDTRKQAKEQGYVKTLFGRRLPLPDIKASNGARRKGAERAAIN 836

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           AP+QG+AADI ++AM+ V   ++ +      +ML+Q+HDELVFE+ E ++T   + +   
Sbjct: 837 APMQGTAADIIKKAMLKVADWIDSNNCQDDVRMLMQVHDELVFEIKESKLTDYIEQLTEV 896

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           MEKA     +L VPL       NNW E
Sbjct: 897 MEKAA----SLDVPLIAEAGKGNNWDE 919


>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
 gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
          Length = 922

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 350/980 (35%), Positives = 527/980 (53%), Gaps = 85/980 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL    K+   SH AV+FD
Sbjct: 14  LILVDGSSYLYRAYHAPPHLTNSR-GEPTGAVYGVVNMLRSLL----KQYGPSHMAVVFD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EIY +YKA+RP +P+ L  Q+  +    +A G+P I I G EADD+I T   
Sbjct: 69  AKGKTFRDEIYAEYKAHRPPMPDDLRCQIEPLHAIIRALGLPLICISGVEADDVIGTLAQ 128

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE EG  V I + DKD+ QLV+    L +T+ +  +D+E V  K+G+ PE ++ L A+ 
Sbjct: 129 QAEAEGHDVLISTGDKDMAQLVTDKITLINTMTDTVMDVEGVHNKFGVGPELIIDLLAMM 188

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240
           GD +DNIPG+PG+G KTA  +LQ  G+LE I  +   +        K   + + E+ E A
Sbjct: 189 GDKVDNIPGLPGVGEKTALAMLQGIGSLEAIYQDVDAVAALGFRGAKTMPKKLAEHKEAA 248

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS  L  ++TDV +      L++ + +   L      LEF + +N V      D   I 
Sbjct: 249 FLSYTLATIKTDVELDQKPSELLIGEADRDALAKLYGDLEFRRWLNEV-----LDGGAIL 303

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P        +N                               S + P +           
Sbjct: 304 PA----GNGDNGA-----------------------------SAKAPAQ----------- 319

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              N   +  I+    +  W++KL      +    T ++D   ++ + ++ + ++     
Sbjct: 320 ---NGTEHELILTESQLDTWIEKLSQAELFAIDTETTSIDYMAAELVGLSFA-VEAGKGA 375

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              V   +    V   +D+         +L+ LK   E+    K+G N+KYD  VL +YG
Sbjct: 376 YLPVAHDYEGAPVQLDRDT---------VLAKLKPLLEDTAPRKVGQNLKYDMSVLAKYG 426

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           I++ G   D ML SY  +S    H++  +A K+L +     ++I          ++I   
Sbjct: 427 IALNGIAFDTMLESYCFNSTAGRHNMDDMALKYLGHKTIHFEDIAGKGAKQKTFNQIPLE 486

Query: 537 QVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E++++ L+L   L P+L  +     V+E+L++P++ ++S ME  G+ ID D L
Sbjct: 487 EAAPYAAEDADITLRLHQHLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQL 546

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            Q S+EI+  L SLE+  ++++GE FNL S KQL  I F KL +P   KT  G   T  +
Sbjct: 547 HQQSSEIATTLDSLEQQAHEIAGEVFNLGSTKQLQAIFFDKLGYPVLKKTPKGAPSTAEE 606

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++   D P+ K ILE R L+K+K+TY D LP  + K + RVHT Y  A T TGRL+S
Sbjct: 607 VLQELAL-DYPLPKIILEHRSLAKLKNTYTDKLPQLV-KPSGRVHTSYHQAVTATGRLSS 664

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T  G++IR+AFI+P   KL++ DYSQIELRI+AH+++   L + F    
Sbjct: 665 SDPNLQNIPIRTAEGRRIRQAFIAPEGYKLLAIDYSQIELRIMAHLSQDKGLLEAFAAGK 724

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH+  AAE+FGV+ + V+ + RR AK +NF +IYG+S F LA QL I R+EA +YI RY
Sbjct: 725 DIHKATAAEVFGVDFDSVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIGRAEAQEYIDRY 784

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           FHR+PG+ EY+++T+       YVET+ GRR+H  EIN+     +   ER AINAP+QG+
Sbjct: 785 FHRYPGVLEYMDRTRAQAHDKEYVETLMGRRLHLPEINARNKMRQQAAERTAINAPMQGT 844

Query: 896 AADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           AADI ++AM+ V   L +  +    +++Q+HDELVFEV E         +   M +A   
Sbjct: 845 AADIIKKAMLLVADYLSQQAEDEIHLIMQVHDELVFEVREGVAEQHKDALCELMSQAA-- 902

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L VPL     + +NW +
Sbjct: 903 --ELDVPLLAEGGLGDNWDQ 920


>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
 gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
          Length = 921

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 358/987 (36%), Positives = 536/987 (54%), Gaps = 89/987 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA+YA P L+    G    A+ G  NML  L+         SH AV
Sbjct: 6   ENPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLMSRYHP----SHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+   A G+P I I+G EADD+I 
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIAPLHRI-IHALGLPLISIEGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A  EG A  I + DKD+ QLV+    L +T+ +  +  E V  K+G+ PE ++  
Sbjct: 120 TIAKRASAEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVATKFGVGPELIIDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G++E +L +   + +      K     I++ 
Sbjct: 180 LALMGDKSDNIPGLPGVGEKTALAMLNGVGSVEKLLADPQSVLEVGFRGAKTMPAKIIDN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+  +LS +L  ++TDV +    + L ++  N   LI+    +EF + +  V        
Sbjct: 240 ADMLKLSYQLATIKTDVELDPDWDLLAVKPHNKDELIACYGEMEFKRWLAEV-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                        +NK           T +KTS            N+E       +E + 
Sbjct: 292 ------------LDNKA---------PTQVKTSS-----------NAESDEVMAPVEAIS 319

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I+   D+  W+ KL      +    T +++   +K + I       
Sbjct: 320 A---------KYHTILTLDDLDTWIAKLSQAKLIAIDTETTSLNYMDAKLVGI------- 363

Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               SF +E     ++ L+ H   D+  +  +    L  L+   E+++  K+G N+KYD 
Sbjct: 364 ----SFAIEAGEAAYLPLA-HDYLDAPSQIDMATA-LEKLRPLLESDNPAKVGQNLKYDI 417

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +    GI ++G   D ML SYV +S  S HD+  +A K+L +   + +++       + 
Sbjct: 418 SIFANVGIKLKGVHFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEDVAGKGAKQLT 477

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588
            ++I       +A E++++ L+L   L P+L  E +L  V+  L+ P+I V+S +E  G+
Sbjct: 478 FNQIDLDTAAPYAAEDADITLRLHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGV 537

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  LL Q S E+++ +  LE   Y+++GEKFNL SPKQL  + F KL +P   KT  G
Sbjct: 538 LIDPMLLSQQSDELAQKIDKLELEAYEIAGEKFNLGSPKQLQVLFFEKLAYPIIKKTPKG 597

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K IL  R L+K+KSTY D LP  +N  T RVHT Y  A+ 
Sbjct: 598 APSTAEEVLVELAL-DYPLPKIILAHRSLAKLKSTYTDKLPLMVNGTTGRVHTSYHQANA 656

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L 
Sbjct: 657 ATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDKGLL 716

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+FG + E+V+ + RR AK +NF +IYG+S F LA QL IPR+EA
Sbjct: 717 TAFAEGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEA 776

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF R+PG+ +Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAAI
Sbjct: 777 QTYIDTYFARYPGVLQYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAI 836

Query: 889 NAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI ++AMI++   ++ + +    M++Q+HDELVFEV E +  T    I   
Sbjct: 837 NAPMQGTAADIIKKAMINIANWIKTETQGEITMIMQVHDELVFEVDEAQAETLKAKICLL 896

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M +A     +L V L     + NNW E
Sbjct: 897 MAQAA----DLDVTLLAEAGIGNNWDE 919


>gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 933

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 346/986 (35%), Positives = 536/986 (54%), Gaps = 74/986 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +FLVD ++F++RA++A P+L+   DG PVNA+ G+  M+    Q  RKE    H   +FD
Sbjct: 1   MFLVDANNFLFRAYHALPMLT-APDGRPVNAVHGYVRMV----QAIRKEFAPQHLLAVFD 55

Query: 67  YPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                 +R E+Y +YKANRP  PE L PQ+PLVR AT A  IP +E   +EADD+IA Y 
Sbjct: 56  ASGSKGWRRELYAEYKANRPPPPEDLQPQIPLVREATDALSIPWLEDPRYEADDLIARYV 115

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
               +    V I+S+DKDLMQLV+        +  L+DT+K  ++    V+ K+G+ PEK
Sbjct: 116 QAGVEAKLEVVIVSSDKDLMQLVAGPDDVREGSVRLWDTMKNRRVGPAEVVAKFGVGPEK 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  L AL GDS DNIPG+ GIG KTA  LL+ YG+LE IL N  +IKQKKRREN+  YAE
Sbjct: 176 LGDLLALAGDSSDNIPGVKGIGPKTATSLLETYGDLEGILSNTDKIKQKKRRENLETYAE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            AR+SRKLV LRTD  +  P+E +  +      + +F   L F   +   A      +  
Sbjct: 236 DARMSRKLVALRTDYDLPRPIEDVADKGPKRATMEAFFTPLGFKATLTG-AVRAGGGSRR 294

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           + P  L     + K    E E+DR+                 +N+++             
Sbjct: 295 VAPRTLVETIAKIK----ELEVDREAV-------------EVLNADEA------------ 325

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                             +  ++ +       +F++     D   + PI +A++    K 
Sbjct: 326 --------------GVATLDAFLAQARAAEGLAFELELSGDDPLRADPIGLALAIPKAKA 371

Query: 419 DTSFKVE--TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +    +E   I++ ++  +  D   +     E+L+ +     +    K  H +K  ++VL
Sbjct: 372 EAPGALERAPIYLPMAHRSLSDGAVQQWKPSEVLAKVGPLLSDAKLPKYTHALKDQQVVL 431

Query: 477 HRYGISMRG---FEDIMLMSYVLDSGRSSHDIASIAQ---KWLSYTRKEILKSRKSSIPI 530
            R  +++       D +L SY LD  RS H++  +A+     L   R+ I+   K  +  
Sbjct: 432 SRADLNVEVRNVVGDTLLASYTLDPARSDHNLEGLAKDIGGRLVGDRESIVGKGKKRVGF 491

Query: 531 DKISDSQVQEHAIENSNVILQLW--LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           D+++ +     A E + +   L   ++   K   E+   +Y  ++ P+  V++++E  G+
Sbjct: 492 DQVAVAVAGPWAGERAGLAATLGPHMVAAAKAAGEQTQKLYAEVELPLARVLARLERRGV 551

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+  L++ + E+   + +L+  + + +G   + +SPKQLG +LF +   P+  KTKTG
Sbjct: 552 LLDEAELQRQNDELGGQIDALKSTLQEEAGYAVDPNSPKQLGKLLFEERGLPAKKKTKTG 611

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T AQ LE+++  D PI+K IL++R L+K+K+TY D+LP  +N  T R+HT +  A  
Sbjct: 612 -YSTDAQTLEELSLLD-PIVKVILDYRSLAKLKNTYLDTLPKLVNPNTGRLHTHFRQAVA 669

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIPI+T+ G++IRR F++P   +L++ DYSQIELR+LAH++K   L 
Sbjct: 670 ATGRLSSREPNLQNIPIRTEQGRRIRRGFVAPEGMQLVTLDYSQIELRVLAHLSKDPNLV 729

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F +  D+HR  AAE+F V   +V+ + RR AK +NF +IYG S F LA QL IP+  A
Sbjct: 730 KAFTDGADVHRRTAAEVFEVPEAEVTSEQRRVAKAVNFGVIYGQSAFGLARQLGIPQGRA 789

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YIK YF + PG+  Y+    +  +  G+ ETIFGRR    E+    +  R+  ER A 
Sbjct: 790 GKYIKAYFKKIPGVSSYMNALIDTAKDTGFAETIFGRRRRIPELRRRGAVARSYGERIAR 849

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AM+ V + L+D   A +MLL +HDEL+FE   +++     ++  +M
Sbjct: 850 NTPIQGSAADILKIAMVEVERLLDDKPWA-RMLLTVHDELIFECETDKVQELIGLVKPAM 908

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           EK+     +L VPL V      NW++
Sbjct: 909 EKSA----SLDVPLLVEGGAGANWED 930


>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
 gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
          Length = 905

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 347/980 (35%), Positives = 535/980 (54%), Gaps = 93/980 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+ + + E    + A IFD
Sbjct: 5   LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDHKAE----YAACIFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YP+YK++RP +PE L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 60  ARGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A +      + + DKDL QLV+    L +T+  E +D   V+ K+G+PP+++V    L 
Sbjct: 120 RAAEHDVHTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEPGVVNKFGVPPDRIVDYLMLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTA   L E+G+++ ++  A  IK      N+ E      L+R+L
Sbjct: 180 GDTVDNVPGVTKVGPKTAVKWLTEFGSIDKLIEGAETIKGVAG-NNLREAIPNFPLTRQL 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD-AANIEPVVLD 305
           + ++                                         YDCD   ++E V  D
Sbjct: 239 LTVK-----------------------------------------YDCDLTGHVESV--D 255

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP---QKLFLERLQKLSQYP 362
                 +  A  TE+      +T     L D T   ++E+ P    ++ ++    + Q P
Sbjct: 256 DLIPRERDTATLTELYERYGFRTW----LRDLTG--DAERVPTGDARIAVD----VPQAP 305

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
              D Y  I +  +   W ++L+     +    T ++D   ++ + +           S 
Sbjct: 306 TELD-YRIISDWAEFDAWFERLQNASLVALDTETTSLDQMQARLVGL-----------SL 353

Query: 423 KVE---TIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            VE     +I ++ H   D  G   L K E+L+ LK + E+    K+ H+ KYD  V   
Sbjct: 354 AVEPGVACYIPVA-HRGPD--GATQLPKAEVLARLKPWLEDASRAKLLHHAKYDAHVFAN 410

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
            GI++ G  +D ML +YVL+S R    +  +AQ++L  +    +++       I  D+++
Sbjct: 411 EGIALAGITDDTMLQAYVLESHRGV-GLNDLAQRYLGRSGISYEDLCGKGAKQIGFDEVA 469

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++  LQL  +LRP +   + L    +L+  +  V++ +E  G+++D + 
Sbjct: 470 VDKAGHYAAEDADFTLQLHHVLRPMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEE 529

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L + S ++ + +L LE+  Y+L+G+ FNL+SPKQLG+ILF +++ P   KT +G   T  
Sbjct: 530 LGRQSHKLGQEMLRLEQKAYELAGQPFNLNSPKQLGEILFDRMQLPVVRKTASGAPSTDE 589

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L ++   D P+ + +LE+R LSK+KSTY D LP  IN  T RVHT YS A+ +TGRLA
Sbjct: 590 DVLTKLAL-DYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTRYSQAAVITGRLA 648

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T+ G+++R AFI+     L+SADYSQIELRI+AH++    L   F   
Sbjct: 649 SSDPNLQNIPVRTEAGRRVREAFIAE-QGMLLSADYSQIELRIMAHVSDDANLQSAFAAG 707

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AAE+FGV +  VS   RR AK INF +IYG+  F LA+ L I R  A  YI R
Sbjct: 708 EDIHRATAAEVFGVALADVSTDQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDR 767

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y+E T+   R+ GYVET+FGRR+   EI       R   ERAAINAP+QG
Sbjct: 768 YFARYPGVAMYMENTRRLAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQG 827

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + AM++V   LE  KL T+M++Q+HDELV E P+ EI    +++  ++ +    
Sbjct: 828 TAADLIKLAMVAVQDWLEAEKLQTRMIMQVHDELVLEAPDNEI----EVVKEALPRLMCS 883

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              LRVPL   + +  NW++
Sbjct: 884 VAELRVPLVAEVGMGKNWEQ 903


>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
          Length = 924

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 346/981 (35%), Positives = 537/981 (54%), Gaps = 75/981 (7%)

Query: 5   NHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  +  YRA Y   + PL++ K  G   +A  GF   L KL++    E    + 
Sbjct: 2   QRLYLIDAMALAYRAHYVFISRPLVNSK--GQNTSAAYGFTTSLLKLIE----EHGMDYM 55

Query: 62  AVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           AV+FD      TFR  IY +YKA+R   PE LL  LP ++   +A  IP IE  G EADD
Sbjct: 56  AVVFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP 175
           +I T    AE  G  V I+S DKD +QL+SP   +Y   +  +    I IE   + +G+ 
Sbjct: 116 VIGTLARRAEAHGIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLITIETFRETYGLE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + + AL GD  DN+PG+PGIG KTA  L+Q+YG++EN+L +A  +K K+ RE +L 
Sbjct: 176 PHQFIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLN 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + E A LS++LV +RTDVP+ I  E       + PRL+   + LEF  L+ R+    +  
Sbjct: 236 HREEALLSKRLVTIRTDVPLRIRWEAFHRARPDLPRLLQIFQELEFDSLVRRIR---EGG 292

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            A I                    + R+  +  +           + +E  P+  F    
Sbjct: 293 LAGI--------------------VRREAALDEA-----------LEAEGEPEFDFGP-Y 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + L  Y      Y  + N + + + V +L+ +   +    T + +A  +  + IA S   
Sbjct: 321 EPLQVYDPEKADYRIVRNRQQLDELVARLDGLERLAIDTETTSTEAMWASLVGIAFS--- 377

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +    + V T   D             T T+ +L  L          K+G N+KYD +V
Sbjct: 378 WEKGQGYYVPTPLPD------------GTPTETVLERLAPILRRAQ-RKVGQNLKYDLVV 424

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L ++G+ +   + D M+  Y++ +    H++  +A+++L Y      E++ S +    + 
Sbjct: 425 LAQHGVEVPPPYFDTMVAHYLI-APEEPHNLDVLARQYLRYQMVAITELIGSGRDQKSMR 483

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +S  +V  +A E++++ LQL  +L  +L    L H+ E ++ P+I+V++ ME TGI ID
Sbjct: 484 DVSIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICID 543

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           + +L+++  ++   L  LE  IY+++G +FN+ SP+QL D+LF KL     A+T TG+  
Sbjct: 544 RTVLREIGKQLEAELHELEAKIYEVAGVEFNIGSPQQLADVLFKKLGLKPRARTSTGRPS 603

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    L+++    +P+   IL+WR L+K+KSTY D L   I+  T R+HT ++   T TG
Sbjct: 604 TKESVLQELAT-QHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATG 662

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S  PNLQNIP++T++G++IRRAF+  P  KL+SADY QIELRILA ++    L + F
Sbjct: 663 RLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AA +F V  E+V+P+ RR AK +N+ I YGIS + LA +LR    EA + 
Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQEL 782

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ Y   FPG+  Y+ +     RQ GYVET+ GRR +   INS   + R++ ER A+N P
Sbjct: 783 IEEYQRAFPGVTRYLHRVVEKARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMP 842

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+ AD+ + AM+ ++  L+      KMLLQ+HDELVFE+P EE+    Q++   M++A
Sbjct: 843 IQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEMPPEEVEPVRQLVEQEMKQA 902

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
            LP+    VP++V+I V +NW
Sbjct: 903 -LPREG--VPIEVDIGVGDNW 920


>gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 356/976 (36%), Positives = 540/976 (55%), Gaps = 92/976 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T   
Sbjct: 59  AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   AL 
Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ + + +E L  +  +   LI      EF  L+       D D ++I+ V    
Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           +  +   +AIE                                                 
Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +   + +LE   S +F   TD+++A+ +  + ++      K+  +F +  
Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNAYEANLVGLSFCA---KEGRAFYIPL 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               L V   Q   G       +L  LK  F +   +K+ HN K+D+ VL +Y I + G 
Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540
            +D M+M+YVL S    HD+ S++++ L     +YT   I  + K    +D++    V +
Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K+L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L +VF  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+VN+    +W +
Sbjct: 880 NVPLEVNVDSGKSWDQ 895


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 348/981 (35%), Positives = 538/981 (54%), Gaps = 74/981 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGSS+++RAF+  P L+    G    AI G  NML  L+    K+   +H AVIFD
Sbjct: 9   FILVDGSSYLFRAFHGLPPLTNSK-GQDTGAIYGVVNMLKSLI----KQYNPTHMAVIFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IY +YKANRP +PE L  Q+  +    +A G+P I   G EADD+I T   
Sbjct: 64  AKGKTFRDDIYKEYKANRPPMPEELRSQIEPLHTIIKAMGLPVIVESGVEADDVIGTLAK 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G    I + DKD+ QLV+    L +T+  + +D+E V  K+GIPPE ++   AL 
Sbjct: 124 HATEKGIDTLISTGDKDMAQLVNKHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFLALK 183

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETA 240
           GD +DNIPG+PG+G K+A  LL   G ++ I  N  +I        K     + EY E A
Sbjct: 184 GDKVDNIPGVPGVGDKSAQALLNGIGGIDEIYKNLDKIADLSFRGSKSMAAKMEEYEEQA 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           RLS  L  +  D+ +   +E L+    +  +L       EF +             A + 
Sbjct: 244 RLSYTLATISIDLELDYDVETLMPCQADNEQLRDLFAEYEFKRW-----------HAEVS 292

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            ++   +T+               T  TS  SS S QTS                +  + 
Sbjct: 293 ALLAGGDTSS-------------ATESTSAESSDSTQTS----------------ESATS 323

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I+   Y  +++ +    W+ KL+     +F   T +++   ++ + ++    +     
Sbjct: 324 GDIDKSKYETVLDEETFNTWLGKLQKAQLIAFDTETTSLNYMDAELVGVSFCIEEG---- 379

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               E  ++ ++ H   D+  +  L++E +L  LK   E+ + +K+G +IKYDK VL  Y
Sbjct: 380 ----EAAYVPVA-HDYPDAPTQ--LSREFVLDALKPILESSNIIKVGQHIKYDKNVLANY 432

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
            I++ G   D ML SYVL+S    HD+ S+A  +L +     ++I       +  ++I+ 
Sbjct: 433 DITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEDIAGKGAKQLTFNQIAL 492

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            +   +A E++++ L+L   +  KL  + +L ++   ++ P+  V+S+ME  G+ ID   
Sbjct: 493 EEAGPYAAEDADITLRLHNTIWAKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQR 552

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L Q S +++  +  LE+ +++ +GE FNL S KQL  ILF K+  P   KT  G   +T+
Sbjct: 553 LSQQSQDLAARIAELEKEVHEEAGEPFNLGSTKQLQHILFEKMSLPIIKKTPKGA-PSTS 611

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +D+ Q    + P+ K I+E+R L+K+K+TY D LP  IN RT RVHT Y  A T TGRL+
Sbjct: 612 EDVLQELALEYPLPKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITATGRLS 671

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+ + G+++R+AF+     K ++ADYSQIELRI+AH++    L   F + 
Sbjct: 672 STDPNLQNIPIRNEEGRRVRQAFVPRKGNKFVAADYSQIELRIMAHLSGDKGLLDAFAHG 731

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH+  A+E+FGV +++V+ + RR AK INF +IYG+S F LA QL IPR+EA  Y+  
Sbjct: 732 KDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIPRNEAQKYMDL 791

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+ EY++ T+   ++ GYVET+FGRR++  +I +   + R   ERAAINAP+QG
Sbjct: 792 YFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQG 851

Query: 895 SAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           +AADI + AMI V   +  +      M++Q+HDELVFE+ E+++ +  + I   ME A  
Sbjct: 852 TAADIIKMAMIKVDDWISKNAADDVTMMMQVHDELVFEIKEDKVDSYVKTINTLMESAA- 910

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L VPL V   V  NW E
Sbjct: 911 ---TLNVPLVVEAGVGENWDE 928


>gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275]
          Length = 931

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 356/986 (36%), Positives = 535/986 (54%), Gaps = 69/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R    +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP+ I+ R  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPDMISPRDNRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +PP   ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V + L    L +K+++Q+HDELV EV E E+    + +   M
Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQIM 905

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K     ++  VPL   + V  NW+E
Sbjct: 906 AKVGGGLLD--VPLVAEVGVGENWEE 929


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 897

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 356/976 (36%), Positives = 539/976 (55%), Gaps = 92/976 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T   
Sbjct: 59  AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   AL 
Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ + + +E L  +  +   LI      EF  L+       D D ++I+ V    
Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           +  +   +AIE                                                 
Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +   + +LE   S +F   TD+++ + +  + ++      K+  +F +  
Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               L V   Q   G       +L  LK  F +   +K+ HN K+D+ VL +Y I + G 
Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540
            +D M+M+YVL S    HDI S++++ L     +YT   I  + K    +D++    V +
Sbjct: 409 VDDTMIMAYVLKSS-GKHDIDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K+L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L +VF  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+VN+    +W +
Sbjct: 880 NVPLEVNVDSGKSWDQ 895


>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
 gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
          Length = 933

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 361/989 (36%), Positives = 537/989 (54%), Gaps = 84/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A   LS   DG P  A+ G  NML +L    R + +  + AV+FD
Sbjct: 6   LLLVDGSSYLYRAYHAMAQLSAP-DGAPTGALYGVLNMLRRL----RADYVHDYCAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122
                FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   EADD+I 
Sbjct: 61  AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V  K+G+ P+++   
Sbjct: 117 TLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+        L
Sbjct: 177 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLQAALPQLPL 235

Query: 243 SRKLVMLRTDV----PITIPLEHLILEDCNGPRLISFLKALEFTKLINRV------ATTY 292
           S  LV ++TDV     ++  LE L        +L    K   F   +         A   
Sbjct: 236 SYDLVTIKTDVDLHAELSDGLESLRRTSPKWSQLAVDFKRWGFRTWLKEAESRMHEAAEG 295

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D   ++       +   EN G + E  I+     +   + ++           T +  F 
Sbjct: 296 DLFGSDTIGEQAALGLPENGGTSSEKIIEHAPAPEKLDYQAV-----------TTEAQFA 344

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
             L +LSQ                        +TIG       T ++DA ++  + I+I+
Sbjct: 345 ALLDRLSQ-----------------------ADTIG---IDTETTSLDAMNASLVGISIA 378

Query: 413 TLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                    F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KY
Sbjct: 379 ---------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPVLKKIGQNLKY 427

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
           D+ V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       
Sbjct: 428 DQHVFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQ 486

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           I    ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G
Sbjct: 487 IGFADVAIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNG 545

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KT 645
           +QID+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT
Sbjct: 546 VQIDRAELARQSAELGAELMKLEQEAYAAAGQLFNLNSPKQLQEILFDKMGIPTKGLKKT 605

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             G   T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ 
Sbjct: 606 AKGGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQ 664

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++   
Sbjct: 665 AVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDK 724

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F+N  D+H   AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I  
Sbjct: 725 TLIAAFQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDN 784

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ER
Sbjct: 785 LSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAER 844

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QG+A+D+ +RAMI V + L D  L +K+++Q+HDELV EVPE E+      + 
Sbjct: 845 AAINAPMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPESELDLVKTNLP 904

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M  A + K  L VPL   + V  NW+E
Sbjct: 905 ELM--ADVGKGLLNVPLVAEVGVGENWEE 931


>gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 350/987 (35%), Positives = 533/987 (54%), Gaps = 86/987 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGSS+++RAF+  P L+    G    AI G  NML  L+    K+   +H AVIFD
Sbjct: 9   FILVDGSSYLFRAFHGLPPLTNSK-GQDTGAIYGVVNMLKSLI----KQYNPTHMAVIFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IY +YKANRP +P+ L  Q+  +    +A G+P I   G EADD+I T   
Sbjct: 64  AKGKTFRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVESGVEADDVIGTLAK 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G    I + DKD+ QLV+    L +T+  + +D+E V  K+GIPPE ++   AL 
Sbjct: 124 HATEKGIDTLISTGDKDMAQLVNEHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFLALK 183

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240
           GD +DNIPG+PG+G K+A  LL   G +++I  N  +I        K     + EY E A
Sbjct: 184 GDKVDNIPGVPGVGDKSAQALLNGIGGIDDIYKNLDKIADLSFRGSKSMAAKMQEYEEQA 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTYDCDAA 297
           RLS  L  +  D+ +   +E L+    +  +L       EF +    ++ +    D   A
Sbjct: 244 RLSYTLATISIDLDLDYDVEALMPCQADNEQLRDLFAEYEFKRWHAEVSALIAGGDTSGA 303

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N        NT E K                                        E  ++
Sbjct: 304 NA-------NTNEEK------------------------------------SDSAEESEQ 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  ++  +    WV KLE     +F   T +++   ++ + ++    +  
Sbjct: 321 SESVEIDKSKYETVLEEEHFNAWVAKLEKAELIAFDTETTSLNYMDAELVGVSFCIEEG- 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  E  ++ ++ H   D+  +  L++E +L  LK   E++  +K+G +IKYDK VL
Sbjct: 380 -------EAAYVPVA-HDYPDAPAQ--LSREFVLDALKPILESDTVIKVGQHIKYDKNVL 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
             Y I++ G   D ML SYVL+S    HD+ S+A  +L +     +EI       +  ++
Sbjct: 430 ANYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEEIAGKGAKQLTFNQ 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           IS  +   +A E++++ L+L   +  KL  + +L ++   ++ P+  V+S+ME  G+ ID
Sbjct: 490 ISLEEAGPYAAEDADITLRLHNAIWTKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLID 549

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q S +++  +  LE  +++ +GE FNL S KQL  +LF K+  P   KT  G   
Sbjct: 550 SQRLRQQSQDLATRIAELESEVHEEAGEPFNLGSTKQLQHVLFEKMSLPIIKKTPKGA-P 608

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T++D+ Q    + P+ K I+E+R L+K+K+TY D LP  IN RT RVHT Y  A T TG
Sbjct: 609 STSEDVLQELALEYPLPKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAVTATG 668

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+ + G+++R+AF+     K ++ADYSQIELRI+AH++    L   F
Sbjct: 669 RLSSTDPNLQNIPIRNEEGRRVRQAFVPREGNKFVAADYSQIELRIMAHLSGDKGLLDAF 728

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH+  AAE+FGV +++V+ + RR AK INF +IYG+S F L+ QL IPR+EA  Y
Sbjct: 729 AHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLSKQLNIPRNEAQKY 788

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ EY++ T+   ++ GYVET+FGRR++  +I +   + R   ERAAINAP
Sbjct: 789 MDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAP 848

Query: 892 IQGSAADITRRAMISV----HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +QG+AADI + AMI V     K+  D      M++Q+HDELVFE+ E+++ T    I   
Sbjct: 849 MQGTAADIIKMAMIKVDDWIRKNASDD---VTMMMQVHDELVFEIREDKVETYVSTITAL 905

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A      L VPL V   V  NW E
Sbjct: 906 MESAA----TLNVPLVVEAGVGENWDE 928


>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
          Length = 924

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 348/979 (35%), Positives = 533/979 (54%), Gaps = 75/979 (7%)

Query: 7   LFLVDGSSFIYRA---FYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  +  YRA   F + PL++ K  G   +A  GF   L KL++    E    + AV
Sbjct: 4   LYLIDAMALAYRAQYVFISRPLVNSK--GQNTSAAYGFTTSLLKLIE----EHGMDYMAV 57

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      TFR  IY +YKA+R   PE LL  LP ++   +A  IP IE  G EADD+I
Sbjct: 58  VFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPE 177
            T    AE  G  V I+S DKD +QL+SP   +Y   +  +    I IE   + +G+ P 
Sbjct: 118 GTLARRAEAHGIDVVIVSPDKDFLQLLSPHVSIYKPARRGETFDLITIETFRETYGLEPH 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + + AL GD  DN+PG+PGIG KTA  L+Q+YG++EN+L +A  +K K+ RE +L + 
Sbjct: 178 QFIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLNHR 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS++LV +RTDVP+ I  E       + PRL+   + LEF  L+ R+         
Sbjct: 238 EEALLSKRLVTIRTDVPLRIRWEAFHRARPDLPRLLQIFQELEFDSLVRRIREGGLAGIV 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N E  +       ++ +  ETE + D       F                        + 
Sbjct: 298 NGEAAL-------DEALEAETEPEFD-------FGPY---------------------EP 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           L  Y      Y  + N + + + V  L+     +    T + +A  +  + IA S    +
Sbjct: 323 LQVYDPEKADYRIVRNRQQLDELVAHLDGFERLAIDTETTSTEAMWASLVGIAFS---WE 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
               + V T   D             T T+ +L  L          K+G N+KYD +VL 
Sbjct: 380 KGQGYYVPTPLPD------------GTPTETVLERLAPILRRAQ-RKVGQNLKYDLVVLA 426

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           R+G+ +   + D M+  Y++ +    H++  +A+++L Y   +  E++ S +    +  +
Sbjct: 427 RHGVQVPPPYFDTMVAHYLI-APEEPHNLDVLARQYLRYQMVSITELIGSGRDQKSMRDV 485

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S  +V  +A E++++ LQL  +L  +L    L H+ E ++ P+I+V++ ME TGI ID+ 
Sbjct: 486 SIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRA 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L+++  ++   L  LE  IY+++G +FN+ SP+QL D+LF KL     A+T TG+  T 
Sbjct: 546 VLREIGKQLEAELHELEVKIYEVAGVEFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTK 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              L+++    +P+   IL+WR L+K+KSTY D L   I+  T R+HT ++   T TGRL
Sbjct: 606 ESVLQELAT-QHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S  PNLQNIP++T++G++IRRAF+  P  KL+SADY QIELRILA ++    L + F  
Sbjct: 665 SSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFLE 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA +F V  E+V+P+ RR AK +N+ I YGIS + LA +LR    EA + I+
Sbjct: 725 GQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQELIE 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            Y   FPG+  Y+ +     RQ GYVET+ GRR +   INS   + R++ ER A+N PIQ
Sbjct: 785 EYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMPIQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+ AD+ + AM+ ++  L+      KMLLQ+HDELVFE+P EE+    Q++   M++A L
Sbjct: 845 GTQADMIKLAMVHIYHRLKREGYRAKMLLQVHDELVFEMPPEEVEPVRQLVEQEMKQA-L 903

Query: 954 PKINLRVPLKVNIKVSNNW 972
           P     VP++V+I V +NW
Sbjct: 904 PLEG--VPIEVDIGVGDNW 920


>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
 gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
          Length = 924

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 350/981 (35%), Positives = 533/981 (54%), Gaps = 75/981 (7%)

Query: 5   NHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  +  YRA Y   + PL++ K  G   +A  GF   L KL++    E    + 
Sbjct: 2   QRLYLIDAMALAYRAHYVFISRPLVNSK--GQNTSAAYGFTTSLLKLIE----EHGMDYM 55

Query: 62  AVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           AV+FD      TFR  IY +YKA+R   PE LL  LP ++   +A  IP IE  G EADD
Sbjct: 56  AVVFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP 175
           +I T    AE  G  V I+S DKD +QL+SP   +Y   +  +    I IE   + +G+ 
Sbjct: 116 VIGTLARRAEAHGIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLITIETFRETYGLE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + + AL GD  DN+PG+PGIG KTA  L+Q+YG++EN+L +A  +K K+ RE +L 
Sbjct: 176 PHQFIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLN 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + E A LS++LV +RTDVP+ I  E       + PRL+   + LEF  L+ R+       
Sbjct: 236 HREEALLSKRLVTIRTDVPLRIRWEAFHRARPDLPRLLQIFQELEFDSLVRRIREGGLAG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N E   LD    E +G   E E D         F                        
Sbjct: 296 IVNGE-AALD-EALEAEG---EPEFD---------FGPY--------------------- 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + L  Y      Y  + N + + + V +L+ +   +    T + +A  +  + IA S   
Sbjct: 321 EPLQVYDPEKADYRIVRNRQQLDELVARLDGLERLAIDTETTSTEAMWASLVGIAFS--- 377

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +    + V T   D             T T+ +L  L          K+G N+KYD +V
Sbjct: 378 WEKGQGYYVPTPLPD------------GTPTETVLERLAPILRRAQ-RKVGQNLKYDLVV 424

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L ++G+ +   + D M+  Y++ +    H++  +A+++L Y      E++ S +    + 
Sbjct: 425 LAQHGVEVPPPYFDTMVAHYLI-APEEPHNLDVLARQYLRYQMVAITELIGSGRDQKSMR 483

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +S  +V  +A E++++ LQL  +L  +L    L H+ E ++ P+I+V++ ME TGI ID
Sbjct: 484 DVSIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICID 543

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           + +L+++  ++   L  LE  IY+++G +FN+ SP+QL D+LF KL     A+T TG+  
Sbjct: 544 RTVLREIGKQLEAELHELEAKIYEVAGVEFNIGSPQQLADVLFKKLGLKPRARTSTGRPS 603

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    L+++    +P+   IL+WR L+K+KSTY D L   I+  T R+HT ++   T TG
Sbjct: 604 TKESVLQELAT-QHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATG 662

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S  PNLQNIP++T++G++IRRAF+  P  KL+SADY QIELRILA ++    L + F
Sbjct: 663 RLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AA +F V  E+V+P+ RR AK +N+ I YGIS + LA +LR    EA + 
Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQEL 782

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ Y   FPG+  Y+ +     RQ GYVET+ GRR +   INS   + R++ ER A+N P
Sbjct: 783 IEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMP 842

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+ AD+ + AM+ ++  L+      KMLLQ+HDELVFE+P EE+    Q++   M++A
Sbjct: 843 IQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEMPPEEVEPVRQLVEQEMKQA 902

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
            LP     VP++V+I V +NW
Sbjct: 903 -LPLEG--VPIEVDIGVGDNW 920


>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
 gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
          Length = 902

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 356/984 (36%), Positives = 551/984 (55%), Gaps = 115/984 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+++RA+YA P L+ +  G P  A+ G  NML KL+   + +    + AV+FD
Sbjct: 16  LILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVAVVFD 70

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+++Y  YKANR ++P  L  Q+ PL  +  +A G P I  +G+EADD+IAT  
Sbjct: 71  PKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEI-IRALGFPLIIKEGYEADDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A+++G  V + + DKDL Q+V+    L +T+ +  ++ + V++K+G+PPEK++    L
Sbjct: 130 KKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTL 189

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
           TGD+ DNIPG+P +G KTA   L +Y ++EN++ +A  IK K              +   
Sbjct: 190 TGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKGK--------------VGEN 235

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L     D+P                             L+ R+ T           V+ D
Sbjct: 236 LRACIDDLP-----------------------------LMRRLVT-----------VISD 255

Query: 306 INTTENKGIAIETEIDRDTTIK---TSQFSS-----LSDQTSKINSEQTPQKLFLERLQK 357
           +   EN    I+TE +R+  I+     +F S     L++Q  K+ + Q            
Sbjct: 256 LPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQDKKVAAFQ------------ 303

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I + K  ++W++KL      +F   T   +A  +K + ++ +     
Sbjct: 304 ----------YATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH- 352

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL--TKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  E  ++ L      D TG       +E+L  LK   E+ +   I  N+KYD  V
Sbjct: 353 -------EAAYVPLG----HDYTGAPAQLDKEEVLRKLKPLLEDPNKTIICQNLKYDAEV 401

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L + G+++R    D +L SYVL+S  + HD+ ++A K+L       +++       I  +
Sbjct: 402 LAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFN 461

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590
            ++  +   +A E+++V LQL   L P +  EK L  V+E+++ P++ ++ QME+ G+ +
Sbjct: 462 HVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLV 521

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L+  S E+S  +  LE+  Y L+G +FNLSSPKQL  IL+ +LK P   KT  GQ 
Sbjct: 522 DTAMLQAQSIELSGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ- 580

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA+++ Q    D P+ K ILE R L+K+K+TY D LP  ++  ++R+HT Y+   T T
Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIPI+T+ G+KIRRAFI+PP  ++++ADYSQ+ELRI+AHI+K   L + 
Sbjct: 641 GRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKA 700

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIHR  AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L  QL I R  A +
Sbjct: 701 FDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQE 760

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF R+P +HEY++K +      GYVET+FGRR++  +I++     R   ERAAINA
Sbjct: 761 YIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINA 820

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI + AMI V   L+ + +   +++Q+HDELVFEV E+++      I  +ME+
Sbjct: 821 PMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEE 880

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + L VPL V++ V  NW E
Sbjct: 881 A----VALSVPLVVDVGVGGNWDE 900


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 897

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 355/976 (36%), Positives = 539/976 (55%), Gaps = 92/976 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNNQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T   
Sbjct: 59  AKGKSFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   AL 
Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ + + +E L  +  +   LI      EF  L+       D D ++I+ V    
Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           +  +   +AIE                                                 
Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +   + +LE   S  F   TD+++ + +  + ++      K+  +F +  
Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFVFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               L V   Q   G       +L  LK  F +   +K+ HN K+D+ VL +Y I + G 
Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540
            +D M+M+YVL S    HD+ S++++ L     +YT   I  + K    +D++    V +
Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K+L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTTILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L +VF  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+VN+    +W +
Sbjct: 880 NVPLEVNVDSGKSWDQ 895


>gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
          Length = 937

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 361/993 (36%), Positives = 542/993 (54%), Gaps = 77/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMAQLTAP-DGAPTGAMYGVLNMLRRL----RADYVHDY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 56  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----IGWPVLVIPQVE 111

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V  K+G+ P
Sbjct: 112 ADDVIGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRP 171

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+   
Sbjct: 172 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLRAA 230

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +   LS  LV ++TDV +     H  L D                + + R A  +    
Sbjct: 231 LQRLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 267

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E           F S S  + + +N+E  P     E+ 
Sbjct: 268 ---AQLVVDFKRWGFRTWLKEAESRMHEAADGDLFGSDSIGEQAALNAE-VPS----EKQ 319

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            +L+  P   D Y  +     +   + KL    +      T ++DA ++  + I+I+   
Sbjct: 320 PELAPTPEKLD-YQAVTTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIA--- 375

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E I+I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 376 ------FQAGEAIYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 427

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 428 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 486

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 487 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 545

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 546 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 606 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 665 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 725 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 785 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941
           NAP+QG+A+D+ +RAMI V + L        D  L +K+++Q+HDELV EV E E+    
Sbjct: 845 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 904

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +   M K  +    L VPL   + V  NW+E
Sbjct: 905 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 935


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 897

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 355/976 (36%), Positives = 539/976 (55%), Gaps = 92/976 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T   
Sbjct: 59  AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   AL 
Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ + + +E L  +  +   LI      EF  L+       D D ++I+ V    
Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           +  +   +AIE                                                 
Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +   + +LE   S +F   TD+++ + +  + ++      K+  +F +  
Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               L V   Q   G       +L  LK  F +   +K+ HN K+D+ VL +Y I + G 
Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540
            +D M+M+YVL S    HD+ S++++ L     +YT   I  + K    +D++    V +
Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K+L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L +VF  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+VN+    +W +
Sbjct: 880 NVPLEVNVDSGKSWDQ 895


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 357/988 (36%), Positives = 555/988 (56%), Gaps = 91/988 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  G+  +AI GF N L  +L    K    +H AV
Sbjct: 3   LFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KRENPTHIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD+I T
Sbjct: 57  AFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179
            +  AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+   E++
Sbjct: 117 VSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237
           + L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K  QKK+ E   E A
Sbjct: 177 IDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE---ENA 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E    S+ L  ++TDVPI       + E  N  RL      LEF   IN++++     AA
Sbjct: 234 EQIHFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE-PVKAA 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL----E 353
              PV  D+        AI T      + +  + S L+D  S      TP   +L    E
Sbjct: 293 PKGPVQGDL-------FAIFT----PESTEEPKKSILTDLKS------TPHNYYLTDTEE 335

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           +   L+++ +  + +                      +F   TD +D   +  + ++ + 
Sbjct: 336 KQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLVGMSFAV 373

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         E  ++ +  ++ + +        +++       +N   LKIG NIK+D 
Sbjct: 374 KEN--------EAWYVPVPANSVEAA--------KVVERFSPALQNPKSLKIGQNIKFDI 417

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           LVL +Y + + G   D M+  Y+L+     H +  +A+ +L Y     +E++  + K+ +
Sbjct: 418 LVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQL 476

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +   Q+ E+A E+++V L+L     P+L  E L  ++  ++ P+I V+ +ME TG+
Sbjct: 477 SMRNVPVEQIAEYAAEDADVTLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGV 536

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D   LKQ S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK    AK TKT
Sbjct: 537 TLDTVALKQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKT 596

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T+   LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A 
Sbjct: 597 GGYSTSEDVLEKLRS-KHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV 655

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITP 766
           T TGRL+S  PNLQNIP++ DLG++IR+AFI      L  SADYSQIELRI+AH++    
Sbjct: 656 TSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPH 715

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F++  DIH   AA+I+G+ +EKV+  MRR AKT NF IIYGIS F LA +L IPRS
Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRS 775

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           E+ + I  YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER 
Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERN 835

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM+ +++  E+  L +KM+LQ+HDEL F + +EE     +I++ 
Sbjct: 836 AINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNIYKEEAEEVKKIVLE 895

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME      + L+VPL  +     NW E
Sbjct: 896 EMENV----MKLQVPLIADCGEGENWLE 919


>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
 gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
          Length = 947

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 342/985 (34%), Positives = 532/985 (54%), Gaps = 55/985 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L L+DGSS++YRA++A P L R   G P +   G    +  +LQ  RKE  A +
Sbjct: 1   MSNSKTLVLIDGSSYLYRAYHAMPDL-RAEPGNPESPATGAIRGMINMLQAIRKEVAADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
              +FD    TFR+ +YP+YKA+R  +P+ L  Q+  +    +  G P + IQG EADD+
Sbjct: 60  AVCVFDTSGPTFRDTLYPEYKAHRSPMPDDLRSQIEPIHEVVRLLGWPVLAIQGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +G  V I S DKDL QLV     + DT+  ++ D+  V  ++G+PP +M+
Sbjct: 120 IGTLAKTAAAQGVNVVISSGDKDLSQLVDSHIMVMDTMSGKRRDVAGVTAEFGVPPTQMI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GD++DN+PG+  +G KTA   L E+G+L+ ++  A  IK     +N+ +   + 
Sbjct: 180 DYQALVGDAVDNVPGVSKVGPKTAVKWLAEHGSLDGLIAAADGIKGVAG-QNLRDAIASG 238

Query: 241 RL--SRKLVMLRTDVPITIPLEHLILEDCNGPR------LISFLKALEFTKLINRVATTY 292
           +L  SR+LV ++TD  ++  +  L + D   PR      L  F +   F  L   +    
Sbjct: 239 QLALSRQLVTMKTDCDLSAEVPTLPVLDALAPREPDTAPLRDFYERYGFKGLARMLG--- 295

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
               A  EP  L+      K  A +   D+ T    +Q  + SD  +             
Sbjct: 296 ---GAAPEPDALEAVKAGRK-PAAKPRADQSTGDMFAQEQAESDDATT------------ 339

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
              + + Q P++   Y  ++  +   QW+ K+      +    T ++D   ++ + I++S
Sbjct: 340 -EAEAVQQRPLD---YDVVLTWEAFDQWLAKINAAELTALDTETTSLDEMRAEIVGISLS 395

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                          +I L  H   D+  +     E+L  LK + E+    K+G ++KYD
Sbjct: 396 VEPGA--------AAYIPLR-HAGPDAP-EQLPADEVLQRLKPWLEDAARPKLGQHVKYD 445

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528
           + V    GI + G+  D ML SYVL+  R  H +AS+A +  + T    +++       I
Sbjct: 446 RHVFANAGIEVHGYVHDTMLQSYVLEVHRP-HGLASLALRHTNRTGISYEDLCGKGAHQI 504

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
           P  ++   +   +A E+++  L +  +L P+L   + L  VYE L+    + + ++E  G
Sbjct: 505 PFAQVPVDKAAAYACEDADQTLDVHRVLWPQLQANDGLRGVYE-LEIATSEALFRIERNG 563

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID   L + S ++ + ++ LE+  YD++G+ FNL+SPKQLG+I F KL  P   KT T
Sbjct: 564 VLIDAATLARQSNDLGQRIVQLEQEAYDIAGQPFNLASPKQLGEIFFDKLGMPVVKKTAT 623

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   D P+   +LE R LSK+K TY D L      RT RVHT Y+ A 
Sbjct: 624 GARSTDEEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQLALPRTGRVHTHYAQAV 682

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRL+S +PNLQNIPI+T  G+++R AFI+ P   + SADYSQIELRI+AH++    L
Sbjct: 683 AVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAAPGHVIASADYSQIELRIMAHLSGDESL 742

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F    D+HR  A+E+F V +E+VS + RR+AK INF +IYG+S F LA  L I    
Sbjct: 743 LRAFHEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKA 802

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA YI RYF R+PG+  Y+++T  F R +GYVET+FGRR++  +IN      +   ER A
Sbjct: 803 AAAYIDRYFQRYPGVKRYMDETVEFARDHGYVETVFGRRLYLVDINGGSGPRKKAAERQA 862

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AAD+ ++AM++V   L+  +   ++++Q+HDELVFE+PE E    S  +   
Sbjct: 863 INAPMQGTAADLIKKAMVAVQAELDARQSEVRVIMQVHDELVFELPEGE----SDWVRTE 918

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           + +      +L+VPL   + +  NW
Sbjct: 919 IPRLMAGVADLKVPLLAEVGLGPNW 943


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 352/976 (36%), Positives = 539/976 (55%), Gaps = 92/976 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T   
Sbjct: 59  AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+G+ + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   AL 
Sbjct: 119 NLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ + + +E L  +  +   LI      EF  L+       D D ++I+ V    
Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           +  +   +AIE                                                 
Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +   + +LE   S +F   TD+++ + +  + ++      K+  +F +  
Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               L V    +        + +L  LK  F +   +K+ HN K+D+ VL +Y I + G 
Sbjct: 356 QHRYLGVPQQLE-------LEFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540
            +D M+M+YVL S    HD+ S++++ L     +YT   I  + K    +D++    V +
Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K+L+ +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNYFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++F LSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFKLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+VN+    +W +
Sbjct: 880 NVPLEVNVDSGKSWDQ 895


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 349/984 (35%), Positives = 544/984 (55%), Gaps = 76/984 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + I+R +YA    P ++ K  G+  +AI GF N L +++   RKE      AV
Sbjct: 4   LFLLDAYALIFRGYYAFIKNPRINSK--GMNTSAIVGFMNSLLEVI---RKEQ-PHLLAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD      R  I+  YKANR + PE +   +P +    +A  IP IE +G+EADDII T
Sbjct: 58  CFDKGGSQQRLAIFDQYKANREETPEAIRFAIPYIHQILKAMQIPIIEKEGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178
               AEK+G+ V +++ DKD  QLVSP   +Y   +  K      +E V + +G+  PE+
Sbjct: 118 LAKQAEKQGYTVYMVTPDKDYGQLVSPNIFMYKPARGGKDTEIWGVEEVKENFGVDTPEQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L  + GD++DNIPG+PG+G KTA  LL+E+G++EN+L N  ++K  K RENI    +
Sbjct: 178 VIDLLGMMGDAVDNIPGLPGVGEKTAQKLLKEFGSMENLLANTDKLK-GKLRENIQANKD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS+ L  +  DVP++   +   L       +I     LEF  ++  +   +  +   
Sbjct: 237 KGILSKTLARIILDVPVSFDEKDFELSSPKMEEIIPLFDQLEFRTMLTTLQKAFTKEETQ 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                +    T +  I   T  D ++                           ++RL+ +
Sbjct: 297 PNLFSIGQKATNSSMITNPTLFDMES---------------------------IKRLKTI 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            + P     Y  +    +++  + +L       F   T +++   ++ + +A+S    K 
Sbjct: 330 KEVP---HEYQLLTTQTEVEALLPELLAQKEICFDTETTSLNEMEAQIVGLALSYEIHKG 386

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 E                  +L K+    LK FFENE  LKIG N+KYD  +L  
Sbjct: 387 YYILFPEDF----------------SLAKQWFLLLKPFFENESILKIGQNLKYDFKILAN 430

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPIDKI 533
           YGI ++G F D M+  Y+L+     H++  +++ +L Y+       I K  K  + +  +
Sbjct: 431 YGIEVKGEFFDTMIAHYLLNPDMR-HNMDLLSEAYLGYSPISIETLIGKKGKGQLTMRAV 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                +E+A+E+++V LQL  +  P L  +++L ++ +++ P+++V++QME  GI++D  
Sbjct: 490 PAELQKEYAVEDTDVTLQLKHVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTH 549

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF-TKLKFPSGAKTKTGQWKT 652
            L Q+S EI+ +L+ LE+ I+  + E FNLSSPKQLGDILF          KTKTGQ+ T
Sbjct: 550 FLAQLSKEIAADLIGLEKTIFSQAEESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYAT 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++    + I+ N+LE+R L K++STY ++LP  +N  T R+HT +  A T TGR
Sbjct: 610 SEEVLSEL-ASKHEIVANVLEFRALQKLQSTYIEALPREVNPHTGRIHTTFMQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQV 770
           L+S +PNLQNIPI+T  G +IR+AF+ P  +   L+SADYSQIELRI+A +++   + + 
Sbjct: 669 LSSNQPNLQNIPIRTPRGSQIRKAFV-PRNEDYTLLSADYSQIELRIIAALSEEDHMIEA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AA++FGV +E V+ + R HAKT+NF IIYG+S   L+ Q  + RS++ +
Sbjct: 728 FLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSAIGLSQQTSLSRSQSKE 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  Y+  +P +  YIEK   F R++GYV+TI GRR +  ++ S    +R   ER A+NA
Sbjct: 788 LIDTYYQTYPKLKTYIEKQIFFAREHGYVQTILGRRRYLPDVYSRNQVVRGAAERNAVNA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AM+ + + ++   LAT+MLLQ+HDEL+F+VP++E+  A  +I   ME 
Sbjct: 848 PIQGSAADIIKIAMVRIAQRIQKEGLATRMLLQVHDELLFDVPKKELEVAKALIREEMEN 907

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L VPL V I   NNW E
Sbjct: 908 AY----TLIVPLIVEIGTGNNWLE 927


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 352/976 (36%), Positives = 540/976 (55%), Gaps = 92/976 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T   
Sbjct: 59  AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+G+ + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +++   AL 
Sbjct: 119 KLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDTSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ + + +E L  +  +   LI      EF  L+       D D ++I+ V    
Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           +  +   +AIE                                                 
Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +   + +LE   S +F   TD+++ + +  + ++      K+  +F +  
Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               L V   Q   G       +L  LK+ F +   +K+ HN K+D+ VL +Y I + G 
Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540
            +D M+M+YVL S    HD+ S++++ L     +YT   I  + K    +D++    V +
Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYT--AIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K+L+ +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
             +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 VSLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+VN+    +W +
Sbjct: 880 NVPLEVNVDSGKSWDQ 895


>gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
 gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
          Length = 926

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 354/979 (36%), Positives = 547/979 (55%), Gaps = 79/979 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAFYA   LS   DG P NA+ G   ML  L    R E  A + AV+FD
Sbjct: 14  LLLVDGSSYLYRAFYALTHLSAP-DGTPTNAVYGVLKMLKSL----RAEQPADYCAVVFD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ ++PDYKA RP +P+ L PQ  ++    +  G   ++I   EADD+I T   
Sbjct: 69  AKGKNFRHALFPDYKATRPPMPDDLRPQAEMLPELVELMGWKVLKINDVEADDVIGTLAV 128

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +   V I + DKD+ QLV+    L +T+K E +D   V++K+G+ PE++    AL 
Sbjct: 129 QAAAQNMNVIISTGDKDMAQLVNTQITLVNTMKNETLDSAGVMQKFGVKPEQIRDFLALM 188

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD +DN+PG+   G KTAA  L E+G+L+ I+  A   K  K  EN+        LS +L
Sbjct: 189 GDKVDNVPGVEKCGEKTAAKWLAEFGSLDEIMRRADEFK-GKIGENLRAALPQLPLSYEL 247

Query: 247 VMLRTDVPI--TIP--LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           V ++TDV +  ++P  L+ L  ++ N  +L+   + L F   +                 
Sbjct: 248 VTIKTDVDLHESLPNGLDDLARQNPNWQQLVPRFRELGFKTWLKE--------------- 292

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  EN+ +AI    D   T     F     Q   I       K+F E  ++L+   
Sbjct: 293 ------AENQ-LAIGETGDLFATPAAPVFR----QPENI-------KIFDELPKELN--- 331

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  +  ++ +   V +L++         T+++D   +K + I+++         F
Sbjct: 332 -----YQVVTTSEQLANLVVRLQSCRQIGLDTETNSLDPMTAKLVGISMA---------F 377

Query: 423 KV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
              + ++I ++ HT  +        +EI   LK F E+++  KIG N+KYD+ +   +GI
Sbjct: 378 AAGDAVYIPVA-HTLAEQLD----WQEISGSLKPFLEDKNLAKIGQNLKYDQHIFKNHGI 432

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537
            ++G   D ML SY+++S   SH++  +A +WL   + + + +       I    ++ +Q
Sbjct: 433 DLQGIAGDAMLASYIVES-HLSHNLDDLAMRWLGLETISYESLCGKGAKQISFADVNVAQ 491

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E+A ++++  L++   LR ++  +++  +YE ++ P+  V+ QME  G+ +D   L Q
Sbjct: 492 ATEYACQDADFALRIEQHLRTQMDAQQI-EIYENMELPVAQVLFQMERAGVHLDCAELAQ 550

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQ 655
            S E+   LL LE+  YDL+G+ FNL+SPKQL +ILF +L  P+    KT  G + T   
Sbjct: 551 QSTELGTELLQLEQQAYDLAGQPFNLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDES 610

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ K IL+ R L+K+KSTY D LP  IN +T RVHT Y+ A  +TGRLAS
Sbjct: 611 VLEKL-ADDYPLPKLILQNRSLAKLKSTYTDKLPEMINPQTGRVHTNYAQAVAITGRLAS 669

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   F+N+ 
Sbjct: 670 NNPNLQNIPIRTKQGRRVRRAFNAPDGYLIVSADYSQIELRIMAHLSGDATLQAAFQNNE 729

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR  AAE+FGV  EK++ + RR+AKTINF +IYG+  + LA  L I    AA +IKRY
Sbjct: 730 DVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMGEYGLAKSLGIDNVSAAMFIKRY 789

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+ G+ EY+++TK   +Q G+VET+FGR+++  +I+S  +  R   ERAAINAP+QG+
Sbjct: 790 FARYTGVAEYMQRTKEHAQQFGFVETLFGRKLYLPDIHSNHAMKRAGAERAAINAPMQGT 849

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           A+D+ ++AMI V K L + K  +++++Q+HDELV EV E E+      +   M +     
Sbjct: 850 ASDLIKKAMIDVSKFLMNQK--SRLVMQVHDELVLEVHESELDWIQIKLPEIMSQVGAEV 907

Query: 956 INLRVPLKVNIKVSNNWQE 974
           +N  VPL   + V  NW +
Sbjct: 908 LN--VPLLAEVGVGKNWDD 924


>gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 884

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 336/927 (36%), Positives = 521/927 (56%), Gaps = 67/927 (7%)

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EAD
Sbjct: 12  THAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 71

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE 
Sbjct: 72  DVIGTLAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPEL 131

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRREN 232
           ++   AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     
Sbjct: 132 IIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGK 191

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + +  + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V    
Sbjct: 192 LAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGK 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              A   +P      T     + I+               S S+  + ++ E        
Sbjct: 252 WLQAKGAKPAAKPQET-----VVID--------------ESPSEPAAALSYE-------- 284

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                         +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +
Sbjct: 285 --------------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA 330

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            ++        V   ++D     S+         +  L  LK   E+E   K+G N+KYD
Sbjct: 331 -IEPGVAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYD 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           + VL  YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +
Sbjct: 381 RGVLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQL 440

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITG 587
             ++I+  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G
Sbjct: 441 TFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNG 500

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           ++ID  +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  
Sbjct: 501 VKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPG 560

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A 
Sbjct: 561 GAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV 619

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L
Sbjct: 620 TATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGL 679

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR E
Sbjct: 680 LTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKE 739

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAA
Sbjct: 740 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAA 799

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H 
Sbjct: 800 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQ 858

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           + + C     + VPL V +    NW +
Sbjct: 859 LMENC---TRIDVPLLVEVGSGENWDQ 882


>gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
 gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
          Length = 924

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 347/981 (35%), Positives = 531/981 (54%), Gaps = 70/981 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++  L LVDGSS++YRAF+A P L R   G P +   G    +  +LQ+ RKE  A +
Sbjct: 1   MSEKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPASPPTGAIRGMINMLQSLRKEVTADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+ +YP+YKA R  +P+ L  Q+  +    +  G   +++ G EADD+
Sbjct: 60  AACVFDAKGPTFRDALYPEYKAQRAPMPDDLRAQIEPIHQVVRLMGWAVLDVPGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +G  V I S DKDL QLV+    + DT+  ++ D+  V  ++G+PP  MV
Sbjct: 120 IGTLAVAAAAQGVEVFISSGDKDLSQLVNEHIVIVDTMNGKRRDVAGVTAEFGVPPALMV 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             Q L GD++DN+PG+  +G KTAA  L EYG+L+ ++  ++ IK     EN+ +  +  
Sbjct: 180 DYQTLVGDAVDNVPGVDKVGPKTAAKWLTEYGSLDALVARSAEIKGAAG-ENLRKALDWL 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              R+L+ ++TD             D NG   +  L AL+  ++        + D A ++
Sbjct: 239 PTGRQLLTIKTDC------------DLNG--WVPGLPALDAVRV-------GEPDNAALK 277

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                      KG+A             ++   L D+ + +    TP             
Sbjct: 278 TFYEQYGF---KGLAKALADKASAAASAAEAPGLFDEPAPV----TPS------------ 318

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I   +Y  I++ +    W+ +++     +    T ++D   ++ + I+ S        
Sbjct: 319 --ITQVAYDTILDWEAFNTWLARIDAAELVALDTETTSLDEMVAEIVGISFSVTPG---- 372

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E  +I L +H   D+  +     E+L+ LK + EN    K+G ++KYD+ V   +G
Sbjct: 373 ----EAAYIPL-MHDYPDAPAQ-LPRDEVLAKLKGWLENPAKKKLGQHVKYDRHVFANHG 426

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           I ++G+  D ML SYVL+     H +AS+A++ L       +++       IP  ++S  
Sbjct: 427 IEVQGYVHDTMLQSYVLEV-HKPHGLASLAERHLGRKGINYEDLCGKGAKQIPFSQVSID 485

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  E++ E+S+  L +   L P+L  +     KL  +YE L+    + + ++E  G+ ID
Sbjct: 486 KAAEYSCEDSDQTLDVHRTLWPRLEKDAQEGGKLRFIYE-LEIASSETLYRIERNGVLID 544

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q S E+ + +L LE+  Y+L+G+ FNL SPKQ+G+I F KL  P   KT TG   
Sbjct: 545 APTLAQQSHELGQRILQLEQEAYELAGQPFNLGSPKQIGEIFFGKLGLPIVKKTATGAPS 604

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + LE++   D P+   ILE R LSK+K TY D L       T RVHT Y+ A  +TG
Sbjct: 605 TDEEVLEKL-ADDYPLPAKILEHRGLSKLKGTYTDKLAQMALPGTGRVHTHYAQAVAVTG 663

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+T  G+++R AFI+PP   + SADYSQIELRI+AH++    L   F
Sbjct: 664 RLSSNDPNLQNIPIRTPEGRRVREAFIAPPGCLIASADYSQIELRIMAHLSGDAALLLAF 723

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            + +D+HR  A+E+FGV    V+ + RR+AKTINF +IYG+S + LA  L I  + A +Y
Sbjct: 724 HDGMDVHRATASEVFGVPTSAVTSEQRRYAKTINFGLIYGMSSYGLAKSLGIDNTAAKNY 783

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+RYF RF G+  Y+++T+   +  GYVET+FGRR++  EINSP    R   ERAAINAP
Sbjct: 784 IERYFDRFAGVKRYMDETRASAKAKGYVETVFGRRLYLPEINSPNGPRRGGAERAAINAP 843

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AAD+ + +M +V + L+     TKM++Q+HDELVFEVPE E+    + +   M   
Sbjct: 844 MQGTAADLIKLSMNAVQRVLDAEGRKTKMIMQVHDELVFEVPENEVDWLKREVPKLMAGV 903

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
                 LRVPL   + V  NW
Sbjct: 904 A----QLRVPLLAEVGVGVNW 920


>gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
          Length = 948

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 344/973 (35%), Positives = 529/973 (54%), Gaps = 79/973 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+ + + E    + A IFD
Sbjct: 48  LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDYKAE----YAACIFD 102

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YP+YK++RP +PE L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 103 ARGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAC 162

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G    + + DKDL QLV+    L +T+  E +D   V+ K+G+ P+++V    L 
Sbjct: 163 RAAERGVHTVVSTGDKDLAQLVNSHVTLVNTMSGEVLDEAGVLNKFGVAPDRIVDYLMLV 222

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTAA  + E+G+++ ++  A  IK      N+ E      L+R+L
Sbjct: 223 GDTVDNVPGVTKVGPKTAAKWISEFGSIDKLVEGAEGIKGVAG-NNLREAIPNFPLTRQL 281

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           + ++                C                         DCD       V D+
Sbjct: 282 LTVK----------------C-------------------------DCDLTGHVDSVDDL 300

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
            T  ++  A  TE+      +T     L D T   ++E+ P         ++   P   D
Sbjct: 301 -TPRDRDDATLTELYERYGFRTW----LRDLTG--DAERVPTG-DARVAAEVPAAPTELD 352

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I +      W+++++     +    T ++D   +K + ++++              
Sbjct: 353 -YRIIADWPAFDAWMEQVDKAALVAVDTETTSLDEMQAKLVGLSMAVAPGV--------A 403

Query: 427 IFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
            +I ++ H   D  G   L K E+L+ L+ + E+    K+ H+ KYD  V    GI + G
Sbjct: 404 CYIPVA-HRGPD--GATQLPKDEVLARLRPWLEDASRAKLLHHAKYDTHVFANEGIRLAG 460

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541
             ED ML +YVL+S R    +  +AQ++L     + +++       I  D+++  +   +
Sbjct: 461 IAEDTMLQAYVLESHRGV-GLNDLAQRYLGRSGVSYEDLCGKGAKQIGFDEVAVDKAGHY 519

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E+++  LQL  +LRP++  +  L     L+  +  V++ +E  G+++D   L + S +
Sbjct: 520 AAEDADFTLQLHQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHK 579

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + + +L LE+  Y+L+G+ FNL+SPKQLG+ILF +++ P   KT  G   T  + L ++ 
Sbjct: 580 LGQEMLQLEQKAYELAGQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLSKL- 638

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ + +LE+R LSK+KSTY D LP  IN  T RVHT YS A+ +TGRLAS +PNLQ
Sbjct: 639 AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPDTGRVHTHYSQAAVITGRLASSDPNLQ 698

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T+ G+++R AFI+     L+SADYSQIELRI+AH++    L + F    DIHR  
Sbjct: 699 NIPVRTEAGRRVREAFIAE-QGLLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRAT 757

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+E+FGV +  VS + RR AK INF +IYG+  F LA+ L I R  A  YI RYF R+PG
Sbjct: 758 ASEVFGVALADVSSEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARYPG 817

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E T+   R+ GYVET+FGRR+   EI       R   ERAAINAP+QG+AAD+ +
Sbjct: 818 VAMYMENTRRVAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQGTAADLIK 877

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AM++V   LE  KL T+M++Q+HDELV E P+ E+    Q +   M         LRVP
Sbjct: 878 MAMVAVQDWLEAEKLQTRMIMQVHDELVLEAPDAELELVKQTLPRLMCNVA----ELRVP 933

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW++
Sbjct: 934 LVAEVGVGKNWEQ 946


>gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640]
 gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06]
          Length = 932

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 360/990 (36%), Positives = 540/990 (54%), Gaps = 76/990 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56
           M     L LVDGSS++YRA++A   + R++    DG P  A+ G  NML +L    R E 
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHA---MLRQNLTAPDGAPTGALYGVLNMLRRL----RLEY 53

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEI 112
              + AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + +
Sbjct: 54  PHDYCAVVFDAKGKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLT----GWPVLVV 109

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
              EADD+I T        G  V + + DKD+ QLV+    L +T+  E +DIE V +K+
Sbjct: 110 GQVEADDVIGTLAKQGVGHGLQVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKF 169

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P+++    ALTGD +DN+PG+   G KTA   L+ YG+L+ ++ +A+ IK  K  EN
Sbjct: 170 GVRPDQIRDYLALTGDKVDNVPGVEKCGPKTAEKWLEAYGSLQGVMEHAAEIK-GKVGEN 228

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +        LS  LV ++TDV +     H  L D         L++L  T          
Sbjct: 229 LRAALPRLPLSYDLVTIKTDVDL-----HAELSDG--------LESLRRT---------- 265

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ-KLF 351
              A     +V+D      +    E E    + +  +    LS  +  I  + TP  ++ 
Sbjct: 266 ---APKWAQLVVDFKRWGFRTWLKEAE----SRMHEAADGGLSG-SDAIGGQATPAAEMP 317

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            ERL + +  P   D Y  +         + KL           T ++DA ++ P+ I+I
Sbjct: 318 SERLPEKAVAPEKLD-YQAVTTEAQFAALLDKLSQAEKIGIDTETTSLDAMNAAPVGISI 376

Query: 412 STLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           +         F+  E ++I   V  S  +  +    + +L  LK   EN    KIG N+K
Sbjct: 377 A---------FQAGEAVYI--PVGHSLTAAPEQLDLQYVLDRLKPHLENPALKKIGQNLK 425

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
           YD+ V    GI++ G   D ML SY+++S    H +  ++ +WL     T + +      
Sbjct: 426 YDQHVFANCGIALNGIVGDAMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAK 484

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            I    ++     E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+ +ME  
Sbjct: 485 QIGFADVAIGPATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVLFEMERV 543

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--K 644
           G+QID+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    K
Sbjct: 544 GVQIDRAELARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKK 603

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T  G   T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R +RVHT Y+
Sbjct: 604 TAKGGISTNEDVLEQL-APDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYA 662

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A  +TGRLA   PNLQNIPI+T+ G+K+RRAF +PP   ++SADYSQIELRI+AH++  
Sbjct: 663 QAVAITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGD 722

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I 
Sbjct: 723 KTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGID 782

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
              A ++I RYF R+PG+ EY+++ +      GYVET+FGRR++  +I    ++IR   E
Sbjct: 783 NLSAKNFIDRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLSDIRHTNANIRARAE 842

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAAINAP+QG+A+D+ +RAMI V + L D  L +K+++Q+HDELV EVPE E+    + +
Sbjct: 843 RAAINAPMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKL 902

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M  A +    L VPL   +    NW+E
Sbjct: 903 PQMM--AAVDDGMLDVPLVAEVGAGMNWEE 930


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 354/976 (36%), Positives = 542/976 (55%), Gaps = 92/976 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T   
Sbjct: 59  AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+G+ + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +++   AL 
Sbjct: 119 NLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDASDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ + + +E L  +  +   LI      EF  L+       D D ++I+      
Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIK------ 285

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                              I TSQ      Q + +  E                      
Sbjct: 286 -------------------IATSQA-----QAADVAIE---------------------- 299

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +   + +LE   S +F   TD+++ + +  + ++      K+  +F +  
Sbjct: 300 -YITITTQTQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               L V   Q   G       +L  LK+ F +   +K+ HN K+D+ VL +Y I + G 
Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540
            +D M+M+YVL S    HD+ S++++ L     +YT   I  + K    +D++    V +
Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYT--AIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K+L+ +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF K+  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKMGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+VN+    +W +
Sbjct: 880 NVPLEVNVDSGKSWDQ 895


>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
 gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
          Length = 902

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 354/984 (35%), Positives = 551/984 (55%), Gaps = 115/984 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+++RA+YA P L+ +  G P  A+ G  NML KL+   + +    + AV+FD
Sbjct: 16  LILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVAVVFD 70

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+++Y  YKANR ++P  L  Q+ PL  +  +A G P I  +G+EADD+IAT  
Sbjct: 71  PKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEI-IRALGFPLIIKEGYEADDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A+++G  V + + DKDL Q+V+    L +T+ +  ++ + V++K+G+PPEK++    L
Sbjct: 130 KKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTL 189

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
           TGD+ DNIPG+P +G KTA   L +Y ++EN++ +A+ IK K              +   
Sbjct: 190 TGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHANEIKGK--------------VGEN 235

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L     D+P                             L+ R+ T           V+ D
Sbjct: 236 LRACIDDLP-----------------------------LMRRLVT-----------VISD 255

Query: 306 INTTENKGIAIETEIDRDTTIK---TSQFSS-----LSDQTSKINSEQTPQKLFLERLQK 357
           +   EN    I+TE +R+  I+     +F S     L++Q  K+ + Q            
Sbjct: 256 LPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQDKKVAAFQ------------ 303

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I + K  ++W++KL      +F   T   +A  +K + ++ +     
Sbjct: 304 ----------YATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH- 352

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL--TKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  E  ++ L      D TG       +E+L  LK   E+ +   I  N+KYD  V
Sbjct: 353 -------EAAYVPLG----HDYTGAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEV 401

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L + G+++R    D +L SYVL+S  + HD+ ++A K+L       +++       I  +
Sbjct: 402 LAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFN 461

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590
            ++  +   +A E+++V LQL   L P +  EK L  V+E+++ P++ ++ +ME+ G+ +
Sbjct: 462 HVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLV 521

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L+  S E+   +  LE+  Y L+G +FNLSSPKQL  IL+ +LK P   KT  GQ 
Sbjct: 522 DTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ- 580

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA+++ Q    D P+ K ILE R L+K+K+TY D LP  ++  ++R+HT Y+   T T
Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIPI+T+ G+KIRRAFI+PP  ++++ADYSQ+ELRI+AHI+K   L + 
Sbjct: 641 GRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKA 700

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIHR  AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L  QL I R  A +
Sbjct: 701 FDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAKE 760

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF R+P +HEY++K +      GYVET+FGRR++  +I++     R   ERAAINA
Sbjct: 761 YIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINA 820

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI + AMI V   L+ + +   +++Q+HDELVFEV E+++      I  +ME+
Sbjct: 821 PMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEE 880

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + L VPL V++ V  NW E
Sbjct: 881 A----VALSVPLVVDVGVGGNWDE 900


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 919

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 347/963 (36%), Positives = 533/963 (55%), Gaps = 76/963 (7%)

Query: 40  GFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
           G  NML  L+         SH AV+FD    TFR+E++  YK++RP +P+ L  Q+  + 
Sbjct: 3   GVLNMLKSLVAQVE----PSHIAVVFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLH 58

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
              +A GIP I I+G EADD+I T    A   G  V I + DKD+ QLV+    L +T+ 
Sbjct: 59  TIIKALGIPLISIEGVEADDVIGTLAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMN 118

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
              +D E VI K+GIPPE ++   AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  
Sbjct: 119 NTLLDREGVIDKYGIPPELIIDYLALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYA 178

Query: 220 NASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
           N  ++        K     +    + A LS  L  ++TDV + +  E L+++      L+
Sbjct: 179 NLDQVATLSFRGAKTLAPKLEAEKDAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELV 238

Query: 274 SFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
                 EF + +N V      + AN  PV      T+N     E +I        + + +
Sbjct: 239 ELFGRYEFKRWLNEV-----MNDAN--PV------TQNS----EEKI-------PNNYQA 274

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
            +     + +EQT            ++  IN   Y  +   + +Q W++K+  +   +  
Sbjct: 275 TASVPQAVETEQT-----------FAKVEINRSRYETVTTMEQLQSWIEKINQVKLVAVD 323

Query: 394 IITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
             TD +D+  +  + ++            L  K+  + + +   +      ++ +T    
Sbjct: 324 TETDNLDSMSANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFEL 383

Query: 445 LTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS 498
             K++     L+ LK   EN    KIG NIKYD  +   +G+ + G   D ML SY L+S
Sbjct: 384 AKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNS 443

Query: 499 -GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
            GR  H++  +A ++L +     +EI    K+ + +DKI+     ++A E+++V ++L  
Sbjct: 444 TGR--HNMDELADRYLGHKTIEFEEIAGKGKNQLTLDKIAIDVASQYAAEDADVTMKLHQ 501

Query: 555 LLRPKLIVEK---LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           +L P+L  EK   L+ ++  ++ P+++V+S++E  G+ ID + L   SAEI + L  LE+
Sbjct: 502 VLAPEL--EKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQ 559

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            ++  +GE FNL+S KQL +ILFTKL  P   KT  G   T  + L+++    + + K +
Sbjct: 560 LVHSEAGEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLL 619

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           +E R LSK+KSTY D LP  IN++T RVHT Y  A T TGRL+S +PNLQNIPI+ + G+
Sbjct: 620 MEHRGLSKLKSTYTDKLPLMINQKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGR 679

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           +IR+AFI+    K+++ADYSQIELRI+AH+A    +   F    DIHR  AAEIFG+ ++
Sbjct: 680 RIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALD 739

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+ + RR AK INF +IYG+S F L+ QL I R++A  Y++RYF R+P + +++   + 
Sbjct: 740 QVTSEQRRSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 799

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
              + GYVET+FGRR++  EI S  +  R   ER AINAP+QG+AADI + AMI + K++
Sbjct: 800 SASEKGYVETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAI 859

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
                  KM++Q+HDELVFEV EE +   SQ+I   MEKA    I L+VPL   + V +N
Sbjct: 860 RGDD-NIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDN 914

Query: 972 WQE 974
           W E
Sbjct: 915 WDE 917


>gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 921

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 348/995 (34%), Positives = 534/995 (53%), Gaps = 108/995 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++Y AF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYPAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +     R   K     + E+ E
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIR-GAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L    C  P                            
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQL---HCGEP---------------------------- 268

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                                 DRDT ++     +F S  +   + ++++  Q+L +E  
Sbjct: 269 ----------------------DRDTLMELYAELEFKSWIEDLQR-DAKRAGQELTVEE- 304

Query: 356 QKLSQYPINND---SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                 P   D   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +
Sbjct: 305 ------PTVEDREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA 358

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            +   +     +   ++ +     +D+         +L  LK   E+    K+G + K+ 
Sbjct: 359 -IQTHEAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFA 408

Query: 473 KLVL--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEI 520
             +L           GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI
Sbjct: 409 INLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEI 468

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDV 579
                  +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V
Sbjct: 469 AGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPV 528

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++++E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  
Sbjct: 529 LARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGM 588

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P  +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+
Sbjct: 589 PILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+A
Sbjct: 649 HTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMA 708

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+A+   L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA 
Sbjct: 709 HLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAK 768

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           Q+ + R ++  Y+ RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   S+
Sbjct: 769 QIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSL 828

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +  
Sbjct: 829 RKGAERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQ 888

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            S+ I   M  A      L VPL V + V +NW E
Sbjct: 889 VSEQIRPHMSGAA----ELAVPLLVEVGVGHNWDE 919


>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
 gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
          Length = 902

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 354/984 (35%), Positives = 550/984 (55%), Gaps = 115/984 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+++RA+YA P L+ +  G P  A+ G  NML KL+   + +    + AV+FD
Sbjct: 16  LILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVAVVFD 70

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+++Y  YKANR ++P  L  Q+ PL  +  +A G P I  +G+EADD+IAT  
Sbjct: 71  PKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEI-IRALGFPLIIKEGYEADDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A+++G  V + + DKDL Q+V+    L +T+ +  ++ + V++K+G+PPEK++    L
Sbjct: 130 KKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTL 189

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
           TGD+ DNIPG+P +G KTA   L +Y ++EN++ +A  IK K              +   
Sbjct: 190 TGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKGK--------------VGEN 235

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L     D+P                             L+ R+ T           V+ D
Sbjct: 236 LRACIDDLP-----------------------------LMRRLVT-----------VISD 255

Query: 306 INTTENKGIAIETEIDRDTTIK---TSQFSS-----LSDQTSKINSEQTPQKLFLERLQK 357
           +   EN    I+TE +R+  I+     +F S     L++Q  K+ + Q            
Sbjct: 256 LPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQDKKVAAFQ------------ 303

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I + K  ++W++KL      +F   T   +A  +K + ++ +     
Sbjct: 304 ----------YATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH- 352

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL--TKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  E  ++ L      D TG       +E+L  LK   E+ +   I  N+KYD  V
Sbjct: 353 -------EAAYVPLG----HDYTGAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEV 401

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L + G+++R    D +L SYVL+S  + HD+ ++A K+L       +++       I  +
Sbjct: 402 LAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFN 461

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590
            ++  +   +A E+++V LQL   L P +  EK L  V+E+++ P++ ++ QME+ G+ +
Sbjct: 462 HVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLV 521

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L+  S E+   +  LE+  Y L+G +FNLSSPKQL  IL+ +LK P   KT  GQ 
Sbjct: 522 DTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ- 580

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA+++ Q    D P+ K ILE R L+K+K+TY D LP  ++  ++R+HT Y+   T T
Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIPI+T+ G+KIRRAFI+PP  ++++ADYSQ+ELRI+AHI+K   L + 
Sbjct: 641 GRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKA 700

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIHR  AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L  QL I R  A +
Sbjct: 701 FDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQE 760

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF R+P +HEY++K +      GYVET+FGRR++  +I++     R   ERAAINA
Sbjct: 761 YIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINA 820

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI + AMI V   L+ + +   +++Q+HDELVFE+ E+++      I  +ME+
Sbjct: 821 PMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEMAEKDLEKVIPQIKKAMEE 880

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + L VPL V++ V  NW E
Sbjct: 881 A----VALSVPLVVDVGVGGNWDE 900


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 354/976 (36%), Positives = 538/976 (55%), Gaps = 92/976 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T   
Sbjct: 59  AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   AL 
Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ + + +E L  +  +   LI      EF  L+       D D ++I+ V    
Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           +  +   +AIE                                                 
Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +   + +LE   S +F   TD+++ + +  + ++      K+  +F +  
Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               L V   Q   G       +L  LK  F +   +K+ HN K+D+ VL +Y I + G 
Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540
            +D M+M+YVL S    HD+ S++++ L     +YT   I  + K    +D++    V +
Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTV--IAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K+L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+VN+    +W +
Sbjct: 880 NVPLEVNVDSGKSWDQ 895


>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
 gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
          Length = 929

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 349/989 (35%), Positives = 533/989 (53%), Gaps = 92/989 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 10  LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 64

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y +YKANRP +P+ +  Q+  +  +  A G P + ++G EADD+I T   
Sbjct: 65  AKGGTFRDDMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +DIE V +K+G+ PE+++   AL 
Sbjct: 125 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDIEGVKEKFGVAPEQIIDYLALM 184

Query: 187 GDSIDNIPGIPGIGYKTA-ALLLQEYGNLENI-----LINASRIKQKKRRENIL-EYAET 239
           GDS DNIPG+PGIG KTA  LL+   G L+ +     ++    I+  K     L E+ E 
Sbjct: 185 GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEM 244

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +L  ++ DVP+ + L+ L L + +  +L+     LEF    + +           
Sbjct: 245 AFLSYQLATIKIDVPLDVGLDDLHLIEPDREKLLELYTLLEFKSWFDEIQR--------- 295

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                D    E K   +  ++        + ++++ DQ                      
Sbjct: 296 -----DAKRVELKAAPVVEDVAEVAAPAEATYTTILDQA--------------------- 329

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                         T DI  W++KL      +F   T  +DA  ++ + ++ +   Q  +
Sbjct: 330 --------------TFDI--WLKKLNDAKLFAFDTETTGIDAQQAQLVGVSFAV--QPHE 371

Query: 420 TSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            ++  +   +I       +D+         +L  LK   E+   LK+G + K+D  +L  
Sbjct: 372 AAYIPLTHAYIGAPEQLDRDT---------VLLALKPLLEDPTKLKVGQHAKFDMNILAN 422

Query: 479 --------YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
                   +GI++RG   D ML SYVL++  + HD+ S+A+K+L Y     ++I      
Sbjct: 423 CAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVAFQDIAGKGAK 482

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E+++V L+L   L  +L  +  L  V   ++ P++ V++++E 
Sbjct: 483 QLTFDQIALEQAGPYAAEDADVTLRLHQALFAQLSAIPSLASVLTDIEIPLVPVLARIER 542

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D+DLL   S E+   ++ LE   ++++GE+FNL SPKQLG IL+ KL  P   KT
Sbjct: 543 QGALVDKDLLGIQSIELGNKMVELERQAFEIAGEEFNLGSPKQLGAILYEKLGLPVLKKT 602

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             GQ  T  + L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 603 GKGQASTAEEVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 662

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A   TGRL+S +PNLQNIP++T  G++IR+AFI+P   K+++ADYSQIELRI+AH++K  
Sbjct: 663 AVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPKGYKMLAADYSQIELRIMAHLSKDE 722

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F ++LD+H   AAE+F V +  V+   RR AK INF +IYG+   +L   + +  
Sbjct: 723 GLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDT 782

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF R+PG+ EY+E+T+      GYVET FGRR++  +I+S K   R   ER
Sbjct: 783 KTAKAYIDVYFARYPGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNKPQERAAAER 842

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM+ V   L D  L  K++LQ+HDELV EV E+ +   S+ I 
Sbjct: 843 TAINAPMQGTAADIIKKAMVLVDNWLTDSGLDAKVILQVHDELVLEVREDLVAEVSEKIR 902

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M  A      L VPL V + V +NW +
Sbjct: 903 EYMSAAA----QLDVPLLVEVGVGDNWDQ 927


>gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
 gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
          Length = 1022

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 359/999 (35%), Positives = 559/999 (55%), Gaps = 63/999 (6%)

Query: 7    LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
              LVDGS +++R ++A P       GL  NAI G  N L K+++        +H AV FD
Sbjct: 54   FVLVDGSYYLFRTYHALPKTMMTTQGLTTNAIRGTLNALLKVMRRYHP----THMAVCFD 109

Query: 67   YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              + TFR+ +  +YKANRPK+   L  Q+P +    +A GIP + I+G EADDII T T+
Sbjct: 110  TKSPTFRHTMSEEYKANRPKMDPELAEQIPYIHRLVRALGIPLLRIEGAEADDIIGTLTH 169

Query: 127  IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             A +EG  V I + DKD+MQLV+    L D+   + +D+  V +K+GI P +++ L  L 
Sbjct: 170  RAIEEGHHVVISTGDKDMMQLVNDCVILEDSFAGKVVDVPAVEEKFGIKPNQIIDLLTLM 229

Query: 187  GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
            GD+ D I GIP +G KTA   L +Y  ++NIL NA  IK  K  E ++E+ +     R+L
Sbjct: 230  GDASDGIKGIPSVGQKTAVKWLNQYQTVDNILANAHNIK-GKVGEKLVEFVDNIPRDRQL 288

Query: 247  VMLRTDVPITIPLEHLILEDCNGPRLISFLK----ALEFTKLINRVATTYDCDAANIEPV 302
              + T++ I    E L + + +    ++ L+     LEF    N +A+    D  N  P 
Sbjct: 289  ATIVTNLDIGQDWEDLRI-NTDSSTFVAELRDLYSELEFK---NELAS---LDHPN-HPA 340

Query: 303  VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER------LQ 356
               +++  +     E++     T++  + SS+ +     N+        L+       L 
Sbjct: 341  NSSVHSVADSKADAESQAQVAKTLQHQKQSSIIEHIKNSNTHDKAWHTILDESAFDNLLN 400

Query: 357  KLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            KL   P    D+ T  +N ++ Q        I   SF +     +A++  P+A       
Sbjct: 401  KLQAAPYFAVDTETTSINWREAQ--------IVGLSFSV--QAHEAYY-LPLAHVDYNEP 449

Query: 416  QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            QK   + K E     L  + + D      L ++ +L+ LK   EN +  KIG ++KYD  
Sbjct: 450  QKKAKNKKEEAEQAKLLANATVDPLIAKQLDRDTVLAKLKPILENPNIGKIGQHLKYDAH 509

Query: 475  VLHRYGISM----RGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKS 526
            VL +YGI +    + +E D ML SYVL++  + H +  +A+ +L   + + +++      
Sbjct: 510  VLSKYGIELNMSPKNWEMDTMLASYVLNAAATRHSMDDLARHYLHTQTISFEDVAGKGAK 569

Query: 527  SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL----IVEKLLHVYERLDKPMIDVVSQ 582
             +  DK++ +   ++A E++++  QL+ L + KL    + ++LLH    L+ P+  ++ Q
Sbjct: 570  QVTFDKVAINIASDYACEDADITYQLFELFQDKLKDDAVNQRLLH---ELEIPVAQILCQ 626

Query: 583  MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
            ME  GI I +  L ++S    + +++LE+  Y  +GE FNL SPKQLG++LF KL    G
Sbjct: 627  MESEGIMIKRSFLNELSERFDEEIVALEKQAYIEAGEAFNLGSPKQLGEMLFDKLGVIGG 686

Query: 643  AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
             KTK+GQ+ T    L +I   ++P+ +  LE+R L+K+K+TY D+L    +  T RVHT 
Sbjct: 687  KKTKSGQYSTGEAVLSKI---EHPLAEIALEYRSLAKLKNTYTDALDAVADNDTDRVHTS 743

Query: 703  YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
            Y  A T TGRL+S +PNLQNIPI+T  G+ IR+AFI+P  + L++ADYSQIELR++AH +
Sbjct: 744  YHQALTSTGRLSSTDPNLQNIPIRTKTGRLIRQAFIAPKGRVLLAADYSQIELRLMAHFS 803

Query: 763  KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
                L + F   LDIH   AAE+ G +++ V+P  RR+AK INF ++YG+S F LA Q++
Sbjct: 804  GDDNLTRAFNEGLDIHSATAAEVLGKSVDDVTPTERRNAKAINFGLLYGMSAFGLAKQIQ 863

Query: 823  IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
            + RSEA DYI +YF R+PG+  Y+++T+N    NGY+ETI GR+++  +I      +R  
Sbjct: 864  MGRSEAQDYINQYFARYPGVQRYMQETRNSAVDNGYIETILGRKLYTPDIQHSNQMVRRG 923

Query: 883  NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             ERAAINAP+QGSAAD+ + AMI+V   L   K   KMLLQ+HDELVFEV  +++   ++
Sbjct: 924  AERAAINAPLQGSAADLIKLAMIAVDNVLP--KQNAKMLLQVHDELVFEVDADKVDHIAK 981

Query: 943  IIVHSME-------KACLPKINLRVPLKVNIKVSNNWQE 974
            +I ++M+       K     ++  VPL V   V +NW E
Sbjct: 982  LIKNAMQNVLSDTAKQMGWDVDFAVPLLVETGVGDNWDE 1020


>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
 gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
          Length = 893

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 355/986 (36%), Positives = 531/986 (53%), Gaps = 107/986 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  ++ L+LVDGSS+IYRA+YA   LS    G P N I GF  ML KLL    KE    H
Sbjct: 1   MSHDDTLYLVDGSSYIYRAYYAIRHLSSP-TGHPTNTIYGFTQMLLKLL----KEHQPRH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR E+YPDYKANR  +P+ L  Q+  +R   +AF IPA+E+ GFEADDI
Sbjct: 56  VAVVFDVGRETFRTELYPDYKANRAALPDDLRVQMGPIRDLVRAFNIPALELAGFEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I          G  V I++ DKDLMQ+V+    L DT+KE++  I  VI+++G+ P  + 
Sbjct: 116 IGCLAARFSATGGRVVIVTGDKDLMQIVTERVTLLDTMKEKRSAITDVIERFGVEPRLVT 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GD+ DNIPG+PGIG KTA  L++EYG+L+ +L  AS +K K             
Sbjct: 176 DILGLAGDASDNIPGVPGIGEKTAMKLIREYGSLDQLLERASEVKGK------------- 222

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      NG +L  F        L++R   T  CD     
Sbjct: 223 ---------------------------NGEKLREFRD----QALLSRRLATIRCDV---- 247

Query: 301 PVVLDINTTENKGIAIETEIDRD---TTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           P+ +++    ++      E DR+   T  +   F++L  + +                  
Sbjct: 248 PIQVELEELASQ------EPDREALNTLFRLYGFTTLIKELT------------------ 283

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             +  ++++ Y  +   +++++ V  LE     +  + T ++D   ++ + ++ S  D  
Sbjct: 284 -GRSTLSSEGYCTVTAQEELEELVHALERSEEFAIDLETTSLDPRDAEIVGLSFSFRDH- 341

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  +  +I +  HTS        L ++ +L  L+   E+    KIG NIK+D  VL
Sbjct: 342 -------QAWYIPVG-HTSDAGLQPGQLPRDLVLERLRPQLESPSPTKIGQNIKFDMQVL 393

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
              G+S+ G   D ML SYVL+  R  H + ++A + L +   +  E+  S K+     +
Sbjct: 394 ATNGVSLSGIRFDTMLASYVLNPSRQGHGLDALALEHLGHRMISYAEVTGSGKTQKNFSQ 453

Query: 533 ISDSQVQEHAIENSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +       +A E+++     WLL R   P L    +  ++ R++ P++ +++ ME  G+ 
Sbjct: 454 VEIETASRYACEDADAT---WLLHRKFSPLLAENGVEELFHRIEMPLVPILAGMENHGVL 510

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D  LL  +S + S  + +LE  I+ L+G  FNL+SPKQLG++LF +L+  +G KTK   
Sbjct: 511 LDIRLLADLSRDFSSRMATLEGRIFQLAGTTFNLNSPKQLGEVLFERLQLKTGKKTKGKT 570

Query: 650 -WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            W T  + L  +   ++ I + IL++R LSK+KSTY+D+LP  ++ RT RVHT Y+   T
Sbjct: 571 GWSTDNEVLSSL-AEEHEIARLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVT 629

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI++D G+ IR AFI+PP   +ISADYSQIELR+LAH++      
Sbjct: 630 STGRLSSSDPNLQNIPIRSDEGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDPVFC 689

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q FE+  DIH   A+E+FG+  E V+ +MRR AKTINF IIYG   F LA QL I R  A
Sbjct: 690 QAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQGSFSLARQLGIARKTA 749

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I  Y  R      +++       + G+V TI GRR+   +I S   +IR   +R AI
Sbjct: 750 EEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGRRLPIADITSTNGNIRAFAQRNAI 809

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AMI V   +    L +++++Q+HDELVFEV E+E+     ++   M
Sbjct: 810 NYPIQGSAADIIKSAMIRVDGRIRSEGLKSRLIMQVHDELVFEVREDELLAMELLVEEEM 869

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            +A    + LR+PLKV+I    NW E
Sbjct: 870 SRA----VELRIPLKVDISHGVNWSE 891


>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
 gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
          Length = 932

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 361/989 (36%), Positives = 547/989 (55%), Gaps = 88/989 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + I+R +YA    P ++ K  GL  +AI GF N L ++++  + +    H AV
Sbjct: 5   LFLLDAYALIFRGYYAFIKNPRINSK--GLNTSAILGFMNSLLEVIKKEKPD----HLAV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD      R E++ DYKANR + PE +   +P +    +A  IP IE +G+EADDII T
Sbjct: 59  AFDKGGSVERTELFADYKANREETPEAIRLAIPYIHEILKALHIPIIEKEGYEADDIIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
            +  AEK+ + V +++ DKD  QLVS    +Y   +     E   ++ V +K+ +  P +
Sbjct: 119 LSKQAEKQNYLVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEKFEVQNPLQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++    + GD++DNIPG+PG+G KTA  LL ++G++EN+L +  ++K  K RENI    E
Sbjct: 179 VIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSMENLLAHTDQLK-GKLRENIESNKE 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS++L  +  DVP+T   E   + + +   +    + LEF +L+     TY      
Sbjct: 238 KGILSKQLATIMLDVPVTFDEEDFAMSEPDFEAVGRIFEELEFRQLLQNFLRTYQPQMTT 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL-ERLQK 357
             P +     TE + +++ T+ D         F+     + K NS  TP    L + L  
Sbjct: 298 TPPPLTGNKPTEGQ-LSLFTQGDL--------FAQPQVMSEKKNSTNTPHFYQLADTLMA 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 N    T++                    F   T +++A  ++ + I+      K
Sbjct: 349 QQLLLQNLLQQTEVC-------------------FDTETTSVNALEAELVGISFCWSAHK 389

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                           +     T K   TK +L   + FFENEH  K+G N+KYD  VL 
Sbjct: 390 G---------------YYVPFPTDKAATTK-LLETFRPFFENEHIGKVGQNLKYDLKVLQ 433

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI------LKSRKS--SI 528
            Y I +RG   D M+  Y+L+     H++  +++ +L+YT   I       K+++S  ++
Sbjct: 434 NYNIEVRGALFDTMIAHYLLNPDM-RHNMDILSETYLNYTPIAIESLIGKGKAQRSMRTV 492

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           P+D     QV+E+A+E+++V  QL  + +   PK+  EK   +Y  L+ P+I V++ ME 
Sbjct: 493 PLD-----QVKEYAVEDADVTWQLKNVFKEEMPKVNAEK---IYTDLEAPLIKVLAAMER 544

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-K 644
            G+ +D   LK+ +  +  ++  LE  I + +GE FNL+SPKQLGDILF KLK  S   K
Sbjct: 545 EGVNLDVPFLKEYAKTLDADIAQLEATIAEQAGENFNLASPKQLGDILFEKLKIDSKPKK 604

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQ+ T+ + L       + I+ +ILEWRQ+ K+KSTY D+LP  +NK T RVHT Y 
Sbjct: 605 TKTGQYATSEEVLAPF-ASKHKIVADILEWRQVQKLKSTYVDALPLEVNKLTGRVHTTYM 663

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAK 763
                TGRL+S  PNLQNIPI+T  GQ++R+AFI+  P   L+SADYSQIELRI+A +++
Sbjct: 664 QTVAATGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSE 723

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              +   F  + DIHR  AA++F V +E+V+ + R HAKT+NF IIYG+S F L+ Q  +
Sbjct: 724 EHNMIDSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTNL 783

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            RSE+ + I  Y+  +P +  YI K   F +++GYVET+ GRR +  +I+S    +R   
Sbjct: 784 SRSESKELIDTYYATYPNLRNYISKQIQFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAA 843

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+NAPIQGSAADI + AMI +   L   +L T+MLLQ+HDELVF+VP+ E+ T   +
Sbjct: 844 ERNAVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTELNTVKPL 903

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           I  +ME A      L VPL  ++ V +NW
Sbjct: 904 IKEAMESA----FTLAVPLVADLGVGDNW 928


>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
 gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
          Length = 942

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 338/995 (33%), Positives = 555/995 (55%), Gaps = 76/995 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFL+D  + I+R +YA    P ++ K  G   +AI GF N L+ +++  + +  
Sbjct: 1   MADQKRLFLLDAYALIFRGYYAFIKNPRINSK--GFNTSAIMGFTNSLFDVIRREKPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E++ +YKANR + PE +   +P+++   +A  IP +E  G EA
Sbjct: 57  --HLAVCFDKDGSKERTEMFAEYKANRDETPEPIREAIPIIQDILKAMHIPVVECAGMEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DDII T    AEKE + V +++ DKD  QLVS    +Y   +     + + I+ WGIP  
Sbjct: 115 DDIIGTLAKQAEKENYKVYMVTPDKDFAQLVSENIFMYRPAR-----MGNGIEIWGIPEV 169

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   PE+++    + GDS+DNIPG+PG+G KTA   L++YG++E +L N   +K  
Sbjct: 170 QKKFEVERPEQVIDFLGMMGDSVDNIPGLPGVGEKTAKKFLKKYGSMEALLENTDDLK-G 228

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +E ++E AE  RLS+KL  +  D  +    E   L   +G ++    + LEF +L ++
Sbjct: 229 KMKEKVIENAELGRLSKKLATIFIDCDVKFHAEDYELSMPDGDKVQEIFEELEFRRLKDQ 288

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
               +  +    +  V +  + +    A         T    QFS       +I  E+T 
Sbjct: 289 FIKLFSGEEETKQTQVSNSPSAKKNAQA---------TAGAGQFSLFGGDGEEI--ERTS 337

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
            +  L       Q  +N +   KI        +++KL    S  F   T +++   ++ +
Sbjct: 338 SRTNLSDTPHFYQ-SLNTEMARKI--------FIEKLLKQKSVCFDTETTSLNTLDAELV 388

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            IA S    K          ++       +         ++++  L+ FFEN+   KIG 
Sbjct: 389 GIAFSWEAGK--------GFYLPFPEEKKE--------AQKLIEELRNFFENDKIEKIGQ 432

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----K 522
           N+KYD  VL +Y I ++G   D M+  Y+++     H++  +A+ +L+YT + I     K
Sbjct: 433 NLKYDIKVLDKYKIDVKGALFDTMIAHYLINPDMR-HNMDVLAETYLNYTPQPISELIGK 491

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K+   +  ++  +  E+A+E++++  QL  L   +L   +   ++  ++ P+++V++ 
Sbjct: 492 KGKNQGSMRDVALDKQTEYAVEDADITFQLKNLFEKELEEAETRKLFNEIEIPLVEVLAD 551

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME+ GI++D++ LK +S  ++ ++  LE  IY+ +GE+F +SSPKQLG ILF K++    
Sbjct: 552 MELEGIKLDEEYLKSLSEALASDIKDLETKIYEAAGEEFLISSPKQLGIILFEKMELSKK 611

Query: 643 -AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTGQ+ +T++D+      +N I++++L++R L K+++TY D+LPN + + T RVHT
Sbjct: 612 PKKTKTGQY-STSEDVLSSLAEENDIVQHVLDYRGLVKLQNTYVDALPNQVERTTGRVHT 670

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759
            Y   +  TGRL+S  PNLQNIPI+T+ G+++R+AF+ P  +   L++ADYSQIELRI+A
Sbjct: 671 DYVQTTAATGRLSSNNPNLQNIPIRTERGKQVRKAFV-PRDENYVLLAADYSQIELRIIA 729

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    + Q F++  DIH   AA++F V +E+V+ + R +AKT+NF IIYG+S F L+ 
Sbjct: 730 ALSNEENMIQAFKDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSN 789

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           Q  + RSE+ + I  Y+  +P +  +I     F R+NG+V T+ GRR +  +INS  + +
Sbjct: 790 QTSLSRSESKELIDTYYKTYPKLSNFIADQVEFARENGHVSTVLGRRRYLKDINSRNAIV 849

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER A+NAPIQGSAADI + AMI++HK L++    TKMLLQ+HDELVF+  ++E+  
Sbjct: 850 RGAAERNAVNAPIQGSAADIIKLAMINIHKKLKEENYKTKMLLQVHDELVFDAHKDELEK 909

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++I   ME A      L VPL V++ V  NW E
Sbjct: 910 VQKMIKSEMENA----YKLEVPLDVDLGVGKNWLE 940


>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
 gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
          Length = 920

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 343/989 (34%), Positives = 550/989 (55%), Gaps = 95/989 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA   TP ++ K  GL  +AI GFCN L ++L         +H  V
Sbjct: 4   LFLLDAYALIYRSYYAFLRTPRINSK--GLNTSAIMGFCNTLNEVLTKEH----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+   TFR+E++P YKA R + PE +   +P+++   +A  IP +++ GFEADD+I T
Sbjct: 58  AFDH-GKTFRHEVFPAYKAQREETPEDIRQSVPIIKQILEAMRIPILQVDGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175
                  +G    +++ DKD  QL+ P   +        Y+T+ E++++      K+GIP
Sbjct: 117 VATRFGTDGIDTFMLTPDKDYGQLIGPRVFIFRPRHGGGYETLGEKEVE-----SKYGIP 171

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ L AL GDS DN PG PG+G KTAA L+ ++G+++N+L +   IK  K R+ I 
Sbjct: 172 TPAQVIDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNLLQHTDEIK-GKLRDKIE 230

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E  ++S+ L  +RTDVP+ + L+ L +E  +  +L    + LEF  L N++      
Sbjct: 231 NAVEDIKMSKLLATIRTDVPLQLSLDELKVEQPDEVKLRRIFEELEFKTLANKL------ 284

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                      +N +E K   +ET++D         FS      +  N ++ P+K   E 
Sbjct: 285 -----------LNKSELKPKNVETQLDL--------FS-----VNTPNGQEEPEKTNYET 320

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            + +         Y  I N +++ +      T    S    T + DA  ++ + ++ S  
Sbjct: 321 HKTVPH------EYKLIDNEEEMDRLCDFFMTKEFVSIDTETTSTDAIRAELVGLSFSVE 374

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKY 471
           + K          ++ L  +            +E L Y++ F   +EN+  LKIG NIKY
Sbjct: 375 ENK--------AFYVPLPANR-----------EEALKYIRIFKPLYENDKILKIGQNIKY 415

Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KS 526
           D  VL+ YG++++G   D M+  Y++      H++  +A+  L Y     +E++  + K 
Sbjct: 416 DYKVLNNYGVTLQGEMFDTMIAHYLIQP-ELHHNMDYMAETLLGYRTIHIEELIGPKGKK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
              +  +S + + E+A E++++ L+L  LL P+L    L  ++  ++ P++ V++ ME+ 
Sbjct: 475 QKNMRDLSPTDICEYAAEDADITLRLKHLLEPRLKELGLEELFWNIEMPLVRVLADMELN 534

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKT 645
           G+ +D + L++ S   +  +   E+ IY  +GE FN+ SPKQ+GDILF KL+      KT
Sbjct: 535 GVCLDTEALQETSRIFTDRMKQYEQEIYKEAGETFNIGSPKQVGDILFGKLQIMDKPKKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTGQ+ T+ + L+ +    +P+++NIL +R + K+ STY D+LP  IN RT  +HT ++ 
Sbjct: 595 KTGQYVTSEEVLQSLEA-KHPVVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQ 653

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A T TGRL+S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH++   
Sbjct: 654 AQTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDE 713

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            + + F    DIHR  AA+I+  +I+KV+   R+ AK  NF IIYGI+ + LA ++ IP 
Sbjct: 714 NMMEAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPN 773

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA + I+ YFH FP +  Y+E+ K   R  GY ET+F RR +  +INS  +++R   ER
Sbjct: 774 GEARELIQDYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAER 833

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAPIQG+ ADI + AM+ + K  ++  + +KM+LQ+HDEL F V  EE     +I++
Sbjct: 834 NAINAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEEREQVERIVI 893

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M+ AC     L VPL  +    +NW E
Sbjct: 894 EEMQNAC----QLNVPLTADAGWGSNWLE 918


>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
 gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
          Length = 931

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 349/989 (35%), Positives = 537/989 (54%), Gaps = 86/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y +YKANRP +P+ +  Q+  +  +  A G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDDMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D++ V +K+G+ PE+++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVDGVKEKFGVAPEQIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA-ALLLQEYGNLENI-----LINASRIKQKKRRENILE-YAET 239
           GDS DNIPG+PGIG KTA  LL+   G L+ +     ++    I+  K     LE + E 
Sbjct: 181 GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEM 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +L  ++ DVP+ + L+ L L + +  +L+     LEF        + YD      
Sbjct: 241 AFLSYQLATIKIDVPLDVGLDDLHLIEPDREKLLELYTLLEFK-------SWYD------ 287

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                              EI RDT  K  +  + ++    ++            ++ + 
Sbjct: 288 -------------------EIQRDT--KRVELKTANEVAPVVDVS----------VEAVI 316

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P+    YT I++      W++KL      +F   T  +DA  ++ + ++ +   Q  +
Sbjct: 317 SVPVEA-IYTTILDQATFDLWLKKLNDAKLFAFDTETTGIDAHQAQLVGVSFAV--QPHE 373

Query: 420 TSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            ++  +   +I +     +D+         +L  LK   E+   LKIG + K+D  +L  
Sbjct: 374 AAYIPLTHAYIGVPDQLDRDT---------VLRALKPLLEDPTKLKIGQHAKFDMNILAN 424

Query: 479 Y--------GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI+++G   D ML SYVL++  + HD+ S+A+K+L Y   + ++I      
Sbjct: 425 CAIDGDPAQGITVQGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVSFQDIAGKGAK 484

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E+++V L+L   L  +L  +  L  V   ++ P++ V++++E 
Sbjct: 485 QLTFDQIALEQAGPYAAEDADVTLRLHQELHAQLAAIPSLASVLTDIEMPLVPVLARIER 544

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D  LL   S E+   ++ LE   ++++GE FNL SPKQLG IL+ KL  P   KT
Sbjct: 545 QGALVDAQLLGVQSIELGNKMVELERQAFEIAGEAFNLGSPKQLGAILYEKLGMPVLKKT 604

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             GQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 605 GKGQASTAEDVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 664

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A   TGRL+S +PNLQNIP++T  G++IR+AF++P   KL++ADYSQIELRI+AH++K  
Sbjct: 665 AVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSKDE 724

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F ++LD+H   AAE+F V + +V+   RR AK INF +IYG+   +L   + +  
Sbjct: 725 GLMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDT 784

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF R+PG+ EY+E+T+      GYVET FGRR++  +I+S K   R   ER
Sbjct: 785 KTAKAYIDVYFARYPGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNKPQERAAAER 844

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM+ V   L    L  K++LQ+HDELV EV E+ +   S+ + 
Sbjct: 845 TAINAPMQGTAADIIKKAMVRVDNWLTASGLDAKVILQVHDELVLEVREDLVAEVSEKVR 904

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M  A      L VPL V + V +NW E
Sbjct: 905 EHMSAAA----QLDVPLLVEVGVGDNWDE 929


>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
 gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
          Length = 902

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 354/984 (35%), Positives = 550/984 (55%), Gaps = 115/984 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+++RA+YA P L+ +  G P  A+ G  NML KL+   + +    + AV+FD
Sbjct: 16  LILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVAVVFD 70

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+++Y  YKANR ++P  L  Q+ PL  +  +A G P I  +G+EADD+IAT  
Sbjct: 71  PKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEI-IRALGFPLIIKEGYEADDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A+++G  V + + DKDL Q+V+    L +T+ +  ++ + V++K+G+PPEK++    L
Sbjct: 130 KKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTL 189

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
           TGD+ DNIPG+P +G KTA   L +Y ++EN++ +A  IK K              +   
Sbjct: 190 TGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKGK--------------VGEN 235

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L     D+P                             L+ R+ T           V+ D
Sbjct: 236 LRACIDDLP-----------------------------LMRRLVT-----------VISD 255

Query: 306 INTTENKGIAIETEIDRDTTIK---TSQFSS-----LSDQTSKINSEQTPQKLFLERLQK 357
           +   EN    I+TE +R+  I+     +F S     L++Q  K+ + Q            
Sbjct: 256 LPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQDKKVAAFQ------------ 303

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I + K  ++W++KL      +F   T   +A  +K + ++ +     
Sbjct: 304 ----------YATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH- 352

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL--TKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  E  ++ L      D TG       +E+L  LK   E+ +   I  N+KYD  V
Sbjct: 353 -------EAAYVPLW----HDYTGAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEV 401

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           L + G+++R    D +L SYVL+S  + HD+ ++A K+L       +++       I  +
Sbjct: 402 LAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFN 461

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590
            ++  +   +A E+++V LQL   L P +  EK L  V+E+++ P++ ++ QME+ G+ +
Sbjct: 462 HVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLV 521

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L+  S E+   +  LE+  Y L+G +FNLSSPKQL  IL+ +LK P   KT  GQ 
Sbjct: 522 DTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ- 580

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA+++ Q    D P+ K ILE R L+K+K+TY D LP  ++  ++R+HT Y+   T T
Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIPI+T+ G+KIRRAFI+PP  ++++ADYSQ+ELRI+AH++K   L + 
Sbjct: 641 GRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHVSKDPSLIKA 700

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIHR  AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L  QL I R  A +
Sbjct: 701 FDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQE 760

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF R+P +HEY++K +      GYVET+FGRR++  +I++     R   ERAAINA
Sbjct: 761 YIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINA 820

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI + AMI V   L+ + +   +++Q+HDELVFEV E+++      I  +ME+
Sbjct: 821 PMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEE 880

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + L VPL V++ V  NW E
Sbjct: 881 A----VALSVPLVVDVGVGGNWDE 900


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 351/986 (35%), Positives = 529/986 (53%), Gaps = 89/986 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     S  AV
Sbjct: 32  ENPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----SQMAV 86

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 87  VFDAKGKTFRNDMYEEYKAQRPPMPDDLRTQIEPLHNIIRALGLPLVCIPGVEADDVIGT 146

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A KEG AV I + DKD+ QLV     L +T+    +  E V +K+G+ PE ++ L 
Sbjct: 147 IATQASKEGRAVLISTGDKDMAQLVDDNVTLINTMTNTIMGPEEVTEKFGVGPELIIDLL 206

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++E IL    +I        K     + E+ 
Sbjct: 207 ALQGDKADNIPGLPGVGEKTAVAMLTGAGSVEQILAAPEKIPALGFRGSKTMPAKLAEHG 266

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  +LS +L  ++ DV +    + L++   N   L+ +   +EF + +  V         
Sbjct: 267 EMLKLSYELATIKLDVEMEQDWKELVIAPANKDDLVKYYGEMEFKRWLAEV--------- 317

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       +NKG                  S+ S   S    E  PQ +  E    
Sbjct: 318 -----------LDNKG-----------------SSAQSSDNSADEEEVVPQAIDAE---- 345

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+  + + +W+++L      +    T ++D   +K + I        
Sbjct: 346 ----------YETILTHEALDKWIEQLTKADLIAIDTETTSLDYMTAKLVGI-------- 387

Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
              SF VE     ++ L+ H   D+  +     E ++ LK   E+    K+G N+KYD  
Sbjct: 388 ---SFAVEVGKAAYLPLA-HDYLDAPEQLDF-DEAIAKLKPLLEDPKLKKVGQNLKYDIS 442

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           +    GI ++G   D ML SYV +S  S H++  +A K+L +   + +EI       +  
Sbjct: 443 IFANVGIKLQGVAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLTF 502

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I       +A E++++ L+L   L  +L  E KL  V+  ++ P++ V+S++E  G+ 
Sbjct: 503 NQIDLETAAPYAAEDADITLRLHQHLWARLEKEPKLASVFTDIELPLVQVLSKIERQGVL 562

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID  +L Q S EI+ ++  LE++ ++++GE FNLSSPKQL  + F KL +P   KT  G 
Sbjct: 563 IDSMMLGQQSQEIAISIDKLEQDAFEIAGETFNLSSPKQLQALFFEKLGYPVIKKTPKGA 622

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L ++   D P+ K IL+ R L+K+KSTY D LP  +N ++ RVHT Y  A+  
Sbjct: 623 PSTAEEVLVELAL-DYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQSGRVHTSYHQANAA 681

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S EPNLQNIPI+T+ G++IR AFI+   KK+++ADYSQIELRI+AH+++   L  
Sbjct: 682 TGRLSSSEPNLQNIPIRTEEGRRIRHAFIAQEGKKVLAADYSQIELRIMAHLSQDKGLLT 741

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH+  AAE+FGV+  +V+ + RR AK +NF +IYG+S F LA QL IPR EA 
Sbjct: 742 AFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRGEAQ 801

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI  YF R+PG+ +Y+E T+      GYV T++GRR++   I    +  R   ERAAIN
Sbjct: 802 KYIDTYFDRYPGVLKYMEDTRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAIN 861

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           AP+QG+AADI ++AMI++   +E        M++Q+HDELVFEV  ++     + I   M
Sbjct: 862 APMQGTAADIIKKAMINIASWIESETHGEITMIMQVHDELVFEVDSDKAEALKEQICKMM 921

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
             A    ++L V L     + +NW++
Sbjct: 922 ADA----VSLDVELLAEGGIGDNWEQ 943


>gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
          Length = 897

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 355/976 (36%), Positives = 540/976 (55%), Gaps = 92/976 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T   
Sbjct: 59  AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+G+ + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +++   AL 
Sbjct: 119 NLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDASDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ + + +E L  +  +   LI      EF  L+       D D ++I+      
Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIK------ 285

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                              I TSQ      Q + +  E                      
Sbjct: 286 -------------------IATSQA-----QAADVAIE---------------------- 299

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +   + +LE   S +F   TD+++ + +  + ++      K+  +F +  
Sbjct: 300 -YITITTQTQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               L V   Q   G       +L  LK  F +   +K+ HN K+D+ VL +Y I + G 
Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540
            +D M+M+YVL S    HD+ S++++ L     +YT   I  + K    +D++    V +
Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K+L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+VN+    +W +
Sbjct: 880 NVPLEVNVDSGKSWDQ 895


>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
 gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
          Length = 938

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 360/997 (36%), Positives = 539/997 (54%), Gaps = 84/997 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A        DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNKPTLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGAMYGVLNMLRRL----RADYVHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P
Sbjct: 113 ADDVIGTLAKMASEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A  +K  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E   LS  LV ++TDV +     H  L D         L++L  T              
Sbjct: 232 LEQLPLSYDLVTIKTDVDL-----HTELSDG--------LESLRRT-------------T 265

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS--LSDQTS---KINSEQTPQKLF 351
                +V+D      +    E E        T  F S  + +Q +   +I  E+ P+   
Sbjct: 266 PKWAQLVVDFKRWGFRTWLKEAESRMHEAQNTDLFGSEHIGEQAALAMEIQPEKQPE--- 322

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                 L+  P   D Y  +         + KL           T ++DA ++  + I+I
Sbjct: 323 ------LAPVPEKLD-YQAVTTEAQFAALLDKLAQADKIGIDTETTSLDAMNAALVGISI 375

Query: 412 STLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           +         F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+K
Sbjct: 376 A---------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLK 424

Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
           YD+ V   Y I++ G   D ML SY+++S    H +  ++++WL     T + +      
Sbjct: 425 YDQHVFANYDIALNGIAGDSMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAK 483

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            I    ++  Q  E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+ +ME  
Sbjct: 484 QISFADVAIVQATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVLFEMERN 542

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--K 644
           G+QID+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    K
Sbjct: 543 GVQIDRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKK 602

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T  G   T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+
Sbjct: 603 TAKGGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA 661

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A  +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++  
Sbjct: 662 QAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGD 721

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I 
Sbjct: 722 KTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLSID 781

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
              A ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I++  ++ R   E
Sbjct: 782 NISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAE 841

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEI 937
           RAAINAP+QG+A+D+ +RAMI V   L        D  L +K+++Q+HDELV EVPE E+
Sbjct: 842 RAAINAPMQGTASDLIKRAMIDVSCWLSECEASPWDDLLQSKLIMQVHDELVLEVPEAEL 901

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               + +   M K     +N  VPL   + V  NW+E
Sbjct: 902 DLVKEKLPQIMAKVDEGMLN--VPLVAEVGVGMNWEE 936


>gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 350/973 (35%), Positives = 540/973 (55%), Gaps = 60/973 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS +++RAF+A P L+    G   NAI G  + L KL++  +     +H AVIFD
Sbjct: 4   FILVDGSYYLFRAFHALPPLTTSQ-GQTTNAIKGALSALQKLMRRMQP----THMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+ + P+YKA+RP +P  L  Q+P +    +  GIP + + G EADD+I T   
Sbjct: 59  TPEPTFRHMLSPEYKAHRPAMPSELSTQIPYLHAIIKGLGIPLLLLPGAEADDLIGTLAC 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A +EG  V I + DKD+ QLV+    L D+ +++ +D + VI K+G+ P++++    L 
Sbjct: 119 RAVREGHHVLISTGDKDMAQLVNDHIKLEDSFRDQVLDHDGVIAKFGVRPDQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G  TAA LL +Y  +  IL NA  IK  K  E+I E A+   L+ +L
Sbjct: 179 GDASDGIAGVPGVGKVTAAKLLNQYQTIGGILENAHLIK-GKVGESIRENADKIPLNHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+P+ +    L L   + P L      LEF  L+  +    + D    EP     
Sbjct: 238 ASIVCDLPLELDWHELKLGRPDVPALKKLYAELEFRALLQSLEHPNNPDNQPQEP----- 292

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                K  + E +  +D   K  +  S+++Q   +                    PI+  
Sbjct: 293 ----QKSYSFE-DTKKDDIPKLLETLSITEQPVAL--------------------PISEA 327

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  +++  +    V++L+   +  F + T+T    +     + +S   Q        E 
Sbjct: 328 KYHTVLDKTEFLALVERLKA--APRFAVDTETTSLDYRLARIVGVSFALQAG------EA 379

Query: 427 IFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
            +I +      D  G  +    + +L  LK   EN    KIG ++KYD  V + +GIS+ 
Sbjct: 380 FYIPIG----HDYMGAPEQLDAQFVLDILKPILENPAIGKIGQHMKYDAHVFNNHGISLA 435

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540
           G+  D ML SYVL+   + H +  +AQ +L+YT    ++I       +  ++I   +   
Sbjct: 436 GWAFDTMLASYVLNPTATRHGMDDLAQYYLNYTTTTFEQIAGKGAKQLTFNQIELEKAAP 495

Query: 541 HAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+     +L  + +L  +    + P   V+ +ME  GI++D   L ++ 
Sbjct: 496 YAAEDADITWRLYEHFSKELAKIPRLERLLLDAEMPAAQVLYEMENNGIRLDIPFLAELG 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
                 +L+LE +  +L+G+ FN+SSPKQLG+ILF KL    G KT +GQ+ T    LE+
Sbjct: 556 QRFGAQILTLESHAIELAGQPFNVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   D+PII  ILE+R LSK+KSTY DSL    +  TQRVHT Y  A   TGRL+S +PN
Sbjct: 616 I---DHPIIATILEYRSLSKLKSTYTDSLIAQSDPATQRVHTSYHQAIAATGRLSSTDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+ ++G++IR+AFI+P  + +++ADYSQIELR++AH ++   L + F +  DIH+
Sbjct: 673 LQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIHQ 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ +E V+   RR AK INF ++YG+S F LA QL + R+EA +YI  YF R+
Sbjct: 733 ATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAFGLAKQLNLSRAEAQEYITLYFSRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +H+Y+E T+    + GYVET+ GRR++ + I +  + +R   ERAAINAP+QGSAADI
Sbjct: 793 PSVHDYMENTRALAAEQGYVETVLGRRLYMENIRAGNAMVRQAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMISV +SL   K   KMLLQ+HDELVFEV E++    + ++   M      + ++ 
Sbjct: 853 IKLAMISVDQSLP--KEHAKMLLQVHDELVFEVDEDKADEVTALLKKLMPAVLQGRADIA 910

Query: 960 VPLKVNIKVSNNW 972
           VPL++ +    NW
Sbjct: 911 VPLEIEVGRGVNW 923


>gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
 gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
          Length = 944

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 354/991 (35%), Positives = 546/991 (55%), Gaps = 84/991 (8%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D    ++RA+YA P L R   GLP+  + GF N+  K ++    + +  +  V+FD  
Sbjct: 6   IIDAYGLLFRAYYALPNL-RTSYGLPIGGVYGFINIFLKYIE----KHVTDYLVVVFDTG 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY-I 127
           +  FR+ IYP+YK NRPK+P+ L+PQ  L+R A  AF I + E+ G+EADD+IAT +   
Sbjct: 61  SKNFRHNIYPEYKGNRPKLPDDLIPQFSLLREAVNAFNIASEEVVGYEADDVIATLSKKY 120

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
            + +G  VT++++DKDL+QL+    C++D +K + I+ E V  K+GI   +++   +LTG
Sbjct: 121 CKLQGVKVTVVTSDKDLLQLLKYNICIFDPIKNKYIEEEDVQSKFGISSNQLLDFLSLTG 180

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DN+PGIPGIG KTAA LL ++G+L+N+L++   +K  K RE+I +Y++ A LSR+LV
Sbjct: 181 DASDNVPGIPGIGVKTAAKLLNDFGSLDNLLLHVHEVKTNKCRESITQYSDQAILSRQLV 240

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC----DAANIEPVV 303
            L  +V I   +E    +      L+ FLK  E   L+N+V   +       A N     
Sbjct: 241 TLCDEVDICGDIEKYSFQISGIQELVEFLKKYELQSLMNKVDKFFKVGNASSAVNQNTSS 300

Query: 304 LDINTTENKGIAIE-----TEIDR-----DTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            D     +K I  E      E+D+     + +   +Q +S SD+T  +  ++        
Sbjct: 301 SDKTMGGDKVIHHEPQSSMNEVDKFFKVGNASSAVNQNASSSDKT--MGGDKVIHHELQS 358

Query: 354 RLQKLSQY-PINNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMD-----AFHSK 405
            + K+ ++  + N S T   N     + +   E I   + S K+  +        AF+ +
Sbjct: 359 SMNKVDKFFEVGNTSSTVNQNASSSDKTMGGSEVIHYSTESLKVFLENCKGEGIMAFYME 418

Query: 406 PIAIAIST--LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                I +  L  KDD       ++ID           K+ +T + L  +K      + L
Sbjct: 419 MADNVIDSVSLSYKDDI-----LLYID-----------KDHVT-DALELIKPVLGLNYVL 461

Query: 464 KIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           K+ +++K   L+     + +  F+DIM+MSY+L      H +    Q+ ++Y  K+ + +
Sbjct: 462 KVIYDVK--TLLKVIPDVEIVAFDDIMIMSYILSPSVHDHSL----QEIINYNVKQDVVN 515

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            K++I +  +     +                    L V +L  +YER++KP+I V+  M
Sbjct: 516 VKTAITLLLLHKLLKK-------------------NLFVNQLYTIYERVEKPLIRVLDSM 556

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+ ID D+LK +S+  S+ +  LE  IY L+G +FN++S KQLG +LF K+      
Sbjct: 557 EKVGMLIDIDILKTLSSTFSEKVSVLENEIYRLAGTEFNIASSKQLGTVLFDKMGIKKSK 616

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           K  +G + T A+ L  +   +  I   IL+WR  +K+KSTY D+L   IN  + R+HTFY
Sbjct: 617 KLSSGSYSTDAEVLNDLVFNEIEIADKILQWRHFTKLKSTYTDALGKQINSNSGRIHTFY 676

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           S+ ST TGRL+S  PNLQNIPI+++ G  IRRAF++    KL+SADYSQIELRI+AHIA 
Sbjct: 677 SMISTATGRLSSSNPNLQNIPIRSEEGNAIRRAFVARKGYKLVSADYSQIELRIMAHIAG 736

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
           +      F    DIH + A +IF    + +   +RR AK+INF IIYG+S F LA QL I
Sbjct: 737 VQAFKDAFFLDQDIHSITAEQIFCT--QSLDKNLRRKAKSINFGIIYGMSAFGLAKQLGI 794

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            RSEA  YI  YF  +P I  Y+   K + +  GY  TIFGR+    +INS  ++ RN +
Sbjct: 795 SRSEANAYIDNYFKSYPEIQSYMNNIKIYAKTYGYTRTIFGRKCFIRDINSSNAAARNFS 854

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAAINAP+QG++ADI + +MI     L D      ++LQ+HDEL+FE+ EE +  A ++
Sbjct: 855 ERAAINAPLQGTSADIIKMSMI----HLFDKITHGSLILQVHDELLFEILEEYVDYAVEV 910

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   ME      + L VPLKV+I++  NW +
Sbjct: 911 ITKVMEGI----VKLSVPLKVDIRIGTNWAD 937


>gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 921

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 347/992 (34%), Positives = 535/992 (53%), Gaps = 102/992 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y NLE +     R   K     + E+ E
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEKVATLPIR-GAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ D    +PL+                  +E  +L         C    
Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELDQL--------HC---- 265

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                               E DRDT ++     +F S  +   + ++ +  Q+L +E  
Sbjct: 266 -------------------GEPDRDTLMELYAELEFKSWIEDLQR-DAMRAGQELVVEE- 304

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  I+       W++KL+     +F   ++  DA  ++ + ++ + + 
Sbjct: 305 ---PTVAAKEAAYEVILEQDRFDAWLKKLQAAPLFAFVTQSNGNDAQRAQLVGLSFA-IQ 360

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+    K+G + K+   +
Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINL 411

Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           L          +GI ++G   D +L SYVLDS  + HD  S+  K+L++T    ++I   
Sbjct: 412 LANCAIGGDQAHGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPVNFQDIAGK 471

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V+++
Sbjct: 472 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFETRLAAIPTLQPVLSDIEMPLVPVLAR 531

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALECEAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT RVHT 
Sbjct: 592 SKTATGQPSTAEAVLSELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRVHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A
Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ 
Sbjct: 712 RDEGLLHAFRNDLDVHRATAAEVFGVELEGVTNDMRRSAKAINFGLIYGMSAFGLAKQIG 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R  
Sbjct: 772 VDRKQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPSLRKG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+
Sbjct: 832 AERMAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVEQISE 891

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   M  A      L VPL V + V NNW E
Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153]
          Length = 930

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 358/986 (36%), Positives = 533/986 (54%), Gaps = 70/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIK-GKVGENLRAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R A  +    
Sbjct: 232 LPRLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E        ERL
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAEMPS-----ERL 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 PEKAVAPEKLD-YQAVTTEAQFSALLDKLSQADTIGIDTETTSLDAMNAALVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 846 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928


>gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 925

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 343/992 (34%), Positives = 537/992 (54%), Gaps = 102/992 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 10  LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 64

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 65  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 125 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 184

Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y NLE +     R   K     + E+  
Sbjct: 185 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIR-GAKTLAAKLEEHRA 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ D    +PL+                  +E  +L         C    
Sbjct: 244 MAFLSYELATIKID----VPLD------------------IELEQL--------HC---- 269

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                              +E DRD  ++     +F S  +   + ++++  Q+L +E  
Sbjct: 270 -------------------SEPDRDKLMELYAELEFKSWIEDLQR-DAKRAGQELVVEE- 308

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  I+       W++KL+     +F   ++  DA  ++ + ++ + + 
Sbjct: 309 ---PTVAAKEAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 364

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+ + +K+G + K+   +
Sbjct: 365 PHEAAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINL 415

Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           L           GI ++G   D +L SYVLDS  + HD  S+  K+L++T    ++I   
Sbjct: 416 LANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 475

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V+++
Sbjct: 476 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEMPLVPVLAR 535

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 536 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 595

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 596 SKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 655

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A
Sbjct: 656 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 715

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   L   F N LD+HR  A+E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ 
Sbjct: 716 KDEGLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 775

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+RN 
Sbjct: 776 VDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNG 835

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            +R AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+
Sbjct: 836 AQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 895

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   M  A      L VPL V + V NNW E
Sbjct: 896 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 923


>gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14]
 gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14]
          Length = 937

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 358/992 (36%), Positives = 535/992 (53%), Gaps = 75/992 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLRAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D      I  L+                C  
Sbjct: 232 LPRLPLSYDLVTIKTDVDL-----HAELSDG-----IESLR----------------CTT 265

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 266 PKWAQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKATAPERLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK    N    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHK------LATKMLLQIHDELVFEVPEEEITTASQ 942
           NAP+QG+A+D+ +RAMI V + L + +      L +K+++Q+HDELV EVPE E+    +
Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASLWDCLKSKLIMQVHDELVLEVPEAELDFVKE 905

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   M K  +    L VPL   + V  NW+E
Sbjct: 906 KLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 935


>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 870

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 339/920 (36%), Positives = 516/920 (56%), Gaps = 68/920 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T     + I+               S S+  + ++ E             
Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLE 912
           QG+AADI +RAMI+V   L+
Sbjct: 849 QGTAADIIKRAMIAVDAWLQ 868


>gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013]
          Length = 983

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 359/994 (36%), Positives = 538/994 (54%), Gaps = 78/994 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 46  MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 157

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 158 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 217

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 218 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLRAA 276

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEFTKLINRVATTYDCD 295
                LS  LV ++TDV +   L   I    C  P+    +  ++F +   R   T+  +
Sbjct: 277 LPRLPLSYDLVTIKTDVDLHAELSDGIESLRCTTPKWAQLV--VDFKRWGFR---TWLKE 331

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL-ER 354
           A +      D +   +  I  +  +D +T+                 SE+ P+K    E+
Sbjct: 332 AESRMHEAADGDLFGSDTIGEQAALDMETS-----------------SERLPEKAVAPEK 374

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L            Y  +         + KL           T ++DA ++  + I+I+  
Sbjct: 375 L-----------DYQAVTTEAQFATLLDKLSQAEKIGIDTETTSLDAMNAALVGISIA-- 421

Query: 415 DQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                  F+  E ++I   V  S  +  +    +++L +LK + EN    KIG N+KYD+
Sbjct: 422 -------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGHLKPYLENPALKKIGQNLKYDQ 472

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I 
Sbjct: 473 HVFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIG 531

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+Q
Sbjct: 532 FADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQ 590

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKT 647
           ID+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  
Sbjct: 591 IDRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAK 650

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A 
Sbjct: 651 GGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAV 709

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRLAS  PNLQNIPI+T+ G+K+RRAF +P    ++SADYSQIELRI+AH++    L
Sbjct: 710 AITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTL 769

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    
Sbjct: 770 IAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLS 829

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAA
Sbjct: 830 AKNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAA 889

Query: 888 INAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTA 940
           INAP+QG+A+D+ +RAMI V + L        D  L +K+++Q+HDELV EV E E+   
Sbjct: 890 INAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFV 949

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + +   M K  +    L VPL   + V  NW+E
Sbjct: 950 KEKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 981


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 340/994 (34%), Positives = 550/994 (55%), Gaps = 72/994 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M ++  LFL+D  + I+R +YA    P ++ K  G+  +AI GF N L+ +++  + +  
Sbjct: 1   MAEQKRLFLLDAFALIFRGYYALIKNPRINSK--GMDTSAIMGFTNSLFDVIKREKPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E++P+YKANR + P+ +   +P ++   +A  IP +  +G+EA
Sbjct: 57  --HLAVCFDKGGSVERTEMFPEYKANRLETPDAIKIAVPFIQEILKAMHIPVVVQEGWEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DDII T    AEKE + V +++ DKD  QLVS    +Y   +     + + I+ WGIP  
Sbjct: 115 DDIIGTLAKQAEKEDYKVYMVTPDKDFGQLVSENIFMYRPAR-----MGNGIEIWGIPEI 169

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   PE+++    + GD+ DNIPG+PG+G KTA   + EYG++E +L N  ++K  
Sbjct: 170 QKRFGVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFINEYGSMEGLLANTDKLK-G 228

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +E + E  E   LS+KL  + T V +    +   +   +  ++      LEF +L ++
Sbjct: 229 KMKEKVEENGELGILSKKLATICTTVDVQFDAKDYEMSVPDNEKVQEIFNELEFRRLKDQ 288

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
               +  D              EN   + ET       +K     +   Q S   S+   
Sbjct: 289 FVKIFSED------------KNENNAQSNET-----PAVKKVVAEAGGGQFSLFGSDGNA 331

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
              F E   + +   I +  Y  + +   ++ ++Q L    S  F   T  ++   ++ +
Sbjct: 332 PATFKESSGRKTIQDIPH-VYQSVASGMAMKLFMQNLMKQNSVCFDTETTGLNPLTAELV 390

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            IA S    K          +I      +Q         +EI+  L+ FFE+E   KIG 
Sbjct: 391 GIAFSWEAGK--------GFYIPFPEDKNQ--------AQEIIETLRPFFESEMIEKIGQ 434

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----K 522
           N+KYD  VLH+Y I ++G F D ML  Y+++     H++  +++ +L+YT   I     K
Sbjct: 435 NLKYDIKVLHKYNIQVKGKFFDSMLAHYLINPDMR-HNMDVLSETYLNYTPVSITELIGK 493

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K+ + +  +   +  E+A+E++++  QL    RP+L       ++  ++ P++ V++ 
Sbjct: 494 KGKNQLSMRDVPLEKQTEYAVEDADITYQLAQHFRPELAEASTEELFNTIEIPLLHVLAD 553

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641
           ME+ GI +D++ L  +S +++ ++  L+  IY  + ++FN++SPKQLG+ILF KLK    
Sbjct: 554 MELEGINLDKEFLGSLSEDLNNDIKELQSKIYKEADQEFNIASPKQLGEILFDKLKLVDK 613

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTGQ+ +TA+D+      D+ II+N+LE+R LSK+KSTY D+LP  + +RT RVHT
Sbjct: 614 PKKTKTGQY-STAEDVLSYLAKDHEIIRNVLEYRGLSKLKSTYVDALPLQVEERTGRVHT 672

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAH 760
            Y      TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A 
Sbjct: 673 DYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDEDYTLLAADYSQIELRIIAA 732

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   + + F+N  DIH   A+++F V +++V+ + R +AKT+NF IIYG+S F L+ Q
Sbjct: 733 LSEEDTMIEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVSAFGLSNQ 792

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             + R+EA + I+ Y+  +P +  Y+ +  +F R NGYV+T+ GRR +  +IN   + +R
Sbjct: 793 TDLSRTEAKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGRRRYLKDINGSNAIVR 852

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQGSAADI + AMI++HK L +    TKMLLQ+HDELVF+V + E+   
Sbjct: 853 GAAERNAVNAPIQGSAADIIKIAMINIHKKLSEGNYKTKMLLQVHDELVFDVHKAELEEL 912

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +I   ME A      L VPL V + + +NW E
Sbjct: 913 KSLIQSEMENAY----KLAVPLDVELGLGDNWLE 942


>gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
 gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
          Length = 975

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 356/986 (36%), Positives = 535/986 (54%), Gaps = 70/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 46  MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 157

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 158 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 217

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 218 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 276

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R A  +    
Sbjct: 277 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTAPKW---- 313

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 314 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 365

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 366 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 421

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L +LK + EN    KIG N+KYD+ 
Sbjct: 422 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGHLKPYLENPALKKIGQNLKYDQH 473

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 474 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 532

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 533 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 591

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  + + FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 592 DRAELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 651

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 652 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 711 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 771 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 831 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 891 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 949

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 950 AK--VGGGLLDVPLVAEVGVGENWEE 973


>gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 358/981 (36%), Positives = 540/981 (55%), Gaps = 102/981 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPTMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+++YP+YKA+R  + + L  Q+  +    +  G P I   G EADD+I T   
Sbjct: 59  AKGKNFRHQLYPEYKAHRKDMDDELRVQIEPLHQIIKKMGFPVIIEDGVEADDVIGTLAQ 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+G+ + I + DKD+ QLV+    LYD++K    D+  V+KK+ I P++++   AL 
Sbjct: 119 NLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLKKYQISPQQIIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ +      L +ED                           C AA+        
Sbjct: 238 ATIKCDLEL-----DLTVEDLK-------------------------CRAAD-------- 259

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSL-----SDQTSKINSEQTPQKLFLERLQKLSQY 361
                K   IE            +F SL     +D T  ++S+     + +E        
Sbjct: 260 -----KAYLIEA-------YTRYEFKSLLKDFDNDNTKMLSSQVQAASIAIE-------- 299

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  I     +   + +LE   S +F   TD+++ + +  + ++      K+  +
Sbjct: 300 ------YIAITTQSQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCA---KEGRA 350

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F +      L V   Q   G       +L  LK  F +    K+ HN K+D+ VL +Y I
Sbjct: 351 FYIPLQHRYLGV-PQQLELGF------VLDKLKPLFADVKKAKVAHNFKFDEKVLSKYAI 403

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISD 535
            + G  +D M+M+YVL S    HD+ S++++ L     +YT   I  + K    +D+I  
Sbjct: 404 EINGKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKHQQTLDQIDI 460

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDL 594
             V ++A E++++  +L+   +  L  ++ L+ +Y  ++ P+  +++QME TG++ID   
Sbjct: 461 EIVAKYAAEDADITFRLFNHFKALLEQDETLYKLYCEIEMPLTIILNQMEKTGVKIDATK 520

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L Q SA +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ 
Sbjct: 521 LIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSE 580

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L Q+   D  I   I+++R LSK+K+TY D LP  ++  + RVHT Y+   T+TGRL+
Sbjct: 581 EVLVQL-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDVNS-RVHTSYNQTGTVTGRLS 638

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  S
Sbjct: 639 SSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQS 698

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIH   AAE+ G+ I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  
Sbjct: 699 LDIHSATAAEVLGIGIDEVSSEQRRKAKAINFGLIYGMSAFGLAKQLEIPRAEAQEYIDI 758

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF+R+P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG
Sbjct: 759 YFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQG 818

Query: 895 SAADITRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           +AADI ++AMI V+   L+++    KM++Q+HDELVFEV + ++      I   ME A  
Sbjct: 819 TAADIIKKAMIDVNTMILQEYNSEVKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA-- 876

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             + L VPL+VN+    +W +
Sbjct: 877 --VKLSVPLEVNVDAGESWDQ 895


>gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 921

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 343/992 (34%), Positives = 538/992 (54%), Gaps = 102/992 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y NLE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ D    +PL+                  +E  +L         C    
Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELDQL--------HC---- 265

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                              +E DRD  ++     +F S  +   + ++++  Q+L +E  
Sbjct: 266 -------------------SEPDRDKLMELYAELEFKSWIEDLQR-DAKRAGQELVVEE- 304

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  I+  +    W++KL+     +F   ++  DA  ++ + ++ + + 
Sbjct: 305 ---PTVAAKEAAYEVILEQEQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+ + +K+G + K+   +
Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINL 411

Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           L           GI ++G   D +L SYVLDS  + HD  S+  K+L++T    ++I   
Sbjct: 412 LANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 471

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V+++
Sbjct: 472 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEMPLVPVLAR 531

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 592 SKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A
Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   L   F N LD+HR  A+E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ 
Sbjct: 712 KDEGLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+RN 
Sbjct: 772 VDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            +R AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+
Sbjct: 832 AQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   M  A      L VPL V + V NNW E
Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568]
          Length = 937

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 356/993 (35%), Positives = 539/993 (54%), Gaps = 77/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMAQLTAP-DGAPTGAMYGVLNMLRRL----RADYVHDY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR+E++ DYKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 56  CAVVFDAKGKNFRHEMFSDYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 111

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 112 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 171

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +A+ IK  K  EN+   
Sbjct: 172 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHAAEIK-GKVGENLQAA 230

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R    +    
Sbjct: 231 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 267

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 268 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 319

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 320 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 375

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 376 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 427

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 428 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 486

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 487 ADVAIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 545

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 546 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 606 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 665 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 725 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I++  ++ R   ERAAI
Sbjct: 785 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941
           NAP+QG+A+D+ +RAMI V + L        D  L +K+++Q+HDELV EV E E+    
Sbjct: 845 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 904

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +   M K     ++  VPL   + V  NW+E
Sbjct: 905 EKLPQIMAKVGGGLLD--VPLVAEVGVGENWEE 935


>gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 921

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 343/992 (34%), Positives = 538/992 (54%), Gaps = 102/992 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y NLE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ D    +PL+                  +E  +L         C    
Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELDQL--------HC---- 265

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                              +E DRD  ++     +F S  +   + ++++  Q+L +E  
Sbjct: 266 -------------------SEPDRDKLMELYAELEFKSWIEDLQR-DAKRAGQELVVEE- 304

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  I+  +    W++KL+     +F   ++  DA  ++ + ++ + + 
Sbjct: 305 ---PTVAAKEAAYEVILEQEQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+ + +K+G + K+   +
Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINL 411

Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           L           GI ++G   D +L SYVLDS  + HD  S+  K+L++T    ++I   
Sbjct: 412 LANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 471

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V+++
Sbjct: 472 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEMPLVPVLAR 531

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 592 SKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A
Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   L   F N LD+HR  A+E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ 
Sbjct: 712 KDEGLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+RN 
Sbjct: 772 VDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            +R AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+
Sbjct: 832 AQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   M  A      L VPL V + V NNW E
Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
 gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
          Length = 918

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 355/990 (35%), Positives = 538/990 (54%), Gaps = 98/990 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     +  AV
Sbjct: 6   DNPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----TQMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRNE+Y +YKA RP +P+ L  Q+ PL R+  +A G+P + I G EADD+I 
Sbjct: 61  VFDAKGKTFRNEMYSEYKAQRPPMPDDLRNQIEPLHRI-IKALGLPLVCISGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A KEG AV I + DKD+ QLV     L +T+    +    V +K+G+ PE+++ L
Sbjct: 120 TIATQASKEGRAVLISTGDKDMAQLVDDNITLINTMTNTIMGPAEVTEKFGVGPERIIDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G++ NIL    ++ +      K     I+E+
Sbjct: 180 LALQGDKADNIPGLPGVGEKTALAMLTGVGSVANILAAPEKMPELGFRGSKTMPAKIIEH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+  +LS +L  ++ DV +      L +E  N   LI     +EF + +  V        
Sbjct: 240 ADMLKLSYELATIKLDVELEQDWHQLSIEPANKDELIKCYGEMEFKRWLAEV-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                    ++   +K  A E+E D                           KL +E   
Sbjct: 292 ---------LDNKGDKATAAESEDDAPAA-----------------------KLDIEV-- 317

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I+  + + +W++KL++    +    T +++   +K + I       
Sbjct: 318 ----------EYDIILTLEQLDRWIEKLKSAELIAIDTETTSLNYMEAKLVGI------- 360

Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEIL-SYLKKFFENEHFLKIGHNIKYD 472
               SF VE     ++ L+ H   D+     L K ++   L+   E+E+  K+G N+KYD
Sbjct: 361 ----SFAVEAGKAAYLPLA-HDYIDAP--EQLDKAVVFEKLQPLLEDENLKKVGQNLKYD 413

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
             +    GI + G + D ML SYV +S  S H++  +A K+L +   + +EI       +
Sbjct: 414 ISIFANAGICLLGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQL 473

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITG 587
             ++IS      +A E++++ L+L   L  +L  + +L  V+  ++ P+++ +S +E  G
Sbjct: 474 TFNQISLETAAPYAAEDADITLRLHQHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQG 533

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  LL Q S E+++ +  LE   ++++G+ FNLSSPKQL ++ F KL +P   KT  
Sbjct: 534 VLIDSMLLGQQSEELARKIDELEHKAHEIAGQAFNLSSPKQLQELFFEKLGYPVIKKTPK 593

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + L ++   D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+
Sbjct: 594 GAPSTAEEVLVELAL-DYPLPKIILEHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQAN 652

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S EPNLQNIPI+T+ G++IR AFI+P  KK+++ADYSQIELRI+AH+++   L
Sbjct: 653 AATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDKGL 712

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH+  AAE+F V+  +V+   RR AK +NF +IYG+S F LA QL IPRSE
Sbjct: 713 LTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRSE 772

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+ +Y+E+T+      GYV T+FGRR++   I    +  R   ERAA
Sbjct: 773 AQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAA 832

Query: 888 INAPIQGSAADITRRAMISVHKSLE---DHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           INAP+QG+AADI ++AMI++   +E   D ++   M++Q+HDELVFEV E +  +    +
Sbjct: 833 INAPMQGTAADIIKKAMINIANWIETETDGEII--MIMQVHDELVFEVDEAKADSLQAKV 890

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M  A      L V L     + +NW++
Sbjct: 891 CELMAAAA----KLDVELLAEAGIGDNWEQ 916


>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
 gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
          Length = 920

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 340/989 (34%), Positives = 550/989 (55%), Gaps = 95/989 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA   TP ++ K  GL  +AI GFCN L ++L         +H  V
Sbjct: 4   LFLLDAYALIYRSYYAFLRTPRINSK--GLNTSAIMGFCNTLNEVLTKEH----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+   TFR+E++P YKA R + PE +   +P+++   +A  IP +++ GFEADD+I T
Sbjct: 58  AFDH-GKTFRHEVFPAYKAQREETPEDIRQSVPIIKQILEAMRIPILQVDGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175
                  +G    +++ DKD  QL+ P   +        Y+T+ E++++      K+GIP
Sbjct: 117 VATRFGTDGIDTFMLTPDKDYGQLIGPRVFIFRPRHGGGYETLGEKEVE-----SKYGIP 171

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ L AL GDS DN PG PG+G KTAA L+ ++G+++N+L +   IK  K R+ I 
Sbjct: 172 TPAQVIDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNLLRHTDEIK-GKLRDKIE 230

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E  ++S+ L  +RTDVP+ + L+ L +E  +  +L    + LEF  L N++      
Sbjct: 231 NAVEDIKMSKLLATIRTDVPLQLSLDELKVEQPDEVKLRRIFEELEFKTLANKL------ 284

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                      +N +E K   +ET++D   ++ T +     ++T+    +  P +     
Sbjct: 285 -----------LNKSELKPKNVETQLDL-FSVNTPRGQEELEKTNYETHKTVPHE----- 327

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y  I N +++ +      T    S    T + DA  ++ + ++ S  
Sbjct: 328 -------------YKLIDNEEEMDRLCDFFMTKEFVSIDTETTSTDAIRAELVGLSFSVE 374

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKY 471
           + K          ++ L  +            +E L Y++ F   +EN++ LKIG NIKY
Sbjct: 375 ENK--------AFYVPLPANR-----------EEALKYVRIFKPLYENDNILKIGQNIKY 415

Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KS 526
           D  VL+ YG++++G   D M+  Y++      H++  +A+  L Y     +E++  + K 
Sbjct: 416 DYEVLNNYGVTLQGKMFDTMIAHYLIQP-ELHHNMDYMAETLLGYRTIHIEELIGPKGKK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
              +  +S + + E+A E++++ L+L  LL P+L    L  ++  ++ P++ V++ ME+ 
Sbjct: 475 QKNMRDLSPTDICEYAAEDADITLRLKHLLEPRLKELGLEELFWNIEMPLVRVLADMELN 534

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKT 645
           G+ +D + L++ S   +  +   E+ IY  +GE FN+ SPKQ+GDILF KL+      KT
Sbjct: 535 GVCLDTEALQETSRIFTDRMKQYEQEIYKEAGETFNIGSPKQVGDILFGKLQIMDKPKKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTGQ+ T+ + L+ +    +P+++NIL +R + K+ STY D+LP  IN RT  +HT ++ 
Sbjct: 595 KTGQYVTSEEVLQSLEA-KHPVVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQ 653

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A T TGRL+S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH++   
Sbjct: 654 AQTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDE 713

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            + + F    DIHR  AA+I+  +I+KV+   R+ AK  NF IIYGI+ + LA ++ IP 
Sbjct: 714 NMMEAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPN 773

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA + I+ YFH FP +  Y+E+ K   R  GY ET+F RR +  +INS  +++R   ER
Sbjct: 774 GEARELIQDYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAER 833

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAPIQG+ ADI + AM+ + K  ++  + +KM+LQ+HDEL F V  EE     +I++
Sbjct: 834 NAINAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEEREQVERIVI 893

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M+ AC     L VPL  +    +NW E
Sbjct: 894 EEMQNAC----QLNVPLTADAGWGSNWLE 918


>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
 gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
          Length = 911

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 355/978 (36%), Positives = 547/978 (55%), Gaps = 81/978 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS+++RA+++ P L+    G    AI G  NML  L+    ++   SH  V
Sbjct: 6   ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVINMLKSLI----RQYDPSHMVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKANRP +P+ L  Q+  +    +A G P I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +  IA ++   V + + DKD+ QLV+    L +T+ +   D + V++K+G+ P+ ++   
Sbjct: 121 FARIASEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDTISDPDTVVEKFGVGPDLIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--KRRENILEYAETAR 241
           AL GD +DNIPG+ G G KTA   LQ+YG+L+ ++ NA  IK K  ++  N L++     
Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLQKYGSLQGVMDNAGEIKGKIGEKLANALDHLP--- 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS +L  ++ DV +   L+   L++ N   LI+     EF + +  +      DA     
Sbjct: 238 LSYELATIKCDVEVESDLDTFKLQEPNKDELIALYGECEFRRWLAELLEN-PSDAQ---- 292

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L + + E +   +E E   +T +  +QF +L                 +E+L     +
Sbjct: 293 THLAVPSQETELPKVE-EAHYETILTEAQFDTL-----------------IEQLNGADLF 334

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             + ++ +       +      ++   +A   +  D  DA    P  +++  + Q     
Sbjct: 335 AFDTETTSLDYMQAQLVGMSFSVKAGEAAYLPVAHDYPDA----PEQLSLEFVMQ----- 385

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-- 479
            K+  I  D     ++   G+N      L Y K    N  +   G  IK+D + L  Y  
Sbjct: 386 -KLGPILAD----ANKAKVGQN------LKYDKSVLANAGYELNG--IKFDTM-LESYVF 431

Query: 480 -GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
             +  R   D + + Y+     S  DIA   +K L++ + E+ K+               
Sbjct: 432 NSVGTRHDMDSLALKYLGHKNISFEDIAGKGKKQLTFNQIELDKAAP------------- 478

Query: 539 QEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L  +L PK+   EKL  V+E ++ P++ V+S +E TG+ ID  +L  
Sbjct: 479 --YAAEDADITLRLHEVLWPKIEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSSMLGA 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S  + + L+ LE+  ++++GE FNLSSPKQL  +LF KL+ P   KT  G   +TA+++
Sbjct: 537 HSQRLGERLIELEKEAFEIAGEPFNLSSPKQLQVLLFEKLELPIIKKTPKGA-PSTAEEV 595

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            Q    D P+ K I+E R LSK+KSTY D LP  +N++TQRVHT Y  A T TGRL+S +
Sbjct: 596 LQELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTD 655

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G++IR AFI+    K+++ADYSQIELRI+AH+++   L   F N LD+
Sbjct: 656 PNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANGLDV 715

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AAE+FGV+++ V+  MRR AK +NF +IYG+S F LA QL +PR EA  YI +YF 
Sbjct: 716 HSATAAEVFGVDLDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFE 775

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RFPG+ EY+E T+    +NGYVETIFGRR+H  EIN+   + R   ERAAINAP+QG+AA
Sbjct: 776 RFPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAA 835

Query: 898 DITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI ++AM+SV++ + +    T K+L+Q+HDELVFE+  +     ++ I   M +A     
Sbjct: 836 DIIKKAMLSVNQWVYEQAPNTVKLLMQVHDELVFEIKTDCAEAYTKQICELMSQAA---- 891

Query: 957 NLRVPLKVNIKVSNNWQE 974
           +L VPL V      NW++
Sbjct: 892 SLDVPLIVEADEGENWEQ 909


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 347/992 (34%), Positives = 555/992 (55%), Gaps = 75/992 (7%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +FL+D  + IYR++YA    P ++ K  G+  +AI GF N+L +L++N + E IA   
Sbjct: 9   DKVFLLDAYAIIYRSYYAFLKNPRINSK--GVNTSAIFGFVNILDELIRNEKPEYIA--- 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            ++FD    TFR+E Y +YKA R K PE +   +P ++   +A+GI   E++G+EADD+I
Sbjct: 64  -IVFDPGGKTFRHETYEEYKAQRQKTPEDIKNAIPYIKRIIEAYGIGIFEMEGYEADDVI 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----LYDTVKEEKIDIEHVIKKWGI-PP 176
            T     + EGF V +++ DKD  QLV          Y +   + + +E +  K+G+  P
Sbjct: 123 GTMAKRLQGEGFGVYMMTPDKDYAQLVDTNIFQYKPRYGSAGFDVLGVEEIKAKYGLDSP 182

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +M+ L  L GD+ DNIPG PG+G KTA  L++++G+++N+L N  ++     +  +++ 
Sbjct: 183 AQMIDLLGLMGDASDNIPGCPGVGEKTATKLIKDFGSIDNLLHNTDKLT-GALKTKVVQN 241

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E   LSR L  ++TD+PI + +E +  +  +  ++      LEF  L++R         
Sbjct: 242 REQIVLSRFLATIKTDIPIDLSIEEIKRKPSDTGKMRELFTELEFRTLLHRHQLG----- 296

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTT-IKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
              + +V    T+  +G   +T+    T+ I+ +   S  D T  I + +T         
Sbjct: 297 ---DIIVKQETTSHTQGSLFDTQAKEQTSAIQKATNESPQDTTDIIPTLKT--------- 344

Query: 356 QKLSQYPINN--DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                  IN+    Y  I    +I + ++ L +  +  F   T ++D F ++ + ++ + 
Sbjct: 345 -------INDTRHEYILIQTDDEIDRLIEILGSHSAFCFDTETTSLDTFEAQIVGLSFAV 397

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             QK          ++ L      D   K   T+EIL       E+    K G N+KYD 
Sbjct: 398 EPQK--------AYYVALP-----DDKQK---TEEILRRFAPLLEDASIEKTGQNMKYDI 441

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL---KSRKS 526
            VL  YGI + G   D M+  Y+L      H++  +A+ +L Y      E+    K++KS
Sbjct: 442 SVLGNYGIGVGGRMFDTMIAHYLLQP-ELRHNMDYMAEVFLGYRTIHFGELFDDDKTKKS 500

Query: 527 SIPID---KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
             PI+   K+   +++++A E++++ LQL  +   KL    L +++  ++ P++ ++++M
Sbjct: 501 GKPIEDIRKVELGKLKDYACEDADITLQLKNIFGQKLCESSLKNLFFDIEMPLVPILAKM 560

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSG 642
           E  G+ ID   L   +  + + L  +E +I        N+SSPKQ+G++LF +L+     
Sbjct: 561 ESNGVLIDDFALASYAETLKRELQKIERDILAYVDLPINISSPKQIGELLFERLRIVEKP 620

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTGQ++T  + L+++    +PIIK ILE R L K+ STY ++LP  IN +T ++HT 
Sbjct: 621 TKTKTGQYRTDEETLQKLR-NRHPIIKLILEHRGLKKLLSTYVEALPKLINPKTNKIHTS 679

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++     TGRL+S  PNLQNIP++ D G++IR+AFI+ P   L+SADYSQ+ELRI+AH++
Sbjct: 680 FNQTVVSTGRLSSSNPNLQNIPVRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLS 739

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               +   F +  DIH   AA IF V IE+V+  MRR AKT NF IIYGIS F L+ +L 
Sbjct: 740 GDRNMLSAFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYGISAFGLSERLD 799

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR EAA  I  YF  FP +  Y+E+     R+NG V+T+FGR+++  +INS  + +R  
Sbjct: 800 IPRKEAAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGRKLYLPDINSQNAGVRGF 859

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAPIQG+AADI + AMI V +++  H   ++M+LQ+HDELVF VP EE+    Q
Sbjct: 860 AERIAINAPIQGTAADIIKIAMIKVDEAIRHHNYRSQMMLQVHDELVFNVPTEEVDEFRQ 919

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + H+ME A     +LRVPL V+I + +NW E
Sbjct: 920 SVKHAMETAA----SLRVPLIVDIGIGHNWLE 947


>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
 gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
          Length = 930

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 353/989 (35%), Positives = 540/989 (54%), Gaps = 76/989 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A        +G P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNKPTLLLVDGSSYLYRAYHAMGQNLSAPNGAPTGAMYGVLNMLRRL----RADYVHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR+E++PDYKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P
Sbjct: 113 ADDVIGTLAKMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A  +K  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDV----PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
                LS  LV ++TDV     ++  LE L        +L+   K   F   + + A + 
Sbjct: 232 LPQLPLSYDLVTIKTDVDLHTELSDGLESLRRTTPKWAQLVVDFKRWGFRTWL-KEAESR 290

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             +A N + +    +  E   +A+ET+ ++   +  +                 P+KL  
Sbjct: 291 MHEAQNTD-LFGSEHIGEQAALAMETQPEKQPELAPA-----------------PEKL-- 330

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                          Y  I         + K+    +      T ++DA ++  + I+I+
Sbjct: 331 --------------DYQAITTEAQFAALLDKMSQADTIGIDTETTSLDAMNAALVGISIA 376

Query: 413 TLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                    F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KY
Sbjct: 377 ---------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKY 425

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527
           D+ V   Y I++ G   D ML SY+++S    H +  ++++WL     T + +       
Sbjct: 426 DQHVFANYDIALNGIAGDSMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQ 484

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           I    ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G
Sbjct: 485 ISFADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNG 543

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KT 645
           +QID+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +IL  K+  P+    KT
Sbjct: 544 VQIDRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILVDKMGIPTKGLKKT 603

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             G   T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ 
Sbjct: 604 AKGGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQ 662

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++   
Sbjct: 663 AVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSIIVSADYSQIELRIMAHLSGDK 722

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I  
Sbjct: 723 TLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDN 782

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A ++I RYF R+PGI EY+++TK      G+VET+FGRR++  +I +  ++ R   ER
Sbjct: 783 ISAKNFIDRYFARYPGIAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAER 842

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QG+A+D+ +RAMI V + L  + L +K+++Q+HDELV EVPE E+    + + 
Sbjct: 843 AAINAPMQGTASDLIKRAMIDVSRWL-SYDLKSKLIMQVHDELVLEVPEAELDLVKEKLP 901

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M K     +N  VPL   + V  NW+E
Sbjct: 902 QIMAKVDEGMLN--VPLVAEVGVGMNWEE 928


>gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7]
          Length = 921

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 347/992 (34%), Positives = 534/992 (53%), Gaps = 102/992 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +     R   K     + E+ E
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIR-GAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ D    +PL+                  +E  +L         C    
Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELDQL--------HC---- 265

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                               E DRDT ++     +F S  +   + ++++  Q+L +E  
Sbjct: 266 -------------------GEPDRDTLMELYAELEFKSWIEDLQR-DAKRAGQELTVEE- 304

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  I+       W++KL+     +F   ++  DA  ++ + ++ + + 
Sbjct: 305 ---PTVEAREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+   +K+G + K+   +
Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPEKIKVGQHAKFAINL 411

Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           L           GI ++G   D +L SYVLDS    HD  S+  K+L++T    +EI   
Sbjct: 412 LANCAIDGDQAQGIDLQGVRFDTILESYVLDSTAPRHDRDSLVAKYLTHTPINFQEIAGK 471

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V+++
Sbjct: 472 GAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLAR 531

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPVL 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 592 SKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A
Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ 
Sbjct: 712 QDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R ++  Y+ RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   S+R  
Sbjct: 772 VDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+
Sbjct: 832 AERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   M  A      L VPL V + V NNW E
Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
 gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
          Length = 892

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 335/977 (34%), Positives = 539/977 (55%), Gaps = 103/977 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGSS+IYRA++A   LS   +G P NA+ GF  ML K++    K+   +H AV+FD
Sbjct: 8   LYLLDGSSYIYRAYFAIRHLSSP-NGFPTNALYGFTQMLLKVM----KDRAPAHVAVVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              +TFRNE++P YKA R  +PE L  Q+  ++   +AF IPA+E+ G+EADDII T   
Sbjct: 63  AGKITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFSIPALELPGWEADDIIGTIAR 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE  G    +++ DKDLMQ+VS    L DT+K++   I  V +K+G+ P ++V + AL 
Sbjct: 123 KAEAAGMDCVVVTGDKDLMQIVSEHVTLLDTMKDKSFGIPDVHEKFGVGPGRVVDVLALW 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+PGIG  TA  L+QE+G L+ +L  A  +K K   E ++E+A+ ARL    
Sbjct: 183 GDTSDNIPGVPGIGEVTAKKLMQEFGTLDELLARACEVKGKTG-ERLIEFADQARLC--- 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
                                                   R   T DCDA  IE  + D 
Sbjct: 239 ----------------------------------------RTLATIDCDAP-IEYNIDDF 257

Query: 307 NTT--ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP-I 363
             T  +N+ +A           +   F++L                    L+ L+  P +
Sbjct: 258 AVTPPDNRRLA--------ALFREYGFATL--------------------LKDLTSSPTL 289

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           + D Y  ++   ++++ V+KL+   + +  + T +++   +  +  A+S L         
Sbjct: 290 SCDHYALVLTEAELRELVEKLKKAPAFAIDLETTSLNPLDASIVGYAVSCLAH------- 342

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            E  +I +  H    +  +      +        + +   KIG N+KYD  VL + G+ +
Sbjct: 343 -EAYYIPIG-HRYLGAPEQLPEALVLELLGPLLTDPDR-KKIGQNLKYDYQVLQQSGVEL 399

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539
            G + D ML +Y+++  R+S  + ++A ++L +   +  E+  + K  +   ++   +  
Sbjct: 400 AGIWCDTMLAAYLVNPSRNSQGLDALALEYLDHRMISYAEVAGTGKCELNFSEVDLDRAG 459

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            ++ E+++    L  +L PK+  + +  +   ++ P++ +++ ME+ G+++D +L+K++S
Sbjct: 460 PYSCEDADATYLLHEILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKELS 519

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQWKTTAQDL 657
               + L+ LE  I++  G  FN++SPKQLG++LF ++    G KTK  TG W T  ++L
Sbjct: 520 TGFGRQLIELEAKIHEHCGGSFNINSPKQLGEMLFERMGLAVGKKTKGKTG-WSTNVEEL 578

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   ++ + + +L++R +SK+KSTY D+LP  ++ +T RVHT Y+ A T TGRL+S +
Sbjct: 579 ERL-AEEHEVARLLLQYRSISKLKSTYTDALPRLVDPKTGRVHTSYNQAITNTGRLSSSD 637

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G+ IRRAFI+ P   ++SADYSQIELR+LAH++    L + F    DI
Sbjct: 638 PNLQNIPVRGEEGRGIRRAFIAEPGSLILSADYSQIELRVLAHLSGDRVLCEAFAAGEDI 697

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+  E V+ +MRR AK INF +IYG   F LA +L +   +A  +I+ YF 
Sbjct: 698 HRRTAAEVFGMFPELVTAEMRRQAKVINFGVIYGQGAFSLAKELGVAPKQAKAFIENYFE 757

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R  G   ++++        G+V TI GRR+   EI S   + R   +R A N PIQGSAA
Sbjct: 758 RHSGARSFLDRCIAEAETCGFVTTILGRRLQIPEIASKNGNARAFAQRNATNYPIQGSAA 817

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V + + + K+A+++++Q+HDELVFEVP  E      ++   ME A LP   
Sbjct: 818 DIIKAAMIRVTRRMLEEKVASRLIMQVHDELVFEVPRNERELMEDLVRAEMEGA-LP--- 873

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPLKV++    NW E
Sbjct: 874 LSVPLKVDLNFGLNWAE 890


>gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090]
 gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2]
 gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
 gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090]
 gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
          Length = 930

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 357/986 (36%), Positives = 535/986 (54%), Gaps = 70/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +A  IK  K  EN+   
Sbjct: 173 DQIRDYLALIGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHAPEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R A  +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                + +D      +    E E + +T      F S S  + + +N+E   +K    R 
Sbjct: 269 ---AQLAVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAEIPSEK----RA 321

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K +  P   D Y  +         + KL    +      T ++DA +++ + I+I+   
Sbjct: 322 EKATA-PEKLD-YQAVTTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++     D ML SY+++S    H +  ++ +WL     T + +       I  
Sbjct: 429 VFANYGIALNNIAGDAMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAKQISF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEARLRAQMD-DKQLEMYEKMELPVAQVLFEMECNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +PP   ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F++  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI+V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 846 NAPMQGTASDLIKRAMINVRNWLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928


>gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
 gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
          Length = 942

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 340/994 (34%), Positives = 550/994 (55%), Gaps = 74/994 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M ++  LFL+D  + I+R +YA    P ++ K  G+  +AI GF N L+ +++  + +  
Sbjct: 1   MSEKKRLFLLDAYALIFRGYYALIKNPRINSK--GMDTSAIMGFMNSLFDVIRREQPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E++P+YKANR + P+ +   +P ++   +A  IP IE  G EA
Sbjct: 57  --HLAVCFDKDGSAERTELFPEYKANRDETPDAIRVAVPWIQDILKAMHIPCIERSGLEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DDII T    AE +G+ V +++ DKD  QLV+  T +Y   +     + + I+ WGIP  
Sbjct: 115 DDIIGTLARQAEAQGYQVYMVTPDKDFGQLVTENTFMYRPAR-----MGNGIEIWGIPEV 169

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   PE+++    + GD+ DNIPG PG+G KTA   + ++G+LE +L N  ++K  
Sbjct: 170 QKRFGVERPEQVIDYLGMMGDASDNIPGFPGVGDKTAKKFIDQFGSLEGLLENTEQLK-G 228

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +E I+E AE  +LS+KL  +  D  +T   +   L   +  ++    + LEF +L ++
Sbjct: 229 KMKERIIENAELGKLSKKLATICVDCDVTFDEKDFELSMPDSQKVQELFEELEFRRLRDQ 288

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
               +  +  +  P V    TTE       T   ++    + QFS      +    EQ  
Sbjct: 289 FLKLFSGETES-GPAV---GTTE-------TAKKQNREAGSGQFSLFE---ADAKGEQVE 334

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                + ++ +S        Y  + +  + + +++ L       F   T ++D   ++ +
Sbjct: 335 AYSGRKTIKDVSHL------YQAVGDGMERKLFLKSLMAQNRVCFDTETTSLDPLEAELV 388

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            IA S    K             L V   +++ G      E+L  L+ FFE++   K+G 
Sbjct: 389 GIAFSWEAHKG----------FYLPVPEGREAAG------EVLEELRPFFESDTIEKVGQ 432

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILK 522
           N+KYD  VL  YGI +RG   D ML  Y+++     H++  +A+ +L+YT       I K
Sbjct: 433 NLKYDIKVLSTYGIPVRGPLFDTMLAHYLINPD-MRHNMDVLAETYLNYTPVPISDLIGK 491

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K+ + +  +      E+A+E++++ LQL  L  P+L   +   +++ ++ P++ V++ 
Sbjct: 492 KGKNQLSMRDVPLEDQTEYAVEDADITLQLAQLFGPELREAQTEELFKEIEIPLLRVLAD 551

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641
           ME+ GI +D   L+++S E+ K++  L   IY+ +GE+FN+ SPKQLG+ILF K+K    
Sbjct: 552 MELEGINLDTGFLEKLSGELEKDIEGLVGKIYEAAGEEFNIGSPKQLGEILFDKMKLVDK 611

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KT+TGQ+ +TA+D+      ++ I++ +L++R L+K+KSTY D+LP  +   T RVHT
Sbjct: 612 PKKTRTGQY-STAEDVLSGLAKEHEIVQMVLDYRGLTKLKSTYVDALPQQVAPSTGRVHT 670

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y      TGRL+S  PNLQNIPI+T+ G++IR+AFI   P  +L++ADYSQIELRI+A 
Sbjct: 671 DYMQTVAATGRLSSNNPNLQNIPIRTERGRQIRKAFIPRSPEYQLLAADYSQIELRIIAA 730

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   + + F+   DIH   AA++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q
Sbjct: 731 LSEEDTMIESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQ 790

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             + R+EA + I  Y+  +P +  YI    +F R++GYV+T+ GRR +  +IN   + +R
Sbjct: 791 TNLSRTEAKELIDTYYKTYPKLRNYISDQIDFAREHGYVQTVLGRRRYLKDINGSNAVVR 850

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQGSAADI + AMI +++ L +    T+MLLQ+HDELVF+    E  T 
Sbjct: 851 GAAERNAVNAPIQGSAADIIKIAMIRIYQKLREGNFKTRMLLQVHDELVFDCYRGEADTV 910

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           S +I   ME A      L VPL V++     W E
Sbjct: 911 SALIKSEMESA----YELAVPLVVDMGFGETWLE 940


>gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945]
          Length = 930

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 356/986 (36%), Positives = 533/986 (54%), Gaps = 70/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R    +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK    N    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP+ I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPDMISPQDNRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +PP   ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++ K      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRAKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 846 NAPMQGTASDLIKRAMIDVRNWLSD-GIDSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928


>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
 gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
          Length = 926

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 356/978 (36%), Positives = 534/978 (54%), Gaps = 72/978 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + LVDGSS+++RA++A P L  S+ H   P  AI G   M+ +L      +   S   V+
Sbjct: 9   VVLVDGSSYLFRAYHALPPLMTSKNH---PTGAIKGVIAMIRRL----DLDFPGSKIVVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN++YPDYKANRP +PE L  Q+  +    +  G+P + + G EADD+I T 
Sbjct: 62  FDAKGKTFRNDLYPDYKANRPPMPEDLAVQIEPIHQIVRHMGLPLLIVDGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            + A  +G  V + + DKD+ QLVS    L +T+    +D   V +K+G+ P +++   A
Sbjct: 122 AHEATSKGIDVVVSTGDKDMAQLVSAHVTLINTMTNTYMDNAGVEEKFGVTPAQIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD +DNIPG+   G KTA   LQEY N++N++ NA  IK  K  E + +  ET  LSR
Sbjct: 182 LVGDKVDNIPGVNKCGPKTAVKWLQEYQNIDNLMANADDIK-GKVGEYLRDARETLPLSR 240

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L  ++ DV +   LE L   + N   L+   +  E    +N + +    D     P V 
Sbjct: 241 TLATIKLDVELEFGLEDLQEREQNNSALLELFREYELRSWVNELES---LDPQTTGPAVA 297

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  K  A  +  D +T          + Q+S   S Q   K               
Sbjct: 298 -------KSGADHSTSDHNT----------AHQSSPAESAQPRDK--------------- 325

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y+ I N  ++ +WV++L+     +F   T ++    ++ + +           SF V
Sbjct: 326 --HYSIITNQAELDEWVERLKASELFAFDTETTSLRYMAAEVVGV-----------SFAV 372

Query: 425 ETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
           +  F    V    D  G    L ++ +L+ LK   E+    K+G N+KYDK VL  + I 
Sbjct: 373 QP-FEAAYVPFCHDYMGAPEQLDRDTVLAQLKPLLESPDHKKVGQNLKYDKNVLANHDIC 431

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQV 538
           + G  ED M+ SYVL+S  S H++ ++A  +L   + T + +       +  +++   + 
Sbjct: 432 LEGIAEDTMVQSYVLNSVSSRHNMDALALHYLGEETTTFESLAGKGAKQLTFNQLELDKA 491

Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L   LRP+L    KL  VYE +D P++ V+S+ME  G  I    L+Q
Sbjct: 492 GPYAAEDADITLRLHQALRPQLAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISASTLRQ 551

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+++ +  LE   Y+ +GE FNL SPKQL  I + KL  P   KT  G   +TA+ +
Sbjct: 552 HSQELAERMAELETAAYEAAGETFNLGSPKQLQVIFYEKLGLPVLKKTPKGA-PSTAEPV 610

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            Q     + + + +LE R LSK+KSTY D+LP  I+ RT RVHT Y  A T TGRL+S E
Sbjct: 611 LQELAHRHELPRLLLEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSSE 670

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G++IR+AF++    KL++ADYSQIELRI+AH+++   L   F    DI
Sbjct: 671 PNLQNIPIRSEQGRRIRQAFVAEKGYKLLAADYSQIELRIMAHLSEDKGLLTAFAKGEDI 730

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H+  AAE+FGV +E+V+   RR AK INF +IYG+S F LA QL + R  A  YI RYF 
Sbjct: 731 HKATAAEVFGVTLEEVNTDQRRSAKAINFGLIYGMSAFGLARQLDVERKVAQQYIDRYFE 790

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+  Y++  +    ++GYVET+FGRR++  EIN+    ++   ER AINAP+QG+AA
Sbjct: 791 RYPGVLTYMDNIRKQAHEDGYVETLFGRRLYLPEINTRNKQLQQAAERTAINAPMQGTAA 850

Query: 898 DITRRAMISVHK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI + AMI V +  L ++  + +M +Q+HDEL+ EV EE +    + ++  M  A     
Sbjct: 851 DIIKLAMIEVERWLLAEYPDSARMTMQVHDELIIEVKEEAVEVVREGLIKRMSGAA---- 906

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL V   V +NW +
Sbjct: 907 ELAVPLLVEAGVGDNWDQ 924


>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002]
 gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002]
          Length = 887

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 330/943 (34%), Positives = 510/943 (54%), Gaps = 69/943 (7%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
             NML +L     KE    + A +FD    TFR+E+YPDYKANRP +PE L  Q+  V  
Sbjct: 1   MVNMLRRL----EKEVRFDYSACVFDAKGKTFRDELYPDYKANRPSMPEELASQITAVHD 56

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
             QA G P + + G EADD+I T    AE  G  V + + DKD+ QLVSP   L +T+  
Sbjct: 57  VVQASGWPILVVDGVEADDVIGTLARQAEAAGMQVIVSTGDKDIAQLVSPVVTLVNTMTN 116

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
           E +D   V +K+G+PP  ++    L GD +DN+PG+   G KTA   L++YG+LE ++ N
Sbjct: 117 ETLDEGGVKEKFGVPPGLIIDYLTLIGDKVDNVPGVDKCGPKTAVKWLEQYGSLEAVMAN 176

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFL 276
           A+ I  K   +N+    +     R+L+ ++ DVP+   L    E L+  + + P+LI   
Sbjct: 177 AAAISGKVG-DNLRAALDWLPKGRELITIKCDVPLDAELPQGMETLLHRERDKPKLIELF 235

Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
               F   +                                 E+        +  ++ + 
Sbjct: 236 TRFGFRSWLR--------------------------------EVSDANGSAAADAAAPAS 263

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396
               +N E     LF       +        Y  ++    +  W+ KLE     S    T
Sbjct: 264 ANPGVNGE-----LFGAAEDDEAPAAAVERRYETLLTAAQLDAWLAKLEAAPVVSLDTET 318

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
            ++D   ++ + I+ S  +         E  ++ L+ H +     +       L+ LK +
Sbjct: 319 TSLDQMEARLVGISFSVTEG--------EAAYLPLAHHYA--GVPEQLDLAATLARLKPW 368

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL-- 513
            EN    K+G N+KYD+ VL  +GI++ G  +D +L SYV++S   +H++  +A++ L  
Sbjct: 369 LENPARKKLGQNLKYDRHVLANHGIALAGVADDTLLASYVIES-HLTHNMDDLARRHLGE 427

Query: 514 -SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            + + +EI       I   ++  +    +A E++++ L+L   L  KL   +L  VY  +
Sbjct: 428 STVSYEEICGKGAKQIGFAEVDIAVASNYAAEDADITLRLNRALAGKL-EGRLASVYRDI 486

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+ +V+  ME  G+ ID+  L + S ++   +L LE+  Y  +G+ FNL+SPKQL +I
Sbjct: 487 ELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLEQEAYQQAGQPFNLNSPKQLQEI 546

Query: 633 LFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           LF KL   +    KT +G + T    LEQ+   D+P+ K IL++R L+K+KSTY D LP+
Sbjct: 547 LFGKLGIDTKGVKKTPSGGFSTDESVLEQLAL-DHPLPKLILQYRGLAKLKSTYTDKLPS 605

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            I   T RVHT Y+ A  +TGRL+S +PNLQNIP++T  G+++R AFI+PP  +++SADY
Sbjct: 606 LIRPDTGRVHTNYAQAVAITGRLSSSDPNLQNIPVRTAEGRRVREAFIAPPGHRIVSADY 665

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELRI+AH++    +   F +  DIH+  AAE+FGV  E+V+ + RR AK INF +IY
Sbjct: 666 SQIELRIMAHLSDDANMLAAFASGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLIY 725

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G+S F LA QL I R+ A  YI RYF RFPG+ +Y+++T+   R+ GYVET+FGRR++  
Sbjct: 726 GMSAFGLAAQLDIERNAAQQYIDRYFMRFPGVADYMQRTREMAREQGYVETVFGRRLYLP 785

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           EI +     R+  ERAAINAP+QG+AAD+ + AMI+V + L    L +K+++Q+HDELV 
Sbjct: 786 EIRASNPGRRSGAERAAINAPMQGTAADLIKLAMIAVQRWLVAEGLGSKLIMQVHDELVL 845

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           EVPE E+    + +   M         L+VPL   +    +W+
Sbjct: 846 EVPEAELARVKERLPQIMAGVA----ELKVPLLAEVGAGESWE 884


>gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 921

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 343/992 (34%), Positives = 537/992 (54%), Gaps = 102/992 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y NLE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ D    +PL+                  +E  +L         C    
Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELEQL--------HC---- 265

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                              +E DRD  ++     +F S  +   + ++++  Q+L +E  
Sbjct: 266 -------------------SEPDRDKLMELYAELEFKSWIEDLQR-DAKRAGQELVVEE- 304

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  I+       W++KL+     +F   ++  DA  ++ + ++ + + 
Sbjct: 305 ---PTVAAKEAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+ + +K+G + K+   +
Sbjct: 361 PHEAAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINL 411

Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           L           GI ++G   D +L SYVLDS  + HD  S+  K+L++T    ++I   
Sbjct: 412 LANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 471

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V+++
Sbjct: 472 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEMPLVPVLAR 531

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 592 SKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A
Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   L   F N LD+HR  A+E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ 
Sbjct: 712 KDEGLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+RN 
Sbjct: 772 VDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            +R AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+
Sbjct: 832 AQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   M  A      L VPL V + V NNW E
Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62]
 gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62]
          Length = 930

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 357/986 (36%), Positives = 535/986 (54%), Gaps = 70/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +A  IK  K  EN+   
Sbjct: 173 DQIRDYLALIGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHAPEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R A  +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                + +D      +    E E + +T      F S S  + + +N+E   +K    R 
Sbjct: 269 ---AQLAVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAEIPSEK----RA 321

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K +  P   D Y  +         + KL    +      T ++DA +++ + I+I+   
Sbjct: 322 EKATA-PEKLD-YQAVTTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAVPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++     D ML SY+++S    H +  ++ +WL     T + +       I  
Sbjct: 429 VFANYGIALNNIAGDAMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAKQISF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEARLRAQMD-DKQLEMYEKMELPVAQVLFEMECNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +PP   ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F++  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI+V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 846 NAPMQGTASDLIKRAMINVRNWLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928


>gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries]
 gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries]
          Length = 864

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 330/969 (34%), Positives = 529/969 (54%), Gaps = 138/969 (14%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +VD   F++RA+YA P L     G P+  + GF N+L K L        A + AV+FD  
Sbjct: 20  VVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFDTG 74

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +  FR+ +YP YK NRP++PE LL Q   +R A  A GI + E+  FEADD+IAT +   
Sbjct: 75  SKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKY 134

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
             E   V +I+ DKDL+QL+     ++D +K + +  E+V+ K+G+ P+K++ + ALTGD
Sbjct: 135 ASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLLDVLALTGD 194

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + DNIPG+P IG KTAA L+ ++G+L+N+L  A +++QKK               R++++
Sbjct: 195 ASDNIPGVPSIGVKTAARLINQFGSLDNVLSCAEKVEQKK--------------CREMLI 240

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV--LDI 306
              D       + L+  D     L+S  +A+EF   +N+ A     D+  +   +   ++
Sbjct: 241 QHAD-------QALLSRD-----LVSLQRAVEFDGDLNKYAKKLP-DSEQLLAFLEKYEL 287

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           N+   K             I+     SL     +  + + P+                  
Sbjct: 288 NSLRGK-------------IEQCYQISLESPDRQGGAGEMPES----------------- 317

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
                 +T+D   +++K E +G          + AFH+K   IA  T+++          
Sbjct: 318 ------HTEDPVAFLRKCENVG----------LLAFHAK---IADGTINE---------- 348

Query: 427 IFIDLSVHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
               LSV   ++   T +    +  +   ++   ++  LKI H+ K    ++ R+   + 
Sbjct: 349 ----LSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPDLG 400

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
            F+D+MLMSY LD+G   H +A +A ++L                         Q+    
Sbjct: 401 AFDDVMLMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFPAR 436

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            +  ++QL  ++R KL++++L  VY +L++P++ V+ +M+  G+++D ++LKQ+S +   
Sbjct: 437 MACTLVQLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHG 496

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCG 663
           ++ SLE+ IYDL+G  FN++S +QLG +LF ++   S AK   +G + T A+ L ++   
Sbjct: 497 SIRSLEKEIYDLAGCTFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAE 556

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
              I   +L+WR  SK+KSTY D+L   +   T+RVHT YS+ ST TGR++S  PNLQNI
Sbjct: 557 GVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNI 616

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI++  G +IR+AF++    KL+SADYSQ+EL+I+AHIA +      F    DIH + A 
Sbjct: 617 PIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQ 676

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           +IFG  +    P++RR AK+INF IIYG+SPF LA  + I R EA+ Y+ +YF  +P I 
Sbjct: 677 QIFGDGV--TDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPEIK 734

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y+E  K + R+ GY  T FGR+ +   INS + ++R   ERAAINAPIQG+AAD+ ++A
Sbjct: 735 NYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKKA 794

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           MI++   LE       ++LQ+HDEL+ EVPE  +   ++++   ME       N  VPLK
Sbjct: 795 MINLRNKLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVPLK 846

Query: 964 VNIKVSNNW 972
           V+I V ++W
Sbjct: 847 VDIGVGSSW 855


>gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
 gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13]
 gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40]
 gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
          Length = 921

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 343/992 (34%), Positives = 536/992 (54%), Gaps = 102/992 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y NLE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ D    +PL+                  +E  +L         C    
Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELEQL--------HC---- 265

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                              +E DRD  ++     +F S  +   + ++++  Q+L +E  
Sbjct: 266 -------------------SEPDRDKLMELYAELEFKSWIEDLQR-DAKRAGQELVVEE- 304

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  I+       W++KL+     +F   ++  DA  ++ + ++ + + 
Sbjct: 305 ---PTVAAKEAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+ + +K+G + K+   +
Sbjct: 361 PHEAAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINL 411

Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           L           GI ++G   D +L SYVLDS  + HD  S+  K+L++T    ++I   
Sbjct: 412 LANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 471

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V+++
Sbjct: 472 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEMPLVPVLAR 531

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 592 SKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A
Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   L   F N LD+HR  A+E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ 
Sbjct: 712 KDEGLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+RN 
Sbjct: 772 VDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            +R AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S 
Sbjct: 832 AQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISG 891

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   M  A      L VPL V + V NNW E
Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
 gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
          Length = 932

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 357/988 (36%), Positives = 547/988 (55%), Gaps = 86/988 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + I+R +YA    P ++ K  GL  +AI GF N L ++++  + +    H AV
Sbjct: 5   LFLLDAYALIFRGYYAFIKNPRINSK--GLNTSAILGFMNSLLEVIKKEKPD----HLAV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD      R +++ DYKANR + PE +   +P +    +A  IP IE +G+EADDII T
Sbjct: 59  AFDKGGSVERTKLFADYKANREETPEAIRLAIPYIHEILKALHIPIIEKEGYEADDIIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
            +  AEK+ + V +++ DKD  QLVS    +Y   +     E   ++ V +K+ +  P +
Sbjct: 119 LSKQAEKQNYQVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEKFEVQNPLQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++    + GD++DNIPG+PG+G KTA  LL ++G++EN+L +  ++K  K RENI    E
Sbjct: 179 VIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSMENLLAHTDQLK-GKLRENIESNKE 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS++L  +  DVP+    E   + + +   +    + LEF +L+     TY  +   
Sbjct: 238 KGILSKQLATIMLDVPVRFDEEDFAMSEPDFEAVGRIFEELEFRQLLQNFLRTYQPEMPT 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P V     TE + +++ T+ D         F+     + K NS  TP         +L
Sbjct: 298 APPPVTGNKPTEGQ-LSLFTQGDL--------FAQPQVMSEKKNSTNTPH------FYQL 342

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +  P+      + +  +                F   T +++A  ++ + I+      K 
Sbjct: 343 ADTPMAQQLLLQNLLQQT------------EVCFDTETTSVNALEAELVGISFCWSAHKG 390

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                          +     T K   TK +L   + FFENE   K+G N+KYD  VL  
Sbjct: 391 ---------------YYVPFPTDKVEATK-LLETFRPFFENERIGKVGQNLKYDLKVLQN 434

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI------LKSRKS--SIP 529
           Y I +RG   D M+  Y+L+     H++  +++ +L+YT   I       K+++S  ++P
Sbjct: 435 YNIEVRGALFDTMIAHYLLNPDMR-HNMDILSETYLNYTPIAIESLIGKGKAQRSMRTVP 493

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +D     QV+E+A+E+++V  QL  + +   PK+  EK   +Y  L+ P+I V++ ME  
Sbjct: 494 LD-----QVKEYAVEDADVTWQLKNVFKEEMPKVNAEK---IYTDLEAPLIKVLAAMERE 545

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-T 645
           G+ +D   LK+ +  +  ++  LE  I + +GE FNL+SPKQLGDILF KLK  S  K T
Sbjct: 546 GVNLDVPFLKEYAKTLDADIAQLEATIAEQAGESFNLASPKQLGDILFEKLKIDSKPKKT 605

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTGQ+ T+ + L       + I+ +ILEWRQ+ K+KSTY D+LP  +NK T RVHT Y  
Sbjct: 606 KTGQYATSEEVLAPF-ASKHKIVADILEWRQVQKLKSTYVDALPLEVNKLTGRVHTTYMQ 664

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKI 764
               TGRL+S  PNLQNIPI+T  GQ++R+AFI+  P   L+SADYSQIELRI+A +++ 
Sbjct: 665 TVAATGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEE 724

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             +   F  + DIHR  AA++F V +E+V+ + R HAKT+NF IIYG+S F L+ Q  + 
Sbjct: 725 HNMIDSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTNLS 784

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           RSE+ + I  Y+  +P +  YI K   F +++GYVET+ GRR +  +I+S    +R   E
Sbjct: 785 RSESKELIDTYYATYPNLRNYISKQIQFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAE 844

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+NAPIQGSAADI + AMI +   L   +L T+MLLQ+HDELVF+VP+ E+     +I
Sbjct: 845 RNAVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTELNIVKPLI 904

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +ME A     NL VPL  ++ V +NW
Sbjct: 905 KEAMESA----FNLAVPLVADLGVGDNW 928


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 345/985 (35%), Positives = 550/985 (55%), Gaps = 87/985 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA   +P ++ K  GL  +AI GFCN L ++L   +     +H AV
Sbjct: 4   LFLLDAYALIYRSYYAFINSPRINSK--GLNTSAIMGFCNTLNEVLTKEQ----PTHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+  +TFRNE +P YKA R   PE +   +P+++    A+ IP ++++GFEADDII T
Sbjct: 58  AFDH-GLTFRNEAFPAYKAQREATPEDIKKSVPIIKQILGAYHIPCLQVKGFEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--------DTVKEEKIDIEHVIKKWGIP 175
               + K+G    +++ DKD  QLV     +Y        +T+ E++I  ++ I      
Sbjct: 117 LAMKSGKKGIDTYMLTPDKDYGQLVGEHVWMYRPRHGGGYETLGEKEICAKYSIDS---- 172

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ + AL GD+ DN PG PG+G KTA  L+ ++G++  +L     IK  K RE +  
Sbjct: 173 PLQVIDILALMGDTADNFPGCPGVGEKTAIKLINQFGSINEMLQRTQEIK-GKLREKVEN 231

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E  ++S+ L  +RTDVPI + L+ L +E+ N   L   L  LEF  L NR+       
Sbjct: 232 AIEDIKMSQFLATIRTDVPIDLKLDDLQVEEPNETELAKILHELEFKTLANRM------- 284

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     +N ++N            +T  T++  +L +++S  NS+  P+    E L
Sbjct: 285 ----------LNKSKN------------STKNTNKQLNLFEESSP-NSQVDPKNKSFESL 321

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +S        Y  I N +++++      T    S    T + +A  ++ + ++ S   
Sbjct: 322 KTVSH------EYKLIDNEEEMRKLCDFFLTNKILSLDTETTSTNAMEAELVGLSFSVAP 375

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  ++ +  +  Q        T +I++  K  +ENE  LK+G NIKYD  V
Sbjct: 376 H--------QAFYVPIPANREQ--------TIKIVNLFKPAYENEAILKVGQNIKYDMEV 419

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPI 530
           L RYGI ++G   D M+  Y+L      H++  +A+ +L Y     +E++  R K    +
Sbjct: 420 LSRYGIELKGNLFDTMIAHYLLQP-ELRHNMDYMAEVYLRYQTVHIEELIGPRGKGQKNM 478

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++ + + E+A E++++ LQL  +L PKL   ++  ++ +++ P++ V++QME+ G++I
Sbjct: 479 RDLAPNDIYEYACEDADITLQLKNILEPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRI 538

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQ 649
           D   L++VS   +K +  LE  I+ L+GE FN+SSPKQ+GDILF KL+      KTKTGQ
Sbjct: 539 DTKALQEVSESFTKRMNDLEAQIHQLAGESFNVSSPKQVGDILFEKLQIAEKPKKTKTGQ 598

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ ++L++   G N I+  IL++R L K+  TY D+LP  IN +T  +HT ++   T 
Sbjct: 599 FVTSEEELQKYATG-NEIVTLILDYRGLKKLLGTYVDALPKLINPQTGHIHTSFNQTVTA 657

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++ + G++IR+ FI        SADYSQIELR++AH++    + +
Sbjct: 658 TGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIE 717

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   DIH   AA+++G  ++ V+   R  AK  NF IIYGI+ F LA +L I R EA 
Sbjct: 718 AFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRGEAK 777

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I  YF  FP +  Y+E+ K+  R+ GYVET F RR +  +INS  +++R   ER AIN
Sbjct: 778 QLIDGYFTTFPQVQSYMEQAKDMAREKGYVETFFHRRRYLPDINSQNATVRGFAERNAIN 837

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AMI +++  +   + +KM+LQ+HDEL F V   E     +I++  M+
Sbjct: 838 APIQGSAADIIKVAMIRIYERFKRENIQSKMILQVHDELNFSVLPSEKEQVERIVLEEMQ 897

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L+VPL  +    +NW E
Sbjct: 898 NA----YQLKVPLVADAGWGHNWLE 918


>gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642]
          Length = 921

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 346/992 (34%), Positives = 535/992 (53%), Gaps = 102/992 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVPGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +     R   K     + E+ E
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVATLPIR-GAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ D    +PL+                  +E  +L         C    
Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELDQL--------HC---- 265

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                               E DRDT ++     +F S  +   + ++++  Q+L +E  
Sbjct: 266 -------------------GEPDRDTLMELYAELEFKSWIEDLQR-DAKRAGQELTVEE- 304

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  I+       W++KL+     +F   ++  DA  ++ + ++ + + 
Sbjct: 305 ---PTVEAREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+   +K+G + K+   +
Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKIKVGQHAKFAINL 411

Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           L           GI ++G   D +L SYVLDS  + HD  S+  K+L++T    ++I   
Sbjct: 412 LANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 471

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P++ V+++
Sbjct: 472 GAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLAR 531

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPVL 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 592 SKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A
Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ 
Sbjct: 712 QDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R ++  Y+ RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   S+R  
Sbjct: 772 VDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKG 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+
Sbjct: 832 AERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   M  A      L VPL V + V NNW E
Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 344/996 (34%), Positives = 552/996 (55%), Gaps = 79/996 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFLVD  + I+R +YA    P ++ K  G   +AI GF N L+ +++  + +  
Sbjct: 1   MAAQKRLFLVDAYALIFRGYYAFIKNPRINSK--GFDTSAIMGFMNSLFDVIRREKPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E++ DYKANR   PE ++  +P ++   +A  IP +E+ G EA
Sbjct: 57  --HLAVCFDKEGSEVRTELFSDYKANRDATPEPIMQGIPYIQSILKAMHIPVVELPGCEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DDII T    AEKE + V +++ DKD  QLVS    +Y   +     + + I+ WGIP  
Sbjct: 115 DDIIGTLAKQAEKENYQVYMVTPDKDFAQLVSENIFMYRPAR-----MGNGIEIWGIPEV 169

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   PE+++    + GD++DNIPG+PG+G KTA   L+++G++E +L N  ++K  
Sbjct: 170 QKKFEVERPEQVIDFLGMMGDAVDNIPGLPGVGEKTAKKFLKQFGSMEELLANTDQLK-G 228

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K RE +   AE   LS+KL  +  D  +    E   L   +  ++      LEF +L ++
Sbjct: 229 KMREKVETNAEQGILSKKLARIIIDCDVKFHAEDYELSMPDSEKVQELFDELEFRRLKDQ 288

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL-SDQTSKINSEQT 346
               ++ +  N   V    +  +N           + T    QFS    D + KI S  +
Sbjct: 289 FIKLFNGEEDNQTQVSNSPSAKKN-----------EQTAGAGQFSLFGGDSSEKIESTNS 337

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
                    + L   P     Y K+     ++ ++QKL    S  F   T +++   ++ 
Sbjct: 338 --------RKTLKDTP---HVYQKVDTGLGLRLFIQKLMKQKSVCFDTETTSLNPLEAQL 386

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + IA S    K          ++       +D+  K   T++++  L+ FFE+    KIG
Sbjct: 387 VGIAFSWEGGK--------GYYLPF-----EDNIEK---TQQLIELLRPFFESPEIEKIG 430

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL---- 521
            N+KYD  VL +YGI + G   D M+  Y+++     H++  +A+ +L+YT + I     
Sbjct: 431 QNLKYDIKVLDKYGIKVEGPTFDTMIAHYLINPDM-RHNMDILAETYLNYTPQPISELIG 489

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K+   +  +  ++  E+A E++++  QL      +L   K   ++  ++ P+++V++
Sbjct: 490 KKGKNQKSMRDVPLAEQTEYAAEDADITFQLKEFFEKELDEAKTRKLFNEIEMPLVEVLA 549

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-P 640
            MEI GI +D D LK++S  + +++  LE  IY+ +GE+F +SSPKQLG ILF KL    
Sbjct: 550 DMEIEGINLDLDFLKKLSEALDRDIKELEAKIYEAAGEEFKISSPKQLGIILFEKLALVK 609

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KTKTGQ+ +T++D+      ++ I++++L++R L K+++TY D+LP  + K + RVH
Sbjct: 610 KPKKTKTGQY-STSEDVLSYLAPEHEIVQHVLDYRGLVKLQNTYVDALPGQVEKSSGRVH 668

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRIL 758
           T Y      TGRL+S  PNLQNIPI+T+ G+++R+AFI P +    L++ADYSQIELRI+
Sbjct: 669 TDYVQTIAATGRLSSNNPNLQNIPIRTERGRQVRKAFI-PRSDDYVLLAADYSQIELRII 727

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           A +++   + + F++  DIH   A+++F V +E+V+ + R +AKT+NF IIYG+S F L+
Sbjct: 728 AALSEEETMIKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLS 787

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            Q  + RSE+ + I  Y+  +P +  YI     + R++GYV TI GRR +  +INS  + 
Sbjct: 788 NQTSLSRSESKELIDTYYKTYPKLSNYIADQVAYAREHGYVSTILGRRRYLKDINSQNAV 847

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R   ER A+NAPIQGSAADI + AMI++HK L + KL TKMLLQ+HDELVF+V + E+ 
Sbjct: 848 VRGAAERNAVNAPIQGSAADIIKIAMINIHKKLGEEKLQTKMLLQVHDELVFDVYKPELD 907

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ++I   ME A      L VPL V++ V  +W E
Sbjct: 908 QVKKLIKSEMENAY----QLNVPLDVDLGVGQDWLE 939


>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 933

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 350/987 (35%), Positives = 529/987 (53%), Gaps = 91/987 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     S  AV
Sbjct: 20  ENPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----SQMAV 74

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRN++Y +YKA+RP +P+ L  Q+ PL R+  +A G+P + I G EADD+I 
Sbjct: 75  VFDAKGKTFRNDMYEEYKAHRPAMPDDLRSQIEPLHRI-IRALGLPLVCIPGVEADDVIG 133

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  A KEG AV I + DKD+ QLV     L +T+    +    V +K+G+ PE ++ L
Sbjct: 134 TISTQASKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPSEVTEKFGVGPELIIDL 193

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G+++ IL    ++ +      K     + E+
Sbjct: 194 LALQGDKADNIPGLPGVGEKTALAMLTGAGSIDKILAAPEKMPELGFRGSKTMPAKLAEH 253

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  +LS +L  ++ DV +    + L +   +   LI     +EF + +  V        
Sbjct: 254 GDMLKLSYELATIKLDVELEQDWKDLTIAPADKDELIKCYGEMEFKRWLAEV-------- 305

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                        +     SS S QTS    E   Q +  E   
Sbjct: 306 -----------------------------LDNRSGSSASTQTSTEEDELPKQDIKTE--- 333

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y+ I+   ++ +W+ KL      +    T +++   +K + +       
Sbjct: 334 -----------YSTILTHDELDEWIDKLSKAELFAVDTETTSLNYMEAKLVGL------- 375

Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               SF VE     ++ L+ H   D+  +     E L+ LK   EN    K+G N+KYD 
Sbjct: 376 ----SFAVEAGKAAYLPLA-HDYLDAP-QQLNQAEALAKLKPLLENPEIKKVGQNLKYDM 429

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
            +L   GI ++G   D ML SYV +S  S H++  +A K+L +     +EI       + 
Sbjct: 430 SILANVGIKLQGIAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLT 489

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588
            ++IS      +A E++++ L+L   L P+L  E +L  ++  ++ P++ V+S ME  G+
Sbjct: 490 FNQISLEVAAPYAAEDADITLRLHQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQGV 549

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  LL Q S E+++ +  LE+  Y+++GE FNLSSPKQL  + F KL +P   KT  G
Sbjct: 550 LIDSMLLGQQSEELARTIDELEQKAYEIAGESFNLSSPKQLQVLFFEKLGYPIIKKTPKG 609

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K IL+ R L+K+KSTY D LP  +N +T RVHT Y  A+ 
Sbjct: 610 APSTAEEVLVELAL-DYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANA 668

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIPI+T+ G++IR AFI+   +K+++ADYSQIELRI+AH+++   L 
Sbjct: 669 ATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGRKVLAADYSQIELRIMAHLSQDKGLL 728

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH+  AAE+F V+  +V+ + RR AK +NF +IYG+S F LA QL IPR EA
Sbjct: 729 TAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRGEA 788

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF R+PG+  Y+E+T+      GYV T++GRR++   I    +  R   ERAAI
Sbjct: 789 QKYIDTYFKRYPGVLNYMEETRAIAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAI 848

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI ++AMI+V   + +       +++Q+HDELVFEV  ++     + +   
Sbjct: 849 NAPMQGTAADIIKKAMINVADWIANETDGEITLIMQVHDELVFEVDSDKAEALQEKVCQL 908

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M +A     +L V L     + +NW++
Sbjct: 909 MAEAA----DLDVELLAEAGLGDNWEQ 931


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 351/981 (35%), Positives = 540/981 (55%), Gaps = 79/981 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  GL  +AI GFCN L ++L    KE+  ++  V
Sbjct: 4   LFLLDAYALIYRSYYALLRAPRINSK--GLNTSAIMGFCNTLNEVLT---KEN-PTYIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+   TFR++ +P YKA R + PE +   +P+++   +A+ IP ++  GFEADDII T
Sbjct: 58  AFDH-GKTFRHDAFPAYKAQREETPEDIKASVPIIKDILRAYKIPILQADGFEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPE-KM 179
               A ++G    +++ DKD  QL+     +Y        +I   + + +K+GI    ++
Sbjct: 117 IAIQAGEKGIDTYMLTPDKDYGQLIRKNVKMYRPQHGGGYEILGEKEIAQKYGISSSTQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTAA L+ ++G++EN+L N S++K  K +E +    E 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSVENLLNNTSQLK-GKLKEKVENAVED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S  L  +RTDVP  I +E L L++ +  +L      LEF    N++           
Sbjct: 236 IKMSYFLATIRTDVPTDIKMEDLKLQEPDADKLDEIFTELEFKSFKNKI----------- 284

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                 +N +ENK      E+D    ++ +   ++S   S             E ++  S
Sbjct: 285 ------LNKSENKKKNAIQELDL-FAVEQTDGQTISKNAS------------FETIKTHS 325

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I N +D +     L T  + S    T + +A  ++ + ++ +  + K  
Sbjct: 326 H------EYKLIDNEEDSKILCDFLLTFKNLSLDTETTSTNAIDAELVGLSFAVEENK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +     +           I++  K  +EN+  LKIG NIKYD  VL  Y
Sbjct: 378 ------AFYVAIPAEREK--------ALRIVNIFKPLYENKKILKIGQNIKYDYEVLLNY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDKIS 534
            I ++G   D M+  Y++      H++  +A+ +L+Y     +E++  + K+   +  ++
Sbjct: 424 DIEIKGKMFDTMIAHYLIQP-ELHHNMDYLAEVFLNYQTIHIEELIGPKGKNQKNMRDLN 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V E+A E++++ L+L  +L PKL   K  H++  ++ P+I V++ ME  GI +D + 
Sbjct: 483 PKDVYEYAAEDADITLRLKNVLEPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNA 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653
           L++ S   ++ +   EE IY+ + EKFN+SSPKQ+GDILF K+       KTKTGQ+ T+
Sbjct: 543 LQETSKVFTERMRKYEEKIYEEAAEKFNISSPKQVGDILFGKMHIMEKPKKTKTGQYVTS 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+ I    NPI++NIL +R + K+ STY D+LP  INKRT  +HT ++ A T TGRL
Sbjct: 603 EEVLQSIRA-KNPIVENILNYRGMKKLLSTYVDNLPTLINKRTGHIHTSFNQALTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++TD G++IR+ FI  P     SADYSQIELRI+AH++    + + F  
Sbjct: 662 SSSDPNLQNIPVRTDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSGDENMIEAFRE 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AA+I+   I+KV+   R+ AK  NF IIYGI+ + LA ++ I  SEA D I 
Sbjct: 722 GFDIHRATAAKIWHEEIDKVTDSQRKKAKQANFGIIYGITTYGLAQRMNISNSEAKDLIT 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +  Y+EK K   R+NGY ETIFGRR +  +INS   ++R   ER AINAPIQ
Sbjct: 782 DYFKTFPKVQAYMEKAKEAARKNGYAETIFGRRRYLADINSHNGTVRGFAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GS ADI + AMI +        + +KM+LQ+HDEL F V  EE     QI++  M+ A  
Sbjct: 842 GSEADIIKVAMIKIWNRFRQEGIKSKMILQVHDELNFSVYPEEKEKVEQIVIQEMQNA-- 899

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
              +L VPL  +    NNW E
Sbjct: 900 --FHLDVPLTADAGWGNNWLE 918


>gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013]
          Length = 930

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 356/986 (36%), Positives = 534/986 (54%), Gaps = 70/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R    +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNAALVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++ +WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDSMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAKQIGF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 846 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928


>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
 gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
          Length = 918

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 347/984 (35%), Positives = 530/984 (53%), Gaps = 86/984 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     S  AV
Sbjct: 6   DNPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----SQMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRN++Y +YKA RP +P+ L  Q+ PL R+  +A G+P + I G EADD+I 
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRTQIEPLHRI-IKALGLPLVSISGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A KEG AV I + DKD+ QLV     L +T+    +    V +K+G+ PE ++ L
Sbjct: 120 TIATQASKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPAEVTEKFGVGPELIIDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G ++ IL    ++ +      K     I+E+
Sbjct: 180 LALQGDKADNIPGLPGVGEKTALAMLTGVGGVDKILAAPEKMPELGFRGSKTMPAKIIEH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+  +LS +L  ++ DV +      L +   +   LI     +EF + +  V        
Sbjct: 240 ADMLKLSYELATIKLDVELEQDWHQLSITPADKDELIKCYGEMEFKRWLAEV-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                        +NKG         DTT  T               +    KL +E   
Sbjct: 292 ------------LDNKG---------DTTAATES-----------EDDAPAAKLDIEV-- 317

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I++ + +  W++KL      +    T +++   +K + I+ + ++ 
Sbjct: 318 ----------EYDTILSLEQLDCWIEKLTAAELIAIDTETTSLNYMEAKLVGISFA-VEA 366

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  +E  ++D      +           +   L+   E+E+  K+G N+KYD  + 
Sbjct: 367 GKAAYLPLEHDYVDAPEQLDR---------ALVFEKLQPLLEDENLKKVGQNLKYDISIF 417

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
              GI++RG + D ML SYV +S  S H++  +A K+L +   + +EI       +  ++
Sbjct: 418 ANIGITLRGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQ 477

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I       +A E++++ L+L   L  +L  + +L  V+  ++ P+++ +S +E  G+ ID
Sbjct: 478 IPLETAAPYAAEDADITLRLHQHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLID 537

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LL Q S E+++ +  LE   ++++GE FNLSSPKQL  + F KL +P   KT  G   
Sbjct: 538 SMLLGQQSEELARKIDELEHKAHEIAGEPFNLSSPKQLQALFFEKLGYPVIKKTPKGAPS 597

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++   D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+  TG
Sbjct: 598 TAEEVLVELAL-DYPLPKIILEHRSLAKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATG 656

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIPI+T+ G++IR AFI+P  KK+++ADYSQIELRI+AH+++ T L   F
Sbjct: 657 RLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDTGLLTAF 716

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH+  AAE+F V+  +V+   RR AK +NF +IYG+S F LA QL IPR+EA  Y
Sbjct: 717 AEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRAEAQSY 776

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R+PG+ +Y+E+T+      GYV T+FGRR++   I    +  R   ERAAINAP
Sbjct: 777 IDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAAINAP 836

Query: 892 IQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI ++AMI++ + +E + +    M++Q+HDELVFEV E +  +    +   M  
Sbjct: 837 MQGTAADIIKKAMINIAQWIETETQGEIIMIMQVHDELVFEVDEAKADSLQAKVCELMAA 896

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L V L     + +NW++
Sbjct: 897 AA----KLDVELLAEAGIGDNWEQ 916


>gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399]
          Length = 931

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 354/986 (35%), Positives = 531/986 (53%), Gaps = 69/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R    +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++ +WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDSMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAKQISF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V + L    L +K+++Q+HDELV EV E E+    + +   M
Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQIM 905

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K     ++  VPL   + V  NW+E
Sbjct: 906 AKVGGGLLD--VPLVAEVGVGENWEE 929


>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
 gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
          Length = 940

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 358/998 (35%), Positives = 552/998 (55%), Gaps = 92/998 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  G+  +AI GF N L  +L    K    +H AV
Sbjct: 3   LFLIDAYALIYRSYYAFIKNPRINSK--GMNTSAIFGFINSLEDVL----KRENPTHIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE +   +P ++   +A+ IP +E+  +EADD+I T
Sbjct: 57  GFDPKGPTFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179
               AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+   +++
Sbjct: 117 VAKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGDYEIMGVPEVLDKYGLTSVDQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEY 236
           + L  L GDS DNIPG PG+G KTA  LL E+G +EN+L N  ++K   QKK  EN+   
Sbjct: 177 IDLLGLMGDSSDNIPGCPGVGEKTAQKLLAEFGTIENLLENTDKLKGSLQKKVMENM--- 233

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC-- 294
            E  R S+ L  ++TDVPI       I E  N  RL+     LEF   INR++   +   
Sbjct: 234 -EQIRFSKFLATIKTDVPIRFDAAKCIREKMNEERLVEIYTELEFRTFINRMSGEPEKVK 292

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI-------NSEQTP 347
             +   P     +T +    A          I+ S F   + + + +       N + TP
Sbjct: 293 TESKTAPAPAKADTRKKAAPA--------GPIQGSLFEEFATEPTAVPKYSTLANLKSTP 344

Query: 348 QKLFL----ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
              +L    E+  +L ++          +N +D              +F   TD +D   
Sbjct: 345 HTYYLVDTEEKRIELGRF----------LNEQDF------------FAFDTETDGIDPLK 382

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           +  + ++ +    K++ ++ V        V  +++   K      IL++     +N   L
Sbjct: 383 AGLVGMSFAV---KENEAWYV-------PVPAAREEADK------ILAHFSPALQNPKSL 426

Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KE 519
           KIG NIK+D LV+ +YGI + G   D M+  Y+L+     H +  +A+ +L Y     +E
Sbjct: 427 KIGQNIKFDILVVRKYGIRIAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYKTVRIEE 485

Query: 520 ILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           ++  R +  + +  +   QV E+A E++++ L+L     P L  E L  ++  ++ P+I 
Sbjct: 486 LIGPRERKQLTMRDVPVVQVAEYAAEDADITLKLKNYFTPCLEKEGLESLFYDIEMPLIY 545

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME TG+ +D   LKQ S E++  L  LE+ IY+L+G KFN++S +Q+G++LF  LK
Sbjct: 546 VLAEMEYTGVTLDTVALKQSSEELTTALKKLEKEIYELAGMKFNINSARQVGEVLFDHLK 605

Query: 639 FPSGA-KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
               A KTKTG + T+ + LE++    +P++  +LE+R L K+ STY D+LP  IN  T 
Sbjct: 606 IEEKARKTKTGSYSTSEEILEKMRS-KHPVVGKLLEYRGLKKLLSTYIDALPELINPETG 664

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELR 756
           ++HT Y+ A T TGRL+S  PNLQNIP++ +LG++IR+AF +     +  SADYSQIELR
Sbjct: 665 KIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIELR 724

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH+++   + + F +  DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F 
Sbjct: 725 IMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFG 784

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA +L IPR+E+ + I+ YF  +P I  Y++++    ++ GYVETI+ R+    +INS  
Sbjct: 785 LAERLSIPRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFLPDINSHN 844

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           + +R   ER AINAPIQGSAADI + AM+ +    E   L +KM+LQ+HDEL F V ++E
Sbjct: 845 AIVRGYAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDE 904

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +    QI++  ME A    I L+VPL  +     NW E
Sbjct: 905 LEKVKQIVLDEMENA----IKLQVPLIADCGEGVNWLE 938


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 363/1011 (35%), Positives = 547/1011 (54%), Gaps = 104/1011 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   R     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNSQ-GEPTGAMFGVLNMLKSLISQVR----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++++  YK++RP +P+ L  Q+  +    ++ GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDKLFEQYKSHRPPMPDDLRRQIQPLHDIIRSLGIPLLSVEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  +G  V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   A
Sbjct: 122 AVQASSQGKKVLISTGDKDMAQLVDENIMLINTMSNTLLDRQGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  +  N  ++        KK  E +L    
Sbjct: 182 LMGDSSDNIPGVAGVGEKTALGLLQGIGSMSEVYANLDKVADLPIRGAKKLGEKLLAAKA 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  E LI+   N   L +     EF + ++ V +  +    N
Sbjct: 242 DADLSYVLATIKTDVKLDVIPEKLIIGTPNNDELAAQFGRYEFKRWLSEVLSGNNS-MVN 300

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
               V+ +N  +      +TE     ++K                               
Sbjct: 301 PPEQVVRVNRYQAAAAVPKTESAVKNSVK------------------------------- 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  +     +Q W++K++     +    TD++DA  ++ + I+    +   
Sbjct: 330 ----IDRTLYETVTTPAQLQSWIEKIQQANLIAVDTETDSLDAMTAELVGISFGLENG-- 383

Query: 419 DTSFKVETIFIDLS-VHTSQDS--------------TGKNT-------LTKE-ILSYLKK 455
                 E  +I L+ VH   ++              TGK +       L +E  L+ LK 
Sbjct: 384 ------EACYIPLAHVHEVAEAEEQAQADLFAEPKATGKTSWHRLPDQLNREDCLARLKP 437

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWL 513
             EN    KIG N+KYD  +   +GI ++G   D ML SYVL+S GR  H++  +A+++L
Sbjct: 438 VLENADIRKIGQNLKYDLTIFANHGIQVQGVAFDTMLESYVLNSTGR--HNMDDLAERYL 495

Query: 514 SY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLH 567
            +   + + +    K+ +  DKI  +Q  E+A E+++V ++L   L  +L  EK   L  
Sbjct: 496 GHQTISFETLAGKGKNQLTFDKIPLAQAAEYAAEDADVTMKLHQTLWAEL--EKTPTLTT 553

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P++ V+S++E  G+ ID   L++ S E  + L +LE   ++++GE FNL+SPK
Sbjct: 554 LFKDIELPLVSVLSRIERNGVLIDAQALRKQSQEFGERLTALEAKAHEIAGEAFNLASPK 613

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL +ILF KL  P   KT  G   T  + LE++   D+ + K ++E R L+K+KSTY D 
Sbjct: 614 QLQEILFNKLHLPVLQKTPKGDPSTKEEVLEEL-AFDHELPKLLVEHRGLAKLKSTYTDK 672

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  IN  T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AF++    ++I+
Sbjct: 673 LPQMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVARDGYRIIA 732

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELRI+AH++    L   F    DIHR  A+EIFG+ +E VS + RR AK INF 
Sbjct: 733 ADYSQIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQRRSAKAINFG 792

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           +IYG+S F L+ QL I R EA  Y+  YF R+P +  ++   +   +  G+VET+FGRR+
Sbjct: 793 LIYGMSAFGLSRQLAISRMEAKKYMDLYFQRYPNVQTFMHDIQEKAKAQGFVETLFGRRL 852

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK----MLLQ 923
           +  +I S  +S R   ER AINAP+QG+AADI +RAMI +     DH +A      M++Q
Sbjct: 853 YLPDIKSGNASRRKGAERVAINAPMQGTAADIIKRAMIDI-----DHVIAGDEDILMIMQ 907

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDELVFEV  E++   S++I   ME A      L VPL V   V  NW E
Sbjct: 908 VHDELVFEVRSEKVEFYSELIKQKMETAA----QLDVPLIVEAGVGANWDE 954


>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
 gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
          Length = 936

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 360/985 (36%), Positives = 549/985 (55%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRAF++ P L+    G    A+ G  NML  L+Q        SH  V
Sbjct: 6   ENPFVLVDGSSYLYRAFFSPPHLTNSA-GDATGAVYGVVNMLKSLMQQFS----PSHIVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++Y  YKANRP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYSQYKANRPSMPDDLRIQIEPLHAVIKAMGLPILIVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  A  +G    I + DKD+ QLV   T L +T+    +DI+ V +K+G+P E ++   
Sbjct: 121 LSKQASAKGIKTLISTGDKDMAQLVDEHTLLINTMTNSVLDIDGVTEKFGVPAELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  +LQ  G+++ I  N  ++        K   + + +  
Sbjct: 181 ALMGDTADNIPGVPGVGSKTALAMLQGIGSMDLIYENLDKLAPLGFRGSKTIAKKMADNE 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + ARLS KL  ++ DV + +  +       +   LI     LEF + ++ V         
Sbjct: 241 DMARLSYKLATIKLDVELEVAYDDFKTIKQDTDSLIKLFGKLEFRRWLSAV--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                 +D +  ++    +S++   S  ++E     L LE    
Sbjct: 292 ----------------------LDGEQILQGGASTSMTSTPSTSDTE-----LSLE---- 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           + + PI +D    I     ++Q +QKLE     S  I T   D   +K +  + + L   
Sbjct: 321 IKKTPIRHDQC--IYTQGQLKQLIQKLEKAELFSISIETTCADYMQAKIVGFSFA-LQVA 377

Query: 418 DDTS--FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           D+ S    +E  ++ L+ H   D+  +       L  LK   E     K+  N+K+ + V
Sbjct: 378 DENSAEITIEAFYLPLA-HDYIDAPAQLEYLA-TLDKLKPLLEKIAPQKVVFNLKFMRSV 435

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L   GI+++G   D ML SY+LDS    HD AS+  K+L     + + I    K  +P +
Sbjct: 436 LRLEGINLQGVAFDPMLESYLLDS-TGKHDKASLTLKYLQIEIASYEAIAGKGKKQLPFN 494

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           ++S   +  +  E+  + L+L LLL PKL    KL+ +YE ++ P+  V+S +E+ G++I
Sbjct: 495 QVSIKDITPYVGEHVELSLRLHLLLWPKLEKFPKLVALYEDIELPLAIVLSDVELGGVEI 554

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L   S EI K LL +E+  Y  +G++FNLSSPKQL  ILF  L+ P   KT  G  
Sbjct: 555 DATMLGAQSVEIGKRLLEIEKEAYIEAGKEFNLSSPKQLQSILFEDLELPILKKTPKGAP 614

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L ++      + K ++E R LSK+KSTY D LP  IN +T RVHT Y  A T+T
Sbjct: 615 STGEEVLVEL-AETYKLPKLVIEHRGLSKLKSTYTDKLPKMINAQTGRVHTSYHQAVTVT 673

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+++ G++IR+AFI+P   K+++ADYSQIELRI+AH+++   L + 
Sbjct: 674 GRLSSSDPNLQNIPIRSEQGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSQDKGLLEA 733

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH+  A+E+F V++++V+   RR AK INF +IYG+S F LA QL+I RS+A  
Sbjct: 734 FSTGLDIHKATASEVFSVSVDEVTTNQRRSAKAINFGLIYGMSAFGLAKQLKISRSDAKL 793

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ +YFHR+PG+  Y++ T++  R+ G+VETI GRR+    INS    ++  +ERAAINA
Sbjct: 794 YMDKYFHRYPGVLTYMQTTRDKAREQGFVETILGRRLQLPHINSRNGILKKASERAAINA 853

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI ++AM+ V   +E    +  ++L+Q+HDELVF + E+++   + II   M 
Sbjct: 854 PMQGTAADIIKKAMLDVAAWVEKQAPSQVQLLMQVHDELVFCIKEDQVENYTCIIQEIMA 913

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
           KA +    L VPL   + V NNW E
Sbjct: 914 KAVI----LDVPLLAEVGVGNNWDE 934


>gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491]
 gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491]
          Length = 938

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 357/993 (35%), Positives = 534/993 (53%), Gaps = 76/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D      I  L+                C  
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG-----IESLR----------------CTT 265

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 266 PKWAQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941
           NAP+QG+A+D+ +RAMI V + L        D  L +K+++Q+HDELV EV E E+    
Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 905

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +   M K  +    L VPL   + V  NW+E
Sbjct: 906 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 936


>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
 gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
          Length = 936

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 343/979 (35%), Positives = 546/979 (55%), Gaps = 72/979 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDGSS+++RA++   L +    DG P  AI G  NM   L    +K+    +   IF
Sbjct: 17  LILVDGSSYLFRAYHVPYLQALSTADGQPTGAITGVLNMFRSL----KKDYPNGNIIAIF 72

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRN+++P+YKANRP +P+ L  Q+  +     A G+P + I G EADD+I T  
Sbjct: 73  DAKGKTFRNDMFPEYKANRPPMPDDLRTQIAPIHEIITAMGLPLLVIPGVEADDVIGTLA 132

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A++ G    I + DKD+ QLV+    L +T+ + ++D+  V +K+G+ P++++   AL
Sbjct: 133 KQADELGIETVISTGDKDMAQLVTKHVRLINTMTDVEMDVAGVSEKFGVRPDQIIDYLAL 192

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD +DNIPG+   G KTA   L E+G ++ ++ NA ++K  K  EN+ +  E   LS +
Sbjct: 193 MGDKVDNIPGVVKCGPKTAVKWLAEHGTMQEVIANADKVK-GKIGENLRDALEQLPLSYQ 251

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L  ++ DV +      L   + +   L    +  E  +L+           A++     D
Sbjct: 252 LATIKCDVELEQTAGELAASEPDVDALAELYQKFELKRLL-----------ADLGKGGSD 300

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
           +  +    +A +T+ D          +S+ +Q  +I +      + +E+ Q         
Sbjct: 301 VGAS-TSSVAKKTKADST--------ASVGEQAVEIKA------VDVEKTQ--------- 336

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  I++ +  +QW++KL+   S +F   T+T    + K   + +S         F +E
Sbjct: 337 --YDIILDKELFEQWLKKLQACESFAFD--TETTSVHYMKAELVGVS---------FAIE 383

Query: 426 ---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ L+ H  +D+     L KE +L+ LK   E++   KIG N+KYD  VL  Y I
Sbjct: 384 VGKAAYVPLT-HDYEDA--PEQLDKEWVLAQLKPLLESKTIKKIGQNLKYDANVLSHYDI 440

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
           +++G E D M+ SY  +S  + H++ ++A K+L Y     +++       +  ++I   +
Sbjct: 441 ALQGIEFDTMIESYCYNSVATRHNMDALALKYLDYQTVHFEDVAGKGAKQLTFNQIDIEK 500

Query: 538 VQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E++++ L+L   + P L     +L V+  ++ P++ V+++ME TG+ ID D+L 
Sbjct: 501 AGHYAAEDADITLRLHHAIFPALAETASMLSVFNEIEMPLLPVLARMEQTGVLIDSDILA 560

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + S  + + L  LE   ++L+G+ FNL+SPKQL  ILF  LK P   KT  G   T  + 
Sbjct: 561 EQSFTLGQRLDELEIEAHNLAGKSFNLASPKQLQQILFEDLKIPVIKKTPKGAPSTAEEV 620

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L+++   D P+ K ILE R LSK+KSTY D LP  ++ +T R+HT Y  A T TGRL+S 
Sbjct: 621 LQELAL-DYPLPKVILENRGLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAVTATGRLSST 679

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+++ G+KIR+AFI+P   K+++ DYSQIELRI+AH++    L   F    D
Sbjct: 680 DPNLQNIPIRSEQGRKIRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKGLVTAFSEGKD 739

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAEIF V + +V+   RR AK INF +IYG+S F LA QL I R +A +Y  +YF
Sbjct: 740 IHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMSAFGLAKQLHIGRQQAQEYQDKYF 799

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  Y+E T+    + GYVET++GRR++  +IN+     +   ERAAINAP+QG+A
Sbjct: 800 QRYPGVLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNGMRKKAAERAAINAPMQGTA 859

Query: 897 ADITRRAMISVHK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           ADI ++AM++V    LE +    KM +Q+HDEL+FE+ ++ +   +  +V  M  A    
Sbjct: 860 ADIIKKAMLAVDSWLLEQNDDRIKMTMQVHDELIFEIHQDIVEETTAKLVTLMNDA---- 915

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L VPL     + +NW E
Sbjct: 916 VELSVPLIAEAGIGDNWDE 934


>gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 927

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 341/986 (34%), Positives = 540/986 (54%), Gaps = 78/986 (7%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYR++YA    P ++ K  GL  +A+ GFCN L ++L   R     SH 
Sbjct: 2   DKLFLIDAYALIYRSYYAFINNPRINSK--GLNTSAVMGFCNTLNEVLTKER----PSHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD+  +TFRNE +P YKA R + PE +   +P+++    A+ IP +++ GFEADD+I
Sbjct: 56  GVAFDH-GLTFRNEAFPQYKAQREETPEDIKRSVPIIKDILTAYHIPVLQVDGFEADDVI 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PE 177
            T    A ++G    +++ DKD  QLV     +Y        E +  + V +K+ I  P 
Sbjct: 115 GTLALKAGQQGVDTYMLTPDKDYAQLVRSNVYMYRPRHGGGYETMGPDEVNQKYNISSPL 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GDS DN PG PG+G KTA+ L+ E+G +E +L N +++K  K RE +    
Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTASKLINEFGTVEQLLENTAQLK-GKMREKVEAAV 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++S+ L  +RTDVP+ + LE L L++ +  +L      LEF     R+         
Sbjct: 234 EDIKMSKFLATIRTDVPVELDLEQLQLKEPDAAKLQEIFTELEFKSFATRL--------- 284

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT---PQKLFLER 354
                   +N  E           +   ++  Q S L D+ +   ++ +   PQ      
Sbjct: 285 --------LNKAE-----------KPKKVENRQLS-LFDEPAMAEADNSLFEPQSAASAN 324

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            Q +   P     Y  +    D+Q  V  L T    S    T + +A  ++ + ++ +  
Sbjct: 325 RQTIETTP---HEYHLVQTEADMQALVTLLSTADVISLDTETTSTNAIEAQLVGLSFAIE 381

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           ++K          ++ +     +         + I++  K  +EN   LK+G NIKYD  
Sbjct: 382 EKK--------AYYVPVPEQADE--------AQNIVNRFKAIYENPKTLKVGQNIKYDLE 425

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIP 529
           VL  YGI+++G   D M+  Y+L      H++  +A+ +L+Y    I        K+   
Sbjct: 426 VLRNYGIALQGPLFDTMVAHYLLQP-ELRHNMDFMAEVYLNYETVHIDALIGPKGKAQKN 484

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           + +++ S+V  +A E++++ LQL  +L+PKL+   +  ++  ++ P+I V+++ME  G++
Sbjct: 485 MRELAPSEVYNYACEDADITLQLKNVLQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVR 544

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           ID   LK+ S   ++ +L LE+ IY  +G+ FN++SPKQ+GDILF ++K      KTKTG
Sbjct: 545 IDTAALKETSQVFTERMLQLEQEIYQAAGKTFNVASPKQVGDILFGEMKIIDKPKKTKTG 604

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + L+ +    +PI+ +IL++R L K+  TY D+LP  IN RT  +HT ++ A T
Sbjct: 605 QYVTSEEVLQTLRS-KHPIVAHILDYRALKKLLGTYVDALPKLINPRTGHIHTSFNQAVT 663

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+ FI     +  SADYSQIELR++AH+++   + 
Sbjct: 664 ATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANML 723

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH   AA+I+   + +V+   R  AK  NF IIYGI+ F LA +L I R+EA
Sbjct: 724 DAFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGIIYGITVFGLADRLNIERAEA 783

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
              I  YF  FP + +Y+E+ K   R NGYVET F RR +  +INS  +++R I ER AI
Sbjct: 784 KQLIDGYFKMFPQVQQYMEQAKETARANGYVETFFHRRRYLPDINSGNATVRAIAERNAI 843

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AM+ + +  +   + +KM+LQ+HDEL F V   E     +I++  M
Sbjct: 844 NAPIQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNFSVLPTEKEQVERIVMEEM 903

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           + A L    L VPL  +    NNW E
Sbjct: 904 QAAYL----LDVPLVADSGWGNNWLE 925


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 351/982 (35%), Positives = 536/982 (54%), Gaps = 70/982 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA +A    P ++ K  GL    I GF N L ++++  +     +H  V
Sbjct: 6   LFLLDAYALIYRAHFAFAKNPRITSK--GLNTGPIFGFTNTLLEVIKKEK----PTHLVV 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+  + DYKANR + PE +   +P ++   QA  IP +E  G+EADD+I T
Sbjct: 60  CFDTKTPTFRHTEFVDYKANREEQPEDITLAVPYIKRLIQAMNIPCLEKDGYEADDVIGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIPP-EK 178
               A K+ F V + + DKD  QLV     LY         E + +  V+ +WGI   ++
Sbjct: 120 LAKKASKDEFEVFMYTPDKDYGQLVDEHIFLYKPAFLGNGVEVMGVPEVLDRWGIKRIDQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +V +  L GD +DNIPGIPG+G KTA  LL++Y  LE IL NA +I   K  E +    E
Sbjct: 180 VVDVLGLMGDKVDNIPGIPGVGEKTAVKLLEQYDTLEGILENADKI-SGKLGEKVRAGKE 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +A +S+ L  + T+VPI    E  +L +  GP L      LEF  L +R+          
Sbjct: 239 SALMSKWLAKIDTEVPIEFEEERFLLNEEYGPELAELFDELEFRTLKSRI---------- 288

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                     T   G   ETE  +    +++Q +   D    +     PQ   L   + +
Sbjct: 289 -------FKPTTETGTPNETEKPKPKAPESNQMNLFGD----LEEVSEPQDTTLHTAKDV 337

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I   ++  + ++ L       F   T  +DA  ++ + ++ +   +  
Sbjct: 338 LH------DYYLISTPEERAELLEYLLAQEEICFDTETTDIDALDAQIVGLSFAYRPR-- 389

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 E  +I  S    +         K +L   K  FENE+  K+  NIKYD  +L  
Sbjct: 390 ------EAFYIPFSPKFEE--------AKAVLIEFKPLFENENIRKVAQNIKYDLTILAT 435

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           YG+ ++G   D ML  Y+L+  +  H +  +A+ +LSY      +++   K  + +  + 
Sbjct: 436 YGVEVKGEIYDTMLAHYILEPDQR-HGMDYLAETYLSYKPIPISDLIGKGKKQLNMRDVP 494

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q++E+A E++++ LQL  +L  ++       + + ++ P++ V+S ME TG++ID + 
Sbjct: 495 LEQIKEYAAEDADITLQLKHVLDAQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDVEA 554

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTT 653
           L  +S  + K+L   +E+I+ L+G +FN+ SPKQLG+ILF  +K     K T TGQ+  T
Sbjct: 555 LHDLSNTLQKDLAKTQEDIFQLAGMEFNVGSPKQLGEILFEHMKIDEKPKKTPTGQY-AT 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +D+      D+ I++ IL++R+LSK+KSTY D+LP  I+KRT R+HT Y+ A   TGRL
Sbjct: 614 GEDILVNYEADHEIVRKILDFRELSKLKSTYVDALPTLISKRTGRIHTTYNQAVAATGRL 673

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIPI+T+ G++IR+AFI    +  ++SADYSQIELRI+A  +    + + F+
Sbjct: 674 SSTNPNLQNIPIRTERGREIRKAFIPGGEEFTILSADYSQIELRIMADFSGDESMLEAFD 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N +DIH   A+++FGV++E+V+  MRR AK +NF IIYGIS F LA +L IPR EA + I
Sbjct: 734 NGMDIHAATASKVFGVSLEEVNSDMRRKAKMVNFGIIYGISAFGLAQRLGIPRGEAKNII 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF +FP +  Y+++T    R+  YVETI GRR +  +INS   + R   ER AINAPI
Sbjct: 794 DAYFTQFPKVKSYMDQTIEKARELEYVETILGRRRYLRDINSRNQTNRGFAERNAINAPI 853

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ + AMI +H  ++   L +KM+LQ+HDELVF+    E+    + I + M  A 
Sbjct: 854 QGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDELVFDAHHSEVEFLKEKIDYYMVNA- 912

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
           LP   L+V ++  I +  NW E
Sbjct: 913 LP---LKVKIETGIGIGKNWLE 931


>gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594]
          Length = 938

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 357/993 (35%), Positives = 536/993 (53%), Gaps = 76/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R A  +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTAPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941
           NAP+QG+A+D+ +RAMI V + L        D  L +K+++Q+HDELV EV E E+    
Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 905

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +   M K  +    L VPL   + V  NW+E
Sbjct: 906 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 936


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 897

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 356/976 (36%), Positives = 539/976 (55%), Gaps = 92/976 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T   
Sbjct: 59  AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   AL 
Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS +L
Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             ++ D+ +      L +ED                           C AA+   ++   
Sbjct: 238 ATIKCDLEL-----DLTVEDLK-------------------------CKAADKAYLIEAY 267

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              E K + ++   + D  I TSQ      Q + +  E                      
Sbjct: 268 TRYEFKSL-LKDLYNSDIKIVTSQA-----QAADVAIE---------------------- 299

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +   + +LE   S +F   TD+++ + +  + ++      K+  +F +  
Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
               L V   Q   G       +L  LK  F +   +K+ HN K+D+ VL +Y I + G 
Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540
            +D M+M+YVL S    HD+ S++++ L     +YT   I  + K    +D++    V +
Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K+L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L +VF  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+VN+    +W +
Sbjct: 880 NVPLEVNVDSGKSWDQ 895


>gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 939

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 358/1003 (35%), Positives = 542/1003 (54%), Gaps = 95/1003 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56
           M     L LVDGSS++YRA++A   + R++    DG P  A+ G  NML +L    R E 
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHA---MLRQNLTAPDGAPTGALYGVLNMLRRL----RSEY 53

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEI 112
              + AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I
Sbjct: 54  PHDYCAVVFDAKGKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLT----GWPVLVI 109

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
              EADD+I T        G  V + + DKD+ QLV+    L +T+  E +DIE V +K+
Sbjct: 110 GQVEADDVIGTLAKQGVGHGLQVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKF 169

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P+++    ALTGD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN
Sbjct: 170 GVRPDQIRDYLALTGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIK-GKVGEN 228

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLIN 286
           +        LS  LV ++TDV +     H  L D         P+      A++F +   
Sbjct: 229 LRAALPRLPLSYDLVTIKTDVDL-----HAELSDGLESLRRTTPKWAQL--AVDFKRWGF 281

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           R   T+  +A +       ++   + G++            +      +   +++ SE+ 
Sbjct: 282 R---TWLKEAES------RMHEAADGGLS-----------GSDAIGGKAAPAAEMPSERL 321

Query: 347 PQKLFL-ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           P+K    E+L            Y  +         + KL           T ++DA ++ 
Sbjct: 322 PEKAVAPEKL-----------DYQAVTTEAQFAALLDKLSQAEKIGIDTETTSLDAMNAS 370

Query: 406 PIAIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
            + I+I+         F+  E ++I   V  S  +  +    + +L  LK   EN    K
Sbjct: 371 LVGISIA---------FQAGEAVYI--PVGHSLTAAPEQLDLQYVLDRLKPHLENPALKK 419

Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEI 520
           IG N+KYD+ V   YGI++ G   D ML SY+++S    H +  ++ +WL     T + +
Sbjct: 420 IGQNLKYDQHVFANYGIALNGIVGDAMLASYIIES-HLGHGLDELSGRWLGLETITYESL 478

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
                  I    ++     E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+
Sbjct: 479 CGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVL 537

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
            +ME  G+QID+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P
Sbjct: 538 FEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIP 597

Query: 641 SGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
           +    KT  G   T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R +R
Sbjct: 598 TKGLKKTAKGGISTNEDVLEQL-APDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKR 656

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y+ A  +TGRLA   PNLQNIPI+T+ G+K+RRAF +PP   ++SADYSQIELRI+
Sbjct: 657 VHTTYAQAVAITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIM 716

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L   F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA
Sbjct: 717 AHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLA 776

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L I    A ++I RYF R+PG+ EY+++ +      GYVET+FGRR++  +I    ++
Sbjct: 777 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNAN 836

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFE 931
           IR   ERAAINAP+QG+A+D+ +RAMI V + L        D  L +K+++Q+HDELV E
Sbjct: 837 IRARAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQVHDELVLE 896

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           VPE E+    + +   M  A +    L VPL   +    NW+E
Sbjct: 897 VPEAELDLVKEKLPQMM--AAVDDGMLDVPLVAEVGAGMNWEE 937


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 340/995 (34%), Positives = 551/995 (55%), Gaps = 73/995 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M ++  LFL+D  + I+R +YA    P ++ K  G+  +AI GF N L  +++  + +  
Sbjct: 1   MAEQKRLFLLDAYALIFRGYYALIKNPRINSK--GMDTSAIMGFMNSLLDVIRREKPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E++P+YKANR   P+ +   +P ++   +A  IP + ++G+EA
Sbjct: 57  --HLAVCFDKGGSAERTELFPEYKANRDATPDAIRIAVPYIQDILKAMHIPVVVLEGWEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DDII T    AEKE + V +++ DKD  QLVS    +Y   +     + + I+ WGIP  
Sbjct: 115 DDIIGTLAKQAEKEDYKVFMVTPDKDFGQLVSENIFMYKPAR-----MGNGIEIWGIPEI 169

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   PE+++    + GD+ DNIPG+PG+G KTA   ++E+G++EN+L N  ++K  
Sbjct: 170 QKRFGVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIEEFGSMENLLANTDKLK-G 228

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +E + + A    LS+KL  +  D  +T       L   +  ++    + LEF +L ++
Sbjct: 229 KMKEKVRDNAALGLLSKKLATICIDCDVTFNANDYELTMPDAEKVQVLFEELEFRRLKDQ 288

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
               +  +           + T+ K  A E  + +  ++     S+ S+     +S +T 
Sbjct: 289 FLKLFSTEDDTT--ATDTSSNTKTKPQAKEAGVGQ-FSLFGGDPSTASETVMDFSSRKT- 344

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                  ++ +S        Y  +     ++ ++Q L    S  F   T  ++   ++ +
Sbjct: 345 -------IKDISHV------YQSVAPGMAMKLFLQNLLKQTSVCFDTETTGLNPLTAELV 391

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            IA S    K          +I      ++         +EI+  L+ FFE+E   KIG 
Sbjct: 392 GIAFSWEASK--------GFYIPFPADKTE--------AQEIIEQLRPFFEDEAIEKIGQ 435

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----K 522
           N+KYD  VL +Y + ++G   D ML  Y+++     H++  +A+ +L+YT   I     K
Sbjct: 436 NLKYDIKVLDKYNVKVKGKCFDTMLAHYLINPDMR-HNMEVLAETYLNYTPVSITELIGK 494

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K+ + +  +      E+A E++++  QL    +P+L   K   ++  ++ P++ V++ 
Sbjct: 495 KGKNQLNMRDVPLPNQTEYAAEDADITYQLAQQFKPELEEAKTQELFTDIEIPLLHVLAD 554

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641
           ME+ GI +D   L  ++ ++  ++  LE +IY+ +GE+FN++SPKQLGDILF KL     
Sbjct: 555 MELEGINLDTKFLNSLAEDLDNDIKKLEADIYEEAGEEFNIASPKQLGDILFDKLALVKK 614

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTGQ+ +TA+D+      D+ II+N+L +R L+K+KSTY D+LP  + + T RVHT
Sbjct: 615 PKKTKTGQY-STAEDVLSYLAKDHKIIENVLSYRGLAKLKSTYVDALPAQVEESTGRVHT 673

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759
            Y      TGRL+S  PNLQNIPI+T+ G+++R+AF+ P  K+  L++ADYSQIELRI+A
Sbjct: 674 DYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFV-PRNKEYVLVAADYSQIELRIIA 732

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            +++ T + + F+N  DIH   A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ 
Sbjct: 733 ALSEETTMIEAFKNGEDIHASTASKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSN 792

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           Q  + R+EA + I  Y+  +P +  Y+    +F R NGYV+T+ GRR +  +IN   + +
Sbjct: 793 QTDLSRAEAKELIDTYYKTYPKLKSYMGGLVDFARDNGYVQTVLGRRRYLKDINGSNAIV 852

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER A+NAPIQGSAADI + AMI++HK LE+ K  TKMLLQ+HDELVF+V + E+  
Sbjct: 853 RGAAERNAVNAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVFDVYKPELEE 912

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +I   ME A      L VPL V + V  NW E
Sbjct: 913 MKTLIKSEMENA----YKLEVPLDVEVGVGENWLE 943


>gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2]
 gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2]
          Length = 931

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 342/982 (34%), Positives = 535/982 (54%), Gaps = 61/982 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A P L R   G P +   G    +  ++Q  RK+  A +
Sbjct: 1   MSNSKTLVLVDGSSYLYRAYHAMPDL-RAIPGDPASPATGAIRGMVNMMQALRKDVQADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
              +FD    TFR+E+Y +YKA R  +P+ L  Q+  +    Q  G   + + G EADD+
Sbjct: 60  AVCVFDASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVQLLGWKVVAVPGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT    A  +G  V + S DKDL QLV     + DT+  +K D+  V  ++G+PP  M+
Sbjct: 120 IATLAQTAAAQGIQVIVSSGDKDLSQLVGEHVTIIDTMNGKKRDVAGVTAEFGVPPALMI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GD++DN+PG+  +G KTAA  L+E+G+L+N++  A+ IK     +N+ +   + 
Sbjct: 180 DYQALVGDTVDNVPGVTKVGPKTAAKWLEEHGSLDNLIARAADIKGVAG-QNLRDAIASG 238

Query: 241 RL--SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +L  SR+LV ++TD              C+    IS L  L+   L        + D+A 
Sbjct: 239 QLALSRQLVTMKTD--------------CDLSSYISGLPQLDAITLA-------EPDSAA 277

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           + P        E  G             +     + S Q    +++           Q+ 
Sbjct: 278 LAPFY------EKYGFKGLVRTLGAAAAEAKAAKTDSAQGGLFDADDAAATEVAVTAQQ- 330

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                 +  YT I+N   + +W+ K+      +    TD++D   ++ + I+ S      
Sbjct: 331 -----RDVLYTTILNEAQLDEWLAKISAAELTALDTETDSLDEMVARIVGISFSVA---- 381

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 E  +I L  H   D   +  +   +L+ LK + E+    K+G ++KYD+ V   
Sbjct: 382 ----VGEAAYIPLR-HEGMDVPEQLNMDM-VLARLKPWLEDAGKKKLGQHVKYDQHVFAN 435

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           +GI++RG+  D ML SYVL++ R  H++ S+A + +S +    +++    K+ IP  ++S
Sbjct: 436 HGITVRGYAHDTMLQSYVLEADRP-HNLTSLALRHVSRSGISYEDLCGKGKNQIPFAQVS 494

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +   ++ E+S+  L +   L P++     LLH+YE L+    + + ++E  G+ ID  
Sbjct: 495 VDKAAAYSCEDSDQTLDVHNTLWPRIQAHAGLLHIYE-LEMQTSEALFRIERNGVSIDAG 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S ++   +L LEE  Y+++G+ FNLSSPKQLG+I F KL  P   KT TG   T 
Sbjct: 554 ELARQSNDLGARILKLEEEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTD 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++   D P+   +LE R LSK+K TY D L         RVHT Y+ A  +TGRL
Sbjct: 614 EEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVTGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++T  G+++R AF++P  K + SADYSQIELRI+AH++    L   F+N
Sbjct: 673 SSNDPNLQNIPVRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKN 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LD+HR  AAE+FGV++++VS + RR+AK INF +IYG+S F LA  L I    AA YI 
Sbjct: 733 GLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYID 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF R+PG+  Y+++T       GYVET+FGRR+   EIN      +   ERAAINAP+Q
Sbjct: 793 KYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAAINAPMQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ ++AM++V   L+  K    +++Q+HDELVFE+PE     A++  V +   + +
Sbjct: 853 GTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPE-----AARDWVQAEIPSIM 907

Query: 954 PKI-NLRVPLKVNIKVSNNWQE 974
             + +L VPL   I   ++W++
Sbjct: 908 AGVADLSVPLLAEIGFGSSWEK 929


>gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196]
          Length = 938

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 358/993 (36%), Positives = 533/993 (53%), Gaps = 76/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R    +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++ +WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDSMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAKQIGF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T+ G+K+RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941
           NAP+QG+A+D+ +RAMI V + L        D  L +K+++Q+HDELV EV E E+    
Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 905

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +   M K  +    L VPL   + V  NW+E
Sbjct: 906 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 936


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 358/1002 (35%), Positives = 556/1002 (55%), Gaps = 80/1002 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L    K+  
Sbjct: 1   MNSTDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A K+G    +++ DKD  QLVS    +Y    +   E + IE +  K+ I
Sbjct: 115 DDVIGTLATEAGKQGITTYMMTPDKDYGQLVSDNVFMYRPKHSGGFEVMGIEEIKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
              E+++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSTEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVAEFGSIENLLAHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++ DVPI + +  L+ E+ N   L    + LEF  LINRV    D
Sbjct: 234 EANREMITFSKFLATIKVDVPIKLDMNTLVREEPNEEELRKIFEELEFRTLINRVLKKTD 293

Query: 294 C------DAANIEPVVLDI-------NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
                  ++A  +P    +        T EN G            ++   F++ +     
Sbjct: 294 APLPSSSNSAAPDPYAGTLFAQPTGSATPENNG-----------PVQGDLFANFAG---- 338

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI-QQWVQKLETIGSASFKIITDTM 399
            +     +K  L RL+ L       D   ++++T++  ++ +QKL T    S    T   
Sbjct: 339 -DGTDGAKKSNLTRLEML-------DVDYQLIDTEEKRKEIIQKLLTTEILSIDTETTGT 390

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           +   ++ + ++ S  + +   ++ V        V  ++D   K      I++ L+  +EN
Sbjct: 391 EPMEAELVGMSFSDAENR---AYYV-------PVPANRDEALK------IVNELRPLYEN 434

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR- 517
           E+ +K+G NIKYD +VL  YG+ ++G   D ML  YVL      H++  +A+ +L Y   
Sbjct: 435 ENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLQYQTI 493

Query: 518 --KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              E++ +R K+   +  +    V  +A E+++V L+L  +L  +L  +   H++  ++ 
Sbjct: 494 HIDELIGARGKNQKNMRDLPAEDVYRYACEDADVTLKLKNVLEKELKEQSAEHLFYEIEM 553

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDIL 633
           P++ V+  +E  G++ID + L+Q S   +  L  +E+ IY L+G E FN++SPKQ+G++L
Sbjct: 554 PLVPVLVNIESNGVRIDTEALRQSSEHFTLRLQEIEKEIYALAGGETFNIASPKQVGEVL 613

Query: 634 FTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           F +LK    AK TKTGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  I
Sbjct: 614 FDRLKIVDKAKKTKTGQYVTSEEVLESLRS-KHAIIGKILEYRGLKKLLSTYIDALPQLI 672

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N RT R+HT ++ A T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQ
Sbjct: 673 NPRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQ 732

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH+++   +   F +  DIH   AA+I+ V+I  V+  MRR AKT NF IIYGI
Sbjct: 733 IELRIMAHLSQDKNMIDAFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGI 792

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA ++ +PR EA + I  YF  +P + EY++++    R+NGYVETIF R+    +I
Sbjct: 793 SVFGLAERMNVPRQEAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRKRFLPDI 852

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           NS  + +R   ER AINAPIQGSAADI + AM  + + L+ + L  KM+LQ+HDEL F V
Sbjct: 853 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHDELNFSV 912

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           PE E     +I++  ME+A      + VPLK +     NW E
Sbjct: 913 PEAEKEIIQKIVIEEMERA----YRMLVPLKADCGWGKNWLE 950


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 345/999 (34%), Positives = 542/999 (54%), Gaps = 78/999 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFLVD  + I+R +YA    P ++ K  G   +AI GF N L  +++  R +  
Sbjct: 1   MSNQKRLFLVDAYALIFRGYYAFIKNPRINSK--GEDTSAIMGFMNSLLDVIKRERPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E+Y +YKANR + PE +   +P +    +A  IP +  +G+EA
Sbjct: 57  --HLAVCFDKGGSVDRVEMYQEYKANRDETPEGIKTAVPYIYEILKAMHIPIMVKKGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DD+I T    AEKEG+   +++ DKD  QLVS    +Y  V           + WGIP  
Sbjct: 115 DDVIGTLAKKAEKEGYKTFMVTPDKDFAQLVSENIFMYRPV------FGGGYETWGIPEV 168

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   P +++    + GD+ DNIPG+PG+G KTA   L  YG++E +L N   +K  
Sbjct: 169 QQKFEVTDPLQVIDYLGMMGDASDNIPGLPGVGPKTAKKFLAAYGSMEGLLANTHELK-G 227

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +E +    E   LS+KL  +  DVP+    +   L+  +  ++    + LEF +L + 
Sbjct: 228 KMKEKVEANGELGLLSKKLATIMLDVPVEFDAKDFELDHPDIEKVKQIFQDLEFRRLTDN 287

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
              T+  +           N    K +A +       +    QFS      +   SE T 
Sbjct: 288 FLKTFSAE------TTAPTNEIPEKKVAPKVTTKEQKSAGAGQFSLFGGDDTSNTSEAT- 340

Query: 348 QKLFLERLQKLSQYPINNDS-----YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
                      S+Y  N        Y  +      + +V+ L    S  F   T  ++  
Sbjct: 341 -----------SEYTRNTAETSSHFYQSVAPGMATKLFVKNLMNQTSVCFDTETTGLNPL 389

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
            ++ + IA S    K               V   +D   KN   +E++  L+ FFEN++ 
Sbjct: 390 TAELVGIAFSWETGKG------------FYVPFPED---KNE-AQELIEVLRPFFENDNI 433

Query: 463 LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----R 517
            KIG N+KYD  VL +Y + ++G   D ML  Y+++     H++  +A+ +L+YT     
Sbjct: 434 EKIGQNLKYDIKVLAKYNVEVKGKLFDTMLAHYLINPDMR-HNMDVLAETYLNYTPISIT 492

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           + I K  K+ + + ++   +  E+A+E++++ LQL      +L       ++  ++ P++
Sbjct: 493 ELIGKKGKNQLSMREVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFNDIELPLL 552

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V++ ME+ GI +D+D L  +S E++ ++ +LE++IY+ +GE+FN++SPKQLG ILF K+
Sbjct: 553 RVLAAMELEGINLDKDFLNSLSEELNTDIANLEKSIYEAAGEEFNIASPKQLGVILFEKM 612

Query: 638 KF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           K      KTKTGQ+ +TA+D+      D+ II+ +L++R LSK+KSTY D+LP  +++ T
Sbjct: 613 KLVDKPKKTKTGQY-STAEDVLSYLAKDHKIIQQVLDFRGLSKLKSTYVDALPLQVDEST 671

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIEL 755
            RVHT Y      TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIEL
Sbjct: 672 GRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENHILLAADYSQIEL 731

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+A ++K   + + F+N  DIH   A+++F V I +V+ + R +AKT+NF IIYG+S F
Sbjct: 732 RIIAALSKEETMIEAFKNGEDIHASTASKVFNVPITEVTREQRSNAKTVNFGIIYGVSAF 791

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+ Q  + RSEA + I+ Y+  +P +  Y+ +  +F R NGYV+T+ GRR +  +INS 
Sbjct: 792 GLSNQTDLSRSEAKELIETYYATYPKLRAYMSEQVDFARDNGYVQTVLGRRRYLKDINSR 851

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            + +R   ER A+NAPIQGSAADI + AMI+++K L+     TKMLLQ+HDELVF+V + 
Sbjct: 852 NAVVRGAAERNAVNAPIQGSAADIIKIAMINIYKKLQTGAYKTKMLLQVHDELVFDVYKP 911

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+     +I   ME A      L VPL V++ +  NW E
Sbjct: 912 ELEGLKNLIKTEMENAY----ELSVPLDVDLDIGANWLE 946


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 343/995 (34%), Positives = 540/995 (54%), Gaps = 73/995 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFLVD  + I+R +YA    P ++ K  GL  +AI GF N L  +++  R +  
Sbjct: 1   MADQKRLFLVDAYALIFRGYYAFIKNPRINSK--GLDTSAIMGFMNSLLDVIKRERPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD    T R E++ +YKANR   PE +   +P +    +A  IP +  +GFEA
Sbjct: 57  --HLAVCFDKGGSTDRVEMFQEYKANRDATPEPITQAIPYICNILEAMHIPIMVKEGFEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DD+I T +  AEKEGF   +++ DKD  QLVS    +Y        DI      WG+P  
Sbjct: 115 DDVIGTLSKQAEKEGFKTFMVTPDKDFAQLVSENIFMYKPRFGGGYDI------WGVPEV 168

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   P +++    + GDS DNIPG+PG+G KTA   L ++G++E +L N  ++K  
Sbjct: 169 LEKFQVTDPLQVIDFLGMMGDSADNIPGLPGVGEKTAKKFLAQFGSMEGLLANTDQLK-G 227

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +E +    E   LS+KL  +  DVP++   +   L+  +  ++      LEF  L+  
Sbjct: 228 KMKEKVEANGELGLLSKKLATIMLDVPVSFNAKDFTLDQPDVEKVKEIFNELEFRNLLTN 287

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
              T+  +           + +  K +A   E          QF   +   S   +++  
Sbjct: 288 FLKTFATETTTKTAETDTKSESNTKKLATNAE---------GQFDLFAAPGSGSITQE-- 336

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                E L         N  Y  I +T   +  ++KL    S  F   T  + A   + I
Sbjct: 337 -----ESLSGFKNINNTNHFYQHIDSTLSRKLLIKKLLQQPSVCFDTETTGLKALEVELI 391

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            IA S         +++   +  +S   +Q+ T      K IL   + FFE+E   K+GH
Sbjct: 392 GIAFS---------YEIGKGYY-VSFPENQEET------KAILEEFRPFFESEMIEKVGH 435

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILK 522
           N+KYD  VL  Y + ++G   D M+  Y+++     H++  +A+ +L+Y      + I K
Sbjct: 436 NLKYDIKVLSNYNMPVKGKLFDTMIAHYLINPDMR-HNMDVLAETYLNYHPVSITELIGK 494

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K+ + +  +      E+A+E++++  QL      +L    +  ++ +++ P++ V++ 
Sbjct: 495 KGKNQLSMRVVPIKDQTEYAVEDADITYQLKQHFTKELDSGNVTELFNKVELPLVSVLTA 554

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641
           MEI GI +D + LKQ+S  ++ ++  LE+ IY+ +GE+FN++SPKQLG +LF  +K    
Sbjct: 555 MEIEGINVDTNFLKQLSTALTDDINRLEKEIYEQAGEEFNIASPKQLGIVLFENMKLVDK 614

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTGQ+KT  +D+      ++ II++I E+RQ  K++STY D+LPN INK+T R+HT
Sbjct: 615 PKKTKTGQYKT-GEDILSFLAKEHKIIRDIQEYRQYKKLQSTYVDALPNEINKKTGRIHT 673

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759
            Y  A   TGRL+S  PNLQNIPI+T+ G+++R+AF+ P  +   L++ADYSQIELRI+A
Sbjct: 674 QYMQAVAATGRLSSNNPNLQNIPIRTERGREVRKAFV-PKDENYVLLAADYSQIELRIIA 732

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            +++   +   F+N  DIH   AA++FGV+I  V+ + R +AKT+NF I+YG+S F L+ 
Sbjct: 733 ALSEEETMINAFKNGEDIHASTAAKVFGVDINDVTREQRSNAKTVNFGIVYGVSAFGLSN 792

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           Q  + R EA + I  Y+  +P +  Y+    +F R++GYVET+  RR +  +INS  + +
Sbjct: 793 QTDLSRGEAKELIDTYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNAMV 852

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER A+NAPIQGSAADI + AMI++H         +KMLLQ+HDELVF+  ++E+ T
Sbjct: 853 RSGAERNAVNAPIQGSAADIIKLAMINIHNRFIQEGFKSKMLLQVHDELVFDAHKDELET 912

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              II + ME A      + VPL V + +  NW E
Sbjct: 913 IKPIIKNEMENA----FKMTVPLDVEMGIGQNWLE 943


>gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902]
          Length = 930

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 356/986 (36%), Positives = 533/986 (54%), Gaps = 70/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIK-GKVGENLRAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R A  +    
Sbjct: 232 LPRLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTAPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E   +K    + 
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDVFGSDSIGEQAALNAEMPSEK----QA 321

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 322 EKATA-PERLD-YQAVTTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK    N    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  + + FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 846 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928


>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 879

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 335/922 (36%), Positives = 520/922 (56%), Gaps = 57/922 (6%)

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AVIFD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EAD
Sbjct: 7   THMAVIFDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEAD 66

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           DII T    A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +
Sbjct: 67  DIIGTLAKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQ 126

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++    L GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +
Sbjct: 127 IIDYLTLMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLD 185

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             +L  +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++
Sbjct: 186 NIKLDHQLASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSS 245

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +         +     ++ E+    TI+T   +SL+ Q  ++ +      L  E   +L
Sbjct: 246 YK--------QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQL 297

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            Q   N D +   ++T+      +  E +G   F I  D  DA++  P+A          
Sbjct: 298 WQRMQNADHFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYI-PLA---------- 341

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                          H  +++  +  L +E +L+ +K   ENE   KIGH++KYD  +  
Sbjct: 342 ---------------HNYENAPQQ--LNREQVLAQIKPVLENEAVKKIGHHLKYDAHIFA 384

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            +GI ++G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I
Sbjct: 385 NHGIELKGWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI 444

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D 
Sbjct: 445 EIEVAAHYAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDH 504

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L ++S E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T
Sbjct: 505 AFLDKLSVEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYST 564

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   LE+I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGR
Sbjct: 565 SESVLEKI---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGR 621

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F+
Sbjct: 622 LSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQ 681

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D+HR  AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YI
Sbjct: 682 HGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYI 741

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           K+YF R+PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+
Sbjct: 742 KQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPL 801

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI V K L   K   K+LLQ+HDELVFEV        S+ I   M+   
Sbjct: 802 QGSAADIIKLAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV- 858

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + + VPL V +    NW +
Sbjct: 859 ---LEISVPLVVEVGQGKNWDD 877


>gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
 gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
          Length = 891

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 358/940 (38%), Positives = 534/940 (56%), Gaps = 73/940 (7%)

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           K+    + A + D    TFR++IYPDYKANRP +PE L  Q+PL+    Q  GIP ++I 
Sbjct: 2   KDVPTDYVACVVDPKGKTFRSDIYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIP 61

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKK 171
           G EADD I T T  A  EGF V I + DKD  QLV+    L +T+ ++   ++ E V KK
Sbjct: 62  GIEADDTIGTLTKKAVAEGFNVVIATGDKDFAQLVNDNVLLVNTMGKDNSWLNSEGVEKK 121

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +G+PPEK++   AL GD IDN+PG+P  G KTAA  + E+G+++ ++ NA ++K K   E
Sbjct: 122 FGVPPEKIIDFLALMGDKIDNVPGVPKCGEKTAAKWITEFGSVDGVIENAEKVKGK-IGE 180

Query: 232 NILEYAETARLSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRV 288
           N+        ++R+LV ++TD  ++  +P LE L L+  N   L+ +   LEF      +
Sbjct: 181 NLRSALGFLPIARQLVTIKTDADLSAEVPSLESLKLKTPNRTELLDYYNKLEFRSWAKEL 240

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTP 347
             T D     ++P  L+ +TT  K  A+    ++ DT         L  Q  +  +E+T 
Sbjct: 241 KKT-DV-PGEVKP--LETSTTAQKRAAVGAAPVEGDTL-------DLFSQEQESETERTL 289

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           + +                  T     K++   ++ L T     F ++ D        P+
Sbjct: 290 EII------------------TDKAKAKELAAHLEDLVTKDGFEFYVLADGSSQQEYMPV 331

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            +A  T D K  TS+    + ID  V  +Q  T      KEI     +  E++  +K G+
Sbjct: 332 GVAFGTTDGK--TSY----VPIDNDVLLAQGLTLGTF--KEIFG---RVLEHKKPIKCGY 380

Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS 523
           + KY K V    GI++ G  +D+ML SYVL++ RS H I  +A  WL Y     +E+L  
Sbjct: 381 DTKYMKHVFANVGINLAGVSDDVMLESYVLEAHRS-HTIEKLAANWLKYELRGEEELLGK 439

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQ 582
               +   ++S  +  E A E   ++ +L  L +  L  + KL  +Y  ++ P+ DV+ +
Sbjct: 440 GAKKLSFSQVSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSDVLFK 499

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-S 641
           ME  G+ ID  LL Q +A+++     LEE  ++++GE F LSSPKQLG+ILF K+     
Sbjct: 500 MEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVAGENFKLSSPKQLGEILFDKMGVVLE 559

Query: 642 GAKTK---TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
           GAK K   +G + T+ + L ++   + P+ K  LE+R ++K+ +TY + LP  ++ +  R
Sbjct: 560 GAKPKKTISGNYSTSEEVLSEL-AENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGR 618

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT +  A  +TGRL+S  PNLQNIPI+T+ G+K+R AFIS    KLISADYSQIELRI+
Sbjct: 619 VHTTFEQAVAVTGRLSSTNPNLQNIPIRTEEGRKVREAFISASGCKLISADYSQIELRIM 678

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L + F+N+ DIHR  AAE+FG   +KV+P  RR AK INF ++YG+SPF LA
Sbjct: 679 AHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMYGMSPFGLA 738

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L I R EA +YI ++F RFPG+H+Y+E+T+    + GYVET FGRR+   EI++   +
Sbjct: 739 KNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTFGRRLWLPEIHA-GGA 797

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ERAAINAP+QG+AAD+ + +MI+V K +E+  L +K++LQIHDEL+ EVPE E+ 
Sbjct: 798 RRAAAERAAINAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEV- 856

Query: 939 TASQIIVHSMEKACLPKI-----NLRVPLKVNIKVSNNWQ 973
                    + K  LPKI      L VPL   + V +NW+
Sbjct: 857 --------DLVKENLPKIMDSVTELHVPLIAEVGVGDNWE 888


>gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442]
 gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442]
          Length = 930

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 355/986 (36%), Positives = 533/986 (54%), Gaps = 70/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R    +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKAIAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK   EN    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPTLKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   Y I++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYDIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 846 NAPMQGTASDLIKRAMIDVRNWLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928


>gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76]
 gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385]
          Length = 983

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 357/993 (35%), Positives = 533/993 (53%), Gaps = 76/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 46  MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 157

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 158 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 217

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+   
Sbjct: 218 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 276

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R    +    
Sbjct: 277 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 313

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 314 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 365

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 366 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 421

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK    N    KIG N+KYD+ 
Sbjct: 422 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 473

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 474 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 532

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 533 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 591

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 592 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 651

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 652 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T+ G+K+RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 711 ITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 771 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 831 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941
           NAP+QG+A+D+ +RAMI V + L        D  L +K+++Q+HDELV EV E E+    
Sbjct: 891 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 950

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +   M K  +    L VPL   + V  NW+E
Sbjct: 951 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 981


>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
 gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
          Length = 920

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 341/981 (34%), Positives = 548/981 (55%), Gaps = 79/981 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA   +P ++ K  GL  +A+ GFCN L ++L   +     +H  V
Sbjct: 4   LFLIDAYALIYRSYYAFIKSPRINSK--GLNTSAVMGFCNTLNEVLTKEK----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+   TFR++ +P+YKA R + PE +   +PL++   +A  IP +++ GFEADDII T
Sbjct: 58  AFDH-GKTFRHDAFPEYKAQREETPEDIKLSVPLIKQVLEAMHIPILQVDGFEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PEKM 179
                  +G    +++ DKD  QL+ P   +Y        +I   + V +K+GIP P ++
Sbjct: 117 IATRFGADGIDTFMLTPDKDYGQLIGPNVFMYRPRHGGGYEILGEKEVGEKYGIPTPAQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTAA L+ ++G+++N+L +   IK  K RE +    E 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNMLQHTDEIK-GKLREKVENAVED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVP+ + L+ L +E  +  +L +  + LEF  LIN+            
Sbjct: 236 IKMSKFLATIRTDVPMQLDLDELKVEQPDETKLRAIFEELEFKTLINKF----------- 284

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                 +N  E+K                +Q    ++ T+  N    P+    E + K +
Sbjct: 285 ------LNKAESK-----------PKTDNNQLDLFAENTT--NESDEPKNAKFESI-KTT 324

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q+      Y  + N ++++Q      T  S S    T + DA  ++ + ++ S  ++K  
Sbjct: 325 QH-----EYKLVENEEELRQLCDFFITKESVSIDTETTSTDAISAELVGLSFSVEEKK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +F V       +V  + +   K      I+   K  +E++  +KIG NIKYD  VL RY
Sbjct: 378 -AFYV-------AVPANYEEALK------IVQIFKPLYESDKIMKIGQNIKYDYEVLTRY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDKIS 534
           G++++G   D M+  Y++      H++  +A+  L Y     +E+L  + K    +  +S
Sbjct: 424 GVTLQGKMFDTMIAHYLIQP-ELHHNMDYMAETLLGYQTIHIEELLGPKGKKQKNMRDLS 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + + E+A E++++ L+L  +L P+L    +  ++  ++ P++ V++ ME+ G+ +D + 
Sbjct: 483 PTDIYEYAAEDADITLRLKNVLEPRLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEA 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653
           L+  S   ++ +   E+ IY  +GE+FN+SSPKQ+GDILF KL+      KTKTGQ+ T+
Sbjct: 543 LQDTSKIFTERMKQYEQEIYKEAGEEFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTS 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+ +    +PI++NIL +R + K+ STY D+LP  IN RT  +HT ++ A T TGRL
Sbjct: 603 EEVLQSLES-KSPIVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH+++   + + F  
Sbjct: 662 SSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAFRE 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AA+I+ V+I+KV+   R+ AK  NF IIYGI+ + LA ++ IP  EA + I+
Sbjct: 722 GHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIE 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +  Y+E  K   R  GY ET+F RR +  +INS  +++R   ER AINAPIQ
Sbjct: 782 GYFRTFPKVQVYMEHAKEVARAKGYAETLFHRRRYLADINSRNATVRGFAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+ ADI + AM+ + +  +   + +KM+LQ+HDEL F V  EE     +I++  M+ A  
Sbjct: 842 GTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEEREQVERIVIEEMQNA-- 899

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L VPL  +     NW E
Sbjct: 900 --YPLNVPLIADAGWGKNWLE 918


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 341/988 (34%), Positives = 545/988 (55%), Gaps = 93/988 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  GL  +AI GFCN L ++L   +     ++  V
Sbjct: 4   LFLLDAYALIYRSYYAFIKNPRINSK--GLNTSAIMGFCNTLNEVLTKEK----PTYIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+  +TFRNE +P YKA R + PE +   +PL++   +A+ IP +++ GFEADD+I T
Sbjct: 58  AFDH-GLTFRNEAFPQYKAQREETPEDIRKSVPLIKDILKAYHIPILQVDGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175
               A+  G    +++ DKD  QLVS    +        Y+T+ E +     V++K+GI 
Sbjct: 117 LATQAQDAGVETFMLTPDKDYGQLVSDNVFIFRPRHGGGYETMGERE-----VMEKYGIS 171

Query: 176 PEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             K+V  L AL GD+ DN PG PG+G KTA  L+ E+G +E+++   S +K    +  + 
Sbjct: 172 SPKLVIDLLALMGDASDNFPGCPGVGEKTAVKLINEFGTVEDLMARTSELK-GALKTKVE 230

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
            + +  ++S+ L  +RTDVPI + L+ L L + +  RL      LEF    +R+    + 
Sbjct: 231 THLDDIKMSKFLATIRTDVPIDLQLDELKLVEPDHTRLTEIFTELEFKSFADRILNKSEK 290

Query: 295 DAANIEPVV--LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              N    +    +NTTE+  +  +T  D   TIKT Q                      
Sbjct: 291 KPINTNQQLDLFAVNTTEHADVTEKTNYD---TIKTVQHD-------------------- 327

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                          Y  I N +++Q+      T  + S    T ++ A  ++ + ++ +
Sbjct: 328 ---------------YKLIENEEEMQRVCDLFLTKQTVSIDTETTSLYAMDAELVGLSFA 372

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             ++        +  ++ +     +         ++I++  K  +E+E  +K+G N+KYD
Sbjct: 373 VEER--------QAFYVPVPADRKE--------AEKIVNIFKPLYESEAIMKVGQNMKYD 416

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSS 527
             VL  YG+ +RG   D M+  Y++      H++  +A+ +L+Y    I        K  
Sbjct: 417 LEVLRNYGVCLRGALFDTMIAHYLIQP-ELRHNMDYMAEVYLNYQTIHIDTLIGAKGKHQ 475

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
             + ++S +QV E+A E++++ LQL  +L PKL   +   ++ +++ P++ V+++ME+ G
Sbjct: 476 KSMRELSPAQVYEYAAEDADITLQLKNVLEPKLREVEAEELFYQIEMPLVPVLAEMEMNG 535

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646
           ++ID   LK+ S  +++ +  LE  IY+L+G +FN++SPKQ+GD+LF ++K      KTK
Sbjct: 536 VRIDTQSLKETSDILTRRMHDLEARIYELAGGEFNIASPKQVGDMLFGRMKIIDKPKKTK 595

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ+ T+ + L+Q+  G + I+ +IL++R L K+  TY D+LP  IN RT R+HT ++  
Sbjct: 596 TGQYVTSEEVLQQLR-GKHEIVGDILDYRGLKKLLGTYVDALPKLINTRTGRIHTSFNQT 654

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S EPNLQNIP++ + G++IR+AFI        SADYSQIELR++AH++    
Sbjct: 655 VTATGRLSSSEPNLQNIPVRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAH 714

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F    DIH   AA+I+G  +E V+   R  AK  NF IIYGI+ F LA +L I R+
Sbjct: 715 MIEAFREGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIYGITVFGLAERLDIDRN 774

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA   I  YF  FP + +Y+E +K   R +GYVETIF RR +  +INS  +++R   ER 
Sbjct: 775 EAKQLIDGYFMMFPQVKDYMEHSKEVARTHGYVETIFHRRRYLPDINSHNATVRGFAERN 834

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AMI +++      + +KM+LQ+HDEL F V  EE     +I++ 
Sbjct: 835 AINAPIQGSAADIIKVAMIRIYRRFMKEGIRSKMILQVHDELNFSVFPEEKERVERIVME 894

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M++A      LRVPL  +     NW E
Sbjct: 895 EMQQA----YPLRVPLVADSGWGTNWLE 918


>gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
 gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
          Length = 907

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 355/992 (35%), Positives = 528/992 (53%), Gaps = 105/992 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A P L+    G+   A+ G  NML +L    +K+   S 
Sbjct: 1   MSDKTPLILVDGSSYLYRAYHALPPLTNSK-GVATGAVKGVINMLRRL----QKDYPDST 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR++IY +YKANRP +P+ L  Q+  +    +  G+P +   G EADD+
Sbjct: 56  IAVVFDAKGKTFRDDIYKEYKANRPPMPDDLREQVQPIHDIVRGMGLPLLCEPGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A +    V + + DKD+ QLV+    L +T+ +  +D + V+ K+GIPPE ++
Sbjct: 116 IGTLARQASEADCHVIVSTGDKDMAQLVNERVTLVNTMNDTVMDPQGVVDKFGIPPELII 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLL-------QEYGNLENI----LINASRIKQKKR 229
            L AL GD +DNIPG+PG+G KTA  LL       Q Y +L+ I       A  +  K  
Sbjct: 176 DLLALMGDKVDNIPGVPGVGEKTALGLLQGLGGLNQIYASLDQIEGLPFRGAKTMAAKLE 235

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLINR 287
           +E      + A LS  L  + TD  + +PL +  LE+   +   L+   K LEF   I+ 
Sbjct: 236 KER-----DNAYLSYTLATIATD--LELPLVYADLENAPPDNVALLDLFKELEFKGWID- 287

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
                                 E +G A+  +   +   +   + ++ DQ S        
Sbjct: 288 ----------------------ELEGAALADDAPAEVDTREQHYVTVLDQNS-------- 317

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
              F E L +LS  P+                            F   T+T    + +  
Sbjct: 318 ---FDEWLARLSAAPL----------------------------FAFDTETTSLNYMEAE 346

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            + +S   ++ + ++        + +  S   T        +L+ LK   E+    K+G 
Sbjct: 347 IVGLSFAVERGEAAY--------VPLAHSYPGTPAQLDRDAVLAALKPLLEDPDKAKLGQ 398

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           N+KYD  VL RY I+M+G   D ML SYVLDS  + HD+ S+A K+L  +    +++   
Sbjct: 399 NLKYDASVLARYDIAMQGIAFDTMLESYVLDSTGTRHDMDSLALKYLGRSTTHFEDVAGK 458

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582
               I  DK+   +   +A E++ V L L   L PKL     L  V   ++ P++ V+S+
Sbjct: 459 GAKQITFDKVGIEEAAAYAAEDAEVTLALHETLWPKLQETPSLASVLTDIELPLVPVLSR 518

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G  +D++ L + S E+ + L +LEE  ++++G+ FNL SPKQLG ILF KL+ P  
Sbjct: 519 MERCGALLDEERLWEHSRELGQRLQALEEEAHNVAGQVFNLGSPKQLGQILFEKLELPVL 578

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  G   T  + L+++   D P+ K ++E R LSK+KSTY D LP  IN  T R+HT 
Sbjct: 579 KKTPKGAPSTAEEVLQELAL-DYPLPKLLIEHRGLSKLKSTYTDKLPGMINSHTGRIHTS 637

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A T TGRL+S +PNLQNIPI+T+ G++IR+AFI+    ++++ADYSQIELRI+AH++
Sbjct: 638 YHQAVTATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAAEGYQIVAADYSQIELRIMAHLS 697

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F  +LD+H   AAE+FGV ++ VS + RR AK INF +IYG+S F LA QL 
Sbjct: 698 EDPGLLAAFRENLDVHSATAAEVFGVPLDSVSGEQRRKAKAINFGLIYGMSAFGLARQLH 757

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R EA  YI  YF R+PG+ +Y+ +T+    + GYVET+FGRR++  EIN      +  
Sbjct: 758 LDRGEAQRYIDVYFERYPGVRQYMVRTRALAHEQGYVETLFGRRLYLPEINVRNKMRQQA 817

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI + AM++V   + D  +  KM++Q+HDELV EV E ++     
Sbjct: 818 AERTAINAPMQGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDELVLEVAESQLDPVCD 877

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   M  A     +L VPL V      NW E
Sbjct: 878 ELCRLMSAAA----DLAVPLLVEAGRGANWDE 905


>gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
 gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
          Length = 851

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 332/902 (36%), Positives = 507/902 (56%), Gaps = 67/902 (7%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +P+ L  Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ Q
Sbjct: 1   MPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQ 60

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           LV     L +T+    +D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  
Sbjct: 61  LVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATA 120

Query: 207 LLQEYGNLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
           LLQ  G LE +  N  +I        K   + + E    A+LS +L  ++ DV +    +
Sbjct: 121 LLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQ 180

Query: 261 HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEI 320
            L+ +  +   L+S    L F   +  +               LD  T    GI     +
Sbjct: 181 TLLKQTPDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GI-----V 216

Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW 380
             D   KTS   S++  T+  ++   P+              I+   Y  I+N +D Q W
Sbjct: 217 TADEQTKTS---SVTVSTAATHAAAIPES---------PAAHIDRSQYQTILNEQDFQLW 264

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           ++KL+     +F   TD +D   +  + ++ + + + +     V   ++D      +D  
Sbjct: 265 LEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW- 322

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG 499
                   +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S 
Sbjct: 323 --------VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSV 374

Query: 500 RSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
              HD+ S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   +
Sbjct: 375 GGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRI 434

Query: 557 RPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
            P  ++E   KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+N 
Sbjct: 435 HP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 492

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
           Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E
Sbjct: 493 YELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIE 551

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           +R L+K+KSTY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++I
Sbjct: 552 YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRI 611

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R+AF++P   K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++V
Sbjct: 612 RQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQV 671

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           S + RR AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++  
Sbjct: 672 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRA 731

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE- 912
            Q GYVETIFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E 
Sbjct: 732 AQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIER 791

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +     K+L+Q+HDELVFEV E  ++     +   ME A      L VPL       +NW
Sbjct: 792 EGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNW 847

Query: 973 QE 974
           ++
Sbjct: 848 EQ 849


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 342/996 (34%), Positives = 546/996 (54%), Gaps = 63/996 (6%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + +YRA +A    P+ +   DG+  +A+ G+ N L  +LQN +     +H   
Sbjct: 9   LFLLDSMALLYRAHFALIRKPIFTS--DGVNTSALFGYANALLDILQNQKP----THLGA 62

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A T R+ ++P YKA R ++PE L   +P  +   +A  IP +E+ G+EADDII T
Sbjct: 63  AFDTSAPTPRHTMFPAYKAQREEMPEDLSVAIPAAKRLLKAMRIPVLEVDGWEADDIIGT 122

Query: 124 YTYIAE-KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PE 177
             + AE + GF   +++ DKD  QLV+  T +Y   ++    E + ++ V ++WG+  P 
Sbjct: 123 LAHHAEARGGFETYMVTPDKDFGQLVTENTLIYKPGRQGADTEILGVKEVCERWGVSNPG 182

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L  L GD+ DNIPGI G+G KTAA L+Q++G++E +L     I + K ++ +   A
Sbjct: 183 QVIDLLGLMGDASDNIPGIAGVGEKTAAKLIQQFGSVEAMLDRVDEI-EGKLKDKVKAGA 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-------AT 290
           E AR+S++L  +  D P+T+ L+ L L   +   L S L   EF  L  R+         
Sbjct: 242 EMARISKQLATIMVDAPLTVQLDDLALLGFDEEALKSILVEFEFNALGRRLFGDDFKAGR 301

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                              ++KG  ++ ++      +T   ++  D+ S           
Sbjct: 302 GRQLGGGVAPVSAPAPPAKKSKGGDLQGDL-FGAGAETIPVAAAGDEGSAEAMADAAAAP 360

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
            L  L+ +   P     Y  +    + + W++KL  + +  F   TD +D   ++ + IA
Sbjct: 361 HLPGLKTIRDIP---HRYELVKTADERRAWLEKLAGVDAFCFDTETDGLDPLSARMLGIA 417

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S    +                H  ++      + KE+    K F       KIGHN+K
Sbjct: 418 FSIAPHE------------GCYFHIPEERDEHLAVLKEV----KTFLSTSKAEKIGHNLK 461

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKS 526
           +D  V   +GI + G F D ML+  +++  +  H +  +++++L Y+   I   +  +K 
Sbjct: 462 FDLRVFLAHGIEVAGPFFDTMLVHALVEPDQ-RHGMDYLSERYLGYSPVSITTLIGEKKG 520

Query: 527 SIPIDKISDSQVQ---EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           + P   +++  ++   E+A E+++V LQL   LRP+L    L+ V+  ++ P++ V++ M
Sbjct: 521 ATPQKSMAEVPLEPLAEYAAEDADVTLQLSQKLRPELERLGLMKVFYEIEAPLLPVLAHM 580

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSG 642
           E  G+++D   L++   E+      L E I       FNL+SPKQLG++LF  LK     
Sbjct: 581 EHEGVKVDVPTLEEFGQELLSQANVLRERIQGYVDWPFNLNSPKQLGEVLFDHLKLMEKP 640

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT TGQ++T  Q L  +  G +PII +IL +R+ +K+KSTY D+LP  +N  T RVHT 
Sbjct: 641 KKTATGQYQTNEQTLLTLQ-GRHPIIDDILAYRECTKLKSTYVDALPAAVNPLTHRVHTT 699

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759
           +      TGR+AS +PNLQNIPI+TD G++IR+AF+  P K+   L+SADYSQIELR++A
Sbjct: 700 FHQLMAATGRMASTDPNLQNIPIRTDQGREIRKAFV--PEKEGWVLMSADYSQIELRVMA 757

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    + + F+   DIH+  AA+++GV +++V P+MRR AK +NF IIYGIS F L+ 
Sbjct: 758 ELSADPAMMEAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYGISAFGLSQ 817

Query: 820 QL-RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
           +L    R+EAA  I+ YF ++PG+  Y+E      R  GYVET+ GRR +  +INS   +
Sbjct: 818 RLGNTSRTEAAQIIENYFKQYPGVKRYMEDIVTQARTQGYVETLTGRRRYLRDINSSNMT 877

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R+  ER A+NAPIQG+AAD+ + AM++V +SL +    T+MLLQ+HDEL+FEVP EE+ 
Sbjct: 878 VRSATERVAMNAPIQGTAADMIKLAMVNVARSLREGGFKTRMLLQVHDELLFEVPLEEVD 937

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +I   M +A LP   L+VP+ V       W E
Sbjct: 938 KVKPVIEQGMREA-LP---LKVPVLVEAGTGKTWLE 969


>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58]
 gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58]
          Length = 938

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 356/993 (35%), Positives = 533/993 (53%), Gaps = 76/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R    +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK    N    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T+ G+K+RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VS + RR+AK+INF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941
           NAP+QG+A+D+ +RAMI V + L        D  L +K+++Q+HDELV EV E E+    
Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 905

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +   M K  +    L VPL   + V  NW+E
Sbjct: 906 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 936


>gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
          Length = 927

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 341/984 (34%), Positives = 541/984 (54%), Gaps = 74/984 (7%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYR++YA    P ++ K  GL  +A+ GFCN L ++L   +     SH 
Sbjct: 2   DKLFLIDAYALIYRSYYAFINNPRINSK--GLNTSAVMGFCNTLNEVLNKEQ----PSHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD+  +TFRNE +P YKA R   PE +   +P+++    A+ IP +++ GFEADD+I
Sbjct: 56  GVAFDH-GLTFRNEAFPQYKAQREATPEDIKRSVPIIKDILTAYHIPVLQVDGFEADDVI 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PE 177
            T    A ++G    +++ DKD  QLV P   +Y        E +  + V +K+ I  P 
Sbjct: 115 GTLALKAGEQGIDTYMLTPDKDYAQLVRPNVYMYRPRHGGGYETMGPDEVNQKYNISSPL 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GDS DN PG PG+G KTA+ L+ E+G +E +L N +++K  K RE +    
Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTASKLINEFGTVEKLLENTAQLK-GKMREKVEGAV 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++S+ L  +RTDVP+ + LE L L++ +  +L      LEF    NR+    +    
Sbjct: 234 EDIKMSKFLATIRTDVPLELDLEQLRLKEPDTAKLQEIFTELEFKSFANRLLNKAE---- 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS-EQTPQKLFLERLQ 356
             +P        +N+ +++  E         S+F  LS   +   + E TP +       
Sbjct: 290 --KP-----KKADNRQLSLFDEPAM-AEADNSRFEPLSAPVANRQTIETTPHE------- 334

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +    DIQ  V  L      S    T + +A  ++ + ++ +  ++
Sbjct: 335 -----------YHLVQTEADIQALVNLLSAADVISLDTETTSTNAIDAQLVGLSFAVEEK 383

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K          ++ +    ++         + I+   K  +EN + LK+G NIKYD  VL
Sbjct: 384 K--------AYYVPVPEQANE--------AQNIVDKFKAIYENPNTLKVGQNIKYDLEVL 427

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPID 531
             YGI ++G   D M+  Y+L      H++  +A+ +L+Y    I        K+   + 
Sbjct: 428 RNYGIMLQGPLFDTMIAHYLLQP-ELRHNMDFMAEVYLNYETVHIDALIGAKGKTQKNMR 486

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +++ S+V  +A E++++ LQL  +L+PKL+   +  ++  ++ P+I V+++ME  G++ID
Sbjct: 487 ELAPSEVYAYACEDADITLQLKNVLQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRID 546

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQW 650
              LK+ S   ++ +L LE+ IY  +G+ FN++SPKQ+GDILF ++K      KTKTGQ+
Sbjct: 547 TAALKETSQVFTERMLQLEQEIYQAAGKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQY 606

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T+ + L+ +    +PI+ +IL++R L K+  TY D+LP  IN RT  +HT ++ A T T
Sbjct: 607 VTSEEVLQTLRS-KHPIVAHILDYRALKKLLGTYVDALPKLINPRTGHIHTSFNQAVTAT 665

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+ FI     +  SADYSQIELR++AH+++   +   
Sbjct: 666 GRLSSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLDA 725

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   AA+I+   + +V+   R  AK  NF IIYGI+ F LA +L I R+EA  
Sbjct: 726 FREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGIIYGITVFGLADRLNIERAEAKQ 785

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  YF  FP + +Y+E+ K   + NGYVET F RR +  +INS  +++R I ER AINA
Sbjct: 786 LIDGYFKMFPQVRDYMEQAKETAKANGYVETFFHRRRYLPDINSSNATVRGIAERNAINA 845

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AM+ + +  +   + +KM+LQ+HDEL F V   E     +I++  M+ 
Sbjct: 846 PIQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNFSVLPTEKELVERIVMEEMQ- 904

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A  P   L VPL  +    NNW E
Sbjct: 905 AAYP---LDVPLVADGGWGNNWLE 925


>gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190]
          Length = 975

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 356/986 (36%), Positives = 533/986 (54%), Gaps = 70/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 46  MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 157

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 158 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 217

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+   
Sbjct: 218 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIK-GKVGENLRAA 276

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R A  +    
Sbjct: 277 LPRLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTAPKW---- 313

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E   +K    + 
Sbjct: 314 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDVFGSDSIGEQAALNAEMPSEK----QA 366

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 367 EKATA-PERLD-YQAVTTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIA--- 421

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK    N    KIG N+KYD+ 
Sbjct: 422 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 473

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 474 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 532

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 533 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 591

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  + + FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 592 DRAELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 651

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 652 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 710

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 711 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 770

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 771 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 830

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 831 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 890

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 891 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 949

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 950 AK--VDGGLLDVPLVAEVGVGENWEE 973


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
 gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
          Length = 952

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 353/995 (35%), Positives = 552/995 (55%), Gaps = 66/995 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L    K+  
Sbjct: 1   MNSTDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPSGPTFRHEAYKQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    +   E + IE +  K+ I
Sbjct: 115 DDVIGTLATEAGRQGIVTYMMTPDKDYGQLVSENVFMYRPKHSGGFEVMGIEEIKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
              E+++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  R+K   + + +
Sbjct: 175 QSTEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVTEFGSIENLLAHTDRLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY- 292
               E    S+ L  ++ DVPI + +  L+ E+ N   L    + LEF  LI+RV     
Sbjct: 234 EANREMIAFSKFLATIKVDVPIKLDMNTLVREEPNEEELRKIFEELEFRTLIDRVLKKTG 293

Query: 293 -----DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
                  ++A+ +P    +      G    T    +  ++   F++ +D     N     
Sbjct: 294 SPLPSSSNSASPDPYAGTLFAQPTDG----TTSGNNAPVQGDLFANFAD-----NGTGDA 344

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDI-QQWVQKLETIGSASFKIITDTMDAFHSKP 406
           +   L RL+         D   ++++T++  ++ +QKL T    S    T   +   ++ 
Sbjct: 345 KNSILTRLEMF-------DVDYQLIDTEEKRKKIIQKLLTKEILSIDTETTGTEPMEAEL 397

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + ++ S  D ++   +        + V  ++D   K      I++  +  +ENE+ +K+G
Sbjct: 398 VGMSFS--DAENQAYY--------VPVPANRDEALK------IVNEFRPLYENENSMKVG 441

Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK 522
            NIKYD +VL  YG+ ++G   D ML  YVL      H++  +A+ +L Y      E++ 
Sbjct: 442 QNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIG 500

Query: 523 SR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           ++ K+   +  +    V  +A E+++V L+L  +L  +L      H++  ++ P++ V+ 
Sbjct: 501 AKGKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEHAAEHLFYEIEMPLVPVLV 560

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFP 640
            +E  G++ID + LKQ S   +  L  +E+ IY L+G E FN+ SPKQ+G++LF +LK  
Sbjct: 561 NIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALAGGETFNIGSPKQVGEVLFDRLKIV 620

Query: 641 SGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
             AK TKTGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN RT R+
Sbjct: 621 EKAKKTKTGQYVTSEEVLESLR-NKHAIIGKILEYRGLKKLLSTYIDALPQLINPRTGRI 679

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++ A T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+A
Sbjct: 680 HTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMA 739

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   +   F +  DIH   AA+I+ V+I  V+  MRR AKT NF IIYGIS F LA 
Sbjct: 740 HLSQDKNMIDAFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVFGLAE 799

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ +PR EA + I  YF  +P + EY++++    R+NGYVETIF R+    +INS  + +
Sbjct: 800 RMNVPRQEAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRKRFLPDINSRNAVV 859

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAPIQGSAADI + AM  +++ L+ + L  KM+LQ+HDEL F VPE E   
Sbjct: 860 RGYAERNAINAPIQGSAADIIKVAMSLIYQRLQSNNLKAKMILQVHDELNFSVPEAEKEI 919

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +I++  ME+A      + VPLK +     NW E
Sbjct: 920 IQKIVIEEMERAY----RMLVPLKADFGWGKNWLE 950


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 941

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 354/992 (35%), Positives = 553/992 (55%), Gaps = 71/992 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  ++ LFL+D  + IYRA+YA   +P ++ K  G   +AI GF N L ++L    K+  
Sbjct: 1   MNSDDKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + IE V  K+ I
Sbjct: 115 DDVIGTLATEAGQQGITTYMMTPDKDYGQLVSENVFMYRPKHTGGFEVMGIEQVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRE 231
              ++++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   K + E
Sbjct: 175 QSTQQVIDMLGLMGDASDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDKLKGALKTKVE 234

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-AT 290
           N     E    S+ L  ++ DVPI + ++ L+ E+ N   L    + LEF  LI+RV   
Sbjct: 235 N---NREMIIFSKFLATIKIDVPIKLDMKALVREEPNEEELRKIFEELEFRTLIDRVLKK 291

Query: 291 TYDCDAANIEPVVLDINT--TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
           +     ++I P +       T+N G            ++ + F   +      N  +  +
Sbjct: 292 SSSPSPSSIAPDLFSPGPLFTQNNG-----------PVQGNLFEEFAS-----NGPEDSK 335

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
              L RL+ +      N  Y  I   +   + ++KL T    S    T + +   ++ + 
Sbjct: 336 NSNLARLETI------NADYQLIDTEEKRSKIIKKLLTTKILSIDTETTSAEPMEAELVG 389

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           ++ S  D ++   +        + V   ++   K      I++  +  +ENE  +K+G N
Sbjct: 390 MSFS--DTENQAYY--------VPVPAEREEALK------IVNEFRPLYENETSMKVGQN 433

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
           IKYD LVL  YG+ ++G   D M+  YVL      H++  +A+ +L Y      E++  R
Sbjct: 434 IKYDILVLQNYGMEVKGELFDTMIAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGPR 492

Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            K+   +  +   +V ++A E+++V L+L  +L  +L  + + H++  ++ P++ V++ +
Sbjct: 493 GKNQKNMRDLPPEEVYKYACEDADVTLKLKNVLEEELKKQGVEHLFYEIEMPLVRVLANL 552

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G++ID + LKQ S   +  L  +E+ IY+L+ E FN++SPKQ+G+ILF KLK    A
Sbjct: 553 ESNGVRIDTEALKQTSEHFTVRLQEIEKEIYELAEETFNIASPKQVGEILFDKLKITDKA 612

Query: 644 K-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           K TKTGQ+ T+ + LE +    + II  ILE+R L K+  TY D+LP  IN RT R+HT 
Sbjct: 613 KKTKTGQYVTSEEVLESLR-NKHEIIGKILEYRGLKKLLGTYIDALPLLINPRTGRIHTS 671

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++ A T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH++
Sbjct: 672 FNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLS 731

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   +   F +  DIH   AA+I+ V+I+ V+  MRR AKT NF IIYGIS F LA ++ 
Sbjct: 732 EDKNMIDAFLSGYDIHAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYGISIFGLAERMN 791

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R EA + I  YF  +P + EY++K+    R+ GYVETIF R+    +INS  +++R  
Sbjct: 792 VDRKEAKELIDGYFETYPQVREYMDKSIQIAREQGYVETIFHRKRFLPDINSRNATVRGY 851

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAPIQGSAADI + AM  ++K  + + L  KM+LQ+HDEL F VPE E     Q
Sbjct: 852 AERNAINAPIQGSAADIIKVAMARIYKRFQSNNLKAKMILQVHDELNFSVPEAEKEFVQQ 911

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I++  ME+A      + VPL+ +     NW E
Sbjct: 912 IVIEEMERAY----RMHVPLRADCGWGKNWLE 939


>gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136]
          Length = 930

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 354/986 (35%), Positives = 530/986 (53%), Gaps = 70/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116
            AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I   E
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P
Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++    AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+   
Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS  LV ++TDV +     H  L D                + + R    +    
Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355
                +V+D      +    E E + +T      F S S  + + +N+E     +  E+ 
Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +  P   D Y  +         + KL    +      T ++DA ++  + I+I+   
Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376

Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 F+  E ++I   V  S  +  +    +++L  LK    N    KIG N+KYD+ 
Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 428

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           V   YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I  
Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QI
Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648
           D+  L + SAE+   L+ LE+  Y  + + FNL+SPKQL +ILF K+  P+    KT  G
Sbjct: 547 DRAELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  
Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L 
Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A
Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAI
Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M
Sbjct: 846 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            K  +    L VPL   + V  NW+E
Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928


>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
 gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
          Length = 952

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 357/992 (35%), Positives = 545/992 (54%), Gaps = 60/992 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L    K+  
Sbjct: 1   MNSTDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PSHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A K G    +++ DKD  QLV+    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGKRGITTYMMTPDKDYGQLVADNVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRE 231
               +++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  R+K   K + E
Sbjct: 175 RSTAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDRLKGALKIKVE 234

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N     E    S+ L  ++ DVPIT+ ++ L+ E+ N   L    + LEF  L++RV   
Sbjct: 235 N---NREMITFSKFLATIKVDVPITLDMKALVREEANEDELRKIFEELEFRTLLDRVLKK 291

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTT---IKTSQFSSLSDQTSKINSEQTPQ 348
            +    +        +       A + + + D     ++ + F++ +D     +   + +
Sbjct: 292 GNSPLPSSSTPSASPDLYAGTLFAAQPKTNADEKSGPVQGNLFANFAD-----DGADSSK 346

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
              L RL+ L      +  Y  I   K  + ++QKL  I S    I T+T      +   
Sbjct: 347 NSNLTRLELL------DTDYQLIDTEKKRKDFIQKL--ITSEILSIDTETTGTEPMEAEL 398

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + +S  D ++   +        + V   ++   K      I++ L+  +ENE  LK+G N
Sbjct: 399 VGMSFSDAENQAYY--------VPVPPIREEALK------IVNELRPLYENEKSLKVGQN 444

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
           IKYD +VL  Y I ++G   D ML  YVL      H++  +A+ +L Y      E++  R
Sbjct: 445 IKYDMIVLQNYEIQVKGPLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGPR 503

Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            K+   +  +S  +V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +
Sbjct: 504 GKNQKNMRDLSPEEVYRYACEDADVTLKLKNILEKELKEQGGEHLFHEIEMPLVPVLVNI 563

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+++D + LKQ S   +  L  +E+ IY L+ E FN++SPKQ+G+ILF KL+    A
Sbjct: 564 ESNGVRLDTEALKQSSEHFTIRLQEIEKEIYALADETFNIASPKQVGEILFDKLRIVEKA 623

Query: 644 K-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           K TKTGQ+ T+ + LE +  G + II  ILE+R L K+ STY DSLP  IN RT  +HT 
Sbjct: 624 KKTKTGQYVTSEEVLESLR-GKHGIIGKILEYRGLKKLLSTYIDSLPQLINPRTGHIHTS 682

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++ A T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH++
Sbjct: 683 FNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLS 742

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   +   F +  DIH   AA+I+  +I  V+  MRR AKT NF IIYGIS F LA ++ 
Sbjct: 743 EDRNMIDAFRSGYDIHAATAAKIYKTDISDVTADMRRKAKTANFGIIYGISVFGLAERMN 802

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R EA + I  YF  +P + EY++++    R+NGYVETIF R+    +INS  + +R  
Sbjct: 803 VSRQEAKELIDGYFETYPQVKEYMDRSIRIARENGYVETIFHRKRFLPDINSRNAVVRGY 862

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAPIQGSAADI + AM  +H+    + L  KM+LQ+HDEL F VP  E     +
Sbjct: 863 AERNAINAPIQGSAADIIKVAMAHIHRRFVSNNLKAKMILQVHDELNFSVPASEKEIVQK 922

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I++  ME A     ++ VPLK +     NW E
Sbjct: 923 IVIEEMEHAY----SMHVPLKADCGWGKNWLE 950


>gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3]
 gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
          Length = 916

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 346/987 (35%), Positives = 524/987 (53%), Gaps = 94/987 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     S  AV
Sbjct: 6   DNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----SQMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRGQIAPLHQIIKALGLPLVCIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A KEG AV I + DKD+ QLV     L +T+    +    V +K+G+ PE ++ L 
Sbjct: 121 IATQASKEGRAVLISTGDKDMAQLVDDNVTLINTMTNTVMGPAEVTEKFGVGPELIIDLL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G ++NIL    ++ +      K     I E+ 
Sbjct: 181 ALQGDKADNIPGLPGVGEKTALAMLLGVGGVDNILAAPEKMPELGFRGSKTMPAKIAEHG 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++ DV +      + +E  N   L+     +EF + +  V         
Sbjct: 241 DMLKLSYELATIKLDVELEQDWRTMDIEPANKDELVKCYGEMEFKRWLAEV--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       +NK  A   E + +  +K        D  +K                 
Sbjct: 292 -----------LDNKSTATADEDNDEAVVK-------QDIEAK----------------- 316

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++ + +  W+  L      +    T +++   ++ + I        
Sbjct: 317 ----------YDTILSVEQLDSWIATLSKADLIAIDTETTSLNYMEAELVGI-------- 358

Query: 418 DDTSFKVET---IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473
              SF VE     ++ LS H   D+     L K  +   L    ENE   K+G N+KYD 
Sbjct: 359 ---SFAVEAGKAAYLPLS-HDYVDAP--EQLDKALVFEKLTPLLENEAIKKVGQNLKYDI 412

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +    GI ++G + D ML SYV +S  S H++  +A K+L +   + +EI       + 
Sbjct: 413 SIFANAGIKLKGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLT 472

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I       +A E++++ L+L   L P+L  + +L  V+  ++ P+ID++S +E  G+
Sbjct: 473 FNQIPLETAAPYAAEDADITLRLHQHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGV 532

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  LL Q S E+++ +  L+   ++++G+ FNL+SPKQL ++ F KL +P   KT  G
Sbjct: 533 LIDSMLLGQQSEELARKIDDLQTKAHEIAGQPFNLASPKQLQELFFEKLGYPIIKKTPKG 592

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++   D P+ K ILE R L+K+KSTY D LP  +N ++ RVHT Y  A+ 
Sbjct: 593 APSTAEEVLVELAL-DYPLPKIILEHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANA 651

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIPI+T+ G++IR AFI+P  +K+++ADYSQIELRI+AH+++   L 
Sbjct: 652 ATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGRKILAADYSQIELRIMAHLSQDKGLL 711

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH+  AAE+F V+  +V+   RR AK +NF +IYG+S F LA QL IPR+EA
Sbjct: 712 TAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRAEA 771

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF R+PG+  Y+E+T+      GYV T+FGRR++   I    +  R   ERAAI
Sbjct: 772 QRYIDTYFKRYPGVLNYMEETRAIATDLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAAI 831

Query: 889 NAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI ++AMI+V K +E +      M++Q+HDELVFEV  ++  +    I   
Sbjct: 832 NAPMQGTAADIIKKAMINVAKWIETETNGEITMIMQVHDELVFEVDADKADSLQVKICEL 891

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M  A      L V L     + +NW++
Sbjct: 892 MAAAA----TLDVELLAEAGIGDNWEQ 914


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 355/1001 (35%), Positives = 553/1001 (55%), Gaps = 78/1001 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   + LFL+D  + IYR++YA    P ++ K  G   +AI GF N L ++L    K+  
Sbjct: 1   MNSTDKLFLLDAYALIYRSYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    +   E + IE +  K+ I
Sbjct: 115 DDVIGTLATEAGRQGIITYMMTPDKDYGQLVSDNVFMYRPKHSGGFEVMGIEEIKNKFNI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
              E+++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 RSTEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVAEFGSIENLLAHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288
               E    S+ L  ++ DVPI + +  L+ E+ +  +L    + LEF  LI+RV     
Sbjct: 234 EANREMITFSKFLATIKVDVPIKLDMTTLVREEPDEEKLRKIFEELEFRTLIDRVLKKSG 293

Query: 289 --------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
                   + + D  A  +    +D  T EN G            ++   F++ +D  + 
Sbjct: 294 APLSSSSNSVSPDLYAGTLFARPVDSPTPENNG-----------PVQGDLFANFADNGTG 342

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
            N+E +           L+   + +  Y  I   +   + +QKL T    S    T   +
Sbjct: 343 -NAENS----------NLTHLEMLDVDYQLIDTEEKRSEIIQKLLTTEILSIDTETTGTE 391

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
              ++ + ++ S  + +   ++ V        V  ++D   K      I++  +  +ENE
Sbjct: 392 PMEAELVGMSFSNAENR---AYYV-------PVPANRDEALK------IVNEFRPLYENE 435

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-- 517
           + +K+G NIKYD +VL  YG+ ++G   D ML  YVL      H++  +A+ +L Y    
Sbjct: 436 NSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLRYRTIH 494

Query: 518 -KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
             E++ SR K+   +  +    V  +A E+++V L+L  +L  +L  +   H++  ++ P
Sbjct: 495 IDELIGSRGKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAEHLFYEIEMP 554

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILF 634
           ++ V+  +E  G++ID + LKQ S   +  L  +E+ IY L+ GE FN++SPKQ+G++LF
Sbjct: 555 LVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALANGETFNIASPKQVGEVLF 614

Query: 635 TKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            KLK    AK TKTGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN
Sbjct: 615 DKLKIVEKAKKTKTGQYVTSEEVLESLR-NKHAIIGKILEYRGLKKLLSTYIDALPQLIN 673

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            RT R+HT ++ A T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQI
Sbjct: 674 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQI 733

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+AH+++   +   F +  DIH   AA+I+ V+I +V+  MRR AKT NF IIYGIS
Sbjct: 734 ELRIMAHLSQDRNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGIS 793

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F LA ++ + R EA + I  YF  +P I EY++K+    R+NGYVETIF R+    +IN
Sbjct: 794 VFGLAERMNVSRQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRKRFLPDIN 853

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S  + +R   ER AINAPIQGSAADI + AM  +++ ++ + L  KM+LQ+HDEL F VP
Sbjct: 854 SRNAVVRGYAERNAINAPIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVP 913

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E E     +I++  ME+A      + VPLK +     NW E
Sbjct: 914 EAEKEIIQKIVIEEMERAY----RMLVPLKADFGWGKNWLE 950


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 347/988 (35%), Positives = 551/988 (55%), Gaps = 57/988 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MNSIDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E +  E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDRVFMYRPKHTGGFEVMGTEEVKTKFNI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
              E+++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QTTEQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++TDVPI + ++ L+ E+ N   L    + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKTDVPIQLDMDSLVREEPNEEELRKIFEELEFRTLIDRVLKKGS 293

Query: 294 CDAANIEPV--VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            ++++  P   V D+           +  +    I+   F++ + + + ++         
Sbjct: 294 GNSSSPTPTSPVPDLFAGTLFAQPQTSTPENSAPIQGDLFANFAGEGTGVSENSN----- 348

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQ-QWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
           L RL+ L       D   ++++T+D + + +QKL T    S    T   +   ++ + ++
Sbjct: 349 LTRLEML-------DVDYQLIDTEDKRAEIIQKLLTSEILSIDTETTGTEPMDAELVGMS 401

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S  + +          ++ +     +          +I++  +  FENE  +K+G NIK
Sbjct: 402 FSDAENR--------AYYVPVPAEREE--------VLKIVNEFRPLFENEKSMKVGQNIK 445

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-K 525
           YD ++L  YG+ ++G   D ML  YVL      H++  +A+ +L Y      E++ +R K
Sbjct: 446 YDMIILQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGARGK 504

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           +   +  +    V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +E 
Sbjct: 505 NQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIEMPLVPVLVNIES 564

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK- 644
            G+ +D + LKQ S   +  L  +E+ IY+++GE FN+SS KQ+G++LF KLK    AK 
Sbjct: 565 NGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGETFNISSAKQVGEVLFDKLKIVEKAKK 624

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQ+ T+ + L+      + II  ILE+R L K+ STY D+LP  IN RT R+HT ++
Sbjct: 625 TKTGQYVTSEEVLQSYRSKHD-IIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFN 683

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++ 
Sbjct: 684 QAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSED 743

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             +   F +  DIH   AA+I+ ++I  V+  MRR AKT NF IIYGIS F LA ++ + 
Sbjct: 744 KNMIDAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVS 803

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA + I  YF  +P + EY++K+    R+NGYVETIF R+    +INS    +R   E
Sbjct: 804 RQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNGVVRGYAE 863

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AINAPIQGSAADI + AM  +++  + + L  KM+LQ+HDEL F VPE E     +I+
Sbjct: 864 RNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKELVQKIV 923

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +  ME+A     ++ VPLK +    NNW
Sbjct: 924 IEEMEQAY----HMHVPLKADCGWGNNW 947


>gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44]
 gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44]
          Length = 937

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 341/984 (34%), Positives = 534/984 (54%), Gaps = 59/984 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A P L R   G P +   G    +  ++Q  RK+  A +
Sbjct: 1   MSNSKTLVLVDGSSYLYRAYHAMPDL-RAIPGDPASPATGAIRGMVNMMQALRKDVQADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
              +FD    TFR+E+Y +YKA R  +P+ L  Q+  +    Q  G   + + G EADD+
Sbjct: 60  AVCVFDASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVQLLGWKVVAVPGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT    A  +G  V + S DKDL QLV+    + DT+  +K D+  V  ++G+PP  M+
Sbjct: 120 IATLAQTAAAQGIQVIVSSGDKDLSQLVNEHVTIIDTMNGKKRDVAGVTAEFGVPPALMI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GD++DN+PG+  +G KTAA  L+E+G+L+N++  A+ IK     +N+ +   + 
Sbjct: 180 DYQALVGDTVDNVPGVTKVGPKTAAKWLEEHGSLDNLIARAADIKGVAG-QNLRDAIASG 238

Query: 241 RL--SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +L  SR+LV ++T              DC+    IS L  L+   L        + D+A 
Sbjct: 239 QLALSRQLVTMKT--------------DCDLSSYISGLPQLDAITLA-------EPDSAA 277

Query: 299 IEPVVLDINTTENKGIA---IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           + P          KG+A        +           + S Q    +++           
Sbjct: 278 LAPFYEKYGF---KGLARTLGAAAAEAKAAKPGKAAKTDSAQGGLFDADDAAATEVAVTA 334

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q+       +  YT I++   + +W+ K+      +    TD++D   ++ + I+ S   
Sbjct: 335 QQ------RDVLYTTILSEAQLDEWLAKISAAELTALDTETDSLDEMVARIVGISFSVA- 387

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    E  +I L  H   D   +  +   +L+ LK + E+    K+G ++KYD+ V
Sbjct: 388 -------VGEAAYIPLR-HEGMDVPEQLDMDM-VLARLKPWLEDAGKKKLGQHVKYDQHV 438

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
              +GI++RG+  D ML SYVL++ R  H++ S+A + +S +    +++    K+ IP  
Sbjct: 439 FANHGITVRGYAHDTMLQSYVLEADRP-HNLTSLALRHVSRSGISYEDLCGKGKNQIPFA 497

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590
           ++S  +   ++ E+S+  L +   L P++     LLH+YE L+    + + ++E  G+ I
Sbjct: 498 QVSVDKAAAYSCEDSDQTLDVHNTLWPRIQAHAGLLHIYE-LEMQTSEALFRIERNGVSI 556

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L + S ++   +L LEE  Y+++G+ FNLSSPKQLG+I F KL  P   KT TG  
Sbjct: 557 DAGELARQSNDLGARILKLEEEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGAR 616

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++   D P+   +LE R LSK+K TY D L         RVHT Y+ A  +T
Sbjct: 617 STDEEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVT 675

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++T  G+++R AF++P  K + SADYSQIELRI+AH++    L   
Sbjct: 676 GRLSSNDPNLQNIPVRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSA 735

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N LD+HR  AAE+FGV++++VS + RR+AK INF +IYG+S F LA  L I    AA 
Sbjct: 736 FKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAA 795

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI +YF R+PG+  Y+++T       GYVET+FGRR+   EIN      +   ERAAINA
Sbjct: 796 YIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAAINA 855

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AAD+ ++AM++V   L+  K    +++Q+HDELVFE+PE    +A   +   +  
Sbjct: 856 PMQGTAADLIKKAMVAVQARLDTEKPEVLVIMQVHDELVFELPE----SARDWVQAEIPA 911

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                 +L VPL   I   ++W++
Sbjct: 912 IMAGVADLSVPLLAEIGFGSSWEK 935


>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
 gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
          Length = 928

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 350/992 (35%), Positives = 548/992 (55%), Gaps = 84/992 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M++   LFL+D  + IYRA+YA    P ++ K  GL  +AI GF N L ++L        
Sbjct: 1   MEQAKKLFLLDAYALIYRAYYAFIKNPRVNSK--GLNTSAILGFVNTLEEVLNKEN---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR+E + DYKA R   PE +   +P+++   +A+ IP +E+QG+EA
Sbjct: 55  PTHIGIAFDPAGPTFRHEAFEDYKAQREATPEDIKIAVPIIKDIIRAYKIPILEVQGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173
           DD+I T    A ++  +  +++ DKD  QLV     +Y     +K    +  + VI+K+ 
Sbjct: 115 DDVIGTLAKQANEKEISTYMMTPDKDYAQLVDKYVYMYRPKYGDKEFEILGPQEVIEKYD 174

Query: 174 IPPE-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKR 229
           +  + +++ L  L GDS DNIPG PG+G KTA  LL+E+G++EN++ N  ++K   +KK 
Sbjct: 175 LENQSQIIDLLGLMGDSADNIPGCPGVGIKTAQKLLKEFGSIENLIENTDKLKGALKKKV 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
             NI    E  + S+ L  ++ DVPI + L+ L+ E+ +  ++    + LEF  L+ RV 
Sbjct: 235 EANI----EQIKFSKFLATIKVDVPIKLELDKLVREEMDKDKVREIFEELEFRTLLERV- 289

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
                           I  T++  + I+T       I+   FS  +  T     E T  +
Sbjct: 290 ----------------IKETDSPTLQIQT-----GPIQGDLFSEFATNTQDTQKEST--E 326

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
           + LE          N   Y  I N  DI++  +KL      +    T  ++A  ++ + I
Sbjct: 327 IALEN---------NKKEYHLIDNEDDIEELSKKLMPFKEIALDTETTGLEAMEAEIVGI 377

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           + S          K E  +I       +        TK+ L+ +K   EN+  LKIG NI
Sbjct: 378 SFSVK--------KNEAYYIPFPKDQEE--------TKKRLNIIKPLLENKKSLKIGQNI 421

Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSR 524
           KYD L+L  YGI + G   D M+  YV+      H++  +A+ +L++        I    
Sbjct: 422 KYDLLILKNYGIEVVGKLFDTMIAHYVVQP-ELRHNMDYLAEIYLNHITIPIEDLIGPKG 480

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K+   + ++S   V  +A E++++  QL   +   L   +   ++  ++ P++ V++ ME
Sbjct: 481 KNQKSMRELSPEDVYIYACEDADITFQLKNAIEKDLKENQAEELFYTIEMPLVPVLTDME 540

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
            TG+ +D+  LK +S + +  L+++EE I+ L+   FN+SSPKQ+G+ILF KLK    AK
Sbjct: 541 YTGVLLDKKALKSLSKDFTDRLITIEEEIHKLADNDFNVSSPKQVGEILFDKLKIDEKAK 600

Query: 645 -TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            TKTGQ+ T+ + L  ++  D +PI++ IL++R L K+ STY D+LP  INK+T ++HT 
Sbjct: 601 KTKTGQYVTSEEVL--LSYKDKHPIVEKILDYRGLKKLLSTYVDALPKLINKKTGKIHTS 658

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++   T TGRL+S  PNLQNIPI+   G++IR+AFI        SADYSQIELRI+AH++
Sbjct: 659 FNQTVTATGRLSSSNPNLQNIPIRDSDGKEIRKAFIPDQDSLFFSADYSQIELRIMAHLS 718

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               + + F +  DIH   AA+++  +I  ++   RR AKT NF IIYGIS F LA +++
Sbjct: 719 HDNNMMEAFLHGDDIHAATAAKVYKQDINTITSDQRRKAKTANFGIIYGISVFGLAERMQ 778

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R EA + I+ YF  +P + EY++++    R+ GYVETIF R+ +  +INS  + +R  
Sbjct: 779 VERKEAKELIEGYFETYPQVKEYMDQSIVEAREKGYVETIFNRKRYLPDINSRNAVVRGF 838

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
           +ER AINAPIQGSAADI + AM+++HK  ++ KL +KM+LQ+HDEL F V   E     Q
Sbjct: 839 SERNAINAPIQGSAADIIKVAMVNIHKRFKEEKLLSKMILQVHDELNFTVIPSEKEKVQQ 898

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I++  ME A      L VPLK +     NW E
Sbjct: 899 IVIQEMENAY----KLSVPLKADFGWGENWLE 926


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 340/989 (34%), Positives = 524/989 (52%), Gaps = 134/989 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   L LVDG+S I+RAF+A P L  + +G+  NA+ GF  ML    Q +R+     +  
Sbjct: 4   KTARLLLVDGNSVIHRAFHALPPLQTR-EGIRTNAVYGFATML----QKAREMFKPDYII 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD+  VTFRNE+Y +YK  RP+    L PQ  LV+    A+ + + E++G+EADD+I 
Sbjct: 59  VAFDHSKVTFRNELYDEYKGTRPETDPELRPQFALVKRLLAAWNLASCEVEGYEADDLIG 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178
           T +      G  V I++ D+D +QLV     +        + E ID E + K +G+ PE+
Sbjct: 119 TLSRQGAATGLEVLILTGDRDALQLVGERVKVLLMRRGLSQVEVIDREAIKKNYGLEPEQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++AL GD+ DNIPG+PG+G KTA  L+++YG+LE +L ++  IK ++  EN++ +A+
Sbjct: 179 LIDVKALMGDASDNIPGVPGVGEKTAVQLVRQYGDLEGVLAHSGEIKGRRVAENLVTFAD 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            ARL+R+L  +    P+T+ L     +  +   +++  K LEF  L+  V          
Sbjct: 239 QARLARRLATIDCQAPVTLDLAGCCNQSPDYEAVLALYKELEFHSLVKDV---------- 288

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                  +   E +G                     S +T+ +     P  L L+ L++L
Sbjct: 289 -------LRAMEQEG------------------KKASQETTAVRGLSLPDPLTLDSLEEL 323

Query: 359 SQYP--------------INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
           ++                +NN SY +         W   +  +G+A  +           
Sbjct: 324 AELVARLVGKTDVALELILNNPSYLEAAAVAVGLAWEDGVAVLGTAGIE----------- 372

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
            P A+A  TL+       +V  IF D           K  L          +F N     
Sbjct: 373 -PAALA-GTLE----PLLRVNPIFHD----------AKRALV---------WFSNAG--- 404

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
                          G++  G  D M+  Y+L+   S HD+  +  + L+    E     
Sbjct: 405 --------------AGVADPG-GDTMVAGYLLNPSASRHDLPELCLEHLNLALVE----- 444

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
                     DS  Q  A   + VI  L   L  KL V  + ++Y R++ P+  V+  ME
Sbjct: 445 ---------GDSP-QLAAARRAAVIRLLHRELASKLQVAGMENLYRRVELPLTRVLGAME 494

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G+ ++ + L  +  E+   L +L E IY+L+GE+FNL+SPKQL  ILF KL  P   +
Sbjct: 495 SYGVAVNMETLDLMGIELEGGLAALTEAIYELAGEEFNLNSPKQLAVILFEKLGLPPVKR 554

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTG + T A  LE++ C  +PI   ++E+RQL+K+KSTY D L   +N RT  +HT ++
Sbjct: 555 TKTG-FSTDAAVLEELAC-RHPIAAKLVEYRQLAKLKSTYVDGLKPLVNPRTGSLHTSFN 612

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAK 763
              T TGRL+S EPNLQNIP++ +LG+++R+AF+   P + L++ADYSQIELRILAHI+ 
Sbjct: 613 QTVTATGRLSSSEPNLQNIPVRLELGRRLRKAFVPHGPGRLLLAADYSQIELRILAHISG 672

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              +   F    DIH   AAE+FGV + +V+P MRR AK +NF I+YGIS + L+  L I
Sbjct: 673 DEAMIAAFRRGEDIHARTAAEVFGVPLGEVTPAMRRSAKAVNFGIVYGISDYGLSRDLGI 732

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            RSEA DYI+RYF R+ G+  Y+E+     RQ GYV T+ GRR +  ++ S   ++R+  
Sbjct: 733 SRSEAHDYIERYFRRYRGVKAYLEEIVARARQEGYVTTLLGRRRYLPDLFSSNRNVRSFG 792

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N PIQG+AADI + AM+ + + LE    A +M+LQ+HDEL+F+VP++++   + +
Sbjct: 793 ERTAMNTPIQGTAADIIKMAMVKIFRLLEAQYPAARMILQVHDELIFDVPDDDLPAVAGL 852

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +  +ME      + L+VPL+V++K   NW
Sbjct: 853 VKDTMEHT----LELQVPLQVDLKAGPNW 877


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 339/985 (34%), Positives = 540/985 (54%), Gaps = 66/985 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           ++  LFL+D  + I+R +YA     R   DG   +AI GF N L +L++  R     SH 
Sbjct: 16  QDKRLFLIDAYAMIFRGYYALIRAPRMTSDGRDTSAIFGFTNSLIELIRRER----PSHL 71

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD    + R   + +YKANR + PE +   +P +    +A  +P + ++G+EADD+I
Sbjct: 72  AVVFDVGQASVRTVDFAEYKANRNETPEAIQLAIPYIHRILKAMHVPILGVEGYEADDVI 131

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEK---IDIEHVIKKWGIP-P 176
            T    AEKEG+   +++ DKD  QLV+    +Y   +K  +   + ++ V +K+ I  P
Sbjct: 132 GTIACKAEKEGYTTFMVTPDKDFAQLVTDKIKIYKPGLKGAEFTILGVDEVKEKYEIEDP 191

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++   A+ GDS+DNIPG+ G+G KTA   L+EYGN+EN+L N   IK  K RE +   
Sbjct: 192 KQVIDFLAMMGDSVDNIPGLDGVGEKTAKKFLKEYGNIENLLANTHEIK-GKLREKVEAS 250

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           AE   LS+KL  +  D PI    E   LE     ++      +EF +L   +   +    
Sbjct: 251 AERGILSKKLATIICDAPIEFHQEQYDLETPEWEKVKEVFDEIEFRRLYENLYRAFAPAT 310

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +PV      + N            ++++   F++  +      ++ T +        
Sbjct: 311 ELSQPVQQKSAASANP-----------SSMQLDLFANFEELDHATRTKSTFE-------- 351

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                  +ND   + ++T   Q+ +   L +  + +F   T T++   ++ + ++ S   
Sbjct: 352 -------DNDVLYQYIDTPKAQKMLAWNLMSQKAVAFDTETTTLNEMDAELVGLSFSYR- 403

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  K    +I LS   S+          + L   ++FFE E   K+ HN+K+D  +
Sbjct: 404 -------KGLAYYIPLSEDRSE--------AIQTLEIFREFFEKEDVSKVAHNLKFDYKI 448

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPI 530
           L +YG S++G   D M+  Y+L+     H I  +++ +L+Y        I K  K+ +  
Sbjct: 449 LQQYGFSLKGLLFDTMIAHYLLNPD-GKHVIDYLSEIYLNYKPVALESLIGKKGKNQLTF 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  +   +A E++++  QL+ +  P+L  E L  ++ +++ P++ V+++ME+ G+ +
Sbjct: 508 RSLTVEEQTNYAAEDADITWQLYEVFAPQLKKENLEDLFYKVEMPLLRVLAKMELEGVAL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D+  L Q S ++  +L  LE  I++L+  +FN++SP+QLG+ILF KLK  P   KTKTGQ
Sbjct: 568 DEKWLAQESIDLENDLRGLEAKIFELADVEFNVNSPRQLGEILFEKLKLDPKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  T++D+ Q     + IIK ILE+R   K+KSTY D+LP  I+K   RVHT +S  +  
Sbjct: 628 Y-ATSEDVLQKLSAKHDIIKYILEYRTYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS+ PNLQNIPI+T  GQ+IR AF++   KK+ISADYSQIELR++A I+    +  
Sbjct: 687 TGRLASVNPNLQNIPIRTLRGQQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENMIL 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+N  DIH   AA +F + +E+V+   R  AKT+NF IIYG   F LA Q  + R+EA 
Sbjct: 747 AFQNGEDIHVSTAARLFDIPLEEVTKTQRGQAKTVNFGIIYGQGAFALAEQTGLSRTEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I+ YF  +P + +Y+ +     ++ GYVETI  R+ H  +INS    ++   ER A+N
Sbjct: 807 QMIESYFENYPRLKKYMGEQVQKAQELGYVETILNRKRHLKDINSANFVVKAHAERNAVN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAAD+ + AMI + + L +  L TKMLLQ+HDEL+FE P+EE+    ++I   ME
Sbjct: 867 APIQGSAADVIKLAMIKIDQKLSELNLKTKMLLQVHDELLFEAPQEEVEMVMKLIKTEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A       +VPL V + V +NW E
Sbjct: 927 SA----FETKVPLLVEVGVGDNWLE 947


>gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
 gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
          Length = 946

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 353/992 (35%), Positives = 550/992 (55%), Gaps = 75/992 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           LFL+D  + IYRA +A     R    G+   A+ GF N L ++L   +     +H  V F
Sbjct: 4   LFLLDAMALIYRAHFAFSKNPRVTSTGISTGAVFGFTNSLLEILLKEK----PTHIGVAF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++ + +YKANR + PE +   +P +    +   IP + + G+EADDI+ T++
Sbjct: 60  DLQGPTFRHDNFTEYKANRQEQPEDISVAIPYIYRLLEGMNIPILGVPGYEADDIVGTFS 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIPP-EKMV 180
            IA   GF V +++ DKD MQLV+    LY         E  DI  V+ K+ I   +++ 
Sbjct: 120 KIAPPLGFDVYMMTMDKDYMQLVNEHVFLYRPAYMGNDVEIYDINKVLAKFNIKEVDQVR 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GD++DNIPGIPGIG KTA  L+ ++G++EN++ NA ++K  K++EN++ +A   
Sbjct: 180 DILGLQGDTVDNIPGIPGIGEKTAQKLIADFGSVENLIKNADQLK-GKQKENVINFAAQG 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS++L  +  +VPI    E L +++ N   L      LEF  L  R+            
Sbjct: 239 LLSKELATIHCEVPIEFDEEALRVKEYNIEALDQLFDELEFRTLKKRLFG---------- 288

Query: 301 PVVLDINTTENKGIAIETEIDRDT--TIKTSQFSSLSDQT-SKINSEQTPQKLFLERLQK 357
                     N   A ETE   +T  T K++  SS        + + +T  + F E+ + 
Sbjct: 289 ----------NSSSASETEKKMETKATKKSAAVSSTGQMGLFGMEAAETITEEFDEKGE- 337

Query: 358 LSQYPINNDSYTKIVN---TKDIQQWVQKLETI----GSASFKIITDTMDAFHSKPIAIA 410
            S+  I  D+   +++     D +  + +L  +     S  F   T +++A  ++ + +A
Sbjct: 338 -SKETIVRDTIDTVLHDYYVVDTEAEIVRLTNLLLLQESFCFDTETTSLNALEAELVGLA 396

Query: 411 ISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           IS         F+  E  +I  +    Q        T+ IL  L+  FE     K+G N+
Sbjct: 397 IS---------FRAKEAYYIPFTSDQIQ--------TQRILDLLQPAFEKSSITKVGQNL 439

Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSR 524
           KYD LVL +Y  ++ G   D ML  Y+L+     H + ++A+ +L+YT     + I K  
Sbjct: 440 KYDLLVLKKYNFAIAGPLFDTMLAHYLLEP-EMRHGMDTLAEVYLNYTPVSIEQLIGKKG 498

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
                +  +    ++E+A E++++  QL+    P +  + L  ++  ++ P+ +V++ ME
Sbjct: 499 AKQGTMRDVEIEAIKEYAAEDADITFQLYKFFSPLVKDQNLNPLFNEVEMPLSEVLADME 558

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGA 643
           + G++ID   L + S+ +   + ++E+ IY+ +G +FN+SSPKQLG+ILF KLK  P+  
Sbjct: 559 LEGVKIDTQALSEFSSLLQTEITAVEKEIYEHAGVQFNISSPKQLGEILFDKLKLDPNAK 618

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTGQ+ T    L +++  D+PI+ NIL++R+  K+KSTY D+LP  + K   RVHT +
Sbjct: 619 KTKTGQYATGEDVLTKLDS-DHPILANILDYREFQKLKSTYVDALPLLLGK-DGRVHTSF 676

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIA 762
           + A   TGRL+S  PNLQNIPI+TD G++IRRAF++     +I SADYSQIELRI+A  +
Sbjct: 677 NQAVAATGRLSSTNPNLQNIPIRTDRGKEIRRAFVARDNDHVILSADYSQIELRIMAAFS 736

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   +   F   +DIH   A+++F V IE V+  MRR AK +NF IIYGIS F L+ +L 
Sbjct: 737 KDESMLNAFRKGVDIHSTTASKVFKVPIEDVTADMRRKAKMVNFGIIYGISAFGLSQRLS 796

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR EAA+ I  YF  FP +  Y++   N  R+  YVETI GRR    +INS   ++R  
Sbjct: 797 IPRKEAAEIITAYFTEFPAVKAYMDACVNSAREVEYVETILGRRRFLRDINSRNMTMRGF 856

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAPIQGSAAD+ + AMI +H  ++   L +KM+LQ+HDEL+F+  ++EI     
Sbjct: 857 AERNAINAPIQGSAADMIKVAMIRIHDWMKKENLKSKMVLQVHDELLFDAHKDEIDLLKT 916

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   M++A    I L VP++V + +  NW E
Sbjct: 917 QVEIFMKEA----IALDVPMEVGMGIGENWLE 944


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 351/987 (35%), Positives = 531/987 (53%), Gaps = 93/987 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA+Y+ P L+    G    A+ G  NML  LL+  +     +  AV
Sbjct: 6   ENPLVLVDGSSYLYRAYYSPPHLTNSK-GEATGAVYGVINMLRSLLKQYK----PTQMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           IFD    TFRN++Y DYKA RP +P+ L  Q+ PL R+  +A G+P + I G EADD+I 
Sbjct: 61  IFDAKGKTFRNDMYADYKAQRPPMPDDLRTQIEPLHRI-IRAMGLPLVCISGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  A KEG +V I + DKD+ QLV     L +T+    +  + V +K+G+ PE ++ L
Sbjct: 120 TISTQASKEGRSVLISTGDKDMAQLVDDNVTLINTMTNTIMGPDEVTEKFGVGPELIIDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G ++ IL    ++ +      K     + E+
Sbjct: 180 LALQGDKADNIPGLPGVGEKTAVAMLTGAGGIDKILAAPEKMPELGFRGSKTMPAKLAEH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +   LS  L  ++ DV +    + L +E  N   LI     +EF + +  V        
Sbjct: 240 RDILELSYALATIKLDVELEQDWQDLTIEPANRDELIKCFAEMEFKRWLAEV-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                  LD  T   K        D  TT                + E   Q +  E   
Sbjct: 292 -------LDNKTGSGK--------DEKTT----------------DEEVIKQDIKTE--- 317

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      YT I   +++  W+ KL      +    T +++   +K + I       
Sbjct: 318 -----------YTTIYTHEELDLWIDKLTNADLIAIDTETTSLNYMEAKLVGI------- 359

Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               SF +E     ++ L  H   D+  K     E L+ LK   EN    K+G N+KYD 
Sbjct: 360 ----SFAIEAGKAAYLPLG-HDYLDAP-KQLDQAEALAKLKPLLENPELKKVGQNLKYDI 413

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
            +    GI ++G   D ML SYV +S  + H++  +A K+L +     +EI       + 
Sbjct: 414 SIFANVGIKLQGIAFDTMLESYVFNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQLT 473

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588
            ++I       +A E++++ L+L   L P+L  E +L  V+  ++ P+I ++S +E  G+
Sbjct: 474 FNQIDLEIAAPYAAEDADITLRLHQHLWPRLEKEPQLAAVFTDIELPLIQILSDIERGGV 533

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  +L Q S E+++ +  LE+  ++++GEKFNLSSPKQL  + F KL +P   KT  G
Sbjct: 534 LIDGMMLGQQSEELARTIDELEQKAFEIAGEKFNLSSPKQLQALFFEKLGYPIIKKTPKG 593

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA+D+      D P+ K IL+ R L+K+KSTY D LP  +N ++ R+HT Y  A+ 
Sbjct: 594 A-PSTAEDVLVELALDYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQSGRIHTSYHQANA 652

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIPI+T+ G++IR+AFI+   KK+++ADYSQIELRI+AH+++   L 
Sbjct: 653 ATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAREGKKVLAADYSQIELRIMAHLSQDKGLL 712

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIHR  AAE+F V+ ++V+ + RR AK +NF +IYG+S F LA QL I R EA
Sbjct: 713 TAFAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDISRPEA 772

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF R+PG+ +Y+E+T+      GYV T++GRR++   I    +  R   ERAAI
Sbjct: 773 QKYIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAI 832

Query: 889 NAPIQGSAADITRRAMISV-HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI ++AMI++ H    + +   +M++Q+HDELVFEV  ++     + +   
Sbjct: 833 NAPMQGTAADIIKKAMINIAHWIATETRGEIEMIMQVHDELVFEVDSDKAEEMREKVCQL 892

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M  A    ++L V L     + +NW++
Sbjct: 893 MADA----VSLDVELLAEAGIGDNWEQ 915


>gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
 gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
          Length = 939

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 355/1003 (35%), Positives = 541/1003 (53%), Gaps = 95/1003 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56
           M     L LVDGSS++YRA++A   + R++    DG P  A+ G  NML +L    R + 
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHA---MLRQNLTAPDGAPTGALYGVLNMLRRL----RADY 53

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEI 112
              + AV+FD     FR++++ +YKA RP +P+ L PQ   LP LVRL     G P + I
Sbjct: 54  PHDYCAVVFDAKGKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLT----GWPVLVI 109

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
              EADD+I T        G  V + + DKD+ QLV+ +  L +T+  E +DIE V +K+
Sbjct: 110 GQVEADDVIGTLAKQGVGHGLQVIVSTGDKDMAQLVNESVTLVNTMSGETLDIEGVKEKF 169

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P+++    ALTGD +DN+PG+   G KTA   L+ YG+L+ ++ +A  IK  K  EN
Sbjct: 170 GVRPDQIRDYLALTGDKVDNVPGVEKCGPKTAEKWLEAYGSLQGVMEHALEIK-GKVGEN 228

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLIN 286
           +        LS  LV ++TDV +     H  L D         P+      A++F +   
Sbjct: 229 LRAALPRLPLSYDLVTIKTDVDL-----HAELSDGLESLRRTTPKWAQL--AVDFKRWGF 281

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           R   T+  +A +       ++   + G++            +      +   +++ SE+ 
Sbjct: 282 R---TWLKEAES------RMHEAADGGLS-----------GSDAIGGKAAPAAEMPSERL 321

Query: 347 PQKLFL-ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           P+K    E+L            Y  +         + KL           T ++DA ++ 
Sbjct: 322 PEKAVAPEKL-----------DYQAVTTEAQFAALLDKLSQAEKIGIDTETTSLDAMNAS 370

Query: 406 PIAIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
            + I+I+         F+  E ++I   V  S  +  +    + +L  LK   EN    K
Sbjct: 371 LVGISIA---------FQAGEAVYI--PVGHSLTAAPEQLDLQYVLDRLKPHLENSALKK 419

Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEI 520
           IG N+KYD+ V   YGI++ G   D ML SY+++S    H +  ++ +WL     T + +
Sbjct: 420 IGQNLKYDQHVFANYGIALNGIVGDAMLASYIIES-HLGHGLDELSGRWLGLETITYESL 478

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
                  I    ++     E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+
Sbjct: 479 CGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVL 537

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
            +ME  G+QID+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P
Sbjct: 538 FEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIP 597

Query: 641 SGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
           +    KT  G   T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R +R
Sbjct: 598 TKGLKKTAKGGISTNEDVLEQL-APDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKR 656

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y+ A  +TGRLA   PNLQNIPI+T+ G+K+RRAF +PP   ++SADYSQIELRI+
Sbjct: 657 VHTTYAQAVAITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIM 716

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L   F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA
Sbjct: 717 AHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLA 776

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L I    A ++I RYF R+PG+ EY+++ +      GYVET+FGRR++  +I    ++
Sbjct: 777 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNAN 836

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFE 931
           IR   ERAAINAP+QG+A+D+ +RAMI V + L        D  L +K+++Q+HDELV E
Sbjct: 837 IRARAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQVHDELVLE 896

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           VPE E+    + +   M  A +    L VPL   +    NW+E
Sbjct: 897 VPEAELDLVKEKLPQMM--AAVDDGMLDVPLAAEVGAGMNWEE 937


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 346/988 (35%), Positives = 548/988 (55%), Gaps = 57/988 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L    K+  
Sbjct: 8   MNSIDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 61

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 62  PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 121

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E +  E V  K+ I
Sbjct: 122 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDRVFMYRPKHTGGFEVMGTEEVKTKFNI 181

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
              E+++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 182 QTTEQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 240

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++TDVPI + ++ L+ E+ N   L    + LEF  LI+RV     
Sbjct: 241 ETNREMITFSKFLATIKTDVPIQLDMDSLVREEPNEEELRKIFEELEFRTLIDRVLKKGS 300

Query: 294 CDAANIEPV--VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            ++++  P   V D+           +  +    I+   F++ + + + ++         
Sbjct: 301 GNSSSPTPTSPVPDLFAGTLFAQPQTSTPENSAPIQGDLFANFAGEGTGVSENSN----- 355

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQ-QWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
           L RL+ L       D   ++++T+D + + +QKL T    S    T   +   ++ + ++
Sbjct: 356 LTRLEML-------DIDYQLIDTEDKRAEIIQKLLTSEILSIDTETTGTEPMDAELVGMS 408

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S  + +          ++ +     +          +I++  +  FENE  +K+G NIK
Sbjct: 409 FSDAENR--------AYYVPVPAEREE--------VLKIVNEFRPLFENEKSMKVGQNIK 452

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-K 525
           YD ++L  YG+ ++G   D ML  YVL      H++  +A+ +L Y      E++ +R K
Sbjct: 453 YDMIILQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGARGK 511

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           +   +  +    V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +E 
Sbjct: 512 NQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIEMPLVPVLVNIES 571

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK- 644
            G+ +D + LKQ S   +  L  +E+ IY+++GE FN+SS KQ+G++LF KLK    AK 
Sbjct: 572 NGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGETFNISSAKQVGEVLFDKLKIVEKAKK 631

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQ+ T+ + L+      + II  ILE+R L K+ STY D+LP  IN RT R+HT ++
Sbjct: 632 TKTGQYVTSEEVLQSYRSKHD-IIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFN 690

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++ 
Sbjct: 691 QAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSED 750

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             +   F +  DIH   AA+I+ ++I  V+  MRR AKT NF IIYGIS F LA ++ + 
Sbjct: 751 KNMIDAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVS 810

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA + I  YF  +P + EY++K+    R+NGYVETIF R+    +INS    +R   E
Sbjct: 811 RQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNGVVRGYAE 870

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AINAPIQGSAADI + AM  +++  + + L  KM+LQ+HDEL F VPE E     +I+
Sbjct: 871 RNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKELVQKIV 930

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +  ME+A      + VPLK +    NNW
Sbjct: 931 IEEMEQA----YRMYVPLKADCGWGNNW 954


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 354/1001 (35%), Positives = 553/1001 (55%), Gaps = 78/1001 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   + LFL+D  + IYR++YA    P ++ K  G   +AI GF N L ++L    K+  
Sbjct: 1   MNSTDKLFLLDAYALIYRSYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    +   E + I+ +  K+ I
Sbjct: 115 DDVIGTLATEAGRQGIITYMMTPDKDYGQLVSDNVFMYRPKHSGGFEVMGIDEIKAKFNI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
              E+++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 RSTEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVAEFGSIENLLAHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288
               E    S+ L  ++ DVPI + +  L+ E+ +  +L    + LEF  LI+RV     
Sbjct: 234 EANREMITFSKFLATIKVDVPIKLDMTTLVREEPDEEKLRKIFEELEFRTLIDRVLKKSG 293

Query: 289 --------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
                   + + D  A  +    +D  T EN G            ++   F++ +D  + 
Sbjct: 294 APLSSSSNSVSPDLYAGTLFARPVDSPTPENNG-----------PVQGDLFANFADNGTD 342

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
            N+E +           L+   + +  Y  I   +   + +QKL T    S    T   +
Sbjct: 343 -NAENS----------NLTHLEMLDVDYQLIDTEEKRSEIIQKLLTTEILSIDTETTGTE 391

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
              ++ + ++ S  + +   ++ V        V  ++D   K      I++  +  +ENE
Sbjct: 392 PMEAELVGMSFSNAENR---AYYV-------PVPANRDEALK------IVNEFRPLYENE 435

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-- 517
           + +K+G NIKYD +VL  YG+ ++G   D ML  YVL      H++  +A+ +L Y    
Sbjct: 436 NSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLRYRTIH 494

Query: 518 -KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
             E++ SR K+   +  +    V  +A E+++V L+L  +L  +L  +   H++  ++ P
Sbjct: 495 IDELIGSRGKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAEHLFYEIEMP 554

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILF 634
           ++ V+  +E  G++ID + LKQ S   +  L  +E+ IY L+ GE FN++SPKQ+G++LF
Sbjct: 555 LVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALANGETFNIASPKQVGEVLF 614

Query: 635 TKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            KLK    AK TKTGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN
Sbjct: 615 DKLKIVEKAKKTKTGQYVTSEEVLESLR-NKHAIIGKILEYRGLKKLLSTYIDALPQLIN 673

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            RT R+HT ++ A T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQI
Sbjct: 674 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQI 733

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+AH+++   +   F +  DIH   AA+I+ V+I +V+  MRR AKT NF IIYGIS
Sbjct: 734 ELRIMAHLSQDRNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGIS 793

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F LA ++ + R EA + I  YF  +P I EY++K+    R+NGYVETIF R+    +IN
Sbjct: 794 VFGLAERMNVSRQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRKRFLPDIN 853

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S  + +R   ER AINAPIQGSAADI + AM  +++ ++ + L  KM+LQ+HDEL F VP
Sbjct: 854 SRNAVVRGYAERNAINAPIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVP 913

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E E     +I++  ME+A      + VPLK +     NW E
Sbjct: 914 EAEKEIIQKIVIEEMERAY----RMLVPLKADFGWGKNWLE 950


>gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319]
 gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319]
          Length = 920

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 339/986 (34%), Positives = 548/986 (55%), Gaps = 89/986 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + I+R++YA   +P ++ K  GL  +AI GFCN L ++L   +     +H AV
Sbjct: 4   LFLLDAYALIFRSYYALIRSPRINSK--GLNTSAIMGFCNTLNEVLTKEK----PTHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+   TFR++ YP YKA R + PE +   +PL++   +A  IP +++ GFEADDII T
Sbjct: 58  AFDH-GKTFRHDAYPQYKAQREETPEDIKLSVPLIKQILEALHIPILQVDGFEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175
                  +G    +++ DKD  QL+ P   +        Y+T+ E++++      K+GIP
Sbjct: 117 VATRFGADGIETFMLTPDKDYGQLIGPNVYMYRPKHGGGYETLGEKEVE-----SKYGIP 171

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ + AL GD+ DN PG PG+G KTAA L+ ++G+++N+L +   IK  K RE + 
Sbjct: 172 TPAQVIDILALMGDTADNFPGCPGVGEKTAAKLISQFGSIDNMLAHTDEIK-GKLREKVE 230

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E  ++S+ L  +RTDVPI + L+ + ++  +  +L +  + LEF  LIN+       
Sbjct: 231 AAVEDIKISKFLATIRTDVPIQLELDDMKVQQPDEEKLRAIFEELEFKTLINKF------ 284

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                      +N  + K   +E ++D         F+  +  T         +K   E 
Sbjct: 285 -----------LNKDKEKSKVVENQLDL--------FAEFTPDTP-----SEAKKASFES 320

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L K +Q+     +Y  I N  D+ +  +   T  + S    T + DA  ++ + ++ S  
Sbjct: 321 L-KTTQH-----NYQLIDNEADLHRLCELFLTKKTLSLDTETTSTDAISAELVGLSFSVE 374

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           ++        E  ++ +  +  +       L +  ++  K  +ENE  LK+G NIKYD  
Sbjct: 375 EK--------EAYYVPIPENREE------ALKR--VAIFKPVYENESILKVGQNIKYDYE 418

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIP 529
           VL  YG+ ++G   D M+  Y++      H++  +A+  L Y     +E+L S+ K    
Sbjct: 419 VLSNYGVKLKGAMFDTMIAHYLIQP-ELRHNMDYMAETLLGYQTIHIEELLGSKGKKQKN 477

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +S + + E+A E++++ L+L  +L PKL    +  ++  ++ P++ V++ ME+TG++
Sbjct: 478 MRDLSPTDIYEYAAEDADITLRLKNVLAPKLKELNVEELFWSIEMPLVRVLADMELTGVR 537

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTG 648
           ID + LK+ S   ++ +   E  I+  +GE+FN+SSPKQ+GDILF K++      KTKTG
Sbjct: 538 IDTEALKETSKIFTERMRQYEVKIFKEAGEEFNISSPKQVGDILFGKMQILDKPKKTKTG 597

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + L+ I    +PI++NIL +R + K+ STY ++LP  IN RT  +HT ++ A T
Sbjct: 598 QYVTSEEVLQSIES-KHPIVRNILNYRGMKKLLSTYVEALPKLINSRTGHIHTSFNQALT 656

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH+++   + 
Sbjct: 657 ATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDNMM 716

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIHR  AA+I+   ++ V+   R+ AK  NF IIYGI+ F LA ++ IP +EA
Sbjct: 717 EAFREGYDIHRATAAKIWHEALDDVTDAQRKKAKQANFGIIYGITTFGLAQRMEIPNNEA 776

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
              I+ YF  FP +  Y+E  K   R  GY ET+F RR +   INS   +IR  +ER AI
Sbjct: 777 RALIQDYFRTFPKVQAYMEHAKELARSKGYAETLFHRRRYLPNINSRNGTIRGFDERNAI 836

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+ ADI + AM+ +    ++  + +KM+LQ+HDEL F V  +E     +I++  M
Sbjct: 837 NAPIQGTEADIIKVAMVRIWNRFKEEGIRSKMILQVHDELNFSVYPDEREKVEKIVLEEM 896

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           + A      L VPL  +     NW E
Sbjct: 897 QNA----YPLNVPLIADAGWGKNWLE 918


>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
 gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
          Length = 920

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 340/981 (34%), Positives = 547/981 (55%), Gaps = 79/981 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA   +P ++ K  GL  +A+ GFCN L ++L   +     +H  V
Sbjct: 4   LFLIDAYALIYRSYYAFIKSPRINSK--GLNTSAVMGFCNTLNEVLTKEK----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+   TFR++ +P+YKA R + PE +   +PL++   +A  IP +++ GFEADDII T
Sbjct: 58  AFDH-GKTFRHDAFPEYKAQREETPEDIKLSVPLIKQVLEAMHIPILQVYGFEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PEKM 179
                  +G    +++ DKD  QL+ P   +Y        +I   + V +K+GI  P ++
Sbjct: 117 IATRFGADGIDTFMLTPDKDYGQLIGPNVFMYRPRHGGGYEILGEKEVGEKYGISTPAQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTAA L+ ++G+++N+L +   IK  K RE +    E 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNMLQHTDEIK-GKLREKVENAVED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVP+ + L+ L +E  +  +L +  + LEF  LIN+            
Sbjct: 236 IKMSKFLATIRTDVPMELDLDELKVEQPDETKLRAIFEELEFKTLINKF----------- 284

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                 +N  E+K                +Q    ++ T+  N    P+    E + K +
Sbjct: 285 ------LNKDESK-----------PKTDNNQLDLFAENTT--NESDEPKNAKFESI-KTT 324

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q+      Y  + N ++++Q      T    S    T + DA  ++ + ++ S  ++K  
Sbjct: 325 QH-----EYKLVENEEELRQLCDFFITKEFVSIDTETTSTDAISAELVGLSFSVEEKK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +F V       +V  + +   K      I+   K  +E++  +KIG NIKYD  VL RY
Sbjct: 378 -AFYV-------AVPANYEEALK------IVQIFKPLYESDKIMKIGQNIKYDYEVLTRY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDKIS 534
           G++++G   D M+  Y++      H++  +A+  LSY     +E+L  + K    +  +S
Sbjct: 424 GVTLQGKMFDTMIAHYLIQP-ELHHNMDYMAETLLSYQTIHIEELLGPKGKKQKNMRDLS 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + + E+A E++++ L+L  +L P+L    +  ++  ++ P++ V++ ME+ G+ +D + 
Sbjct: 483 PTDIYEYAAEDADITLRLKNVLEPRLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEA 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653
           L+  S   ++ +   E+ IY  +GE+FN+SSPKQ+GDILF KL+      KTKTGQ+ T+
Sbjct: 543 LQDTSKIFTERMKQYEQEIYKEAGEEFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTS 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+ +    +PI++NIL +R + K+ STY D+LP  IN RT  +HT ++ A T TGRL
Sbjct: 603 EEVLQSLES-KSPIVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH+++   + + F  
Sbjct: 662 SSSDPNLQNIPVRTDDGKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAFRE 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AA+I+ V+I+KV+   R+ AK  NF IIYGI+ + LA ++ IP  EA + I+
Sbjct: 722 GHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIE 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +  Y+E  K   R  GY ET+F RR +  +INS  +++R   ER AINAPIQ
Sbjct: 782 GYFRTFPKVQAYMEHAKEVARAKGYAETLFHRRRYLADINSRNATVRGFAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+ ADI + AM+ + +  +   + +KM+LQ+HDEL F V  EE     +I++  M+ A  
Sbjct: 842 GTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEEREQVERIVIEEMQNA-- 899

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L VPL  +     NW E
Sbjct: 900 --YPLNVPLIADAGWGKNWLE 918


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 344/983 (34%), Positives = 541/983 (55%), Gaps = 79/983 (8%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYR++YA    P ++ K  GL  + + GFCN L ++L   +     +H 
Sbjct: 5   DKLFLLDAYALIYRSYYAFMKAPRINSK--GLNTSCVMGFCNTLNEILTKEK----PTHI 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD+   TFR+E +P YKA R + PE +   +P+++   +A+ IP +++ GFEADDII
Sbjct: 59  AVAFDH-GKTFRHEAFPAYKAQREETPEDIKLSVPIIKNILEAYHIPILQVDGFEADDII 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177
            T    A ++G    +++ DKD  QLV     ++        EK+ ++ + +K+ I  P 
Sbjct: 118 GTVALKAGEKGMETYMLTPDKDYAQLVRNNVFMFRPRHGGGYEKLGVQEIEEKYSITSPL 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GDS DN PG PG+G KTA  L+ E+G++E ++ N+S++K  K RE +    
Sbjct: 178 QVIDLLALMGDSADNFPGCPGVGEKTAIKLINEFGSVEGLIENSSQVK-GKLREKVEGAV 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  R+S+ L  +RTDVP+ I +E L   + +  +L      LEF    NRV         
Sbjct: 237 EDIRMSKFLATIRTDVPVEIRMEDLKRVEPDNTKLDEIFTELEFKSFANRVL-------- 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                        NK   ++T+   +  +   Q +         +S++ P+    E ++ 
Sbjct: 289 -------------NKPKKVQTKAIGELDLFGVQLA---------DSKEEPKNASFETIKT 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S       SY  I    D ++    L T    S    T +  A  ++ + ++ +    K
Sbjct: 327 TSH------SYKLIDTEVDAKKLYDYLLTFNILSLDTETTSTTAIDAELVGLSFAV---K 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +  +F V       ++  +++   K      I++  K  +EN   LK+G NIKYD  VL 
Sbjct: 378 EKEAFYV-------AIPANREEALK------IVNIFKPLYENPEILKVGQNIKYDYEVLI 424

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDK 532
            YGI ++G   D ML  Y++      H++  +A+ +L+Y     +E++  + K+   +  
Sbjct: 425 NYGIEIQGKMFDTMLAHYLIQP-ELYHNMDYLAEVFLNYQTIHIEELIGPKGKNQKSMRD 483

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++ S + E+A E++++ L+L  +L  KL       ++  ++ P++ V++ ME+TG+ ID 
Sbjct: 484 LAPSDIYEYAAEDADITLRLKNVLESKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCIDT 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651
           D LK+ S  ++  L  +E +IY+L+GE FN++SP+Q+G+ILF K+K      KTKTGQ+ 
Sbjct: 544 DTLKETSENLTNRLNEIEHHIYELAGESFNIASPRQVGEILFGKMKIVEKPKKTKTGQYV 603

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + L+Q+    +PII  IL +R L K+  TY D+LP  IN RT  +H  ++ A T TG
Sbjct: 604 TSEEVLQQLRS-KSPIIDEILNYRGLKKLLGTYIDALPKLINSRTGHIHASFNQAITATG 662

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ D G++IRR FI  P     SADYSQIELRI+AH+++   + + F
Sbjct: 663 RLSSSDPNLQNIPVRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMVEAF 722

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AA+I+  +I++V+   R+ AKT NF IIYGI+ F LA ++ I   EA   
Sbjct: 723 REGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIYGITTFGLAQRMNIENREAKQI 782

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF  FPG+  Y+EK K   R+ GY ET+F RR +  +INS   ++R   ER AINAP
Sbjct: 783 IEDYFRTFPGVQAYMEKAKEMAREKGYAETLFHRRRYLPDINSKNGTVRGFAERNAINAP 842

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGS ADI + AMI +        + +KM++Q+HDEL F V  EE     +I+V  M+ A
Sbjct: 843 IQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELNFSVYPEEKEKVEKIVVEEMQNA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    NNW E
Sbjct: 903 ----YQLSVPLVADAGWGNNWLE 921


>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
 gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
          Length = 939

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 361/992 (36%), Positives = 535/992 (53%), Gaps = 77/992 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           MQK+  LFL+D  + IYRA+YA    P L+    G   NA  GF + L  L+   +    
Sbjct: 1   MQKK--LFLLDAMALIYRAYYALIRNPRLTST--GRNTNAQFGFTSTLLDLINKEK---- 52

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV FD  A T R+  + DYKANR   PE +L  L  ++   + F IP +E+ G+EA
Sbjct: 53  PTHMAVAFDTHAPTERHTTFVDYKANRMDAPEDILDSLDDIKRIIKGFNIPVVELDGYEA 112

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173
           DD+I T  + A   G+ V +++ DKD  QLV     +Y       KEE +  + V +KW 
Sbjct: 113 DDVIGTLAWQAADAGYDVYMVTPDKDYGQLVRNNVFIYKPPYMGNKEEILGPKEVCEKWQ 172

Query: 174 IPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           I    +++ +  L GD++DNIPGIPG+G KTA  LL +Y ++E ++ NA +I   K  E 
Sbjct: 173 ITDVHQVIDILGLMGDAVDNIPGIPGVGEKTAMKLLSQYHSVEEVIANADKIG-GKMGEK 231

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA--- 289
           I   AE+A LS++L  + TDVP+T   E   ++D N  +LI     LEF  L  R+    
Sbjct: 232 IKAGAESAVLSKQLATIITDVPVTFHEEDFCIKDPNREQLIEVFTELEFKTLGKRILGDG 291

Query: 290 -TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
             T   + A    V LD+   E +G A           + +Q   LS   +  N   TP 
Sbjct: 292 FATPAAEPATPPKVQLDLFGNEIQGAAPPVS-------EEAQDVPLSIMVADKNINNTPH 344

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
              L             D+  K     ++    Q++      SF   T   DA     + 
Sbjct: 345 NYILA------------DTPEKRAELLELLLKQQEI------SFDTETTGTDANAVDLVG 386

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           ++ S            E  +I +    +Q         + I+      F   H   IG N
Sbjct: 387 MSFSIK--------AGEGWYIPVPADKAQ--------AQAIVDSFLPLFNTTHITLIGQN 430

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT----RKEILK 522
           IKYD +V+  YG+   G   D ML  Y+++  GR   D+  ++ ++L Y        I K
Sbjct: 431 IKYDMIVMKWYGVEFNGPVFDTMLAHYLIEPEGRRGMDL--LSAQYLQYEPVSIETLIGK 488

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K    +  +   +++E+A+E++++ LQL     P L ++ +  V+  ++ P++ V++ 
Sbjct: 489 KGKGQGNMRDVEIDKIKEYAVEDADITLQLKEKFAPLLPLKAVDKVFYDVENPLVRVLTD 548

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641
           ME  GI +D   L   S E+   +   EE++Y  +G +FNL+SPKQLG++LF KL   P 
Sbjct: 549 MEYEGIALDIQALSDYSRELETEIKRAEESVYTQAGVRFNLASPKQLGEVLFEKLLLDPK 608

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTGQ+ T    L ++    + I+++IL +R+LSK+KSTY D+LP  +NKRT RVHT
Sbjct: 609 AKKTKTGQYATGEDVLAKL-ANKHQIVEDILVFRELSKLKSTYVDALPLMLNKRTNRVHT 667

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAH 760
            Y+ A  +TGRL+S  PNLQNIPI+TD G+++R+AF++      L+SADYSQIELRI+A 
Sbjct: 668 SYNQAVAVTGRLSSNNPNLQNIPIRTDRGREVRKAFVAKNEDYVLMSADYSQIELRIIAA 727

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           I+    +   F   LDIH   AA+++GV +  V+  MRR+AK++NF IIYG+S F L+  
Sbjct: 728 ISGDVHMIDAFRQGLDIHAATAAKVYGVELADVTADMRRNAKSVNFGIIYGVSAFGLSEN 787

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I R EA   I  YF ++P I +Y++      +QNGYVET+ GR+    +INS  + +R
Sbjct: 788 LGIARGEAKTLIDNYFAQYPSIKKYMDDQIKSAQQNGYVETLLGRKRWLKDINSSNAVVR 847

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER AIN PIQG+AAD+ + AMIS+HK+L+   L ++M+LQ+HDELVF+V ++EI   
Sbjct: 848 GYAERNAINMPIQGTAADMIKLAMISIHKTLKKENLRSRMILQVHDELVFDVHKDEIEQI 907

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +I   M  A LP   L VP+ V I +  NW
Sbjct: 908 KPLIQDGMRNA-LP---LAVPVDVEIGIGVNW 935


>gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
 gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
          Length = 864

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 329/971 (33%), Positives = 526/971 (54%), Gaps = 142/971 (14%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +VD   F++RA+YA P L     G P+  + GF N+L K L        A + AV+FD  
Sbjct: 20  VVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFDTG 74

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +  FR+ +YP YK NRP++PE LL Q   +R A  A GI + E+  FEADD+IAT +   
Sbjct: 75  SKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKY 134

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
             E   V +I+ DKDL+QL+     ++D +K + +  E+V+ K+G+ P+K++ + ALTGD
Sbjct: 135 ASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLLDVLALTGD 194

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA--RLSRKL 246
           + DNIPG+P IG KTAA L+ ++G+L+                N+L  AE    +  R++
Sbjct: 195 ASDNIPGVPSIGVKTAARLINQFGSLD----------------NVLSCAEKVEQKKCREM 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV--L 304
           ++   D       + L+  D     L+S  +A+EF   +N+ A     D+  +   +   
Sbjct: 239 LIQHAD-------QALLSRD-----LVSLQRAVEFDGDLNKYAKKLP-DSEQLLAFLEKY 285

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           ++N+   K             I+     SL     +  + + P+                
Sbjct: 286 ELNSLRGK-------------IEQCYQISLESPDRQGGAGEMPES--------------- 317

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                   +T+D   +++K E +G          + AFH+K   IA  T+++        
Sbjct: 318 --------HTEDPVAFLRKCENVG----------LLAFHAK---IADGTINE-------- 348

Query: 425 ETIFIDLSVHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                 LSV   ++   T +    +  +   ++   ++  LKI H+ K    ++ R+   
Sbjct: 349 ------LSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPD 398

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           +  F+D+MLMSY LD+G   H +A +A ++L                         Q+  
Sbjct: 399 LGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFP 434

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
              +  ++QL  ++R KL++++L  VY +L++P++ V+ +M+  G+++D ++LKQ+S + 
Sbjct: 435 ARLACTLVQLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDF 494

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQIN 661
             ++ SLE+ IYDL+G KFN++S +QLG +LF ++   S AK   +G + T A+ L ++ 
Sbjct: 495 HGSIRSLEKEIYDLAGCKFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELA 554

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   +L+WR  SK+KSTY D+L   +   T+RVHT YS+ ST TGR++S  PNLQ
Sbjct: 555 AEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQ 614

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI++  G +IR+AF++    KL+SADYSQ+EL+I+AHIA +      F    DIH + 
Sbjct: 615 NIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVT 674

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A +IFG  +    P++RR AK+INF IIYG+SPF LA  + I R EA+ Y+ +YF  +P 
Sbjct: 675 AQQIFGDGV--TDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPE 732

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  Y+E  K + R+ GY  T FGR+ +   INS + ++R   ERAAINAPIQG+AAD+ +
Sbjct: 733 IKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVK 792

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           +AMI++   LE       ++LQ+HDEL+ EVPE  +   ++++   ME       N  VP
Sbjct: 793 KAMINLRNKLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVP 844

Query: 962 LKVNIKVSNNW 972
           LKV+I V ++W
Sbjct: 845 LKVDIGVGSSW 855


>gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico]
 gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia]
          Length = 853

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 329/971 (33%), Positives = 526/971 (54%), Gaps = 142/971 (14%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +VD   F++RA+YA P L     G P+  + GF N+L K L        A + AV+FD  
Sbjct: 9   VVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFDTG 63

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +  FR+ +YP YK NRP++PE LL Q   +R A  A GI + E+  FEADD+IAT +   
Sbjct: 64  SKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKY 123

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
             E   V +I+ DKDL+QL+     ++D +K + +  E+V+ K+G+ P+K++ + ALTGD
Sbjct: 124 ASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLLDVLALTGD 183

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA--RLSRKL 246
           + DNIPG+P IG KTAA L+ ++G+L+                N+L  AE    +  R++
Sbjct: 184 ASDNIPGVPSIGVKTAARLINQFGSLD----------------NVLSCAEKVEQKKCREM 227

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV--L 304
           ++   D       + L+  D     L+S  +A+EF   +N+ A     D+  +   +   
Sbjct: 228 LIQHAD-------QALLSRD-----LVSLQRAVEFDGDLNKYAKKLP-DSEQLLAFLEKY 274

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           ++N+   K             I+     SL     +  + + P+                
Sbjct: 275 ELNSLRGK-------------IEQCYQISLESPDRQGGAGEMPES--------------- 306

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                   +T+D   +++K E +G          + AFH+K   IA  T+++        
Sbjct: 307 --------HTEDPVAFLRKCENVG----------LLAFHAK---IADGTINE-------- 337

Query: 425 ETIFIDLSVHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                 LSV   ++   T +    +  +   ++   ++  LKI H+ K    ++ R+   
Sbjct: 338 ------LSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPD 387

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           +  F+D+MLMSY LD+G   H +A +A ++L                         Q+  
Sbjct: 388 LGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFP 423

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
              +  ++QL  ++R KL++++L  VY +L++P++ V+ +M+  G+++D ++LKQ+S + 
Sbjct: 424 ARLACTLVQLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDF 483

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQIN 661
             ++ SLE+ IYDL+G KFN++S +QLG +LF ++   S AK   +G + T A+ L ++ 
Sbjct: 484 HGSIRSLEKEIYDLAGCKFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELA 543

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   +L+WR  SK+KSTY D+L   +   T+RVHT YS+ ST TGR++S  PNLQ
Sbjct: 544 AEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQ 603

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI++  G +IR+AF++    KL+SADYSQ+EL+I+AHIA +      F    DIH + 
Sbjct: 604 NIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVT 663

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A +IFG  +    P++RR AK+INF IIYG+SPF LA  + I R EA+ Y+ +YF  +P 
Sbjct: 664 AQQIFGDGV--TDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPE 721

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  Y+E  K + R+ GY  T FGR+ +   INS + ++R   ERAAINAPIQG+AAD+ +
Sbjct: 722 IKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVK 781

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           +AMI++   LE       ++LQ+HDEL+ EVPE  +   ++++   ME       N  VP
Sbjct: 782 KAMINLRNKLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVP 833

Query: 962 LKVNIKVSNNW 972
           LKV+I V ++W
Sbjct: 834 LKVDIGVGSSW 844


>gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 929

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 345/985 (35%), Positives = 530/985 (53%), Gaps = 83/985 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + I+R +YA    P ++ K  GL  +AI GF N L+ +++  R      H AV
Sbjct: 5   LFLLDAYALIFRGYYAFIKNPRINSK--GLNTSAILGFMNSLFDVMKKERPH----HLAV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD      R E++ DYKANR + PE +   +P +     A  IP IE +G+EADDII T
Sbjct: 59  AFDKGGSVARTELFADYKANREETPEAIRIAIPYIHQILNALHIPIIEKEGYEADDIIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-------- 175
               AEK+ + V +++ DKD  QLVS    +Y   +    DIE     WG+         
Sbjct: 119 LAKQAEKQDYQVYMVTPDKDYAQLVSDNIFMYRPPRGGN-DIE----IWGVKEVQEKFEV 173

Query: 176 --PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++    + GD++DNIPG+PG+G KTA  LL ++G+LEN+L N  ++K  K RENI
Sbjct: 174 QNPLQVIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSLENLLANTDQLK-GKLRENI 232

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E   LS++L  +  DVP+    +   +   +   +    + LEF +L+      Y 
Sbjct: 233 ENNKEKGILSKQLATIMLDVPVVFDEKDCEVSTPDFEAVGKLFEELEFRQLLVNFQKVYQ 292

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            +A             ++   A   ++D    ++   F+       K  +  TP      
Sbjct: 293 PEA-----------VVQSNQKAPSAQLDM-FAVQGDLFAQPQVAVEKKTAANTPH----- 335

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
              +L+  P+      + +  +                F   T  +DA  ++ + I+   
Sbjct: 336 -YYQLADTPMAQQLLLQSLLQQT------------EVCFDTETTAIDALEAELVGISFCW 382

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              K          ++   V   + +   NTL        + FFENE   K+G N+KYD 
Sbjct: 383 TAHKG--------YYVPFPVDKEEATALLNTL--------RPFFENEKITKVGQNLKYDL 426

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
            VL  YGI ++G   D M+  Y+++     H++  +++ +L YT    + ++   K+   
Sbjct: 427 KVLQNYGIKVQGALFDTMIAHYLINPDM-RHNMDLLSETYLGYTPIAIESLIGKGKAQRS 485

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  ++  +V+E+A+E+++V  QL  + + +L       VY  L+ P++ V++ ME  G+ 
Sbjct: 486 MRTVALEEVKEYAVEDADVTWQLKDVFKAELPKVNAQKVYADLEMPLLKVLAVMEREGVT 545

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTG 648
           +D   LK+ S  +   +  LE  I + +G  FNL+SPKQLGDILF KLK  S   KTKTG
Sbjct: 546 LDVAYLKEYSKTLDAEIAQLEATIAEQAGTPFNLASPKQLGDILFEKLKIDSKPKKTKTG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + L       + I+ +ILEWRQ+ K+KSTY D+LP  +N RT RVHT Y     
Sbjct: 606 QYATSEEVLAPF-AAKHKIVADILEWRQVQKLKSTYVDALPLEVNPRTGRVHTTYMQTVA 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ GQ++R+AFI+      L+SADYSQIELRI+A +++   +
Sbjct: 665 ATGRLSSNNPNLQNIPIRTERGQRVRKAFIARNDDYILLSADYSQIELRIIAALSEEHNM 724

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F +  DIHR  AA++F V +E V+ + R HAKT+NF IIYG+S F L+ Q  + RS+
Sbjct: 725 IESFLHGEDIHRATAAKVFNVPLEAVTREQRSHAKTVNFGIIYGVSAFGLSAQTDLSRSQ 784

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + + I  Y+  +P +  YI+K  +F +++GYVET+ GRR +  +I+S    +R   ER A
Sbjct: 785 SKELIDTYYATYPNLRNYIQKQIHFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAERNA 844

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI ++  L+  +L T+MLLQ+HDELVF+VP+ E+     +I   
Sbjct: 845 VNAPIQGSAADIIKIAMIRIYDLLQAQQLQTRMLLQVHDELVFDVPKTELEIVKPLIKEV 904

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           ME A      L VPL  ++ V NNW
Sbjct: 905 MESA----FTLAVPLVADLGVGNNW 925


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 338/995 (33%), Positives = 535/995 (53%), Gaps = 80/995 (8%)

Query: 6   HLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            LFL+D  + I+R +YA    P ++ K  G+  +AI GF N    +++  R +    H A
Sbjct: 7   RLFLIDAFALIFRGYYALIKNPRINSK--GMDTSAIMGFMNSFLDVIKKERPD----HLA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD      RNE++  YKANR + P+ +   +P +    +A  +P +  +G+EADD+I 
Sbjct: 61  VCFDKGGSAARNEMFEAYKANRDETPDGIKIAIPYIYKILEAMQVPIMVKEGYEADDVIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP------- 175
           T +  AEK G+   +++ DKD  QLVS    +Y  +           + WGIP       
Sbjct: 121 TLSKQAEKAGYTTFMVTPDKDFAQLVSENIFMYRPM------FGGGYETWGIPQVQKRFE 174

Query: 176 ---PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
              P +++    + GD+ DNIPG+PG+G KTA   ++++G++E +L N  ++K  K +E 
Sbjct: 175 VENPLQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIKQFGSMEGLLENTDQLK-GKMKEK 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++  AE   LS+KL  +  DVP+    E   +   +   +    + LEF +L       +
Sbjct: 234 VIANAELGLLSKKLATIMLDVPVAFNAEDFEMSTPDVAAVTEIFEELEFRRLTTNFTKAF 293

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQK 349
             +A      +    T      A +TE  +   I  +   QFS     T++  +    +K
Sbjct: 294 SVEA------MASKGTNHQDTPAKKTETKKAAPITNAGEGQFSLFGGDTTETATTSNSRK 347

Query: 350 LF--LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                E   +L Q  +    +            +Q L    S  F   T  ++   ++ +
Sbjct: 348 TIKDTEHFYQLVQPGMGTTLF------------IQNLMKQPSVCFDTETTGLNPLTAELV 395

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            IA S    K          +I                 +EI+  L+ FFE     KIG 
Sbjct: 396 GIAFSWEAGKG--------FYIAFPKEKEA--------AQEIIELLRPFFEATEIEKIGQ 439

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----K 522
           N+KYD  VL +Y I ++G   D ML  Y+++     H++  +A+ +L+YT   I     K
Sbjct: 440 NLKYDLKVLRKYDIVVKGQLFDTMLAHYLINPDMR-HNMDILAETYLNYTPVSITELIGK 498

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K+   +  +  +   E+A+E++++ LQL      +L       ++  ++ P++ V++ 
Sbjct: 499 KGKNQKSMRDVPVADQTEYAVEDADITLQLKEHFSKELGEANTQKLFTDIEVPLLRVLAA 558

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641
           ME  GI +D+  L  +S ++  ++ SLE+NIY  +GE+FN++SPKQLG+ILF K+K    
Sbjct: 559 MEAEGINLDKTFLNSLSDDLESDIASLEKNIYAEAGEEFNIASPKQLGEILFGKMKLVEK 618

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTGQ+ +TA+D+      D+ II ++LE+R L+K+KSTY D+LP  +   TQRVHT
Sbjct: 619 PKKTKTGQF-STAEDVLSALAKDHKIIADVLEYRGLAKLKSTYVDALPLQVEPATQRVHT 677

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759
            Y      TGRL+S  PNLQNIPI+T+ G+++R+AF+ P  +   L++ADYSQIELRI+A
Sbjct: 678 DYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFV-PRDENYVLLAADYSQIELRIIA 736

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            +++   + + F+N  DIH   A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ 
Sbjct: 737 ALSQEETMMEAFKNGEDIHASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSN 796

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           Q  + R EA + I  Y+  +P +  Y+ +  NF R NGYVETI GRR + + IN   + +
Sbjct: 797 QTSLSRGEAKELIDAYYETYPKLKHYMSEQVNFARDNGYVETIMGRRRYLNAINGSNAIV 856

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER A+NAPIQGSAADI + AMI++++ LE+    TKMLLQ+HDELVF+V ++E+  
Sbjct: 857 RGAAERNAVNAPIQGSAADIIKIAMINIYRKLEEGNYKTKMLLQVHDELVFDVHKDELDE 916

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +I H ME A L    + VPL V + +  NW E
Sbjct: 917 MKTMIKHEMENAYL----MDVPLDVEVGIGQNWLE 947


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 345/988 (34%), Positives = 547/988 (55%), Gaps = 57/988 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MNSIDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E +  E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDNVFMYRPKHTGGFEIMGTEEVKTKFSI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
               +++ +  L GD+ DNIPG PG+G KTA  L+ ++G++EN+L +  ++K    +  +
Sbjct: 175 QSTAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLVAQFGSIENLLEHTDQLK-GALKTKV 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++TDVPI + ++ L+ E+ N   L    + LEF  LI+RV     
Sbjct: 234 ETNREMIAFSKFLATIKTDVPIRLKMDSLVREEPNEEELRKIFEELEFRTLIDRVLKKGS 293

Query: 294 CDAANIEPV--VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            ++++  P   V D+           +  +    I+   F++ + + + ++         
Sbjct: 294 GNSSSPTPTSPVPDLFAGTLFAQPQTSTPENSAPIQGDLFANFAGEGTGVSENSN----- 348

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQ-QWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
           L RL+ L       D   ++++T+D + + +QKL T    S    T   +   ++ + ++
Sbjct: 349 LTRLEML-------DVDYQLIDTEDKRAEIIQKLLTSEILSIDTETTGTEPMDAELVGMS 401

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S  + +          ++ +     +          +I++  +  FENE  +K+G NIK
Sbjct: 402 FSDAENR--------AYYVPVPAEREE--------VLKIVNEFRPLFENEKSMKVGQNIK 445

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRK 525
           YD ++L  YG+ ++G   D ML  YVL      H++  +A+ +L Y      K I    K
Sbjct: 446 YDMIILQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDKLIGARGK 504

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           +   +  +S   V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +E 
Sbjct: 505 NQKNMRDLSPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIEMPLVPVLVNIES 564

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK- 644
            G+ +D + LKQ S   +  L  +E+ IY+++GE FN+SS KQ+G++LF KLK    AK 
Sbjct: 565 NGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGETFNISSAKQVGEVLFDKLKIVEKAKK 624

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQ+ T+ + L+      + II  ILE+R L K+ STY D+LP  IN RT R+HT ++
Sbjct: 625 TKTGQYVTSEEVLQSYRSKHD-IIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFN 683

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++ 
Sbjct: 684 QAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSED 743

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             + + F +  DIH   AA+I+ ++I  V+  MRR AKT NF IIYGIS F LA ++ + 
Sbjct: 744 KNMIEAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVS 803

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA + I  YF  +P + EY++K+    R+ GYVETIF R+    +INS    +R   E
Sbjct: 804 RQEAKELIDGYFETYPQVKEYMDKSIQVAREQGYVETIFHRKRFLPDINSRNGVVRGYAE 863

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AINAPIQGSAADI + AM  +++  + + L  KM+LQ+HDEL F VPE E     +I+
Sbjct: 864 RNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKELVQKIV 923

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +  ME+A      ++VPLK +    NNW
Sbjct: 924 IEEMEQAY----RMQVPLKADCGWGNNW 947


>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
 gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
          Length = 980

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 343/994 (34%), Positives = 532/994 (53%), Gaps = 68/994 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  +FLVD  + I+R +YA    P ++ K  GL  +AI GF N L  +++  + +  
Sbjct: 33  MSDQKRVFLVDAFALIFRGYYAFIKNPQINSK--GLDTSAIMGFMNSLLDVIKREKPD-- 88

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E++  YKANR + PE +   +P ++   +A  IP +   GFEA
Sbjct: 89  --HLAVCFDKGGSVDRVEMFEAYKANRDETPEAIKIAVPYIQEILKAMHIPIMVKAGFEA 146

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DD+I T +  AEKEG+   +++ DKD  QLVS    +Y        DI      WG+P  
Sbjct: 147 DDVIGTLSKQAEKEGYKTFMVTPDKDFAQLVSDNIFMYKPRFGGGYDI------WGVPEV 200

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   P +++    + GDS DNIPG+PG+G KTA   L  YG +EN+L N   +K  
Sbjct: 201 QEKFGVTDPLQVIDFLGMMGDSADNIPGLPGVGEKTAKKFLTTYGTMENLLANTHELK-G 259

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K RE +    +   LS+KL  +  DVP+T   +   L+  + P++      LEF  L+  
Sbjct: 260 KMREKVEAAKDLGLLSKKLATIMLDVPVTFNAKDFELDQPDMPKVTELFNELEFRNLLKN 319

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
              T+  D A  E      N +E K   I+    ++T I   QF   +   +   SE+  
Sbjct: 320 FTKTFAIDTA--EETGASKNGSEEK---IKATPKKETLIPEGQFDLFAAPGTGSVSEE-- 372

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                E           N  Y  I +       ++ L    +  F   T  + A   + I
Sbjct: 373 -----EIASGFKTISTTNHFYQHIDSPFARTLLLRNLMKQTAVCFDTETTGLKALEVELI 427

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            IA S    K               V   +D       T+ IL   + FFE+E   KIGH
Sbjct: 428 GIAFSYETGKG------------YYVSFPEDQAE----TQRILEDFRPFFESE-IEKIGH 470

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILK 522
           N+KYD  VL  Y + ++G   D M+  Y+++     H++  +A+ +L+Y      + I K
Sbjct: 471 NLKYDIKVLSTYKMPVKGKLFDTMIAHYLINPDMR-HNMDVLAETYLNYQPISIAELIGK 529

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K+ + +  +   +  E+A+E++++  QL  L   +L    +  ++  ++ P++ V++ 
Sbjct: 530 KGKNQLSMRSVPLKEQTEYAVEDADITFQLKQLFTGELENGNVTKLFNDIELPLVSVLTA 589

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641
           MEI GI ++ D LK++S  ++ ++  LE++IY+ +GE+FN++SPKQLG +LF K++    
Sbjct: 590 MEIEGINVNTDFLKELSVALTADIDRLEKSIYEQAGEEFNIASPKQLGIVLFEKMELVKK 649

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTGQ+  T +D+      ++ IIK+I E+RQ  K++STY D+LPN +N +T R+HT
Sbjct: 650 PKKTKTGQY-ATGEDILSYLAKEHDIIKDIQEYRQYKKLQSTYVDALPNEVNPKTGRIHT 708

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAH 760
            Y  A   TGRL+S  PNLQNIPI+T  G+++R+AF+       L++ADYSQIELRI+A 
Sbjct: 709 QYMQAVAATGRLSSNNPNLQNIPIRTARGREVRKAFVPRDENHVLLAADYSQIELRIIAA 768

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   +   F+N  DIH   AA++F V + +V+   R +AKT+NF I+YG+S F L+ Q
Sbjct: 769 LSEEENMINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVYGVSAFGLSNQ 828

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             + RSEA + I  Y+  +P +  Y+    +F R++GYVET+  RR +  +INS  + +R
Sbjct: 829 TDLSRSEAKELIDTYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNAVVR 888

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           N  ER A+NAPIQGSAADI + AMI++ K  E     ++MLLQ+HDELVF+  ++E+   
Sbjct: 889 NGAERNAVNAPIQGSAADIIKLAMINIQKRFEKEGFRSRMLLQVHDELVFDTHKDELEII 948

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             II + ME A      + VPL V + +  NW E
Sbjct: 949 KPIIKYEMEHA----FKMSVPLDVEVGIGENWLE 978


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 345/989 (34%), Positives = 528/989 (53%), Gaps = 97/989 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA+Y+ P L+    G    A+ G  NML  LL    K+   +  AV
Sbjct: 6   ENPLVLVDGSSYLYRAYYSPPHLTNSK-GEATGAVYGVINMLRSLL----KQYEPTQMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRN++Y DYKA RP +P+ L  Q+ PL R+  +A G+P + I G EADD+I 
Sbjct: 61  VFDAKGKTFRNDMYEDYKAQRPPMPDDLRTQIEPLHRI-IRAMGLPLVCISGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  A K G AV I + DKD+ QLV     L +T+    +    V +K+G+ PE ++ L
Sbjct: 120 TISTQASKSGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPAEVTEKFGVGPELIIDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +L   G ++ IL    ++ +      K     + E+
Sbjct: 180 LALQGDKSDNIPGLPGVGEKTAVAMLTGAGGIDKILAAPEKMPELGFRGSKTMPAKLAEH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           +E  +LS  L  ++ DV +    + L ++  +   LI     +EF + +  V        
Sbjct: 240 SEILKLSYALATIKLDVELEQDWQDLTIKPADRDELIECFGEMEFKRWLADV-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                  LD  T   K                             + + T +++  + +Q
Sbjct: 292 -------LDNKTDSGK-----------------------------SEKNTDEEVIKQDIQ 315

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      YT I   +++  W+ KL      +    T +++   +K + I+ + ++ 
Sbjct: 316 T---------EYTTIYTHEELDLWIDKLANADLIAIDTETTSLNYMDAKLVGISFA-IEA 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  +   ++D      Q          E L+ LK   EN    K+G N+KYD  + 
Sbjct: 366 GKAAYLPLGHDYLDAPEQLDQ---------AEALAKLKPLLENPELKKVGQNLKYDISIF 416

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
              GI ++G   D ML SYV +S  + H++  +A K+L +   + +EI       +  ++
Sbjct: 417 ANVGIKLQGIAFDTMLESYVFNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQ 476

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           I       +A E++++ L+L   L P+L  E +L  V+  ++ P+I V+S +E  G+ ID
Sbjct: 477 IDLETAAPYAAEDADITLRLHQHLWPRLEKEPELASVFTDIELPLIQVLSDIERGGVLID 536

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L Q S E+++ +  LE+  ++++GEKFNLSSPKQL  + F KL +P   KT  G   
Sbjct: 537 SMMLGQQSGELARTIDELEQKAFEIAGEKFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPS 596

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++   D P+ K IL+ R L+K+KSTY D LP  +N ++ RVHT Y  A+  TG
Sbjct: 597 TAEEVLVELAL-DYPLPKIILQHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAATG 655

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIPI+T+ G++IR AFI+   KK+++ADYSQIELRI+AH+++   L   F
Sbjct: 656 RLSSSEPNLQNIPIRTEEGRRIRHAFIAREGKKVLAADYSQIELRIMAHLSQDEGLLTAF 715

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAE+F V+  +V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y
Sbjct: 716 AAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRPEAQKY 775

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R+PG+ +Y+E+T+      GYV T++GRR++   I    +  R   ERAAINAP
Sbjct: 776 IDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAP 835

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATK------MLLQIHDELVFEVPEEEITTASQIIV 945
           +QG+AADI ++AMI++      H +AT+      M++Q+HDELVFEV  +        + 
Sbjct: 836 MQGTAADIIKKAMINIA-----HWIATETHGEIDMIMQVHDELVFEVDSDRAEEMQAKVC 890

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M  A    ++L V L     + +NW++
Sbjct: 891 QLMADA----VSLDVELLAEAGIGDNWEQ 915


>gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
 gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
          Length = 942

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 338/1010 (33%), Positives = 545/1010 (53%), Gaps = 106/1010 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFLVD  + I+R +YA    P ++ K  G   +AI GF N L+ +++    +  
Sbjct: 1   MASKKRLFLVDAYAMIFRGYYALIKNPRINSK--GQDTSAIMGFMNSLFDVIKRENPD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E+Y +YKANR   P ++   +P+++    A  IP +EI G EA
Sbjct: 57  --HLAVCFDKDGSKDRKEMYVEYKANRDATPTVIKDSIPIIQDILHAMEIPVVEISGMEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DDII T    AEK+ + V +++ DKD  QLV+    +    +     + + ++KWGIP  
Sbjct: 115 DDIIGTLAIQAEKQNYEVHMVTPDKDFAQLVTENIFMQRPAR-----MGNGVEKWGIPEV 169

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   PE+++    + GD+ DNIPG+PG+G KTA   LQ++G++E +L N  ++K  
Sbjct: 170 QKKFGVERPEQVIDFLGMMGDAADNIPGLPGVGEKTAKKFLQQFGSMEVLLENTDQLK-G 228

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +E I + AE  RLS++L  + TD  +T       +   N  +++   K LEF +L  +
Sbjct: 229 KMKEKIEKNAELGRLSKRLATIITDCDVTFDEVKYEVSPPNVEKVLDIFKELEFRRLTEQ 288

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDT-----TIKTSQFSSLSDQTSKIN 342
               Y                  NKG AI  +  ++T     T    QFS   + T   N
Sbjct: 289 FVKMY------------------NKGEAIVEKPSQNTSSSPQTAGAGQFSLFGNDTDVSN 330

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQK----------LETIGSASF 392
            E                 P + D Y  + +T    Q+V+           L    S  F
Sbjct: 331 IE-----------------PSHFDGYKTLKSTDHHYQYVKGGLSLKLFIEILMKQNSVCF 373

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
              T ++    ++ + IA S    K               V   +D        +E++  
Sbjct: 374 DTETTSLKTLDAELVGIAFSWESHKG------------FYVAFPEDQNE----AQELVEK 417

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511
           L+ FFE+    K+G N+KYD  VL  Y + ++G   D ML  Y+++     H++  +A+ 
Sbjct: 418 LRPFFESTEIEKVGQNLKYDIKVLANYKLKVKGPLFDTMLAHYIINPDMR-HNMNILAET 476

Query: 512 WLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +L+Y+ + I     K  K    +  +S     ++A+E++++  QL      +L       
Sbjct: 477 YLNYSPQPIEDLIGKKGKRQKTMRTVSLEDQTQYAVEDADITFQLKTYFEKELKEASNEP 536

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P++ V++ MEI GI +D+  L+ +S ++ +++  LE+++Y  +  +FN+ SPK
Sbjct: 537 LFKDMEIPLLRVLAAMEIEGINLDKSALENISEKLDEDIERLEKSVYVEAEGEFNIGSPK 596

Query: 628 QLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           QLG+ILF KL+      KTK+GQ+ T  + L      D+ I++ +LEWRQLSK+KSTY D
Sbjct: 597 QLGEILFGKLEIAKKPKKTKSGQYSTGEEVLSNY-AKDHKIVREVLEWRQLSKLKSTYVD 655

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
           +LP  I+ RT+RVHT +      TGRL+S  PNLQNIPI+T+ G+++R+AF+ P  +   
Sbjct: 656 ALPKQIHPRTKRVHTEFMQTVAATGRLSSNNPNLQNIPIRTERGREVRKAFV-PRDENYV 714

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L++ADYSQIELRI+A +++   +   F+N  DIH   AA +FGV+IE+V+   R +AKT+
Sbjct: 715 LLAADYSQIELRIIAALSQEKTMMNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTV 774

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYG+S F L+ Q  + R+E+ + I+ Y+  +P + +Y+++   F +++GYV+T+ G
Sbjct: 775 NFGIIYGVSAFGLSNQTDLTRNESKELIETYYKTYPKLRDYMDEQVEFAKEHGYVKTVMG 834

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +IN+    +R+  ER A+NAPIQGSAADI + AMI+++ +LE+    +KMLLQ+
Sbjct: 835 RRRYLKDINAKNHIVRSAAERNAVNAPIQGSAADIIKVAMINIYDALEEQNFKSKMLLQV 894

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+F+  ++EI   + ++   ME A      L VPL V +    NW E
Sbjct: 895 HDELIFDAHKDEIDALTALVKDKMENA----FKLDVPLDVEMGTGQNWLE 940


>gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM
           22836]
          Length = 933

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 352/985 (35%), Positives = 547/985 (55%), Gaps = 73/985 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  G   +A+ GF N L +LL   RKE+  +H AV
Sbjct: 3   LFLLDAYALIYRSYYAFIKNPRVNSK--GQNTSAVFGFVNTLEELL---RKEN-PTHIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD P  TFR++ Y  YKA R + PE +   +P+++    A+ I  +E+  +EADD+I T
Sbjct: 57  AFDPPGGTFRHDAYEKYKAQRQETPEDIRAAVPIIKEIIAAYNIKELEVPYYEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----TVKEEKIDIEHVIKKWGIP-PEK 178
               AEKE   V +++ DKD  QL S    +Y         + +D + +++K+ +  P++
Sbjct: 117 IAKKAEKENIDVYMMTPDKDYGQLTSDHVFMYKPKFAGSGFDVLDAKAIMEKYELSSPDQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEY 236
           M+ L  L GD+ DNIPG PG+G KTA  LL+EYG +EN+L + S IK   K+R E+    
Sbjct: 177 MIDLLGLMGDASDNIPGCPGVGPKTAQKLLEEYGTIENLLEHTSEIKGALKQRLED---N 233

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E    S+ L  ++TDVPI    +     + N  ++ +  + LEF  LINRV  T   D+
Sbjct: 234 KEQIIFSKFLATIKTDVPIDFNKDEFARREINAEKISAIFEELEFRTLINRVLKT---DS 290

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV    NTT ++ I               Q    ++    ++S      +    LQ
Sbjct: 291 IPSHPVR---NTTTHEAI---------------QGDLFAELLPPVDSSSDTTTVNYSALQ 332

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +L   P    SY  +   K+I + +  L    S  F   T  +D   S+ + ++ +    
Sbjct: 333 ELKDIP---HSYHLVEEEKEILELISTLSNQESCCFDTETTGLDPIVSELVGMSFA---- 385

Query: 417 KDDTSFK-VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                FK  E  ++ +     +         K+++   + FFENE  LKIG NIKYD +V
Sbjct: 386 -----FKEGEAYYVPVPADFDE--------AKKLIDKFRPFFENEKILKIGQNIKYDIIV 432

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPI 530
           L +Y I +RG   D M+  Y+++     H++  +A+ +L Y      E++ ++ K+ + +
Sbjct: 433 LKKYDIHVRGKLFDTMIAHYLINP-ELRHNMDYMAETYLKYRTIHIDELIGAKGKNQLNM 491

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +   Q+ ++A E+++V L+L  +L   +  + L  ++  ++ P+I V++ ME TG+++
Sbjct: 492 RSLRPDQISDYACEDADVTLKLKRILEKAIEKQDLSKLFYEIELPLIYVLADMEFTGVRL 551

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D   L + S  ++  L ++E  I+ L   +FN++S KQ+G++LF KLK      KTKTGQ
Sbjct: 552 DTVALGEYSKTLTIELQNIESEIFKLGETEFNINSAKQVGEVLFDKLKIIDKPKKTKTGQ 611

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE I    +PI+  ILE+R L K+ STY D+LP  +  +  ++HT ++   T 
Sbjct: 612 YVTSEETLESIK-NTHPIVNKILEYRGLKKLLSTYIDALPLLVEPKDGKIHTSFNQTVTA 670

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+   G++IR++FI+       SADYSQIELRI+AH+++   + +
Sbjct: 671 TGRLSSTNPNLQNIPIRDAQGREIRKSFIADEGCLFFSADYSQIELRIMAHLSQDPSMVE 730

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  DIH   AA+I+ + I++V+  MRR AKT NF IIYGIS F LA +L IPR EA 
Sbjct: 731 AFNSGEDIHAATAAKIYKLKIDEVTSDMRRKAKTANFGIIYGISVFGLAERLTIPRGEAK 790

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +P + EY++K     R+  YVET+FGR+ +  +INS  +++R   ER AIN
Sbjct: 791 ELIDGYFETYPKVKEYMDKCITDAREKTYVETVFGRKRYLPDINSRNATVRGYAERNAIN 850

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM ++ K  E   + +KM+LQ+HDEL F V E EI    +I++  ME
Sbjct: 851 APIQGSAADIIKVAMNNIFKRFEKENIKSKMILQVHDELNFNVLENEIDKVQKIVIEEME 910

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L VPL+ +     NW E
Sbjct: 911 NA----YKLAVPLRADCGKGKNWLE 931


>gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 339/991 (34%), Positives = 542/991 (54%), Gaps = 72/991 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  LFL+D  + I+R +YA    P ++    G+ V+AI GF N L+ +++  R +    H
Sbjct: 9   QKRLFLLDAYALIFRGYYALIKNPRITSS--GMDVSAIMGFTNSLFDVIKRERPD----H 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    + R E + DYKANR + PE +   +P ++   +A  IP IE QG EADD+
Sbjct: 63  LAVAFDKGGSSARVEAFEDYKANRDETPEAIRIAIPHIQEILRAMHIPIIERQGVEADDL 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175
           I T +  AEKEGF V +++ DKD  QLVS    +Y   +     + + I+ WGIP     
Sbjct: 123 IGTLSKQAEKEGFKVYMVTPDKDYAQLVSENIFMYKPAR-----MGNGIEIWGIPEVQKR 177

Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
                PE+++    + GD+ DNIPG+PG+G KTA   +  YG++E +L N  ++K  K +
Sbjct: 178 FEVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIAAYGSMEGLLANTDKLK-GKMK 236

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           E ++E AE   LS+KL  +  D  +T   +   L + +   +    + LEF ++ ++   
Sbjct: 237 EKVIENAELGLLSKKLATIMLDCDVTFNAKDYELSEPDAEAVGKKFEELEFRRMKDQFIK 296

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
            +  +A   +   +    T  K +A           + S F   S  T+   S+ + +K 
Sbjct: 297 IFSGEAD--QGTQVSSTPTAKKAVASNA-----GAGQFSLFGGDSGATAAAVSDASTRKT 349

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                 K +Q+      Y K+ +    + ++Q L    S  F   T  +D   ++ + IA
Sbjct: 350 I-----KDTQH-----FYQKVDSPLARKLFIQNLNKQSSVCFDTETTGLDPLVAELVGIA 399

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S    K          +I       +         + ++  L+ FFEN    KIG N+K
Sbjct: 400 FSWEAGK--------GYYIPFPESKEE--------AQALIEELRPFFENTAIEKIGQNLK 443

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRK 525
           YD  VL +Y + ++G   D ML  Y+++     H++  +A+ +L+YT     + I K  K
Sbjct: 444 YDIKVLAKYNVKVKGKLFDTMLAHYLINPDM-RHNMDVLAETYLNYTPVSITELIGKKGK 502

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           +   +  +S     E+A+E++++ LQL      +L       +++ ++ P++ V++ ME+
Sbjct: 503 NQKSMRDVSVDDQTEYAVEDADITLQLKQHFEKELDEAGTRKLFDDIEIPLLRVLAAMEV 562

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAK 644
            GI +D   L+ +S +++ ++  L   I+  +GE+FN+ SPKQLG+ILF K+K      K
Sbjct: 563 EGINLDVSFLQSLSGDLNADIERLTSEIFAEAGEEFNIGSPKQLGEILFDKMKLVDKPKK 622

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQ+ +TA+D+      D+ II+ +L++R LSK+KSTY D+LP  +  +  RVHT Y 
Sbjct: 623 TKTGQY-STAEDVLSYLAKDHDIIQKVLDYRGLSKLKSTYVDALPEQV-AQDGRVHTDYM 680

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAK 763
                TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A +++
Sbjct: 681 QTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSE 740

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              + Q F +  DIH   AA++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  +
Sbjct: 741 EENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDL 800

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EA + I  Y+  +P +  Y+ +   F R+NGYV+T+  RR + + INS    +R   
Sbjct: 801 SRGEAKELIDNYYKSYPKLRNYMSELVEFARENGYVKTVLDRRRYLNGINSSNGVVRGAA 860

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+NAPIQGSAADI + AMI++ + LE+    TKMLLQ+HDELVF+VP +E+    ++
Sbjct: 861 ERNAVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVFDVPNDELDAIKEL 920

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   ME A      + VPL V + +  NW E
Sbjct: 921 IKTEMESA----FKMAVPLDVEVGLGQNWLE 947


>gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 923

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 342/985 (34%), Positives = 541/985 (54%), Gaps = 80/985 (8%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYRA+YA   +P ++ K  GL  +AI GF N L ++L         SH 
Sbjct: 2   DRLFLLDAYALIYRAYYAFIKSPRINSK--GLNTSAILGFVNTLEEVLNKEH----PSHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E YP+YKA R + PE +   +P+++   +A+ IP +E+ GFEADD+I
Sbjct: 56  GVAFDPAGPTFRHEAYPEYKAQREETPEAIRTAVPIIKDIIRAYRIPILEVAGFEADDVI 115

Query: 122 ATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP- 175
            T    A   G     +++ DKD  QLV+    +Y     +K    + ++ V +K+ I  
Sbjct: 116 GTLATQAAAHGNLETYMMTPDKDYGQLVNERVKMYRPKFGDKDFEIMGVKEVTEKFDISS 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA+ L+ ++G++EN+L +   +K    +  +  
Sbjct: 176 PMQVIDILGLMGDSSDNIPGCPGVGGKTASKLVNQFGSIENLLEHTDELK-GSLKTKVET 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + +T   S+ L  ++TDVPIT+ LE L  ++ +   L    + LEF  L+ R    +   
Sbjct: 235 HRDTIAFSKFLATIKTDVPITLDLEALTTKEPDAEALQRLFEDLEFRTLLER---KFSKK 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               EP                         + S F+  +D++ + +           + 
Sbjct: 292 QPTAEPGFF----------------------QGSLFAEFADESPEAS-----------KY 318

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             LS+Y   +  Y  I   +D Q+ +    T    S    T   D   +K + ++ S   
Sbjct: 319 SNLSKYKKEDFDYQLIETKEDRQRIIDLFVTKDFLSLDTETTGTDPISAKLVGLSFSV-- 376

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +++ +F V    I      +Q          +I++  K  +E+E  LKIG NIKYD +V
Sbjct: 377 -EENQAFYVP---IPQDFEEAQ----------KIVNEFKSVYEDERILKIGQNIKYDLMV 422

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPI 530
           L  YGI+++G   D M+  Y+L      H +  +A+ +L+Y     +E++  + K+   +
Sbjct: 423 LQNYGITLKGEIFDTMIAHYLLQP-ELRHGMDYLAEVYLNYQTIHIEELIGPKGKNQKNM 481

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +  SQV E+A E++++ L+L  +  PKL  E    ++  ++ P++ V++ ME  G+ I
Sbjct: 482 ADLPPSQVYEYACEDADITLKLKNVFEPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCI 541

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQ 649
           D + LK+ S   +K +  LEE I+ L+GE FN++SPKQ+G++LF KLK     K TKTGQ
Sbjct: 542 DTEALKETSTLYTKEMNRLEEEIHALAGEPFNIASPKQVGEVLFEKLKISEKPKKTKTGQ 601

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +PI++ ILE R L K+  TY D+LP  IN  T  +HT ++   T 
Sbjct: 602 YVTSEEVLETLRT-RHPIVEKILEHRGLKKLLGTYIDALPKLINPETGHIHTSFNQTITT 660

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIP++ + G++IR+AFI  P  +  SADYSQIELRI+AH++    + +
Sbjct: 661 TGRLSSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIE 720

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   AA+I+   +E+V+ + R  AKT NF IIYGI+ F LA ++ + R+EA 
Sbjct: 721 AFREGHDIHAATAAKIYKKPLEEVTREERSKAKTANFGIIYGITVFGLAERMNVSRAEAK 780

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +P + EY++K+    R+ GY ETI+ R+ +  +INS  + +R   ER AIN
Sbjct: 781 ELIDGYFTTYPKVKEYMQKSIETAREKGYTETIYHRKCYLRDINSHNAVVRGYAERNAIN 840

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AMI+++   +   + +KM+LQ+HDEL F V  EE     QI++  ME
Sbjct: 841 APIQGSAADIIKIAMIAIYHRFQKEHIRSKMILQVHDELNFSVYPEEKERVQQIVIEEME 900

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
           +A      ++VPL+ +     NW E
Sbjct: 901 RA----YTMQVPLEADYGWGRNWLE 921


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 341/983 (34%), Positives = 532/983 (54%), Gaps = 79/983 (8%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N LFL+D  + I+R++YA    P ++ K  GL  +AI GF N L +++     E    + 
Sbjct: 2   NKLFLLDAFALIFRSYYALIRAPRINSK--GLNTSAILGFVNTLHEIITKENPE----YL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E +P YKA R + PE +   +P+++    AF IP +E++GFEADD+I
Sbjct: 56  GVAFD-AGKTFRHEAFPPYKAQRQEPPEDIALSVPIIKEILHAFHIPILEVEGFEADDVI 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGI-PPE 177
            T    A  EG    +++ DKD  QL+     +Y        DI   + + +K+GI  PE
Sbjct: 115 GTLATKAGNEGVETYMLTPDKDYGQLIRKNVFMYRPRHGGGYDIVGEQEIAEKYGINKPE 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GDS DN PG PG+G KTA  L+ E+G+++ +L +  ++K  K RE +    
Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTAVKLINEFGSIDGLLEHTDQLK-GKMREKVEGAV 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++S+ L  +RTDVPI + LE L L+  +  +L      LEF  L N++         
Sbjct: 234 EDIKMSKFLATIRTDVPIELNLEALRLQQPDEQKLSEIFADLEFKTLANKI--------- 284

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   +N TE K  ++  E D    I +             NS+ + +    E L+ 
Sbjct: 285 --------LNKTEQKQKSVNVERDLFADIPS-------------NSQVSSENASFESLKT 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +         Y  I N ++ Q+     +T    S    T + DA  ++ + +  +  + K
Sbjct: 324 IKH------EYKLIDNQEEAQRICDFFKTKQILSLDTETTSTDAIEAELVGLCFAVEEHK 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                         + + +  +  K  L  + ++  K  +E+   LKIG NIKYD  VL 
Sbjct: 378 --------------AFYVAIPNDRKQAL--QYVNIFKSVYEDPSILKIGQNIKYDYEVLK 421

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS-RKSSIPIDK 532
            YG++++G   D ML  YVL      H++  +A+  L+Y     +E++ +  K    +  
Sbjct: 422 NYGVTLQGKMFDTMLAHYVLQP-ELRHNMDYMAETLLNYKTIHIEELIGAPGKHQKSMRD 480

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I+     E+  E++++ LQL  +L PKL    +  ++  ++ P+I V++ ME+ G+++D 
Sbjct: 481 IAPEDAYEYGAEDADITLQLRNVLEPKLKEVAMEALFWDIETPLIPVLADMELNGVRVDT 540

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWK 651
             L   +   ++ +  LE +IY+ +GE FN++SPKQ+GDILF KL+      KTKTGQ+ 
Sbjct: 541 ATLHDTAEIFTERMNRLERHIYEEAGETFNIASPKQVGDILFGKLQIMEKPKKTKTGQYV 600

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+ +    NPI+++IL  R L K+  TY ++LP  I+KRTQ +HT ++ A T TG
Sbjct: 601 TNEEVLQSLRA-KNPIVEDILAHRGLKKLLGTYVEALPKLIHKRTQHIHTSFNQALTATG 659

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++++ G++IR+ F+  P     SADYSQIELRI+AH++    + + F
Sbjct: 660 RLSSSDPNLQNIPVRSEDGKEIRKCFVPEPGCLFFSADYSQIELRIMAHLSGDENMIEAF 719

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AA+I+   I  V+P+ R+ AK  NF IIYGI+ + LA ++ I   EA   
Sbjct: 720 REGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYGITTYGLAQRMGIDNKEARML 779

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF  FP +  Y+E+ K   RQ GY  T+FGRR +  +INS   ++R   ER AINAP
Sbjct: 780 IEDYFTTFPKVKAYMEQAKEEARQKGYAVTLFGRRRYLPDINSKNGTVRGFAERNAINAP 839

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGS ADI + AMI + +  +   + +KM+LQ+HDEL F V  EE     +I++  M+ A
Sbjct: 840 IQGSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFSVYPEEKERVEKIVLEEMQGA 899

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
           C     L+VPL  +    NNW E
Sbjct: 900 C----QLKVPLTADAGWGNNWLE 918


>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
 gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
          Length = 923

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 344/989 (34%), Positives = 542/989 (54%), Gaps = 88/989 (8%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYRA+YA   +P ++ K  GL  +AI GF N L ++L         SH 
Sbjct: 2   DRLFLLDAYALIYRAYYAFIKSPRINSK--GLNTSAILGFVNTLEEVLNKEH----PSHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E YP+YKA R + PE +   +P+++   +A+ IP +E+ GFEADD+I
Sbjct: 56  GVAFDPAGPTFRHEAYPEYKAQREETPEAIRTAVPIIKDIIRAYRIPILEVAGFEADDVI 115

Query: 122 ATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP- 175
            T    A   G     +++ DKD  QLV+    +Y     +K    + ++ V +K+ I  
Sbjct: 116 GTLATQAAAHGNLETYMMTPDKDYGQLVNERVKMYRPKFGDKDFEIMGVKEVTEKFDISS 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA+ L+ ++G++EN+L +   +K      +I  
Sbjct: 176 PTQVIDILGLMGDSSDNIPGCPGVGGKTASKLVNQFGSIENLLEHTDELKG-----SIKT 230

Query: 236 YAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
             ET R     S+ L  ++TDVPIT+ LE L  ++ +   L    + LEF  L+ R    
Sbjct: 231 KVETHRDMIAFSKFLATIKTDVPITLDLEALTTKEPDAEALQRLFEDLEFRTLLER---K 287

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
           +     + EP                         + S F+  +D++ + +         
Sbjct: 288 FSKKQPSAEPGFF----------------------QGSLFAEFADESPEAS--------- 316

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             +   LS+Y   +  Y  I   +D  + +    T    S    T   D   +K + ++ 
Sbjct: 317 --KYSNLSKYKKEDFDYQLIETKEDRSRIIDLFVTKDFLSLDTETTGTDPISAKLVGLSF 374

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S    K++ +F V            QD        ++I++  K  +E+E  LKIG NIKY
Sbjct: 375 SV---KENQAFYVPI---------PQDPEE----AQKIVNEFKSVYEDERILKIGQNIKY 418

Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KS 526
           D +VL  YGI+++G   D M+  Y+L      H +  +A+ +L+Y     +E++  + K+
Sbjct: 419 DLMVLQNYGITLKGEIFDTMIAHYLLQP-ELRHGMDYLAEVYLNYQTIHIEELIGPKGKN 477

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
              +  +  SQV E+A E++++ L+L  +  PKL  E    ++  ++ P++ V++ ME  
Sbjct: 478 QKNMADLPPSQVYEYACEDADITLKLKNVFEPKLKEEGCYDLFREVEMPLMPVLAWMERN 537

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-T 645
           G+ ID + LK+ S   +K +  LEE I+ L+GE FN++SPKQ+G++LF KLK     K T
Sbjct: 538 GVCIDTEALKETSTLYTKEMNCLEEEIHALAGEPFNIASPKQVGEVLFEKLKISEKPKKT 597

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTGQ+ T+ + LE +    +PI++ ILE R L K+  TY D+LP  IN  T  +HT ++ 
Sbjct: 598 KTGQYVTSEEVLETLRT-RHPIVEKILEHRGLKKLLGTYIDALPKLINPETGHIHTSFNQ 656

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S  PNLQNIP++ + G++IR+AFI  P  +  SADYSQIELRI+AH++   
Sbjct: 657 TITTTGRLSSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDP 716

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            + + F    DIH   AA+++   +E+V+ + R  AKT NF IIYGI+ F LA ++ + R
Sbjct: 717 HMIEAFREGHDIHAATAAKVYKKPLEEVTREERSKAKTANFGIIYGITVFGLAERMNVSR 776

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +EA + I  YF  +P + EY++K+    R+ GY ETI+ R+ +  +INS  + +R   ER
Sbjct: 777 AEAKELIDGYFTTYPKVKEYMQKSIETAREKGYTETIYHRKCYLRDINSHNAVVRGYAER 836

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAPIQGSAADI + AMI++++  +   + +KM+LQ+HDEL F V  EE     QI++
Sbjct: 837 NAINAPIQGSAADIIKIAMIAIYRRFQKEHIRSKMILQVHDELNFSVYPEEKERVQQIVI 896

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME+A      ++VPL+ +     NW E
Sbjct: 897 EEMERA----YTMQVPLEADYGWGKNWLE 921


>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
 gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
          Length = 950

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 358/986 (36%), Positives = 541/986 (54%), Gaps = 92/986 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           LFL+DG + +YRAFYA         DG+P  A+ GF   L ++++  R +    + AV F
Sbjct: 37  LFLLDGMALVYRAFYALQQARMSTRDGVPTGAVFGFATSLLRIIEEYRPD----YLAVAF 92

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+E Y  YKANRP  P+ L+ QL  +R   +A GIP I + GFEADD+I T  
Sbjct: 93  DSPEKTFRHEKYKAYKANRPAPPDDLINQLDNIRELIRACGIPLIIMPGFEADDLIGTTA 152

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
              E +   V I++ DKD+ QLV     +    K+    E +    V +++G PPE+ + 
Sbjct: 153 RKFEAD-CQVFIVTPDKDMSQLVHDGVRILKPGKKQNEFELLGSREVAEQFGAPPEQFID 211

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L  LTGD+ DNIPG  GIG KTA+ LL++YG+LE I  N   +  K R +++  + E   
Sbjct: 212 LLTLTGDTSDNIPGAKGIGPKTASSLLKKYGSLEGIYANIDALTPKTR-QSLEAFREMMP 270

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           L R+LV +RTD+ + + LE L     +   L + L  LE   +  R+            P
Sbjct: 271 LVRELVTIRTDLDLPLTLEALHASKPDPEALFALLAKLELKSIAARL------------P 318

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS--EQTPQKLFLERLQKLS 359
            VL I+T                    S  SS  +  +  NS     PQ +         
Sbjct: 319 AVLQIDT--------------------SAASSSENAPAMANSVDPGDPQLI--------- 349

Query: 360 QYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
             P    S   ++++K+   + +  LE  G  +    T ++D F ++   I+ S    K 
Sbjct: 350 --PAGEGSEYHLIDSKEAFDKLLTLLENSGGFAVDTETTSLDTFTAELAGISCSV---KP 404

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +F V      L   T+             ++ LK   EN    K G N+KYD LVL +
Sbjct: 405 GEAFFVYFGTPGLDAKTT-------------VARLKPLLENPEIPKTGQNLKYDILVLKK 451

Query: 479 YGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQKWLS-----YTRKEILKSRKSSIPID 531
           YG+ +   GF D ML SYVL+   + H++  +A  +L      YT  E++ + K +I I 
Sbjct: 452 YGVELAPVGF-DTMLASYVLNP-EARHNLDDMAALYLGRQTTKYT--ELVGTGKQTIGIF 507

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           ++   ++ ++A +++++ L+L   L  +L    +LL V  +L+ P++ V++ ME  GI I
Sbjct: 508 EVEPRKLSDYACQDADIALRLRYSLEEQLEKTPELLEVCRKLEFPLVRVLADMEHKGISI 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L+Q+S +++  L +L E I++ +GE FN+ SPKQLG ILF  LK P+   TKTG +
Sbjct: 568 DTAHLEQLSIKVTGELATLTERIFEATGETFNIDSPKQLGHILFDVLKLPAKKATKTG-Y 626

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  Q LE++    +P+  ++LE+R L K+KSTY ++LP  IN  T RVHT ++ + T T
Sbjct: 627 STNVQVLEELAM-LHPVASDLLEYRSLQKLKSTYIEALPKMINPLTGRVHTSFNQSITAT 685

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIPI+T+LG++IRRAFI S P   L+SADYSQIELRI A ++    L +
Sbjct: 686 GRLSSSNPNLQNIPIRTELGKEIRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPMLIE 745

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N  DIH   A  IF  + ++++P MRR AK +NF ++YGI PF L+ +L IP+ EA 
Sbjct: 746 AFRNHEDIHAATARVIF--DTKEITPDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAK 803

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  Y  ++PG+   ++      ++ GYV T+ GRR +  ++NS  S+IR   ER  +N
Sbjct: 804 EIIDTYMAKYPGMFSSLQTIIEEAKKKGYVTTLMGRRRYVPDLNSANSNIRKAAERVTMN 863

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AADI + AM S+ + L+  +  + MLLQ+HDEL+FE+P +E     +++  +M 
Sbjct: 864 TPIQGTAADIIKFAMCSISRELKKGEFRSAMLLQVHDELLFEMPPDEEARLREMVERNMI 923

Query: 950 KACLPKINLR-VPLKVNIKVSNNWQE 974
           +A   K  L+ VP++V+     NW E
Sbjct: 924 EAA-SKCGLKNVPVEVDTGSGKNWLE 948


>gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
 gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
          Length = 963

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 347/996 (34%), Positives = 539/996 (54%), Gaps = 57/996 (5%)

Query: 1   MQKENH-LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
           M+K  H LFL+D  + IYRA +A    P ++ K  GL  +A+ GF N L ++LQ  +   
Sbjct: 1   MEKPIHKLFLLDAMALIYRAHFAFIKAPRITSK--GLNTSAVFGFTNTLLEVLQKEK--- 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             +H  V FD  A TFR+  +  YKA R   PE +   +PLV+   +   IP +E+ G+E
Sbjct: 56  -PTHIGVAFDTAAPTFRHVQFEAYKAQREAQPEDITVAIPLVKRLLRGMCIPILELDGYE 114

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKW 172
           ADDII T    A +EGF V +++ DKD  QLV     +Y         E + ++ ++ +W
Sbjct: 115 ADDIIGTIAKEASREGFEVYMMTPDKDYGQLVEQYIHIYKPAFLGKGAEVLGVQQILDRW 174

Query: 173 GIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            I   ++++ +  L GD++DNIPGIPG+G KTA  L+QEY  +EN++ +A  IK  K  E
Sbjct: 175 QIQRIDQVIDILGLMGDAVDNIPGIPGVGEKTAQKLIQEYDTIENLITHAGEIK-GKLGE 233

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-AT 290
            I E  + A LS++L  +   VP+    E L +   N   +      LEF  L  R+   
Sbjct: 234 KIRENFDKAVLSKQLATIDCKVPVPFDAEDLTICSPNAELIAELFDELEFKTLKTRILGG 293

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                A  + P          K    + +I  + T +  Q      Q + ++ +    +L
Sbjct: 294 QPGGSAGALSPRPASAQAPARKNAKGQLDIFGNPTEEIGQ------QPAAVSGDLADGEL 347

Query: 351 FLERLQ---KLSQYPINNDSYT-KIVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSK 405
             +  +     S+  I+N  +    V+T ++   +    ++  A  F   T ++D   ++
Sbjct: 348 TEDTSEIRIPTSKRTIDNTFHRYHTVDTPELMTSLAHYLSLQDAFCFDTETTSLDTTDAE 407

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + ++ S L          E  +I +     Q         +EI+ Y +  FENE+  KI
Sbjct: 408 LVGLSFSYL--------AGEAFYIPVPADRQQ--------AEEIVGYFRAVFENENIEKI 451

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL--- 521
           G NIKYD LVL  YGI + G   D ML  Y+L+  +  H +  +A  +L+Y    I    
Sbjct: 452 GQNIKYDMLVLKNYGIEVHGKLSDTMLAHYLLEPDKR-HGMDILAASYLNYEPVSITSLI 510

Query: 522 -KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K       +  ++  ++ ++A E++++  QL  +   +L       ++  ++ P+  V+
Sbjct: 511 GKKGGKQGNMRDVAIPEITQYAGEDADITFQLHSIFSRELPKVNAAKLFNEVEMPLTKVL 570

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           + ME TG+++D + LK++SA +  +L   E  IY+ +G+ FN+SSPKQLG++LF K+K  
Sbjct: 571 ASMENTGVRLDINALKEMSAVLESDLRQTESEIYEAAGQSFNISSPKQLGEVLFEKMKLI 630

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTGQ+ T  + L  +   ++ I + IL++R+L K+KSTY D+LP  ++ RT R+
Sbjct: 631 EKPKKTKTGQYATGEEILSDLEA-NHLIARKILDYRELQKLKSTYVDALPTMVSSRTGRI 689

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRIL 758
           HT Y+ A   TGRL+S  PNLQNIPI+T  G++IR+AF+      +++SADYSQIELRI+
Sbjct: 690 HTSYNQAVAATGRLSSTNPNLQNIPIRTPRGREIRKAFVPDSADFQILSADYSQIELRIM 749

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           A  +    + + F    DIH   A+++F V +E+V+  MRR +K +NF IIYGIS F LA
Sbjct: 750 AAFSGDASMTEAFNQGRDIHATTASKVFQVPLEEVTSDMRRKSKMVNFGIIYGISAFGLA 809

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L IPR EA++ I+ YF  FP +  Y++K  N  R+  YVETI GRR +  +INS   +
Sbjct: 810 QRLGIPRGEASEIIRAYFEEFPAVKGYMDKVVNDAREREYVETILGRRRYLPDINSRNQT 869

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAPIQGSAAD+ + AMI++H  +   KL ++M+LQ+HDELVF+    EI 
Sbjct: 870 NRGYAERNAINAPIQGSAADMIKVAMINIHDFMAKEKLKSRMILQVHDELVFDAHYSEID 929

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              + +   M  A    I + V ++  I V  NW E
Sbjct: 930 LLKERVDELMRNA----IPMAVRMETGIGVGANWLE 961


>gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
 gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 349/1008 (34%), Positives = 544/1008 (53%), Gaps = 91/1008 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M     +FLVD  + I+R +YA    P ++ K  G   +AI GF N L  +++  R    
Sbjct: 1   MSDNKRVFLVDAYALIFRGYYAFIKNPRINSK--GQDTSAIMGFMNSLLDVIKRER---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +  AV FD    T R E++ +YKANR + PE +   +P +    +A  IP +  +GFEA
Sbjct: 55  PNLLAVCFDKGGSTDRVEMFEEYKANRDETPEGIKTAIPYICQILEAMHIPIMVKEGFEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175
           DD+I T    AEKEG+   +++ DKD  QLVS    +Y  V           + WGIP  
Sbjct: 115 DDVIGTLAKQAEKEGYQTFMVTPDKDFAQLVSENIFMYRPV------FGGGYETWGIPEV 168

Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                   P +++    + GD+ DNIPG+PG+G KTA   L  YG++EN+  N   +K  
Sbjct: 169 QKKFEVTDPLQVIDYLGMMGDASDNIPGLPGVGDKTAKKFLAAYGSMENLFANTHELK-G 227

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K +E I    E   LS+KL  +  DVP+    +   L+  +  ++    + LEF +L + 
Sbjct: 228 KMKEKIEANQELGLLSKKLATIMLDVPVEFHAKDFELDAPDIDKVKEIFQELEFRRLTDN 287

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS-----QFSSLS------- 335
              T+  D+  I       N+T N     E    + +T  TS     QF+          
Sbjct: 288 FIKTFAEDSPAIG------NSTSNTS---EKPTSKTSTAPTSNAGAGQFNLFGGDPNETK 338

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDS--YTKIVNTKDIQQWVQKLETIGSASFK 393
           D TS I++               ++  + N S  Y  +      + +++ L    S  F 
Sbjct: 339 DGTSNIDT-------------AFTRRTVANTSHFYQSVAPGMATKLFIKNLMNQTSVCFD 385

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
             T  ++   ++ + IA S         ++    F        Q++       + I+  L
Sbjct: 386 TETTGLNPLTAELVGIAFS---------WETGKGFYLPFPEDKQEA-------QAIIEAL 429

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW 512
           + FFE E+  KIG N+KYD  VL +Y + ++G   D ML  Y+++     H++  +A+ +
Sbjct: 430 RCFFEAENIQKIGQNLKYDIKVLAKYNVEVKGPLFDTMLAHYLINPDMR-HNMDVLAETY 488

Query: 513 LSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           L+YT   I     K  K+ + +  +   +  E+A+E++++ LQL      +L       +
Sbjct: 489 LNYTPVSITELIGKKGKNQLSMRDVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQKL 548

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           ++ ++ P++ V++ ME+ GI +D+D L+ +S ++++++ +L   IYD++GE+FN++SPKQ
Sbjct: 549 FDDIEVPLLRVLAAMELEGINLDKDFLQSLSNDLNRDIEALVTKIYDVAGEEFNIASPKQ 608

Query: 629 LGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           LG ILF KLK      KTKTGQ+KT  +D+  +   D+ II+NILE+R L+K+KSTY D+
Sbjct: 609 LGIILFEKLKLVDKPKKTKTGQYKT-GEDILSVLAKDHEIIRNILEYRGLAKLKSTYVDA 667

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLI 746
           LP  + + T RVHT Y      TGRL+S  PNLQNIPI+T+ G+++R+AFI       L+
Sbjct: 668 LPLQVEESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFIPRNDDYTLL 727

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQIELRI+A ++K   + + F+N  DIH   A+++FGV IE+V+   R +AKT+NF
Sbjct: 728 AADYSQIELRIIAALSKEETMIEAFKNGEDIHASTASKVFGVPIEEVTRAQRSNAKTVNF 787

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            IIYG+S F L+ Q  + R EA + I  Y+  +P + +Y+ +  +F R NGYV+TI  RR
Sbjct: 788 GIIYGVSAFGLSNQTDLSRGEAKELIDTYYETYPKLKKYMSEQVHFARDNGYVKTILDRR 847

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  +INS  + +R   ER A+NAPIQGSAADI + AMI+++  LE     TKMLLQ+HD
Sbjct: 848 RYLKDINSRNAVVRGAAERNAVNAPIQGSAADIIKIAMINIYNKLEAGNYKTKMLLQVHD 907

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ELVF+V + E+   + +I   ME A      + VPL V +    NW E
Sbjct: 908 ELVFDVYKPELEKMTTLIKTEMENA----FKMEVPLDVEVDTGLNWLE 951


>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
 gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
          Length = 930

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 331/987 (33%), Positives = 532/987 (53%), Gaps = 81/987 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+DG +  YRA +A   +P+ + K  G   +AI GF   L +L+++       SH A+
Sbjct: 4   LFLLDGMALAYRAHFALIRSPIYTSK--GFNTSAIFGFTGTLIELIKSGNP----SHLAI 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A T R+ I+P+YKANR ++PE L   +P +    +AF IP +++ G+EADDII T
Sbjct: 58  VFDTSAPTERHRIHPEYKANREEMPEDLRSAMPHLDRIAEAFDIPVLKLDGYEADDIIGT 117

Query: 124 YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-E 177
             + AE EGF  + +++ DKD  QLV+    +Y   ++    E + ++ V  KWGI   +
Sbjct: 118 LAHRAEAEGFDEIYMVTPDKDFGQLVTERIKMYRPGRKGDGAEILGVDEVKAKWGIARVD 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GDS+DNIPG+PGIG KTA  LL +Y  +E +L +   +K  K++E + + A
Sbjct: 178 QVIDMLGLCGDSVDNIPGVPGIGPKTAEKLLAKYDTVEGLLDHVDELK-GKQQEKVRDNA 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDA 296
           + AR+S+ L  ++ DVPI +    L L      +++      EF  L  R+    +    
Sbjct: 237 DQARMSKLLATIQKDVPIAVEWSALELHAPEQSKIVPLFTEFEFRTLGKRIFGNDFSVQE 296

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           A  + V++                            S  D+ +   S +TP    L+ + 
Sbjct: 297 AATDLVLM----------------------------SEDDEQAAAASSETPAGGQLDLIP 328

Query: 357 KLSQYPINNDSYTKIV--NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            ++   + + ++T  +   T+ +Q+   +L   GS +F   T  ++   ++         
Sbjct: 329 AITFKKLADVTHTYAIADTTEQLQRLCTELREAGSFAFDSETTALNPRQAE--------- 379

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                         + LS  T   S      + E L  L+  F +    KIGHN+K+D  
Sbjct: 380 -------------LVGLSFATKAHSGWWVPASSEALDALRPLFADNSITKIGHNLKFDLA 426

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           +L      + G     ++++ L      H++ ++A+ +L Y+     E++   K   P+D
Sbjct: 427 ILAAQSCPVDGPCYDTMLAHALIEPEQRHNLDTLAEDYLRYSTIRFSELMPDAKKGSPLD 486

Query: 532 --KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +    + ++A E+++V LQLW   +PKL       ++  ++ P++ V+  ME  GI+
Sbjct: 487 YSSVDPQALADYATEDADVTLQLWECFKPKLEESGQASIFYEIETPLLPVLVAMESEGIR 546

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +  + L++    +   + +L++ +Y  +G +FNL+SPKQLG++LF +LK      KTKTG
Sbjct: 547 LCTETLEETGRVLEGQIATLKDAVYAAAGREFNLNSPKQLGEVLFNELKLVDKPKKTKTG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T  Q L  +    +PI+ ++LE+RQLSK+KSTY D+LPN ++  + RVHT Y    T
Sbjct: 607 QFATNEQVLSSL-APKHPIVADLLEYRQLSKLKSTYIDALPNAVDPVSGRVHTHYGQVQT 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP+++  G++IR+AF+      L++ADYSQIELRILA +     L 
Sbjct: 666 ATGRLSSNDPNLQNIPVRSAQGREIRKAFVPREGWTLLAADYSQIELRILAALTADEGLL 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSE 827
             F    DIH   AA+IF V+ + VS   R  AK +NF I YGIS F LA +L  + R+E
Sbjct: 726 TAFREGRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPYGISAFGLAQRLGTVSRTE 785

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF +FPGI  Y++  +   R  GYV T+ GRR +  +INS   +IR   ER A
Sbjct: 786 AQNIIDNYFAQFPGIPGYMQAQQESARAKGYVATVCGRRRYLRDINSGNGTIRAAAERNA 845

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           IN PIQG+AAD+ + AMI VH ++ D  L ++MLLQ+HDEL+F++   E +   Q++   
Sbjct: 846 INMPIQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAPGEESALRQLVTGG 905

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+ A    + L  P+++ I    NW E
Sbjct: 906 MQDA----LQLACPIEIEIGTGMNWLE 928


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 348/1006 (34%), Positives = 554/1006 (55%), Gaps = 74/1006 (7%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYRA+YA   +P ++ K  G   +A+ GF N L ++L    K+   +H 
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I
Sbjct: 56  GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177
            T    A K G    +++ DKD  QLV     +Y    T   E + IE V  K+ I  P 
Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K   + +      
Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-----V 230

Query: 238 ETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288
           ET R     S+ L  ++ DVPI + ++ L  E+ N   L    + +EF  LI+RV     
Sbjct: 231 ETNRKMIEFSKFLATIKIDVPIALNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRDK 290

Query: 289 ----ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
               A TY  DA   +P           G +       + + + S F   +       S 
Sbjct: 291 KSAFAGTY-PDATGNDPQ----GRNRTPGGSARQGNTPNGSGQLSLFGEPASNGESPASP 345

Query: 345 QTPQ-KLFLE------RLQKLSQYP-INNDSYT-KIVNTKDIQ-QWVQKLETIGSASFKI 394
            +PQ  LF E        +K S    ++N  Y  ++V+T++ + + +Q L T    S   
Sbjct: 346 SSPQGNLFAEFTDGGTESEKYSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDT 405

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T   D   ++ + ++ S  +         +  ++ +    ++         ++I++  +
Sbjct: 406 ETTGTDPITAELVGMSFSYAEN--------QAFYVPVPADRAE--------AQKIVNEFR 449

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513
             FE E  LK+G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L
Sbjct: 450 PAFEKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYL 508

Query: 514 SYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            Y     +E++  + K    +  +S   + ++A E+++V L+L  +L  +L       ++
Sbjct: 509 HYQTIHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLF 568

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             ++ P++ V++ ME  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+
Sbjct: 569 YEIEMPLVPVLTYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQV 628

Query: 630 GDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           G++LF KL+    AK TKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+L
Sbjct: 629 GEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDAL 687

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  INK T ++HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SA
Sbjct: 688 PLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSA 747

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRI+AH++  T + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF I
Sbjct: 748 DYSQIELRIMAHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGI 807

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYGIS F LA ++ + R EA + I  YF  +P I EY++K+ +  R  GY+ETIFGR+ +
Sbjct: 808 IYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRY 867

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS  S +R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL
Sbjct: 868 LPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDEL 927

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            F V  EE     +I++  ME A      ++VPL+ +    +NW E
Sbjct: 928 NFSVLPEEKEKVQKIVIEEMENA----YRMQVPLRADCGCGSNWLE 969


>gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13]
 gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13]
          Length = 901

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 344/975 (35%), Positives = 529/975 (54%), Gaps = 86/975 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DGSS++YRA++A P L R  +  P   I G  NML K +     E  +     +FD
Sbjct: 4   ILLIDGSSYLYRAYHALPDL-RNQNNEPSGVIYGVLNMLKKTM----AEYTSDFVVCVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN+IY DYKANRP +PE L  Q+  ++ A  A GI  + I+G EADD+I T   
Sbjct: 59  AKGKTFRNDIYSDYKANRPHMPEDLAVQIEPLKKAIHALGISMLSIEGVEADDVIGTLAE 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A K+   V I + DKDL QLV+    L +T+  E +D E V+KK+G+PPE++V    L 
Sbjct: 119 DAVKQDMDVIISTGDKDLAQLVNDNITLVNTMTNEVLDAEGVLKKFGVPPEQIVDYLTLI 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--KRRENILEYAETARLSR 244
           GD  DNIPG+  +G KTA   L E+G+L+NI+ N+ +I        ++ +++  T +   
Sbjct: 179 GDKADNIPGVDKVGPKTAVKWLNEFGDLDNIVANSDQISGAVGAHLKSAIDWLPTGK--- 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L+ ++ DV + +  ++ +  + +   L+   +   F+  + +     D D  N      
Sbjct: 236 SLITIKKDVEMNVLFDNFLKSEQDKKELLKIYQHYNFSSWLKKEFEDTDNDLTN------ 289

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
               T N  +  E   + D +I              +N+E                    
Sbjct: 290 ----TSNSEVQAEFNKNEDYSI--------------VNAES------------------- 312

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                      D+  W+ ++E          TD+++   ++ + ++++    K       
Sbjct: 313 -----------DLDYWITQIEQNNLCILDTETDSLNFMEARLVGVSLAYQAGK------- 354

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L     QD +        +L+ +K   ENE+  K+G NIKYD  VL  Y ++ +
Sbjct: 355 -ACYIPLQ---HQDMSIPQLPLNLVLNKIKSITENENITKVGQNIKYDMHVLKNYDVTFK 410

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G  ED M+MSYV+DS   SH +  +A+K+L +   + + ++      +  D++S      
Sbjct: 411 GPIEDTMIMSYVIDS-TESHGMDKLAKKYLDHDCISFESVVGKGVKQLTFDQVSIDDAYL 469

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V LQL+  L  K+I + KL ++Y+ ++ P +  +  +E  G+ I + +L   +
Sbjct: 470 YASEDADVTLQLYEHLNKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQN 529

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            ++   +L+LE   Y ++ + FNLSSPKQL +ILF K+K     KT TG   T+   LE+
Sbjct: 530 QDLGLKILNLENEAYQIAEQPFNLSSPKQLREILFDKMKIIPTKKTPTGTPSTSEDVLEE 589

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D+ + K ILE R LSK+K+TY D LP  IN  T+R+HT Y+ A  +TGRLAS EPN
Sbjct: 590 L-SHDHALPKVILEHRSLSKLKNTYTDKLPKMINLNTKRIHTSYNQAVAITGRLASSEPN 648

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIKT  G+K+R AFI+    +++S DYSQIELRI+AH++K   L   F  + DIHR
Sbjct: 649 LQNIPIKTKEGRKVREAFIANTDSQIVSCDYSQIELRIMAHLSKDPGLLDAFNQNEDIHR 708

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+ IF  N   VS + RR AK INF +IYG+S F L+  L I R+ A ++I +YF ++
Sbjct: 709 STASAIFNTNDASVSSEQRRFAKVINFGLIYGMSAFGLSQTLNIDRNSAKNFIDQYFEKY 768

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+  Y+++ K   ++ GYVET+FGRR+    INS     R   ERAAINAP+QG+AAD+
Sbjct: 769 PGVKNYMDQGKLVAKEQGYVETVFGRRLWVPLINSSNGIQRAAAERAAINAPMQGTAADL 828

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM +V + + D+KL T M++Q+HDELV EVP  E+     II   + K       L 
Sbjct: 829 IKMAMNNVQQWIGDNKLETLMIMQVHDELVLEVPNAEL----DIIKTEIPKIMSNVATLD 884

Query: 960 VPLKVNIKVSNNWQE 974
           VPL  ++    NW+E
Sbjct: 885 VPLIADLGSGINWEE 899


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 346/984 (35%), Positives = 548/984 (55%), Gaps = 74/984 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA +A    P ++ K  GL  +A  GF N L +++   +     SH  V
Sbjct: 9   LFLLDALALIYRAHFAFIKNPRITSK--GLNTSATLGFTNTLVEVITKEK----PSHIIV 62

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A T R+  +P YK +RP  PE +   +P V+   +AF IP + ++G+EADDII T
Sbjct: 63  AFDTGAPTHRHTAFPAYKEHRPSQPEDITVAIPYVKKILKAFRIPVLLLEGYEADDIIGT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP-EK 178
               A  +GF V +++ DKD  QLV     +Y           +D + V++KWGI   ++
Sbjct: 123 LARQAAVQGFEVYMMTPDKDFAQLVDDHIYIYKPAFMGNGVAILDRQAVLEKWGISNVDQ 182

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  L AL GD++DNIPGIP IG KTA  L+Q++G LEN+L NA ++   K +EN+++YA+
Sbjct: 183 IRDLLALQGDAVDNIPGIPSIGIKTAQKLIQQFGTLENLLANADQLT-GKLQENVVKYAQ 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS++L  + T+VPI    E    +  +   L    + LEF  L  R+    +     
Sbjct: 242 QGILSKELATIHTEVPIQFDAEESRYQGPDPVALKEIFQELEFNSLTRRLLGEDNY---- 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                   NT    G          T      F+     T++  S      ++L+     
Sbjct: 298 --------NTKRTPG----------TQANLFDFTPTDQPTAETAS------VYLDPAPFR 333

Query: 359 SQYPINNDSYTKIVNTKDIQQ-WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           + Y   +  Y  +++T  ++Q  +  L+   +  F   T ++D + ++ + I+ +     
Sbjct: 334 NIYTTKHQYY--LIDTPSLRQNLINYLKLQDTFCFDTETTSLDPYQAQLVGISFA----- 386

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
               +  E  ++ +          +    + I+   +   E+    K+G N+KYD L+L 
Sbjct: 387 ---YYPGEAYYVPIP--------AERKAAQAIIEEFRPLLESTTQCKVGQNLKYDNLILR 435

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            YGI +     D M+  Y++   +  H++ +IA+ +L+Y     + ++ SRKS+    ++
Sbjct: 436 TYGIEVAPPIFDTMVAHYLVAPDKP-HNMNAIAESYLNYAPIPIEALIGSRKSTQKSMRM 494

Query: 534 SDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            D + V+E+A E++++ LQL  LL   +  E L  ++  ++ P++ V++ ME  G+QID 
Sbjct: 495 VDVELVKEYACEDADITLQLKRLLELNIKQENLSKLFYEIEIPLVQVLTAMEYQGVQIDT 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWK 651
            +L+++S  +   L +LE+ I+ L+G  FN+SSPKQLG+ILF KLK      KTK+GQ+ 
Sbjct: 555 QVLREISVTLGTELAALEKEIHRLAGHAFNISSPKQLGEILFDKLKIAGNNKKTKSGQYA 614

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    L  +   D+PI  NIL++R+L K+KSTY D+L + I+    +VHT Y+     TG
Sbjct: 615 TGELVLADL-TKDHPIAANILDYRELQKLKSTYVDALIDLISPFDGKVHTSYNQTVVTTG 673

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIPI+T+ G+ IR+AF+ S P   L+SADYSQIELRI+A  ++   + + 
Sbjct: 674 RLSSTNPNLQNIPIRTEKGRAIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIEA 733

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIH   A+++F V +E+V   MRR AKT NF IIYGIS F LA +L I RSEA  
Sbjct: 734 FKAGKDIHTATASKLFKVPLEQVDESMRRQAKTANFGIIYGISGFGLAQRLGISRSEAIA 793

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I+ YF  F  I  Y+++     R+ GYV T+ GR+ +  +INS  S++R  +ER AIN 
Sbjct: 794 TIQAYFQEFHAIKAYMDRVIGQAREQGYVTTLMGRKRYLRDINSRNSTLRGFDERNAINT 853

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AA++ + AM+ +++ L+  KL +K++LQ+HDELVF+VP+ EI    + + + M K
Sbjct: 854 PIQGTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHDELVFDVPQHEIEIMREHVAYFM-K 912

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
             LP     VP++V I +  NW+E
Sbjct: 913 NSLPLAG--VPVEVQIGLGKNWEE 934


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 343/1001 (34%), Positives = 552/1001 (55%), Gaps = 64/1001 (6%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYRA+YA   +P ++ K  G   +A+ GF N L ++L    K+   +H 
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I
Sbjct: 56  GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177
            T    A K G    +++ DKD  QLV     +Y    T   E + IE +  K+ I  P 
Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEIKAKFDIQSPA 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILE 235
           +++ +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K   K + E   E
Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKAKVETNRE 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV------- 288
             E    S+ L  ++ DVPIT+ ++ L  E+ N   L    + +EF  LI+RV       
Sbjct: 236 MIE---FSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKS 292

Query: 289 --ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
             A TY     N     L       +G A +  +  D + + S F   +       S  +
Sbjct: 293 AFAGTYTDATGND----LQGRNRTPEGSARQGNMP-DGSEQLSLFGEPASNGKSPASPSS 347

Query: 347 PQ-KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           PQ  LF E   + ++    ++ Y+ +    +++   Q ++T          +        
Sbjct: 348 PQGNLFAEFTDRGTE----SEKYSNLACLDNLKYDYQLIDT---------EEKRSELLQN 394

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFEN 459
            +   I +LD +   +  +    + +S   +++           T  ++I++  +  FE 
Sbjct: 395 LLTKEIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEK 454

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR- 517
           E  LK+G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y   
Sbjct: 455 EGALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTI 513

Query: 518 --KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
             +E++  + K    +  +S   + ++A E+++V L+L  +L  +L       ++  ++ 
Sbjct: 514 HIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P++ V++ +E  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF
Sbjct: 574 PLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLF 633

Query: 635 TKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            KL+    AK TKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  IN
Sbjct: 634 DKLRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLIN 692

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
           K T ++HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQI
Sbjct: 693 KETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQI 752

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+AH++    + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS
Sbjct: 753 ELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGIS 812

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F LA ++ + R EA + I  YF  +P I EY++K+ +  R+ GY+ETIFGR+ +  +IN
Sbjct: 813 VFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDIN 872

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S  S +R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL F V 
Sbjct: 873 SRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVL 932

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EE     +I++  ME A     +++VPL+ +    +NW E
Sbjct: 933 PEEKEKVQKIVIEEMENA----YHMQVPLRADCGWGSNWLE 969


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 348/1006 (34%), Positives = 554/1006 (55%), Gaps = 74/1006 (7%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYRA+YA   +P ++ K  G   +A+ GF N L ++L    K+   +H 
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I
Sbjct: 56  GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177
            T    A K G    +++ DKD  QLV     +Y    T   E + IE V  K+ I  P 
Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K   + +      
Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-----V 230

Query: 238 ETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288
           ET R     S+ L  ++ DVPI + ++ L  E+ N   L    + +EF  LI+RV     
Sbjct: 231 ETNRKMIEFSKFLATIKIDVPIALNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRDK 290

Query: 289 ----ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
               A TY  DA   +P           G +       + + + S F   +       S 
Sbjct: 291 KSAFAGTY-TDATGNDPQ----GRNRTPGGSARQGNTPNGSGQLSLFGEPASNGESPASP 345

Query: 345 QTPQ-KLFLE------RLQKLSQYP-INNDSYT-KIVNTKDIQ-QWVQKLETIGSASFKI 394
            +PQ  LF E        +K S    ++N  Y  ++V+T++ + + +Q L T    S   
Sbjct: 346 SSPQGNLFAEFTDGGTESEKYSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDT 405

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T   D   ++ + ++ S  +         +  ++ +    ++         ++I++  +
Sbjct: 406 ETTGTDPITAELVGMSFSYAEN--------QAFYVPVPADRAE--------AQKIVNEFR 449

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513
             FE E  LK+G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L
Sbjct: 450 PAFEKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYL 508

Query: 514 SYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            Y     +E++  + K    +  +S   + ++A E+++V L+L  +L  +L       ++
Sbjct: 509 HYQTIHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLF 568

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             ++ P++ V++ ME  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+
Sbjct: 569 YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQV 628

Query: 630 GDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           G++LF KL+    AK TKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+L
Sbjct: 629 GEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDAL 687

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  INK T ++HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SA
Sbjct: 688 PLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSA 747

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRI+AH++  T + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF I
Sbjct: 748 DYSQIELRIMAHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGI 807

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYGIS F LA ++ + R EA + I  YF  +P I EY++K+ +  R  GY+ETIFGR+ +
Sbjct: 808 IYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRY 867

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS  S +R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL
Sbjct: 868 LPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDEL 927

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            F V  EE     +I++  ME A      ++VPL+ +    +NW E
Sbjct: 928 NFSVLPEEKEKVQKIVIEEMENA----YRMQVPLRADCGWGSNWLE 969


>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
 gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
          Length = 949

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 350/985 (35%), Positives = 548/985 (55%), Gaps = 58/985 (5%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFLVD  + IYRA+YA    P ++ K  GL  +AI GF N L  +L+  +     +H AV
Sbjct: 4   LFLVDAYAIIYRAYYAFIRNPRVNSK--GLNTSAIFGFVNTLEDVLKREK----PTHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R   PE +   +P+++   +A+ IPA+EI G+EADD+I T
Sbjct: 58  AFDPKGKTFRHEAYEQYKAQREATPEDIRLAVPIIKNLIKAYNIPALEIPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIPP-EKM 179
               AE+ GF V +++ DKD  QLVS    +Y    T   E +  + V  K+ +   E++
Sbjct: 118 MAKKAEQAGFEVFMLTPDKDYGQLVSDHIFMYRPKHTGGFETMGPDEVKAKYDLDSHEQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L GD+ DNIPG PG+G KTA  LL+E+G+++ +L     +K    +  I E  E 
Sbjct: 178 IDLLGLMGDASDNIPGCPGVGEKTAVKLLKEFGSIDTLLSRTGELK-GALKTKIEENKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              SR L  ++ DVPI    + L +   N   L +    LEF  +  ++AT +     + 
Sbjct: 237 IIFSRFLATIKVDVPIDFDEKSLEIVPRNETELRALFDELEFRTMSAKLATPFSSFPPDQ 296

Query: 300 E-PVVLDINTTENKGIAIETEI---DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             P +  +       +++  E    D   T K S  +   +Q   +++        ++ L
Sbjct: 297 PLPSIRQVKPKPAGQMSLFDEAESNDVKPTEKQSDAAPADEQQVVVSTSG------MKGL 350

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +    +  D+  K  N    Q ++QK     S  F   T  +D F S  + ++    +
Sbjct: 351 ENIPHKYVLIDTKVKRSNLIS-QLFIQK-----SVCFDTETTGLDMFTSDLVGMSFCFAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    E  ++ L     +D T     +KE+L   K FFEN+   KIG N+K+D L+
Sbjct: 405 G--------EAYYVSLP----EDKTE----SKEVLREFKAFFENDRIEKIGQNMKFDLLM 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPI 530
           L +YGI ++G   D M+  Y++      H +  +A+ +L+Y     ++++ ++ K+   I
Sbjct: 449 LWQYGIELKGKLFDTMIAHYLVQP-ELRHGMDYLAEIYLNYRTIHFEDLVGAKGKNQADI 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +  +++ ++A E+++V  +L  +L  +L  + L +++  ++ P++ V++ ME TG++I
Sbjct: 508 RTVDINKLCDYAAEDADVTFRLKQILEKELKADALENLFYEIEMPLMQVLATMEHTGVRI 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQ 649
           D + L+Q S  ++  +L LE+ I+ L+G +FN+SSP Q+G+ILF +LK    AK TKTGQ
Sbjct: 568 DSEALRQSSVILTDEMLKLEKEIHQLAGYEFNVSSPMQVGEILFDRLKLDDKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+   LE++    +PII  IL++R L K+ STY D+LP  I+  T +VHT Y+     
Sbjct: 628 YSTSEDILEKLQS-KHPIIGKILDYRGLKKLLSTYIDALPQLISPITGKVHTSYNQTVAA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+   G++IR+AFI        SADYSQIELRI+AH++    + +
Sbjct: 687 TGRLSSTNPNLQNIPIRDAQGKEIRKAFIPDADCLFFSADYSQIELRIMAHLSGDKNMLE 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  DIH   AA+I+ + +E+V+  MRR AKT NF IIYGIS F L+ +L IPR+EA 
Sbjct: 747 AFNSGHDIHTATAAKIYKIPLEEVTSDMRRKAKTANFGIIYGISVFGLSDRLSIPRAEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I+ YF  +P + +Y++      ++ GYVET+ GR+    +INS  S +R   ER AIN
Sbjct: 807 ELIEGYFATYPDVKKYMDNAIQKAKEMGYVETLLGRKRFLPDINSQNSIVRGFAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQG+AADI + AM+ +   LE+  L  KM +Q+HDEL F VP+ E+    + ++  ME
Sbjct: 867 APIQGTAADIIKIAMVRIQNRLENESLQAKMTMQVHDELNFTVPKNELEALQKAVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A    I L+VPL  +  V  NW E
Sbjct: 927 NA----IKLQVPLIADCGVGANWLE 947


>gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 964

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 353/990 (35%), Positives = 545/990 (55%), Gaps = 77/990 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M + + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 30  MNQNSKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 83

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 84  PTHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 143

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173
           DD+I T    A K+G    +++ DKD  QLV+    +Y     +K    + IE V  K+ 
Sbjct: 144 DDVIGTLATEAGKQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGIEQVKAKFD 203

Query: 174 I-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           I  P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + 
Sbjct: 204 IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK- 262

Query: 233 ILEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
                ET R     S+ L  ++ DVPI + +  L+ E  +   L    + LEF  L+ R+
Sbjct: 263 ----VETNREMIIFSKFLATIKIDVPIQLDMNSLVREQADEEALRKIFEELEFRTLMERI 318

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
              +  +++        + + EN            + I+ + F   +  T    +E+  +
Sbjct: 319 ---FKKESSPSPSPAGPLFSQEN------------SPIQGNLFEEFTPDTP---TEE--K 358

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           K  LE L  L+        Y  I      Q+ ++KL T    +    T   D   ++ + 
Sbjct: 359 KSNLESLNSLTY------DYQLIDTESKRQEIIKKLLTSEILALDTETTGTDPMDAELVG 412

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           ++ S  +         +  +I +         G+   TK I+   +  F+N+  LK+G N
Sbjct: 413 MSFSIAEN--------QAFYIPVPA-------GREEATK-IVREFESVFKNDKSLKVGQN 456

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
           IKYD LVL  YGI +RG   D M+  YVL      H++  +A+ +L Y     +E++  R
Sbjct: 457 IKYDMLVLQNYGIEIRGRLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGPR 515

Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            K    +  +S   V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +
Sbjct: 516 GKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVNI 575

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+++D + LKQ S   +  L S+E+ IY+L+GE+FN++SPKQ+G+ILF KLK    A
Sbjct: 576 ESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEEFNIASPKQVGEILFDKLKIVEKA 635

Query: 644 K-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           K TKTGQ+ T+ + LE +    + +I  ILE+R L K+ STY D+LP  IN RT R+HT 
Sbjct: 636 KKTKTGQYVTSEEVLESLR-NKHDVIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTS 694

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH++
Sbjct: 695 FNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLS 754

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   +   F +  DIH   AA+I+ V+I++V+  MRR AKT NF IIYGIS F LA ++ 
Sbjct: 755 KDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMN 814

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R EA + I  YF  +P +  Y++K+    R++GYVETIF R+    +INS  + +R  
Sbjct: 815 VDRKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGY 874

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAPIQGSAADI + AM  +++  +   L  KM+LQ+HDEL F VP +E     Q
Sbjct: 875 AERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKEIVEQ 934

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +++  MEKA      + VPLK +     NW
Sbjct: 935 VVIEEMEKAY----RMHVPLKADCGWGTNW 960


>gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
 gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
          Length = 938

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 334/986 (33%), Positives = 543/986 (55%), Gaps = 75/986 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+DG +  YRAF+A   + +      G P   + GF ++L +LL+  + E    + AV
Sbjct: 5   LYLIDGHALAYRAFFALTTSGMRLSTASGEPTAGVYGFASVLLRLLEQDKPE----YLAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR++IY +YKA R K+P+ L  Q+  +R     FG P +E+ G+EADDIIA+
Sbjct: 61  AFDG-GYSFRDQIYSEYKATRAKMPDDLRMQMERIRELVDVFGFPRLELNGYEADDIIAS 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTC--LYDTVKEEKIDI---EHVIKKWGIPPEK 178
             + A K+GF V II+ D+DL+QLV       L  +   E  D    E V    GI P++
Sbjct: 120 IAHQAVKQGFGVKIITGDRDLLQLVDERIAVNLAGSKLSEARDFVRQEDVQAYLGIRPDQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +V  +AL GD  DNIPG+ GIG KTA  LL++Y +LE+I  +   +  K R + + E  E
Sbjct: 180 VVDFKALAGDPSDNIPGVRGIGEKTALALLKDYAHLEDIYAHLDDLPAKVR-QKLEEGRE 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +SR+L  ++ D+ IT+ L     +     +++ F + +EF  LI R+   +   AA+
Sbjct: 239 MAFMSRELATIKRDLHITLELAQARTDAIPVEKVLDFFRRMEFRSLITRMEKIFGISAAS 298

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P  + +   E   I               Q S   ++  ++                 
Sbjct: 299 A-PQQVPLIPPEPTSIG--------------QLSLFGEEIVRVG---------------- 327

Query: 359 SQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
              P  +D  T IVNT + + +   KL      +    T + D  +   + I+++    +
Sbjct: 328 --LPPQHDLNTVIVNTPETLAELCAKLAQAEWIALDTETTSTDPLNGALVGISLAV---E 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
             T + +    +          TG+  L  E I   L  F  +    K+G N+KYD L L
Sbjct: 383 PGTGYYLPVGHL----------TGEPQLPLESIRDALAPFLGDPRKPKVGQNLKYDLLAL 432

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS--YTR-KEILKSRKSSIPIDK 532
              G+  +G   D +L  +++D    +  +  +A+++L    TR +E++ + K+   + +
Sbjct: 433 RLAGMEAQGLAFDTLLAEWLVDPASRALGLKEMAERYLGVQMTRIEELIGTGKNQRTMAQ 492

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +S +QV  +A  ++ + L+L  +L  +++   +  +++ ++ P++ V++ ME  GI +D 
Sbjct: 493 VSVAQVAPYAAADAEITLRLKPILEERMLKAGVTRLFQDVEMPLVPVLADMEWNGILLDV 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT--GQ 649
             L+++  E+S+ L  +E+ IY L G  FN++S +QL  +LF +L+  P   + KT  G 
Sbjct: 553 PFLQRMGVELSQRLAEIEKEIYALVGHPFNINSTQQLSRVLFEELRLEPPDRRKKTSAGL 612

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+A+ LE++  G +P++  ILE R+LSK+KSTY D+LP  +N RT RVHT ++   ++
Sbjct: 613 YSTSAEVLEELR-GRHPVLDLILENRELSKLKSTYVDALPQQVNPRTGRVHTRFNQTGSV 671

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS +PNLQNIP +TDLG+++R AFI+     L+S DYSQIELRI+AH+A    +  
Sbjct: 672 TGRLASSDPNLQNIPTRTDLGRQVRNAFIADEGWVLLSVDYSQIELRIVAHVANDEAMLA 731

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   AA I+GV +E V+ +MRRHAK INF +IYG+S F L+    +  +EA 
Sbjct: 732 AFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMSAFGLSRSADLTLAEAE 791

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS-SIRNINERAAI 888
           +++K YF +FPG+  +++  +    + GYVET+ GRR ++  + +P + +++   ER AI
Sbjct: 792 NFVKAYFEQFPGVKRFLDDLRRRAAREGYVETLLGRRRYFPNLKNPANPALKAREEREAI 851

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI + AMI + ++L       ++LLQ+HDELV EVP EE+   ++++ H M
Sbjct: 852 NAPIQGTAADIIKLAMIRLPEALRAAGSRARLLLQVHDELVLEVPREEMPGTAKLVQHVM 911

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A      L++PL    +   NW E
Sbjct: 912 ETAY----PLQIPLTTEARWGKNWGE 933


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 353/990 (35%), Positives = 545/990 (55%), Gaps = 77/990 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M + + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 7   MNQNSKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 61  PTHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173
           DD+I T    A K+G    +++ DKD  QLV+    +Y     +K    + IE V  K+ 
Sbjct: 121 DDVIGTLATEAGKQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGIEQVKAKFD 180

Query: 174 I-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           I  P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + 
Sbjct: 181 IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK- 239

Query: 233 ILEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
                ET R     S+ L  ++ DVPI + +  L+ E  +   L    + LEF  L+ R+
Sbjct: 240 ----VETNREMIIFSKFLATIKIDVPIQLDMNSLVREQADEEALRKIFEELEFRTLMERI 295

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
              +  +++        + + EN            + I+ + F   +  T    +E+  +
Sbjct: 296 ---FKKESSPSPSPAGPLFSQEN------------SPIQGNLFEEFTPDTP---TEE--K 335

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           K  LE L  L+        Y  I      Q+ ++KL T    +    T   D   ++ + 
Sbjct: 336 KSNLESLNSLTY------DYQLIDTESKRQEIIKKLLTSEILALDTETTGTDPMDAELVG 389

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           ++ S  +         +  +I +         G+   TK I+   +  F+N+  LK+G N
Sbjct: 390 MSFSIAEN--------QAFYIPVP-------AGREEATK-IVREFESVFKNDKSLKVGQN 433

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
           IKYD LVL  YGI +RG   D M+  YVL      H++  +A+ +L Y     +E++  R
Sbjct: 434 IKYDMLVLQNYGIEIRGRLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGPR 492

Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            K    +  +S   V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +
Sbjct: 493 GKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVNI 552

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+++D + LKQ S   +  L S+E+ IY+L+GE+FN++SPKQ+G+ILF KLK    A
Sbjct: 553 ESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEEFNIASPKQVGEILFDKLKIVEKA 612

Query: 644 K-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           K TKTGQ+ T+ + LE +    + +I  ILE+R L K+ STY D+LP  IN RT R+HT 
Sbjct: 613 KKTKTGQYVTSEEVLESLR-NKHDVIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTS 671

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH++
Sbjct: 672 FNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLS 731

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   +   F +  DIH   AA+I+ V+I++V+  MRR AKT NF IIYGIS F LA ++ 
Sbjct: 732 KDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMN 791

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R EA + I  YF  +P +  Y++K+    R++GYVETIF R+    +INS  + +R  
Sbjct: 792 VDRKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGY 851

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAPIQGSAADI + AM  +++  +   L  KM+LQ+HDEL F VP +E     Q
Sbjct: 852 AERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKEIVEQ 911

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +++  MEKA      + VPLK +     NW
Sbjct: 912 VVIEEMEKAY----RMHVPLKADCGWGTNW 937


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 341/999 (34%), Positives = 549/999 (54%), Gaps = 60/999 (6%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYRA+YA   +P ++ K  G   +A+ GF N L ++L    K+   +H 
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +EI G+EADD+I
Sbjct: 56  GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEIPGYEADDVI 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177
            T    A K G    +++ DKD  QLV     +Y    T   E + IE V  K+ I  P 
Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K   + + +    
Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-VEANR 234

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV--------- 288
           +    S+ L  ++ DVPIT+ ++ L  E+ N   L    + +EF  LI+RV         
Sbjct: 235 KMIEFSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKSAF 294

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
           A TY     N     L       +G A +  +  D + + S F   +       S  +PQ
Sbjct: 295 AGTYTDATGND----LQGRNRTPEGSARQGNMP-DGSGQLSLFGEPASNGKSPASPSSPQ 349

Query: 349 -KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
             LF E     +     ++ Y+ +    +++   Q ++T          +         +
Sbjct: 350 GNLFAE----FTDGGTESEKYSNLACLDNLKYDYQLIDT---------EEKRSELLQNLL 396

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEH 461
              I +LD +   +  +    + +S   +++           T  ++I++  +  FE E 
Sbjct: 397 TKEIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEG 456

Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
            LK+G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y     
Sbjct: 457 ALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHI 515

Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
           +E++  + K    +  +S   + ++A E+++V L+L  +L  +L       ++  ++ P+
Sbjct: 516 EELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEMPL 575

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V++ +E  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF K
Sbjct: 576 VPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDK 635

Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           L+    AK TKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  INK 
Sbjct: 636 LRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKE 694

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T ++HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIEL
Sbjct: 695 TGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIEL 754

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH++    + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS F
Sbjct: 755 RIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF 814

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA ++ + R EA + I  YF  +P I EY++K+ +  R+ GY+ETIFGR+ +  +INS 
Sbjct: 815 GLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSR 874

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            S +R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL F V  E
Sbjct: 875 NSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPE 934

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E     +I++  ME A     +++VPL+ +    +NW E
Sbjct: 935 EKEKVQKIVIEEMENA----YHMQVPLRADCGWGSNWLE 969


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 340/999 (34%), Positives = 549/999 (54%), Gaps = 60/999 (6%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYRA+YA   +P ++ K  G   +A+ GF N L ++L    K+   +H 
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I
Sbjct: 56  GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177
            T    A K G    +++ DKD  QLV     +Y    T   E + IE V  K+ I  P 
Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K   + + +    
Sbjct: 176 QIIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-VEANR 234

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV--------- 288
           +    S+ L  ++ DVPIT+ ++ L  E+ N   L    + +EF  LI+RV         
Sbjct: 235 KMIEFSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKSAF 294

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
           A TY     N     L       +G A +  +  D + + S F   +       S  +PQ
Sbjct: 295 AGTYTDATGN----DLQGRNRTPEGSARQGNMP-DGSGQLSLFGEPASNGKSPASPSSPQ 349

Query: 349 -KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
             LF E     +     ++ Y+ +    +++   Q ++T          +         +
Sbjct: 350 GNLFAE----FTNGGTESEKYSNLACLDNLKYDYQLIDT---------EEKRSELLQNLL 396

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEH 461
              I +LD +   +  +    + +S   +++           T  ++I++  +  FE E 
Sbjct: 397 TKEIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEG 456

Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
            LK+G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y     
Sbjct: 457 ALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHI 515

Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
           +E++  + K    +  +S   + ++A E+++V L+L  +L  +L       ++  ++ P+
Sbjct: 516 EELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEMPL 575

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V++ +E  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF K
Sbjct: 576 VPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDK 635

Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           L+    AK TKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  INK 
Sbjct: 636 LRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKE 694

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T ++HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIEL
Sbjct: 695 TGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIEL 754

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH++    + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS F
Sbjct: 755 RIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF 814

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA ++ + R EA + I  YF  +P I EY++K+ +  R+ GY+ETIFGR+ +  +INS 
Sbjct: 815 GLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSR 874

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            S +R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL F V  E
Sbjct: 875 NSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPE 934

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E     +I++  ME A     +++VPL+ +    +NW E
Sbjct: 935 EKEKVQKIVIEEMENA----YHMQVPLRADCGWGSNWLE 969


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
          Length = 932

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 334/982 (34%), Positives = 533/982 (54%), Gaps = 78/982 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA+YA   +P ++ K  G   +AI GF N L  +L    K+   +H  +
Sbjct: 13  LFLLDAYALIYRAYYALIKSPRINSK--GFNTSAILGFVNTLEDVL----KKENPTHIGI 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E YP+YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I T
Sbjct: 67  AFDPAGPTFRHEAYPEYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178
               A K G    +++ DKD  QLV     +Y     +K    + +E V  K+ I  P +
Sbjct: 127 LATEAGKRGITTYMMTPDKDYGQLVGENVFMYRPRHNDKAFEVMGVEEVKNKYAIQSPLQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L  L GD+ DNIPG PG+G KTA  L+ ++GN+EN+L +  ++K    R  + E  +
Sbjct: 187 VIDLLGLMGDASDNIPGCPGVGEKTAQKLIAQFGNIENLLAHTDQLK-GALRTKVEENRK 245

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               SR L  ++TDVP+ + ++ L  E  +   L    + LEF  L+ R+      +   
Sbjct: 246 QIEFSRFLATIKTDVPLPLDMDALKRESPDEEELRKIFQELEFRTLLERIFKEKPKETPA 305

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P   D+                        F   + +T+       P+K  L  L  L
Sbjct: 306 ATPGQGDL------------------------FGFFTPETT-----SEPEKTNLATLHTL 336

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                 N +Y  + N + + Q +Q + T    S    T + D   ++ + ++ S  +   
Sbjct: 337 ------NCNYQLVDNEEKLSQLLQNIVTQSVLSLDTETTSTDPIRAELVGMSFSYAEN-- 388

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 +  ++ +    S+         ++I+   +  FEN   +K+G NIKYD LVL  
Sbjct: 389 ------QAFYVPVPADRSE--------AQKIVDRFRPVFENREIMKVGQNIKYDMLVLAN 434

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDKI 533
           YG+ ++G   D M+  YVL      H++  +A+ +L+Y     +E++  + K+   +  +
Sbjct: 435 YGVQLQGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLNYQTIHIEELIGPKGKNQGNMRDL 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             + V E+A E+++V L+L   L  +L    +  ++E ++ P+I V++ ME  G++ID +
Sbjct: 494 PPASVYEYACEDADVTLKLKNKLEKELDENNVRKLFEEIEMPLIPVLAYMERNGVRIDTE 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKT 652
            LK+ S   +  +  +EE +Y L+G +FN++SPKQ+G++LF +LK    AK TKTGQ+ T
Sbjct: 554 ALKETSRHFTLRMKQIEEEVYQLAGTEFNIASPKQVGEVLFDRLKIVEKAKKTKTGQYVT 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE +  G + ++  ILE R L K+  TY D+LP  IN  T R+HT ++   T TGR
Sbjct: 614 SEEVLESLR-GKHEVVGKILEHRGLKKLLGTYIDALPQLINPETGRIHTSFNQTVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH++    + + F+
Sbjct: 673 LSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIEAFQ 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   A++I+ V +E+V+ + R  AKT NF IIYGIS F LA +L + R EA + I
Sbjct: 733 KGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIYGISVFGLAERLNVDRKEAKELI 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + EY++++    R+ GY+ETIF R+ +  +INS  + +R   ER AINAPI
Sbjct: 793 DGYFENYPHVKEYMDESIRIARERGYIETIFKRKRYLPDINSRNAVVRGYAERNAINAPI 852

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM+ +++     ++ +KM+LQ+HDEL F V  EE     QI++  ME A 
Sbjct: 853 QGSAADIIKVAMVRIYQRFLKERIQSKMILQVHDELNFSVLPEEQEKVKQIVIEEMESAY 912

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                ++ PL  +     NW E
Sbjct: 913 ----KMKAPLLADSGWGQNWLE 930


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 341/990 (34%), Positives = 541/990 (54%), Gaps = 83/990 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           + +  LFL+D  + IYRA++A    P ++ K  G   +A  GF N+L  +L   +     
Sbjct: 22  ESDKKLFLLDAFALIYRAYFAFAKNPRVNSK--GQNTSAAFGFTNVLIDILNKEK----P 75

Query: 59  SHFAVIFDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           +H AV+FD P   T RN  + DYKA+R ++PE +   +  ++   +AF IP    +G+EA
Sbjct: 76  THIAVVFDPPGGATNRNVDFADYKAHREEMPEDIRSMIEPIKQVIKAFRIPIYMAEGYEA 135

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173
           DD+I T   +AEKEGF   +++ DKD  QLVS    +Y   +       + ++ V +K+ 
Sbjct: 136 DDLIGTMAKMAEKEGFKTYMMTPDKDFGQLVSENIFIYKPGRGGDPAVIMGVKEVCEKFE 195

Query: 174 IP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           +  P +++ +  L GD+ DNIPGIPG+G KTA  L+ +YG++E +  N   +K  K +EN
Sbjct: 196 VENPLQVIDILGLWGDAADNIPGIPGVGEKTAKKLIADYGSMEGVFENVEDLK-GKMKEN 254

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++ + E   +S+ L  +  D P+    E L  E+ +   ++     LEF  L  RV    
Sbjct: 255 VINFKEQGLMSKLLATIILDAPVEFSAEELKTEEVDRDAILEIFTDLEFRNLAKRVIGE- 313

Query: 293 DCDAANIEPVVLDINTTENKGI---AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
                  E VV      EN  +     ++ +D      TS   +++ + +  +    P+ 
Sbjct: 314 -------EIVVTSAGVNENGQLDLFGTQSLVDVQQAQPTSGVKTIATEKASYHLVNLPE- 365

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
              ER   L          TK++  K             S  F   T  ++A H+  + +
Sbjct: 366 ---ERKALL----------TKLLKEK-------------SVCFDTETTDINALHADLVGM 399

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           + S  ++        E  ++ +     +         + I+   K FFE++   KI HN+
Sbjct: 400 SFSYKER--------EAYYVAVPKDKKE--------IQAIVDEFKPFFEHKSIEKIAHNM 443

Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSR 524
           KYD  VLHRYG+   G   D M+  Y++    S   +  +A+ +L+YT       I K  
Sbjct: 444 KYDIQVLHRYGVQFAGPLFDTMIAHYLIQP-ESKQGMDFLAEYYLNYTPVSIETLIGKKG 502

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K    +  +    + ++A E++++  QL  L  P++  + L  ++  ++ P++ V+++ME
Sbjct: 503 KGQGNMGDLQPEAISDYACEDADITFQLKQLFAPQIEKDHLKSLFYDMEMPLVSVLAEME 562

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G+ ID   L+  S ++++    LE+ I +L+G  FN+ SPKQLGD+LF  +K  S AK
Sbjct: 563 EEGVAIDIPHLEAYSKQLAEETEGLEKRIKELAGMDFNVDSPKQLGDVLFEHMKISSKAK 622

Query: 645 -TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
            TKTGQ+  T++D+ Q +  D+ II  IL++RQ+ K+KSTY D LP   +    RVHT Y
Sbjct: 623 KTKTGQY-ATSEDILQQHKNDHEIIPCILDYRQMKKLKSTYVDPLPTMKDPVDGRVHTSY 681

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIA 762
               T TGRL+S  PNLQNIPI+++ G++IRRAFI+     +L+SADYSQIELRI+A +A
Sbjct: 682 MQTVTATGRLSSNNPNLQNIPIRSERGKEIRRAFIARSKDFQLMSADYSQIELRIIAALA 741

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
             T + Q F++ +DIHR  AA++F V ++ V+   R  AK +NF IIYG S F L+  L 
Sbjct: 742 DDTNMIQAFKDKVDIHRATAAKVFHVELDDVTKDQRSAAKAVNFGIIYGQSAFGLSQNLG 801

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R+EA   I  YF ++  I  Y++      R+NGYVETI  RR +  +INS  + +R  
Sbjct: 802 ISRTEAKQIIDSYFAQYSTIKTYMDNAVKDARENGYVETIMQRRRYLPDINSANAVVRGF 861

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER A+NAPIQGSAADI + AM++V K+++  K+ +KM+LQ+HDELVF+V  +E     +
Sbjct: 862 AERNAVNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDELVFDVHNDEQEVMKK 921

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++  +ME A    I L VP++V ++++NNW
Sbjct: 922 LVKEAMENA----IQLVVPMEVEMELANNW 947


>gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
 gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
          Length = 920

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 337/983 (34%), Positives = 541/983 (55%), Gaps = 79/983 (8%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYR++YA   +P ++ K  G   +AI GFCN L +++   +     +H 
Sbjct: 2   DKLFLIDAYALIYRSYYAFIRSPRINSK--GQNTSAILGFCNTLNEVITKEQ----PTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD+  +TFR+E +PDYKA R + PE +   +P ++   +A  IP ++  GFEADDII
Sbjct: 56  AVAFDH-GLTFRHEAFPDYKAQREETPEDIKLAVPYIKQILEAMRIPILQTDGFEADDII 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PE 177
            T    A  +G    +++ DKD  QL+     +Y        E I    +  K+G+P   
Sbjct: 115 GTVALKAGNDGIETYMLTPDKDYGQLIRNNIFMYRPRHGGGYEIIGPNEIQDKYGVPEAA 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GDS DN PG PG+G KTAA  + ++G++EN+L +   +K  K RE +    
Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTAAKFINQFGSVENLLNHTDELK-GKMREKVEGAV 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  ++S+ L  +RTDVP  +  + L +E  +  +L    + LEF  L+N+          
Sbjct: 234 DDIKMSKFLATIRTDVPFDMKWDELKVEAIDEEKLTEIFQELEFKTLLNKFIKK---GKE 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N +   L +N  E      E   +R    + S   SLSD          P K        
Sbjct: 291 NPKTENLQLNLFE------EIPTERAVAPEKSPNLSLSD---------VPHK-------- 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I N ++ ++  +   T    S    T ++DA  ++ + ++ S  ++ 
Sbjct: 328 ----------YKLIENEEEAKKICEYFFTKQILSLDTETTSVDAIDAELVGLSFSVEEK- 376

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  E  ++ +S +  +           +++  K  +ENE  LK+G NIKYD  VL 
Sbjct: 377 -------EAFYVAISPNREE--------ALNMVNIFKPLYENEEILKVGQNIKYDYEVLK 421

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDK 532
           +YGI+++G   D M+  Y++      H++  +A+  L+Y     ++I+  + K    +  
Sbjct: 422 KYGITLKGKLFDTMIAHYLIQP-ELHHNMDYMAETLLNYQTVHIEDIIGPKGKKQKNMRD 480

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++ ++V ++A E++++ L+L   L PKL       ++  ++ P++ V++ ME+ GI++D 
Sbjct: 481 LAPAEVSDYACEDADITLRLKNALEPKLKEVNAESLFWEIEMPLVRVLADMELHGIRLDT 540

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWK 651
           + L++ S   ++ +   E  IY+L+GE FN+SSPKQ+G+ILF KL+      KTKTGQ+ 
Sbjct: 541 EALEETSRIFTERMNKYEAEIYELAGETFNISSPKQVGEILFGKLQIMEKPKKTKTGQFV 600

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + L  +    +PI++ ILE+R + K+ STY D+LP  +  +T  +HT ++ A T TG
Sbjct: 601 TSEEVLISLQS-KHPIVEKILEYRGIKKLLSTYIDALPKLVKPQTGHIHTSFNQALTATG 659

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++TD G++IR+ FI  P     SADYSQIELRI+AH+++   + + F
Sbjct: 660 RLSSSDPNLQNIPVRTDDGKEIRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMMEAF 719

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AA+I+  ++E V+   R+ AK  NF IIYGI+ + LA ++ IP  EA + 
Sbjct: 720 RKGHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKEL 779

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  FP +  Y+E+ K   R+ GY ETIF RR +  +INS  +++R   ER AINAP
Sbjct: 780 IADYFKTFPKVQAYMEEAKEVARRKGYAETIFHRRRYLADINSRNATVRGFAERNAINAP 839

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGS ADI + AM+++H+  E  ++ +KM+LQ+HDEL F V  EE     +I++  M+ A
Sbjct: 840 IQGSEADIIKVAMVNIHQRFEREQIRSKMILQVHDELNFSVYPEEKELVERIVLEEMQNA 899

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 LRVPL  +     NW E
Sbjct: 900 ----YQLRVPLIADAGWGKNWLE 918


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 338/987 (34%), Positives = 539/987 (54%), Gaps = 81/987 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           MQK   LFL+D  + IYR++YA    P ++ K  GL  +AI GF N L ++L   +    
Sbjct: 1   MQK---LFLLDAYALIYRSYYAFIKNPRINSK--GLNTSAIMGFLNTLNEVLTKEK---- 51

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +P YKA R + PE +   +P+++   +A+ IP +++ GFEA
Sbjct: 52  PTHIGVAFDPHGPTFRSEAFPAYKAQREETPEDIRKAVPIIKDLLKAYRIPILQVDGFEA 111

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A   G    +++ DKD  QLV     +Y        E +  + + +K+ I
Sbjct: 112 DDVIGTLAEKAGSIGVETYMLTPDKDYGQLVRDNVFIYRPRHGGGYETMGPKEICEKYNI 171

Query: 175 P-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           P P  ++ L AL GDS DN PG PG+G KTAA L+ E+G++E +L  +S IK  K RE +
Sbjct: 172 PSPMAVIDLLALMGDSADNFPGCPGVGEKTAAKLIDEFGSIEQLLARSSEIK-GKLREKV 230

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            ++ E  ++S  L  ++TDVPI + +E+L L + N   L   L  LE     +RV     
Sbjct: 231 EQHVEDIKMSYFLATIKTDVPIELDMENLKLVEPNEDELGKLLTELEMKSFADRV----- 285

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                       +  ++     +  ++D         F+  +     +N   +       
Sbjct: 286 ------------LKKSQKPQKVVNQQLDL--------FAEFATDGQAVNENTS------- 318

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             + L   P N   Y  + N +D+++      T    S    T +  A  ++ + ++ + 
Sbjct: 319 -FETLKTTPHN---YKLVENQEDLKKLCDYFLTNKILSLDTETTSTSAIDAELVGLSFAV 374

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         E  ++ +  +  +          +I++  K  +EN   LK+G N+KYD 
Sbjct: 375 KE--------FEAFYVPVPANREE--------ALQIVNIFKPAYENPEILKVGQNLKYDL 418

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
            VL  YGI ++G   D M+  Y++      H++  +A+ +L+Y     +E++  + K+  
Sbjct: 419 EVLRNYGIELKGKMWDTMIAHYLIQP-ELHHNMDYMAEIYLNYQTIHIEELIGPKGKNQK 477

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +  SQV E+A E++++ L+L   L P+L   +   ++  ++ P++ V+++ME+ G+
Sbjct: 478 SMRSLPPSQVYEYAAEDADITLRLKNKLEPELKKAECEDLFYNIEMPLMPVLAEMELNGV 537

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D   L + S + +  +  +E  IY+L+GE+FN++SPKQ+G+ILF KLK    AK TKT
Sbjct: 538 CLDTASLAETSKQFTNRMNEIEARIYELAGEQFNIASPKQVGEILFDKLKIVEKAKKTKT 597

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T+ + L+Q+    + I+ +ILE R L K+  TY D+LP  IN +T  +HT ++   
Sbjct: 598 GQYVTSEEVLQQLR-NKHEIVADILEHRGLKKLIGTYIDALPKLINPKTGHIHTSFNQTI 656

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIPI+ + G++IR+AFI  P     SADYSQIELR++AH+++   +
Sbjct: 657 TATGRLSSSDPNLQNIPIRGEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEM 716

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            +VF    D+H   AA I+   IE+V+   R  +K  NF IIYGI+ F LA +L IPR E
Sbjct: 717 IKVFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIYGITVFGLAERLDIPRDE 776

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A   I  YF  FP +H+Y+EK+K   R+ GYV T+FGRR +  +INS  +++R   ER A
Sbjct: 777 AKMLIDGYFDTFPQVHDYMEKSKEVAREKGYVTTLFGRRRYLPDINSHNATVRGFAERNA 836

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI + AMI ++   +   + +KM+LQ+HDEL F V  +E      I++  
Sbjct: 837 INAPIQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDELNFSVYPDEKEKVEGIVLQE 896

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+ A    +NL VPL  +     NW E
Sbjct: 897 MQNA----LNLSVPLVADSGFGKNWLE 919


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 354/1009 (35%), Positives = 535/1009 (53%), Gaps = 88/1009 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           MQK+  LFL+D  + ++RA+YA    P ++ K  G   NA  GF N L  L+ N +    
Sbjct: 1   MQKK--LFLLDAFALVFRAYYALIRNPRITSK--GRNTNAQFGFTNTLVDLINNQK---- 52

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV FD  A+T R+  + DYKANR + PE +L  +P ++   +A  IP I I G+EA
Sbjct: 53  PTHMAVCFDTHALTERHTDFADYKANRQETPEDILAAVPDIKKIIEALNIPVIAIDGYEA 112

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I      AE  G+ V +++ DKD  QLV+    +Y    +    E +  + V +KWG
Sbjct: 113 DDVIGALARQAELAGYDVYMVTPDKDYGQLVTEKIKIYKPPYQGGSIEIMGPKEVCEKWG 172

Query: 174 IPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           I    +++ +  L GD++DNIPGI G+G KTAA LL EY  LENIL NA  IK     E 
Sbjct: 173 IKNVSQVIDILGLMGDAVDNIPGIRGVGEKTAAKLLAEYETLENILANADTIK-GSLGEK 231

Query: 233 ILEYAETARLSRKLVMLRTDVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRV--- 288
           I    E A +S+KL  + TD+P  I   E   +++ N   L      LEF     R+   
Sbjct: 232 IRAGKEDAIMSKKLATIITDIPAAIFHEEDFRIKEMNKEALKEVFDLLEFRSFTKRLLGE 291

Query: 289 -----------ATTYDCDAANIEPVVLDINTTE-----NKGIAIETEIDRDTTIKTSQFS 332
                      ++  D   +      +  NT +     N G  +    D +      +  
Sbjct: 292 GAGALPDQWRPSSNTDTGQSTTGNFKVKANTNQLDLFGNNGAVVPVTADAEQI--QEEPD 349

Query: 333 SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF 392
           +L    +  N   TP             Y + ND          IQQ++  +      SF
Sbjct: 350 ALPTGPAAANIHNTPH-----------NYILLNDEIA-------IQQFIDSVMGETEISF 391

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
              T  +D   ++ + ++            K E  ++      ++          ++L+ 
Sbjct: 392 DTETTGLDPNEAELVGLSFCIT--------KGEAYYVPCPADRNE--------CIQLLNN 435

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLD-SGRSSHDIASIAQ 510
            +  F N     +G NIKYD L+L  YG  ++G   D ML  YV++  G+SS D+  ++ 
Sbjct: 436 FQPLFNNASITWVGQNIKYDLLMLKWYGFELQGNIFDTMLAHYVIEPDGKSSMDL--LSA 493

Query: 511 KWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           K+L Y    I     K  K    +  I   +++E+A E++++ LQL  +  P +  E++ 
Sbjct: 494 KFLGYQPVSITELIGKKGKGQGNMRDIEIEKIKEYAAEDADITLQLKNVFLPLIKKEQVE 553

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            V+  ++ P++ V++ ME  GI+ID+  LK  S  + K+ +  E+++Y+ +G KFNL+SP
Sbjct: 554 KVFAEVENPLVKVLTNMEFEGIRIDEQFLKDYSIVLQKDAMEFEQSVYEQAGVKFNLASP 613

Query: 627 KQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           KQLG++LF K+K  P   KTKTGQ+ T    L ++    + I  +IL +R+L+K+K+TY 
Sbjct: 614 KQLGEVLFDKMKLDPKAKKTKTGQYATGEDVLAKL-ANQHKICNDILSFRELTKLKNTYV 672

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK- 744
           D+LP  IN +T RVHT Y+ A  +TGRL+S  PNLQNIP++T+ G++IR+AFI       
Sbjct: 673 DALPQLINSKTGRVHTSYAQAVAVTGRLSSTNPNLQNIPVRTERGREIRKAFIPRDENHV 732

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+SADYSQIELRI+A I+    + + F+   DIH   AA++F V   +V+ +MR  AK++
Sbjct: 733 LVSADYSQIELRIVAAISADVNMCEAFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSV 792

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYG   F LA  L I R+EA   I  Y  +FP I +Y++ T NF ++ GYVET+ G
Sbjct: 793 NFGIIYGQGAFGLADNLGISRTEAKAIIDNYKKQFPNIQQYMDNTINFAKETGYVETLMG 852

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           R+    +INS   ++R   ER AIN+PIQG+AAD+ + AMI +  + + H   +KMLLQ+
Sbjct: 853 RKRWLKDINSANFTVRGFAERNAINSPIQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQV 912

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKA-CLPKINLRVPLKVNIKVSNNW 972
           HDELVF+V +EE+     +I+  M+ A  LP     VP    I    NW
Sbjct: 913 HDELVFDVLKEELEKVKPVILDCMQHALALPN---DVPTNAEIGDGENW 958


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 339/999 (33%), Positives = 549/999 (54%), Gaps = 60/999 (6%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYRA+YA   +P ++ K  G   +A+ GF N L ++L    K+   +H 
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I
Sbjct: 56  GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177
            T    A K G    +++ DKD  QLV     +Y    T   E + IE V  K+ I  P 
Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K   + + +    
Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-VEANR 234

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV--------- 288
           +    S+ L  ++ DVPIT+ ++ L  E+ N   L    + +EF  LI+RV         
Sbjct: 235 KMIEFSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKSAF 294

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
           A TY     N     L       +G A +  +  D + + S F   +       S  +PQ
Sbjct: 295 AGTYTDATGN----DLQGRNRTPEGSARQGNMP-DGSGQLSLFGEPASNGKSPASPSSPQ 349

Query: 349 -KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
             LF E     +     ++ Y+ +    +++   Q ++T          +         +
Sbjct: 350 GNLFAE----FTNGGTESEKYSNLACLDNLKYDYQLIDT---------EEKRSELLQNLL 396

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEH 461
              I +LD +   +  +    + +S   +++           T  ++I++  +  FE E 
Sbjct: 397 TKEIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEG 456

Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
            LK+G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y     
Sbjct: 457 ALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHI 515

Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
           +E++  + K    +  +S   + ++A E++++ L+L  +L  +L       ++  ++ P+
Sbjct: 516 EELIGPKGKGQKNMRDLSPEAIYKYACEDADITLKLKNILEQELKTNDAEKLFYEIEMPL 575

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V++ +E  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF K
Sbjct: 576 VPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDK 635

Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           L+    AK TKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  INK 
Sbjct: 636 LRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKE 694

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T ++HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIEL
Sbjct: 695 TGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIEL 754

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH++    + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS F
Sbjct: 755 RIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF 814

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA ++ + R EA + I  YF  +P I EY++K+ +  R+ GY+ETIFGR+ +  +INS 
Sbjct: 815 GLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSR 874

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            S +R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL F V  E
Sbjct: 875 NSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPE 934

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E     +I++  ME A     +++VPL+ +    +NW E
Sbjct: 935 EKEKVQKIVIEEMENA----YHMQVPLRADCGWGSNWLE 969


>gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134]
 gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134]
          Length = 955

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 349/1001 (34%), Positives = 545/1001 (54%), Gaps = 84/1001 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA +A    P ++ K  G+   A+ GF N L ++LQ        +H  +
Sbjct: 4   LFLLDAMAMIYRAHFAFSKNPRINSK--GMNTGAVLGFTNSLVEVLQKEN----PTHIGI 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+  Y +YKANR + PE +   +P +    +AF IPA+ + G+EADDII T
Sbjct: 58  AFDTAEPTFRHIEYKEYKANREEQPEDITNAIPYIYKMVEAFKIPALVLPGYEADDIIGT 117

Query: 124 YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDI---EHVIKKWGIPP-E 177
               A +EGF  V +++ DKD  QLV     LY  +     IDI     V++K+ I   +
Sbjct: 118 IAKRAAREGFDEVYMMTIDKDYAQLVEDKIFLYKPSYMGNGIDIWDVNKVLEKFDIERVD 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++    + GD++DNIPGIPG+G KTA   L+ YG++E +L N  ++K  K++E +    
Sbjct: 178 QVIDFLGMQGDAVDNIPGIPGVGPKTAVKFLKAYGSVEGLLENTDKLK-GKQKEKVEASR 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS+KL  +  +VPI    E+L  E  +  ++ +  + LEF  L  R+    D  A 
Sbjct: 237 DQALLSKKLATINIEVPIDFSEENLKYESFDKDKVKALFEELEFRTLTRRLFKE-DAPAG 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                            A + +  R   +  +Q     D T   +S+ T     L  +  
Sbjct: 296 -----------------ATKKKTKRSPKVAANQMGLFGDGTPADDSQATAPATSLANIGN 338

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
              +      Y  I       + +  L+      F   T ++ A  ++ + IA +T    
Sbjct: 339 TVHH------YYAIDTPGKRTELIAHLKQQDEFCFDTETTSLVAQDAELVGIAFAT---- 388

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
               +  E  ++       +         + I+   K+ FE+E   KI  N+KYD +VL 
Sbjct: 389 ----YAGEAYYVPTPADQKE--------AQAIVDEFKEVFEDESIGKIAQNLKYDWVVLK 436

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSSIPIDK 532
            YGI  +G F D ML  Y+L      H++  +A+ +L+Y   EI     K  K    +  
Sbjct: 437 NYGIEPKGKFFDTMLAHYLLQPDMR-HNMDVLAKSYLNYEPVEITSLIGKKGKKQGSMRD 495

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH--------------VYERLDKPMID 578
           +   ++ E+A E++++ LQL  +   ++  + L H              + + ++ P+I+
Sbjct: 496 VELDKITEYAGEDADITLQLKEIFDAQIKAQDLRHPAPEDGGEKVTLEKLLDEVETPLIE 555

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V++ +E  G+++D + L ++S E++K ++ LEE IY ++GE+FN++SPKQLG+ILF KL+
Sbjct: 556 VLATVETNGVRLDSESLAKLSKELAKEVVVLEEKIYKIAGEQFNIASPKQLGEILFGKLQ 615

Query: 639 F-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
             P   KTK+GQ+ T  + L ++    N I+++IL++R L K+K+TY D+LP  +NK+T 
Sbjct: 616 LDPKAKKTKSGQYATGEEILVKL-ADKNEIVQHILDFRGLQKLKNTYVDALPELVNKKTG 674

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIEL 755
            +HT Y+ A   TGRL+S  PNLQNIPI+T  G+++RRAFI P + +  L++ADYSQIEL
Sbjct: 675 LIHTSYNQAVAATGRLSSTNPNLQNIPIRTAQGREVRRAFI-PRSDEFVLLAADYSQIEL 733

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+A  ++   + + F+N  DIH   A++I+ V +++V   MRR AKT NF IIYGIS  
Sbjct: 734 RIMAEFSQDATMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTANFGIIYGISAH 793

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+ +L IPR EA + IK YF  FP + +Y++   N  R+  YVETI GRR +   INS 
Sbjct: 794 GLSERLNIPRKEAGEIIKAYFEEFPAVKQYMDDMINKAREQEYVETILGRRRYLRNINSR 853

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +  R   ER AINAPIQGSAAD+ + AMI +H+ L+   L +KM+LQ+HDELVF+  ++
Sbjct: 854 NAVERGNAERNAINAPIQGSAADMIKIAMIRLHEFLKKEHLKSKMILQVHDELVFDAHKD 913

Query: 936 EITTASQIIVHSMEKACLPKIN--LRVPLKVNIKVSNNWQE 974
           E+      IV  M K  L  IN  ++VP++V +     W E
Sbjct: 914 ELGILKPAIVDLM-KNALSSINRTMQVPMEVEVGEGTTWLE 953


>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
 gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
          Length = 921

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 332/982 (33%), Positives = 530/982 (53%), Gaps = 80/982 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA+YA   +P ++ K  G   +AI GF N L    ++ R++      A+
Sbjct: 4   LFLLDAYALIYRAYYALIRSPRINSK--GENTSAIYGFVNTL----EDIRRKEAPDMLAI 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E YPDYKA R   PE +   +P+++   +A+ IP IE++GFEADD+I T
Sbjct: 58  AFDPSGPTFRHEAYPDYKAQREATPEDIKRSVPIIKDIIRAYNIPIIEVKGFEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEHVIKKWGIP-PEK 178
               A  EG  V +++ DKD  QLV P   +    +     E + +E V +K+G+  P++
Sbjct: 118 VAKRAAAEGIEVRMVTPDKDYAQLVGPNVLMQRPGHGNAPWEILGVEEVCQKYGLTDPKQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++   AL GD+ DNIPG PG+G KTA  L+Q +G++EN+L +   +K  +R + + +  +
Sbjct: 178 VIDYLALMGDAADNIPGCPGVGPKTATTLIQRFGSIENLLEHTDELKGAQR-QKVEDNVD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R S+ L  ++TDVP+ +  E   L + +  +L    +ALEF   ++R   + +     
Sbjct: 237 KIRFSKFLTTIKTDVPLDVNWETWKLTEPDFDQLQPIFEALEFRTFLSRWQKSQN----- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                + ++  I+   F+ L+D+ +    E +           +
Sbjct: 292 ---------------------LQKNQAIQGDLFAMLADEDAGDAKESS-----------I 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           S        Y  + N  +I+ +  +L T    +    T   +A  +K + ++ ST   + 
Sbjct: 320 STLENTEHEYHLLDNEDEIRDFCAQLLTFEKVALDTETTDKEAIKAKLVGMSFSTAPGR- 378

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I +S  T           K  L  L+ F+E    L +G N+KYD  VL  
Sbjct: 379 -------AWYIPVSRETDT--------VKARLELLRPFWEKADVLIVGQNLKYDLTVLAS 423

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPIDKI 533
           YG+  +G   D ML  YV+     +H++  +A  +L+Y      + I    +    +  +
Sbjct: 424 YGVKPKGRLFDTMLSHYVVQP-ELAHNMDYLASVYLNYRPIPIEQLIGPKGRGQRNMGDL 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               V E+A E+++V L+L   L   +    +  ++  ++ P++ V+++ME  G+ +D +
Sbjct: 483 DPKDVFEYACEDADVTLRLMAPLEKAMRENGVEQIFYDIEMPLMPVLARMERNGVCLDTN 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKT 652
            L+++S+E +  ++ LE  IY L+G  F ++SPKQ+G++LF +LK    AK TK+GQ+ T
Sbjct: 543 ALQEISSEFTARMVKLEAEIYQLAGHPFMITSPKQVGEVLFGELKIDEKAKKTKSGQYST 602

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L +++   + I+  IL  R L K+ STY ++LP  +N +T  +HT ++ A T TGR
Sbjct: 603 SEEVLVRLSH-KHEIVGKILAHRGLKKLLSTYVEALPKLVNPQTGHLHTTFNQAVTSTGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIP++ + G++IR+AFI        SADYSQIELRI+AH++K   L + F+
Sbjct: 662 LSSSNPNLQNIPVRGEDGREIRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLIEAFK 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AA IF  ++ +VS   RR AKT NF IIYGIS F LA ++ + R+EA + I
Sbjct: 722 KGEDIHAATAARIFKKDLSEVSRDERRKAKTANFGIIYGISAFGLAERMDVSRTEARELI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + EY++ +    R+ GY+ET FGRR +  +INS  + +R   ER A+NAPI
Sbjct: 782 DNYFSTYPKVKEYMDSSIEKARRRGYIETAFGRRQYLADINSHNAVVRGYAERVAVNAPI 841

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI + + L    L TKM+LQ+HDEL F +P  E+  A  IIV  ME A 
Sbjct: 842 QGTAADIIKLAMIRIDQRLRAEGLKTKMILQVHDELNFSIPPAELECAKAIIVSEMESA- 900

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                + VPL+ +     NW E
Sbjct: 901 ---YQMSVPLEADCGTGKNWLE 919


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 346/1006 (34%), Positives = 552/1006 (54%), Gaps = 74/1006 (7%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYRA+YA   +P ++ K  G   +A+ GF N L ++L    K+   +H 
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I
Sbjct: 56  GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177
            T    A K G    +++ DKD  QLV     +Y    T   E + IE V  K+ I  P 
Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K   + +      
Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-----V 230

Query: 238 ETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288
           ET R     S+ L  ++ DVPI + ++ L  E+ N   L    + +EF  LI+RV     
Sbjct: 231 ETNRKMIEFSKFLATIKIDVPIALNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRDK 290

Query: 289 ----ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
               A TY  DA   +P           G +       + + + S F   +       S 
Sbjct: 291 KSAFAGTY-TDATGNDPQ----GRNRTPGGSARQGNTPNGSGQLSLFGEPASNGESPASP 345

Query: 345 QTPQ-KLFLE------RLQKLSQYP-INNDSYT-KIVNTKDIQ-QWVQKLETIGSASFKI 394
            +PQ  LF E        +K S    ++N  Y  ++V+T++ + + +Q L T    S   
Sbjct: 346 SSPQGNLFAEFTDGGTESEKYSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDT 405

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T   D   ++ + ++ S  +         +  ++ +    ++         ++I++  +
Sbjct: 406 ETTGTDPITAELVGMSFSYAEN--------QAFYVPVPADRAE--------AQKIVNEFR 449

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513
             FE E  LK+G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L
Sbjct: 450 PAFEKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYL 508

Query: 514 SYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            Y     +E++  + K    +  +S   + ++A E+++V L+L  +L  +L       ++
Sbjct: 509 HYQTIHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLF 568

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             ++ P++ V++ ME  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+
Sbjct: 569 YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQV 628

Query: 630 GDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           G++LF KL+    AK TKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+L
Sbjct: 629 GEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDAL 687

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  INK T ++HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SA
Sbjct: 688 PLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSA 747

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRI+AH++    + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF I
Sbjct: 748 DYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGI 807

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYGIS F LA ++ + R EA + I  YF  +P I EY++K+ +  R  GY+ETIFGR+ +
Sbjct: 808 IYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRY 867

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS  S +R   ER AINAPIQG AADI + AM+ +++  +   + +KM+LQ+HDEL
Sbjct: 868 LPDINSRNSVVRGYAERNAINAPIQGGAADIIKVAMVRIYQRFQSESIKSKMILQVHDEL 927

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            F V  EE     +I++  ME A      ++VPL+ +    +NW E
Sbjct: 928 NFSVLPEEKEKVQKIVIEEMENA----YRMQVPLRADCGWGSNWLE 969


>gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02]
 gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18]
 gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140]
 gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19]
 gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11]
 gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18]
 gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1]
 gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1]
 gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332]
 gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679]
 gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035]
 gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 908

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 345/956 (36%), Positives = 519/956 (54%), Gaps = 70/956 (7%)

Query: 31  DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM 90
           DG P  A+ G  NML +L    R E    + AV+FD     FR++++ +YKA RP +P+ 
Sbjct: 9   DGAPTGALYGVLNMLRRL----RSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDD 64

Query: 91  LLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           L PQ   LP LVRL     G P + I   EADD+I T      + G  V + + DKD+ Q
Sbjct: 65  LRPQAEALPDLVRLT----GWPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQ 120

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           LV     L +T+  E +DIE V  K+G+ P+++    AL GD +DN+PG+   G KTA  
Sbjct: 121 LVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALIGDKVDNVPGVEKCGPKTAVK 180

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            L+ YG+L+ ++ +A  IK  K  EN+        LS  LV ++TDV +     H  L D
Sbjct: 181 WLEAYGSLQGVMEHAPEIK-GKVGENLQAALPQLPLSYDLVTIKTDVDL-----HTELSD 234

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
                           + + R A  +         + +D      +    E E + +T  
Sbjct: 235 G--------------IESLRRTAPKW-------AQLAVDFKRWGFRTWLKEAESNMNTGS 273

Query: 327 KTSQFSSLS-DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
               F S S  + + +N+E   +K    R +K +  P   D Y  +         + KL 
Sbjct: 274 TDDLFGSDSIGEQAALNAEIPSEK----RAEKATA-PEKLD-YQAVTTEAQFAALLDKLA 327

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNT 444
              +      T ++DA +++ + I+I+         F+  E ++I   V  S  +  +  
Sbjct: 328 KADTIGIDTETTSLDAMNAELVGISIA---------FQAGEAVYI--PVGHSLTAAPEQL 376

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503
             +++L  LK   EN    KIG N+KYD+ V   YGI++     D ML SY+++S    H
Sbjct: 377 DLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANYGIALNNIAGDAMLASYIIES-HLGH 435

Query: 504 DIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +  ++ +WL     T + +       I    ++  Q  E+A ++++  L+L   LR ++
Sbjct: 436 GLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEARLRAQM 495

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
             +K L +YE+++ P+  V+ +ME  G+QID+  L + SAE+   L+ LE+  Y  +G+ 
Sbjct: 496 D-DKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 554

Query: 621 FNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           FNL+SPKQL +ILF K+  P+    KT  G   T    LEQ+   D P+ K IL+ R L+
Sbjct: 555 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSLA 613

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+KSTY D LP  I+ R  RVHT Y+ A  +TGRLAS  PNLQNIPI+T  G+++RRAF 
Sbjct: 614 KLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFT 673

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           +PP   ++SADYSQIELRI+AH++    L   F++  D+HR  AAE+FG   E VSP+ R
Sbjct: 674 APPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQR 733

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R+AKTINF +IYG+  + LA  L I    A ++I RYF R+PG+ EY+++TK      GY
Sbjct: 734 RYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGY 793

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           VET+FGRR++  +I +  ++ R   ERAAINAP+QG+A+D+ +RAMI+V   L D  + +
Sbjct: 794 VETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMINVRNWLSD-GIGS 852

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K+++Q+HDELV EV E E+    + +   M K  +    L VPL   + V  NW+E
Sbjct: 853 KLVMQVHDELVLEVVETELDFVKEKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 906


>gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
 gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
          Length = 946

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 344/989 (34%), Positives = 541/989 (54%), Gaps = 87/989 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +K+  LFL+DG + +YRA+YA      K  DGLP  A+ GF + L K+ +  + +    +
Sbjct: 27  EKKPALFLIDGMAMVYRAYYALQSARMKTRDGLPSGAVFGFTSALLKIFETYKPD----Y 82

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+++Y  YKANRP  PE L+ QL  +       GIP I+  GFEADD+
Sbjct: 83  LAVAFDSREKTFRHDLYDLYKANRPSPPEDLISQLDAIYQLVTLLGIPIIKTAGFEADDL 142

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176
           I +     EK   A+ I++ DKDL QLV+    +    K     E + I+ +  ++G+ P
Sbjct: 143 IGSLARKFEK-SCAIYIVTPDKDLAQLVNDEVYILKPGKIQNELELLGIKEITIQFGVRP 201

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+     AL GD+ DNIPG  GIG KTAA L+ +YG++ +IL+N + I   K R+++ E+
Sbjct: 202 EQFTDFLALAGDASDNIPGAKGIGPKTAASLIGKYGSIASILLNLNEI-SPKNRQSLEEF 260

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
               +L R+LV +RTD+ + + L++L     +  +++ FLK  E   +  R+   +    
Sbjct: 261 QPRLKLIRQLVTIRTDLDLHVSLQNLATTTPDVEKILPFLKQYELKSIAARLPAIFP--E 318

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N++P  L  +   N         +++ + + +   S  D                    
Sbjct: 319 MNLQPESLPADNENN---------EKNDSPELTAPGSAKDGAD----------------- 352

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +   +++Q  V++L    + +    T ++D F ++ + I++S   +
Sbjct: 353 -----------YRIVTRKEELQALVEQLNHAAALAVDTETTSLDTFQAELVGISLSIKPK 401

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLV 475
                   +  F+           GK  + + + L  LK   EN    K G N+KYD LV
Sbjct: 402 --------QAWFVYF---------GKGGVDRRVALDMLKPVLENPSLRKTGQNLKYDLLV 444

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L +YGI +     D ML SYVLD   + H++  +A + LS    T  E++   K  + I 
Sbjct: 445 LKKYGIDINPVAFDTMLASYVLDP-EAKHNLDDLALRHLSIKTTTYDELVADGKKKMSIL 503

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590
            +   ++ ++A +++++ L+L  + + KL+ EK LL + E ++ P++ V++ ME  GI I
Sbjct: 504 DVPPGELSDYACQDADLALRLQEVFKEKLLQEKDLLWLCENIEFPLVPVLATMEYHGISI 563

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D LK+    +SK +  L E I++ SG  FNL SPKQL  ILF  L  PSG  TKTG +
Sbjct: 564 DTDHLKKTETTVSKQIGQLSEKIFEASGRVFNLDSPKQLAHILFDILGLPSGKATKTG-F 622

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  Q LE +    +P+ +++LE+R L K+++TY ++LP  IN  T ++HT ++   T T
Sbjct: 623 STNVQVLEDL-APIHPVAQDLLEYRSLQKLRNTYIEALPKMINPLTGKLHTSFNQHVTAT 681

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIPI+T +G++IRRAFI S P   L+SADYSQIELR+ A I+    L +
Sbjct: 682 GRLSSSHPNLQNIPIRTLIGKEIRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLME 741

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N  DIH   A  IF  N  +++P+MRR AK +NF ++YGI PF L+ +L I R+EA 
Sbjct: 742 AFRNREDIHSATARTIF--NTTEITPEMRRKAKEVNFGVLYGIMPFGLSRRLNISRNEAK 799

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  Y  ++PGI   +++  +  ++ GYV T+ GRR +  ++NS   +++   ERAA+N
Sbjct: 800 NIIDTYTEKYPGIFNALQQIISDGKERGYVSTLLGRRRYIPDLNSRNKNMQKAAERAAMN 859

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE----ITTASQIIV 945
            PIQG+AADI + AM      L  HK+ + MLLQ+HDEL+FE PE E     T   ++++
Sbjct: 860 TPIQGTAADIIKCAMNLCSTQLRLHKMKSVMLLQVHDELLFETPENEKHRLKTLVEEVMI 919

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++  L      VP++V+  +  NW E
Sbjct: 920 DAAKRCGLHN----VPVEVDTGIGKNWLE 944


>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
 gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
          Length = 984

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 344/1004 (34%), Positives = 526/1004 (52%), Gaps = 72/1004 (7%)

Query: 6   HLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIA-GFCNMLWKLLQNSRKESIASHF 61
            LFL+DG + IYRAF+A    PL + + +     +IA G  + L +LL   + E +A   
Sbjct: 11  RLFLIDGYALIYRAFFALLQRPLSTSRGEN---TSIAWGIASFLKRLLNTHQPELLAW-- 65

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ----LPLVRLATQAFGIPAIEIQGFEA 117
             + D  A TFR+E+YPDYKA R K+ + L       L  V     A+ IP +   GFEA
Sbjct: 66  --VHDSGA-TFRDELYPDYKATREKLTDDLQADFDQGLQRVLQLLAAYDIPVLSAPGFEA 122

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-------TVKEEKIDIEHVIK 170
           DD+I T      + G+ V ++S DKD  QLV P   L +       +V E  + +E+   
Sbjct: 123 DDVIGTMAARGVEAGYNVVVVSGDKDFQQLVRPGVWLLNPGRGGPASVDESWVGVENGSD 182

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           + G+PPE+++   A+ GD+ DN+PG+ GIG K A  L+ +YG LENIL N   I +K+ R
Sbjct: 183 RLGVPPERVIDYLAIVGDTSDNVPGVKGIGEKGAIELITQYGPLENILANVENITKKRPR 242

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA- 289
           E + +YA++ARLS++LV +  DVP+    E L +   N   L +    LEFT L+  V  
Sbjct: 243 EALQQYADSARLSKQLVTIHCDVPVPFESEKLTVGQPNTDALRALYLELEFTSLLKDVGG 302

Query: 290 ---------TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
                    T     AA++ P +          +          T+  S    L+D    
Sbjct: 303 AVPVATSSGTGATSTAADVAPALPVPGRPAAPAV----------TLGESGVPVLADARYV 352

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
                      L R++++    I+ ++  +     D+     +L         I     +
Sbjct: 353 TVDTVEALATLLTRVREVPYIAIDTETVIEPGAPFDVDALRSRL-----VGLSIAVAPGE 407

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH--------TSQDSTGKNTLTKEILSY 452
           A++  P A       ++DD S  +  +  D             + +         +  + 
Sbjct: 408 AYY-LPFA------HRRDDGSGNLALLAGDTGTGIVGRRINAGAPEPVNLPPFDSDACAP 460

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+   E+    KI  N KYD LVL   G+ + G   D ML SYVLD GR SH +  +A +
Sbjct: 461 LRAMLEDPSVTKIAQNAKYDLLVLRSSGVRVAGVGFDTMLASYVLDPGRRSHGLDLLALE 520

Query: 512 WLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            L +T      ++   K+ +P D       ++++ E+ ++ ++L   L P L    LL +
Sbjct: 521 QLGHTMTAYDTLVGKGKTQLPFDVAPVDTARDYSCEDVDITMRLRAKLEPMLAEHALLSL 580

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           ++ ++ P++ V+++ME  GI ID D    + A  +     +E+ IY  +GE+FN++S  +
Sbjct: 581 FQEIEVPLVSVLAEMEWEGIAIDLDWFASLKARFAAERGRVEQAIYAEAGEEFNINSNPK 640

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           L  ILF KL  P   KT TG   T A  L+++    + +   ++E+R++ K++ TY D+L
Sbjct: 641 LRAILFEKLGLPVKKKTATGP-STDASVLQELAEEGHVLPTLLMEYREIFKLEGTYIDAL 699

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  ++ R +R+HT YS   + TGRL+S +PNLQNIPI+ +LG+ IRR F+     +L+SA
Sbjct: 700 PRLVHPRDRRLHTSYSQTVSATGRLSSHDPNLQNIPIRRELGRDIRRGFVPREGWRLLSA 759

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR+LAH++        F+   DIHR  AA IFGV +E V+ +MR  AKTINF+ 
Sbjct: 760 DYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARAKTINFAT 819

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG     L+ QLRI  +EA  +I+ YF RF G+  ++++     R  GYVET+F RR +
Sbjct: 820 IYGQGAHALSRQLRITNAEAKAFIETYFERFAGVRGFLDQCVVDARARGYVETLFKRRRY 879

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             E+     +IR   ER A NAPIQGSAAD+ + AMI+V  +++   LA++MLLQ+HDEL
Sbjct: 880 IPELKERNFNIRAFGERVAQNAPIQGSAADLIKIAMINVRNAIDAEGLASRMLLQVHDEL 939

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           VFE+P EE  T S ++   ME A +    L VPL V + +  +W
Sbjct: 940 VFELPVEEADTLSALVKREMEGAAV----LNVPLLVEMGLGTDW 979


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 349/996 (35%), Positives = 552/996 (55%), Gaps = 70/996 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFLVD  + I++ +YA    P+  R   G+  + + GF     K L++ +K        V
Sbjct: 4   LFLVDAYALIFKYYYAFMGRPM--RNRAGMNTSVVFGFT----KFLRDIQKREHPDLLGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR EI+P+YKANR + PE +L  +P V+   +A  IP +E+ G+EADD+I T
Sbjct: 58  AFDPKGGSFRREIFPEYKANRAETPEDILLSVPYVKRIVEAMCIPVLEVPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PEKM 179
             +   + G+ V +++ DKD  QLV     +Y     + I+I   E + +K+GI  P+ +
Sbjct: 118 LAHKGVEAGYDVFMVTPDKDYGQLVCDNCKIYKQKGNDGIEIVGREAIREKYGIENPQLV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD+ DNIPG+PGIG KTA  L+QE+G +ENIL NA RIK ++  E I E+ + 
Sbjct: 178 RDILALWGDASDNIPGVPGIGEKTACKLVQEWGTVENILQNADRIKSRQG-EKIAEWGDK 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             L+++L  +  DVPI    E L +  C  PR I  LKAL F +L  R+      + A  
Sbjct: 237 LLLAKRLTTICLDVPIDFREEDLTV--C-APR-IDELKAL-FAELDFRMFLNDLTNLAPA 291

Query: 300 EPV--------------VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
           EP+              V    +   K  A+  + D       S  S  SD+ S  + EQ
Sbjct: 292 EPLPEGPRQAAQTQLAEVARAKSAAAKKAALAGQGDLFAPAADSGESPASDRESASSDEQ 351

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           T +       ++ +       +YT + N ++++  ++++       F   T   D F+ +
Sbjct: 352 TAES------EEFATAQTTPHAYTIVRNAQELEAVLREVAACPEFCFDTETTGFDIFNDR 405

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + ++++            E  +I  +           + T E  + ++  F +    KI
Sbjct: 406 IVGLSLAVR--------PYEAWYIPFN----------ESNTAEYAALIRPLFADGKIAKI 447

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521
           G NIK+D +VL R G+ +RG   D M++ Y+LD   S H++ ++A ++L+Y   +   ++
Sbjct: 448 GQNIKFDLMVLARLGVEIRGRLYDTMILHYLLDP-ESRHNMDALAMRYLNYRPISITSLI 506

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
                 + +D IS  +V E+A E+++V L+L  +L PK+    L  +Y  +++PMI V++
Sbjct: 507 GKGARQLTMDMISLERVAEYAAEDADVTLRLKQVLWPKVEELDLAGLYLEIEEPMIAVLA 566

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFP 640
           ++E+ G++ID + L + + E++K L  LE +I  L+ E   N++S +QLG++LF KL+  
Sbjct: 567 EIEMAGVRIDSEALAEYAVELNKTLNDLEGDIRRLADEPSLNVNSARQLGEVLFGKLRIA 626

Query: 641 SGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
              K TKT Q+ T  + L Q       I+  ILE+R + K+ STY ++LP  +N  T ++
Sbjct: 627 EKPKMTKTKQFSTEEEYL-QTFAHKYEIVDKILEYRGVKKLLSTYVEALPLLVNPVTGKI 685

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRIL 758
           HT ++ A T TGRL+S  PNLQNIP++ +LG++IR+AFI S     L+SADYSQ+ELR++
Sbjct: 686 HTSFNQAVTATGRLSSTNPNLQNIPVRDELGRRIRKAFIPSDDEHLLLSADYSQVELRLM 745

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L   FE+  D+H   AA +FG  + +V    RR AKT NF IIYGIS F L+
Sbjct: 746 AHLSGDESLIAAFEHGEDVHAATAARLFGKEVAEVDSDERRKAKTANFGIIYGISAFGLS 805

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L IPR EA + I+ YF  +P + EY+++     +++GYV TIFGRR + ++I S  + 
Sbjct: 806 QRLDIPRKEAKEIIEGYFASYPKVKEYMDRVVEEAKRDGYVSTIFGRRRYLNDIASRNAV 865

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R + ER A+NAPIQGSAADI + AMI V +   +  + +K++LQ+HDELV ++   E  
Sbjct: 866 ARGLAERNAVNAPIQGSAADIMKIAMIRVSRRFREEGIRSKVILQVHDELVVDMLRSEQE 925

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               I+  +ME A      LRV L V+  V +NW E
Sbjct: 926 RVIAIVTEAMESAA----ALRVRLVVDCGVGDNWLE 957


>gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47]
          Length = 975

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 339/979 (34%), Positives = 516/979 (52%), Gaps = 93/979 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + +VD  S IY+ F+A P ++    GLPV+A+ GF   + +LL  SRK     +    FD
Sbjct: 78  VVVVDAHSLIYQVFHALPPMTSTG-GLPVSAVYGFVGDMLELL--SRKNP--DYLIAAFD 132

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              VTFRNE+YP+YKANR  +P+ L  Q+PL+R A  A GI  IE  GFEADD++AT   
Sbjct: 133 KSEVTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLATVAA 192

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             E+ G    ++++DKD  QL+S  T +Y+  K+++ID   +   WGI P+++V  QAL 
Sbjct: 193 KVEEAGGRCLVVTSDKDCRQLISEQTKIYNIRKDQEIDAAELFGLWGIRPDQVVDYQALV 252

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD +DN+PGI  IG K A  LL+ +  LE IL NA  I  KKR+EN++         R+ 
Sbjct: 253 GDPVDNVPGISLIGPKIAQQLLETHETLEEILNNAESISGKKRKENLMN-------GREA 305

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
            M+  +                   L+   + +E     NR   T    AA++E V    
Sbjct: 306 AMMSRE-------------------LVELKRDVESPIPWNRCVRT----AADLERV---- 338

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                           D  ++   F  L  + +++   + P +            P    
Sbjct: 339 ----------------DALLQEFGFRRLRSRAAELLGGEAPAE---------ESKPAWES 373

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I N  +++     +E        I T+T          + IS   Q  + ++    
Sbjct: 374 RYQTITNESELKALA--VELAKQTVLAIDTETTSTHARGCDLVGISIAWQPGEAAY---- 427

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
               + V         N L   ++  L+   E+    K+GHN+K+D +VL   G+ + G 
Sbjct: 428 ----IPVRAPDGDPAINELI--VIETLRDVLESSAIEKVGHNLKFDVIVLRSAGVQLGGI 481

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
             D M+  Y+L+SG  +H +  +AQ+ L +T    K+++ + K  I +D++    V  +A
Sbjct: 482 TMDTMVADYLLNSGGRNHGLDDLAQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSPYA 541

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E+ +V ++L   LR +L    L  +++ ++ P+ +V+++ME  GI ++ D L ++S   
Sbjct: 542 CEDVDVPIRLAPTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERF 601

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
            K++  L   ++  +G +FNL SPKQLG +LF +L  P   KTKTG   T A  L Q+  
Sbjct: 602 DKDIADLRALVFSAAGHEFNLDSPKQLGVVLFEELGLPVIKKTKTG-VSTDADVLSQLAV 660

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            ++ I +++L++RQ +K+K+TY D+LP  I  +T RVHT +      TGRL+S EPNLQN
Sbjct: 661 -NHEIAEHVLQYRQATKLKNTYIDALPQLICDKTGRVHTSFRQDVAATGRLSSSEPNLQN 719

Query: 723 IPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           IPI+T+ G+ IR AF +      L+ ADYSQIELR+LAH +    L   + +  DIH  V
Sbjct: 720 IPIRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALIGAYHDDADIHTRV 779

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+   +V+  +RR AKTINF I+YG SPF LA  L I   EA DYI+ YF R+ G
Sbjct: 780 AAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPFGLAKTLGISNDEARDYIELYFQRYSG 839

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS----PKSSIRNIN--ERAAINAPIQGS 895
           +  ++  T    R  GYV T+ GRR     +      P+S  R++   ER AIN PIQG+
Sbjct: 840 VEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKLPESKRRSLTEPERIAINMPIQGT 899

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AM+ VH+ L+   L  ++LLQIHDEL+ E P+EE+   S +I  +M       
Sbjct: 900 AADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLESPDEELDALSDMIREAMTSV---- 955

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L VPLKV++     W +
Sbjct: 956 MELDVPLKVDVAHGRTWAD 974


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 335/977 (34%), Positives = 530/977 (54%), Gaps = 58/977 (5%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
           +L+D    +++ F+A P ++    G P NA+ GFC  L  L++  +     +      D 
Sbjct: 23  WLIDVFGVMFQVFHAIPPMTSPA-GQPTNAVFGFCRDLLWLIEKQKP----TWLICAMDS 77

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
           P    R   YP+YKANR ++PE L PQ+PL++   +AFG+P I+  G+EADD++A+    
Sbjct: 78  PGPGIRESWYPEYKANRTEMPEDLRPQIPLLKEVFEAFGLPIIQQDGWEADDVLASLAAQ 137

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
             + G  V I++ DKD  QL++P   +Y+  K    +   ++++WGI P+++V  Q L G
Sbjct: 138 FARHGTDVAIVTNDKDARQLLTPQIQIYNLRKMTWFNEASLLEEWGIRPDQVVDFQGLVG 197

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D++DN+PG+P +G K AA LLQ++  LE +L +A +    K +EN+  +AE ARLS+KLV
Sbjct: 198 DAVDNVPGVPLVGPKKAAALLQQFETLEGVLAHADQAPGAKLKENLKNFAEQARLSQKLV 257

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN---RVATTYDCDAANIEPVVL 304
            L T++ +    E       +  +L +  + L F KL++   RV       AA+      
Sbjct: 258 RLNTELQLDFDPEAGRHFRPDVEKLQALFRRLGFRKLVDEAARVLGQVPSSAAS------ 311

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              TT+N      + ++     + S FS+  + T        P K  L+RL++  +    
Sbjct: 312 ---TTQNSATTTPS-LNDGNPAENSLFSAPENNTV------VPSKP-LQRLERTWE---- 356

Query: 365 NDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                 +VNT + +    ++L  +      + T  +D    + +  AI+   Q       
Sbjct: 357 ------MVNTPEGLAALSRQLPLLTQICIDLETTGLDPLRDEIVGWAIAWAAQHGQPGRA 410

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-- 481
           V    +        D T        ++  LK   EN     I  N+K+D L + + GI  
Sbjct: 411 VYLPVLGPPGSVLLDGTA-------VVQTLKPILENPQCQLINQNVKFDLLAMRKVGIRP 463

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           +  G  D M+  Y+LD+G  SH++  + QK+LS       ++L S K+   +++I   +V
Sbjct: 464 ATIGL-DTMVGDYLLDAGARSHNLEVLGQKYLSAATIPISDLLGSGKNQKTMNQIEIERV 522

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            E+A E++ +++++  ++  +L    L  +Y+ ++KP+I V++ ME  GI++D   L++ 
Sbjct: 523 AEYATEDAELVVRMAPIIESQLQEAGLWKLYDEVEKPLIPVLADMEFKGIKVDVPELERQ 582

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+S  L  L   I++L+G +FN+ SP QL  ILF +LK P   KTKTG   +T Q++ 
Sbjct: 583 SQELSITLARLMSEIHELAGREFNIDSPMQLRKILFEELKLPVQKKTKTG--PSTDQEVL 640

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++    +P+   I E R L+K+K TY D+LP  ++ ++ R+HT ++     TGRL+S +P
Sbjct: 641 ELLAPLHPLPAKITEHRHLTKLKGTYLDALPLLVHPQSGRIHTSFNQVVAATGRLSSSDP 700

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+T  G +IRRAF+S  P  +L+ ADYSQIELR+LAH ++   L   FE+  DI
Sbjct: 701 NLQNIPIRTPEGSRIRRAFVSCDPEWRLVCADYSQIELRMLAHFSQDPALVSAFEHGEDI 760

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR+VAA++  V +E V+  MRR AK +NF ++YG SP+ L+  L I R  A  +I  YF 
Sbjct: 761 HRLVAAQVHQVALEDVTSDMRRIAKAVNFGVMYGQSPYGLSAALGISREAATTFIDEYFT 820

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN--ERAAINAPIQGS 895
           R+ G+  ++E   +     GY  TI GRR   + +  P+   RN N  ER  IN  IQGS
Sbjct: 821 RYAGVTTFMENVLDECLATGYARTILGRRRPIEGVRGPRERNRNRNMAERTGINTVIQGS 880

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI VH  LE      ++LLQIHDELV E P         ++   M KA LP 
Sbjct: 881 AADLIKMAMIRVHHRLERENHPGQLLLQIHDELVLEAPAHLAEELGALVSEEMTKA-LP- 938

Query: 956 INLRVPLKVNIKVSNNW 972
             L VPL+V++ +  NW
Sbjct: 939 --LDVPLEVDVAIGTNW 953


>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
 gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
 gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
          Length = 882

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 339/980 (34%), Positives = 532/980 (54%), Gaps = 110/980 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L ++DG+S I RAFYA P ++ K +GL  NAI GF  ML+K++   +     +H +V
Sbjct: 2   EKKLIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+  Y +YKA R  +P+ L  QL  ++     F I  +EI G+EADDII T
Sbjct: 57  AFDRKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFKINRLEIDGYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  AE +G+ V I++ DKD +QL S  T    T K     E+ +   VI+K+ + P + 
Sbjct: 117 VSKKAEDDGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPTQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PGIG KT   L++E+ ++EN+L N  ++K   +++ I E  E 
Sbjct: 177 IDLKGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLLENTDKLKGSVKKK-IEENKEI 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  S++L  +  DVPI + LE +I  D +   L+   +   FT L               
Sbjct: 236 AIQSKRLATIIRDVPIEVDLESMIFGDYDKDELLDKFRYFGFTSL--------------- 280

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                           S L D     ++EQ  +K+         
Sbjct: 281 -------------------------------LSRLVDLVDSNDTEQVEEKI--------- 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                     +I+  KDI++++ ++   G    K +    +      I I IS   +K  
Sbjct: 301 ----------EILKLKDIEKFIDEVNEKGQVILKTVRGQGNILEKNIIYIFISVDGEK-- 348

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++D            N ++K     L   F N    K G+N+K D + L  Y
Sbjct: 349 ------IYYVD-----------SNEVSK-----LDSIFSNNEIKKYGYNLKDDYISLKPY 386

Query: 480 GISMRG-FEDIMLMSYVLDSGRS-SHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
            I++   + DI +  Y++DS  S S+D ++IA K+LS    +++E+L     S   + + 
Sbjct: 387 NINLENMYFDITISEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLE 446

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + E+  +    + +   ++   L+   +  ++  ++ P+++V+  ME  GI++D+ +
Sbjct: 447 FEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSI 506

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S E  + + +LE+ IY+LSGE FN++SPKQLG ILF KL+ P   KTKTG + T A
Sbjct: 507 LDELSVEFKEIIATLEKEIYELSGEPFNINSPKQLGVILFEKLELPIIKKTKTG-YSTNA 565

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    +PII  I E+RQ+ K+ STY + L N IN  + R+H+ ++   T TGR++
Sbjct: 566 DVLEKLR-DKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQTITTTGRIS 624

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPIK ++G+KIR+ FI+    KL+ ADYSQ+ELR+LAH+++   + + F++ 
Sbjct: 625 STEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHH 684

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+++F V +E V+ ++R  AK +NF IIYG S F LA  L IP  +A +YI+ 
Sbjct: 685 EDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIES 744

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF ++  I E+++ T     ++GY  TI  RR +  EI S     RN  +R A+NAPIQG
Sbjct: 745 YFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQG 804

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI+VHK LE++ L +K++LQ+HDEL+ E  ++EI    +I+   ME A   
Sbjct: 805 SAADIIKIAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENA--- 861

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            +N+ V L V++ V ++W E
Sbjct: 862 -VNIDVHLDVDLNVGSSWYE 880


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 341/984 (34%), Positives = 533/984 (54%), Gaps = 82/984 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L  +L    K+   +H  +
Sbjct: 35  LFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAIMGFVNTLEDVL----KKENPTHIGI 88

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD+I T
Sbjct: 89  AFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEADDVIGT 148

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178
               A K G    +++ DKD  QLVS    +Y     +K    + +  +  K+ I  P +
Sbjct: 149 LATEAGKRGITTYMMTPDKDYGQLVSENVFMYRPKYGDKEFEVMGVNEIKAKFDIESPSQ 208

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEY 236
           ++ +  L GD+ DNIPG PG+G KTA  L+ ++G++EN+L N  ++K   K + EN    
Sbjct: 209 VIDMLGLMGDTADNIPGCPGVGEKTAQKLIAQFGSIENLLANTDQLKGAIKTKVEN---N 265

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E    S+ L  ++TDVPI++ +E L  E  +   L    + LEF  L++R+  T    A
Sbjct: 266 REQITFSKFLATIKTDVPISLDMEALKREQPDEEELRKIFEELEFRTLLDRILKTEKKTA 325

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           A   PV  D+                        F   S + +       P+   L RL+
Sbjct: 326 APSAPVQSDL------------------------FGFFSGENT-----DEPKNSNLTRLE 356

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L      +  Y  + + + I  ++Q + T    S    T   D   ++ + ++ S  + 
Sbjct: 357 DL------DFDYQLLDSEEKIDDFLQIIVTKDFFSLDTETTGTDPITAELVGMSFSFAEN 410

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                   +  ++ +  +  +           I+  LK   ENE  LKIG NIKYD LVL
Sbjct: 411 --------QAFYVPVPANREE--------ALAIVKKLKPIIENEKTLKIGQNIKYDMLVL 454

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPID 531
             YG+ +RG   D M+  YVL      H +  +A+ +L Y     +E++  + K+   + 
Sbjct: 455 GNYGVEVRGPMFDTMIAHYVLQP-ELHHGMDYLAEVYLKYETIKIEELIGPKGKNQKNMR 513

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +S + V ++A E+++V L+L  +L  +LI   +  +++ ++ P++ V++ ME  G++ID
Sbjct: 514 DLSPTSVYKYACEDADVTLKLKKVLEKELIENNVNELFQTIEMPLVPVLAYMERNGVRID 573

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQW 650
            + LK+ S   +  +  LEE ++ L+G +FN++SPKQ+G++LF +LK    AK TKTGQ+
Sbjct: 574 TEALKETSQHFTARMKQLEEEVHQLAGMEFNIASPKQVGEVLFDRLKITDKAKKTKTGQY 633

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T+ + LE +  G + I+  ILE R L K+  TY D+LP  IN +T  +HT ++   T T
Sbjct: 634 VTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINPKTGHIHTSFNQTVTAT 692

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIPI+ + G++IRRAFI     +  SADYSQIELRI+AH++    + + 
Sbjct: 693 GRLSSSNPNLQNIPIRNEDGKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEA 752

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIH   AA+I+   +E V+ + R  AKT NF IIYGIS F LA +L I R EA +
Sbjct: 753 FQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVFGLAERLNIERKEAKE 812

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  YF  +P + EY++++    ++ GY+ETIF R+ +  +INS  + +R   ER AINA
Sbjct: 813 LIDGYFENYPHVKEYMDQSIRLAQEKGYIETIFKRKRYLPDINSRNAVVRGYAERNAINA 872

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI ++K   +  + +KM+LQ+HDEL F V  EE      I++  ME 
Sbjct: 873 PIQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDELNFSVVPEEKEKVQHIVISEMEA 932

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      ++VPL+ +     NW E
Sbjct: 933 AY----KMKVPLQADCDWGKNWLE 952


>gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
 gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
          Length = 896

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 349/989 (35%), Positives = 546/989 (55%), Gaps = 110/989 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M     LFL+D  + IYR++YA    P ++    G+  +A  GFCN L +LL+  +    
Sbjct: 1   MSDPKTLFLLDAYALIYRSYYAFINNPRITTT--GINTSATFGFCNFLIELLELEK---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFD    TFR+E+Y  YKA RP +PE L   +P ++      GI  ++  G+EA
Sbjct: 55  PTHIAVIFDPEGPTFRHEMYTPYKAQRPPMPEDLRKSIPYIKKIIAGLGISCLDAPGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWG 173
           DD I T    AEKEG+ V +I+ DKD  QLVS    +Y       K E   I  V+  +G
Sbjct: 115 DDFIGTLAKRAEKEGYTVYMITPDKDYAQLVSEKVFMYKPGRSGNKSEVWGIPEVLDHFG 174

Query: 174 IPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           I   ++++ +  L GD+ DN+PG  GIG K+AA L+ +YG+++ I  +   +K  K+R+N
Sbjct: 175 IERVDQVIDILGLMGDTADNVPGCSGIGPKSAAALVYKYGDIDGIYAHIDELK-GKQRQN 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +L+   T  LSR LV + T+VP  I  E L  +  +   L    K LE   L+ RV    
Sbjct: 234 LLDCQPTVHLSRTLVTICTEVPTDITPEDLEKKHIDVKILDPIFKELELFSLVKRV---- 289

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                                  + T+I+ DT+                           
Sbjct: 290 -----------------------LNTDIEEDTS--------------------------- 299

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
              +KLS   +   SYT   +++D    +QKLE     +  ++      ++S P  +  S
Sbjct: 300 ---EKLSDIKV---SYTD--HSQDPASLLQKLEEADLYALYVVFKNGTLYNSWPTHLCFS 351

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T           E  +I+L          KN   + IL + +  FEN++ + I  ++K D
Sbjct: 352 TKLH--------EVSYINLP-------NDKNKALEIILQF-QAIFENKNKILISADVKND 395

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSS 527
            + L R GI ++    DI +  YVL     SHD+  +A ++L+Y    ++KE    ++ +
Sbjct: 396 IIWLKRAGIKLKNDIFDIKIAHYVLHPD-ISHDLGRVALEYLNYKLSGSKKE---DQQLT 451

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +  D+ + ++  + A E ++VI QL   L   L    LL +Y  ++ P++ V++ ME  G
Sbjct: 452 LQFDEEAGTEDNDFA-EKTDVIFQLHEKLCDDLQQTGLLALYNNIEMPLVFVLADMEYEG 510

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTK 646
           + ID + L+ +S+E+ + +  +E+ IY+L+ ++FN+SSPKQLG++LF KLK  S   KTK
Sbjct: 511 VSIDCNELQSISSELKERIDIIEKEIYELAHQEFNISSPKQLGEVLFDKLKIDSNHKKTK 570

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +GQ+ T+ Q L ++   ++PII  IL++R L K+ +TYA++LP+ I+  T ++HT ++ A
Sbjct: 571 SGQYSTSEQVLVKLE-DEHPIINKILDYRGLKKLLTTYAEALPSFIDPGTGKIHTHFNQA 629

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKIT 765
              TGRL+SL PNLQNIPI+T+ G+KIR+AF++     L  SADYSQ+ELR++AH+++  
Sbjct: 630 EAATGRLSSLNPNLQNIPIRTEEGRKIRKAFVTGNDDYLFFSADYSQVELRLMAHLSQDK 689

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F + +D+H   A++I+ V +E+V+P+MRR AKT NF IIYGIS + LA +L I R
Sbjct: 690 ELIHAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTANFGIIYGISAWGLAERLHISR 749

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            E  + I  YF  +PG+ +Y+E++    R+  +VETI GRR +  +INS  + +R + ER
Sbjct: 750 KEGKELIDGYFDLYPGVKKYMEESVEKARKKEFVETIMGRRRYLRDINSRNAVVRGMAER 809

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAPIQGSAADI + AMI + K +++  L ++M++Q+HDEL F+  + E      ++ 
Sbjct: 810 NAINAPIQGSAADIIKMAMICIQKRIQEEGLMSRMIIQVHDELNFKCHKSEQYLLKSLVT 869

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + ME      I L VPL V+    NNW E
Sbjct: 870 NCMEHV----IKLSVPLTVSTGFGNNWYE 894


>gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
 gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
          Length = 909

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 352/984 (35%), Positives = 540/984 (54%), Gaps = 114/984 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S I RAF+A P +    DGL  NAI GF  M++K++   R     +H +V FD
Sbjct: 22  LLLIDGNSIINRAFFALPPMDN-GDGLHTNAIYGFLTMMFKMIDLYR----PTHISVAFD 76

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR + Y  YKA R K+   L  QL  ++       +   EI G+EADDI+ T + 
Sbjct: 77  VKAPTFRYKSYESYKAGRKKMMPELASQLGPMKEVLDVLNVDRKEIAGYEADDILGTVSL 136

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AEK G+ V +++ D+D +QL S  T +  T K     E+ + E V +++ + P++ + L
Sbjct: 137 DAEKAGYKVYVVTGDRDAIQLASDMTTVLITKKGVGEVEEYNREGVYERYQLSPDQFIDL 196

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYAETA 240
           + L GD  DNIPGIPGIG KT   LL EYG++E +L N  ++K  QKK+ E   E  E+A
Sbjct: 197 KGLMGDKSDNIPGIPGIGEKTGIKLLLEYGSVEGVLSNVDKLKGAQKKKVE---ENMESA 253

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+S+ L  +  DVPI   LE ++  D    R+I   + L+F  LI++V+           
Sbjct: 254 RMSKDLATIMRDVPIDFDLESMVFGDFETSRVIEKFQELKFNSLISKVS----------- 302

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
               D++  E+K    E EID    I+  Q  +++D              F+ R+++ S+
Sbjct: 303 ----DLSGIEDK----EREID---LIRLDQ-DNIAD--------------FIARVKEGSE 336

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I                             K I  + +      I++ ++T D+ D  
Sbjct: 337 LYI-----------------------------KTIARSGNILEKNIISMYLATSDESDKA 367

Query: 421 S-FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             +K+   ++D  +  S        + KEI+       E+E   KIG NIK D + L  Y
Sbjct: 368 DPYKI--YYMDKELAES--------MPKEIVD----LIEDEDIEKIGCNIKSDYINLRPY 413

Query: 480 GISMR--GFEDIMLMSYVLDSGRS-SHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
           GI +   GF DI +  Y++DS  S S+D   IA K++     + +++L     +   + I
Sbjct: 414 GIRLGKIGF-DISIAEYIIDSKTSTSYDFDVIASKYIYKKMTSEEDLLGKGAKAKKYEDI 472

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI---VEKLLHVYERLDKPMIDVVSQMEITGIQI 590
               + + AI   N +  +   +R  +    +EKLL+  E    P+I+V+  ME  GI +
Sbjct: 473 EKEDLDKFAIGIMNTLSGVVPKMRQIIKDDDMEKLLYDVE---IPLIEVLGDMEYIGIHV 529

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D+  L ++    +  +  LE  IYD+SGEKFN++SPKQLG ILF KL+ P   KTKTG +
Sbjct: 530 DKKTLDELGVLFNDRIKYLETKIYDISGEKFNINSPKQLGLILFEKLELPVIKKTKTG-Y 588

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A+ LE++    +PII  I ++R + K+KSTY + + N IN    R+H+ ++ A   T
Sbjct: 589 STNAEVLEKLR-DKHPIIDMITDYRTVVKLKSTYVEGINNLINPLDGRIHSSFNQAIATT 647

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR++S +PN+QNIP++TDLG+++RR F++    KL+ ADYSQ+ELR+LA ++    + + 
Sbjct: 648 GRISSTDPNMQNIPVRTDLGRQLRRVFVAGQGSKLVDADYSQVELRVLADMSGDEDMIEA 707

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+  +DIHR  A+++FGV  ++VS ++R  AK +NF IIYG S F LA  L I  ++A +
Sbjct: 708 FDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGIIYGKSDFGLAKDLDISIAKAKE 767

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI+ YF RFP I  +++   +   + GY  TIFGRR +  EI S     +N   RAA+NA
Sbjct: 768 YIENYFARFPKIKGFMDHIVSDAEEKGYSTTIFGRRRYIPEIKSSNFVEKNRGIRAAMNA 827

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AM++VH  LE+  L + ++LQ+HDEL+ E P EE+     ++   ME 
Sbjct: 828 PIQGSAADIIKIAMVNVHNRLEEEGLKSNLILQVHDELIVESPIEEVERVRVLLKEEMEN 887

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    +NL+V L V++ V ++W E
Sbjct: 888 A----VNLKVNLDVDLNVGDSWYE 907


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 348/995 (34%), Positives = 543/995 (54%), Gaps = 83/995 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M + + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 7   MNQNSKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD P  TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 61  PTHIGVAFDPPGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIKAYRIPILEVAGYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173
           DD+I T    A  +G    +++ DKD  QLV+    +Y     +K    + +E V  K+ 
Sbjct: 121 DDVIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKFD 180

Query: 174 I-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           I  P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + 
Sbjct: 181 IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK- 239

Query: 233 ILEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
                ET R     S+ L  ++ DVPI + +  L+ E  +   L    + LEF  L+ R+
Sbjct: 240 ----VETNREMIIFSKFLATIKVDVPIRLDMNSLVREQADEDTLRKIFEELEFRTLMERI 295

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
              +  +++   P+   +   EN  +               Q +   + T    +E+  +
Sbjct: 296 ---FKKESSPASPIAGTLFNQENGPV---------------QGNLFEEFTPDYTNEE--K 335

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           K  LE L  LS        Y  I   +   + ++KL T    +    T   D   ++ + 
Sbjct: 336 KSNLESLNSLSY------DYQLIDTEEKRNEIIKKLLTSEILALDTETTGTDPMDAELVG 389

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKI 465
           ++ S  +         +  ++ +               KE +  +++F   F+NE  LK+
Sbjct: 390 MSFSITEN--------QAFYVPVPAER-----------KEAIKIVREFEPVFKNEKSLKV 430

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
           G NIKYD LVL  YGI +RG   D M+  YVL      H++  +A+ +L Y     +E++
Sbjct: 431 GQNIKYDMLVLQNYGIEVRGKLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELI 489

Query: 522 KSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
             + K    +  +S  +V  +A E+++V L+L  +L  +L       ++  ++ P++ V+
Sbjct: 490 GPKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVL 549

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             +E  G+++D + LKQ S   +  L S+E+ IY L+  +FN++SPKQ+G+ILF KLK  
Sbjct: 550 VNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEFNIASPKQVGEILFDKLKIV 609

Query: 641 SGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
             AK TKTGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN +T R+
Sbjct: 610 EKAKKTKTGQYVTSEEVLESLR-NKHDIIGKILEYRGLKKLLSTYIDALPQLINPKTGRI 668

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+A
Sbjct: 669 HTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMA 728

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   +   F +  DIH   AA+I+ V+I++V+  MRR AKT NF IIYGIS F LA 
Sbjct: 729 HLSEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAE 788

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ + R EA + I  YF  +P +  Y++K+    R++GYVETIF R+    +INS  + +
Sbjct: 789 RMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVV 848

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAPIQGSAADI + AM  +++  +   L  KM+LQ+HDEL F VP +E   
Sbjct: 849 RGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEI 908

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q+++  MEKA      + VPLK +     NW E
Sbjct: 909 VEQVVIEEMEKAY----RMHVPLKADCGWGTNWLE 939


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
          Length = 935

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 350/993 (35%), Positives = 544/993 (54%), Gaps = 79/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M + + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MNQNSKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD P  TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPPGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIKAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173
           DD+I T    A  +G    +++ DKD  QLV+    +Y     +K    + +E V  K+ 
Sbjct: 115 DDVIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKFD 174

Query: 174 I-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           I  P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + 
Sbjct: 175 IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK- 233

Query: 233 ILEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
                ET R     S+ L  ++ DVPI + +  L+ E  +   L    + LEF  L+ R+
Sbjct: 234 ----VETNREMIIFSKFLATIKVDVPIRLDMNSLVREQADEDTLRKIFEELEFRTLMERI 289

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTP 347
              +  +++   P+   +   EN              ++ + F   + D T++       
Sbjct: 290 ---FKKESSPASPIAGTLFNQEN------------GPVQGNLFEEFTPDHTNE------E 328

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           +K  LE L  LS        Y  I   +   + ++KL T    +    T   D   ++ +
Sbjct: 329 KKSNLESLNSLSY------DYQLIDTEEKRNEIIKKLLTSEILALDTETTGTDPMDAELV 382

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            ++ S  + +   +F V        V   ++   K      I+   +  F+NE  LK+G 
Sbjct: 383 GMSFSITENQ---AFYV-------PVPAEREEAIK------IVREFEPVFKNEKSLKVGQ 426

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           NIKYD LVL  YGI +RG   D M+  YVL      H++  +A+ +L Y     +E++  
Sbjct: 427 NIKYDMLVLQNYGIEVRGKLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGP 485

Query: 524 R-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           + K    +  +S  +V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  
Sbjct: 486 KGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVN 545

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G+++D + LKQ S   +  L S+E+ IY L+  +FN++SPKQ+G+ILF KLK    
Sbjct: 546 IESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEFNIASPKQVGEILFDKLKIVEK 605

Query: 643 AK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           AK TKTGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN +T R+HT
Sbjct: 606 AKKTKTGQYVTSEEVLESLR-NKHDIIGKILEYRGLKKLLSTYIDALPQLINPKTGRIHT 664

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+
Sbjct: 665 SFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHL 724

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   +   F +  DIH   AA+I+ V+I++V+  MRR AKT NF IIYGIS F LA ++
Sbjct: 725 SEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERM 784

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            + R EA + I  YF  +P +  Y++K+    R++GYVETIF R+    +INS  + +R 
Sbjct: 785 NVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRG 844

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER AINAPIQGSAADI + AM  +++  +   L  KM+LQ+HDEL F VP +E     
Sbjct: 845 YAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVE 904

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q+++  MEKA      + VPLK +     NW E
Sbjct: 905 QVVIEEMEKAY----RMHVPLKADCGWGTNWLE 933


>gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 350/993 (35%), Positives = 544/993 (54%), Gaps = 79/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M + + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 7   MNQNSKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD P  TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 61  PTHIGVAFDPPGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIKAYRIPILEVAGYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173
           DD+I T    A  +G    +++ DKD  QLV+    +Y     +K    + +E V  K+ 
Sbjct: 121 DDVIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKFD 180

Query: 174 I-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           I  P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + 
Sbjct: 181 IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK- 239

Query: 233 ILEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
                ET R     S+ L  ++ DVPI + +  L+ E  +   L    + LEF  L+ R+
Sbjct: 240 ----VETNREMIIFSKFLATIKVDVPIRLDMNSLVREQADEDTLRKIFEELEFRTLMERI 295

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTP 347
              +  +++   P+   +   EN              ++ + F   + D T++       
Sbjct: 296 ---FKKESSPASPIAGTLFNQEN------------GPVQGNLFEEFTPDHTNE------E 334

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           +K  LE L  LS        Y  I   +   + ++KL T    +    T   D   ++ +
Sbjct: 335 KKSNLESLNSLSY------DYQLIDTEEKRNEIIKKLLTSEILALDTETTGTDPMDAELV 388

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            ++ S  + +   +F V        V   ++   K      I+   +  F+NE  LK+G 
Sbjct: 389 GMSFSITENQ---AFYV-------PVPAEREEAIK------IVREFEPVFKNEKSLKVGQ 432

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
           NIKYD LVL  YGI +RG   D M+  YVL      H++  +A+ +L Y     +E++  
Sbjct: 433 NIKYDMLVLQNYGIEVRGKLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGP 491

Query: 524 R-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           + K    +  +S  +V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  
Sbjct: 492 KGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVN 551

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G+++D + LKQ S   +  L S+E+ IY L+  +FN++SPKQ+G+ILF KLK    
Sbjct: 552 IESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEFNIASPKQVGEILFDKLKIVEK 611

Query: 643 AK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           AK TKTGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN +T R+HT
Sbjct: 612 AKKTKTGQYVTSEEVLESLR-NKHDIIGKILEYRGLKKLLSTYIDALPQLINPKTGRIHT 670

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+
Sbjct: 671 SFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHL 730

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   +   F +  DIH   AA+I+ V+I++V+  MRR AKT NF IIYGIS F LA ++
Sbjct: 731 SEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERM 790

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            + R EA + I  YF  +P +  Y++K+    R++GYVETIF R+    +INS  + +R 
Sbjct: 791 NVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRG 850

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER AINAPIQGSAADI + AM  +++  +   L  KM+LQ+HDEL F VP +E     
Sbjct: 851 YAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVE 910

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q+++  MEKA      + VPLK +     NW E
Sbjct: 911 QVVIEEMEKAY----RMHVPLKADCGWGTNWLE 939


>gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76]
          Length = 916

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 345/963 (35%), Positives = 517/963 (53%), Gaps = 76/963 (7%)

Query: 31  DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM 90
           DG P  A+ G  NML +L    R E    + AV+FD     FR++++ +YKA RP +P+ 
Sbjct: 9   DGAPTGALYGVLNMLRRL----RSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDD 64

Query: 91  LLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           L PQ   LP LVRL     G P + I   EADD+I T      + G  V + + DKD+ Q
Sbjct: 65  LRPQAEALPDLVRLT----GWPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQ 120

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           LV     L +T+  E +DIE V  K+G+ P+++    AL GD +DN+PG+   G KTA  
Sbjct: 121 LVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVK 180

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            L+ YG+L  ++ +AS IK  K  EN+        LS  LV ++TDV +     H  L D
Sbjct: 181 WLEAYGSLAGVMEHASEIK-GKVGENLQAALPQLPLSYDLVTIKTDVDL-----HAELSD 234

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
                           + + R    +         +V+D      +    E E + +T  
Sbjct: 235 G--------------IESLRRTTPKW-------AQLVVDFKRWGFRTWLKEAESNMNTGS 273

Query: 327 KTSQFSSLS-DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
               F S S  + + +N+E     +  E+  + +  P   D Y  +         + KL 
Sbjct: 274 TDDLFGSDSIGEQAALNAE-----MPFEKQAEKATAPEKLD-YQAVTTEAQFAALLDKLS 327

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNT 444
              +      T ++DA ++  + I+I+         F+  E ++I   V  S  +  +  
Sbjct: 328 RADTIGIDTETTSLDAMNASLVGISIA---------FQAGEAVYI--PVGHSLTAAPEQL 376

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503
             +++L  LK    N    KIG N+KYD+ V   YGI++ G   D ML SY+++S    H
Sbjct: 377 DLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYIIES-HLGH 435

Query: 504 DIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +  ++++WL     T + +       I    ++  Q  E+A ++++  L+L   LR ++
Sbjct: 436 GLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQM 495

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
             EK L +YE+++ P+  V+ +ME  G+QID+  L + SAE+   L+ LE+  Y  +G+ 
Sbjct: 496 D-EKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 554

Query: 621 FNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           FNL+SPKQL +ILF K+  P+    KT  G   T    LEQ+   D P+ K IL+ R L+
Sbjct: 555 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSLA 613

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+KSTY D LP  I+ +  RVHT Y+ A  +TGRLAS  PNLQNIPI+T+ G+K+RRAF 
Sbjct: 614 KLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFT 673

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           +P    ++SADYSQIELRI+AH++    L   F+N  D+HR  AAE+FG   E VS + R
Sbjct: 674 APQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQR 733

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R+AKTINF +IYG+  + LA  L I    A ++I RYF R+PG+ EY+++TK      GY
Sbjct: 734 RYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGY 793

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE------ 912
           VET+FGRR++  +I +  ++ R   ERAAINAP+QG+A+D+ +RAMI V + L       
Sbjct: 794 VETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASP 853

Query: 913 -DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
            D  L +K+++Q+HDELV EV E E+    + +   M K  +    L VPL   + V  N
Sbjct: 854 WDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAK--VDGGLLDVPLVAEVGVGEN 911

Query: 972 WQE 974
           W+E
Sbjct: 912 WEE 914


>gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 931

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 348/984 (35%), Positives = 537/984 (54%), Gaps = 73/984 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA   +P ++ K  G   +A+ GF N L +LL   RKE+  +H AV
Sbjct: 3   LFLLDAYALIYRSYYAFIKSPRVNSK--GQNTSAVFGFVNTLEELL---RKEN-PTHIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD P  TFR++ Y  YKA R + PE +   +PL++    A+ I  +E+  +EADD+I T
Sbjct: 57  AFDPPGGTFRHDAYELYKAQRQETPEDIRAAVPLIKEIIAAYNIKELEVARYEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----TVKEEKIDIEHVIKKWGIP-PEK 178
               AEKE F V +++ DKD  QL S    +Y         + +D + +++K+ +  P +
Sbjct: 117 IAKKAEKENFDVYMMTPDKDYGQLTSDHIFMYKPKFAGTGFDTLDAKAIMEKYELSSPGQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEY 236
           M+ L  L GD+ DNIPG PG+G KTA  LL+EYG +EN+L + + +K   K R E   E 
Sbjct: 177 MIDLLGLMGDASDNIPGCPGVGPKTAQKLLEEYGTIENLLEHTADLKGTLKLRLE---EN 233

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E    S+ L  ++TDVPI         ++ N  +L +  + LEF  LINRV      D 
Sbjct: 234 KEQIIFSKFLATIKTDVPIEFNKNEFKRQEINAEKLSNLFEELEFRTLINRVLKK---DG 290

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV   I TT                I+   F+ L    +     ++   +    LQ
Sbjct: 291 TPANPV--RITTTHE-------------AIQGDLFAELLPPKA-----ESADTVNYSGLQ 330

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +L   P    +Y  +    +I    + + +  S  F   T  +D   S+ + ++ +  + 
Sbjct: 331 ELKDIP---HTYHLVEKDDEIANLAKTIASQQSCCFDTETTGLDPNVSELVGMSFAFREG 387

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                   E  ++ +     +         K I+   + FFEN    KIG NIKYD +VL
Sbjct: 388 --------EAYYVPVPADFEK--------AKAIVEQFRPFFENGETEKIGQNIKYDIIVL 431

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPID 531
            +YGI +RG   D M+  Y+++     H++  +A+ +L Y      E++ SR K+ + + 
Sbjct: 432 KKYGIHVRGRLFDTMIAHYLINP-ELRHNMDYMAETYLKYKTIHIDELIGSRGKNQLNMR 490

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +   Q++++A E++++ L+L  +L   +  + L  +   ++ P+I V++ ME TG+++D
Sbjct: 491 SLRPDQIKDYACEDADITLKLKAILEKAIEKQDLGKLLYDIELPLIYVLADMEYTGVRLD 550

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQW 650
           +  L + S  ++  L  +E  IY  + ++FN++S KQ+G++LF KLK      KTKTGQ+
Sbjct: 551 KTALAEYSKTLTLELQGIESEIYKAAEQEFNINSAKQVGEVLFDKLKIVEKPKKTKTGQY 610

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T+ + LE +    + I+  ILE+R L K+ STY D+LP  ++    ++HT Y+   T T
Sbjct: 611 VTSEETLESMKDA-HSIVGKILEYRGLKKLLSTYIDALPLLVSPLDDKLHTSYNQTVTAT 669

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIPI+   G++IR+AFI+       SADYSQIELRI+AH+++   +   
Sbjct: 670 GRLSSSNPNLQNIPIRDAQGKEIRKAFIADEACIFFSADYSQIELRIMAHLSQDPTMIDA 729

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH   AA+I+ + I +V+  MRR AKT NF IIYGIS F LA +L IPR EA +
Sbjct: 730 FNSGEDIHAATAAKIYKIPISEVTGDMRRKAKTANFGIIYGISVFGLAERLSIPRGEAKE 789

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  YF  +P + EY++K+ +  R N YVET+FGR+ +  +INS  +++R   ER AINA
Sbjct: 790 LIDGYFATYPKVKEYMDKSISVARTNNYVETVFGRKRYLPDINSRNTTVRGYAERNAINA 849

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AM  +    E   + +KM+LQ+HDEL F V   E+    +I++  ME 
Sbjct: 850 PIQGSAADIIKVAMNRIFDRFERENIKSKMILQVHDELNFNVESNELDKVQKIVIEEMEN 909

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L VPLK +     NW E
Sbjct: 910 A----YKLVVPLKADCGKGKNWLE 929


>gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355]
          Length = 908

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 344/956 (35%), Positives = 517/956 (54%), Gaps = 70/956 (7%)

Query: 31  DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM 90
           DG P  A+ G  NML +L    R E    + AV+FD     FR++++ +YKA RP +P+ 
Sbjct: 9   DGAPTGALYGVLNMLRRL----RSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDD 64

Query: 91  LLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           L PQ   LP LVRL     G P + I   EADD+I T      + G  V + + DKD+ Q
Sbjct: 65  LRPQAEALPDLVRLT----GWPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQ 120

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           LV     L +T+  E +DIE V  K+G+ P+++    AL GD +DN+PG+   G KTA  
Sbjct: 121 LVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVK 180

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            L+ YG+L+ ++ +AS IK  K  EN+        LS  LV ++TDV +     H  L D
Sbjct: 181 WLEAYGSLQGVMEHASEIK-GKVGENLRAALPRLPLSYDLVTIKTDVDL-----HAELSD 234

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
                           + + R A  +         +V+D      +    E E + +T  
Sbjct: 235 G--------------IESLRRTAPKW-------AQLVVDFKRWGFRTWLKEAESNMNTGS 273

Query: 327 KTSQFSSLS-DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
               F S S  + + +N+E   +K    + +K +  P   D Y  +         + KL 
Sbjct: 274 TDDVFGSDSIGEQAALNAEMPSEK----QAEKATA-PERLD-YQAVTTEAQFAALLDKLS 327

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNT 444
              +      T ++DA ++  + I+I+         F+  E ++I   V  S  +  +  
Sbjct: 328 RANTIGIDTETTSLDAMNASLVGISIA---------FQAGEAVYI--PVGHSLTAAPEQL 376

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503
             +++L  LK    N    KIG N+KYD+ V   YGI++ G   D ML SY+++S    H
Sbjct: 377 DLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYIIES-HLGH 435

Query: 504 DIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +  ++++WL     T + +       I    ++  Q  E+A ++++  L+L   LR ++
Sbjct: 436 GLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQM 495

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
             EK L +YE+++ P+  V+ +ME  G+QID+  L + SAE+   L+ LE+  Y  + + 
Sbjct: 496 D-EKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQP 554

Query: 621 FNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           FNL+SPKQL +ILF K+  P+    KT  G   T    LEQ+   D P+ K IL+ R L+
Sbjct: 555 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSLA 613

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+KSTY D LP  I+ +  RVHT Y+ A  +TGRLAS  PNLQNIPI+T  G+++RRAF 
Sbjct: 614 KLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFT 673

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           +P    ++SADYSQIELRI+AH++    L   F+N  D+HR  AAE+FG   E VS + R
Sbjct: 674 APQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQR 733

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R+AKTINF +IYG+  + LA  L I    A ++I RYF R+PG+ EY+++TK      GY
Sbjct: 734 RYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGY 793

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           VET+FGRR++  +I +  ++ R   ERAAINAP+QG+A+D+ +RAMI V   L D  + +
Sbjct: 794 VETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSD-GIGS 852

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K+++Q+HDELV EV E E+    + +   M K  +    L VPL   + V  NW+E
Sbjct: 853 KLVMQVHDELVLEVVETELDFVKEKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 906


>gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9]
 gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9]
          Length = 908

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 350/977 (35%), Positives = 530/977 (54%), Gaps = 84/977 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSSF+YRA +A P L R  DG P  AI G  NM+    + ++  S   + A +FD
Sbjct: 5   LLLVDGSSFLYRAHFAMPNL-RSPDGEPSGAIFGLINMM----KRTQIVSKPDYIACVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+E+Y +YK++RP +P+ +  Q+  +  A +A G   I   G EADDIIAT   
Sbjct: 60  APGRTFRHELYTEYKSHRPPMPDDMRTQIEPIHQAIEALGWTIIMQSGVEADDIIATIAD 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +     I ++DKD+ QLV     +  T KEE +D   V++K+G+ P++++    L 
Sbjct: 120 FAINQNIKCVIATSDKDIAQLVDDNISII-TGKEEILDSNGVLEKYGVRPDQIIDYLMLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET--ARLSR 244
           GD+ DNIPG+  +G KTA   L E+G+L                EN+L+ A +   ++++
Sbjct: 179 GDTSDNIPGVDKVGPKTATKWLNEFGSL----------------ENLLKNAGSLKGKVAQ 222

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L+  ++   +T  L                            V    DCD +     + 
Sbjct: 223 NLIEAQSQFDLTRKL----------------------------VTIKKDCDISKWVKSID 254

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D+   E K   +  EI      KT     L D  S  N     +K   E++   ++  I 
Sbjct: 255 DLLPKE-KNFDVLKEIYTRFGFKTF----LKDLESIDNLPTLQRKKDEEKVDIATEKTIK 309

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            + Y  +     ++  +++++     +    T+++D   ++ + I++ST   K       
Sbjct: 310 TN-YVLVDTIDKLESCLEEIKQANLVALDTETNSLDQLKTRLVGISLSTDIGK------- 361

Query: 425 ETIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              +I ++    Q   G N L K E+L  ++ + E+E   KI  N KYD  V    GI +
Sbjct: 362 -AWYIPVA---HQVELGCNQLMKAEVLEAMRSWLESEQKTKILQNAKYDMHVFANEGIVL 417

Query: 484 RGFE-DIMLMSYVLDS----GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           +G + D M+++YV+D+    G  +  +  + +K LSY  +EI      +I  D +   Q 
Sbjct: 418 KGIKHDTMVLAYVIDTNQRVGLEALSLKYLNRKGLSY--EEICGKGAKAITFDYVPLDQA 475

Query: 539 QEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            ++A E+++    L   L PKL   E L  +Y+ L+  ++ V+  ME  G+ ID   L  
Sbjct: 476 TQYACEDADFTFHLLTELLPKLEGFEGLKFIYD-LEMQVLQVLFDMERVGVLIDSSKLLS 534

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S  IS  L  LE  I++L+GE+FN++SPKQL +ILFTKLK  +  KT+TG   T    L
Sbjct: 535 QSEIISCRLSKLESEIFNLAGEEFNINSPKQLSEILFTKLKLETQGKTRTGVISTNEDAL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D+PI  ++LE+R LSK+KSTY D LP  INK T RVHT +S  + ++GRL+S +
Sbjct: 595 EKLAL-DHPIAVHLLEYRSLSKLKSTYTDKLPTMINKVTGRVHTVFSQTTVLSGRLSSFD 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+ + G+++R+AF++    KL+SADYSQ+ELR++AHI+    + + F+   DI
Sbjct: 654 PNLQNIPIRNEDGRQVRQAFVAEDGFKLMSADYSQVELRLMAHISNDEGMLKAFKEGADI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  A+E+FGV + +V    RR AK INF +IYG+  F LA  L I R  A +YI +YF 
Sbjct: 714 HRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMGAFALANNLGISRETAQNYIYKYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RFP + ++++  K    Q+GYVETI+GRRI+   I   K + +   ER AINAP+QGSAA
Sbjct: 774 RFPKVRKFMDDIKIQASQDGYVETIYGRRIYIPGIQDSKGARKAALERVAINAPVQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMISVHK +  +KL ++++LQ+HDELV EV E EI      +   ME        
Sbjct: 834 DIIKMAMISVHKWISQNKLNSRIILQVHDELVLEVHESEIEILKLKLPKLMEDVA----K 889

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL+  + V +NW E
Sbjct: 890 LDVPLEAQVNVGSNWDE 906


>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
 gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
          Length = 901

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 355/982 (36%), Positives = 529/982 (53%), Gaps = 109/982 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RAFYA P L+ +  G P  A+ G   ML +L  + +     ++FAV+FD
Sbjct: 8   VVLVDGSSYLFRAFYALPPLTTQK-GHPTGAMHGVIKMLMRLYDDYQP----NYFAVVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR++IYPDYKANRP +PE L  Q+ PL +L T A G P I   G EADD+I T  
Sbjct: 63  AAGKTFRHQIYPDYKANRPPMPEDLAVQIQPLHQLIT-ALGFPLIMESGVEADDVIGTLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ- 183
             A  E + V I S DKD+ QL++     L DT+K E I    V K++ I  E++   Q 
Sbjct: 122 RQALAEDYQVIISSGDKDMTQLLTHADITLLDTMKNETITASDVAKRFKI--EQLTAAQV 179

Query: 184 ----ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD  DNIPG+  +G KTA   L  YG+L+ I+ NA +I+  K  +N+      
Sbjct: 180 IDFLALVGDKSDNIPGVEKVGAKTAEKWLATYGSLDAIIENADKIR-GKVGDNLRAGLAQ 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            + S++L  +      T+ L + I +   G      L AL              C     
Sbjct: 239 LKCSQQLATINQ----TLDLPYRIADLARGAENPHKLAAL--------------C----- 275

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                ++N  +N+ +                      +T+ + + + P+KL    +Q ++
Sbjct: 276 --AQYELNDIQNRYL----------------------KTTAVAAPKAPEKLHYHLIQTIA 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +                     +KL    +  F + TD+++   +  + I          
Sbjct: 312 E----------------CNALCEKLAQKSAFVFDVETDSLNYMQAHWVGI---------- 345

Query: 420 TSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            SF VE     ++ L VH +    G N    E L+ LK  FEN    KIG ++K+D+ +L
Sbjct: 346 -SFAVEAGEAWYLPL-VHQN----GINLPFAETLAALKNLFENASIRKIGQHLKFDRHIL 399

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            RYGIS+ G  +D MLMSY  +S  + H++  +A  +L+      ++I  S       D+
Sbjct: 400 ARYGISLNGVIDDTMLMSYCYNSTATRHNMDDLADFYLNKQTIRFEDIAGSGAKQRRFDE 459

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQID 591
           I      ++A E++++ LQL+   + KL  E  L  +YE +++P+ +++  ME  G++I 
Sbjct: 460 IDLETAMQYACEDADITLQLYQFFQQKLASEPTLQALYENVERPLAEILWAMEHQGVKIA 519

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D L   S E++  L +L++  Y L+G  FNL SPKQL +ILF +L  P   KT TGQ  
Sbjct: 520 GDKLAVQSQELAAQLKTLQKQAYQLAGGVFNLDSPKQLQEILFERLALPVIHKTPTGQAS 579

Query: 652 TTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           T  + L+++     + + + IL +R L K+KSTY D LP  I+  ++RVHT Y  A T T
Sbjct: 580 TNEEVLQKLAELRQSALPEIILNYRALGKLKSTYTDKLPELIDPDSKRVHTSYHQAVTST 639

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI++D G++IR+AFI+     +++ADYSQIELRI+AH+++   L + 
Sbjct: 640 GRLSSSDPNLQNIPIRSDEGRRIRQAFIAEEGYSILAADYSQIELRIMAHLSQDERLQRA 699

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIH   AAE+F V  E V    RR AK INF +IYG+S F LA QL I R++AA+
Sbjct: 700 FQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAINFGLIYGMSAFGLARQLNISRTQAAE 759

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI +YFHR+P +  Y++  +   +Q GYV T+ GRR++  +I++     R   ER AINA
Sbjct: 760 YIDKYFHRYPQVLAYMDSARQTAQQQGYVSTLLGRRLYIPDIHNKNMQRRRAAERLAINA 819

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QGSAADI + AM+   ++    K   ++L+Q+HDELVFEV    +      I H ME 
Sbjct: 820 PMQGSAADIIKLAMVQFWQTYGAQK-ECRLLMQVHDELVFEVATAALDIWQPRITHIMEH 878

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A LP   L VPL V+  VS +W
Sbjct: 879 A-LP---LSVPLIVDCGVSKDW 896


>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
 gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
          Length = 940

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 343/995 (34%), Positives = 529/995 (53%), Gaps = 78/995 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M   + L  +DGSSF+YRAFYA         G+P  A+    NML KLL    K+     
Sbjct: 1   MNANSCLIFIDGSSFLYRAFYAAKRGFTTKSGVPTGAVLIITNMLKKLL----KQYAGYK 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    +FR+++YP+YK+NRP +PE L  Q+  V    +A G+P I +   EADD+
Sbjct: 57  IAVVFDAKGKSFRSDLYPEYKSNRPPMPEDLRIQVDYVHRIVKAMGLPLIIVPKVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           + +Y   A+  GF+  I + DKDL QLV+    L DT+ +   D + V++K+G+PP  ++
Sbjct: 117 LGSYAKKAQSLGFSSLICTGDKDLAQLVNDKVTLIDTMNDHVYDEKGVMEKYGVPPCHII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENIL 234
              AL GDS DNIPG+PG+G  TA  L+   G +E+I      I     R        + 
Sbjct: 177 DFLALKGDSSDNIPGMPGVGDVTAKTLINSLGGIEDIFSKREEIASLSFRGAKTFAAKLE 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E+ E  RLS  L  ++TDV + I +E L +   N   L++  K LEF KL    A     
Sbjct: 237 EHIEDVRLSYTLATIKTDVDLPIAIEDLTVPKKNKEDLLNIYKELEFAKLYAEEAQ---- 292

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKT----SQFSSLSDQTSKINSEQTPQKL 350
                EP+  +  T             +D+ + T    +Q  S +D ++ +         
Sbjct: 293 -----EPLDFEEKT-------------KDSAVPTADVKAQVQSQTDFSAGV--------- 325

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                  LS +      +  I     +   ++K++  G  +F   T ++       + ++
Sbjct: 326 -------LSDHKSRGSKFNLIDTIAKLDALIEKIKNKGLFAFDTETTSLHPEDCTLVGVS 378

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S +++K+     +   ++   V  ++D         ++ + L   F +    KIGHN+K
Sbjct: 379 FS-VEEKEAFYLPLAHAYLGAPVQLAKD---------DVFAKLAPVFADPKIKKIGHNVK 428

Query: 471 YDKLVLHRYGIS-MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525
           +D LVL+  G+S ++G + D MLM+++LDS +S   + ++A+K+LSY      ++  S  
Sbjct: 429 FDLLVLYFAGLSAVKGVYADTMLMAHLLDSVQSCA-LDNLAEKYLSYKTIKYSDVAGSGS 487

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQME 584
            S+  D +       ++ E+S V L+L+ +L PK+  E K   +   L+ P + V+  ME
Sbjct: 488 KSVTFDNVPVDIACAYSGEDSEVALRLFNVLLPKIKDEGKANDILFNLEMPCLSVLFDME 547

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G  +  D L + +  +   L +++++IY  +G++FN++SPKQLG++LF  L  P   K
Sbjct: 548 RVGALVSADELYRQTEVLKSELQAVQKDIYAAAGQEFNIASPKQLGNVLFESLAIPYPKK 607

Query: 645 TKT----GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
            K      +  +TA+D+         I   +L +R +SK+  TY + LP  I+KRT R+H
Sbjct: 608 VKVDKNGNKQYSTAEDVLTEIAPMYDIANLVLRFRSVSKLIGTYTEKLPLLISKRTGRIH 667

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T ++ A T TGRL+S +PNLQNIP +T  G+ IR+AFI+P    L+SADYSQIELR++AH
Sbjct: 668 TSFNQAGTTTGRLSSSDPNLQNIPARTHEGKLIRKAFIAPQGYTLVSADYSQIELRLIAH 727

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           IAK   L + F+   DIH+  AAE+ G +I +V+ + R  AK  NF ++YG+    L+ Q
Sbjct: 728 IAKDPNLIKAFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLMYGMGAHGLSAQ 787

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             +    A  YI  YF R+P I +Y++  K F  ++GYVETI GRRI +  INS      
Sbjct: 788 TGLSFKAAKAYIDCYFTRYPKIRDYMDSIKKFAHEHGYVETILGRRIDFPGINSTNRIAV 847

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITT 939
              ERAAINAP+QGSAADI + AMI++ K +      T +M+LQ+HDELVFEV  E +  
Sbjct: 848 TGAERAAINAPMQGSAADIIKIAMIAIEKWITSLPADTVRMILQVHDELVFEVKNEFLDE 907

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           A+  I   ME A    + L VPL   I +  NW +
Sbjct: 908 ATAKIKELMENA----VTLDVPLLAGIGIGQNWGD 938


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 325/979 (33%), Positives = 520/979 (53%), Gaps = 98/979 (10%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D    IYRA++A    P+  R  DG   +AI GF  ML++ +    KE    +  V
Sbjct: 4   LFLIDAYGLIYRAYFALIRAPM--RTKDGRNTSAIYGFFRMLFRFV----KEYDPVYCGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + D    TFR + +  YKA R K PE L PQ+P++    +A G   + + GFEADD++ T
Sbjct: 58  VLDSLTPTFREKTFEAYKATRQKTPEDLHPQIPVIEEILEALGFATVRMNGFEADDVMGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI--DIEHVIKKWGIPPEKMVC 181
              +A+ EG    ++S DKDL QLV+    +    K++ +  D E V +KWG+  +++V 
Sbjct: 118 LAAMAQAEGRPCFVVSGDKDLAQLVTKGVKIVRMDKDDFVVLDEEGVKEKWGVRADQIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ DNIPG+ GIG KTA  LL EYG+LE +  +   +    RR  + E  E A 
Sbjct: 178 FLALVGDASDNIPGVEGIGEKTAQRLLAEYGSLEGVYAHLDELSPSLRR-KLEEGRERAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LSR L  +RTD+ +++ +  L   +    R      A +   L   V  +        E 
Sbjct: 237 LSRDLATIRTDLDLSLTIGDLRRREPEVQRARELFLAYDIRSLAQEVGGSPSVG----EK 292

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L++      G++ E   DR         +SLS                          
Sbjct: 293 PTLEVEGPSRAGVSYEVVTDR---------ASLS-------------------------- 317

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                            +WV++    G+ +    TD +D    + + ++ +  + +    
Sbjct: 318 -----------------RWVEEALERGAVAVDTETDGLDPLTCRLVGVSFAVDEGR---- 356

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 ++ L+    +       + +E+LS L     +   +K+G N+K+D  VL R+G+
Sbjct: 357 ----ACYVPLAAPDVRPLPAD--VVREVLSPL---LVSTEVVKVGQNLKFDYHVLRRWGV 407

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS--SIPIDKISD 535
              G F D M+ +++L+S    +++  +A+K+L +     K++++   S  ++P+     
Sbjct: 408 RPEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTIHYKDVVEKGASFETVPV----- 462

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++   +A E++++ L+L  +L+ +L  E L  V+  ++ P++ ++++ME  GI +D + L
Sbjct: 463 AEAGVYAAEDADIALRLSRVLKERLEAEGLGRVFYEMEMPLLSILARMEEWGIGLDGEAL 522

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
                E+ + + ++E+ I++L G +FN+ S KQL ++LF +   P   KTKTG + T   
Sbjct: 523 SAFGRELEERISTIEKEIFELVGHEFNVGSTKQLQEVLFVERGLPPVKKTKTG-FSTDTS 581

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+   +LE+R L+K+K+TY D LP  +N  T R+HT++S   T TGRL+S
Sbjct: 582 VLEELAARD-PVAAKVLEYRSLTKLKNTYVDVLPGLVNPGTGRLHTWFSQVGTATGRLSS 640

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPIKT+ G++IR AF+       +SADYSQIEL ILAH+++   L + F    
Sbjct: 641 KDPNLQNIPIKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSEDPALCRAFREGE 700

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR   + +FGV  E V+P+ RR AKTINF +IYG+S FRL+ +L IPR EA  +I  Y
Sbjct: 701 DVHRATGSLLFGVPPEAVTPEQRRIAKTINFGVIYGMSAFRLSRELGIPRKEAERFIDAY 760

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  + G+  +IE+T     + GYV T+FGR+     I S   + +   ER A+N PIQGS
Sbjct: 761 FTTYAGVRAFIERTIAEAEEKGYVTTLFGRKRPLPYITSRNKTQKTGAERIAVNTPIQGS 820

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
            ADI + AMI +   +    LA++M+LQ+HDEL+FEVP EE+    +++   ME      
Sbjct: 821 GADIIKLAMIDLDAQMRRMGLASRMILQVHDELIFEVPPEELEVMKRLVRERMEGV---- 876

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L VPL+V + V  NW E
Sbjct: 877 VRLSVPLRVEMGVGRNWGE 895


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 338/983 (34%), Positives = 542/983 (55%), Gaps = 79/983 (8%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYR++YA   +P ++ K  GL  +AI GF N L ++L    KE+  +H 
Sbjct: 2   DKLFLLDAYALIYRSYYAFIRSPRINSK--GLNTSAIMGFVNTLNEVLT---KEN-PTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR++ +P+YKA R + PE +   +P+++   +AF IP ++++GFEADD+I
Sbjct: 56  GVAFDL-GKTFRHDAFPEYKAQREETPEDIKLSVPIIKDILRAFNIPILQVEGFEADDVI 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGI-PPE 177
            T    A   G    +++ DKD  QL+     +Y        ++   + V  K+GI  P 
Sbjct: 115 GTLAKKAGATGVDTYMLTPDKDYGQLIGEHVFMYRPRHGGGYEVLGEKEVEAKYGITSPL 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GDS DN PG PG+G KTAA L+ EYG++E +L +   +K  K +E +    
Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTAAKLISEYGSIEELLAHTDSLK-GKMKEKVETAV 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++S+ L  +RTDVPI +  E L     +  +L      LEF  L +++         
Sbjct: 234 EDIKMSKFLATIRTDVPIDLNWEELKRVAPDEHKLRELFAELEFKSLADKI--------- 284

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   +N +ENK     +++D        +F+ +  +  K ++ +T + +  E    
Sbjct: 285 --------LNKSENKKKEPNSQLDL-----FHEFTPVGPEEPKYSNYETVKTVQHE---- 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I N  DI        T    S    T + +   ++ + ++ +  ++K
Sbjct: 328 ----------YKLIENQTDIINICDFFRTKSILSLDTETTSTNPIDAELVGLSFAVEEKK 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ +  +  +         ++I++  K  +EN   LK+G N+KYD  VLH
Sbjct: 378 --------AFYVPIPSNRQE--------AQKIVNIFKPIYENPDILKVGQNLKYDLEVLH 421

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDK 532
            YG++++G   D ML  YV+      H++  +A+  L+Y      E++  R K+   + +
Sbjct: 422 NYGVTLKGKMFDTMLAHYVIQP-ELRHNMDYMAETLLNYRTIHIDELIGPRGKNQKSMRE 480

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   +V E+A E++++ LQL  +L  KL   +   ++  ++ P++ V++++E+ G+ ID 
Sbjct: 481 LDPKEVYEYAAEDADITLQLKNVLETKLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDT 540

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651
           D L++ SA ++K +   E  IY L+GE+FN+SSPKQ+GDILF K+K      KTKTGQ+ 
Sbjct: 541 DSLRETSAILTKRMQDYEHEIYQLAGEEFNISSPKQVGDILFGKMKIVEKPKKTKTGQFV 600

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + L+Q+    +PI+  ILE+R L K+  TY D+LP  IN RT  +HT ++ A T TG
Sbjct: 601 TSEEVLQQLE-NKSPIVAKILEYRGLKKLLGTYVDALPKLINPRTGHIHTSFNQAITATG 659

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ + G++IR+ FI  P     SADYSQIELR++AH++    + + F
Sbjct: 660 RLSSSDPNLQNIPVRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIEAF 719

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH   AA+I+   IE+V+   R  AK  NF IIYGI+ + LA +L I   EA + 
Sbjct: 720 MHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIYGITTYGLAQRLDIDNREAKEL 779

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF  FP ++EY+E+ K   R  GY ET+F RR +  +INS  +++R   ER AINAP
Sbjct: 780 IEGYFETFPQVYEYMERAKADARAKGYAETLFHRRRYLPDINSHNATVRGYAERNAINAP 839

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +    +   + +K++LQ+HDEL F V  +E     +I++  M+ A
Sbjct: 840 IQGSAADIIKVAMIRISDRFKRENIHSKLILQVHDELNFSVYPDEKEKVERIVLEEMQNA 899

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 LRVPL  +    +NW E
Sbjct: 900 ----YPLRVPLVADAGWGSNWLE 918


>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
 gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
          Length = 903

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 327/983 (33%), Positives = 517/983 (52%), Gaps = 102/983 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L DG++ ++RA++  P L+ +  G  V A  GF ++L K+L + + +     +A+ FD
Sbjct: 6   IVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPDC----YAISFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ DYKA RP +P+ L+ QL  VR    AF +P  E  GFEADD++ T   
Sbjct: 62  KKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLAT 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDIEHVIKKW 172
            A  EG  V I S D D MQLVSP               T LYD           V  K+
Sbjct: 122 RAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAA--------VRAKY 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ PE +   +AL GD  DNIPG+PGIG KTA  L++EYG +E+I  N  +I     ++ 
Sbjct: 174 GLGPEHVADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKK 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + + AE AR S+ L  +  D+P+   ++    E  N  +++   + LEF +LINR+    
Sbjct: 234 LADNAEVARQSKILTTIVCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLINRLPGG- 292

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                            EN G  +           T  F+             TPQK+  
Sbjct: 293 -----------------ENPGGGM-----------TDMFN-------------TPQKV-- 309

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                        ++   + N +++   V++       +  +   + +A  ++  A+AIS
Sbjct: 310 -------------ETRYIVANGQNLDSIVKRFTETKELALAVSGTSEEAIDARLTALAIS 356

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             +         E  FI  S      ++       E    L     N++  K  HN KY 
Sbjct: 357 PAEG--------EAYFI--SAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTAHNAKYL 406

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
             +L   G  ++G + D ML +++L  G  +  I  +  +       ++      +    
Sbjct: 407 MNLLASAGQEIQGLDFDTMLSAHLL--GEKNLGIKDLVFEHFGVEIADVENILTQNGKKK 464

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             S S++ E A   ++   +L  L   +L   KL+ ++  ++ P++ ++  ME +GI +D
Sbjct: 465 SFSASELSEAAQLVADYTFRLKGLFAAQLAETKLIDLFVNVEMPLVPILLGMERSGIMLD 524

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            DLLK ++ ++   +  LEE IY  +G  FN+ SP+QLG ILF +LK P   KTKTG + 
Sbjct: 525 TDLLKGMAEKVGGQIFKLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YS 583

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A+ L+++  G++ I+  ILE+R L K+KSTY D+LP  +N  T+R+HT ++   T TG
Sbjct: 584 TGAEVLDELK-GEHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATG 642

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIP++ ++G++IRRAFI+P    +++ DYSQI+LR+LAH++    L + F
Sbjct: 643 RLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAF 702

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AA +  +   +V+ + RR AKT+NF +IYG+S + L     +  +EA  +
Sbjct: 703 LKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKF 762

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           IK YF ++P +  Y  + K+  R NGYVET+ GRR +  EINSP   +R   ER AIN P
Sbjct: 763 IKAYFEKYPRVAIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMP 822

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG++ADI + AM+ + + L++ KL +++LLQ+HDEL+FEVP+ E+   S +++ +M  A
Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDELIFEVPDAELKRMSALLMETMSGA 882

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               +   +PLKV +K   NW +
Sbjct: 883 ----VTFEIPLKVELKSGANWGD 901


>gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630]
 gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42]
 gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile]
          Length = 882

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 336/980 (34%), Positives = 531/980 (54%), Gaps = 110/980 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L ++DG+S I RAFYA P ++ K +GL  NAI GF  ML+K++   +     +H +V
Sbjct: 2   EKKLIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+  Y +YKA R  +P+ L  QL  ++     F I  +EI G+EADDII T
Sbjct: 57  AFDRKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFRINRLEIDGYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  AE+ G+ V I++ DKD +QL S  T    T K     E+ +   VI+K+ + P + 
Sbjct: 117 VSKKAEENGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPTQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PGIG KT   L++E+ ++EN++ N  ++K   +++ I E  E 
Sbjct: 177 IDLKGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLIENTDKLKGSVKKK-IEENKEI 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  S++L  +  DVPI + L+ +I  D +   L+   +   F                  
Sbjct: 236 AIQSKRLATIIRDVPIEVDLDSMIFGDYDKDELLDKFRYFGF------------------ 277

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                       TS  S L D     ++E   +K+         
Sbjct: 278 ----------------------------TSLLSRLVDLVDSDDTEHVEEKI--------- 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                     +I+  KDI++++ ++   G    K +    +      I I IS   +K  
Sbjct: 301 ----------EILKLKDIEKFIDEVNKKGQVILKTVRGQGNILEKNIIYIFISVDGEK-- 348

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++D            N ++K     L   F N    K G+N+K D + L  Y
Sbjct: 349 ------IYYVD-----------SNEVSK-----LDSIFSNNEIKKYGYNLKDDYISLKPY 386

Query: 480 GISMRG-FEDIMLMSYVLDSGRS-SHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
            I++   + DI +  Y++DS  S S+D ++IA K+LS    +++E+L     S   + + 
Sbjct: 387 NINLENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLE 446

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + E+  +    + +   ++   L+   +  ++  ++ P+++V+  ME  GI++D+ +
Sbjct: 447 FEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSI 506

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S E  + + +LE+ IY+LSGE FN++SPKQLG ILF KL+ P   KTKTG + T A
Sbjct: 507 LDELSVEFKEIIATLEKEIYELSGEPFNINSPKQLGVILFEKLELPIIKKTKTG-YSTNA 565

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    +PII  I E+RQ+ K+ STY + L N IN  + R+H+ ++   T TGR++
Sbjct: 566 DVLEKLR-DKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQTITTTGRIS 624

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPIK ++G+KIR+ FI+    KL+ ADYSQ+ELR+LAH+++   + + F++ 
Sbjct: 625 STEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHH 684

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+++F V +E V+ ++R  AK +NF IIYG S F LA  L IP  +A +YI+ 
Sbjct: 685 EDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIES 744

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF ++  I E+++ T     ++GY  TI  RR +  EI S     RN  +R A+NAPIQG
Sbjct: 745 YFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQG 804

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI+VHK LE++ L +K++LQ+HDEL+ E  ++EI    +I+   ME A   
Sbjct: 805 SAADIIKIAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENA--- 861

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            +N+ V L V++ V ++W E
Sbjct: 862 -VNMDVHLDVDLNVGSSWYE 880


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
 gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
          Length = 941

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 349/997 (35%), Positives = 545/997 (54%), Gaps = 85/997 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  ++ LFL+D  + IYRA+YA   +P ++ K  G   +AI GF N L ++L    K+  
Sbjct: 1   MNSDDKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PSHIGVAFDPAGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + IE V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSENVFMYRPKHTGGFEIMGIEQVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
              ++++ +  L GD+ DNIPG PG+G KTA  L+ E+G++E                N+
Sbjct: 175 QSTQQVIDMLGLMGDASDNIPGCPGVGEKTAQKLISEFGSIE----------------NL 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           LE+ +  + +     L+T V              N   +I+F K L   K+   V    D
Sbjct: 219 LEHTDQLKGA-----LKTKVE-------------NNREMITFSKFLATIKI--DVPIKLD 258

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDR--DTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
             A     V  + N  E + I  E E     D  +K S   S S     + S   P  LF
Sbjct: 259 MKAL----VREEPNEEELRKIFEEMEFRTLIDRVLKKSNAPSPSSAAPDLFS---PGPLF 311

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI-ITDTMDAFHS---KPI 407
                  +  P+  + + +    +   +    L  + +++F   + DT +       K +
Sbjct: 312 AP-----NNGPVQGNLFEEFAGDRLDDEKKSNLARLETSNFDYQLLDTEEKRSEIIKKLL 366

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE------ILSYLKKFFENEH 461
              I ++D +  ++  +E   + +S   +++      +  E      I++  +  +ENE+
Sbjct: 367 TTKILSIDTETTSAEPMEAELVGMSFSDTENQAYYVPVPPEREEALKIVNEFRPLYENEN 426

Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
            +K+G NIKYD LVL  YG+ ++G   D ML  YVL      H++  +A+ +L Y     
Sbjct: 427 SMKVGQNIKYDILVLQNYGVEVKGELFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHI 485

Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            E++  + K+   +  +   +V ++A E++++ L+L  +L  +L  + + H++  ++ P+
Sbjct: 486 DELIGPKGKNQKNMRDLPPEEVYKYACEDADITLKLKNVLEEELKKQGVEHLFYEIEMPL 545

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V++ ME  G++ID + LKQ S   +  L  +E+ IY+L+GE FN++SPKQ+G+ILF K
Sbjct: 546 VRVLANMESNGVRIDTETLKQTSEHFTVRLQEIEKEIYELAGETFNIASPKQVGEILFDK 605

Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           LK    AK TKTGQ+ T+ + LE +    + +I  ILE+R L K+  TY D+LP  IN R
Sbjct: 606 LKIIDKAKKTKTGQYVTSEEVLESLR-NKHEVIGKILEYRGLKKLLGTYVDALPLLINPR 664

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T R+HT ++ A T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIEL
Sbjct: 665 TGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDDCEFFSADYSQIEL 724

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+++   +   F +  DIH   AA+I+ ++I+ V+P MRR AKT NF IIYGIS F
Sbjct: 725 RIMAHLSEDKNMIDAFLSGYDIHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYGISIF 784

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA ++ + R EA + I  YF  +P + EY++K+    R+ GYVETIF R+    +INS 
Sbjct: 785 GLAERMNVDRKEAKELIDGYFETYPQVREYMDKSIQVAREQGYVETIFHRKRFLPDINSR 844

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +++R   ER AINAPIQGSAADI + AM  +++  + +KL  KM+LQ+HDEL F VPE 
Sbjct: 845 NATVRGYAERNAINAPIQGSAADIIKVAMARIYERFQSYKLKAKMILQVHDELNFSVPEA 904

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           E     QI++  ME+A      + VPL+ +     NW
Sbjct: 905 EKEFVQQIVIEEMERAY----RMHVPLRADCGWGKNW 937


>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
 gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
          Length = 930

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 347/987 (35%), Positives = 539/987 (54%), Gaps = 72/987 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L    K+  
Sbjct: 1   MDSDNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PGIG KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 KSPAQVIDMLGLMGDSSDNIPGCPGIGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++ DVPI + ++ L+ E  +   L S  + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREQPDEEALRSIFEELEFRTLIDRVLKKET 293

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                + P                   ++   I+   F++ +      N     +K  LE
Sbjct: 294 SAPLPLFP-------------------EKSEGIQGDLFANFTG-----NEPSEAKKSNLE 329

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L+ L         Y  I   +  ++ +QKL T    S    T   +   ++ + ++ S 
Sbjct: 330 TLESLCC------DYQLIDTEEKRKEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSI 383

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         E  ++   V  +Q+ T K      I++  +  FENE  LK+G NIKYD 
Sbjct: 384 AEN--------EAFYV--PVPANQEETLK------IVNEFRPVFENESSLKVGQNIKYDM 427

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           +VL  YG+ ++G   D M+  YVL      H +  +A+ +L Y      E++  + K+  
Sbjct: 428 IVLQNYGVEVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 486

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  ++   V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+
Sbjct: 487 NMRDLAPKDVYRYACEDADVTLKLKNVLEKELKENGTERLFYDIEMPLVPVLVNIERNGV 546

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D + LKQ SA  ++ +  +E+ IYDL+GE FN++SPKQ+G++LF KLK    AK TKT
Sbjct: 547 LLDTEALKQSSAHFTEQMERIEKEIYDLAGETFNIASPKQVGEVLFDKLKIVEKAKKTKT 606

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   
Sbjct: 607 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV 665

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +
Sbjct: 666 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 725

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F ++ DIH   AA+I+ + +++V   MRR AKT NF IIYGIS F LA ++ + R E
Sbjct: 726 IDAFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANFGIIYGISVFGLAERMNVERKE 785

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF  +PG+  Y++++    ++ GYVETIF R+    +INS  + +R   ER A
Sbjct: 786 AKELIDGYFETYPGVKAYMDQSIRVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 845

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI + AM  +++      + TKM+LQ+HDEL F VP +E     +I++  
Sbjct: 846 INAPIQGSAADIIKVAMARIYQRFRAEGIKTKMILQVHDELNFSVPIDEKERVEEIVIEE 905

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           MEKA      + VPLK +     NW E
Sbjct: 906 MEKA----YRMHVPLKADCGWGKNWLE 928


>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
 gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
          Length = 903

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 328/983 (33%), Positives = 517/983 (52%), Gaps = 102/983 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L DG++ ++RA++  P L+ +  G  V A  GF ++L K+L + + +     +A+ FD
Sbjct: 6   IVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPDC----YAISFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ DYKA RP +P+ L+ QL  VR    AF +P  E  GFEADD++ T   
Sbjct: 62  KKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLAT 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDIEHVIKKW 172
            A  EG  V I S D D MQLVSP               T LYD           V  K+
Sbjct: 122 RAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAA--------VRAKY 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ PE +   +AL GD  DNIPG+PGIG KTA  L++EYG +E+I  N  +I     ++ 
Sbjct: 174 GLGPEHVADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKK 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + + AE AR S+ L  +  D+P+   ++    E  N  +++   + LEF +LI+R+    
Sbjct: 234 LADNAEVARQSKILTTIVCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLIHRLPGG- 292

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                            EN G  +           T  F+             TPQK+  
Sbjct: 293 -----------------ENPGGGM-----------TDMFN-------------TPQKV-- 309

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                        ++   I N +++   V++L      +  +   + +A  ++  A+AIS
Sbjct: 310 -------------ETRYIIANGQNLDSIVKRLTETKELALAVSGTSEEAIDARLTALAIS 356

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             +         E  FI  S      ++G      E    L     N++  K  HN KY 
Sbjct: 357 PAEG--------EAYFI--SAEFIGSASGGQMFVSEGHPGLIALLTNKNITKTAHNAKYL 406

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
             +L   G  ++G + D ML +++L  G  +  I  +  +       ++      +    
Sbjct: 407 MNLLASAGQEIQGLDFDTMLSAHLL--GEKNLGIKDLVFEHFGVEIADVENILTQNGKKK 464

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             S S++ E A   ++   +L  L   +L    L+ ++  ++ P++ ++  ME +GI +D
Sbjct: 465 SFSASELSEAAQLVADYTFRLKGLFAAQLAEINLIDLFVNVEMPLVPILLGMERSGIMLD 524

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            DLLK ++ ++   +  LEE IY  +G  FN+ SP+QLG ILF +LK P   KTKTG + 
Sbjct: 525 TDLLKGMAEKVGGQIFKLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YS 583

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A+ L+++  G++ I+  ILE+R L K+KSTY D+LP  +N  T+R+HT ++   T TG
Sbjct: 584 TGAEVLDELK-GEHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATG 642

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIP++ ++G++IRRAFI+P    +++ DYSQI+LR+LAH++    L + F
Sbjct: 643 RLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAF 702

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AA +  +   +V+ + RR AKT+NF +IYG+S + L     +  +EA  +
Sbjct: 703 LKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKF 762

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           IK YF ++P +  Y  + K+  R NGYVET+ GRR +  EINSP   +R   ER AIN P
Sbjct: 763 IKAYFEKYPRVAIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMP 822

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG++ADI + AM+ + + L++ KL +++LLQ+HDEL+FEVP+ E    S +++ +M  A
Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAEFKRMSALLMETMSGA 882

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               +   +PLKV +K   NW +
Sbjct: 883 ----VTFEIPLKVELKSGANWGD 901


>gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
          Length = 921

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 340/981 (34%), Positives = 530/981 (54%), Gaps = 78/981 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  G   +AI GF N L +++Q  +     SH  V
Sbjct: 4   LFLLDAYALIYRSYYAFIKNPRINSK--GFNTSAILGFVNTLHEVIQKEQ----PSHLGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + DYKA R K PE +   +P+++   +A  IP +E++G+EADD+I T
Sbjct: 58  AFDPSGPTFRDEAFADYKAQREKTPEDIKLSVPIIKQILEAMNIPILEVKGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPEKM 179
               A        +++ DKD  QLV     +Y        E + +E + +K+ I  P ++
Sbjct: 118 LATQASAFDMETYMLTPDKDYGQLVKENVFIYRPRHGGGYEILGVEQIKEKYQIESPSQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + + AL GDS DN PG PG+G KTA  L+ ++ ++ N+L N +++K  K +E +    + 
Sbjct: 178 IDILALMGDSADNFPGCPGVGEKTAIKLINDFKSINNLLENTNQLK-GKLKEKVEGAVDD 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S  L  ++TDVPI + L  L L   N  +L +    LEF  L N+            
Sbjct: 237 IKMSNFLATIKTDVPIELNLTDLQLTPPNEEKLRALFDELEFRTLANKF----------- 285

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                    TEN    I+T+         SQ +   + TS  N    PQ    E  + L 
Sbjct: 286 ------FKKTEN----IQTK-------DNSQLNLFEEFTS--NDAVEPQ---FENYKTLF 323

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               N   Y  I   +DI      L T    S    T +++A  ++ + ++ S   Q   
Sbjct: 324 DTKYN---YKLIEKEEDINNLCDLLLTKRIVSLDTETTSLNALEAELVGLSFSVSPQ--- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                E  ++ +     +         ++I++  +  +ENE   K+G NIKYD  VL  Y
Sbjct: 378 -----EAFYVPIPNEQQK--------AQKIVNAFQPLYENEEIEKVGQNIKYDIEVLRNY 424

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRKSSIPIDKIS 534
           GI+M+G   D M+  Y+L      H++  +A+ +L Y      + I    K  + +  ++
Sbjct: 425 GITMKGPLFDTMIAHYLLQP-ELRHNMDDMAETYLRYKTIHIDQLIGAKGKDQLNMRSLA 483

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q+ ++A E++++ LQL  +  PKL    L  +++ ++ P+I V+++ME  G+++D   
Sbjct: 484 PEQIVDYACEDADITLQLKNIFEPKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQA 543

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTT 653
           L +VS   ++ L   E+ IY+L+GE FN+SSPKQ+G ILF KLK      KTKTGQ+ T+
Sbjct: 544 LSEVSKTFNEQLSLYEQKIYELAGETFNISSPKQVGTILFEKLKVAEKPKKTKTGQYVTS 603

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            ++L+++    +PII  IL++R L K+ STY D+LP  +N +T  +HT ++ A+T TGRL
Sbjct: 604 EEELQKL-INKHPIIDEILKYRGLKKLLSTYVDALPKLVNPKTGNIHTSFNQATTATGRL 662

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++ + G++IR+ FI        SADYSQIELRI+AH++    + + F  
Sbjct: 663 SSSDPNLQNIPVRGEDGKEIRKCFIPNEGCLFFSADYSQIELRIMAHLSGDENMIEAFIE 722

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+   I++V+   R  AK  NF IIYGI+ F LA +L I R+EA   I+
Sbjct: 723 GHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIYGITVFGLAERLNIERNEAKQLIE 782

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +  Y+E+ K   +QNGYVET   RR +  +INS  +++R   ER AINAPIQ
Sbjct: 783 GYFSTFPQVQAYMEQCKETAKQNGYVETFMHRRRYLADINSQNATVRGYAERNAINAPIQ 842

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ +++   +  + +KM+LQ+HDEL F V   E     +I++  M+ A  
Sbjct: 843 GSAADIIKLAMVRIYERFNNEGIKSKMILQVHDELNFSVLPNEKEQVEKIVLEEMQNA-- 900

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L+VPL  +     NW E
Sbjct: 901 --FALKVPLIADAGWGANWLE 919


>gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7]
 gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
          Length = 860

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 329/931 (35%), Positives = 498/931 (53%), Gaps = 92/931 (9%)

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           A + A +FD    TFR++IYP YK NRP +PE L  Q   +  A  A G P + + G EA
Sbjct: 6   ADYAACVFDARGKTFRDDIYPLYKGNRPSMPEELAAQTEPIHRAVAALGWPVLAVPGVEA 65

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDII T    A +EG    + + DKDL QLV+    L +T+  E+ DI+ VIKK+G+ P+
Sbjct: 66  DDIIGTLARRAAQEGVHTVVSTGDKDLAQLVNEHVELVNTMSGERQDIDGVIKKFGVTPD 125

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V    LTGD++DNIPG+  +G KTAA  L +Y  ++ ++ NA  +K      N+    
Sbjct: 126 QIVDFLMLTGDTVDNIPGVEKVGPKTAAKWLAQYKTIDALVENADSVKGVAGN-NLRAAI 184

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
               ++R+LV ++TD              C+ P L S L AL                  
Sbjct: 185 PNFDMTRQLVTIKTD--------------CDIPELASGLSAL------------------ 212

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIK-------TSQFSSLSDQTSKINSEQTPQKL 350
                               T +DRD  +         S    L+    ++  + + Q  
Sbjct: 213 ------------------TPTPVDRDVLVNLYNEYGFRSWLRELTGDADRVPEQDSRQP- 253

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                Q++ Q P   D Y  I +  D  +W++ + +    +    T ++D   ++ + ++
Sbjct: 254 -----QEIPQAPEQLD-YQTINDWADFDRWLKIIASADLVALDTETTSLDPMQARLVGLS 307

Query: 411 ISTLDQKDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
           +S           VE     +I ++ H   D        +E+L  L+ + E+    K+ H
Sbjct: 308 MS-----------VEAGVACYIPVA-HRGPDHA-PQLPKQEVLDRLRPWLEDSKAHKLLH 354

Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS 523
           N KYD  VL   G+++ G  ED ML +YVL+S +   ++  +A++WL     T +++   
Sbjct: 355 NAKYDTHVLMNEGVALAGVAEDTMLQAYVLESHKRV-NMQELAERWLGRIGTTYEDLCGK 413

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
               I  D+I   +   +A E+++  LQL  +LRPK++ +  L    +L+      ++ +
Sbjct: 414 GAKQIGFDEIDVDKASHYACEDADFTLQLHQVLRPKVLADPGLENIYQLEVQASATLAII 473

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+ ID  LL   S E+ + LL  E   Y+L+G+ FNL+SPKQLG+ILF +++ P   
Sbjct: 474 ERNGVAIDGKLLAAQSHELGQKLLEFEAKAYELAGQPFNLNSPKQLGEILFQRMQLPIVR 533

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT +G   +T +D+      D P+   +LE+R L+K+KSTY D LP  IN RT RVHT Y
Sbjct: 534 KTPSGA-PSTDEDVLTKLAHDYPLPALLLEYRGLAKLKSTYTDKLPKMINPRTGRVHTRY 592

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           + A+ +TGRLAS +PNLQNIP++T  G+++R AF++    +++SADYSQIELR++AH++ 
Sbjct: 593 AQAAVITGRLASSDPNLQNIPVRTPEGRRVRAAFVAS-GGQIVSADYSQIELRVMAHVSD 651

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L Q FE   DIH+  AAE+FG    +VS + RR AK INF +IYG+  F LA+ L I
Sbjct: 652 DENLRQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAINFGLIYGMGEFGLASNLGI 711

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R  A  YI RYF R+PG+  Y+E+TK    + GYVET+FGRR+   ++   K   R   
Sbjct: 712 TRDAARAYIDRYFARYPGVAAYMEQTKRMANELGYVETVFGRRLWLPDLRGAKGPRRAAA 771

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAAINAP+QG+AAD+ + AM++V   LE   L T M++Q+HDELVFEVP +E+     I
Sbjct: 772 ERAAINAPMQGTAADLIKMAMVAVQDWLEAEGLKTLMVMQVHDELVFEVPADEV----DI 827

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   +         L VPL   + V  NW++
Sbjct: 828 IKKHLPALMCNVAQLSVPLVAEVGVGPNWEQ 858


>gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
 gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
          Length = 918

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 334/977 (34%), Positives = 548/977 (56%), Gaps = 74/977 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+DG++ +YRA +A    PL++ K  G+  +AI G  N    +L+N++    A++ A+
Sbjct: 5   LYLIDGTALLYRAHFAFIKNPLINSK--GIHTSAIFGVINSFLHILENTQ----AAYVAI 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+ +Y  YKA RP +P+ L  Q+  V+   +  G+  I + G+EADDI+ T
Sbjct: 59  SFDRKAPTFRHNLYEAYKAQRPPMPDELTAQIEPVKRFFELIGLKEIGLDGYEADDILGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              +  K+ F +  +++DKD  QLV   + + D +K+  +D + V  K+G+ PE+ +   
Sbjct: 119 LAKLY-KDQFQIVFLTSDKDYCQLVDERSVMLDPMKDIVLDRDAVYAKYGVYPEQFIDYL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD  DNIPG+  IG KTAA+LL EY  L+NI  N  ++K  + +E + E  E A LS
Sbjct: 178 ALVGDPSDNIPGVSSIGPKTAAMLLSEYQTLDNIYANLDKLK-PRLQEVLRENKENAYLS 236

Query: 244 RKLVMLRTDVPITIP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           ++L  + TDVPI  P LEHL     +  + I  L+  E   +  ++   Y          
Sbjct: 237 KQLAKIDTDVPIPKPDLEHLTFWAKDLRKAIPLLEEYEINSIKRKIELKYP--------- 287

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
             + NTT+      +TE   D                    ++ PQ+   E  +K+    
Sbjct: 288 --ETNTTKQ-----QTEYQDDI----------------FKEKEKPQEETAETEEKMPFSA 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +       +VNT +    +++L+     S    TD+ +   +  + I+   +D+K     
Sbjct: 325 V-------LVNTLNFVTLLKELKEAKQISLDTETDSPEPMRANLVGISF-CMDEK----- 371

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
             +  ++ L           N    E+L +L+   + +  L +GHN+K+D +VL R G+ 
Sbjct: 372 --KAYYLPLG-----HQLAVNLPLPEVLRHLEDALKGK--LLLGHNLKFDLIVLARNGLE 422

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           +     D ML +Y+LD G  ++ + + A   L+Y      +++   K+    D +   + 
Sbjct: 423 LDNPLFDTMLAAYILDPGTLNYSLETCALNELNYKMIPISDLIGKGKNQSTFDLVEPEKA 482

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             ++ E++  + +L+ + R K+    + ++++ ++ P+I V+ QME+ G+ ID  +L ++
Sbjct: 483 CIYSAEDAWAVYKLYPVYRRKVDFSVMANLFDTIELPLIKVLQQMEMNGVAIDCSVLSEI 542

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S +I+  L +L + IY  +G +FN++S +QL  +LF + K P G KTKTG + T    LE
Sbjct: 543 SHQINLELKTLTDKIYAFAGYEFNINSTQQLAKLLFEEKKLPYGRKTKTG-YSTDNSVLE 601

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D  I   I+++RQLSK++STY  +LP  IN +T R+H+ ++   T TGRL+S  P
Sbjct: 602 ELAI-DYEIAGIIIQYRQLSKLQSTYVSALPKMINPQTGRIHSSFNQTVTSTGRLSSSNP 660

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++T++G++IR+AF +   + LI  ADYSQIELR+LA +++   L + F+  LDI
Sbjct: 661 NLQNIPVRTEIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFKQDLDI 720

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H+ +AA+IF V+IEKV+P  RR AKTINF I+YG+   +L+ +L I  +EA D I  Y+ 
Sbjct: 721 HKRMAAKIFNVDIEKVTPDQRRAAKTINFGILYGMGQRKLSRELGISLNEAKDIIDGYYA 780

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           +FP I  +I +  N  RQ  Y ET+FGRR++   I+S    +++  ER A+N PIQG+AA
Sbjct: 781 QFPSIRNFINQCVNKARQQHYAETLFGRRLYLPNIDSKNQGLKSEAERIAVNMPIQGTAA 840

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + AM+++HK + D +   KM+LQ+HDEL+FEV +E +     I+   ME A  PK  
Sbjct: 841 DLIKIAMLNIHKQI-DKREDIKMILQVHDELLFEVQQEALEETKNIVKTCMESALPPKYA 899

Query: 958 LRVPLKVNIKVSNNWQE 974
            +V LK ++ V  NW E
Sbjct: 900 EKVHLKTDVGVGKNWFE 916


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 338/985 (34%), Positives = 535/985 (54%), Gaps = 85/985 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   RKE+  +H  +
Sbjct: 13  LFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---RKEN-PTHIGI 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +EI G+EADD+I T
Sbjct: 67  AFDPSGPTFRHEAYEAYKAQREETPEAIRQSVPVIKDIIRAYHIPILEIAGYEADDVIGT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178
               A K G    +++ DKD  QLV     +Y     +K    + +E V  K+ I  P +
Sbjct: 127 LATEAGKRGINTYMMTPDKDYGQLVGEHVFMYRPKYGDKDFEVMGVEEVKAKFDIQSPLQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILE 235
           ++ +  L GD+ DNIPG PG+G KTA  L+ ++G++EN+L +   +K   +KK  EN   
Sbjct: 187 VIDMLGLMGDTADNIPGCPGVGEKTAQKLIAQFGSIENLLAHTDELKGAIKKKVEEN--- 243

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++TDVPIT+ +E L  E+ +   L    + LEF  LI+RV       
Sbjct: 244 -KEQITFSKFLATIKTDVPITLDMEALKREEPDEEELRRLFEMLEFRSLIDRV------- 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                             I  E +       +   F   +++ +        +   L RL
Sbjct: 296 ------------------IKTEKKAPSSPAAQPDLFGFFAEEDT-----ADAKNSILTRL 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + LS        Y  + N + +    +KL      S    T  +D   ++ + ++ S  +
Sbjct: 333 EDLSY------DYQLVDNKEKMAVLAEKLLAQKFFSLDTETTGIDPITAELVGMSFSFAE 386

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  ++ +  +  +  T        I++  K  FEN   LKIG NIKYD ++
Sbjct: 387 N--------QAFYVPVPANREEALT--------IVNIFKPAFENPDSLKIGQNIKYDLIM 430

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPI 530
           L  YG++++G   D M+  YVL      H +  +A+ +L Y     +E++ ++ K    +
Sbjct: 431 LANYGVTLKGKMFDTMIAHYVLQP-ELRHGMDYLAEIYLKYETIKIEELIGAKGKKQGNM 489

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++   V ++A E+++V L+L  +L  +L    +  ++E ++ P++ V++ ME  G++I
Sbjct: 490 RDLAPEAVYKYACEDADVTLKLKQVLENELETNGVKKLFEEIEMPLVPVLAYMERNGVRI 549

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQ 649
           D + LK+ S   +  +  +EE ++ L+G +FN++SPKQ+G++LF +LK    AK TKTGQ
Sbjct: 550 DTEALKETSRHFTARMNQIEEEVHQLAGMEFNIASPKQVGEVLFDRLKIVEKAKKTKTGQ 609

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +  G + I+  ILE R L K+  TY D+LP  IN  T R+HT ++   T 
Sbjct: 610 YVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPQLINPATGRIHTSFNQTVTA 668

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH++    + +
Sbjct: 669 TGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIE 728

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   DIH   AA+I+ V +E+V+ + R  AKT NF IIYGIS F LA +L + R EA 
Sbjct: 729 AFQKDQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGIIYGISVFGLAERLNVDRKEAK 788

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I  YF  +P +  Y++++    R+ GY+ETIF R+ +  +INS  + +R   ER AIN
Sbjct: 789 ALIDGYFENYPNVKAYMDQSIQEAREKGYIETIFKRKRYLPDINSKNAVVRGYAERNAIN 848

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AMI +++  ++  + +KM+LQ+HDEL F V  EE     QI++  ME
Sbjct: 849 APIQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELNFSVLPEEKEKVQQIVISEME 908

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      ++ PL+ +    +NW E
Sbjct: 909 AAY----KMKAPLRADHGWGHNWLE 929


>gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
 gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
          Length = 949

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 351/999 (35%), Positives = 542/999 (54%), Gaps = 77/999 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MDSGNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVSEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288
               E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDI 293

Query: 289 -------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
                  AT          P  L +   E  G+            +   F++ +      
Sbjct: 294 SGNGITSATGSKVATGKSAPSPLPLFPEEGGGM------------QGDLFANFTP----- 336

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
           +     +K  LE L+ L+       SY  I   +  Q+ +QKL T    S    T   + 
Sbjct: 337 DEPGEAKKSNLETLESLTY------SYQLIDTEEKRQEIIQKLLTSKILSLDTETTGTEP 390

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             ++ + ++ S  +         E  ++   V + QD   K      I++  +  FENE+
Sbjct: 391 MDAELVGMSFSIAEN--------EAFYV--PVPSDQDEALK------IVNEFRPVFENEN 434

Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
            LK+G NIKYD +VL  YG +++G   D M+  YVL      H +  +A+ +L Y     
Sbjct: 435 SLKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHI 493

Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            E++  + K+   +  +    V  +A E+++V L+L  +L  +L       ++  ++ P+
Sbjct: 494 DELIGPKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPL 553

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+  +E  G+ +D + LKQ SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF K
Sbjct: 554 VPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDK 613

Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           LK    AK TKTGQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN R
Sbjct: 614 LKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPR 672

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIEL
Sbjct: 673 TGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIEL 732

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+++   +   F ++ DIH   AA+I+  +++ V   MRR AKT NF IIYGIS F
Sbjct: 733 RIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISVF 792

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA ++ + R EA + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS 
Sbjct: 793 GLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSR 852

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            + +R   ER AINAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  
Sbjct: 853 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVN 912

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E     +I++  MEKA      + VPLK +     NW E
Sbjct: 913 EKERVEEIVIEEMEKAY----RMHVPLKADCGWGRNWLE 947


>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
 gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
          Length = 903

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 327/983 (33%), Positives = 517/983 (52%), Gaps = 102/983 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L DG++ ++RA++  P L+ +  G  V A  GF ++L K+L + + +     +A+ FD
Sbjct: 6   IVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPDC----YAISFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ DYKA RP +P+ L+ QL  VR    AF +P  E  GFEADD++ T   
Sbjct: 62  KKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLAT 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDIEHVIKKW 172
            A  EG  V I S D D MQLVSP               T LYD           V  K+
Sbjct: 122 RAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAA--------VRAKY 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ PE +   +AL GD  DNIPG+PGIG KTA  L++EYG +E+I  N  +I     ++ 
Sbjct: 174 GLGPEHVADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKK 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + + AE AR S+ L  +  D+P+   ++    E  N  +++   + LEF +LI+R+    
Sbjct: 234 LADNAEVARQSKILTTIVCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLIHRLPGG- 292

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                            EN G  +           T  F+             TPQK+  
Sbjct: 293 -----------------ENPGGGM-----------TDMFN-------------TPQKV-- 309

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                        ++   I N +++   V++L      +  +   + +A  ++  A+AIS
Sbjct: 310 -------------ETRYIIANGQNLDSIVKRLTETKELALAVSGTSEEAIDARLTALAIS 356

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             +         E  FI  S      ++       E    L     N++  K  HN KY 
Sbjct: 357 PAEG--------EAYFI--SAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTAHNAKYL 406

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
             +L   G  ++G + D ML +++L  G  +  I  +  +       ++      +    
Sbjct: 407 MNLLASAGQEIQGLDFDTMLSAHLL--GEKNLGIKDLVFEHFGVEIADVENILTQNGKKK 464

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             S S++ E A   ++   +L  L   +L    L+ ++  ++ P++ ++  ME +GI +D
Sbjct: 465 SFSASELSEAAQLVADYTFRLKGLFAAQLAETNLIDLFVNVEMPLVPILLGMERSGIMLD 524

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            DLLK ++ ++   +  LEE IY  +G  FN+ SP+QLG ILF +LK P   KTKTG + 
Sbjct: 525 TDLLKGMAEKVGGQIFKLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YS 583

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A+ L+++  G++ I+  ILE+R L K+KSTY D+LP  +N  T+R+HT ++   T TG
Sbjct: 584 TGAEVLDELK-GEHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATG 642

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIP++ ++G++IRRAFI+P    +++ DYSQI+LR+LAH++    L + F
Sbjct: 643 RLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAF 702

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AA +  +   +V+ + RR AKT+NF +IYG+S + L     +  +EA  +
Sbjct: 703 LKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKF 762

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           IK YF ++P +  Y  + K+  R NGYVET+ GRR +  EINSP   +R   ER AIN P
Sbjct: 763 IKAYFEKYPRVAIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMP 822

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG++ADI + AM+ + + L++ KL +++LLQ+HDEL+FEVP+ E+   S +++ +M  A
Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAELKRMSALLMETMSGA 882

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               +   +PLKV +K   NW +
Sbjct: 883 ----VTFEIPLKVELKSGANWGD 901


>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
 gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
          Length = 984

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 344/979 (35%), Positives = 527/979 (53%), Gaps = 73/979 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAFYA   L+   DG P NA+ G  NML +L    R E      A +FD
Sbjct: 66  LLLVDGSSYLYRAFYAMTHLTAP-DGTPTNAVYGVLNMLRRL----RAEQPHDFCACVFD 120

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+E++ DYKA RP +P+ L PQ  ++    +  G   +++   EADD+I T   
Sbjct: 121 AKGKNFRHELFEDYKATRPPMPDDLRPQADMLPELVELMGWKVLKVPQVEADDVIGTLAV 180

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +   V I + DKD+ QLVS    L +T+K E +D E V +K+G+ P+++    AL 
Sbjct: 181 QAAAQKMNVVISTGDKDMAQLVSEHITLVNTMKNETLDSEGVYQKFGVRPDQIRDFLALM 240

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD +DN+PG+   G KTAA  L EYG+L+NI+  A   K  K  EN+        LS +L
Sbjct: 241 GDKVDNVPGVEKCGEKTAAKWLAEYGSLDNIMRQADGFK-GKIGENLRAALPQLPLSYEL 299

Query: 247 VMLRT--DVPITIP--LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           V ++T  D+   +P  ++ L  +  +  +L+   + L F   +                 
Sbjct: 300 VTIKTDVDLSAELPNGMDDLRRKAPDWAQLVPHFRRLGFKTWLKEA-------------- 345

Query: 303 VLDINTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                  EN+     T+ +  D+  KT Q      +  + +    P++L           
Sbjct: 346 -------ENQSAQGHTDDLFADSDAKTVQKQPALPEPGERSIAPRPERL----------- 387

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  +   + +    ++L           T +++   ++ + I+I+     D   
Sbjct: 388 -----DYQTVTTREQLAALTERLAHSSVIGLDTETTSLEPMKAQLVGISIA-FGAGDAAY 441

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   F +    T            +I S L+ F EN    KIG N+KYD+ V   +GI
Sbjct: 442 IPVAHTFAEQLDWT------------DIKSSLQPFLENPQLGKIGQNMKYDQHVFANHGI 489

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537
           +++G   D ML SY+++S    H +  ++++WL   + T + +       IP   +   +
Sbjct: 490 ALQGISGDAMLASYIVES-HLGHGLDELSERWLQLPTITYESLCGKGAKQIPFADVPLDK 548

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E+A ++++  L++   LR ++  +K L +Y+ L+ P+  V+  ME  G+ ID + L Q
Sbjct: 549 AAEYACQDADFALRIEQHLRTQMD-DKQLAMYQELELPVAQVLFAMERNGVFIDSNELAQ 607

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQ 655
            SA++ K L  LE   + L+G+ FNL+SPKQL DILF ++  P+    KT  G + T   
Sbjct: 608 QSAQLGKELWQLENEAFALAGKPFNLNSPKQLQDILFNQMGLPTKGIKKTAGGSYSTDES 667

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ K IL+ R L+K+KSTY D LP  I   T RVHT Y+ A  +TGRLAS
Sbjct: 668 VLEKL-ADDFPLPKLILQHRSLAKLKSTYTDKLPEMILPATGRVHTNYAQAVAITGRLAS 726

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             PNLQNIPI+T+ G+++RRAF +P  + ++SADYSQIELRI+AH++    L   F+N+ 
Sbjct: 727 NNPNLQNIPIRTEQGRRVRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPTLQAAFQNNE 786

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR  AAE+FGV  E ++ + RR+AKTINF +IYG+S F LA  L I    A  +IKRY
Sbjct: 787 DVHRRTAAEVFGVPPEHITAEQRRYAKTINFGLIYGMSSFGLAKALGIDNMSAEMFIKRY 846

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+ G+ EY+E+TK   R  GYVET+FGRR++  +I+   +  R   ERAAINAP+QG+
Sbjct: 847 FARYTGVAEYMERTKEQARSLGYVETLFGRRLYLPDIHG-SAIRRAAAERAAINAPMQGT 905

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           A+D+ +RAMI V  +L   + + ++++Q+HDELV +VPE+E+      +   M    + +
Sbjct: 906 ASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPEDELAHIKAQLPQWMSD--VGE 963

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL   +    NW +
Sbjct: 964 GVLAVPLLAEVGAGKNWDD 982


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 325/980 (33%), Positives = 517/980 (52%), Gaps = 100/980 (10%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D    IYRA++A    P+  R  DG   +AI GF  ML++ +    KE    +  V
Sbjct: 4   LFLIDAYGLIYRAYFALIRAPM--RTKDGRNTSAIYGFFRMLFRFV----KEYDPVYCGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + D    TFR + +  YKA R K PE L PQ+P++    +A G   + + GFEADD++ T
Sbjct: 58  VLDSLTPTFREKTFEAYKATRQKTPEDLHPQIPVIEEILEALGFATVRMNGFEADDVMGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI--DIEHVIKKWGIPPEKMVC 181
              +A+ EG    ++S DKDL QLV+    +    K++ +  D E V +KWG+  +++V 
Sbjct: 118 LAAMAQAEGRPCFVVSGDKDLAQLVTKGVRIVRMDKDDFVILDEEGVKEKWGVRADQIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ETA 240
             AL GD+ DNIPG+ GIG KTA  LL EYG+LE +  +   +    R++  LE   E A
Sbjct: 178 FLALVGDASDNIPGVEGIGEKTARRLLAEYGSLEGVYAHLDELSPSLRKK--LEGGRERA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR L  +RTD+ +++ +E L   +    R      A +   L   V  +     A  E
Sbjct: 236 FLSRDLATIRTDLELSLTIEDLRRREPEVQRARELFLAYDIRSLAQEVGGS----PAVGE 291

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              L++      G++ E   DR +                                    
Sbjct: 292 KPTLEVEGPSRAGVSYEVVTDRAS------------------------------------ 315

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                           + +WV K    G  +    TD +D    + + ++++  + +   
Sbjct: 316 ----------------LARWVDKALERGVVAVDTETDGLDPLTCRLVGVSLAVDEGR--- 356

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L+    +       + +E+L+ L     ++   K+G N+K+D  VL R+G
Sbjct: 357 -----ACYVPLAAPDVRPLPAD--VVREVLTPL---LASQKVSKVGQNLKFDYHVLRRWG 406

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS--SIPIDKIS 534
           +   G F D M+ +++L+S    +++  +A+K+L +     K++++   S  ++P+    
Sbjct: 407 VRPEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTIHYKDVVEKGASFETVPV---- 462

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            ++   +A E++++ L+L  +L+ +L    L  V+  ++ P++ ++++ME  GI +D + 
Sbjct: 463 -AEAGVYAAEDADIALRLSRVLKERLEAGDLGRVFYEMEMPLLSILARMEEWGIGLDGEA 521

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L     E+ + + ++E  I+DL G +FN+ S KQL ++LF +   P   KTKTG + T  
Sbjct: 522 LSAFGRELDERISNIENEIFDLVGHEFNVGSTKQLQEVLFVERGLPPVKKTKTG-FSTDT 580

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++   D P+   +LE+R L+K+K+TY D LP  +N  T R+HT++S   T TGRL+
Sbjct: 581 SVLEELAAQD-PVAAKVLEYRSLTKLKNTYVDVLPGLVNPETGRLHTWFSQVGTATGRLS 639

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPIKT+ G++IR AF+       +SADYSQIEL ILAH++    L + F   
Sbjct: 640 SKDPNLQNIPIKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSGDPALCRAFREG 699

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+HR   + +FGV  E V+P+ RR AKTINF +IYG+S FRL+ +L IPR EA  +I  
Sbjct: 700 EDVHRATGSLLFGVPPETVTPEQRRIAKTINFGVIYGMSAFRLSRELGIPRKEAERFINA 759

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  + G+  +IE+T     + GYV T+FGR+     I S   + +   ER A+N PIQG
Sbjct: 760 YFTTYAGVRAFIERTIAEAEEKGYVTTLFGRKRPLPYITSRNKTQKTGAERIAVNTPIQG 819

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           S ADI + AMI +   +    LA++M+LQ+HDEL+FEVP EE+    +++   ME     
Sbjct: 820 SGADIIKLAMIDLDAQMRRMGLASRMILQVHDELIFEVPPEELEVMKRLVRERMEGV--- 876

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            + L VPL+V I V  NW E
Sbjct: 877 -VRLSVPLRVEIGVGRNWGE 895


>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
 gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
          Length = 949

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 350/999 (35%), Positives = 543/999 (54%), Gaps = 77/999 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MDSGNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPVQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288
               E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDI 293

Query: 289 -------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
                  AT          P  L +   E  G+            +   F++ +      
Sbjct: 294 SGNGITSATGSKVATGKSAPSPLPLFPEEGGGM------------QGDLFANFTP----- 336

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
           +     +K  LE L+ L+       SY  I   +  Q+ +QKL T    S    T   + 
Sbjct: 337 DEPGEAKKSNLETLESLTY------SYQLIDTEEKRQEIIQKLLTSKILSLDTETTGTEP 390

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             ++ + ++ S  +         E  ++   V + QD   K      I++  +  FENE+
Sbjct: 391 MDAELVGMSFSIAEN--------EAFYV--PVPSDQDEALK------IVNEFRPVFENEN 434

Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
            LK+G NIKYD +VL  YG +++G   D M+  YVL      H +  +A+ +L Y     
Sbjct: 435 SLKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHI 493

Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            E++  + K+   +  +    V  +A E+++V L+L  +L  +L       ++  ++ P+
Sbjct: 494 DELIGPKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPL 553

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+  +E  G+ +D + LKQ SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF K
Sbjct: 554 VPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDK 613

Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           LK    AK TKTGQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN R
Sbjct: 614 LKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPR 672

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIEL
Sbjct: 673 TGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIEL 732

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+++   +   F ++ DIH   AA+++ ++++ V   MRR AKT NF IIYGIS F
Sbjct: 733 RIMAHLSEDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF 792

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA ++ + R EA + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS 
Sbjct: 793 GLAERMNVDRKEAKELIDGYFETYPGVKVYMDKSIQVAQEKGYVETIFHRKRFLPDINSR 852

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            + +R   ER AINAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  
Sbjct: 853 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVN 912

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E     +I++  MEKA      + VPLK +     NW E
Sbjct: 913 EKERVEEIVIEEMEKAY----RMHVPLKADCGWGKNWLE 947


>gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068]
 gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068]
          Length = 966

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 331/981 (33%), Positives = 534/981 (54%), Gaps = 46/981 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++ ++++D  S IY+ F+A P ++    G PV A+ GF   +  L++N   E I +    
Sbjct: 16  DSTVYVIDAHSLIYQVFHAMPEMTSPS-GQPVGAVQGFVRDMLDLIENRSAEYIVA---- 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+P+ TFR+ +Y +YK +R ++P  L  Q+P+++    A GI  + I GFEADDI+AT
Sbjct: 71  AFDHPSPTFRHTMYENYKVHRDEMPGDLQSQIPIIQQFLDALGITQLSIPGFEADDILAT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                  +G    ++++DKD  QL++    + +  K E  D   ++  WGI P+++V  Q
Sbjct: 131 LAKRVASDGGRCLVVTSDKDCRQLINDRVQMLNLRKNEIFDDVALMATWGIRPDQVVDFQ 190

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           +L GDS+DN+PG+P IG K A  LL +Y  LE +L NA ++   KR+EN+  + + A LS
Sbjct: 191 SLVGDSVDNVPGVPLIGPKIAQELLAKYETLEGVLDNADQVSGAKRKENLKNFRDQAFLS 250

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R LV L+ D+   +    + +       L+   +A  F +L+ R+       A    P  
Sbjct: 251 RDLVRLKNDMEFDLDWSSVRVGRYQIEMLMELCRACGFRQLLTRIEKL----AKRGAPAK 306

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
              +T  +  I    + DRDT         L   T   +S+ +P         +++  P 
Sbjct: 307 SSRSTGYSSSIPA-PQRDRDTPP-----DELYAGTEAADSQTSPSGSLGP---QVAAAPW 357

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
              +Y ++ +   ++  + +++  GS      T ++    ++ +  +    D        
Sbjct: 358 EA-TYRRVESLDQLRTIIDEIKAAGSLVIDTETTSVQPRWAEIVGYSFCYRDG------- 409

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            E  +  L +   ++          +    +   E+    K+G NIKYD +VL   GI +
Sbjct: 410 -EAWY--LPIRAPENEQALCLDATAVADLFRPVLEDPAIAKVGQNIKYDMVVLRSAGIEL 466

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQVQ 539
           RG   D M+  Y++D G  SH++  +A++ L +   EI   + + K  I +D++  + + 
Sbjct: 467 RGAAFDTMVADYLIDPGERSHNLDELARRHLGHQNIEIESLIGTGKKQIRMDQVPLAAIT 526

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A E++ V  +L  +L P+L  + L+ ++  L+ P+++V++++E  GI++D+  L ++S
Sbjct: 527 DYAAEDALVPYRLLPILEPRLEQDGLVPLFRDLEMPLVEVLAELEHRGIKVDRARLVELS 586

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            + S  + +LE  IY ++  +FN+ S  QL  +LF  LK P   KTKTG     A+ LE 
Sbjct: 587 TDFSTKITALENEIYAINHGEFNIDSRLQLAKLLFEDLKLPILKKTKTGP-SMDAEVLED 645

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + + K +LE+R L+K++STY DSL   I+  T RVHT        TGRL+S +PN
Sbjct: 646 L-ARLHELPKKVLEYRHLAKLRSTYVDSLQELIHPVTGRVHTSLKQDVAATGRLSSQDPN 704

Query: 720 LQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           LQNIP++T  G+ IR AF  P  +  KL++ADYSQIELR+LAH +    L + F +  DI
Sbjct: 705 LQNIPVRTAEGRAIRSAF-QPGIEGWKLMAADYSQIELRVLAHFSGDAALAEAFASDRDI 763

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H  VA++++ V    V+P+MRR AK INF +IYG SPF LA  L I   EAA +I  YF 
Sbjct: 764 HTQVASQVYEVAPGDVTPEMRRSAKAINFGVIYGQSPFGLARSLGIENDEAAAFISAYFA 823

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS----SIRNINERAAINAPIQ 893
           ++PG+ +++ +T    R+ GYV TI GRR     +  P +      R + ER AIN  IQ
Sbjct: 824 QYPGVDDFMRETLIGCRKQGYVTTIAGRRRPVTGVRDPHAVNDKRQRTLPERIAINTVIQ 883

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI +RAMI+VH+ L++ KL  +MLLQIHDEL+FE P EE      ++V SM  A  
Sbjct: 884 GSAADIIKRAMITVHRRLKEEKLQARMLLQIHDELLFEFPPEEQGQLRDLVVESMSTAE- 942

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               + VPLK+++K   NW +
Sbjct: 943 ---KISVPLKIDVKTGLNWAD 960


>gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120]
          Length = 810

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 316/858 (36%), Positives = 481/858 (56%), Gaps = 67/858 (7%)

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   AL G
Sbjct: 7   AEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 66

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETAR 241
           DS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  E A 
Sbjct: 67  DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAY 126

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A   +P
Sbjct: 127 LSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAKGAKP 186

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                       Q +S++D+  ++ +                  
Sbjct: 187 AA------------------------KPQETSVADEAPEVTATV---------------- 206

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++      
Sbjct: 207 -ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAY 264

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L  YGI
Sbjct: 265 IPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGI 315

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537
            +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I+  +
Sbjct: 316 ELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEE 375

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E+S+V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L 
Sbjct: 376 AGRYAAEDSDVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLH 435

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + 
Sbjct: 436 NHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEV 495

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S 
Sbjct: 496 LEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSST 554

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    D
Sbjct: 555 DPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKD 614

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF
Sbjct: 615 IHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYF 674

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+A
Sbjct: 675 ERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTA 734

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C    
Sbjct: 735 ADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---T 790

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL V +    NW +
Sbjct: 791 RLDVPLLVEVGSGENWDQ 808


>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
 gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
          Length = 949

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 349/999 (34%), Positives = 543/999 (54%), Gaps = 77/999 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MDSGNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288
               E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDI 293

Query: 289 -------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
                  AT          P  L +   E  G+            +   F++ +      
Sbjct: 294 SGNGITSATGSKVATGKSTPSPLPLFPEEGGGM------------QGDLFANFTP----- 336

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
           +     +K  LE L+ L+       +Y  +   +  Q+ +QKL T    S    T   + 
Sbjct: 337 DEPGEAKKSNLETLESLTY------NYQLVDTEEKRQEIIQKLLTSKILSLDTETTGTEP 390

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             ++ + ++ S  +         E  ++   V + QD   K      I++  +  FENE+
Sbjct: 391 MDAELVGMSFSIAEN--------EAFYV--PVPSDQDEALK------IVNEFRPVFENEN 434

Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
            LK+G NIKYD +VL  YG +++G   D M+  YVL      H +  +A+ +L Y     
Sbjct: 435 SLKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHI 493

Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            E++  + K+   +  +    V  +A E+++V L+L  +L  +L       ++  ++ P+
Sbjct: 494 DELIGPKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPL 553

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+  +E  G+ +D + LKQ SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF K
Sbjct: 554 VPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDK 613

Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           LK    AK TKTGQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN R
Sbjct: 614 LKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPR 672

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIEL
Sbjct: 673 TGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIEL 732

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+++   +   F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F
Sbjct: 733 RIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISVF 792

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA ++ + R EA + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS 
Sbjct: 793 GLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSR 852

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            + +R   ER AINAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  
Sbjct: 853 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVN 912

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E     +I++  MEKA      + VPLK +     NW E
Sbjct: 913 EKERVEEIVIEEMEKAY----RMHVPLKADCGWGKNWLE 947


>gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2]
 gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2]
 gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
          Length = 949

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 349/999 (34%), Positives = 543/999 (54%), Gaps = 77/999 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MDSGNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPTQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVSEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288
               E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDI 293

Query: 289 -------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
                  AT          P  L +   E  G+            +   F++ +      
Sbjct: 294 SGNGITSATGSKVATGKSAPSPLPLFPEEGGGM------------QGDLFANFTP----- 336

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
           +     +K  LE L+ L+       SY  I   +  ++ +QKL T    S    T   + 
Sbjct: 337 DEPGEAKKSNLETLESLTY------SYQLIDTEEKRREIIQKLLTSKILSLDTETTGTEP 390

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             ++ + ++ S  +         E  ++   V + QD   K      I++  +  FENE+
Sbjct: 391 MDAELVGMSFSIAEN--------EAFYV--PVPSDQDEALK------IVNEFRPVFENEN 434

Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
            LK+G NIKYD +VL  YG +++G   D M+  YVL      H +  +A+ +L Y     
Sbjct: 435 SLKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHI 493

Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            E++  + K+   +  +    V  +A E+++V L+L  +L  +L       ++  ++ P+
Sbjct: 494 DELIGPKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPL 553

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+  +E  G+ +D + LKQ SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF K
Sbjct: 554 VPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDK 613

Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           LK    AK TKTGQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN R
Sbjct: 614 LKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPR 672

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIEL
Sbjct: 673 TGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIEL 732

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+++   +   F ++ DIH   AA+++ ++++ V   MRR AKT NF IIYGIS F
Sbjct: 733 RIMAHLSEDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF 792

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA ++ + R EA + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS 
Sbjct: 793 GLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSR 852

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            + +R   ER AINAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  
Sbjct: 853 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVN 912

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E     +I++  MEKA      + VPLK +     NW E
Sbjct: 913 EKERVEEIVIEEMEKAY----RMHVPLKADCGWGKNWLE 947


>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
 gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
          Length = 917

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 332/993 (33%), Positives = 522/993 (52%), Gaps = 112/993 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDG    YRA++A P       G P + + GF +ML ++L +   + +     
Sbjct: 6   RRPRLVLVDGHGLAYRAYHALPPTLATSAGEPTHVVFGFASMLLEVLNDFEPDYVI---- 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    +FR ++Y +YKA+RP+ P+ L  QL  +R    A GIP +  +G+EADD+I 
Sbjct: 62  VCFDT-GRSFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPE 177
           T    A   G  V I++ D DL+QLV     +    ++        D + VI+++G PPE
Sbjct: 121 TLAARATANGLEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++   +AL GD  DNIPG+PGIG KTA  L+Q + +LE +L    RI             
Sbjct: 181 RLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEML---DRI------------- 224

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                                      ++   PRL   L+A   T L +R   T      
Sbjct: 225 ---------------------------DEVEPPRLREALRAARETVLASRRLAT------ 251

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTI---KTSQFSSLSDQTSKINSEQTPQKLFLER 354
               +V D + T +   A   + DR+  +   +  +F SL          + PQ      
Sbjct: 252 ----IVRDADITLDLEQARFGDFDRERVLQLFRELEFRSLV--------PRLPQPR---- 295

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            Q + +          ++   D+   V+ LET  + +  + T  +   ++  + IA++T 
Sbjct: 296 -QPVRKTAAPASQRRAVLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALAT- 353

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
               D S+     ++ L  HT+ D+       +++L  L  F  +    +  H+ KYD L
Sbjct: 354 --APDRSY-----YVPLG-HTTGDT---QLDIEQVLQRLAPFLRHPEKQRYAHHGKYDAL 402

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPI 530
           VL R G      + D M+ +Y+L  G ++  +  +A   L +  +EI   +   K  + +
Sbjct: 403 VLERAGFPRPHIDFDTMIAAYLL--GENAVGLKELAFTKLGWEMEEITELIGRGKKQLTM 460

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D+   ++V ++A  +     +L  +LRP+L     L ++  ++ P+IDV+  ME  GI I
Sbjct: 461 DRAEIARVTQYACADVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAI 520

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L+Q+S  +   L +LE  IY+L+G  FN++SP+QL  +LF +L  P G +TKTG +
Sbjct: 521 DVPYLEQLSIMLDGQLHALERRIYELAGHPFNINSPQQLSTLLFDELGLPRGKRTKTG-Y 579

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             + + LE +    +PI++ ILE+RQL K+KSTY D+LP  ++ +T RVHT +      T
Sbjct: 580 SVSQEVLENLR-DTHPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAAT 638

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP--PTKK-------LISADYSQIELRILAHI 761
           GRL+S +PNLQNIP + +LG  +RRAFI+   P  +       L+S DYSQIELR++AH 
Sbjct: 639 GRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHF 698

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L + F    DIH   A+E+FGV ++ V+P+MRR AK +NF I+YG+  + LA   
Sbjct: 699 SQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDT 758

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            + R +A  +I+ YF RFPG+  Y+E+T+    + GYVET+FGRR +  EI S   + R 
Sbjct: 759 GMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQ 818

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+N P+QG+AADI + AMI+VH++L +  L ++MLLQ+HDELV EVPE E+ T +
Sbjct: 819 AAERMAVNMPLQGTAADIMKLAMIAVHRALAERGLRSRMLLQVHDELVLEVPESELATTT 878

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +++   M +     + L VPL+V+ K   NW +
Sbjct: 879 ELVTTRMSRV----VELSVPLEVDAKAGPNWAD 907


>gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
 gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
          Length = 949

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 344/994 (34%), Positives = 540/994 (54%), Gaps = 67/994 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MESDNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKEIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + ++ V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGIITYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVDEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++ DVPI + ++ L+ E  +   L    + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLDMDSLVREQADEDSLRQIFEELEFRTLIDRVLKK-- 291

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS---DQTSKINSEQ----T 346
                           EN G  I T     T  + S  + L    ++   +  +     T
Sbjct: 292 ----------------ENAGNGITTPTGNKTAAEKSNLAPLPLFPEEGGAVQGDLFANFT 335

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
             +    +   L+     N  Y  I   +   + +QKL T    S    T   +   ++ 
Sbjct: 336 GNEPGEAKNSNLATLETLNCDYQLIDTEEKRTKIIQKLLTSKILSLDTETTGTEPMDAEL 395

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + ++ S  +         E  ++   V   Q+   K      I++  +  FENE+ LK+G
Sbjct: 396 VGMSFSIAEN--------EAFYV--PVPADQEEALK------IVNEFRPVFENENSLKVG 439

Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK 522
            NIKYD +VL  YG+ ++G   D M+  YVL      H +  +A+ +L Y      E++ 
Sbjct: 440 QNIKYDMIVLQNYGVQVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLRYQTIHIDELIG 498

Query: 523 SR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            + K+   +  ++   V  +A E+++V L+L  +L  +L       ++  ++ P++ V+ 
Sbjct: 499 PKGKNQKNMRDLAPKDVYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLV 558

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            +E  G+ +D + LKQ SA  +  + ++E+ IY+L+GE FN++SPKQ+G++LF KL+   
Sbjct: 559 NIERNGVLLDTEALKQSSAHFTAQMENIEKEIYELAGETFNIASPKQVGEVLFDKLRIVE 618

Query: 642 GAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
            AK TKTGQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVH
Sbjct: 619 KAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVH 677

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH
Sbjct: 678 TSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAH 737

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   +   F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA +
Sbjct: 738 LSEDKNMIDAFLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISVFGLAER 797

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           + + R EA + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R
Sbjct: 798 MNVERKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVR 857

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER AINAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP EE    
Sbjct: 858 GYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVEEKERV 917

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +I++  ME A      + VPLK +     NW E
Sbjct: 918 EEIVIEEMEHA----YRMHVPLKADCGWGKNWLE 947


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 346/993 (34%), Positives = 540/993 (54%), Gaps = 75/993 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           K++ +F++D    IYR+++A    PL +    G  ++A+ GF   L+ +L++   +    
Sbjct: 2   KDDVVFILDAYGLIYRSYFAFVGKPLTNST--GKNISAVFGFFKSLYTILRDYEPQ---- 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            FAV  D    TFR+E+Y +YKA R K PE L  Q+P++     A GI  +   GFEADD
Sbjct: 56  FFAVAMDSRVPTFRHEMYCEYKATRDKTPEDLHAQIPIIEEILTALGITLMRKDGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPP 176
           +IA+    A  +     IIS+DKDLMQL+     +    K +     + + V ++WG+PP
Sbjct: 116 VIASIAKCASADNKKAVIISSDKDLMQLIDDKITMLKPNKADAWIAFNADDVKEQWGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +M+   +L GD+ DN+PG+  IG KTAA LL EYG+L+ I  +   +K   +++ I+E 
Sbjct: 176 NQMLDFLSLIGDTADNVPGVKSIGPKTAAKLLDEYGSLDGIYAHTDSLKGAMQKK-IIEG 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS------FLKALEFTKLINRVAT 290
            E A  S+KL+ L         LE  +L D   P L        FL+  E   L  + A 
Sbjct: 235 KENAYFSKKLIALEDSA-----LEKCVLSDFACPVLDYAAAAKIFLRE-ELPSLARQYAP 288

Query: 291 TYDCDAANIEPVVLDINTT-ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
             D    +   +V   ++  E K  A     +  TT    + +S S    K         
Sbjct: 289 NADFVKTDEAFLVRSADSKKEKKQGANSAGANPITTSPLQEIASASGGFKK--------- 339

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
                         N  +Y  I   +++++ +      G A+F   T  ++   ++   +
Sbjct: 340 --------------NAGNYRGITEPEELRKLIDAAIAQGFAAFDCETTGLNPLEAE---L 382

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A  +L  K + +F +    + L     Q    +    ++ +S L + ++ ++   I HN 
Sbjct: 383 AGFSLALKAEEAFYIP---VKLPPPELQSQAPQPMPLEKAVSELARLWQQKNLTIIMHNG 439

Query: 470 KYDKLVLHRYGISMR---GFEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKS 523
           K+D   +   G+  +      D M+ +++LD  R+S  + S+A   L   +   K+++  
Sbjct: 440 KFDYQAMRTAGVFEKTPCAIFDTMIAAWLLDPDRTSFSLDSLASSLLKLQTIAYKDVVPK 499

Query: 524 RK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            K  S +P +     Q   +A E++++ LQ +  L PKL    L  +++ L+ P++ +++
Sbjct: 500 GKIFSDVPYE-----QAVAYAAEDADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLA 554

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L + S E+ K ++  E  I+D+ G +FN++SPKQL ++LFT+LK P+
Sbjct: 555 EMEIAGIFLKKEELAEFSEELGKEIIVHEREIFDIVGHEFNIASPKQLQEVLFTELKLPT 614

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           G KTKTG + T    LE +   ++ I   ILE+R L+K+KSTY D+LP   +K   RVHT
Sbjct: 615 GKKTKTG-YSTDTSVLE-VLASEHVIPAKILEYRALTKLKSTYTDALPALADKNG-RVHT 671

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +    T TGRL+S +PNLQNIPI+ + G++IR+AF +   K LISADY+QIEL ILAH+
Sbjct: 672 SFIQTGTATGRLSSRDPNLQNIPIRDEAGRRIRKAFQAEKGKNLISADYAQIELVILAHL 731

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L Q F+   D+H   AA IFG+ I +V P MRR AKTINF ++YG+S FRL+  L
Sbjct: 732 SQDKNLVQAFQEGTDVHAATAALIFGMPIGEVLPDMRRIAKTINFGVMYGMSAFRLSNAL 791

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
           RIPR +AAD+I+ YF  + G+H ++E+ K   R+ GYVET+ GRR +   INS     + 
Sbjct: 792 RIPRRQAADFIETYFKTYSGVHIFMEELKESARRKGYVETLMGRRRYIYAINSANKLEQA 851

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER AIN PIQGSAADI + AM+ V  +L+ HKL  K+LLQ+HDEL+ E PE+E  T  
Sbjct: 852 GAERVAINTPIQGSAADIVKTAMLKVQNALQAHKLQAKLLLQVHDELICEAPEKETETVK 911

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++   ME      + L VPL+VNI+    W +
Sbjct: 912 TLLRQEMESV----VKLLVPLRVNIESGKTWGD 940


>gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
 gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
          Length = 894

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 338/978 (34%), Positives = 534/978 (54%), Gaps = 98/978 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + ++DG+S I RAFYA P L+ K +G   NAI GF  ML K++++   + I     V
Sbjct: 2   EKRIVIIDGNSLINRAFYALPPLTNK-EGQHTNAIYGFVTMLLKVMEDYAPDYIG----V 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++ Y +YKA R  +P  L  QL  ++    A  I  IE++GFEADD+I T
Sbjct: 57  AFDKKAPTFRHKEYTEYKAGRKGMPPELAEQLEPLKQVLDALNIYRIELEGFEADDLIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                E +G    I++ D+D +QL S TT +  T K     E  D + V++ + + P + 
Sbjct: 117 LAKHCEAQGIESLIVTGDRDALQLTSDTTKVLFTKKGISQLEIYDAKKVMEDYEVTPTQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PG+G KTA  LL+++  +EN++ N S I   K R+ I E  E 
Sbjct: 177 IDLKGLMGDKSDNIPGVPGVGEKTAIKLLKQFETIENMIQNTSEIAADKLRQKIEENIEM 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  + T+V                                              
Sbjct: 237 AVLSKRLATIVTNV---------------------------------------------- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV +D++    K    E  I+     +  +F+SL  +  K N EQT         Q++S
Sbjct: 251 -PVEMDLDILRKKEFDYERLIE---LFRMYEFNSLIPRIKK-NMEQT---------QEIS 296

Query: 360 QYPINN-DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
              + N ++   I +T  +++ ++++   G    K IT+  +    + +A+A++T  +  
Sbjct: 297 TANLGNRENIVAIKDTDALKKALEEIREQGQMVLKTITEENNIVTDRIVALAMTTTGE-- 354

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
              + +E  F D                 +I+S LK   E+EH   IGH++K + +  + 
Sbjct: 355 -IQYYIE--FKDFK-------------ESDIISPLKDILEDEHIRIIGHDLKKEIIHFYP 398

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           Y I +   + D M+  Y+L+  +SS+ +  +A ++L       ++I+   K+ + +    
Sbjct: 399 YEIHIANLYFDTMVGEYLLNPAKSSYLLKDLALEYLGEEIIDEEKIVGKGKNQLSLWAAP 458

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +++V+     +  VI +L   ++ K+  + +  +Y  ++ P+++V++ ME  GI++D+++
Sbjct: 459 ENEVKALLCNHVKVIAELAKYIQEKIEDQGIHKLYYEVELPLVEVLASMEFLGIKVDRNM 518

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  +  E  + +  L   IY L+G  FN++SPKQLG++LF KL  P   KTKTG + T A
Sbjct: 519 LLALEVEFKEIIDKLTSEIYSLAGISFNINSPKQLGEVLFEKLGLPPTKKTKTG-YSTNA 577

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    + II  I E+RQ++K+K+TY D L + IN  T R+H+ ++   T TGR++
Sbjct: 578 DVLEKLQ-DQHEIIPKISEYRQVTKLKTTYVDGLLSIINPVTNRIHSSFNQTVTATGRIS 636

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP++ ++G+++R+ FIS    + I ADYSQIELR+LAHIAK   L   F  +
Sbjct: 637 STEPNLQNIPVRLEMGRRLRKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLIDAFIKN 696

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+EIF V +E+V+  MR  AK +NF I+YGIS F L+  L IP S+A  YI+ 
Sbjct: 697 QDIHTRTASEIFEVPMEEVTSLMRGDAKAVNFGIVYGISDFGLSQNLNIPVSKAKKYIES 756

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF ++P I EY+       ++ GYV T+  RR +  E+ S   +IR+  ER A+N PIQG
Sbjct: 757 YFEKYPSIKEYMHNIVEEGKEKGYVVTLLNRRRYLPELKSSNFNIRSFGERIAMNTPIQG 816

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI+V+  L+      K++LQ+HDEL+ E PE EI   S+I+  SME A   
Sbjct: 817 SAADIIKIAMIAVYNRLKAENYDAKLILQVHDELIIECPENEIEEVSKILKESMENA--- 873

Query: 955 KINLRVPLKVNIKVSNNW 972
            I + VPLKV++  +NNW
Sbjct: 874 -IEMVVPLKVDLSYANNW 890


>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
 gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
          Length = 949

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 348/999 (34%), Positives = 543/999 (54%), Gaps = 77/999 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MDSGNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPTQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVSEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288
               E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDI 293

Query: 289 -------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
                  AT          P  L +   E  G+            +   F++ +      
Sbjct: 294 SGNGITSATGSKVATGKSAPSPLPLFPEEGGGM------------QGDLFANFTP----- 336

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
           +     +K  LE L+ L+       +Y  I   +  ++ +QKL T    S    T   + 
Sbjct: 337 DEPGEAKKSNLETLESLTY------NYQLIDTEEKRRKIIQKLLTSKILSLDTETTGTEP 390

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             ++ + ++ S  +         E  ++   V + QD   K      I++  +  FENE+
Sbjct: 391 MDAELVGMSFSIAEN--------EAFYV--PVPSDQDKALK------IVNEFRPVFENEN 434

Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
            LK+G NIKYD +VL  YG +++G   D M+  YVL      H +  +A+ +L Y     
Sbjct: 435 SLKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHI 493

Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            E++  + K+   +  +    V  +A E+++V L+L  +L  +L       ++  ++ P+
Sbjct: 494 DELIGPKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPL 553

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+  +E  G+ +D + LKQ SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF K
Sbjct: 554 VPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDK 613

Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           LK    AK TKTGQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN R
Sbjct: 614 LKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPR 672

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIEL
Sbjct: 673 TGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIEL 732

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+++   +   F ++ DIH   AA+++ ++++ V   MRR AKT NF IIYGIS F
Sbjct: 733 RIMAHLSEDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF 792

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA ++ + R EA + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS 
Sbjct: 793 GLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSR 852

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            + +R   ER AINAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  
Sbjct: 853 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVN 912

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E     +I++  MEKA      + VPLK +     NW E
Sbjct: 913 EKERVEEIVIEEMEKAY----RMHVPLKADCGWGKNWLE 947


>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 332/993 (33%), Positives = 521/993 (52%), Gaps = 112/993 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDG    YRA++A P       G P + + GF +ML ++L +   + +     
Sbjct: 6   RRPRLVLVDGHGLAYRAYHALPPTLATSAGEPTHVVFGFASMLLEVLNDFEPDYVI---- 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    +FR ++Y +YKA+RP+ P+ L  QL  +R    A GIP +  +G+EADD+I 
Sbjct: 62  VCFDT-GRSFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPE 177
           T    A   G  V I++ D DL+QLV     +    ++        D + VI+++G PPE
Sbjct: 121 TLAARATANGLEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++   +AL GD  DNIPG+PGIG KTA  L+Q + +LE +L    RI             
Sbjct: 181 RLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEML---DRI------------- 224

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                                      ++   PRL   L+A   T L +R   T      
Sbjct: 225 ---------------------------DEVEPPRLREALRAARETVLASRRLAT------ 251

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTI---KTSQFSSLSDQTSKINSEQTPQKLFLER 354
               +V D + T +   A   + DR+  +   +  +F SL          + PQ      
Sbjct: 252 ----IVRDADITLDLEQARFGDFDRERVLQLFRELEFRSLV--------PRLPQPR---- 295

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            Q + +          ++   D+   V+ LET  + +  + T  +   ++  + IA++T 
Sbjct: 296 -QPVRKTAAPASQRRAVLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALAT- 353

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
               D S+     ++ L  HT+ D+       +++L  L  F  +    +  H+ KYD L
Sbjct: 354 --APDRSY-----YVPLG-HTTGDT---QLDIEQVLQRLAPFLRHPEKQRYAHHGKYDAL 402

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPI 530
           VL R G      + D M+ +Y+L  G ++  +  +A   L +  +EI   +   K  + +
Sbjct: 403 VLERAGFPRPHIDFDTMIAAYLL--GENAVGLKELAFTKLGWEMEEITELIGRGKKQLTM 460

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D+   ++V ++A  +     +L  +LRP+L     L ++  ++ P+IDV+  ME  GI I
Sbjct: 461 DRAEIARVTQYACADVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAI 520

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L+Q+S  +   L +LE  IY+L+G  FN++SP+QL  +LF +L  P G +TKTG +
Sbjct: 521 DVPYLEQLSIMLDGQLHALERRIYELAGHPFNINSPQQLSTLLFDELGLPRGKRTKTG-Y 579

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             + + LE +    +PI++ ILE+RQL K+KSTY D+LP  ++ +T RVHT +      T
Sbjct: 580 SVSQEVLENLR-DTHPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAAT 638

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP--PTKK-------LISADYSQIELRILAHI 761
           GRL+S +PNLQNIP + +LG  +RRAFI+   P  +       L+S DYSQIELR++AH 
Sbjct: 639 GRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHF 698

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L + F    DIH   A+E+FGV ++ V+P+MRR AK +NF I+YG+  + LA   
Sbjct: 699 SQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDT 758

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            + R +A  +I+ YF RFPG+  Y+E+T+    + GYVET+FGRR +  EI S   + R 
Sbjct: 759 GMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQ 818

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+N P+QG+AADI + AMI+VH+ L +  L ++MLLQ+HDELV EVPE E+ T +
Sbjct: 819 AAERMAVNMPLQGTAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTT 878

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +++   M +     + L VPL+V+ K   NW +
Sbjct: 879 ELVTTRMSRV----VELSVPLEVDAKAGPNWAD 907


>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
 gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
          Length = 920

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 332/986 (33%), Positives = 531/986 (53%), Gaps = 85/986 (8%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N LFL+D  + I+R++YA    P ++ K  GL  +AI GF N L +++   +     ++ 
Sbjct: 2   NKLFLLDAYALIFRSYYALIRAPRINSK--GLNTSAILGFVNTLNEIITKEK----PTYI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E +P YKA R + PE +   +P ++   +AF IP ++++GFEADD+I
Sbjct: 56  GVAFDL-GKTFRHEAFPPYKAQRQETPEDITFSVPFIKDILRAFHIPILQVEGFEADDVI 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PE 177
            T    A KEG A  +++ DKD  QL+     +Y        DI   + + +K+GI  P 
Sbjct: 115 GTLATKAGKEGIATYMLTPDKDYGQLIRENVFMYRPRHGGGYDIIGEQEIAEKYGISTPA 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GDS DN PG PG+G KTA  L+ E+G+++ ++ +  ++K  K RE +    
Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTAVKLINEFGSIDELISHTDKLK-GKMREKVEGAI 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++S+ L  +RTDVP+ + L+ L L+  +  +L      LEF  L N++         
Sbjct: 234 EDIKMSKFLATIRTDVPVELNLDELQLQAPDEQKLSEIFAELEFKSLANKI--------- 284

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   +N TE K  ++ +E+D           +++   S++ SE        E L+ 
Sbjct: 285 --------LNKTEQKQKSVNSELD---------LFAVNPHESQVASENAS----FESLKT 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +         Y  I N ++  +      T    S    T + +A  ++ + +  +  + K
Sbjct: 324 IKH------DYQLIENQEEAHRICDFFRTKRILSLDTETTSTNAIDAELVGLCFAVEEHK 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
                          V    D        +E L Y+  F   +E+   LKIG N+KYD  
Sbjct: 378 A------------FYVAIPNDR-------EEALQYVNIFKPVYEDPSILKIGQNLKYDYE 418

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIP 529
           VL  YG+++ G   D ML  YV+      H++  +A+  L Y      E++  R K    
Sbjct: 419 VLKNYGVTLGGKMFDTMLAHYVIQP-ELHHNMDYMAETLLHYKTIHIDELIGPRGKHQKS 477

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +    V E+A E++++ LQL  +L PKL      +++  ++ P++ V++ ME+ G++
Sbjct: 478 MRDLDPKDVYEYAAEDADITLQLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVR 537

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTG 648
           +D D L   S   ++ +  LE+ IY+ +GE FN+SSPKQ+GDILF K++      KTKTG
Sbjct: 538 LDTDALHDTSMIFTERMNRLEQQIYEKAGETFNISSPKQVGDILFGKMQIMEKPKKTKTG 597

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + L+ +    +PI+ +IL++R L K+  TY ++LP  INKRT  +HT ++ A T
Sbjct: 598 QYVTSEEVLQSLRA-KHPIVADILDYRGLKKLLGTYVEALPKLINKRTGHIHTSFNQALT 656

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++++ G++IR+ F+        SADYSQIELRI+AH++    + 
Sbjct: 657 ATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMI 716

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH   AA+I+  +I  V+ + R+ AK  NF IIYGI+ + LA ++ I   EA
Sbjct: 717 EAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTYGLAQRMEIDNREA 776

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I+ YF  FP +  Y+E+ K   R+ GY ET+FGRR +  +I S   ++R   ER AI
Sbjct: 777 RELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGRRRYLPDITSKNGTVRGFAERNAI 836

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGS ADI + AMI + +  +   + +KM+LQ+HDEL F V  +E     +I++  M
Sbjct: 837 NAPIQGSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFSVYPDEKERVEKIVLEEM 896

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           + A      L+VPL  +     NW E
Sbjct: 897 QGA----YQLQVPLIADAGWGKNWLE 918


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 336/990 (33%), Positives = 540/990 (54%), Gaps = 59/990 (5%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFLVD  + I++ +YA    P+  R  +G+  + + GF     K L++ +K        V
Sbjct: 4   LFLVDAYALIFKYYYAFLGRPM--RNREGMNTSVVFGFV----KFLRDIQKRERPDLLGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR +I+P+YKANR + PE +L  +P V+    A  IP +E+ G+EADD+I T
Sbjct: 58  AFDPKGGSFRRDIFPEYKANRSETPEDILLSIPYVKRVLDAMCIPILEVAGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178
            +    + G+ V +++ DKD  QLV     +Y     E     +D E + +K+GI  P+ 
Sbjct: 118 LSQKGVEAGYDVYMVTPDKDYGQLVRDNCRIYKQRGAEGSIEIVDREAIREKYGIDDPQL 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  + AL GD+ DNIPG+PGIG K A  L++E+G +ENIL N  +I  K+  E I  +A+
Sbjct: 178 VRDILALWGDASDNIPGVPGIGEKIACKLVREWGTVENILENVGKIPGKQ-GEKIAGWAD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             RL+++L  +  DVPI    E L + D +  +L      L+F   +N +      + A 
Sbjct: 237 NLRLAKRLTTICLDVPIPFREEDLTVCDPHIDQLRGIFAELDFKAFMNDL-----TNLAP 291

Query: 299 IEPVVLDINTTENKGIA---IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            EP+           +A                 Q +   D    + + Q      L+  
Sbjct: 292 AEPLPEGPRQEAQTQLAEMARAKSAAAKKAALAGQGNLFGDPVVPLPAAQEVPVAELQAE 351

Query: 356 QKLSQYPINNDS---YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            +  Q+     +   YT +     +++ V  +       F   T   D F+ + + ++++
Sbjct: 352 AEAIQFRTAQTTPHEYTLVETAAQLREVVAAVGRYPEFCFDTETTGFDIFNDRIVGLSLA 411

Query: 413 TLDQKDDTSFKVETI-FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                    FK   + F++           K+T   E    ++  FE+E   KIG NIK+
Sbjct: 412 V------EPFKAWYVPFLE-----------KDT--PEYAEIVRPLFEDEKIAKIGQNIKF 452

Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSS 527
           D +VL R GI++RG   D M++ Y+LD   S H++ ++A+K+L+Y   EI   +      
Sbjct: 453 DLMVLRRLGITIRGRMYDTMILHYLLDP-ESRHNMNALAEKYLNYKPIEIETLIGKGSKQ 511

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           + +D ++  +V+E+A E+++V LQL   L P +    L H+Y  +++PMI V++ +E+ G
Sbjct: 512 LTMDLVNVERVKEYAAEDADVTLQLKQALYPMIEQIGLQHLYFEIEEPMIAVLADIEMAG 571

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK-T 645
           ++ID + L   + E+++ L  LE  I   +GE   N++S +QLG++LF K++     K T
Sbjct: 572 MRIDSEALAVYAVELNRKLAELEAAIRTEAGEPNLNINSARQLGEVLFGKMRIAEKPKMT 631

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KT Q+  T +D  Q+    + I+  ILE+R + K+ STY ++LP  +N+ T R+HT ++ 
Sbjct: 632 KTKQF-CTDEDYLQLFARKHRIVDLILEYRGVKKLLSTYVEALPQLVNRSTGRIHTSFNQ 690

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKI 764
           A T TGRL+S  PNLQNIP++ D+G++IR+AFI S     L+SADYSQ+ELR++AH++  
Sbjct: 691 AVTATGRLSSTNPNLQNIPVRDDMGRRIRKAFIPSDDDHLLLSADYSQVELRLMAHLSGD 750

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   FE+  DIH   AA++F   +++V+ + RR AKT NF IIYGIS F L+ +L IP
Sbjct: 751 ESLIAAFEHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQRLEIP 810

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA + I  YF  +PG+ +Y++      ++ G+V TIFGRR + ++I S  +  R + E
Sbjct: 811 RKEAKEIIDGYFASYPGVKKYMDNVVEKAKEEGFVSTIFGRRRYLNDIASHNAIARGLAE 870

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+NAPIQGSAADI + AMI+VH+      + ++++LQ+HDELV ++   E    + I+
Sbjct: 871 RNAVNAPIQGSAADIMKIAMINVHRRFAAEGIRSRVILQVHDELVVDMLRSEQERVTAIV 930

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ME A      L+V L  +  V  NW E
Sbjct: 931 TECMESAA----QLKVRLIADAGVGGNWLE 956


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 332/986 (33%), Positives = 528/986 (53%), Gaps = 85/986 (8%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N LFL+D  + I+R++YA    P ++ K  GL  +AI GF N L +++   +     ++ 
Sbjct: 2   NKLFLLDAYALIFRSYYALIRAPRINSK--GLNTSAILGFVNTLNEIITKEK----PTYI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E +P YKA R + PE +   +P ++   +AF IP ++++GFEADD+I
Sbjct: 56  GVAFDL-GKTFRHEAFPPYKAQRQETPEDITLSVPFIKDILRAFHIPILQVEGFEADDVI 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PE 177
            T    A KEG A  +++ DKD  QL+     +Y        DI   + + +K+GI  P 
Sbjct: 115 GTLATKAGKEGIATYMLTPDKDYGQLIRENVFMYRPRHGGGYDIIGEQEIAEKYGISTPA 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GDS DN PG PG+G KTA  L+ E+G+++ ++ +  ++K  K RE +    
Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTAVKLINEFGSIDELISHTDKLK-GKMREKVEGAI 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++S+ L  +RTDVP+ + L+ L L+  +  +L      LEF  L N++         
Sbjct: 234 EDIKMSKFLATIRTDVPVELNLDELQLQAPDEQKLSEIFAELEFKSLANKI--------- 284

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   +N TE K   + +E+D           +++   S++ SE        E L+ 
Sbjct: 285 --------LNKTEQKQKLVNSELD---------LFAVNPHESQVASENAS----FESLKT 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +         Y  I N ++  +      T    S    T + +A  ++ + +  +  + K
Sbjct: 324 IKH------DYQLIDNQEEAHRICDFFRTKRILSLDTETTSTNAIDAELVGLCFAVEEHK 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
                          V    D        +E L Y+  F   +E+   LKIG N+KYD  
Sbjct: 378 A------------FYVAIPNDR-------EEALQYVNIFKPVYEDPSILKIGQNLKYDYE 418

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIP 529
           VL  YG+++ G   D ML  YV+      H++  +A+  L Y      E++  R K    
Sbjct: 419 VLKNYGVTLGGKMFDTMLAHYVIQP-ELHHNMDYMAETLLHYKTIHIDELIGPRGKHQKS 477

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +    V E+A E++++ LQL  +L PKL      +++  ++ P++ V++ ME+ G++
Sbjct: 478 MRDLDPKDVYEYAAEDADITLQLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVR 537

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTG 648
           +D D L   S   ++ +  LE+ IY+ +GE FN+SSPKQ+GDILF K++      KTKTG
Sbjct: 538 LDTDALHDTSMIFTERMNRLEQQIYEKAGETFNISSPKQVGDILFGKMQIMEKPKKTKTG 597

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T  + L+ +    +PI+ +IL++R L K+  TY ++LP  INKRT  +HT ++ A T
Sbjct: 598 QYVTNEEVLQSLRA-KHPIVADILDYRGLKKLLGTYVEALPKLINKRTGHIHTSFNQALT 656

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++++ G++IR+ F+        SADYSQIELRI+AH++    + 
Sbjct: 657 ATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMI 716

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH   AA+I+  +I  V+ + R+ AK  NF IIYGI+ + LA ++ I   EA
Sbjct: 717 EAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTYGLAQRMEIDNREA 776

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I+ YF  FP +  Y+E+ K   R+ GY ET+FGRR +  +I S   ++R   ER AI
Sbjct: 777 RELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGRRRYLPDITSKNGTVRGFAERNAI 836

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGS ADI + AMI + +      + +KM+LQ+HDEL F V  +E     +I++  M
Sbjct: 837 NAPIQGSEADIIKIAMIRIWQRFRAENIRSKMILQVHDELNFSVYPDEKERVEKIVLEEM 896

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           + A      L+VPL  +     NW E
Sbjct: 897 QGA----YQLQVPLIADAGWGKNWLE 918


>gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429]
 gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429]
          Length = 890

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 348/992 (35%), Positives = 551/992 (55%), Gaps = 128/992 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQ---NSRKESIASHFA 62
            LFL DG+  +YRAFYA     +   G+  NA+ G   ML K L+   N  K++ A    
Sbjct: 3   ELFLFDGTGLVYRAFYAIDQFLKTSTGMHTNALYGIAKMLIKFLKEHVNMEKDACA---- 58

Query: 63  VIFDYPAVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            I D    +  R EI  DYK+NRP+ P+++L QLP +     AFG+  +++ G+EADDII
Sbjct: 59  FILDSKGGSKKRKEILKDYKSNRPETPDLILEQLPYIEEFVDAFGVKVLKLLGYEADDII 118

Query: 122 ATYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKI------DIEHVIKKW 172
           AT   IA++   A   V II+ DKDL+QLV     ++    E  I      D + V +K+
Sbjct: 119 AT---IAKRFCNAFEKVNIITGDKDLLQLVDEKVYVWRI--ERGITELVLYDRKKVFEKY 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ PE+     +L GD IDNIPG+ GIG KTA  LL++YG ++ +L N   + +K ++  
Sbjct: 174 GVFPEQFGDYLSLVGDQIDNIPGVKGIGKKTAVSLLKKYGTIDEVLKNKKLLTEKLQK-- 231

Query: 233 ILEYA-ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           +LE A E+   SR+LV L  DVP+ + +E LI +  +  +L+  LK  EF+ +I      
Sbjct: 232 LLENATESLEKSRQLVQLIYDVPLDVNIEDLIYKGYDSKKLLVVLKKYEFSSII------ 285

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                               K + ++ E ++  TI              +NSE+   KL 
Sbjct: 286 --------------------KELGLKEEFEKKYTI--------------VNSEKELSKL- 310

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            +R+ ++  + I+ +                             T ++D F +K + ++I
Sbjct: 311 RKRIDEVKTFSIDTE-----------------------------TTSLDPFSAKLVGVSI 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIK 470
           ST +         E  +I +S H S+     N LTKEI L +LK+  E E +  +G N+K
Sbjct: 342 STNEG--------EAYYIPIS-HVSE-----NNLTKEIVLKFLKEILECERYNIVGQNLK 387

Query: 471 YDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           +D  V    GI   +  F D M+ +Y+++     +++  +A K+L Y      +   +++
Sbjct: 388 FDYKVFMVNGIEPQIPHF-DTMVAAYLINPEERRYNLEELALKYLGYKMISFEELVDNNM 446

Query: 529 PI-----DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           P+       IS  +  E++ E+ ++  +L+  L  K I E +  ++  ++ P+I+V++QM
Sbjct: 447 PLFGNDFSFISIEKAAEYSCEDVDITFRLYSYL-SKYIGE-MKELFYNIEMPLINVLAQM 504

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E+ G+  D D LK++S    + +  LEE I+++SGE+FN++S KQ+ +ILF KLK P   
Sbjct: 505 ELNGVYFDVDYLKELSKRYEEEMKKLEEKIFEISGEQFNINSSKQVAEILFEKLKLPIVK 564

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT TG+  T A+ LE++   D  I + ILE+R+  K+KSTY DS+P+ +N  T RVH+ +
Sbjct: 565 KTATGRNSTNAEVLEEL-AKDYEIARLILEYRKFQKLKSTYVDSIPSSVNITTNRVHSSF 623

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHI 761
               T TGRL+S  PNLQN+P +++ G++IR A + P  +   ++ ADYSQIELR+LAH+
Sbjct: 624 HQTGTSTGRLSSSAPNLQNLPTRSEEGKEIRHA-VKPQFENWYIVGADYSQIELRVLAHM 682

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L   FEN  DIH + A++IF V+   V+  MRR  K INF+IIYGISP+ L+ ++
Sbjct: 683 SEDEKLLDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMINFAIIYGISPYGLSRRI 742

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            +  +E    I  YF  + G+ E+I+KT +F ++NG+V+T+FGR+    ++     ++  
Sbjct: 743 GLNVNETKKIIDNYFKYYQGVFEFIKKTIDFAKKNGFVKTLFGRKRFIPQLKLKNKNLIQ 802

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER AIN P+QG+AADI + AM+ VH  L+ + L TK++LQ+HDELVFEVP +E+    
Sbjct: 803 EGERIAINTPVQGTAADIIKIAMVKVHNELKRNSLKTKLILQVHDELVFEVPFDELQIVK 862

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +II   ME A    + L+VPLKV++     W+
Sbjct: 863 EIIKDKMENA----VKLKVPLKVDLYEGREWE 890


>gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168]
 gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
          Length = 926

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 345/992 (34%), Positives = 533/992 (53%), Gaps = 96/992 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++ L+++D    IYR++YA    PL  +  DG  V+A+ GF      +L + +   IA+ 
Sbjct: 8   DSTLYILDSYGLIYRSYYAFINRPLTDK--DGKNVSAVFGFFRNFKAVLDHYKPRYIAAA 65

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F    D    TFR+E+Y DYKA R K PE L  Q+P++     A GIP +   GFEADD+
Sbjct: 66  F----DSRKATFRHEMYADYKATRQKTPEDLHAQVPVIEEILTALGIPVLRCDGFEADDV 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPE 177
           IAT   +   E     I+S DKDLMQLV+ TT +    K    +I   + V  +WG+ PE
Sbjct: 122 IATIASVCGAENRCCRILSADKDLMQLVNDTTQILKPDKNGGWEIVGKDGVKAEWGVEPE 181

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            M+ L +L GDS DN+PG+ G+G KTA  LL EYG+L+ I  +A  I      + I    
Sbjct: 182 LMLDLLSLIGDSSDNVPGVSGVGIKTALKLLDEYGSLDGIFAHADDISGAVGNK-IRAGK 240

Query: 238 ETARLSRKLVMLRTDVPI--TIP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           + A  S+ L+ LR DVP+   +P    + L+     RL+       F   +  VA  Y  
Sbjct: 241 DAAYFSKSLIALRYDVPVDTCVPSFGTVSLDYEAASRLL-------FRYGVPAVAKQY-- 291

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            A+   P   +    ++KG                        T  I     P +   E 
Sbjct: 292 -ASVPLPAGSETEAIQSKG-----------------------PTGLI-----PDEPVFEE 322

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKL---ETIGSASFKIITDTMDAFHSKPIAIAI 411
           L K      N   Y  + +   +  ++ ++   E I  A+F   TD++D  H++ +  ++
Sbjct: 323 LTK------NTGDYMAVTSIAVLASYIDEILASEPI-EAAFDCETDSLDRIHTRIVGFSL 375

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY--LKKFFENEHFLKIGHNI 469
           S   ++  T      I++ LSV    D+    TL ++  ++  L++ F         HN 
Sbjct: 376 S---RRAGTG-----IYVPLSV---PDALLTQTLIEKQDAFVQLERLFSVPACTLAMHNG 424

Query: 470 KYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-----YTRKEILK 522
           K+D  VL   G++       D M+ +++LD  RS++ + ++A   L      YT      
Sbjct: 425 KFDYEVLRSNGLAEPRCRIADTMVAAWLLDPDRSAYSLEALAADKLGLETIPYTDVVPKG 484

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           S  + IP++     Q   +A E++++  QL+ L  P+L   KL  ++  L+ P++ ++++
Sbjct: 485 STFADIPLE-----QAVPYAAEDADLTWQLYRLFLPRLAAAKLGDLFWNLEMPVLPILAE 539

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME+ GI I++  L     E++  +  +   IY+L G +FN++S KQL D+LF + K P G
Sbjct: 540 MELDGIHIEKSELISYGEELTAEIERIRREIYELVGHEFNVASTKQLQDVLFEERKLPPG 599

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T    LE +   D P+ + IL++R  +K+ S+Y D+LP  ++    R+HT 
Sbjct: 600 KKTKTG-YSTDTGVLETLAALD-PVPRKILDYRLKTKLFSSYVDTLPLMVDG-NDRIHTS 656

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           +    T TGRL+S EPNLQNIP++ + G++IR AF + P  +LISADYSQIEL ILAH++
Sbjct: 657 FIQTGTATGRLSSREPNLQNIPVRDEDGRRIRLAFTAEPGCQLISADYSQIELVILAHLS 716

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L   F    D+HR  AA IFGV  + V+P MRR AKTINF ++YG+S FRLA  L 
Sbjct: 717 GDPNLCAAFSGGTDVHRATAALIFGVQPDAVTPDMRRTAKTINFGVMYGMSAFRLAGALG 776

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR++AA++I+ YF  + G+  ++ +  N  +Q+G+VETIFGRR +   INS     ++ 
Sbjct: 777 IPRTQAAEFIEAYFKTYAGVRNFMNEMVNAAQQSGFVETIFGRRRYIRAINSSSKIEKSG 836

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER A+N PIQGSAADI ++AMI V  +L+      ++LLQ+HDEL+ E P+E     + 
Sbjct: 837 AERVAVNTPIQGSAADIVKKAMIDVAAALKKTGSPARLLLQVHDELILECPQESAAETAS 896

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +I  +ME      ++LRVPLKV++++   W +
Sbjct: 897 LIKQTMENV----VSLRVPLKVSVEIGPRWGD 924


>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
          Length = 944

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 348/994 (35%), Positives = 549/994 (55%), Gaps = 81/994 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA +A    P  + K  GL  +A+ GF N+L ++L+  +     +H A 
Sbjct: 4   LFLLDSMALIYRAHFAFINNPRQTSK--GLDTSAVLGFINVLLEILKKEK----PTHIAA 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+  Y  YKANRP  PE +   +P +++  +A  IP ++++G+EADD+I T
Sbjct: 58  AFDLSAPTFRHIEYTAYKANRPTQPEGITAGIPYIKMLLKAMNIPILQLEGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-----DTVKEEKIDIEHVIKKWGIPP-E 177
                      + ++++DKD  QL+                 E   +   ++K+GI   E
Sbjct: 118 IAKKLSAPDLEIYMMTSDKDYCQLLEENRIFMFRPASKFSPNEVWGVSKALEKFGIKRVE 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GD++DNIPG+PG+G KTA  LL+EY N+ENI+ N   +K  K +E++  ++
Sbjct: 178 QVIDMLGLQGDAVDNIPGLPGVGEKTAQKLLEEYDNIENIIANVQNLK-GKLKESVELHS 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS+KL  +  +VP+   L+  +L++ N   L   L  LEF  +  R+        A
Sbjct: 237 DKALLSKKLATIDINVPLVFSLDDFLLQEPNKEDLSDLLDELEFKTIKTRIL------GA 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ- 356
           + E       T +             +T  T+Q ++LSD T      +T     ++ +  
Sbjct: 291 SEEEKAAKKPTKKAPATGQMDMFGNVSTPNTTQNTTLSDDT------ETTSTYHIDNINT 344

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           KL QY +       I   +  Q  +Q LE      F   T ++ A  ++ + +A+S    
Sbjct: 345 KLHQYHL-------IDTPEKRQSLIQFLENQTEFCFDTETTSLVAIEAELVGLALS---- 393

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                +  E  ++      +Q        T+ IL   +   E+E+  KIG N+KYD  VL
Sbjct: 394 ----YYAGEAYYVPFPADKAQ--------TQAILEEFRGVLESENIKKIGQNLKYDITVL 441

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI--LKSRKSS--IPID 531
            +Y I ++G   D ML SY+LD   + H + ++A+K+L+Y+  +I  L  +KS+      
Sbjct: 442 KKYNIEIKGECFDTMLASYLLDPD-NRHSMDAMAEKYLNYSPVKIDTLIGKKSTKNTTQG 500

Query: 532 KISDSQVQ---EHAIENSNVILQLWLLLRPKL----IVEKLLHVYERLDKPMIDVVSQME 584
            + D +VQ   E+A E++++ LQL     PK+    I+EKL   ++ ++ P++ V++ +E
Sbjct: 501 NMRDVEVQKVVEYAGEDADITLQLKEYFAPKVAERPILEKL---FKTVEMPLMHVLAHIE 557

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGA 643
            TG++ID   L + S  + K++  LE+ IY LSGE FN++SP+QLG +LF KL    +  
Sbjct: 558 ATGVRIDTQALAESSEILDKDIKILEQTIYTLSGEVFNIASPQQLGKVLFEKLNLMKNPP 617

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTGQ+ T  + L ++   DN I++ ILE R+L K+KSTY D+LP  ++K   R+HT Y
Sbjct: 618 KTKTGQYATGEEVLTKLT--DNEIVQQILEIRELQKLKSTYVDALPALVSKIDGRLHTSY 675

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAH 760
           + A   TGRL+S  PNLQNIPIKT  G++IR+AFI  PT     ++SADYSQIELR++A 
Sbjct: 676 NQAVVATGRLSSTNPNLQNIPIKTAKGREIRKAFI--PTDDDFVILSADYSQIELRLIAA 733

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
            ++   + + F N  DIH   A++I+ ++I++V+  MRR AKT NF+I+YG S F L+ Q
Sbjct: 734 FSQDETMMEAFNNGTDIHTATASKIYKIDIQEVTADMRRMAKTANFAILYGSSAFNLSAQ 793

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L+I  SEA   I  Y+  F  + ++ ++     RQ  Y ET  GRR +   IN   + + 
Sbjct: 794 LKISTSEAKKLIDSYYGEFSAVKKFKDEMIQKARQFEYAETFLGRRRYLAGING-GAMVS 852

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+N+PIQG+AAD+ + AMI +H+ +   K+ +KM+LQ+HDELVF+  + EI   
Sbjct: 853 GQAERNAVNSPIQGTAADMIKLAMIDIHRFMMREKMQSKMILQVHDELVFDAHKSEIDFL 912

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++  ME A L    L V + V   V  NW E
Sbjct: 913 KENVIKLMENALL----LPVRIGVEAGVGKNWLE 942


>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
          Length = 949

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 343/987 (34%), Positives = 538/987 (54%), Gaps = 53/987 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L    K+  
Sbjct: 1   MDSSNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRVLKKEV 293

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                       + T ++    +    +    I+   F++ +      N     +K  LE
Sbjct: 294 SGNGITSTPKSKVATGKSAPSPLPLFPEEGGGIQGDLFANFTP-----NEPNEAKKSNLE 348

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L+  S+      +Y  I   K  ++ +QKL T    S    T   +   ++ + ++ S 
Sbjct: 349 TLESQSR------NYQLIDTEKKRREIIQKLLTSKILSLDTETTETEPMDAELVGMSFSI 402

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         E  ++   V + +D   K      I+   +  FENE+ LK+G NIKYD 
Sbjct: 403 AEN--------EAFYV--PVPSDRDEALK------IVKEFRPVFENENSLKVGQNIKYDM 446

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           +VL  YG  ++G   D M+  YVL      H +  +A+ +L Y      E++  + K+  
Sbjct: 447 IVLQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    V  +A E++++ L+L  +L  +L       ++  ++ P++ V+  +E  G+
Sbjct: 506 NMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D + L+Q SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK    AK TKT
Sbjct: 566 LLDTEALQQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKT 625

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   
Sbjct: 626 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFNQTV 684

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +
Sbjct: 685 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R E
Sbjct: 745 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 804

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER A
Sbjct: 805 AKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 864

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  
Sbjct: 865 INAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 924

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           MEKA      + VPLK +     NW E
Sbjct: 925 MEKAY----RMHVPLKADCGWGKNWLE 947


>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 331/993 (33%), Positives = 520/993 (52%), Gaps = 112/993 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDG    YRA++A P       G P + + GF +ML ++L +   +    +  
Sbjct: 6   RRPRLVLVDGHGLAYRAYHALPPTLATSAGEPTHVVFGFASMLLEVLNDFEPD----YVI 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    +FR ++Y +YKA+RP+ P+ L  QL  +R    A GIP +  +G+EADD+I 
Sbjct: 62  VCFDT-GRSFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPE 177
           T    A   G  V I++ D DL+QLV     +    ++        D + VI+++G PPE
Sbjct: 121 TLAARATANGLEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++   +AL GD  DNIPG+PGIG KTA  L+Q + +LE +L    RI             
Sbjct: 181 RLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEML---DRI------------- 224

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                                      ++   PRL   L+A   T L +R   T      
Sbjct: 225 ---------------------------DEVEPPRLREALRAARETVLASRRLAT------ 251

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTI---KTSQFSSLSDQTSKINSEQTPQKLFLER 354
               +V D + T +   A   + DR+  +   +  +F SL          + PQ      
Sbjct: 252 ----IVRDADITLDLEQARFGDFDRERVLQLFRELEFRSLV--------PRLPQPR---- 295

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            Q + +          ++   D+   V+ LET  + +  + T  +   ++  + IA++T 
Sbjct: 296 -QPVRKTAAPASQRRAVLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALAT- 353

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
               D S+     ++ L  HT+ D+       +++L  L  F  +    +  H+ KYD L
Sbjct: 354 --APDRSY-----YVPLG-HTTGDT---QLDIEQVLQRLAPFLRHPEKQRYAHHGKYDAL 402

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPI 530
           VL R G      + D M+ +Y+L  G ++  +  +A   L +  +EI   +   K  + +
Sbjct: 403 VLERAGFPRPHIDFDTMIAAYLL--GENAVGLKELAFTKLGWEMEEITELIGRGKKQLTM 460

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D+   ++V ++A  +     +L  +LRP+L     L ++  ++ P+IDV+  ME  GI I
Sbjct: 461 DRAEIARVTQYACADVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAI 520

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L+Q+S  +   L +LE  IY+L+G   N++SP+QL  +LF +L  P G +TKTG +
Sbjct: 521 DVPYLEQLSIMLDGQLHALERRIYELAGHPLNINSPQQLSTLLFDELGLPRGKRTKTG-Y 579

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             + + LE +    +PI++ ILE+RQL K+KSTY D+LP  ++ +T RVHT +      T
Sbjct: 580 SVSQEVLENLR-DTHPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAAT 638

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP--PTKK-------LISADYSQIELRILAHI 761
           GRL+S +PNLQNIP + +LG  +RRAFI+   P  +       L+S DYSQIELR++AH 
Sbjct: 639 GRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHF 698

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L + F    DIH   A+E+FGV ++ V+P+MRR AK +NF I+YG+  + LA   
Sbjct: 699 SQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDT 758

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            + R +A  +I+ YF RFPG+  Y+E+T+    + GYVET+FGRR +  EI S   + R 
Sbjct: 759 GMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQ 818

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+N P+QG+AADI + AMI+VH+ L +  L ++MLLQ+HDELV EVPE E+ T +
Sbjct: 819 AAERMAVNMPLQGTAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTT 878

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +++   M +     + L VPL+V+ K   NW +
Sbjct: 879 ELVTTRMSRV----VELSVPLEVDAKAGPNWAD 907


>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
 gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
 gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
          Length = 949

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 344/987 (34%), Positives = 540/987 (54%), Gaps = 53/987 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MDSSNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRVLKKEV 293

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                       + T ++    +    +    I+   F++ +      N     +K  LE
Sbjct: 294 SGNGITSTPKSKVATGKSAPSPLPLFPEEGGGIQGDLFANFTP-----NEPNEAKKSNLE 348

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L+  S+      +Y  I   K  ++ +QKL T    S    T   +   ++ + ++ S 
Sbjct: 349 TLESQSR------NYQLIDTEKKRREIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSI 402

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         E  ++   V + +D   K      I+   +  FENE+ LK+G NIKYD 
Sbjct: 403 AEN--------EAFYV--PVPSDRDEALK------IVKEFRPVFENENSLKVGQNIKYDM 446

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           +VL  YG  ++G   D M+  YVL      H +  +A+ +L Y      E++  + K+  
Sbjct: 447 IVLQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    V  +A E++++ L+L  +L  +L       ++  ++ P++ V+  +E  G+
Sbjct: 506 NMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D + L+Q SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK    AK TKT
Sbjct: 566 LLDTEALQQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKT 625

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   
Sbjct: 626 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFNQTV 684

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +
Sbjct: 685 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R E
Sbjct: 745 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 804

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER A
Sbjct: 805 AKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 864

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  
Sbjct: 865 INAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 924

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           MEKA      + VPLK +     NW E
Sbjct: 925 MEKAY----RMHVPLKADCGWGKNWLE 947


>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
 gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
          Length = 864

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 351/977 (35%), Positives = 528/977 (54%), Gaps = 127/977 (12%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           + L+DG+S I+RAF+A  PL++ K  G+  NA+ GF NML ++L+  R + IA    V F
Sbjct: 4   IMLIDGNSLIHRAFHALPPLMTSK--GVHTNAVYGFMNMLMRILKEQRPDYIA----VAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  + TFR++ + +YKANR + PE L+ Q  +++   +A  I  IEI G+EADDI+ + +
Sbjct: 58  DKKSPTFRHQEFIEYKANRVRTPEELVGQFDVLKQILKAMNIRYIEIDGYEADDILGSLS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE+ G    I++ DKD +QLVSP   +  T K     E  D + + +++GIPP+ +  
Sbjct: 118 KKAEEAGIFTLIVTGDKDTLQLVSPMVHVMLTRKGISEMEIYDPDKMAERFGIPPQAIPD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GDS DNIPGIPG+G KTA  LLQEYG+LENIL NA ++K K  RENI        
Sbjct: 178 MKGLMGDSSDNIPGIPGVGEKTALKLLQEYGSLENILENAEKLKGK-LRENI-------- 228

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                             LK  E  ++  R+AT        +  
Sbjct: 229 ----------------------------------LKYGEQARVSKRLATI-------VRD 247

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V LD++  E   IA+ TE D    +K   F  L   T  IN    PQ+   E  +KLS  
Sbjct: 248 VELDVDLEE---IAL-TEPDYAELLKI--FRELEFYTL-INKLPRPQEK-EEHPEKLS-- 297

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    +++     + ++++   G  + ++ TD  +   +  I I  S         
Sbjct: 298 -------CTVIDYSGFGRMMERVRAAGVLAVELKTDGRNPMDAHLIGIGFS--------P 342

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
            + E  ++   V            + E+ S LK    +    KI H+ KY + VL + G+
Sbjct: 343 SRGEGFYVPAEVLEK---------SPEVKSDLKAVLADPGITKIIHDGKYARTVLAKIGM 393

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK-SRKSS--IPIDKISDSQV 538
                 D ML +Y+LD  +  +D+ S+    L    K      R+ +  IP+ +I   ++
Sbjct: 394 DFVYNFDTMLAAYLLDPSKPRYDLESVVFDNLGVELKGTEDPGRRVAYLIPLKEIMSEKL 453

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           +  A+E                       ++  ++ P+  V+S ME+TGI++D + L+ +
Sbjct: 454 KSCAME----------------------ELFFGVEMPLSFVLSDMEMTGIKVDPEKLESL 491

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E  + L  L   IY L+G +FN++SPKQLG++LF KL  P   K K+G + T A+ LE
Sbjct: 492 SREFGEKLEELTGEIYRLAGVEFNINSPKQLGEVLFEKLNLPVIKKKKSG-YSTDAEVLE 550

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++    +P+++ ILE+R L K+KSTYAD L   ++K T R+H+ ++   T TGR++S EP
Sbjct: 551 KLKNA-HPVVEKILEYRFLMKMKSTYADGLLALVDKSTYRIHSNFNQTITATGRISSTEP 609

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP+KTD+G+KIR  F++  P   L+S DYSQIELR+LAH++    L + F    DI
Sbjct: 610 NLQNIPVKTDIGRKIRGVFVAESPEHVLLSGDYSQIELRVLAHLSGDEGLIEAFIKGEDI 669

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+E+FGV  E+V+P +R  AK +NF IIYGIS + LA  L I  +EA +YI+ Y +
Sbjct: 670 HTRTASEVFGVPPEQVTPLLRDRAKAVNFGIIYGISDYGLAQNLGISTAEAREYIENYLN 729

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P + +YI +T    R +GYV TI  RR +  EINS   ++R+  ER A+N PIQGSAA
Sbjct: 730 RYPKVRDYIRETIRNARMSGYVTTILNRRRYIPEINSRNYNLRSFAERVAMNTPIQGSAA 789

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ +     ++ L  KML+Q+HDEL+F+VP+ E+     I+   ME A    I 
Sbjct: 790 DIIKVAMVKITNHFREYGLKAKMLIQVHDELIFDVPKSELEVVKNIVKDDMENA----IP 845

Query: 958 LRVPLKVNIKVSNNWQE 974
           L+VPL V+ K    W+E
Sbjct: 846 LKVPLVVDFKEGYTWEE 862


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 351/989 (35%), Positives = 530/989 (53%), Gaps = 115/989 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           +L+L+DGS   YRAF+A        DGLP NAI G   ML KLL+   K+   S    + 
Sbjct: 3   NLYLIDGSGIAYRAFFALGDWMSTSDGLPTNAIYGVARMLLKLLKEYVKKGEDS-IIFVM 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E+   YKA RP+ PE  + Q+P +    +  GI  + +  +EADD+IAT  
Sbjct: 62  DKKTTTYRHELLESYKAQRPETPEKYIQQIPYIYEMVEKLGIKLVAMDNYEADDVIATIV 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
              ++    V II++DKD+MQLV        P   + + VK    D + V KK G+PPEK
Sbjct: 122 SKKKRNYDNVYIITSDKDMMQLVKDNVYILRPEQGITEMVK---YDAQQVEKKMGVPPEK 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  L AL GDS DNIPG+ GIG KTA  LLQ+Y N++++  +   IK   + + +    E
Sbjct: 179 IADLLALMGDSSDNIPGVKGIGIKTAQKLLQDYDNIDDLYQHLDEIKGSTKNK-LKNEKE 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILED----CNGPR--LISFLKALEFTKLINRVATTY 292
           TA LS+KLV L  D PI       I ED      G R  L  FLK L+F  ++       
Sbjct: 238 TAYLSKKLVQLMVDAPI-----EEIFEDKEIIYQGFRNNLRDFLKKLDFNSILKE----- 287

Query: 293 DCDAANIEPVVLDI--NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                      LD+   TT +  +A ET+ ++             D ++K          
Sbjct: 288 -----------LDMPDTTTNSTKVAAETKAEK------------KDYSTK---------- 314

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                 K  +Y           N +D ++ ++ LE     SF + T ++D + +  + IA
Sbjct: 315 -----GKYYEY-----------NAQDYKELLKILEKYEIISFDLETSSLDPYQADIVGIA 358

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           +S            E  F  L ++  +D   +  +TKEI+  L     N+    IG N+K
Sbjct: 359 LSCK--------PFEGYF--LYLYKEKD---RWEITKEIVDLL----NNKKV--IGQNLK 399

Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
           YD  VL   GI +     D M+ +Y+L+      ++  +A+++L Y     KE++     
Sbjct: 400 YDITVLKVNGIELSKVHFDSMIAAYLLNPDSRRFNMDDLAKEYLDYKTIKYKEVMGKDIK 459

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            + +  I   +V E+A E++++  +L+ +L+PKL   +L  ++E+++   I+V+S+ME+ 
Sbjct: 460 LLTLGDIDKKRVVEYAGEDADIAYRLFEVLKPKLEEFELFELFEKIEMSTINVLSEMEMN 519

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+  D   L+++  E +K L SL   +  + G  FN +SPKQ+G++LF  L      KTK
Sbjct: 520 GVYFDLKELQKLEEEYNKKLSSLMYEMKKIVGYDFNPNSPKQVGELLFENLGLKGKRKTK 579

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +G + T A  LE +   ++PII+ +LE+R+  K+ STY  ++P  +NK+T RVHT ++  
Sbjct: 580 SGSYSTDADSLEALR-DEHPIIEKLLEYRKYQKLLSTYIIAIPKLVNKKTGRVHTSFNQT 638

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKIT 765
            T TGRL+S EPNLQN+PI+ + G++IR    +      L+SADYSQIELR+LAH+    
Sbjct: 639 GTATGRLSSSEPNLQNLPIREEDGERIRSTVKAQKDDYVLLSADYSQIELRVLAHLTNDE 698

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N  DIH + AA IFGV I+ V   MRR  K +NFS++YG SP+ LA  L+IP 
Sbjct: 699 TLINAFNNGEDIHALTAAAIFGVKIDDVDYNMRRVGKVVNFSLVYGSSPYGLAENLKIPV 758

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            +A D++ RYF  +  + EY E +     Q GYVETIFGR+     I + KS ++    R
Sbjct: 759 EDAKDFMNRYFKTYQKVKEYQESSLKIATQKGYVETIFGRKRFLKNIKTGKSELK----R 814

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
             IN PIQGSAADI + AMI+++K L       K++LQ+HDE+V E+PE+ +    +++ 
Sbjct: 815 IVINTPIQGSAADIMKLAMINLYKKLPKE---AKLILQVHDEVVIELPEKIVEETKKMVQ 871

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME A    + L +PLKV+I V  NWQ+
Sbjct: 872 DCMENA----VKLNIPLKVDISVGKNWQK 896


>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
          Length = 949

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 342/987 (34%), Positives = 537/987 (54%), Gaps = 53/987 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MESDNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR+E +  YKA R + PE +   +P+++    A+ IP +E+ G+EA
Sbjct: 55  PSHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLV+    +Y    T   E + IE V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++ DVPI + ++ L+ E  +   L    + LEF  LI+RV    +
Sbjct: 234 ETNKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKEN 293

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                         T ++    +    +    I+   F++ +      N     +K  LE
Sbjct: 294 SAGGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTG-----NEAGEAKKSNLE 348

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L+ L      N  Y  I   K   + +QKL T    S    T   +   ++ + ++ S 
Sbjct: 349 TLETL------NCDYQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSI 402

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + +   +F V        V  +++   K      I++  +  FENE+ LK+G NIKYD 
Sbjct: 403 TENQ---AFYV-------PVPDNREEALK------IVNEFRPVFENENSLKVGQNIKYDM 446

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           +VL  YG+ ++G   D M+  YVL      H +  +A+ +L Y      E++  + K+  
Sbjct: 447 IVLENYGVQVKGALFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    +  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+
Sbjct: 506 NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D + LKQ S   +  +  +E+ IY+L+GE FN++SPKQ+G++LF KL+    AK TKT
Sbjct: 566 LLDTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKT 625

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   
Sbjct: 626 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV 684

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +
Sbjct: 685 TSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R E
Sbjct: 745 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 804

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF  +P +  Y+EK+    ++ GYVETIF R+    +INS  + +R   ER A
Sbjct: 805 AKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 864

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  
Sbjct: 865 INAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 924

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A      + VPLK +     NW E
Sbjct: 925 MEHA----YRMHVPLKADCGWGKNWLE 947


>gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6]
 gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
          Length = 949

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 342/987 (34%), Positives = 537/987 (54%), Gaps = 53/987 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MESDNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR+E +  YKA R + PE +   +P+++    A+ IP +E+ G+EA
Sbjct: 55  PSHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLV+    +Y    T   E + IE V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVTNNVFMYRPKHTGGFEVMGIEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++ DVPI + ++ L+ E  +   L    + LEF  LI+RV    +
Sbjct: 234 ETNKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKEN 293

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                         T ++    +    +    I+   F++ +      N     +K  LE
Sbjct: 294 SAGGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTG-----NEAGEAKKSNLE 348

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L+ L      N  Y  I   K   + +QKL T    S    T   +   ++ + ++ S 
Sbjct: 349 TLETL------NCDYQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSI 402

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + +   +F V        V  +++   K      I++  +  FENE+ LK+G NIKYD 
Sbjct: 403 TENQ---AFYV-------PVPDNREEALK------IVNEFRPVFENENSLKVGQNIKYDM 446

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           +VL  YG+ ++G   D M+  YVL      H +  +A+ +L Y      E++  + K+  
Sbjct: 447 IVLENYGVQVKGALFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    +  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+
Sbjct: 506 NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D + LKQ S   +  +  +E+ IY+L+GE FN++SPKQ+G++LF KL+    AK TKT
Sbjct: 566 LLDTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKT 625

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   
Sbjct: 626 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV 684

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +
Sbjct: 685 TSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R E
Sbjct: 745 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 804

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF  +P +  Y+EK+    ++ GYVETIF R+    +INS  + +R   ER A
Sbjct: 805 AKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 864

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  
Sbjct: 865 INAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 924

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A      + VPLK +     NW E
Sbjct: 925 MEHA----YRMHVPLKADCGWGKNWLE 947


>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
 gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
          Length = 949

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 342/987 (34%), Positives = 537/987 (54%), Gaps = 53/987 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MESDNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR+E +  YKA R + PE +   +P+++    A+ IP +E+ G+EA
Sbjct: 55  PSHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLV+    +Y    T   E + IE V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVTNNVFMYRPKHTGGFEVMGIEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++ DVPI + ++ L+ E  +   L    + LEF  LI+RV    +
Sbjct: 234 ETNKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRRIFEELEFRTLIDRVLKKEN 293

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                         T ++    +    +    I+   F++ +      N     +K  LE
Sbjct: 294 SAGGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTG-----NEAGEAKKSNLE 348

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L+ L      N  Y  I   K   + +QKL T    S    T   +   ++ + ++ S 
Sbjct: 349 TLETL------NCDYQLIDTEKKRTEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSI 402

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + +   +F V        V  +++   K      I++  +  FENE+ LK+G NIKYD 
Sbjct: 403 TENQ---AFYV-------PVPDNREEALK------IVNEFRPVFENENSLKVGQNIKYDM 446

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           +VL  YG+ ++G   D M+  YVL      H +  +A+ +L Y      E++  + K+  
Sbjct: 447 IVLENYGVQVKGALFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    +  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+
Sbjct: 506 NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D + LKQ S   +  +  +E+ IY+L+GE FN++SPKQ+G++LF KL+    AK TKT
Sbjct: 566 LLDTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKT 625

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   
Sbjct: 626 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV 684

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +
Sbjct: 685 TSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R E
Sbjct: 745 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 804

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF  +P +  Y+EK+    ++ GYVETIF R+    +INS  + +R   ER A
Sbjct: 805 AKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 864

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  
Sbjct: 865 INAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 924

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A      + VPLK +     NW E
Sbjct: 925 MEHA----YRMHVPLKADCGWGKNWLE 947


>gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
 gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
          Length = 949

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 343/1015 (33%), Positives = 543/1015 (53%), Gaps = 120/1015 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  LFL+D  + I+R +YA    P ++    G+ V+AI GF N L+ +++  R +    H
Sbjct: 9   QKRLFLLDAYALIFRGYYALIKNPRITSS--GMDVSAIMGFTNSLFDVIKRERPD----H 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    + R E Y DYKANR + PE +   +P ++   +A  IP IE +G EADD+
Sbjct: 63  LAVAFDKGGSSARVEAYADYKANRDETPEAIRIAVPHIQEILKAMHIPIIEREGVEADDL 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175
           I T    AEKE F V +++ DKD  QLVS    +Y   +     + + I+ WGIP     
Sbjct: 123 IGTLAKQAEKEDFKVFMVTPDKDYAQLVSENIFMYKPAR-----MGNGIEIWGIPEVQKR 177

Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
                PE+++    + GD+ DNIPG+PG+G KTA   +  YG++E +L N  ++K  K +
Sbjct: 178 FEVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIAAYGSMEGLLENTDKLK-GKMK 236

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           E ++  AE   LS++L                I+ DC+          ++F       A 
Sbjct: 237 EKVIANAELGLLSKQLAT--------------IMLDCD----------VQFD------AK 266

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
            Y+    + E V    +  E + +       +D  +K   FS  ++Q ++++S  + +K 
Sbjct: 267 DYELSEPDAEAVTKKFDELEFRRM-------KDQFVKI--FSGEAEQGTQVSSTPSAKKQ 317

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS--KPIA 408
                          D         D            +++ K I DT   + +   P+A
Sbjct: 318 AATAAGAGQFSLFGGDGGATAATVAD------------ASTRKTIKDTQHFYQTIDSPLA 365

Query: 409 --IAISTLDQKDDTSFKVETIFID------LSVHTSQDSTGKNTL---------TKEILS 451
             + I  L ++    F  ET  +D      + V  S ++ GK             + ++ 
Sbjct: 366 RKLFIQNLLKQTSVCFDTETTGLDPLVAELVGVAFSWEA-GKGYYIPFPESKDEAQALIE 424

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510
            L+ FFE+    KIG N+KYD  VL +Y + ++G   D ML  Y+++     H++  +A+
Sbjct: 425 ELRPFFEHTGIEKIGQNLKYDIKVLAKYDVKVKGKLFDTMLAHYLINPDMR-HNMDVLAE 483

Query: 511 KWLSYTRKEIL-------KSRKS--SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            +L+YT   I        K++KS   +P+D     Q  E+A+E++++ LQL      +L 
Sbjct: 484 TYLNYTPVSITELIGKKGKNQKSMRDVPLD-----QQTEYAVEDADITLQLKQHFEKELD 538

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                 ++  ++ P++ V++ ME+ GI +D + L+ +S +++ ++  L   IY+ +GE+F
Sbjct: 539 EAGTRKLFNDIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYEEAGEEF 598

Query: 622 NLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
            +SSPKQLG+ILF K+K      KTKTGQ+ +TA+D+      D+ II+ +L++R LSK+
Sbjct: 599 KISSPKQLGEILFDKMKLVDKPKKTKTGQY-STAEDVLSYLAKDHDIIQKVLDYRGLSKL 657

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739
           KSTY D+LP  +  +  RVHT Y      TGRL+S  PNLQNIPI+T+ G+++R+AF+  
Sbjct: 658 KSTYVDALPEQV-AQDGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPR 716

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ADYSQIELRI+A +++   + Q F +  DIH   AA++F V +E+V+ + R 
Sbjct: 717 DENHTLLAADYSQIELRIIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRS 776

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           +AKT+NF IIYG+S F L+ Q  + R EA + I  Y+  +P +  Y+ +  +F R+NGYV
Sbjct: 777 NAKTVNFGIIYGVSAFGLSNQTDLSRGEAKELIDNYYKSYPKLRNYMSELVDFARENGYV 836

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           +T+  RR + + INS    +R   ER A+NAPIQGSAADI + AMI++ + LE+    TK
Sbjct: 837 KTVLDRRRYLNGINSSNGVVRGAAERNAVNAPIQGSAADIIKIAMINIFEKLENSDYKTK 896

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           MLLQ+HDELVF+VP  E+     +I   ME A      + VPL V + V  NW E
Sbjct: 897 MLLQVHDELVFDVPNIELDDIKNLIKTEMESA----FKMAVPLDVEVGVGQNWLE 947


>gi|332967876|gb|EGK06971.1| DNA-directed DNA polymerase I [Desmospora sp. 8437]
          Length = 881

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 337/981 (34%), Positives = 527/981 (53%), Gaps = 114/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAF+A PLL  +  G   NA+ GF  ML K+L+    E   SH  V 
Sbjct: 2   DKLVLIDGNSIAFRAFFALPLLKNRQ-GTYTNAVYGFTMMLMKVLE----EEKPSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   +TFR+  Y +YK  R K P  L  Q+PL++    AFGI   E+  +EADDII T 
Sbjct: 57  FDAGKLTFRHRDYKEYKGKRDKTPGELSEQIPLIKKLLDAFGIRHFELDQYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMV 180
              AEK   AVTI++ DKDL+QLVS    L  T K     ++ D+  + +K+G+ PE+++
Sbjct: 117 ARQAEKAEIAVTIVTGDKDLLQLVSDRVHLLMTRKGVTDADRYDLHKIEEKYGLKPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD  DNIPGIPG+G KTA  LL +YG++                EN+L++    
Sbjct: 177 DLKGLMGDPSDNIPGIPGVGEKTALKLLHQYGSV----------------ENVLDH---- 216

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                             ++HL      G +L   +       L+++   T  C+     
Sbjct: 217 ------------------IDHL-----PGKKLKERVAENRRDALLSKELATIFCE----- 248

Query: 301 PVVLDINTTENKGIAIETEIDRDT-TIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            V LD    + K    +T  DR T  +K  +F +L ++     ++  P +          
Sbjct: 249 -VPLDFGLADLKYEGYDT--DRVTPLLKELEFKTLLERFGGAEAKADPGE---------- 295

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                 +   + V  ++ + W + L   G A F  +  + + +H   + +A++  D K  
Sbjct: 296 ----TEEIAVETVGPEETKNWDEWLAQDGLALF--LEMSGENYHRAEV-LAVALSDGK-- 346

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                + +F++    T+++  G            +++  +    K+ +++K  ++ L   
Sbjct: 347 -----KQLFLEWG--TAREWPG-----------FRQWLRDPDRTKVCYDVKATEVALKHQ 388

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIA-QKW---LSYTRKEILKSRKSSIPIDKIS 534
           G+   GF  DI+L SY++++  S H+++ I  +KW   L        K  K   P  K  
Sbjct: 389 GLETDGFAWDILLSSYLINASESGHELSEIVDRKWGGGLPDDDAVYGKGVKRRRPEGK-- 446

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++ EH    +  I +L  LL  +L    L  +Y  L+ P+  V+++ME  G+Q+D+D 
Sbjct: 447 --ELAEHLARKARAIHRLQPLLEEELKENGLDSLYLDLELPLARVLAKMEWQGVQVDRDR 504

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E+   L  L E I++L+G +FN++SPKQLG+ILF KL  P   KTKTG + T+A
Sbjct: 505 LQSLGEELKGRLEELTEKIFELAGTEFNINSPKQLGEILFDKLGLPVLKKTKTG-YSTSA 563

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    + I++ IL +RQ+ K+ STY + L   I+  T ++HT ++ A   TGRL+
Sbjct: 564 DVLEKL-APQHEIVEEILHYRQVGKLISTYVEGLLKEIDGETGKIHTRFNQAIAATGRLS 622

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G++IR+ F+    + L +SADYSQIELR+LAH++    L + F+ 
Sbjct: 623 STDPNLQNIPIRLEEGRRIRQVFVPSEEEWLMLSADYSQIELRVLAHLSGDENLIEAFQK 682

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LD+H   A ++FGV+ ++V+P MRRHAK +NF I+YGIS + L+  L IPR EAA++I+
Sbjct: 683 ELDVHTKTAMDVFGVSADEVTPWMRRHAKAVNFGIVYGISDYGLSQNLNIPRKEAAEFIQ 742

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  +PG+  Y+E      + +GYV T+  RR    EINS   + R+  ER A+N PIQ
Sbjct: 743 RYFDSYPGVKRYMEDIVRQAKADGYVTTMLHRRRELPEINSRNFNRRSFAERTAMNTPIQ 802

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AM+ +   LE   L  ++LLQ+HDEL+FE P EE+     ++   ME A  
Sbjct: 803 GTAADIIKKAMVEMDSVLEKEGLRARLLLQVHDELIFETPAEEMEALDNLVRRVMESA-- 860

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             + L VPL+V+I     W E
Sbjct: 861 --VELAVPLQVDINTGKTWYE 879


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 352/994 (35%), Positives = 551/994 (55%), Gaps = 96/994 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA+Y+    PL++ K  G   +AI GF N L  +L   R+E+  +H  V
Sbjct: 3   LFLLDAYALIYRAYYSFIKMPLINSK--GFNTSAIFGFVNTLDNIL---RREN-PTHIGV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++++  YKA R + PE +   +P+++    A+ IP +E+ G+EADD+I T
Sbjct: 57  AFDPIEPTFRHQVFKQYKAQREETPETIRLSIPIIKDIVSAYHIPILEVSGYEADDVIGT 116

Query: 124 YTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-IPP 176
              +A+K    + + +++ DKD  QLV     +Y         E + ++ + +K+G I P
Sbjct: 117 ---VAKKTSRDYEIFMMTPDKDYGQLVDEHIFIYKPRYRKDGFEILGVKEIKEKYGFISP 173

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA----SRIKQKKRREN 232
            +M+    L GDS DNIPG PGIG  TA  L+  +G++EN+L N       +K K  R  
Sbjct: 174 IQMIDFLGLMGDSSDNIPGCPGIGEITAKKLIARFGSIENLLKNVHFLNGILKTKIERNK 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
                ET   S+ L  ++TDVPI      LI ED + P L    + LEF +L++R     
Sbjct: 234 -----ETILFSKFLATIKTDVPINFNPNELIREDIDKPVLKKIFEKLEFHQLVSRFFG-- 286

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS---LSDQTSKINSEQTPQK 349
                            E + +          +IK  QFSS    +D+  + N+E+T  +
Sbjct: 287 -----------------EKRSV---------LSIK-KQFSSSLLFTDKFVEKNNEKT--E 317

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT---MDAFHSKP 406
             L     LS        Y  I    DI   + K++     SF I T     +D   ++ 
Sbjct: 318 TVLSNFDNLSTVL---HKYRVIDKQSDIGDLINKIKIQNFFSFNIKTTEAIEIDPLSAEL 374

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + IA  TL +        E  F+           G+       +   K+ FE++  LK+G
Sbjct: 375 VGIAF-TLQEG-------EAYFLPF--------FGRKRDIIPTVQLFKEIFESDTILKVG 418

Query: 467 HNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK 522
            N+KYD  VL +YGI M     DI++  Y+++     H++  +A+ +L+Y     +E++ 
Sbjct: 419 QNLKYDINVLKKYGIRMNYPIFDILIAHYLINP-EYLHNLDFLAKTYLNYRIINTEELIG 477

Query: 523 SRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           S+K S + + ++  S + ++A EN++++L+L  +  P +      +++ R++ P++ V+S
Sbjct: 478 SKKESQLSVRQVPLSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVFVLS 537

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-P 640
            ME  G+++D   LK  S  +++ L S+E+ I+ +SG+ FN++SPK +G+ILF  LK   
Sbjct: 538 DMEEFGVKLDISALKDYSVVLNRYLESIEKIIFQISGKIFNVNSPKMVGEILFDHLKIIE 597

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +  KTK+GQ+ T+   LE +    +PI+  IL++R+  K+ +TY D+LP  ++   +++H
Sbjct: 598 NSKKTKSGQYATSEGILENLK-KKHPIVGEILKYRKSKKLLTTYIDTLPTLVSFIDKKIH 656

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T Y+ A+T TGRL+S  PNLQNIPI+   G++IRR FI       +SADYSQIELRI+AH
Sbjct: 657 TTYNQATTATGRLSSNSPNLQNIPIRDKEGKEIRRVFIPDDNCLFLSADYSQIELRIMAH 716

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   + + F N  DIH  +A+ IFGV + +++  MRR AK  NF IIYGIS F LA Q
Sbjct: 717 LSEDKNMLEAFRNGQDIHSAIASIIFGVPLAEITCDMRRKAKITNFGIIYGISVFGLAEQ 776

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++ R  A + I +YF  FP I  YI+++    R++GYVETIF R+    +INS  S +R
Sbjct: 777 LQVSRFIAKELINKYFMIFPDIKNYIDRSIAIARKDGYVETIFRRKRFLPDINSRNSVVR 836

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER +INAPIQGSAADI + AM  +H+ L D+ L +KM++Q+HDEL F V  +E+   
Sbjct: 837 KYAERNSINAPIQGSAADIIKVAMNRIHRRLIDNDLQSKMIIQVHDELNFNVFIDELDKV 896

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            QI+V+ ME A     +L+VPL VN  +  NW E
Sbjct: 897 KQIVVYEMEHAT----HLKVPLVVNCGIGKNWLE 926


>gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 908

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 330/979 (33%), Positives = 538/979 (54%), Gaps = 89/979 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            F++DG+++I+RA++A P LS  ++   VNA+ GF  +L K+ +NS K     + AV FD
Sbjct: 4   FFIIDGNAYIHRAYHALPPLSTSNN-RQVNAVYGFVKLLLKI-KNSFK---PDYMAVCFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           YP+  FR+EI+ DYKANR  + + L+ Q+P+ R A +A  +  IEI+G+EADD+IAT T 
Sbjct: 59  YPSKNFRHEIFKDYKANRKPLDKALISQMPIAREAVKALNVVGIEIKGYEADDLIATVTG 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +  G    I++ DKD++QL    T L ++  K+   D + V +K+G+ P+++  + AL
Sbjct: 119 NNKGSGVQTVIVTGDKDILQLAEDETVLIWNYSKDIMYDTKKVEEKYGVAPKQLSDIFAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ETARLSR 244
            GD+ DNIPGI GIG KTA  L++++GNLEN+L NA  +K    +  +L +  E A LSR
Sbjct: 179 MGDASDNIPGIKGIGEKTAVKLIEKFGNLENVLQNADSVKGNMGK--LLSHGKEQALLSR 236

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-PVV 303
           KL+ L   VP+   L     +D +  + +SF +  EF  L+ +    Y      ++ PV+
Sbjct: 237 KLIELNRRVPLDYKLGEFESKDIDAGKAVSFFEKYEFKSLLAK----YSVKEHELQFPVI 292

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L+             E  R+    +  F +       +NS++   ++             
Sbjct: 293 LN-------------ETHRNEEAGSGSFVTDKPVFEVVNSQERAAEV------------- 326

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                             +K+E  G  + K +  T+D+  ++ + I++      ++ +F 
Sbjct: 327 -----------------AEKIEQAGIFALKTVRSTLDSLKTRIVGISLCV----ENKAFY 365

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
                 DL        T +  + ++        F ++   KIGH++K ++ +    G+ +
Sbjct: 366 FPIGHNDL--------TARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNIYSMSGVGL 417

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQV 538
              + DIML SY L+  +S H I  +++++L +T          S+KSS     I     
Sbjct: 418 NNIYFDIMLASYCLNPAKS-HCITDMSKEYLDFTAGVGSYAWKGSKKSSFANSSIEAGAK 476

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             ++I  S  +  ++ +   ++  +KL  ++   +  +++++S+MEI+GI++D   L+  
Sbjct: 477 YANSI--SAAVFAIYKIFDFQIKEKKLSLLFFDTEMSLVEILSEMEISGIKVDLPFLRNF 534

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           + +I   L  +E NIY ++G +FN++S KQL  ++F KL  P   KTKTG + T  + L 
Sbjct: 535 NEKIVYELKIIENNIYKIAGIEFNINSQKQLSSVMFEKLNLPVIKKTKTG-YSTDEEVLV 593

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +++  + P    IL++R+L K+KSTY D L ++      R+HT ++ A T TGRL+S EP
Sbjct: 594 ELSSHEFP--AEILKYRELQKLKSTYIDPLTDYCVYYGSRIHTIFNQAVTTTGRLSSTEP 651

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP+K+  G++ R+AF+    K  ISADYSQI+LR+LAHI++ T   + F+   DIH
Sbjct: 652 NLQNIPVKSAYGKEFRKAFVPERNKIFISADYSQIDLRVLAHISQDTKFIEAFKAGTDIH 711

Query: 779 RMVAAEIFGVNIEKVSP---QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
              A EIF  NI +  P    +R  AK+INF IIYG+SPF L+ QL IP  +A +YI  Y
Sbjct: 712 SATAREIF--NIPEGYPLTDSLRSAAKSINFGIIYGMSPFGLSKQLNIPFGKAKEYIDGY 769

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+  +  ++E+      ++GYV TI GR  +  E+ S  + +R   ER A+N P+QGS
Sbjct: 770 FERYDKVKFWMEQIVKQASEDGYVRTITGRIRYIPELRSTNAQVRKAGERMALNTPVQGS 829

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           +ADI + AMISV+  ++     + MLLQ+HD+L+FEVP+ E      II + ME      
Sbjct: 830 SADIIKIAMISVYNEIKLKGYKSLMLLQVHDDLLFEVPDGESENMISIIKNKMENP---- 885

Query: 956 INLRVPLKVNIKVSNNWQE 974
           ++L +P+ V+IK   NW E
Sbjct: 886 LHLSIPIVVDIKAGRNWGE 904


>gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645]
 gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645]
          Length = 880

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 326/953 (34%), Positives = 505/953 (52%), Gaps = 93/953 (9%)

Query: 32  GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEML 91
           G PV+A+ GF   L  LL    +E    +    FD P  TFR+E+Y DYK  R ++P  L
Sbjct: 6   GQPVSAVYGFARDLANLL----REKKPDYLICAFDPPGGTFRHELYVDYKVTREEMPVDL 61

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             Q+ L+R   +A  +  +E+  +EADD++AT   I E  G   T++++DKD  QL+S  
Sbjct: 62  RAQIGLIRRMLEAMNVAILELVNYEADDVLATVATIVEANGGDCTVVTSDKDCRQLISDR 121

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             +++  K    D + ++  WG+ P+++V  Q+L GDS+DN+PG+  IG K A  LLQ+Y
Sbjct: 122 VRMFNVRKNAFYDADALMTDWGVRPDQVVDFQSLVGDSVDNVPGVALIGPKIAKELLQKY 181

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
             L+ +L NA  I   KRREN++     A LSR+LV                        
Sbjct: 182 ETLDAVLDNAGEISGAKRRENLINGRAMAELSRELV------------------------ 217

Query: 272 LISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQF 331
                      +L+  V    D DA  + P    IN  + + +  E             F
Sbjct: 218 -----------RLVRDVPIEIDWDACRVHP----INQEQVQELCREF-----------GF 251

Query: 332 SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391
            +L+ + +    E              +  P    +Y  I   + +   V KL  +   S
Sbjct: 252 RTLAREMAAFQVEAPA-----------ADKPEWIANYQTIDTIEKLDALVAKLADVKRLS 300

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T + +   +  + I+ S  DQ +     + +   D+ +  S            +L 
Sbjct: 301 FDTETTSTNPRWADLVGISFS-WDQGEGVYIPIRSPEGDVKLDESL-----------VLE 348

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
            L+   EN    K+G N+KYD +VL   G+++RG   D M+  Y+L++G  SH +  ++ 
Sbjct: 349 KLRPILENSAIEKVGQNLKYDLVVLRGVGVNVRGASFDTMVAHYLLEAGARSHGLDELSL 408

Query: 511 KWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           ++L +      E++ + K+ I +D++   +V  +A E++++ L+L  +L  ++  E L  
Sbjct: 409 RYLQHETVKISELIGTGKNQIRMDQVPVDKVGYYAAEDADIPLRLDPILSERIEAEGLGD 468

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   ++ P+IDV+ +ME  GI++D + L ++S +  + +  LE  IY L+G  FN++SPK
Sbjct: 469 LLTDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLEREIYQLAGRDFNINSPK 528

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF +L  P   KTKTG   T A+ LEQ+    + +   I+++RQ +K+K TY D+
Sbjct: 529 QLGTVLFDELNLPVIKKTKTGP-STDAEVLEQL-AKQHDMPAKIVQFRQYAKLKGTYVDA 586

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           LP  I  +T RVHT ++     TGRL+S +PNLQNIPI+T   ++IR AFI   P  KL+
Sbjct: 587 LPVLICSKTDRVHTSFNQVVAATGRLSSNDPNLQNIPIRTQESREIRSAFIPGTPDWKLL 646

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            ADYSQIELR+LAH +    L + ++ + DIH  VA+E++GV +++V+   RR AK INF
Sbjct: 647 CADYSQIELRVLAHFSGDPALMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINF 706

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            ++YG SPF LA  L I + EA  +I  YF R+PG+   +E+     +++GYV TI GRR
Sbjct: 707 GVVYGQSPFGLAKSLDIDKDEAYGFIDAYFKRYPGVDVLMEQILVDCQRDGYVRTILGRR 766

Query: 867 IHYDEINSPKSSIR-----NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
              D + +     R      + ER AIN  IQGSAADI + AM+ VH+ LE      K+L
Sbjct: 767 RAIDGVRTADKRDRLKRQLTMPERTAINTVIQGSAADIIKLAMLRVHRRLEKEGSPAKLL 826

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQIHDELVFE P E +   +Q++   ME A     NL +PL V+IK  +NW +
Sbjct: 827 LQIHDELVFETPPEYLEQLAQLVREEMESAR----NLAIPLVVDIKSGDNWAQ 875


>gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
 gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
          Length = 944

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 356/980 (36%), Positives = 529/980 (53%), Gaps = 83/980 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG + +YRAF+A     + SR  DG P  A+ GF + L K+ +  + +    + A 
Sbjct: 30  LILIDGMAMLYRAFFALQRAGMTSR--DGKPTGAVYGFTSALLKIFETYKPD----YLAA 83

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+ +YP YKANR   PE L+ QL  V     AF IP I+I GFEADD+I T
Sbjct: 84  AFDSREKTFRHHLYPLYKANRSAPPEDLISQLDAVFELLAAFDIPLIKIPGFEADDLIGT 143

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              I + E  AV I++ DKDL QLV     +    K     E +    + +++G+PPE+ 
Sbjct: 144 AARIFQPE-CAVFIVTPDKDLAQLVQDGVSILRPGKNQNELELLGRSEIAEQFGVPPERF 202

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L  LTGD+ DNIPG  GIG KTAA LL +Y +L+NI ++   +  K R   + E+   
Sbjct: 203 TDLLTLTGDTSDNIPGAKGIGPKTAATLLGKYDSLQNIYLHLGDLSPKNRL-TLEEFQPQ 261

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             L ++LV +RTD+ I + L+ L     +   L+  L  LE   +I R+           
Sbjct: 262 LDLIKQLVTIRTDLQIDLTLKELACGSPDLTLLLPLLNKLELKTVIGRL----------- 310

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PVV                       K  + +SL  + S  +   +P    L   +   
Sbjct: 311 -PVVFP---------------------KLMEHASL--EASMHDGPDSP----LAAAEPEL 342

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           + P     Y  I   + ++  +  L+     +    T +++ F ++   I+IST  +K  
Sbjct: 343 RSPRTGADYGVITTEEGLKALINSLQDAPRIAVDTETTSLNTFEAELAGISISTEARK-- 400

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   FI L+  +    +         L  L+   EN    K G N+KYD LVL +Y
Sbjct: 401 ------ARFIALANSSLNPQSA--------LELLRPLLENPELPKTGQNLKYDILVLKKY 446

Query: 480 GISMR--GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           GI +   GF D ML SYVLD     H++  +A + L Y   T +E+  + K+ + I  + 
Sbjct: 447 GIDLTPVGF-DTMLASYVLDP-EEKHNLDDLAARHLGYKTTTFEELTGTGKAKLHIFDVE 504

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q+ ++A +++++ LQL  + R KL  EK LL + E ++ P++ V++ ME  GI ID  
Sbjct: 505 PEQLSDYACQDADLALQLEEIFRKKLEGEKELLWLCEHIEFPLVSVLAAMEHAGICIDTP 564

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L++ S  + K L  L E IY  SG  FN+ SPKQL +ILF  L  P+   TKTG + T 
Sbjct: 565 HLEKTSEAVGKELELLTEKIYAASGAPFNIDSPKQLSNILFNVLGLPTKKSTKTG-FSTN 623

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++    +P++ ++LE+R L K+K+TY D+LP  +N  T R+HT ++   T TGRL
Sbjct: 624 VEVLEEL-AELHPVVASLLEYRTLQKLKTTYIDALPKIVNPLTGRLHTSFNQFITATGRL 682

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIPI++ LG++IRRAFI S P K L+SADYSQIELRI A I+    L + F 
Sbjct: 683 SSSNPNLQNIPIRSPLGKEIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEAFR 742

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N  DIH   A  IFG +  +++P MRR AK +NF ++YGI PF L+ +L IPRSEA   I
Sbjct: 743 NREDIHTATARVIFGSD--EITPDMRRKAKEVNFGVLYGIMPFGLSKRLNIPRSEAIAII 800

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             Y  ++PG+   +++     +++GYV T+ GRR +  ++NS  S+I+   ERAA+N PI
Sbjct: 801 DTYKAKYPGLFLALQEIIETGKKDGYVSTLLGRRRYIADLNSRNSNIQKAAERAAMNTPI 860

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AM    + L  + + + MLLQ+HDEL+FE  +EE    + +I  +M  A 
Sbjct: 861 QGTAADIIKCAMNLCSERLRKNSMRSVMLLQVHDELLFETTDEEKEPLADLIEEAMIDAA 920

Query: 953 LPKINLRVPLKVNIKVSNNW 972
           +      VP++V+  +  NW
Sbjct: 921 IICGLKNVPVEVDTGIGKNW 940


>gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 942

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 328/957 (34%), Positives = 522/957 (54%), Gaps = 50/957 (5%)

Query: 26  LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRP 85
           L+    GLP  AI GF  ML+KLLQ+       +H A  FD      RN++Y +YKA+R 
Sbjct: 26  LTNSKTGLPSGAIFGFWRMLFKLLQDEH----VTHIAFTFDPGTRLERNDLYEEYKAHRK 81

Query: 86  KIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM 145
            +PE L PQ+  +    QA   P  +I G EADDII +      K+   + I+S+DKDL 
Sbjct: 82  PMPEDLKPQIQKIYEMLQALEFPMYKINGIEADDIIGSLCKKFGKDFEEIVILSSDKDLY 141

Query: 146 QLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
           Q++     +    +     EKID + V    GI  E++    AL GD+ DNIPG+ GIG 
Sbjct: 142 QVLDKNIHMLRGKRGVSEFEKIDPKWVKTNIGITKEQVTDYMALLGDASDNIPGVKGIGE 201

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           K AA L+QE+G+LE I     ++K K   + ++   E A LSRKL  + T++ + I    
Sbjct: 202 KGAAKLIQEFGDLETIYKKIDKVKNKSLIDKLIADKENAFLSRKLATIVTNLKLDIKKSD 261

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
           L L +   P+ + + K   +  L   +A       A I P+V D +  E        +  
Sbjct: 262 LKLPNYYDPKKVQYFKDEGYNVLHRDLAKQ-----AGI-PIVSDGDAKEES--ETSKKTT 313

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
           +      ++ S+   +  K ++  +                +   SY +I +  ++++ V
Sbjct: 314 KGKKESNTEASADGSKKGKTDAATSV---------------VAKKSYKRIQSIDELKKIV 358

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
            KL +    S    T + D   ++ + I+ S   ++   ++     +I  S H+    + 
Sbjct: 359 SKLNSKKPISIDTETTSQDPMMAELLGISFS---EEPGVAY-----YIAFS-HSESIYSH 409

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGR 500
                +E L  LK   E+ ++ KIG NIKYD LVL  YGI ++G + D ML SY+L+ G 
Sbjct: 410 LLPSAEESLKILKPMLEDSNWKKIGQNIKYDLLVLKNYGIELKGIYFDTMLASYLLNPGE 469

Query: 501 SSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             H++  +A  +L+Y   T +E++ + K    +  I   +V E+A E++++ LQL  +L 
Sbjct: 470 RRHNMDDMAVDYLNYKTITYEELVGTGKKKQNLYDIDPDKVSEYACEDADITLQLHNVLS 529

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
           PK+       ++  ++ P++  ++ ME  GI +D+   + +S      +   E+NI+  +
Sbjct: 530 PKMDENIHKKLFYEMEMPVLLTLADMEFEGIAVDKSYFESLSGTFDTKIKEHEKNIHFYA 589

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           G +FN++S K+L  +LF  L+ P+  KT+TG + T    LE +  G +PII ++L  R+ 
Sbjct: 590 GRQFNVNSTKELQTVLFEDLRLPAEKKTQTG-YSTDHSVLESLQ-GTHPIIDDLLSIRKF 647

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           SK+KSTY D+LP  +N +T+R+HT Y+     TGRL+S  PNLQNIPIK + G+ +R+ F
Sbjct: 648 SKLKSTYTDTLPLLVNPKTKRIHTSYNQTIAATGRLSSTNPNLQNIPIKDEEGRLLRKGF 707

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
           I+    +++S DYSQIELRI+AH +    +   + +  DIH+  AA IFGV  ++V+P M
Sbjct: 708 IAKKGYEILSLDYSQIELRIMAHFSNDPNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDM 767

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R  AK +NFS+IYG++ F L+  LRI R EA ++I++YF  + G+  Y+E+   F +QNG
Sbjct: 768 RNKAKVVNFSVIYGVTSFGLSNNLRISRKEAKEFIEKYFAAYKGVATYMEEIVEFCKQNG 827

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           YVET+ GRR +  +I+S    +    +R AIN+PIQG++AD+ + AMI +H+ ++     
Sbjct: 828 YVETLLGRRRYLPDIHSSHKMVSEGAKRVAINSPIQGTSADMIKIAMIQIHEKIKKESFR 887

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +K+LLQ+HDELVFEV  +E     Q+    ME A    + L+VP+ V  K   NW E
Sbjct: 888 SKLLLQVHDELVFEVDPKEKKEFFQMAKEEMESA----MKLKVPIVVQGKFGGNWDE 940


>gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555]
 gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016]
 gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555]
 gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 880

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 343/985 (34%), Positives = 525/985 (53%), Gaps = 133/985 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG S + RAFYA P L+   +G   NA+ GF NML K+    +KE   SH    FD
Sbjct: 6   LLILDGHSLMNRAFYALPDLTN-SEGTHTNAVYGFINMLLKM----KKEIEPSHIVCTFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y +YKA R ++P  L  Q P+V+   +   I   EI GFEADD++ T + 
Sbjct: 61  RSAPTFRHDKYSEYKAGRKRMPPELSEQFPIVKEILELLSINIFEIDGFEADDLMGTLSV 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182
            AEK+G  V I++ D+D +QL + +  +  T K    +E  D   +I  +G+ P + + +
Sbjct: 121 FAEKKGMEVYIVTGDRDALQLATDSVKIVITKKGITQKEIYDRNKIIDDYGVTPTEFIDV 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DNIPG+PGIG KTA  L++EY ++EN+L N   IK KK +EN+  Y E A  
Sbjct: 181 KGLMGDASDNIPGVPGIGEKTALKLIKEYKSIENVLCNIDNIKGKKVQENLKNYMEQAVF 240

Query: 243 SRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           S+KL  + TDVPI + L+ +   E  N   L    + L+F  L++++            P
Sbjct: 241 SKKLATIVTDVPIELDLQSIESKEQYNAEGLRKLFEKLQFKSLMDKI------------P 288

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            V + +  E +   +E E+  DT  K   F         + +E    KL     +     
Sbjct: 289 KVEEQDKIEVEDFQVECEV-IDTLNKVHNF------IDSLEAEDMKNKLLYINFK----- 336

Query: 362 PINNDSYTKIVNTKDIQQWVQKLE-TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            ++ +SY K         ++ K+   IG  +F+I        H K I          D+ 
Sbjct: 337 VVDENSYAK--------NYIDKIFINIGEKNFEI--------HIKEIY---------DEN 371

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
             K        +V T+                 K  FEN    K+ +++K    +LHR G
Sbjct: 372 KIK--------AVETA-----------------KMLFENSSLSKVSYDVKVPCSILHRMG 406

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS----------YTRKEILKSRKSSIP 529
           I + G E DI + +Y++D  R+++++  I +++L+          + ++ +L SR  S  
Sbjct: 407 IKLLGIEFDIKIAAYLMDPARTNYELPDIIKEYLNIEISEEREDCFIKETLLFSRLYSTL 466

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             KISDS +                        +KLL+    +++P+  V++ ME  G +
Sbjct: 467 KKKISDSSM------------------------DKLLY---EVEQPLTFVLASMECEGFK 499

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D+D L ++  +    +  +++ IY LS E+FN++SPKQLG ILF KL  P   KTKTG 
Sbjct: 500 VDKDKLTEMEEKFKIEIDKVQKEIYFLSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG- 558

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A  LE+++ G +P+I+ I+ +RQL+K+ STY + L   I +   ++H+ ++   T 
Sbjct: 559 YSTNADVLERLH-GKHPVIEKIIYYRQLTKLYSTYIEGLKGVI-EEDGKIHSNFNQTVTT 616

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPL 767
           TGRL+S EPNLQNIPIK ++G++IR+ FI P  +   ++SADYSQIELR+LAHI+    L
Sbjct: 617 TGRLSSTEPNLQNIPIKYEMGKEIRKIFI-PDNRDCVILSADYSQIELRVLAHISGDENL 675

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N  DIH   A+E+F V + +V+   R +AK +NF I+YGI  F LA  L IPR E
Sbjct: 676 INAFINHNDIHTKTASEVFNVPLGEVTSTQRSNAKAVNFGIVYGIGDFSLARNLNIPRKE 735

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF ++P +  Y+        +N YV TI  RR    EI S    I+ + ER A
Sbjct: 736 AKSYIDAYFEKYPKVKLYMNDIVKQAEKNFYVTTILNRRRFIPEIKSSNKIIKALGERFA 795

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N PIQGSAADI + AM++V   L+D+   +K++LQ+HDELV  V ++E+     I+   
Sbjct: 796 MNTPIQGSAADIIKIAMVNVFNRLKDNNFKSKIILQVHDELVLNVYKDELKDVKDIVKEE 855

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           ME        L+VPL+V+I + +NW
Sbjct: 856 MENV----FKLKVPLEVDISIGDNW 876


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 335/985 (34%), Positives = 513/985 (52%), Gaps = 55/985 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++ L+L+D    IYR+++A    PL ++   G  V+A+ GF   L  +L+  R      +
Sbjct: 6   QDTLYLLDSYGLIYRSYFAFISHPLTNKA--GENVSALYGFFRSLAMILKTYRPR----Y 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F   FD    TFR+E Y +YKA R K PE L  Q+P +     A GI  +   GFEADDI
Sbjct: 60  FLAAFDSRTPTFRHEWYSEYKATRDKTPEDLHAQIPHIEKILTALGIACLRKDGFEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPE 177
           IAT    + +EG    IIS DKDL QLV     +    K E +    +E V   WG+ P 
Sbjct: 120 IATLARRSAQEGRRCVIISGDKDLAQLVGDFVSVLKPDKSEALAQCGVEEVKAHWGVAPA 179

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +M+   +L GDS DNIPG+ GIG KTA  LLQ+YG L+ +  +   I    +++ +    
Sbjct: 180 QMLDYLSLIGDSADNIPGVKGIGPKTAVKLLQDYGTLDAVYEHIDSIAGAVQKK-LAAGK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           ++A  S+KL+ L  +VPI   L+       +     + LK  E    + R+   Y   A 
Sbjct: 239 DSAYFSKKLITLADNVPIEGTLDDYRCTALHYAETAALLKEYE----LPRLGELYAKAAG 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E      +  E    A + +++  T  KT   ++  D  +K  +    Q   L +   
Sbjct: 295 ESETAG---SAAEQNTAAGKADVNTATAGKTGATTAADDIGTKPANSAAAQPAELRK--- 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 N+  Y  + + K+++  + + E  G A+F   T  ++  +   +  ++S     
Sbjct: 349 ------NDGEYRTVTDAKELEAVIAEAEAQGFAAFDCETTGLNPLYDSLVGFSLS----- 397

Query: 418 DDTSFKVET-IFIDLSVHTSQDSTGKNTLTKEILSYLKKF----FENEHFLKIGHNIKYD 472
                K  T I++ L     +   G+       L+  KK     + N+    + HN K+D
Sbjct: 398 ----LKAGTGIYVPLKAPAPE--LGEQPFAVMPLAAAKKLLARLWNNKELTLVLHNGKFD 451

Query: 473 KLVLHRYGISMRG---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
             VL   G+  R      D M+ +++L+    S  + ++ +  L     +          
Sbjct: 452 YQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSFGLENLTEAQLGLQGLDYKDVVPKGCT 511

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +S  Q   +A E+++  LQL+ + +P L    L  ++E L+ P++ +++ ME  GI 
Sbjct: 512 FAAVSLPQATAYAAEDADFTLQLYHVYKPALEQANLTTLFETLEMPLMPLLADMEAQGIF 571

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           + ++ L   S E++  L   E  IY L G  FN++SPKQL ++LFT+ K P+G KTKTG 
Sbjct: 572 LKKEELAAFSEELAGTLARDEAEIYKLVGHPFNIASPKQLQEVLFTERKLPTGKKTKTG- 630

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T    LE++   D  +   IL++R  +K+KS YAD+LP  +     R+HT +    T 
Sbjct: 631 YSTDISVLEELAAIDE-LPAKILDYRASAKLKSGYADALP-LLADANGRIHTSFIQTGTA 688

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G+KIR+AF +    KLISADY+QIEL ILAH ++   L +
Sbjct: 689 TGRLSSRDPNLQNIPIRGEEGRKIRKAFYAADGCKLISADYAQIELVILAHFSQDENLVK 748

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    D+H   AA IF V +E V P MRR AK INF ++YG+S FRLA QLRI R+EAA
Sbjct: 749 AFRQGTDVHAATAALIFNVPVENVVPDMRRIAKVINFGVMYGMSAFRLANQLRISRTEAA 808

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           D+I RYF  + G+  ++E  K    + G+VET+ GRR +   INS   + R   ER AIN
Sbjct: 809 DFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGRRRYIRAINSRNQTQRAAAERIAIN 868

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQGSAADI + AM+ V ++L+   L+  +LLQ+HDEL+ E P+ E+ +   ++   ME
Sbjct: 869 TPIQGSAADIVKTAMLHVDRALKRQHLSAHLLLQVHDELILEAPDSEVDSVKALLKQEME 928

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
                 + L VPL+V+I+  + W +
Sbjct: 929 HV----VKLAVPLRVSIESGSCWGD 949


>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
 gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
          Length = 950

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 340/979 (34%), Positives = 530/979 (54%), Gaps = 80/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+DG + +YRAF+A      K  DG+P  A  GF   L K+ +    +    + AV 
Sbjct: 36  ELFLLDGMALVYRAFFALQRADMKTRDGVPTGAAFGFLTTLLKIYETYAPD----YLAVA 91

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y  YKANRP+ PE L+ QL  +    +AF IP ++  G+EADD+I T 
Sbjct: 92  FDSREKTFRHERYDAYKANRPQPPEDLITQLDFIFRLIEAFNIPILKQPGYEADDLIGTA 151

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
               E E   + I+S DKD+ QL+     L    K +    +     + ++ GI P++ +
Sbjct: 152 AREFEPE-CRINIVSPDKDMTQLIHDGVTLLKPGKRQNELLRFGAAELKEELGIAPDQFI 210

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  LTGDS DNIPG  GIG KTA+ LL  YG+L+ I  N  ++  + R+ ++ E+    
Sbjct: 211 DLLTLTGDSSDNIPGAKGIGPKTASKLLLSYGSLDEISKNLEKLPPRTRK-SLEEFLPER 269

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L R LV ++TD+ +  PL  L     +  +L   L+ LE   + +++   +        
Sbjct: 270 ELIRDLVTIKTDIDLQTPLASLQCGQPDPEKLFPLLERLELRAIASKIPDLF-------- 321

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P +     T  K IA                    D   K+  E         R   +++
Sbjct: 322 PAI-----TPPKEIA-------------------PDNAPKVKREA-------HRAPTITE 350

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P  +  YT I   +++    + L  + S +    T +++ F ++ + I+IS   Q    
Sbjct: 351 -PPEDAVYTLIDTEEELTTLTETLAGLSSFALDTETTSLNTFEAELVGISISVKPQ---- 405

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E +FI  S    +         ++ LS LK   EN    K G N+KYD LVL  YG
Sbjct: 406 ----EAVFIYCSPEGLK--------PEKALSILKPVLENPAIEKWGQNLKYDILVLKNYG 453

Query: 481 ISMR--GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535
           I +   GF D ML SYV++    +H++  +AQ+ L Y   T  E+  + K ++P+ ++  
Sbjct: 454 IQLAPTGF-DTMLASYVINP-EETHNLDDLAQRHLQYRTTTYSELCGTGKKAVPLRQVPL 511

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER-LDKPMIDVVSQMEITGIQIDQDL 594
             ++ +A +++++ L+L   L  +L   + L    R ++ P+++V+  ME  GI +D   
Sbjct: 512 EALKNYACQDADIALRLQNTLEKQLKDNQELEWLCRNIEFPLVNVLVAMEYRGISLDTKH 571

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L++ + +++     L+E IY  +G  FN+ SPKQLG+ILFT+L  P+   TKTG + T  
Sbjct: 572 LEKTATKVASLTADLKERIYATAGSTFNIDSPKQLGEILFTRLGLPAKKTTKTG-YSTNV 630

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE++    +PI ++ILE+R L K++STY ++LP  +N  T ++HT ++   T TGRL+
Sbjct: 631 QVLEELAM-IHPIAQDILEYRSLQKLRSTYIEALPKILNPATGKLHTSFNQHITATGRLS 689

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQNIPI+T+LG++IR+AFI+   +  L+SADYSQIELRI A ++    L + F N
Sbjct: 690 SSNPNLQNIPIRTELGKEIRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIEAFRN 749

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A  IF  + E V+  MRR AK +NF ++YGI P+ L+ +L I + EA   I 
Sbjct: 750 QEDIHAATAKAIF--DTEDVTSDMRRKAKEVNFGVLYGIQPYGLSMRLNISQKEAKAIID 807

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            Y  ++PG+ E ++       +NG+V T+ GRR +   +NS   +IR   ERAA+N P+Q
Sbjct: 808 TYKSKYPGLFEALDALVRQAAENGFVTTLLGRRRYIAALNSRNGNIRKAAERAAMNTPVQ 867

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM  +  ++++HK+ + MLLQ+HDELVFE  EEE      ++V SM++A L
Sbjct: 868 GTAADIIKYAMCLIENTMQEHKMHSTMLLQVHDELVFETNEEEHEKLETMVVASMKEAAL 927

Query: 954 PKINLRVPLKVNIKVSNNW 972
                +VP++V+  +  NW
Sbjct: 928 VCGLKQVPVEVDTGIGKNW 946


>gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313]
          Length = 894

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 343/989 (34%), Positives = 521/989 (52%), Gaps = 123/989 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L  +DG+S + RAFY  P L    DG+  N I  F N++ K ++    E I     V FD
Sbjct: 6   LMAIDGNSILNRAFYGLPELLTTSDGIYTNGIYVFLNIMHKFIEEENPEYIC----VAFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+  Y  YKANR  +PE L  Q+PL++    A  I  +E++GFEADDI+ + + 
Sbjct: 62  LKAPTFRHNKYEGYKANRKGMPEELRVQVPLLKEVLDAMNIKRLEMEGFEADDILGSVSL 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEHVIKKWGIPPEKMV 180
            AEK+G  V +++ D+D  QL+ P+T L          + E+ D   +++ +GI PE+ V
Sbjct: 122 CAEKKGLEVILVTGDRDAFQLIGPSTRLKLPRTRGGKTEVEEYDYNKIVEVYGIKPEQFV 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GD+ DNIPG+PGIG KTA  L++EY NLEN+  +   IK+K  RE +  + E A
Sbjct: 182 DVKALAGDTSDNIPGVPGIGEKTALALIKEYNNLENLYNSLDSIKKKGLREKLETFKEQA 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+                L L + N P L                     CD   ++
Sbjct: 242 FLSRE----------------LALIERNMPSL---------------------CDIEELK 264

Query: 301 PVVLDINTTENKGIAIETEIDRDTT---IKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            V                EIDR+ T    K  +F S  D            K  L  +Q 
Sbjct: 265 RV----------------EIDREKTYEIFKRLEFRSFID------------KFGLNDVQI 296

Query: 358 LSQYPINNDSYTKIV-NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            +   +N     KI  N  +++     +          + D   +F  K  AIAIS ++ 
Sbjct: 297 QNTVELN----VKIAKNASELESLKNNILKSRKVCIYHLIDKTGSFSQKLAAIAISPVED 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                   E  ++D + +  +D         E     K   E+ +  K GH++K   + L
Sbjct: 353 --------EAWYLDFTNNIDED---------EFFRQFKDVLEDGNIKKYGHDLKNFIVYL 395

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI--LKSRKSSIPI--- 530
           +  GI   G   D M+ +Y+++  + ++ I+ +AQ++L+ + K +  L  +  S  +   
Sbjct: 396 NNRGIDFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSVKAVEELAGKGKSFTLFKD 455

Query: 531 ---DKISDS-QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
              D +S +  V  H I  S V  ++  LL+          +Y  ++ P++  ++ ME  
Sbjct: 456 MQPDVLSKTVGVYPHVI--SKVSRKIDSLLKEN----NQERLYYDIELPLVRTLADMEYY 509

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G +++ D L + S E+ + +  + + IY L+GE+FN++SPKQLG ILF KL  P   KTK
Sbjct: 510 GFKVNVDALVEFSKELQEKIDVVTKEIYTLAGEEFNINSPKQLGVILFEKLGLPIIKKTK 569

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T A+ LE++    + I++ ILE+RQL K+KSTYA+ L   IN  T ++H+ ++  
Sbjct: 570 TG-YSTDAEVLEEL-SDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFNQT 627

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765
            T TGR++S EPNLQNIPIK ++G+KIR+ FI S     L+ ADYSQIELR+LAHI    
Sbjct: 628 VTATGRISSTEPNLQNIPIKLEMGRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDE 687

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            +   F N+ DIH   AA +FG+  E+V+P MR  AK +NF I+YGI  F LA  L+I R
Sbjct: 688 NMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNFGIVYGIGDFSLAKDLKISR 747

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  Y  R+P + +Y+       ++ G+V T+F RR +  E+ S   +IR+  ER
Sbjct: 748 KEARAYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRRRYLPELKSRNFNIRSFGER 807

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N PIQGSAADI + AM+ VH  L+  KL ++++LQ+HDEL+ E  ++E     +I++
Sbjct: 808 VAMNTPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILL 867

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M+ A    ++L+VPL V IK  +NW E
Sbjct: 868 EGMQNA----VSLKVPLVVEIKSGSNWYE 892


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 338/990 (34%), Positives = 526/990 (53%), Gaps = 95/990 (9%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++++D    IYRA++A    PL +   D   ++A+  F   L  L+          + A 
Sbjct: 11  VYILDSYGLIYRAYFALLNHPLTNPGGDN--ISALVIFFKNLKALISKYN----PCYLAA 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E+Y +YKANR K PE L  Q+P +    +A  IP +   GFEADDIIAT
Sbjct: 65  AFDSRVKTFRHELYAEYKANRAKTPEDLHAQVPWIEEILEALEIPVLRYDGFEADDIIAT 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-----YDTVKEEKIDIEHVIKKWGIPPEK 178
                 +E     I+S DKDL+QLV+  +CL           E I  + V++KWGIPPEK
Sbjct: 125 VAKKCAQENRPCRILSGDKDLLQLVT-DSCLEMQPDRANGGWEVIGAQEVLEKWGIPPEK 183

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++   +L GD+ DN+PG+ G+G KTA  LL +YG L+ I  +AS IK     E I    +
Sbjct: 184 ILDYLSLVGDASDNVPGVKGVGDKTAIKLLTQYGTLDEIYAHASEIK-GALGEKIRNDKD 242

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A  S+KL+ LR DVP+ I  E    ++ N      F    E  +     A         
Sbjct: 243 NAYFSKKLITLRYDVPVEIDFESFCTKNIN------FKSGAEVLEKYGAYAIA------- 289

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                        K  A ET  +  +               K+  ++ P++      +K+
Sbjct: 290 -------------KSFASETAAEIHSE-------------EKLTLQEEPEE------KKV 317

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQK-LETIGS-ASFKIITDTMDAFHSKPIAIAISTLDQ 416
                N   Y    N  +++ + Q  LE+     +F   TD+++   +  +  ++S    
Sbjct: 318 LSVKQNEGDYKPCTNLDELKSFAQSILESAEKIVAFDTETDSLNTHEANLVGFSLSVEKG 377

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLV 475
           K           I + V  S       T++K + L+ L+K F  +    + HN K+D  V
Sbjct: 378 KG----------IYVPVILSGGMFAPETISKKDCLAVLEKLFAEKELTLVMHNGKFDLEV 427

Query: 476 LHRYGISMRG---FEDIMLMSYVLD---SGRSSHDIASIAQKWLSYTR---KEILKSRK- 525
           L   G+S +      D M+ +++L+   SG+S + +  +A+  L       K+I++  + 
Sbjct: 428 LAANGMSAKTECKIFDTMIAAWLLNPAASGKSPYSLEFLAETKLGLKGIEFKDIVQKNQT 487

Query: 526 -SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
            + +P++K       ++  E+S+  LQL+ LL+ ++    L  ++  ++  ++ ++  ME
Sbjct: 488 FADVPLEK-----AFKYGAEDSDFTLQLYYLLKDEIKKSNLEKLFYEMEMKVLPILVSME 542

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           I GI +D+  L +   E++  +   E+ IY  +G +FN++SPKQL +ILF K   P G K
Sbjct: 543 IQGIHLDKKKLNEYKDELAVLISEKEKEIYKEAGCEFNIASPKQLQEILFEKRNLPHGKK 602

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTG    TA   E +   ++P+ K IL++R  +K++STY ++LP  +  +  R+HT + 
Sbjct: 603 TKTGYSTDTAVLEELVFSTNDPLPKMILDYRSYTKLQSTYVEALP-LLADKNGRIHTSFL 661

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
              T TGRL+S +PNLQNIP++ + G++IR AF + P   LISADYSQIEL +LAH++  
Sbjct: 662 QTGTATGRLSSRDPNLQNIPVRDESGRRIRSAFTAVPGTVLISADYSQIELVVLAHLSGD 721

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F N +D+H+  AA I+G++ E+V P+ RR AKT+NF ++YG+S FRLA +L I 
Sbjct: 722 KNLCSAFINGIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAFRLANELNIS 781

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R+EA ++I +YF  +  + +++++TK   R+NGYVETI GRR +  EI S    +    E
Sbjct: 782 RTEAKNFIDQYFSTYSDVKKFLDETKRMARENGYVETITGRRRYIPEIKSSSKIVLQGAE 841

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN PIQGSAADI + AMI V  +LE      KMLLQ+HDEL+FE PE+    A  II
Sbjct: 842 RIAINTPIQGSAADIVKTAMIKVQAALEKSGTGAKMLLQVHDELIFECPEDNAGNAISII 901

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ME A    + L++PL+V+++   NW E
Sbjct: 902 QREMENA----VQLKIPLRVSVERGKNWGE 927


>gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12]
 gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12]
          Length = 859

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 336/940 (35%), Positives = 506/940 (53%), Gaps = 93/940 (9%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVR 99
             NM+ KL+++     IA    V+FD    TFR+E YP+YKA+RP +P+ L  Q  PL++
Sbjct: 1   MANMIKKLIKDYHPAEIA----VVFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQ 56

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
           L     G+P + I G EADD+I T    A ++G  V I + DKD+ QLV+    L +T+ 
Sbjct: 57  LLA-IMGLPLLIIDGVEADDVIGTLARQATEQGIPVVISTGDKDMAQLVNEHVTLINTMS 115

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
              +D+  V +K+G+ P +++    L GD+ DNIPG+   G KTA   L EY  L+N+L 
Sbjct: 116 NYTMDVAGVKEKFGVEPAQIIDYLTLVGDTSDNIPGVSKCGPKTAVKWLSEYQTLDNLLA 175

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
           ++  I  K     I EY            LR  +P                        L
Sbjct: 176 HSHEITGK-----IGEY------------LRASIP-----------------------QL 195

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET--EIDRDTTIKTSQFSSLSDQ 337
             +K +  + T  D        + L++     K +A E   E+ R+   K +    L +Q
Sbjct: 196 PLSKKLVTIKTDID--------LPLNLGELHPKAVAKEQLIELVRELEFK-NWLKELLEQ 246

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
           T    S  T   L             +  +Y  +     +  W+Q+LE          T 
Sbjct: 247 TENHASLTTEMTL-------------SPSTYELVTTQAQLDDWLQQLENCQVFCLDTETT 293

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           ++D   ++ + I+++  ++K   +  +  I  D SV   +D         E+ + +K   
Sbjct: 294 SLDIMAAEIVGISLAIEEKK---AAYIPFIHTDGSVQLLRD---------EVFAAIKPIL 341

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY- 515
           EN    KIG NIKYD  VL  +GI ++G   D ML SY+L+S    HD+ +++ K+L + 
Sbjct: 342 ENPAIKKIGQNIKYDYSVLKNHGIHLQGLAYDTMLESYILNSNAGRHDMDTLSLKYLGHK 401

Query: 516 --TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
             T ++I       +  D+I   +   +A E++++ LQL   L P ++ E L  V+  ++
Sbjct: 402 TITFEDIAGKGAKQLRFDQIPVDKASVYAAEDADITLQLHHKLYP-MMAESLHSVFNDIE 460

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+I V+++ME+ G+ ID + L+Q    + + +  LEE    L+G+ FNLSSPKQL +IL
Sbjct: 461 MPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEEAIQLAGKPFNLSSPKQLQEIL 520

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F + K P  AKT TGQ  +TA+ + Q    D  +   ILE R L+K+ STY D+LP  IN
Sbjct: 521 FNEQKIPVIAKTPTGQ-PSTAESVLQELAFDYRLAAVILEHRGLTKLVSTYIDALPKKIN 579

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             T RVHT Y+ A   TGRL+S EPNLQNIPI+ + G+ IR AFI+PP + +++ADYSQI
Sbjct: 580 AETGRVHTSYNQAVAATGRLSSSEPNLQNIPIRNEEGRLIRTAFIAPPEQVILAADYSQI 639

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+AH+++   L   F N  DIH   AAEIF +  E+V+ + RR AK +NF +IYG+S
Sbjct: 640 ELRIMAHLSQDENLLTAFANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIYGMS 699

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F LA Q+ + R +A +YI  YF R+P + EY+ +T+    + GYVET+ GRR++  EIN
Sbjct: 700 AFGLAKQIGVERQDAQNYIDTYFQRYPKVLEYMNRTRQQAHEQGYVETLCGRRLYLPEIN 759

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEV 932
           +     +   ER AINAP+QG+AADI ++AMI++ K          +M++Q+HDELVFEV
Sbjct: 760 TRNLMRQKAAERTAINAPMQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFEV 819

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +EI  ++  I   ME+A    + L VPL V+I    NW
Sbjct: 820 ASQEIEASTVKIRQLMEQA----MQLSVPLLVSIGTGPNW 855


>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
 gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
          Length = 936

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 343/990 (34%), Positives = 523/990 (52%), Gaps = 102/990 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           K+  LFL+DG + +YR+F+A   L R      DG+P  A  GF   L K+ +  + E   
Sbjct: 29  KKPSLFLLDGMALVYRSFFA---LQRAGMSTKDGIPTGAAYGFLMTLLKIFETGKPE--- 82

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            + AV FD    TFR+E+Y  YKANRP+ PE L+ QL L+    +AF IP ++  G+EAD
Sbjct: 83  -YLAVAFDSKEKTFRHELYAPYKANRPEPPEDLIAQLELIFKLVEAFRIPILKQPGYEAD 141

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D+I +     EK+   + I++ DKDL QLV+    +    +     + +  + V K++G+
Sbjct: 142 DLIGSAVRQFEKQ-CEIVIVTPDKDLAQLVNEGVSILKPGRNRNELDTMGCDEVKKQFGV 200

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           PPE  +    LTGDS DNIPG  GIG KTA+ LL  YG LEN+L +   +  + R+ ++ 
Sbjct: 201 PPECFIDFLTLTGDSSDNIPGAKGIGPKTASKLLTTYGTLENVLAHIEELAPRSRK-SLE 259

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E+    +L + LV +RTD+ +   L  L   + +  +L   L+ LE              
Sbjct: 260 EFETNRKLIQALVTIRTDIELDTTLPELASGEPDSVKLFGLLEKLEM------------- 306

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                                +S++++   I    TP +  L+ 
Sbjct: 307 -------------------------------------NSVAEKIPHIFPGSTPPRTGLQE 329

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
             + S  P    +Y  I     + +    LE   S S    T +++ F ++ + I+I   
Sbjct: 330 QSEPSFSPPEGAAYHLIDTEAALTELTNTLEKQSSFSIDTETTSLNTFEAELVGISICWK 389

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                     E  FI          T K    K     L+   EN    K G N+KYD L
Sbjct: 390 PG--------EAYFIHF--------TDKELSAKTFPGKLQDVLENPDIKKTGQNLKYDIL 433

Query: 475 VL--HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           VL  H   ++  GF D ML SYV++     H++  +A+K L++   T  E+  + K +IP
Sbjct: 434 VLKNHHVRLAPVGF-DTMLASYVINP-EEKHNLDDLAKKHLNHRTITYSELTGTGKKAIP 491

Query: 530 IDKISDSQVQEHAIENSNVILQLW----LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           I ++   ++  +A ++++V LQL     +LL     +E+L      ++ P+++V++ ME 
Sbjct: 492 IREVPIDRLTVYACQDADVALQLEQKQKILLGENSELEQLCV---NIEFPLVEVLADMEY 548

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI +D   L++ +  +++ LL L E IYD +G  FN+ SPKQLG++LF  L  P+   T
Sbjct: 549 LGIALDTAQLERTAETVNRQLLELTERIYDTAGTIFNIDSPKQLGNVLFNVLGLPAKKTT 608

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T  Q LE ++   +P+ K++LE+R L K+K+TY D+LP  +N +T RVHT ++ 
Sbjct: 609 KTG-FSTNVQVLEDLSL-IHPVAKDLLEYRSLQKLKTTYIDALPKILNPKTGRVHTSFNQ 666

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S  PNLQNIPI+T LG++IR+AFI S   + L+SADYSQIELRI A I++ 
Sbjct: 667 HITATGRLSSSNPNLQNIPIRTPLGREIRKAFIPSTSDRYLLSADYSQIELRIAAEISQD 726

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
           + L   F N  DIH   A  IF  + + ++  MRR AK +NF ++YGI P+ LA +L I 
Sbjct: 727 SHLIDAFRNREDIHTATAKTIF--DTDDITKDMRRKAKEVNFGVLYGIQPYGLAQRLNIS 784

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           + EA   I  Y  ++PG+   ++ T     + GYV T+ GRR + + + S   +IR   E
Sbjct: 785 QKEAKAIIDTYISKYPGLFSALQTTITEAAEKGYVTTLTGRRRYIENLRSRNRNIRMAAE 844

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAA+N PIQG+AADI + AM  V ++++  ++ + MLLQ+HDELVFE  EEE    ++I 
Sbjct: 845 RAAMNTPIQGTAADIIKCAMGLVSEAIKKKRMQSAMLLQVHDELVFETTEEEKAALAEIA 904

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M+KA        VP++V I    NW E
Sbjct: 905 EGCMQKAAELCGLETVPVEVEIGTGKNWLE 934


>gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20]
 gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20]
          Length = 894

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 341/989 (34%), Positives = 515/989 (52%), Gaps = 123/989 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L  +DG+S + RAFY  P L    DG+  N I  F N++ K ++    E I     V FD
Sbjct: 6   LMAIDGNSILNRAFYGLPELLTTSDGIYTNGIYVFLNIMHKFIEEENPEYIC----VAFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+  Y  YKANR  +PE L  Q+PL++    A  I  +E++GFEADDI+ + + 
Sbjct: 62  LKAPTFRHNKYEGYKANRKGMPEELRVQVPLLKEVLDAMNIKRLEMEGFEADDILGSVSL 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEHVIKKWGIPPEKMV 180
            AEK+G  V +++ D+D  QL+ P+T L          + E+ D   +++ +GI PE+ V
Sbjct: 122 CAEKKGLEVILVTGDRDAFQLIGPSTRLKLPRTRGGKTEVEEYDYNKIVEVYGIKPEQFV 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GD+ DNIPG+PGIG KTA  L++EY NLEN+  +   IK+K  RE +  + E A
Sbjct: 182 DVKALAGDTSDNIPGVPGIGEKTALALIKEYNNLENLYNSLDSIKKKGLREKLETFKEQA 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+                L L + N P L                     CD   ++
Sbjct: 242 FLSRE----------------LALIERNMPSL---------------------CDIEELK 264

Query: 301 PVVLDINTTENKGIAIETEIDRDTT---IKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            V                EIDR+ T    K  +F S  D            K  L  +Q 
Sbjct: 265 RV----------------EIDREKTYEIFKRLEFRSFID------------KFGLNDVQI 296

Query: 358 LSQYPINNDSYTKIV-NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            +   +N     KI  N  +++     +          + D   +F  K  AIAIS ++ 
Sbjct: 297 QNTVELN----VKIAKNASELESLKNNILKSRKVCIYHLIDKTGSFSQKLAAIAISPVED 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                   E  ++D + +  +D         E     K   E+ +  K GH++K   + L
Sbjct: 353 --------EAWYLDFTNNIDED---------EFFRQFKDVLEDGNIKKYGHDLKNFIVYL 395

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +  GI   G   D M+ +Y+++  + ++ I+ +AQ++L+ + K + K            D
Sbjct: 396 NNRGIDFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSVKAVEKLAGKGKSFTLFKD 455

Query: 536 SQ---------VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            Q         V  H I  S V  ++  LL+          +Y  ++ P++  ++ ME  
Sbjct: 456 MQPDVLSKTVGVYPHVI--SKVSRKIDSLLKEN----NQERLYYDIELPLVRTLADMEYY 509

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G +++ D L + S E+ + +  + + IY L+GE+FN++SPKQLG ILF KL  P   KTK
Sbjct: 510 GFKVNVDALVEFSKELQEKIDVVTKEIYTLAGEEFNINSPKQLGVILFEKLGLPIIKKTK 569

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T A+ LE++    + I++ ILE+RQL K+KSTYA+ L   IN  T ++H+ ++  
Sbjct: 570 TG-YSTDAEVLEEL-SDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFNQT 627

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765
            T TGR++S EPNLQNIPIK ++ +KIR+ FI S     L+ ADYSQIELR+LAHI    
Sbjct: 628 VTATGRISSTEPNLQNIPIKLEMSRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDE 687

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            +   F N+ DIH   AA +FG+  E+V+P MR  AK +NF I+YGI  F LA  L+I R
Sbjct: 688 NMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNFGIVYGIGDFSLAKDLKISR 747

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  Y  R+P + +Y+       ++ G+V T+F RR +  E+ S   +IR+  ER
Sbjct: 748 KEARAYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRRRYLPELKSRNFNIRSFGER 807

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N PIQGSAADI + AM+ VH  L+  KL ++++LQ+HDEL+ E  ++E     +I++
Sbjct: 808 VAMNTPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILL 867

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M+ A    ++L+VPL V IK  +NW E
Sbjct: 868 EGMQNA----VSLKVPLVVEIKSGSNWYE 892


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 342/992 (34%), Positives = 532/992 (53%), Gaps = 97/992 (9%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYR++YA   +P ++ K  GL  +A+ GF N L ++L   R     +H 
Sbjct: 2   DKLFLLDAYALIYRSYYALLRSPRINSK--GLNTSAVLGFMNTLNEVLTKER----PTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD+   TFR+E +P YKA R + PE +   +P+++   +A+ IP +++ GFEADDII
Sbjct: 56  GVAFDH-GKTFRHEAFPQYKAQREETPEDIKLSVPIIKRILEAYRIPILQVDGFEADDII 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PE 177
            T      +EG A  +++ DKD  QLV+    +Y        ++   + V  K+GI  P 
Sbjct: 115 GTVATRFGREGVAAYMLTPDKDYGQLVADNVYIYRPRHGGGYEVMGPKEVQAKYGIASPL 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V L AL GDS DN PG PG+G KTAA L+ E+G++                EN++  A
Sbjct: 175 QVVDLLALMGDSADNFPGCPGVGEKTAAKLIGEFGSV----------------ENLI--A 216

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            TA+L  KL   R  V   +       ED    + ++ ++          V T    D  
Sbjct: 217 NTAQLKGKL---REKVEGAV-------EDIKMSKFLATIR--------TDVPTDIRLDDL 258

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E      +  E K   I TE+         +F+S   +   +N  +  QK    +L  
Sbjct: 259 KVE------SPDEAKLDQIFTEL---------EFNSFRKRM--LNKAEKKQKTDNLQLDF 301

Query: 358 LSQYPINNDSYTKIVN---TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            ++ P +  S  +  N    K I    Q +ET   A         D F +  I     +L
Sbjct: 302 FAENPTDGPSVAENANFETLKTIPHEYQLIETEDEAR-----RLYDFFRTNKIL----SL 352

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEHFLKIGHN 468
           D +  ++  +E   + LS    +                +I++  K  +E+   LK+G N
Sbjct: 353 DTETTSTNAIEAELVGLSFAVEERKAFYVAIPANREEALKIVAIFKPLYEDPEILKVGQN 412

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
           IKYD  VL  YG+ + G   D M+  Y+L      H++  +A+ +L Y     +E++  R
Sbjct: 413 IKYDIEVLRHYGVEVAGPMFDTMIAHYLLQP-ELRHNMDYMAEVYLGYRTVHIEELIGPR 471

Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            ++   +  +S + + E+A E++++ L+L  +L PKL    +  ++  ++ P++ V++ M
Sbjct: 472 GRNQKNMRDLSPTDIYEYACEDADITLRLKNVLEPKLDEAGVARLFHDIEMPLVGVLADM 531

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSG 642
           E+ G+ +D + L + S   +K + ++E++IY+L+GE+FN+SSP+Q+GDILF K+K     
Sbjct: 532 ELNGVCLDTEALHETSEVFNKRMTTIEQHIYELAGEQFNISSPRQVGDILFGKMKIVDKP 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTGQ+ T+ + L+Q+    +PII  IL +R L K+ STY D+LP  IN RT R+HT 
Sbjct: 592 KKTKTGQFVTSEEVLQQLRS-KSPIIDEILNYRGLKKLLSTYVDALPKLINPRTGRIHTS 650

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++   T TGRL+S +PNLQNIP++ D G++IR+ FI  P     SADYSQIELRI+AH++
Sbjct: 651 FNQTVTATGRLSSSDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLS 710

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   + + F    DIH   AA I+  +I +V+P  R+ AK  NF IIYGI+ + LA ++ 
Sbjct: 711 EDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTYGLAQRMD 770

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I   EA D I  YF  FP +  Y+E+ K   R+ GY ET+F RR +  +INS  +++R  
Sbjct: 771 ISNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINSHNATVRGF 830

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAPIQGS ADI + AM+ +H+  +   + +KM+LQ+HDEL F V  EE     +
Sbjct: 831 AERNAINAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFPEEKEQVER 890

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I+V  M+ A      LRVPL  +     NW E
Sbjct: 891 IVVEEMQGA----YKLRVPLVADAGWGKNWLE 918


>gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
 gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
          Length = 931

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 337/982 (34%), Positives = 525/982 (53%), Gaps = 82/982 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +FL+DG + ++R++YA  L+S +     G P  AI GF N + K+ +  R +       V
Sbjct: 16  MFLLDGMALVFRSYYA--LMSARMQTQSGFPTGAIYGFINTILKIEETYRPD----FLVV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +PDYKA RP  P  L+ QL  +     A GIP ++  GFEADDII T
Sbjct: 70  AFDSKEKTFRHEAFPDYKAQRPAPPTDLIQQLGKILEIVPAMGIPMLKRPGFEADDIIGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKM 179
            T   E +   + +++ DKD  QLV     L    ++         E V   +G+ PE+ 
Sbjct: 130 LTKKFE-DRCNLFLVTPDKDFAQLVHDGVKLLKPARQNDEFLLYGAEEVKSHYGVYPEQF 188

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + + AL GDS DNIPG PGIG KTAA L+  YG++  I  N   ++ + R E++L+    
Sbjct: 189 LDMLALMGDSSDNIPGAPGIGPKTAANLINRYGSIAKIYENLYELRPRAR-ESLLKSKAA 247

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
               R L+ ++TD+ I + L+ L  +  +   L+   + LEF  L  R  ++ +      
Sbjct: 248 LENGRFLMTIKTDMDIDLTLDDLKQKSPDLDFLLPLFEELEFRTLAARFKSSPEK----- 302

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                      K  Q +S +D      +   P        Q   
Sbjct: 303 ---------------------------KNEQAASDADLEFNFGANVDPN------FQFAK 329

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           + P +  +YT I +  D+ Q  +KL ++   +F   T ++    ++ + I+ S       
Sbjct: 330 KQPRDLGNYTLIQDEDDLNQLAEKLGSLKEFAFDTETTSLTTLDAELVGISFS------- 382

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             F     F    V+ ++ +  + T  +     LK   EN    KIG N+KYD LVL  Y
Sbjct: 383 --FAPGEAFF---VYCAESALSRETAIR----VLKPILENPEIGKIGQNLKYDMLVLKNY 433

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535
           G+ ++    D ML SYVL+  ++ H++  +A   L   +    +++   KS   I ++  
Sbjct: 434 GVRVQPVRFDTMLASYVLNPDKT-HNLDDLAADHLGLETVKYADLVGKGKSEKSIYEVEP 492

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             + ++A ++++V LQL  +L   L   E L  + E L+ P++ V++ ME  G+++D  +
Sbjct: 493 KTLSDYACQDADVALQLKNVLEKALGENEPLKKICEELEFPLVGVLADMEHEGVRLDVAV 552

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK +S  +   L  + + IYD +GE FNL SPKQL +ILF KLK P+  +TKTG + T  
Sbjct: 553 LKTLSETLGTELGRVSKIIYDAAGEAFNLDSPKQLSEILFEKLKLPAKRRTKTG-YSTDV 611

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE++     P+ K ILE+R L K+KSTY D+LPN ++ +T R+HT ++     TGRL+
Sbjct: 612 RVLEEL-AESFPVAKQILEYRSLQKLKSTYVDALPNLVHPKTGRIHTSFNQHIAATGRLS 670

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQNIPI+T++G++IR AF+ S     L+SADYSQIELRI A ++    +   F+N
Sbjct: 671 SSNPNLQNIPIRTEIGREIRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPTMLGAFQN 730

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A  IF    ++V+  MRR AK +NF ++YGI PF LA +L I ++EA + I 
Sbjct: 731 REDIHSTTAKLIF--ETDEVTKDMRRKAKEVNFGVLYGIMPFGLAQRLDISQAEAKEIIS 788

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y  ++P I  Y+E   +  R +GYVET+ GRR +  ++NS   SIR+  ERAAIN PIQ
Sbjct: 789 QYKEKYPMIFSYLEGILDKARASGYVETLLGRRRYIRDLNSKNFSIRSAAERAAINTPIQ 848

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ ++AM+ +   +    L ++M+LQ+HDEL+F + E E+    +++   M +A  
Sbjct: 849 GTAADMIKKAMLGIASDIHKQSLRSRMILQVHDELLFNMHESEVDILPELVQREMIEAA- 907

Query: 954 PKINLR-VPLKVNIKVSNNWQE 974
             I +R VP++V +    NW E
Sbjct: 908 KAIGIRNVPIEVEVGTGANWIE 929


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 343/992 (34%), Positives = 532/992 (53%), Gaps = 97/992 (9%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYR++YA   +P ++ K  GL  +A+ GF N L ++L   R     +H 
Sbjct: 2   DKLFLLDAYALIYRSYYALLRSPRINSK--GLNTSAVLGFMNTLNEVLTKER----PTHI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD+   TFR+E +P YKA R + PE +   +P+++   +A+ IP +++ GFEADDII
Sbjct: 56  GVAFDH-GKTFRHEAFPQYKAQREETPEDIKLSVPIIKRILEAYRIPILQVDGFEADDII 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PE 177
            T      +EG A  +++ DKD  QLV+    +Y        E +  + V  K+GI  P 
Sbjct: 115 GTVATRFGREGVATYMLTPDKDYGQLVADNVYIYRPRHGGGYEVMGPKEVQAKYGIASPL 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V L AL GDS DN PG PG+G KTAA L+ E+G++                EN++  A
Sbjct: 175 QVVDLLALMGDSADNFPGCPGVGEKTAAKLIGEFGSV----------------ENLI--A 216

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            TA+L  KL   R  V   +       ED    + ++ ++          V T    D  
Sbjct: 217 NTAQLKGKL---REKVEGAV-------EDIKMSKFLATIR--------TDVPTDIRLDDL 258

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E      +  E K   I TE+         +F+S   +   +N  +  QK    +L  
Sbjct: 259 KVE------SPDEAKLDQIFTEL---------EFNSFRKRM--LNKAEKKQKTDNLQLDF 301

Query: 358 LSQYPINNDSYTKIVN---TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            ++ P +  S  +  N    K I    Q +ET   A         D F +  I     +L
Sbjct: 302 FAENPTDGPSVAENANFETLKTIPHEYQLIETEEEAR-----RLYDFFRTNKIL----SL 352

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEHFLKIGHN 468
           D +  ++  +E   + LS    +                +I++  K  +E+   LK+G N
Sbjct: 353 DTETTSTNAIEAELVGLSFAVEERKAFYVVIPANREEALKIVAIFKPLYEDPEILKVGQN 412

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
           IKYD  VL  YG+ + G   D M+  Y+L      H++  +A+ +L Y     +E++  R
Sbjct: 413 IKYDIEVLRHYGVEVAGPMFDTMIAHYLLQP-ELRHNMDYMAEVYLGYRTVHIEELIGPR 471

Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            ++   +  +S + + E+A E++++ L+L  +L PKL    +  ++  ++ P++ V++ M
Sbjct: 472 GRNQKNMRDLSPTDIYEYACEDADITLRLKNVLEPKLDEAGVARLFRDIEMPLVGVLADM 531

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSG 642
           E+ G+ +D + L + S   +K + ++E++IY+L+GE+FN+SSP+Q+GDILF K+K     
Sbjct: 532 ELNGVCLDTEALHETSEVFNKRMTAIEQHIYELAGEQFNISSPRQVGDILFGKMKIVDKP 591

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTGQ+ T+ + L+Q+    +PII  IL +R L K+ STY D+LP  IN RT R+HT 
Sbjct: 592 KKTKTGQFVTSEEVLQQLRS-KSPIIDEILNYRGLKKLLSTYVDALPKLINPRTGRIHTS 650

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++   T TGRL+S +PNLQNIP++ D G++IR+ FI  P     SADYSQIELRI+AH++
Sbjct: 651 FNQTVTATGRLSSSDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLS 710

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   + + F    DIH   AA I+  +I +V+P  R+ AK  NF IIYGI+ + LA ++ 
Sbjct: 711 EDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTYGLAQRMD 770

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I   EA D I  YF  FP +  Y+E+ K   R+ GY ET+F RR +  +INS  +++R  
Sbjct: 771 ISNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINSHNATVRGF 830

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAPIQGS ADI + AM+ +H+  +   + +KM+LQ+HDEL F V  EE     +
Sbjct: 831 AERNAINAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFPEEKEQVER 890

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I+V  M+ A      LRVPL  +     NW E
Sbjct: 891 IVVEEMQGA----YKLRVPLVADAGWGKNWLE 918


>gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
 gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
          Length = 885

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 345/981 (35%), Positives = 533/981 (54%), Gaps = 110/981 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N   ++DGSS  +RAFYA PLL  K  G+  NAI GF  ML    +N+ +    SH  V
Sbjct: 3   KNIFLIIDGSSLFFRAFYALPLLKTKR-GIYTNAIYGFVMML----ENAIERVKPSHIVV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E+Y DYK  R K P  L  Q PLVR   +   I  ++   +EADDI  T
Sbjct: 58  CFDRKGKTFRSELYKDYKGTRQKTPNELEQQFPLVRDILKYMNIVVLDSPVYEADDIAGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            + IA KEG+   +++ DKD  QLV   T +  T K     E ++++ +   +GI P++ 
Sbjct: 118 LSLIASKEGYKSYLLTGDKDYYQLVDDNTNVLMTRKGITELEVVNLQSINDDYGISPQEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GDS DNIPG+PGIG KT   L++EY  +EN+  + S I  KK +EN+ E    
Sbjct: 178 IDLKGLMGDSSDNIPGVPGIGPKTGLKLIKEYSTIENLYNHLSEISGKKLKENLEENKVQ 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S+KL                I+ + + P  +S LK  E+             D  N+
Sbjct: 238 AFMSKKL--------------GTIVRNIDLPVGLSDLKIKEY-------------DYENL 270

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             +  D                        +F+S+         ++ P+K   E+ +++S
Sbjct: 271 SKLYRDF-----------------------EFNSIL--------KRLPEKYQKEKTEEIS 299

Query: 360 Q--YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
              + I+NDS         I+  ++ ++T  S +FK I+D        P  IAI  L + 
Sbjct: 300 DTFFQISNDS---------IEDIIENIKTSKSFAFKFISDGKIYEGIDPFKIAI--LPKG 348

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            +TS       ID +              K+ LS LK  +E++   K+G+++K D +VL 
Sbjct: 349 YNTSV------IDYN--------------KDNLSNLKALWEDDSIEKLGYDLKEDIIVLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKI 533
              I ++ +  D M+  Y+L+S  S+++I  +A  + +   K   E+L          +I
Sbjct: 389 YNKIDLKNYCHDSMIAEYLLNSTESNYEIDHLASSYFNKAYKSEEELLGKGVKKKKFQEI 448

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +  +  +     N++ ++  L   K+  E +  +Y  ++ P+I+V++ MEI GI+ D +
Sbjct: 449 DEGDLNSYFSYILNMVYKISPLQMQKIEAEGMKDLYVNVELPLIEVLANMEIVGIRTDVN 508

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L ++  +I + +  LE NIY  + E+FN++SPKQLG ILF K+  P   KTKTG + T+
Sbjct: 509 ILNEIDEKIKERINDLEFNIYKDADEQFNINSPKQLGQILFEKMDLPVIKKTKTG-YSTS 567

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  LE++  G + II NILE+R++SKIK+TY D L + INK+T R+H+ ++   T TGR+
Sbjct: 568 ADVLEKLR-GKSLIIDNILEYRKISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGRI 626

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIPIKT  G+ IR+A +S     L+ +DYSQIELR+LA ++  T +   F +
Sbjct: 627 SSTEPNLQNIPIKTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFAD 686

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIHR  A+E+F    ++VS ++R  AK +NF I+YGIS + L+  L IPR EA  YI 
Sbjct: 687 GLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYGISDYGLSQNLNIPRKEAKTYID 746

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            Y   F GI +Y+    +   + GYVET+  RR +  E+ +   +IR+  ER A+N PIQ
Sbjct: 747 NYLGHFQGIKKYMNDIIHVGTEKGYVETLLHRRRYIPELKAKNFNIRSFGERIALNTPIQ 806

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM+ V+K L+   L  K++LQIHDELV + P+EE+    +I+   M+ A +
Sbjct: 807 GTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEEVAEVCEIMKDVMDNALI 866

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               ++VPL V++K   +  E
Sbjct: 867 ----MKVPLSVSMKTGKSLYE 883


>gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83]
 gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83]
          Length = 926

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 336/988 (34%), Positives = 526/988 (53%), Gaps = 86/988 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + I+RA+YA     R    G    A+ GF   L  +L+    E    H AV+
Sbjct: 4   RLFLLDAYALIFRAYYAFIRSPRIDSTGRDTGAVFGFALTLLDILEKESPE----HIAVV 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  +FR+  Y +YKA R + PE +   +PL++    AF IPA+E+  FEADD I T 
Sbjct: 60  FDPPGGSFRHREYAEYKAQREETPEGIRIAVPLIKEILAAFRIPAVEVPDFEADDTIGTL 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PEKMV 180
              AE++G AV +++ DKD  QLVS    +Y        E      V +K+G+  P +M+
Sbjct: 120 AKQAEEQGLAVRMVTPDKDFGQLVSERIKIYRPKSGGGYETWGPAEVCEKFGLSIPGQMI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS DNIPG  GIG KTA  LL EYG+++ I  +   +K    ++ I E  E  
Sbjct: 180 DYLGLVGDSSDNIPGCKGIGAKTAEKLLAEYGSIDGIYAHQDELKGAVAKK-IQEGEEQT 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R SR L  +RTD PI    E       +   +     ALEF  L+ R+ +T   DA    
Sbjct: 239 RFSRYLATIRTDAPIVFDSEAYRRTSPDMAAVRECFAALEFRTLLKRLEST-PTDAP--- 294

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER------ 354
                                      T  F+ +      + +++ P  LF E       
Sbjct: 295 --------------------------ATDLFAGM------VQAQEPPTDLFGEGTDATGL 322

Query: 355 -LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L+KL+  P     YT +   ++I   ++        SF   TD+ DA  +  +AI   T
Sbjct: 323 PLKKLTDVP---HEYTILKTEEEIADCIRMFSATPCFSFDTETDSKDALRANIVAI---T 376

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L  +   +F     FI L      +  GK  L       L+  F +    K+G N+KYD 
Sbjct: 377 LCAESGRAF-----FIPLP---EDEEIGKRRL-----DLLRPLFADTAIGKVGQNMKYDI 423

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
            VL RYGI +RG   D M+  Y+L      H++  +A+  L Y      +++ S K  + 
Sbjct: 424 QVLSRYGIEVRGQLFDTMIAHYLLFPDLR-HNMDEMAETLLGYCTVHYSDLVGSDKQEVH 482

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           I ++    + ++A+E++++  QL+  L   L    +  ++E ++ P++ V++ ME +G++
Sbjct: 483 IRQVPLQNLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIEMPLVPVLANMERSGVK 542

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTG 648
           +D ++L++ ++ + + +  +E+ IY L+G  FN++SP Q+G +LF +L+     K TK+G
Sbjct: 543 LDTEVLRRTASGLGEEMQRIEDEIYRLAGHSFNINSPSQVGTVLFEELQITEKPKKTKSG 602

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T  + L ++    +PI++ IL++R + K+ STY ++LP  +     ++HT ++    
Sbjct: 603 SYSTNEEILVKLQ-EKHPIVRLILDYRGIKKLLSTYVEALP-EMRYPDGKLHTSFNQTVA 660

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI--SADYSQIELRILAHIAKITP 766
            TGRL+S  PNLQNIPI+T++G+ +R AF+ P   + I  SADYSQIELR++AH+++   
Sbjct: 661 TTGRLSSSNPNLQNIPIRTEVGRGLRAAFV-PDNDECIFMSADYSQIELRLMAHLSEDES 719

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L Q F +  DIHR  A++I+ + + +V+  MRR AKT NF IIYGIS F L+ +L I R+
Sbjct: 720 LIQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRT 779

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA   I+ YF  +PG+  Y++++    ++ GYV T+FGR+    +INS  + +R   ER 
Sbjct: 780 EAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERN 839

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAAD+ + AMI +H+ + + KL ++M+LQ+HDEL F V   E     +++  
Sbjct: 840 AINAPIQGSAADLIKLAMIRIHEEITERKLRSRMILQVHDELNFNVLRPEAAEVRELVRS 899

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME   +P  +LRVPL   I    NW E
Sbjct: 900 CME-GVMP--SLRVPLIAEIGEGANWLE 924


>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
 gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
          Length = 915

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 329/986 (33%), Positives = 508/986 (51%), Gaps = 104/986 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDG    YRAF+A P       G P NA+ GF +ML   L++   + +   F V   
Sbjct: 12  IMLVDGHGLAYRAFHALPDTLATASGEPTNAVFGFTSMLLDALRSYHPDYVVVSFDV--- 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y  YKA+R  +P+ L  Q+  +     A  IP    +G+EADD+IAT   
Sbjct: 69  --GRTFRHDRYEAYKAHRAPMPDDLRRQMERIHEVLAALNIPVFTREGYEADDVIATLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPEKMVC 181
           +A +   +V +++ D DL+QL      +    ++        D E VI+++G PPE++  
Sbjct: 127 LAAERHMSVLVVTGDSDLLQLADGAVRIILPGRQRFGDYRVFDREAVIERYGFPPERIPE 186

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD+ DNIPG+PGIG KTA  L+Q Y +LE +  +   IK  + R ++ E+     
Sbjct: 187 YKALVGDTSDNIPGVPGIGAKTATALVQAYDSLEAMREHIDEIKPPRARASLAEH----- 241

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                            F +AL   +L                 
Sbjct: 242 ---------------------------------FEQALHGRELAT--------------- 253

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           VV DI+   +    +  + DRD  ++   F  L  +T  +N    P      R Q  +  
Sbjct: 254 VVRDIDLELDLDTCVLGDYDRDRVLEV--FRELEFRT-LVNRLPEPT-----RPQVTTAP 305

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P      T +     +   +++L +  + +  + T + D   ++ + IA++T  Q+   S
Sbjct: 306 PAPPAERTIVRFDNQLGDLLEELRSAPAIALDVETTSTDPMTARLVGIALATSGQR---S 362

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F V         H + D        +E LS L     + + +   H+ KYD LVL R G 
Sbjct: 363 FYVPV------NHANDDEQLDADEVREALSPL---LADPNTVVYAHHGKYDALVLERAGY 413

Query: 482 SM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQ 537
              R   D M+ +Y+L  G ++ D+ S+A   L     EI   +   ++ + +D      
Sbjct: 414 PRPRIAFDTMIAAYLL--GENALDLKSLAFNRLGMEMTEITTLIGRGRNQLTMDLTDVQA 471

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             ++A  +     +L  +L+P L  ++   ++  ++ P+IDV+  ME  GI +D DLL+ 
Sbjct: 472 AGDYACADVEATYRLVEVLQPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRD 531

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S +++  L  LE  IY L+  +FN++S +QL  +LF +L  P+G +TKTG +  + + L
Sbjct: 532 LSRQLTGQLAELEREIYGLAKHEFNINSTRQLATVLFDELGLPAGRRTKTG-YSVSQEVL 590

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +PI+  ILE+RQL K+KSTY D+LP  +N  T R+HT ++     TGRL+S +
Sbjct: 591 ENLRHA-HPIVDCILEYRQLLKLKSTYVDALPEQVNPETGRIHTSFNQTIAATGRLSSTD 649

Query: 718 PNLQNIPIKTDLGQKIRRAFIS---PPTKK------LISADYSQIELRILAHIAKITPLY 768
           PNLQNIP++T+LG+ +RRAFI+   P  +       L+SADYSQIELR++AH++    L 
Sbjct: 650 PNLQNIPVRTELGRSVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMAHLSGDERLV 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH   AA++FGV +E+V+P MRR AKT+NF I+YG+  + LA    + R +A
Sbjct: 710 HAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMYGMQAYGLARDTGMSRQDA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I RY  R PG+  ++E+TK    Q GYV ++FGRR +  +I+S   + R   ER AI
Sbjct: 770 QRFIDRYMARLPGVRAFLERTKRQALQQGYVTSMFGRRRYTPDIDSSNVNRRLAAERMAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N P+QGSAADI + AMI VH  +    L ++MLLQ+HDEL+FEVP  E+ T + + V  M
Sbjct: 830 NMPLQGSAADIMKIAMIRVHDEMRRRGLRSRMLLQVHDELLFEVPRSELRTMADLAVDVM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           EK     + L VPL V +    NW E
Sbjct: 890 EKV----VTLNVPLVVEVAAGANWDE 911


>gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
 gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
          Length = 926

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 336/988 (34%), Positives = 526/988 (53%), Gaps = 86/988 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + I+RA+YA     R    G    A+ GF   L  +L+    E    H AV+
Sbjct: 4   RLFLLDAYALIFRAYYAFIRSPRIDSTGRDTGAVFGFALTLLDILEKESPE----HIAVV 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  +FR+  Y +YKA R + PE +   +PL++    AF IPA+E+  FEADD I T 
Sbjct: 60  FDPPGGSFRHREYAEYKAQREETPEGIRIAVPLIKEMLAAFRIPAVEVPDFEADDTIGTL 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PEKMV 180
              AE++G AV +++ DKD  QLVS    +Y        E      V +K+G+  P +M+
Sbjct: 120 AKQAEEQGLAVRMVTPDKDFGQLVSERIKIYRPKSGGGYETWGPAEVCEKFGLSIPGQMI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS DNIPG  GIG KTA  LL EYG+++ I  +   +K    ++ I E  E  
Sbjct: 180 DYLGLVGDSSDNIPGCKGIGAKTAEKLLAEYGSIDGIYAHQDELKGAVAKK-IQEGEEQT 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R SR L  +RTD PI    E       +   +     ALEF  L+ R+ +T   DA    
Sbjct: 239 RFSRYLATIRTDAPIVFDSEAYRRTSPDMAAVRECFAALEFRTLLKRLEST-PADAP--- 294

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER------ 354
                                      T  F+ +      + +++ P  LF E       
Sbjct: 295 --------------------------ATDLFAGM------VQAQEPPTDLFGEGTDATGL 322

Query: 355 -LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L+KL+  P     YT +   ++I   ++   +    SF   TD+ DA  +  +AI   T
Sbjct: 323 PLKKLTDVP---HEYTILETEEEIADCIRMFSSTPCFSFDTETDSKDALRANIVAI---T 376

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L  +   +F     FI L      +  GK  L       L+  F +    K+G N+KYD 
Sbjct: 377 LCAESGRAF-----FIPLP---EDEEIGKRRL-----DLLRPLFADTAIGKVGQNMKYDI 423

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529
            VL RYGI +RG   D M+  Y+L      H++  +A+  L Y      +++ S K  + 
Sbjct: 424 QVLSRYGIEVRGQLFDTMIAHYLLFPDLR-HNMDEMAETLLGYRTIHYSDLVGSDKQEVH 482

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           I ++    + ++A+E++++  QL+  L   L    +  ++E ++ P++ V+  ME +G++
Sbjct: 483 IRQVPLQNLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIEMPLVPVLVDMERSGVK 542

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTG 648
           +D ++L++ ++ + + +  +E+ IY L+G  FN++SP Q+G +LF +L+     K TK+G
Sbjct: 543 LDTEVLRRTASRLGEEMQRIEDEIYRLAGHSFNINSPSQVGTVLFEELQITEKPKKTKSG 602

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T  + L ++    +PI++ IL++R + K+ STY ++LP  +     ++HT ++    
Sbjct: 603 SYSTNEEILVKLQ-EKHPIVRLILDYRGIKKLLSTYVEALP-EMRYPDGKLHTSFNQTVA 660

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI--SADYSQIELRILAHIAKITP 766
            TGRL+S  PNLQNIPI+T++G+ +R AF+ P   + I  SADYSQIELR++AH+++   
Sbjct: 661 TTGRLSSSNPNLQNIPIRTEVGRGLRAAFV-PDNDECIFMSADYSQIELRLMAHLSEDES 719

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L Q F +  DIHR  A++I+ + + +V+  MRR AKT NF IIYGIS F L+ +L I R+
Sbjct: 720 LIQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRT 779

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA   I+ YF  +PG+  Y++++    ++ GYV T+FGR+    +INS  + +R   ER 
Sbjct: 780 EAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERN 839

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAAD+ + AMI +H+ + + KL ++M+LQ+HDEL F V   E     +++  
Sbjct: 840 AINAPIQGSAADLIKLAMIRIHEEITERKLRSRMILQVHDELNFNVLRPEAAEVRELVRS 899

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME   +P  +LRVPL   I    NW E
Sbjct: 900 CME-GVMP--SLRVPLIAEIGEGANWLE 924


>gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824]
 gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824]
 gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
          Length = 871

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 325/979 (33%), Positives = 528/979 (53%), Gaps = 122/979 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA P L+   +GL  N I GF  ML K+    R E    +    F
Sbjct: 3   RLLVLDGNSLMNRAFYALPELTNA-EGLHTNGIYGFMTMLIKM----RDEIKPDYIVTTF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y DYKA R K+P  L  Q P+++   +   I   EI GFEADD+I T  
Sbjct: 58  DRKAPTFRHKEYEDYKAGRKKMPPELSEQFPVLKELLEKLAINIFEIDGFEADDLIGTLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A+++G  V I++ DKD +QL      +        ++E  D   +I+++G+ P + + 
Sbjct: 118 CFAKEKGIEVYIVTGDKDALQLADDNVKVVINKKGMTEKEIYDKNRMIEEFGVTPVQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD+ DNIPG+PGIG KTA  L+QEYG++EN+L N   IK KK +EN+  YAE A 
Sbjct: 178 VKGLMGDNSDNIPGVPGIGPKTAFKLIQEYGSVENVLDNIQNIKGKKIKENLENYAEQAV 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            S+KL  + T+VPI I +E +                        R   ++D + A    
Sbjct: 238 FSKKLATIMTNVPIEIDIEEI------------------------RSKESFDVEGAR--- 270

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                   ++  QF S+ ++   +N E       +E    + ++
Sbjct: 271 ----------------------HLLRRLQFKSIIEKIPSLNVEAEKSDFVVE-YNLIDEF 307

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASF--KIITDTMDAFHSKPIAIAISTLDQKDD 419
           P  ++ ++ I +T+    +     +IG+     KI  DT+                    
Sbjct: 308 PKFHELFSAIKDTEIYMSY-----SIGNGELYSKIYIDTI-------------------- 342

Query: 420 TSFKVE--TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              KVE  T  +DL     Q+        +++L  LK+FFEN+   KI H+ K    VL 
Sbjct: 343 -FMKVEEKTYIVDLKKIIEQNR-------EDVLKDLKEFFENKKIAKIIHDSKNMYTVLM 394

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           + GI +     D  +  Y+++  +  +++   A++ L       L    + I I ++   
Sbjct: 395 KNGIKIENLAFDTAIAEYLINPSKKEYNLKDAAEEMLLLD----LTGEDNDIKIKEVY-- 448

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
                      V+ +++  L+ K+    +  +Y +++ P+I+V+S ME  G +++++ L+
Sbjct: 449 -----------VMDKIYNKLKDKIKEYDMDELYYKVELPLIEVLSSMESEGFKVEKNKLQ 497

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q+  + +  +  +++ IY+++GE+FN+SSPKQLG ILF KL  P   KTKTG + T A+ 
Sbjct: 498 QIGDKFTVEIAKVKDEIYNMAGEEFNISSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEV 556

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++    +PII+ ++ +RQL+K+ STY + L   I+   +++H+ ++   T TGRL+S 
Sbjct: 557 LEKL-MDKHPIIEKVVYYRQLTKLYSTYVEGLKPVID-VDEKIHSSFNQTVTTTGRLSST 614

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPIK ++G++IR+ F+      +I SADYSQIELR+LAHIA    L   F++  
Sbjct: 615 EPNLQNIPIKNEMGREIRKVFVPENDNCIILSADYSQIELRVLAHIADDENLINAFKHHS 674

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+F V IE+V+ +MR +AK +NF I+YGIS F LA  +++ + EA +YI  Y
Sbjct: 675 DIHTKTASEVFRVPIEEVTSRMRSNAKAVNFGIVYGISDFSLAQDIKVSKKEAKEYIDTY 734

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+P + +Y+E      ++N YV TI  RR    EI S    ++   ER A+N PIQGS
Sbjct: 735 FERYPNVKKYLEDIVVTAKKNMYVNTIMNRRRIIPEIASSNKIVKGFGERLAMNTPIQGS 794

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + +M++V+  ++  KL ++++LQ+HDEL+  V ++E+    +++   ME+     
Sbjct: 795 AADLIKLSMVNVYSKIKQLKLKSRLILQVHDELILNVHKDELEKVKELVKLEMEEV---- 850

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L+VPL+V+I+  N W E
Sbjct: 851 MELKVPLEVDIESGNTWYE 869


>gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
 gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
          Length = 897

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 319/986 (32%), Positives = 523/986 (53%), Gaps = 106/986 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           K   L ++DG+S + RAFY    T LL+   DGL  NA+ GF N++ K ++    E    
Sbjct: 2   KRQKLMVIDGNSILNRAFYGLQGTNLLATS-DGLYTNAVFGFINIMNKYIE----EENPQ 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           +  V FD  A TFR++ +  YKANR  +P+ L  Q+P+++    A  I  +E++GFEADD
Sbjct: 57  YICVAFDLKAPTFRHKQFDGYKANRKGMPDELRVQVPVIKEVLDAMCIKRLEMEGFEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEHVIKKWG 173
           I+ + +  A+++   V II+ D+D +QL    T +          + E+ D   + +K+ 
Sbjct: 117 ILGSISLCAQEKDIDVIIITGDRDALQLAGKGTRIKIPKTKGGKTETEEYDYNTIREKYS 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P + + ++AL GD+ DNIPG+PG+G KTA  L++ Y +LEN+  N  +I +K  +E +
Sbjct: 177 IDPVQFIDVKALMGDTSDNIPGVPGVGEKTALDLIKTYNSLENLYDNLEQITKKGLKEKL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
             Y E A +S+ L  +  ++P     + L+  + + P+L    + LEF   I++      
Sbjct: 237 ETYKEQAFMSKNLAAIDRNMPFLCHFDELVRNEFDKPKLYELFRRLEFKSFIDKFGLRDS 296

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
               N               IAIETEI                                 
Sbjct: 297 QPCHNC--------------IAIETEI--------------------------------- 309

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                            I + + +    QK+      +F  + D +D F +K   + +S 
Sbjct: 310 -----------------IDDGQGVMDLKQKIHEAKEVAFYYLIDRIDKFTNKLAGLCVSI 352

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              K+ +S+     F++++   +++         E L   K  FE+    K GH++K   
Sbjct: 353 ---KEGSSY-----FLNINERLTEN---------EFLEGFKSIFEDGEIKKYGHDLKNFI 395

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIP 529
           + L + GI + G   D M+ +Y+++  R ++ I+ +A  +L+   K   E+    KS +P
Sbjct: 396 VYLKQNGIELNGVAFDTMIGAYIINPSRETYTISELAADFLNTNVKPIEEMAGKGKSFLP 455

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +   +++        +I +    +  KL     L++Y +++ P++ V++ ME  G +
Sbjct: 456 FGSMDVEELKNVVGLYPEIIYKAMKKIDDKLNENDQLNLYYKIELPLVRVLADMEFYGFK 515

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           I+ + L  +S ++ + +  L   IY+L+GE+FN++SPKQLG +LF KL+ P   KTKTG 
Sbjct: 516 ININELTVISRQLDEKINQLTLKIYELAGEEFNINSPKQLGVVLFEKLELPIIKKTKTG- 574

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A+ LE++    + I+ NILE+RQL K+KSTY + L   IN  T ++H+ ++   T+
Sbjct: 575 YSTDAEVLEEL-AEKHEIVSNILEYRQLVKLKSTYIEGLMAVINPHTGKIHSSFNQTVTV 633

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLY 768
           TGR++S EPNLQNIPIK ++G+ IR+AF+      KL+ ADYSQIELR+LAHI     + 
Sbjct: 634 TGRISSTEPNLQNIPIKLEMGRNIRKAFVPCDGNYKLVDADYSQIELRVLAHITDDENMI 693

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F N+ DIH   A+++FGV  E+V+  +R  AK +NF I+YGI  F L+  L I R EA
Sbjct: 694 GAFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAVNFGIVYGIGDFSLSKDLGITRKEA 753

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +YI  Y  ++  + +Y+       ++ G+V T+F RR +  E+ +   ++R+  ER A+
Sbjct: 754 RNYIDGYLDKYANVRKYMHDIVAQGKEFGFVTTMFNRRRYLPELKASNFNVRSFGERIAM 813

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AM+ VH  L   +L ++++LQ+HDEL+ E  E E+   + I+  SM
Sbjct: 814 NTPIQGSAADIIKIAMVMVHSELNRRQLKSRLILQVHDELIIEAHESELEEVTMILKESM 873

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A      L+VPL V++K  N+W E
Sbjct: 874 ENATA----LKVPLSVDVKSGNSWYE 895


>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
 gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
          Length = 892

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 331/982 (33%), Positives = 531/982 (54%), Gaps = 108/982 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +FL DG+  +YRAFYA     +   GL  NA+ G   ML K L+        +   V+  
Sbjct: 4   MFLFDGTGLVYRAFYAIDQSLQTSSGLHTNAVYGLTKMLIKFLKEHISIGKDACVFVLDS 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R +I   YKANRP  P++LL Q+P V     A GI  ++I+GFEADDIIAT + 
Sbjct: 64  KGGSKKRKDILETYKANRPSTPDLLLEQIPYVEELVDALGIKVLKIEGFEADDIIATLSK 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI------DIEHVIKKWGIPPEKMV 180
             E +   V II+ DKDL+QLVS    ++    E  I      D   VI+K+GI PE+  
Sbjct: 124 KFESDFEKVNIITGDKDLLQLVSDKVFVWRV--ERGITDLVLYDRNKVIEKYGIYPEQFK 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              +L GD IDNIPG+ GIG KTA  LL++Y +LEN+L N           N+L    T 
Sbjct: 182 DYLSLVGDQIDNIPGVKGIGKKTAVSLLKKYNSLENVLKNI----------NLL----TE 227

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +L R                  +LED          K++E  +LI      YD       
Sbjct: 228 KLRR------------------LLEDSKE----DLQKSIELVELI------YD------- 252

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V +D+   E     I    + D  +K  +    S    ++N +        E+L+K   
Sbjct: 253 -VPMDVEKDE----IIYRGYNPDKLLKVLKKYEFSSIIKELNLQ--------EKLEK--- 296

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + N   +++  +++E   + S    T ++D F +K + I+IST++ K   
Sbjct: 297 ------EYILVDNEDKLKKLAEEIEKYKTFSIDTETTSLDPFEAKLVGISISTMEGK--- 347

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I +S H    +  K+ + K    +LK+  + + +  +G N+K+D  +    G
Sbjct: 348 -----AYYIPVS-HFGAKNISKSLIDK----FLKQILQEKDYNIVGQNLKFDYEIFKSMG 397

Query: 481 IS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI-----DKI 533
            S  +  F D M+ +Y+L+      ++  ++ K+L Y      +    ++P+       +
Sbjct: 398 FSPNVPHF-DTMIAAYLLNPDEKRFNLEELSLKYLGYKMISFDELVNENVPLFGNDFSYV 456

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +  E++ E+++V  +++  L  K+   ++  ++  ++ P+IDV+S+ME+ G+  D++
Sbjct: 457 PLERAVEYSCEDADVTYRIFRKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEE 516

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            LK++S +  + +  ++E +++++GE FNL+S  Q+  ILF KL      KT TG++ T 
Sbjct: 517 YLKELSKKYQEKMDGIKEKVFEIAGETFNLNSSTQVAYILFEKLNIAPYKKTATGKFSTN 576

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+ LE++   ++ I K +LE+R+  K+KSTY DS+P  IN++T RVHT +    T TGRL
Sbjct: 577 AEVLEEL-SKEHEIAKLLLEYRKYQKLKSTYIDSIPLSINRKTNRVHTTFHQTGTSTGRL 635

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVF 771
           +S  PNLQN+P +++ G++IR+A + P  +   ++ ADYSQIELR+LAH++K   L + F
Sbjct: 636 SSSNPNLQNLPTRSEEGKEIRKA-VRPQRQDWWILGADYSQIELRVLAHVSKDENLLKAF 694

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ LDIH + AA+IFGV+   VS QMRR  K +NF+IIYG+SP+ L+ ++ +  SE    
Sbjct: 695 KDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFAIIYGVSPYGLSKRIGLSVSETKKI 754

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  + G+ EY+++ K+  R+ GYV T+FGRR +  ++ S   +     ER A+N P
Sbjct: 755 IDNYFRYYKGVFEYLKRMKDEARKKGYVTTLFGRRRYIPQLRSKNGNRVQEGERIAVNTP 814

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI++H  L+   L++KM+LQ+HDELVFEVP+ E+     I+   ME A
Sbjct: 815 IQGTAADIIKIAMINIHNRLKKENLSSKMILQVHDELVFEVPDNELEFVKDIVKDEMENA 874

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
               + L VPLKV++     W+
Sbjct: 875 ----VKLDVPLKVDVYCGKEWE 892


>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 880

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 332/987 (33%), Positives = 524/987 (53%), Gaps = 126/987 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +                
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLES---------------- 219

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                      +++ +G +L   L+  +   L+++   T   DA
Sbjct: 220 ---------------------------IDEVSGKKLKEKLEEFKDQALMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++  E +G   E  I      K   F++L ++  + +SE+  Q   LE + 
Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGE-DSEEAEQDQALEEI- 303

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                        K+    D+   +     + S S  ++    D +H +P+ +  S +++
Sbjct: 304 -------------KVETVTDVTSGI-----LVSPSAFVVEQIGDNYHEEPL-LGFSIVNE 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDK 473
                                  TG   + K+I       K++ EN+   K   + K   
Sbjct: 345 -----------------------TGSYFIPKDIAVESEVFKEWAENDEQKKWLFDSKRAV 381

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L   GI ++G E D +L +Y+++ G S  D+AS+A+ +    +S       K  K ++
Sbjct: 382 VALRWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAV 441

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P    S+  + EH +  +  I  L   L  +L     L ++E L+ P+  ++ +ME TG+
Sbjct: 442 P----SEDVLSEHLVRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGV 497

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D D LK++  E+   L   EE I++++GE FN++SPKQLG ILF K+  P   KTKTG
Sbjct: 498 KVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTG 557

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T+A  LE++    + I+  IL++RQ+ K++STY + L       + +VHT ++ A T
Sbjct: 558 -YSTSADVLEKL-ADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALT 615

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765
            TGRL+S +PNLQNIPI+ + G+KIR+AF+  P++K   + +ADYSQIELR+LAHI+K  
Sbjct: 616 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDQ 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F N +DIH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R
Sbjct: 674 NLIEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 733

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I +Y   F G+  Y+E +    +Q GYV T+  RR +  E+ S   +IR+  ER
Sbjct: 734 KEAGAFIDQYLESFQGVKAYMEDSVQDAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAER 793

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+FE P+EEI    +++ 
Sbjct: 794 TAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPQEEIEILEKLVP 853

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             ME A    + L VPLKV+     +W
Sbjct: 854 EVMEHA----LALDVPLKVDFASGPSW 876


>gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
          Length = 944

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 351/997 (35%), Positives = 537/997 (53%), Gaps = 105/997 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR----KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           K+  LFL+DG + +YR+FYA   L R      +G+P  AI GF + L K+ +  R +   
Sbjct: 26  KKPALFLLDGMAIVYRSFYA---LQRTGMTSQEGMPTGAIYGFASTLLKIFETYRPQ--- 79

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            + A +FD    TFR+++YP YKANR   PE L+ QL  +    +AF IP I+  G+EAD
Sbjct: 80  -YLAAVFDSKEKTFRHDLYPLYKANRQAPPEDLIMQLDAIFKLLEAFDIPLIKTPGYEAD 138

Query: 119 DIIAT----YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170
           D+I T    ++ + +     V I++ DKDL QLV     +    K     E +  + +I+
Sbjct: 139 DLIGTASRKFSPMCQ-----VYIVTPDKDLAQLVHEGVNILKPGKNQNELELLGKKEIIE 193

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           ++G+PPE  +    LTGD+ DNIPG  GIG KTA  LL +YG+L+NI  +   I   K R
Sbjct: 194 QFGVPPELFIPFLTLTGDTSDNIPGAKGIGPKTAISLLDQYGSLQNIYNHLDTI-SPKNR 252

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +++  +  T  L  +LV +RTD+ I + L+ L    C  P                    
Sbjct: 253 QSLEAFQPTLDLITQLVTIRTDLQIDVTLKELA---CGLP-------------------- 289

Query: 291 TYDCDAANIEPVV--LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
               D A + P++  L + T  ++ +A+  E+ +      S  + L ++ S    E+ P 
Sbjct: 290 ----DPAKLFPLLQKLGLKTISSRILALFGELQQ----APSATAPLHEEPSSPFHEEEPA 341

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
                      + P  N  Y +I     + + ++ L               DA H     
Sbjct: 342 ----------LRSPRENADYARIDTVDKLMELMESLH--------------DARH----- 372

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQD---STGKNTLTKE-ILSYLKKFFENEHFLK 464
           IA+ T     DT F+ E   I ++V T +    S  ++ L ++  +  LK   EN    K
Sbjct: 373 IAVDTETTSLDT-FEAELAGISIAVETGKARFISFAQSALDRDKTVEILKPLLENPSLPK 431

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEI 520
           IG N+KYD LVL +YGI +     D ML SYVL+     H++  +A   L Y   T  E+
Sbjct: 432 IGQNLKYDMLVLKKYGIELSPVAFDTMLASYVLNP-EEKHNLDDLAAHHLGYRTTTFDEL 490

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDV 579
           + + K+   I ++   ++ ++A +++++ LQL  + R KL  E +LL + E ++ P++ V
Sbjct: 491 VGTGKTKQHIFEVDPEKLSDYACQDADLALQLEGVFRKKLDGETELLWLCENIEFPLVTV 550

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME  GI ID   L++ S  + K L  L E IY  +G  FN+ SPKQL  ILF  L  
Sbjct: 551 LAEMEYAGICIDTHHLEKASERVKKELELLTETIYAAAGSAFNIDSPKQLAHILFDLLAL 610

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   +TKTG + T  + LE++     PI +++LE+R L K+KSTY D+LP  +N  T R+
Sbjct: 611 PPKKRTKTG-YSTNVEVLEEL-ATLFPIARDLLEYRSLQKLKSTYIDALPKMVNPLTGRL 668

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRIL 758
           HT ++   T TGRL+S  PNLQNIPI++ LG++IRRAFI S P   L+SADYSQIELRI 
Sbjct: 669 HTTFNQFITATGRLSSSNPNLQNIPIRSPLGKEIRRAFIPSTPENWLLSADYSQIELRIA 728

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           A I+    L + F N  DIH   A  IF  + ++++  MRR AK +NF ++YGI PF L+
Sbjct: 729 AEISGDPQLLEAFRNREDIHTATAKVIF--DTDEITSDMRRKAKEVNFGVLYGIMPFGLS 786

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L IP+ EA   I  Y  ++PG+ + +++     R+ GYV TI GRR +  ++NS  ++
Sbjct: 787 RRLNIPQKEAKAIIDTYISKYPGLFKALQEIIVTGREKGYVTTILGRRRYLADLNSRNTN 846

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           ++   ERAA+N PIQG+AADI + AM      +    + + MLLQ+HDEL+FE  + E  
Sbjct: 847 LKKAAERAAMNTPIQGTAADIIKCAMNLCSSRMRHLNMKSVMLLQVHDELLFETTDAEKE 906

Query: 939 TASQIIVHSMEKACLPKINLR-VPLKVNIKVSNNWQE 974
             S+++  +M  A + +  L+ VP+ V+  +  NW E
Sbjct: 907 PLSKLVEQAMIDAAI-RCGLKNVPVLVDTGIGKNWLE 942


>gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 885

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 343/981 (34%), Positives = 531/981 (54%), Gaps = 110/981 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N   ++DGSS  +RAFYA PLL  K  G+  NAI GF  ML    +N+ +    SH  V
Sbjct: 3   KNIFLIIDGSSLFFRAFYALPLLKTKR-GIYTNAIYGFVMML----ENAIERVKPSHIVV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E+Y DYK  R K P  L  Q PLVR   +   I  ++   +EADDI  T
Sbjct: 58  CFDRKGKTFRSELYKDYKGTRQKTPNELEQQFPLVRDILKYMNIVVLDSPVYEADDIAGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            + IA KEG+   +++ DKD  QLV   T +  T K     E ++++ +   +GI P++ 
Sbjct: 118 LSLIASKEGYKSYLLTGDKDYYQLVDDNTNVLMTRKGITELEVVNLQSINDDYGISPQEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GDS DNIPG+PGIG KT   L++EY  +EN+  + S I  KK +EN+ E    
Sbjct: 178 IDLKGLMGDSSDNIPGVPGIGPKTGLKLIKEYSTIENLYNHLSEISGKKLKENLEENKVQ 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S+KL                I+ + + P  +S LK  E+             D  N+
Sbjct: 238 AFMSKKL--------------GTIVRNIDLPVGLSDLKIKEY-------------DYENL 270

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             +  D                        +F+S+         ++ P+K   E+ ++++
Sbjct: 271 SKLYRDF-----------------------EFNSIL--------KRLPEKYQKEKTEEIA 299

Query: 360 Q--YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
              + I+NDS         I   ++ ++   S +FK I+D        P  IAI  L + 
Sbjct: 300 DTFFQISNDS---------IDDIIENIKASKSFAFKFISDGKIYEGIDPFKIAI--LPKG 348

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            +TS       ID +              K+ LS LK  +E++   K+G+++K D +VL 
Sbjct: 349 YNTSV------IDYN--------------KDNLSNLKALWEDDSIEKLGYDLKEDIIVLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKI 533
              I ++ +  D M+  Y+L+S  S+++I  +A  + +   K   E+L          +I
Sbjct: 389 YNKIDLKNYCHDSMIAEYLLNSTESNYEIDHLASSYFNKAYKSEEELLGKGVKKKKFQEI 448

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +  +  +     N++ ++  L   K+  E +  +Y  ++ P+I+V++ MEI GI+ D +
Sbjct: 449 DEGDLNSYFSYILNMVYKISPLQMQKIEAEGMKDLYINVELPLIEVLANMEIVGIRTDVN 508

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L ++  +I + +  LE NIY  + E+FN++SPKQLG ILF K+  P   KTKTG + T+
Sbjct: 509 ILNEIDEKIKERINDLEFNIYKDADEQFNINSPKQLGQILFEKMDLPVIKKTKTG-YSTS 567

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  LE++  G + II NILE+R++SKIK+TY D L + INK+T R+H+ ++   T TGR+
Sbjct: 568 ADVLEKLR-GKSLIIDNILEYRKISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGRI 626

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIPIKT  G+ IR+A +S     L+ +DYSQIELR+LA ++  T +   F +
Sbjct: 627 SSTEPNLQNIPIKTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFAD 686

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIHR  A+E+F    ++VS ++R  AK +NF I+YGIS + L+  L IPR EA  YI 
Sbjct: 687 GLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYGISDYGLSQNLNIPRKEAKTYID 746

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            Y   F GI +Y+    +   + GYVET+  RR +  E+ +   +IR+  ER A+N PIQ
Sbjct: 747 NYLGHFQGIKKYMNDIIHVGTEKGYVETLLHRRRYIPELKAKNFNIRSFGERIALNTPIQ 806

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM+ V+K L+   L  K++LQIHDELV + P+EE+    +I+   M+ A +
Sbjct: 807 GTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEEVAEVCEIMKDVMDNALI 866

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               ++VPL V++K   +  E
Sbjct: 867 ----MKVPLSVSMKTGKSLYE 883


>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
          Length = 880

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 338/987 (34%), Positives = 525/987 (53%), Gaps = 126/987 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +                   
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKL------------------- 216

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                            P +I       ++ +G +L   L+  +   L+++   T   DA
Sbjct: 217 -----------------PESI-------DEVSGKKLKEKLEEFKDQALMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++  E +G   E  I      K   F++L ++  + ++E        E+ Q
Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGEDSAEA-------EQDQ 298

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L    IN  + T +  T DI         + S S  ++    D +H +PI +  S +++
Sbjct: 299 SLED--INVKTVTDV--TSDI---------LVSPSAFVVEQIGDNYHEEPI-LGFSIVNE 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDK 473
                                  TG   + K+I       K++ EN+   K   + K   
Sbjct: 345 -----------------------TGAYFIPKDIAVESEVFKEWVENDEQKKWVFDSKRAV 381

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L   GI ++G E D +L +Y+++ G S  D+AS+A+ +    +S       K  K ++
Sbjct: 382 VALRWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAV 441

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P    S+  + EH    +  I  L   L  +L     L ++E L+ P+  ++ +ME TG+
Sbjct: 442 P----SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGV 497

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D D LK++  E+   L   EE I++++GE FN++SPKQLG ILF K+  P   KTKTG
Sbjct: 498 KVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTG 557

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T+A  LE++    + I+  IL++RQ+ K++STY + L       + +VHT ++ A T
Sbjct: 558 -YSTSADVLEKL-ADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALT 615

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765
            TGRL+S +PNLQNIPI+ + G+KIR+AF+  P++K   + +ADYSQIELR+LAHI+K  
Sbjct: 616 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F N +DIH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R
Sbjct: 674 NLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 733

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I RY   F G+  Y+E +    +Q GYV T+  RR +  E+ S   +IR+  ER
Sbjct: 734 KEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAER 793

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+FE P+EEI    +++ 
Sbjct: 794 TAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVP 853

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             ME A    + L VPLKV+     +W
Sbjct: 854 EVMEHA----LALDVPLKVDFASGPSW 876


>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
 gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
 gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
          Length = 880

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 338/987 (34%), Positives = 525/987 (53%), Gaps = 126/987 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++                E +LE 
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSV----------------EKLLES 219

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                      +++ +G +L   L+  +   L+++   T   DA
Sbjct: 220 ---------------------------IDEVSGKKLKEKLEEFKDQALMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++  E +G   E  I      K   F++L ++  + ++E        E+ Q
Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGEDSAEA-------EQDQ 298

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L    IN  + T +  T DI         + S S  ++    D +H +PI +  S +++
Sbjct: 299 SLED--INVKTVTDV--TSDI---------LVSPSAFVVEQIGDNYHEEPI-LGFSIVNE 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDK 473
                                  TG   + K+I       K++ EN+   K   + K   
Sbjct: 345 -----------------------TGAYFIPKDIAVESEVFKEWVENDEQKKWVFDSKRAV 381

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L   GI ++G E D +L +Y+++ G S  D+AS+A+ +    +S       K  K ++
Sbjct: 382 VALRWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAV 441

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P    S+  + EH    +  I  L   L  +L     L ++E L+ P+  ++ +ME TG+
Sbjct: 442 P----SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGV 497

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D D LK++  E+   L   EE I++++GE FN++SPKQLG ILF K+  P   KTKTG
Sbjct: 498 KVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTG 557

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T+A  LE++    + I+  IL++RQ+ K++STY + L       + +VHT ++ A T
Sbjct: 558 -YSTSADVLEKL-ADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALT 615

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765
            TGRL+S +PNLQNIPI+ + G+KIR+AF+  P++K   + +ADYSQIELR+LAHI+K  
Sbjct: 616 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F N +DIH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R
Sbjct: 674 NLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 733

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I RY   F G+  Y+E +    +Q GYV T+  RR +  E+ S   +IR+  ER
Sbjct: 734 KEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAER 793

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+FE P+EEI    +++ 
Sbjct: 794 TAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVP 853

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             ME A    + L VPLKV+     +W
Sbjct: 854 EVMEHA----LALDVPLKVDFASGPSW 876


>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 939

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 325/987 (32%), Positives = 523/987 (52%), Gaps = 72/987 (7%)

Query: 5   NHLFLV-DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N +F+V DGSS ++RAFYA PL+S    G+  NA+ GF  ML +L    R+E      AV
Sbjct: 3   NAVFMVIDGSSLLHRAFYALPLMSTSQ-GVHTNAVYGFLTMLERL----RREYQPDFLAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D   +T R + Y  YKA R   PE L PQ  L++    A+ IP  E +G+EADD+I  
Sbjct: 58  CLDKSRITHRTQRYEAYKAQRGATPEELRPQFGLLKEVLAAWRIPLFEEEGYEADDLIGA 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +A+K+G    I++ D+D  QL+SP   +  T K     E+ D E +  K G+ P ++
Sbjct: 118 LVCLAKKQGIDSLIVTGDRDAWQLISPGVEVLFTRKGISELERYDEEALKAKIGLTPRQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V  + L GD  DNIPG+PG+G K A  LL+++G+++++      +K  K +E +  + E 
Sbjct: 178 VDWKGLMGDPSDNIPGVPGVGEKRAFKLLEQFGDMDSLYERLDEVK-GKLKEKLATHREQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LSR+L  ++ ++P+    E       + P L    K LEF  L+  +      D A  
Sbjct: 237 AFLSRELATIQCNIPLEPDWEACRAASPDFPALRRLYKKLEFRSLLRHLPGDEGDDEAEG 296

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS--DQTSKINSEQTPQKLFLERLQK 357
             +       + + ++    +  D T       S +  D+     + +  Q + ++    
Sbjct: 297 GSL---FARQDEQAVSAVDPMGADGTAGGGVRCSAAEGDKPGDGQAVRPDQAVRID---- 349

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             + P+  + YT + +   I   + +L  IG A     T  + A+   P           
Sbjct: 350 -VEAPLTVE-YTAVEDGNAIGAMLTELMQIG-AEPGCRTAVLAAWEGSP----------- 395

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTK--------EILSYLKKFFENEHFLKIGHNI 469
              + K++ I +         + G++ L +           +  K F+ ++   K+  + 
Sbjct: 396 --RTGKLKQIVL---------AAGRDALLRLWVIDRPGAFFAATKPFWASKDHRKLFFDA 444

Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           K   L+  R    + G + D +L +Y+LD   + + +A  A  W+ +  K   ++ +S +
Sbjct: 445 KSLWLLARREDTVIEGIDGDGLLGAYLLDPLANRYSLARSAHDWIGW--KVDTEAGRSVL 502

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P          E     +  +  +  ++  +L  E L  +Y  ++ P+  ++  ME TGI
Sbjct: 503 P---------PEEGARAAAALFHMTPVMEARLGEEGLCALYRDVELPLAPILGAMEWTGI 553

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +++  +L++++ E+  ++  L+ +IYDL+GE FN++S +Q G ILF KL  P   +TKTG
Sbjct: 554 KVNPAVLQEMAGELGADIRRLQADIYDLAGESFNINSTQQFGKILFEKLGLPVIKRTKTG 613

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T  + LE++    +PI+  +LE+RQL K+KSTY + L   I+    R+HT ++ A T
Sbjct: 614 -YSTDVEVLEEL-ADRHPIVPKVLEYRQLMKLKSTYVEGLLPLIDGEDGRIHTSFNQAVT 671

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPL 767
            TGRL+S EPNLQNIP++ + G++IR+AF +P     L++ADYSQIELRILAH++     
Sbjct: 672 ATGRLSSTEPNLQNIPVRLEQGRRIRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSF 731

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F  + DIH   A+E+FGV +E V+ +MRR AK +NF I+YGIS F L+  L + R+E
Sbjct: 732 KDAFAKNQDIHTRTASEVFGVPMENVTSEMRRRAKAVNFGIVYGISDFGLSRDLGVLRAE 791

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+ G+  YI++     R+ GYV T+ GRR    ++       +N  ERAA
Sbjct: 792 ARQYIDGYFDRYSGVKGYIDEIIAEARRQGYVTTLLGRRRRLPDLFVKNKIRQNFGERAA 851

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N PIQG+AADI + AM+ +   L    L T+MLLQ+HDEL+FE P+EE++ A+ +I  +
Sbjct: 852 MNTPIQGTAADIIKAAMVRIPGLLAAKGLKTRMLLQVHDELIFEAPKEELSEAAALIRET 911

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME+     I L VPL V++K   NW E
Sbjct: 912 MEQT----IRLDVPLTVDVKTGPNWYE 934


>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
 gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
          Length = 880

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 338/987 (34%), Positives = 525/987 (53%), Gaps = 126/987 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++                E +LE 
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSV----------------EKLLES 219

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                      +++ +G +L   L+  +   L+++   T   DA
Sbjct: 220 ---------------------------IDEVSGKKLKEKLEEFKDQALMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++  E +G   E  I      K   F++L ++  + ++E        E+ Q
Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGEGSAEA-------EQDQ 298

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L    IN  + T +  T DI         + S S  ++    D +H +PI +  S +++
Sbjct: 299 SLED--INVKTVTDV--TSDI---------LVSPSAFVVEQIGDNYHEEPI-LGFSIVNE 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDK 473
                                  TG   + K+I       K++ EN+   K   + K   
Sbjct: 345 -----------------------TGAYFIPKDIAVESEVFKEWVENDDQKKWVFDSKRAV 381

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L   GI ++G E D +L +Y+++ G S  D+AS+A+ +    +S       K  K ++
Sbjct: 382 VALRWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAV 441

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P    S+  + EH    +  I  L   L  +L     L ++E L+ P+  ++ +ME TG+
Sbjct: 442 P----SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGV 497

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D D LK++  E+   L   EE I++++GE FN++SPKQLG ILF K+  P   KTKTG
Sbjct: 498 KVDVDRLKRMGEELGTKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTG 557

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T+A  LE++    + I+  IL++RQ+ K++STY + L       + +VHT ++ A T
Sbjct: 558 -YSTSADVLEKL-ADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALT 615

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765
            TGRL+S +PNLQNIPI+ + G+KIR+AF+  P++K   + +ADYSQIELR+LAHI+K  
Sbjct: 616 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F N +DIH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R
Sbjct: 674 NLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 733

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I RY   F G+  Y+E +    +Q GYV T+  RR +  E+ S   +IR+  ER
Sbjct: 734 KEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAER 793

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+FE P+EEI    +++ 
Sbjct: 794 TAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVP 853

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             ME A    + L VPLKV+     +W
Sbjct: 854 EVMEHA----LALDVPLKVDFASGPSW 876


>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
 gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
          Length = 943

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 341/989 (34%), Positives = 520/989 (52%), Gaps = 89/989 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q++  LFL+DG + +YR++YA      K  DG+P  AI GF + L K+ +    E    +
Sbjct: 26  QQKPGLFLIDGMALVYRSYYALQQAGMKTRDGIPTGAIHGFASALLKIFEVWHPE----Y 81

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+ +Y  YKANRP  PE L+ Q+  +     AF IP I++ G+EADD+
Sbjct: 82  LAVTFDSREKTFRHNLYEPYKANRPAPPEDLVRQIEAILELIDAFSIPLIKLPGYEADDL 141

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I +     EK+  ++ I++ DKDL QLV     +    K+    E      ++ ++G+ P
Sbjct: 142 IGSAVKRFEKQ-CSIYIVTPDKDLAQLVHEGVIMLKPSKKQNELEPFGPAEIMAQFGVEP 200

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+ + L  LTGD+ DNIPG  GIG KTAA LL +YG L+NI  N   +  K R  ++  +
Sbjct: 201 ERFIDLLTLTGDTSDNIPGAKGIGPKTAAALLLKYGTLDNIYRNIGELTPKTR-ASLEAF 259

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVATTYD 293
                L R+LV + +D+ + + LE L    C  P   R++ FL   E   +  R+ + + 
Sbjct: 260 QPQLDLIRQLVTIHSDIDLGLNLETLA---CKAPVQGRIMPFLGKYELKAVAVRLPSVF- 315

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                  P +L      + G   E E D           S                    
Sbjct: 316 -------PGML------SNGTPAEEERDEQENNNAPSLDS-------------------- 342

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                   P+    Y  I   + +++ V++LE   S +    T ++D F ++   I+ S 
Sbjct: 343 --------PLTGADYAIIDTPEGVEKLVRQLEQADSFAIDTETTSLDTFQAELAGISFS- 393

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYD 472
           L  K       E  FI           GK  L     L  LK   EN    K G N+KYD
Sbjct: 394 LKPK-------EARFIYF---------GKGGLDIGNTLERLKPVLENPDIRKTGQNLKYD 437

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSR-KSS 527
            LVL  YGIS+     D ML SYVLD     H++  +A + LS    T  E+     K  
Sbjct: 438 LLVLKNYGISLTPVAFDTMLASYVLDP-EEKHNLDDLAARHLSIRTTTFDELTAGEGKKR 496

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEIT 586
             I  +  +Q+ ++  +++++ L+L  +   KL+  ++LLH+   ++ P+++V++ ME  
Sbjct: 497 THILDVPSAQLSDYGCQDADIALRLQEVFEAKLLEDQRLLHLCRTIEFPLVEVLAGMEYQ 556

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI ID   L++ +  ++  +  L   I+  +G  FNL SPKQL  ILF  L  P+   TK
Sbjct: 557 GISIDTAHLEKTADLVNAQIGDLSRKIHAAAGTPFNLDSPKQLSGILFNTLGLPTKKTTK 616

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T  + LE++    +PII ++LE+R L K+K+TY D+LP  IN  T R+HT ++  
Sbjct: 617 TG-FSTNVEVLEEL-APLHPIIGDLLEYRSLQKLKTTYIDALPKMINPGTGRLHTSFNQH 674

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S  PNLQNIP++T  G++IRRAFI S P   ++SADYSQIELRI A I+   
Sbjct: 675 VTATGRLSSSNPNLQNIPVRTTAGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDE 734

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F N  DIHR  A  IF  + ++++  MRR AK +NF ++YGI P+ L+ +L IP+
Sbjct: 735 KLIEAFRNREDIHRATAKVIF--STDEITSDMRRKAKEVNFGVLYGIQPYGLSKRLNIPQ 792

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           SEA   I+ Y  ++PG+   + +     ++ GYV T+ GRR +  ++NS   +I+    R
Sbjct: 793 SEAKAIIETYTTKYPGLFHALLEIIEEGKRKGYVTTLLGRRRYIPDLNSRNGNIQKAAGR 852

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AA+N PIQG+AADI + AM    + ++ + + + MLLQ+HDEL+FE   EE    S+++ 
Sbjct: 853 AAMNTPIQGTAADIIKCAMNLCDRQIKKNNMNSVMLLQVHDELLFETTAEEKNRLSKLVE 912

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +M +A +     +VP++V+     NW E
Sbjct: 913 TAMIEAAVYCGLKKVPVEVDTGTGKNWLE 941


>gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 349/999 (34%), Positives = 536/999 (53%), Gaps = 86/999 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++ ++++D    IYR+++A    PL + K  G  ++AI GF    +K L +   E     
Sbjct: 2   KDTIYVLDAYGLIYRSYFAFISRPLTNSK--GENISAIFGF----FKSLHSIFTEYNPKL 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F    D    TFR+E+Y +YKA R K P+ L  Q+  +    + F +PA+   GFEADD+
Sbjct: 56  FVTALDSLTPTFRHEMYKEYKATRDKTPDDLHAQIDKIEEILKTFKLPAVRCNGFEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---EEKIDIEHVIKKWGIPPE 177
           IA+   +AEKEG    +IS DKDLMQLVS TT +    K    E  D E+V ++WG+ P 
Sbjct: 116 IASIAALAEKEGRECVVISGDKDLMQLVSKTTTMLKPGKIKAWEGFDAENVKEEWGVYPA 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            M+ L +L GDS DN+PGI G+G KTA  LL+EY  L+ I  N   +K    +  I E  
Sbjct: 176 GMLDLLSLIGDSADNVPGIKGVGPKTAVKLLEEYKTLDGIYANTGNLKGA-LKTKIEEGK 234

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT-YDCDA 296
           E+A  S++L+ LR DVP+                           K +N  +T+  D +A
Sbjct: 235 ESAYFSKELIRLRFDVPVE--------------------------KDLNAYSTSQMDYEA 268

Query: 297 AN---IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           A    I   + +I    ++ I  E ++ +    +TS   +L  +T     E + QK   E
Sbjct: 269 AARLFISEELPNIAKLYSEKIIAEKKLSKHEKDETSSKENLKQETGLF--ENSEQKTLPE 326

Query: 354 RL-QKLS-----QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
            L Q+L        P N   Y  +   +++ + V +    G A++   T + D  +++  
Sbjct: 327 MLPQELGTGEEISLPQNKGDYKLVDEAEELFKIVDEALKQGLAAYDCETTSEDPLNAEVC 386

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
             +++ L + +   F ++    +L      +   K    K+    + K F+++  L I H
Sbjct: 387 GFSLA-LKEGEAYYFPLKAPCPELG-----EEAPKLIAFKDAQRAVTKLFDSKMTL-IMH 439

Query: 468 NIKYD-------KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
           N K+D       KL     GIS   F D M+ +++LD  RSS+ +  +A+  L       
Sbjct: 440 NGKFDIQAALSSKLA---SGISANLF-DTMIAAWLLDPARSSYGMDKLAESILGVKTIRF 495

Query: 518 KEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
           K+++K+ +  S IP++     +   +A E++++  + +    P L    L  ++  L+ P
Sbjct: 496 KDLVKTGQNFSDIPLN-----EACPYAAEDADITFRFYKKFLPLLKKNNLEKLFFDLEMP 550

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI GI +  + L   S E+ K L   E++IY L G +FN++SPKQL ++LF 
Sbjct: 551 ITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCEKDIYRLVGHEFNIASPKQLQEVLFE 610

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           + K   G KTKTG + T    LE +   ++P+   IL++R L+K+KSTY D+LP   +K 
Sbjct: 611 ERKLTPGKKTKTG-YSTDTSVLENL-ASEDPVPAKILDYRALAKLKSTYTDTLPKMTDK- 667

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
             R+HT +    T TGRL+S +PNLQNIPI+ + G+KIR AF +   + LISADYSQIEL
Sbjct: 668 NGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYSQIEL 727

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
            ILAH++K   L + F   +D+H   A+ IF V+I+ VS  MRR AKTINF ++YG+S F
Sbjct: 728 VILAHLSKDQNLVEAFNKGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAF 787

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
           RLA+ LRIPR  A ++IK YF  + G+  ++ +      Q GYVET+ GRR +   INS 
Sbjct: 788 RLASSLRIPRKRADEFIKAYFATYSGVSGFMAQVCQEAEQRGYVETLMGRRRYLPAINSK 847

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
               +   ER A+N PIQG+AADI + AM+ V K+L+  KL   +LLQ+HDEL+ E  E 
Sbjct: 848 NKVEKAGAERIAVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAAES 907

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E      ++   ME      I L VPL+V+I+   +W E
Sbjct: 908 EREKVMSLVKEKMEGV----IKLSVPLRVSIESGMSWGE 942


>gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
 gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
          Length = 950

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 338/997 (33%), Positives = 530/997 (53%), Gaps = 80/997 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N + L+DGS +IYRA++A P L+    G PV  I G  NM+  LL   R      H  +
Sbjct: 6   DNPIILIDGSFYIYRAYHAYPPLTTS-TGYPVWVIYGVINMIRSLLIKYR----PIHMGI 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  TFRN+++  YK+NRP++PE L  Q+  +    +A GI A+ +   EADD+IAT
Sbjct: 61  VFDSPGKTFRNDLFKQYKSNRPQMPEDLCIQITPLNTIIKAMGITALSVPYVEADDVIAT 120

Query: 124 YT-YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            + + A+ +   V I + DKD+ Q+VS    L +T+    +D   + KK+G+ P  +   
Sbjct: 121 LSNFYAQLKNKTVLISTGDKDMAQIVSSNIILINTMSNIILDSLEIKKKFGVSPNLIADY 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEY 236
            AL GD  DNIPG+PGIG K A +LL   GNL+ +  N  +I        +  +  +++ 
Sbjct: 181 LALIGDRSDNIPGVPGIGIKNAKILLNNIGNLQTLYQNLHKISILNLRNSQSIKNTLIKN 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCD 295
            + A LS KL  ++ DVP+      L++++ +  +L    K  EF   ++ + A T+   
Sbjct: 241 KKLAFLSYKLATVKIDVPLNQSDYKLLIQNIDSQQLFLLFKKYEFNTWVSELQAGTWLKK 300

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N +      ++T+N  ++  + I    T   + + S                      
Sbjct: 301 YKNTKK-----SSTQNSQLSNTSLISNTITHTCNYYPSFPSSN----------------- 338

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                   NND    I N   +  W+++  T       I ++  D F    I I IST  
Sbjct: 339 --------NNDI---ISNISSLTNWIKQNNTHHCFILNIYSNNFDIFTPNIIGICISTY- 386

Query: 416 QKDDTSFKVETIFIDLSV-HTSQDSTGKNTLT-----KEILSYLKKFFENEHFLKIGHNI 469
               T   +   +I +++ HT       +T        E+LS LK   EN    KIGHN+
Sbjct: 387 ----TMNSMHNAYIPINIQHTLNIDNNNDTYQWYLNLTEVLSILKPILENIKIKKIGHNM 442

Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK-----------WLSYTR 517
           K+   +L ++ I + G   D++L  YVL    +  +I     K            +    
Sbjct: 443 KFIFSLLKQHNIHLSGPIFDVILELYVLYGTSNYQNIKRFLNKTTILDHIFKFQQIYNNN 502

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           K ++K     I ++    +Q+  +AI N + IL  W  ++      +L  ++  ++ P+I
Sbjct: 503 KYLIKKNIRDIQLESSCSTQL-IYAISNLHQIL--WTEIKQH---NELKKIFINIEIPLI 556

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+S++E  G+ ID+  L   S +++  L +L+   Y L+G  FNL SPKQL +IL+ + 
Sbjct: 557 SVLSRIEDYGVLIDKKFLYSHSIKLNSQLNNLKTQAYQLTGSSFNLDSPKQLQEILYNQE 616

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           K P   KT  G   T+ + L+++    + I K IL++R LSK+KSTY + L + INK++ 
Sbjct: 617 KLPIFKKTPHGAPSTSEEVLKKL-SKKHSIPKIILKYRSLSKLKSTYTNKLISMINKKSN 675

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+HT Y+   T TGRL+S  PNLQNIP +   G+KIR+AFI+P    +ISADYSQIELRI
Sbjct: 676 RIHTSYNQTRTSTGRLSSTNPNLQNIPNRNYDGRKIRQAFIAPENSLIISADYSQIELRI 735

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH+++   L   F    DIH   A+EIF  ++  V+ + R+ AKT+NF +IYG++ F L
Sbjct: 736 MAHLSRDLKLINDFLEEKDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLIYGMTAFGL 795

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           + QL +   EA  Y+ RYF R+PG+ +Y++  K++ ++NGYV T+ GR+++  +I S   
Sbjct: 796 SKQLSVTCQEAQKYVDRYFQRYPGVMQYMQYIKDYAKKNGYVSTLDGRKLYLPDIYSSNI 855

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           S +   ER+AINAP+QGSAADI +RAMIS+   L+   +   M++Q+HDELVFEV    +
Sbjct: 856 SQKKGAERSAINAPMQGSAADIIKRAMISIDSWLQTDNIPVHMIMQVHDELVFEVNNTFV 915

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             A + I   ME+  +    L VPLKV+I V  NW++
Sbjct: 916 DIAVKQIRKLMEECFI----LNVPLKVDIGVGKNWEQ 948


>gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
          Length = 880

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 338/986 (34%), Positives = 525/986 (53%), Gaps = 124/986 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++                E +LE 
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSV----------------EKLLES 219

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                      +++ +G +L   L+  +   L+++   T   DA
Sbjct: 220 ---------------------------IDEVSGKKLKEKLEEFKDQALMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++  E +G   E  I      K   F++L ++  + ++E        E+ Q
Sbjct: 253 ----PIEVSVSALEYQGFNREQVI---AIFKDLGFNTLLERLGEDSAEA-------EQDQ 298

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L    IN  + T +  T DI         + S S  ++    D +H +PI +  S +++
Sbjct: 299 SLED--INVKTVTDV--TSDI---------LVSPSAFVVEQIGDNYHEEPI-LGFSIVNE 344

Query: 417 KDDTSFKVETIFI--DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                      FI  D +V +                  K++ EN+   K   + K   +
Sbjct: 345 -------TGAYFIPKDTAVESE---------------VFKEWVENDDQKKWVFDSKRAVV 382

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIP 529
            L   GI ++G E D +L +Y+++ G S  D+AS+A+ +    +S       K  K ++P
Sbjct: 383 ALRWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAVP 442

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
               S+  + EH    +  I  L   L  +L     L ++E L+ P+  ++ +ME TG++
Sbjct: 443 ----SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVK 498

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D D LK++  E+   L   EE I++++GE FN++SPKQLG ILF K+  P   KTKTG 
Sbjct: 499 VDVDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTG- 557

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+A  LE++    + I+  IL++RQ+ K++STY + L       + +VHT ++ A T 
Sbjct: 558 YSTSADVLEKL-ADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQ 616

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITP 766
           TGRL+S +PNLQNIPI+ + G+KIR+AF+  P++K   + +ADYSQIELR+LAHI+K   
Sbjct: 617 TGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDEN 674

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F N +DIH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R 
Sbjct: 675 LIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRK 734

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  +I RY   F G+  Y+E +    +Q GYV T+  RR +  E+ S   +IR+  ER 
Sbjct: 735 EAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERT 794

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+FE P+EEI    +++  
Sbjct: 795 AMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPE 854

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972
            ME A    + L VPLKV+     +W
Sbjct: 855 VMEHA----LALDVPLKVDFASGPSW 876


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
          Length = 936

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 348/992 (35%), Positives = 530/992 (53%), Gaps = 80/992 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++ ++++D    IYR+++A    PL + K  G  V+AI GF    +K L +   E     
Sbjct: 2   KDTIYVLDAYGLIYRSYFAFISRPLTNSK--GENVSAIFGF----FKSLHSIFTEYNPKL 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F    D    TFR+E+Y +YKA R K P+ L  Q+  +    + F +P +   GFEADD+
Sbjct: 56  FVTALDSLTPTFRHEMYKEYKATRDKTPDDLHAQIDKIEEILKTFKLPTVRCNGFEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---EEKIDIEHVIKKWGIPPE 177
           IA+   +AEKEG    +IS DKDLMQLVS TT +    K    E  D E+V ++WG+ P+
Sbjct: 116 IASIAALAEKEGRECVVISGDKDLMQLVSKTTTMLKPGKIKAWEGFDAENVKEEWGVYPD 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            M+ L +L GDS DN+PGI G+G KTA  LL+EY +L+ I  N   +K    +  I E  
Sbjct: 176 GMLDLLSLIGDSADNVPGIKGVGPKTAVKLLEEYKSLDGIYANTGNLKGA-LKTKIEEGK 234

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCN---GPRLISFLKALEFTKLINRVATTYDC 294
           E+A  S++L+ LR DVP+   L        +     RL         ++ +  +A  Y  
Sbjct: 235 ESAYFSKELIRLRFDVPVEKDLNAYSTSQMDYEAAARLF-------ISEELPNIAKLYS- 286

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                E ++ + N   +K          +   +T  F + S+QTS    E  PQ+L    
Sbjct: 287 -----EKIIAEKNAPSSK---------ENLKQETGLFEN-SEQTS---PEMLPQELGTGE 328

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
              L   P N   Y  +   +++ + V +    G AS+   T + D  +++    +++ L
Sbjct: 329 EISL---PQNKGDYKLVDEAEELFKIVDEALKQGLASYDCETTSEDPLNAEVCGFSLA-L 384

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-- 472
            + +   F ++    +L      +   K    K+    + K F+++  L I HN K+D  
Sbjct: 385 KEGEAYYFPLKAPCPELG-----EEAPKLIAFKDAKKAVTKLFDSKMTL-IMHNGKFDIQ 438

Query: 473 -----KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
                KL     GIS   F D M+ +++LD  RSS+ +  +A+  L       K+++K  
Sbjct: 439 AALSSKLA---SGISANLF-DTMIAAWLLDPARSSYGMDKLAESILGVKTIRFKDLVKQG 494

Query: 525 K--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +  S IP+      +   +A E++++  + +    P L    L  ++  L+ P+  ++++
Sbjct: 495 QNFSDIPL-----KEACPYAAEDADITFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTE 549

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           MEI GI +  + L   S E+ K L   E++IY L G +FN++SPKQL ++LF + K   G
Sbjct: 550 MEIKGIFLKGEELTAYSKELGKELEDCEKDIYRLVGHEFNIASPKQLQEVLFEERKLTPG 609

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T    LE +   ++P+   IL++R L+K+KSTY D+LP   +K   R+HT 
Sbjct: 610 KKTKTG-YSTDTSVLENL-ASEDPVPAKILDYRALAKLKSTYTDTLPKMTDK-NGRIHTS 666

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           +    T TGRL+S +PNLQNIPI+ + G+KIR AF +   + LISADYSQIEL ILAH++
Sbjct: 667 FIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYSQIELVILAHLS 726

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   L + F   +D+H   A+ IF V+I+ VS  MRR AKTINF ++YG+S FRLA+ LR
Sbjct: 727 KDQNLVEAFNTGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAFRLASSLR 786

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR  A ++IK YF  + G+  ++        Q GYVET+ GRR +   INS     +  
Sbjct: 787 IPRKRADEFIKAYFATYSGVSGFMANVCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAG 846

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER A+N PIQG+AADI + AM+ V K+L+  KL   +LLQ+HDEL+ E  E E      
Sbjct: 847 AERIAVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAAESEREKVMS 906

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++   ME      I L VPL+V+I+   +W E
Sbjct: 907 LVKEKMEGV----IKLSVPLRVSIESGMSWGE 934


>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
 gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
          Length = 934

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 336/978 (34%), Positives = 526/978 (53%), Gaps = 82/978 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R  +G P  A+ G   ML +L +         + A +FD
Sbjct: 25  LLLVDGSSYLYRAFHAMPDL-RGPEGQPTGALYGMVAMLRRLREQYPVAKGYRYAACVFD 83

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN +Y  YKA RP +P  L+ Q+  +  A +  G P +E+ G EADD+I T   
Sbjct: 84  AKGPTFRNAMYDQYKAQRPPMPPDLVAQIEPIHQAVRLMGWPLLEVPGVEADDVIGTLAV 143

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G    + + DKD+ QLV+    L +T+  E +D   V +K+G+PP+++V    L 
Sbjct: 144 RAHAQGIRTLVSTGDKDMAQLVNDHITLVNTMSNEVLDPAGVQQKFGVPPDRIVDYLTLV 203

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYAETARLSR 244
           GD++DN+PG+  +G KTA   L EYG+L+ ++  A  +     K     L++  TAR   
Sbjct: 204 GDAVDNVPGVDKVGPKTAVKWLTEYGSLDALIEQAETVSGAAGKNLRAALDWLPTAR--- 260

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           KLV + TD              C+                ++  A  +D D   + P   
Sbjct: 261 KLVTIHTD--------------CD----------------LDGYAKAFDPD---LRPAPE 287

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D              +   T+    +FS+  +  ++  SEQ  +++ L     L   P  
Sbjct: 288 DAQAL----------LPFFTSNGMRRFSA--EMKAQTVSEQAARQVSL-----LDGAPAA 330

Query: 365 NDS----YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             S    Y  +++      W+ +++     +    TD++D   ++ + I++S        
Sbjct: 331 EKSAPGTYETVLDCDRFDAWLTRIDAAELTAIDTETDSLDPMRARLVGISLSVAPG---- 386

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E  ++ L+ H    +  +  +  E+L  L+ + EN    K+G N KYD+ V    G
Sbjct: 387 ----EAAYLPLA-HAYPGAPEQLPMA-EVLERLRPWLENADKPKLGQNAKYDRHVFANAG 440

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILKSRKSSIPIDKISD 535
           +++RG+  D +L SYV+++ +  H + S+  + L    + + +++      +I  D+++ 
Sbjct: 441 VTIRGYAHDTLLESYVIEAHKP-HSLDSLVSRHLGRDDTLSYEQVCGKGTKAITFDQVAL 499

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                ++ E++++ LQ+   L P++  +  L     L+  + +V+ ++E TG+ +D DLL
Sbjct: 500 DVATRYSGEDADLTLQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLL 559

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +  S E+   + +LE   ++L+G  FNL SPKQ+G+ILF +L+ P   KT +G   T  +
Sbjct: 560 RAQSGELGAKMQTLEAQAFELAGGAFNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEE 619

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ + IL+ R LSK+KSTY + LP  IN  T RVHT Y+ A  +TGRLAS
Sbjct: 620 VLEKL-AEDYPLPRVILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVAVTGRLAS 678

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++T  G++IR AFI+P    + S+DYSQIELRI+AH+++   L   F    
Sbjct: 679 NDPNLQNIPVRTAEGRRIREAFIAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGE 738

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAEIFGV   +VS   RR AK INF +IYG+S F LA  L + RS A  YI RY
Sbjct: 739 DIHRATAAEIFGVTPLEVSSDQRRMAKVINFGLIYGMSAFGLARNLGLERSAAQLYIDRY 798

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+  Y+E+T+    + GYVET+FGRR+   +I++     R   ERAAINAP+QG+
Sbjct: 799 FARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDIHA-SGPRRAAAERAAINAPMQGT 857

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI+V  +L   KL +++++Q+HDELV EVPEEE     + I   M       
Sbjct: 858 AADLIKMAMIAVDAALMREKLRSRVVMQVHDELVLEVPEEETHWVREHIPRLMAGVA--- 914

Query: 956 INLRVPLKVNIKVSNNWQ 973
             L VPL   + +  NW+
Sbjct: 915 -QLDVPLLAEMGLGANWE 931


>gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
          Length = 922

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 336/978 (34%), Positives = 526/978 (53%), Gaps = 82/978 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R  +G P  A+ G   ML +L +         + A +FD
Sbjct: 13  LLLVDGSSYLYRAFHAMPDL-RGPEGQPTGALYGMVAMLRRLREQYPVAKGYRYAACVFD 71

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN +Y  YKA RP +P  L+ Q+  +  A +  G P +E+ G EADD+I T   
Sbjct: 72  AKGPTFRNAMYDQYKAQRPPMPPDLVAQIEPIHQAVRLMGWPLLEVPGVEADDVIGTLAV 131

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G    + + DKD+ QLV+    L +T+  E +D   V +K+G+PP+++V    L 
Sbjct: 132 RAHAQGIRTLVSTGDKDMAQLVNDHITLVNTMSNEVLDPAGVQQKFGVPPDRIVDYLTLV 191

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYAETARLSR 244
           GD++DN+PG+  +G KTA   L EYG+L+ ++  A  +     K     L++  TAR   
Sbjct: 192 GDAVDNVPGVDKVGPKTAVKWLTEYGSLDALIEQAETVSGAAGKNLRAALDWLPTAR--- 248

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           KLV + TD              C+                ++  A  +D D   + P   
Sbjct: 249 KLVTIHTD--------------CD----------------LDGYAQAFDPD---LRPAPE 275

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D         A+     R+   + S     ++  ++  SEQ  +++ L     L   P  
Sbjct: 276 DAQ-------ALLPFFTRNGMRRFS-----AEMKAQTVSEQAARQVSL-----LDGAPAA 318

Query: 365 NDS----YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             S    Y  +++      W+ +++     +    TD++D   ++ I I++S        
Sbjct: 319 EKSAPGTYDTVLDWDRFDAWLTRIDAAELTAIDTETDSLDPMRARLIGISLSVTPG---- 374

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E  ++ L+ H    +  +  +  E+L  L+ + EN    K+G N KYD+ V    G
Sbjct: 375 ----EAAYLPLA-HAYPGAPEQLPMA-EVLERLRPWLENADKPKLGQNAKYDRHVFANAG 428

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILKSRKSSIPIDKISD 535
           +++RG+  D +L SYV+++ +  H + S+  + L    + + +++      +I  D+++ 
Sbjct: 429 VTIRGYAHDTLLESYVIEAHKP-HSLDSLVSRHLGRDDTLSYEQVCGKGAKAITFDQVAL 487

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                ++ E++++ LQ+   L P++  +  L     L+  + +V+ ++E TG+ +D DLL
Sbjct: 488 DVATRYSGEDADLTLQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLL 547

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +  S E+   + +LE   ++L+G  FNL SPKQ+G+ILF +L+ P   KT +G   T  +
Sbjct: 548 RAQSGELGAKMQTLEAQAFELAGGAFNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEE 607

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ + IL+ R LSK+KSTY + LP  IN  T RVHT Y+ A  +TGRLAS
Sbjct: 608 VLEKL-AEDYPLPRVILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVAVTGRLAS 666

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++T  G++IR AF++P    + S+DYSQIELRI+AH+++   L   F    
Sbjct: 667 NDPNLQNIPVRTAEGRRIREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGE 726

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAEIFGV   +VS   RR AK INF +IYG+S F LA  L + RS A  YI RY
Sbjct: 727 DIHRATAAEIFGVTSLEVSSDQRRMAKVINFGLIYGMSAFGLARNLGLERSAAQLYIDRY 786

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+  Y+E+T+    + GYVET+FGRR+   +I++     R   ERAAINAP+QG+
Sbjct: 787 FARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDIHA-SGPRRAAAERAAINAPMQGT 845

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI+V  +L   KL +++++Q+HDELV EVPEEE     + I   M       
Sbjct: 846 AADLIKMAMIAVDAALVREKLRSRVVMQVHDELVLEVPEEETHWVREHIPRLMAGVA--- 902

Query: 956 INLRVPLKVNIKVSNNWQ 973
             L VPL   + +  NW+
Sbjct: 903 -QLDVPLLAEMGLGANWE 919


>gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
 gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
          Length = 936

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/623 (40%), Positives = 384/623 (61%), Gaps = 24/623 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + D Y  + +   +Q WV ++   G  +    T  +D      + I++           
Sbjct: 325 FDKDKYECVRDAAALQVWVDRIRERGRVAVDTETTGLDEMVVDLVGISLCVE-------- 376

Query: 423 KVETIFIDLSVHTSQD--------STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             E  +I L+     D        S G+  L +E ++ LK   E+   LKIG N+KYD  
Sbjct: 377 AGEACYIPLAHKAGGDDLFGGEGLSEGQMPL-EEAVAMLKDVLEDPAVLKIGQNMKYDAK 435

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           +LHRYG+ +   +D MLMSY L +G   H + ++++++L +T    K +L S KS++  D
Sbjct: 436 ILHRYGVDVAPIDDTMLMSYALHAGLHGHGMDTLSERYLDHTPIPIKPLLGSGKSAVTFD 495

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           ++       +A E++++ L+LW   +P+L  E++  VYE L++P++ V+++ME  GI++D
Sbjct: 496 RVPIEDAVPYAAEDADITLRLWQTFKPQLHQERVTTVYETLERPLVPVLAEMERNGIKVD 555

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +D L ++S   ++ +  LE  I++L+GE FN+ SP QLG+ILF K+    G + K G++ 
Sbjct: 556 RDTLSRMSNAFAQKMAGLEAEIHELAGETFNVGSPAQLGEILFDKMGLEGGKRGKNGKYS 615

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE +   ++ + + +L+WRQLSK+KSTY D+L +HINK T RVHT Y+     TG
Sbjct: 616 TGADILEDLAT-EHDLPRRVLDWRQLSKLKSTYTDALQDHINKDTGRVHTSYAQTGASTG 674

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R+AS +PNLQNIP++++ G++IR AF++     L+S DYSQIELRILAH+A I  L Q F
Sbjct: 675 RMASTDPNLQNIPVRSEEGRRIREAFVAEEGNVLLSLDYSQIELRILAHMAGIETLQQAF 734

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH + A+E+FGV +E+++P++RR AK INF +IYGIS F LA  LRIPR +A  +
Sbjct: 735 AEGQDIHALTASEMFGVPLEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRKDAQGF 794

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF RFPGI +Y++ T  F +++GYV+T+FGR+IH  EIN+ K       +RAAINAP
Sbjct: 795 IDRYFERFPGIRKYMDSTVEFAKEHGYVQTLFGRKIHTAEINA-KGPKAGFAKRAAINAP 853

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AAD+ RRAMI + +++    L  +MLLQ+HDEL+FEVPE  +          ME A
Sbjct: 854 IQGTAADVIRRAMIRMPEAIA--HLPARMLLQVHDELLFEVPEAAVEDTIAAAREVMENA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
             P ++L V L V+     NW E
Sbjct: 912 ADPAVHLDVKLVVDAGRGKNWAE 934



 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/287 (50%), Positives = 203/287 (70%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++     +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+  ++FRNE+Y  YKANRP  PE L+PQ PL R AT+AF I   E++G+EADDIIA
Sbjct: 68  VIFDHSGMSFRNEMYDQYKANRPPAPEDLVPQFPLTREATKAFNIACKEVEGYEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTIIS+DKDLMQLV     + D +K ++ID + V++K+G+ P+++V +
Sbjct: 128 TLACQAREAGGQVTIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVVEKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRR+ ++E  E   L
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAEEIKQPKRRQTLIEMREQIEL 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           S+KLV L  D+ +   L+ L + + +   L++FL  +EF  L  R+A
Sbjct: 248 SKKLVQLDCDMELDFTLDDLEVMEPDAETLMTFLTEMEFRTLSKRMA 294


>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 984

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 358/1026 (34%), Positives = 540/1026 (52%), Gaps = 118/1026 (11%)

Query: 4   ENHLF-LVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           E  LF LVDG S  +R++YA         R   G+P +   GF   L +++ + + +++A
Sbjct: 20  EKPLFILVDGHSLAFRSYYAFAKGRDGGLRTKSGIPTSVCFGFLKSLLEVISSQQPQAMA 79

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
               V FD    TFR++    YKA+RP+ PE  +P L  ++    A  +P + + G+EAD
Sbjct: 80  ----VTFDLELPTFRHKADDTYKADRPETPEDFIPDLQNLKELLTALNLPVLAVPGYEAD 135

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKE---------EKIDIE 166
           D++AT  + A  EG+ V I++ D+DL QL+ P    T LY + K          E+   +
Sbjct: 136 DVLATLAHRATDEGYQVKILTGDRDLFQLIDPQKSITVLYLSHKALKSGSSTGLEEYSTQ 195

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V  K GI PE++V  +AL GD  DNIPG+ GIG KTA  LL ++G+LE I  +  +IK 
Sbjct: 196 GVKNKLGITPEQVVDYKALCGDKSDNIPGVRGIGEKTAVKLLNDFGSLEGIYASLDQIKG 255

Query: 227 KKRRENILEYA-ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
             + +  LE   + A  S+ L  L  D P+ + L+   LE  +   L  FL+ LEF   +
Sbjct: 256 AVKTK--LETGKQDAEHSKYLAQLAFDAPVDVELKAGKLEGFDTSVLKPFLQKLEFEFFL 313

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
            ++         N   VV D  T  +  +        D +   S +++  D+T       
Sbjct: 314 KKIDEIQQRFGGN---VVEDTGTESDPSV-------EDNSPDLSFWTA--DETEDYQK-- 359

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT----MD 400
                     Q  +  PI      +I++TKD + Q V  LE   +    +  DT    + 
Sbjct: 360 ----------QAAASCPIQ----PRIIDTKDKLDQLVDILENCTNIETPVAWDTETSDLK 405

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
             +++ + I      +  DT++        + +  +Q   G+N   + +L  L+   E +
Sbjct: 406 PRNAELVGIGCCWGLEATDTAY--------IPIAHNQ---GQNLDQQTVLEALRPILERD 454

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
            + K+  N+K+D+LVL   GI + G   D ML SYVL+   +SH++ S+ +++    +  
Sbjct: 455 RYPKVLQNVKFDRLVLRTQGIKLAGVVMDTMLASYVLNPD-NSHNLNSLTERYFPQIQ-- 511

Query: 520 ILKSRKS-SIP----IDKISDSQVQEHAIENSNVILQLWLLLRPKL----IVEKLLHVYE 570
            LKS K   IP    I ++S   V  +         +L   LR KL     +EKLL    
Sbjct: 512 -LKSYKDLKIPKGKTIAELSSKTVANYCGMQVYATFKLVPKLREKLEAIPAIEKLLL--- 567

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            +++P+  V++QME  GI+ID   LK++S  + K L+ +E+N Y  +GE+FNL SPKQL 
Sbjct: 568 EVEQPLEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQNAYKQAGEEFNLGSPKQLS 627

Query: 631 DILFTKLKFP--SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           ++LF KL        K KTG + T    LE++  GD+P+I  ILE R LSK+KSTY D+L
Sbjct: 628 ELLFEKLNLDRRKSRKMKTG-YSTDHATLEKLQ-GDHPVIDTILEHRTLSKLKSTYVDAL 685

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  ++K TQR+HT ++   T TGRL+S  PNLQNIPI+T   ++IR+AF+      L+SA
Sbjct: 686 PKLVHKDTQRIHTDFNQTITSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLLVSA 745

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRILAH+++   L + + N+ DIH + A  +F    E V+P+ RR  KTINF +
Sbjct: 746 DYSQIELRILAHLSQEPVLVETYRNNQDIHAVTAKLLF--EKETVTPEERRLGKTINFGV 803

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+ P R A +  +  +E  ++I R   R+P +  Y+E+ K      GYVETI GRR  
Sbjct: 804 IYGMGPQRFAREAGVSAAEGKEFIDRLKQRYPKVFGYLEQMKGDAIAKGYVETILGRR-R 862

Query: 869 YDEINSPK--------------SSIRNINE------RAAINAPIQGSAADITRRAMISVH 908
           Y E NS +                 + I +      RAA NAPIQGS+ADI + AM+ +H
Sbjct: 863 YFEFNSNRLRDAKGKNPQEIDLDEFKGIGQYDSGLLRAAANAPIQGSSADIIKIAMVKMH 922

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           + L+D++   ++LLQ+HDELVFEVP +E       I  +ME A    + L VPL V++  
Sbjct: 923 EVLQDYQ--ARLLLQVHDELVFEVPPDEWEELQPKIRETMESA----VELTVPLVVDVSE 976

Query: 969 SNNWQE 974
             NW E
Sbjct: 977 GENWME 982


>gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of
           Bemisia tabaci]
          Length = 939

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 338/981 (34%), Positives = 529/981 (53%), Gaps = 73/981 (7%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           LFL+DG S IYRA +A     +    GL   AI GF N L  LL+  +     +H  V F
Sbjct: 8   LFLLDGMSLIYRAHFALGKAATTTAQGLKTGAILGFVNTLVALLEKEKP----THLIVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ ++P YK++RP  PE +   +P ++   + FGI AI   G+EADD++ T  
Sbjct: 64  DGKEKTFRHALFPAYKSHRPVQPEEISIAIPYIKSILEGFGILAITYSGYEADDLLGTLA 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDI---EHVIKKWGIP-PEKMV 180
             A   G    I+STDKDL Q+V     LY  +   EK  I   + ++ +W I  PE++ 
Sbjct: 124 KKAAVMGCRTYIMSTDKDLAQIVGDNIYLYKPSSYGEKSTILGEKEILAQWEIARPEQVR 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  D IPGIP IG KTA  L++E+ NLENIL + S +   K + N+++YA+  
Sbjct: 184 DILALEGDPSDFIPGIPSIGKKTARKLIKEFDNLENILAH-SHMLTGKLKANLIQYADQG 242

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS++L  +RT+VPIT+ LE    +  N  +L      LEF +L  R+    + + A  +
Sbjct: 243 ILSKELATIRTNVPITLDLEKCHYQGPNKVKLEPIFSLLEFKQLKQRLFGKPNPEKATNQ 302

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV L                D    +  SQ ++ S+               L+R    ++
Sbjct: 303 PVGL---------------FDGINPMAKSQENNHSNGHG------------LDRQPHTTE 335

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                D+Y  I      ++ ++KLE+    +F I T  MD   +  + IA +    +  T
Sbjct: 336 GQHEQDAYALIETLPACEKLLEKLESATKWAFDIATTGMDPHLADLLGIAFA---YQPGT 392

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           ++     +I L  + +          +  L+ L+  F+    LK+GHN+K   +V+ R+G
Sbjct: 393 AY-----YIALPPNKAA--------AQPFLALLQPLFQRTDVLKVGHNLKNALIVMQRHG 439

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +S+       ++++ L +    H + ++++++L++  +  LK    +   +K S+  ++ 
Sbjct: 440 LSIAPPLFDTMIAHGLVAADMDHHLTTLSEQYLNH--RSYLKPPNRA---EKESEG-IKN 493

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E ++++L ++  +   L   K+  ++ R++ P++ V+  ME+ G+ ID   L  + +
Sbjct: 494 YAGEGADLVLHIYPKIAQALREHKVATLFYRVEMPLVQVLVAMELAGVSIDLPFLATLGS 553

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTAQDLEQ 659
           E+     +L+E IY L+   FN+ SPKQLG +LF KL   +   KTK GQ+ T    L +
Sbjct: 554 EMEPTTKALKEKIYTLAQTTFNIDSPKQLGVVLFEKLALHTKPMKTKGGQYATGEAILAK 613

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           ++   +PI+  I+E+R   K++STY D+LP  ++   QR+H  Y      TGRL++  PN
Sbjct: 614 LS-KVHPIVPLIMEYRTWQKLRSTYVDALPTLLHPIDQRLHATYHQTVVTTGRLSATGPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLD 776
           LQ IPI+T  G+ +R+AFI  P +K   L SADYSQIELRI+A  A+ T +   F++  D
Sbjct: 673 LQQIPIRTPTGRALRKAFI--PHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSDQD 730

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKRY 835
           IH++ A ++F   I  V  +MR+ AK  NF IIYGISPF L+ ++  + R EAA+ I+ Y
Sbjct: 731 IHQITAQKLFKTVI--VDQEMRQKAKIANFGIIYGISPFGLSERMEHLSRKEAAELIEAY 788

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  FPGI  YI+ +      NGYV T+ GR+    ++ +   + R +  R AIN PIQGS
Sbjct: 789 FEAFPGIKTYIDDSIAHAEANGYVRTLLGRKRFLPDLYASNPTTRGVARRNAINTPIQGS 848

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AA++ + AMI +   LE HKL+TK+++Q+HDELVF VP  EI      I   M  A LP 
Sbjct: 849 AAEMIKLAMIHIQDWLEKHKLSTKLIIQVHDELVFNVPRSEIADIQHHIPLLMATA-LPL 907

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
            N  VP+KVN  +  NW E +
Sbjct: 908 EN--VPIKVNWNIGANWLEAH 926


>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
 gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
          Length = 881

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 342/965 (35%), Positives = 509/965 (52%), Gaps = 120/965 (12%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLAT 102
           ML KL  + +     ++F V+FD    TFR+++YP YKA+RP +P+ L  Q+ PL RL  
Sbjct: 1   MLAKLYDDHQP----AYFGVVFDAKGKTFRHDLYPAYKAHRPPMPDDLRVQIEPLHRL-I 55

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEE 161
           +A G P I   G EADD+I T    A  E + V I S DKD+ QL++     L DT+K  
Sbjct: 56  EALGFPLIIEPGVEADDVIGTLAMQALSEHYQVVISSGDKDMAQLLTHADITLLDTMKNA 115

Query: 162 KIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
                ++ +++    +  ++++   AL GDS DNIPG+  +G KTAA  L EY  ++N++
Sbjct: 116 VTTTANIAERFKVDALRADQVIDFLALVGDSADNIPGVAKVGPKTAAKWLAEYQTIDNLI 175

Query: 219 INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
            +AS+I  K   +N+    +T RLS+ L  + T + +   +  L L+    PR    L A
Sbjct: 176 DHASKIPGKI-GDNLRAGIDTLRLSQTLATINTTLDLNTRIADLALQ----PRQPDKLAA 230

Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
           L           TY+   ANI+   L  +        + T     TT+   +  +L    
Sbjct: 231 L---------CDTYEL--ANIKAQYLKNSAPPPPAAPVATHYRAITTL--DELDAL---- 273

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
                        + RLQ       N+D Y   ++T+                    TD+
Sbjct: 274 -------------INRLQ-------NSDGYA--IDTE--------------------TDS 291

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           +D   +  + I+++            E  ++ L+   S +     TLT+     LK   E
Sbjct: 292 LDYMRANLVGISVA--------PAPGEAYYLPLAHQLSANLPYAETLTR-----LKPLLE 338

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-- 515
                K G + KYD+ +  R GI +RG  +D MLMSY +DS  + H++  +A  +L++  
Sbjct: 339 ASAPPKSGQHHKYDRHIFARAGIELRGIKDDTMLMSYTIDSTATRHNLDDLADYYLNHQT 398

Query: 516 -TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLD 573
            T ++I       +  D+I       +A E++++ L+L   L PKL  V +L  +Y  L+
Sbjct: 399 TTFEDIAGKGAKQLTFDQIPLETATAYACEDADITLRLKNHLAPKLAAVPQLDALYRELE 458

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+ +++ ++E TG++ID   L   SAEIS  L +LE   + L+G  FNL SPKQL +IL
Sbjct: 459 MPLAELLYKIEATGVRIDPAALAAQSAEISGQLAALEHAAHTLAGSPFNLGSPKQLQEIL 518

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           + +L  P   KT  GQ  T  + L ++       + + ILE R L+K+K+TY D LP  I
Sbjct: 519 YDQLGLPVLRKTPKGQPSTNEEVLAELAESHGAELPRLILEHRGLAKLKTTYTDRLPELI 578

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N  T R+HT Y  A T TGRL+S +PNLQNIP++++ G++IRRAFI+    ++++ADYSQ
Sbjct: 579 NPHTGRIHTSYHQAVTSTGRLSSSDPNLQNIPVRSEAGRRIRRAFIAEDGWQILAADYSQ 638

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH++    L   F    DIHR  AAEIFGV  E VS + RR AK INF +IYG+
Sbjct: 639 IELRIMAHLSADPGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGM 698

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA QL IPR +AADYI  YF R+P + +Y++ T+    + GYVET+ GRR++  +I
Sbjct: 699 SAFGLARQLNIPRGQAADYIDTYFARYPKVRDYMDATREAAHKQGYVETLLGRRLYLPDI 758

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL---------------A 917
           NS     R  +ER AINAP+QGSAADI +RAM+++ + LE   L               A
Sbjct: 759 NSKNPQRRQASERLAINAPMQGSAADIIKRAMLAIDRELELSPLPGAGGTHNTNPLPREA 818

Query: 918 T--------KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
           T        ++++Q+HDELVFE+  +     +  IV  ME A    + L VPL V   + 
Sbjct: 819 TAAKNRDDLRLIMQVHDELVFEIRPQAAAELTPRIVALMENA----MTLSVPLIVETGLG 874

Query: 970 NNWQE 974
            NW E
Sbjct: 875 ANWDE 879


>gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
 gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
          Length = 936

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 334/996 (33%), Positives = 525/996 (52%), Gaps = 97/996 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG +  YRAF+A      R   G P  A+ GF  +L   L   R + +A  F V  
Sbjct: 6   LILVDGHALAYRAFFALRESGLRSSRGEPTYAVFGFAQILLTALAEYRPDYVAVAFDV-- 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                TFR+++Y +YKA R + PE   PQ   ++   QA  IP    +GFEADD+I +  
Sbjct: 64  ---GRTFRDDLYAEYKAGRAETPEEFYPQFERIKQLVQALSIPIYTAEGFEADDVIGSLA 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS--------------PTTCLYDTVKEEKIDIEHVIKK 171
             A ++G    I++ D D +QLV+               +T LYD        +E V K+
Sbjct: 121 RQATEQGVDTIILTGDTDTLQLVNEHVRVALANPYGGKTSTTLYD--------VEQVRKR 172

Query: 172 W-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           + G+ P ++  L+ L GDS DNIPG+ GIG K A  LL+++G+L+ +L N       KR 
Sbjct: 173 YDGLEPAQLADLRGLKGDSSDNIPGVRGIGEKGAITLLKQFGSLDKLLDNIE--AAPKRY 230

Query: 231 ENIL-EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF---TKLIN 286
           +++L E A+ AR SR L  + TD P+ + L    L   +   +++ L+ LEF   + LI 
Sbjct: 231 QHLLREQADQARSSRHLATIVTDAPVQLDLAKCRLGVYDRAAVMALLQELEFGVSSNLIK 290

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           ++ +     AA +  +  D+ T                +++ + F++ S   + ++S  +
Sbjct: 291 KLPSV--VQAATVATLPADLPTAPQG------------SVQLALFANESASPTMVSSVTS 336

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
            Q                      + + + + + VQ+L      +F     ++ A  S  
Sbjct: 337 AQI---------------------VRDPQALAELVQRLRAAPGFAFDTECTSLQAVGSHL 375

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + IA++     +D  +          V    +  G+     ++++ L   F + +  K  
Sbjct: 376 VGIALAI--APNDAYY----------VPVGHEE-GEQLPLADVVAALGPLFADPNIPKFA 422

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKS 523
           HN K+D  VL   GI + G   D M+ + +L   +   D+A    K      T ++++  
Sbjct: 423 HNAKFDAEVLAGVGIQVAGLAFDTMIAAAMLGKRQGLKDLAFYELKLPEPPTTIEDLIGR 482

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQ 582
               I    +   Q   +A  ++   L L   LR +L  +  L  +Y R++ P+IDV++ 
Sbjct: 483 GSKQISFAAVPIEQAAPYAAADALHTLLLTETLRGQLTTDTALRDLYYRVELPLIDVLTD 542

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641
           ME+TGI +D + L+++    ++ +  L E IY  +G  FN++S +QL ++LF +L   P 
Sbjct: 543 MELTGILLDHEYLRELGKRFAQRIAELTEQIYAKAGGPFNINSGQQLNEVLFERLGINPR 602

Query: 642 G---AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
               +K K+G +  TA+ LE+++    PI  +IL +RQL+K+KSTY D+LP  +N RT R
Sbjct: 603 DYGLSKLKSGGYSITAEVLEELSQ-LYPIAADILAYRQLTKLKSTYIDALPQLVNPRTGR 661

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +HT Y+     TGRL+S  PNLQNIP++T+ G++IRRAF++ P  + ++ADYSQIELR+L
Sbjct: 662 IHTSYNQIGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAAPGHRFVAADYSQIELRVL 721

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AHI+    L   F+  LDIH   A+ +FGV  ++V    RR AKT+ F +IYGIS F LA
Sbjct: 722 AHISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVIYGISAFGLA 781

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L I R  A   I   F +FPGI  YI++T  F RQ+GYV+T+FGRR   +++ +   +
Sbjct: 782 QRLGIERDLARQLIDNLFEQFPGIRRYIDQTLAFGRQHGYVQTLFGRRRVMEDLRA-SGA 840

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAPIQG+AADI + AM+ VH++L +  L T++LLQ+HDEL+ E PEEE+ 
Sbjct: 841 RRAAAEREAINAPIQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAEAPEEEVP 900

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            A+ ++   M         L VPL VN++   NW+E
Sbjct: 901 AAAHLLREVMSNTY----QLVVPLGVNLETGPNWEE 932


>gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
 gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
          Length = 896

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 310/977 (31%), Positives = 522/977 (53%), Gaps = 94/977 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N LFL DG++ +YRA++A  +      G P NA+ G   ML + ++N   E   + FA  
Sbjct: 3   NRLFLFDGTAIVYRAYFAIDVSLTNSKGEPTNAVYGTARMLSRFIKNYIAEGDYALFA-- 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    T R++++  YKA R ++P+ L+ QL  +    + FGI    +   EADDIIAT 
Sbjct: 61  FDRKEATHRHDLFEGYKATRAEMPDALVAQLKYIPDLVEGFGIKFHSVATLEADDIIATA 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
                 +   + I+S DKD++QLV     +   V      E+ D   V +K+G+PPEK+ 
Sbjct: 121 VTKYRDKFDEIVIVSGDKDILQLVDEKVKVLRFVSGLTDLEEYDRRKVEEKFGLPPEKIY 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L +L GD+ DNIPG+PGIG KTA  LL+EYG+++ I  N  ++    R+          
Sbjct: 181 ELLSLCGDTSDNIPGVPGIGIKTALKLLKEYGSIDEIYKNIRKLSPGLRK---------- 230

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                         +L+   KALE +K + R+ T  D       
Sbjct: 231 ------------------------------KLMDGKKALEMSKKLVRLVTDAD------- 253

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              L I   E +   ++ E  R+  +K  +F+SL  +                 L  L  
Sbjct: 254 ---LHIELEELRYRGLDKEKLRELFLKL-EFASLLREFD---------------LTNLGS 294

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               ++ Y  + + +++ +  + L+     S  + T ++D   +K + I+++  D     
Sbjct: 295 DNNEDNGYRPVSSQQELDELFETLKGSDVISIDLETSSLDPHEAKIVGISVAIKDG---- 350

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E  +I ++ H S D        K++L  LK+  E+     +G N+K+D  +L ++G
Sbjct: 351 ----EGFYIPVN-HESSDWQADE---KQVLLRLKELLEDSGTKIVGQNLKFDYEILEKHG 402

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I  +    D M+ +Y+L+      ++  +A K+L Y   +  E++   +     +K+S  
Sbjct: 403 IEPVVPHFDTMIAAYLLNPDSRRFNLDDLALKFLGYRTTSFSELMNKNQLKDQFEKVSVE 462

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +  ++++E++++ L+L+ +L  KL    L +++ +++  +I V++++E+ G+ ++ + LK
Sbjct: 463 EAAKYSVEDADIALRLYRVLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLK 522

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S E  K L  + E +++L+GE FN +SP Q+  ILF KL      KTK G + T+A  
Sbjct: 523 NLSEEYEKRLGKIREELFELAGEPFNPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAV 582

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   ++PII+ +L++R+  K+KSTY D+LP  +N  T R+H  Y    T TGRL+S 
Sbjct: 583 LEEL-VNEHPIIQKLLDYRKYQKLKSTYLDTLPTLVNPVTGRIHASYHQTGTGTGRLSSS 641

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSL 775
            PN+QN+PIK + G++IR+  +   +  K+ISADYSQIELR+LAH ++   L   F+N  
Sbjct: 642 NPNMQNLPIKGEEGKEIRKCVVPQKSDWKIISADYSQIELRVLAHFSEDERLISAFKNGE 701

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H + A+ ++GV+++ V+P+MR+  K +NFSIIYGISP+ LA +L+I    A + I  Y
Sbjct: 702 DVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIYGISPYGLARRLKIKTHIAENMISNY 761

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F+ +PG+ ++I +  +  ++ GYV T+FGR+       +         ER AIN PIQG+
Sbjct: 762 FNAYPGVRKFINEVIHEAKEKGYVRTLFGRKREIPHFRTRNKMKIQEGERIAINTPIQGT 821

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI +HK +++  L    +LQ+HDELVFE P  E+     I+   M       
Sbjct: 822 AADIMKLAMIKIHKMVKEEGLEAFPILQVHDELVFEAPATEVDRVCDILTRGMSGV---- 877

Query: 956 INLRVPLKVNIKVSNNW 972
           + L+VPL+V++ V++ W
Sbjct: 878 VELKVPLEVDVAVNSYW 894


>gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
 gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I
 gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
          Length = 942

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 341/998 (34%), Positives = 531/998 (53%), Gaps = 98/998 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG +  YRAF+A      R   G P  A+ GF  +L   L   R +    + AV F
Sbjct: 6   LVLVDGHALAYRAFFALRESGLRSSRGEPTYAVFGFAQILLTALAEYRPD----YAAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++Y +YKA R + PE   PQ   ++   QA  IP    +G+EADD+I T  
Sbjct: 62  DV-GRTFRDDLYAEYKAGRAETPEEFYPQFERIKQLVQALNIPIYTAEGYEADDVIGTLA 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS--------------PTTCLYDTVKEEKIDIEHVIKK 171
             A + G    I++ D D++QLV+               +  LYD        +E V K+
Sbjct: 121 RQATERGVDTIILTGDSDVLQLVNDHVRVALANPYGGKTSVTLYD--------LEQVRKR 172

Query: 172 W-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKK 228
           + G+ P+++  L+ L GD+ DNIPG+ GIG K A  LL+++ +L+ +L  I+A+     K
Sbjct: 173 YDGLEPDQLADLRGLKGDTSDNIPGVRGIGEKGAIALLKQFRSLDALLEQIDAA----PK 228

Query: 229 RRENIL-EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF---TKL 284
           R + +L E AE AR SR+L  + TDVP+ + LE   +   +   +++  + LEF   + L
Sbjct: 229 RYQTLLREQAEAARFSRQLATIVTDVPVQLDLEAARIGVYDRSAVMALFQELEFGVSSNL 288

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           I ++            P V+   T          E+  D  +  +  ++   Q S    E
Sbjct: 289 IKKL------------PSVVQAPTL--------AELPAD--LPAAPLTTAPTQLSLFAGE 326

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
             P        Q  ++ P      T + +   +   V +L    + +F     ++    S
Sbjct: 327 SEPA-------QPTAEPP----PVTIVRDATALADLVSRLRNAPAFAFDTECTSLQPVAS 375

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
             + I+I+      DT       +I +  H S+          E+++ L  FF N    K
Sbjct: 376 DLVGISIAI---APDT-----VCYIPVG-HQSE----TQVPCGEVVTALAPFFANPQQPK 422

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEIL 521
             HN K+D  VL   GI + G   D M+ + +L   +   D+A    K      T ++++
Sbjct: 423 FAHNAKFDMEVLAGAGIKVSGLAFDTMIAAAMLGKRQGLKDLAFYELKLPEPPTTIEDLI 482

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVV 580
                 I   ++   Q   +A  ++   L+L   L+ +L  E  LH +Y R++ P+I+V+
Sbjct: 483 GRGNKQISFAEVPVEQAAPYAAADALYTLRLTERLQRQLEAEPALHDLYYRVELPLIEVL 542

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           + ME+TGI++DQ+ L+++    ++ +  L E IY  +G  FN++S +QL D+LF +L   
Sbjct: 543 TDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDVLFGRLGID 602

Query: 641 SGA----KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
             A    K K+G +  TA+ LE+++    PI  +IL +RQL+K+KSTY D+LP+ +N RT
Sbjct: 603 PRAHGLSKLKSGGYSITAEVLEELSQ-LYPIAADILTYRQLTKLKSTYIDALPDLVNPRT 661

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+HT Y+     TGRL+S  PNLQNIP++T+ G++IRRAF++ P  + ++ADYSQIELR
Sbjct: 662 GRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYSQIELR 721

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH++    L   F+  LDIH   A+ +FGV    V    RR AKT+ F +IYGIS F 
Sbjct: 722 VLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFG 781

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA +L I R  A   I   F +FPGI  YI++T  F RQ+GYV+T+FGRR   +++ +  
Sbjct: 782 LAQRLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLRA-S 840

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            + R   ER AINAPIQG+AAD+ + AM++VH++L +  L T++LLQ+HDEL+ E PE+E
Sbjct: 841 GARRAAAEREAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEAPEDE 900

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +  A++++   M        +L VPL VN++V  NW E
Sbjct: 901 VEPAARLLRDVMSSVYR---DLVVPLSVNLEVGPNWDE 935


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 331/980 (33%), Positives = 526/980 (53%), Gaps = 78/980 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L L+DGS+F++RA+++T   +  +D G P  A+ G  N +  L    RK   A   A 
Sbjct: 3   HQLILMDGSAFLFRAYFSTLAQNLTNDEGFPTGAMFGVVNAVKHL---QRKYPNAKIIA- 58

Query: 64  IFDYPAVTFRNEIYPDYKANR-PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           IFD      R++IYP YKA+R P   E+++   PL  +  +A G   + + G EADD+IA
Sbjct: 59  IFDAKGKNHRHDIYPKYKAHRKPADSELVMQIEPLYEI-IRAMGFHFLCVPGVEADDVIA 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  A++      I S DKDL QLVS      D ++    D + V++K G+ P++++  
Sbjct: 118 TLSRCADQNKIKTIIASGDKDLYQLVSDNISQLD-MRGNLYDHDGVVEKMGVRPDQIMDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            ALTGDS DNIPG+P +G KTA   LQ Y ++  +  N+++IK  K  E + +      +
Sbjct: 177 LALTGDSADNIPGVPSVGPKTAIKWLQAYNDVAGVKENSAQIK-GKVGEKLRDSFGLLDM 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVATTYDCDAANI 299
           S +LV L+ DV   +P    IL+D  G    +L+S  K   F+  + ++  T   +  N 
Sbjct: 236 SHQLVELKFDV--DLPCN--ILDDEPGQDNIKLVSLYKRYGFSMWLKQLGNTAGTNTDNN 291

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           EP   D+   +N+        DR+        SS  D+ +        Q L LE+     
Sbjct: 292 EPPETDLVKEKNR--------DREENC-----SSWFDEYT--------QNLVLEQ----- 325

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                           D +  V++L+   S  F + T ++D  ++  +      L  KD 
Sbjct: 326 ---------------TDFENLVERLKNSRSFVFDLETTSLDYMNAAIVGWVF--LVDKDS 368

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V   ++D       D         + L  LK   ++E   K+G N+KYD  VL  Y
Sbjct: 369 FYVPVGHDYLDAPKQLDFD---------DALLTLKPILQDESINKVGQNLKYDAHVLANY 419

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
            I + G  +D M+ SYVL+S  + H++  ++  +L++      ++    K  I  +++  
Sbjct: 420 QIDLNGISDDTMVKSYVLNSVATRHNMDDLSMHYLNHQTIHFSDVAGKGKKQITFNQVGL 479

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                +A E+  V  +L  +L   ++   KL+ +Y+ L+ P+I V+ +ME  G++ID  L
Sbjct: 480 EAAFPYACEDVIVTHELNKVLDEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGL 539

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L     ++ K +  ++   ++L+G+ FNL SPKQ+  ILF++      AK KT +   + 
Sbjct: 540 LNAQQLDVVKQMNEIQSQAFELAGDAFNLESPKQIQQILFSEEGLGLEAKKKTPKGAPST 599

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            + E +   D+P++  IL +R L+K+ STY ++LP  I+  T+R+HT Y  A T TGRL+
Sbjct: 600 NE-EALKLLDHPLVDLILSYRTLTKLNSTYLEALPKQIDLNTKRLHTSYHQAVTATGRLS 658

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPI+T+LG +IR AFI+     +I+ADYSQIELRI+AHI++   L + F N 
Sbjct: 659 SSNPNLQNIPIRTELGARIRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSLIEAFNND 718

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +D+H   A+ +F V IE+V+   RR+AK INF +IYG+S F LA Q+ + R+EA  YI  
Sbjct: 719 VDVHSATASMMFNVPIEEVNKDHRRNAKAINFGLIYGMSAFGLAKQINVSRTEAKQYIDA 778

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+  Y++  +   +  GYVETI GRR++  +IN+    ++    R AINAP+QG
Sbjct: 779 YFENYPGVLNYMDNIREAAKVQGYVETIMGRRLYLPQINAKNKMLQQHALRTAINAPMQG 838

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           S+ADI ++AM+ VH+ + D     KM++Q+HDELVFEV   +    +  I   M  A   
Sbjct: 839 SSADIIKKAMLDVHEWIGDGNDEIKMIMQVHDELVFEVNASKADEFANKIQELMANA--- 895

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L +PL V++ + ++WQ+
Sbjct: 896 -YQLDIPLVVDVGIGDSWQQ 914


>gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
 gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
          Length = 893

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 321/976 (32%), Positives = 520/976 (53%), Gaps = 111/976 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DGSS I+RAF+A P L+   DG+  N + GF  M ++ ++  + + I     V FD
Sbjct: 19  VMLIDGSSLIFRAFFALPNLTN-ADGVMTNGVYGFLTMYFRAVEEYKPDYIL----VAFD 73

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + DYKANR K P  L  Q  +++    +  +  ++I G+EADDI+ T++ 
Sbjct: 74  KKTKTFRHKEFEDYKANRDKAPNELNYQFGILKDILDSLNVKYLDIDGYEADDIVGTFST 133

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           IA++EG    II+ DKD  QLV+    ++ T K     E+I ++ +   +G+ P++++ +
Sbjct: 134 IAKEEGLETVIITGDKDYFQLVNDKVVVFLTRKGISQMEEITVKSIEDDYGLSPKQLIDV 193

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+ GIG KTA   +++YG++E +  N   IK KK +            
Sbjct: 194 KGLMGDKSDNIPGVDGIGEKTAIKFIKKYGSMEGLYENLDDIKGKKTK------------ 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                 E+    + I+FL     +K I  + T          PV
Sbjct: 242 ----------------------ENLENSKQIAFL-----SKKIGTIVTN--------APV 266

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            + I+               +  +K     SL ++ SK N  +     F+E+ +  S+  
Sbjct: 267 GMKIS---------------ELKVKEPDLDSLREKFSKYNFNK-----FMEKFEDTSEER 306

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   ++   +  D    +  +E  G   FK I +  +  HS    IAI           
Sbjct: 307 KDEIEFS--YSFSDDFSIIDDIEKDGVFYFKSIFEEDNYIHSNAYKIAI----------- 353

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                       TS   T      ++ +   KK+FE ++  K+  +IK D ++  + GI+
Sbjct: 354 -----------KTSSSKTYIYNPDEKFVEKFKKYFEADNIKKVSFDIKEDIVLFDKLGIN 402

Query: 483 MR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           +   ++D MLM Y++D  RSS+D+ + +Q +L Y     +++L   KS      +    +
Sbjct: 403 ISLPYDDTMLMHYLIDPSRSSYDLKTFSQAFLKYEVENEEDLLGKGKSKKSYKDLDSDNL 462

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            ++     N I     +L  KL    +  +Y+  +  +  V++ MEITG   D++ L+++
Sbjct: 463 GKYLASIVNAIEDSLDILTQKLEELSMYDLYKDCEIKLSKVLADMEITGFICDKNELEKI 522

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E+S  L  LE+ IY+L+G +FN++SPKQL  ILF  LK P   KTKTG + T AQ LE
Sbjct: 523 KDEVSLELGDLEKIIYELAGSEFNINSPKQLSKILFEDLKLPIIKKTKTG-YSTNAQVLE 581

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++    +PII+ I  +R++ K+KSTY +SL   I++   R+ + +    T TGRL+S EP
Sbjct: 582 KLR-KKHPIIEKIERYREMYKLKSTYLESLEECIDE-DGRIRSTFKQNVTATGRLSSTEP 639

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQN+PI+T+ G+KIR+AF +   K LI ADYSQIELR+LAH+A    + + F   +DIH
Sbjct: 640 NLQNLPIRTEEGRKIRKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFSKDIDIH 699

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F   I++V+   R  AK +NF IIYGIS + L+  L IPR  A +YI+ Y   
Sbjct: 700 TKTASEVFSTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRKRAKEYIENYLDT 759

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I +Y++      +++GYV TIF RR +  EINS   ++R+  ER A+N PIQG+AAD
Sbjct: 760 YPEIKKYMKDIVKKAKEDGYVNTIFNRRRYVPEINSKNFNVRSFGERVALNTPIQGTAAD 819

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI+ +++L+  K+  K++LQIHDE++ E  ++++  A +I+  SM+ A    ++L
Sbjct: 820 IIKFAMINSYQNLQKAKIDAKIVLQIHDEIIIEASKKDLEKAKEILKSSMQDA----VDL 875

Query: 959 RVPLKVNIKVSNNWQE 974
           +VPL V+I    +  E
Sbjct: 876 KVPLLVDIDSGESMYE 891


>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
 gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
 gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
          Length = 997

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 331/1038 (31%), Positives = 541/1038 (52%), Gaps = 107/1038 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           MQ++  L+L+D    IYR+++A    PL++    G  V+A+ GF   L  LL + R    
Sbjct: 1   MQEKKTLYLLDAYGLIYRSYHAFARAPLINDS--GANVSAVYGFFRSLHTLLCHYRPR-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +F  +FD    TFR+  YP YKA R K    L  Q+PL+     A GI  +   GFEA
Sbjct: 57  --YFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH---------V 168
           DD+IAT       E   V IIS+DKD++QLV       DTV+  ++DI+H         V
Sbjct: 115 DDLIATLAKRVAAEHCHVVIISSDKDVLQLVC------DTVQVLRLDIDHKWTCCDAAYV 168

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            ++W + P +++ L +L GDS DN+PG+ GIG KTAA LL  +G L+ I  +   +K+  
Sbjct: 169 QQRWTVMPTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEAL 228

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R + I+   + A  SR L+ LR DVP    LE    + C  P  ++    +   + ++ +
Sbjct: 229 RTK-IVCGKKDAFFSRSLIELRDDVPCVFSLE----DSCCIPLDVTSAARIFVREGLHAL 283

Query: 289 ATTY-------DCDAAN-----IEPVVLDINTTENKGIAIETEIDRDT-----TIKTSQF 331
           A  Y       D +A N      E  VL      N+    + E    T      +K+   
Sbjct: 284 AQQYRACVQEIDTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKSELK 343

Query: 332 SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391
           +S       I +    Q + L R         +   Y  + +  ++++ +      G  +
Sbjct: 344 TSAVSGAIPIENRDLRQDVMLAR---------SAGHYRGVTDPVELKRIIDCACANGVVA 394

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--SQDSTGKNT----- 444
           F   TD +    ++ +  +I     ++  +F V  I  D+S+HT  +Q +  ++T     
Sbjct: 395 FDCETDGLHPHDTRLVGFSICF---QEAEAFYVPLIVPDVSLHTESTQCTCARSTNVETE 451

Query: 445 ------------------LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                               + ++  L++ + +E    + HN K+D  V+HR G+    F
Sbjct: 452 KECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGV----F 507

Query: 487 E-------DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
           E       D M+ +++LD  R ++ +  +A  +    + T +E++   ++      +   
Sbjct: 508 EHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQT---FAHVPYE 564

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +A E++++  +L+  L+ +L    LL V+E ++ P++ ++++ME  GI + +D+++
Sbjct: 565 CAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQ 624

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q++   S  +   E +I+ L+G +FN+ SPKQL  +LF +L  P G K   G + T    
Sbjct: 625 QLTRSFSDLIQQYEHDIFSLAGHEFNIGSPKQLQTVLFQELHLPPGKKNTQG-YSTDHSV 683

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L+++    +PI + IL +R LSK++STY +SL   +  +T RVHT +    T TGRL+S 
Sbjct: 684 LKKLA-RKHPIAEKILLFRDLSKLRSTYTESLAK-LADQTGRVHTSFVQIGTATGRLSSR 741

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPIK+  G+KIR+AF +    +LISADY+QIEL +LAH+++   L   F   +D
Sbjct: 742 NPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHID 801

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH + AA IF V+I+ V P MRR AKTINF I+YG+S FRL+ +L+I + EA  +I RYF
Sbjct: 802 IHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYF 861

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +PG++ +  +     R+ GYV ++ GRR +   I+S  +  R   ER A+N  IQ SA
Sbjct: 862 ETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSA 921

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI++ ++     L  ++LLQ+HDEL+FE P  E     +I+   ME A    +
Sbjct: 922 ADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHA----V 977

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L +PL+++++  N+W +
Sbjct: 978 ELSIPLRIHVESGNSWGD 995


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 332/991 (33%), Positives = 538/991 (54%), Gaps = 102/991 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           +  +  L+++DG S IYR+F+   A P+  R   G  V+A+ GF + L KL+    +E+ 
Sbjct: 41  LSSQKKLYIIDGYSLIYRSFFGFFANPI--RDTQGNNVSAVYGFFSTLLKLI----RENN 94

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +  V  D    TFR+ +Y  YKANR   PE L  Q+PL++    A  +P I + GFEA
Sbjct: 95  PDYLVVALDSMGPTFRHTMYEPYKANRDAAPEELHTQVPLIQNILTALKVPTIAMPGFEA 154

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT-CLYDTVKEEK----IDIEHVIKKW 172
           DDIIAT +  A +      + + DKDL+QLV   T  L    K EK    +  + V +++
Sbjct: 155 DDIIATLSEEATRHQIDTIMFTGDKDLLQLVDEHTFALRPAKKNEKFYRLMGCKEVEEEY 214

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKR 229
           GI P ++V   +L GDS DN+PG+ GIG K AA LLQ++G+LE I  N   +    QKK 
Sbjct: 215 GIKPSQIVDYLSLLGDSSDNVPGVKGIGEKGAAKLLQQFGSLEGIYSNLKLVAPGLQKKL 274

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            E +    E A+LS++LV L+ D+                           FT       
Sbjct: 275 AEGV----ENAKLSKRLVELKRDL---------------------------FT------V 297

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
            T+D +    + +V D++   +  I +  EI   + IK      L   +S  +S   P K
Sbjct: 298 DTFDTE----QYLVSDVDY--DAAIPLFQEIGMRSIIK-----ELGRVSSGESSSPIPAK 346

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
           +  +   K + Y    ++ T +   K++  + Q ++  G  +F + T  +D   ++ I  
Sbjct: 347 VEAKSETKQAVY----EAVTDVTQIKNL--FEQAIKAGGVMAFDLETTGLDEMLAQVIGF 400

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           +    + K        + ++ L VH +++   +    +++ S L+++  +     +G NI
Sbjct: 401 SFCWEEGK--------SYYVPL-VHETKELVDR----EQVRSLLEEYLGSGRLSLVGQNI 447

Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525
           KYD  VL ++GI  +  + D M+ +++LDS  S  ++  +A+K+L Y      +I+   K
Sbjct: 448 KYDYKVLRQWGIMPKNIYFDTMVAAWLLDS-TSVFNMDYLAEKYLDYKTVHYTDIVPKDK 506

Query: 526 --SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
             S IP++     Q   +  E+++V  +L+ L    L    L  + + ++ P++ +++ M
Sbjct: 507 LLSDIPLE-----QAVFYGAEDADVTFRLYKLFSELLGARNLRSLLDEVEMPLLVIIANM 561

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E+ GI +++ L++ +SAE    + ++   I+ + G  FNL+SP+QL ++LF +   P+GA
Sbjct: 562 ELAGIYLERKLIEPLSAEFEGRIDAIRNQIFAICGHAFNLNSPQQLQEVLFVERNIPTGA 621

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT++G + T+   LE +   D P ++ IL++R L+K+K+TY D LP  IN++T R+H  +
Sbjct: 622 KTRSG-FSTSTDVLEPLR-DDYPEVELILQYRTLNKLKTTYIDKLPLQINEKTHRIHPSF 679

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           +   T TGRL+  +PNLQNIP++T+ G++IR AF+       +SADYSQIEL +LAH+A 
Sbjct: 680 AQTGTETGRLSCKDPNLQNIPVRTEEGRRIRSAFVPQAGHVFLSADYSQIELVVLAHMAD 739

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F   +D+H   A+ IF V +++V+P  RR AKTINF ++YG+    LA  L+I
Sbjct: 740 DPGLKGAFAAGIDVHSSTASLIFDVPLDQVTPVQRRIAKTINFGVMYGMGTHSLAMDLKI 799

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           P SEA  +I +YF R+  +  ++E TK   +Q G V T+ G      EINS  +  R   
Sbjct: 800 PHSEAKQFIDQYFERYSSVRSFVEATKTMSQQVGSVSTLLGHVRTITEINSRSAVERAKA 859

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N  IQGSAADI + AM+ V   L+  KL  ++LLQIHDEL+FEVPE EI     +
Sbjct: 860 ERIAVNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEVPEAEIEETKAV 919

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +  ++E A    + L VPL+ +I+V +NW +
Sbjct: 920 VKEALEHA----VKLSVPLRTSIEVGSNWGD 946


>gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
            Chicago]
          Length = 1015

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 331/1038 (31%), Positives = 541/1038 (52%), Gaps = 107/1038 (10%)

Query: 1    MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            MQ++  L+L+D    IYR+++A    PL++    G  V+A+ GF   L  LL + R    
Sbjct: 19   MQEKKTLYLLDAYGLIYRSYHAFARAPLINDS--GANVSAVYGFFRSLHTLLCHYRPR-- 74

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
              +F  +FD    TFR+  YP YKA R K    L  Q+PL+     A GI  +   GFEA
Sbjct: 75   --YFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEA 132

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH---------V 168
            DD+IAT       E   V IIS+DKD++QLV       DTV+  ++DI+H         V
Sbjct: 133  DDLIATLAKRVAAEHCHVVIISSDKDVLQLVC------DTVQVLRLDIDHKWTCCDAAYV 186

Query: 169  IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
             ++W + P +++ L +L GDS DN+PG+ GIG KTAA LL  +G L+ I  +   +K+  
Sbjct: 187  QQRWTVMPTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEAL 246

Query: 229  RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            R + I+   + A  SR L+ LR DVP    LE    + C  P  ++    +   + ++ +
Sbjct: 247  RTK-IVCGKKDAFFSRSLIELRDDVPCVFSLE----DSCCIPLDVTSAARIFVREGLHAL 301

Query: 289  ATTY-------DCDAAN-----IEPVVLDINTTENKGIAIETEIDRDT-----TIKTSQF 331
            A  Y       D +A N      E  VL      N+    + E    T      +K+   
Sbjct: 302  AQQYRACVQEIDTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKSELK 361

Query: 332  SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391
            +S       I +    Q + L R         +   Y  + +  ++++ +      G  +
Sbjct: 362  TSAVSGAIPIENRDLRQDVMLAR---------SAGHYRGVTDPVELKRIIDCACANGVVA 412

Query: 392  FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--SQDSTGKNT----- 444
            F   TD +    ++ +  +I     ++  +F V  I  D+S+HT  +Q +  ++T     
Sbjct: 413  FDCETDGLHPHDTRLVGFSICF---QEAEAFYVPLIVPDVSLHTESTQCTCARSTNVETE 469

Query: 445  ------------------LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                                + ++  L++ + +E    + HN K+D  V+HR G+    F
Sbjct: 470  KECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGV----F 525

Query: 487  E-------DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
            E       D M+ +++LD  R ++ +  +A  +    + T +E++   ++      +   
Sbjct: 526  EHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQT---FAHVPYE 582

Query: 537  QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
                +A E++++  +L+  L+ +L    LL V+E ++ P++ ++++ME  GI + +D+++
Sbjct: 583  CAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQ 642

Query: 597  QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            Q++   S  +   E +I+ L+G +FN+ SPKQL  +LF +L  P G K   G + T    
Sbjct: 643  QLTRSFSDLIQQYEHDIFSLAGHEFNIGSPKQLQTVLFQELHLPPGKKNTQG-YSTDHSV 701

Query: 657  LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            L+++    +PI + IL +R LSK++STY +SL   +  +T RVHT +    T TGRL+S 
Sbjct: 702  LKKLA-RKHPIAEKILLFRDLSKLRSTYTESLAK-LADQTGRVHTSFVQIGTATGRLSSR 759

Query: 717  EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
             PNLQNIPIK+  G+KIR+AF +    +LISADY+QIEL +LAH+++   L   F   +D
Sbjct: 760  NPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHID 819

Query: 777  IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            IH + AA IF V+I+ V P MRR AKTINF I+YG+S FRL+ +L+I + EA  +I RYF
Sbjct: 820  IHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYF 879

Query: 837  HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
              +PG++ +  +     R+ GYV ++ GRR +   I+S  +  R   ER A+N  IQ SA
Sbjct: 880  ETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSA 939

Query: 897  ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
            ADI + AMI++ ++     L  ++LLQ+HDEL+FE P  E     +I+   ME A    +
Sbjct: 940  ADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHA----V 995

Query: 957  NLRVPLKVNIKVSNNWQE 974
             L +PL+++++  N+W +
Sbjct: 996  ELSIPLRIHVESGNSWGD 1013


>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
 gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040]
          Length = 935

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/618 (41%), Positives = 384/618 (62%), Gaps = 23/618 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           YT + + + +QQW+  +   G  +    T  ++   +  + I++  +          +  
Sbjct: 328 YTTVRDAETLQQWIDLIREHGYVAVDTETTGLNEMIADLVGISLCVV--------PGQAC 379

Query: 428 FIDLSVHT--SQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           ++ L+  T  S D  G + L       K+ L  LK   E++  LKIG N+KYD  +  R 
Sbjct: 380 YVPLTHKTGNSDDLFGSDDLAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN 439

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           GI +   +D ML+SY L  G   H + ++++++L +     K +L S KS+I  D++S  
Sbjct: 440 GIDVTPIDDTMLLSYALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVSIE 499

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +A E++++ L+LW   +P+L  +++  VYE L++P++ V++QME  GI++D+D L 
Sbjct: 500 DATPYAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQHGIKVDRDTLS 559

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S   S+ + +LE  I++L+GE FN+ SPKQLG+ILF K+  P G K KTG + T A  
Sbjct: 560 RMSNAFSQKMAALEAEIHELAGETFNVGSPKQLGEILFDKMSLPGGKKGKTGAYATGADI 619

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   ++ +   +L+WRQLSK+KSTY D+L  HI+  T RVHT Y      TGRLAS 
Sbjct: 620 LEDLAT-EHTLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGANTGRLASS 678

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++++ G++IR AF++     L+S DYSQIELRILAH+A I  L Q F +  D
Sbjct: 679 DPNLQNIPVRSEEGRRIREAFVADEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHD 738

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH M A+E+F V +E+++P +RR AK INF +IYGIS F LA  LRIPR EA  +I RYF
Sbjct: 739 IHAMTASEVFDVPLEEMTPDIRRKAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDRYF 798

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFPGI +Y++ T NF +++GYV+T+FGR+IH  EI + K    +  +RAAINAPIQG+A
Sbjct: 799 ERFPGIRQYMDDTVNFAKEHGYVQTLFGRKIHTPEI-AAKGPRASFAKRAAINAPIQGTA 857

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ RRAM+ + +++    L  +MLLQ+HDEL+FEVPE+ +     +    ME A  P +
Sbjct: 858 ADVIRRAMVRMPEAIA--HLPARMLLQVHDELLFEVPEDHVEETISVAREIMEGAADPAV 915

Query: 957 NLRVPLKVNIKVSNNWQE 974
           ++ V L V+     NW E
Sbjct: 916 HMDVKLVVDAGRGQNWAE 933



 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/297 (48%), Positives = 204/297 (68%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML+K +++++     +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLFKQVEDNKGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+   +FRN++Y  YKANRP  PE L+PQ PL R AT+AF I   EI+GFEADDIIA
Sbjct: 68  VIFDHSGKSFRNDMYDQYKANRPPAPEDLVPQFPLTREATRAFNIACKEIEGFEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +
Sbjct: 128 TLACQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVREKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE++L  A  IKQ KRR+ ++E  +   +
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEDLLDRAEEIKQPKRRQTLIEKRDQIEM 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           S++LV L  D+ +   L+ L + D +   L+ FL  +EF  L  R+A     +A  I
Sbjct: 248 SKRLVQLDCDMELDFTLDDLEVRDPDADTLLGFLAEMEFRTLSKRMADQLGREAPTI 304


>gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
 gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
          Length = 1040

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 337/1060 (31%), Positives = 539/1060 (50%), Gaps = 121/1060 (11%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K   L+L+D  + IY+ F+A PL++    G P NA+ G      + L N R++      A
Sbjct: 4    KRPTLYLLDSFALIYQVFHAIPLMTGPV-GQPTNAVFGIL----RDLLNLRRQRKPDLMA 58

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              +D P   FR+EI P YKA R   PE L PQL ++  A + F +P + + GFEADD++A
Sbjct: 59   AAWDAPGPVFRSEIDPSYKATRKDQPEDLTPQLDVIARALEGFRVPVVAVPGFEADDVLA 118

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T        G+ V + ++DKD  QL++ P   L +  K + ID      +WGI PE++V 
Sbjct: 119  TLARRGAAAGYDVILCTSDKDARQLLTDPAIRLLNLRKGQIIDAAAHRAEWGIGPERVVD 178

Query: 182  LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAET 239
              ALTGD++DN+PG+PGIG KTA  LL E+G L+ +L    A R+  KK  + ++E+AE 
Sbjct: 179  ALALTGDAVDNVPGVPGIGLKTAVKLLNEFGTLDQLLEAARAGRVPGKK-GQALVEHAEA 237

Query: 240  ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA-- 297
               +R+L+ LR D+P+      L+    +   L +  +   F K +  +    + DAA  
Sbjct: 238  LDRARRLIQLRDDLPLKFDPHALVTRPPDVEALQTLCRQCGFHKFLPEI----EADAARW 293

Query: 298  NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL--SDQTSKINSEQT-PQKLFLER 354
             I P          +  A     +  ++I       L  +D    I+S    PQ+ F+  
Sbjct: 294  GILPASSVAGPGPGQIPAPVPVPEPVSSIAPMPAPPLQANDPLRSIDSHHNQPQQSFIPN 353

Query: 355  LQKL----------------SQYPINNDSYTKIVN-TKDIQQWVQKLETIGSASFKIITD 397
             +                  ++ PI + +  ++VN  +++ +   +L          +  
Sbjct: 354  TETTEIRPVWSATSAPSSVGNERPIWSTAEYRLVNHPEELAKVAAELAGASQLGLWTVPG 413

Query: 398  TMDAFHSKPIAIAISTLDQKD-DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
            + D   +  + +A+S+   +     F        +   T++D              L   
Sbjct: 414  SPDLHRAAWVGLALSSEPGRGWYFPFMGPPGATVIPAQTARD-------------LLTPL 460

Query: 457  FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515
             EN       H++K    VL R+G ++ G   D M++SY+L+SG  +H    +A+++L++
Sbjct: 461  LENPRIAWHAHDLKAHLRVLKRHGWTLAGKGVDPMVLSYLLESGERNHTAPELAKRFLNH 520

Query: 516  T---------RKEILKSRKSSIPIDKISDSQVQEHAIENSN-------VI---------- 549
            T              +S+  + P  K   S+ Q  A E +N       V+          
Sbjct: 521  TLSRPPEPNASATTTRSKPKANP--KRGRSRSQADASEETNPDDETPDVVGLPQTTGTPP 578

Query: 550  -----------------------LQLWL------------LLRPKLIVEKLLHVYERLDK 574
                                   L LW             +L  ++  E L  +Y+ L++
Sbjct: 579  RDGFLVFADDPHQDGPAAVPPERLALWAVEWADASARLGQVLAQRVAAEGLERLYDTLER 638

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P+I++++ ME  G+ +D+  L+Q+S + S  L  LE   + L+GE FNLSSP QL  ILF
Sbjct: 639  PLIEILADMEEAGVALDRARLRQLSRDFSARLTDLERQAHQLAGEPFNLSSPPQLRVILF 698

Query: 635  TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
             +L  P   KT  G+  T  + LE++    + + K +LE R++ K+K+TY D+LPN +  
Sbjct: 699  ERLGLPPRGKTPKGEASTAQEVLEEL-AALHQLPKVLLEHRRIEKLKNTYLDALPN-LTH 756

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISADYSQ 752
               R+   ++   T TGRL+S EPNLQNIP++T+ G+++R+AF++  P  + L++ADYSQ
Sbjct: 757  PDGRIRATFNQGVTATGRLSSSEPNLQNIPVRTEEGRQVRQAFVAGDPARQVLLTADYSQ 816

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+LAH ++   L + FE   DIH  VAA+IFGV ++ V+   RR AKT+NF +IYG+
Sbjct: 817  IELRVLAHFSRDPALLRAFEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNFGVIYGL 876

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S   LA++L I +SEAA +I  YF ++P +  ++ +     R  G VET+ GRR   + I
Sbjct: 877  SAHGLASRLGISQSEAAAFINAYFDQYPHVEAFMTRVLTQARDTGRVETLEGRRRAINGI 936

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
               +   RN+ ER AIN  IQGSAAD+ +RAMI+V + L++ KL  +M+LQIHDEL+FEV
Sbjct: 937  KHVEGRHRNLAERTAINTVIQGSAADLIKRAMIAVDQRLKETKLPARMILQIHDELLFEV 996

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              + +T  ++++  +M  A      L  PLKV++    NW
Sbjct: 997  ERDALTETARLVQEAMIHAA----TLETPLKVDLAAGPNW 1032


>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema
           pallidum]
          Length = 997

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 331/1038 (31%), Positives = 540/1038 (52%), Gaps = 107/1038 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           MQ++  L+L+D    IYR+++A    PL++    G  V+A+ GF   L  LL + R    
Sbjct: 1   MQEKKTLYLLDAYGLIYRSYHAFARAPLINDS--GANVSAVYGFFRSLHTLLCHYRPR-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +F  +FD    TFR+  YP YKA R K    L  Q+PL+     A GI  +   GFEA
Sbjct: 57  --YFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH---------V 168
           DD+IAT       E   V IIS+DKD++QLV       DTV+  ++DI+H         V
Sbjct: 115 DDLIATLAKRVAAEHCHVVIISSDKDVLQLVC------DTVQVLRLDIDHKWTCCDAAYV 168

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            ++W + P +++ L +L GDS DN+PG+ GIG KTAA LL  +G L+ I  +   +K+  
Sbjct: 169 QQRWTVMPTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEAL 228

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R + I+   + A  SR L+ LR DVP    LE    + C  P  ++    +   + ++ +
Sbjct: 229 RTK-IVCGKKDAFFSRSLIELRDDVPCVFSLE----DSCCIPLDVTSAARIFVREGLHAL 283

Query: 289 ATTY-------DCDAAN-----IEPVVLDINTTENKGIAIETEIDRDT-----TIKTSQF 331
           A  Y       D +A N      E  VL      N+    + E    T      +K+   
Sbjct: 284 AQQYRACVQEIDTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKSELK 343

Query: 332 SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391
           +S       I +    Q + L R         +   Y  + +  ++++ +      G  +
Sbjct: 344 TSAVSGAIPIENRDLRQDVMLAR---------SAGHYRGVTDPVELKRIIDCACANGVVA 394

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--SQDSTGKNT----- 444
           F   TD +    ++ +  +I     ++  +F V  I  D+S+HT  +Q +  ++T     
Sbjct: 395 FDCETDGLHPHDTRLVGFSICF---QEAEAFYVPLIVPDVSLHTESTQCTCARSTNVETE 451

Query: 445 ------------------LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                               + ++  L++ + +E    + HN K+D  V+HR G+    F
Sbjct: 452 KECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGV----F 507

Query: 487 E-------DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
           E       D M+ +++LD  R ++ +  +A  +    + T +E++   ++      +   
Sbjct: 508 EHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQT---FAHVPYE 564

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +A E++++  +L+  L+ +L    LL V+E ++ P++ ++++ME  GI + +D+++
Sbjct: 565 CAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQ 624

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q++   S  +   E +I+ L+G +FN+ SPKQL  +LF +L  P G K   G + T    
Sbjct: 625 QLTRSFSDLIQQYEHDIFSLAGHEFNIGSPKQLQTVLFQELHLPPGKKNTQG-YSTDHSV 683

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L+++    +PI + IL +R LSK++STY +SL   +  +T RVHT +    T TGRL+S 
Sbjct: 684 LKKLA-RKHPIAEKILLFRDLSKLRSTYTESLAK-LADQTGRVHTSFVQIGTATGRLSSR 741

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPIK+  G+KIR+AF +    +LISADY+QIEL  LAH+++   L   F   +D
Sbjct: 742 NPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIELVALAHLSQDRNLLNAFRQHID 801

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH + AA IF V+I+ V P MRR AKTINF I+YG+S FRL+ +L+I + EA  +I RYF
Sbjct: 802 IHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYF 861

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +PG++ +  +     R+ GYV ++ GRR +   I+S  +  R   ER A+N  IQ SA
Sbjct: 862 ETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSA 921

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI++ ++     L  ++LLQ+HDEL+FE P  E     +I+   ME A    +
Sbjct: 922 ADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHA----V 977

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L +PL+++++  N+W +
Sbjct: 978 ELSIPLRIHVESGNSWGD 995


>gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
 gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
          Length = 905

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 322/975 (33%), Positives = 515/975 (52%), Gaps = 88/975 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA P L+   +GLP NA+ GF  ML ++    +KE     + V F
Sbjct: 3   RLVIMDGNSLLNRAFYALPPLT-SAEGLPTNAVHGFLAMLLRI----QKEKKPDCWVVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T R E+Y  YKA R + PE L PQ   ++    A  +P +E +G+EADD+IAT T
Sbjct: 58  DKTKATKRIEMYDQYKAQRKETPETLKPQFAYLKEILGAMSVPVLESEGYEADDLIATVT 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE EG  + +I+ DKD  QLVS  T +  T+K     E  + + + +K+ + PE+++ 
Sbjct: 118 RRAEAEGMEIIVITGDKDAFQLVSDQTTVEMTIKGISTVECYNKDKLFEKYQLKPEQIID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPGIPGIG KTA  LL  +G+LE +L N   +   K +  + EY E A 
Sbjct: 178 LKGLMGDPSDNIPGIPGIGEKTALKLLWSFGSLEQVLENVDAVPGNKLKALLKEYPEQAL 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+KL  +   VPI   +   +    +  + +  L     + +      T D D      
Sbjct: 238 LSKKLATMIDQVPIDFQIGDFVRTKPDSEKTLGLLHQYSLSMICRLFEQTLDQDQE---- 293

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                    ++G A +++  RD     +  ++ ++Q S+ N E            + SQ 
Sbjct: 294 -----GPARSRGPA-KSQDRRDNENGKNNRNNKNNQDSQDNQEDN----------RDSQ- 336

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI--AISTLDQKDD 419
                SY + +   D   W++++ +  +   +++        +  +++   +   DQ++ 
Sbjct: 337 --AGPSYEERI--LDPGGWLEQISSWMTEKTELVISYRLEGEAAHLSVWNEMGICDQRN- 391

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            ++ ++   ID                K +L+   +   +    KI  + K     L   
Sbjct: 392 -TYSLDRTQID----------------KNVLAKWHELLGSPRVFKIMADHKTLYSALANE 434

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G+ + G + D+ L +Y+++  RSS+  A            E+L  +   +      ++ +
Sbjct: 435 GVRLDGLKYDLSLAAYLMNPTRSSYQAA------------ELLSGQADELFFSAAREAGL 482

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             H  ENS          R KL    L  +   L++P+  V+++ME  GI +D+++L+Q+
Sbjct: 483 LAHEFENS----------RKKLEELGLSSLLHELEEPLSIVLAEMERQGISVDREMLEQI 532

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E+ K +  +EE+IY ++G  FN++SP+QLG +LF +L+ P   K KTG + T A+ LE
Sbjct: 533 GFELEKKIAVIEEDIYQIAGVSFNINSPQQLGKVLFEQLELPPLKKIKTG-YSTDAETLE 591

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++  G + I++ ILE+R L K+ STY   L   +  R  +VHT +    T TGRL+S EP
Sbjct: 592 EL-AGQHCIVEKILEFRHLVKLNSTYVKGLLGQL--RDGKVHTTFQQMVTATGRLSSTEP 648

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+ + G+K+R+ F+ S    +L SADYSQIELR+LAH ++   L Q F+   D+
Sbjct: 649 NLQNIPIRMEEGRKLRKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTGEDV 708

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+E+FGV +E+V+P MRR AK +NF ++YG++ F LA  +RIPR EA  YI+RYF 
Sbjct: 709 HARTASEVFGVPLEQVTPDMRRKAKAVNFGLMYGLTDFGLARDIRIPRKEAKFYIERYFQ 768

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+ G+ +Y+  +     + G   T+  R     E+N    ++R   +R A+N+PIQG+AA
Sbjct: 769 RYSGVKKYLNDSVVNAMETGETRTLLNRLRQTPELNHQNRTVRQFGQRIAMNSPIQGTAA 828

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V ++++   L   +LLQ+HDEL+ EV    +   +QI+   ME A L    
Sbjct: 829 DIMKLAMIRVDEAMKG--LEANLLLQVHDELLLEVSARALPEVAQIVKTEMESALL---- 882

Query: 958 LRVPLKVNIKVSNNW 972
           L VPL+V+ K   NW
Sbjct: 883 LTVPLQVDCKTGVNW 897


>gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 750

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 305/804 (37%), Positives = 464/804 (57%), Gaps = 73/804 (9%)

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETA 240
           GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  + A
Sbjct: 2   GDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNKDVA 61

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS KL  ++TDV + +  + L +   +  +L       EF + +           A++E
Sbjct: 62  YLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------ADVE 110

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                       G  ++++ DR T   +SQ        S + ++  P     E    LSQ
Sbjct: 111 -----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAVLSQ 148

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                ++Y  I++ K +  W+++L+     +F   TD +D      I +           
Sbjct: 149 -----ENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGM----------- 192

Query: 421 SFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           SF V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+DK +L
Sbjct: 193 SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDKSML 249

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            RYGI ++G   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ +  ++
Sbjct: 250 ARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQ 309

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I+  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ ID
Sbjct: 310 IALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLID 369

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           Q++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   
Sbjct: 370 QNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAS 429

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TG
Sbjct: 430 TNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 488

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L   F
Sbjct: 489 RLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAF 548

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y
Sbjct: 549 AAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRY 608

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP
Sbjct: 609 MDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAP 668

Query: 892 IQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+
Sbjct: 669 MQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELMEQ 728

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           +    + L VPLKV++ V  NW +
Sbjct: 729 S----MQLAVPLKVDVGVGANWDQ 748


>gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1]
 gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1]
          Length = 965

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 340/996 (34%), Positives = 518/996 (52%), Gaps = 71/996 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG +  YRAF+A      R   G P  A+ GF + +     N+ +E    + AV F
Sbjct: 8   LLLIDGHALAYRAFHALAEAGLRSSTGEPTYAVFGFTSAML----NAIEEYHPDYAAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++Y +YKANR + P     QL  ++    AF IP     G+EADD+I T  
Sbjct: 64  DV-GKTFRDDLYAEYKANRAETPAEFEQQLERIKQVLAAFDIPIYTADGYEADDVIGTLA 122

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKEEK----IDIEHVIKKW-GIPPE 177
             A + G  V I++ D D +QLV    T L +   V+  K      +  V  ++ G+ P+
Sbjct: 123 RQATERGVDVLILTGDTDTLQLVDEHVTVLLNNPYVRGSKNTTRYGVADVCARYKGLRPD 182

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++  L+ L GD  DNIPG+ GIG   A  LL ++G++EN+  +    +  KR +  LE  
Sbjct: 183 QLADLRGLKGDPSDNIPGVKGIGEAGAIALLNQFGSIENLYDHLD--EAPKRYQKHLEGQ 240

Query: 238 ETARL-SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCD 295
             A L S+KL  +  D P+T+ L    L D +  R+I+  + LEF   L+ R+  +    
Sbjct: 241 RDAALFSKKLATIVRDAPVTLDLPAATLADYDRSRVIAVFQELEFGASLVRRLPPSQTIA 300

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P V      +    A  T    D   + + F          N   TP    +E  
Sbjct: 301 APQALPPVEPPAPLQVDMFAPATPGPDDGPQQLTLF----------NDMPTPVAPVVE-- 348

Query: 356 QKLSQYPINNDS---YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                 P  +D+   Y    N  D++  V +L+     +F   T   +      + IA++
Sbjct: 349 ------PPAHDAPGEYRAACNDADLEAIVTELKHASLFAFDTETRGTNPLRDDLVGIALA 402

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKY 471
           T+             ++ L  HT    TG+  L +E +++ L+ FF +    +I HN K+
Sbjct: 403 TIPGSG--------WYVPLG-HT----TGEAQLPRERVIAALRPFFADPARSRIAHNAKF 449

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA----SIAQKWLSYTRKEILKSRKS 526
           D  VL R GI + G   D ML + +LD  R+  D+A    ++A    S   + ++   K+
Sbjct: 450 DIEVLERAGIPVAGVAFDTMLAAALLDKRRNLKDLAFYELNLAAPLESI--EALIGKGKN 507

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585
            +    +  ++   +A  ++++ L+L   L  KL     +  V+ RL+ P++ V+ +ME 
Sbjct: 508 QVTFADVPIARATPYAAADADMTLRLKPALEAKLRAAGSVADVFYRLEMPLVPVLVRMEQ 567

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGA- 643
            GI +D   ++ +   + + L  +E+ IY ++G+ FN++S  QL ++LF  K+  P+   
Sbjct: 568 AGILLDVPYMRALGERMGRELEQIEQQIYAIAGQTFNINSGDQLSEVLFGPKINLPTTGL 627

Query: 644 -KTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +T+TG++  TAQ LE++   D   II+ IL  R+LSK+KSTY D LP  +N  T RVHT
Sbjct: 628 DRTRTGRYSLTAQALEELQASDTTGIIELILRHRRLSKLKSTYVDELPALVNPETGRVHT 687

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            Y+     TGRL+S  PNLQNIP +T+ G+++RR FI+ P   LI+ADYSQIELR+LAH+
Sbjct: 688 DYNQLGAATGRLSSNSPNLQNIPTRTEEGREVRRGFIAAPGHLLIAADYSQIELRVLAHM 747

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
                L Q F    DIH   AA +FGV    V    RR AKT+ F +IYGISPF LA +L
Sbjct: 748 TGDPNLIQTFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIYGISPFGLAQRL 807

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG-RRIHYD-EINSPKSSI 879
            I R +A   I   F +FP I +YI++T +  R  GYV+++FG RR  +D  ++ P+   
Sbjct: 808 GISREQARGLIDSLFDQFPRIRDYIDRTLDIGRSEGYVQSLFGRRRPMFDLRVSGPR--- 864

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN PIQ +AADI + AMI+V   L+  ++ T+MLLQ+HDEL+FE PE E+  
Sbjct: 865 RQAAEREAINHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIFEAPEAEVDD 924

Query: 940 ASQIIVHSMEKACLP-KINLRVPLKVNIKVSNNWQE 974
              ++   ME      +    VPL+V I+   NW+E
Sbjct: 925 VVALVRERMEGVLHGMEPPFAVPLRVEIETGPNWEE 960


>gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 871

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 318/982 (32%), Positives = 504/982 (51%), Gaps = 131/982 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L   + E    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGVPDLTTP-EGLHTNAVYGFLNIMFKILDEEKPE----YLTVTFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E++ +YK  R  + E L  Q+P+++   +A  I  IE  G EADD++ T + 
Sbjct: 60  VHAPTFRHEMFSEYKGTRKPMAEELRQQVPVIKEVLEAMNISTIEKAGLEADDLLGTLSR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180
           + E+ G  V+IIS D+D +QL +    +     K+ K +IE+     V++++ + P + +
Sbjct: 120 MCEESGMDVSIISGDRDTLQLATEHVKIRIPKTKQGKTEIENYYAADVVERYKVTPREFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GDS DNIPG+PGIG KTA  ++ EY  +EN   +AS +K  +  +NI E+ E A
Sbjct: 180 DVKALMGDSADNIPGVPGIGEKTATKIIMEYQTIENAYAHASELKPPRASKNIQEFWEQA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S+ L  + T       +E    E+          + L F  ++ R             
Sbjct: 240 KMSKVLATIETHADFEFDIEKAHYENPYTEEAYKIFERLRFKNMLGR------------- 286

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                I T ENK   IE +I R+ T K                        +ER+  +++
Sbjct: 287 ---FSIETKENK---IE-KIFREVTEKEE----------------------IERIFAMAE 317

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP-----IAIAISTLD 415
                                 K + +G A  K   + +  F + P     IAIA S  D
Sbjct: 318 ----------------------KAQCVGVALSKDEGNVLPLF-AHPSGFGRIAIAWSEKD 354

Query: 416 QKD---DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                 D S  +E +F  LS    + S       KEIL Y+K   ++  F          
Sbjct: 355 VVTIPCDLSTDMEFLFAKLSHVAEKVSCFSVCGLKEILPYIKNVKQSSAF---------- 404

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
                          D+++ +Y+L+  +S +    +A+++L                I  
Sbjct: 405 ---------------DVIVAAYLLNPLKSDYTYEDVAEQYLG---------------IAG 434

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +++       +        +L  KL   ++  ++  ++ P++  + +ME  G++++ 
Sbjct: 435 GIQAELNVKCCYEAYTAFAAASVLDNKLKEAEMDRLFYEIEMPLVFTLYEMESAGVKVEA 494

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + LK    ++ + ++ LE  IY+++GE+FN++SPKQLG ILF KL  P   KTKTG + T
Sbjct: 495 EALKLYGDQLGEQIIQLEHQIYEMAGEEFNINSPKQLGVILFEKLNMPHAKKTKTG-YST 553

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  LE++   + PI+  ILE+RQL+K+KSTYAD L   I     R+H  ++   T TGR
Sbjct: 554 AADVLEKL-AEEYPIVSKILEYRQLAKLKSTYADGLAVFIGD-DGRIHGKFNQTVTATGR 611

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIP++ +LG+ IR+ F+       + ADYSQIELR+LAH +    L + + 
Sbjct: 612 LSSTEPNLQNIPVRMELGRMIRKVFVPKEDCVFVDADYSQIELRVLAHCSGDEQLIKAYR 671

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
            + DIHRM A+++F    ++V+   RR+AK +NF I+YGIS F L+  L I R EAA+YI
Sbjct: 672 EATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGIVYGISSFGLSMDLSITRKEAAEYI 731

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF  +PG+ ++++ +    ++ GY  T+FGRR    E+ S     RN  ER A+NAPI
Sbjct: 732 EHYFETYPGVKKFLDDSVENAKEKGYAVTLFGRRRPVPELKSSNFMQRNFGERVAMNAPI 791

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI VHK L+   + ++M+LQ+HDEL+ E    E+    +I+   ME A 
Sbjct: 792 QGTAADIMKIAMIDVHKELKKRNMKSRMILQVHDELLIEAECSEVDEVKEILRDKMENA- 850

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L VPL V++    NW E
Sbjct: 851 ---VKLSVPLIVDMHTGKNWYE 869


>gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 878

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 314/976 (32%), Positives = 510/976 (52%), Gaps = 112/976 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DGSS I+RAF+A P L+  +DG+  N + GF  M      N+       +  V FD
Sbjct: 5   VMLIDGSSLIFRAFFALPKLTN-NDGVMTNGVYGFLTMY----NNAVDRYKPDYILVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR++ + DYKA R K+P  L  Q  +++    + G+   ++ GFEADDI+ TY  
Sbjct: 60  RASKTFRHKEFKDYKATRDKMPSELSYQFGILKDILDSMGVKYTDLDGFEADDIVGTYAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182
           +A+++G+   +I+ D+D +QLV     +  T K     ++  +E + +++G+ P++++ +
Sbjct: 120 MAKEKGYNSVLITGDRDYLQLVDENIVVNLTKKGVSETKEYTVETIKEEFGLTPKQLIDV 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+ GIG K A   +Q+YG++E +  N   +  KK +EN++     A +
Sbjct: 180 KGLEGDKSDNIPGVDGIGPKKAIGFIQKYGSIEGLYENIDEVSGKKTKENLINSEAIAYM 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+K+  + T  P+   LE + L + +   L        F K +       D D  N    
Sbjct: 240 SKKIGTIVTSAPVEYDLEEIKLGEVDEKSLREKFSKYNFNKFLE------DMDGGN---- 289

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                  I+  +F+                       +KL +YP
Sbjct: 290 ----------------------PIEAKEFT----------------------YEKLEEYP 305

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                           + V++++     +FK+I D     HS    IAI T   K   ++
Sbjct: 306 ----------------KLVEEIKKEKEFTFKVIYDGDRYIHSNAYKIAIKT---KKSPTY 346

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI- 481
             E                     ++ ++ +K+ FE+E  LK   +IK D ++L + GI 
Sbjct: 347 IAEP-------------------DEDFVTNMKEIFEDEKILKNSFDIKEDLVLLAKLGID 387

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
               ++DIMLM Y++D  RSS+D+ +++Q +L Y     +++L   K ++  + +   ++
Sbjct: 388 GALPYDDIMLMHYLIDPSRSSYDMKTLSQSYLDYEVNNPEDLLGKGKKALKYEDLDFDKL 447

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                   N I      L  KL    +  +Y+ ++  +  V++ MEI G   D+ +L+++
Sbjct: 448 GNFMASEINAIYDAKDKLVDKLNEYHMYDLYKEIEIELSKVLADMEIVGFVTDRKVLEEL 507

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
              I  ++  L + IY+LSG +FN++S KQLG++LF  L+ P   KTKTG + T A  LE
Sbjct: 508 KEGIDADIDELTQEIYELSGSEFNINSTKQLGEVLFKDLELPVIKKTKTG-FSTDASVLE 566

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++    + II  I  +R+L K++STY + L   I+    R+ + +      TGRL+S +P
Sbjct: 567 KLR-DKHQIIPKIERYRELFKLRSTYIEGLEKAID-YDGRIRSTFRQNIAATGRLSSQDP 624

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQN+PIKTD G+ IR+AF +   K LI ADYSQIELRILA ++    +   F N  DIH
Sbjct: 625 NLQNLPIKTDEGRLIRKAFKAEEGKILIDADYSQIELRILASLSGDEHMIDAFINVDDIH 684

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  A+++F   +E+V+ + R  AK +NF IIYGIS + L+  L I R EA +YI  Y   
Sbjct: 685 RKTASKVFHTPLEEVTKRQRSEAKAVNFGIIYGISDYGLSQNLNISRKEAKEYIDNYMAS 744

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EY++      +++GYVET+F RR +  EINS   ++R+  +R A+N PIQG+AAD
Sbjct: 745 YPSIKEYMDSIVEKAKEDGYVETLFKRRRYVPEINSRNFNVRSFGQRVALNTPIQGTAAD 804

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI  +K+L+  K+  K++LQIHDE++ E  +E+   A +I+  SME A     NL
Sbjct: 805 IIKIAMIETYKNLKKEKIDAKIILQIHDEIILEASKEDEDRAIEILRESMESAA----NL 860

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V+I   ++  E
Sbjct: 861 EVPLIVDIDTGDSMYE 876


>gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
 gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
          Length = 924

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 328/976 (33%), Positives = 509/976 (52%), Gaps = 70/976 (7%)

Query: 14  SFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA 69
           + +YRAF+A   L R       GLP  A+ GF   L K+ +N        +    FD   
Sbjct: 2   AMLYRAFFA---LQRTGMSSPSGLPTGALYGFTTALLKIFENYHPH----YLVAAFDSRE 54

Query: 70  VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII-ATYTYIA 128
            TFR+ +   YKANR   PE LL QL  +    +AFG+P I+  G+EADD+I A  T  A
Sbjct: 55  KTFRHHLLESYKANRAAPPEELLQQLEKLFELLKAFGVPVIKQAGYEADDLIGAMVTQFA 114

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184
           +     + I++ DKDL QLV     +    K     E +    V   +G+PP++      
Sbjct: 115 DV--CRIGIVTPDKDLAQLVREGVQILKPGKNQHELEPLGCNEVKAHFGVPPKQFTNFLT 172

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           LTGD+ DNI G  GIG KTAA LL++Y  L+ +  +   +  K R+ ++ ++A    L  
Sbjct: 173 LTGDTSDNIVGAKGIGPKTAATLLEKYQTLDKLYQHLDELTPKVRK-SLEDFAPNRELVL 231

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV +  D P+ + LE L  ++     ++  L+ L F  +           AA ++   +
Sbjct: 232 QLVTICCDAPLHVTLEELACKNPARDVVLPLLQELGFRTI-----------AARLQAASV 280

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            +    N G      +  D    +S   + SD  +       P             +P  
Sbjct: 281 ALTCACNDGGESAPPMQSDP--NSSNLLNGSDGNTSATDTAPP-----------PSFPDV 327

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              YT +   + +Q  +++L+ +   +    T ++D F ++   I++     K       
Sbjct: 328 PRHYTLVETREQLQALLEELQQVTHIAVDTETTSLDVFEAELAGISLCAEAGK------- 380

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              FI     T+ D+  +    KE++  LK   EN    K G N+KYD LVL +YGI + 
Sbjct: 381 -AFFI----ATTPDALER----KEVVKQLKPLLENPAITKSGQNLKYDMLVLKKYGIELA 431

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQE 540
               D ML SYVL+     H++  +A ++L  T     E+  + K    I ++    +  
Sbjct: 432 PISFDTMLASYVLNPDEH-HNLDDMALRYLGRTTTKYDELTGTGKQRRHIFEVEKEALTN 490

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A ++++V  QL  +L+ +L  E +LL +   ++ P++ V++ ME  GI ID + L +V+
Sbjct: 491 YACQDADVAFQLEEVLQAQLQAEPQLLALCTTMEFPLVRVLATMEYAGIAIDTEHLARVA 550

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
                 L SL +NIY  +G  FN+ SPKQL  +LFT L  P+G  TKTG + T    LE+
Sbjct: 551 ETTELELQSLTDNIYAAAGSSFNIDSPKQLSHVLFTDLSLPTGKSTKTG-FSTDVGVLEE 609

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +     PI  ++L +R L K+K TY ++LP  IN RT R+HT ++   T TGRL+S  PN
Sbjct: 610 L-AATYPIASDLLSYRTLQKLKGTYIEALPKIINPRTGRIHTSFNQHITATGRLSSSNPN 668

Query: 720 LQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++T LG++IRRAFI S P   L+SADYSQIELRI A ++    L   F N  DIH
Sbjct: 669 LQNIPVRTALGKEIRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFRNGEDIH 728

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A  IFG   E++S  MRR AK +NF ++YGI PF LA +L IP+ EA   I+ Y  +
Sbjct: 729 TATAQVIFGT--EEISSDMRRKAKEVNFGVLYGIQPFGLAKRLNIPQKEAKVIIETYKAK 786

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P +   +       ++ GYV T+ GRR +  ++NS   +++   ERAA+N PIQG+AAD
Sbjct: 787 YPQLFNVLRHIIEEGKEKGYVTTLLGRRRYIADLNSRNGTVQKAAERAAMNTPIQGTAAD 846

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM   ++ ++   +A++MLLQ+HDEL+FE  + E    ++++ ++M++A +     
Sbjct: 847 IIKCAMNLCYQQMQASGMASEMLLQVHDELLFETTDSEKEALTKLVENAMKEAAVLCGMK 906

Query: 959 RVPLKVNIKVSNNWQE 974
           +VP++V+  V  NW E
Sbjct: 907 QVPVEVDCGVGKNWLE 922


>gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 822

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 304/893 (34%), Positives = 477/893 (53%), Gaps = 97/893 (10%)

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
           G P + ++G EADD+I T    +      V I + DKD+ QLV     L +T+    +D+
Sbjct: 1   GYPFLCVEGVEADDVIGTLARSSAAADRPVVIPTGDKDMAQLVDGHITLVNTMTGSVLDV 60

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE--------YGNLENI 217
             V +K+G+ PE ++   AL GD +DNIPG+PG+G KTA  LL          Y NL+ +
Sbjct: 61  AGVKEKFGVGPEHIIDYLALMGDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKV 120

Query: 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
                R   K     + E+ E A LS +L  ++ DVP+ I L+ L    C  P       
Sbjct: 121 ASLPIR-GAKTLAAKLEEHREMAFLSYELATIKIDVPLDIELDQL---HCGEP------- 169

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSL 334
                                                      DRDT ++     +F S 
Sbjct: 170 -------------------------------------------DRDTLMELYAELEFKSW 186

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
            +   + ++++  Q+L +E     ++      +Y  I+       W++KL+     +F  
Sbjct: 187 IEDLQR-DAKRAGQELTIEEPTAEAR----EAAYEVILEQGQFDAWLKKLQAAPLFAFVT 241

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            ++  DA  ++ + ++ + +   +     +   ++ +     +D+         +L  LK
Sbjct: 242 QSNGTDAQRAQLVGLSFA-IQTHEAAYIPLTHSYMGVPQQLDRDT---------VLKALK 291

Query: 455 KFFENEHFLKIGHNIKYDKLVL--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505
              E+   +K+G + K+   +L           GI ++G   D +L SYVLDS  + HD 
Sbjct: 292 PLLEDPDKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDR 351

Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI- 561
            S+  K+L++T    +EI       +  D+I+  Q   +A E +++ L+L  +   +L  
Sbjct: 352 DSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 411

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
           +  L  V   ++ P++ V++++E  G  +D +LL   S E+   + +LE   + ++GE+F
Sbjct: 412 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 471

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NL SPKQLG IL+ KL  P  +KT TGQ  T    L ++   D P+ K ++++R +SK+K
Sbjct: 472 NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLK 531

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D LP  IN RT R+HT Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P 
Sbjct: 532 STYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPK 591

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             KL++ADYSQIELRI+AH+A+   L   F N LD+HR  AAE+FGV +E V+  MRR A
Sbjct: 592 GYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSA 651

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K INF +IYG+S F LA Q+ + R ++  Y+ RYF R+PG+  Y+E+T+    + G+VET
Sbjct: 652 KAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVET 711

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           IFGRR++  +IN+   S+R   ER AINAP+QG+AADI ++AM++V+  L++  L  +++
Sbjct: 712 IFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVI 771

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDELV EV E+ +   S+ I   M  A      L VPL V + V NNW E
Sbjct: 772 LQVHDELVLEVREDLVDQISEQIRPHMSGAA----ELAVPLLVEVGVGNNWDE 820


>gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 607

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/613 (40%), Positives = 383/613 (62%), Gaps = 20/613 (3%)

Query: 372 VNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +NT + +  W+  +   G  +F   T ++D   ++ + ++++ +        +   I + 
Sbjct: 3   INTPEMLADWIDAIRAQGYVAFDTETTSLDEMQAELVGVSLALV------PGRAAYIPLG 56

Query: 431 LSVHTSQDSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             +    D    N LT+       +L+ L+   E+   LKIG NIKYD  ++ RYG+ + 
Sbjct: 57  HRMAAGDDLFADNRLTEGQLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARYGVHLA 116

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEH 541
             +D ML+SY L +G  +H +  +++++L++     KE++ S KS++  D +   +   +
Sbjct: 117 PVDDTMLLSYALHAGLHNHGMDELSERYLNHRPIPIKELIGSGKSAVTFDHVPVEKAVAY 176

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++++ L+LW   +P+L   ++  VYE L++P+I V+++ME+ G+Q+D+D L ++S  
Sbjct: 177 AAEDADITLRLWQHFKPQLPQSRVTTVYETLERPLIPVLTRMEMAGVQVDRDTLSRMSNA 236

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            ++ ++ LEE I+  +G  FN+ SPKQLG+ILF ++ F  G K K G W T A  LE + 
Sbjct: 237 FAQKMVQLEEEIHAAAGRSFNVGSPKQLGEILFDEMGFQGGVKGKNGAWGTGADVLEDLA 296

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++ +   IL+WRQ++K+KSTY D+L +HIN  + RVHT YS+A   TGRLAS +PNLQ
Sbjct: 297 T-EHALPGLILDWRQVAKLKSTYTDALQDHINPDSGRVHTSYSIAGANTGRLASTDPNLQ 355

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T+ G++IR AF++P  K L+S DYSQIELRILA IA+I  L + F+  LDIH   
Sbjct: 356 NIPVRTEEGRRIRGAFVAPAGKVLVSLDYSQIELRILAQIAQIDALKEAFQQGLDIHAAT 415

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR  A  +I RYF RFPG
Sbjct: 416 ASEMFNVPLDQMTPEIRRQAKAINFGVIYGISAFGLARNLRIPRDRAQGFIDRYFERFPG 475

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  Y+++T  F ++NG+V T+FGRRI+  EIN+ K        RAAINAPIQG+AADI R
Sbjct: 476 IRAYMDQTIAFAKENGHVRTLFGRRINTPEINA-KGPHAGFARRAAINAPIQGTAADIIR 534

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           RAMI +  ++    L  +MLLQ+HDEL+FEV E      + I    ME A  P ++L + 
Sbjct: 535 RAMIQMDPAIA--HLPARMLLQVHDELLFEVEENAADELTAIAKRIMEGAADPAVHLDIK 592

Query: 962 LKVNIKVSNNWQE 974
           L V+     NW E
Sbjct: 593 LVVDAGRGQNWAE 605


>gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6]
 gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6]
          Length = 951

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 324/1003 (32%), Positives = 510/1003 (50%), Gaps = 83/1003 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + L LVDG +  +RAF+A    + R   G P  A+ GF  +L  ++Q    E   +
Sbjct: 1   MTHTHRLVLVDGHALAFRAFHALKESNLRSSRGEPTYAVYGFAQILLSMIQ----EQQPT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           +  + FD    TFR+++Y +YKA R + PE   PQL  ++   +   IP    +GFEADD
Sbjct: 57  YVVIAFDV-GRTFRDDLYAEYKAGRAETPEEFHPQLVRIQELCRTLNIPIATAEGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDI 165
           +I T   +A  EG    I++ D D +QLV+               TT +YD  K  +   
Sbjct: 116 VIGTLARLASAEGLETLILTGDTDALQLVNAQVRVILANPYGQKTTTTIYDEAKVRE--- 172

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
               +  G+ P ++  L+ L GD+ DNIPG+ GIG K A  LL ++G +EN+  +   + 
Sbjct: 173 ----RYQGLGPHQLADLRGLKGDASDNIPGVRGIGEKGAISLLNQFGTVENLFDHLPEVP 228

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            K+ ++ +    E A  S+KL  +  DVP+ + L    + D +   +I   + LEF    
Sbjct: 229 -KRYQKPLDGQREVALFSKKLATIVADVPVQLDLAAAAIHDYDRAAVIRLFQELEF---- 283

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
                     +  I+ +    + T      +E     + +   +Q S  +         +
Sbjct: 284 -------GASSGLIKKLPEPPSPTPLPLFGVELPSSLEDSSAPTQLSFFA--------AE 328

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           TP      R   L +Y         I  + ++    Q L      +F      +  F S+
Sbjct: 329 TPAPPVATR-SALGEY-------RSITTSSELADLTQALAAAPGFAFDTEASGLRPFASQ 380

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              I+++              +++         S+G      E+++ L  FF + +  K 
Sbjct: 381 LCGISLALSPGS--------AVYVPCG-----HSSGAQLSLAEVVAALGPFFADPNKAKY 427

Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-QKWLSYTRKEILKS 523
            HN K+D  +L   GI ++G   D M+ + +L       D+A    Q     T  E L  
Sbjct: 428 AHNAKFDIEMLLGVGIEVQGLAFDTMIAAALLGKRAGLKDLAFYELQLPDPMTPIEDLIG 487

Query: 524 RKS-SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVS 581
           R +  I   ++   +   +A  ++++ L+L   L P+L     LH +Y RL+ P++ V+ 
Sbjct: 488 RGTKQISFAQVPIERATPYAAADADMTLRLVHALEPQLATTPKLHDLYRRLELPLVHVLV 547

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           QME  GI +D+  ++ +   +   + ++E+ IY ++   FN++S  QL DILF K+   +
Sbjct: 548 QMEQAGIALDKPYIEYLGQRMGTRIAAIEQEIYQIAEGPFNINSSDQLSDILFGKIGLST 607

Query: 642 GA---KTKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
                  KT ++  TA  LE++   D + I + ILE+R+LSK+KSTY D+LP  +N RT 
Sbjct: 608 EGVERTAKTKKYSITADTLERLRERDTSGICERILEYRRLSKLKSTYVDALPALVNPRTG 667

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVHT Y+     TGRL+S +PNLQNIP++T  G++IRR F++ P  + I+ADYSQIELR+
Sbjct: 668 RVHTTYNQVGAATGRLSSNDPNLQNIPVRTQEGREIRRGFVAAPGHRFIAADYSQIELRV 727

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LA+I K   L + F+   DIH   AA++FGV I++V  + RR AKT+ F +IYGIS F L
Sbjct: 728 LAYITKDPNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIYGISAFGL 787

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A +  + RSEA D I   F RFPGI +YI +T    +  G V+TIFGR+    E+ S + 
Sbjct: 788 AQRTEMGRSEAQDLINSLFTRFPGIRDYINRTLEQGQTTGVVQTIFGRQRAMPELQS-RG 846

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             R   ER AINAPIQG+AADI + AMI + ++L +  L T++LLQ+HDEL+ E PEEE+
Sbjct: 847 PRRAAAEREAINAPIQGTAADIMKIAMIKMARALSERGLRTRLLLQVHDELILEAPEEEV 906

Query: 938 TTASQIIVHSMEKAC------LPKINLRVPLKVNIKVSNNWQE 974
              ++++   M  A           +  VPL V++++  NW+E
Sbjct: 907 ALVAELVREVMAGAYSLAWHDQEGQSHHVPLGVDVEIGPNWEE 949


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 332/987 (33%), Positives = 533/987 (54%), Gaps = 80/987 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D S  IYRA++A   TP    K  G   +A+ GF N L ++++  + +    + AV
Sbjct: 10  LFLLDASMLIYRAYFAFIHTPRFDSK--GNNTSALLGFANSLIEIIKKEKPD----YLAV 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    +FR+  Y  YKA R   PE +L   P V+   +A  IPAIE+  +EADD++ T
Sbjct: 64  IFDPEGGSFRHREYTAYKAQRDATPEGILWAFPQVKRLLEALRIPAIEVPDYEADDVVGT 123

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWG-IPPEKMV 180
            +  AEKEGF V +++ DKD  QLV+    +Y   T   E      V +K+G +   +MV
Sbjct: 124 LSQRAEKEGFEVYMVTADKDYGQLVTEHALMYRPGTKGAEVWGEAEVCEKFGLVHCSQMV 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI------LINASRIKQKKRRENIL 234
              AL GD+ DNIPG  GIG K A+ LL ++G+++ I      L  + + K ++ REN L
Sbjct: 184 DYLALVGDASDNIPGCKGIGPKKASELLTQFGSIDAIYEHLDELSPSLKKKLEEGRENTL 243

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                  LSR L  + T+VP+ +  E     + N P+L + L   E   L  R+      
Sbjct: 244 -------LSRYLAKICTEVPMEVEWETFRHLEPNVPQLRALLAEFEMHTLAKRLLP---- 292

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                           N+G A +      ++  TSQ      + S+ NS  +P++     
Sbjct: 293 ----------------NEGEAADWGGGLFSSSSTSQ--DEGKEPSEANSLFSPERT--AS 332

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQ--WVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           LQ L+       +Y  +V TK+ Q+  W +  E   S  F   T+T D  +    +I ++
Sbjct: 333 LQGLTTLKDTAHTY-HVVRTKEEQKQLWARLAE---SKQFAFDTET-DGLNPLTASIVVA 387

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           +   ++      E  ++ L     +           IL  L     N   LK+  N K+D
Sbjct: 388 SFAPEEG-----EAYYLPLPQDFDEACA--------ILQPLDALMRNSEILKMAQNAKFD 434

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT--RKEILKSRKSSIPI 530
           + +L RYG+S        L+++ L +    H++ ++A+++L Y       L  +K+    
Sbjct: 435 QKLLARYGVSSATPLFDTLVAHYLIAPDQRHNLDTLAEQYLGYRTIAYSDLSEKKNFDLR 494

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +++  + ++A E+++V+ +L+ LLR KL  E+   ++  ++ P++ V+ +ME  G+Q+
Sbjct: 495 RDVAEELLVDYAAEDADVVRRLYPLLREKLEQEQQEKLFWEVEMPLVGVLERMEREGVQL 554

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS-GAKTKTGQ 649
           D   L +VS +++ +L   E+ I+  +G  FN+SSPKQ+G +LF +L   + G KTKT  
Sbjct: 555 DVQRLHEVSEKLTNDLRETEDAIFHWAGHSFNVSSPKQVGVVLFEELGLHAKGKKTKTNT 614

Query: 650 WKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           + T+ + L +  C D +PI++ IL++R L K+  TY ++LP  +     R+ T Y+ A T
Sbjct: 615 YSTSEEVLSK--CVDQHPIVQKILDYRGLKKLIGTYTEALPELVYP-DGRLRTSYNQAVT 671

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPL 767
           +TGRL+S +PNLQNIPI++ +GQ+IR AF+   ++   +SADYSQIELR++AH ++   L
Sbjct: 672 VTGRLSSSDPNLQNIPIRSAMGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHL 731

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F    D+HR  AA I+ V  E+V+P  R HAKT NF IIYGIS + L+ +L I  SE
Sbjct: 732 IKAFVEGEDVHRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYGISAYGLSQRLNIDPSE 791

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A+  I  YF  +P +  Y+++     R+ GY ET+ GRR +  +INS  +++R   ER A
Sbjct: 792 ASSLISSYFENYPAVRAYMDECVQKARKLGYTETLLGRRRYLPDINSRSATVRQFAERNA 851

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQG+AAD+ + AMI +   + +  + ++M++Q+HDEL F+    E+     ++   
Sbjct: 852 VNAPIQGTAADLIKVAMIRIDAKMRERNMKSRMIMQVHDELNFDAYLPEVDELRALVHQE 911

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M   C    NLRVPL+V I V ++W E
Sbjct: 912 M---CQAIPNLRVPLEVEIGVGSSWLE 935


>gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273]
 gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273]
          Length = 945

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 331/981 (33%), Positives = 518/981 (52%), Gaps = 81/981 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           LF++DG + +YRA++A      K  DG P  A+ GF + L ++ ++        + A  F
Sbjct: 31  LFIIDGMALLYRAYFALLRAGMKTRDGRPTGALYGFMSTLLRIFESYHPR----YLAAAF 86

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D    TFR++I+P+YKANR   PE +  Q+ PL  L  +A GIP +   GFEADD+I T 
Sbjct: 87  DSREKTFRHDIFPEYKANRTAPPEEMTGQIEPLFEL-LRALGIPILRTPGFEADDLIGTA 145

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMV 180
               E +  ++ I++ DKDL QLV     L    K +     +    V +++G+PPE+  
Sbjct: 146 AKEFE-DACSIYIVTPDKDLAQLVHDGVKLLRPSKNQNELQLMGPREVEEQFGVPPEQFT 204

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               LTGD+ DNIPG  GIG KTA  LL  +G+LE +  +   +  K R+ ++  +    
Sbjct: 205 AFLTLTGDTSDNIPGAEGIGPKTATSLLARFGSLEEVYRHIEELTPKVRK-SLEAFRPRL 263

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +L   LV +RTD+ + + LE L     +   L+  L  LE   + +R+   +        
Sbjct: 264 QLITDLVTIRTDLALHVTLEELRCTTPDRHELLELLGKLELRSIASRLPAAF-------- 315

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                       G+A+E              S   D      +E+T  +      ++L  
Sbjct: 316 -----------PGLAVE--------------SPAGDPARTAGAEKTAAET-----EELGD 345

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +  D Y  I     ++++V+++      +    T ++D F ++   I+IS    K   
Sbjct: 346 PRLGAD-YGMIATEDLLREFVREMLQTDKIAVDTETTSLDTFEAELAGISISAEPAK--- 401

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  FI  +        G        +  L+   EN    K G N+KYD LVL  YG
Sbjct: 402 -----ARFISFA--------GTGLDRGRSIEILRPLLENPAIPKTGQNLKYDILVLKNYG 448

Query: 481 ISMR--GFEDIMLMSYVLD-SGRSS-HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           + +   GF D ML SYVLD  G+ +  D+A++  +  +    E+  + K+ + I  +  +
Sbjct: 449 LELGPVGF-DTMLASYVLDPDGKHNLDDMAALHLRLKTTKYDELTGTGKNRLHIYDVEPA 507

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++ ++A +++++ LQL       L  E +L+ + + ++ P++ V+++ME  GI ID   L
Sbjct: 508 KLTDYACQDADLALQLEGAFTRNLEAEPRLMELCQTIEFPLVSVLAKMEHQGISIDSKHL 567

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           ++ S  +   L SL E I+  +G  FN+ SPKQL  ILF  L  P+   TKTG + T  +
Sbjct: 568 EETSMAVGHQLESLRETIHAAAGTDFNIDSPKQLSHILFNVLGLPTKKTTKTG-FSTNVE 626

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    +P++ ++L +R L K+K+TY D+LP  +N RT RVHT ++   T TGRL+S
Sbjct: 627 VLEEL-APLHPVVSDLLLYRSLQKLKTTYIDALPKMVNPRTGRVHTSFNQHVTATGRLSS 685

Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
             PNLQNIPI+T LG++IR+AFI + P   L+SADYSQIELRI A I+    L + F N 
Sbjct: 686 SNPNLQNIPIRTPLGREIRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLIEAFRNG 745

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIH   A  IF  + E ++  MRR AK +NF ++YGI PF L+ +L IPR+EA + I  
Sbjct: 746 LDIHAETARVIF--DTEDITADMRRKAKEVNFGVLYGIQPFGLSKRLNIPRNEAREIIDT 803

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y  ++PG+   +E      R+NG+V T+ GRR +  ++ S  S+++   ERAA+N PIQG
Sbjct: 804 YREKYPGLFSSLEGVIEEGRKNGFVTTLLGRRRYLRDLTSRNSNVQKAAERAAMNTPIQG 863

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM-EKACL 953
           +AADI + AM    + ++   + + MLLQ+HDELVFE  E+E      ++  +M E A L
Sbjct: 864 TAADIIKCAMNLCSRRIDAASMQSVMLLQVHDELVFETTEDEKEGLKSLVEEAMIEAAAL 923

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             +   VP+ V+  +  NW E
Sbjct: 924 CGLK-NVPVAVDTGIGKNWLE 943


>gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 936

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 337/989 (34%), Positives = 521/989 (52%), Gaps = 80/989 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N + LVDGS +I+RA++A P L    DG PV  I G  NM+  LL   +     +H  V+
Sbjct: 7   NPIILVDGSCYIHRAYHAFPELITS-DGKPVWVIYGVINMIKSLLIRYQ----PTHMVVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFRN ++  YKANR K P+ L  Q+ PL  +  QA G+  +++   EADD+I T
Sbjct: 62  FDAMGKTFRNNLFEKYKANRMKTPKHLYTQIDPLCEI-IQAMGLSILKVPDVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G +V I + DKD+ Q+VS    L +T+       + V K++G+PP  +    
Sbjct: 121 LAISCARSGNSVLISTGDKDMAQIVSSQITLINTMSNIIFTPKEVEKQFGVPPTLIADYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE------------NILINASRIKQKKRRE 231
           AL GD  DNIPG+PGIG KTA +LL + GNL+            N+ +  +R  Q   + 
Sbjct: 181 ALIGDRSDNIPGVPGIGKKTAQILLNKIGNLKLLYDHLDKISLLNLGLRGARAIQNTLQA 240

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N     E A LS KL  ++TDV + I    L+++  N   L       EF   +      
Sbjct: 241 N----KEVAFLSYKLTTIKTDVSLNISDYQLLIQQLNINTLQLLFTEYEFKNWL------ 290

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                       ID  +    +++  L    S      T   L 
Sbjct: 291 ----------------------------IDLQSGTWLNKYHHLKHVPSHRRLNNT---LL 319

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            ++   LS Y         I NT+ +  W++K++      F I TD  +   +  I+I +
Sbjct: 320 FQKNNLLSDYSKEKKIIKIICNTEMLFNWIEKIDESKFFIFSIHTDVFNVATANIISICL 379

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S +D K+     ++T     S++  Q+        +EILS L+   ENE   K+G ++K+
Sbjct: 380 S-IDTKESAYIPIKTD----SINNHQNFL----YLEEILSILQPTLENEKIKKVGQHLKF 430

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
              +L RY I++ G   D++L  Y+L    + HDI +   K          K+  +    
Sbjct: 431 SYSILKRYNINLAGMAFDVILELYILYGTANYHDIKNFLDKDTFNVVTNFKKNYDNYNEN 490

Query: 531 DKISDSQ-VQEHAIENSNVILQLWLL---LRPKLIVE-KLLHVYERLDKPMIDVVSQMEI 585
           + +SD Q +Q  ++  +  I  L+ L   L PK+    KL  ++E ++ P+I ++S++E 
Sbjct: 491 NILSDLQNIQLQSLYAAKFIKSLFNLHHTLWPKIEANNKLKKIFEEVEMPLISILSRIEN 550

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G+ ID+ LL   + E+   L +LE   Y L G  FNL+S KQL +IL+ + K P   KT
Sbjct: 551 YGVLIDKKLLNTHAVELDYRLHALELEAYQLVGTPFNLASTKQLQEILYNQQKLPILKKT 610

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             G   T  + L++++     + + IL++R LSK++STY + L   INK++ RVHT Y+ 
Sbjct: 611 PKGAPSTNEEVLKKLS-KKYSMPRIILQYRALSKLQSTYINKLIAMINKKSNRVHTSYNQ 669

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S  PNLQNIP +   G+KIR+AFI+P    +++ADYSQIELRI+AH+++  
Sbjct: 670 TRTSTGRLSSTSPNLQNIPNRNYDGRKIRQAFIAPKNFLIVAADYSQIELRIMAHLSQDI 729

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F +  DIH   A+EIF   +  V+ + R+ AKTINF +IYG+S F LA QL +  
Sbjct: 730 ELINDFLSEKDIHTATASEIFVTALHLVTDEQRQRAKTINFGLIYGMSAFGLARQLSVTC 789

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  Y+ RYF+R+PG+ +Y++  +    + GYV T+ GRR++  +I S     +   ER
Sbjct: 790 KEAQKYVDRYFNRYPGVMKYMQHIREHANKYGYVSTLDGRRLYLPDIYSANILQKKGAER 849

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QGSAADI ++AMIS+   L+  ++  ++++Q+HDELVFEV  + +    + I 
Sbjct: 850 AAINAPMQGSAADIIKKAMISIDNWLQKDEIPARIIMQVHDELVFEVHNDIVDPVVKKIK 909

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME+  +    + VPLKV++ +  NW++
Sbjct: 910 KLMEECFI----MDVPLKVDVGIGKNWEQ 934


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 247/620 (39%), Positives = 368/620 (59%), Gaps = 19/620 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST-------LDQKDDT 420
           Y  + + + ++ WV +   IG  +F   T  +D   ++ + ++++T       +  K D 
Sbjct: 314 YELVTSVEVLEAWVAEATRIGQVAFDTETTGLDPLRAELVGVSLATAPGRACYIPIKHDA 373

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                ++ +D     S  + G + L +E+ L+ L     +   LKIGHNIKYD  V+ + 
Sbjct: 374 GPAQGSLLLD----PSPAAAGPDILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA 429

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           G+++  F+D ML+SYVLD     H +  +A+  L +      ++  + K+ I  D++   
Sbjct: 430 GLTVTAFDDTMLLSYVLDGASHGHGMDELAKLHLDHDTIKFADVCGTGKNQITFDRVPLD 489

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E++++ L+L   L+ +L+ E+++ VYE L++P++ V+  ME  GI++D+  L 
Sbjct: 490 KALAYAAEDADITLRLHGALKARLLAERMVTVYETLERPLVPVIVAMEAAGIKVDRTALM 549

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +SAE    +  LE  I +L+G +FN+ SP+QLG +LF  +  P G KTKTGQW T A  
Sbjct: 550 ALSAEFGGRMAELEVQIQNLAGREFNVGSPQQLGKVLFENMSLPGGKKTKTGQWGTGADA 609

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++    + +   +L+WRQLSK+K TY D+L   IN RT RVHT ++LA T TGRL+S 
Sbjct: 610 LEELAAQGHDLPARVLDWRQLSKLKGTYTDALVAQINPRTGRVHTSFALALTTTGRLSSS 669

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+++ G+KIR AFI+ P   L+SADYSQIELR++AH+A I  L Q F +  D
Sbjct: 670 DPNLQNIPIRSEEGRKIRHAFIAEPGHVLLSADYSQIELRLVAHVACIKGLIQAFHDGAD 729

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH + AA++FGV +E + P +RR AK INF IIYGIS F LA QL I   EA  YI  YF
Sbjct: 730 IHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIYGISAFGLAQQLGISNGEAKSYIDAYF 789

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P I +++E+TK   R NG+V T FGR++    I     ++R   ERAAIN PIQG A
Sbjct: 790 GRYPEIRDFMERTKEEARANGFVLTPFGRKVFTPGIKDKNGAMRAFAERAAINGPIQGGA 849

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAMI +  +L    L  ++LLQ+HDELV EVP  E      ++   ME A     
Sbjct: 850 ADIIKRAMIRLPAALAAEGLKARLLLQVHDELVLEVPVAEQDATRAVVCRVMESAA---- 905

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL        +W + +
Sbjct: 906 QLDVPLVAEAGFGTSWGDAH 925



 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/287 (49%), Positives = 193/287 (67%), Gaps = 5/287 (1%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            H+FLVDGS FI+RAF+  P +SR  DG PVNA+ GF  ML KLL ++     A H AVI
Sbjct: 9   QHVFLVDGSGFIFRAFHGLPAMSRP-DGTPVNAVYGFTTMLLKLLSDTD----ADHVAVI 63

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   ++FRN+IYP+YKA+RP  PE L+PQ PL+R    AF +P++E++GFEADD+IATY
Sbjct: 64  FDAGRLSFRNDIYPEYKAHRPPAPEDLVPQFPLIRDVVAAFNVPSVEMEGFEADDLIATY 123

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  VTI+S+DKDLMQLV     + DT+K   I    V++K+G+ P+++V +QA
Sbjct: 124 ATQAVARGARVTIVSSDKDLMQLVGERVEMLDTLKNRTIRAPEVLEKFGVAPDRVVDVQA 183

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD  DN+PG+PGIG KTAA L+ EYG+L+++L  A  IKQ KRRE +L  AE AR+SR
Sbjct: 184 LCGDPTDNVPGVPGIGVKTAAQLIGEYGDLDSLLARAGEIKQPKRRETLLNNAELARISR 243

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           +LV L+ DVP+T  L+       +   L  FL A  F  ++ R+  +
Sbjct: 244 ELVRLKCDVPVTESLDSFAKRPFDRQVLADFLAAQGFKSIVARLGGS 290


>gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi]
 gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi]
          Length = 1085

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 340/1031 (32%), Positives = 546/1031 (52%), Gaps = 104/1031 (10%)

Query: 4    ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            E  + LVDG+  + RA++ TP L+   +G P NAI  F   L  +L++   +    H A+
Sbjct: 93   EKKILLVDGTPLVVRAYFGTPPLTSS-NGTPTNAILTFAKSLIAILKSDEFD----HVAI 147

Query: 64   IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             FD    + R  I  DYKANR    + L  Q P+ +L  +  G+  I   GFEADD+IAT
Sbjct: 148  FFDSGKPSIRKSISSDYKANRKPTEDNLKKQFPICKLLAEKMGLKVISKDGFEADDLIAT 207

Query: 124  YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
                A+ E F ++ ++S+DKDL  L      L D + ++K+ ++ +I K+ +PP+ +   
Sbjct: 208  VARQAKDEKFNSIVVVSSDKDLHCLSDTNLTLLDPMTKKKLTMDDIIGKYELPPKLIPEF 267

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS-RIKQKKRRENILEYAETAR 241
             AL GD+ DNI G+ GIG K A  LL++YG++  IL N      +KK RE I    +  +
Sbjct: 268  LALVGDTADNIKGVKGIGKKKAVSLLEQYGSISEILNNLDDENMEKKSREAIKSNIDDLK 327

Query: 242  LSRKLVMLRTDVPITIPLEHLILEDCN-----GPRLISFLKALEFTKLINRVATTYDCDA 296
            LS +LV L  +VP+   L+   ++  +        LI  L+ LE   +I ++    D   
Sbjct: 328  LSLRLVALDEEVPLDYSLQDFQVDQSSLDFSQNEELIKMLEDLEINSVIKQLKKETDKKE 387

Query: 297  ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               +         E+    + +E      + + + S +SD  SKI            ++ 
Sbjct: 388  KTTKSKSKKKEVIES---VVLSEEMSSADVASLKLSHVSDD-SKIG-----------KIV 432

Query: 357  KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            K S+Y I       I+N K++  ++++++  G+  F      + + H+ P+   IS    
Sbjct: 433  KASEYNI-------ILNEKELDSFIEQVKISGNVCFSTEI-CLLSLHN-PVMAGISFCIS 483

Query: 417  KDDTSF-------KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
                 +       KVE  F+D SV+  ++S   + +  EI+       EN + LKIGHNI
Sbjct: 484  PGQAYYLPFFKGGKVE--FLD-SVNILKESPILSKVRTEIM-------ENPNILKIGHNI 533

Query: 470  KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-------RKEILK 522
            KY   +L  YG++++ F+DIM+MSYVL+ G+  H++  I +  L           KE+L 
Sbjct: 534  KYHIKMLANYGVTVKNFDDIMVMSYVLNCGKHGHEMDEIVENVLLLDPKEHIIPEKEVLG 593

Query: 523  SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVS 581
              K  + + +     V   A +++++  Q + +L+  L    KL   YE ++KP+++ ++
Sbjct: 594  IGKKKVTLMEADIVSVVHFACQHADLTKQAYDVLKSALDKSPKLTQFYEGIEKPLVETLA 653

Query: 582  QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG----------------------- 618
             +E+ G+ +D+  L ++  E  + + ++   I + +G                       
Sbjct: 654  GIEMKGVFMDEPALVKMENEYREKIKAIGNKIREDAGYPTIDEDIEIPTSEEEIESMIIE 713

Query: 619  ---------EKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTTAQDLEQINCGDNPI 667
                     E+FN++S +QLG ++F KL   +    KTK G +   A+ L+++    + I
Sbjct: 714  MDEMKQEASEEFNINSNRQLGQVIFEKLGIGTKLRKKTKVGDYILNAEVLQKLAAEGHSI 773

Query: 668  IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
             K+ILE+R L+K+ STY   L  HIN  T+R+HT +  A T+TGRL+S+ PN+QNIP++T
Sbjct: 774  AKHILEYRALTKLYSTYISGLRQHINPYTKRIHTTFQNALTVTGRLSSVMPNIQNIPVRT 833

Query: 728  DLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
              G++IRR FISP    +I   DYSQ+ELRILAHIA I  L   F+ + D+H + A+++F
Sbjct: 834  AEGKQIRRCFISPSDDYVIMKVDYSQVELRILAHIANIPVLKNAFKENKDVHAITASQVF 893

Query: 787  GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
             V +++V    R  AK INF IIYG+S F L+ ++ +    A  +I++YF ++PGI  Y+
Sbjct: 894  NVPLDQVDKSTRNKAKAINFGIIYGMSEFGLSKRIGVDTQAAKSFIEQYFKQYPGIKNYM 953

Query: 847  EKTKNFVRQNGYVETIFGRRIHY----DEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             KT  F R++GYV T+F RR       D+    KSS     ER +IN PIQG++ADIT+ 
Sbjct: 954  TKTIEFCRKHGYVNTLFNRRCWIPGIEDQGFGGKSS---FGERTSINTPIQGTSADITKI 1010

Query: 903  AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC-LPKINLRVP 961
            AM S+HK+ ++  L T+M++Q+HDE+VFEVP++E+ T   II   ME A      N  VP
Sbjct: 1011 AMNSLHKAFQEKGLRTRMIIQVHDEIVFEVPKDEVETVEPIIKELMEGAAFFGGTNFTVP 1070

Query: 962  LKVNIKVSNNW 972
            L V   V + W
Sbjct: 1071 LTVEATVDSKW 1081


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 349/1021 (34%), Positives = 536/1021 (52%), Gaps = 115/1021 (11%)

Query: 7   LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG S  +RA+YA       PL  R   G+P +   GF N L + ++    + IA  
Sbjct: 10  LMLIDGHSLAFRAYYAFAKARKGPL--RTSTGIPTSVCFGFLNSLIQAIKLENPQYIA-- 65

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD    TFR+E   +YKA+R + PE  +P +  ++   +A  I  I   G+EADD+
Sbjct: 66  --IAFDSKEPTFRHEADVNYKADRKETPEDFIPDILNLQRLLEALNITIITAPGYEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE------KIDIEHV 168
           + T      +EG+ V I+S D+DL QLV+     + LY   + VK        + ++E V
Sbjct: 124 LGTVATKGSQEGYRVKIVSGDRDLFQLVNDDNHLSVLYLERNAVKSSSGEGYTEFNVEAV 183

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--- 225
            +K GI P +++  +AL GD  DNIPG+ GIG KTA  LL EYG LE +  N   IK   
Sbjct: 184 TEKMGIKPTQVIDYKALCGDKSDNIPGVRGIGEKTAVKLLSEYGTLEAVYNNIEEIKGAN 243

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           QKK +E   E    A  S+ L  + TD P+   +E   L+  N   +   L+ LE  K I
Sbjct: 244 QKKLKEGKKE----AEHSQYLAEIVTDAPLEFQIERCELKGFNFDAVKPILEELELKKFI 299

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS-- 343
             +    +    NI              + +  +I+++ T + S F  + ++   +N+  
Sbjct: 300 KEINQLQEHFGGNIT-------------LEVHEKINKNETHQLSIFDDVPEKVEPVNNIK 346

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT----M 399
           E+T + L            IN    T+I   + + + V KL T  +A+  +  DT    +
Sbjct: 347 EETKESL------------INPQIITEI---EQLHELVDKLSTFTNANIPVAWDTETTDL 391

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           +   +  + I     +   D ++        + +   Q   GK    +++L  L+   E+
Sbjct: 392 NPRQANLVGIGCCWGNNPTDIAY--------IPIGHKQ---GKQLKKEQVLDSLRTILES 440

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL----S 514
             + K+  N K+D+L+     I++ G   D ML SYVL   +S H ++ + +++L     
Sbjct: 441 SDYPKVFQNTKFDRLIFKHQAINLDGVVFDTMLASYVLHPEKS-HKLSELCEQYLEGITC 499

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLD 573
               E+  S+K +I    +   +V E+   ++     L   L+ +L  V  L  +   ++
Sbjct: 500 QNYDELGISKKQTIA--DLDIEKVAEYCGMDAYGTFLLVEPLKNELQQVPTLEQLLLEVE 557

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
           +P+  V+S ME TGI ID + L ++S E+ + L SLE+  YD + EKFNL SPKQLG+IL
Sbjct: 558 QPLEAVLSIMEDTGILIDTEYLGKLSKELEQELSSLEKKAYDAAEEKFNLGSPKQLGEIL 617

Query: 634 FTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           F KL+       KTKTG + T    LE++  GD+PII  ILE+R LSK+KSTY D+LP  
Sbjct: 618 FEKLELNRKKSRKTKTG-YSTDHATLEKLK-GDHPIIDYILEYRTLSKLKSTYIDALPEL 675

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           +NK+T+R+HT ++ + T TGRL+S  PNLQNIPI+T+  ++IR+AFI      L+SADYS
Sbjct: 676 VNKKTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYS 735

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH+++ + L   ++N+ D+H + A  +F    E+++PQ R   KTINF +IYG
Sbjct: 736 QIELRILAHLSQESVLLNAYQNAEDVHTVTAKLLF--EKEEITPQERNLGKTINFGVIYG 793

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +   R A +  +  +E  ++I +Y  R+  + EY+E  K     NGYV TI GRR +++ 
Sbjct: 794 MGSQRFAREAGVSATEGKEFINKYRQRYAKVFEYLENMKKEAIANGYVTTILGRRRYFNF 853

Query: 872 INSPKSSIR------------NINE------RAAINAPIQGSAADITRRAMISVHKSLED 913
            +      R            NIN       RAA NAPIQGS+ADI + AM+ + + L  
Sbjct: 854 FDDNLYRFRGHDPQTIDLNKLNINYNDSQLLRAAANAPIQGSSADIIKIAMVKIQEILNY 913

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           ++    +LLQ+HDELVFE+PE+E    +  I  +ME A    + L +PL V I    NW 
Sbjct: 914 YQ--ANLLLQVHDELVFEIPEKEWEELNHKIKETMENA----VKLTIPLVVEIHAGKNWM 967

Query: 974 E 974
           E
Sbjct: 968 E 968


>gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 485

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/456 (50%), Positives = 324/456 (71%)

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           ++  + ++ +  ++++  +   +A E+++V L+LW +++P+L+ E+ + VYE L++P++ 
Sbjct: 28  DVAGTGRNKVTFERVAIDKATAYAAEDADVTLRLWRMMKPRLVAERRVTVYETLERPLVP 87

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME  GI+ID+++L ++S + S+ L  LEE I + +GEKF +SSPKQ+GD+LF KL 
Sbjct: 88  VLARMERAGIRIDRNMLSRLSGDFSQILARLEEEIQEDAGEKFQVSSPKQIGDVLFGKLG 147

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT +GQW T A  LE++    + + K IL WRQL+K+KSTY DSL  H ++ T R
Sbjct: 148 LPGAKKTPSGQWATPATLLEELAQAGHELPKKILNWRQLAKLKSTYTDSLQEHADRETNR 207

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT +SLA+T TGRL+S EPNLQNIPI+T+ G++IRRAF++P  KKLISADYSQIELR+L
Sbjct: 208 VHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLL 267

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AHIA I  L + FE  LDIH   A+ +FGV +++++  +RR AKTINF IIYGIS F LA
Sbjct: 268 AHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFGIIYGISAFGLA 327

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L I R EA+ +IK+YF RFPGI +YI+ TK   R+ GYV T+FGR  HY +I S   S
Sbjct: 328 DRLGIGREEASAFIKQYFERFPGIRDYIDTTKKSCREKGYVTTLFGRVCHYPQIRSNNPS 387

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAPIQG+AADI RRAM  +  +LE  +L  +MLLQ+HDELVFEVP++E+ 
Sbjct: 388 ERASVERQAINAPIQGTAADIIRRAMTRMEAALEAKRLTARMLLQVHDELVFEVPDDEVE 447

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +I   ME+A  P + L VPL V  + + NW+E
Sbjct: 448 ATIPVIAEVMEQAPAPALTLSVPLVVEARAAGNWEE 483


>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
 gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
          Length = 938

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 332/1001 (33%), Positives = 522/1001 (52%), Gaps = 106/1001 (10%)

Query: 7   LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L LVDG S  YRA++A      T L  R   G P +   GF  +L   ++  R     S 
Sbjct: 9   LLLVDGHSLAYRAYFAYVRGGETGL--RTSGGTPTSVSFGFLKLLLDAIERDRP----SM 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+E+   YK+ R + P+  +  L  +R    A  +P  E+ G+EADD+
Sbjct: 63  VAVTFDTRMPTFRHEVDATYKSGRAETPDEFIDDLQNLREILTALDLPQFELPGYEADDL 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---------EEKIDIEHVIKK 171
           I T       +G+ V I+S D+DL QL++       +++          E+     V +K
Sbjct: 123 IGTLAVHGAGQGYDVKILSGDQDLFQLITDEGAPGGSIRVLHQNTRTGTEEFGPAQVKEK 182

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KK 228
            GI P ++V  +AL GDS D IPG+ GIG K+A  LL+EYG+L  ++     I     KK
Sbjct: 183 LGIAPRQVVDYKALCGDSSDRIPGVRGIGAKSAVKLLEEYGSLAQLIEAVDTIPGALGKK 242

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI--- 285
            +E +    E AR S  +  + T+VP+ +  E   L   +  R+   L+ LEF   +   
Sbjct: 243 LKEGV----EDARHSYWMATIETNVPLVVDFEACRLVGFDAERVAPLLEKLEFRSFLRQL 298

Query: 286 NRVATTYDCDAANIEPVVLD---INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
            R+  ++     +  P  L+    N     G A E E+  D       F+          
Sbjct: 299 QRLQRSFGG-TPSARPTALNEDADNPLAGIGTASEDELWFD-------FAP--------- 341

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNT-KDIQQWVQKL-ETIGSASFKIITDTMD 400
                               +  D   ++V T +D Q ++  L    G  ++   T+ +D
Sbjct: 342 -------------------SVPMDLEVRVVQTAEDFQAFLDALLAQDGLVAWDTETNNLD 382

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
             H++ + I           +++    +     H      G N  T  +++ L  ++++ 
Sbjct: 383 PRHARLVGIG---------CAWEPGVAYYLPLAHQQ----GSNLETDAVVAALTPYWQDR 429

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              K+  N KYD LVL  YG+++ G   D ML SYVLD     H++ ++AQ  L  T   
Sbjct: 430 ERPKVLQNAKYDWLVLRNYGVALAGIAFDPMLASYVLDP-EGKHNLMTLAQNHLQIT--- 485

Query: 520 ILKSRKSSIP----IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDK 574
            + S ++ +P    ID +  + V  +  E++ V L+L  +L+ KL  + +L  +++ ++ 
Sbjct: 486 -MGSYEALVPKGQTIDAVEIAAVSRYCGEDAAVTLRLVPVLQAKLDEDPRLAGIFKEIEV 544

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+  V+++ME  GI+ID+  L +++ E+ ++L SLE+  Y L+G KFNL SPKQL D+LF
Sbjct: 545 PLEPVLARMEERGIRIDKAYLGELAQELDRDLESLEQEAYTLAGSKFNLGSPKQLSDLLF 604

Query: 635 TKLKFPSGAKTKTG-QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            KL   +    KT   + T A  LE++   D+PI++ IL +R L+K+KSTY D+LP  ++
Sbjct: 605 NKLGLSAKKSRKTSLGYSTDAAVLEKLR-DDHPIVEAILSYRTLAKLKSTYVDALPLLVD 663

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            RT RVHT ++   T TGRL+S  PNLQNIP++T   ++IRRAF+  P   L++ADYSQI
Sbjct: 664 PRTDRVHTDFNQTVTTTGRLSSSNPNLQNIPVRTSFSRRIRRAFVPEPGWLLVAADYSQI 723

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRILAH+ +   L + F+   D+H + A  + G   E+V+ + RR AK IN+ ++YG+ 
Sbjct: 724 ELRILAHLTQEPVLLEAFQTGGDVHTLTARLLLGR--EEVTSEERRLAKIINYGVVYGMG 781

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             R A +  +  +EA D+IK ++ R+P +  ++E+T+    + GYVET+ GRR ++  + 
Sbjct: 782 ARRFARETGVSATEAEDFIKAFYRRYPAVFGFMEQTRRMAVEQGYVETLLGRRRYFRGLG 841

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
                 R    RAA NAPIQG+AADI + AM+ + ++L   +  T++LLQ+HDELVFE+P
Sbjct: 842 QLNQRDREGALRAAFNAPIQGTAADIIKIAMVRLEQTLAGRR--TRLLLQVHDELVFEMP 899

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EE      +I   ME A    ++L VPLKV +    NW E
Sbjct: 900 PEERPEVEPLIRSGMENA----LDLLVPLKVELNAGPNWLE 936


>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
          Length = 953

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 326/1005 (32%), Positives = 517/1005 (51%), Gaps = 91/1005 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           MQ+   L LVDG +  +RAF+A     +S +  G P  A+ GF ++L  LL+  + E +A
Sbjct: 1   MQQRPTLVLVDGHALAFRAFFALRDTGMSVRATGEPTYAVQGFLSILLNLLRERQPEYVA 60

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             F +       TFR+++YPDYKA R + P    PQL  ++    A  IP    + +EAD
Sbjct: 61  VSFDI-----GRTFRDDLYPDYKAGRAETPADFHPQLERIKQIINALNIPIYTAENYEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-----YDTVKEEKIDIEHVIKKW- 172
           D+I T    AE +G    II+ D D +QLV+  T +     Y        D   V +++ 
Sbjct: 116 DVIGTLCRQAEAQGVDTLIITGDTDTLQLVNDYTKVLLANPYGKGNVSLYDEAQVRERYK 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P ++  L+ L GD+ DNIPG+ GIG   A  +L E+G++ENI  N  ++   + R  
Sbjct: 176 GLAPNQLADLRGLKGDTSDNIPGVKGIGEAGAISMLNEWGSVENIYANLDKVA-NRYRSK 234

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +    E AR S  L  + T+ P+T+ LE   + D +   +++    LEF KL++++  + 
Sbjct: 235 LDGQQEAARFSTHLATIVTNAPVTLDLEATKVHDYDRDTVLALFSQLEFRKLVDKLPLSS 294

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              A  +              +AI        T   +Q +   D T              
Sbjct: 295 QVSAVQV--------------VAIPQ------TTNPNQLTMFDDATPP------------ 322

Query: 353 ERLQKLSQYPI-NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                 S  PI  +  Y  +  ++ + + V+ L       F + T++++ F   P  +  
Sbjct: 323 ------SAEPIAQSGDYQAVTTSEQLAELVRILTAAERLIFDVETNSLNLFSPVPAKVVG 376

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
             L       +     +I L  H S    G+     E+++ L+  F +     + HN K+
Sbjct: 377 IALTHTAGCGW-----YIPLG-HRS----GQQLPIAEVVAALQPLFSDPQKAVVAHNGKF 426

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA-----SIAQKWLSYTRKEIL-KSR 524
           D   L   G+ +     D  + + +L   +S  D+A         + +  TR E L  + 
Sbjct: 427 DMSALSLIGLDVPHLSFDTAIAAALLGKRQSLKDLAFAELRDADDRPIEMTRIETLIGTG 486

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQM 583
           K  I +D+++  QV  +A  + ++  +L  L  P+L  +  +  V+E+++ P+  V+ +M
Sbjct: 487 KKQITMDQVAIEQVTPYASADVDMTARLLALFMPQLGAIPAVREVFEQIEMPLSPVLMRM 546

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG- 642
           E  GI +D+  L Q    + ++L  +E++I D  GE  N++S   L D+LF +LK P+  
Sbjct: 547 EACGIGLDRAQLVQQGQVLGQSLREIEQHIADFVGEPLNINSRFDLNDLLFIRLKLPTAN 606

Query: 643 -----AKTKTGQ--WKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINK 694
                  T++G   +   A+ LE +   D + I+  IL +R+LSK+KSTY D+L   IN+
Sbjct: 607 LKRLAGTTRSGGAVYSVNAETLEDLQTHDQSGIVAMILRYRRLSKLKSTYVDALIELINQ 666

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +T RVHT Y      TGRL+S  PNLQNIP++++ G++IRRAF++ P   L++ADYSQIE
Sbjct: 667 QTGRVHTQYRQIGAETGRLSSDSPNLQNIPVRSEEGREIRRAFVARPGHVLMTADYSQIE 726

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LAHI     L +VF+   DIH   AA +F + +++VS   RR AK   F IIYGIS 
Sbjct: 727 LRVLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIYGISS 786

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE--- 871
           F LA +  + R+EA   I   F ++PG+  YIE+T   V+  GYVET+FGRR ++ E   
Sbjct: 787 FGLAARTALSRTEAQQMINGLFAQYPGLKSYIERTLERVKAVGYVETLFGRRRYFRELQD 846

Query: 872 --INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
             +  P+   R+  ER A NA IQG+AAD+ + AMI + ++L       KMLLQ+HDELV
Sbjct: 847 GGVTGPR---RSAFEREATNAGIQGTAADLIKLAMIRLEQALIAGGYQAKMLLQVHDELV 903

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EVPE+E    +Q++  +M +   P  +L VPL+VN++   NW +
Sbjct: 904 LEVPEDERDAVAQLVCDTMTQ-VYP--DLAVPLEVNVETGLNWDQ 945


>gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 896

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 327/983 (33%), Positives = 514/983 (52%), Gaps = 109/983 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L DG++  YR +Y   +      G P NA+ G   ML K  +   K    + FA  FD
Sbjct: 5   LYLFDGTAIFYRGYYGIDVTLTNSKGEPTNALFGTARMLSKFTRERMKNGDYAIFA--FD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              +T R+  Y  YKA R  +P+ L+ QL  V    +AFGI  + I G EADDI+AT   
Sbjct: 63  RKELTKRHVAYESYKATREAMPDALVAQLKDVPELVEAFGIKFLSIAGIEADDIVATAAK 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
               +   V +I+ DKDL+QLV          T L D    +  D E V+ ++ + PE++
Sbjct: 123 KYRDKVDEVLVITGDKDLLQLVDDKVHILRFVTGLTDL---DLYDREKVLSRYELEPERL 179

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L +L GDS DNIPG+PGIG KTA  LL+EYG++E I  N  ++    R++ +++   +
Sbjct: 180 HALLSLAGDSSDNIPGVPGIGIKTAQKLLKEYGDIEGIYANIRKLSPGLRKK-LIDGRSS 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             LS +LV L  +  + I L+ +  E      L      LEF+ ++N    T   D +  
Sbjct: 239 LELSMELVKLLDNEDLNIELDDIKYEGFRKNDLRKIFLKLEFSSMMNEFNLTDKADDSF- 297

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                              EID    +K               SE   ++LF    +KL 
Sbjct: 298 ------------------AEIDGYRLVK---------------SENELERLF----EKLV 320

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             PI                +   LE          T ++D   +K + ++IS     D+
Sbjct: 321 SNPI----------------FAIDLE----------TSSLDPHCAKIVGVSISI----DE 350

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            S           +  + +S G       +L  LKK  E+     IG N+K+D  VL   
Sbjct: 351 GS--------GYYIPIAHESDGWQADRDYVLKNLKKLLEDRSTKIIGQNLKFDYSVLAVN 402

Query: 480 GIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           GI   +  F D ML +Y+L       ++  +A K+L Y     ++++K  +      K+ 
Sbjct: 403 GIHPVVPDF-DTMLAAYLLSPDAKRFNLDELAMKFLGYKTIKFEDLMKKNQLGDDFTKVP 461

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +++E++++ L+L  +LR K+  ++L  ++ +++  +I V++ +E+ G+  D   
Sbjct: 462 LEEAARYSVEDADISLRLSSVLRKKIYEQELEEIFRKVELALIPVLADLELNGVYFDVPS 521

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK +S +  K L  + E ++DL+GE+FN +SP Q+G +LF +L      KTK G + T+A
Sbjct: 522 LKNLSEKYGKILDKILEELFDLTGEQFNPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSA 581

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE+I   ++P ++ +L++R+  K+KSTY DSLP  +NK T R+HT Y    T TGRL+
Sbjct: 582 DALEEI-ADEHPAVQKLLDYRKYQKLKSTYLDSLPELVNKVTGRIHTSYHQTGTGTGRLS 640

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFE 772
           S  PN+QN+PI+ + G++IR+  I P  K  K++SADYSQIELRILAH+++   L   F+
Sbjct: 641 SSNPNMQNLPIRDEEGKEIRKCVI-PQKKGWKIVSADYSQIELRILAHLSQDKQLLDAFK 699

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N  D+H + A+ ++G+   +VS + RR  K INFSIIYGIS + LA++LRIP + A + I
Sbjct: 700 NDKDVHSLTASNLYGIKESEVSEEQRRIGKMINFSIIYGISSYGLASRLRIPTNVAEEMI 759

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI---NERAAIN 889
             YF  FP +  +I  T +  ++  +V T+FGR+    EI   K+  RN+    ER AIN
Sbjct: 760 SNYFKAFPEVRAFIRDTISEAKEKCFVRTMFGRK---REIPQFKTKNRNVIQEGERIAIN 816

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AADI + AMI ++  L++ ++ +  +LQ+HDE+V+E PE+EI    +I+   M 
Sbjct: 817 TPIQGTAADIMKMAMIKIYNLLKEKEMESFAILQVHDEMVYEAPEKEIEKLKEILKEGMS 876

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
           +     + L VPL + I V + W
Sbjct: 877 EV----VELSVPLDIEISVGDYW 895


>gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 772

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 295/820 (35%), Positives = 458/820 (55%), Gaps = 67/820 (8%)

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           + V+ K+G+PPE ++   AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I 
Sbjct: 7   DEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIA 66

Query: 226 ------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
                  K     + +  + A LS KL  ++TDV + +  E L ++      L+   K  
Sbjct: 67  GLTFRGAKTMAGKLAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKY 126

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
           EF +    V       A   +P      T     + I+               S S+  +
Sbjct: 127 EFKRWTADVEAGKWLQAKGAKPAAKPQET-----VVID--------------ESPSEPAA 167

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
            ++ E                      +Y  I++   ++ W++KL+     +F   TD++
Sbjct: 168 ALSYE----------------------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSL 205

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D   +  + ++ + ++        V   ++D     S+         +  L  LK   E+
Sbjct: 206 DNIAANLVGLSFA-IEPGVAAYVPVAHDYLDAPDQISR---------QRALELLKPLLED 255

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY--- 515
           E   K+G N+KYD+ VL  YGI +RG   D ML SY+L+S    HD+ S++ +WL +   
Sbjct: 256 EKVRKVGQNLKYDRGVLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTI 315

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDK 574
           T ++I    K+ +  ++I+  +   +A E+++V LQL L + P+L   K  L+V+E ++ 
Sbjct: 316 TFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEM 375

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P++ V+S++E  G++ID  +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF
Sbjct: 376 PLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILF 435

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            K       KT  G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN 
Sbjct: 436 EKQGIKPLKKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINP 494

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIE
Sbjct: 495 KTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIE 554

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+AH+++   L   F    DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S 
Sbjct: 555 LRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSA 614

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F L+ QL IPR EA  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S
Sbjct: 615 FGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKS 674

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
             ++ R   ERAAINAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV +
Sbjct: 675 SNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 734

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +++   ++ I H + + C     + VPL V +    NW +
Sbjct: 735 DDLDAVAKRI-HQLMENC---TRIDVPLLVEVGSGENWDQ 770


>gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 972

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 325/1018 (31%), Positives = 523/1018 (51%), Gaps = 97/1018 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           E  L L+D  +  +R FYA    PL++ K  G  V+ + G+   + ++L   +     +H
Sbjct: 3   EKTLLLLDSFALAFRMFYAYSQNPLVNSK--GEDVSMMHGYWGAVLRILAKHK----PTH 56

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           FA+  D     TFR+E+YPDYKANR  +PE +  Q+PL+  + +A GIP +   G+EADD
Sbjct: 57  FAIARDVAHTKTFRHELYPDYKANRGPMPEEMAAQMPLLCESMEASGIPLLSEPGYEADD 116

Query: 120 IIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVK-EEKIDI--EHVIKKWGIP 175
           ++A+    A   GF  V IIS DKD+ Q+V+    L+   K  + ID   + V++K+GIP
Sbjct: 117 VMASAAEAAVNAGFDHVVIISKDKDMSQIVTDKIHLFHLEKGADGIDFGPQQVLEKYGIP 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PEK+    AL GDS DN+PG+P +G KTA  LL EYG+++NI  N   IK+K   +N+  
Sbjct: 177 PEKIRDYLALMGDSSDNVPGVPKVGPKTAIQLLTEYGDMDNIYANLDNIKKKGLHDNLAN 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LSR+LV L+T       L+ L     +   L    +  E   LI  +       
Sbjct: 237 NKEQAFLSRELVTLQTKRAYHGNLDALEFCGLHSDTLEGIFREHEINSLIRLLE------ 290

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                      N     G   +   D D +   S+ +  SD  S  +S     K      
Sbjct: 291 -----------NVPSKTGFVRKD--DSDDSAAGSESNGTSDDASGDSSNSKVVK------ 331

Query: 356 QKLSQYPIN-NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST- 413
              + +P +   +Y  + N +  +Q  ++ +          TD +D      + + ++  
Sbjct: 332 ---ASFPADLPPTYICVDNDEVFEQMKKEFDEATEIGIDTETDGLDPMQCNIVGLCLAAA 388

Query: 414 -------------LDQKDDTSF-------------KVETIFIDLSVHTSQDSTGKNTLTK 447
                        L   DD  F               +  FID       DS    TL  
Sbjct: 389 AKDGSVPKGYYIPLGHTDDIGFPYPAGKGGNFDFNATKKWFIDFW----NDSC---TLPG 441

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE-----DIMLMSYVLDSGRS 501
           +I     K  ++     + HN K+D  VL R +G++ +  +     D ++ +++L  G++
Sbjct: 442 DISDSGSKQPDSAKRSLVFHNAKFDLHVLARTFGLTQKQIDSANIIDTLIAAWMLSPGQT 501

Query: 502 SHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
              + +   + L +     + ++   K  I  ++       E+  E++   L+LW  LR 
Sbjct: 502 GLGLDNQVMQLLQHEMIPIENLIGRGKKQITFNRTPIKDATEYGAEDAVYTLRLWAPLRA 561

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           KL        +   + P++ V+ QME  G  +D  +LK++  ++   +  LE+ I D++G
Sbjct: 562 KLQKYDYEKYFFSQEMPLLKVLYQMEGVGAFVDTKILKKLQTDLEHRIEKLEKEICDMAG 621

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQL 677
            +FN+ SPKQLG++LF  L  P   K  T      A  LE+++    +PI+  ++E+R+L
Sbjct: 622 CEFNIGSPKQLGEVLFDTLGLPEIKKRST-----DAAVLEELSFRSAHPIVFAVIEYREL 676

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            K++STY   LP  +N  T+R+HT +    T TGRL+S +PNLQNIP+++DLG++IR AF
Sbjct: 677 KKMQSTYVSVLPTLVNPDTKRIHTSFIQWGTATGRLSSRDPNLQNIPVRSDLGKQIRAAF 736

Query: 738 ISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           +   P   +++ DYSQIELR+LAH++    L + ++  +DIH   AA I  V++E V+  
Sbjct: 737 VPQNPNNVILAVDYSQIELRMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTAD 796

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MRR AK +NF ++YG++ FRL+  L+IP ++A  +I  YF  + G+ ++I+ TK    ++
Sbjct: 797 MRRDAKVVNFGVLYGMTAFRLSRDLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKAAAHRD 856

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYVET+ GRR +   I+S       + ER A+N P+QGSAAD+ + AMI + K + D  L
Sbjct: 857 GYVETLSGRRRYIAGIDSSDRMESQMAERMAVNTPVQGSAADLIKIAMIRIQKRINDENL 916

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +M+LQ+HDELVFE P++++   S ++   ME A    + L+VPL  ++    NW E
Sbjct: 917 PLRMMLQVHDELVFECPKDQVEALSAMVKSEMEGA----MELKVPLVASVGFGKNWLE 970


>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
 gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
          Length = 911

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 323/981 (32%), Positives = 517/981 (52%), Gaps = 94/981 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+DG S IYR+++A   + R     DG  V+A+ GF   L+ +L   R  ++A    V
Sbjct: 10  LYLLDGYSIIYRSYFA--FMGRHLSAPDGTNVSALFGFFRTLFSILDEYRPGALA----V 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + D    TFR+E+YP+YKANR K PE L  Q+P++       G+  +   G EADDIIAT
Sbjct: 64  VLDSRVPTFRHEMYPEYKANREKAPEELHAQVPMIEEILGVMGMTVLRKDGVEADDIIAT 123

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--EKIDIEHVIKKWGIPPEKMVC 181
                 K+     I++ DKDL+QL+     +    K   + I  + V  +WG+  +++V 
Sbjct: 124 MAERCRKKDRPCVIVTGDKDLLQLLGGEIRMLRPEKGGYQLIGRDDVFDQWGVEADQIVD 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ETA 240
             +LTGD  DN+PG+ GIG KTA+ LL ++G+L+ +  N +     +R +  LE + E A
Sbjct: 184 YLSLTGDQADNVPGVKGIGPKTASKLLTKFGDLDGVYANLNACSTGERAK--LEASREDA 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR L++L+ DV  ++P E         P  +  L         NR A           
Sbjct: 242 FLSRSLIILKKDV--SLPPE--------APTPVGDL---------NREAAV--------- 273

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P++L        G     E  +   I   Q S   ++ ++ +S   P +L          
Sbjct: 274 PLLL------RYGAKALAEQAKGAKISEKQLSRQREKRAEASS--VPDEL---------- 315

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +    Y +I + + + +W++K  + G+ +  I TD++DA  + P+  +++   ++   
Sbjct: 316 --LGEGRYEQIDDLEGLDRWIEKAISAGACALDIETDSLDAMLANPVGFSLAVSPKQ--- 370

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                      + +    + G+     + +   L +   +     IGHN KYD  VL R+
Sbjct: 371 -----------AAYLPLIAEGQRKFDDDAVRERLVRLTSSPSVRIIGHNFKYDYKVLRRW 419

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK----IS 534
           G+  +    D M+ +++LD+  +S+ +  +A   L Y  K I  S K  +P D     IS
Sbjct: 420 GVVTKNLAFDTMVAAWLLDTTANSYGMDPLAASLLGY--KTI--SFKDVVPKDGLFQDIS 475

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                 +A E++++  + + L R +L    L  ++  L+ P++ ++++ME  GI +  D 
Sbjct: 476 VETATRYAAEDADITFRFYELFRRQLKERGLEKLFFELEMPLVPILAEMECAGITLLSDR 535

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+    E+ K+L ++E++I+   G  FN++S KQL  +LF + K     KTKTG + T  
Sbjct: 536 LEAYGRELEKDLGTIEDDIWQACGHSFNINSTKQLQQVLFEERKLTPIKKTKTG-YSTDI 594

Query: 655 QDLEQINCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             LE++   D  P++  +L  R L+K+KSTY D+LP  +N  T R+HT      T TGRL
Sbjct: 595 SVLEELAREDVVPLL--VLRHRSLAKLKSTYVDALPKLVNPETGRIHTQLIQTGTATGRL 652

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR AF+       ISADYSQIEL +LAH+++   L Q F +
Sbjct: 653 SSKDPNLQNIPIRDEDGRRIRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQAFRS 712

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  A+ IF V+   VS + RR AKTINF ++YG+S FRL+ +L I RS A  +I 
Sbjct: 713 GGDVHRRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMSAFRLSRELGISRSRADSFIS 772

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+  I  ++ K      Q+G  +T+ GR      INS   + +   ER A+N PIQ
Sbjct: 773 AYFRRYFRIQSFMRKVVQETEQSGVSKTLLGRERSIPAINSRNKTEKAGAERIAVNTPIQ 832

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM++V + +   +L +KM+LQIHDEL+FEVP +E      ++   ME A  
Sbjct: 833 GTAADIVKLAMLAVSRRMASEELKSKMVLQIHDELLFEVPFDEADRMEGLLKEEMESA-- 890

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             + L VPL+V+I+   +W +
Sbjct: 891 --VKLSVPLRVSIERGGSWGD 909


>gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222]
 gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222]
          Length = 940

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/624 (40%), Positives = 374/624 (59%), Gaps = 21/624 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+   Y  I +   + +W+ ++   G  +    T  +D   ++ + +++ T   +     
Sbjct: 328 IDRSLYITIRDEAVLAEWLAEIAEKGVVAIDTETTGLDEMQAELVGVSLCTGPGR----- 382

Query: 423 KVETIFIDLS-VHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLV 475
                ++ L  V  + D  G     +        L+ LK   E+   LKIG NIKYD  V
Sbjct: 383 ---AAYLPLGHVDGAADLFGSGARVEGQMDLDRALAMLKPVLEDPSVLKIGQNIKYDWKV 439

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
           L R+GI M   +D ML+SY  ++G  +H +  +A  +L +     K+++ S KS I   +
Sbjct: 440 LARHGIRMVPLDDTMLLSYAQNAGAHNHGMDELADLYLGHRCLPIKDLIGSGKSQINFSQ 499

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  +  E+A E++ V  +LW  LRPKL    +   YERL++PMI V++ ME+ GI+ID 
Sbjct: 500 VAIDKASEYAAEDAEVTWRLWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDS 559

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + LK++S   ++ +  LE  I++L+G  FN+ SPKQLG+ILF ++    G + KTG + T
Sbjct: 560 EHLKRMSNAFAQKMAGLEAEIHELAGGPFNVGSPKQLGEILFERMGLAGGKQGKTGAFST 619

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ LE +    + +   +L+WR +SK+KSTY D+LP H+N  T RVHT YS+A   TGR
Sbjct: 620 GAEVLEDLAAEGHELPARVLDWRAISKLKSTYTDALPLHVNPETGRVHTSYSIAGAQTGR 679

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIP++TD G++IR AF++ P  +L+S DYSQIELRILAH+A+I  L Q F 
Sbjct: 680 LASTDPNLQNIPVRTDEGRRIREAFVAAPGMRLVSLDYSQIELRILAHVAQIPALQQAFR 739

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + +DIH M A+++FGV +E + P +RR AK INF +IYGIS F LA  LRIPR+EA  +I
Sbjct: 740 DGIDIHAMTASQMFGVPVEGMDPMIRRRAKAINFGVIYGISGFGLARNLRIPRAEAQAFI 799

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RFP I  Y+++T    +Q+G+V T+FGRRI    IN           RAAINAPI
Sbjct: 800 DTYFERFPEIRAYMDRTVAGAKQDGFVRTLFGRRIMTPGINQ-SGPAAGGARRAAINAPI 858

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI RRAMI + +++    L  +MLLQ+HDELVFEV E  +    ++    M+ A 
Sbjct: 859 QGAAADIIRRAMIRMPQAIA--HLPARMLLQVHDELVFEVEEAAVPELVEVARGVMQGAA 916

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
            P + L VPL V+     NW E +
Sbjct: 917 DPAVRLDVPLIVDAGQGANWAEAH 940



 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/293 (50%), Positives = 204/293 (69%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+R+ DGLP+ A+AGFCNM+WK LQ+ +     +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRRSDGLPIGAVAGFCNMVWKYLQDGKGSDQPTHAA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ A TFRN+IYP YKANRP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 67  VIFDHSARTFRNDIYPLYKANRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +    A   G  VTIIS+DKDLMQLV     + D +K + I  + V +K+G+ PE++V +
Sbjct: 127 SLACQARDAGGRVTIISSDKDLMQLVGGGVEMMDPIKAKPIGPDEVREKFGVGPERVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDSIDN+PG PGIG KTAA L++EYG+LE++L  A+ IKQ KRR+ ++++AE  R+
Sbjct: 187 QALAGDSIDNVPGAPGIGIKTAAQLIEEYGDLESLLARAAEIKQPKRRQTLIDHAEQIRI 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           S++LV L   + +   LE L + + +   L+ FL  +E   L  RVA  +  +
Sbjct: 247 SKRLVELDCGMVLDFTLESLEIREPDPEALLEFLTRMELRTLTKRVAERFGTE 299


>gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 832

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 309/905 (34%), Positives = 478/905 (52%), Gaps = 103/905 (11%)

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
           L+    +  G P + ++G EADD+I T    +      V I + DKD+ QLV     L +
Sbjct: 2   LLHACVKGMGYPFLCVEGVEADDVIGTLARSSAAADRPVVISTGDKDMAQLVDGHITLVN 61

Query: 157 TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE------ 210
           T+    +D+  V +K+G+ PE ++   AL GD +DNIPG+PG+G KTA  LL        
Sbjct: 62  TMTGSVMDVAGVKEKFGVGPEHIIDYLALMGDKVDNIPGVPGVGEKTAVGLLVGIGGGIK 121

Query: 211 --YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
             Y NL+ +     R   K     + E+ E A LS +L  ++ D    +PL+        
Sbjct: 122 ELYENLDKVASLPIR-GAKTLAAKLEEHREMAFLSYELATIKID----VPLD-------- 168

Query: 269 GPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKT 328
                     +E  +L         C                        E DRDT ++ 
Sbjct: 169 ----------IELDQL--------HC-----------------------GEPDRDTLMEL 187

Query: 329 S---QFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
               +F S  +   + ++++  Q+L +E             +Y  I+       W++KL+
Sbjct: 188 YAELEFKSWIEDLQR-DAKRAGQELTVEE----PTVEAREAAYEVILQQGQFDAWLKKLQ 242

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET---IFIDLSVHTSQDSTGK 442
                +F   ++  DA  ++ + +           SF ++T    +I L+   S     +
Sbjct: 243 AAPLFAFVTQSNGTDAQRAQLVGL-----------SFAIQTHEAAYIPLT--HSYMGVPQ 289

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--------HRYGISMRGFE-DIMLMS 493
                 +L  LK   E+    K+G + K+   +L           GI ++G   D +L S
Sbjct: 290 QLDRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILES 349

Query: 494 YVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           YVLDS  + HD  S+  K+L++T    +EI       +  D+I+  Q   +A E +++ L
Sbjct: 350 YVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTL 409

Query: 551 QLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           +L  +   +L  +  L  V   ++ P++ V++++E  G  +D +LL   S E+   + +L
Sbjct: 410 RLHEVFDARLAAIPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTAL 469

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
           E   + ++GE+FNL SPKQLG IL+ KL  P  +KT TGQ  T    L ++   D P+ K
Sbjct: 470 EREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPK 529

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            ++++R +SK+KSTY D LP  IN RT R+HT Y  A  +TGRL+S +PNLQNIPI+T  
Sbjct: 530 VLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAE 589

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           G++IR+AF++P   KL++ADYSQIELRI+AH+A+   L   F N LD+HR  AAE+FGV 
Sbjct: 590 GRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVE 649

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +E V+  MRR AK INF +IYG+S F LA Q+ + R ++  Y+ RYF R+PG+  Y+E+T
Sbjct: 650 LENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERT 709

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           +    + G+VETIFGRR++  +IN+   S+R   ER AINAP+QG+AADI ++AM++V+ 
Sbjct: 710 RAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNG 769

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            L++  L  +++LQ+HDELV EV E+ +   S+ I   M  A      L VPL V + V 
Sbjct: 770 WLDESGLDARVILQVHDELVLEVREDLVDQVSEQIRPHMSGAA----ELAVPLLVEVGVG 825

Query: 970 NNWQE 974
           NNW E
Sbjct: 826 NNWDE 830


>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
 gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
          Length = 972

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 328/1001 (32%), Positives = 522/1001 (52%), Gaps = 73/1001 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG +  YRAF+A      R   G P  A+ GF + +   ++  + E    + AV F
Sbjct: 8   LLLIDGHALAYRAFHALAEAGLRSSTGEPTYAVYGFTSAMLNAIEEYQPE----YAAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++Y +YKANR + P     QL  ++    AF IP    +G+EADD+I T  
Sbjct: 64  DV-GKTFRDDLYAEYKANRAETPAEFEQQLERIKQVLAAFDIPIYTAEGYEADDVIGTLA 122

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTC-------LYDTVKEEKIDIEHVIKKW-GIPPE 177
             A + G  V I++ D D +QLV            L       +  +  V +++ G+ P 
Sbjct: 123 RQATERGVDVLILTGDTDTLQLVDDHVTVLLNNPYLRGPKNTTRYGVAEVTERYKGLRPH 182

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-Y 236
           ++  L+ L GD  DNIPG+ GIG   A  LL ++G +EN+  +    +  KR +  LE  
Sbjct: 183 QLADLRGLKGDPSDNIPGVKGIGEAGAIALLNQFGTIENLYDHLD--EAPKRYQKHLEGQ 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCD 295
            + A  S+KL  +  D P+T+ L    L D +  R+I+  + LEF   L+ R+  +    
Sbjct: 241 RDIALFSKKLATIVCDAPVTLNLADATLADYDRSRVIAVFQELEFGASLVKRLPPSGSTT 300

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            A   P +               + D    ++   F+  +    + ++E  PQ+L L   
Sbjct: 301 VAQPLPSI--------------PQADASAPLQADMFAPEAPAVRESSAE--PQQLTLFGD 344

Query: 356 QKLSQYPINN---------DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
            ++   P+ +           Y       D++  V +L T    +F   T  M+      
Sbjct: 345 PEVVPPPVAHVEAPLRAAPGEYRAACTDADLEAVVAELATAPLVAFDTETRGMNPLRDDL 404

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKI 465
           + ++++T+  +          +I +  HT    TG+  L ++ +++ L+ FF +    K+
Sbjct: 405 VGLSLATVPGR--------AWYIPVG-HT----TGEMQLPRDRVIAALRSFFADPARPKV 451

Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA----SIAQKWLSYTRKEI 520
            HN K+D  VL R G+ + G   D ML + +LD  R+  D+A     +A+   +    ++
Sbjct: 452 AHNAKFDIEVLERAGMPVAGLSFDTMLAAGLLDKRRNLKDLAFYELELAEPLDAI--GDL 509

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDV 579
           +   K+ +   ++  ++   +A  ++++ L+L   L  KL     L  ++ RL+ P++ V
Sbjct: 510 IGKGKNQVTFAEVPIARATRYAAADADMTLRLQPALEAKLRAAGSLADMFYRLEMPLVPV 569

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLK 638
           + +ME +GI +D   ++ +   + + L  +E+ I+ ++G+ FN++S  QL ++LF  K+ 
Sbjct: 570 LVRMEQSGILLDVPYMRALGERMGRELAQIEQQIFAIAGKPFNINSGDQLSEVLFGPKIN 629

Query: 639 FPSGA--KTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKR 695
            P+    +T+TG++  TAQ LE++   D   II+ IL  R+LSK+KSTY D LP  +N  
Sbjct: 630 LPTTGLERTRTGRYSLTAQALEELQASDTTGIIELILRHRRLSKLKSTYVDELPALVNPE 689

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT Y+     TGRL+S  PNLQNIP +T+ G+++RR FI+ P   LI+ADYSQIEL
Sbjct: 690 TGRVHTDYNQLGAATGRLSSNSPNLQNIPTRTEEGREVRRGFIAAPGHVLIAADYSQIEL 749

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LAHI     L Q F    DIH   AA +FGV    V    RR AKT+ F +IYGISPF
Sbjct: 750 RVLAHITGDPNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIYGISPF 809

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA +L I R +A + I   F++FP I +YI++T    R  GYV+++FGRR    ++ + 
Sbjct: 810 GLAQRLGISREQARNLIDSLFNQFPRIRDYIDRTLETGRNEGYVQSLFGRRRPMFDLRT- 868

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
               R   ER AIN PIQ +AADI + AMI+V   L   +L T+MLLQ+HDEL+FE PE 
Sbjct: 869 SGPRRQAAEREAINHPIQSTAADIMKLAMIAVDAELRRRRLRTRMLLQVHDELIFEAPEA 928

Query: 936 EITTASQIIVHSMEKACLPKIN--LRVPLKVNIKVSNNWQE 974
           E+     ++   ME   L  ++    VPL+V I+  +NW+E
Sbjct: 929 EVDEVVALVRERME-GVLSDMHPPFAVPLRVEIEKGSNWEE 968


>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803]
 gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I
 gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803]
          Length = 986

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 350/1023 (34%), Positives = 528/1023 (51%), Gaps = 103/1023 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +RA+YA  L      R   G+P +   GF N L +++++ +  +IA    
Sbjct: 10  LLLVDGHSLAFRAYYAFGLSKKGPLRTTAGIPTSVCFGFLNSLMQVMESQKPAAIA---- 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E    YK+NR + PE     L  ++   +A  +  I   G+EADDI+ 
Sbjct: 66  IAFDRREPTFRHEADGAYKSNRQETPEDFAEDLSYLQQLLEALNLQTITYAGYEADDILG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLYDT-------VKEEKIDIEHVIKKW 172
           T        G+ V I+S D+DL QLVSP    + LY T          +++D + V+ K 
Sbjct: 126 TLACQGSDAGYQVKILSGDRDLFQLVSPEKNISVLYLTRNPFSSNTGYDELDWQGVVDKM 185

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRR 230
           G+ P ++V  +AL GD  D IPGI GIG KTA  LL EY  LE +  N ++IK   K R 
Sbjct: 186 GVTPAQIVDFKALCGDKSDCIPGINGIGEKTAIKLLAEYETLEKVYENLAQIKGALKTRL 245

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +N     + A  S+ L  +  DVP+ +  E L L   +  RL+  L+ LE    I+++  
Sbjct: 246 DN---GKDDAMHSQMLARIVVDVPLPVTWEDLQLTGFSTDRLVPLLEKLELRTFIDKIQA 302

Query: 291 TYDCDAANIEPVVL--DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
            +   + N  PV +  + +  E K      +         SQ  SL D    +N E    
Sbjct: 303 FHRNFSDNQSPVPMGNEADNGEPKKTVKAKKSKEKVNPDDSQQLSLFDGVPVVNQED--- 359

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII----TDTMDAFHS 404
            L   +L K  Q  I       I     ++  V++L+    A F +     TD++D   +
Sbjct: 360 GLITIQLPKQIQPQI-------ITTIAQLEALVEELKKHTDADFPVAWDTETDSLDPLVA 412

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
             + I  +   + +  ++      I L  H      G+      I   L +   N  + K
Sbjct: 413 NLVGIGCAWGQEPNQVAY------IPLKHHQ-----GEQLSLGIIKDLLGEILGNAIYPK 461

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW------LSYTR 517
           +  N K+D+ VL  +GI + G   D ML SYVL     +H++  + +++      LSY  
Sbjct: 462 VLQNAKFDRRVLAHHGIELGGVVLDTMLASYVLQP-EETHNLTDLCRRYNLGLVALSYKD 520

Query: 518 KEILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHVYER 571
             + K +  + +P+         E A +   +      LL  KL  E     +L  + + 
Sbjct: 521 LGLKKDQTIADLPL---------ETAGQYCGLDCYATYLLASKLQKELDQYPELKEILKE 571

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +++P+  +++ ME  GI+ID D L+ +S ++++NLL++E   Y+ +GE FNLSSPKQLG 
Sbjct: 572 IEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTIETAAYEAAGESFNLSSPKQLGT 631

Query: 632 ILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           ILF KL        KTKTG + T    LE++  GD+PII  ILE R L+K+KSTY D+LP
Sbjct: 632 ILFDKLGLDRKKSRKTKTG-YSTDHATLEKLQ-GDHPIIDAILEHRTLAKLKSTYVDALP 689

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
             +N +TQR+HT ++ A T TGRL+S  PNLQNIPI++D  ++IRRAF+      L+SAD
Sbjct: 690 ELVNGQTQRIHTDFNQAVTSTGRLSSSNPNLQNIPIRSDFSRQIRRAFLPQKDWLLVSAD 749

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELRILAH+++   L Q + +  D+H + A  +FG   E ++P  R   KTINF +I
Sbjct: 750 YSQIELRILAHLSQEPVLLQAYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTINFGVI 807

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+   R A +  I   E  ++I RY   +  + +Y+E  K      GYV TI GRR ++
Sbjct: 808 YGMGAQRFARETGISAVEGREFIDRYHRTYAQVFDYLETMKLEAIAKGYVTTIVGRRRYF 867

Query: 870 DEINSPKSSIR--------------NINE----RAAINAPIQGSAADITRRAMISVHKSL 911
           + +      +R              N N+    R+A NAPIQGS+ADI + AM+ + K L
Sbjct: 868 NFVTEALRQLRGKTVTELDLVDVKMNYNDAQLLRSAANAPIQGSSADIIKIAMVKLAKLL 927

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           E ++  T+MLLQ+HDEL+FE+P EE    + +I ++ME+A    + L VPL V +   +N
Sbjct: 928 ESYQ--TRMLLQVHDELIFEMPPEEWEELAPLIQNTMEQA----LTLSVPLVVEMHRGSN 981

Query: 972 WQE 974
           W E
Sbjct: 982 WME 984


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 327/989 (33%), Positives = 515/989 (52%), Gaps = 141/989 (14%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI-F 65
           L ++DG S ++RAFYA P L+   +G+  NA+ GF NML K+     KE I   + V  F
Sbjct: 6   LLILDGHSLMHRAFYALPDLTN-LEGVHTNAVYGFLNMLLKM-----KEEIKPDYVVCTF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y +YKA R K+P  L  Q P+++   +   +   EI GFEADD++ T +
Sbjct: 60  DRSAPTFRHNKYSEYKAGRKKMPPELSEQFPVIKEILKMMSVSIFEIDGFEADDLMGTLS 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVC 181
             AEK G  V I++ D+D +QL +    +  T K    +E  D   +I+++G+ P + + 
Sbjct: 120 VFAEKNGIQVYIVTGDRDALQLATDKVKIVITKKGITQKEIYDRNRMIEEYGVTPTQFID 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD+ DNIPG+PG+G KTA  L                IKQ K  EN+ E      
Sbjct: 180 VKGLMGDTSDNIPGVPGVGEKTAFKL----------------IKQYKSIENVYEN----- 218

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK-ALEFTKLINRVATTYDCDAANIE 300
                                 +ED +G +L   LK  +E      ++AT       N+ 
Sbjct: 219 ----------------------VEDISGKKLKENLKDNMEQAIFSKKLATI----MTNV- 251

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV +D+ + E+K      E D     K  +        SKI+     QK       K  +
Sbjct: 252 PVEMDLESIESK-----EEYDAQGLKKVFEKLEFKSLISKIHGLNEIQK------DKAQE 300

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           + +    +T+I        +V  L+                 ++  + I     D++  +
Sbjct: 301 FDV---EFTEIDTLHKFSDFVNSLK-----------------NNDLVYINFKVEDEESYS 340

Query: 421 SFKVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
              ++ +FI L+    Q    +  N    + +   K  FENE   K+G+++K    +L++
Sbjct: 341 RNYIDKVFISLNEKNFQIHINEIYNEDKNKAVELFKLLFENEGISKVGYDVKVPCSILYK 400

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS----------YTRKEILKSRKSS 527
            GI     E DI + +Y++DS RS +++  I +++            ++++ +L S+  S
Sbjct: 401 MGIRFLKLEFDIKIAAYLIDSSRSDYELKDIIRQYTGVEISEDDEKFFSKETVLFSKVYS 460

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
               KI ++ ++E                        LL+   ++++P+I V++ ME  G
Sbjct: 461 ELTKKIEEAHMEE------------------------LLY---KVEQPLIYVLASMECEG 493

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            ++D+D L +   +    +  +++ IY LS E+FN++SPKQLG ILF KL  P   KTKT
Sbjct: 494 FKVDKDKLVEQEGKFKIEIDKVQKEIYSLSEEEFNINSPKQLGKILFEKLDLPVIKKTKT 553

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T A+ LE++    +PI++ I+ +RQL+K+ STY + L   I +   ++H+ ++   
Sbjct: 554 G-YSTNAEVLEKLK-DKHPIVEKIIYYRQLTKLYSTYIEGLKAVI-QEDDKIHSSFNQTV 610

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKIT 765
           T TGRL+S EPNLQNIPIK ++G++IR+ F+ P  +   ++SADYSQIELR+LAHIA   
Sbjct: 611 TTTGRLSSTEPNLQNIPIKYEMGKEIRKIFV-PENEDCVILSADYSQIELRVLAHIADDE 669

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N  DIH   A+E+F V I++V+   R +AK +NF I+YGI  F LA  L+I R
Sbjct: 670 NLISAFINHSDIHTKTASEVFKVPIDEVTSAQRSNAKAVNFGIVYGIGDFSLAKNLKISR 729

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  YF R+P +  Y++      + N YV T+  RR    EI S    +R+  ER
Sbjct: 730 KEAKLYIDTYFERYPKVKLYMDDIVKEAKVNSYVTTLMNRRRFIPEIKSSNKIVRSFGER 789

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N PIQGSAADI + AM++V++ LE++KL +K++LQ+HDEL+  V +EEI     ++ 
Sbjct: 790 LAMNTPIQGSAADIIKIAMVNVYRRLEENKLKSKLILQVHDELILNVYKEEIDNVKSVVK 849

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             MEK     + L+VPL+V+I V +NW E
Sbjct: 850 EEMEKV----LQLKVPLEVDISVGSNWYE 874


>gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L]
 gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L]
          Length = 996

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 341/1016 (33%), Positives = 527/1016 (51%), Gaps = 94/1016 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L+DG S  +R+++A         R   G+P +   GF   L +++++    +IA    
Sbjct: 25  LILIDGHSLAFRSYFAFAKSRQGGLRTKTGIPTSVCFGFIKSLLEVMESENPNAIA---- 80

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR +    YKANR + PE  LP +  ++   Q   IP I   G+EADD++A
Sbjct: 81  IAFDTKEATFRQQADATYKANRTETPEDFLPDVKNLQQLLQGLRIPVITSPGYEADDVLA 140

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---------DTVKEEKIDIEHVIK 170
           T  + A  +G+ V ++S D+DL QLV+P    T LY          TV   +  +E V  
Sbjct: 141 TLAHQAIDQGYRVKVVSGDRDLFQLVAPDKGITVLYLSGPFSRGSATVGPTEYGLEEVEA 200

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K G+ P ++V  +AL GD  DNIPG+ GIG KTA  LL+EY NL+NI  +   IK   ++
Sbjct: 201 KLGVLPSQVVDYKALCGDPSDNIPGVKGIGAKTAVKLLKEYQNLDNIYASLDTIKGAVKK 260

Query: 231 ENILEYAET-ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +  LE  ++ A  +R L  LR D PI I L+   L+  +   L   L+ LE    I+++ 
Sbjct: 261 K--LEVGKSDAEHARYLAQLRFDTPIDIDLDQCQLQGFDPQVLKPLLERLELKSFISQI- 317

Query: 290 TTYDCDAANIEPVVL-DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
              D        VVL DI T+       +T  + D+   T +     D  S  +  +T  
Sbjct: 318 ---DKLQQRFGGVVLEDIETSAPNDTVSDTVSNTDSDTDTQE----DDDISFFSVAET-- 368

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
               E  Q+  Q         +I++T D + Q V++L+    A   +  DT         
Sbjct: 369 ----EEFQE--QGSNTGSIQPQIIDTVDKLNQLVEQLKYYTDAGNPVAWDT--------- 413

Query: 408 AIAISTLDQKDDTSFKVETI----FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
               S L+ +D     +       F D++        G N     +L  L+   E+  + 
Sbjct: 414 --ETSDLEPRDAQLVGIGCCWGKEFTDVAYIPIGHKDGTNLDKDIVLESLRPILESSDYP 471

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+  N K+D+LVL   GI + G   D ML SYVL+   +SH ++ +   +L    +    
Sbjct: 472 KVLQNSKFDRLVLRCNGIQLAGVVFDTMLASYVLNP-ETSHKLSDLGLHYLGIEAQSYND 530

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVS 581
                  I  +    V ++   ++     +   LR +L  +  L  +   +++P+  V++
Sbjct: 531 LVPKGKTIRDLDIPTVADYCGMDAYTTFGIVFKLREELEQIPALQQLLLEVEQPLEPVLA 590

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP- 640
           +ME  GI+ID+D L+Q S E+ K+L+++++  Y  +GE+FNL SPKQL  +LF KL    
Sbjct: 591 EMEYQGIRIDKDYLQQFSQELEKDLVAIKQQAYQDAGEEFNLGSPKQLSQLLFEKLGLDR 650

Query: 641 -SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTG + T A  L ++  GD+P++  I+E+R LSK+KSTY D+LP  +   T+RV
Sbjct: 651 RKSRKTKTG-YSTDATILAKLQ-GDHPVVDAIVEYRSLSKLKSTYVDALPALMRSDTKRV 708

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S  PNLQNIPI+TD  ++IR+ FI      L+SADYSQIELRILA
Sbjct: 709 HTDFNQTVTTTGRLSSSSPNLQNIPIRTDFSRQIRKGFIPESGWLLVSADYSQIELRILA 768

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + ++   D+H + A  +F  + E ++ + RR  K INF +IYG+   R A 
Sbjct: 769 HLSQEPVLVEAYQTQADVHTLTAQMLF--DKEDITAEERRLGKIINFGVIYGMGAQRFAR 826

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY---------- 869
           + ++  +E  ++I R   R+P +  Y+E+TK      GYVETI GRR ++          
Sbjct: 827 EAKVSTAEGKEFIDRLNQRYPLVFAYLEETKKKAIAQGYVETILGRRRYFSFGGNSLRRL 886

Query: 870 -----DEINSPKSSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
                D+I+  K  +++IN       RAA N+PIQGS+ADI + AMI +++ L+ +K   
Sbjct: 887 QGKPLDQIDLDK--LKSINPYDAGSLRAAANSPIQGSSADIIKIAMIKLYQELQKYK--A 942

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++LLQ+HDEL+FE+P +E       I  +ME A    + L VPL V I   +NW E
Sbjct: 943 RLLLQVHDELIFEIPPDEWEELQLKIRETMESA----VELTVPLVVEIHAGDNWME 994


>gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05]
          Length = 970

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 341/1016 (33%), Positives = 529/1016 (52%), Gaps = 111/1016 (10%)

Query: 10  VDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +DG S  +RA+YA       PL  R   G+P +   GF N L ++++  + E IA    +
Sbjct: 13  IDGHSLAFRAYYAFAKARRGPL--RTSTGIPTSICFGFLNSLIQVIKLEKPEYIA----I 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E   +YKA+R + PE  +P +  ++   +A  I  I   G+EADDI+ T
Sbjct: 67  AFDSSEPTFRHEADVNYKADRKETPEDFIPDIQNLQRLLEALNITIITAPGYEADDILGT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE------KIDIEHVIKK 171
                 + G+ V I++ D+DL QLV+     + LY   + V+        +   + V +K
Sbjct: 127 VANRGTENGYRVKIVTGDRDLFQLVNDQNNLSVLYLERNAVRSSSGEGYTEFKFDDVTEK 186

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P +++  +AL GD  DNIPGI GIG KTA  LL EY  LE +  N   IK   +++
Sbjct: 187 MGIKPTQVIDYKALCGDKSDNIPGIRGIGDKTAVKLLNEYETLEEVYNNIEAIKGANKKK 246

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                 E    S+ L  + TD P+   +E+  L+  N   +   L+ LE  K +  +   
Sbjct: 247 LKEGKKEAEH-SQFLAKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQL 305

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +    NI              +    +IDR  T + S F S S Q   +N  +  +K  
Sbjct: 306 QEHFGGNIT-------------LEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEKKES 352

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT----MDAFHSKPI 407
           L + Q +++              + +++ V KL T  + +  +  DT    ++   ++ +
Sbjct: 353 LIKPQIITE-------------IEQLEELVNKLVTYTNGNIPVAWDTETTALNPREAELV 399

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            I     ++  D ++        + +   Q   GK    +++L  L+   E+ ++ K+  
Sbjct: 400 GIGCCWGNKPTDIAY--------IPIAHKQ---GKQLRKEQVLDRLQSILESNNYPKVFQ 448

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILK 522
           N K+D+L+    GI++ G   D ML SYVL   +S H ++ + +++L    S   K++  
Sbjct: 449 NTKFDRLIFKHQGINLDGVVLDTMLASYVLHPEKS-HKLSELCEQYLEGITSLDYKDLGI 507

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL----DKPMID 578
            +K +I     +D  ++  A          +LL+ P     K L   ++L    ++P+  
Sbjct: 508 GKKQTI-----ADLDIETVAEYCGMDAYATFLLVEPLKNELKTLSTLDKLLLEVEQPLEP 562

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V++ ME TGI ID + L ++S E+ ++LLSLEEN Y  +GEKFNL SPKQLG ILF KL+
Sbjct: 563 VLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQAAGEKFNLGSPKQLGHILFEKLE 622

Query: 639 F--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
                  KTKTG + T    LE++  GD+PII  ILE+R LSK+KSTY D+LP  ++K  
Sbjct: 623 LNRKKSRKTKTG-YSTDHATLEKLK-GDHPIIDYILEYRTLSKLKSTYIDALPELVDKID 680

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           QR+HT ++ + T TGRL+S  PNLQNIPI+T+  ++IR+AFI      L+SADYSQIELR
Sbjct: 681 QRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQQDWLLVSADYSQIELR 740

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH+++   L   ++N+ D+H + A  +F  + E+++PQ R   KTINF +IYG+   R
Sbjct: 741 ILAHLSQEQVLLNAYKNADDVHSVTARLLF--DKEEITPQERTLGKTINFGVIYGMGSQR 798

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            A +  +   E  ++I +Y  R+  + +Y+E  K     NGYV TI GRR +++  +   
Sbjct: 799 FAREAGVSAVEGKEFINKYRQRYAKVFDYLESMKKEAIANGYVTTILGRRRYFNFFDDNL 858

Query: 877 SSIR------------NINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
              R            NIN       RAA NAPIQGS+ADI + AM+ + + L++++   
Sbjct: 859 YRFRGHDPQNIDLNKININYNDSQLLRAAANAPIQGSSADIIKIAMVKIQEILDNYQ--A 916

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +LLQ+HDELVFE+P +E       I  +ME A    + L VPL V I    NW E
Sbjct: 917 NLLLQVHDELVFEIPHQEWEELEDKIKETMENA----VTLTVPLVVEINTGKNWME 968


>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 900

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 316/979 (32%), Positives = 504/979 (51%), Gaps = 104/979 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA++A   LS    G P +A  G   ML KL+ + RK +   +  V  D
Sbjct: 17  LYLVDLSGYVFRAYHAISPLS-SPSGEPTHATYGTVAMLTKLV-DERKPA---YLGVAMD 71

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+E+ P YKA+RP  P  L  Q+   R   +A+ IP    +G EADD++A    
Sbjct: 72  SPGKTFRDELDPRYKAHRPPPPPDLGVQMSRCREIVEAYRIPIFIQEGLEADDLVAVAVA 131

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            A++ G  V I S+DKDLMQLV      L+D ++++      V+ K+G+PPE++  L AL
Sbjct: 132 RAKERGLRVVIASSDKDLMQLVDGEQVMLWDAMRDKVYGHPEVVAKFGVPPEQVRDLLAL 191

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD+ DN+PG+PG+G KTAA LL ++G+L  I     RI + K+                
Sbjct: 192 VGDTSDNVPGVPGVGLKTAAELLAQFGSLSAIY---ERIGEVKK---------------- 232

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
                                   PR+   L+  E    +++   T D  A    PV LD
Sbjct: 233 ------------------------PRIRESLQQNEADARLSQKLVTLDGGA----PVSLD 264

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP--- 362
           + T    G         DT      F+ L                   R  K  + P   
Sbjct: 265 LETLRYGGA--------DTGRLRELFTELG----------------FSRFLKAVRAPEPT 300

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
               +Y  +   ++++ + +     G  +  ++  + +   +    +A++          
Sbjct: 301 ARAATYRVLTTREELEGFARSARAAGRLALDVLATSREPMSAHVCGVALACEPG------ 354

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
             + +++ L  H    +  + +++ +I + +     +    K+GH++K+ +++L R+ I 
Sbjct: 355 --QAVYVPLG-HRYLGAPAQLSMS-DIDAVMGPLLADPELPKVGHDVKFCEVILLRHRIG 410

Query: 483 MRGFE-DIMLMSYVLD-SGRSS-HDIASIAQKWLSYTRKEILKSRKSSI--PIDKISDSQ 537
           + G   D ML SY+LD  G++  H++A         T  E+   R+      +D+I   +
Sbjct: 411 LVGVSFDTMLASYLLDPEGKNQLHELAERELGAKMQTLDEVAPKRRGQAQRALDEIELGE 470

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +    ++V L L   LRP+L  EKL  +  +++ P+  V+++ME+TG+ +D   L Q
Sbjct: 471 ASSYGAAFADVALSLTDRLRPRLRAEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQ 530

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + A+++  L +LE+   ++ G   NL+SPKQL  +LF +LK  S  KTKTG  ++T  D+
Sbjct: 531 LGAQMTTELAALEQKAREIVGHDINLASPKQLEAVLFDELKLRSQRKTKTG--RSTDADV 588

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +    ++P    +LE R ++K+K TY D+LP  ++  T R+HT +  A   TGRL+S +
Sbjct: 589 LEALSEEHPFPGVVLEHRAIAKLKGTYVDALPRLVHPGTGRIHTRWGQAVAATGRLSSQD 648

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+LG+ IRRAF++PP   ++SADYSQIELR+LAH++K   L   F    D+
Sbjct: 649 PNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDV 708

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A EIFGV+   V+ +MRR +KTINF +IYG+    LA +L I R+EAA +I  YF 
Sbjct: 709 HVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESALAKRLDISRAEAARFIDAYFA 768

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+ G+HE++E T    +++  V T+ GRR    ++ S     R   ER A N PIQG+AA
Sbjct: 769 RYRGVHEFMEGTMAEAKRSESVRTLLGRRRLLPDLRSSDRMRRAQAERIAQNTPIQGTAA 828

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + AM+ V + +       +M+L +HDEL FEVP E +  A   +  +ME        
Sbjct: 829 DLLKLAMVRVPRPVVP---GARMVLTVHDELAFEVPAEAVDEAKAKVREAMESV----FP 881

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V++     W + +
Sbjct: 882 LDVPLVVDVGHGPTWADAH 900


>gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
 gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
          Length = 970

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 339/1016 (33%), Positives = 528/1016 (51%), Gaps = 111/1016 (10%)

Query: 10  VDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +DG S  +RA+YA       PL  R   G+P +   GF N L ++++  + E IA    +
Sbjct: 13  IDGHSLAFRAYYAFAKARRGPL--RTSTGIPTSICFGFLNSLIQVIKLEKPEYIA----I 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E   +YKA+R + PE  +P +  ++   +A  I  I   G+EADDI+ T
Sbjct: 67  AFDSSEPTFRHEADVNYKADRKETPEDFIPDIQNLQRLLEALNITIITAPGYEADDILGT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE------KIDIEHVIKK 171
                 + G+ V I++ D+DL QLV+     + LY   + V+        +   + V +K
Sbjct: 127 VANRGTENGYRVKIVTGDRDLFQLVNDQNNLSVLYLERNAVRSSSGEGYTEFKFDDVTEK 186

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P +++  +AL GD  DNIPGI GIG KTA  LL EY  L+ +  N   IK   +++
Sbjct: 187 MGIKPTQVIDYKALCGDKSDNIPGIRGIGDKTAVKLLNEYETLDEVYNNIEAIKGANKKK 246

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                 E    S+ L  + TD P+   +E+  L+  N   +   L+ LE  K +  +   
Sbjct: 247 LKEGKKEAEH-SQFLAKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQL 305

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +    NI              +    +IDR  T + S F S S Q   +N  +  +K  
Sbjct: 306 QEHFGGNIT-------------LEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEKKES 352

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT----MDAFHSKPI 407
           L + Q +++              + +++ V KL T  + +  +  DT    ++   ++ +
Sbjct: 353 LIKPQIITE-------------IEQLEELVNKLVTYTNGNIPVAWDTETTALNPREAELV 399

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            I     ++  D ++        + +   Q   GK    +++   L+   E+ ++ K+  
Sbjct: 400 GIGCCWGNKPTDIAY--------IPIAHKQ---GKQLRKEQVFDRLQSILESNNYPKVFQ 448

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILK 522
           N K+D+L+    GI++ G   D ML SYVL   +S H ++ + +++L    S   K++  
Sbjct: 449 NTKFDRLIFKHQGINLDGVVLDTMLASYVLHPEKS-HKLSELCEQYLEGITSLDYKDLGI 507

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL----DKPMID 578
            +K +I     +D  ++  A          +LL+ P     K L   ++L    ++P+  
Sbjct: 508 GKKQTI-----ADLDIETVAEYCGMDAYATFLLVEPLKNELKPLSTLDKLLLEVEQPLEP 562

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V++ ME TGI ID + L ++S E+ ++LLSLEEN Y  +GEKFNL SPKQLG ILF KL+
Sbjct: 563 VLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQAAGEKFNLGSPKQLGHILFEKLE 622

Query: 639 F--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
                  KTKTG + T    LE++  GD+PII  ILE+R LSK+KSTY D+LP  ++K  
Sbjct: 623 LNRKKSRKTKTG-YSTDHATLEKLK-GDHPIIDYILEYRTLSKLKSTYIDALPELVDKID 680

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           QR+HT ++ + T TGRL+S  PNLQNIPI+T+  ++IR+AFI      L+SADYSQIELR
Sbjct: 681 QRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQQDWLLVSADYSQIELR 740

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH+++   L   ++N+ D+H + A  +F  + E+++PQ R   KTINF +IYG+   R
Sbjct: 741 ILAHLSQEQVLLNAYKNADDVHSVTARLLF--DKEEITPQERTLGKTINFGVIYGMGSQR 798

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            A +  +   E  ++I +Y  R+  + +Y+E  K     NGYV TI GRR +++  +   
Sbjct: 799 FAREAGVSAVEGKEFINKYRQRYAKVFDYLESMKKEAIANGYVTTILGRRRYFNFFDDNL 858

Query: 877 SSIR------------NINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
              R            NIN       RAA NAPIQGS+ADI + AM+ + + L++++   
Sbjct: 859 YRFRGHDPQNIDLNKININYNDSQLLRAAANAPIQGSSADIIKIAMVKIQEILDNYQ--A 916

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +LLQ+HDELVFE+P +E       I  +ME A    + L VPL V I    NW E
Sbjct: 917 NLLLQVHDELVFEIPHQEWEELEDKIKETMENA----VTLTVPLVVEINTGKNWME 968


>gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135]
 gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135]
          Length = 919

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 343/986 (34%), Positives = 533/986 (54%), Gaps = 89/986 (9%)

Query: 6   HLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            ++L+D  + I+R ++     PL ++K  G  VNA  GF   L+ ++    KE    +  
Sbjct: 3   EIYLIDALNIIFRNYHVMKNNPLTNKK--GENVNAFIGFFKTLFFII----KEKNPENLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR + YP YKA R   P+ L+PQ+  ++ +     IP  EIQG+EADD+IA
Sbjct: 57  VTFDSETQTFRQQKYPSYKATRDAPPDNLIPQIYWIKESLIKANIPMFEIQGYEADDLIA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   AE   +   IIS DKDL+QL+S  T +         ++D ++V+KK+G+   ++ 
Sbjct: 117 SFAKKAEINNYLTYIISPDKDLLQLMSAKTKILKIENSSFVEMDNDYVMKKFGVNKSQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              ++ GD  DNIPGI GIG K AA LL E+  L  I  N   I  K  RE +L+  E A
Sbjct: 177 DYLSIVGDRSDNIPGIKGIGEKGAAKLLNEFQTLNGIYDNLDSINNK-YREILLKERENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +L+ L  D+ +   LE   LE+     L+ F +    T LI    T      A   
Sbjct: 236 FLSYELISLVEDLELP-ALEKFKLENLKEDILLLF-EEYSATTLIKSYKTILKKRYA--- 290

Query: 301 PVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                  T + +    ET I++ DT I       L   TS  N+ +T Q+          
Sbjct: 291 -------TNQTQKSLFETNINQTDTEI-------LQTTTSHSNALKTIQE---------- 326

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I+  + +   ++KL+     +    T +++   ++ I I++S       
Sbjct: 327 ----ENIKYETILKKEQLDLLIEKLKQANYVAIDTETTSLNVHEAQIIGISVS------- 375

Query: 420 TSFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             FK  E+ +I +      ++  K T+ K  I+    +FF+ +  L IG N K+D  +L 
Sbjct: 376 --FKEFESYYIPI------ETKEKKTIEKAYIIQKFNEFFKAQPKL-IGQNYKFDYKILK 426

Query: 478 RYGIS-MRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR---KEILKSRKS--SIPI 530
           ++  + +  + D M+ +YV+D + + S D   +A+K+L +     +EI+    +   IP+
Sbjct: 427 KHEFNVIPPYFDTMIAAYVIDPNTKVSLDF--LAEKYLMHKNIRYEEIVAQNGTLKDIPL 484

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           + +S+     +A E++++  +L+ +   KL  + L ++   ++ P  +V+++ME  GI +
Sbjct: 485 EMVSN-----YAAEDADITFRLFKIFTKKLKEDNLENLMTDIEMPFSNVITEMEENGIYL 539

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTG 648
           D+D L+Q   E+ K L  +E  I    G +FNL+S KQL  +LF +L    P   K    
Sbjct: 540 DKDYLRQYGYELDKELKLIENEIIKSIGIEFNLNSTKQLHTVLFERLNLVLPQNVK---- 595

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T  + LE I      I K ++++RQ++K+K+TY D+L   +N++T ++HT +    T
Sbjct: 596 QDSTDIKVLETIKEQHESIPK-LIQYRQIAKLKNTYTDNLIEFVNEKTNKIHTNFIQTKT 654

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGR++S  PNLQNIPIK + G+KIR AF        ISADYSQIEL ILAH+++   L 
Sbjct: 655 ATGRISSTSPNLQNIPIKDEKGRKIREAFKPEKGNIFISADYSQIELVILAHLSEDESLI 714

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+N  DIH   A+++F V+ EKV+  MRR AK+INF IIY +S FRL+ +L I R EA
Sbjct: 715 EAFKNKKDIHIKTASQLFKVDEEKVTSSMRRIAKSINFGIIYRMSAFRLSKELSIKREEA 774

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I  YF+ +  I  +I+   +FVR+NGY ET+  RR +  EINS   S R+  ER AI
Sbjct: 775 QKFIDSYFNLYSKIKTFIQNQIDFVRKNGYSETLLKRRRYIKEINSQNYSERSGAERIAI 834

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+ IQGSA+DI + AMI V+  L+   L +K+LLQ+HDE++ E PE+E    ++II   M
Sbjct: 835 NSTIQGSASDIMKIAMIKVYNELKSKNLKSKILLQVHDEMLIESPEQECEEVNKIIKTMM 894

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A  P   L++PLKVNI+   +W E
Sbjct: 895 ENAY-P---LKIPLKVNIETGKSWGE 916


>gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly]
 gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly]
          Length = 922

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 341/985 (34%), Positives = 538/985 (54%), Gaps = 90/985 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++L+D  + I+R ++     PL + K  G  V+A  GF   L+ +++  + E++     V
Sbjct: 4   IYLIDALNIIFRNYHVMKNNPLTNSK--GENVSAFIGFFKTLFFIIKEKKPENLI----V 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E+QG+EADD+IA+
Sbjct: 58  TFDSETQTFRQKQYPSYKATRDAPPDNLIPQIHWIKEGLIKANIPMFELQGYEADDLIAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181
           +T  AE+  +   IIS DKDL+QL+S  T ++       +++  ++VIKK+GI   ++  
Sbjct: 118 FTKKAEQNNYLTYIISPDKDLLQLISNQTKIFKIENSSFLEMNNDYVIKKFGINKSQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             ++ GD  DNIPGI GIG K A+ LL E+  L  I  N S I  K  RE +L   E A 
Sbjct: 178 YLSIVGDPSDNIPGIKGIGQKGASKLLNEFHTLNGIYENLSLINNK-YREILLREKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN-IE 300
           LS KL+ L  D+ +   LE   LE+     ++ F +    T + +  +     +  N ++
Sbjct: 237 LSYKLISLVEDLELP-SLETFRLENLKEDIILLFEEYSATTLIKSYKSLLKKKNIINTMQ 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             + DIN         +T+ +++ T K  Q ++L   T K   E+               
Sbjct: 296 KSIFDIN---------KTKANKENT-KDLQSTTLYANTLKTIQEE--------------- 330

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I+  +++   +++L+     +    T +++ + S  I I++S        
Sbjct: 331 ----NVKYKTILKKEELDLLIEQLKKASYIAIDTETTSINVYESNIIGISVS-------- 378

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E+ +I +      ++  KN++ KE I+    + F ++  L IG N K+D  VL R
Sbjct: 379 -FKEFESYYIPI------ETKEKNSIGKEYIIQKFNELFNSQPKL-IGQNYKFDYKVLKR 430

Query: 479 YGIS-MRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR---KEIL--KSRKSSIPID 531
           +G + +  + D M+ +YV+D + + S D   +A K+L +     +EI+   S    IP++
Sbjct: 431 HGFNVISAYFDTMIAAYVIDPNTKVSLDF--LAAKYLMHKNIKYEEIVPQHSTLKDIPLE 488

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             S+     +A E++++  +L+ +LR KL  + L  + + ++ P  +V+ +ME  GI +D
Sbjct: 489 IASN-----YAAEDADITFRLFNILRKKLKEDNLESLMKNIEMPFSNVIIEMEENGIYLD 543

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQ 649
            + L Q   E+ + L ++E  +    G +FNL+S KQL  ILF KL    P   K    Q
Sbjct: 544 SNYLTQYGHELEQELKTIENEVIQSIGIEFNLNSSKQLHTILFEKLNIIVPKNVK----Q 599

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + LE I      I K ++ +RQL+K+K+TY D+L   IN++T ++HT +    T 
Sbjct: 600 DSTDIKVLETIKDQHESIEK-LINYRQLAKLKNTYTDNLIEFINEKTNKIHTNFIQTKTA 658

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPL 767
           TGR++S  PNLQNIPIK + G+KIR AF   PTK    ISADYSQIEL ILAH+++   L
Sbjct: 659 TGRISSTAPNLQNIPIKNERGRKIRAAF--KPTKGNIFISADYSQIELVILAHLSEDESL 716

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F +  DIH   A+++F V+   ++P MRR AK+INF IIY +S FRL+ +L I R E
Sbjct: 717 IEAFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQELSIKREE 776

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A ++I  YF+ +  I  +I+   +FV+QNGY ET+  RR +  EINS     R   ER A
Sbjct: 777 AQNFIDSYFNLYSKIKTFIQNQIDFVKQNGYSETLLKRRRYIREINSQNYLERTGAERMA 836

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           IN+ IQGSA+DI + AMI V+   +++ L +K+LLQ+HDE++ E PEEE   A QII+  
Sbjct: 837 INSIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIESPEEECEKA-QIIIKE 895

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           M +   P   L++PLK NI+   +W
Sbjct: 896 MMENAYP---LKIPLKTNIETGKSW 917


>gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1]
 gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1]
          Length = 922

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 339/983 (34%), Positives = 537/983 (54%), Gaps = 86/983 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++L+D  + I+R ++     PL + K  G  V+A  GF   L+ +++  + E++     V
Sbjct: 4   IYLIDALNIIFRNYHVMKNNPLTNSK--GENVSAFIGFFKTLFFIIKEKKPENLI----V 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E+QG+EADD+IA+
Sbjct: 58  TFDSETQTFRQKQYPSYKATRDAPPDNLIPQIHWIKEGLIKANIPMFELQGYEADDLIAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181
           +T  AE+  +   IIS DKDL+QL+S  T ++       +++  ++VIKK+GI   ++  
Sbjct: 118 FTKKAEQNNYLTYIISPDKDLLQLISNQTKIFKIENSSFLEMNNDYVIKKFGINKSQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             ++ GD  DNIPGI GIG K AA LL E+  L  I  N S I  K  RE +L   E A 
Sbjct: 178 YLSIVGDPSDNIPGIKGIGQKGAAKLLNEFHTLNGIYENLSLINNK-YREILLREKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN-IE 300
           LS KL+ L  D+ +   LE   LE+     ++ F +    T + +  +     +  N ++
Sbjct: 237 LSYKLISLVEDLELP-SLETFRLENLKEDIILLFEEYSATTLIKSYKSLLKKKNIINTMQ 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             + DIN         +T+ +++ T K  Q ++L   T K   E+               
Sbjct: 296 KSIFDIN---------KTKANKENT-KDLQSTTLYANTLKTIQEE--------------- 330

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I+  +++   +++L+     +    T +++ + S  I I++S        
Sbjct: 331 ----NVKYKTILKKEELDLLIEQLKKASYIAIDTETTSINVYESNIIGISVS-------- 378

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E+ +I +      ++  KN++ K+ I+    + F ++  L IG N K+D  VL R
Sbjct: 379 -FKEFESYYIPI------ETKEKNSIGKDYIIQKFNELFNSQPKL-IGQNYKFDYKVLKR 430

Query: 479 YGIS-MRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR---KEIL--KSRKSSIPID 531
           +G + +  + D M+ +YV+D + + S D   +A K+L +     +EI+   S    IP++
Sbjct: 431 HGFNVISAYFDTMIAAYVIDPNTKVSLDF--LAAKYLMHKNIKYEEIVPQHSTLKDIPLE 488

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             S+     +A E++++  +L+ +LR KL  + L  + + ++ P  +V+ ++E  GI +D
Sbjct: 489 IASN-----YAAEDADITFRLFNILRKKLKEDNLESLMKNIEMPFSNVIIEIEENGIYLD 543

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + L Q   E+ + L ++E  +    G +FNL+S KQL  ILF KL        K  Q  
Sbjct: 544 SNYLTQYGHELEQELKTIENEVIQSIGIEFNLNSSKQLHTILFEKLNIIVSKNVK--QDS 601

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + LE I      I K ++ +RQL+K+K+TY D+L   IN++T ++HT +    T TG
Sbjct: 602 TDIKVLETIKDQHESIEK-LINYRQLAKLKNTYTDNLIEFINEKTNKIHTNFMQTKTATG 660

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQ 769
           R++S  PNLQNIPIK + G+KIR AF   PTK    ISADYSQIEL ILAH+++   L +
Sbjct: 661 RISSTAPNLQNIPIKNERGRKIRAAF--KPTKGNIFISADYSQIELVILAHLSEDESLIE 718

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  DIH   A+++F V+   ++P MRR AK+INF IIY +S FRL+ +L I R EA 
Sbjct: 719 AFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQELSIKRDEAQ 778

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF+ +  I  +I+   +FV+QNGY ET+  RR +  EINS     R   ER AIN
Sbjct: 779 NFIDSYFNLYSKIKTFIQNQIDFVKQNGYSETLLKRRRYIREINSQNYLERTGAERMAIN 838

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           + IQGSA+DI + AMI V+   +++ L +K+LLQ+HDE++ E PEEE   A QII+  M 
Sbjct: 839 SIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIESPEEECEKA-QIIIKEMM 897

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
           +   P   L++PLK NI+   +W
Sbjct: 898 ENAYP---LKIPLKTNIETGKSW 917


>gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
 gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
          Length = 948

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 325/1005 (32%), Positives = 516/1005 (51%), Gaps = 103/1005 (10%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  + IYRA+YA    PL+  +  G   +A+ GF + L  ++   R + IA    V
Sbjct: 4   LYLLDAYALIYRAYYAFINRPLVDAQ--GRDTSALYGFASTLQDIIDKERPDYIA----V 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D P  TFR++ YP+YKANRP+ PE +   +P ++   QA+ IP + ++G+EADD+I T
Sbjct: 58  AIDMPGGTFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
            +  A + G+ V +++ DKD  QLV P   ++   +     E +  E +  K+GI  P +
Sbjct: 118 LSRQAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYGIRYPLQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+    L GDS DN+PG PGIG   A  LL+E+ ++E+I     ++K    ++ +L   E
Sbjct: 178 MIDYLGLVGDSSDNVPGCPGIGKVAAQRLLEEFDSIEDIYARIDQVKPTYAKK-LLAAKE 236

Query: 239 TARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              LSR LV + TDVP +T   + +     +   +    K   FT L+ R+        A
Sbjct: 237 QTILSRHLVTIVTDVPGVTFDPDQMKWRGPDHAAVERIFKEFAFTSLLKRIGK-----PA 291

Query: 298 NIEPVV--LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
              P V   D+  +                  T   S  + + +   S   P        
Sbjct: 292 ESTPQVGLFDLGGS-----------------STPASSPATIEVTGPVSAAAP-------- 326

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L  Y     ++T++   + + Q  ++L  I   +F   TD +DA  +  + +++   +
Sbjct: 327 --LENYKTVGATFTEVQGYEAVSQLAKQLAGISVVAFDTETDGLDALCAGIVGMSLCADE 384

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           Q        +  FI L     +           ILS LK   ++E  LK+ HN K+D  V
Sbjct: 385 Q--------QAYFIPLPESAEE--------AAHILSPLKDLMQDERVLKVAHNAKFDLEV 428

Query: 476 LHRYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKSSIPIDK 532
           L RYG+       D ML  Y++D+ +  H +  +A   L Y   R + L  ++S      
Sbjct: 429 LTRYGLPEAHPLYDTMLAHYLIDADQG-HSLDELAGGLLRYDTIRYKDLAPQESFALRTD 487

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +    + ++A E++ V L+L+  L  +L    ++LL     ++ P++ V+  ME  GI +
Sbjct: 488 VDPKLLCDYASEDAYVTLRLYHALHKQLSPTEQRLL---TEVEIPLLYVLMHMEQRGIVL 544

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL--SSPKQLGDILFTKLK-FPSGAKTKT 647
           D + L++   E+ +++L LE+ I   S    NL  +SPKQ+G++LF +LK      KTKT
Sbjct: 545 DIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKT 604

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T  + L  +    +P++  IL++R+  K+ +TY D LP  +     ++HT Y+ A 
Sbjct: 605 GNYVTNEETLLPLRS-LHPVVALILDYREARKLLNTYIDPLPK-MCYPDGKLHTSYNQAV 662

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP--------------------TKKLIS 747
           T TGRL+S  PNLQNIPI++DLG+ +RRAF++ P                       L+S
Sbjct: 663 TATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPIGAVLLS 722

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQ+ELR++AH+++   +   F +  DIH   AA++F V  E+V+P MR  AKT NF 
Sbjct: 723 ADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFG 782

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I YGI+P+ L+ +L IP  EAA+ IK YF  F  I  ++ +      + GY ET FGRR 
Sbjct: 783 INYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTETAFGRRR 842

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
               + + + + R   ER AINAPIQG+AADI + AMI V + L   +L + ++LQ+HDE
Sbjct: 843 QLRNLRTARGAQRGNEERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDE 902

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LV  V  +E+   + ++  +ME A  P+ +  VPL V I    +W
Sbjct: 903 LVLNVYLDELDRVTALVREAMEGAW-PECS--VPLVVEIGTGKDW 944


>gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
          Length = 1030

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 312/1002 (31%), Positives = 512/1002 (51%), Gaps = 81/1002 (8%)

Query: 9    LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
            ++DG+S ++RAF+A        DG   NA+ GF NML KL+++   + I       FD  
Sbjct: 72   VIDGNSLMHRAFHAIMQPMSAPDGRSTNALLGFFNMLIKLVRSFSPDGII----CAFDKG 127

Query: 69   AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
                R ++ P YKA RP +   L  Q P+V+   +A  IP +E+QG+E DDI+ T  +  
Sbjct: 128  KPQVRIDMLPQYKAQRPPMDPSLHEQFPMVKELLRALQIPVVELQGWEGDDILGTLAHQG 187

Query: 129  EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKWGIPPEK 178
            E +G+++ + + D+D+ QL +    +  T K          E+  D+ H     GI P  
Sbjct: 188  ELQGYSMLLFTGDRDIYQLATEHVSVVSTKKGVSDVRIMTPEDVDDLYH-----GITPNL 242

Query: 179  MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            +     L GD+ DNIPG+PGIG K AA L+ EYG+LE ++ +A ++   K  EN+  + +
Sbjct: 243  VPDFYGLKGDTSDNIPGVPGIGPKRAAALIVEYGSLEGVIAHADQVS-GKMGENLRNHID 301

Query: 239  TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAA 297
             ARLS+++  +R D PIT+ L        +   +     AL FT L+ ++       + A
Sbjct: 302  DARLSKRVATIRRDAPITVDLCAAAFPTFDPAEVARAFCALGFTNLVPKLLRFLPSLNGA 361

Query: 298  NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +I+ ++ D  T   +  A+     + TT+      SL+      +++ TP    ++R Q 
Sbjct: 362  DIKGIIHDAATAAKRNSAVLPASAQHTTMSAD---SLTSSVQAHSTQATPLDSLVDRAQ- 417

Query: 358  LSQYPINNDSYTKIVNTKDIQQWVQKLETIG---SASFKIITDTM-DAFHSKPIAIAIST 413
                          V+  + +Q   ++ T     SA F     T   AF  + ++  I  
Sbjct: 418  -------------TVHASEEEQTQSEVNTYAPDYSALFPACVQTQAHAFIKRVVSCGIWV 464

Query: 414  LDQKDDTSFKVETIFIDLSVHTSQDS-----TGKNTLTK----EILSYLKKFFENEHFLK 464
                +  S K     +  S  T  D+     T   TL +    ++ S LK   ++ H + 
Sbjct: 465  ACAYEPASMKSAQENVQPSFDTLLDTHTLWVTDGTTLAQFSGTDVSSVLKTLVKSGHVIA 524

Query: 465  IGHN---------IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            +            +  +   L    IS     D+ L +Y+L+S  + +   ++   +L  
Sbjct: 525  LNCKALLHVLYPPVSSEPASLELSDISTAALFDVGLAAYLLNSDANDYSWQTLCSAYL-- 582

Query: 516  TRKEILKSRKSSIPIDKISDS-QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
                      + +  D   D+ +  E+A+E +  +  L+ +LR  L  +    ++  L+ 
Sbjct: 583  ---------PTFVYPDTTDDTDEPNEYALE-AIAVRALYPVLRELLHTDGSDDLFYELEL 632

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P+I V+  ME  GI  D+ LL + S  +S  L ++   +  L+ + FN+ SP QL  +LF
Sbjct: 633  PLIPVLLHMERNGIYCDKHLLAEQSRALSHELNAMSLELRRLAQQDFNIDSPMQLSHVLF 692

Query: 635  TKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
                 P+    KT+ G + T AQ L  ++  D  + + IL++R+  KIK+TY D+L + I
Sbjct: 693  DVWGLPTKGLKKTRRGYYSTNAQTLASLSMADERV-QLILDYRERMKIKNTYLDALVHDI 751

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
             +   R+H+ ++     TGRL+S +PNLQNIP ++ LG ++R+AF+ P     ++ DYSQ
Sbjct: 752  -RSDGRIHSTFNQTIAATGRLSSSDPNLQNIPTRSSLGHRVRKAFVLPRNHLFLACDYSQ 810

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+LAH+++   L   F+   D H   AA IF V+ ++V+P +R  AK +NF I+YG 
Sbjct: 811  IELRLLAHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNFGIVYGQ 870

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
              F LAT L+I R EA + I RYF  +PG+ ++++++  F R++ YV T++GR+ H  +I
Sbjct: 871  QAFGLATSLKISRKEAQEMIDRYFEAYPGVRKFLDESVQFAREHSYVPTMYGRKRHIAQI 930

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            +S    +R+  ER A+N P+QGSAADI + AMI V K      LA+K++LQIHDEL FEV
Sbjct: 931  DSRNFQLRSFAERTAMNHPMQGSAADIIKLAMIEVEKQFAQLGLASKLILQIHDELDFEV 990

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              EE+   S ++  +ME      + LRVPL   I  ++NW +
Sbjct: 991  VPEELERVSSVVKRAMEGV----VTLRVPLIAEISYADNWAD 1028


>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 743

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 288/796 (36%), Positives = 445/796 (55%), Gaps = 67/796 (8%)

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETARLSR 244
           DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L     A LS 
Sbjct: 1   DNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKSNADLSY 60

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L  ++TDV + +  + L+L +    +LI +    EF + +N V    D           
Sbjct: 61  TLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-------- 112

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              TTE               +K +Q+ + S   S +  E TP+              I+
Sbjct: 113 --QTTEQP-------------VKMNQYKATSQDQSAV--ENTPK------------IQID 143

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++   D+ +W++KL +    +    TD++D   +  + I+ + L+  +     +
Sbjct: 144 RTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGEAAYLPL 202

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R+GI ++
Sbjct: 203 QLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFARHGIELQ 253

Query: 485 GFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  ++I   Q  
Sbjct: 254 GVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIPLEQAT 311

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D L   
Sbjct: 312 EYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQ 371

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T  + LE
Sbjct: 372 SNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLE 431

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL+S +P
Sbjct: 432 ELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDP 490

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F    DIH
Sbjct: 491 NLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIH 550

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+  YF R
Sbjct: 551 RSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMDLYFQR 610

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+QG+AAD
Sbjct: 611 YPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAAD 670

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A      L
Sbjct: 671 IIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA----EL 725

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V + V  NW E
Sbjct: 726 VVPLIVEVGVGKNWDE 741


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 329/982 (33%), Positives = 510/982 (51%), Gaps = 77/982 (7%)

Query: 7   LFLVDGSSFIYRA---FYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             ++D    +YR    F   PL++ K  G  V++I GF    + L+        A + A+
Sbjct: 11  FLIIDAFGILYRYHFIFLKRPLINSK--GQNVSSINGFLRTYFSLINTYP----ADYTAI 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D    TFR+EIY  YK NR  +P+ L  Q+P++     A GI  I +  +EADDI+  
Sbjct: 65  ALDSSRKTFRSEIYKAYKENRESMPDDLRSQIPILYNLIDALGITRIVLDNYEADDIVGC 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEKMV 180
                +KE     I S DKD++QLV   T +  + K+ ++   DI  V +K G+ P +++
Sbjct: 125 IAQNNKKENIKTIIYSPDKDILQLVDENTKVIASNKDNELIEYDINMVKEKRGVYPNQII 184

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L +L GD+ DNIPG+ GIG KTA  LL+EY  L+NI  N   IK K  +E ++   + A
Sbjct: 185 DLLSLMGDASDNIPGVKGIGEKTALKLLEEYDTLDNIYKNIDSIKGK-IQEKLIADKDNA 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S +L  ++ ++           E+ N    I + K +E  K+             NI+
Sbjct: 244 YMSYELATIKREI-----------EELN----IDY-KEIEKNKI-------------NID 274

Query: 301 PVVLDINTTENKGI--AIETEIDRDTTIKTSQFSSLSDQTSK-INSEQTPQKLFLERLQK 357
            V   ++  E K I   I + I   ++ K  +   +S QT +  N E   +K  +     
Sbjct: 275 EVNKILDNLELKQIRDKINSYIYGSSSKKKEEKVQISKQTKQETNVEDNTEKTIV----- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +S    NN  Y  I N  ++Q  +  +           T  +D    + I I+ +   + 
Sbjct: 330 VSNAKDNNAKYYLIENETELQNLLNDINAKKLVCIDFETTGLDTLTDEIIGISFAIKSK- 388

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  E  ++DLS  T+ D   K    K +   L K    E    IGHN+KY+  ++ 
Sbjct: 389 -------EAFYLDLSGRTNID---KEACKKLVFDTLAK----EDIKIIGHNLKYEYKMMR 434

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
                M   + D M+ +Y+++  R  +++  +A  +LSY      +I  + K ++   ++
Sbjct: 435 AIDKKMGNMYFDTMVAAYLINPSRGRYNMDDLALSYLSYNTIKYSDITDNAKKTLLDVEL 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            D  V E+A E++++  + +    P L    L  ++  ++ P+I V++ ME  G+ I  +
Sbjct: 495 KD--VVEYACEDADITFRFYEYFAPLLNTYNLEDLFFNVEMPLISVLADMEFDGVYISTE 552

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            +K +S E +  L   +  IY+ +GE+FNL SPKQL  ILF KLK  S  KTKTG + T 
Sbjct: 553 KMKSLSEEYASLLEKTKAKIYEKAGEEFNLQSPKQLEYILFEKLKINSTKKTKTGAYSTD 612

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L ++      I + +L +R+ SK+K+TY D  P  ++K+T R+H  ++   T TGRL
Sbjct: 613 EEVLREL-AQREKIAEYMLTYRKYSKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGRL 671

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP + D G+ IR  FI+     LI+ADYSQIELR+LAH +    L + F+N
Sbjct: 672 SSSEPNLQNIPARGDEGKDIRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKN 731

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIHR  A +I+ V+ E V+P MR  AK INFSIIYG + F L+ +L I R EA D+IK
Sbjct: 732 NDDIHRKTAMKIYSVSKEHVTPSMRNTAKIINFSIIYGKTAFGLSKELNISRKEADDFIK 791

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAPI 892
            YF  +  +  + EK    V+  GYV T+ GR R     INS  + +RN  ER A+N  I
Sbjct: 792 GYFSTYSQVKPFCEKVIEDVKAKGYVRTMLGRIRDLSKTINSSNAVVRNEAERMALNTLI 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ + AMI++HK  ++H    K+++Q+HDELV EV E+E   A  I+   ME + 
Sbjct: 852 QGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKESDKAMTIMKEIMEHS- 910

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              +   VP+ V+I    +W +
Sbjct: 911 ---VKTNVPITVDIHKGLSWGD 929


>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
 gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
          Length = 957

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 333/1017 (32%), Positives = 518/1017 (50%), Gaps = 113/1017 (11%)

Query: 9   LVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +VDG S  +RA+YA         R   G+P +   GF   L  LL+  +      + A+ 
Sbjct: 1   MVDGHSLAFRAYYAFAKGREGGLRTSTGIPTSVCYGFLKNLLDLLKTEKPH----YLAIA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++    YKANR + PE  +P L  ++    A  +P +   G+EADD++ T 
Sbjct: 57  FDLGGPTFRHKADETYKANRAETPEDFIPDLENLQELLTAMDLPIVVEPGYEADDVLGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--------TTCLYDTVKEE-----KIDIEHVIKK 171
            Y A ++GF V I+S D+DL QLV P         + +Y                 V +K
Sbjct: 117 AYQASQQGFKVKILSGDRDLFQLVQPDDRVRILYMSNIYSAASRSGAPPGSFGPTEVQEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+  E++V  +AL GDS DNIPG+ GIG KTA  LL EYG L+NI  +  +IK   +++
Sbjct: 177 MGVTVEQIVDYKALCGDSSDNIPGVKGIGDKTAVKLLTEYGTLDNIYASVDQIKGAVQKK 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRV 288
            ++   E A  S+ +  +  DVP+ +  +   L+     ++   L+ LEF      IN++
Sbjct: 237 -LITGKEAAYHSQFMARIVLDVPLKVGPKDFELKGFTSDKVSPVLEKLEFQSFLRQINQL 295

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDT-TIKTSQFSSLSDQTSKINSEQTP 347
              +  +A  I P     +   + G         DT  ++T     L  +        TP
Sbjct: 296 QKQFGGEA--IAPPAPTASPVTDDGDDTWFFSAEDTEAVQTPPPPQLVPRIV-----DTP 348

Query: 348 QKL-----FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            KL      LE     +Q P+  D+ T  ++ +D       L  IG             +
Sbjct: 349 AKLKELITILESCTDGNQ-PVAWDTETDSLSPRDAH-----LVGIGC-----------CW 391

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
             +  AIA   +  K+  +  +ET    L                      +   E++ +
Sbjct: 392 QGEEQAIAYIPVGHKEGDNLDLETALEGL----------------------RPILESDVY 429

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
            K+  N K+D+LV    GI ++G   D ML +YVL+  R SH++  +++ +L  T K   
Sbjct: 430 PKVLQNAKFDRLVFQFQGIQLQGVVFDTMLANYVLNPER-SHNLTDLSRNYLQITAKSYK 488

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVV 580
           +  K    I  +S +QV E+   +     QL   L  +L     LH +++ ++ P+  V+
Sbjct: 489 ELVKKGQTIADLSITQVAEYCGLDVFTTYQLREKLEAELAAIPSLHGLFQEVELPLEAVL 548

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           + ME +G++IDQ+ L+ +S ++  +L  LE   Y+L+GE FNL SPKQL +ILF +L+  
Sbjct: 549 AVMETSGVRIDQEYLQTLSTQLEADLQRLEAGAYELAGEIFNLGSPKQLSEILFGRLELD 608

Query: 640 -PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                KTK G + T A  LE++  GD+PII  +LE+R L+K+KSTY D+LP  +   T R
Sbjct: 609 VKKSRKTKLG-YSTDAATLEKLQ-GDHPIIDVLLEYRTLAKLKSTYVDALPMLVRDDTHR 666

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +HT ++ A T TGRL+S  PNLQNIPI+T+  ++IR AFI   +  L++ADYSQIELRIL
Sbjct: 667 IHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRAAFIPESSWILMAADYSQIELRIL 726

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+++   L + + N  D+H + A  +  +  ++++ + RR AK INF +IYG+ P R A
Sbjct: 727 AHLSQEPRLLEAYRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMGPHRFA 784

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYDEINSPK 876
            +  +  SEA D+I+R++ R+P +  Y+++ +      GYVETI GRR    +D     K
Sbjct: 785 REAGVKYSEAKDFIQRFYDRYPEVFAYLQRMEREAVSQGYVETILGRRRYFEFDSRGLKK 844

Query: 877 SSIRNINE-------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
              + + E                   RAA NAPIQGS+AD+ + AM+ +  +LE +K  
Sbjct: 845 YRGKALEELAEVDLSDIKMSSYDRGLLRAAANAPIQGSSADLIKIAMVQLQAALEPYK-- 902

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +++L+Q+HDELV EVP +E+      I  +ME A LP   L +PL   +    NW E
Sbjct: 903 SRLLMQVHDELVLEVPVDEVDDVRSQIKTTMETA-LP---LSIPLVAEVHTGANWME 955


>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 948

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 323/1005 (32%), Positives = 514/1005 (51%), Gaps = 103/1005 (10%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  + IYRA+YA    PL+  +  G   +A+ GF + L  ++   R + IA    V
Sbjct: 4   LYLLDAYALIYRAYYAFINRPLVDAQ--GRDTSALYGFASTLQDIIDKERPDYIA----V 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D P  TFR++ YP+YKANRP+ PE +   +P ++   QA+ IP + ++G+EADD+I T
Sbjct: 58  AMDMPGGTFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
            +  A + G+ V +++ DKD  QLV P   ++   +     E +  E +  K+GI  P +
Sbjct: 118 LSRQAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYGIRYPLQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+    L GDS DN+PG PGIG   A  LL+E+  +E+I     ++K    ++ +L   E
Sbjct: 178 MIDYLGLVGDSSDNVPGCPGIGKVAAQRLLEEFDTIEDIYARIDQVKPTYAKK-LLAAKE 236

Query: 239 TARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              LSR LV + TDVP +T   + +     +   +    K   FT L+ R+        A
Sbjct: 237 QTMLSRHLVTIVTDVPGVTFDPDQMKWRGPDHAAVERIFKEFAFTSLLKRIGK-----PA 291

Query: 298 NIEPVV--LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
              P V   D+  +                  T   S  + + +   S   P        
Sbjct: 292 ESTPQVGLFDLGGS-----------------STPASSPATIEVTGPVSAAAP-------- 326

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +  Y     ++T++   + + Q  ++L      +F   TD +DA  +  + +++   +
Sbjct: 327 --MENYKTVGVTFTEVQGYEAVSQLAKQLAGSSVVAFDTETDGLDALCAGIVGMSLCADE 384

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           Q        +  FI L     +           ILS LK   ++E  LK+ HN K+D  V
Sbjct: 385 Q--------QAYFIPLPESAEE--------AAHILSPLKDLMQDERVLKVAHNAKFDLEV 428

Query: 476 LHRYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKSSIPIDK 532
           L RYG+       D ML  Y++D+ +  H +  +A   L Y   R + L  ++S      
Sbjct: 429 LTRYGLPEAHPLYDTMLAHYLIDADQG-HSLDELAGGLLRYDTIRYKDLAPQESFALRTD 487

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +    + ++A E++ V L+L+  L  +L    ++LL     ++ P++ V+  ME  GI +
Sbjct: 488 VDPKLLCDYASEDAYVTLRLYHALHKQLSPTEQRLL---TEVEIPLLYVLMHMEQRGIVL 544

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL--SSPKQLGDILFTKLK-FPSGAKTKT 647
           D + L++   E+ +++L LE+ I   S    NL  +SPKQ+G++LF +LK      KTKT
Sbjct: 545 DIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKT 604

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T  + L  +    +P++  IL++R+  K+ +TY D LP  +     ++HT Y+ A 
Sbjct: 605 GNYVTNEETLLPLRS-LHPVVALILDYREARKLLNTYIDPLPK-MCYPDGKLHTSYNQAV 662

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP--------------------TKKLIS 747
           T TGRL+S  PNLQNIPI++DLG+ +RRAF++ P                       L+S
Sbjct: 663 TATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPIGAVLLS 722

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQ+ELR++AH+++   +   F +  DIH   AA++F V  E+V+P MR  AKT NF 
Sbjct: 723 ADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFG 782

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I YGI+P+ L+ +L IP  EAA+ IK YF  F  I  ++ K      + GY ET FGRR 
Sbjct: 783 INYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNKAIALATERGYTETAFGRRR 842

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
               + + + + R   ER AINAPIQG+AADI + AMI V + L   +L + ++LQ+HDE
Sbjct: 843 QLRNLRTARGAQRGNEERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDE 902

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LV  V  +E+   + ++  +ME A  P+ +  +PL V I    +W
Sbjct: 903 LVLNVYLDELDRVTALVREAMEGAW-PECS--IPLVVEIGTGKDW 944


>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
 gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
          Length = 948

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 328/1015 (32%), Positives = 522/1015 (51%), Gaps = 115/1015 (11%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  + IYRA+YA    PL+  +  G   +A+ GF + L  ++   R + IA    V
Sbjct: 4   LYLLDAYALIYRAYYAFINRPLVDAQ--GRDTSALYGFASTLQDIIDKERPDYIA----V 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D P  TFR++ YP+YKANRP+ PE +   +P ++   QA+ IP + ++G+EADD+I T
Sbjct: 58  AMDMPGGTFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
            +  A + G+ V +++ DKD  QLV P   ++   +     E +  E +  K+GI  P +
Sbjct: 118 LSRQAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYGIRYPLQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+    L GDS DN+PG PGIG   A  LL+E+  +E+I     ++K    ++ +L   E
Sbjct: 178 MIDYLGLVGDSSDNVPGCPGIGKVAAQRLLEEFDTIEDIYARIDQVKPTYAKK-LLAAKE 236

Query: 239 TARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              LSR LV + TDVP +T   + +     +   +    K   FT L+ R+         
Sbjct: 237 QTMLSRHLVTIVTDVPGVTFDPDQMKWRGPDHAAVERIFKEFAFTSLLKRI--------- 287

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD--QTSKINSEQTPQKLFLERL 355
                         K  A   ++       +S   SL    + +   S  TP        
Sbjct: 288 -------------GKPAATAAQVGLFDLGGSSAAPSLPATIEVAGPVSATTP-------- 326

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L  Y     ++T++   + + Q  ++L      +F   TD +DA  +  + +++   D
Sbjct: 327 --LENYKTVGVTFTEVQGYEAVSQLAKQLAGSSVVAFDTETDGLDALCAGIVGMSLCA-D 383

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +K       +  FI L   +++++T        ILS LK+  ++E  LK+ HN K+D  V
Sbjct: 384 EK-------QAYFIPLP-ESAEEAT-------HILSPLKELMQDERVLKVAHNAKFDLEV 428

Query: 476 LHRYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--------TRKEILKSRKS 526
           L RYG+   R   D ML  Y++D+ +  H +  +A   L Y        +  EI   R  
Sbjct: 429 LTRYGLPEARPLYDTMLAHYLIDADQG-HSLDELAGGLLRYDTIRYKDLSPLEIFALRTD 487

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQME 584
             P        + ++A E++ V L+L+  L  +L    ++LL     ++ P++ V+  ME
Sbjct: 488 VDP------KLLCDYASEDAYVTLRLYQALHKQLSPTEQRLL---TEVEIPLLYVLMHME 538

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL--SSPKQLGDILFTKLK-FPS 641
             GI +D + L++   E+ +++L LE+ I   S    NL  +SPKQ+G++LF +L+    
Sbjct: 539 QRGIVLDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELQIMEK 598

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T  + L  +    +P++  IL++R+  K+ +TY D LP  +     ++HT
Sbjct: 599 PRKTKTGSYVTNEETLLPLRS-LHPVVALILDYREARKLLNTYIDPLPK-MCYPDGKLHT 656

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-------------------- 741
            Y+ A T TGRL+S  PNLQNIPI++DLG+ +RRAF++ P                    
Sbjct: 657 SYNQAVTATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACAPVDHTHEKPI 716

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+SADYSQ+ELR++AH+++   +   F +  DIH   AA++F V  E+V+P MR  A
Sbjct: 717 GAVLLSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKA 776

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT NF I YGI+P+ L+ +L IP  EAA+ IK YF  F  I  ++ +      + GY ET
Sbjct: 777 KTANFGINYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTET 836

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
            FGRR     + + + + R   ER AINAPIQG+AADI + AMI V + L   +L + ++
Sbjct: 837 AFGRRRQLRNLRTARGAQRGNAERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLV 896

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           LQ+HDELV  V  +E+   + ++  +ME A  P+ +  VPL V I    +W E +
Sbjct: 897 LQVHDELVLNVYLDELERVTALVREAMECAW-PECS--VPLVVEIGTGKDWLEAH 948


>gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
 gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
          Length = 910

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 318/993 (32%), Positives = 506/993 (50%), Gaps = 108/993 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +++ L L+DG S + RAFY  P L+    G   NA+ GF N+L+K ++  + +    H
Sbjct: 1   MAEQSKLLLIDGHSILNRAFYGLPDLTNSK-GQHTNAVYGFLNILFKTMEEEKPD----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A TFR+ ++ DYK  R  +   L  Q+P+++    A GI  +  +G EADD+
Sbjct: 56  LTVAFDLSAPTFRHRMFADYKGTRKPMAAELREQVPMIKEMLAAMGICLVTKEGLEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWG 173
           + T + I E  G  VTI+S D+DL+QL +       P T    T + E    + V + + 
Sbjct: 116 LGTMSKIGEAAGMDVTILSGDRDLLQLATDKVKIMIPKTKKGGT-ETESYYAKDVRETYQ 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + + ++AL GD+ DNIPG+PGIG KTA  ++  YG++E    +A  +K  +   NI
Sbjct: 175 VSPTEFIDVKALWGDTADNIPGVPGIGEKTAINIIAAYGSIEAAHEHAEDLKPPRAARNI 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +++ + ARLS+ L  +     I   L    + +              FT    R+     
Sbjct: 235 VDFWDQARLSKTLATIDVHAKIDYDLAAAQIGNI-------------FTDDAYRL----- 276

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           C     + ++L  +         +  +DR+    TS+FS L+ +T+           F E
Sbjct: 277 CKDWGFKNILLRFD---------KESVDREEKDLTSRFSHLTSRTA-----------FEE 316

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            +++  Q                 + W      IG+  F  + D   A   +  A+AIS 
Sbjct: 317 MIERAGQSQ---------------ETW------IGAGLF--LKDHSAARAGQIRALAISF 353

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTG---KNTLTKEILSYLKKFFENEHFLKIGHNIK 470
             +        E   + L    + D +G   ++T  +  L  L    +N  FL +     
Sbjct: 354 EGKAFFAEADTEARQLSLFGSEADDGSGDLIQSTDLRRGLQALADAGKNLAFLDL----- 408

Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKS 526
             K  L +   S RG   D+ + +Y+LD   SS+    IA+  L+ +     E    +K+
Sbjct: 409 --KEALSQLSFSDRGRSFDLQVAAYLLDPLSSSYPTEDIARDQLALSIPSYSEFFGKKKA 466

Query: 527 SIPIDKI-SDSQVQEHAIENSNVILQLWLLLR-PKLIVEKLLH-----VYERLDKPMIDV 579
               D+I  D +  EH +  +    Q ++  R P+ ++++L       +YE ++ P++  
Sbjct: 467 ----DQIWEDPEEVEHRMHYA--CYQAYVASRAPQKLLKRLEEQGMRALYEEVELPLVYT 520

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +  ME  GI ++++ LK    ++   +  LEE IY  +GE FN++SPKQLG++LF +L  
Sbjct: 521 LYDMETAGIAVEKEALKSYGDQLVGRINELEEGIYREAGETFNINSPKQLGEVLFGQLGL 580

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KTKTG + T A  L+ +   +  I++++LE+RQL+K+KSTYAD L   I     R+
Sbjct: 581 PGARKTKTG-YSTAADVLDPLAV-NYQIVRDVLEFRQLTKLKSTYADGLAKVIAD-DGRI 637

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           H+ +    T TGRL+S EPNLQNIPI+ +LG++IRR F +      + +DYSQIELR+LA
Sbjct: 638 HSSFQQTVTATGRLSSTEPNLQNIPIRMELGKEIRRVFPAMEGCVFVDSDYSQIELRVLA 697

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + +    DIHR  A+ +F    E+V+ Q R +AK +NF I+YGIS F LA 
Sbjct: 698 HLSQDPKLIEAYRQGKDIHRATASLVFHTPFEEVTDQQRSNAKAVNFGIVYGISAFGLAK 757

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA +YI  YF  +P +H+Y++    F R+ GY  T+FGRR    E+ +     
Sbjct: 758 DLGISREEAQEYIDGYFAAYPRLHDYLDGLVEFARKEGYAVTLFGRRRPVPELKNSNFMQ 817

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER A+NAP+QG+AADI + AM+ VH  L    L ++++L +HDEL+ E  E+E   
Sbjct: 818 RQFGERVAMNAPVQGTAADIIKIAMVRVHDRLAKEGLRSRLILTVHDELLVETFEQEEQE 877

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +I+   M  A      L V L+++     NW
Sbjct: 878 VREILDQEMRGAA----QLSVELEIDTHSGRNW 906


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 336/1017 (33%), Positives = 529/1017 (52%), Gaps = 110/1017 (10%)

Query: 7   LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             L+DG S  YRA++A       PL  R   G+P +   GF N L ++++  + + +   
Sbjct: 9   FLLIDGHSLAYRAYHAFAHAKAGPL--RTSTGIPTSVCFGFLNSLLQVIETQQPQGVV-- 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD    +FR+ +YP+YK +R + PE  +P L  ++    A  +  + + G+EADDI
Sbjct: 65  --IAFDRKEPSFRHLLYPNYKGDRKETPEEFIPDLENLKRLLNALNLQMVTVAGYEADDI 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKE------EKIDIEHV 168
           + T    A    + V I++ D+DL QLV P    + LY   + +K        ++D + V
Sbjct: 123 LGTLAEKAASSNYRVKIVTGDRDLFQLVDPEKQISVLYVEKNALKGIAAHGYTEVDPKVV 182

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +K G+ P ++V  +AL GD  D+IPGI GIG KTAA LL+EYG+LE I  N  +IK   
Sbjct: 183 EEKLGVKPNQVVDFKALCGDKSDSIPGILGIGEKTAATLLKEYGSLEGIYQNLDQIKGAV 242

Query: 229 RRENILEYA-ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           +++  LE   E A+ SR L  L  DVP  I LE   L+  +   +   L+ LE  K +  
Sbjct: 243 KKK--LEAGKEDAQQSRVLAQLALDVPTDIDLEKCQLKGFDINTIRPLLEKLELKKFLQN 300

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +    +     + P   DIN  +   +   T +  +  IK  + +    + S I     P
Sbjct: 301 INRLQEKFGGTVHPTT-DINEPQQLSL-FATPVSEN--IKEVEKTEPVAEVSSIE----P 352

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           Q   ++  +KL+          K++N  +     Q  +T    ++   T ++D   +  +
Sbjct: 353 Q--IIDTSEKLA----------KLINILE-----QHTDTHQPVTWDTETTSLDPIEATLV 395

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            I      Q  D +      +I L+ HT     G+     E+L+ L+   E++ + K   
Sbjct: 396 GIGCCWGHQSTDVA------YIPLN-HTE----GEQLPQTEVLAALRSILESDQYPKAFQ 444

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           N K+D++VL   GI + G   D ML SYVL     SH ++ +  ++L   +   L  +  
Sbjct: 445 NTKFDRIVLLHQGIQLAGVVFDTMLASYVLRP-EDSHKLSDLCHRYLENIKS--LNYKDL 501

Query: 527 SIP----IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHVYERLDKPMI 577
            IP    I  +  S+V  +   ++    +L     PKL+ E      L ++  ++++P+ 
Sbjct: 502 EIPKTQTIANLDISRVAHYCGMDAYATFKLV----PKLLAELEKAPDLYNLLIKVEQPLE 557

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+++ME TG++ID   LK  S ++ ++L   E+  Y+ +GE FNL SPKQL  ILF KL
Sbjct: 558 PVLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYEAAGESFNLGSPKQLSYILFDKL 617

Query: 638 KFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K       K KTG + T    LE++  G++ II  ILE R L+K+KSTY D+LP  ++ +
Sbjct: 618 KLSKSKSRKIKTG-YSTDHATLEKLQ-GEDRIIDYILEHRTLAKLKSTYVDALPALVHPK 675

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT ++   T TGRL+S  PNLQNIPIKT+  ++IR+AFI      L+SADYSQIEL
Sbjct: 676 TGRVHTDFNQTVTTTGRLSSSNPNLQNIPIKTEFSRQIRQAFIPEEGWLLVSADYSQIEL 735

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RILAH+ +   L + ++N  D+HR+ A  +F  +   ++ + R   KTINF +IYG+   
Sbjct: 736 RILAHLTQEPLLVEAYQNYQDVHRVTAQLLF--DKANITSEERSIGKTINFGVIYGMGAQ 793

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
           R A    +   E  ++I++Y  ++  + EY+E+ K      G+V TI GRR +++  +  
Sbjct: 794 RFARAFGLSVQEGKEFIEKYHQKYARVFEYLERVKKEAIAKGFVTTILGRRRYFEFFDDK 853

Query: 876 KSSIR--------------NINE----RAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
            + +R              N ++    RAA NAPIQGS+ADI + AM+ + + L+ ++  
Sbjct: 854 LNRLRGEKPENLDLKKLELNFSDAQLLRAAANAPIQGSSADIIKIAMVQLQEILQQYQ-- 911

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++LLQ+HDELVFEVP  E       I ++ME A    +NL VPL V I+   NW E
Sbjct: 912 ARLLLQVHDELVFEVPPHEWEELEVKIKNTMENA----VNLTVPLVVEIRSGKNWME 964


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 319/980 (32%), Positives = 499/980 (50%), Gaps = 78/980 (7%)

Query: 7   LFLVDGSSFIYR---AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             ++D    +YR    F   PLL+ K  G  V++I GF    + L+        A + A+
Sbjct: 5   FLIIDAFGILYRYHFIFLKRPLLNSK--GQNVSSINGFMRTYFSLINTYP----AEYVAI 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D    TFRNEIY +YK NR  +P+ L  Q+P++     A GI  I +  +EADDI+ T
Sbjct: 59  ALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDIVGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEKMV 180
                +KE     I S DKD++QLV     +  + K+ ++   D + V +K G+ P +++
Sbjct: 119 IAERNKKENIKTIIYSPDKDILQLVDDDVKVVASNKDNELMEYDAQAVKEKRGVYPNQII 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L +L GD+ DNIPG+ G+G KTA  LL+EY +L+ I  N   IK  K +E +LE  + A
Sbjct: 179 DLLSLMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKG-KIQEKLLESKDMA 237

Query: 241 RLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            +S KL  +  ++    +    +     N   +   L  LE  ++ ++           I
Sbjct: 238 YMSYKLATIERNIEGFNLDYNEIASSKINIDEVNKILDELELKQIRDK-----------I 286

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
              +   +  E+K      +I++D   KT +   LS +                      
Sbjct: 287 NSYIYGSSKKEDKVKISNDKINKDNDSKTEEAPILSAKD--------------------- 325

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               N  SY  I N  +++  ++ + +         T  +D F    I I+ +       
Sbjct: 326 ----NKSSYYLIENETELENLLKDINSKKLVCIDFETTGLDTFKDTIIGISFAIKSN--- 378

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                E  ++DLS  T  D      L  + L       E E    IGHN+KY+  ++   
Sbjct: 379 -----EAFYLDLSGRTKIDKDKCMNLVFDTL-------EKEDIKVIGHNLKYEYKMMRAI 426

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
           G S+   + D M+ +Y+++  R  +++  +A  +LSY      ++  + K ++    + D
Sbjct: 427 GKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYADLTDNAKKTLLDAPLKD 486

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             V E+A E+++V  + +    P L    L  ++  ++ P++ V++ ME  G+ I  + +
Sbjct: 487 --VVEYACEDADVTFRFYECFAPLLKTHNLEDLFFNIEMPLVSVLADMEFDGVYISSERM 544

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K +S E S  L   +E IY  +GE+FNL SPKQL  ILF K+  P   KTKTG + T  +
Sbjct: 545 KALSDEYSSLLEKTKEKIYKEAGEEFNLQSPKQLEYILFDKMGIPPTKKTKTG-FSTDEE 603

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L ++      I + +L +R+ +K+K+TY D  P  IN++T R+H  ++   T TGRL+S
Sbjct: 604 VLTEL-SQKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSS 662

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIP++ + G++IR  FI      LI+ADYSQIELR+LAH +    L + F+N+ 
Sbjct: 663 SEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFKNND 722

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  A +I+ V+ E V+  MR  AK INFSIIYG + F L+ +L I R EA D+IK Y
Sbjct: 723 DIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGY 782

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAPIQG 894
           F  +  +  + E+    VR  G+V T+ GR R     INS  +  RN  ER A+N  IQG
Sbjct: 783 FSTYSRVKPFCEEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + AM+++HK  ++H    K+++Q+HDELV EV E E   A  I+   ME +   
Sbjct: 843 SAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIMEHS--- 899

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            +   VP+ V+I   N+W E
Sbjct: 900 -VKANVPIIVDIHKGNSWGE 918


>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
 gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
          Length = 903

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/614 (41%), Positives = 379/614 (61%), Gaps = 22/614 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  + + +  + WV +LE     +F + T+ +D   ++ + ++ +            E 
Sbjct: 304 AYETVFSEESFENWVARLEKAELFAFDLETNNLDYIEAEIVGLSFAIQPH--------EA 355

Query: 427 IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
           ++I L     +D+T    L +E +L+ LK   E+    K+G N+K+D  VL  YGI ++G
Sbjct: 356 MYIPLG---HEDATAPPQLPREQVLARLKPLLEDPRHGKVGQNLKFDCNVLANYGIELQG 412

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEILKSRKS-SIPIDKISDSQVQEH 541
              D ML SYVLDS  + H++ S+A K+L  T    E++  + +  +P ++++  +   +
Sbjct: 413 IRHDSMLESYVLDSTATRHNMDSLALKYLQRTTITYEMVAGKGAKQLPFNQVTIEKAAPY 472

Query: 542 AIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ LQL     P+L  E+ L  +Y+ L+ P+I V+S+ME  G+Q++ + LK  S 
Sbjct: 473 AAEDADISLQLHHCFWPRLQQEEGLRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSD 532

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E++  L  LE+  ++L+GE FNL+SPKQ+  IL+ KLK P   KT TGQ  T    L+++
Sbjct: 533 ELAARLKRLEQEAFELAGESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQEL 592

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ + +LE+R LSK+KSTY D LP  +N  T RVHT Y  A T TGRL+S +PNL
Sbjct: 593 AL-DYPLPQLLLEYRTLSKLKSTYTDRLPLQVNSHTGRVHTSYHQAVTATGRLSSSDPNL 651

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI++  G++IR+AFI+PP  +L++ADYSQIELRI+AH+++   L   FE   DIH+ 
Sbjct: 652 QNIPIRSTEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQR 711

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A EIF   +E V+P+ RR AK INF +IYG+S   L  QL I R+ A  YI+RYF R+P
Sbjct: 712 TATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAHGLGRQLGINRTAAQHYIERYFQRYP 771

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+E      RQ GYVET+FGRR++  EI+S ++  RN  ER AINAP+QGSAADI 
Sbjct: 772 GVKAYMENICQQARQKGYVETLFGRRLYLPEIHSRQTQRRNQAERTAINAPMQGSAADII 831

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +RAMI   + L++ K   +M++Q+HDELVFEV E+++    + I  +M  A      L+V
Sbjct: 832 KRAMIHADRWLQEQKANARMIMQVHDELVFEVAEDKLEATIRAIRENMAAAA----QLKV 887

Query: 961 PLKVNIKVSNNWQE 974
           PL V I    NW E
Sbjct: 888 PLIVEIGSGTNWDE 901



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 111/275 (40%), Positives = 159/275 (57%), Gaps = 6/275 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+++RAF+A P L+    G P  AI G  NML KLL   + + IA    V+FD
Sbjct: 9   LILIDGSSYLFRAFHALPSLTTS-KGQPTGAIYGVINMLRKLLDEYQPQYIA----VVFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++  YK +RP +PE L  Q+  +    +A G+P + ++G EADD+I T   
Sbjct: 64  AKGKTFRHELFEQYKDHRPPMPEELACQIQPLHDLIRALGLPLLCVKGVEADDVIGTLAR 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +     I S DKDL QLV+P   L +T+   K+D   V  K+ + PE++V   AL 
Sbjct: 124 QATAQRLETLISSGDKDLAQLVNPHVSLVNTMNLSKLDPAGVKAKFNVSPEQIVDYLALV 183

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DNIPGIPGIG KTAA LL +Y +L+ I+  AS IK  K  E++  +     L+++L
Sbjct: 184 GDTVDNIPGIPGIGPKTAAKLLCQYHSLDQIMAYASEIK-GKMGESLRSHLTQLPLAKEL 242

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
             +R D+ + +  + L     N P L     ALEF
Sbjct: 243 ATVRQDLLLDLGPKDLRCAPPNIPALRELYAALEF 277


>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
          Length = 977

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 335/1017 (32%), Positives = 526/1017 (51%), Gaps = 107/1017 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             LVDG S  +R+++A         R   G+P +   GF   L +++   + +++A    
Sbjct: 17  FILVDGHSLAFRSYFAFAKGRDGGLRTKTGIPTSVCFGFLKSLLEVMATQQPQAMA---- 72

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E    YKA+RP  PE  +P L  +    + F +P     G+EADD++ 
Sbjct: 73  IAFDLGLPTFRHEADDTYKADRPGTPEDFVPDLKNLHELLEGFNLPIYTAPGYEADDVLG 132

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE-----KIDIEHVIKK 171
           T    A  EG+ V I++ D+DL QLV P    T L    D +K       ++  E V ++
Sbjct: 133 TLAQKATAEGYKVKILTGDRDLFQLVDPEKEITVLNFSPDALKRSTNSITEVSTEQVKER 192

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P ++V  +AL GD  DNIPG+ GIG KTA  LL  YG+L+ +    + IK   +++
Sbjct: 193 LGVLPTQVVDFKALCGDKSDNIPGVRGIGEKTAVQLLSTYGSLDGVYKALNEIKGATQKK 252

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E  E A  S+ L  +  DVP+ + LE   L   +   LI  L+ LEFT+ +++    
Sbjct: 253 -LAEGKEDAAKSQFLAKIVVDVPLEVNLEDCKLVGFDESLLIPILEKLEFTRFLSQ---- 307

Query: 292 YDCDAANIEPVVLDINTTENK--GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
                         IN  + +  G  +ET     + I+T+ F    D  +   +E+T   
Sbjct: 308 --------------INDLQLRFGGTVVETPKTETSAIETTNFED--DDIAFYTAEET--- 348

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDT----MDAFHS 404
                 Q + Q    +    +I+NT+  + + VQ L+   +    +  DT    ++   +
Sbjct: 349 ------QAIQQNQPASPIQPRIINTEAKLIELVQILQQFTNPETPVAWDTETSALEPRDA 402

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
             + I      + D +++      I L+ HT     G+N     +L+ L+   E+  + K
Sbjct: 403 ALVGIGCCWGTETDASAY------IPLA-HTK----GENLNQDIVLAALRPILESADYPK 451

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
              N K+D+LV    GI++ G   D ML SYVL+   +SH++  + Q++L  T +  +  
Sbjct: 452 TFQNAKFDRLVFLVQGINLTGVVFDPMLASYVLNPD-TSHNLTDLTQRYLGLTIQNYVDL 510

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI----VEKLLHVYERLDKPMIDV 579
                 I  I+ S V  +         QL   LR +L     ++KLL     +++P+  V
Sbjct: 511 VPKGKTIADINISAVANYCCLQVYATFQLVAKLREELAKTPNLDKLLR---EVEQPLESV 567

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ +E TG++I+   L ++S ++  +L  L+E   +L+GEKFNL SPKQL  ILF KL  
Sbjct: 568 LATVEYTGVRINSAYLHELSQQLEIDLAKLQEQATELAGEKFNLGSPKQLSYILFEKLGL 627

Query: 640 PS--GAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
            +    K +TG + T A  LE++    D   +  I+E+R LSK+KSTY D+LP  +   T
Sbjct: 628 STKYSRKIQTG-YSTDAATLEKLQEVDDTGFVNAIIEYRTLSKLKSTYVDALPALVRPDT 686

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           QRVHT ++  +T TGRL+S  PNLQNIPI+T   ++IR+AF+      + +ADYSQIELR
Sbjct: 687 QRVHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMAAADYSQIELR 746

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH+++   L Q ++ + DIH + A  +F    E V+   RR AKTINF +IYG+   +
Sbjct: 747 ILAHLSQEPLLVQAYQQNEDIHTVTAKLVF--EKEDVNSDERRIAKTINFGVIYGMGSLK 804

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS-- 874
            +    I ++ A ++IKR+  R+  I  Y+E  K      GYVETI GRR ++D  N+  
Sbjct: 805 FSRSTGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGRRRYFDFTNNSL 864

Query: 875 -------PK----SSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
                  P+    S ++N+        R+A NAPIQGS+ADI + AM+ +H+ L+ ++  
Sbjct: 865 RKLKGSKPEDIDLSKLKNLGPYDAGLLRSAANAPIQGSSADIIKIAMVQIHEVLKKYQ-- 922

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++LLQ+HDELVFEVP +E       I   ME A    + L VPL V+++   NW E
Sbjct: 923 ARLLLQVHDELVFEVPPQEWAELQPQIKSVMENA----VKLSVPLVVDVRAGENWME 975


>gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 906

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 319/979 (32%), Positives = 512/979 (52%), Gaps = 89/979 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DGS+F++RA+++T   +    DG P  AI G  + + +L    +K+   +    IF
Sbjct: 5   LILMDGSAFLFRAYFSTLKQNLTNQDGFPTGAIFGVISAIKRL----QKQYPEAKIITIF 60

Query: 66  DYPAVTFRNEIYPDYKANR-PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D     FR++IYP YKA+R P   E+++   PL  +  +A G+  + +   EADD+IAT 
Sbjct: 61  DAKGKNFRHDIYPQYKAHRKPADSELVVQIEPLYEI-IRAMGLHFMCVPDVEADDVIATL 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           +  A +      I S DKDLMQLVS      D +K    D + VI+K G+ PE  + L A
Sbjct: 120 SCYANQNNIKTIIASGDKDLMQLVSANISQLD-MKGTVYDRQGVIEKMGVAPEIFLDLLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAETAR 241
           LTGDS DN+PG+P +G KTA   LQ Y ++  I  NA++IK K   K R N         
Sbjct: 179 LTGDSADNVPGVPSVGPKTAIKWLQTYNDIAGIKENATQIKGKVGEKLRNNFY----LLD 234

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LSR+LVML+ D  + +P        CN     S    ++   L  +   +      +  P
Sbjct: 235 LSRRLVMLKFD--VALP--------CNISDDESEQDVVKLADLYQQYGFSMWLKQLDNMP 284

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           ++      E +GI               Q + +++ TS +          ++ L+  SQ 
Sbjct: 285 ML------EQEGI---------------QATEVTESTSNM----------VDVLEDYSQ- 312

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                  T ++++      V +L+T  +  F + T ++D  ++  +          D  S
Sbjct: 313 -------TLVLDSDVFNAMVNRLKTSKTFVFDLETTSLDYMNATIVGWVFLV----DKNS 361

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F V      L+     D        K++L  LK   E+    K+G N+KYD  +L  Y I
Sbjct: 362 FYVPVGHDYLNAPKQLD-------FKDVLDQLKLILEDVSIGKVGQNLKYDAHILANYQI 414

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
            ++G  +D M+ SY L+S  + H+I  +++ +L++      +I    K  I  +++    
Sbjct: 415 DLQGISDDTMVKSYCLNSVATRHNIDDLSEYYLNHKTIHFDDIAGKGKKQITFNQVDLET 474

Query: 538 VQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E   V   L  +L  +++   KL+ +Y+ L+ P+I V+  ME  GI++D + L 
Sbjct: 475 AFPYACEYVIVTDLLNHVLDEEIVQYPKLVKLYQNLELPLIKVLLCMERNGIELDMNELS 534

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT--KLKFPSGAKTKTGQWKTTA 654
               +I + +  ++  +++L+G+ FNL SPKQ+  ILF    L      KT  G   T  
Sbjct: 535 TQQIDIVQQMKDIQAQVFELAGDIFNLESPKQIQQILFEPEGLGLTPLKKTPKGAPSTNE 594

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+ +   D+P++  IL +R L+K+ STY ++LP  I+  T R+HT Y  A T+TGRL+
Sbjct: 595 EALKLL---DHPLVDLILSYRTLTKLNSTYLEALPKQIDLNTHRLHTSYHQAVTVTGRLS 651

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPI++  G +IR AF++     +I+ADYSQIELRI+A +++   L   F + 
Sbjct: 652 SSNPNLQNIPIRSKQGARIRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLLDAFNHD 711

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H + A+ +F + I +V+ + RR +K INF +IYG+S F L  Q+ +   EA  YI  
Sbjct: 712 KDVHSVTASTMFNMPINEVTKKHRRRSKAINFGLIYGMSAFGLTKQIDVSIIEAKQYIDT 771

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+  Y++  K   +  GYVET+ GRR++  +INS    ++    R AINAP+QG
Sbjct: 772 YFDNYPGVLHYMDSIKESAKVWGYVETVMGRRLYLPQINSKNKILQQHALRTAINAPMQG 831

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           S+ADI +++M+ +H  + ++    +M++Q+HDELVFEV E +    +  I   M    L 
Sbjct: 832 SSADIIKKSMLDIHAWIGENNPDIRMIMQVHDELVFEVSESKADEFAHKIQGLMANVYL- 890

Query: 955 KINLRVPLKVNIKVSNNWQ 973
              L +PLKVN+ +  +WQ
Sbjct: 891 ---LDIPLKVNVGIGTSWQ 906


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 323/972 (33%), Positives = 508/972 (52%), Gaps = 97/972 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R++YA P L  K  G P   + GF N +  L+   R + I   FA+  D
Sbjct: 4   LTIIDTFGFFFRSYYALPPLKSKK-GFPTGLLTGFINFINSLVSEERSDYIV--FAL--D 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FR +I  +YKA RP+ PE L  QLP+     Q  G   +  +GFEADDIIA+   
Sbjct: 59  SEGPSFRAKIDSEYKAQRPEPPEELKMQLPVAIKWIQEMGFKTLAKEGFEADDIIASLVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            A+++G  V I+S DKDL QL+      LYD +K+E+ID E   KK+GIPP+ +    AL
Sbjct: 119 CAKEQGIKVKIVSHDKDLYQLIDDGKVVLYDPIKKEEIDEEKATKKFGIPPKLIKDYLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG KTA  LL+++G+LE I  +   +K ++ ++ ++E  E A LS+K
Sbjct: 179 VGDSADNIPGVKGIGPKTAVKLLEQFGSLEGIYEHLDEVKPERIKKLLIEGKEKAFLSKK 238

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  +V      +H  L+  + P                           +I P++  
Sbjct: 239 LVELDENV-----FDHCNLQQFHLP---------------------------SINPII-- 264

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                   IA E  ID D T    +  +   Q SK  S Q                 I  
Sbjct: 265 -------KIADEL-IDYDITAILRKIKAAPLQQSKKQSVQFE--------------AICL 302

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           D+Y K++        +Q +      +F   TD +D   +  +  + +  ++K   ++ V 
Sbjct: 303 DTYDKLIKA------IQSIPEGALVAFDTETDDLDTKKANLVGFSFAYSEEK---AYYVP 353

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484
                L V       G      + L  + K FE  H + IGHN+K+D  +L+RYGI   +
Sbjct: 354 IGHNYLGV-------GDQVGLDKALEAISKIFE--HTI-IGHNLKFDLSLLYRYGIDEKK 403

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D M++++++D G SS  + S+A+++L +      ++ K      ++S     ++A E
Sbjct: 404 DIVDTMILAWLVDPG-SSVGLESVAKRFLDHDMIAYKETVKKGEDFSQVSIDAACKYASE 462

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDK---PMIDVVSQMEITGIQIDQDLLKQVSAE 601
           ++ +   ++  L   L  +   H+ +   K   P ++ +  ME  GI+ID    +++ + 
Sbjct: 463 DAVITYMVYFKLLDALRKQGASHLIDEAKKVEFPFVNTLIHMEQAGIKIDIPFFEELKSS 522

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + K +  + + IY+ +G +FN++S KQL  ILF KLK P   KTK+G + T    L+ + 
Sbjct: 523 LEKRIDEITQKIYEYAGGEFNINSTKQLAAILFEKLKLPPLKKTKSG-YSTNETTLQALK 581

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNL 720
              +PII  +LE+R+L K+KSTY D L N+  +  + R++T +    T TGRLAS  PNL
Sbjct: 582 -DKHPIIPLLLEYRELYKLKSTYIDPLINYAKRDPKHRIYTSFIQTGTATGRLASKNPNL 640

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPIKT+LG+KIR  FI+   + LI  DYSQIELR+LAH +K   L + F+   DIH  
Sbjct: 641 QNIPIKTELGRKIRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQKGRDIHME 700

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++FG   ++ + + R  AK+INF +IYG+   +LA  L I   EA   I+ YF  FP
Sbjct: 701 TAIKLFG---KEHAKEKRNIAKSINFGLIYGMGSRKLAETLGISTKEAKAIIESYFASFP 757

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            +  Y+E  +NF + +GYVET+  RR ++D  ++  + +     R A N   QGSAAD+ 
Sbjct: 758 TVKSYLESVENFAKTHGYVETLLKRRRYFDFAHASGAQLAAYL-REATNTVFQGSAADLI 816

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM  +   +++ +L  K+LLQIHDEL+FEV E +    +Q +    ++       L V
Sbjct: 817 KMAMNKIKNVIDEKQLEAKILLQIHDELIFEVQENQ----AQELAEEFKQIMQTIHPLNV 872

Query: 961 PLKVNIKVSNNW 972
           P++ +++++ NW
Sbjct: 873 PIECSVQIARNW 884


>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
          Length = 612

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/622 (41%), Positives = 394/622 (63%), Gaps = 29/622 (4%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++ ++Y  I++ K +  W+++L+     +F   TD +D   S  I +           SF
Sbjct: 8   LSQENYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGL-----------SF 56

Query: 423 KV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            V   E  ++ L+ H   D+  +  L ++ +L+ LK   E++  LK+G N+K+D+ +L R
Sbjct: 57  AVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLAR 113

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           YGI +RG   D ML SYVLDS    HD+ S+A+++L++   T +EI    K+ +  ++I+
Sbjct: 114 YGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIA 173

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ+
Sbjct: 174 LEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQN 233

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T 
Sbjct: 234 ILVAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTN 293

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGRL
Sbjct: 294 EEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGRL 352

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F  
Sbjct: 353 SSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAA 412

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+ 
Sbjct: 413 GKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMD 472

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+Q
Sbjct: 473 LYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQ 532

Query: 894 GSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME++ 
Sbjct: 533 GTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQS- 591

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L VPLKV++ V  NW +
Sbjct: 592 ---MQLAVPLKVDVGVGYNWDQ 610


>gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
 gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
          Length = 978

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 332/1015 (32%), Positives = 515/1015 (50%), Gaps = 100/1015 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59
             LVDG S  YR+++A    ++  DG       +P +   GF   L +++   + +++A 
Sbjct: 15  FILVDGHSLAYRSYFA---FAKGRDGGLRTKAGIPTSICFGFVKCLLEVMATQQPQAMA- 70

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              + FD    TFR+E    YKA+R + PE  +P L  +      F IP     G+EADD
Sbjct: 71  ---IAFDLGEATFRHEADETYKADRKETPEDFIPDLANLHELLNGFNIPIFTAPGYEADD 127

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLV-----------SPTTCLYDTVKEEKIDIEHV 168
           ++ T        G+ V I++ D+DL QL+           SP      T    + + E V
Sbjct: 128 VLGTLAQRVTAAGYRVKILTGDRDLFQLIDSDKEITVLNFSPDAIKRSTNSITEFEAEQV 187

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +K G+ P +++  +AL GD  DNIPG+ GIG KTA  LL  YG+L+NI      IK   
Sbjct: 188 KEKMGVLPSQIIDFKALCGDKSDNIPGVKGIGEKTAVQLLNTYGSLDNIYAALDEIKGAT 247

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +++ +    E A  SR L  +  DVPI I LE   L+  +   L   L+ LEF   + ++
Sbjct: 248 QKK-LASGREDADKSRYLATIVLDVPIEINLEDCKLKGFDTSVLSPILEKLEFKSFLGKI 306

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                     +E    +    +   I  ++E+ RD       F S SD  +       PQ
Sbjct: 307 NDLQQRFGGKVE----EKQEAKTDVINPKSEL-RDDEDNDLWFFSASDTAA------VPQ 355

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDT----MDAFH 403
           +         S  PI      +I+NT+  + + V+ L+T  +    +  DT    ++   
Sbjct: 356 Q---------STSPIT----PRIINTEAKLTELVKLLQTFTTPDIPVAWDTETTALEPRD 402

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           +  + I      Q D      E  +I L        TG+N     +L  L+   E+  + 
Sbjct: 403 ADLVGIGCCWGMQPD------EVAYIPLG-----HKTGENLHKDLVLEGLRPILESADYP 451

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K   N K+D+LVL   GI++ G   D ML SY+L+   SSH++  + Q++L    K  L 
Sbjct: 452 KALQNAKFDRLVLKCQGINLAGVVFDPMLASYILNPD-SSHNLMDLGQRYLGLIAKSYLD 510

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVS 581
                  I  I    V ++   ++     L   LR +L  +  L  +   +++P+  V++
Sbjct: 511 LVPKGKTIADIDIPSVADYCGMDAYSTFGLVPKLREELDKIPTLSKLLVEVEQPLEAVLA 570

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           QME TG++I+   LK++S  +   L  L+E    ++GE FNL SPKQL  ILF KL   +
Sbjct: 571 QMEYTGVRINSAYLKELSQHLETELARLKEEATKIAGENFNLGSPKQLSQILFEKLGLST 630

Query: 642 --GAKTKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
               K +TG + T A  LE++   D +  ++ I+E+R LSK+KSTY D+LP  +   TQR
Sbjct: 631 KHSRKIQTG-FSTDAATLEKLQEDDKSGFVEAIIEYRTLSKLKSTYVDALPALVRPDTQR 689

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT ++ A+T TGRL+S  PNLQNIPI+T   ++IR+AF+      +++ADYSQIELRIL
Sbjct: 690 VHTDFNQAATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPEAGWLMVAADYSQIELRIL 749

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+++   L Q ++ + D+H +    +F    EK++ + R  AKTINF +IYG+   R +
Sbjct: 750 AHLSQEPILVQAYQQNEDVHTVTGRLVF--EKEKITSEERGIAKTINFGVIYGMGSLRFS 807

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN----- 873
               I ++ A ++IKR+  R+P +  Y+E+ K      GYVETI GRR ++D  N     
Sbjct: 808 RSTGIDKNIANEFIKRFNERYPKVFAYLEQVKKEAIALGYVETILGRRRYFDFTNNSLRR 867

Query: 874 ----SPK----SSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
               +P+    S ++N+        R+A NAPIQGS ADI + AM+ +H+ L++++   +
Sbjct: 868 LKGSNPEDIDLSKLKNLGPYDAGLLRSAANAPIQGSNADIIKIAMVRLHEVLKNYQ--AR 925

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LLQ+HDELVFE+P +E       I   ME A    + L VPL V  +V  NW +
Sbjct: 926 LLLQVHDELVFEIPPDEWEELQPQIKSVMENA----VQLSVPLLVEARVGENWMD 976


>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
 gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
          Length = 966

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 341/1026 (33%), Positives = 531/1026 (51%), Gaps = 128/1026 (12%)

Query: 7   LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG S  +RA++A       PL  R   G+P +   GF N L +++++ + + +   
Sbjct: 9   LILIDGHSLAFRAYHAFAHTKQGPL--RTSTGIPTSVCFGFLNSLLQVIESQQPQCVI-- 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD    +FR+++ P+YK +R + PE  +P L  ++L   A  +  + + G+EADDI
Sbjct: 65  --IAFDRKEPSFRHQLDPNYKGDRKETPEEFIPDLENLKLLLSALNLQIVTVAGYEADDI 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE------KIDIEHV 168
           + T    A +  + V I++ D+DL QLV      + LY   +  K        +++   V
Sbjct: 123 LGTLALKASQANYKVKIVTGDRDLFQLVDAQKKISVLYLEKNAFKASSPNGYTEVNPAEV 182

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +K G+ P ++V  +AL GD  D+IPGI GIG KTA  LL+EYG LE I  N   IK   
Sbjct: 183 EQKLGVKPNQVVDYKALCGDKSDSIPGILGIGEKTAVTLLKEYGTLEGIYQNLESIKGAL 242

Query: 229 RRENILEYA-ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           +++  LE   E A+ SR L  L  DVP+        L+      +   L+ LE  K I  
Sbjct: 243 KKK--LETGEENAKHSRILAQLALDVPVEFDFNTCQLKGFELETIRPLLEKLELKKFIQ- 299

Query: 288 VATTYDCDAANIEPVVLDINTTENK-GIAIETEIDRDTTIKTSQFS-SLSDQTSKINSEQ 345
                            +IN  + K G  +      + + + S F  S SD   ++N  +
Sbjct: 300 -----------------NINRLQEKFGGVVSLPSQSNESQQLSLFPVSGSDSIEQVNQTE 342

Query: 346 TPQKL-FLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFH 403
           +  KL F+E                +++NT + + Q V+ L+   + +  +  DT     
Sbjct: 343 SITKLNFIE---------------PQLINTSEKLTQLVKLLKQYTNPAQPVAWDT----- 382

Query: 404 SKPIAIAISTLDQKDDTSFKV---------ETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
                   ++L+ KD T   +         E  +I L+ HT     G+    +E+LS L 
Sbjct: 383 ------ETTSLEPKDTTLVGIGCCWGEQPTEVAYIPLN-HTE----GEQLPQEEVLSALS 431

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513
              E+E++ K+  N K+D++VL   GI + G   D ML SYVL     SH ++ + +++L
Sbjct: 432 VILESENYPKVFQNTKFDRIVLLNKGIKLAGVVFDTMLASYVLRP-ELSHKLSDLCERYL 490

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHV 568
              +   L  R   IP  +       E       +      +L PKLI E      L  +
Sbjct: 491 ENIKA--LNYRDLEIPKTQTIAHLSLEKVAHYCGMDAYATFMLVPKLIAELKQAPDLYEL 548

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
             ++++P+  V+++ME TG+ ID   L Q+S ++ ++L  LE   Y+ +GE FNL SPKQ
Sbjct: 549 LLKVEQPLEPVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAYEAAGESFNLGSPKQ 608

Query: 629 LGDILFTKLKFP--SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           L +ILF KL        K KTG + T    LE++  GD+PII  ILE R L+K+KSTY D
Sbjct: 609 LSEILFEKLGLNKRKSRKLKTG-YSTDHATLEKLQ-GDHPIIDYILEHRTLAKLKSTYVD 666

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
           +LP  ++ +T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AFI+     L+
Sbjct: 667 ALPALVHPQTGRVHTDFNQAVTTTGRLSSSNPNLQNIPIRTEFSRQIRKAFITQDDWLLV 726

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           SADYSQIELRILAH+++   L + ++N  D+HR+ A  +F  + E ++ + R   KTINF
Sbjct: 727 SADYSQIELRILAHLSQEPVLLEAYQNYQDVHRVTAQLLF--DKEVITSEERSIGKTINF 784

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            +IYG+   R A  + +   E  D+I +Y  ++  + EY+E+ K      G+V TI GRR
Sbjct: 785 GVIYGMGAQRFARSMGLSFQEGKDFIDKYHQKYARVFEYLERVKKEAIAKGFVTTIKGRR 844

Query: 867 IHYDEINSPKSSIR------------NINE------RAAINAPIQGSAADITRRAMISVH 908
            +++  +   + +R            N+N       RAA NAPIQGS+ADI + AM+ +H
Sbjct: 845 RYFEFFDDKLNHLRGEKPENLDLDKLNLNYSDAQLLRAAANAPIQGSSADIIKIAMVQLH 904

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           + L+ ++   ++LLQ+HDELVFE+P +E       I  +ME A    + L VPL V+I+ 
Sbjct: 905 EILQHYQ--ARLLLQVHDELVFEIPPDEWEDLQVKIKDTMENA----VKLTVPLVVDIRS 958

Query: 969 SNNWQE 974
             NW E
Sbjct: 959 GKNWME 964


>gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
 gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
          Length = 908

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 334/978 (34%), Positives = 510/978 (52%), Gaps = 85/978 (8%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  +
Sbjct: 4   LYLIDALNIIFRNYHVMKNYPLLNTR--GENVNAFIGFFKTLFFII----KEKNPKHLII 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP+YKA R   P+ L+PQ+  ++       IP  EI+G+EADD++A+
Sbjct: 58  TFDSEIPTFRKQKYPNYKATRDAPPDDLIPQIGWIKEGLLKAKIPIFEIEGYEADDLLAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVC 181
           +   A K  +   IIS DKDL+Q +S    +         ++D E+VIKK+GI   ++  
Sbjct: 118 FAKKAAKNNYLTYIISPDKDLLQTMSEHIKILKIENNSFVEMDNEYVIKKFGINSFQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E +++  E A 
Sbjct: 178 YLAIVGDRSDNIPGIKGIGPKGAANLLREFKTLKGIYSNLELI-SKKHQEILIKEKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  LV L  D+ I   +E+  L++     LIS  +      LI     TY  D      
Sbjct: 237 LSYDLVSLEEDLKIP-EIENFSLKNF-SKELISLFEKHSAISLI----KTYKKD------ 284

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
               I   E + +A           + S F+               Q+   + L  L+  
Sbjct: 285 ----ILKQEEENVA-----------QKSLFT---------------QEPIADNLDTLNTI 314

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              N  Y  I   K++   ++ L+     S    T ++D + ++ I I+IS         
Sbjct: 315 DTENVKYHSITTKKELDNLIESLKKAKYISIDTETSSLDIYTARLIGISIS--------- 365

Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L   
Sbjct: 366 FKEFEGYYIPI------EAKGKIYIEKHYIIQKFNNLFESNPKI-IGQNYKFDYKILKNN 418

Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G S +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS    
Sbjct: 419 GFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMA 477

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             ++ E++++  +L+ +   KL  + L  +   ++ P  +V+ +ME  GI +D++ LK+ 
Sbjct: 478 TSYSSEDADITFRLFNIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEY 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656
             E+ + L  +E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K     
Sbjct: 538 GKELGQELELIENEIIKSIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKV---- 593

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +  G +  I+NI++ RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+
Sbjct: 594 LESL-IGQHESIENIIKHRQIAKLKSTYTDNLIELINHKTNRLHTSFIQTKTATGRITSI 652

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ D
Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKD 712

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF
Sbjct: 713 IHTETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYF 772

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSA
Sbjct: 773 DSYPKIKEFITNQINFVRNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSA 832

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V    +  K+ +K+LLQ+HDE++ E P +E     +I+   ME A     
Sbjct: 833 ADIMKIAMVRVFNEFKSKKMESKILLQVHDEMLIESPIKEKNEVEKILKIMMETAY---- 888

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L +PL+ NI+   +W E
Sbjct: 889 TLNLPLRANIETGKSWGE 906


>gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413]
 gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413]
          Length = 977

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 331/1017 (32%), Positives = 526/1017 (51%), Gaps = 107/1017 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             LVDG S  +R+++A         R   G+P +   GF   L +++   + +++A    
Sbjct: 17  FILVDGHSLAFRSYFAFAKGRDGGLRTKTGIPTSVCFGFLKSLLEVMATQQPQAMA---- 72

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E    YKA+RP  PE  +P L  +    + F +P     G+EADD++ 
Sbjct: 73  IAFDLGLPTFRHEADDTYKADRPGTPEDFVPDLKNLHELLEGFNLPIYTAPGYEADDVLG 132

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE-----KIDIEHVIKK 171
           T    A  EG+ V I++ D+DL QLV P    T L    D +K       ++  E V ++
Sbjct: 133 TLAQKATAEGYKVKILTGDRDLFQLVDPEKEITVLNFSPDALKRSTNSITEVSTEQVKER 192

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P ++V  +AL GD  DNIPG+ GIG KTA  LL  YG+L+ +    + IK   +++
Sbjct: 193 LGVLPTQVVDFKALCGDKSDNIPGVRGIGEKTAVQLLSTYGSLDGVYKALNEIKGATQKK 252

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E  E A  S+ L  +  DVP+ + LE   L   +   LI  L+ LEFT+ +++    
Sbjct: 253 -LAEGKEDAAKSQFLAKIVVDVPLEVNLEDCKLVGFDESLLIPILEKLEFTRFLSQ---- 307

Query: 292 YDCDAANIEPVVLDINTTENK--GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
                         IN  + +  G  +E E      I+T++F    D  +   +E+T   
Sbjct: 308 --------------INDLQRRFGGTVVEVEKTEVAAIETTKFED--DDIAFYTAEET--- 348

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDT----MDAFHS 404
                 Q + Q    +    +I+NT+  + + VQ L+   +    +  DT    ++   +
Sbjct: 349 ------QAIQQNQPASPIQPRIINTEAKLIELVQILQQFTNPETPVAWDTETSGLEPRDA 402

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
             + I      + D +++      I L+ HT     G+N     +L+ L+   E+  + K
Sbjct: 403 ALVGIGCCWGTEADASAY------IPLA-HTK----GENLSQDIVLTALRPILESADYPK 451

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
              N K+D+LV    GI++ G   D ML SYVL+   +SH++  + Q++L  T +  +  
Sbjct: 452 TFQNAKFDRLVFLVQGINLTGVVFDPMLASYVLNPD-TSHNLTDLTQRYLGLTIQNYVDL 510

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI----VEKLLHVYERLDKPMIDV 579
                 I  I+ S V  +         QL   LR +L     ++KLL     +++P+  V
Sbjct: 511 VPKGKTIADINISAVANYCCLQVYATFQLVAKLREELAKTPNLDKLLR---EVEQPLESV 567

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ +E TG++ID   L ++S ++  +L  L+E   +L+GEKFNL SPKQL  ILF KL  
Sbjct: 568 LATVEYTGVRIDSAYLHELSQQLEIDLAKLQEQATELAGEKFNLGSPKQLSYILFEKLGL 627

Query: 640 PS--GAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
            +    K +TG + T A  LE++    +   +  I E+R LSK+KSTY D+LP  +   T
Sbjct: 628 STKYSRKIQTG-YSTDAATLEKLQEVDETGFVNAITEYRTLSKLKSTYVDALPALVRPDT 686

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           QRVHT ++  +T TGRL+S  PNLQNIPI+T   ++IR+AF+      + +ADYSQIELR
Sbjct: 687 QRVHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPKSGWLMAAADYSQIELR 746

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH+++   L Q ++ + DIH + A  +F    + ++   RR AKTINF +IYG+   +
Sbjct: 747 ILAHLSQEPLLVQAYQQNEDIHTVTAKLVF--EKDDINSDERRIAKTINFGVIYGMGSLK 804

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD------ 870
            +    I ++ A ++IKR+  R+  I  Y+E  K      GYVETI GRR +++      
Sbjct: 805 FSRSTGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGRRRYFNFDSTSL 864

Query: 871 ---EINSPK----SSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
              + ++P+    S ++N+        R+A NAPIQGS+ADI + AM+ +H+ L+ ++  
Sbjct: 865 LNLKGSNPEDIDLSKLKNLGAKDAGLLRSAANAPIQGSSADIIKIAMVQIHEVLKKYQ-- 922

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++LLQ+HDELVFEVP +E       I   ME A    + L VPL V+++   NW E
Sbjct: 923 ARLLLQVHDELVFEVPPQEWAELQPQIKSVMENA----VKLSVPLVVDVRAGENWME 975


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 316/980 (32%), Positives = 500/980 (51%), Gaps = 78/980 (7%)

Query: 7   LFLVDGSSFIYR---AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             ++D    +YR    F   PLL+ K  G  V++I GF    + L+        A + A+
Sbjct: 5   FLIIDAFGILYRYHFIFLKRPLLNSK--GQNVSSINGFMRTYFSLINTYP----AEYVAI 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D    TFRNEIY +YK NR  +P+ L  Q+P++     A GI  I +  +EADDI+ T
Sbjct: 59  ALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDIVGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEKMV 180
                +KE     I S DKD++QLV     +  + K+ ++   D + V +K G+ P +++
Sbjct: 119 IAERNKKENIKTIIYSPDKDILQLVDDDVKVVASNKDNELMEYDAQAVKEKRGVYPNQII 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L +L GD+ DNIPG+ G+G KTA  LL+EY +L+ I  N   IK  K +E +LE  + A
Sbjct: 179 DLLSLMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKG-KIQEKLLESKDMA 237

Query: 241 RLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            +S KL  +  ++    +    +     N   +   L  LE  ++ ++           I
Sbjct: 238 YMSYKLATIERNIEGFNLDYNEIASSKINIDEVNKILDELELKQIRDK-----------I 286

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
              +   +  E+K      +I++D   KT +   LS +                      
Sbjct: 287 NSYIYGSSKKEDKVKISNDKINKDNDSKTEEAPILSAKD--------------------- 325

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               N  SY  I N  +++  ++ + +         T  +D F    I I+ +       
Sbjct: 326 ----NKSSYYLIENETELENLLKDINSKKLVCIDFETTGLDTFKDTIIGISFAIKSN--- 378

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                E  ++DLS  T     GK+     +   L+K    E    IGHN+KY+  ++   
Sbjct: 379 -----EAFYLDLSGRT---KIGKDKCMNLVFDTLEK----EDIKVIGHNLKYEYKMMKAI 426

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
           G S+   + D M+ +Y+++  R  +++  +A  +LSY      ++  + K ++    + D
Sbjct: 427 GKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSDLTDNAKKTLLDAPLKD 486

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             V E+A E+++V  + +    P L    L  ++  ++ P++ V++ ME  G+ I  + +
Sbjct: 487 --VVEYACEDADVTFRFYECFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSERM 544

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K +S E S  L   +E IY  +GE+FNL SPKQL  ILF K+  P   KTKTG + T  +
Sbjct: 545 KALSDEYSSLLEKTKEKIYAEAGEEFNLQSPKQLEYILFDKMGIPPTKKTKTG-FSTDEE 603

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L ++      I + +L +R+ +K+K+TY D  P  IN++T R+H  ++   T TGRL+S
Sbjct: 604 VLTEL-SQKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSS 662

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIP++ + G++IR  FI      LI+ADYSQIELR+LAH +    L + F+N+ 
Sbjct: 663 SEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNND 722

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  A +I+ V+ E V+  MR  AK INFSIIYG + F L+ +L I + EA D+IK Y
Sbjct: 723 DIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKKKEAEDFIKGY 782

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAPIQG 894
              +  +  + ++    VR  G+V T+ GR R     INS  +  RN  ER A+N  IQG
Sbjct: 783 SSTYSRVKPFCDEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + AM+++HK  ++H    K+++Q+HDELV EV E E   A  I+   ME +   
Sbjct: 843 SAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIMEHS--- 899

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            +   VP+ V+I   N+W E
Sbjct: 900 -VKANVPIIVDIHKGNSWGE 918


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 342/1020 (33%), Positives = 516/1020 (50%), Gaps = 110/1020 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L+DG S  +R +YA         R   G+P +   GF N L ++++  + +++A    
Sbjct: 6   LLLIDGHSLAFRCYYAFAKSRQGALRTSTGIPTSICFGFLNALVQVIERQKPDAVA---- 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD P  TFR+    +YKA R   P+   P    +     +  +  +   G+EADD++A
Sbjct: 62  IAFDRPEPTFRHTADENYKAQRKPAPDDFRPDFENLLDLLDSLNVSRVTAVGYEADDVLA 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKE------EKIDIEHVIKKWG 173
           T    A + G  V I++ D+DL QLV P    + LY   K       E+   E V  K G
Sbjct: 122 TLARQASEAGQQVKILTGDRDLFQLVDPDKKISILYLDTKGVKSGSYEEFTPELVEAKLG 181

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRE 231
           + PE++V  +AL GDS DN  G+ GIG KTA  L+ E+G+L+NI  N   IK   KKR E
Sbjct: 182 VKPEQVVDFKALAGDSSDNYKGVQGIGEKTAIKLIHEFGSLDNIYANLDNIKGATKKRLE 241

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                 + A   +KL  +  D P+ I L  L L   N  + I  L  LE  K I  +   
Sbjct: 242 TD---KDAAYHCQKLAKIAQDAPLDILLNELHLTGFNLEQAIGILTKLELKKFIQDIGRI 298

Query: 292 YDC-DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS-SLSDQTSKINSEQTPQK 349
                A  IE   L+   + N      T +D     + S F+ S  DQ    N  QTP  
Sbjct: 299 QQIFGAETIEIPTLESVQSNN------TIVDEAGNAQLSIFAPSDPDQ----NQAQTPPT 348

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT-MDAFHSKPI 407
             +  +Q L            I++T + + + + +L+T    +  +  DT       + +
Sbjct: 349 ATISPIQPL------------IIDTAEKLTELIDQLKTQTDVNHPVAWDTETTGLDPREV 396

Query: 408 -AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKI 465
             + I     +D  +      +I ++ H        N L K +I   LK   E E + K+
Sbjct: 397 DLVGIGCCWGRDPGNIA----YIPIAHHNG------NQLEKTQIFQALKPILETEKYPKV 446

Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEI 520
             N K+D+ +    GIS+ G   D ML SYVL      H++  ++ ++L    + + K++
Sbjct: 447 FQNAKFDRAIFAHQGISLAGVVFDTMLASYVLHP-EMKHNLTDLSLRYLGNIIAKSYKDL 505

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHVYERLDKP 575
             ++K +I   +IS       A E   + +    L+  KL VE      L  + E+++ P
Sbjct: 506 GLTKKQTIADLEIS------VAAEYCGLDVYTTYLVCQKLKVELKDYPDLEKLLEKVETP 559

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  V+  ME TGI+IDQD L+Q++ E+  +L  LE   Y+ + E+FNL+SPKQLG+ILF 
Sbjct: 560 LEPVLCAMENTGIRIDQDYLQQLAEELGADLTDLEIKAYNAADERFNLNSPKQLGEILFE 619

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL   +    KT    +T   + +   GD+PII  ILE+R L+K+KSTY D+LP  ++ +
Sbjct: 620 KLGLNTKKTRKTKTGYSTNHAVLEKLQGDHPIIDYILEYRTLAKLKSTYIDALPTLVSPK 679

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T R+HT ++   T TGRL+S  PNLQNIP++T+  Q+IRRAFI      L++ADYSQIEL
Sbjct: 680 TDRIHTDFNQTLTSTGRLSSSNPNLQNIPVRTEFSQRIRRAFIPKENWVLVAADYSQIEL 739

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM-----RRHAKTINFSIIY 810
           RIL H+++   L Q ++   D+HR+ A  IF    ++ SPQ      RR  K INF +IY
Sbjct: 740 RILTHLSQEPILLQAYQAGEDVHRVTAQMIF----DRDSPQAVTAAERRIGKIINFGVIY 795

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G+   R A +  + + E   +I RY  R+  + EY+E  K      GYV TI  RR ++D
Sbjct: 796 GMGAQRFAREAGVSKEEGRAFIDRYHERYAKVFEYLELVKKQAIAQGYVSTILQRRRNFD 855

Query: 871 EINSPKSSIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLE 912
            I++    ++  +                   RAA NAPIQGS+ADI + AMI +H+ L+
Sbjct: 856 FISNCLIELKGSDPKAIDLDSLDYAYNDAQLLRAAANAPIQGSSADIIKVAMIQIHELLK 915

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           D++   ++LLQ+HDELVFE+P EE       I  +ME+A    + L +PL V+I    NW
Sbjct: 916 DYQ--ARLLLQVHDELVFEMPPEEWEELGSKIKTTMEQA----VPLSIPLVVDIHCGKNW 969


>gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S]
 gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S]
          Length = 928

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/625 (38%), Positives = 369/625 (59%), Gaps = 32/625 (5%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           PI+   Y  +V  + + +W+  +   G  +    TD +D      + ++++         
Sbjct: 318 PIDRSLYETVVTEEALDRWIAAVHAEGLVAVDTETDMLDCVSCALVGVSLA--------- 368

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKE--------ILSYLKKFFENEHFLKIGHNIKYDK 473
                +  + + +      GK+   ++        +L+ LK   E++  LKIG N+KYD 
Sbjct: 369 -----VGPNAACYIPVGHGGKDMFAEKPDQLPLPLVLAKLKPLLEDDSVLKIGQNLKYDI 423

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSY---TRKEILKSRKSSI 528
            VL R+GI +  ++D ++MS+ LD+G+S   H +   A+  L++   + K++  + +S I
Sbjct: 424 TVLRRHGIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAARVHLNHVCISFKDVCGTGRSQI 483

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              ++   +  E+A E+++V L+LW L + ++  E    VYE +D+P++ V+++ME  GI
Sbjct: 484 SFAEVPLDKATEYAAEDADVTLRLWRLFKSRIANEGATRVYELVDRPLVGVIAKMEHEGI 543

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D++ L ++SAE +  + +LE  I+ L+G+ F + S +QLG ILF K+ +  G K K+G
Sbjct: 544 KVDREALSRLSAEFTAGIAALEGEIHALAGQPFAIGSTQQLGAILFDKMGYKGGRKGKSG 603

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T    LEQ+      I   +L+WRQLSK+KSTY D+L   INK + RVHT YSL+  
Sbjct: 604 AYSTDVTILEQLKAQGAEIAGKVLDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLSGA 663

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T++G++IR AF++ P   +++ADYSQIELR+ AH+A +  L 
Sbjct: 664 QTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALK 723

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F N  DIH   A ++FG    +V+   R  AKTINF+I+YGIS + LA +L I   EA
Sbjct: 724 EAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEA 779

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            D I RY+ RFPGI  YI  T    R  GY ET+FGR+  +  I +P    R   ERAAI
Sbjct: 780 QDMISRYYERFPGISLYITDTIEKARSRGYTETLFGRKTWFPRIKAPVQHERQGAERAAI 839

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAPIQG++ADI +RAM  +  +L    L   KMLLQ+HDELVFE+PE ++  A  +I   
Sbjct: 840 NAPIQGTSADIIKRAMARMGPALAAEGLHRVKMLLQVHDELVFELPEGDVEHAGAVIRRV 899

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           ME A  P + L VPL V I   ++W
Sbjct: 900 MEGAAEPIVKLSVPLGVEIGHGSSW 924



 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/282 (48%), Positives = 194/282 (68%), Gaps = 1/282 (0%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +NHL+LVDGS +I+RA++  P L+ +H G PV A+ G+  MLWKL     K    +H AV
Sbjct: 3   QNHLYLVDGSGYIFRAYHQLPPLTNRH-GQPVGAVYGYTTMLWKLADELGKAEGPTHLAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + D  + TFRN++Y  YKANRP  PE L+PQ P++R AT+AF +P IE  GFEADDIIA+
Sbjct: 62  VLDKGSHTFRNDMYDAYKANRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIAS 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           YT  A  +G+ VTI+S+DKDLMQL+ P   +YDT+K E+   ++V+ K+G+ PE++  + 
Sbjct: 122 YTKAAVAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMTKFGVRPEQLGDVL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS+DN+PG+PGIG KTAA L+ EYG LE  L  A R+K+ K +EN++E+A+ ARLS
Sbjct: 182 ALMGDSVDNVPGVPGIGPKTAAKLITEYGGLEAALEAAPRMKKSKMQENLIEHADMARLS 241

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           R+LV L   + +  PL+ L L+      L +FL+   F  L+
Sbjct: 242 RRLVALHDGMDLPEPLDDLTLKGIPLEPLQAFLEHHGFKSLL 283


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 344/1023 (33%), Positives = 535/1023 (52%), Gaps = 117/1023 (11%)

Query: 7   LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG S  +R++YA       PL  R   G+P +   GF N L +++++ + E    +
Sbjct: 10  LILIDGHSLAFRSYYAFAKARKGPL--RTSKGIPTSVCFGFLNSLMQVIESQKPE----Y 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+ FD    TFR+E   +YKA+R + PE  +  +  ++   +A  +  +   G+EADD+
Sbjct: 64  LAIAFDRSEPTFRHEADENYKADREETPEDFIIDMANLQELLEALNLTIVTFPGYEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE-----KIDIEHVI 169
           + T      + G+ V I+S D+DL QLV      + LY   + VK       + + E V 
Sbjct: 124 LGTLANQGSESGYQVKIVSGDRDLFQLVDEAKNISVLYLERNAVKGSSEGYTEFNSEAVE 183

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---Q 226
            K GI P ++V  +AL GD  D+IPGI GIG KTA  LL+EYG ++ +  N  +IK    
Sbjct: 184 AKLGIKPVQVVDYKALCGDKSDSIPGIDGIGEKTAVKLLKEYGTIQEVYNNLDKIKGTLN 243

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           KK ++ + E    A  S+ L  +  DVP+ I  ++  L+  N   L   L+ LE  K + 
Sbjct: 244 KKLKDGVKE----AEHSQYLAKIVVDVPVDIDFKNCQLKGFNLSILEPLLQKLELNKFLK 299

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           ++          ++PV  D  T++         +D        Q S   +Q    +S   
Sbjct: 300 QINHLQQKFGGEVKPV--DQATSQ--------PLDH-----PQQLSLFPEQNLPAHS--- 341

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNT-KDIQQWVQKLETIGSASFKIITDT----MDA 401
            + L ++ + ++S  PI      KI+ T  D+   + KLE      + +  DT    ++ 
Sbjct: 342 VEPLVIKTIPEVS--PIT----PKIITTLDDLNHLINKLEQYTDVEYPVAWDTETTSLEP 395

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENE 460
            +++ + I     ++  D ++          + T  +    N L KE +L  LK   E++
Sbjct: 396 RNAELVGIGCCWGEKSTDIAY----------IPTGHNKG--NQLKKEAVLQALKPILESD 443

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
            + K+  N K+D+L+ +  GI+++G   D +L SYVL     SH+++ +  ++LS    +
Sbjct: 444 RYPKVFQNTKFDRLIFYHQGINLKGVVFDTLLASYVLHP-EMSHNLSDLCYRYLSGITSQ 502

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--------IVEKLLHVYER 571
             K  + +IP  K   S   E       +      LL  KL         +EKLL     
Sbjct: 503 SYK--ELAIPKGKTIASLDIETVANYCGLDAYATFLLVSKLKQELKSFPSLEKLLL---E 557

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +++P+  V++ ME  GI+ID D L+Q+S ++ ++L  +E+  Y  +GE FNL SPKQLG+
Sbjct: 558 VEQPLEPVLAAMEDIGIRIDTDYLQQLSQQLEQDLHIIEQQAYQEAGEIFNLGSPKQLGE 617

Query: 632 ILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           ILF KL+       KTKTG + T    LE++  GD+PII +IL++R LSK+KSTY D+LP
Sbjct: 618 ILFEKLELNRKKSRKTKTG-YSTDHATLEKLQ-GDHPIIDHILDYRTLSKLKSTYVDALP 675

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
             +   TQRVHT ++   T TGRL+S  PNLQNIPI+T+  +KIR+AFI      L+SAD
Sbjct: 676 ALVRPDTQRVHTNFNQTVTATGRLSSSNPNLQNIPIRTEFSRKIRQAFIPQENWLLVSAD 735

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELRILAH+++   L + + N+ D+H + A  +F  + E ++PQ R   KTINF +I
Sbjct: 736 YSQIELRILAHLSQEVVLLEAYRNNQDVHSVTAKLLF--DKETITPQERNLGKTINFGVI 793

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+   R A +  +  +E   +I +Y  R+  + +Y+E+ K     +G+V TI GRR ++
Sbjct: 794 YGMGAQRFAREAGVSAAEGKTFINKYRQRYAKVFDYLERMKKEAIADGFVTTILGRRRYF 853

Query: 870 DEINSPKSSIR------------NINE------RAAINAPIQGSAADITRRAMISVHKSL 911
           + I      ++            NIN       RAA NAPIQGS+ADI + AMI + + L
Sbjct: 854 NFITESLQKLKGSDPEKINLEVLNINYADAQLLRAAANAPIQGSSADIIKIAMIKMQEIL 913

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
             ++   ++LLQ+HDELVFE+P  E       I  +ME A    + L VPL V I   NN
Sbjct: 914 SHYQ--ARLLLQVHDELVFEIPLNEWEELQTKIKETMENA----VTLTVPLVVEIHSGNN 967

Query: 972 WQE 974
           W E
Sbjct: 968 WME 970


>gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi]
 gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi]
          Length = 909

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 337/979 (34%), Positives = 506/979 (51%), Gaps = 86/979 (8%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  +
Sbjct: 4   LYLIDALNIIFRNYHVLKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLII 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP+YKA R   P  L+PQ+  ++       IP  EI G+EADDI+A+
Sbjct: 58  AFDSEMPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIDGYEADDILAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181
           +   AEK G+   IIS DKDL+Q +S    +        I++  E+VIKK+GI   ++  
Sbjct: 118 FAKKAEKNGYLTYIISPDKDLLQTMSEYIKILKIENNSFIEMNNEYVIKKFGINSFQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E +++  E A 
Sbjct: 178 YLAIVGDRSDNIPGIKGIGSKGAANLLREFKTLKGIYSNLELI-NKKHQEILIKEKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  LV L  ++ I   +E+  L++ N   +IS  +      LI     TY  D      
Sbjct: 237 LSYDLVSLEENLQIP-EIENFYLKNFN-EEIISLFEKHSAVALI----KTYKKDILK--- 287

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                   EN G                   SL +Q S   S           L  L+  
Sbjct: 288 -----KKEENLGQ-----------------KSLFEQESITKS-----------LNALNTI 314

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              N  Y  I   K++   ++ L+     S    T ++D + +K I I+IS         
Sbjct: 315 DTENVKYYSITTKKELDNLIEGLKQANYISIDTETSSLDTYTAKLIGISIS--------- 365

Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           FK  E  +I +      ++ GK  + K  I+      F++   + IG N K+D  +L   
Sbjct: 366 FKEFEGYYIPI------ETKGKIYIEKHYIIQKFNNLFKSNPKI-IGQNYKFDYKILKNN 418

Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G S +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS    
Sbjct: 419 GFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMA 477

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             ++ E++++  +L+ +   KL  ++L  +   ++ P  +V+ +ME  GI +D++ LK+ 
Sbjct: 478 TSYSCEDADITFRLFNIFTEKLKEDELYELMHEIEMPFNNVIIEMEENGIYLDKEYLKEY 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656
             E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K     
Sbjct: 538 GKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESL 597

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            EQ     +  I N+++ R+++K+KSTY D+L   IN +T R+HT +    T TGR+ S+
Sbjct: 598 REQ-----HESIGNLIKHRRIAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSI 652

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ D
Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDETLIKAFENNKD 712

Query: 777 IHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           IH   A+++F +   EK++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 713 IHIETASKLFKIEEKEKITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 772

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 773 FDSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSTIQGS 832

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD  + AMI V    ++ K+ +K+LLQ+HDE++ E P +E     +I+   ME A    
Sbjct: 833 AADYMKIAMIKVFNEFKNKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETAY--- 889

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 890 -TLNLPLRANIETGKSWGE 907


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 322/982 (32%), Positives = 513/982 (52%), Gaps = 76/982 (7%)

Query: 7   LFLVDGSSFIYR---AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             ++D    +YR    F   PLL+ K  G  V++I GF    + L+        A + A+
Sbjct: 5   FLIIDAFGILYRYHFIFLKRPLLNSK--GQNVSSINGFMRTYFSLINTYP----AEYTAI 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D    TFRNEIY +YK NR  +P+ L  Q+P++     A GI  I +  +EADDI+ T
Sbjct: 59  ALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDIVGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEKMV 180
                +KE     I S DKD++QLV     +  + K+ ++   D E V +K G+ P +++
Sbjct: 119 IAEKNKKENIKTIIYSPDKDILQLVCDDVRVVASNKDNELMEYDEETVKEKRGVYPNQII 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GD+ DNIPG+ G+G KTA  LL+EY +L+ I  N   IK K  +E ++E  + A
Sbjct: 179 DLLALMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKGK-VQEKLIESKDMA 237

Query: 241 RLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            +S KL  +  ++    +    +     N   +   L  LE  ++ +++ +     ++  
Sbjct: 238 YMSYKLATIEKNIKDFNLDYNEIAKNKINIEEVNKILDELELKQIRDKINSYIYGVSSKK 297

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  V  +N T++                    SS S++  +   E++P  +   +  K S
Sbjct: 298 EEKVKILNNTDD--------------------SSKSEENKEDKKEESP--ILSAKDNKAS 335

Query: 360 QYPINNDSYTK-IVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            Y I N++  K ++N  + ++ V    ET G          +D F    I I+ +     
Sbjct: 336 YYLIENETELKNLLNDINSKKLVCVDFETTG----------LDVFKDTIIGISFAIRSN- 384

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  E  ++D+S  T+ D   K+     +   L K    E    IGHN+KY+  ++ 
Sbjct: 385 -------EAFYLDVSGRTNID---KDKCIDMVFETLAK----EDIKVIGHNLKYEYKMMR 430

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
               S    + D M+ +Y+++  R  +++  +A  +LSY      +I  + K ++    +
Sbjct: 431 AINKSFGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSDITDNAKKTLLDVPL 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            D  V E+A E++++  + +    P L    L  ++  ++ P++ V++ ME  G+ I  +
Sbjct: 491 KD--VVEYACEDADITFRFYECFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSE 548

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            +K +S E S  L   ++ IY  +GE+FN+ SPKQL  ILF K+  P   KTKTG + T 
Sbjct: 549 KMKALSDEYSSLLEKTKKKIYAEAGEEFNIQSPKQLEYILFDKMGIPPTKKTKTG-FSTD 607

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L +++     I + +L +R+ +K+K+TY D  P  IN++T R+H  ++   T TGRL
Sbjct: 608 EEVLTELS-QKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRL 666

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP++ + G++IR  FI+     LI+ADYSQIELR+LAH +    L + F+N
Sbjct: 667 SSSEPNLQNIPVRGEEGREIRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKN 726

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIHR  A +I+ V+ E V+  MR  AK INFSIIYG + F L+ +L I R EA D+IK
Sbjct: 727 NDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIK 786

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAPI 892
            YF  +  +  + E+    VR  GYV T+ GR R     INS  +  RN  ER A+N  I
Sbjct: 787 GYFSTYSRVKPFCEEVVEEVRNKGYVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLI 846

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ + AM+++HK  ++H    K+++Q+HDELV EV E+E   A  I+   ME + 
Sbjct: 847 QGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEADKAMTIMKEIMEHS- 905

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              +   VP+ V+I   N+W E
Sbjct: 906 ---VKTNVPITVDIHKGNSWGE 924


>gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
 gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
          Length = 909

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 322/980 (32%), Positives = 510/980 (52%), Gaps = 89/980 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DGS+F++RA+++T   +    +G P  A+ G  N + K LQ   +E+      +IF
Sbjct: 5   LILMDGSAFLFRAYFSTLKQNLTNQNGFPTGAMFGVINAM-KSLQRKYQEA---RIIIIF 60

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR+ IYP YKANR  I   L+ Q+  +    QA GI  I +   EADD+IAT +
Sbjct: 61  DARGKNFRHNIYPQYKANRKPIDGGLVVQIEPLYEMIQAMGIHFICVSKVEADDVIATLS 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A +      I S DKDLMQLV  T      +K    D + VI+K G+ PEK++   AL
Sbjct: 121 CCANQNNIKTIIASGDKDLMQLVG-TNISQLNMKGVLHDRQSVIEKIGVAPEKILDFLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAETARL 242
           TGDS DNIPG+P +G KTA   LQ Y ++  I  NA +IK K   K R+N     +   L
Sbjct: 180 TGDSADNIPGVPSVGPKTAIKWLQIYSDILGIKENAMQIKGKVGEKLRDNF----DLLDL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S +LV L+ DV   +P    IL+D             E  K I+++A  Y          
Sbjct: 236 SYQLVKLKFDV--VLPCN--ILDD-------------EPVKNIDKLANLY---------- 268

Query: 303 VLDINTTENKGIAIE-TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                  +  G  +   ++D  + +K      +   T   NS        ++ L+  SQ 
Sbjct: 269 -------QQYGFFMWLKQLDNVSVLKQKSIQVIGTDTGVNNS--------VDILKGYSQI 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            + +     I NT      V +L+ + +  F +   ++D  ++  +      L  KD   
Sbjct: 314 LVLD---LDIFNT-----MVSRLKILKTFVFSLKATSLDYMNASIVGWVF--LIDKDSFY 363

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   +ID           K     ++L+ LK   E+    KIG N+KYD  +L  Y I
Sbjct: 364 VPVNHDYID---------APKQLNFNDVLNQLKPILEDVSISKIGQNLKYDAHILSNYKI 414

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
            ++G  +D+++ SY L+S  + H++  +++ +L+Y      +IL   K  +  ++++   
Sbjct: 415 DLQGISDDVIVKSYCLNSVATRHNMNDLSEYYLNYQTINFVDILGKGKKQVTFNQVNVEI 474

Query: 538 VQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +  EN  +   L  +L  ++    +L+ +Y+ L+ P+I V+  ME  G+++D ++L 
Sbjct: 475 ALLYVCENVIITSLLNHMLDEEIAQYPRLVKLYQNLELPLIKVLLCMERNGVELDVNILS 534

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK--LKFPSGAKTKTGQWKTTA 654
               +I++ +  ++  +++L+   FNL SPKQ+  ILF    L      KT  G   T  
Sbjct: 535 TQQLDITQQMEDIKNQVFELADNVFNLESPKQIQRILFESKGLGLIPLRKTPKGVPSTNE 594

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+ +   D+P++  IL +R L+K+ STY + LP  I+  T R+HT Y+   T TGRL+
Sbjct: 595 EALKLL---DHPVVDLILSYRTLAKLNSTYLEVLPRKIDLNTHRLHTSYNQVVTATGRLS 651

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPI ++ G  IR AFI+     +ISADYSQIELRI+  ++K   L + F N 
Sbjct: 652 SSNPNLQNIPIFSEQGSCIRGAFITGKGNVIISADYSQIELRIMTQLSKDQNLLEAFNND 711

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H   A+ +F + I++V+ + RR AK INF +IYG+S + LA Q+ + R++A  Y+  
Sbjct: 712 KDVHSETASTMFNIPIDEVTSEYRRRAKAINFGLIYGMSAYGLAKQIGVSRTKAKQYMDT 771

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +P +  Y++  K   +  GYVETI GRR++  +IN+    ++    R AINAP+QG
Sbjct: 772 YFDNYPSVLYYMDNIKEIAKVQGYVETIMGRRLYLPQINAKNKMLQQHALRTAINAPMQG 831

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           S+ADI +++M  V+  +       +M++Q+HDELVFEV   +    S+ I   M    L 
Sbjct: 832 SSADIIKKSMFDVYTWIGQDNPDIRMIMQVHDELVFEVSASKADEFSRKIQALMSNTYL- 890

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L +PLKV++ + N+W+E
Sbjct: 891 ---LDIPLKVDVGIGNSWKE 907


>gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a]
          Length = 908

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 332/979 (33%), Positives = 503/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPKHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDEIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T   L       ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTNGL-----DDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ        I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A    
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 889 -TLNLPLRANIETGKSWGE 906


>gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 1009

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 341/1044 (32%), Positives = 536/1044 (51%), Gaps = 129/1044 (12%)

Query: 9    LVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LVDG S  +R++YA         R   G+P +A  GF   L +++     E    + A+ 
Sbjct: 15   LVDGHSLAFRSYYAFAKSRDGGLRTSTGIPTSASFGFLKSLLEVMAAEEPE----YMAIA 70

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD    TFR+E    YKA+R + PE  +  L  ++     F +  +   G+EADD++ T 
Sbjct: 71   FDLGLPTFRHEADDTYKADRTETPEDFIIDLKNLQELLSYFHLSIVTAPGYEADDVLGTL 130

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------------DTVKEEKIDIEHVIKKW 172
               A   GF V I++ D+DL QLV+    +              T + ++   E VI+K 
Sbjct: 131  AQRASLAGFCVKILTGDQDLFQLVNTDANISVLRLGRDSFGRGGTGRGQEYGPEQVIEKL 190

Query: 173  GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            GI P+++V  +AL GD+ DNIPG+ GIG KTA  LL  Y +L+ I  +  ++K   R++ 
Sbjct: 191  GIRPDQVVDYKALCGDASDNIPGVRGIGEKTAVQLLTTYNSLDRIYASLDQVKGAVRKK- 249

Query: 233  ILEYAET-ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA-- 289
             LE  +T A  S+ L  +  DVP+ I LE   L   +   LI  L+ LEF   +N+V   
Sbjct: 250  -LEDGKTEAYHSQHLAKIICDVPLEIELEECKLAGFDEAALIPVLEKLEFKTFLNKVKQL 308

Query: 290  ---------TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS----D 336
                     +  +  +  IE V  D  TT      I+TEI  D   K +   SLS    D
Sbjct: 309  QKRFGGVEQSGEEASSRKIEEVDQDNRTT------IKTEISEDRVSKENSDRSLSNNEDD 362

Query: 337  QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT-KDIQQWVQKLETIGSASFKII 395
             +   N E T +       Q+ +  PI      +I++T + + + VQ L T   ++  + 
Sbjct: 363  ASWFWNLEDTREA------QQQAILPIK----PRIIHTPEQLTELVQLLRTFTDSATPVA 412

Query: 396  TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF----IDLSVHTSQDSTGKNTLTKEILS 451
             DT             + L+ +D     +   +     DL+   +   TG+N     +L 
Sbjct: 413  WDT-----------ETTALEPRDAELVGIGCCWGTGEADLAYIPTGHKTGQNLDKAIVLE 461

Query: 452  YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
             L+   E+ ++ K   N K+D+L+L   GI + G   D ML SYV+D    SH++ ++ +
Sbjct: 462  ALRPILEDNNYPKALQNAKFDRLILRCQGIKLAGVVFDTMLASYVIDP-EGSHNLTALCK 520

Query: 511  KWL------SYTRKEILKSRKS----SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            ++L      + + K+++   ++    +IPI       V  +   +     QL   LR KL
Sbjct: 521  EYLEDPKLTAKSYKDLVSKEQTIADLAIPI-------VANYCGMDVYTTFQLVSKLREKL 573

Query: 561  --------IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
                    +   L  +  ++++P+  V++QME  GI+I+ + L ++S E+   L  +E+ 
Sbjct: 574  EELDAEKPLTASLEQLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQELENKLQLIEQT 633

Query: 613  IYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
             Y+++GE+F+LSSPKQL  +LF  LK       + ++G + T A  LE++   D+ ++K 
Sbjct: 634  AYEVAGEEFSLSSPKQLSKLLFETLKLDIKKSRRIQSG-YSTDAAVLEKLQ-DDHEVVKT 691

Query: 671  ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
            ILE R LSK+KSTY D+LP  +   T RVHT ++ A+T TGRL+S  PNLQNIPI+T+  
Sbjct: 692  ILEHRTLSKLKSTYVDALPQLVRPDTGRVHTDFNQAATGTGRLSSSNPNLQNIPIRTEFS 751

Query: 731  QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            ++IR+AF+      ++SADYSQIELRILAH+ +   L + ++ + D+H + A  +F    
Sbjct: 752  RQIRKAFLPKEGWLMVSADYSQIELRILAHLTQEPVLVEAYKTNQDVHTVTAKLLF--EK 809

Query: 791  EKVSPQMRRHAKTINFSIIYGISPFRLATQLR-IPRSEAADYIKRYFHRFPGIHEYIEKT 849
            E V+P  RR  KTINF +IYG+   R A  +  +  ++A  +I+R+  R+  + EY+ + 
Sbjct: 810  ETVTPDERRLGKTINFGVIYGMGAQRFARSVEGVSPTQAKLFIERFNQRYSRVFEYLNRV 869

Query: 850  KNFVRQNGYVETIFGRRIHY----DEINSPKSS---------IRNINE------RAAINA 890
            K      GYV TI GRR ++    + +   K S         ++NI +      RAA NA
Sbjct: 870  KKDAIAQGYVSTILGRRRYFKFEGESVRKLKDSDVQDINLATLKNIGQNDAQLLRAAANA 929

Query: 891  PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            PIQGS+ADI + AM+ +H  L+D +   ++LLQ+HDELV EVP +E       I ++ME 
Sbjct: 930  PIQGSSADIIKVAMVKLHDILKDRQ--ARLLLQVHDELVLEVPPDEWEELQHKIKNTMEN 987

Query: 951  ACLPKINLRVPLKVNIKVSNNWQE 974
            A    + L VPL V+I    NW E
Sbjct: 988  A----VELSVPLVVDIHAGQNWME 1007


>gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
 gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
          Length = 953

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 327/1022 (31%), Positives = 512/1022 (50%), Gaps = 132/1022 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R++YA         R   G+P +   GF   L ++++  + +++A    
Sbjct: 8   LLLVDGHSLAFRSYYAFAKGRDGGLRTRTGIPTSVCFGFLKALLEVMEQQQPKALA---- 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E   +YKANR + PE        +    Q   +P +   G+EADD++ 
Sbjct: 64  IAFDLGGPTFRHEADENYKANRDEAPEDFKIDTDNLVALLQTLNLPILVEPGYEADDLLG 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---LY---------DTVKEEKIDIEHVIK 170
           T      + G+ V I+S D+DL QLV P      LY         +     +ID   VI 
Sbjct: 124 TVAQRGAEAGYRVRILSGDRDLFQLVDPEGAIRVLYLGNTFGRSANREAAREIDPAAVID 183

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K G+PPE+++  +AL GDS DNIPG+ GIG KTA  LLQ +G+L+ I  N   IK   R+
Sbjct: 184 KLGVPPEQVIDFKALCGDSSDNIPGVKGIGPKTAVDLLQAWGDLDRIYDNLEAIKPAVRK 243

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE---FTKLINR 287
           + +    E A  SRKL  + TD+P+ I  +H  L   +   ++ +L+ LE   F + ++R
Sbjct: 244 K-LESDREAAYHSRKLAQIVTDIPLAIDWDHYALTGFDEQEVLPWLEKLELQAFRRQVDR 302

Query: 288 VATTYDCDAANIEPVV---LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           +   +      +E +    LD  T E            +T  +  ++  L  Q     + 
Sbjct: 303 LQQLFGGQPPTVEALSDESLDFWTAE------------ETAAQQPRWPQLQPQIITTAAA 350

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIV----NTKDIQQWVQKLETIGSASFKIITDTMD 400
            T     LE+           DS   IV     T D+   + +L  IG A          
Sbjct: 351 LTDLVTLLEQ----------RDSPEAIVAWDTETTDLDPRLAQLVGIGCA---------- 390

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
            +  +P  +A   L  ++     ++T+                      L+ L+   E++
Sbjct: 391 -WGEEPDQLAYIPLGHEEGEQLPLQTV----------------------LTALRPILESD 427

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              K   N K+D+L+L   GI + G   D ML SY+L+     H + ++A +WL      
Sbjct: 428 RHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNPSLG-HSLDALADRWLK----- 481

Query: 520 ILKSRKSS--IPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLH-VYERL 572
            L++R  S  +P  K            +   + +V+ +L  LL+  +     L  + E +
Sbjct: 482 -LQTRSYSDLVPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETV 540

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+  V+++ME  GI+ID+  L ++S  +   L  LE   + L+G++FNL SPKQL ++
Sbjct: 541 ELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGDRFNLGSPKQLSEL 600

Query: 633 LFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           LF KL        KTKTG + T A  LE++  GD+PII  ILE R L+K+KSTY D+LP+
Sbjct: 601 LFEKLGLNVKKSRKTKTG-YSTDAAVLEKLQ-GDHPIIDLILEHRTLAKLKSTYVDALPS 658

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            +     R+HT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+      L +ADY
Sbjct: 659 LVAA-DGRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFLPREGWLLAAADY 717

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELRILAH+++   L + +    D+HR+ A+ +F  + E+++ + RR  K INF +IY
Sbjct: 718 SQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIY 775

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G+   R A +      EA  +I R++ R+P +  Y++  +      GYVET+ GRR ++D
Sbjct: 776 GMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGRRRYFD 835

Query: 871 EINSPKSSIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLE 912
             ++    +R  +                   RAA NAPIQGS+ADI + AM+ +   L+
Sbjct: 836 FEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAPIQGSSADIIKVAMVQLQALLQ 895

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++   +MLLQ+HDELV E+P EE  + +  I  +ME+A    + L VPL V +   +NW
Sbjct: 896 SYQ--ARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQA----VQLTVPLAVELHAGHNW 949

Query: 973 QE 974
            E
Sbjct: 950 ME 951


>gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone
           ASNC3046]
          Length = 976

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 322/1022 (31%), Positives = 529/1022 (51%), Gaps = 114/1022 (11%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K DG P +   GF   L    +N   E +    
Sbjct: 13  LLLVDGHSLAFRSFYAFSKGIDGGLTTK-DGFPTSVTYGFLKSLLDNCKNISPEGVC--- 68

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEADDI 120
            + FD    TFR+E+ P+YKANR   P++    +  + +   ++  +P  +  GFEADD+
Sbjct: 69  -ITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGFEADDL 127

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHVIK 170
           + T    A  +G+ V I+S D+DL QLV     +Y           +     ++   V +
Sbjct: 128 LGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGVKE 187

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K G+ PE++V L+ALTGD+ DNIPGI G+G KTA  LL+E   L+ I     +I+Q   +
Sbjct: 188 KLGVAPERVVDLKALTGDNSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKIQQNNDK 247

Query: 231 -----------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
                      E +      A LSR L  + T+VP+ +      L++ N   L   LK L
Sbjct: 248 KYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSESLKKL 306

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
           E + L+ ++                  N+T +KG       D++   K            
Sbjct: 307 ELSTLLRQIDI---------------FNSTFSKG-----GFDKNNVAK------------ 334

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKIITDT 398
               E+ P+      L+  S+  I   + T + + + + + +Q+L+      S    T++
Sbjct: 335 --EEEKAPKVAGNNELEN-SENKIPKINVTVVNDFELLDKLIQRLDKTNQIVSLDTETNS 391

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           ++  +++ + I +   ++ DD        +I L  H ++  T      +++ S L+ + E
Sbjct: 392 LNPINAELVGIGLCLGEENDDL------FYIPLG-HQTKKGTSNQLSIEDVFSKLRNWIE 444

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           +    K   N K+D+ +   +G+ ++G   D +L  Y+L++ +  H ++ I+ +   +  
Sbjct: 445 DPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLNN-QEKHGLSEISFRLFGFKP 503

Query: 518 ---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVYERL 572
              KE +   K    +D I ++ +  +   +  +  ++  + +     EK  L+ ++E +
Sbjct: 504 PLFKETVGKNKDFSFVD-IDEASI--YCGYDVFLTFKIVKIFKESFSKEKDELIKLFEEI 560

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+L+GE FNLSSPKQLG+I
Sbjct: 561 ELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAGENFNLSSPKQLGEI 620

Query: 633 LFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           LF KL        KTKTG W T A  LE++   ++ II+++++ R LSK+ STY D+LPN
Sbjct: 621 LFDKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQHLIKHRTLSKLLSTYIDALPN 678

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SADY
Sbjct: 679 LINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADY 738

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELRILAH+A    L   F  + DIH + A  IF    E++S + RR  KTINF +IY
Sbjct: 739 SQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSEERRVGKTINFGVIY 796

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY- 869
           G+   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+  + 
Sbjct: 797 GMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFK 856

Query: 870 -----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
                            D  ++ ++ +   + RAA NAPIQGS+ADI + AM+ ++K   
Sbjct: 857 FDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFI 916

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +  +  KMLLQ+HDEL+FEV  + +   ++++  +ME      + L VPL V+I + +NW
Sbjct: 917 EMNIPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMEDC----VKLNVPLLVDIGIGDNW 972

Query: 973 QE 974
            E
Sbjct: 973 ME 974


>gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
 gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
          Length = 908

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 331/979 (33%), Positives = 504/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +        I++  E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMGNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAITLI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----NLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGCYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ     +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQ-----HESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A    
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 889 -TLNLPLRANIETGKSWGE 906


>gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116]
 gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116]
          Length = 907

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 333/978 (34%), Positives = 508/978 (51%), Gaps = 86/978 (8%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  +
Sbjct: 4   LYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLII 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP+YKA R   P  L+PQ+  ++       IP  EI+G+EADD++A+
Sbjct: 58  AFDSEIPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIEGYEADDLLAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181
           +   A K  +   IIS DKDL+Q +S    +        I++  E+VIKK+GI   ++  
Sbjct: 118 FAKKAVKNNYLTYIISPDKDLLQTMSEHIKILKIENNSFIEMNNEYVIKKFGINSFQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E ++   E A 
Sbjct: 178 YLAIVGDRSDNIPGIKGIGPKGAANLLREFKTLKGIYSNLELI-NKKHQEILIREKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E 
Sbjct: 237 LSYDLVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAISLI----KTYKKDILKQE- 289

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                    +++   SL  Q S I+S           L  L+  
Sbjct: 290 -------------------------ESADQKSLFKQESTISS-----------LDNLNTI 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              N  Y  I   K++   ++KL+     S    T ++D + +K I I+IS         
Sbjct: 314 DTENVKYHPITTKKELDSLMEKLKKAKYISIDTETSSLDTYTAKLIGISIS--------- 364

Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           FK  E  +I +      ++ GK  + K  I+      F+++  + IG N K+D  +L   
Sbjct: 365 FKEFEGYYIPI------EAKGKVYIEKHYIIQKFNNLFKSKPKI-IGQNYKFDYKILKNN 417

Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G   +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS    
Sbjct: 418 GFDPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFAHISLEMA 476

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             ++ E++++  +L+ +   KL  + L  +   ++ P   V+ +ME  GI +D++ LK+ 
Sbjct: 477 TSYSSEDADITFRLFNVFNEKLKEDGLDKLMYEIEMPFNRVIIEMEENGIYLDKEYLKEY 536

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656
             E+ K L  +E  I    G  FNL+SPKQ+ ++LF +L  K P   K  +   K     
Sbjct: 537 GKELGKELELIENEIIKSIGIDFNLNSPKQMHEVLFERLNLKLPDRMKKDSTDIKV---- 592

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +  G +  I+N+++ RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+
Sbjct: 593 LESLK-GQHESIENLIKHRQIAKLKSTYTDNLTELINYKTNRLHTNFIQTKTATGRITSI 651

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ D
Sbjct: 652 NPNLQNIPIKEEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKD 711

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF
Sbjct: 712 IHAETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYF 771

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSA
Sbjct: 772 DSYPKIKEFITNQINFVRNTGYSETISKRRRYIKEINSNNYLERSAAERIAINSIIQGSA 831

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI V    +  K+ +K+LLQ+HDE++ E P EE     +I+ + ME A     
Sbjct: 832 ADIMKIAMIKVFNEFKSKKMKSKILLQVHDEMLIESPIEEENETKKILKNMMETAY---- 887

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L +PL+ NI+   +W E
Sbjct: 888 TLSLPLRANIETGKSWGE 905


>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
 gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
          Length = 904

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 320/995 (32%), Positives = 519/995 (52%), Gaps = 115/995 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQK   + LVD   F++R+F+A P L R  +G P   + GF  +L K      ++ I   
Sbjct: 2   MQK---IILVDTFGFLFRSFFALPPL-RDKEGFPTGLLQGFGALLLKF-----QKEIGLQ 52

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             +        FR  +YP YK+ R +IP+ L  QLP+V    +   + ++ I+G+EADD+
Sbjct: 53  NVIFALEGGKNFRKTLYPKYKSTRQEIPQDLALQLPIVMEWIKRMKLTSVSIEGYEADDV 112

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT + +A K+G+ V I S DKDL QL++   CL+D +K+  I  E  ++K+G+ P++ +
Sbjct: 113 IATLSNLAVKKGYEVEIYSHDKDLYQLINEGICLFDPIKKIPIKAEQCLEKYGVHPQQFI 172

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYA 237
             Q+L GDS+DN+PGIP IG KTA  L+  +G+LE I      ++    KK    ILE+ 
Sbjct: 173 DFQSLVGDSVDNVPGIPSIGPKTAQKLIHHFGSLEEIYARTEELEGVVSKKIASKILEHK 232

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LSRKLV LR DV          LED       SF  +LE                 
Sbjct: 233 EEAYLSRKLVSLRKDV----------LED------FSFGSSLE----------------- 259

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQ 356
                        N  +AI ++++     K  Q      +  K+ + Q TP+K+  + + 
Sbjct: 260 ----------GGSNPMLAIASDLEEYQLYKILQ------RLKKLPTTQGTPKKIRAKGIG 303

Query: 357 KLSQYPINNDSYTKI----VNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            +   P     +  I       +++   +  + +    ++   T+ +DA  ++ +     
Sbjct: 304 GVDYSPQKKSEFHCIPHLITEERELFALLDSIPSDALIAYDCETNGLDALQARLVGF--- 360

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                   SF  + I     V  S D    GK   TK+    ++K F +     +GHN+K
Sbjct: 361 --------SFCFDGIH-GYYVPISHDYLGVGKQVDTKDAKRAIEKIFSHP---IVGHNLK 408

Query: 471 YDKLVLHRYGISM---RGFEDIMLMSYVLDSGRS-SHDIAS---IAQKWLSYTRKEILKS 523
           +D L++ +   ++   R  +D ML++Y+LDS      DI       +K ++Y   E++K 
Sbjct: 409 FD-LMIAKANFNLTPKREIQDSMLLAYLLDSASMMGLDILMEKFFGKKMIAYD--EVVKK 465

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE---RLDKPMIDVV 580
            K+   +D     +  E+A E++     L   L+ +L  ++  H+ E    L+ P I+V+
Sbjct: 466 GKTFGDVDL---ERASEYASEDAVACFCLQERLKEELQAKRCAHLLELAKDLEYPFIEVL 522

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           + ME  GI+ID +  + +   +S+ L   EE I+  + + FN++SPKQL  +LF  LK  
Sbjct: 523 ADMEYQGIKIDVEWFEALKESLSEALSQKEEEIFAHAKQNFNINSPKQLSRVLFDDLKL- 581

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
            G +   G + T  + LE++    +PII  ++E+R++ K+K+TYA+ +   +  +  ++H
Sbjct: 582 RGLRRVKGGYSTDEKTLEELK-DSHPIIPILMEYREIFKLKNTYAEPILK-LRTKENKIH 639

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T +S   T TGRL+S  PNLQNIP++T+ G++IRR FI+   KKLIS DYSQIELR+LAH
Sbjct: 640 TSFSQTGTTTGRLSSRSPNLQNIPVRTEAGKQIRRGFIADAGKKLISVDYSQIELRLLAH 699

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH-AKTINFSIIYGISPFRLAT 819
            ++   L   F   LDIH   A  +FG + +      +RH AKTINF +IYG+   +L+ 
Sbjct: 700 FSQDQELLDAFRKDLDIHLRTAQMVFGEDAKN-----KRHIAKTINFGLIYGMGTRKLSQ 754

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L+I  +EA +YI RYF  FP + +++   +  + + GY +T+ G R +++        +
Sbjct: 755 TLKISNTEAKEYIDRYFASFPTVRQFLRTEEEQILRRGYAQTLLGHRRYFN-FKGVGDFM 813

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+   R  INA  QGSAAD+ + +M  ++++ ++     KMLLQ+HDEL+F+ PEEE   
Sbjct: 814 RSNFLREGINAIFQGSAADLMKLSMNKIYQTFQNS--GVKMLLQVHDELIFQSPEEEAED 871

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           A++ I + M         LRVPL+ N+ +  NW +
Sbjct: 872 AAREIENIMNGV----YELRVPLRCNVAIGQNWAD 902


>gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ]
 gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ]
          Length = 908

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/619 (40%), Positives = 369/619 (59%), Gaps = 29/619 (4%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +++ +    W+ KL+  G  +F   T ++DA  ++ + ++ +           +E  
Sbjct: 309 YETLLDRERFAAWLDKLKQAGLIAFDSETTSLDAQQAELVGLSFAVA--------PLEAA 360

Query: 428 FIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
           +I L+ H+       + L ++ +L+ L+   E+    K+G + KYD  VL  YGI +RG 
Sbjct: 361 YIPLA-HSYMGV--PDQLDRDAVLAALRPILEDPARAKVGQHAKYDMNVLAHYGIEVRGV 417

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
             D ML SYVLDS  + HD+ S+A K+L       ++I       +  D+I+  Q   +A
Sbjct: 418 AYDTMLESYVLDSTATRHDMDSLALKYLGQGTIRFEDIAGKGAKQLTFDQIALEQAGPYA 477

Query: 543 IENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V L+L   L  KL  +  L  V + ++ P++ V++++E  G  +D  LL + S E
Sbjct: 478 AEDADVTLRLHQCLWQKLEAIPALAKVLKEIEMPLVPVLARIERHGALVDAKLLGEQSLE 537

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + + L  LE   ++L+GE FNL+SPKQLG IL+ KL  P  +KT  GQ  T    L  + 
Sbjct: 538 LGEKLQQLEREAHELAGEPFNLASPKQLGAILYDKLGLPVLSKTAKGQPSTAESVLADLA 597

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               P+ + I+  R L+K+K TY D LP  IN RT R+HT Y  A T TGRL+S +PNLQ
Sbjct: 598 EQGYPLPQVIMRHRSLNKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATGRLSSSDPNLQ 657

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T  G++IR+AF++P   +L++ADYSQIELRI+AH+A+ T L   F N LD+HR  
Sbjct: 658 NIPIRTTEGRRIRQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSLLHAFRNDLDVHRAT 717

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV  E VS   RR AK INF +IYG+S F LA Q+ + R EA  YI RYF R+PG
Sbjct: 718 AAEVFGVAPEAVSADQRRSAKAINFGLIYGMSAFGLARQIGVERKEAQAYIDRYFARYPG 777

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+    + GYVET+FGRR++  EI+S   ++R   ER AINAP+QGSAADI +
Sbjct: 778 VLAYMERTRAQAAEQGYVETLFGRRLYLPEIHSKNGALRKAAERTAINAPMQGSAADIIK 837

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN---- 957
           RAM++V   L +  L  +M+LQ+HDELV EV E++        V +++   LP+++    
Sbjct: 838 RAMVTVDAWLLESGLDARMILQVHDELVLEVREDQ--------VEALKAGLLPRMSGAAA 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V   V  NW E +
Sbjct: 890 LDVPLLVEAGVGGNWDEAH 908



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 181/354 (51%), Gaps = 28/354 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLATS-GGTPTGAVKGVLNMLLAL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + ++G EADD+I T   
Sbjct: 61  AKGPTFRDELFEHYKSHRPPMPDDLRVQIEPLHACVRALGLPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +  +G  V I + DKD+ QLV     L +T+    +D   V +K+G+ PE ++   AL 
Sbjct: 121 GSALDGRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDHAGVAEKFGVGPELIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LLQ         Y NLE +     R   K     + E+ E
Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLQGLGGGLDTIYANLERVATLPIR-GAKSLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++TDV + I ++ L     +   LI+  + LEF   ++ +          
Sbjct: 240 MAYLSHRLATIKTDVALDIEIDALHPAAPDREALIALYRELEFKSWLDELLREAHAAGPT 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRD------TTIKTSQFSSLSDQTSKINSEQT 346
            +P           G   ET +DR+        +K +   +   +T+ ++++Q 
Sbjct: 300 ADPAA--------PGTHYETLLDRERFAAWLDKLKQAGLIAFDSETTSLDAQQA 345


>gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106]
 gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106]
          Length = 927

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 323/961 (33%), Positives = 521/961 (54%), Gaps = 92/961 (9%)

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + A+ FD    TFR+E    YKANR + PE  +  +  ++   +   +P I   G+EADD
Sbjct: 11  YLAIAFDLGEPTFRHEADATYKANRSETPEDFIEDICHLQAVLEGLNVPIITAAGYEADD 70

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY----DTVKEEKIDIEHVIKKW 172
           +I T      + G+AV ++S D+DL QL+      + L+       K  +  I++V+ K 
Sbjct: 71  VIGTLAKQGREAGYAVKVLSGDQDLFQLIDGDEQISVLHLSPGKGNKTIEFKIQNVVDKL 130

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            I PE+++  +AL GD  DNIPG+ GIG KTA  LL EY +L+ I  +  +IK   R++ 
Sbjct: 131 QIKPEQLIDYKALCGDKSDNIPGVRGIGDKTAVQLLSEYNSLDEIYASLDQIKAATRKK- 189

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + +  E A  S+++  +  DVP+ I +        +  ++I  LK LEF   +    +  
Sbjct: 190 LEDGKEAAYHSQRMATIIQDVPLKISVADCQFSKLDFSQIIPKLKELEFWSFVEEAESQQ 249

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             +  +        + TE+K I  E+      T  +    +  +Q S  + E+T      
Sbjct: 250 VFEETS--------SQTEDKTINSESVSSESETSDSEGLDN-DEQLSFWSYEET------ 294

Query: 353 ERLQKLSQYPINNDSYTKIVNT-KDIQQWVQKLETIGSASFKIITDT----MDAFHSKPI 407
           +  QK+++  +    + +I+ T K +Q+ V+ LET    +  +  DT    ++   +K +
Sbjct: 295 QAAQKVAEQKL---IHPEIIQTEKQLQELVKILETFTDKNNPVAWDTETTALEPRDAKLV 351

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIG 466
            I           S K E  +I L   T       N L KE +L  L+   E+  + K  
Sbjct: 352 GIGCCW------GSEKTEIAYIPLEHKTG------NQLKKETVLEALRPILESNKYPKAL 399

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEI 520
            N K+D+L+    GI++ G   D ML SYVL+    SH++  +++K+L     + + K++
Sbjct: 400 QNAKFDRLIFKVQGINLAGVVFDTMLASYVLNPD-DSHNLTELSRKYLDSGILAKSYKQL 458

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHVYERLDKP 575
             S+K +I    I        A E   + +    L+ PKL  E     +L  +   +++P
Sbjct: 459 SLSKKQTIADLDIPT------AAEYCGLDVYATYLIVPKLRKELQDFPELHKLLLDIEQP 512

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  V+++ME  GI+I+ D LKQ+S+++ K L  +E+  Y  +G +FNL SPKQL  +LF 
Sbjct: 513 LEPVLAEMEYQGIRINVDYLKQLSSQLEKKLEEIEKQAYQEAGTEFNLGSPKQLSKLLFE 572

Query: 636 KLKFPS--GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            L+  +    KTKTG + T A+ LE++  GD+PII +ILE R L+K+KSTY D+LP  ++
Sbjct: 573 TLELSTKKSRKTKTG-YSTDAKVLEKLK-GDHPIIDSILEHRTLAKLKSTYVDALPELVH 630

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            +TQR+HT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+  P   L+SADYSQI
Sbjct: 631 PQTQRIHTDFNQAITTTGRLSSSNPNLQNIPIRTEFSRQIRQAFLPEPGWLLVSADYSQI 690

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGI 812
           ELRILAH++    L + ++ + DIH + A  +F   +I+ V+P+ RR  KTINF +IYG+
Sbjct: 691 ELRILAHLSDEPILVEAYKTNRDIHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYGM 750

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYD 870
              R + ++++  ++A ++I+R+  ++  + EY+E+ K      GYV T+ GRR   H++
Sbjct: 751 GALRFSREMKVNTNKAKEFIERFNQQYEKLFEYLEEQKKQAISQGYVTTLLGRRRYFHFE 810

Query: 871 EI-----------NSPKSSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLED 913
                        + P   ++ I +      RAA NAPIQGS+ADI + AM+ +   L++
Sbjct: 811 SPSLKALKESPLEDIPLDELKKIGQNDAQFLRAAANAPIQGSSADIIKIAMVKLRDVLQN 870

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           ++   K+LLQ+HDELVFEVP EE       I  +ME A     +L+VPL V+I   +NW 
Sbjct: 871 YR--AKLLLQVHDELVFEVPPEEWEELQPQIKQTMEDA----YSLKVPLLVDIHAGDNWM 924

Query: 974 E 974
           E
Sbjct: 925 E 925


>gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1]
 gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1]
          Length = 908

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 333/979 (34%), Positives = 504/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP+YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPNYKATRDSPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYIKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAASLLREFKTLDGIYSNLELI-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 LLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEATTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYHSITTKIELDDLIESLKKAKYTSIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G S +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ        I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A    
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 889 -TLNLPLRANIETGKSWGE 906


>gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
 gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
          Length = 908

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 333/979 (34%), Positives = 506/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ     +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQ-----HESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +LRI + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELRITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A    
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 889 -TLNLPLRANIETGKSWGE 906


>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
 gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
          Length = 938

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/624 (39%), Positives = 373/624 (59%), Gaps = 40/624 (6%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE-- 425
           Y  +     ++ W++++E     +    T ++D   ++ + I++S           VE  
Sbjct: 336 YDTVSTEAQLEDWMRRIEAAPLVAIDTETTSLDPMQAQLVGISLS-----------VEPG 384

Query: 426 -TIFIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              +I ++ H   D  G      L++E +L  ++ + E+    K+G N+KYD  V   +G
Sbjct: 385 VACYIPVA-HRGPDVAGLPDHGQLSREFVLGRMRAWLEDASRPKLGQNLKYDVHVFANHG 443

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           + +RG   D ML SYVL S R+ H + S+A++ LS    T +E+     S I  D+I  +
Sbjct: 444 VKLRGVAHDTMLQSYVLASHRN-HGMDSLAERLLSLKTITYEEVCGKGASQIGFDQIDLA 502

Query: 537 QVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +  E+A E+++V L+L   + P++     L  VYE ++ P+  V+ ++E  G+ ID + L
Sbjct: 503 RATEYAAEDADVTLRLHRKMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERL 562

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              SAE+ + +L+LE+  Y+ +G+ FNL SPKQ+G+ILF+++K P   KT +G   T  +
Sbjct: 563 AAQSAELGQRMLALEQAAYEAAGQPFNLGSPKQIGEILFSQMKLPVVKKTASGAPSTDEE 622

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +TGRLAS
Sbjct: 623 VLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTSYGQATAVTGRLAS 681

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIP++T+ G++IR AFI+ P   ++SADYSQIELRI+AHI+    L + F N  
Sbjct: 682 TEPNLQNIPVRTEEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAFANGE 741

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  A EIFGV  E VS + RR+AK INF +IYG+S F LA  L I R  A  YI RY
Sbjct: 742 DIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIEREAAKHYIDRY 801

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+  Y+E+T+   R+ GYVET+FGRR+   +IN      R   ERAAINAP+QG+
Sbjct: 802 FMRYPGVAHYMEETRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAPMQGT 861

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + +MI+V   LE   L T+ ++Q+HDELV EVPE E+          + K  LP+
Sbjct: 862 AADLIKLSMIAVQGWLERDGLQTRQIMQVHDELVLEVPEHEL---------ELVKVRLPE 912

Query: 956 I-----NLRVPLKVNIKVSNNWQE 974
           +      LRVPL   +    NW+E
Sbjct: 913 LMCSVAQLRVPLVAEVGSGANWEE 936



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 99/250 (39%), Positives = 153/250 (61%), Gaps = 6/250 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  +GLP  AI G  NML KL    R +  A + A +FD
Sbjct: 8   LLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAEYSACVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YP YK +RP +PE L  Q+  +  A +A G P + + G EADD+I T + 
Sbjct: 63  AKGKTFRDDMYPAYKEHRPSMPEDLARQIEPIHEAVRAMGWPIVVVDGVEADDVIGTLSR 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G    + + DKDL QLV+    L +T+  E +D   V+ K+G+PPE+++   +L 
Sbjct: 123 QATEQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPPGVVAKFGVPPERIIDYLSLI 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+P +G KTA   L E+G+L+ ++  A  IK     EN+    +   ++R+L
Sbjct: 183 GDAVDNVPGVPKVGPKTAVKWLAEHGSLDGVIAAAPGIKGVV-GENLRNTLDWLPMARQL 241

Query: 247 VMLRTDVPIT 256
           V ++TD  ++
Sbjct: 242 VTVKTDCDLS 251


>gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
 gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
          Length = 908

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 333/979 (34%), Positives = 506/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ     +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQ-----HESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEILIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +LRI + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELRITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A    
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 889 -TLNLPLRANIETGKSWGE 906


>gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr]
 gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr]
          Length = 908

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 332/978 (33%), Positives = 504/978 (51%), Gaps = 85/978 (8%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  +
Sbjct: 4   LYLIDALNIIFRNYHVLKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLII 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP+YKA R   P  L+PQ+  ++       IP  EI+G+EADDI+A+
Sbjct: 58  AFDSEVPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIEGYEADDILAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181
           +   AEK  +   IIS DKDL+Q +S    +        +++  E+VIKK+G+   ++  
Sbjct: 118 FAKKAEKNNYLTYIISPDKDLLQTMSEYIKILKIENNSFVEMNNEYVIKKFGVNSFQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E +++  E A 
Sbjct: 178 YLAIVGDRSDNIPGIKGIGSKGAANLLREFKTLKGIYSNLELI-NKKHQEILIKEKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  LV L  ++ I   +E+  L++     +IS  +      LI     TY  D      
Sbjct: 237 LSYDLVSLEENLQIP-EIENFYLKNF-SEEIISLFEKHSAVALI----KTYKKDILK--- 287

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                   EN G             + S F            EQ P     + L  L+  
Sbjct: 288 -----QKEENLG-------------QKSLF------------EQEP---ITKSLNTLNTI 314

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              N  Y  I   K++   ++ L+     S    T ++D + +K I I+IS         
Sbjct: 315 DTENVKYHSITTKKELDNLIESLKQAKYISIDTETSSLDTYTAKLIGISIS--------- 365

Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           FK  E  +I +      ++ GK  + K  I+      F++   + IG N K+D  +L   
Sbjct: 366 FKEFEGYYIPI------EAKGKFYIEKHYIIQKFNNLFKSNPKI-IGQNYKFDYKILKNN 418

Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G S +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS    
Sbjct: 419 GFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMA 477

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             ++ E++++  +L+ +   KL  + L  +   ++ P   V+ +ME  GI +D+  LK+ 
Sbjct: 478 TSYSCEDADITFRLFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEY 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656
             E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K     
Sbjct: 538 GKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESL 597

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            EQ     +  I+N+++ R+++K+KSTY D+L   IN +T R+HT +    T TGR+ S+
Sbjct: 598 REQ-----HESIENLIKHRRIAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSI 652

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ D
Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKD 712

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF
Sbjct: 713 IHIETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYF 772

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSA
Sbjct: 773 DSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSAIQGSA 832

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI V    +  K+ +K+LLQ+HDE++ E P +E     +I+   ME A     
Sbjct: 833 ADIMKIAMIKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETAY---- 888

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L +PL+ NI+   +W E
Sbjct: 889 TLNLPLRANIETGKSWGE 906


>gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
 gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
          Length = 908

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 330/978 (33%), Positives = 517/978 (52%), Gaps = 85/978 (8%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  +
Sbjct: 4   LYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFVGFFKTLFFII----KEKNPKHLII 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP+YKA R   P+ L+PQ+  ++       IP  EI+G+EADD++A+
Sbjct: 58  TFDSEIPTFRKQKYPNYKATRDAPPDDLIPQIGWIKKGLLKAKIPIFEIEGYEADDLLAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWGIPPEKMVC 181
           +   A +  +   IIS DKDL+Q++S    +   +  +  ++D E+VIKK+GI   ++  
Sbjct: 118 FAKKATQNNYLTYIISPDKDLLQIMSEHIKILKIENNRFVEMDNEYVIKKFGINSFQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E +++  E A 
Sbjct: 178 YLAIVGDRSDNIPGIKGIGPKGAANLLREFKTLKGIYSNLELI-TKKHQEILIKEKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  LV L  ++ I   +E+  L++     +IS  +      LI     TY  D      
Sbjct: 237 LSYDLVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAITLI----KTYKRD------ 284

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
               I   E + +A ++   +++T K+       D  + I++E                 
Sbjct: 285 ----ILKQEEENLAQKSLFKQESTTKSI------DTLNTIDTE----------------- 317

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              N  Y  I   K++   ++ L+     S    T ++D + ++ I I+IS         
Sbjct: 318 ---NVKYHSITTKKELDNLIESLKKAKYISIDTETSSLDIYTARLIGISIS--------- 365

Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           FK  E  +I +      ++ GK  + K  I+     FFE+   + IG N K+D  +L   
Sbjct: 366 FKEFEGYYIPI------EARGKIYIEKHYIIQKFNNFFESNPKI-IGQNYKFDYKILKNN 418

Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS    
Sbjct: 419 GFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFAGISLEMA 477

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             ++ E++++  +L+ +   KL  + L  +   ++ P  +V+ +ME  GI +D++ LK+ 
Sbjct: 478 TSYSSEDADITFRLFNVFSKKLKEDSLDKLMHEIEMPFNNVIIEMEENGIYLDREYLKEY 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656
             E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K     
Sbjct: 538 GKELGKELELIETEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKV---- 593

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +  G +  I+N+++ RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+
Sbjct: 594 LESLR-GQHESIENLIKHRQIAKLKSTYTDNLIELINYKTNRLHTNFIQTKTATGRVTSI 652

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ D
Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKD 712

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF
Sbjct: 713 IHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFIDSYF 772

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER +IN+ IQGSA
Sbjct: 773 DSYPKIKEFIINQINFVRNTGYSETILKRRRYIKEINSNNYLERSAAERISINSIIQGSA 832

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V    +  K+ +K+LLQ+HDE++ E P +E     +I+   ME A     
Sbjct: 833 ADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETAY---- 888

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L  PL+ NI+   +W E
Sbjct: 889 TLTPPLRANIETGKSWGE 906


>gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
 gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
          Length = 976

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 320/1024 (31%), Positives = 537/1024 (52%), Gaps = 118/1024 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59
           L LVDG S  +R+FYA    S+  DG        P +   GF   L    +N   E +  
Sbjct: 13  LLLVDGHSLAFRSFYA---FSKGIDGGLTTKEGFPTSVTYGFLKSLLDNCKNISPEGVC- 68

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118
              + FD    TFR+E+ P+YKANR   P++    +  + +   ++  +P  +  G+EAD
Sbjct: 69  ---ITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYEAD 125

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168
           D++ T    A  +G+ V I+S D+DL QLV     +Y           +     I+   V
Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKGIYVLYMGGGPYAKSGNPTLINENGV 185

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINA 221
            +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E       Y  L+ IL N 
Sbjct: 186 KEKLGVVPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKILQNN 245

Query: 222 SRIKQKKRRENILEYAET----ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
            +  +   + +++E  +     A LSR L  + T+VP+ +  +   L++ N   L   L+
Sbjct: 246 DKKYKGFIKGSVIEKLKNDKYNAYLSRDLAKINTEVPLILS-DGYELKNINQELLSESLQ 304

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
            LE + L+ ++                  N+T +KG       D++   K  + +     
Sbjct: 305 KLELSTLLRQIDI---------------FNSTFSKG-----GFDKNNVAKVDEKAPKVSS 344

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKIIT 396
            +++++ +        ++ K+S   +NN           + + +Q+LE      S    T
Sbjct: 345 KNELDNREN-------KIPKISVTIVNNFEL--------LDKLIQRLEKTNEIVSLDTET 389

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           ++++   ++ + I +   ++ DD        +I L   T +++T + ++ +E+ S ++ +
Sbjct: 390 NSLNPIDAELVGIGLCLGEETDDL------FYIPLGHQTKKETTNQLSI-EEVFSKIRTW 442

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            E+    K   N K+D+ +   +G+ ++G   D +L  Y+L++ +  H ++ I+ +   +
Sbjct: 443 IEDPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLNN-QEKHGLSEISFRLFGF 501

Query: 516 ---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVYE 570
              + KE +   K    +D I ++ V  +   +  +  ++  + + +  +EK  L+ ++E
Sbjct: 502 KPPSFKETVGKNKDFSFVD-IDEASV--YCGYDVFLTFKIVKIFKERFSMEKDELIKLFE 558

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+L+   FNLSSPKQLG
Sbjct: 559 EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEGNFNLSSPKQLG 618

Query: 631 DILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           +ILF KL        KTKTG W T A  LE++   ++ II+ +++ R LSK+ STY D+L
Sbjct: 619 EILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQYLIKHRTLSKLLSTYIDAL 676

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           PN IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SA
Sbjct: 677 PNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSA 736

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRILAH+A    L   F  + DIH + A  IF    E++S   RR  KTINF +
Sbjct: 737 DYSQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGV 794

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+  
Sbjct: 795 IYGMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKRE 854

Query: 869 Y------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           +                  D  ++ ++ +   + RAA NAPIQGS+ADI + AM+ ++K 
Sbjct: 855 FKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQINKK 914

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
             +  +  KMLLQ+HDEL+FEV  + +   ++++  +ME      + L VPL V+I + +
Sbjct: 915 FIEMNVPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMEDC----VKLNVPLLVDIGIGD 970

Query: 971 NWQE 974
           NW E
Sbjct: 971 NWME 974


>gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
 gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
          Length = 908

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 333/978 (34%), Positives = 503/978 (51%), Gaps = 85/978 (8%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  +
Sbjct: 4   LYLIDALNIIFRNYHVLKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLII 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP+YKA R   P  L+PQ+  ++       IP  EI+G+EADDI+A+
Sbjct: 58  AFDSEVPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIEGYEADDILAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181
           +   AEK  +   IIS DKDL+Q +S    +        +++  E+VIKK+GI   ++  
Sbjct: 118 FAKKAEKNNYLTYIISPDKDLLQTMSEYIKILKIENNSFVEMNNEYVIKKFGINSFQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E +++  E A 
Sbjct: 178 YLAIVGDRSDNIPGIKGIGSKGAANLLKEFKTLKGIYSNLELI-NKKHQEILIKEKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  LV L  ++ I   +E+  L++     +IS  +      LI     TY  D      
Sbjct: 237 LSYDLVSLEENLQIP-EIENFHLKNF-SEEIISLFEKHSAVALI----KTYKKDILK--- 287

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                   EN G             + S F            EQ P     + L  L+  
Sbjct: 288 -----QKEENLG-------------QKSLF------------EQEP---ITKSLNTLNTI 314

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              N  Y  I   K++   ++ L+     S    T ++D + +K I I+IS         
Sbjct: 315 DTENVKYHSITTKKELDNLIESLKQAKYISIDTETSSLDTYTAKLIGISIS--------- 365

Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           FK  E  +I +      ++ GK  + K  I+      F++   + IG N K+D  +L   
Sbjct: 366 FKEFEGYYIPI------EAKGKFYIEKHYIIQKFNNLFKSNPKI-IGQNYKFDYKILKNN 418

Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G S +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS    
Sbjct: 419 GFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMA 477

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             ++ E++++  +L+ +   KL  + L  +   ++ P   V+ +ME  GI +D+  LK+ 
Sbjct: 478 TSYSCEDADITFRLFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEY 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656
             E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K     
Sbjct: 538 GKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESL 597

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            EQ     +  I+N+++ R+++K+KSTY D+L   IN +T R+HT +    T TGR+ S+
Sbjct: 598 REQ-----HESIENLIKHRRIAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSI 652

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ D
Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKD 712

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+++F    ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF
Sbjct: 713 IHVETASKLFKTEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYF 772

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSA
Sbjct: 773 DSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSAIQGSA 832

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI V    +  K+ +K+LLQ+HDE++ E P +E     +I+   ME A     
Sbjct: 833 ADIMKIAMIKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETAY---- 888

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L +PL+ NI+   +W E
Sbjct: 889 TLNLPLRANIETGKSWGE 906


>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
 gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
          Length = 898

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 315/974 (32%), Positives = 503/974 (51%), Gaps = 91/974 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F++R+++A P L +   G P   + GF N++ ++ +  R + I   FA+  D
Sbjct: 4   LTIIDTFGFLFRSYFALPPL-KSPSGFPTGLLMGFANLIAQIAKEYRSDYIV--FAL--D 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R EI  +YKA RP +PE LL QLP+     +  G   I I G+EADD+IA+  Y
Sbjct: 59  SKEEGIRKEIDANYKAQRPDVPEELLKQLPVALEWIEKMGFKNITIPGYEADDVIASVNY 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A      V IIS DKDL QL+   T L+D +K+++I  E  I K+G+ P + V  Q+L 
Sbjct: 119 FANSHDVFVKIISHDKDLYQLIDGNTFLFDPLKKQEIREEQCIAKYGVSPAQFVDYQSLV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ETARLSRK 245
           GDS DN+PG+ G+G K+A  L++ +G+LE I      +  ++ R  +LE   E A  SR+
Sbjct: 179 GDSADNVPGVKGVGAKSAQKLIESFGSLEGIYERLEEVTPERLR-GLLEMGREDAYRSRE 237

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV LR         EHL LED +       L++  F  L   ++ + +     ++ V+  
Sbjct: 238 LVRLR---------EHL-LEDFD-------LESCRFPSLHPLLSISGELMDLGMKRVLEK 280

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
           I          E E    +T    + S L                F+ R           
Sbjct: 281 IQK--------EGEWIAPSTPSAPKSSPLKGN-------------FVRR----------- 308

Query: 366 DSYTKIVN-TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              T++V+ TK +++ +  L      +F   TD+++   +K +  + S    + +  + V
Sbjct: 309 ---TELVDSTKRLEELLSSLTPSSVVAFDTETDSLETRSAKLVGFSFSL---EGEVGYYV 362

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISM 483
                   V  S    G     +E    ++K F  +    +GHN+K+D  +LH   G   
Sbjct: 363 -------PVAHSYLGAGDQVSLEEARGAIEKIFSAQ---VVGHNLKFDLEILHGALGFYP 412

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           +G   D M+++++LDSG +   +    ++W  +      K  K      +++  +  E+A
Sbjct: 413 KGRIGDSMILAWLLDSG-APVGLDFQMKRWFGHEMIPFEKMVKKGETFAQVALEEAAEYA 471

Query: 543 IENSNVILQLWLLLRPKL---IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            E++    +L+  L  +L     E LL + E L+ P I  + +ME  GI++D +   +++
Sbjct: 472 GEDALATYRLYFRLEEELKKRGCESLLGLAESLEFPFIHTLIEMEERGIRVDTEFFARLN 531

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           AE+   +  L   ++  +G +FNL+S +QLG +LF KL  PSG KTKTG + T  + L +
Sbjct: 532 AEVEVRIRELSGEVFAHAGGEFNLNSTQQLGGVLFEKLHLPSGKKTKTG-YSTDEKVLSE 590

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEP 718
           +  G +PII+ ILE+R+L K+KSTY + L    +  + +R++T +    T TGRL+S  P
Sbjct: 591 L-LGVHPIIEPILEYRELFKLKSTYIEPLTRFALQDKNRRIYTSFLHTGTSTGRLSSKNP 649

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP+KT+ G+KIR+ FI+     LIS DYSQIELR+LAH ++   L   F+   DIH
Sbjct: 650 NLQNIPVKTEAGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIH 709

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A +IFG   E+ +   R  AKTINF +IYG+   +L+  LRI   EA  YI  YF  
Sbjct: 710 YETAKKIFG---EREAKAHRGIAKTINFGLIYGMGSRKLSETLRISPKEAKGYIDSYFAS 766

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FP +  +++  + F  ++GY ET+ GRR +++   +P+   +    R A+N   QGSAAD
Sbjct: 767 FPTVKSFLKAQEEFALEHGYTETLLGRRRYFEFQQAPEYQ-KAAYLREAVNCIFQGSAAD 825

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + AM  + +     + +  +LLQ+HDEL+FE P+E     ++ +   ME    P   L
Sbjct: 826 LIKLAMNEIRRRFAQEE-SLWLLLQVHDELIFEAPKEHAEALARELALVME-GIHP---L 880

Query: 959 RVPLKVNIKVSNNW 972
           RVPL+  I +  +W
Sbjct: 881 RVPLQCGISLGEHW 894


>gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
 gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
          Length = 964

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 326/1022 (31%), Positives = 511/1022 (50%), Gaps = 132/1022 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R++YA         R   G+P +   GF   L ++++  + +++A    
Sbjct: 19  LLLVDGHSLAFRSYYAFAKGRDGGLRTRTGIPTSVCFGFLKALLEVMEQQQPKALA---- 74

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E   +YKANR + PE        +    Q   +P +   G+EADD++ 
Sbjct: 75  IAFDLGGPTFRHEADENYKANRDEAPEDFKIDTDNLVALLQTLNLPILVEPGYEADDLLG 134

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---LY---------DTVKEEKIDIEHVIK 170
           T      + G+ V I+S D+DL QLV P      LY         +     +ID   VI 
Sbjct: 135 TVAQRGAEAGYRVRILSGDRDLFQLVDPEGAIRVLYLGNTFGRSANREAAREIDPAAVID 194

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K G+PPE+++  +AL GDS DNIPG+ GIG KTA  LLQ +G+L+ I  N   IK   R+
Sbjct: 195 KLGVPPEQVIDFKALCGDSSDNIPGVKGIGPKTAVDLLQAWGDLDRIYDNLEAIKPAVRK 254

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE---FTKLINR 287
           + +    E A  SRKL  + TD+P+ I  +H  L   +   ++ +L+ LE   F + ++R
Sbjct: 255 K-LESDREAAYHSRKLAQIVTDIPLAIDWDHYALTGFDEQEVLPWLEKLELQAFRRQVDR 313

Query: 288 VATTYDCDAANIEPVV---LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           +   +      +E +    LD  T E            +T  +  ++  L  Q     + 
Sbjct: 314 LQQLFGGQPPTVEALSDESLDFWTAE------------ETAAQQPRWPQLQPQIITTAAA 361

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIV----NTKDIQQWVQKLETIGSASFKIITDTMD 400
            T     LE+           DS   IV     T D+   + +L  IG A          
Sbjct: 362 LTDLVTLLEQ----------RDSPEAIVAWDTETTDLDPRLAQLVGIGCA---------- 401

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
            +  +P  +A   L  ++     ++T+                      L+ L+   E++
Sbjct: 402 -WGEEPDQLAYIPLGHEEGEQLPLQTV----------------------LTALRPILESD 438

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              K   N K+D+L+L   GI + G   D ML SY+L+     H + ++A +WL      
Sbjct: 439 RHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNPSLG-HSLDALADRWLK----- 492

Query: 520 ILKSRKSS--IPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLH-VYERL 572
            L++R  S  +P  K            +   + +V+ +L  LL+  +     L  + E +
Sbjct: 493 -LQTRSYSDLVPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETV 551

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+  V+++ME  GI+ID+  L ++S  +   L  LE   + L+G++FNL SPKQL ++
Sbjct: 552 ELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGDRFNLGSPKQLSEL 611

Query: 633 LFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           LF KL        KTKTG + T A  LE++  GD+PII  ILE   L+K+KSTY D+LP+
Sbjct: 612 LFEKLGLNVKKSRKTKTG-YSTDAAVLEKLQ-GDHPIIDLILEHCTLAKLKSTYVDALPS 669

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            +     R+HT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+      L +ADY
Sbjct: 670 LVAA-DGRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFLPREGWLLAAADY 728

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELRILAH+++   L + +    D+HR+ A+ +F  + E+++ + RR  K INF +IY
Sbjct: 729 SQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIY 786

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G+   R A +      EA  +I R++ R+P +  Y++  +      GYVET+ GRR ++D
Sbjct: 787 GMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGRRRYFD 846

Query: 871 EINSPKSSIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLE 912
             ++    +R  +                   RAA NAPIQGS+ADI + AM+ +   L+
Sbjct: 847 FEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAPIQGSSADIIKVAMVQLQALLQ 906

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++   +MLLQ+HDELV E+P EE  + +  I  +ME+A    + L VPL V +   +NW
Sbjct: 907 SYQ--ARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQA----VQLTVPLAVELHAGHNW 960

Query: 973 QE 974
            E
Sbjct: 961 ME 962


>gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo]
 gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo]
          Length = 889

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 329/958 (34%), Positives = 499/958 (52%), Gaps = 82/958 (8%)

Query: 24  PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKAN 83
           PLL+ +  G  VNA  GF   L+ ++    KE    H  + FD    TFR + YP+YKA 
Sbjct: 5   PLLNTR--GENVNAFIGFFKTLFFII----KEKNPKHLIITFDSEIPTFRKQKYPNYKAT 58

Query: 84  RPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD 143
           R   P+ L+PQ+  ++       IP  EI+G+EADD++A++   A K  +   IIS DKD
Sbjct: 59  RDAPPDDLIPQIGWIKEGLLKAKIPIFEIEGYEADDLLASFAKKAAKNNYLTYIISPDKD 118

Query: 144 LMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
           L+Q +S    +         ++D E+VIKK+GI   ++    A+ GD  DNIPGI GIG 
Sbjct: 119 LLQTMSEHIKILKIENNSFVEMDNEYVIKKFGINSFQIKDYLAIVGDRSDNIPGIKGIGP 178

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           K AA LL+E+  L+ I  N   I  KK +E +++  E A LS  LV L  D+ I   +E+
Sbjct: 179 KGAANLLREFKTLKGIYSNLELI-SKKHQEILIKEKENAFLSYDLVSLEEDLKIP-EIEN 236

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
             L++     LIS  +      LI     TY  D          I   E + +A      
Sbjct: 237 FSLKNF-SKELISLFEKHSAISLI----KTYKKD----------ILKQEEENVA------ 275

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
                + S F+               Q+   + L  L+     N  Y  I   K++   +
Sbjct: 276 -----QKSLFT---------------QEPIADNLDTLNTIDTENVKYHSITTKKELDNLI 315

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK-VETIFIDLSVHTSQDST 440
           + L+     S    T ++D + ++ I I+IS         FK  E  +I +      ++ 
Sbjct: 316 ESLKKAKYISIDTETSSLDIYTARLIGISIS---------FKEFEGYYIPI------EAK 360

Query: 441 GKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGFEDIMLMSYVLDS 498
           GK  + K  I+      FE+   + IG N K+D  +L   G S +  + D M+ +Y++D+
Sbjct: 361 GKIYIEKHYIIQKFNNLFESNPKI-IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDT 419

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
             S   +  +A+K+L +   +     + +     IS      ++ E++++  +L+ +   
Sbjct: 420 N-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNIFTK 478

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           KL  + L  +   ++ P  +V+ +ME  GI +D++ LK+   E+ + L  +E  I    G
Sbjct: 479 KLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEIIKSIG 538

Query: 619 EKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             FNL+SPKQ+ +ILF KL  K P   K  +   K     LE +  G +  I+NI++ RQ
Sbjct: 539 INFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKV----LESL-IGQHESIENIIKHRQ 593

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ PNLQNIPIK + G+KIR+A
Sbjct: 594 IAKLKSTYTDNLIELINHKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRKIRKA 653

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F        ISADYSQIEL ILAH+++   L + FEN+ DIH   A+++F +  ++++P 
Sbjct: 654 FKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKEITPD 713

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           +RR AK+INF IIY +S FRLA +L I + EA  +I  YF  +P I E+I    NFVR  
Sbjct: 714 LRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIKEFITNQINFVRNT 773

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GY ETI  RR +  EINS     R+  ER AIN+ IQGSAADI + AM+ V    +  K+
Sbjct: 774 GYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAADIMKIAMVRVFNEFKSKKM 833

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +K+LLQ+HDE++ E P +E     +I+   ME A      L +PL+ NI+   +W E
Sbjct: 834 ESKILLQVHDEMLIESPIKEKNEVEKILKIMMETAY----TLNLPLRANIETGKSWGE 887


>gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 931

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 325/989 (32%), Positives = 523/989 (52%), Gaps = 84/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  YR+FYA         R   G+P +   GF   L ++L     +   +H A
Sbjct: 8   LLLVDGHSLAYRSFYAFAYSREGGLRTSTGIPTSVSFGFLKSLLEVLD----KYTPTHVA 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR+E    YK+ RP+ P   +  +  ++    A  IP + + GFEADDI+ 
Sbjct: 64  VAFDTRQPTFRHEADETYKSGRPETPPEFIEDVENLKQVLTALRIPILVVPGFEADDILG 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEE--KIDIEHVIKKWGIPPE 177
           T + +A ++ + V I+S D+DL QL+        L+   K+   +   E V +K GI P 
Sbjct: 124 TLSRLAPQD-YRVQILSGDQDLFQLIDTDGRVRVLHLNSKDRISEFGPEQVKEKLGIWPW 182

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +AL GD  DNIPG+ GIG K A  LL+ YG+L+ I  +   I Q K ++ + E  
Sbjct: 183 QVVDYKALCGDPSDNIPGVKGIGPKRAVELLERYGSLDEIFDHLDEI-QGKVQQYLKEGI 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A  S+ +  ++ D    +PL      D    +L  F +A     L      ++     
Sbjct: 242 PAAHHSQFMARIKCD----VPLS----PDWESMKLTGFDQAELLPLLEKLEFHSFIAQVR 293

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+        T   GI  E E+          F+   D  +  +     + L+ +    
Sbjct: 294 KIQ--------TALGGIPTEAEV-------VGAFNPTGDPANAPD-----EALWFD---- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLD 415
            +  P+ +    +I++T +  + +++      G  ++   T ++D   ++ + I      
Sbjct: 330 FALDPVPSLPAVRIIDTPEQLELLRQELLACPGIVAWDTETTSLDPRDAQLVGIGCCW-- 387

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            + D ++        L +   Q S     L K+    L+  +E+ +  K   N KYD  +
Sbjct: 388 SEGDIAY--------LPIGHRQGSNLDWELVKQ---SLQPLWEDPNRPKSLQNCKYDLSI 436

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPID 531
              +GI ++G + D ML SYVLD   +SH++A +A   L   + + K++L   +S   I 
Sbjct: 437 FRAHGIRLQGIQFDPMLASYVLDP-EASHNLADLAATHLNLPTTSYKKLLGKEQS---IA 492

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            I  S+V E+   ++    +L  +L  KL     +L  ++ +++ P+  V+ +ME  GI+
Sbjct: 493 DIPISKVAEYCGTDAYCAYRLVPILTEKLQKTDPRLWDLFIQVELPLAQVLEEMEWIGIR 552

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP--SGAKTKT 647
           +D + L+Q S E+ + L SLE+  Y  +GE FNL+SPKQLG +LF KLK       KT T
Sbjct: 553 VDTEFLRQFSQELEQELQSLEQKAYAQAGETFNLNSPKQLGSLLFEKLKLDIRKTRKTAT 612

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T A  LE++  GD+P+I+ I+++R L+K+KSTY D+LP  +   T RVHT ++   
Sbjct: 613 G-YSTDASVLEKLE-GDHPLIETIVQYRTLAKLKSTYVDALPALVRSDTGRVHTDFNQTV 670

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+T+  ++IR+AFI      L +ADYSQIELRILAH+++   L
Sbjct: 671 TATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQEGWLLTAADYSQIELRILAHLSQEPAL 730

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F +  D+H + A  +  +  ++++ + RR AKTIN+ +IYG+   R A    +  SE
Sbjct: 731 LEGFRSGEDVHTLTARLL--LEKQEITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSE 788

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +++R+  R+ GI  Y+  T+ FV ++GYVETI GRR ++  ++      +    RAA
Sbjct: 789 AKQFLQRFNERYAGIFAYLRSTEAFVEKHGYVETILGRRRYFPNLSRLTGHRKQAELRAA 848

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSA+DI + AM+ + + L++ +  +++LLQ+HDELVFEV   E      +I   
Sbjct: 849 VNAPIQGSASDIIKVAMVRLRQKLQNFR--SRLLLQVHDELVFEVDPSEWQALKPLIQRE 906

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A    + L +PL V+I++ +NW+E N
Sbjct: 907 MEGA----VPLSIPLVVDIQIGHNWKEAN 931


>gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
 gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
          Length = 977

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/534 (43%), Positives = 339/534 (63%), Gaps = 11/534 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506
           E+L+ LK + E++   K+G NIKYD  VL  +GI++RG  +D ML SYVL++ R+ H + 
Sbjct: 450 EVLAVLKPWLESDAQQKVGQNIKYDMHVLANHGITLRGVVDDTMLESYVLEAHRT-HGMD 508

Query: 507 SIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IV 562
           ++A + L   + T +E+      +I  D+++      +A E+++V LQL   L P +   
Sbjct: 509 ALAGRHLNRTTITYEEVAGKGAKAIGFDQVALDVATPYAAEDADVTLQLHRTLWPAIEAS 568

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           E+L H+Y  ++ P + V+  ME  G+ +D+D L+  S ++++ L  LE   ++L+G+ FN
Sbjct: 569 ERLRHIYRNIEMPTLQVLYDMERHGVLLDRDRLRAQSQQLAEQLQELERQAHELAGQPFN 628

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           L S KQLG+ILF +L  P   KT  G+  T    LE++   D P+ K +L+WR L+K+KS
Sbjct: 629 LGSTKQLGEILFERLGLPVVKKTPAGKPSTDESVLEKLAL-DYPLPKVLLQWRGLAKLKS 687

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D LP  ++ +T RVHT YS A  +TGRLAS +PNLQNIP++T  G++IR AFI+PP 
Sbjct: 688 TYTDKLPEMVDPKTGRVHTTYSQAVAITGRLASSDPNLQNIPVRTPEGRRIREAFIAPPG 747

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            +++SADYSQIELRI+AHI++   L + F +  D+HR  A+E+FGV I +V+ + RR+AK
Sbjct: 748 HQMMSADYSQIELRIMAHISQDAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAK 807

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            INF +IYG+S F LA  L I R  A  YI RYF R+PG+  Y+E+T+   R+ GYVET+
Sbjct: 808 VINFGLIYGMSAFGLAANLGIERGAAQAYIDRYFARYPGVAAYMERTRAQAREQGYVETV 867

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           FGRR+   EI S     R + ERAAINAP+QG+AAD+ + AMI VH  L    L  ++++
Sbjct: 868 FGRRLWLPEIGSSNMGRRQMAERAAINAPMQGTAADLIKLAMIDVHAWLRRENLGARLVM 927

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           Q+HDELV EVP+ E+      +   M         L VPL   + V  NW++ +
Sbjct: 928 QVHDELVLEVPDAEVERLKTDLPARMAGVA----QLSVPLLAEVGVGENWEQAH 977



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 103/261 (39%), Positives = 146/261 (55%), Gaps = 7/261 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS+++RA++A P L R   G P  AI G   ML +L  ++R    A+ 
Sbjct: 1   MTDTQTLLLVDGSSYLFRAYHALPDL-RNKAGEPTGAIHGMVGMLRRLRDDTRLHGGATL 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD P  TFR+++Y  YKANR + PE L+ Q+  +   TQA G P + + G EADD+
Sbjct: 60  GAVIFDAPGRTFRDDLYEYYKANRSQTPEALVAQIAPIHELTQALGWPLLVVPGIEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-----DIEHVIKKWGIP 175
           I T    A   G    I + DKDL QLV   T L +T+  + +     D   V  K+G+ 
Sbjct: 120 IGTLATRARAAGMRTVISTGDKDLAQLVDDETLLVNTMTRDGVPPTVMDAAGVRDKFGVD 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++    LTGD++DN+PG+  +G KTAA  L EYG+L+ IL +A  IK K   EN+  
Sbjct: 180 PGQIIDFLTLTGDAVDNVPGVDKVGPKTAAKWLNEYGSLDAILQHADEIKGKV-GENLRA 238

Query: 236 YAETARLSRKLVMLRTDVPIT 256
             +     R+LV +  D  ++
Sbjct: 239 ARDWLPRGRELVTVLRDADLS 259


>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
 gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
          Length = 912

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/611 (40%), Positives = 371/611 (60%), Gaps = 23/611 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I+   ++++W+QK+++    S    T ++    ++ + I++                
Sbjct: 315 YETILTEAELERWLQKIDSAVLTSIDTETTSLIPMQAQLVGISLCCEPGV--------AA 366

Query: 428 FIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
           +I ++ H  QD      L++E +L  +K + E+    K+G N+KYD  +   +G+++RG 
Sbjct: 367 YIPVA-HHYQDVP--QQLSRELVLEKMKPWLEDASKAKVGQNLKYDSHIFANHGVNLRGI 423

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHA 542
             D +L SYV +S RS HD+ S+A + L   + T +E+     S I  +++   +  E+A
Sbjct: 424 VHDTLLESYVFESHRS-HDMDSLALRHLNRKTITFQEVCGKGASQIGFEQVEIGRATEYA 482

Query: 543 IENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   + P +  +  L  VYE+++ P   V+ ++E  G+ ID DLL + S E
Sbjct: 483 AEDADITLQLHQRMWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQSNE 542

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + K +L +E+N Y+L+ + FNL+SPKQ+G+I F KLK P   KT +G   T  + L+++ 
Sbjct: 543 LGKRMLEIEQNAYELAEQPFNLNSPKQIGEIFFEKLKLPVVKKTPSGSPSTDEEVLQKL- 601

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE+R LSK+KSTY D LP  I+  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 602 AEDYPLPKVLLEYRGLSKLKSTYTDKLPKMIDPTTGRVHTNYAQAVAVTGRLASNDPNLQ 661

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+   G++IR AFI+ P   ++SADYSQIELRI+AHI+    + Q F +  DIHR  
Sbjct: 662 NIPIRNAEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENMLQAFADGEDIHRAT 721

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAEIFGV    V  + RR+AK INF +IYG+S F LA  L I RS A  YI+RYFHRF G
Sbjct: 722 AAEIFGVERRAVDSEQRRYAKVINFGLIYGMSAFGLAGNLGIERSAAQSYIERYFHRFAG 781

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+++T+   +  GYV+T+FGRR+   EINSP    R   ERAAINAP+QG+AAD+ +
Sbjct: 782 VKRYMDETRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGTAADLIK 841

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V   LE  KL +KM++Q+HDELV EVPE E+    + +   M         L+VP
Sbjct: 842 LAMIAVQGWLETEKLQSKMIMQVHDELVLEVPETELPLVREKLPELMRHVA----QLKVP 897

Query: 962 LKVNIKVSNNW 972
           L   + V NNW
Sbjct: 898 LIAEVGVGNNW 908



 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 153/256 (59%), Gaps = 5/256 (1%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVDGSS++YRAF+A P L R  +G P  AI G  NML +L ++      A + A +FD 
Sbjct: 1   MLVDGSSYLYRAFHAMPDL-RGPNGAPTGAIYGMINMLRRLRKDYPD---AEYMACVFDA 56

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              TFR+++Y +YKA R  +P+ L+ Q+  +  A +A G P + ++G EADD+I T    
Sbjct: 57  KGKTFRDDLYAEYKAQRASMPDDLVKQIEPIHEAVRAMGWPILMVEGIEADDVIGTLAVE 116

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           A K G    I + DKDL QLV+    L +T+  EK+D + VI K+G+PPE+++    L G
Sbjct: 117 AVKHGMDTVISTGDKDLAQLVNDRVMLINTMSNEKLDRDGVIAKFGVPPERIIDYLTLIG 176

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D++DN+PG+  +G KTA   L +YG L+ I+ +A+ IK     +N+    +    ++ L+
Sbjct: 177 DTVDNVPGVDKVGPKTAVKWLTQYGTLDGIVEHAADIK-GAVGDNLRRALDWLPQAKTLI 235

Query: 248 MLRTDVPITIPLEHLI 263
            ++TD  ++  ++ ++
Sbjct: 236 TVKTDCDLSGHMDTIV 251


>gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
 gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
          Length = 908

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 331/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDNLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ        I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A +  
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI-- 889

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 890 --LNLPLRANIETGKSWGE 906


>gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1]
          Length = 908

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 331/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ        I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A +  
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI-- 889

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 890 --LNLPLRANIETGKSWGE 906


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 334/1016 (32%), Positives = 503/1016 (49%), Gaps = 110/1016 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             LVDG S  YR+++A         R  +G+P +   GF   L +++   + E+IA    
Sbjct: 15  FILVDGHSLAYRSYFAFAKGRDGGLRTKEGIPTSVCFGFLKCLLEVMTTEQPEAIA---- 70

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E    YKA+RP  PE  +P L  ++     F +P     G+EADD++ 
Sbjct: 71  IAFDLNLPTFRHEADDTYKADRPGTPEDFIPDLKNLQELLTGFNLPIFTAPGYEADDVLG 130

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLY---DTVKEE-----KIDIEHVIKK 171
           T    A   G+ V I+S DKDL QL++P    T L    D +K       +  IE V  K
Sbjct: 131 TLAQKASAAGYKVKILSGDKDLFQLINPEQEITVLNFSPDALKRSTNSITEFSIEEVKAK 190

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P ++V  +AL GD  DNIPG+ GIG KTA  LL +YG+L  I    + IK   + +
Sbjct: 191 LGVLPTQIVDYKALCGDKSDNIPGVRGIGEKTAVQLLTKYGSLAEIYAAINEIKGAVQTK 250

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +    E A  S+ L  +  DVP+ I LE+  L   +   L   L+ LEF   + ++   
Sbjct: 251 -LAAGKEDAEKSKYLAKIVLDVPLEIKLENCKLTGFDTSLLTPILEKLEFKHFLGKI--- 306

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                        D       G   ET     T  +    S  +   +     Q P  L 
Sbjct: 307 -------------DELQQHFGGEIAETSTATPTDDEDEDISFFTPAETAAAILQQPASLI 353

Query: 352 LERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT----MDAFHSKP 406
             R                I+NT + +++ V+ LET  +    +  DT    ++   +  
Sbjct: 354 QPR----------------IINTPEKLKELVKLLETFTNPDIPVAWDTETSDLEPRDATL 397

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + I      Q D      E+ +I ++        G+N     + + L     +  + K  
Sbjct: 398 VGIGCCWGTQPD------ESAYIPIA-----HKFGENLSQDVVFAELSPILTSADYPKTF 446

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
            N K+D+LV    GI + G   D ML SYVL+   + H++  I+ ++L      ILKS +
Sbjct: 447 QNGKFDRLVFRCQGIKLAGIVFDTMLASYVLNPD-TPHNLNDISLRYLGL----ILKSYE 501

Query: 526 SSIP----IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVV 580
             +P    I  IS + V  +     +   QL   LR +L     LH +   +++P+  V+
Sbjct: 502 DLVPKGQTIADISIASVGYYCCLQVHATFQLVQKLREELEKFPALHKLLLEVEQPLEAVL 561

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++ME TG+ I+   L ++S ++  +L  LEE    ++GE FNL SPKQL  ILF KL   
Sbjct: 562 AEMEYTGVCINSAYLHELSQQLEIDLAKLEETATSIAGETFNLGSPKQLSVILFDKLGLS 621

Query: 641 S--GAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           +    K KTG + T    LE++    +   +  ++E+R LSK+KSTY D+LP  +   TQ
Sbjct: 622 TKYSRKIKTG-YSTDVATLEKLQEVDETGFVDAMMEYRTLSKLKSTYVDALPALVRPDTQ 680

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+HT ++   T TGRL+S  PNLQNIPI+T   ++IR+AF+      + +ADYSQIELRI
Sbjct: 681 RLHTNFNQTVTATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGYLMAAADYSQIELRI 740

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH+++   L Q ++ + DIH + A  +F      ++   RR AKTINF +IYG+   R 
Sbjct: 741 LAHLSQEPILLQAYQQNEDIHTVTARLVF--EKSDITSDERRIAKTINFGVIYGMGSLRF 798

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS--- 874
           +    I +S A ++IKR+  R+P +  Y+E  K      GYVETI GRR + D  N    
Sbjct: 799 SRSTGIDKSIANEFIKRFNERYPQVFAYLEGVKKQAISQGYVETILGRRRYVDFKNDSLR 858

Query: 875 ------PK----SSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
                 P+    S ++N+        R+A NAPIQGS+ADI + AMI +H+ L+ ++   
Sbjct: 859 KLKNSKPEDIDLSKLKNLGPEDAGLLRSAANAPIQGSSADIIKIAMIRMHEVLQKYQ--A 916

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++LLQ+HDELVFEVP +E       I   ME A    + L VPL V+++  +NW E
Sbjct: 917 RLLLQVHDELVFEVPPQEWEELQPQIKSVMENA----VTLSVPLLVDVRAGDNWME 968


>gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
 gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
          Length = 908

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 332/979 (33%), Positives = 504/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPKHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ        I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A    
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 889 -TLNLPLRANIETGKSWGE 906


>gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
 gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
          Length = 988

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 329/1029 (31%), Positives = 523/1029 (50%), Gaps = 116/1029 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           + LVDG S  +R+++A         R   G+P N   GF   L  ++   + ++IA    
Sbjct: 13  IILVDGHSLAFRSYFAFAKSRAGGLRTKSGIPTNVCFGFIQCLLDVIAKEQPQAIA---- 68

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD  A TFR+E   +YKANR   PE  +P L  +    +A  I  I   G+EADDI+ 
Sbjct: 69  IAFDLAAPTFRHEADSNYKANRADTPEDFIPDLFNLYDLLKALNIQIITQPGYEADDILG 128

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEH-----VIKK 171
           T    A   G+ V I+S D+DL QL+     +       + +K     I+      V +K
Sbjct: 129 TLAETAVCSGYRVKILSGDRDLFQLIDENKGITVLNFTPEALKSSANGIKEFHTLDVKEK 188

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P ++V  +AL GD+ DNIPG+ GIG KTA  LL  Y +L  I  N ++I     ++
Sbjct: 189 LGVLPTQVVDFKALCGDTSDNIPGVKGIGEKTAVKLLNTYKSLTEIYANINKIT-GTNQQ 247

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            ++   E A  S+ L  + TDVPITI ++   L+  +  ++I  L+ LEF K ++R+   
Sbjct: 248 KLIAGQENALHSQYLAKIVTDVPITIKIQDCDLKGFDTAKIIPILEKLEFKKFLDRIQ-- 305

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ------ 345
                                      EI++      SQ +SL+ +T+K N++       
Sbjct: 306 ---------------------------EIEK--KFSHSQSASLTGETNKSNTDNLAPDDD 336

Query: 346 -----TPQKLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT- 398
                    +  ++ Q L Q   +++   +I++T++ + + V  LE        +  DT 
Sbjct: 337 LWFFSAADTVNAQKSQTLKQG--SSEIKVRIIDTEEKLGELVNILEQHKDPQNPVAWDTE 394

Query: 399 ---MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
              +D  ++  + I       ++D ++      I L  H    +  KN     +LS L K
Sbjct: 395 TTDLDPRNANLVGIGCCWGMGENDVAY------IPLG-HNITTNLEKNLQLNTVLSTLDK 447

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
              +  + K   N K+D+L+    G+++ G   D ML SY+L+   + H++  +A ++L 
Sbjct: 448 ILASRDYPKTFQNAKFDRLIFKYQGVTLDGVIFDPMLASYLLNPDHT-HNLTDLALRYLG 506

Query: 515 YTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL---LRPKL-IVEKLLH 567
               E   I++      P   I+D  +   A      +   W L   LR +L  +  L  
Sbjct: 507 LQLTEYDHIVQKSGKKEPQKTIADISIHTVANYCGKQVYATWQLVGKLREELNKIPALFK 566

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++ME  G+ I+   L+Q+S  I  +L +LE     ++GEKFNL SPK
Sbjct: 567 LLVDVEQPLEVVLAEMEHRGVIINSAYLQQLSQYIESDLATLEIKATKIAGEKFNLGSPK 626

Query: 628 QLGDILFTKLKFPS--GAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTY 684
           QL  ILF KL   +    K  TG + T A  LE++    +   +  I+E+R L+K+KSTY
Sbjct: 627 QLSYILFEKLGLSTKYSRKISTG-YSTDAATLEKLQEVDETGFVDAIIEYRTLAKLKSTY 685

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D+LP  +N +TQR+HT ++  +T TGRL+S  PNLQNIPI+T   ++IR+AF+      
Sbjct: 686 VDALPELVNHKTQRIHTSFNQTATATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWL 745

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           +++ADYSQIELRILAH+++   L Q + N+ DIH + A  +F  + E V+ + RR AKTI
Sbjct: 746 MVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLF--DKEDVTSEERRFAKTI 803

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF +IYG+   + +    + ++ A ++I+++  R+P +  Y+E  K      GYVETI G
Sbjct: 804 NFGVIYGMGVLKFSRSTGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILG 863

Query: 865 RRIHYDEINSP-------------KSSIRNINE------RAAINAPIQGSAADITRRAMI 905
           RR ++D  N                + ++N+        R+A NAPIQGS+ADI + AM+
Sbjct: 864 RRRYFDFTNKTLREFKGKDLQEIELNKLKNLGPYDAGLLRSAANAPIQGSSADIIKIAMV 923

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            +H+ L  ++  TK+LLQ+HDELVFEVP  E       I   ME A    + L VPL V+
Sbjct: 924 RLHQVLRPYQ--TKLLLQVHDELVFEVPPSEWDELQLQIKSVMENA----MKLSVPLVVD 977

Query: 966 IKVSNNWQE 974
           + V  NW E
Sbjct: 978 VHVGENWME 986


>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
 gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I
 gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
          Length = 908

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 331/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ     +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQ-----HESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A    
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 889 -TLNLPLRANIETGKSWGE 906


>gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
 gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
          Length = 976

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 321/1024 (31%), Positives = 528/1024 (51%), Gaps = 118/1024 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59
           L LVDG S  +R+FYA    S+  DG        P +   GF   L    +N   E +  
Sbjct: 13  LLLVDGHSLAFRSFYA---FSKGIDGGLTTKEGFPTSVTYGFLKSLLDNCKNISPEGVC- 68

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118
              + FD    TFR+E+ P+YKANR   P++    +  + +   ++  +P  +  G+EAD
Sbjct: 69  ---ITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYEAD 125

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168
           D++ T    A  +G+ V I+S D+DL QLV     +Y           +     ++   V
Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I     +I+Q K
Sbjct: 186 KEKLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKIQQNK 245

Query: 229 RR-----------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
            +           E +      A LSR L  + T+VP+ +      L++ N   L   LK
Sbjct: 246 DKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSESLK 304

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
            LE + L+ ++                  N+T +KG       D++   K          
Sbjct: 305 KLELSTLLRQIDI---------------FNSTFSKG-----GFDKNNVAK---------- 334

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKIIT 396
                 E+ P+      L+  S+  I   + T + + + + + +Q+L+      S    T
Sbjct: 335 ----EEEKAPKVAGNNELEN-SENKIPKINVTVVNDFELLDKLIQRLDKTNQIVSLDTET 389

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           ++++   ++ + I +   ++ DD        +I L  H ++  T      +++ S L+ +
Sbjct: 390 NSLNPIDAELVGIGLCLGEENDDL------FYIPLG-HQTKKETPDQLSIEDVFSKLRNW 442

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            E+    K   N K+D+ +   +G+ ++G   D +L  Y+L++ +  H ++ I+ +   +
Sbjct: 443 IEDPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLNN-QEKHGLSEISFRLFGF 501

Query: 516 ---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVYE 570
              + KE +   K    +D I ++ +  +   +  +  ++  + +     EK  L+ ++E
Sbjct: 502 KPPSFKETVGKNKDFSFVD-IDEASI--YCGYDVFLTFKIVKIFKESFSKEKDELIKLFE 558

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+L+ E FNLSSPKQLG
Sbjct: 559 EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELADESFNLSSPKQLG 618

Query: 631 DILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           +ILF KL        KTKTG W T A  LE++   ++ II+++++ R LSK+ STY D+L
Sbjct: 619 EILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQHLIKHRTLSKLLSTYIDAL 676

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           PN IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SA
Sbjct: 677 PNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSA 736

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRILAH+A    L   F  + DIH + A  IF    E++S   RR  KTINF +
Sbjct: 737 DYSQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGV 794

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+  
Sbjct: 795 IYGMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKRE 854

Query: 869 YD---------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           +                EI+   + ++ +   + RAA NAPIQGS+ADI + AM+ ++K 
Sbjct: 855 FKFDKNGLGRLLGKDPYEIDLQAARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKK 914

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
             +  +  KMLLQ+HDEL+FEV  + +   ++++  +ME      + L VPL V++ + +
Sbjct: 915 FTEMNVPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMEDC----VKLNVPLLVDVGIGD 970

Query: 971 NWQE 974
           NW E
Sbjct: 971 NWME 974


>gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
 gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
          Length = 908

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 330/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ        I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A +  
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI-- 889

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 890 --LNLPLRANIETGKSWGE 906


>gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9]
 gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9]
          Length = 988

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 333/1020 (32%), Positives = 526/1020 (51%), Gaps = 98/1020 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           + LVDG S  +R+++A         R   G+P N   GF   L  ++   + ++IA    
Sbjct: 13  IILVDGHSLAFRSYFAFAKSRAGGLRTKSGIPTNVCFGFMQCLLDVIVKEQPQAIA---- 68

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD  A TFR+E   +YKANR   PE  +P L  +    +A  I  I   G+EADDI+ 
Sbjct: 69  VAFDLAAPTFRHEADSNYKANRADTPEDFIPDLVNLYDLLEALNIQVITQPGYEADDILG 128

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEH-----VIKK 171
           T    +   G+ V I+S D+DL QL+     +       + +K     I+      V +K
Sbjct: 129 TLAETSVCSGYRVKILSGDRDLFQLIDENKGISVLNFTPEALKSSSNGIKEFHTLDVKEK 188

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P ++V  +AL GD+ DNIPG+ GIG KTA  LL  Y +L  I  N ++I     ++
Sbjct: 189 LGVLPTQVVDFKALCGDTSDNIPGVKGIGEKTAVKLLNIYKSLTEIYANINKIT-GANQQ 247

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            ++   E+A  S+ L  + TDVPITI ++   L+  +  ++I  L+ LEF K ++++   
Sbjct: 248 KLIAGQESAFHSQYLAKIVTDVPITIKIQDCHLKGFDTAKIIPILEKLEFKKFLDKIQ-- 305

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                  IE   +   +T   G    +  +  +      F S +D    +N++++     
Sbjct: 306 ------EIEKKFIHSQSTSLTGETNNSNTNNLSLDDDLWFFSAAD---TVNAQKS----- 351

Query: 352 LERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT----MDAFHSKP 406
               Q L Q   +++   +I++T+D +++ V  LE        +  DT    +D  ++  
Sbjct: 352 ----QTLKQG--SSEIKVRIIDTEDKLRELVNILEQHKDPENPVAWDTETTDLDPRNANL 405

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + I       ++D ++      I L  H    +  KN     +LS L+K   +  + K  
Sbjct: 406 VGIGCCWGTGENDVAY------IPLG-HNITSNLEKNLPLNTVLSTLEKILVSGDYPKTF 458

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY--------TR 517
            N K+D+L+    GI++ G   D ML SYVL+  R+ H++  +A ++L           +
Sbjct: 459 QNAKFDRLIFKYQGITLDGVVFDPMLASYVLNPDRT-HNLTDLALRYLGLQLTEYDDIVQ 517

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPM 576
           K   K R+ +I    IS   V  +  +      QL   LR +L  +  L  +   +++P+
Sbjct: 518 KSGKKERQKTIA--DISIHTVANYCGKQVYATWQLVGKLREELNEIPALFKLLVDVEQPL 575

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
             V+++ME  G+ I+   L+Q+S  I  +L +LE     ++GEKFNL SPKQL  ILF K
Sbjct: 576 EVVLAEMEHRGVIINSAYLQQLSQHIESDLATLEIKATKIAGEKFNLGSPKQLSYILFEK 635

Query: 637 LKFPS--GAKTKTGQWKTTAQDLEQINCGDNP-IIKNILEWRQLSKIKSTYADSLPNHIN 693
           L   +    K  TG + T A  LE++   D    +  I+E+R L+K+KSTY D+LP  +N
Sbjct: 636 LGLSTKYSRKISTG-YSTDAATLEKLQEVDQTGFVDAIIEYRTLAKLKSTYVDALPELVN 694

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            +TQR+HT ++  +T TGRL+S  PNLQNIPI+T   ++IR+AF+      +++ADYSQI
Sbjct: 695 HKTQRIHTNFNQTATATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMVAADYSQI 754

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRILAH+++   L Q + N+ DIH + A  +F  + E V+ + RR AKTINF +IYG+ 
Sbjct: 755 ELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLF--DKEDVTSEERRFAKTINFGVIYGMG 812

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             + +    + ++ A ++I+++  R+P +  Y+E  K      GYVETI GRR ++D  N
Sbjct: 813 VLKFSRSTGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGRRRYFDFTN 872

Query: 874 SPKSSIRN-------INE------------RAAINAPIQGSAADITRRAMISVHKSLEDH 914
                ++        +N+            R+A NAPIQGS+ADI + AM+ +H+ L  +
Sbjct: 873 KTLQQLKGKDLQEIELNKLKNLGPYDAGLLRSAANAPIQGSSADIIKIAMVRLHEVLRRY 932

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   K+LLQ+HDELVFEVP  E       I   ME A    + L VPL V+I V  NW E
Sbjct: 933 Q--AKLLLQVHDELVFEVPPSEWDELQLQIKSVMENA----MKLSVPLVVDIHVGENWME 986


>gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 976

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 322/1025 (31%), Positives = 529/1025 (51%), Gaps = 120/1025 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59
           L LVDG S  +R+FYA    S+  DG        P +   GF   L  LL N +  S   
Sbjct: 13  LLLVDGHSLAFRSFYA---FSKGIDGGLTTKEGFPTSVTYGF---LKSLLDNCKNIS-PQ 65

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118
              + FD    TFR+E+ P+YKANR   P++    +  + +   ++  +P  +  G+EAD
Sbjct: 66  GVCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYEAD 125

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168
           D++ T    A  +G+ V I+S D+DL QLV     +Y           +     ++   V
Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I     +I+Q  
Sbjct: 186 KEKLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYKALDKIQQNN 245

Query: 229 RR-----------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
            +           E +      A LSR L  + T+VP+ +      L++ N   L   LK
Sbjct: 246 DKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSESLK 304

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS-SLSD 336
            LE + L+ ++                  N+T +KG       D++   K  + +  +S 
Sbjct: 305 KLELSTLLRQIDI---------------FNSTFSKG-----GFDKNNVAKEEEKAPKVSG 344

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKII 395
                NSE    K+                + T + + + + + +Q+L+      S    
Sbjct: 345 NNELENSENKIPKI----------------NVTVVNDFELLDKLIQRLDKTNQIVSLDTE 388

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
           T++++   ++ + I +   ++ DD        +I L  H ++  T      +++ S L+ 
Sbjct: 389 TNSLNPIDAELVGIGLCLGEENDDL------FYIPLG-HQTKKETPNQLSIEDVFSKLRN 441

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514
           + E+    K   N K+D+ +   +G+ ++G   D +L  Y+L++ +  H ++ I+ +   
Sbjct: 442 WIEDPRKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLNN-QEKHGLSEISFRLFG 500

Query: 515 Y---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVY 569
           +   + KE +   K    +D I ++ +  +   +  +  ++  + + +   EK  L+ ++
Sbjct: 501 FKPPSFKETVGKNKDFSFVD-IGEASI--YCGYDVFLTFKIVKIFKERFSKEKDELIKLF 557

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
           E ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+L+ E FNLSSPKQL
Sbjct: 558 EEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEENFNLSSPKQL 617

Query: 630 GDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           G+ILF KL        KTKTG W T A  LE++   ++ II+++++ R LSK+ STY D+
Sbjct: 618 GEILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQHLIKHRTLSKLLSTYIDA 675

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LPN IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+S
Sbjct: 676 LPNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLS 735

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELRILAH+A    L   F  + DIH + A  IF    E++S + RR  KTINF 
Sbjct: 736 ADYSQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSEERRVGKTINFG 793

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           +IYG+   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+ 
Sbjct: 794 VIYGMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKR 853

Query: 868 HY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
            +                  D  ++ ++ +   + RAA NAPIQGS+ADI + AM+ ++K
Sbjct: 854 EFKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNK 913

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
              +  +  KMLLQ+HDEL+FEV ++ +   ++++  +ME      + L VPL V+I   
Sbjct: 914 KFIEMNVPAKMLLQVHDELLFEVEQDSLEITTKLVKKTMEDC----VKLNVPLLVDIGTG 969

Query: 970 NNWQE 974
           +NW E
Sbjct: 970 DNWME 974


>gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
 gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
          Length = 908

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 330/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPKHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ        I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A +  
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI-- 889

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 890 --LNLPLRANIETGKSWGE 906


>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna
          Length = 605

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/617 (40%), Positives = 381/617 (61%), Gaps = 20/617 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++       
Sbjct: 2   ISYDNYVTILDEETLKAWIAKLEKAPVFAFATATDSLDNISANLVGLSFA-IEPGVAAYI 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L  YGI 
Sbjct: 61  PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I+  + 
Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L  
Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + L
Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +
Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DI
Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF 
Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+AA
Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C     
Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V +    NW +
Sbjct: 587 LDVPLLVEVGSGENWDQ 603


>gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
 gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
          Length = 908

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 331/979 (33%), Positives = 504/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPKHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +        I++  E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMGNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ        I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A    
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 889 -TLNLPLRANIETGKSWGE 906


>gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
 gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
          Length = 911

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/589 (39%), Positives = 362/589 (61%), Gaps = 20/589 (3%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F   T ++DA  ++ + ++ +         F+  T +     HT  D+        E L
Sbjct: 336 AFDTETTSLDAMRAEIVGMSFA---------FEPGTAWYLPLAHTGPDAD-PQLPRAETL 385

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
             LK + E+E   K+GH++KYD+ VL  +GI++RG  +D +L S+ LD+G + HD+ S+A
Sbjct: 386 ERLKPWLESERHGKLGHHLKYDRNVLGNHGITLRGIVDDTLLESFCLDAGANRHDLDSLA 445

Query: 510 QKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKL 565
           ++ L Y     +++       IP  ++      ++A E++++ LQL  + +P+L   E  
Sbjct: 446 ERHLDYKTTHYEDVAGKGVKQIPFAEVDIGIATDYAGEDADICLQLDAVFQPRLQAAEGP 505

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             VY  ++ P++ V++ +E  G+++D D L + S E+   +  +E   ++ +G +FNL S
Sbjct: 506 AFVYREIEMPLVPVLADIERVGVKVDPDRLGEQSQELLAEMERIEREAFEEAGGEFNLGS 565

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQ+ +ILF +L  P   +T  GQ  T    LEQ+   D  + + ILE R LSK++STY 
Sbjct: 566 PKQIQEILFERLGLPVLRRTPKGQPSTAEDVLEQM-ADDYALPRLILEHRGLSKLRSTYT 624

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           ++LP  I+  T RVHT Y  A   TGRL+S EPNLQNIP++T+ G++IRRAFI+    +L
Sbjct: 625 ETLPRRIHPETGRVHTSYHQAGAATGRLSSSEPNLQNIPVRTEAGRRIRRAFIAEEGHQL 684

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ++ADYSQIELRI+AH+++   L + F    DIHR  AAE+FG++ E+VS   RR AK IN
Sbjct: 685 LAADYSQIELRIMAHLSQDAGLLKAFAEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAIN 744

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F +IYG+S + LA  L I + EA +YI RYF R+PG+H+Y+E+ +   R+NGYVET+FGR
Sbjct: 745 FGLIYGMSAWGLARNLGIEQGEAREYIDRYFSRYPGVHDYMERARASGRENGYVETLFGR 804

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R++  EINS   + R  +ER AINAP+QG+AADI +RAM+ V   LED  +  +M++Q+H
Sbjct: 805 RLYLPEINSRNGARRQQSERVAINAPMQGTAADIIKRAMVRVAHDLEDTGIDARMIMQVH 864

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DELVFEV +  +   + ++  +M  A     +L V L V++ V  NW +
Sbjct: 865 DELVFEVADAAVEDLTTLVRKAMSGAA----DLDVELVVDVGVGANWDD 909



 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 116/295 (39%), Positives = 171/295 (57%), Gaps = 7/295 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS+++RAF+A P L+   DG P  A+ G  NML KL    R +    H AV+FD
Sbjct: 17  LVLVDGSSYLFRAFHALPPLTAP-DGAPTGAMIGVANMLRKL----RADYGPEHMAVVFD 71

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IYP+YKA RP +P+ L  Q+  +    +A G+P + ++G EADD+IAT   
Sbjct: 72  AKGKTFRDDIYPEYKATRPPMPDELAAQIEPLHELVRAMGLPLLCVEGVEADDVIATLAD 131

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G  V I + DKDL QLV+    L +T+    +D E V +K+G+ PE++V   AL 
Sbjct: 132 QAAAAGHDVVISTGDKDLAQLVNDRITLVNTMSGVTLDREGVQEKFGVAPEQIVDYLALM 191

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DNIPG+  +G KTAA  + +YG+L+ IL  A  I  K   EN+   AE    SR+L
Sbjct: 192 GDSVDNIPGVDKVGPKTAAKWIAKYGDLDTILEQADDIGGKI-GENLRAAAERLPTSREL 250

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           + ++ DV +      L + + +  RL+  ++   FT+    +  + D +AA+  P
Sbjct: 251 ITVKRDVELDAGPNDLNIREPDHERLLEMVRRYGFTRWRAELEGSED-EAADGNP 304


>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 937

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/618 (38%), Positives = 371/618 (60%), Gaps = 25/618 (4%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P  +  Y  ++  +  + W  ++E     +    TD++D   ++ + ++ S         
Sbjct: 334 PAVDKRYETVLAREAFEAWRARIEAADLVALDTETDSLDGMRARIVGLSFSVQ------- 386

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
              E  +I L+ HT   +  +  L  E+L+ LK + E+    K+G N+KYD  V   +GI
Sbjct: 387 -PYEACYIPLA-HTYPGAPDQLPL-DEVLAALKSWLEDGSRAKLGQNVKYDTHVFANHGI 443

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIA-----QKWLSYTRKEILKSRKSSIPIDKISD 535
           ++RG+  D +L SYVL++    H + S+A     +K LSY  +++       IP  ++  
Sbjct: 444 AVRGYVHDTLLQSYVLEA-HKPHSLESLASRHLDRKGLSY--EDVAGKGAQQIPFAQVEL 500

Query: 536 SQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           ++  E++ E+S++ L +  +L P+L    +L  VYER++ P   ++ ++E  G+ ID  L
Sbjct: 501 TRATEYSGEDSDMTLDVHRVLWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDSAL 560

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L + SA++++ +++LE+  + L+G+ FNL SPKQ+G+ILF KL  P+  KT +G   T  
Sbjct: 561 LARQSADLAQRMVALEQEAHALAGQPFNLGSPKQIGEILFNKLGIPAKKKTASGAPSTDE 620

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L ++   D P+   +LE R L+K+K TY D LP  +N  T RVHT Y+ A  +TGRLA
Sbjct: 621 EVLAEL-AADYPLPAKLLEHRSLAKLKGTYTDKLPLMVNAATGRVHTNYAQAVAVTGRLA 679

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T  G+++R AFI+PP   ++SADYSQIELRI+AHI++   L + F   
Sbjct: 680 SNDPNLQNIPIRTPEGRRVREAFIAPPGHVILSADYSQIELRIMAHISEDPGLLKAFAEG 739

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LD+HR  A+E+F V + +VS + RR+AK INF +IYG+  F LA+ L I +  A DYI R
Sbjct: 740 LDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMGAFGLASNLGIEQKAAKDYIDR 799

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+  Y+++T+   ++ GYVET+FGRRI+  EIN      R   ER AINAP+QG
Sbjct: 800 YFARFAGVKRYMDETRARAKELGYVETLFGRRIYLPEINGGNGPRRTGAERQAINAPMQG 859

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + AMI+V  +L+  + AT M++Q+HDELVFEVPE E+  A   +   M      
Sbjct: 860 TAADLIKLAMIAVQAALDAQQRATCMVMQVHDELVFEVPEAELDWARTAVPELMAGVA-- 917

Query: 955 KINLRVPLKVNIKVSNNW 972
              L+VPL   + V  NW
Sbjct: 918 --ELKVPLLAEVGVGANW 933



 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/250 (40%), Positives = 148/250 (59%), Gaps = 6/250 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G   ML KL    R+E  ++H A +FD
Sbjct: 9   LLLVDGSSYLYRAYHALPDL-RNPAGEPTGAVRGMVAMLKKL----REEFPSAHAACVFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP+YKANR  +PE L  Q+  +       G P +EI G EADD+I T   
Sbjct: 64  AKGKTFRDDWYPEYKANRASMPEDLARQIAPIHAVVTLLGWPVLEIPGIEADDVIGTLAR 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G  V + + DKDL QLV     L +T+  E++D+  V +K+G+PPE++V    L 
Sbjct: 124 AAAARGQRVIVSTGDKDLAQLVDAHVTLINTMSGERLDVAGVTEKFGVPPERIVDYLTLV 183

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTAA  + E+G+L+ ++  A  IK     EN+ +  +   L R+L
Sbjct: 184 GDAVDNVPGVEKVGPKTAAKWIAEHGSLDGVMAAADAIKGVA-GENLRKALDWLPLGRRL 242

Query: 247 VMLRTDVPIT 256
           V ++TD  ++
Sbjct: 243 VTVKTDCDLS 252


>gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40]
          Length = 908

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 330/979 (33%), Positives = 504/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      FE+   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ        I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A    
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 889 -TLNLPLRANIETGKSWGE 906


>gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v]
          Length = 605

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/617 (40%), Positives = 382/617 (61%), Gaps = 20/617 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ + ++       
Sbjct: 2   ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L  YGI 
Sbjct: 61  PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I+  + 
Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L  
Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + L
Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +
Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DI
Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF 
Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+AA
Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C     
Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKI-HQLMENC---TR 586

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V +    NW +
Sbjct: 587 LDVPLLVEVGSGENWDQ 603


>gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
           Manganese
 gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
           Only
 gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
           Manganese
 gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
 gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
           And Europium (Iii) Ion
 gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Short Dna Fragment Carrying 2'-0-
           Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
 gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna Tetramer Carrying
           2'-O-(3-Aminopropyl)- Rna Modification
           5'-D(Tt)-Ap(U)-D(T)-3'
 gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431]
 gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G]
 gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180]
 gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357]
 gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74]
          Length = 605

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/617 (40%), Positives = 381/617 (61%), Gaps = 20/617 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++       
Sbjct: 2   ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L  YGI 
Sbjct: 61  PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I+  + 
Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L  
Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + L
Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +
Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DI
Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF 
Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+AA
Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C     
Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V +    NW +
Sbjct: 587 LDVPLLVEVGSGENWDQ 603


>gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
          Length = 605

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/617 (40%), Positives = 381/617 (61%), Gaps = 20/617 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++       
Sbjct: 2   ISYDNYVTILDEETLKAWIAKLEKAPVFAFATETDSLDNISANLVGLSFA-IEPGVAAYI 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L  YGI 
Sbjct: 61  PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I+  + 
Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L  
Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + L
Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +
Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DI
Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF 
Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+AA
Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C     
Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V +    NW +
Sbjct: 587 LDVPLLVEVGSGENWDQ 603


>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 896

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/639 (38%), Positives = 382/639 (59%), Gaps = 33/639 (5%)

Query: 349 KLFLERLQKLSQYPINND---SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           + +LE L +  + P+      SY  I   +++ +W+Q+LE     +F   T +++   +K
Sbjct: 276 RAWLEDLLEEGEAPVVEQLETSYEIITEQQELDRWLQQLEAAELFAFDTETTSLNYMEAK 335

Query: 406 PIAIAISTLDQKDDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENE 460
            + +           SF +E     ++ L+     D  G    L ++ +L+ +K   E+ 
Sbjct: 336 VVGV-----------SFAIEAGKAAYVPLA----HDYLGAPEQLDRDAVLAQMKPLLEDP 380

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR-- 517
           +  K+G N+KYD  VL  +GI+++G + D ML SYVLDS  + HD+ S+A K+L      
Sbjct: 381 NQAKVGQNLKYDASVLANHGIALKGIDYDTMLESYVLDSTATRHDMDSLALKYLGQNTIH 440

Query: 518 -KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKP 575
            ++I       +  +++   +   +A E++++ L+L   L PKL  +  LL V+  ++ P
Sbjct: 441 FEDIAGKGAKQLTFNQVKVEEAGPYAAEDADITLRLHQALWPKLEELSSLLPVFRDIELP 500

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           ++ V+S++E  G  +  ++L Q S E+   L  L+   Y+L+G++FNL SPKQLG+ILF 
Sbjct: 501 LVPVLSKIERQGALLSCEMLHQQSTELGLRLEELKSAAYELAGQEFNLGSPKQLGEILFE 560

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL+ P   KT  G   T  + L ++   D P+ K +LE+R LSK+KSTY D LP  +N +
Sbjct: 561 KLELPIIKKTPKGAPSTAEEVLVELAL-DYPLPKLLLEYRSLSKLKSTYTDKLPGMVNPQ 619

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT Y  A   TGRL+S +PNLQNIPI+T+ G++IR+AFI+P   ++++ADYSQIEL
Sbjct: 620 TGRVHTSYHQAVAATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAPQGFRIVAADYSQIEL 679

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH++    L   F+   D+HR  AAE+F V++++VS   RR AK INF +IYG+S F
Sbjct: 680 RIMAHLSDDPSLLTAFKEGQDVHRATAAEVFEVSLDEVSGDQRRKAKAINFGLIYGMSAF 739

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA QL + R EA +YI RYF R+PG+ +Y+++T+   ++ G+VET+FGRR++  EIN+ 
Sbjct: 740 GLAKQLHLGRHEAQEYIDRYFERYPGVAQYMDRTRAIAKEQGFVETLFGRRLYLPEINAR 799

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
                   ER AINAP+QGSAADI +RAM+SV + LE      +M++Q+HDELV EV  +
Sbjct: 800 NKMRVQAAERTAINAPMQGSAADIIKRAMLSVDQWLEQGDANARMIMQVHDELVLEVAND 859

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+   S  +   M  A      L VPL V   V +NW E
Sbjct: 860 EVDAVSNQVCRLMSGAA----ELAVPLLVEAGVGDNWDE 894



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 158/280 (56%), Gaps = 11/280 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVDGSS++YRAF+A P L+    G    A+ G  NML +LL++  +  +      +FD 
Sbjct: 1   MLVDGSSYVYRAFHALPPLTNSK-GQATGAVKGVINMLRRLLKDYPESPVVG----VFDA 55

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P + ++G EADD+I T    
Sbjct: 56  KGKTFRDDLYPEYKANRPSMPDELREQIVPIHSIVRAMGLPFLCVEGVEADDVIGTLARQ 115

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           A ++G +V I + DKD+ QLV   T L +T+ +  +D   V +K+GIPP  ++   AL G
Sbjct: 116 ASEQGRSVVISTGDKDMAQLVDKHTTLVNTMTDTVMDEAGVEQKFGIPPSLIIDFLALMG 175

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETAR 241
           D +DNIPG+ G+G KTA  LLQ  G+L++I  +  ++ +      K     +      A 
Sbjct: 176 DKVDNIPGVAGVGEKTALGLLQGIGSLDDIYASLDKVAELSFRGAKTMAPKLEAEKANAY 235

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           +S +L  ++TDV +    E L   + +   L+ +   +EF
Sbjct: 236 MSYELATIKTDVELDQRPEALANAEPDREALVEWYTQMEF 275


>gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
           Polymerase I Complexed With DTMP
 gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
           Polymerase I Complexed With Deoxynucleoside Triphosphate
           And Pyrophosphate
          Length = 605

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/617 (40%), Positives = 381/617 (61%), Gaps = 20/617 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++       
Sbjct: 2   ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L  YGI 
Sbjct: 61  PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I+  + 
Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L  
Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + L
Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +
Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DI
Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF 
Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+AA
Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C     
Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V +    NW +
Sbjct: 587 LDVPLLVEVGSGENWDQ 603


>gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74]
          Length = 605

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/617 (40%), Positives = 381/617 (61%), Gaps = 20/617 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++       
Sbjct: 2   ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L  YGI 
Sbjct: 61  PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I+  + 
Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQIALEEA 171

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L  
Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + L
Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +
Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DI
Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF 
Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+AA
Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C     
Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V +    NW +
Sbjct: 587 LDVPLLVEVGSGENWDQ 603


>gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
 gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
          Length = 908

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 329/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  
Sbjct: 3   ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++A
Sbjct: 57  ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++ 
Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    E
Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    EN                       +DQ S    E T        L  ++ 
Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS        
Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365

Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            FK  E  +I +      ++ GK  + K  I+      F++   + IG N K+D  +L  
Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFKSNPKI-IGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL  K P   K  +   K    
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             EQ        I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S
Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           + PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ 
Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  Y
Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGS
Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A +  
Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI-- 889

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L +PL+ NI+   +W E
Sbjct: 890 --LNLPLRANIETGKSWGE 906


>gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
 gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
          Length = 985

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 324/1023 (31%), Positives = 518/1023 (50%), Gaps = 94/1023 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
           QK+  L LVDG S  +R+FYA        L+ K +GLP +   GF   L  LL N R  S
Sbjct: 5   QKKPTLLLVDGHSLAFRSFYAFSKGGEGGLATK-EGLPTSVTYGF---LKSLLDNCRAIS 60

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGF 115
                 + FD P  TFR++  P+YKANR   P +    L  +++  +    +      G+
Sbjct: 61  -PQGITIAFDTPEPTFRHKTDPNYKANRDIAPPIFFQDLEQLQIILEKDLNLSICTAPGY 119

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---------YDTVKEEKIDIE 166
           EADD++ T    A   G+ V I+S D+DL QLV     +         Y       +  E
Sbjct: 120 EADDVLGTLANKAADNGWIVRILSGDRDLFQLVDDERNIAIMYMGGGPYGKSGNPTLINE 179

Query: 167 HVIK-KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
             +K K GI P K++  +ALTGDS DNIPG+ G+G KTA  LL E  +L+ +  +   ++
Sbjct: 180 AGVKTKLGIVPTKVIDFKALTGDSSDNIPGVKGVGPKTAINLLNENKDLDGVFASLELLE 239

Query: 226 QKKRRE-----------NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274
            +  +             + +  + A LSR L  +  +VPI  PL    L + N   L +
Sbjct: 240 SQGEKAYKGAIKGALKAKLKQGKDNAYLSRHLAEILVEVPIE-PLPSFKLSEINRENLEN 298

Query: 275 FLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334
            L+ LE   L+ ++                 + T    G +      +    K+S  SS 
Sbjct: 299 SLQKLELNSLVRQMPAF--------------VATFSPGGFSAHK---KTINTKSSNTSSK 341

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
           + Q    N E  P +   E +  +    I+N+S   ++    I+  +Q  + I   +   
Sbjct: 342 NQQ----NRENLPDEK--EGIPTIMPQIISNNSELSVL----IENLLQLDDPIQPVAIDT 391

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T +++ F S+ + I +   ++ +  ++ +    I   +   Q S  +  L  +++  L 
Sbjct: 392 ETTSLNPFQSELVGIGLCWGERPEQIAY-IPLGHITEDLFEDQSSNLQLPLI-DVIKGLS 449

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            +  +    K+  N KYD+L+  +YGI + G   D +L  Y+ D     H + ++A++  
Sbjct: 450 PWLGSSEHPKVLQNAKYDRLIFLQYGIPLEGVIMDTLLADYLCDV-THRHSLEAMAKREF 508

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYER 571
            +T     +          +S S    +   +  +  +L+ L +  L  + +KL+ + E+
Sbjct: 509 GFTPTNFNEIVGKDETFKNVSISTASLYCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEK 568

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +++P+  +++ ME  GI+ID   LK++S E++K L ++E++ Y ++   FNLSSPKQLG+
Sbjct: 569 VEQPLEPILADMEARGIRIDIPYLKELSIELNKALKNIEKSAYKIAKTDFNLSSPKQLGE 628

Query: 632 ILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           +LF +L        +TKTG W T A  LE++  GDNPI+  ++E R LSK+ STY ++LP
Sbjct: 629 VLFEQLGLDKKKSRRTKTG-WSTDANVLERLQ-GDNPIVPLVIEHRTLSKLLSTYVEALP 686

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
             +  +T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+     +L+SAD
Sbjct: 687 QLVEAQTGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPREGWQLLSAD 746

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELRILAH++    L + + N  D+H + A  +  ++ E ++   RR  KTINF +I
Sbjct: 747 YSQIELRILAHLSGEASLQEAYRNGDDVHALTAKIL--LDKESITSNERRLGKTINFGVI 804

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+   R A    + +SEA D++ RY  R+  +  Y+E  +      G+VETI GRR H+
Sbjct: 805 YGMGVQRFARSTGVSQSEAKDFLNRYKERYTNVFSYLELQERLALSKGFVETILGRRRHF 864

Query: 870 D---------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
                           EI+   + ++ +     RAA NAPIQGS+ADI + AM+ + K L
Sbjct: 865 HFDKNGLGRLLGKNPLEIDLKLARRAGMEAQQLRAAANAPIQGSSADIIKVAMVKLDKEL 924

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           ++  L   +LLQ+HDELV EV          +++H+MEKA L    L VPL V   V  N
Sbjct: 925 KNEGLPANLLLQVHDELVLEVDPTATEQVKALVIHTMEKAVL----LNVPLVVEASVGKN 980

Query: 972 WQE 974
           W +
Sbjct: 981 WMD 983


>gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227]
          Length = 605

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/617 (40%), Positives = 379/617 (61%), Gaps = 20/617 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++       
Sbjct: 2   ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   ++D     S +           L  LK   E+E  LK+G N+KYD+ +L  YGI 
Sbjct: 61  PVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I+  + 
Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L  
Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + L
Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +
Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DI
Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF 
Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ER AINAP+QG+AA
Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERTAINAPMQGTAA 530

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C     
Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V +    NW +
Sbjct: 587 LDVPLLVEVGSGENWDQ 603


>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
 gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
          Length = 930

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + +           SF
Sbjct: 327 LSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 375

Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            VE   +   V  + D     + + +E +L+ LK   E+E  LK+G N+KYD+ +L  Y 
Sbjct: 376 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLTLLKPLLEDEKVLKVGQNLKYDRGILANYD 434

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I +RG   D ML SY+LDS    HD+ S++ +WL +   T +EI    K+ +  ++I+  
Sbjct: 435 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 494

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID  +L
Sbjct: 495 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVL 554

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T+ +
Sbjct: 555 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 614

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S
Sbjct: 615 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 673

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    
Sbjct: 674 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK 733

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+  Y
Sbjct: 734 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 793

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+
Sbjct: 794 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 853

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI+V + L   K   +M++Q+HDELVFEV ++E+   S+ I   ME +    
Sbjct: 854 AADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST--- 910

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL V +    NW +
Sbjct: 911 -TLAVPLLVEVGSGENWDQ 928



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 161/291 (55%), Gaps = 11/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I +      K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELQVQPPAADDLLALFRQYEFKRWTTDV 291


>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 912

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/611 (37%), Positives = 370/611 (60%), Gaps = 19/611 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  + +      W+++LE+    +F + T +++   ++ + +A++            E  
Sbjct: 313 YHTVDDADAFDDWLRRLESAELFAFDLETSSLNYMDAEIVGVALAV--------GAGEAA 364

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ L+ H   D+  +    + +L+ LK   E+    K+G N+KYD  VL RY I + G  
Sbjct: 365 YVPLA-HEGPDTPTQLDRDR-VLAALKPLLEDPDRAKVGQNLKYDMSVLARYDIHLEGVA 422

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D ML SYVLDS  S HD+ S+A K+L       +++       IP  +++      +A 
Sbjct: 423 YDTMLESYVLDSTASRHDMDSLALKYLGRATVKYEDVCGKGAKQIPFAQVAVETATRYAG 482

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ L+L   L P+L  E +L+ V+  ++ P++ V+S+ME  G+++D+ LL+Q S E+
Sbjct: 483 EDADITLRLHQTLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQSTEL 542

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           ++ + +LE+  ++ +   FNLSSPKQ+ +ILF ++  P   KT  G   T    LE++  
Sbjct: 543 AEGMAALEQRAHEEAEGPFNLSSPKQIQEILFERMGLPVLQKTPKGAPSTAESVLEELAA 602

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
               + + IL +R L+K+K+TY D LP  I+ +T RVHT Y  A   TGRL+S +PNLQN
Sbjct: 603 RGYELPRLILAYRSLAKLKTTYTDKLPRLIHPKTGRVHTSYHQAVAATGRLSSSDPNLQN 662

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR+AF++ P  KL++ADYSQ+ELRI+AH++    L Q F    DIH   A
Sbjct: 663 IPVRTAEGRRIRKAFVAEPGCKLLAADYSQVELRIMAHLSGDEGLRQAFAEGADIHSATA 722

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FG+  E+V  + RR AK INF +IYG+S + LA QL I R EA  Y+ RYF R+PG+
Sbjct: 723 AEVFGLAPERVGGEQRRAAKAINFGLIYGMSAYGLARQLGIERGEAQAYVDRYFERYPGV 782

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            EY+++T+   R+ GYVET+FGRR++  EIN+     R   ER AINAP+QG+AAD+ +R
Sbjct: 783 KEYMDRTRAEARERGYVETLFGRRLYLPEINARNRQRREYAERTAINAPMQGTAADLIKR 842

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM++V   L +     +M++Q+HDELV EVP  ++   ++ +   M+ A      L VPL
Sbjct: 843 AMVAVDAWLTEAHSKARMVMQVHDELVLEVPAADVPAVAEGLRERMQAAG----ELAVPL 898

Query: 963 KVNIKVSNNWQ 973
           +V++ V+++W+
Sbjct: 899 EVDVGVADDWE 909



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 110/282 (39%), Positives = 168/282 (59%), Gaps = 6/282 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+ K DG P  A+ G  NM+ KLL + R E IA    V+FD
Sbjct: 8   LILVDGSSYLYRAFHAMPPLTNK-DGEPTGAMYGVLNMVRKLLDDYRPERIA----VVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+E++  YKA+RP +P+ L  Q+  ++   +A G+P +E+ G EADD+I T   
Sbjct: 63  APGRTFRDELFDQYKAHRPPMPDELRAQIQPLKDIIRAMGLPLLEVPGVEADDVIGTLAR 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G  V I + DKD+ QLV     L +T+ + ++D   V +K+G+PPE+++   AL 
Sbjct: 123 QAAEAGQPVVISTGDKDMAQLVDEQVTLLNTMNDTRLDEAGVKEKFGVPPERIIDYLALV 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPG+P +G KTAA  L ++G+L+ +   A  +K K   E++  + +   LS  L
Sbjct: 183 GDSSDNIPGVPRVGPKTAAKWLNQFGSLDALKARADEVKGKV-GESLRAHLDELALSEDL 241

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             +R D+ +    E L   + +  RL  + +  EF +L+  +
Sbjct: 242 ATIRCDLDLDQRPEDLKPGESDVERLREYYQRYEFRRLLREL 283


>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 930

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + +           SF
Sbjct: 327 LSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 375

Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            VE   +   V  + D     + + +E +L+ LK   E+E  LK+G N+KYD+ +L  Y 
Sbjct: 376 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLALLKPLLEDEKVLKVGQNLKYDRGILANYD 434

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I +RG   D ML SY+LDS    HD+ S++ +WL +   T +EI    K+ +  ++I+  
Sbjct: 435 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 494

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID  +L
Sbjct: 495 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVL 554

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T+ +
Sbjct: 555 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 614

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S
Sbjct: 615 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 673

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    
Sbjct: 674 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK 733

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+  Y
Sbjct: 734 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 793

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+
Sbjct: 794 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 853

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI+V + L   K   +M++Q+HDELVFEV ++E+   S+ I   ME +    
Sbjct: 854 AADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELNAVSKKIHELMENST--- 910

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL V +    NW +
Sbjct: 911 -TLAVPLLVEVGSGENWDQ 928



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 161/291 (55%), Gaps = 11/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I +      K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDV 291


>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 927

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + +           SF
Sbjct: 324 LSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 372

Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            VE   +   V  + D     + + +E +L+ LK   E+E  LK+G N+KYD+ +L  Y 
Sbjct: 373 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLALLKPLLEDEKVLKVGQNLKYDRGILANYD 431

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I +RG   D ML SY+LDS    HD+ S++ +WL +   T +EI    K+ +  ++I+  
Sbjct: 432 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 491

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID  +L
Sbjct: 492 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVL 551

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T+ +
Sbjct: 552 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 611

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S
Sbjct: 612 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 670

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    
Sbjct: 671 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK 730

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+  Y
Sbjct: 731 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 790

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+
Sbjct: 791 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 850

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI+V + L   K   +M++Q+HDELVFEV ++E+   S+ I   ME +    
Sbjct: 851 AADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST--- 907

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL V +    NW +
Sbjct: 908 -TLAVPLLVEVGSGENWDQ 925



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 161/291 (55%), Gaps = 11/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I +      K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDV 291


>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
 gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
          Length = 915

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/612 (40%), Positives = 364/612 (59%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   +    W++K++     SF   T ++D   ++ + I+I+ ++        V   
Sbjct: 318 YDTVQTWEQFDAWLEKIDHAEITSFDTETTSLDPMVAQIVGISIA-VEAGKAAYIPVAHH 376

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
             D  V   +D         E+L+ LK + E+    K+G ++KYD+ VL  YGI+M G E
Sbjct: 377 GPDAPVQLPRD---------EVLAKLKPWLESRDKKKVGQHLKYDEQVLANYGITMDGIE 427

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R  HD+ ++A + L       +++     S I  D+++  +  E+A 
Sbjct: 428 HDTLLQSYVLESHRP-HDMDNLALRHLGLKTIKYEDVAGKGASQIGFDEVALDKASEYAA 486

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ L+L   L P++  E  L HVY  ++ P   V+ +ME  G+ ID + L+  S EI
Sbjct: 487 EDADITLRLHQTLYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVEKLRVQSNEI 546

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   YDL+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 547 ATRLVELERQAYDLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKL-A 605

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K ILE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 606 EDYPLPKTILEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAVTGRLASNDPNLQN 665

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F+   DIHR  A
Sbjct: 666 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDEALLRAFKQGEDIHRATA 725

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+F V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 726 SEVFSVTPLEVSNDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGV 785

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 786 AAYMENTRTSAKMKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 845

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V K +E+  + T+M++Q+HDELV EVP++E++   + +   M         L+VPL
Sbjct: 846 SMIAVQKWIEESGIRTRMIMQVHDELVLEVPDDELSDVRKRLPELMCGVA----QLKVPL 901

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 902 VAEVGAGANWEE 913



 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 106/256 (41%), Positives = 154/256 (60%), Gaps = 9/256 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGIINMLRRM----RKEVTAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP YKANRP +P+ L  Q+  + +A ++ G P + I G EADD+I T   
Sbjct: 67  AKGKTFRDDWYPQYKANRPSMPDDLARQIEPIHVAVRSLGWPLLMIDGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE  G  V + + DKDL QLV+    L +T+  EK+D E V+ K+G+PPE++V   +L 
Sbjct: 127 RAEARGMNVIVSTGDKDLAQLVTDHVTLINTMTNEKLDREGVVAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L ++G L+ I+ +A  IK     +N+        ++RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAIKWLTQFGTLDGIVAHADEIKGAV-GDNLRRALHFLPMARKL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V + TD  +T   EH+
Sbjct: 246 VTVETDCDLT---EHV 258


>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044]
 gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 930

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + +           SF
Sbjct: 327 LSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 375

Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            VE   +   V  + D     + + +E +L+ LK   E+E  LK+G N+KYD+ +L  Y 
Sbjct: 376 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLTLLKPLLEDEKVLKVGQNLKYDRGILANYD 434

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I +RG   D ML SY+LDS    HD+ S++ +WL +   T +EI    K+ +  ++I+  
Sbjct: 435 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 494

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID  +L
Sbjct: 495 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVL 554

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T+ +
Sbjct: 555 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 614

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S
Sbjct: 615 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 673

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    
Sbjct: 674 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK 733

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+  Y
Sbjct: 734 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 793

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+
Sbjct: 794 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 853

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI+V + L   K   +M++Q+HDELVFEV ++E+   S+ I   ME +    
Sbjct: 854 AADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST--- 910

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL V +    NW +
Sbjct: 911 -TLAVPLLVEVGSGENWDQ 928



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 161/291 (55%), Gaps = 11/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I +      K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDV 291


>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
 gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
          Length = 904

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/613 (37%), Positives = 369/613 (60%), Gaps = 19/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +++   +  W+++L    + S  + T++++   ++ + ++++   +    ++    
Sbjct: 304 AYEVVLDDHGLAAWMERLRNADAFSIDLETNSLNYMDAEIVGVSLAV--EPGQAAY---- 357

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
               L V               +L  L+   E E   K+G N+KYD  VL RYGI +RG 
Sbjct: 358 ----LPVAHCGPGAPDQLDRDRVLDALRPLLEAEQPEKMGQNLKYDMSVLARYGIELRGV 413

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
             D ML SYVLDS  + HD+ S+A K+L     + +++       +P  +I   +   +A
Sbjct: 414 AYDSMLESYVLDSTATRHDMDSLASKYLGVEVTSYEQLCGKGVRQVPFAEIDVERAGHYA 473

Query: 543 IENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ L+L  LL P+L  E  LL V+ +L+ P++ V+S+ME  G+++D DLL++ S E
Sbjct: 474 AEDADIALRLHQLLYPRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLERQSEE 533

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++  +  +E+  ++ +GE FNL SPKQ+ +I F ++  P   +T  GQ  T    LE+++
Sbjct: 534 LAGRMAEVEQRAHEEAGEAFNLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESVLEELS 593

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              + + + ILE R LSK+KSTY D LP  I++ T RVHT Y  A   TGRL+S +PNLQ
Sbjct: 594 ARGHELPRLILEHRGLSKLKSTYTDKLPQLIHRDTGRVHTSYHQAVAATGRLSSSDPNLQ 653

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR+AF++ P  +LI+ADYSQ+ELRI+AH++    L + FE   DIHR  
Sbjct: 654 NIPVRTPEGRRIRKAFVASPGHRLITADYSQVELRIMAHLSGDEGLRRAFEQGEDIHRAT 713

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+F  +  +V+ + RR AK INF +IYG+S + L  QL IPR EA  YI RYF R+PG
Sbjct: 714 AAEVFAAD--EVNDEQRRAAKAINFGLIYGMSAWGLGRQLGIPRDEAQTYIDRYFERYPG 771

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  ++++ +   R+ GYVET+FGRR+H  EI+S     R   ER AINAP+QG+AAD+ +
Sbjct: 772 VRAFMDRAREQAREQGYVETVFGRRLHVPEIHSRNRQRREYAERTAINAPMQGTAADVIK 831

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           RAMI V   L +    +++++Q+HDELV EVPE + T     +   ME +    ++  VP
Sbjct: 832 RAMIDVDALLNERFPESRLVMQVHDELVLEVPEAQATAVGDEVRRLMEGSDRGMVS--VP 889

Query: 962 LKVNIKVSNNWQE 974
           L+V + V ++W++
Sbjct: 890 LEVELGVGDDWEQ 902



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 156/262 (59%), Gaps = 9/262 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q ++ L LVDGSS++YRAF+A P L+   +G P  A+ G  NML KLL     E   + F
Sbjct: 3   QPDDRLVLVDGSSYLYRAFHALPALTNA-NGEPTGALYGVVNMLHKLL----AEEPEARF 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD P  TFR+E++  YKA+RP +P+ L  Q   ++    A G+P +E+ G EADD+I
Sbjct: 58  AVVFDAPGKTFRDELFEQYKAHRPPMPDELRAQREPLKAIIAALGVPVLEVPGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T   +A +    V I +TDKD+ QLV     L +T+   ++D E V +K+G+PPE +  
Sbjct: 118 GT---LAARASGPVLISTTDKDMAQLVDEQVTLLNTMSGTRLDPEGVREKFGVPPELIRD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ DNIPG+P +G KTAA  L  YG+L+ +   A  I+ K   E++  + +   
Sbjct: 175 YLALVGDTSDNIPGVPKVGPKTAAKWLNAYGSLDALREQADEIRGKV-GESLRAHLDELP 233

Query: 242 LSRKLVMLRTDVPITIPLEHLI 263
           LS  LV +R D+ + +  E L+
Sbjct: 234 LSVDLVTIRCDLALEVAPEDLV 255


>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
 gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Cupriavidus metallidurans CH34]
          Length = 934

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/616 (39%), Positives = 369/616 (59%), Gaps = 24/616 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +     + +W++K+      +    T ++D   ++ + I++S               
Sbjct: 332 YETVTTEAALDEWLRKIADAPIVAIDTETTSLDPMLAQLVGISLSVEPGA--------AA 383

Query: 428 FIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           +I ++ H   D  G      L++E +L  ++ + E+    K+G ++KYD  V   +G+++
Sbjct: 384 YIPVA-HRGPDVAGLENHGQLSREYVLERMRGWLEDPARPKLGQHLKYDSHVFANHGVAL 442

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539
           RG   D ML SYVL S R+ H + S+A++ LS    T +E+     + I  D+I   +  
Sbjct: 443 RGIAHDTMLESYVLASYRN-HGMDSLAERLLSLKTITYEEVCGKGANQIGFDQIDLPRAT 501

Query: 540 EHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           E+A E+++V L+L   ++P+L   E L +VYE+++ P+  V+ ++E  G+ ID D L   
Sbjct: 502 EYAAEDADVTLRLHRKMQPQLEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQ 561

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SAE+   ++ LE   +D +G+ FNL SPKQ+G+ILF ++K P   KT +G   T  + L+
Sbjct: 562 SAELGLRMMDLERAAHDAAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQ 621

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D P+ K +L++R LSK+KSTY D LP  +N  T RVHT Y  A+ +TGRLAS +P
Sbjct: 622 KL-ADDYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVTGRLASTDP 680

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T+ G++IR AFI+ P   ++SADYSQIELRI+AHI+    L + F N  DIH
Sbjct: 681 NLQNIPVRTEEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENLLRAFANGEDIH 740

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  A EIFGV  E VS + RR+AK INF +IYG+S F LA+ L I R  A  YI RYF R
Sbjct: 741 RATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKHYIDRYFMR 800

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+E+T+   R+ GYVET+FGRR+   +IN      R   ERAAINAP+QG+AAD
Sbjct: 801 YPGVAHYMEQTRQTAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAAD 860

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + +MI+V   LE  +L T+ ++Q+HDELV EVP+ E+    +++   + +       L
Sbjct: 861 LIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAEL----ELVRVKLPELMCAVATL 916

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL   +    NW+E
Sbjct: 917 NVPLVAEVGSGANWEE 932



 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 113/282 (40%), Positives = 168/282 (59%), Gaps = 17/282 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  +GLP  AI G  NML KL    R +  A + A +FD
Sbjct: 8   LLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAQYIACVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YP YK +RP +PE L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 63  AKGKTFRDDMYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIGTLAL 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G    + + DKDL QLV+ T  L +T+  E +D   V+ K+G+PPE++V   +L 
Sbjct: 123 QASQQGVNTVVSTGDKDLAQLVNDTVTLVNTMSGEVLDPPGVVAKFGVPPERIVDYLSLI 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAETARLSR 244
           GD++DN+PG+P +G KTA   L EYG L++I+ NA +IK    +   N LE+   A   R
Sbjct: 183 GDAVDNVPGVPKVGPKTAVKWLTEYGTLDDIMGNAEKIKGVVGENLRNTLEWLPRA---R 239

Query: 245 KLVMLRTDVPITIPLE-----HLILEDCNGPRLISFLKALEF 281
           +LV ++TD  ++  +      H + ED    +LI+F +   F
Sbjct: 240 ELVTVKTDCDLSGAVADFQALHDLGEDKE--KLIAFFQRYGF 279


>gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
 gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 908

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 308/978 (31%), Positives = 493/978 (50%), Gaps = 108/978 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL++ +     +H A  F
Sbjct: 22  LMLLDGNSLAFRAFYALPAENFKTQSGLTTNAVYGFTAMLINLLRDEQP----THIAAAF 77

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YK  R   P+    Q+ + +    A GI  +   GFEADDIIAT  
Sbjct: 78  DVSRQTFRKDKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEPGFEADDIIATLA 137

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE+EG+ V +++ D+D +QLVS   T LY    V E  +   + V++K+G+ P++   
Sbjct: 138 TQAEQEGYRVLVVTGDRDSLQLVSDQVTVLYPRKGVSELTRFTPDAVVEKYGLTPQQYPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238
             AL GD  DN+PGIPG+G KTA   + EYG+L+ ++ N   +K K     R N+     
Sbjct: 198 FAALRGDPSDNLPGIPGVGEKTATKWIVEYGSLQALVDNVDAVKGKVGDALRANL----S 253

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +  L+R+L  L  DVP+    + L ++  N  ++      LEF  L +R+  T       
Sbjct: 254 SVILNRELTDLIRDVPLPQTPDTLRMQPWNRDQIHRLFDDLEFRVLRDRLFETL------ 307

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                          +A+E E++    ++                               
Sbjct: 308 ---------------VAVEPEVEHGFDVRG------------------------------ 322

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                      + +   ++  W+ +  ++GS     +  T  A+ +   A+AI   D   
Sbjct: 323 -----------RALEPGELAAWLSE-HSLGSRFGVAVVGTHKAYDADATALAIVAADG-- 368

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 +  +ID S           TLT E  + L  +  +    K  H  K     L  
Sbjct: 369 ------DGRYIDTS-----------TLTPEDEAALASWLADPGPPKALHEAKLAMHDLAG 411

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS-D 535
            G ++RG   D  L +Y++  G+ S  +  +A ++L    R E  + ++ S+  D    D
Sbjct: 412 RGWTLRGVTSDTALAAYLVRPGQRSFTLDDLAVRYLHRELRAETPEQQQLSLLDDSDGVD 471

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            Q  +  I  +  +L L   L  +L     L +  R++ P+   +++ME  GI +D  +L
Sbjct: 472 EQAVQTVILRACAVLDLADALDQELARIDSLSLLSRMELPVQRTLAEMEHAGIAVDLGML 531

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +Q+ +E +  +    E  Y + G++ NL SPKQL  +LF +L+ P   KTKTG       
Sbjct: 532 EQLQSEFADQIRDAAEAAYSVIGKQINLGSPKQLQAVLFDELEMPKTKKTKTGYTTDADA 591

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                    +P ++++L  R  +++K T  D L N +     R+HT ++     TGRL+S
Sbjct: 592 LQSLFEKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIHTTFNQTIAATGRLSS 649

Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+AH+++   L + F   
Sbjct: 650 TEPNLQNIPIRTEAGRRIRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTG 709

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VA+  F V I++V+P++RR  K +++ + YG+S + LA QL+I   EA   +++
Sbjct: 710 EDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKISTEEAKVQMEQ 769

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+    +  R++GY  T+ GRR +  E++S    +R   ERAA+NAPIQG
Sbjct: 770 YFDRFGGVRDYLRDVVDQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQG 829

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI+V ++++D  L +++LLQ+HDEL+FEV E E     Q++   M  A   
Sbjct: 830 SAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLVREHMGNAY-- 887

Query: 955 KINLRVPLKVNIKVSNNW 972
              L VPL+V++    +W
Sbjct: 888 --PLDVPLEVSVGYGRSW 903


>gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 622

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/616 (40%), Positives = 368/616 (59%), Gaps = 27/616 (4%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425
           +Y  +   +    W+ K+      +F   T ++D   ++ + +           SF VE 
Sbjct: 24  NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGL-----------SFSVEP 72

Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               ++ ++ H   D   +   + E+L+ L  + E+    K+G ++KYD  VL  YGI++
Sbjct: 73  GHAAYVPVA-HRGPDMPAQ-LPSDEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIAL 130

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  
Sbjct: 131 NGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQAS 189

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + 
Sbjct: 190 EYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQ 249

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+
Sbjct: 250 SGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQ 309

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +P
Sbjct: 310 KL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDP 368

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIH
Sbjct: 369 NLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIH 428

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R
Sbjct: 429 RATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLR 488

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD
Sbjct: 489 YPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAAD 548

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L
Sbjct: 549 LIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKL 604

Query: 959 RVPLKVNIKVSNNWQE 974
           +VPL   + V  NW+E
Sbjct: 605 KVPLVAEVGVGENWEE 620


>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
 gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
          Length = 923

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/616 (40%), Positives = 368/616 (59%), Gaps = 27/616 (4%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425
           +Y  +   +    W+ K+      +F   T ++D   ++ + +           SF VE 
Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGL-----------SFSVEP 373

Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               ++ ++ H   D   +   + E+L+ L  + E+    K+G ++KYD  VL  YGI++
Sbjct: 374 GHAAYVPVA-HRGPDMPAQ-LPSDEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIAL 431

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  
Sbjct: 432 NGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQAS 490

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + 
Sbjct: 491 EYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQ 550

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+
Sbjct: 551 SGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQ 610

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +P
Sbjct: 611 KL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDP 669

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIH
Sbjct: 670 NLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIH 729

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R
Sbjct: 730 RATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLR 789

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD
Sbjct: 790 YPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAAD 849

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L
Sbjct: 850 LIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKL 905

Query: 959 RVPLKVNIKVSNNWQE 974
           +VPL   + V  NW+E
Sbjct: 906 KVPLVAEVGVGENWEE 921



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
 gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
          Length = 923

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V  
Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 554 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 673 NIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 909 LVAEVGVGENWEE 921



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLMQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T]
 gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6]
          Length = 605

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/617 (40%), Positives = 380/617 (61%), Gaps = 20/617 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++       
Sbjct: 2   ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   ++D     S +           L  LK   E+E  LK+G N+KYD+ +L  YGI 
Sbjct: 61  PVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I+  + 
Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L  
Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + L
Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +
Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DI
Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF 
Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+AA
Sbjct: 471 RYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C     
Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V +    NW +
Sbjct: 587 LDVPLLVEVGSGENWDQ 603


>gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 625

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V  
Sbjct: 27  NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 85

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 86  RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 136

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 137 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 195

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 196 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGE 255

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 256 IATRLVTLEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 314

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 315 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 374

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 375 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 434

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 435 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 494

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 495 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 554

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 555 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 610

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 611 LVAEVGVGENWEE 623


>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
 gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
          Length = 933

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/614 (39%), Positives = 358/614 (58%), Gaps = 17/614 (2%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   + ++ W+ +    G  +    TD +DA   + + I+++    K          
Sbjct: 332 YETVTTVEALEPWLTEARKAGLFAMDTETDGLDAQQCRLVGISLAIAPGK--------AC 383

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGF 486
           +I L   T+ D   +     EI + L     +   LKI  N K+D  VL R+ +  +   
Sbjct: 384 YIPLDHQTTLDQPVRQPAIAEIAAALNPILADPTVLKIFQNGKFDLAVLRRHQMPVIAPI 443

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
           +D ML+SY  ++G   H +  ++   L ++     ++  + ++ +P  ++   +   +A 
Sbjct: 444 DDTMLISYAQEAGAHGHGMDELSVLHLGHSPISYDQVTGTGRNRLPFPQVPIDKATAYAA 503

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           E+++V L+LW  LRP+L   K L VYE++++P++ V+  ME  GI++D+  L+++SA+ +
Sbjct: 504 EDADVTLRLWHALRPRLRETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRRMSADFA 563

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NC 662
             +  +E  I+ L+G  FNL+SPKQLG++LF ++      ++KTG W T A  L+ I + 
Sbjct: 564 LRMADMETEIHQLAGRPFNLASPKQLGEVLFDEIGLTGSKRSKTGAWGTDAATLQAIADE 623

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
             + +   IL+WRQL+K+KSTYAD+L   +N RT RVHT + +A T TGRL+S EPNLQN
Sbjct: 624 SGHALPARILDWRQLAKLKSTYADALVEDVNPRTGRVHTSFQMAITTTGRLSSNEPNLQN 683

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IPI+T+ G +IRRAFI+ P   LISADYSQIELR+LAH+A I  L   F N  DIH   A
Sbjct: 684 IPIRTEEGSRIRRAFIADPGHVLISADYSQIELRLLAHVADIPQLKDSFANGEDIHARTA 743

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+FGV ++ +    RR AK INF IIYGIS F LA  L I   EA  YI  YF R+PGI
Sbjct: 744 SEVFGVPMQGMDSLTRRRAKAINFGIIYGISAFGLARSLAISPGEARQYIDAYFARYPGI 803

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E+TK   R NG+V T FGRR     I     + R   ER AINAP+QG AADI +R
Sbjct: 804 RDYMERTKEEARINGFVVTPFGRRCWVPGIADRNPARRGYAERQAINAPLQGGAADIIKR 863

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ +   L D+   T+MLLQ+HDEL+FE PE E    ++++  +M+ A      + VPL
Sbjct: 864 AMVRLPAVLADNSFQTRMLLQVHDELLFEAPEAEAEAVARLVTTTMQDAA----RISVPL 919

Query: 963 KVNIKVSNNWQEEN 976
            V   +  NW E +
Sbjct: 920 VVETGIGTNWGEAH 933



 Score =  283 bits (725), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 137/289 (47%), Positives = 192/289 (66%), Gaps = 5/289 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    HL L+DGS FI+RAF+A P ++R  DG PVNA+ GF NML + L    K+ + +H
Sbjct: 11  LPDSTHLILIDGSGFIFRAFHALPPMTRP-DGTPVNAVFGFTNMLARFL----KDHVGTH 65

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD    TFRN +YP YKA+RP+ P  L+PQ  L+R AT AFG+PAIE+  +EADD+
Sbjct: 66  LAVIFDAGRTTFRNRLYPAYKAHRPEPPPELIPQFALIREATAAFGVPAIELADWEADDL 125

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+Y   A   G  VTI+S+DKDLMQL+ P   + D +K++ I    V++K+G+ PEKM+
Sbjct: 126 IASYARAAVTRGGRVTIVSSDKDLMQLIQPGVEMQDPIKQKTIGPAEVMEKFGVTPEKMI 185

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L     +K  KRR+N++ +AE A
Sbjct: 186 DVQALMGDSVDNVPGVPGIGPKTAAQLINEYGDLDGVLAALETMKPSKRRDNLVAHAEDA 245

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           R+SR+LV L  D P+ +P+  L +   +   L  +L A  F     R+ 
Sbjct: 246 RISRQLVALSQDAPLPVPITDLSVRQPDAAVLQDWLNAQGFRSTAARLG 294


>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
 gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
          Length = 923

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/616 (40%), Positives = 368/616 (59%), Gaps = 27/616 (4%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425
           +Y  +   +    W+ K+      +F   T ++D   ++ + +           SF VE 
Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGL-----------SFSVEP 373

Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               ++ ++ H   D   +   + E+L+ L  + E+    K+G ++KYD  VL  YGI++
Sbjct: 374 GHAAYVPVA-HRGPDMPAQ-LPSDEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIAL 431

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  
Sbjct: 432 NGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQAS 490

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + 
Sbjct: 491 EYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQ 550

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+
Sbjct: 551 SGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQ 610

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +P
Sbjct: 611 KL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDP 669

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIH
Sbjct: 670 NLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIH 729

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R
Sbjct: 730 RATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLR 789

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD
Sbjct: 790 YPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAAD 849

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L
Sbjct: 850 LIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKL 905

Query: 959 RVPLKVNIKVSNNWQE 974
           +VPL   + V  NW+E
Sbjct: 906 KVPLVAEVGVGENWEE 921



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
 gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
 gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
          Length = 923

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V  
Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 554 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 909 LVAEVGVGENWEE 921



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
 gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
          Length = 923

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V  
Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAEIVGLSFS-VEPGHAAYVPVAH 383

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 554 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 909 LVAEVGVGENWEE 921



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 894

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/623 (38%), Positives = 369/623 (59%), Gaps = 29/623 (4%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           S  P+  ++Y  IV+ +++ + +  LE     +    T ++D   ++ +  +++  +   
Sbjct: 286 SADPVRRENYRAIVHREELARLLATLEQTERVAIDTETSSLDPHAAELVGFSLAWFEGD- 344

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
               +   +++ L         GK       L+ L  + E+    K+  N K+D  +   
Sbjct: 345 ----RTRAVYVPLG-----HREGKQIPRDVALALLGPWLEDGSKAKLAQNAKFDWQIFWA 395

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
            G+  RG   D +L SYVLDS  ++HD+ S+A+++L +   +  E+    + +     + 
Sbjct: 396 QGLRPRGLARDTLLESYVLDS-TAAHDLDSLAERYLQHRNISYAELTGKGRQARSFAAVD 454

Query: 535 DSQVQEHAIENSNVIL----QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            +    +A E++ V L    Q+W  +R     E L  V+  ++ P+++V+++ME  G++I
Sbjct: 455 IASATAYAAEDAEVCLRVDAQMWPQIRRH---EGLARVFRDIEMPLVEVLARMEWAGVRI 511

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D+LK++S E+   + ++E   +  +G++FNL+SPKQ+  ILF K+  P   KT  GQ 
Sbjct: 512 DVDVLKRLSEELDTRMATVESEAFAAAGQRFNLNSPKQIQTILFDKMGLPVLKKTPGGQP 571

Query: 651 KTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            T    L ++    D P  + IL++R L+K+K+TYAD+LP  I +RT RVHT Y  A   
Sbjct: 572 STNEDVLAELAKQADLP--RLILDYRGLAKLKNTYADALPQMIQERTGRVHTHYHQAVAA 629

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP+++DLG++IR+AF++ P   LISADYSQIELRI+AH++    L Q
Sbjct: 630 TGRLSSSDPNLQNIPVRSDLGRRIRQAFVAEPGHLLISADYSQIELRIMAHLSGDAGLRQ 689

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F   LDIHR  AAE+F + +E+V+P+ RR AK INF +IYG +P+ LA QL + + EA 
Sbjct: 690 AFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTPYGLAQQLGVGQGEAK 749

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y++RYF R+PG+ EY+E T+   RQ GYVET+FGRR++  EI S   + RN  ERAAIN
Sbjct: 750 AYMERYFERYPGVREYMENTRRLARQQGYVETLFGRRLYLPEIRSQNPARRNYAERAAIN 809

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AAD+ + AMI+V   L       +MLLQ+HDEL+ EVPE+ +  A Q++   ME
Sbjct: 810 APMQGTAADLIKLAMIAVDAWLLAQTDHGRMLLQVHDELILEVPEKAVDAACQMLREKME 869

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
                   L VPL V + V  NW
Sbjct: 870 GVA----ELAVPLTVGLGVGANW 888



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/248 (41%), Positives = 142/248 (57%), Gaps = 7/248 (2%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVD SSF+YRAF+A P L R  DGLP  AI G  NML +L    ++E   S   V+FD 
Sbjct: 7   ILVDASSFLYRAFHALPDL-RAPDGLPTGAILGVANMLRRL----QREYPQSEIIVVFDA 61

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
           P  TFR+ ++  YKA RP +PE +  Q+ L+    +A G+  + + G EADD+I T    
Sbjct: 62  PGKTFRDALFDQYKAQRPPMPEEMRAQVELLHQWVRAMGLRLLVVPGVEADDVIGTLARA 121

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
              +   V I + DKDL QLV   T L DT+K  + D+  V  ++G+ P ++    AL G
Sbjct: 122 TPVQ-TPVIIATGDKDLTQLVDEHTTLMDTMKGTRTDLAEVRARFGVEPTQIADYLALVG 180

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D +DNIPG+PG G KT A  LQ+YG+L+ IL +   I  K   E++   AE    SR+L 
Sbjct: 181 DKVDNIPGVPGAGPKTVAKWLQQYGDLDGILAHGQEIPGKV-GESLRAVAEILPRSRELA 239

Query: 248 MLRTDVPI 255
            +R DV I
Sbjct: 240 RIRCDVEI 247


>gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
 gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
          Length = 976

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 330/1026 (32%), Positives = 531/1026 (51%), Gaps = 122/1026 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59
           L LVDG S  +R+FYA    S+  DG        P +   GF   L  LL N +K S A 
Sbjct: 13  LLLVDGHSLAFRSFYA---FSKGVDGGLTTKEGFPTSVTYGF---LKSLLDNCKKVS-AE 65

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118
              + FD    TFR+E+ P+YKANR   P++    +  + +   ++  +P  +  GFEAD
Sbjct: 66  GVCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILKESLNLPIFKSPGFEAD 125

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168
           D++ T    A  +G+ V I+S D+DL QLV     +Y           +     ++   V
Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINA 221
            +K G+ P+++V L+ALTGDS DNIPGI G+G KTA  LL+E       Y  L+ I  N 
Sbjct: 186 KEKLGVYPDRVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYKTLDIIQKNE 245

Query: 222 SRIKQKKRRENILEYAET----ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
            +  Q   +  ++E  +     A LSR L  +  +VP+ +      L + N   L   LK
Sbjct: 246 DKKYQGFIKGAVMEKLKNDKFNAYLSRNLAKIDVEVPLVLN-NGYELNEINQDSLSESLK 304

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
            LE + L+ +V                  N+  +KG                 F+  +++
Sbjct: 305 KLELSTLLRQVDI---------------FNSAFSKG----------------GFNKNNEE 333

Query: 338 TSK-INSEQTPQKLFLERLQKLSQYPINNDSYTKIVN-TKDIQQWVQKLE-TIGSASFKI 394
             K   S+ +P     E   KL +  +N      IVN ++ + Q V++LE T    +   
Sbjct: 334 KHKDKESKDSPSTDLEEIENKLPKIKVN------IVNDSESLDQLVKRLEITKEIVALDT 387

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T++++   ++ + I     ++ +D        +I L  H SQ         +++   L+
Sbjct: 388 ETNSLNPLDAELVGIGFCLGEESNDL------FYIPLG-HQSQKDEMNQLAIEDVFLNLR 440

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513
            + E+    K   N K+D+ + + +G+++ G   D +L  Y+L++ +  H ++ I  +  
Sbjct: 441 TWIESPEKEKTLQNCKFDRQIFYNHGLNLSGVTFDTLLADYILNN-QEKHGLSEICFREF 499

Query: 514 SY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHV 568
            +   + KE +   K    +D I+ + +  +   +  +  ++  + + +   EK  L  +
Sbjct: 500 GFKPPSFKETVGKNKDFSFVD-INHASI--YCGYDVFLTYKIAKIFKERFRKEKKELTKL 556

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           ++ ++ P+  V+S ME++GI ID   L ++S E+   L ++EEN+++++ ++FNLSSPKQ
Sbjct: 557 FKEIELPLEQVLSGMEMSGISIDITYLNELSRELKSTLANIEENVFEIAKQEFNLSSPKQ 616

Query: 629 LGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           LG+ILF KL        KTKTG W T A  LE++   ++ II  +++ R LSK+ STY D
Sbjct: 617 LGEILFDKLNLDKKKSRKTKTG-WSTDAVVLERL-VEEHEIIPYLIKHRTLSKLLSTYID 674

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
           +LPN INK+T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+
Sbjct: 675 ALPNLINKKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLL 734

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           SADYSQIELRILAH+A    L   F  + DIH + A  IF    + ++   RR  KTINF
Sbjct: 735 SADYSQIELRILAHLANEEILITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINF 792

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            +IYG+   + A    +  +EA +++ +Y  R+  I +++E  +      GYVETIFGR+
Sbjct: 793 GVIYGMGIKKFARSTGVSTTEAKEFLIKYKKRYAKIFKFLELQERLALSKGYVETIFGRK 852

Query: 867 IHY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
             +                  D   + K+ +   + RAA NAPIQGS+ADI + AM+ ++
Sbjct: 853 REFKFDKNGLGRLIGKEPYEIDLQTARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLN 912

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           K L +  +  KMLLQ+HDEL+FEV  + +    Q++  +ME      + L+VPL V+I V
Sbjct: 913 KKLLEMNIPVKMLLQVHDELLFEVKPDFLEITKQLVKETMEDC----VKLKVPLLVDIGV 968

Query: 969 SNNWQE 974
            NNW E
Sbjct: 969 GNNWME 974


>gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 622

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V  
Sbjct: 24  NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAEIVGLSFS-VEPGHAAYVPVAH 82

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 83  RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 133

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 134 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 192

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 193 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 252

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 253 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 311

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 312 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 371

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 372 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 431

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 432 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 491

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 492 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 551

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 552 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 607

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 608 LVAEVGVGENWEE 620


>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
 gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
 gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
          Length = 926

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V  
Sbjct: 328 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAEIVGLSFS-VEPGHAAYVPVAH 386

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 387 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 437

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 438 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 496

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 497 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 556

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 557 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 615

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 616 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 675

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 676 NIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 735

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 736 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 795

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 796 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 855

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 856 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 911

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 912 LVAEVGVGENWEE 924



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGGV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/517 (45%), Positives = 341/517 (65%), Gaps = 11/517 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
           K+G N+KYDK VL   G  + G + D ML SYVL+S  + HD+ S+A K+L +   + ++
Sbjct: 398 KVGQNLKYDKSVLANAGYQLNGIKFDTMLESYVLNSVGTRHDMDSLALKFLGHKNISFED 457

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMID 578
           I    K  +  +++   +   +A E++++ L+L  +L PKL   EKL  V+E ++ P+++
Sbjct: 458 IAGKGKKQLTFNQVELDKAGPYAAEDADITLRLHQVLWPKLAADEKLKSVFEDIEMPLVN 517

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S +E TG+ ID  +L   S  + + LL LE+  Y+++GE FNLSSPKQL  +LF KL+
Sbjct: 518 VISDIERTGVAIDSKMLAAHSQRLGERLLELEKEAYEIAGEPFNLSSPKQLQVLLFEKLE 577

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   +TA+++ Q    D P+ K I+E R LSK+KSTY D LP  +N++TQR
Sbjct: 578 LPIIKKTPKGA-PSTAEEVLQELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLMVNEKTQR 636

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+++ G++IR AFI+    K+++ADYSQIELRI+
Sbjct: 637 VHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIM 696

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+++   L   F N LD+H   AAE+FGV++E+V+  MRR AK +NF +IYG+S F LA
Sbjct: 697 AHLSQDKGLLSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNFGLIYGMSAFGLA 756

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL +PR EA  YI +YF RFPG+ EY+E T+    ++GYVETIFGRR++  EI +   +
Sbjct: 757 RQLDVPRHEAQHYIDKYFERFPGVLEYMETTREKAAESGYVETIFGRRLYLPEIKAQNGA 816

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEI 937
            R   ERAAINAP+QG+AADI ++AM+SVH  + +    T K+L+Q+HDELVFE+  + +
Sbjct: 817 RRKGAERAAINAPMQGTAADIIKKAMLSVHSWVYEQAPNTVKLLMQVHDELVFEIKTDCV 876

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ++ I   M +A      L VPL V     +NW++
Sbjct: 877 DAYTKHICELMSQAA----TLDVPLIVEADEGDNWEQ 909



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 182/334 (54%), Gaps = 12/334 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS+++RA+++ P L+    G    AI G  NML  L+    ++   SH  V
Sbjct: 6   ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVINMLKSLI----RQYDPSHMVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRN++Y +YKANRP +P+ L  Q+  +    +A G P I I+G EADD+I T
Sbjct: 61  IFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPIHRIIKAMGFPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +  IA ++   V + + DKD+ QLV+    L +T+ +   D   V++K+G+ PE ++   
Sbjct: 121 FARIASEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD +DNIPG+ G G KTA   L++YG+L+ ++ NAS IK  K  E +    +   LS
Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDNASEIK-GKIGEKLAAALDHLPLS 239

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            +L  ++ DV +   L+   L++ N   LI+     EF + +  +      D        
Sbjct: 240 YQLATIKCDVEVESDLDTFKLQEPNKDELIALYGECEFRRWLAEL-----LDNPKDTETH 294

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
           L + T  N+ +    E   +T +  SQF +L +Q
Sbjct: 295 LAVPTEANE-VPKVAEAQYETILTESQFDALIEQ 327


>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
 gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
          Length = 930

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + +           SF
Sbjct: 327 LSAEHYVTILDEATLVTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 375

Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            VE   +   V  + D     + + +E +L+ LK   E+E  LK+G N+KYD+ +L  Y 
Sbjct: 376 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLALLKPLLEDEKLLKVGQNLKYDRGILANYD 434

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I +RG   D ML SY+LDS    HD+ S++ +WL +   T +EI    K+ +  ++I+  
Sbjct: 435 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 494

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID  +L
Sbjct: 495 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVL 554

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T+ +
Sbjct: 555 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 614

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S
Sbjct: 615 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 673

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    
Sbjct: 674 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFSEGK 733

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+  Y
Sbjct: 734 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 793

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+
Sbjct: 794 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 853

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI+V + L   +   +M++Q+HDELVFEV ++E+   S+ I   ME +    
Sbjct: 854 AADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST--- 910

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL V +    NW +
Sbjct: 911 -TLAVPLLVEVGSGENWDQ 928



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 160/291 (54%), Gaps = 11/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVSKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAALSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDV 291


>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
 gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
          Length = 923

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V  
Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGE 553

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 554 IATRLVTLEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 909 LVAEVGVGENWEE 921



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
 gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
          Length = 976

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 323/1025 (31%), Positives = 531/1025 (51%), Gaps = 120/1025 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59
           L LVDG S  +R+FYA    S+  DG        P +   GF   L  LL N +  S   
Sbjct: 13  LLLVDGHSLAFRSFYA---FSKGIDGGLTTKEGFPTSVTYGF---LKSLLDNCKNIS-PQ 65

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118
              + FD    TFR+E+ P+YKANR   P++    +  + +   ++  +P  +  G+EAD
Sbjct: 66  GVGITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYEAD 125

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168
           D++ T    A  +G+ V I+S D+DL QLV     +Y           +     ++   V
Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I     +I++  
Sbjct: 186 KEKLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKIQKNN 245

Query: 229 RR-----------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
            +           E +      A LSR L  + T+VP+ +      L++ N   L   LK
Sbjct: 246 DKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSESLK 304

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
            LE + L+ ++                  N+T +KG       D++   K          
Sbjct: 305 KLELSTLLRQIDI---------------FNSTFSKG-----GFDKNNVAK---------- 334

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKIIT 396
                 E+ P+      L+  S+  I   + T + + + + + +Q+L+      S    T
Sbjct: 335 ----EEEKAPKVTGNNELEN-SENKIPKINVTVVNDFELLDKLIQRLDKTNQIVSLDTET 389

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKK 455
           ++++   ++ + I +   ++ DD        +I L   T +++   N L+ E + S L+ 
Sbjct: 390 NSLNPIDAELVGIGLCLGEENDD------LFYIPLGHQTKKETP--NQLSIEYVFSKLRN 441

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514
           + E+    K   N K+D+ +   +G+ ++G   D +L  Y+L++ +  H ++ I+ +   
Sbjct: 442 WIEDPKKEKALQNSKFDRQIFFNHGLILKGVTFDTLLADYLLNN-QEKHGLSEISFRLFG 500

Query: 515 Y---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVY 569
           +   + KE +   K    +D I ++ +  +   +  +  ++  + + +   EK  L+ ++
Sbjct: 501 FKPPSFKETVGKNKDFSFVD-IDEASI--YCGYDVFLTFKIVKIFKERFSKEKDELIKLF 557

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
           E ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+L+ E FNLSSPKQL
Sbjct: 558 EEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEENFNLSSPKQL 617

Query: 630 GDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           G+ILF KL        KTKTG W T A  LE++   ++ II+++++ R LSK+ STY D+
Sbjct: 618 GEILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQHLIKHRTLSKLLSTYIDA 675

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LPN IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+S
Sbjct: 676 LPNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNCKLLS 735

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELRILAH+A    L   F  + DIH + A  IF    E++S   RR  KTINF 
Sbjct: 736 ADYSQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFG 793

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           +IYG+   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+ 
Sbjct: 794 VIYGMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKR 853

Query: 868 HY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
            +                  D  ++ ++ +   + RAA NAPIQGS+ADI + AM+ ++K
Sbjct: 854 EFKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNK 913

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
              +  +  KMLLQ+HDEL+FEV ++ +   ++++  +ME      + L VPL V+I + 
Sbjct: 914 KFIEMNVPAKMLLQVHDELLFEVEQDSLEITTKLVKKTMEDC----VKLNVPLLVDIGIG 969

Query: 970 NNWQE 974
           +NW E
Sbjct: 970 DNWME 974


>gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109]
 gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109]
          Length = 986

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 340/1034 (32%), Positives = 528/1034 (51%), Gaps = 125/1034 (12%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K DG P +   GF   L  LL NS K       
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGF---LKALLDNS-KTLKPEGV 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
           A+ FD    TFR++   +YKA+R   PE+    L  L ++      +P     GFEADD+
Sbjct: 65  AIAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLEQLQQILETHLQLPLCMAPGFEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A   G+ V I+S D+DL QLV  +     LY        +     I  E V+ 
Sbjct: 125 LGTLANRAADSGWGVRILSGDRDLFQLVDDSRDIAVLYMGGGPYAKSSGPTLIHEEGVLG 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILIN--- 220
           K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL++       Y  LE +      
Sbjct: 185 KLGVMPNKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNSDLDAVYATLEQVEAEGPK 244

Query: 221 ASRIKQKKR-RENILEYAETARLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISF 275
           ASR   K   +E +    + A LSRKL  +  DVP+    ++PL  +   D +G  L S 
Sbjct: 245 ASRGAIKGALKEKLRADRDNAYLSRKLAEILVDVPLPKEPSLPLSSV---DADG--LSSC 299

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           L+ LE   L+ +V +               +      G     E       KT + S+ S
Sbjct: 300 LEDLELNSLLRQVGSF--------------VAAFSEGGYGANAEA---AAAKTPRRSASS 342

Query: 336 DQ--TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASF 392
           +Q      ++  T + + L  L+             +++ T+ D+   VQ+L     +  
Sbjct: 343 EQPAAEAASAAATQEDVGLPALKP------------QLIQTETDLDALVQRLMACTDSGL 390

Query: 393 KIITDT----MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
            +  DT    ++ F ++ + I I   +  D  ++      I L    ++DS+ +    + 
Sbjct: 391 PVAFDTETTDLNPFRAELVGIGICWGETLDALAY------IPLGHKGNEDSSPEQLPLET 444

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507
           +L+ L  +  + +  K   N KYD+L+L R+G+++ G   D +L  Y+ D+  + H +  
Sbjct: 445 VLTALAPWLASSNHPKTLQNAKYDRLILLRHGVALEGVVIDTLLADYLRDAA-AKHGLEL 503

Query: 508 IAQKWLSY--TRKEILKSRK---SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-- 560
           +A++   +  T    L  +K   + +P++  S      +   + +V  +L LLLR +L  
Sbjct: 504 MAEREFGFQPTAFTDLVGKKQTFADVPLEPAS-----LYCGMDVHVTRRLALLLRHQLEA 558

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
           +  +L+ + E++++P+  V+++ME TGI+ID   L+ +S E+   L  LE +    +G  
Sbjct: 559 MGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTLQQLESDAKAAAGVD 618

Query: 621 FNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           FNL+SPKQLG++LF  L        +TKTG + T A  LE++   D+P++  +LE R LS
Sbjct: 619 FNLASPKQLGELLFDTLGLDRKKSRRTKTG-FSTDATVLEKLG-NDHPVVPLVLEHRVLS 676

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+KSTY D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+
Sbjct: 677 KLKSTYIDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFL 736

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
                 L+SADYSQIELRIL H++    L + + +  D+H + A  +   N  +VSP  R
Sbjct: 737 PQEGWTLLSADYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLLLDKN--EVSPDER 794

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R  KTINF +IYG+   R A +  + +SEA +++ RY  R+P +  ++E  +      GY
Sbjct: 795 RLGKTINFGVIYGMGAQRFARETGVSQSEAKEFLARYKQRYPKVFAFLELQERLALSRGY 854

Query: 859 VETIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADIT 900
           VETI GRR   H+D             EI+   + +  +     RAA NAPIQGS+ADI 
Sbjct: 855 VETILGRRRPFHFDRNGLGRLLGKAPLEIDLNVARRGGMEAQQLRAAANAPIQGSSADII 914

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ +  +L+   L  ++LLQ+HDELV EV    +    +++V +ME+A    + L V
Sbjct: 915 KVAMVQLQDALQRQGLPAQLLLQVHDELVLEVAPNALDATRELVVQTMEQA----VALSV 970

Query: 961 PLKVNIKVSNNWQE 974
           PL V   V  NW E
Sbjct: 971 PLVVETGVGANWME 984


>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
 gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
          Length = 930

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + +           SF
Sbjct: 327 LSAEHYVTILDEATLVTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 375

Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            VE   +   V  + D     + + +E +L+ LK   E+E  LK+G N+KYD+ +L  Y 
Sbjct: 376 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLALLKPLLEDEKLLKVGQNLKYDRGILANYD 434

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I +RG   D ML SY+LDS    HD+ S++ +WL +   T +EI    K+ +  ++I+  
Sbjct: 435 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 494

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID  +L
Sbjct: 495 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVL 554

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T+ +
Sbjct: 555 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 614

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S
Sbjct: 615 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 673

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    
Sbjct: 674 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK 733

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+  Y
Sbjct: 734 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 793

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+
Sbjct: 794 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 853

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI+V + L   +   +M++Q+HDELVFEV ++E+   S+ I   ME +    
Sbjct: 854 AADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST--- 910

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL V +    NW +
Sbjct: 911 -TLAVPLLVEVGSGENWDQ 928



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 160/291 (54%), Gaps = 11/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVSKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAALSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDV 291


>gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 618

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%)

Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           N   +Q W Q    L TI +A   +F   T ++D   ++ + ++ S ++        V  
Sbjct: 20  NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 78

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 79  RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 129

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 130 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 188

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 189 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 248

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 249 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 307

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 308 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 367

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 368 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 427

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 428 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 487

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 488 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 547

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 548 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 603

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 604 LVAEVGVGENWEE 616


>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
          Length = 926

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/612 (40%), Positives = 361/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V   
Sbjct: 329 YMTVQTWEQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFS-VEPGHAAYVPVAHR 387

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
             D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G E
Sbjct: 388 GPDMPAQLPRD---------EVLAKLTPWLEDASKKKLGQHLKYDAQVLANYGIALNGIE 438

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D++   Q  E+A 
Sbjct: 439 HDTLLESYVLESHRT-HDMDSLALRHLGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAA 497

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S+EI
Sbjct: 498 EDADITLQLHHALYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDTDRLGRQSSEI 557

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++  
Sbjct: 558 ATRLIELEQQAYGLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL-A 616

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 617 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQN 676

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+PP  K++SADYSQIELRI+AHI++   L + F N  DIHR  A
Sbjct: 677 IPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFANGEDIHRATA 736

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 737 AEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPGV 796

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 797 ARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 856

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   LE   L  +M++Q+HDELV EVPE E++    I+   + +       L+VPL
Sbjct: 857 SMIAVDDWLERGGLRARMIMQVHDELVLEVPEGELS----IVREKLPEMMCGVAKLKVPL 912

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 913 VAEVGAGENWEE 924



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 RAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|162149305|ref|YP_001603766.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
          Length = 943

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/634 (37%), Positives = 348/634 (54%), Gaps = 38/634 (5%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +     ++ WV +  T G  +    TD +D   +  + I+++    +          
Sbjct: 323 YETVRTAGALETWVAEARTAGFCAIDTETDGLDPLRAGLVGISLAVAPGR--------AC 374

Query: 428 FIDLSVHTSQ---------------------DSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           +I L+ HT++                     D  G    T   L+ L     +   LKI 
Sbjct: 375 YIPLA-HTAEPPPPQLLPDLLLEPAPQDDAPDPVGPQLETGLALAILGPLLADASVLKIF 433

Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK 522
            N K+D LVL R G       +D ML+SY   +GR    +  +++ +L +T     E+  
Sbjct: 434 QNAKFDLLVLTRAGAPQPAPVDDTMLISYAQFAGRHGQGMDELSRLYLGHTPIPYDEVTG 493

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           + ++ +P  ++  ++   +A E+++V L+LWL LRP L +   L +YE L++P++ V++ 
Sbjct: 494 TGRNRVPFARVDVARATAYAAEDADVTLRLWLSLRPTLRIHHALALYEELERPLVAVLAD 553

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI ID   L+++SA+ +  +  +E  I  L+G  FN+ SPKQLG+ILF ++  P G
Sbjct: 554 MERAGIAIDVVELRRMSADFATRMAQMEAEIQALAGRSFNVGSPKQLGEILFDEMGLPGG 613

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            + K+G W T +  L+ +    + +   IL WRQL+K+KSTYAD+L    +  T RVHT 
Sbjct: 614 KRMKSGAWGTDSSVLQDLADQGHDLPGRILAWRQLAKLKSTYADALVKQADPDTARVHTS 673

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           + +A T TGRL+S EPNLQNIPI+T+ G +IRRAF++ P   L+SADYSQIELR+LAH+A
Sbjct: 674 FQMAITSTGRLSSNEPNLQNIPIRTEEGGRIRRAFVAAPGHVLLSADYSQIELRLLAHVA 733

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
            I  L + F    DIH   A+E+FG+ IE + P  RR AK INF IIYGIS F L  QL 
Sbjct: 734 DIPALREAFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAINFGIIYGISAFGLGRQLG 793

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP  EA  YI  YF R+PGI  Y+E  K   +  GYV T FGRR     I    +  R  
Sbjct: 794 IPPGEARAYIDAYFARYPGIRAYMETVKQEAKDQGYVTTPFGRRCWVPGIADRSAVRRAY 853

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG AADI +RAM+ +  +L    L  ++LLQ+HDEL+FEV   +    S 
Sbjct: 854 AERQAINAPLQGGAADIIKRAMVRLPHALASAGLDGRLLLQVHDELLFEVRAGQQDALSA 913

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ++   ME A     +L VPL V      NW + +
Sbjct: 914 LVKQVMESAA----SLSVPLVVETGTGANWADAH 943



 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 140/284 (49%), Positives = 195/284 (68%), Gaps = 5/284 (1%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL LVDGS FI+RAF+A P ++   DG PVNA+ GF NML +LL    ++ + +H AVIF
Sbjct: 8   HLILVDGSGFIFRAFHALPPMT-APDGTPVNAVFGFTNMLARLL----RDHVGTHLAVIF 62

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D   VTFRN IY  YKA+RP+ PE L PQ  LVR AT AFG+P IE  G+EADD+IA Y 
Sbjct: 63  DAGRVTFRNGIYDQYKAHRPEPPEELRPQFALVRDATAAFGVPGIEEAGWEADDLIAAYA 122

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            +    G   T++S+DKDLMQL+ P   + D ++++ I  + V  K+G+ P+K++ +QAL
Sbjct: 123 RLVTDAGGRCTVVSSDKDLMQLIRPGVEMLDPIRQKPIGPKEVEAKFGVTPDKVIDVQAL 182

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG+PGIG KTA+ L+ EYG+L+ IL  A  +K  KRR++++E+AE ARLSR 
Sbjct: 183 IGDSVDNVPGVPGIGPKTASALIAEYGSLDAILDGAPAMKPSKRRDSLIEHAERARLSRV 242

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           LV LR D P  + LE LI  D +  +L  +L+++ F  L++R+ 
Sbjct: 243 LVTLREDAPCPLGLEDLICRDPDEVKLGEWLQSMGFRSLLHRMG 286


>gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 619

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%)

Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           N   +Q W Q    L TI +A   +F   T ++D   ++ + ++ S ++        V  
Sbjct: 21  NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 79

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 80  RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 130

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 131 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 189

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 190 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 249

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 250 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 308

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 309 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 368

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 369 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 428

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 429 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 488

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 489 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 548

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 549 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 604

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 605 LVAEVGVGENWEE 617


>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
          Length = 923

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%)

Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           N   +Q W Q    L TI +A   +F   T ++D   ++ + ++ S ++        V  
Sbjct: 325 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 554 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 909 LVAEVGVGENWEE 921



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 620

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%)

Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           N   +Q W Q    L TI +A   +F   T ++D   ++ + ++ S ++        V  
Sbjct: 22  NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAEIVGLSFS-VEPGHAAYVPVAH 80

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 81  RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 131

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 132 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 190

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 191 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 250

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 251 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 309

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 310 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 369

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 370 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 429

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 430 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 489

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 490 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 549

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 550 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 605

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 606 LVAEVGVGENWEE 618


>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
 gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
          Length = 923

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%)

Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           N   +Q W Q    L TI +A   +F   T ++D   ++ + ++ S ++        V  
Sbjct: 325 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAEIVGLSFS-VEPGHAAYVPVAH 383

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 554 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 909 LVAEVGVGENWEE 921



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
 gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
          Length = 876

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%)

Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           N   +Q W Q    L TI +A   +F   T ++D   ++ + ++ S ++        V  
Sbjct: 278 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 336

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 337 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 387

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 388 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 446

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 447 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 506

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 507 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 565

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 566 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 625

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 626 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 685

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 686 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 745

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 746 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 805

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 806 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 861

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 862 LVAEVGVGENWEE 874



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 124/204 (60%), Gaps = 1/204 (0%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGV 180

Query: 228 KRRENILEYAETARLSRKLVMLRT 251
              +N+    +   L+RKLV + T
Sbjct: 181 V-GDNLRRALDFLPLARKLVTVET 203


>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
 gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
          Length = 923

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/613 (40%), Positives = 366/613 (59%), Gaps = 27/613 (4%)

Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           N   +Q W Q    L TI +A   +F   T ++D   ++ + ++ S ++        V  
Sbjct: 325 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE   Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 554 IATRLVALEREAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 673 NIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 909 LVAEVGVGENWEE 921



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
          Length = 926

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/612 (40%), Positives = 361/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V   
Sbjct: 329 YMTVQTWEQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFS-VEPGHAAYVPVAHR 387

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
             D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G E
Sbjct: 388 GPDMPAQLPRD---------EVLAKLTPWLEDASKKKLGQHLKYDAQVLANYGIALNGIE 438

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D++   Q  E+A 
Sbjct: 439 HDTLLESYVLESHRT-HDMDSLALRHLGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAA 497

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S+EI
Sbjct: 498 EDADITLQLHHALYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEI 557

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++  
Sbjct: 558 ATRLIELEQQAYGLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL-A 616

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 617 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQN 676

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  A
Sbjct: 677 IPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATA 736

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 737 AEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPGV 796

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 797 ARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 856

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   LE   L  +M++Q+HDELV EVPE E++    I+   + +       L+VPL
Sbjct: 857 SMIAVDDWLERGGLRARMIMQVHDELVLEVPESELS----IVREKLPEMMCGVAKLKVPL 912

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 913 VAEVGAGENWEE 924



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 RAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259]
 gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259]
          Length = 907

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/613 (38%), Positives = 361/613 (58%), Gaps = 23/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I++   +  WV ++ T  + +  +   +      + I +A +  +         E 
Sbjct: 309 GYEIILSEAQLDAWVARVATADAFALDVEASSASPLQCELIGLAFAVCEG--------EA 360

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            ++ L  H +              + +K   E      +G N+KY + VL   GI++ G 
Sbjct: 361 AYLPLGHHYA--GAPAQLSRAAAFARIKPLLEERAAKIVGQNLKYARHVLANCGIALGGA 418

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
            +D +L SYVL++    H++AS+A + L        E+     + I  D+++  +  E+A
Sbjct: 419 ADDTLLQSYVLEA-HQPHELASLANRHLGLATLACDELTGKGAARIGFDQVAVERAGEYA 477

Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E ++V L++   L  ++   EKL +VY  ++ P+ +V+ +ME  G+ +D+ LL   S E
Sbjct: 478 AEQADVTLRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGE 537

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + + +L LE+  +  +G+ FNL SPKQ+GDILF +   P   KT  G   T  + LE + 
Sbjct: 538 LGRKMLELEQRAFQEAGQPFNLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLA 597

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D+PI + IL++R L+K+KSTY D LP  ++  T R+HT YS A+ +TGRLAS+EPNLQ
Sbjct: 598 L-DHPIARAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATAVTGRLASVEPNLQ 656

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP +T  G++IR AFI+PP   L+SADYSQIELRI+AH++    L   F N LDIH   
Sbjct: 657 NIPARTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLDIHTAT 716

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV ++ VS + RR AK INF +IYG+S F LA+QL + RS A  +I RYF R+PG
Sbjct: 717 AAEVFGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAAQAWIDRYFTRYPG 776

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+ +T+   R  GYVET+FGRR++  EIN+     R   ERAAINAP+QG+AAD+ +
Sbjct: 777 VANYMLRTRESARAQGYVETVFGRRLYLPEINARNPQRRQGAERAAINAPMQGTAADLIK 836

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA-SQIIVHSMEKACLPKINLRV 960
            AMI+V + ++  +L T++LLQ+HDEL+ EVPE E+    +++  H  + A      L+V
Sbjct: 837 LAMIAVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELPSHMCDVAA-----LKV 891

Query: 961 PLKVNIKVSNNWQ 973
           PL+V + V  NW+
Sbjct: 892 PLRVGVGVGGNWE 904



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/278 (38%), Positives = 159/278 (57%), Gaps = 10/278 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q    L LVDGSS++YRAF+A P L R   G P +AI G   ML +L    RK+  A + 
Sbjct: 8   QPGKTLLLVDGSSYLYRAFHALPDL-RNAAGEPTSAIKGVLAMLHRL----RKDYAADYI 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+++YP YKANRP +P+ L  Q+  +  A +A G P + I G EADD+I
Sbjct: 63  ACVFDAKGKTFRDDLYPAYKANRPAMPDDLRSQIEPLHEAIRAEGWPLVVIDGVEADDVI 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A ++G    + + DKD+ QLV     L +T+  E +D   V+ K+G+ P++++ 
Sbjct: 123 GTLVRHAAQKGIRSIVSTGDKDMAQLVDGHVTLVNTMSLETLDEAGVVAKFGVAPDRIID 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L GD++DN+PG+   G KTAA  L EYG L+N+L +A  +K     EN+    +   
Sbjct: 183 YLTLVGDAVDNVPGVAKCGPKTAAKWLAEYGTLDNLLAHADAVKGAVG-ENLRAVVDWLP 241

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
            +R L+ ++TDV +    + L+L+    PR I  L+ L
Sbjct: 242 QARALLTIKTDVALPFDFDDLVLK----PRDIDALRGL 275


>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
          Length = 923

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/613 (39%), Positives = 364/613 (59%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V  
Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  +  +    K+G ++KYD  VL  YGI++ G 
Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLGDAGKKKLGQHLKYDAQVLANYGIALNGI 434

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGE 553

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 554 IATRLVTLEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 909 LVAEVGVGENWEE 921



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQRGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 780

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 291/855 (34%), Positives = 441/855 (51%), Gaps = 110/855 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA  LL          Y NL+ +     R   K     + E+ E
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIR-GAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L    C  P                            
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQL---HCGEP---------------------------- 268

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355
                                 DRDT ++     +F S  +   + ++++  Q+L +E  
Sbjct: 269 ----------------------DRDTLMELYAELEFKSWIEDLQR-DAKRAGQELTVEE- 304

Query: 356 QKLSQYPINND---SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                 P   D   +Y  I+       W++KL+     +F   ++  DA  ++ + +   
Sbjct: 305 ------PTVEDREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGL--- 355

Query: 413 TLDQKDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
                   SF ++T    +I L+   S     +      +L  LK   E+    K+G + 
Sbjct: 356 --------SFAIQTHEAAYIPLT--HSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHA 405

Query: 470 KYDKLVL--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
           K+   +L           GI ++G   D +L SYVLDS  + HD  S+  K+L++T    
Sbjct: 406 KFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPM 576
           +EI       +  D+I+  Q   +A E +++ L+L  +   +L  +  L  V   ++ P+
Sbjct: 466 QEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPL 525

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V++++E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ K
Sbjct: 526 VPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEK 585

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L  P  +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT
Sbjct: 586 LGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRT 645

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+HT Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELR
Sbjct: 646 GRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELR 705

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH+A+   L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F 
Sbjct: 706 IMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFG 765

Query: 817 LATQLRIPRSEAADY 831
           LA Q+ + R ++  Y
Sbjct: 766 LAKQIGVDRKQSQAY 780


>gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002]
 gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002]
          Length = 913

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/612 (40%), Positives = 368/612 (60%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   + +  W+ K+      SF   T ++D   ++ + +++S    +          
Sbjct: 316 YETVQTWEQLDAWLDKINAAELTSFDSETTSLDPMVAQIVGLSLSVEAGR--------AA 367

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ L+ H   D+        E+L+ LK + E+    K+G ++KYD+ VL  YGI MRG E
Sbjct: 368 YVPLA-HRGPDAP-VQLPRDEVLAKLKPWLESADHKKVGQHLKYDEQVLANYGIEMRGVE 425

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++  +  E+A 
Sbjct: 426 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVALDKAAEYAA 484

Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ L+L   L P++ VE  L HVY  ++ P   V+ +ME TG+ ID + L+Q S EI
Sbjct: 485 EDADITLRLHQALYPQIAVENSLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSGEI 544

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE + Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 545 ATRLIELEGSAYELAGGEFNLGSPKQIGQIFFEKLELPVIKKTPSGAPSTDEEVLQKL-A 603

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N RT RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 604 EDYPLPKILLEHRGLSKLKSTYTDKLPRMVNPRTGRVHTNYAQAVAVTGRLASNDPNLQN 663

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 664 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDIHRATA 723

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +EIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 724 SEIFNVTPLEVSSDQRRVAKVINFGLIYGMSAFGLASNLGITRDAAKMYIDRYFARYPGV 783

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 784 ARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKM 843

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   +ED K+ T+M++Q+HDEL+ EVP+ E++   + +   M         L+VPL
Sbjct: 844 SMIAVQNWIEDSKIGTRMIMQVHDELILEVPDAELSEVRKRLPELMCGVA----ALKVPL 899

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 900 VAEVGAGLNWEE 911



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/250 (40%), Positives = 151/250 (60%), Gaps = 6/250 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  +G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPEGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP+YKANRP +PE L  Q+  + +A +A G P + I   EADD+I T   
Sbjct: 67  AKGKTFRDDWYPEYKANRPSMPEDLARQIEPIHVAVRALGWPLLMIDRVEADDVIGTLCT 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK G  V + + DKDL QLVS    L +T+  E +D + V+ K+G+PPE+++   +L 
Sbjct: 127 EAEKLGMNVVVSTGDKDLAQLVSNRVTLVNTMTNETLDRDGVVAKFGVPPERIIDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ I+ +AS IK     +N+    +   ++RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLMQYESLDGIVEHASEIKGAV-GDNLRRALDFLPMARKL 245

Query: 247 VMLRTDVPIT 256
           V +     +T
Sbjct: 246 VTVERHCDLT 255


>gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160]
 gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160]
          Length = 913

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/612 (40%), Positives = 369/612 (60%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   + +  W+ K+      SF   T ++D   ++ + +++S    +          
Sbjct: 316 YETVQTWEQLDAWLDKINAAELTSFDTETTSLDPMIAQIVGLSLSVEAGR--------AA 367

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ L+ H   D+        E+L+ LK + E+    K+G ++KYD+ VL  YGI MRG E
Sbjct: 368 YVPLA-HRGPDAP-VQLPRDEVLAKLKPWLESADHKKVGQHLKYDEQVLANYGIEMRGVE 425

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L   +   +++       I  D+++  +  E+A 
Sbjct: 426 HDTLLESYVLESHRT-HDMDSLALRHLGEKTIKYEDVAGKGAQQIGFDEVALDKAAEYAA 484

Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ L+L   L P++  EK L HVY  ++ P   V+ +ME TG+ ID + L+Q S+EI
Sbjct: 485 EDADITLRLHQALYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSSEI 544

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL  P   KT +G   T  + L+++  
Sbjct: 545 ATRLIQLEGEAYELAGGEFNLGSPKQIGQIFFEKLGLPVIKKTPSGAPSTDEEVLQKL-A 603

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N++T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 604 EDYPLPKVLLEHRGLSKLKSTYTDKLPRMVNRQTGRVHTNYAQAVAVTGRLASNDPNLQN 663

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 664 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDIHRATA 723

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +EIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 724 SEIFNVTPLEVSSDQRRVAKVINFGLIYGMSAFGLASNLGITRDAAKMYIDRYFARYPGV 783

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 784 ARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKM 843

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   +ED K+ T+M++Q+HDEL+ EVP+ E++   + +   M         L+VPL
Sbjct: 844 SMIAVQNWIEDSKIGTRMIMQVHDELILEVPDAELSEVRKRLPELMCGVA----ALKVPL 899

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 900 VAEVGTGLNWEE 911



 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 105/257 (40%), Positives = 155/257 (60%), Gaps = 9/257 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  +G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPEGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP+YKANRP +PE L  Q+  + +A +A G P + I+  EADD+I T   
Sbjct: 67  AKGKTFRDDWYPEYKANRPSMPEDLARQIEPIHVAVRALGWPLLMIERVEADDVIGTLCT 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK G  V + + DKDL QLVS    L +T+  E +D + V+ K+G+PPE+++   +L 
Sbjct: 127 EAEKLGMNVVVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVVAKFGVPPERIIDYLSLV 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ I+ +AS IK     EN+    +   ++RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYDSLDGIVEHASEIKGAV-GENLRRALDFMPMARKL 245

Query: 247 VMLRTDVPITIPLEHLI 263
           V +     +    EHL+
Sbjct: 246 VTVERHCDLN---EHLV 259


>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
 gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
          Length = 928

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/619 (38%), Positives = 369/619 (59%), Gaps = 22/619 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+   Y  +V    + +W+   +  G  +    TD +D      + I+++          
Sbjct: 319 IDRSLYETVVTQDALDRWIAAAQAEGVVAVDTETDMLDCVSCGLVGISLAVAPNA----- 373

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE---ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                +I +  H   D   +     +   +L+ LK   E++  LK+G N+KYD  VL R+
Sbjct: 374 ---ACYIPVG-HGGTDMFAERPAQLDKALVLAKLKPLLEDDAVLKVGQNLKYDMTVLRRH 429

Query: 480 GISMRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           GI +  ++D ++MS+ L++G+S   H +   A++ L +   + K+++ + K+ I   ++ 
Sbjct: 430 GIEVVPYDDTIVMSFDLEAGKSLSGHGMDEAARQHLGHECISFKDVVGTGKNQISFAEVP 489

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +  E+A E+++V L+LW   + ++  E    VYE +D+P++ V+++ME  GI++D++ 
Sbjct: 490 LPRATEYAAEDADVTLRLWKRFKARIANEGTNRVYELVDRPLVGVIAKMEHQGIKVDREA 549

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++SAE +  + +LE  I++++G+ F + S +QLG ILF K+ +  G K K+G + T  
Sbjct: 550 LSRLSAEFTAGIAALETEIHEIAGQPFAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDV 609

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LEQ+     PI   +LEWRQLSK+KSTY D+L   INK + RVHT YSL    TGRL+
Sbjct: 610 TILEQLKAQGAPIAAKVLEWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLTGAQTGRLS 669

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T++G++IR AF++ P   +++ADYSQIELR+ AH+A +  L + F   
Sbjct: 670 STDPNLQNIPIRTEVGRQIRHAFVAEPGHVILAADYSQIELRLAAHMADVPALKEAFAAG 729

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A ++FG    +V+ + R  AKTINF+I+YGIS + LA +L I   EA D I R
Sbjct: 730 EDIHAATAEQLFG----EVNRETRGRAKTINFAILYGISRWGLAGRLEISADEAQDMISR 785

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y+ RFPGI  YI +T    R+ GY ET+FGR+  +  I +     R   ERAAINAPIQG
Sbjct: 786 YYERFPGISIYINETIEKARERGYTETLFGRKTWFPRIKASIQHERQGAERAAINAPIQG 845

Query: 895 SAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           ++ADI +RAM+ +  +LE   L   +MLLQ+HDELVFEVPE ++  AS ++   ME A  
Sbjct: 846 TSADIIKRAMVRMGPALEAAGLSGVRMLLQVHDELVFEVPEGDVDAASAVVRRVMETAAE 905

Query: 954 PKINLRVPLKVNIKVSNNW 972
           P + L VPL V I    +W
Sbjct: 906 PIVTLSVPLGVEIGTGPSW 924



 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 140/286 (48%), Positives = 195/286 (68%), Gaps = 1/286 (0%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +NHL+LVDGS +I+RA++  P L+ +H G PV A+ G+  MLWKL +   K    +H AV
Sbjct: 3   QNHLYLVDGSGYIFRAYHQLPPLTNRH-GQPVGAVYGYTTMLWKLAEELGKAEGPTHLAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           I D  + TFRN++Y  YKANRP  PE L+PQ P++R AT+AF +P IE  G+EADDIIA+
Sbjct: 62  ILDKGSHTFRNDMYDQYKANRPPAPEDLVPQFPMIRDATRAFSLPCIEEDGYEADDIIAS 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           YT  A   G+ VTI+S+DKDLMQL+ P   +YDT+K E+   ++V+ K+G+ PE++  + 
Sbjct: 122 YTRAAVAAGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMGKFGVQPEQLGDVL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS+DN+PGIPGIG KTAA L+ EYG LE  L  A  +K+ K +EN++ +A+ ARLS
Sbjct: 182 ALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALDAAPSMKKSKMQENLIAHADMARLS 241

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           R+LV L   + +  PLE L L+      L +FL+   F  L+NR+ 
Sbjct: 242 RRLVALHDAMDLPEPLEELTLKGIPPEPLQTFLEHHGFKTLLNRLG 287


>gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 913

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 301/982 (30%), Positives = 491/982 (50%), Gaps = 98/982 (9%)

Query: 17  YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           +RAFYA P+ +     G   NA+ GF +M   LL+N R     +H AV FD P  TFR E
Sbjct: 3   FRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLENERP----THVAVAFDLPGGTFRTE 58

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
            Y +YK  R + P+  L Q+ L+    +A G+ A+   G+EADDI+AT    A+ EG  V
Sbjct: 59  EYAEYKGTRDETPQPFLGQVELIEEVLEAMGVKALTAPGYEADDILATLAASAQTEGMEV 118

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
            + S D+D  Q V+    +   VK      ++    V  ++G+ PE+   L AL G++ D
Sbjct: 119 LLCSGDRDSFQTVTERCTVLYPVKGVSTLRRMTPAEVEGRYGVTPERYPHLAALVGETSD 178

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
           N+PG+PG+G KTAA  +  Y  L+ ++ +A +IK K   +++ ++ +    +R+L  L T
Sbjct: 179 NLPGVPGVGPKTAAKWINLYDGLDGVIAHADQIKGKAG-QSLRDHLDDVMRNRRLNHLLT 237

Query: 252 DVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTE 310
           D+ + + P + L +   +   L    +ALEF  L  R                       
Sbjct: 238 DLDLGVAPRKDLRVSGADRADLARVFEALEFRTLHQRA---------------------- 275

Query: 311 NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK 370
                          ++T  F+  S+    +  E +     LE L+  S   + +D    
Sbjct: 276 ---------------LRTLTFTDTSNHAEPVEGEASGPLGALESLELAS---LGHD---- 313

Query: 371 IVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
            +  + + QW++   +   G+ S  +  D +     KP+    + +   D     V  + 
Sbjct: 314 -LAARGLSQWLETNLSADDGNGSRLLGVDVVGVL--KPVEGDAALVSLSD----GVRAVA 366

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-E 487
           IDL+    +D            + L +   +    K+  + K     L   G++M G   
Sbjct: 367 IDLTKILPEDE-----------AALAELLADVERPKLVADAKGSWHALRARGLTMDGVVA 415

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR----------KSSIPIDKI-SDS 536
           D  L  Y+    + S+D+ ++ Q+WL      + + +          +S+  +D + SD+
Sbjct: 416 DPSLAGYLCRPEQRSYDVDTLTQRWLGIDLAVVGEGQNQADAGSSQSQSAFDLDALASDA 475

Query: 537 QVQEH--AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
               H  +   + V+L L ++L  ++     L ++  L+ P+   ++ ME  GI +D  +
Sbjct: 476 VPAAHLASARRAAVLLPLQVVLDEQMADRDALGLFADLEMPVAATLTVMEDVGIAVDDAV 535

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L     E+   +    E  Y  +G + NLSSPKQL  +LF +LK P   KTKTG + T A
Sbjct: 536 LAVRETELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMPKTRKTKTG-YTTDA 594

Query: 655 QDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + L  +     +P ++N+LE R   K++ T  + L   I +   R+HT +      TGRL
Sbjct: 595 EALAGLYAKTSHPFLENLLEHRDAIKLRQTV-EGLRKAI-QSDGRIHTTFQQTIAATGRL 652

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP + + G +IR+AF +    + L++ADYSQIE+RI+AH++    L + F 
Sbjct: 653 SSTDPNLQNIPARNEEGMRIRQAFTVGEGYECLMTADYSQIEMRIMAHLSGDQALIEAFR 712

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D+HR VAA + G++++ V+ Q R H K +++ + YG+S F LA QL I  +EAAD  
Sbjct: 713 SGEDLHRYVAALVHGIDVDDVTAQQRSHVKAMSYGLAYGLSTFGLARQLGIGNAEAADLR 772

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF  +H+Y+E      R++GY +T+FGRR +  ++ S     R + ERAA+NAPI
Sbjct: 773 NAYFARFGRVHDYLESVVEQARRDGYTQTMFGRRRYLPDLTSDNRQRREMAERAALNAPI 832

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI ++AMI V ++L +  L++++LLQIHDEL+ EV   E+     ++   M  A 
Sbjct: 833 QGSAADIVKKAMIDVDRALSEQGLSSRVLLQIHDELLVEVASAEVEAVETLLKEQMGGAA 892

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPL V +     W+E
Sbjct: 893 ----ELSVPLDVAVGRGRTWRE 910


>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 916

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 371/625 (59%), Gaps = 24/625 (3%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           K  Q P++   YT +   + +Q+W+ KL+     +    T ++    ++ + I+++    
Sbjct: 307 KQQQLPVDRSLYTNLSTEEALQEWLDKLDKAELYAIDTETTSLKYMEAEIVGISLAVAPN 366

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
                   E  +I L+     D  G    L ++ +L  +K   E+E   K+G N+KYD  
Sbjct: 367 --------EACYIPLA----HDYAGAPEQLDRDWVLQKMKPLLEDETPKKVGQNLKYDAH 414

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
           VL  Y I + G   D ML SYVL+S  S H++  +A+ +L +     + I       +  
Sbjct: 415 VLKNYDIELNGIAHDTMLESYVLNSTASKHNMDDLAKHYLGHECIDFESIAGKGAKQLTF 474

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I   Q  E+A E++++ L+L  +L P+L   E LL +Y++++ P++ V++ ME  G  
Sbjct: 475 NQIPVEQAGEYAAEDADITLRLHQVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGAS 534

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ++ D L Q S+EI + L  LE   +D++GE FNL S KQL  I F KL+ P   KT  GQ
Sbjct: 535 VNADKLHQQSSEIEQRLQELERKAHDIAGEVFNLGSTKQLQAIFFEKLELPVIKKTPKGQ 594

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L +++  D  + K ILE R L+K+K+TY D LP  IN ++QRVHT Y  A T 
Sbjct: 595 PSTAEEVLVELSH-DYELPKVILEHRGLAKLKNTYTDKLPLMINSKSQRVHTSYHQAVTA 653

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G+KIR+AF +P    L++ADYSQIELRI+AH++    L  
Sbjct: 654 TGRLSSSDPNLQNIPIRNEEGRKIRQAFEAPEGYTLVAADYSQIELRIMAHLSGDKGLLD 713

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+N  DIHR  AAEI  V+   V  + RR AK +NF +IYG+S F LA QL I RSEA 
Sbjct: 714 AFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMSAFGLARQLGIGRSEAQ 773

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +YI +YF R+PG+ +Y+E T+    + GYVET+FGRR++  EINS     R   ER AIN
Sbjct: 774 EYIDKYFDRYPGVKKYMESTRELAAKQGYVETLFGRRLYLPEINSRNGMRRQAAERTAIN 833

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI +RAMI +H+ +++      M++Q+HDEL+FEVP+ ++   S  I   ME
Sbjct: 834 APMQGTAADIIKRAMIKMHQWIQESAHDVHMIMQVHDELIFEVPDGQLDAVSAEIKSIME 893

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A     +L VPL V++   +NWQ+
Sbjct: 894 AAA----DLDVPLLVDVGHGDNWQQ 914



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 164/290 (56%), Gaps = 11/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RAF+A P L+    G P  A+ G  NM+  L    +K    S   V+FD
Sbjct: 16  VILVDGSSYLFRAFHALPPLTNSK-GNPTGAVKGVINMIRSL----KKGYPDSKIIVVFD 70

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN+IYP+YKA+RP +P+ L  Q+  +    +A G+P + I   EADD+I T  +
Sbjct: 71  AKGKTFRNDIYPEYKAHRPPMPDDLRVQIQPIHDIIKAMGLPLLVIDNVEADDVIGTLAH 130

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G    + + DKD+ QLVS    L +T+  E++D++ V  K+G+PPE +V   AL 
Sbjct: 131 EATDQGIETLVSTGDKDMAQLVSEHVQLINTMNNEQLDVDGVQAKFGVPPEHIVDYLALM 190

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETA 240
           GD +DNIPG+P +G KTA  L+   G+LE++      +        K  +  + E+ E A
Sbjct: 191 GDKVDNIPGVPKVGEKTAKALIAGLGSLEDVYSRLDDVATLDFRGAKSMKAKLEEHKEQA 250

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            LS++L  ++TDV +   L  + +++ +  +L+   +  EF   I  ++T
Sbjct: 251 FLSKELATIKTDVELEWGLGDIKIDEPDNKKLLELYQECEFKTWIKELST 300


>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 922

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/625 (39%), Positives = 369/625 (59%), Gaps = 37/625 (5%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  +++    + W+QK+E     +    T ++D   ++ + I+++            E 
Sbjct: 320 GYETVLDWPAFENWLQKIENAPLTALDTETTSLDPLAARIVGISLAVAPG--------EA 371

Query: 427 IFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
            ++ L+     D  G        E+L+ LK + E+    KIG ++KYD+ VL  +GI++ 
Sbjct: 372 AYLPLA----HDYPGVPAQLPCDEVLARLKSWLESPGHAKIGQHLKYDQHVLANHGIALA 427

Query: 485 GFE-DIMLMSYVLDSGRSS---HDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
           G   D +L SYVL+SG+     HD+  +A + L       + +     + I  ++++  Q
Sbjct: 428 GVRHDTLLQSYVLESGKDGVRGHDLGQLATRHLGLATIPYEALCGKGANQIGFEQVAIGQ 487

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             E+A E++++  +L  +L P+++ +  L  VY  ++ P+ D++ +ME  G+ ID +LL 
Sbjct: 488 AAEYAAEDADLCQRLHAVLYPQIVADAGLARVYAEIEIPVRDILFRMERQGVLIDGELLT 547

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + S EI K LL LE   +  +G+ FN++SPKQL +ILF KL  P   KT +G   T  + 
Sbjct: 548 RQSHEIGKRLLDLEARAHAAAGQPFNVNSPKQLAEILFDKLGLPVKKKTPSGTPSTDEEV 607

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L ++   D P+ K +LE RQL+K+K TY D LP  +N  T RVHT Y+ A  +TGRLAS 
Sbjct: 608 LSELAL-DYPLPKILLESRQLAKLKGTYTDKLPKMVNAGTGRVHTSYAQAVAVTGRLASS 666

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T  G++IR AFI+PP   L+SADYSQIELRI+AH+++   L + F    D
Sbjct: 667 DPNLQNIPVRTAEGRRIRAAFIAPPGSSLVSADYSQIELRIMAHLSEDARLLEAFAQGED 726

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +HR  AAEIFGV    V P  RR AK INF +IYG+S F LA +L + R  A  YI+RYF
Sbjct: 727 VHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIYGMSAFGLARELDLERGAAQAYIERYF 786

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  Y+  T+   R  GYVET+FGRR+   EI S ++  R   ERAAINAP+QGSA
Sbjct: 787 ARYPGVARYMATTREAARTQGYVETVFGRRLWLPEIRSSQAGRRQGAERAAINAPMQGSA 846

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI+V   L+  +L T++L+Q+HDELV EVP++E+            +  LP++
Sbjct: 847 ADLIKSAMIAVQGWLDAERLQTRLLMQVHDELVLEVPDDELARV---------RGELPRL 897

Query: 957 -----NLRVPLKVNIKVSNNWQEEN 976
                +LRVPL V++ V  NW E +
Sbjct: 898 MTDFASLRVPLVVDVGVGANWDEAH 922



 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 105/282 (37%), Positives = 156/282 (55%), Gaps = 3/282 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R     P  A+ G  NML +L  + +   I ++ A IFD
Sbjct: 4   LLLVDGSSYLYRAFHAMPDL-RTTKNEPTGALHGVLNMLRRLESDYQAAGI-TYKACIFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP+YKANRP +P+ ++ Q+  +  A  A G P + I G EADD+I T   
Sbjct: 62  AKGKTFRDDWYPEYKANRPPMPDDMVRQIEPLNAAIAALGWPLLSIDGVEADDVIGTLAT 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G  V + + DKDL QLV P   L +T+  E +D   V  K+G+PPE++V   AL 
Sbjct: 122 QAAAAGIEVVVSTGDKDLAQLVGPHVTLINTMSNEALDEAGVRAKFGVPPERIVDYLALI 181

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTA   L +YG+L+ ++  A+        +N+    +   L+R+L
Sbjct: 182 GDAVDNVPGVDKVGPKTAVKWLDQYGSLDGVIAAAA-AIGGVVGQNLRRSLDFLPLARRL 240

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           V +R D+ + + L  L     +  RLI      E    +  V
Sbjct: 241 VSVRCDLELPLALRELAPRPADRERLIELFAHYEMRSWLREV 282


>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
          Length = 926

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/612 (40%), Positives = 361/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   +    W+ K+      +F   T ++D   ++ + ++ S ++        V   
Sbjct: 329 YMTVQTWEQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFS-VEPGHAAYVPVAHR 387

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
             D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G E
Sbjct: 388 GPDMPAQLPRD---------EVLAKLTPWLEDASKKKLGQHLKYDAQVLANYGIALNGIE 438

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D++   Q  E+A 
Sbjct: 439 HDTLLESYVLESHRT-HDMDSLALRHLGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAA 497

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S+EI
Sbjct: 498 EDADITLQLHHALYPQIAREPGLSRVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEI 557

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++  
Sbjct: 558 ATRLIELEQQAYGLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL-A 616

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 617 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQN 676

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+PP  K++SADYSQIELRI+AHI++   L + F +  DIHR  A
Sbjct: 677 IPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATA 736

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 737 AEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPGV 796

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 797 ARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 856

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   LE   L  +M++Q+HDELV EVPE E++    I+   + +       L+VPL
Sbjct: 857 SMIAVDDWLERGGLRARMIMQVHDELVLEVPESELS----IVREKLPEMMCGVAKLKVPL 912

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 913 VAEVGAGENWEE 924



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 RAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/533 (43%), Positives = 334/533 (62%), Gaps = 10/533 (1%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
           +++L+ LK   EN   LK+G N+KYD  +L  +GI++RG  ED ML SYVLDS  + HD+
Sbjct: 382 EQVLAKLKPILENADILKLGQNLKYDSNILCNHGITLRGITEDTMLESYVLDSVGTRHDM 441

Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-I 561
            S+A K+L       ++I       +  ++I+  Q   +A E+++V L+L  +L PKL  
Sbjct: 442 DSLALKYLGRGTTKFQDIAGKGAKQLTFNQIALEQAAPYAAEDADVTLRLHEVLSPKLKA 501

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
           V +L  +Y  L+ P++ V+S++E  G  I +  L   S E++  L SLE    +L+G+ F
Sbjct: 502 VPRLHQLYAELEVPLVAVLSRIERNGAYISRQSLADHSHELAGRLESLEARAQELAGQAF 561

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NL SPKQLG+ILF KL  P   KT  G   T  + L ++   D P+   ++E+R LSK+K
Sbjct: 562 NLGSPKQLGEILFDKLGLPVIKKTPKGAPSTAEEVLLEL-AEDYPLPSVLMEYRSLSKLK 620

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D LP  I+  T RVHT Y  A T TGRL+S +PNLQNIPI+T+ G++IR+AF++P 
Sbjct: 621 STYTDRLPEVIDPDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPE 680

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            +++++ADYSQIELRI+AH+++   L + F   LD+H   AAE+FGV +  V+   RR A
Sbjct: 681 GRRILAADYSQIELRIMAHLSRDAGLLRAFSEGLDVHSATAAEVFGVELNDVTVDQRRKA 740

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K INF +IYG+S F LA QL I R EA +YI+RYF R+PG+ +Y+ +T+    + GYVET
Sbjct: 741 KAINFGLIYGMSAFGLARQLHIGRGEAQEYIERYFSRYPGVADYMARTRAEAHERGYVET 800

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
            FGRR+   EIN+     +   ER AINAP+QG+AADI ++AMI+V   L+D  L   ++
Sbjct: 801 HFGRRLQLPEINAKNKQRQLAAERTAINAPMQGTAADIIKKAMIAVDAWLQDSSLDALLI 860

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +Q+HDELVFEV E  +   S+ +   M         L VPL V   V  NW E
Sbjct: 861 MQVHDELVFEVAETAVAQLSEALPSLMADVA----ALEVPLLVEAGVGANWDE 909



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 196/404 (48%), Gaps = 35/404 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS+++RA++A P L+    GL   A+ G   M+ KLL +   + +     V
Sbjct: 3   DKRLILVDGSSYLFRAYHALPPLTNSK-GLNTGAVKGVIGMIRKLLADYPDDQVV----V 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRNEIY +YKANRP +P+ L  Q+  +     A G+P + + G EADD+I T
Sbjct: 58  VFDAKGPTFRNEIYSEYKANRPPMPDELREQIEPIHGIIHAMGLPLLCVPGVEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A      V + + DKD+ QLV+    L +T+    ++ + V++K+G+PPE ++ L 
Sbjct: 118 LAARAADADRPVLVSTGDKDMAQLVNDHVTLVNTMTNTVLNRDGVVEKFGVPPELIIDLL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI------LINASRIKQKKRRENILEYA 237
           AL GD +DNIPG+ G+G KTA  LLQ  G ++ I      + + S    K     + ++ 
Sbjct: 178 ALMGDKVDNIPGVAGVGEKTALALLQGIGGVDAIYGALDQVADLSVRGAKTLAAKLEKHR 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN----------- 286
           + A LS +L  + TD  + +  E L+    +   LI + + +EF   ++           
Sbjct: 238 DEAELSYRLATIETDCDLPLSEEDLVSAAPDRDALIGYYQDMEFKAWLDEQLSDDAPEDH 297

Query: 287 -RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
                  D D   +E +V+D  +  ++             IK   F +   +T+ +N  Q
Sbjct: 298 LEADADSDHDGDTLEVIVIDEMSVLDQWF---------DDIKARGFFAFDTETTSLNYMQ 348

Query: 346 TPQKLFLE--RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387
                F    R    +  P+ +D Y    +  D +Q + KL+ I
Sbjct: 349 ARLVGFSMAIRPGTAAYVPLGHD-YPGAPDQLDFEQVLAKLKPI 391


>gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916]
 gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916]
          Length = 1007

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 340/1050 (32%), Positives = 524/1050 (49%), Gaps = 126/1050 (12%)

Query: 2    QKENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
            Q +  L LVDG S  +R+FYA        L+ K DG+P +   GF   L  LL N  K  
Sbjct: 5    QDKPLLLLVDGHSLAFRSFYAFSKGGEGGLATK-DGVPTSVTYGF---LKALLDNC-KSL 59

Query: 57   IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGF 115
                 A+ FD    TFR++  P+YKA+R   PE+    L  L  +  Q   +P     GF
Sbjct: 60   TPQGVAIAFDTAEPTFRHKADPNYKAHRDTAPEVFFQDLNQLQEILRQQLQLPLCMAPGF 119

Query: 116  EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDI 165
            EADD++ T    A   G+ V I+S D+DL QLV  +     +Y        +     I+ 
Sbjct: 120  EADDVLGTLANRAANAGWRVRILSGDRDLFQLVDDSRDIAVMYMGGGPYARSSGPMLINE 179

Query: 166  EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI--LINASR 223
            E V+ K G+ P  +V L+ALTGDS DNIPG+ G+G KTA  LL+E G+L+ +  ++    
Sbjct: 180  EGVVAKLGVVPTSVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENGDLDAVYRVLAEVE 239

Query: 224  IKQKKRRENILEYA---------ETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLI 273
             +  K     ++ A         + A LSR+L  +  D+P+  P E  L L   +G  L 
Sbjct: 240  AEGPKASRGAIKGALKGKLSNDRDNAYLSRQLAEILVDIPL--PEEPALELGPVDGEGLQ 297

Query: 274  SFLKALEFTKLINRV---ATTYDCD--AAN---IEPVVLDINTTENKGIAIETEIDR--- 322
              L+ LE   L+ +V     T+     AAN   +E      + T+    +  ++ D+   
Sbjct: 298  QQLEMLELNSLVRQVPAFVATFSTGGLAANRHLVESAKTSSSKTKASASSSTSDPDQAAA 357

Query: 323  -DTTIKTSQFSSLSDQTSKINSEQTPQKL--FLERLQKLSQ--YPINNDSYTKIVNTKDI 377
             D +      +SL D   ++ +  TP +L   +ERL        P+  D+      T D+
Sbjct: 358  NDPSTSPESSASLPDLQPELIT--TPAQLTGLVERLMACRDPLAPVAVDT-----ETSDL 410

Query: 378  QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
              +  +L  +G      + D        P+          +D + + E + +D       
Sbjct: 411  NPFKAQLVGVGVCWGADLKD----LAYIPVGHMAPAAPDGEDAAGEPEQLALD------- 459

Query: 438  DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVL 496
                       +L  L  +  +    K   N KYD+L+L R+G+++ G   D +L  Y+ 
Sbjct: 460  ----------AVLQALAPWLASSDHPKALQNAKYDRLILLRHGLTLGGVVMDTLLADYLR 509

Query: 497  DSGRSSHDIASIAQKWLSYT----------RKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D+  + H +  +AQ+    T           K+   S  +++P+D     Q   +   + 
Sbjct: 510  DAA-AKHGLDLMAQRDYGITPTLFTDLVGKAKDGKASSFAAVPVD-----QAALYCAMDV 563

Query: 547  NVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            ++  +L L LR +L  + E+L  + E+++ P+  V++ ME TGI+ID   L+++SAE+  
Sbjct: 564  HLTRRLALDLRQQLTSMGEQLPALLEQVELPLEPVLALMEATGIRIDVPYLQELSAELGA 623

Query: 605  NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINC 662
             L  LE    D+ G  FNL+SPKQLG++LF  L        +TKTG W T A  LE++  
Sbjct: 624  TLERLETEAQDVVGTSFNLASPKQLGELLFDTLGLNRKKSRRTKTG-WSTDATVLEKLE- 681

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            GD+P++  +LE R LSK+KSTY ++LP  +   T RVHT ++ A T TGRL+S  PNLQN
Sbjct: 682  GDHPVVPLLLEHRVLSKLKSTYVEALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQN 741

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
            IP++T+  ++IR+AF+     +L+SADYSQIELRIL H++    L Q + +  D+H + A
Sbjct: 742  IPVRTEFSRRIRKAFLPQEGWQLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTA 801

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
              +     ++VS   RR  KTINF +IYG+   R A +  + +  A D++ +Y  R+P +
Sbjct: 802  RLLL--EKDEVSADERRLGKTINFGVIYGMGAQRFARETGVSQVVAKDFLAKYKQRYPKV 859

Query: 843  HEYIEKTKNFVRQNGYVETIFGRR--IHYD-------------EIN---SPKSSIRNINE 884
              ++E  +      GYVETI GRR   H+D             EI+   + +  +     
Sbjct: 860  FAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQL 919

Query: 885  RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
            RAA NAPIQGS+ADI + AM+ +  +L+   L  ++LLQ+HDELV EV    + T  Q++
Sbjct: 920  RAAANAPIQGSSADIIKLAMVQLQTALQQQGLPAQLLLQVHDELVLEVEPAALDTVRQLV 979

Query: 945  VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            V +ME A    + L VPL V      NW E
Sbjct: 980  VQTMENA----MTLSVPLVVETGSGANWME 1005


>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
          Length = 926

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/616 (40%), Positives = 367/616 (59%), Gaps = 33/616 (5%)

Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425
           N   +Q W Q    L TI +A   +F   T ++D   ++ + +           SF VE 
Sbjct: 328 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMLAQIVGL-----------SFSVEP 376

Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               ++ L+ H   D   +     E+L+ L  + E+    K+G ++KYD  VL  YGI++
Sbjct: 377 GHAAYVPLA-HRGPDLPAQ-LPRDEVLAKLTPWLEDASRKKLGQHLKYDAQVLANYGIAL 434

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++   +  
Sbjct: 435 NGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLDKAS 493

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           E+A E++++ LQL   L P++  E  L+ VY  ++ P+  V+ +ME TG+ ID D L + 
Sbjct: 494 EYAAEDADITLQLHRALYPQVAREPGLMRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQ 553

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S+EI+  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+
Sbjct: 554 SSEIATRLVELEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQ 613

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +P
Sbjct: 614 KL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDP 672

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T  G++IR AFI+PP  K++SADYSQIELRI+AHI++   L + F +  DIH
Sbjct: 673 NLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIH 732

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R
Sbjct: 733 RATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLR 792

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD
Sbjct: 793 YPGVAHYMEETRARAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAAD 852

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + +MI+V   LE   L  +M++Q+HDELV EVP+ E++   + +   M         L
Sbjct: 853 LIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPDGELSVVREKLPEMMCGVA----KL 908

Query: 959 RVPLKVNIKVSNNWQE 974
           +VPL   + V  NW+E
Sbjct: 909 KVPLVAEVGVGENWEE 924



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V   +L 
Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L+R+L
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARQL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 976

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 328/1025 (32%), Positives = 524/1025 (51%), Gaps = 120/1025 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59
           L LVDG S  +R+FYA    S+  DG        P +   GF   L    +N   E +  
Sbjct: 13  LLLVDGHSLAFRSFYA---FSKGVDGGLTTKEGFPTSVTYGFLKSLLDNCKNINAEGVC- 68

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118
              + FD    TFR+E+ P+YKANR   P++    +  + +   ++  +P  +  GFEAD
Sbjct: 69  ---ITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILKESLNLPIFKSPGFEAD 125

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168
           D++ T    A  +G+ V I+S D+DL QLV     +Y           +     ++   V
Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I   A  I QK 
Sbjct: 186 KEKLGVYPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIY-KALDIIQKD 244

Query: 229 R------------RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                        RE +      A LSR L  +  +VP+ +      L   N   L   L
Sbjct: 245 EDKKYQGFIKGAVREKLKNDKFNAYLSRDLAKIDVEVPLVLS-NGYELNQINQDALSESL 303

Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
           + LE + L+ +V                  N+  +KG         +   +  Q    S 
Sbjct: 304 QKLELSTLLRQVDI---------------FNSAFSKG-------GFNKNNEEKQKKKESK 341

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE-TIGSASFKII 395
            ++ IN E+T  +     + K+    +N        N K + Q V++LE T    +    
Sbjct: 342 VSASINLEETEHE-----IPKIKVNIVN--------NFKLLDQLVKRLEITKEIVALDTE 388

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
           T++++   ++ + I     ++ +D        +I LS H SQ         +++   L+ 
Sbjct: 389 TNSLNPLDAELVGIGFCLGEEIND------LFYIPLS-HQSQKKEMNQLAIEDVFFNLRS 441

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514
           + E+    K   N K+D+ + + +G+++RG   D +L  Y+L++ +  H ++ I+ +   
Sbjct: 442 WIESPEKEKTLQNCKFDRQIFYNHGLNLRGVTFDTLLADYILNN-QEKHGLSEISFREFG 500

Query: 515 Y---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVY 569
           +   T KE +   K    +D I+D+    +   +  +  ++  + + +   E   L  ++
Sbjct: 501 FKPPTFKETVGKNKDFSFVD-INDAST--YCGYDVLLTFKIAKIFKERFNNENKDLTKLF 557

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
           + ++ P+  V+S+ME+ GI+ID   L ++S E+   L ++EEN+++++ ++FNLSSPKQL
Sbjct: 558 KEIELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTLENIEENVFEIAKQEFNLSSPKQL 617

Query: 630 GDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           G+ILF KL        KTKTG W T A  LE++   ++ II  +++ R LSK+ STY D+
Sbjct: 618 GEILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VEEHEIIPFLIKHRTLSKLLSTYIDA 675

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LPN I+++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+S
Sbjct: 676 LPNLISEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLS 735

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELRILAH+A    L   F  + DIH + A  IF    E ++   RR  KTINF 
Sbjct: 736 ADYSQIELRILAHLANEEILINAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFG 793

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           +IYG+   + A    +  +EA +++ +Y  R+  I +++E  +      GYVETIFGR+ 
Sbjct: 794 VIYGMGIKKFARSTGVSTTEAKEFLIKYKERYAKIFKFLEFQERLALSKGYVETIFGRKR 853

Query: 868 HY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
            +                  D   + K+ +   + RAA NAPIQGS+ADI + AM+ ++K
Sbjct: 854 EFKFDKNGLGRLIGKDPYEIDLQTARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNK 913

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            L +  +  KMLLQ+HDEL+FEV  + +     ++  +ME      + L VPL V+I V 
Sbjct: 914 KLLEMNIPVKMLLQVHDELLFEVQPDFLEITKDLVKETMEDC----VKLNVPLLVDIGVG 969

Query: 970 NNWQE 974
           NNW E
Sbjct: 970 NNWME 974


>gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 778

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 294/873 (33%), Positives = 467/873 (53%), Gaps = 105/873 (12%)

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDI 165
           ++I GFEADDI+ TY+ IA  EG    II+ DKD  QLV+    +Y T K     E+I  
Sbjct: 1   MDIDGFEADDIVGTYSKIARDEGLETVIITGDKDYFQLVNDDVIVYLTRKGISQMEEITE 60

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           E + + +G+ P++++ ++ L GD  DNIPG+ GIG KTA   +++YG++E++  N   I 
Sbjct: 61  EKIKEDYGLSPKQLIDVKGLMGDKSDNIPGVDGIGEKTALKYIKKYGSMEDLYENLDDIS 120

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            KK +EN+                                     R I+FL     +K I
Sbjct: 121 GKKTKENL----------------------------------ENSRQIAFL-----SKKI 141

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
             + T          PV  +I+               D  +K     SL ++ SK N  +
Sbjct: 142 GTIVTN--------APVDYEIS---------------DLRVKDPDMESLKEKFSKYNFNK 178

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
                FLE+ +  S        ++      D    +  +E      FK I +  +  HSK
Sbjct: 179 -----FLEKFEDGSDVQREELDFSYSFTDDDFS-VIDDIEKDKIFYFKTIFENDNYIHSK 232

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              IAI +   K          FI                 ++ +   KK+FE+E+  K+
Sbjct: 233 AFKIAIKSPSSK---------TFI-------------YNPDQKFVDNFKKYFEDENINKV 270

Query: 466 GHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521
             +IK D ++ ++ GI +   ++DIMLM Y++D  RSS+D+ + +Q +L Y     +++L
Sbjct: 271 SFDIKEDIVLFNKLGIEINFPYDDIMLMHYLIDPSRSSYDLKTFSQAFLKYEVLNEEDLL 330

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
              ++      +S+ ++ ++     N I     +L  KL    +  +Y+  +  +  V++
Sbjct: 331 GKGRNKKSYKDLSEKELGKYLSSIINAIEDSLDILTDKLKELSMYELYKDCEIKLSKVLA 390

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            MEITG   D++ L+++  E+S  L  LE+ IY+L+G +FN++SPKQL  ILF  L+ P 
Sbjct: 391 DMEITGFVCDKNELEKIKDEVSVELEGLEKIIYELAGSEFNINSPKQLSIILFEDLELPI 450

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T A+ LE++    +PII  I  +R++ K+KSTY +SL   I+    R+ +
Sbjct: 451 IKKTKTG-YSTDAKVLEKLR-DKHPIIGKIERYREMYKLKSTYLESLEECIDG-DGRIRS 507

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +    T TGRL+S EPNLQN+PI+T+ G+KIR+AF +   K LI ADYSQIELR+LAH+
Sbjct: 508 TFKQNVTATGRLSSTEPNLQNLPIRTEEGRKIRKAFKADNEKILIDADYSQIELRVLAHL 567

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A    + + F + +DIH   A+E+F   I++V+   R  AK +NF IIYGIS + L+  L
Sbjct: 568 ANDKKMQEAFSHDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNL 627

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            IPR  A +YI+ Y + +P I +Y++      ++ G+V TIF RR +  EINS   ++R+
Sbjct: 628 NIPRKRAKEYIENYLNTYPQIKKYMKDIVKKAKEEGFVNTIFNRRRYVPEINSKNFNVRS 687

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+N PIQGSAADI + AMI+ +++L+  K+  K++LQIHDE++ E  ++++  A 
Sbjct: 688 FGERVALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIEASKKDLQKAK 747

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +I+  SME+A    +NL+VPL V+I   ++  E
Sbjct: 748 EILKSSMEEA----VNLKVPLLVDIDSGDSMYE 776


>gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39]
          Length = 959

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 328/1010 (32%), Positives = 526/1010 (52%), Gaps = 102/1010 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L+DG S  +RA+YA         R   G+P +   GF   L +++   + E +A    
Sbjct: 8   LILIDGHSLAFRAYYAFGKSRNGGLRTSTGIPTSVCFGFIKSLLEVIDTYKPELVA---- 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E   +YKA+R + P   +  +  ++   + F IP   + G+EADD++ 
Sbjct: 64  IAFDRAEPTFRHEADANYKADRAETPADFIEDINNLQELLEGFRIPIFSVAGYEADDVLG 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY----DTVKEEKIDIEHVIKKWGIP 175
           T        G+ V I+S D+DL QL+      T L+         ++     V +K  I 
Sbjct: 124 TLANRGSAAGYQVKILSGDQDLFQLIDEQKQITVLHLSHGKGSSPQEFAAAQVYEKLSIK 183

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V  +AL GD  D IPG+ GIG KTA  LL EYG+L++I  + ++IK     + + +
Sbjct: 184 PEQVVDYKALCGDKSDCIPGVRGIGEKTAVKLLAEYGSLDSIYESVNQIKGAIANK-LKQ 242

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE---FTKLINRVATT- 291
             E A  S+ +  +  DVP+ I  E   L+  +   LI  LK LE   F   IN++ +  
Sbjct: 243 GQELAYHSQTMARIICDVPLDINWEDCQLQGFDSQELIPLLKQLEFHGFINKINQLQSQF 302

Query: 292 ---YDCD-----AANIEPVVLDINTTENKGIAIETEI--DRDTTIKTSQFS-SLSDQTSK 340
              +D +     +A+  P  L+I+   +     +       DTT++T   + S+  Q   
Sbjct: 303 KGLFDVEINSSISASSPPTELEISENNDNNEDEDVWFFSAEDTTLETKAIAPSIHPQII- 361

Query: 341 INSEQTPQKL--FLERLQKL--SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396
               QTP+ L   + RL+     + P+  D+ T  +  +D       L  IG      ++
Sbjct: 362 ----QTPEALAILVNRLKTHINPEKPVAWDTETTSLEPRD-----ANLVGIGCCWGSELS 412

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D                              +I L+ HT     G+    +++L  L+  
Sbjct: 413 DLA----------------------------YIPLN-HTQ----GEMLNIEQVLEALRPI 439

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            E+E + K   N K+D+L+L   GI+++G   D ML SY+++   SSH++  ++ ++L  
Sbjct: 440 LESEEYPKTLQNAKFDRLILRSQGITLKGVVFDTMLASYIINP-ESSHNLTDLSLRYLP- 497

Query: 516 TRKEILKSRKSSIPIDK-ISDSQVQEHA-IENSNVILQLWLLLRPKLIVE---KLLHVYE 570
               + +S    +P  K I+D  +   A     +V     +  + + I++   +L  +  
Sbjct: 498 DLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQITQKMQDILKDLPRLNDLLR 557

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
           ++++P+  +++ ME  GI+ID D L Q+S ++ + L +LE+  +  +GE FNL SPKQL 
Sbjct: 558 QVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLEKTSHQAAGEVFNLGSPKQLS 617

Query: 631 DILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           ++LF +L+       KTKTG + T A  LE++   D+P+I +ILE+R LSK+KSTY D+L
Sbjct: 618 ELLFDRLQLDRKKSRKTKTG-YSTDATVLEKLK-HDHPVINSILEYRTLSKLKSTYVDAL 675

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  +   T R+HT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AFI      L+SA
Sbjct: 676 PELVRSDTGRIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSA 735

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRILAH+++   L + +  + D+H + A  +F  + + ++P+ RR  K INF +
Sbjct: 736 DYSQIELRILAHLSQEKVLIEAYNTNQDVHSLTAKLLF--DRDGITPEERRLGKIINFGV 793

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+   R A ++ +  +    +I R+  ++PG+ EY+E  K      GYVETI GRR +
Sbjct: 794 IYGMGAQRFAREVGVSATAGKQFIDRFNSQYPGVFEYLESQKLAAINQGYVETILGRRRY 853

Query: 869 YDEINSPKSSIRNINE----RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           ++ +        N  +    RAA NAPIQGS+ADI + AMI + + L++++   ++LLQ+
Sbjct: 854 FEGLKGRDRDRLNYQDEQMLRAAANAPIQGSSADIIKIAMIKLAEILKNYQ--ARLLLQV 911

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDELVFEVP  E       I  +ME  CL    L VPL V+I    NW E
Sbjct: 912 HDELVFEVPLSEWEELEYQIKSTMEN-CL---FLSVPLVVDIHAGTNWME 957


>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei]
          Length = 615

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 249/613 (40%), Positives = 366/613 (59%), Gaps = 27/613 (4%)

Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           N   +Q W Q    L TI +A   +F   T ++D   ++ + ++ S ++        V  
Sbjct: 17  NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 75

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G 
Sbjct: 76  RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 126

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+A
Sbjct: 127 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGQGAQQIGFDEVPLAQAFEYA 185

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S E
Sbjct: 186 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 245

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 246 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 304

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 305 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 364

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AF++PP  K++SADYSQIELRI+ HI++   L + F +  DIHR  
Sbjct: 365 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMLHISEDESLLRAFAHGEDIHRAT 424

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 425 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 484

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 485 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 544

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE   L  +M++Q+HDELV EVPE+E++    I+   + +       L+VP
Sbjct: 545 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 600

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 601 LVAEVGVGENWEE 613


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/532 (42%), Positives = 341/532 (64%), Gaps = 13/532 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506
           E+++ ++   E+    K+G N+KYD LVL R GI++RG   D ML SY+L     SH + 
Sbjct: 366 EVVAQVQPLLEDATLAKVGQNLKYDALVLRRAGIALRGVVADTMLQSYLLYPAARSHGLD 425

Query: 507 SIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           ++A   L Y   +  E+  + K  I  D+++      +A E++++ LQL+     +L   
Sbjct: 426 ALAADHLGYKMISYSEVAGTGKKQIGFDEVALDVATRYAAEDADITLQLYQRFDAELD-G 484

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            L  ++E ++ P++ V+  ME  G+++D++ L  +SA  S ++  LE+ IY+L+GE+FN+
Sbjct: 485 TLRELFETVEMPLLQVLIDMEWWGVRVDRERLDALSAGFSTSIKQLEQQIYELAGEEFNI 544

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKS 682
           +SPKQLG ILF KL  P G KTKTG W T    L+  N  D + ++  IL++R L+K+K 
Sbjct: 545 NSPKQLGVILFEKLDLPHGKKTKTG-WSTAVDVLK--NLADKHDVVALILQYRSLAKLKG 601

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  I+  + R+HT ++ A T TGRL+S +PNLQNIPI+++ G+ IR AF+    
Sbjct: 602 TYTDALPLLIHPDSGRIHTSFNQAVTATGRLSSSDPNLQNIPIRSEEGRAIREAFVPDAG 661

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           + L++ADYSQIELR++AH+A    L + F    DIH+  A+EIF V  + V  +MRR AK
Sbjct: 662 QVLLAADYSQIELRVMAHMADEPILQESFRQGEDIHQRTASEIFSVFPDMVDSEMRRRAK 721

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           TINF ++YG+  F LA  L I   EA  YI  YF R+P + E+IE+ K F R++ YVET+
Sbjct: 722 TINFGVLYGMGAFSLAKDLGISNKEAKQYIDHYFERYPAVLEFIEQQKQFGREHLYVETL 781

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GRR    +INS    +R+  ER A+N P+QGSAADI + AM+ +H+ L+D +L T+M+L
Sbjct: 782 LGRRCAVSDINSKNGQVRSYAERNAVNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMVL 841

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q+HDELVF+VP++E+     ++V  ME+A    + LRVPL+V++    NW+E
Sbjct: 842 QVHDELVFDVPKDEVDDVVALVVQEMEQA----VELRVPLEVSLGRGANWRE 889



 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 134/294 (45%), Positives = 192/294 (65%), Gaps = 11/294 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     LFL+DGSS+IYRA+YA   LS    G+  NA+ GF  ML K++++   + +A  
Sbjct: 1   MSSAPRLFLIDGSSYIYRAYYAIRHLSTSQ-GMACNAVFGFTKMLLKVVRDHNPDQLA-- 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             VIFD    TFR EIY +YKANR K+PE L+PQ+PL++    AF IPA+E+ GFEADDI
Sbjct: 58  --VIFDAKGPTFRKEIYSEYKANRSKMPEDLVPQIPLIKDVVAAFNIPALEMNGFEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT        G  VT+++ DKDLMQ+VS   CL DT+K+++  +  V +++G  P+K++
Sbjct: 116 IATLARQKSAAGMDVTVVTGDKDLMQVVSDKVCLLDTMKDKQSGLAEVAERFGGTPDKVI 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GDS DN+PG+PGIG KTA  L++E+G++EN+L +  ++K KKR+EN+ E+A+ A
Sbjct: 176 EVQALAGDSSDNVPGVPGIGEKTAKALIEEFGDVENLLAHVDQVKGKKRQENLREFADQA 235

Query: 241 RLSRKLVMLRTDVPIT-IPLEHLILEDCNGPR--LISFLKALEFTKLINRVATT 291
           RLSR+LV L  D+ ++ +P +      C   R  L    K LEF +L +  A  
Sbjct: 236 RLSRQLVTLVDDMDLSGLPAD---FARCEQDREALSELFKTLEFQQLYDEFAVA 286


>gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311]
 gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311]
          Length = 994

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 331/1032 (32%), Positives = 514/1032 (49%), Gaps = 113/1032 (10%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K +G+P +   GF   L    +  +  S+    
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATK-EGIPTSVTYGFLKALLDNCKGLKPNSVT--- 65

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
            + FD    TFR++  P+YKA+R   P      L  L  + T    +P     GFEADD+
Sbjct: 66  -IAFDTAEPTFRHKADPNYKAHRDVAPAHFFQDLEQLQAILTTQLKLPLCLAPGFEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A  +G++V I+S D+DL QLV  +     LY        +     ID   V  
Sbjct: 125 LGTLANRAAADGWSVRILSGDRDLFQLVDDSRNIAVLYMGGGPYAKSSGPTLIDEAGVQA 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228
           K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL++  +L+ +    + ++++  K
Sbjct: 185 KLGVAPTKVVDLKALTGDSSDNIPGVKGVGPKTAISLLKDNDDLDGVYRALAEVEEEGPK 244

Query: 229 RRENILEYA---------ETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLISFLKA 278
                ++ A         + A LSR L  +  D+P+  P E  L L   +G  L   LK 
Sbjct: 245 ASRGAIKGALKAKLANDKDNAYLSRHLAEILVDIPL--PKEPKLDLGSVDGDGLSQRLKE 302

Query: 279 LEFTKLINRV---ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           LE   LI +V     T+          +L     E + +  E          TS   S  
Sbjct: 303 LELNSLIRQVPNFVATFSSGGLAANAHLLAKAEEEQRTVKDEA--------ATSAQPSGP 354

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395
           +  S+ +S QT   L    +Q L Q        T+++N +D          +   +    
Sbjct: 355 EAISEASSSQTQPVLRPGIVQTLDQL---KALLTQLMNCRD---------PLAPVALDTE 402

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
           T  ++ F ++ + I +      DD ++        + V    D        + +L  L  
Sbjct: 403 TTDLNPFRAQLVGIGMCWGPGSDDLAY--------IPVSHQGDPIPDQLPLETVLQALAP 454

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK--W 512
           +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+  + H + ++AQ+   
Sbjct: 455 WLASGEHPKALQNAKYDRLILLRHGLPLAGVVMDTLLADYLRDAA-AKHGLDAMAQRDYG 513

Query: 513 LSYT--------RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IV 562
           +S T         KE   S  S +P++  +     ++   + ++  +L + L  +L  + 
Sbjct: 514 ISPTLFSDLVGKAKEGKASNFSEVPLESAA-----QYCGMDVHLTRKLAIDLNQQLEALG 568

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +L ++  +++ P+  V++ ME TGI+ID   L+ +S EI  NL  LE +  + +   FN
Sbjct: 569 PQLPNLLSKVELPLEPVLAVMEATGIRIDVPYLEALSCEIGTNLERLEASAKEAAEIDFN 628

Query: 623 LSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           L+SPKQLGD+LF  L        +TKTG + T A  LE++   D+P++  +LE R LSK+
Sbjct: 629 LASPKQLGDLLFNTLGLDRKKSRRTKTG-YSTDATVLEKLEH-DHPVVPLVLEHRVLSKL 686

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           KSTY D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+  
Sbjct: 687 KSTYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQ 746

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
               L+SADYSQIELRIL H++    L Q + +  D+H + A  +   + ++VSP  RR 
Sbjct: 747 DGWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLL--DKDEVSPDERRL 804

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            KTINF +IYG+   R A +  + +SEA D++ +Y  R+P +  ++E  +      GYVE
Sbjct: 805 GKTINFGVIYGMGAQRFARETGVSQSEAKDFLSKYKQRYPKVFAFLELQERLALSQGYVE 864

Query: 861 TIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRR 902
           TI GRR   H+D             EIN   + +  +     RAA NAPIQGS+ADI + 
Sbjct: 865 TILGRRRPFHFDRNGLGRLNGMDPLEINLEVARRGGMEAQQLRAAANAPIQGSSADIIKL 924

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ +   LE   L  ++LLQ+HDELV E   E +    +++V +M+ A    I+L VPL
Sbjct: 925 AMVQLQAKLESKNLPARLLLQVHDELVLETEPEALAVVEELVVQTMKNA----IDLSVPL 980

Query: 963 KVNIKVSNNWQE 974
           +V      NW E
Sbjct: 981 EVETGNGANWME 992


>gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 922

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/620 (39%), Positives = 365/620 (58%), Gaps = 27/620 (4%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I++      W+ KL+     +F   T+  DA HS+ + ++ +         ++   I
Sbjct: 315 YEVILDQAHFDAWLAKLDKAPLFAFVTETNGGDAQHSQLVGLSFAV------APYEAAYI 368

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--------HRY 479
            +  S     +   ++T    +L  LK   EN + LK+G + K++  +L           
Sbjct: 369 PLTHSYMGVPEQLDRDT----VLKALKPLLENPNKLKVGQHAKFETNILANCAIGGDQNN 424

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
           GI ++G   D ML SYVLDS  + HD+ S+A K+L  ++   ++I       +  D+IS 
Sbjct: 425 GILVQGIAFDTMLESYVLDSTATRHDMDSLALKYLGQSKTDFQDIAGKGVKQLTFDQISL 484

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDL 594
                +A E+++V  +L   L+ KL     L  V   ++ P++ V++++E  G  +D +L
Sbjct: 485 ELAGPYAAEDADVTFRLHQALQEKLAATPSLGTVLNDIEMPLMPVLARIERQGALVDANL 544

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   S E+ + L++LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT  GQ  T  
Sbjct: 545 LGVQSVELGEKLVALEREAFAIAGEEFNLGSPKQLGVILYEKLGLPVLSKTAKGQASTAE 604

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L ++   D P+ K ++++R LSK+KSTY D LP  IN RT RVHT Y  A   TGRL+
Sbjct: 605 AVLAELAEQDYPLPKVLMQYRSLSKLKSTYTDRLPEQINSRTGRVHTNYQQAVAATGRLS 664

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S++PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L   F ++
Sbjct: 665 SIDPNLQNIPIRTSEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLYAFRHN 724

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R ++  YI R
Sbjct: 725 LDVHRATAAEVFGVELEAVTLDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYIDR 784

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   ++R   ER AINAP+QG
Sbjct: 785 YFARYPGVLAYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPALRKGAERTAINAPMQG 844

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI ++AM++V + L    L  K++LQ+HDELV EV E+ +      I   M  A   
Sbjct: 845 TAADIIKKAMVAVDRWLTTSGLDAKVILQVHDELVLEVREDLVDQVRDEIRQHMSAAA-- 902

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L VPL V + V NNW E
Sbjct: 903 --TLDVPLLVEVGVGNNWDE 920



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 157/282 (55%), Gaps = 12/282 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y +YKANRP +P+ +  Q+  +  + +A G P + +   EADD+I T   
Sbjct: 61  AKGGTFRDALYAEYKANRPSMPDDMRVQIEPLHASVKALGFPLLCVDNVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE+++   AL 
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVAPEQIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA-ALLLQEYGNLENI-----LINASRIKQKKRRENIL-EYAET 239
           GDS DNIPG+PGIG KTA  LL+   G L  +     ++    I+  K     L E+ E 
Sbjct: 181 GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVATLPIRGAKTLAAKLEEHKEM 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           A LS +L  ++TDVP+ + L+ L +   +  +L      LEF
Sbjct: 241 ALLSYELATIKTDVPLDVGLDDLQMGTPDHEKLAELYTLLEF 282


>gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80]
 gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80]
          Length = 525

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/529 (44%), Positives = 340/529 (64%), Gaps = 13/529 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+ S+A +
Sbjct: 1   LKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 60

Query: 512 WLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE--KLL 566
           +L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P LI +  KL 
Sbjct: 61  FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP-LIEQDAKLE 119

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+N Y+L+G+ FNLSSP
Sbjct: 120 QVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSP 179

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+KSTY D
Sbjct: 180 KQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTD 238

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P   K++
Sbjct: 239 KLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIM 298

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           + DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR AK +NF
Sbjct: 299 AVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF 358

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR
Sbjct: 359 GLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRR 418

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIH 925
           +H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E +     K+L+Q+H
Sbjct: 419 LHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVH 478

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DELVFEV E  ++     +   ME A      L VPL       +NW++
Sbjct: 479 DELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQ 523


>gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
 gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
          Length = 905

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 315/986 (31%), Positives = 523/986 (53%), Gaps = 110/986 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K +  P  A+ GF N L  +++    + I + F V     
Sbjct: 8   LLDVSAIMYRAYFANMNFRTKTE--PTGAVYGFVNTLMSIIKEFSPDYIGAAFDV---KR 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           A   R+EIY +YKA R   PE L+ Q+P +      + I   +I+G+EADD++ T     
Sbjct: 63  ASLKRSEIYKEYKAQRESAPEDLIAQIPRIEELLDCYNIERFKIEGYEADDVLGTLAKNL 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------EHVIKKWGIPPEKMVC 181
             +G  V +++ DKDL Q++     +    K E  D        E VI+  G+P +K+  
Sbjct: 123 SAQGVEVYVVTGDKDLAQILDENINIALLGKGEGGDKFKIIRTDEDVIEYLGVPSKKIPD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GDS D IPG+  IG K A  +L++Y  LE I  N  ++ +     K    N++E 
Sbjct: 183 LFGLIGDSSDGIPGVRKIGPKKAIPMLEKYETLEGIYENIDKLTEIAGIGKSLVNNLVED 242

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A +SR+L ++  DVP                        LEF    N    +YD D 
Sbjct: 243 KEIAFMSRELAIICQDVP------------------------LEF----NLKNLSYDID- 273

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            NI+ + L                      K  +F +L  +    N ++  Q++  E+ +
Sbjct: 274 -NIKLLEL---------------------FKILEFKALIKKMGLENGDEKTQEI--EKSK 309

Query: 357 KLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           ++S+     +   K+V  K DI+  V+ L+ +         D +  ++++   IA S+ D
Sbjct: 310 RVSK-----ERTFKVVEGKADIKDMVKSLKKV---------DLVSCYYTE-YGIAFSSFD 354

Query: 416 QKDDTSFKVET-----IFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNI 469
           +  D  F  E      I  ++S+           +  KEI    ++FF+N +   + +N+
Sbjct: 355 K--DYYFPFEKKCESKIGANISLFDPTPVVEDCEINCKEI----QEFFDNYNGEIVTYNL 408

Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
           K    +L+R GIS++  +  M+++Y L S ++  ++  +  + L+    +    +     
Sbjct: 409 KN---ILNR-GISVKNCKLDMMIAYHLISSQTKENV-ELPIEHLTGIELDNYADKFGKEK 463

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            + IS  +  ++  + +  +L+ + +L+ +L    L+ V   ++ P+I+++S MEI GI+
Sbjct: 464 PENISAKEYGKYLCQRTMGLLECYDILKEELEDRNLMKVLNEIEMPLIEILSSMEIKGIK 523

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID +       E+   +  L+E IY+ +GE+FN++SPKQL +ILF KL  P   KTKTG 
Sbjct: 524 IDPEYFSNYEKELGDLIEKLQEKIYEEAGEEFNINSPKQLAEILFFKLNLPPVKKTKTG- 582

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + LE++      I K ILE+R+L+K+K+TY D++P  +     RVHT ++   T 
Sbjct: 583 LSTDEEVLEKLKVDGAEIAKAILEYRKLAKLKNTYVDAIP-KLRDEKDRVHTTFNQIGTT 641

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP+KTD G KIR+ F++     L+  DYSQIELR+LA ++    L +
Sbjct: 642 TGRLSSSDPNLQNIPVKTDEGIKIRQGFVAEKNSVLMGIDYSQIELRVLAQLSGDENLRE 701

Query: 770 VFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            ++NS+D+H + A +IF + + E+VS + R  AKTINFSIIYG + F LA +L I + EA
Sbjct: 702 AYQNSMDLHSLTARKIFELSDEEEVSREERIIAKTINFSIIYGKTAFGLAKELGISQKEA 761

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           ++YI RYF+++P +  + ++   F  ++GY ET FGRR   D INS   +I++  ER A+
Sbjct: 762 SEYIDRYFNQYPKVKGFEKEIVEFTEKHGYTETFFGRRRLIDGINSKNKNIKSQAERMAV 821

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+ IQG+AA+I ++ MI ++K ++D      +LLQ+HDEL+FE+ +E++    + I   M
Sbjct: 822 NSVIQGTAAEIIKKVMIEIYKYIKDRD-GISLLLQVHDELIFEIEKEKLEMYREDIEKIM 880

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
            ++   K +  VPL++N  +  NW E
Sbjct: 881 RESV--KFD-SVPLEINTNIGVNWAE 903


>gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1]
 gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1]
          Length = 913

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/609 (41%), Positives = 371/609 (60%), Gaps = 27/609 (4%)

Query: 377 IQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +Q W Q    LETI +A   SF   T ++D   ++ + +++S    +          ++ 
Sbjct: 319 VQTWEQFDAWLETINAAELTSFDTETTSLDPMIAQIVGLSLSVEAGR--------AAYVP 370

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489
           L+ H   D+        E+L+ LK + E+    K+G ++KYD+ VL  YGI MRG E D 
Sbjct: 371 LA-HRGPDAP-VQLPRDEVLARLKPWLESVEHKKVGQHLKYDEQVLANYGIEMRGIEHDT 428

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENS 546
           +L SYV++S R+ HD+ S+A + L       +E+       I  D+++  +  E+A E++
Sbjct: 429 LLQSYVVESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDA 487

Query: 547 NVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           ++ L+L  +L P++  EK L +VY  ++ P   V+ +ME TG+ ID + L+Q S+EI+  
Sbjct: 488 DITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATR 547

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++   D 
Sbjct: 548 LIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKL-AEDF 606

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQNIP+
Sbjct: 607 PLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPV 666

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F    DIHR  AAEI
Sbjct: 667 RTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQGEDIHRATAAEI 726

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+  Y
Sbjct: 727 FSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGVARY 786

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + +MI
Sbjct: 787 MDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMI 846

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +V K +E+ K+ T+M++Q+HDEL+ EVP+ E++   + +   M        +L+VPL   
Sbjct: 847 AVQKWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVA----DLKVPLVAE 902

Query: 966 IKVSNNWQE 974
           +    NW+E
Sbjct: 903 VGAGLNWEE 911



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/250 (40%), Positives = 153/250 (61%), Gaps = 6/250 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y DYKANRP +P+ L  Q+  + +A +A G P + I+G EADD+I T + 
Sbjct: 67  AKGKTFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLST 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK G  V + + DKDL QLVS    L +T+  EK+D   V+ K+G+PPE+++   +L 
Sbjct: 127 EAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDYLSLV 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L ++ +L+ I+ +A  IK     +N+    +   +++KL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGAV-GDNLRRALDFLPMAKKL 245

Query: 247 VMLRTDVPIT 256
           V +  +  +T
Sbjct: 246 VTVERNCDLT 255


>gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
 gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
          Length = 895

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 312/977 (31%), Positives = 512/977 (52%), Gaps = 96/977 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F++R+++A P L + H+G P   + GF  ++ +L ++  K+ +   FA+  D
Sbjct: 4   LTIIDTFGFLFRSYFALPPL-KNHEGFPTGLLTGFAKLIMQLHRDYPKDYLV--FAL--D 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR +I P YKANRP++P+ L  QL +     +  G   I I+G+EADD+IA+   
Sbjct: 59  SKGENFRKQIDPLYKANRPEMPQDLKLQLEVAIKWVEDMGFKNISIEGYEADDVIASINK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A +    V IIS DKDL QL+   T L++  K+E+I  E  I+K+G+ P + V  Q++ 
Sbjct: 119 QANQLKVNVRIISHDKDLYQLIDRDTFLFNPSKKEEIREEECIEKYGVSPSQFVDYQSIV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG+ G+G K AA LL  Y  L+ I  N  +I QK+ RE +L   E A  SR+L
Sbjct: 179 GDSVDNVPGVKGVGAKGAASLLGAYQTLDGIYENIEKIPQKRIRELLLASKEDAYRSREL 238

Query: 247 VMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           V LR D+     L    + +DC    ++  LK  +   ++ ++          ++   + 
Sbjct: 239 VRLRDDLLEDFDLSKCEMPQDCPLLNILDSLKHYDLNSILKKLHKNPITKKKIVQKQSMQ 298

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
            NT E + I     I+ D  ++            ++ S  TP+ +F              
Sbjct: 299 ENTQEKQFIYKSHLINTDEKLR------------ELLSTFTPEDIF-------------- 332

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
                  +T+     V+  + +G   F    + +D+++   + IA + L  ++  S++  
Sbjct: 333 -----SFDTETTSLEVRSAKIVG---FSFSVNGVDSYY---VPIAHNYLGVEEQVSYEC- 380

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMR 484
                                KE + Y+   F  ++   IGHN+KYD  +L   +   ++
Sbjct: 381 --------------------AKEFIEYI---FGCKYV--IGHNLKYDLEILKTNFDFVLQ 415

Query: 485 GF---EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
            F    D ML++++L S  +  ++  + +K+ ++     K+I+  +++     +I     
Sbjct: 416 DFSKIRDSMLLAWLLQSD-ALCNLDFLMKKYFNHEMIHYKDIVHKKEN---FSQILIQYA 471

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            E+A E++    QL+  L+  L+ E+L+ + + ++ P I  +  ME+ GI+ID +  +++
Sbjct: 472 CEYASEDAAACYQLYFKLKG-LVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQEL 530

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E  + L  + E I+ L+ ++FNL+SP+QL  ILF +L   +G KTK+G + T+   L 
Sbjct: 531 ILESRERLHQISEEIFALANKRFNLNSPQQLATILFEELNLQAGKKTKSG-FSTSESVLN 589

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLE 717
            +    +PII  ILE+R+  K+ STY + L  H     Q R++T +    T TGRL+S  
Sbjct: 590 SL-YDTHPIIPKILEYREFFKLYSTYIEPLSEHAKADLQHRIYTSFMQTGTSTGRLSSKN 648

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP+KT  G++IRR FI+     L+S DYSQIELR+LAH ++   + + F    DI
Sbjct: 649 PNLQNIPVKTAQGRRIRRGFIAKENHLLVSLDYSQIELRLLAHFSEDEAMIEAFLKDADI 708

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A +IFG   E ++ + R  AK+INF +IYG+ P +L+  L+I   EA  YI+ YF 
Sbjct: 709 HLETAKKIFG---EDMAQEKRAIAKSINFGLIYGMGPKKLSETLKITFQEAKTYIQNYFT 765

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FP + E+++  + F+ +NGY +T+ GR   +D     +   +    R  INA  QGSAA
Sbjct: 766 SFPTVKEFLKNQEEFILENGYSKTLLGRMRKFD-FEGVQEYQKAAFLREGINAIFQGSAA 824

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM ++ K+     L +K+LLQ+HDEL+FE P+E     S+ I   ME        
Sbjct: 825 DIIKMAMNAITKA----NLESKLLLQVHDELIFEAPKEIAKKESEEIAKIMENIT----T 876

Query: 958 LRVPLKVNIKVSNNWQE 974
           L+VPLK  I +  NW E
Sbjct: 877 LKVPLKCTISIGENWGE 893


>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
          Length = 923

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 361/613 (58%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +        W+ K+      +F   T ++D   ++ + ++ S ++        V  
Sbjct: 325 NYDTVQTWAQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFS-VEPGHAAYVPVAH 383

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              DL     +D         E+L+ LK + E+    K+G ++KYD  VL  +GI++ G 
Sbjct: 384 RGPDLPAQLPRD---------EVLAKLKPWLEDASRKKLGQHLKYDAQVLVNHGIALNGI 434

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++   +  E+A
Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLDKASEYA 493

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S+E
Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSE 553

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 554 IATRLVELEQEAYVLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AFI+ P  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 673 NIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 793 VARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE    A +M++Q+HDELV EVPE E++   + +   M         L+VP
Sbjct: 853 LSMIAVDDWLERGGFAARMIMQVHDELVLEVPENELSVVREKLPEMMCGVA----KLKVP 908

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 909 LVAEVGVGENWEE 921



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y +YKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYAEYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE +V   +L 
Sbjct: 127 EAERRGMKVIVSTGDKDLAQLVTGHVTLINTMTNEALDRDGVLAKFGVPPELIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYGTLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
          Length = 923

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 361/613 (58%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +        W+ K+      +F   T ++D   ++ + ++ S ++        V  
Sbjct: 325 NYDTVQTWAQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFS-VEPGHAAYVPVAH 383

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              DL     +D         E+L+ LK + E+    K+G ++KYD  VL  +GI++ G 
Sbjct: 384 RGPDLPAQLPRD---------EVLAKLKPWLEDASRKKLGQHLKYDAQVLVNHGIALNGI 434

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +++       I  D++   +  E+A
Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLDKASEYA 493

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S+E
Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSE 553

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++ 
Sbjct: 554 IATRLVELEQEAYVLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AFI+ P  K++SADYSQIELRI+AHI++   L + F +  DIHR  
Sbjct: 673 NIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 793 VARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE    A +M++Q+HDELV EVPE E++   + +   M         L+VP
Sbjct: 853 LSMIAVDDWLERGGFAARMIMQVHDELVLEVPENELSVVREKLPEMMCGVA----KLKVP 908

Query: 962 LKVNIKVSNNWQE 974
           L   + V  NW+E
Sbjct: 909 LVAEVGVGENWEE 921



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y +YKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I T   
Sbjct: 67  AKGKTFRDDLYAEYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE +V   +L 
Sbjct: 127 EAERRGMKVIVSTGDKDLAQLVTGHVTLINTMTNEALDRDGVLAKFGVPPELIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG L+ ++ +A  IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYGTLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 985

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 327/1029 (31%), Positives = 525/1029 (51%), Gaps = 116/1029 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R+FYA         +  +G P +   GF   L  LL N +  S      
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLQTKEGTPTSVTYGF---LKSLLDNCKLLS-PEGVT 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDII 121
           + FD    TFR++  P+YKANR   P++    L  L ++  ++  +P     G+EADD++
Sbjct: 66  IAFDTAEPTFRHKADPNYKANRDVAPDIFFQDLAQLQKILEESLNLPIFTAPGYEADDVL 125

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIKK 171
            T    A   G+ V I++ D+DL QLV        LY        +     I+   V  K
Sbjct: 126 GTLANKASDNGWQVRILTGDRDLFQLVDDDRNIAVLYMGGGPYAKSGSPAFINEAGVKTK 185

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI--LINASRIKQKKR 229
            G+ P K++ L+ALTGDS DNIPGI G+G KTA  LL+E G+L+ I  +++    K +K 
Sbjct: 186 LGVIPTKVIDLKALTGDSSDNIPGIRGVGPKTAINLLKENGDLDGIFKILDYLETKGEKA 245

Query: 230 RENILEYA---------ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
            + +++ A         E A LSR+L  +  +VPI   L +L L   N   L + L+ LE
Sbjct: 246 TQGVIKGALKEKLKTGKENAYLSRQLAEIMINVPIK-ELSNLELTKINQESLKNSLEGLE 304

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
              LIN++                +   + +KG              T+Q S  S     
Sbjct: 305 LFSLINQLP---------------NFTASFSKG-----------GFNTNQRSISSTDKKS 338

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKL----ETIGSASFKII 395
            N + TP     E+++     P       +I+ T+  ++  V KL    E +   +    
Sbjct: 339 NNKKNTPD----EKIEDSGTQP--PAIKPQIIETESQLKSLVNKLSRCNEPLQPVAIDTE 392

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-----IL 450
           T +++ F ++ + +     +  DD ++      I L  H SQ      ++ ++     ++
Sbjct: 393 TTSLNPFKAELVGLGFCWGENLDDIAY------IPLG-HNSQGELKDQSIRQQLPIQNVI 445

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
             L  +  + +  K+  N KYD+L+    GI + G     L++  L +  + H +  IA+
Sbjct: 446 QSLTPWLSSSYHPKVLQNAKYDRLIFLHNGIPLEGVVMDTLLADYLSNSTNKHSLDEIAK 505

Query: 511 KWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE--KL 565
           +   +T    KE++   ++   +D I  + +  +   +  +  +L   +R +L  +  +L
Sbjct: 506 REYGFTPINFKELVGKGETFKDVD-IDTASI--YCGMDVYLTRKLSFRIRSQLQTKGSEL 562

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
           + + E++++P+  ++++ME  GI ID   LK++S E+++ L  LEE  Y  +G +FNL+S
Sbjct: 563 IQLLEKVEQPLEPILAEMEARGICIDIPYLKELSKELNQTLKGLEEQAYKSAGFEFNLNS 622

Query: 626 PKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           PKQLG+ILF KL        KTKTG W T A  LE++   D+P++  ++E R LSK+ ST
Sbjct: 623 PKQLGEILFDKLALDKKKSRKTKTG-WSTDANVLERLEA-DHPLVPLLVEHRTLSKLVST 680

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+     
Sbjct: 681 YVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENW 740

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           KLISADYSQIELRILAH++    L + ++N  D+H + A  +  +  E ++   RR  KT
Sbjct: 741 KLISADYSQIELRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKT 798

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           INF +IYG+   R A    + +SEA D++ R+  R+P +  ++E  +      GYV+T+ 
Sbjct: 799 INFGVIYGMGAQRFARSTGLNQSEAKDFLNRFKERYPKVFSFLELQERLALSKGYVQTLL 858

Query: 864 GRRIHY-------------DEIN-----SPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           GRR ++             D +N     + ++ +     RAA NAPIQGS+ADI + AM+
Sbjct: 859 GRRRYFNFDKNGLGRLLGSDPMNIDLKRARRAGMEAQQLRAAANAPIQGSSADIIKIAMV 918

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            +   L+   +A  +LLQ+HDELV EV    I     I+V +ME A    ++L VPL V+
Sbjct: 919 QLATKLKVSGVAANLLLQVHDELVLEVEPSVIEEVKNIVVSTMENA----VHLAVPLVVH 974

Query: 966 IKVSNNWQE 974
             + +NW +
Sbjct: 975 ASIGDNWMD 983


>gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
 gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
          Length = 976

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 318/1033 (30%), Positives = 521/1033 (50%), Gaps = 136/1033 (13%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K DG P +   GF   L    +N   E +    
Sbjct: 13  LLLVDGHSLAFRSFYAFSKGIDGGLTTK-DGFPTSVTYGFLKSLLDNCKNICPEGVC--- 68

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEADDI 120
            + FD    TFR+E+ P+YKANR   P++    +  + +   ++  +P  +  G+EADD+
Sbjct: 69  -ITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYEADDL 127

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHVIK 170
           + T    A  +G+ V I+S D+DL QLV     +Y           +     ++   V +
Sbjct: 128 LGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGVKE 187

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I     +I+Q   +
Sbjct: 188 KLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALEKIQQNNDK 247

Query: 231 -----------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
                      E +      A LSR L  + T+VP+ +  +   L++ N   L   L+ L
Sbjct: 248 KYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-DGYELKNINQELLSESLQKL 306

Query: 280 EFTKLINRV---ATTYDCDAANIE---------PVVLDINTTENKGIAIETEIDRDTTIK 327
           E + L+ ++    +T+                 P +L  N  EN     E +I +   I 
Sbjct: 307 ELSTLLRQIDIFNSTFSKGGFGKNNLVSKEEKVPKILSNNELENS----ENKIPKIKVII 362

Query: 328 TSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387
            + F  L                 ++RL K +Q                           
Sbjct: 363 VNDFELLDK--------------LIKRLNKTNQI-------------------------- 382

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              S    T++++   ++ + I +   ++ DD        +I L  H  +  T      +
Sbjct: 383 --VSLDTETNSLNPIDAELVGIGLCLGEENDDL------FYIPLG-HQIKKETPNQLSIE 433

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           ++ S L+ + E+    K   N K+D+ +   +G+ ++G   D +L  Y+L++ +  H ++
Sbjct: 434 DVFSKLRTWIEDPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLNN-QEKHGLS 492

Query: 507 SIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            I+ +   +   + KE +   K    +D I+++ +  +   +  +  ++  + + +   E
Sbjct: 493 EISFRLFGFKPPSFKETVGKNKDFSFVD-INEASI--YCGYDVFLTFKIVKIFKERFSKE 549

Query: 564 K--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
           K  L+ +++ ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +++L+ E F
Sbjct: 550 KDELIKLFKEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIENKVFELADENF 609

Query: 622 NLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           NLSSPKQLG+ILF KL        KTKTG W T A  LE++   ++ II+++++ R +SK
Sbjct: 610 NLSSPKQLGEILFEKLNLDKKKSRKTKTG-WSTDALVLERL-VDEHEIIQHLIKHRTISK 667

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           + STY D+LPN IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+ 
Sbjct: 668 LLSTYIDALPNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLP 727

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
               KL+SADYSQIELRILAH+A    L   F  + DIH + A  IF    E++S   RR
Sbjct: 728 EKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERR 785

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
             KTINF +IYG+   + A    +   EA +++ +Y  R+  I +++E  +      GYV
Sbjct: 786 VGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYV 845

Query: 860 ETIFGRRIHY------------------DEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +TIFGR+  +                  D  ++ ++ +   + RAA NAPIQGS+ADI +
Sbjct: 846 KTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIK 905

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AM+ ++K   +     KMLLQ+HDEL+FEV  + +   ++++  +ME      + L VP
Sbjct: 906 IAMVQLNKKFIEMNFPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMENC----VKLNVP 961

Query: 962 LKVNIKVSNNWQE 974
           L V+I + +NW E
Sbjct: 962 LLVDIGIGDNWME 974


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/611 (40%), Positives = 352/611 (57%), Gaps = 21/611 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I +  ++ +W+ ++   G  +    T  ++  H+K + I+++T   +          
Sbjct: 297 YVTIDSEAELDRWIAEIRHAGRFAIDTETTGLNPRHAKLVGISVATAPGR--------AA 348

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGF 486
           +I L         G        L  L     +   LKI HN K+D  VL R G++     
Sbjct: 349 YIPLG-----HEDGPQLPRPLALERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPV 403

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543
           +D MLMSY L +GR  H +  ++   L +   +  E+  + +S +    +   +   +A 
Sbjct: 404 DDTMLMSYTLGAGRHGHGMDELSALHLDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAA 463

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           E+++V L+LWLLLRP+L  E  L +YE +++ ++ V+  ME  GI +D+  L+ +SAE +
Sbjct: 464 EDADVTLRLWLLLRPRLRTEAALALYETMERRLLSVLLGMERAGIMVDRADLESMSAEFA 523

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + +  ++  I  L+G  FN  SPKQLG+ILF ++  P G +TKTG W T A  LE++   
Sbjct: 524 RRMDDIQREIEKLAGRAFNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAAS 583

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            + +   +LEWRQL K+KSTYAD+L   I+   QRVHT +S A T TGRL+S EPNLQNI
Sbjct: 584 GHDLPVRVLEWRQLQKLKSTYADALVGEIDIADQRVHTSFSQAITTTGRLSSNEPNLQNI 643

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI+T  G +IRRAFI+ P K LISADYSQIELR+LAH+A I  L + F    DIH   AA
Sbjct: 644 PIRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAA 703

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           E+FG+ +E + P +RR AK INF IIYGIS F LA QL I  SEA  +I  YF R+P I 
Sbjct: 704 EVFGLPMEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIR 763

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y+ +T  F R +GYV T FGRR +   I     + R   ER AINAP+QG AADI +RA
Sbjct: 764 RYMNETAEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRA 823

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ +  ++ D  L   MLLQ+HDELVFE P+++    +++    M+ A     +L VPL 
Sbjct: 824 MVRLPAAIRDAGLDAVMLLQVHDELVFEAPKDQAEATAKLACAVMQGAA----SLSVPLL 879

Query: 964 VNIKVSNNWQE 974
           V   +  NW +
Sbjct: 880 VETGIGANWSD 890



 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 132/263 (50%), Positives = 176/263 (66%), Gaps = 6/263 (2%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
           + DG PVNA+ GFCNML +LL    KE   +H AVIFD    TFRNEI P YKA+RP+ P
Sbjct: 3   RDDGTPVNAVFGFCNMLARLL----KEHTGTHLAVIFDAGRTTFRNEIDPRYKAHRPEPP 58

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148
           E L+PQ  LVR AT+AF +PAIE+ G EADD+IA+Y    +K G    IIS+DKDLMQL+
Sbjct: 59  EELVPQFALVREATRAFAVPAIELDGVEADDLIASYAEEMKKAGGEAVIISSDKDLMQLL 118

Query: 149 SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
                + D +K   I  + V+ K+G+ PE+MV  QAL GDS+DN+PG+PGIG K AA L+
Sbjct: 119 DAHVSMLDPIKSTPIGPDEVVAKYGVTPEQMVDAQALMGDSVDNVPGVPGIGPKGAAQLI 178

Query: 209 QEYGNLENILINASR--IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            E+G+LE+IL  A+   +K  KRRE+++ YAE AR+SR+LV LR DVP+ +P++ L +  
Sbjct: 179 AEFGDLESILAAAASGTMKPSKRRESLVAYAEEARISRRLVELRRDVPLPVPIDELAIAP 238

Query: 267 CNGPRLISFLKALEFTKLINRVA 289
            +   L  FL A  F  +  R+ 
Sbjct: 239 LHDGMLNDFLDAQGFKSIKARLG 261


>gi|315122836|ref|YP_004063325.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496238|gb|ADR52837.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 233

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/228 (89%), Positives = 217/228 (95%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQKE HLFLVDGSSFIYRAFYATP LSRK DGLPVNAIAGFCNMLWKLLQNSR E+IASH
Sbjct: 1   MQKEKHLFLVDGSSFIYRAFYATPALSRKRDGLPVNAIAGFCNMLWKLLQNSRSENIASH 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F+VIFDYP  TFRNEIYPDYKANRP+IPEMLLPQLPLVRLATQAFGIP+IEIQGFEADDI
Sbjct: 61  FSVIFDYPDKTFRNEIYPDYKANRPQIPEMLLPQLPLVRLATQAFGIPSIEIQGFEADDI 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IATY  IAEK GF+VTI+STDKDLMQLVSPTTCLYD++KEEKIDIE+VIKKWG+PPEKMV
Sbjct: 121 IATYASIAEKRGFSVTIVSTDKDLMQLVSPTTCLYDSIKEEKIDIENVIKKWGVPPEKMV 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           CLQAL+GDSIDNIPGIPGIGYKTAA LLQEYGNL+NIL NA++IKQKK
Sbjct: 181 CLQALSGDSIDNIPGIPGIGYKTAASLLQEYGNLDNILNNANQIKQKK 228


>gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH]
 gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH]
          Length = 905

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 328/984 (33%), Positives = 521/984 (52%), Gaps = 101/984 (10%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++L+D  + I+R ++A    PL + K  G  VNA  GF   L+ ++    KE    +  V
Sbjct: 4   IYLIDALNIIFRNYHAMKNNPLTNSK--GENVNAFIGFFKTLFFII----KEKNPENLIV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E QG+EADD+IA+
Sbjct: 58  AFDSETQTFRQQKYPSYKATRDAPPDNLIPQIHWIKEGLLKANIPFFERQGYEADDLIAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVC 181
           +   AE+  +   IIS DKDL+QL+S  T +         K+D ++V++K+G+   ++  
Sbjct: 118 FAKKAERNNYLTYIISPDKDLLQLMSDQTKILKIENSSFVKMDNDYVMQKFGVNTSQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             ++ GD  DNIPGI GIG K A  LL E+  L+ I  N   I  +  +E +L   + A 
Sbjct: 178 YLSIVGDRSDNIPGIKGIGGKGAVKLLNEFQTLKGIYENIDSINNR-YKEILLREIKNAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS +L+ L  D+ +   LE   LE+     ++S  +    T LI                
Sbjct: 237 LSYELISLVEDLELP-ALEEFKLENLK-EDVLSLFEEYSATTLIKSY------------- 281

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                     K I  +  +       T+Q       TS +N+ +T Q+            
Sbjct: 282 ----------KAILKKRHV-------TNQTQGTLQTTSYLNTLKTIQE------------ 312

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              N  Y  I+  + +   ++KL+     S    T + + + ++ + I++S         
Sbjct: 313 --ENIKYETILTKEQLDLLIEKLKKTSYVSIDTETTSTNVYEAQILGISVS--------- 361

Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           FK  E+ +I +      ++  K ++ +E I     +FF+ +  L IG N K+D  +  R+
Sbjct: 362 FKEFESYYIPI------ETKEKKSIEREYITQKFNEFFKTKPKL-IGQNYKFDYKIFTRH 414

Query: 480 GI-SMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR---KEILKSRKS--SIPIDK 532
           G  ++  + D M+ +YV+D + + S D   +++K+L +     +EI+    +   IP++ 
Sbjct: 415 GFNAIPPYFDTMIAAYVIDPNTKVSLDF--LSEKYLMHKNIKYQEIVSQNGTLKDIPLET 472

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +S+     +A E++++  +L+ +   KL  + L  +   ++ P  +V+++ME  GI +D+
Sbjct: 473 VSN-----YAAEDADITFRLFKIFAKKLKEDNLESLMIDVEMPFSNVITEMEENGIYLDK 527

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQW 650
           D L+Q S E++K L  +E  I    G KFNL+S KQL  +LF +LK   P   K  +   
Sbjct: 528 DYLRQYSQELTKELKLIENEIIQSIGIKFNLNSSKQLYRVLFDELKLVLPPNVKKHS--- 584

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T+ + LE I      I K I+++R++SK+K+TY D+L   IN +T ++HT +  A   T
Sbjct: 585 -TSIKVLEAIKDQHESIPK-IIQYRKISKLKNTYTDNLIKFINAKTNKIHTNFIQAKAAT 642

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR+ S  PNLQNIPIK + G+KIR AF        ISADYSQIEL ILAH ++   L + 
Sbjct: 643 GRILSTAPNLQNIPIKDEKGRKIREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEA 702

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  DIH   A+++F V+ +KV+P MRR AK+INF IIY +S   L+ +L I R EA  
Sbjct: 703 FKNKEDIHIKTASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSAHGLSQELSIKREEAQK 762

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I  YF+ +  I  +I+   +F R+NGY ET+  RR +  EINS   S R+  ER AIN+
Sbjct: 763 FIDSYFNLYSKIKIFIQNRIDFARKNGYSETLLKRRRYIKEINSQNHSERSGAERIAINS 822

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQGSA+DI + AM+ V+   +   L +K+LLQ+HDE++ E P++E   A  II   ME 
Sbjct: 823 TIQGSASDIMKIAMVRVYNEFKSKNLKSKILLQVHDEILIESPKQECEEAKTIIKEMMEN 882

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A  P   L++PL++NI+   +W E
Sbjct: 883 AY-P---LKLPLRINIETGKSWGE 902


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 318/1021 (31%), Positives = 514/1021 (50%), Gaps = 114/1021 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             LVDG S  +R+++A         R   G+P +   GF   L +++   + ++IA    
Sbjct: 21  FILVDGHSLAFRSYFAFAKGKNGGLRTKAGIPTSVCFGFIKCLLEVITTQKPQAIA---- 76

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR+E    YKA+R + PE  +P L  +    +   +P     G+EADD++ 
Sbjct: 77  VAFDLGLPTFRHEADDTYKADRLETPEDFIPDLENLNELLRGLNLPIFTAPGYEADDVLG 136

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLV-----------SPTTCLYDTVKEEKIDIEHVIKK 171
           T +  A   G+ V I+S D+DL QL+           SP           +   E V +K
Sbjct: 137 TLSQKASAAGYRVKILSGDRDLFQLIDGDKGITVLNFSPEALKRYANSITEFQAEQVKEK 196

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P ++V  +AL GD  DNIPG+ GIG KTA  LL  Y +L+ I      I     +E
Sbjct: 197 LGVLPTQIVDFKALCGDKSDNIPGVRGIGEKTAVKLLNTYNSLDGIYAKLDEIT-GSTQE 255

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            ++   E A  SR L  +  DVP+ + LE   L   +  +LI  L+ LEF K +++    
Sbjct: 256 KLIAGKEDASHSRYLAQIVVDVPLEVNLEDCQLTGFDTNQLIPILEKLEFNKFLDQ---- 311

Query: 292 YDCDAANIEPVVLDINTTENK--GIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQTPQ 348
                         IN  + K  G  +ET+ +  +TT +       S + +  N+E+ P 
Sbjct: 312 --------------INELQQKLGGQVLETKAEEINTTQEDDDLWFFSGEDTA-NTEKRP- 355

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT----MDAFH 403
                          ++    +I+NT+D +Q+ V  L+   +    +  DT    ++   
Sbjct: 356 ---------------DSSIQIRIINTEDKLQELVAILQKCTNLEKPVAWDTETTALEPRD 400

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           +  + I        D      E  +I +         G N     ++S L+   EN ++ 
Sbjct: 401 AALVGIGCCWGTGSD------EAAYIPVG-----HKIGHNLQLDLVVSALRPILENANYP 449

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--- 519
           K   N K+D+L+    GI++ G   D ML SY+++   ++H+++ ++ + L     E   
Sbjct: 450 KTFQNAKFDRLIFKCQGINLVGVVFDTMLASYLINPD-TTHNLSDLSLRNLGLQLTEYND 508

Query: 520 -ILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKP 575
            + K+ K  +   I  I    V  +         QL   LR +L     L  +   +++P
Sbjct: 509 IVTKTGKKELQKNIADIGIDIVAYYCGTQVYATFQLVDKLRCELNKTPDLAKLLVEVEQP 568

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  V+++ME TG++I+   L+++S ++   L  LE    +++ EKFNL SPKQL  ILF 
Sbjct: 569 LEAVLAEMEYTGVRINSSYLQELSQQLESELAKLEIQATEIASEKFNLDSPKQLSYILFD 628

Query: 636 KLKFPS--GAKTKTGQWKTTAQDLEQINCGDNP-IIKNILEWRQLSKIKSTYADSLPNHI 692
           KL   +    K +TG + T A  LE++   DN   +  I+E+R  SK+KSTY D+LP  +
Sbjct: 629 KLGLSTKYSRKIQTG-YSTDAATLEKLQEVDNTGFVDAIIEYRTSSKLKSTYVDALPALV 687

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           + ++QR+HT ++  +T TGRL+S  PNLQNIPI+T   ++IR+AF+      +++ADYSQ
Sbjct: 688 HPQSQRLHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMVAADYSQ 747

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRILAH+++   L Q ++ + DIH + A  +F    ++V+ + RR AKTINF +IYG+
Sbjct: 748 IELRILAHLSQEPVLVQAYKQNEDIHTVTAKLVF--EKDEVTSEERRFAKTINFGVIYGM 805

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
              + A    + ++ A ++I+R+  R+P +  Y+EK K      GYVETI GRR ++D  
Sbjct: 806 GSLKFARSTGVDKANANEFIRRFNERYPQVFAYLEKVKKEAISQGYVETILGRRRYFDFT 865

Query: 873 NSPKSSIRNIN-------------------ERAAINAPIQGSAADITRRAMISVHKSLED 913
           +     ++ I+                    R+A NAPIQGS+ADI + AM+ +H+ L +
Sbjct: 866 SKSLKELKGISLEDIDLSRLKNLGAYNAGLLRSAANAPIQGSSADIIKIAMVQLHEVLRN 925

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           ++   ++LLQ+HDELVFEVP +E       I   ME A    ++L VPL V+++  +NW 
Sbjct: 926 YQ--ARLLLQVHDELVFEVPPQEWGELQLQIKSVMENA----MSLSVPLVVDVRAGDNWM 979

Query: 974 E 974
           E
Sbjct: 980 E 980


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/613 (39%), Positives = 353/613 (57%), Gaps = 21/613 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I +  ++ +W+ ++   G  +    T  ++  H+K + I+++T   +          
Sbjct: 320 YVTIDSEAELDRWIAEIRHAGRFAIDTETTGLNPRHAKLVGISVATAPGR--------AA 371

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGF 486
           ++ L         G        L  L     +   LKI HN K+D  VL R G++     
Sbjct: 372 YVPLG-----HEDGPQLPRPLALERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPV 426

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543
           +D MLMSY L +GR  H +  ++   L +   +  E+  + +S +    +   +   +A 
Sbjct: 427 DDTMLMSYTLGAGRHGHGMDELSALHLDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAA 486

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           E+++V L+LWLLLRP+L  E  L +YE +++ ++ V+  ME  GI +D+  L+ +SAE +
Sbjct: 487 EDADVTLRLWLLLRPRLRTEAALALYETMERRLLSVLLGMERAGIMVDRADLESMSAEFA 546

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + +  ++  I  L+G  FN  SPKQLG+ILF ++  P G +TKTG W T A  LE++   
Sbjct: 547 RRMDDIQREIEKLAGRAFNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAAS 606

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            + +   +LEWRQL K+KSTYAD+L   I+   QRVHT +S A T TGRL+S EPNLQNI
Sbjct: 607 GHDLPVRVLEWRQLQKLKSTYADALVGEIDIADQRVHTSFSQAITTTGRLSSNEPNLQNI 666

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI+T  G +IRRAFI+ P K LISADYSQIELR+LAH+A I  L + F    DIH   AA
Sbjct: 667 PIRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAA 726

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           E+FG+ +E + P +RR AK INF IIYGIS F LA QL I  SEA  +I  YF R+P I 
Sbjct: 727 EVFGLPMEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIR 786

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y+ +T  F R +GYV T FGRR +   I     + R   ER AINAP+QG AADI +RA
Sbjct: 787 RYMNETAEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRA 846

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ +  ++ D  L   MLLQ+HDELVFE P+++    +++    M+ A     +L VPL 
Sbjct: 847 MVRLPAAIRDAGLDAVMLLQVHDELVFEAPKDQAEATAKLACAVMQGAA----SLSVPLL 902

Query: 964 VNIKVSNNWQEEN 976
           V   +  NW + +
Sbjct: 903 VETGIGANWSDAH 915



 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/285 (51%), Positives = 193/285 (67%), Gaps = 7/285 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGS FI+RAF+A P ++R  DG PVNA+ GFCNML +LL    KE   +H AVIFD
Sbjct: 5   LVLVDGSGFIFRAFHALPPMTRD-DGTPVNAVFGFCNMLARLL----KEHTGTHLAVIFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRNEI P YKA+RP+ PE L+PQ  LVR AT+AF +PAIE+ G EADD+IA+Y  
Sbjct: 60  AGRTTFRNEIDPRYKAHRPEPPEELVPQFVLVREATRAFAVPAIELDGVEADDLIASYAE 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +K G    IIS+DKDLMQL+     + D +K   I  + V+ K+G+ PE+MV  QAL 
Sbjct: 120 EMKKAGGEAVIISSDKDLMQLLDAHVSMLDPIKSTPIGPDEVVAKYGVTPEQMVDAQALM 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR--IKQKKRRENILEYAETARLSR 244
           GDS+DN+PG+PGIG K AA L+ E+G+LE+IL  A+   +K  KRRE+++ YAE AR+SR
Sbjct: 180 GDSVDNVPGVPGIGPKGAAQLIAEFGDLESILAAAASGTMKPSKRRESLVAYAEEARISR 239

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +LV LR DVP+ +P++ L +   +   L  FL A  F  +  R+ 
Sbjct: 240 RLVELRRDVPLPVPIDELAIAPLHDGMLNDFLDAQGFKSIKARLG 284


>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
 gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
          Length = 913

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/612 (40%), Positives = 362/612 (59%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +        W+Q++E     SF   T ++D   ++ + ++ + ++        V   
Sbjct: 316 YETVQTWHQFDAWLQRVEAAELTSFDTETTSLDPMTAQIVGLSFA-VEAGHAAYVPVAHR 374

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
             D  V   +D         E+L+ LK + E+    K+G ++KYD+ VL  YGI MRG E
Sbjct: 375 GPDAPVQLPRD---------EVLAKLKPWLESAKHKKVGQHLKYDEQVLANYGIEMRGIE 425

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R  HD+ ++A + L       +++       I  D+++  +  E+A 
Sbjct: 426 HDTLLQSYVLESHRP-HDMDNLALRHLGVKTIKYEDVAGKGAQQIGFDEVALDKAAEYAA 484

Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ L+L   L P+L  EK L HVY  ++ P   V+ +ME TG+ ID + L+  S+EI
Sbjct: 485 EDADITLRLHQTLYPQLAAEKTLEHVYRDIEVPTSRVLRKMERTGVLIDAEKLRLQSSEI 544

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++  
Sbjct: 545 AARLIELESEAYVLAGGEFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKL-A 603

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 604 EDYPLPKILLEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAVTGRLASNDPNLQN 663

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 664 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATA 723

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AEIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 724 AEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGV 783

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 784 ARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 843

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V K +E+  + T+M++Q+HDEL+ EVP+EE+    + +   M         L+VPL
Sbjct: 844 SMIAVQKWIEESNIGTRMIMQVHDELILEVPDEELPEVRKRLPELMCGVA----ALKVPL 899

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 900 VAEVGAGLNWEE 911



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/250 (42%), Positives = 152/250 (60%), Gaps = 6/250 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YPDYKANRP +P+ L  Q+  + +A +A G P + I G EADD+I T + 
Sbjct: 67  AKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLST 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK G  V + + DKDL QLVS    L +T+  EK+D   V+ K+G+PPE++V   +L 
Sbjct: 127 EAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ I+ +A  IK     +N+    +   ++RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTALKWLTQYESLDGIVAHAGEIKGAV-GDNLRRALDFLPMARKL 245

Query: 247 VMLRTDVPIT 256
           V +     +T
Sbjct: 246 VTVERHCDLT 255


>gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92]
 gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92]
          Length = 922

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/614 (39%), Positives = 365/614 (59%), Gaps = 24/614 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +++   + QW++KL T    +F   T +++   ++ + +           SF +E  
Sbjct: 324 YDTVLDEATLDQWLEKLSTAELFAFDTETTSLNYMEAELVGV-----------SFAIEPG 372

Query: 428 FIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                V  + D  G    +T+E +L  +K   E+    K+G ++KYD  VL RYGI + G
Sbjct: 373 KA-AYVPVAHDYMGAPEQITRETLLEKMKPLLESSDHKKVGQHLKYDMNVLARYGIELTG 431

Query: 486 FE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEH 541
            E D ML SYVL+S  + HD+ S+A ++L       ++I    K  +  ++I   Q   +
Sbjct: 432 IEFDTMLESYVLNSTATRHDMDSLADRYLGLKTIKFEDIAGKGKKQLTFNQIELEQAAPY 491

Query: 542 AIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ L+L   +  +L   E L  V+  +++P+I V+S +E  G  +D  +L + S 
Sbjct: 492 AAEDADITLRLHQAINAQLSKDETLTSVFNDIERPLIPVLSHIERNGALVDASMLGEQSI 551

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+++ ++ LE   YD++G++FNL+SPKQL  ILF +L  P   KT  G   T  + L+++
Sbjct: 552 ELAERMVELERQAYDIAGKEFNLASPKQLQQILFEELSIPVIKKTPKGAPSTAEEVLQEL 611

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K ILE R LSK+KSTY D LP  IN  T R+HT Y  A T TGRL+S +PNL
Sbjct: 612 AL-DYPLPKLILEHRSLSKLKSTYTDKLPLMINPGTGRIHTSYHQAVTATGRLSSTDPNL 670

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T  G++IR AFI+P   K+++ADYSQIELRI+AH+++   L   F    DIHR 
Sbjct: 671 QNIPVRTQEGRRIRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQGLLDAFSKGADIHRA 730

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+F V +++VS   RR AK INF +IYG+S F LA QL I R +AA YI+ YF  +P
Sbjct: 731 TAAEVFKVELDQVSDDQRRSAKAINFGLIYGMSAFGLAKQLGIARKDAAQYIEHYFETYP 790

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y++  +   ++ GYVET+FGRR++  EI +  +  R   ER AINAP+QG+AADI 
Sbjct: 791 GVQHYMDDIRAKAQEQGYVETLFGRRLYLPEIKARNAMRRQAAERTAINAPMQGTAADII 850

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +RAM++V K L +     +M++Q+HDELVFEV + ++ +  + +   M  A     +L V
Sbjct: 851 KRAMVTVDKWLAESDFDVRMIMQVHDELVFEVRDTQVDSFVEAVKDKMATAA----DLDV 906

Query: 961 PLKVNIKVSNNWQE 974
           PL V   V  NW++
Sbjct: 907 PLLVEAGVGENWEQ 920



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 148/264 (56%), Gaps = 11/264 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDGSS++YRAF+A+     R   G+P  AI    +M+  L+    K+   S  AVIF
Sbjct: 12  LILVDGSSYLYRAFFASQQADLRNSAGIPTGAIRVVTSMMKSLI----KQYPESPVAVIF 67

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+EI+ +YKA RP +P+ L  Q+  +    +A G P I  +G EADD+I T  
Sbjct: 68  DAKGKTFRDEIFSEYKAQRPPMPDDLRSQVEPIHKIIKAMGFPLIVEEGVEADDVIGTMA 127

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A  +G A  I + DKD+ QLV     L +T+ +  +D+E V  K+GIPPE ++   AL
Sbjct: 128 REASAKGIATLISTGDKDMAQLVDQHVTLINTMTDTVMDVEGVKDKFGIPPELIIDFLAL 187

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAET 239
            GD +DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K   + + +  E 
Sbjct: 188 MGDKVDNIPGVPGVGEKTALALLQGIGGLKDLYANLDKIADLGFRGSKSMAKKLEDNREA 247

Query: 240 ARLSRKLVMLRTDVPITIPLEHLI 263
           A LS  L  ++TDV +   +E  +
Sbjct: 248 ADLSYLLATIKTDVELQESVEDFV 271


>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
 gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
          Length = 913

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/612 (40%), Positives = 366/612 (59%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   +    W++K+ T    SF   T ++D   ++ + +++S    +          
Sbjct: 316 YDTVQTWEQFDGWLEKINTAELTSFDTETTSLDPMTAQIVGLSLSVEAGR--------AA 367

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ L+ H   D+        E+L+ LK + E+    K+G ++KYD+ VL  YGI MRG E
Sbjct: 368 YVPLA-HRGPDAP-VQLPRDEVLARLKPWLESAEHKKVGQHLKYDEQVLANYGIEMRGIE 425

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYV++S R+ HD+ S+A + L       +E+       I  D+++  +  E+A 
Sbjct: 426 HDTLLQSYVVESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAA 484

Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ L+L   L P++  EK L +VY  ++ P   V+ +ME TG+ ID + L+  S+EI
Sbjct: 485 EDADITLRLHQALYPQVTAEKTLEYVYRAIELPTSRVLRKMERTGVLIDAEKLRLQSSEI 544

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 545 ATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKL-A 603

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 604 EDYPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQN 663

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 664 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATA 723

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AEIF V   +VS   RR AK INF +IYG+S F LA  L I R  A  YI RYF R+PG+
Sbjct: 724 AEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLAANLGITRDAAKLYIDRYFARYPGV 783

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 784 ARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 843

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   +E+ K+ T+M++Q+HDEL+ EVP+ E++   + +   M        +L+VPL
Sbjct: 844 SMIAVQNWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVA----DLKVPL 899

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 900 VAEVGAGLNWEE 911



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/250 (40%), Positives = 152/250 (60%), Gaps = 6/250 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RSPDGNPTGALYGMINMLRRM----RKEVTAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YPDYKANRP +P+ L  Q+  + +A +A G P + I G EADD+I T + 
Sbjct: 67  AKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLST 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK G  V + + DKDL QLVS    L +T+  E +D   V+ K+G+PPE++V   +L 
Sbjct: 127 QAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNETLDRAGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L ++ +L+ I+ +A  IK     +N+    +   +++KL
Sbjct: 187 GDTVDNVPGVEKCGPKTAIKWLTQFDSLDGIVAHADEIKGAV-GDNLRRALDFLPMAKKL 245

Query: 247 VMLRTDVPIT 256
           V +  +  +T
Sbjct: 246 VTVERNCDMT 255


>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
 gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
          Length = 906

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/611 (38%), Positives = 359/611 (58%), Gaps = 21/611 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +++      W+ K+E     +    T ++D+F ++ + I++S            E  
Sbjct: 309 YETVLSWPQFDAWLAKIEAAELTALDTETTSLDSFAARIVGISLSVTPG--------EAC 360

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486
           +I L+ HT+          +E+L+ LK + E+    K+  N KYD+ V   +GI++ G  
Sbjct: 361 YIPLA-HTAP-GVADQLPREEVLARLKSWLESAAHKKVLQNAKYDQHVFANHGIALSGIA 418

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D ML SYV++S +  HD+  +  + L       +++       I  D++   +   +A 
Sbjct: 419 HDTMLQSYVIESDKG-HDLGQLCTRHLGLATIAYEDLCGKGAKQITFDQVDIERAATYAA 477

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E+S+V L++  +L P+   E  L  +Y  ++ P   V+ Q+E  GI ID D+L + S E+
Sbjct: 478 EDSDVTLRVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEM 537

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
            + +++LE   Y+L+G+ FNL+SPKQL DILF K   P   KT +G   T  + L ++  
Sbjct: 538 GQKIMALEAQAYELAGQPFNLASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELAL 597

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+K TY D LP  +N +T RVHT +S A+ +TGRLAS +PNLQN
Sbjct: 598 -DYPLPKLLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFSQAAVVTGRLASSDPNLQN 656

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++++ G+KIR AFI+P    ++SADYSQIELRI+AH++    L   F +  D+H+  A
Sbjct: 657 IPVRSEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFAHGEDVHKATA 716

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            EIFGV   +V P  RR AK+INF +IYG+S F LA QL + RS A  YI RYF R+PG+
Sbjct: 717 GEIFGVTPLEVGPDQRRVAKSINFGLIYGMSAFGLARQLGLERSAAQTYIDRYFARYPGV 776

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E+ +   RQ+GYVET FGRR+ + +I S   + R   ERAAINAP+QG+AAD+ + 
Sbjct: 777 ARYMEEARESARQHGYVETAFGRRLWFPDIRSSNGNRRQGAERAAINAPMQGTAADLIKL 836

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI+V   LE   L ++++LQ+HDEL+ EVP+ E+      +   M +       L+VPL
Sbjct: 837 AMIAVQNWLEKSALKSRLILQVHDELLLEVPDGELMDVRTHLPRLMGQVA----ELKVPL 892

Query: 963 KVNIKVSNNWQ 973
            V + V  NW+
Sbjct: 893 VVEVGVGPNWE 903



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/247 (39%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  AI G  NML +L  + + E    + AV+FD
Sbjct: 4   LLLVDGSSYLYRAFHALPDL-RNKAGEPTGAIYGVLNMLRRLESDYKAE----YKAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP+YKA+RP +P+ L+ Q+  +  A +A G P + + G EADD+I T   
Sbjct: 59  AKGKTFRDDWYPEYKAHRPPMPDDLVQQIEPLHAAIKAAGWPLLMVDGVEADDVIGTLAT 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G    I + DKDL QLVS     Y+T+  E +D   V  K+G+PP K+V   AL 
Sbjct: 119 NATADGIETLISTGDKDLTQLVSSHVRWYNTMSNELLDEAGVEAKFGVPPGKIVDYLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++D +PG+   G KTA   L +YG+L+ ++ +A+ I      +N+ ++     L ++L
Sbjct: 179 GDTVDGVPGVAKCGPKTALKWLAQYGSLDEVVAHANEIG-GVVGQNLRDHLGFLPLGKRL 237

Query: 247 VMLRTDV 253
           V +  D+
Sbjct: 238 VTVACDL 244


>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
 gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
          Length = 913

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/615 (40%), Positives = 366/615 (59%), Gaps = 27/615 (4%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET- 426
           Y  +   +    W+Q++      SF   T ++D   ++ + +           SF VE  
Sbjct: 316 YETVQTWEQFDAWLQRINAAELTSFDTETTSLDPMTAQIVGL-----------SFSVEAG 364

Query: 427 --IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++ ++ H   D+       +E+L+ LK + E+    K+G ++KYD+ VL  YGI MR
Sbjct: 365 HAAYVPVA-HRGPDAP-VQLPREEVLAKLKPWLESAQQKKVGQHLKYDEQVLANYGIEMR 422

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540
           G E D +L SYVL+S R  HD+ ++A + L       +++       I  D+++  +  E
Sbjct: 423 GIEHDTLLQSYVLESHRP-HDMDNLALRHLGVKTIKYEDVAGKGAQQIGFDEVALEKAAE 481

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L   + P+L  EK L +VY  ++ P   V+ +ME TG+ ID + L+Q S
Sbjct: 482 YAAEDADITLRLHQTMYPQLAAEKTLENVYRDIEVPTSRVLRKMERTGVLIDAEKLRQQS 541

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L++
Sbjct: 542 NEIATRLIELESKAYELAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQK 601

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PN
Sbjct: 602 L-AEDYPLPKILLEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAVTGRLASNDPN 660

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F    DIHR
Sbjct: 661 LQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHR 720

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAEIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+
Sbjct: 721 ATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARY 780

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+  Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+
Sbjct: 781 PGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADL 840

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + +MI+V K +E+  + T+M++Q+HDEL+ EVP+EE+    + +   M         L+
Sbjct: 841 IKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDEELPEVRKRLPELMCGVAA----LK 896

Query: 960 VPLKVNIKVSNNWQE 974
           VPL   +    NW+E
Sbjct: 897 VPLVAEVGAGLNWEE 911



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/256 (41%), Positives = 156/256 (60%), Gaps = 9/256 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP+YKANRP +P+ L  Q+  + +A +A G P + I G EADD+I T + 
Sbjct: 67  AKGKTFRDDWYPEYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLST 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK G  V + + DKDL QLVS    L +T+  EK+D   V+ K+G+PPE++V   +L 
Sbjct: 127 EAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ I+ +A  IK     +N+    +   ++RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTALKWLTQYESLDGIVAHAGEIKGAV-GDNLRRALDFLPMARKL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V +  +  +T   EH+
Sbjct: 246 VTVERNCDLT---EHI 258


>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
 gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
          Length = 913

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/612 (40%), Positives = 365/612 (59%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   +    W+QK+      SF   T ++D   ++ + ++ S ++        V   
Sbjct: 316 YETVQTWEQFDVWLQKINAAEITSFDTETTSLDPMVAQIVGLSFS-VEAGHAAYVPVAHR 374

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
             D  V   +D         E+L+ LK + E+    K+G ++KYD+ VL  YGI MRG E
Sbjct: 375 GPDAPVQLPRD---------EVLAKLKPWLESAEHKKVGQHLKYDEQVLANYGIEMRGVE 425

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R  HD+ ++A + L   +   +++       I  D+++  +  E+A 
Sbjct: 426 HDTLLQSYVLESHRP-HDMDNLALRHLGIKTIKYEDVAGKGAQQIGFDEVALDKAAEYAA 484

Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ L+L   L P+L  E+ L HVY  ++ P   V+ +ME +G+ ID + L+Q S+EI
Sbjct: 485 EDADITLRLHQTLYPQLAAEETLEHVYRDIEVPTSRVLRKMERSGVLIDAEKLRQQSSEI 544

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++  
Sbjct: 545 ATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKL-A 603

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 604 EDYPLPKILLEHRGLSKLKSTYTDKLPRMVNANTGRVHTNYAQAVAVTGRLASNDPNLQN 663

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 664 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSEGEDIHRATA 723

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AEIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 724 AEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGV 783

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 784 ARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 843

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V K +E+  + T+M++Q+HDEL+ EVP+EE++   + +   M         L+VPL
Sbjct: 844 SMIAVQKWIEESNIGTRMIMQVHDELILEVPDEELSDVRKRLPELMCGVA----ALKVPL 899

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 900 VAEVGAGLNWEE 911



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 107/256 (41%), Positives = 156/256 (60%), Gaps = 9/256 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YPDYKANRP +P+ L  Q+  + +A +A G P + I G EADD+I T + 
Sbjct: 67  AKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLST 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK G  V + + DKDL QLVS    L +T+  EK+D   V+ K+G+PPE++V   +L 
Sbjct: 127 EAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ I+ +A  IK     +N+    +   ++RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTALKWLTQYESLDGIVAHADEIKGAV-GDNLRRALDFLPMARKL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V +  +  +T   EH+
Sbjct: 246 VTVERNCDLT---EHI 258


>gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
 gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
          Length = 909

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/611 (39%), Positives = 364/611 (59%), Gaps = 24/611 (3%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +++   + +W+  +E     +F   T ++D   ++ + +A++    +          +I 
Sbjct: 314 VLSLSQLDEWLAAIEEAPLFAFDTETTSLDYMQAEIVGVALAVATDR--------AAYIP 365

Query: 431 LSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-E 487
           L+     D  G    L ++ +L+ L+   E+    K+G N+KYD  VL  YGI++RG   
Sbjct: 366 LA----HDYPGAPEQLDRDLVLTRLRPLLEDSQRAKVGQNLKYDANVLANYGIALRGIAH 421

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIE 544
           D ML SYVLD+  S HD+ ++A K+L       +E+       I  + ++  Q   +A E
Sbjct: 422 DSMLESYVLDATGSRHDMDTLALKYLGEKTTHFEEVAGKGAKQITFNAVAIEQAAPYAAE 481

Query: 545 NSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           ++ V L+L   L PKL  E  L  +Y  ++ P++ ++S++E  G ++D+ LL   S E+ 
Sbjct: 482 DAAVTLKLHQTLWPKLESEAYLSTLYRDIELPLVPILSRIERNGARVDRQLLADQSHELG 541

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + L  LE++ +DL+G+ FNL SPKQLG+ILF KL+ P   KT  G   +TA+D+      
Sbjct: 542 ERLAILEQSAHDLAGQAFNLGSPKQLGEILFQKLELPVLKKTPKGA-PSTAEDVLAELAL 600

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D P+   ++E+R LSK++STY D LP+ I+  T RVHT Y  A T TGRL+S +PNLQNI
Sbjct: 601 DYPLPAVLMEYRSLSKLRSTYTDRLPDMIDPGTGRVHTSYHQAVTATGRLSSSDPNLQNI 660

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI+T  G++IR+AF +P  + +++ADYSQIELRI+AH+++   L   F  +LD+H   AA
Sbjct: 661 PIRTAEGRRIRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLLGAFGANLDVHSATAA 720

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           E+FGV +E VS   RR AK INF +IYG+S F LA QLR+ R EA  YI RYF R+PG+ 
Sbjct: 721 EVFGVPLEDVSSDQRREAKAINFGLIYGMSAFGLAKQLRLGRHEAQAYIDRYFERYPGVA 780

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +Y+ +T+      GYVET+FGRR++  EIN+     +   ER AINAP+QG+AADI + A
Sbjct: 781 DYMTQTRELAHSQGYVETLFGRRLYLPEINARNKQRQMAAERTAINAPMQGTAADIIKLA 840

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           MI+V + L    +   M++Q+HDELVFEV + E+ T +  I   M        +L VPL 
Sbjct: 841 MIAVDEWLSKTDIDALMIMQVHDELVFEVADTEVATLTSAIPDLMADVA----SLDVPLL 896

Query: 964 VNIKVSNNWQE 974
           V   V  NW +
Sbjct: 897 VEAGVGTNWDQ 907



 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 168/309 (54%), Gaps = 15/309 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DGSS+++RA++A P L+    GL   A  G   M+ +L+ +   + +     V+
Sbjct: 3   GSLILIDGSSYLFRAYHALPPLTNSK-GLNTGAAKGVVGMVRRLVADYPGDQVV----VV 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRNEIY +YKANRP +PE L  Q+  +    +A G+P + + G EADD+I T 
Sbjct: 58  FDAKGPTFRNEIYAEYKANRPPMPEELREQIEPIHAMIRAMGLPLVCVSGVEADDVIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A     +V I + DKD+ QLV     L +T+    +D   V+ K+G+PPE ++ L A
Sbjct: 118 ALEAAARQQSVLISTGDKDMAQLVGDHVTLINTMTNTTMDHGGVVDKFGVPPELIIDLLA 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GD +DNIPG+PG+G KTA  LLQ  G L +I  + SR+        +K    + E+ E
Sbjct: 178 LQGDKVDNIPGVPGVGEKTALALLQNLGGLNDIFADLSRVADLAVRGAQKLGARLAEHRE 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-- 296
           +A LS +L  ++TD  + +  + L+ +  +   L  + K LEF   ++   T    D+  
Sbjct: 238 SAELSYRLATIKTDCELELSTDDLLAKAPDSAALTYWYKELEFKGWLSEALTDDALDSPS 297

Query: 297 --ANIEPVV 303
             A +EP+ 
Sbjct: 298 EVAVVEPLA 306


>gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/530 (42%), Positives = 326/530 (61%), Gaps = 10/530 (1%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507
           ++  L+    +    KI  N KYD LVL R G+ + G   D ML SY+ +    SH + +
Sbjct: 366 VIDKLRPLMADTQLAKIAQNAKYDLLVLRRAGLEVAGLSCDTMLASYLANPAAKSHGLDT 425

Query: 508 IAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +A + L Y      E+    K  I  +++   +   +A E++++ L+L   L P+L    
Sbjct: 426 LASELLGYRTIGYTEVTGKGKKQIGFEEVEIEKATVYATEDADITLRLADKLEPQLAETG 485

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              ++  ++ P++ V+S ME  G++ID D LK +SA++   L +LE  I++LSG  FN++
Sbjct: 486 QGELFRTVELPLVTVLSDMEWQGVRIDADFLKGLSADMKTRLATLEGEIHELSGRSFNVA 545

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG++LF  LK P G KTKTG W T  + L  +   ++PI   +L++R ++K+KSTY
Sbjct: 546 SPKQLGEVLFEHLKLPRGKKTKTG-WSTDVEVLTNL-AEEHPIAARVLDYRSVAKLKSTY 603

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D+LP  I+  T R+HT ++ A T TGRL+S +PNLQNIPI+T+ G++IR AF+      
Sbjct: 604 CDALPKLIHPDTGRIHTSFNQAVTATGRLSSSDPNLQNIPIRTEEGRRIREAFVPAEGNL 663

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L++ADYSQ+ELRILAH+A    L + F +  DIH   A+EIFGV +E V+P+MRR AKTI
Sbjct: 664 LLAADYSQVELRILAHMADEPALKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTI 723

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF ++YG+S F LA  L I R EA  YI  YF R+P + E++E  K   R+  YV T+ G
Sbjct: 724 NFGVLYGMSAFGLAKSLGIARKEAQTYIDNYFARYPKVLEFMEAKKAEAREKQYVTTLLG 783

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR    EI S   ++R   ER AIN PIQGSAADI + AM+ +H+ L+  KL TKM+LQ+
Sbjct: 784 RRCAVPEIASKNGAVRGYAERNAINYPIQGSAADIIKVAMLRIHERLKAEKLETKMVLQV 843

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDELVF++P  E      ++   ME A      L VPL V++ V  NW+E
Sbjct: 844 HDELVFDMPAAEQAAVENLVREQMEHA----FELDVPLLVDMGVGRNWRE 889



 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/297 (44%), Positives = 196/297 (65%), Gaps = 5/297 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+DGSS+IYRA+YA   LS    GL  NA+ GF NML K++++ + +    H AVIFD
Sbjct: 8   IYLIDGSSYIYRAYYAIRQLSNSK-GLATNAVYGFTNMLLKVVRDEQPD----HLAVIFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR EIYP+YKANR  +PE L PQ+P+++   +AF +PA+E++G+EADDIIAT   
Sbjct: 63  AKGPTFRKEIYPEYKANRSAMPEDLRPQIPVIKELVKAFNMPALELEGYEADDIIATLAR 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              + G AVT+++ DKDLMQ+VS    L DT+K++ + +  V +++G  P+K+V +QAL 
Sbjct: 123 RFAERGMAVTVVTGDKDLMQVVSERVRLLDTMKDQVVGLAEVAERFGGTPDKVVEVQALA 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DN+PG+PGIG KTA  L+ ++G LEN+L N  ++  KKR+EN+ ++ E ARLS+KL
Sbjct: 183 GDSSDNVPGVPGIGEKTARTLIAQFGTLENLLANIDQVSGKKRQENLRQFGEQARLSKKL 242

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           V L  D+ + +  ++  L + N   L    K LEF KL+   ++       + + VV
Sbjct: 243 VSLVDDLSLDVDYDNFDLSEPNHEALTHLFKELEFHKLLQEFSSDERASGEHYQTVV 299


>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
 gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
          Length = 919

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/613 (40%), Positives = 361/613 (58%), Gaps = 21/613 (3%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +        W+ K+E     SF   T ++D   ++ + I++ST             
Sbjct: 321 NYETVQTWPQFDAWMAKIEAAELTSFDTETTSLDPMVAQIVGISLSTEPGS--------A 372

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            +I ++ H   D+  +     E+L+ LK + E+    K+G ++KYD  VL  Y I++ G 
Sbjct: 373 AYIPVA-HRGPDAP-EQLPRDEVLAKLKPWLESAERRKVGQHLKYDAQVLANYEIALNGI 430

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
           E D +L SYVL+S R+ HD+ S+A + L       +E+       I  D++       +A
Sbjct: 431 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAQQIGFDEVPLETAAAYA 489

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ LQL L + P++  E  L  VY  ++ P+  V+ +ME TG+ ID   L + S E
Sbjct: 490 AEDADITLQLHLAMYPQVAREPGLKRVYAEIEMPVSLVLRRMERTGVLIDSARLDKQSHE 549

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++ 
Sbjct: 550 IAVRLIELEREAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL- 608

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  IN RT RVHT Y+ A  +TGRLAS +PNLQ
Sbjct: 609 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMINARTGRVHTNYAQAVAVTGRLASNDPNLQ 668

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI++   L + F    DIHR  
Sbjct: 669 NIPVRTAEGRRIREAFIASPGCRIVSADYSQIELRIMAHISEDESLLRAFSQGEDIHRAT 728

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG
Sbjct: 729 AAEVFGVTPLEVSNDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPG 788

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ +
Sbjct: 789 VANYMETTRAVAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 848

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +MI+V   LE  KL ++M++Q+HDELV EVPE+E+    + +   M         L+VP
Sbjct: 849 LSMIAVDGWLERDKLRSRMIMQVHDELVLEVPEDELALVREKLPEMMSGVA----KLKVP 904

Query: 962 LKVNIKVSNNWQE 974
           L   +   +NW+E
Sbjct: 905 LVAEVGAGDNWEE 917



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/245 (41%), Positives = 148/245 (60%), Gaps = 6/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVTAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++ DYKANRP +P  L  Q+  +  A +A G P + I+G EADD+I T  +
Sbjct: 67  AKGKTFRDDLFADYKANRPSMPTDLALQIEPIHQAVRALGWPLLMIEGVEADDVIGTLAH 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE  G  V I + DKDL QLV+    L +T+  E +D E VI K+G+PPE++V   +L 
Sbjct: 127 AAEARGMKVVISTGDKDLAQLVTERVTLVNTMSNELLDREGVIAKFGVPPERIVDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y  L+ ++ +A+ IK     +N+    +   L+RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYETLDGVVEHAAEIKGVV-GDNLRRALDFLPLARKL 245

Query: 247 VMLRT 251
           V + T
Sbjct: 246 VTVET 250


>gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
 gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
          Length = 950

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 292/994 (29%), Positives = 488/994 (49%), Gaps = 90/994 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++     +    H AV F
Sbjct: 16  LLVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDTEHPD----HLAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRN + P YK  R   PE LL QLPL++    A G+  IE  G+E DD+I T  
Sbjct: 72  DVKGGTFRNMMLPQYKGTRDAAPEDLLSQLPLIQRMLSALGVTYIEQPGYEGDDVIGTLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QL++   T LY        D++H     V++K+ + PE+ 
Sbjct: 132 TMGDKAGYRTLVLSGDRDAFQLINDNITVLYP--GHHFKDLKHMTSDAVVEKYHVTPEQY 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236
             L AL G++ DNIPG+PG+G   AA  + +YG L+ I+ +A  I  KK    RENI   
Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDQIIEHADEITGKKGEALRENI--- 246

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCD 295
            E  +L+R +  L  D+ + + L+ L     +  RL      LEF  +  NRV  T++  
Sbjct: 247 -EQVKLNRSVNALVRDLELDVTLDDLTFGTVDTARLNDLFSKLEFGIRTRNRVLKTFNA- 304

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                        T   G+ ++ E +R    +    +   +  + +++   P    L   
Sbjct: 305 ------------GTTTAGVTVQPESNRVVLPEVMTITHGDELRTWVDANMPPADEHLHGD 352

Query: 356 QKLSQYPINNDSYTKIVNTKDI-----QQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
            + +   I  D+ + I NT          WV + E +       +   M   + K   I 
Sbjct: 353 DEDANPAI--DAGSLIGNTMTCTNAVNHSWVLQAEGVAKPGNASMASLMLMVNGKGAQI- 409

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
               +  DD+                            I + L+   +  H   + H  K
Sbjct: 410 ----EHVDDS----------------------------IANELQHMLDGYHRSMVVHGYK 437

Query: 471 YDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSRKSSI 528
             + +L   GI++     D  L  Y++     +  +   A  +L  +  ++  ++ + ++
Sbjct: 438 EQQHLLESVGITLPTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTL 497

Query: 529 PIDKI-SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEIT 586
            +D +   S  Q   ++    I+ +   +   L+ ++    + + ++ P+  V+  ME  
Sbjct: 498 DLDDMDGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHA 557

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G Q+D   L ++  + + +    +E  ++ +GE+ NL SPKQL  ILF  +      KTK
Sbjct: 558 GAQVDMIRLTEMRDQFAADARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTK 617

Query: 647 TGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +G + T A  L+ +      N   N  +  +L  R+ +K+K     +L +  N R  R+H
Sbjct: 618 SGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI-VQTLIDATNPRDGRIH 676

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T +      TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A
Sbjct: 677 TTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRSAFVPGEGYESLLSSDYSQVELRIMA 736

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    L + F +  D H+ VA+ ++G+ +E+++   R H K +++ + YG+S + LA 
Sbjct: 737 DLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGLSTYGLAQ 796

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA     +YF  F  +HEY+E   +  R+ GY ETI+GRR ++  + SP  ++
Sbjct: 797 QLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAV 856

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ERAA+NAPIQGSAADI + AMI    SL D  L ++++LQIHDELV E+   E   
Sbjct: 857 RDAAERAALNAPIQGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQ 916

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           A+ ++ ++ME A    + + VPL  +  + ++WQ
Sbjct: 917 ATALVRNAMEHA----VTMAVPLDASTGIGSDWQ 946


>gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 677

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/622 (39%), Positives = 369/622 (59%), Gaps = 21/622 (3%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ + +D+  
Sbjct: 69  SAVTIDRSQYETILDEASFNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFA-IDEGI 127

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V   ++D      +D          +L  LK   E++   K+G N+KYD  VL R
Sbjct: 128 AAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLAR 178

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           YGI M+G + D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I 
Sbjct: 179 YGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQIE 238

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID  
Sbjct: 239 LEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDM 298

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T 
Sbjct: 299 KLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTN 358

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGRL
Sbjct: 359 EEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRL 417

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F +
Sbjct: 418 SSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRD 477

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+ 
Sbjct: 478 GKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMD 537

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+Q
Sbjct: 538 KYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQ 597

Query: 894 GSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G+AADI ++AM+ V + + E+     K+L+Q+HDELVFEV E  ++     +   ME A 
Sbjct: 598 GTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAA 657

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L+VPL       +NW +
Sbjct: 658 ----ELKVPLVAEAGHGDNWDQ 675


>gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400]
 gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400]
          Length = 913

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/612 (40%), Positives = 366/612 (59%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   +    W+ K+      SF   T ++D   ++ + +++S    +          
Sbjct: 316 YDTVQTWEQFDAWLGKINAAELTSFDTETTSLDPMIAQIVGLSLSVEAGR--------AA 367

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ L+ H   D+        E+L+ LK + E+    K+G ++KYD+ VL  YGI MRG E
Sbjct: 368 YVPLA-HRGPDAP-VQLPRDEVLARLKPWLESAGHKKVGQHLKYDEQVLANYGIEMRGIE 425

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYV++S R+ HD+ S+A + L       +E+       I  D+++  +  E+A 
Sbjct: 426 HDTLLQSYVVESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAA 484

Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ L+L  +L P++  EK L +VY  ++ P   V+ +ME TG+ ID + L+Q S+EI
Sbjct: 485 EDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEI 544

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 545 ATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKL-A 603

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 604 EDFPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQN 663

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+P   KL+SADYSQIELRI+AHI+    L   F    DIHR  A
Sbjct: 664 IPVRTGEGRRIREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQGEDIHRATA 723

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AEIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 724 AEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGV 783

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 784 ARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 843

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V K +E+ K+ T+M++Q+HDEL+ EVP+ E++   + +   M        +L+VPL
Sbjct: 844 SMIAVQKWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVA----DLKVPL 899

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 900 VAEVGAGLNWEE 911



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/250 (40%), Positives = 153/250 (61%), Gaps = 6/250 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y DYKANRP +P+ L  Q+  + +A +A G P + I+G EADD+I T + 
Sbjct: 67  AKGKTFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLST 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK G  V + + DKDL QLVS    L +T+  EK+D   V+ K+G+PPE+++   +L 
Sbjct: 127 EAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDYLSLV 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L ++ +L+ I+ +A  IK     +N+    +   +++KL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGAV-GDNLRRALDFLPMAKKL 245

Query: 247 VMLRTDVPIT 256
           V +  +  +T
Sbjct: 246 VTVERNCDLT 255


>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
 gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
          Length = 896

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/619 (41%), Positives = 376/619 (60%), Gaps = 29/619 (4%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTS 421
           NN SY  I   + +  W+ KLE   S  F I T+T  +D   ++ + I+++   ++D+ S
Sbjct: 297 NNKSYEIITTHQQLNHWLNKLEQ--SQQFCIDTETTNLDVMQAELVGISLAV--EEDNAS 352

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +      I L+ HT     G   L KE +L+ LK   EN    KIG NIKYD  VL  YG
Sbjct: 353 Y------IPLA-HTD----GSTQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYG 401

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I+++G   D ML SYVL+SG   HD+ S+A K+L Y   + +++       +  D+I   
Sbjct: 402 ITLQGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVE 461

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E++++ L+L   L P ++ + L +V   ++ P++ V++ ME+ G+ ID  +L+
Sbjct: 462 KAGIYAAEDADITLRLHHKLYP-MLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILE 520

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +  + + + + SLE+    L+G+ FNL+SPKQL +ILF + K P  AKT TGQ  +TA+ 
Sbjct: 521 KHGSRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQ-PSTAES 579

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + Q    D  +   ILE+R LSK+ STY D+LP  IN +T RVHT Y+ A   TGRL+S 
Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  D
Sbjct: 640 DPNLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWD 699

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+EIF  N+E VS + RR AK +NF +IYG+S F LA Q+ + R +A  YI  YF
Sbjct: 700 IHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYF 759

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P + EY+E+T+    Q GYVET+FGRR++  EINS     +   ER AIN P+QG+A
Sbjct: 760 RRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTA 819

Query: 897 ADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           ADI ++ M++V       K  + KM++Q+HDELVFEV +E +     II   ME+     
Sbjct: 820 ADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECHAIIHKLMEQT---- 875

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L VPL V+I   +NW +
Sbjct: 876 VKLSVPLVVSIGTGSNWDD 894



 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 175/304 (57%), Gaps = 23/304 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+ +RAF+A P L+    G P  AI G  NM+ K++++ + E IA    V+FD
Sbjct: 5   LILIDGSSYFFRAFHALPPLTNS-KGQPTGAIYGVANMIKKIIKDYQPEEIA----VVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+E YP+YKA+RP +P+ L  Q  PL++L  QA G+P + I G EADD+I T  
Sbjct: 60  AKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQL-LQAMGLPLLIIDGVEADDVIGTLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A ++G  V I + DKD+ QLV+    L +T+    +DI+ V  K+G+ PE+++    L
Sbjct: 119 KQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA----R 241
            GDS+DNIPG+   G KTA   L EY  L+N+L +A+ I  K     I EY   +     
Sbjct: 179 IGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGK-----IGEYLRASIPHLP 233

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-------ATTYDC 294
           LS+KLV ++TD+ + + L  L+ +  +  +LI   + LEF   +  +        +T + 
Sbjct: 234 LSKKLVTIKTDLDLPLNLNQLMPKPADSEQLIKLTRELEFKSWLKELLQEEENQKSTKEM 293

Query: 295 DAAN 298
           DA N
Sbjct: 294 DAGN 297


>gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605]
 gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605]
          Length = 986

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 335/1032 (32%), Positives = 512/1032 (49%), Gaps = 121/1032 (11%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K DG P +   GF   L  LL NS K       
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGF---LKALLDNS-KTLQPEGV 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
           A+ FD    TFR++   +YKA+R   PE+    L  L ++      +P     GFEADD+
Sbjct: 65  AIAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLEQLQQILETHLQLPLCMAPGFEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A   G+ V I+S D+DL QLV  +     LY        +     I  E V+ 
Sbjct: 125 LGTLANRAADSGWGVRILSGDRDLFQLVDDSRDIAVLYMGGGPYAKSSGPTLIREEGVLG 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILIN--- 220
           K G+ P+K+V L+ALTGDS DNIPG+ G+G KTA  LL++       Y  LE +      
Sbjct: 185 KLGVIPDKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNSDLDAVYATLEEVEAEGPK 244

Query: 221 ASRIKQKKR-RENILEYAETARLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISF 275
           ASR   K   +E +    + A LSRKL  +  DVP+    ++PL  +   D +G  L S 
Sbjct: 245 ASRGAIKGALKEKLRADRDNAYLSRKLAEILVDVPLPKEPSLPLSSV---DADG--LSSC 299

Query: 276 LKALEFTKLINRVA---TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS 332
           L+ LE   L+ +V      +                            +  T   T+   
Sbjct: 300 LEDLELNSLLRQVGGFVAAFSEGGYGANAEAAAAKPPHRSATTEPAAAETATEPVTNDDV 359

Query: 333 SLSDQTSKINSEQTPQKLFLERLQKL--SQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
            +     K+   +T     ++RL     S  P+  D+ T  +N                 
Sbjct: 360 GVPALKPKLIQTETALDALVQRLMACTDSSLPVAFDTETTDLNP---------------- 403

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
                      F ++ + I I   +  D  ++      I L    S+DS  +    + +L
Sbjct: 404 -----------FRAELVGIGICWGEDLDALAY------IPLGHKGSEDSIPEQLSLETVL 446

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           + L  +  + +  K   N KYD+L+L R+GI++ G   D +L  Y+ D+  + H +  +A
Sbjct: 447 TALAPWLASSNHPKTLQNAKYDRLILLRHGIALEGVVIDTLLADYLRDA-SAKHGLELMA 505

Query: 510 QKWL-----SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IV 562
           ++       S+T     K   + +P++  S      +   + +V  +L LLLR +L  + 
Sbjct: 506 EREFGFQPTSFTDLVGKKQTFADVPLEPAS-----LYCGMDVHVTRRLALLLRHQLETMG 560

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +LL + E++++P+  V+++ME TGI+ID   L+ +S E+   L  LE +    +G  FN
Sbjct: 561 PQLLPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTLQQLESDAKAAAGVDFN 620

Query: 623 LSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           L+SPKQLG++LF  L        +TKTG + T A  LE++   D+P++  +L+ R LSK+
Sbjct: 621 LASPKQLGELLFDTLGLDRKKSRRTKTG-FSTDATVLEKLG-NDHPVVPLVLDHRVLSKL 678

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           KSTY D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+  
Sbjct: 679 KSTYIDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQ 738

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
               L+SADYSQIELRIL H++    L + +    D+H + A  +  ++ ++VSP  RR 
Sbjct: 739 EGWTLLSADYSQIELRILTHLSGEKVLQEAYRGGDDVHALTARLL--LDKDEVSPDERRL 796

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            KTINF +IYG+   R A +  + +SEA +++ +Y  R+P +  ++E  +      GYVE
Sbjct: 797 GKTINFGVIYGMGAQRFARETGVSQSEAKEFLVKYKQRYPKVFAFLELQERLALSRGYVE 856

Query: 861 TIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRR 902
           TI GRR   H+D             EI+   + +  +     RAA NAPIQGS+ADI + 
Sbjct: 857 TILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKV 916

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ +  +L    L  ++LLQ+HDELV EV  + + T   ++V +ME+A      L VPL
Sbjct: 917 AMVQLQDALLRQGLPAQLLLQVHDELVLEVAPDALETTRDLVVRTMEQA----FELSVPL 972

Query: 963 KVNIKVSNNWQE 974
            V   V  NW E
Sbjct: 973 VVETGVGANWME 984


>gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01]
 gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01]
          Length = 960

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/617 (39%), Positives = 367/617 (59%), Gaps = 27/617 (4%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV--- 424
           Y  ++    +  W+QKL+     +F   T ++DA  ++ + +           SF V   
Sbjct: 359 YQLVLEQAQLDAWLQKLKQAELIAFDSETTSIDAQQAQLVGL-----------SFAVKAG 407

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG--IS 482
           E  +I L+   S     +      +L+ LK   E+    K+G + KYD  VL      I 
Sbjct: 408 EAAYIPLA--HSYMGVPQQLDRDAVLNALKPILEDPAKAKVGQHAKYDINVLANASTPIM 465

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           ++G   D ML SYVLDS  + HD+ S+A K+L+++    ++I       +  D+I+  Q 
Sbjct: 466 VQGVAFDTMLESYVLDSTATRHDMDSLALKYLNHSTIRFEDIAGKGAKQLTFDQIALEQA 525

Query: 539 QEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V L+L   L  +L  +  L  V   ++ P++ V++++E  G  +D  LL +
Sbjct: 526 GPYAAEDADVTLRLHQELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNGALVDAKLLGE 585

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+ + L+ LE   ++++GE+FNL+SPKQLG IL+ KL +P  +KT  GQ  T    L
Sbjct: 586 QSVELGEKLVELERKAFEIAGEEFNLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVL 645

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            ++   D  + K ++++R LSK+KSTY D LP  IN RT R+HT Y  A   TGRL+S +
Sbjct: 646 AELAEQDYELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVAATGRLSSSD 705

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L   F   LD+
Sbjct: 706 PNLQNIPIRTAEGRRIRQAFVAPKGYKLMAADYSQIELRIMAHLAKDEGLLDAFRYDLDV 765

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H+  AAE+FGV +++V+   RR AK INF +IYG+S F LA Q+ + R EA  YI RYF 
Sbjct: 766 HKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVERKEAQAYIDRYFA 825

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+  Y+E T+    + GYVET++GRR++  EI++   ++R   ERAAINAP+QG+AA
Sbjct: 826 RYPGVLTYMESTRAQAAEQGYVETVYGRRLYLPEIHAQNQAMRKGAERAAINAPMQGTAA 885

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+D  +  +++LQ+HDELV EV EE I   S  +   M  A     +
Sbjct: 886 DIIKRAMIAVDGWLQDSGIDARIILQVHDELVLEVREELINEVSAKLKSLMSGAA----D 941

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VP+ V + V  NW E
Sbjct: 942 LDVPMLVEVGVGANWDE 958



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/288 (37%), Positives = 160/288 (55%), Gaps = 14/288 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FAV+FD
Sbjct: 31  LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 85

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I T   
Sbjct: 86  AKGGTFRDELFAEYKANRPSMPDELRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 145

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  E   V I + DKD+ QLV P   L +T+     D + V +K+G+ PE ++   AL 
Sbjct: 146 QAAGEKRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDADGVKEKFGVGPELIIDYLALM 205

Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          L   Y NL+ +     R   K     + E+ E
Sbjct: 206 GDKVDNIPGVPGVGEKTALGLLVGVGGGLDVLYANLDKVPELPIR-GAKGLPAKLEEHRE 264

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            A LS +L  ++TDVP+ I ++ L   + +   L+     LEF   ++
Sbjct: 265 MAYLSYQLATIKTDVPLNIEIDSLHPGEPDQAALVELYGQLEFKNWLD 312


>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 896

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/619 (40%), Positives = 376/619 (60%), Gaps = 29/619 (4%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTS 421
           NN SY  I   K +  W+ KLE   S  F I T+T  +D   ++ + I+++   ++++ S
Sbjct: 297 NNKSYEIITTHKQLNHWLNKLEQ--SQQFCIDTETTNLDVMQAELVGISLAV--EEENAS 352

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +      I L+ HT     G   L KE +L+ LK   EN    KIG NIKYD  VL  YG
Sbjct: 353 Y------IPLA-HTD----GSTQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYG 401

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I+++G   D ML SYVL+SG   HD+ S+A K+L Y   + +++       +  D+I   
Sbjct: 402 ITLKGIGYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVV 461

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E++++ L+L   L P ++ E L +V   ++ P++ V++ ME+ G+ ID  +L+
Sbjct: 462 KAGIYAAEDADITLRLHHKLYP-MLDESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILE 520

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +  + + + + SLE+    L+G+ FNL+SPKQL +ILF + K P  AKT TGQ  +TA+ 
Sbjct: 521 KHGSRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQ-PSTAES 579

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + Q    D  +   ILE+R LSK+ STY D+LP  IN +T RVHT Y+ A   TGRL+S 
Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  D
Sbjct: 640 DPNLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWD 699

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+EIF  N++ VS + RR AK +NF +IYG+S F LA Q+ + R +A  YI  YF
Sbjct: 700 IHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYF 759

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P + EY+E+T+    Q GYVET+FGRR++  EINS     +   ER AIN P+QG+A
Sbjct: 760 RRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTA 819

Query: 897 ADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           ADI ++ M+++       K  + KM++Q+HDELVFEV +E +     II   ME+     
Sbjct: 820 ADIIKKTMLAISSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECRAIIHKLMEQT---- 875

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L VPL V+I   +NW +
Sbjct: 876 VKLSVPLVVSIGTGSNWDD 894



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/280 (40%), Positives = 167/280 (59%), Gaps = 16/280 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+ +RAF+A P L+    G P  AI G  NM+ K++++ + E IA    V+FD
Sbjct: 5   LILIDGSSYFFRAFHALPPLTNSK-GQPTGAIYGVANMIKKIIKDYQPEEIA----VVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+E YP+YKA+RP +P+ L  Q  PL++L  QA G+P + I G EADD+I T  
Sbjct: 60  AKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQL-LQAMGLPLLIIDGVEADDVIGTLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A ++G  V I + DKD+ QLV+    L +T+    +DI+ V  K+G+ PE+++    L
Sbjct: 119 KQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA----R 241
            GDS+DNIPG+   G KTA   L EY  L+N+L +A+ I  K     I EY   +     
Sbjct: 179 IGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGK-----IGEYLRASIPHLP 233

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           LS+KLV ++TD+ + + L  L+ +  +  +LI   + LEF
Sbjct: 234 LSKKLVTIKTDLDLPLNLNQLMPKPADSEQLIKLTRELEF 273


>gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268]
 gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268]
          Length = 938

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 299/991 (30%), Positives = 497/991 (50%), Gaps = 85/991 (8%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D   F +R +YA   L  K DG P   ++GF +     + N  KE  + +     D  
Sbjct: 6   IIDTFGFFFRLYYAMSGLKTK-DGKPSGMVSGFAS----FIANLSKEFKSDYIIFALDSK 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR++I P+YK NR   P  LL QLP+     +  G+ ++  +G+EADD+IA+   + 
Sbjct: 61  GKTFRSDIDPNYKTNRQAPPPALLQQLPVCIEMIEKMGLYSLGREGYEADDLIAS---VV 117

Query: 129 EKEGFA--VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +K G    + I+++DKDL QL+     +Y   K+     E  ++++G+ PE++V   A+ 
Sbjct: 118 KKYGATHKINIVTSDKDLYQLIGENVKIYSHGKKMLYGREECLQRYGVYPEQIVDFLAIC 177

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPG+ GIG K A  LL E+G+L+ I  N  R+ Q K+RE ++E  ++A +S++L
Sbjct: 178 GDSADNIPGVRGIGDKGAKKLLDEWGSLDEIYSNLDRLPQNKQREYLIEGKQSAYISKRL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK--LINRVATTYDCDAANIEPVVL 304
             L  ++ I        LED   P+     K  E  K   +NR+ +       N     L
Sbjct: 238 ATLYDELEIPP------LEDAKFPQQNPLFKIREILKDYALNRLLSALSLQEQN----GL 287

Query: 305 DINTTENKGIAIETEI------------DRDTTIKTSQFSSLSDQTS----KINSEQTPQ 348
           D+   E KG   ++ +             R  +I  +    L  Q S       SE+  +
Sbjct: 288 DL-WGEGKGAGAKSSVLGAGGKGAGAESSRGGSILGAAVGGLDGQNSIPGGSACSEKNSE 346

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
             F    + +            I +  ++ +  + ++     SF   T ++D+  +K + 
Sbjct: 347 SAFKTPFEPIC-----------ITDAVELARLCESIDAETLVSFDTETTSIDSKSAKIVG 395

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            + +  +++      +   ++      S D+  K  +      Y+           +G N
Sbjct: 396 FSFA-FNEERAYYVPLAHSYLGAPAQISSDAA-KAAIDSLFRGYV-----------VGQN 442

Query: 469 IKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           +KYD ++V + + I     F D M+++++LD   ++  + SI+ ++L Y         K 
Sbjct: 443 LKYDFEIVKNNFNIEPPARFADTMVLAWLLDPA-NAVGMDSISPRYLGYETVHFGDVVKK 501

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                 +       +A E++ V L+L+  L+  L+   L  + + L+ P + V+ QM+  
Sbjct: 502 GETFASVELDAATIYASEDAWVTLRLYFKLK-GLLEPALFKLAQELEFPFVRVLWQMQRC 560

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+ID +++K++     K+L +L + IY+L GE+FN++SP QLG +LF +L  P+  +TK
Sbjct: 561 GIKIDVEMIKRLIGRNEKSLRALTDEIYELCGEQFNINSPAQLGAVLFERLGLPAAKRTK 620

Query: 647 TGQW--KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFY 703
           TG    ++  +DL  ++    P +  IL++R+L K++STY + L    +     RV + +
Sbjct: 621 TGYSTDESVLKDLTALH----PAVGKILDYRELFKLQSTYCEPLLQLALADAQNRVRSNF 676

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
               T TGRLAS  PNLQNIP +    + +R  F++     LIS DYSQIELR+LAH ++
Sbjct: 677 LQTGTATGRLASKNPNLQNIPARGTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSR 736

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F    DIH   A  IFG       P  R  AK+INF +IYG+   +L+  L I
Sbjct: 737 DPALLAAFRADEDIHARTAISIFG----DAQPAHRTIAKSINFGLIYGMGAGKLSDSLGI 792

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R+EA  YI+RYF  F  I E+++  K+  + +GYV T+FGRR ++D  N+  + +    
Sbjct: 793 ARAEAKGYIERYFAAFSTIKEFLQSIKSDAKADGYVSTLFGRRRYFDFANARNNMVYASY 852

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N   QGSAADI ++AM+ +   L       +++LQIHDEL+FEV ++        
Sbjct: 853 EREAVNTKFQGSAADIIKKAMVDISPLLNGE---ARLILQIHDELIFEVRDDLAQGFGAR 909

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               M+ A     +L VPLK ++ ++  W E
Sbjct: 910 AQEIMQSAA----SLNVPLKTSLNIAKRWGE 936


>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 922

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 301/978 (30%), Positives = 503/978 (51%), Gaps = 74/978 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S I RA+Y    L+   DG P+ A+  F N++ +      KE   +H AV FD
Sbjct: 6   LLLIDGNSLINRAYYGGTELNLA-DGTPIGAVYTFFNIVLRY----AKELHITHLAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR++++  YK+ R  + + L  Q   +++     G     + G+EADDI+ T   
Sbjct: 61  LPEPTFRHKLFHSYKSGRKPMSDDLATQFTFLKMILPELGWACYSLAGYEADDILGTLAK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVCLQ 183
            +  E   V I+S D+D +QLV     +    +   +       + + +G  P+  +  +
Sbjct: 121 QSCSEMEHVYILSGDRDTLQLVDSNISVIYPGRHSAVTFYTPARLQEDFGCTPKSFITYK 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ D +PG+PGIG  +A+ ++ ++ +L+ I  N S    K + + ++E   TA  +
Sbjct: 181 ALLGDTSDAVPGVPGIGKVSASKIVGQFSSLDEIYENLSAFSPKVQAK-LVEGRNTAYQA 239

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
             LV +   +P+   L  L L   +  +    +K   F  L+ ++   Y   AA +E   
Sbjct: 240 LALVTINCAIPLKWALADLSLAGSHD-KWREVIKKYSFNSLLEKMNVLYS--AAQVE--- 293

Query: 304 LDINTTENKGIAI-ETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                T+ K  A+ +++   D  I  ++ +SL ++ S      TP               
Sbjct: 294 -----TDKKETALADSDTIADEKIGATEKNSLPNE-SGTQETSTP--------------- 332

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTS 421
               +  + +NT + + W++    I      I+ +   + + + P       +DQ     
Sbjct: 333 ----ALYRFINTDEWRTWLENASPI-----LIMAERYPSIYIADPEQHVYICIDQ----- 378

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
               TIF D   +   + +GK  L   +   L++F      L   + + Y    +    I
Sbjct: 379 ----TIFPDF--YAWSELSGKKILCFSLKQILQRF---PALLSENNCVDYTTGTIIDLSI 429

Query: 482 SMRGFEDIMLMSYVLDSG---RSSHDIAS--IAQKWLSYTRKEILKSRKSSIPIDKISDS 536
                 D   ++Y+ D     R ++ I+S     K L      I  S ++      ++ +
Sbjct: 430 LAYACGDAQKVAYLSDLAELYRLNYPISSENTGMKELPENNCSI-SSAEAEAQAQAVAVA 488

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            + +  I   N I+ ++ L++ K+  + L ++  ++D P+++V++QME  G+ +D+ +L+
Sbjct: 489 DLNKELISYFNTIIAVYSLVKSKIESQGLNYLVSQVDLPLVEVLTQMERDGVAVDEAVLQ 548

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + +   S  +  + + IY L+G +FNL+SP+QL ++LF +L  P G K K+G + T+A+D
Sbjct: 549 RQTEAFSSEIADIADEIYKLAGHEFNLNSPRQLAEVLFNELGLPGGKKLKSG-YSTSAED 607

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L  +    +PI+  IL +R LSK+ ST+   L  +I     R+HT +    T TGRL+S 
Sbjct: 608 LMHLQ-DLHPIVDLILRYRMLSKLLSTFIVGLHKYI-AADHRIHTTFHQTLTQTGRLSSS 665

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP +T+ G++IR AFI+ P   LI ADYSQIELR+LAH++  T + + F    D
Sbjct: 666 DPNLQNIPARTEEGRRIRAAFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKED 725

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH + AA +F ++   V+ + RR  KTINFSI+YGIS F LA  L I  +EA +YI  Y+
Sbjct: 726 IHALTAARVFHMDPVDVTSEHRRVGKTINFSIVYGISAFSLAQDLHISVAEAKNYIAEYY 785

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P I  Y+       + +GYVET+F RR +  E+ S   + R   ER A+N PIQG+A
Sbjct: 786 ATYPQIKAYLNDLVERAKIDGYVETMFKRRRYIPELKSKNYNRRLFGERVAMNTPIQGTA 845

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI R AM+++ + L + KL + M+LQIHDELV EVPE E    ++++ + ME+     I
Sbjct: 846 ADIMRLAMVNLARKLREKKLKSHMILQIHDELVLEVPEPEFAEVAELLRNEMERV----I 901

Query: 957 NLRVPLKVNIKVSNNWQE 974
           +L+V L V ++   NW E
Sbjct: 902 DLKVSLPVELEYGKNWLE 919


>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
 gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
          Length = 917

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/612 (40%), Positives = 364/612 (59%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I   +    W  K++     +F   T ++D   ++ + ++ S    K          
Sbjct: 320 YDTIQTWEQFDAWFAKIDAAALTAFDTETTSLDPMLARLVGLSFSVESGK--------AA 371

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ ++ H   D   +  L  E+L+ LK + E+    K+G ++KYD  VL  Y I++ G E
Sbjct: 372 YLPVA-HRGPDMPEQLPL-DEVLARLKPWLESADRKKVGQHLKYDAQVLANYDIALNGIE 429

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYV++S R+ HD+ S+A + L       +++       I  D+++ +Q  E+A 
Sbjct: 430 HDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALTQAAEYAA 488

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  LLHVY  ++ P+  V+ +ME TG+ ID   L+  S EI
Sbjct: 489 EDADITLQLHHALYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDVRLQAQSTEI 548

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 549 ATRLIELEAQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRLASNDPNLQN 667

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 727

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 787

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E T++  ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 788 AQYMEDTRSVAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L   KLA++M++Q+HDELV EVP+ E++   + +   M         L+VPL
Sbjct: 848 SMIAVDDWLTRDKLASRMIMQVHDELVLEVPDGELSLVREKLPEMMCGVA----KLKVPL 903

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 904 VAEVGAGANWEE 915



 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 151/256 (58%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 127 EAERHGMNVVVSTGDKDLAQLVTDHVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L R L
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLAQYDSLDGVIEHAGDIKGVV-GDNLRRALDFLPLGRTL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +T  LE +
Sbjct: 246 VTVETACDLTPHLESI 261


>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
 gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
          Length = 898

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/619 (39%), Positives = 377/619 (60%), Gaps = 24/619 (3%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P+N  +Y+ I++ +    ++++L      SF   T +++   ++ + ++ +   +K    
Sbjct: 296 PVN--AYSLILDEQSFHVFLKQLTQANGWSFDTETTSLNVMQAELVGLSFAIGGEK---- 349

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                ++I L+ H   D+     L ++ +L  LK  FE+   +KIGH++KYD  +L  YG
Sbjct: 350 ----PVYIPLA-HDYPDAP--QQLNRQWVLQQLKPLFEDPKQIKIGHHLKYDMNILAHYG 402

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           I +RG + D ML SY+LDS  + H + S A K L +     +EI          ++I+  
Sbjct: 403 IQLRGIDFDTMLESYLLDSASNQHSLDSAALKHLDHKTIRFEEIAGKGAKQKTFNQINLQ 462

Query: 537 QVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +A E++ + L+L   L+P+L  V  L  VY  ++ P++ V+++ME  G+ ID  LL
Sbjct: 463 DAGPYAAEDAAIALRLHETLKPQLDNVVGLSTVYTEIEMPLVTVLARMERHGVLIDAPLL 522

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K+ S  I+K LL+LE+  + L+G+ FNL SPKQL  ILF     P   KT  GQ  +T++
Sbjct: 523 KKQSRSIAKRLLTLEQQAFQLAGKPFNLGSPKQLQTILFDDHGLPILEKTPKGQ-ASTSE 581

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           ++ Q      P+ K IL+ R+LSK+KSTY D LP  IN +T RVHT Y  A+ +TGRL+S
Sbjct: 582 NVLQALALTFPLPKIILKHRRLSKLKSTYTDKLPEQINPKTGRVHTSYHQAAVVTGRLSS 641

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP +T  G+KIR+AFI+PP   +++ADYSQIELRI+AH ++   L + F   L
Sbjct: 642 SDPNLQNIPARTHEGRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGLLKAFAQGL 701

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH+  AAE+  + +E+V+ + RR AK INF ++YG+S F LA QL I R +A +YI+RY
Sbjct: 702 DIHQATAAEVLNIPLERVTHEQRRSAKAINFGLMYGMSAFGLARQLGISREDAKNYIERY 761

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+  Y+E+ +    +  YV T+FGRR++   INS  S  R  +ERAAINAP+QGS
Sbjct: 762 FDRYPGVKRYMERIRQRAHEQRYVTTLFGRRLNLAFINSNDSLQRRASERAAINAPLQGS 821

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI ++AMI +   L   KL   M++Q+HDELVFE+ E ++  A ++I    E   +  
Sbjct: 822 AADIIKKAMIRIDAELIKKKLDAHMIMQVHDELVFEIAEHDLQRAKRLI----ENLMVHT 877

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL V+I++ +NW +
Sbjct: 878 TTLSVPLVVDIQIGSNWNK 896



 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 160/276 (57%), Gaps = 8/276 (2%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
             LVDG+S++YRAF+A  PL++ K  G P  AI G  +ML KL+    KE+   +  V+F
Sbjct: 5   FILVDGTSYLYRAFHALPPLMNSK--GEPTGAIYGVISMLRKLM----KENDPEYIVVVF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR  +Y +YKA+RP +P+ L  Q+  +    +  G+P +   G EADD+I T  
Sbjct: 59  DAKGKTFREALYSEYKAHRPLMPDDLQVQIEPLYALIRGLGLPLVIHSGVEADDVIGTLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A +    V I + DKD  QLV     L +T+   ++D + VI K+G+ PE++    +L
Sbjct: 119 TKALQHLRPVLISTGDKDFAQLVCEEITLVNTMTNTRLDRQGVIDKFGVAPEQITDYLSL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD +DN+PG+P +G KTAA  L  YGNLE+++ NAS IK  K  +N+    +   LSR+
Sbjct: 179 IGDPVDNVPGVPNVGPKTAAKWLNHYGNLESLIKNASAIK-GKVGDNLRASRDKLLLSRQ 237

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           LV ++TDV ++  LE    +  +   L ++ K LEF
Sbjct: 238 LVTIKTDVDLSFDLEKFRPQAPHHSVLSAYYKKLEF 273


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/590 (40%), Positives = 360/590 (61%), Gaps = 23/590 (3%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT-KEI 449
           +F   TD+++  +++ + ++ S    K    +     +I L   T QD T +  L   E+
Sbjct: 353 AFDTETDSLEPMNARIVGLSFSV---KPGVGY-----YIPL---THQDLTAEPQLPLAEV 401

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASI 508
           L++LK +FE+    KI  N KYD  V+  + + ++G FED ML SY+L++ +  H + ++
Sbjct: 402 LAFLKPWFEDSDSPKIAQNAKYDLHVMANHDVWVKGLFEDTMLASYILEAHKP-HGMDAL 460

Query: 509 AQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEK 564
           A +WL+Y     +E+     S I  D++      ++A E++ V L+L   L+ +L  V +
Sbjct: 461 ALRWLNYNTIKYEEVAGKGASQITFDQVPIDTATKYAAEDAEVTLRLAHALKAELDKVPE 520

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +Y  ++ P   V+ ++E  G+ ID D L+  SAEI+  L  +EE  ++L+G  FNL+
Sbjct: 521 LAKLYRDVELPFGQVLFEVERNGVLIDSDKLEAQSAEIADKLKLIEEQAFELAGGSFNLN 580

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQ+G++LF KL  P   KT +G   T  + L ++   D P+   +LE R L+K+KSTY
Sbjct: 581 SPKQIGELLFDKLGLPVVKKTASGAPSTDEEVLSKL-AEDYPLPAKLLEHRSLAKLKSTY 639

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D LP  +N RT RVHT Y+ A  +TGRLAS +PNLQNIP++T  G+++R AFI+ P   
Sbjct: 640 TDKLPRMVNARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRVREAFIAAPGCV 699

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+SADYSQIELRI+AHI+    L   F   LDIH   A+EIFGV + +V+   RR AK I
Sbjct: 700 LVSADYSQIELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVI 759

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF +IYG+S F LA  L I R  A  YI RYF R+PG+ ++++  +   +++G+V+T+FG
Sbjct: 760 NFGLIYGMSAFGLAGNLGITREAAKLYIDRYFARYPGVAKFMDNVRAQAKEDGFVQTVFG 819

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR+   EI SP    R   ERAAINAP+QG++AD+ + AM+ +   L+  KL +KM++Q+
Sbjct: 820 RRLWLPEIKSPNGPRRAGAERAAINAPMQGTSADLIKMAMVELSAWLKAEKLNSKMIMQV 879

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDE++FEVP+ E+    + +   M +       LRVPL+V   V NNW+E
Sbjct: 880 HDEVIFEVPKGELELIQKRVPEIMTQVA----KLRVPLEVGCGVGNNWEE 925



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/249 (42%), Positives = 151/249 (60%), Gaps = 4/249 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH-FAVIF 65
           L LVDGSS++YRAF+A P L R   G P  AI G  NML +L  +   + I S+  A +F
Sbjct: 4   LLLVDGSSYLYRAFHAMPDL-RNRAGEPTGAIYGMVNMLRRLRADYNTDDITSNCIACVF 62

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR++IYP+YKANR  +PE L  Q+P +   T+A G P +   G EADD+I T  
Sbjct: 63  DAPGKTFRDDIYPEYKANRASMPEDLAAQIPHIHEVTRAMGWPIVMEPGIEADDVIGTLA 122

Query: 126 YIAEKEGFAVTIIST-DKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            +A ++GF   I+ST DKD+ QLV+    L DT+K   +  + V +K+G+ PE++V    
Sbjct: 123 QVALEQGFDEVIVSTGDKDMAQLVNDKVRLVDTMKNAVMTRDSVFEKFGVYPEQIVDYLT 182

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+  +G KTAA  L EY  L+ ++ NA +I   K  EN+ +  +     +
Sbjct: 183 LVGDTVDNVPGVEKVGPKTAAKWLAEYKTLDGVVANADKIG-GKVGENLQKALDWLPTGK 241

Query: 245 KLVMLRTDV 253
            LV ++TD 
Sbjct: 242 SLVTIKTDC 250


>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
 gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
          Length = 906

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/616 (38%), Positives = 358/616 (58%), Gaps = 24/616 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +++     +W++KLE     +F   T ++D   ++ I +           SF VE  
Sbjct: 308 YQAVMDPAAFDRWLEKLEAAELFAFDTETSSLDYMRAEVIGL-----------SFAVEP- 355

Query: 428 FIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                V  + D  G         +L  L+   E+    K+G ++KYD  VL  +GI +RG
Sbjct: 356 GAAAYVPLAHDYPGAPPQLDRAMVLERLRPLLEDPGKAKLGQHLKYDANVLLNHGIMLRG 415

Query: 486 FE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEH 541
              D ML SYVL+S  + HD+ S+A+++L   +   +++       IP  ++S      +
Sbjct: 416 IRHDTMLESYVLNSTATRHDMDSLAERYLDRKTLHYEDVAGKGAKQIPFARVSVEDACRY 475

Query: 542 AIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E+++V L L   L P+L  +  L  VYE ++ P++ V+S++E  G+ +D   L + S 
Sbjct: 476 AAEDADVTLCLHRALWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSR 535

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+ + +  +E     ++GE FNL SPKQ+  IL+ KL  P   KT TGQ  T    L+ +
Sbjct: 536 ELERRMAEVEAEARAVAGETFNLGSPKQIQTILYDKLGLPVIKKTPTGQPSTDESVLQDL 595

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                 + + ILE+R LSK+KSTY D LP+ +N  + RVHT Y  A   TGRL+S +PNL
Sbjct: 596 -AETFELPRLILEYRSLSKLKSTYTDKLPHQVNPVSGRVHTSYHQAVAATGRLSSSDPNL 654

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T+ G++IR+AF++PP  KL++ADYSQIELRI+AH++    L   F    D+HR 
Sbjct: 655 QNIPVRTEEGRRIRQAFVAPPGHKLLAADYSQIELRIMAHLSGDANLLAAFAEDADVHRA 714

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV +E+V+   RR AK INF +IYG+S F LA QL I +  A  YI  YF R+P
Sbjct: 715 TAAEVFGVALEEVTSSQRRSAKAINFGLIYGMSAFGLAKQLGIQQKLAQGYIDLYFARYP 774

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+++T+   R+ GYVET+FGRR+H  +I S     R   ER AINAP+QG+AADI 
Sbjct: 775 GVRAYMDRTRESARELGYVETLFGRRLHVPDIQSRNGQRRQYAERTAINAPMQGTAADII 834

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +RAMI++   +E      +M++Q+HDELVFEV E+ ++ A+  +   M +A      L V
Sbjct: 835 KRAMIALDAWIESSGAPLRMIMQVHDELVFEVAEDFVSEATATVREHMSRAA----ELAV 890

Query: 961 PLKVNIKVSNNWQEEN 976
           PL V+I   +NW E +
Sbjct: 891 PLMVDIGTGDNWDEAH 906



 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 117/287 (40%), Positives = 165/287 (57%), Gaps = 6/287 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSSF+YRAF+A P L+  H G P  A+ G  NML KLLQ        +H AV+FD
Sbjct: 10  LVLVDGSSFLYRAFFALPPLTNSH-GEPTGAVYGVINMLRKLLQTYD----GAHIAVVFD 64

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P   FR+E++  YKA+RP +P+ L  Q+  +    +A G+P +   G EADD+I T   
Sbjct: 65  APGRNFRDELFEHYKAHRPPMPDDLRSQIEPLHQVVRAMGLPMLIEPGVEADDVIGTLAR 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + GF V I + DKD+ QLV     L +T+ + ++D+  VI K+G+PPE++V   AL 
Sbjct: 125 QAVERGFRVVISTGDKDMAQLVCDRVTLENTMFDSRLDVNGVIVKFGVPPERIVDYLALV 184

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+P +G KTAA  L EYG+L+ ++  A  I  K   EN+    E   LSR+L
Sbjct: 185 GDTSDNIPGVPKVGPKTAAKWLAEYGSLDALIARAGEIGGKT-GENLRASLELIPLSREL 243

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
             +R D+P+ +  E L     +   L      LEF  L+ ++    D
Sbjct: 244 ATIRCDLPLPLTPESLERRPPDKAALRELYTRLEFKTLLRQLDAEAD 290


>gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
 gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
          Length = 907

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 311/983 (31%), Positives = 502/983 (51%), Gaps = 100/983 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  +++    + I + F V     
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFTNTLLSIIKEFSPDYIGAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           A   R+EIY +YKA R  +PE LL Q+P +      F I   +I G+EADD++ T +   
Sbjct: 61  ASLKRSEIYSEYKAQRDAVPEDLLLQIPRIEEVLDGFNINRFKIDGYEADDVMGTLSQKL 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------EHVIKKWGIPPEKMVC 181
             EG  V +++ DKDL Q++     +    K E  D        E V++  G+  + +  
Sbjct: 121 SNEGIEVIVVTGDKDLAQILDKNVKIALLGKGEGGDKFKILETDEDVVEYLGVTSKMIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
              L GDS D IPG+  IG K A  +L++YGNLE +  N  ++ +     K    N+ E 
Sbjct: 181 FFGLIGDSSDGIPGVRKIGPKKAVPMLEKYGNLEGVYENIDKLTEIPGIGKSLIINMKED 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A +SRKL  +  D+P+   ++ L     +  +L+   K LEF  L+ ++        
Sbjct: 241 KEIAFISRKLATIEKDIPLECKIDDLKY-SIDNKKLLDLFKTLEFRVLVKKMGL------ 293

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                        ++  +++E +    T+++   FS+ S Q ++       Q+       
Sbjct: 294 -------------DSPALSVEEKAPEPTSLQMGLFSTPSVQENESVEPVAKQR------- 333

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     ++T + + +  +Q+  KL     A  K +     AF       A+S+L  
Sbjct: 334 ----------NFTVVDDEEKFKQFSDKL-----AGEKRL-----AFFYSGTGFAVSSL-- 371

Query: 417 KDDTSFKVETIFIDLS----VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           KDD        +I L      H + D           L  +K+FF N   + I +N K  
Sbjct: 372 KDD-------FYIPLGHTPLFHKNLD-----------LDKVKEFFRNSDSIFITYNFK-- 411

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
              L   GI ++  +  ++++Y L S ++   +  I  + LS         +        
Sbjct: 412 --PLLNEGIKIKNMDMDLMIAYHLISSQTKEGV-EIPLEQLSGIDIAPYSEKFGKEAPGN 468

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +S  +  +  +E S  I++ + +   ++  + LL V +  + P+I V+S ME  GI+ID 
Sbjct: 469 LSTEEYGKFLVERSKGIMETYGIAMEEIKGKNLLEVLKETEMPLIKVLSAMERKGIKIDP 528

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
               +   E+   L +L++ I++++GE+FNL+SPKQL ++LF KL      KTKTG   T
Sbjct: 529 VYFAKYEKELEILLNNLQKKIFEIAGEEFNLNSPKQLAEVLFFKLNLDPVKKTKTG-LST 587

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE++      I   ILE+R+ +K+K+TY D+LP   + R  R+HT ++   T TGR
Sbjct: 588 DEEVLEKLKNDGVEIASYILEYRKYAKLKNTYVDALPKLADSR-DRLHTTFNQIGTTTGR 646

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIP+KTD G KIR+ FI+     L+  DYSQIELR+LA ++K   L   ++
Sbjct: 647 LSSSNPNLQNIPVKTDEGMKIRQGFIADNGNVLMGIDYSQIELRVLAELSKDENLIAAYK 706

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           N+ D+HR+ A +IF + + E+VS + R  AKTINFSIIYG + F L+ +L I + EA DY
Sbjct: 707 NNEDLHRVTAKKIFELEDGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGITQKEATDY 766

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF ++P + ++ +    +  +NGY ET FGRR   + I S   +I+N  ER A+N+ 
Sbjct: 767 INRYFEQYPKVKDFEKSIIAYAEKNGYTETYFGRRRIIEGILSKNKNIKNQAERMAVNSV 826

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AA+I ++ MI + K +E +K    +LLQ+HDEL+FE+ EE++      I + M  +
Sbjct: 827 IQGTAAEILKKVMIEIFKVIE-NKEDISLLLQVHDELIFEIKEEKVEEYRTTIENIMRNS 885

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
              K +  V L +N  +  NW E
Sbjct: 886 V--KFD-DVVLDINTNIGKNWAE 905


>gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
 gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
          Length = 986

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 329/1044 (31%), Positives = 532/1044 (50%), Gaps = 136/1044 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           K+  L LVDG S  +R+FYA        L+ K DG P +   GF   L  LL N +  SI
Sbjct: 5   KKPTLLLVDGHSLAFRSFYAFSKGGEGGLTTK-DGFPTSVTYGF---LKSLLDNCK--SI 58

Query: 58  ASHFAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGF 115
                 I FD    TFR++  P+YKANR   P++    L  L  +  ++  +   +  G+
Sbjct: 59  EPKGVTIAFDTAEPTFRHKEDPNYKANRDVAPDIFFQDLDQLEEILKESLNLSICKAPGY 118

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDI 165
           EADD++ T    A ++G++V I+S D+DL QLV        LY        +   + I+ 
Sbjct: 119 EADDVLGTLANDAAEKGWSVRILSGDRDLFQLVDDERDIAVLYMGGGPYAKSGSPKLINE 178

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-------- 217
           + V +K G+ P K++ L+ALTGDS DNIPG+ G+G KTA  LL E  +L+ +        
Sbjct: 179 KGVREKLGVNPNKVIDLKALTGDSSDNIPGVKGVGPKTAINLLNENLDLDGVYKSLQELE 238

Query: 218 ----------LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
                     +  A R+K K  ++N       A LS+KL  +   +PI  P  +  LE  
Sbjct: 239 KEGEKAKRGAIKGAVRLKLKADKDN-------AYLSKKLAEILIKIPID-PKVNYNLEGI 290

Query: 268 NGPRLISFLKALEFTKLINRVAT---TYDCDAA---NIEPVVLDINTTENKGIAIETEID 321
           N  +L   L+ LE   L  +V+T    +  D +   ++ P   +IN   NK         
Sbjct: 291 NESKLAENLERLELHSLSKQVSTFKAIFSKDGSSKKDLNPSSKEINIANNK--------- 341

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTP--QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQ 379
                K S+FS+L++      +++ P  +   +  L++L+ +               + Q
Sbjct: 342 ----TKNSEFSTLNE------TKEIPRIEPKIINNLEELNNF---------------VAQ 376

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS 439
            ++  +     +    T +++ F ++ + +     +   D       ++I +     +D 
Sbjct: 377 IIKHTDAKKPIAIDTETTSLNPFKAELVGLGFCFGESLKDI------VYIPIGHKNKEDD 430

Query: 440 TGK----NTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMS 493
             +    N L  +E++  L+ +F +    K   N KYD+L+L R+GI + G   D +L  
Sbjct: 431 LIEINQINQLKIEEVIFALQDWFSSNENPKTLQNAKYDRLILLRHGIILNGVVMDTLLAD 490

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           Y+ D+    H +  IA +   +  K   +I+K  +    +D  S S      +  +  + 
Sbjct: 491 YICDA-TLKHSLDEIAYREFGFKPKSFSDIVKKGEDFSYVDIKSASMYCGMDVYLTRKLA 549

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            +++  R K    KL+++ + +++P+  V++++E TGI ID   LK +S E++K L ++E
Sbjct: 550 IIYIN-RLKETSIKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKRLNTIE 608

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           + +Y+++G +FNLSSPKQLG++LF KL        KTKTG W T    LE++   D+PI+
Sbjct: 609 KEVYNIAGSEFNLSSPKQLGELLFEKLDLDRKKSRKTKTG-WSTDVAVLEKLES-DHPIV 666

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           K I+E R +SK+ +TY D+LP  I K T RVHT ++ A T TGRL+S  PNLQNIP++T+
Sbjct: 667 KIIIEHRTISKLLNTYVDALPKLIEKETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTE 726

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
             ++IR+AF+     KL+SADYSQIELRIL H++    L   +  + D+H + A  +F  
Sbjct: 727 FSRRIRKAFLPQKDWKLLSADYSQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKILF-- 784

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
             + +    RR  KTINF +IYG+   R A    +   EA  ++ ++  R+P + +++E 
Sbjct: 785 EKDAIDADERRIGKTINFGVIYGMGAQRFARSTGVSLIEAKYFLSKFKERYPAVFKFLEY 844

Query: 849 TKNFVRQNGYVETIFGRRIHY------------------DEINSPKSSIRNINERAAINA 890
            +      G+VET+ GRR ++                  D   + ++ +     RAA NA
Sbjct: 845 QERLALSQGFVETLLGRRRYFHFNKNGLGRLLGTPPNEIDLTTARRAGMEAQQLRAAANA 904

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGS+ADI + AMI +H +L +  LA K+LLQ+HDELV EV  +++     ++ ++ME 
Sbjct: 905 PIQGSSADIIKLAMIQLHSALRETGLAAKILLQVHDELVLEVNPKDLEETKLLVQNTMEN 964

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + L VPL V   V  NW E
Sbjct: 965 A----VKLSVPLIVETGVGVNWME 984


>gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 899

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 281/973 (28%), Positives = 488/973 (50%), Gaps = 96/973 (9%)

Query: 17  YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           +RAF+A P+ S     G   NA+ GF +M   L++    +   +H AV FD P  TFR +
Sbjct: 3   FRAFFALPVDSFTTSTGQATNAVHGFTSMFLSLIE----QEAPTHVAVAFDLPGGTFRTQ 58

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
            Y +YK  R + P+  + Q+ L+     A G+ ++   GFEADDI+AT    A+ E   V
Sbjct: 59  EYAEYKGTREQTPQPFIGQIELIEEVLAALGVRSVTAPGFEADDILATLAAQAQDEDMEV 118

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
            I S D+D  Q V+    +   +K      ++  + V +++G+PPE+   L AL G++ D
Sbjct: 119 LICSGDRDSFQTVTQRCTVLYPIKGVSTLRRMTPQEVTERYGVPPERYPHLAALVGETSD 178

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
           N+PG+PG+G KTAA  +  Y  LE ++ +A +IK K   +N+ ++ +    +R+L  LRT
Sbjct: 179 NLPGVPGVGPKTAAKWINLYDGLEGVIAHAEQIKGKAG-QNLRDHLDDVIRNRRLNRLRT 237

Query: 252 DVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTE 310
           D+ + I P+  L +   +   +   +++LEF  L  R                       
Sbjct: 238 DLDLGIDPVADLRMPLADRSAVARVMESLEFRTLHQRA---------------------- 275

Query: 311 NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK 370
                          ++   FS  +D   ++  E +P+++    L+ L  + +  +    
Sbjct: 276 ---------------LRVLSFSDTADHAEEVTGEGSPRQV----LEDLEVFTLGRE---- 312

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITD---TMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
            V    ++ W+ +   +G A   I  D   T+         +A+S             ++
Sbjct: 313 -VAPGQVEGWIHR--HLGDAGVTIGVDVVGTLAPGRGDAQVVAVSD---------GARSL 360

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486
            +D+++  +QD              L +   +    K+  + K     L   GI + G  
Sbjct: 361 VVDMTLLLAQDE-----------EALDQLLSDPDHPKVVADAKGSWHALRGRGIGLDGVV 409

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR-KSSIPIDKISDSQVQEHAIEN 545
            D  L +Y+    + S+D+A++A++WL    + + ++  +++  ++ ++D       + +
Sbjct: 410 ADPALAAYLCRPEQRSYDVATLAERWLGLDLESLAQAEPQTAFDLESLADGTPPRTLLAS 469

Query: 546 SN---VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           +     +L L  +L  ++     + +Y  L+ P+   ++QME  GI +D  +L     E+
Sbjct: 470 ARRAACLLPLQEVLGEQMAQRGAVTLYTELEMPVAACLAQMEDAGIAVDDSVLAAREVEL 529

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              +    E  +  +G + NLSSPKQL  ++F +LK P   +TK G + T A+ L  +  
Sbjct: 530 DARVTHAAEAAFAAAGHELNLSSPKQLQAVIFDELKMPKTRRTKRG-YTTDAEALAALYA 588

Query: 663 -GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              +P ++++LE R   K++ T  + L   +     R+HT +      TGRL+S +PNLQ
Sbjct: 589 KTGHPFLEHLLEHRDAIKLRQTV-EGLRKAVLA-DGRIHTTFQQTVAATGRLSSTDPNLQ 646

Query: 722 NIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIP +T+ G +IR AF +    + L++ADYSQIE+RI+AH++    L   F +  D+HR 
Sbjct: 647 NIPARTEEGMRIREAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRY 706

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           VAA + G+++  V+ + R H K +++ + YG+S + LA QL I  +EA+     YF RF 
Sbjct: 707 VAAMVHGIDVADVTAEQRSHVKAMSYGLAYGLSTYGLARQLGIDNAEASALRDAYFARFG 766

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            +H+Y+E      R++G+ +T+FGRR +  ++ S     R + ERAA+NAPIQGSAADI 
Sbjct: 767 AVHDYLESVVAQARRDGWTQTMFGRRRYLPDLTSDNRQRREMAERAALNAPIQGSAADIV 826

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI V  +L +  LA+++LLQIHDEL+ E+   E     +++   M  A      L V
Sbjct: 827 KKAMIDVADALAESALASRVLLQIHDELLLEIAPGEAEAVEELVRARMSGAA----QLSV 882

Query: 961 PLKVNIKVSNNWQ 973
           PL V++     W+
Sbjct: 883 PLDVSVGRGATWR 895


>gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
          Length = 913

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 317/991 (31%), Positives = 496/991 (50%), Gaps = 102/991 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L ++D   F +R+FYA P L +   G P   + GFCN    LLQ+  K+   ++ A  
Sbjct: 2   NTLSVIDTFGFFFRSFYALPPL-KNSQGFPTGLLVGFCN----LLQSLYKDPSCTYIAFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            +      R +IY +YKANR   PE L  QLP+        G   I I+G+EADD++A+ 
Sbjct: 57  LEGGGRNKRRDIYSEYKANRQAAPEELRLQLPIAIEWIAKMGFLNISIEGYEADDVVASI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             +A  +   V IIS DKDL QL+   T +YD + ++ I     ++K+G+ P+  +  Q+
Sbjct: 117 NKVANAQNITVRIISHDKDLYQLIDENTYIYDPIGKKDIKEAQCLQKYGVYPKNFIDYQS 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAETAR 241
           L GDS DN+ G+ GIG K+A  L+Q +G++E++      ++     +  + I E  + A 
Sbjct: 177 LVGDSSDNVMGVKGIGAKSAQKLIQRFGSIESLYARIDEVESATTPRIAKLIKEGKDNAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF--LKALEFTKLINRVATTYDCDAANI 299
           LS+KLV L  ++   I L   ++ + N P L  F  L+  E   +I+++ + Y+      
Sbjct: 237 LSKKLVTLYDNLLENIDLNKCLMPESN-PMLKIFDELEKYELKNIISKIQSPYE------ 289

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                 R T  K++Q    S Q +     Q+PQ +  ++ +  S
Sbjct: 290 ----------------------RYTQKKSAQMGIGSLQGT-----QSPQNIESKKDEAFS 322

Query: 360 QYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
             P   D+   +    D I Q V+         F   +D +D   ++ +  +    D K+
Sbjct: 323 FTPHLLDTLESVEFVLDSIPQGVR-------VGFDCESDGLDLQEAQLVGFSF-CFDGKN 374

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V   ++           G     +E  S + + F   H L IGHN+K+D  +++R
Sbjct: 375 AYYVPVGHRYL---------GVGNQLNLQEAKSAISRIFT--HPL-IGHNLKFDFSLIYR 422

Query: 479 -YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ-----KWLSYTRKEILKSRKSSIP-- 529
             G+   G   D M++S++ DS      IA +       KW ++T    + S  S +P  
Sbjct: 423 TLGLEHIGKIYDSMILSWLYDS------IAPVGLDKQMLKWFNHT----MISFDSVVPKG 472

Query: 530 --IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQME 584
               +++     ++A E++    +L+  L  +    +   +L + + L+ P I V+  ME
Sbjct: 473 ENFSQVNIITATQYAAEDAAATFKLYHRLEDEFHKREWGGILELAQNLEYPFIKVLMDME 532

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           + GI++D  LL+ +  + S+++  L + IYDL GE FNL+SP+QL  ILF  L    G  
Sbjct: 533 LEGIRVDIGLLEILKDKSSEHIAELSQKIYDLCGETFNLNSPQQLAHILFENLGLKPGRS 592

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFY 703
            K G   T  + L  I    +P+I  IL++R+ +K+KSTY + L        T R+HT +
Sbjct: 593 VKGG-LSTDEKTLLAI-IDSHPVIDLILDYRESNKLKSTYIEPLLRLGRTNETHRIHTSF 650

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
               T TGRL+S  PNLQNIP++ + G+KIR+AFIS     LIS DYSQIELR+LAH  K
Sbjct: 651 LQNGTATGRLSSKSPNLQNIPVRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCK 710

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + F    DIH   AA +FG   E+ + Q R  AK+INF +IYG+   +L+  L+I
Sbjct: 711 DPSLVESFMQDKDIHFETAARLFG---EQEAMQKRFIAKSINFGLIYGMGSKKLSQTLQI 767

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           P  +A +YI+ YF  FP I +++   + F+ +NGY +T+ G R ++D   +      N  
Sbjct: 768 PLKQAKEYIESYFALFPTIKDFLNAQEEFLLENGYSQTLLGHRRYFDFKRATDFMKANF- 826

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
            R  IN+  QGSAAD+ + +M  +HK      L  KMLLQ+HDEL+FE P E     ++ 
Sbjct: 827 LREGINSIFQGSAADLIKLSMCEIHKRYAKSDL--KMLLQVHDELIFEAPSERAENYAKE 884

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   M         L VPLK  I +  NW E
Sbjct: 885 VADIMNSI----YKLEVPLKCGIAIGTNWAE 911


>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
 gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
          Length = 910

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/615 (39%), Positives = 371/615 (60%), Gaps = 25/615 (4%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I+   D+ +W +KL+     SF   T+++D   ++ + ++ +      D ++     
Sbjct: 311 YDTILTDADLTRWFEKLQQAELFSFDTETNSLDYIQAQVVGLSFAV--APGDAAY----- 363

Query: 428 FIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                +  + D  G    L +E  L+ LK   E+   LK+G ++K+D+ VL  +GI ++G
Sbjct: 364 -----LPLAHDYLGAPEQLDREQTLAKLKPLLEDPTRLKVGQHLKFDRNVLRNHGIHLQG 418

Query: 486 FE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEH 541
              D ML SYVL+S  S H++  +A+K+L+YT +   ++       +  +++   +   +
Sbjct: 419 IAFDTMLESYVLNSTASRHNMDDLAKKYLNYTTQTFEDVAGKGVKQLTFNQVELEKAAFY 478

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ L+L   L P++  E  L  +   ++ P+ +V+S ME TG  ID  LL+  S 
Sbjct: 479 AAEDADITLRLHQTLWPQVEKEPALKSLLLEMELPLAEVLSDMERTGALIDPFLLQNQSQ 538

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +I   L  LE   ++++G  FNL SPKQLG++LF KL+ P   KT  G   +TA+++ Q 
Sbjct: 539 QIEVRLAELESQAHEIAGGPFNLGSPKQLGEVLFEKLQLPVIKKTPKGA-PSTAEEVLQE 597

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K +LE R LSK+KSTY D LP  I   T RVHT Y  A T TGRL+S +PNL
Sbjct: 598 LAYDYPLPKLLLEHRSLSKLKSTYTDKLPLMIAPSTGRVHTSYHQAVTATGRLSSSDPNL 657

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T+ G++IR+AF++    K+++ADYSQIELRI+AH+++   L Q F +  DIHR 
Sbjct: 658 QNIPVRTEEGRRIRQAFVADHGYKIVAADYSQIELRIMAHLSEDDGLLQAFAHGQDIHRA 717

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAEI  +  E V+ + RR+AK INF +IYG+S F LA QL IPR EA  Y+ RYF R+P
Sbjct: 718 TAAEIMNITPEAVTSEQRRNAKAINFGLIYGMSAFGLAKQLGIPRGEAQRYMDRYFERYP 777

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+E+T+    Q GYVET+FGRR++  +I +    +R   ERAAINAP+QG+AADI 
Sbjct: 778 GVLTYMERTREQAEQAGYVETLFGRRLYLPDIKAKNMGLRKAAERAAINAPMQGTAADII 837

Query: 901 RRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
           +RAMI +   ++     T +M++Q+HDELVFEV E+++     +I   M  A     +L+
Sbjct: 838 KRAMIKLADWIKTCDNGTIRMVMQVHDELVFEVREDKLDAYVPVIRQYMMDAA----SLK 893

Query: 960 VPLKVNIKVSNNWQE 974
           VPL V I V +NW +
Sbjct: 894 VPLDVGIGVGDNWDQ 908



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 11/302 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDGSS++YRAF+A+     R  +G P  AI    NML  LL    K+   S  AV+F
Sbjct: 7   LILVDGSSYLYRAFFASQQADLRTSNGEPTGAIRVVTNMLRSLL----KQYPDSVVAVVF 62

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FRN++Y +YK++RP +P+ L  Q+  +     A G+P + I G EADD+I T  
Sbjct: 63  DAKGKSFRNDLYAEYKSHRPPMPDDLRSQIEPIHQIIGAMGLPLLVIDGVEADDVIGTLA 122

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A +      I + DKD+ QLVS    L DT+K++  D + VI K+G+PPE +V   AL
Sbjct: 123 RQATESQIDTLISTGDKDMAQLVSEHVTLMDTMKDQLTDRQGVIDKFGVPPELIVDYLAL 182

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYAET 239
            GDS DNIPG+ G+G KTA  +LQ  G+++ I  +  R+ +   R          E    
Sbjct: 183 MGDSSDNIPGMAGVGDKTAVAVLQGVGSIDTIAAHPERVAELSFRGAKTFAAKFKEQEAM 242

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            RLS++L  ++TDV + + L  L   +     L++  +  EF  L+  + +  + DA  +
Sbjct: 243 VRLSQQLATIKTDVELPVSLAELRRHELQKDVLLALYRQFEFKNLVQELESASEADAEIV 302

Query: 300 EP 301
            P
Sbjct: 303 TP 304


>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
 gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
          Length = 907

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/615 (39%), Positives = 364/615 (59%), Gaps = 31/615 (5%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y KI+  + +  W+ +L           T  +D   ++ + ++ + +   +     +   
Sbjct: 310 YQKILTGEQLDAWLARLLAADLVCLDTETTGLDVMDARLVGMSFA-ITPHEAAYLPLAHR 368

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486
           +  +      D+T         L+ L+ + E+E   K+G N+KYDK +   +GI++RG  
Sbjct: 369 YPGVPDQLDLDAT---------LARLRPWLESEQHKKLGQNLKYDKHIFANHGIALRGIS 419

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           +D +L SYVL+S +S HD+ S+A + L   + + +E+       I  D++       +A 
Sbjct: 420 DDTLLESYVLESHKS-HDMDSLALRHLGVKTISYEEVAGRGAKQICFDQVDLDIATRYAA 478

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  +  L HVY  ++ P + V+  ME  G+ +D +LL   S E+
Sbjct: 479 EDADITLQLHQSLAPEITGKTGLQHVYRDIELPAMQVLFVMERNGVLLDANLLHVQSHEL 538

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              L++LE   ++ + + FNL+SPKQ+ +ILF KLK P   KT +G   T  + L+++  
Sbjct: 539 GVKLIALEARAHEAAEQPFNLNSPKQIQEILFDKLKLPVKKKTPSGAPSTDEEVLQELAL 598

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE+R ++K+KSTY D LP  +N+ T RVHT YS A  +TGRLAS +PNLQN
Sbjct: 599 -DYPLPKILLEYRGMAKLKSTYTDKLPKMVNRATGRVHTSYSQAVAVTGRLASSDPNLQN 657

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IPI++  G++IR AFI+P    +++ADYSQIELRI+AH++    L Q F  + D+HR  A
Sbjct: 658 IPIRSAEGRRIREAFIAPSGSCIVAADYSQIELRIMAHLSGDAGLLQAFAKNEDVHRATA 717

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AEIF      V+ + RR+AK INF +IYG+S F LA QL I R  A  YI RYF R+PG+
Sbjct: 718 AEIFMTTPVDVTTEQRRYAKVINFGLIYGMSAFGLAKQLGIERGAAQAYIARYFARYPGV 777

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y++ T+   +Q GYVET+FGRR+   EINS  +  R   ERAAINAP+QG+AAD+ + 
Sbjct: 778 RDYMDSTREQAKQQGYVETVFGRRLWLPEINSSNAMKRQGAERAAINAPMQGTAADLIKL 837

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-----N 957
           AMI V   LE  KL T++++Q+HDELV EVP++E+         S+ KA LP +     N
Sbjct: 838 AMIQVQGWLETEKLKTRLIMQVHDELVLEVPDDEL---------SLIKASLPGLMCHVAN 888

Query: 958 LRVPLKVNIKVSNNW 972
           L VPL V +    NW
Sbjct: 889 LNVPLLVEVGSGKNW 903



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/255 (40%), Positives = 149/255 (58%), Gaps = 11/255 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSSF+YRAF+A P +  +H G P NAI G  NML +L    R++  A +   +FD
Sbjct: 6   LLLVDGSSFLYRAFHAIPEMRNQH-GEPTNAIYGVHNMLRRL----RQDFPADYSLCVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YP YKANRP +P  L+ Q+  +     A G     ++G EADD+I T   
Sbjct: 61  AKGKTFRDDLYPQYKANRPSMPADLVAQIEPLHQLIAASGWKIAMVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++G    + + DKDL QLV     L +T+  E +D+  V  K+G+PPE +V   AL 
Sbjct: 121 QASRDGVRCIVATGDKDLAQLVDEHVTLINTMNNETLDMAGVKAKFGVPPELIVDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAETARLSR 244
           GD++DN+PG+  +G KTA   L ++G+L+N++ NA  I         N LE+   A   R
Sbjct: 181 GDTVDNVPGVEKVGPKTAVKWLLQHGSLDNLMRNADTISGVVGANLRNALEWLPQA---R 237

Query: 245 KLVMLRTDVPITIPL 259
           +LV ++ DVP  +PL
Sbjct: 238 QLVTVKCDVP-DLPL 251


>gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 921

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/539 (41%), Positives = 334/539 (61%), Gaps = 17/539 (3%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVL--------HRYGISMRGFE-DIMLMSYVLDSG 499
           +L  LK   E+    K+G + K+   +L           GI ++G   D +L SYVLDS 
Sbjct: 385 VLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDST 444

Query: 500 RSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            + HD  S+  K+L++T    +EI       +  D+I+  Q   +A E +++ L+L  + 
Sbjct: 445 ATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVF 504

Query: 557 RPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
             +L  +  L  V   ++ P++ V++ +E  G  +D +LL   S E+   + +LE   + 
Sbjct: 505 EARLAAIPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFA 564

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           ++GE+FNL SPKQLG IL+ KL  P  +KT TGQ  T    L ++   D P+ K ++++R
Sbjct: 565 IAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYR 624

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            +SK+KSTY D LP  IN RT R+HT Y  A  +TGRL+S +PNLQNIPI+T  G++IR+
Sbjct: 625 SMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQ 684

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF++P   KL++ADYSQIELRI+AH+A+   L   F N LD+HR  AAE+FGV +E V+ 
Sbjct: 685 AFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTT 744

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            MRR AK INF +IYG+S F LA Q+ + R ++  Y+ RYF R+PG+ +Y+E+T+    +
Sbjct: 745 DMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE 804

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            G+VETIFGRR++  +IN+   S+R   ER AINAP+QG+AADI ++AM++V+  LE+  
Sbjct: 805 QGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEESG 864

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L  +++LQ+HDELV EV E+ +   S+ I   M  A      L VPL V + V NNW E
Sbjct: 865 LDARVILQVHDELVLEVREDLVDQISEQIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/287 (36%), Positives = 154/287 (53%), Gaps = 14/287 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+FD
Sbjct: 6   LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y  LE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWI 286


>gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
 gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
          Length = 986

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 317/1025 (30%), Positives = 502/1025 (48%), Gaps = 107/1025 (10%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K DG P +   GF   L  LL N +  S     
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGTPTSVTYGF---LKALLDNCKGLS-PQGI 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
            + FD    TFR++   +YKANR   P++    L  L  +      +P     G+EADD+
Sbjct: 65  VIAFDTAEPTFRHQADVNYKANRDVAPDIFFQDLKQLQEILENNLQLPLCLAPGYEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A ++G+ V I+S D+DL QLV        LY              ID   V+ 
Sbjct: 125 LGTLANQASRDGWGVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKNSGPSLIDEAGVLS 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228
           K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL+E G+L+ I    + ++ +  K
Sbjct: 185 KLGVAPSKVVELKALTGDSSDNIPGVKGVGPKTAITLLKENGDLDGIYNALAEVEAEGEK 244

Query: 229 RRENILEYAETARLSRK-----LVMLRTDVPITIPLE---HLILEDCNGPRLISFLKALE 280
                ++ A  ++LS       L +   ++ + IPL     L L   +   L   L ALE
Sbjct: 245 ASRGAIKGALKSKLSNDRDNAYLSLHLAEILVDIPLPKAPRLELGSVDNDGLTDRLSALE 304

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
              L+ +V +            V   ++   K    E E  R  T      SS   + S 
Sbjct: 305 LNSLVRQVPS-----------FVATFSSGGFKANRHELEPSRSATSAAEPESSTETKASN 353

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL----ETIGSASFKIIT 396
            N         L  L+              I N +++Q+ V++L    + +   +    T
Sbjct: 354 DNE--------LPALEP-----------QLITNPEELQELVKRLMGCRDRLKPVAIDTET 394

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK----EILSY 452
             ++ F ++ + + +   +   D ++      I +  H        +   +     +L  
Sbjct: 395 TALNPFCAELVGLGVCWGEGLQDLAY------IPIGHHPPAALLDADAACQLPLEAVLKA 448

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           +  +  +    K   N KYD+L+L R+G+++ G   D +L  Y+ D+  + H +  +A++
Sbjct: 449 IAPWLASNDHPKALQNAKYDRLILLRHGLALEGVVMDTLLADYLRDAA-AKHGLEVMAER 507

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVY 569
               T     +          ++      +   + ++  +L + LR +L  +  +LL + 
Sbjct: 508 EFKITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLAIRLRAQLENMGAQLLPLL 567

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
           E++++P+  V++ ME TGI+ID   LK++S E+   L  LE+   + +G  FNL+SPKQL
Sbjct: 568 EQVEQPLEPVLALMEATGIRIDLPYLKELSIELGNTLEKLEQQAQEAAGVNFNLASPKQL 627

Query: 630 GDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           G++LF  L        +TKTG W T A  LE++   D+P++  +LE R LSK++STY D+
Sbjct: 628 GELLFETLGLNRKKSRRTKTG-WSTDANVLEKLEA-DHPVVPLVLEHRVLSKLRSTYVDA 685

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+     KL+S
Sbjct: 686 LPQLVESETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLLS 745

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELRIL H++    L + F N  D+H + A  +  ++ ++VS   RR  KTINF 
Sbjct: 746 ADYSQIELRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSEDERRLGKTINFG 803

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR- 866
           +IYG+   R +    + ++EA D++ RY  R+  +  ++E  +      GYVET+ GRR 
Sbjct: 804 VIYGMGAQRFSRSTGLSQAEAKDFLSRYKQRYAKVFTFLELQERLALSKGYVETLLGRRR 863

Query: 867 -IHYDEIN----------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
             H+D                   + +  +     RAA NAPIQGS+ADI + AM+ + +
Sbjct: 864 PFHFDRNGLGRLLGKDPMDIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQQ 923

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            L    L  ++LLQ+HDELV EV    +    Q+++ +MEKA    + L VPL V     
Sbjct: 924 QLTAADLPARLLLQVHDELVLEVDPTALEDVQQLVMQTMEKA----VELSVPLVVETGTG 979

Query: 970 NNWQE 974
           +NW +
Sbjct: 980 DNWMD 984


>gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium pseudotuberculosis I19]
          Length = 886

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 299/978 (30%), Positives = 486/978 (49%), Gaps = 110/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N L L+DG S  +RAFYA P  +     G   NA+ GF +ML  LL     E   SH AV
Sbjct: 6   NRLMLIDGHSMAFRAFYALPAENFSTSGGQATNAVYGFLSMLSSLL----NEEKPSHVAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR +++PDYKA R   P     Q+ L++   +  GI  +E + +EADD+IAT
Sbjct: 62  AFDVGRKTFRTDMFPDYKAQREATPPEFKGQVGLIKDVLEVLGITTLEKENYEADDVIAT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A+  GF   I++ D+D  QLV+ TT +   ++      +   E V +K+G+ P + 
Sbjct: 122 LATAAQPLGFETLIVTGDRDSFQLVNATTTVLYPMRGVSVLHRFTPEAVEEKYGLTPAQY 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD  DN+P IPG+G KTA   + EYG+L+ +L  A  +K K    ++ E  E 
Sbjct: 182 PDFAALRGDPSDNLPNIPGVGPKTATKWIVEYGSLDELLERADEVKGKAGT-SLRERLEQ 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            R++R L                                   T++I  +   Y  D   +
Sbjct: 241 VRMNRTL-----------------------------------TEMIKDLELPYSPDQLGL 265

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +PV +     E  G     E++  T ++    S++   T+   +E+  +           
Sbjct: 266 KPVQV-AGVAEKFG-----ELEFGTNLRERVMSAVGADTTTALTEERAEV---------- 309

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                       V+   ++ W+ + +  G A F     T     ++ +AIA        D
Sbjct: 310 -----------TVDQASLKDWLAQHKNQGLALFVRGRGTPATGDAEALAIA--------D 350

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V  I +DLS    QD        K +  +L+   E   +L   H  K    +L   
Sbjct: 351 KQRHV--IAVDLSDIDPQDE-------KALAQWLRS--ETPKYL---HEAKATFHMLSGR 396

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G  + G   D  + +Y+L  G+ ++D+  + Q+ L   R+      +  + +    DS  
Sbjct: 397 GFELNGVAHDTAIAAYLLRPGQRTYDLKDVYQRHLQ--RQLSGDETQGQLSLLDAPDS-- 452

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            E  I++   IL+L   L  +L       +Y  L+ P++ ++++ME  GI +D + L++ 
Sbjct: 453 -EELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEEQ 511

Query: 599 SAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
                + +   E    +++G+   NLSSPKQL  +LF  L  P   KTKTG + T A+++
Sbjct: 512 LKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTG-YSTAAKEI 570

Query: 658 EQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           E +     +P + ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+S 
Sbjct: 571 EALAVKHPDPFLDHLLAHRENQKLKTTL-EGLIKAVGS-DGRIHTTFNQTVASTGRLSST 628

Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIP++T  G++IR AF+     + L++ADYSQIE+R++AH+++   L + +    
Sbjct: 629 EPNLQNIPVRTQDGRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGE 688

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L  QL IP  EA   +  Y
Sbjct: 689 DLHNYVGSRVFEVPVDQVTPELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTSY 748

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y++      R++G+  T+FGRR +  E+ S     R   ERAA+NAPIQG+
Sbjct: 749 FERFGGVKQYLDNVVEQARKDGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQGT 808

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI V + L+   + +++LLQ+HDELV E+   E+    +I+   M+ A    
Sbjct: 809 AADIIKVAMIRVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAA---- 864

Query: 956 INLRVPLKVNIKVSNNWQ 973
           I+LRVPL+V+     NW+
Sbjct: 865 ISLRVPLEVSAGSGPNWE 882


>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
 gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
          Length = 921

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/623 (38%), Positives = 364/623 (58%), Gaps = 38/623 (6%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425
           +Y  I+    +  W+ ++     A+    T ++D   ++ + I           SF VE 
Sbjct: 324 AYDIILTWAQLDDWLARVRAAPLAAIDTETTSLDELRAEIVGI-----------SFSVEP 372

Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I L+ H   D+  +  L  E+L+ LK + E+    K+G ++KYD+ V   +GI +
Sbjct: 373 GAAAYIPLA-HDGPDTPAQLPLA-EVLARLKPWLEDPKHPKLGQHVKYDRHVFANHGIEV 430

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           RG+  D ML SYVL+     H +AS+A++    T    +++       IP  ++   +  
Sbjct: 431 RGYVHDTMLQSYVLEV-HKPHGLASLAERHTGRTGISYEDLCGKGAKQIPFSQVPVDKAA 489

Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            ++ E+S+  L +  +L P+L   EKL  +Y  L+    + + ++E  G+ ID D L   
Sbjct: 490 AYSCEDSDQTLDVHRVLWPQLEADEKLRGIYA-LEIACSETLFRIERNGVLIDADRLAAQ 548

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S  + + +L LE+  YD++G+ FNL SPKQLG+I F KL  P   KT TG   T  + LE
Sbjct: 549 SHALGQRILQLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLE 608

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D P+   +LE R LSK+K TY D L    + RT RVHT Y+ A  +TGRL+S +P
Sbjct: 609 KL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVAVTGRLSSNDP 667

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T  G+++R AF++PP + + S DYSQIELRI+AHI+    L + F   LD+H
Sbjct: 668 NLQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRAFHEGLDVH 727

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FGV + +V+ + RR+AK INF +IYG+S + LA  L I  + A +YI RYF R
Sbjct: 728 RATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKNYIDRYFQR 787

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +Y++ TK   +  GYVET+FGRR++  EINSP    R+  ERAAINAP+QG+AAD
Sbjct: 788 YPGVWQYMQDTKAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAERAAINAPMQGTAAD 847

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-- 956
           + ++AM+ V  +L+  K    M++Q+HDELVFE+PE ++         +  +A +P+I  
Sbjct: 848 LIKKAMVQVQDALDAAKPEVLMIMQVHDELVFELPEGDV---------NWLRAEVPRIMA 898

Query: 957 ---NLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  +W + +
Sbjct: 899 GVAELKVPLLAEVGVGPDWDKAH 921



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/256 (41%), Positives = 149/256 (58%), Gaps = 2/256 (0%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRAF+A P L R   G P +A  G    +  +LQ  +KE  A +
Sbjct: 1   MSDTKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPTSAATGAIRGMINMLQALKKEVHADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+ IYPDYKANR  +PE L  Q+  +    +  G P + I+G EADD+
Sbjct: 60  AACVFDASGPTFRDAIYPDYKANRAPMPEDLRAQIEPIHEVVRLLGWPVLAIEGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +G  V I S DKDL QLV     + DT+  ++ D+  V  ++G+PP  MV
Sbjct: 120 IGTLARAAAGQGMRVVISSGDKDLSQLVDEHVTIIDTMNGKRRDVAGVTAEFGVPPALMV 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GD++DN+PG+P +G KTAA  L EYG+L+ ++ +A  IK     EN+    +  
Sbjct: 180 DFQALVGDAVDNVPGVPKVGPKTAAKWLAEYGSLDALVAHAGAIKGVA-GENLRGALDWL 238

Query: 241 RLSRKLVMLRTDVPIT 256
             +R+LV ++TD  ++
Sbjct: 239 PTARELVTIKTDCDLS 254


>gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 882

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 298/975 (30%), Positives = 501/975 (51%), Gaps = 117/975 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P+ +     G   NA+ GF +ML     N+  E      AV F
Sbjct: 11  LLLIDGHSMAFRAFYALPVDNFSTSGGQHTNAVYGFLSML----SNTVAEETPDAIAVAF 66

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E++PDYKA R   PE    Q+ L+R   +  GI  +  + FEADDI+AT  
Sbjct: 67  DVGRKTFRTEMFPDYKAQREAAPEEFKGQVDLIREVLEVLGITTLSRENFEADDILATLA 126

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
              E + +   I++ D+D +QLV+ +T +   +K      +     V +K+G+ P +   
Sbjct: 127 --TEAQDYETLIVTGDRDYLQLVNESTTVLYPMKGVSTLHRFTPSAVEEKYGLTPAQYPD 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIP +G KTA   + +YG+L +++ +A  IK      N  E  E  +
Sbjct: 185 FAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEIKGVVGN-NFRERIEQVQ 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           ++RKL  + TD+ + +           GP  ++F +A      +  VA  +D        
Sbjct: 244 MNRKLTQMITDMDLEV-----------GPNDLAFKEAK-----VADVAAKFD-------- 279

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                            +++  T+++    +++ +  ++  +EQ       E++Q+L   
Sbjct: 280 -----------------DLEFGTSLRDRVLAAIPNDGAEA-AEQA------EQVQELE-- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    +++ + + QW+   E +       +    +    +  A AI+ +DQ +   
Sbjct: 314 --------TVIDDEPLSQWLPGREHVA------VYVQGEGNPGQGDASAIAFVDQ-ERHG 358

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
            +VE    DLS    +       L + + S   K+F         H  K    +L   GI
Sbjct: 359 LQVE--LGDLSAEDDK------ALAQWLASDAPKYF---------HEAKAAFHMLAGRGI 401

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L +Y+L  G+ ++ +A + Q+ L  T    L +    + +  + DS +  
Sbjct: 402 ELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKT----LGAATEQLSL--LDDSSL-- 453

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             ++ +  IL+L   L  +L       +Y  L+ P++ ++++ME TGI +D D+L+    
Sbjct: 454 --VDQAAAILELAERLSAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKD 511

Query: 601 EISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              + +   E    +L+G+ K NL+SPKQL  +LF   + P   KTKTG + T A+++EQ
Sbjct: 512 AFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTG-YSTAAKEIEQ 570

Query: 660 INCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   + +P + ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+S EP
Sbjct: 571 LAAKNPHPFLDHLLAHREYQKMKTTL-EGLIKTVQP-DGRIHTTFNQTVASTGRLSSTEP 628

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++T+ G++IR  FI      +L++ADYSQIE+R++AH++    L + ++   D+
Sbjct: 629 NLQNIPVRTEAGRQIRSVFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDL 688

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++ YF 
Sbjct: 689 HNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIMESYFE 748

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF G+ +Y+++     R++GY  T+FGRR +  E+NS     R   ERAA+NAPIQG+AA
Sbjct: 749 RFGGVKKYLDEVVVQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQGTAA 808

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V ++L+  K  +++LLQ+HDELV EV   E     +I+   M+ A    I 
Sbjct: 809 DIIKVAMIRVDRALQGMK--SRVLLQVHDELVVEVAPGEADEVREILEREMDSA----IE 862

Query: 958 LRVPLKVNIKVSNNW 972
           L VPL+V+     +W
Sbjct: 863 LNVPLEVSAGAGKDW 877


>gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328]
 gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328]
          Length = 945

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 319/989 (32%), Positives = 521/989 (52%), Gaps = 79/989 (7%)

Query: 17  YRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTF 72
           +RA+YA         R   G+P +   GF   L +++   + E +A    + FD    TF
Sbjct: 3   FRAYYAFGKSRSGGLRTSTGIPTSVCFGFLQSLLEVIDIYKPELVA----IAFDRAEPTF 58

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132
           R+E   +YKA+R + P   +  +  ++   +AF IP   + G+EADD++ T        G
Sbjct: 59  RHEADANYKADRAETPADFIQDINNLQQLLEAFRIPIFSVAGYEADDVLGTLANRGSAAG 118

Query: 133 FAVTIISTDKDLMQLVSPT---TCLY----DTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           + V I+S D+DL QL+      T L+         ++     V +K  I PE++V  +AL
Sbjct: 119 YQVKILSGDQDLFQLIDEQKQITVLHLSHGKGSSPQEFAAPQVYEKLSIKPEQVVDYKAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD  D IPG+ GIG KTA  LL EYG+L++I  + ++IK     + + +  E A  S+ 
Sbjct: 179 CGDQSDCIPGVRGIGEKTAVKLLAEYGSLDSIYESVNQIKGAIANK-LKQGQELAYHSQN 237

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE---FTKLINRVATTYDCDAANIEPV 302
           +  +  DVP+ I  E   L+  +   +I  L+ LE   F   I+++ + +         V
Sbjct: 238 MATIICDVPLDINWEDCQLQGFDSQEIIPLLQQLEFQVFIDKIHQLQSQFKG------LV 291

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            ++IN++ N  ++  TE+    + + S  ++  D     ++E T           L    
Sbjct: 292 DVEINSS-NSEVSYPTEL---DSSEDSSENNDDDDLWFFSAEDT----------ALETKA 337

Query: 363 INNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           I N  + +I+ T + +   V +L+T  +    +  DT             ++L+ +D   
Sbjct: 338 IANSIHPQIIQTPEALALLVNRLKTHTNPDKPVAWDT-----------ETTSLEPRDANL 386

Query: 422 FKVETIF----IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             +   +     DL+      + G+    +E+L  L+   E+E++ K   N K+D+L+L 
Sbjct: 387 VGIGCCWGSELSDLAYIPLNHTQGEMLNIEEVLPALRPILESENYPKTLQNAKFDRLILR 446

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK-ISD 535
             GI+++G   D ML SYV++   SSH++  ++ ++L      + +S    +P  K I+D
Sbjct: 447 SQGITLKGVVFDTMLASYVINP-ESSHNLTDLSLRYLP-DLGIVAQSYSQLVPKGKTIAD 504

Query: 536 ---SQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              + V  +   +     Q+   ++  L  V  L  +  ++++P+  +++ ME  GI+ID
Sbjct: 505 LDINTVANYCGLDVFTTFQITQKMQDILKDVPPLNDLLRQVEQPLEPILAGMEFQGIRID 564

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQ 649
            D L Q+S ++ + L SLE+  +  +GE FNL SPKQL ++LF +L+       KTKTG 
Sbjct: 565 TDYLNQLSKQLGETLESLEKASHQAAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTG- 623

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A  LE++   D+P+I  ILE+R LSK+KSTY D+LP  +   T R+HT ++ A T 
Sbjct: 624 YSTDATVLEKLK-HDHPVINYILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQAITS 682

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+T+  ++IR+AFI      L+SADYSQIELRILAH+++   L +
Sbjct: 683 TGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKMLIE 742

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            +  + D+H + A  +F  + ++++   RR  K INF +IYG+   R A ++ +  +   
Sbjct: 743 AYNTNQDVHSLTAQLLF--DKDEITADERRLGKIINFGVIYGMGSQRFAREVGVSATAGK 800

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE----R 885
            +I R+  ++PG+ EY+E  K      GYVETI GRR +++ +        N  +    R
Sbjct: 801 QFIDRFNSQYPGVFEYLESQKLAAINQGYVETILGRRRYFESLKGRDRDRLNYQDEQMLR 860

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AA NAPIQGS+ADI + AMI + + L++++   ++LLQ+HDELVFEVP  E       I 
Sbjct: 861 AAANAPIQGSSADIIKIAMIKLAEILKNYQ--ARLLLQVHDELVFEVPLSEWEELQHQIK 918

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +ME  CL    L VPL V+I    NW E
Sbjct: 919 STMEN-CL---FLSVPLVVDIHAGTNWME 943


>gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
 gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
          Length = 879

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 298/975 (30%), Positives = 504/975 (51%), Gaps = 117/975 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P+ +     G   NA+ GF +ML  ++     ++IA    V F
Sbjct: 8   LLLIDGHSMAFRAFYALPVDNFSTSGGQHTNAVYGFLSMLSNIVAEETPDAIA----VAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E++PDYKA R   PE    Q+ L+R   +  GI  +  + FEADDI+AT  
Sbjct: 64  DVGRKTFRTEMFPDYKAQREAAPEEFKGQVDLIREVLEVLGITTLSRENFEADDILATLA 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
              E + +   I++ D+D +QLV+ +T +   +K      +     V +K+G+ P +   
Sbjct: 124 --TEAQDYETLIVTGDRDYLQLVNESTTVLYPMKGVSTLHRFTPSAVEEKYGLTPAQYPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIP +G KTA   + +YG+L +++ +A  IK      N  E  E  +
Sbjct: 182 FAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEIKGVVGN-NFRERIEQVQ 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           ++RKL  + TD+ + +           GP  ++F +A      +  VA  +D        
Sbjct: 241 MNRKLTQMITDMDLEV-----------GPNDLAFKEAK-----VADVAAKFD-------- 276

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                            +++  T+++    +++ +  ++  +EQ       E++Q+L   
Sbjct: 277 -----------------DLEFGTSLRDRVLAAIPNDGAEA-AEQA------EQVQELE-- 310

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    +++ + + QW+   E +       +    +    +  A AI+ +DQ +   
Sbjct: 311 --------TVIDDEPLSQWLPGREHVA------VYVQGEGNPGQGDASAIAFVDQ-ERHG 355

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
            +VE    DLS    +       L + + S   K+F         H  K    +L   GI
Sbjct: 356 LQVE--LGDLSAEDDK------ALAQWLASDAPKYF---------HEAKAAFHMLAGRGI 398

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L +Y+L  G+ ++ +A + Q+ L  T    L +    + +  + DS +  
Sbjct: 399 ELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKT----LGAATEQLSL--LDDSSL-- 450

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             ++ +  IL+L   L  +L       +Y  L+ P++ ++++ME TGI +D D+L+    
Sbjct: 451 --VDQAAAILELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKD 508

Query: 601 EISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              + +   E    +L+G+ K NL+SPKQL  +LF   + P   KTKTG + T A+++EQ
Sbjct: 509 AFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTG-YSTAAKEIEQ 567

Query: 660 INCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   + +P + ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+S EP
Sbjct: 568 LAAKNPHPFLDHLLAHREYQKMKTTL-EGLIKTVQP-DGRIHTTFNQTVASTGRLSSTEP 625

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++T+ G++IR AFI      +L++ADYSQIE+R++AH++    L + ++   D+
Sbjct: 626 NLQNIPVRTEAGRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDL 685

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++ YF 
Sbjct: 686 HNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIMESYFE 745

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF G+ +Y+++     R++GY  T+FGRR +  E+NS     R   ERAA+NAPIQG+AA
Sbjct: 746 RFGGVKKYLDEVVVQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQGTAA 805

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V ++L+  K  +++LLQ+HDELV EV   E     +I+   M+ A    I 
Sbjct: 806 DIIKVAMIRVDRALQGMK--SRVLLQVHDELVVEVAPGEADEVREILEREMDSA----IE 859

Query: 958 LRVPLKVNIKVSNNW 972
           L VPL+V+     +W
Sbjct: 860 LNVPLEVSAGAGKDW 874


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
          Length = 921

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/617 (40%), Positives = 361/617 (58%), Gaps = 29/617 (4%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I++  +   W+++L+     +F   T ++D   ++ + +           SF VE  
Sbjct: 322 YRCILDEAEFDGWLEQLKAAPLFAFDTETTSLDYMEARIVGV-----------SFAVEA- 369

Query: 428 FIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                V    D  G      E  +L  LK   E+   LK+G N+KYD+ VL  + I ++G
Sbjct: 370 GKAAYVPFGHDYLGAPVQLSEAVVLGKLKPLLEDPTCLKVGQNLKYDRNVLLNHDIDLQG 429

Query: 486 FE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
              D ML SYVL+S  S HD+ S+A+++L     + ++I       +  ++I   Q   +
Sbjct: 430 IAYDTMLESYVLNSTASRHDMDSLAKRYLGVETTSFEDIAGKGVKQLTFNQIELEQAAPY 489

Query: 542 AIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ L+L   L  +L  V  L  V+  ++ P++ V+++ME+ G  ID  LL Q S 
Sbjct: 490 AAEDADITLRLHQTLWGQLEAVPGLAKVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQ 549

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EI   L  LE+  ++L+G++FNLSSPKQLG+ILFTKL  P   KT  G   T  + L ++
Sbjct: 550 EIELRLAELEKQAHELAGQEFNLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAEL 609

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                 + + ++E R L+K+KSTY D LP  I  +T RVHT Y  A   TGRL+S +PNL
Sbjct: 610 -AETYELPQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAATGRLSSSDPNL 668

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++ + G++IR+AFI     KL++ADYSQIELRI+AH++    L   F    DIH+ 
Sbjct: 669 QNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKA 728

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV I+ V+  MRR AK INF +IYG+S F LA QL I R+EA  Y+  YF R+P
Sbjct: 729 TAAEVFGVAIDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYP 788

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ EY+E+T+      GYVET+FGRR++  +I S  + +R   ERAAINAP+QG+AADI 
Sbjct: 789 GVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADII 848

Query: 901 RRAMISVH---KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           +RAMI+V    + +ED  +  +ML+Q+HDELVFE+ EE++     II   M  A      
Sbjct: 849 KRAMINVDSWIRGIEDESI--RMLMQVHDELVFEIREEKLEEYIAIIKEKMSAAA----E 902

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V     +NW +
Sbjct: 903 LDVPLVVEAGTGDNWDQ 919



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/260 (40%), Positives = 150/260 (57%), Gaps = 11/260 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N L LVDGSS++YRAF+A+     R   GLP  A+    NM+  L    RK+    
Sbjct: 1   MAPSNPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSL----RKQYPDC 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD    TFR++IYP+YKA R  +P+ L  Q+  +    +A G P + ++G EADD
Sbjct: 57  HVAVVFDAKGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T    A ++   V I + DKD+ QLVS    L DT+K+ K D E VI+K+G+PPE +
Sbjct: 117 VIGTLARQATEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENI 233
           +   AL GD +DNIPG+ G+G KTA  LLQ  G++++I  N  ++        K   +  
Sbjct: 177 IDYLALMGDKVDNIPGMTGVGEKTALALLQGIGSIDDIAANLDKVAALGFRGSKAFADKF 236

Query: 234 LEYAETARLSRKLVMLRTDV 253
            E  E  RLS +L  ++TDV
Sbjct: 237 REQEEQVRLSYRLATIKTDV 256


>gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A]
 gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A]
          Length = 986

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 328/1041 (31%), Positives = 532/1041 (51%), Gaps = 130/1041 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           K+  L LVDG S  +R+FYA        L+ K DG P +   GF   L  LL N +  SI
Sbjct: 5   KKPTLLLVDGHSLAFRSFYAFSKGGEGGLTTK-DGFPTSVTYGF---LKSLLDNCK--SI 58

Query: 58  ASHFAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGF 115
                 I FD    TFR++  P+YKANR   P++    L  L  +  ++  +   +  G+
Sbjct: 59  EPKGVTIAFDTAEPTFRHKEDPNYKANRDVAPDIFFQDLDQLEEILKESLNLSICKAPGY 118

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDI 165
           EADD++ T    A ++G++V I+S D+DL QLV        LY        +   + I+ 
Sbjct: 119 EADDVLGTLANDAAEKGWSVRILSGDRDLFQLVDDERDIAVLYMGGGPYAKSGSPKLINE 178

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-------- 217
           + V +K G+ P K++ L+ALTGDS DNIPG+ G+G KTA  LL E  +L+ +        
Sbjct: 179 KGVREKLGVNPNKVIDLKALTGDSSDNIPGVKGVGPKTAINLLNENLDLDGVYKSLQELE 238

Query: 218 ----------LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
                     +  A R+K K  ++N       A LS+KL  +   +PI  P  +  LE  
Sbjct: 239 KEGEKAKRGAIKGAVRLKLKADKDN-------AYLSKKLAEILIKIPID-PKVNYNLEGI 290

Query: 268 NGPRLISFLKALEFTKLINRVAT---TYDCDAANIEPVVLDINTTENKGIAIETEIDRDT 324
           N  +L   L+ LE   L  +V+T    +  D  + +    D+N +       E  I  D 
Sbjct: 291 NESKLAENLERLELHSLSKQVSTFKAIFSKDGLSKK----DLNPSSK-----EINIANDK 341

Query: 325 TIKTSQFSSLSDQTSKINSEQTP--QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQ 382
           T K S+ S+L++      +++ P  +   ++ L++L+ +               + Q ++
Sbjct: 342 T-KNSELSTLNE------TKEIPKIEPKIIDNLEELNNF---------------VAQIMK 379

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
             ++    +    T +++ F ++ + +     +   D       ++I +     +    K
Sbjct: 380 HTDSTKPIAIDTETTSLNPFKAELVGLGFCFGESLKDI------VYIPIGHQNKEGDLIK 433

Query: 443 ----NTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
               N L  +E++  L+ +F +    K   N KYD+L+L R+GI + G   D +L  Y+ 
Sbjct: 434 INQINQLKIEEVIFALQDWFSSNENHKTLQNAKYDRLILLRHGIILNGVVIDTLLADYIF 493

Query: 497 DSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
           D+    H +  IA +   +  K   +++K  +    +D  S S      +  +  +  ++
Sbjct: 494 DA-TLKHSLDEIAYREFGFKPKSFSDVVKKGEDFSYVDIKSASMYCGMDVYLTRKLAIIY 552

Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
           +  R K    KL+++ + +++P+  V++++E TGI ID   LK +S E++K L ++E+ +
Sbjct: 553 IN-RLKETSTKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKKLNTIEKEV 611

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
           Y+++G +FNLSSPKQLG++LF KL        KTKTG W T    LE++   D+PI+K I
Sbjct: 612 YNIAGSEFNLSSPKQLGELLFEKLDLDRKKSRKTKTG-WSTDVAVLEKLES-DHPIVKMI 669

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           +E R +SK+ +TY D+LP  I K T RVHT ++ A T TGRL+S  PNLQNIP++T+  +
Sbjct: 670 IEHRTISKLLNTYVDALPKLIEKETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSR 729

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           +IR+AF+     KL+SADYSQIELRIL H++    L   +  + D+H + A  +F    +
Sbjct: 730 RIRKAFLPQKDWKLLSADYSQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKLLF--EKD 787

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            +    RR  KTINF +IYG+   R A    +   EA  ++ ++  R+P +  ++E  + 
Sbjct: 788 AIDADERRIGKTINFGVIYGMGAQRFARSTGVSLIEAKYFLSKFKERYPAVFNFLEYQER 847

Query: 852 FVRQNGYVETIFGRRIHY------------------DEINSPKSSIRNINERAAINAPIQ 893
                G+VET+ GRR ++                  D   + ++ +     RAA NAPIQ
Sbjct: 848 LALSQGFVETLLGRRRYFHFNKNGLGRLLGTPPNEIDLTTARRAGMEAQQLRAAANAPIQ 907

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GS+ADI + AMI +H +L +  LA K+LLQ+HDELV EV  +++     ++ ++ME A  
Sbjct: 908 GSSADIIKLAMIQLHSALRETGLAAKILLQVHDELVLEVNPKDLEETKLLVKNTMENA-- 965

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             + L VPL V   V  NW E
Sbjct: 966 --VKLSVPLIVETGVGVNWME 984


>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
 gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
          Length = 945

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 328/1021 (32%), Positives = 515/1021 (50%), Gaps = 130/1021 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIA 58
           HL L+DG S  +RA+YA    S+  DG       +P +   GF   L ++L+  + +   
Sbjct: 5   HLLLIDGHSLAFRAYYA---FSKGRDGGLRTSTGIPTSVCFGFLKSLLEILEQQQSD--- 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            H A+ FD    TFR+    +YKA R + P+  +  +  ++   +A  +P +   G+EAD
Sbjct: 59  -HVAIAFDLGEPTFRHAADENYKAGRAETPQDFITDIANLQALLRALRLPLLSQPGYEAD 117

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLV---SPTTCLY--DTVKEEKIDIE-----HV 168
           D+I T  +    +G+ V+I+S D+DL QL+        LY   T+ + K  +E      V
Sbjct: 118 DVIGTVAHCWRSQGWPVSIVSGDRDLFQLIDREGQVQVLYLGSTLGQRKQGLEAFDALKV 177

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +  G+ PE++V  +AL GD+ D IPGI GIG KTA  LL +Y  LE+I  +   I+   
Sbjct: 178 KETMGVWPEQIVDYKALCGDASDRIPGIKGIGPKTAVQLLSQYPTLEDIYAHIHEIRPPS 237

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            R  ++     AR SR L  +  DVP+ +PLE L L   + P L   L  LEF  L  ++
Sbjct: 238 LRTKLINGEADARHSRTLAQIVHDVPLELPLEELHLSPFDWPTLDHLLDQLEFRALRLQL 297

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE--QT 346
              +                    GI  + E D + T     F + +D    +N +  +T
Sbjct: 298 QDWH----------------LRLGGILPDLETDSEET----WFFAPTDTPPPLNVQLIET 337

Query: 347 PQKL--FLERLQKL--SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           P++L   + +L+    + +P+  D+ T  +N +D       L  +G             +
Sbjct: 338 PEQLQWLMSQLETCTDANHPVAWDTETTALNPRDA-----ALVGLGCC-----------W 381

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
            + P  +A   L  K+                      G+N   +E L+ L+   E + +
Sbjct: 382 GAAPDQVAYLPLGHKE----------------------GQNLPLEETLAALRPILEGDRY 419

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
            K+  N K+D+LVL   GI +RG   D ML SYV++   +SH++  + Q++L    +   
Sbjct: 420 PKVLQNAKFDRLVLRFQGIQLRGVVFDTMLASYVINP-EASHNLKDLCQRYLPLQAQSYR 478

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL---IVEKLLHVYERLDKPMID 578
                   +  +S + V ++      + +    LL+ KL   +  +L  +   ++ P+  
Sbjct: 479 TLVGKDQTLADLSPATVAQYC----GLDVHTTYLLKEKLEADLTPRLRQLLLEVELPLEP 534

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           ++++ME TGI+ID D L+Q+S E+ + L +L++  +D  G+ FNL+SPKQL ++LF  L 
Sbjct: 535 ILAEMEATGIRIDSDYLRQLSQELEQQLAALQQQAWDAVGQPFNLASPKQLSELLFGTLG 594

Query: 639 FPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
             +    KTK G + T A  LE++  GD+P+I  IL  R L+K+KSTY D LP  +   T
Sbjct: 595 LDTKKTHKTKLG-YSTDAATLEKLR-GDHPVIDLILSHRTLAKLKSTYVDVLPTLVRPDT 652

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IRRAFI      L++ADYSQIELR
Sbjct: 653 GRVHTEFNQAVTATGRLSSSSPNLQNIPIRTEFSRQIRRAFIPEAGWLLVAADYSQIELR 712

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH+++   L   ++   D+HR+ A   F +    +S   RR  K INF +IYG+ P R
Sbjct: 713 ILAHLSQEPALLAAYQEGADVHRLTAQ--FLLEKTDISSSERRLGKMINFGVIYGMGPQR 770

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY------- 869
            A +  +  +EA  +I+R+++R+P + +Y+ + +      GYVETI GRR ++       
Sbjct: 771 FAREAGVSVAEAKVFIQRFYNRYPRVFDYLRQMERLALSQGYVETILGRRRYFAFESREL 830

Query: 870 -----------DEINSPKSSIRNINE---RAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                       +++  K  + N      RAA NAPIQGS+ADI + AM+ +   L   K
Sbjct: 831 QSLRGKPLDVLADVDPSKLKMSNYERGLLRAAANAPIQGSSADIIKCAMVKLAPLLPPEK 890

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              ++LLQ+HDELV E+  E        I   M  A    + L VPL V+I  + NW E 
Sbjct: 891 --ARLLLQVHDELVLEMTPEAWEHLQTTIPEVMSTA----VPLSVPLAVDIYAAANWLEA 944

Query: 976 N 976
           N
Sbjct: 945 N 945


>gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
 gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
          Length = 886

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 299/979 (30%), Positives = 488/979 (49%), Gaps = 112/979 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N L L+DG S  +RAFYA P  +     G   NA+ GF +ML  LL     E   SH AV
Sbjct: 6   NRLMLIDGHSMAFRAFYALPAENFSTSGGQATNAVYGFLSMLSSLL----NEEKPSHVAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR +++PDYKA R   P     Q+ L++   +  GI  +E + +EADD+IAT
Sbjct: 62  AFDVGRKTFRTDMFPDYKAQREATPPEFKGQVGLIKDVLEVLGITTLEKENYEADDVIAT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A+  GF   I++ D+D  QLV+ TT +   ++      +   E V +K+G+ P + 
Sbjct: 122 LATAAQPLGFETLIVTGDRDSFQLVNATTTVLYPMRGVSVLHRFTPEAVEEKYGLTPAQY 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD  DN+P IPG+G KTA   + EYG+L+ +L  A  +K K    ++ E  E 
Sbjct: 182 PDFAALRGDPSDNLPNIPGVGPKTATKWIVEYGSLDELLERADEVKGKAGT-SLRERLEQ 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            R++R L                                   T++I  +   Y  D   +
Sbjct: 241 VRMNRTL-----------------------------------TEMIKDLELPYSPDQLGL 265

Query: 300 EPVVLDINTTENKGIAIE-TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           +PV +        G+A +  E++  T ++    S++   T+   +E+  +          
Sbjct: 266 KPVQV-------AGVAEKFDELEFGTNLRERVMSAVGADTTTALTEERAEV--------- 309

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                        V+   ++ W+ + +  G A F     T     ++ +AIA        
Sbjct: 310 ------------TVDQASLKDWLAQHKNQGLALFVRGRGTPATGDAEALAIA-------- 349

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
           D    V  I +DLS    QD        K +  +L+   E   +L   H  K    +L  
Sbjct: 350 DKQRHV--IAVDLSDIDPQDE-------KALAQWLRS--ETPKYL---HEAKATFHMLSG 395

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G  + G   D  + +Y+L  G+ ++D+  + Q+ L   R+      +  + +    DS 
Sbjct: 396 RGFELNGVAHDTAIAAYLLRPGQRTYDLKDVYQRHLQ--RQLSGDETQGQLSLLDAPDS- 452

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E  I++   IL+L   L  +L       +Y  L+ P++ ++++ME  GI +D + L++
Sbjct: 453 --EELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEE 510

Query: 598 VSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
                 + +   E    +++G+   NLSSPKQL  +LF  L  P   KTKTG + T A++
Sbjct: 511 QLKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTG-YSTAAKE 569

Query: 657 LEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           +E +     +P + ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+S
Sbjct: 570 IEALAVKHPDPFLDHLLAHRENQKLKTTL-EGLIKAVGS-DGRIHTTFNQTVASTGRLSS 627

Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIP++T  G++IR AF+     + L++ADYSQIE+R++AH+++   L + +   
Sbjct: 628 TEPNLQNIPVRTQDGRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQG 687

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L  QL IP  EA   +  
Sbjct: 688 EDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTS 747

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y++      R++G+  T+FGRR +  E+ S     R   ERAA+NAPIQG
Sbjct: 748 YFERFGGVKQYLDNVVEQARKDGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQG 807

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI V + L+   + +++LLQ+HDELV E+   E+    +I+   M+ A   
Sbjct: 808 TAADIIKVAMIRVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAA--- 864

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            I+LRVPL+V+     NW+
Sbjct: 865 -ISLRVPLEVSAGSGPNWE 882


>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
 gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
          Length = 921

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/623 (38%), Positives = 363/623 (58%), Gaps = 38/623 (6%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425
           +Y  I+    +  W+ ++     A+    T ++D   ++ + I           SF VE 
Sbjct: 324 AYDIILTWAQLDDWLARVRAAPLAAIDTETTSLDELRAEIVGI-----------SFSVEP 372

Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I L+ H   D+  +  L  E+L+ LK + E+    K+G ++KYD+ V   +GI +
Sbjct: 373 GAAAYIPLA-HDGPDTPAQLPLA-EVLARLKPWLEDPKHPKLGQHVKYDRHVFANHGIEV 430

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           RG+  D ML SYVL+     H +AS+A++    T    +++       IP  ++   +  
Sbjct: 431 RGYVHDTMLQSYVLEV-HKPHGLASLAERHTGRTGISYEDLCGKGAKQIPFSQVPVDKAA 489

Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            ++ E+S+  L +  +L P+L   EKL  +Y  L+    + + ++E  G+ ID D L   
Sbjct: 490 AYSCEDSDQTLDVHRVLWPQLEADEKLRGIYA-LEIACSETLFRIERNGVLIDADRLAAQ 548

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S  + + +L LE+  YD++G+ FNL SPKQLG+I F KL  P   KT TG   T  + LE
Sbjct: 549 SHALGQRILQLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLE 608

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D P+   +LE R LSK+K TY D L    + RT RVHT Y+ A  +TGRL+S +P
Sbjct: 609 KL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVAVTGRLSSNDP 667

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T  G+++R AF++PP + + S DYSQIELRI+AHI+    L + F   LD+H
Sbjct: 668 NLQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRAFHEGLDVH 727

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FGV + +V+ + RR+AK INF +IYG+S + LA  L I  + A +YI RYF R
Sbjct: 728 RATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKNYIDRYFQR 787

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +Y++ TK   +  GYVET+FGRR++  EINSP    R+  ERAAINAP+QG+AAD
Sbjct: 788 YPGVWQYMQDTKAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAERAAINAPMQGTAAD 847

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-- 956
           + ++AM+ V  +L+  K    M++Q+HDELVFE+PE ++            +A +P+I  
Sbjct: 848 LIKKAMVQVQDALDAAKPEVLMIMQVHDELVFELPEGDV---------DWLRAEVPRIMA 898

Query: 957 ---NLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  +W + +
Sbjct: 899 GVAELKVPLLAEVGVGPDWDKAH 921



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/250 (41%), Positives = 149/250 (59%), Gaps = 2/250 (0%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P +A  G    +  +LQ  +KE  A + A +FD
Sbjct: 7   LVLVDGSSYLYRAFHAMPDL-RAVPGDPTSAATGAIRGMINMLQALKKEVHADYAACVFD 65

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ IYPDYKANR  +PE L  Q+  +    +  G P + I+G EADD+I T   
Sbjct: 66  ASGPTFRDAIYPDYKANRAPMPEDLRAQIEPIHEVVRLLGWPVLAIKGVEADDVIGTLAR 125

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G  V I S DKDL QLV     + DT+  ++ D+  V+ ++G+PP  MV  QAL 
Sbjct: 126 AAAGQGMRVVISSGDKDLSQLVDEHVTIIDTMNGKRRDVAGVMAEFGVPPALMVDFQALV 185

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+P +G KTAA  L EYG+L+ ++ +A  IK     EN+    +    +R+L
Sbjct: 186 GDAVDNVPGVPKVGPKTAAKWLAEYGSLDALVAHAGAIKGVA-GENLRGALDWLPTAREL 244

Query: 247 VMLRTDVPIT 256
           V ++TD  ++
Sbjct: 245 VTIKTDCDLS 254


>gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
 gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
          Length = 948

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 291/998 (29%), Positives = 487/998 (48%), Gaps = 100/998 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++     +    H AV F
Sbjct: 16  LLVVDGHSLAFRAFFALPVENFSTSSGQATNAVWGFATMLSQVIDAEHPD----HLAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRN++ P YK  R   PE LL QLPL++    A G+  IE  G+E DD+I T  
Sbjct: 72  DVKGGTFRNQMLPQYKGTRDAAPEELLSQLPLIQQMLTALGVTYIEKPGYEGDDVIGTLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + ++ G+   ++S D+D  QL++   T LY        D++H     V +K+ + P + 
Sbjct: 132 SMGDQAGYRTLVLSGDRDAFQLINDDITVLYP--GHHFKDLKHMTPDAVQEKYHVSPAQY 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236
             L AL G++ DNIPG+PG+G   AA  + +YG LE I+ +A  I  KK    RENI   
Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEQIIEHADEISGKKGEALRENI--- 246

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCD 295
            E  +L+R +  L  D+ + + +  L     +  +L      LEF  +  NRV  T++ D
Sbjct: 247 -EQVKLNRSVNALVRDLDLGVSVSDLTFGQVDAGQLDDLFTKLEFGVRTKNRVLKTFNAD 305

Query: 296 --------AANIE-PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
                   ++ +E P V D+N        +ET +     +         +++S       
Sbjct: 306 KPSGDVHESSKLELPHVEDVNDPH----VVETWVQNHFPVVQEHLHERHERSSN------ 355

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
                      + ++    DS T+  + K  Q W    E         ++  M A H + 
Sbjct: 356 ----------DIPEFGFEIDSSTRCTD-KVKQSWTLYAEGTSKPGEASLSALMIAVHGEA 404

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           I I                                 +  + +++  L++ F+  H   + 
Sbjct: 405 IRI---------------------------------DVFSPDMVQCLQRLFDRYHHSMVV 431

Query: 467 HNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSR 524
           H  K    +L   G+ +     D  L  Y+      +  +  +A  +L  +   +   + 
Sbjct: 432 HGYKEHAHLLGSIGVELPEPLFDTKLAGYLAHPDFHADTLEQVAAHFLDLHIEAQAEAAT 491

Query: 525 KSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           + ++  D+   +DS+  E  +  + ++  L   L   L   +   + + ++ P+  V+  
Sbjct: 492 QGTLDFDEPEENDSKNDELILTRTAIVGLLAEYLAGVLDKREQFGLLKSIELPVSQVLHG 551

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G Q+D   L Q+  +++ +    +E  +  +GE+ NL SPKQL  ILF  +     
Sbjct: 552 MEQVGAQVDMARLVQMRDQLAADAAQAQETAWQFAGEQVNLQSPKQLQKILFEDMGLKPT 611

Query: 643 AKTKTGQWKTTAQDLEQIN--CGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRT 696
            KTK+G + T A  L+ +     DN      +  +L  R+ +K+K     +L +  N+  
Sbjct: 612 KKTKSGSYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLKQI-VQTLIDATNRHD 670

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIEL 755
            R+HT +      TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+EL
Sbjct: 671 GRIHTTFEQTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVEL 730

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+A ++    L + F +  D H+ VA+ ++G+ ++ ++   R H K +++ + YG+S +
Sbjct: 731 RIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITSDQRSHVKAMSYGLAYGLSTY 790

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA QL+I   EA     +YF  F  +HEY+E   +  R+ GY ETIFGRR ++  + SP
Sbjct: 791 GLAQQLKIKPKEAESLKNQYFATFGKVHEYLESLVSSAREKGYTETIFGRRRYFPGLKSP 850

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             ++R+  ERAA+NAPIQGSAADI + AMI  + +L++  L ++++LQIHDELV E+   
Sbjct: 851 NRAVRDAAERAALNAPIQGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPG 910

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           E   A+ ++  +ME A    + + VPL V+  + ++WQ
Sbjct: 911 EEKQATALVKDAMEHA----VTMAVPLDVSTGIGSDWQ 944


>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
          Length = 917

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/612 (40%), Positives = 359/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I        W  K++     +F   T ++D   ++ + ++ S    K          
Sbjct: 320 YDTIQTWAQFDAWFAKIDAAALTAFDTETTSLDPMTARLVGLSFSVEPGK--------AA 371

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ ++ H   D   +  L  E+L+ LK + E+    K+G ++KYD  VL  YGI + G E
Sbjct: 372 YLPVA-HRGPDLPEQLPL-DEVLARLKPWLESADRKKVGQHLKYDAQVLANYGIELSGIE 429

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++ +Q  E+A 
Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 488

Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID   L+  S EI
Sbjct: 489 EDADITLQLHHALYPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDARLQAQSTEI 548

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 549 ATRLVELEAQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASNDPNLQN 667

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F N  DIHR  A
Sbjct: 668 IPVRTAEGRRIREAFIASPGHQIVSADYSQIELRIMAHISGDASLLRAFSNGEDIHRATA 727

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 728 AEVFGVTPLEVTADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 787

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 788 AQYMEDTRAIAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L    LA++M++Q+HDELV EVPE E+    + +   M         L+VPL
Sbjct: 848 SMIAVDDWLTRDGLASRMIMQVHDELVLEVPEAELPRVREKLPEMMCGVA----KLKVPL 903

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 904 VAEVGAGANWEE 915



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 151/256 (58%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 127 EAERHGMKVVVSTGDKDLAQLVTDRVTLVNTMTNEILDRDGVIAKFGVPPERIIDYLALI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRKL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +   LE +
Sbjct: 246 VTVETACDLAPHLESI 261


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/542 (43%), Positives = 341/542 (62%), Gaps = 23/542 (4%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGR 500
           K   TK ++   + FFENE   K+G N+KYD  VL  YG+ ++G   D M+  Y+L+   
Sbjct: 395 KEAATK-LIEQFRPFFENEQIAKVGQNLKYDLKVLQNYGVEVQGALFDTMIAHYLLNPDM 453

Query: 501 SSHDIASIAQKWLSYTRKEI------LKSRKS--SIPIDKISDSQVQEHAIENSNVILQL 552
             H++  +++ +L+YT   I       K+++S  ++PID     +V+E+A+E+++V  QL
Sbjct: 454 R-HNMDILSETYLNYTPIAIESLIGKGKAQRSMRTVPID-----EVKEYAVEDADVTWQL 507

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
             + + ++       +Y  L+ P+I V++ ME  G+ +D D LK+ S  +  ++  LE  
Sbjct: 508 KNVFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLETA 567

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNI 671
           I   +GE FNL+SPKQLGDILF KLK  S  K TKTGQ+ T+ + L       + I+ +I
Sbjct: 568 IAQQAGETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPF-AAKHKIVADI 626

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           LEWRQ+ K+KSTY D+LP  +NK T RVHT Y      TGRL+S  PNLQNIPI+T  GQ
Sbjct: 627 LEWRQVQKLKSTYVDALPLEVNKSTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRGQ 686

Query: 732 KIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           ++R+AFI+  P   L+SADYSQIELRI+A +++   + + F +  DIHR  AA++F V +
Sbjct: 687 QVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIESFLHGEDIHRATAAKVFNVPL 746

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           E+V+ + R HAKT+NF IIYG+S F L+ Q  + RSE+ + I  Y+  +P +  YI +  
Sbjct: 747 EEVTREQRSHAKTVNFGIIYGVSAFGLSAQTDLSRSESKELIDTYYATYPNLRNYINRQI 806

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
            F R++GYVETI GRR +  +I+S    +R   ER A+NAPIQGSAADI + AMI +H  
Sbjct: 807 EFAREHGYVETILGRRRYLPDIHSHNQVVRGGAERNAVNAPIQGSAADIIKIAMIRIHNQ 866

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L+  KL T+MLLQ+HDELVF+VP+ E+     +I  +ME A      L VPL  ++ V N
Sbjct: 867 LQAQKLQTRMLLQVHDELVFDVPKTELELVKPLIKDAMENA----FTLAVPLVADLGVGN 922

Query: 971 NW 972
           NW
Sbjct: 923 NW 924



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 162/303 (53%), Gaps = 25/303 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + I+R +YA    P ++ K  GL  +AI GF N L+++++  + +    H AV
Sbjct: 5   LFLLDAYALIFRGYYAFIKNPRINSK--GLNTSAILGFMNSLFEVIKKEKPD----HLAV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD      R E++ DYKANR + PE +   +P +    +A  IP IE +G+EADDII T
Sbjct: 59  AFDKGGSVARTELFADYKANREETPEAIRLAIPYIHEILKALHIPIIEKEGYEADDIIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-------- 175
            +  AE + + V +++ DKD  QLVS    +Y   +    DIE     WG+         
Sbjct: 119 LSKQAEAQDYQVYMVTPDKDYAQLVSDNIFMYRPARSGN-DIE----IWGVKEVQEKFEV 173

Query: 176 --PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++    + GD++DNIPG+PG+G KTA  LL ++G++EN+L N  ++K  K RENI
Sbjct: 174 QNPLQVIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSMENLLANTDKLK-GKLRENI 232

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E   LS++L  +  DVP+T       +   +   +      LEF +L+     TY 
Sbjct: 233 ENNKEKGILSKQLATIMLDVPVTFDEADFAMSQPDFEAVGKIFDELEFRQLLQNFLKTYQ 292

Query: 294 CDA 296
            +A
Sbjct: 293 PEA 295


>gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 894

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 293/981 (29%), Positives = 485/981 (49%), Gaps = 115/981 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P  S +  +G   NA+ GF  ML  LLQ  +     +H  V F
Sbjct: 9   LLVIDGHSLAFRAFYALPAESFQNREGQHTNAVHGFIAMLINLLQKEKP----THVGVAF 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR   YP+YK  R + P     Q+PL+  A +   IP +  +  EADDI+AT  
Sbjct: 65  DISRFSFRTREYPEYKGTRGETPVEFTGQVPLLERALKTMNIPTLTKEDHEADDILATLA 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
               ++GF V ++S D+D +QLV+   T LY + +      + D E V +K+G+ PE   
Sbjct: 125 TQGREQGFRVLVVSGDRDAIQLVNDDVTLLYPSTQGVSQLTRYDAEKVFEKYGVQPEMYP 184

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL G++ DN+ G+  +G KTA   L +YG+L+ +L +   I  K   +N+    E  
Sbjct: 185 DIAALVGETSDNLIGVDKVGPKTAVKWLNQYGSLDAVLEHRDEISGKVG-DNLRAQYENV 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             +R+L  L TDV + +  + L  +  + P L    + LEF +L++RV            
Sbjct: 244 IRNRRLNRLLTDVELPLGPKDLERKPIDEPALREVFQVLEFKQLLDRVLKL--------- 294

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    E  G +  +E         +   ++  + S   +   PQ+L  E L K   
Sbjct: 295 ---------EGSGASASSE--------GTPVGAVEQEPSTAPAAPRPQQLLDEELAK--- 334

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                              W+++    G+AS   +  T++    +P+   +++       
Sbjct: 335 -------------------WIERQ---GAASPHGLGLTVETQDGRPVGFGLAS------- 365

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E + +      +  +  +  L  +               KI  + K     + R G
Sbjct: 366 --ATEAVTLPWQEGRADYAPFERWLASDAP-------------KIMSDAKLQVKAMRRAG 410

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE------ILKSRKSSIPIDKI 533
           + ++G   D+++  ++L  G +   +A++  ++L     E      + ++   + P++  
Sbjct: 411 LEVQGLAFDVLVAGWLLRPGFTDKTLAALVSRYLMEDLPEPDANQLVPETEALTAPVEAW 470

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +V EHA+               +++ E+ L V   ++ P + V+ +ME+ G+  D+ 
Sbjct: 471 YTLRV-EHALR--------------EVLDERTLGVMVDIEMPTLLVLVEMELRGVATDRA 515

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++SA++ + +  L +  +   G++ NL SPKQL ++LF +L  P     KTG + T 
Sbjct: 516 GLAELSAQLQERITDLAQRAFAEIGKEINLGSPKQLQEVLFDQLGMPKTRANKTG-FSTD 574

Query: 654 AQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           A  L  +   + +P +  +LE R  SK++     +L   I    +R+HT Y    T TGR
Sbjct: 575 AGALADLQASNPHPFLDLLLEHRDASKLRQII-QTLERGIGD-DERIHTTYVQTGTTTGR 632

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           ++S +PNLQNIP++T+ G++IR A  +    + L++ADYSQIE+RI+AH++    L + F
Sbjct: 633 ISSNDPNLQNIPVRTEEGRRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAF 692

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               D+HR V + IFGV    VS +MR   K +++ + YG+S F L+ QLRIP SEA   
Sbjct: 693 AAGEDLHRFVGSRIFGVEPADVSAEMRTKVKAMSYGLAYGLSAFGLSKQLRIPSSEAKQL 752

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF RF  + +Y+ +     R  GY ETIFGRR  + ++NSP   +R+  ERAA+NAP
Sbjct: 753 MTDYFARFGAVRDYLRQVVEEARAAGYTETIFGRRRPFPDLNSPNRVLRDNAERAALNAP 812

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   + +  +A++MLLQ+HDEL+ EV   E      I+   M  A
Sbjct: 813 IQGSAADIMKIAMIRIEADMRERDMASRMLLQVHDELILEVAAGEWDALEAIVTDRMAHA 872

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
                +LRVPL+V +   ++W
Sbjct: 873 A----DLRVPLEVQVGRGDSW 889


>gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 641

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/612 (40%), Positives = 363/612 (59%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I        W+ K++     +F   T ++D   ++ + ++ ST   K          
Sbjct: 44  YDTIQTWAQFDAWLAKIDAAELTAFDTETTSLDPMVAQLVGLSFSTEPGK--------AA 95

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ ++ H   D   +  L  ++L+ LK + E+    K+G ++KYD  VL  YGI + G E
Sbjct: 96  YLPVA-HRGPDLPEQLPL-DDVLARLKPWLESAERKKVGQHLKYDAQVLANYGIELNGIE 153

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++ +Q  E+A 
Sbjct: 154 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 212

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID   L+  S EI
Sbjct: 213 EDADITLQLHHALYPQVAREPGLQRVYREIEMPVSLVLRKMERTGVLIDDARLQAQSTEI 272

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 273 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 331

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 332 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNLQN 391

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 392 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 451

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 452 AEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 511

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 512 AQYMEDTRTVAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 571

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L   KLA++M++Q+HDELV EVP++E++   + +   M         L+VPL
Sbjct: 572 SMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 627

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 628 VAEVGAGANWEE 639


>gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
 gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
          Length = 864

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 303/967 (31%), Positives = 491/967 (50%), Gaps = 121/967 (12%)

Query: 17  YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           +RAFYA P+       G   NA+ GF +M+  L+   + +SIA    V FD    TFR E
Sbjct: 3   FRAFYALPVDKFSTSGGQHTNAVYGFMSMMAALVGEEKPDSIA----VAFDVGRKTFRTE 58

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY-TYIAEKEGFA 134
           ++P+YKA R   PE    Q+ ++R      GI  +  + FEADDI+AT  T   + + F 
Sbjct: 59  MFPEYKAQRESAPEEFKGQVTIIRDVLDKMGITTLSRENFEADDILATLATQATQMDEFD 118

Query: 135 VTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190
             I++ D+D +QLV+  TT LY      K  +   E V +K+G+ P++     AL GD+ 
Sbjct: 119 TLIVTGDRDYLQLVNDSTTVLYPMQGVSKLHRFTPEAVEEKYGLTPQQYPDYAALRGDTS 178

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLR 250
           DN+PG+P +G KTA   + +Y +L+N+L +A  IK      N+ E  E  RL+R L  + 
Sbjct: 179 DNLPGVPKVGEKTALKWILQYEDLDNLLNHAEDIKGVVGN-NLRERIEQVRLNRTLTQMI 237

Query: 251 TDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANIEPVVLDINTT 309
           TD+ + +  + L  +      +      LEF   L  RV   +     NIE         
Sbjct: 238 TDMDLEVGPQDLAFKSAETATIAQLFDELEFGVNLRERVVDAF----PNIE--------- 284

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
              G   ETE      +K S  S                       Q L Q+ + + +  
Sbjct: 285 ---GAEPETE----DAVKVSVTS-----------------------QSLKQW-LKDKTGV 313

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            +  T D +          + S  ++ DT DA H++     ++ L  +DD          
Sbjct: 314 AVFITGDGRPGQGD-----ATSISLVDDTFDAIHAE-----LADLSAEDD---------- 353

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-ED 488
                            K + ++L+   + E FL   H  K    +L   GI++ G   D
Sbjct: 354 -----------------KALAAWLES--DAEKFL---HEAKAAYHMLQGRGITLNGIAHD 391

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +Y+L  G+ ++++  + Q+ L   RK +  S +    +D           I+++  
Sbjct: 392 TALAAYLLRPGQRTYELPDVYQRHL---RKTLEASSEQLSLLDDTG-------GIDSAVA 441

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           I++L + L   L       +Y  L+ P++ ++++ME TGI ++ D L+      + ++ +
Sbjct: 442 IMELTVELTKALQEIDSYQLYAELEIPLVSILAKMEATGIAVNVDTLESQQEVFANHVAA 501

Query: 609 LEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NP 666
            E+   +L+G+   NL+SPKQL  +LF  L  P   KTKTG + T A+++EQ+     +P
Sbjct: 502 EEKAARELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTG-YSTAAKEIEQLAINHPHP 560

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            + ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+S EPNLQNIP++
Sbjct: 561 FLDHLLAHREYQKLKTTL-EGLIKTVQP-DGRIHTTFNQTVASTGRLSSTEPNLQNIPVR 618

Query: 727 TDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           T+ G+ IR AFI     + L++ADYSQIE+R++AH+++   L + ++   D+H  V + +
Sbjct: 619 TESGRTIRSAFIVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYKEGEDLHNYVGSRV 678

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F V ++KV+ ++RR  K +++ ++YG+S F L+ QL IP  EA   +  YF RF G+ +Y
Sbjct: 679 FDVPVDKVTSELRRRVKAMSYGLVYGLSAFGLSQQLSIPAGEAKKTMDAYFDRFGGVKKY 738

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +       R++GY  T+FGRR +  E+ S     R   ERAA+NAPIQG+AADI + AMI
Sbjct: 739 LADVVEQARKDGYTATVFGRRRYLPELISDNRLARENAERAALNAPIQGTAADIIKVAMI 798

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V ++LE  K  +++LLQ+HDELV EV   E+    +I+   M+ +    I+LRVPL+V+
Sbjct: 799 RVDQALEGFK--SRVLLQVHDELVVEVAPGELNKVQEIVEREMDAS----ISLRVPLEVS 852

Query: 966 IKVSNNW 972
               +NW
Sbjct: 853 AGTGDNW 859


>gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
          Length = 894

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 296/981 (30%), Positives = 481/981 (49%), Gaps = 115/981 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P  S +  +G   NA+ GF  ML  LLQ  +     +H  V F
Sbjct: 9   LLVIDGHSLAFRAFYALPAESFQNREGQHTNAVHGFIAMLINLLQKEKP----THVGVAF 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR   YP YK  R + P     Q+PL+  A +   IP +  +  EADDI+AT  
Sbjct: 65  DISRFSFRTREYPGYKGTRGETPVEFTGQVPLLERALKTMNIPTLTKEDHEADDILATLA 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
               ++GF V ++S D+D +QLV+   T LY + +      + D E V +K+G+ P    
Sbjct: 125 TQGREQGFRVLVVSGDRDAIQLVNDDVTLLYPSTQGVSQLTRYDAEKVFEKYGVQPGMYP 184

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL G++ DN+ G+  +G KTA   L +YG+L+ +L +   I  K   +N+    E  
Sbjct: 185 DIAALVGETSDNLIGVDKVGPKTAVKWLNQYGSLDAVLEHRDEITGKVG-DNLRAQYENV 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             +R+L  L TDV + +    L  +  + P L      LEF +L++RV            
Sbjct: 244 IRNRRLNRLLTDVELPLGPADLERKPIDEPALREVFAVLEFKQLLDRVLKL--------- 294

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    E  G +  +E         +   ++  + S   +   PQ+L  E L K   
Sbjct: 295 ---------EGSGASASSE--------GTPVGAVEQEPSTAPAAPRPQQLLDEELAK--- 334

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                              W+   ET  +AS   +  T++    KP+   +++       
Sbjct: 335 -------------------WI---ETQSAASPHGLGLTVETQDGKPVGFGLAS------- 365

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E + +      +  +  +  L  +               K+  + K     + R G
Sbjct: 366 --ATEAVTLPWQEGRADYAPFERWLASDAP-------------KVMSDAKVQVKAMRRAG 410

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE------ILKSRKSSIPIDKI 533
           + ++G   D+++  ++L  G +   +A++  ++L     E      + ++   + P++  
Sbjct: 411 LRVQGLAFDVLVAGWLLRPGFTDKSLAALVSRYLMEDLPEPDANQLVPETEALTAPVEAW 470

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +V EHA+               +++ E+ L V   ++ P + V+ +ME+ G+  D+ 
Sbjct: 471 YTLRV-EHALR--------------EVLDERTLGVMVDIEMPTLLVLVEMELRGVATDRA 515

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++SA++ + +  L E  +   G++ NL SPKQL ++LF +L  P     KTG + T 
Sbjct: 516 GLAELSAQLQERITGLAERAFAEIGKEINLGSPKQLQEVLFDQLGMPKTRANKTG-FSTD 574

Query: 654 AQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           A  L  +   + +P +  +LE R  SK++     +L   I    +R+HT Y    T TGR
Sbjct: 575 AGALADLQASNPHPFLDLLLEHRDASKLRQII-QTLERGIGD-DERIHTTYVQTGTTTGR 632

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           ++S +PNLQNIP++T+ G++IR A  +    + L++ADYSQIE+RI+AH++    L + F
Sbjct: 633 ISSNDPNLQNIPVRTEEGRRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAF 692

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           E   D+HR V + IFGV    VSP MR   K +++ + YG+S F L+ QLRIP SEA   
Sbjct: 693 EVGEDLHRFVGSSIFGVEPADVSPAMRTKVKAMSYGLAYGLSAFGLSKQLRIPSSEAKQL 752

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF RF  + +Y+ +     R  GY ETIFGRR  + ++NSP   +R+  ERAA+NAP
Sbjct: 753 MTDYFARFGAVRDYLRQVVEEARAAGYTETIFGRRRPFPDLNSPNRVLRDNAERAALNAP 812

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   + +  +A++MLLQ+HDEL+ EV   E      I+   M  A
Sbjct: 813 IQGSAADIMKIAMIRIEADMRERDMASRMLLQVHDELILEVAPGEWDALQAIVTDRMAHA 872

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
                +LRVPL+V +   ++W
Sbjct: 873 A----DLRVPLEVQVGRGDSW 889


>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
 gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
          Length = 917

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/612 (39%), Positives = 359/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I        W  K++     +F   T ++D   ++ + ++ S    K          
Sbjct: 320 YETIQTWAQFDAWFAKIDAAALTAFDTETTSLDPMTARLVGLSFSVEPGK--------AA 371

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ ++ H   D   +  L  ++L+ LK + E     K+G ++KYD  VL  Y I++ G E
Sbjct: 372 YLPVA-HRGPDLPEQLPL-DDVLARLKPWLEAADRKKVGQHLKYDAQVLANYDIALNGIE 429

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++  Q   +A 
Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALDQAAAYAA 488

Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL  +L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  LL   S EI
Sbjct: 489 EDADITLQLHHVLYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDALLHAQSNEI 548

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS EPNLQN
Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNEPNLQN 667

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F +  DIHR  A
Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAHGEDIHRATA 727

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 787

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 788 AQYMEDTRAAAKDQGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L   +LA++M++Q+HDELV EVP++E++   + +   M         L+VPL
Sbjct: 848 SMIAVDDWLTRDRLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 903

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 904 VAEVGAGANWEE 915



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 151/256 (58%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 127 EAEQRGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRKL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +   LE +
Sbjct: 246 VTVDTACDLAPHLESI 261


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 305/983 (31%), Positives = 499/983 (50%), Gaps = 118/983 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA P L R   G P   + GF N ++ +    + E    +     D
Sbjct: 4   LTIIDTFGFFFRNYYALPQL-RNSQGFPTGLLTGFANFIYAI----KNEHDTDYVMFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+E+ P+YKANRP+ PE L  QLP+     +  G      +GFEADD+IA+   
Sbjct: 59  SKGKNFRHELDPNYKANRPEAPEELKKQLPVAISWIEKMGFKCYSEEGFEADDVIASAVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            A++ G  V I++ DKDL QL+      +YD +K+ +ID E   +K+G+ P+K+    +L
Sbjct: 119 FAKRHGIKVRIVTHDKDLYQLIDDGRVVIYDPMKKIEIDSEKCFEKFGVYPDKINEYLSL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD+ DNIPG+ GIG K A  LL ++G++ENI  N  RI   + +  + E  E+A LS++
Sbjct: 179 VGDTADNIPGVKGIGPKGAKKLLDDFGSVENIYANLERIANPRSKSMLEEGRESAFLSKQ 238

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L   + I    E                            A  + CD     P+V  
Sbjct: 239 LVRLDDSLNIADTFE----------------------------AFYFPCD----NPLV-- 264

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ-KLSQYPIN 364
                                      +++D+  K        ++  E L  K+ + P N
Sbjct: 265 ---------------------------NIADELEKYELRHMLSRVRNEALHVKIKEAPSN 297

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                 + + K +   ++ +E     +F   T+ +DA+++K +  + +  +         
Sbjct: 298 TFRAILVDDAKILFNVIEGIEEGSWVAFDTETNALDAYNAKIVGFSFALNEH-------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISM 483
           E  ++ L+ H      G+    +E    LKK F+++    +G N+KYD  V+ + +G+ +
Sbjct: 350 EAYYVPLAHHYL--GVGEQIGMEEAKEALKKLFKHK---IVGQNLKYDLAVIENNFGLRL 404

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK--SSIPIDKISDSQ 537
              + D MLM+++L+   S+  + ++A+++ ++     K+++   +  S +P+DK     
Sbjct: 405 SSSYADTMLMAWLLNP-ESNVGLDTLAKRFFNHDMVKFKDVVSKNENFSHVPLDKAC--- 460

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID----QD 593
             E+A E++ + L+L+  L   ++  +LL + + ++ P I  + +ME  GI+ID    + 
Sbjct: 461 --EYASEDAWMTLKLYNKLH-DMLEPRLLEIAKEVEFPFILTLMRMEKEGIKIDGAYFEA 517

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LLK+    I     +L+  I+ L   +FNL+S +QLG +LF +L  P   KTKTG + T 
Sbjct: 518 LLKRTDGAID----ALKHEIFTLCDAQFNLNSTQQLGTVLFEQLGLPPVKKTKTG-YSTD 572

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT--QRVHTFYSLASTMTG 711
              L ++    +P I  ILE+R+L K++STY + L   ++K +   RVHT +    T TG
Sbjct: 573 ENVLNEL-LDKHPSIAKILEYRELYKLRSTYIEPLLK-LSKESPLGRVHTSFIQTGTSTG 630

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP+KT LG+++R  F++     LI  DYSQIELR+LAH +    + + F
Sbjct: 631 RLSSKDPNLQNIPVKTALGREVRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH   A ++FG   E+ +   R  AK+INF ++YG+ P RL+  L I  +EA  Y
Sbjct: 691 RDGKDIHYETALKLFG---EQEAASKRSVAKSINFGLLYGMGPKRLSETLGISMAEAKRY 747

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF  FP I  Y+ +     +  GYVET+ GR+  +D  ++          R A+N  
Sbjct: 748 IESYFATFPTIKAYVMEVAEQAKTTGYVETLLGRKRFFDFEHANAMQYAGY-LREAVNTV 806

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
            QGSAAD+ + +M  +  +L   +   K+LLQIHDEL+FEV E +    +Q      +K 
Sbjct: 807 FQGSAADLIKLSMNKIMATLIHDE--AKLLLQIHDELIFEVVESQ----AQSFALEAQKV 860

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 LR+PLKV+I +  NW E
Sbjct: 861 MEEIYALRIPLKVSIAMGKNWGE 883


>gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047]
 gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047]
          Length = 610

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/618 (39%), Positives = 375/618 (60%), Gaps = 24/618 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+   Y  ++   D+ +W++KL +    +    TD++D   +  + I+ + L+  +    
Sbjct: 9   IDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGEAAYL 67

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R+GI 
Sbjct: 68  PLQLDYLD-APKTLEKSTA--------LAAIKPILENPNSHKIGQNIKFDESIFARHGIE 118

Query: 483 MRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
           ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  ++I   Q
Sbjct: 119 LQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIPLEQ 176

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D L 
Sbjct: 177 ATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALF 236

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T  + 
Sbjct: 237 MQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEV 296

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL+S 
Sbjct: 297 LEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSS 355

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F    D
Sbjct: 356 DPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKD 415

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+  YF
Sbjct: 416 IHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYF 475

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+QG+A
Sbjct: 476 QRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTA 535

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A     
Sbjct: 536 ADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA---- 590

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL V + V  NW E
Sbjct: 591 ELVVPLIVEVGVGKNWDE 608


>gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
 gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
          Length = 879

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 293/989 (29%), Positives = 491/989 (49%), Gaps = 141/989 (14%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + E  L L+DG S  +RAFYA P  +     G   NA+ GF  M   L++  +     +H
Sbjct: 9   KSEETLLLLDGHSLAFRAFYALPAANFSTTGGQHTNAVYGFLGMFLGLVEQEKP----TH 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR   +P+YKA RP  P     Q+ L+R   +  GI  ++ + +EADDI
Sbjct: 65  IAAAFDLSGPTFREAEFPEYKAQRPSTPPEFKGQIELIRETLKTLGITTLDKESYEADDI 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYD--TVKE-EKIDIEHVIKKWGIPP 176
           IA+        G    I + D+D +QLV    T LY    V E  +   E V +K+G+ P
Sbjct: 125 IASLATQGHDAGMNTLICTGDRDSLQLVEDDVTVLYTLRGVSELHRFTPEAVEEKYGVTP 184

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++   L AL GD+ DN+PG+PG+G KTA   +Q+YG+L+ ++ N   I+  K  EN+  Y
Sbjct: 185 KQYPDLAALRGDTSDNMPGVPGVGPKTAQKWIQKYGSLDGVIDNMDDIR-GKVGENLRAY 243

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
               +L+RK+  +  D+ +   L+ L                                  
Sbjct: 244 VADVQLARKITEMVRDLDMVDSLDTL--------------------------------KP 271

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS---DQTSKI---NSEQTPQKL 350
           A+I+P         N  +AI  ++   TT++   F +L    + T+ I     + TP KL
Sbjct: 272 ADIDP---------NDALAIFEKLQFGTTLRNRTFRTLGVEFEDTASIPITEEDLTPGKL 322

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               L+K + Y    D+  + +   DI       ET+G  S +          +K + + 
Sbjct: 323 -ANWLKKNAAYQEGRDAVAEALAV-DIDG-----ETLGLLSAE----------NKGLKLD 365

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           ++ LD KD+                                 L+ +  +    K  H+ K
Sbjct: 366 LAALDAKDE-------------------------------QVLRTWLADRGAPKWFHDSK 394

Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
                L + G ++ G E D  + +Y++     S  +  + Q+   +  +++ ++  S   
Sbjct: 395 QSFHALRQQGFALDGVEHDTSVAAYLVRPDLRSWSLGDVLQR---HAGRDLPENSGS--- 448

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
                        +E +  + +L  ++  +L       +Y  ++ P+  ++++ME  GI 
Sbjct: 449 -------------LERAQAVRELVGIMNQELTDAGQAELYFSMEVPLTHILAEMEARGIA 495

Query: 590 IDQDLLKQVSA----EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           +D+  L++++A    +I+  + +  E   D   ++ NLSSPKQL  +LF     P   KT
Sbjct: 496 VDKAALEELAADYEAQIADEVTAARELAED---DQLNLSSPKQLQKVLFEDFGLPKTKKT 552

Query: 646 KTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           KTG + T A +LE++    ++P + +++  R+  K+KST  D L N I+    R+ T ++
Sbjct: 553 KTG-YSTAAAELEKLQQQTEHPFLNHLMAHREYQKMKSTI-DGLINAIDG-DGRIRTTFN 609

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAK 763
                TGRL+S EPNLQNIP++T+ G+KIR AF +    + L++ADYSQIE+R++AH+++
Sbjct: 610 QKGAATGRLSSSEPNLQNIPVRTEAGRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSE 669

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + +    D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL I
Sbjct: 670 DAGLIEAYRAGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYGLSAFGLSQQLGI 729

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              EA   ++ YF RF G+  Y++K     ++ GY ET++GRR +  E+ S     R   
Sbjct: 730 SPGEAKGIMENYFDRFGGVKRYLDKVVEAAKETGYTETLYGRRRYLPELASSNRVARENA 789

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAA+NAPIQG+AADI + AM+ V ++L +  L +++LLQ+HDELV E+   E+    Q+
Sbjct: 790 ERAALNAPIQGTAADIIKLAMLRVDRALRNANLKSRVLLQVHDELVLEIAPGELEQIQQL 849

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +  +M+ A     +LRVPL V+     NW
Sbjct: 850 LEENMDSAA----SLRVPLDVSAGHGENW 874


>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
 gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
          Length = 917

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/612 (39%), Positives = 357/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I        W  K++     +F   T  +D   ++ + ++ S    K          
Sbjct: 320 YDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMIARLVGLSFSIEPGK--------AA 371

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ ++ H   D   +     E+L+ LK + E+    K+G ++KYD  VL  YGI + G E
Sbjct: 372 YLPVA-HRGPDMP-EQLPIDEVLARLKPWLESADRKKVGQHLKYDAQVLANYGIELNGIE 429

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++  Q   +A 
Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAA 488

Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  LL+  S EI
Sbjct: 489 EDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEI 548

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNLQN 667

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATA 727

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGV 787

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 788 AQYMEDTRTAAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L   +LA++M++Q+HDELV EVP++E++   + +   M         L+VPL
Sbjct: 848 SMIAVDDWLTRDRLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 903

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 904 VAEVGAGANWEE 915



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 150/256 (58%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLVS    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L R L
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRTL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +   LE +
Sbjct: 246 VTVETACDLAPHLESI 261


>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
 gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
          Length = 917

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/612 (39%), Positives = 357/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I        W  K++     +F   T  +D   ++ + ++ S ++        V   
Sbjct: 320 YDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMTARLVGLSFS-IEPGKAAYLPVAHR 378

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
             DL      D         ++L+ L+ + E+    K+G ++KYD  VL  YGI++ G E
Sbjct: 379 GPDLPEQLPID---------DVLARLRPWLESADRKKVGQHLKYDAQVLANYGIALNGIE 429

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++  Q   +A 
Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAA 488

Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  LL+  S EI
Sbjct: 489 EDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEI 548

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNLQN 667

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATA 727

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGV 787

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 788 AQYMEDTRTTAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L   +LA++M++Q+HDELV EVP++E++   + +   M         L+VPL
Sbjct: 848 SMIAVDDWLTRDQLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 903

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 904 VAEVGAGANWEE 915



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 149/256 (58%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + + G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLVS    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L R L
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRTL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +   LE +
Sbjct: 246 VTVETACDLAPHLESI 261


>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
 gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
          Length = 948

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/560 (40%), Positives = 342/560 (61%), Gaps = 23/560 (4%)

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
             +I L+ H   DS  +    +E+L  ++ + ++    K+ H+ KYD  V    G+++ G
Sbjct: 403 ACYIPLA-HRGPDSA-EQLPKREVLERMRAWLQDPARPKLLHHAKYDAHVFANEGVALAG 460

Query: 486 FED-IMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
            +D  ML +YVL+S R    +  +AQ++L     T +E+       I  D+++  Q   +
Sbjct: 461 IQDDTMLQAYVLESHRGV-GLNDLAQRYLGRGGITYEELCGKGAKQIGFDEVAVEQAGHY 519

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E+++  LQL   LRP++  +  L    +L+  +  V++ +E  G+++D   L + S  
Sbjct: 520 ACEDADFTLQLHHALRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAAELGRQSHR 579

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + + +L LE+  Y+L+G+ FNL+SPKQLG+ILF +++ P   KT  G   T  + L ++ 
Sbjct: 580 LGQEMLQLEQRAYELAGQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLTRL- 638

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ + +LE+R LSK+KSTY D LP  IN RT RVHT YS A+ +TGRLAS +PNLQ
Sbjct: 639 AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINARTGRVHTHYSQAAVVTGRLASSDPNLQ 698

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T+ G+++R AF++     L+SADYSQIELRI+AH++    L Q F    DIHR  
Sbjct: 699 NIPVRTEAGRRVREAFVAE-HGVLVSADYSQIELRIMAHVSDDANLQQAFAAGKDIHRAT 757

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+EIFGV +++V    RR AK INF +IYG+  F LA+ L I R  A  YI RYF R+PG
Sbjct: 758 ASEIFGVALDEVGADQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARYPG 817

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + +Y+E T+   RQ GYVET+FGRR+   +I +     R   ERAAINAP+QG+AAD+ +
Sbjct: 818 VAQYMEHTRQLARQQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIK 877

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI----- 956
            AM++V   L+  +LAT+M++Q+HDEL+ EVP+ E+            +A LP++     
Sbjct: 878 MAMVAVQDWLDAERLATRMIMQVHDELILEVPDGELDAV---------RARLPELMCGVA 928

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL   + V  NW++ +
Sbjct: 929 RLRVPLVAEVGVGPNWEQAH 948



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/253 (39%), Positives = 148/253 (58%), Gaps = 12/253 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+ + +    A + A IFD
Sbjct: 48  LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDHK----ADYAACIFD 102

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++YPDYK++RP +PE L  Q+  +  A +A G   + I+G EADDII T   
Sbjct: 103 ARGKTFRDDLYPDYKSHRPPMPEDLAAQIEPIHQAVRALGWQVLAIEGVEADDIIGTLAC 162

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    + + DKDL QLV     L +T+  E +D   V  K+G+PP+++V    L 
Sbjct: 163 QASGMGIRTIVSTGDKDLAQLVDANVTLVNTMSGEVLDETGVRNKFGVPPDRIVDYLMLV 222

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAETARLS 243
           GD+IDN+PG+  +G KTAA  L E+G++++++  A  IK       RE I ++     L+
Sbjct: 223 GDAIDNVPGVAKVGPKTAAKWLAEFGSIDSLVEQADGIKGVAGNNLREAIGQFP----LT 278

Query: 244 RKLVMLRTDVPIT 256
           R+L+ ++ D  + 
Sbjct: 279 RQLLTVKCDCDLA 291


>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
 gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
          Length = 917

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/612 (39%), Positives = 356/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I        W  K++     +F   T  +D   ++ + ++ S ++        V   
Sbjct: 320 YDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMTARLVGLSFS-IEPGKAAYLPVAHR 378

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
             DL      D         ++L+ L+ + E+    K+G ++KYD  VL  YGI++ G E
Sbjct: 379 GPDLPEQLPID---------DVLARLRPWLESADRKKVGQHLKYDAQVLANYGIALNGIE 429

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++  Q   +A 
Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAA 488

Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  LL+  S EI
Sbjct: 489 EDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEI 548

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNLQN 667

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATA 727

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGV 787

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 788 AQYMEDTRTAAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L   +LA++M++Q+HDELV EVP++E++   + +   M         L+VPL
Sbjct: 848 SMIAVDDWLTRDQLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 903

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 904 VAEVGAGANWEE 915



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 150/256 (58%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLVS    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L R L
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRTL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +   LE +
Sbjct: 246 VTVETACDLAPHLESI 261


>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
 gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
          Length = 917

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/612 (39%), Positives = 357/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I        W  K++     +F   T  +D   ++ + ++ S    K          
Sbjct: 320 YDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMTARLVGLSFSIEPGK--------AA 371

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ ++ H   D   +     ++L+ LK + E+    K+G ++KYD  VL  YGI++ G E
Sbjct: 372 YLPVA-HRGPDMP-EQLPIDDVLARLKPWLESADRKKVGQHLKYDAQVLANYGIALNGIE 429

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++  Q   +A 
Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAA 488

Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  LL+  S EI
Sbjct: 489 EDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEI 548

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNLQN 667

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATA 727

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGV 787

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 788 AHYMEDTRTTAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L   +LA++M++Q+HDELV EVP++E++   + +   M         L+VPL
Sbjct: 848 SMIAVDDWLTRDQLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 903

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 904 VAEVGAGANWEE 915



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 149/256 (58%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + + G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLVS    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L R L
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRTL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +   LE +
Sbjct: 246 VTVETACDLAPHLESI 261


>gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902]
 gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902]
          Length = 998

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 319/1024 (31%), Positives = 508/1024 (49%), Gaps = 93/1024 (9%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K DG P +   GF   L    +  + + +A   
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGFLKSLLDTGKTFKPQGVA--- 65

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
            + FD    TFR++   +YKA+R   PE+    L  L ++ +    +P     G+EADD+
Sbjct: 66  -IAFDTAEPTFRHKADTNYKAHRDVAPEVFFQDLEQLQQILSDQMKLPLCMAPGYEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A   G+ V I+S D+DL QLV  +     LY              I  + V+ 
Sbjct: 125 LGTLANRAADAGWGVRILSGDRDLFQLVDNSRDIAVLYMGGGPYAKGSGPTLIQEDGVVS 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228
           K G+ P+K+V L+ALTGDS DNIPG+ G+G KTA  LL++  +L+ +    + ++ +  K
Sbjct: 185 KLGVMPDKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNIDLDAVYATLAEVEAEGPK 244

Query: 229 RRENILEYA---------ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
                ++ A         + A LSR L  +  D+P+    E L L+  +   L   L+ L
Sbjct: 245 ASRGAIKGALVGKLRSDRDNAYLSRMLAEILVDIPLPKDPE-LGLQQVDAEGLSDRLEDL 303

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
           E   L+ +V                 + T    G       + + T K S   +  D TS
Sbjct: 304 ELNSLVRQVGGF--------------VATFSTGGYGANASSEAEKTPKRSPAKTNPDSTS 349

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT- 398
            I S   PQ+   E   ++   P        I + + +Q  VQ+L         I  DT 
Sbjct: 350 SIGSAAAPQQGSGE--AEVGAIPPLQPQL--IESNEALQALVQRLMDCTDPKAPIAVDTE 405

Query: 399 ---MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
              ++ F ++ + + +   +  D  ++    I        S+ +  +    + +L  L  
Sbjct: 406 TTDLNPFKAELVGVGVCWGEANDALAYI--PIGHKPPSELSEATPPQQLPLETVLMALSP 463

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514
           +  +    K   N KYD+L+L R+G+++ G   D +L  Y+ D+  + H +  ++++   
Sbjct: 464 WLASPQHPKALQNAKYDRLILLRHGLTLNGVVIDTLLADYLRDAA-AKHGLDLMSEREFG 522

Query: 515 Y--TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYE 570
           +  T    L  +K +     I  + +  +   + +V  +L L LR  L  +  +LL + E
Sbjct: 523 FRPTTYGDLVGKKQTFADVAIEPASL--YCGMDVHVTRRLALQLRQTLQAMGPQLLPLLE 580

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            +++P+  V++QME TGI+ID   LK +S E+   L  LE +   ++   FNL+SPKQLG
Sbjct: 581 GVEQPLEPVLAQMEATGIRIDVPYLKTLSDELGSTLNRLETDAKQVAEVDFNLASPKQLG 640

Query: 631 DILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           ++LF  L        +TKTG + T A  LE++   D+P++  +LE R LSK+KSTY D+L
Sbjct: 641 ELLFDTLGLDRKKSRRTKTG-FSTDATVLEKLE-NDHPVVPLVLEHRVLSKLKSTYVDAL 698

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+      L+SA
Sbjct: 699 PQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWTLLSA 758

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRIL H++    L + +    D+H + A  +   + + VS   RR  KTINF +
Sbjct: 759 DYSQIELRILTHLSGEEVLQEAYSTGDDVHALTARLLL--DKDDVSADERRLGKTINFGV 816

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR-- 866
           IYG+   R A +  +  +EA +++ +Y  R+P +  ++E  +      GYVETI GRR  
Sbjct: 817 IYGMGAQRFARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILGRRRP 876

Query: 867 IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
            H+D             EI+   + +  +     RAA NAPIQGS+ADI + AM+ +   
Sbjct: 877 FHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQAV 936

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L    +  ++LLQ+HDELV EV  + + T   ++V++ME A    + L VPL V   V  
Sbjct: 937 LLSQGIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENA----VKLSVPLVVETGVGR 992

Query: 971 NWQE 974
           +W E
Sbjct: 993 DWME 996


>gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 782

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/627 (38%), Positives = 368/627 (58%), Gaps = 31/627 (4%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P+    Y  I   + ++ W++KL      +F   T ++D   +K + ++ +      + +
Sbjct: 171 PVVPSDYHTIFTQEQLEGWLEKLSAADLFAFDTETTSLDYMQAKIVGVSFAV--NAGEAA 228

Query: 422 FKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           +          V    D  G    L+ E +L+ LK   EN +  K+G N+KYDK VL  +
Sbjct: 229 Y----------VPCGHDYMGAPEQLSLECVLAALKPLLENPNKHKVGQNLKYDKHVLLNH 278

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSS--IPIDKIS 534
            I ++G   D ML SYV +S  + HD+ S+A+ +L  S    E +  +K +  +  ++I 
Sbjct: 279 DIDLQGIAYDTMLESYVCNSVATRHDMDSLARFYLDRSTIHFEDVAGKKGAKQLTFNQID 338

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQD 593
                 +A E+++V LQL   + P L  E  L HV E ++ P++ V+S++E  G  +D  
Sbjct: 339 IEIAAPYAAEDADVTLQLHQAIWPTLQQEPTLQHVLESIEIPLLPVISRIERNGALVDAT 398

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL Q S E+ + L  LE+  +D++GE+FNLSSPKQLG ILF KL+ P   KT  G   T 
Sbjct: 399 LLGQQSIELEQRLKELEKEAFDIAGEEFNLSSPKQLGVILFEKLELPIIKKTPKGAPSTA 458

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K ++E R LSK+KSTY D LP  IN  T R+HT Y  A T TGRL
Sbjct: 459 EEVLQELAL-DYPLPKVLIEHRGLSKLKSTYTDKLPQMINPATGRIHTSYHQAVTATGRL 517

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+   G++IR+AF++P   K+++ADYSQIELRI+AH++    L + F  
Sbjct: 518 SSSDPNLQNIPIRNAEGRRIRQAFVAPKGYKILAADYSQIELRIMAHLSGDEGLLEAFNQ 577

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H   AAE+FGV +++V+ + RR AK INF +IYG+S F LA QL + R++A  YI 
Sbjct: 578 GKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGLIYGMSAFGLAKQLGVGRNDAQQYID 637

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+  Y++  +     +GYVET+ GRR++  EIN+     R   ER AINAP+Q
Sbjct: 638 VYFERYPGVKSYMDGVRQQAAVDGYVETLEGRRLYLPEINARNGMRRQAAERTAINAPMQ 697

Query: 894 GSAADITRRAMISVHKSL------EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           G+AADI +RAMI+V + L      ++  +  KM++Q+HDELV EV E ++    +     
Sbjct: 698 GTAADIIKRAMIAVDQWLCPTNPKDESAVNAKMIMQVHDELVLEVKESDLDAVRE----K 753

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           +++     + L VPL V++ V +NW E
Sbjct: 754 LKRVMTTTVELSVPLIVDVGVGDNWDE 780



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 7/160 (4%)

Query: 137 IIST-DKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           ++ST DKD+ QLV+    L +T+ E  +D+  V +K+GIPP  ++   AL GD +DNIPG
Sbjct: 1   MVSTGDKDMAQLVNQHVTLVNTMTETVMDVAGVEEKFGIPPNLIIDFLALMGDKVDNIPG 60

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETARLSRKLVML 249
           + G+G KTA  LLQ  G ++ I  N   I+       KK  E + E  E ARLS  L  +
Sbjct: 61  VAGVGEKTALALLQNVGGVDAIYENLESIRSLDFRGAKKMPEKLAENQEAARLSYALATI 120

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +TDV + + L  L  ++ +   L       +F   ++ + 
Sbjct: 121 KTDVDVGVALTDLQQKEIDAEALRQLYTEYDFHGWLDELG 160


>gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994]
 gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994]
          Length = 909

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 304/977 (31%), Positives = 489/977 (50%), Gaps = 88/977 (9%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D   F +R+FYA P L  +H G P   + GF N +  L     K+  + +     D  
Sbjct: 8   IIDTFGFFFRSFYALPPLKNRH-GFPTGLLTGFINFIASL----HKDHSSDYLIFALDAK 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             +FR EI P+YKANR   PE L+ QLP+        G  ++   G+EADD+IA+    A
Sbjct: 63  GPSFRAEIDPNYKANRSPAPEELIQQLPIAIDWIDKMGYKSLSQSGYEADDMIASVVRQA 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
            + GF V ++S DKDL QL+      L D + ++ ++  H  +K+G+ P + +  Q+L G
Sbjct: 123 RQHGFLVRVVSHDKDLYQLIDDDRVVLVDAISKKVMNERHCDEKYGVHPCQFIDYQSLIG 182

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DN+PG+ GIG  TA  LL ++G L+ +      +   + R  +  Y + A  SR+LV
Sbjct: 183 DTADNVPGVKGIGKVTAQKLLSQFGTLDTLYERIEEVTPPRIRGLLETYRDDAFRSRELV 242

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
            L+ DV  T+      +   N      FL    +  L++     Y+ +A         + 
Sbjct: 243 RLKDDVFDTLDFSEFAMHFDN-----PFLPI--YDDLVH-----YEMNAV--------LR 282

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
           T + K +  E++             S + Q+ K    + PQ   L+    L    I++D+
Sbjct: 283 TLKAKALFEESQ------------PSNTPQSEKTEKAEVPQCDSLDGCSVL----IDSDA 326

Query: 368 YTKIVNTKDIQQWVQKLETIGS---ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                        +  +ETI      +F   T  +D      +  + ST D K  T + V
Sbjct: 327 -----------ALIALMETIADDALIAFDTETTGLDPSKDHLVGFSFST-DGK--TGYYV 372

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GIS- 482
             +   L V       G    T+     ++  FE+     IGHNIK+D   + R+ G+  
Sbjct: 373 PMMHSYLGV-------GDQVSTEAAAKAIRLIFEHR---VIGHNIKFDLHFVTRFLGVDR 422

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           +  + D M+++++ DS RS   + +++Q  L +       + K       ++     ++A
Sbjct: 423 LSIYADTMVLAWLTDSSRSLA-MDNLSQSLLHHEMIHFKDTVKKGENFASVAIEDACKYA 481

Query: 543 IENSNVILQLWLLLRPKLIV----EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            E++ +  +L+ +L+ +L++    E L   ++ ++ P    +  ME  GI +D  +L+  
Sbjct: 482 GEDAYITYRLYEVLKEQLLLKGGQEALDEAFD-VEFPFTLTLLGMEKEGIAVDTAVLELF 540

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E++  + +L E I+   G  FNL+SPKQLG ILF  L  P G KTKTG + T  Q LE
Sbjct: 541 KKEVAHEIATLTEQIHSACGTVFNLNSPKQLGVILFETLGLPHGKKTKTG-YSTDEQVLE 599

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI-NKRTQRVHTFYSLASTMTGRLASLE 717
            +   ++P+I  +L++R+  K+ STY + L     N  + R++T +    T TGRL+S  
Sbjct: 600 GLQF-EHPMIPMLLQYREYHKLYSTYIEPLIALAQNDPSSRIYTSFVQTGTATGRLSSKN 658

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP+KT LG +IR AF++P  KKLI  DYSQIELR+LAH ++ T L   F    DI
Sbjct: 659 PNLQNIPVKTALGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNEGHDI 718

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A  +FG    + + + R  AKT+NF ++YG+   +L+  L I   EA + I+RYF 
Sbjct: 719 HMQTAIALFGA---EDASRKRNIAKTVNFGLLYGMGQKKLSDTLGITTKEAKEIIERYFE 775

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FP +  Y        ++ GYVET+  RR ++D   S    ++   ER ++N   QGSA+
Sbjct: 776 TFPSVKGYFNGIVEQAKEIGYVETLLHRRRYFD-FGSATPMLKAAYERESVNTVFQGSAS 834

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + +M  +   +    L  +MLLQIHDEL+FEV  +     +   V +ME+     + 
Sbjct: 835 DLIKLSMNKIDTMIRTEGLRARMLLQIHDELIFEVDADVAEEYAVRFVDAMERI----LE 890

Query: 958 LRVPLKVNIKVSNNWQE 974
           LRVPLK ++ + N+W E
Sbjct: 891 LRVPLKTSMHIGNHWGE 907


>gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
 gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
          Length = 949

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 302/1021 (29%), Positives = 487/1021 (47%), Gaps = 153/1021 (14%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  + K   G   NA+ GF +ML  LL++       +H A  F
Sbjct: 26  LMLLDGHSLAYRAFFALPAENFKTATGQTTNAVYGFTSMLINLLRDEEP----THIAAAF 81

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E+YP YKA R K P+    Q+ L +    A GIP + I+G+EADDIIAT  
Sbjct: 82  DVSRKTFRSEMYPAYKAQRSKSPDEFNGQVDLTKEVLDALGIPVMAIEGYEADDIIATLA 141

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             A+ EG++V +++ D+D +QLV+ + T LY    V E  +     V KK+G+ P +   
Sbjct: 142 TQADAEGYSVLVVTGDRDSLQLVNDSVTVLYPRKGVSELTRFTPAEVEKKYGLTPTQYPD 201

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238
             AL GD  DN+PGIPG+G KTA+  ++EYG+L +++ +   +K K     R N+     
Sbjct: 202 YAALRGDPSDNLPGIPGVGEKTASKWIREYGSLASLVDHVDEVKGKVGDALRANL----A 257

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           + + +R+L  L  D+ +    + L +   +  R+      LEF  L +R+          
Sbjct: 258 SVQTNRQLTELVRDMQLPAGPDELAMVGWDRDRIHQLFDDLEFRVLRDRL---------- 307

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                           FS+LS  T +  S               
Sbjct: 308 --------------------------------FSTLSSATPEAES--------------- 320

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                  D    ++   +++ W+ +    G +   +    +    + P  +AI+  D   
Sbjct: 321 -----GFDLDGAVLGQGEVRAWLAEHAGTGRSGLAVTAPHV-VVGADPTGLAIAAADGT- 373

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                  + ++D++   + D              L  +  +    K  H +K+    L  
Sbjct: 374 -------SAYVDVTAVDADDEQA-----------LADWLADPAMGKALHEVKWGIHALRS 415

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS-----SIPIDK 532
            G ++ G   D  L +Y++  G+ + ++  +A   L Y R+E+     S     S+  D 
Sbjct: 416 RGWTLAGVTSDTSLAAYIVRPGQRTFNLDDLA---LRYLRRELRADDGSGDGQLSLLDDD 472

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +++ E  +  +  +++L  +L  +L     L +   ++ P+  V++ +E  GI +D 
Sbjct: 473 GGAAKLAEQHMLEARAVVELAEVLDTELDRIDSLPLLTEMELPLAFVLADLEAAGIAVDV 532

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D   ++    ++ +       YD+ GE+ NL SPKQL  +LF KL  P   KTKT  + T
Sbjct: 533 DHFGELEKNFAQRIRVAANAAYDVIGEQINLGSPKQLQTVLFDKLDMPKTKKTKT-GYTT 591

Query: 653 TAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            A  L+ +    ++P + ++LE R  +++K T  D L   +     R+HT ++     TG
Sbjct: 592 DADALQALYEKTEHPFLAHLLEHRDATRLKVT-VDGLLKSVAD-DGRIHTTFNQTIAATG 649

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI--------------------SPPTKK------- 744
           RL+S EPNLQNIP++T  G++IR+ FI                     P           
Sbjct: 650 RLSSTEPNLQNIPVRTAAGREIRQGFIVGAGSGASGDGGVGAGSGASGPDGVGAGSGSSG 709

Query: 745 -----------LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
                      L++ADYSQIE+RI+AH+++   L + F    D+H  V +  FGV I++V
Sbjct: 710 HDGGTGDGFDCLMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVPIDEV 769

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           + +MR   K +++ + YG+S F LA QL+I R EA + +  YF RF G+ +Y+       
Sbjct: 770 TTEMRHRVKAMSYGLAYGLSAFGLAAQLKISRDEAKEQMDAYFARFGGVRDYLHDVVAEA 829

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           R+N Y  T+FGRR +  ++NS     R   ER A+NAPIQG+AADI + AMI+VHK L+ 
Sbjct: 830 RRNEYTATLFGRRRYLPDLNSDNWQRRQSAERMALNAPIQGTAADIIKVAMINVHKRLQS 889

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +L ++MLLQ+HDELV EV   E      ++   M  A    I L VPL+V++    +W 
Sbjct: 890 EELRSRMLLQVHDELVVEVATGERDAVEAVVREEMGAA----ITLSVPLEVSVGFGRSWD 945

Query: 974 E 974
           +
Sbjct: 946 D 946


>gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1]
          Length = 922

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/618 (39%), Positives = 360/618 (58%), Gaps = 31/618 (5%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET- 426
           Y  I+    + +W+ KL+     +    T ++D   ++ + +           SF VE  
Sbjct: 323 YDTILTEAQLDEWIAKLKQASLFAVDTETTSLDYMVAELVGM-----------SFAVEAG 371

Query: 427 --IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
              ++ L+     D  G    L K+  L  L+   E+    K+G N+KYD  VL   GI+
Sbjct: 372 KAAYLPLA----HDYVGAPQQLDKQFALEKLRPILEDAKLKKVGQNLKYDISVLANAGIT 427

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           ++G   D ML SYV +S  S HD+  +A K+L +     ++I       +  ++IS    
Sbjct: 428 LQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFNQISLETA 487

Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L   L P+L  E +L  V+  ++ P+I ++S +E  G+ ID  LL Q
Sbjct: 488 APYAAEDADITLRLHQHLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFIDSMLLGQ 547

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+++ +  LE   YD++GEKFNLSSPKQL  + F KL +P   KT  G   T  + L
Sbjct: 548 QSEELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVL 607

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            ++   D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+  TGRL+S E
Sbjct: 608 VELAL-DFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGRLSSSE 666

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T  G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L   F    DI
Sbjct: 667 PNLQNIPIRTVEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNAFAEGKDI 726

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI  YF 
Sbjct: 727 HRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFA 786

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERAAINAP+QG+AA
Sbjct: 787 RYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAA 846

Query: 898 DITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI ++AMIS+   ++ D +    M++Q+HDELVFEV  ++  T  Q +   M KA     
Sbjct: 847 DIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKAA---- 902

Query: 957 NLRVPLKVNIKVSNNWQE 974
           NL V L     + +NW E
Sbjct: 903 NLDVELLAEAGIGDNWDE 920



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 164/291 (56%), Gaps = 13/291 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL  SR +   SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFRN++Y +YKA+RP +P+ L  Q+ PL R+  +A G+P I I G EADD+I T
Sbjct: 62  FDAKGKTFRNDLYQEYKAHRPPMPDDLRSQIEPLHRI-IRALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++   
Sbjct: 121 IARRASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I++ A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVSELAFRGSKTMAAKIIDNA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +  RLS +L  ++TDV +      L  +  +   LI     +EF + +  +
Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWLAEI 291


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/541 (41%), Positives = 343/541 (63%), Gaps = 23/541 (4%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504
            ++I    K+  ENE   KIG N+KYD  V+  YG+ ++G   D ML  Y+LD   + H+
Sbjct: 405 AQKIADEFKEVLENEDITKIGQNLKYDIQVMRNYGVRVQGKMFDTMLAHYLLDP-ETRHN 463

Query: 505 IASIAQKWLSYT---------RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           +  +A+ +L+Y+         +K + +     +P++      V E+A E++++ LQL  +
Sbjct: 464 MDVMAENYLNYSPVSITDLIGKKGVKQGNMRDVPVE-----DVVEYAGEDADITLQLKHI 518

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           L  ++    L  +   +++P+  V+++ME  G++ID+D L ++S E+    L  +E I++
Sbjct: 519 LEKEIKENNLESLLHDVEEPLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIFE 578

Query: 616 LSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           L+G++FN++SPKQLG+ILF K+K      KTKTGQ+ T  + L ++   ++ I   ILE+
Sbjct: 579 LAGQEFNIASPKQLGEILFDKMKLVDKPKKTKTGQYATGEEILSKL-ANEHEIADKILEF 637

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           R+  K+KSTY D+LP  I+K+  RVHT Y  A   TGRL+S  PNLQNIPI+T+ G+ IR
Sbjct: 638 REYQKLKSTYVDALPKLISKKDGRVHTDYRQAVAATGRLSSNNPNLQNIPIRTEKGRLIR 697

Query: 735 RAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           +AF+      +L++ADYSQIELRI+A  ++   + + F+N  DIH   AA++FGV+++ V
Sbjct: 698 KAFVPRDENYQLMAADYSQIELRIMAAFSQDEAMMEAFKNGRDIHATTAAKVFGVDLDDV 757

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
            P MRR AK +NF IIYGIS F LA  L I R+EA+D IK YF  FP +H+Y+EK K   
Sbjct: 758 DPGMRRKAKEVNFGIIYGISAFGLAQNLNISRTEASDIIKAYFKEFPRVHDYMEKVKEDA 817

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           R N YV TI GR+    +INS   +IR   ER AINAPIQGSAAD+ + AMI++HK +E 
Sbjct: 818 RANEYVTTILGRKRWLRDINSRNQTIRGYAERNAINAPIQGSAADMIKIAMINIHKWMEK 877

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             L +KM++Q+HDEL+F+  ++EI      +V  M+ A    + L VP+++ + +++NW 
Sbjct: 878 ENLKSKMIMQVHDELIFDAHKDEIDKLKDKVVDLMKNA----MELDVPMEIGVGIADNWS 933

Query: 974 E 974
           E
Sbjct: 934 E 934



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/295 (36%), Positives = 168/295 (56%), Gaps = 15/295 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           + +  LFL+D  + IYRA +A   TP ++ K  G+   A  GF N L ++L+  +     
Sbjct: 6   ESDKKLFLLDAMALIYRAHFAFSKTPRINSK--GMNTGAALGFTNSLLEILKKEK----P 59

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  V FD  A TFR+E +P YKA R + PE +   +P V+   +AF IP + + GFEAD
Sbjct: 60  THIGVAFDTSAPTFRHEEFPAYKAQREEQPEDIRVAIPYVKKIVEAFNIPVLIMDGFEAD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGI 174
           DII T    A ++GF V +++ DKD  Q+V+    LY         + + +E V KK+ I
Sbjct: 120 DIIGTIAKQAGEDGFKVYMMTPDKDYAQMVTENVFLYKPAFMGNGVDVLGVEEVKKKFDI 179

Query: 175 PP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
              E+++ +  L GD++DNIPGIPG+G KTA   L++YG++E +L +   +K  K +E +
Sbjct: 180 DRVEQVIDILGLQGDAVDNIPGIPGVGAKTAIKFLKQYGSVEGLLEHTDELK-GKMKEKV 238

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
               E A LS+KL  ++ DVP+    + L+L++ N   L    + LEF  ++ RV
Sbjct: 239 EANKEQALLSKKLATIKVDVPLAYEPDKLVLDEPNEEALRELFEELEFRTIMKRV 293


>gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
 gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
          Length = 907

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 300/981 (30%), Positives = 496/981 (50%), Gaps = 97/981 (9%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D   F +R+FYA P   R  DG P   + GF N +  L    +KE  + +     D  
Sbjct: 7   VIDTFGFFFRSFYALPQHLRTKDGFPTGLLTGFTNFIATL----QKEHDSDYIIFAIDSK 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFRNEI  +YKANR   P  L  QLP+        G   +   GFEADDIIAT     
Sbjct: 63  GETFRNEIDVNYKANRSAPPPELTQQLPVAIEWINKMGYKTLGKSGFEADDIIATVVRCV 122

Query: 129 EKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           +++G+ + ++S DKDL QL+      + D +K++ ++ +    K+G+ P++ +  Q++ G
Sbjct: 123 KEKGYKIRVVSHDKDLYQLIDDDKVVIVDAIKKKYVNEKACYDKYGVTPKQFIDYQSILG 182

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           DS DN+PG+ GIG   A  LL+EYG L+NI  +   IK   +++ ++E  E A +S++LV
Sbjct: 183 DSADNVPGVKGIGKVGAEKLLKEYGTLDNIYAHIDEIKGATQKK-LIESREQAYMSKELV 241

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
            L  +V                                      ++C   + E   +D+ 
Sbjct: 242 TLHPNV--------------------------------------FECKEFDFEEYKMDV- 262

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
             EN  + I  E+     +K  Q + L  +T    +  TP++   E  QKL +   +  +
Sbjct: 263 --ENPFLNIYDEL-----VKYEQNAIL--RTLHAKNMVTPEQK--ENAQKLQESCTDKSA 311

Query: 368 -----YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                 T + + K++   + KL      +F   T  +D  ++K +  + S     D+ ++
Sbjct: 312 KLEFKATLLSDEKELNSVLNKLNKETIVAFDTETTGLDYINNKLVGFSFSF---NDEEAY 368

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--G 480
            V      L V    D   K+   +     +++ F ++    +GHNIK+D   + R+   
Sbjct: 369 YVPFGHFYLGV---ADQVSKDVAKQA----MRRIFNSK---VVGHNIKFDLHFVTRFLEE 418

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
             +  + D M+++++++   S+  +  ++ K L +       + K       +       
Sbjct: 419 KDLPVYCDSMILAWLINP-ESALSLDKLSDKLLGHEMVHFKDTVKKGENFSTVELDDACV 477

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYER---LDKPMIDVVSQMEITGIQIDQDLLKQ 597
           +A E++ +  +L+ L   KL ++   H+ E    ++ P +  + +ME  GI++D   L++
Sbjct: 478 YAAEDAFITRKLYKLFLKKLELQDATHLIEEAKTVEIPFMHTLLKMEEEGIEVDTGFLEK 537

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ + L  L ++IY+L+G +FN++S +QLG+ILF KL  P G KTKTG + T  + L
Sbjct: 538 FLVEVKETLEYLTKSIYELAGSEFNINSTQQLGNILFEKLGLPVGKKTKTG-YSTNEKVL 596

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASL 716
             +    +PII  +LE+R++ K+ STY D L    N+  Q R+HT +    T TGRL+S 
Sbjct: 597 SSLK-DKHPIIPKLLEYREVHKLYSTYIDPLLKLANEDEQHRIHTSFVQTGTATGRLSSK 655

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIP +T LG KIRR F++   KK I  DYSQ+ELR+LAH ++   L   F +  D
Sbjct: 656 NPNLQNIPTRTPLGAKIRRGFVAGEGKKFIGIDYSQMELRLLAHFSQDPVLVNAFMHDKD 715

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A  +FG   E+ +   R  AKT+NF ++YG+ P +L+  L I   EA + I++YF
Sbjct: 716 IHLQTAIVLFG---EEEAAHKRNIAKTVNFGLLYGMGPKKLSDTLGITTKEAKEIIEKYF 772

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             F  +  Y        ++ GYVET+ GRR ++D  N+     R   ER ++N+  QGS 
Sbjct: 773 ESFHTVKAYFRSIVESSKEKGYVETLLGRRRYFDYENAT-PMYRAAYERESVNSVFQGSV 831

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE---EEITTASQIIVHSMEKACL 953
           +D+ + +M  +H  + + KL  KMLLQIHDEL+FEV E   +E+    + I+  +     
Sbjct: 832 SDVIKLSMNKIHTIINEEKLQAKMLLQIHDELIFEVDEKVADELGNRFRDIMDHI----- 886

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             + L +PLK ++ + +NW E
Sbjct: 887 --VELNIPLKASLNIGDNWGE 905


>gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977]
 gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus]
          Length = 902

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 298/986 (30%), Positives = 485/986 (49%), Gaps = 115/986 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           K+  L L+DG+S  +RAFYA P  + K   GL  NA+ GF +ML  LL    ++   +H 
Sbjct: 11  KQPTLLLLDGNSLAFRAFYALPAENFKTQSGLTTNAVYGFTSMLINLL----RDEAPTHV 66

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A  FD    TFR++ YP+YKA R   P+    Q+ + +   QA GI  +  +GFEADDII
Sbjct: 67  AAAFDVSRKTFRSDRYPEYKATRSATPDEFRGQIDITKEVLQALGITVLAEEGFEADDII 126

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPE 177
           AT     + EGF V +++ D+D +QLV+   T LY         +   E V++K+G+ P 
Sbjct: 127 ATLATQGQAEGFKVFVVTGDRDSLQLVNEDVTVLYPRKGVSDLTRFTPEAVVEKYGLTPS 186

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENIL 234
           +     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++  A  ++ K     R N+ 
Sbjct: 187 QYPDFAALRGDPSDNLPGIPGVGEKTASKWILEYGSLQELVDKADTVRGKVGDSLRANL- 245

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
               +  L+R+L  L   VP+      L L   +  ++      LEF  L +R+  T + 
Sbjct: 246 ---ASVILNRELTDLVRTVPLPYVPAQLALAPWDRDQIHRLFDDLEFRVLRDRLFETLE- 301

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                               A+E E+D                               E 
Sbjct: 302 --------------------AVEPEVD-------------------------------EG 310

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            Q   Q           +    +  W+ +    G  S   +  T   +     A+AI++ 
Sbjct: 311 FQLAGQ----------ALEPGTVAAWLAEHTGDGRRSGLAVVGTYTPYDGDATAVAIASA 360

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           D         +  +ID +  T  D            + L ++  +    K  H  K    
Sbjct: 361 DG--------DGAYIDTTTVTPDDE-----------AALAEWLADAARPKALHEAKQAIH 401

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-----KSRKSSI 528
            L   G  + G   D  L +Y++  G+ S  +  ++   L Y R+E+      + + S +
Sbjct: 402 ALAGRGWELGGVTSDTALAAYLVRPGQRSFALDDLS---LRYLRRELRAEDDGEQQLSLL 458

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D   D++  +  +  +  ++ L   L  +L   +   +   ++ P+  V++ +E  GI
Sbjct: 459 DEDGAGDAKAAQAQMLRARAVIDLADALDVELERIESAGLLTDMELPVQRVLAGLESVGI 518

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D D L  +  + +  +    +  Y + G++ NL SPKQL  +LF +L  P   KTKT 
Sbjct: 519 AVDTDHLSSLQNQFASGIREAADAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKKTKT- 577

Query: 649 QWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
            + T A  L+ + +   +P ++++L  R ++++K T  D L   +     R+HT ++   
Sbjct: 578 GYTTDADALQTLFDKTGHPFLEHLLTHRDVTRLKVT-VDGLLKSVAA-DGRIHTTFNQTI 635

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITP 766
             TGRL+S EPNLQNIP++T+ G++IR  F+     ++L++ DYSQIE+RI+AH++    
Sbjct: 636 AATGRLSSTEPNLQNIPVRTEAGREIRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEG 695

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    D+H  VAA  FGV I++V+ ++RR  K +++ + YG+S + LATQL+I   
Sbjct: 696 LIEAFNTGEDLHSFVAARAFGVPIDEVTAELRRRVKAMSYGLAYGLSAYGLATQLKISND 755

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA + + +YF RF G+ +Y+    +  R++GY  T+ GRR +  +++S     R   ERA
Sbjct: 756 EAKEQMDQYFSRFGGVRDYLRAVVDQARKDGYTSTVLGRRRYLPDLDSGDRLRREAAERA 815

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+NAPIQGSAADI + AMI+  K+L D  L ++MLLQ+HDEL+FEV E E  +   ++  
Sbjct: 816 ALNAPIQGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVRK 875

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972
           +M  A      L VPL+V++    +W
Sbjct: 876 TMGSAY----PLDVPLEVSVGYGRSW 897


>gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
 gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
          Length = 986

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 321/1027 (31%), Positives = 504/1027 (49%), Gaps = 111/1027 (10%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K DG P +   GF   L  LL N +  S     
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGTPTSVTYGF---LKALLDNCKGLS-PQGI 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
            + FD    TFR++   +YKANR   P++    L  L  +      +P     G+EADD+
Sbjct: 65  VIAFDTAEPTFRHQADVNYKANRDVAPDIFFQDLKQLQEILENNLQLPLCLAPGYEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A ++G+ V I+S D+DL QLV        LY        +     ID   V+ 
Sbjct: 125 LGTLANQASRDGWGVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPSLIDEAGVLS 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228
           K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL+E G+L+ I    + ++ +  K
Sbjct: 185 KLGVIPNKVVELKALTGDSSDNIPGVKGVGPKTAITLLKENGDLDGIYNALAEVEAEGEK 244

Query: 229 RRENILEYAETARLSRK-----LVMLRTDVPITIPLE---HLILEDCNGPRLISFLKALE 280
                ++ A  ++LS       L +   ++ + IPL     L L   +   L   L +LE
Sbjct: 245 ASRGAIKGALKSKLSNDRDNAYLSLHLAEILVDIPLPKAPRLELGSVDNDGLTDRLSSLE 304

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
              L+ +V +            V   ++   K    E E  +  T      SS   + S 
Sbjct: 305 LNSLVRQVPS-----------FVATFSSGGFKANRHELEPSKSATSPVEPESSTETKVSN 353

Query: 341 INSEQT--PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL----ETIGSASFKI 394
            N +    PQ                      I N +++Q+ V++L    + +   +   
Sbjct: 354 DNEQPALEPQL---------------------ITNPEELQELVKRLMGYRDRLKPVALDT 392

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD---STGKNTLTKE-IL 450
            T  ++ F ++ + + +   +   D ++      I +  H   +   +     L  E +L
Sbjct: 393 ETTALNPFCAELVGLGVCWGEGLQDLAY------IPIGHHPPAELLEAEAACQLPLEAVL 446

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
             +  +  +    K   N KYD+L+L R+G+++ G   D +L  Y+ D+  + H +  +A
Sbjct: 447 KAIAPWLASNDHPKALQNAKYDRLILLRHGLALEGVVMDTLLADYLRDAA-AKHGLEVMA 505

Query: 510 QKWLSYTRKEI--LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           ++    T      L  +  +     I  + +      +    L L L  + + +  KLL 
Sbjct: 506 EREFKITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLALRLRAQLEDMGAKLLP 565

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           + E++++P+  V++ ME TGI+ID   L+ +S E+ + L  LEE   + +G  FNL+SPK
Sbjct: 566 LLEQVEQPLEPVLALMEATGIRIDLPYLQTLSVELGETLERLEEQAREAAGVDFNLASPK 625

Query: 628 QLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           QLG++LF  L        +TKTG W T A  LE++   D+P++  +LE R LSK++STY 
Sbjct: 626 QLGELLFETLGLNRKKSRRTKTG-WSTDANVLEKLEA-DHPVVPLVLEHRVLSKLRSTYV 683

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+     +L
Sbjct: 684 DALPQLVESETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWQL 743

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           +SADYSQIELRIL H++    L + F N  D+H + A  +  ++ ++VS   RR  KTIN
Sbjct: 744 LSADYSQIELRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSSDERRLGKTIN 801

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F +IYG+   R A    + ++EA D++ RY  R+  +  ++E  +      GYVET+ GR
Sbjct: 802 FGVIYGMGAQRFARSTGVSQAEAKDFLSRYKQRYAKVFTFLELQERLALSEGYVETLLGR 861

Query: 866 R--IHYDEIN----------------SPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           R   H+D                   + +  +     RAA NAPIQGS+ADI + AM+ +
Sbjct: 862 RRPFHFDRNGLGRLLGKDPMDIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQL 921

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            + L    L  ++LLQ+HDELV EV    +    Q++V +MEKA    + L VPL V   
Sbjct: 922 QEKLTAADLPARLLLQVHDELVLEVDPTALEDVQQLVVQTMEKA----VELSVPLVVETG 977

Query: 968 VSNNWQE 974
           + +NW E
Sbjct: 978 IGDNWME 984


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/533 (42%), Positives = 336/533 (63%), Gaps = 12/533 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506
           +I++ L+  +ENE  LK+G NIKYD +VL  YG+ +RG   D ML  YVL      H++ 
Sbjct: 425 KIINELRPLYENEKSLKVGQNIKYDMIVLQNYGVQVRGALFDTMLAHYVLQP-ELRHNMD 483

Query: 507 SIAQKWLSYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +A+ +L Y      E++ ++ K+   +  +    V  +A E++++ L+L  +L  +L  
Sbjct: 484 YLAEIYLHYQTIHIDELIGAKGKNQKNMRDLPAEDVYRYACEDADITLKLKNVLEKELKE 543

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           +   H++  ++ P++ V+  +E  G+++D + LKQ S   +  L  +E+NIY+L+GE FN
Sbjct: 544 QGAEHLFYEIEMPLVPVLVNIETNGMRLDTEALKQSSEHFTVRLQEIEKNIYELAGETFN 603

Query: 623 LSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           + SPKQ+G++LF KLK    AK TKTGQ+ T+ + LE +  G + +I  ILE+R L K+ 
Sbjct: 604 IGSPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLR-GKHAVIGKILEYRGLKKLL 662

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D+LP  IN RT R+HT ++ A T TGRL+S  PNLQNIPI+ + G++IR+AFI   
Sbjct: 663 STYIDALPQLINSRTGRIHTSFNQAVTSTGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDD 722

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             +  SADYSQIELRI+AH+++   +   F +  DIH   AA+I+ ++IE+V+  MRR A
Sbjct: 723 GCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDIHAATAAKIYKIDIEEVTSDMRRKA 782

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT NF IIYGIS F LA +L + R EA + I  YF  +P + EY++K+    R+NGYVET
Sbjct: 783 KTANFGIIYGISVFGLAERLNVSRQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVET 842

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           IF R+    +INS  + +R   ER AINAPIQGSAADI + AM  +++ +  +KL  KM+
Sbjct: 843 IFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRITSNKLKAKMI 902

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDEL F VP  E     QI++  ME A      + VPLK +    NNW E
Sbjct: 903 LQVHDELNFSVPASEKELVQQIVIEEMEHAY----RMHVPLKADCGWGNNWLE 951



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/299 (37%), Positives = 167/299 (55%), Gaps = 22/299 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   + LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MNSTDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PSHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPVIKDIIRAYRIPILEVSGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A K+G    +++ DKD  QLVS    +Y    T   E + IE V  K+ I
Sbjct: 115 DDVIGTLATEAGKQGITTYMMTPDKDYGQLVSDNVFMYRPKHTGGFEVMGIEEVKAKFNI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
               +++ +  L GDS DNIPG PG+G KTA  L+ E+ ++EN+L +  R+K   + +  
Sbjct: 175 QSTAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFDSIENLLEHTDRLKGALKTK-- 232

Query: 234 LEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
               ET R     S+ L  ++ DVPIT+ +  L+ E+ +  +L    + LEF  LI+RV
Sbjct: 233 ---VETNREMIIFSKFLATIKIDVPITLDMNALVREEPDEEKLRKIFEELEFRTLIDRV 288


>gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1]
 gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1]
          Length = 937

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/615 (38%), Positives = 364/615 (59%), Gaps = 28/615 (4%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           YT I++   + +W+ K+E     +    TD++D   ++ + I+ S            E  
Sbjct: 341 YTTILSEAQLDEWLAKIEAAELTALDTETDSLDEMVARIVGISFSVA--------VGEAA 392

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486
           +I L  H   D   +  L K +L+ L+ + E+    K+G ++KYD+ V   +GI++RG+ 
Sbjct: 393 YIPLR-HEGMDVPEQLDLDK-VLARLRPWLEDASRKKLGQHVKYDQHVFANHGITVRGYA 450

Query: 487 EDIMLMSYVLDSGRSSHDIASIA-----QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            D ML SYVL++ R  H++ S+A     +  +SY  +++    KS IP  ++   +   +
Sbjct: 451 HDTMLQSYVLEADRP-HNLTSLALRHVNRSGISY--EDLCGKGKSQIPFAQVPVDKAAAY 507

Query: 542 AIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           + E+S+  L +   L P++ V   LLH+YE L+    + + ++E  G+ ID   L + S 
Sbjct: 508 SCEDSDQTLDVHNTLWPRIQVHAGLLHIYE-LEMQTSEALFRIERNGVSIDAGELARQSN 566

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           ++   +L LEE  Y+++G+ FNLSSPKQLG+I F KL  P   KT TG   T  + LE++
Sbjct: 567 DLGARILKLEEEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKL 626

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+   +LE R LSK+K TY D L         RVHT Y+ A  +TGRL+S +PNL
Sbjct: 627 -AEDYPLPAKLLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVTGRLSSNDPNL 685

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T  G+++R AF++P  K + SADYSQIELRI+AH++    L   F+N LD+HR 
Sbjct: 686 QNIPVRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRA 745

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV++++VS + RR+AK INF +IYG+S F LA  L I    AA YI +YF R+P
Sbjct: 746 TAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDKYFQRYP 805

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+++T       GYVET+FGRR+   EIN      +   ERAAINAP+QG+AAD+ 
Sbjct: 806 GVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAAINAPMQGTAADLI 865

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-NLR 959
           ++AM++V   L+  K    +++Q+HDELVFE+PE     A++  V +   A +  + +L 
Sbjct: 866 KKAMVAVQARLDAEKPEVLVIMQVHDELVFELPE-----AARDWVQAEIPAIMAGVADLS 920

Query: 960 VPLKVNIKVSNNWQE 974
           VPL   I   ++W++
Sbjct: 921 VPLLAEIGFGSSWEK 935



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 163/293 (55%), Gaps = 10/293 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A P L R   G P +   G    +  ++Q  RK+  A +
Sbjct: 1   MSNSKTLVLVDGSSYLYRAYHAMPDL-RAIPGDPASPATGAIRGMVNMMQALRKDVQADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
              +FD    TFR+E+Y +YKA R  +P+ L  Q+  +       G   + + G EADD+
Sbjct: 60  AVCVFDASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVAMLGWKVVAVPGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT    A  +G  V + S DKDL QLV+    + DT+  +K D+  V  ++G+PP  M+
Sbjct: 120 IATLAQTAAAQGIQVIVSSGDKDLSQLVNEHVTIIDTMNGKKRDVAGVTAEFGVPPALMI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GD++DN+PG+  +G KTAA  L+E+G L+N++ NA+ IK     +N+ +   + 
Sbjct: 180 DYQALVGDTVDNVPGVTKVGPKTAAKWLEEFGTLDNLIANAAGIKGVA-GQNLRDAIASG 238

Query: 241 R--LSRKLVMLRTDVPIT-----IP-LEHLILEDCNGPRLISFLKALEFTKLI 285
           +  LSR+LV ++TD  ++     +P L+ + L + +   L  F +   F  L+
Sbjct: 239 QLALSRQLVTMKTDCDLSAYIGGLPQLDAVTLAEPDSAALAPFYEKYGFKGLV 291


>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
 gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
          Length = 920

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/612 (39%), Positives = 359/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I   +    W  K++     +F   T  +D   ++ + ++ S    K          
Sbjct: 323 YETIQTWEQFDAWFAKIDAAALTAFDTETTALDPMLARLVGLSFSVEPGK--------AA 374

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ ++ H   D   +  L  E+L+ LK + E+    K+G ++KYD  VL  Y I++ G E
Sbjct: 375 YLPVA-HRGPDMPEQLPL-DEVLARLKPWLESADRKKVGQHLKYDAQVLANYDIALNGIE 432

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYV++S R+ HD+ S+A + L       +++       I  D+++ +Q  E+A 
Sbjct: 433 HDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 491

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID   L   S EI
Sbjct: 492 EDADITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEI 551

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 552 ATRLIELEGEAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 610

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 611 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQN 670

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 671 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 730

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 731 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 790

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 791 AQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 850

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L   +LA++M++Q+HDELV EVPE E++   + +   M         L+VPL
Sbjct: 851 SMIAVDDWLTRDRLASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVA----KLKVPL 906

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 907 VAEVGAGANWEE 918



 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 152/256 (59%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 15  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 69

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 70  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 129

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 130 EAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 189

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y  L+ ++ +A+ IK     +N+    +   L R+L
Sbjct: 190 GDTVDNVPGVEKCGPKTAVKWLTQYDTLDGVIEHAADIKGVV-GDNLRRALDFLPLGRQL 248

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +T  LE +
Sbjct: 249 VTVDTSCDLTPHLESI 264


>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
 gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
          Length = 917

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/612 (39%), Positives = 359/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I   +    W  K++     +F   T  +D   ++ + ++ S    K          
Sbjct: 320 YDTIQTWEQFDAWFAKIDAAALTAFDTETTALDPMLARLVGLSFSVEPGK--------AA 371

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ ++ H   D   +  L  E+L+ LK + E+    K+G ++KYD  VL  Y I++ G E
Sbjct: 372 YLPVA-HRGPDMPEQLPL-DEVLARLKPWLESADRKKVGQHLKYDAQVLANYDIALNGIE 429

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYV++S R+ HD+ S+A + L       +++       I  D+++ +Q  E+A 
Sbjct: 430 HDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 488

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID   L   S EI
Sbjct: 489 EDADITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEI 548

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 549 ATRLIELEGEAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQN 667

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 727

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 787

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 788 AQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L   +LA++M++Q+HDELV EVPE E++   + +   M         L+VPL
Sbjct: 848 SMIAVDGWLTRDQLASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVA----KLKVPL 903

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 904 VAEVGAGANWEE 915



 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 152/256 (59%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y  L+ ++ +A+ IK     +N+    +   L R+L
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYDTLDGVIEHAADIKGVV-GDNLRRALDFLPLGRQL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +T  LE +
Sbjct: 246 VTVDTSCDLTPHLESI 261


>gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)]
          Length = 1018

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/545 (41%), Positives = 341/545 (62%), Gaps = 27/545 (4%)

Query: 449  ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM----RGFE-DIMLMSYVLDSGRSSH 503
            +L+ LK   EN    KIG ++KYD  VL +YGI +    + +E D ML SYVL++  + H
Sbjct: 480  VLTKLKPILENPEIGKIGQHLKYDAHVLRKYGIELNTSPKNWEMDTMLASYVLNAAATRH 539

Query: 504  DIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             +  +A+ +L   + + +++       +  DK++ +   ++A E++++  QL+ L + +L
Sbjct: 540  SMDDLARHYLHTQTISFEDVAGKGAKQVTFDKVAINIASDYACEDADITYQLFELFQDRL 599

Query: 561  ----IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
                + ++LLH    L+ P+  ++ QME  GI I +  L ++S    + ++ LE+  Y  
Sbjct: 600  KDDTVNQRLLH---ELEIPVAQILCQMESEGIMIKRSFLNELSERFDEEIIELEKQAYVE 656

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            +GE+FNL SPKQLG++LF KL    G KTK+GQ+ T    L +I   D+P+ +  LE+R 
Sbjct: 657  AGEEFNLGSPKQLGEVLFDKLGVIGGKKTKSGQYSTGEAVLSKI---DHPLAEIALEYRS 713

Query: 677  LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            L+K+K+TY D+L    +K T RVHT Y  A T TGRL+S +PNLQNIPI+T  G+ IR+A
Sbjct: 714  LAKLKNTYTDALDAVADKDTDRVHTSYHQALTSTGRLSSTDPNLQNIPIRTKTGRLIRQA 773

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            FI+P  + L++ADYSQIELR++AH +    L + F   LDIH   AAE+ G ++++V+P 
Sbjct: 774  FIAPEGRVLLAADYSQIELRLMAHFSGDANLTKAFNEGLDIHTATAAEVLGKSVDEVTPT 833

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
             RR+AK INF ++YG+S F LA QL++ R EA DYI +YF R+PG+  Y++ T++     
Sbjct: 834  ERRNAKAINFGLLYGMSAFGLAKQLQMSRGEAQDYIDQYFKRYPGVRRYMQDTRDNAVDK 893

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
            GY+ETI GR+++  +INS    +R   ERAAINAP+QGSAAD+ + AMI+V K L   K 
Sbjct: 894  GYIETILGRKLYTPDINSNNQMVRRGAERAAINAPLQGSAADLIKLAMIAVDKVLP--KQ 951

Query: 917  ATKMLLQIHDELVFEVPEEEITTASQIIVHSME-------KACLPKINLRVPLKVNIKVS 969
              KMLLQ+HDELVFEV  ++     ++I ++M+       K     ++  VPL V   V 
Sbjct: 952  NAKMLLQVHDELVFEVDSDKADEIGELIKNAMQNVLSDTAKDMGWDVDFAVPLLVETGVG 1011

Query: 970  NNWQE 974
            +NW E
Sbjct: 1012 DNWDE 1016



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/256 (39%), Positives = 148/256 (57%), Gaps = 5/256 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS +++R ++A P       GL  NAI G  N L K+++        +H AV FD
Sbjct: 50  FILVDGSYYLFRTYHALPKTMMNSQGLTTNAIRGTLNALLKVMRRYN----PTHMAVCFD 105

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR+ +  +YKANRPK+   L  Q+P +    +A GIP + I+G EADDII T T+
Sbjct: 106 TKSPTFRHAMSEEYKANRPKMDPELAEQIPYIHRLVRALGIPLLRIEGAEADDIIGTLTH 165

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A +EG  V I S DKD+MQL++    L D+   + +D++ V  K+GI P +M+ L  L 
Sbjct: 166 RAVQEGHHVVISSGDKDMMQLINDCVILEDSFVGKVVDVQGVEDKYGIKPNQMIDLLTLM 225

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I GIP +G KTA   L +Y  ++NI+ NA +IK  K  E ++E+A+     R+L
Sbjct: 226 GDASDGIKGIPSVGQKTAVKWLNQYQTVDNIVANAHQIK-GKVGEKLVEFADNIPRDRQL 284

Query: 247 VMLRTDVPITIPLEHL 262
             + T++ I    E L
Sbjct: 285 ATIVTNLEIGQDWEDL 300


>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
 gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
          Length = 917

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/612 (39%), Positives = 358/612 (58%), Gaps = 21/612 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I   +    W  K++     +F   T  +D   ++ + ++ S    K          
Sbjct: 320 YDTIQTWEQFDAWFAKIDAAALTAFDTETTALDPMLARLVGLSFSVEPGK--------AA 371

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ ++ H   D   +  L  E+L+ LK + E+    K+G ++KYD  VL  Y I + G E
Sbjct: 372 YLPVA-HRGPDMPEQLPL-DEVLTRLKPWLESADRKKVGQHLKYDAQVLANYDIELNGIE 429

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYV++S R+ HD+ S+A + L       +++       I  D+++ +Q  E+A 
Sbjct: 430 HDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 488

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID   L   S EI
Sbjct: 489 EDADITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEI 548

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNLQN
Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQN 667

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  A
Sbjct: 668 IPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 727

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+
Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 787

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + 
Sbjct: 788 AQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           +MI+V   L   +LA++M++Q+HDELV EVPE E++   + +   M         L+VPL
Sbjct: 848 SMIAVDDWLTRDRLASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVA----KLKVPL 903

Query: 963 KVNIKVSNNWQE 974
              +    NW+E
Sbjct: 904 VAEVGAGANWEE 915



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 152/256 (59%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 12  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I T   
Sbjct: 67  AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +Y +L+ ++ +A+ IK     +N+    +   L RKL
Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYESLDGVIAHAADIKGVV-GDNLRRALDFLPLGRKL 245

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +   LE +
Sbjct: 246 VTVDTSCDLAPHLESI 261


>gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
 gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
          Length = 904

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 243/619 (39%), Positives = 368/619 (59%), Gaps = 25/619 (4%)

Query: 363 INNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           IN   Y +++NTK D+  W+  ++     S    T++++   ++ + I++     +    
Sbjct: 302 INTKEY-QLINTKHDLALWINSIKEEKFFSIDTETNSLNTMKAELVGISLCINPGR---- 356

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 +I L     ++S+        +L  LK   E+    K+G N+KYD  +   YGI
Sbjct: 357 ----ACYIPL---CHKNSSVDQLSLAAVLEDLKPILEDSSIKKLGQNLKYDAHIFLNYGI 409

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKISDSQ 537
            + G  +D MLMSYV++S ++ H +  ++ K+L +  K    ++    + +  D++S   
Sbjct: 410 EINGISDDTMLMSYVIESNQN-HGMDKLSAKYLGHNCKSYESLVGKGVNQLTFDQVSVED 468

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E+++V LQL+L ++  L     LL VY+ ++ P +  +  +E  G+ ID  +L 
Sbjct: 469 AVPYAAEDADVTLQLYLAMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILG 528

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S  I + LL LEE  +DL+G+ FNLSSPKQL +ILF KL+     KT +G   T+ + 
Sbjct: 529 DQSKVIGEKLLLLEEKAFDLAGQPFNLSSPKQLQEILFEKLEIKPLKKTPSGTPSTSEEV 588

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L ++   + P+ K ILE+R L+K+KSTY D LP  IN+ + RVHT Y+ A  +TGRLAS 
Sbjct: 589 LSELAL-NYPLPKLILEYRSLAKLKSTYTDKLPKMINESSGRVHTSYNQAIAITGRLASS 647

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+T  G+K+R AFI+P   K++SADYSQIELRI+AH++K   L   F+N+ D
Sbjct: 648 DPNLQNIPIRTVEGRKVREAFIAPDGSKILSADYSQIELRIMAHLSKDKRLVAAFKNNED 707

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH + A EIF ++   VS + RR+AK INF +IYG+  + LA  L I R+ A +YI+RYF
Sbjct: 708 IHTITAGEIFNIDNSAVSSEQRRYAKVINFGLIYGMGVYGLAKNLNIERAAAQNYIERYF 767

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P + EY+E TK   R+NGYVET FGRR+   EIN      R   ERAAIN P+QG+A
Sbjct: 768 SKYPSVREYMEDTKQDARKNGYVETHFGRRLWVPEINGSNGMQRAGAERAAINGPMQGTA 827

Query: 897 ADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AD+ + AM+ V   L+  + L  KM++Q+HDELVFEVP+ E+T   + I   ME      
Sbjct: 828 ADLIKMAMVGVKTWLDGQRHLKGKMIMQVHDELVFEVPDTEVTEFKENIKRIMENVA--- 884

Query: 956 INLRVPLKVNIKVSNNWQE 974
             + VPL V++    NW++
Sbjct: 885 -QMDVPLIVDLGEGKNWEQ 902



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 184/345 (53%), Gaps = 16/345 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P   R  DG P   I G  NML    +N  K+  + +   IFD
Sbjct: 4   LLLVDGSSYLYRAFHAMPDF-RNKDGEPTGVIYGVLNML----RNIHKQYPSDYSVCIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN+IY +YKANRP +P+ L  Q+  ++ A  A G P +   G EADD+I T T 
Sbjct: 59  AKGKTFRNDIYTEYKANRPSMPDDLACQIEPLKEAINAMGWPMLIESGVEADDVIGTLTQ 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A      V I + DKDL QLV+  T L +T+  E +DI+ V  K+G+PP+ ++   ++ 
Sbjct: 119 QANSHNIKVVISTGDKDLAQLVNEHTVLINTMTNELLDIDGVKNKFGVPPQLIIDYLSII 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAETARLSR 244
           GD  DN+PG+  +G KTA   L+EYG+L++I+ NA +            L +  TA   +
Sbjct: 179 GDKADNVPGVEKVGPKTALKWLEEYGDLKSIIGNADKFTGVVGNNLRQALAWLPTA---K 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT-----TYDCDAANI 299
           +L+ ++ DV I         +D +   L +  +   F+  +  ++T     + + ++  +
Sbjct: 236 ELITIKCDVKINYSWSDFEKKDQDNIALSNLYQKYNFSSWLRDMSTQIEHSSEEHNSPLV 295

Query: 300 EPVVLDINTTENKGIAIETEID-RDTTIKTSQFSSLSDQTSKINS 343
            P    INT E + I  + ++     +IK  +F S+  +T+ +N+
Sbjct: 296 NPKADFINTKEYQLINTKHDLALWINSIKEEKFFSIDTETNSLNT 340


>gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567]
 gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567]
          Length = 955

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 305/996 (30%), Positives = 487/996 (48%), Gaps = 105/996 (10%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
           + DG    A+  F + L  ++    K+   SH AV FD P  TFR E Y +YK+ R  IP
Sbjct: 12  RSDGQHTEAVHAFLSTLLNII----KDHNPSHIAVAFDLPGGTFRTEEYSEYKSGRNVIP 67

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148
           E    QL L++    A  IPA+  + +EADDI+AT T    +  + V I+S D+D+ QLV
Sbjct: 68  EAFDGQLDLIKKMLGALKIPALTQENYEADDIVATLTRQGSEAQYKVLILSGDRDIFQLV 127

Query: 149 SP-TTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
           +   T LY          +++D   V KK  +PP     L ALTG+  DN+PG+PG+G  
Sbjct: 128 TDDVTLLYPVTTGPSKGIQRMDPAAVEKKTKVPPRLYPDLAALTGEQADNLPGVPGVGPG 187

Query: 203 TAALLLQEYGNLENILINASRIKQKKR---RENILEYAETARLSRKLVMLRTDVPITIPL 259
            AA  L EYG+LE +L+N+  IK KK    RENI    E  R +R+L  L   + + +  
Sbjct: 188 FAAKWLHEYGDLEGVLVNSENIKGKKGEALRENI----ENVRRNRRLNQLVDTLNLDVEF 243

Query: 260 EHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET 318
           + +  + D     L +F   +EF  +  R           + PV+  +            
Sbjct: 244 DQMRFIPDLQ--ELEAFFDEVEFRTIRKRAQDI-------LGPVIRALGAQ--------- 285

Query: 319 EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQ 378
                  ++T+    ++D          P     E        PI  D    + +  D +
Sbjct: 286 -------VRTAGEEPMTDNG-------VPSGPTFE--------PIRTDEAITVTSAADFR 323

Query: 379 QWVQKLETIGSA------SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV----ETIF 428
            W +    +G        + +I      A    P+       +    T  K+    E   
Sbjct: 324 SWCEHAAHVGYGHDASGNAIEIPERLKGAVTLFPVIDVPVAREGVKVTKTKIRAAEENPV 383

Query: 429 IDLSVHTSQDST---GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
           +   + TS++S+       +++++ S   ++  +    KI  ++K  + +L  YG  + G
Sbjct: 384 LRGIILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKNQRKLLREYGYKLDG 443

Query: 486 -FEDIMLMSYVLD----SGRS--SHDIASIAQKWLSYTRKEI--LKSRKSSIPIDKISDS 536
             ED  L SY+      + R   +  I  +A+K+L   ++E   L   + ++ + ++   
Sbjct: 444 AIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQEFSELVFPEEALSLFEMPGE 503

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +  + S VI +L  +L  ++  +  L +YE ++ P++ V++ ME  GI +   LL 
Sbjct: 504 ENLRYFTQVSRVIHELARILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLN 563

Query: 597 QVSAEISKNLLSLEENIY-----DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +++   S      EE        D++GE  NL+S KQL  +LF +L  P   K K+G + 
Sbjct: 564 ELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSG-YS 622

Query: 652 TTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           T ++ +  +    +P       +  +  +R   K+K T        +     RVHT +  
Sbjct: 623 TDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQTVEGLQKAAVTD--GRVHTTFQQ 680

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-------KKLISADYSQIELRIL 758
            +  TGRL+S  PNLQNIPI+TD G++IR AFI  P        + L++ADYSQIE+RI+
Sbjct: 681 NAASTGRLSSTAPNLQNIPIRTDEGRRIRGAFIVAPKVLDGVEYEGLLTADYSQIEMRIM 740

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
            H+A    L Q + +  D+HR V +E+FGV  E+V+PQMR   K +++ + YG+S F LA
Sbjct: 741 VHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYGLSRFGLA 800

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I   EA +    YF RF  +  ++         +GY ETI+GRR    +++SP  +
Sbjct: 801 KQLNISSDEAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGRRRSLPDLDSPNRT 860

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ERAA+NAPIQG+AADI + AMI++H+ L++ KL T+MLLQ+HDE++ EV   E  
Sbjct: 861 RREAAERAALNAPIQGTAADIIKIAMINIHRRLQEEKLKTRMLLQVHDEIILEVAVGERE 920

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            A +I+V  M +A    I L+VPL V +    +W+E
Sbjct: 921 AAQRILVEEMSEA----IELKVPLDVQVGWGKSWEE 952


>gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
 gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
          Length = 990

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 332/1034 (32%), Positives = 507/1034 (49%), Gaps = 124/1034 (11%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L L+DG S  +R+FYA        LS K DG+P +   GF     K L +  K    +  
Sbjct: 13  LLLIDGHSLAFRSFYAFSKGGEGGLSTK-DGVPTSVTYGFL----KALLDHCKGLEPNGL 67

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
            V FD    TFR++    YKA+R + PE     L  L  +  ++  IP     G+EADD+
Sbjct: 68  VVAFDTDVPTFRHDADAAYKAHRDEAPEAFFQDLANLQTILRESLDIPLCMAPGYEADDV 127

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A   G+ V I+S D+DL QLV  +     LY             ++  E V+ 
Sbjct: 128 LGTLANRAADAGWRVRILSGDRDLFQLVDDSRDIAVLYMGGGPYAKNSGPVEVRREGVVS 187

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--- 227
           K G+ PE++V L+ALTGDS DNIPG+ G+G KTA  LL  Y +L+ I      +++    
Sbjct: 188 KLGVTPEEVVDLKALTGDSSDNIPGVRGVGPKTAINLLAAYEHLDGIYAALEALERSGPK 247

Query: 228 -KRRENILEYAETARL---------SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
            K  + +L+ A   +L         SR L  +  ++P+      L L   +   L S L 
Sbjct: 248 AKDPKGVLKGALVGKLKDDRDNAFRSRMLAEILVNIPLP-EAPRLELGRVDREALRSSLD 306

Query: 278 ALEFTKL---INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334
            LE   L   ++R A  +  DA   +       T   +  A+  E              L
Sbjct: 307 ELELASLARQVDRFAALFSADAGAAD------ATISQEAKAVAEEGALAAPAAAGGPPDL 360

Query: 335 SDQTSKINSEQTPQKL--FLERLQKLSQ--YPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
             Q        +P+ L   ++RL   +    P+  D+ T  +N      +  +L  +G A
Sbjct: 361 QPQVI-----LSPEALAALVQRLLGCTDPAAPVALDTETTALNP-----FQAELVGLGVA 410

Query: 391 SFKIITDT--MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
             + +T+   +   H  P+A         DD   +  T    L +              E
Sbjct: 411 WGEGLTELAYIPIGHQPPVA---------DDLLSETPTPPRQLPL-------------DE 448

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIAS 507
           +L+ L  +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+  + H +  
Sbjct: 449 VLTALAPWLASAEHPKALQNAKYDRLILLRHGLPLGGVVMDTLLADYLRDA-NAKHGLEV 507

Query: 508 IAQKWLSYTR---KEILKSRKS--SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-- 560
           +AQ+ L +T     E++    S  ++P++  +      +   + +V  +L  LLR +L  
Sbjct: 508 LAQRNLGFTPTSYGELVPKGASFAAVPVEAAA-----LYCGMDVHVTRRLSPLLRRQLEE 562

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
           +   L  + + ++ P+  V++QME TGI+ID   L+++S E+   L  LE      +G +
Sbjct: 563 LGPSLPALLDGVELPLEPVLAQMEATGIRIDTAYLQELSEELGATLARLEAEARAAAGVE 622

Query: 621 FNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           FNL+SPKQLG++LF  L        +TKTG W T A  LE++   D+P++  +LE R LS
Sbjct: 623 FNLASPKQLGELLFDTLGLDRKKSRRTKTG-WSTDANVLEKLE-DDHPVVPLVLEHRTLS 680

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+KSTY D+LP+ +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+
Sbjct: 681 KLKSTYVDALPSLMEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFL 740

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
                 LISADYSQIELRIL H+     L + + N  D+H + A  +   + E V+P  R
Sbjct: 741 PQEGWSLISADYSQIELRILTHLCGEEVLVEAYRNGDDVHALTARLLL--DKEAVTPDER 798

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R  KTINF +IYG+   R A +  + +S+A D++ RY  R+P +  ++E  +      GY
Sbjct: 799 RLGKTINFGVIYGMGAQRFARETGVSQSQAKDFLSRYKQRYPKVFAFLELQERLALSRGY 858

Query: 859 VETIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADIT 900
           VETI GRR    +D             EI+   + +  +     RAA NAPIQGS+ADI 
Sbjct: 859 VETILGRRRPFAFDPSGLGRHLGKDPMEIDLEVARRGGLEAQQLRAAANAPIQGSSADII 918

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ + ++L    L  ++LLQ+HDELV E   E +     +   +ME+A    + L V
Sbjct: 919 KLAMVHLQQALSQQALPARLLLQVHDELVLEAAPEALDQVCDLTRQTMERA----VQLTV 974

Query: 961 PLKVNIKVSNNWQE 974
           PL V   V  NW E
Sbjct: 975 PLVVETGVGPNWME 988


>gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15]
          Length = 868

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/618 (38%), Positives = 361/618 (58%), Gaps = 32/618 (5%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV--- 424
           Y+ I + K++ QW+++L      +F   T ++    ++ + +           SF V   
Sbjct: 270 YSIITDQKELDQWLERLGAAELFAFDTETTSLRYMDAEIVGV-----------SFAVKPG 318

Query: 425 ETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
           E  ++ L      D  G  +     ++L  LK   EN    K+G N+KYDK VL  +GI+
Sbjct: 319 EAAYVPLG----HDYMGAPEQLDRDQVLDQLKPLLENPDLAKVGQNLKYDKNVLANHGIT 374

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQV 538
           + G  ED ML SYVL+S  + HD+ S+A  +L   + + + I       +  ++I   + 
Sbjct: 375 LEGIAEDTMLESYVLNSVATRHDMDSLAMYYLGEKTTSFESIAGKGAKQLTFNQIDLEKA 434

Query: 539 QEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L   LRPKL    KL  VYE +D P++ V+S+ME  G  I    L+Q
Sbjct: 435 APYAAEDADITLRLHQTLRPKLKETGKLAAVYEDIDLPLVPVLSRMEQRGTLISASTLRQ 494

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+++ +  LE+  ++++GE FNL S KQL  I + K+  P   K +  + +  ++  
Sbjct: 495 HSQELAERMAELEKEAHEVAGETFNLGSTKQLQAIFYDKMGLPVIKKPQRARRQQRSRCF 554

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
              N   N   + ILE R LSK+KSTY D+LP  I+ RT RVHT Y  A T TGRL+S E
Sbjct: 555 R--NSPTNTNCRVILEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSSE 612

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G++IR+AFI+P   KL++ADYSQIELRI+AH++    L + FE   DI
Sbjct: 613 PNLQNIPIRSEQGRRIRQAFIAPEGYKLVAADYSQIELRIMAHLSGDKGLLKAFEKGEDI 672

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H+  A+E+FGV+++ VS   RR AK INF +IYG+S F L+ QL + R  A +YI RYF 
Sbjct: 673 HKATASEVFGVSLDDVSSDQRRSAKAINFGLIYGMSAFGLSRQLDVERKLAQEYIDRYFE 732

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ +Y++  +     +G+VET+FGRR++  EIN+    ++   ER AINAP+QG+AA
Sbjct: 733 RYPGVLKYMDNIRKQAHDDGFVETLFGRRLYLPEINARNKQLQQAAERTAINAPMQGTAA 792

Query: 898 DITRRAMISVHK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI +RAM+ V    L++H    +M +Q+HDEL+ EV E    +A   I   +EK      
Sbjct: 793 DIIKRAMVDVENWLLKEHADEARMTMQVHDELILEVKE----SALDKIRSGLEKRMSAAA 848

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL V   V +NW E
Sbjct: 849 ELDVPLLVEAGVGDNWDE 866



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 1/238 (0%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+   ++   S   V+FD    TFR+++Y +YKANRP +PE L  Q+  +    +A G+
Sbjct: 4   MLRRLEQDFPGSKMVVVFDAKGKTFRHDLYEEYKANRPPMPEDLACQIEPIHEIVKAMGL 63

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + + G EADD+I T    A  +G  V + + DKD+ QLVS    L +T+ E ++D + 
Sbjct: 64  PLLTVTGVEADDVIGTLANEATSKGIDVVVSTGDKDMAQLVSDHVTLINTMTETRMDRDG 123

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V++K+G+ PE++V   AL GD +DNIPG+   G KTA   LQ Y NL+N++ +A  IK  
Sbjct: 124 VVEKFGVTPEQIVDYLALVGDKVDNIPGVNKCGPKTAVKWLQSYDNLDNVIEHADEIK-G 182

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           K  E + +  ET  LSR+L  +RTDV +   LE L L + +  +L+   +  EF   I
Sbjct: 183 KIGEYLRDATETLPLSRELATIRTDVELDFGLEDLKLREQDDQQLLELFREYEFRSWI 240


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 243/618 (39%), Positives = 360/618 (58%), Gaps = 31/618 (5%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET- 426
           Y  I+    + +W+ KL+     +    T ++D   ++ + +           SF VE  
Sbjct: 323 YDTILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGL-----------SFAVEAG 371

Query: 427 --IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
              ++ L+     D  G    L K+  L  L+   E+    K+G N+KYD  VL   GI 
Sbjct: 372 KAAYLPLA----HDYVGAPQQLDKQTALEKLRPILEDAKLKKVGQNLKYDISVLANAGIQ 427

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           ++G   D ML SYV +S  S HD+  +A K+L +     ++I       +  ++I     
Sbjct: 428 LKGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFNQIPLETA 487

Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L   L P+L  E +L  V+  ++ P+I ++S +E  G+ ID  LL Q
Sbjct: 488 APYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQ 547

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+++ +  LE   YD++GEKFNLSSPKQL  + F KL +P   KT  G   T  + L
Sbjct: 548 QSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVL 607

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            ++   D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+  TGRL+S E
Sbjct: 608 VELAL-DFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGRLSSSE 666

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F    DI
Sbjct: 667 PNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDI 726

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI  YF 
Sbjct: 727 HRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFA 786

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAAINAP+QG+AA
Sbjct: 787 RYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAA 846

Query: 898 DITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI ++AMIS+   ++ D +    M++Q+HDELVFEV  ++  T    +   M KA     
Sbjct: 847 DIIKKAMISIADWIKTDTQGEITMIMQVHDELVFEVDADKAETLKLKVCELMAKAA---- 902

Query: 957 NLRVPLKVNIKVSNNWQE 974
           NL V L     + +NW +
Sbjct: 903 NLDVELLAEAGIGDNWDQ 920



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 164/291 (56%), Gaps = 13/291 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL  SR +   SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    TFRN++Y +YKA+RP +P+ L  Q+ PL R+  +A G+P I I G EADD+I T
Sbjct: 62  FDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRI-IRALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I++ A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +  +LS +L  ++TDV +      L  +  +   LI     +EF + +  V
Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELEAKPADRDELIKCYGEMEFKRWLAEV 291


>gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803]
 gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803]
          Length = 996

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 321/1030 (31%), Positives = 512/1030 (49%), Gaps = 107/1030 (10%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K DG P +   GF   L    +  + E +A   
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGFLKALLDNSKGLKPEGVA--- 65

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
            + FD    TFR++   +YKA+R   PE+    L  L  +  +   +P     G+EADD+
Sbjct: 66  -IAFDTAEPTFRHQADANYKAHRDVAPEVFFQDLDQLQTILRERLKLPLCLAPGYEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A   G+ V I+S D+DL QLV        LY        +     I+   V+ 
Sbjct: 125 LGTLANRAAGSGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPTLINEAGVVA 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL----------IN 220
           K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL+E  +L+ +             
Sbjct: 185 KLGVMPNKVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENNDLDGVYRVLEEVEAEGPK 244

Query: 221 ASRIKQKKRRENILEY-AETARLSRKLVMLRTDVPITIPLEHLI-LEDCNGPRLISFLKA 278
           ASR   K   +  L    + A LSR L  +  D+P+  P E ++ L   +G  L   L+ 
Sbjct: 245 ASRGAVKGALKGKLSADRDNAYLSRHLAEILVDIPL--PEEPVLELGPVDGEGLEEQLQD 302

Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
           LE   L+ ++ +               + T  + G+     +  + T K ++ +      
Sbjct: 303 LELNSLVRQIPSF--------------VATFSSGGLTANAHLLEEATAKKAKGAP----- 343

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITD 397
           SK    ++ +         ++      +   ++V+T++ +Q  +Q+L    + S  +  D
Sbjct: 344 SKAGVAESGEAGTDPAATGVTSPSTRPELAPQVVSTREQLQSLMQQLMGCTNPSEPVAVD 403

Query: 398 T----MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           T    ++ F ++ + I +       D ++      I +  HT  D        + +L  L
Sbjct: 404 TETTDLNPFKAQLVGIGVCWGAGLSDLAY------IPVG-HT--DPALTQLPLEVVLEQL 454

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW 512
             +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+  + H +  +A++ 
Sbjct: 455 APWLSSPSHPKALQNAKYDRLILLRHGLVLGGVVMDTLLADYLRDAA-AKHSLDGMAERD 513

Query: 513 LSYTRKEI------LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EK 564
              T           K  K+S   +  SD Q   +   + ++  +L + LR +L    E+
Sbjct: 514 YGITPTLFSDLVGKAKDGKASCFAEVPSD-QAALYCAMDVHLTRRLAIDLRQQLQASGEQ 572

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L ++ ++++ P+  V++ ME TGI+ID   L  +S E+ + L  LE +    +G  FNL+
Sbjct: 573 LTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKEMGETLTRLEADAKQAAGVDFNLA 632

Query: 625 SPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           SPKQLG++LF  L        +TKTG + T A  L+++   D+P++  +LE R LSK+KS
Sbjct: 633 SPKQLGELLFETLGLDRKKSRRTKTG-YSTDATVLDKL-ADDHPVVPLVLEHRVLSKLKS 690

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+    
Sbjct: 691 TYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEH 750

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             L+SADYSQIELRIL H++    L Q + +  D+H + A  +     + VS   RR  K
Sbjct: 751 WTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLL--EKDDVSADERRLGK 808

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           TINF +IYG+   R A +  + +++A +++ +Y  R+P +  ++E  +      GYVETI
Sbjct: 809 TINFGVIYGMGAQRFARETGVSQTDAKEFLSKYRERYPKVFAFLELQERLALSRGYVETI 868

Query: 863 FGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAM 904
            GRR   H+D             EI+   + +  +     RAA NAPIQGS+ADI + AM
Sbjct: 869 MGRRRPFHFDRNGLGRLLGKDPFEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKLAM 928

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I +  +L+ H L  ++LLQ+HDELV EV    +     ++V +MEKA    + L VPL  
Sbjct: 929 IQLQAALQQHSLPARLLLQVHDELVLEVEPSALDDVKALVVSTMEKA----VELSVPLVA 984

Query: 965 NIKVSNNWQE 974
              V +NW E
Sbjct: 985 ETGVGSNWME 994


>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
 gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
          Length = 898

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/620 (37%), Positives = 362/620 (58%), Gaps = 32/620 (5%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE-- 425
           Y  ++    +QQW+Q+L      +F + T +++   ++ + +           SF VE  
Sbjct: 300 YETVLEEAGLQQWLQRLAGAEVFAFDLETTSLNYMDAEIVGL-----------SFAVEPA 348

Query: 426 -TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++ ++ H  Q           +L  L+   E+    K+G N+KYD  VL  Y I++R
Sbjct: 349 RAAYVPVA-HIGQ-GVSPQLERGHVLEQLRPLLEDPRRAKLGQNLKYDMSVLAHYDIALR 406

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540
           G   D ML SY+LDS  + HD+ S+A K+L +     +++       +  D+++  +  E
Sbjct: 407 GVRFDTMLESYILDSTATRHDMDSLALKYLGHRTIKFEDVAGKGAKQLTFDQVAIERATE 466

Query: 541 HAIENSNVILQLWLLLRPKL----IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +A E++++ L+L  +L PKL      E++ H  E    P++ V+S+ME TG+ + ++LL 
Sbjct: 467 YAAEDADIALRLHRVLYPKLRQLPGPERVFHAIE---MPLLPVLSRMERTGVLVSRELLA 523

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             SAE+++ L  +E ++Y  +G +FNL SPKQ+  +L+ +   P  AKT  G   +TA+ 
Sbjct: 524 AQSAELAQRLAEIEASVYRAAGCEFNLGSPKQIQAVLYDRQGLPVLAKTPKGA-PSTAES 582

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + Q      P+ + ILE R L+K+KSTY D LP  I+ RT RVHT Y  A   TGRL+S 
Sbjct: 583 VLQELAATYPLPRMILEHRALAKLKSTYTDKLPLLIHPRTGRVHTSYRQAVAATGRLSSS 642

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP+++  G++IRR FI+    +L++ DYSQ+ELRI+AH +    L++ F    D
Sbjct: 643 DPNLQNIPVRSPEGRRIRRGFIARQGYRLLAVDYSQVELRIMAHFSGDERLHRAFAAGED 702

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+F   +E+V+ + RR AK INF +IYG+S + LA QL I R  A  Y++RYF
Sbjct: 703 IHRATAAEVFATALEQVTAEQRRAAKAINFGLIYGMSAYGLARQLGIERDAAQHYVERYF 762

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  ++E+ +   R+  YVET+FGRR++  EIN+  +  R   ER AINAP+QGSA
Sbjct: 763 ERYPGVKAFMERIRREARERQYVETVFGRRLYLPEINASNAQRRQAAERTAINAPMQGSA 822

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAM+ V + L+  +    M+LQ+HDELVFEVP  ++   ++ I   M  A     
Sbjct: 823 ADIIKRAMVRVDQWLQSEREDVFMVLQVHDELVFEVPTPDVQAVAERIRAFMVGAA---- 878

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V     +NW+E +
Sbjct: 879 ELSVPLTVEAGWGDNWEEAH 898



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/252 (42%), Positives = 151/252 (59%), Gaps = 8/252 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA+YA P L+    G P  A+ G  +ML KLL     E   ++F V+FD
Sbjct: 8   LILVDGSSYLYRAYYALPPLTTPA-GEPTGAVYGVVSMLRKLL----AEYDTAYFGVVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               TFR+E++  YKANR  +P+ L  QL PL R+   A G+  IEI+G EADD+I T  
Sbjct: 63  AKGKTFRDELFEAYKANRAPMPDELRVQLEPLKRIVC-ALGLSRIEIEGVEADDVIGTLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G    I + DKD+ Q+V+    L +T+    +D   V  K+G+PPE+MV   AL
Sbjct: 122 VRASVAGLRTIIATGDKDMAQIVNDNVVLLNTMSGTWLDAAAVQDKFGVPPERMVDYLAL 181

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD++DNIPG+P +G KTAA  L +YG+L+ +L     IK K   E++ E+ E   LSR+
Sbjct: 182 VGDAVDNIPGVPRVGPKTAAKWLGQYGSLDALLECVDEIKGKV-GESLREHLEQLALSRE 240

Query: 246 LVMLRTDVPITI 257
           L  +R D+ + +
Sbjct: 241 LATIRCDLDLDL 252


>gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 932

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 289/984 (29%), Positives = 485/984 (49%), Gaps = 96/984 (9%)

Query: 20  FYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYP 78
           F+A P+ +     G   NA+ GF  ML +++     +    H AV FD    TFRN + P
Sbjct: 11  FFALPVENFSTSAGQATNAVWGFATMLSQVIDAEHPD----HLAVAFDVKGGTFRNTMLP 66

Query: 79  DYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII 138
            YK  R   PE LL QLPL++    A G+  IE  G+E DD+I T   + +K G+   ++
Sbjct: 67  QYKGTRDAAPEDLLTQLPLIQRMLTALGVTFIEKPGYEGDDVIGTLASMGDKAGYRTLVL 126

Query: 139 STDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVCLQALTGDSIDN 192
           S D+D  QL++   T LY        D++H     V++K+ + PE+   L AL G++ DN
Sbjct: 127 SGDRDAFQLINDNITVLYP--GHHFKDLKHMTPDAVVEKYHVTPEQYPDLAALRGETADN 184

Query: 193 IPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAETARLSRKLVML 249
           IPG+PG+G   AA  +  YG L+ I+ +A  I  KK    R NI    +  +L+R +  L
Sbjct: 185 IPGVPGVGDGFAAKWINLYGGLDQIIEHADEIGGKKGEALRANI----DQVKLNRSVNAL 240

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAANIEPVVLDINT 308
             D+ + + +E L     +  +L      LEF  +  NRV  T++      +PV  D + 
Sbjct: 241 VRDLDLGVSIEDLTFGQVDANQLNQLFTRLEFGIRTKNRVLRTFNAGKPTNDPVQQDESG 300

Query: 309 --------TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                   T +   A+E  +  +  +       L D+  +I  + TP    ++  ++ +Q
Sbjct: 301 KLEIPQYETVDSPEALEAWVRDNLPMPNGH---LHDE-REIAPKTTPSGFAIDHTKQCAQ 356

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              ++              WV ++E             M A H K    AI T       
Sbjct: 357 SVAHS--------------WVLQVEGESKPGNAAYASLMIAAHDK----AIRT------- 391

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                                 N + +++ S L+   +  H   + H  K    +L   G
Sbjct: 392 ----------------------NRVDRDMASQLQTVLDEHHQSMVVHGYKEQSHLLESVG 429

Query: 481 ISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSRKSSIPIDKISDS-Q 537
           +++ +   D  L  Y++     +  +   A  +L  +  ++   + + ++  D+  DS Q
Sbjct: 430 VALPKPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHIEEQSEGATQGTLDFDEPDDSAQ 489

Query: 538 VQEHAIENSNVILQLWLL-LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             ++ +     I+ L    L   L   +   + E ++ P+  V+  ME  G Q+D + L 
Sbjct: 490 RNDNQLPRHTAIVGLLARKLADSLDQREQFSLLESVEIPVSRVLYGMEHAGAQVDMNRLM 549

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +  +++ +    +E  +  +GE+ NL SPKQL  ILF  +      KTKTG + T A  
Sbjct: 550 SMREQLAADANYAQETAWQYAGERVNLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAAA 609

Query: 657 LEQI---NCGDN---PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           L+ +   +CG++     +  +L  R+ +K+K     +L +  N+   R+HT +      T
Sbjct: 610 LQVLRDRSCGNDRACQFLDALLLHREKNKLKQI-VQTLIDATNRSDGRIHTTFEQTVAAT 668

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A ++    L +
Sbjct: 669 GRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIE 728

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  D H+ VA+ ++GV +++++P  R H K +++ + YG+S + L+ QL I   EA 
Sbjct: 729 AFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAYGLSTYGLSQQLGIKPGEAE 788

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
              ++YF  F  +HEY+E   +  R+ GY ETI+GRR ++  + SP  ++R+  ERAA+N
Sbjct: 789 SLKRQYFATFGKVHEYLESLVSSAREKGYTETIYGRRRYFPGLKSPNRAVRDAAERAALN 848

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AMI    +L +  LA++++LQIHDELV EV   E    + ++  +ME
Sbjct: 849 APIQGSAADIMKIAMIRADDALREAGLASRIILQIHDELVVEVAPGEAERVTALVKDAME 908

Query: 950 KACLPKINLRVPLKVNIKVSNNWQ 973
            A    +++ VPL V+  + ++WQ
Sbjct: 909 HA----VDMAVPLDVSTGIGSDWQ 928


>gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
          Length = 950

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 290/990 (29%), Positives = 482/990 (48%), Gaps = 82/990 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++     +    H AV F
Sbjct: 16  LLVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDAEHPD----HLAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRN + P YK  R   PE LL QLPL++    A G+  IE  G+E DD+I T  
Sbjct: 72  DVKGGTFRNTMLPQYKGTRDAAPEDLLTQLPLIQQMLDALGVTFIEKPGYEGDDVIGTLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + ++ G+   ++S D+D  QL++   T LY        D++H     V++K+ + PE+ 
Sbjct: 132 SMGDEAGYRTLVLSGDRDAFQLINNNITVLYP--GHHFKDLKHMTPDAVVEKYHVTPEQY 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236
             L AL G++ DNIPG+PG+G   AA  +  YG L+ I+ +A  I  KK    R NI   
Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINLYGGLDQIIEHADEIGGKKGEALRANI--- 246

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCD 295
            +  +L+R +  L  D+ + + +E L     +  +L      LEF  +  NRV  T++  
Sbjct: 247 -DQVKLNRSVNALVRDLDLGVSIEDLTFGQVDANQLNELFTKLEFGIRTKNRVLRTFNAG 305

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                 V  D ++        + EI    TI + +     +  ++ N + T + L  ER 
Sbjct: 306 KPTNNLVPQDESS--------KLEIPEYETIDSPE---ALESWAQSNLQTTNKHLHDERE 354

Query: 356 QKLSQYPINND-SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                 P      +TK         WV ++E          +  M A   K I I     
Sbjct: 355 TAPKTTPSGFAIDHTKKCAKSVAHSWVLQVEGESKPGNAAYSSLMIASQGKAIRI----- 409

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                                       N + +++ S L+   +  H   + H  K    
Sbjct: 410 ----------------------------NHIDRDMASQLQTLLDEYHQSMVVHGYKEQSH 441

Query: 475 VLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSRKSSIPIDK 532
           +L   G+ +     D  L  Y++     +  +   A  +L  +  ++   + + ++  D+
Sbjct: 442 LLGSAGVKLPEPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHVEEQSESATQGTLDFDE 501

Query: 533 ISDS--QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +S  Q  +    ++ ++  L   L   L   +   + E ++ P+  V+  ME  G Q+
Sbjct: 502 PEESVQQKDDQLPRHTAIVGLLARNLSNSLDQREQFALLESVEIPVSRVLYGMEHAGAQV 561

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D + L  +  +++ +    +E  +  +G++ NL SPKQL  ILF  +      KTKTG +
Sbjct: 562 DMNRLMNMREQLASDANHAQETAWQYAGKRVNLQSPKQLQKILFEDMGLKPTKKTKTGSY 621

Query: 651 KTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            T A  L+ +      N      +  +L  R+ +K+K     +L +  N    R+HT + 
Sbjct: 622 TTNAAALQTLRDRSYDNDSACQFLDALLLHREKNKLKQI-VQTLIDATNGSDGRIHTTFE 680

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAK 763
                TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A ++ 
Sbjct: 681 QTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSG 740

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + F +  D H+ VA+ ++GV +++++   R H K +++ + YG+S + L+ QL I
Sbjct: 741 DEALIEAFRSGRDFHKYVASLVYGVPVDEITSDQRSHVKAMSYGLAYGLSTYGLSQQLGI 800

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              EA    ++YF  F  +HEY+E   +  R+ GY ETI+GRR ++  + SP  ++R+  
Sbjct: 801 KPGEAESLKQQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAVRDAA 860

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAA+NAPIQGSAADI + AMI    +L +  LA++++LQIHDELV E+   E   A+ +
Sbjct: 861 ERAALNAPIQGSAADIMKIAMIRADDALHESGLASRIILQIHDELVVEIAPGEAEQATAL 920

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +  +ME A    +++ VPL V+  + ++WQ
Sbjct: 921 VKDAMEHA----VDMAVPLDVSTGIGSDWQ 946


>gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50]
 gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50]
          Length = 904

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/531 (40%), Positives = 331/531 (62%), Gaps = 11/531 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506
           E+++ L+ + E+    K+ H+ KYD  V    G+S+ G  ED ML +YVL+S R    + 
Sbjct: 379 EVIARLRGWLEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESHRGV-GLN 437

Query: 507 SIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            +AQ++L  +    +++       I  D+++ +    ++ E+S+  LQL  +LRP++  +
Sbjct: 438 DLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVALAGHYSCEDSDFTLQLHEVLRPRVAED 497

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           + L     L+  +  V++ +E  G+++D   L + S ++ + +L+LE+  Y+L+G+ FNL
Sbjct: 498 EGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQRAYELAGQPFNL 557

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG+ILF ++  P   KT  G   T  + L ++   D P+ + +LE+R LSK+KST
Sbjct: 558 NSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKL-AQDYPLPQVLLEYRGLSKLKST 616

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D LP  IN  T RVHT YS A+ +TGRLAS +PNLQNIP++T+ G+++R AFI+    
Sbjct: 617 YTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAE-QG 675

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           KL+SADYSQIELRI+AH++    L + F    DIHR  A+E+FGV + +V  + RR AK 
Sbjct: 676 KLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKA 735

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           INF +IYG+  F LA+ L I R  A  YI RYF R+PG+  Y++ T+   R  GYVET+F
Sbjct: 736 INFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVF 795

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR+   +I +     R   ERAAINAP+QG+AAD+ + AM++V   L+  +L T+M++Q
Sbjct: 796 GRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLDAERLRTRMIMQ 855

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDELV EVP+EE+   ++ +   M         LRVPL   + +  NW++
Sbjct: 856 VHDELVLEVPDEELAAVAEALPRLMCDVA----TLRVPLVAEVGMGTNWEQ 902



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/250 (39%), Positives = 148/250 (59%), Gaps = 6/250 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+Q+ + E    +   +FD
Sbjct: 5   LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVQDHKAE----YAVCVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++PDYK++RP +PE L  Q+  +  A +A G P + I+G EADDII T   
Sbjct: 60  ARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLAR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G    + + DKDL QLV P   L +T+  E +D+  V  K+G+PPE++V    L 
Sbjct: 120 QASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNNKFGVPPERIVDYLMLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTA   L E+G+++ ++  A  +K      N+ E      L+R L
Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVA-GNNLREAIPNFPLTRTL 238

Query: 247 VMLRTDVPIT 256
           + ++ D  +T
Sbjct: 239 LTVKCDCDLT 248


>gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
          Length = 896

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 310/979 (31%), Positives = 514/979 (52%), Gaps = 101/979 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F++R+++A P L + H+G P   + GF  ++ +L ++  K+ +   FA+  D
Sbjct: 6   LTIIDTFGFLFRSYFALPPL-KNHEGFPTGLLTGFAKLIMQLHKDYPKDYLV--FAL--D 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR +I P YKANRP++P+ L  QL +     +  G   I I+GFEADD+IA+   
Sbjct: 61  SKGENFRKQIDPLYKANRPEVPQDLKLQLEVAIRWVEDMGFKNISIEGFEADDVIASINK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              K    V IIS DKDL QL+   T L++  K+E+I  E   +K+G+ P + V  Q++ 
Sbjct: 121 QVNKLDVNVRIISHDKDLYQLIDKDTFLFNPSKKEEIREEECKEKYGVYPSQFVDYQSIV 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DN+PG+ GIG K A  LL  +G+L++I  +   I QK+ RE +    + A  SR+L
Sbjct: 181 GDSADNVPGVKGIGAKGAVNLLNNFGSLDSIYQHLDEIPQKRTRELLSAAKDDAYRSREL 240

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
                     + L   +LED +                        +C+     P++  +
Sbjct: 241 ----------VKLRDDLLEDFD----------------------LSECEMPQDSPLLRIL 268

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQT-SKINSEQTPQ-KLFLERLQKLSQYPIN 364
           ++          E D ++ +K    + ++ +  S+I S++  Q K F+ +      + I+
Sbjct: 269 DSLR--------EYDLNSVLKKLHKNPITKKKISQIESQENEQEKKFIYK-----THLID 315

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           NDS         ++++   L      SF   T ++D   +K +  + S ++  D     +
Sbjct: 316 NDS--------KLKEFFSTLPKESIFSFDTETTSLDVRKAKIVGFSFS-VNGVDCYYIPI 366

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISM 483
              ++ +    S +   +          +++ F++++   IGHN+KYD  +L   +   +
Sbjct: 367 AHNYLGVESQVSLECARE---------CIEQIFQSQYV--IGHNLKYDLEILKTNFDFVL 415

Query: 484 RGF---EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ- 539
             F    D ML++++L S  +  ++  + +K+ ++   E++  +      +  S+  +Q 
Sbjct: 416 EDFSKVRDSMLLAWLLQSD-TLCNLDFLMKKYFNH---EMIHYKDIVGKNENFSNILIQH 471

Query: 540 --EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E+A E++    QL+  LR  L+ E LL + ++++ P I  +  ME++GI+ID +    
Sbjct: 472 ACEYASEDAAACYQLYFKLRG-LMDESLLEIAQKVEFPFIQSLMNMELSGIKIDLEYFLG 530

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           ++AE  + L  + E I+ L+ ++FNL+SP+QL  ILF  LK  +  KTK+G + T+   L
Sbjct: 531 LNAETREKLHQISEEIFVLANKRFNLNSPQQLASILFDDLKLEASKKTKSG-YSTSELVL 589

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASL 716
             +    +PII  ILE+R+  K+ STY + L  H     + R++T +    T TGRL+S 
Sbjct: 590 NSL-YDSHPIIPKILEYRESFKLYSTYIEPLIEHAKSDLEHRIYTSFMQTGTSTGRLSSK 648

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIP+KT  G++IR+ FI+     LIS DYSQIELR+LAH ++   +   F    D
Sbjct: 649 NPNLQNIPVKTLEGRRIRKGFIAKENCLLISLDYSQIELRLLAHFSQDKAMIDAFLQDAD 708

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A +IFG   E+++ + R  AK+INF +IYG+ P +L+  L+I   EA  YI+ YF
Sbjct: 709 IHLETAKKIFG---EEMAQEKRAVAKSINFGLIYGMGPKKLSETLKINFQEAKTYIQNYF 765

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP I  ++++ + F+ +NGY +T+ GR   +D     +   +    R  INA  QGSA
Sbjct: 766 TSFPMIKNFLKEQEEFILENGYSKTLLGRMRKFD-FEGVQEYQKAAFLREGINAIFQGSA 824

Query: 897 ADITRRAMISV-HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           ADI + AM  + H SLE     +K+LLQ+HDEL+FE P+E  +  ++ I   ME      
Sbjct: 825 ADIIKMAMNKIMHSSLE-----SKLLLQVHDELIFEAPKEIASKEAKKIALIMENIA--- 876

Query: 956 INLRVPLKVNIKVSNNWQE 974
             LRVPLK +I +  NW E
Sbjct: 877 -TLRVPLKCSISIGENWGE 894


>gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9]
          Length = 960

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 294/989 (29%), Positives = 491/989 (49%), Gaps = 64/989 (6%)

Query: 7   LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L ++DG S  +RAFYA P    S K DG   NA+ GF  ML +++ + + + +     V 
Sbjct: 12  LLVIDGHSLAFRAFYALPAENFSAK-DGQATNAVYGFFTMLSQVIASQKPDLLG----VA 66

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN++   YK  R   PE L+ Q+PL++   +AFG+  +  QG+E DD+IAT 
Sbjct: 67  FDVKGGTFRNKMLTQYKGTREAAPEELISQIPLIQDMLEAFGVTYVTKQGYEGDDVIATL 126

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDT--VKEEKIDIEHVIK-KWGIPPEKMV 180
             + E   +   ++S D+D  QL+    T LY     KE K      ++ K+ + P +  
Sbjct: 127 ATMGEHADYRTYVLSGDRDAFQLIDDDITVLYPGYHFKELKAMTPQAVEDKYHVTPRQYP 186

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL G++ DNIPG+PG+G   AA  + +YG L+ ++ +A  IK KK  + + E  E  
Sbjct: 187 DLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDGVIEHADEIKGKKG-DALRESIEQI 245

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI-NRVATTYDCDAANI 299
           RL+RK+  L  D+ + + +  L     +  +       L F   I +++  T++      
Sbjct: 246 RLNRKVNALVRDLDLGVDIADLTFGKVDPAKAEELFNQLNFGARIRSKLLKTFNAGDPG- 304

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL--FLERLQK 357
           +PV    +  E      E E D D +  T +  S+  Q   ++    P  L  + ++   
Sbjct: 305 QPVAKKASDAER--FEFEGEFD-DGSFDTPE--SVRVQEPVVDEIDAPASLEAWAQQHCP 359

Query: 358 LSQYPINNDSYTKIVNTKDIQ--QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           ++     + +   +V   D Q  Q V+ +E  GS S         +   KP   +IS L 
Sbjct: 360 IASGKSISSTTLDVVGEYDAQSQQCVEAVE--GSWSL------FASGSPKPGRSSISGLA 411

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH-NIKYDKL 474
              D       + +D   H  Q       +     + L      EH   +G  N++   +
Sbjct: 412 LMADG----HAVVVD--PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLGAVNLRLPMV 465

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           +            D  L  Y++D       +   A  +L    +E+ ++ + ++ I  + 
Sbjct: 466 LF-----------DTNLAGYLIDPDFQGGSLQDCADHFLHRHAEEVTETEQGTLDI-GMD 513

Query: 535 DSQVQEH--AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           D + +     + N+ ++  L   L  +L       +   ++ P    +  ME TG  +D+
Sbjct: 514 DERAERDRKVVRNAAIVSLLARTLARQLEQRCQYSLLRDIELPTSVALFHMEHTGASVDR 573

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L ++    +     +E+  Y+ +G + NL SPKQLG +LF ++      KTK G + T
Sbjct: 574 ARLDELLEMFTDESNRMEQICYEAAGHEVNLQSPKQLGVVLFEEMGLNPTKKTKRGSYST 633

Query: 653 TAQDLEQINC----GDNP--IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            A+ L  +      G  P   +  +L  R+++K++     +L + IN R  R+HT ++  
Sbjct: 634 NAKALTTLYATSEEGSRPNEFLGALLRHREVNKLRQI-VQTLIDAINPRDGRIHTTFTQT 692

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765
              TGRL+S++PNLQNIP +   G+ IR AF+       L+SADYSQ+ELRI+A ++   
Sbjct: 693 VAATGRLSSVDPNLQNIPNRNATGRDIRSAFVPGEGFADLLSADYSQVELRIMADLSGDE 752

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F++  D HR VA+ ++G+ +++V+P  R H K +++ + YG+S + L+ QL IP 
Sbjct: 753 ALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYGLSTYGLSQQLGIPS 812

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EAA    RYF  F  +H+Y+E   +  R  GY +T+FGRR ++  + S     R+  ER
Sbjct: 813 KEAAALRSRYFQTFGKVHDYLESLVSNARNTGYTQTMFGRRRYFPALTSANRVARDAAER 872

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+NAPIQG+AADI + AMI V ++L D  L ++++LQIHDELV E+   E    ++++ 
Sbjct: 873 GALNAPIQGTAADIMKIAMIRVDRALRDGNLNSRIVLQIHDELVVELAPGEEKRVTELVR 932

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +ME A    +N+ VPL V+  V ++WQ+
Sbjct: 933 DAMEHA----VNIAVPLDVSTGVGSDWQQ 957


>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
 gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
          Length = 904

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/531 (40%), Positives = 330/531 (62%), Gaps = 11/531 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506
           E+++ L+ + E+    K+ H+ KYD  V    G+S+ G  ED ML +YVL+S R    + 
Sbjct: 379 EVIARLRGWLEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESHRGV-GLN 437

Query: 507 SIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            +AQ++L  +    +++       I  D+++      ++ E+S+  LQL  +LRP++  +
Sbjct: 438 DLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVPLAGHYSCEDSDFTLQLHEVLRPRVAED 497

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           + L     L+  +  V++ +E  G+++D   L + S ++ + +L+LE+  Y+L+G+ FNL
Sbjct: 498 EGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQRAYELAGQPFNL 557

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG+ILF ++  P   KT  G   T  + L ++   D P+ + +LE+R LSK+KST
Sbjct: 558 NSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKL-AQDYPLPQVLLEYRGLSKLKST 616

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D LP  IN  T RVHT YS A+ +TGRLAS +PNLQNIP++T+ G+++R AFI+    
Sbjct: 617 YTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAE-QG 675

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           KL+SADYSQIELRI+AH++    L + F    DIHR  A+E+FGV + +V  + RR AK 
Sbjct: 676 KLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKA 735

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           INF +IYG+  F LA+ L I R  A  YI RYF R+PG+  Y++ T+   R  GYVET+F
Sbjct: 736 INFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVF 795

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR+   +I +     R   ERAAINAP+QG+AAD+ + AM++V   L+  +L T+M++Q
Sbjct: 796 GRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLDAERLRTRMIMQ 855

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDELV EVP+EE+   ++ +   M         LRVPL   + +  NW++
Sbjct: 856 VHDELVLEVPDEELAAVAEALPRLMCDVA----TLRVPLVAEVGMGTNWEQ 902



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/250 (39%), Positives = 148/250 (59%), Gaps = 6/250 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+Q+ + E    +   +FD
Sbjct: 5   LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVQDHKAE----YAVCVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++PDYK++RP +PE L  Q+  +  A +A G P + I+G EADDII T   
Sbjct: 60  ARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLAR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G    + + DKDL QLV P   L +T+  E +D+  V  K+G+PPE++V    L 
Sbjct: 120 QASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNSKFGVPPERIVDYLMLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTA   L E+G+++ ++  A  +K      N+ E      L+R L
Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVA-GNNLREAIPNFPLTRTL 238

Query: 247 VMLRTDVPIT 256
           + ++ D  +T
Sbjct: 239 LTVKCDCDLT 248


>gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917]
 gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917]
          Length = 996

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 322/1037 (31%), Positives = 516/1037 (49%), Gaps = 121/1037 (11%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L L+DG S  +R+FYA        L+ K DG P +   GF   L    +  R   +A   
Sbjct: 10  LLLIDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGFLKALLDHCKGLRPSGVA--- 65

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI-PAIEIQGFEADDI 120
            + FD    TFR+E   +YKA+R   PE+    L  ++   +     P     G+EADD+
Sbjct: 66  -IAFDTAEPTFRHEADANYKAHRDVAPEVFFQDLEQLQQILRQQLRLPLCLAPGYEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A  +G+ V I+S D+DL QLV        LY              I+   V  
Sbjct: 125 LGTLANRAANDGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKNSGPSLINEAGVEA 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228
           K G+ P  +V L+ALTGDS DNIPG+ G+G KTA  LL+E G+L+ +    + ++ +  K
Sbjct: 185 KLGVTPASVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENGDLDGVYQALAEVEAEGPK 244

Query: 229 RRENILEYA---------ETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLISFLKA 278
                ++ A         + A LSRKL  +  D+P+  P E  L L   +   L + L+ 
Sbjct: 245 ASRGAIKGALKGKLSADRDNAYLSRKLAEILVDIPL--PEEPDLDLGTVDADGLSARLQE 302

Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEI--------DRDTTIKTSQ 330
           LE   L+ ++                 + T  + G+A    +         +DT  + + 
Sbjct: 303 LELNSLVRQIPAF--------------VATFSSGGLAANGHLLGQVGQVQVQDTGTEGAT 348

Query: 331 FSSLSDQTSKINSEQTPQKLFLE-RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS 389
              ++  TS      TPQ +  E +L+ L           +++  +D  Q V        
Sbjct: 349 EGVVAPATSDSLPLLTPQLIRTEHQLKAL---------IDRLLLCRDPAQPV-------- 391

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE- 448
            +    T  ++ F ++ + + +    + DD ++ +       +  + +DS+    L  + 
Sbjct: 392 -ALDTETSDLNPFKAQLVGVGVCWGPELDDLAY-IPVGHRPSAEPSLEDSSAIQQLPLDT 449

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIAS 507
           +L+ L  +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+  + H + +
Sbjct: 450 VLAQLAPWLASAEHPKALQNAKYDRLILLRHGLPLGGVVMDTLLADYLRDAA-AKHGLDA 508

Query: 508 IAQKWLSYTRKEIL--------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           +A++   Y  +  L        K  K+S    ++  +Q   +   + ++  +L L LR +
Sbjct: 509 MAER--DYGIQPTLFSDLVGKAKDGKASC-FAEVEINQAALYCGMDVHLTRRLALDLRQQ 565

Query: 560 LIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
           L     +LL + ++++ P+  V++ ME TGI+ID   L  +S E+++ L  LE      +
Sbjct: 566 LAAMGPRLLPLLDQVELPLEPVLALMEATGIRIDHPYLAALSTEMAQTLERLETEAKQAA 625

Query: 618 GEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           G +FNL+SPKQLG++LF  L        +TKTG + T A  LE++   D+P++  +LE R
Sbjct: 626 GMEFNLASPKQLGELLFDTLGLDRKKSRRTKTG-YSTDATVLEKLEQ-DHPVVPLVLEHR 683

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            LSK+KSTY D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+
Sbjct: 684 TLSKLKSTYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRK 743

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF+     +L+SADYSQIELRIL H++    L Q + +  D+H + A  +     + V+ 
Sbjct: 744 AFLPQAGWQLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLL--EKKAVTA 801

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR  KTINF +IYG+   R A +  + +++A +++ +Y  R+P +  ++E  +     
Sbjct: 802 DERRLGKTINFGVIYGMGAQRFARETGVSQAQAKEFLSKYKERYPKVFAFLELQERLALS 861

Query: 856 NGYVETIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAA 897
            GYVETI GRR   H+D             EI+   + +  +     RAA NAPIQGS+A
Sbjct: 862 RGYVETILGRRRPFHFDRNGLGRLLGKDPLEIDLEVARRGGMEAQQLRAAANAPIQGSSA 921

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI +  +LE   L  ++LLQ+HDELV EV    +    Q++V +ME+A    I 
Sbjct: 922 DIIKLAMIQLQAALEQQSLPARLLLQVHDELVLEVDPTALERVRQLVVTTMEQA----IQ 977

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V   V  NW E
Sbjct: 978 LSVPLVVETGVGANWME 994


>gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 542

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/529 (41%), Positives = 331/529 (62%), Gaps = 12/529 (2%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIAS 507
           +L+ LK + EN   LK+  +IKYD+ V   +GI ++G+  D ML SYVL++ +  H +AS
Sbjct: 17  VLAKLKPWLENPQALKLVQHIKYDRHVFANHGIEVQGYAHDTMLQSYVLEADKP-HGLAS 75

Query: 508 IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-E 563
           +A++ L  +    +++     + I  D++  ++  E+A E+S+  L + L+L P++   +
Sbjct: 76  LAERHLGRSGISFEDLCGKGANQISFDQVDIAKAAEYACEDSDQTLDVHLVLWPQIEAND 135

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           KL  +YE L+    + + ++E  G+ ID   L   S E+ + +L LE   Y+++G+ FNL
Sbjct: 136 KLKFIYE-LEIASSEALYRIERNGVLIDAPTLAAQSHELGQRILQLETEAYEIAGQPFNL 194

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           SSPKQLG+I F KL  P   KT TG   T  + LE++   D P+   +LE R L+K+K T
Sbjct: 195 SSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKL-AEDYPLPAKLLEHRSLAKLKGT 253

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D L      RT RVHT Y+ A  +TGRL+S +PNLQNIPI+T  G+++R AF++ P  
Sbjct: 254 YTDKLAQLALPRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTAEGRRVREAFVAAPGC 313

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            + SADYSQIELRI+AHI+    L + F + LD+HR  AAE+FGV +++VS + RR+AK 
Sbjct: 314 VIASADYSQIELRIMAHISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQRRYAKV 373

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           INF +IYG+S F LA  L I  + A +YI+RYF R+PG+  Y+E T+   ++ GYVET+F
Sbjct: 374 INFGLIYGMSAFGLARNLGIDNTAAKNYIQRYFERYPGVKAYMESTRELAKRQGYVETVF 433

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR+    I + K +     ERAAINAP+QG+AAD+ + +M+ V + L+    +TKM++Q
Sbjct: 434 GRRLQLAGIKNAKGAQLAGLERAAINAPMQGTAADLIKLSMVKVQQVLDAQNKSTKMIMQ 493

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDELVFEVP++E+      I   M         L+VPL   + V  NW
Sbjct: 494 VHDELVFEVPQDEVDWVRTEIPSLMAGVA----ELKVPLLAEVGVGPNW 538


>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS]
          Length = 904

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/531 (40%), Positives = 330/531 (62%), Gaps = 11/531 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506
           E+++ L+ + E+    K+ H+ KYD  V    G+S+ G  ED ML +YVL+S R    + 
Sbjct: 379 EVIARLRGWLEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESHRGV-GLN 437

Query: 507 SIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            +AQ++L  +    +++       I  D+++      ++ E+S+  LQL  +LRP++  +
Sbjct: 438 DLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVPLAGHYSCEDSDFTLQLHEVLRPRVAED 497

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           + L     L+  +  V++ +E  G+++D   L + S ++ + +L+LE+  Y+L+G+ FNL
Sbjct: 498 EGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQRAYELAGQPFNL 557

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG+ILF ++  P   KT  G   T  + L ++   D P+ + +LE+R LSK+KST
Sbjct: 558 NSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKL-AQDYPLPQVLLEYRGLSKLKST 616

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D LP  I+  T RVHT YS A+ +TGRLAS +PNLQNIP++T+ G+++R AFI+    
Sbjct: 617 YTDKLPRMISPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAE-QG 675

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           KL+SADYSQIELRI+AH++    L + F    DIHR  A+E+FGV + +V  + RR AK 
Sbjct: 676 KLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKA 735

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           INF +IYG+  F LA+ L I R  A  YI RYF R+PG+  Y++ T+   R  GYVET+F
Sbjct: 736 INFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVF 795

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR+   +I +     R   ERAAINAP+QG+AAD+ + AM++V   L+  +L T+M++Q
Sbjct: 796 GRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLDAERLRTRMIMQ 855

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDELV EVP+EE+   ++ +   M         LRVPL   + +  NW++
Sbjct: 856 VHDELVLEVPDEELAAVAEALPRLMCDVA----TLRVPLVAEVGMGTNWEQ 902



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/250 (39%), Positives = 148/250 (59%), Gaps = 6/250 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+Q+ + E    +   +FD
Sbjct: 5   LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVQDHKAE----YAVCVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++PDYK++RP +PE L  Q+  +  A +A G P + I+G EADDII T   
Sbjct: 60  ARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLAR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G    + + DKDL QLV P   L +T+  E +D+  V  K+G+PPE++V    L 
Sbjct: 120 QASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNSKFGVPPERIVDYLMLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTA   L E+G+++ ++  A  +K      N+ E      L+R L
Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVA-GNNLREAIPNFPLTRTL 238

Query: 247 VMLRTDVPIT 256
           + ++ D  +T
Sbjct: 239 LTVKCDCDLT 248


>gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107]
 gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107]
          Length = 998

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 315/1028 (30%), Positives = 511/1028 (49%), Gaps = 101/1028 (9%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K DG P +   GF   L    +  + + +A   
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGFLKSLLDTGKTFKPQGVA--- 65

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
            + FD    TFR++   +YKA+R   PE+    L  L ++ +    +P     G+EADD+
Sbjct: 66  -IAFDTAEPTFRHKADTNYKAHRDVAPEVFFQDLEQLQQILSDQMRLPLCIAPGYEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A   G+ V I+S D+DL QLV  +     LY              I  + V+ 
Sbjct: 125 LGTLANRAADAGWGVRILSGDRDLFQLVDNSRDIAVLYMGGGPYAKGSGPTLIQEDGVVS 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228
           K G+ P+K+V L+ALTGDS DNIPG+ G+G KTA  LL++  +L+ +    + ++ +  K
Sbjct: 185 KLGVMPDKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNIDLDAVYATLAEVEAEGPK 244

Query: 229 RRENILEYA---------ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
                ++ A         + A LSR L  +  D+P+    E L L+  +   L   L+ L
Sbjct: 245 ASRGAIKGALIGKLRSDRDNAYLSRMLAEILVDIPLPKDPE-LGLQQVDAEGLSDRLEDL 303

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
           E   L+ +V                 + T    G       + + T K S   +  D  S
Sbjct: 304 ELNSLVRQVGGF--------------VATFSTGGYGANANSEAEKTPKRSPAKTKPDSAS 349

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT- 398
              S   PQ+  +E   +    P        I + + +Q  VQ+L         I  DT 
Sbjct: 350 STESAAAPQQGSVE--AEAGAIPCLQPQL--IESNEALQALVQRLMDCTDPEAPIAIDTE 405

Query: 399 ---MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
              ++ F ++ + + +   +  D  ++    I        ++ +  +    + +L  L  
Sbjct: 406 TTDLNPFKAELVGVGVCWGEANDALAYI--PIGHKPPSELTEATPPQQLPLETVLMALSP 463

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514
           +  +    K   N KYD+L+L R+G+++ G   D +L  Y+ D+  + H +  ++++   
Sbjct: 464 WLASPQHPKALQNAKYDRLILLRHGLTLNGVVIDTLLADYLRDAA-AKHGLDVMSEREFG 522

Query: 515 Y---TRKEILKSRKSSIPIDKISDSQVQEHAI---ENSNVILQLWLLLRPKL--IVEKLL 566
           +   T  +++  +++       +D +++  ++    + +V  +L L LR  L  +  +LL
Sbjct: 523 FRPTTYGDLVGKKQT------FADVEIEPASLYCGMDVHVTRRLALQLRQTLQAMGPQLL 576

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            + E +++P+  V++QME TGI+ID   LK +S E+   L  LE     ++   FNL+SP
Sbjct: 577 PLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLSDELGSTLNRLETEAKQVAEVDFNLASP 636

Query: 627 KQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           KQLG++LF  L        +TKTG + T A  LE++   D+P++  +LE R LSK+KSTY
Sbjct: 637 KQLGELLFDTLGLDRKKSRRTKTG-FSTDATVLEKLEH-DHPVVPLVLEHRVLSKLKSTY 694

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+      
Sbjct: 695 VDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWT 754

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+SADYSQIELRIL H++    L + +    D+H + A  +   + ++VS   RR  KTI
Sbjct: 755 LLSADYSQIELRILTHLSGEEVLQEAYRTGDDVHALTARLLL--DKDEVSADQRRLGKTI 812

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF +IYG+   R A +  +  +EA +++ +Y  R+P +  ++E  +      GYVETI G
Sbjct: 813 NFGVIYGMGAQRFARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILG 872

Query: 865 RR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           RR   H+D             EI+   + +  +     RAA NAPIQGS+ADI + AM+ 
Sbjct: 873 RRRPFHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQ 932

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           +   L    +  ++LLQ+HDELV EV  + + T   ++V++ME A    I L VPL V  
Sbjct: 933 LQAMLLSQGIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENA----IKLSVPLVVET 988

Query: 967 KVSNNWQE 974
            V  +W E
Sbjct: 989 GVGRDWME 996


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32]
          Length = 891

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/619 (37%), Positives = 355/619 (57%), Gaps = 24/619 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +++D Y  I++  D    + KL T    +  + T +++ F ++ + I+ S  D       
Sbjct: 288 LSSDDYRTILSAGDFSALMDKLGTQSIFAIDLETTSLNPFEAEIVGISFSFSDH------ 341

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
             +  +I ++ H              +L  L+    +    KIG NIKYD  VL R GI 
Sbjct: 342 --QAYYIPVAHHYL--GVPDQLSLAHVLQALRPLLLDPAIKKIGQNIKYDYQVLRRAGIE 397

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIA-----QKWLSYTRKEILKSRKSSIPIDKISDS 536
           M G + D ML SY+L+  RSSH + ++A      K +SY   ++  S K      ++   
Sbjct: 398 MEGIWCDTMLASYLLNPNRSSHGLNALAVELLDHKMISYA--DVAGSGKDQKNFAQVEVE 455

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   ++ E+++    L  L  P++    +  +   L+ P++ ++++ME+ G+++D  LL+
Sbjct: 456 KASIYSCEDADATWLLHKLFLPQIEESGMERLLFELEMPLVKILAEMELYGVKLDLVLLQ 515

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT-GQWKTTAQ 655
           ++SA     L  LE  I+  +G  FN++SPKQLG++LF  L+ P G KTKT   W T   
Sbjct: 516 KLSAGFGSQLAELEREIFQCAGTTFNINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVD 575

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           +LE++   ++ I + IL++R LSK+KSTY D+LP  +   + R+HT Y+ A T TGRL+S
Sbjct: 576 ELERL-AAEHEIGRLILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYNQAVTNTGRLSS 634

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIPI+++ G+ IR AFI+     ++SADYSQIELR+LAH+++       F    
Sbjct: 635 SEPNLQNIPIRSEEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDRVFCDAFAKDE 694

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   AAE+FG+    V+P+MRR AKTINF +IYG  PF LA +L +    A ++I  Y
Sbjct: 695 DIHTRTAAEVFGLFPGMVTPEMRRQAKTINFGVIYGQGPFSLAKELGVSTKVAKEFIDNY 754

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R  G   +++         G+V TI GRR+   +INS   +IR+  +R AIN PIQGS
Sbjct: 755 FDRHAGARVFLDGCVREAEAKGHVTTILGRRLPIPDINSTNGNIRSFAQRNAINYPIQGS 814

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI ++AM+ V   +    L +++++Q+HDELVFEVP EE  T  +++ H ME A    
Sbjct: 815 AADIIKQAMVRVSGRMRREGLKSRLIMQVHDELVFEVPLEEKLTMEKLVCHEMENA---- 870

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + LRVPLKV++   +NW E
Sbjct: 871 LTLRVPLKVDVNFGSNWSE 889



 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/255 (47%), Positives = 174/255 (68%), Gaps = 6/255 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++  L+L+DGSS+IYRA+YA   LS    G P NA+ GF  ML K++++ + +    H
Sbjct: 1   MPEKPKLYLIDGSSYIYRAYYAIRHLSSPK-GFPTNALYGFIQMLLKVVKDRKPD----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD   +TFRNEIYP YKANR  +P+ L  Q+  ++ A +AF IP +E+ GFEADDI
Sbjct: 56  LAVVFDAGKLTFRNEIYPAYKANRSAMPDDLRLQIEPIKEAVRAFRIPVLELPGFEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T     EK+G A  I++ DKDLMQ+V+ +  L DT+K++      V++++G+PPE++V
Sbjct: 116 IGTIACDCEKKGMAAVIVTGDKDLMQIVTDSVTLLDTMKDKASGPAEVVERFGVPPERVV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GDS DNIPGIPGIG KTA  L+QE+ +L+ +L NAS +K  K  E + E+A+ A
Sbjct: 176 DILALAGDSSDNIPGIPGIGEKTAIKLIQEHHSLDQLLENASVVK-GKVGERLREFADQA 234

Query: 241 RLSRKLVMLRTDVPI 255
           RLSR+L  +  +VP+
Sbjct: 235 RLSRRLATIECNVPV 249


>gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
 gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
          Length = 950

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 294/999 (29%), Positives = 489/999 (48%), Gaps = 93/999 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 9   LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 65  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     +I K+ + P + 
Sbjct: 125 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 183 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298
            +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A  
Sbjct: 242 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       K S  S   + T   N+EQ  Q   L+     
Sbjct: 300 ----------------------------KASNTSGAGEST---NNEQNEQDSSLD----- 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409
               +N    T I   +   +WV+    +++  G  +   ++D  D     A     +  
Sbjct: 324 ----LNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 379

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H  
Sbjct: 380 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGY 438

Query: 470 KYDKLVLHRYGISMRGFE----DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           K    +LH  G      +    D  L  Y+      +  +   A+ +L     E  +  +
Sbjct: 439 KE---LLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQ 495

Query: 526 SSIPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            ++  D   D QV+E    H + +  +I  L + L P +   +   +   ++ P+  V+ 
Sbjct: 496 GTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME TG ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +    
Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKP 612

Query: 642 GAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
             +TK+G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N  
Sbjct: 613 TKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNTS 671

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIE 754
            +R+HT +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+E
Sbjct: 672 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 731

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+A ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S 
Sbjct: 732 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 791

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           + LA QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S
Sbjct: 792 YGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHS 851

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+  
Sbjct: 852 TNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAP 911

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            E    ++++ ++ME A    ++L VPL V+  + ++WQ
Sbjct: 912 GEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 946


>gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
 gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
          Length = 955

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 303/996 (30%), Positives = 484/996 (48%), Gaps = 105/996 (10%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
           + DG    A+  F + L  ++    K+   SH AV FD P  TFR E Y +YK+ R  IP
Sbjct: 12  RSDGQHTEAVHAFLSTLLNII----KDHNPSHIAVAFDLPGGTFRTEEYSEYKSGRNVIP 67

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148
           E    QL L++    A  IPA+  + +EADDI+AT T    +  + V I+S D+D+ QLV
Sbjct: 68  EAFDGQLDLIKKMLGALKIPALTQENYEADDIVATLTRQGSEAQYKVLILSGDRDIFQLV 127

Query: 149 SP-TTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
           +   T LY          +++D   V KK  +PP     L ALTG+  DN+PG+PG+G  
Sbjct: 128 TDDVTLLYPVTTGPSKGIQRMDPAAVEKKTKVPPRLYPDLAALTGEQADNLPGVPGVGPG 187

Query: 203 TAALLLQEYGNLENILINASRIKQKKR---RENILEYAETARLSRKLVMLRTDVPITIPL 259
            AA  L EYG+LE +L N+  IK KK    RENI    E  R +R+L  L   + + +  
Sbjct: 188 FAAKWLHEYGDLEGVLANSENIKGKKGEALRENI----ENVRRNRRLNQLVDTLNLDVEF 243

Query: 260 EHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET 318
           + +  + D     L +F   +EF  +  R           + PV+  +            
Sbjct: 244 DQMRFIPDLQ--ELEAFFDEVEFRTIRKRAQDI-------LGPVIRALGAQ--------- 285

Query: 319 EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQ 378
                  ++T+    ++D          P     E        PI  D    + +  D +
Sbjct: 286 -------VRTAGEEPMTDNG-------VPSGPTFE--------PIRTDDAITVKSAADFR 323

Query: 379 QWVQKLETIGSA------SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV----ETIF 428
            W +    +G        + ++      A    P+       +    T  K+    E   
Sbjct: 324 VWCEHAAHVGYGRDASGNAIEVPERLKGAVTLFPVIDVPVAREGVKVTKTKIRAAEENPV 383

Query: 429 IDLSVHTSQDST---GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
           +   + TS++S+       +++++ S   ++  +    KI  ++K  + +L  YG  + G
Sbjct: 384 LRGIILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKNQRKLLREYGYKLDG 443

Query: 486 -FEDIMLMSYVLD----SGRS--SHDIASIAQKWLSYTRKEI--LKSRKSSIPIDKISDS 536
             ED  L SY+      + R   +  I  +A+K+L   ++E   L   + +  + ++   
Sbjct: 444 AIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQEFSELVFPEEAPSLFEMPGE 503

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +  + S VI +L  +L  ++  +  L +YE ++ P++ V++ ME  GI +   LL 
Sbjct: 504 ENLRYFTQVSRVIHELARILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLN 563

Query: 597 QVSAEISKNLLSLEENIY-----DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +++   S      EE        D++GE  NL+S KQL  +LF +L  P   K K+G + 
Sbjct: 564 ELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSG-YS 622

Query: 652 TTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           T ++ +  +    +P       +  +  +R   K+K T        +     RVHT +  
Sbjct: 623 TDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQTVEGLQKAAVAD--GRVHTTFQQ 680

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-------KKLISADYSQIELRIL 758
            +  TGRL+S  PNLQNIPI+TD G++IR AFI  P        + L++ADYSQIE+RI+
Sbjct: 681 NAASTGRLSSTAPNLQNIPIRTDEGRRIRGAFIVAPKILDGVEYEGLLTADYSQIEMRIM 740

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
            H+A    L Q + +  D+HR V +E+FGV  E+V+PQMR   K +++ + YG+S F LA
Sbjct: 741 VHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYGLSRFGLA 800

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I   EA +    YF RF  +  ++         +GY ETI+GRR    +++SP  +
Sbjct: 801 KQLNISSDEAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGRRRSLPDLDSPNRT 860

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ERAA+NAPIQG+AADI + AMI++H+ L++  L T+MLLQ+HDE++ EV   E  
Sbjct: 861 RREAAERAALNAPIQGTAADIIKIAMINIHRRLQEENLKTRMLLQVHDEIILEVAAGERE 920

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            A +I+V  M +A    I L+VPL V +    +W+E
Sbjct: 921 AAQRILVEEMSEA----IELKVPLDVQVGWGKSWEE 952


>gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8]
          Length = 955

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 295/1000 (29%), Positives = 490/1000 (49%), Gaps = 95/1000 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 14  LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 70  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     +I K+ + P + 
Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 187

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298
            +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A  
Sbjct: 247 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 304

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       K S  S   + T   N+EQ  Q          
Sbjct: 305 ----------------------------KASNTSGAGEST---NNEQNEQD--------- 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409
           S   +N    T I   +   +WV+    +++  G  +   ++D  D     A     +  
Sbjct: 325 SSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 384

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H  
Sbjct: 385 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGY 443

Query: 470 KYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           K    +LH  G     + +  F D  L  Y+      +  +   A+ +L     E  +  
Sbjct: 444 KE---LLHLLGAVDLDMDLPMF-DTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 499

Query: 525 KSSIPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           + ++  D   D QV+E    H + +  +I  L + L P +   +   +   ++ P+  V+
Sbjct: 500 QGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVL 556

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             ME TG ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +   
Sbjct: 557 HGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLK 616

Query: 641 SGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
              +TK+G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N 
Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNT 675

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
             +R+HT +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+
Sbjct: 676 SDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQV 735

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+A ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S
Sbjct: 736 ELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLS 795

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + LA QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++
Sbjct: 796 TYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALH 855

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S     R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+ 
Sbjct: 856 STNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIA 915

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             E    ++++ ++ME A    ++L VPL V+  + ++WQ
Sbjct: 916 PGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 951


>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
 gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
          Length = 908

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/624 (38%), Positives = 359/624 (57%), Gaps = 31/624 (4%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P     Y  I    D+ QW++KL+     +F   T ++    ++ + +           S
Sbjct: 303 PSVEKQYQVITEQADLDQWLKKLKDSDLFAFDTETTSLRYMDAEIVGV-----------S 351

Query: 422 FKVE---TIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           F VE     ++ L      D  G    L ++ +L  LK   E+    K+G N+KYDK VL
Sbjct: 352 FAVEPGKAAYVPLG----HDYMGAPEQLDRDSVLEQLKPLLEDPKHKKVGQNLKYDKNVL 407

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDK 532
             + I + G  ED M+ SYVL+S  + HD+ S+A+ +L   + T + I       +  ++
Sbjct: 408 ANHDIQLEGIAEDTMVESYVLNSVGTRHDMDSLARTYLDEETITYESIAGKGAKQLTFNQ 467

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I       +A E++++ L+L   L P+L    KL  VY  +D P++ V+S+ME  G  I 
Sbjct: 468 IDLESAGPYAAEDADITLRLHQTLAPRLKDTGKLESVYREIDLPLVPVLSRMEQRGTLIS 527

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q S E+++ +  LE+  ++++GE FNL S KQL  IL+ KL      KT  G   
Sbjct: 528 ASTLRQHSQELAERMAELEKEAHEVAGEAFNLGSTKQLQAILYDKLGLRVIKKTPKGA-P 586

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +TA+ + Q    ++ + + I+E R LSK+KSTY D+LP  I+ RT RVHT Y  A T TG
Sbjct: 587 STAEPVLQELAHEHELPRLIVEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATG 646

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIPI+T  G++IR+AFI+P   KL++ADYSQIELRI+AH++    L   F
Sbjct: 647 RLSSSEPNLQNIPIRTQEGRRIRQAFIAPKGYKLLAADYSQIELRIMAHLSGDRGLLTAF 706

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           E+  DIH+  AAE+FGV +++V+   RR AK INF +IYG+S F L+ QL + R  A +Y
Sbjct: 707 EHGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIYGMSAFGLSRQLEVDRKTAQEY 766

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF R+PG+ +Y++  +     +GYVET++GRR++  EIN+    ++   ER AINAP
Sbjct: 767 IDRYFERYPGVLKYMDNIRKQAHDDGYVETLYGRRLYLPEINARNKQLQQAAERTAINAP 826

Query: 892 IQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI +RAMI V   L  +H     M +Q+HDEL+ EV EE +      +V  M  
Sbjct: 827 MQGTAADIIKRAMIEVDNWLRSEHASDACMTMQVHDELIIEVREEAVDKVKDGLVKRMSA 886

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A     +L VPL V   V +NW +
Sbjct: 887 AA----SLDVPLLVEAGVGDNWDQ 906



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/281 (38%), Positives = 162/281 (57%), Gaps = 10/281 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + LVDGSS+++RA++A P L  S+ H   P  AI G  +ML ++ Q+       S   V+
Sbjct: 9   VVLVDGSSYLFRAYHALPPLTTSKNH---PTGAIKGVISMLRRIEQDFP----GSKTVVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+++Y +YKANRP +P+ L  Q+  +    +A G+P + + G EADD+I T 
Sbjct: 62  FDAKGKTFRHDMYEEYKANRPPMPDDLAVQIEPIHEIVRAMGLPLLIVPGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            + A  +G  V + + DKD+ QLVS    L +T+ E  +D + V++K+G+ PE+++   A
Sbjct: 122 AHEATSKGIDVVVSTGDKDMAQLVSDHVTLINTMTETAMDRDGVVEKFGVTPEQIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD +DNIPG+   G KTA   LQ Y NL+N++ ++  IK  K  E + E  +T  LSR
Sbjct: 182 LVGDKVDNIPGVNKCGPKTAVKWLQSYDNLDNLIEHSDEIK-GKIGEYLREATDTLPLSR 240

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           +L  +RTDV +   LE L     +   L+   K  EF   I
Sbjct: 241 ELATIRTDVELEFGLEDLQERQQDDASLLELFKEYEFRTWI 281


>gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
 gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
          Length = 1003

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 324/1063 (30%), Positives = 483/1063 (45%), Gaps = 152/1063 (14%)

Query: 1    MQKENH-LFLVDGSSFIYRAFYATPLLSRK--------HDGLPVNAIAGFCNMLWKLLQN 51
            M  EN  L L+DG S   R+F+    ++ K         DG    A+  F + L  ++++
Sbjct: 1    MTTENKTLLLIDGHSLALRSFFGIYTMAEKTGQHIFVRSDGQHTEAVHAFLSTLLSIIKD 60

Query: 52   SRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE 111
            ++     SH AV FD P  TFR   Y +YK  R  IPE    Q+ L++    A  IPA+ 
Sbjct: 61   NQP----SHIAVAFDLPGGTFRTAEYGEYKGGRNAIPEAFNGQIDLIKKMLGALNIPALT 116

Query: 112  IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE-----EKIDI 165
             + +EADDI+AT T    + G+ V I+S D+D+ QLV+   T LY          +++D 
Sbjct: 117  YENYEADDIVATLTRRGTEAGYKVLILSGDRDIFQLVTDDVTLLYPVTTGPSKGIQRMDP 176

Query: 166  EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
              V KK  +PP     L ALTG+  DN+PG+PG+G   AA  L EYG+L+ ++ N+ +I 
Sbjct: 177  AAVEKKTKVPPHMYPDLAALTGEQADNLPGVPGVGPGFAAKWLGEYGSLDAVIENSDKIG 236

Query: 226  QKKR---RENILEYAETARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEF 281
             KK    RENI    +    +R+L  L  D+ + + LE      D +   L +F   +EF
Sbjct: 237  GKKGEALRENI----DNVVRNRRLNQLVNDLDLNVTLEDTAFTPDLDA--LNTFFDEVEF 290

Query: 282  TKLINRVATTYDC---DAANIEPVVLDINTTENKG------------IAIETEIDRDTTI 326
              +  R A T       A    P        E               IA           
Sbjct: 291  RTIRKRAADTLGPIVRAAGTAGPASSTAEAGEEGATKKAPTGPVYAPIATSAPTKNADAA 350

Query: 327  KTSQFSSLSDQTSKINSEQTPQKLFLERLQ-KLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
                F + + + +  N EQ       ERL+  ++ YP+ N    +               
Sbjct: 351  AFRAFCAAAAEENYGNDEQGAPIAVPERLEGAVTLYPVTNLPVAR--------------P 396

Query: 386  TIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
             IG A + K+    + A    P  + +  L    +TS  ++T  ID              
Sbjct: 397  AIGDAPAVKVTKTKIRAAEENPELLGV--LLTSKNTSLWIDTRSID-------------- 440

Query: 445  LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSH 503
               E+ + L  +  +E   KI  ++K  + +L  YG  + G  ED  L SY+        
Sbjct: 441  --PELDAALAAWLSDEAARKIVMDLKVQRKLLRAYGYELAGAVEDPALSSYMCG------ 492

Query: 504  DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN------------------ 545
                 A + L   R E L  R   IP D  +    Q    E                   
Sbjct: 493  -FIPTATRKLFSERMEDLAERYLWIPKDPYAQLVFQPEEDEAEPSLFSLPGEAEPVDNLR 551

Query: 546  -----SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                 S +I +L  LL  ++     L VYE ++ P++ V++ ME  GI +   LL ++  
Sbjct: 552  YFTQISRIIHELARLLHYEMEEHGQLKVYEEIELPLLYVLADMEQAGIAVSDALLTELHD 611

Query: 601  EISKNLLSLEENIYDLSG---------EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              S      ++    + G         E  NL+S KQL  +LF KL  P   K K+G + 
Sbjct: 612  TFSARANQAQDAARTIIGDTVQTDDGEEPLNLASVKQLQTVLFDKLALPHTRKIKSG-YS 670

Query: 652  TTAQDLEQINCGDNP-------------IIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            T A+ + ++    +P                NI   + +  ++   AD           R
Sbjct: 671  TDAESVTELLAKISPESDGAAFLGALAAYRDNIKLVQTVEGLQKAAADD---------GR 721

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-------KKLISADYS 751
            VHT +   +  TGRL+S  PNLQNIPI+T+ G++IR AFI  P        + L++ADYS
Sbjct: 722  VHTTFQQGAASTGRLSSTAPNLQNIPIRTEEGRRIRGAFIVAPAPVDGVEYEGLLTADYS 781

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            QIE+RI+ H+A    L   +E   D+HR V +E+FGV  E+V+P+ R   K +++ + YG
Sbjct: 782  QIEMRIMVHLAADEKLIAAYEAGEDLHRYVGSEVFGVAPEEVTPEQRSKVKAMSYGLAYG 841

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            +S F LA QL I   EA +    YF RF  +  ++        Q+GY ETIFGRR    +
Sbjct: 842  LSRFGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGRRRVLPD 901

Query: 872  INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            ++SP    R   ERAA+NAPIQG+AADI + AMI++H+ L +  L T+MLLQ+HDE++ E
Sbjct: 902  LDSPNRVRREAAERAALNAPIQGTAADIIKIAMINIHRRLREEGLKTRMLLQVHDEIILE 961

Query: 932  VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            V   E   A +++V  M  A     +LRVPL V +    +WQE
Sbjct: 962  VATGEREAAERVLVEEMSGAA----SLRVPLDVQVGWGKSWQE 1000


>gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
          Length = 950

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 295/1000 (29%), Positives = 491/1000 (49%), Gaps = 95/1000 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 9   LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 65  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     +I K+ + P + 
Sbjct: 125 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPVQY 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 183 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298
            +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A  
Sbjct: 242 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       K S  S   + T   N+EQ  Q   L+     
Sbjct: 300 ----------------------------KASNTSGAGEST---NNEQNEQDSSLD----- 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409
               +N    T I   +   +WV+    +++  G  +   ++D  D     A     +  
Sbjct: 324 ----LNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 379

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H  
Sbjct: 380 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGY 438

Query: 470 KYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           K    +LH  G     + +  F D  L  Y+      +  +   A+ +L     E  +  
Sbjct: 439 KE---LLHLLGAVDLDMDLPMF-DTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494

Query: 525 KSSIPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           + ++  D   D QV+E    H + +  +I  L + L P +   +   +   ++ P+  V+
Sbjct: 495 QGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVL 551

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             ME TG ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +   
Sbjct: 552 HGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLK 611

Query: 641 SGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
              +TK+G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N 
Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNT 670

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
             +R+HT +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+
Sbjct: 671 SDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQV 730

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+A ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S
Sbjct: 731 ELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLS 790

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + LA QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++
Sbjct: 791 TYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALH 850

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S     R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+ 
Sbjct: 851 STNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIA 910

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             E    ++++ ++ME A    ++L VPL V+  + ++WQ
Sbjct: 911 PGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 946


>gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
 gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
          Length = 960

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 290/998 (29%), Positives = 487/998 (48%), Gaps = 88/998 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAF+A P+ S     G P NA+ GF  ML  ++ N       +  AV F
Sbjct: 16  LLVIDGHSLAFRAFFALPVESFTTSQGQPTNAVYGFLTMLSDVITNEHP----TRLAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRN++  +YK  R   P+ LL QLPL++ A QA G+  IE  G+E DD+I T  
Sbjct: 72  DVKGGTFRNDLLEEYKGTREAAPQELLSQLPLIQQALQALGVTYIEQPGYEGDDVIGTLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + ++ G  V ++S D+D  QL+   TT LY        D++H     V +K+G+ P + 
Sbjct: 132 SMGQQAGDRVLVLSGDRDAFQLIDDDTTVLYP--GHHFKDLKHMTPAAVEEKYGVTPAQY 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236
             L AL G+  DNIPG+PG+G   AA  + +YG+L+ I+ +A +I  KK    R+NI   
Sbjct: 190 PDLAALRGEKADNIPGVPGVGDGFAAKWIHQYGSLQGIIEHADQITGKKGEALRDNI--- 246

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-----TKLINRVATT 291
            +   L+RK+  L  D+ + + ++ L   + +   L +   AL+F     TK++N  + +
Sbjct: 247 -DQVLLNRKVNALVRDLDLGVSVDDLTFGNVDHAELSALFSALQFGSRTRTKILNAFSNS 305

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                   +P  +D++             D D  ++      ++D  + I   +      
Sbjct: 306 ------TAQPGAVDVDAI----------ADSDQQLQIPVLDQVTDAAALIAWAEQYLPAV 349

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            +  Q  ++     ++  ++     + Q     E   +AS+ ++       ++KP A ++
Sbjct: 350 TDDTQTTNEPATGENAAGRMDIVTQLHQQSNDCEEAVNASWTLVA----VGNAKPGASSL 405

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQD---STGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            T+         V     D S+H +     ST  NT++      L    ++      G N
Sbjct: 406 KTI-VLSAQGHAVVVAMRDTSLHDAVQQIISTHANTMSVHGYKALLHMAQS-----AGLN 459

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           +                  D  L  Y+ D   + H I   A+ +L      +    + ++
Sbjct: 460 VPIPLF-------------DTKLAGYLADPDYTGHTIDEYAEHFLRIDVPAVQTQAQGTL 506

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LDKPMIDVVSQ 582
             D + D    +   ++ ++ LQ  L+      + + L   E+      ++ P+  V+ +
Sbjct: 507 DFDNMDDETPTQ---DDKDLGLQAALVSAMARHLARELQQREQYALLRCIELPVSVVLYR 563

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G  +D+  L  + A  ++    +E   +D +G +FNLSSPK++G +LF  +     
Sbjct: 564 MEQEGAAVDRMRLDSLLATFAEESGRMERMAWDAAGSEFNLSSPKKIGKVLFEDMGLTPL 623

Query: 643 AKTKTGQWKTTAQDLEQ--INCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRT 696
            KTK+G + T A  L     N  +       +  IL  R ++K++     +L + IN+  
Sbjct: 624 RKTKSGHYTTNAATLTTLYANAEEGSAAYVFLGAILRHRGVNKLQQI-VQTLIDAINRTD 682

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIEL 755
             +HT +      TGRL+S +PNLQNIP +   G+  R AFI +     L+SADYSQ+EL
Sbjct: 683 GHIHTTFEQTVAATGRLSSTDPNLQNIPNRNAEGRDTRSAFIPAEGFDALLSADYSQVEL 742

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R++A  +    L   F++  D HR VA+ ++G+ ++ +S   R H K +++ + YG+S +
Sbjct: 743 RLMADFSGDEALIDAFKSGADFHRYVASLVYGIPVDDISGDQRSHVKAMSYGLAYGLSSY 802

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+ QL I   EA    ++YF  F  +HEY+E      R+ GY ET+FGRR ++  + SP
Sbjct: 803 GLSQQLGITPKEADALKQQYFRTFGKVHEYLESLVATARERGYTETMFGRRRYFPALRSP 862

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
              +R   ERAA+NAPIQGSAADI + AMI   ++L    + ++++LQIHDELV ++   
Sbjct: 863 NRMVREAAERAALNAPIQGSAADIMKMAMIRAERALRSQGMRSRIVLQIHDELVVQLAPG 922

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           E  +A+ ++  +ME A    + L VPL V+  +  +WQ
Sbjct: 923 EHESATALVKDAMEHA----VQLAVPLDVSTGIGTDWQ 956


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/535 (40%), Positives = 336/535 (62%), Gaps = 12/535 (2%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504
            +++++  K  +E +  LKIG NIKYD  VL +YGI+++G   D M+  Y++      H+
Sbjct: 415 AQKMVNIFKPLYEEDKILKIGQNIKYDYEVLAQYGINIKGKMFDTMIAHYLIQP-ELHHN 473

Query: 505 IASIAQKWLSYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           +  +A+  L+Y      E++ ++ K    +  +S + + E+A E++++ LQL+ +L PKL
Sbjct: 474 MDYMAETLLNYKTIHIDELIGAKGKEQKNMRNLSPTSIYEYACEDADITLQLYNVLLPKL 533

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
                  ++  ++ P++ V++ ME+ G+ +D D L++ S   +K + + E  IY+ +GEK
Sbjct: 534 KDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDALQETSNIFTKRMQTYEAQIYEQAGEK 593

Query: 621 FNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           FN+SSPKQ+GDILF K++      KTK GQ+ T  + L+ +    +PI++NIL +R + K
Sbjct: 594 FNISSPKQVGDILFGKMQIMEKPKKTKKGQYVTNEEVLQSLEAS-SPIVRNILNYRGIKK 652

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +  TY D+LP  INKRT R+HT ++ A T TGRL+S +PNLQNIP++TD G++IR+ FI 
Sbjct: 653 LLGTYVDALPKLINKRTGRIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIP 712

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            P     SADYSQIELRI+AH++K   + + F +  DIHR  AA+I+ + +E V+   R+
Sbjct: 713 EPECVFFSADYSQIELRIMAHLSKDENMIEAFRSGYDIHRATAAKIWHIPMEDVTDTQRK 772

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK  NF IIYGI+ + LA ++ IP +EA   I+ YF+ FP +H+++E  K   R+ GY 
Sbjct: 773 KAKQANFGIIYGITTYGLAQRMGIPNNEAKKLIEDYFNTFPKVHDFMESAKELARKKGYA 832

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ETIFGRR + ++INS  S++R   ER AINAPIQG+ ADI + AMI +++      + +K
Sbjct: 833 ETIFGRRRYLNDINSKNSTVRGFAERNAINAPIQGTEADIIKVAMIRIYERFCRENIRSK 892

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+LQ+HDEL F V  +E      I++  M+ AC     L VPL  +     NW E
Sbjct: 893 MILQVHDELNFSVFPDEKERVEHIVLEEMQAAC----TLSVPLIADAGWGKNWLE 943



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 159/290 (54%), Gaps = 15/290 (5%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +FL+D  + I+R++YA    P ++ K  GL  +AI GF N L +++   +     +H 
Sbjct: 27  DKIFLIDAYALIFRSYYAFIKNPRINSK--GLNTSAIMGFFNTLHEVITKEQ----PTHI 80

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFRNE +P YKA R   PE +   +P ++   +A  IP ++  GFEADD+I
Sbjct: 81  GVAFDV-GKTFRNEAFPQYKAQREATPEDIKLSVPYIQDILKAMHIPILQADGFEADDVI 139

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPP-E 177
            T       +G    +++ DKD  QL+     +Y        +I   + + +K+ IP   
Sbjct: 140 GTLATRFSADGIDTFMLTPDKDYGQLIGSHVYMYRPRHGGGYEILGEKEIKEKYNIPKTS 199

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GD+ DN PG PG+G KTA+ L+ E+G+++NIL N  +IK  K +E I    
Sbjct: 200 QVIDLLALMGDAADNFPGCPGVGEKTASKLINEFGSIDNILSNTDKIK-GKLKEKIENAV 258

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           +  ++S+ L  +R DVPI I L+ L  E+ +  +L      LEF  L+N+
Sbjct: 259 DDIKMSKFLATIRRDVPINIKLDELKTEEPDINKLHEIFTELEFRNLLNK 308


>gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 1003

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 323/1060 (30%), Positives = 486/1060 (45%), Gaps = 146/1060 (13%)

Query: 1    MQKENH-LFLVDGSSFIYRAFYATPLLSRK--------HDGLPVNAIAGFCNMLWKLLQN 51
            M  EN  L L+DG S   R+F+    ++ K         DG    A+  F + L  ++++
Sbjct: 1    MTTENKTLLLIDGHSLALRSFFGIYTMAEKTGQHIFVRSDGQHTEAVHAFLSTLLSIIKD 60

Query: 52   SRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE 111
            ++     SH AV FD P  TFR   Y +YK  R  IPE    Q+ L++    A  IPA+ 
Sbjct: 61   NQP----SHIAVAFDLPGGTFRTAEYGEYKGGRNAIPEAFNGQIDLIKKMLGALNIPALT 116

Query: 112  IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE-----EKIDI 165
             + +EADDI+AT T    + G+ V I+S D+D+ QLV+   T LY          +++D 
Sbjct: 117  YENYEADDIVATLTRRGTEAGYKVLILSGDRDIFQLVTDDVTLLYPVTTGPSKGIQRMDP 176

Query: 166  EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
              V KK  +PP     L ALTG+  DN+PG+PG+G   AA  L EYG+L+ +L N  +I 
Sbjct: 177  AAVEKKTKVPPHMYPDLAALTGEQADNLPGVPGVGPGFAAKWLGEYGSLQGVLDNRDKIG 236

Query: 226  QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEFTKL 284
             KK  E + E  +    +R+L  L  D+ + + LE      D +   L +F   +EF  +
Sbjct: 237  GKKG-EALRENVDNVVRNRRLNQLVNDLDLNVTLEDTAFTPDLDA--LNTFFDEVEFRTI 293

Query: 285  INRVATTYDCDAANIEPVVLDINTTENKGIAIET----------------EIDRDTTIKT 328
              R A T       + P+V    +      A E                  I+     K 
Sbjct: 294  RKRAADT-------LGPIVRAAGSAGATSSAAEAGEEGAPKKAPTGPVYAPINTSAPTKN 346

Query: 329  SQ------FSSLSDQTSKINSEQTPQKLFLERLQ-KLSQYPINNDSYTKIVNTKDIQQWV 381
            +       F S + + +    EQ       ERL+  ++ YP+ N    +           
Sbjct: 347  ADAAAFRAFCSAAAEENYGTDEQGAPIAVPERLEGAVTLYPVTNLPVAR----------- 395

Query: 382  QKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
                 IG A + K+    + A    P  + +  L     TS  ++T  ID          
Sbjct: 396  ---PAIGDAPAVKVTKTKIRAAEENPELLGV--LLTSKSTSLWIDTRTID---------- 440

Query: 441  GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG 499
                   E+ + L  +  +E   KI  ++K  + +L  YG  + G  ED  L SY+    
Sbjct: 441  ------PELDAALAAWLSDEAARKIVMDLKVQRKLLRAYGYELAGAVEDPALSSYMCG-- 492

Query: 500  RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-------------- 545
                     A + L   R E L  R   IP +  +    Q    E               
Sbjct: 493  -----FIPTATRKLFSERMEDLAERYLWIPKEPYAQLVFQPEEDEAEPSLFSLPGEAEPV 547

Query: 546  ---------SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
                     S +I +L  LL  ++     L VYE ++ P++ V++ ME  GI +   LL 
Sbjct: 548  DNLRYFTQISRIIHELARLLHYEMEEHGQLKVYEEIELPLLYVLADMEQAGIAVSDALLT 607

Query: 597  QVSAEISKNLLSLEENIYDLSG---------EKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            ++    S      +E+   + G         E  NL+S KQL  +LF  L  P   K K+
Sbjct: 608  ELHDTFSARANQAQESARAIIGGEVATEDGEEPLNLASVKQLQTVLFETLGLPHTRKIKS 667

Query: 648  GQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            G + T A+ + ++    +P       +  +  +R   K+  T  + L     +   RVHT
Sbjct: 668  G-YSTDAESVTELLSKISPESDGAAFLGALAAYRDNIKLAQT-VEGLQKAATE-DGRVHT 724

Query: 702  FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-------KKLISADYSQIE 754
             +   +  TGRL+S  PNLQNIPI+T+ G++IR AFI  P        + L++ADYSQIE
Sbjct: 725  TFQQGAASTGRLSSTAPNLQNIPIRTEEGRRIRGAFIVAPEPIDGVEYEGLLTADYSQIE 784

Query: 755  LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            +RI+ H+A    L   +E   D+HR V +E+FGV  E V+P+ R   K +++ + YG+S 
Sbjct: 785  MRIMVHLAADEKLIAAYEAGEDLHRYVGSEVFGVAPEDVTPEQRSKVKAMSYGLAYGLSR 844

Query: 815  FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            F LA QL I   EA +    YF RF  +  ++        Q+GY ETIFGRR    +++S
Sbjct: 845  FGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGRRRVLPDLDS 904

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
            P    R   ERAA+NAPIQG+AADI + AMI++H+ L +  L T+MLLQ+HDE++ EV  
Sbjct: 905  PNRVRREAAERAALNAPIQGTAADIIKIAMINIHRRLREEGLKTRMLLQVHDEIILEVAT 964

Query: 935  EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             E   A +++V  M  A     +LRVPL V +    +WQE
Sbjct: 965  GEREAAERVLVEEMSGAA----SLRVPLDVQVGWGKSWQE 1000


>gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 950

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 294/1000 (29%), Positives = 489/1000 (48%), Gaps = 95/1000 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 9   LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 65  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     +I K+ + P + 
Sbjct: 125 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 183 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298
            +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A  
Sbjct: 242 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       K S  S   + T   N+EQ  Q          
Sbjct: 300 ----------------------------KASNTSGAGEST---NNEQNEQD--------- 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITD-----TMDAFHSKPIAI 409
           S   +N    T I   +   +WV+    +++  G  +   ++D        A     +  
Sbjct: 320 SSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGGGSQRHAICGDAVGH 379

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H  
Sbjct: 380 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGY 438

Query: 470 KYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           K    +LH  G     + +  F D  L  Y+      +  +   A+ +L     E  +  
Sbjct: 439 KE---LLHLLGAVDLDMDLPMF-DTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494

Query: 525 KSSIPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           + ++  D   D QV+E    H + +  +I  L + L P +   +   +   ++ P+  V+
Sbjct: 495 QGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVL 551

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             ME TG ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +   
Sbjct: 552 HGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLK 611

Query: 641 SGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
              +TK+G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N 
Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNT 670

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
             +R+HT +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+
Sbjct: 671 SDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQV 730

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+A ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S
Sbjct: 731 ELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLS 790

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + LA QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++
Sbjct: 791 TYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALH 850

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S     R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+ 
Sbjct: 851 STNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIA 910

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             E    ++++ ++ME A    ++L VPL V+  + ++WQ
Sbjct: 911 PGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 946


>gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
 gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
          Length = 853

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/506 (41%), Positives = 312/506 (61%), Gaps = 33/506 (6%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           + YD   + ++   +R F+DIM+MSY LD+G   H   S++Q+ L               
Sbjct: 375 VVYDAKSMMQFFPELRAFDDIMIMSYSLDTGHHDHGFDSMSQRHLG-------------- 420

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                     Q   I N  ++++L  ++  KL   KL  VY  L++P++ V+ ++E TGI
Sbjct: 421 ----------QIFGITNGCILIRLHRVIMRKLFSAKLYTVYYTLERPLVPVIYELEKTGI 470

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID +LLKQ+S E S ++ +LEE I+ L+G KFN++S +QLG +LF  ++     K  +G
Sbjct: 471 KIDTELLKQLSDEFSLSISNLEEEIFGLAGCKFNIASSQQLGKVLFEHMRIGGAKKMPSG 530

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T A+ L  +      +   IL+WR  +K+KSTY D+L   ++  T RVHT YS+ +T
Sbjct: 531 SYCTNAEVLTALALDGVEVADKILKWRHFTKLKSTYTDALVRQVDANTGRVHTKYSMTAT 590

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S  PNLQNIPI++  G+KIR AFI+    KLI+ADYSQ+EL+ILAHIA +    
Sbjct: 591 ATGRLSSSNPNLQNIPIRSKDGEKIRSAFIAEKGHKLIAADYSQMELKILAHIADVKAFR 650

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F   LDIH + A +IFG   E +  ++RR AK+INF IIYG+  + LA  + I R EA
Sbjct: 651 QAFAEGLDIHVVTAQQIFGEYYE-IDYELRRRAKSINFGIIYGMGSYGLARNIGISRREA 709

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           ++Y+++YF  +P I  Y+E TK + +++GY  T FGR+   + INSPK ++ ++ ERAAI
Sbjct: 710 SEYVEQYFQYYPEIKRYMETTKAYAKKHGYTITAFGRKCFIEGINSPKRALSSVAERAAI 769

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI ++AM+     L+D      MLLQ+HDEL+ EVPEE + + ++++   M
Sbjct: 770 NAPIQGTAADIVKKAMV----RLQDRLTQGTMLLQVHDELLVEVPEEHVLSVARLMKEVM 825

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A +      +PL VNI V +NW +
Sbjct: 826 ESAVV----FSLPLDVNISVGDNWGD 847



 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/300 (39%), Positives = 176/300 (58%), Gaps = 5/300 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++    +VD   F++RA+YA P LS  ++  PV  + GF N+L K L        A +
Sbjct: 1   MMEKKSFVIVDAYGFLFRAYYALPGLSTSYN-FPVGGVYGFINILLKHLSFHD----ADY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  +  FR+ +Y +YK NRPK PE L  Q   +R A +AF I + E+  +EADD+
Sbjct: 56  LVVVFDSGSKNFRHTMYSEYKTNRPKAPEDLSLQCAPLREAVEAFNIVSEEVLNYEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT           V I+S DKDL+QL++    +YD +K   +  E+V++K+G+  +K++
Sbjct: 116 IATLCTKYASSNVGVRILSADKDLLQLLNDNVQVYDPIKSRYLTNEYVLEKFGVSSDKLL 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              ALTGD+ DNIPG+P IG KTAA L+ E+G+L+N+L +  ++ QKK R+ + EYA+ A
Sbjct: 176 DAMALTGDASDNIPGVPSIGVKTAAKLINEFGSLDNVLNSVEQVAQKKCRDMLTEYADRA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR L+ L  DV +   LE       +  +L++FL+  E T L  +VA      AA I+
Sbjct: 236 ILSRDLISLCHDVEVEGDLEKYAKRVPDPVKLMAFLEKYELTSLEGKVAKYCKMVAAPIQ 295


>gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
 gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
          Length = 955

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 293/1000 (29%), Positives = 488/1000 (48%), Gaps = 95/1000 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 14  LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 70  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     ++ K+ + P + 
Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIVDKYKVTPAQY 187

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298
            +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A  
Sbjct: 247 VKLNRKVNALVRDVDLGVDIEDLTFGAVDVAQIDALFKELEFGPRTRSRVLKTFNTGA-- 304

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       K S  S   + T   N+EQ  Q          
Sbjct: 305 ----------------------------KVSNTSGAGEST---NNEQDKQD--------- 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMDAFH-----SKPIAI 409
           S   +N    T I   +   +WV+    +++  G  +   ++D  D           +  
Sbjct: 325 SNLDLNLPEPTSITAPEQFDEWVKAHRAEVKVPGEIADFTVSDYGDGSQRHTVCGDAVGH 384

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H  
Sbjct: 385 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGY 443

Query: 470 KYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           K    +LH  G     + +  F D  L  Y+      +  +   A+ +L     E  +  
Sbjct: 444 KE---LLHLLGAVDLDMDLPMF-DTKLAGYLTQPDFHADSLKQAAEHFLDLHFTETEQPS 499

Query: 525 KSSIPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           + ++  D   D QV+E    H + +  +I  L + L P +   +   +   ++ P+  V+
Sbjct: 500 QGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVL 556

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             ME TG ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +   
Sbjct: 557 HGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLK 616

Query: 641 SGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
              +TK+G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N 
Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNT 675

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
             +R+HT +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+
Sbjct: 676 SDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQV 735

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+A ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S
Sbjct: 736 ELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLS 795

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + LA QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++
Sbjct: 796 TYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALH 855

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S     R   ERAA+NAPIQGSAADI + AMI   ++L +  + + ++LQIHDELV E+ 
Sbjct: 856 STNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSCIILQIHDELVVEIA 915

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             E    ++++ ++ME A    ++L VPL V+  + ++WQ
Sbjct: 916 PGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 951


>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 899

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/620 (36%), Positives = 358/620 (57%), Gaps = 21/620 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+  +Y  I   + +   +  L+     +    T ++D  H+  + I+          ++
Sbjct: 294 IDRAAYRAITTAEALDVLLLALKAADVVALDTETTSLDPLHADLVGIS---------CAW 344

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
           +    +  + V       G     + +L+ L+ + E+    K+  N KYD  V  R+GI 
Sbjct: 345 QAGGDYQAVYVPVGHRDAGPQLDRQTVLTALRPWLEDPQAAKLAQNAKYDWRVFWRHGIH 404

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
             G   D +L SYVL+S  + HD+ ++A+++L +     +E++   KS+     +  ++ 
Sbjct: 405 PAGLARDTLLESYVLNSSHNGHDLDTLAERYLQHQNIRYEEVVGKGKSARNFADVPVAEA 464

Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V L++  LL P+   E  L  V   ++ P++ V+++ME  G++ID+  L+ 
Sbjct: 465 LPYAAEDADVCLRVDALLWPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQLEV 524

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S E+S+++   E+  + L+G+ FNL+SPKQ+ +ILF K++ P   KT  GQ  T    L
Sbjct: 525 LSTELSRDMADCEQKAFVLAGQSFNLNSPKQIQEILFDKMRLPVLKKTPGGQPSTNEDVL 584

Query: 658 EQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            Q+    D P  + IL++R ++K+K+TYAD+LP  IN  T RVHT +  A   TGRL+S 
Sbjct: 585 AQLAVHADLP--RLILDYRGMAKLKNTYADALPQMINPDTGRVHTHFQQAVAATGRLSSN 642

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+ G++IR+AF++     L+SADYSQIELRILAH++    L Q F    D
Sbjct: 643 DPNLQNIPVRTEQGRRIRQAFVAEEGHWLLSADYSQIELRILAHLSGDARLLQAFAEGED 702

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH + AAE+F +  E V    RR AK INF +IYG +P+ LA QL I ++ A  Y+ RYF
Sbjct: 703 IHAVTAAEVFDLAPEDVDSAARRAAKAINFGLIYGQTPYGLAQQLGIDQAAARQYMDRYF 762

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+ G+ EY+ +T+   ++ GYVET+FGRR++  EI S   + R   ERAAINAP+QG+A
Sbjct: 763 ERYLGVLEYMAQTRALAKKQGYVETLFGRRLYVPEIRSSNPARRTYAERAAINAPMQGTA 822

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI+V   L++     +M+LQ+HDEL+ EVPE  +  A   +   ME       
Sbjct: 823 ADLIKMAMIAVDAWLQERPERGRMILQVHDELILEVPEAGLEAAKSALKARMEGVA---- 878

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V + +  +W E +
Sbjct: 879 ELAVPLLVGLGIGKHWDEAH 898



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/252 (44%), Positives = 152/252 (60%), Gaps = 9/252 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVD SSF+YRAF+A P L R  D LP  AI G  NML +LL    KE  +    VIFD 
Sbjct: 7   ILVDASSFLYRAFHALPDL-RAPDNLPTGAIYGVANMLRRLL----KEHPSDEIIVIFDA 61

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
           P  TFR+ +YP+YKA+RP +PE L  Q+PL+    +A G+P +     EADD+I T    
Sbjct: 62  PGGTFRDRLYPEYKAHRPAMPEELRVQVPLLHDWIRATGLPLVIEPDVEADDVIGTLARE 121

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           A  +   V I++ DKD+ QLV+    L DT+K  + D   V +++G+PPE++  L AL G
Sbjct: 122 AAPDQ-QVLIVTGDKDMAQLVNSRVRLIDTMKGIETDAAGVEERFGVPPERIADLLALIG 180

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D +DNIPG+PG+G KTAA  L +YG+L+ +L +A  I  K   E +   A    LSR L 
Sbjct: 181 DKVDNIPGVPGVGPKTAARWLTQYGDLDGVLAHAGDIGGKV-GEALRASAHYLPLSRDLA 239

Query: 248 MLRTDVPITIPL 259
            +R D  +T+P+
Sbjct: 240 TIRCD--LTLPV 249


>gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 950

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 294/999 (29%), Positives = 487/999 (48%), Gaps = 93/999 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 9   LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 65  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     +I K+ + P + 
Sbjct: 125 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 183 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298
            +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A  
Sbjct: 242 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       K S  S   + T   N+EQ  Q          
Sbjct: 300 ----------------------------KASNTSGAGEST---NNEQNEQD--------- 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409
           S   +N    T I   +   +WV+    +++  G  +   ++D  D     A     +  
Sbjct: 320 SSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 379

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H  
Sbjct: 380 AWTVAAWGDERPGRATAQAIAVATATSA-AIVSLPITDTLRAQLAQFLKSEHSRTIVHGY 438

Query: 470 KYDKLVLHRYGISMRGFE----DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           K    +LH  G      +    D  L  Y+      +  +   A+ +L     E  +  +
Sbjct: 439 KE---LLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQ 495

Query: 526 SSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            ++  D   D QV+E   E    +  +I  L + L P +   +   +   ++ P+  V+ 
Sbjct: 496 GTLDFD---DDQVEEDPNELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME TG ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +    
Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMGLKP 612

Query: 642 GAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
             +TK+G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N  
Sbjct: 613 TKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNTS 671

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIE 754
            +R+HT +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+E
Sbjct: 672 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 731

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+A ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S 
Sbjct: 732 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 791

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           + LA QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S
Sbjct: 792 YGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHS 851

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+  
Sbjct: 852 TNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAP 911

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            E    ++++ ++ME A    ++L VPL V+  + ++WQ
Sbjct: 912 GEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 946


>gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705]
 gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705]
          Length = 955

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 294/999 (29%), Positives = 487/999 (48%), Gaps = 93/999 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 14  LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 70  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     +I K+ + P + 
Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 187

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298
            +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A  
Sbjct: 247 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 304

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       K S  S   + T   N+EQ  Q          
Sbjct: 305 ----------------------------KASNTSGAGEST---NNEQNEQD--------- 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409
           S   +N    T I   +   +WV+    +++  G  +   ++D  D     A     +  
Sbjct: 325 SSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 384

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H  
Sbjct: 385 AWTVAAWGDERPGRATAQAIAVATATSA-AIVSLPITDTLRAQLAQFLKSEHSRTIVHGY 443

Query: 470 KYDKLVLHRYGISMRGFE----DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           K    +LH  G      +    D  L  Y+      +  +   A+ +L     E  +  +
Sbjct: 444 KE---LLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQ 500

Query: 526 SSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            ++  D   D QV+E   E    +  +I  L + L P +   +   +   ++ P+  V+ 
Sbjct: 501 GTLDFD---DDQVEEDPNELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME TG ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +    
Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMGLKP 617

Query: 642 GAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
             +TK+G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N  
Sbjct: 618 TKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNTS 676

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIE 754
            +R+HT +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+E
Sbjct: 677 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 736

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+A ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S 
Sbjct: 737 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 796

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           + LA QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S
Sbjct: 797 YGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHS 856

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+  
Sbjct: 857 TNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAP 916

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            E    ++++ ++ME A    ++L VPL V+  + ++WQ
Sbjct: 917 GEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 951


>gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 955

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 294/1000 (29%), Positives = 488/1000 (48%), Gaps = 95/1000 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 14  LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 70  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     +I K+ + P + 
Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 187

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298
            +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A  
Sbjct: 247 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 304

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       K S  S   + T   N+EQ  Q          
Sbjct: 305 ----------------------------KASNTSGAGEST---NNEQNEQD--------- 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409
           S   +N    T I   +   +WV+    +++  G  +   ++D  D     A     +  
Sbjct: 325 SSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 384

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A +     D+   +     I ++  TS  +     +T  + +   +F ++EH   I H  
Sbjct: 385 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQFARFLKSEHSRTIVHGY 443

Query: 470 KYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           K    +LH  G     + +  F D  L  Y+      +  +   A+ +L     E  +  
Sbjct: 444 KE---LLHLLGAVDLDMDLPMF-DTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 499

Query: 525 KSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           + ++  D   D QV+E   E    +  +I  L + L P +   +   +   ++ P+  V+
Sbjct: 500 QGTLDFD---DDQVEEDPNELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVL 556

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             ME TG ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +   
Sbjct: 557 HGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLK 616

Query: 641 SGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
              +TK+G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N 
Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNT 675

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
             +R+HT +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+
Sbjct: 676 SDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQV 735

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+A ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S
Sbjct: 736 ELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLS 795

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + LA QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++
Sbjct: 796 TYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALH 855

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S     R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+ 
Sbjct: 856 STNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIA 915

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             E    ++++ ++ME A    ++L VPL V+  + ++WQ
Sbjct: 916 PGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 951


>gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307]
 gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307]
          Length = 986

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 326/1025 (31%), Positives = 507/1025 (49%), Gaps = 125/1025 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R+FYA            DG+P +   GF   L  LL N +  S+     
Sbjct: 28  LLLVDGHSLAFRSFYAFSKGGEGGLSTQDGIPTSVTYGF---LKALLDNCK--SLKPQGV 82

Query: 63  VI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
           VI FD    TFR++    YKANR   P+     +  L  +      IP     GFEADD+
Sbjct: 83  VIAFDTAEPTFRHKADETYKANRDVAPDHFFQDVDNLQEILKGCLDIPLCLAPGFEADDV 142

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T       EG+ V I+S D+DL QLV        LY        +    +I  E V+ 
Sbjct: 143 LGTLANRGANEGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPTEIREEGVVS 202

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL E G+L+ +      +   K  
Sbjct: 203 KLGVMPNKVVDLKALTGDSSDNIPGVRGVGPKTAINLLSENGDLDGVYKALEALSDPKAN 262

Query: 231 ENILEYA---------ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
              L+ A         E A  SR L  +  D+P+         ED   PRL   L  +E 
Sbjct: 263 SGALKGALKGKLSNDKENAYRSRMLAEILIDIPLP--------ED---PRL--GLGLVEL 309

Query: 282 TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
             L  R           +E + L+    +++  A         ++ T   + LS+  S+ 
Sbjct: 310 GALRQR-----------LEELELNSLQRQSEKFAELFSAAGQLSLDTGSSADLSEALSEP 358

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--- 398
            SE TP           +  P+       I ++  +Q  V +L+   + +  +  DT   
Sbjct: 359 ESE-TP-----------TTPPLKPQ---LITSSAQLQALVSQLQQRSADAPAVAIDTETT 403

Query: 399 -MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
            ++ F ++ + +     +  +D ++    I I  S      + G+  L  E+L  L  + 
Sbjct: 404 DLNPFRAQLVGLGFCWGEADNDLAY----IPIGHS-----GAEGQLPLA-EVLEALAPWL 453

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY- 515
            +    K   N KYD+LVL R+G+ + G   D +L  Y+ D+  + H++  +AQ+   + 
Sbjct: 454 ASPTQRKCLQNAKYDRLVLLRHGLELNGVAVDTLLADYLRDA-SARHNLEELAQRHYGFR 512

Query: 516 --TRKEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVY 569
             +  +++   +  + +PI+  +     ++   + ++  +L + L  +L  + E L  + 
Sbjct: 513 PTSFSDLVGKGQTFADVPIEAAA-----QYCGMDVHLTYRLAIDLVQQLEQLGEALPQLL 567

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             L+ P+  V++QME TGI+ID   L+++   +   L  LE+     +GE+FNL+SPKQL
Sbjct: 568 SELELPLEPVLAQMEATGIRIDVPYLQELGQSMGDKLQQLEQQAIAAAGEEFNLASPKQL 627

Query: 630 GDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           G++LF  L        KTKTG W T A  LE++    +P++  +LE R LSK+KSTY D+
Sbjct: 628 GELLFNTLGLDRKKSRKTKTG-WSTDAAVLEKLEDA-HPVVPLVLEHRTLSKLKSTYVDA 685

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T   ++IR+AF+      L+S
Sbjct: 686 LPQLVESETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTAYSRQIRKAFLPQKDWTLLS 745

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELRIL H+     L + + +  D+H + A  +  ++  +VS + RR  KTINF 
Sbjct: 746 ADYSQIELRILTHLCGEEALVEAYNSGDDVHALTARLL--LDKSEVSDEERRLGKTINFG 803

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR- 866
           +IYG+   R A    + ++EA +++ RY  R+P +  ++E  +      GYVET+ GRR 
Sbjct: 804 VIYGMGAQRFARATGVSQAEAKEFLSRYKQRYPKVFAFLEWQERLALSRGYVETLMGRRR 863

Query: 867 -IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
             H+D             EI+   + +  +     RAA NAPIQGS+ADI ++AM+ + +
Sbjct: 864 PFHFDPQGLGRLKGTDPAEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKKAMVDLQQ 923

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            L D +L  ++LLQ+HDELV E     + T    +  +ME+A    ++L VPL V I   
Sbjct: 924 LLLDQQLPARLLLQVHDELVLECAPNALATVQSSVQRTMEQA----VSLSVPLVVEIGSG 979

Query: 970 NNWQE 974
            NW E
Sbjct: 980 PNWME 984


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/532 (41%), Positives = 331/532 (62%), Gaps = 12/532 (2%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIAS 507
           ++   K  +ENE  +K+G NIKYD  VL  YGI ++G   D M+  YVL      H++  
Sbjct: 393 LVKIFKPLYENEEIVKVGQNIKYDMEVLRNYGIELKGPMFDTMIAHYVLQP-ELRHNMDY 451

Query: 508 IAQKWLSYT----RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           +A+ +L+Y      K I +  K+   +  +S + V  +A E++++ LQL   L PKL   
Sbjct: 452 MAEVYLNYQTIHIEKLIGERGKNQKNMRDLSPTDVYLYACEDADITLQLKNALEPKLKEA 511

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +  ++ +++ P+++V+++ME+ G++ID + LK+ S   +K +L LE  I++L+GE FN+
Sbjct: 512 GVADLFYQMEMPLVNVLAEMEMNGVRIDTEALKETSENFTKRMLDLEHQIHELAGESFNV 571

Query: 624 SSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           SSPKQ+GDILF KL+      KTKTGQ+ T+ ++L++   G N I+  IL++R L K+  
Sbjct: 572 SSPKQVGDILFGKLQIAEKPKKTKTGQFVTSEEELQKYAAG-NEIVTLILDYRGLKKLLG 630

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  IN RT  +HT ++   T TGRL+S +PNLQNIP++ + G++IR+ FI    
Sbjct: 631 TYVDALPKLINPRTGHIHTSFNQTVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDG 690

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
               SADYSQIELR++AH++    + + F++  DIH   AA+I+G +++ V+   R  AK
Sbjct: 691 CLFFSADYSQIELRVMAHLSGDKHMIEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAK 750

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             NF IIYGI+ F LA +L I R+EA   I  YF  FP +++Y+E+ K   R+ GYVET 
Sbjct: 751 RANFGIIYGITVFGLAERLGIDRNEAKQLIDGYFTTFPQVYDYMEQAKATAREQGYVETF 810

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           F RR +  +INS  +++R   ER AINAPIQGSAADI + AMI ++K  +   + +KM+L
Sbjct: 811 FHRRRYLPDINSRNATVRGFAERNAINAPIQGSAADIIKVAMIRIYKRFKRENIQSKMIL 870

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q+HDEL F V  EE     +I++  M+ A      LRVPL  +     NW E
Sbjct: 871 QVHDELNFSVLPEEKEQVERIVMEEMQNA----YPLRVPLIADGGWGKNWLE 918



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 167/291 (57%), Gaps = 15/291 (5%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + LFL+D  + IYR++YA    P ++ K  GL  +AI GFCN L ++L    KE+  ++ 
Sbjct: 2   DKLFLLDAYALIYRSYYAFINNPRINSK--GLNTSAIMGFCNTLNEVLT---KEN-PTYI 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD+  +TFRN+ +P YKA R   PE +   +P+++   +A+ IP++++ GFEADD+I
Sbjct: 56  GVAFDH-GLTFRNDAFPAYKAQREATPEDIKKAVPIIKQILEAYHIPSLQVDGFEADDVI 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177
            T    + K+G    +++ DKD  QLV     +Y        E +  + +  K+ I  P 
Sbjct: 115 GTLAMKSGKKGIDTYMLTPDKDYGQLVRENVFMYRPRHGGGYETLGEKEICDKYNITTPL 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GDS DN PG PG+G KTA+ L+ ++G++E +L   S IK  K RE +    
Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTASKLINQFGSIEELLKRTSEIK-GKLREKVENAT 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +  ++S+ L  +RTDVPI + LE L L+  +  +L      LEF    NR+
Sbjct: 234 DDIKMSQFLATIRTDVPIELNLEDLKLKQPDENKLAEIFTELEFKTFANRI 284


>gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden]
          Length = 865

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/527 (41%), Positives = 313/527 (59%), Gaps = 40/527 (7%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           L  +K  F  +H LK+ +++K    ++     ++  F+DI++MSY LD+G   H + +I 
Sbjct: 369 LDLIKPLFSLDHILKVMYDVKTLFKIIQE-DTNITAFDDILIMSYSLDAGLHDHTLKNII 427

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV----ILQLWLLLRPKLIVEKL 565
            +                          + +H I N N+    +L L   LR  L   +L
Sbjct: 428 IR-------------------------NIDKHDITNENITASTLLSLHTALRRNLFTNQL 462

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y R++KP+I+V+  ME  GI ID  +L ++S+  S  +  LEE IY LSGE+FN++S
Sbjct: 463 CTIYYRIEKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIAS 522

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            +QL  ILF K+    G K  +G + T A+ L ++      I   IL+WR  +K+K+TY 
Sbjct: 523 SRQLSTILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYT 582

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D L   I+  T RVHTFYS+ ST+TGRL+S  PNLQNIPI+++ G  IR AFI+    KL
Sbjct: 583 DVLAKQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIPIRSEEGNAIRNAFIAKSGYKL 642

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ISADYSQIELRI+AHIA +      F    DIH + A +IF  N + +  ++RR AK+IN
Sbjct: 643 ISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIF--NTQNIDKKLRRKAKSIN 700

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F IIYGISPF LA QL I RSEA+ +I+ YF  +P I  YIE  K + R +GY  T+FGR
Sbjct: 701 FGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKSYIEDIKVYARTHGYTRTVFGR 760

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           +    +INS   ++RN +ERAA+NAP+QG++ADI + +MI +   L+       M+LQ+H
Sbjct: 761 KCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSMIHLFDRLK----TGYMILQVH 816

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+FEVPE+ +    ++I   ME      + L VPLKV+I + +NW
Sbjct: 817 DELLFEVPEDHVDNTVKLIKEVMEGI----VKLSVPLKVDITIGDNW 859



 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 176/292 (60%), Gaps = 6/292 (2%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D    ++RA+YA P LS   +G+P+  + GF NML K ++       A++  V FD  
Sbjct: 11  IIDAYGLLFRAYYALPHLSTS-NGVPIGGVYGFINMLLKYIE----VHTANYLVVAFDTG 65

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
              FR++IYP YK+NR K+PE L+ Q PL+R A  A  I   E+ G+EADD+IAT +   
Sbjct: 66  GKNFRHDIYPQYKSNRIKLPEDLISQFPLLREAVNALNISYEEVAGYEADDVIATLSKNY 125

Query: 129 EK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
            K +G  VT++++DKDL+QL+     ++D VK + I  + V  K+GI   K++   +LTG
Sbjct: 126 SKFDGIKVTVVTSDKDLLQLLEHNIHIFDPVKNKYIVEDDVQDKFGISSSKLLDFLSLTG 185

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DNIPG+PGIG KTAA LL  +G+L+N+L     I++ K RE+I++Y + A LSR+L+
Sbjct: 186 DTSDNIPGVPGIGIKTAAKLLNNFGSLDNLLSQPHAIEKNKCRESIIKYQDQAILSRQLL 245

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            L   V +   +E       +  +L+ FLK  E   LIN++   +  DA  +
Sbjct: 246 TLCDTVNLDNNIEKYRSRIPDTQKLVKFLKKYELQSLINKIGKIFKTDAFTV 297


>gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15]
 gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
          Length = 892

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/623 (36%), Positives = 358/623 (57%), Gaps = 23/623 (3%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           S+  ++ + Y  +   ++ +  +  L+  G+ +  + T +++   ++ + I++S  D   
Sbjct: 284 SEATLSTEQYRTVATEEEFEALLADLKAAGTFAVDLETTSLNPLEAEIVGISLSYRDH-- 341

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 E  +I +  H    +  +    + +L  L     +    K+G N+KYD  V  R
Sbjct: 342 ------EACYIPVG-HFYLGAP-EQLPRRRVLDALTPLLIDPKIRKVGQNLKYDYQVFRR 393

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIA-----QKWLSYTRKEILKSRKSSIPIDK 532
           +GI + G + D M+ SY+L+  RS H + S+A      K +SY  +E+    K  +   +
Sbjct: 394 HGIELGGVWCDTMVASYLLNPVRSGHGLDSLAVEHLDHKMISY--EEVAGKGKEQVNFAQ 451

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   +   ++ E+S+    L  L  P++ V  +  ++  ++ P++ ++++ME+ G+++D 
Sbjct: 452 VPVEKASTYSCEDSDAAWLLHRLFLPRVAVWGMERLFFDVEMPLVPILAEMELAGVKLDL 511

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ-WK 651
            LL ++SA   K L  LE  I  L+ E FNL+SPKQLG++LF KLK P+G KTKT   W 
Sbjct: 512 PLLGELSAGFGKQLAELEGRITGLAPEPFNLNSPKQLGEVLFEKLKLPTGKKTKTKTGWS 571

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  ++LE++    + I   IL++R L+K+KSTY D+LP  +   T RVHT Y+   T TG
Sbjct: 572 TNVEELERLAEAGHEIAALILQYRGLAKLKSTYTDALPKLVQPATGRVHTSYNQTVTNTG 631

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIP++T+ G++IRRAFI+     L+SADYSQIELR+LAH ++       F
Sbjct: 632 RLSSSEPNLQNIPVRTEEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVFCDAF 691

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AAE+FG+  E V+P+MRR AK INF +IYG   F LA QL I    A ++
Sbjct: 692 AKDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGIATKVAREF 751

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R PG   +++       + G+V T+ GRR+   +I S   +IR   +R A+N P
Sbjct: 752 IDNYFARHPGARAFLDGCVREAEEKGHVTTLLGRRLPIPDIKSANGNIRAFAQRNAVNYP 811

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM+ V   +    + +++++Q+HDELVFEVP+ E+    Q++   ME A
Sbjct: 812 IQGSAADIIKEAMVKVTARMRRDVVGSRLIMQVHDELVFEVPKGEVVAMEQLVRREMEHA 871

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               ++LRVPLKV+I    NW E
Sbjct: 872 ----VSLRVPLKVDINHGGNWSE 890



 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 120/290 (41%), Positives = 177/290 (61%), Gaps = 6/290 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L+L+DGSS+IYRA+YA   LS    G P NA+ GF  ML K++++ R +    H
Sbjct: 1   MTGKQTLYLIDGSSYIYRAYYAIRHLSSPK-GFPTNALYGFTQMLLKVIKDRRPD----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR ++YPDYKANR  +P+ L+PQ+  ++   +AF IP +E+ G+EADDI
Sbjct: 56  IAVVFDVGRTTFRTDLYPDYKANRSAMPDDLVPQIAPIKEMVRAFNIPVLELAGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T     E+ G    +++ DKDLMQ+VS    L DT+KE+   I  V +++G+ PE ++
Sbjct: 116 IGTIARECEERGMEAVVVTGDKDLMQIVSERVTLLDTMKEKASGIPDVQERFGVGPEGVI 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GD+ DNIPG+PGIG KTA  L+QE+G+L+ +L  A  +K K   E + E+A+ A
Sbjct: 176 DILGLAGDTSDNIPGVPGIGEKTAIKLIQEFGSLDTLLERAGEVKGKT-GEKLREFADQA 234

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           RLSR+L  +  DVP+            +  RL   +K   FT L+  + +
Sbjct: 235 RLSRQLATIVRDVPMAFDFAAFAASSPDNRRLAELIKEYGFTTLMKELTS 284


>gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 1025

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 303/1057 (28%), Positives = 511/1057 (48%), Gaps = 145/1057 (13%)

Query: 7    LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L +VDG S  +RAF+A    +     G   N+I GF  ML ++++  + + +A    + F
Sbjct: 20   LLVVDGHSLAFRAFFAISADNFSTRSGQATNSIWGFITMLSQVVKKEKPDRLA----IAF 75

Query: 66   DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            D    TFRN + P YK  R   P+ LL QLP+++   +A GI  IE  G+E DD+I T  
Sbjct: 76   DVKGGTFRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGITYIEKPGYEGDDVIGTLA 135

Query: 126  YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY-----DTVKEEKIDIEHVIKKWGIPPEKM 179
             +    G+   ++S D+D  QL+    T LY       +KE  +D + V +K+ + P++ 
Sbjct: 136  TMGANAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFKDLKE--MDKDAVFEKYHVTPKQY 193

Query: 180  VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236
              L AL G++ DNIPG+PG+G   AA  + ++G+LENI+ +++ I  KK    RENI   
Sbjct: 194  PDLAALRGETADNIPGVPGVGDGYAAKWINQFGSLENIIEHSNEISGKKGEALRENI--- 250

Query: 237  AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--------- 287
             +  RL+RK+  L  D+ + + ++ L   D +  +L   L  LEF +L  R         
Sbjct: 251  -DQVRLNRKVNALVCDLDLGVTVDDLCFGDVDAAKLGILLSQLEFGELKKRKILKTFSNG 309

Query: 288  ------------VATTYDCDAANIEPVVLDINTTENKGI-------------AIETEIDR 322
                         ++TY+ +A N E V  D +  + +                +E  I+ 
Sbjct: 310  TQQSIENNMRIMFSSTYEGNANNDELVQGDQSNIDAENFQEMLASIDLHHVKTVEDFINW 369

Query: 323  DTTIKTSQFSSLSDQTSKINSEQTPQKLFLER--LQKLSQYPINNDS---YTKIVNTKDI 377
            + ++ +  ++ +   +   N+E T  +L  E    ++LS   I N+S      I+  +++
Sbjct: 370  ENSVSSLLYTEIKKDSK--NTEDTFDQLSSEEENFEELSSEKIINNSRKCAEPILKNQEV 427

Query: 378  QQWVQKLETIGSASFKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
              +  + +      F++  D++    + K + +  S L   D                  
Sbjct: 428  VIYAHECKKNSKHHFELTADSLIILVAHKAVLLYASDLQSAD------------------ 469

Query: 437  QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE--------- 487
                      + +L  L+KF +    + + H+ K    +L     S++ F+         
Sbjct: 470  ----------RALLEMLRKFLQKNSSITVLHDYKKHLGLLK----SLKLFDSNNSFGTPL 515

Query: 488  -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIE 544
             D  L SY+L+    +  + ++A+ +L     E  + ++      +D + D +      E
Sbjct: 516  LDTRLASYLLEPDFRAETLENMAEHYLDIQSDEDNLGENEAKQGELDLLIDDETPASEEE 575

Query: 545  NSNVILQL--WLLLRPKLIVEKL-LHVYERLDK------------PMIDVVSQMEITGIQ 589
            N+    Q      LR  L++  L LH    LD             P+  V+  ME  G  
Sbjct: 576  NNEKQTQAREAKFLRTALLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAA 635

Query: 590  ID----QDLLKQVSA--EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
            +D      +LKQ SA  E ++N+       + ++G   NL SPKQL  ILF         
Sbjct: 636  VDMQRLSGMLKQFSADAEFAQNM------AWKVAGSSVNLQSPKQLQQILFEHFGLKPTR 689

Query: 644  KTKTGQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            +TK G + T A+ L+ +    +P       +  +L+ R+ +K+K     SL +  +   +
Sbjct: 690  RTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDDR 748

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756
            R+HT +      TGRL+S +PNLQNIP +   G++IR AFI     + L+S DYSQ+ELR
Sbjct: 749  RIHTTFEQTIAATGRLSSADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVELR 808

Query: 757  ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
            I+AH +    L + F +  D H+ VA+ ++ + +E+V+P  R H K +++ + YG+S + 
Sbjct: 809  IMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAYGLSTYG 868

Query: 817  LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            LA QL I  +EA     +YF  F  +H+Y+E   +  ++ GY ET+FGRR ++ +++S  
Sbjct: 869  LAKQLSISPAEAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSNN 928

Query: 877  SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             + R   ER A+NAPIQG+AADI + AM+ V   L + K+ ++++LQIHDEL+ E+   E
Sbjct: 929  RASREAAERGALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGE 988

Query: 937  ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                  I+  +ME A    ++L VPL V+  V  +WQ
Sbjct: 989  QEQVENIVRKAMENA----VHLDVPLNVSTGVGVDWQ 1021


>gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel]
 gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel]
          Length = 860

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/527 (41%), Positives = 311/527 (59%), Gaps = 40/527 (7%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           L  +K  F  +H LK+ +++K    ++     ++  F+DI++MSY LD G   H + +I 
Sbjct: 364 LDLIKPLFSLDHILKVMYDVKTLFKIIQE-DTNITAFDDILIMSYSLDVGLHDHTLKNII 422

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV----ILQLWLLLRPKLIVEKL 565
            +                            +H I N N+    +L L   LR  L   +L
Sbjct: 423 IR-------------------------NTDKHDITNENITASTLLSLHTALRRNLFTNQL 457

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y R++KP+I+V+  ME  GI ID  +L ++S+  S  +  LEE IY LSGE+FN++S
Sbjct: 458 CTIYYRIEKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIAS 517

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            +QL  ILF K+    G K  +G + T A+ L ++      I   IL+WR  +K+K+TY 
Sbjct: 518 SRQLSTILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYT 577

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D L   I+  T RVHTFYS+ ST+TGRL+S  PNLQNIPI+++ G  IR AFI+    KL
Sbjct: 578 DVLAKQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIPIRSEEGNAIRNAFIAKSGYKL 637

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ISADYSQIELRI+AHIA +      F    DIH + A +IF  N + +  ++RR AK+IN
Sbjct: 638 ISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIF--NTQNIDKKLRRKAKSIN 695

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F IIYGISPF LA QL I RSEA+ +I+ YF  +P I  YIE  K + R +GY  T+FGR
Sbjct: 696 FGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKSYIEDIKVYARTHGYTRTVFGR 755

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           +    +INS   ++RN +ERAA+NAP+QG++ADI + +MI +   L+       M+LQ+H
Sbjct: 756 KCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSMIHLFDRLK----TGYMILQVH 811

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+FEVPE+ +    ++I   ME      + L VPLKV+I + +NW
Sbjct: 812 DELLFEVPEDHVDNTVKLIKEVMEGI----VKLSVPLKVDITIGDNW 854



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 176/292 (60%), Gaps = 6/292 (2%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D    ++RA+YA P LS   +G+P+  + GF NML K ++       A++  V+FD  
Sbjct: 6   IIDAYGLLFRAYYALPNLSTS-NGVPIGGVYGFINMLLKYIE----VHTANYLVVVFDTG 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
              FR++IYP YK+NR K+PE L+ Q PL+R A  A  I   E+ G+EADD+IAT +   
Sbjct: 61  GKNFRHDIYPQYKSNRIKLPEDLISQFPLLREAVNALNISYEEVAGYEADDVIATLSKNY 120

Query: 129 EK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
            K +   VT++++DKDL+QL+     ++D VK + I  + V  K+GI   K++   +LTG
Sbjct: 121 SKFDDIKVTVVTSDKDLLQLLEHNIHIFDPVKNKYIVEDDVQDKFGISSSKLLDFLSLTG 180

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DNIPG+P IG KTAA LL  +G+L+N+L     I++ K RE+I++Y + A LSR+L+
Sbjct: 181 DTSDNIPGVPSIGIKTAAKLLNNFGSLDNLLSQPHAIEKNKCRESIIKYQDQAILSRQLL 240

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            L   V +   +E  I    +  +L+ FLK  E   LIN++   +  DA  +
Sbjct: 241 TLCDTVNLDNNIEKYISRIPDTQKLVKFLKKYELQSLINKIGKIFKTDAFTV 292


>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/514 (42%), Positives = 323/514 (62%), Gaps = 30/514 (5%)

Query: 467 HNIKYD-KLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
             + YD K +LH+        ++  +D+ML SYVLDS RSS+D+ ++   ++SY   +I 
Sbjct: 358 QKVVYDLKNILHKVDFDETNQIKNCDDVMLASYVLDSTRSSYDLETL---FISYLNTDI- 413

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
                         + ++E+    + V+L+ LW  L   + +    +VYE ++ P++ ++
Sbjct: 414 --------------AAIKENRWAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPIL 459

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
            +ME  G ++D++ L++ + EI   LL LE  IY ++GE FN++SPKQL  ILF KLK P
Sbjct: 460 YEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWFNINSPKQLSYILFEKLKLP 519

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KTKTG + T A+ LE++    + II  IL++R  +KI +TY   L   IN  T R+H
Sbjct: 520 VVKKTKTG-YSTDAEVLEEL-YDKHDIIPLILDYRMYTKILTTYCQGLVQAINPVTGRIH 577

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T +    T TGRLAS EPNLQNIP+K D G+ IR+AF+      LI ADYSQIELRILAH
Sbjct: 578 TNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYMLIDADYSQIELRILAH 637

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           I++   L   F+N+LDIH   AAEIFGV+I +V+P MR  AK +NF I+YGIS + L+  
Sbjct: 638 ISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGISDYGLSRD 697

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           ++I R EAA++I RYF ++P + EY++    F R+NG+V TIF R+ +  +I S   ++R
Sbjct: 698 IKISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKNLR 757

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           N  ER A+N+PIQGSAADI + AMI V+K L+++ L ++++LQ+HDEL+ E P EE    
Sbjct: 758 NYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKEIV 817

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +I+   ME A L    L+VPL V +K  +NW E
Sbjct: 818 KEIVKSEMENAVL----LKVPLVVEVKEGSNWYE 847



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 163/295 (55%), Gaps = 12/295 (4%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           + DG+S +YRAF+A P L+    G+P NAI GF N+L K L + + +    + AV FD  
Sbjct: 5   IFDGNSILYRAFFALPQLT-TSTGIPTNAIYGFLNVLLKYLDSEKPD----YVAVAFDKK 59

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R   Y +YKANR  +P+ L  Q+P VR    A  IP +E +G+EADD+I T     
Sbjct: 60  GRAVRKSEYEEYKANRKPMPDSLQVQIPYVREILAAMNIPVLECEGYEADDVIGTLVNRF 119

Query: 129 EKEGFAVTIISTDKDLMQL------VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +     + II+ D+D +QL      V   T  +D   E+   +E+V +K+G+   ++V  
Sbjct: 120 KARDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTEDLYTVENVKEKYGVFAHQVVDY 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GD+ DNIPG+ GIG KTA  LL+EY  LENI  N + IK    +E +    + A L
Sbjct: 180 KALVGDASDNIPGVKGIGDKTAIKLLEEYQTLENIYQNLNNIK-GALKEKLESGKDMAFL 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           S++L  +  D+PI + LE L  ++ +  RL   L  LEF   I R+  + + + A
Sbjct: 239 SKRLATIICDLPIEVNLEELKTKEWDKERLYQILLQLEFKSFIKRLGFSEEINYA 293


>gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
 gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
          Length = 1025

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 302/1058 (28%), Positives = 511/1058 (48%), Gaps = 147/1058 (13%)

Query: 7    LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L +VDG S  +RAF+A    +     G   N+I GF  ML ++++  + + +A    + F
Sbjct: 20   LLVVDGHSLAFRAFFAISADNFSTRSGQATNSIWGFITMLSQVVKKEKPDRLA----IAF 75

Query: 66   DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            D    TFRN + P YK  R   P+ LL QLP+++   +A G+  IE  G+E DD+I T  
Sbjct: 76   DVKGGTFRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGVTYIEKPGYEGDDVIGTLA 135

Query: 126  YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY-----DTVKEEKIDIEHVIKKWGIPPEKM 179
             +    G+   ++S D+D  QL+    T LY       +KE  +D   V +K+ + P++ 
Sbjct: 136  VMGSNAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFKDLKE--MDKNAVYEKYHVTPKQY 193

Query: 180  VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236
              L AL G++ DNIPG+PG+G   AA  + ++G+LENI+ +++ I  KK    RENI   
Sbjct: 194  PDLAALRGETADNIPGVPGVGDGYAAKWINQFGSLENIIEHSNEISGKKGEALRENI--- 250

Query: 237  AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--------- 287
             +  RL+RK+  L  D+ + + ++ L   D +  +L   L  LEF +L  R         
Sbjct: 251  -DQVRLNRKVNALVCDLDLGVTVDDLCFGDVDAAKLGILLSQLEFGELKKRKILKTFSNG 309

Query: 288  ------------VATTYDCDA---------------ANIEPVVLDINTTENKGIAIETEI 320
                         ++TY+ DA                N + ++  I+    K   +E  I
Sbjct: 310  MQQSIENNMRIMFSSTYEGDANDDKLAQSAQSNIDAENFQEMLAGIDLHHVK--TVEDFI 367

Query: 321  DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER--LQKLSQYPINNDS---YTKIVNTK 375
            D + ++ +  ++ +   +   N+E T  ++  E    ++L+   I N+S      I+  +
Sbjct: 368  DWENSVSSLLYTKIKKDSK--NTEDTFDQVSSEEENFEELNSEKIINNSRKCAEPILKNQ 425

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
            ++  +  +        F++I D +    +   AI  +T  Q  D +              
Sbjct: 426  EVVIYAHECNKNSKHHFELIADCLIILIANKAAILYTTDLQSSDQA-------------- 471

Query: 436  SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-------- 487
                         +L  L+KF +    + + H+ K    +L     S++ F+        
Sbjct: 472  -------------LLEMLRKFLQKNSSITVLHDYKKHLGLLK----SLKLFDSNNSFGTP 514

Query: 488  --DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAI 543
              D  L SY+L+    +  + ++A+ +L     E  + ++      +D + D++V     
Sbjct: 515  LLDTRLASYLLEPDFRAETLENMAEHYLDIQSVEDNLGENEAKQGELDLLIDNEVSSSEE 574

Query: 544  ENSNVILQL--WLLLRPKLIVEKL-LHVYERLDK------------PMIDVVSQMEITGI 588
            E +    Q      L+  L++  L LH    LD             P+  V+  ME  G 
Sbjct: 575  ETNEKQTQAREAKFLKTALLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGA 634

Query: 589  QID----QDLLKQVSA--EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
             +D      +LKQ SA  E ++N+       + ++G   NL SPKQL  ILF        
Sbjct: 635  AVDMQRLSGMLKQFSADAEFAQNM------AWKVAGSSVNLQSPKQLQQILFEHFGLKPT 688

Query: 643  AKTKTGQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRT 696
             +TK G + T A+ L+ +    +P       +  +L+ R+ +K+K     SL +  +   
Sbjct: 689  RRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDD 747

Query: 697  QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIEL 755
            +R+HT +      TGRL+S +PNLQNIP +   G++IR AFI     + L+S DYSQ+EL
Sbjct: 748  RRIHTTFEQTIAATGRLSSADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 807

Query: 756  RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
            RI+AH +    L + F + +D H+ VA+ ++ + +E+V+P  R H K +++ + YG+S +
Sbjct: 808  RIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAYGLSTY 867

Query: 816  RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
             LA QL I  +EA     +YF  F  +H+Y+E   +  ++ GY ET+FGRR ++ +++S 
Sbjct: 868  GLAKQLSISPAEAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSN 927

Query: 876  KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
              + R   ER A+NAPIQG+AADI + AM+ V   L + K+ ++++LQIHDEL+ E+   
Sbjct: 928  NRASREAAERGALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHG 987

Query: 936  EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            E      I+  +ME A    ++L VPL V+  V  +WQ
Sbjct: 988  EQAQVENIVRKAMENA----VHLDVPLSVSTGVGVDWQ 1021


>gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74]
 gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74]
          Length = 1024

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/534 (39%), Positives = 339/534 (63%), Gaps = 13/534 (2%)

Query: 446  TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504
             + I+   K  FEN    K+G N+KYD L+L +YG+ ++G   D M+  Y+++     H+
Sbjct: 493  AQAIVDQFKPVFENPTIEKVGQNLKYDLLMLKKYGVEVQGKLFDTMIAHYLIEP-EMRHN 551

Query: 505  IASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +  +A  +L+Y+  EI     K  K  + +  +   +V ++A E++++ LQL     P+L
Sbjct: 552  MDMMAMTYLNYSPVEIEALIGKKGKGQLTMRDVDIQKVVDYAGEDADITLQLKHAFAPRL 611

Query: 561  IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
              + L  ++++++ P++ V++ +E+ GI+ID + L ++SA +  ++  +++ I++++GE 
Sbjct: 612  EKDNLHKLFDQVEMPLVQVLTDLELEGIKIDTNALSELSATLEVDMRQVQQEIFEIAGES 671

Query: 621  FNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FN+ SPKQLG++LF KLK    AK TKTGQ+ T  + L ++   ++ I + IL++R+L K
Sbjct: 672  FNIGSPKQLGEVLFDKLKLDKNAKKTKTGQYATGEEILSKLEA-EHEIARKILDYRELIK 730

Query: 680  IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
            +K+TY D+LP  I+KRT R+HT ++ A   TGRL+S  PNLQNIPI+T  GQ+IR+AF+ 
Sbjct: 731  LKNTYVDALPLLISKRTGRIHTSFNQAVAATGRLSSTNPNLQNIPIRTPRGQEIRKAFVP 790

Query: 740  -PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
              P   ++SADYSQIELRI+A  +    + + F N +DIH   A+++F V +++V+  MR
Sbjct: 791  RGPEFVIMSADYSQIELRIMAAFSGDQTMLEAFNNGVDIHTQTASKVFHVGLDEVTSDMR 850

Query: 799  RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
            R AKTINF IIYGIS F LA +L+IPR EA   I+ YF  FP + +YI++     R  GY
Sbjct: 851  RKAKTINFGIIYGISSFGLAQRLKIPRKEAGQIIEEYFAGFPAVKDYIDQCIEKARGFGY 910

Query: 859  VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
             ETI GRR +  +INS   + R   ER A+NAPIQGSAAD+ + AMI +H+ ++  +L +
Sbjct: 911  AETILGRRRYLRDINSRNQTDRMFAERNAVNAPIQGSAADMLKIAMIQIHEFMQAERLKS 970

Query: 919  KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            KM+L +HDELVF+   +EI    ++ V  + K  +P   + V ++  I    NW
Sbjct: 971  KMILTVHDELVFDAHRDEIDLL-RVRVDEIMKNAIP---MGVKMETGIGTGENW 1020



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 168/296 (56%), Gaps = 16/296 (5%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA +A   +P +S +  G+  +A+ GF N + ++L   +     +H  V
Sbjct: 8   LFLLDALALIYRAHFAFSKSPRISSR--GINTSAVFGFMNAMIEVLTKEK----PTHIGV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +P YKANR   PE +   +P ++   +A  IP + + G+EADDII T
Sbjct: 62  AFDSAKKTFRHESFPMYKANRQSQPEDISVAMPYIKQIVEAMHIPMLILDGYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIPP-EK 178
               A    F V +++ DKD  QLV     +Y         EK+ +  V+++W I   E+
Sbjct: 122 IAKKAALADFEVYMMTPDKDYGQLVEEHIHIYKPAFMGKPAEKLGVTEVLERWQIERIEQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  +  L GDS+DNIPGIPGIG KTA  L+ ++G++EN++  A  +K  K +EN++ +A+
Sbjct: 182 VTDMLGLMGDSVDNIPGIPGIGEKTAQKLIADFGSVENLIARADELK-GKLKENVVNFAQ 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-VATTYD 293
              +S++L  +  DVP+    EHL   + + PRL + L  LEF ++  R +  +YD
Sbjct: 241 QGLMSKELATIHLDVPVPFDEEHLRHTEYDKPRLAALLDELEFRQMKTRLLGGSYD 296


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/535 (40%), Positives = 331/535 (61%), Gaps = 11/535 (2%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504
           ++++L+ LK   E+   LK+G N+KYD  +L   GI+++G   D ML SYV +S  S H+
Sbjct: 399 SEQVLAKLKPLLEDPSLLKVGQNLKYDMSILANVGIALKGVAFDTMLESYVFNSVASKHN 458

Query: 505 IASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL- 560
           +  +A K+L +   + +EI       +  ++I       +A E++++ L+L   L P+L 
Sbjct: 459 MDDLALKYLGHKNISFEEIAGKGVKQLTFNQIPLETAAPYAAEDADITLRLHQHLWPRLQ 518

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
              +L  V+  ++ P++ ++SQ+E  G+ ID  LL Q S E+++ +  LE+  Y+++GE 
Sbjct: 519 KASELASVFTDIELPLVSILSQIERQGVLIDSMLLGQQSDELARKIDELEQKAYEIAGEP 578

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNL S KQL  + F KL +P   KT  G   T  + L ++   D P+ K ILE R LSK+
Sbjct: 579 FNLGSTKQLQALFFEKLGYPVLKKTPKGAPSTAEEVLVELAL-DYPLPKIILEHRSLSKL 637

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           KSTY D LP  ++ +T RVHT Y  A   TGRL+S EPNLQNIPI+T+ G++IR AF++P
Sbjct: 638 KSTYTDKLPLMVDGKTGRVHTSYHQAIAATGRLSSSEPNLQNIPIRTEEGRRIRHAFVAP 697

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
             +K+++ADYSQIELRI+AH+++   L   F    DIHR  AAE+F V+  +V+ + RR 
Sbjct: 698 EGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSEVTSEQRRR 757

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +NF +IYG+S F LA QL IPR EA  YI  YF R+PG+ +Y+E T+    + GYV 
Sbjct: 758 AKAVNFGLIYGMSAFGLARQLDIPRHEAQQYIDIYFKRYPGVLKYMEDTRAAAAEQGYVS 817

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATK 919
           T++GRR++   I    +  R   ERAAINAP+QG+AADI ++AMI++ + +E + +    
Sbjct: 818 TLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIAQWIETETQGEIT 877

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           M++Q+HDELVFEV  ++  +    +   M +A     +L V L     + +NW++
Sbjct: 878 MIMQVHDELVFEVDADKADSLKLKVCELMAQAA----SLDVELLAEAGIGDNWEQ 928



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 163/292 (55%), Gaps = 13/292 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     +  AV
Sbjct: 20  ENPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----TQMAV 74

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD    TFRNE+Y +YKA+RP +P+ L  Q+ PL R+  +A G+P + I G EADD+I 
Sbjct: 75  VFDAKGKTFRNEMYAEYKAHRPPMPDDLRTQIEPLHRI-IRALGLPLVCIPGVEADDVIG 133

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A +EG AV I + DKD+ QLV     L +T+    +  + V +K+G+ PE ++ L
Sbjct: 134 TIARQASQEGRAVLISTGDKDMAQLVDDKITLINTMTNTILGPDEVSEKFGVGPELIIDL 193

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236
            AL GD  DNIPG+PG+G KTA  +LQ  G +E IL N  ++ +      K     I E+
Sbjct: 194 LALQGDKADNIPGLPGVGEKTALAMLQGVGGVEAILANPEKMPELGFRGAKTMPAKIAEH 253

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +  +LS +L  ++ DV +      L ++  +   LI     +EF + +  V
Sbjct: 254 GDMLKLSYELATIKCDVELEQDWHQLNIQGADRDELIKCYGEMEFKRWLAEV 305


>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/514 (42%), Positives = 322/514 (62%), Gaps = 30/514 (5%)

Query: 467 HNIKYD-KLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
             + YD K +LH+        ++   D+ML SYVLDS RSS+D+ ++   ++SY   +I 
Sbjct: 358 QKVVYDLKNILHKVDFDEANQIKNCNDVMLASYVLDSTRSSYDLETL---FISYLNTDI- 413

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
                         + ++E+    + V+L+ LW  L   + +    +VYE ++ P++ ++
Sbjct: 414 --------------AAIKENRWAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPIL 459

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
            +ME  G ++D++ L++ + EI   LL LE  IY ++GE FN++SPKQL  ILF KLK P
Sbjct: 460 YEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWFNINSPKQLSYILFEKLKLP 519

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KTKTG + T A+ LE++    + II  IL++R  +KI +TY   L   IN  T R+H
Sbjct: 520 VVKKTKTG-YSTDAEVLEEL-YDKHDIIPLILDYRMYTKILTTYCQGLVQAINPATGRIH 577

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T +    T TGRLAS EPNLQNIP+K D G+ IR+AF+      LI ADYSQIELRILAH
Sbjct: 578 TNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYSQIELRILAH 637

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           I++   L   F+N+LDIH   AAEIFGV+I +V+P MR  AK +NF I+YGIS + L+  
Sbjct: 638 ISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGISDYGLSRD 697

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           ++I R EAA++I RYF ++P + EY++    F R+NG+V TIF R+ +  +I S   ++R
Sbjct: 698 IKISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKNLR 757

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           N  ER A+N+PIQGSAADI + AMI V+K L+++ L ++++LQ+HDEL+ E P EE    
Sbjct: 758 NYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKEIV 817

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +I+   ME A L    L+VPL V +K  +NW E
Sbjct: 818 KEIVKSEMENAVL----LKVPLVVEVKEGSNWYE 847



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 162/295 (54%), Gaps = 12/295 (4%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           + DG+S +YRAF+A P L+    G+P NAI GF N+L K L + + +    +  V FD  
Sbjct: 5   IFDGNSILYRAFFALPQLT-TSTGIPTNAIYGFLNVLLKYLDSEKPD----YVTVAFDKK 59

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R   Y +YKANR  +P+ L  Q+P VR    A  IP +E +G+EADD+I T     
Sbjct: 60  GRAVRKSEYEEYKANRKPMPDSLQVQIPYVREILAALNIPVLECEGYEADDVIGTLVNRF 119

Query: 129 EKEGFAVTIISTDKDLMQL------VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +     + II+ D+D +QL      V   T  +D   E+   +E+V +K+G+   ++V  
Sbjct: 120 KALDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTEDLYTVENVKEKYGVFAHQVVDY 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GD+ DNIPG+ GIG KTA  LL+EY  LENI  N + IK    +E +    + A L
Sbjct: 180 KALVGDASDNIPGVKGIGDKTAIKLLEEYQTLENIYQNLNNIK-GALKEKLESGKDMAFL 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           S++L  +  D+PI + LE L  ++ +  RL   L  LEF   I R+  + + + A
Sbjct: 239 SKRLATIICDLPIEVNLEELKTKEWDKERLYQILLQLEFKSFIKRLGFSEEINYA 293


>gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 1015

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 302/1053 (28%), Positives = 506/1053 (48%), Gaps = 147/1053 (13%)

Query: 7    LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L +VDG S  +RAF+A    +     G   N+I GF  ML ++++  + + +A    + F
Sbjct: 20   LLVVDGHSLAFRAFFAISADNFSTRSGQATNSIWGFITMLSQVVKKEKPDRLA----IAF 75

Query: 66   DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            D    TFRN + P YK  R   P+ LL QLP+++   +A G+  IE  G+E DD+I T  
Sbjct: 76   DVKGGTFRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGVTYIEKPGYEGDDVIGTLA 135

Query: 126  YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             +    G+   ++S D+D  QL+    T LY     K+ +K+D   V +K+ + P++   
Sbjct: 136  VMGSNAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFKDLKKMDKNAVYEKYHVTPKQYPD 195

Query: 182  LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAE 238
            L AL G++ DNIPG+PG+G   AA  + ++G+LENI+ +++ I  KK    RENI    +
Sbjct: 196  LAALRGETADNIPGVPGVGDGYAAKWINQFGSLENIIEHSNEISGKKGEALRENI----D 251

Query: 239  TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR----------- 287
              RL+RK+  L  D+ + + ++ L   D +  +L   L  LEF +L  R           
Sbjct: 252  QVRLNRKVNALVCDLDLGVTVDDLCFGDVDAVKLGILLSQLEFGELKKRKILKTFSNGMQ 311

Query: 288  ----------VATTYDCDA---------------ANIEPVVLDINTTENKGIAIETEIDR 322
                       ++TY+ DA                N + ++  I+    K   +E  ID 
Sbjct: 312  QSIENNMRIMFSSTYEGDANNDKLAQSAQSNIDAENFQEMLAGIDLHHVK--TVEDFIDW 369

Query: 323  DTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK--IVNTKDIQQW 380
            + ++ +  ++ +   +   N+E T ++L  E++       INN       I+  +++  +
Sbjct: 370  ENSVSSLLYTKIKKDSK--NTEDTFEELNSEKI-------INNSRKCAEPILKNQEVVIY 420

Query: 381  VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
              +        F++I D +    +   AI  +T  Q  D +                   
Sbjct: 421  AHECNKNSKHHFELIADCLIILIANKAAILYTTDLQSSDQA------------------- 461

Query: 441  GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE----------DIM 490
                    +L  L+KF +    + + H+ K    +L     S++ F+          D  
Sbjct: 462  --------LLEMLRKFLQKNSSITVLHDYKKHLGLLK----SLKLFDSNNSFGTPLLDTR 509

Query: 491  LMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQV---QEHAIEN 545
            L SY+L+    +  + ++A+ +L     E  + ++      +D + D  +   +E   E 
Sbjct: 510  LASYLLEPDFRAETLENMAEHYLDIQSDEDNLGENEAKQGELDLLIDDGMPASEEETNEK 569

Query: 546  SNVILQLWLLLRPKLIVEKLLHVYERLDK------------PMIDVVSQMEITGIQID-- 591
                 +   L    LI    LH    LD             P+  V+  ME  G  +D  
Sbjct: 570  QTQACEAKFLRTTLLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQ 629

Query: 592  --QDLLKQVSA--EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
                +LKQ SA  E ++N+       + ++G   NL SPKQL  ILF         +TK 
Sbjct: 630  RLSSMLKQFSADAEFAQNM------AWKVAGSSVNLQSPKQLQQILFEHFGLKPTRRTKN 683

Query: 648  GQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            G + T A+ L+ +    +P       +  +L+ R+ +K+K     SL +  +   +R+HT
Sbjct: 684  GSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDDRRIHT 742

Query: 702  FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
             +      TGRL+S +PNLQNIP +   G++IR AFI     + L+S DYSQ+ELRI+AH
Sbjct: 743  TFEQTIAATGRLSSADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAH 802

Query: 761  IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
             +    L + F + +D H+ VA+ ++ + +E+VSP  R H K +++ + YG+S + LA Q
Sbjct: 803  ASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSYGLAYGLSTYGLAKQ 862

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            L I  +EA     +YF  F  +H+Y+E   +  ++ GY ET+FGRR ++ +++S   + R
Sbjct: 863  LSISPAEAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSNNRASR 922

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               ER A+NAPIQG+AADI + AM+ V   L + K+ ++++LQIHDEL+ E+   E    
Sbjct: 923  EAAERGALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGEQAQV 982

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+  +ME A    ++L VPL V+  V  +WQ
Sbjct: 983  ENIVRKAMENA----VHLDVPLNVSTGVGVDWQ 1011


>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/514 (42%), Positives = 322/514 (62%), Gaps = 30/514 (5%)

Query: 467 HNIKYD-KLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
             + YD K +LH+        ++   D+ML SYVLDS RSS+D+ ++   ++SY   +I 
Sbjct: 358 QKVVYDLKNILHKVDFDEANQIKNCNDVMLASYVLDSTRSSYDLETL---FISYLNTDI- 413

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
                         + ++E+    + V+L+ LW  L   + +    +VYE ++ P++ ++
Sbjct: 414 --------------AAIKENRWAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPIL 459

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
            +ME  G ++D++ L++ + EI   LL LE  IY ++GE FN++SPKQL  ILF KLK P
Sbjct: 460 YEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWFNINSPKQLSYILFEKLKLP 519

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KTKTG + T A+ LE++    + II  IL++R  +KI +TY   L   IN  T R+H
Sbjct: 520 VVKKTKTG-YSTDAEVLEEL-YDKHDIIPLILDYRMYTKILTTYCQGLVQAINPATGRIH 577

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T +    T TGRLAS EPNLQNIP+K D G+ IR+AF+      LI ADYSQIELRILAH
Sbjct: 578 TNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYSQIELRILAH 637

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           I++   L   F+N+LDIH   AAEIFGV+I +V+P MR  AK +NF I+YGIS + L+  
Sbjct: 638 ISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGISDYGLSRD 697

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           ++I R EAA++I RYF ++P + EY++    F R+NG+V TIF R+ +  +I S   ++R
Sbjct: 698 IKISRKEAAEFINRYFEKYPRVKEYLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKNLR 757

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           N  ER A+N+PIQGSAADI + AMI V+K L+++ L ++++LQ+HDEL+ E P EE    
Sbjct: 758 NYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKEIV 817

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +I+   ME A L    L+VPL V +K  +NW E
Sbjct: 818 KEIVKSEMENAVL----LKVPLVVEVKEGSNWYE 847



 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 164/295 (55%), Gaps = 12/295 (4%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           + DG+S +YRAF+A P L+    G+P NAI GF N+L K L + + +    + AV FD  
Sbjct: 5   IFDGNSILYRAFFALPQLT-TSTGIPTNAIYGFLNVLLKYLDSEKPD----YVAVAFDKK 59

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R   Y +YKANR  +P+ L  Q+P VR    A  IP ++ +G+EADD+I T     
Sbjct: 60  GRAVRKSEYEEYKANRKPMPDSLQVQIPYVREILAALNIPVLKCEGYEADDVIGTLVNRF 119

Query: 129 EKEGFAVTIISTDKDLMQL------VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           + +   + II+ D+D +QL      V   T  +D   E+   +E+V +K+G+   ++V  
Sbjct: 120 KAQDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTEDLYTVENVKEKYGVFAHQVVDY 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GD+ DNIPG+ GIG KTA  LL+EY  LENI  N + IK    +E +    + A L
Sbjct: 180 KALVGDASDNIPGVKGIGDKTAIKLLEEYQTLENIYQNLNNIK-GALKEKLESGKDMAFL 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           S++L  +  D+PI + LE L  ++ +  RL   L  LEF   I R+  + + + A
Sbjct: 239 SKRLATIICDLPIEVNLEELKTKEWDKERLYQILLQLEFKSFIKRLGFSEEINYA 293


>gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake]
 gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake]
          Length = 861

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/529 (42%), Positives = 317/529 (59%), Gaps = 40/529 (7%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           + L ++K  F   + LK+ +++K   L+     + +  F DIM+MSYVL+ G   H +  
Sbjct: 362 DALEFIKPIFSLGYILKVIYDVK--TLLKIIPNLDIVAFNDIMVMSYVLNPGVHDHSL-- 417

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV--ILQLWLLLRPKLIVEKL 565
             Q  +SY                        E +I N N   +L L  LLR  L V++L
Sbjct: 418 --QNIISYN----------------------VEQSITNMNAANLLLLHELLRKSLFVDRL 453

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             VYER++KP+I V+  ME  G+ ++ D+LK +SA  S+ +  LE  IY LSG +FN++S
Sbjct: 454 YTVYERVEKPLIRVLDNMEKIGVLVNVDVLKTLSATFSEKINMLESEIYKLSGAEFNIAS 513

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            KQLG+ILF K+    G K  +G + T A+ L  +   D  I   IL+WR L+K+K+TY 
Sbjct: 514 SKQLGNILFDKMGIKKGKKLSSGNYSTDAEVLSDLAFNDVEIADKILKWRHLTKLKTTYT 573

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D L    N  + RVHTFYS+ ST TGRL+S  PNLQNIP++++ G  IRRAFI+    KL
Sbjct: 574 DVLEKQKNSNSGRVHTFYSMVSTATGRLSSSNPNLQNIPVRSEEGNSIRRAFIAKKGYKL 633

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ISADYSQIELRI+AHIA +      F  + DIH + A +IF  N EK+   +RR AK+IN
Sbjct: 634 ISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITAKQIF--NTEKLDKNLRRRAKSIN 691

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F IIYG+S F LA QL I RSEA+ YI  YF  +P I  Y+E  K + + +GY  TIFGR
Sbjct: 692 FGIIYGMSAFGLAKQLSISRSEASTYINNYFRSYPEIQSYMENIKAYAKTHGYTRTIFGR 751

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           +    +INS   + RN +ERAAINAP+QG++ADI + +MI +   L++  L    +LQ+H
Sbjct: 752 KCFVKDINSDNVTARNFSERAAINAPLQGTSADIIKMSMIHLFDKLKNGSL----ILQVH 807

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+FE+ EE++  A +II   ME      + L VPLKV+  + +NW +
Sbjct: 808 DELLFEILEEQVDDAVKIIREVMENI----VKLSVPLKVDFNIGDNWAD 852



 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 113/281 (40%), Positives = 178/281 (63%), Gaps = 6/281 (2%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D    ++RA+YA P LS  + GLP+  + GF N+  K ++    +    +  V+FD  
Sbjct: 6   VIDAYGLLFRAYYALPNLSTSY-GLPIGGVYGFINIFLKYIEKHSTD----YLVVVFDTG 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY-I 127
           +  FR++IYP+YK+NRPK+P  L+ Q  L+R A  AF I + E+ G+EADD+IAT T   
Sbjct: 61  SKNFRHDIYPEYKSNRPKLPNDLISQFSLLREAVSAFNIASEEVIGYEADDVIATLTKKY 120

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           ++ +   VT++++DKDL+QL++    ++D +K   I+ E V  K+GI   +++   +LTG
Sbjct: 121 SQLQDVEVTVVTSDKDLLQLLNYGIRIFDPIKNRYIEEEDVHNKFGISSNQLLDFLSLTG 180

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DNIPG+PGIG KTAA LL ++G+L ++L+ A  IK  + RE+I++Y++ A LSR+LV
Sbjct: 181 DASDNIPGVPGIGVKTAAKLLNDFGSLNDLLLRAQEIKTNRCRESIVQYSDQAILSRQLV 240

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            L   V I   +E  I ++     L +FLK  E   LIN+V
Sbjct: 241 TLCDTVDICGGIEKYIFQNSEIHELTAFLKKYELQSLINKV 281


>gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 915

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/611 (34%), Positives = 354/611 (57%), Gaps = 23/611 (3%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +   ++I+   ++L   G  +    T  +DA  +  + ++++            E  
Sbjct: 322 YRLVTTDEEIKTLAERLAGAGRFALDTETTGLDALSADLVGLSLAPAAG--------EGY 373

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ +  H+  +  G+   T E+  YL     +    KI HN KYD  +L   G+ + G +
Sbjct: 374 YLPVG-HSGVE--GRQWTTDELKRYLGPVLADVGIGKIAHNAKYDLHILAGAGLLVAGLD 430

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQVQEHAI 543
            D ML +++L  G SS  +  +A   L      I   +   +    I      +  ++A 
Sbjct: 431 FDTMLAAHLL--GESSLSLKGLAFNRLGIEMTPITALIGEGRHQKCISTCGLRETADYAC 488

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            ++++ L+L+ LL P+L  E    +++ ++ P++ V+  ME  GI +D  +L  +SA + 
Sbjct: 489 ADADMTLRLYQLLLPELEKENQSRLFDEVEMPLVPVIMDMEAAGIAVDVTILSAMSARLG 548

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + L  +E  IY+ +   FN++SP+QLG++LF +LK P G KT++G ++T A  LE +   
Sbjct: 549 RQLTEIEAAIYEQANRPFNIASPRQLGEVLFEELKLPVGRKTRSG-YRTDAAVLEGLK-D 606

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           ++ I++ ILE+R L+K+KSTY D LP  ++ R  R+HT ++ A T TGRL+S +PNLQNI
Sbjct: 607 EHEIVRLILEYRTLAKLKSTYVDILPAMVSARDGRLHTSFNQARTATGRLSSSDPNLQNI 666

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++   G++IR+AF++PP   L++ADYSQI+LR LAH++  + L   F    DIH   A 
Sbjct: 667 PVRGQYGREIRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSALIAAFNAEEDIHTATAM 726

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            ++G+  ++++P+MRR AKT+NF +IYG+S + L     + R E+  +I+ YF R+PG+ 
Sbjct: 727 SLYGLPRDEITPEMRRFAKTVNFGVIYGMSGYGLEQATEMSREESTRFIQTYFERYPGVR 786

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y+  TK   R  GYVETI GRR +  +IN+    +R   ER AIN P+QG++ADI + A
Sbjct: 787 AYLNLTKEQARSRGYVETILGRRRYIPDINAANRQVREAAERMAINMPVQGTSADIIKVA 846

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ V + ++   L +++LLQ+HDEL+FEVP+ E+   S++    M  A    + L+VPL+
Sbjct: 847 MLEVRREMDSQGLESRLLLQVHDELIFEVPQAELMFMSELASRRMSAA----VELKVPLR 902

Query: 964 VNIKVSNNWQE 974
           V+IK   NW E
Sbjct: 903 VDIKYGANWGE 913



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 197/384 (51%), Gaps = 25/384 (6%)

Query: 9   LVDGSSFIYRAFYA----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L D S+ ++RAF+A     PL  R+  G   +A+ GF N+L K+L + R E    ++A+ 
Sbjct: 17  LFDASALVHRAFHAFKTGNPLTVRR-TGEITSAVFGFTNILLKVLADLRPE----YYAIA 71

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+   YKA+RP+ P  L+ Q+  VR    AFGIP  E+ G+EADD++   
Sbjct: 72  FDRKEKTFRHELSEAYKAHRPETPPELIAQMKRVRQLVDAFGIPVFELPGYEADDLLGVL 131

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY----DTVKEEKI-DIEHVIKKWGIPPEK 178
            + +   G AV I++ D D MQLV      LY     T  + ++ D + V++K+G+PP  
Sbjct: 132 AHRSAGAGAAVVIVTGDADAMQLVDDDIKVLYPKAGGTFSDTRLYDADAVVEKFGVPPRL 191

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +   +AL GD+ DNI G+PGIG KTA  LL E+G+++ I  N   ++ +K RE +     
Sbjct: 192 VADFKALVGDASDNIKGVPGIGRKTAVKLLNEFGDIDAIYENIELVRPEKLRELLRREEA 251

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            AR S KL ++ TD+P+   LE   +   +  ++I  L+ LEF  LINR+      + A 
Sbjct: 252 AARESLKLAIIVTDLPVDFDLERCHVGLFDREKVIPLLQELEFGSLINRLPQ----NGAP 307

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           +  VV   N  E +   + T    D  IKT            +++E T        L  L
Sbjct: 308 VPAVVETRNQLECRYRLVTT----DEEIKTLAERLAGAGRFALDTETTGLDALSADLVGL 363

Query: 359 SQYPINNDSYTKIVNTKDIQ--QW 380
           S  P   + Y   V    ++  QW
Sbjct: 364 SLAPAAGEGYYLPVGHSGVEGRQW 387


>gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
 gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
          Length = 864

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/577 (41%), Positives = 348/577 (60%), Gaps = 38/577 (6%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEH 461
           SK IA+ +   ++KD  S+  + I+I +       S   + L KE   +S+LK+  E+  
Sbjct: 319 SKNIAVLVDA-EKKDLVSYATDGIYISVENKCYFIS---HKLLKENSSISFLKQILEDTA 374

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
             KI H+ K+ + VL + GI  R   D ML +Y+L+S +  +DI  +  ++L  T  +I 
Sbjct: 375 IYKITHDGKFTRNVLRQLGIDFRCQFDTMLAAYLLESSKPRYDIPILVMEYLGKTMSDIP 434

Query: 522 K-SRKSS--IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
               K+S    + KI D ++++                    +++KL +    ++ P   
Sbjct: 435 SFDEKTSYLFELKKIMDEKIKD-------------------CLMDKLFY---EVEMPFSV 472

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V++ ME  GI++D   L+++S    K L +L E IYDL+G +FN++SPKQLG+ILF KL 
Sbjct: 473 VLADMEHAGIKVDFAKLQELSERFGKKLAALTEEIYDLAGTEFNINSPKQLGEILFEKLS 532

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   +TKTG + T A+ LE++    +PII+ ILE+R L K+KSTYAD L   ++K+T R
Sbjct: 533 LPVIKRTKTG-YSTDAEVLEKLRPS-HPIIEKILEYRFLMKMKSTYADGLSALVDKKTGR 590

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRI 757
           ++T ++   T TGR++S EPNLQNIP+KT+ G+ IR  F S  P   L+S DYSQIELR+
Sbjct: 591 IYTSFNQTVTSTGRISSTEPNLQNIPVKTEEGKHIRGVFTSDGPGHVLLSGDYSQIELRV 650

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH+++   L + F +  DIHR  A+E+FGV  E+V+P +R  AK +NF IIYGIS + L
Sbjct: 651 LAHMSQDPGLIEAFVSGEDIHRRTASEVFGVPPEEVTPLLRDKAKAVNFGIIYGISDYGL 710

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A  L I   EA +YI  YF R+PG+ +YI +T    +  GYV T+  RR +  +INS   
Sbjct: 711 AQNLGISNQEAKEYIDAYFARYPGVRDYIRETIRSAKALGYVTTLLNRRRYIPDINSRNY 770

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            +R+  ER A+N PIQGSAADI + AM+ VH +L  + L  K+LLQ+HDEL+ +VPEEE+
Sbjct: 771 HLRSFAERTAVNTPIQGSAADIIKIAMVKVHDNLRQNNLKAKILLQVHDELILDVPEEEL 830

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           T   +I+   ME A    I LRVPL V+ K   NW+E
Sbjct: 831 TAVKEILKQHMENA----IPLRVPLVVDFKQGYNWEE 863



 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 180/309 (58%), Gaps = 14/309 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG+S ++RAF+A P L R   G+  NA+ GF NML+++LQ    E    +  V FD
Sbjct: 4   MLLIDGNSLLHRAFHALPPL-RTSKGVHTNAVYGFLNMLFRILQ----EENPDYVTVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y  YKA RPK P+ L+ Q  +++   +A  I  IE  GFEADDI+ T + 
Sbjct: 59  KKGPTFRHDEYAAYKATRPKTPDELIGQFDILKEILKALNINFIEADGFEADDILGTISK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
             E+EG    I++ DKD +QLVS  T +  T K     E  D E V  ++GI PE +  +
Sbjct: 119 KGEQEGIFSIIVTGDKDALQLVSSNTNVLLTKKGISEMETYDTEKVKSRYGIRPEAVADM 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+PG+G KTAA L+QE+  L+N+L N  ++K  K REN+ +YAE A  
Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAAKLIQEFKTLDNVLKNTDKLKG-KVRENLEKYAEQAEA 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+ L  +  DVP+    + ++  + +  +LI+  + LEF  LI+RV       A +I+  
Sbjct: 238 SKYLATIVRDVPLEFNPDDIVYCEPDYDKLINLFRDLEFYSLIDRVKIP----ANSIDTK 293

Query: 303 VLDINTTEN 311
             D  TT+N
Sbjct: 294 EFDTETTQN 302


>gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi]
          Length = 850

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 349/603 (57%), Gaps = 68/603 (11%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +T+D   +++K E +G          + AFH+K   IA  T+++              LS
Sbjct: 304 HTEDPVAFLRKCENVG----------LLAFHAK---IADGTINE--------------LS 336

Query: 433 VHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490
           V   ++   T +    +  +   ++   ++  LKI H+ K    ++ R+   +  F+D+M
Sbjct: 337 VAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPDLGAFDDVM 392

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           LMSY LD+G   H +A +A ++L                         Q+     +  ++
Sbjct: 393 LMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFPARMACTLV 428

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           QL  ++R KL++++L  VY +L++P++ V+ +M+  G+++D ++LKQ+S +   ++ SLE
Sbjct: 429 QLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLE 488

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIK 669
           + IYDL+G  FN++S +QLG +LF ++   S AK   +G + T A+ L ++      I  
Sbjct: 489 KEIYDLAGCTFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIAD 548

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            +L+WR  SK+KSTY D+L   +   T+RVHT YS+ ST TGR++S  PNLQNIPI++  
Sbjct: 549 KVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPIRSKE 608

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           G +IR+AF++    KL+SADYSQ+EL+I+AHIA +      F    DIH + A +IFG  
Sbjct: 609 GTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDG 668

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +    P++RR AK+INF IIYG+SPF LA  + I R EA+ Y+ +YF  +P I  Y+E  
Sbjct: 669 V--TDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPEIKSYMEAI 726

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K + R+ GY  T FGR+ +   INS + ++R   ERAAINAPIQG+AAD+ ++AMI++  
Sbjct: 727 KAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKKAMINLRN 786

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            LE       ++LQ+HDEL+ EVPE  +   ++++   ME       N  VPLKV+I V 
Sbjct: 787 KLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVPLKVDIGVG 838

Query: 970 NNW 972
           ++W
Sbjct: 839 SSW 841



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/284 (39%), Positives = 172/284 (60%), Gaps = 5/284 (1%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +VD   F++RA+YA P L     G P+  + GF N+L K L        A + AV+FD  
Sbjct: 6   VVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFDTG 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +  FR+ +YP YK NRP++PE LL Q   +R A  A GI + E+  FEADD+IAT +   
Sbjct: 61  SKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKY 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
             E   V +I+ DKDL+QL+     ++D +K + +  E+V+ K+G+ P+K++ + ALTGD
Sbjct: 121 ASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLLDVLALTGD 180

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + DNIPG+P IG KTAA L+ ++G+L+N+L  A +++QKK RE ++++A+ A LSR LV 
Sbjct: 181 ASDNIPGVPSIGVKTAARLINQFGSLDNVLSCAEKVEQKKCREMLIQHADQALLSRDLVS 240

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           L+  V     L     +  +  +L++FL+  E   L  ++   Y
Sbjct: 241 LQRAVEFDGDLNKYAKKLPDSEQLLAFLEKYELNSLRGKIEQCY 284


>gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment']
          Length = 873

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/533 (39%), Positives = 324/533 (60%), Gaps = 12/533 (2%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501
           + +T   L  ++     E   KIGH++K     + + G+++RG   D M+ SY+L+  RS
Sbjct: 349 DAMTDSYLERVRPVLAGERPGKIGHDLKRIMTAIGKKGVALRGLSFDTMVASYLLNPNRS 408

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H +A++  + L    ++   +R  +              A E ++++ QL   L P+L 
Sbjct: 409 DHSLATLVFELLGVKWEQGPGARGGND-----GRETAMRGAAEEAHLVWQLKEALLPQLG 463

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
              LL ++  ++ P+I+V++ ME  G  +D D L ++  E+   L  LE  I+ L+GE F
Sbjct: 464 QAGLLPLFTTIEMPLIEVLASMEEVGFSVDTDQLSELGKELESQLSRLESRIFALAGEHF 523

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++SPKQL ++LF +LK     +TKTG + T  + L+++    + +   +L +R L+K+K
Sbjct: 524 NINSPKQLAEVLFQRLKLTPLKRTKTG-YSTNVEVLQRLAV-THELPAEVLNYRSLAKLK 581

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D L     + + R+HT ++   T TGRL+S EPNLQNIP++T++G++IR+AF++  
Sbjct: 582 STYVDVLLRLAERTSGRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEVGRRIRQAFVASE 641

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             +L+SADYSQIELRILAH+++   L   F    D+HR  AAE+FGV  E V+ +MRR A
Sbjct: 642 GHRLLSADYSQIELRILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEAVTVEMRRRA 701

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K INF I+YG+SPF LA +L I + EAA YI RYF  + G+  +I++T    R+ G+V T
Sbjct: 702 KVINFGIVYGMSPFGLAAELEISQEEAALYIDRYFQIYHGVKAFIDRTICEARELGFVST 761

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
            +GRR    E+ S   ++R + ER A+N PIQGSAAD+ + AMI++ + L   +L T+M+
Sbjct: 762 FWGRRRAIPELKSSDQTVRQLGERLAVNTPIQGSAADLIKVAMIAISRRLRSEQLETRMI 821

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQIHDEL+FEVPE E+  A ++    ME A      L VPLKV+I V  +W E
Sbjct: 822 LQIHDELLFEVPEVELDVARRMATEEMEWAA----TLSVPLKVDIGVGTSWAE 870



 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 115/278 (41%), Positives = 171/278 (61%), Gaps = 5/278 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGSS+++RA++A P LS   +G+P  A+ GF NML K++++ R E++     V+FD
Sbjct: 6   LYLIDGSSYVFRAYHALPPLS-NSEGIPTGAVYGFTNMLLKIIRDERPEAMV----VVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T R+  Y DYKANR ++P+ L  QLP +    +A  IP +  QG EADD+I +   
Sbjct: 61  SAGPTERHTRYADYKANRAQMPDDLSRQLPYIHRVVEAMRIPLLMQQGQEADDLIGSLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  + F VTI + DKD++QLV P   +YD++KE       V+K++G+PP ++V +  L 
Sbjct: 121 QAAAQDFRVTIATGDKDMLQLVGPEIRVYDSMKETVYGESEVVKRFGVPPGQVVEVMGLM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD IDNIPG+ GIG KTA  L+Q++GN+E  +     IK  K RE +    E ARLSR+L
Sbjct: 181 GDPIDNIPGVHGIGEKTARNLIQQFGNIEETVARLHEIKSAKVREIVRSGVEQARLSREL 240

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
             +RTD+ I + L  L L+  +   + +  + L FT L
Sbjct: 241 ARIRTDLQIGLDLGQLTLQAPDHSAMQALFRELGFTAL 278


>gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330]
          Length = 925

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/532 (40%), Positives = 331/532 (62%), Gaps = 11/532 (2%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIAS 507
           + S L+ F E+E   KIG N+KYD+ +     I ++G   D ML SY+++S   +H++  
Sbjct: 397 VKSSLQPFLESESLGKIGQNLKYDQHIFKNQDIDLKGIVGDAMLASYIVES-HLTHNLDD 455

Query: 508 IAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +A +WL   + + + +       I    +      ++A ++++  L++   LR ++   +
Sbjct: 456 LAARWLGLETISYESLCGKGAKEISFADVDVQAATQYACQDADFALRIEQHLRTQMDAAQ 515

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +Y++++ P+  V+ +ME  G+QID+  L Q SA +   LL LE+  Y+L+G+ FNL+
Sbjct: 516 L-ALYQQMELPVAQVLFEMERAGVQIDRAELAQQSATLGAELLQLEQQAYELAGQPFNLN 574

Query: 625 SPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           SPKQL +ILF KL  P+    KT  G   T    LE++   D P+ K IL+ R LSK+KS
Sbjct: 575 SPKQLQEILFDKLGIPTKGVKKTAKGGLSTDESVLEKL-ADDYPLPKIILQTRSLSKLKS 633

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D L   I  +T RVHT Y+ A  +TGRLAS  PNLQNIPI+T+ G+++RRAF +P  
Sbjct: 634 TYTDKLAEMILPQTGRVHTNYAQAVAITGRLASNNPNLQNIPIRTEQGRRVRRAFTAPQN 693

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             ++SADYSQIELRI+AH++  T L   F N+ D+HR  AAE+FG+  E ++ + RR+AK
Sbjct: 694 CVIVSADYSQIELRIMAHLSGDTTLQAAFHNNEDVHRRTAAEVFGMAPEHITSEQRRYAK 753

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           TINF +IYG+S + LA  L I    A  +I+RYF R+ G+ +Y+++TK   +Q GYVET+
Sbjct: 754 TINFGLIYGMSEYGLAKSLGIDAMSAKMFIQRYFARYTGVADYMQRTKEQAQQLGYVETL 813

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           FGRR++  +I++  +  R   ERAAINAP+QG+A+D+ +RAMISV   L    L +++++
Sbjct: 814 FGRRLYLPDIHAKNAMTRAGAERAAINAPMQGTASDLIKRAMISVQDFLRQSSLHSRLVM 873

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q+HDELV EV + E+    + +   M +  +  +N  VPL   + V  NW +
Sbjct: 874 QVHDELVLEVHDSELALIREKLPELMAQVGVGVLN--VPLLAEVGVGANWDD 923



 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 107/253 (42%), Positives = 146/253 (57%), Gaps = 6/253 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAFYA   LS   DG P NA+ G  NML +L    R E  A + AV+FD
Sbjct: 6   LLLVDGSSYLYRAFYAMTHLSAP-DGTPTNAVYGVLNMLKRL----RAEQSADYCAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ +Y DYKA RP +P+ L PQ  ++       G   ++I G EADD+I T   
Sbjct: 61  AKGKNFRHALYEDYKATRPPMPDELRPQADMLPDLVDLMGWKVLKISGVEADDVIGTLAI 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +   V I + DKD+ QLVSP   L +T+K E +D + V+ K+G+ PE++    AL 
Sbjct: 121 AAAAQDMNVIISTGDKDMAQLVSPRITLVNTMKNEMLDHDGVVAKFGVKPEQIRDFLALM 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD +DN+PG+   G KTAA  L EYG+L+ I+  A   K  K  EN+        LS +L
Sbjct: 181 GDKVDNVPGVEKCGEKTAAKWLAEYGSLDEIMRRADEFK-GKIGENLRAALVQLPLSYEL 239

Query: 247 VMLRTDVPITIPL 259
           V ++TDV ++  L
Sbjct: 240 VTIKTDVDLSTDL 252


>gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
 gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
          Length = 863

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/487 (44%), Positives = 308/487 (63%), Gaps = 33/487 (6%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +YVL +G +S D A I  ++++             +P D  S SQ+        N
Sbjct: 408 DSQLAAYVLKAGDTS-DFAKIYTRFMA-----------DVLP-DLASPSQLY-------N 447

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
             L     L+ +L   +   VY+ LD P+  V+  ME  G++ID+DLL + S E++K++ 
Sbjct: 448 AQLNFATTLKSQLQTVQGEKVYQELDLPLARVLLSMERLGVRIDKDLLAKQSEELAKDIA 507

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            +E+ I++ +GE FN+ SPKQLG ILF KL  P+G KTKTG     + D E +   ++PI
Sbjct: 508 EIEKQIHEAAGESFNVGSPKQLGVILFEKLGLPAGKKTKTG----YSTDEEVLLGLEHPI 563

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            K +L+WR++SK+KSTY D+LP  I+ + +RVHT ++ A T TGRL+S +PNLQNIPI+T
Sbjct: 564 AKLVLQWREMSKLKSTYVDALPTMIDPKDERVHTSFNQALTTTGRLSSTQPNLQNIPIRT 623

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
             GQ++R+AFI+ P  KL+S DYSQIELRILAHI++   L + F   LDIH   AAE+FG
Sbjct: 624 ARGQQVRKAFIAAPRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVFG 683

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V ++ V+ + RR AK +NF I YG   F LA  L I R+EA D I+RYF+RF  + EYI+
Sbjct: 684 VPLKDVTAEHRRSAKAVNFGIAYGQGAFGLAENLGISRTEAKDIIERYFNRFKNVREYID 743

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
            T     + GYVET+FGRR + DE+ S   +++   ERAAINAPIQG+A+D+ ++AMI V
Sbjct: 744 GTIKMAHEKGYVETLFGRRRYIDELQSKNMALKKFGERAAINAPIQGTASDLVKKAMIEV 803

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            +     K+  +MLLQ+HDEL+FE  EE +   S  +V  ME      + L+VPLKVN  
Sbjct: 804 FE-----KVPVRMLLQVHDELIFEDFEENLQKHSPQLVSIMENV----MKLKVPLKVNYA 854

Query: 968 VSNNWQE 974
           + NNW E
Sbjct: 855 IGNNWDE 861



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 165/288 (57%), Gaps = 5/288 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+D S+  +RAFYA   LS    G+PVNA+ GF +M+ KLL+  + E    +    +D
Sbjct: 4   IYLIDVSAMFFRAFYAIRALSSP-SGVPVNAVYGFLSMMIKLLKEEKPE----YLVFCYD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FR  +Y  YKA+R ++P+ L  Q+P ++      G+PA E++ FEADDII T T 
Sbjct: 59  RKEPSFRKTMYDGYKAHRTEMPDELAQQIPYIKRLADLLGVPAFEVESFEADDIIGTLTK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            + + G  V I+S DKD  QL+     LYDT+K  + + E V +KWG+ P++ +   A+ 
Sbjct: 119 WSRRNGMEVFIVSGDKDFGQLIEDGVTLYDTMKGVRYNAEGVFEKWGVRPDQFIDYLAIV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DN+PG+ G+G K A  LL+++ ++E+I  N  +++ K  RE ++   + A LS+KL
Sbjct: 179 GDASDNVPGVKGVGEKGAIKLLEQFKHVEDIYENIDKVESKSVREKLIASKDNALLSKKL 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           V +  DVP+   LE   L+      L +FL  L F      +  T D 
Sbjct: 239 VTISCDVPMPDDLEAYKLKPFKADELRAFLHELNFKSFEKSLFGTVDT 286


>gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 462

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/452 (44%), Positives = 293/452 (64%), Gaps = 8/452 (1%)

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEIT 586
           IP   +   +  ++A E++++ L+L  +L PKL+ E +L  VY  ++ P++ V+ ++E  
Sbjct: 16  IPFSHVGVQEATQYAAEDADITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEAN 75

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+QID + L + SA++S+ ++  ++   DL+G  FNL SPKQL  +LF +LK P   KT 
Sbjct: 76  GVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTP 135

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            GQ  T  + LE I    + + + ILE+R L+K+++TY + LP  I+  T RVHT Y  A
Sbjct: 136 KGQPSTNEEALEAI-VDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQA 194

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRL+S +PNLQNIPI+TD G++IRRAF++P  +KLI+ DYSQIELRI+AH++    
Sbjct: 195 GAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAG 254

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   FE+ +D+H  +AAE+FG  I++V+P  RR AK INF +IYG+S F LA QL I R 
Sbjct: 255 LVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRG 314

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA DYI  YF RF G+ +++E T+   R  GYVET+FGRR++ + I S   + R   ERA
Sbjct: 315 EAQDYIALYFDRFSGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA 374

Query: 887 AINAPIQGSAADITRRAMISVHK--SLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           AINAP+QG+AADI +RAM++V     +  H+    M+LQ+HDELVFE  E  + T    +
Sbjct: 375 AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT----L 430

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           VH +         LRVPL V++ V ++W E +
Sbjct: 431 VHEVSARMAAAAQLRVPLVVDVGVGHHWDEAH 462


>gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 896

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/615 (38%), Positives = 373/615 (60%), Gaps = 30/615 (4%)

Query: 370 KIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           KIV TK+ +   V++L+   S +F   TD+++ + +  + ++      K+  ++ +    
Sbjct: 300 KIVATKEQLDDLVKELKNSSSFAFDTETDSLNTYEANLVGLSFCA---KEGRAYYIPLQH 356

Query: 429 IDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGF 486
             L V           L  EI L  LK  F +    K+ HN K+D+ +L +YG+ +    
Sbjct: 357 RYLGV--------PQQLELEIVLDSLKPVFVDSQKSKVAHNFKFDEKILSKYGVKIVNQV 408

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQEH 541
            D M+M+YVL S    HD+ S++++ L     +YT   +  + ++ + +D+I   +V ++
Sbjct: 409 NDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTT--LAGTGRNQLTLDQIDIEKVAKY 465

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++  +L+      L  +++L+ +Y  ++ P+  +++ ME  G++ID   L + SA
Sbjct: 466 AAEDADITFRLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMEKVGVKIDAAKLIEQSA 525

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            +  ++  LE   YDL+G++FNLSSP QL +ILF K+  P   KT  GQ  T+ + L Q+
Sbjct: 526 NLEDSIKELEIKCYDLAGQEFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQL 585

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PNL
Sbjct: 586 -AEEYEIAALIMKYRHLSKLKNTYTDKLPKMLDVNG-RVHTSYNQTGTVTGRLSSSDPNL 643

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPIK+  G+KIR+AFI+     +++ADYSQIELRI+AH++K   L + F   LDIH  
Sbjct: 644 QNIPIKSPEGRKIRQAFIAEQEFCVVAADYSQIELRIMAHLSKDKNLLKAFNQGLDIHSA 703

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+ G++++ V+ + RR AK INF +IYG+S F LA QL IPR EA +YI  YF+R+P
Sbjct: 704 TAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRGEAQEYIDVYFNRYP 763

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY+   K F +QNGYVETI GRR++  +I+S     RN  ERAAINAP+QG+AADI 
Sbjct: 764 SVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAINAPMQGTAADII 823

Query: 901 RRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
           ++AMI V+   L+++    KM++Q+HDELVFEV + ++   +  I   ME +    + L 
Sbjct: 824 KKAMIDVNTMILQEYNDDIKMVMQVHDELVFEVRKAKLNEITTKIKSIMETS----VKLD 879

Query: 960 VPLKVNIKVSNNWQE 974
           VPL+VN+    +W +
Sbjct: 880 VPLEVNVDSGESWDQ 894



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/279 (38%), Positives = 156/279 (55%), Gaps = 6/279 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPNLTNSQ-GEPTGAIIGVINMLKKLPAMYDTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+E+YP+YKANR  + + L  Q+  +    +  G P I   G EADD+I T   
Sbjct: 59  PKGKNFRHEMYPEYKANRKAMDDELRVQIQPLHQIIENMGFPLIIKDGVEADDVIGTLAR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             E++G+ V I + DKD+ QLV+    LYD++K    D   V++K+ I P++++   AL 
Sbjct: 119 DLEQQGYDVIISTGDKDMAQLVTDNVVLYDSMKNVTTDFAGVLEKYQIRPDQIIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP +G KTA   LQEY ++E I+ N  +I   K  EN+    E  +LS KL
Sbjct: 179 GDSSDNIPGIPKVGPKTAIKWLQEYQDIEGIIANQDKI-TGKVGENLRNNIELLKLSYKL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
             ++ DV + + +E L  ++ N   L       EF  L+
Sbjct: 238 ATIKCDVELNLSIEDLKCKNANKEYLYEVFTRYEFKSLL 276


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 896

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/615 (38%), Positives = 372/615 (60%), Gaps = 30/615 (4%)

Query: 370 KIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           KIV TK+ +   V++L+   S +F   TD+++ + +  + ++      K+  ++ +    
Sbjct: 300 KIVATKEQLDDLVKELKNSSSFAFDTETDSLNTYEANLVGLSFCA---KEGRAYYIPLQH 356

Query: 429 IDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGF 486
             L V           L  EI L  LK  F +    K+ HN K+D+ VL +YG+ +    
Sbjct: 357 RYLGV--------PQQLELEIVLDILKPIFVDSQKSKVAHNFKFDEKVLSKYGVKIVNQV 408

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQEH 541
            D M+M+YVL S    HD+ S++++ L     +YT   +  + ++ + +D+I   +V ++
Sbjct: 409 NDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTT--LAGTGRNQLTLDQIDIEKVAKY 465

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++  +L+      L  +++L+ +Y  ++ P+  +++ ME  G++ID   L + SA
Sbjct: 466 AAEDADITFRLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMERIGVKIDATKLIEQSA 525

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            +  ++  LE   YDL+G++FNLSSP QL +ILF K+  P   KT  GQ  T+ + L Q+
Sbjct: 526 NLEDSIKELEIKCYDLAGQEFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQL 585

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PNL
Sbjct: 586 -AEEYEIAALIMKYRHLSKLKNTYTDKLPKMLDVNG-RVHTSYNQTGTVTGRLSSSDPNL 643

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPIK+  G+KIR+AF++     +++ADYSQIELRI+AH++K   L + F   LDIH  
Sbjct: 644 QNIPIKSPEGRKIRQAFVAEQEFCVVAADYSQIELRIMAHLSKDKNLLKAFNQGLDIHSA 703

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+ G++++ V+ + RR AK INF +IYG+S F LA QL IPR EA +YI  YF+R+P
Sbjct: 704 TAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRGEAQEYIDVYFNRYP 763

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY+   K F +QNGYVETI GRR++  +I+S     RN  ERAAINAP+QG+AADI 
Sbjct: 764 SVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAINAPMQGTAADII 823

Query: 901 RRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
           ++AMI V+   L ++    KM++Q+HDELVFEV + ++   +  I   ME +    + L 
Sbjct: 824 KKAMIDVNTMILREYNDDIKMVMQVHDELVFEVRKAKLNEITTKIKSIMETS----VKLD 879

Query: 960 VPLKVNIKVSNNWQE 974
           VPL+VN+    +W +
Sbjct: 880 VPLEVNVDSGESWDQ 894



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/279 (39%), Positives = 157/279 (56%), Gaps = 6/279 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+FD
Sbjct: 4   IVLVDGSSYLFRAYHALPNLTNSQ-GEPTGAIIGVINMLKKLPAMYNTE----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+E+YP+YKANR  + + L  Q+  +    +  G P I   G EADD+I T   
Sbjct: 59  PKGKNFRHEMYPEYKANRKAMDDELRVQIQPLHQIIENMGFPLIIKDGVEADDVIGTLAR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             E++G+ V I + DKD+ QLV+    LYD++K    DI  V++K+ I P++++   AL 
Sbjct: 119 DLEQQGYDVIISTGDKDMAQLVTDNVVLYDSMKNITTDIAGVLEKYQIRPDQIIDYLALM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGIP +G KTA   LQEY ++E I+ N  +I   K  EN+    E  +LS KL
Sbjct: 179 GDSSDNIPGIPKVGPKTAIKWLQEYQDIEGIIANQDKI-TGKVGENLRNNIELLKLSYKL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
             ++ DV + + +E L  ++ N   L       EF  L+
Sbjct: 238 ATIKCDVELNLSIEDLKCKNANKEYLYEVFTRYEFKSLL 276


>gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
 gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
          Length = 895

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 274/939 (29%), Positives = 461/939 (49%), Gaps = 85/939 (9%)

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD    TFRN++ P YK  R   PE LL QLPL++    A G+  IE  G+E DD
Sbjct: 13  HLAVAFDVKGGTFRNQMLPQYKGTRDAAPEELLSQLPLIQQMLTALGVTYIEKPGYEGDD 72

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWG 173
           +I T   + ++ G+   ++S D+D  QL++   T LY        D++H     V +K+ 
Sbjct: 73  VIGTLASMGDQAGYRTLVLSGDRDAFQLINDNITVLYP--GHHFKDLKHMTPDAVQEKYH 130

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---R 230
           + P +   L AL G++ DNIPG+PG+G   AA  + +YG LE I+ +A  I  KK    R
Sbjct: 131 VSPAQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEQIIEHADEISGKKGEALR 190

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVA 289
           ENI    E  +L+R +  L  D+ + + +  L     +  +L      LEF  +  NRV 
Sbjct: 191 ENI----EQVKLNRSVNALVRDLDLGVSVSDLTFGQVDAGQLDDLFTKLEFGVRTKNRVL 246

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
            T++ D  +      D++ +   G+    +++    +          +T   N     Q+
Sbjct: 247 KTFNADKPSG-----DVHESSKLGLPHVEDVNDPHVV----------ETWVQNHFPVVQE 291

Query: 350 LFLERLQKLS----QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
              ER ++ S    ++    DS T+  + K  Q W    E         ++  M A H +
Sbjct: 292 HLHERHERSSNDIPEFGFEIDSSTRCTD-KVKQSWTLYAEGTSKPGEASLSALMIAVHGE 350

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            I I                                 +  + +++  L++ F+  H   +
Sbjct: 351 AIRI---------------------------------DVFSPDMVQCLQRLFDRYHHSMV 377

Query: 466 GHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKS 523
            H  K    +L   G+ +     D  L  Y+      +  +   A  +L  +   +   +
Sbjct: 378 VHGYKEHAHLLGSIGVELPEPLFDTKLAGYLAHPDFHADTLEQAAAHFLDLHIEAQAEAA 437

Query: 524 RKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            + ++  D+   +DS+  E  +  + ++  L   L   L   +   + + ++ P+  V+ 
Sbjct: 438 TQGTLDFDEPEENDSKNGELILTRTAIVGLLAEYLAGVLDKREQFGLLKSIELPVSQVLH 497

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  G Q+D   L Q+  +++ +    +E  +  +GE+ NL SPKQL  ILF  +    
Sbjct: 498 GMEQVGAQVDMTRLVQMRDQLAADAAQAQETAWQFAGEQVNLQSPKQLQKILFEDMGLKP 557

Query: 642 GAKTKTGQWKTTAQDLEQIN--CGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKR 695
             KTK+G + T A  L+ +     DN      +  +L  R+ +K+K     +L +  N+ 
Sbjct: 558 TKKTKSGSYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLKQI-VQTLIDATNRH 616

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIE 754
             R+HT +      TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+E
Sbjct: 617 DGRIHTTFEQTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVE 676

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+A ++    L + F +  D H+ VA+ ++G+ ++ ++   R H K +++ + YG+S 
Sbjct: 677 LRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITSDQRSHVKAMSYGLAYGLST 736

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           + LA QL+I   EA     +YF  F  +HEY+E   +  R+ GY ETIFGRR ++  + S
Sbjct: 737 YGLAQQLKIKPKEAESLKNQYFATFGKVHEYLESLVSSAREKGYTETIFGRRRYFPGLKS 796

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
           P  ++R+  ERAA+NAPIQGSAADI + AMI  + +L++  L ++++LQIHDELV E+  
Sbjct: 797 PNRAVRDAAERAALNAPIQGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAP 856

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            E   A+ ++  +ME A    + + VPL V+  + ++WQ
Sbjct: 857 GEEKQATALVKDAMEHA----VTMAVPLDVSTGIGSDWQ 891


>gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
 gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
          Length = 902

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/515 (42%), Positives = 316/515 (61%), Gaps = 10/515 (1%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
           KIGH++K   +V  ++GI +RG   D M+ +Y+LD G+ ++ I  +A + L     + ++
Sbjct: 391 KIGHDLKTAWIVFKKHGIELRGIAFDTMVAAYLLDPGKQNYGIDRVAAECLGENIDSYED 450

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           +    KS +  D I   +   ++   ++   ++  +L+ KL   +L  ++E+++ P+I V
Sbjct: 451 VTGKGKSQVGFDTIDIGRAAAYSCAAADAARRMHPVLKRKLDESRLTELFEKIELPLITV 510

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME  GI  D + L+ +S +  K L    + IYDL+ EKFN+ SPKQL  ILF KL  
Sbjct: 511 LARMEFRGITADAEKLESLSIDFQKALDRTADTIYDLAKEKFNIQSPKQLAYILFEKLGL 570

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTK+G   T    LE++   ++PI  ++L +R L+K+K TYAD+L   IN RT R+
Sbjct: 571 RVVKKTKSGP-STDMAVLEELAL-EHPIADHVLVFRTLAKLKGTYADALGKLINPRTGRI 628

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y+     TGRL+S +PNLQNIPI+T+ G+KIR AFI  P   L+SADYSQIELRILA
Sbjct: 629 HTSYNQTVAATGRLSSSDPNLQNIPIRTEEGRKIRSAFIPAPGWLLLSADYSQIELRILA 688

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H +K   L + F +  DIHR  AAE+FGV+  +V+P+MRR AKTINF IIYG+ PF LA 
Sbjct: 689 HCSKDEHLLEAFRDDEDIHRRTAAEMFGVSPIEVTPEMRRQAKTINFGIIYGMGPFGLAQ 748

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           +LRI    A   I +YF  + G+  +I+ T    R+ GY ET+ GRR    E+ S   +I
Sbjct: 749 RLRISTKTARTAIDKYFQGYRGVRRFIDTTIELARRLGYSETLLGRRRFIPELQSRNKTI 808

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R + ER AIN P+QG+AAD+ ++AMI    +L    L T MLLQ+HDELVFE P EE+  
Sbjct: 809 RQLGERLAINTPLQGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDELVFETPREELAA 868

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           A +++   ME        L VPLKV +   +NW E
Sbjct: 869 AQELVRRVMEDVW----KLDVPLKVELGWGDNWAE 899



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 117/285 (41%), Positives = 170/285 (59%), Gaps = 14/285 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            +LVDGSS+IYRA+YA   L+    G P  A+ GF  ML K+++  + + I     V+FD
Sbjct: 8   FYLVDGSSYIYRAYYAVSRLTNSR-GFPTGAVLGFAQMLDKVVREKKPDYIC----VVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+E+Y  YKA R K PE ++ Q+P ++   +  GIP +E+ G+EADD+IAT T+
Sbjct: 63  APGPTFRHEMYAPYKATRQKAPEDMIAQIPYIKDLVRFRGIPQMELPGYEADDLIATLTH 122

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            A ++   V ++S+DKDL QL+  P    +D  K+       V  ++G+PP +MV   AL
Sbjct: 123 WAVEQDIEVVVVSSDKDLHQLIDDPVVRQWDPQKDRVFMEWEVEDRYGVPPGRMVDYLAL 182

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DN+PG+ GIG KTA  LLQE+G+L+ I  N +R+     R+ + ++ E A LSR+
Sbjct: 183 VGDSSDNVPGVKGIGDKTARQLLQEWGSLDRIYANLARVGSASVRDKLEKHREEALLSRR 242

Query: 246 LVMLRTDVPITIPLEHLILEDCNGP----RLISFLKALEFTKLIN 286
           LV  R DVP+   LE        GP    +LI   + LEF  L++
Sbjct: 243 LVSFREDVPVERKLEAF----APGPPLKSQLIGLFEELEFRSLLD 283


>gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
 gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
          Length = 850

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/495 (43%), Positives = 314/495 (63%), Gaps = 27/495 (5%)

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           ++R  ED+M+ SYVLDS RSS+++ ++   ++SY   ++   +K         D +V   
Sbjct: 379 NIRNCEDVMIASYVLDSTRSSYELETL---FISYLNTDLAAVKK---------DKKV--- 423

Query: 542 AIENSNVIL--QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
               ++VIL  +LW  L   + +     VY  +++P+I ++ +ME  G ++D+D L Q +
Sbjct: 424 ----TSVILLKRLWDELSSLIDLNSCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYT 479

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            EI   +L+LE+ IY ++GE FN++SPKQL  ILF KLK P   KTKTG + T A+ LE+
Sbjct: 480 KEIESKILNLEKQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTKTG-YSTDAEVLEE 538

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + I+  IL++R  +KI +TY   L   IN  + RVHT +    T TGRLAS +PN
Sbjct: 539 L-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPN 597

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP+K D G+ IR+ FI      LI ADYSQIELRILAHI++   L   F+N++DIH 
Sbjct: 598 LQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHS 657

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FGV+I+ V+P+MR  AK +NF I+YGIS + LA  ++I R EAA++I RYF R+
Sbjct: 658 QTAAEVFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERY 717

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY++    F R NGYV T+F RR +  +I S   + RN  ER A+N+PIQGSAADI
Sbjct: 718 PKVKEYLDNIVKFARDNGYVLTLFNRRRYVKDIKSANRNARNYAERIAMNSPIQGSAADI 777

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I+   ME A    + L+
Sbjct: 778 MKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVKREMENA----VALK 833

Query: 960 VPLKVNIKVSNNWQE 974
           VPL V +K   NW E
Sbjct: 834 VPLVVEVKEGLNWYE 848



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 158/291 (54%), Gaps = 12/291 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L + DG+S +YRAF+A P L+   + +P NAI GF N++ K L+    +    + AV FD
Sbjct: 3   LVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFINVILKYLEQENPD----YVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R   Y +YKANR  +P+ L  Q+P VR    A  IP IE +G+EADD+I +   
Sbjct: 58  KKGRQARKSEYEEYKANRKPMPDNLQVQIPYVREILYALNIPIIEFEGYEADDVIGSLVN 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180
           + +     + II+ DKD +QL+     +      +D   E+    E+V +K+G+   ++ 
Sbjct: 118 MFKNTDLDIVIITGDKDTLQLLDKNVVVKIVSTKFDKTTEDLYTAENVKEKYGVWANQVP 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N + IK    RE +    + A
Sbjct: 178 DYKALVGDQSDNIPGVKGIGAKSAQKLLEEYSSLEEIYQNLNNIK-GSIREKLEASKDIA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            LS++L  +  D+P+ I LE L   + N  RL   L  LEF  +I R+  +
Sbjct: 237 FLSKRLATIVCDLPLNIKLEDLRTREWNKKRLYEILLQLEFKSIIKRLGLS 287


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
          Length = 920

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/535 (40%), Positives = 330/535 (61%), Gaps = 12/535 (2%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504
            ++ ++  +  +ENE+ LK+G NIKYD  VL +YGI ++G   D M+  Y++      H+
Sbjct: 390 AEKFVNIFRPLYENENILKVGQNIKYDYEVLAQYGIDIKGKMFDTMIAHYLIQP-ELHHN 448

Query: 505 IASIAQKWLSYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           +  +A+  L Y      E++ ++ K    +  +S + + E+A E++++ LQL+ +L PKL
Sbjct: 449 MDYMAETLLGYKTVHIDELIGAKGKHQKNMRDLSPTDIYEYASEDADITLQLYKVLEPKL 508

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
                  ++ +++ P++ V++ ME+ G+ +D D L + S   +  +   E  IY+ + EK
Sbjct: 509 KEVNAEDLFWKIEMPLVRVLADMEMNGVCLDTDALAETSKIFTDRMNEYEALIYEQASEK 568

Query: 621 FNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           FN+SSPKQ+GDILF K++      KTKTGQ+ T+ + L+ +     PI+ NIL++R + K
Sbjct: 569 FNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLEAS-APIVGNILKYRGIKK 627

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           + STY D+LP  INKRT  +HT ++ A T TGRL+S +PNLQNIP++TD G++IR+ FI 
Sbjct: 628 LLSTYIDALPKLINKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIP 687

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            P     SADYSQIELRI+AH+++   + + F +  DIHR  AA+I+ V +E+VS   R+
Sbjct: 688 EPKCLFFSADYSQIELRIMAHLSQDENMMEAFRSGHDIHRATAAKIWHVPMEEVSDAQRK 747

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK  NF IIYGI+ + LA ++ IP  EA + I+ YF  FP +  ++EK K   R+ GY 
Sbjct: 748 KAKQANFGIIYGITTYGLAQRMGIPNGEAKELIEGYFKTFPSVKAFMEKAKQTAREKGYA 807

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+F RR +  +INS   ++R   ER AINAPIQG+ ADI + AMI + +      + +K
Sbjct: 808 ETLFNRRRYLSDINSKNGTVRGFAERNAINAPIQGTEADIIKVAMIRIWERFRRENIRSK 867

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+LQ+HDEL F V  EE     +I++  M+ A  P   L VPL  +    NNW E
Sbjct: 868 MILQVHDELNFSVFPEEKEKVERIVIEEMQ-AAYP---LNVPLVADAGWGNNWLE 918



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/293 (36%), Positives = 162/293 (55%), Gaps = 25/293 (8%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + I+R++YA    P ++ K  GL  +AI GF N L +++    KE+  +H  V
Sbjct: 4   LFLIDAYALIFRSYYAFIKNPRINSK--GLNTSAIMGFFNTLNEVIT---KEN-PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRNE +P+YKA R   PE +   +P +R   +A  IP ++ +GFEADD+I T
Sbjct: 58  AFDI-GETFRNEAFPEYKAQRDATPEDIKAAVPYIREILEAMHIPTLQAEGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175
                  +G    +++ DKD  QL+     +        Y+ V E +I      +K+GIP
Sbjct: 117 LATRFGADGIDTFMLTPDKDYGQLIGDHIYMYRPQHGGGYEVVGEPQIQ-----EKYGIP 171

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
              ++V L AL GDS DN PG PG+G KTAA L+ E+G+++ +L     IK  K RE + 
Sbjct: 172 SAAQVVDLLALMGDSADNFPGCPGVGEKTAAKLINEFGSIDEMLARTGEIK-GKLREKVE 230

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +    ++S+ L  +R DVPI + L+ L LE+ N  +L      LEF  L+N+
Sbjct: 231 SHIHDIKMSKFLATIRRDVPIEVSLDELKLEEPNEEKLREIFTELEFRTLLNK 283


>gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002]
          Length = 850

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/511 (43%), Positives = 319/511 (62%), Gaps = 28/511 (5%)

Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           I YD K + H+  +    +++  ED+M+ SYVLDS RSS+++ ++   ++SY   EI   
Sbjct: 361 IVYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRSSYELETL---FVSYLNTEIEAV 417

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           RK              +  I +  ++ +LW  L   + +     +YE +++P+I V+ +M
Sbjct: 418 RK--------------DKKIVSVVLLKRLWDELLRLIDLNSCQFLYENIERPLIPVLYEM 463

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TG ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   
Sbjct: 464 EKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +
Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
               T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++
Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISE 641

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I
Sbjct: 642 DERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKI 701

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EAA++I RYF R+P + EYI+ T  F R NG+V T+F R+ +  +I S   ++R   
Sbjct: 702 SRKEAAEFINRYFERYPKVKEYIDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYA 761

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I
Sbjct: 762 ERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEI 821

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A    + L+VPL V +K   NW E
Sbjct: 822 VKREMENA----VTLKVPLVVEVKEGLNWYE 848



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 163/291 (56%), Gaps = 12/291 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L + DG+S +YRAF+A P L+  ++ +P NAI GF N++ K L+  + +    + AV FD
Sbjct: 3   LVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R   Y +YKANR  +P+ L  Q+P VR    AF IP IE +G+EADD+I +   
Sbjct: 58  KKGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVN 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180
             +  G  + II+ D+D +QL+     +      +D   E+   IE++ +K+G+   ++ 
Sbjct: 118 QFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQVP 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + A
Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKSSI-REKLEAGKDMA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  +
Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287


>gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL]
 gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL]
          Length = 850

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/493 (43%), Positives = 311/493 (63%), Gaps = 23/493 (4%)

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           ++R  ED+M+ SYVLDS RSS+++ ++   +L+   + + K +K +  I           
Sbjct: 379 NIRNCEDVMIASYVLDSTRSSYELETLFMSYLNTDLEAVKKDKKVTSVI----------- 427

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
                 ++ +LW  L   + +     VY  +++P+I ++ +ME  G ++D+D L Q + E
Sbjct: 428 ------LLERLWDELSSLIDLNSCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKE 481

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I   +L+LE+ IY ++GE FN++SPKQL  ILF KLK P   KTKTG + T A+ LE++ 
Sbjct: 482 IESKILNLEKQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTKTG-YSTDAEVLEEL- 539

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              + I+  IL++R  +KI +TY   L   IN  + RVHT +    T TGRLAS +PNLQ
Sbjct: 540 FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQ 599

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP+K D G+ IR+ FI      LI ADYSQIELRILAHI++   L   F+N++DIH   
Sbjct: 600 NIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQT 659

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAEIFGV+I+ V+P+MR  AK +NF I+YGIS + LA  ++I R EAA++I RYF R+P 
Sbjct: 660 AAEIFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPK 719

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + EY++    F R+NGYV T+F R+ +  +INS   + R+  ER A+N+PIQGSAADI +
Sbjct: 720 VKEYLDNIVKFARENGYVLTLFNRKRYIKDINSTNRNTRSYAERIAMNSPIQGSAADIMK 779

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V++ L+++ L  K++LQ+HDEL+ E P EE     +I+   ME A    + L+VP
Sbjct: 780 LAMIKVYQKLKENNLKAKIILQVHDELLIEAPYEEKDIVKRIVKTEMENA----VALKVP 835

Query: 962 LKVNIKVSNNWQE 974
           L V +K   NW E
Sbjct: 836 LVVEVKEGLNWYE 848



 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 159/291 (54%), Gaps = 12/291 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L + DG+S +YRAF+A P L+   + +P NAI GF N++ K L+    +    + AV FD
Sbjct: 3   LVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFINVILKYLEQESPD----YVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R   Y +YKANR  +P+ L  Q+P VR    A  IP IE +G+EADD+I +   
Sbjct: 58  KKGRQARKSEYEEYKANRKPMPDNLQVQIPYVREILYALNIPIIEFEGYEADDVIGSLVN 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180
           + +     + II+ DKD +QL+     +      +D   E+    E+V +K+G+   ++ 
Sbjct: 118 MFKNIDLDIVIITGDKDTLQLLDKNVVVKIVSTKFDKTTEDLYTAENVKEKYGVWANQVP 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + A
Sbjct: 178 DYKALVGDQSDNIPGVKGIGAKSAQKLLKEYSSLEEIYQNLDKIK-GSIREKLETGKDMA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            LS++L  +  D+P+ + LE L  ++ N  +L   L  LEF  +I R+  +
Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKEKLYEILVQLEFKSIIKRLGLS 287


>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
          Length = 940

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/535 (41%), Positives = 336/535 (62%), Gaps = 15/535 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506
           ++L++     +N    KIG NIK+D LV+ +YGI + G   D M+  Y+L+     H + 
Sbjct: 411 KVLAHFSPALQNPKSFKIGQNIKFDILVVRKYGIRIAGPLFDTMIAHYLLNP-ELRHGMD 469

Query: 507 SIAQKWLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            +A+ +L Y   R E L   K RK  + +  +   QV E+A E++++ L+L     P L 
Sbjct: 470 YLAETYLKYKTVRIEELIGPKGRKQ-LCMRDVPIPQVAEYAAEDADITLKLKNYFAPCLD 528

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            E L  ++  ++ P+I V+++ME TG+ +D   LKQ S E++  L  LE+ IY+L+G KF
Sbjct: 529 KEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIYELAGIKF 588

Query: 622 NLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           N++S +Q+G++LF  LK    AK TKTG + T+ + LE++    +P+++ +LE+R L K+
Sbjct: 589 NINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSEEILEKMRS-KHPVVEKLLEYRGLKKL 647

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            STY D+LP  IN  T ++HT Y+ A T TGRL+S  PNLQNIP++ +LG++IR+AF + 
Sbjct: 648 LSTYIDALPELINPETGKIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGREIRKAFTAE 707

Query: 741 PTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
               +  SADYSQIELRI+AH+++   + + F +  DIH   AA+I+G+ +E+V+  MRR
Sbjct: 708 NEDCIFFSADYSQIELRIMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRR 767

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKT NF IIYGIS F LA +L IPR+E+ + I+ YF  +P I  Y++++    ++ GYV
Sbjct: 768 KAKTANFGIIYGISVFGLAERLNIPRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYV 827

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ETI+ R+    +INS  + +R   ER AINAPIQGSAADI + AM+ +    E   L +K
Sbjct: 828 ETIYKRKRFLPDINSHNAIVRGYAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSK 887

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+LQ+HDEL F V ++E+    QI++  ME A    I L+VPL  +     NW E
Sbjct: 888 MILQVHDELNFNVYKDEMEKVKQIVLDEMENA----IQLQVPLIADCGEGVNWLE 938



 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/292 (40%), Positives = 162/292 (55%), Gaps = 20/292 (6%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYR++YA    P ++ K  G+  +AI GF N L  +L    K    +H AV
Sbjct: 3   LFLIDAYALIYRSYYAFIKNPRINSK--GMNTSAIFGFINSLEDVL----KRENPTHIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE +   +P ++   +A+ IP +E+  +EADD+I T
Sbjct: 57  GFDPKGPTFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179
               AEKEGF V +++ DKD  QLVS    +Y        E + I  V+ K+G+   +++
Sbjct: 117 VAKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGDYEIMGIPEVLGKYGLTSVDQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEY 236
           + L  L GDS DNIPG PG+G KTA  LL E+G +EN+L N  ++K   QKK  EN    
Sbjct: 177 IDLLGLMGDSSDNIPGCPGVGEKTAQKLLAEFGTIENLLENTDKLKGSLQKKVTEN---- 232

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            E  R S+ L  ++TDVPI       I E  N  RL+     LEF   INR+
Sbjct: 233 TEQIRFSKFLATIKTDVPIQFDAAKCIREKVNEERLVEIYTELEFRTFINRM 284


>gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
 gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
          Length = 865

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/594 (36%), Positives = 340/594 (57%), Gaps = 32/594 (5%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           ++   IGSA    + + +      P+A+AI+   +  +  F ++ I  D ++  ++    
Sbjct: 301 RRYSVIGSAGE--LREWLAGAAGTPVAVAIT---KSTEGEFALDMIAAD-TIGLARKRGE 354

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR 500
              +T E++  LK + E+   +K+  ++K   L L R GI  RGF  D+M+  ++LD+  
Sbjct: 355 ACAVTSELIVELKPWLEDAAVVKVACDVKSAVLQLARLGIEARGFGHDVMIYGFLLDADP 414

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
               + + A + L                     D ++   A +++++ L+L+  L P +
Sbjct: 415 GGCGLENQAHRRL---------------------DLKLGGAAEQHADITLELYEQLAPAI 453

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
               L  +Y+ ++ P+  V+++ME TGI+ID   LK++S  +   +  L   I+ L+G+ 
Sbjct: 454 DGRGLRKLYDEIELPLTRVLARMERTGIRIDGAELKRLSVLMESQISGLTAEIHALAGKP 513

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN+SSP+QLG +LF  L  P+  K   G+  +TA D+      ++ I++ +LE+RQL+K+
Sbjct: 514 FNISSPQQLGKVLFEDLNLPAPVKYGKGKTISTAADVLDELAAEHEIVRKVLEYRQLTKL 573

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           K TY D+LP  I+  T R+HT ++     TGRL+S  PNLQNIPI+T LG++IR AF+  
Sbjct: 574 KGTYVDALPALIDPATGRLHTSFNQTGAATGRLSSSNPNLQNIPIRTSLGREIRAAFVPR 633

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
              KL+ ADYSQIELR+LAH++    L Q F    DIH   AAE+ GV    V+P+ RR 
Sbjct: 634 DGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLMVTPEARRD 693

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +NF I+YGIS F LA QL I R+EA  YIK YF R+ G+  +IE+T   VR+ G  +
Sbjct: 694 AKAVNFGIVYGISAFGLAAQLGIGRAEAERYIKNYFARYVGVKRFIEETIAEVRKTGVTK 753

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T+FGR     EIN    + R   ER A+N+P+QG+AAD+ + AM+ +  +L        M
Sbjct: 754 TLFGRERPIPEINGRNPNARGFAERTAVNSPLQGTAADLIKLAMVRIDAALAAGGFQAAM 813

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQ+HDELVFE P EE+   S+++   ME AC     L+VPL V++   +NW++
Sbjct: 814 LLQVHDELVFECPPEELDEVSRMVKREMEGAC----ELKVPLVVDVGSGDNWRD 863



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/292 (37%), Positives = 166/292 (56%), Gaps = 9/292 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           LFL+D   FI+RA++A         R   G    A+  F NML KL     K+    + A
Sbjct: 10  LFLIDTFGFIFRAYHARARTGAPPMRTSTGFSTEAVYIFNNMLRKL----SKQHDPPYVA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            IF+    T R + + +YKANR + P  LL Q+P VR   +A  IP +E  GFEADD+I 
Sbjct: 66  AIFESGEATHRVQEFAEYKANRTETPPDLLDQIPFVRRVLEAMRIPILEYPGFEADDVIG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVC 181
           T T  AE EG  V I+S+DKD++QLV+    + +  K++K+ + E V    G+PP ++  
Sbjct: 126 TITRRAEAEGLDVVIVSSDKDMLQLVTEHVSMLNPAKDDKLYNPEEVKTFMGVPPVQVAD 185

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL GDS+DNIPG PGIG K A  +L+++G++E  L  A+ +++K  RE++    +  R
Sbjct: 186 LLALMGDSVDNIPGAPGIGDKGAKQILEKFGSIEAALERAAEVERKVYRESLQNNVDRIR 245

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +S++L  + TDVPI   L+ +  +  +   L +  K +EF  L+  +  + D
Sbjct: 246 MSKRLATISTDVPIEFTLDAVKAQAPDPGLLKAIYKEMEFHSLLKELGPSED 297


>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265]
 gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
          Length = 940

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/543 (40%), Positives = 327/543 (60%), Gaps = 12/543 (2%)

Query: 439 STGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           S  +  L++E  +  L+   EN    K G N+KYD LVL  YG+ +     D ML SY+L
Sbjct: 401 SFARTGLSREKTIELLRPLLENPAIAKTGQNLKYDLLVLKNYGLELSPISFDTMLASYLL 460

Query: 497 DSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
           +   ++H++  +A + L   +    E+  + K+ + ID +   ++ ++A +++++ L+L 
Sbjct: 461 NP-ETTHNLDDLAARHLKLRTTKYDELTGTGKTKLHIDDVEPRKLTDYACQDADIALRLT 519

Query: 554 LLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            +L+ +L  E  L H+ E L+ P+I V+  ME  GI ID   L   S  +   LL L+E 
Sbjct: 520 AILQKELAEEPNLRHIGETLEFPLISVLGAMESQGISIDTRHLAATSESVGTQLLQLKET 579

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
           I+  +GE FN+ SPKQL  ILF  L  P+   TKTG + T  + LE++    +P++ N+L
Sbjct: 580 IHSAAGESFNIDSPKQLSRILFEVLGLPTKKTTKTG-FSTNVEVLEEL-APLHPVVGNLL 637

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
           E+R L KIK+TY D+LP  +N RT RVHT ++   T TGRL+S  PNLQNIPI+T LG++
Sbjct: 638 EYRSLQKIKTTYIDALPKMLNPRTGRVHTSFNQHITATGRLSSSNPNLQNIPIRTPLGRE 697

Query: 733 IRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           IR+AFI + P   L+SADYSQIELRI A I+    L + F N  DIH   A  IF  +  
Sbjct: 698 IRKAFIPTDPRNLLLSADYSQIELRIAAEISGDGKLIEAFRNREDIHSATARVIF--DTP 755

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            ++P MRR AK +NF ++YGI PF L+ +L IPRSEAAD I  Y  ++PG+ E ++  K 
Sbjct: 756 DITPDMRRKAKEVNFGVLYGIQPFGLSKRLNIPRSEAADIISTYTAKYPGLFEALDTIKT 815

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
             R+ G+V T+ GRR +   ++S   +++   ERAA+N PIQG+AADI + AMI   K +
Sbjct: 816 TGREKGFVTTLLGRRRYLPNLSSRNGNLQKAAERAAMNTPIQGTAADIIKCAMILCSKRM 875

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           ++H + + MLLQ+HDELVFE   EE    S ++  +M +A        VP++V+     N
Sbjct: 876 KEHDMQSSMLLQVHDELVFETTPEEQENLSALVEEAMIEAAGMCGMKTVPVEVDCGTGKN 935

Query: 972 WQE 974
           W E
Sbjct: 936 WLE 938



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/273 (35%), Positives = 144/273 (52%), Gaps = 22/273 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           LFL+DG + +YRA YA   L R       G P  A+ GF + L K+ +         + A
Sbjct: 29  LFLIDGMALLYRAHYA---LQRSGMQNRSGQPTGALFGFLSTLLKIFETYHP----GYLA 81

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDII 121
             FD    TFR+++Y  YKANR   PE +L Q+ PL +L  +A GIP ++  G+EADD+I
Sbjct: 82  AAFDSREKTFRHDLYDQYKANRQAPPEDMLAQIEPLFKL-LEALGIPILKTPGYEADDLI 140

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPE 177
            +   + E +   + I++ DKDL QLV     +    K +     +  E + +++G+PP 
Sbjct: 141 GSAARLFEDQ-CNIFIVTPDKDLAQLVHGGVSMLRPTKNDSELQLLTPEGIAEQFGVPPA 199

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +      LTGD+ DNIPG  GIG KTAA LL  +G+LEN+      I  K  R ++ E+ 
Sbjct: 200 QFTQFLTLTGDTSDNIPGAKGIGPKTAATLLGRFGSLENVYEKLEEIAPKT-RASLEEFR 258

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
               L   LV +RTD+ + + L+ L    C  P
Sbjct: 259 SRLPLITDLVTIRTDLELPVTLQELA---CTTP 288


>gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus]
          Length = 878

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/501 (41%), Positives = 322/501 (64%), Gaps = 16/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKIS 534
           GI +RG E D+++ SY+L+  +S+ D+AS+A+  ++++    E +  K  K ++P +K  
Sbjct: 386 GIELRGIEFDLLIASYLLNPSQSTEDVASVAKTKQYMAVQSDEAVYGKGAKQTVPEEK-- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + EH +  +  I  L       L   +   ++  L+ P+  ++++ME TG+++D + 
Sbjct: 444 --ALAEHLVRKAAAIRALEKEFIHDLQENEQYALFTDLELPLSSILAEMEFTGVKVDVER 501

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK++  E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + T+A
Sbjct: 502 LKEMGEELTEQLRAVEQEIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YSTSA 560

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    + I++ IL +RQL K++STY + L   ++  T +VHT ++ A T TGRL+
Sbjct: 561 DVLEKL-APQHEIVEKILHYRQLGKLQSTYIEGLLKVVHCDTHKVHTIFNQALTQTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIPI+ + G+KIR+AF+ S P   + SADYSQIELR+LAHIA    L   F +
Sbjct: 620 STEPNLQNIPIRLEEGRKIRQAFVPSKPDWVIFSADYSQIELRVLAHIANDENLIDAFRH 679

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IF V  ++V+P MRR AK +NF I+YGIS + L+  L IPR EAA++I+
Sbjct: 680 DLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNIPRKEAAEFIR 739

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+ +Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 740 RYFEIFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQ 799

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   L+  KL  +MLLQ+HDEL+ E P+EE+    QI+   ME A  
Sbjct: 800 GSAADIIKKAMIDLADRLKQEKLQARMLLQVHDELILEAPKEEVKRLQQIVPEVMENA-- 857

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             I L+VPL ++ +    W +
Sbjct: 858 --IQLKVPLLIDFRFGPTWDD 876



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/294 (39%), Positives = 174/294 (59%), Gaps = 11/294 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L  + G S  YRAF+A PLL     G+  NA+ GF  ML K+L+  +     +H
Sbjct: 1   MRVKKKLVFIYGKSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLMKILEEEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + +YK  R + P  L  Q PL+R   QA+ I + E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHKTFTEYKGGRQQTPPELSEQFPLLRELLQAYQICSYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIP 175
           I T +  AEKEGF V IIS D+DL QL S    + D  K+   D+E      V +K+G+ 
Sbjct: 116 IGTLSAKAEKEGFEVKIISGDRDLTQLASDHVTV-DITKKGITDVESYTPETVREKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE+++ L+ L GD  DNIPG+PGIG KTA  LL+++G++ENIL +  +I   K +EN+ +
Sbjct: 175 PEQIIDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGSVENILASIEQINGNKLKENLEK 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           Y + A +S++L  +  D PI + LE +     +  ++I+  K L F  L+++VA
Sbjct: 235 YRDLALMSKQLATISRDAPIELSLEDIEYHGQDVDKVIALFKELGFNSLLDKVA 288


>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
 gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
          Length = 889

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/639 (36%), Positives = 359/639 (56%), Gaps = 30/639 (4%)

Query: 349 KLFLE-RLQKLSQ-YPINND----SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           K+F E   + LS+ YP+  D     YT +   +D++   + LE  G  +    T  +D  
Sbjct: 266 KIFSELEFRDLSKAYPVKTDLSKKEYTALTTEEDLEALAENLEKAGVFALDTETTGLDPM 325

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVH---TSQDSTGKNTLTKEILSYLKKFFEN 459
            +  + ++ S         ++ +  F     H    + D  G     ++ L  L     N
Sbjct: 326 QASLVGMSFS---------YEADRAFYAPLTHDYLGAPDQVG----VEKALEILGPVLSN 372

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY--- 515
               KIG NIKYD +VL R+G  ++G   D M+ SY+L+    SH +  IA + L +   
Sbjct: 373 PEIKKIGQNIKYDWIVLARHGADLQGVAFDTMVASYLLNPSHRSHGLDQIAMELLEHRMI 432

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
           + +E+      +I  +++   +   +A E+++V  Q++ LL+PKL   +LL +++ ++ P
Sbjct: 433 SYEEVCGKGAKAITFNQVPLEKAVPYACEDADVTFQIYGLLQPKLEKNQLLELFKTVEMP 492

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           ++ V+ +ME+ GI +D D L+ +S E    + S E+ IY L+GE+FN++SP+QLG ILF 
Sbjct: 493 LVRVLVKMEMEGITVDSDQLQALSKEFQGGMESAEKEIYQLAGEEFNIASPQQLGHILFE 552

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL  P   KTK     +T   +       + +   IL +R ++K+KSTY D+L + I+  
Sbjct: 553 KLGLPVQKKTKKKTGYSTDVKVLTTLASQHELPALILRYRSVAKLKSTYVDALQSLIHPE 612

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T RVHT ++   T TGRL+S  PNLQNIPI+T  G++IR AFI     ++  ADYSQIEL
Sbjct: 613 TGRVHTSFNQNVTATGRLSSSNPNLQNIPIRTPEGKRIREAFIPRKGWEMFCADYSQIEL 672

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RILAH+++   L ++F++  DIH+  A+E+F +  E V+ +MRR AK INF IIYG+  F
Sbjct: 673 RILAHLSQDEFLIELFKSGEDIHKRTASEVFELFPEFVTDEMRRQAKAINFGIIYGMGAF 732

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
           RL+ ++ + R  A  YI  YF  + G+ ++IE+T     + G  +T+ GR     +IN+ 
Sbjct: 733 RLSNEIGVSRKTAQRYIDNYFVTYKGVKKFIEETIALAHETGMTKTLLGRTRPLPDINAK 792

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
              +    ER A N PIQG+AAD+ + AMI V  +LE+  + TKMLL +HDELVFE P E
Sbjct: 793 NRVLMEAAERIATNTPIQGTAADLIKVAMIKVQNALEEQNMQTKMLLTVHDELVFESPPE 852

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EI  A Q++   M +      +L V LKVNI+   NW E
Sbjct: 853 EIFQA-QVLAEQMMEGVW---DLDVALKVNIESGKNWAE 887



 Score =  250 bits (639), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 123/278 (44%), Positives = 184/278 (66%), Gaps = 5/278 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++LVDGS++I+RAF+A   LS    GLP NAI GF NM+ KL+ + + E    + A++FD
Sbjct: 4   IYLVDGSAYIHRAFHAVRNLSNSK-GLPTNAIFGFTNMMLKLINDKKPE----YAAMVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E+Y DYKANRP + E L  Q+P ++  T+AF +P +E+QG+EADD+I T   
Sbjct: 59  AKGPTFRHEMYKDYKANRPPMDEALAVQIPYIKNVTEAFNMPMLEMQGYEADDLIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK+GF V +++ DKD  QLV+  + ++D +K+E   +E + +K G+PP+K++ + AL+
Sbjct: 119 KAEKQGFMVVMVTGDKDFNQLVTNKSVVWDPMKDETRTVESITEKQGLPPDKVIEIMALS 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPG+PGIG KTA  L+QE+G+LE +      I +KK++EN+  Y + A LS KL
Sbjct: 179 GDSSDNIPGVPGIGPKTAIALIQEFGSLEGVYEGVETITKKKQKENLQTYKDDAFLSHKL 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           V + TD P+    E L +++ +  +L      LEF  L
Sbjct: 239 VTIETDAPVEFDPEKLRIQEPDSQKLAKIFSELEFRDL 276


>gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
 gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
          Length = 888

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/546 (39%), Positives = 333/546 (60%), Gaps = 36/546 (6%)

Query: 439 STGKNTL-----TKEILSYLKKFFEN----EHFLKIGHNIKYDKLVLHRYGISMR--GFE 487
           S G+N L     + E  S+  K  +N        K  ++ K D  +LH YGI +   GF 
Sbjct: 361 SEGQNYLLPLNSSTETTSFALKLLQNICVDSKIKKCCYDTKADLWLLHYYGIEINQPGF- 419

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ML  Y+L+ G+S+  +   A   L    +E     ++ +P               ++ 
Sbjct: 420 DVMLADYLLNPGKSARSLPETALSHLDIVLQE---GSETYLP--------------ASAE 462

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           VI +L  +L+ KL++++  ++Y  ++ P++ V++ ME TG+ +D++ L+ +S E++K L 
Sbjct: 463 VISRLVDILQSKLLLQEQENLYYDIELPLLKVLASMERTGVSVDKEQLQLMSEELNKKLQ 522

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            L  +IY+ +GE FN++S KQLG ILF KLK  +G KTKTG + T    LE++  GD+P+
Sbjct: 523 VLTTDIYEHAGEIFNINSTKQLGSILFEKLKLKAGKKTKTG-YSTDVTVLEEL-AGDHPV 580

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           +  +LE+RQL+K+KSTY D L   IN +T ++HT +  A T TGRL+S EPNLQN+PI+ 
Sbjct: 581 VSLLLEYRQLAKLKSTYVDGLTGLINPQTGKLHTTFHQAVTATGRLSSSEPNLQNVPIRL 640

Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           D G+KIR+ F+   P   + SADYSQIELRILAHIA+   L   F    DIH   A+E+F
Sbjct: 641 DAGRKIRKFFVPCKPDNFIFSADYSQIELRILAHIAQDNNLMDAFAKKQDIHTRTASEVF 700

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV +++V+P+MR  AK +NF I+YGIS F LA  +++ R EA  YI  YF+R+ G+  YI
Sbjct: 701 GVAMDEVTPEMRGRAKAVNFGIVYGISDFGLAKDIKVTRKEAGRYINNYFNRYSGVKAYI 760

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           ++     R+ GYV TI  RR +  ++ S    +R+  ER A+N PIQGSA+DI + AM+ 
Sbjct: 761 DRVIREAREKGYVTTILNRRRYLPDLFSSNRVVRSFGERTAMNTPIQGSASDIIKLAMVL 820

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           +++ +   KL++ M+LQ+HDEL+F+V   E+     ++ + ME A    + L VPL V++
Sbjct: 821 IYREMRKRKLSSTMILQVHDELIFDVVASEVEEMQNLVKYYMENA----VELSVPLVVDM 876

Query: 967 KVSNNW 972
           K+  NW
Sbjct: 877 KIGPNW 882



 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/277 (42%), Positives = 169/277 (61%), Gaps = 12/277 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K N + ++DG+S I+RAF+A PLLS   DGLP NA+ GF NML K+L + + + +     
Sbjct: 10  KNNTILVIDGNSLIHRAFHAIPLLSTA-DGLPTNAVYGFTNMLLKILNDIQPKWVT---- 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRN+ Y +YKA+R   PE L PQ  LV+    A  I  +E +G+EADD+I 
Sbjct: 65  VAFDKSKTTFRNQEYSEYKAHRKATPEELRPQFSLVKDVLNALSIKWLEAEGYEADDLIG 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE+E   V I+S DKD++QLVS  T    T K     E+ + E+V +K+G+ P +
Sbjct: 125 TIVKKAEEEDADVVILSGDKDILQLVSDKTRAILTKKGITEIEEYNAENVYRKFGVHPNQ 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YA 237
           +   + LTGD  DNIPG+PGIG KTA  LLQ++ ++ENIL N  +I  + R   ++E  +
Sbjct: 185 ITDYKGLTGDPSDNIPGVPGIGPKTATKLLQDFDSVENILANLDKITSRAR--TLMENNS 242

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274
           E A LS++L  + T+VP+ I LE  I  + N   L +
Sbjct: 243 EQALLSKRLATIITNVPVQITLEQCIRTEPNEAELFN 279


>gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 850

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/511 (42%), Positives = 319/511 (62%), Gaps = 28/511 (5%)

Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           I YD K + H+  +    +++  ED+M+ SYVLDS RSS+++ ++   ++SY   +I   
Sbjct: 361 IVYDLKNIFHQLNLEDTDNIKNCEDVMIASYVLDSTRSSYELETL---FVSYLNTDIEAV 417

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           RK              +  I +  ++ +LW  L   + +     +YE +++P+I V+ +M
Sbjct: 418 RK--------------DKKIVSVVLLKRLWDELLRLIDLNSCKFLYENIERPLIPVLYEM 463

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TG ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   
Sbjct: 464 EKTGFKVDRDALLQYTKEIESKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +
Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
               T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++
Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISE 641

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I
Sbjct: 642 DERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIVYGISDYGLARDVKI 701

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EAA++I +YF R+P + EY++ T  F R NG+V T+F R+ +  +I S   ++R   
Sbjct: 702 SRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYVKDIKSTNRNLRGYA 761

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I
Sbjct: 762 ERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRI 821

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A    + L+VPL V +K   NW E
Sbjct: 822 VKREMENA----VALKVPLVVEVKEGLNWYE 848



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/433 (30%), Positives = 220/433 (50%), Gaps = 38/433 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L + DG+S +YRAF+A P L+  ++ +P NAI GF N++ K L+  + +    + AV FD
Sbjct: 3   LVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R   Y +YKANR  +P+ L  Q+P VR    AF IP +E +G+EADD+I +   
Sbjct: 58  KRGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYAFNIPIVEFEGYEADDVIGSLVN 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180
             +  G  + II+ D+D +QL+     +      +D   E+   IE++ +K+G+   ++ 
Sbjct: 118 QFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQVP 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + A
Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIK-GSIREKLEAGKDMA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  +   +    E
Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS---EVVQFE 293

Query: 301 PVV--LDINTTENKGIAIETEIDRDTTIKTSQFSSL--SDQTSKINSEQTPQKLFLERLQ 356
            V    DI   E K      E++  + I+T +   +   D+      +Q    +F+ R  
Sbjct: 294 FVQQRTDIPDVEQK------ELESISQIRTKEIPLMFVPDEQCFYLYDQESNTVFVTRDG 347

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L +  + +D+   + + K+I   +             + DT +  + + + IA   LD 
Sbjct: 348 HLVEEILKSDTVKIVYDLKNIFHQLN------------LEDTDNIKNCEDVMIASYVLDS 395

Query: 417 KDDTSFKVETIFI 429
              +S+++ET+F+
Sbjct: 396 T-RSSYELETLFV 407


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 360/611 (58%), Gaps = 41/611 (6%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +  I +  +I + +  L+ + S  FK    +   +  K   + +++    D+ +  ++T
Sbjct: 299 GFEVITDLTEIDRVLSMLDEVESFGFKFNFASTKLYQQKVEGLTVAS----DEEACYIDT 354

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
             +DL+               E++  L+ +FE+    K+  N K + + L   G+ ++G 
Sbjct: 355 SDLDLA---------------ELIDKLQPYFEDYELNKLSLNTKENLIYLKEQGVEVKGI 399

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D +L  Y+L       D+ SI    L   + E+ K+   +            E  ++ 
Sbjct: 400 SFDPLLADYLLRPSAKEQDLESILTDQL---QMELEKTESEA------------ETEVQQ 444

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             ++ +L   L  KL  + L+ ++  ++ P+I +++QME+ GI +DQD+++++S ++ + 
Sbjct: 445 VRILFKLQDKLTDKLADKGLMELFIDVELPLIPILAQMELNGIAVDQDMIQELSNKLEEK 504

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L SL    Y+L+GE+FNL+SPKQLG+ILF KL  P   +TKTG + T+A  LE++    +
Sbjct: 505 LDSLRSRAYELAGEEFNLNSPKQLGEILFEKLGLPVIKRTKTG-YSTSASVLEKLE-DKH 562

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            I+  ILE+R+  K+KSTY D LP+ IN +T+R+HT ++   T TGRL+S EPNLQNIPI
Sbjct: 563 EIVPLILEYRKYQKLKSTYVDPLPDLINPKTERIHTSFNQLVTATGRLSSTEPNLQNIPI 622

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +T+ G++IR+ F++   K+L++ DYSQIELR+LAHI++   L   +    DIH   AAE+
Sbjct: 623 RTEEGRRIRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHTKTAAEV 682

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FG+   +VS Q RR AK INF I YGISP+ LA  + + + EA DYI +Y +R+P + EY
Sbjct: 683 FGLEASEVSYQQRRRAKAINFGIAYGISPWGLAKDINVSKQEAEDYINQYLNRYPKVKEY 742

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++      ++ GYV TI  RR +  EINS     R+  ER AIN PIQGSAADI + AM+
Sbjct: 743 MDHQIKQAKEEGYVTTILNRRRYLPEINSSNYHRRSFGERMAINTPIQGSAADIMKLAML 802

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
              + L++ +L TK+LLQ+HDEL+FEVP EE+    Q+I   ME      I L VPLKV+
Sbjct: 803 ESARVLDERELDTKILLQVHDELIFEVPPEELEEVQQVIKAEMEDV----IELDVPLKVD 858

Query: 966 IKVSNNWQEEN 976
           +KV +NW++ N
Sbjct: 859 LKVGSNWRDMN 869



 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/326 (38%), Positives = 190/326 (58%), Gaps = 19/326 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  LFL+DGSS ++RAFYA P   +  DG   N + GF  ML +L++    +S+A  
Sbjct: 1   MEDKKELFLLDGSSLLHRAFYALPESLQTSDGEYTNGVFGFTKMLLRLIEEEDPDSLA-- 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E Y +YKANR + P+ L PQ  L++   +AF IP +E++G+EADDI
Sbjct: 59  --VAFDLAGPTFRHEEYEEYKANRKETPDKLKPQFGLMKEVLEAFRIPVVELEGYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EG+ VTI++ D+D +QLV+  T +  T +        D+E V +++ + P
Sbjct: 117 IGTLARQAEEEGYQVTIVTGDRDALQLVTEQTKIRYTKRGITNIVDYDLEKVEEEYELEP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            K++  + L GD  DNIPG+ GIG KT+  LL ++G+LE +L N  ++  KKR++ + E 
Sbjct: 177 RKLIDKKGLMGDKSDNIPGVDGIGKKTSTKLLHQFGSLEEVLDNIDQVSGKKRKQTLKEQ 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+ AR+S+KL  ++ DVPI   L+   LE+ +  +LI+ L  LEF  L+         + 
Sbjct: 237 ADRARMSKKLATIKLDVPIECDLDEFKLEEPDQEKLINILSRLEFNSLLKEFGGHETLNL 296

Query: 297 ANIEPVVLDINTTENKGIAIETEIDR 322
                V+ D+           TEIDR
Sbjct: 297 TGGFEVITDL-----------TEIDR 311


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/619 (35%), Positives = 352/619 (56%), Gaps = 18/619 (2%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q  ++   YT ++  ++++    +LE     +F   T  +D   ++ + I+++ L+  + 
Sbjct: 286 QTDLSGKRYTGVMTQQELESLAGRLEKASCFAFDTETTALDPMKARLVGISLA-LEPDEA 344

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V   +    V   +D+         +L  L   FEN    KIG N+KYD  VL R 
Sbjct: 345 FYIPVGHAYEGAPVQLDRDA---------VLRILAPAFENTKITKIGQNVKYDWTVLSRC 395

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535
           G  + G   D M+ +Y+L+  R S+ +  +A  +L++   + +++  + K++     +  
Sbjct: 396 GFKIDGPVFDTMIAAYLLNPTRRSYGLDRLAADYLNHRMISYQDVTGTGKNAKCFSAVPL 455

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +   +A E++++   L  LL  +L    L  + E ++ P++ V+  ME+ G+ +D++ L
Sbjct: 456 EEAIPYAAEDADITFSLHRLLEKELKQGGLFELLETIEMPLVPVLMHMEMAGVAVDREAL 515

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             +S E+   L  LE  IY L+GE FN++SP+QLG ILF KL  P+  KTK     +T  
Sbjct: 516 AALSKELEGQLEKLEGEIYGLAGETFNINSPQQLGVILFEKLGLPTQKKTKKKTGYSTDA 575

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+       + +   +L  R L+K+KSTYAD+L   I   T R+HT ++  +T TGRL+S
Sbjct: 576 DVLTTLADHHELPALLLRHRTLAKLKSTYADALAELILPETGRIHTSFNQTATATGRLSS 635

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G++IR+AF+  P    +SADYSQ+ELRILAH ++   L + FEN  
Sbjct: 636 TDPNLQNIPIRTEEGRQIRKAFVPRPGWTFVSADYSQVELRILAHYSQDPILIEAFENDE 695

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+F +  E ++  +RR AK INF I+YGISPF LA  L I +  A +Y+  Y
Sbjct: 696 DIHTRTASEVFQLFPEMITEDVRRQAKAINFGIVYGISPFGLARDLGISQKMAKNYMDSY 755

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+  + E+++K     R+ G   T+FGR  +  +I+SP  +++   ERAAIN PIQG+
Sbjct: 756 FSRYSRVKEFMDKAIADARETGQTRTMFGRIRYLPDIDSPNRTLQGYAERAAINTPIQGT 815

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI+  K+L   KL + MLL +HDE+V E P +E+ T S ++   ME  C   
Sbjct: 816 AADIMKLAMIATEKALAKEKLVSVMLLSVHDEIVLECPPDEVKTVSALVADIMENVC--- 872

Query: 956 INLRVPLKVNIKVSNNWQE 974
            +L V LKVN+   +NW +
Sbjct: 873 -DLAVRLKVNVAQGSNWAD 890



 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/278 (41%), Positives = 171/278 (61%), Gaps = 5/278 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+DG+++I+R ++A   LS    GLP NA   F  ML KL+    KE  + +  V FD
Sbjct: 7   IYLIDGTAYIHRGYHAVRNLSNSK-GLPTNAAFSFTRMLMKLM----KEKESEYAVVFFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI  +YKANRP + E +  Q+P +R   + F +P +E QG+EADD+I T   
Sbjct: 62  AKGPTFRHEIDREYKANRPPMAEDMAVQIPYIRKIVEGFNLPIVEQQGYEADDMIGTLAV 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEKEGF   I+S DKD  Q+V+    ++D +KE  ID   V KK+GI P +++   AL+
Sbjct: 122 KAEKEGFDTVIVSGDKDFAQMVTDHVTIWDPMKEIVIDRAAVEKKFGIQPAQVIDAMALS 181

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNI G+PGIG KTA  L+QE+G+L+N+      I +KK++EN+L + + A L+RKL
Sbjct: 182 GDTSDNIKGVPGIGEKTALALIQEFGSLDNLYDRVETITKKKQKENLLAHRDDAYLARKL 241

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           V + T+ P+   LE   ++  +   L +    LEFT L
Sbjct: 242 VTIDTNAPVAWDLEAFTVKAPDNAALSALFGELEFTGL 279


>gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1]
 gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1]
          Length = 875

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/528 (40%), Positives = 326/528 (61%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            KK+  +E   K  ++ K   + L R G+ + G E D++++SY+L+   S+ D A +A+K
Sbjct: 356 FKKWAADEKMKKSVYDAKRSIVALRRQGVELTGVEFDLLIVSYILNPAESADDFAGVAKK 415

Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
                +        K  K  +P     + ++ EH    +NV+ +L       L       
Sbjct: 416 HGASVIESDEAVYGKGAKRKVP----EEEKLAEHLARKANVVYELKSTCEEALKENDQYQ 471

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  +++ ME TG+ +D D LK++ +E+++ L  +E+ IY+L+GE+FN++SPK
Sbjct: 472 LFTDLELPLAIILADMEYTGVGVDVDRLKEMKSELAERLDEMEKKIYELAGEEFNINSPK 531

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL+ P   KTKTG + T+A  LE++    + II +IL +RQL K++STY + 
Sbjct: 532 QLGVILFEKLELPVIKKTKTG-YSTSADVLEKLQS-KHEIIDHILHYRQLGKLQSTYIEG 589

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   I++ + +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AFI  P++K   
Sbjct: 590 LLKVIHEDSNKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFI--PSEKNWL 647

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L   F   +DIH   A ++F V+ + V+  MRRHAK +
Sbjct: 648 MFAADYSQIELRVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHAKAV 707

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS F L+  L I R EA ++I+RY   +PG+ EY++   +  +QNG+V+T+  
Sbjct: 708 NFGIVYGISDFGLSQSLGITRKEAGEFIQRYLDSYPGVQEYMDDIISEAKQNGFVKTLLQ 767

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE   L T++LLQ+
Sbjct: 768 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMAARLEKENLQTRLLLQV 827

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE PE+EI    +I+   ME A    + L VPLKV+      W
Sbjct: 828 HDELIFEAPEDEIERLKEIVPEVMENA----VELEVPLKVDYSYGPTW 871



 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 114/293 (38%), Positives = 174/293 (59%), Gaps = 9/293 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML K++ +       +H  V FD
Sbjct: 5   LVLIDGNSIAYRAFFALPLLNNDK-GVHTNAVYGFTTMLQKIMTDEE----PTHILVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + +YK  R K P  L  Q P +R    A+ IP  E++ +EADDII T + 
Sbjct: 60  AGKTTFRHKTFGEYKGGRQKTPPELSEQFPYIRELLDAYQIPRYELENYEADDIIGTLSL 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AEK+G+ V IIS DKDL QL S TT +  T K     E    EH+++KW I P++++ +
Sbjct: 120 QAEKDGYEVKIISGDKDLTQLSSETTTVGITRKGITDIEVYTPEHIMEKWEITPDRIIDM 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GDS DNIPG+PG+G KTA  LL+++G +E +L +   +  KK +E + E+ + A +
Sbjct: 180 KGLMGDSSDNIPGVPGVGEKTAIKLLKQFGTIEKLLESIDEVSGKKLKEKLEEHKDQAVM 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           S++L  +  + PI + +E L  E  +  +L +F K L F+ L+ ++  T + D
Sbjct: 240 SKELATILREAPIEVTVEELNYEGSDDKKLKAFFKELGFSSLLEKMGETVEED 292


>gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23]
 gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23]
          Length = 875

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/589 (40%), Positives = 344/589 (58%), Gaps = 24/589 (4%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           SF+I+T+  +       A+ +   +    TS      FI L+VH+SQ +      T E  
Sbjct: 300 SFEIVTELKEKHFGGKTALYVELENDNYHTSN-----FIGLTVHSSQGTYFFTKETAENS 354

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
              +++ E+E   K+ ++ K   + ++R G+++ G   DIML SY+L+   S  D  S+A
Sbjct: 355 EAFREWVESEQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 413

Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +   YT  E       K  K S P + I  S +   A+     I  L   L   L   +
Sbjct: 414 VRH-DYTEVETDEAVYGKGAKRSTPEESIVASHLARKAV----AIADLEKRLVADLEENE 468

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L + E L+ P+  V+++ME+ G+ +D + L+ +  E++  L +LEE+I+ L+GE FN++
Sbjct: 469 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEAFNIN 528

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL  P+  KTKTG + T A  LE +  G + II  IL +RQL KI+STY
Sbjct: 529 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 586

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743
            + L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P  
Sbjct: 587 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 646

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V   MRR AK 
Sbjct: 647 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++ GYVETI 
Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L   KL  K+LLQ
Sbjct: 767 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W
Sbjct: 827 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 871



 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 169/309 (54%), Gaps = 10/309 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + PE+++
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D PI   +E    +     ++I  LK + FT L+  +      +A  +
Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEEAKEL 296

Query: 300 EPVVLDINT 308
           + +  +I T
Sbjct: 297 KELSFEIVT 305


>gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 885

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/619 (38%), Positives = 363/619 (58%), Gaps = 39/619 (6%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D++ + V  KD+++  + L+   S +FK ITD       KPI +A+           
Sbjct: 297 ISQDNF-EFVEIKDLKEIEKDLKDKKSLAFKFITDGKIYEDVKPIYLAVKV--------- 346

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                         +DS  K    +EI   +LKK  E+E   K+G+++K D ++L   GI
Sbjct: 347 --------------KDSEVKFISYEEIDFDFLKKIMEDEKVEKLGYSLKEDIIILMDLGI 392

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEIL--KSRKSSIPIDKISDS 536
            ++ +  D+ +  Y+L+S +S +DI  I+  +    Y   E L  K  K     D   D 
Sbjct: 393 DIKNYSHDVEIAEYLLNSTQSDYDINKISMAYFKNGYLDLEDLLGKGAKKKTYADLDKDD 452

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             +  A    N I +L  L + K+  E++  +Y+ ++ P+++V++ ME  GI  D+ +L 
Sbjct: 453 LFKYFAF-VLNTIYRLEDLQKEKIDEEEMTSLYQDMELPLVEVLASMEYVGINTDEAVLD 511

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++  +I + L +LEE IYD +GEKFN++SPKQLG ILF K+ FP   KTKTG + T+A  
Sbjct: 512 EIDKQIIEKLKTLEEEIYDEAGEKFNINSPKQLGVILFDKMDFPVIKKTKTG-YSTSADV 570

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++  G   II  IL++R+ SK+KSTY D L   INK+T+R+H+ +    T TGR++S 
Sbjct: 571 LEKLR-GKGEIIDKILDYRKFSKLKSTYIDGLKAVINKKTKRIHSRFMQTVTATGRISST 629

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPIKT+ G+ IR+AF++     L+ ADYSQIELR+LA ++    +   F++ LD
Sbjct: 630 DPNLQNIPIKTEEGRLIRKAFLASEGGVLVDADYSQIELRVLAALSDDKEMLDAFKHGLD 689

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  A+E+F V+ ++V  + R  AK +NF I+YGIS + L+  L IPR  A +YI  Y 
Sbjct: 690 IHRKTASEVFHVDYDEVDDRQRYEAKAVNFGIVYGISDYGLSQNLNIPRKAAKEYIDNYL 749

Query: 837 HRFPGIHEYI-EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
             F GI +Y+ E+ KN  +  GYVETIF RR +  E+N+   +IR+  ER A+N PIQGS
Sbjct: 750 GHFVGIKDYMAEEIKN-GKDKGYVETIFKRRRYIPELNAKNFNIRSFGERIALNTPIQGS 808

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V+  L+   L +K+++QIHDELV +  E+EI    +++   ME +    
Sbjct: 809 AADIIKIAMVKVYNELKKRNLKSKLIIQIHDELVVDTAEDEIEEVKELMKDLMENS---- 864

Query: 956 INLRVPLKVNIKVSNNWQE 974
           ++L V L V++    N  E
Sbjct: 865 VDLNVKLSVDMNTGANLYE 883



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 160/289 (55%), Gaps = 9/289 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N   ++DGSS  +RAFYA PLL  K  GL  NAI GF  M+    +N+ ++   +H AV
Sbjct: 2   DNKFLIIDGSSLFFRAFYALPLLKTKR-GLYTNAIYGFVMMV----ENAIEKVKPTHLAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+EIY DYK  R K P  L  Q PLVR       +  +E   +EADDI  T
Sbjct: 57  CFDMKGKTFRSEIYKDYKGTRQKTPNELEQQWPLVREILGHMNVKILESPVYEADDIAGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            + +  +EGF   +++ DKD  QLV+  T +  T K     + + +E + + +GI P + 
Sbjct: 117 LSKLGTEEGFENYLLTGDKDYFQLVNEKTKVLFTRKGITDMDIMTVEKIKEDYGIEPLEF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GDS DNIPGI GIG KT   L+ E+  +EN+  N   +  KK +E ++E   +
Sbjct: 177 IELKALMGDSSDNIPGIYGIGEKTGLKLIHEFHTIENLYDNIDDVSGKKLKEKLIEGKMS 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           A +S+KL  +  DVP+   L+     D +  +L    +  EF  +++R+
Sbjct: 237 AFMSKKLGTIVKDVPLEESLDDFKKVDYDYEKLSELYREFEFNSMLDRL 285


>gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
 gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I
 gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 319/511 (62%), Gaps = 28/511 (5%)

Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           I YD K + H+  +    +++  ED+M+ SYVLDS RSS+++ ++   ++SY   +I   
Sbjct: 361 IMYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRSSYELETL---FVSYLNTDIEAV 417

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           +K              +  I +  ++ +LW  L   + +     +YE +++P+I V+ +M
Sbjct: 418 KK--------------DKKIVSVVLLKRLWDELLRLIDLNSCQFLYENIERPLIPVLYEM 463

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TG ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   
Sbjct: 464 EKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +
Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
               T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++
Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISE 641

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I
Sbjct: 642 DERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKI 701

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EAA++I +YF R+P + EY++ T  F R NG+V T+F R+ +  +I S   ++R   
Sbjct: 702 SRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYA 761

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I
Sbjct: 762 ERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEI 821

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A    + L+VPL V +K   NW E
Sbjct: 822 VKREMENA----VALKVPLVVEVKEGLNWYE 848



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 163/291 (56%), Gaps = 12/291 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L + DG+S +YRAF+A P L+  ++ +P NAI GF N++ K L+  + +    + AV FD
Sbjct: 3   LVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R   Y +YKANR  +P+ L  Q+P VR    AF IP IE +G+EADD+I +   
Sbjct: 58  KRGREARKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVN 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180
             +  G  + II+ D+D +QL+     +      +D   E+   +E+V +K+G+   ++ 
Sbjct: 118 QFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDKTVEDLYTVENVKEKYGVWANQVP 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + A
Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKS-SIREKLEAGKDMA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  +
Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287


>gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99]
          Length = 885

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/589 (40%), Positives = 344/589 (58%), Gaps = 24/589 (4%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           SF+I+T+  +       A+ +   +    TS      FI L+VH+SQ +      T E  
Sbjct: 310 SFEIVTELKEKHFGGKTALYVELENDNYHTSN-----FIGLTVHSSQGTYFFTKETAENS 364

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
              +++ E+E   K+ ++ K   + ++R G+++ G   DIML SY+L+   S  D  S+A
Sbjct: 365 EAFREWVESEQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 423

Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +   YT  E       K  K S P + I  S +   A+     I  L   L   L   +
Sbjct: 424 VRH-DYTEVETDEAVYGKGAKRSTPEESIVASHLARKAV----AIADLEKRLVADLEENE 478

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L + E L+ P+  V+++ME+ G+ +D + L+ +  E++  L +LEE+I+ L+GE FN++
Sbjct: 479 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEAFNIN 538

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL  P+  KTKTG + T A  LE +  G + II  IL +RQL KI+STY
Sbjct: 539 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 596

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743
            + L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P  
Sbjct: 597 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 656

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V   MRR AK 
Sbjct: 657 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 716

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++ GYVETI 
Sbjct: 717 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 776

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L   KL  K+LLQ
Sbjct: 777 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 836

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W
Sbjct: 837 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 881



 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 169/309 (54%), Gaps = 10/309 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 12  NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 66

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 67  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 126

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + PE+++
Sbjct: 127 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 186

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E 
Sbjct: 187 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D PI   +E    +     ++I  LK + FT L+  +      +A  +
Sbjct: 247 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEEAKEL 306

Query: 300 EPVVLDINT 308
           + +  +I T
Sbjct: 307 KELSFEIVT 315


>gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
          Length = 850

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 318/511 (62%), Gaps = 28/511 (5%)

Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           I YD K + H+  +    +++  ED+M+ SYVLDS R S+++ ++   ++SY   +I   
Sbjct: 361 IVYDLKNIFHQLNLKDTDNIKNCEDVMIASYVLDSTRGSYELETL---FVSYLNTDIEAV 417

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           RK              +  I +  ++ +LW  L   + +     +YE +++P+I V+ +M
Sbjct: 418 RK--------------DKKIVSVVLLKRLWDELLRLIDLNSCKFLYENIERPLIPVLYEM 463

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TG ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   
Sbjct: 464 EKTGFKVDRDALLQYTKEIESKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +
Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
               T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++
Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISE 641

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I
Sbjct: 642 DERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIVYGISDYGLARDVKI 701

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EAA++I +YF R+P + EY++ T  F R NG+V T+F R+ +  +I S   ++R   
Sbjct: 702 SRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYVKDIKSTNRNLRGYA 761

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I
Sbjct: 762 ERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRI 821

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A    + L+VPL V +K   NW E
Sbjct: 822 VKREMENA----VALKVPLVVEVKEGLNWYE 848



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 163/291 (56%), Gaps = 12/291 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L + DG+S +YRAF+A P L+  ++ +P NAI GF N++ K L+  + +    + AV FD
Sbjct: 3   LVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R   Y +YKANR  +P+ L  Q+P VR    AF IP +E +G+EADD+I +   
Sbjct: 58  KRGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYAFNIPIVEFEGYEADDVIGSLVN 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180
             +  G  + II+ D+D +QL+     +      +D   E+   IE++ +K+G+   ++ 
Sbjct: 118 QFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQVP 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + A
Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIK-GSIREKLEAGKDMA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  +
Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287


>gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
 gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
          Length = 1041

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/672 (34%), Positives = 374/672 (55%), Gaps = 17/672 (2%)

Query: 308  TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
             TE + +    E  +D  ++ S F +   +       + P    +E      +  + + +
Sbjct: 373  ATEPRALPETQEEQQDGPMQLSLFDTPEPRAEVARKLRLPGPALVETSLFFEESNVQSPT 432

Query: 368  YTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
             T I+N+++ +   V+ L   G  +F   T + D   +  + ++ +            E 
Sbjct: 433  STMIINSEEGLDVLVKSLRDAGHFAFDTETTSEDQRKADLVGLSFAMAPG--------EA 484

Query: 427  IFIDLSVHTSQDST--GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             +I +   T+ D    G       +L  LK  FE+    K  HN KYD  V+ RYGI + 
Sbjct: 485  YYIPVGHTTTVDGQEPGTQLPLSHVLVQLKPIFEDASIGKYMHNAKYDIAVMLRYGIQVE 544

Query: 485  GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQE 540
            G   D ML +Y+++ GR    +   A + LS       E++ S    I + ++   +  +
Sbjct: 545  GLSFDSMLAAYLIEPGRRGLGLKEQAFQRLSILMTPITELIGSGSKIISMAQVPIRRAAD 604

Query: 541  HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            +A  ++++ L+L + L   L    LL ++ RL+ P+I V+ QME+ G+ +D + L +   
Sbjct: 605  YAGSDADMTLRLVVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYGVALDAEFLHEFGE 664

Query: 601  EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            ++++ L   E+ IYD  G  FN++SPKQLG++LF +LK P+G KTKTG +  +A  +E +
Sbjct: 665  QLNEQLRKAEQTIYDAVGHHFNVNSPKQLGEVLFVELKLPAGKKTKTG-YSVSADVIENL 723

Query: 661  NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              G +P I ++LE+RQLSK+KSTY D L   ++++T RV+T ++     +GRL+S  PNL
Sbjct: 724  R-GMHPAIDSLLEYRQLSKLKSTYIDGLQTLMDRQTGRVYTSFNQTIASSGRLSSSNPNL 782

Query: 721  QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
            QNIP++T+LG++IRRAFI+ P+  L++ADYSQIELRILA+I     L + F    DIH +
Sbjct: 783  QNIPVRTELGRQIRRAFIADPSYVLLTADYSQIELRILANITNEPRLVEAFNQGEDIHTI 842

Query: 781  VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
             AA +F V +E+V+   RR AKT+ ++++YG S + L+    +   +AAD+IKRY   FP
Sbjct: 843  TAASLFSVPVEEVTRDQRRLAKTVVYAVLYGQSAYGLSQVTGMRPGDAADFIKRYHETFP 902

Query: 841  GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
             I  Y+E T    R+ GYV T FGR+    ++       R   ER A+N PIQGS AD+ 
Sbjct: 903  NIKVYVESTLEQARRQGYVNTCFGRKRFIPDMRVLSHVERQALEREAVNMPIQGSNADLI 962

Query: 901  RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
            + AM+ +  +   + + T+M+LQ+HDELVFEVP EE+  A +I+   ME      +  +V
Sbjct: 963  KVAMLRLQHAFLQNGMKTRMILQVHDELVFEVPVEELERAKRIVKAVMEGIGALLVPQKV 1022

Query: 961  PLKVNIKVSNNW 972
            P+KV++K   NW
Sbjct: 1023 PIKVDMKSGKNW 1034



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/294 (38%), Positives = 162/294 (55%), Gaps = 17/294 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   L L+DG + I+RAF+A P       G PVNA  GF +ML K L   R + IA    
Sbjct: 6   KRKKLVLIDGHAIIHRAFHAVPEDLSTSSGEPVNATFGFTSMLMKALLEERPDYIA---- 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD P  TFR+E Y  YKA+RP +P+ + PQ   +R   QAFGI   E  G+EADD++ 
Sbjct: 62  VTFDRPTPTFRHEQYAPYKAHRPTLPDNMRPQFSRIREVVQAFGIEIYEKDGYEADDVLG 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK--------KWGI 174
           T +  A+ +G    I + D D +QLV+        VK  K  I  V++        ++G 
Sbjct: 122 TLSVQAKAQGVDTIIYTGDMDTLQLVNEQVL----VKVAKRGISEVVEYDEKEVQARYGF 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++  + L GD  DNIPG+ GIG KTA  L+ EYGNLENIL +AS +K K+++  + 
Sbjct: 178 APHQLIDYKGLVGDKSDNIPGVAGIGAKTATRLIVEYGNLENILAHASELKPKEQK-LLQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           E  E  R S+ L  +  D P+++ LE   +   +  R+++  + LEF   + RV
Sbjct: 237 EGEEQGRQSKFLATIVLDAPVSLDLEACRMTHVDSERILTLFRQLEFRNQVERV 290


>gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
 gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
          Length = 875

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/589 (39%), Positives = 345/589 (58%), Gaps = 24/589 (4%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           SF+I+T+  +       A+ +   +    T+      FI L+VH+SQ +      T E  
Sbjct: 300 SFEIVTELKEKHFGGKTALYVELENDNYHTAN-----FIGLTVHSSQGTYFFTKETAENS 354

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
              +++ E+E   K+ ++ K   + ++R G+++ G   DIML SY+L+   S  D  S+A
Sbjct: 355 EAFREWVESEQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 413

Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +   YT  E       K  K S P + I  S +   A+     I  L   L   L   +
Sbjct: 414 VRH-DYTEVETDEAVYGKGAKRSTPEESIVASHLARKAV----AIADLEKRLVADLEENE 468

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L + E L+ P+  V+++ME+ G+ +D + L+ +  E++  L +LEE+I+ L+GE+FN++
Sbjct: 469 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNIN 528

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL  P+  KTKTG + T A  LE +  G + II  IL +RQL KI+STY
Sbjct: 529 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 586

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743
            + L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P  
Sbjct: 587 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 646

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V   MRR AK 
Sbjct: 647 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++ GYVETI 
Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L   KL  K+LLQ
Sbjct: 767 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W
Sbjct: 827 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 871



 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 169/309 (54%), Gaps = 10/309 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + PE+++
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D PI   +E    +     ++I  LK + FT L+  +      +A  +
Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEEAKEL 296

Query: 300 EPVVLDINT 308
           + +  +I T
Sbjct: 297 KELSFEIVT 305


>gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 849

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/527 (40%), Positives = 328/527 (62%), Gaps = 32/527 (6%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASI 508
           ++K  +++   K+ +++K    +LHR        ++   D+ML SYVLDS RSS+D+ ++
Sbjct: 348 VEKLLKDQGIQKVVYDLKN---ILHRVDFGDTYQLKNCNDVMLASYVLDSTRSSYDLETL 404

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLH 567
              ++SY   +I               + ++E+    + ++L+ LW  L   + +    +
Sbjct: 405 ---FISYLNTDI---------------AIIKENRWAGATILLRNLWDELSKLIDLNSCQY 446

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           VYE ++ P++ ++ +ME  G +++++ L++ + EI   LL LE  IY ++GE FN++SPK
Sbjct: 447 VYENIEIPLVPILYEMEKIGFKVNKNTLQEYTKEIESKLLKLETQIYQIAGEWFNINSPK 506

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  +LF KLK P   KTKTG + T A+ LE++    + I+  IL++R  +KI +TY   
Sbjct: 507 QLSYVLFEKLKLPVVKKTKTG-YSTDAEVLEEL-YDKHEIVPLILDYRMYTKILTTYCQG 564

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L   IN  T RVH+ +    T TGRLAS E NLQNIP+K D G+ IR+AFI      LI 
Sbjct: 565 LMQAINSVTGRVHSNFIQTGTATGRLASAESNLQNIPVKYDEGRLIRKAFIPEEGYVLID 624

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELRILAHI++   L   F+N+LDIH   AAEIFGV++ +V+P MR  AK +NF 
Sbjct: 625 ADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDVSQVTPTMRSQAKAVNFG 684

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           IIYGIS + L+  ++I R EAA++I RYF ++P + EY++    F R+NG+V T+F R+ 
Sbjct: 685 IIYGISDYGLSKDIKISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTLFNRKR 744

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  +I S   ++RN  ER A+N+PIQGSAADI + AMI V++ L++  L ++++LQ+HDE
Sbjct: 745 YIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVYRRLKEENLKSRIILQVHDE 804

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+ E P EE     +I+   ME A    ++L+VPL V +K   NW E
Sbjct: 805 LLIESPYEEKEIVKEIVKTEMENA----VSLKVPLVVEVKEGLNWYE 847



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 159/289 (55%), Gaps = 12/289 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L + DG+S +YRAF+A P L+   + +P NAI GF N+L K L + R +    + AV FD
Sbjct: 3   LVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFLNVLLKYLDSERPD----YVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R   Y +YKANR  +P+ L  Q+P VR    A  IP +E +G+EADD+I T   
Sbjct: 58  KRGRAARKSEYEEYKANRKPMPDSLQIQIPYVREIISALNIPILEYEGYEADDVIGTLVN 117

Query: 127 IAEKEGFAVTIISTDKDLMQL------VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
             + +   + II+ D+D +QL      V   T  +D   E+   +E+V +K+G+   ++V
Sbjct: 118 RLKNQNLEIVIITGDRDTLQLLDKNVIVKIVTTRFDKTTEDLYTVENVKEKYGVFAHQVV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD+ DNIPG+ GIG KTA  LL+EY  LENI  N   IK    RE +    + A
Sbjct: 178 DYKALVGDASDNIPGVKGIGGKTAIKLLEEYQTLENIYQNLKNIKD-SLREKLEAGKDMA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            LS+KL  +  D+PI + LE L   + +  +L   L  LEF   I R+ 
Sbjct: 237 FLSKKLATIICDLPIEVTLEELKRREWDKKKLYQILLQLEFKSFIKRLG 285


>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
 gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
          Length = 849

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/520 (38%), Positives = 314/520 (60%), Gaps = 39/520 (7%)

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           K+   ++  LK+ H+ K   L++  +   +  F+D+MLMSY LD+    H +  +  ++L
Sbjct: 359 KQILASDSVLKVVHDAK---LIMQHFP-DLGVFDDVMLMSYSLDASSHDHSLTGMTYRYL 414

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
                                    Q+   + +  ++QL  ++R KL+ ++L  VY +L+
Sbjct: 415 H------------------------QKFPAKMACALVQLHSVMREKLLSDRLFTVYYQLE 450

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
           +P++ V+ +M+  GI++D ++LKQ+S +   ++ SLE  IY L+G KFN++S +QLG +L
Sbjct: 451 RPLVRVLYEMQEVGIEVDTEILKQLSRDFHGSIRSLEREIYGLAGCKFNVASARQLGKLL 510

Query: 634 FTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           F ++   S  K   +G + T A+ L ++      I   +L+WR  SK+KSTY D+L   +
Sbjct: 511 FERMGLSSSTKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQV 570

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
              T+RVHT YS+ +T TGR++S  PNLQNIPI++  G +IR+AF++    KL+SADYSQ
Sbjct: 571 ETGTERVHTSYSMVATATGRISSSNPNLQNIPIRSKEGTEIRKAFVAREGHKLVSADYSQ 630

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +EL+I+AHIA +      F    DIH++ A +IFG ++    P++RR AK+INF IIYG+
Sbjct: 631 MELKIMAHIAGVQAFRDAFAEGKDIHQVTAQQIFGDDV--TDPELRRRAKSINFGIIYGM 688

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           SPF LA  + I R EA  Y+++YF  +P I  Y+E  K + R+ GY  T FGR+ +   I
Sbjct: 689 SPFGLAKNVGITRQEATQYVEQYFRSYPEIKNYMEAIKAYARKYGYTRTAFGRKCYVPGI 748

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           NS + +IR   ERAAINAPIQG+AAD+ ++AMI++   LE       ++LQ+HDEL+ EV
Sbjct: 749 NSAQHAIRGFAERAAINAPIQGTAADVVKKAMINLRDKLE----VGTIILQVHDELLVEV 804

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           PE  +   +Q++   ME       +  VPL+V+I V N+W
Sbjct: 805 PESHVDNVAQLMKEVMEGVA----SFSVPLRVDIGVGNSW 840



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/284 (39%), Positives = 173/284 (60%), Gaps = 5/284 (1%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +VD   F++RA+YA P L     G P+  + GF N+L K L     E  A + AV+FD  
Sbjct: 6   VVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLM----EHDADYLAVVFDTG 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +  FR+ +YP YK NRP++PE LL Q   +R A  A GI + E+Q FEADD+IAT +   
Sbjct: 61  SKNFRHAMYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVQNFEADDVIATLSTKY 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
             +   V I++ DKDL+QL+     ++D ++   +  E+V+ K+G+ P++++ + ALTGD
Sbjct: 121 ASQDVQVRIVTADKDLLQLIGEHVQVFDPIRNRYLTNEYVVDKFGVTPDRLLDVLALTGD 180

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + DNIPG+P IG KTAA L+ ++G+L+N+L  A +++QKK RE ++++A+ A LSR LV 
Sbjct: 181 TSDNIPGVPSIGVKTAAKLVNQFGSLDNVLNCAEQVEQKKCREMLIQHADQATLSRDLVS 240

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           L+  V     L+       +  RL++FL+  E   L  ++   Y
Sbjct: 241 LQRTVEFDGDLDKYAKRPPDTERLLAFLEKYELGSLRGKIEQCY 284


>gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912]
 gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912]
          Length = 890

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/517 (41%), Positives = 319/517 (61%), Gaps = 15/517 (2%)

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
           E  L + ++IK  K++  R G ++ G   D++L +Y+++      D+  + +++L  +  
Sbjct: 385 EPGLTVLYDIKSWKVLADRLGFTLPGDAFDVLLAAYLINPQDGHPDLTEVFERYLGVSVP 444

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
             L+ R S          + Q      +  +  ++  L+  L +  L  +Y  L+ P+  
Sbjct: 445 P-LEGRGSP------QGEERQRWWALYAAALAGVYPALKRDLEIRGLWPLYHNLELPLSF 497

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME TG+++D   L+ +    S  +  LEE IY L+G  FNL+SPKQL +ILF KL 
Sbjct: 498 VLAKMERTGVRVDATRLRSLGETFSTEIARLEEEIYKLAGTTFNLNSPKQLAEILFDKLG 557

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KTKTG + T A  LE++    + I++ IL+WRQL K++STY + L   I   T +
Sbjct: 558 LPPQKKTKTG-YSTGADVLEKL-APYHEIVQRILDWRQLIKLQSTYIEGLLKVIRPETGK 615

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRI 757
           +HT +  A T TGRL+S +PNLQNIP++ + G+++R+AFI S    K++SADYSQIELR+
Sbjct: 616 IHTCFQQAVTATGRLSSTDPNLQNIPVRVEEGRRLRQAFIPSESGWKIVSADYSQIELRV 675

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH +K   L Q F + LDIH   AAE+F V  E+V+P MRR AK +NF I+YGIS + L
Sbjct: 676 LAHFSKDPALVQAFRDDLDIHARTAAEVFEVPQEQVTPGMRRQAKAVNFGIVYGISDYGL 735

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           +  L IPR EAA++I RYF +FP +  Y+E+T    R+NG+V T+ GRR +  +I+S   
Sbjct: 736 SQNLGIPRKEAAEFIARYFAKFPRVKSYMEETVAAARKNGFVTTLLGRRRYLPDIHSSNY 795

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           ++R+  ER A+N PIQGSAADI +RAM+ V + L +     KMLLQ+HDELVFEVP EE+
Sbjct: 796 NLRSFAERTAMNTPIQGSAADIIKRAMVEVDRRLTEGDFRAKMLLQVHDELVFEVPPEEV 855

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                ++  +ME A    ++L VPLKV+I   +NW E
Sbjct: 856 GALQDMVKQAMESA----VSLDVPLKVDIHAGDNWYE 888



 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 173/301 (57%), Gaps = 12/301 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S +YRAF+A PLLS   +G   NA+ GF  ML +LLQ  R     +H AV FD
Sbjct: 8   LLLIDGNSILYRAFFALPLLS-NAEGKHTNAVYGFAMMLLRLLQEER----PTHVAVAFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E Y DYK  R K P+ L  Q P+ R    A GIP +E +G+EADD+I T + 
Sbjct: 63  VGKETFRHEFYADYKGTREKTPDELSEQFPMAREMLGAMGIPVLEAEGYEADDLIGTMSR 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKE-EKIDIEHVIKKWGIPPEKMVCL 182
            AE +G  V +++ DKDL+QLVS       T   ++E E+     V K++G+ PE++V L
Sbjct: 123 EAEADGVQVVVLTGDKDLLQLVSSHVTAVLTRRGIREVERYQPADVEKRFGLRPEQIVDL 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DNIPG+PG+G +TAA LLQ YGN+E +  + + +   K +  + E+ + A L
Sbjct: 183 KGLMGDTSDNIPGVPGVGERTAAKLLQAYGNVEGVYQHLNEVS-GKLQGRLAEHRDQAFL 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY--DCDAANIE 300
           S++L  +  +VP+    E L         + + L+ L F  L+ R+   +  D D A   
Sbjct: 242 SKRLARIHREVPLERRWEDLRWVPAPAREVRTALQKLGFRSLLERIGEVFPEDADGAEGT 301

Query: 301 P 301
           P
Sbjct: 302 P 302


>gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108]
 gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108]
          Length = 850

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/512 (42%), Positives = 319/512 (62%), Gaps = 30/512 (5%)

Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           I YD K + H+  +    +++  ED+M+ SYVLDS RSS+++ ++   +L+ T  E +K 
Sbjct: 361 IVYDLKNIFHQLNLEDTDNIKNCEDVMIASYVLDSTRSSYELETLFVSYLN-TDIEAVKK 419

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
            K  + +                 V+L+ LW  L   + +     +YE +++P+I V+ +
Sbjct: 420 DKKMVSV-----------------VLLKRLWDDLLRLIDLNSCQFLYENIERPLIPVLYE 462

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME TG ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P  
Sbjct: 463 MEKTGFKVDRDALLQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVI 522

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT 
Sbjct: 523 KKTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTT 580

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           +    T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI+
Sbjct: 581 FIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHIS 640

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++
Sbjct: 641 EDERLINAFKNNIDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIK 700

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R EAA++I +YF R+P + EY++    F R+NGYV T+F R+ +  +I S   + R+ 
Sbjct: 701 ISRKEAAEFINKYFERYPKVKEYLDNIVRFARENGYVLTLFNRKRYVKDIKSANRNARSY 760

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +
Sbjct: 761 AERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKR 820

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I+   ME A    + L+VPL V +K   NW E
Sbjct: 821 IVKREMENA----VALKVPLVVEVKEGLNWYE 848



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 219/431 (50%), Gaps = 34/431 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L + DG+S +YRAF+A P L+   + +P NAI GF N++ K L+  + + IA    V FD
Sbjct: 3   LVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFINVILKYLEQEKPDYIA----VAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R   Y +YKANR  +P+ L  Q+P VR    A  IP +E +G+EADD+I +   
Sbjct: 58  KRGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYALNIPIVEFEGYEADDVIGSLVN 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180
             +  G  + II+ D+D +QL+     +      +D   E+   IE++ +K+G+   ++ 
Sbjct: 118 KFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQVP 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + A
Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKGSI-REKLEAGKDMA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  + +     ++
Sbjct: 237 FLSKRLATIVCDLPLNVNLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSENIQFEFVQ 296

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN--SEQTPQKLFLERLQKL 358
               DI   E +      E++  + I++ +   +  Q  K     +Q    +F+ R + L
Sbjct: 297 QRT-DIPDVEQR------ELESISRIRSKEIPLMFVQDEKCFYLYDQESNTVFVTRDRHL 349

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            +  + +D+   + + K+I   +             + DT +  + + + IA   LD   
Sbjct: 350 VEEILKSDTVKIVYDLKNIFHQLN------------LEDTDNIKNCEDVMIASYVLDST- 396

Query: 419 DTSFKVETIFI 429
            +S+++ET+F+
Sbjct: 397 RSSYELETLFV 407


>gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175]
 gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220]
 gi|332312007|gb|EGJ25102.1| DNA polymerase I [Listeria monocytogenes str. Scott A]
          Length = 875

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/589 (39%), Positives = 344/589 (58%), Gaps = 24/589 (4%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           SF+I+T+  +       A+ +   +    T+      FI L+VH+SQ +      T E  
Sbjct: 300 SFEIVTELKEKHFGGKTALYVELENDNYHTAN-----FIGLTVHSSQGTYFFTKETAESS 354

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
              +K+ E++   K+ ++ K   + ++R G+++ G   DIML SY+L+   S  D  S+A
Sbjct: 355 EVFRKWVESDQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 413

Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +   YT  E       K  K S P     +S V  H    +  I  L   L   L   +
Sbjct: 414 IRH-DYTEVETDEAVYGKGAKRSTP----EESIVAAHLARKAVAIADLEKRLVDDLEENE 468

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L + E L+ P+  V+++ME+ G+ +D + L+ +  E++  L +LEE+I+ L+GE+FN++
Sbjct: 469 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNIN 528

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL  P+  KTKTG + T A  LE +  G + II  IL +RQL KI+STY
Sbjct: 529 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 586

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743
            + L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P  
Sbjct: 587 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 646

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V   MRR AK 
Sbjct: 647 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++ GYVETI 
Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L   KL  K+LLQ
Sbjct: 767 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W
Sbjct: 827 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 871



 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 161/289 (55%), Gaps = 10/289 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + PE+++
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           A LS++L  +  D PI   +E    +     ++I  LK + FT L+  +
Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 285


>gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459]
 gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
          Length = 875

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/589 (39%), Positives = 344/589 (58%), Gaps = 24/589 (4%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           SF+I+T+  +       A+ +   +    T+      FI L+VH+SQ +      T E  
Sbjct: 300 SFEIVTELKEKHFGGKTALYVELENDNYHTAN-----FIGLTVHSSQGTYFFTKETAESS 354

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
              +K+ E++   K+ ++ K   + ++R G+++ G   DIML SY+L+   S  D  S+A
Sbjct: 355 EVFRKWVESDQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 413

Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +   YT  E       K  K S P     +S V  H    +  I  L   L   L   +
Sbjct: 414 IRH-DYTEVETDEAVYGKGAKRSTP----EESIVAAHLARKAVAIADLEKRLVDDLEENE 468

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L + E L+ P+  V+++ME+ G+ +D + L+ +  E++  L +LEE+I+ L+GE+FN++
Sbjct: 469 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNIN 528

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL  P+  KTKTG + T A  LE +  G + II  IL +RQL KI+STY
Sbjct: 529 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 586

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743
            + L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P  
Sbjct: 587 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 646

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V   MRR AK 
Sbjct: 647 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++ GYVETI 
Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L   KL  K+LLQ
Sbjct: 767 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W
Sbjct: 827 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 871



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/289 (39%), Positives = 161/289 (55%), Gaps = 10/289 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + P++++
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPQQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           A LS++L  +  D PI   +E    +     ++I  LK + FT L+  +
Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 285


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/536 (40%), Positives = 336/536 (62%), Gaps = 13/536 (2%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504
           T E    ++  FEN+   KIG NIK+D +VL + G+ +RG + D M++ Y+LD   S H+
Sbjct: 427 TAEYTEIVRPLFENDRIAKIGQNIKFDLMVLRQLGLEIRGRKYDTMILHYLLDP-ESRHN 485

Query: 505 IASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           + ++A+K+L+Y   EI   +      + +D ++  +V+E+A E+++V L+L   L P++ 
Sbjct: 486 MNALAEKYLNYKPIEIETLIGKGSKQLTMDLVNVERVKEYAAEDADVTLRLKHALYPQIE 545

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-K 620
              L H+Y  +++PMI V++ +E+ G++ID + L   S E+S+ L  LE  I + +GE +
Sbjct: 546 ELGLQHLYFEIEEPMIAVLADIEMAGVRIDSEALAVYSVELSRRLAELEAAICEEAGESQ 605

Query: 621 FNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            N++S +QLG++LF K++     K TKT Q+  T +D  Q     + I+  ILE+R + K
Sbjct: 606 LNINSARQLGEVLFGKMRIAEKPKMTKTKQF-CTDEDYLQSFAHKHRIVDLILEYRGVKK 664

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI- 738
           + STY ++LP  +N+RT R+HT ++ A T TGRL+S  PNLQNIP++ ++G++IRRAFI 
Sbjct: 665 LLSTYVEALPQLVNRRTGRIHTSFNQAVTATGRLSSTNPNLQNIPVREEMGRRIRRAFIP 724

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           S     L+SADYSQ+ELR++AH++    L   F +  DIH   AA++F   +++V+ + R
Sbjct: 725 SDEEHLLLSADYSQVELRLMAHLSGDESLIAAFAHGEDIHAATAAKLFNKTLDEVTSEER 784

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R AKT NF IIYGIS F L+ +L IPR EA + I  YF  +P + EY++      ++ G+
Sbjct: 785 RRAKTANFGIIYGISAFGLSQRLEIPRKEAKEIIDGYFASYPKVQEYMDNVVAKAKEEGF 844

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V TIFGRR + ++I S  +  R + ER A+NAPIQGSAADI + AMI+VH+      + +
Sbjct: 845 VSTIFGRRRYLNDIASHNAIARGLAERNAVNAPIQGSAADIMKIAMINVHRRFAAEGIRS 904

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K++LQ+HDELV ++   E      I+  +ME A      L+V L V+  V  NW E
Sbjct: 905 KVILQVHDELVVDMLRSEQERVVAIVTEAMESAA----ALKVRLVVDYGVGGNWLE 956



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 161/288 (55%), Gaps = 15/288 (5%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFLVD  + I++ +YA    P+ +R   G+  + + GF     K L++ +K        V
Sbjct: 4   LFLVDAYALIFKYYYAFLGRPMRNRA--GMNTSVVFGFV----KFLRDIQKRERPDLLGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR E++P+YKANR + PE +L  +P V+   +A  IP +E++G+EADD+I T
Sbjct: 58  AFDPKGGSFRREVFPEYKANRAETPEDILLSVPYVKRVLEAMCIPILEVEGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +    + G+ V +++ DKD  QLV     +Y         E +D + + +K+GI    +
Sbjct: 118 LSQKGVEAGYEVFMVTPDKDYGQLVRDNCKIYKQKGADGSIEIVDRDSIREKYGIDDPVL 177

Query: 180 VC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           V  + AL GD+ DNIPG+PGIG K+A  L+QE+G +ENIL N S+IK K+  E I  + +
Sbjct: 178 VRDILALWGDASDNIPGVPGIGEKSACKLVQEWGTVENILDNVSKIKGKQ-GEKIAAWGD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             RL++ L  +  DVPI    E L + D +   L +    L+F   +N
Sbjct: 237 KLRLAKHLTTICLDVPIPFRPEDLTVCDPHIDELKAVFAELDFKAFMN 284


>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
 gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
          Length = 875

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/492 (43%), Positives = 300/492 (60%), Gaps = 33/492 (6%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ED+ LM Y L +G S  ++            KE+LK            ++ ++   IE++
Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLK------------ETWIENIIIESA 447

Query: 547 NVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            +++    L +    +L   K   +Y  +D P+  ++ +ME  GI +D + LKQ+SAE  
Sbjct: 448 KIVINFITLYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEFG 507

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINC 662
             +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A  K   + T A+ LE+++ 
Sbjct: 508 TEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSE 567

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
               I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+S EPNLQN
Sbjct: 568 HGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTKFLQTSTTTGRLSSQEPNLQN 627

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           +PI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N  DIH   A
Sbjct: 628 VPIRSSEGNQIRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA++YIK+YF  + G+
Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG+ ADI + 
Sbjct: 748 QEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIKI 805

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +     N+ VP+
Sbjct: 806 AMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMDVPI 861

Query: 963 KVNIKVSNNWQE 974
              I+  NNW E
Sbjct: 862 ITEIRAGNNWME 873



 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/294 (42%), Positives = 176/294 (59%), Gaps = 7/294 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+YA  PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+G   +K+
Sbjct: 115 IIATFATKTAALGEHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    ET
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSRET 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D
Sbjct: 235 ALISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288


>gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S]
          Length = 875

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/552 (41%), Positives = 328/552 (59%), Gaps = 19/552 (3%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           FI L+VH+SQ +      T E     +K+ E++   K+ ++ K   + ++R G+++ G  
Sbjct: 332 FIGLTVHSSQGTYFFTKETAESSEAFRKWVESDQ-TKVVYDAKKTIVAMNRIGLAISGIT 390

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541
            DIML SY+L+   S  D  S+A +   YT  E       K  K S P     +S V  H
Sbjct: 391 FDIMLASYLLNPSDSIDDFTSVAVRH-DYTEVETDEAVYGKGAKRSTP----EESIVAAH 445

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +  I  L   L   L   + L + E L+ P+  V+++ME+ G+ +D D L+ +  E
Sbjct: 446 LARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTDRLEDMKVE 505

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +   L +LE +I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG + T A  LE + 
Sbjct: 506 LGGRLKTLEASIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL- 563

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQ
Sbjct: 564 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  +P
Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYP 743

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI 
Sbjct: 744 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 803

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L V
Sbjct: 804 KKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 859

Query: 961 PLKVNIKVSNNW 972
           PLKV+    + W
Sbjct: 860 PLKVDSAFGDTW 871



 Score =  201 bits (510), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 161/289 (55%), Gaps = 10/289 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + PE+++
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           A LS++L  +  D PI   +E    +     ++I  LK + FT L+  +
Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 285


>gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816]
          Length = 694

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/589 (39%), Positives = 344/589 (58%), Gaps = 24/589 (4%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           SF+I+T+  +       A+ +   +    T+      FI L+VH+SQ +      T E  
Sbjct: 119 SFEIVTELKEKHFGGKTALYVELENDNYHTAN-----FIGLTVHSSQGTYFFTKETAESS 173

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
              +K+ E++   K+ ++ K   + ++R G+++ G   DIML SY+L+   S  D  S+A
Sbjct: 174 EVFRKWVESDQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 232

Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +   YT  E       K  K S P     +S V  H    +  I  L   L   L   +
Sbjct: 233 IRH-DYTEVETDEAVYGKGAKRSTP----EESIVAAHLARKAVAIADLEKRLVDDLEENE 287

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L + E L+ P+  V+++ME+ G+ +D + L+ +  E++  L +LEE+I+ L+GE+FN++
Sbjct: 288 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNIN 347

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL  P+  KTKTG + T A  LE +  G + II  IL +RQL KI+STY
Sbjct: 348 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 405

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743
            + L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P  
Sbjct: 406 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 465

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V   MRR AK 
Sbjct: 466 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 525

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++ GYVETI 
Sbjct: 526 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 585

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L   KL  K+LLQ
Sbjct: 586 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 645

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W
Sbjct: 646 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 690



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAETARLSRK 245
           GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E A LS++
Sbjct: 2   GDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKELAILSKE 61

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           L  +  D PI   +E    +     ++I  LK + FT L+  +
Sbjct: 62  LATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 104


>gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988]
 gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561]
 gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161]
 gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818]
 gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818]
          Length = 875

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/552 (41%), Positives = 328/552 (59%), Gaps = 19/552 (3%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           FI L+VH+SQ +      T E     +K+ E++   K+ ++ K   + ++R G+++ G  
Sbjct: 332 FIGLTVHSSQGTYFFTKETAESSEAFRKWVESDQ-TKVVYDAKKTIVAMNRIGLAISGIT 390

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541
            DIML SY+L+   S  D  S+A +   YT  E       K  K S P     +S V  H
Sbjct: 391 FDIMLASYLLNPSDSIDDFTSVAVRH-DYTEVETDEAVYGKGAKRSTP----EESIVAAH 445

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +  I  L   L   L   + L + E L+ P+  V+++ME+ G+ +D D L+ +  E
Sbjct: 446 LARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTDRLEDMKVE 505

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +   L +LE +I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG + T A  LE + 
Sbjct: 506 LGGRLKTLEASIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL- 563

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQ
Sbjct: 564 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  +P
Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYP 743

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI 
Sbjct: 744 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 803

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L V
Sbjct: 804 KKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 859

Query: 961 PLKVNIKVSNNW 972
           PLKV+    + W
Sbjct: 860 PLKVDSAFGDTW 871



 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 161/289 (55%), Gaps = 10/289 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + PE+++
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           A LS++L  +  D PI   +E    +     ++I  LK + FT L+  +
Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 285


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/527 (40%), Positives = 316/527 (59%), Gaps = 26/527 (4%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           +IL  LK   E+ +  K  HN K    +LHR GI++R    D M+ +Y+L+   S+ D+ 
Sbjct: 374 KILEILKTICEDGNIKKYCHNGKETIRLLHRNGITLRQLAFDTMIAAYLLNPASSNQDLE 433

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            I+ + L+     +L      +P         Q H       I++L  LL  KL +    
Sbjct: 434 DISLEHLN----AVLPGEDRKLP--------AQAH------CIMELAQLLDNKLKLYGQD 475

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            ++  ++ P+  ++++MEI G+ +D+  L+ +S E+ + +  L + IY L+G +FN++SP
Sbjct: 476 RLFYEIEIPLAGILAEMEIEGVAVDKKQLEAMSEELGRQIEKLADEIYRLTGREFNINSP 535

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG +LF  LK P   KTKTG + T A  LE++      + K ILE+RQ++K+KSTYAD
Sbjct: 536 KQLGKVLFEDLKLPVIKKTKTG-YSTDADVLEELAAAHEAVAK-ILEYRQMAKLKSTYAD 593

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            L   IN  T ++HT +    T TGRL+S +PNLQNIPI+ + G+ IR+ FI   P   L
Sbjct: 594 GLAALINPETGKLHTTFHQTVTNTGRLSSSDPNLQNIPIRLEAGRLIRKVFIPGRPENLL 653

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ++ADYSQIELR+LAHI+    L + F+N  DIH   AAEIF V  E+V+ +MR  AK +N
Sbjct: 654 LTADYSQIELRVLAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVN 713

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YG+S F LA  +++ R EA  YI+ YF R+ G+ +YIE+     RQ GYV T+  R
Sbjct: 714 FGIVYGLSDFGLARDIKVSRQEARRYIENYFARYAGVKDYIERIIREARQKGYVTTLLNR 773

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  ++ SP  +IR+  ER A+N PIQGSAADI + AM+++H+ L +H L  KM+LQ+H
Sbjct: 774 RRYLPDLFSPNRTIRSFGERTAMNTPIQGSAADIIKLAMVNIHRELAEHGLKAKMILQVH 833

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+ P  EI     ++   ME A +    L VPL V IK   NW
Sbjct: 834 DELIFDAPAVEIDQLKDLVKRCMENALV----LEVPLLVEIKAGRNW 876



 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 164/286 (57%), Gaps = 10/286 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DG+S  +RA++A P LS    G+  NA+ GF NML K+L     + IA    V FD
Sbjct: 6   MVIIDGNSLAHRAYHAIPPLSTSQ-GILTNAVYGFTNMLLKILAEEHPDRIA----VAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              +TFR++ +  YKA+RP  P+ L PQ P+++   +A  I   E +G+EADD+I T + 
Sbjct: 61  KGKITFRHDDFEKYKAHRPATPDDLRPQFPVLKEVLKAMRIQVFEAEGYEADDLIGTLSA 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE+ G    I++ D+D +QLVSP T +    K     ++ D   V +++GI P +    
Sbjct: 121 RAEQAGLRTIIVTGDRDALQLVSPLTSVRLVKKGISELDEYDEGMVWQRYGITPRQYADF 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + LTGD+ DNIPGIPGIG KTA+ LL+EYG+LE I+ +A  +  +   E +  Y   A L
Sbjct: 181 KGLTGDASDNIPGIPGIGEKTASRLLKEYGSLEEIIAHADELAGRT-GELVKTYKHQAEL 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           S+KL  +  DVP+ I L     +  +   L+   K LEF  LI  +
Sbjct: 240 SKKLATIHRDVPVEIDLALCRWQGPDHKELLEIFKKLEFKSLIKSI 285


>gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/511 (42%), Positives = 318/511 (62%), Gaps = 28/511 (5%)

Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           I YD K + H+  +    +++  ED+M+ SYVLDS RSS+++ ++   ++SY   +I   
Sbjct: 361 IMYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRSSYELETL---FVSYLNTDIEAV 417

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           +K              +  I +  ++ +LW  L   + +     +YE +++P+I V+ +M
Sbjct: 418 KK--------------DKKIVSVVLLKRLWDELLRLIDLNSCQFLYESIERPLIPVLYEM 463

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TG ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   
Sbjct: 464 EKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +
Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
               T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++
Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISE 641

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I
Sbjct: 642 DERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKI 701

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EAA++I +YF R+P + EY++ T  F R NG+V T+F R+ +  +I S   ++R   
Sbjct: 702 SRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYA 761

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N+PIQGS ADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I
Sbjct: 762 ERIAMNSPIQGSPADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEI 821

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A    + L+VPL V +K   NW E
Sbjct: 822 VKREMENA----VRLKVPLVVEVKEGLNWYE 848



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 163/291 (56%), Gaps = 12/291 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L + DG+S +YRAF+A P L+  ++ +P NAI GF N++ K L+  + +    + AV FD
Sbjct: 3   LVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R   Y +YKANR  +P+ L  Q+P VR    AF IP IE +G+EADD+I +   
Sbjct: 58  KRGREARKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVN 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180
             +  G  + II+ D+D +QL+     +      +D   E+   +E+V +K+G+   ++ 
Sbjct: 118 QFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDKTVEDLYTVENVKEKYGVWANQVP 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + A
Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKS-SIREKLEAGKDMA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  +
Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287


>gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 885

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/616 (36%), Positives = 364/616 (59%), Gaps = 20/616 (3%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           N D  +K+    +    +Q+L  +      I+  + D F  + ++I     + K+  SF 
Sbjct: 265 NFDELSKLYREYEFNSLLQRL-PVEYQKENIVETSSDDFEYRNMSIDDIIFEIKNSKSFA 323

Query: 424 VETI------------FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
            + I            FI + V        K    ++IL + K  FE+E+  K+GHN+K 
Sbjct: 324 FKIISDGKIYEGIMPNFIAIKVQNEATCIIKIDCKEDILKF-KDVFEDENIEKLGHNLKE 382

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
           D + L  + I+++ +  D  +  Y+L+S  S++DI +I+  + S   K++ +        
Sbjct: 383 DMITLLNFDINIKNYTHDSEIAEYILNSTESNYDINNISNTYFSRGYKDLEELLGKGKKK 442

Query: 531 DKISDSQVQEHAIENS---NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            K SD +  E     S   N + +L  +   K+  +++  +Y  ++ P+I+V+S ME+ G
Sbjct: 443 IKFSDLKYDELCKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIG 502

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I+ D  +L ++  ++   +L+LE +IY+ +GE+FN++SPK+LG ILF KL +P   KTKT
Sbjct: 503 IRTDNAILDEIGIDLDNKILNLENDIYEKAGEEFNINSPKKLGLILFDKLGYPVLKKTKT 562

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T A  LE++   D  II ++LE+R+L+K+KSTY + L   IN  T  +H+ ++   
Sbjct: 563 G-YSTNADVLEKLK-KDGDIIDDVLEYRKLAKLKSTYVEGLKELINVATGHIHSHFNQTI 620

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGR++S  PNLQNIPIKTD G+ IR+AF+S     L+ ADYSQIELR+LA I+K   +
Sbjct: 621 TSTGRISSTNPNLQNIPIKTDEGKLIRKAFLSSEGCVLVDADYSQIELRVLADISKDENM 680

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              FEN  DIHR  AA++FGV+ E V+P +R  AK +NF I+YGIS + L+  L IPR  
Sbjct: 681 ISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNFGIVYGISDYGLSQNLNIPRKL 740

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A +YI+ Y   + GI  Y+ +     ++NGYV+TI  RR +  E+++   +IR+  ER A
Sbjct: 741 AQEYIENYLLTYDGIKNYMTEEVKLAKKNGYVKTILNRRRYIPELSAKNFNIRSFGERIA 800

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           IN PIQGSAADI + AM+ V+++L+++ L +K++LQIHDEL+ +  E+E+ T  +++ + 
Sbjct: 801 INTPIQGSAADIIKIAMVKVYRALKENNLKSKLILQIHDELIVDAREDEVETVKKLMRNI 860

Query: 948 MEKACLPKINLRVPLK 963
           ME A    + L+V ++
Sbjct: 861 MENAVEMVVKLKVDMQ 876



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 156/290 (53%), Gaps = 9/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DGSS  +RAFYA PLL  K  G+  NAI GF  ML    +N+  +   ++  V FD
Sbjct: 5   ILIIDGSSLFFRAFYALPLLKTKR-GIYTNAIYGFIMML----ENAISKINPNNVVVCFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++IY DYK  R K P  L  Q P+VR       I  +E   +EADDI  T + 
Sbjct: 60  MKGKTFRSDIYKDYKGTRQKTPSELEQQFPIVREILSLMNIKTLESPIYEADDIAGTISL 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           IA +  +   +++ DKD  QLV   T +  T K     E I +E + + +GI P++ + L
Sbjct: 120 IASENNYESILLTGDKDYFQLVDDNTKVLLTRKGITDLEIISVESIEESYGINPKQFIDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DNIPG+PG+G KTA  L+ EY N+EN+  N   I  KK +EN+      A +
Sbjct: 180 KGLMGDNSDNIPGVPGVGEKTALKLIHEYSNIENLYDNIDNISGKKLKENLETNKMQAFM 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           S+KL  +  +VP+ + ++     D N   L    +  EF  L+ R+   Y
Sbjct: 240 SKKLGTIVRNVPLDMEIDDFAYADYNFDELSKLYREYEFNSLLQRLPVEY 289


>gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
 gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
          Length = 1045

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 328/1095 (29%), Positives = 520/1095 (47%), Gaps = 188/1095 (17%)

Query: 8    FLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              VDG S  +R++YA         +   G+P +   GF   L +++   + E    + A+
Sbjct: 9    LFVDGHSLAFRSYYAFAKSRNGGLKTSTGIPTSICFGFLKSLLEVINTQKPE----YLAI 64

Query: 64   IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             FD    TFR+E   +YKA+RP+ PE L+  L  ++   +AF +  I   G+EADDI+ T
Sbjct: 65   AFDLGKPTFRHEADKNYKADRPEPPEDLIIDLGNLQDLLKAFNLTVITAPGYEADDILGT 124

Query: 124  YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--------DTVKEEKIDIEHVIKKWGIP 175
                A   GF V I+S D+DL QL+     +          ++ +E    E V +K GI 
Sbjct: 125  LAKKASATGFKVKILSGDQDLFQLIDAEKGISVLHLPGGKGSIPQEFFP-EEVKEKLGIL 183

Query: 176  PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            P ++V  +AL GD  DNIPG+ GIG KTA  LL EYG L  I  +  +IK   +++ +L 
Sbjct: 184  PTQVVDYKALCGDKSDNIPGVRGIGQKTAVKLLNEYGCLSEIYASLEQIKGANKKKLVLG 243

Query: 236  YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
              E A  S+ +  +  +VP+ I +E    +      +   L+ LE    IN++       
Sbjct: 244  KTE-AEHSQFMAKIEVNVPLNIDIEDCKFKKIYPSEIEPILQKLELQHFINKIPHLEQQF 302

Query: 296  AANIE-PVVLDINTTENKGIAIET--EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             + +E    LD +  + + I+  T  EI  D    +++ + ++ Q +   S+  PQ   +
Sbjct: 303  NSLVEVKSGLDESGIQQQEISQNTLVEIGSDDWFFSAEDTKVAKQQTSTKSKIKPQ--IV 360

Query: 353  ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            + ++KL+          K+VN    Q+           ++   T +++   ++ + I   
Sbjct: 361  DTIEKLN----------KLVNILKEQKNPHI-----PVAWDTETTSLEPRDAELVGIGCC 405

Query: 413  TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                 +D ++          + T    T KN     +L  LK   E+  + K+  N K+D
Sbjct: 406  WGKNMEDVAY----------IPTGH-KTDKNLDKVTVLESLKPVLESSEYPKVFQNSKFD 454

Query: 473  KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
            +LV    GI + G F D ML SYVL+   + H +  I  ++L          R   I + 
Sbjct: 455  RLVFRCQGIKLTGVFFDTMLASYVLNP-EAKHSLEEIYIRYL----------RNVGINLQ 503

Query: 532  KISDSQVQEHAIENSNVI-------LQLWLLLRPKLIVEKLLHVYERLDK---------- 574
               D   +   I + +++        Q+W+  +   +VEKL    E+ DK          
Sbjct: 504  SYQDVVSKNQTIADLDILKVADYCGTQVWVTFQ---LVEKLRTELEKADKNKSTEKSLYR 560

Query: 575  -------PMIDVVSQMEITGIQID------------------------------------ 591
                   P+  V+++ME  GI+ID                                    
Sbjct: 561  LLVDVEQPLEPVLAEMEFQGIRIDIEYLKKFSVQLKEDLEEIEKRAFKTVDSQVLQKYLQ 620

Query: 592  --------------QDLLKQVSAEISK------------NLLSLEENIYDL-SGEKFNLS 624
                          Q+L K +S+ I K            NL ++E  I  + + +  NL+
Sbjct: 621  TEIHEIDFNSFSNQQELKKAISSPILKAYITKLLKEHRQNLENIESQINQVETRDLLNLN 680

Query: 625  SPKQLGDILFTKLK--FPSGAKTKTGQWKTTAQDLEQINCG--DNPIIKNILEWRQLSKI 680
            SP QL ++LF  L        + KTG + T    LE++      +PII  IL  R L K+
Sbjct: 681  SPSQLSELLFRILNQNHKKSRRIKTG-YSTDVVALEKLQTEPEHHPIIDEILNHRTLYKL 739

Query: 681  KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
             STY +++P  +   TQRVHT ++   T TGRL+S EPNLQNIPI T   ++IR+AF+  
Sbjct: 740  FSTYVEAIPRLVRSDTQRVHTNFNQTQTDTGRLSSSEPNLQNIPIGTKFSRQIRQAFLPK 799

Query: 741  PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
                L++ADYSQIELRILAH+++   L + ++N+ D+H + A  +F    E++S + RR 
Sbjct: 800  KDWLLVAADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTAKLLF--EKEEISSEERRV 857

Query: 801  AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
             KTINF +IYG+   +LA  ++I   E+  ++++Y  ++  +  Y+EK K      GYVE
Sbjct: 858  GKTINFGVIYGMGAQKLARSVKITVKESKQFLEKYKQQYSLVFAYLEKLKKQAIAKGYVE 917

Query: 861  TIFGRRIHYDEINSPKSSIRNINE---------------------RAAINAPIQGSAADI 899
            TI GRR  Y E+ S   +IR++ +                     R+A N+PIQGS+ADI
Sbjct: 918  TILGRR-RYFELES--KTIRDLKDKEPEEINLQELKFSQNDAQILRSAANSPIQGSSADI 974

Query: 900  TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
             + AMI ++K L +++  TK+LLQ+HDELVFEVP  E+    Q+I  +ME A    + L+
Sbjct: 975  IKIAMIRLNKILTNYQ--TKLLLQVHDELVFEVPPSELEKMQQLIKSTMENA----VTLK 1028

Query: 960  VPLKVNIKVSNNWQE 974
            VPL V+I    NW E
Sbjct: 1029 VPLIVDIHGGKNWME 1043


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/615 (35%), Positives = 366/615 (59%), Gaps = 28/615 (4%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-E 425
            Y  + +  + ++ V+KL+   S +  + T ++D F    + I++S         FK  E
Sbjct: 297 GYKIVKDLGEFEKLVEKLKESPSFAVDLETSSLDPFDCDIVGISVS---------FKPKE 347

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484
             +I L    +Q     N   KE+L  LK+  E+     +G N+K+D  VL   G+  + 
Sbjct: 348 AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVP 402

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKSSIPIDKISDSQVQE-- 540
              D M+ +Y+++      ++  +A K+L Y  T  + L S  S +     +D  V++  
Sbjct: 403 PHFDTMIAAYLIEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFADVPVEKAA 462

Query: 541 -HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            ++ E++++  +L+  L  KL    L +V+ +++ P+++V+++ME+ G+ +D + LK++S
Sbjct: 463 NYSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLS 522

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLE 658
            E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG + T  + LE
Sbjct: 523 EEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLE 582

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++  G++ II  ILE+R++ K+KSTY D+LP  +N +T R+H  ++   T TGRL+S +P
Sbjct: 583 EL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRLSSSDP 641

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE  +D+
Sbjct: 642 NLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDV 701

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H + A+ IF V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L +P  EA   I  YF 
Sbjct: 702 HTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMIVNYFV 761

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P + +YI++  +  ++ GYV T+FGRR    ++ +   + +   ER AIN PIQG+AA
Sbjct: 762 LYPKVRDYIQRVVSEAKEKGYVRTLFGRRRDIPQLMARDRNTQAEGERIAINTPIQGTAA 821

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI + + L++ K+ TKM++Q+HDELVFEVP+EE     +++   M       + 
Sbjct: 822 DIIKLAMIEIDRELKESKMKTKMIIQVHDELVFEVPDEEKDALVELVKDRMTNV----VK 877

Query: 958 LRVPLKVNIKVSNNW 972
           L VPL+V++ +   W
Sbjct: 878 LSVPLEVDVTIGKTW 892



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/264 (40%), Positives = 159/264 (60%), Gaps = 12/264 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS---HFA 62
            LFL DG++  YRA+YA         G+P NA  G   ML + +    K+ IA+     A
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSTGIPTNATYGMARMLVRFI----KDHIATGKDFAA 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD  A TFR+++   YKA RPK P++L+ QLP ++   +A G+  +E++G+EADDIIA
Sbjct: 59  VAFDKKAATFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIA 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T           + I++ DKD++QLV+    ++  VK     E  D + V +K+G+ P++
Sbjct: 119 TLAVKGLPLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPQQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  L ALTGD IDNIPG+ GIG KTA  LL++Y +LE+I+ +   + QK R+  +L   E
Sbjct: 179 IPDLLALTGDEIDNIPGVTGIGEKTAVQLLEKYKDLEDIMNHIHELPQKVRK-ALLRDRE 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHL 262
           +A LS+KL +L T+VPI I  E L
Sbjct: 238 SAVLSKKLAILETNVPIEINWEEL 261


>gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/498 (42%), Positives = 318/498 (63%), Gaps = 14/498 (2%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDKISDS 536
           G+ +RG + D+++ SY+L+  +S+ D+ASIA+  +++     E +  + +     K+ D 
Sbjct: 386 GVHLRGIQFDLLIASYLLNPSQSTEDVASIAKTKQYVGVQSDEAVYGKGAK---QKVPDE 442

Query: 537 QV-QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           QV  EH +  +  I  L       L   +   ++  L+ P+  ++++ME  G+++D + L
Sbjct: 443 QVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERL 502

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  E+++ L  +E+ IY L+G++FN++SPKQLG ILF KL+ P   KTKTG + T+A+
Sbjct: 503 KEMGEELAEQLKEVEQEIYRLAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YSTSAE 561

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    + I++ IL +RQL K++STY + L   +++ T +VHT ++ A T TGRL+S
Sbjct: 562 VLEKL-APQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSS 620

Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPI+ + G+KIR+AFI S P   + SADYSQIELR+LAHIA    L   F + 
Sbjct: 621 TEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHG 680

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIH   A +IF V+ E+V+P MRR AK +NF I+YGIS + L+  L I R EAA++IKR
Sbjct: 681 LDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIKR 740

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FPG+ +Y++      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 741 YFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQG 800

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI ++AMI + K L+   +  +MLLQ+HDEL+ E P++EI    QI+   ME A   
Sbjct: 801 SAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENA--- 857

Query: 955 KINLRVPLKVNIKVSNNW 972
            + LRVPLKV+      W
Sbjct: 858 -VQLRVPLKVDYHFGPTW 874



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/288 (39%), Positives = 169/288 (58%), Gaps = 11/288 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L+  +     +H  V FD
Sbjct: 6   LVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLMKILEEEK----PTHMLVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + +YK  R K P  L  Q PL+R    A+ I   E++ +EADDII T   
Sbjct: 61  AGKTTFRHKTFEEYKGGRQKTPPELSEQFPLLRELLNAYQIRFYELENYEADDIIGTLCA 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181
            AE EGF V +IS D+DL QLVS    + D  K+   D+E      V +K+G+ P++++ 
Sbjct: 121 KAENEGFEVKVISGDRDLTQLVSDHVTV-DITKKGITDVESYTPETVREKYGLAPQQIID 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+PGIG KTA  LL+E+G++ENIL +  +I   K +EN+ ++ + A 
Sbjct: 180 LKGLMGDKSDNIPGVPGIGEKTALKLLKEFGSIENILDSIEQISGNKLKENLEKHRDLAL 239

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +S++L  +  D PI +  E +     +  ++I+  K L F  L+ ++A
Sbjct: 240 MSKQLATILRDAPIDLSFEDIEYRGYDVDKVIALFKELSFNSLLGKMA 287


>gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262]
 gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262]
          Length = 875

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/589 (39%), Positives = 344/589 (58%), Gaps = 24/589 (4%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           SF+I+T+  +       A+ +   +    T+      FI L+VH+SQ +      T E  
Sbjct: 300 SFEIVTELKEQHFGGKTALYVELENDNYHTAN-----FIGLTVHSSQGTYFFTKETAEKS 354

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           +  + + E++   K+ ++ K   + ++R G +++G   DIML SY+L+   S  D  S+A
Sbjct: 355 AVFRNWVESDE-TKVVYDAKKTMVAMNRIGFAIKGVTFDIMLASYLLNPSDSIDDFTSVA 413

Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +   YT  E       K  K S P + I    V  H    +  I +L   L   L   +
Sbjct: 414 VRH-DYTEVETDEAIYGKGAKRSTPEENI----VAAHLARKAVAIAELEKRLVDDLEENE 468

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L + E L+ P+  V++QME+ G+ +D   L+ +  E++  L +LEE+I+ L+GE+FN++
Sbjct: 469 QLALMEDLELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLAGEEFNIN 528

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL+ P   KTKTG + T A  LE +  G + II  IL +RQL KI+STY
Sbjct: 529 SPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 586

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743
            + L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P  
Sbjct: 587 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 646

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V   MRR AK 
Sbjct: 647 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++ GYVETI 
Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L+   L  K+LLQ
Sbjct: 767 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLKSENLEAKLLLQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W
Sbjct: 827 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 871



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 168/309 (54%), Gaps = 10/309 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + P +++
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASRKTTVYITKKGIADMETNTPETLKEKYDLTPSQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D PI   +E    +     ++I  LK + FT L+  +      +A  +
Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTAEEAKEL 296

Query: 300 EPVVLDINT 308
           + +  +I T
Sbjct: 297 KELSFEIVT 305


>gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023]
          Length = 552

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/552 (41%), Positives = 329/552 (59%), Gaps = 19/552 (3%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           FI L+VH+SQ +      T E  +  + + E+E   K+ ++ K   + ++R G +++G  
Sbjct: 9   FIGLTVHSSQGTYFFTKETAEKSAVFRDWVESEE-TKVVYDAKKTMVAMNRIGFAIKGVT 67

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541
            DIML SY+L+   S  D  S+A +   YT  E       K  K S P + I    V  H
Sbjct: 68  FDIMLASYLLNPSDSIDDFTSVAVRH-DYTEVETDEAIYGKGAKRSTPEEDI----VAAH 122

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +  I +L   L   L   + L + E L+ P+  V++QME+ G+ +D   L  +  E
Sbjct: 123 LARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTQRLGNMKVE 182

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG + T A  LE + 
Sbjct: 183 LAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL- 240

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQ
Sbjct: 241 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 300

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH  
Sbjct: 301 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 360

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  +P
Sbjct: 361 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYP 420

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI 
Sbjct: 421 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 480

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI + + L+   L  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L V
Sbjct: 481 KKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 536

Query: 961 PLKVNIKVSNNW 972
           PLKV+    + W
Sbjct: 537 PLKVDSAFGDTW 548


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/545 (39%), Positives = 331/545 (60%), Gaps = 13/545 (2%)

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLM 492
           HT  D+  +  L++ +++ ++   EN    K+G NIKYD +VL R+GI M+G   D M+ 
Sbjct: 350 HTGMDAKKQPDLSR-VIALIRPLLENPEVKKVGQNIKYDYIVLTRHGIRMQGLGFDTMIA 408

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           S++L+  +  H +  IA   L +     KE+  S K+ I  +++      ++A E++++ 
Sbjct: 409 SHLLNPSQRGHSLDKIAMDLLDHKTIRYKEVTGSGKTQIGFNEVEIQTALDYAAEDADIT 468

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           L    +L+ KL    LL +  +++ P+I V++ ME+ GI++D+  L ++S    + +++L
Sbjct: 469 LLCHGILKQKLQESNLLDLMNQVEMPLITVLADMEMHGIKVDRKKLGELSKTFEQEMMTL 528

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDNPI 667
           E  IY L+GE FN++S +QLG ILF KL+ P+  KTK     +T  D+E +N     + +
Sbjct: 529 ETQIYALAGETFNINSSQQLGTILFEKLQLPAKKKTKKKTGYST--DVEVLNELAEHHEL 586

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            + IL +R L K+KSTY+D+L   I+  T R+HT ++ A T TGRL+S +PNLQNIPI+T
Sbjct: 587 PEKILRYRSLGKLKSTYSDALQELIHPETGRIHTSFNQAITATGRLSSSDPNLQNIPIRT 646

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           + G+ IR AF+  P   L++ADYSQIELR+LAH A+   L Q F N  DIH   AAE+F 
Sbjct: 647 NEGKMIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQSFRNDEDIHTRTAAEVFQ 706

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
              E ++  +RR AK INF I+YG+S F+LA ++ + R  A  YI  YF R+ G+  +I+
Sbjct: 707 AFPEFITEDLRRQAKAINFGIMYGMSAFKLAKEINVTRKTAQTYIDSYFARYAGVKRFID 766

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           KT    +  G V TI GR+   ++IN+   ++R + ERAAIN P+QGSAAD+ + AMI++
Sbjct: 767 KTIEQAKTTGEVTTILGRKRRLNDINASNVNLRKLAERAAINTPVQGSAADLIKLAMINM 826

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            + L+   L ++MLL +HDE++FE P  E      +    ME        L+VPLKVNI 
Sbjct: 827 DRELKKTPLKSRMLLSVHDEIIFETPLAEKEALMDLARQVMEGV----FALKVPLKVNIA 882

Query: 968 VSNNW 972
              NW
Sbjct: 883 AGINW 887



 Score =  227 bits (579), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 119/282 (42%), Positives = 175/282 (62%), Gaps = 6/282 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + +++LVDGS+++YRAF+A   LS    G+P NA  GF  +L KL++  + E    + AV
Sbjct: 2   KQNIYLVDGSAYLYRAFHAIRSLSTS-TGIPTNATFGFTRILLKLIKEKQPE----YVAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRN ++  YKANRP +P+ L  Q+P ++   +A  IP +E  GFEADD+I T
Sbjct: 57  FFDVKGPTFRNAMFDAYKANRPPMPDDLRLQIPYIKEVVKALNIPIVEKTGFEADDLIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           Y  +AE++GFAV +++ DKD MQLV+    ++D +KEE ID   +  K G+ P +++ + 
Sbjct: 117 YARLAEEKGFAVVMVTGDKDFMQLVTDNAVIWDPMKEEIIDKRAISDKLGLTPIQVIDML 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-RENILEYAETARL 242
            L GD+ DNIPG+PG+G KTA  L+ E+GN++ I  N   +K KK     + +  + A L
Sbjct: 177 GLAGDTADNIPGVPGVGPKTAQKLIAEHGNMKTIYDNLESLKSKKSLYAKLTDNRDQAFL 236

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           SR LV +  +V + IPL+  IL   +  RL    K LEFTKL
Sbjct: 237 SRDLVTIDRNVAVEIPLDEFILSPFDHGRLAEIFKELEFTKL 278


>gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4]
 gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4]
          Length = 868

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/530 (40%), Positives = 331/530 (62%), Gaps = 31/530 (5%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI--SMRGFEDIMLMSYVLDSGRSSHDI 505
           E+L    +  E +  L   ++ K     L  YG    M GF D++L +Y+++   +++++
Sbjct: 360 EVLKSFFRLLEEKGGLVSTYDAKSCLHALEPYGFKPEMIGF-DVLLAAYLVNPA-ANNEL 417

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            +IA     +     + S  + +P              E +  I QL  +L+ K+ +++ 
Sbjct: 418 GAIA-----FEHAGFMLSPGAELP--------------EKAQAIYQLTPILKSKIKLQEQ 458

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
            ++Y  ++ P+  V++ ME  G+++ ++ L+ +S E+ + L  L E IY L+GE+FNL+S
Sbjct: 459 EYLYYSVELPLAAVLADMEKVGVKVSEERLRSLSKELGEQLAQLSEEIYKLAGERFNLNS 518

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           P+QLG ILF KL      KTKTG + T A  LE++   ++ I+  +L +RQL+K+KSTY 
Sbjct: 519 PRQLGYILFEKLGLKPVKKTKTG-YSTDASVLEKL--AEHEIVAKVLVYRQLAKLKSTYT 575

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKK 744
           D+LP  I+  T R+HT +  A T TGRLAS EPNLQNIP++  LG++IR+AF++  P   
Sbjct: 576 DALPELIDPATGRLHTTFLQAGTATGRLASAEPNLQNIPVRDSLGRRIRQAFVAEGPDYV 635

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+SADYSQIELR+LAH+++   L + F    DIH   AAEIFGV+ ++V+P+MR  AK +
Sbjct: 636 LLSADYSQIELRVLAHLSEDPGLCEAFVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVV 695

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YG+S + L+ +L+I   EA +YI+RYF R+P + ++IE+     R+ GYV TI  
Sbjct: 696 NFGIVYGMSDYGLSQELKIEPGEAHEYIERYFRRYPRVKQFIERVIAQAREKGYVTTILN 755

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   + R + ER AIN  IQGSAAD+ ++AM+ +H+ L+      +M+LQ+
Sbjct: 756 RRRYIPEILSSNRNQRQLGERLAINTTIQGSAADLIKKAMVDIHRQLKGQGFKCRMILQV 815

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+FEVP+EE+   + II  +ME+A LP    +VP+K N+KV  NWQ+
Sbjct: 816 HDELLFEVPKEELEKVAPIIKSTMEQA-LP---FKVPIKANLKVGPNWQD 861



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/292 (39%), Positives = 168/292 (57%), Gaps = 17/292 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   L L+DGSS  YRAF+A P L R   GLP  A+ GF +ML+K+L+  R  +I +   
Sbjct: 2   KGKTLLLLDGSSIAYRAFFALPSL-RTRTGLPTGAVYGFTSMLFKVLEERRPTAIVA--- 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR+ +   YKA+RP  P+ L  Q  L++    A  +P +E +GFEADD+I 
Sbjct: 58  -AFDKSKTTFRHALAETYKAHRPATPDELRQQFNLIKEVLTALNVPVVEKEGFEADDLIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIK-KWGIPPEK 178
           T    AEKEG+   I++ D D +QLVSP T    +   + E  +  E  +K ++G+ P +
Sbjct: 117 TLVDRAEKEGWQCLIVTGDLDALQLVSPLTTVVLMRKGISEIAVFNEAEVKRRFGVTPRQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +   +AL GD+ DNIPG+PGIG KTA+ LLQ + +LE +L +   +   K RE +  + E
Sbjct: 177 LPDFKALAGDASDNIPGLPGIGPKTASRLLQSHQSLEKLLESKESLP-AKLRETLERHKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA---LEFTKLINR 287
            A L++KL ++R DV    PLE  I+    GP +++ L+    LEF  L  R
Sbjct: 236 EAVLAKKLALIRRDV----PLEEEIIRPWPGPNILATLEVFSRLEFRTLAKR 283


>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + D+A++A+ K     R +     K  K S+P     
Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + EH +  +  I   W L RP   +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 499 TKRLEQMGSELAEQLGAIEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A  LE++    + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR ++ +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A    + LRVPLKV+      W
Sbjct: 857 A----VELRVPLKVDYHYGPTW 874



 Score =  224 bits (571), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 187/327 (57%), Gaps = 15/327 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           Y + A LS++L  +R D P+ + L+ +I E  +  ++I+  K L F   + ++    D  
Sbjct: 235 YRDLALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290

Query: 296 AANIEPVVLDINTTENKGIAIETEIDR 322
            A  E  ++++      GI  E   D+
Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADK 317


>gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
 gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
          Length = 892

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/504 (42%), Positives = 325/504 (64%), Gaps = 16/504 (3%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-KSRKSSIPI 530
           L+R G+++     D++L+SY+LD+  +S+D+  +AQ+   Y   + ++I  K  K ++P 
Sbjct: 394 LNRLGVTLSKINFDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDEQIYGKGAKHAVPK 453

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           DK     + EH +     I  L   L  +L   + L +Y ++++P+  V++ MEI G+++
Sbjct: 454 DK---EVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIVLANMEIAGVKV 510

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D + L+ + +E+ + L  LE+ IY+ +GE+FNL+SPKQLG ILF KLK P   KTKTG +
Sbjct: 511 DSNRLETMQSELKERLSELEQEIYNEAGEEFNLNSPKQLGVILFEKLKLPVIKKTKTG-Y 569

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+  G +PI+ NIL++RQL+KI+STY + L   ++K+  + HT Y+   T T
Sbjct: 570 STAVGVLEQLR-GMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYTQTLTST 628

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+KIR+AF+ S P  ++ S+DYSQIELR+LAHI+K   + +
Sbjct: 629 GRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQE 688

Query: 770 VFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+  +DIH   A  IF V+  ++V+P MRR AK +NF I+YGIS + L+  + I R +A
Sbjct: 689 AFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQA 748

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I  Y   F G+ +Y+EK   F ++NGYVETIF RR +  +I S   ++R+  ER A+
Sbjct: 749 KQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAM 808

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI++ + L++  L  KMLLQ+HDEL+FE P EEI     ++   M
Sbjct: 809 NSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVM 868

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           + A    + L VPLKV  K    W
Sbjct: 869 DSA----VKLDVPLKVESKHGQTW 888



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 185/340 (54%), Gaps = 23/340 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           ++++N L L+DG+S  +RAF+A    LSR   H+GL  NAI GF NML  +L        
Sbjct: 2   VEEKNKLLLIDGNSVTFRAFFALHNSLSRFVNHEGLHTNAIYGFKNMLDSILTKVN---- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E + DYK  R K P  L  Q P ++   + +GI   E++ +EA
Sbjct: 58  PTHILVAFDAGKTTFRTEKFTDYKGGRAKTPSELSEQFPEIKNLLEGYGIKTYELKNYEA 117

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    AEK+ + V +++ D+DL QL +    +  TVK     E+    HV +K G
Sbjct: 118 DDIIGTLAAKAEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIG 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + PE++V ++AL GD+ DN PG+  IG KTA  LL++YG L+ I  N   +K+ K +EN+
Sbjct: 178 LIPEQIVDMKALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENL 237

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV--ATT 291
           +   E A L + L  +R D P+ I LE       +  +LI+  + L+F K ++++   ++
Sbjct: 238 IREKEIAYLCQDLAEIRKDAPVEIDLEETEWTGKDIEKLITLYQKLDFRKFLSQLKDESS 297

Query: 292 YDCD----AANIEPVVL------DINTTENKGIAIETEID 321
              D     +NIE   L      DIN ++N  I    EID
Sbjct: 298 EQLDIFESKSNIEFTELTEENLDDINVSDNDEIVFNLEID 337


>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
          Length = 878

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + D+A++A+ K     R +     K  K S+P     
Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + EH +  +  I   W L RP   +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A  LE++    + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR ++ +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A    + LRVPLKV+      W
Sbjct: 857 A----VELRVPLKVDYHYGPTW 874



 Score =  220 bits (561), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 127/327 (38%), Positives = 186/327 (56%), Gaps = 15/327 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           Y + A LS++L  +R   P+ + L+ +I E  +  ++I+  K L F   + ++    D  
Sbjct: 235 YRDLALLSKQLAAIRRYAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290

Query: 296 AANIEPVVLDINTTENKGIAIETEIDR 322
            A  E  ++++      GI  E   D+
Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADK 317


>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
 gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + D+A++A+ K     R +     K  K S+P     
Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + EH +  +  I   W L RP   +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A  LE++    + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR ++ +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A    + LRVPLKV+      W
Sbjct: 857 A----VELRVPLKVDYHYGPTW 874



 Score =  224 bits (571), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 187/327 (57%), Gaps = 15/327 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           Y + A LS++L  +R D P+ + L+ +I E  +  ++I+  K L F   + ++    D  
Sbjct: 235 YRDLALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290

Query: 296 AANIEPVVLDINTTENKGIAIETEIDR 322
            A  E  ++++      GI  E   D+
Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADK 317


>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
          Length = 878

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + D+A++A+ K     R +     K  K S+P     
Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + EH +  +  I   W L RP   +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A  LE++    + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR ++ +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A    + LRVPLKV+      W
Sbjct: 857 A----VELRVPLKVDYHYGPTW 874



 Score =  224 bits (571), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 187/327 (57%), Gaps = 15/327 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           Y + A LS++L  +R D P+ + L+ +I E  +  ++I+  K L F   + ++    D  
Sbjct: 235 YRDLALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290

Query: 296 AANIEPVVLDINTTENKGIAIETEIDR 322
            A  E  ++++      GI  E   D+
Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADK 317


>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
 gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
          Length = 878

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/498 (42%), Positives = 317/498 (63%), Gaps = 14/498 (2%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDKISDS 536
           G+ +RG + D+++ SY+L+  +S+ D+ASIA+  ++      E +  + +     K+ D 
Sbjct: 386 GVHLRGIQFDLLIASYLLNPSQSTEDVASIAKTKQYAGVQSDEAVYGKGAK---QKVPDE 442

Query: 537 QV-QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           QV  EH +  +  I  L       L   +   ++  L+ P+  ++++ME  G+++D + L
Sbjct: 443 QVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERL 502

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  E+++ L  +E+ IY L+G++FN++SPKQLG ILF KL+ P   KTKTG + T+A+
Sbjct: 503 KEMGEELAEQLKEVEQEIYRLAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YSTSAE 561

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    + I++ IL +RQL K++STY + L   +++ T +VHT ++ A T TGRL+S
Sbjct: 562 VLEKL-APQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSS 620

Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPI+ + G+KIR+AFI S P   + SADYSQIELR+LAHIA    L   F + 
Sbjct: 621 TEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHG 680

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIH   A +IF V+ E+V+P MRR AK +NF I+YGIS + L+  L I R EAA++IKR
Sbjct: 681 LDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIKR 740

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FPG+ +Y++      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 741 YFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQG 800

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI ++AMI + K L+   +  +MLLQ+HDEL+ E P++EI    QI+   ME A   
Sbjct: 801 SAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENA--- 857

Query: 955 KINLRVPLKVNIKVSNNW 972
            + LRVPLKV+      W
Sbjct: 858 -VQLRVPLKVDYHFGPTW 874



 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/288 (39%), Positives = 170/288 (59%), Gaps = 11/288 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L+  +     +H  V FD
Sbjct: 6   LVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLMKILEEEK----PTHMLVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + +YK  R K P  L  Q PL+R    A+ I   E++ +EADDII T   
Sbjct: 61  AGKTTFRHKTFEEYKGGRQKTPPELSEQFPLLRELLNAYQIRFYELENYEADDIIGTLCA 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181
            AE EGF V +IS D+DL QLVS    + D  K+   D+E      V +K+G+ P++++ 
Sbjct: 121 KAENEGFEVKVISGDRDLTQLVSDHVTV-DITKKGITDVESYTPETVREKYGLAPQQIID 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+PGIG KTA  LL+E+G++ENIL +  +I   K +EN+ ++ + A 
Sbjct: 180 LKGLMGDKSDNIPGVPGIGEKTALKLLKEFGSIENILDSIEQISGNKLKENLEKHRDLAL 239

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +S++L  +  D PI +  E +     +  ++I+  K L F  L++++A
Sbjct: 240 MSKQLATILRDAPIDLSFEDIEYRGYDVDKVIALFKELSFNSLLDKMA 287


>gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118]
 gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118]
          Length = 892

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/504 (42%), Positives = 325/504 (64%), Gaps = 16/504 (3%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-KSRKSSIPI 530
           L+R G+++     D++L+SY+LD+  +S+D+  +AQ+   Y   + ++I  K  K ++P 
Sbjct: 394 LNRLGVTLSKINFDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDEQIYGKGAKHAVPE 453

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           DK     + EH +     I  L   L  +L   + L +Y ++++P+  +++ MEI G+++
Sbjct: 454 DK---EVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIILANMEIAGVKV 510

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D + L+ + +E+ + L  LE+ IY+ +GE+FNL+SPKQLG ILF KLK P   KTKTG +
Sbjct: 511 DSNRLETMQSELKERLSELEQEIYNEAGEEFNLNSPKQLGVILFEKLKLPVIKKTKTG-Y 569

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+  G +PI+ NIL++RQL+KI+STY + L   ++K+  + HT Y+   T T
Sbjct: 570 STAVGVLEQLR-GMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYTQTLTST 628

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+KIR+AF+ S P  ++ S+DYSQIELR+LAHI+K   + +
Sbjct: 629 GRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQE 688

Query: 770 VFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+  +DIH   A  IF V+  ++V+P MRR AK +NF I+YGIS + L+  + I R +A
Sbjct: 689 AFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQA 748

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I  Y   F G+ +Y+EK   F ++NGYVETIF RR +  +I S   ++R+  ER A+
Sbjct: 749 KQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAM 808

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI++ + L++  L  KMLLQ+HDEL+FE P EEI     ++   M
Sbjct: 809 NSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVM 868

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           + A    + L VPLKV  K    W
Sbjct: 869 DSA----VKLDVPLKVESKHGQTW 888



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 183/340 (53%), Gaps = 23/340 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           ++++N L L+DG+S  +RAF+A    LSR   H+GL  NAI GF NML  +L        
Sbjct: 2   VEEKNKLLLIDGNSVTFRAFFALHNSLSRFVNHEGLHTNAIYGFKNMLDSILTKVN---- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E + DYK  R K P  L  Q P ++   + +GI   E++ +EA
Sbjct: 58  PTHILVAFDAGKTTFRTEKFTDYKGGRAKTPSELSEQFPEIKNLLEGYGIKTYELKNYEA 117

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    AEK+ + V +++ D+DL QL +    +  TVK     E+    HV +K G
Sbjct: 118 DDIIGTLAAKAEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIG 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + PE++V ++AL GD+ DN PG+  IG KTA  LL++YG L+ I  N   +K+ K +EN+
Sbjct: 178 LIPEQIVDMKALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENL 237

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN--RVATT 291
           +   E A L + L  +R D P+ I LE       N  +L++  + L+F K ++  +  ++
Sbjct: 238 IREKEIAYLCQDLAEIRKDAPVEIDLEETEWTGKNIEKLVTLYQKLDFRKFLSQLKAESS 297

Query: 292 YDCD----AANIEPVVL------DINTTENKGIAIETEID 321
              D     +NIE   L      DI  ++N  I    EID
Sbjct: 298 EQLDIFESKSNIEFTELTEENLNDIKISDNDEIVFNLEID 337


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/615 (35%), Positives = 361/615 (58%), Gaps = 28/615 (4%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-E 425
            Y  + +  + ++ ++KL    S +  + T ++D F    + I++S         FK  E
Sbjct: 297 GYRIVKDLVEFEKLIEKLRESPSFAIDLETSSLDPFDCDIVGISVS---------FKPKE 347

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484
             +I L    +Q     N   KE+L  LK+  E+     +G N+K+D  VL   G+  + 
Sbjct: 348 AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVP 402

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV-----Q 539
            + D M+ +Y+L+      ++  +A K+L Y      +    S P+   S + V      
Sbjct: 403 PYFDTMIAAYLLEPNEKKFNLDDLALKFLGYKMTSYQELMSFSFPLFGFSFADVPVEKAA 462

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            ++ E++++  +L+  L  KL    L +V+ +++ P+++V+++ME+ G+ +D + LK++S
Sbjct: 463 NYSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLS 522

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLE 658
            E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG + T  + LE
Sbjct: 523 EEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLE 582

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++  G++ II  ILE+R++ K+KSTY D+LP  +N +T R+H  ++   T TGRL+S +P
Sbjct: 583 EL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRLSSSDP 641

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE  +D+
Sbjct: 642 NLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDV 701

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H + A+ IF V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L +P  EA   I  YF 
Sbjct: 702 HTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMIVNYFV 761

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P + +YI++  +  ++ GYV T+FGR+    ++ +   + +   ER AIN PIQG+AA
Sbjct: 762 LYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPIQGTAA 821

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI + + L++ K+ +KM++Q+HDELVFEVP EE     +++   M       + 
Sbjct: 822 DIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVKDRMTNV----VK 877

Query: 958 LRVPLKVNIKVSNNW 972
           L VPL+V++ +   W
Sbjct: 878 LSVPLEVDVTIGKTW 892



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/261 (40%), Positives = 156/261 (59%), Gaps = 6/261 (2%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG++  YRA+YA         G+P NA  G   ML + +++        + AV F
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSTGIPTNATYGVARMLVRFIKDHIIVG-KDYVAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++   YKA RPK P++L+ QLP ++   +A G+  +E++G+EADDIIAT  
Sbjct: 62  DKKAATFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                    + I++ DKD++QLV+    ++  VK     E  D + V +K+G+ P+++  
Sbjct: 122 VKGLPLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPQQIPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L ALTGD IDNIPG+ GIG KTA  LL++Y +LE+IL +   + QK R+  +L   E A 
Sbjct: 182 LLALTGDEIDNIPGVTGIGEKTAVQLLEKYKDLEDILNHVRELPQKVRK-ALLRDRENAI 240

Query: 242 LSRKLVMLRTDVPITIPLEHL 262
           LS+KL +L T+VPI I  E L
Sbjct: 241 LSKKLAILETNVPIEINWEEL 261


>gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378]
          Length = 552

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/552 (41%), Positives = 329/552 (59%), Gaps = 19/552 (3%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           FI L+VH+SQ +      T E     + + E++   K+ ++ K   + ++R G +++G  
Sbjct: 9   FIGLTVHSSQGTYFFTKETAEKSVVFRNWVESDE-TKVVYDAKKTMVAMNRIGFAIKGVT 67

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541
            DIML SY+L+   S  D  S+A +   YT  E       K  K S P + I    V  H
Sbjct: 68  FDIMLASYLLNPSDSIDDFTSVAVRH-DYTEVETDEAIYGKGAKRSTPEENI----VAAH 122

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +  I +L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ +  E
Sbjct: 123 LARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLENMKVE 182

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG + T A  LE + 
Sbjct: 183 LAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL- 240

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQ
Sbjct: 241 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 300

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH  
Sbjct: 301 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 360

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  +P
Sbjct: 361 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYP 420

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI 
Sbjct: 421 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 480

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI + + L+   L  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L V
Sbjct: 481 KKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 536

Query: 961 PLKVNIKVSNNW 972
           PLKV+    + W
Sbjct: 537 PLKVDSAFGDTW 548


>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
 gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
          Length = 893

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/619 (35%), Positives = 368/619 (59%), Gaps = 36/619 (5%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  + + K  +  ++KL+ + S +  + T ++D F+ + + I++S         FK +T
Sbjct: 297 GYEIVKDHKTFEDLIEKLKEVPSFALDLETSSLDPFNCEIVGISVS---------FKPKT 347

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRG 485
            +  + +H         TL   +LS LK+  E+     +G N+KYD  VL   GIS +  
Sbjct: 348 AYY-IPLHHRNAQNLDETL---VLSKLKEILEDPSSKIVGQNLKYDYKVLMVKGISPVYP 403

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKS--------SIPIDKISD 535
             D M+ +Y+L+      ++  ++ K+L Y  T  + L S  S         +P+DK ++
Sbjct: 404 HFDTMIAAYLLEPNEKKFNLEDLSLKFLGYKMTSYQELMSFSSPLFGFSFADVPVDKAAN 463

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                ++ E++++  +L+ +L  KL   +L +V+ R++ P+++V+++ME+ G+ +D + L
Sbjct: 464 -----YSCEDADITYRLYKILSMKLHEAELENVFYRIEMPLVNVLARMELNGVYVDTEFL 518

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTA 654
           K++S E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG++ T  
Sbjct: 519 KKLSEEYGKKLEELAEKIYQIAGEPFNINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRI 578

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE+I   ++ I+  ILE+R++ K+KSTY D+LP  +N +T R+H  +    T TGRL+
Sbjct: 579 EVLEEI-ANEHEIVPLILEYRKIQKLKSTYIDTLPKLVNPKTGRIHASFHQTGTATGRLS 637

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE 
Sbjct: 638 SSDPNLQNLPTKSEEGKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGDENLVKAFEE 697

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +D+H + A+ I+ V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L IP  EA   I 
Sbjct: 698 GIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTPYGLSVRLGIPVKEAEKMII 757

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P +  YI++     ++ GYV T+FGR+    ++ +   + ++  ER AIN PIQ
Sbjct: 758 SYFTLYPKVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKNTQSEGERIAINTPIQ 817

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI + + L    + ++M++Q+HDELVFEVP+EE      ++ + M     
Sbjct: 818 GTAADIIKLAMIDIDEELRKRNMKSRMIIQVHDELVFEVPDEEKEELVDLVKNKMTNV-- 875

Query: 954 PKINLRVPLKVNIKVSNNW 972
             + L VPL+V+I +  +W
Sbjct: 876 --VKLSVPLEVDISIGKSW 892



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/313 (37%), Positives = 175/313 (55%), Gaps = 13/313 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI---ASHFA 62
            LFL DG++  YRA+YA         G+P NA+ G   ML K +    KE I     + A
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSTGIPTNAVYGVARMLVKFI----KEHIIPEKDYAA 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD  A TFR+++   YKA RPK P++L+ QLP ++   +A G   +E++G+EADDIIA
Sbjct: 59  VAFDKKAATFRHKLLEAYKAQRPKTPDLLVQQLPYIKRLIEALGFKVLELEGYEADDIIA 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T           + II+ DKD++QLV+    ++  VK     E  D + V +++G+ P +
Sbjct: 119 TLAVKGCTFFDEIFIITGDKDMLQLVNEKIKVWRIVKGISDLELYDSKKVKERYGVEPHQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  L ALTGD IDNIPG+ GIG KTA  LL +Y NLE+IL +A  + Q+ R+  +L   E
Sbjct: 179 IPDLLALTGDEIDNIPGVTGIGEKTAVQLLGKYRNLEDILEHARELPQRVRK-ALLRDRE 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS+KL  L T+ P+ +  E +     +  +L+  LK LEF  ++  +    + +   
Sbjct: 238 VAILSKKLATLVTNAPVEVDWEEMKYRGYDKRKLLPILKELEFASIMKELQLYEEAEPTG 297

Query: 299 IEPVVLDINTTEN 311
            E +V D  T E+
Sbjct: 298 YE-IVKDHKTFED 309


>gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
 gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
          Length = 872

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/503 (40%), Positives = 314/503 (62%), Gaps = 37/503 (7%)

Query: 476 LHRY----GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
           L++Y    G +++G  +D  L  Y+ + G S + I ++ +++L     E  +   + +P+
Sbjct: 397 LYKYMMGQGKNLQGITDDPALAGYLYEPGASGYGIQALGEEFLPAASGEGAQDTAALVPV 456

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                                    LR KL    L  +YE ++ P+ + +++ME TGI +
Sbjct: 457 -------------------------LREKLEERGLTRLYEDIELPLTENLAEMEFTGIAV 491

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           DQ +L +V+ E++K + +LE+  +D +GE+FNL+SPKQLG +LF KL  P   KTKTG +
Sbjct: 492 DQAMLDEVTGEMTKKVQALEQQAWDQAGEQFNLNSPKQLGVLLFEKLGLPIIKKTKTG-Y 550

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LE +  G++P+I+ ++ +RQLSK+ STY   L   IN  T R+HT ++  +T+T
Sbjct: 551 STDVSVLEALQ-GEHPLIETLISYRQLSKLLSTYLLGLHPLINPATGRIHTHFNQMATVT 609

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQ 769
           GRL+S EPNLQNIP +T++G+++R  F+      L+ S DYSQ+ELR++A IA+   L  
Sbjct: 610 GRLSSTEPNLQNIPTRTEVGKRMREMFVPGEGYDLLMSCDYSQVELRVMASIAQDELLLD 669

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  D+H   A+EIFGV +++V+P MR  AKT+NF IIYGIS F LA QL +PR EAA
Sbjct: 670 SFRHGQDVHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIYGISDFGLARQLGVPRGEAA 729

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI+ YF R+ G+  Y+E+ K   R+ GYVET+FGRR +  +IN+   + R+  ER AIN
Sbjct: 730 QYIESYFARYTGVKAYMEREKQKAREMGYVETLFGRRRYLPDINAKNFNRRSFAERTAIN 789

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AADI + AM+ V ++L++ ++ +++LLQ+HDELV E+P  E  T  +I+  +ME
Sbjct: 790 TPIQGTAADIIKVAMLKVARNLKEARVKSRVLLQVHDELVLEIPAAEQETVGKIVKETME 849

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
            A    ++L VPL  ++ V  NW
Sbjct: 850 HA----VDLAVPLVADVAVGKNW 868



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 162/314 (51%), Gaps = 24/314 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +    L+DGSS I+RAF+A P L+ K +G+   A+ G CNM+ KLLQ    E   S+  V
Sbjct: 2   DEKFLLIDGSSLIHRAFFALPPLTNK-NGVNTGAVYGLCNMILKLLQ----EIQPSYMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E +P+YK  R   P  L  Q PL     Q+ GIP +E+  +EADDII T
Sbjct: 57  AFDKSRKTFRTEKFPEYKGQRKATPPELKEQFPLSIQLLQSMGIPTLEVDNYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT--------VKEEKIDIEHVIKKWGIP 175
            +  A  E   V I++ D+D  QL+     +  T        V +EK   E      G+ 
Sbjct: 117 LSSGA-PENVQVRIVTGDRDEFQLIKGNVQVLFTKKGISNIAVYDEKAFGEEY---QGLQ 172

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ L+ L GD+ DNIPG+PG+G KTA  L+ EY  +EN+L +A  +K K  +E +  
Sbjct: 173 PRQIIDLKGLMGDTSDNIPGVPGVGPKTALKLITEYRTVENVLDHAEEVKGKALKEKLRN 232

Query: 236 YAETARLSRKLVMLRTDVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
             E A LS+ L  +   VPI   P  +++       R    ++ L+F  L +R      C
Sbjct: 233 NREQALLSKDLATICLQVPIDRDPGAYVLTGLTEESR--QLMQELQFKNLWDRFVPVLGC 290

Query: 295 ----DAANIEPVVL 304
               DA + +P+ L
Sbjct: 291 AAGTDAGSSDPLSL 304


>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
 gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
          Length = 892

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/621 (35%), Positives = 364/621 (58%), Gaps = 33/621 (5%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKII---TDTMDAFHSKPIAIAISTLDQKDDTSF 422
           D  T  +  KD     +  E I  + + ++   TD++    ++ I  +IS   +      
Sbjct: 292 DQKTPYIAVKDNNSLNELFEKIKKSQYFVLDLETDSLSPIDAEIIGFSISLPSK------ 345

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
             E+ ++ L+        G N   K  L+ LK   EN+    IG N+KYD  VL  +GI 
Sbjct: 346 --ESYYVPLA-----HKNGPNVDKKSALNNLKSILENQSAKIIGQNLKYDYSVLKMHGIE 398

Query: 483 -MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRK---SSIPIDKISD 535
            +R   D M+ +Y+L+      ++  +A K+L+Y   + +E+ K       ++    +S 
Sbjct: 399 PVRPSFDTMIAAYLLNPDEKRFNLDELAMKFLNYKMISFEELFKDTSPLFGAVTFADVSV 458

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +++ E++++  +L+ +L  KL    LL V E+++ P+I V+  ME+ G+ ++ D L
Sbjct: 459 EDATKYSAEDADITRRLYEILNIKLHEADLLEVLEKIEMPLIPVLVHMELEGVYMNIDYL 518

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K +S++ +  +  L + IY+ +GE FNL+SPKQ+  ILF KLK     KT TG+  T A 
Sbjct: 519 KDLSSKYAARMNELSQQIYNHAGEAFNLNSPKQVAHILFDKLKIQPTKKTSTGEPSTRAD 578

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   ++PI++ ILE+R+  KIKSTY D LP  ++  T R+H+ +    T TGRL+S
Sbjct: 579 VLEEL-SEEHPIVRLILEYRKYQKIKSTYLDVLPKLVHPETGRIHSSFHQTGTATGRLSS 637

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK---KLISADYSQIELRILAHIAKITPLYQVFE 772
            +PNLQN+P K +  ++IR+A +  P +   K++SADYSQIELR+LAH++    L + F+
Sbjct: 638 SDPNLQNLPSKQEESREIRKAVV--PQRDSWKILSADYSQIELRVLAHLSNDQNLIEAFK 695

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   ++ IF V   +V+PQMR   K +NFS+IYG+SP+ L+ +  +   +A  +I
Sbjct: 696 KDEDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSPYGLSQRTGLSYDQAQKFI 755

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + EY  K  ++ + +GYV T+FGRR    ++ S  +S+R   ER AIN PI
Sbjct: 756 GEYFSLYPSVKEYFAKIVSYAKTHGYVRTMFGRRREVPQLRSKNASVRQEGERIAINTPI 815

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI+++  ++  +L +KM+LQ+HDELVFEVP+EE+     ++  SME   
Sbjct: 816 QGTAADIMKLAMINLYDKIKQMRLQSKMILQVHDELVFEVPDEEVEIVKNLVRDSMENV- 874

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
              + L VPLKV++K+S++W+
Sbjct: 875 ---VRLSVPLKVDLKISDSWE 892



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 164/291 (56%), Gaps = 16/291 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LFL DG+   YRA+YA         G+P NA  G   ML + L++  K  I  + A   D
Sbjct: 4   LFLFDGTGLAYRAYYALDQSLSTTSGIPTNATYGVLRMLIRFLKDYVK--IGDYTAFAMD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T+R+E+  +YKA+RP+ P+ ++ QLP ++   QA GI  +E +G EADD+IAT   
Sbjct: 62  TKTRTYRHELLEEYKAHRPQTPDAMIQQLPYIKRGVQALGIKVLEYEGCEADDVIATLAR 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           + EKE   + IIS DKD+ QLV+       P+  + D    E  D + +I+K+ + P K+
Sbjct: 122 MGEKEFEDIFIISGDKDMFQLVNDKIKVWRPSKGITDL---EFYDKKKIIEKYRVEPSKI 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-E 238
           V L AL GDS+DN+PG+ GIG KTAA L++++GNL+ I     +I +  R   +L    +
Sbjct: 179 VDLLALMGDSVDNVPGVKGIGMKTAAELIEKFGNLDEIY---GKIDENSRIGKLLSRGKD 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            A  S++LV L TD+ + +  + L         L+ FL+ +EF+ ++  + 
Sbjct: 236 DAFKSKQLVTLMTDLDLRLTWDDLKYAGYKEKELVEFLREMEFSSIMKELG 286


>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/502 (41%), Positives = 321/502 (63%), Gaps = 22/502 (4%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + D+A++A+ K     R +     K  K S+P     
Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + EH +  +  I   W L RP   +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 499 TKRLEQMGSELAEQLGAIEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A  LE++    + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHAKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A    + LRVPLKV+      W
Sbjct: 857 A----VELRVPLKVDYHYGPTW 874



 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 187/327 (57%), Gaps = 15/327 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRSKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           Y + A LS++L  +R D P+ + L+ +I E  +  ++I+  K L F   + ++    D  
Sbjct: 235 YRDLALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290

Query: 296 AANIEPVVLDINTTENKGIAIETEIDR 322
            A  E  ++++      GI  E   D+
Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADK 317


>gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
          Length = 892

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/504 (42%), Positives = 325/504 (64%), Gaps = 16/504 (3%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-KSRKSSIPI 530
           L+R G+++     D++L+SY+LD+  +S+D+  +AQ+   Y   + ++I  K  K ++P 
Sbjct: 394 LNRLGVTLSKINFDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDEQIYGKGAKHAVPK 453

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           DK     + EH +     I  L   L  +L   + L +Y ++++P+  V++ MEI G+++
Sbjct: 454 DK---EVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIVLANMEIAGVKV 510

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D + L+ + +E+ + L  LE+ IY+ +GE+FNL+SPKQLG ILF KLK P   KTKTG +
Sbjct: 511 DSNRLETMQSELKERLSELEQEIYNEAGEEFNLNSPKQLGVILFEKLKLPVIKKTKTG-Y 569

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+  G +PI+ NIL++RQL+KI+STY + L   ++K+  + HT Y+   T T
Sbjct: 570 STAVGVLEQLR-GMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYTQTLTST 628

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+KIR+AF+ S P  ++ S+DYSQIELR+LAHI+K   + +
Sbjct: 629 GRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQE 688

Query: 770 VFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+  +DIH   A  IF V+  ++V+P MRR AK +NF I+YGIS + L+  + I R +A
Sbjct: 689 AFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQA 748

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I  Y   F G+ +Y+EK   F ++NGYVETIF RR +  +I S   ++R+  ER A+
Sbjct: 749 KQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAM 808

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI++ + L++  L  KMLLQ+HDEL+FE P +EI     ++   M
Sbjct: 809 NSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDELIFEAPTKEIPLLEDMVPKVM 868

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           + A    + L VPLKV  K    W
Sbjct: 869 DSA----VKLDVPLKVESKHGQTW 888



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 183/340 (53%), Gaps = 23/340 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           ++++N L L+DG+S  +RAF+A    LSR   H+GL  NAI GF NML  +L        
Sbjct: 2   VEEKNKLLLIDGNSVTFRAFFALHNSLSRFVNHEGLHTNAIYGFKNMLDSILTKVN---- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E + DYK  R K P  L  Q P ++   + + I   E++ +EA
Sbjct: 58  PTHILVAFDAGKTTFRTEKFTDYKGGRAKTPSELSEQFPEIKNLLEGYRIKTYELKNYEA 117

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    AEK+ + V +++ D+DL QL +    +  TVK     E+    HV +K G
Sbjct: 118 DDIIGTLAAKAEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIG 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + PE++V ++AL GD+ DN PG+  IG KTA  LL++YG L+ I  N   +K+ K +EN+
Sbjct: 178 LIPEQIVDMKALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENL 237

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN--RVATT 291
           +   E A L + L  +R D P+ I LE       N  +L++  + L+F K ++  +  ++
Sbjct: 238 IREKEIAYLCQDLAEIRKDAPVEIDLEETEWTGKNIEKLVTLYQKLDFRKFLSQLKAESS 297

Query: 292 YDCD----AANIEPVVL------DINTTENKGIAIETEID 321
              D     +NIE   L      DIN ++N  I    EID
Sbjct: 298 EQLDIFESKSNIEFTELTEENLDDINVSDNDEIVFNLEID 337


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/601 (38%), Positives = 351/601 (58%), Gaps = 26/601 (4%)

Query: 378 QQWVQKLETIGSASFKII---TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH 434
           +Q     E +  AS   +   TD++D   ++ + +++ T   +D  ++ +     D    
Sbjct: 300 EQLAALAERLAGASLVAVDTETDSLDPLKARLVGVSLCT---EDGEAWYLPCGHRD---E 353

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH---RYGISMRG-FEDIM 490
             +   G+  L + ++ +L+   E+    KIGHN+K+D  VL      GI +     D M
Sbjct: 354 AGELVAGQLPLDR-LIEFLRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPLHDTM 412

Query: 491 LMSYVLDSGRSSHDI----ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           + +++L   R ++ +      I  +  SY  +E+  + KS     ++     + ++ E+ 
Sbjct: 413 IGAWLLAPDRRTYKLDDLCGEINLRMTSY--EEVTHADKSEDAFCRVPLEAAKNYSCEDV 470

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
              L+L+    P+L    LL +   ++ P++ V++ ME  GI++D D L ++SAE  + L
Sbjct: 471 YGALRLYQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSAEFDRRL 530

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
            + E +IY  +G  FN++SPKQLG++LF KL+ P G KTKTG W T  + LE ++  D+ 
Sbjct: 531 RTDELSIYQAAGMSFNINSPKQLGEVLFEKLQLPKGRKTKTG-WSTDVKVLENLSF-DHE 588

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +   IL++R L+K+KSTY D L +  N RT RVHT ++   T TGRL+S  PNLQNIPI+
Sbjct: 589 LPALILQYRNLAKLKSTYVDKLASLRNPRTGRVHTSFNQCGTATGRLSSSSPNLQNIPIR 648

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           T+ G++IR AFI+     L++ADYSQI+LR+LAH ++   L   F+   DIHR  AAEIF
Sbjct: 649 TEEGRRIRSAFIAADGCLLLAADYSQIDLRVLAHYSQDRELIAAFQGGQDIHRRTAAEIF 708

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
            V+ E V+ +MRR AKTINF I+YG+S F L++QL + R +A  +I RYF  F GI +++
Sbjct: 709 NVSPELVTAEMRRVAKTINFGIVYGMSSFGLSSQLHVSRKDAQLFIDRYFAHFSGIKDFM 768

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
             T    +++G+V T+ GRR    EINS     R   ER AIN PIQG+AADI + AM+ 
Sbjct: 769 ASTIQQAKKDGFVTTLLGRRRPLAEINSANRVQREFAERTAINTPIQGTAADIIKLAMLR 828

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           +H+ L       +MLLQIHDELV EVPE E+   S+++  SME A    + LRVPL V +
Sbjct: 829 IHRELLRRDFRARMLLQIHDELVLEVPETELDPVSRLLKDSMESA----MPLRVPLVVQL 884

Query: 967 K 967
           +
Sbjct: 885 R 885



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 153/245 (62%), Gaps = 5/245 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS++IYRA++A   LS  H GLP +AI GF  +L +L+    KE    + AV FD
Sbjct: 6   LYLIDGSAYIYRAYHAIKPLSNSH-GLPTHAIFGFTAILRRLI----KERNPRYLAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ +Y  YKANRP +PE L+PQ+P +R    A+ I  +E +  EADD+IA+   
Sbjct: 61  TKGPVFRHRLYGQYKANRPPMPEDLIPQIPYIRKMVAAYRILNLEHEDQEADDLIASVAK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
               +G+ V I+S DKDL+QLVSP   L+D + +  +D   V +K+G+PP  ++   ALT
Sbjct: 121 KMAGQGYRVVIVSGDKDLLQLVSPGITLWDPMNDRVMDEAAVEEKYGLPPSLLLDYFALT 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPG+PG+G K+A  L+ E+ +LE +    + +K  K  + I +  + A LSR+L
Sbjct: 181 GDSSDNIPGVPGVGPKSAQKLIAEHRSLEGLYAVVASLKPSKIIQQIRDNRDAAFLSREL 240

Query: 247 VMLRT 251
           V L T
Sbjct: 241 VRLNT 245


>gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70]
 gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70]
          Length = 878

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/499 (42%), Positives = 316/499 (63%), Gaps = 16/499 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKIS 534
           GI +RG + D+++ SY+L+  +S+ D+ASIA+  ++      E +  K  K  IP + + 
Sbjct: 386 GIQLRGVQFDLLIASYLLNPSQSTEDVASIAKTKQYTDVQSDEAIYGKGAKQKIPDEPV- 444

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + EH +  +  I  L       L   +   ++  L+ P+  ++++ME TG++ID   
Sbjct: 445 ---LAEHLVRKAAAIRALEQDFICDLQENEQYSLFTDLELPLSSILAEMEFTGVKIDVKR 501

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK++  E+++ L  +E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + T+A
Sbjct: 502 LKEMGEELTEQLKEIEQEIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YSTSA 560

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE++    + I++ IL +RQL K++STY + L   ++  T +VHT ++ A T TGRL+
Sbjct: 561 EVLEKL-APQHEIVEKILHYRQLGKLQSTYIEGLLKVVHHDTNKVHTIFNQALTQTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIPI+ + G+KIR+AF+ S P   + SADYSQIELR+LAHIA    L   F +
Sbjct: 620 STEPNLQNIPIRLEEGRKIRQAFVPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRH 679

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IF VN ++V+P MRR AK +NF I+YGIS + L+  L I R EA+++IK
Sbjct: 680 DLDIHTKTAMDIFHVNEDEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNITRKEASEFIK 739

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+ +Y++      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 740 RYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQ 799

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   L+   +  +MLLQ+HDEL+ E P+EE+    QI+   ME A  
Sbjct: 800 GSAADIIKKAMIDLSNRLKKENMKARMLLQVHDELILEAPKEEVERLQQIVPEVMENA-- 857

Query: 954 PKINLRVPLKVNIKVSNNW 972
             + LRVPLKV+      W
Sbjct: 858 --VQLRVPLKVDYHFGPTW 874



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/289 (39%), Positives = 169/289 (58%), Gaps = 11/289 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L+  +     +H  V FD
Sbjct: 5   LVLIDGNSIAYRAFFALPLL-HNDKGIHTNAVYGFTMMLMKILEEEK----PTHMLVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + +YK  R + P  L  Q PL+R    A+ I   E++ +EADDII T   
Sbjct: 60  AGKTTFRHKTFEEYKGGRQQTPPELSEQFPLLRELLDAYRIRFYELENYEADDIIGTLCT 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181
            AEKEGF V +IS D+DL QL S    + D  K+   D+E      V +K+G+ PE+++ 
Sbjct: 120 KAEKEGFEVKVISGDRDLTQLASDHVTV-DITKKGITDVESYTPETVQEKYGLTPEQIID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+PGIG KTA  LL+E+G +ENIL +  ++   K REN+ +Y + A 
Sbjct: 179 LKGLMGDKSDNIPGVPGIGEKTALKLLKEFGTIENILDSIEQVSGNKLRENLAKYRDIAL 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +S++L  +  D P+ + LE +     +  ++I+  K L F  L+ ++A 
Sbjct: 239 MSKQLATILRDAPVDLSLEDIEYNGYDVDKVIALFKELGFNSLLEKMAA 287


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
          Length = 880

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/567 (40%), Positives = 340/567 (59%), Gaps = 43/567 (7%)

Query: 429 IDLSVHTSQDSTGKNTLTKEIL---------SY----------LKKFFENEHFLKIGHNI 469
           I  S+  ++DS  +N    EIL         SY          LK+  E+E   K+  N 
Sbjct: 326 IAFSLKIAKDSCARNGKITEILYAFQDESVYSYKTENNKIADALKEILESETIEKLFINA 385

Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           K   L L   GI ++    + +L  Y+L    S  D+  I  + L    +E         
Sbjct: 386 KESSLALLCAGIEVKNISFEPLLAYYLLQPSSSLPDLEEIFSRELDIGMQEF-------- 437

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                  SQ Q  A+E    + +L  +L  KL  + L  +++ ++ P+I V++QME  G+
Sbjct: 438 -------SQDQILAVETIK-LFKLRDILIKKLKDDSLYDLFKNMELPLIKVLAQMEYNGV 489

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID+D L+Q+S ++ K L  + +  ++L+GE FNL+SPKQLG+ILF KL  P   +TKTG
Sbjct: 490 KIDKDWLQQLSDKLEKRLEIITKKAHELAGEDFNLNSPKQLGEILFEKLGLPVIKRTKTG 549

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T A  LE++  G +PII  I E+R+L+K+KSTY DSLP  IN  T ++HT ++   T
Sbjct: 550 -YSTNANVLEKLE-GKHPIIPLISEYRELAKLKSTYIDSLPPLINSETGKIHTSFNQMVT 607

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ G++IR+AFI S     L++ DYSQIELR+ AH++    L
Sbjct: 608 ATGRLSSTNPNLQNIPIRTEEGREIRKAFIPSSDNMILLAVDYSQIELRVFAHLSGDKRL 667

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F +  DIH   A+EIF V  E+VSP +RRHAK INF + YG+S + L+  L IP  E
Sbjct: 668 KEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVINFGLAYGMSAYGLSQDLDIPVEE 727

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A DYI +YF RF G+ +Y+++T   V++ GY ET++GR+ +  EINS     R+  ER+A
Sbjct: 728 AQDYIDKYFERFSGVKKYMDETIQKVKEKGYAETLYGRKRYIPEINSSNYHRRSFAERSA 787

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           IN P+QG+AADI +++M+ V+ SL+D  L   +LLQ+HDELVFEV  +++  A+ +I   
Sbjct: 788 INTPVQGTAADIMKKSMLDVYDSLKDIDLEINILLQVHDELVFEVANKDLEKAALLIKDK 847

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A      L VPL V+++++ NW++
Sbjct: 848 MEAAA----ELDVPLLVDLQIAENWRD 870



 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 192/342 (56%), Gaps = 21/342 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LFL+DG S  +RAFYA PLL+   DG   NA+ GF  ML+ L      E       V FD
Sbjct: 12  LFLLDGHSITHRAFYALPLLTN-DDGQYTNAVFGFIRMLFSLTD----EWNPDRMIVTFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E Y +YKANR K+PE L+PQ+ L++       IP I  +G+EADD++ T + 
Sbjct: 67  KKAPTFRHEEYEEYKANRKKMPEELVPQISLLQQTLAKLEIPIIAEEGYEADDLLGTLSK 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMVCL 182
            A  + + V II+ D+D +QLVS    +  T K        D+E +  K+ IPPEK++ +
Sbjct: 127 QAAAQNYDVYIITGDRDALQLVSENIKVMYTRKGLSDLVIYDLEKIFDKYEIPPEKLIDM 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GDS DNIPG+PGIG KTA  LL+++ +++ IL N  ++  KKR+EN+ ++ + A++
Sbjct: 187 KGLMGDSSDNIPGVPGIGEKTAIKLLKQFDSIDEILNNIDQVSGKKRKENLKKFTDQAKM 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S +L  ++ DVP+ +  +   L+  +  +++   K L F+ L++R     +    NI   
Sbjct: 247 SYRLAKIKRDVPLKLDFDKCRLDLYDDGQVVEHFKKLGFSSLLDRFEYKKEIQPENIN-- 304

Query: 303 VLDINTT----------ENKGIAIETEIDRDTTIKTSQFSSL 334
            L++  T          E K IA   +I +D+  +  + + +
Sbjct: 305 FLNVGETELEELKQKALEYKEIAFSLKIAKDSCARNGKITEI 346


>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
          Length = 876

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/502 (42%), Positives = 321/502 (63%), Gaps = 22/502 (4%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + D+A++A+ K     R +     K  K S+P     
Sbjct: 384 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 439

Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + EH +  +  I   W L RP   +L   +   +  +L++P+  ++++ME TGI++D
Sbjct: 440 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVD 496

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 497 TKRLEQMGSELAEQLRAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 555

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A  LE++    + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 556 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQALTQTG 614

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 615 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEA 674

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 675 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 734

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 735 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 794

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 795 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 854

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A    + LRVPLKV+      W
Sbjct: 855 A----VALRVPLKVDYHYGPTW 872



 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/323 (39%), Positives = 185/323 (57%), Gaps = 15/323 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H  V 
Sbjct: 3   NKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKILAEER----PTHLLVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDII T 
Sbjct: 58  FDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKM 179
              AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ PE+M
Sbjct: 118 AARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLTPEQM 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +Y + 
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +R D P+ + L+ +I E  +  ++I+  K L F   + ++    D   A  
Sbjct: 237 ALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAPTAED 292

Query: 300 EPVVLDINTTENKGIAIETEIDR 322
           E  ++++      GI  E   D+
Sbjct: 293 ETPLMEMEFVIADGITDEMLADK 315


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/531 (40%), Positives = 331/531 (62%), Gaps = 15/531 (2%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG--FEDIMLMSYVLDSGRSSHDIAS 507
           ++  +  FE++    IG NIKYD  VL  YGI ++   F+ ++    ++   R + DI  
Sbjct: 415 INAFRSLFEDDTKTLIGQNIKYDFQVLKNYGIEIKNKLFDTMVAHFLIMPEMRHNMDI-- 472

Query: 508 IAQKWLSYT----RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           +AQ +L+Y+       I K  K    +  +   +++E+A E+++V  QL     PKLI  
Sbjct: 473 LAQTYLNYSPVSIETLIGKKGKEQTSMRDVEIEKIKEYAAEDADVTFQLKTAFAPKLIEN 532

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           ++  ++  ++ P+I V++ +E  GI +D   LK+ S ++  +++ +E+ I D +G KFN+
Sbjct: 533 EVEKLFTEVEVPLIKVLANIEREGINLDVPALKEFSGQLQNDIIIVEKEIQDFAGTKFNV 592

Query: 624 SSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           SSPKQ+G+ILF  LK      KTKTGQ+ T    L ++    +PI+  IL++R+L K+K+
Sbjct: 593 SSPKQVGEILFDYLKIVDKPKKTKTGQYATGEDVLSKLENA-HPIVSKILDYRELVKLKN 651

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  +N++T+R+HT ++    +TGRL+S  PNLQNIPI+T+ G++IR+AFI   +
Sbjct: 652 TYVDTLPELVNEKTKRIHTSFNQVVAVTGRLSSDNPNLQNIPIRTERGRQIRKAFIPRDS 711

Query: 743 KK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+SADYSQIELRI+A I+    + + F+   DIH   AA++FGV    V+ +MR  +
Sbjct: 712 DHVLLSADYSQIELRIVASISGDKNMCEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKS 771

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K++NF IIYG   F L+  L I R+EA + I  YF  +  I  Y+++T NF R+NGYV+T
Sbjct: 772 KSVNFGIIYGQGAFGLSENLNISRTEAKELIDNYFKEYGAIKSYMDRTINFARENGYVKT 831

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           + GR+    +I S  +++R+  ER AINAPIQGSAAD+ + AMI+++  LE     TKML
Sbjct: 832 LLGRKRWLRDITSANATVRSYAERNAINAPIQGSAADMIKVAMINIYNELEKQNFKTKML 891

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDELVF+V + E+     II   M +A LP   L VP++V +   +NW
Sbjct: 892 LQVHDELVFDVYKPELEKVKPIIEKLMREA-LP---LDVPVEVGLGTGDNW 938



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 164/295 (55%), Gaps = 15/295 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           Q +  LFL+D  + IYRA++A    P ++ K  G   +AI GF N L ++L   +     
Sbjct: 5   QTDKKLFLLDAFALIYRAYFAFSSNPRINSK--GFNTSAIFGFTNTLLEILTKEK----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           SH AV+FD    T R+  +  YKANR ++PE L   +P++    + F I  + ++G+EAD
Sbjct: 59  SHIAVVFDMEGPTQRHIEFETYKANREEMPEDLRKSIPIIIEMIKGFNIEVLGLEGYEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGI 174
           D+I T    AEK GF   +++ DKD  QLV   T +Y   +     E +  E + KKW I
Sbjct: 119 DVIGTLAIKAEKAGFTTYMMTPDKDYGQLVDENTFIYKPARLGNGAEILGTEEICKKWEI 178

Query: 175 PP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
               +++ +  L GD +DNIPGIPG+G KTA  L++++G++EN+L N  ++K  K +E +
Sbjct: 179 RNVAELIDILGLMGDKVDNIPGIPGVGEKTAIQLIKDFGSIENLLENTDKLK-GKLKEKV 237

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
               E A  S++L  +  D PI +  E L + + N P L+   + LEF  +  +V
Sbjct: 238 ENNKEMAIQSKRLATIILDCPIELDEEKLTIREPNKPLLLEVFRELEFRAIAQKV 292


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/615 (35%), Positives = 365/615 (59%), Gaps = 28/615 (4%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-E 425
            Y  + +  + ++ ++KL    S +  + T ++D F    + I++S         FK  E
Sbjct: 297 GYRIVKDLVEFEKLIEKLRESPSFAIDLETSSLDPFDCDIVGISVS---------FKPKE 347

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484
             +I L    +Q     N   KE+L  LK+  E+     +G N+K+D  VL   G+  + 
Sbjct: 348 AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVP 402

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKSSIPIDKISDSQVQE-- 540
              D M+ +Y+L+      ++  +A K+L Y  T  + L S  S +     +D  V++  
Sbjct: 403 PHFDTMIAAYLLEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFADVPVEKAA 462

Query: 541 -HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            ++ E++++  +L+ +L  KL    L +V+ +++ P++ V+++ME+ G+ +D + LK++S
Sbjct: 463 NYSCEDADITYRLYKILSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLS 522

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLE 658
            E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG + T  + LE
Sbjct: 523 EEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLE 582

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++  G++ II  ILE+R++ K+KSTY D+LP  +N +T R+H  ++   T TGRL+S +P
Sbjct: 583 EL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRLSSSDP 641

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE  +D+
Sbjct: 642 NLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDV 701

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H + A+ IF V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L +P  EA   I  YF 
Sbjct: 702 HTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMIVNYFV 761

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P + +YI++  +  ++ GYV T+FGR+    ++ +   + +   ER AIN PIQG+AA
Sbjct: 762 LYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPIQGTAA 821

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI + + L++ K+ +KM++Q+HDELVFEVP+EE     +++   M       + 
Sbjct: 822 DIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEEKDALVELVKDRMTNV----VK 877

Query: 958 LRVPLKVNIKVSNNW 972
           L VPL+V++ +   W
Sbjct: 878 LSVPLEVDVTIGKTW 892



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/261 (40%), Positives = 156/261 (59%), Gaps = 6/261 (2%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG++  YRA+YA         G+P NA  G   ML + +++        + AV F
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSTGIPTNATYGVARMLVRFIKDHIIVG-KDYVAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++   YKA RPK P++L+ QLP ++   +A G+  +E++G+EADDIIAT  
Sbjct: 62  DKKAATFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                    + I++ DKD++QLV+    ++  VK     E  D + V +K+G+ P+++  
Sbjct: 122 VKGLPLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPQQIPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L ALTGD IDNIPG+ GIG KTA  LL++Y +LE+IL +   + QK R+  +L   E A 
Sbjct: 182 LLALTGDEIDNIPGVTGIGEKTAVQLLEKYKDLEDILNHVRELPQKVRK-ALLRDRENAI 240

Query: 242 LSRKLVMLRTDVPITIPLEHL 262
           LS+KL +L T+VPI I  E L
Sbjct: 241 LSKKLAILETNVPIEINWEEL 261


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/510 (39%), Positives = 315/510 (61%), Gaps = 25/510 (4%)

Query: 465 IGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           +GH++K     L+  GI      F D  L +Y+LD  RSS+D+A + ++           
Sbjct: 376 VGHDLKPLYNWLYSQGIEPPAPAF-DTALAAYLLDPSRSSYDLADLCRQH---------- 424

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                  + ++      +     ++V+ +L   +  +L  + +  +Y  ++ P++ ++++
Sbjct: 425 ------GLGELPPGDTPDLWATRASVLPELHRRMEAELAAQGVDRLYREVELPLMPILAE 478

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G+ ID   L ++S E+ + +L + + IY+L+G +FN+SSPKQLGD+LF KL  PSG
Sbjct: 479 MEAVGVGIDPAALHEMSVELERRILQVSQEIYELAGMQFNISSPKQLGDVLFGKLGLPSG 538

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTK+G + T A+ LE++     PI   +L++R L+K+K TY D+L   +  R  R+HT 
Sbjct: 539 KKTKSGGYSTDAEVLEELAAA-YPIAARVLDYRTLTKLKGTYVDAL-GQLIARDGRIHTT 596

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++     TGRL+S +PNLQNIPI+ + G++IR+AF++ P   L+SADYSQIELR++AH +
Sbjct: 597 FAQTVAETGRLSSKDPNLQNIPIRIEEGRRIRKAFVARPGCVLLSADYSQIELRVVAHFS 656

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L + F +  DIH   AAE+FGV +++V+P+MRR AK +NF +IYG + F LA  + 
Sbjct: 657 GDPALREAFLHDQDIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLIYGQTDFGLARSVG 716

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R+EA  +I+ YF +F G+  Y+E+ K   R+ GYV T+ GRR    EIN    +IR  
Sbjct: 717 ISRAEARAFIETYFAKFAGVRRYMEEKKAEAREKGYVTTLDGRRRPLPEINHRVFTIRQN 776

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AIN PIQG+AAD+ +RAMI+V +++ +  L+ +M+LQ+HDELVFE P  E+   ++
Sbjct: 777 AERMAINTPIQGTAADLMKRAMIAVRRAMREEGLSARMILQVHDELVFECPVGEVDRLAR 836

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++   ME A    + L VPLKV +KV  +W
Sbjct: 837 LVRREMEGA----MKLDVPLKVEVKVGPDW 862



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/295 (38%), Positives = 160/295 (54%), Gaps = 16/295 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L L+DG+S   RAFYA  L S   DG+  NA+ GF  ML+KLL   + +    +
Sbjct: 1   MPKPEKLLLLDGNSLANRAFYALRLFS-TSDGVYTNAVYGFLTMLFKLLDEEQPD----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR  +Y DYKA R   P+   PQL L+R    A  IP   ++ +EADDI
Sbjct: 56  VAVAFDKGRQTFRTALYEDYKATRKAPPDEFRPQLDLLREVLTALNIPWFRVENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176
           + T    A  EG    I++ D+D +QL+S    +  T K      + D E +  ++G+ P
Sbjct: 116 MGTLARQAAAEGLHTLIVTGDRDALQLISDRVTVVMTKKGITETVRYDPETLKAEYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENI 233
            +++ L+AL GD+ DNIPG+PG+G KTA  LL +YG ++ +  +   IK   Q K REN 
Sbjct: 176 SQIIDLKALMGDASDNIPGVPGVGEKTALKLLADYGTVDGVYAHLDEIKGALQAKLREN- 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
               + A LSR L  +  D P+T   E L   + N P+  +  + LEF  L++RV
Sbjct: 235 ---RDKAELSRTLATINLDAPVTFDREALRRREPNYPQAYALFQRLEFKSLLSRV 286


>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
 gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
          Length = 878

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + DIA++A+  ++ +    E +  K  K S+P     
Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAVYGKGVKRSLP----D 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + EH +  +  I   W L +P    L   +   +  +L++P+  ++++ME TG+ +D
Sbjct: 442 EQTLAEHLVRKAAAI---WALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YS 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A  LE++    + I++NIL +RQL K++STY + L   +   T +VHT ++ A T TG
Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+  LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+ +Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EEI    +++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A    + LRVPLKV+      W
Sbjct: 857 A----VTLRVPLKVDYHYGPTW 874



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/295 (40%), Positives = 175/295 (59%), Gaps = 11/295 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V IIS D+DL QL S    + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKIISGDRDLTQLASRHVTV-DITKKGITDIEPYTPETVREKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   +K +K +EN+ +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKGEKLKENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + + A LS++L  +  D P+ + L+ ++ E  +  ++I+  K L F   + ++A 
Sbjct: 235 HRDLALLSKQLASICRDAPVELSLDDIVYEGQDREKVIALFKELGFQSFLEKMAA 289


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + DIA++A+  ++ +    E +  K  K S+P     
Sbjct: 384 GIELRGVAFDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAVYGKGVKRSLP----D 439

Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + EH +  +  I   W L +P    L   +   +  +L++P+  ++++ME TG+ +D
Sbjct: 440 EQTLAEHLVRKAAAI---WALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 496

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 497 TKRLEQMGSELAEQLRAIEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YS 555

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A  LE++    + I++NIL +RQL K++STY + L   +   T +VHT ++ A T TG
Sbjct: 556 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQALTQTG 614

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 615 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEA 674

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+  LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 675 FQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 734

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+ +Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 735 FIERYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 794

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EEI    +++   ME+
Sbjct: 795 PIQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQ 854

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A    + LRVPLKV+      W
Sbjct: 855 A----VTLRVPLKVDYHYGPTW 872



 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 117/289 (40%), Positives = 172/289 (59%), Gaps = 11/289 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H  V FD
Sbjct: 5   LVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTHLLVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E+  +EADDII T   
Sbjct: 60  AGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGTLAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181
            AE+EGF V IIS D+DL QL S    + D  K+   DIE      V +K+G+ PE++V 
Sbjct: 120 RAEQEGFEVKIISGDRDLTQLASRHVTV-DITKKGITDIEPYTPETVREKYGLTPEQIVD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   +K +K +EN+ ++ + A 
Sbjct: 179 LKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKGEKLKENLRQHRDLAL 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           LS++L  +  D P+ + L+ ++ E  +  ++I+  K L F   + ++A 
Sbjct: 239 LSKQLASICRDAPVELSLDDIVYEGQDREKVIALFKELGFQSFLEKMAA 287


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/527 (40%), Positives = 322/527 (61%), Gaps = 25/527 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508
           L+ L+   EN    K  H+ K    +LH +GI ++    D M+ +Y+L+   S +D+  +
Sbjct: 375 LTVLQALCENSEIKKYFHDAKSALWMLHHHGIELKSLAFDTMVAAYLLNPTASGYDLIDL 434

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           A + L              +P++     +V   A   ++ IL+L   L  KL +++   +
Sbjct: 435 ALEHLGIV-----------LPVN----GEVSLAA--KADAILKLAGELVKKLHLQEEDRL 477

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y  ++ P++ V++ ME+ G+ +D+  LK++SAE+   + SL   I+ L+GE FN++SPKQ
Sbjct: 478 YFEVELPLVQVLADMEMAGVTVDKQGLKEMSAELHDMIESLAHRIHTLAGEDFNINSPKQ 537

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG ILF KLK P   KTKTG + T A+ LE++   ++ I+  ILE+RQL+K+KSTY D L
Sbjct: 538 LGHILFEKLKLPVYKKTKTG-YSTDAEVLEKL-AEEHEIVALILEYRQLAKLKSTYTDGL 595

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-S 747
              ++ +T R+H+ +    T TGRL+S EPNLQNIPI+ + G++IR+ F+      LI +
Sbjct: 596 AALVDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLESGRRIRKVFVPRQKGNLILT 655

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAH+++     + F    DIH   AAE+FGV +E+V+P MR  AK +NF 
Sbjct: 656 ADYSQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRSRAKAVNFG 715

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I+YGIS F LA  L++ R EA  YI  YF R PG+ +YI++     +  GYV T+  RR 
Sbjct: 716 IVYGISDFGLARDLKVSRREAKSYIDNYFARCPGVKDYIDRVIKEAKHTGYVTTLLNRRR 775

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ SP  + R+  ERAA+N PIQGSAADI + AM+ V + L +  L  K++LQ+HDE
Sbjct: 776 YLPDLFSPNYNARSFGERAAMNTPIQGSAADIIKLAMVRVARELRERNLQAKLVLQVHDE 835

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+F+VPE E+     ++   ME A LP   L VPL V++K+  NW E
Sbjct: 836 LIFDVPESEVNELVDLVRDCMENA-LP---LDVPLVVDVKLGPNWYE 878



 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/287 (41%), Positives = 168/287 (58%), Gaps = 12/287 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S ++RAF+A PLLS    G+  NA  GF NML K+LQ    E      AV FD
Sbjct: 6   LLVIDGNSLVHRAFHALPLLSNSK-GVITNAAYGFTNMLLKVLQ----EVEPGFVAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              VTFRNE Y DYK +R   P+ L PQ  +VR   +A  IP  E+ G+EADD+I T T 
Sbjct: 61  KGKVTFRNEAYADYKGHRQATPDELRPQFVIVRDILKAMRIPYFELAGYEADDLIGTITT 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
             E  G  V I++ D+D +QLVSP T +  T K     E  D   V  K+G+ P ++V L
Sbjct: 121 RGEATGLNVIILTGDRDALQLVSPKTKVMLTRKGITEIELFDEGLVWDKFGVTPNQIVDL 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YAETAR 241
           +AL GD+ DNIPG+PGIG KTAA L++E+G++E I+ N   +    R++ +L    E A 
Sbjct: 181 KALQGDASDNIPGVPGIGAKTAAALIKEHGSVEQIIKNIDNL--TPRQQKLLRGMEEQAM 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           LS++L  + TDVP+ + L     +  +  +L+     LEF  LI ++
Sbjct: 239 LSKRLATIVTDVPMDLDLAACSWQGPDNQKLLEIFTELEFKTLIKQL 285


>gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
          Length = 887

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/534 (42%), Positives = 329/534 (61%), Gaps = 18/534 (3%)

Query: 448 EILSY--LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504
           E+LS   +K+  EN    K   N K   + LHR GI + G   D +L+SY+L++  +S+D
Sbjct: 359 ELLSAPEIKELLENPKIKKDTFNAKAHYVALHRQGIELHGNGFDFLLVSYLLNTNDNSND 418

Query: 505 IASIAQKWLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           +  +A +   Y   + +E+  K +   +P D+   S    H ++    I QL   L  +L
Sbjct: 419 LGQLAHEHNYYQVQSDEEVYGKGKSRHLPDDR---SVFFTHLVQKGMAIEQLKHPLTDQL 475

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
              +   +Y  +++P+  V+++MEI G+ +D   LK++ +++ + L  LE+ IY+ +GE+
Sbjct: 476 HENEQWPLYTDIERPLSHVLAKMEIAGVHVDATTLKEMGSKLKERLAELEQAIYNEAGEE 535

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN++S KQLG ILF K+K P   KTKTG + T+ + LE++  G  PII NIL +RQ+SKI
Sbjct: 536 FNINSTKQLGTILFEKMKLPVIKKTKTG-YSTSVEVLEKLQ-GRAPIIDNILVYRQISKI 593

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739
           +STY   L   I+   Q++HT Y    T TGRL+S++PNLQNIP++ + G+KIRRAF  S
Sbjct: 594 QSTYITGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRRAFKPS 653

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMR 798
            P  K+ S+DYSQ+ELR+LAH+     L Q F +  DIH   A  IF +   EKV+P MR
Sbjct: 654 QPGWKIFSSDYSQVELRVLAHVTGDRNLQQDFIDGKDIHESTARRIFHLLPGEKVTPNMR 713

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R AK +NF I+YGIS + L+  + + R +A ++I+ YF  FPG+ EYIE      ++ GY
Sbjct: 714 RQAKAVNFGIVYGISDYGLSQNIHVTRKQAHEFIQSYFKEFPGVQEYIENIVKLAKKQGY 773

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           VET+  RR +  EINS   S R+  ER A+N PIQGSAADI + AMI++++ L+   L  
Sbjct: 774 VETLTHRRRYLPEINSKNFSRRSFAERTAMNTPIQGSAADIIKIAMINMNEQLQKAGLKA 833

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           KMLLQIHDEL+FE PEEEI    +++   M+ A    + L VPLKV  KV + W
Sbjct: 834 KMLLQIHDELIFEAPEEEIDQLRELVPKVMDSA----VKLDVPLKVESKVGDTW 883



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 163/307 (53%), Gaps = 15/307 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL-LSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           E  L L+DG+S ++RAFYA    + R    DGL   AI GF  ML  +L N + ++    
Sbjct: 3   EKQLLLIDGNSIVFRAFYAMHTQIDRFTNQDGLHTAAIYGFKLMLDHVLDNFKPDAAL-- 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR   Y DYKA R K PE L  Q P VR   +A G+ + E+  +EADDI
Sbjct: 61  --VAFDAGKTTFRTAKYHDYKAGRAKTPEELTEQFPYVRQLVEASGLHSYELPDYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176
           I T    A++ GF   I+S D+DL QL +  T +  T K     E    E++ +K G+ P
Sbjct: 119 IGTLAKQADQAGFRTLIVSGDRDLTQLATDHTTVAVTKKGVTQTEHFTPEYMKEKLGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+  IG KTA  L++EYG+L+ +  N  ++K+ KR+EN++  
Sbjct: 179 TQFIDVKALMGDSSDNYPGVTKIGEKTALNLIREYGSLDGLYENIDQMKKSKRKENLINE 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              AR  + L  +R D P+ I L  L  E     +LI   + L F   + ++    D   
Sbjct: 239 EAIARQCQDLARIRRDAPVKIGLADLAYEGPQQEKLIDLFEKLNFKSFLAKMQVAPDTH- 297

Query: 297 ANIEPVV 303
              +PVV
Sbjct: 298 ---QPVV 301


>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
          Length = 876

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/505 (41%), Positives = 320/505 (63%), Gaps = 28/505 (5%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + D+A++A+ K     R +     K  K S+P     
Sbjct: 384 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 439

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE------RLDKPMIDVVSQMEITGI 588
           +  + EH +  +  I   W L RP L     L   E      +L++P+  ++++ME TGI
Sbjct: 440 EPTLAEHLVRKAAAI---WALERPSL---DELRSNEQDGLLIKLEQPLATILAEMEFTGI 493

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D   L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG
Sbjct: 494 KVDTKRLEQMGSELAEQLRAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG 553

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T+A  LE++    + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T
Sbjct: 554 -YSTSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQALT 611

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L
Sbjct: 612 QTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNL 671

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F   LDIH   A +IF V+ E+V+  MRR AK +NF ++YGIS + LA  L I R E
Sbjct: 672 IEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGVVYGISDYGLAQNLNITRKE 731

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA++I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A
Sbjct: 732 AAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTA 791

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   
Sbjct: 792 MNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEV 851

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           ME+A    + LRVPLKV+      W
Sbjct: 852 MEQA----VALRVPLKVDYHYGPTW 872



 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/323 (39%), Positives = 185/323 (57%), Gaps = 15/323 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H  V 
Sbjct: 3   NKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKILAEER----PTHLLVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDII T 
Sbjct: 58  FDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKM 179
              AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ PE+M
Sbjct: 118 AARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLTPEQM 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +Y + 
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +R D P+ + L+ +I E  +  ++I+  K L F   + ++    D   A  
Sbjct: 237 ALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAPTAED 292

Query: 300 EPVVLDINTTENKGIAIETEIDR 322
           E  ++++      GI  E   D+
Sbjct: 293 ETPLMEMEFVIADGITDEMLADK 315


>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
 gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
          Length = 874

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/521 (39%), Positives = 316/521 (60%), Gaps = 19/521 (3%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514
              +E   K+ +N K         G  +RG   DI L +Y+L+   + + +  +A + L 
Sbjct: 369 LLADETIPKVTYNAKDVCNACKAKGTELRGLCFDIQLAAYLLEPTAAKYPLTELACQHLG 428

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
               ++ K    +            ++A   + V+ +L+ +L+ KL+   L  +YE ++ 
Sbjct: 429 LAVGDMDKEHLGT-----------PDYAGWAAEVVQRLYPVLKEKLVAAGLAELYEEIEL 477

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P++ V+S+MEI GI++D   L  ++ EI+  + +L   IY L+G++FN++S +QLG ILF
Sbjct: 478 PLVPVLSEMEIAGIRVDLTQLDALAQEITDRIETLLTEIYQLAGQEFNVNSTRQLGHILF 537

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
             LK P   KTKTG + T A+ LE++  G +P+I  +LE+R L+K+KSTY D L + I  
Sbjct: 538 EVLKLPVIKKTKTG-YSTDAEVLEKL-AGQHPLIDCLLEYRLLTKLKSTYLDGLRDLIRA 595

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQI 753
            T R+HT ++   T TGRL+S EPNLQNIPI+T++G++IR  F+  P    ++SADYSQI
Sbjct: 596 DTGRIHTHFNQTVTATGRLSSSEPNLQNIPIRTEIGRRIRELFVPGPGYDWIMSADYSQI 655

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR+LAH++    L   F ++ DIH   AAE+FGV + +V+ QMR  AK +NF I+YGIS
Sbjct: 656 ELRVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQMRARAKAVNFGIVYGIS 715

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F L+  + + R EA  YI  YF ++ G+  YI+   N  RQ GYV T+FGRR    +IN
Sbjct: 716 DFGLSRDIGVSRKEAGQYIDSYFAKYRGVKNYIDNVINLARQQGYVTTLFGRRRFLPDIN 775

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   + R   ER A+N PIQG+AADI ++AMI+V++ L D +L +++LLQ+HDELV EV 
Sbjct: 776 SGNFNQRAFAERTAMNTPIQGTAADIIKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVA 835

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E E    +Q++  +ME A    + L VPL  ++K   NW +
Sbjct: 836 EAERVLVAQLVKQAMEDA----VTLAVPLVADVKTGANWAQ 872



 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 12/295 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DGSS ++RAFYA P L+    GL  NA+ GF  ML KLL +++ + IA    V FD
Sbjct: 5   MVIIDGSSLMHRAFYALPPLTTAA-GLYTNAVYGFTTMLVKLLSDNKPDLIA----VAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y +YK++R   P  L  Q  LV     AFGIP +E  G+EADDII T   
Sbjct: 60  KGRETFRSQVYAEYKSHRQATPGELSEQFALVHEVLAAFGIPVLEKPGYEADDIIGTLAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182
            A ++ + V I++ D+D +QL+ P T +  T K     E +DI  + +K+G+ PE++  L
Sbjct: 120 QASRQDYDVFIVTGDRDALQLIGPRTKVMLTRKGISETELVDINVLQEKYGLLPEQITDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DNIPG+PGIG KTA  LL+E+G++EN+L N  ++  KK +E++   AE A L
Sbjct: 180 KGLMGDASDNIPGVPGIGEKTAGKLLREFGSVENLLANIDKVSGKKLQESLRANAELALL 239

Query: 243 SRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           S+KL  +  DVP+   LE L    D +  R+    + LEF  L+ ++   +D  A
Sbjct: 240 SKKLATIVCDVPLDCSLEALKAAPDVD--RVREVFQRLEFKSLLAKLPELFDSKA 292


>gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 875

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/552 (41%), Positives = 328/552 (59%), Gaps = 19/552 (3%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           FI L++H+ + +      T E     K++ E++   K+ ++ K   + +HR G ++ G  
Sbjct: 332 FIGLTIHSDKGTYFFTKETAENSPAFKEWIESDAS-KVVYDAKKTMVAMHRLGYAVSGIT 390

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541
            DIML SY+L+   S  D  S+A +   YT  E       K  K S P +++    V  H
Sbjct: 391 FDIMLASYLLNPSDSIADFTSVAIRH-DYTEVETDEAVYGKGAKRSTPEERV----VAPH 445

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +  I  L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ +  E
Sbjct: 446 LARKAVAIAVLEKRLLDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVE 505

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL  P+  KTKTG + T A  LE + 
Sbjct: 506 LAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL- 563

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQ
Sbjct: 564 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R +A D+I RYF  +P
Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYP 743

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI 
Sbjct: 744 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 803

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI +   L+  KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L V
Sbjct: 804 KKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 859

Query: 961 PLKVNIKVSNNW 972
           PLKV+    + W
Sbjct: 860 PLKVDSAFGDTW 871



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/309 (37%), Positives = 170/309 (55%), Gaps = 10/309 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHATFKGYKGGRQKTPSELSEQFPFIRELLAAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + P +++
Sbjct: 117 TKKAEADGLEVAIITGDRDLTQLASDKTTVYITKKGIADMETNTPETLKEKYNLTPAQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+ G++E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGSVESVLEHADEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  + PI   +E    +     ++I  LK ++FT L+  +      +A  +
Sbjct: 237 AILSKELATINVESPIECTIESTKYDGYQTEKVIPLLKEMQFTTLLKNIEGDTPEEAKEL 296

Query: 300 EPVVLDINT 308
           + +  D+ T
Sbjct: 297 KELTFDVLT 305


>gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 904

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 288/974 (29%), Positives = 479/974 (49%), Gaps = 104/974 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAF+A P  +     G   NA+ GF +ML  LL    KE   SH AV F
Sbjct: 22  LMLIDGHSMAFRAFFALPAENFSTTGGQNTNAVYGFLSMLATLL----KEEQPSHIAVAF 77

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR +++PDYKA R   P     Q+ +++   +  GI  IE + +EADDIIAT  
Sbjct: 78  DVGRKTFRTDLFPDYKAQREATPPEFKGQVEILKDVLKTLGITTIEKEDYEADDIIATLA 137

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             A+  G+   I++ D+D  QLV+  TT LY                   P   +  L  
Sbjct: 138 VAAKPLGYDTLIVTGDRDSFQLVNDTTTVLY-------------------PMRGVSVLHR 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T ++++   G+    Y   A L    G+  + L N   + +K   + I+EY     L  
Sbjct: 179 FTPEAVEEKYGLTPSQYPDFAAL---RGDPSDNLPNIPGVGEKTATKWIVEYGSLDNL-- 233

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                         LEH   ++  G    SF + L+  ++  ++          + P  L
Sbjct: 234 --------------LEHA--DEIKGKAGNSFRERLDQVRMNRKLTEMIKDMELPVGPDDL 277

Query: 305 DINTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           ++ T +   +A E + ++  T ++    +++          +T  ++ +E ++   +  +
Sbjct: 278 EMGTADVAEVATEFDALEFGTNLRERVLAAV----------KTDGEIPVEAVENRDEVGV 327

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +     + ++T+  +     +  +G+ +      T DA HS    IAI   D++      
Sbjct: 328 DTLPLDEWLSTRRGRPLAVAVTGVGTPA------TGDA-HS----IAIVDTDRR------ 370

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              +  DL+            +T E    L  +  +E   K+ H  K    +L   G  +
Sbjct: 371 --AVVADLA-----------DITPEAEKALAGWLADEASPKLLHGAKAVFHMLAGRGFEL 417

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQE 540
           RG E D  + +Y+L  G+ ++++A + Q+ L   ++++  S   S  + +    DSQV  
Sbjct: 418 RGIEHDTAIAAYLLRPGQRTYELADVYQRHL---QRQLNPSNNGSNQLTLLDAGDSQV-- 472

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             ++ +  IL+L   L  +L       +Y  L+ P++ ++++ME TGI +D   L++   
Sbjct: 473 -LVDEAVAILELAGELTSQLQEINGFELYRDLEIPLLSILARMEATGIAVDVATLEEQLE 531

Query: 601 EISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
                +   EE   +L+G+   NLSSPKQL  +LF     P   KTKTG     A+    
Sbjct: 532 TFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAEIEAL 591

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                +P + ++L  RQ  K+K+T  + L   +     R+HT ++     TGRL+S +PN
Sbjct: 592 AAKNPHPFLDHLLAHRQYQKMKTTL-EGLIRSVGS-DGRIHTTFNQTVASTGRLSSTDPN 649

Query: 720 LQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++T+ G+KIR  F+     + L++ADYSQIE+R++AH+++   L + +    D+H
Sbjct: 650 LQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 709

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             V +++F V I+ V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++ YF R
Sbjct: 710 NYVGSKVFDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKTIMESYFER 769

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+  Y+ +     R++GY ET+FGRR +  E+NS     R   ERAA+NAPIQG+AAD
Sbjct: 770 FGGVQRYLAEVVEQARKSGYTETLFGRRRYLPELNSDNRVARENAERAALNAPIQGTAAD 829

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI V + L    + +++LLQ+HDELV E+   E+     I+   M+ A    I L
Sbjct: 830 IIKVAMIRVDRELRATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNA----ITL 885

Query: 959 RVPLKVNIKVSNNW 972
           RVPL+V+     +W
Sbjct: 886 RVPLEVSAGSGRDW 899


>gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 945

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 288/974 (29%), Positives = 479/974 (49%), Gaps = 104/974 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAF+A P  +     G   NA+ GF +ML  LL    KE   SH AV F
Sbjct: 63  LMLIDGHSMAFRAFFALPAENFSTTGGQNTNAVYGFLSMLATLL----KEEQPSHIAVAF 118

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR +++PDYKA R   P     Q+ +++   +  GI  IE + +EADDIIAT  
Sbjct: 119 DVGRKTFRTDLFPDYKAQREATPPEFKGQVEILKDVLKTLGITTIEKEDYEADDIIATLA 178

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             A+  G+   I++ D+D  QLV+  TT LY                   P   +  L  
Sbjct: 179 VAAKPLGYDTLIVTGDRDSFQLVNDTTTVLY-------------------PMRGVSVLHR 219

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T ++++   G+    Y   A L    G+  + L N   + +K   + I+EY     L  
Sbjct: 220 FTPEAVEEKYGLTPSQYPDFAAL---RGDPSDNLPNIPGVGEKTATKWIVEYGSLDNL-- 274

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                         LEH   ++  G    SF + L+  ++  ++          + P  L
Sbjct: 275 --------------LEHA--DEIKGKAGNSFRERLDQVRMNRKLTEMIKDMELPVGPDDL 318

Query: 305 DINTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           ++ T +   +A E + ++  T ++    +++          +T  ++ +E ++   +  +
Sbjct: 319 EMGTADVAEVATEFDALEFGTNLRERVLAAV----------KTDGEIPVEAVENRDEVGV 368

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +     + ++T+  +     +  +G+ +      T DA HS    IAI   D++      
Sbjct: 369 DTLPLDEWLSTRRGRPLAVAVTGVGTPA------TGDA-HS----IAIVDTDRR------ 411

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              +  DL+            +T E    L  +  +E   K+ H  K    +L   G  +
Sbjct: 412 --AVVADLA-----------DITPEAEKALAGWLADEASPKLLHGAKAVFHMLAGRGFEL 458

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQE 540
           RG E D  + +Y+L  G+ ++++A + Q+ L   ++++  S   S  + +    DSQV  
Sbjct: 459 RGIEHDTAIAAYLLRPGQRTYELADVYQRHL---QRQLNPSNNGSNQLTLLDAGDSQV-- 513

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             ++ +  IL+L   L  +L       +Y  L+ P++ ++++ME TGI +D   L++   
Sbjct: 514 -LVDEAVAILELAGELTSQLQEINGFELYRDLEIPLLSILARMEATGIAVDVATLEEQLE 572

Query: 601 EISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
                +   EE   +L+G+   NLSSPKQL  +LF     P   KTKTG     A+    
Sbjct: 573 TFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAEIEAL 632

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                +P + ++L  RQ  K+K+T  + L   +     R+HT ++     TGRL+S +PN
Sbjct: 633 AAKNPHPFLDHLLAHRQYQKMKTTL-EGLIRSVGS-DGRIHTTFNQTVASTGRLSSTDPN 690

Query: 720 LQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++T+ G+KIR  F+     + L++ADYSQIE+R++AH+++   L + +    D+H
Sbjct: 691 LQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 750

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             V +++F V I+ V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++ YF R
Sbjct: 751 NYVGSKVFDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKTIMESYFER 810

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+  Y+ +     R++GY ET+FGRR +  E+NS     R   ERAA+NAPIQG+AAD
Sbjct: 811 FGGVQRYLAEVVEQARKSGYTETLFGRRRYLPELNSDNRVARENAERAALNAPIQGTAAD 870

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI V + L    + +++LLQ+HDELV E+   E+     I+   M+ A    I L
Sbjct: 871 IIKVAMIRVDRELRATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNA----ITL 926

Query: 959 RVPLKVNIKVSNNW 972
           RVPL+V+     +W
Sbjct: 927 RVPLEVSAGSGRDW 940


>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
 gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
 gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
          Length = 871

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/475 (44%), Positives = 300/475 (63%), Gaps = 12/475 (2%)

Query: 506 ASIAQKWLSYTRKEILK-SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE- 563
           AS AQ+  +    E++  +  + +P   + ++  +E  IE +  I+  ++ L  + I+E 
Sbjct: 401 ASRAQQITAIEDLELMNYALSAGLPQKNLFEAVEKEATIEEAAKIVVGFIDLYQQTILEL 460

Query: 564 ---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
              K   +Y+ +D P+  V+ +ME  GI++D + L Q+S+E    +L LEE I+ LSG K
Sbjct: 461 KDNKAFRIYKEIDLPVCFVIDKMEKAGIKVDANYLNQLSSEFGAEILKLEEEIFVLSGMK 520

Query: 621 FNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           FN+ SPKQLG+ILF K++ P G    K   + T A  LE+++    PI   +L WRQL+K
Sbjct: 521 FNIGSPKQLGEILFEKMQLPFGKTSAKANSYSTGADILEKLSEQGYPIADLLLRWRQLTK 580

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +K+TY DSLP  I+  T+R+HT +   ST TGRL+S EPNLQN+PI++  G KIR+AF++
Sbjct: 581 LKNTYTDSLPKQIDNITRRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSGEGNKIRQAFVA 640

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
               KLISADYSQIELRIL+HIA I  L Q F N  DIH   A +IF +  E+++ + RR
Sbjct: 641 EQGYKLISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQIFNLQKEELTSEHRR 700

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK INF IIYGIS F LA QL +  +EAA+YIK+YF  + G+ EY+E TK+F + NGYV
Sbjct: 701 KAKAINFGIIYGISAFGLAKQLNVSNTEAAEYIKKYFAEYKGVQEYMEATKSFAQANGYV 760

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
              FGR+     IN  +  ++   ERAAINAPIQG+ ADI + AM  + + +E  KL T+
Sbjct: 761 TDFFGRKCFVPLINDKR--LKQFAERAAINAPIQGTNADIIKIAMTLLDREIEKRKLKTR 818

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++LQIHDEL+FE P +EI T   II   ME +     N+ VP+   I+  NNW E
Sbjct: 819 LVLQIHDELLFEAPIDEIETIMPIIKQIMENST----NMDVPIITEIRAGNNWME 869



 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/318 (39%), Positives = 183/318 (57%), Gaps = 11/318 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M K+N L L+DG  F++RA+YA  PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTKKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLNDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR+EIYP+YKANRP  PE L+ QLPLVR   +    P +E  GFEADD
Sbjct: 55  HAAVVFDSGGKNFRHEIYPEYKANRPPPPEDLIAQLPLVRDVARNLNFPILEKNGFEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V +IS+DKDL+QL++    +YD +K + I  ++V++K+G+  +K+
Sbjct: 115 IIATFAAKTASIGEEVVVISSDKDLLQLMNDNVKIYDPLKAKYITEDNVVEKFGVTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G +ENI  +  ++   K+RE +    E 
Sbjct: 175 REVMALIGDKSDNIPGVPSIGPKTASSLITQFGTVENIFNSLEQVSSIKQRETLQNSKEA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN- 298
           A +S +L+ L  +V +   L+ L     +  +L  FL    F  L  R    +D   +  
Sbjct: 235 ALISWQLIGLDYNVDMDFKLDALEWSPPDHNKLTEFLHEYGFKSLYKRAENLFDIKISEH 294

Query: 299 ---IEPVVLDINTTENKG 313
              IE   ++I    NK 
Sbjct: 295 KEVIEEKAVEIKDISNKA 312


>gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
 gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
          Length = 887

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/506 (41%), Positives = 318/506 (62%), Gaps = 21/506 (4%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSSIPI 530
           LHR GI +     DI+L SY+LD+  +S+D+  +A +              K  K ++P 
Sbjct: 390 LHRLGIKLTAVNFDILLQSYLLDTNDNSNDLGQLAHEHDYDAIDTDDDVYGKGAKRAVP- 448

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                +++  H       I  L   L  +L+  +  ++Y  ++ P+  V+++MEI+GI++
Sbjct: 449 ---EQTELFNHLARKLAAINFLGKQLDQELVKNEQNNLYWDIELPLAIVLAKMEISGIKV 505

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D++ L Q+ +E ++ L  +E NIY+ +GE+FNL+SPKQLG +LF KLK P   KTKTG +
Sbjct: 506 DRNRLNQMQSEFTERLSEIETNIYNEAGEEFNLNSPKQLGVVLFEKLKLPIIKKTKTG-Y 564

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LE++  G++PII NIL +R LSKIKSTY D L   I+   ++VHT Y    T T
Sbjct: 565 STAVDVLEKLQ-GESPIIDNILNYRTLSKIKSTYVDGLLKVIHTTDEKVHTTYVQTLTQT 623

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPL 767
           GRL+S++PNLQNIP++ + G+KIR+AF+  P ++   ++S+DYSQIELR+LAHI     L
Sbjct: 624 GRLSSIDPNLQNIPVRIEEGRKIRQAFV--PAREGWHILSSDYSQIELRVLAHITGDQNL 681

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+N  DIH   A +IFG+ +  +V+P +RR AK +NF I+YGIS + L+  + I R 
Sbjct: 682 QEAFKNGEDIHATTAVKIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRK 741

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I+ YF  FPG+ +YI+++    ++ GYVETI  RR +  +INS   ++R+  ER 
Sbjct: 742 DAKKFIETYFKEFPGVKKYIDESVQLAKEQGYVETIAHRRRYLPDINSSSFNLRSFAERT 801

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI +   LE   L ++MLLQ+HDEL+FEVP+EE+T   +++  
Sbjct: 802 AMNTPIQGSAADIIKIAMIDMENELEKRNLKSRMLLQVHDELIFEVPDEEMTLMKELVPK 861

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972
            M+ A    + L VPLKV     N W
Sbjct: 862 VMDSA----VKLDVPLKVGAAWGNTW 883



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 162/300 (54%), Gaps = 11/300 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++ L L+DG+S  +R+F+A    LS+    +GL  NAI GF  ML  +L+  +  +    
Sbjct: 3   KDKLLLIDGNSIAFRSFFALHNSLSKFVNKNGLHTNAIFGFNKMLDSILEQYQPTAAL-- 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFRN  + +YK  R K P  L  Q+P +R     +GI + E+  +EADDI
Sbjct: 61  --VAFDAGKTTFRNGKFDNYKGGRSKTPPELSEQMPYLRELLTGYGIKSYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE + +AV +++ D+DL QL S  T +  T K     E+    +V +K G+ P
Sbjct: 119 IGTLAKEAEAQDYAVVVVTGDRDLTQLSSEKTIVAVTKKGVSEVEEYTPAYVEEKLGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++ L GD+ DN PG+  +G KTA  LL+++ +LEN+  +   +K  K +E+++E 
Sbjct: 179 KQIIDIKGLAGDTSDNYPGVTKVGEKTAIKLLKQFDSLENLYEHLDELKPSKMKEHLIED 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A +S+ L  +R D PI I L+ +     N   L  F   + F   ++++  T   D 
Sbjct: 239 RDNAFISKDLATIRRDAPIEISLDDVQYAGINEEYLREFYHQMNFKSFLSKLDQTATQDG 298


>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
          Length = 878

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/502 (41%), Positives = 321/502 (63%), Gaps = 22/502 (4%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + D+A++A+ K     R +     K  K S+P     
Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + EH +  +  I   W L RP   +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A  LE++    + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    +++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A    + LRVPLKV+      W
Sbjct: 857 A----VELRVPLKVDYHYGPTW 874



 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/331 (38%), Positives = 188/331 (56%), Gaps = 15/331 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRLKKKLVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           Y + A LS++L  +R D P+ + L+ +I E  +  ++I+  K L F   + ++    D  
Sbjct: 235 YRDLALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            A  E  ++++      GI  E   D+   +
Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADKAALV 321


>gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
 gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
          Length = 875

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/498 (44%), Positives = 302/498 (60%), Gaps = 35/498 (7%)

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           ++   ED+ L+ Y L +G S  ++   AQK                          V E+
Sbjct: 406 AITAIEDLELIQYALSAGLSQKNLFEEAQK------------------------ETVIEN 441

Query: 542 AIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            I  S  I+  ++ L  + I+E    K   +Y  +D P+  ++ +ME  GI++D + LKQ
Sbjct: 442 IINESAKIVINFISLYKQKILELKDNKAFRLYSNIDLPICFILDKMEKVGIKVDANYLKQ 501

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQD 656
           +SAE    +  LEE I+ LSG KFN+ +PKQLG+ILF K++ P G A  KT  + T  + 
Sbjct: 502 LSAEFGTEIARLEEEIFALSGTKFNIGAPKQLGEILFEKMQLPFGKASAKTNSYSTGVEI 561

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L++++     I   +L WRQL+K+K+TY DSLP  I+  T+RVHT +   ST TGR++S 
Sbjct: 562 LKKLSKHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITRRVHTTFLQTSTTTGRISSQ 621

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQN+PI++  G KIR+AFI     KLISADYSQIELRIL+HIA I  L Q F N  D
Sbjct: 622 EPNLQNVPIRSSEGNKIRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTNKDD 681

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A +IF +  +K++ + RR AK INF IIYGIS F LA QL +  SEAA+YIK+YF
Sbjct: 682 IHTQTACQIFNLPKDKLTSKHRRKAKAINFGIIYGISAFGLAQQLNVTNSEAAEYIKKYF 741

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             + G+ EYIE+TK FV  NGYV   FGR+     I++ K  ++   ERAAINAPIQG+ 
Sbjct: 742 AEYKGVQEYIEQTKAFVSSNGYVTNFFGRKCFLPSIHNKK--LKQFAERAAINAPIQGTN 799

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI++ + +E  KL T+++LQIHDEL+FE P +EI     II   ME +     
Sbjct: 800 ADIIKIAMINLDQEIEKLKLKTRLVLQIHDELLFEAPTDEIELVIPIIKKIMENST---- 855

Query: 957 NLRVPLKVNIKVSNNWQE 974
           N+ VP+   I+  NNW E
Sbjct: 856 NMDVPIITEIRAGNNWME 873



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/294 (41%), Positives = 173/294 (58%), Gaps = 7/294 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M K+N L L+DG  F++RA+YA  PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTKKNTLLLIDGYGFVFRAYYAQQPLTSPK--GKPVGALYGFTSMLLKLLSDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR+ IYP+YKANRP  PE L+ QLPLVR    +   P +E  G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHHIYPEYKANRPPPPEDLIIQLPLVRDVASSLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL++    +YD +K +    + V+KK+G    K+
Sbjct: 115 IIATFATKTAALGEDVVIISSDKDLLQLMNENIKIYDPLKGKYSTEDDVVKKFGTTANKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  +I   K+RE +    E 
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSIENIFNSLDQISSVKQRETLQNSKEA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  R    +D
Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYRRAENLFD 288


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/547 (39%), Positives = 322/547 (58%), Gaps = 14/547 (2%)

Query: 433 VHTSQD-STGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDI 489
            H  +D S   N L   E+   L     ++  LK+GHN+KYD  VLHR+ + +     D 
Sbjct: 369 AHRREDGSAAANQLPLAEVRRALAPLLADDRRLKLGHNLKYDLQVLHRHDLPLAPPLADT 428

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           M+ SY++D  R SH +  ++++ L     +  E+    +       ++ +    ++ E+ 
Sbjct: 429 MIASYLIDPSRRSHGLDVLSEELLQRRLTSFAEVTDRDRRPEAFAHVAPAAAAAYSCEDV 488

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
                LW L +PKL   +L  ++ +++  ++ ++++ME  GI +D  +LK+++AE S+ L
Sbjct: 489 AATRLLWQLFQPKLAELELAELFYQVEITLLPILARMERVGILLDGQVLKELAAEFSQEL 548

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQWKTTAQDLEQINCGD 664
             L   IY L+G +FN++SP+QLG++LF +LK P G KTK  TG + T  ++LE++    
Sbjct: 549 ERLSSKIYQLAGVEFNINSPRQLGEVLFERLKLPHGRKTKGKTG-YSTDIRELERLAAYH 607

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           + +   I+  R LSK+KSTY D L   IN    R+HT ++   T TGRL+S  PNLQNIP
Sbjct: 608 D-LPAAIIAQRNLSKLKSTYVDKLSTLINPADGRIHTSFNQTVTATGRLSSSNPNLQNIP 666

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           ++T  G++IR AFI+ P  + ++ADYSQI+LR+LAH +    L + F+   DIHR  AAE
Sbjct: 667 VRTQEGRRIRGAFIAAPGHRFLAADYSQIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAE 726

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           IF VN   V+  MRR AKTINF IIYG+S F LA QLR  R EA  +I RYF  + G+  
Sbjct: 727 IFRVNPAMVTADMRRVAKTINFGIIYGMSAFGLAEQLRCSRKEAQVFIDRYFELYRGVKT 786

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           ++E+     R++G+V T+  RR    EINS     R   ER AIN PIQG+AADI + A 
Sbjct: 787 FMEEIVEQARRDGFVRTLLKRRRQLPEINSSNKLRREFAERTAINTPIQGTAADIIKLAA 846

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I+  + L      T+ LLQIHDEL+FEVPE+E     +++  +ME      + L VPL+V
Sbjct: 847 IACDRELRRKNFNTEALLQIHDELIFEVPEDEQAAVGKLVQQAMENV----MELTVPLRV 902

Query: 965 NIKVSNN 971
           N+K   N
Sbjct: 903 NLKSGPN 909



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 166/285 (58%), Gaps = 5/285 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L+L+DGS++IYRA++A   LS    G P +A+ GF   L +++    +E    +
Sbjct: 1   MSSREPLYLIDGSAYIYRAYHAIRPLSNAA-GQPTHAVYGFTTTLLRVI----REKTPRY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+ +D     FR+EIYP YKANRP++P  L  Q+P ++    A+ I  +E  G EADD+
Sbjct: 56  LAIAYDSKGPNFRHEIYPAYKANRPEMPADLACQIPYIKEVVSAYHITTLEQAGVEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA            + I+S DKDL+QLV+    L+D +++  +D   V KK+ + P++++
Sbjct: 116 IAAAARRLAGPDQPLIIVSGDKDLLQLVNEWVTLWDPMQDTFMDPAAVAKKYQVSPQQLL 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GDS DN+PG+PG+G KTAA L+ ++G+LE +  N  ++   K RE +  + + A
Sbjct: 176 DYFALIGDSSDNVPGVPGVGPKTAAKLIDQFGSLEQLFANLEQVSAAKLREKLAAHRQDA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           +L+R+L+ L+ D+ +   L+   L   +  +L      LEFT+LI
Sbjct: 236 QLARRLIRLKDDLELPTSLDDYTLPPPDQDKLRQLFTELEFTRLI 280


>gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis]
          Length = 875

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/493 (44%), Positives = 304/493 (61%), Gaps = 35/493 (7%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ED+ LM Y L +G S  ++            KE+LK       ID I         IE++
Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLKE----TLIDNI--------IIESA 447

Query: 547 NVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            +++  ++ L  + I+E    K   +Y  +D P+  ++ +ME  GI +D + LKQ+SAE 
Sbjct: 448 KIVIN-FISLYKQTILELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEF 506

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQIN 661
              +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A  KT  + T A+ LE+++
Sbjct: 507 GTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKTSSYSTGAEILEKLS 566

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+S EPNLQ
Sbjct: 567 EHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQ 626

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           N+PI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N  DIH   
Sbjct: 627 NVPIRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQT 686

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA++YIK+YF  + G
Sbjct: 687 ACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKG 746

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + EY+E+TK F   NGYV   FGR+     I+  K  ++ + ERAAINAPIQG+ ADI +
Sbjct: 747 VQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQLAERAAINAPIQGTNADIIK 804

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +     N+ VP
Sbjct: 805 IAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMDVP 860

Query: 962 LKVNIKVSNNWQE 974
           +   I+  NNW E
Sbjct: 861 IITEIRAGNNWME 873



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/294 (41%), Positives = 173/294 (58%), Gaps = 7/294 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+YA  PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+ K+G    K+
Sbjct: 115 IIATFATKTAALGEHVVIISSDKDLLQLMTKNIKIYDPLKGKYITEDDVVTKFGTTSNKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E 
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D
Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 348/605 (57%), Gaps = 19/605 (3%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + ++++I   V +L      +  +     +A  ++  A+A+S+     D  F V   FI 
Sbjct: 315 VADSQNIDSIVSRLANAKELALAVSGTPEEAMDARLTALALSS--AAGDACF-VPAEFI- 370

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489
                   S G+     E  S L     +E   K  HN KY   +L   G +++G + D 
Sbjct: 371 -----GSASEGQ-MFAAEGHSGLAALLGDEKISKTAHNAKYLMNLLLSAGQAVKGLDFDT 424

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           M+ +++L  G  +  I  +  +       +I      +      S+ Q+ E A   ++  
Sbjct: 425 MIAAHLL--GEKNLAIKDLVFEHFGIEIADIENILTRNGKKASFSEVQLSEAAQLAADYT 482

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
            +L  +   +L   +L+ ++ R++ P++ ++  ME TGI +D DLLK ++ +  + +  L
Sbjct: 483 FRLKGIFAAQLAETRLMDLFARVEMPLLPILLGMERTGIMLDTDLLKAMAEKTGRQIFKL 542

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
           EE+IY  +G  FN+ SP+QLG ILF +LK P   KTKTG + T A+ LE++  G + I+ 
Sbjct: 543 EEDIYARAGHNFNIGSPQQLGRILFDELKLPVIKKTKTG-YSTGAEVLEELK-GKHRIVD 600

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            ILE+R L K+KSTY D+LP  +N  T+R+HT ++   T TGRL+S EPNLQNIP++ ++
Sbjct: 601 LILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEM 660

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           G++IRRAFI+PP   L++ DYSQI+LR+LAH+++   L + F++  DIH   AA +  + 
Sbjct: 661 GREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIP 720

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
             KV+ + RR AKT+NF +IYG+S + L     +   EA  +IK YF ++P +  Y  + 
Sbjct: 721 PSKVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFEKYPRVAVYFSEI 780

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K  VR  GYVET+ GRR +  EINSP   +R   ER AIN P+QG++ADI + AM+ + +
Sbjct: 781 KQQVRTQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDE 840

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            L++ KL +++LLQ+HDEL+FEVP+ E+   S ++V +M  A    +   +PLKV +K  
Sbjct: 841 KLKEEKLKSRLLLQVHDELIFEVPKTELGRMSDLLVETMSGA----VAFEIPLKVELKSG 896

Query: 970 NNWQE 974
            NW +
Sbjct: 897 ANWGD 901



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/296 (36%), Positives = 160/296 (54%), Gaps = 26/296 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L DG++ ++RA++  P L+ +  G  V A  GF ++L K+L + + +     +A+ FD
Sbjct: 6   IVLFDGTNLVHRAYHVLPPLAIRKTGEVVGAAFGFASILIKVLTDLKPDC----YAISFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++  YKA RP +P+ L+ QL  VR    AF +P  E  GFEADD++ T   
Sbjct: 62  RKGPTFRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLAT 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDIEHVIKKW 172
            A   G  V I S D D MQLV P              +T LYD V         V  K+
Sbjct: 122 RAAAAGMEVIIASGDADSMQLVGPDIRILYPGPAGSFASTSLYDEVA--------VRAKY 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ PE +   +AL GD  DNIPG+PGIG KTA  L++EYG +E+I  N  +I     ++ 
Sbjct: 174 GLGPEHIADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKK 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + + AE AR S+ L  +  D+P+   +E    E  N  +++   + LEF +LI+R+
Sbjct: 234 LADNAEVARDSKILTTIVCDLPLDFSIEECRAEHYNRQKVVDLFRELEFFRLIDRL 289


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/425 (47%), Positives = 285/425 (67%), Gaps = 7/425 (1%)

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           I +L   + PKL   +L+ ++  ++ P+I V++++E  GI++D + L+ +S +  + L  
Sbjct: 443 IFKLAEGMVPKLEDMELIELFNDIEIPLITVLAELEYNGIKVDAEYLESLSRKWEEELNG 502

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           LE  I++L+GEKFN++SPKQLG ILF KL  P   KTKTG + T A+ LE++    +PII
Sbjct: 503 LESKIHELAGEKFNINSPKQLGGILFEKLGLPVIKKTKTG-YSTGAKVLEKLE-DKHPII 560

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
             I E+RQL K+KSTY D+LP  IN  T R+HT ++   T TGRL+S EPNLQNIP++TD
Sbjct: 561 PLISEYRQLMKLKSTYVDALPPMINPDTGRLHTSFNQMVTATGRLSSTEPNLQNIPVRTD 620

Query: 729 LGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            G++IRRAFI+      L++ADYSQIELR+LAHI+    L   F    DIH   A+E+F 
Sbjct: 621 EGREIRRAFITENEDWVLLAADYSQIELRVLAHISDDEGLKAAFNTGQDIHTQTASEVFE 680

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V  ++V+P MRRHAK INF I YG+SP+ LA  L I R EA+DYI +YF RF G+ +Y+E
Sbjct: 681 VEPDEVTPNMRRHAKVINFGIAYGMSPYGLARDLGISRQEASDYINKYFERFTGVKDYME 740

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           +     +  GYV TIF RR +  EINS     R+  ER AIN PIQG+AADI + AMI V
Sbjct: 741 RVVTEAKTKGYVTTIFNRRRYIPEINSRNYHRRSFAERTAINTPIQGTAADIMKLAMIKV 800

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           +  L+++    ++LLQ+HDEL+ EVP E++T  ++I+   MEKA    ++++VPL VN++
Sbjct: 801 YNRLKENGSPARILLQVHDELILEVPREDLTEMARIVKSEMEKA----VDMKVPLVVNLE 856

Query: 968 VSNNW 972
              NW
Sbjct: 857 SGPNW 861



 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 128/309 (41%), Positives = 186/309 (60%), Gaps = 9/309 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DG S  +RAFYA PLLS    G   NA+ GF  ML KLL   + + IA    V FD
Sbjct: 5   LYLLDGQSLAHRAFYALPLLSTSR-GEYTNAVFGFTRMLLKLLDEEKPDLIA----VAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y +YKA+R K+PE L PQL L++   ++F IP IEI+GFEADDII T   
Sbjct: 60  KKAPTFRHKEYKEYKAHRKKMPEELKPQLSLIKEVLKSFSIPIIEIEGFEADDIIGTMAR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
             E+EGF V I++ D+D +QLV+    +  T +      + D+  V +++ + P++++ +
Sbjct: 120 KGEEEGFEVVIVTGDRDALQLVTEDVSVMYTKRGISDIVRYDLNKVRERYELEPQQLIDM 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GDS DNIPG+PGIG KTA  LL+E+ +LE IL N  ++  KKR+EN+ +YA+ ARL
Sbjct: 180 KGLMGDSSDNIPGVPGIGEKTAIKLLKEFSSLEEILDNIDKVSGKKRKENLQKYADQARL 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++L  ++ DVP+ + L+   L   +   +    + LEF  L+NR          +I   
Sbjct: 240 SKRLGEIKVDVPLDVELDECHLGKFHKKNIRELFERLEFASLLNRFKEKTSISIDDISVK 299

Query: 303 VLDINTTEN 311
            LD    EN
Sbjct: 300 ELDRKGLEN 308


>gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067]
          Length = 566

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/552 (41%), Positives = 327/552 (59%), Gaps = 19/552 (3%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           FI L++H+ + +      T E     K++ E++   K+ ++ K   + +HR G ++ G  
Sbjct: 23  FIGLTIHSDKGTYFFTKETAENSPAFKEWVESDAS-KVVYDAKKTMVAMHRLGYAVSGIT 81

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541
            DIML SY+L+   S  D  S+A +   YT  E       K  K S P     +S V  H
Sbjct: 82  FDIMLASYLLNPSDSIADFTSVAIRH-DYTEVETDEAVYGKGAKRSTP----EESVVAPH 136

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +  I  L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ +  E
Sbjct: 137 LARKAVAIAVLEKRLLDDLEKNEQLSLMEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVE 196

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL  P+  KTKTG + T A  LE + 
Sbjct: 197 LAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL- 254

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQ
Sbjct: 255 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 314

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH  
Sbjct: 315 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 374

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R +A D+I RYF  +P
Sbjct: 375 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYP 434

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI 
Sbjct: 435 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 494

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI +   L+  KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L V
Sbjct: 495 KKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 550

Query: 961 PLKVNIKVSNNW 972
           PLKV+    + W
Sbjct: 551 PLKVDSAFGDTW 562


>gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
 gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
          Length = 883

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/535 (39%), Positives = 342/535 (63%), Gaps = 29/535 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K++  +E   K   + K  K+  +R+G+++ G   D+ L++Y++D+    ++I  +A++
Sbjct: 363 FKQWLADETIEKTMFDTKAMKVFANRFGLTVAGATYDVSLLAYLVDANEIVNEIYDVAKR 422

Query: 512 W---LSYTRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR-PKLIVEKL- 565
           +   L  T +E+  K  K  +P         +E  +  +++  ++++L   PK ++++L 
Sbjct: 423 FGISLLKTDEEVYGKGVKIKVP---------EEKEVFWNHLAAKIYVLATAPKRLLKQLD 473

Query: 566 ----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                 +Y  ++ P+ D++++MEI GI++DQ+ L ++  +  + L  +E+ IY+L+GE+F
Sbjct: 474 ENEQAQLYWEMELPLSDILARMEIQGIRVDQNRLIEMGLQFEERLKEIEQTIYELAGEEF 533

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++SPKQLG ILF K+  P   KTKTG   +TA D+ +     +PI++ ILE+RQL+K+ 
Sbjct: 534 NINSPKQLGVILFEKMNLPVIKKTKTGY--STAVDVLEKLASQSPIVECILEYRQLAKLN 591

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SP 740
           STY + L  +I+++  ++HT +    T TGRL+S +PNLQNIPI+T+ G+++R AF+ S 
Sbjct: 592 STYVEGLQTYIDEKG-KIHTRFVQNLTQTGRLSSQDPNLQNIPIRTEEGRQVRSAFLPSH 650

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRR 799
           P  KL+S+DYSQIELR+LAH+A    + + F+N++DIH   A  +FG+ N E+V+  MRR
Sbjct: 651 PEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRVFGIQNPEEVTSSMRR 710

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF I+YGIS + L+  L IPR +A ++I RY   F G+ +Y+E      RQN YV
Sbjct: 711 QAKAVNFGIVYGISDYGLSQNLNIPRKKAKEFIDRYLEEFQGVKDYMETIVAEARQNDYV 770

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+F RR +  EI+S   +IR+  ER A+N+PIQG+AADI + AMI + + L +     K
Sbjct: 771 ETLFHRRRYLPEIHSSNFNIRSFAERTAMNSPIQGTAADILKVAMIELDRELTERNFQAK 830

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LLQ+HDEL+FEVPEEE+ +   ++   ME A    ++L VPLK +  + NNW E
Sbjct: 831 LLLQVHDELIFEVPEEEVESLQSLVEEVMENA----VSLSVPLKADSNIGNNWYE 881



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 157/281 (55%), Gaps = 10/281 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L LVDGSS  +RAFY+   L+R    +GL  NA+  F  M   +L+        +H  V 
Sbjct: 5   LLLVDGSSLAFRAFYSILDLNRFKNQNGLHTNALYSFHRMFKTILEQEN----PTHVLVA 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    TFR E+Y +YK  R K P     Q+P   +   A+GIP   +  +EADDII T 
Sbjct: 61  WDAGKTTFRTEMYAEYKGGRAKTPSEFKEQMPYFNVLLDAWGIPHYRLNQYEADDIIGTL 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----VIKKWGIPPEKMV 180
            Y A KEGF V ++S DKDL+QL +P   +  T K     +E+    + +K+G+ PE+++
Sbjct: 121 AYQASKEGFEVVVLSGDKDLIQLATPEITVKITTKGVSELVEYTPAFINEKYGLTPEQII 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GDS DN PG+  +G KTA  LLQEYG++E I  +   +K+ K ++N+++  E A
Sbjct: 181 DMKGLMGDSSDNYPGVTKVGEKTAIKLLQEYGSVEGIYEHVEEMKKSKLKDNLIQDKELA 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
            LS+ L  +  + P+ I +   + ++ +   LI F K + F
Sbjct: 241 FLSKTLARIDINSPLEITVADTLRKEESIEELIDFYKEMSF 281


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 360/623 (57%), Gaps = 25/623 (4%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +Q  +  D Y  I+  +D+++   +LE   + +F   T  +D   ++ + I+IS L   +
Sbjct: 282 AQATLQTDQYHCILTNEDLEKLALRLEAAPAFAFDTETTGLDPRTAELVGISIS-LQAHE 340

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V   ++ +     +++         +L  L+  F N    K+G N+K+D  +L  
Sbjct: 341 AFYIPVGHRYLGMPDQLPRET---------VLERLRPAFGNPAIRKVGQNLKFDLQILAV 391

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
            G+ ++G + D ML SY+L+  R  H + ++AQ+ L++   +  E+  S K+ I   ++ 
Sbjct: 392 AGLEVQGSWCDTMLCSYLLNPSRGGHGLDALAQEHLNHKMISYDEVTGSGKNRICFSEVE 451

Query: 535 DSQVQEHAIENSNVILQLWLL---LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             +   +A E+++     WLL   L P L  + L  +   L+ P+++++++ME  G+ +D
Sbjct: 452 VEKATRYAAEDADAT---WLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLD 508

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L ++     + +  LE+ I +L+G  FNL+SPKQL ++LF +L   +G KTK    +
Sbjct: 509 LAYLAELGNGFGQRMQELEKRIIELAGGPFNLNSPKQLEEVLFERLGLQAGKKTKGKTGR 568

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T  ++      ++ I K +L++R L+K+KSTY D+L   +  R  RVHT Y+ A T TG
Sbjct: 569 STDNEVLTGLAEEHEIAKLLLDYRGLTKLKSTYTDALAK-LTDRQGRVHTSYNQAVTATG 627

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+TD G++IR AFI+PP   +++ADYSQIELR+LAH+++       F
Sbjct: 628 RLSSSDPNLQNIPIRTDEGRRIREAFIAPPGCVILAADYSQIELRVLAHLSQDPVFCDAF 687

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   A+E+FG+  E V+ +MRR AKTINF IIYG   F LA QL + R+ A  +
Sbjct: 688 SQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQGAFSLAKQLGVARNVAEKF 747

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y  R  G   +++      ++ GYV TI GR++   +I S   ++R+  ER AIN P
Sbjct: 748 IAAYKERHSGAIAFLDSCIASAKETGYVTTILGRKLPIADITSSNGNLRSFAERNAINYP 807

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI ++AM+ V +++    L +++++Q+HDELVFEV E E+    +++   M +A
Sbjct: 808 IQGSAADIIKQAMLGVDRAIRAEGLQSRLIMQVHDELVFEVLETELEQMRELVNREMSQA 867

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L+VPLKV+I+   NW E
Sbjct: 868 ----VALKVPLKVDIQWGKNWSE 886



 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 120/284 (42%), Positives = 176/284 (61%), Gaps = 6/284 (2%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L+L+DGSS++YRA++A   LS    G P NAI GF  ML KLL++ +      H A++
Sbjct: 3   NTLYLIDGSSYLYRAYFAIKRLSSP-SGFPTNAIYGFTQMLLKLLKDYQPH----HVAMV 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   VTFR E+YP YKANR ++P+ L  Q+  +R   +AF IP +E+QG+EADD+I T 
Sbjct: 58  FDVGRVTFRTELYPAYKANRAEMPDDLRQQIGPIRDLVRAFNIPVVELQGYEADDLIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               E  G  V +++ DKDLMQ+V+  T L DT+K     I  V +++G+ PE ++ +  
Sbjct: 118 AARWEATGGQVVVVTGDKDLMQIVTEQTTLLDTMKNVTSAIPQVHERFGVGPEGVIDILG 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PGIG KTA  L+Q++G+++N+L  A+ +   K  E + E++E ARLSR
Sbjct: 178 LAGDSSDNIPGVPGIGEKTAIKLVQQFGSMDNLLERAAEVP-GKVGEKLREFSEQARLSR 236

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            L  +  DVP  +  + L+ ++ +  RL    K   F  LI  +
Sbjct: 237 TLATIIKDVPYELHPDQLLAQEPDTERLNELFKLYGFHTLIKEM 280


>gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 875

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/552 (40%), Positives = 327/552 (59%), Gaps = 19/552 (3%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           FI L++H+ Q +      T E     +++ E+    K+ ++ K   + ++R G ++ G  
Sbjct: 332 FIGLAIHSDQGTYFFTKETAENSVSFREWVESAQ-TKVVYDAKKTMVAMNRMGFAISGIT 390

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541
            DIML SY+L+   S  D  S+A +   YT  E       K  K S P     +S V  H
Sbjct: 391 FDIMLASYLLNPSDSIDDFTSVAVRH-DYTEVETDEAVYGKGAKRSTP----EESIVAGH 445

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +  I +L   L   L   + L + E L+ P+  V++QME+ G+ +D + L+ +  E
Sbjct: 446 LARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTERLENMKVE 505

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++  L +LE +I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG + T A  LE + 
Sbjct: 506 LAGRLKTLETSIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL- 563

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQ
Sbjct: 564 SGKHDIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R +A D+I RYF  +P
Sbjct: 684 TAMDVFHVEQEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYP 743

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY+     F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI 
Sbjct: 744 AVKEYMHDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 803

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI + + LE  +L  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L V
Sbjct: 804 KKAMILMSERLESEQLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 859

Query: 961 PLKVNIKVSNNW 972
           PLKV+    + W
Sbjct: 860 PLKVDSAFGDTW 871



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/289 (39%), Positives = 160/289 (55%), Gaps = 10/289 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + P +++
Sbjct: 117 TKQAEADGLEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPTQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           A LS++L  +  + PI   +E    +     ++I  LK + FT L+  +
Sbjct: 237 AVLSKELATINVNSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 285


>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR]
 gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
          Length = 886

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/508 (41%), Positives = 312/508 (61%), Gaps = 24/508 (4%)

Query: 467 HNIKYDKLVLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H+ K   ++L R G   +R   D ML +Y+LD   S+ D+A+++ K+L            
Sbjct: 393 HDAKRTDILLRRLGNKPVRAGFDTMLAAYLLDPSVSNLDLAALSIKYLG----------- 441

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
                 ++S  +        +++IL+L  +L  KL    +L +Y  ++ P++ +++ ME 
Sbjct: 442 -----QELSPGEDYRSFCAQADIILRLVPVLHEKLAELNMLDLYFDVEMPLLHILADMEF 496

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           +G+++D++ L+ +S ++S  +  +  +IY L+GE+FN++S +QLG ILF KL  P   KT
Sbjct: 497 SGVKLDKEYLEAMSVDLSTEIDRITGDIYRLAGEEFNINSTRQLGTILFEKLGLPVIKKT 556

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T  + LE +    + I+  +L +RQL K+KSTY D L   IN  T +VHT ++ 
Sbjct: 557 KTG-YSTDVEVLETL-AERHEIVARVLHYRQLVKLKSTYVDGLIPLINPVTGKVHTTFNQ 614

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S EPNLQNIPI+ + G++IR+AF+ S P   ++SADYSQIELRILAH++  
Sbjct: 615 TVTATGRLSSTEPNLQNIPIRMEEGRRIRKAFVPSEPGWIILSADYSQIELRILAHLSGD 674

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
               Q F N  DIH   AAE+FGV++E+V+ +MR  AK +NF I+YGIS F LA  + + 
Sbjct: 675 ERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAVNFGIVYGISDFGLAKNISVS 734

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  YI+ YF R+ GI +Y+E+T    R+ GYV T+  RR +  +I SP  +IR+  E
Sbjct: 735 RKEARQYIENYFARYAGIKKYLEETVRLAREQGYVTTLLNRRRYLPDILSPNRNIRSFGE 794

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N PIQGSAADI + AM+ V   L+   L  +MLLQ+HDEL+FE P EE+   + I+
Sbjct: 795 RTAMNTPIQGSAADIIKLAMVRVADCLKKEGLKARMLLQVHDELIFEAPPEELPKVTGIV 854

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
              ME      + L VPLKV++K   NW
Sbjct: 855 RECMENT----VKLTVPLKVDMKKGFNW 878



 Score =  217 bits (552), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 117/285 (41%), Positives = 173/285 (60%), Gaps = 10/285 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +    ++DG+S +YRAFYA PLL +   G+  NA+ GF  ML K+L   +     +  A+
Sbjct: 3   QGKFIIIDGNSLVYRAFYALPLL-KTTTGVYTNAVYGFTTMLMKVLNEEK----PACLAI 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRNE + DYK +R   P+ L PQ PLV+   +AF IP  EI+G+EADDII T
Sbjct: 58  AFDKGKTTFRNEHFEDYKGHRKATPDELKPQFPLVKEIVRAFRIPVYEIEGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  AE+ G+   I++ D+D +QLVSP T +  T K     E  D   V +++G+ P ++
Sbjct: 118 VSLKAEEMGYETVIVTGDRDALQLVSPKTRVMLTKKGISEMELYDENKVAERYGLKPAQI 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+PGIG KTAA L++EYG++E +L     +   K RE + +YAE 
Sbjct: 178 IDMKGLMGDTSDNIPGVPGIGEKTAAKLVREYGSVEELLAQRGTV-AGKLREKLEQYAEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           A LS+KL  +   VPI I L   ++E+ +  +L+   ++LEF  L
Sbjct: 237 ALLSKKLATIIRHVPIEIDLRECVVEEPDYAKLLELGRSLEFKAL 281


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 334/528 (63%), Gaps = 10/528 (1%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507
           +L  +K+  E+E   KIGH+IK++    + + I M+    D M+  Y++D  +SS+ +  
Sbjct: 372 LLIQIKEVLEDEEIHKIGHDIKHEIRHFYVHDIEMKNVTFDTMIGEYLIDPAKSSYALKD 431

Query: 508 IAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +A +++     + +E+    K+ I I +     + ++  +  +VI +++  ++ K+   +
Sbjct: 432 LAAQYIGQEVMSEEELRGKGKNLISIGEAPKEDLMKYLCQRVSVIGKIYPEIKAKMQELE 491

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +Y  ++ P+++V++ ME  GI++D+ +L+ +  E  + +  L + I++L+   FN++
Sbjct: 492 LEKLYYEVELPLVEVLAAMEYKGIKVDRSMLEILEIEFGEQIDLLTKAIHELAETNFNIN 551

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG++LF KL+ P   KTKTG + T A+ LE++    + II  ILE+RQ++K+KSTY
Sbjct: 552 SPKQLGEVLFEKLELPPIKKTKTG-YSTNAEVLEKLQ-DQHDIIPKILEYRQVTKLKSTY 609

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D L N IN  T R+H+ ++   T TGR++S EPNLQNIPIK ++G+++R+ F++    +
Sbjct: 610 VDGLLNIINPETGRIHSNFNQTVTTTGRISSTEPNLQNIPIKLEMGRRLRKVFVANENHQ 669

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            I ADYSQ+ELR+LAHI +   L   F  + DIH   AAEIF V +E+V+  MR  AK +
Sbjct: 670 FIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTDSMRSSAKAV 729

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  YI  Y  ++P +  Y+++      Q GYV T+F 
Sbjct: 730 NFGIVYGISDYGLSQNLNITRVKAKKYIDNYLDKYPSVKRYMDEIVEQAHQQGYVVTLFN 789

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  E+ S   +IR+  ER A+N PIQGSAADI + AM++V++ L++  L +K++LQ+
Sbjct: 790 RRRYLPELKSRNFNIRSFGERMAMNTPIQGSAADIIKIAMVNVYRRLKEQGLTSKLILQV 849

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+ E P+ E+  A +I+  SME+A    +NL+V LKV++  +NNW
Sbjct: 850 HDELIVEAPDNEVEVAIKIVRESMEEA----MNLKVQLKVDLAYANNW 893



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/286 (38%), Positives = 168/286 (58%), Gaps = 9/286 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DG+S I RAFYA P L+ K +G   NAI GF  ML K++ +   + I+    V FD
Sbjct: 6   MVIIDGNSLINRAFYALPPLTNK-EGQHTNAIYGFMTMLLKVMDDYDPQYIS----VAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ +  YKA R K+P  L  QL  ++    AF I  +EI GFEADD+I T + 
Sbjct: 61  RKAPTFRHKSFEGYKAGRKKMPPELAEQLEPLKEVLDAFHIYRVEIDGFEADDLIGTLSK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE++     I++ DKD +QL S    +  T K     E  D + +++++ + PE+ + L
Sbjct: 121 YAEEQDIECLIVTGDKDALQLASEKVKILFTKKGISSLEIYDPQKIMEQYEVTPEQFIDL 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DNIPGIPG+G KTA  LL+++G +EN++ NA  I  +K RE +    E A +
Sbjct: 181 KGLMGDNSDNIPGIPGVGEKTAIKLLKQFGTVENLIQNAGEISAQKLREKVENNTEQAMM 240

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           S++L  + T+VP+ I LE L     +  ++++  K  EF  LI RV
Sbjct: 241 SKRLATIMTNVPVEIELEKLKKIAIDEEKVLALFKKFEFNTLIGRV 286


>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
          Length = 831

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/409 (46%), Positives = 276/409 (67%), Gaps = 7/409 (1%)

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            ++  ++ P+  V++QME TGIQ+D++ LK++S E+ + +  L   IY L+GE+FNL+SP
Sbjct: 427 RLFYEIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLAGEEFNLNSP 486

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           +QLG ILF KL  P   KTKTG + T A+ LE++    + II  IL +RQL K+KSTY D
Sbjct: 487 RQLGVILFEKLGLPVIKKTKTG-YSTDAEVLEEL-LPFHEIIGKILNYRQLMKLKSTYTD 544

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            L   IN+RT ++HT ++   T+TGRLAS EPNLQNIPI+ +LG+K+R+ FI SP    +
Sbjct: 545 GLMPLINERTGKLHTTFNQTGTLTGRLASSEPNLQNIPIRLELGRKLRKMFIPSPGYDYI 604

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           +SADYSQIELR+LAH ++   L + ++   DIHR  A+E+FGV++E+V+P+MR HAK++N
Sbjct: 605 VSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLEEVTPEMRAHAKSVN 664

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS F L   L+IPR  A  YIK YF  +P + EY+++     R+ GYV T+FGR
Sbjct: 665 FGIVYGISDFGLGRDLKIPREVAGKYIKNYFANYPKVREYLDELVRTAREKGYVTTLFGR 724

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  E++S   +++   ER A+N P+QGSAADI + AMI+V K L+  KL +++LL +H
Sbjct: 725 RRYIPELSSKNRTVQGFGERTAMNTPLQGSAADIIKLAMINVEKELKARKLKSRLLLSVH 784

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DELV EVP EE+     ++   ME      + L+VPL   +    NW E
Sbjct: 785 DELVLEVPAEELEEVKALVKGVMESV----VELKVPLIAEVGAGKNWYE 829



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 167/284 (58%), Gaps = 10/284 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDG+S ++RAF+A P L +   G P  A+ GF  ML++++++ + E    + AV FD  
Sbjct: 6   LVDGNSLLHRAFFALPPL-KTTKGEPTGAVYGFLTMLFRVIKDEKPE----YLAVAFDIS 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR E +  YK +R + P+ L+PQ  LVR   +   +P IE+ G+EADDII   +   
Sbjct: 61  RKTFRTEQFTAYKGHRKEAPDELVPQFALVREVLKVLNVPYIELDGYEADDIIGHLSRAF 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184
             +G  V I + D+D++QLV   T +Y T K      K+D+  +++ +G+ P+++V ++ 
Sbjct: 121 AGQGHEVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLVDVKG 180

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD  DNIPG+PGIG KTA  L++ YG++E +L +   +K  K RE + E+   A++S+
Sbjct: 181 LMGDPSDNIPGVPGIGEKTALDLIKTYGSVEEVLAHKDELK-PKLREKLAEHENLAKISK 239

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +L  +  ++P+ I LE L +++ N   +      LEF   +  +
Sbjct: 240 QLATILREIPLEISLEDLKVKEPNYEEVAKLFLRLEFKSFLKEI 283


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/620 (35%), Positives = 366/620 (59%), Gaps = 38/620 (6%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-E 425
            Y  + +  + ++ V+KL+   S +  + T ++D F      I++S         FK  E
Sbjct: 297 GYRIVKDPVEFEKLVEKLKETPSFAIDLETSSLDPFDCDIAGISVS---------FKPKE 347

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484
             +I L    +Q     N   KE+L  LK+  E+     +G N+K+D  VL   G+  + 
Sbjct: 348 AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVP 402

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKS--------SIPIDKIS 534
              D M+ +Y+++      ++  +A K+L Y  T  + L S  S         +P++K +
Sbjct: 403 PHFDTMIAAYLIEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFVDVPLEKAA 462

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +     ++ E++++  +L+  L  KL    L +V+ +++ P++ V+++ME+ G+ +D + 
Sbjct: 463 N-----YSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEF 517

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           LK++S E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG + T 
Sbjct: 518 LKKLSEEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTR 577

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++  G++ II  ILE+R++ K+KSTY D+LP  +N +T R+H  ++   T TGRL
Sbjct: 578 IEVLEEL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRL 636

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE
Sbjct: 637 SSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFE 696

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +D+H + A+ IF V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L +P  EA   I
Sbjct: 697 EGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMI 756

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + +YI++  +  ++ GYV T+FGR+    ++ +   + +   ER AIN PI
Sbjct: 757 VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPI 816

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI + + L++ K+ +KM++Q+HDELVFEVP+EE     +++   M    
Sbjct: 817 QGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEEKDALVELVKDRM---- 872

Query: 953 LPKINLRVPLKVNIKVSNNW 972
           +  + L VPL+V++ +   W
Sbjct: 873 MNVVKLSVPLEVDVTIGKTW 892



 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 156/261 (59%), Gaps = 6/261 (2%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG++  YRA+YA         G+P NA  G   ML + +++        + AV F
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSAGIPTNATYGVARMLVRFIKDHIIVG-KDYTAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++   YKA RPK P++L+ QLP ++   +A G+  +EI+G+EADDIIAT  
Sbjct: 62  DKRAATFRHKLLETYKAQRPKTPDLLIQQLPYIKRLVEALGMKVLEIEGYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                    + I++ DKD++QLV+    ++  VK     E  D + V +K+G+ P ++  
Sbjct: 122 VKGLSLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPHQIPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L ALTGD IDNIPG+ GIG KTA  LL++Y +LE+IL +   + QK R+  +L   E+A 
Sbjct: 182 LLALTGDEIDNIPGVTGIGEKTAVQLLEKYKDLEDILNHVRELPQKLRK-ALLRDRESAV 240

Query: 242 LSRKLVMLRTDVPITIPLEHL 262
           LS+KL +L T+VPI I  E L
Sbjct: 241 LSKKLAILETNVPIEINWEEL 261


>gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
 gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
 gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
          Length = 875

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/496 (43%), Positives = 301/496 (60%), Gaps = 33/496 (6%)

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           ++  ED+ LM Y L +G S  ++            KE+LK            ++ ++   
Sbjct: 407 IKAIEDLELMQYALSAGLSQKNLF-----------KEVLK------------ETWIENII 443

Query: 543 IENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           IE++ +++    L +    +L   K   +Y  +D P+  ++ +ME  GI +D + LKQ+S
Sbjct: 444 IESAKIVINFITLYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLS 503

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLE 658
           AE    +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A  K   + T A+ LE
Sbjct: 504 AEFGTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILE 563

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +++     I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+S EP
Sbjct: 564 KLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEP 623

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQN+PI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N  DIH
Sbjct: 624 NLQNVPIRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA+ YIK+YF  
Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTHGEASAYIKKYFAE 743

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           + G+ EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG+ AD
Sbjct: 744 YKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNAD 801

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +     N+
Sbjct: 802 IIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NM 857

Query: 959 RVPLKVNIKVSNNWQE 974
            VP+   I+  NNW E
Sbjct: 858 DVPIITEIRAGNNWME 873



 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/294 (41%), Positives = 176/294 (59%), Gaps = 7/294 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+YA  PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+G   +K+
Sbjct: 115 IIATFATKTAALGEHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+R+ +    ET
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRKTLQNSRET 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D
Sbjct: 235 ALISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/620 (35%), Positives = 364/620 (58%), Gaps = 38/620 (6%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-E 425
            Y  + +  + ++ V+KL+   S +  + T ++D F      I++S         FK  E
Sbjct: 297 GYRIVKDPVEFEKLVEKLKETPSFAIDLETSSLDPFECDIAGISLS---------FKPKE 347

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484
             +I L    +Q     N   KE+L  LK+  E+     +G N+K+D  VL   GI  + 
Sbjct: 348 AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGIEPVP 402

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKS--------SIPIDKIS 534
              D M+ +Y+++      ++  +A K+L Y  T  + L S  S         +P++K +
Sbjct: 403 PHFDTMIAAYLIEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFVDVPLEKAA 462

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +     ++ E++++  +L+  L  KL    L +V+ +++ P++ V+++ME+ G+ +D + 
Sbjct: 463 N-----YSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEF 517

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           LK++S E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG + T 
Sbjct: 518 LKKLSEEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTR 577

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++  G++ II  ILE+R++ K+KSTY D+LP  +N +T R+H  ++   T TGRL
Sbjct: 578 IEVLEEL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRL 636

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE
Sbjct: 637 SSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFE 696

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +D+H + A+ IF V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L +P  EA   I
Sbjct: 697 EGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMI 756

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + +YI++  +  ++ GYV T+FGR+    ++ +   + +   ER AIN PI
Sbjct: 757 VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPI 816

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI + + L++ K+ +KM++Q+HDELVFEVP EE     +++   M    
Sbjct: 817 QGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVKDRMTNV- 875

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              + L VPL+V++ +   W
Sbjct: 876 ---VKLSVPLEVDVTIGKTW 892



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 156/261 (59%), Gaps = 6/261 (2%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG++  YRA+YA         G+P NA  G   ML + +++        + AV F
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSAGIPTNATYGVARMLVRFIKDHIIVG-KDYAAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++   YKA RPK P++L+ QLP ++   +A G+  +EI+G+EADDIIAT  
Sbjct: 62  DKRAATFRHKLLETYKAQRPKTPDLLIQQLPYIKRLVEALGMKVLEIEGYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                    + I++ DKD++QLV+    ++  VK     E  D + V +K+G+ P ++  
Sbjct: 122 VKGLSLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPHQIPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L ALTGD IDNIPG+ GIG KTA  LL++Y +LE+IL +   + QK R+  +L   E+A 
Sbjct: 182 LLALTGDEIDNIPGVTGIGEKTAVQLLEKYRDLEDILNHIHELPQKTRK-TMLRDRESAI 240

Query: 242 LSRKLVMLRTDVPITIPLEHL 262
           LS+KL +L T+VPI I  E L
Sbjct: 241 LSKKLAILETNVPIEINWEEL 261


>gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 849

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/511 (41%), Positives = 308/511 (60%), Gaps = 33/511 (6%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           LKI H+ +  +  +      +   +D+M+MSY LD+G+  H I +I    LS   +    
Sbjct: 364 LKIIHDTRETRKTIPTIEKVLGSVDDLMIMSYSLDTGKHDHSIPNIIAHNLSENVETF-- 421

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           S K+ I I +                       L+ +L  EKL  +YER DKP++ V+  
Sbjct: 422 SAKTLIAIHE----------------------KLKQRLFKEKLFTIYERFDKPLMKVIFN 459

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI ++   L+++S +  + +  LE +IY+L+GEKFN++SPKQL D+LF K+     
Sbjct: 460 MEKNGILLNIHKLQELSDKFQQLIAVLENDIYNLAGEKFNIASPKQLSDVLFNKMGLNKK 519

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            K K+G + T +  LE++      I   IL+WR LSK+KSTY D+L   ++    R+HT 
Sbjct: 520 KKLKSGSYSTNSVVLEELEIEGVEIASKILDWRHLSKLKSTYTDALIKQVDPLDGRIHTN 579

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           +S   T TGRL+S  PNLQNIPI++  G  IR+ FI+P   K+ISADYSQIELR+LAH+A
Sbjct: 580 FSTTVTATGRLSSSSPNLQNIPIRSKEGNLIRQTFIAPKGYKIISADYSQIELRLLAHVA 639

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQL 821
            +T   + F N  DIH + A ++FGV  + +V  Q+RR AK+INF I+YGIS F LA +L
Sbjct: 640 NVTAFKEAFANGKDIHGITAGQVFGVQKDMEVDEQLRRKAKSINFGIMYGISQFGLAKRL 699

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I   EAA+YI  YF  +P I  Y+EK  +  RQ+GYVET+FGRR    +IN+    +R 
Sbjct: 700 GITIEEAAEYINYYFSCYPEIKVYMEKVVSTARQHGYVETLFGRRCFVKDINNTIPYLRQ 759

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ERAAINAP+QG+AADI + AMI +   L+    A K++LQ+HDEL+ EV  E++   +
Sbjct: 760 FAERAAINAPLQGTAADIIKCAMIQLFDQLK----AGKIILQVHDELLVEVENEKVQETA 815

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +++   ME      + + +PL+V +K+S+NW
Sbjct: 816 KLMKDVMENI----VKISIPLEVEVKISDNW 842



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 172/289 (59%), Gaps = 9/289 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQK+    ++DG  F++ A+Y    L+    G+P+ A+ GF NM+ K + +S       +
Sbjct: 1   MQKKT-FTIIDGYGFLFGAYYVLHHLTTT-TGMPIGAVYGFLNMVLKYITHS------DY 52

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             +  D     FR+++YP+YKANR   PE L+PQ  ++R A +AF +   EI+G+EADDI
Sbjct: 53  LTIALDSGKKNFRHDLYPEYKANRVTPPEGLIPQFTILREAIEAFNLSYEEIEGYEADDI 112

Query: 121 IATYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IAT T   A  +   V IIS+DKDL QL++    ++D +K   ID + VI+K+G+   K+
Sbjct: 113 IATLTAKYANHQDLKVVIISSDKDLFQLLNYDVLIFDPIKNIYIDEKQVIEKFGVNSNKL 172

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L +LTGD  DNIPG+PGIG KTAA LL  + +L N + N + IKQ + R  + E+ E 
Sbjct: 173 LDLFSLTGDVSDNIPGVPGIGPKTAAKLLDRFNSLNNTIENINNIKQTRTRNILTEHKEK 232

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           A +SRKL+ L   V +   +    +   N  +L+SFLK  EF  LI +V
Sbjct: 233 ALISRKLLSLCEKVDLQHDVIKYKVLSPNMEKLLSFLKKYEFNSLIGKV 281


>gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171]
          Length = 567

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/552 (41%), Positives = 326/552 (59%), Gaps = 19/552 (3%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           FI L++H+ + +      T E     K++ E++   K+ ++ K   + +HR G ++ G  
Sbjct: 24  FIGLTIHSDKGTYFFTKETAENSPAFKEWVESDAS-KVVYDAKKTMVAMHRLGYTVSGIT 82

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541
            DIML SY+L+   S  D  S+A +   YT  E       K  K S P     +S V  H
Sbjct: 83  FDIMLASYLLNPSDSIADFTSVAIRH-DYTEVETDEAVYGKGAKRSTP----EESIVAPH 137

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +  I  L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ +  E
Sbjct: 138 LARKAVAIAVLEKRLLDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVE 197

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL  P+  KTKTG + T A  LE + 
Sbjct: 198 LAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL- 255

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQ
Sbjct: 256 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 315

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH  
Sbjct: 316 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 375

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R +A D+I RYF  +P
Sbjct: 376 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYP 435

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY++    F ++ GY ETI  RR +  EI S   ++R   ER A+N PIQGSAADI 
Sbjct: 436 AVKEYMQDIVRFAKEKGYXETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 495

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI +   L+  KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L V
Sbjct: 496 KKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 551

Query: 961 PLKVNIKVSNNW 972
           PLKV+    + W
Sbjct: 552 PLKVDSAFGDTW 563


>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
 gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
 gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
          Length = 922

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/518 (42%), Positives = 305/518 (58%), Gaps = 38/518 (7%)

Query: 487 EDIMLMSYVLDSGRSSH-------------------------DIASIAQKWLSYTRKEIL 521
           ED+ LM Y L +G S                           D  ++A       R++  
Sbjct: 411 EDLELMQYALSAGLSQKNLFEEALKEDNRHLSKPAYREEFKGDTEALATAAYKSVREDAS 470

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMI 577
               S +P++  +      + I  S  I+  +  L  + I+E    K   +Y  +D P+ 
Sbjct: 471 TGSTSKLPLE--TKFGKMSNVINESARIVAEFTSLYKQNILELKDNKAFRLYSNIDLPIC 528

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++ +ME  GI++D + L Q+SAE    +L LEE I+ LSG KFN+ SPKQLG+ILF K+
Sbjct: 529 FILDKMEKIGIKVDANYLNQLSAEFGAEILKLEEEIFALSGTKFNIGSPKQLGEILFEKM 588

Query: 638 KFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           + P G A  K   + T A+ LE+++     I   +L WRQL+K+K+TY DSLP  I+  T
Sbjct: 589 QLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNIT 648

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT +   ST TGRL+S EPNLQN+PI++  G KIR+AFI+    KLISADYSQIELR
Sbjct: 649 HRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYKLISADYSQIELR 708

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           IL+HIA I  L Q F N  DIH   A +IF +   +++ + RR AK INF IIYGIS F 
Sbjct: 709 ILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFG 768

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL +   EA++YIK+YF  + G+ EY+E+TK F   NGYV   FGR+     I+  K
Sbjct: 769 LAKQLNVSNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVINFFGRKCFVPLIHDKK 828

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             ++   ERAAINAPIQG+ ADI + AMI++ + +E + L T+++LQIHDEL+FEVPE+E
Sbjct: 829 --LKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKNNLKTRLVLQIHDELLFEVPEDE 886

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   + II   ME +     N+ VP+   I+V NNW E
Sbjct: 887 VELVTPIIKKIMENST----NMDVPIITEIRVGNNWME 920



 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/321 (39%), Positives = 186/321 (57%), Gaps = 8/321 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+YA  PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFASMLLKLLSDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR+ IYP+YKANRP  PE L+ QLPLVR        P +E  G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V +IS+DKDL+QL+     +YD +K + I  + V+KK+G   +K+
Sbjct: 115 IIATFAAKTAALGEDVVVISSDKDLLQLMGENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E 
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLEQVSSLKQRETLQNSKEA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  R    +D    + 
Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFKSLYKRAENLFDIKINDH 294

Query: 300 EPVVLDINTTENKGIAIETEI 320
           + +V +   TE K I+  +E+
Sbjct: 295 KEIVEN-KVTEAKEISNASEL 314


>gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
 gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
          Length = 875

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/552 (41%), Positives = 326/552 (59%), Gaps = 19/552 (3%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           FI L++H+ + +      T E     K++ E++   K+ ++ K   + +HR G ++ G  
Sbjct: 332 FIGLTIHSDKGTYFFAKETAENSPAFKEWIESDAS-KVVYDAKKAMIAMHRLGYAVSGIT 390

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541
            DIML SY+L+   S  D  S+A +   YT  E       K  K S P     +S V  H
Sbjct: 391 FDIMLASYLLNPSDSIDDFTSVAIRH-DYTEVETDEAVYGKGAKRSTP----EESVVAPH 445

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +  I  L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ +  E
Sbjct: 446 LARKAVAIAILEKRLLDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVE 505

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++  L +LEE+I+ L+ E+FN++SPKQLG ILF KL  P+  KTKTG + T A  LE + 
Sbjct: 506 LAGRLKTLEESIHSLAEEEFNINSPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL- 563

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQ
Sbjct: 564 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 623

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH  
Sbjct: 624 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R +A D+I RYF  +P
Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYP 743

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI 
Sbjct: 744 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 803

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI +   L+  KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L V
Sbjct: 804 KKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 859

Query: 961 PLKVNIKVSNNW 972
           PLKV+    + W
Sbjct: 860 PLKVDSAFGDTW 871



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/309 (37%), Positives = 170/309 (55%), Gaps = 10/309 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHATFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + P +++
Sbjct: 117 TKKAEADGLEVAIITGDRDLTQLASDKTTVYITKKGIADMETNTPETLKEKYNLTPAQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+ G++E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGSVESVLEHADEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D PI   +E    +     ++I  LK ++FT L+  +      +A  +
Sbjct: 237 AILSKELATINVDSPIECTIESTKYDGYQTEKVIPLLKEMQFTTLLKNIEGDTPEEAKEL 296

Query: 300 EPVVLDINT 308
           + +  ++ T
Sbjct: 297 KELTFEVVT 305


>gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
 gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
          Length = 879

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/528 (41%), Positives = 331/528 (62%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K++ E+E   K   + K   + L   GI ++G E D++L +Y+++ G S  D+AS+A++
Sbjct: 360 FKEWAEDESKKKWVFDAKRAAVALRWRGIELKGAEFDVLLAAYIINPGHSYDDVASVAKE 419

Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
                +S       K  K ++P +K    ++ +H    +  I  L   L  +L   + L 
Sbjct: 420 HQLHIVSADEAVYGKGAKQAVPDEK----ELADHLARKAKAISLLREKLLDELEENEQLE 475

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++E L+ P+  ++ +ME  G+Q+D D LK++  E+S  L   E+ I++ +GE FN++SPK
Sbjct: 476 LFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHESAGETFNINSPK 535

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+A  LE++    + II++IL +RQ+ K++STY + 
Sbjct: 536 QLGVILFEKLGLPVVKKTKTG-YSTSADVLEKLR-DKHVIIEDILHYRQIGKLQSTYVEG 593

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   I K + +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P++K   
Sbjct: 594 LLKVIKKDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSQKGWL 651

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHI+K   L + F N +D+H   A ++F V+ E+V+P MRR AK +
Sbjct: 652 IFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAV 711

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R EAA +I+RYFH F G+ EY+E+T    +Q GYV T+  
Sbjct: 712 NFGIVYGISDYGLSQNLGITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLS 771

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  E+ S   ++R+  ER A+N PIQGSAADI ++AMI +   L++  L  K+LLQ+
Sbjct: 772 RRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMADKLKEKNLQAKLLLQV 831

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE PE+EI    +++   ME A    + L VPLKV+     +W
Sbjct: 832 HDELIFEAPEDEIKVLEKLVPEVMEHA----LELDVPLKVDCASGPSW 875



 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 169/292 (57%), Gaps = 9/292 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS +  G+  NA+ GF  +L K+L+  +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFTTILMKMLEEEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + +YK  R K P  L  QLP +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHKTFKEYKGGRQKTPPELSEQLPFIRELLDAYRISRYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V I S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKIFSGDKDLTQLATEGTTVAITKKGITDVEYYTPEHVREKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++  +E +L +   +  KK +E + E+
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHTVEELLSSIDEVSGKKLKEKLEEF 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            E A +S++L  + T+ P+ + L+ L  E  +   ++   K L F  L+ R+
Sbjct: 236 KEQALMSKELATITTEAPLEVSLDSLGYEGFDREAVVKIFKDLGFHSLLERI 287


>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
 gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
 gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
          Length = 875

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/492 (43%), Positives = 299/492 (60%), Gaps = 33/492 (6%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ED+ LM Y L +G S  ++            KE+LK            ++ ++   IE++
Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLK------------ETWIENIIIESA 447

Query: 547 NVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            +++    L +    +L   K   +Y  +D P+  ++ +ME  GI +D + LKQ+SAE  
Sbjct: 448 KIVINFIALYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEFG 507

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINC 662
             +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A  K   + T A+ LE+++ 
Sbjct: 508 TEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSE 567

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
               I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+S EPNLQN
Sbjct: 568 HGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQN 627

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           +PI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N  DIH   A
Sbjct: 628 VPIRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA++YIK+YF  + G+
Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG+  DI + 
Sbjct: 748 QEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNTDIIKI 805

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +     N+ VP+
Sbjct: 806 AMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMAVPI 861

Query: 963 KVNIKVSNNWQE 974
              I+  NNW E
Sbjct: 862 ITEIRAGNNWME 873



 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 123/294 (41%), Positives = 175/294 (59%), Gaps = 7/294 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+YA  PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+G   +K+
Sbjct: 115 IIATFATKTAALGAHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E 
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D
Sbjct: 235 ALISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288


>gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580]
          Length = 879

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/528 (41%), Positives = 331/528 (62%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K++ E+E   K   + K   + L   GI ++G E D++L +Y+++ G S  D+AS+A++
Sbjct: 360 FKEWAEDESKKKWVFDAKRAAVALRWRGIELKGAEFDVLLAAYIINPGHSYDDVASVAKE 419

Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
                +S       K  K ++P +K    ++ +H    +  I  L   L  +L   + L 
Sbjct: 420 HQLHIVSADEAVYGKGAKQAVPDEK----ELADHLARKAKAISLLREKLLDELEENEQLE 475

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++E L+ P+  ++ +ME  G+Q+D D LK++  E+S  L   E+ I++ +GE FN++SPK
Sbjct: 476 LFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHESAGETFNINSPK 535

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+A  LE++    + II++IL +RQ+ K++STY + 
Sbjct: 536 QLGVILFDKLGLPVVKKTKTG-YSTSADVLEKLR-DKHVIIEDILHYRQIGKLQSTYVEG 593

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   I K + +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P++K   
Sbjct: 594 LLKVIKKDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSQKGWL 651

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHI+K   L + F N +D+H   A ++F V+ E+V+P MRR AK +
Sbjct: 652 IFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAV 711

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R EAA +I+RYFH F G+ EY+E+T    +Q GYV T+  
Sbjct: 712 NFGIVYGISDYGLSQNLGITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLS 771

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  E+ S   ++R+  ER A+N PIQGSAADI ++AMI +   L++  L  K+LLQ+
Sbjct: 772 RRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMADKLKEKNLQAKLLLQV 831

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE PE+EI    +++   ME A    + L VPLKV+     +W
Sbjct: 832 HDELIFEAPEDEIKVLEKLVPEVMEHA----LELDVPLKVDCASGPSW 875



 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 169/292 (57%), Gaps = 9/292 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS +  G+  NA+ GF  +L K+L+  +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFTTILMKMLEEEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + +YK  R K P  L  QLP +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHKTFKEYKGGRQKTPPELSEQLPFIRELLDAYRISRYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V I S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKIFSGDKDLTQLATEGTTVAITKKGITDVEYYTPEHVREKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++  +E +L +   +  KK +E + E+
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHTVEELLSSIDEVSGKKLKEKLEEF 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            E A +S++L  + T+ P+ + L+ L  E  +   ++   K L F  L+ R+
Sbjct: 236 KEQALMSKELATITTEAPLEVSLDSLGYEGFDREAVVKIFKDLGFHSLLERI 287


>gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
 gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/526 (39%), Positives = 326/526 (61%), Gaps = 15/526 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   EN   +K   NIK   ++L R GI ++G + D +L+SY+LD+  + +++A++AQ+
Sbjct: 373 LKSVIENAGIIKNVFNIKAQLILLKRLGIKLKGTKFDFLLVSYLLDTTDNDNELATLAQR 432

Query: 512 W-LSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           + L  T  E +  K  K +IP D   D++V  H    +++++Q+       L   +  H+
Sbjct: 433 FDLYMTSDEDIYGKGAKFAIPED---DARVLAHLANKADILMQVEQSAFDALQEHEQTHL 489

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y  ++ P+  V++ ME  GI+IDQ  L+ + +++   + ++E+ IY  +GEKFN++SPKQ
Sbjct: 490 YTEIELPLAQVLADMEYQGIKIDQKRLRDIGSDLEGRIHAIEDAIYIEAGEKFNINSPKQ 549

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG +LF K+  P   +TKTG   +TA D+ +      PI+ +IL++RQL+K+KSTY + L
Sbjct: 550 LGVLLFEKMGLPVVKRTKTGY--STAVDVLEKLAAQAPIVDHILQYRQLAKLKSTYVEGL 607

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
              ++ +  ++HT +    T TGRL+S++PNLQNIP++T+ G++IR AF+ S P  +++ 
Sbjct: 608 LTVVHDQDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRTEEGRQIRTAFVPSEPNWQIVG 667

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINF 806
           ADYSQIELR+LAH+     + + F N  DIH   A  +FG+  +  V   MRR AK +NF
Sbjct: 668 ADYSQIELRVLAHMTGDKNMQRAFLNGEDIHAETARAVFGLKDDAPVDALMRRTAKAVNF 727

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS F LA  L I R EA  +I  YF  FP IH ++ K K    + G+VETI  RR
Sbjct: 728 GIVYGISDFGLANNLGISRGEAKSFIDTYFKEFPQIHAWMAKIKEIAHEQGFVETIAKRR 787

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  EI S   ++R+  ER A+N+PIQGSAADI + AMI V  +L++H +  +MLLQ+HD
Sbjct: 788 RYLPEIGSKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVADALQEHHMQARMLLQVHD 847

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FE P +EI   ++++ + M+ A +    L VP++V     N W
Sbjct: 848 ELIFEAPIDEIQELTELVTNVMDSAVV----LDVPMRVESHYGNTW 889



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 163/292 (55%), Gaps = 15/292 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R   H GL  NA+  F N L +++     + +    AV
Sbjct: 5   LLLIDGNSLAFRAFYAMYNQLDRMISHKGLHTNALVAFNNFLDQIV-----DPMQPDLAV 59

Query: 64  I-FDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           + +D  +   TFR E++P+YK  R K P     Q P +R      G+   E  G EADDI
Sbjct: 60  VAWDAASGKETFRGELFPEYKDGRSKAPSEFKEQFPYLREMVALHGLRNYEQPGLEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I TY+ + E+ G+ V I++ D+DL QL +    +  T K     E+   +++++K+ + P
Sbjct: 120 IGTYSRLGEQAGYTVIIVTGDQDLTQLATDNITVNVTKKGVTEIERYTPDYIMEKFNLKP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++  +ALTGD+ DN PG+  +G KTA  LL EY +++N+  +   +KQ K ++N++  
Sbjct: 180 LQIIEKKALTGDTSDNYPGVTKVGEKTALKLLAEYHDIDNLYAHVDDMKQSKLKDNLIND 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            ++A  +RKL  + TD  + +PLE +     +   L++F + L+F K + ++
Sbjct: 240 RQSAFCARKLATILTDAHLALPLEEIEYRGIDYDNLVTFYENLDFKKQLAKI 291


>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
 gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
 gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
          Length = 856

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/528 (42%), Positives = 323/528 (61%), Gaps = 32/528 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506
           EI   ++    +E+  KIG  I+ D   LH     ++G   D+ L SY+L+  R +H + 
Sbjct: 358 EIRKKIENIISSENVKKIGSYIQRD---LHFLNCKIKGDVFDVSLASYLLNPERQNHSLD 414

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +  ++L+ T         S IP         Q++A      +  L  +L  ++  E L 
Sbjct: 415 ILIGEYLNKT---------SFIP---------QKYA----GYLFPLKSILEERIKNEGLE 452

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            V   ++ P+I V+  ME  GI++D++ LKQ+S E  + +  LEE IY+L+G +FNL+SP
Sbjct: 453 FVLYNIEIPLIPVLYSMEKWGIKVDKEYLKQLSDEFCERIKKLEEEIYELAGTRFNLNSP 512

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQL ++LF +LK PSG K KTG + T++  L+ +    +PI++ IL++R+L K+KSTY D
Sbjct: 513 KQLSEVLFERLKLPSGKKGKTG-YSTSSSVLQNL-INAHPIVRKILQYRELYKLKSTYVD 570

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
           ++PN +N +T RVHT ++   T TGR++S EPNLQNIPIK++ G+KIRRAF+S     L+
Sbjct: 571 AIPNLVNPQTGRVHTKFNPTGTATGRISSSEPNLQNIPIKSEEGRKIRRAFVSEDGYFLV 630

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           S DYSQIELRI+AH+++   L   F+   DIHR  A+EIFGV  E+V   +R  AK +NF
Sbjct: 631 SLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEEVDDLLRSRAKAVNF 690

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            IIYGIS F L+  + I   EA  +I  YF  +P +  +I+KT +  R+  YV+T+FGR+
Sbjct: 691 GIIYGISSFGLSETVSITPEEAEKFIDSYFKHYPRVKLFIDKTIHEAREKLYVKTLFGRK 750

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  EI S    +RN  ER AINAPIQG+AADI + AMI ++K +E+  L +++LLQIHD
Sbjct: 751 RYIPEIKSINKQVRNAYERIAINAPIQGTAADIIKLAMIEIYKEIENKNLKSRILLQIHD 810

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+ EVPEEE+     +    MEK     + L VPL V I V  N  E
Sbjct: 811 ELILEVPEEEMEFTPLMAKEKMEKV----VELSVPLVVEISVGKNLAE 854



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 124/218 (56%), Gaps = 11/218 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + ++DGSS IYR +YA P L  K+  L  NA+ GF  +L K +++   + +    
Sbjct: 17  ESKRKILIIDGSSLIYRVYYALPPLKTKNGEL-TNALYGFIRILLKAVEDFNPDLVG--- 72

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD P  TFR+ IY +YKA RP + + L  Q+P +R   +   IP +E  G+EADDII
Sbjct: 73  -VAFDRPEPTFRHVIYKEYKAKRPPMKDDLKAQIPWIREFLRLNDIPLLEEPGYEADDII 131

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKI-DIEHVIKKWGIPPE 177
           A  T + + +     I+S D DL+QLVS  T L      + E  I D + V  ++G+ P 
Sbjct: 132 A--TIVNKYKDDLKYILSGDLDLLQLVSDKTFLIHPQKGITEFTIYDPKAVKDRFGVEPY 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
           K+   + L GD  DNIPG+ GIG K A+ +L++  +++
Sbjct: 190 KIPLYKVLVGDESDNIPGVNGIGPKKASKILEKISSVD 227


>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
 gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
 gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
          Length = 875

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/492 (43%), Positives = 299/492 (60%), Gaps = 33/492 (6%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ED+ LM Y L +G S  ++            KE+LK            ++ ++   I ++
Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLK------------ETWIENIIIASA 447

Query: 547 NVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            +++    L +    +L   K   +Y  +D P+  ++ +ME  GI +D + LKQ+SAE  
Sbjct: 448 KIVINFIALYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEFG 507

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINC 662
             +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A  K   + T A+ LE+++ 
Sbjct: 508 TEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSE 567

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
               I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+S EPNLQN
Sbjct: 568 HGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQN 627

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           +PI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N  DIH   A
Sbjct: 628 VPIRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA++YIK+YF  + G+
Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG+ ADI + 
Sbjct: 748 QEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIKI 805

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +     N+ VP+
Sbjct: 806 AMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMAVPI 861

Query: 963 KVNIKVSNNWQE 974
              I+  NNW E
Sbjct: 862 ITEIRAGNNWME 873



 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/294 (41%), Positives = 175/294 (59%), Gaps = 7/294 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+YA  PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+G   +K+
Sbjct: 115 IIATFATKTAALGAHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E 
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D
Sbjct: 235 ALISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288


>gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali]
          Length = 875

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/493 (44%), Positives = 302/493 (61%), Gaps = 35/493 (7%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ED+ LM Y L +G S  ++            KE+LK            ++ ++   IE++
Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLK------------ETLIENIIIESA 447

Query: 547 NVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            +++  ++ L  + I+E    K   +Y  +D P+  ++ +ME  GI +D + LKQ+SAE 
Sbjct: 448 KIVIN-FISLYKQTILELKDNKTFRLYSDIDLPICFILDKMEKVGITVDANYLKQLSAEF 506

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQIN 661
              +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A  K   + T A+ LE+++
Sbjct: 507 GTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLS 566

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+S EPNLQ
Sbjct: 567 EHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQ 626

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N  DIH   
Sbjct: 627 NIPIRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQT 686

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A +IF +   +++ + RR AK INF IIYGIS F LA QL     EA++YIK+YF  + G
Sbjct: 687 ACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNATNGEASEYIKKYFAEYKG 746

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG+ ADI +
Sbjct: 747 VQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIK 804

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +     N+ VP
Sbjct: 805 IAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMDVP 860

Query: 962 LKVNIKVSNNWQE 974
           +   I+  NNW E
Sbjct: 861 IITEIRAGNNWME 873



 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/294 (41%), Positives = 173/294 (58%), Gaps = 7/294 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+Y   PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYTQQPLNSPK--GEPVGALYGFTSMLLKLLSDFKPQ---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR++IY DYKANRP  PE L+ QLPLVR        P +E  G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHQIYSDYKANRPPPPEDLIVQLPLVRDVAGNLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+G   +K+
Sbjct: 115 IIATFATKTAALGEHVVIISSDKDLLQLMTEHIKIYDPLKGKYITEDDVVKKFGTTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E 
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSIKQRETLQNSREA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D
Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLKWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288


>gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208]
          Length = 531

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/527 (41%), Positives = 319/527 (60%), Gaps = 19/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            +++ E+E   K+ ++ K   + ++R G+++ G   DIML SY+L+   S  D  S+A +
Sbjct: 13  FREWVESEQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVAVR 71

Query: 512 WLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
              YT  E       K  K S P + I  S +   A+     I  L   L   L   + L
Sbjct: 72  H-DYTEVETDEAVYGKGAKRSTPEESIVASHLARKAV----AIADLEKRLVADLEENEQL 126

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            + E L+ P+  V+++ME+ G+ +D + L+ +  E++  L +LEE+I+ L+GE+FN++SP
Sbjct: 127 ALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNINSP 186

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KL  P+  KTKTG + T A  LE +  G + II  IL +RQL KI+STY +
Sbjct: 187 KQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTYIE 244

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P  K+
Sbjct: 245 GLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGWKM 304

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V   MRR AK +N
Sbjct: 305 FSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN 364

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++ GYVETI  R
Sbjct: 365 FGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHR 424

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L   KL  K+LLQ+H
Sbjct: 425 RRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVH 484

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+FE PE EI    +I+   ME A    + L VPLKV+    + W
Sbjct: 485 DELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 527


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/621 (36%), Positives = 355/621 (57%), Gaps = 32/621 (5%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LS    N   Y  I N + +   ++ +      +  + T ++D F  K + I+I+  + K
Sbjct: 295 LSAELTNKVEYKVIENERALSDLLETIMKSKKIALDLETTSLDPFEGKIVGISIAVDEGK 354

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     +I ++ H       KN   + +  +L+  F +   +  GHNIK+D   + 
Sbjct: 355 --------AFYIPIA-HVG----AKNIPIESVKKFLRDLFNSGKTVG-GHNIKFDLKFIS 400

Query: 478 RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI----- 530
           R GI   +  F D M+ +Y+L+      ++  ++ K L +         K +IP+     
Sbjct: 401 RLGIEPQIPSF-DSMIEAYLLNPNEKKFNLDELSLKLLGHKMISYEDLVKDTIPLFAGDF 459

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             I      +++ E++++ L++  LL P +   ++  +YE+++ PMI V++ +E+ G+  
Sbjct: 460 SYIPVDTAVKYSCEDADMSLRIHNLLHPLIYSNEMNELYEKIELPMILVLANLELNGVYF 519

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L  +S E+ K LL+L   I++++GE FNL+SPKQLG ILF KLK PS   T TG +
Sbjct: 520 DIQYLNNLSQEMDKKLLALSNRIFEITGEAFNLNSPKQLGYILFEKLKLPSVKSTSTGAY 579

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE +   +  I K ILE+R++ K+KSTY D++PN +NK T+RVH  ++   T T
Sbjct: 580 STDVEVLEYL-ANEYEIAKLILEYRKIQKLKSTYVDAIPNMVNKNTKRVHASFNQTGTAT 638

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPL 767
           GRL+S +PNLQN+P ++D G++IR A    P K    ++ ADYSQIELR+LAHI +   L
Sbjct: 639 GRLSSSDPNLQNLPGRSDEGKEIRMAV--KPQKDGWYILGADYSQIELRVLAHITEDPNL 696

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F+ + DIH   A ++FGV+ E ++  MRR  K +NF+I+YG+SP+ LA +  +   +
Sbjct: 697 INAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFAIVYGVSPYGLAKRTGLDVKD 756

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
               I+ Y   +  + EY+   K F ++NGYV T+FGR+    +INS   +IR   ER A
Sbjct: 757 TKKMIEAYLDYYKNVQEYMANIKEFAKKNGYVRTMFGRKRDIPQINSKDQNIRAEGERIA 816

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           IN PIQGSAADI + AMI +++ L+D KL + M+LQ+HDELVFEVPE E+    +++   
Sbjct: 817 INTPIQGSAADIMKIAMIRIYERLKDEKLQSMMILQVHDELVFEVPENEVEYVKKLVKEE 876

Query: 948 MEKACLPKINLRVPLKVNIKV 968
           ME A    + LRVPL V+I V
Sbjct: 877 MENA----VKLRVPLLVDIYV 893



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 169/302 (55%), Gaps = 30/302 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            +FL DG+  +YRA++A         G+P NA+ G   ML K L+         H  +  
Sbjct: 3   RVFLFDGTGLLYRAYFAIDQSLTTTSGVPTNALYGLSRMLVKFLK--------EHVIINE 54

Query: 66  DYPAV--------TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           DY A         T+R E+Y DYKA+RP+ PE LL Q+ L     + FGI  I++ G+EA
Sbjct: 55  DYCAFMLDVKGGSTYRKELYADYKAHRPETPEPLLKQISLADELIEGFGIKLIKVPGYEA 114

Query: 118 DDIIATYTYIAEKEG-----FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           DD+IAT     EKE        + II++DKD++QLV+    ++   K     +K     +
Sbjct: 115 DDVIATLAKKFEKEKQKYNISEINIITSDKDMLQLVNENIFVWRVEKGVTDLKKYTNNEI 174

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           I+K+GI  E++    AL GD  DNIPG+ GIG KTAA +L E+G++EN L N S++ +K 
Sbjct: 175 IEKYGITSEQIKDYLALVGDVSDNIPGVSGIGEKTAAKILNEFGSVENALKNISKLPEKI 234

Query: 229 RR--ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           R   EN +E  E   LSRKLV L T+V I I +E L+ +  +  +L++ LK  EF+ +I 
Sbjct: 235 RNAIENNIEDFE---LSRKLVELNTNVEIKIDIEELLYKGYDQKKLLNVLKKFEFSSVIK 291

Query: 287 RV 288
            +
Sbjct: 292 EL 293


>gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.]
          Length = 912

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/616 (37%), Positives = 349/616 (56%), Gaps = 18/616 (2%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++  +Y+ I N K + + +++LE+    +    T + +   +K + I++S          
Sbjct: 309 LSGKNYSIIDNIKSLSELLRRLESANHFALDTETTSENPLKAKLVGISVSLKAN------ 362

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
             E  +I L+     +   K     E L+ LK  FEN    KIG NIKYD +VL R+GI 
Sbjct: 363 --EAFYIPLA--HKYEGVPKQLDMNETLNMLKGVFENPDIKKIGQNIKYDWIVLKRHGID 418

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           + G + D M+ SY+++  + +H++  IA  +L +   T +E +  +K       +   + 
Sbjct: 419 IAGVYSDTMIASYLINPSKRAHNLDQIALDFLGHKKITFEETVGKKKPESGFSNVPLEKA 478

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A E++++ L    +L PKL+   L  ++E ++ P+I V+ +MEI GI +D++ L ++
Sbjct: 479 VSYACEDADITLMAHDVLFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLSEL 538

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S    + +  LEENIY ++G  FN+ SP+QLG++LF KL  P   KTK     +T  D+ 
Sbjct: 539 SKHFEQQIEDLEENIYSVAGMTFNIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVDVL 598

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                ++ +   +L  R LSK+KSTY D+L    +  T+R+HT ++   T TGRL+S  P
Sbjct: 599 TELAQNHELPALVLRHRTLSKLKSTYTDALLEIADPETERIHTSFNQTVTATGRLSSSNP 658

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP+KTD G++IR AF+     KL+SADYSQIELR+LAH A+   L   F    DIH
Sbjct: 659 NLQNIPVKTDEGREIRSAFVPKKGWKLLSADYSQIELRLLAHCAEDEILINAFLEDEDIH 718

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A EIF +  E ++P++R  AKTINFSI+YGIS F L+  L I +  A  YI  YF R
Sbjct: 719 TRTAIEIFQIFPEFITPELRYQAKTINFSIMYGISAFSLSKDLGISQKMAQTYINNYFAR 778

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +  +  +I+KT +    N    T+ GR     +I+S    +    ER A+N PIQG+AAD
Sbjct: 779 YKEVKRFIDKTISDAHVNKKTSTLLGRIRLLPDIDSSNKIVIAAAERIAVNTPIQGTAAD 838

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + AMI++ K+  + KL   MLL +HDELVFEVP +E+   S ++ + ME        L
Sbjct: 839 LIKIAMINIDKAFTEKKLKAAMLLSVHDELVFEVPPDELDMVSDLVKNMMENVW----TL 894

Query: 959 RVPLKVNIKVSNNWQE 974
           +VPLKVNI    NW +
Sbjct: 895 KVPLKVNISSGENWSQ 910



 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 116/292 (39%), Positives = 186/292 (63%), Gaps = 5/292 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LFL+DGS++IYRA++A   LS    G P NAI GF  +L KL+++   +    +  ++FD
Sbjct: 27  LFLIDGSAYIYRAYHAIRNLSNSK-GFPTNAIFGFTRILIKLIEDWAPK----YVVMVFD 81

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++I+ DYKA RP +PE L  Q+P ++  T+AF +P IEIQG+EADDII T   
Sbjct: 82  AKGPTFRHDIFKDYKATRPPMPEDLQVQIPFIKEITKAFNLPVIEIQGYEADDIIGTLAR 141

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ GF+V +++ DKD +QLV+  + ++D +K++  D++   K +G+ PE+M+ +  L+
Sbjct: 142 KAEESGFSVVMVTGDKDFLQLVTDKSIIWDPMKDKITDLDAFRKDFGLIPEQMIDVMGLS 201

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DN+PG+PGIG KTA  L++ +G+++N+  N   I +KK+ EN++++ E A LSRKL
Sbjct: 202 GDTSDNVPGVPGIGPKTALDLIKTFGSMKNLYDNIDSITKKKQYENLVQFKEQADLSRKL 261

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           V +  + PI   ++    ++ + PRL    +  EF +L    +   D    N
Sbjct: 262 VEIDKNAPINFEIDSFCFKNPDNPRLSELFQEFEFRQLQQSFSGHSDLSGKN 313


>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
 gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
          Length = 871

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/525 (40%), Positives = 328/525 (62%), Gaps = 27/525 (5%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508
           L  L+ F ENE   K+ HN K+ ++VL RYG+   G   D +L+SYVLD G S   ++  
Sbjct: 361 LEKLRAFLENEEIGKLVHNGKFIEVVLKRYGLKFDGVRGDTLLLSYVLDPGFSGETLSEH 420

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
              +L                +D+  D  +    ++      +L  +L  KL  + L+++
Sbjct: 421 LFHYLGEV-------------VDEKMDPGLAVRGLK------KLHQVLEEKLGSQDLVNL 461

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y+ ++ P+  V++ ME TGI++D  +L ++S E++  +   +  IY ++G++FN++S +Q
Sbjct: 462 YKVVELPLSPVLADMEFTGIKVDPRILAEISQELALRIAEDQARIYQVAGQEFNINSTRQ 521

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG +LF  L  P   KTKTG + T+A+ LE++  G + II++I+E+R L+K+KSTY D+ 
Sbjct: 522 LGKVLFEDLGLPPVKKTKTG-YSTSAEVLEEL-YGSHEIIEHIVEYRTLAKLKSTYVDTF 579

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747
           P +I+  T RVHT +  A T TGRL+S+EPNLQNIPI+ + G++IR+AF+       L+S
Sbjct: 580 PGYIHPETGRVHTVFKQAVTATGRLSSVEPNLQNIPIRMEEGRRIRKAFVPGDENHILLS 639

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            DYSQI+LR LAH++    L + F   +DIH   A+EIF V +++V+P +RR AK +NF 
Sbjct: 640 CDYSQIDLRSLAHMSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNFG 699

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I+YGIS F LA    + R EA  YI+RY   +PG+  Y+++     R+ GYV T+ GRR 
Sbjct: 700 IVYGISDFGLARGTGVTREEAKAYIERYLDSYPGVRRYMQEVVAMGREKGYVSTVLGRRR 759

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ S   ++R++ ER A+NAPIQG++ADI + AM+SV++ L+   L ++MLLQ+HD+
Sbjct: 760 YLPDLLSSNRTVRSMAERMALNAPIQGTSADIIKLAMLSVYRELKRRNLRSRMLLQVHDD 819

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LVFEVP EE+   + ++   ME A      L+VPL+V +KV  NW
Sbjct: 820 LVFEVPLEELEEVALLVRDCMENA----FELKVPLEVEVKVGANW 860



 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/286 (39%), Positives = 162/286 (56%), Gaps = 9/286 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + ++DG+S +YRAFYA PLL R   G   NA+ GF NML K+L     E   SH  V
Sbjct: 3   QERVMIIDGNSLLYRAFYALPLL-RNRRGTFTNAVYGFLNMLSKVLS----EYQPSHIIV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    T R+E Y +YK +RP  P  L  Q  ++R   +A  +  IE+ G+EADDII T
Sbjct: 58  AFDKDRKTLRSEEYGEYKIHRPPAPPELREQFGILREVLEALNVSYIEMSGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  A ++G    I++ D+D +QLVSP   +  T K     E+ D++ V  KW + P ++
Sbjct: 118 LSVRAGEQGLPCIIVTGDQDELQLVSPGIEVLVTKKGISEMERYDLQAVHGKWEVSPYQL 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             ++ L GD+ DNIPG+PGIG KTA  L+++YG+LE I  N + I   + RE +  + + 
Sbjct: 178 PDVKGLMGDASDNIPGVPGIGRKTAIKLVKQYGSLEGIYANLNEITPVRLRELLTAHKDQ 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           A LSRKL  +  DVP+ +  E L        RL+   + LEF  L+
Sbjct: 238 AFLSRKLATIVKDVPLEVEFEKLRRRPPQRERLVRVYQELEFNSLL 283


>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
 gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
          Length = 875

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/493 (44%), Positives = 304/493 (61%), Gaps = 35/493 (7%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ED+ LM Y L +G        ++QK L    KE+LK            ++ ++   IE++
Sbjct: 411 EDLELMQYALSAG--------LSQKILF---KEVLK------------ETLIENIIIESA 447

Query: 547 NVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            +++  ++ L  + I+E    K   +Y  +D P+  ++ +ME  GI ++ + LKQ+SAE 
Sbjct: 448 KIVIN-FISLYKQTILELKDNKTFRLYSDIDLPICFILDKMEKVGITVNANYLKQLSAEF 506

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQIN 661
              +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A  K   + T A+ LE+++
Sbjct: 507 GTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLS 566

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+S EPNLQ
Sbjct: 567 EHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQ 626

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP ++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N  DIH   
Sbjct: 627 NIPTRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQT 686

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA++YIK+YF  + G
Sbjct: 687 ACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKG 746

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG+ ADI +
Sbjct: 747 VQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIK 804

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +     N+ VP
Sbjct: 805 IAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMDVP 860

Query: 962 LKVNIKVSNNWQE 974
           +   I+  NNW E
Sbjct: 861 IITEIRAGNNWME 873



 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 122/294 (41%), Positives = 175/294 (59%), Gaps = 7/294 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+Y   PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYTQQPLTSPK--GEPVGALYGFTSMLLKLLNDFKPQ---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E +G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKKGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+G   +K+
Sbjct: 115 IIATFATKTAALGEHVVIISSDKDLLQLMTEHIKIYDPLKGKYITEDDVVKKFGTTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E 
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D
Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLKWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288


>gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1]
 gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1]
          Length = 875

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/527 (40%), Positives = 321/527 (60%), Gaps = 19/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            KK+ E+E  +K  ++ K   + L RYGI +RG + D++L+SY+L+   +  D AS+A K
Sbjct: 357 FKKWVEDESKIKHVYDAKRSIVALRRYGIDLRGTDFDLLLVSYLLNPSDTVEDFASVA-K 415

Query: 512 WLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
              Y   E       K  K  +P +K    +  EH    +  I  L       L     L
Sbjct: 416 THDYGNVETDEAVYGKGAKRKLPEEK----RYAEHISRKAEAIDALCEPCTKALKNNGQL 471

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            ++E+L+ P+  +++ ME TG+++D D LK++  E    L  +E+ IY ++G +FN++SP
Sbjct: 472 ELFEQLELPLSLILADMEYTGVKVDTDRLKEMGEEFKLRLHEIEQRIYSMAGTEFNINSP 531

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF K+  P   KTKTG + T+A  LE++    + I++ IL +RQL K++STY +
Sbjct: 532 KQLGVILFEKMGLPVIKKTKTG-YSTSADVLEKLEPA-HEIVREILHYRQLGKLQSTYIE 589

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L   +++   +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+      LI
Sbjct: 590 GLLKVVHQ-DGKVHTRFNQALTQTGRLSSTDPNLQNIPIRMEEGRKIRQAFVPSEEGWLI 648

Query: 747 -SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            S+DYSQ+ELR+LAHI+    L + F   +DIH   A E+F V  E+V+ +MRR AKT+N
Sbjct: 649 FSSDYSQVELRVLAHISGDEKLIEAFREGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVN 708

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R EA ++IKRYF  +P + EY+++     +Q GYV T+  R
Sbjct: 709 FGIVYGISDYGLSQNLGISRKEAGEFIKRYFASYPRVKEYMDEIVREAKQKGYVSTLLKR 768

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  EI S   ++R+  ER A+N PIQGSAADI ++AMI + K L+  KL  ++LLQ+H
Sbjct: 769 RRYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMAKRLKKEKLRARLLLQVH 828

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+FE PEEEI    +I+   ME A    ++L  PLKV+      W
Sbjct: 829 DELIFEAPEEEIEVLKEIVPEVMEHA----VDLAAPLKVDSAYGPTW 871



 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 111/287 (38%), Positives = 166/287 (57%), Gaps = 9/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML K+L+  +     +H  V FD
Sbjct: 4   LILIDGNSIAYRAFFALPLLNNDK-GIHTNAVYGFTMMLSKILEEEK----PTHILVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E Y +YK  R K P  L  Q PL+R    A GI   E++ +EADDII T + 
Sbjct: 59  AGKTTFRHETYSEYKGTRQKTPPELSEQFPLIRELLDAHGIERYELENYEADDIIGTLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE+EGF V +IS DKD+ QLVSP T +  T K     E     HV +K+G+ P +++ +
Sbjct: 119 KAEEEGFIVKVISGDKDMTQLVSPKTTVMITRKGITDMEAYTPAHVEEKYGLTPHQIIDM 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GDS DNIPG+PGIG KTA  LL+++  +E +L +   +  KK +E +    E A +
Sbjct: 179 KGLMGDSSDNIPGVPGIGEKTAIKLLKQFPTVEELLDHIGEVSGKKLQEKLEANKEQALM 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           S++L  +  D+P++I +E    +  +  +L    + L F  ++ ++ 
Sbjct: 239 SKELATIHRDIPLSISIEQAAYKHADPEKLRHLYQELGFKSMLEKMG 285


>gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 875

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/530 (40%), Positives = 321/530 (60%), Gaps = 16/530 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S  K + E+    K   N K   + L   G  ++G E D+M+ SY+L+   ++ D+A+IA
Sbjct: 354 SKFKAWLEDGRVKKTVFNGKRTIVSLKWAGHEIKGIEHDVMIASYILNPAEANDDLATIA 413

Query: 510 Q--KWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           +   +      E +  K  K SI       +Q+ EH I  +  +  L  +L  +L+  + 
Sbjct: 414 KLKGYHQVQSDEAVYGKGAKRSIA----EAAQLAEHVIRKAAAVAYLKEVLEKELVENEQ 469

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             ++E+L+ P+  V++ ME  G++ID+  L ++  ++ + L  +E  IY+ +G++FN++S
Sbjct: 470 FELFEKLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEFNINS 529

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG +LF K++ P   KTKTG + T+A  LEQ+    + II  IL++RQL K++STY 
Sbjct: 530 PKQLGVVLFEKMQLPVIKKTKTG-YSTSADVLEQL-ASTHDIIPEILQYRQLGKLQSTYI 587

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
           + L   I++   +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR AF+ S P   
Sbjct: 588 EGLKKVIHESDGKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGKKIRGAFVPSQPDWL 647

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L   F++ LDIH   A ++F V  E+V+  MRR AK +
Sbjct: 648 IFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVEREEVTSNMRRQAKAV 707

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA +I+RY   FPG+ EY++      ++ GYV T+  
Sbjct: 708 NFGIVYGISDYGLSQSLGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLH 767

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQG+AADI ++AMI + K L+D  L  K+LLQ+
Sbjct: 768 RRRYLPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIEMDKRLKDENLQAKLLLQV 827

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+FE PEEEI    +I+   ME A    + L VPLKV+      W E
Sbjct: 828 HDELIFEAPEEEIKILEKIVPEVMENA----LELEVPLKVDYSYGKTWYE 873



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 176/305 (57%), Gaps = 12/305 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V FD
Sbjct: 5   LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAIYGFTTMLTRILEEEK----PTHLLVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + +YK  R K P  L  Q P +R    A+GI   E+  +EADDII T + 
Sbjct: 60  AGKTTFRHKTFTEYKGGRQKTPPELSEQFPFIRELLDAYGIKRYELPDYEADDIIGTLSK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181
            AEK+G AV +IS DKDL+QLVS    + D  ++   D++      + +K+GI   +++ 
Sbjct: 120 QAEKKGMAVKVISGDKDLLQLVSEHVTV-DITRKGITDVDSYTPAAIDEKYGITAAQIID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GDS DNIPG+PG+G KTA  LL+E+  +EN+L +  ++  KK +E + +  E+A 
Sbjct: 179 MKGLMGDSSDNIPGVPGVGEKTALKLLKEFETVENVLKSIDQVSGKKLKEKLEDNRESAI 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S+KL  +  + P+ + +E    +     ++IS  K L F  L+ +   + + + A+ E 
Sbjct: 239 MSKKLATIYCEAPLEVSVEDAKYDGFESSKVISLFKELGFNSLLAKFGESAE-EEADFEE 297

Query: 302 VVLDI 306
           +  +I
Sbjct: 298 LTFEI 302


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/530 (40%), Positives = 320/530 (60%), Gaps = 16/530 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S  K + E+    K   N K   + L   G  ++G E D+M+ SY+L+   ++ D+A+IA
Sbjct: 354 SKFKAWLEDGRVKKTVFNGKRTIVSLKWAGHEIKGIEHDVMIASYILNPAEANDDLATIA 413

Query: 510 Q--KWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           +   +      E +  K  K SI        Q+ EH I  +  +  L  +L  +L+  + 
Sbjct: 414 KLKGYHQVQSDEAVYGKGAKRSIA----EADQLAEHVIRKAAAVAYLKEVLEKELVENEQ 469

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             ++E+L+ P+  V++ ME  G++ID+  L ++  ++ + L  +E  IY+ +G++FN++S
Sbjct: 470 FELFEKLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEFNINS 529

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG +LF K++ P   KTKTG + T+A  LEQ+    + II  IL++RQL K++STY 
Sbjct: 530 PKQLGVVLFEKMQLPVIKKTKTG-YSTSADVLEQL-ASTHDIIPEILQYRQLGKLQSTYI 587

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
           + L   I++   +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR AF+ S P   
Sbjct: 588 EGLKKVIHESDGKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGKKIRGAFVPSQPGWL 647

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L   F++ LDIH   A ++F V  E+V+  MRR AK +
Sbjct: 648 IFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVEREEVTANMRRQAKAV 707

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA +I+RY   FPG+ EY++      ++ GYV T+  
Sbjct: 708 NFGIVYGISDYGLSQSLGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLH 767

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQG+AADI ++AMI + K L+D  L  K+LLQ+
Sbjct: 768 RRRYLPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIEMDKRLKDENLQAKLLLQV 827

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+FE PEEEI    +I+   ME A    + L VPLKV+      W E
Sbjct: 828 HDELIFEAPEEEIKILEKIVPEVMENA----LELEVPLKVDYSYGKTWYE 873



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 176/305 (57%), Gaps = 12/305 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V FD
Sbjct: 5   LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAIYGFTTMLTRILEEEK----PTHLLVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + +YK  R K P  L  Q P +R    A+GI   E+  +EADDII T + 
Sbjct: 60  AGKTTFRHKTFTEYKGGRQKTPPELSEQFPFIRELLDAYGIKRYELPDYEADDIIGTLSK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181
            AE++G AV +IS DKDL+QLVS    + D  ++   D++      + +K+GI   +++ 
Sbjct: 120 QAEQKGMAVKVISGDKDLLQLVSEHVTV-DITRKGITDVDSYTPAAIDEKYGITAAQIID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GDS DNIPG+PG+G KTA  LL+E+  +EN+L +  ++  KK +E + +  E+A 
Sbjct: 179 MKGLMGDSSDNIPGVPGVGEKTALKLLKEFETVENVLKSIDQVSGKKLKEKLEDNRESAI 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S+KL  +  + P+ + +E    +     ++IS  K L F  L+ +   + + + A+ E 
Sbjct: 239 MSKKLATIYCEAPLEVSVEDAKYDGFESSKVISLFKELGFNSLLAKFGESAE-EEADFEE 297

Query: 302 VVLDI 306
           +  +I
Sbjct: 298 ITFEI 302


>gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5]
 gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5]
          Length = 875

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/492 (43%), Positives = 299/492 (60%), Gaps = 33/492 (6%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ED+ LM Y L +G S  ++            KE+LK            +  ++   IE++
Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLK------------EPWIENIIIESA 447

Query: 547 NVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            +++    L +    +L   K   +Y  +D P+  ++ +ME  GI +D + LKQ+SAE  
Sbjct: 448 KIVINFIALYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEFG 507

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINC 662
             +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A  K   + T A+ LE+++ 
Sbjct: 508 TEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSE 567

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
               I   +L WRQL+K+K+TY DSLP  I+  T +VHT +   ST TGRL+S EPNLQN
Sbjct: 568 HGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHKVHTTFLQTSTTTGRLSSQEPNLQN 627

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           +PI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N  DIH   A
Sbjct: 628 VPIRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA++YIK+YF  + G+
Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG+ ADI + 
Sbjct: 748 QKYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIKI 805

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +     N+ VP+
Sbjct: 806 AMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMAVPI 861

Query: 963 KVNIKVSNNWQE 974
              I+  NNW E
Sbjct: 862 ITEIRAGNNWME 873



 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/294 (41%), Positives = 175/294 (59%), Gaps = 7/294 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+YA  PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+G   +K+
Sbjct: 115 IIATFATKTAALGAHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E 
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D
Sbjct: 235 ALISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288


>gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20]
 gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains
           [Leuconostoc citreum KM20]
          Length = 893

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/526 (40%), Positives = 326/526 (61%), Gaps = 15/526 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+   EN    K   N+K   ++  R G++++G + D +L++Y+LD+  + ++++++AQ+
Sbjct: 373 LRAVIENGDIKKNVFNVKAQLILFKRLGLTLKGAQFDFLLVAYLLDTTDNDNEMSTLAQR 432

Query: 512 WLSY-TRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           +  Y T  E +  K  K ++P D   +  V  H    ++ ++QL +     L   +  H+
Sbjct: 433 FDVYLTEDEEIYGKGAKYAVPDD---EELVLMHLAHKADALIQLEMPALSALQSHQQTHL 489

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y  ++ P+  V+++ME  G +ID+  L+ +  ++   + ++EE IY  +GEKFNL+SPKQ
Sbjct: 490 YTEIELPLAHVLAEMEYQGFKIDRKRLQVIGEDLEARIHTIEEAIYLEAGEKFNLNSPKQ 549

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG +LF K+  P   KTKTG   +TA D+ +      PI+++IL++RQL+KIKSTY + L
Sbjct: 550 LGILLFEKMGLPIIKKTKTGY--STAVDVLEKLASQAPIVEHILQYRQLAKIKSTYVEGL 607

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
              ++    ++HT +    T TGRL+S++PNLQNIP++T+ G++IRRAF+ S P  ++  
Sbjct: 608 LAVVHTEDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRTEEGRQIRRAFVPSQPNWQIFG 667

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINF 806
           ADYSQIELR+LAHI     + + F N  DIH   A  +FG+ N   V P MRR AK +NF
Sbjct: 668 ADYSQIELRVLAHITGDQNMQRAFLNGEDIHAETARAVFGLDNNAPVDPLMRRTAKAVNF 727

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS + L+  L I R+EA  +I+ YF  FP IHE++ K K    + GYVETI  RR
Sbjct: 728 GIVYGISDYGLSNNLGISRAEAKRFIETYFKEFPQIHEWMTKIKAQAHEQGYVETIAKRR 787

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  EI S   ++R+  ER A+N+PIQGSAADI + AMI V  +L+D++L   +LLQ+HD
Sbjct: 788 RYLPEIKSKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVADALKDNQLQANILLQVHD 847

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FE PE+EI T   I+   M+ A    + L VP++V+    N W
Sbjct: 848 ELIFEAPEDEIETLRDIVTRVMDSA----VALDVPMQVDSHYGNTW 889



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 160/295 (54%), Gaps = 15/295 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R   H GL  NA+  F N L +++     + +    AV
Sbjct: 5   LLLIDGNSLAFRAFYAMYNQLDRMISHKGLHTNALVAFNNFLDQIV-----DPMQPDLAV 59

Query: 64  I-FDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           + +D  +   TFR E++ +YK  R K P     Q P +R      G+   E  G EADDI
Sbjct: 60  VAWDAGSGKTTFRGELFSEYKDGRSKAPSEFTEQFPYLREMVALHGLRNYEQPGLEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T++ + E+ G+ V I++ D+DL QL +    +  T K     E    +++++K+ + P
Sbjct: 120 IGTFSRMGEQAGYNVIIVTGDQDLTQLATDNITVNVTKKGVTEIEAFTPDYIMEKFELTP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++  +ALTGD+ DN PG+  IG KTA  LL+ Y +++N+  +   +K  K +EN++  
Sbjct: 180 SQIIEKKALTGDTSDNYPGVTKIGEKTALKLLKTYHDIDNLYRHIDDMKPSKMKENLISD 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
             +A  +R+L  + TD  + +PLE L     +  +L+ F + ++F K + ++  +
Sbjct: 240 QASAFRARQLATILTDATLDLPLEELEYRGIDYDKLVPFYENIDFKKQLAKIKAS 294


>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
          Length = 876

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 326/527 (61%), Gaps = 18/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ- 510
            KK+ E+E   K   + K   + L R+GI ++G E D++L SY+++   S  D A +A+ 
Sbjct: 357 FKKWAEDETKKKTVFDAKRTVIALRRHGIELKGIEFDLLLASYLINPSESPSDFADVAKL 416

Query: 511 -KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL-QLWLLLRPKLIVEKLLHV 568
             +      E +  + + +   K+ D ++ E  I    V L +L    R  L     L +
Sbjct: 417 HGFNEVQSDEAVYGKGAKL---KLPDREIYEEHIARKAVGLTKLAETCRDVLKENDQLSL 473

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           +  L+ P+  +++ ME TG+++D D L ++  E+   L  +E+ IY+L+G++FN++SPKQ
Sbjct: 474 FYDLEMPLALILADMEWTGVKVDVDRLTEMGDELHNRLQEIEKEIYELAGQEFNINSPKQ 533

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG ILF K+  P   KTKTG + T+A  LE++    + I++ ILE+RQL K++STY D L
Sbjct: 534 LGHILFEKMGLPVIKKTKTG-YSTSADVLEKLESS-HEIVRYILEYRQLGKLQSTYIDGL 591

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---L 745
              +++ T +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P++K   +
Sbjct: 592 LKVVHQNTHKVHTRFNQALTQTGRLSSADPNLQNIPIRLEEGRKIRQAFV--PSEKDWVI 649

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            SADYSQIELR+LAHI+    L + F   +DIH   A ++F V  E+V+  MRR AK +N
Sbjct: 650 FSADYSQIELRVLAHISGDQKLIEAFREDMDIHTKTAMDVFHVQKEEVTSNMRRQAKAVN 709

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R EA  +I+RYF  +P + EY+++     ++ GYV T+  R
Sbjct: 710 FGIVYGISDYGLSQNLGITRKEAGQFIERYFASYPDVKEYMDEIVREAKRKGYVTTLLHR 769

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  EI S   ++R+  ER A+N PIQGSAADI ++AMI + + L+  +L ++MLLQ+H
Sbjct: 770 RRYLPEITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDMAERLKKEQLKSRMLLQVH 829

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+FEVP +EI T  +I+   ME A    + L+VPLKV+      W
Sbjct: 830 DELIFEVPPDEIETMKKIVPDVMEHA----VELKVPLKVDYAYGPTW 872



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 173/298 (58%), Gaps = 9/298 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG++  YRAF+A PLL+ +  G+  NAI GF  ML K+L+  +     +H  V FD
Sbjct: 5   LILIDGNNIAYRAFFALPLLNNEK-GIHTNAIYGFTMMLNKILEEEK----PTHMLVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E + +YK  R K P  L  Q P +R   ++F IP  E++ +EADDII T + 
Sbjct: 60  AGKTTFRHETFKEYKGGRQKTPPELSEQFPFIRDLLKSFHIPQFELENYEADDIIGTLSL 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTT----CLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            AEK+ F + I S DKDL QL S  T    C       E+   EHV +K+G+ P++++ +
Sbjct: 120 EAEKKDFEIKIYSGDKDLTQLASEKTTVCLCRKGITDIEEYTPEHVKEKYGLTPQQIIDM 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GDS DNIPG+PGIG KTA  LL+E+  +E ++ +   I  KK +E + E+ + A +
Sbjct: 180 KGLMGDSSDNIPGVPGIGEKTAIKLLKEFETVEKVVDSIDEISGKKLKERLQEHKQQALM 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           S++L  ++ D P+ I ++ L  +  +  ++ S  K L F  L+ ++  T + +   +E
Sbjct: 240 SKELATIKRDAPLGITVDELEYQGPDWEKVQSIYKELGFQSLLEKIDQTQETEVQPLE 297


>gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
            araneosa HTCC2155]
 gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
            araneosa HTCC2155]
          Length = 1036

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/532 (37%), Positives = 323/532 (60%), Gaps = 10/532 (1%)

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505
            +EIL  +K FF +        N K+D  +LH  GI ++  + D ++ S++ +  R  HD+
Sbjct: 509  EEILKEIKPFFADSSLKFFAQNAKFDLQMLHYAGIEVKNIDFDTLVASFICNPSRQFHDL 568

Query: 506  ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             S++  +L+Y +   + ++   K  I +  +   +V  +  E+ ++ L+L   L  +L  
Sbjct: 569  DSLSLHYLNYRKISTESLIGKGKKQISMADLPVERVATYCCEDVDITLRLRNELEAELHR 628

Query: 563  EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
              L ++++ +D P+I V+S+ME  GI I+   L+++S++ S  L   EE I+ L+G +FN
Sbjct: 629  RDLRNLFDEMDIPLIPVLSKMENNGISINLGTLEKISSDFSAELKKCEEQIHALAGHEFN 688

Query: 623  LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
            ++SPKQ+G +LF ++   +G KT TG + T+A+ LE +   ++ I++ IL  R LSK+ S
Sbjct: 689  INSPKQVGVVLFEEMGLKAGKKTATG-YSTSAEVLENL-AAESEIVRAILRHRTLSKLIS 746

Query: 683  TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
            TYAD+LP  +++  QR+HT +S  +  TGRLAS +PNLQNIP +T  G+ IR AF +P  
Sbjct: 747  TYADALPKEVSELDQRIHTRFSQTTAATGRLASTQPNLQNIPTRTAEGKSIRSAFQAPEG 806

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
               IS DYSQIELRI+A +++   L + F N  D+H   A+ +F   + +V+ Q R  AK
Sbjct: 807  HHFISCDYSQIELRIMAELSQDPGLLEAFNNDFDVHTHTASLVFETELSEVTKQQRYAAK 866

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             +NF I++G  P+ LA ++ +   EA  +I  YF R+P + +++ K     R  GY ET 
Sbjct: 867  AVNFGIMFGQGPYGLAKEIGVSADEAKQFISNYFKRYPDVQKFMAKCVEDARDKGYSETS 926

Query: 863  FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            FGRR +  E+ S    IR+  ER ++N+PIQG+AADI + AMI V   LE  +L +KMLL
Sbjct: 927  FGRRRYLPEMLSSNGRIRSGAERISVNSPIQGTAADIIKIAMIKVADELEKRQLKSKMLL 986

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            QIHDEL+FEVP++E+    ++I   M    +P+I  +VPLKV+   + +W +
Sbjct: 987  QIHDELLFEVPDDELEIMKELIPQIMTD--IPQI--KVPLKVDCAAAKSWDQ 1034



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 169/304 (55%), Gaps = 5/304 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  ++ +F++D  ++I+RAFY         DGLP NA+ GF N    ++++       SH
Sbjct: 1   MSDQSSIFVIDSMAYIFRAFYGIRANMHSKDGLPTNALFGFINSFENIIRDFN----PSH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
              +FD  + TFRNE+Y +YKANR + PE L PQ  LV+      GIP +  +GFEADDI
Sbjct: 57  VVAVFDAGSETFRNEMYSEYKANRKECPEELKPQFDLVKEYIALRGIPLLIQKGFEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKM 179
           IAT    A        I S DKDLMQLV+  T +  T K    ID E V++  G+ P+++
Sbjct: 117 IATVAKQATGSHIKTVICSGDKDLMQLVNDDTLICHTHKNNLMIDAEKVVEIMGVRPDQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V   ++ GDS DNIPG+PGIG K AA LL E+ NLE IL +  +IK KK+ E I E A+ 
Sbjct: 177 VDYLSICGDSADNIPGLPGIGPKGAAKLLAEFDNLETILASHDKIKGKKQSETIREKADL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS+ LV+L+ ++ +    E L+    +   L  F + + F + +  +         N 
Sbjct: 237 ATLSKSLVILQDEMTLDKSYEELVPSQPDFDGLADFYERMGFARFLRDLPNIKASYEGNS 296

Query: 300 EPVV 303
           +P +
Sbjct: 297 KPTL 300


>gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1]
 gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1]
          Length = 1027

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/537 (38%), Positives = 318/537 (59%), Gaps = 17/537 (3%)

Query: 449  ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507
            ++  L+   E+    K+GHN+K+D +VL   G+ + G   D M+  Y+L+SG  +H +  
Sbjct: 496  VIEILRDVLESSAIEKVGHNLKFDVIVLRSAGVQLGGITMDTMVADYLLNSGGRNHGLDD 555

Query: 508  IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +AQ+ L +T    K+++ + K  I +D++    V  +A E+ +V ++L   LR +L    
Sbjct: 556  LAQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSPYACEDVDVPIRLAPTLRDELNESG 615

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  +++ ++ P+ +V+++ME  GI ++ D L ++S    K++  L   ++  +G +FNL 
Sbjct: 616  LDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRALVFSAAGHEFNLD 675

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            SPKQLG +LF +L  P   KTKTG   T A  L Q+   ++ I +++L++RQ +K+K+TY
Sbjct: 676  SPKQLGVVLFEELGLPVIKKTKTG-VSTDADVLSQLAV-NHEIAEHVLQYRQATKLKNTY 733

Query: 685  ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK- 743
             D+LP  I  +T RVHT +      TGRL+S EPNLQNIPI+T+ G+ IR AF +     
Sbjct: 734  IDALPQLICDKTGRVHTSFRQDVAATGRLSSSEPNLQNIPIRTEQGKAIRAAFTAGREGW 793

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             L+ ADYSQIELR+LAH +    L   + +  DIH  VAAE+ G+   +V+  +RR AKT
Sbjct: 794  SLLGADYSQIELRVLAHYSGDEALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKT 853

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            INF I+YG SPF LA  L I   EA DYI+ YF R+ G+  ++  T    R  GYV T+ 
Sbjct: 854  INFGIVYGQSPFGLAKTLGISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATML 913

Query: 864  GRRIHYDEINS----PKSSIRNIN--ERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
            GRR     +      P+S  R++   ER AIN PIQG+AAD+ + AM+ VH+ L+   L 
Sbjct: 914  GRRREIKGVRDLAKLPESKRRSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQ 973

Query: 918  TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++LLQIHDEL+ E P+EE+   S  I  +M       + L VPLKV++     W +
Sbjct: 974  ARLLLQIHDELLLESPDEELDALSDTIREAMTSV----MELDVPLKVDVAHGRTWAD 1026



 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/295 (41%), Positives = 173/295 (58%), Gaps = 5/295 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + +VD  S IY+ F+A P ++    GLPV+A+ GF   + +LL  SRK     +    FD
Sbjct: 130 VVVVDAHSLIYQVFHALPPMTSTG-GLPVSAVYGFVGDMLELL--SRKNP--DYLIAAFD 184

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              VTFRNE+YP+YKANR  +P+ L  Q+PL+R A  A GI  IE  GFEADD++AT   
Sbjct: 185 KSEVTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLATVAA 244

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             E+ G    ++++DKD  QL+S  T +Y+  K+++ID   +   WGI P+++V  QAL 
Sbjct: 245 KVEEAGGRCLVVTSDKDCRQLISDQTKIYNIRKDQEIDAAELFGLWGIRPDQVVDYQALV 304

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD +DN+PGI  IG K A  LL+ +  LE IL NA  I  KKR+EN++   E A +SR+L
Sbjct: 305 GDPVDNVPGISLIGPKIAQQLLETHDTLEEILNNAESISGKKRKENLMNGREAAMMSREL 364

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           V L+ DV   IP    +    +  R+ + L+   F +L +R A     +A   EP
Sbjct: 365 VELKRDVESPIPWNRCVRSAADLERVDALLQEFGFRRLRSRAAELLGGEAPVEEP 419


>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
 gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
          Length = 893

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/527 (39%), Positives = 330/527 (62%), Gaps = 10/527 (1%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   E++  LK+G NIKYD  VL R+G+S+ G   D M+ SYV++ G   H++ ++AQ+
Sbjct: 370 LKDVLEDDAVLKVGQNIKYDACVLKRHGVSLSGISFDTMIASYVINPGLRQHNLDALAQR 429

Query: 512 WLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           +L++   + K+++   K++   +++S  +  E++ E++++  +L  +L  ++  EK   +
Sbjct: 430 YLNHKMISYKDVVGKGKNARGFEEVSLEKACEYSCEDADMTFRLRRILAKQIRDEKNEAL 489

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           +  L+  ++ V+  ME+TGI+ID  L + +SA+ ++ +  +E+ I   +G +FNL+SP+Q
Sbjct: 490 FNELEMKLLPVLLDMEMTGIKIDTALFETMSADFAEEMKQVEKKIQADAGMEFNLNSPQQ 549

Query: 629 LGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           LG +LF  LK P G KT KT ++ T  + L+++    + I + IL +R L+K+KSTY D+
Sbjct: 550 LGKVLFEVLKLPGGRKTAKTKRYSTDVKVLQKL-AESHRIAREILRFRSLAKLKSTYLDA 608

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L   +N  T+RVHT ++     TGRL+S +PNLQNIPI+ D G+ IR+ F++   K L++
Sbjct: 609 LVRMVNPETKRVHTSFNQTVAATGRLSSSDPNLQNIPIRGDAGKNIRKGFMAGSGKILVA 668

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+ AH ++       F+ + DIH   A E+ G    +V+P+MRR AK INF 
Sbjct: 669 ADYSQIELRVFAHYSQDAAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINFG 728

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           IIYG+ P +L+ +L I +  A DYI  Y+ R+ G+  + EK      + GYV T+F RR 
Sbjct: 729 IIYGMGPQKLSEELSISKEAAQDYINAYYDRYKGVKRFKEKAIETALEKGYVTTLFNRRR 788

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  +I+   + IR+  ER A+N PIQG+AAD+ ++AMI +H  L +    +KMLLQ+HDE
Sbjct: 789 YLPDISHNNNRIRSEAERMAVNTPIQGTAADLIKKAMIEIHNRLTEAAFQSKMLLQVHDE 848

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+ EVPEEE      +I   ME    P   LRVPLKV+I    NW E
Sbjct: 849 LLLEVPEEEADDLINMIREEME-GVYP---LRVPLKVDIGKGLNWDE 891



 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 118/291 (40%), Positives = 179/291 (61%), Gaps = 6/291 (2%)

Query: 1   MQKE-NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M+ E N ++L+DGSS+I+RA++A   L +   G P NAI GF  M+ KLL     E   +
Sbjct: 1   MENERNTIYLLDGSSYIHRAYHAIRNL-QNAKGFPTNAIFGFTQMVLKLLS----EKKPA 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + AV+FD    TFR+++Y +YKANRP +P  +  QLP +R   +  GI  +E  G+EADD
Sbjct: 56  YLAVVFDAKGPTFRHDLYEEYKANRPPMPHDMAAQLPFIRKVVKNLGIAMLEKSGYEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           II T     E+EGF V ++S DKD  QL+ P   ++DT+K++  D + +   +G  PEK 
Sbjct: 116 IIGTLARAGEEEGFNVVVVSGDKDFRQLIRPRVSMWDTMKDKITDYDSLKSAYGFEPEKF 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L+GD+ DNIPG+ G+G KTA  L++E+G+L+ +  N   IK+KK +EN+ +  + 
Sbjct: 176 IDVMGLSGDTSDNIPGVRGVGEKTAVSLVREFGSLDGVFENLDEIKKKKLKENLNDCRKL 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           ARLSRKLV +   VPI+  L ++ + + +   L    + LEF  L +R A 
Sbjct: 236 ARLSRKLVTIECFVPISTDLNNIKVNEPSRDELADIFRELEFRDLWDRFAA 286


>gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22]
 gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22]
          Length = 886

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/528 (40%), Positives = 330/528 (62%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L++  E++   K   +IK   + LHR  I   G + D++L SY++++  +S+D+  +A  
Sbjct: 367 LRQMLEDKKIKKNVFDIKRTYVGLHRLDIDAEGLDYDMLLASYLVNNENNSNDLGEVAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +K ++P     D +  EH      VI +L   L  KL   +   
Sbjct: 427 YDDYSVKTDLEVYGKGKKQAVP----EDDEFFEHLAAKVAVIEKLKQPLLEKLKDHEQDD 482

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE ++ P+  V+++MEITGI+++  +L Q+  + +  L  LE  IY  +GE+FNL+SPK
Sbjct: 483 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 542

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + LEQ+    +PI+  IL++RQ++KI++TY   
Sbjct: 543 QLGHILFEKLNLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745
           L   I   + R+HT Y    T TGRL+S++PNLQNIP +TD G++IR+AF+ P TK   +
Sbjct: 601 LLECIQPDS-RIHTRYLQTLTATGRLSSVDPNLQNIPTRTDEGKQIRKAFV-PSTKDGYI 658

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804
            S DYSQ+ELR+LAH++    + + F++  DIH   A +IF ++  ++V+P MRRHAK +
Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I  YF ++P I +Y++K     R+NGY ETI  
Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIDNYFEQYPQIKDYMDKAIKKARENGYAETIMH 778

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I+S   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM+LQ+
Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 839 HDELIFDVPKDELDTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 882



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 164/292 (56%), Gaps = 11/292 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R    DGL  NAI  F NML  ++    K++  S+  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTDPSNVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179
            + + E+ G+ V I++ D+DL QL S  T +  T       E    EH+ +  G+ P + 
Sbjct: 122 LSKMGEEAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++E +  +   +K+ K +EN++   + 
Sbjct: 182 IDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSVEKLYEHVDEMKKSKLKENLINDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           A L++KL  +  D P+ + L    LE+ N   L +  + L F K +  +  +
Sbjct: 242 AILAKKLATIDRDSPVEVTLADTKLEEPNIEDLRNLYERLGFKKFLAELGAS 293


>gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
          Length = 896

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/528 (40%), Positives = 330/528 (62%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L++  E++   K   +IK   + LHR  I   G + D++L SY++++  +S+D+  +A  
Sbjct: 377 LRQMLEDKKIKKNVFDIKRTYVGLHRLDIDAEGLDYDMLLASYLVNNENNSNDLGEVAHL 436

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +K ++P     D +  EH      VI +L   L  KL   +   
Sbjct: 437 YDDYSVKTDLEVYGKGKKQAVP----EDDEFFEHLAAKVAVIEKLKQPLLEKLKDHEQDD 492

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE ++ P+  V+++MEITGI+++  +L Q+  + +  L  LE  IY  +GE+FNL+SPK
Sbjct: 493 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 552

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + LEQ+    +PI+  IL++RQ++KI++TY   
Sbjct: 553 QLGHILFEKLNLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 610

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745
           L   I   + R+HT Y    T TGRL+S++PNLQNIP +TD G++IR+AF+ P TK   +
Sbjct: 611 LLECIQPDS-RIHTRYLQTLTATGRLSSVDPNLQNIPTRTDEGKQIRKAFV-PSTKDGYI 668

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804
            S DYSQ+ELR+LAH++    + + F++  DIH   A +IF ++  ++V+P MRRHAK +
Sbjct: 669 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 728

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I  YF ++P I +Y++K     R+NGY ETI  
Sbjct: 729 NFGIVYGISDYGLSKNLGISRKQAKTFIDNYFEQYPQIKDYMDKAIKKARENGYAETIMH 788

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I+S   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM+LQ+
Sbjct: 789 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 848

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 849 HDELIFDVPKDELDTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 892



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 164/292 (56%), Gaps = 11/292 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R    DGL  NAI  F NML  ++    K++  S+  V
Sbjct: 16  LLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTDPSNVLV 71

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDII T
Sbjct: 72  AFDAGKVTFRTKMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDIIGT 131

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179
            + + E+ G+ V I++ D+DL QL S  T +  T       E    EH+ +  G+ P + 
Sbjct: 132 LSKMGEEAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGVTPTEF 191

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++E +  +   +K+ K +EN++   + 
Sbjct: 192 IDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSVEKLYEHVDEMKKSKLKENLINDKDK 251

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           A L++KL  +  D P+ + L    LE+ N   L +  + L F K +  +  +
Sbjct: 252 AILAKKLATIDRDSPVEVTLADTKLEEPNIEDLRNLYERLGFKKFLAELGAS 303


>gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255]
          Length = 882

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/530 (39%), Positives = 330/530 (62%), Gaps = 11/530 (2%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS-SHDIAS 507
           +S L   F N    K G+N+K D + L  Y I++   + DI +  Y++DS  S S+D ++
Sbjct: 357 VSKLDSIFSNNEIKKYGYNLKDDYISLKPYNINLENMYFDITIAEYLIDSTSSTSYDCSA 416

Query: 508 IAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           IA K+LS    +++E+L     S   + +    + E+  +    + +   ++   L+   
Sbjct: 417 IAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDLAEYMGQIICTVKETVPMMERSLMDMS 476

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +  ++  ++ P+++V+  ME  GI++D+ +L ++S E  + + +LE+ IY+LSGE FN++
Sbjct: 477 MDGLFYHVEMPLVEVLGHMEYEGIKVDKSILDELSVEFKEIIATLEKEIYELSGEPFNIN 536

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL+ P   KTKTG + T A  LE++    +PII  I E+RQ+ K+ STY
Sbjct: 537 SPKQLGVILFEKLELPIIKKTKTG-YSTNADVLEKLR-DKHPIIDKITEYRQIVKLNSTY 594

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            + L N IN  + R+H+ ++   T TGR++S EPNLQNIPIK ++G+KIR+ FI+    K
Sbjct: 595 VEGLLNIINPESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCK 654

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+ ADYSQ+ELR+LAH+++   + + F++  DIH   A+++F V +E V+ ++R  AK +
Sbjct: 655 LVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAV 714

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYG S F LA  L IP  +A +YI+ YF ++  I E+++ T     ++GY  TI  
Sbjct: 715 NFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S     RN  +R A+NAPIQGSAADI + AMI+VHK LE++ L +K++LQ+
Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+ E  ++EI    +I+   ME A    +N+ V L V++ V ++W E
Sbjct: 835 HDELIVEAIDDEIDIVKKIVKEEMENA----VNMDVHLDVDLNVGSSWYE 880



 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 170/293 (58%), Gaps = 10/293 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S I RAFYA P ++ K +GL  NAI GF  ML+K++   +     +H +V FD
Sbjct: 5   LIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+  Y +YKA R  +P+ L  QL  ++     F I  +EI G+EADDII T + 
Sbjct: 60  RKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFRINRLEIDGYEADDIIGTVSK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE+ G+ V I++ DKD +QL S  T    T K     E+ +   VI+K+ + P + + L
Sbjct: 120 KAEENGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPTQFIDL 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+PGIG KT   L++E+ ++EN++ N  ++K   +++ I E  E A  
Sbjct: 180 KGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLMENTDKLKGSVKKK-IEENKEIAIQ 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           S++L  +  DVPI + L+ +I  D +   L+   +   FT L++R+    D D
Sbjct: 239 SKRLATIIRDVPIEVDLDSMIFGDYDKDELLDKFRYFGFTSLLSRLVDLVDSD 291


>gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519]
 gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii]
          Length = 888

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/536 (37%), Positives = 329/536 (61%), Gaps = 11/536 (2%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS 501
           N   K++L  LK  FEN    K G+N+K D L+L  Y I++ G + DI +  Y++DS  S
Sbjct: 358 NIEEKDVLK-LKDVFENPEIKKYGYNLKNDCLILKPYEINLTGLYFDIAIAEYLIDSTSS 416

Query: 502 SHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
           +++I  IA K+      + +E+L   KS      +SD+Q+  +A    +++ +    L  
Sbjct: 417 NYEIKDIALKYNLGDVLSLEELLGKGKSKKDFKDLSDAQISGYACSVLDIVDKGKEALIT 476

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
            +    + +++  ++ P++++++ ME  GI  D+++L ++  +    + +LE +IY+ +G
Sbjct: 477 TIENYNMHNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLEASIYEYAG 536

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E FN++SPKQLG ILF KL  P+  KTKTG + T A+ LE +    +PII  I  +RQ +
Sbjct: 537 ENFNINSPKQLGHILFDKLGLPAIKKTKTG-YSTNAEVLEAL-SDKHPIIDKITLYRQYT 594

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K++STY D L N IN +T R+H+ ++   T TGR++S EPN+QNIP++ ++G+++R+ F+
Sbjct: 595 KLQSTYVDGLLNIINPKTGRIHSSFNQTITTTGRISSTEPNMQNIPVRLEIGRELRKVFV 654

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           +P    L+ ADYSQIELRILAHIA    L   F    DIH + A+E+F V +++V+ ++R
Sbjct: 655 APEDMYLVDADYSQIELRILAHIANDEGLIDAFSKGDDIHTITASEVFNVPLDEVTKELR 714

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
             AK +NF I+YGIS F L+  L I +  A +YI  YF R+P + +Y+E      + +GY
Sbjct: 715 SAAKAVNFGIVYGISDFGLSNNLGISKQVAKEYIDNYFARYPYVKKYMEDIVEKAKNDGY 774

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           VET  GRR +  E+ S    ++N+ +R A+N PIQGSAAD+ + AM+ V+  L+   L +
Sbjct: 775 VETYIGRRRYIPELGSNNFIMKNLGKRLAMNTPIQGSAADVIKIAMVKVYARLKSEGLKS 834

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K++LQ+HDEL+ E P+ E +  + ++   ME A    ++L V L V+ K   +W E
Sbjct: 835 KLILQVHDELIIESPDSEKSYVADLLKEEMESA----VDLNVKLTVDAKWGKSWYE 886



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 166/288 (57%), Gaps = 10/288 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S + RA+YA P L  K  G   NAI GF N+L+K++   +     SH +V FD
Sbjct: 16  LILIDGNSLMNRAYYALPELMNKK-GQHTNAIYGFANILFKIMDTYK----PSHISVAFD 70

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y  YK NR K+P+ L  Q+  ++    AFGI  IE++G+EADD+I T   
Sbjct: 71  LKAPTFRHKQYDAYKGNRKKMPDELREQVEPLKKMIDAFGINRIELEGYEADDLIGTVAK 130

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
             E++GF V II+ DKD +QLVS    +  T K     ++ D + + +K+ + P++ + L
Sbjct: 131 NFEQDGFEVYIITGDKDALQLVSDKIKVLFTKKGISELDEYDPDKMTEKYELTPQQFIDL 190

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+ GIG KT   LL+EYG++ENI +N   I +  + +    Y + A L
Sbjct: 191 KGLMGDQSDNIPGVAGIGEKTGIKLLKEYGSIENIYMNIDEISKSVKAKLEAGY-DMAFL 249

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           S+ L  +  D+P+ + ++    +D +   LIS     EF  LI +V  
Sbjct: 250 SKSLATIMVDIPLELKVDEFEKKDIDKNTLISLFSEFEFNSLIGKVGN 297


>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
 gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
          Length = 875

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/490 (41%), Positives = 308/490 (62%), Gaps = 15/490 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           D+++ SY+LD   SSHD++ IA     K +        K  K  +P   +    + EH +
Sbjct: 392 DLLMASYLLDPSHSSHDLSDIATRKGAKSIQADEAVYGKGAKRKVPETDV----LAEHLV 447

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             +NVI +L   +  +L   +   +++ L+ P+  V+ +ME  G+++D D LK +  +++
Sbjct: 448 RKANVIYELKERMEEELKKNEQFELFKDLEMPLSVVLGRMETEGVKVDIDQLKAMGEDLA 507

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             L  LE++I++ +G  FN++SPKQLG++LF KL  P   KTKTG + T+A  LE++   
Sbjct: 508 SRLAELEKHIHEHAGVSFNINSPKQLGEVLFEKLGLPVIKKTKTG-YSTSADVLEKL-AE 565

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+ II++IL +RQL K+ STY + L    +K T ++HT ++ A T TGRL+S +PNLQNI
Sbjct: 566 DHEIIRHILHYRQLGKLNSTYIEGLVKVTHKGTSKIHTRFNQALTQTGRLSSTDPNLQNI 625

Query: 724 PIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           PI+ + G+KIR+AFI S    K+++ADYSQIELR+LAHIA+   L   F+  +D+H   A
Sbjct: 626 PIRLEEGRKIRKAFIPSEEGWKILAADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKTA 685

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            ++F V+ E V+  MRR AK +NF I+YGIS + L+  L I R EAA +I+RY   +P +
Sbjct: 686 MDVFHVSEEDVTSMMRRSAKAVNFGIVYGISDYGLSQSLGITRKEAAKFIERYLASYPNV 745

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            EY+E+     R+NGYV T+  RR +  E+ S   + R+  ER A+N PIQG+AADI ++
Sbjct: 746 AEYMERIIEEARENGYVSTLLNRRRYLPELTSRNFNQRSFAERTAMNTPIQGTAADIIKK 805

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ +   LE+  L +++LLQ+HDEL+FEVP EE+    +I+   ME A    + L VPL
Sbjct: 806 AMVEMALRLEEANLKSRLLLQVHDELIFEVPPEEVDEMMKIVPEVMENA----VELAVPL 861

Query: 963 KVNIKVSNNW 972
           KV+I   + W
Sbjct: 862 KVDISAGDTW 871



 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 175/304 (57%), Gaps = 9/304 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML K++Q  +     +H  V FD
Sbjct: 4   LILIDGNSIAYRAFFALPLLNNDK-GVYTNAVYGFTTMLLKIIQEEK----PTHMLVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y +YK  R K P  L  Q PL+R    AF I   E+  +EADDII T + 
Sbjct: 59  AGKTTFRHKTYEEYKGGRQKTPPELSEQFPLIRELLDAFNIKRFELDNYEADDIIGTLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AEKE + V ++S DKDL+QLVS    +  T K     E  D   + +K+GI P +++ +
Sbjct: 119 EAEKEKWEVKVVSGDKDLLQLVSDYVTVVLTKKGITNVESYDEALIDEKYGIKPHQIIDM 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GDS DNIPG+PG+G KTA  LL+++G +EN+L +   +  KK +E + E  E A +
Sbjct: 179 KGLMGDSSDNIPGVPGVGEKTALKLLKQFGTIENVLDSVDDVSGKKLKEKLSENKEQALM 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++L  + T+VP  + L+ L   + +  +++S  K LEF  L+++  T        +E +
Sbjct: 239 SKELATIFTEVPYNLTLDELKFGEYDEEKVVSLFKELEFKSLVDQFDTGVSAAEKELEEL 298

Query: 303 VLDI 306
             D+
Sbjct: 299 SFDV 302


>gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797]
 gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797]
          Length = 900

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 324/533 (60%), Gaps = 11/533 (2%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507
           +L +LK   E+   L    NIKYD +VL R G+ ++G   D M+ SY++ +G   H +  
Sbjct: 367 VLEHLKPILEDPEILITNQNIKYDMVVLMRVGVFLQGVSIDPMVASYLISAGERGHSLDK 426

Query: 508 IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +++++L++T     E++ S K    + ++   +V E+A+E++ +  QL  +L+ +L    
Sbjct: 427 LSERYLNHTMIPISELIGSGKQQKKMFEVDVDKVAEYAVEDAEIAWQLSRILQDELKHAG 486

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +Y  L++P+I ++++ME TGI++D   LKQ S  + K L +L   I++++G +FN++
Sbjct: 487 LWELYWELERPLISILAEMEFTGIKVDTAELKQQSQLLEKRLTTLISEIHEIAGHEFNIA 546

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SP QL  +LF +L  P   KTKTG   +T Q + +     + +   I E R LSK+KSTY
Sbjct: 547 SPLQLRTVLFEELNLPVFKKTKTG--PSTDQSVLEKLAPLHALPARITEHRHLSKLKSTY 604

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK- 743
            D+LP  +N  T R+H  ++     TGRL+S +PNLQNIP++T  G++IR+AFI      
Sbjct: 605 LDALPGLVNPETGRIHASFNQVVAATGRLSSSDPNLQNIPVRTQEGRQIRKAFIPQDENW 664

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           +L+ ADYSQIELRILAH+++   L Q F    DIH  VA++IF V  ++V   MRR AK 
Sbjct: 665 RLLCADYSQIELRILAHLSQDVALSQAFREGADIHTAVASDIFRVPHDQVDSDMRRTAKA 724

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF +IYG SPF L+  + IP+SEAA +I+ YF R+ G+ E++++      +  +VETI 
Sbjct: 725 VNFGVIYGQSPFGLSEAIGIPQSEAAGFIEDYFVRYQGVREFLDQILEDCAKQKFVETIC 784

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GR+     +        N+ ER AIN  IQGSAAD+ ++AM++V   ++  +   +ML+Q
Sbjct: 785 GRKREIQGVRGGVQKQLNMPERTAINTVIQGSAADLIKQAMLNVSDRIKQEQHPGRMLMQ 844

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           IHDELVFEVP   + T   I+   ME A    ++L VPL V++    NW E+N
Sbjct: 845 IHDELVFEVPLTALDTLGLIVREEMESA----MDLEVPLIVDMSSGLNWLEQN 893



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 167/296 (56%), Gaps = 6/296 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+++D  S +++ F+A P ++    G P NAI G    +  +++    + +   FA+   
Sbjct: 5   LYIIDTFSLVFQVFHAVPAMTGP-TGQPTNAIFGITRDILNIIKTHSPDYLI--FAMDSS 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P    RN++Y +YKANR  +PE L+PQ+P +    + F +P IE  G+EADD+ AT   
Sbjct: 62  GPGT--RNDLYSEYKANRSAMPEDLVPQIPHIMDVVKGFQVPVIECPGWEADDVFATIAR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +A ++G   TI++ DKD  QL++ +  LY+  K + +D E V   WG+ P++++  Q+L 
Sbjct: 120 LANEKGIETTIVTNDKDARQLINDSIRLYNIRKNQFMDAEAVQADWGVRPDQVIDFQSLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DNIPG+P +G K A  L++++G LE +L NA + K  K ++N+ E+A+ AR+SR+L
Sbjct: 180 GDSVDNIPGVPLVGPKKAQTLIEQFGTLEGVLANADKAKGPKLQQNLKEFADQARMSREL 239

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           V L   + + I  E   L   +  RL        F +    +      +A   EPV
Sbjct: 240 VTLNQSLDLNINWEASRLTHPDRERLHQLFVDFGFRRFAEDMKEVLSTEAPP-EPV 294


>gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
          Length = 880

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/439 (45%), Positives = 291/439 (66%), Gaps = 12/439 (2%)

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           Q+ A++ S  + +L   L  KL    LL++Y+ ++ P+I V++QME+ G+++D+D L  +
Sbjct: 441 QKLAVKTSK-LFELETKLITKLKENNLLNLYQEIELPLIKVLAQMELNGVKVDKDWLANL 499

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S ++ K L  + +  + L+GE+FNL+SPKQLG+ILF KL  P   +TKTG + T A  LE
Sbjct: 500 SEKLGKRLAIITDKAHKLAGEEFNLNSPKQLGEILFEKLGLPVIKRTKTG-YSTNASVLE 558

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++  G + II  I E+R+L+K+KSTY DSLP  IN  T ++HT ++   T TGRL+S EP
Sbjct: 559 KLE-GKHEIIPLISEYRELAKLKSTYIDSLPPLINDETAKIHTSFNQMVTATGRLSSTEP 617

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSL 775
           NLQNIPI+T+ G++IR+AFI  P++    L++ DYSQIELR+ AH++    L + F N  
Sbjct: 618 NLQNIPIRTEEGREIRKAFI--PSRSDMILLAVDYSQIELRVFAHLSGDQKLKEAFNNEA 675

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   AAE+F V  E V+P +RRHAK INF I YG+S + L+  L IP  EA  YI +Y
Sbjct: 676 DIHTETAAEVFEVKAEAVTPDLRRHAKVINFGIAYGMSAYGLSQDLDIPVEEAQTYIDKY 735

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+E+T   V++ GY ET+FGRR +  EINS     R+  ER AIN P+QG+
Sbjct: 736 FERFSGVKKYMEQTIEKVKKLGYAETMFGRRRYIPEINSSNYHRRSFAERTAINTPVQGT 795

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +++M+ V+  L+  +L   +LLQ+HDELVFEV   ++  A+++I   ME      
Sbjct: 796 AADIMKKSMLDVYSCLKKSELDLNILLQVHDELVFEVNRNDLDEAAELIKEKMENTT--- 852

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL V++++  NW++
Sbjct: 853 -KLDVPLIVDLQIGENWRD 870



 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 182/308 (59%), Gaps = 9/308 (2%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +++  LFL+DG S  +RAFYA PLL+    G   NA+ GF  ML+ L      E      
Sbjct: 7   KEQKTLFLLDGHSLTHRAFYALPLLTNDQ-GEYTNAVFGFVRMLFSLTD----EWQPDRM 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR++ YP+YK NR K+PE L+PQ+ L++   +   IP +   G+EADD++
Sbjct: 62  IITFDKKEPTFRHQEYPEYKGNRKKMPEELVPQINLLQETIKKLEIPMVSKVGYEADDLL 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPE 177
            T +  AEK+G+ V I++ D+D +QLVS    +  T K      K D E V++K+ + PE
Sbjct: 122 GTLSKQAEKKGYKVYIVTGDRDALQLVSENVNILYTKKGISNLIKFDEEKVMEKYELTPE 181

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++  + L GDS DNIPG+PGIG KTA  LL+E+G +E IL N  ++  KKR+EN+ +Y 
Sbjct: 182 KLIDRKGLMGDSSDNIPGVPGIGKKTALKLLKEFGTMEEILANIDQVSGKKRKENLYKYT 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E ARLS +L  ++ DVPI I  E   L+  +  ++    K L FT L++R     +    
Sbjct: 242 EQARLSYRLGKIKRDVPIEIDFEKCRLDLYDDQKVAEQFKNLGFTSLLDRFDFKEELSLE 301

Query: 298 NIEPVVLD 305
           N+E  +L+
Sbjct: 302 NLEFELLN 309


>gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046]
          Length = 876

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/529 (40%), Positives = 320/529 (60%), Gaps = 21/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK + ++E   K   + K  + +LHR GI ++G E D++L SY+L    S  D+A++A++
Sbjct: 356 LKAWLQDETKKKYIVDSKATQAMLHRLGIELKGVEFDLLLASYILKPSISGDDVATLAKE 415

Query: 512 --WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             +      E +  K  K  +P        V EH    +  + +L  LL  KL   +   
Sbjct: 416 FGYQDVQSNEAIYGKGAKWVVP----GADHVAEHVSRKAVAVWKLQPLLDQKLKENEQFE 471

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y+ L+ P+  ++ +ME  GI ++ D L+Q+  ++   L  +E  IY+L+GEKFN++SPK
Sbjct: 472 LYKELELPLAHILGKMESEGITVNIDTLRQMGDDLKAKLEVMEATIYELAGEKFNINSPK 531

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T A  LE++   ++ I+K ILE+R L+K++STY + 
Sbjct: 532 QLGVILFDKLGLPVIKKTKTG-YSTAADVLEKLQS-EHDIVKYILEYRTLAKLQSTYIEG 589

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   ++K   +VHT +  A T TGRL+S  PNLQNIPI+ + G+KIR+AF+  P+KK   
Sbjct: 590 LIKEVHKEDSKVHTRFQQALTSTGRLSSTNPNLQNIPIRLEEGRKIRKAFV--PSKKDWI 647

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKT 803
           L +ADYSQIELR+LAH+     L + F+  +DIH   A ++F + N ++V+  MRR AK 
Sbjct: 648 LFAADYSQIELRVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKA 707

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EAA +I+ Y   FPG+  Y++ +    ++ G+V TI 
Sbjct: 708 VNFGIVYGISDYGLSQSLDITRKEAAIFIENYLQSFPGVKNYMDTSIEEAKKAGFVTTIL 767

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  LE   L TK+LLQ
Sbjct: 768 NRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMNARLEQEGLQTKLLLQ 827

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE P+EEI    +I+   ME A    I L VPLKV       W
Sbjct: 828 VHDELIFEAPKEEIEILERIVPEVMENA----IKLSVPLKVEFSYGATW 872



 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 108/285 (37%), Positives = 158/285 (55%), Gaps = 9/285 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+    G+  NA  GF  ML K++     E   +   V FD
Sbjct: 6   LLLLDGNSLAYRAFFALPLLTND-SGIHTNATYGFTTMLQKII----GEENPTQMLVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E + +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T   
Sbjct: 61  AGKTTFRHESFGEYKGGRQKTPPELSEQFPYIRKLIDAYNIKRYELEMYEADDIIGTLAK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            A  +G  V ++S DKDL QL +    +Y T K     EK    H+ +K+G+ PE+++ +
Sbjct: 121 QAAGQGIEVIVVSGDKDLTQLATEDVTVYITRKGITDIEKYTPAHIEEKYGLTPEQIIDM 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+PG+G KTA  LL+E+G +E +      +K  K +E +++  E A L
Sbjct: 181 KGLMGDQSDNIPGVPGVGEKTAIKLLKEHGTIEKLYEEMDSLKASKMKEKLVDNEEMAHL 240

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           S+KL  + TD P+TI L+ L     +   L++  + L F  LI +
Sbjct: 241 SKKLATIHTDAPLTISLDDLAYAGPDEEALLNVWQELGFKSLIEK 285


>gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
          Length = 898

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/611 (35%), Positives = 354/611 (57%), Gaps = 29/611 (4%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T I   +D+++W+  L    + S   + D  D++ S+   +A+ T D         E  +
Sbjct: 310 THISAAEDLKKWIAYLLNQKNISVLQLIDREDSYSSRLSGLALCTGD---------EVFY 360

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FE 487
           I+         TG       I + LK+ ++NE+  KIGHNIK     L ++ + + G + 
Sbjct: 361 IE---------TGTALPENLIATELKELWQNENIHKIGHNIKEFITWLLKHDVELNGLYF 411

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D M+  Y++DS R+ + IAS++ K+L+ +     E+L   K +    +I   ++++++  
Sbjct: 412 DTMIAEYLIDSIRNGYPIASLSHKYLNRSVPSLDELLGKGKGAKKYSEIPPERLKDYSAY 471

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           N   I  +W + +  L   +   ++  ++ P+I V++ ME  G ++D   L +    +  
Sbjct: 472 NVKAIFDIWPMQKKVLQENRQEELFNDIELPLITVLASMEYHGFKVDAAKLHEYGEVLLS 531

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  LE+ IY L+GE+FN++S KQLG ILF KLK P    TKTG + T  + LE++    
Sbjct: 532 RIKDLEKVIYMLAGEEFNINSTKQLGTILFEKLKLPVVKSTKTG-YSTDVEVLEELYY-K 589

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           + II  I+E+RQL+K+ +TYA+ L   IN  T ++H+ ++   T TGR++S EPNLQNIP
Sbjct: 590 HDIIPCIIEYRQLTKLYTTYAEGLEKVINPVTGKIHSSFNQTVTATGRISSTEPNLQNIP 649

Query: 725 IKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           ++ ++G++IR+AFI S      + ADYSQIELR+LAHI     L   F    DIH   A+
Sbjct: 650 VRHEMGREIRKAFIPSSENAVFVDADYSQIELRVLAHITGDEALINAFVKGEDIHTATAS 709

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            +F V  E V+P++RR AK +NF I+YGIS + LA  L I R EA  YI  YF ++P + 
Sbjct: 710 LVFDVAPEDVTPELRRKAKAVNFGIVYGISDYGLARDLGITRKEAKRYIDDYFAKYPKVK 769

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y+++     ++ GYVET+F RR +  E+ S     R+  +R A+N PIQG+AADI + A
Sbjct: 770 TYVDEIVRVGQEQGYVETLFHRRRYLPELASKNFHQRSFGKRVAMNTPIQGTAADIIKIA 829

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ V+K+L++  L ++++LQ+HDELV E  E+E+ T  +++   ME+A    + L VPL 
Sbjct: 830 MVKVYKALKESGLKSRLILQVHDELVIETFEDELETVKELVKKCMEEA----VELSVPLV 885

Query: 964 VNIKVSNNWQE 974
           V++ +  NW E
Sbjct: 886 VDVSIGKNWYE 896



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 135/407 (33%), Positives = 213/407 (52%), Gaps = 40/407 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L+DG+S + R FYA    S      GL  NA+  F N+L K ++    E    + AV 
Sbjct: 5   IILIDGNSILNRGFYALSGRSMLTTSTGLYTNAVFAFVNILNKYIE----EENPDYIAVA 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+ +Y  YKA R  +P+ L  Q+PL +   +A  I  IE +G+EADDII + 
Sbjct: 61  FDLRAKTFRHGLYEGYKAQRKGMPDELAMQIPLAKEVLRAMNIAIIEHEGYEADDIIGSL 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           +  AEKE F V I++ D+D  QL+S       P+T    T +    D + +I K+G+ P 
Sbjct: 121 SLKAEKENFDVIILTGDRDSFQLISDRVKVILPSTKAGKT-ETNVYDKQAIIDKYGVLPH 179

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++ L GDS DNIPG+PG+G KTA  L+  YG LE +  +   IKQ K + +++EY 
Sbjct: 180 QLIDVKGLMGDSSDNIPGVPGVGEKTALSLISAYGTLEGVYEHIDEIKQPKLKASLIEYK 239

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----ATTYD 293
           + A LSRKL  +  ++ +   LE L  ++ N   L++  + LEF  +I+++    A   +
Sbjct: 240 DQAFLSRKLGTIVRNLELCASLEDLKRKEINRKELLNVFRKLEFESIISKMNLASAEVTE 299

Query: 294 CDAANIEPVVLDINTTEN-----------KGIAIETEIDRDTTIKTSQFSSLS----DQT 338
              A  E  +  I+  E+           K I++   IDR+ +  +S+ S L+    D+ 
Sbjct: 300 LPPAPEELKITHISAAEDLKKWIAYLLNQKNISVLQLIDREDSY-SSRLSGLALCTGDEV 358

Query: 339 SKINSEQT-PQKLFLERLQKLSQYPINNDSYTKIV-NTKDIQQWVQK 383
             I +    P+ L    L++L Q    N++  KI  N K+   W+ K
Sbjct: 359 FYIETGTALPENLIATELKELWQ----NENIHKIGHNIKEFITWLLK 401


>gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26]
 gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932]
 gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55]
 gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79]
 gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291]
 gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58]
 gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291]
          Length = 882

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/530 (39%), Positives = 330/530 (62%), Gaps = 11/530 (2%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS-SHDIAS 507
           +S L   F N    K G+N+K D + L  Y I++   + DI +  Y++DS  S S+D ++
Sbjct: 357 VSKLDSIFSNNEIKKYGYNLKDDYISLKPYNINLENMYFDITIAEYLIDSTSSTSYDCSA 416

Query: 508 IAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           IA K+LS    +++E+L     S   + +    + E+  +    + +   ++   L+   
Sbjct: 417 IAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDLAEYMGQIICTVKETIPMMERSLMDMS 476

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +  ++  ++ P+++V+  ME  GI++D+ +L ++S E  + + +LE+ IY+LSGE FN++
Sbjct: 477 MDGLFYHVEMPLVEVLGHMEYEGIKVDKSILDELSVEFKEIIATLEKEIYELSGEPFNIN 536

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL+ P   KTKTG + T A  LE++    +PII  I E+RQ+ K+ STY
Sbjct: 537 SPKQLGVILFEKLELPIIKKTKTG-YSTNADVLEKLR-DKHPIIDKITEYRQIVKLNSTY 594

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            + L N IN  + R+H+ ++   T TGR++S EPNLQNIPIK ++G+KIR+ FI+    K
Sbjct: 595 VEGLLNIINPESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCK 654

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+ ADYSQ+ELR+LAH+++   + + F++  DIH   A+++F V +E V+ ++R  AK +
Sbjct: 655 LVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAV 714

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYG S F LA  L IP  +A +YI+ YF ++  I E+++ T     ++GY  TI  
Sbjct: 715 NFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S     RN  +R A+NAPIQGSAADI + AMI+VHK LE++ L +K++LQ+
Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+ E  ++EI    +I+   ME A    +N+ V L V++ V ++W E
Sbjct: 835 HDELIVEAIDDEIDIVKKIVKEEMENA----VNMDVHLDVDLNVGSSWYE 880



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 111/296 (37%), Positives = 170/296 (57%), Gaps = 10/296 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L ++DG+S I RAFYA P ++ K +GL  NAI GF  ML+K++   +     +H +V
Sbjct: 2   EKKLIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+  Y +YKA R  +P+ L  QL  ++     F I  +EI G+EADDII T
Sbjct: 57  AFDRKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFKINRLEIDGYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  AE  G+ V I++ DKD +QL S  T    T K     E+ +   VI+K+ + P + 
Sbjct: 117 VSKKAENNGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPAQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PGIG KT   L++E+ ++EN++ N  ++K   +++ I E  E 
Sbjct: 177 IDLKGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLIENTDKLKGSVKKK-IEENKEI 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           A  S++L  +  DVPI + L+ ++  D +   L+   +   FT L++R+    D D
Sbjct: 236 AIQSKRLATIIRDVPIEVDLDSMVFGDYDKDELLDKFRYFGFTSLLSRLVDLVDSD 291


>gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 896

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 338/571 (59%), Gaps = 26/571 (4%)

Query: 418 DDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           D    K E + I   +H  +          GK    + +L  +K  FEN      GHN+K
Sbjct: 337 DIQPLKAELVGIGFGIHPKKAWYVPLNGKLGK----QRVLEGVKPLFENSAIGFYGHNVK 392

Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
           YD  VL   GI ++    D +L SY+L++    H +  +A ++         E++   K+
Sbjct: 393 YDWHVLQNEGIQIQNICFDTILASYILNAHSRQHSLEVLALEYFGKVTIPISELIGKGKN 452

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            + +  +   +V E+  E+ +   +L  +L  +L    LL++Y +++ P++ V+++ME  
Sbjct: 453 VLSMRDVPIERVTEYCCEDVDFTCRLKEVLEKQLKERDLLNLYHQIELPLLVVLAKMERR 512

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI +D   L+Q+S E+++ L +L+E+IY ++GE+FNL+SPKQ+ ++LF KL  P+  KT 
Sbjct: 513 GIYVDIPYLEQLSKELTQELKTLQESIYTMAGEEFNLNSPKQVSELLFIKLGIPAPKKTA 572

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   T+A+ LE +   D P+   ILE+R L K++STY D+LP+ +  RT R+H+ ++ +
Sbjct: 573 TGH-STSAEVLEFLK-NDYPLAGKILEYRLLEKLRSTYVDALPSQVIPRTHRIHSTFNQS 630

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAK 763
              TGRL+S +PNLQNIPI+T+ G+KIR AF   P K+    +SADYSQIELR+LAH+++
Sbjct: 631 VAATGRLSSQDPNLQNIPIRTEEGRKIRGAF--RPEKEGWSFLSADYSQIELRLLAHLSQ 688

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F+N+ DIH   AA +F + +E+VS + R  AK INF IIYG   F LA +L I
Sbjct: 689 DPVLMAAFQNNEDIHTYTAASMFEIPLEQVSKEQRYQAKAINFGIIYGQQAFGLARELGI 748

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              +A+ +I  YF R+P I EY++++K   R  G   T+ GR     EI S    IR   
Sbjct: 749 EVKQASKFITMYFQRYPKIKEYLDQSKENARATGKSVTLTGRERIIPEILSKNMQIRAAA 808

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N P+QG+AAD+ + AM+ + + +E   L   M+LQIHDEL+FE+P+EEI+  SQ+
Sbjct: 809 ERLAVNTPLQGTAADLIKMAMLKMDEEIEKQHLKGFMILQIHDELIFEIPDEEISLFSQL 868

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   M+   L    L V L V+I +  NW+E
Sbjct: 869 VPEVMQSVML----LNVSLVVDINIGKNWKE 895



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 153/258 (59%), Gaps = 9/258 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           ++L+++D S F+YR+++A   ++ K  G   NA+ GF   + KL ++   E    H   +
Sbjct: 8   HNLYVLDASGFLYRSYFAIRNMTNKQ-GESTNALYGFIRSVLKLFKDFNPE----HLVCV 62

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R E+YP+YKA+R  +P  L  Q+   +      GIP + +   EADD + T
Sbjct: 63  FDGPNNAKKRLELYPNYKAHRSAMPPDLRYQIEWAQDFCSLMGIPYLSVPEVEADDTMGT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCL 182
               AE++G    + ++DKD+ QLV+P   L +T K+  I D   + K+WG+PP +MV L
Sbjct: 123 VAKWAEQQGAITYLCTSDKDMAQLVNPHVFLLNTHKDNTILDAASIEKEWGVPPSQMVDL 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            A+TGD+ DNIPG+ G G KTAA LL+++G+L+ IL +   +  KK++E +   A+ AR+
Sbjct: 183 LAMTGDASDNIPGLTGFGEKTAAALLRQFGSLDYILAHPEEVPGKKKQETLQTEADLARI 242

Query: 243 SRKLVMLRTDVPITIPLE 260
           SR LV +  D+ + IP E
Sbjct: 243 SRDLVTI--DLSVEIPQE 258


>gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
 gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
          Length = 886

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/527 (40%), Positives = 320/527 (60%), Gaps = 16/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+    K   N K   + LHR G+ + G + D++L SY+L++  +++D+  +A  
Sbjct: 364 LKKLLEDPAVEKDVFNAKAQLVGLHRLGVDLAGVDFDLLLASYLLNTSENANDLGVLAAA 423

Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +   T +E+  K  K +IP D   D     H  + +  I  L   L  +L   + L 
Sbjct: 424 HDYHQVQTDEEVYGKGAKRAIPAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLP 480

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE +++P+  V++ MEITGI +D   LK++ +++ +    LE+ IY  +GE+FN++SPK
Sbjct: 481 LYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPK 540

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF K+K P   KTKTG   +TA D+ +      PI+++IL +RQ+SK++STY   
Sbjct: 541 QLGVILFEKMKLPVIKKTKTGY--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITG 598

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   I++  Q++HT Y    T TGRL+S++PNLQNIP++ + G++IRRAF  S P  K+ 
Sbjct: 599 LLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIF 658

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805
           S+DYSQ+ELR+LAH+     +   F    DIH   A  IF +  E +V+P MRR AK +N
Sbjct: 659 SSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVN 718

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + LA  + + R +A ++I+ YF  FPG+ +Y+       +Q GYVET+  R
Sbjct: 719 FGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR 778

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  EI++   + R+  ER A+N PIQGSAADI + AMI + K+L++  L  +MLLQIH
Sbjct: 779 RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIH 838

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DELVFE PEEEI T  +++   M+ A    + L VPLKV  K    W
Sbjct: 839 DELVFEAPEEEIATLEELVPSIMDSA----VKLDVPLKVESKSGATW 881



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 14/310 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L L+DG+S ++RAF+A      K     GL   AI GF  ML  +L+  + ++      
Sbjct: 4   QLLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDAAL---- 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E Y DYK +R K P  L+ QLP VR   +A G+ A E+  +EADDII 
Sbjct: 60  VAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEADDIIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEK 178
           T     ++ GF   I++ D+DL QL +  T +  T     + E+    ++ +K G+ P +
Sbjct: 120 TLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLGVTPRQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GDS DN PG+  IG KTA  L+QEYG+L+ +  N + +K+ KR+EN++   +
Sbjct: 180 YIDVKALMGDSSDNYPGVTKIGEKTAVSLIQEYGSLDGLYENIAAMKKSKRKENLINEEK 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT---TYDCD 295
            AR  + L  +R D P+ I L+ +  +  +   LI   + L+F   +  +         D
Sbjct: 240 IARECQDLATIRRDAPLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQEGGAQVD 299

Query: 296 AANIEPVVLD 305
            A IE  VLD
Sbjct: 300 QAPIEYQVLD 309


>gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 824

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 264/837 (31%), Positives = 418/837 (49%), Gaps = 52/837 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             ++L+D    I++ FY    +S   DG P NA+ G    L  L         A +    
Sbjct: 8   GSMYLLDAHGLIFQMFYGVGPMSAP-DGRPTNAVFGVTRALMNLYDRG-----ADYLIAT 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D+   TFR EI   YKA+R   P  LL Q P+++   +A  +P +   G+EADD++AT 
Sbjct: 62  LDHEKPTFRVEIDAAYKAHRDPPPPDLLLQEPMIQQVMEAMRVPFLIAPGYEADDVMATV 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDIEHVIKKWGIPPEKMVCLQ 183
           +  A   G  V + ++DKD  QL++    + +  K+ E +D   V+  WG+ P+++V  Q
Sbjct: 122 STQAAARGLDVFLCTSDKDCRQLITDKVKMLNLRKDYEALDAAGVLADWGVRPDQVVDFQ 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-KRRENILEYAETARL 242
           AL GDS+D + G+ G+G KTAA  LQ++G L+ ++ NA +     K R+ + +   +  L
Sbjct: 182 ALVGDSVDGVKGVAGVGPKTAAKWLQQFGTLDVLIANADQAAGGPKTRQALKDAVASGAL 241

Query: 243 --SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA--- 297
             S++LV L  DVP+    E     D +G RL+       F     RV  T     A   
Sbjct: 242 AKSKRLVCLDRDVPVAFDWEGWRRRDWDGQRLLELFHEFGFRGFAERVRKTLTRSGAQKN 301

Query: 298 ---------NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                    N  P V D   T  +G+     +        SQ          +  E+ P 
Sbjct: 302 ADALATAGLNAPPPVAD---TVGRGVPGAKAVPAKKAKGKSQ-KPAGPGLFDLLMEEAPG 357

Query: 349 KLFLE--RLQKLSQYPINND----SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  E    +  +  PI++      Y  I   +  +Q+V +L    +  F + T  +D  
Sbjct: 358 AVPTETGASEPTAPAPISDGWSYSGYESITTPERFEQFVGELAQQPAFVFDLETAGLDPV 417

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEH 461
           H   +  + S   QK    +        L V       G+  L  + +L+ LK  FEN  
Sbjct: 418 HDPIVGYSFSW--QKGTAYY--------LPVRAP---AGEPVLNPDTVLAALKPVFENPA 464

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
             K  HNIK+D +VL   G+ + G   D M+  Y+LD G  +H +  +    L +T    
Sbjct: 465 IEKRNHNIKFDLIVLAASGVELAGVAGDSMVAHYLLDPGARAHGLDDLTLDELRHTNISI 524

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           KE++ + K  I + ++  ++V+++A E+++  LQL     P+L    L  +Y+ L+ P+I
Sbjct: 525 KELIGTGKKQITMAEVPVARVRDYACEDADAALQLAAAFEPRLDAAGLRELYDTLEVPLI 584

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+++ME  GI++D   L Q+  ++ + L   E +I+ L+G  FN+ S K+L  ILF +L
Sbjct: 585 RVLAEMEHVGIRVDVPFLVQLGVQMGEELAGYEGDIHALAGRAFNIGSLKELQKILFDEL 644

Query: 638 KFPSGAKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           K P   +T      +T Q+ LE++    + + K +L +R++SK+KSTY D LP   +K  
Sbjct: 645 KLPVQKRTGIKNEPSTDQESLERLAALGHELPKKLLAYRKVSKLKSTYVDVLPALADK-N 703

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT ++ AS  TGRL+S EPNLQN+P +T+ G ++R+AFI      L++ADYSQIELR
Sbjct: 704 GRVHTSFNQASAETGRLSSSEPNLQNVPTRTEQGAQLRKAFIPRDGWVLVTADYSQIELR 763

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           +L H      L   F    D+H  VAA+IF V   +V+   R  AKT+NF ++YG+S
Sbjct: 764 LLTHFCGDDTLRAAFAEDRDVHTAVAAQIFKVPEGEVTKAQRGVAKTVNFGVLYGMS 820


>gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
 gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
          Length = 895

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/528 (39%), Positives = 326/528 (61%), Gaps = 15/528 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+   EN   +K   N+K   ++  R G+++RG E D +L +Y+LD+  + ++++++AQ+
Sbjct: 375 LRSVIENAAIIKNVFNVKAQFVLFKRLGMTLRGVEFDFLLAAYLLDTTDNDNELSTLAQR 434

Query: 512 WLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           +  Y   +     K  K ++P +    S+V  H    ++V++QL       L   +  H+
Sbjct: 435 FDFYVTPDEDIYGKGAKYAVPEET---SRVLVHLAHKADVLMQLEQPAFAALQDHEQTHL 491

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y  ++ P+  V++ ME  GI+IDQ  L+++  ++ + + +++E I+  +GE FN++SPKQ
Sbjct: 492 YTEIELPLAHVLADMEYRGIKIDQTRLREIGTDLEERIDTIKEAIFIEAGEVFNINSPKQ 551

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG +LF K+  P   KTKTG   +TA D+ +      PI+ +IL++RQL+K+KSTY D L
Sbjct: 552 LGILLFEKMGLPVIKKTKTGY--STAVDVLEKLAPQAPIVDHILQYRQLAKLKSTYVDGL 609

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
            + ++++  ++HT +    T TGRL+S++PNLQNIP++T+ G+KIR AF+ S P  ++  
Sbjct: 610 LSVVHEKDSKIHTRFLQTLTQTGRLSSIDPNLQNIPMRTEAGRKIRTAFVPSQPDWQIFG 669

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINF 806
           ADYSQIELR+LAH+     + Q F N  DIH   A  +FG++    V P MRR AK +NF
Sbjct: 670 ADYSQIELRVLAHMTGDKNMQQAFLNGEDIHAETARAVFGLDDNVPVDPLMRRTAKAVNF 729

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS F LA  L I R+EA  +I+ YF  FP IHE++ + K    + G++ETI  RR
Sbjct: 730 GIVYGISDFGLANNLGISRAEAKRFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKRR 789

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  EI S   ++R+  ER A+N+PIQGSAADI + AMI V  +L+++ +  +MLLQ+HD
Sbjct: 790 RYLPEIGSKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVADALQENGMQARMLLQVHD 849

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+FE P +EI   S+++   M+ A +    L VP+ V     N W E
Sbjct: 850 ELIFEAPSDEIAELSELVTRVMDSAVV----LDVPMLVESHSGNTWYE 893



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 165/292 (56%), Gaps = 15/292 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R   H GL  NA+  F N L +++     + +    AV
Sbjct: 5   LLLIDGNSLAFRAFYAMYNQLDRMISHKGLHTNALVAFNNFLDQIV-----DPMQPDLAV 59

Query: 64  I-FDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           + +D  +   TFR E++P+YK  R K P     Q P +R      G+   E  G EADDI
Sbjct: 60  VAWDAASGKETFRGELFPEYKDGRSKTPSEFQEQFPYLREMVALHGLRNYEQPGLEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T++ + EK G++VTII+ D+DL QL +    +  T K     E+    +++ K+G+ P
Sbjct: 120 IGTFSRMGEKAGYSVTIITGDQDLTQLATEKVTVNVTKKGVTEIEQYTPSYIMDKFGLKP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++  +ALTGD+ DN PG+  +G KTA  LL EY +++N+  +   +KQ K +EN+++ 
Sbjct: 180 LQIIEKKALTGDTSDNYPGVTKVGEKTALKLLTEYHDIDNLYAHIDDMKQSKLKENLIKD 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            E A  +R+L  + TD  + +PLE +     +  +L++F + L+F + + ++
Sbjct: 240 REAAFCARQLATILTDATLELPLEEIEYRHIDYDKLVTFYEDLDFKQQLAKI 291


>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
 gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
          Length = 872

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/489 (44%), Positives = 295/489 (60%), Gaps = 30/489 (6%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ED+ LM Y L +G S  ++   A K                       D+ + E A   +
Sbjct: 411 EDLELMQYALSAGLSQKNLFEEALK----------------------EDNIINESAKIVA 448

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
           N I  L+      L   K   +Y  +D P+  ++ +ME TGI++D + L Q+SAE    +
Sbjct: 449 NFI-SLYKQTILALKDNKAFRLYSDIDLPICFILDKMEKTGIKVDANYLNQLSAEFGAEI 507

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDN 665
             LEE I+ LSG KFN+ SPKQLG ILF K++ P G A  K   + T A+ LE+++    
Sbjct: 508 SILEEEIFALSGTKFNIGSPKQLGKILFEKMQLPFGKAAAKAISYSTAAEILEKLSEHGY 567

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            I   +L WRQL+K K+TY DSLP  I+  T+RVHT +   ST TGRL+S EPNLQNIPI
Sbjct: 568 NIADLLLRWRQLTKFKNTYTDSLPKQIDNITRRVHTTFLQTSTTTGRLSSQEPNLQNIPI 627

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           ++  G KIR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N  DIH   A +I
Sbjct: 628 RSREGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIHTQTACQI 687

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F +   +++ + RR AK INF IIYGIS F LA QL +  SEA++YIK+YF  + G+ EY
Sbjct: 688 FNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNSEASEYIKKYFAEYKGVQEY 747

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG+ ADI + AMI
Sbjct: 748 MEQTKAFASSNGYVINFFGRKCFIPLIHDKK--LKQFAERAAINAPIQGTNADIIKIAMI 805

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           ++ + +  +KL T+++LQIHDEL+FEVPE+E+   + II   ME +     N+ VP+   
Sbjct: 806 NLDQEIAKNKLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIMENST----NMDVPIITE 861

Query: 966 IKVSNNWQE 974
           I+  NNW E
Sbjct: 862 IRAGNNWME 870



 Score =  214 bits (546), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 122/314 (38%), Positives = 181/314 (57%), Gaps = 6/314 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG   ++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGLVFRAYYAQQHLTSPK-GEPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+ IYP+YKANRP  PE L+ QLPLVR       +P +E  G+EADDI
Sbjct: 56  VAVVFDSGGNNFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNLPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V +IS+DKDL+QL+S    +YD +K + I  + ++KK+G   +K+ 
Sbjct: 116 IATFAAKTAALGEDVVVISSDKDLLQLMSENIKIYDPLKGKYITEDDIVKKFGTTSDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + ALTGD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E A
Sbjct: 176 EVMALTGDRSDNIPGVPSIGPKTASSLITQFGSIENIFNSLDQVSSVKQRETLQNSKEDA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S +L+ L +++ +   L +L     N  +L  FL+   F  L  R    +D    N  
Sbjct: 236 LISWQLIGLDSNIDLDFQLNNLEWLPPNSDKLTEFLQKYGFKSLYKRAENLFDI-KINDH 294

Query: 301 PVVLDINTTENKGI 314
             ++D   TE K I
Sbjct: 295 KEIVDNKVTEEKEI 308


>gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 886

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/513 (42%), Positives = 319/513 (62%), Gaps = 18/513 (3%)

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEIL- 521
           N K   + L+R GIS+ G + D++L SY+L++  +S+D+  +A +   Y    T +E+  
Sbjct: 379 NAKAQIVGLNRLGISLDGIDFDLLLASYLLNTNDNSNDLGKLAHEH-GYDDVQTDEEVYG 437

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP D   D    +H    +  I QL   L  +L   + L +Y  ++ P+  V++
Sbjct: 438 KGAKRTIPDD---DQLFFQHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLA 494

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEITG+ +D   LK + +++++ L  +EE IY  +GE+FN++S KQLG ILF KLK P 
Sbjct: 495 KMEITGVHVDAQTLKNMGSKLTERLTEIEEQIYQEAGEEFNINSTKQLGKILFEKLKLPV 554

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG   +TA D+ +      PI++NIL++RQ+SK++STY   L   I+   Q++HT
Sbjct: 555 IKKTKTGY--STAVDVLEKLAPQAPIVENILQYRQISKLQSTYIKGLLKVIHSSDQKIHT 612

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++   G+ IR+AF+ S    ++ S+DYSQ+ELR+LAH
Sbjct: 613 RYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRQAFVPSHEGWQIFSSDYSQVELRVLAH 672

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLAT 819
           I     L + F+N  DIH   A  IF +  ++ +   MRR AK +NF I+YGIS + LA 
Sbjct: 673 ITGDHNLQEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAKAVNFGIVYGISDYGLAQ 732

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ + RS+A ++I+ YF  FP + +YI  T  F RQNGYVETI  RR +  +INS   S 
Sbjct: 733 RIHVSRSQAHEFIQNYFKEFPKVKDYIHDTIEFARQNGYVETITHRRRYLPDINSKSFSR 792

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER A+N PIQGSAADI + AMI +   LE  +L  KMLLQIHDELVFE P+EEI  
Sbjct: 793 RSFAERTAMNTPIQGSAADIIKIAMIKMQDELEKRQLKAKMLLQIHDELVFEAPKEEIPV 852

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            S+++   M+ A    + L VPLKV+ K  + W
Sbjct: 853 LSKLVPDVMDSA----VKLSVPLKVDSKYGDTW 881



 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 165/303 (54%), Gaps = 11/303 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S ++RAF+A      K    DGL   AI GF  ML  +L+N   ++      V
Sbjct: 5   LLLIDGNSIVFRAFFAMHNQIDKFTNKDGLHTAAIYGFKLMLDHVLENFHPDAAL----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K PE L  QLP VR   +  G+ + E++G+EADDII T
Sbjct: 61  AFDAGKVTFRTKMYGDYKGGRSKTPEELTEQLPYVRELVKDSGLHSYELKGYEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179
                +  G+   I++ D+DL QL S  T +  T K     E    EHV +K GI P ++
Sbjct: 121 LAKEGDAAGYETLIVTGDRDLTQLASEHTTVAVTHKGVTDTEHYTPEHVQEKLGITPAQI 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+  IG KTA  L++++G++E I  N   +K+ K +E+++E  E 
Sbjct: 181 IDMKALMGDTSDNYPGVTKIGEKTAIKLVKQFGSVEGIYENIDELKKSKMKEHLVEEEEI 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           AR  + L  +  D PI + L  L        +LI F + ++F   + ++A + D     I
Sbjct: 241 ARQCKTLATILRDAPIEVKLADLEYHGPQTEKLIDFYQKMDFQSFLKKMAVSPDDQEPEI 300

Query: 300 EPV 302
            P+
Sbjct: 301 API 303


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/537 (39%), Positives = 321/537 (59%), Gaps = 12/537 (2%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSS 502
           T  + I+   K  FEN   LK+G NIKYD LVL  YG+ ++G   D M+  YVL      
Sbjct: 391 TEAQRIVDKFKPVFENPQTLKVGQNIKYDMLVLANYGVEIQGPMFDTMIAHYVLQP-ELH 449

Query: 503 HDIASIAQKWLSYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
           H +  +A+ +L Y     +E++  + K+   +  +  + +  +A E+++V L+L  +L  
Sbjct: 450 HGMDYLAEIYLHYETIKIEELIGPKGKNQKNMRDLDPANIYRYACEDADVTLKLKNVLEK 509

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +L       ++  ++ P++ V++ ME  G++ID + LK+ S   +  +  +EE ++ L+G
Sbjct: 510 ELKQNDAEALFCDIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHRLAG 569

Query: 619 EKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
            +FN++SPKQ+G++LF +LK      KTKTGQ+ T+ + LE +  G + I++ ILE R L
Sbjct: 570 VEFNIASPKQVGEVLFDRLKIVDKPKKTKTGQYVTSEEVLESLK-GKHEIVEKILEHRGL 628

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            K+  TY D+LP  IN  T  +HT ++   T TGRL+S  PNLQNIP++ + G++IR+AF
Sbjct: 629 KKLLGTYIDALPQLINPETGHIHTSFNQTVTATGRLSSSNPNLQNIPVRNEDGKEIRKAF 688

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
           I     +  SADYSQIELRI+AH++    + + F  + DIH   AA+I+   +E V+ + 
Sbjct: 689 IPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFRANQDIHAATAAKIYKEKLEDVTREQ 748

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R  AKT NF IIYGIS F LA +L I R EA + I  YF  +P + EY++ +    RQ G
Sbjct: 749 RSKAKTANFGIIYGISVFGLAERLGIDRKEAKELIDGYFENYPHVKEYMDSSIQAARQKG 808

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           Y+ET+F RR +  +INS  + +R   ER AINAPIQGSAADI + AMI +++   +  + 
Sbjct: 809 YIETVFRRRRYLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMIRIYRRFREEGIR 868

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +KM+LQ+HDEL F V  EE     QI++  ME A      ++VPL  +     NW E
Sbjct: 869 SKMILQVHDELNFSVVPEEKEKVQQIVIAEMESA----YKMKVPLLADCGWGKNWLE 921



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 27/299 (9%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L  +L    K+   +H  +
Sbjct: 4   LFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAIMGFVNTLEDVL----KKEQPTHIGI 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I T
Sbjct: 58  AFDPAGPTFRHEAYQQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVSGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178
               A ++G    +++ DKD  QLVS    +Y     +K    + +E V  K+ I  P +
Sbjct: 118 LATEAGRQGIRTYMMTPDKDYGQLVSDNVFMYRPKYGDKEFEVMGVEEVKAKFDIQSPAQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
           ++ +  L GD+ DNIPG PG+G KTA  L+ ++G++EN+L +   +K       +  RE 
Sbjct: 178 VIDMLGLMGDTADNIPGCPGVGEKTAQKLIAQFGSIENLLDHTGELKGAIKTKVETNREQ 237

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           IL        S+ L  ++TDVPI + ++ L  E+ +   L    + LEF  L+ RV  T
Sbjct: 238 IL-------FSKFLATIKTDVPIALDMDGLKREEPDKDELKRIFEELEFRSLLERVLGT 289


>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125]
 gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125]
          Length = 876

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/492 (40%), Positives = 316/492 (64%), Gaps = 19/492 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQ---KWLSYTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543
           D+ + SY+LD   S H+++ + +   K   +  + +  K  K  IP +K    ++ EH  
Sbjct: 393 DLQMASYLLDPSTSFHEVSDVTKHHRKGHVHEDEAVYGKGAKRRIPDEK----ELGEHLA 448

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             ++ I QL   +  KL   + L ++  L+ P+  ++ +ME TG+++D + L+Q+  +++
Sbjct: 449 RKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVKVDVEQLEQMGEDLN 508

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             L  LE+ I++L+G  FN++SPKQLG+ILF KL+ P   KTKTG + T+A  LE++  G
Sbjct: 509 ARLEELEQTIHELAGVSFNINSPKQLGEILFEKLQLPVIKKTKTG-YSTSADVLEKL-AG 566

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            + II +IL +RQL K+ STY D L   ++K T +VHT ++ A T TGRL+S +PNLQNI
Sbjct: 567 QHEIIDHILHYRQLGKLNSTYIDGLLKVVHKGTGKVHTRFNQALTQTGRLSSTDPNLQNI 626

Query: 724 PIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           PI+ + G+KIR+AF+  P++K   +++ADYSQIELR+LAH A+   L + F   +D+H  
Sbjct: 627 PIRLEEGRKIRKAFV--PSEKDWFILAADYSQIELRVLAHFAEDEKLMEAFREDMDVHTK 684

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V+ E+V+  MRR AK +NF I+YGIS + L+  L I R EAA +I+RYF  +P
Sbjct: 685 TAMDVFHVSQEEVTSNMRRSAKAVNFGIVYGISDYGLSQNLGITRKEAATFIERYFASYP 744

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY++   +  R+ GYV T+  RR +  ++ S   + R+  ER A+N PIQG+AADI 
Sbjct: 745 KVKEYLDHVIDEAREKGYVTTLLKRRRYLPDLTSRNFNQRSFAERTAMNTPIQGTAADII 804

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AM+ +   +++  L +++LLQ+HDEL+FEVP+EE+    +++   ME+A    + LRV
Sbjct: 805 KQAMVQMASRMDEEDLQSRLLLQVHDELIFEVPKEEVAQMKELVTSVMEQA----VELRV 860

Query: 961 PLKVNIKVSNNW 972
           PLKV++   + W
Sbjct: 861 PLKVDVACGDTW 872



 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 114/298 (38%), Positives = 175/298 (58%), Gaps = 13/298 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML K+L++ +     +H  V FD
Sbjct: 4   LVLIDGNSIAYRAFFALPLLNNDK-GVYTNAVYGFTMMLLKVLEDEK----PTHMVVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y  YK+ R K P  L  Q PL+R    AF I  +E++ FEADD+I T   
Sbjct: 59  AGKTTFRHDTYDAYKSGRQKTPPELSEQFPLIRELLDAFNIARVEVENFEADDLIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDI---EHVIKKWGIPPEKMVCL 182
            A +E F V I + DKDL+Q+VS    +  T K   +ID+   + + +++GI PE+++ +
Sbjct: 119 QASQENFEVKIFTGDKDLLQIVSDHVTVALTRKGITQIDVYDEKGIEERYGITPEQIIDM 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GDS DNIPG+PGIG KTA  LL+EYG++E +L +   I  KK +E + E+ + A +
Sbjct: 179 KGLMGDSSDNIPGVPGIGEKTALKLLKEYGSVEKVLESIDEISGKKMKERLEEHRDQALM 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           S+KL  +  + P+T+  +     + +   ++   K L+F  L+++V    D D   IE
Sbjct: 239 SKKLATIYLEAPVTLDADSFTFGEYDKKEVVKLFKELDFNSLLDKV----DADGEGIE 292


>gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 916

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/527 (40%), Positives = 319/527 (60%), Gaps = 16/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+    K   N K   + LHR G+ + G   D++L SY+L++  +++D+  +A  
Sbjct: 394 LKKLLEDPAVEKDVFNAKAQLVGLHRLGVDLAGVNFDLLLASYLLNTSENANDLGVLAAA 453

Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +   T +E+  K  K +IP D   D     H  + +  I  L   L  +L   + L 
Sbjct: 454 HDYHQVQTDEEVYGKGAKRAIPAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLP 510

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE +++P+  V++ MEITGI +D   LK++ +++ +    LE+ IY  +GE+FN++SPK
Sbjct: 511 LYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPK 570

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF K+K P   KTKTG   +TA D+ +      PI+++IL +RQ+SK++STY   
Sbjct: 571 QLGVILFEKMKLPVIKKTKTGY--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITG 628

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   I++  Q++HT Y    T TGRL+S++PNLQNIP++ + G++IRRAF  S P  K+ 
Sbjct: 629 LLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIF 688

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805
           S+DYSQ+ELR+LAH+     +   F    DIH   A  IF +  E +V+P MRR AK +N
Sbjct: 689 SSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVN 748

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + LA  + + R +A ++I+ YF  FPG+ +Y+       +Q GYVET+  R
Sbjct: 749 FGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR 808

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  EI++   + R+  ER A+N PIQGSAADI + AMI + K+L++  L  +MLLQIH
Sbjct: 809 RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIH 868

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DELVFE PEEEI T  +++   M+ A    + L VPLKV  K    W
Sbjct: 869 DELVFEAPEEEIATLEELVPSIMDSA----VKLDVPLKVESKSGATW 911



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 14/310 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L L+DG+S ++RAF+A      K     GL   AI GF  ML  +L+  + ++      
Sbjct: 34  QLLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDAAL---- 89

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E Y DYK +R K P  L+ QLP VR   +A G+ A E+  +EADDII 
Sbjct: 90  VAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEADDIIG 149

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEK 178
           T     ++ GF   I++ D+DL QL +  T +  T     + E+    ++ +K G+ P +
Sbjct: 150 TLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLGVTPRQ 209

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GDS DN PG+  IG KTA  L+QEYG+L+ +  N + +K+ KR+EN++   +
Sbjct: 210 YIDVKALMGDSSDNYPGVTKIGEKTAVSLIQEYGSLDGLYENIAAMKKSKRKENLINEEK 269

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT---TYDCD 295
            AR  + L  +R D P+ I L+ +  +  +   LI   + L+F   +  +         D
Sbjct: 270 IARECQDLATIRRDAPLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQEGGAQVD 329

Query: 296 AANIEPVVLD 305
            A IE  VLD
Sbjct: 330 QAPIEYQVLD 339


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 229/555 (41%), Positives = 330/555 (59%), Gaps = 42/555 (7%)

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           SFK    +   S   + +  GK    K+I+S+       E+  KIG  I+ D   LH   
Sbjct: 340 SFKEGEGYFIASFDFNDEVKGK---VKDIISF-------ENIKKIGAYIQRD---LHFLD 386

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
             ++G   D+ L SY+L+  R +H +  + +++L+         R S IP         Q
Sbjct: 387 CKIKGEVFDVSLASYLLNPERQNHSLDILIREYLN---------RTSFIP---------Q 428

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A      +  L  +L  ++  E+L  V   ++ P+I V+  ME  GI++D++ LK +S
Sbjct: 429 KYA----AYLFPLKTILEERIKKEELEFVLFNIETPLIPVLYSMEKWGIKVDKEYLKSLS 484

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E  + +  LEE IY+L+G KFNL+SPKQL ++LF +LK PSG K KTG + T++  L+ 
Sbjct: 485 DEFCERIKKLEEEIYELAGMKFNLNSPKQLSEVLFERLKLPSGKKGKTG-YSTSSLVLQN 543

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PI+  IL++R+L K+KSTY D++PN IN +T RVHT ++   T TGR++S EPN
Sbjct: 544 L-LNAHPIVIKILQYRELYKLKSTYIDAIPNLINSQTGRVHTKFNPTGTATGRISSSEPN 602

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK++ G+KIRRAFI+      +S DYSQIELRI+AH+++   L   F+   DIHR
Sbjct: 603 LQNIPIKSEEGRKIRRAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHR 662

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAEIFGV  ++V   +R  AK +NF IIYGIS F L+    I   EA  +I  YF  +
Sbjct: 663 RTAAEIFGVPEDEVDDLLRSRAKAVNFGIIYGISSFGLSETASITPEEAEKFIDSYFKHY 722

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +  +I+KT    R+  YV+T+FGR+ +  EI S    +RN  ER AINAPIQG+AADI
Sbjct: 723 PRVKLFIDKTIYEAREKLYVKTLFGRKRYIPEIRSINKQVRNAYERIAINAPIQGTAADI 782

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI ++K +E+  L +++LLQIHDEL+ EVPEEE+     +    MEK     + L 
Sbjct: 783 IKLAMIEIYKEIEEKNLKSRILLQIHDELILEVPEEEMEFTPLMAKEKMEKV----VELS 838

Query: 960 VPLKVNIKVSNNWQE 974
           VPL V I V  N  E
Sbjct: 839 VPLVVEISVGKNLAE 853



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 123/213 (57%), Gaps = 11/213 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DGSS IYR +YA P L  K+  L  NA+ GF  +L K +++ + + +     + FD
Sbjct: 21  ILVIDGSSIIYRVYYALPPLKTKNGEL-TNALYGFIRILLKAVEDFKPDLLG----IAFD 75

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+ IY +YKA RP + + L  Q+P +R   +   IP +E  G+EADDIIA  T 
Sbjct: 76  RPEPTFRHVIYKEYKAKRPPMKDDLKAQIPWIREFLRLNDIPILEEPGYEADDIIA--TI 133

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKI-DIEHVIKKWGIPPEKMVCL 182
           I   +     I+S D DL+QLVS  T L      + E  I D + V +++G+ P+K+   
Sbjct: 134 IKRYKDDLKYILSGDLDLLQLVSDKTFLIHPQRGITEFTIYDPKAVKERFGVEPKKIPLY 193

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
           + L GD  DNIPGI GIG K A+ +L++   LE
Sbjct: 194 KVLVGDESDNIPGINGIGPKKASKILEKISTLE 226


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/535 (38%), Positives = 322/535 (60%), Gaps = 25/535 (4%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           K++ +   L+ LK   E E   K  H+ K    +LH + I ++    D M+ +Y+L+   
Sbjct: 368 KDSDSDPCLTVLKAICECESVKKYFHDAKQALWMLHHHSIELKALAADTMVSAYLLNPTA 427

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           S++DI  +A + L              +P      ++ +      +  I +L   L  KL
Sbjct: 428 SNYDINDVALEHLGMV-----------LP------AEGETAMASRAEAIRRLAQKLFEKL 470

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
              +   +  +++ P++ ++S+MEI G+ +D+  L+ +S E+     +L   I++L+GE 
Sbjct: 471 AERQEDRLLTQVELPLVRILSEMEIAGVAVDKQGLQDMSVELQTVTETLTTKIHELAGEN 530

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN++SPKQLG ILF KLK P   KTKTG + T A+ LE++   ++ I+  ILE+RQ++K+
Sbjct: 531 FNINSPKQLGPILFEKLKLPVLKKTKTG-YSTDAEVLEKL-AEEHEIVALILEYRQMAKL 588

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           KSTY D L   ++ +T R+H+ +    T TGRL+S EPNLQNIPI+ + G+KIR+ FI  
Sbjct: 589 KSTYTDGLAALVDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLETGRKIRKVFIPR 648

Query: 741 PTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
               LI +ADYSQIELR+LAH+++       F    DIH   A+E+FGV +++V+ +MR 
Sbjct: 649 QRGNLILTADYSQIELRVLAHMSQDESFLDAFRQGQDIHTRTASEVFGVPMDQVTSEMRS 708

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF I+YGIS F LA  L++ R EA  YI  YF R PG+ +YI++     ++ GYV
Sbjct: 709 RAKAVNFGIVYGISDFGLARDLKVSRKEAQGYIDHYFARCPGVRQYIDRVIKEAKETGYV 768

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T+  RR +  E+ S   +IRN  ERAA+N PIQG+AADI + AM+ + + L++  L+++
Sbjct: 769 NTLLNRRRYLPELFSKNFNIRNFGERAAMNTPIQGTAADIIKLAMVKISQQLKEQNLSSQ 828

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+LQ+HDEL+F+ PE EI +   ++  SME A    + L VPL V+IK+  NW E
Sbjct: 829 MVLQVHDELIFDAPENEIESLIMLVRQSMENA----LQLDVPLVVDIKLGPNWYE 879



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/291 (40%), Positives = 163/291 (56%), Gaps = 16/291 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DG+S I+RAF+A PLLS    G+  NA+ GF NM+ K++    KE      AV FD
Sbjct: 6   IIIIDGNSLIHRAFHAIPLLSNSK-GVITNAVYGFTNMVLKVI----KEQEPGLVAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN+ Y  YK  R   P+ L PQ  L R    A  IP  E+ GFEADD+I T   
Sbjct: 61  KGKTTFRNQEYAAYKGTRKATPDELRPQFILARDILGAMRIPFFELDGFEADDLIGTIAC 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE  G  V I++ D+D +QLVSP T +  T K     +  D   V  K+G+ P ++V L
Sbjct: 121 QAEATGLNVLILTGDRDALQLVSPKTKVMLTRKGITEIDLFDEGKVWDKYGVTPSQVVDL 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAET 239
           + L GD+ DNIPG+ GIG KTA++L++EYG++E IL N  ++    QK  R N     E 
Sbjct: 181 KGLQGDTSDNIPGVAGIGEKTASVLIKEYGSVEEILKNIDKLSPRHQKLLRGN----EEI 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           A LS+KL  +  DVP+ + L        +  +L+   K LEF  LI ++ +
Sbjct: 237 ALLSKKLATIIRDVPMELDLSECSWHGPDNQKLLEIAKELEFKTLIKQLTS 287


>gi|256112628|ref|ZP_05453549.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|265994069|ref|ZP_06106626.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765050|gb|EEZ10971.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 281

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/281 (61%), Positives = 226/281 (80%), Gaps = 3/281 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKA 281


>gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
 gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
          Length = 878

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/528 (39%), Positives = 316/528 (59%), Gaps = 25/528 (4%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           EIL+ +++ F +    K  HN K        + ++   F D M+ +Y+++   ++  +  
Sbjct: 360 EILAGVRRLFADAAVAKHMHNAKDFLRWAPDFDLANICF-DSMVAAYLVNPLAANQQLED 418

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  ++L+     +L     + P                ++ I +L+ +LR +L   +L +
Sbjct: 419 VVHQYLNL----VLVPDGPAAPATA-------------ADCIRRLYPVLRAELRGYELDY 461

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++R++ P+  V++ ME+ G+ +D+D L+ +S E       L   I  L+GE FNL+SP+
Sbjct: 462 LFDRVELPLTRVLADMELAGVAVDRDQLEALSEEFGTRAGELAARICTLAGEDFNLNSPR 521

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P+G KTKTG + T A  L  +    + I   +LE+RQL K+K+TYAD 
Sbjct: 522 QLGYILFEKLGLPAGKKTKTG-YSTDAGVLLDL-AEKHEIAALLLEYRQLIKLKTTYADG 579

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLI 746
           L   ++  T R+HT      T TGRL+S EPNLQNIPI+ + G++IR+ FI   P + L+
Sbjct: 580 LAALVDPATGRLHTTLHQTVTNTGRLSSAEPNLQNIPIRMEEGRRIRKVFIPRDPARVLL 639

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQIELRILAH++    L   F +  DIH   AAE+FGV +E V+P+MR  AK +NF
Sbjct: 640 TADYSQIELRILAHLSGDPALITAFRDEQDIHARTAAEVFGVPLEMVTPEMRSRAKAVNF 699

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            IIYGIS F LA  L++ R+EA +YI+RYF R PG+ EYI+      R+ GYV T   RR
Sbjct: 700 GIIYGISDFGLARDLKVTRAEAREYIQRYFARLPGVKEYIDTAIRSARERGYVTTALNRR 759

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
               E+ S   ++R+  ERAA+N PIQG+AADI + AM+ +H  + +  L T M+LQ+HD
Sbjct: 760 RPLPELFSANHTVRSFGERAAVNTPIQGTAADIIKLAMVKIHARMRERNLKTLMILQVHD 819

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+F+VP EE+ T + ++   ME   LP   L VPL V++K+ +NW E
Sbjct: 820 ELLFDVPAEEVCTVAPLVKAEME-TVLP---LNVPLTVDLKIGHNWYE 863



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 105/286 (36%), Positives = 166/286 (58%), Gaps = 10/286 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DG+S ++RA++A P L+    GLP NA+ GF NML +++   + + IA    V FD
Sbjct: 4   FLVIDGNSLLHRAYHAIPPLT-TSGGLPTNAVYGFTNMLLRVITEEQPDMIA----VAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              +TFR++ + +YKA RP +P+ L PQLP+++    A  I   E +G+EADDII T   
Sbjct: 59  KGRITFRHDTFQEYKAQRPPMPDDLRPQLPILKDVLGALRISIHEAEGYEADDIIGTLVR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +A + G    I++ DKD++QLV P T    T K     E+ D+    +++GI P ++  L
Sbjct: 119 VASENGHDSLILTGDKDILQLVGPHTQALLTRKGITELERYDMAKTRERFGITPAQLADL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+PGIG K AA LL ++G LE++L N   +  + R++ +  + + AR+
Sbjct: 179 KGLVGDPSDNIPGVPGIGPKIAARLLADHGRLESVLENLDGLPPRVRQQ-LENFGDQARM 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           S+KL  + T VP     +  +    + P L+     LEF  L+ R+
Sbjct: 238 SKKLATIDTGVPGLGKEDLKVWPGPDKPALLEIFNKLEFRSLVRRI 283


>gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716]
          Length = 886

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/527 (40%), Positives = 319/527 (60%), Gaps = 16/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+    K   N K   + LHR G+ + G   D++L SY+L++  +++D+  +A  
Sbjct: 364 LKKLLEDPAVEKDVFNAKAQLVGLHRLGVDLAGVNFDLLLASYLLNTSENANDLGVLAAA 423

Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +   T +E+  K  K +IP D   D     H  + +  I  L   L  +L   + L 
Sbjct: 424 HDYHQVQTDEEVYGKGAKRAIPAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLP 480

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE +++P+  V++ MEITGI +D   LK++ +++ +    LE+ IY  +GE+FN++SPK
Sbjct: 481 LYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPK 540

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF K+K P   KTKTG   +TA D+ +      PI+++IL +RQ+SK++STY   
Sbjct: 541 QLGVILFEKMKLPVIKKTKTGY--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITG 598

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   I++  Q++HT Y    T TGRL+S++PNLQNIP++ + G++IRRAF  S P  K+ 
Sbjct: 599 LLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIF 658

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805
           S+DYSQ+ELR+LAH+     +   F    DIH   A  IF +  E +V+P MRR AK +N
Sbjct: 659 SSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVN 718

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + LA  + + R +A ++I+ YF  FPG+ +Y+       +Q GYVET+  R
Sbjct: 719 FGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR 778

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  EI++   + R+  ER A+N PIQGSAADI + AMI + K+L++  L  +MLLQIH
Sbjct: 779 RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIH 838

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DELVFE PEEEI T  +++   M+ A    + L VPLKV  K    W
Sbjct: 839 DELVFEAPEEEIATLEELVPSIMDSA----VKLDVPLKVESKSGATW 881



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 14/310 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L L+DG+S ++RAF+A      K     GL   AI GF  ML  +L+  + ++      
Sbjct: 4   QLLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDAAL---- 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E Y DYK +R K P  L+ QLP VR   +A G+ A E+  +EADDII 
Sbjct: 60  VAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEADDIIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEK 178
           T     ++ GF   I++ D+DL QL +  T +  T     + E+    ++ +K G+ P +
Sbjct: 120 TLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLGVTPRQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GDS DN PG+  IG KTA  L+QEYG+L+ +  N + +K+ KR+EN++   +
Sbjct: 180 YIDVKALMGDSSDNYPGVTKIGEKTAVSLIQEYGSLDGLYENIAAMKKSKRKENLINEEK 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT---TYDCD 295
            AR  + L  +R D P+ I L+ +  +  +   LI   + L+F   +  +         D
Sbjct: 240 IARECQDLATIRRDAPLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQEGGAQVD 299

Query: 296 AANIEPVVLD 305
            A IE  VLD
Sbjct: 300 QAPIEYQVLD 309


>gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
 gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
          Length = 875

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/529 (40%), Positives = 322/529 (60%), Gaps = 18/529 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S  K++ E+E   K   + K   + L   GI ++G + D++L +Y+L+   ++ D+A++A
Sbjct: 354 SRFKRWLEDEQCKKSVFDAKRAIVALKWNGIELKGVDFDLLLAAYLLNPTDANGDVAAVA 413

Query: 510 QKWLSYTR----KEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            K   YT     +E+  K  K +IP   +    + EH +  +  I  L      +L   +
Sbjct: 414 -KTKQYTDVQSDEEVYGKGAKQAIPPTNV----LAEHLVRKAKAIASLKETYIQELKRNE 468

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              +   L+ P+  +++QME  G+++D D L+Q+  E +  L  +E+ IY+L+G  FN++
Sbjct: 469 QFELLVHLELPLTFILAQMEFYGVKVDVDRLEQMGKEFTAQLEQIEQRIYELAGTTFNIN 528

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL+ P   KTKTG + T+A  LE++    + II+ IL +RQL K++STY
Sbjct: 529 SPKQLGTILFEKLQLPIVKKTKTG-YSTSADVLEKL-APYHEIIEQILHYRQLGKLQSTY 586

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            + L   + K T +VHT +  A T TGRL+S EPNLQNIPI+ + G+KIR+AF+      
Sbjct: 587 VEGLMKVVRKDTGKVHTIFQQALTQTGRLSSTEPNLQNIPIRIEEGRKIRQAFVPSSDDW 646

Query: 745 LI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           +I +ADYSQIELR+LAHIA    L   F + LDIH   A +IF V  ++V+  MRR AK 
Sbjct: 647 VIFAADYSQIELRVLAHIANDENLIAAFHHDLDIHTKTAMDIFHVKEDEVTAHMRRQAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EAA++I+RYF  +PG+  Y+E+     +Q GYV T+ 
Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAAEFIERYFRSYPGVKRYMEEVVQDAKQKGYVTTLL 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI +   L + +L T++LLQ
Sbjct: 767 HRRRYLPDITSGNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLANRLHEERLQTRLLLQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+ E P+EEI    +I+   ME A    ++LRVPLKV+      W
Sbjct: 827 VHDELILEAPKEEIELLKKIVPDVMENA----VSLRVPLKVDYHFGPTW 871



 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 122/291 (41%), Positives = 175/291 (60%), Gaps = 9/291 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  YRAF+A PLL     G+  NAI GF  ML KL++  +     +H  V 
Sbjct: 3   NKLVLIDGNSIAYRAFFALPLLHND-KGIHTNAIYGFTMMLMKLIEEEK----PTHILVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 58  FDAGKTTFRHEVYTEYKGGRQKTPPELSEQFPFLRELLDAYNIRTYELENYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              AEKEGF V IIS D+DL QL S    ++ T K     E+   +HV++K+G+ P ++V
Sbjct: 118 ATKAEKEGFDVVIISGDRDLTQLASERIHVHVTKKGITDMERYTPKHVLEKYGLTPAQIV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPG+PG+G KTA  LL+EYG +E++L +   I  KK +EN+  Y E A
Sbjct: 178 DLKGLMGDASDNIPGVPGVGEKTALKLLKEYGTVEHVLASLEHISGKKLKENLQTYHEQA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            LS++L  +R DVP+T+ L+ L     +  R+ +  + L FT L++++  +
Sbjct: 238 LLSKQLATIRRDVPLTLSLDELAWHSYDAERVAALFQELGFTSLMDKIGQS 288


>gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
 gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
          Length = 903

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/513 (40%), Positives = 317/513 (61%), Gaps = 18/513 (3%)

Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-----I 520
           ++ K   + L+R G+   G   D ML SYVLD  ++  D AS+A ++  YT+ E      
Sbjct: 398 YDAKKTMVTLNRLGLPCEGILFDFMLASYVLDPSQTIDDFASVASRY-DYTQVEADELVF 456

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K  K ++P     +++V +H    +  I +L   +   L   + L + + L+ P+  V+
Sbjct: 457 GKGAKYNVP----DETKVADHLARKAVAIAKLEQTVNESLEKNEQLELVDNLELPLTFVL 512

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++ME+ G+++D + L+++ +E++  L ++E +I++L+G  FN++SPKQLG ILF  L  P
Sbjct: 513 AKMEMEGVRVDTERLEEMKSEMAVRLQTIESSIHELAGTTFNINSPKQLGVILFETLGLP 572

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KTKTG + T A  LE +  G +PII  IL +RQL K++STY + L    +K+T +VH
Sbjct: 573 PVKKTKTG-YSTAADVLESL-SGKHPIIDEILLYRQLGKLQSTYVEGLLKVTDKKTSKVH 630

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T ++   T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LA
Sbjct: 631 TRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSHPGWKMFSADYSQVELRVLA 690

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           HI++   L   F N  DIH   A ++F V+  +V   MRR AK +NF I+YGIS + L+ 
Sbjct: 691 HISQDENLVYAFRNDYDIHTKTAMDVFHVSEAEVDSLMRRQAKAVNFGIVYGISDYGLSQ 750

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A D+I RYF  +P +  Y+E+     ++ GYVETI  RR +  EI S   ++
Sbjct: 751 NLGITRKAAKDFIDRYFASYPDVKVYMEEIVRSAKEKGYVETILHRRRYIPEITSRNFNV 810

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER A+N PIQGSAADI ++AM+ + + LE  ++  K+LLQ+HDEL+FE PE EI  
Sbjct: 811 RSFAERTAMNTPIQGSAADIIKQAMLLMDERLESEQMEAKLLLQVHDELIFEAPEAEIAK 870

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++I+   ME A    + L VPLKV+    ++W
Sbjct: 871 LAEIVPDVMENA----VALSVPLKVDSAHGDSW 899



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 170/307 (55%), Gaps = 11/307 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +++  +     +H  V 
Sbjct: 28  NKLILIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLINVIEKEK----PTHALVA 82

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ +  YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 83  FDAGKTTFRHKTFKAYKGGRQKTPSELSEQFPFIRELLDAYSIARYELPDYEADDIIGTL 142

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              AEKE F V +I+ D+DL QL S    +Y T K     EK   E + +K+ + P +++
Sbjct: 143 AREAEKEAFEVIVITGDRDLTQLASSHITVYITKKGITDMEKNTPESLQEKYQLTPAQII 202

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL +YG  +E++L +AS I  KK +E ++E  E 
Sbjct: 203 DMKGLMGDSSDNIPGIPGVGEKTALKLLHQYGGTVESVLEHASEISGKKLQEKVMENKEL 262

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  + T+ P+ + +        +  ++I  LK + FT L+  ++   D +   I
Sbjct: 263 ALLSKELATINTEAPVEVKIADTAYSGYDTEKVIPLLKEMNFTSLLKNISAE-DPEEEKI 321

Query: 300 EPVVLDI 306
           E   +D+
Sbjct: 322 ELQGIDV 328


>gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
 gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
          Length = 878

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/492 (41%), Positives = 303/492 (61%), Gaps = 19/492 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L +Y+LD   + +    +A ++L     E  K +K     ++       + +     
Sbjct: 399 DVSLAAYLLDPLENGYPPQKLAARYLDRILPEEPKKKKGEAVCNR-------DFSCAAVR 451

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +  L+ LL  KL    L H+YE L+ P+   +++ME TG+ +D   L  +  E  + + 
Sbjct: 452 TLYDLYPLLDEKLKEASLDHLYEDLELPLAYTLARMERTGVAVDLQALDAMKTEFRERIG 511

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           +LE+ IY L+GE+FNL+SPKQLG ILF KL  P+  KTKTG + T A+ LE++    + +
Sbjct: 512 ALEQEIYSLAGEEFNLNSPKQLGQILFDKLGLPALKKTKTG-YSTDAKVLEEL-APHHEV 569

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           +  IL++R L KI +TY + L   +N++T R+HT ++   T TGRL+S EPNLQNIPI+ 
Sbjct: 570 VAKILKYRTLIKILTTYLEGLSKLVNEQTGRIHTHFNQTVTATGRLSSTEPNLQNIPIRL 629

Query: 728 DLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           + G+++RRAF+  P KK   L+SADYSQIELRILAH++K   L   F    DIHR  AAE
Sbjct: 630 EEGRRVRRAFV--PGKKGNLLLSADYSQIELRILAHVSKDPVLIDSFRKEEDIHRRTAAE 687

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV  E V+P++R  AK +NF I+YGIS + L+ QL+IPR EA +YI RYF R PG+ +
Sbjct: 688 VFGVLPEDVTPELRDRAKAVNFGIVYGISDYGLSQQLKIPRQEAKEYISRYFERLPGVRD 747

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +I       ++NGYV T+  RR +  +IN+   + R+  ER A+N PIQG+AADI + AM
Sbjct: 748 FIHNVVEDAKKNGYVTTLLNRRRYLPDINAKNFNQRSFAERTAMNTPIQGTAADIIKLAM 807

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           + V ++L       +M+LQ+HD+LVFEV EE +   ++++   ME A    + L VPL V
Sbjct: 808 LRVEEALAGMD-DVQMVLQVHDDLVFEVKEESLINVARLVKKQMESA----LELAVPLTV 862

Query: 965 NIKVSNNWQEEN 976
           ++K   NW E N
Sbjct: 863 DVKAGLNWAEMN 874



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 162/292 (55%), Gaps = 10/292 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+++    ++DGSS +YRAF+A PLL  +  GL  NA+ GF +ML K+L   + +    +
Sbjct: 1   MKEKGTFLIIDGSSLLYRAFFALPLLQTRQ-GLYTNAVYGFTSMLLKVLDEEKPD----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A TFR++ Y +YK  R K P  L  Q+  VR    A  IP +E +G+EADD+
Sbjct: 56  AVVAFDKAAPTFRHKEYSEYKGKRDKTPGELNEQISHVREVLAALHIPIVETEGYEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPP 176
           I T    A        I+S D D+ QLV  P   +Y      + E+ + + + +++G+  
Sbjct: 116 IGTMAKNARDIDIRPLIVSGDADIFQLVDIPAEVIYTKRGITQVERYNEDKLQERYGLTA 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+ +  + L GD  DNIPG+PG+G KTA  LL+++G LE I  N   +K  K REN+ +Y
Sbjct: 176 EQYIDFKGLKGDPSDNIPGVPGVGEKTAIKLLKQFGTLEKIYENMDELK-GKLRENLTQY 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            E A LS++L  +  DVP+   ++    ++ +   L    + LEF  L+ ++
Sbjct: 235 KEQAFLSKRLATIVKDVPMEESIKDFARQEPDSDELRRLFEQLEFKSLLEKL 286


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/612 (35%), Positives = 352/612 (57%), Gaps = 28/612 (4%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           YT + ++++I   V++L      +  +     +A  ++  A+A+S+     D  F     
Sbjct: 313 YT-MADSQNIDSIVRRLGEAKELALAVSGTPEEAMDARLTALALSS--AAGDACFV---- 365

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
              L+      S G+   T E  S L     ++   K  HN KY   +L   G  ++G +
Sbjct: 366 ---LAEFIGSASEGQMFAT-EGHSGLAALLGDKKMSKTAHNAKYLMNLLLSAGQEVKGLD 421

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHA 542
            D M+ +++L  G  +  I  +  +       +I     ++ K +I     ++ Q+ E A
Sbjct: 422 FDTMIAAHLL--GEKNLAIKDLVFEHFGIEIADIENILTRNGKKTI----FNEVQLSEAA 475

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
              ++   +L  +   +L   +L+ ++ R++ P++ ++  ME  GI +D DLLK ++ + 
Sbjct: 476 QLAADYTFRLKGIFAAQLAETRLMDLFARVEMPLLPILLGMERIGIMLDTDLLKAMAEKT 535

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
            + +  LEE+IY  +G  FN+ SP+QLG ILF +LK P   KTKTG + T A+ LE++  
Sbjct: 536 GRQIFKLEEDIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YSTGAEVLEELQ- 593

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           G + I+  ILE+R L K+KSTY D+LP  +N  T+R+HT ++   T TGRL+S EPNLQN
Sbjct: 594 GKHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQN 653

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++ ++G++IRRAFI+PP   L++ DYSQI+LR+LAH+++   L + F++  DIH   A
Sbjct: 654 IPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATA 713

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           A +  V+  KV+ + RR AKT+NF +IYG+S + L     +   EA  +IK YF ++P +
Sbjct: 714 ARLLNVSPSKVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFEKYPRV 773

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y  + K   R  GYVET+ GRR +  EINSP   +R   ER AIN P+QG++ADI + 
Sbjct: 774 AVYFAEIKQQARTQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKL 833

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ + + +++ KL +++LLQ+HDEL+FEVP  E+   S +++ +M  A    +   +PL
Sbjct: 834 AMVRLDEKIKEEKLKSRLLLQVHDELIFEVPTAELGRMSDLLIETMSGA----VAFEIPL 889

Query: 963 KVNIKVSNNWQE 974
           KV +K   NW +
Sbjct: 890 KVELKSGANWGD 901



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 159/296 (53%), Gaps = 26/296 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L DG++ ++RA++  P L+ +  G  V A  GF ++L K+L + + +     +A+ FD
Sbjct: 6   IVLFDGTNLVHRAYHVLPPLAIRKTGEVVGAAFGFASILIKVLTDLKPDC----YAISFD 61

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++  YKA RP +P+ L+ QL  VR    AF +P  E  GFEADD++ T   
Sbjct: 62  RKGPTFRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLAT 121

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDIEHVIKKW 172
            A   G  V I S D D MQLV P              +T LYD           V  K+
Sbjct: 122 RAAAAGMEVIIASGDADSMQLVGPDIRILYPGPAGSFASTSLYDEAA--------VRAKY 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ PE +   +AL GD  DNIPG+PGIG KTA  L++EYG +E+I  N  +I     ++ 
Sbjct: 174 GLGPEHIADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKK 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + + AE AR S+ L  +  D+P+   +E    E  N  +++   + LEF +LI+R+
Sbjct: 234 LADNAEVARDSKILTTIVCDLPLDFSIEECRAEHYNRQKVVDLFRELEFFRLIDRL 289


>gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
          Length = 875

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/531 (39%), Positives = 324/531 (61%), Gaps = 22/531 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+++ E+   +K   + K  K  L R GI + G + D++L SY+ + G S  D+A++A++
Sbjct: 356 LRRWLEDSSKIKYMSDSKASKAALKRAGIQLAGVDFDLVLASYINNPGLSGDDVATLARE 415

Query: 512 WLSYTRKE----ILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
              Y  +       K  K ++P IDK++     +H    +  +  L   L   L   +  
Sbjct: 416 LGYYDVQADETVYGKGAKRAVPEIDKLA-----QHVSRKAYAVWSLQPKLEALLKENEQF 470

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +Y+ L+ P+  ++ +ME  GI +++  L+++  E++  L+ LE+ IY  +GE FN++SP
Sbjct: 471 DLYKELELPLAAILGEMESEGITVNRATLEKMGQELNDKLVVLEQEIYAEAGETFNINSP 530

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KL  P   KTKTG + T A  LE++   ++ II+ IL +RQL K++STY +
Sbjct: 531 KQLGVILFDKLGLPVIKKTKTG-YSTAADVLEKLKS-EHAIIEYILLYRQLGKLQSTYIE 588

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L   I+++  +VHT +  A T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+K+  
Sbjct: 589 GLLKEIHEKDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSKEDW 646

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L SADYSQIELR+LAH+++   L + F   +D+H   A ++F V+ E+V   MRR AK 
Sbjct: 647 ILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EAA +I++YF  FPG+ +Y++      + NGYV TI 
Sbjct: 707 VNFGIVYGISDYGLSQNLDITRKEAATFIEKYFASFPGVKQYMDDIVQNAKFNGYVTTIL 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI +   L+   +  K+LLQ
Sbjct: 767 NRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMDARLKKENMQAKLLLQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDEL+FE P+EEI    +I+   ME A    I L VPLKV+    + W E
Sbjct: 827 VHDELIFEAPKEEIAMLEKIVPEVMENA----IELSVPLKVDFNHGSTWYE 873



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/291 (37%), Positives = 159/291 (54%), Gaps = 10/291 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML ++L+  +   I   
Sbjct: 1   MTKEK-LLLLDGNSLAYRAFFALPLLTN-DSGIHTNAVYGFTTMLQRILEEEQPTKIL-- 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q P +R    A+GI   E   +EADDI
Sbjct: 57  --VAFDAGKTTFRHETFTEYKGGRQKTPPELSEQFPYIRKLIDAYGIKQYEQDLYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A  +   V I+S D+DL QL +    +Y T K     E+     + +K+G+ P
Sbjct: 115 IGTLAKEASSQDMDVIIVSGDRDLTQLATEQVTVYITKKGITEIERNTPAFIAEKYGLTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  LL+E+G++E +      +K  K +E ++  
Sbjct: 175 LQIIDMKGLMGDSSDNIPGVPGVGEKTAVKLLKEHGSVEALYEAMDTLKASKMKEKLVAN 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            E A +S+KL  + TD PITI L  L     N   L++  + L F  L+ +
Sbjct: 235 EEQAIMSKKLATIYTDAPITISLTDLAYNGPNEEELMNVWRELGFKSLLEK 285


>gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
 gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
          Length = 878

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/505 (40%), Positives = 307/505 (60%), Gaps = 27/505 (5%)

Query: 476 LHRYG-ISMRG---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
           L RY    +RG   F DI L +Y+L+  RS + +  ++QK+L     E     +S     
Sbjct: 393 LKRYDQAGVRGQNDFFDIELAAYLLEPERSKYALPELSQKYLQEMAPESFADERS----- 447

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
                     A+  +  I +L+ LL  KL  E+L H+ + ++ P+++V++ ME  G+ ++
Sbjct: 448 ---------RAVWEAKTISRLYPLLGAKLEEEELTHLMKTVELPLVEVLAAMEQNGVYVN 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +  L + + E++  L ++E++IY+++G  FNL+SPKQLG +LF +L  P   KTKTG + 
Sbjct: 499 RAHLAEKTEEVADRLQTIEQSIYEMAGHTFNLNSPKQLGTVLFEELDLPVRKKTKTG-YS 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A+ LE +   ++PI++ IL +R  SK+KSTY D +   I   T RVHT ++   T TG
Sbjct: 558 TNAEVLESLRL-EHPIVEQILAYRLWSKLKSTYLDGITGLIRTDTGRVHTSFNQTVTATG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQ 769
           RL+S +PNLQNIP++T+ G+ IR A   P      L+SADYSQIELR+LAH++       
Sbjct: 617 RLSSSDPNLQNIPVRTEEGRMIR-ALFEPGEGYDYLLSADYSQIELRLLAHMSGDENFID 675

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           VF+   DIH   AAE+FG+ +E+V+P++RRHAK +NF I+YGIS F LA  L I R EA 
Sbjct: 676 VFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAVNFGIVYGISDFGLARNLHISRKEAG 735

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYI RYF R+PG+  +++K      + GYV T+FGRR     I S   + R + ER A+N
Sbjct: 736 DYISRYFERYPGVRAFMDKVVAEAHETGYVTTMFGRRRELPAIKSRNFNQRMLAERMAMN 795

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AAD+ + AMI+ +  L++  + +++LLQ+HDELV EV E E+     I+  SME
Sbjct: 796 TPIQGTAADVIKLAMIAAYHRLKEAGVKSRILLQVHDELVLEVVESELDVVQAILRESME 855

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
                 + L VPL ++I    NW E
Sbjct: 856 HV----VALSVPLIIDIHWGRNWAE 876



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 151/257 (58%), Gaps = 11/257 (4%)

Query: 4   ENHLFLV-DGSSFIYRAFYATPL-LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           E   FLV DGSS I+RAFYA P  LS  H G P  AI GF NML KL+   + + +A   
Sbjct: 8   EQKRFLVLDGSSLIFRAFYALPPDLSDSH-GQPTGAIFGFSNMLTKLIAEQQPDLMA--- 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR E Y DYK  R K PE LL Q PL+R      GIP +E   +EADDII
Sbjct: 64  -LAFDKSRHTFRTERYADYKGTRDKTPEELLSQFPLLREFAANMGIPFLEKDNYEADDII 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T    A  EG+ V +++ D+D +QLV P   +  T K     +  D     +++G  P 
Sbjct: 123 GTLATQAAAEGYDVRVVTGDRDALQLVRPNLRVLLTKKGISELKDYDTAAFEEEYGFEPL 182

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ L+ L GD+ DNIPGIPG+G KTA+ LL  YG++EN+L +   +  KK +E ++EYA
Sbjct: 183 KLIDLKGLMGDTSDNIPGIPGVGPKTASKLLLAYGSVENVLAHVEDVSGKKLKERLMEYA 242

Query: 238 ETARLSRKLVMLRTDVP 254
           + ARLS++L  +   VP
Sbjct: 243 DQARLSKELATIELHVP 259


>gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026]
          Length = 886

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/528 (40%), Positives = 332/528 (62%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L K  E++   K   +IK   + LHR  +   G + D++L SY++++  +S+D+  +A  
Sbjct: 367 LHKMLEDKTIKKNVFDIKRTYVGLHRLDLKAEGLDYDMLLASYLVNNENNSNDLGEVAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +K ++P    +D++  EH      VI +L   L  KL   +   
Sbjct: 427 YDDYSVKTDLEVYGKGKKQAVP----NDNEFFEHLAAKVAVIEKLKTQLLEKLKDHEQDD 482

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE ++ P+  V+++MEITGI+++  +L Q+  + +  L  LE  IY  +GE+FNL+SPK
Sbjct: 483 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 542

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + LEQ+    +PI+  IL++RQ++KI++TY   
Sbjct: 543 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745
           L + I +   R+HT Y    T TGRL+S++PNLQNIP KT+ G++IR+AF+ P TK   +
Sbjct: 601 LLDCI-QPDGRIHTRYLQTLTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFV-PSTKDGYI 658

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804
            S DYSQ+ELR+LAH++    + + F++  DIH   A +IF ++  ++V+P MRRHAK +
Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I+ YF ++P I  Y+++     R+NGY ETI  
Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMH 778

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I+S   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM+LQ+
Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 839 HDELIFDVPKDELNTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 882



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 165/295 (55%), Gaps = 17/295 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK------HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L R+       DGL  NAI  F NML  ++    K++  ++
Sbjct: 6   LLLIDGNSVAFRAFYA---LYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR E+Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176
           I T + + E  G+ V I++ D+DL QL S  T +  T       E    +H+ +  G+ P
Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPDHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++E +  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSIEELYEHVDEMKKSKLKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + A L++KL  +  + P+ + L    L++ N   L +  + L F K +  + +T
Sbjct: 239 KDKAFLAKKLATIDRNSPVEVTLADTKLQEPNIEDLRNLYERLGFKKFLAELGST 293


>gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
 gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
          Length = 878

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/501 (40%), Positives = 316/501 (63%), Gaps = 17/501 (3%)

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDK 532
           R+G+ +RG + D+ML +Y+++   +  D+ASI Q++    +S   +   K  K  +P D 
Sbjct: 385 RFGVELRGVDFDLMLGAYIVNPSLTYTDMASIVQEYGHNDVSTNEQIYGKGAKKKVPEDA 444

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I    + EH    +  I ++  L+  KL   +   +Y++L+ P+  V+ QME  G+ +++
Sbjct: 445 I----LHEHIARKARTIWKVRPLIMAKLEDNEQFDLYDKLELPLATVLGQMESLGVMVNR 500

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L ++  E++  L  +E +I+ L+G++FN++SPKQLG ILF KL  P+  KTKTG + T
Sbjct: 501 DQLVEMGKELAHKLEKIESDIHGLAGQEFNINSPKQLGVILFEKLGLPALKKTKTG-YST 559

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  LE++  G + II +IL +RQL K+ STY + L   I++   ++HT +  A T TGR
Sbjct: 560 AADVLEKLE-GQHEIISHILMYRQLGKLLSTYIEGLLKEIHE-DGKIHTRFQQALTTTGR 617

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S+ PNLQNIP++ + G+KIR+AF+ S P   +++ADYSQIELR+LA +++   L Q F
Sbjct: 618 LSSINPNLQNIPVRLEEGRKIRKAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAF 677

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++  DIH   A+++F V  E+V+  MRR AK +NF I+YGIS + L+  L IPR EAA +
Sbjct: 678 KDDRDIHTTTASDVFHVTEEEVTSDMRRAAKAVNFGIVYGISDYGLSQNLNIPRKEAAAF 737

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+RYF  FPG+  Y+       +++G+V T+  RR +  +I S   ++R+  ER A+N P
Sbjct: 738 IERYFASFPGVKSYMTNIVADAKRDGFVTTLMNRRRYLPDITSSNFNLRSFAERTAMNTP 797

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI ++AMI +  ++E   L  +MLLQ+HDEL+FE P EE+    +++   ME A
Sbjct: 798 IQGSAADIIKKAMIDMDAAIEREGLQARMLLQVHDELIFEAPPEELDHLMKLVPEVMENA 857

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               + L VPLKV+I   + W
Sbjct: 858 ----VKLSVPLKVDIAHGSTW 874



 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 168/289 (58%), Gaps = 10/289 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG+S  YRAF+A PLL+ +H G+  NA+ GF  ML K+L     E   +H  V FD
Sbjct: 11  ILLLDGNSLAYRAFFALPLLTNEH-GIHTNAVYGFTMMLQKILD----EEQPTHMIVAFD 65

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + +YK  R K P  L  Q P +R    A+GI   E++ +EADDII T + 
Sbjct: 66  AGKTTFRHKTFSEYKGGRQKTPPELSEQFPYLRKLIDAYGIKRYELENYEADDIIGTLSL 125

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE+EG  V +IS DKDL QL SPTT +Y T K     EK  +EH+ +K+G+ P +++ +
Sbjct: 126 EAEREGDEVVVISGDKDLTQLASPTTTVYITRKGITDIEKYTVEHIKEKYGLTPLQIIDM 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DNIPG+PG+G KTA  LL  +G++E +   A   ++ K +E ++   + A +
Sbjct: 186 KGLMGDASDNIPGVPGVGEKTALKLLAAHGSVEGVY-EAIEQQKGKMKEKLIANEDLAYI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           S++L  +    PI I ++ L     +   L+   K L F  L+ ++  T
Sbjct: 245 SKQLATIERQAPIEIQIDELSYSGPDQDELVKVWKELAFKSLLEKMEYT 293


>gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 842

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/510 (40%), Positives = 310/510 (60%), Gaps = 34/510 (6%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           LKI H+I+  + +       +   +D+M+MSY LD+G+  H I +I    LS   +    
Sbjct: 364 LKIVHDIRKIREIFPTIERVLDSIDDLMIMSYSLDTGKHDHSIPNIIAHNLSKNVETF-- 421

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                                 ++ +++ +   L  +L  EKL  +YER D+P++ V+  
Sbjct: 422 ----------------------SAKILIAIHEKLTQRLFQEKLFTIYERFDRPLMKVIFD 459

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI ++   L+++S +  + +  LE +I++L+GEKFN++SPKQL D+LF K++    
Sbjct: 460 MEQNGILLNIQKLQELSDKFEQLIAVLENDIHNLAGEKFNIASPKQLSDVLFNKMELSKK 519

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            K+K+G + T  + LE +      I   IL WR LSK+K TY D+L   ++    R+HT 
Sbjct: 520 KKSKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPIDGRIHTS 579

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           +S   T TGRL+S  PNLQNIPI+++ G  IR+AFI+P   K+ISADYSQIEL++LAH+A
Sbjct: 580 FSTTVTATGRLSSSNPNLQNIPIRSEEGNFIRQAFIAPKGCKIISADYSQIELKLLAHVA 639

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
            +T   + F N  DIH + A ++FGV  +++  Q+RR AKTINF IIYGISPF LA +L 
Sbjct: 640 NVTAFKEAFANRQDIHDITARQVFGV--QEIDEQLRRKAKTINFGIIYGISPFGLAKRLG 697

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I   EAA+YI  YF  +P I  Y+EK  +  R +GYVET+FGRR    +IN+    +R  
Sbjct: 698 ITFQEAAEYINYYFSCYPEIKVYMEKAVSIARNHGYVETLFGRRCFVRDINNKIPYLRQF 757

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ERAAINAP+QG+AADI +RAMI +   L+    + K++LQ+HDEL+ EV E  +   ++
Sbjct: 758 AERAAINAPLQGTAADIIKRAMIRLFDQLK----SGKIILQVHDELLVEVEESRVQETAK 813

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++   ME A    + + +PL+V IK+S+NW
Sbjct: 814 LMKDIMENA----VEISIPLEVEIKISDNW 839



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/291 (39%), Positives = 174/291 (59%), Gaps = 8/291 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE    ++DG  F++RA+Y    L+    G+PV A+ GF NM+ K + +S   +IA    
Sbjct: 2   KEKTFTIIDGYGFLFRAYYVLHHLTTTA-GIPVGAVYGFLNMVLKYISHSDYLTIA---- 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D     FR+ +Y +YKANR   PE L+PQ  ++R A +AF     EI+G+EADDIIA
Sbjct: 57  --LDSGKKNFRHSLYSEYKANRVTPPEDLIPQFTILREAVEAFNFSYEEIEGYEADDIIA 114

Query: 123 TYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T     A  E F V ++S+DKDL QL++    ++D +K   +D + VI+K+G+   K++ 
Sbjct: 115 TLAAKYANHEDFKVVVVSSDKDLFQLLNYNILIFDPIKNIYVDEKQVIEKFGVNSNKLLD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L +LTGD+ DNIPG+PGIG KTAA LL ++ +L+NI+ N + I+Q + R  + E+ E A 
Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDKFDSLDNIIENINNIEQTRVRNILTEHKEKAL 234

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +SR+L+ L   V +   +    +   N  +L+SFLK  EF  LI +V   +
Sbjct: 235 ISRELLSLCKKVDLQHDIVKYEVHPPNMEKLLSFLKKYEFNSLIGKVEKLF 285


>gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
 gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
          Length = 874

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/526 (40%), Positives = 326/526 (61%), Gaps = 16/526 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            KK+  +E   K   N K   + L    IS+RG   DI + SY++D   SSH++A I+ +
Sbjct: 355 FKKWANDEKNEKWIFNAKQAIVSLGWNDISLRGVTFDIQIASYLIDPSASSHEMADISNR 414

Query: 512 WLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             SYT K       K +K  +P ++I    V +H +  +  I  L   L  +L   +   
Sbjct: 415 KRSYTVKSDEAVYGKGKKRQVPEEEI----VAQHLVRKAAAINVLKEELESELKENEQFE 470

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ L+ P+  V+  ME+ GI I+++ L Q+   +S  L ++E+ I++L+G +FN++SPK
Sbjct: 471 LFKDLEMPLSIVLGHMEMNGISINKEELLQMGETLSDKLSTMEKEIHELAGVEFNINSPK 530

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG+ILF KL+ P   KTKTG + T+A  LEQ+    + I++ IL +RQL K+ STY + 
Sbjct: 531 QLGEILFDKLQLPVVKKTKTG-YSTSADVLEQLR-DKHEIVEKILLYRQLGKLNSTYIEG 588

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI- 746
           L   I++++ ++HT ++ A T TGRL+S EPNLQNIPI+ + G+KIRRAF+      +I 
Sbjct: 589 LLKVIHQKSGKIHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRRAFVPERENAVIF 648

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQIELR+LAHI+    L   F+ ++D+H   A ++F V+ ++V+  MRR AK +NF
Sbjct: 649 AADYSQIELRVLAHISNDENLTNAFKENMDVHTKTAMDVFHVSADEVTSLMRRTAKAVNF 708

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS + L+  L I R EA  +I RYF  +PG+ EY+E      R NGYV T+  RR
Sbjct: 709 GIVYGISDYGLSQNLGITRKEAKKFIDRYFDSYPGVKEYMESIVEEARVNGYVTTMLHRR 768

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  EI S   ++R+  ER A+N PIQGSAADI ++AM+ + + +++  L + +LLQ+HD
Sbjct: 769 RYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMVKMEEEMKEKGLKSTLLLQVHD 828

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FEV +EEI T  +++   ME A    +NL VPLKV+    + W
Sbjct: 829 ELIFEVVQEEIETMKELVPKVMENA----VNLAVPLKVDFSFGDTW 870



 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 113/288 (39%), Positives = 169/288 (58%), Gaps = 9/288 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDG+S  YRAF+A PLL+ +  G+  NA+ GF  ML K+L+  +     +H  V 
Sbjct: 2   NKLVLVDGNSIAYRAFFALPLLNNEK-GVFTNAVYGFTTMLLKILEEEK----PTHMLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  QLP++R   +AF I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHNTYKEYKGKRQKTPGELAEQLPVMRDLLKAFNITYYEVENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A K  + V I+S DKDL+QLVS    +  T K     +  D++ + +K+GI PE+++
Sbjct: 117 STKASKSNWEVKIVSGDKDLLQLVSENVKVALTRKGITNVDTYDLQMIDEKYGIKPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+PG+G KTA  LL+++G +E +  +   +  KK +E + E  + A
Sbjct: 177 DMKGLMGDASDNIPGVPGVGEKTALKLLKQFGTVEKLYESLEDVSGKKLKEKLAENKDNA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +S+KL  +  + P+TI  E   L D N   + +  K LEF  L+ R+
Sbjct: 237 FMSKKLATIELNSPVTIDFEDTKLTDPNNKEVTALFKELEFNSLLERI 284


>gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 921

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/516 (37%), Positives = 323/516 (62%), Gaps = 11/516 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
           K+G NIKYD +VL  +G  +   + D ML SYV+      H++  +A+  L+Y   T  +
Sbjct: 410 KVGQNIKYDLIVLENHGFILNNIQFDTMLASYVIQPEGRRHNMDVLAKDLLNYDTITYDD 469

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           ++ + K    +  I   QV E+A E++++  +L+ + R K+    +  +   ++ P+I V
Sbjct: 470 LVGTGKKKKELTDIDPEQVAEYAAEDADITFRLYQIFRKKIKESGVEPILRNIEMPLISV 529

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK 
Sbjct: 530 LAKMEKTGIALDVPYFEELARDFDREIRHLESEIHRQAGRSFNIASTKELQKILFDDLKL 589

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
            +  KT+TG + T  + LE++  G++PI++ +L++R+ +K+KSTY D+LP  +N RT R+
Sbjct: 590 KTVKKTQTG-YSTDHEVLEEL-LGEHPIVEKLLDYRKYTKLKSTYVDALPKMVNPRTGRI 647

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRIL 758
           HT Y+     TGRL+S +PNLQNIPI+   G+ +R+ F +     +++S DYSQIELRI+
Sbjct: 648 HTSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIM 707

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AHI+K   + + + + LDIH   AA ++GV  ++V+P+MR  AK +NFS+IYG++P+ L+
Sbjct: 708 AHISKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLS 767

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             LRIPR EA  +I+RY  ++PG+  Y++    F  +NGYV+T+ GRR    +INS   S
Sbjct: 768 RNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPIVDINSTHKS 827

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            +   +R AIN+P+QG++AD+ + AMI++H+ +E     ++MLLQ+HDELVFEV ++E  
Sbjct: 828 AKEAAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRMLLQVHDELVFEVHKKE-- 885

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +    SM+K     + L +P+ V  K   NW E
Sbjct: 886 --KEEFKISMKKHMENAMPLDLPILVEGKFGVNWDE 919



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 151/296 (51%), Gaps = 19/296 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L ++DG +F++RA+YA     L+    G P  A  GF  ML+KLLQ+       +H A+ 
Sbjct: 4   LLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLLQDY----TPTHVAMT 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT- 123
           FD      R + + DYKANR  +PE L PQ+  V    +  G   ++++G EADDII T 
Sbjct: 60  FDPGGPLERGKTFEDYKANRKPMPEDLRPQIKEVMETLEKIGFKVLKMEGHEADDIIGTL 119

Query: 124 ---YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIP 175
              Y  IA++    + I S DKDL QL+          K+      +ID   V ++ GI 
Sbjct: 120 CETYRTIAKE----ILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGID 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            +++     + GD+ DNIPG+ GIG K A+ LLQEY  L+ I  N ++IK    +  + E
Sbjct: 176 VKQIPDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKTLDGIYKNLNKIKNPSIQTKLSE 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
             E A LS++L  +R D+ + I  + +   D      I + K+  +  L   +A +
Sbjct: 236 QKENAYLSKQLATIRRDLKLGITEKDIETPDYKSDHAIVYFKSQGYNVLSKDLAKS 291


>gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 921

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/516 (37%), Positives = 323/516 (62%), Gaps = 11/516 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
           K+G NIKYD +VL  +G  +   + D ML SYV+      H++  +A+  L+Y   T  +
Sbjct: 410 KVGQNIKYDLIVLENHGFILNNIQFDTMLASYVIQPEGRRHNMDVLAKDLLNYDTITYDD 469

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           ++ + K    +  I   QV E+A E++++  +L+ + R K+    +  +   ++ P+I V
Sbjct: 470 LVGTGKKKKELTDIDPEQVAEYAAEDADITFRLYQIFRKKIKESGVEPILRNIEMPLISV 529

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK 
Sbjct: 530 LAKMEKTGIALDVPYFEELARDFDREIRHLESEIHKQAGRSFNIASTKELQKILFDDLKL 589

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
            +  KT+TG + T  + LE++  G++PI++ +L++R+ +K+KSTY D+LP  +N RT R+
Sbjct: 590 KTVKKTQTG-YSTDHEVLEEL-LGEHPIVEKLLDYRKYTKLKSTYVDALPKMVNPRTGRI 647

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRIL 758
           HT Y+     TGRL+S +PNLQNIPI+   G+ +R+ F +     +++S DYSQIELRI+
Sbjct: 648 HTSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIM 707

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AHI+K   + + + + LDIH   AA ++GV  ++V+P+MR  AK +NFS+IYG++P+ L+
Sbjct: 708 AHISKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLS 767

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             LRIPR EA  +I+RY  ++PG+  Y++    F  +NGYV+T+ GRR    +INS   S
Sbjct: 768 RNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRLIVDINSTHKS 827

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            +   +R AIN+P+QG++AD+ + AMI++H+ +E     ++MLLQ+HDELVFEV ++E  
Sbjct: 828 AKEAAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRMLLQVHDELVFEVHKKE-- 885

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +    SM+K     + L +P+ V  K   NW E
Sbjct: 886 --KEEFKISMKKHMENAMPLDLPILVEGKFGVNWDE 919



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 151/296 (51%), Gaps = 19/296 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L ++DG +F++RA+YA     L+    G P  A  GF  ML+KLLQ+       +H A+ 
Sbjct: 4   LLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLLQDY----TPTHVAMT 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT- 123
           FD      R + + DYKANR  +PE L PQ+  V    +  G   ++++G EADDII T 
Sbjct: 60  FDPGGPLERGKTFEDYKANRKPMPEDLRPQIKEVMETLEKIGFKVLKMEGHEADDIIGTL 119

Query: 124 ---YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIP 175
              Y  IA++    + I S DKDL QL+          K+      +ID   V ++ GI 
Sbjct: 120 CETYRTIAKE----ILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGID 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            +++     + GD+ DNIPG+ GIG K A+ LLQEY  L+ I  N ++IK    +  + E
Sbjct: 176 VKQIPDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKTLDGIYKNLNKIKNPSIQTKLSE 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
             E A LS++L  +R D+ + I  + +   D      I + K+  +  L   +A +
Sbjct: 236 QKENAYLSKQLATIRRDLKLGITEKDIETPDYKSDHAIVYFKSQGYNVLSKDLAKS 291


>gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 866

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/527 (38%), Positives = 321/527 (60%), Gaps = 29/527 (5%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508
           L ++K   E+    K  HN K+ +++L R+GI +RG   D ML++YV D      ++ + 
Sbjct: 365 LQWIKALLESAVIKKYLHNAKFIQVLLLRHGIELRGVAGDTMLLAYVDDPAFEGDELDAC 424

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            +K L      I ++  +++                  N I +L+  L  ++  E L  +
Sbjct: 425 LKKHLQLN---IAENNLAAL-----------------VNTIRELYFQLEGQIPAE-LREL 463

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
            + ++ PM +V+++ME  G+++++  L ++S E++  +   EE I++L+G  FN++SPKQ
Sbjct: 464 LQEVEMPMSEVLARMEFCGVKVERSTLARISEELASGIAGHEERIFELAGSSFNINSPKQ 523

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG +LF  L      K KTG + T A+ LE++   ++ II +IL +RQLSKIKSTYAD+L
Sbjct: 524 LGKVLFEDLGLRVIKKGKTG-YSTGAEVLEEL-YQEHEIIAHILNYRQLSKIKSTYADAL 581

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLIS 747
              I+  T RVHT +  A T TGRL+S+EPNLQNIPI+ + G++IR+AF++P P   +++
Sbjct: 582 QELIHPETGRVHTIFKQAQTATGRLSSVEPNLQNIPIRMEEGRRIRQAFVAPGPDWLIMA 641

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQI+LR LAHI+    L + F++ +DIH   A EIF V +E V  ++RR AK +NF 
Sbjct: 642 ADYSQIDLRSLAHISGDERLIETFKSGVDIHTRTAVEIFHVPVEWVDSELRRRAKAVNFG 701

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           IIYGIS F LA    + R EA  YI  Y + +PG+ +Y+E    F R++GYVET+  RR 
Sbjct: 702 IIYGISDFGLARDTGVSRKEARKYIDNYLNSYPGVKKYMEDIVEFGRRHGYVETLLKRRR 761

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  E+N+    ++    R A+N P+QG++ADI + AMI V + +   +L  ++LLQ+HDE
Sbjct: 762 YLPELNARNKMVQAFGRRMALNTPVQGTSADIIKLAMIKVDEEIRKRRLQARLLLQVHDE 821

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+ E+P  E+   S ++   ME AC    +L+VPL+V++K   NW E
Sbjct: 822 LLLELPRTELEEVSGLLRDCMENAC----SLKVPLEVSLKTGPNWYE 864



 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/285 (40%), Positives = 165/285 (57%), Gaps = 9/285 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +   L+DG+S +YRAFYA PLL     G+  N + GF  M  ++L     E   +H AV 
Sbjct: 3   DKFILIDGNSLLYRAFYALPLLHNSA-GVYTNGVYGFLTMFNRVL----AEIQPTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRNE+Y +YKANR   PE L  Q  L+R    A  I  +E+QG+EADDII T 
Sbjct: 58  FDKDRSTFRNELYSEYKANRSAPPEELGGQFQLLRDVLAALNIEYLEMQGYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  AE++G    I++ D D +QLVS    +  T K     E  D + V  KWG+ PEKMV
Sbjct: 118 SKKAEEQGLKTVILTGDGDALQLVSEQVEVLLTKKGISEMELYDPQGVKDKWGVEPEKMV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+PG+G KTA  L+QE+ +LEN+  N  ++K KK  E + +  E A
Sbjct: 178 EIKGLMGDASDNIPGVPGVGPKTAMKLVQEFTSLENLYENLPQVKGKKLVEKLEQNREQA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            LSR+L  +  D+ +   +E  ++ + + P L+   ++LEF   +
Sbjct: 238 FLSRQLATINRDMELDFSIEDYVMREPHYPELLELYRSLEFNNFL 282


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/502 (40%), Positives = 316/502 (62%), Gaps = 23/502 (4%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + DIA++A+  ++ +    E +  K  K S+P     
Sbjct: 386 GIDVRGVAFDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAVYGKGVKRSLP----D 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + EH +  +  I   W L +P    L   +   +  +L++P+  ++++ME TG+ +D
Sbjct: 442 EQTLAEHLVRKAAAI---WALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+ +G++FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYEHAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YS 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A  LE++    + I++NIL +RQL K++STY + L   +   T +VHT ++   T TG
Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQTLTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+  LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVRRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EEI    +++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A        VPLKV+      W
Sbjct: 857 AVSS-----VPLKVDYHYGPTW 873



 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 117/295 (39%), Positives = 173/295 (58%), Gaps = 11/295 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R   + + IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKTYRIPAYELYIYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V IIS D+DL QL S    + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKIISGDRDLTQLASRHVTV-DITKKGITDIEPYTPETVREKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   +K +K +E + +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKGEKVKEKLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + + A LS++L  +  D P+ + L+ L+ E  +  ++I+  K L F   + ++A 
Sbjct: 235 HRDLALLSKQLASICRDAPVELSLDALVYEGQDREKVIALFKELGFQSFLEKMAA 289


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/569 (38%), Positives = 339/569 (59%), Gaps = 24/569 (4%)

Query: 418 DDTSFKVETI-----FIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNI 469
           D+ +F VE +     + D+   +  +  G    +KE        K + E+E   K  ++ 
Sbjct: 315 DENAFYVELLEDNYHYADIIGFSVANDKGNFFFSKETALKSDVFKTWAEDETKKKTVYDA 374

Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSR 524
           K  ++ L  +G+ ++G + D+ + SY+++  ++  D+ASIA+   + +    E    K  
Sbjct: 375 KRSEVSLRHHGVHLKGADFDLYIASYLINPSQTIEDMASIAKNHGYNAIQSDEAFYGKGA 434

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K  IP +K    ++  H    +  ++ L   L  +L   +   ++  L+ P+  +++ ME
Sbjct: 435 KRRIPEEK----ELAGHLARKAAALMTLKEKLDSELKENQQSELFYDLEMPLSLILADME 490

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
            TGI++D + LK +  ++   L  +E+ I++L+GE FN++SPKQLG ILF KL  P+  K
Sbjct: 491 STGIKVDLERLKTMGQDLLSKLDEIEKRIHELAGEAFNINSPKQLGVILFEKLGLPAIKK 550

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTG + T+A  LE++    + II++IL +RQL K++STY + L   +N  T +VHT ++
Sbjct: 551 TKTG-YSTSADVLEKLENS-HEIIRDILHYRQLGKLQSTYIEGLLKVVNYETGKVHTRFN 608

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAK 763
            A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ S P   + +ADYSQIELR+LAHIA 
Sbjct: 609 QALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPGWAIFAADYSQIELRVLAHIAN 668

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + F   +DIH   A E+F VN  +V+  MRRHAK +NF I+YGIS + L+  L I
Sbjct: 669 DEKLIEAFIEDMDIHTKTAMEVFHVNANEVTSNMRRHAKAVNFGIVYGISDYGLSQSLGI 728

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EA  +I RY   +PG+ +Y++   +  +Q GYV T+  RR +  EI S   ++R+  
Sbjct: 729 TRKEAGKFIDRYLESYPGVKQYMDDIIHDAKQKGYVSTLLHRRRYLPEITSRNFNLRSFA 788

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N PIQGSAADI ++AMI +   L   +L  ++LLQ+HDEL+FEVPE+EI T  +I
Sbjct: 789 ERTAMNTPIQGSAADIIKKAMIDMADRLRKEELKARLLLQVHDELIFEVPEDEIETLKKI 848

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +   ME A    + L+VPLKV+      W
Sbjct: 849 VPDVMENA----VELKVPLKVDYSFGPTW 873



 Score =  207 bits (526), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 175/301 (58%), Gaps = 11/301 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML ++L++ +     +H  V FD
Sbjct: 6   LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAVYGFTMMLQRILEDEK----PTHLLVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + +YK  R K P  L  Q P +R    A+GI   E++ +EADDII T + 
Sbjct: 61  AGKTTFRHKTFSEYKGGRQKTPPELSEQFPYIRELLDAYGISRYELENYEADDIIGTLSL 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181
            AEK+G+ V +IS DKDL QL S    +  T K    DIE     H+ +K+GI  ++++ 
Sbjct: 121 HAEKDGYEVKVISGDKDLTQLSSDAVTVSITRKG-ITDIEEYTPAHIEEKYGITADRIID 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GDS DNIPG+PG+G KTA  LL+E+G LE +L +  ++  KK +E + E+ + A 
Sbjct: 180 MKGLMGDSSDNIPGVPGVGEKTALKLLKEFGTLEELLDSVDKVSGKKLKEKLEEFRDQAL 239

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S++L  +  + P+ I +E +  E  +  ++I+  K L F  L+ ++    +     +E 
Sbjct: 240 MSKELATITREAPVEIKIEDIEYEGFDKEKVINIFKELGFNSLLEKLGGDTEAVEEKLEE 299

Query: 302 V 302
           +
Sbjct: 300 I 300


>gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
 gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
          Length = 886

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/528 (40%), Positives = 331/528 (62%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L++  E++   K   +IK   + LHR  I   G + D++L SY++++  +S+D+  IA  
Sbjct: 367 LRQMLEDKTIKKNVFDIKRTYVGLHRLDIKAEGLDYDMLLASYLVNNENNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +K ++P     D+   EH      VI +L   L  KL   +   
Sbjct: 427 YDDYSVKTDLEVYGKGKKQAVP----DDNDFFEHLAAKVAVIEKLKTPLLEKLKDHEQDD 482

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE ++ P+  V+++MEITGI+++  +L Q+  + +  L  LE  IY  +GE+FNL+SPK
Sbjct: 483 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 542

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + LEQ+    +PI+  IL++RQ++KI++TY   
Sbjct: 543 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745
           L + I +   R+HT Y    T TGRL+S++PNLQNIP KT+ G++IR+AF+ P TK   +
Sbjct: 601 LLDCI-QPDGRIHTRYLQTLTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFV-PSTKDGYI 658

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804
            S DYSQ+ELR+LAH++    + + F++  DIH   A +IF ++  ++V+P MRRHAK +
Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I+ YF ++P I  Y+++     R+NGY ETI  
Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMH 778

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I+S   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM+LQ+
Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 839 HDELIFDVPKDELDTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 882



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 163/290 (56%), Gaps = 19/290 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK------HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L R+       DGL  NAI  F NML  ++    K++  ++
Sbjct: 6   LLLIDGNSVAFRAFYA---LYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR E+Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T + + E  G+ V I++ D+DL QL S  T +  T K    D E     H+ +  G+ 
Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLIT-KNGVGDTEAYTPAHMKEVNGVT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E +  +   +K+ K +EN++ 
Sbjct: 178 PTEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSIEELYEHVDEMKKSKLKENLIN 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
             + A L++KL  +  D P+ + L    L++ N   L +  + L F K +
Sbjct: 238 DKDKAFLAKKLATIDRDSPVEVTLADTKLQEPNIEDLRNLYERLGFKKFL 287


>gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii]
 gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii]
          Length = 881

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/517 (39%), Positives = 309/517 (59%), Gaps = 13/517 (2%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----- 516
           LK   ++K   L LHR GI M G + D M+  Y+L+  R +H + +IA   LSY      
Sbjct: 368 LKAVQDLKPLLLALHRQGIDMPGPYFDTMVADYLLNPNRRAHTLEAIAMDLLSYQLGAGE 427

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
           R++  K  +S   +D+    +  E A     V  ++  +LR +L  +  L +++ ++ P+
Sbjct: 428 REDTSKGPQSLFDVDEALVRRTGEAAA----VTAKVAPMLRERLKEQGSLSLFQDVEMPL 483

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V++++E  G  +D   L+ +S E+   L  +  +IY L G +FN+ SPKQL  +LF  
Sbjct: 484 VPVLAEIERNGFLLDVAGLQALSKELEHELEQMVGSIYRLGGGEFNIGSPKQLATVLFET 543

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L      KTKTG + T    L Q+    + +   IL +R L+K+KSTY D+LP  +N  T
Sbjct: 544 LGLKPLRKTKTG-YSTDEDTLTQL-ASQHELPAQILNYRTLTKLKSTYVDALPQLVNPET 601

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           +R+HT  +     TGRL+S +PNLQNIP+K D G +IR AFI+PP  +L+ ADYSQ+E R
Sbjct: 602 KRLHTSLNQTVAATGRLSSTDPNLQNIPVKGDYGLRIREAFIAPPGHQLLCADYSQVEPR 661

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH+++   L QVFE   DIH   A EIF +   +V+  MRR AK++ F I+YGISPF 
Sbjct: 662 ILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVFGIVYGISPFG 721

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA+ + +P+++A  YI+ +F +F  +   +++  +  +  GY  TI GRR    E+    
Sbjct: 722 LASNIGVPQADAKKYIETFFEKFAAVRALMDRNIDDGKTKGYTTTILGRRRPIPELQGGD 781

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            S R + ER A+N+PIQGSAAD+ + AMI VH+ L++     KM+LQ+HDEL+FEVPE+E
Sbjct: 782 PSQRGVGERMAVNSPIQGSAADLIKVAMIKVHQRLQNELPRCKMILQVHDELIFEVPEQE 841

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +  A Q++   ME A    + L VPLKV++ V  NW+
Sbjct: 842 LEQAKQLVKAEME-ATGAALGLSVPLKVDLGVGLNWR 877



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/278 (38%), Positives = 165/278 (59%), Gaps = 5/278 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS++IYRAF+A P LS    GL  NA+ GF  ML K+L++ R +    + AV+FD
Sbjct: 4   LYLIDGSAYIYRAFFALPPLSNSK-GLQTNAVYGFTTMLLKVLRDHRPD----YVAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T R+E + DYKA RP +P+ +  Q+P +    +A  +P I   G+EADD+I T   
Sbjct: 59  EKGPTHRHEAFKDYKAQRPPMPQGMSAQIPYIHRVVEALSLPVIRQAGYEADDLIGTLAR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             E EG  V I+++DKD+ QL++P T +YD VK++         ++G+ P ++V +  L 
Sbjct: 119 KGEVEGLEVVIVTSDKDMFQLLTPKTRIYDPVKDKWFGEADSQGRFGVEPARVVEIMGLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+ GIG KTA  L+ ++G +E +L     +   K ++ +LE  E AR+S++L
Sbjct: 179 GDTSDNIPGVKGIGEKTAVKLITQFGTIEELLSRIEEVTPAKTKKLLLEQGEQARMSKQL 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
             ++ D P+    +H   +      L+S L+ LEF  L
Sbjct: 239 ATIQLDCPLEFVPDHFQAKAPQTETLVSLLRELEFMTL 276


>gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10]
 gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10]
          Length = 878

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/490 (40%), Positives = 302/490 (61%), Gaps = 15/490 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543
           DI + SY++D    SH+IA IA +   +     E +  K +K +IP       ++ +H  
Sbjct: 395 DIQMASYLIDPASGSHEIADIANRKNGIQVQTDEAVYGKGKKQAIP----EAEELSQHLG 450

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             +  IL L   L  +L   +   +++ L+ P+  ++ +ME  G+ +DQ  L+ +  +++
Sbjct: 451 RKAAAILDLKKNLEQELRDNRQWELFQDLEMPLSVILGRMEANGVSVDQQELETIGKDLT 510

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + L  LE+ IY+ +G+ FN++SPKQLG +LF  L  P   KTKTG + T+A  LE++  G
Sbjct: 511 ERLAKLEQQIYEAAGQSFNINSPKQLGKVLFEDLGLPVLKKTKTG-YSTSADVLEKLK-G 568

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           ++ +I +IL +RQL K+ STY + L   I+ +T ++HT ++ A T TGRL+S EPNLQNI
Sbjct: 569 EHDVIDHILFYRQLGKLNSTYIEGLLKVIHPKTGKIHTIFNQAVTQTGRLSSTEPNLQNI 628

Query: 724 PIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           P++ + G+KIRRAF+ S P  KL +ADYSQIELR+LAHI+K   L   F+  +DIH   A
Sbjct: 629 PVRLEEGRKIRRAFVPSKPGSKLFAADYSQIELRVLAHISKDENLISAFQEGMDIHTKTA 688

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +++FGV   +V+ +MRR AK +NF I+YGIS + L+  L I R +A  +I +YF  +PG+
Sbjct: 689 SDVFGVKGNEVTAEMRRTAKAVNFGIVYGISDYGLSQNLGISRKKAQTFIDKYFESYPGV 748

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E      R+ GYV T+  RR +  ++ S   + R+  ER A+N PIQGSAADI ++
Sbjct: 749 KTYMEDIVAEAREQGYVTTMLQRRRYLPDLTSRNFNQRSFAERTAMNTPIQGSAADIIKK 808

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ +   LE   L + MLLQ+HDEL+FEVPE+EI T  +++   ME      I L VPL
Sbjct: 809 AMVDMATELERQNLKSVMLLQVHDELIFEVPEDEIETMEKLVKDVMEST----IELNVPL 864

Query: 963 KVNIKVSNNW 972
             ++   + W
Sbjct: 865 ITDMATGDTW 874



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/290 (37%), Positives = 171/290 (58%), Gaps = 10/290 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML K+L+  +     +H  V 
Sbjct: 2   NKLVLIDGNSIAYRAFFALPLLNTDK-GVYTNAVYGFTTMLLKVLEEQK----PTHLMVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E + +YK  R K P  L  QLP++R   +AF I  +E+  +EADDII T 
Sbjct: 57  FDAGKSTFRHETFKEYKGKREKTPPELAEQLPVMRDLLKAFNIDHVELTNYEADDIIGTL 116

Query: 125 -TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            T +  KE + V I + DKDL+QLV+  T ++ T K     +   ++ + +++G+ PE++
Sbjct: 117 ATQVKGKEDWDVHIYTGDKDLLQLVNGQTTVHLTKKGITNVDTYQVKDIDERYGLKPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GDS DNIPG+PG+G KTA  LL+E+G++E +  +   +  KK +E +    E 
Sbjct: 177 IDMKGLMGDSSDNIPGVPGVGEKTALKLLKEHGSVEEVYQHLDEVSGKKLKEKLEANEEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           A +S++L  +  +VP+ I  + L   + +   L S  K LEF  L++R+ 
Sbjct: 237 ALMSKQLATIFLEVPLEIKPDDLKRGEPDQAALSSLFKELEFQSLLSRIG 286


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
           bacterium]
          Length = 894

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/513 (39%), Positives = 317/513 (61%), Gaps = 11/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KE 519
           K+G NIKYD +VL   G+++ G   D ML SY+L+     H++  +A+ +L YT    KE
Sbjct: 385 KVGQNIKYDLIVLKSEGVNLVGVAFDTMLASYILNPSGRRHNMNDMARDYLGYTTTKYKE 444

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           ++ +    I  DK+      E+A E++++  +L+  L P L+      + + L+ P+I+V
Sbjct: 445 VVGTASKEIGFDKVDIELATEYAAEDADITWRLYENLSP-LLQGDDFKLLQELELPLIEV 503

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME+ G+++D+  L+++S  I + L   ++ IY L+GE+FN++SPKQL  ILF KL+ 
Sbjct: 504 LAEMELHGMKLDKSHLQKLSQLIQQKLEDQQKEIYSLAGEEFNINSPKQLSVILFEKLEL 563

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KTK G + T    LEQ+   ++ +   +L +RQL K+KSTYAD+L   I   T RV
Sbjct: 564 PVIKKTKNG-YSTDVSVLEQL-AAEHELPDVVLTYRQLVKLKSTYADALQEDIFNNTGRV 621

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++     TGRL+S  PNLQNIPI+T++G++IR+AF++     L+SADYSQ+ELR+LA
Sbjct: 622 HTSFNQTVAATGRLSSSNPNLQNIPIRTEMGREIRKAFVAEGNNHLLSADYSQVELRVLA 681

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L   F+   DIH   A EIFG   E++  + RR AK +NF I+YG+S F L+ 
Sbjct: 682 HLSEDEALVDAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNFGIVYGLSAFGLSK 741

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   +A  +I +YF  +  +  Y+ +T    ++ GY  T+  RR +  ++ S    +
Sbjct: 742 QLKIYPKDAKKFIDQYFALYKKVKVYMVETVAQAKEVGYTLTLMNRRRYLPDLKSQNRQV 801

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+P+QGSAAD+ + AMI + + +   KL ++M+LQ+HDELVFE PE+E   
Sbjct: 802 RESAERIAINSPVQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVHDELVFECPEDEEQE 861

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              ++   ME+  +P   L+VPL V+I    NW
Sbjct: 862 MRALVTKEMEE-VMP---LKVPLIVDIGWGENW 890



 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 192/347 (55%), Gaps = 13/347 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L+L+DGSS+I+RAF+          G P NA+ GF +ML K++++ + +    +
Sbjct: 1   MSKAKTLYLIDGSSYIFRAFFGIRQFLSTSTGFPTNALYGFIHMLQKVVKDEKPD----Y 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+++Y DYKANR   PE L  Q P      +A+ I  + + GFEADDI
Sbjct: 57  LAVAFDSKEKTFRHKMYEDYKANRDAPPEDLAKQFPHFEPLVKAYNIHGVRVPGFEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A +EGF V I+S DKD+MQL+ P   + DT+K +   +E V +K+G+ P+K++
Sbjct: 117 IGTLAKKAAEEGFKVVIVSGDKDMMQLIGPDIRMLDTMKNKWFGVEEVQEKFGVTPDKVI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GDS D+IPG+ G+G KTA+ L++++ ++  +      + + K ++ +L+  E A
Sbjct: 177 DVMGLMGDSSDHIPGVKGVGPKTASELIRKFSSMHELYERIDEVDKAKLKDKLLQDKEMA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+LV + T + +   LE +  +  +   L       EF+ L+  +      DA    
Sbjct: 237 LLSRELVTINTTMELPDGLEDMKFKTPDNSELRKLFSEFEFSSLLAELGD----DAGVSS 292

Query: 301 PVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQT 346
           P +     +  + I IE +++R    +K S+  +L  +T+ +N  Q 
Sbjct: 293 PAI----ESHYETILIEADLERWIEQLKKSEIFALDLETTSLNPVQA 335


>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
 gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
          Length = 879

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/544 (38%), Positives = 327/544 (60%), Gaps = 19/544 (3%)

Query: 438 DSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMS 493
           + TG   + KEI       K + E+E   K   + K   + L   GI ++G E D +L +
Sbjct: 342 NETGLYYIPKEIAIQSETFKSWAEDESMKKWVFDSKRSVVALRWQGIELKGTEFDALLAA 401

Query: 494 YVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           Y+++ G S  D+AS+A+++    +S       K  K ++P +K    ++ +H    ++ +
Sbjct: 402 YIINPGNSYDDVASVAKEYGLNIVSKDEAVYGKGAKRAVPAEK----ELADHLARKASAV 457

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
             L   L   L     L +YE L+ P+  ++ +ME  G+++D + LK++  E+   L   
Sbjct: 458 NSLRDKLLHALEENNQLELYEDLELPLALILGEMESMGVKVDVERLKRMGEELKAKLKEY 517

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
           EE I+D++GE FN++SPKQLG ILF KL  P   KTKTG + T+A  LE++    + I+ 
Sbjct: 518 EEKIHDIAGEPFNINSPKQLGVILFEKLGLPPVKKTKTG-YSTSADVLEKL-ADKHDIVA 575

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           +IL++RQ+ K++STY + L     K + +VHT ++ A T TGRL+S +PNLQNIPI+ + 
Sbjct: 576 HILQYRQIGKLQSTYIEGLLKVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEE 635

Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G+KIR+AF+ S P   + +ADYSQIELR+LAHI+K   L + F N +DIH   A ++F V
Sbjct: 636 GRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHV 695

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
           + ++V+  MRR AK +NF I+YGIS + L+  L I R EA  +I RY   FPG+  Y+E+
Sbjct: 696 SEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPGVKAYMEE 755

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
           +    +Q GYV T+  RR +  E+ S   ++R+  ER A+N PIQGSAADI ++AMI + 
Sbjct: 756 SVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMA 815

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
             L++  L  ++LLQ+HDEL+FE P+EEI    +++   ME A    + L VPLK +   
Sbjct: 816 AELKEKNLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA----LALDVPLKADYAS 871

Query: 969 SNNW 972
             +W
Sbjct: 872 GPSW 875



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/293 (38%), Positives = 170/293 (58%), Gaps = 9/293 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS +  G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E+  +EADDI
Sbjct: 56  MLVAFDAGKTTFRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYKISRYELPEYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEKEGF V ++S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAVSAEKEGFEVKVVSGDKDLTQLATGKTTVAITRKGITDVEDYTPEHVQEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  KK +E + EY
Sbjct: 176 LQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHSVEKLLDSIDEVSGKKLKEKLEEY 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            E A +S++L  + T+ PI +  E L  +  +  ++++  K L F  L+ R+ 
Sbjct: 236 KEQALMSKELATIMTNAPIEVKPEDLDYKGFDREQVVAIFKDLGFNTLLERLG 288


>gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
 gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
          Length = 929

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/410 (44%), Positives = 271/410 (66%), Gaps = 3/410 (0%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L+ VYE +D+P++ V+  ME  G+++D D+L ++S  + ++  +L   IY LSG++FN++
Sbjct: 521 LMKVYEDIDRPLVTVLYAMEAAGVKLDCDVLAEMSTRLQRDADALARKIYGLSGQEFNIN 580

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLGD+LF KL  P   K   G+  +TA D+ +   G++ + K +LE+RQ +K+KSTY
Sbjct: 581 SPKQLGDVLFNKLNLPKPVKYGKGKTISTAVDVLEGLAGEHEVPKLVLEYRQFTKLKSTY 640

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D+LPN  +  T R+HT ++ A+T TGRL+S+ PNLQNIPI+T+LG++IR AF++     
Sbjct: 641 VDALPNLCHAGTGRLHTTFAQAATSTGRLSSVNPNLQNIPIRTELGREIRAAFVAEKGNV 700

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L++ADYSQIELR+LAH ++   L   + N  DIH + A+E+FGV    +  + RR AK +
Sbjct: 701 LLAADYSQIELRLLAHFSQDRLLVDAYNNDRDIHALTASEVFGVPPMMIDAEHRRRAKAV 760

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGISPF L+ QL I   E+  YI+ YF R+ G+ E++      VR++  V T+FG
Sbjct: 761 NFGIVYGISPFGLSQQLGIDTKESKRYIESYFERYSGVREWLNSVLEQVRKDEKVSTLFG 820

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           R     +I+S   ++R   ER A N P+QG+AAD+ + AMI +H+ L + KL T+MLLQ+
Sbjct: 821 RIRPIPDIHSRNPNLRGFAERTATNTPLQGTAADLIKLAMIRIHRDLIERKLKTRMLLQV 880

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDELVFEVP+ E+     ++   ME        L VPLKV++ V  NW++
Sbjct: 881 HDELVFEVPQAEVEEVRALVQDRMENV---HPELTVPLKVDVGVGKNWRD 927



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 186/346 (53%), Gaps = 33/346 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           +K   +FL+D   F++RA++A     P+ ++   G+P +A   F NML KL Q+   E I
Sbjct: 30  KKLGRVFLIDTFGFVFRAYHAMARQRPMSTKT--GIPTSATYVFVNMLNKLRQDFAPEHI 87

Query: 58  AS--------------HFAVI--FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
           A+                A I  FD    TF+   Y  YKANR ++PE L  Q+P +  A
Sbjct: 88  AAIMEGGKTFRDEEAAAVATINKFDIKTQTFQEIAYGGYKANRTEMPEDLTQQMPYIERA 147

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
             A+ IP I  +GFEADD+I T    A   G+ V I+S+DKD+MQLV+   C+ +  K+ 
Sbjct: 148 LNAYRIPMISAEGFEADDVIGTLAKKAADGGYPVYIVSSDKDMMQLVTERVCILNPPKDN 207

Query: 162 KI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
            I D + V +  G+PPE++V + AL GDSIDN+PG PGIG K +  L+Q +G +E  L +
Sbjct: 208 LICDPKKVEEILGVPPERVVDVMALRGDSIDNVPGAPGIGDKGSVQLIQRFGTVEAALDH 267

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           A  ++ K++RE++ +  +    S+++V +RTD+ +    + +  +D +     +    LE
Sbjct: 268 AGEVESKRQRESLQQNRDAVLFSKRMVTIRTDIDMPFEPQAMRAQDPDYEACKALFAELE 327

Query: 281 FTKLINR-------VATTYDCDAAN---IEPVVLDINTTENKGIAI 316
           F  L+ +       V  T   DA +   I+ ++ D+N      +AI
Sbjct: 328 FNNLLKQFLTEGSEVGETDYADAKSTDEIKALLRDVNADHPLAVAI 373


>gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6]
          Length = 857

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/540 (38%), Positives = 325/540 (60%), Gaps = 13/540 (2%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLD-SGR 500
             L +  L+ L+ + E+   LK+ H+ K  +++L RYG+S+ G   D  L S+++D +G 
Sbjct: 325 GGLGEGALALLRGWLEDSARLKVVHDSKRLRVLLARYGVSLSGVVADPRLESFLVDPTGL 384

Query: 501 SSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             H I  + + +L  T    K +L S K +    +++ S     A + ++V++ +W  +R
Sbjct: 385 VPHRIDQLVKAFLQRTVPPAKSVLGSGKKARRFAELAASVTGAWACQRADVVVTMWPQIR 444

Query: 558 PKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
            +L  V++L H+ E +D P+ +V++ ME+ G++++   L+++SAE    LL LE  I+  
Sbjct: 445 ERLEEVDQLPHLQE-VDLPLSEVLATMELAGVRVEPTELEEMSAEFRATLLQLEAEIWRQ 503

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +G +FN++SPKQLG +LF +L  P   +TKTG + T A+ LE++   ++PI   +L+ R+
Sbjct: 504 AGREFNVASPKQLGVVLFEELNLPVIKRTKTG-YSTAAEVLERLTR-EHPIAGLLLQHRK 561

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L+K+ +TY + L   IN  T RVH  +      TGRL S  P++Q  P++T  G++IRRA
Sbjct: 562 LAKLLTTYTEVLRAAINPVTGRVHPTFQQTYAATGRLISTNPDIQKTPVRTPEGKRIRRA 621

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI  P  ++ISAD+SQIELR+LAH +    L + F    D+HR  AAE+FG   E V+  
Sbjct: 622 FIPAPGWRIISADWSQIELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDA 681

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            R  AKT+NF+ IYG     L  +L + R+EA  YI RYF  + G+ E++++T      +
Sbjct: 682 QRSVAKTVNFATIYGQGATALGQRLGLKRTEAKGYISRYFQAYAGVREWLDRTIEGALAS 741

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYVET+ GRR    E++S  + +R +  R A N PIQGSAAD+ +  M+++ K  +   L
Sbjct: 742 GYVETLLGRRRVIPELSSNSAMVRQVGMRMAANTPIQGSAADLCKLVMLTLAKRFQTRGL 801

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            T+MLLQIHDELVFE   +E+  + Q+I  +ME       +LRVPL+V+I V  NW E +
Sbjct: 802 QTRMLLQIHDELVFEAAPDEVDASCQLIREAMESVG----DLRVPLRVHIGVGANWAEAH 857



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 137/251 (54%), Gaps = 5/251 (1%)

Query: 36  NAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL 95
           NAI GF  M  K+      E      AV+FD P  TFR E+Y  YKA RP +P  L  QL
Sbjct: 4   NAIFGFAVMFRKMFAGKTPE----LGAVVFDAPGPTFRQELYEAYKAQRPPMPTDLREQL 59

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
           P +     A   P + + G+EADD+I T T  A + G  V I++ DKD  QL+ P   + 
Sbjct: 60  PWIDRLVTAHQFPILRVPGYEADDVIGTLTRQALEAGHEVMIVAGDKDFAQLIGPRVRMV 119

Query: 156 DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
           DT+++   D E V KKWG+ PE+++   AL GD +DN+PG+PGIG K A  LL+ YG+L 
Sbjct: 120 DTLRDVTYDAELVRKKWGVRPEQIIDYLALVGDKVDNVPGVPGIGAKGAVALLERYGDLA 179

Query: 216 NILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
            IL N   +K ++  + + +  E A+L R+LV + T VP+   L  L +      +L   
Sbjct: 180 GILANLDDLKGRQ-EQTLRDNRELAQLCRELVTIDTAVPLAQELASLRVRVPETSKLNEL 238

Query: 276 LKALEFTKLIN 286
              L+F  L+ 
Sbjct: 239 YMELQFYSLLT 249


>gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
 gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
          Length = 917

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/516 (38%), Positives = 321/516 (62%), Gaps = 11/516 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
           K+G NIKYD +VL  +G  +   + D ML SYVL      H++  +A+++L+Y   T ++
Sbjct: 406 KVGQNIKYDLIVLENHGFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYNTITYED 465

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           ++ + K    +  I   QV E+A E+++V  +L+ + R  +    +  +   ++ P+I V
Sbjct: 466 LVGTGKKKKELTDIDPEQVAEYAAEDADVTFRLYQIFRKSIKDSGVEPILREMEMPLISV 525

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK 
Sbjct: 526 LAKMEKTGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDNLKL 585

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KT+TG + T  + LE++  G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+
Sbjct: 586 RIVKKTQTG-FSTDHEVLEEL-VGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRI 643

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRIL 758
           HT Y+     TGRL+S +PNLQNIPI+   G+ +R+ F +     +++S DYSQIELRI+
Sbjct: 644 HTSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIM 703

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AHI+K   + + + + LDIH+  AA ++GV    V+ +MR  AK +NFS+IYG++P+ L+
Sbjct: 704 AHISKDPAMLEAYNHGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTPYGLS 763

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             LRIPR EA  +I+RY  ++PG+  Y++    F  +NGYV+T+ GRR    +INS   S
Sbjct: 764 RNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKS 823

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            +   +R AIN+PIQG++AD+ + AMI +H+ +E     ++MLLQ+HDELVFEV ++E  
Sbjct: 824 AKEAAKRIAINSPIQGTSADMIKIAMIKIHEDIEKKHYKSRMLLQVHDELVFEVHKKEKD 883

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +   ME A    ++L +P+ V  K   NW E
Sbjct: 884 DFKASMKKHMETA----MSLDLPIVVEGKFGVNWDE 915



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 148/292 (50%), Gaps = 11/292 (3%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L ++DG +F++RA+YA     L+    G P  A  GF  ML+KL+Q+       SH A+ 
Sbjct: 4   LLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLIQDY----TPSHIAMT 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD      R +I+ DYKANR  +PE L PQ+  V    +  G   ++++G EADD+I T 
Sbjct: 60  FDPGGTLERGKIFQDYKANRKPMPEDLRPQIQEVMDTLEKIGFKILKVEGQEADDVIGTL 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPEKM 179
                     + I S DKDL QL+          K+      +ID   V ++ G+  +++
Sbjct: 120 CETYRSTAKEILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGVDVKQI 179

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
                + GD+ DNIPG+ GIG K A+ LLQEY +L+ +  N  +IK    +  + E  E 
Sbjct: 180 PDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKSLDGVYKNLEKIKNPGLKTKLSEQKEN 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           A LS++L  +R D+ + I  + + + D      I + K+  +  L   +A +
Sbjct: 240 AYLSKQLATIRRDLQLGITEKDIEIPDYKSDAAILYFKSQGYNVLSKDLAKS 291


>gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1]
          Length = 883

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+++  K   ++K + + L R GI++    +DIML SY+ DS  ++ D+  +A  
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423

Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  +     EI+     ++ S+ +D +       H     +V+ +L   + P+L   + L
Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 834 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 881



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 4   LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 57  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           + T   +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 894

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/497 (39%), Positives = 317/497 (63%), Gaps = 11/497 (2%)

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
           +S + F D  + +Y+L     S+D  S+ +++LS T   + E+L     +  +++  D+ 
Sbjct: 404 VSEKAFIDTAIAAYLLHPSNESYDYESLGREFLSLTYPSKTELLGKLSINKAVNEAEDNL 463

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           ++ +A  +S    +    +  +L  E +  ++E ++ P+I V+ +M+  GI +D+  L  
Sbjct: 464 IK-YACLSSYAYYKCADKITEQLKSENMYELFETIEMPLIFVLFEMQQQGISVDKQALVD 522

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S  +   +  LE+ IY+ +GE+FN++SPKQLG ILF +L  P+G KTK+G + T A  L
Sbjct: 523 YSKVLGTKISVLEKEIYEAAGEEFNINSPKQLGVILFERLGMPNGKKTKSG-YSTAADVL 581

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P++  ILE+RQL+K+KSTYAD L  +I++   R+H  ++   T TGR++S E
Sbjct: 582 EKL-APDYPVVSKILEYRQLAKLKSTYADGLTQYISE-DGRIHGTFNQTITATGRISSTE 639

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+ ++G+ IR+ F+       + ADYSQIELRILAH++    L + + +S DI
Sbjct: 640 PNLQNIPIRMEMGKAIRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSADI 699

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AA++FGV +E+V+ + RR+AK +NF IIYG+S F L+  L I R EA +YI+RYF 
Sbjct: 700 HRATAAQVFGVPLEEVTDEQRRNAKAVNFGIIYGMSSFGLSQDLSISRKEAKEYIERYFA 759

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I  +I+   +  ++ GY  T++ RR    EI S     R+  ER A+NAPIQG+AA
Sbjct: 760 SYPTIKTFIDGLVSDAKEKGYSLTMYNRRREIPEIKSSNFMQRSFGERVAMNAPIQGTAA 819

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI+V+ +L++H L ++++LQ+HDEL+ E  E+E+ T  QI++  M+ A    ++
Sbjct: 820 DIIKLAMINVYNALKEHNLRSRLILQVHDELLVETAEDEVDTVKQIMLDGMKNA----VS 875

Query: 958 LRVPLKVNIKVSNNWQE 974
           L+VPL+V++K   +W E
Sbjct: 876 LKVPLEVDLKEGKDWLE 892



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 155/292 (53%), Gaps = 13/292 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RAFY  P L+   +G+  NA+ GF N+L+K L   + + I     V FD
Sbjct: 5   LILIDGHSILNRAFYGVPDLTNA-EGIHTNAMYGFLNILFKFLDEEKPDYIT----VAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++++  YK  R  +   L  Q+PL++   +A  I  +E +G+EADDI+ T   
Sbjct: 60  LSAPTFRHKVFDGYKGTRKPMQPELKQQVPLMKELLKAMNITVVEQEGYEADDILGTIAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            +  +G  V+I+S D+DL+QL         P T    T  E+    + V   +G+ P + 
Sbjct: 120 ESAAKGIDVSIVSGDRDLLQLADEHIKIRIPKTKKGVTEVEDYYPSD-VFNLYGVTPHEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG PG+G KTA+ ++Q+Y +L+N+  +   +K  K + +I E  E 
Sbjct: 179 IDVKALMGDTSDNIPGAPGVGPKTASAIIQKYHSLDNVFEHLCELKPPKAKISITENVEQ 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            ++SR L  ++ DVPI   +E     D          K   F  ++ +   T
Sbjct: 239 IKMSRFLSEIKIDVPIDYKVEDSKAGDFFNENSYELFKKYNFKNMLKKFENT 290


>gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
 gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
          Length = 946

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/603 (34%), Positives = 343/603 (56%), Gaps = 34/603 (5%)

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS 439
           ++Q L+  G  +F + T  +D   + P+  ++S    K   ++ V  +            
Sbjct: 368 FIQALKEKGQVAFDVETTDIDVMKAVPVGFSLS---WKAGEAWYVPLV------------ 412

Query: 440 TGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVL 496
            G  T++ E  + + +KK  EN     IG N+KYD  V+ R+G+ +     D M+ +++L
Sbjct: 413 AGGKTVSNEKAMKAVVKKHLENPALGVIGQNLKYDYKVMARWGVRIANPVFDTMVAAWLL 472

Query: 497 DSGRSSHDIASIAQKWLSY---TRKEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQ 551
           DS    +++  +A K+L Y   T  +++      S +P+DK       ++A E+++V  +
Sbjct: 473 DSASGIYNMDKLADKYLGYVTITYDQVVPKGALFSDVPLDK-----AVQYAAEDADVTWR 527

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L+    P L   K+  + + L+ P++ V++ ME+ G+++D D L     EI   +  +  
Sbjct: 528 LYETFAPMLAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRLIMFGEEIDGRVEKITR 587

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            IY+L G +FN++SPKQL  +LF +   P G KT +G   T  + LE++  G +P+   I
Sbjct: 588 EIYELCGHEFNINSPKQLQTVLFGERGLPVGRKTASGP-STAVETLEKL-VGLDPVPALI 645

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L++R L K+K+TY D+LP  ++  T RVHT +    T TGRLAS  PNLQNIPI+ D G+
Sbjct: 646 LDYRGLVKLKNTYIDALPEQVDVNTGRVHTTFIQTGTATGRLASRNPNLQNIPIRNDDGR 705

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           +IR AF+       +SADY+QIEL +LAH+     L + F    D+HR  A+ IF V  E
Sbjct: 706 RIRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREAFLAGQDVHRHTASLIFNVKPE 765

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            V+P  RR AKTINF ++YG+S FRL+ +L I  S+AA++I  YF R+ G+  ++++T+ 
Sbjct: 766 DVTPDQRRIAKTINFGVMYGMSTFRLSNELAISHSQAAEFIDSYFKRYHGVKTFVDETRK 825

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
              + G+V T+FG   H  EI S     ++  ER  +N  IQG+AADI + AM+ + +SL
Sbjct: 826 KAEETGFVSTMFGHERHVPEIRSSNRMEKSGAERVVVNTIIQGTAADIMKLAMLRISRSL 885

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           +D  +  ++LLQ+HDEL+FEV   +    S ++  +MEKA    + L VPL+ +++   +
Sbjct: 886 KDSGINARLLLQVHDELIFEVASGQEEKLSVLVKDAMEKA----VKLSVPLRSSVETGAS 941

Query: 972 WQE 974
           W +
Sbjct: 942 WGD 944



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 140/255 (54%), Gaps = 15/255 (5%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LF++DG   IYR+++A    PL  + ++G  V+A+ GF + L  +L+  + +    +  +
Sbjct: 47  LFIIDGFGIIYRSYFAFISRPL--KDYEGNNVSALFGFISTLLMILREWKPD----YLVI 100

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D    TFR+E+YP+YKA R   PE L  Q+P +     A G+P I   G EADDIIAT
Sbjct: 101 AMDEKGPTFRHELYPEYKATRDDAPEDLHAQVPRIMEVLDALGVPHIGKVGMEADDIIAT 160

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT-CLYDTVKEEK----IDIEHVIKKWGIPPEK 178
               A  +G    +++ DKDL+QLV   T  L    K E       ++ V  ++GI  ++
Sbjct: 161 LCANATAQGIESVMVTGDKDLLQLVDDMTKALRPPRKGESSYRLFGVKEVEDEFGIRADQ 220

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++   A+ GDS DN+PGI G+G K A  LL EYG+ E +  +   +    R++ + +  E
Sbjct: 221 IIDYLAILGDSSDNVPGIKGLGEKGAIKLLTEYGSFEVLYDHLDEMSPSVRKK-LEDGRE 279

Query: 239 TARLSRKLVMLRTDV 253
              LS+KLV LR D+
Sbjct: 280 MGVLSKKLVKLRDDL 294


>gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
 gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
          Length = 886

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/528 (40%), Positives = 330/528 (62%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+K  E++   K   +IK   + LHR  +   G + D++L SY++++  +S+D+  +A  
Sbjct: 367 LRKMLEDKTIKKNVFDIKRTYVGLHRLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +K ++P     D++  EH      VI +L   L  KL   +   
Sbjct: 427 YDDYSVKTDLEVYGKGKKQAVP----DDNEFFEHLAAKVAVIEKLKTPLLEKLKDHEQDD 482

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE ++ P+  V+++MEITGI+++  +L Q+  + +  L  LE  IY  +GE+FNL+SPK
Sbjct: 483 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 542

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + LEQ+    +PI+  IL++RQ++KI++TY   
Sbjct: 543 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745
           L   I +   R+HT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ P TK   +
Sbjct: 601 LLECI-QPDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTNEGKQIRKAFV-PSTKDGYI 658

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804
            S DYSQ+ELR+LAH++    + + F++  DIH   A +IF ++  ++V+P MRRHAK +
Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I+ YF ++P I  Y++      R+NGY ETI  
Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMH 778

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I+S   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM+LQ+
Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 839 HDELIFDVPKDELDTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 882



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 165/295 (55%), Gaps = 17/295 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK------HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L R+       DGL  NAI  F NML  ++    K++  ++
Sbjct: 6   LLLIDGNSVAFRAFYA---LYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR E+Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176
           I T + + E  G+ V I++ D+DL QL S  T +  T       E    +H+ +  G+ P
Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPDHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E +  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSIEELYEHVDEMKKSKLKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + A L++KL  +  D P+ + L    L++ N   L +  + L F K +  + +T
Sbjct: 239 KDKAFLAKKLATIDRDSPVEVNLADTKLQEPNIEDLRNLYERLGFKKFLAELGST 293


>gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
 gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
          Length = 883

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+++  K   ++K + + L R GI++    +DIML SY+ DS  ++ D+  +A  
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423

Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  +     EI+     ++ S+ +D +       H     +V+ +L   + P+L   + L
Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 539 KQLGVILFDKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 834 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 881



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 4   LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 57  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           + T   +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda]
 gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/557 (40%), Positives = 320/557 (57%), Gaps = 40/557 (7%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG----ISM 483
           FIDL+  TS++            S + +   +    KI +N+K   + L  +      S 
Sbjct: 357 FIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKELLIFLLNFLRTEITSA 416

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
              +DIMLM Y+L +G++   +  I Q +                  +K    Q  EH +
Sbjct: 417 SCIDDIMLMHYILSAGKNELSLNEIIQTY------------------NKSYSEQYSEHKV 458

Query: 544 ENSNVILQLWLL-----LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                    WL      L  +L   KLLH Y  +D P+  ++  +E  GI+I+  LLK +
Sbjct: 459 --------CWLKNTFDNLMSELFKNKLLHCYYEIDLPICYILRNIENNGIKINVPLLKDL 510

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDL 657
           SA++   +  LE++IY + G++FN++SPKQLG+ILF  LK P      KT  + T ++ L
Sbjct: 511 SAQLKHKIDLLEQHIYQICGQEFNIASPKQLGEILFDVLKLPHAKVSQKTKSYSTDSEVL 570

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E ++     I   +L+WRQL+K+ +TY D+LP  IN  T RVHT     ST T RL+S  
Sbjct: 571 ENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHTTLLQTSTTTSRLSSHS 630

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G K+R AF++PP  K++SADYSQIELRIL++ A I  L  VF    DI
Sbjct: 631 PNLQNIPIRSEYGLKVRSAFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDI 690

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AA+IF +N ++V+ + RR AK INF IIYGIS F LA QL I  +EAA YI  YF 
Sbjct: 691 HSSTAAQIFKINADQVTEENRRKAKAINFGIIYGISAFGLAKQLNISNTEAAQYINHYFQ 750

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I +Y+ +TK F  ++GYV+ + GRR +   INS   + RN  +RAAINAPIQ +A+
Sbjct: 751 EYPAIRQYMHETKKFAVEHGYVKNMIGRRCYIPLINSSNLTTRNFAQRAAINAPIQSTAS 810

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI   K +     A K+LLQ+HDELVFE+PEE + TA  +I  +ME   +P  +
Sbjct: 811 DIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPEELVDTACNLIKSTMEN--IPYFS 868

Query: 958 LRVPLKVNIKVSNNWQE 974
              PLKV +K+ +NW E
Sbjct: 869 F--PLKVELKIGDNWGE 883



 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 176/300 (58%), Gaps = 11/300 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   +FL+DG  FI+R ++    L   H+G P+  + GF  M+  ++     E    +  
Sbjct: 5   KNKKIFLLDGYPFIFRGYFVNQDLI-SHNGTPIGGVYGFTTMIMNIINEFNPE----YMV 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD     FR++IYP+YK +RP++P  L  Q PLVR   +   I AIE++G EADD+IA
Sbjct: 60  VVFDTGVDNFRHKIYPEYKNHRPELPSELKIQFPLVREIVKYLNISAIEMEGVEADDVIA 119

Query: 123 TYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +   +A K G A   + I+S+DKDL+QLV+    +YD +K++ I  +  I+K G+ P ++
Sbjct: 120 S---LANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYIREKETIEKLGVRPSQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               +LTGD  DNIPGIPGIG KTA  LL+++ +L NIL N + I   + R+ I E+ + 
Sbjct: 177 RDFLSLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L+ D+ + + +E+L     N  ++ + +    FT LI + +  +  + +++
Sbjct: 237 AELSWQLVGLKQDLNLNLSVENLRWSPPNAEQIRTLIHKFGFTSLITKASKLFKLELSHL 296


>gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
 gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
          Length = 883

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+++  K   ++K + + L R GI++    +DIML SY+ DS  ++ D+  +A  
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423

Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  +     EI+     ++ S+ +D +       H     +V+ +L   + P+L   + L
Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 834 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 881



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 4   LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 57  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           + T   +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIEQIKASKIKEYLIR 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
 gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
          Length = 890

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+++  K   ++K + + L R GI++    +DIML SY+ DS  ++ D+  +A  
Sbjct: 371 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 430

Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  +     EI+     ++ S+ +D +       H     +V+ +L   + P+L   + L
Sbjct: 431 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 485

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 486 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 545

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 546 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 603

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 604 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 660

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 661 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 720

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 721 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 780

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 781 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 840

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 841 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 888



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 11  LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 64  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           + T   +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 124 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 182

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 183 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 242

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 243 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 302


>gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
 gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
          Length = 883

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+++  K   ++K + + L R GI++    +DIML SY+ DS  ++ D+  +A  
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423

Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  +     EI+     ++ S+ +D +       H     +V+ +L   + P+L   + L
Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 834 QIHDELLFDVPSEELDLIKTLVPKIMQQAA----QLDVPLIADANWGHNWYE 881



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 4   LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 57  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           + T   +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
 gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
          Length = 878

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/494 (40%), Positives = 310/494 (62%), Gaps = 17/494 (3%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIE 544
           +D+ + +Y+L+  +S++D   IA+ +L    +++L SRK       + +  SQ +E  ++
Sbjct: 394 QDVGIQAYLLNPLQSAYDYEDIARDYL----RQMLPSRKEVCGKKALEEVFSQEEEKTVQ 449

Query: 545 N----SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                S V    + L+  KL   ++  +Y  +++P +  +  ME  GI +++D LK+   
Sbjct: 450 MAAYLSYVPFHAYPLVLEKLREAEMEELYLTIERPTVATLYDMEKYGITVEKDALKEYGD 509

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           ++   +  LE+NIY+ +G+ FN++SPKQLG ILF  LK P   KTKTG + T+A  LE++
Sbjct: 510 QLVGRIEELEKNIYEQAGKTFNINSPKQLGVILFEDLKMPFAKKTKTG-YSTSADILEKL 568

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D PI+ NILE+RQL+K+KSTYAD L   I +   ++H+ +    T TGRL+S +PNL
Sbjct: 569 -APDYPIVSNILEYRQLTKLKSTYADGLAAFI-QEDGKIHSIFHQKVTATGRLSSSDPNL 626

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+  LG+ IR+ F+       +SADYSQIELR+LAH+A    L   + +  DIHRM
Sbjct: 627 QNIPIRMPLGRAIRKVFVPDSGYVFVSADYSQIELRVLAHMAGDEHLIDAYRHGEDIHRM 686

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+++FGV  E+V+P +RR AK +NF I+YGIS F L+  L+I R EA++YI +YF  +P
Sbjct: 687 TASQVFGVPFEEVTPLLRRSAKAVNFGIVYGISAFGLSQDLKISRKEASEYIDKYFATYP 746

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GI  Y++    F ++ GYV+T++GR     E++S     R+  ER A+N+ IQG+AADI 
Sbjct: 747 GIKTYLDGNVAFAKKEGYVKTLYGRVRPIPELSSSNFMQRSFGERVAMNSSIQGTAADII 806

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI V K L++ KLA++++LQIHDEL+ E  E+E+    +I+   M  A     +L+V
Sbjct: 807 KIAMIRVSKRLQEEKLASRLILQIHDELLIETKEDEVEEVRKILKEEMMGAA----DLKV 862

Query: 961 PLKVNIKVSNNWQE 974
           PL ++I+    W E
Sbjct: 863 PLSIDIEEGKTWYE 876



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 146/259 (56%), Gaps = 13/259 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG S + RAFY  P L+   +G   NA+ GF N++ + ++  +     +H  V 
Sbjct: 3   DKIMLLDGHSLLNRAFYGLPDLTNA-EGKHTNAVLGFLNIMLRYVEEEK----PTHLLVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R  +P  L  Q+PL++   +   IP I   G EADDI+ T 
Sbjct: 58  FDRKEPTFRHIKYKEYKGTRKPMPAELHEQVPLMKEVLKTMEIPIITQAGIEADDILGTI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
              AE+ GF V I+S D+DL+QL +       P T    TV E+  + E V + +G+ P 
Sbjct: 118 GKEAEEAGFDVAIVSGDRDLLQLATKKVKIKIPKTKASGTVTEDYYE-EDVRELYGVSPT 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++ L GD+ DNIPG+PGIG KTAA +++EY ++EN   +   IK  + + N+ EY 
Sbjct: 177 EFIDMKGLMGDTSDNIPGVPGIGEKTAAKIIKEYHSIENAHEHIEEIKPARAKNNLQEYY 236

Query: 238 ETARLSRKLVMLRTDVPIT 256
           E A +S+ L  ++ D  I+
Sbjct: 237 EQAIMSKDLATIKKDCDIS 255


>gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
 gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
          Length = 886

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/528 (40%), Positives = 328/528 (62%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L++  E++   K   +IK   + LHR  I   G + D++L SY++++  +S+D+  +A  
Sbjct: 367 LRQMLEDKKIKKNVFDIKRTYVGLHRLDIDAEGLDYDMLLASYLVNNENNSNDLGEVAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +K ++P     D +  EH      VI +L   L  KL   +   
Sbjct: 427 YGDYSVKTDLEVYGKGKKKAVP----EDDEFFEHLAAKVVVIEKLKQPLLEKLKDHEQDD 482

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE ++ P+  V+++MEITGI+++  +L Q+  + +  L  LE  IY  +GE+FNL+SPK
Sbjct: 483 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFALKLQELEHKIYQQAGEEFNLNSPK 542

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + LEQ+    +PI+  IL++RQ++KI++TY   
Sbjct: 543 QLGHILFEKLNLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745
           L   I +   R+HT Y    T TGRL+S++PNLQNIP +TD G++IR+AF+ P TK   +
Sbjct: 601 LLECI-QPDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTDEGKQIRKAFV-PSTKDGYI 658

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804
            S DYSQ+ELR+LAH++    + + F++  DIH   A +IF ++  ++V+P MRRHAK +
Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I  YF ++P I +Y++K     R+ GY ETI  
Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIDNYFEQYPQIKDYMDKAIKEAREKGYAETIMH 778

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I+S   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM+LQ+
Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+F+VP+ E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 839 HDELIFDVPKAELDTIKKIVPEVMQSA----VTLDVPLIADSNWGHNW 882



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 164/292 (56%), Gaps = 11/292 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R    DGL  NAI  F NML  ++    K++  S+  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTDPSNVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179
            + + E+ G+ V I++ D+DL QL S  T +  T       E    EH+ +  G+ P + 
Sbjct: 122 LSKMGEEAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++E +  +   +K+ K +EN++   + 
Sbjct: 182 IDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSVEKLYEHVDEMKKSKLKENLINDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           A L++KL  +  D P+ + L    LE+ N   L +  + L F K +  +  +
Sbjct: 242 AFLAKKLATIDRDSPVEVTLADTKLEEPNIEDLRNLYERLGFKKFLAELGVS 293


>gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
 gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
          Length = 890

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/534 (38%), Positives = 310/534 (58%), Gaps = 10/534 (1%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDI 505
           ++ L  L +   +   LKIG N+KYD  VL R G+S+ G   D M+  Y+L+  ++SH +
Sbjct: 363 RQALDLLGQALADPGLLKIGQNLKYDLNVLRRAGLSVAGPLFDTMVADYLLNPAKASHGL 422

Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +IA + L       +E +  +       +    +   +A E+++V LQ    L PKL  
Sbjct: 423 EAIAAEHLGRGVIGFEEAVGGKGKGFA--QAPPERAVPYAAEDADVALQAAQALGPKLDE 480

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
             L  +++ L+ P+  ++++ME  G+ ID + L ++SAE+ + L + E+ IY L+G +FN
Sbjct: 481 ADLRRLFDELEMPLTPLLAKMERYGVLIDAEELGRLSAELDQALAAGEQKIYALAGHEFN 540

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++S +QLG +LF +L      KTK     +T   +  I    +P+   +L +R  +K+KS
Sbjct: 541 INSTQQLGQVLFDELGLSQVKKTKKRTAYSTDMSVLAILAAQHPLPAEVLAYRANAKLKS 600

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  IN  T RVHT ++   T TGRL+S +PNLQNIP++ +LG+++R  F+  P 
Sbjct: 601 TYVDALPALINPDTGRVHTSFNQCVTATGRLSSSDPNLQNIPVRGELGRRMRGCFVPAPG 660

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           + L+SADYSQIELR+LAH+++   + Q     LD+H   AA IF V    V+ +MR  AK
Sbjct: 661 RLLVSADYSQIELRVLAHLSQDPLMLQDMAEGLDVHTQTAARIFDVMPGLVTREMRVRAK 720

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           T+NF ++YG+S FRLA +  + R+EA D I RY  R+ G+  + ++  +  RQ GYV TI
Sbjct: 721 TVNFGVLYGMSAFRLAREQGVSRAEAEDIIARYLGRYQGVARFQQQNLSQCRQRGYVTTI 780

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GRR     INS     R   ER A+N PIQGSAADI + AM+ V + L  H   + M+L
Sbjct: 781 LGRRRFLPAINSSDRQAREAAERVALNTPIQGSAADIIKLAMLRVDEMLTRHYPDSPMIL 840

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           Q+HDELVFE PE  +   +Q +   ME      + L V LKV++    +W + +
Sbjct: 841 QVHDELVFETPEGGVEQFAQAVRRCMEDV----LKLDVELKVDVGWGRDWAQAH 890



 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/291 (44%), Positives = 184/291 (63%), Gaps = 5/291 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  +FL+D S +I+RAF+A   L+   DG+P  A+ GF NML K+L  +R     SH
Sbjct: 1   MPDKPTIFLLDASGYIHRAFHAVKGLA-TSDGVPTGAVFGFVNMLLKVLAEARP----SH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV++D    TFR++I+P YKANRP +   L  QLPLVR    A  +PA+E++GFEADD+
Sbjct: 56  LAVVYDAKGPTFRHQIFPAYKANRPPMDPALKAQLPLVRQLVTALCLPAVEMEGFEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    A ++GF V ++S DKDL+QLV P   L+DT+K+ ++  E V +K G+PPE  V
Sbjct: 116 MATLARQAREQGFEVVLVSADKDLLQLVGPGVSLWDTMKDLRLGPEEVRQKTGLPPELQV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QALTGD+ DN+PG+PG+G KTA  LL E+  LE +L  A  +K+ K RE+++E  + A
Sbjct: 176 DMQALTGDASDNVPGVPGVGPKTAVKLLAEHPGLEAVLAAAPAMKKSKLRESLIENKDMA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            LSR+LV LR D P+        + + +   L+  L  LEF KLI   A  
Sbjct: 236 LLSRRLVRLRDDAPLRFEPAAFRVVEPDRDVLLPLLTRLEFNKLIKDFAAA 286


>gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 886

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/528 (40%), Positives = 329/528 (62%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+K  E++   K   +IK   + LHR  +   G + D++L SY++++  +S+D+  +A  
Sbjct: 367 LRKMLEDKTIKKNVFDIKRTYVGLHRLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +K ++P     D++  EH      VI +L   L  KL   +   
Sbjct: 427 YDDYSVKTDLEVYGKGKKQAVP----DDNEFFEHLAAKVAVIEKLKTPLLEKLKDHEQDD 482

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE ++ P   V+++MEITGI+++  +L Q+  + +  L  LE  IY  +GE+FNL+SPK
Sbjct: 483 LYETIEIPAAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 542

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + LEQ+    +PI+  IL++RQ++KI++TY   
Sbjct: 543 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745
           L   I +   R+HT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ P TK   +
Sbjct: 601 LLECI-QPDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTNEGKQIRKAFV-PSTKDGYI 658

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804
            S DYSQ+ELR+LAH++    + + F++  DIH   A +IF ++  ++V+P MRRHAK +
Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I+ YF ++P I  Y++      R+NGY ETI  
Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMH 778

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I+S   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM+LQ+
Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 839 HDELIFDVPKDELDTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 882



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 165/295 (55%), Gaps = 17/295 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK------HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L R+       DGL  NAI  F NML  ++    K++  ++
Sbjct: 6   LLLIDGNSVAFRAFYA---LYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR E+Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176
           I T + + E  G+ V I++ D+DL QL S  T +  T       E    +H+ +  G+ P
Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPDHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E +  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSIEELYEHVDEMKKSKLKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + A L++KL  +  D P+ + L    L++ N   L +  + L F K +  + +T
Sbjct: 239 KDKAFLAKKLATIDRDSPVEVTLADTKLQEPNIEDLRNLYERLGFKKFLAELGST 293


>gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 917

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/516 (38%), Positives = 321/516 (62%), Gaps = 11/516 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
           K+G NIKYD +VL  +G  +   + D ML SYVL      H++  +A+++L+Y   T ++
Sbjct: 406 KVGQNIKYDLIVLENHGFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYNTITYED 465

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           ++ + K    +  I   QV E+A E+++V  +L+ + R  +    +  +   ++ P+I V
Sbjct: 466 LVGTGKKKKELTDIDPEQVAEYAAEDADVTFRLYQIFRKSIKDSGVEPILREMEMPLISV 525

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK 
Sbjct: 526 LAKMEKTGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDDLKL 585

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KT+TG + T  + LE++  G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+
Sbjct: 586 RIVKKTQTG-FSTDHEVLEEL-AGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRI 643

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRIL 758
           HT Y+     TGRL+S +PNLQNIPI+   G+ +R+ F +     +++S DYSQIELRI+
Sbjct: 644 HTSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIM 703

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AHI+K   + + + + LDIH+  AA ++GV    V+ +MR  AK +NFS+IYG++P+ L+
Sbjct: 704 AHISKDPAMLEAYNHGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTPYGLS 763

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             LRIPR EA  +I+RY  ++PG+  Y++    F  +NGYV+T+ GRR    +INS   S
Sbjct: 764 RNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKS 823

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            +   +R AIN+PIQG++AD+ + AMI +H+ +E     ++MLLQ+HDELVFEV ++E  
Sbjct: 824 AKEAAKRIAINSPIQGTSADMIKIAMIKIHEDIEKKHYKSRMLLQVHDELVFEVHKKEKD 883

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +   ME A    ++L +P+ V  K   NW E
Sbjct: 884 DFKASMKKHMETA----MSLDLPIVVEGKFGVNWDE 915



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 148/292 (50%), Gaps = 11/292 (3%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L ++DG +F++RA+YA     L+    G P  A  GF  ML+KL+Q+       SH A+ 
Sbjct: 4   LLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLIQDY----TPSHIAMT 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD      R +I+ DYKANR  +PE L PQ+  V    +  G   ++++G EADD+I T 
Sbjct: 60  FDPGGPLERGKIFQDYKANRKPMPEDLRPQIQEVMDTLEKIGFKILKVEGQEADDVIGTL 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPEKM 179
                     + I S DKDL QL+          K+      +ID   V ++ G+  +++
Sbjct: 120 CETYRSTAKEILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGVDVKQI 179

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
                + GD+ DNIPG+ GIG K A+ LLQEY +L+ +  N  +IK    +  + E  E 
Sbjct: 180 PDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKSLDGVYKNLEKIKNPGLKTKLSEQKEN 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           A LS++L  +R D+ + I  + + + D      I + K+  +  L   +A +
Sbjct: 240 AYLSKQLATIRRDLQLGITEKDIEIPDYKSDAAILYFKSQGYNVLSKDLAKS 291


>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
          Length = 879

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/531 (39%), Positives = 323/531 (60%), Gaps = 26/531 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K + E+E   K   + K   + L   GI ++G E D +L +Y+++ G S  D+AS+A++
Sbjct: 360 FKSWAEDESKKKWVFDSKRSVVALRWQGIELKGTEFDALLAAYIINPGNSYDDVASVAKE 419

Query: 512 W----LSYTRKEILKSRKSSIPIDK-ISDSQVQEHAIENSNVILQLWLLLRPKLI----V 562
           +    +S       K  K ++P +K ++D   ++ A  NS         LR KL+     
Sbjct: 420 YGLNIVSKDEAVYGKGAKHAVPAEKELADHLARKAAAVNS---------LRDKLLHALKE 470

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
              L +YE L+ P+  ++ +ME  G+++D + LK++  E+   L   EE I+D++GE FN
Sbjct: 471 NNQLELYEDLELPLALILGEMESMGVKVDVERLKRMGEELRAKLKEYEEKIHDIAGEPFN 530

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG ILF KL  P   KTKTG + T+A  LE++    + I+  IL++RQ+ K++S
Sbjct: 531 INSPKQLGVILFDKLGLPVVKKTKTG-YSTSADVLEKL-ADKHDIVAYILQYRQIGKLQS 588

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741
           TY + L     K + +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ S P
Sbjct: 589 TYIEGLLKVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEP 648

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              + +ADYSQIELR+LAHI+K   L + F N +DIH   A ++F V+ ++V+  MRR A
Sbjct: 649 DWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQA 708

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF I+YGIS + L+  L I R EA  +I RY   FPG+  Y+E++    +Q GYV T
Sbjct: 709 KAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTT 768

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +  RR +  E+ S   ++R+  ER A+N PIQGSAADI ++AMI +   L++  L  ++L
Sbjct: 769 LMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKNLKARLL 828

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+FE P+EEI    +++   ME A    ++L VPLK +     +W
Sbjct: 829 LQVHDELIFEAPKEEIKILEKLVPEVMEHA----LDLDVPLKADYASGPSW 875



 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 116/319 (36%), Positives = 177/319 (55%), Gaps = 18/319 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS +  G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E+  +EADDI
Sbjct: 56  MLVAFDAGKTTFRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYNISRYELPEYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAVSAEKDGFEVKVFSGDKDLTQLATGKTTVAITRKGITDVEDYTPEHVEEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  KK +E + EY
Sbjct: 176 LQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHSVEKLLDSIDEVSGKKLKEKLGEY 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY---- 292
            E A +S++L  + T+ PI + LE L  +  +  ++++  K L F  L+ R+        
Sbjct: 236 KEQALMSKELATIMTNAPIEVKLEDLDYQGFDREQVVAIFKDLGFNTLLERLGEESGETA 295

Query: 293 -----DCDAANIEPVVLDI 306
                D D   +E +  D+
Sbjct: 296 EEDFEDIDVETVEEITEDM 314


>gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
 gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
          Length = 883

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+++  K   ++K + + L R GI++    +DIML SY+ DS  ++ D+  +A  
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423

Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  +     EI+     ++ S+ +D +       H     +V+ +L   + P+L   + L
Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 834 QIHDELLFDVPSEELDLIKILVPKIMQQAA----QLDVPLIADANWGHNWYE 881



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 163/297 (54%), Gaps = 13/297 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA      K    DGL  NAI  F NML  LL+N +     +H  V
Sbjct: 4   LLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNMLDVLLKNIQ----PTHMLV 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+ T
Sbjct: 60  AFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDILGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEK 178
              +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ P++
Sbjct: 120 MAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVTPKQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+    +++K  K +E ++    
Sbjct: 179 FIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIAQVKASKIKEYLIRDKN 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 239 NAILGKKLATIDCTSPVDLKIDDVELQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23]
 gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23]
          Length = 888

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/528 (41%), Positives = 320/528 (60%), Gaps = 18/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   +++   K   N K   + LHR GI +     D++L SY+L++  +S+D+  +AQ+
Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHRLGIPLENINFDLLLASYLLNTNDNSNDLGQVAQE 425

Query: 512 WLSY----TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
              Y    T +E+  K  K ++P D   D     H    +  I QL   L  KL   K  
Sbjct: 426 H-GYDDVRTDEEVYGKGAKRTVPDD---DETFFSHLATKARAIEQLRKDLFAKLDENKQT 481

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +Y  ++ P+  V+++MEI G+ +D   LK + +++++ L  +E  IY  +GE+FN++S 
Sbjct: 482 PLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEFNINST 541

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK P   KTKTG   +TA D+ +     +PI++ ILE+RQ++K++STY  
Sbjct: 542 KQLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADKSPIVEQILEYRQIAKLQSTYIA 599

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            L   I+   Q++HT Y    T TGRL+S++PNLQNIP++   G+ IR+AF+ S    ++
Sbjct: 600 GLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQI 659

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTI 804
            S+DYSQ+ELR+LAHI     L + F+N  DIH   A  IF +  + ++   MRR AK +
Sbjct: 660 FSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAV 719

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + LA ++ + R+EA ++I+ YFH FPG+ +YI  T  F ++NGYVETI  
Sbjct: 720 NFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITH 779

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I++   S R+  ER A+N PIQGSAADI + AMI +   LE   L  KMLLQI
Sbjct: 780 RRRYLPDIHAKSFSKRSFAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQI 839

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDELVFE P+EEI   S+++   M+ A    + L VPLKV+ K  + W
Sbjct: 840 HDELVFEAPKEEIPVLSELVPKVMDSA----VKLDVPLKVDSKYGDTW 883



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 167/314 (53%), Gaps = 13/314 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S ++RAF+A      K    DGL   AI GF  ML  +LQN + ++      V
Sbjct: 5   LLLIDGNSIVFRAFFAMHNQMDKFTNKDGLHTAAIYGFKLMLDHVLQNFKPDAAL----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K P  L  Q+P VR   +  G+ + E+  +EADDII T
Sbjct: 61  AFDAGKVTFRTKMYDDYKGGRNKTPNELTEQIPYVRELIKDSGLHSYELPNYEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179
               A+  G+   I++ D+DL QL S  T +  T K     E     HV +K GI P ++
Sbjct: 121 LAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTPAHVEEKLGITPRQI 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+  IG KTA  L++++G++E +  +   +K+ K +E+++E  E 
Sbjct: 181 IDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYDHIDDLKKSKMKEHLIEDEEV 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--VATTYDCDAA 297
           AR  + L  +  D PI I L+ L  +      LI F K + F   + +  V  T + D A
Sbjct: 241 ARQCKTLATILQDAPIKIGLDDLQYQGPQTDDLIKFYKEMGFKSFLKKMDVDGTGEEDEA 300

Query: 298 NIEPVVLDINTTEN 311
            I P+     T +N
Sbjct: 301 EIAPIDYTALTKDN 314


>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
 gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
          Length = 876

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 431 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 476

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 477 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 535

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 536 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 593

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 594 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 653

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 654 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 713

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 714 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 773

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+
Sbjct: 774 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 833

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 834 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 872



 Score =  217 bits (552), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 118/289 (40%), Positives = 173/289 (59%), Gaps = 11/289 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H  V FD
Sbjct: 5   LVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTHMLVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDII T   
Sbjct: 60  AGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTLAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181
            AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ PE++V 
Sbjct: 120 RAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVREKYGLTPEQIVD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +E + ++ E A 
Sbjct: 179 LKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMAL 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           LS+KL  +R D P+ + L+ +  +  +  ++++  K L F   + ++ +
Sbjct: 239 LSKKLAAIRRDAPVELSLDDIAYQGEDREKVVALFKELGFQSFLEKMES 287


>gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4]
 gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4]
          Length = 885

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/504 (41%), Positives = 321/504 (63%), Gaps = 17/504 (3%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKS-RKSSIPI 530
           LHR G+++     DI+L SY+LD+  +S+D+  +A +       T  E+  +  K ++P 
Sbjct: 388 LHRLGVTLNSINYDILLQSYLLDTNDNSNDLGQLAHEHDIEDIKTDAEVYGTGAKRAVPA 447

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    + EH     +VI +L   L+ +LI  +   +Y +++ P+  V+++MEI+GI++
Sbjct: 448 KDV----LLEHLAHKIDVIGELGRRLQEELINNQQADLYWKIELPLSIVLAKMEISGIKV 503

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D++ L  + +E+++ L  LE  I+  +GE+FN++SPKQLG ILF KL+FP   KTKTG +
Sbjct: 504 DRERLGAMQSELTERLSELESQIHQEAGEEFNINSPKQLGHILFEKLEFPVIKKTKTG-Y 562

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LE++  G +PII +IL++R ++KIKSTY D L   I+   Q+VHT Y    T T
Sbjct: 563 STAVNVLEKLR-GYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQT 621

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S +PNLQNIPI+ + G+KIR+AF+ S     ++S+DYSQIELR+LAHI     L +
Sbjct: 622 GRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHEGWHILSSDYSQIELRVLAHITGDHHLQE 681

Query: 770 VFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  IFG+ +  +V+P +RR AK +NF I+YGIS + L+  + I R +A
Sbjct: 682 AFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRKDA 741

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I  YF  +PG+ +Y++ +    R+ GYVETI  RR +  +I++   S+R+  ER A+
Sbjct: 742 KRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRRYLPDIHASNFSVRSFAERTAM 801

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AMI++   LE  +L T+MLLQ+HDEL+FEVP+EE++   +++   M
Sbjct: 802 NTPIQGSAADIIKIAMINMQNELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVM 861

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           + A    I L VPLKV     NNW
Sbjct: 862 DSA----IKLDVPLKVETSWGNNW 881



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 158/285 (55%), Gaps = 11/285 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++ L L+DG+S  +R+F+A    L   K+ DGL  NAI GF  ML  +L    K+   + 
Sbjct: 3   KDKLLLIDGNSIAFRSFFALHNSLEKFKNPDGLHTNAIFGFNKMLDSIL----KQYQPTA 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P  L  Q+P ++     +GI   E+  +EADDI
Sbjct: 59  ALVAFDAGKTTFRTEMYDDYKGGRSKTPPELSEQMPYIKQLLTGYGIKTYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++ + V +++ D+DL QL S  T +  T K     E+    HV +K GI P
Sbjct: 119 IGTLSLAAERDNYEVVVVTGDRDLTQLSSAETTVAVTKKGVSEVEEYTPRHVKEKLGITP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ L+ L GD+ DN PG+  +G KTA  LL+++G +EN+  N   +K  K +E+++E 
Sbjct: 179 EQIIDLKGLAGDTSDNYPGVTKVGEKTALKLLKQFGTIENLYDNLDDLKPSKMKEHLIED 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
            + A  S+ L  ++ D P+ I L  L  +  N   L  F + ++F
Sbjct: 239 RDAAFTSKTLATIKRDAPVEIGLADLKYDGKNITFLQEFYQKMKF 283


>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
          Length = 878

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 433 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 478

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 479 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 537

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 538 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 595

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 596 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 655

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 656 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 715

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 716 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 775

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+
Sbjct: 776 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 835

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 836 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 874



 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 11/295 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H
Sbjct: 1   MRLKKKLVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPEAVREKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +E + +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKETLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + E A LS+KL  +R D P+ + L+ ++ +  +  ++++  K L F   + ++ +
Sbjct: 235 HREMALLSKKLAAIRRDAPVELSLDDIVYQGEDREKVVALFKELGFQSFLEKMES 289


>gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
 gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
          Length = 885

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/504 (41%), Positives = 321/504 (63%), Gaps = 17/504 (3%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKS-RKSSIPI 530
           LHR G+++     DI+L SY+LD+  +S+D+  +A +       T  E+  +  K ++P 
Sbjct: 388 LHRLGVTLNSINYDILLQSYLLDTNDNSNDLGQLAHEHDIEDIKTDAEVYGTGAKRAVPA 447

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    + EH     +VI +L   L+ +LI  +   +Y +++ P+  V+++MEI+GI++
Sbjct: 448 KDV----LLEHLAHKIDVIGELGRRLQEELINNQQADLYWKIELPLSIVLAKMEISGIKV 503

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D++ L  + +E+++ L  LE  I+  +GE+FN++SPKQLG ILF KL+FP   KTKTG +
Sbjct: 504 DRERLGAMQSELTERLSELESQIHQEAGEEFNINSPKQLGHILFEKLEFPVIKKTKTG-Y 562

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LE++  G +PII +IL++R ++KIKSTY D L   I+   Q+VHT Y    T T
Sbjct: 563 STAVNVLEKLR-GYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQT 621

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S +PNLQNIPI+ + G+KIR+AF+ S     ++S+DYSQIELR+LAHI     L +
Sbjct: 622 GRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHEGWHILSSDYSQIELRVLAHITGDHHLQE 681

Query: 770 VFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  IFG+ +  +V+P +RR AK +NF I+YGIS + L+  + I R +A
Sbjct: 682 AFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRKDA 741

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I  YF  +PG+ +Y++ +    R+ GYVETI  RR +  +I++   S+R+  ER A+
Sbjct: 742 KRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRRYLPDIHASNFSVRSFAERTAM 801

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AMI++   LE  +L T+MLLQ+HDEL+FEVP+EE++   +++   M
Sbjct: 802 NTPIQGSAADIIKIAMINMQNELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVM 861

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           + A    I L VPLKV     NNW
Sbjct: 862 DSA----IKLDVPLKVETSWGNNW 881



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 158/285 (55%), Gaps = 11/285 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++ L L+DG+S  +R+F+A    L   K+ DGL  NAI GF  ML  +L    K+   + 
Sbjct: 3   KDKLLLIDGNSIAFRSFFALHNSLEKFKNPDGLHTNAIFGFNKMLDSIL----KQYQPTA 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P  L  Q+P ++     +GI   E+  +EADDI
Sbjct: 59  ALVAFDAGKTTFRTEMYDDYKGGRSKTPPELSEQMPYIKQLLTGYGIKTYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++ + V +++ D+DL QL S  T +  T K     E+    HV +K GI P
Sbjct: 119 IGTLSLAAERDNYEVVVVTGDRDLTQLSSAETTVAVTKKGVSEVEEYTPRHVKEKLGITP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ L+ L GD+ DN PG+  +G KTA  LL+++G +EN+  N   +K  K +E+++E 
Sbjct: 179 EQIIDLKGLAGDTSDNYPGVTKVGEKTALKLLKQFGTIENLYDNLDDLKPSKMKEHLIED 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
            + A  S+ L  ++ D P+ I L  L  +  N   L  F + ++F
Sbjct: 239 RDAAFTSKTLATIKRDAPVEIGLADLKYDGKNITFLQEFYQKMKF 283


>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
          Length = 878

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 433 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 478

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 479 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 537

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 538 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 595

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 596 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 655

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 656 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 715

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 716 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 775

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+
Sbjct: 776 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 835

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 836 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 874



 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 11/295 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H
Sbjct: 1   MRLKKKLVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPEAVREKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +E + +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKETLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + E A LS+KL  +R D P+ + L+ ++ +  +  ++++  K L F   + ++ +
Sbjct: 235 HREMALLSKKLAAIRRDAPVELSLDDIVYQGEDREKVVALFKELGFQSFLEKMES 289


>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
 gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
          Length = 926

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/515 (38%), Positives = 320/515 (62%), Gaps = 9/515 (1%)

Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+GHN+KYD L+L ++G+ + G   D M+  Y++ +   +H++  +A+  L+Y    I  
Sbjct: 415 KLGHNLKYDLLLLKQHGVEVGGTLFDTMVAHYLV-APEENHNLDDVARSVLNYKMVPIAD 473

Query: 523 SRKSSIPIDKISDSQVQ---EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
                   D + + +V+    +A E++++  +L   L  +L    +L V   ++ P++ V
Sbjct: 474 LIGDETDRDSMREVEVETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHV 533

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ ME TGI++D D+L ++ A + + L  +EE +++L+GE+FN++S +QLG+ILF KL  
Sbjct: 534 LATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAGEEFNINSTQQLGEILFEKLDL 593

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P  +KT TG+  T    L++++  ++ I   +L+WR   K+KSTY DSL   ++  T R+
Sbjct: 594 PVVSKTPTGKPSTKESVLQELST-EHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRL 652

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S +PNLQNIPI+T++G++IRRAF+      L+SADY+QIELRILA
Sbjct: 653 HTSFNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILA 712

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    +   F+   DIH   AA ++G++ E V+P+ R  AK +N+ I YGISP+ LA 
Sbjct: 713 AMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQ 772

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++R+P  EA D IK+Y   +PG+ + + +     +  GY ET+ GRR +  +I+S  S+ 
Sbjct: 773 RMRMPVDEAQDIIKQYRKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNA 832

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER A+N PIQG+ AD+ + AM  +H  L     AT+MLLQ+HDELVFEVP +E+  
Sbjct: 833 RSAAERVAVNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPPDELDA 892

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           A  +I   M  A LP  +  VP+ V++   +NW E
Sbjct: 893 AQTMIDDEMRDA-LPLDD--VPVTVDMDTGDNWLE 924



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/296 (37%), Positives = 168/296 (56%), Gaps = 20/296 (6%)

Query: 4   ENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++ L+L+D  S  YRA Y   + PL++ K  G   +A  GF N L KL+++   E    H
Sbjct: 10  DSALYLIDAMSLAYRAHYIFISRPLINSK--GQNTSAAYGFTNSLLKLIEDHDIE----H 63

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+FD     TFR E+Y DYKANR   PE LL  +P ++   +   IP +E+ G EADD
Sbjct: 64  AAVVFDEGEEDTFRKEMYDDYKANRDPPPEELLENIPYIKEIVEGLDIPVLEVPGVEADD 123

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK-------KW 172
           +I      AE +   V I+S DKD  QL+S    +Y   K  K D +  IK       ++
Sbjct: 124 VIGALAKQAEADDADVVIVSPDKDFKQLLSDKVSIY---KPAKGDQDFEIKTGDTFRDEY 180

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P + V + AL GDS DN+PG+ GIG KTA  LL+EY ++EN++ +A  +  K+ RE 
Sbjct: 181 GLDPAQFVDMLALMGDSSDNVPGVYGIGEKTAQKLLREYHSVENLIDHADDLSGKRAREG 240

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + E+AE ARLS++LV +RT++ + +    L   + +  +L +  + LEF    +R+
Sbjct: 241 MQEHAEEARLSKRLVRIRTELDVGLDWHELQRRELDEEKLTAVFQELEFDSFGDRL 296


>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
          Length = 876

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 431 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 476

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 477 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLGTVEQRIYELAGQEFNINSPKQLG 535

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 536 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 593

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 594 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 653

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 654 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 713

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 714 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 773

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+
Sbjct: 774 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 833

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 834 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 872



 Score =  217 bits (552), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 118/289 (40%), Positives = 173/289 (59%), Gaps = 11/289 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H  V FD
Sbjct: 5   LVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTHMLVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDII T   
Sbjct: 60  AGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTLAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181
            AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ PE++V 
Sbjct: 120 RAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVREKYGLTPEQIVD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +E + ++ E A 
Sbjct: 179 LKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMAL 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           LS+KL  +R D P+ + L+ +  +  +  ++++  K L F   + ++ +
Sbjct: 239 LSKKLAAIRRDAPVELSLDDIAYQGEDREKVVALFKELGFQSFLEKMES 287


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 322/541 (59%), Gaps = 19/541 (3%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVL-DSGRSSH 503
           TK++L  L    E     KI HN K+D + L+++GI +   + D  + +++L ++     
Sbjct: 382 TKDLLDELSPLLEGGP-KKIAHNAKFDYMALYKHGIRVSPLYFDTSIAAFLLNETSVGLK 440

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           D+A+        T   ++   K+   + ++S  +   +A  ++++  +L+ +L  +++  
Sbjct: 441 DLAATRLGIQMTTIDSLIGKGKNQKTMLEVSVDECARYACADADMTFRLFTMLEKEIVER 500

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           KL  ++  L+ P++ V++ ME+TG+ ID D LK +S ++ + +  +E  IY+++G +FNL
Sbjct: 501 KLQDLFYTLEMPLVPVLADMEMTGVAIDADALKSLSTKLYEQIRDIESQIYEIAGYEFNL 560

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            SP+QL   LF  L      KT  G + T A  LE ++ G +P+I  IL +RQL+K+K T
Sbjct: 561 KSPQQLSKFLFQDLGLKGIRKTSKG-YSTDAATLEALS-GQHPVIDLILSYRQLTKLKDT 618

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D+LP  +++ T R+HT +S  S +TGRLAS +PNLQNIPI++ LG+++R+AF++   +
Sbjct: 619 YVDALPLMVSRSTGRLHTNFSQTSAVTGRLASSDPNLQNIPIRSSLGKEVRKAFVAGSPE 678

Query: 744 K----------LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           K          L+SADYSQIELR+LAH+     L + F   +DIH + A+ +FGV IE V
Sbjct: 679 KNNAIFDEPSVLLSADYSQIELRVLAHVTDEPKLKEAFSRDIDIHALTASRLFGVPIESV 738

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR  KTINF IIYG+S FRLA    + + EA  ++KRY  +FP +  Y E+     
Sbjct: 739 DDNMRRMGKTINFGIIYGMSGFRLARDTGLEQREANLFVKRYMDQFPRVKAYFEQLIKEA 798

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
            + GYVET  GRR +  +I S     R    RAAIN PIQG AADI ++AMI VH +LE 
Sbjct: 799 EKKGYVETPLGRRRYLPDITSSNPQRREAARRAAINMPIQGMAADIIKQAMIDVHSALER 858

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +  KM+LQ+HDEL+FEV E ++  A+++IV  M  A     +L VPL V  +   NW 
Sbjct: 859 EGIKAKMILQVHDELLFEVAESQLDRAAEVIVREMSTA----FDLSVPLVVEAEYGPNWG 914

Query: 974 E 974
           E
Sbjct: 915 E 915



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 158/305 (51%), Gaps = 18/305 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+D  S IYRA++A P       G   NAI GFCNML +++     +SIA  F V   
Sbjct: 9   VVLIDAYSLIYRAYHALPSDLATSKGEKTNAIYGFCNMLVQVINRENPDSIAVAFDV--- 65

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR++ + +YKA R  +P+ L  Q+  VR    AF IP  E+ G+EADD+I +   
Sbjct: 66  --GKAFRHDEFVEYKAQRAPMPDDLQAQIGRVRQVIAAFDIPVYEVPGYEADDVIGSLAK 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
               +G  V I++ DKD +QLVS       P    +  V+    D+  V  ++G  P  +
Sbjct: 124 KLSSQGHQVVIVTGDKDFLQLVSDSVSVVLPARGRFSEVQVYTPDL--VRLQYGFDPRYI 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V  +AL GD+ DNIPG+PG+G KTA  L+Q +G+L+NIL N   IK ++ R  I E+   
Sbjct: 182 VDFKALMGDASDNIPGVPGVGEKTARSLIQTFGSLQNILENVDSIKPERIRNAIKEHQSQ 241

Query: 240 ARLSRKLVMLRTDVPITIP--LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              + +L  + TD+ + I   + H    D    ++    + LEF  L+ R+   ++    
Sbjct: 242 LIQNLRLATIVTDIDVDIEPVISHAWAPDMQ--KVNEIFRELEFRSLMYRLPKYFEPQNT 299

Query: 298 NIEPV 302
           + E V
Sbjct: 300 SSEKV 304


>gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537]
          Length = 896

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/512 (39%), Positives = 320/512 (62%), Gaps = 15/512 (2%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILK 522
           +N+K  +++  R  I +R    D +L +Y+LD+  ++ ++A++AQK+  Y + +     K
Sbjct: 390 YNVKAQRVLFKRLDIELRNATFDFLLAAYLLDTTDNNAELATLAQKYDIYLQLDEDIYGK 449

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K S+P D   + +V  H    ++ + QL   +  +L   + L +Y+ ++ P+  V++ 
Sbjct: 450 GAKFSVPTD---EGRVLMHIAHKADTLNQLIEPVMVQLKEHEQLALYQDIELPLASVLAD 506

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME TGI++DQ+ L+++   +   ++ +E+ IY+ +GE+FN++SPKQLG +LF K+  P  
Sbjct: 507 MEYTGIRVDQNQLQEMGESLDAQIVDVEKAIYEEAGEEFNINSPKQLGILLFEKMGLPVI 566

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            +TKTG + T  + LE++     PI+  IL++RQL+K+KSTY D L   + ++  ++HT 
Sbjct: 567 KRTKTG-YSTAVEVLEKL-ADQAPIVAYILQYRQLAKLKSTYIDGLLAVVYRQDSKIHTR 624

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761
           Y    T TGRL+S++PNLQNIP++T+ G++IR+AF+ S P  ++  ADYSQIELR+LAH+
Sbjct: 625 YLQTLTQTGRLSSVDPNLQNIPMRTEAGRQIRKAFVPSEPNWQIFGADYSQIELRVLAHM 684

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQ 820
                L + F N  DIH   A  +FG+N +  ++   RR AK +NF I+YGIS F L+  
Sbjct: 685 TGDKNLQRAFLNDEDIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYGISDFGLSNN 744

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I R+EA  +I  YF +FP +HE++E  K    + GYVET+  RR +  +I++   + R
Sbjct: 745 LGISRAEAKRFIDTYFEKFPQVHEWMENAKTLAHEQGYVETLAKRRRYLPDIHAKNFNRR 804

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ER A+N PIQGSAADI + AMI +++ L +H L  +MLLQ+HDEL+FE P  EI   
Sbjct: 805 SFAERTAMNTPIQGSAADIIKIAMIKMNQVLHEHHLQARMLLQVHDELIFEAPTSEIPEL 864

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+   M+ A    + L VPLKV  +  +NW
Sbjct: 865 EEIVPQVMDSA----VALDVPLKVESRHGSNW 892



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 166/293 (56%), Gaps = 16/293 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  YRAFYA    L R   HDGL  NA+  F N + +++     + ++  +AV
Sbjct: 6   LLLIDGNSLAYRAFYAMYKQLDRMVTHDGLHTNALVAFNNFMDQIV-----DPMSPDYAV 60

Query: 64  IF---DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           +    D    TFR E+Y +YK+ R K P  L  QLP +R      G+   E  G EADDI
Sbjct: 61  VAWDADSGKSTFRGELYSEYKSGRAKTPTELAEQLPYMREMVAFHGLRNYEQHGLEADDI 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T++   E  G++VTI++ D+DL QL +    +  T K     E+   E++ +K+ G+ 
Sbjct: 121 IGTFSREGEALGYSVTIVTGDRDLTQLATDNITVNVTKKGVTEIERFTPEYIAEKYNGLT 180

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ALTGD+ DN PG+  IG KTA  LL +Y +L+++  N  ++K  K +EN+++
Sbjct: 181 PQQIIEMKALTGDTSDNYPGVTKIGEKTALKLLAQYQDLDHLYANIDQMKASKMKENLIK 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             + A  SRKL  + TD  + +PL        +  RLI F + L+F + + ++
Sbjct: 241 DRDQAFCSRKLATILTDADMALPLAEFEYRGIDFDRLIPFYETLDFKQQLAKI 293


>gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
 gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
          Length = 888

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/513 (39%), Positives = 318/513 (61%), Gaps = 10/513 (1%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521
           IG++IK +     +  +  + +ED+M++ Y++DS + ++DI  ++ ++L+      KE+L
Sbjct: 381 IGYDIKEELFFALKNNLEFKNYEDVMILEYLIDSNKGNYDILKVSNEFLNLEILDLKEML 440

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
              K+     ++ +  + +   +N   I  L+ +   K     L+ +YE ++KP++ V++
Sbjct: 441 GKGKNKKTFFELEEDIIFKFISQNVFAISALYDIFIEKAKENNLISLYENVEKPLVKVLA 500

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME TG+ +D++ + +++ E SK     E+ +Y+L+GE FNL+SPKQLG ILF K+  P 
Sbjct: 501 DMEKTGVLVDRNKIIELNEEYSKLAYLYEQKVYELAGEVFNLNSPKQLGVILFEKIGLPV 560

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T  + LE++    + I+  IL++R L+K+ STY D +  +I     RV T
Sbjct: 561 VKKTKTG-YSTDVEVLEKL-SKKHEIVDYILKYRSLNKLISTYLDGILEYI-MDDGRVRT 617

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +    T TGRL+S++PNLQNIPI+++ G+ IR+ F++   K  I ADYSQIELR+LAH+
Sbjct: 618 SFKQMITATGRLSSVDPNLQNIPIRSEEGKNIRKVFVADKNKVFIDADYSQIELRVLAHL 677

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +K + +   F+N LDIH   A+E+FGV I +V+   RR AK +NF I+YGIS + L+  L
Sbjct: 678 SKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKAVNFGIVYGISDYGLSKDL 737

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I R+EA  YI  Y + +P I  Y+E+  N  +++G+V TI  R+ +  EINS   +IR+
Sbjct: 738 NITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKKDGFVTTILDRKRYIPEINSKNFNIRS 797

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+N PIQGSAADI + AMI V++ L+  K+  K++LQIHDEL+ E  E E  T  
Sbjct: 798 FGERIALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQIHDELIVECEESEKETVK 857

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +I+ +SME        L +PLKV+I    NW E
Sbjct: 858 KILKNSMENVY----KLDLPLKVDICEGRNWYE 886



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/290 (37%), Positives = 167/290 (57%), Gaps = 10/290 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K   + L+DGSS I+RAFYA   L+ K DG+ VN + GF NM +K L+        +H 
Sbjct: 11  NKMKKILLIDGSSLIFRAFYAIRNLTTK-DGVFVNGVYGFLNMYYKALELIN----PTHI 65

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD  + TFR+  + DYK  R   P  +  Q  +++    +  +  +E+  +EADDII
Sbjct: 66  FVAFDKGSKTFRHNEFADYKGTRDNAPNEITYQFGILKDLLSSMNVNYLELDEYEADDII 125

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +A+KEGF V I + D+D +QLV     +Y T K     + ++ E +++++ + P+
Sbjct: 126 GTIAKLAQKEGFEVDIFTGDRDYLQLVDDNILVYLTKKGISEIKLMNTESILEEYDLSPK 185

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++AL GDS DNIPG+ G+G KTA  L+QEYGNLEN+  N   +K  K +EN++   
Sbjct: 186 QLIDVKALQGDSSDNIPGVKGVGEKTALKLIQEYGNLENLYENIDNLKG-KLKENLVNEK 244

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           + A LSR L  +   VPI   +E   ++D N    +  L+ LEF  +IN+
Sbjct: 245 DKAYLSRYLGEIFLRVPIERNIEDFEIKDVNYNEYLKKLEKLEFNSIINK 294


>gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
 gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
          Length = 883

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/532 (39%), Positives = 330/532 (62%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+++  K   ++K + + L R  I++    +DIML SY+ DS  ++ DI  +A  
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNARDIGVLANS 423

Query: 512 WL-SYTRK-EIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  SY +  EI+     ++ S+ +D +       H     +V+ +L   + P+L   + +
Sbjct: 424 YQESYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQV 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLKY-QSPIVDDILDYRQISKIQSTYIN 596

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTATGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 834 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 881



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 163/297 (54%), Gaps = 13/297 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA      K    DGL  NAI  F NML  LL+N +     +H  V
Sbjct: 4   LLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNMLDVLLKNIQ----PTHMLV 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+ T
Sbjct: 60  AFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDILGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEK 178
              +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ P++
Sbjct: 120 MAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVTPKQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+    +++K  K +E ++    
Sbjct: 179 FIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIAQVKASKIKEYLIRDKN 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            A L +KL  +    P+ + ++ L L+     +L SF + L F K ++ +    + D
Sbjct: 239 NAILGKKLATIDCTSPVDLKIDDLELQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 883

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/524 (38%), Positives = 323/524 (61%), Gaps = 10/524 (1%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E+  KIG++IK + L L  Y IS+RG + D+ +  Y+L    +S+DI+ IA +
Sbjct: 362 IKHILEDENIEKIGYDIKAEYLSLLPYDISLRGIKYDLKIAKYLLSPDNNSYDISEIAME 421

Query: 512 W-LSY--TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           + LS+  + +E     K    I+  +  +V+E+ ++  +++   + ++   +   ++  +
Sbjct: 422 YGLSHLQSHEEFFGKGKKEKVINPFTKKEVEEYYMKVLDIVDSSYDIVMTAIRDSEMTKL 481

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           +E ++ P+I V+S ME  G+ ID+  L+    E ++++L LE  IY+L+GE+FN++SPKQ
Sbjct: 482 FEDVEIPLITVLSDMEYIGVAIDKKELENQKIEFAQHILRLESEIYELAGEEFNINSPKQ 541

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG ILF KL  P   KTKTG + T A  LE++    + II  I+ +RQ +K++STY + L
Sbjct: 542 LGVILFEKLNLPPVKKTKTG-YSTDAAVLEEL-SDMHDIIGKIISYRQYTKLQSTYVEGL 599

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
            N IN  T+R+H+ ++     TGR++S EPNLQNIP++ ++G+ +R+AFI+     L+ +
Sbjct: 600 LNIINPNTERIHSSFNQTIAATGRISSTEPNLQNIPVRLEIGRNLRKAFIARQGCVLVDS 659

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR+LAHI+    L Q F    DIH   A+E+FGV+I +V+ + R  AK +NF I
Sbjct: 660 DYSQIELRVLAHISDEEALIQAFSKDADIHTQTASEVFGVDISEVTKEQRGAAKAVNFGI 719

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS F L+  L I + +A  YIK Y  R+  I +Y++    F  ++GYV TI GRR  
Sbjct: 720 VYGISDFGLSNNLGITKKKAGQYIKTYLDRYKNIEKYMQDVVAFGEEHGYVTTILGRRRS 779

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             ++      I+N+ +R A+N PIQGSAADI + AM+ V   L+   L +K++LQ+HDEL
Sbjct: 780 IPQLKQKNIMIKNLGKRLAMNTPIQGSAADIIKIAMVRVSNRLKRENLKSKLILQVHDEL 839

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + E   +E      ++   M KA     +++V LKV+I V N+W
Sbjct: 840 IIEATADEQDYIKALLQEEMSKAY----DMKVELKVDINVGNSW 879



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 14/301 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L ++DG+S I RAFYA P L+ K +G+  NAI GF N+L+K++     E   +H  V
Sbjct: 2   EKRLIIIDGNSLINRAFYAVPPLTDK-NGMHTNAIYGFANILFKIIS----EYSPTHMGV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+++Y DYK  R  +PE L  QL  ++     F I  +E+ G+EADDII T
Sbjct: 57  AFDLKAPTFRHKMYADYKGTRKGMPEELAEQLAPLKEMLGYFNITKMELAGYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +   EKE     II+ D+D  QL S    +  T K     E +D + ++  +GI P + 
Sbjct: 117 VSKHFEKEDIETLIITGDRDSFQLASDKIKILFTKKGVSELEIVDKQVMMNNYGITPTQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237
           + L+AL GD+ DNI G+ GIG KT   L++EY N+EN+  +   IK   K + EN     
Sbjct: 177 IDLKALMGDTSDNIKGVAGIGEKTGLKLIKEYKNIENLYEHIDEIKGSTKTKLEND---K 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E+A LS++L  +  ++P+ I  +  +L+D +  +L  F        L+ ++    + D  
Sbjct: 234 ESAYLSKQLATININIPVEIESDEFLLKDFDNYKLNEFFIEHNMMSLVKKLKNFSNSDEQ 293

Query: 298 N 298
           N
Sbjct: 294 N 294


>gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
 gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
          Length = 886

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/563 (36%), Positives = 334/563 (59%), Gaps = 18/563 (3%)

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
           D     + I + L+    Q     + L  E    ++ +  +    K G+++    L LH 
Sbjct: 333 DNPHHADVIGLALATEERQYFLPFDVLKSEEAEPVRAWLADSEIPKRGYDLHRIDLALHW 392

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE---ILKSRKSSIP-IDK 532
            GI+  G   D+ L +Y+LD   S+  ++ +A K+ L+Y + +     K  K  +P +DK
Sbjct: 393 QGIAFAGAAFDVHLAAYLLDPTESNQTLSGLASKYGLAYLQADEDVFGKGAKYKVPDVDK 452

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +S     EH       + +L  +   +L   ++L ++  L+ P+  +++ ME  GI ++ 
Sbjct: 453 LS-----EHMARKCLAVSELVPIQEKELAANEMLPLFHDLEMPLSRILADMEKQGIAVNA 507

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + LK++  E    +  L + IY+++G +FNL+SPKQLG+ILF KL+ P   KTKTG + T
Sbjct: 508 EDLKELGREFEGQIAKLVQEIYEIAGTEFNLNSPKQLGEILFVKLELPVIKKTKTG-YST 566

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ LE++    + I++ IL++R L+K++STY + L   I+  T +VHT+Y      TGR
Sbjct: 567 DAEVLEKL-APYHDIVRLILQYRTLAKLQSTYVEGLLKEISSVTGKVHTYYRQTIAATGR 625

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIPI+ + G+K+R+ F+ S P   +++ADYSQIELR+LAHI+    L + F
Sbjct: 626 LSSQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAF 685

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            + +DIH   A ++FGV +++V   MRR AK +NF I+YGIS + L+  L I R EAA +
Sbjct: 686 VHDMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAAAF 745

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I +YF  F G+  Y++      +Q+GYV+T+  RR +  EIN+   ++R+  ER A+N P
Sbjct: 746 IDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTP 805

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AM+ + K+L + +L ++MLLQ+HDELVFEVPE+E+    +++   M +A
Sbjct: 806 IQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVPDVMSQA 865

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               + L VPLK  +    NW E
Sbjct: 866 ----LKLSVPLKSEVSYGENWYE 884



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/320 (35%), Positives = 179/320 (55%), Gaps = 16/320 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG++ IYRAF+A P L+    G   NA+ GF  ML +L++  +     +H  V 
Sbjct: 2   DKLILIDGNNIIYRAFFAMPPLTNA-SGQQTNAVYGFTTMLLRLIEEHK----PTHMMVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  + +YK  R K P  L  Q PL++   +  G+   EI G+EADDII T 
Sbjct: 57  FDAGKETFRHADFQEYKGGRQKTPPELSGQFPLLKELLKGLGVSQFEIGGYEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
           T  A++ G  V ++S DKD++QL S  T +   V++   +IE+     + +++ + P+++
Sbjct: 117 TRQADEAGRKVMVVSGDKDMLQLASEHTTIA-MVRKGVTEIEYYGPEQIKERYNLTPDQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD+ DNIPG+PG+G KTA  LL E+G++E ++     +K  K +E I E+A++
Sbjct: 176 IDLKGLMGDASDNIPGVPGVGEKTALKLLHEFGSVEAVVSRTDELK-GKMKEKIEEHADS 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDA 296
           A LS+KL  +  +VP+   L+ +     N       L  LEF  LI R+    +    DA
Sbjct: 235 AILSKKLATIFREVPLEQSLDEMAFTGLNEETAGPALAKLEFKSLIERLNLSTSGAAGDA 294

Query: 297 ANIEP-VVLDINTTENKGIA 315
           A  +P   +D+   +  GIA
Sbjct: 295 AESKPEAKIDVTLVDATGIA 314


>gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
          Length = 878

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/489 (41%), Positives = 296/489 (60%), Gaps = 32/489 (6%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           +D+ L  YV D G SS+ +  ++++ L                        V     EN 
Sbjct: 419 DDVALAGYVADPGHSSYSLEDLSRRNLP----------------------GVLATPCEN- 455

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
             +LQL   LR  L  ++ L +YE  + P+  V++QME  GI  D++LL Q++ ++   +
Sbjct: 456 --LLQLASKLRSLLAEQQQLKLYEEFELPLAPVLAQMEFAGITPDKELLLQLNEDMGHRI 513

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             LE    + +GE+FNL SPKQLG ILF +L+ P   KTKTG + T A+ LE +  G +P
Sbjct: 514 AKLEALAQEQAGEEFNLKSPKQLGVILFERLQLPVIKKTKTG-YSTDAKVLEALE-GKHP 571

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +I  ILE R+L+K++STY + L   IN +T R+HT +    T+TGRL+S +PNLQNIP +
Sbjct: 572 LIATILEHRKLAKLQSTYLEGLQPLINPKTGRIHTHFQQTVTVTGRLSSTDPNLQNIPAR 631

Query: 727 TDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           T+  ++IRR F+      L+ S DYSQ+ELRILA IA+   L + F +  DIH   AAE+
Sbjct: 632 TEESRQIRRIFVPGAGYDLLMSCDYSQVELRILACIAQDELLLEAFRHGQDIHARTAAEV 691

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FGV +++V+PQMR  AK +NF I+YGIS F LA QL + R EAA YI  YF R+ G+ +Y
Sbjct: 692 FGVPLDEVTPQMRSRAKAVNFGIVYGISDFGLAKQLDVGRKEAAGYIASYFERYTGVKKY 751

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +E      R+ GYV T+ GRR +  EI S   ++R+  ER AIN PIQG+AADI ++AMI
Sbjct: 752 MEDIVAEAREQGYVSTLMGRRRYLPEIRSSNFNLRSFAERTAINTPIQGTAADIMKKAMI 811

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +V + L+  +  +++LLQ+HDELV EV E+E    +Q++  +ME A     +L +PL  +
Sbjct: 812 AVQRELDKAQCKSRILLQVHDELVLEVTEDEKEQVAQLVRTAMEGAA----SLDIPLLAD 867

Query: 966 IKVSNNWQE 974
           +    +W E
Sbjct: 868 VNCGRDWAE 876



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 159/291 (54%), Gaps = 14/291 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +   ++DGSS I+RAF+A P L+ +  G+   A+ G CNML KLL   +      + AV 
Sbjct: 16  DKFLVIDGSSLIHRAFFALPPLTTRQ-GIHTGAVYGLCNMLLKLLDEVKPR----YMAVA 70

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+++Y +YKA R   P  L  Q PL     +  GI  +E+  +EADDII T+
Sbjct: 71  FDKSRKTFRSKLYAEYKAQRKPTPSELSEQFPLAMKVLECMGIRTLELDDYEADDIIGTF 130

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI------EHVIKKWGIPPEK 178
              A  E   V I++ D+D +QL+   T ++ T K    DI      E      G+ P++
Sbjct: 131 AVQAPPE-VDVIIVTGDRDELQLIDKRTKVFYT-KRGISDIQVFDEAEFAANYEGLQPKQ 188

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+ L GD+ DNIPG+PG+G KTA  L++EYGN+E +L N  ++  K  +  + +  E
Sbjct: 189 LIELKGLMGDTSDNIPGVPGVGPKTAMKLIKEYGNVETVLENIEKVSGKSLKTKLTDNKE 248

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +A LS++L  + T+ P+   ++   L+        + ++ LEF  +  R A
Sbjct: 249 SALLSKQLATICTEAPVDTAVQTYELQPIK-EEARTLMQDLEFRNMYERFA 298


>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
 gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
          Length = 878

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 433 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 478

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 479 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 537

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 538 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 595

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 596 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 655

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 656 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 715

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 716 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 775

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+
Sbjct: 776 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 835

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 836 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 874



 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 11/295 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H
Sbjct: 1   MRLKKKLVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ 
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVREKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +E + +
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + E A LS+KL  +R D P+ + L+ ++ +  +  ++++  K L F   + ++ +
Sbjct: 235 HREMALLSKKLAAIRRDAPVELSLDDIVYQGEDREKVVALFKELGFQSFLEKMES 289


>gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
 gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
          Length = 888

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/528 (40%), Positives = 320/528 (60%), Gaps = 18/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   +++   K   N K   + LHR GI +     D++L SY+L++  +S+D+  +AQ+
Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHRLGIPLENINFDLLLASYLLNTNDNSNDLGQVAQE 425

Query: 512 WLSY----TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
              Y    T +E+  K  K ++P D   D     H    +  I QL   L  KL   K  
Sbjct: 426 H-GYDDVRTDEEVYGKGAKRAVPDD---DETFFSHLATKARAIEQLRKDLFAKLDENKQT 481

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +Y  ++ P+  V+++MEI G+ +D   LK + +++++ L  +E  IY  +GE+FN++S 
Sbjct: 482 PLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEFNINST 541

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK P   KTKTG   +TA D+ +     +PI++ ILE+RQ++K++STY  
Sbjct: 542 KQLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADKSPIVEQILEYRQIAKLQSTYIT 599

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            L   I+   Q++HT Y    T TGRL+S++PNLQNIP++   G+ IR+AF+ S    ++
Sbjct: 600 GLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQI 659

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTI 804
            S+DYSQ+ELR+LAHI     L + F+N  DIH   A  IF +  + ++   MRR AK +
Sbjct: 660 FSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAV 719

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + LA ++ + R+EA ++I+ YFH FPG+ +YI  T  F ++NGYVETI  
Sbjct: 720 NFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITH 779

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I++   + R+  ER A+N PIQGSAADI + AMI +   LE   L  KM+LQI
Sbjct: 780 RRRYLPDIHAKSFNKRSFAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMILQI 839

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDELVFE P+EEI   S+++   M+ A    + L VPLKV+ K  + W
Sbjct: 840 HDELVFEAPKEEIPVLSELVPKVMDSA----VKLDVPLKVDSKYGDTW 883



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 168/314 (53%), Gaps = 13/314 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S ++RAF+A      K    DGL   AI GF  ML  +LQN + ++      V
Sbjct: 5   LLLIDGNSIVFRAFFAMHNQMDKFTNKDGLHTAAIYGFKLMLDHVLQNFKPDAAL----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K P  L  Q+P VR   +  G+ + E+  +EADDII T
Sbjct: 61  AFDAGKVTFRTKMYDDYKGGRNKTPNELTEQIPYVRELIKDSGLHSYELANYEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179
               A+  G+   I++ D+DL QL S  T +  T K     E     HV +K GI P ++
Sbjct: 121 LAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTPAHVEEKLGITPRQI 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+  IG KTA  L++++G++E +  +   +K+ K +E+++E  E 
Sbjct: 181 IDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYDHIDDLKKSKMKEHLIEDEEV 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--VATTYDCDAA 297
           AR  + L  +  D PI I L+ L  +      LI F K + F   + +  V  T + D A
Sbjct: 241 ARQCKTLATILQDAPIKIGLDDLQYQGPQTDDLIKFYKEMGFKSFLKKMDVDGTGEEDEA 300

Query: 298 NIEPVVLDINTTEN 311
            I P+   + T +N
Sbjct: 301 EIAPIDYTVLTKDN 314


>gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
 gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
          Length = 875

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/536 (40%), Positives = 327/536 (61%), Gaps = 32/536 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+++ E+   +K   + K  +  L R GI + G + D++L SY+ +   S  DIA++A++
Sbjct: 356 LRRWLEDATKIKYMSDSKAAQASLKRAGIQLAGVDFDLLLASYINNPALSGDDIATLARE 415

Query: 512 WLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              Y  +       K  K +IP       Q+ +H    S     +W L +PKL  E LL 
Sbjct: 416 LGYYDVQADEAVYGKGAKRAIP----DLDQLAQHV---SRKAFAVWSL-QPKL--EALLK 465

Query: 568 ------VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                 +Y+ L+ P+  ++ +ME  GI +++  L+++  E++  L+ +E+ IY  +GE F
Sbjct: 466 DNEQFDLYKNLELPLAGILGEMESEGITVNRATLEKMGQELNDKLVVIEQEIYAEAGETF 525

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++SPKQLG ILF KL  P   KTKTG + T A  LE++   ++ II++IL +RQL K++
Sbjct: 526 NINSPKQLGVILFDKLGLPVIKKTKTG-YSTAADVLEKLQS-EHAIIEHILLYRQLGKLQ 583

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY + L   I++   +VHT +  A T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P
Sbjct: 584 STYIEGLLKEIHESNSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFV--P 641

Query: 742 TKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           +K+   L SADYSQIELR+LAH+++   L + F   +D+H   A ++F V+ ++V   MR
Sbjct: 642 SKEDWILFSADYSQIELRVLAHMSEDQNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMR 701

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R AK +NF I+YGIS + L+  L I R EAA++I++YF  FPG+ +Y++      + NGY
Sbjct: 702 RAAKAVNFGIVYGISDYGLSQNLDITRKEAANFIEKYFASFPGVKQYMDDIVQNAKFNGY 761

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V TI  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI +   L+  K+  
Sbjct: 762 VTTILNRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMDARLKKEKMQA 821

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K+LLQ+HDEL+FE P+EEI    +I+   ME A    I L VPLKV+    + W E
Sbjct: 822 KLLLQVHDELIFEAPKEEIALLEKIVPEVMENA----IELAVPLKVDFNHGSTWYE 873



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/294 (38%), Positives = 164/294 (55%), Gaps = 16/294 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML ++L+  +   I   
Sbjct: 1   MTKEK-LLLLDGNSLAYRAFFALPLLTNDS-GIHTNAVYGFTTMLQRILEEEQPTKIL-- 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q P +R    A+GI   E + +EADDI
Sbjct: 57  --VAFDAGKTTFRHETFTEYKGGRQKTPPELSEQFPYLRKLIDAYGIKRYEQELYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A  +   V I+S D+DL QL +    +Y T K     EK     + +K+G+ P
Sbjct: 115 IGTLAKEASSQDMDVIIVSGDRDLTQLATEQVTVYITKKGITEIEKNTPAFIAEKYGLTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  LL+E+G++E +      +K  K +E ++  
Sbjct: 175 LQIIDMKGLMGDSSDNIPGVPGVGEKTAVKLLKEHGSVEALYEAMDTLKASKMKEKLVAN 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR---LISFLKALEFTKLINR 287
            E A +S+KL  + TD PITI L  L     NGP+   LI+  + L F  L+++
Sbjct: 235 EEQAIMSKKLATIYTDAPITISLADLA---YNGPKEDELINVWRELGFKSLLDK 285


>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
 gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
          Length = 949

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/515 (38%), Positives = 319/515 (61%), Gaps = 9/515 (1%)

Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+GHN+KYD L+L ++G+ + G   D M+  Y++ +   +H++  +A+  L+Y    I  
Sbjct: 438 KLGHNLKYDLLLLKQHGVEVGGTLFDTMVAHYLV-APEENHNLDDVARSVLNYKMVPIAD 496

Query: 523 SRKSSIPIDKISDSQVQ---EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
                   D + +  V+    +A E++++  +L   L  +L    +L V   ++ P++ V
Sbjct: 497 LIGDETDRDSMREVDVETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHV 556

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ ME TGI++D D+L ++ A + + L  +EE +++L+GE+FN++S +QLG+ILF KL  
Sbjct: 557 LATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAGEEFNINSTQQLGEILFEKLDL 616

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P  +KT TG+  T    L++++  ++ I   +L+WR   K+KSTY DSL   ++  T R+
Sbjct: 617 PVVSKTPTGKPSTKESVLQELST-EHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRL 675

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S +PNLQNIPI+T++G++IRRAF+      L+SADY+QIELRILA
Sbjct: 676 HTSFNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILA 735

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    +   F+   DIH   AA ++G++ E V+P+ R  AK +N+ I YGISP+ LA 
Sbjct: 736 AMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQ 795

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++R+P  EA D IK+Y   +PG+ + + +     +  GY ET+ GRR +  +I+S  S+ 
Sbjct: 796 RMRMPVDEAQDIIKQYRKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNA 855

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER A+N PIQG+ AD+ + AM  +H  L     AT+MLLQ+HDELVFEVP +E+  
Sbjct: 856 RSAAERVAVNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPPDELDA 915

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           A  +I   M  A LP  +  VP+ V++   +NW E
Sbjct: 916 AQTMIDDEMRDA-LPLDD--VPVTVDMDTGDNWLE 947



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 168/296 (56%), Gaps = 20/296 (6%)

Query: 4   ENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L+L+D  S  YRA Y   + PL++ K  G   +A  GF N L KL+++   E    H
Sbjct: 33  DNALYLIDAMSLAYRAHYIFISRPLINSK--GQNTSAAYGFTNSLLKLIEDHDIE----H 86

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+FD     TFR E+Y DYKANR   PE LL  +P ++   +   IP +E+ G EADD
Sbjct: 87  AAVVFDEGEEDTFRKEMYDDYKANRDPPPEELLENIPYIKEIVEGLDIPVLEVPGVEADD 146

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK-------KW 172
           +I      AE +   V I+S DKD  QL+S    +Y   K  K D +  IK       ++
Sbjct: 147 VIGALAKQAEADDADVVIVSPDKDFKQLLSDKVSIY---KPAKGDQDFEIKTRDTFRDEY 203

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P + V + AL GDS DN+PG+ GIG KTA  LL+EY ++EN++ +A  +  K+ RE 
Sbjct: 204 GLDPAQFVDMLALMGDSSDNVPGVYGIGEKTAQKLLREYHSVENLIDHADDLSGKRAREG 263

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + E+AE ARLS++LV +RT++ + +    L   + +  +L +  + LEF    +R+
Sbjct: 264 MQEHAEEARLSKRLVRIRTELDVGLDWHELQRRELDEEKLTAVFQELEFDSFGDRL 319


>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 875

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/493 (43%), Positives = 300/493 (60%), Gaps = 35/493 (7%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ED+ LM Y L +G S  ++   A K                       ++ ++   IE++
Sbjct: 411 EDLELMQYALSAGLSQKNLFEEALK-----------------------ETLIENIIIESA 447

Query: 547 NVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            +++  ++ L  + I+E    K   +Y  +D P+  ++ +ME  GI++D + LKQ+SAE 
Sbjct: 448 KIVIN-FISLYKQTILELKDNKAFRLYSDIDLPICFILDKMEKVGIKVDANYLKQLSAEF 506

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQIN 661
              +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G    K   + T A+ LE+++
Sbjct: 507 GAEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKVSAKASSYSTGAEILEKLS 566

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   +L WRQL+K+K+TY DSLP  I+  T+RVHT +   ST TGRL+S EPNLQ
Sbjct: 567 EHGYNIANLLLRWRQLTKLKNTYTDSLPKQIDNITKRVHTTFLQTSTTTGRLSSQEPNLQ 626

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           N+PI++  G KIR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N  DIH   
Sbjct: 627 NVPIRSSEGNKIRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQT 686

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A +IF +   +++ + RR AK INF IIYGIS F LA QL +   +A++YIK+YF  + G
Sbjct: 687 ACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGKASEYIKKYFAEYKG 746

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG+ ADI +
Sbjct: 747 VQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIK 804

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI++ + +E  KL T+++LQIHDEL+FE P EE+     II   ME +     N+ VP
Sbjct: 805 IAMINLDQEIEKRKLKTRLVLQIHDELLFEAPVEEVEIIIPIIKKIMENST----NIDVP 860

Query: 962 LKVNIKVSNNWQE 974
           +   I+  NNW E
Sbjct: 861 IITEIRAGNNWME 873



 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/321 (40%), Positives = 185/321 (57%), Gaps = 8/321 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+YA  PL S K +  PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLTSPKDE--PVGALYGFTSMLLKLLSDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR+ IYP+YKANRP  PE L+ QLPLVR    +   P +E  G+EADD
Sbjct: 55  HVAVVFDSGGENFRHHIYPEYKANRPPPPEDLIVQLPLVRDVASSLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL+S    +YD +K + I  E V+KK+G   +K+
Sbjct: 115 IIATFATKTVMLGEEVIIISSDKDLLQLMSENIKIYDPLKGKYITEEDVVKKFGTTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  +I   K+RE +    E 
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQISSIKQRETLQNSKEA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S +L  L ++V +   L +L     N  +L  FL+   F  L  R    +D    N 
Sbjct: 235 ALISWQLTGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFKSLYKRAENLFDI-KIND 293

Query: 300 EPVVLDINTTENKGIAIETEI 320
              + D   TE K I+  +E+
Sbjct: 294 HKEIADNKVTEAKEISNASEL 314


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/508 (40%), Positives = 314/508 (61%), Gaps = 24/508 (4%)

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-------KSRKS 526
           L  H + I    F D+ L SY+L++  S+  + SIA +   Y +  +L       K  K 
Sbjct: 386 LAWHDFAIKGISF-DVYLASYLLNAAESNPTLDSIAAQ---YAQTRVLSDEEVYGKGAKR 441

Query: 527 SIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +P +D +S     EH    +  I Q   +LR +L   ++  +   L+ P+  V++ ME 
Sbjct: 442 LVPEMDVLS-----EHVAHKAAAIWQSVPVLREQLAENEMEKLLGELEAPLSMVLALMEK 496

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G++++ + L Q+  ++ K L  L + IY+L+G  FN++SPKQLG+ILF +L  P   KT
Sbjct: 497 QGVKVNSERLVQMGEDLDKKLAGLTDQIYELAGGAFNINSPKQLGEILFDRLSLPVLKKT 556

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG   T+A  LE++    +PII  IL +RQL K++STY + L   I+ +T +VHT Y+ 
Sbjct: 557 KTGP-STSADVLEKL-APYHPIIDAILTFRQLGKLRSTYIEGLTKEIHTKTSKVHTLYNQ 614

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKI 764
           A+T TGRL+S +PNLQNIPI+ + G+KIR AFI S     +++ADYSQIELRILAHI++ 
Sbjct: 615 ATTATGRLSSTDPNLQNIPIRMEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISQD 674

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F+  +DIH   A ++FGV+ E+V+  MRR AK +NF I+YGIS + L+  L I 
Sbjct: 675 ENLIDAFQKGMDIHTRTAMDVFGVSEEEVTSLMRRQAKAVNFGIVYGISDYGLSQNLNIT 734

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA D+I+RYF  F G+  ++++     + +G+V T+  RR +  +I S   ++R+  E
Sbjct: 735 RKEAGDFIERYFDVFSGVKRWMDEIVQQAKADGHVTTLLNRRRYLPDIRSSNFNLRSFAE 794

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N PIQG+AAD+ + AMI + ++LE+  LA++MLLQ+HDELVFEVP+ E+    +++
Sbjct: 795 RTAMNTPIQGTAADVIKLAMIRMQEALEEKGLASRMLLQVHDELVFEVPDNELEVMRKLV 854

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
              ME A    ++L VPLKV++     W
Sbjct: 855 PEVMESA----LSLDVPLKVDVSDGRTW 878



 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 178/316 (56%), Gaps = 12/316 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +H  L+DG+S   RAFYA PLLS    GL  NA+ GF  ML K+L+  +     +H  V 
Sbjct: 2   SHFVLIDGNSVANRAFYALPLLSTSA-GLHTNAVLGFTTMLLKVLEEMK----PTHIMVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   V FR+  Y +YK  R K P  L  Q PL+R    AF I   E++G+EADDII T 
Sbjct: 57  FDAGKVVFRHSEYAEYKGGRSKTPPELSEQFPLIRELLDAFSIKRFELEGYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  A+++ +  T+I+ DKD++QLVS    +  T K     E    E + +K+G+ P +++
Sbjct: 117 TKQADEQAWKTTVITGDKDMLQLVSEHVSVALTRKGVSEIEMYTPEEIHEKYGLKPLQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GDS DNIPG+PG+G KTA  LL EYG++E +L N  ++  KK +EN+ E  + A
Sbjct: 177 DLKGLMGDSSDNIPGVPGVGEKTALKLLHEYGSVEQVLENIDKVSGKKLQENLRENVDKA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY---DCDAA 297
            +S+ L  +  + P+ + ++    E  +G  +  F K +EF  L++++           A
Sbjct: 237 NMSKALATILREAPVELDVQETGFEGYDGLPVSEFFKKMEFKSLLSKIKVAQPEGGSGQA 296

Query: 298 NIEPVVLDINTTENKG 313
           + +P   ++ + ENK 
Sbjct: 297 DAKPFSFEMISEENKA 312


>gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
           In Complex With Fragment Dna Polymerase I From Bacillus
           Stearothermophilus
          Length = 580

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   K+KTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKSKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
          Length = 876

 Score =  370 bits (949), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 431 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 476

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 477 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 535

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 536 VILFEKLQLPILKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 593

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 594 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 653

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 654 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 713

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 714 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 773

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+
Sbjct: 774 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 833

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+      W
Sbjct: 834 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGPTW 872



 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 118/291 (40%), Positives = 174/291 (59%), Gaps = 11/291 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H  V 
Sbjct: 3   NKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTHMLVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDII T 
Sbjct: 58  FDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKM 179
              AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ PE++
Sbjct: 118 AARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVREKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +E + ++ E 
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREM 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           A LS+KL  +R D P+ + L+ +  +  +  ++++  K L F   + ++ +
Sbjct: 237 ALLSKKLAAIRRDAPVELSLDDIAYQGEDREKVVALFKELGFQSFLEKMES 287


>gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
 gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
          Length = 886

 Score =  369 bits (948), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 212/531 (39%), Positives = 330/531 (62%), Gaps = 26/531 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   EN    K   ++K   + LHR  + + G   D++L SY++++ ++S+D+  IA  
Sbjct: 367 LKDILENRKIQKDVFDLKRMTVGLHRLDVIVEGLNYDMLLASYLVNNEKNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +K +IP DK    +  +H      VI +L    +P+L+ +   H
Sbjct: 427 YDEYSIKTDLEVYGKGKKQAIPEDK----EFFKHLAAKVCVIEKL----KPELLKQLKEH 478

Query: 568 ----VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
               ++E ++ P   V+++MEI GI+++   L ++  E +  L  LE+ IY  +GE+FNL
Sbjct: 479 EQDDLFETIEIPTARVLAKMEINGIKVEASTLIELQNEFAVKLKELEDKIYKQAGEEFNL 538

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+ST
Sbjct: 539 NSPKQLGHILFEKLNLPVLKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQST 596

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPT 742
           Y   L + I +R  RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P 
Sbjct: 597 YVKGLLDVI-QRDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPD 655

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHA 801
             + S DYSQ+ELR+LAH++    + + F+   DIH   A  IF ++  ++V+P MRRHA
Sbjct: 656 GYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHA 715

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF I+YGIS + L+  L I R  A ++I  YF ++P I +Y++K     R+ GY ET
Sbjct: 716 KAVNFGIVYGISDYGLSKNLGISRKRAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAET 775

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           I  RR +  +I++ K ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM+
Sbjct: 776 IMHRRRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMV 835

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +Q+HDEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 836 IQVHDELIFDVPKDELETIKKIVPEIMQSA----VKLDVPLIADSGWGHNW 882



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/312 (37%), Positives = 172/312 (55%), Gaps = 20/312 (6%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R    DGL  NAI  F NML  +L    K+   ++  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIL----KQVDPTNILV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR  +Y DYK  R K P  LL Q+P++R      GI + E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTAMYKDYKGGRQKTPSELLEQMPVIREMLTDLGITSYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179
            + + E  G+ VT+++ D+DL QL S  T +  T       E    EH+ +  GI P + 
Sbjct: 122 LSKMGEDAGYEVTVVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGITPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+ GIG KTA+ L+Q+YG++EN+  +   +K+ KR+E ++   + 
Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQKYGSVENLYDHIDDLKKSKRKERLIRDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A L++KL  +  + P+T+ LE  I +D N  +L    + L F K +  +         N+
Sbjct: 242 AFLAKKLAAIDRESPVTVTLEDTIKKDPNYEKLRDLYERLGFRKFLAEL---------NL 292

Query: 300 EPVVLDINTTEN 311
           E    D   TEN
Sbjct: 293 ETAGEDSGDTEN 304


>gi|332981757|ref|YP_004463198.1| DNA polymerase I [Mahella australiensis 50-1 BON]
 gi|332699435|gb|AEE96376.1| DNA polymerase I [Mahella australiensis 50-1 BON]
          Length = 850

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 186/499 (37%), Positives = 317/499 (63%), Gaps = 31/499 (6%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           +++  I+++G + D M+ +Y+LD  +S++DI  + +++L                     
Sbjct: 377 MNKSHINVKGIDFDAMIAAYLLDPSQSNYDIKRLVKQYL--------------------- 415

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++ + A  ++  + +L  ++ P++   ++  ++  ++ P+  V++ MEI G  +D  +
Sbjct: 416 --EIDDDAASHAGYLWRLMNIMLPQIKENEMNALFYDIEMPLTRVLADMEINGFTVDVQM 473

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK+++ +  + +  L + IY L+GE+FN++SPKQLG ILF KLK P G KTKTG + T  
Sbjct: 474 LKELADDFERMIDGLTKEIYALAGEEFNINSPKQLGAILFEKLKLPVGKKTKTG-YSTDI 532

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+Q+    + I+  I+++RQL+K+KSTY D L N  +  T ++H+ ++   T+TGR++
Sbjct: 533 EVLKQLQL-QHDIVPKIIDYRQLTKLKSTYIDGLMNMADPITHKIHSKFNQTVTVTGRIS 591

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP+KT+LG +IR+AF+ S     L+ ADYSQIELR+LAH+++   +   F  
Sbjct: 592 STEPNLQNIPVKTELGHQIRKAFVPSSSDYLLLDADYSQIELRVLAHMSQDQNMIDAFLK 651

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A+E+FG+ +E+V+P MR  AK +NF I+YGIS F LA  + I RSEA  YI+
Sbjct: 652 GQDIHARTASEVFGIPLEQVTPLMRSRAKAVNFGIVYGISDFGLARNIGISRSEAKQYIE 711

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF R+ G+  ++++T  F +++GYV T+F RR +  E+ S   ++R+  ERAA+N PIQ
Sbjct: 712 QYFARYNGVRRFMDETIQFAKKHGYVTTMFKRRRYLPELASSNRTVRSFGERAAMNTPIQ 771

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AM+ ++ +L++++  +K++LQ+HDEL+ EV  +E+     ++   ME    
Sbjct: 772 GTAADIIKKAMVDIYNALKENEYRSKLILQVHDELIIEVHRDEVDEIRDLVKDKMEGV-- 829

Query: 954 PKINLRVPLKVNIKVSNNW 972
             + + VPL  +I V  NW
Sbjct: 830 --VKMDVPLVADIHVGENW 846



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 182/309 (58%), Gaps = 15/309 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG+S + RAFYA P+L+   +G   N + GF  ML+K+++  +     +H AV 
Sbjct: 3   DKIMLIDGNSLLNRAFYALPMLTNA-EGQYTNGVYGFLTMLYKVMEQEK----PTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+E Y  YKA R  +P+ +  QLP+++    A  I   E+ G+EADDI+ T 
Sbjct: 58  FDRKAPTFRHEQYDGYKAKRTGMPDEMASQLPVLKEVLTAMNIRIFEMDGYEADDILGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +A ++G  V +++ D+D +QLV P   +  T +     E  D + + +++GI PE+++
Sbjct: 118 ANMAHQKGMEVVLVTGDRDALQLVKPDVKVIITKRGITDVEVCDEQAITQRYGIKPEQLI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+PGIG KTA  L++++G+LE++L +   +   K ++ + EY E A
Sbjct: 178 DVKGLMGDASDNIPGVPGIGEKTALRLIKQFGSLESVLEHIDDVSGDKLKKLLTEYREQA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVATTYDCDAA 297
            +S++L  ++  VPI   L+      C GP   +L    + L+F  L++++    D + A
Sbjct: 238 IMSKQLGAIQCCVPIDDDLDKC---RCKGPDAVKLKEIYQRLDFKSLLSKIPQNNDEEFA 294

Query: 298 NIEPVVLDI 306
           + +P+  D+
Sbjct: 295 DKDPIGSDV 303


>gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
          Length = 879

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 194/490 (39%), Positives = 307/490 (62%), Gaps = 11/490 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D  L +Y+L+  + S+    +A+ +L+     R E L  R S      +   ++   A  
Sbjct: 396 DAGLGAYLLNPLKESYSYDELARDYLNMLLPNRNE-LTGRMSYAEASMVKSEELARLACM 454

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            +  +   W ++  KL   ++ H+++ ++ P++ V+  ME  GI +D   LK+   +++ 
Sbjct: 455 EAYCVRHAWNVISVKLDEVQMKHLFDDIEMPLVFVLYDMECEGIMVDSKGLKEYGDKLAT 514

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  LE  IY+L+G KFN++SPKQLG +LF  +K PSG KTK+G + T A  LE++   +
Sbjct: 515 RITELENTIYELAGTKFNINSPKQLGTVLFEDMKLPSGKKTKSG-YSTAADVLEKL-APE 572

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            P++  ILE+RQL+K+KSTYAD L  +I     R+H  ++   T TGR++S EPNLQNIP
Sbjct: 573 YPVVAKILEYRQLTKLKSTYADGLAVYI-LEDGRIHGHFNQTITATGRISSTEPNLQNIP 631

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           ++ ++G++IR+ F+  P    + ADYSQIELRILAH+++   L   +  + DIH + A++
Sbjct: 632 VRMEIGRQIRKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITASQ 691

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F V +++V+   R +AK +NF IIYGIS F L+  L I R EA++YI++YF  +P I E
Sbjct: 692 VFHVPLDEVTRTQRSNAKAVNFGIIYGISSFGLSQDLSISRKEASEYIEQYFATYPHIKE 751

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +I+      ++NGY  T+FGRR    E+NS     R   ER A+N+PIQGSAADI + AM
Sbjct: 752 FIDGLVASAKKNGYSTTMFGRRRPVPELNSSNFMQRQFGERIAMNSPIQGSAADIIKIAM 811

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I+V ++L+D+ L +KM+LQ+HDEL+ E  E+E+    QI++ +M  A     +LRVPL+V
Sbjct: 812 INVSRALKDNNLKSKMILQVHDELLIETYEDEVDAVRQILIDNMTNAA----SLRVPLEV 867

Query: 965 NIKVSNNWQE 974
           ++K  ++W E
Sbjct: 868 DVKEGHDWLE 877



 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 166/308 (53%), Gaps = 21/308 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RAFY  P L+   + +  NAI GF N+++K++   + E    H  V FD
Sbjct: 4   LVLIDGHSILNRAFYGVPDLTNAQE-VHTNAIYGFLNIMFKIIDEEKPE----HLIVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++++ +YK  R  +PE L  Q+PL++   +A GI  ++ +G+EADDI+ T   
Sbjct: 59  MSAPTFRHKMFAEYKGTRKPMPEELRQQVPLIKEVLEAMGIEIVQKEGYEADDILGTIAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTT--CLYDTVKEEKIDIEHVIKKWGIPPE 177
            +EK G  V+I+S D+D++Q+ +       P T   + +       D+E +   +G+ P 
Sbjct: 119 HSEKNGLDVSIVSGDRDILQIATEHIMIRIPKTKKGVTEIENYNACDVEAL---YGVTPA 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GDS DNIPG PGIG KTA  ++Q++G++EN   +   +   + R ++ +  
Sbjct: 176 EFIDMKALMGDSSDNIPGAPGIGEKTAGAIIQKFGSVENAYNHIDEVTPNRARNSLADNY 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +   LS+KL  +  D P+   ++   L++    +     K   F  L+ +    +D    
Sbjct: 236 DQVLLSKKLATIDIDAPVEYDVDSATLDNMFSDKAYEMFKRYNFKSLLKK----FDAATT 291

Query: 298 NIEPVVLD 305
             EP + D
Sbjct: 292 TREPEIFD 299


>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
 gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
          Length = 880

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 207/528 (39%), Positives = 318/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
            K + E+    KI  + K  K+ L R  I+M+G   D +L SY+L+   ++HDI +IA +
Sbjct: 361 FKAWAEDPQKHKIVFDAKRTKVALLRNNINMQGIIFDSLLASYLLNPAENNHDIPAIANR 420

Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
                + +  +   K  K  +P   +    + EH +  + ++  L+  +  +L   +   
Sbjct: 421 KSRSDVQFDEEVFGKGAKQKVPEADV----LNEHVVRKTQLLFDLYPEMEEELGNNEQYE 476

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           + + L+ P+  +++++E  G+Q+D D LK +  ++ + L +LE+ +Y+L+GE FNL+SPK
Sbjct: 477 LLKELEMPLALILAEVEHYGVQVDIDKLKDMGEDLKERLSTLEQEVYELAGETFNLNSPK 536

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T A  LEQ+   ++ II  +L +RQL K++STY + 
Sbjct: 537 QLGPILFEKLGLPVIKKTKTG-YSTAADVLEQLE-NEHDIIPKLLMYRQLGKLQSTYIEG 594

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   + K T R+HT Y+ A T TGRL+S+EPNLQNIPI+ + G+KIR+AF+  P+K    
Sbjct: 595 LLKVVRKDTSRIHTRYNQALTQTGRLSSIEPNLQNIPIRLEEGRKIRQAFV--PSKDNWI 652

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F+   DIH   A ++F V  ++V+  MRR AK +
Sbjct: 653 MFAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAV 712

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R EA  +I+RYF+ +PG+  Y+++     +  G+V TI  
Sbjct: 713 NFGIVYGISDYGLSQNLGITRKEAKKFIERYFNSYPGVKTYMDEIVQEAKHKGFVSTIMK 772

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI +   L++  L   +LLQ+
Sbjct: 773 RRRYLPDITSRNFNMRSFAERTAMNTPIQGSAADIIKKAMIDLDHRLKEENLQANVLLQV 832

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+ E PE EI    +I+   ME      + L VPLKV+     +W
Sbjct: 833 HDELILEAPENEIDKLKEIVPDVMENT----VELDVPLKVDYSFGKSW 876



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 11/313 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S IYRAF+A PLL+    G+  N + GF  ML ++L+    E   +H  V 
Sbjct: 3   NKLVLIDGNSIIYRAFFALPLLNNDK-GVYTNGVYGFTTMLLRILE----EEKPTHMLVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P+++    AF I   ++  +EADDII T 
Sbjct: 58  FDAGKTTFRHSTYKEYKGGRQKTPPELSEQFPVLKELLDAFSIKYYQLDQYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A+K+ + VT+IS DKDL+QLVS    +  T K     EK    ++++K  I P++++
Sbjct: 118 SKQADKKDWEVTVISGDKDLLQLVSEQVTVSVTKKGISDIEKYTPAYMLEKMEITPDQII 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GDS DNIPG+PG+G KTA  LL++Y NLEN+  +   I  KK +EN+  + E A
Sbjct: 178 HLKALMGDSSDNIPGVPGVGEKTATKLLKQYENLENVYEHIDEISGKKLKENLSNHREDA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA--TTYDCDAAN 298
            +S++LV +  + PI I LE+L  +      ++   K L F  L++RV+  T  D +  N
Sbjct: 238 FMSKELVTINRESPIEITLENLPYQGFQTSSVVQIFKDLGFQSLLSRVSEETEDDAEQPN 297

Query: 299 IEPVVLDINTTEN 311
           IE   ++ +  EN
Sbjct: 298 IEMESIEFDVVEN 310


>gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
 gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
          Length = 883

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 212/532 (39%), Positives = 330/532 (62%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+++  K   ++K + + L R  I++    +DIML SY+ DS  ++ DI  +A  
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNARDIGVLANS 423

Query: 512 WL-SYTRK-EIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  SY +  EI+     ++ S+ +D +       H     +V+ +L   + P+L   + +
Sbjct: 424 YQESYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQV 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 834 QIHDELLFDVPSEELDLIKILVPKIMQQAA----QLDVPLIADANWGHNWYE 881



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 4   LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 57  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           + T   +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/562 (35%), Positives = 347/562 (61%), Gaps = 16/562 (2%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           F+ +   +D  V+ +  S G + L +    +IL  ++   E+E   KIG+ +K D + L 
Sbjct: 324 FRTDANILDQDVYMTYLSLGNDKLYRVHGDDILK-IRTILEDEDIEKIGYEMKADYVALK 382

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRS-SHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            YGI +R    DI +  YV+DS  S S+DI SI+ K++  T   ++++L     ++   +
Sbjct: 383 PYGIDLRNMAFDIAIAEYVIDSKTSTSYDIDSISSKYIYKTIMSKEDLLGKGAKALDYRQ 442

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   ++ ++     + I+  +  ++  +  ++L  ++  ++ P+++V+++ME  GI +D+
Sbjct: 443 VDLEKLDQYVSGMLSTIIGSYPKMKKIIDEDQLSMLFYDVEMPLVEVLAEMEYAGICVDR 502

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D+L  ++ +  + +   E+NI++L+G+ FN++SPKQLG ILF KL  P   KTKTG + T
Sbjct: 503 DILSNLAKDFDEIIDKTEKNIHELAGQDFNVNSPKQLGHILFEKLGLPVIKKTKTG-YST 561

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ LE++    + II  I E+R + K+KSTY D +   +N +  R+H+ ++   T TGR
Sbjct: 562 NAEVLEKLR-DKHEIINMITEYRSVVKLKSTYVDGIEALVNAKDGRIHSSFNQTITTTGR 620

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++S +PN+QNIP++TD+G++IR+ FI+  +  L+ ADYSQ+ELR+LAH+++   + + F 
Sbjct: 621 ISSTDPNMQNIPVRTDMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFN 680

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIHR  A+++F V+  +V+P++R  AK +NF IIYG S F LA  L I + +A +YI
Sbjct: 681 SGEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGIIYGKSDFGLAQDLNISQKKAKEYI 740

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF+++  I  +++   +   + GY  TIF RR +  EI S     +N  +RAA+NAPI
Sbjct: 741 ESYFNKYETIKAFMDHIVSEAEEKGYSTTIFNRRRYIPEIKSSNFVEKNRGKRAAMNAPI 800

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM++V+  L++  L ++++LQ+HDEL+ E   +E+T    ++   ME A 
Sbjct: 801 QGSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELIVEATADELTQVEVLLREEMENA- 859

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              +NL V LKV++ +  +W E
Sbjct: 860 ---VNLGVDLKVDLNIGKSWYE 878



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/470 (31%), Positives = 234/470 (49%), Gaps = 64/470 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K+N L L+DG+S I RAF+A P +     GL  NAI GF  ML+K++++       SH +
Sbjct: 2   KKNRLLLIDGNSIINRAFFALPPMDNGQ-GLHTNAIYGFLTMLFKMIKSYE----PSHIS 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD  A TFR++ Y +YKA R K+P  L  QL  ++       I   EI+G+EADDI+ 
Sbjct: 57  VAFDMKAPTFRHKSYTEYKAGRKKMPGELAMQLDPLKDVLDKLNIDREEIEGYEADDILG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T +  AEKEG+ V I++ D+D +QL S  T +  T K     E+ D + V+ ++ + P++
Sbjct: 117 TLSLDAEKEGYEVYIVTGDRDAIQLASDNTRVLITKKGVGEVEEYDAQAVMDRYSLTPDQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEY 236
            + L+ L GD  DNIPGIPGIG KT   LL EY  ++ +L N  ++K  QKK+ E   E 
Sbjct: 177 FIDLKGLMGDKSDNIPGIPGIGEKTGIKLLLEYKTVQGVLDNVDKLKGAQKKKVE---EN 233

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E+A +S+ L  +  +VP+   L+ +   + +   ++   + L+FT LI R+        
Sbjct: 234 MESALMSKDLATIFREVPLDYSLDQMAFGEFSVEEVVKAFQELKFTSLIARLN------- 286

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                   D+   E++   IE         K + F +  DQ    +  Q   K+F     
Sbjct: 287 --------DLTGQEDQAADIEI-------CKLTDFDAFIDQVK--DRGQIFMKVFRTDAN 329

Query: 357 KLSQ--------------YPINNDSYTKI---VNTKDIQQ--WVQKLETIGSASFKIITD 397
            L Q              Y ++ D   KI   +  +DI++  +  K + +    + I   
Sbjct: 330 ILDQDVYMTYLSLGNDKLYRVHGDDILKIRTILEDEDIEKIGYEMKADYVALKPYGIDLR 389

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETI---FIDLSVHTSQDSTGKNT 444
            M AF    IAIA   +D K  TS+ +++I   +I  ++ + +D  GK  
Sbjct: 390 NM-AFD---IAIAEYVIDSKTSTSYDIDSISSKYIYKTIMSKEDLLGKGA 435


>gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
          Length = 921

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/412 (48%), Positives = 266/412 (64%), Gaps = 7/412 (1%)

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           K   +Y  +D P+  ++ +ME  GI++D + LKQ+S E    +L LEE I+ LSG KFN+
Sbjct: 514 KAFRLYSDIDLPICFILDKMEKVGIKVDANYLKQLSTEFGAEILKLEEEIFALSGTKFNI 573

Query: 624 SSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
            S KQLG+ILF K++ P G A  K   + T A+ LE+++     I   +L WRQL+K+K+
Sbjct: 574 GSLKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKN 633

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY DSLP  I+  T RVHT +   ST TGRL+S EPNLQN+PI++  G KIR+AFI+   
Sbjct: 634 TYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEG 693

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            KLISADYSQIELRIL+HIA I  L Q F N  DIH   A +IF +   +++ + RR AK
Sbjct: 694 YKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTNEHRRKAK 753

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            INF IIYGIS F LA QL +   EA++YIK+YF  + G+ EY+E+TK F   NGYV   
Sbjct: 754 AINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVTNF 813

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           FGR+     I+  K  ++   ERAAINAPIQG+ ADI + AMI++ + +E  KL T+++L
Sbjct: 814 FGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKRKLKTRLVL 871

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+FE P +E+     II   ME +     N+ VP+   I+  NNW E
Sbjct: 872 QIHDELLFEAPIDEVEIIIPIIKKIMEYST----NMDVPIITEIRTGNNWME 919



 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/322 (39%), Positives = 188/322 (58%), Gaps = 8/322 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++N L L+DG  F++RA+YA  PL S K  G PV A+ GF +ML KLL + + +    
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR+ IYP+YKANRP  PE L+ QLPLVR        P +E  G+EADD
Sbjct: 55  HVAVVFDSGGKNFRHYIYPEYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT+       G  V IIS+DKDL+QL+S    +YD ++ + I  + V+KK+G   +K+
Sbjct: 115 IIATFATKTAALGENVVIISSDKDLLQLMSENIKIYDPLRGKYITEDDVVKKFGTTSDKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E 
Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S +L+ L ++V +   L +L     N  +L  FL+   F  L  R    +D    + 
Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRAENLFDIKINDH 294

Query: 300 EPVVLDINTTENKGIAIETEID 321
           + +V D   TE K I+ + E++
Sbjct: 295 KDIV-DNKVTEIKEISNKLELE 315


>gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 858

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 217/511 (42%), Positives = 310/511 (60%), Gaps = 35/511 (6%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           LKI HNIK  + +       +   +D+M+MSY LD+G+  H I +I    LS    EI  
Sbjct: 361 LKIIHNIKEIRKIFPAIEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLS-ENAEIF- 418

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           S K+ I I +                       L+ +L  EKLL +YER DKP++ V+  
Sbjct: 419 SAKTLIAIHE----------------------KLKQRLFQEKLLTIYERFDKPLMKVIFD 456

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI ++   L+++S +  + +  LE+ IY+L+GE+FN++SPKQL D+LF K+     
Sbjct: 457 MEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKK 516

Query: 643 AKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            K+K     +T  + LE +      I   IL WR LSK+K TY D+L   ++    R+HT
Sbjct: 517 KKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHT 576

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +S  +T TGRL+S  PNLQNIPI+++ G  IR+AFI+P   K+ISADYSQIELR+LAH+
Sbjct: 577 SFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHV 636

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A +    + F N  DIH + A ++FGV  +++  Q+RR AK+INF IIYGISPF LA +L
Sbjct: 637 ANVAAFKEAFANGQDIHEITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRL 694

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I  +EAA+YI  YF  +P I  Y+EK  +  R +GYVET+FGRR    +IN+    IR 
Sbjct: 695 GITIAEAAEYINYYFSCYPEIKAYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQ 754

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ERAAINAP+QG+AADI +RA I +   L+      K++LQ+HDEL+ EV +E++   +
Sbjct: 755 FAERAAINAPLQGTAADIIKRATIQLFDQLK----VGKIILQVHDELLVEVEDEKVQETA 810

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++I   ME A    I + +PL+V IK+ +NW
Sbjct: 811 KLIKDIMENA----IEISIPLEVEIKIGDNW 837



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 8/299 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE    ++DG  F++RA+Y  P L     G+P+  + GF NM+ K + +S   +IA    
Sbjct: 2   KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHSDYLTIA---- 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D     FR+ +YP+YKANR   PE L PQ  ++R A +AF +   EI+G+EADDIIA
Sbjct: 57  --LDAGKKNFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114

Query: 123 TYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T     A  + F V ++S+DKDL QL++    ++D +K   ID + VI+K+G+   K++ 
Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L +LTGD+ DNIPG+PGIG KTAA LL E+ +L NI+ N   I+Q + R  + E+ E A 
Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +SR+L+ L   V +   +    +   N  +L+SFLK  EF  LI +V   +    ++ E
Sbjct: 235 ISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKVEKLFSYSGSSTE 293


>gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50]
          Length = 665

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 237/716 (33%), Positives = 372/716 (51%), Gaps = 68/716 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA------ 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I     R   +  A      
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKIMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ + ++  
Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S++           L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +   T +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664


>gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16]
 gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16]
          Length = 877

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/505 (39%), Positives = 315/505 (62%), Gaps = 16/505 (3%)

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSI 528
           + L  +G+ + G + D+ + SY+LD   SSH+I+ IA +  +    E      K  K S+
Sbjct: 379 VALAWHGVDLNGVDFDLQMASYLLDPSLSSHEISDIATRKGTGGVAEDEAVYGKGAKRSL 438

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P     ++ + EH    +N +  L   L  +L   + L + ++L+ P+  V+ +ME  G+
Sbjct: 439 P----EEAALAEHLCRKANAMFTLKSTLEDELAQNEQLELLKKLEMPLSVVLGRMEKEGV 494

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D++ L+++  ++S  L +LE+ I+  +GE FN++SPKQLG ILF KL  P   KTKTG
Sbjct: 495 RVDREQLEEMGKDLSDRLNTLEKAIHKEAGEPFNINSPKQLGVILFEKLGLPPVKKTKTG 554

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T+A  LE++  G +PII+++L +RQL K+ STY + L   I+  T +VHT ++ A T
Sbjct: 555 -YSTSADVLEKL-AGTHPIIEHLLLYRQLGKLYSTYIEGLLKVIDSETGKVHTRFNQALT 612

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S +PNLQNIPI+ + G+KIR+AF+ S    K+++ADYSQIELR+LAHI+    +
Sbjct: 613 QTGRLSSTDPNLQNIPIRLEEGRKIRKAFVASKEGWKIVAADYSQIELRVLAHISGDERM 672

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F   +DIH   A ++F V  E+V+  MRR AK +NF I+YGIS + L+  L I R E
Sbjct: 673 KEAFLTGMDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIVYGISDYGLSQSLGITRKE 732

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A D+I RY   +P +  Y+E      ++ GYV+T+  RR +  E+ S   + R+  ER A
Sbjct: 733 AKDFIDRYLASYPQVKAYMENVVKEAKEKGYVQTLLARRRYLPELKSRNFNQRSFAERTA 792

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N PIQG+AADI +RAM+ + ++LE+  L   MLLQ+HDEL+FEV  +++    +++   
Sbjct: 793 MNTPIQGTAADIIKRAMVKMSEALEETGLKANMLLQVHDELIFEVAPDDVEPLQELVTEV 852

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           ME+A    + L VPL+V++   N+W
Sbjct: 853 MEQA----LELDVPLQVDVSSGNSW 873



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 170/308 (55%), Gaps = 9/308 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+ +  G   NA+ GF  ML K+L++ +     SH  V FD
Sbjct: 4   LVLIDGNSIAYRAFFALPLLNNEK-GEYTNAVYGFTTMLLKVLEDEK----PSHMLVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y  YK  R K P  L  Q+P++     AF I   E+  +EADDII T   
Sbjct: 59  AGKSTFRHQTYAAYKGTRQKTPSELSGQIPMIHQVLDAFSIKRYEVDEYEADDIIGTAAT 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            A KEGF V +I+ DKDL+QLV     +  T K     ++ + E V +++G+ P++++ L
Sbjct: 119 NAAKEGFDVVVITGDKDLLQLVDDRVEVVLTKKGISEVDRYNREKVAERYGLEPKQIIDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GDS DNIPG+PG+G KTA  LL E+ ++E +L +   I  KK +E + E  + A L
Sbjct: 179 KGLMGDSSDNIPGVPGVGEKTALKLLAEFRDVETVLDSIDAISGKKLKERLQENKDQALL 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KL  +  DVP+   L+          ++    K L F  L+ R+    D ++A  +  
Sbjct: 239 SKKLATIALDVPLAETLDSFEYGGYEYKQVKEAFKELSFHSLLGRIDGNGDEESAPQQLT 298

Query: 303 VLDINTTE 310
            LD +  E
Sbjct: 299 ELDFDIVE 306


>gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
 gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
          Length = 886

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 207/573 (36%), Positives = 338/573 (58%), Gaps = 18/573 (3%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + +  ++   D     + I + L+    Q     + L  E    ++ +  +    K G++
Sbjct: 323 VTVLHVETHGDNPHHADVIGLALATEERQYFLPFDVLKSEEAEPVRAWLADSEIPKRGYD 382

Query: 469 IKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE---ILKS 523
           +    L LH  GI+  G   D+ L +Y+LD   S+  ++ +A K+ L+Y + +     K 
Sbjct: 383 LHRIDLALHWQGIAFAGAAFDVHLAAYLLDPTESNQTLSGLASKYGLAYLQADEDVFGKG 442

Query: 524 RKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
            K  +P ++K+S     EH       + +L  +   +L   ++L ++  L+ P+  +++ 
Sbjct: 443 AKYKVPDVEKLS-----EHMARKCLAVSELVPIQEKELAANEMLPLFHDLEMPLSRILAD 497

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI ++ + LK++  E    +  L + IY+++G +FNL+SPKQLG+ILF KL+ P  
Sbjct: 498 MEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGTEFNLNSPKQLGEILFVKLELPVI 557

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    + I++ IL++R L+K++STY + L   I+  T +VHT+
Sbjct: 558 KKTKTG-YSTDAEVLEKL-APYHDIVRLILQYRTLAKLQSTYVEGLLKEISSVTGKVHTY 615

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761
           Y      TGRL+S  PNLQNIPI+ + G+K+R+ F+ S P   +++ADYSQIELR+LAHI
Sbjct: 616 YRQTIAATGRLSSQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHI 675

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    L + F + +DIH   A ++FGV +++V   MRR AK +NF I+YGIS + L+  L
Sbjct: 676 SDDERLKEAFVHDMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQNL 735

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I R EAA +I +YF  F G+  Y++      +Q+GYV+T+  RR +  EIN+   ++R+
Sbjct: 736 NITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRS 795

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+N PIQG+AADI + AM+ + K+L + +L ++MLLQ+HDELVFEVPE+E+    
Sbjct: 796 FAERTAMNTPIQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMK 855

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +++   M +A    + L VPLK  +    NW E
Sbjct: 856 ELVPDVMSQA----LKLSVPLKSEVSYGENWYE 884



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/320 (35%), Positives = 179/320 (55%), Gaps = 16/320 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG++ IYRAF+A P L+    G   NA+ GF  ML +L++  +     +H  V 
Sbjct: 2   DKLILIDGNNIIYRAFFAMPPLTNA-SGQQTNAVYGFTTMLLRLIEEHK----PTHMMVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  + +YK  R K P  L  Q PL++   +  G+   EI G+EADDII T 
Sbjct: 57  FDAGKETFRHADFQEYKGGRQKTPPELSGQFPLLKELLKGLGVSQFEIGGYEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
           T  A++ G  V ++S DKD++QL S  T +   V++   +IE+     + +++ + P+++
Sbjct: 117 TRQADEAGRKVMVVSGDKDMLQLASEHTTIA-MVRKGVTEIEYYGPEQIKERYNLTPDQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD+ DNIPG+PG+G KTA  LL E+G++E ++     +K  K +E I E+A++
Sbjct: 176 IDLKGLMGDASDNIPGVPGVGEKTALKLLHEFGSVEAVVSRTDELK-GKMKEKIEEHADS 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDA 296
           A LS+KL  +  +VP+   L+ +     N       L  LEF  LI R+    +    DA
Sbjct: 235 AILSKKLATIFREVPLEQSLDEMAFTGLNEETAGPALAKLEFKSLIERLNLSTSGAPGDA 294

Query: 297 ANIEP-VVLDINTTENKGIA 315
           A  +P   +D+   +  GIA
Sbjct: 295 AESKPEAKIDVTLVDATGIA 314


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/528 (39%), Positives = 311/528 (58%), Gaps = 12/528 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRS---SH 503
           E+++ L+        LK+GHN+KYD  VL  + G+ +    D M+ +++L+ GR+     
Sbjct: 367 EVMAVLEPLLTCADILKVGHNLKYDWTVLKMQTGVEIFPLADTMVAAHLLEKGRTLKLDD 426

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
             A I  +  S+   E++   K +     ++  +   ++ E+    L LW     KL  +
Sbjct: 427 LCAEIGLELTSFA--EVVAEDKRADAFAYVALKEACHYSCEDVYGALSLWQDFGEKLSDK 484

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            L  ++  ++ P+I V+++MEI G+ +D  +L +++A+  + +  L   IY   G +FN+
Sbjct: 485 ALDGLFYDVEMPIIPVLAKMEIGGVCLDSTVLVELAAQFEEQIGELAATIYQEVGHEFNI 544

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           SSPKQLG ILF +L  P G KTKTG + T  + +E++    +P+   IL++R ++K+KST
Sbjct: 545 SSPKQLGVILFEELGLPHGRKTKTG-FSTDVKVMEKL-ASQHPVPALILKYRTIAKLKST 602

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D L    N  T R++T ++   T TGRL+S  PN+QNIPI+ + G +IRRAF+    K
Sbjct: 603 YVDKLLLLKNPETGRIYTSFNQTITATGRLSSSNPNMQNIPIRMEEGNRIRRAFVPEAGK 662

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             ++ADYSQI+LR+LAH +    L + F    DIH   AAE+F V+   V+P+MRR AK+
Sbjct: 663 VFLAADYSQIDLRVLAHYSGDDALTRAFAAGQDIHARTAAELFSVSTMLVNPEMRRVAKS 722

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           INF I+YG+S F LA QL I R EA  +I RYFH + G+ +++       R+ GY  T+ 
Sbjct: 723 INFGIVYGMSAFGLAQQLGIGRKEAQRFIDRYFHLYAGVKQFMIDIVEQTRERGYATTLL 782

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR    +I++    +R   ER AIN PIQG+AADI + AMI+V K L    L  KMLLQ
Sbjct: 783 GRRRAVPDIDAKNKGMREFAERMAINTPIQGTAADIIKCAMIAVEKKLAAAGLGAKMLLQ 842

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           IHDELVFEV E E+     ++  +ME A    + L VPL  NI+V ++
Sbjct: 843 IHDELVFEVSEAELAETRVVVQEAMESA----LQLDVPLVANIEVGHS 886



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/283 (39%), Positives = 172/283 (60%), Gaps = 7/283 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +N+++++DGS++IYRA++A  PL +R  +GL  +AI GF NM+ +L+    K+ + +   
Sbjct: 2   KNNIYVIDGSAYIYRAYHAVAPLTTR--EGLHTHAILGFVNMIRRLI----KDKVPALMV 55

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD     FR+E+YP YKANRP +PE L  Q+P ++   +A G+  +E  G EADDIIA
Sbjct: 56  IAFDSRGPVFRHEMYPKYKANRPMMPEDLQEQIPYIKEFVKASGLLLLEEAGVEADDIIA 115

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +       E  AVT++S DKDL+QLV     ++D +K++ +D   V +K+ + P +++  
Sbjct: 116 SIAKKFASEECAVTVVSGDKDLLQLVDANVSMFDPMKDKLMDSVAVHEKYNVYPHQLLDT 175

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GDS DNIPG+PG+G KTA  L+  +G+LE +  N S +KQ K +E I+   + A L
Sbjct: 176 FALMGDSADNIPGVPGVGPKTAEKLINAHGSLEGLYENVSGMKQSKMKEKIIANRDLAFL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           SR L+ L+ DV I   L+   L      +L      LEF + +
Sbjct: 236 SRDLISLKMDVEIPSALQDYQLGGEQEAQLNELFTKLEFNRFL 278


>gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1]
 gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1]
          Length = 887

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 326/527 (61%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+   E+E   K   ++K   + LHR GI + G + D++L SY++++  +S+D+  IA  
Sbjct: 367 LRHLLEDEQIKKNVFDLKRTMVGLHRLGIHVHGQDYDMLLASYLINNENNSNDLGEIAHL 426

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K   EI  K +   +P D   D ++  H     N I  L   L  KL   +   
Sbjct: 427 YGDYSVKTDIEIYGKGKSEHVPDD---DEELFNHLASKVNAIENLKQPLLEKLKEHEQDD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++MEI G++++   L ++  E +  L  LE+ IY  +GE+FNL+SPK
Sbjct: 484 LFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKIYQQAGERFNLNSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 544 QLGHILFEKLNLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ + P   + 
Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPTEPDGYIF 660

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A  IF ++  ++V+P MRRHAK +N
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVN 720

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I EY++K     R+ GY ETI  R
Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHR 780

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 781 RRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 840

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/310 (37%), Positives = 170/310 (54%), Gaps = 15/310 (4%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGDYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKDYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    E+ GF  TI++ D+DL QL S  T +  T     + E    EH+ +  G+ P + 
Sbjct: 122 FATKGEENGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+ GIG KTA+ L+Q+Y  +EN+  +   +K  KR+E ++     
Sbjct: 182 IDMKALMGDSSDNYPGVEGIGPKTASNLIQKYHTVENLYDHIDDLKASKRKERLIRDKHN 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L +KL  +    P+TI ++ +  +  +  +L  F + + F K +  + A+    DA  
Sbjct: 242 AILGKKLATIDRHSPVTIDIDDVKRQPIDYEKLRQFYEKMNFRKFLAELNASGQGQDATE 301

Query: 299 IEPV---VLD 305
           +E V   VLD
Sbjct: 302 VEKVEYTVLD 311


>gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
 gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
          Length = 887

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 326/527 (61%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+   E+E   K   ++K   + LHR GI + G + D++L SY++++  +S+D+  IA  
Sbjct: 367 LRHLLEDEQIKKNVFDLKRTMVGLHRLGIHVHGQDYDMLLASYLINNENNSNDLGEIAHL 426

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K   EI  K +   +P D   D ++  H     N I  L   L  KL   +   
Sbjct: 427 YGDYSVKTDIEIYGKGKSEHVPDD---DEELFNHLASKVNAIENLKQPLLEKLKEHEQDD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++MEI G++++   L ++  E +  L  LE+ IY  +GE+FNL+SPK
Sbjct: 484 LFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKIYQQAGERFNLNSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 544 QLGHILFEKLNLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ + P   + 
Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPTNPDGYIF 660

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A  IF ++  ++V+P MRRHAK +N
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVN 720

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I EY++K     R+ GY ETI  R
Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHR 780

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 781 RRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 840

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/310 (37%), Positives = 170/310 (54%), Gaps = 15/310 (4%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDVGKVTFRTKMYGDYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKDYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    E+ GF  TI++ D+DL QL S  T +  T     + E    EH+ +  G+ P + 
Sbjct: 122 FATKGEENGFITTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+ GIG KTA+ L+Q+Y  +EN+  +   +K  KR+E ++     
Sbjct: 182 IDMKALMGDSSDNYPGVEGIGPKTASNLIQKYHTVENLYDHIDDLKASKRKERLIRDKHN 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L +KL  +    P+TI ++ +  +  +  +L  F + + F K +  + A+    DA  
Sbjct: 242 AILGKKLATIDRHSPVTIDIDDVKRQPIDYEKLRQFYEKMNFRKFLAELNASGQGQDATE 301

Query: 299 IEPV---VLD 305
           +E V   VLD
Sbjct: 302 VEKVEYTVLD 311


>gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
 gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
          Length = 890

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/532 (39%), Positives = 327/532 (61%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L K  E+++  K   ++K + + L R  I++    +DIML SY+ DS  ++ D+  +A  
Sbjct: 371 LNKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNAGDLGVLANS 430

Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  +     EI+     ++ S+ +D +       H     +V+ +L   + P+L   + L
Sbjct: 431 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 485

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 486 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 545

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 546 KQLGVILFEKLKLAPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 603

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 604 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 660

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 661 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 720

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 721 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 780

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 781 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 840

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 841 QIHDELLFDVPSEELDLIKTLVPKIMQQAA----QLDVPLIADANWGHNWYE 888



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 11  LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 64  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           + T   +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 124 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 182

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 183 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKTKEYLIR 242

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 243 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 302


>gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
          Length = 877

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/526 (38%), Positives = 322/526 (61%), Gaps = 20/526 (3%)

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513
           K+ ++E   K   + K   + L   G+ +RG + D+++ +Y+LD   +  D  ++A+   
Sbjct: 360 KWLKDEEMRKYTFDAKRAIVALKWKGVEIRGVDFDLLIAAYLLDPADTDKDFRTVAKMKE 419

Query: 514 SYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           ++  K   E+  K  K ++P  +I    V EH     +V+  +      +L   +   ++
Sbjct: 420 THAVKSDEEVYGKGAKRAVPAQEI----VAEHVARKVHVLYDVKQTFIDELEKNEQYELF 475

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             L+ P+  V++ ME+ G+++D + L+ +  E++  L  +E+ IY+L+G +FN++SPKQL
Sbjct: 476 INLEMPLACVLADMEVKGVKVDTERLRNMGDELAGRLKEMEQEIYELAGTEFNINSPKQL 535

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           G +LF KL  P   KTKTG + T+A  L+++    + II  IL +RQL K+ STY + L 
Sbjct: 536 GVVLFEKLNLPVIKKTKTG-YSTSADVLDKL-MDHHEIIPKILHYRQLGKLNSTYIEGLL 593

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LI 746
             ++  + ++HT ++   T TGRL+S EPNLQNIPI+ + G+KIR+AFI  P+++   + 
Sbjct: 594 KVVHDESSKIHTRFNQVLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFI--PSQEGWVMY 651

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQIELR+LAHIAK   L + F++ +DIH   A ++FGV  ++V+  MRR AK +NF
Sbjct: 652 AADYSQIELRVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNF 711

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS + L+  L I R  A ++I++YF  FPG+ EY+++     +Q GYV T+  RR
Sbjct: 712 GIVYGISDYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRR 771

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+HD
Sbjct: 772 RYIPEITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIVMADRLEEEGLQARLLLQVHD 831

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FEVP+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 832 ELIFEVPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 873



 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTFSDYKGGRQKTPPELSEQFPFIRELLDAFRVPRYELEDYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGAQVKVISGDKDLLQLVSDHTRVCIPRKGITEVDEYTKEALFEKYNLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +  + E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENLDQVSGKKLKEKLETHKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A +S++L  + TD PIT+ ++ +  +      +I   + L FT L+N++ A + +  +A 
Sbjct: 237 AFMSKELATIITDAPITVHIDDIEYKGYEAGDIIPLFENLGFTSLLNKLGAPSEEAVSAE 296

Query: 299 IEPVVLDI 306
           ++ +  +I
Sbjct: 297 LDDISFEI 304


>gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
 gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
          Length = 888

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 215/528 (40%), Positives = 318/528 (60%), Gaps = 18/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   +++   K   N K   + LHR GI +     D++L SY+L++  +S+D+  +AQ+
Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHRLGIPLENINFDLLLASYLLNTNDNSNDLGQVAQE 425

Query: 512 WLSY----TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
              Y    T +E+  K  K ++P D   D     H    +  I  L      KL   K  
Sbjct: 426 H-GYDDVRTDEEVYGKGAKRAVPDD---DETFFSHLATKARAIEHLRKDFFAKLDENKQT 481

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +Y  ++ P+  V+++MEI G+ +D   LK + +++++ L  +E  IY  +GE+FN++S 
Sbjct: 482 PLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEFNINST 541

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK P   KTKTG   +TA D+ +     +PI++ ILE+RQ++K++STY  
Sbjct: 542 KQLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADKSPIVEQILEYRQIAKLQSTYIT 599

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            L   I+   Q++HT Y    T TGRL+S++PNLQNIP++   G+ IR+AF+ S    ++
Sbjct: 600 GLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQI 659

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTI 804
            S+DYSQ+ELR+LAHI     L + F+N  DIH   A  IF +  + ++   MRR AK +
Sbjct: 660 FSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAV 719

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + LA ++ + R+EA ++I+ YFH FPG+ +YI  T  F ++NGYVETI  
Sbjct: 720 NFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITH 779

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I++   S R+  ER A+N PIQGSAADI + AMI +   LE   L  KMLLQI
Sbjct: 780 RRRYLPDIHAKSFSKRSFAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQI 839

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDELVFE P+EEI   S+++   M+ A    + L VPLKV+ K  + W
Sbjct: 840 HDELVFEAPKEEIPILSELVPKVMDSA----VKLDVPLKVDSKYGDTW 883



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 167/314 (53%), Gaps = 13/314 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S ++RAF+A      K    DGL   AI GF  ML  +LQN + ++      V
Sbjct: 5   LLLIDGNSIVFRAFFAMHNQMDKFTNKDGLHTAAIYGFKLMLDHVLQNFKPDTAL----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K P  L  Q+P VR   +  G+ + E+  +EADDII T
Sbjct: 61  AFDAGKVTFRTKMYDDYKGGRNKTPNELTEQIPYVRELIKDSGLHSYELANYEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179
               A+  G+   I++ D+DL QL S  T +  T K     E     HV +K GI P ++
Sbjct: 121 LAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTPAHVEEKLGITPRQI 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+  IG KTA  L++++G++E +  +   +K+ K +E+++E  E 
Sbjct: 181 IDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYDHIDDLKKSKMKEHLIEDEEI 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--VATTYDCDAA 297
           AR  + L  +  D P+ I L+ L  +      LI F K + F   + +  +    + D A
Sbjct: 241 ARQCKTLATILRDAPLKIGLDDLQYQGPQTDDLIKFYKEMGFKSFLKKMDIDGAGEEDEA 300

Query: 298 NIEPVVLDINTTEN 311
            I P+   + T +N
Sbjct: 301 EIAPIDYTVLTKDN 314


>gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
 gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
          Length = 877

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/528 (39%), Positives = 319/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            KK+ E+E   KI ++ K  ++ L  +GI ++G E D+++ SY+++   S  D AS+A++
Sbjct: 358 FKKWAEDESKKKIVYDAKRTEVSLRHHGIHLKGVEFDLLIASYIINPSESIEDFASVAKR 417

Query: 512 ----WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
                +        K  K  IP    +  ++  H    +  +  L   L  +L   +   
Sbjct: 418 HGYNGVQTDDAVYGKGAKRKIP----AQEELAGHLARKAAALEALRDKLEDELKENRQYE 473

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  +++ ME  G+++D + L+ +  +I++ L  +EE I++L+GE FN++SPK
Sbjct: 474 LFYDLEMPLSLILADMESQGVKVDLERLQAMGEQINQKLGDIEERIHELAGEAFNINSPK 533

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+A  LE++    + II+ IL++RQL K++STY + 
Sbjct: 534 QLGVILFEKLGLPPVKKTKTG-YSTSADVLEKLED-KHEIIREILQYRQLGKLQSTYIEG 591

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L    +K+T +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P++K   
Sbjct: 592 LLKVTDKKTGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKGWV 649

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F    D+H   A E+F V+  +V+  MRRHAK +
Sbjct: 650 IFAADYSQIELRVLAHIAGDEKLIEAFREDQDVHTKTAMEVFHVSEGEVTSNMRRHAKAV 709

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R EA  +I RY   +PG+ EY++      +Q GYV T+  
Sbjct: 710 NFGIVYGISDYGLSQSLGITRKEAGQFIDRYLESYPGVREYMDDIIQEAKQKGYVSTLLH 769

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAAD+ ++AMI +   L +  L +++LL +
Sbjct: 770 RRRYLPEITSRNFNLRSFAERTAMNTPIQGSAADVIKKAMIDMADRLREEGLQSRLLLSV 829

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE PEEEI    +I+   ME      ++L VPLKV+      W
Sbjct: 830 HDELIFEAPEEEIEILKRIVPDVMENT----VDLDVPLKVDFSYGPTW 873



 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 170/287 (59%), Gaps = 9/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML ++L++       SH  V FD
Sbjct: 5   LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAVYGFTMMLMRILEDED----PSHILVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + +YK  R K P  L  Q P +R    A+ IP  E++ +EADDII T + 
Sbjct: 60  AGKTTFRHKTFTEYKGGRQKTPPELSEQFPFIRDLLDAYQIPRYELENYEADDIIGTLSL 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE+EGF V +IS DKDL QL S  T +  T K     E+   EH+ +K+G+ P +++ +
Sbjct: 120 QAEQEGFEVKVISGDKDLTQLSSEHTTVGITRKGITDIEEYTPEHIREKYGLSPGQIIDM 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GDS DNIPG+PG+G KTA  LL+E+  LEN+L +  R+  +K +E + E+ + A +
Sbjct: 180 KGLMGDSSDNIPGVPGVGEKTAIKLLKEFETLENLLGSIDRVSGQKLKEKLEEHKDLAVM 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           S++L  +  + P+ + +E +     +  +++S  K L F  L+ ++ 
Sbjct: 240 SKELATITREAPVEVKVEDVGYSGYDQAKVVSLFKDLGFNSLLEKIG 286


>gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
          Length = 883

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/532 (39%), Positives = 327/532 (61%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L K  E+++  K   ++K + + L R  I++    +DIML SY+ DS  ++ D+  +A  
Sbjct: 364 LNKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNAGDLGVLANS 423

Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  +     EI+     ++ S+ +D +       H     +V+ +L   + P+L   + L
Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 539 KQLGVILFDKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 834 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 881



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 162/297 (54%), Gaps = 13/297 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA      K    DGL  NAI  F NML  LL+N +     +H  V
Sbjct: 4   LLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNMLDVLLKNIQ----PTHMLV 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+ T
Sbjct: 60  AFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDILGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEK 178
              +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ P++
Sbjct: 120 MAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVTPKQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++    
Sbjct: 179 FIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIRDKN 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 239 NAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair
           Position
 gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position
 gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair
           Position
 gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site
           (- 1 Basepair Position)
 gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position
 gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion
           Site
 gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion
           Site (-1 Basepair Position)
          Length = 580

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
 gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
          Length = 580

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 635

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 214/536 (39%), Positives = 331/536 (61%), Gaps = 24/536 (4%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDI 505
           E L  L+K FE E    + H IK D LV   Y GI  +  + D  +M+Y+L+   S++D+
Sbjct: 109 ERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDL 167

Query: 506 ASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL---WLLLRPK 559
             + +K+L     + +E+    K     +++S+  + E+     + + +L    +    +
Sbjct: 168 ERVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEE 227

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           + ++KLL     ++ P+++V+  ME+ G  +D+++LK++S +I + +  + + IY  +G 
Sbjct: 228 MDMKKLLL---EIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGY 284

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SPKQLG+ LF KL  P   KTKTG + T ++ LEQ+    N I+  I+E+RQL+K
Sbjct: 285 QFNVNSPKQLGEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLTAY-NDIVSEIIEYRQLTK 342

Query: 680 IKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           +KSTY +  LP  +     RVH+ +      TGR++S EPNLQNIP++ + G++IRRAFI
Sbjct: 343 LKSTYIEGFLP--LMDENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFI 400

Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            P TK   ++SADYSQIELR+LAH+++   L + F N+ DIH   A+E+F V  + V+P+
Sbjct: 401 -PRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPE 459

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MRR AK +NF IIYGIS + LA  L+I R EA +YI  YF ++ G+ EYIEK   F ++N
Sbjct: 460 MRRAAKVVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKEN 519

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYV TI  RR +  EINS   + R+  ER A+N PIQGSAADI + AM+ V++  +   L
Sbjct: 520 GYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNL 579

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++LQ+HDELV +  ++E+    +I+  SME      I L+VPL V I V  NW
Sbjct: 580 KSRLILQVHDELVVDTYKDELELVKEILKESMENV----IKLKVPLVVEIGVGPNW 631


>gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase
           Active Site
 gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active
           Site
 gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair
 gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site
 gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch
 gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A
           Dna Polymerase
 gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine
           At The Polymerase Active Site
          Length = 580

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 437

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/437 (45%), Positives = 291/437 (66%), Gaps = 6/437 (1%)

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS 523
           N+KYD+ VL  YGI +RG   D ML SY+L+S    HD+ S++ +WL +   T ++I   
Sbjct: 1   NLKYDRGVLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGK 60

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQ 582
            K+ +  ++I+  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S+
Sbjct: 61  GKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSR 120

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G++ID  +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K      
Sbjct: 121 VERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPL 180

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT 
Sbjct: 181 KKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTS 239

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH++
Sbjct: 240 YHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 299

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F    DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL 
Sbjct: 300 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLN 359

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR EA  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R  
Sbjct: 360 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAG 419

Query: 883 NERAAINAPIQGSAADI 899
            ERAAINAP+QG+AADI
Sbjct: 420 AERAAINAPMQGTAADI 436


>gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
 gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
          Length = 891

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 350/575 (60%), Gaps = 17/575 (2%)

Query: 411 ISTLDQKDDTSFKVETIFIDL------SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
           IS +++K + + KV T   ++       ++ + D      +++E +   K   E++   K
Sbjct: 321 ISLINEKGEFALKVVTKVGNILEKNIICMYITLDGDKVFCVSEERIMDFKAVLESKDIKK 380

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYT---RKE 519
            G+N+K D + L  Y I+++G   DI +  Y++DS   ++ +  +IA K+L  +   ++E
Sbjct: 381 YGYNMKEDYVALMPYEIALKGMSFDIAIAEYLIDSTSTNTSECGAIAMKYLMKSVKSKEE 440

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           +L     +   + ++  ++  +     N ++     ++ ++   K+  +++ ++ P+++V
Sbjct: 441 LLGKGVKAKKFEDLTKEELSGYISSILNTVVNAMPKMKEEIESTKIEKLFDDVEMPLVEV 500

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +  ME TGI++D+++L ++  E +K + SLEE IY  +GE+FN++SPKQLG ILF KL+ 
Sbjct: 501 LGNMEYTGIKVDKEMLDELGKEFTKIISSLEEEIYGYAGEEFNINSPKQLGVILFEKLEL 560

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KTKTG + T A+ LE++    +PII  I E+RQ+ K+ STY + L   IN    R+
Sbjct: 561 PVIKKTKTG-YSTNAEVLEKLK-DKHPIIDKIGEYRQIVKLNSTYVEGLTALINPIDGRI 618

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           H+ ++   T TGR++S EPNLQNIP++ ++G+++R  F+S   K+L+ ADYSQ+ELR+LA
Sbjct: 619 HSTFNQTITTTGRISSTEPNLQNIPVRMEIGRRLRAVFVSDDEKRLVDADYSQVELRVLA 678

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    +   F++  DIHR  A+++F V +E+V+ ++R  AK +NF IIYG + F L+ 
Sbjct: 679 HMSGDQNMIDAFKHGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIYGKTDFGLSE 738

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L IP  +A  YI+ YF ++  I E+++       ++GY +T+F RR +  EI S     
Sbjct: 739 DLNIPVPQAKQYIESYFAKYEKIKEFMDNIIETAEKDGYSQTMFNRRRYIPEIKSKNFME 798

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  +RAA+NAPIQGSAADI + AM++V + LE  +L +K++LQ+HDEL+ E P +E+  
Sbjct: 799 RNRGKRAAMNAPIQGSAADIIKIAMVNVFRRLEKEELRSKLILQVHDELIVETPIDELEK 858

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +I+   ME A    ++++V L V++    +W E
Sbjct: 859 VEKIVREEMENA----VDMKVALTVDLNTGVSWYE 889



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/287 (36%), Positives = 163/287 (56%), Gaps = 9/287 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S I RAFYA P      +GL  NAI GF  ML+K+++        +H +V F
Sbjct: 11  RLIIIDGNSIINRAFYALPQTMDNKEGLHTNAIYGFTTMLFKMIEIYE----PTHISVAF 66

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y  YKA R K+P+ L  Q+  ++    AF I   EI G+EADDII T +
Sbjct: 67  DRKAPTFRHKEYSKYKAGRKKMPQELFEQMQPLKDLLDAFKIERFEIDGYEADDIIGTIS 126

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE++GF V I++ DKD +QL S  T    T K     E+ + + VI+K+ + P + + 
Sbjct: 127 KAAEEDGFEVFIVTGDKDAIQLASNKTTTLITKKGVADVEEYNYDSVIEKYEMTPTQFID 186

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+PG+G KT   L++++G++EN++ +   +K   +++      E A 
Sbjct: 187 LKGLMGDKSDNIPGVPGVGEKTGIKLIKQFGSIENLVEHTDELKGSIKKKIEEN-KEEAI 245

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            S+ L  +  DVPI   L+ ++  D     +I   +  +FT LI +V
Sbjct: 246 HSKWLATIVRDVPIEFDLDKMVFGDYKVEDVIEKFQFFKFTSLIKKV 292


>gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
 gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
          Length = 883

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/532 (39%), Positives = 327/532 (61%), Gaps = 24/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L K  E+++  K   ++K + + L R  I++    +DIML SY+ DS  ++ D+  +A  
Sbjct: 364 LNKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNAGDLGVLANS 423

Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  +     EI+     ++ S+ +D +       H     +V+ +L   + P+L   + L
Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
            L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK
Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI
Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+L
Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F+VP EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 834 QIHDELLFDVPSEELDLIKTLVPKIMQQAA----QLDVPLIADANWGHNWYE 881



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 4   LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 57  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           + T   +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna.
 gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 10 Base Pairs Of Duplex Dna
           Following Addition Of A Single Dttp Residue
 gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 11 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp And A Datp Residue.
 gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 15 Base Pairs Of Duplex Dna
           Following Addition Of Dttp, Datp, Dctp, And Dgtp
           Residues.
 gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 12 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp, A Datp, And A Dctp
           Residue.
 gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site
 gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site
 gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site
 gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site
 gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site
 gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site
 gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site
 gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site
 gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site
 gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Two Rounds Of Primer
           Extension, Following Incorporation Of Dctp And Dgtp.
 gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Three Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, And
           Dttp.
 gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Five Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, Dttp,
           And Datp.
 gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Cytosine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A
           Benzo[a]pyrene Adduct That Blocks Replication
 gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As
           Yet Unnamed) Dna Polymerase Fragment
          Length = 580

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX
 gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 11 Base Pairs Of Duplex Dna After Addition
           Of Two Datp Residues
 gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna
          Length = 580

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
          Length = 886

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 324/527 (61%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
           LK + E+    K    +K  ++  +R G+ + G + D++L SY+L++  +S+D+ ++A  
Sbjct: 365 LKDWLEDASHPKAVFGVKRTQVAANRLGVHLAGVDFDLLLASYLLNTTNNSNDLGTVANL 424

Query: 510 QKWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            ++ +    E +  K  K ++P +    + + +H ++ +  I  L   L  +L   +   
Sbjct: 425 HEYQNVQTDEAVYGKGAKRAVPTEP---ALLYQHLVQKAAAIYHLQPQLEEQLKEHQQFD 481

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  ++ P+  V++QMEITGI++D   L+Q+ +E S+ L  LEE +Y  +GE FN++SPK
Sbjct: 482 LFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEAGETFNINSPK 541

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF K+  P   KTKTG + T    LEQ+   D PI++ IL++RQ++KI+STY + 
Sbjct: 542 QLGVILFEKMGLPVVKKTKTG-YSTAVDVLEQLRK-DAPIVQTILDYRQIAKIQSTYVEG 599

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   I++   +VHT Y    T TGRL+S++PNLQNIP++   G+KIR+AF+ S P  ++ 
Sbjct: 600 LLKSIHQDN-KVHTRYLQTLTQTGRLSSVDPNLQNIPVRLAEGRKIRQAFVPSHPDWQMF 658

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTIN 805
           ++DYSQIELR+LAHI+    + + F+   DIH   A +IFG+N  ++V+P MRR AK  N
Sbjct: 659 ASDYSQIELRVLAHISGDANMQEAFKEDRDIHANTAMKIFGLNSADEVTPDMRRQAKATN 718

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  + I R EA  +I  YF ++PG+ +++       R+ GYVET+F R
Sbjct: 719 FGIVYGISDYGLSQNIGISRQEAKRFIDAYFEQYPGVQQFMVDIVKKAREEGYVETLFHR 778

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++   ++R+  ER A+N PIQGSAADI + AMI + + L+   L  +MLLQ+H
Sbjct: 779 RRYLPDIHAKNFNLRSFAERTAMNTPIQGSAADIIKVAMILMQQELKKANLQARMLLQVH 838

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+FE P EEI    +++   M+ A    + L VPLKV       W
Sbjct: 839 DELIFEAPTEEIPILQKLVPSVMDSA----VKLAVPLKVESGFGPTW 881



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 168/319 (52%), Gaps = 13/319 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLL---SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAFYA   +       DGL  NAI  F NML  +L    K   
Sbjct: 1   MGSQKSLLLIDGNSVAFRAFYAMHQVLDSFTNQDGLHTNAIYAFKNMLDIIL----KRFE 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR   + DYK  R K P  L  Q P ++    A+GI   E+  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTAQFADYKGGRSKTPPELTEQFPYIKELLHAYGIQTAELANYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWG 173
           DDII T    AE++GF V I++ D+DL QL +  T +  TVK     E    EHV +K G
Sbjct: 117 DDIIGTLASQAEQDGFVVNIVTGDRDLTQLTTDKTTVNITVKGVNDTEAYTPEHVQEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++V L+ L GD+ DN PG+  +G KTA  LL E+G++E +  N   +K+ K +E++
Sbjct: 177 LAPSQIVDLKGLMGDTSDNYPGVTKVGEKTALKLLTEFGSIEGVYENVDAMKKSKMKEHL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +E  + A +S+KL  +  D PI   L  +  E  N   LI+F + + F   + ++  T +
Sbjct: 237 IEDRDQAFMSKKLATILRDAPIETTLADITYEGPNIDTLIAFYQEMNFQNFLKQLNVTPE 296

Query: 294 C--DAANIEPVVLDINTTE 310
               A N +  VL ++  E
Sbjct: 297 AVEPAENYQYTVLTLDNLE 315


>gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905]
 gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905]
          Length = 875

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 210/531 (39%), Positives = 322/531 (60%), Gaps = 22/531 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+ + E+   +K   + K  +  L R GI + G + D++L SY+ + G S  D+A++A++
Sbjct: 356 LRCWLEDSSKIKYMSDSKASQAALKRAGIQLAGVDFDLVLASYINNPGLSGDDVATLARE 415

Query: 512 WLSYTRKE----ILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
              Y  +       K  K +IP IDK++     +H    +  +  L   L   L   +  
Sbjct: 416 LGYYDVQADETVYGKGAKRAIPEIDKLA-----QHVSRKAYAVWSLQPKLEALLKENEQF 470

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +Y+ L+ P+  ++ +ME  GI +++  L+++  E+++ L+ LE+ IY  +GE FN++SP
Sbjct: 471 DLYKDLELPLAAILGEMESEGITVNRATLEKMGQELNEKLVVLEQEIYAEAGETFNINSP 530

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KL  P   KTKTG + T A  LE++   ++ II+ IL +RQL K++STY +
Sbjct: 531 KQLGVILFDKLGLPVIKKTKTG-YSTAADVLEKLKS-EHAIIEYILLYRQLGKLQSTYIE 588

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L   I+++  +VHT +  A T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+ +  
Sbjct: 589 GLLKEIHEKDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSNENW 646

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L SADYSQIELR+LAH+++   L + F   +D+H   A ++F V+ ++V   MRR AK 
Sbjct: 647 ILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R EAA +I +YF  FPG+ +Y++      + NGYV TI 
Sbjct: 707 VNFGIVYGISDYGLSQNLDITRKEAATFIDKYFASFPGVKQYMDDIVQNAKFNGYVTTIL 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI +   L+   +  K+LLQ
Sbjct: 767 NRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMDARLKKENMQAKLLLQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDEL+FE P+EEI    +I+   ME A    I L VPLKV+    + W E
Sbjct: 827 VHDELIFEAPKEEIALLEKIVPEVMENA----IELSVPLKVDFNHGSTWYE 873



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 160/291 (54%), Gaps = 10/291 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML ++L+    E   + 
Sbjct: 1   MTKEK-LLLLDGNSLAYRAFFALPLLTN-DSGIHTNAVYGFTTMLQRILE----EEQPTQ 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q P +R    A+GI   E   +EADDI
Sbjct: 55  ILVAFDAGKTTFRHETFTEYKGGRQKTPPELSEQFPYIRKLIDAYGIKQYEQDLYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A  +   V I+S D+DL QL +    +Y T K     E+     + +K+G+ P
Sbjct: 115 IGTLAKEASSQDMDVIIVSGDRDLTQLATEQVTVYITKKGITEIERNTPAFIAEKYGLTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  LL+E+G++E +      +K  K +E ++  
Sbjct: 175 LQIIDMKGLMGDSSDNIPGVPGVGEKTAVKLLKEHGSVEALYEAMDTLKASKMKEKLVAN 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            E A++S+KL  + TD PITI L  L     N   LI+  + L F  L+ +
Sbjct: 235 EEQAKMSKKLATIFTDAPITISLTDLAYHGPNEEELINVWRELGFKSLLEK 285


>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
 gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
          Length = 897

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 198/511 (38%), Positives = 298/511 (58%), Gaps = 9/511 (1%)

Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKS 523
           H++K     L R G++  G  ED  LMS +L   R  H +  +A++  S    R     +
Sbjct: 391 HDLKAAAHALARLGLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRSPADGA 450

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           ++ +  ++ +   +V   A   +  +  L   L   L  E+L  +Y  +++P++ V+ +M
Sbjct: 451 KRGAPGLEGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYREVERPLVPVLVEM 510

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TGI +D+  ++ +SAE  +++  LE  I+  +G  FN++S ++L  +LF +L+ P   
Sbjct: 511 ERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPFNVASTRELAQVLFVELELPVVK 570

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           + KTG   +T QD+ +     + + + +LE R LSK+K TY D+LP  ++    R+HT +
Sbjct: 571 RLKTG--PSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTF 628

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
             A   TGRL+S +PNLQNIP++T+L ++IR+AF++P   +L+SADYSQIELRILAH + 
Sbjct: 629 HQAGAATGRLSSSDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSD 688

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L Q F +  D+H   AAE FGV  E+V+P  RR AK +NF I YG+S F L+ +L +
Sbjct: 689 DPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDL 748

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           P SEA   I RYF R+ G+  YIE      R  G   T+FGR     EI +P  ++RN  
Sbjct: 749 PPSEAQGIIDRYFTRYAGVRRYIEWAVEEARAKGESRTLFGRARAMPEIGAPNPALRNAA 808

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN PIQG+AADI + AMI VH +L   + A ++LLQ+HDELV EVPE E+     +
Sbjct: 809 ERTAINTPIQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELEPVEAL 868

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A      L+VPL+V +     W E
Sbjct: 869 VRREMEGAA----RLKVPLEVQVGHGQTWAE 895



 Score =  201 bits (511), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 115/291 (39%), Positives = 162/291 (55%), Gaps = 16/291 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGS FI+RA++A P LS    G+P NA+ GF NML K L    +E   +H A++ D
Sbjct: 4   LTLIDGSGFIFRAYHAIPHLS-TTKGIPTNAVYGFTNMLLKAL----REHAPTHVALVLD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FR++I P+YKANRP+ P+ L  Q PLVR   +A  +P IE  GFEADDIIAT   
Sbjct: 59  AGRRSFRHDIDPEYKANRPEAPDDLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAG 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVC 181
            A   G+ V +++ DKD  QLV     LYD + E            V KK G+ PE++V 
Sbjct: 119 RARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQVVE 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILE 235
            Q++ GD IDN+PGI G+G  TAA L++ +G  E +L     I        +K R+ ++ 
Sbjct: 179 YQSILGDKIDNVPGIAGVGEVTAAALIRHFGTAEAMLARPGEIPAAVSRGGEKLRDKVVA 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            AE  R +R+LV LR D+ +    E       +  R  +    LEF++L+ 
Sbjct: 239 NAERIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVK 289


>gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
 gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
          Length = 885

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 213/527 (40%), Positives = 323/527 (61%), Gaps = 16/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+    K   N K   + LHR GI +R  + D++L SY+L++  +S+D+  +A +
Sbjct: 364 LKKLLESPAVAKNVFNAKAQIVGLHRLGIDLRNVDFDLLLASYLLNTNDNSNDLGQVALE 423

Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +   T +E+  K  K +IP D   D     H  + +  I  L   L  KL   +   
Sbjct: 424 HDYHEVATDEEVYGKGAKRAIPDD---DQTFYTHLAQKARAINDLRDPLFKKLDDNQQTP 480

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y  ++ P+  V++ MEITGI+++   LK + +++++ L  +E+ IY  +GE+FN++S K
Sbjct: 481 LYTEIEVPLTRVLAAMEITGIKVNSQTLKDMGSKLTERLADIEDQIYAAAGEEFNINSTK 540

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KLK P   KTKTG   +TA D+ +      PI+++IL++RQ++K++STY   
Sbjct: 541 QLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADQAPIVEDILQYRQIAKLQSTYITG 598

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   I+   Q++HT Y    T TGRL+S++PNLQNIP++   G+ IR+AF+ S    ++ 
Sbjct: 599 LLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIF 658

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805
           S+DYSQ+ELR+LAHI     L + F+N  DIH   A  IF +  + ++   MRR AK +N
Sbjct: 659 SSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVN 718

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + LA ++ + RS+A ++I+ YF  FPG+ +YI+ T  F R++GYVETI  R
Sbjct: 719 FGIVYGISDYGLAQRIHVSRSQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVETITHR 778

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++   S R+  ER A+N PIQGSAADI + AMI + + ++  +L  +MLLQIH
Sbjct: 779 RRYLPDIHAKSFSRRSFAERTAMNTPIQGSAADIIKIAMIRMKEEIKQRQLQARMLLQIH 838

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DELVFE P EEI    +++   M+ A    + L VPLKV  KV + W
Sbjct: 839 DELVFEAPAEEIPVLQKLVPQVMDSA----VQLNVPLKVESKVGDTW 881



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 163/303 (53%), Gaps = 11/303 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S ++RAF+A      K    DGL   AI GF  ML  +L     ++      V
Sbjct: 5   LLLIDGNSIVFRAFFAMHNQIDKFTNKDGLHTAAIYGFKLMLDHVLDKFHPDAAL----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K P+ L  Q P VR   +A G+ + E++ +EADDII T
Sbjct: 61  AFDAGKVTFRTKMYDDYKGGRNKTPDELTEQFPYVRELVEACGLHSYELKNYEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179
                ++ G+   I++ D+DL QL S  T +  T K     E     HV +K GI P ++
Sbjct: 121 LAKEGDEAGYETLIVTGDRDLTQLASDHTTVAVTHKGVTDTEHYTPAHVEEKLGITPRQI 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+  IG KTA  L++++G++EN+  +   +K+ K +E+++E  E 
Sbjct: 181 IDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVENLYDHIDDLKKSKMKEHLVEDEEI 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           AR  + L  +  D P+ I L+ +        +L++F + + F   + ++    +  A + 
Sbjct: 241 ARQCKTLATILQDAPLEISLDDIAYRGEQTEKLVAFYQQMGFKSFLAKMDLAPEEGADDS 300

Query: 300 EPV 302
            PV
Sbjct: 301 APV 303


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 213/536 (39%), Positives = 331/536 (61%), Gaps = 24/536 (4%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDI 505
           E L  L++ FE E    + H IK D LV   Y GI  +  + D  +M+Y+L+   S++D+
Sbjct: 345 ERLEDLREIFEREDCEFVSHEIK-DFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDL 403

Query: 506 ASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL---WLLLRPK 559
             + +K+L     + +E+    K     +++S+  + E+     N + +L    +    +
Sbjct: 404 DRVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCNHLFELKDKLMSFIEE 463

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           + ++KLL     ++ P+++V+  ME+ G  +D+++LK++S +I + +  + + IY  +G 
Sbjct: 464 MDMKKLLL---EIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGY 520

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SPKQLG+ LF KL  P   KTKTG + T ++ LEQ+    N I+  I+E+RQL+K
Sbjct: 521 QFNVNSPKQLGEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLTAY-NDIVSEIIEYRQLTK 578

Query: 680 IKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           +KSTY +  LP  +     RVH+ +      TGR++S EPNLQNIP++ + G++IRRAFI
Sbjct: 579 LKSTYIEGFLP--LMDENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFI 636

Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            P TK   ++SADYSQIELR+LAH+++   L + F N+ DIH   A+E+F V  + V+P+
Sbjct: 637 -PRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPE 695

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MRR AK +NF IIYGIS + LA  L+I R EA +YI  YF ++ G+ EYIEK   F ++N
Sbjct: 696 MRRAAKVVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKEN 755

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYV TI  RR +  EINS   + R+  ER A+N PIQGSAADI + AM+ V++  +   L
Sbjct: 756 GYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNL 815

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++LQ+HDELV +  ++E+    +I+  +ME      I L+VPL V I V  NW
Sbjct: 816 KSRLILQVHDELVVDTYKDELELVKEILKENMENV----IKLKVPLVVEIGVGPNW 867



 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 174/286 (60%), Gaps = 10/286 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             L+DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KLL+  +      + A+ FD
Sbjct: 4   FLLIDGSSLMYRAYYALPMLT-TSEGLHTNALYGFTMMLIKLLEEEK----PDYVAIAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ + +YKA R  +PE L  Q+ L++     F I  +E++G+EADDII T + 
Sbjct: 59  KKAPTFRHKEFKEYKATRQAMPEELSEQVELLKEVIDGFNIKTLELEGYEADDIIGTVSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++G  V I++ D+D +QL+SP   +  + K     E+ D + V++++ I P++ V L
Sbjct: 119 MAEEKGMEVVIVTGDRDALQLISPRVKVKISKKGITQMEEFDEKAVLERYEITPQQFVDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPGIP IG KTA  LL+E+G++EN+L N S++   K +E I    E A +
Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLENISKL-SGKIKETIEANRELAVM 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           S++L  +  ++P+ I  E   L++ N  +L      LEF  L++ +
Sbjct: 238 SKRLATINRNIPLEIDFEEYRLKEFNYKKLWDLFNKLEFYSLLDSI 283


>gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score =  367 bits (943), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/479 (40%), Positives = 306/479 (63%), Gaps = 15/479 (3%)

Query: 499 GRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
            +++ D+A++A+  ++ +    E +  K  K ++P     +  + EH +  +  I  L  
Sbjct: 404 AQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKRTVP----DEPTLAEHLVRKAAAIWALEE 459

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            L  +L   +   +   L++P+  +++ ME TG+++D   L+Q+ AE+++ L ++E  IY
Sbjct: 460 PLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIY 519

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           +L+G++FN++SPKQLG +LF KL+ P   KTKTG + T+A  LE++    + I+++IL +
Sbjct: 520 ELAGQEFNINSPKQLGTVLFDKLQLPVLKKTKTG-YSTSADVLEKL-APHHEIVEHILHY 577

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQL K++STY + L   ++  T +VHT ++ A T TGRL+S+EPNLQNIPI+ + G+KIR
Sbjct: 578 RQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIR 637

Query: 735 RAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           +AF+ S P   + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ E V
Sbjct: 638 QAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +  MRR AK +NF I+YGIS + LA  L I R EAA++I+RYF  FPG+ +Y++      
Sbjct: 698 TANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI +   L +
Sbjct: 758 KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRLRE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +L  ++LLQ+HDEL+ E P+EEI    +++   ME+A    + LRVPLKV+      W
Sbjct: 818 ERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQA----VTLRVPLKVDYHYGPTW 872



 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/294 (40%), Positives = 177/294 (60%), Gaps = 9/294 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H  V
Sbjct: 2   KNKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTHILV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + DYK  R + P  L  Q PL+R   +A+ IPA E+  +EADDII T
Sbjct: 57  AFDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGFAV +IS D+DL QL SP   +  T K     E    E V++K+G+ PE++
Sbjct: 117 MAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +Y + 
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A LS++L  +  D P+ + L+ ++ +  +  ++++  + L F   ++++A   D
Sbjct: 237 ALLSKQLAAICRDAPVELTLDDIVYKGEDREKVVALFQELGFQSFLDKMAVQTD 290


>gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form).
 gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form)
          Length = 580

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 195/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +N+ I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
 gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
          Length = 580

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 195/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +N+ I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
 gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
          Length = 885

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 213/552 (38%), Positives = 343/552 (62%), Gaps = 28/552 (5%)

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIM 490
           +V+ S D +    LTK+ L  L    E++   K   ++K   + LHR GI       D++
Sbjct: 351 NVYVSNDVS---LLTKQPLQTL---LEDQAVNKNVFDLKRTIVGLHRLGIKANNINYDML 404

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENS 546
           L SY++++  +S+D+  I Q +  Y  +  +    K +K++IP ++I  + +    +   
Sbjct: 405 LASYLVNNENNSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDEEIFFNHLAGKVL--- 461

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
             I  L   L  +L   +   +YE ++ P+ +V+++MEITG++ D   L Q+  +  + L
Sbjct: 462 -AIEALKPTLLKRLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRL 520

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             LE +IY  +GE+FN++SPKQLG ILF KL+ P   KTKTG + T+ + LEQ+    +P
Sbjct: 521 TELEADIYLEAGERFNINSPKQLGQILFEKLELPPIKKTKTG-YSTSVEVLEQLK-DQSP 578

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I++ +L++RQ++KI+STY   L + I +   RVHT Y    T TGRL+S++PNLQNIP++
Sbjct: 579 IVQKVLDYRQIAKIQSTYVKGLLDVI-QPDGRVHTRYQQTLTATGRLSSVDPNLQNIPVR 637

Query: 727 TDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            + G+KIR+AFI  P+ K   + S DYSQ+ELR+LAH++    + + F+   DIH   A 
Sbjct: 638 LEEGKKIRKAFI--PSNKDGYIFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAM 695

Query: 784 EIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R +A ++I  YF ++P I
Sbjct: 696 KIFHLDSPDEVTPNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPKI 755

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y++K  NF R+ GYVETI  RR +  +I++   ++R+  ER AIN+PIQG AADI + 
Sbjct: 756 KDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGGAADIIKI 815

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K L++  L +KML+Q+HDEL+F+VP +E+ T  +++   M+ A    ++L VPL
Sbjct: 816 AMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNA----VHLDVPL 871

Query: 963 KVNIKVSNNWQE 974
             +    ++W E
Sbjct: 872 VADSNWGHDWYE 883



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 165/289 (57%), Gaps = 17/289 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L R+ D      GL  NAI  F NML  +L    K+   SH
Sbjct: 6   LLLIDGNSVAFRAFYA---LYRQLDRFQNPEGLHTNAIYAFKNMLDVIL----KQENPSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y DYK  R K P  LL Q+P ++   +  GI + E+  +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKLYSDYKGGRQKTPGELLEQIPYIKEMLKDLGIKSYELVNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKE-EKIDIEHVIKKWGIPP 176
           I TY+ + E+ G+ V I+S DKDL QL S +T +Y T   V E E    EH+ +  G+ P
Sbjct: 119 IGTYSKMGEEAGYQVAIVSGDKDLTQLASDSTTVYVTKSGVSELEAFTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++ENI  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASNLIQKYGSVENIYKHIDEMKKSKLKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            + A L++ L  +    P+   L+ L  ++ N   L  F + + F + +
Sbjct: 239 KDKAFLAKTLATIDRTSPVEFKLDELKKQETNVVDLRKFYEQMNFRRFL 287


>gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
 gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 195/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +N+ I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna (Open Form)
          Length = 580

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 195/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +N+ I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
 gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
          Length = 885

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 322/527 (61%), Gaps = 16/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+    K   N K   + LHR GI +R  + D++L SY+L++  +S+D+  +A +
Sbjct: 364 LKKLLESPAVAKNVFNAKAQIVGLHRLGIDLRNVDFDLLLASYLLNTNDNSNDLGQVALE 423

Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +   T +E+  K  K +IP D   D     H  + +  I  L   L  KL   +   
Sbjct: 424 HDYHEVATDEEVYGKGAKRAIPAD---DQVFYTHLAQKARAIDDLRAPLFKKLDDNQQTP 480

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y  ++ P+  V++ MEITGI+++   LK + +++++ L  +E  IY  +GE+FN++S K
Sbjct: 481 LYTDIEVPLTRVLAAMEITGIKVNAQTLKDMGSKLTERLADIESQIYAAAGEEFNINSTK 540

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KLK P   KTKTG   +TA D+ +      PI+++IL++RQ++K++STY   
Sbjct: 541 QLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADQAPIVEDILQYRQIAKLQSTYITG 598

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   I+   Q++HT Y    T TGRL+S++PNLQNIP++   G+ IR+AF+ S    ++ 
Sbjct: 599 LLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHAGWQIF 658

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805
           S+DYSQ+ELR+LAHI     L + F+N  DIH   A  IF +  + ++   MRR AK +N
Sbjct: 659 SSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVN 718

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + LA ++ + R++A ++I+ YF  FPG+ +YI+ T  F R++GYVETI  R
Sbjct: 719 FGIVYGISDYGLAQRIHVSRAQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVETITHR 778

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++   S R+  ER A+N PIQGSAADI + AMI + + ++  +L  +MLLQIH
Sbjct: 779 RRYLPDIHAKSFSRRSFAERTAMNTPIQGSAADIIKIAMIRMKEEIKQRQLQARMLLQIH 838

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DELVFE P EEI    +++   M+ A    + L VPLKV  KV + W
Sbjct: 839 DELVFEAPAEEIPVLQKLVPQVMDSA----VQLNVPLKVESKVGDTW 881



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 160/303 (52%), Gaps = 11/303 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S ++RAF+A      K    DGL   AI GF  ML  +L     ++      V
Sbjct: 5   LLLIDGNSIVFRAFFAMHNQIDKFTNKDGLHTAAIYGFKLMLDHVLDQFHPDAAL----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y DYK  R K P+ L  Q P VR   +A G+ + E++ +EADDII T
Sbjct: 61  AFDAGKVTFRTKMYDDYKGGRNKTPDELTEQFPYVRELVEACGLHSYELKNYEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179
                ++ G+   I++ D+DL QL S  T +  T K     E     HV +K GI P ++
Sbjct: 121 LAKEGDEAGYETLIVTGDRDLTQLASDHTTVAVTHKGVTDTEHYTPAHVEEKLGITPRQI 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+  IG KTA  L++++G++EN+  +   +K+ K +E+++E    
Sbjct: 181 IDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVENLYDHIDELKKSKMKEHLVEDEAI 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           AR  + L  +  D P+ I L+ +         L++F + + F   + ++    +  A   
Sbjct: 241 ARECKTLATILQDAPLEIGLDDITYRGEQTEELVAFYQQMGFKSFLAKMDLAPEEKADKS 300

Query: 300 EPV 302
            PV
Sbjct: 301 APV 303


>gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
 gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
          Length = 884

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 204/518 (39%), Positives = 318/518 (61%), Gaps = 18/518 (3%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTR--KE 519
           K GH++    L LH +GI   G E D+ L  Y+LD   ++  ++ +A K+ LS  R  +E
Sbjct: 376 KRGHDLHRTDLALHWHGIEFAGAEFDVQLAGYLLDPTDANQTLSGLAAKYGLSSIRPDEE 435

Query: 520 IL-KSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           +  K  K  +P +D +SD     H    + VI  L  + + +L   ++  ++  L+ P+ 
Sbjct: 436 VFGKGAKYKVPDVDVLSD-----HVARKAAVIEALVPVQQAELEKTEMHKLFHELEMPLS 490

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            +++ ME  G+ ++ + L+ +  E    + +L   IY ++G +FNL+SPKQLG+ILF KL
Sbjct: 491 RILADMEKQGVLVNVEELRALGKEFEAQIATLVSEIYSIAGVEFNLNSPKQLGEILFDKL 550

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
             P   KTKTG + T A+ LE++    + I++NIL++R ++K++STY + L   I+ +T 
Sbjct: 551 GLPVIKKTKTG-YSTDAEVLEKL-APYHDIVQNILQYRTIAKLQSTYVEGLLKEISGKTG 608

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756
           +VHT++      TGRL+S  PNLQNIPI+ + G+KIR+ F+ S P   +++ADYSQIELR
Sbjct: 609 KVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAADYSQIELR 668

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LA I+    L + F + +DIH   A+++FGV  E V   MRR AK +NF I+YGIS + 
Sbjct: 669 VLADISDDERLKEAFVHDMDIHTKTASDVFGVAAEDVDSNMRRSAKAVNFGIVYGISDYG 728

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L I R EAA +I +YF  F G+  Y++      +++GYV+T+  RR +  EIN+  
Sbjct: 729 LSQNLNITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASN 788

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            ++R+  ER A+N PIQG+AADI + AM+ + K L +  L ++MLLQ+HDELVFEVP EE
Sbjct: 789 FNLRSFAERTAMNTPIQGTAADIIKLAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEE 848

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + T  +++  +ME A    + L VPLK  +   +NW E
Sbjct: 849 METMKELVPATMEAA----LELAVPLKAEVSYGSNWYE 882



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 173/312 (55%), Gaps = 17/312 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S IYRAF+A P L+    G   NA+ GF  ML +LL+  +     +H  V 
Sbjct: 2   DKLMLIDGNSIIYRAFFAMPPLTNS-SGQQTNAVYGFTTMLLRLLEEHK----PTHILVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   +TFR++ Y DYK  R K P  L  Q PL++    AFGI   E+ G+EADDII T 
Sbjct: 57  FDAGKITFRHKGYEDYKGGREKTPPELSQQFPLLKELLTAFGIAQFELDGYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++ GF V I++ DKD++QL S    +  T K     E    E + +++G+ P +++
Sbjct: 117 SKTADEAGFNVLIVTGDKDMLQLASDHVTVGLTRKGVTEVETYGPEQIQERYGLKPLQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPGIPG+G KTA  LL +YG++E +L + + +K  K +E +  +A+ A
Sbjct: 177 DLKGLMGDTSDNIPGIPGVGEKTALKLLHQYGSVEEVLAHTNELK-GKMKERVETHADDA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-------ATTYD 293
           R+S+ L  +  DV +   L+ +             L  LEF  L+ R+       +T  D
Sbjct: 236 RMSKDLATIYRDVTLDKQLDDVAFGGLQAETAGPALAKLEFKSLLERLSFSGEVGSTGVD 295

Query: 294 CDAANIEPVVLD 305
            + A  +  VLD
Sbjct: 296 VEEAAADVTVLD 307


>gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5]
 gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5]
          Length = 871

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 194/487 (39%), Positives = 298/487 (61%), Gaps = 22/487 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ + +Y+L+  ++++D   +A++ L              + ID+ +D  V   A   + 
Sbjct: 405 DVTVAAYLLNPLKNNYDYEDVAREQLG-------------LMIDEKAD--VMTKACYEAY 449

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
                   LR K+  E + H++  ++ P++  +  ME  GIQ++ + LK    ++   ++
Sbjct: 450 TAFAAVKPLRDKMQAEGMYHLFTDIEMPLVFTLFDMEQAGIQVEAEALKFYGEQLGGRIV 509

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            LE+ IY+++GE FN++SPKQLG +LF  ++ P+G KTKTG + T A  L+++   D P+
Sbjct: 510 ELEKEIYEMAGETFNINSPKQLGVVLFDHMQLPNGKKTKTG-YSTAADVLDKL-APDYPV 567

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ ILE+RQL+K+KSTYAD L  +I     R+H  ++   T TGR++S EPNLQNIP++ 
Sbjct: 568 VEKILEYRQLTKLKSTYADGLAVYIGA-DGRIHGKFNQTITATGRISSTEPNLQNIPVRM 626

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           +LG+ IR+ F+       I ADYSQIELRILAH +    L Q ++++ DIHRM A+++F 
Sbjct: 627 ELGRLIRKVFVPKEGYVFIDADYSQIELRILAHCSGDEQLIQAYKDARDIHRMTASQVFH 686

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
              E+V+   RR+AK +NF I+YGIS F L+  L I R EAA YI+ YF  +PGI  +++
Sbjct: 687 TPFEEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAQYIENYFETYPGIKRFLD 746

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
            T    ++ GYV T+FGRR    E+ S     RN  ER A+NAPIQGSAADI + AMI V
Sbjct: 747 DTVAHAKEEGYVVTLFGRRRPVPELKSSNFMQRNFGERVAMNAPIQGSAADIMKIAMIGV 806

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           ++ L++  L ++M+LQ+HDEL+ E   EEI    +I+   ME+A     +L VPL V++ 
Sbjct: 807 NRELKEKGLRSRMILQVHDELLIEAHREEIGEVQEILKRQMEQAA----DLDVPLIVDMH 862

Query: 968 VSNNWQE 974
              NW E
Sbjct: 863 TGENWYE 869



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/287 (35%), Positives = 162/287 (56%), Gaps = 11/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NAI GF N+++K+L   + E    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGVPDLTNS-EGLHTNAIYGFLNIMFKILDEEKPE----YLTVTFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E+Y DYK  R  + E L  Q+P+++   QA  I  IE  G EADD++ T ++
Sbjct: 60  VHAPTFRHEMYADYKGTRKPMAEELRQQVPVIKEVLQAMNIEIIEQAGLEADDLLGTISH 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPEKMV 180
           I E++G  V IIS D+D +QL +    +     K+ + ++E      V +K+G+ P + +
Sbjct: 120 ICEEKGMDVAIISGDRDTLQLATEHVKIRIPKTKQGRTEVEDYYAADVKEKYGVTPTEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GD+ DNIPG+PG+G KTA  ++ EYG +EN   +A  IK  +  +N+ EY + A
Sbjct: 180 DVKALMGDASDNIPGVPGVGEKTATKIIVEYGTIENAYAHAEEIKPPRASKNLQEYWDQA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +S+ L  + T   I   LE     +        + + L+F  L++R
Sbjct: 240 CMSKTLATINTHADIAFNLEAAEHGNPYTKEAHDYFQRLQFKNLLSR 286


>gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10]
          Length = 887

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 325/527 (61%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR GI   G + D++L SY++++  +S+D+  IA  
Sbjct: 367 IKHILEDEKIKKNVFDLKRSMVGAHRLGIHTHGLDYDMLLASYLVNNENNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +   IP D   D ++  H     N I  L   L  KL   +   
Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++MEI G++++   L Q+  E +  L  LE+ IY  +GE+FNL+SPK
Sbjct: 484 LFDTIEIPTARVLAKMEINGMKVEASTLIQLQNEFAVKLQDLEKKIYQQAGEEFNLNSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+K IL++RQ++KI+STY   
Sbjct: 544 QLGHILFEKLGLPVLKKTKTG-YSTSVEVLDQLKT-QSPIVKEILDYRQIAKIQSTYVKG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSDPDGYIF 660

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF ++  +KV+P MRRHAK +N
Sbjct: 661 SCDYSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAMKIFHLDSPDKVTPLMRRHAKAVN 720

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R +A ++I  YF ++P I +Y++K     R+ GY ETI  R
Sbjct: 721 FGIVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHR 780

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R   ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 781 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 840

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 181/331 (54%), Gaps = 21/331 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    EK GF  TI++ D+DL QL S  T +  T     + E    EH+ +  G+ P + 
Sbjct: 122 FAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++   + 
Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L++KL  +  D P+TI ++ +  E  +  +L  F + + F K +  + A+    D A 
Sbjct: 242 AFLAKKLATIDRDSPVTIDIDDVKREPVDYEKLWQFYEKMNFRKFLAELNASGAGQDGAE 301

Query: 299 IEPV---------VLDINTTENKGIAIETEI 320
           +E V         V D+  TE   +    E+
Sbjct: 302 VEKVEYTVLNDDNVKDVKATEKDTVEFYLEM 332


>gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
 gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
          Length = 877

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 321/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            KK+  ++   K   + K   + L   GI ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 358 FKKWLADDEMRKYTFDAKRAIVALKWKGIEIQGIDFDLLIAAYLLDPADTDKDFRAVAKM 417

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P   I    V EH     +V+  +      +L   +   
Sbjct: 418 KETHAVKSDEEVYGKGAKRAVPAQDI----VAEHVARKVHVLYDVQKTFVEELQKNEQYE 473

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V+++ME+ G+ +D + L+ +  E++  L  +E+ IY+L+G +FN++SPK
Sbjct: 474 LFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGTEFNINSPK 533

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II  IL +RQL K+ STY + 
Sbjct: 534 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MEHHEIIPKILHYRQLGKLNSTYIEG 591

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AFI  P+K+   
Sbjct: 592 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFI--PSKEGWV 649

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIAK   L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 650 MYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 709

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  A ++I++YF  FPG+ EY+++     +Q GYV T+  
Sbjct: 710 NFGIVYGISDYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLN 769

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 770 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 829

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FEVP+EE+    +++   ME A    I L VPLKV+      W
Sbjct: 830 HDELIFEVPKEEVEKLEKLVPEVMEHA----IELAVPLKVDYSSGPTW 873



 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 176/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS TT  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +EN+    E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDKVSGKKLKENLEMNKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S++L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 237 AFMSKELATIITDAPITVHVDDIEYKGYEASDVIPMFENLGFTSLLNKLGATPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDISFDI 304


>gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 884

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 201/508 (39%), Positives = 313/508 (61%), Gaps = 16/508 (3%)

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
           +L L   GI +RG   D++L SY+LD   S+  ++ +A K+    L    +   K  K  
Sbjct: 385 QLALSWKGIKLRGVSFDVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQVFGKGAKFK 444

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P + +    + E+    +  + +L  +L+ KL    +  +Y  L+ P+  V+++ME+ G
Sbjct: 445 LPEEHL----LGENLSLKAERVSRLVPVLKAKLEESGMQELYYELEHPLAGVLAEMELAG 500

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D++ LKQ+  EIS  L ++ + IY+ +G  FN++SPKQLG++LF KL+ P   KTKT
Sbjct: 501 IKVDKESLKQLGTEISDQLKTIMDRIYEQAGMTFNINSPKQLGEVLFEKLQLPVQKKTKT 560

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T A+ LE++    + I+ +IL +R L+K++STY + L   +   T +VHT+Y    
Sbjct: 561 G-YSTDAEVLEKL-APYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTI 618

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITP 766
             TGRL+S  PNLQNIPI+ + G+KIR+ F+ S P   +++ADYSQIELR+LAHI+    
Sbjct: 619 AATGRLSSQYPNLQNIPIRLEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 678

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F   +DIH   A ++FGV+  +V   MRR AK +NF I+YGIS + L+  L I R 
Sbjct: 679 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 738

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA+ +I++YF  F G+  Y++      +  GYV T+  RR +  EIN+   ++R+  ER 
Sbjct: 739 EASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQRRRYLPEINASNYNLRSFAERT 798

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQG+AADI + AM+ + + L+  KL + MLLQ+HDEL+FEVPE+E+ T  +++  
Sbjct: 799 AMNTPIQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPE 858

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME+A    + L VPLKV +    NW E
Sbjct: 859 VMEQA----LALDVPLKVEVDEGENWYE 882



 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/287 (40%), Positives = 176/287 (61%), Gaps = 12/287 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S   RAFYA PLLS    GL  NA+ GF  ML +L++  +     +HF V FD
Sbjct: 4   LIIIDGNSIANRAFYALPLLSNS-SGLHTNAVYGFTTMLLRLIEEEK----PTHFLVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              VTFR++ Y +YK  R K P  L  Q PL++    AFGI   E++G+EADDII T T 
Sbjct: 59  AGKVTFRHKEYKEYKGGRAKTPSELSEQFPLIKELLNAFGIRQFELEGYEADDIIGTLTR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181
            A+++   V ++S DKD++QL S    +  T K    ++EH     + +K+G+ PE+++ 
Sbjct: 119 AADEKKKHVMLVSGDKDMLQLASDYVTVAITRKGIS-EVEHYGPKEIEEKYGLKPEQIID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GDS DNIPGIPG+G KTA  LL EYG++E++L +A  +K  K +E + E A+ AR
Sbjct: 178 MKGLMGDSSDNIPGIPGVGEKTALKLLHEYGSVESVLEHADELK-GKMKEKVKENADLAR 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +S++L  +  +VP++   + L+ E   GP+L    + LEF  L+ ++
Sbjct: 237 MSKELATIFREVPMSTEWDELVYEGYEGPKLQEMFRKLEFKSLLEKL 283


>gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 863

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 283/964 (29%), Positives = 468/964 (48%), Gaps = 116/964 (12%)

Query: 17  YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           +RAFYA P  +     G   NA+ GF +ML  ++   + E    +  V FD    TFR E
Sbjct: 3   FRAFYALPAENFATSGGQHTNAVYGFLSMLANIIAEEKPE----YVGVAFDVGRKTFRTE 58

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
           ++P+YKA R   PE    Q+ L+R      GI  +  + FEADDI+AT    A    F  
Sbjct: 59  MFPEYKAQREAAPEEFRGQVDLIREVLGTLGITTLSRENFEADDIVATLATQATD--FET 116

Query: 136 TIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
            I++ D+D +QLV+  TT LY                   P   +  L   T D++    
Sbjct: 117 LIVTGDRDYLQLVNEDTTVLY-------------------PMRGVSTLHRFTPDAVVEKY 157

Query: 195 GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP 254
           G+    Y   A L    G+  + L +  ++ +K   + ILEY     L            
Sbjct: 158 GLTPRQYPDFAAL---RGDPSDNLPSVPKVGEKTATKWILEYGSLEGL------------ 202

Query: 255 ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGI 314
               +EH   ED  G    +F   +E  ++ NR  T    D  ++E    D+   + KG 
Sbjct: 203 ----IEHA--EDIKGVAGQNFRDRIEQVRM-NRKLTQMITDM-DLEVTPADL---QFKGA 251

Query: 315 AIETEIDRDTTIKTSQF--SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
           A+    +R   ++        + D       E   Q          ++ P      T+IV
Sbjct: 252 AVSEVAERFDALEFGGGLRERVLDAIPNDGGEAPAQ----------TEVPTQE---TEIV 298

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +   ++QW++                      K +A+ +   D + D         +D  
Sbjct: 299 DAP-LKQWLKG--------------------KKDVAVFVQG-DGRPDRGDASAIALVDAD 336

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIML 491
            H  Q   G+  L+ E  + L ++  N    K  H  K    +L   GI +RG   D  +
Sbjct: 337 FHGMQLELGE--LSAEDDAALAQWL-NSDAPKYFHEAKAAFHMLAGRGIELRGIAHDTAI 393

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +Y+L  G+ +++++ + Q+ L  T  +      +S  +  + D+ +    ++ +  I++
Sbjct: 394 AAYLLRPGQRTYELSDVYQRHLKKTLGQ------ASDQLSLLDDTSL----VDQAAAIME 443

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L   L  +L       +Y  L+ P++ ++++ME TGI +D ++L+       + +   E 
Sbjct: 444 LAAELTKQLQAIDSFELYTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAEQER 503

Query: 612 NIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NPIIK 669
              +L+G+   NL+SPKQL  +LF   + P   KTKTG + T A+++EQ+     +P + 
Sbjct: 504 AARELAGDDSLNLNSPKQLQAVLFETFEMPKTKKTKTG-YSTAAKEIEQLAVNHPHPFLD 562

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+S EPNLQNIP++T+ 
Sbjct: 563 HLLAHREYQKMKTTL-EGLIKTVQP-DGRIHTTFNQTVASTGRLSSTEPNLQNIPVRTEA 620

Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G++IR AFI     + L++ADYSQIE+R++AH+++   L + +    D+H  V +++F V
Sbjct: 621 GRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLHNYVGSKVFDV 680

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
            +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA + ++ YF RF G+  Y++ 
Sbjct: 681 PVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAREAKEIMENYFERFGGVKRYLDN 740

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
                R++GY  T+FGRR +  E+NS     R   ERAA+NAPIQG+AADI + AMI V 
Sbjct: 741 VVEKARKDGYTATVFGRRRYLPELNSDNRLARENAERAALNAPIQGTAADIIKVAMIRVD 800

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            +L D  L +++LLQ+HDELV EV   E     +I+   M+ A    I L VPL+V+   
Sbjct: 801 NALRD--LKSRVLLQVHDELVVEVAPGEADEVKKILEREMDSA----IELTVPLEVSAGA 854

Query: 969 SNNW 972
             +W
Sbjct: 855 GKDW 858


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 212/536 (39%), Positives = 331/536 (61%), Gaps = 24/536 (4%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDI 505
           E L  L+K FE E    + H IK D LV   Y GI  +  + D  +M+Y+L+   S++D+
Sbjct: 345 ERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDL 403

Query: 506 ASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL---WLLLRPK 559
             + +++L     + +E+    K     +++S+  + E+     + + +L    +    +
Sbjct: 404 ERVLKRYLKVDILSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEE 463

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           + ++KLL     ++ P+++V+  ME+ G  +D+++LK++S +I + +  + + IY  +G 
Sbjct: 464 MDMKKLLL---EIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGY 520

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SPKQLG+ LF KL  P   KTKTG + T ++ LEQ+    N I+  I+E+RQL+K
Sbjct: 521 QFNVNSPKQLGEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLTAY-NDIVSEIIEYRQLTK 578

Query: 680 IKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           +KSTY +  LP  +     RVH+ +      TGR++S EPNLQNIP++ + G++IRRAFI
Sbjct: 579 LKSTYIEGFLP--LMDENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFI 636

Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            P TK   ++SADYSQIELR+LAH+++   L + F N+ DIH   A+E+F V  + V+P+
Sbjct: 637 -PRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPE 695

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MRR AK +NF IIYGIS + LA  L+I R EA +YI  YF ++ G+ EYIEK   F ++N
Sbjct: 696 MRRAAKVVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKEN 755

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYV TI  RR +  EINS   + R+  ER A+N PIQGSAADI + AM+ V++  +   L
Sbjct: 756 GYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNL 815

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++LQ+HDELV +  ++E+    +I+  +ME      I L+VPL V I V  NW
Sbjct: 816 KSRLILQVHDELVVDTYKDELELVKEILKENMENV----IKLKVPLVVEIGVGPNW 867



 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 174/286 (60%), Gaps = 10/286 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             L+DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KLL+  +      + A+ FD
Sbjct: 4   FLLIDGSSLMYRAYYALPMLT-TSEGLHTNALYGFTMMLIKLLEEEK----PDYVAIAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ + +YKA R  +PE L  Q+ L++     F I  +E++G+EADDII T + 
Sbjct: 59  KKAPTFRHKEFKEYKATRQAMPEELSEQVELLKEVIDGFNIKTLELEGYEADDIIGTVSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++G  V I++ D+D +QL+SP   +  + K     E+ D + V++++ I P++ V L
Sbjct: 119 MAEEKGMEVVIVTGDRDALQLISPRVKVKISKKGITQMEEFDEKAVLERYEITPQQFVDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPGIP IG KTA  LL+E+G++EN+L N S++   K +E I    E A +
Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLENISKL-SGKIKETIEANRELAVM 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           S++L  +  ++P+ I  E   L++ N  +L      LEF  L++ +
Sbjct: 238 SKRLATINRNIPLEIDFEEYRLKEFNYKKLWDLFNKLEFYSLLDSI 283


>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
          Length = 876

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 205/528 (38%), Positives = 320/528 (60%), Gaps = 22/528 (4%)

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW 512
           +++  +E   K+ ++ K   + L R G+ + G   D +L +Y+++  ++  D AS+ +++
Sbjct: 358 QEWLRDESKEKVVYDAKKSIVALKRQGLELNGVSFDSLLAAYIINPAQNHEDFASVGKEY 417

Query: 513 -LSYTRKE---ILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            LS  + +     K  K ++P +D +S     EH    ++++  L   L+  L       
Sbjct: 418 GLSSVQSDEQVYGKGAKQAVPNLDALS-----EHVARKASMLWDLTEKLKTALKENHQDA 472

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  ++ +ME  G+++D+  L  +  E+   L  LEE IYDL+GE FN++SPK
Sbjct: 473 LFFDLELPLAFILGEMEYQGVKVDRTRLTSMGKELGGKLKELEEKIYDLAGETFNINSPK 532

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL+ P   KTKTG + T+A  LE++    + I++ IL +RQL K+ STY + 
Sbjct: 533 QLGVILFEKLELPVIKKTKTG-YSTSADVLEKLQS-KHEIVEYILHYRQLGKLNSTYIEG 590

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   I++ + +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+K+   
Sbjct: 591 LLKVIHEDSDKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSKEGWV 648

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHI+    L + F+   D+H   A E+F V+ + V+ +MRRHAK +
Sbjct: 649 IFAADYSQIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAV 708

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS F L+  L I R EA ++I+RY   +P + EY+E      R  GYV T+  
Sbjct: 709 NFGIVYGISDFGLSQSLNITRKEAGEFIERYLDTYPAVKEYMEDIVVEARDKGYVSTLLN 768

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  E+ S   ++R+  ER A+N PIQGSAADI ++AMI + K LE+  +  K+LLQ+
Sbjct: 769 RRRYIPELTSRNFNLRSFGERTAMNTPIQGSAADIIKQAMIDMAKRLEEENIEAKLLLQV 828

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+ EI     ++   ME A    + L VPLKV+      W
Sbjct: 829 HDELIFEAPQSEIEKLKTMVPDVMENA----VELNVPLKVDFAFGPTW 872



 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 164/285 (57%), Gaps = 9/285 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  YRAF+A PLL+    G+  NAI GF  ML K+++  +     +H  V FD
Sbjct: 6   LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAIYGFTTMLMKIMEEEK----PTHVLVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E + +YK  R K P  L  Q P +R   +A+GI   E+  +EADDII T + 
Sbjct: 61  AGKTTFRHETFTEYKGGRQKTPPELSEQFPFIRELLKAYGISHYELPNYEADDIIGTLSK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE++GF+V +IS DKDL QL S  T +  T K     E+   EH+ +KW I   +++ +
Sbjct: 121 KAEQDGFSVKVISGDKDLTQLASEHTTVMITKKGITDMEEYTPEHIREKWEIDVSQIIDM 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  KK +E + E  E A +
Sbjct: 181 KGLMGDSSDNIPGVPGVGEKTAIKLLKQFSSIEQLLESIDEVSGKKLKEKLEENKEQAVM 240

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           S+KL  + TD P+ I LE +  E      L    K L F  L+ +
Sbjct: 241 SKKLATIMTDAPVEITLEEVFYEGIVDEELQMLFKELGFQSLLEK 285


>gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
          Length = 817

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 309/511 (60%), Gaps = 35/511 (6%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           LKI HNIK  + +       +   +D+M+MSY LD+G+  H I +I    LS    EI  
Sbjct: 320 LKIIHNIKEIRKIFPATEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLS-ENAEIF- 377

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           S K+ I I +                       L+ +L  EKL  +YER DKP++ V+  
Sbjct: 378 SAKTLIAIHE----------------------KLKQRLFQEKLFTIYERFDKPLMKVIFD 415

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI ++   L+++S +  + +  LE+ IY+L+GE+FN++SPKQL D+LF K+     
Sbjct: 416 MEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKK 475

Query: 643 AKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            K+K     +T  + LE +      I   IL WR LSK+K TY D+L   ++    R+HT
Sbjct: 476 KKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHT 535

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +S  +T TGRL+S  PNLQNIPI+++ G  IR+AFI+P   K+ISADYSQIELR+LAH+
Sbjct: 536 SFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHV 595

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A +    + F N  DIH + A ++FGV  +++  Q+RR AK+INF IIYGISPF LA +L
Sbjct: 596 ANVAAFKEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRL 653

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I  +EAA+YI  YF  +P I  Y+EK  +  R +GYVET+FGRR    +IN+    +R 
Sbjct: 654 GITIAEAAEYINYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYVRQ 713

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ERAAINAP+QG+AADI +RA I +   L+      K++LQ+HDEL+ EV +E++   +
Sbjct: 714 FAERAAINAPLQGTAADIIKRATIQLFDQLK----VGKIILQVHDELLVEVEDEKVQETA 769

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +++   ME A    I + VPL+V IKV +NW
Sbjct: 770 KLMKDIMENA----IEISVPLEVEIKVGDNW 796



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 146/242 (60%), Gaps = 1/242 (0%)

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           + +  +  D     FR+++YP+YKANR   PE L PQ  ++R A +AF +   EI+G+EA
Sbjct: 9   SDYLTIALDAGKKNFRHDLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEA 68

Query: 118 DDIIATYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           DDIIAT     A  + F V ++S+DKDL QL++    ++D +K   ID + +++K+G+  
Sbjct: 69  DDIIATLAAKYANHQDFKVVVVSSDKDLFQLLNYNILIFDPIKNIYIDEKQIVEKFGVNS 128

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            K++ L +LTGD+ DNIPG+PGIG KTA  LL E+ +L NI+ N   I+Q + R  + E+
Sbjct: 129 NKLLDLFSLTGDASDNIPGVPGIGPKTATKLLDEFDSLNNIIENIDNIEQTRIRNILAEH 188

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A +SR+L+ L   V +   +    +   N  +L+SFLK  EF  LI ++   +  + 
Sbjct: 189 KEKALISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKMEKLFSYNG 248

Query: 297 AN 298
           ++
Sbjct: 249 SS 250


>gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi]
 gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi]
          Length = 858

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 309/511 (60%), Gaps = 35/511 (6%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           LKI HNIK  + +       +   +D+M+MSY LD+G+  H I +I    LS    EI  
Sbjct: 361 LKIIHNIKEIRKIFPATEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLS-ENAEIF- 418

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           S K+ I I +                       L+ +L  EKL  +YER DKP++ V+  
Sbjct: 419 SAKTLIAIHE----------------------KLKQRLFQEKLFTIYERFDKPLMKVIFD 456

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI ++   L+++S +  + +  LE+ IY+L+GE+FN++SPKQL D+LF K+     
Sbjct: 457 MEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKK 516

Query: 643 AKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            K+K     +T  + LE +      I   IL WR LSK+K TY D+L   ++    R+HT
Sbjct: 517 KKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHT 576

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +S  +T TGRL+S  PNLQNIPI+++ G  IR+AFI+P   K+ISADYSQIELR+LAH+
Sbjct: 577 SFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHV 636

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A +    + F N  DIH + A ++FGV  +++  Q+RR AK+INF IIYGISPF LA +L
Sbjct: 637 ANVAAFKEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRL 694

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I  +EAA+YI  YF  +P I  Y+EK  +  R +GYVET+FGRR    +IN+    +R 
Sbjct: 695 GITIAEAAEYINYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYVRQ 754

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ERAAINAP+QG+AADI +RA I +   L+      K++LQ+HDEL+ EV +E++   +
Sbjct: 755 FAERAAINAPLQGTAADIIKRATIQLFDQLK----VGKIILQVHDELLVEVEDEKVQETA 810

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +++   ME A    I + VPL+V IKV +NW
Sbjct: 811 KLMKDIMENA----IEISVPLEVEIKVGDNW 837



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/297 (37%), Positives = 175/297 (58%), Gaps = 8/297 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE    ++DG  F++RA+Y  P L     G+P+  + GF NM+ K + +S   +IA    
Sbjct: 2   KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHSDYLTIA---- 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D     FR+++YP+YKANR   PE L PQ  ++R A +AF +   EI+G+EADDIIA
Sbjct: 57  --LDAGKKNFRHDLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114

Query: 123 TYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T     A  + F V ++S+DKDL QL++    ++D +K   ID + +++K+G+   K++ 
Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNYNILIFDPIKNIYIDEKQIVEKFGVNSNKLLD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L +LTGD+ DNIPG+PGIG KTA  LL E+ +L NI+ N   I+Q + R  + E+ E A 
Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTATKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +SR+L+ L   V +   +    +   N  +L+SFLK  EF  LI ++   +  + ++
Sbjct: 235 ISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKMEKLFSYNGSS 291


>gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
 gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
          Length = 881

 Score =  366 bits (940), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 213/524 (40%), Positives = 307/524 (58%), Gaps = 17/524 (3%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-- 512
           + ++E   K  ++ K   + L+RY  + +G   D++L +Y+LD+  +++DIA +A  +  
Sbjct: 364 WLKDEKRKKFVYDAKRTYVALNRYTTAPKGIAFDVLLAAYLLDTNDTNNDIAGVAAHYGY 423

Query: 513 --LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
             +        K  K  +P D   +     H       I  L   L  +L  +    ++E
Sbjct: 424 DAIQSDEAIYGKGAKKGLPAD---EEDFFAHLARKVAAITNLTPKLTEELAAKNQTALFE 480

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P+  ++++MEITGI++D   L Q+  E ++ L  +EE IY  +GE FNL+SPKQLG
Sbjct: 481 EMELPLSMILAEMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEAGETFNLNSPKQLG 540

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L  
Sbjct: 541 VILFEKMGLPVIKKTKTG-YSTAVDVLEQLKE-QAPIVEDILTYRQIAKIQSTYVEGLLK 598

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            I +   +VHT Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+   T  +I S+D
Sbjct: 599 VI-QGDGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPRETDWVIYSSD 657

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+  T L + F    DIH   A  +FG+   E V+P MRR AK +NF I
Sbjct: 658 YSQIELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGI 717

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + L+  L I R  A  YI  YF ++PG+  Y+E      +  GYVET++ RR +
Sbjct: 718 VYGISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRY 777

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   +IR   ER AIN PIQGSAADI + AMI + K L++ KLA  MLLQ+HDEL
Sbjct: 778 LPDINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDEL 837

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           VFEVPE E+     ++   ME+A    + L VPL  +      W
Sbjct: 838 VFEVPESELPRLDALVKEVMEQA----VALHVPLLTDSNWGKTW 877



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 159/296 (53%), Gaps = 12/296 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M     +N   +   +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNANGLHTNAIYAFHTMF----ENVMAKEQPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR  +Y DYK  R K P     Q+P +R    A G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTAMYEDYKGGRSKTPGEFKEQMPYIRELINALGVQYYELDNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +KE F V ++S D+DL QL +    +  TVK     E     HV +K+ G+ 
Sbjct: 119 IGTLANKVDKELFDVVVLSGDRDLTQLATEHVKVDITVKGVSEIESYTPAHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ ++ L GD+ DNIPG+  IG KTA  LL+EYG++E I  +   +K+ K +EN++ 
Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKKSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
             E A LS++L  +  D PI + ++ L  E  +  +L+ F + + F   ++++  T
Sbjct: 239 DREIAFLSKQLATIDVDAPIEVDVDKLKYEGKDLEKLVPFYQEMNFNSFLDKLQIT 294


>gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
 gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
          Length = 885

 Score =  366 bits (940), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 211/543 (38%), Positives = 337/543 (62%), Gaps = 33/543 (6%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503
           LTK+ L  L    E++   K   ++K   + L+R GI       D++L SY++++  +S+
Sbjct: 361 LTKQPLLSL---LEDQAIAKNVFDLKRTMVGLYRLGIKSHNMNYDMLLASYLVNNENNSN 417

Query: 504 DIASIAQKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEH--AIENSNVILQLWLLLR 557
           D+  I Q +  Y  +  +    K +K++IP + +  + +     AIE          +L+
Sbjct: 418 DLGEICQLYNYYDLQPDIDIYGKGKKAAIPEETVFFNHLAGKVLAIE----------VLK 467

Query: 558 PKLIVEKLLH----VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
           P L+ +   H    +YE ++ P+ +V+++MEITG++ D   L Q+  + ++ L  LE +I
Sbjct: 468 PTLLKKLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFAQRLTELEADI 527

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
           Y  +GE+FN++SPKQLG ILF KL  P   KTKTG + T+ + LEQ+    +PI++ +L+
Sbjct: 528 YLEAGERFNINSPKQLGQILFEKLGLPPIKKTKTG-YSTSVEVLEQLKE-QSPIVQKVLD 585

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           +RQ++KI+STY   L + I +   RVHT Y    T TGRL+S++PNLQNIP++ + G+KI
Sbjct: 586 YRQIAKIQSTYVKGLLDVI-QPDGRVHTRYQQTLTATGRLSSVDPNLQNIPVRLEEGKKI 644

Query: 734 RRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-E 791
           R+AF+ S     + S DYSQ+ELR+LAH++    + + F+   DIH   A +IF ++   
Sbjct: 645 RKAFVPSNSDGYIFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPN 704

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+P MRRHAK +NF I+YGIS + L+  L I R +A ++I  YF ++P I +Y++K  N
Sbjct: 705 EVTPNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPKIKDYMDKEIN 764

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
           F R+NGYVETI  RR +  +I++   ++R+  ER AIN+PIQG AADI + AMI++ K L
Sbjct: 765 FARENGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGGAADIIKIAMINMQKKL 824

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           ++  L TKML+Q+HDEL+F+VP +E+ T  +++   M+ A    + L VPL  +    ++
Sbjct: 825 DELHLKTKMLIQVHDELIFDVPADELETIKKVVPEVMQNA----VQLDVPLVADSNWGHD 880

Query: 972 WQE 974
           W E
Sbjct: 881 WYE 883



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/295 (36%), Positives = 167/295 (56%), Gaps = 17/295 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L R+ D      GL  NAI  F NML  ++    K+   SH
Sbjct: 6   LLLIDGNSVAFRAFYA---LYRQLDRFQNPEGLHTNAIYAFKNMLDVIV----KQENPSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y DYK  R K P  LL Q+P ++   +  GI + E+  +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKLYSDYKGGRQKTPSELLEQIPYIKEMLKDLGIKSYELANYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKE-EKIDIEHVIKKWGIPP 176
           I TY+ + E  G+ V ++S DKDL QL S  T +Y T   V E E    EH+ +  G+ P
Sbjct: 119 IGTYSKMGEDAGYQVAVVSGDKDLTQLASDLTTVYVTKSGVSELEAFTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++ENI  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASNLIQQYGSVENIYKHIDEMKKSKLKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + A L++ L  +    P+ + L+ L  ++ N   L  F + + F + +  + ++
Sbjct: 239 KDKAFLAKTLATIDRTSPVELKLDDLKKQETNTVELRKFYEQMNFRRFLAELNSS 293


>gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
 gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
          Length = 952

 Score =  366 bits (940), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 216/536 (40%), Positives = 317/536 (59%), Gaps = 13/536 (2%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504
           + +I   +K +FE+ +  K+ H+ K    VL    I++ G  +D MLM YVL++   SHD
Sbjct: 425 SAKIFEAVKPWFES-NAPKLFHDAKAAIHVLAAQHIAVNGQIDDAMLMDYVLEA-HLSHD 482

Query: 505 IASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           +  I+ + L     TR E+       +   +           E++  +     +L+ +L+
Sbjct: 483 LVRISARELRRRIPTRDEVSGKGAKRVGWRETPPEDAARFLAESAAALRAAGSVLKARLL 542

Query: 562 V-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
             EKLL VYE +++P++ V+++ME  GI +D  LL Q S E+   +  L E  +  +G  
Sbjct: 543 ADEKLLRVYEDIERPLVGVLARMESAGITVDASLLAQESKELGVEVEQLVEEAHAAAGHP 602

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNLSSPKQL  ILF +   P   KT +G   T  + L ++   + P+ K ILE R+L+K+
Sbjct: 603 FNLSSPKQLAQILFAEQGLPVVKKTASGTPSTDEEVLSELAL-NYPLPKIILEHRRLTKL 661

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           KSTY D LP  I+ R  R+HT +  A  +TGRL+S++PNLQNIP +T  G++IR AF + 
Sbjct: 662 KSTYLDKLPTLID-RDGRIHTTFGQAVAVTGRLSSMDPNLQNIPTRTPEGRRIRTAFTAR 720

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
               +I ADYSQ+ELRI+AH+++   L   F    DIHR  AAE+F   +++V+P  RR 
Sbjct: 721 RGWSVIDADYSQVELRIMAHLSQDAGLLSAFSRGEDIHRSTAAEVFHTPLDQVTPDQRRM 780

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK INF +IYG+S F LA Q+ + R  AA Y+  YFH+FPG+  Y+EKT+    ++GYVE
Sbjct: 781 AKVINFGLIYGMSAFGLAQQMGLDRQVAAAYVDEYFHKFPGVKRYMEKTRAQAAEDGYVE 840

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T FGRR+   +I +P+  +R   ERAAINAP+QG+AADI +RAMI+V   L   KL  K+
Sbjct: 841 TAFGRRLWVPDITAPRPMVRAAAERAAINAPMQGTAADIIKRAMIAVDAWLRTEKLQAKL 900

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           LLQ+HDEL+ E P EE+    Q +   M  A      L VPL  ++ V  +W + +
Sbjct: 901 LLQVHDELIVEAPAEEVELVKQKLPELMAGAA----KLSVPLIADVGVGASWNDAH 952



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 132/223 (59%), Gaps = 5/223 (2%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DGS++++RA++A P L+    G P  AI GF  ML     N  + S A   AVI
Sbjct: 2   SKLLLIDGSNYLFRAYHALPPLTTSR-GEPSGAIKGFLGML----ANVARLSKADRAAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+E+YP YKANRP +PE L  Q+  ++   +A G P + + G EADD+I + 
Sbjct: 57  FDAPGKTFRHEMYPAYKANRPPMPEELRTQIEPLQGIVRALGWPLLIVPGIEADDVIGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           + +A + G    + + DKD+ QLV     L +T+  +  D E VI+K+G+PPE M+   A
Sbjct: 117 SAMAARAGVDTVVATGDKDMAQLVDDHVVLLNTMNSKFYDREGVIEKYGVPPESMIAYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           L GD +DN+PGI   G KTAA  + E G ++ I   A  +K K
Sbjct: 177 LMGDKVDNVPGIKSCGPKTAAKWINEIGGIDAIRAAAPTMKGK 219


>gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 908

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/508 (39%), Positives = 313/508 (61%), Gaps = 16/508 (3%)

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
           +L L   GI +RG   D++L SY+LD   S+  ++ +A K+    L    +   K  K  
Sbjct: 409 QLALSWKGIKLRGVSFDVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQVFGKGAKFK 468

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P + +    + E+    +  + +L  +L+ KL    +  +Y  L+ P+  V+++ME+ G
Sbjct: 469 LPEEHL----LGENLSLKAERVSRLVPVLKAKLEESGMQELYYELEHPLAGVLAEMELAG 524

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D++ LKQ+  EIS  L ++ + IY+ +G  FN++SPKQLG++LF KL+ P   KTKT
Sbjct: 525 IKVDKESLKQLGTEISDQLKTIMDRIYEQAGMTFNINSPKQLGEVLFEKLQLPVQKKTKT 584

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T A+ LE++    + I+ +IL +R L+K++STY + L   +   T +VHT+Y    
Sbjct: 585 G-YSTDAEVLEKL-APYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTI 642

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITP 766
             TGRL+S  PNLQNIPI+ + G+KIR+ F+ S P   +++ADYSQIELR+LAHI+    
Sbjct: 643 AATGRLSSQYPNLQNIPIRLEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 702

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F   +DIH   A ++FGV+  +V   MRR AK +NF I+YGIS + L+  L I R 
Sbjct: 703 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 762

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA+ +I++YF  F G+  Y++      +  GYV T+  RR +  EIN+   ++R+  ER 
Sbjct: 763 EASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQRRRYLPEINASNYNLRSFAERT 822

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQG+AADI + AM+ + + L+  KL + MLLQ+HDEL+FEVPE+E+ T  +++  
Sbjct: 823 AMNTPIQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPE 882

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME+A    + L VPLKV +    NW E
Sbjct: 883 VMEQA----LALDVPLKVEVDEGENWYE 906



 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/287 (40%), Positives = 176/287 (61%), Gaps = 12/287 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S   RAFYA PLLS    GL  NA+ GF  ML +L++  +     +HF V FD
Sbjct: 28  LIIIDGNSIANRAFYALPLLSNS-SGLHTNAVYGFTTMLLRLIEEEK----PTHFLVAFD 82

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              VTFR++ Y +YK  R K P  L  Q PL++    AFGI   E++G+EADDII T T 
Sbjct: 83  AGKVTFRHKEYKEYKGGRAKTPSELSEQFPLIKELLNAFGIRQFELEGYEADDIIGTLTR 142

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181
            A+++   V ++S DKD++QL S    +  T K    ++EH     + +K+G+ PE+++ 
Sbjct: 143 AADEKKKHVMLVSGDKDMLQLASDYVTVAITRKGIS-EVEHYGPKEIEEKYGLKPEQIID 201

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GDS DNIPGIPG+G KTA  LL EYG++E++L +A  +K  K +E + E A+ AR
Sbjct: 202 MKGLMGDSSDNIPGIPGVGEKTALKLLHEYGSVESVLEHADELK-GKMKEKVKENADLAR 260

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +S++L  +  +VP++   + L+ E   GP+L    + LEF  L+ ++
Sbjct: 261 MSKELATIFREVPMSTEWDELVYEGYEGPKLQEMFRKLEFKSLLEKL 307


>gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4]
 gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4]
          Length = 884

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 321/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511
            KK+  ++   K   + K   + L   GI ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 365 FKKWLADDEMRKYTFDAKRAIVALKWKGIEIQGIYFDLLIAAYLLDPADTDKDFRAVAKM 424

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P   I    V EH     +V+  +      +L   +   
Sbjct: 425 KETHAVKSDEEVYGKGAKRAVPAQDI----VAEHVARKVHVLYDVQKTFVEELQKNEQYE 480

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V+++ME+ G+ +D + L+ +  E++  L  +E+ IY+L+G +FN++SPK
Sbjct: 481 LFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGTEFNINSPK 540

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II  IL +RQL K+ STY + 
Sbjct: 541 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MEHHEIIPKILHYRQLGKLNSTYIEG 598

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AFI  P+K+   
Sbjct: 599 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFI--PSKEGWV 656

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIAK   L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 657 MYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 716

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  A ++I++YF  FPG+ EY+++     +Q GYV T+  
Sbjct: 717 NFGIVYGISDYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLN 776

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 777 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 836

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FEVP+EE+    +++   ME A    I L VPLKV+      W
Sbjct: 837 HDELIFEVPKEEVEKLEKLVPEVMEHA----IELAVPLKVDYSSGPTW 880



 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 176/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 9   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 64  AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 123

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS TT  C+      + ++   E + +K+ + P+++
Sbjct: 124 LAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 183

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +EN+    E 
Sbjct: 184 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDKVSGKKLKENLEMNKEQ 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S++L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 244 AFMSKELATIITDAPITVHVDDIEYKGYEASDVIPMFENLGFTSLLNKLGATPEETAPAE 303

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 304 LDDISFDI 311


>gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17]
 gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17]
          Length = 877

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 321/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511
            KK+  ++   K   + K   + L   GI ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 358 FKKWLADDEMRKYTFDAKRAIVALKWKGIEIQGIYFDLLIAAYLLDPADTDKDFRAVAKM 417

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P   I    V EH     +V+  +      +L   +   
Sbjct: 418 KETHAVKSDEEVYGKGAKRAVPAQDI----VAEHVARKVHVLYDVQKTFVEELQKNEQYE 473

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V+++ME+ G+ +D + L+ +  E++  L  +E+ IY+L+G +FN++SPK
Sbjct: 474 LFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGTEFNINSPK 533

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II  IL +RQL K+ STY + 
Sbjct: 534 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MEHHEIIPKILHYRQLGKLNSTYIEG 591

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AFI  P+K+   
Sbjct: 592 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFI--PSKEGWV 649

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIAK   L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 650 MYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 709

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  A ++I++YF  FPG+ EY+++     +Q GYV T+  
Sbjct: 710 NFGIVYGISDYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLN 769

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 770 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 829

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FEVP+EE+    +++   ME A    I L VPLKV+      W
Sbjct: 830 HDELIFEVPKEEVEKLEKLVPEVMEHA----IELAVPLKVDYSSGPTW 873



 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 176/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS TT  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +EN+    E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDKVSGKKLKENLEMNKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S++L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 237 AFMSKELATIITDAPITVHVDDIEYKGYEASDVIPMFENLGFTSLLNKLGATPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDISFDI 304


>gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
 gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
          Length = 889

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/513 (38%), Positives = 300/513 (58%), Gaps = 15/513 (2%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H++K     L   G+   GF  D  + +Y+L     S+++  +    ++Y  +E  K++ 
Sbjct: 384 HDVKTLLSRLLEEGVEGDGFVFDTAIAAYLLAPTDGSYELEKLG---ITYFNQEFAKAKD 440

Query: 526 SSIPIDKIS----DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           + +  D  S     + V    + +  +I  L  +L P+L    +  +Y  ++ P+  V+S
Sbjct: 441 TYLAPDAFSPLADQTAVLGGMLSHCALIGALKKVLAPRLEELGMHQLYYDIELPLCQVLS 500

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  G+ +D+  L +    + + + + +  IY+L+GE FN++S +QLG ILF KL  P 
Sbjct: 501 AMEHAGMLVDRKALSEFGDMLDERIAADQAEIYELAGETFNINSTQQLGKILFDKLGLPP 560

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T A+ LE++  G +PII  ILE+RQ +K+KSTY D L   I     R+HT
Sbjct: 561 VKKTKTG-YSTNAEVLEKLR-GQHPIIDKILEYRQYTKLKSTYVDGLGKVIAP-DGRIHT 617

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +    T TGRL+S EPNLQNIP++T+LG ++R+ F++P  K L+ ADYSQIELR+LAHI
Sbjct: 618 SFQNTVTATGRLSSTEPNLQNIPVRTELGAELRKMFVAPAGKVLVDADYSQIELRLLAHI 677

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A    + + F    DIH + AA++FGV +++V+  MR  AK +NF I+YGIS F L+  +
Sbjct: 678 AGDEHMIEAFRTGEDIHTVTAAQVFGVPVDQVTKHMRSSAKAVNFGIVYGISAFSLSQDI 737

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            +P  EA +YI++YF RF G+H Y+    N  + +GYV T+FGRR    E+ S   + R+
Sbjct: 738 GVPTYEAKEYIEKYFARFSGVHAYMTDVVNRAKTDGYVSTLFGRRRWLPELKSSNFNTRS 797

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+N PIQG+AADI + AM+ VH  L +  L  +++LQ+HDEL+ E PEEE  T  
Sbjct: 798 FGERVALNMPIQGTAADIMKLAMLHVHSRLREEGLQARLILQVHDELIVECPEEEAETVK 857

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++   ME        L VPL  +     +W E
Sbjct: 858 ALLSREMESVA----QLAVPLIADAAAGRSWAE 886



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 156/292 (53%), Gaps = 16/292 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S + RAFY   +L+ + DG P NA+ GF  +L KL+   + +++       FD
Sbjct: 3   LMVIDGNSIVNRAFYGVHMLTTR-DGQPTNAVYGFLTILQKLVDEEKPDALC----CTFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+  Y  YKA R  +P+ L  Q+P+++    A  IP  E+ G+EADD+I T + 
Sbjct: 58  RKAPTFRHLAYEGYKAQRKGMPDELASQMPILKEVLDAMNIPRYEMDGWEADDLIGTISV 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIPPEK 178
                G+   +++ DKD +QLV+  T +          T KE   D     + +G  P  
Sbjct: 118 KDAAAGWDTVVVTGDKDSLQLVTDRTRVKLVSTRMGQTTTKEMTPDT--FRETYGFDPIH 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-RENILEYA 237
           ++ L+AL GD+ DNIPG+ G+G KTA  L+Q Y ++E I  +  +++ K    + + E  
Sbjct: 176 IIDLKALMGDASDNIPGVKGVGEKTAMDLIQRYQSVEAIYADLDKVEAKPAVLKKLTEGR 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           E A +S  L  +RTD P+    E    ++ N   L      LEF+KLI+++ 
Sbjct: 236 EQAMMSYDLATIRTDAPLDFKPEDAARKEVNQAELYQLFLKLEFSKLIDKMG 287


>gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
 gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
          Length = 579

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 196/463 (42%), Positives = 296/463 (63%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 134 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 179

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 180 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 238

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 239 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 296

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 297 VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 356

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I 
Sbjct: 357 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIP 416

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 417 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 476

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 477 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 536

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 537 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 575


>gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 321/526 (61%), Gaps = 15/526 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+   EN   +K   N+K   ++  R G++++G + D +L +Y+LD+  + ++++++AQ+
Sbjct: 373 LRAVIENPAIIKNVFNVKAQLVMFKRLGLALQGVDFDFLLAAYLLDTTANDNELSTLAQR 432

Query: 512 WLSYTR--KEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           +  Y +  +EI  K  K ++P D     +V  H  + ++ ++QL       L   + +H+
Sbjct: 433 FDVYVQPDEEIYGKGAKFAVPEDV---DRVLMHLGQKADALMQLETPTLAALTDHEQMHL 489

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y  ++ P+  V++ ME  GI I+Q  L ++  +++  + ++E+ IY  +GEKFN++SPKQ
Sbjct: 490 YTDIELPLAHVLADMEYRGIAINQARLAEIGTDLTGRIQAIEDAIYLEAGEKFNINSPKQ 549

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG +LF K+  P   KTKTG   +TA D+ +      PI+  +L++RQL+K+KSTY D L
Sbjct: 550 LGVLLFEKMGLPVIKKTKTGY--STAVDVLEKLAHQAPIVDYVLQYRQLAKLKSTYVDGL 607

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
              +N++  ++HT +    T TGRL+S++PNLQNIP+++D G++IR AF+ S P  ++  
Sbjct: 608 LAVVNQKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSDEGRQIRTAFVPSQPDWQIFG 667

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINF 806
           ADYSQIELR+LAH+     + Q F N  DIH   A  +FG++ +  V+   RR AK +NF
Sbjct: 668 ADYSQIELRVLAHMTGDKNMQQAFLNGEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNF 727

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS F LA  L I R++A  +I  YF  FP +HE++E  K      GYVETI  RR
Sbjct: 728 GIVYGISDFGLANNLGISRAQAKQFIDTYFKEFPKVHEWMENIKAVAHAQGYVETIAKRR 787

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  +I++   ++R+  ER A+N+PIQGSAADI + AMI V  +L ++ +  +MLLQ+HD
Sbjct: 788 RYLPDIHAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVADALAENNMQARMLLQVHD 847

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FE P  EI   + ++   M+ A    + L VP++V       W
Sbjct: 848 ELIFEAPTSEIPALTALVTKVMDSA----VTLDVPMQVESHYGKTW 889



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 158/292 (54%), Gaps = 15/292 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R   H+GL  NA+  F N L +++     + +    AV
Sbjct: 5   LLLIDGNSLAFRAFYAMYNQLDRMIAHNGLHTNALVAFNNFLDQIV-----DPMQPDLAV 59

Query: 64  I-FDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           + +D  +   TFR +++  YK  R K PE    Q P +R      G+   E  G EADDI
Sbjct: 60  VAWDAASGKETFRGDLFAGYKDGRSKAPEEFKEQFPYLREMVALHGLRNYEHPGLEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T++ + E  G+ VTI++ D+DL+QL +    +  T K     E+    ++ +K+G+ P
Sbjct: 120 IGTFSRLGEAAGYQVTIVTGDQDLIQLATDNITVNVTKKGVTGIERFTPAYIQEKYGLTP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++  +ALTGD+ D  PG+  IG KTA  LL +Y +L+N+      +K  K +EN++  
Sbjct: 180 LQIIEKKALTGDTSDTYPGVTKIGEKTALKLLAQYHDLDNLYAQIDEMKPSKMKENLIND 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            E A  +R+L  +RTD  + +PL  +     +   L+ F + ++F + + ++
Sbjct: 240 REAAYTARQLATIRTDADLELPLTEIEYRGIDYDGLVPFYEDIDFKQQLAKI 291


>gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
 gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
          Length = 877

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/464 (42%), Positives = 299/464 (64%), Gaps = 34/464 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 431 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 476

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 477 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 535

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE-WRQLSKIKSTYADSLP 689
            ILF KL+ P   K+KTG + T+A  LE++    + I++NIL+ +RQL K++STY + L 
Sbjct: 536 VILFEKLQLPVLKKSKTG-YSTSADVLEKL-APYHEIVENILQHYRQLGKLQSTYIEGLL 593

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SA 748
             +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +A
Sbjct: 594 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAA 653

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I
Sbjct: 654 DYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGI 713

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR +
Sbjct: 714 VYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRY 773

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL
Sbjct: 774 LPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDEL 833

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 834 ILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 873



 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 118/289 (40%), Positives = 173/289 (59%), Gaps = 11/289 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H  V FD
Sbjct: 5   LVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTHMLVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDII T   
Sbjct: 60  AGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTLAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181
            AE+EGF V +IS D+DL QL SP   + D  K+   DIE      V +K+G+ PE++V 
Sbjct: 120 RAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPEAVREKYGLTPEQIVD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +E + ++ E A 
Sbjct: 179 LKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMAL 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           LS+KL  +R D P+ + L+ +  +  +  ++++  K L F   + ++ +
Sbjct: 239 LSKKLAAIRRDAPVELSLDDIAYQGEDREKVVALFKELGFQSFLEKMES 287


>gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87]
          Length = 687

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/532 (38%), Positives = 335/532 (62%), Gaps = 28/532 (5%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHD--IAS 507
           SY K   ++E  L+   + K    +L RYG  +  F ED+ L +++L S  +  D  I+S
Sbjct: 174 SYFKNMLKHETSLRTW-DAKEMMHLLQRYGFYVPSFKEDLHLAAFLLHSQATDTDSLISS 232

Query: 508 IAQKWLSYTRKEILKSRKS--SIPIDK---ISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +  + L  T  ++LK  K+  +  ID+   ++ +   + +I   N+          +L  
Sbjct: 233 LGIE-LPETIHDLLKKAKTVEACHIDRLLPVTCAWTWQLSIRQDNIF--------DELKK 283

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           + LL +YE ++KP++ ++ +ME  GI ID+++L ++ A+    L SL + I++++   FN
Sbjct: 284 DNLLDLYENIEKPLVRILFEMENQGIHIDENVLDEIGAKTDTILESLTQQIHEMAHMVFN 343

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQL  +L+ +L    G K ++    T+A+ LE++  G +PII  +L++R+ SKIKS
Sbjct: 344 INSPKQLAGVLYDELNLKGGGKKRS----TSAEVLEKLK-GSHPIIDVLLDYRKYSKIKS 398

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY + L  HI + + ++HT ++ A T TGRL+S +PNLQNI ++ + G++IR+AF++   
Sbjct: 399 TYIEGLKKHIQQDS-KIHTCFNQAMTQTGRLSSSDPNLQNISVRDEQGREIRKAFVAQKG 457

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            KL+SADYSQIELR+LAH+A  T + + F+   DIH   A+ IF V+ E V+P MRR AK
Sbjct: 458 YKLLSADYSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRVAK 517

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           T+NF I+YG + F L+ QL+I R EA ++++ YF  +P IH+++ +  +F ++NGYVET+
Sbjct: 518 TVNFGIVYGQTEFGLSQQLKISRKEAGEFMETYFASYPNIHQFMNQLIDFCKENGYVETM 577

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           F RR    EIN      R   +RAA+NAPIQGSAAD+ + AMI V +++++  + +KMLL
Sbjct: 578 FHRRRMIPEINDKNFMTREFGKRAAMNAPIQGSAADLIKIAMIRVDQAMKEKNVKSKMLL 637

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+F VP++E+     ++  +ME+A    + L+VPLK +I    +W E
Sbjct: 638 QIHDELIFLVPDDELEVMQALVKEAMEQA----MELKVPLKASINFGQSWYE 685



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 14/122 (11%)

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ L+ + GDS DNIPG+ GIG K A  LL +YG+LEN+  N  +IK  K++E +L 
Sbjct: 2   PKQIIDLKGIMGDSSDNIPGVAGIGEKGATKLLVQYGSLENVYENIDQIK-GKQKEKLLN 60

Query: 236 YAETARLSRKLVMLRT--DVPITIPLEHLILEDCN----GPRLISFLKALEFTKLINRVA 289
             E A +S++L  + T  D P TI       +DC       ++  F +  E   LI++  
Sbjct: 61  DKENAFMSKELATIYTSMDFPFTI-------QDCKFDGYDEKVNDFYQKYEMRSLISKTT 113

Query: 290 TT 291
            T
Sbjct: 114 MT 115


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 322/523 (61%), Gaps = 36/523 (6%)

Query: 467 HNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521
           H IK D LV   Y GI  +  + D  +M+Y+L+   S++D+  + +K+L     + +E+ 
Sbjct: 326 HEIK-DFLVKLSYKGIECKSKYIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVF 384

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK------- 574
              +    +++I +  + ++       +  L          EKL++  E +D        
Sbjct: 385 GKGRDKKKLEEIREDVLADYICSRCVHLFDLR---------EKLMNFIEEMDMKKLLLEI 435

Query: 575 --PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
             P+++V+  ME++G  +D+++LK++S +I   +  + + IY  +G +FN++SPKQL + 
Sbjct: 436 EMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQFNVNSPKQLSEF 495

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNH 691
           LF KL  P   KTKTG + T ++ LEQ+    N ++ +I+E+RQL+K+KSTY D  LP  
Sbjct: 496 LFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNDVVSDIIEYRQLTKLKSTYIDGFLP-- 551

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           +     RVH+ +    T TGR++S EPNLQNIPI+ + G++IRRAFI P TK   ++SAD
Sbjct: 552 LMDENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRRAFI-PRTKDGYIVSAD 610

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH++    L + F N+ DIH   AAE+F V +EKV+P+MRR AK +NF II
Sbjct: 611 YSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGII 670

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + L+  L+I R EA +YI  YF R+ G+ EYIEK   F ++NGYV TI  RR + 
Sbjct: 671 YGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYI 730

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            EINS   + R+  ER A+NAPIQGSAADI + AM+ V++  +  +L ++++LQ+HDELV
Sbjct: 731 PEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELV 790

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +  ++E+    +I+  +ME      I L+VPL V I +  NW
Sbjct: 791 VDTYKDEVDIVKKILKENMENV----IKLKVPLVVEIGIGPNW 829



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 155/259 (59%), Gaps = 9/259 (3%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML KL++  + + IA    + FD  A TFR++ Y DYKA R  +PE L  Q+ L++    
Sbjct: 1   MLIKLIEEEKPDYIA----IAFDKKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIID 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--- 160
            F I  +E++G+EADD+I T + +AE++G  V +++ D+D +QLVS    +  + K    
Sbjct: 57  GFNIKTLELEGYEADDLIGTISKLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQ 116

Query: 161 -EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            E+ D + V++++ I P + + L+ L GD  DNIPGIP IG KTA  LL+E+G++EN+L 
Sbjct: 117 MEEFDEKAVLERYEITPYQFIDLKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLQ 176

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
           N S++K  K +ENI    E A +S++L  ++ D+PI I  E   ++D N  +L+     L
Sbjct: 177 NLSQLKG-KIKENIENNKELAVMSKRLATIKRDIPIEIDFEEYRVKDFNEEKLLEIFNKL 235

Query: 280 EFTKLINRVATTYDCDAAN 298
           EF  LI+ +    + +  N
Sbjct: 236 EFFSLIDSIKKKDNVEIVN 254


>gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 886

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/540 (37%), Positives = 329/540 (60%), Gaps = 20/540 (3%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501
           + L  E  + ++ +  +E   K G+++    LVL  +G++  G E D+ L +Y+LD   S
Sbjct: 357 DVLQSEAAAEVRAWLADEQVPKRGYDLHRADLVLFWHGVAFAGAEHDVQLAAYLLDPTES 416

Query: 502 SHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
              I+ +A K+    +    +   K  K  +P   +    +  H    ++ +L++  L R
Sbjct: 417 DQTISGLAAKYQLPQVPGDDEVYGKGAKFKVPEPDV----LSRHLARKADALLRILPLQR 472

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
             L   ++  ++  L+ P+  +++ ME  G+ ++++ LK++  E    +  L   IY+++
Sbjct: 473 EDLAKYEMEKLFYELEMPLSRILADMEKQGVAVNKEALKELGVEFEAQINKLVARIYEIA 532

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           G++FN++S KQLG+ILF KL  P   KTKTG + T A+ LE++    + I++ ILE+RQL
Sbjct: 533 GQEFNINSTKQLGEILFDKLGLPVIKKTKTG-YSTDAEVLEKL-APYHEIVQFILEYRQL 590

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           +K++STY + L   I+ +T +VHT++      TGRL+S  PNLQNIPI+ + G+KIR+ F
Sbjct: 591 AKLQSTYVEGLLKEISPKTGKVHTYFRQTIAATGRLSSQYPNLQNIPIRLEEGRKIRKVF 650

Query: 738 ISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           +  P+++   ++SADYSQIELR+LAHI+    L + F + +DIH   A ++FGV  ++V 
Sbjct: 651 V--PSEEGWFILSADYSQIELRVLAHISGDPGLQEAFLHDMDIHTKTAMDVFGVGPDQVD 708

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
             MRR AK +NF I+YGIS + L+  L I R EAA +I++YF+ F G+  Y+++     +
Sbjct: 709 ANMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAARFIEQYFNAFQGVRRYMDEIVKAAK 768

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           ++GYV+T+  RR +  EIN+   ++R+  ER A+N PIQG+AADI + AM+ + + L  H
Sbjct: 769 RDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGTAADIIKLAMVRMDEELHKH 828

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            L ++MLLQ+HDELVFEVP EE+   S+++  +M KA    + L VPLK  +    NW E
Sbjct: 829 GLKSRMLLQVHDELVFEVPPEELEFMSKLVPETMGKA----LELSVPLKAEVSSGLNWYE 884



 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/312 (38%), Positives = 180/312 (57%), Gaps = 14/312 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S IYRAF+A P L+    GL  NA+ GF NML +L+Q  R     +H  V FD
Sbjct: 4   LILIDGNSIIYRAFFAMPPLTNS-SGLHTNAVYGFTNMLLRLIQEER----PTHMLVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              VTFR+E Y +YK  R K P  L  Q PL+R   ++FGI   E+ G+EADDII T + 
Sbjct: 59  AGKVTFRHEGYQEYKGGRDKTPPELSEQFPLMRELLESFGIAWFELSGYEADDIIGTLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE+ G  V +++ DKD++Q+VS    +  T K     E    + + +K+G+ P +++ L
Sbjct: 119 RAEEAGHEVLVVTGDKDMLQVVSDRVKVALTRKGVSEVEPYGPQQIEEKYGLKPLQIIDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DNIPG+PGIG KTA  LL +YG++E +L +   +K  K +EN++ +AE AR+
Sbjct: 179 KGLMGDTSDNIPGVPGIGEKTALKLLHQYGSVEEVLAHTDELK-GKMKENLVNHAEDARM 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----ATTYDCDAAN 298
           S++L  +  +VPI    E +  +       +  L+ LEF  L+ R+          +AA 
Sbjct: 238 SKQLATIFREVPIERSWEEMKFDGIPEETAVPMLRKLEFKSLLERMSFAGGENATGEAAR 297

Query: 299 IEPVVLDINTTE 310
            E V + + T +
Sbjct: 298 AEQVDIQVTTVD 309


>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
 gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
          Length = 920

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 209/558 (37%), Positives = 329/558 (58%), Gaps = 31/558 (5%)

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLD 497
           + G+    + +LS LK   E++ + K+  N KYD+LVL R G+S+ G   D ML SYVL+
Sbjct: 370 TAGEQLSMETVLSALKPILEDQQYPKVFQNAKYDRLVLRRAGVSLTGVVFDPMLASYVLN 429

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
              +SH+++ +A ++L  T             I +++ ++V ++   + +   +L  LL+
Sbjct: 430 P-ENSHNLSDLALRYLELTTVSYTDLVPKGKTIGEVAIAEVAQYCGSDVHTTYRLVPLLK 488

Query: 558 PKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
             L  V  L  +Y  ++ P+  V+++ME TGI+ID+  L Q S ++  +L  +E+  YD 
Sbjct: 489 ADLQEVPDLATLYTEVELPVEPVLAKMEATGIRIDKAYLNQFSKQLESDLAGIEKAAYDA 548

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPS--GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           +GE+FNL SPKQL ++ F KL        K KTG + T A  LE++  GD+P++ +++E+
Sbjct: 549 AGEEFNLGSPKQLSELFFEKLGLDKRKSRKNKTG-YSTDAATLEKLQ-GDHPVVDSVVEY 606

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           R LSK+KSTY D+LP  I   T RVHT ++ A T TGRL+S  PNLQNIP +T   ++IR
Sbjct: 607 RTLSKLKSTYVDALPALIRPNTGRVHTDFNQAITTTGRLSSSNPNLQNIPTRTAFSRQIR 666

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           +AF+     +L++ADYSQIELRILAH+++   L + +    D+HR+ A  +F  + ++++
Sbjct: 667 QAFLPKEGWQLVAADYSQIELRILAHLSEEPILIKTYREDEDVHRLTATLLFDKDKDEIT 726

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            + RR AK INF +IYG+   R A ++ I R +A  +I R+  R+P + EY+++ +    
Sbjct: 727 VEERRMAKVINFGVIYGMGAARFAREMDIHRLDAKTFIDRFNQRYPNVFEYLQQMQREAI 786

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINE------------------RAAINAPIQGSA 896
             GYV+TI GRR +++       +++  +                   RAA NAPIQGS+
Sbjct: 787 AYGYVKTIAGRRRYFNFTTRSLQALKGTDPTKIDLSSLRTNGYDAGLLRAAANAPIQGSS 846

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI +H+ L+ ++    MLLQ+HDEL+FEVP +E       I  +ME A    +
Sbjct: 847 ADIIKVAMIRLHELLKGYQ--ANMLLQVHDELIFEVPPDEWEELQPKIEQTMEDA----V 900

Query: 957 NLRVPLKVNIKVSNNWQE 974
           +L VPLKV  +   NW E
Sbjct: 901 SLAVPLKVEAQAGKNWME 918



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/242 (37%), Positives = 128/242 (52%), Gaps = 15/242 (6%)

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + A+ FD    TFR+EI   YKA R + PE     +  ++    AF +P   + G+EADD
Sbjct: 11  YAAITFDLSEPTFRHEITDTYKAGRAETPEEFTEDVENLKALLSAFQLPIFSLPGYEADD 70

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP----------TTCLYDTVKEEKIDIEHVI 169
           +I T    A+ +G+ V I+S D+DL QL+ P          TT    T   ++     V+
Sbjct: 71  MIGTLAVRAKGKGYRVKILSGDQDLFQLIDPEEAIKVMYLSTTFGSKTSTTKEYGNAEVL 130

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--K 227
           +K  I P ++V  +AL GD+ DNIPG+ GIG KTA  LL  YG+LE I  +   +K   K
Sbjct: 131 EKLSILPSQVVDYKALCGDTSDNIPGVKGIGKKTAVKLLDTYGDLETIYASIDELKGAVK 190

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           KR E      E A  S++L  ++TDVP+   LE   LE  N   +I  LK LE    +NR
Sbjct: 191 KRLET---GKEDAAQSKQLAKIKTDVPLETDLETCKLEGFNPEDVIPALKQLELQHFVNR 247

Query: 288 VA 289
           ++
Sbjct: 248 LS 249


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/479 (40%), Positives = 305/479 (63%), Gaps = 15/479 (3%)

Query: 499 GRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
            +++ D+A++A+  ++ +    E +  K  K ++P     +  + EH    +  I  L  
Sbjct: 404 AQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKRTVP----DEPTLAEHLARKAAAIWALEE 459

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            L  +L   +   +   L++P+  +++ ME TG+++D   L+Q+ AE+++ L ++E  IY
Sbjct: 460 PLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIY 519

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           +L+G++FN++SPKQLG +LF KL+ P   KTKTG + T+A  LE++    + I+++IL +
Sbjct: 520 ELAGQEFNINSPKQLGTVLFDKLQLPVLKKTKTG-YSTSADVLEKL-APHHEIVEHILHY 577

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQL K++STY + L   ++  T +VHT ++ A T TGRL+S+EPNLQNIPI+ + G+KIR
Sbjct: 578 RQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIR 637

Query: 735 RAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           +AF+ S P   + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ E V
Sbjct: 638 QAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +  MRR AK +NF I+YGIS + LA  L I R EAA++I+RYF  FPG+ +Y++      
Sbjct: 698 TANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI +   L +
Sbjct: 758 KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRLRE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +L  ++LLQ+HDEL+ E P+EEI    +++   ME+A    + LRVPLKV+      W
Sbjct: 818 ERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQA----VALRVPLKVDYHYGPTW 872



 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/294 (40%), Positives = 177/294 (60%), Gaps = 9/294 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H  V
Sbjct: 2   KNKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTHILV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + DYK  R + P  L  Q PL+R   +A+ IPA E+  +EADDII T
Sbjct: 57  AFDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGFAV +IS D+DL QL SP   +  T K     E    E V++K+G+ PE++
Sbjct: 117 MAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +Y + 
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A LS++L  +  D P+ + L+ ++ +  +  ++++  + L F   ++++A   D
Sbjct: 237 ALLSKQLAAICRDAPVELTLDDIVYKGEDREKVVALFQELGFQSFLDKMAVQTD 290


>gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
 gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
          Length = 881

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 211/509 (41%), Positives = 309/509 (60%), Gaps = 23/509 (4%)

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + LHRY  S  G + D +L  Y+LD+  SS+D+A +A ++    +        K  K  +
Sbjct: 382 VALHRYVGSPNGIQFDSLLACYLLDTNDSSNDLALVAHRYGLTEIETDEAVYGKGAKKGL 441

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   + +   H       + +L   L  +L+ +    +Y+ ++ P+  ++++MEITGI
Sbjct: 442 PED---NERFYSHLARKVATMQKLDTKLSDELVEKGQWTLYKEMELPLSFILAEMEITGI 498

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D   L  + +E +  L  +EE IY  + E+FNL+SPKQLG ILF K+  P   KTKTG
Sbjct: 499 HVDAQRLIAMKSEFATKLHDIEEKIYAQANERFNLNSPKQLGVILFEKMGLPVIKKTKTG 558

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T    LEQ+     PI+++IL +RQ++KI+STY + L   I +   +VHT Y    T
Sbjct: 559 -YSTAVDVLEQLKV-QAPIVEDILTYRQIAKIQSTYVEGLLRMI-QSDGKVHTRYVQTLT 615

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI--SADYSQIELRILAHIAKITP 766
            TGRL+S++PNLQNIPI+ + G+KIR+AF+ P  K  +  S+DYSQIELR+LAHI+K   
Sbjct: 616 QTGRLSSVDPNLQNIPIRLEEGRKIRQAFV-PRNKNWVIYSSDYSQIELRVLAHISKDEH 674

Query: 767 LYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+ + E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 675 LQAAFIEGQDIHTSTAMRVFGLESAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITR 734

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            +A  YI  YF R+PG+  Y+E      +++GYVET++ RR +  ++ +   +IR+  ER
Sbjct: 735 KQAQQYIDTYFERYPGVKAYMENVVEQAKKDGYVETLYHRRRYLPDLYAKNYNIRSFAER 794

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI ++K L++ KLA  MLLQ+HDELVFEVPEEE+    Q++ 
Sbjct: 795 TAINSPIQGSAADILKIAMIEMNKRLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVK 854

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME A    + L +PL  +    +NW E
Sbjct: 855 EVMEHA----VTLAIPLVTD----SNWGE 875



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 174/313 (55%), Gaps = 14/313 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NA+  F NM  K+++  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHQSLDRFKNANGLHTNALYAFHNMFTKVMEKEK----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR ++Y +YK  R K P     QLP +R    AFG+   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTQMYAEYKGGRAKTPTEFKEQLPYLRELLDAFGVKHYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T+   A+KE F V I++ D+DL QL      +  TVK     E    E + +K+ G+ 
Sbjct: 119 IGTFAQRADKESFDVVILTGDRDLTQLADEHIKVDITVKGVSEIEAYTPESIAEKYQGLV 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GDS DNIPG+  IG KTA  LL ++G++E I  +   +K  K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDSSDNIPGVTKIGEKTAIKLLNQFGSVEGIYEHLDELKPSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             + A LS+ L  + TD P+ + +E L+ +  +  +L++F + + F   +++++ + D D
Sbjct: 239 DKDQAFLSKTLATINTDAPVDLTIEQLVYKGQHTEKLVAFYQEMNFQSFLSKLSVS-DAD 297

Query: 296 AANIEPVVLDINT 308
             N+  +  D  T
Sbjct: 298 -KNLADISFDYVT 309


>gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44]
 gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44]
          Length = 884

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/525 (37%), Positives = 320/525 (60%), Gaps = 18/525 (3%)

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513
           K+  +E   K   + K   + L    + ++G + D+++ +Y+LD   +  D  ++A+   
Sbjct: 367 KWLADEDMRKYTFDAKRAIVALKWKDVEIKGIDFDLLIAAYLLDPADTDKDFRAVAKMKE 426

Query: 514 SYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           ++  K   E+  K  K ++P   +    V EH     +V+  +      +L   +   ++
Sbjct: 427 THAVKSDEEVYGKGAKRAVPEQGV----VAEHVARKVHVLFDVQKTFVEELEKNEQYELF 482

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             L+ P+  V+++ME+ G+++D + L+ +  E++  L  +E+ IY+L+G +FN++SPKQL
Sbjct: 483 TELEMPLARVLAEMEVKGVKVDTERLRNMGDELAGRLKEMEQKIYELAGTEFNINSPKQL 542

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           G +LF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + L 
Sbjct: 543 GVVLFENLNLPVIKKTKTG-YSTSADVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLL 600

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI--S 747
             +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AFI P T+  +  +
Sbjct: 601 KVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFI-PSTEGWVMYA 659

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAHIAK   L + F++ +DIH   A ++FGV  ++V+  MRR AK +NF 
Sbjct: 660 ADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFG 719

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I+YGIS + L+  L I R  A ++I++YF  FPG+ EY+++     +Q GYV T+  RR 
Sbjct: 720 IVYGISDYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRR 779

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+HDE
Sbjct: 780 YIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMANRLEEEGLQARLLLQVHDE 839

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L+FEVP+EE+    +++   ME A    I L VPLKV+      W
Sbjct: 840 LIFEVPKEEVEKLEKLVPEVMEHA----IELAVPLKVDYSSGPTW 880



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 9   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 64  AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 123

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 124 LAKEASEQGAYVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTTEALFEKYSLSPKQI 183

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    E 
Sbjct: 184 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A +S++L  + TD PIT+ ++ +  +      +I   + L FT L+N++ AT  +   A 
Sbjct: 244 ALMSKELATIITDAPITVHVDDIEYKGYEASDVIPMFENLGFTSLLNKLGATPEETVPAE 303

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 304 LDEISFDI 311


>gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 886

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/531 (38%), Positives = 323/531 (60%), Gaps = 16/531 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S LK+  E+    K   ++K     L+R GI   G   D++L SY++D+ ++S+D+  + 
Sbjct: 363 SPLKEMLEDSAVQKNVFDLKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNSNDLGELV 422

Query: 510 QKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           Q +  Y  K  L    K + + IP D   D+    H    +  I  L   L  +L   + 
Sbjct: 423 QGYDYYDLKTDLEVYGKGKNAKIPAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ 479

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y+ ++ P   V+++ME+ GI++    LK++  + +  L  LEE IY  +GE+FNL+S
Sbjct: 480 DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS 539

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF KL  P   KTKTG + T+ + L Q+    +P++ +ILE+RQ+SKI+STY 
Sbjct: 540 PKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLKE-QSPVVSDILEYRQISKIQSTYV 597

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
             L + I++R  R+HT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   
Sbjct: 598 KGLLDVIDERDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGY 657

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803
           + S DYSQIELR+LAH++    + + F+   DIH   A +IF ++ +++V+   RR AK 
Sbjct: 658 IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKA 717

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A ++I  YF ++PGI  Y++      R+ GY ETI 
Sbjct: 718 VNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFDQYPGIQAYMDWAVKDAREKGYAETIM 777

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I++   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q
Sbjct: 778 HRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQ 837

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDEL+F+VP +E+ T  +I+   M+ A    + L VPL  +    ++W E
Sbjct: 838 VHDELIFDVPADELETIQKIVPSVMQAA----VKLDVPLVADASWGHDWYE 884



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 155/290 (53%), Gaps = 11/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAF+A      K    +GL  NA+  F NML  +L    K+   SH  V
Sbjct: 5   LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQEDPSHILV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR  +Y DYK  R K P  L  Q P +R   +  GI + E+  +EADDII T
Sbjct: 61  AFDAGKTTFRTAMYKDYKGGRDKAPAELSEQFPYLREMLKDMGIKSYELANYEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
                 + G+ V ++S DKDL QL S    +Y T     K E    +H+ +  G+ P + 
Sbjct: 121 MAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTEF 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD  DN PG+  +G KTA+ L+QEYG++EN+  +   +K+ K +EN++   + 
Sbjct: 181 IDMKALMGDPSDNYPGVAKVGPKTASKLIQEYGSVENLYDHVDEMKKSKLKENLIAGKDN 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           A L +KL  ++ D P+ + L+ L  E  N   L  F + + F + +  +A
Sbjct: 241 ALLGKKLATIKCDSPVEVTLDDLSYEGSNVDDLRRFYEKMNFRRFLADLA 290


>gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 561

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 322/523 (61%), Gaps = 36/523 (6%)

Query: 467 HNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521
           H IK D LV   Y GI  +  + D  +M+Y+L+   S++D+  + +K+L     + +E+ 
Sbjct: 54  HEIK-DFLVKLSYKGIECKSKYIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVF 112

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK------- 574
              +    +++I +  + ++       +  L          EKL++  E +D        
Sbjct: 113 GKGRDKKKLEEIGEDILADYICSRCVHLFDLR---------EKLMNFIEEMDMKKLLLEI 163

Query: 575 --PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
             P+++V+  ME++G  +D+++LK++S +I   +  + + IY  +G +FN++SPKQL + 
Sbjct: 164 EMPLVEVLKLMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQFNVNSPKQLSEF 223

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNH 691
           LF KL  P   KTKTG + T ++ LEQ+    N ++ +I+E+RQL+K+KSTY D  LP  
Sbjct: 224 LFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNDVVSDIIEYRQLTKLKSTYIDGFLP-- 279

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           +     RVH+ +    T TGR++S EPNLQNIPI+ + G++IRRAFI P TK   ++SAD
Sbjct: 280 LMDENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRRAFI-PRTKDGYIVSAD 338

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH++    L + F N+ DIH   AAE+F V +EKV+P+MRR AK +NF II
Sbjct: 339 YSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGII 398

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + L+  L+I R EA +YI  YF R+ G+ EYIEK   F ++NGYV TI  RR + 
Sbjct: 399 YGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYI 458

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            EINS   + R+  ER A+NAPIQGSAADI + AM+ V++  +  +L ++++LQ+HDELV
Sbjct: 459 PEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELV 518

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +  ++E+    +I+  +ME      I L+VPL V I +  NW
Sbjct: 519 VDTYKDEVEIVKKILKENMENV----IKLKVPLVVEIGIGPNW 557


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 322/523 (61%), Gaps = 36/523 (6%)

Query: 467 HNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521
           H IK D LV   Y GI  +  + D  +M+Y+L+   S++D+  + +K+L     + +E+ 
Sbjct: 365 HEIK-DFLVKLSYKGIECKSKYIDTAVMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVF 423

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK------- 574
              +    +++I +  + ++       +  L          EKL++  E +D        
Sbjct: 424 GKGRDKKKLEEIGEDILADYICSRCVHLFDLR---------EKLMNFIEEMDMKKLLLEI 474

Query: 575 --PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
             P+++V+  ME++G  +D+++LK++S +I   +  + + IY  +G +FN++SPKQL + 
Sbjct: 475 EMPLVEVLKLMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQFNVNSPKQLSEF 534

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNH 691
           LF KL  P   KTKTG + T ++ LEQ+    N ++ +I+E+RQL+K+KSTY D  LP  
Sbjct: 535 LFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNDVVSDIIEYRQLTKLKSTYIDGFLP-- 590

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           +     RVH+ +    T TGR++S EPNLQNIPI+ + G++IRRAFI P TK   ++SAD
Sbjct: 591 LMDENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRRAFI-PRTKDGYIVSAD 649

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH++    L + F N+ DIH   AAE+F V +EKV+P+MRR AK +NF II
Sbjct: 650 YSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGII 709

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + L+  L+I R EA +YI  YF R+ G+ EYIEK   F ++NGYV TI  RR + 
Sbjct: 710 YGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYI 769

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            EINS   + R+  ER A+NAPIQGSAADI + AM+ V++  +  +L ++++LQ+HDELV
Sbjct: 770 PEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELV 829

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +  ++E+    +I+  +ME      I L+VPL V I +  NW
Sbjct: 830 VDTYKDEVDIVKKILKENMENV----IKLKVPLVVEIGIGPNW 868



 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/296 (38%), Positives = 181/296 (61%), Gaps = 10/296 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KL++  + + I    A+ FD
Sbjct: 4   FLVIDGSSLMYRAYYALPMLT-TSEGLHTNALYGFTMMLIKLIEEEKPDYI----AIAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y DYKA R  +PE L  Q+ L++     F I  +E++G+EADDII T + 
Sbjct: 59  KKAPTFRHKEYQDYKATRQAMPEELTEQVDLLKEIIDGFNIKTLELEGYEADDIIGTISK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++G  V +++ D+D +QLVS    +  + K     E+ D + V++++ I P++ + L
Sbjct: 119 LAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPQQFIDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPGIP IG KTA  LL+E+G++EN+L N S++K  K +ENI    E A +
Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLQNLSQLKG-KIKENIENNKELAVM 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           S++L  ++ D+PI I  E   ++D N  +L+     LEF  LI+ +    + +  N
Sbjct: 238 SKRLATIKRDIPIEIDFEEYRVKDFNEEKLLELFNKLEFFSLIDNIKKKNNVEIVN 293


>gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 889

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/531 (38%), Positives = 322/531 (60%), Gaps = 16/531 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S LK   E+    K   ++K     L+R GI       D++L SY++D+ ++S+D+  + 
Sbjct: 366 SPLKGMLEDSAVQKNVFDLKRTTYGLYRLGIKAESLTFDLLLASYLVDNEKNSNDLGELV 425

Query: 510 QKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           Q +  Y  K  L    K + + IP D   D+    H    +  I  L   L  +L   + 
Sbjct: 426 QGYDYYDLKTDLEVYGKGKNAKIPAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ 482

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y+ ++ P   V+++ME+ GI++    LK++  + +  L  LEE IY  +GE+FNL+S
Sbjct: 483 DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS 542

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF KL  P   KTKTG + T+ + L Q+    +P++ +ILE+RQ+SKI+STY 
Sbjct: 543 PKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLKE-QSPVVSDILEYRQISKIQSTYV 600

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
             L + I+KR  R+HT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   
Sbjct: 601 KGLLDVIDKRDGRIHTRYLQTLTATGRLSSVDPNLQNIPARTEEGKQIRKAFVPSSPDGY 660

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803
           + S DYSQIELR+LAH++    + + F+   DIH   A +IF ++ +++V+   RR AK 
Sbjct: 661 IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKA 720

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A ++I  YF ++PGI  Y+++     R+ GY ETI 
Sbjct: 721 VNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIM 780

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I++   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q
Sbjct: 781 HRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQ 840

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDEL+F+VP +E+ T  +I+   M+ A    + L VPL  +    ++W E
Sbjct: 841 VHDELIFDVPADELETIQKIVPSVMQAA----VKLDVPLVADAGWGHDWYE 887



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 154/290 (53%), Gaps = 11/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAF+A      K    +GL  NA+  F NML  +L    K+   SH  V
Sbjct: 8   LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQEDPSHILV 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR  +Y DYK  R K P  L  QLP +R   +  GI + E+  +EADDII T
Sbjct: 64  AFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGT 123

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
                 + G+ V ++S DKDL QL S    +Y T     K E    +H+ +  G+ P + 
Sbjct: 124 MAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTEF 183

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD  DN PG+  +G KTA  L+QEYG++EN+  +   +K+ K +EN++   + 
Sbjct: 184 IDMKALMGDPSDNYPGVAKVGPKTAFKLIQEYGSVENLYNHVDEMKKSKLKENLIASKDN 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           A L +KL  +  D P+ + L+ L  E  N   L  F + + F + +  +A
Sbjct: 244 ALLGKKLATINCDSPVEVTLDDLSYEGSNIDDLRRFYEKMNFRRFLADLA 293


>gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297]
 gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297]
          Length = 933

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/544 (35%), Positives = 318/544 (58%), Gaps = 22/544 (4%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGFEDIMLMSYVLDS------GR 500
           E+ + L   FE+   +K G++IK D    +   IS  R   D+ +M++V DS        
Sbjct: 393 EVFNKLIPLFEDHAIVKTGYDIKADYHWFNALNISPSRLLNDVQVMAFVYDSTLKRDKSL 452

Query: 501 SSH----DIASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           S+H     I ++  ++L  + K +     K+ K  +    +    + +   E ++ +L+L
Sbjct: 453 SAHFSHLSIDNLVIQYLQKSPKTVEDYLGKAGKRQLSPSAVKADDIGQWWAERADFVLRL 512

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
              L   L   +L  VY+ +++P+   ++ +E  G+++D + + ++S    ++L  +E  
Sbjct: 513 GQWLEQGLASRQLSRVYQEIERPLSKTLAAIEENGVKLDVEFVHELSTRFKRDLEDIERQ 572

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
            +DL+G +FNL SPKQL D+LF ++  P  +KT +G   T  + L ++   ++ + + IL
Sbjct: 573 AHDLAGVEFNLDSPKQLADVLFERMGLPVKSKTASGAPSTNEEVLTEL-AAEHELPRLIL 631

Query: 673 EWRQLSKIKSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           + R+L K+  TY D LP     +   QR+HT Y+     TGRL S +PNLQNIP++++ G
Sbjct: 632 QSRRLRKLVGTYTDPLPTMTIDHDGDQRLHTTYNQTGAQTGRLNSNDPNLQNIPVRSEEG 691

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           + IR+AF++P   ++++ADYSQIELRI+ H+++   L Q F    DIHR  AAE+ G+  
Sbjct: 692 RSIRKAFVAPQGYRIVAADYSQIELRIMTHLSQDANLIQAFREGKDIHRATAAEVMGIEE 751

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           E+VS + RR AK INF +IYG+S F LA QL I R+EA  Y+  YF R+PG+  Y+++T+
Sbjct: 752 EQVSAEQRRSAKAINFGLIYGMSAFGLARQLGISRTEAKTYVDAYFERYPGVRRYMDETR 811

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
               ++GYVET+FGRR++   I S     R   ER AINAP+QG+AADI + AM+ V   
Sbjct: 812 AEAAESGYVETVFGRRLYLPGIQSSNQIARKAAERTAINAPMQGTAADIIKMAMVDVDNW 871

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L +  L  +M++Q+HDELVFEV E+++   ++ +   M+       NL VPL V++    
Sbjct: 872 LSNSSLRARMIMQVHDELVFEVHEDDVAALTEGVRFRMQHCA----NLDVPLIVDVDTGA 927

Query: 971 NWQE 974
           +W+E
Sbjct: 928 SWEE 931



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 159/289 (55%), Gaps = 11/289 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS+++RAF+A P L+   +GL   AI G  +ML  LL    K    S  AV+FD
Sbjct: 8   VVLVDGSSYLFRAFHALPPLANS-EGLQTGAIKGVVSMLRNLL----KMYPDSPVAVVFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRNE+Y  YKANRP +PE L  Q+  +    +A G+P + I G EADD+I T   
Sbjct: 63  AKGPTFRNEMYDQYKANRPPMPEELREQIEPIHDCVRAMGLPLLCIPGVEADDVIGTLAA 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I + DKD+ QLVSP   L +T+K E +D+  V  K+G  P+KM+   AL 
Sbjct: 123 QATSCGRDCVISTGDKDMAQLVSPHVTLINTMKNETMDVPGVETKYGFGPDKMIDYLALM 182

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240
           GD +DNIPG+PG+G KTA  L+Q  G L++I      +K       K     + ++ E A
Sbjct: 183 GDKVDNIPGVPGVGEKTALALIQGLGGLDDIYSRLDEVKDLTFRGAKTMAAKLEQHKEQA 242

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            LS +L  ++ DV +   +  +  +  +  RL++  K  EF   +  ++
Sbjct: 243 YLSYELATIKLDVELETTINDIQPDPIDNDRLLALFKRFEFRTWVREMS 291


>gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 886

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/531 (38%), Positives = 323/531 (60%), Gaps = 16/531 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S LK+  E+    K   ++K     L+R GI   G   D++L SY++D+ ++S+D+  + 
Sbjct: 363 SPLKEMLEDSAVQKNVFDLKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNSNDLGELV 422

Query: 510 QKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           Q +  Y  K  L    K + + IP D   D+    H    +  I  L   L  +L   + 
Sbjct: 423 QGYDYYDLKTDLEVYGKGKNAKIPAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ 479

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y+ ++ P   V+++ME+ GI++    LK++  + +  L  LEE IY  +GE+FNL+S
Sbjct: 480 DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS 539

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF KL  P   KTKTG + T+ + L Q+    +P++ +ILE+RQ+SKI+STY 
Sbjct: 540 PKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLKE-QSPVVSDILEYRQISKIQSTYV 597

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
             L + I++R  R+HT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   
Sbjct: 598 KGLLDVIDERDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGY 657

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803
           + S DYSQIELR+LAH++    + + F+   DIH   A +IF ++ +++V+   RR AK 
Sbjct: 658 IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKA 717

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A ++I  YF ++PGI  Y++      R+ GY ETI 
Sbjct: 718 VNFGIVYGISDYGLSKNLDISRKQAKEFINEYFDQYPGIQAYMDWAVKDAREKGYAETIM 777

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I++   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q
Sbjct: 778 HRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQ 837

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDEL+F+VP +E+ T  +I+   M+ A    + L VPL  +    ++W E
Sbjct: 838 VHDELIFDVPADELETIQKIVPSVMQAA----VKLDVPLVADASWGHDWYE 884



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 156/290 (53%), Gaps = 11/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAF+A      K    +GL  NA+  F NML  +L    K+   SH  V
Sbjct: 5   LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQEDPSHILV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR  +Y DYK  R K P  L  QLP +R   +  GI + E+  +EADDII T
Sbjct: 61  AFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
                 + G+ V ++S DKDL QL S    +Y T     K E    +H+ +  G+ P + 
Sbjct: 121 MAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTEF 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD  DN PG+  +G KTA+ L+QEYG++EN+  +   +K+ K +EN++   + 
Sbjct: 181 IDMKALMGDPSDNYPGVAKVGPKTASKLIQEYGSVENLYYHVDEMKKSKLKENLIAGKDN 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           A L +KL  ++ D P+ + L+ L  E  N   L  F + + F + +  +A
Sbjct: 241 ALLGKKLATIKCDSPVEVTLDDLSYEGSNVDDLRRFYEKMNFRRFLADLA 290


>gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 887

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 324/527 (61%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR GI  +G + D++L SY++++  +S+D+  IA  
Sbjct: 367 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTQGLDYDMLLASYLINNENNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +   IP D   D ++  H     N I +L   L  KL   +   
Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIEKLKPELLKKLKEHEQDA 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++ME+ G++++   L Q+  E +  L  LE+ IY  +GEKFNL+SPK
Sbjct: 484 LFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLNSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 544 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKM-QSPIVSEILDYRQIAKIQSTYVKG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF ++  ++V+P MRRHAK +N
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVN 720

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I +Y++K     R  GY ETI  R
Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHR 780

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R   ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 781 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 840

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 179/331 (54%), Gaps = 21/331 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDIDPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    EK GF  T+++ D+DL QL S  T +  T     + E    EH+ +  G+ P + 
Sbjct: 122 FVDKGEKNGFTTTVVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E I  +   +K+ K +EN++   + 
Sbjct: 182 IDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSVEGIYDHIDEMKKSKLKENLINDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L++KL  +  D P+T+ ++ +  +  +  +L  F + + F K +  + A+    D+  
Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301

Query: 299 IEPV---------VLDINTTENKGIAIETEI 320
           +E V         V D+  TE   +    E+
Sbjct: 302 VEKVEYIVLNDDNVKDVKATEKDTVEFYLEM 332


>gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
 gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
          Length = 512

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 206/517 (39%), Positives = 321/517 (62%), Gaps = 24/517 (4%)

Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEIL--- 521
           ++K + + L R GI++    +DIML SY+ DS  ++ D+  +A  +  +     EI+   
Sbjct: 8   DLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGK 67

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
             ++ S+ +D +       H     +V+ +L   + P+L   + LH+Y+ ++ P+  +++
Sbjct: 68  GKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILA 122

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK   
Sbjct: 123 KMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTP 182

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY + L ++I +   ++HT
Sbjct: 183 AKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYINGLLDYI-QADGKIHT 239

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRIL 758
            +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+   L S DYSQ+ELR+L
Sbjct: 240 RFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDSYLFSCDYSQVELRVL 297

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           AH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + L
Sbjct: 298 AHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGL 357

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A  L I R EA ++I  YF ++P I +Y++      R+ GY ETI  RR    +I++   
Sbjct: 358 AKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNF 417

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+
Sbjct: 418 NIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEEL 477

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                ++   M++A      L VPL  +    +NW E
Sbjct: 478 DLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 510


>gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2]
 gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2]
          Length = 884

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 207/539 (38%), Positives = 327/539 (60%), Gaps = 18/539 (3%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501
           N L  +  + ++++  +    K GH++    L LH +GI   G E D+ L  Y+LD   +
Sbjct: 355 NVLQSDAATPIREWLADPERKKRGHDLHRTDLALHWHGIEFAGAEFDVQLAGYLLDPTDA 414

Query: 502 SHDIASIAQKW-LSYTRKE---ILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLL 556
           +  ++ +A K+ LS  R +     K  K  +P +D +SD   ++ A+  + V +Q   L 
Sbjct: 415 NQTLSGLAAKYGLSSIRPDDEVFGKGAKYKVPEMDVLSDHVARKAAVIEALVPVQQAELE 474

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           + ++   KL H    L+ P+  +++ ME  GI ++ + L+ +  E    + +L   IY +
Sbjct: 475 KTEM--HKLFH---ELEMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSI 529

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +G +FNL+SPKQLG+ILF KL  P   KTKTG + T A+ LE++    + I++NIL++R 
Sbjct: 530 AGVEFNLNSPKQLGEILFDKLGLPVIKKTKTG-YSTDAEVLEKL-APYHDIVQNILQYRT 587

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           ++K++STY + L   I+++T +VHT++      TGRL+S  PNLQNIPI+ + G+KIR+ 
Sbjct: 588 IAKLQSTYVEGLLKEISEKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRKIRKV 647

Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           F+ S P   +++ADYSQIELR+LA I+    L + F + +DIH   A+++FGV  E V  
Sbjct: 648 FVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVFGVPAEAVDS 707

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            MRR AK +NF I+YGIS + L+  L I R EAA +I +YF  F G+  Y++      ++
Sbjct: 708 DMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKR 767

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           +GYV+T+  RR +  EIN+   + R+  ER A+N PIQG+AADI + AM+ +  +L +  
Sbjct: 768 DGYVKTLLERRRYLPEINASNFNQRSFAERTAMNTPIQGTAADIIKLAMVQMDAALRERN 827

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L ++MLLQ+HDELVFEVP EE+ T  +++  +ME A    + L VPLK  +   +NW E
Sbjct: 828 LRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAA----LKLAVPLKAEVSYGSNWYE 882



 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 171/299 (57%), Gaps = 10/299 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S IYRAF+A P L+    G   NA+ GF  ML +LL+  +     +H  V 
Sbjct: 2   DKLMLIDGNSIIYRAFFAMPPLTNS-SGQQTNAVYGFTTMLLRLLEEHK----PTHILVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   +TFR++ Y DYK  R K P  L  Q PL++    AFGI   E+ G+EADDII T 
Sbjct: 57  FDAGKITFRHKGYEDYKGGREKTPPELSQQFPLLKELLTAFGIAQFELDGYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++ GF V +++ DKD++QL S    +  T K     E    E + +++G+ P +++
Sbjct: 117 SRTADEAGFNVLVVTGDKDMLQLASDHVTVGLTRKGVTEVETYGPEQIQERYGLKPLQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPGIPG+G KTA  LL +YG++E +L +   +K  K +E +  +A+ A
Sbjct: 177 DLKGLMGDTSDNIPGIPGVGEKTALKLLHQYGSVEEVLAHTDELK-GKMKERVETHADDA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           R+S++L  +  DV +   LE ++            L  LEF  L+ R++ + +  +A +
Sbjct: 236 RMSKELATIYRDVTLDKQLEDVVFSGLQAETAGPALAKLEFKSLLERLSLSGEVGSAGV 294


>gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism
           HF4000_APKG10H12]
          Length = 891

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/528 (36%), Positives = 310/528 (58%), Gaps = 11/528 (2%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507
           +   L    E+    KIGH++K D L L  + I +RG E D M+ SY+LD+ R++  + +
Sbjct: 366 VFGTLGPMLEDPQVRKIGHDLKRDMLWLAAHEIRLRGLELDTMIASYLLDATRTTPTVET 425

Query: 508 IAQKWLSYTR--KEILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +A +   Y     + ++ + +  P  D++    V  +A E +++ LQ    LR +L  E+
Sbjct: 426 VALEHAGYQALTADTVRGKGAKAPDFDRLPPDGVLAYACERADLPLQAAEPLRARLDQER 485

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +Y  L++P+I V++ +E  GIQ+  D L   S  +  +L  L+  IY L+GE+FN++
Sbjct: 486 LAELYRELEQPLIPVLADIETAGIQVATDALAVQSRRMDADLSELQSQIYTLAGEEFNIN 545

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SP+QL  ILF KL  P+  KT   +  +TA D+ +     + + + ++EWR + K+K TY
Sbjct: 546 SPRQLSAILFEKLALPTRKKTGKTRAASTAADVLEELAQHHALPRLVIEWRAVQKLKGTY 605

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D+LP  +   T RVHT ++ A   TGRL+S +PNLQNIPI+T LG++IRRAF++     
Sbjct: 606 VDALPQLVRPDTGRVHTSFNQAVAATGRLSSSDPNLQNIPIRTPLGREIRRAFVARDGHV 665

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           LISADYSQIELR+LAH++  T L Q F  + DIH   A  +FG +    + ++RR AK I
Sbjct: 666 LISADYSQIELRVLAHLSADTALTQAFIRNEDIHDKTALHVFGPDSGLDAHELRRRAKII 725

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           N++++YG + F L+  + +    A  +I  YF  +P +  +++   +  R++G V T+FG
Sbjct: 726 NYALLYGKTAFTLSRDIGVTPQAAQAFIDAYFEGYPAVRGFLDGVIDEARESGEVRTMFG 785

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR    E+ +    IR   ER  +N PIQG+AADI +RAMI +  +L     +  M+L +
Sbjct: 786 RRRLVPELRNRNGQIRAAAERVTVNMPIQGTAADILKRAMIDLAGALPP---SAPMILTV 842

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+ E P +E  + + ++   ME+A     +L VPL+V++ +  NW
Sbjct: 843 HDELLIEPPRDEADSVADLVRDRMERAA----DLTVPLRVDVGIGENW 886



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 165/295 (55%), Gaps = 6/295 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     LFL+DG++ +YRA++A   L+   DG   NA+ GF  ML KLL + + + +A+ 
Sbjct: 1   MPSTPRLFLIDGNNQMYRAYHALHGLT-GPDGRSTNAVYGFITMLRKLLSDQQPDLVAA- 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD    TFR+E+  DYKA R  +PE L+ Q+  V  A  A G+P +   GFEADD+
Sbjct: 59  ---AFDLKGPTFRHELAADYKATRRPMPEDLVEQVSWVHEACAALGVPVVTHAGFEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-IDIEHVIKKWGIPPEKM 179
           I T    A   G  V +++ DKD  QLV     +++   E    D   V++K+G+ P+++
Sbjct: 116 IGTLATQAVAAGLEVVVVTGDKDFFQLVGDRIRVFNPRDEGAWYDDAGVLEKFGVRPDQV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V + AL GD+ DN+ G+PGIG K A  LL ++G+L+ +L +A  + +KK R  + E+A+ 
Sbjct: 176 VDVLALMGDASDNVKGVPGIGEKGARELLADFGSLDWLLDHADELPKKKYRTALTEHADN 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           AR SR+LV L TDVP+    E       +  R  +    L F  L++  A T D 
Sbjct: 236 ARRSRELVRLVTDVPVPYEPERYRYRGADRTRCFTLFSELGFKSLVSEFAPTADS 290


>gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
 gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
          Length = 885

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 201/536 (37%), Positives = 315/536 (58%), Gaps = 16/536 (2%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503
           L    L +++++  +    K G ++   +L L  +GI+++G   DI L +Y+LD   S+ 
Sbjct: 358 LQASALGFVREWLADADMEKAGFDLHRTELSLAWHGIALKGISFDIQLAAYLLDPTDSTQ 417

Query: 504 DIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
            I+ +  K+    +        K  K  +P   +    +  H    ++ +  +  + R +
Sbjct: 418 SISGLCGKYGLPTVQADESVYGKGAKFKLPEAGV----LHGHIASKTDAVRSIAAIQREE 473

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L    +  +Y  L++P+  V++ ME+ GI+ D  +++Q+ AE+   +  +   +Y L+G 
Sbjct: 474 LEKTGMHKLYYDLEQPLSRVLAGMELQGIRCDASVIEQLGAELESRISDIMTKVYTLAGM 533

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SP+QLG++LF KL  P   KTKTG + T A  LE++    + II +IL +RQL+K
Sbjct: 534 EFNINSPRQLGEVLFEKLGLPVIKKTKTG-YSTDADVLEKLEP-YHEIIPSILLFRQLAK 591

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI- 738
           ++STY + L   I   T ++HT+Y      TGRL+S  PNLQNIPI+ + G++IR+AF+ 
Sbjct: 592 LQSTYVEGLLKEIRPNTGKIHTYYRQTIAATGRLSSQYPNLQNIPIRLEEGRQIRKAFVP 651

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           S P   +++ADYSQIELR+LAHI+    L + F   LDIH   A+++FGV  E V   MR
Sbjct: 652 SEPGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDLDIHTKTASDVFGVRPEDVDANMR 711

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R AK +NF I+YGIS F L+  L I R EAA +I++YF  F G+  Y++      R +GY
Sbjct: 712 RQAKAVNFGIVYGISDFGLSNNLNITRKEAAQFIEQYFAAFQGVRRYMDNIVAQARTDGY 771

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V T+  RR +  EI +   +IR+  ER A+N PIQG+AADI + AM+ + + L    L +
Sbjct: 772 VTTLLERRRYLPEIKASNFNIRSFAERTAMNTPIQGTAADIIKLAMVRMDEQLRARGLRS 831

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +MLLQ+HDELVFEVP +E+    +++   ME A    I L VPLK ++   +NW E
Sbjct: 832 RMLLQVHDELVFEVPADELELMKELVPQVMESA----IKLDVPLKADVSFGDNWYE 883



 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 175/302 (57%), Gaps = 10/302 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+DG+S  +RAFYA PLL+    GL  NA+ GF  ML KLL+    E   +H  V FD  
Sbjct: 6   LIDGNSIAFRAFYALPLLTNA-SGLHTNAVFGFTTMLLKLLE----EEQPTHMLVAFDAG 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
            +TFR+E Y +YK  R K P  L  Q PL++   QAFGI   E+ G+EADDII T T +A
Sbjct: 61  KITFRHEGYSEYKGGRQKTPSELSEQFPLIKELLQAFGISQFELSGYEADDIIGTLTRMA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184
           +++G  V ++S DKD++QL S    +  T K     ++     + +++G+ P +++ L+ 
Sbjct: 121 DEQGAEVLVVSGDKDMLQLASDQVTVAITRKGVGDVDRYSPALIHERYGLAPLQIIDLKG 180

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPGIPG+G KTA  LL EYG++E +L + + +K  K +E + ++ + A +S+
Sbjct: 181 LMGDTSDNIPGIPGVGEKTALKLLHEYGSVEGVLEHVADLK-GKMKEKVEQHKDDAIMSK 239

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           KL  +  +VP+      +     + P L   L+ LEF  L+ R+  T +   + +    L
Sbjct: 240 KLATIFREVPLDRGTSEMAYGGYDRPTLAGALRKLEFKSLLERLDLTGEGTGSTVAAAEL 299

Query: 305 DI 306
           ++
Sbjct: 300 NV 301


>gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032]
 gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032]
          Length = 879

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 204/507 (40%), Positives = 318/507 (62%), Gaps = 20/507 (3%)

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL-KSRKSSI 528
           + L  + + ++G + D++L SYV++  ++  D+AS+A+++   ++ + +++  K  K +I
Sbjct: 381 VALRWHDVDLKGVDNDVLLASYVVNPQKTYEDVASVAKEYGLNIALSDEKVYGKGAKQAI 440

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P     + +++EH    +  I  L  L    L       +YE L+ P+  ++ +ME  G+
Sbjct: 441 P----PEDELKEHLGRKAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGV 496

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D   L+ +  E++K L   EE I+ L+GE FN++SPKQLG ILF KL  P   KTKTG
Sbjct: 497 KVDIKRLENMGEELTKKLKEYEETIHRLAGETFNINSPKQLGVILFEKLGLPIIKKTKTG 556

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T+A  LE++    + II++IL +RQ+ K++STY + L     K T +VHT ++ A T
Sbjct: 557 -YSTSADVLEKLE-DKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALT 614

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765
            TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+K+   + +ADYSQIELR+LAHI++  
Sbjct: 615 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSKEGWLMFAADYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F   +DIH   A ++F V+ E+V+  MRR AK +NF I+YGIS + L+  L I R
Sbjct: 673 NLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 732

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EAA +I+RY   F G+  Y+E+     +Q GYV T+  RR +  +I S   +I++  ER
Sbjct: 733 KEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLLKRRRYIPDITSRNFNIKSFAER 792

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N PIQGSAADI ++AMI + + L++ KL T +LLQ+HDEL+FE P+EEI    +I+ 
Sbjct: 793 TAMNTPIQGSAADIIKKAMIDMARRLKEEKLQTNLLLQVHDELIFEAPKEEIAILEKIVP 852

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             ME A    + L VPLKV+     +W
Sbjct: 853 EVMENA----LQLDVPLKVDFASGPSW 875



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 170/299 (56%), Gaps = 9/299 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDG+S  YRAF+A PLLS    G+  NAI GF  +L K+L++ +     +H
Sbjct: 1   MTDKKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAIYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q+P +R    A+ +   E+  +EADDI
Sbjct: 56  MLVAFDAGKTTFRHETFKEYKGGRQKTPPELSEQMPFIRELLDAYQVKRYELPQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V I S DKDL QL +  T +  T K     E     H+ +K+G+ P
Sbjct: 116 IGTLAVEAEKDGFEVKIFSGDKDLTQLSTDHTTVAITKKGITEVEYYTPAHIEEKYGLRP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++ L GDS DNIPG+PG+G KTA  LL+++  +EN+L +   +  KK +E + E+
Sbjct: 176 DQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFETVENLLEHIDEVSGKKLKEKLEEF 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            E A +S++L  +  + PI +  + L  E  +  ++IS  K L F  L+ R+    + D
Sbjct: 236 KEQAVMSKELATILVEAPIDVSSKDLAYEGPHMDQVISLYKELGFQTLLERLGEAPETD 294


>gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus Y714s Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/463 (42%), Positives = 296/463 (63%), Gaps = 33/463 (7%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570
           K  K ++P + +    + EH +  +  I   W L RP           +L+VE       
Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG
Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL+ P   KTKTG + T+A  LE++    + I++NIL +RQL K++STY + L  
Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+   +  LI +AD
Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+
Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
            GIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR + 
Sbjct: 418 SGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+HDEL+
Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E P+EE+    +++   ME+A    + LRVPLKV+    + W
Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576


>gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
 gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
          Length = 887

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 323/527 (61%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR GI   G + D++L SY++++  +S+D+  IA  
Sbjct: 367 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +   IP D   D ++  H     N I +L   L  KL   +   
Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIEKLKPELLKKLKEHEQDA 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++ME+ G++++   L Q+  E +  L  LE+ IY  +GEKFNL+SPK
Sbjct: 484 LFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFTVKLKELEDKIYGQAGEKFNLNSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 544 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF ++  ++V+P MRRHAK +N
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVN 720

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I +Y++K     R  GY ETI  R
Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHR 780

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R   ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 781 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 840

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883



 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 179/331 (54%), Gaps = 21/331 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDIDPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    EK GF  TI++ D+DL QL S  T +  T     + E    EH+ +  G+ P + 
Sbjct: 122 FVDKGEKNGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E I  +   +K+ K +EN++   + 
Sbjct: 182 IDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSVEGIYDHIDEMKKSKLKENLINDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L++KL  +  D P+T+ ++ +  +  +  +L  F + + F K +  + A+    D+  
Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301

Query: 299 IEPV---------VLDINTTENKGIAIETEI 320
           +E V         V D+  TE   +    E+
Sbjct: 302 VEKVEYIVLNDDNVKDVKATEKDTVEFYLEM 332


>gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
 gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
          Length = 910

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 221/557 (39%), Positives = 320/557 (57%), Gaps = 40/557 (7%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG----ISM 483
           FIDL+  TS++            S + +   +    KI +N+K   + L  +      S 
Sbjct: 378 FIDLTAITSKEQNRAIATNPWWKSSIIELLLDSSIQKITYNLKELLIFLLNFLRTEITSA 437

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
              +DIMLM Y+L +G++   +  I Q +                  +K    Q  E+ +
Sbjct: 438 SCIDDIMLMHYILSAGKNDLSLNEIIQTY------------------NKSYSEQYSENKV 479

Query: 544 ENSNVILQLWLL-----LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                    WL      L  +L   KLLH Y  +D P+  ++  +E  GI+I+  LLK++
Sbjct: 480 --------CWLKNTFDNLMSELFKNKLLHCYYEIDLPICYILRNIENNGIKINVPLLKEL 531

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTAQDL 657
           SA++   +  LE+ IY + G++FN++SPKQLG+ILF  LK P +    KT  + T ++ L
Sbjct: 532 SAQLKHKIELLEQQIYKICGQEFNIASPKQLGEILFDVLKLPHAKVSQKTKSYSTDSEVL 591

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E ++     I   +L+WRQL+K+ +TY D+LP  IN  T R+HT     ST T RL+S  
Sbjct: 592 ENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRIHTTLLQTSTTTSRLSSHS 651

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G K+R AF++P   K++SADYSQIELRIL++ A I  L  VF    DI
Sbjct: 652 PNLQNIPIRSEYGLKVRSAFVAPQGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDI 711

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AA+IF +N ++V+ + RR AK INF +IYGIS F +A QL I  +EAA YI  YF 
Sbjct: 712 HSSTAAQIFKINADQVTEEHRRKAKAINFGVIYGISAFGVAKQLNISNTEAAQYINHYFQ 771

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I +Y+++TK F  +NGYV+ + GRR +   INS   + RN  +RAAINAPIQ +A+
Sbjct: 772 EYPSIRQYMDETKKFAVENGYVKNMIGRRCYIPLINSSNLTTRNFAQRAAINAPIQSTAS 831

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI   K +     A K+LLQ+HDELVFE+P E + TA  +I  +ME   +P  +
Sbjct: 832 DIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPNELVDTACNLIKCTMEN--IPYFS 889

Query: 958 LRVPLKVNIKVSNNWQE 974
              PLKV +K+ +NW E
Sbjct: 890 F--PLKVELKIGDNWGE 904



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 178/300 (59%), Gaps = 11/300 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   +FL+DG  FI+RA++    L+  H+G P+  + GF  M+  ++     E    +  
Sbjct: 26  KNKKIFLLDGYPFIFRAYFVNQDLT-SHNGNPIGGVYGFATMIMNIISEFNPE----YMV 80

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD     FR++IYP+YK++RP++P  L  Q PLVR   +   I  IE++G EADD+IA
Sbjct: 81  VVFDTGLDNFRHKIYPEYKSHRPELPSELKIQFPLVREIVKYLNINTIEMEGVEADDVIA 140

Query: 123 TYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +   +A K G A   + I+S+DKDL+QLV+    +YD +K++ I  +  I+K G+ P ++
Sbjct: 141 S---LANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYIREKETIEKLGVRPSQV 197

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               +LTGD  DNIPGIPGIG KTA  LL+++ +L NIL N + I   + R+ I E+ + 
Sbjct: 198 RDFLSLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQL 257

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L+ D+ + + +E+L     N  ++ + +    FT LI + +  +  + +++
Sbjct: 258 AELSWQLVGLKQDLNLNLSVENLRWSPPNAEQIRTLIHKFGFTSLITKASKLFKLELSHL 317


>gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
 gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
          Length = 886

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 323/527 (61%), Gaps = 18/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   E+E   K   ++K   + LHR GI   G + D++L SY++++  +S+D+  IA  
Sbjct: 367 LKHLLEDEKIKKNVFDLKRTTVGLHRLGIHAHGLDYDMLLASYLVNNENNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  +    K +   IP D I    +  H     N I +L   L  KL   +   
Sbjct: 427 YGDYSVKTDMEVYGKGKSEHIPDDDI----LFNHLASKVNAIEKLKEPLLKKLKEHEQDD 482

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++ME+ G++++   L Q+  E +  L  LE+ IY+ +GE+FNL+SPK
Sbjct: 483 LFDTIEIPTARVLAKMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYEQAGERFNLNSPK 542

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 543 QLGHILFEKLGLPVLKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 600

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 601 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 659

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF ++  ++V+P MRRHAK +N
Sbjct: 660 SCDYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVN 719

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I +Y+ K     R  GY ETI  R
Sbjct: 720 FGIVYGISDYGLSKNLGISRKRAKEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHR 779

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R   ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 780 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 839

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 840 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 882



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/322 (36%), Positives = 176/322 (54%), Gaps = 21/322 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVEPTHILV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKE-EKIDIEHVIKKWGIPPEKM 179
           +    E+ GF  TI++ D+DL QL S  T +  T   V E E    EH+ +  G+ P + 
Sbjct: 122 FATKGEENGFQTTIVTGDRDLTQLASDKTTVEVTKSGVSELEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+  +G KTA+ L Q+YG++EN+  +   +K+ K +EN++   + 
Sbjct: 182 IDMKALMGDNSDNYPGVTKVGPKTASRLTQKYGSVENLYEHVDEMKKSKLKENLINDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY----DCD 295
           A L++KL  +  D P+TI ++ +  +  +  +L  F + L F K +  +  +     D  
Sbjct: 242 AFLAKKLATIDRDSPVTIDIDDVKRQPVDYEKLRQFYEKLNFRKFLAELNASGKGQDDTA 301

Query: 296 AANIEPVVL------DINTTEN 311
              +E  VL      D+  TEN
Sbjct: 302 TEKVEYTVLDDHNFKDVKVTEN 323


>gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118]
          Length = 886

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 323/527 (61%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR GI   G + D++L SY++++  +S+D+  IA  
Sbjct: 366 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 425

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +   IP D   D ++  H     N I +L   L  KL   +   
Sbjct: 426 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIEKLKRELLKKLKEHEQDA 482

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++ME+ G++++   L Q+  E +  L  LE+ IY  +GEKFNL+SPK
Sbjct: 483 LFDTIEIPTACVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAGEKFNLNSPK 542

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 543 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 600

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 601 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 659

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF ++  ++V+P MRRHAK +N
Sbjct: 660 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVN 719

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I +Y++K     R  GY ETI  R
Sbjct: 720 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHR 779

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R   ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 780 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 839

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 840 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 882



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 180/330 (54%), Gaps = 20/330 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    EK GF  TI++ D+DL QL S  T +  T     + E    EH+ +  G+ P + 
Sbjct: 122 FAAKGEKTGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E I  +   +K+ K +EN++   + 
Sbjct: 182 IDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSVEGIYDHIDEMKKSKLKENLINDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L++KL  +  D P+T+ ++ +  +  +  +L  F + + F K +  + A+    D+  
Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301

Query: 299 IEPV--------VLDINTTENKGIAIETEI 320
           +E V        V D+  TE+  I    E+
Sbjct: 302 VEKVEYIVLNDNVKDVKATEDDTIEFYLEM 331


>gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
 gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
          Length = 887

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 211/527 (40%), Positives = 321/527 (60%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR GI   G + D++L SY++++  +S+D+  IA  
Sbjct: 367 IKHILEDEKIKKNVFDLKRSMVGAHRLGIHTHGLDYDMLLASYLVNNENNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +   IP D   D ++  H     N I  L   L  KL   +   
Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKINAIESLKKPLLEKLKDHEQDA 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++ME+ G+++    L Q+  E +  L  LE+ IY  +GEKFNL+SPK
Sbjct: 484 LFDTIEIPTARVLARMEMNGMKVKASTLIQLQNEFAVQLKELEDKIYSQAGEKFNLNSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 544 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF ++  K V+P MRRHAK +N
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPKDVTPLMRRHAKAVN 720

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I +Y++K     R+ GY ETI  R
Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAKEFIDNYFEQYPQIRDYMDKAVQEAREKGYAETIMHR 780

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++   ++R+  ER AIN+PIQGSAADI + AMI++ K LE+  L TKM+LQ+H
Sbjct: 781 RRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLEEMHLKTKMVLQVH 840

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 841 DELIFDVPKDELETVKKIVPEVMQSA----VRLDVPLIADSGWGHNW 883



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 180/331 (54%), Gaps = 21/331 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  D L  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDSLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    EK GF  TI++ D+DL QL S  T +  T     + E    EH+ +  G+ P + 
Sbjct: 122 FAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++   + 
Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L++KL  +  D P+TI ++ +  E  +  +L  F + + F K +  + A+    D A 
Sbjct: 242 AFLAKKLATIDRDSPVTIDIDDVKREPVDYEKLRQFYEKMNFRKFLAELNASGAGQDGAE 301

Query: 299 IEPV---------VLDINTTENKGIAIETEI 320
           +E V         V D+  TE   +    E+
Sbjct: 302 VEKVEYTVLNDDNVKDVKATEKDTVEFYLEM 332


>gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10]
 gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10]
          Length = 881

 Score =  363 bits (933), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 305/524 (58%), Gaps = 17/524 (3%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-- 512
           + ++E   K  ++ K   + L+RY  + +G   D++L +Y+LD+  +++DIA +A  +  
Sbjct: 364 WLKDEERKKFVYDAKRTYVALNRYTTAPKGIAFDVLLAAYLLDTNDTNNDIAGVAAHYGY 423

Query: 513 --LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
             +        K  K  +P D   +     H       I  L   L  +L  +    ++E
Sbjct: 424 DAIQSDEAIYGKGAKKGLPAD---EEDFFAHLARKVAAITNLTPKLTEELAAKNQTALFE 480

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P+  +++ MEITGI++D   L Q+  E ++ L  +EE IY  +GE FNL+SPKQLG
Sbjct: 481 EMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEAGETFNLNSPKQLG 540

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L  
Sbjct: 541 VILFEKMGLPVIKKTKTG-YSTAVDVLEQLKE-QAPIVEDILTYRQIAKIQSTYVEGLLK 598

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            I +   +VHT Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      +I S+D
Sbjct: 599 VI-QGDGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSD 657

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+  T L + F    DIH   A  +FG+   E V+P MRR AK +NF I
Sbjct: 658 YSQIELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGI 717

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + L+  L I R  A  YI  YF ++PG+  Y+E      +  GYVET++ RR +
Sbjct: 718 VYGISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRY 777

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   +IR   ER AIN PIQGSAADI + AMI + K L++ KLA  MLLQ+HDEL
Sbjct: 778 LPDINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDEL 837

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           VFEVPE E+     ++   ME+A    + L VPL  +      W
Sbjct: 838 VFEVPESELPRLDALVKEVMEQA----VALHVPLLTDSNWGKTW 877



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 158/296 (53%), Gaps = 12/296 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M     +N   +   +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNANGLHTNAIYAFHTMF----ENVMAKEQPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR  +Y DYK  R K P     Q+P +R    A G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTAMYEDYKGGRSKTPGEFKEQMPYIRELINALGVQYYELDNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +KE F V ++S D+DL QL +    +  TVK     E     HV +K+ G+ 
Sbjct: 119 IGTLANKVDKELFDVVVLSGDRDLTQLATEHVKVDITVKGVSEIESYTPAHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ ++ L GD+ DNIPG+  IG KTA  LL+EYG++E I  +   +K+ K +EN++ 
Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKKSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
             E A LS++L  +  D PI + ++ L  E  +  +L+ F + + F   + ++  T
Sbjct: 239 DREIAFLSKQLATIDVDAPIEVDVDKLKYEGKDLEKLVPFYQEMNFNSFLEKLQIT 294


>gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
          Length = 885

 Score =  363 bits (933), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 342/552 (61%), Gaps = 28/552 (5%)

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIM 490
           +V+ S D +    LTK+ L  L    E++   K   ++K   + LHR GI       D++
Sbjct: 351 NVYVSNDVS---LLTKQPLQTL---LEDQAVNKNVFDLKRTIVGLHRLGIKANNINYDML 404

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENS 546
           L SY++++  +S+D+  I Q +  Y  +  +    K +K++IP ++I  + +    +   
Sbjct: 405 LASYLVNNENNSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDEEIFFNHLAGKVL--- 461

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
             I  L   L  +L   +   +YE ++ P+ +V+++MEITG++ D   L Q+  +  + L
Sbjct: 462 -AIEALKPTLLKRLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRL 520

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             LE +IY  +GE+FN++SPKQLG ILF KL+ P   KTKTG + T+ + LEQ+    +P
Sbjct: 521 TELEADIYLEAGERFNINSPKQLGQILFEKLELPPIKKTKTG-YSTSVEVLEQLK-DQSP 578

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I++ +L++RQ++KI+STY   L + I +   RVHT Y    T TGRL+S++PNLQNIP++
Sbjct: 579 IVQKVLDYRQIAKIQSTYVKGLLDVI-QPDGRVHTRYQQTLTATGRLSSVDPNLQNIPVR 637

Query: 727 TDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            + G+KIR+AFI  P+ K   + S DYSQ+ELR+LAH++    + + F+   DIH   A 
Sbjct: 638 LEEGKKIRKAFI--PSNKDGYIFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAM 695

Query: 784 EIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +IF ++  ++V+  MRRHAK +NF I+YGIS + L+  L I R +A ++I  YF ++P I
Sbjct: 696 KIFHLDSPDEVTTNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPKI 755

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y++K  NF R+ GYVETI  RR +  +I++   ++R+  ER AIN+PIQG AADI + 
Sbjct: 756 KDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGGAADIIKI 815

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K L++  L +KML+Q+HDEL+F+VP +E+ T  +++   M+ A    ++L VPL
Sbjct: 816 AMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNA----VHLDVPL 871

Query: 963 KVNIKVSNNWQE 974
             +    ++W E
Sbjct: 872 VADSNWGHDWYE 883



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 165/289 (57%), Gaps = 17/289 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L R+ D      GL  NAI  F NML  +L    K+   SH
Sbjct: 6   LLLIDGNSVAFRAFYA---LYRQLDRFQNPEGLHTNAIYAFKNMLDVIL----KQENPSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y DYK  R K P  LL Q+P ++   +  GI + E+  +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKLYSDYKGGRQKTPGELLEQIPYIKEMLKDLGIKSYELVNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKE-EKIDIEHVIKKWGIPP 176
           I TY+ + E+ G+ V I+S DKDL QL S +T +Y T   V E E    EH+ +  G+ P
Sbjct: 119 IGTYSKMGEEAGYQVAIVSGDKDLTQLASDSTTVYVTKSGVSELEAFTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++ENI  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASNLIQKYGSVENIYKHIDEMKKSKLKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            + A L++ L  +    P+   L+ L  ++ N   L  F + + F + +
Sbjct: 239 KDKAFLAKTLATIDRTSPVEFKLDELKKQETNVVDLRKFYEQMNFRRFL 287


>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579]
          Length = 891

 Score =  363 bits (933), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 197/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  K+ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFCTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 416

 Score =  363 bits (933), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 186/409 (45%), Positives = 276/409 (67%), Gaps = 8/409 (1%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
           L +Y ++++P+  V++ MEI G+++D + L+ + +E+ + L  LE+ IY+ +GE+FNL+S
Sbjct: 10  LDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEFNLNS 69

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF KLK P   KTKTG + T    LEQ+  G +PI+ NIL++RQL+KI+STY 
Sbjct: 70  PKQLGVILFEKLKLPVIKKTKTG-YSTAVGVLEQLR-GMSPIVDNILQYRQLAKIQSTYI 127

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
           + L   ++K+  + HT Y+   T TGRL+S++PNLQNIP++ + G+KIR+AF+ S P  +
Sbjct: 128 EGLLKVVSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWE 187

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKT 803
           + S+DYSQIELR+LAHI+K   + + F+  +DIH   A  IF V+  ++V+P MRR AK 
Sbjct: 188 IFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKA 247

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  + I R +A  +I  Y   F G+ +Y+EK   F ++NGYVETIF
Sbjct: 248 VNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIF 307

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R+  ER A+N+PIQGSAADI + AMI++ + L++  L  KMLLQ
Sbjct: 308 NRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQ 367

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE P +EI     ++   M+ A    + L VPLKV  K    W
Sbjct: 368 VHDELIFEAPTKEIPLLEDMVPKVMDSA----VKLDVPLKVESKHGQTW 412


>gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 891

 Score =  363 bits (933), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 197/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  ++ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D D 
Sbjct: 458 ---VAEHVARKVHVLYDIKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDR 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIQKLEQLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 871

 Score =  363 bits (932), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 203/525 (38%), Positives = 321/525 (61%), Gaps = 26/525 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508
           L+ L+ F E+E   K+ H+ K     L++Y I ++GF+ D  + +Y++DS ++++++  +
Sbjct: 367 LNLLRTFMEDETVKKVIHDSKNLITFLNKYDIDIQGFDFDTAIAAYLIDSSKANYEVFDL 426

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
             ++L    K+I   +  S  +  I  S ++           +L+  L+  L  E +  +
Sbjct: 427 INRFL---EKDI---KSDSNDLKAICSSYLK-----------KLYEKLKEMLHKEDMDEL 469

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y +++ P+I V+S ME  G +I+QD L+++  +  + +   E+ IY+L+ E+FN+SSPKQ
Sbjct: 470 YYKVEHPLIYVLSSMESIGFKINQDKLEELRVKFKEQIEKTEKEIYELADEEFNVSSPKQ 529

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG ILF KL  P   KTKTG + T  + LE++    +PII  ++ +RQ++KI STY + L
Sbjct: 530 LGKILFEKLDLPVIKKTKTG-YSTNQEVLEKL-IDKHPIITKVMYYRQITKINSTYVEGL 587

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747
            N I+     +H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI   +   LIS
Sbjct: 588 KNVID-IDGCIHSNFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILIS 646

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            DYSQIELR+LAH+A    +   FE+  DIH   A+E+F V +++V+  MR +AK +NF 
Sbjct: 647 CDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFG 706

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I+YGIS F LA  L+I + EAA+Y+  YF R+P I EY+     + ++ GYV TI  RR 
Sbjct: 707 IVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRR 766

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
              EI S    ++ + ER A+NAPIQGSAADI + AM++V+  L +  L ++++LQ+HDE
Sbjct: 767 FIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELILQVHDE 826

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L+  V ++E     Q+++  MEKA    I L V L V++K    W
Sbjct: 827 LILNVKKDEFDIVKQLVIEEMEKA----IKLNVALDVDLKYGYTW 867



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/257 (40%), Positives = 148/257 (57%), Gaps = 9/257 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D +S + RAFYA P L+   DG+  NAI GF NML+K+    + E    +    FD
Sbjct: 4   LLILDSNSLMNRAFYALPPLTN-DDGVNTNAIYGFTNMLFKM----KDEINPDNIIATFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR++ Y +YKA R K+P  L  Q P+++   +  GI   EI GFEADDII T + 
Sbjct: 59  KKSPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCL 182
             E+    V I++ DKD +QL S  T +  T   V E  I D +  + ++ I P + + +
Sbjct: 119 FGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEFEITPTQFIDV 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+PG+G KTA  L++EYG+LE +L N   I  KK +EN+    E A  
Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSLEEVLKNIPEISGKKLKENLENNMEQAIF 238

Query: 243 SRKLVMLRTDVPITIPL 259
           S+KL  +  +VP+ I L
Sbjct: 239 SKKLATIMREVPLDINL 255


>gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171]
 gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171]
          Length = 877

 Score =  363 bits (932), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 197/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  K+ 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 897

 Score =  363 bits (932), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 197/511 (38%), Positives = 296/511 (57%), Gaps = 9/511 (1%)

Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKS 523
           H +K     L R G++  G  ED  LMS +L   R  H +  +A++  S    R     +
Sbjct: 391 HELKAAAHALARLGLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRNPADGA 450

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           ++ +  ++ +   +V   A   +  +  L   L   L  E+L  +Y  +++P++ V+ +M
Sbjct: 451 KRGAPGLEGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYREVERPLVPVLVEM 510

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TGI +D+  ++ +SAE  +++  LE  I+  +G  FN++S ++L  +LF +L+ P   
Sbjct: 511 ERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPFNVASTRELAQVLFVELELPVVK 570

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           + KTG   +T QD+ +     + + + +LE R LSK+K TY D+LP  ++    R+HT +
Sbjct: 571 RLKTG--PSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTF 628

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
             A   TGRL+S +PNLQNIP++T+L ++IR+AF++P   +L+SADYSQIELRILAH + 
Sbjct: 629 HQAGAATGRLSSSDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSD 688

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L Q F +  D+H   AAE FGV  E+V+P  RR AK +NF I YG+S F L+ +L +
Sbjct: 689 DPGLLQAFRDREDVHTRTAAETFGVPPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDL 748

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           P SEA   I RYF R+ G+  YIE      R  G   T+FGR     EI +   ++RN  
Sbjct: 749 PPSEAQGIIDRYFTRYAGVRRYIEWAVEEARAKGESRTLFGRARTMPEIGARNPALRNAA 808

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN PIQG+AADI + AMI VH +L   + A ++LLQ+HDELV EVPE E+     +
Sbjct: 809 ERTAINTPIQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELAPVEAL 868

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A      L+VPL+V +     W E
Sbjct: 869 VRREMEGAA----RLKVPLEVQVGHGQTWAE 895



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/291 (39%), Positives = 163/291 (56%), Gaps = 16/291 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGS FI+RA++A P LS    G+P NA+ GF NML K L    +E   +H A++FD
Sbjct: 4   LTLIDGSGFIFRAYHAIPHLS-TTKGIPTNAVYGFTNMLLKAL----REHAPTHVALVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FR++I P+YKANRP+ P+ L  Q PLVR   +A  +P IE  GFEADDIIAT   
Sbjct: 59  AGRRSFRHDIDPEYKANRPEAPDDLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAG 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVC 181
            A   G+ V +++ DKD  QLV     LYD + E            V KK G+ PE++V 
Sbjct: 119 RARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQVVE 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILE 235
            Q++ GD IDN+PGI G+G  TAA L++ +G  E +L     I        +K R+ ++ 
Sbjct: 179 YQSILGDKIDNVPGIAGVGEVTAAALIRHFGTTEAMLARPGEIPAAVSRGGEKLRDKVVA 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            AE  R +R+LV LR D+ +    E       +  R  +    LEF++L+ 
Sbjct: 239 NAERIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVK 289


>gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20]
 gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20]
          Length = 881

 Score =  363 bits (932), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 305/524 (58%), Gaps = 17/524 (3%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-- 512
           + ++E   K  ++ K   + L+RY  + +G   D++L +Y+LD+  +++DIA +A  +  
Sbjct: 364 WLKDEERKKFVYDAKRTYVALNRYTTAPKGIAFDVLLAAYLLDTNDTNNDIAGVAAHYGY 423

Query: 513 --LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
             +        K  K  +P D   +     H       I  L   L  +L  +    ++E
Sbjct: 424 DAIQSDEAIYGKGAKKGLPAD---EEDFFAHLARKVAAITNLTPKLTEELAAKNQTALFE 480

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P+  +++ MEITGI++D   L Q+  E ++ L  +EE IY  +GE FNL+SPKQLG
Sbjct: 481 EMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEAGETFNLNSPKQLG 540

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L  
Sbjct: 541 VILFEKMGLPVIKKTKTG-YSTAVDVLEQLKE-QAPIVEDILTYRQIAKIQSTYVEGLLK 598

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749
            I +   +VHT Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      +I S+D
Sbjct: 599 VI-QGDGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSD 657

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+  T L + F    DIH   A  +FG+   E V+P MRR AK +NF I
Sbjct: 658 YSQIELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGI 717

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + L+  L I R  A  YI  YF ++PG+  Y+E      +  GYVET++ RR +
Sbjct: 718 VYGISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRY 777

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   +IR   ER AIN PIQGSAADI + AMI + K L++ KLA  MLLQ+HDEL
Sbjct: 778 LPDINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLVKRLKEEKLAATMLLQVHDEL 837

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           VFEVPE E+     ++   ME+A    + L VPL  +      W
Sbjct: 838 VFEVPESELPRLDALVKEVMEQA----VALHVPLLTDSNWGKTW 877



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 158/296 (53%), Gaps = 12/296 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M     +N   +   +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNANGLHTNAIYAFHTMF----ENVMAKEQPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR  +Y DYK  R K P     Q+P +R    A G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTAMYEDYKGGRSKTPGEFKEQMPYIRELINALGVQYYELDNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +KE F V ++S D+DL QL +    +  TVK     E     HV +K+ G+ 
Sbjct: 119 IGTLANKVDKELFDVVVLSGDRDLTQLATEHVKVDITVKGVSEIESYTPAHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ ++ L GD+ DNIPG+  IG KTA  LL+EYG++E I  +   +K+ K +EN++ 
Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKKSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
             E A LS++L  +  D PI + ++ L  E  +  +L+ F + + F   + ++  T
Sbjct: 239 DREIAFLSKQLATIDVDAPIEVDVDKLKYEGKDLEKLVPFYQEMNFNSFLEKLQIT 294


>gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
 gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
          Length = 886

 Score =  363 bits (931), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 213/527 (40%), Positives = 319/527 (60%), Gaps = 16/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+    +   N K   + LHR G+ + G + D++L SY+L++  +++D+  +A  
Sbjct: 364 LKKLLEDPAVERDVFNAKAQLVGLHRLGVDLAGVDFDLLLASYLLNTSENANDLGVLAAA 423

Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +   T +E+  K  K +IP D   D     H  + +  I  L   L  +L   + L 
Sbjct: 424 HDYHQVQTDEEVYGKGAKRAIPAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLP 480

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE +++P+  V++ MEITGI +D   LK++ +++ +    LE+ IY  +GE+FN++SPK
Sbjct: 481 LYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPK 540

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF K+K P   KTKTG   +TA D+ +      PI+++IL +RQ+SK++STY   
Sbjct: 541 QLGVILFEKMKLPVIKKTKTGY--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITG 598

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   I++  Q++HT Y    T TGRL+S++PNLQNIP++ + G++IRRAF  S P  K+ 
Sbjct: 599 LLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIF 658

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805
           S+DYSQ+ELR+LAH+     +   F    DIH   A  IF +  E +V+P MRR AK +N
Sbjct: 659 SSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVN 718

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + LA  + + R +A ++I+ YF  FPG+ +Y+       +Q GYVET+  R
Sbjct: 719 FGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR 778

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  EI++   + R+  ER A+N PIQGSAADI + AMI + K+L++  L  +MLLQIH
Sbjct: 779 RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIH 838

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DELVFE PEEEI    +++   M+ A    + L VPLKV  K    W
Sbjct: 839 DELVFEAPEEEIAILEELVPSIMDSA----VKLDVPLKVESKSGATW 881



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 14/310 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L L+DG+S ++RAF+A      K     GL   AI GF  ML  +L+  + ++      
Sbjct: 4   QLLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDAAL---- 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E Y DYK +R K P  L+ QLP VR   +A G+ A E+  +EADDII 
Sbjct: 60  VAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEADDIIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEK 178
           T     ++ GF   I++ D+DL QL +  T +  T     + E+    ++ +K G+ P +
Sbjct: 120 TLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLGVTPRQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GDS DN PG+  IG KTA  L+QEYG+L+ +  N + +K+ KR+EN++   +
Sbjct: 180 YIDVKALMGDSSDNYPGVTKIGEKTAVSLIQEYGSLDGLYENIAAMKKSKRKENLINEEK 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT---TYDCD 295
            AR  + L  +R D P+ I L+ +  +  +   LI   + L+F   +  +         D
Sbjct: 240 IARECQDLATIRRDAPLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQEGGAQVD 299

Query: 296 AANIEPVVLD 305
            A IE  VLD
Sbjct: 300 QAPIEYQVLD 309


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 202/538 (37%), Positives = 308/538 (57%), Gaps = 19/538 (3%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504
            +E    L+     E   K  H+ K  +  L + G+++ G   D  L S +L   R  H 
Sbjct: 370 AEEAAGALRPLLSGE-LPKHAHDRKGVQHALAQLGLALGGPGADTDLASRLLLPTRREHA 428

Query: 505 IASIAQKWLSYTRKEILK-------SRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLL 556
           +A +A++ +     E+ +       +RKS  +P++ +   +V E A + +  +L L   L
Sbjct: 429 LADVARERIGC---ELPRDPSGGDAARKSERVPVEGLEVERVGEWAAQCAASLLDLAPAL 485

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
              L  E LL +Y  +++P++ V+ +ME  GI +D+  ++ +SAE  + +  LE  I+  
Sbjct: 486 ERALESEGLLPLYRDVERPLVPVLCEMERAGILVDRAAMEGMSAEFGRTMQDLEARIHAA 545

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +G  FN++S ++L  +LFT+L  P   + KTG   +T QD+ +     + + + +LE R 
Sbjct: 546 AGHPFNIASTRELAQVLFTELALPVLKRLKTG--PSTDQDVLEKLAEQHELPRLVLEHRA 603

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L+K+K TY D+LP  ++ R  R+HT +  A   TGRL+S +PNLQNIP++T+L ++IR A
Sbjct: 604 LAKLKGTYVDALPQLVDPRDGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRIRAA 663

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F++PP  +L+SADYSQIELRILAH +    L + F    D+H   AAE FGV   +V+  
Sbjct: 664 FVAPPGWRLLSADYSQIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVTSD 723

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MRR AK +NF I YG+S F L+ +L +P +EA   I RYF R+ G+  Y+EK     R  
Sbjct: 724 MRRIAKVLNFGIAYGLSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRYVEKAVEDARAT 783

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           G   T+FGR     EI +   ++RN  ER AIN PIQG+AADI + AMI VH +L     
Sbjct: 784 GESRTLFGRARAMPEIAARNPALRNAAERTAINTPIQGTAADIVKVAMIRVHDALAGDAR 843

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++LLQ+HDELV EVPE+E+     ++   M  A      L+VPL V + V ++W E
Sbjct: 844 RARLLLQVHDELVLEVPEDELAPVEALVRREMGGAA----QLKVPLDVEVGVGHSWAE 897



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 159/291 (54%), Gaps = 16/291 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGS F++RA++A P LS    G P NA+ GF  ML K L    +E   +H  ++ D
Sbjct: 4   LTLIDGSGFVFRAYHAIPHLSTTR-GTPTNAVYGFTTMLLKAL----REHAPTHVVLVMD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FRNEI P YKANRP+ P+ L  Q PLVR    A  +P IE  G EADD+IAT   
Sbjct: 59  AGRKSFRNEIDPAYKANRPEAPDDLQVQFPLVREVADALAVPRIEEPGVEADDVIATLAS 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVC 181
            A ++G+ V +++ DKD  QLV     LYD + E            V KK G+ P++++ 
Sbjct: 119 RAREQGWEVVVVTGDKDFGQLVDERLSLYDPMAEASGRGGWTGPGEVEKKLGVRPDQVIE 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILE 235
             A+ GD IDN+PGIPGIG  TAA L++ +G +E +L     IK       +K +E I+ 
Sbjct: 179 YMAILGDKIDNVPGIPGIGEVTAAALVRHFGTVEEMLRRPEEIKAALSRGGEKVKEKIVA 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             E  R +R+LV LR D+ +            +  R+ +    LEF++L+ 
Sbjct: 239 SEERIRKNRQLVSLRRDLVLPFAPGQFERRRPDEARVRALFSELEFSRLLK 289


>gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
          Length = 872

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 220/537 (40%), Positives = 330/537 (61%), Gaps = 36/537 (6%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510
           LK+ FE E F    H IK D LV   Y GI  +  + D  +M+Y+L+   S++D+  + +
Sbjct: 351 LKEIFEKEKFEFTTHEIK-DFLVKLSYKGIECKSKYMDTAIMAYLLNPSESNYDLDRVLK 409

Query: 511 KWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           K+L     + +E+    +    +++I +  + ++       +  L          EKL++
Sbjct: 410 KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLR---------EKLMN 460

Query: 568 VYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
             E +D          P+++V+  ME++G  +D+++LK++S +I+  +  + + IY  +G
Sbjct: 461 FIEEMDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAG 520

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
            +FN++SPKQL + LF KL  P   KTKTG + T ++ LEQ+    N I+ +I+E+RQL+
Sbjct: 521 YQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNNIVNDIIEYRQLT 578

Query: 679 KIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           K+KSTY D  LP  +     RVH+ +    T TGR++S EPNLQNIPI+ + G++IRRAF
Sbjct: 579 KLKSTYIDGFLP--LMDENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAF 636

Query: 738 ISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           I P TK   ++SADYSQIELR+LAH++    L + F N+ DIH   A+E+F V +EKV+P
Sbjct: 637 I-PRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTP 695

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           +MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF R+ G+ EYIEK   F ++
Sbjct: 696 EMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKE 755

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSAADI + AM+ V+  LE  K
Sbjct: 756 NGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLK 815

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L +K++LQ+HDELV +  ++E+    +I+  +ME      + L+VPL V I V  NW
Sbjct: 816 LKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENV----VQLKVPLVVEIGVGPNW 868



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/296 (38%), Positives = 180/296 (60%), Gaps = 10/296 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KL++  + + I    A+ FD
Sbjct: 4   FLVIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLIEEEKPDYI----AIAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y DYKA R  +PE L  Q+ L++   + F I  +E++G+EADDII T + 
Sbjct: 59  KKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIIEGFNIKILELEGYEADDIIGTISK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++   V +++ D+D +QLVS    +  + K     E+ D + V++++ I P + + L
Sbjct: 119 LAEEKEMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPHQFIDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPGIP IG KTA  LL+++G +EN+L N S++K  K +ENI    E A +
Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKDFGTIENLLQNLSQLKG-KIKENIENNKELAIM 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           S+KLV ++ D+PI I  E   +++ N  +L+     LEF  LI+ +    D +  N
Sbjct: 238 SKKLVTIKRDIPIEIDFEEYRVKEFNEEKLLEIFNKLEFFSLIDSIKKKNDVEIVN 293


>gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 868

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 180/407 (44%), Positives = 271/407 (66%), Gaps = 7/407 (1%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y  +++P++ V+ +ME  GI +D++ L     E+ KN+  L+E IY ++GE+FN++SP+
Sbjct: 467 LYRDVEEPLVPVLYRMEKAGILVDKEALLSYGEELKKNIAMLQEEIYAMAGEEFNINSPQ 526

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF K++ P G KTKTG   +TA D+ +    D PI+  ILE+R  SK+ STYA+ 
Sbjct: 527 QLGGILFEKMQLPGGKKTKTGY--STAVDVLEKLQEDYPIVGKILEYRTYSKLNSTYAEG 584

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L N++ +  QR+H  +    T TGRL+S EPNLQNIPI+T++G+  R  FI       + 
Sbjct: 585 LSNYVGE-DQRIHGSFQQMVTATGRLSSTEPNLQNIPIRTEMGRVFRSVFIPKEGSVFLD 643

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQ+ELR+LA ++K   L + +    DIHR+ A+E+F V +E+V+P++RR+AK +NF 
Sbjct: 644 ADYSQVELRLLASLSKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKAVNFG 703

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I+YGIS F L+  L I R EA +YI+RYF  +P + EY++    F R++ +V+T+FGRR 
Sbjct: 704 IVYGISAFGLSEGLSISRQEAKEYIERYFTSYPKVKEYLDGEVAFAREHSFVKTLFGRRR 763

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
              EI++     R+ +ER A+NAPIQG+AADI ++AM+ V + L +    ++++LQIHDE
Sbjct: 764 PLPEIHASNFMRRSFSERVAMNAPIQGTAADIIKKAMVIVDQKLSEKNCQSRIVLQIHDE 823

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+ EV +EE+ T   I+V +ME      ++L VPL V   V NNW E
Sbjct: 824 LLLEVVKEELETVKDILVSAMEHV----VSLPVPLIVEATVGNNWDE 866



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 164/297 (55%), Gaps = 18/297 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   + L+DG S + RAFY  P L+ K +G+P N I GF N+L+K ++    E +A    
Sbjct: 2   KREKILLIDGHSILSRAFYGVPFLNNK-EGIPTNGIYGFLNILFKEIEIEETEYVA---- 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD P  TFR++++P+YK  R  +PE L  Q+PL++   +   +P + ++GFEADDI+ 
Sbjct: 57  VAFDVPKPTFRHKLFPEYKGTRKGMPEELKEQVPLLQELLRKMHMPLLMMEGFEADDILG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIP 175
           T     + EG  V ++S D+DL+QL         P T   +T K      + V ++WG+ 
Sbjct: 117 TVAKQMQAEGKEVVVVSGDRDLLQLSDEHIKISIPKTSKGET-KVYSYYPKDVEEEWGVS 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR----- 230
           P + + L+AL GDS DNIPG+PG+G KTA  ++Q+Y ++E    +A   + K  R     
Sbjct: 176 PIEFIDLKALMGDSSDNIPGVPGMGEKTATWIIQKYKSIEEAYAHAEDSEFKVPRKPNAG 235

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           +++ E  E A+LS++L  +   VPI++       E+         ++  EF  L +R
Sbjct: 236 KDLKENFELAKLSKELATINIHVPISLNFSDCKWENYANSESKELIRKWEFRSLYSR 292


>gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
          Length = 887

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 323/527 (61%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR  I   G + D++L SY++++  +S+D+  IA  
Sbjct: 367 IKHILEDEKIKKNVFDLKRTMVAAHRLDIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +   IP D   D ++  H     N I  L   L  KL   +   
Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKINAIESLKKPLLEKLKDHEQDD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++E ++ P   V+++ME+ G++++   L Q+  E +  L  LE+ IY  +GEKFNL+SPK
Sbjct: 484 LFETIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLNSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 544 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 602 LLDVI-QSDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF ++  ++V+P MRRHAK +N
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVN 720

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I EY++K     R+ GY ETI  R
Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHR 780

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TK+++Q+H
Sbjct: 781 RRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVH 840

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/331 (36%), Positives = 184/331 (55%), Gaps = 21/331 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHILV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    EK GF  T+++ D+DL QL SP+T +  T     + E    EH+ +  G+ P + 
Sbjct: 122 FVDKGEKNGFTTTVVTGDRDLTQLASPSTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++   + 
Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIREKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L++KL  +  D P+T+ ++ +  +  +  +L  F + + F K +  + A+    D+  
Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301

Query: 299 IEPV---------VLDINTTENKGIAIETEI 320
           +E V         V D+  TE+  I    E+
Sbjct: 302 VEKVEYIVLNDDNVKDVKATEDDTIEFYLEM 332


>gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
 gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
          Length = 887

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 323/527 (61%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR  I   G + D++L SY++++  +S+D+  IA  
Sbjct: 367 IKHILEDEKIKKNVFDLKRTMVAAHRLDIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +   IP D   D ++  H     N I  L   L  KL   +   
Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKINAIESLKKPLLEKLKDHEQDD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++E ++ P   V+++ME+ G++++   L Q+  E +  L  LE+ IY  +GEKFNL+SPK
Sbjct: 484 LFETIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLNSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 544 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 602 LLDVI-QSDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF ++  ++V+P MRRHAK +N
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVN 720

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I EY++K     R+ GY ETI  R
Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHR 780

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TK+++Q+H
Sbjct: 781 RRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVH 840

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/331 (36%), Positives = 184/331 (55%), Gaps = 21/331 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHILV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    EK GF  T+++ D+DL QL SP+T +  T     + E    EH+ +  G+ P + 
Sbjct: 122 FVDKGEKNGFTTTVVTGDRDLTQLASPSTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++   + 
Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L++KL  +  D P+T+ ++ +  +  +  +L  F + + F K +  + A+    D+  
Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301

Query: 299 IEPV---------VLDINTTENKGIAIETEI 320
           +E V         V D+  TE+  I    E+
Sbjct: 302 VEKVEYIVLNDDNVKDVKATEDDTIEFYLEM 332


>gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15]
 gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15]
          Length = 891

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  K+ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
 gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
          Length = 882

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 206/512 (40%), Positives = 312/512 (60%), Gaps = 16/512 (3%)

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--K 522
           ++K   + L+R GI +   + D++L+SY+LD+  +S+D+ S+A++  +      E +  K
Sbjct: 376 DMKRTTVGLNRLGIQLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGK 435

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K +IP D   D     H       I  L   L  +L   +   +Y+ ++KPM +V++Q
Sbjct: 436 GVKRAIPED---DDVFFSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQ 492

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           MEI GI +D   LK + ++ ++ L  +E+ IY  +GE+FN++SPKQLG ILF ++K P  
Sbjct: 493 MEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLGHILFEEMKLPVI 552

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG   +TA D+ +    + PI+ NIL++RQ+SKI+STY   L + I+   Q+VHT 
Sbjct: 553 KKTKTGY--STAVDVLEKLAPEAPIVANILQYRQISKIQSTYVVGLLDAIHSADQKVHTR 610

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761
           Y    T TGRL+S++PNLQNIP++ + G+KIR+AF+ S    ++ S+DYSQIELR+LAHI
Sbjct: 611 YLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHI 670

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
                +   F+   DIH   A  IF +N  E+V+P +RR AK +NF I+YGIS + L+  
Sbjct: 671 TDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQN 730

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           + I R +A  +I  YF  +PG+ +Y+++     ++ GYVETI  RR +  +INS   + R
Sbjct: 731 IGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQR 790

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ER A+N PIQGSAADI + AMI +   L+   L   MLLQ+HDEL+FE P+EEI   
Sbjct: 791 SFAERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVL 850

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +++   M+ A    + L VPLKV     + W
Sbjct: 851 EKLVPSVMDSA----VQLAVPLKVESHYGDTW 878



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 164/305 (53%), Gaps = 11/305 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAF+A    L R    DGL  NAI GF  ML  ++    K    +   V
Sbjct: 5   LLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMI----KAVEPTDMLV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR  +Y +YK  R K P     Q+P ++    A+GI   E++ +EADDII T
Sbjct: 61  AFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A++ G+  T+++ D+DL QL +  T +  TVK     E     HV +K GI P ++
Sbjct: 121 LAAQADQTGYTTTVVTGDRDLTQLTTEHTTVAVTVKGVSEVEHYTPAHVEEKLGITPAQI 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ LTGD+ DN PG+  +G KTA  LL++YG +E I  N   +KQ K +E+++E  E 
Sbjct: 181 IDMKGLTGDTSDNYPGVTKVGEKTALKLLKQYGTMEGIYENIDAMKQSKMKEHLIEDREQ 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  ++ L  ++ D PI + L  L  +  +  +L +F + ++F   + ++    D  A  I
Sbjct: 241 AAQAKVLATIKRDAPIDVQLADLSYDGPDLDQLAAFYQKMDFQSFLKKLHLQSDEPATPI 300

Query: 300 EPVVL 304
           +  VL
Sbjct: 301 DYTVL 305


>gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 887

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 206/512 (40%), Positives = 312/512 (60%), Gaps = 16/512 (3%)

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--K 522
           ++K   + L+R GI +   + D++L+SY+LD+  +S+D+ S+A++  +      E +  K
Sbjct: 381 DMKRTTVGLNRLGIQLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGK 440

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K +IP D   D     H       I  L   L  +L   +   +Y+ ++KPM +V++Q
Sbjct: 441 GVKRAIPED---DDVFFSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQ 497

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           MEI GI +D   LK + ++ ++ L  +E+ IY  +GE+FN++SPKQLG ILF ++K P  
Sbjct: 498 MEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLGHILFEEMKLPVI 557

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG   +TA D+ +    + PI+ NIL++RQ+SKI+STY   L + I+   Q+VHT 
Sbjct: 558 KKTKTGY--STAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAIHSADQKVHTR 615

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761
           Y    T TGRL+S++PNLQNIP++ + G+KIR+AF+ S    ++ S+DYSQIELR+LAHI
Sbjct: 616 YLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHI 675

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
                +   F+   DIH   A  IF +N  E+V+P +RR AK +NF I+YGIS + L+  
Sbjct: 676 TDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQN 735

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           + I R +A  +I  YF  +PG+ +Y+++     ++ GYVETI  RR +  +INS   + R
Sbjct: 736 IGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQR 795

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ER A+N PIQGSAADI + AMI +   L+   L   MLLQ+HDEL+FE P+EEI   
Sbjct: 796 SFAERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVL 855

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +++   M+ A    + L VPLKV     + W
Sbjct: 856 EKLVPSVMDSA----VQLAVPLKVESHYGDTW 883



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 11/305 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAF+A    L R    DGL  NAI GF  ML  ++    K    +   V
Sbjct: 10  LLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMI----KAVEPTDMLV 65

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR  +Y +YK  R K P     Q+P ++    A+GI   E++ +EADDII T
Sbjct: 66  AFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDIIGT 125

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A++ G+  T+++ D+DL QL +  T +  TVK     E+    HV +K GI P ++
Sbjct: 126 LAGQADQTGYTTTVVTGDRDLTQLTTEHTTVAVTVKGVSEVERYTPAHVEEKLGITPAQI 185

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ LTGD+ DN PG+  +G KTA  LL++YG +E I  N   +KQ K +E+++E  E 
Sbjct: 186 IDMKGLTGDTSDNYPGVTKVGEKTALKLLKQYGTMEGIYENIDAMKQSKMKEHLIEDREQ 245

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  ++ L  ++ D PI + L  L  +  +  +L +F + ++F   + ++    D  A  I
Sbjct: 246 AAQAKVLATIKRDAPIDVQLADLSYDGPDLDQLAAFYQKMDFQSFLKKLHLQSDEPATPI 305

Query: 300 EPVVL 304
           +  VL
Sbjct: 306 DYTVL 310


>gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
 gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
          Length = 891

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  K+ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 882

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 206/512 (40%), Positives = 312/512 (60%), Gaps = 16/512 (3%)

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--K 522
           ++K   + L+R GI +   + D++L+SY+LD+  +S+D+ S+A++  +      E +  K
Sbjct: 376 DMKRTTVGLNRLGIQLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGK 435

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K +IP D   D     H       I  L   L  +L   +   +Y+ ++KPM +V++Q
Sbjct: 436 GVKRAIPED---DDVFFSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQ 492

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           MEI GI +D   LK + ++ ++ L  +E+ IY  +GE+FN++SPKQLG ILF ++K P  
Sbjct: 493 MEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLGHILFEEMKLPVI 552

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG   +TA D+ +    + PI+ NIL++RQ+SKI+STY   L + I+   Q+VHT 
Sbjct: 553 KKTKTGY--STAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAIHSADQKVHTR 610

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761
           Y    T TGRL+S++PNLQNIP++ + G+KIR+AF+ S    ++ S+DYSQIELR+LAHI
Sbjct: 611 YLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHI 670

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
                +   F+   DIH   A  IF +N  E+V+P +RR AK +NF I+YGIS + L+  
Sbjct: 671 TDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQN 730

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           + I R +A  +I  YF  +PG+ +Y+++     ++ GYVETI  RR +  +INS   + R
Sbjct: 731 IGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQR 790

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ER A+N PIQGSAADI + AMI +   L+   L   MLLQ+HDEL+FE P+EEI   
Sbjct: 791 SFAERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVL 850

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +++   M+ A    + L VPLKV     + W
Sbjct: 851 EKLVPSVMDSA----VQLAVPLKVESHYGDTW 878



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 11/305 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAF+A    L R    DGL  NAI GF  ML  ++    K    +   V
Sbjct: 5   LLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMI----KAVEPTDMLV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR  +Y +YK  R K P     Q+P ++    A+GI   E++ +EADDII T
Sbjct: 61  AFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A++ G+  T+++ D+DL QL +  T +  TVK     E+    HV +K GI P ++
Sbjct: 121 LAGQADQTGYTTTVVTGDRDLTQLTTEHTTVAVTVKGVSEVERYTPAHVEEKLGITPAQI 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ LTGD+ DN PG+  +G KTA  LL++YG +E I  N   +KQ K +E+++E  E 
Sbjct: 181 IDMKGLTGDTSDNYPGVTKVGEKTALKLLKQYGTMEGIYENIDAMKQSKMKEHLIEDREQ 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  ++ L  ++ D PI + L  L  +  +  +L +F + ++F   + ++    D  A  I
Sbjct: 241 AAQAKVLATIKRDAPIDVQLADLSYDGPDLDQLAAFYQKMDFQSFLKKLHLQSDEPATPI 300

Query: 300 EPVVL 304
           +  VL
Sbjct: 301 DYTVL 305


>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 887

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 205/531 (38%), Positives = 322/531 (60%), Gaps = 16/531 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S LK   E+    K   ++K     L+R GI       D++L SY++D+ ++S+D+  + 
Sbjct: 364 SPLKGMLEDSAVQKNVFDLKRTTYGLYRLGIKAESLSFDLLLASYLVDNEKNSNDLGELV 423

Query: 510 QKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           Q +  +  K  L    K + + IP D   D+    H    +  I  L   L  +L   + 
Sbjct: 424 QGYDYFDLKTDLEVYGKGKNAKIPAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ 480

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y+ ++ P   V+++ME+ GI++    LK++  + +  L  LEE IY  +GE+FNL+S
Sbjct: 481 DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS 540

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF KL  P   KTKTG + T+ + L Q+    +P++ +ILE+RQ+SKI+STY 
Sbjct: 541 PKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLKE-QSPVVSDILEYRQISKIQSTYV 598

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
             L + I++R  R+HT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   
Sbjct: 599 KGLLDVIDERDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGY 658

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803
           + S DYSQIELR+LAH++    + + F+   DIH   A +IF ++ +++V+   RR AK 
Sbjct: 659 IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKA 718

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A ++I  YF ++PGI  Y+++     R+ GY ETI 
Sbjct: 719 VNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIM 778

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I++   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q
Sbjct: 779 HRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQ 838

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDEL+F+VP +E+ T  +I+   M+ A    + L VPL  +    ++W E
Sbjct: 839 VHDELIFDVPADELETIQKIVPSVMQAA----VKLDVPLVADAGWGHDWYE 885



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 153/286 (53%), Gaps = 11/286 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAF+A      K    +GL  NA+  F NML  +L    K+   SH  V
Sbjct: 6   LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQEDPSHILV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR  +Y DYK  R K P  L  QLP +R   +  GI + E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
                 + G+ V ++S DKDL QL S    +Y T     K E    +H+ +  G+ P + 
Sbjct: 122 MAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD  DN PG+  +G KTA+ L+QEYG++EN+  +   +K+ K +EN++   + 
Sbjct: 182 IDMKALMGDPSDNYPGVAKVGPKTASKLIQEYGSVENLYNHVDEMKKSKLKENLIASKDN 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           A L +KL  +  D P+ + L+ L  E  N   L  F + + F + +
Sbjct: 242 ALLGKKLATINCDSPVEVTLDDLSYEGSNIDDLRRFYEKMNFRRFL 287


>gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
 gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
          Length = 872

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 222/553 (40%), Positives = 337/553 (60%), Gaps = 38/553 (6%)

Query: 439 STGKNTLTKEILSY--LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSY 494
           S GK+T+  ++     LK+ FE E F    H IK D LV   Y GI  +  + D  +M+Y
Sbjct: 335 SFGKDTVYIDVFQTEDLKEIFEKEDFEFTTHEIK-DFLVRLSYKGIECKSKYIDTAVMAY 393

Query: 495 VLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
           +L+   S++D+  + +K+L     + + I    +    I++I ++ + ++       +  
Sbjct: 394 LLNPSESNYDLDRVLKKYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFD 453

Query: 552 LWLLLRPKLIVEKLLHVYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           L          EKL++  E +D          P+++V+  ME++G  +D+++LK++S +I
Sbjct: 454 LK---------EKLMNFIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKI 504

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              +  + + IY  +G +FN++SPKQL + LF KL  P   KTKTG + T ++ LEQ+  
Sbjct: 505 DDRIGEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL-V 562

Query: 663 GDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             N I+ +I+E+RQL+K+KSTY D  LP  +     RVH+ +    T TGR++S EPNLQ
Sbjct: 563 PYNDIVSDIIEYRQLTKLKSTYIDGFLP--LMDENNRVHSNFKQMVTATGRISSTEPNLQ 620

Query: 722 NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           NIPI+ + G++IRRAFI P ++   ++SADYSQIELR+LAH++    L + F N+ DIH 
Sbjct: 621 NIPIREEFGRQIRRAFI-PRSRDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHL 679

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+F V +EKV+P+MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF R+
Sbjct: 680 RTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERY 739

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ EYIEK   F ++NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSAADI
Sbjct: 740 KGVKEYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADI 799

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ V+  L+  KL +K++LQ+HDELV +  ++E+    +I+  +ME      + L+
Sbjct: 800 IKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTYKDEVDIIKKILKENMENV----VQLK 855

Query: 960 VPLKVNIKVSNNW 972
           VPL V I V  NW
Sbjct: 856 VPLVVEIGVGPNW 868



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 177/286 (61%), Gaps = 10/286 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DGSS +YRA+YA P+L+   +GLP NA+ GF  ML KL++  + + IA    + FD
Sbjct: 4   FLIIDGSSLMYRAYYALPMLT-TSEGLPTNALYGFTMMLIKLIEEEKPDYIA----IAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y DYKA R  +PE L  Q+  ++     F I  +E++G+EADDII T + 
Sbjct: 59  KKAPTFRHKEYQDYKATRQAMPEELAEQVDYLKEIIDGFNIKTLELEGYEADDIIGTISK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++G  V +++ D+D +QLVS    +  + K     E+ D + +++++GI P++ + L
Sbjct: 119 LAEEKGMEVLVVTGDRDALQLVSDKVKIKISKKGITQMEEFDEKAILERYGITPQQFIDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+P IG KTA  LL+++G +EN++ N S++K  K +ENI    E A +
Sbjct: 179 KGLMGDKSDNIPGVPNIGEKTAIKLLKDFGTIENLIQNLSQLKG-KIKENIENNKELAIM 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           S++L  ++ D+PI I  E   ++  N  +L+     LEF  LI+ +
Sbjct: 238 SKRLATIKRDIPIEIDFEEYKVKKFNEEKLLELFNKLEFFSLIDNI 283


>gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
 gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
          Length = 924

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/526 (37%), Positives = 312/526 (59%), Gaps = 23/526 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASI 508
           LS L+   E+    K  H++K     L    I++RG  +D+ML SY+L+   ++H ++ +
Sbjct: 419 LSTLRPLLEDATIPKRVHDLKSTLRALSTQDIALRGAVDDVMLYSYLLNPTHTTHRLSDV 478

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
             ++ ++  +E   + ++ +P              E ++ I  L   LR ++  E  L V
Sbjct: 479 TARFRNHALRE---TGENELP--------------EAAHAIFTLAPTLREEVEREDTLKV 521

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           YE++D P+  V+  ME  G++ID ++L+ +   ++ ++  + + IY+ +G +FN++SPKQ
Sbjct: 522 YEQIDLPLAPVLLAMEQHGVRIDSEMLRALGDRLAADMHRVSQQIYEQAGHRFNINSPKQ 581

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LGD+LF K+  P   K   G+  +TAQD+ +     N + + +LE+RQL+K+KS Y DSL
Sbjct: 582 LGDVLFNKMNLPRPLKYGKGKVISTAQDVLEELAAHNDVPRLVLEFRQLAKLKSNYVDSL 641

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P   + +  RVHT +    T TGRL+S  PNLQNIP++T LG++IR AFI+ P +KL+SA
Sbjct: 642 PLLADSQG-RVHTTFHQVGTATGRLSSTNPNLQNIPVRTALGREIRAAFIAAPGRKLLSA 700

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR++AH ++   L   +    DIH + A+E+FGV  E +  + R  AK +NF I
Sbjct: 701 DYSQIELRLMAHFSEDPLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNFGI 760

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGISPF LA QL I + EA  YI  YF R+ G+  YI++     R+   V T+FGR   
Sbjct: 761 VYGISPFGLAQQLGIDQHEARQYIDTYFARYQGVRAYIDRVLEQTRREQRVRTLFGRVRP 820

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +I S  ++ R   ER A+N P+QG+AAD+ + AMI +   ++   L T M LQ+HDEL
Sbjct: 821 IPDIQSRNANQRGFAERTAVNTPLQGTAADLIKLAMIRIDARIKKKNLQTLMTLQVHDEL 880

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +F+VPE E+     ++ H ME      + L+VP+  +I +  NW++
Sbjct: 881 LFDVPEAEVEVVEDLVRHEMEHV----VELKVPIVADIGIGENWRD 922



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 170/305 (55%), Gaps = 32/305 (10%)

Query: 7   LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +FL+D  SFI+RA++A     P+ +R   G+P  A   F NM+ KL    R++     FA
Sbjct: 12  VFLLDSMSFIFRAYHAMQRQRPMSTRA--GVPTAATYVFVNMINKL----RRDFAPEFFA 65

Query: 63  VIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLVRLA 101
            +FD  A  FR+E                      Y  YKANR ++P  L  QLP +R A
Sbjct: 66  AVFDVSAPVFRDERAKAMATIRKWNAKTQKFDEVEYAGYKANREEMPADLAQQLPYIRRA 125

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
            +AF IP ++ +GFEADD+I T    A  +G  V ++S DKD+MQLV+    + +  K+ 
Sbjct: 126 LEAFRIPILQAEGFEADDVIGTLAREAAAQGHPVFVVSNDKDMMQLVNEQVKILNPAKDN 185

Query: 162 KI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
            + D E VI+  G+PPE+++ + AL GD+IDN+PG PGIG K +  L+Q++G++E  L  
Sbjct: 186 LVLDREKVIETLGVPPERVIDVMALRGDAIDNVPGAPGIGEKGSVDLIQQFGSVEAALDR 245

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           A+ +K+K  RE++    +   LS++LV +   VP+ + L+ +  +  +     +    LE
Sbjct: 246 AAEVKRKTYRESLENNRDNILLSKELVTIDCAVPLPLDLDAMRTQPPDAAACRTLFTELE 305

Query: 281 FTKLI 285
           FT L+
Sbjct: 306 FTSLL 310


>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
           Large Fragment Of Dna Polymerase I From Thermus
           Aquaticus
 gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
 gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex
           Wi Abasic Site
 gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna
           Pol In Complex With A Blunt-Ended Dna And Ddatp
 gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Ethylated Dttp
 gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Methylated Dttp
 gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidines
 gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidies
          Length = 540

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 70  REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 109

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 110 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 166

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 167 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 226

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 227 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 285

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 286 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 345

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 346 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 405

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 406 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 465

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 466 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 520

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 521 -LAVPLEVEVGIGEDW 535


>gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513]
 gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513]
          Length = 872

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 220/537 (40%), Positives = 330/537 (61%), Gaps = 36/537 (6%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510
           LK+ FE E F    H IK D LV   Y GI  +  + D  +M+Y+L+   S++D+  + +
Sbjct: 351 LKEIFEKEKFEFTTHEIK-DFLVKLSYKGIECKSKYMDTAIMAYLLNPSESNYDLDRVLK 409

Query: 511 KWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           K+L     + +E+    +    +++I +  + ++       +  L          EKL++
Sbjct: 410 KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLR---------EKLMN 460

Query: 568 VYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
             E +D          P+++V+  ME++G  +D+++LK++S +I+  +  + + IY  +G
Sbjct: 461 FIEEMDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAG 520

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
            +FN++SPKQL + LF KL  P   KTKTG + T ++ LEQ+    N I+ +I+E+RQL+
Sbjct: 521 YQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNNIVNDIIEYRQLT 578

Query: 679 KIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           K+KSTY D  LP  +     RVH+ +    T TGR++S EPNLQNIPI+ + G++IRRAF
Sbjct: 579 KLKSTYIDGFLP--LMDENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAF 636

Query: 738 ISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           I P TK   ++SADYSQIELR+LAH++    L + F N+ DIH   A+E+F V +EKV+P
Sbjct: 637 I-PRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTP 695

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           +MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF R+ G+ EYIEK   F ++
Sbjct: 696 EMRRVAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKE 755

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSAADI + AM+ V+  LE  K
Sbjct: 756 NGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLK 815

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L +K++LQ+HDELV +  ++E+    +I+  +ME      + L+VPL V I V  NW
Sbjct: 816 LKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENV----VQLKVPLVVEIGVGPNW 868



 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/296 (38%), Positives = 180/296 (60%), Gaps = 10/296 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KL++  + + I    A+ FD
Sbjct: 4   FLVIDGSSLMYRAYYALPMLT-TSEGLHTNALYGFTMMLIKLIEEEKPDYI----AIAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y DYKA R  +PE L  Q+ L++   + F I  +E++G+EADDII T + 
Sbjct: 59  KKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIIEGFNIKILELEGYEADDIIGTISK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++   V +++ D+D +QLVS    +  + K     E+ D + V++++ I P + + L
Sbjct: 119 LAEEKEMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPHQFIDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPGIP IG KTA  LL+++G +EN+L N S++K  K +ENI    E A +
Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKDFGTIENLLQNLSQLKG-KIKENIENNKELAIM 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           S+KLV ++ D+PI I  E   +++ N  +L+     LEF  LI+ +    D +  N
Sbjct: 238 SKKLVTIKRDIPIEIDFEEYRVKEFNEEKLLEIFNKLEFFSLIDSIKKKNDVEIVN 293


>gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
 gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/529 (37%), Positives = 299/529 (56%), Gaps = 5/529 (0%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDI 505
           K+I   L+  + +    KI  ++K   +   RYG  + G   DI+L SY+L+  R    I
Sbjct: 366 KDIWEILEPLWSDPGIAKISPDLKTAMIWGERYGHPLVGSVSDILLASYLLNPVRFDQTI 425

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            ++A   L        +     +    +       +A        +LW  L  +L  EKL
Sbjct: 426 ENVALLDLGLNLLSPRELAGRPLAASDLPLELAIGYAAGRGQAAFRLWPRLHQQLQQEKL 485

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
           L +YE L+ P++ V++ ME  GI++D D L++   E+ K L SLEE I++++GE F + S
Sbjct: 486 LRLYEDLELPVLRVLAAMETRGIRVDLDFLQRFGREVEKELASLEEEIHEMAGEPFLIQS 545

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           P QL  ILF +L+ P+  KTK     +T  ++       +PI   ++ +R L K+K+TY 
Sbjct: 546 PPQLAAILFDRLQLPTQKKTKGRTAYSTDNEVLTALADYHPIAAKVIAYRTLGKLKATYV 605

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D L   ++  + R+HT +  +   TGRL+S +PNLQNIP++ +LG ++R+AF+       
Sbjct: 606 DGLCKQVHPASGRIHTTFVQSVAATGRLSSRDPNLQNIPVRGELGAQLRQAFLPSSGYIF 665

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           IS DYSQIELR+LAH +    L Q F+   D+HR  AAE+FG++ E VS +MRR AK IN
Sbjct: 666 ISGDYSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPELVSREMRRQAKVIN 725

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F IIYG+S F LA QL + +  A D+I RYF R  G+  Y ++  +  RQ G+V T+ GR
Sbjct: 726 FGIIYGMSAFGLAKQLNVSQRLAQDFINRYFARHTGVKRYFDQALDTARQKGWVTTLLGR 785

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R     ++S   ++R   ER+A+N P+QGSAAD+ ++AM++V  +L    L+ ++LLQIH
Sbjct: 786 RRPIPHLHSSNRNLRQEAERSALNTPLQGSAADLIKKAMLAVEAALVHEGLSGRLLLQIH 845

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+ E P +E       +  +ME        LR PL V+I+   NW E
Sbjct: 846 DELLLEAPYQEQAATVDCLRRAMEGVA----QLRTPLVVDIQTGENWGE 890



 Score =  197 bits (501), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 111/283 (39%), Positives = 163/283 (57%), Gaps = 5/283 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+D SS++YRAF+A   L+    G P NAI G  NML K+L    +E   S+ A++FD
Sbjct: 19  ILLIDISSYLYRAFHAIRSLATSQ-GFPTNAIYGVTNMLLKVL----RERQPSYLALVFD 73

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+  YP YKA+RP +PE L+ QL  +R    A  +PA+E++G+EADD+IA    
Sbjct: 74  AKGPTFRHRRYPAYKAHRPGMPEDLVKQLGYIRQIITALNLPALEMEGYEADDLIAALAR 133

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G  V IIS DKDL+ L      ++D +K+     + + +K+G+PP  +V L+ALT
Sbjct: 134 QARAAGLRVEIISGDKDLLPLAQEGVTIWDPMKDVYFTPQVIQEKFGLPPAALVDLRALT 193

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD  DNIPG PGIG KTA  L+  + +L+N+  +   +K+KK +  + +Y E  RLSR L
Sbjct: 194 GDPSDNIPGAPGIGPKTALKLIGHFHSLDNLFAHLDEVKEKKLQNRLRDYQEQVRLSRDL 253

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           + L    P+    + L     +   L      LEF+KL   ++
Sbjct: 254 LRLEDQAPVAFDPDRLQPGPPDRAALRRLFAELEFSKLAKEIS 296


>gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2]
 gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2]
          Length = 881

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 214/536 (39%), Positives = 314/536 (58%), Gaps = 28/536 (5%)

Query: 456 FFENEHFL---------KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505
            FENE+F+         K  ++ K   + L+RY  + +G   D +L +Y+LD+  S++DI
Sbjct: 355 LFENEYFIAWLKNASSQKKVYDAKRTYVALNRYAAAPQGIVFDTLLAAYLLDTNDSNNDI 414

Query: 506 ASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           A +A+ +  Y  +       K  K  +P D   +     H       I  L + L  +L 
Sbjct: 415 AGVAKHYGFYAIQSDEAIYGKGVKRGLPAD---EEVFFAHLARKVAAINYLSVRLAKELA 471

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            +    ++  ++ P+  ++++MEITGI++D   L Q+  E ++ L  +E+ IY  +GE+F
Sbjct: 472 EKNQTALFTDMELPLSKILAEMEITGIRVDASRLHQMKGEFAERLHEIEQKIYQEAGEEF 531

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NL+SPKQLG ILF K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+
Sbjct: 532 NLNSPKQLGVILFEKMGLPVIKKTKTG-YSTAVDVLEQLKE-QAPIVEDILIYRQIAKIQ 589

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY + L   I +   +VHT Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+ P 
Sbjct: 590 STYVEGLLKVI-QGDGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFV-PR 647

Query: 742 TKKLI--SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMR 798
            K  +  S+DYSQIELR+LAHI+    L   F    DIH   A  +FG++  E+V+P MR
Sbjct: 648 AKDWVIYSSDYSQIELRVLAHISNDEHLKAAFVEGQDIHSSTAMRVFGISTPEEVTPNMR 707

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R AK +NF I+YGIS + L+  L I R  A  YI  YF ++PG+  Y+E+     +  GY
Sbjct: 708 RQAKAVNFGIVYGISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKDKGY 767

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           VET++ RR +  +INS   ++R   ER AIN PIQGSAADI + AMI + + L++ KL  
Sbjct: 768 VETLYHRRRYLPDINSRNFNLRTFAERTAINTPIQGSAADILKIAMIDLDRRLKEEKLQA 827

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            MLLQ+HDELVFEVPE+E+     ++   ME A    ++L VPL  +      W E
Sbjct: 828 TMLLQVHDELVFEVPEDELERLDALVKEVMENA----VSLHVPLLTDSNWGKTWYE 879



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 173/329 (52%), Gaps = 21/329 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R   ++GL  NAI  F  M     +N   +   +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNNNGLHTNAIYAFHTMF----ENVMAKEQPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR  +Y +YK  R K P     Q+P +R    A G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTAMYEEYKGGRSKTPGEFKEQMPYIRELITALGVQYYELDNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +KE F V ++S D+DL QL +    +  TVK     E    +HV +K+ G+ 
Sbjct: 119 IGTLAQKVDKEQFDVVVLSGDRDLTQLATDHVKVDITVKGVSEIESYTPDHVAEKYDGLA 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ ++ L GD+ DNIPG+  IG KTA  LL+EYG++E I  +   +K  K +EN+L 
Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKPSKMKENLLN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             ETA LS+KL  +  D P+ + ++ L  E  +  +LI F + + F   + ++      +
Sbjct: 239 DKETAFLSKKLATIDVDAPVDVAIDSLKYEGKDLDKLIPFYQEMNFNSFLEKLNVV--TE 296

Query: 296 AANIEPVVLDINT-------TENKGIAIE 317
              +E ++ D+ T       TE+  + IE
Sbjct: 297 PEEMEDILFDVVTEVTPEMFTEDMALYIE 325


>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
 gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1060

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/491 (39%), Positives = 290/491 (59%), Gaps = 21/491 (4%)

Query: 488  DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            D+ L +Y+LD  R+ + +  +A+++  +  +E         P D+  D   +   +   +
Sbjct: 579  DLKLAAYLLDPVRNRYYLVDVARQFFGWELEEG--------PADRPDDPACRTTQLLGRD 630

Query: 548  VILQLWLLLRP----KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
              L     LRP    +L    L  VY  ++ P++ V++ ME  GI +D+  L+++    +
Sbjct: 631  AAL--CARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFT 688

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            +    L E IY L+GE FN++S +QLG ILF +L  P   KTKTG + T A+ LE +   
Sbjct: 689  RRSQELAEQIYQLAGETFNINSTQQLGQILFERLGLPVVKKTKTG-YSTDAEVLETL-AA 746

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             +PI + +LE+R L K++ TY D L  HI     RVHT +      TGRL+S +PNLQNI
Sbjct: 747  RHPIAELVLEYRSLVKLQGTYVDGLAEHIGP-DGRVHTTFQQTVAATGRLSSTQPNLQNI 805

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+ + G+ +RRAF++PP  +L++ADYSQIELR+LAH +    L + F    D+H   A+
Sbjct: 806  PIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDEGLLEAFARGQDVHARTAS 865

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            EIFGV +E+V+P+ RR AK +NF + YG + + LA  LRI R++A  ++ RYF R+PG+ 
Sbjct: 866  EIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDYGLARALRIDRADARRFMDRYFERYPGVK 925

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             Y+E+T    RQ+G V T+ GRR    EI      IR   ER AIN PIQG+AADI + A
Sbjct: 926  RYMEETIRRARQHGEVTTLLGRRRPVPEIRHRVYHIRQNAERVAINTPIQGTAADIMKLA 985

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            MI V+++L    L  +++LQ+HDEL+ E PE+E+   + ++   ME A      L VPL 
Sbjct: 986  MIRVYRALAGEGLRARIVLQVHDELLVEAPEDEVPAVAALLRREMEGA----FPLAVPLV 1041

Query: 964  VNIKVSNNWQE 974
            V++K   NW E
Sbjct: 1042 VDVKAGTNWYE 1052



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/293 (37%), Positives = 164/293 (55%), Gaps = 10/293 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L L+DG S +YRAF+A P L+   DG+P NA+ GF  ML +LL+    E    + 
Sbjct: 7   RPDTKLVLIDGHSLMYRAFFALPPLA-TADGVPTNAVYGFLTMLLRLLE----EVAPQYI 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD     FR E +P YK +RP+ P+ L PQ PLV+    A G+  +E +GFEADD++
Sbjct: 62  GVAFDRGLPAFRVERFPAYKGHRPEQPDELRPQFPLVKDVLAAMGVATVEHEGFEADDLL 121

Query: 122 ATYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
            T  + A   G   V +++ D+D++QLV     +  T K     ++ D   + ++ GI P
Sbjct: 122 GTLAHRARAAGVDRVLLVTGDRDVLQLVGDGVEVLLTRKGISDLQRYDEARIREEMGIAP 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD  DNIPG+PGIG KTA  L+Q++G+LE +L        KK    + +Y
Sbjct: 182 AQFLDVKALMGDPSDNIPGVPGIGEKTALKLIQQFGDLETVLARPEAAGGKKLPGLLRQY 241

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           A+ ARLSR+L  +RTD P+    E       +   L   L  LEF  L++R+ 
Sbjct: 242 ADQARLSRELARIRTDAPVEFDPERFARRPPDPAVLRPLLLRLEFRSLVDRLG 294


>gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
 gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
          Length = 879

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/507 (40%), Positives = 317/507 (62%), Gaps = 20/507 (3%)

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL-KSRKSSI 528
           + L  + + ++G + D++L SYV++  +S  D+AS+A+++   ++ + +++  K  K +I
Sbjct: 381 VALRWHDVDLKGVDNDVLLASYVVNPQKSYEDVASVAKEYGLNIALSDEKVYGKGAKQAI 440

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P     + +++ H    +  I  L  L    L       +YE L+ P+  ++ +ME  G+
Sbjct: 441 P----PEDELKGHLGRKAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGV 496

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D   L+++  E++K L   EE I+ L+GE FN++SPKQLG ILF KL  P   KTKTG
Sbjct: 497 KVDLKRLEKMGEELTKKLKEYEETIHRLAGETFNINSPKQLGVILFEKLGLPIIKKTKTG 556

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T+A  LE++    + II++IL +RQ+ K++STY + L     K T +VHT ++ A T
Sbjct: 557 -YSTSADVLEKLE-DKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALT 614

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765
            TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+K+   + +ADYSQIELR+LAHI++  
Sbjct: 615 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSKEGWLMFAADYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F   +DIH   A ++F V+ E+V+  MRR AK +NF I+YGIS + L+  L I R
Sbjct: 673 NLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 732

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EAA +I+RY   F G+  Y+E+     +Q GYV T+  RR +  +I S   +I++  ER
Sbjct: 733 KEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLLKRRRYIPDITSRNFNIKSFAER 792

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N PIQGSAADI ++AMI + + L++  L T +LLQ+HDEL+FE P+EEI    +I+ 
Sbjct: 793 TAMNTPIQGSAADIIKKAMIDMARRLKEENLQTNLLLQVHDELIFEAPKEEIAILEKIVP 852

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             ME A    + L VPLKV+     +W
Sbjct: 853 EVMENA----LQLDVPLKVDFASGPSW 875



 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 169/299 (56%), Gaps = 9/299 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDG+S  YRAF+A PLLS    G+  NAI GF  +L K+L++ +     +H
Sbjct: 1   MTDKKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAIYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q+P +R    A+ +   E+  +EADDI
Sbjct: 56  MLVAFDAGKTTFRHETFKEYKGGRQKTPPELSEQMPFIRELLDAYQVKRYELPQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK GF V I S DKDL QL +  T +  T K     E     H+ +K+G+ P
Sbjct: 116 IGTLAVEAEKNGFEVKIFSGDKDLTQLSTDHTTVAITKKGITEVEYYTPAHIEEKYGLRP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++ L GDS DNIPG+PG+G KTA  LL+++  +EN+L +   +  KK +E + EY
Sbjct: 176 DQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFETVENLLEHIDEVNGKKLKEKLEEY 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            E A +S++L  +  + PI +  + L  E  +  ++IS  K L F  L+ R+    + D
Sbjct: 236 KEQAVMSKELATILVEAPIDVSSKDLAYEGPHMDQVISLYKELGFQTLLERLGEAPETD 294


>gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
 gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
          Length = 865

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 206/527 (39%), Positives = 324/527 (61%), Gaps = 19/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQK 511
            + + E++H  KI  + K     L ++G+ +  F+D++L  Y+L+ SG ++  +ASIA  
Sbjct: 351 FRDWIESDH-QKICLDAKQAAFALRKHGLKLTAFDDLLLAGYLLNLSGGTT--LASIAGH 407

Query: 512 WLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           ++     E   + K  K   P D +    +  +  E + +I  L+  ++ +L   +   +
Sbjct: 408 YMLMAPNEEAVLGKGAKRLAPADDV----LHPYLAEKARMIELLFPKVKEELKANQQFEL 463

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           YE L++P+  V+++ME TGI++D   L+++  +++  L  LE+ IY   GE+FN++SPKQ
Sbjct: 464 YETLERPLSGVLAEMEWTGIRVDVGTLQEMQHDLAGRLHDLEQLIYGEVGEEFNINSPKQ 523

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG ILF K++ P+  KTKTG + T A  LE++    +P+I +I+ +R+L K++STY + L
Sbjct: 524 LGVILFEKMELPAFKKTKTG-YSTAADVLEKLRPL-HPVIDHIMLYRELQKLQSTYVEGL 581

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
              I K   ++HT ++     TGRL+S+ PNLQNIP++ + G+KIR+AF+ S P   L +
Sbjct: 582 QKVI-KEDGKIHTRFAQTIAQTGRLSSVNPNLQNIPVRIEEGRKIRKAFVPSEPGWSLYA 640

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR++AH+++   L Q F +  DIH   A+ +FGV    V+  MRR AK +NF 
Sbjct: 641 ADYSQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSVFGVAPNDVTGNMRRQAKAVNFG 700

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           IIYGIS + L+  L I R EA D+I RYF  FP I  +++      R NG+VET+  RR 
Sbjct: 701 IIYGISDYGLSQNLNISRKEAQDFIDRYFELFPQIKLFMDAAIEKARMNGFVETLMNRRR 760

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  +INS   ++R   ER AIN PIQGSAADI ++AM+ VH +LE   L  ++LLQ+HDE
Sbjct: 761 NIPDINSKNFNLRGFAERTAINTPIQGSAADIIKKAMLDVHAALEQSPLRARLLLQVHDE 820

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+FE P+EE+     ++  +ME+     + L VPL+V+    ++W E
Sbjct: 821 LIFEAPDEELDALKTLVKQAMEQT----VQLSVPLRVDGDAGHSWYE 863



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/294 (37%), Positives = 167/294 (56%), Gaps = 19/294 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DG+S  YRAF+A P ++    G   NA  GF  ML KLL+    E   +H  V
Sbjct: 3   ENKLLLIDGNSLTYRAFFALPPMTDAQ-GRNTNAAYGFTMMLLKLLE----EEQPTHMLV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  + TFR+++Y +YK +R K P  L  Q P+VR   +A GI  +E+  +EADD+I T
Sbjct: 58  AFDASSETFRHDVYQEYKGSREKTPSELREQFPIVRDICEALGIQMMELHRYEADDLIGT 117

Query: 124 Y--TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK------WGIP 175
              T  A++    + I++ DKDL+QLV+    +  T K    D+  + ++       G+ 
Sbjct: 118 LAQTMPADR----IRIVTGDKDLLQLVTSQVEVLIT-KRGITDVLCMTEELFAETYGGLK 172

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +M+ L+ L GD  DNIPG+PGIG KTA  L+  YG++E +  +   +K  K++E ++ 
Sbjct: 173 PIQMIDLKGLMGDKSDNIPGVPGIGEKTAIKLISAYGSVEGLYEHVEDLK-GKQKEKVVA 231

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
             E ARLS++L  ++ DVP+ + L+ L + D +     S  ++L F  L NR A
Sbjct: 232 NEELARLSKELATIKLDVPLDVTLDDLQISDVDTQVPYSLFQSLGFKSLTNRFA 285


>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
 gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
          Length = 543

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 73  REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 112

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 113 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 169

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 170 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 229

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 230 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 288

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 289 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 348

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 349 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 408

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 409 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 468

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 469 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 523

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 524 -LAVPLEVEVGIGEDW 538


>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 887

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/531 (38%), Positives = 322/531 (60%), Gaps = 16/531 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S LK   E+    K   ++K     L+R GI       D++L SY++D+ ++S+D+  + 
Sbjct: 364 SPLKGMLEDSAVQKNVFDLKRTTYGLYRLGIKAESLTFDLLLASYLVDNEKNSNDLGELV 423

Query: 510 QKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           Q +  +  K  L    K + + IP D   D+    H    +  I  L   L  +L   + 
Sbjct: 424 QGYDYFDLKTDLEVYGKGKNAKIPAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ 480

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y+ ++ P   V+++ME+ GI++    LK++  + +  L  LEE IY  +GE+FNL+S
Sbjct: 481 DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS 540

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF KL  P   KTKTG + T+ + L Q+    +P++ +ILE+RQ+SKI+STY 
Sbjct: 541 PKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLKE-QSPVVSDILEYRQISKIQSTYV 598

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
             L + I++R  R+HT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   
Sbjct: 599 KGLLDVIDERDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGY 658

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803
           + S DYSQIELR+LAH++    + + F+   DIH   A +IF ++ +++V+   RR AK 
Sbjct: 659 IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKA 718

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A ++I  YF ++PGI  Y+++     R+ GY ETI 
Sbjct: 719 VNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIM 778

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I++   ++R+  ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q
Sbjct: 779 HRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQ 838

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDEL+F+VP +E+ T  +I+   M+ A    + L VPL  +    ++W E
Sbjct: 839 VHDELIFDVPADELETIQKIVPSVMQAA----VKLDVPLVADAGWGHDWYE 885



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 154/290 (53%), Gaps = 11/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAF+A      K    +GL  NA+  F NML  +L    K+   SH  V
Sbjct: 6   LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQEDPSHILV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR  +Y DYK  R K P  L  QLP +R   +  GI + E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
                 + G+ V ++S DKDL QL S    +Y T     K E    +H+ +  G+ P + 
Sbjct: 122 MAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD  DN PG+  +G KTA  L+QEYG++EN+  +   +K+ K +EN++   + 
Sbjct: 182 IDMKALMGDPSDNYPGVAKVGPKTAFKLIQEYGSVENLYNHVDEMKKSKLKENLIASKDN 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           A L +KL  +  D P+ + L+ L  E  N   L  F + + F + +  +A
Sbjct: 242 ALLGKKLATINCDSPVEVTLDDLSYEGSNIDDLRRFYEKMNFRRFLADLA 291


>gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
 gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
          Length = 907

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 208/583 (35%), Positives = 342/583 (58%), Gaps = 18/583 (3%)

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           T+D F S+P A   +   +    ++    +      + S+  TG   L +  L   K + 
Sbjct: 335 TVDHFPSEPAADGYAIYLENLSKNYHDSEVVAVAWTNGSEIFTGDARLLQADL--FKAWL 392

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW---- 512
            ++   K+  + K  K++L   GI   G  +D+++ SY+L +  +S+D+A +A+++    
Sbjct: 393 SDDQVTKVVFDAKRTKVMLDYLGIDFAGVVDDVLIGSYLLHARDNSNDLAEVAREFDMDD 452

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
           LSY      K  K  +P +      + EH     ++I +L   +RP+L   ++  +Y+++
Sbjct: 453 LSYDEAIYGKGAKRGVPEEA---ETMYEHIARKVHIIARLQETIRPQLEANQMDDLYQKI 509

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+  V++ +EI GI +D+  L  + AE  + +  LE +I+  +G +FN++SPKQLG I
Sbjct: 510 ELPLALVLANLEILGISVDKQQLVTMQAEFKEIIAGLEADIWKEAGHEFNVNSPKQLGVI 569

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF ++  P   KTKTG   +TAQD+ +   G  PII  IL +RQL+K++STY + L   I
Sbjct: 570 LFEEMGLPVIKKTKTGY--STAQDVLEKLAGQAPIIDLILNYRQLNKLQSTYVEGLQEFI 627

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYS 751
           ++   ++H+ +    T TGRL+S +PNLQNIPI+++ G+ IR+AF+      +I S+DYS
Sbjct: 628 HEDG-KIHSRFQQTLTSTGRLSSADPNLQNIPIRSEEGRSIRKAFVPSHEDWVIFSSDYS 686

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAHI+    + + F N  DIH   A +++ V  E+V+  MRR+AK +NF I+YG
Sbjct: 687 QIELRVLAHISGDKHMQEAFNNHEDIHTSTAMKVYNVPKEEVTSNMRRNAKAVNFGIVYG 746

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           IS + L+  L I R EA ++I  Y   +PG+  Y++      +++GYVET+F RR +  +
Sbjct: 747 ISDYGLSQNLNISRPEAKNFIDTYLENYPGVQAYMKDVVEKAKEDGYVETLFNRRRYLPD 806

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           + +   ++R+  ER A+N PIQG+AADI + AM+ + ++L++HKL   +LLQIHDELVFE
Sbjct: 807 LKAKNFNVRSFAERNAMNTPIQGTAADIIKIAMVKMDEALKEHKLKANLLLQIHDELVFE 866

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           VP++EI T  +++   M  A      L VPL++       W E
Sbjct: 867 VPKDEIETLEKLVTEIMGSAA----QLDVPLEIESNYGATWYE 905



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 151/294 (51%), Gaps = 12/294 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L L DGSS  +R+F+A   +      +G+  NA+  F  M+  +L+  +     +H  V 
Sbjct: 23  LVLFDGSSLAFRSFFAIQNIDSFVNKNGMHTNALFAFHEMMNNILEKEQ----PTHALVA 78

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    TFRNE + +YK  R   P     Q+P   +   AFG+   ++  +EADDII T 
Sbjct: 79  WDAGKTTFRNEFFDEYKGGRQSTPSEFREQMPFFNVLLDAFGVAHYDLTNYEADDIIGTL 138

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
                 E F V +IS DKDL QL      + D  K+   ++       +++  GI PE++
Sbjct: 139 AAKVAPEEFDVVVISGDKDLTQLARDNVRV-DITKKGVSELASYTPASIMEDMGITPEQI 197

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GDS DN PG+ GIG KTA  LL EYG++E +      +K+ KR+EN++   + 
Sbjct: 198 IDMKGLMGDSSDNYPGVSGIGEKTALKLLHEYGSMEAMYEQIDDMKKSKRKENLINEKDN 257

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A LS+KL  +  D P+ I L  L  +      L+SF K + F   ++R+    D
Sbjct: 258 AILSKKLARIELDAPVKIELSDLSYKGKQLEPLMSFYKDMNFNGFMSRLLENSD 311


>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
          Length = 932

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/531 (37%), Positives = 320/531 (60%), Gaps = 29/531 (5%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507
           I +  K F+ +E   K+ +++K   L+  +  + ++G + D ++ +Y+LD   +++ +A 
Sbjct: 414 IFAEAKPFWSSEKHRKLFYDVKSLWLLARQEDVEIQGIDGDGLIGAYLLDPLANNYSLAR 473

Query: 508 IAQKWLSY-----TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +A + + +       K++L +  +++ +  +                  L   +  KL  
Sbjct: 474 LAHELIDWKISPEAGKQVLPAEDAALAVAGL----------------FHLTPAMEAKLGE 517

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           E L  +Y  ++ P+  ++  ME  GI+++  +L+ ++ E++ ++  L+  I++L+GE FN
Sbjct: 518 ESLGKLYRDVELPLAPILGSMEWIGIKVNPKVLQDMAGELNSDIQKLQAEIHELAGETFN 577

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++S +Q G ILF KL  P   +TKTG + T  + LE+++   +PI+  +LE+RQL K+KS
Sbjct: 578 INSTQQFGKILFEKLGLPVIKRTKTG-YSTDVEVLEELS-DRHPIVPKVLEFRQLMKLKS 635

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-P 741
           TY + L   I+    R+HT ++ + T TGRL+S EPNLQNIP++ + G+ IR+AFI+P P
Sbjct: 636 TYVEGLLPLIDGPEGRIHTSFNQSVTATGRLSSTEPNLQNIPVRLEQGRHIRKAFIAPEP 695

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L++ADYSQIELRILAH++        F  + DIH   A+E+F V +  V+ +MRR A
Sbjct: 696 GWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPMGNVTREMRRRA 755

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF I+YGIS F L+  L + R EA +YI+ YF R+ G+  YI++     RQ G+V T
Sbjct: 756 KAVNFGIVYGISDFGLSRDLGVTRGEAKEYIEGYFRRYHGVRGYIDRIIAEARQQGFVTT 815

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           + GRR    ++       +N  ER A+N PIQG+AADI + AM+ + K+L+DH L T+ML
Sbjct: 816 LLGRRRRLPDLFVKNKIRQNFGERTAMNTPIQGTAADIIKAAMVKIPKALKDHGLKTRML 875

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+FEVPEEE+T  + +I   MEK     I + VPL V++K   NW
Sbjct: 876 LQVHDELIFEVPEEELTVVAPLIKRIMEKT----IEISVPLTVDVKKGANW 922



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 189/366 (51%), Gaps = 14/366 (3%)

Query: 4   ENHLFLV-DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +N +F+V DGSS ++RAFYA P +S    G+P NA+ GF  M  +L    R+E    + A
Sbjct: 10  KNSVFMVIDGSSLLHRAFYALPPMSSSQ-GVPTNAVYGFLTMFERL----RREYQPEYLA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V  D    TFR + +  YKA R   P+ L PQ  L++    A  I   E +GFEADDII 
Sbjct: 65  VCLDKSRTTFRTQTFEGYKAQRGATPDDLRPQFGLLKEVMAAHDIGVYEQEGFEADDIIG 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T + +A+++G    I++ D+D  QL+SP   +  T K     E+ D E + +K G+ P++
Sbjct: 125 TLSCLAKEKGIYTLIVTGDRDAWQLISPGVEVLLTRKGISEVERYDEEALKEKVGLSPKQ 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+ L GD+ DNIPG+PG+G KTA  LL+++G +E +      +K  K +E ++ + E
Sbjct: 185 IIDLKGLMGDTSDNIPGVPGVGEKTALKLLEQFGTMETLYDRVEEVK-GKLKEKLVTHKE 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS+KL  +  D+ I I  E L     +   L      LEF  L+  +      ++A 
Sbjct: 244 QAFLSKKLATIVCDMDIAIDWESLKRMQADPAVLRKLYTDLEFRSLLKNLPLPEGEESAE 303

Query: 299 IEPVVLDINTTENKG--IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                 + N   NK   +A  +  + D +I     + L+    K+  E    ++  E L 
Sbjct: 304 AVLFAKEGNEPPNKQAVLAKGSTKETDGSIDVQVDAPLNVSYQKVEDEGQRDEMLAE-LM 362

Query: 357 KLSQYP 362
           +L Q P
Sbjct: 363 RLGQEP 368


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 359 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 398

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 399 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 455

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 456 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 515

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 516 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 574

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 575 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 634

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 635 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 694

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 695 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 754

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 755 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 809

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 810 -LAVPLEVEVGIGEDW 824



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 30/296 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      I   
Sbjct: 5   FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI--- 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD+
Sbjct: 61  --VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170
           +A+    AEKEG+ V I++ DKDL QL+S           ++I + H          + +
Sbjct: 119 LASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 167

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K+G+ P++    +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    R
Sbjct: 168 KYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-R 226

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           E IL + +  +LS  L  +RTD+P+ +        D    RL +FL+ LEF  L++
Sbjct: 227 EKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 280


>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
           Polymerase I From Thermus Aquaticus
          Length = 538

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 68  REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 107

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 108 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 164

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 165 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 224

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 225 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 283

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 284 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 343

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 344 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 403

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 404 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 463

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 464 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 518

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 519 -LAVPLEVEVGIGEDW 533


>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
 gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 70  REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 109

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 110 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 166

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 167 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 226

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 227 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 285

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 286 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 345

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 346 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 405

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 406 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 465

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 466 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 520

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 521 -LAVPLEVEVGIGEDW 535


>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
           From T. Aquaticus Bound To A PrimerTEMPLATE DNA
          Length = 539

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 69  REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 108

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 109 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 165

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 166 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 225

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 226 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 284

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 285 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 344

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 345 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 404

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 405 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 464

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 465 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 519

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 520 -LAVPLEVEVGIGEDW 534


>gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264]
 gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264]
          Length = 877

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  ++ 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEV- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 178/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ ++ +      +I   ++L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVHVDDMVYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
 gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
          Length = 877

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 233/672 (34%), Positives = 371/672 (55%), Gaps = 41/672 (6%)

Query: 321 DRDTTIKTSQFSSLSDQTSKIN----SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376
           +R+  +   + + +S   + IN     E TP++  LE         I  +   +++   +
Sbjct: 227 NRNALLNNYEMAQMSKTLATINIQSPVEVTPEQCKLED--------IYTEDALEMIKRLE 278

Query: 377 IQQWVQKLETIGS-----ASFKIITDTMDA---FHSKPIAIAISTLDQKDDTSFKVETIF 428
            +  +Q+  ++ S       FK I +  DA   F     A  I     ++  +F V   F
Sbjct: 279 FKSMIQRFGSVTSTNDCEGGFKYINNPFDADPIFEQAKNADNIGVFIYRNKDNFGVSLCF 338

Query: 429 IDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            + +V+      GK     E  I+  ++     +  L I  NIK +  +L          
Sbjct: 339 NNDNVYY----IGKEGFVTEDYIIEKVRDLVNAKAELTI-LNIKENNDILEN--DDAESI 391

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHA 542
            DI + +Y+L+  ++++D   IA+++L        EI  K++K+  P D+I ++ + ++A
Sbjct: 392 FDISIAAYLLNPLQNTYDYDDIAREYLGMNVPAFDEIFPKTKKNETPSDEIPEN-ILKYA 450

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
             N+ V  +    L  KL   ++L +Y  ++ P+   +  ME  GI +  D LK+    +
Sbjct: 451 CYNAYVAYKAKDALTEKLKETEMLDIYNNVEIPLTYALYDMEQAGIMVAGDKLKEYGERL 510

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              + +LE++I+  +G +FN++SPKQLG+ILF +++ P G KTKTG + T+A  LE++  
Sbjct: 511 KTGIDALEKDIFAEAGHEFNINSPKQLGEILFGEMQLPGGKKTKTG-YSTSASVLEKLEP 569

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P +  ILE+RQL+K+KSTYAD L  +I +   R+H  ++   T TGR++S EPNLQN
Sbjct: 570 -DYPFVSKILEYRQLAKLKSTYADGLAVYIGE-DNRIHGKFNQTITATGRISSTEPNLQN 627

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++  LG++IR+ FI       I ADYSQIELRILAH++    L   + +S DIH   A
Sbjct: 628 IPVRMPLGREIRKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATA 687

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           + +F V +E+V+ + R +AK +NF I+YGIS F L+  L I R EA  YIK YF  +PGI
Sbjct: 688 SLVFHVPLEEVTKEQRSNAKAVNFGIVYGISSFGLSNDLSISRKEAEQYIKDYFISYPGI 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y++ +    ++ GY  T+FGRR    E+ S     R   ER A+N+PIQGSAADI + 
Sbjct: 748 KNYLDNSVKEAKEKGYSVTMFGRRRPIPELTSGNFMQRQFGERVAMNSPIQGSAADIMKI 807

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI+V K L++  L +K++LQ+HDEL+ E  E E+     I+  +ME+A     +L VPL
Sbjct: 808 AMINVAKELKEKDLKSKIVLQVHDELLIEAYENEVEQVKDILKRNMEQAA----HLNVPL 863

Query: 963 KVNIKVSNNWQE 974
            V+++V NNW E
Sbjct: 864 DVDVQVGNNWDE 875



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 176/327 (53%), Gaps = 22/327 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             L+DG S + RAFY  P+ +   +GL  NA+ GF N+++K++ + + +    + AV FD
Sbjct: 4   FVLIDGHSILNRAFYGVPIFTNS-EGLHTNAVFGFLNIMFKIIDSKQPD----YMAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ DYK  R  + E L  Q+P+++   Q   I  +E+ G+EADD+I T + 
Sbjct: 59  VHQPTFRHEMFKDYKGTRKPMMEELREQVPVIKELLQKMNITTVELPGYEADDVIGTLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             EK G  V +IS D+DL+QL S   T C+  T K     E+ + E V K + + P + +
Sbjct: 119 KGEKAGMEVDVISGDRDLLQLASDHITICIPKTKKGQTTVEEYNTEGVRKLYKVTPTEFI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GDS DNIPG+PGIG K A  ++ ++G++EN   +A  I   + R  +L   E A
Sbjct: 179 DVKALMGDSSDNIPGVPGIGEKGATAIISQFGSIENAYDHAEEISNTRNRNALLNNYEMA 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR---VATTYDCDAA 297
           ++S+ L  +    P+ +  E   LED      +  +K LEF  +I R   V +T DC+  
Sbjct: 239 QMSKTLATINIQSPVEVTPEQCKLEDIYTEDALEMIKRLEFKSMIQRFGSVTSTNDCEGG 298

Query: 298 --------NIEPVVLDINTTENKGIAI 316
                   + +P+       +N G+ I
Sbjct: 299 FKYINNPFDADPIFEQAKNADNIGVFI 325


>gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 887

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 321/527 (60%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR GI   G + D++L SY++++  +S+D+  IA  
Sbjct: 367 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +   IP D   D ++  H     N I  L   L  KL   +   
Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDA 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++ME+ G++++   L Q+  E +  L  LE+ IY  +GEKFNL+SPK
Sbjct: 484 LFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKKLEDKIYGQAGEKFNLNSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 544 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSKILDYRQIAKIQSTYVKG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF + + ++V+P MRRHAK +N
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 720

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I +Y+ K     R  GY ETI  R
Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHR 780

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R   ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 781 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVH 840

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883



 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 181/331 (54%), Gaps = 21/331 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    EK GF  TI++ D+DL QL S  T +  T     K E    EH+ +  G+ P + 
Sbjct: 122 FAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSKLEAYTPEHMKEVNGVTPSEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++   E 
Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKEK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L++KL  +  D P+T+ ++ +  +  +  +L  F + + F K +  + A+    D+  
Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301

Query: 299 IEPV---------VLDINTTENKGIAIETEI 320
           +E V         V D+  TE   I    E+
Sbjct: 302 VEKVEYIVLNDDNVKDVKATEADTIEFYLEM 332


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 363 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 402

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 403 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 459

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 460 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 519

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 520 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 578

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 579 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 638

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 639 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 698

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 699 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 758

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 759 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 813

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 814 -LAVPLEVEVGIGEDW 828



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 30/296 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      I   
Sbjct: 9   FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI--- 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD+
Sbjct: 65  --VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170
           +A+    AEKEG+ V I++ DKDL QL+S           ++I + H          + +
Sbjct: 123 LASLAKKAEKEGYEVHILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 171

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K+G+ P++    +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    R
Sbjct: 172 KYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-R 230

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           E IL + +  +LS  L  +RTD+P+ +        D    RL +FL+ LEF  L++
Sbjct: 231 EKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 284


>gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 70  REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 109

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 110 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 166

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 167 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 226

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 227 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 285

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 286 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 345

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 346 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 405

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 406 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 465

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 466 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 520

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 521 -LAVPLEVEVGIGEDW 535


>gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
 gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
          Length = 891

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 200/528 (37%), Positives = 320/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K++  N    K   + K   + L   G+ ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 372 FKEWLANGEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 431

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPGLEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 487

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D D L+ +  E++  L  +E+ IY L+G +FN++SPK
Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 547

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 605

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 606 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIAK   L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 664 MYAADYSQIELRVLAHIAKDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 723

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY+++     +Q GYV T+  
Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLN 783

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 843

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 844 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 887



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S++L  + TD PIT+ ++ +  +      LI   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKELATIITDAPITVHVDDMEYKGYETSDLIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
 gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
          Length = 871

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 202/525 (38%), Positives = 321/525 (61%), Gaps = 26/525 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508
           L+ L+ F E+E   K+ H+ K     L++Y I ++GF+ D  + +Y++DS ++++++  +
Sbjct: 367 LNLLRTFMEDETVKKVIHDSKNLITFLNKYDIDIQGFDFDTAIAAYLIDSSKANYEVFDL 426

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
             ++L    K+I   +  S  +  I  S ++           +L+  L+  L  E +  +
Sbjct: 427 INRFL---EKDI---KSDSNDLKAICSSYLK-----------KLYEKLKEMLHKEDMDEL 469

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y +++ P+I V+S ME  G +I++D L+++  +  + +   E+ IY+L+ E+FN+SSPKQ
Sbjct: 470 YYKVEHPLIYVLSSMESIGFKINKDKLEELRVKFKEQIEKTEKEIYELADEEFNVSSPKQ 529

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG ILF KL  P   KTKTG + T  + LE++    +PII  ++ +RQ++KI STY + L
Sbjct: 530 LGKILFEKLDLPVIKKTKTG-YSTNQEVLEKL-IDKHPIITKVMYYRQITKINSTYVEGL 587

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747
            N I+     +H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI   +   LIS
Sbjct: 588 KNVID-IDGCIHSNFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILIS 646

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            DYSQIELR+LAH+A    +   FE+  DIH   A+E+F V +++V+  MR +AK +NF 
Sbjct: 647 CDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFG 706

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I+YGIS F LA  L+I + EAA+Y+  YF R+P I EY+     + ++ GYV TI  RR 
Sbjct: 707 IVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRR 766

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
              EI S    ++ + ER A+NAPIQGSAADI + AM++V+  L +  L ++++LQ+HDE
Sbjct: 767 FIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELILQVHDE 826

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L+  V ++E     Q+++  MEKA    I L V L V++K    W
Sbjct: 827 LILNVKKDEFDIVKQLVIEEMEKA----IKLNVALDVDLKYGYTW 867



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/257 (40%), Positives = 148/257 (57%), Gaps = 9/257 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D +S + RAFYA P L+   DG+  NAI GF NML+K+    + E    +    FD
Sbjct: 4   LLILDSNSLMNRAFYALPPLTN-DDGVNTNAIYGFTNMLFKM----KDEINPDNIIATFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR++ Y +YKA R K+P  L  Q P+++   +  GI   EI GFEADDII T + 
Sbjct: 59  KKSPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCL 182
             E+    V I++ DKD +QL S  T +  T   V E  I D +  + ++ I P + + +
Sbjct: 119 FGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEFEITPTQFIDV 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+PG+G KTA  L++EYG+LE +L N   I  KK +EN+    E A  
Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSLEEVLKNIPEISGKKLKENLENNMEQAIF 238

Query: 243 SRKLVMLRTDVPITIPL 259
           S+KL  +  +VP+ I L
Sbjct: 239 SKKLATIMREVPLDINL 255


>gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
           polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
           Orientation For The Structure-Specific Nuclease Domain
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 362 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 401

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 402 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 459 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 518

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 519 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 577

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 578 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 637

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 638 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 697

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 698 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 757

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 758 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 812

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 813 -LAVPLEVEVGIGEDW 827



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 30/296 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      I   
Sbjct: 8   FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD+
Sbjct: 64  --VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170
           +A+    AEKEG+ V I++ DKDL QL+S           ++I + H          + +
Sbjct: 122 LASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 170

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K+G+ P++    +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    R
Sbjct: 171 KYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-R 229

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           E IL + +  +LS  L  +RTD+P+ +        D    RL +FL+ LEF  L++
Sbjct: 230 EKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 283


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 210/625 (33%), Positives = 338/625 (54%), Gaps = 19/625 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +++ ++  +  T+ +    ++L   G       T +++A  ++ + I++  L      + 
Sbjct: 289 LDDSAFQLLTTTEQLPTVCEELRAAGGLVIDTETTSLNALRAELVGISLCPLPAAATAAD 348

Query: 423 KVETI------FIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +        ++ +    +  S     L    +   L     +   LK+GHN+KYD  V
Sbjct: 349 NSQPTPPPTAWYLPIGHRLADGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQV 408

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L  +G+ +     D M+ SY++D GR SH +  ++ + L     +  E+    +      
Sbjct: 409 LKSHGLELAAPLADSMIASYLIDPGRRSHKLDDLSSELLERQLTSFAEVSAGDRRPEAFA 468

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +  +    ++ ++      LW L  P+L    L  +   ++  ++ ++++ME  GI +D
Sbjct: 469 YVEPAAACRYSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLGILVD 528

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQ 649
             +L ++  E  + L  LE  I +L+GE FN++SP+QLG++L+ +LK P G KTK  TG 
Sbjct: 529 PAVLDELEREFGRELARLESKIAELAGESFNINSPRQLGEVLYERLKLPHGRKTKGKTG- 587

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T  ++LE++    + +   ++  R LSK+KSTY D L   I+    RVHT ++   T 
Sbjct: 588 YSTDYRELERLAAYHD-LPAAVISHRNLSKLKSTYVDKLATLIDPADGRVHTTFNQTVTA 646

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+T  G+++R AF++      ++ADYSQI+LR+LAH +    L +
Sbjct: 647 TGRLSSSNPNLQNIPIRTPEGRRLRAAFVAAAGHLFLAADYSQIDLRVLAHYSGDPVLQE 706

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  DIH   AAEIF VN   VS  MRR AKTINF I+YG+S F LA QLR  R EA 
Sbjct: 707 AFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGMSAFGLAEQLRCSRKEAQ 766

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +I RYF  + G+  ++++     R++G+V T+  RR    EINS     R   ER AIN
Sbjct: 767 TFIDRYFELYQGVLRFMQEIVEQARRDGWVGTLLNRRRPLPEINSGNKMRREFAERTAIN 826

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AADI + A I+  ++L +    ++ LLQIHDEL+FEVP++E+     +I  +ME
Sbjct: 827 TPIQGTAADIIKLAAIACDRALREAGCRSEALLQIHDELIFEVPQDELAQVGPLIRQAME 886

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
           +     + L VPL VN+K   N  E
Sbjct: 887 EV----MELAVPLTVNLKSGPNLSE 907



 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 21/361 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M+K   ++L+DGS++I+RA++A TPL +R  DGLP +AI GF   L +++    +E  A 
Sbjct: 1   MKKPPPVYLIDGSAYIHRAYHAITPLTNR--DGLPTHAIYGFTTTLLRVI----REGEAR 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD     FR+++YP YKANRP +PE L  QLP ++    A+ I ++E +GFEADD
Sbjct: 55  HLAVVFDARGPNFRHQLYPQYKANRPAMPEDLACQLPYIKEIVAAYRITSLEREGFEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IA         G  V I+S DKDL+QLV P    +D + +  +D   V  K+ +PP K+
Sbjct: 115 LIAAAGRRLAAAGHRVVIVSGDKDLLQLVGPNITFWDPMGDRLLDAAAVEAKYQLPPAKL 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           +   AL GDS DNIPG+PG+G KTA  L++E+G+L+ +L N  ++   K R+ + ++ + 
Sbjct: 175 LDYFALIGDSSDNIPGVPGVGPKTAVKLIKEFGDLDQLLANLEQVSAPKLRQKLADHRDA 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A L+R+L+ L+ D+ I    E     + +  +L      L+F++L+   A   + D +  
Sbjct: 235 ALLARELIRLKDDLEIPATPEEYRQPEPDRGKLRQLFSQLDFSRLLQSEAAAEELDDSAF 294

Query: 300 E--------PVVLDINTTENKGIAIETEID-----RDTTIKTSQFSSLSDQTSKINSEQT 346
           +        P V +       G+ I+TE       R   +  S     +  T+  NS+ T
Sbjct: 295 QLLTTTEQLPTVCE-ELRAAGGLVIDTETTSLNALRAELVGISLCPLPAAATAADNSQPT 353

Query: 347 P 347
           P
Sbjct: 354 P 354


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 302/496 (60%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 362 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 401

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 402 AGERATLSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 459 LSLEVAEEIARLEAEVFRLAGHSFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 518

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 519 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 577

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 578 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 637

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I RYF
Sbjct: 638 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIGRYF 697

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 698 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 757

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 758 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 812

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 813 -LAVPLEVEVGIGEDW 827



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/296 (36%), Positives = 159/296 (53%), Gaps = 30/296 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      I   
Sbjct: 8   FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDSVI--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD+
Sbjct: 64  --VVFDAKAPSFRHEAYEGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170
           +A+    AEKEG+ V I++ DKDL QL+S           ++I + H          + +
Sbjct: 122 LASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 170

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K+G+ P++    +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R++    R
Sbjct: 171 KYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLERLLKNLDRLRPAI-R 229

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           E IL + +  +LS  L  +RTD+P+ +        D    RL +FL+ LEF  L++
Sbjct: 230 EKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 283


>gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
 gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
          Length = 884

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 200/535 (37%), Positives = 331/535 (61%), Gaps = 29/535 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            KK+  +    K   + K  K++ HR+G  ++G + D+ L++Y++D+     +I+ +A++
Sbjct: 364 FKKWLSDASVEKHLFDTKAAKVLAHRFGFDLKGAKYDVSLLAYLVDTNDIVKEISDVARR 423

Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR-PKLIVEKL- 565
                LS       K  K  IP DK          + N ++  +++ + + P+ ++++L 
Sbjct: 424 VDVTILSSDEAVYGKGVKIQIPEDK---------EVWNQHLAAKVFTIAKAPEKLLKRLE 474

Query: 566 ----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                H+Y  ++ P+ D++++MEI GI++D++ L ++  E  + L  +E+ IY+L+GE+F
Sbjct: 475 ENEQTHLYWEMELPLSDILARMEIQGIRVDRERLVEMGVEFEERLKEIEQEIYELAGEEF 534

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++S KQLG ILF K+  P   KTKTG   +TA D+ +      PI++ ILE+RQL+K+ 
Sbjct: 535 NINSTKQLGVILFEKMGLPVIKKTKTGY--STAVDVLEKLAHQAPIVELILEYRQLAKLN 592

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY + L  +I +   ++HT +    T TGRL+S++PNLQNIPI+T  G++IR AF+   
Sbjct: 593 STYVEGLQAYI-QEDGKIHTRFIQNLTQTGRLSSVDPNLQNIPIRTKEGRRIRYAFLPEH 651

Query: 742 TK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRR 799
              K++S+DYSQIELR+LAHIA    + + F+N++DIH   A  +FG+ N + V+ +MRR
Sbjct: 652 DDWKILSSDYSQIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRR 711

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF I+YGIS + L+  L I R  A ++I RY   F G+ +++E      R+  YV
Sbjct: 712 QAKAVNFGIVYGISDYGLSQNLNISRKRAKEFIDRYLEEFQGVKDFMESIVKEAREKDYV 771

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+F RR +  +I+S   ++R+  ER A+N+PIQGSAADI + AMI + + + + K    
Sbjct: 772 ETLFHRRRYLPDIHSSNFNLRSFAERTAMNSPIQGSAADILKMAMIELDREMRERKFKAN 831

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LLQ+HDEL+FEVP++E+ +   ++   ME A    ++L+VPL+ +  V +NW E
Sbjct: 832 LLLQVHDELIFEVPQDELESLQSLVEGVMENA----VSLKVPLRADSNVGDNWFE 882



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/284 (35%), Positives = 157/284 (55%), Gaps = 10/284 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L LVDGSS  +RAF++   L+R    +GL  NA+  F  M   +L + +     +H  V 
Sbjct: 6   LLLVDGSSLAFRAFFSILDLNRFKNSNGLHTNALYSFHRMFKSILDSEK----PTHVLVA 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    TFR E+Y DYK  R K P   + Q+P   +   A+GIP   +  +EADDII T 
Sbjct: 62  WDAGKTTFRTEMYADYKGGRSKTPGEFIEQMPYFNVLLDAWGIPHYRLNQYEADDIIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----VIKKWGIPPEKMV 180
               E+ G+ V ++S DKDL+QL      +  T K     +E+    + +K+G+ PE+++
Sbjct: 122 ARKGEEAGYEVVVLSGDKDLIQLADNNITVKITTKGVTELVEYTPEVIFEKYGLTPEQII 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GDS DN PG+  +G KTA  LLQE+G++E I  +   +K+ K +EN++   E A
Sbjct: 182 DMKGLMGDSSDNYPGVTKVGEKTAVKLLQEFGSVEGIYEHVDEMKKSKLKENLINDKELA 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            LS+KL  +  + PI I LE  + ++ +   L+SF K + F   
Sbjct: 242 FLSKKLARINVESPIEITLEDTLRKEQDVDALMSFYKEMNFNSF 285


>gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550]
 gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550]
          Length = 891

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  ++ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 178/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ ++ +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMVYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679]
          Length = 881

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 330/581 (56%), Gaps = 40/581 (6%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN  F       
Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L   I + 
Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             +VHT Y  A T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIE
Sbjct: 603 DGKVHTRYVQALTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVP
Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+E+ +  +++   ME+A    ++L VPL  +      W E
Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 12/293 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M   ++Q  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ 
Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A LS+KL  + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 362 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 401

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 402 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 459 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 518

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 519 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 577

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 578 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 637

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 638 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 697

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 698 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 757

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 758 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 812

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 813 -LAVPLEVEVGIGEDW 827



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/293 (37%), Positives = 157/293 (53%), Gaps = 24/293 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      I   
Sbjct: 8   FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD+
Sbjct: 64  --VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWG 173
           +A+    AEKEG+ V I++ DKDL QL+S       P   L        I    + +K+G
Sbjct: 122 LASLAKKAEKEGYEVRILTADKDLYQLLSDRIHALHPEGYL--------ITPAWLWEKYG 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P++    +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    RE I
Sbjct: 174 LRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-REKI 232

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           L + +  +LS  L  +RTD+P+ +        D    RL +FL+ LEF  L++
Sbjct: 233 LAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 283


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 184/411 (44%), Positives = 269/411 (65%), Gaps = 8/411 (1%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           EKLL +Y  ++KP+  V++ ME TG+++D   LK +S E+   L  LEE +Y L+G  FN
Sbjct: 423 EKLLWLYREVEKPLSRVLAHMEATGVRLDVAYLKALSLEVEAELKRLEEEVYRLAGHPFN 482

Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           L+S  QL  +LF +LK P+  KT KTG+  T+A  LE +    +PI++ IL+ R+LSK+K
Sbjct: 483 LNSRDQLERVLFDELKLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELSKLK 541

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D LP  ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IR+AF++  
Sbjct: 542 STYIDPLPGLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEE 601

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L++ DYSQIELR+LAH++    L +VF    DIH   A+ +FGV +E V P+MRR A
Sbjct: 602 GFLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRRAA 661

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT+NF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    RQ GYVET
Sbjct: 662 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEGGRQRGYVET 721

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGRR +  ++N+   S+R   ER A N P+QG+AAD+ + AM+ +   L++     +ML
Sbjct: 722 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLKE--TGARML 779

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+ E P++     + +    ME    P   L VPL+V + +  +W
Sbjct: 780 LQVHDELLLEAPKDRAEAVAALAKEVME-GVYP---LAVPLEVEVGIGEDW 826



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/286 (38%), Positives = 157/286 (54%), Gaps = 8/286 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L    KE     
Sbjct: 5   FEPKGRILLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKAL----KEDGYKA 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD+
Sbjct: 60  VFVVFDAKAPSFRHEAYEGYKAGRAPTPEDFPRQLALIKELVDLLGFARLEVPGYEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +A+    AE EG+ V I++ D+DL QLVS    +    +   I  E + +K+G+ PE+ V
Sbjct: 120 LASLAKKAEGEGYEVRILTADRDLYQLVSDRIAVLHP-EGHLITPEWLWEKYGLRPEQWV 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  
Sbjct: 179 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPESVREKIRAHLEDL 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           RLS +L  ++ D+P+ +        D  G R  +FL+ LEF  L++
Sbjct: 239 RLSLELSRVQADLPLEVDFAQGREPDREGLR--AFLERLEFGSLLH 282


>gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington]
 gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I
 gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi]
 gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 872

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 197/435 (45%), Positives = 275/435 (63%), Gaps = 10/435 (2%)

Query: 544 ENSNVILQLWLLLRPKLIV---EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           E++ +++    L +  L+     K   +Y  +D P   ++ +ME  GI++D + L Q+S 
Sbjct: 442 ESAKIVINFISLYKQTLLALQKNKAFRLYREIDLPTCFILDKMEKIGIKVDANYLHQLSD 501

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQ 659
           E    +L +EE I+ LSG KFN++S KQL +ILF K++ PSG    KT  + T A  L++
Sbjct: 502 EFGTEILKIEEEIFALSGTKFNIASQKQLSEILFKKMQLPSGNTLAKTSSYSTKAGILKK 561

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           ++     I   +L WRQL+K+K+TY DSLP  IN  T+R+HT +   ST TGRL+S EPN
Sbjct: 562 LSEDGYHIATLLLRWRQLTKLKNTYTDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPN 621

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP ++  G KIR+AFI+    KLISADYSQIELRIL+HIA +  L Q F N  DIH 
Sbjct: 622 LQNIPTRSSDGNKIRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHT 681

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A +IF +   +++ + RR AK INF IIYGIS F LA QL +    AA+YIK+YF  +
Sbjct: 682 QTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGTAAEYIKQYFAEY 741

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ EY+ +TK +  +NGYV   FGR+     I+  K  ++   ERAAINAPIQG++ADI
Sbjct: 742 KGMQEYMVQTKAYANRNGYVTNFFGRKCFIPLIHDKK--LKQFAERAAINAPIQGTSADI 799

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI + + +E  KL T+++LQIHDEL+FEVPE E+     II   ME +     N+ 
Sbjct: 800 IKIAMIKLAQEIEKRKLKTRLILQIHDELLFEVPEIELELVIPIIKKIMEYST----NID 855

Query: 960 VPLKVNIKVSNNWQE 974
           VP+   I+  NNW+E
Sbjct: 856 VPIITEIRAGNNWKE 870



 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/321 (39%), Positives = 186/321 (57%), Gaps = 6/321 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+N L L+DG  F++RA+YA   LS    G PV A+ GF +ML KLL + + +    +
Sbjct: 1   MTKKNTLLLIDGYGFVFRAYYAQQSLSSAK-GEPVGALYGFTSMLLKLLSDFKPQ----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A++FD     FR++IY +YKANRP  PE L+ QLPL+R          +E  G+EADDI
Sbjct: 56  GAIVFDSGGKNFRHKIYQNYKANRPTPPEDLIGQLPLIRDVASHLNFAILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL+S    +YD +K + I  + VI K+G  P+K+ 
Sbjct: 116 IATFATKTITLGKEVIIISSDKDLLQLMSKNIKIYDPIKCKYITEDDVIIKFGTTPDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  +I   K+R+ +    E A
Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQISSIKQRKTLQNSREAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S +L+ L ++V +   L +L     N  +LI FL+   F  L  RV   +     + E
Sbjct: 236 LISWRLIGLDSNVDLDFNLNNLEWSHPNSEKLIGFLQKYGFKSLYKRVENLFYIKINDHE 295

Query: 301 PVVLDINTTENKGIAIETEID 321
            +V D   TE K I+  +E++
Sbjct: 296 EIV-DNKVTEAKEISNASELE 315


>gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 872

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 221/553 (39%), Positives = 337/553 (60%), Gaps = 38/553 (6%)

Query: 439 STGKNTLTKEILSY--LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSY 494
           S GK+T+  ++     LK+ FE E F    H IK D LV   Y GI  +  + D  +M+Y
Sbjct: 335 SFGKDTVYIDVFQTEDLKEIFEKEDFEFTTHEIK-DFLVRLSYKGIECKSKYIDTAVMAY 393

Query: 495 VLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
           +L+   S++D+  + +K+L     + + I    +    I++I ++ + ++       +  
Sbjct: 394 LLNPSESNYDLDRVLKKYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFD 453

Query: 552 LWLLLRPKLIVEKLLHVYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           L          EKL++  E +D          P+++V+  ME++G  +D+++LK++S +I
Sbjct: 454 LK---------EKLMNFIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKI 504

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              +  + + IY  +G +FN++SPKQL + LF KL  P   KTKTG + T ++ LEQ+  
Sbjct: 505 DDRIGEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL-V 562

Query: 663 GDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             N I+ +I+E+RQL+K+KSTY D  LP  +     RVH+ +    T TGR++S EPNLQ
Sbjct: 563 PYNDIVSDIIEYRQLTKLKSTYIDGFLP--LMDENNRVHSNFKQMVTATGRISSTEPNLQ 620

Query: 722 NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           NIPI+ + G++IRRAFI P ++   ++SADYSQIELR+LAH++    L + F N+ DIH 
Sbjct: 621 NIPIREEFGRQIRRAFI-PRSRDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHL 679

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+F V +EKV+P+MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF R+
Sbjct: 680 RTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERY 739

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ +YIEK   F ++NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSAADI
Sbjct: 740 KGVKDYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADI 799

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ V+  L+  KL +K++LQ+HDELV +  ++E+    +I+  +ME      + L+
Sbjct: 800 IKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTYKDEVDIIKKILKENMENV----VQLK 855

Query: 960 VPLKVNIKVSNNW 972
           VPL V I V  NW
Sbjct: 856 VPLVVEIGVGPNW 868



 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 177/286 (61%), Gaps = 10/286 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DGSS +YRA+YA P+L+   +GLP NA+ GF  ML KL++  + + IA    + FD
Sbjct: 4   FLIIDGSSLMYRAYYALPMLT-TSEGLPTNALYGFTMMLIKLIEEEKPDYIA----IAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y DYKA R  +PE L  Q+  ++     F I  +E++G+EADDII T + 
Sbjct: 59  KKAPTFRHKEYQDYKATRQAMPEELAEQVDYLKEIIDGFNIKTLELEGYEADDIIGTISK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++G  V +++ D+D +QLVS    +  + K     E+ D + +++++GI P++ + L
Sbjct: 119 LAEEKGMEVLVVTGDRDALQLVSDKVKIKISKKGITQMEEFDEKAILERYGITPQQFIDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+P IG KTA  LL+++G +EN++ N S++K  K +ENI    E A +
Sbjct: 179 KGLMGDKSDNIPGVPNIGEKTAIKLLKDFGTIENLIQNLSQLKG-KIKENIENNKELAIM 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           S++L  ++ D+PI I  E   ++  N  +L+     LEF  LI+ +
Sbjct: 238 SKRLATIKRDIPIEIDFEEYKVKKFNEEKLLELFNKLEFFSLIDNI 283


>gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603]
 gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603]
          Length = 838

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/528 (37%), Positives = 316/528 (59%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K++  N    K   + K   + L   G+ ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 319 FKEWLANGEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRAVAKM 378

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +  +   +L   +   
Sbjct: 379 KETHAVKSDEEVYGKGAKRAVPEQEV----VAEHVARKVHVLYDVKQIFEEELEKNEQYE 434

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+ +D + L+ +  E++  L  +E+ IY+L+G +FN++SPK
Sbjct: 435 LFTELELPLARVLADMEVKGVTVDTERLRNMGEELAGRLKEMEQEIYELAGTEFNINSPK 494

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II  IL +RQL K+ STY + 
Sbjct: 495 QLGVILFENLNLPVLKKTKTG-YSTSADVLDKL-MDHHAIIPKILHYRQLGKLNSTYIEG 552

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   ++  + ++HT ++   T TGRL+S EPNLQNIPI+ + G+KIR+AFI  P+++   
Sbjct: 553 LLKVVHDDSSKIHTRFNQVLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFI--PSEEGWI 610

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIAK   L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 611 MYAADYSQIELRVLAHIAKDEGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 670

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  A ++I+RY   FPG+ EY+       +Q GYV T+  
Sbjct: 671 NFGIVYGISDYGLSQNLGITRKAAGEFIERYLESFPGVQEYMADIVKDAKQKGYVSTLLN 730

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 731 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 790

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EE+    +++   ME A    I L VPLKV+      W
Sbjct: 791 HDELIFEAPKEEVEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 834



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 150/268 (55%), Gaps = 9/268 (3%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML ++L+  +     +H  V FD    TFR++ Y DYK  R K P  L  Q P +R    
Sbjct: 2   MLMRILEEEK----PTHMLVAFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLD 57

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVK 159
           AF +P  E++ +EADDI+ T    A ++GF V +IS DKDL+QLVS  T  C+      +
Sbjct: 58  AFNVPRYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITE 117

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            ++   E + +K+ + P++++ ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  
Sbjct: 118 VDEYTKEALFEKYSLSPKQIIDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYE 177

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
           N  ++  KK +E +    E A +S++L  + TD PIT+ ++ +  +      LI   + L
Sbjct: 178 NLDQVSGKKLKEKLEANKEQALMSKELATIITDAPITVHVDDMEYKGYEPSDLIPMFENL 237

Query: 280 EFTKLINRVATTYDCDA-ANIEPVVLDI 306
            FT L+N++  T +  A A ++ +  DI
Sbjct: 238 GFTSLLNKLGVTPEETAPAELDDITFDI 265


>gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 872

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 219/537 (40%), Positives = 330/537 (61%), Gaps = 36/537 (6%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510
           LK+ FE E F    H IK D LV   Y GI  +  + D  +M+Y+L+   S++D+  + +
Sbjct: 351 LKEIFEKEKFEFTTHEIK-DFLVKLSYKGIECKSKYMDTAIMAYLLNPSESNYDLDRVLK 409

Query: 511 KWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           K+L     + +E+    +    +++I +  + ++       +  L          EKL++
Sbjct: 410 KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLR---------EKLMN 460

Query: 568 VYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
             E +D          P+++V+  ME++G  +D+++LK++S +I+  +  + + IY  +G
Sbjct: 461 FIEEMDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAG 520

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
            +FN++SPKQL + LF KL  P   KTKTG + T ++ LEQ+    N I+ +I+E+RQL+
Sbjct: 521 YQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNNIVNDIIEYRQLT 578

Query: 679 KIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           K+KSTY +  LP  +     RVH+ +    T TGR++S EPNLQNIPI+ + G++IRRAF
Sbjct: 579 KLKSTYINGFLP--LMDENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAF 636

Query: 738 ISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           I P TK   ++SADYSQIELR+LAH++    L + F N+ DIH   A+E+F V +EKV+P
Sbjct: 637 I-PRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTP 695

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           +MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF R+ G+ EYIEK   F ++
Sbjct: 696 EMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKE 755

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSAADI + AM+ V+  LE  K
Sbjct: 756 NGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLK 815

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L +K++LQ+HDELV +  ++E+    +I+  +ME      + L+VPL V I V  NW
Sbjct: 816 LKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENV----VQLKVPLVVEIGVGPNW 868



 Score =  207 bits (527), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 114/296 (38%), Positives = 179/296 (60%), Gaps = 10/296 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KL++  + + I    A+ FD
Sbjct: 4   FLVIDGSSLMYRAYYALPMLT-TSEGLHTNALYGFTMMLIKLIEEEKPDYI----AIAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y DYKA R  +PE L  Q+ L++   + F I  +E++G+EADDII T + 
Sbjct: 59  KKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIIEGFNIKILELEGYEADDIIGTISK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++   V +++ D+D +QLVS    +  + K     E+ D + V++++ I P + + L
Sbjct: 119 LAEEKEMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPHQFIDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPGIP IG KTA  LL+++G +EN+L N S++K  K +ENI    E A +
Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKDFGTIENLLQNLSQLKG-KIKENIENNKELAIM 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           S+KL  ++ D+PI I  E   ++D N  +L+     LEF  LI+ +    + +  N
Sbjct: 238 SKKLATIKRDIPIEIDFEEYRVKDFNEEKLLELFNKLEFFSLIDSIKKKNNVEIVN 293


>gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b]
 gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b]
          Length = 864

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 346/578 (59%), Gaps = 23/578 (3%)

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
           A   + ++ A+  L+Q  D  F+ + I + ++      + G  TL ++    +K++ E+E
Sbjct: 300 ALVDQDLSRAVLMLEQLHDDYFEEDVIGVAIASERGV-TIGDVTLLED--ERVKEWIEDE 356

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKE 519
               I  + K   + L R+ +++RG+ED+++  Y+L+ SG +S  ++SIA  + +Y  +E
Sbjct: 357 TKTTICLDAKQTIIQLKRHQLALRGYEDLLVAGYLLNLSGGTS--LSSIAAHF-TYPLEE 413

Query: 520 ----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P + +       H  E +  I  L+  +  +L   +   +YE L+KP
Sbjct: 414 DETVYGKGAKIKVPEENV----FHAHLAEKAYAIYTLFERVVSELKENEQTELYEALEKP 469

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           ++ V+++ME  GI ++ + L+ +  ++ + L +LE  I++L+GE FN++SPKQLG +LF 
Sbjct: 470 LVSVLAEMEWAGIHVNVETLQHMETDLRERLNALEITIHELAGEPFNINSPKQLGVVLFE 529

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL  P   KTKTG + T A  LE++    +PII+ I+ +R+L K++STY + L   + K 
Sbjct: 530 KLSLPPVKKTKTG-YSTAADVLEKL-APLHPIIEKIMHYRELGKLQSTYVEGL-QKVVKD 586

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIE 754
             ++HT Y+   T TGRL+S+ PNLQNIPI+ + G++IR+AF  S P   L + DYSQIE
Sbjct: 587 DGKIHTRYTQTLTQTGRLSSVNPNLQNIPIRLEEGRRIRKAFTASEPGWVLYAVDYSQIE 646

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+AH+++   +   F +  DIH   AA +F V+ E+V+  MRR AK +NF IIYGIS 
Sbjct: 647 LRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAEEVTSLMRRQAKAVNFGIIYGISD 706

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           + L+  L I R EA  +I  YF +FPG+  +++      R++G+VET+  RR +  +I+S
Sbjct: 707 YGLSQNLGITRKEAQTFIDTYFEQFPGVKTFMDAAIERAREHGFVETMLKRRRNIPDIHS 766

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
              ++R   ER AIN PIQG+AADI ++AMI V  +L   KL +K+LLQ+HDEL+FE P 
Sbjct: 767 RNFNLRGFAERTAINTPIQGTAADIIKKAMIDVDHALNASKLQSKLLLQVHDELIFEGPT 826

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EE+    +++  +ME+     + L VPL+ +  V   W
Sbjct: 827 EEMEALEKLVTEAMEQT----VTLDVPLRADGAVGTTW 860



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 176/304 (57%), Gaps = 20/304 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L ++DG+S  YRAF+A P +S    G   NA+ GF  ML KL+++ +     +HFAV 
Sbjct: 2   NKLLVLDGNSLTYRAFFALPPMS-DASGRNTNAVYGFTMMLLKLMEDEQ----PTHFAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ + +YK  R K P  L  Q PLVR   +AFGI  +E+  +EADDII T 
Sbjct: 57  FDASKKTFRHDTFAEYKGGRQKTPGELREQFPLVRDVCRAFGISVLELDQYEADDIIGT- 115

Query: 125 TYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDIEHVIKKW--GIPPEK 178
             +++   F  VT+++ DKDL+QL++    +Y T   + E +   E   K+   G+ P +
Sbjct: 116 --LSKDPTFDQVTVVTGDKDLLQLINERVTVYLTKRGITEVEKMTETAFKERYDGLQPIQ 173

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+ L+ L GD  DNIPGIPG+G KTA  L+  YG +E +  +   +K  K++E ++   +
Sbjct: 174 MIDLKGLMGDKSDNIPGIPGVGEKTALKLIATYGTVEALYEHTDELK-GKQKEKVVANEQ 232

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A++S++L  + TDVPI + ++ L+ +  +   + +    L+F  LI ++A     D ++
Sbjct: 233 EAKMSKQLATIYTDVPIDVTMDELVFKPYDASVVKTLFMDLQFKSLIGKLA-----DTSS 287

Query: 299 IEPV 302
            EPV
Sbjct: 288 EEPV 291


>gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 891

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  K+ 
Sbjct: 399 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 168/292 (57%), Gaps = 9/292 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           A +S+ L  + TD PIT+ ++ +  +      ++   ++L FT L+N++  T
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVVPMFESLGFTSLLNKLGVT 302


>gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 891

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  K+ 
Sbjct: 399 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 176/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      ++   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVVPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842]
 gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842]
          Length = 877

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  K+ 
Sbjct: 385 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 176/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEKLEANKDQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      ++   ++L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVVPMFESLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13]
          Length = 877

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 202/499 (40%), Positives = 313/499 (62%), Gaps = 16/499 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-KSRKSSIPIDKIS 534
           GI + G + D ++ SY+++   +S D+A IA+K   Y   T + +  K  K ++P     
Sbjct: 385 GIELNGIDFDFIIASYIVNPSETSTDLAEIARKKGYYQIETDEAVYGKGAKRAVP----D 440

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +V +H +  +  + ++      +L   + L ++E L+ P+  V+ +ME  GI++D+  
Sbjct: 441 QQKVADHLVRKTFAMQEMKESFIHELKDNEQLELFEELEMPLTLVLGEMEALGIKVDKAR 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+++  ++ + L  +EE I+DL+GEKFN++SPKQLG ILF KL  P   KTKTG + T+A
Sbjct: 501 LEEMGTDLGEKLEKIEEKIFDLAGEKFNINSPKQLGVILFEKLGLPPVKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    + +I+ IL +RQL K+KSTY + L   I++ + ++HT ++ A T TGRL+
Sbjct: 560 DVLEKL-AEKHEVIQQILHYRQLGKLKSTYIEGLLKVIHEDSNKIHTRFNQALTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFEN 773
           S++PNLQNIP++ + G+KIR AFI      +I +ADYSQIELR+LAHIA    L + F+ 
Sbjct: 619 SIDPNLQNIPVRLEEGRKIREAFIPSHEDWVIFAADYSQIELRVLAHIANDEKLIEAFKE 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A ++F V+ ++V+  MRR AK +NF I+YGIS + L+  L I R +A  +I 
Sbjct: 679 DADIHTKTAMDVFHVSEDEVTSNMRRQAKAVNFGIVYGISDYGLSQSLGITRKDAKTFID 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RY   FPG+ EY+E +    +  GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 RYLESFPGVKEYMEDSVLDAKDKGYVTTLLHRRRYLPEITSSNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE+  + +K+LLQ+HDELVFE P++EI    +I+   ME+A  
Sbjct: 799 GSAADIIKKAMIDMANRLEEENMKSKVLLQVHDELVFEAPKDEIEKLKKIVPEVMEQA-- 856

Query: 954 PKINLRVPLKVNIKVSNNW 972
             + L+VPLKV+    + W
Sbjct: 857 --VELKVPLKVDYSYGSTW 873



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 175/307 (57%), Gaps = 11/307 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  YRAF+A PLLS +  G+  NAI GF  ML ++L+  +     +H  V 
Sbjct: 4   NKLVLIDGNSIAYRAFFALPLLSNEK-GIHTNAIYGFTMMLMRILEEEK----PTHMLVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ + +YK  R K P  L  Q   +R    A+ I   E+  +EADDII T 
Sbjct: 59  FDAGKTTFRHKTFGEYKGGRQKTPPELSEQFSFLRELLDAYNIKRYELPEYEADDIIGTL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
              A K+ + V IIS DKDL QL +    + D  K+   D++      + +K+G+  +++
Sbjct: 119 AQQAAKDDYEVKIISGDKDLTQLATDKITV-DITKKGITDVDSYTPAFIEEKYGLNVDQI 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GDS DNIPG+PG+G KTA  LL+E+GN+E +L +  ++  KK +E + +  E 
Sbjct: 178 IDMKGLMGDSSDNIPGVPGVGEKTAIKLLKEFGNIETLLESIDQVSGKKLKEKLEDNKEQ 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S++L  + T+ P+ + +E L+ E  +  +++   K L F  L++++    +    ++
Sbjct: 238 AIMSKQLATIMTEAPVEVTVEELLYEGFDKKKVVDIFKELSFNSLLDKLGEDGETVTEDL 297

Query: 300 EPVVLDI 306
           E +  +I
Sbjct: 298 EDISFEI 304


>gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134]
 gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134]
          Length = 877

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  ++ 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
 gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
          Length = 871

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 199/525 (37%), Positives = 318/525 (60%), Gaps = 26/525 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508
           L+ L+ F E++   K+ H+ K     L++Y I ++GF+ D  + +Y++DS ++++++  +
Sbjct: 367 LNLLRTFMEDKTVKKVIHDSKNLITFLNKYDIDIQGFDFDTAIAAYLIDSSKANYEVFDL 426

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
             ++L    K      K+                   S+ + +L+  L+ +L  E +  +
Sbjct: 427 INRFLEKDIKSDCDDLKAIC-----------------SSYLTKLYEKLKERLHKEDMDEL 469

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y +++ P+I V+S ME  G +I++D L+++  +  + +   E+ IY+L+ E+FN+SSPKQ
Sbjct: 470 YYKVEHPLIYVLSSMESIGFKINKDKLEELRIKFKEQIEKTEKEIYELADEEFNVSSPKQ 529

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG ILF KL  P   KTKTG + T  + LE++    +PII  ++ +RQ++KI STY + L
Sbjct: 530 LGKILFEKLDLPVIKKTKTG-YSTNQEVLEKL-IDKHPIITKVMYYRQITKINSTYVEGL 587

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747
            N I+     +H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI   +   LIS
Sbjct: 588 KNVID-IDGCIHSNFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILIS 646

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            DYSQIELR+LAH+A    +   FE+  DIH   A+E+F V +++V+  MR +AK +NF 
Sbjct: 647 CDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFG 706

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I+YGIS F LA  L+I + EAA+Y+  YF R+P I EY+     + ++ GYV TI  RR 
Sbjct: 707 IVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRR 766

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
              EI S    ++ + ER A+NAPIQGSAADI + AM++V+  L +  L ++++LQ+HDE
Sbjct: 767 FIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELILQVHDE 826

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L+  V ++E     Q+++  MEKA    I L V L V++K    W
Sbjct: 827 LILNVKKDEFDIVKQLVIEEMEKA----IKLNVALDVDLKYGYTW 867



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/257 (39%), Positives = 148/257 (57%), Gaps = 9/257 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D +S + RAFYA P L+   DG+  NAI GF NML+K+    + E    +    FD
Sbjct: 4   LLILDSNSLMNRAFYALPPLTN-DDGVNTNAIYGFTNMLFKM----KDEINPDNIIATFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR++ Y +YKA R K+P  L  Q P+++   +  GI   EI GFEADDII T + 
Sbjct: 59  KKSPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCL 182
             E+    V I++ DKD +QL S  T +  T   V E  I D +  + ++ I P + + +
Sbjct: 119 FGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEFEITPTQFIDV 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+PG+G KTA  L++EYG LE++L +   I  KK +EN+    E A  
Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAFKLIKEYGTLEDVLKHIPEISGKKLKENLENNMEQAIF 238

Query: 243 SRKLVMLRTDVPITIPL 259
           S+KL  +  +VP+ I L
Sbjct: 239 SKKLATIMREVPLDINL 255


>gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676]
 gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676]
          Length = 891

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
 gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
          Length = 908

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 201/534 (37%), Positives = 317/534 (59%), Gaps = 21/534 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIA 509
           +  ++  E+    K GH++K   LVL   GI++ G  +D+ L+SY+L+  R  H +  ++
Sbjct: 384 AAFREVLEDAAVKKGGHDLKALSLVLANDGITLHGAHDDVELLSYLLNPSRREHALVDLS 443

Query: 510 QKWLSY------TRKEILKSRKSSIPIDKISDSQVQEHAIENS---NVILQLWLLLRPKL 560
           ++ L+          E  + +K     D   +      AI       +  +LW     +L
Sbjct: 444 RERLNTELPPLPPAAEGKRGKKDRALADHTVEEVATGFAIRAEAARRLAPELWK----EL 499

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
              KL  +   ++ P++ +++QME  G+ +D   L + S ++   + +  + +Y  +G +
Sbjct: 500 EAAKLAALARDMELPLLPLLAQMERRGVLLDTAELSRTSVKVDAAVEAQVKEVYRHAGRE 559

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN+ S  QL ++LFT+LK P   + KTG   +  Q++ +    ++P+   I+E+R LSK+
Sbjct: 560 FNIGSNPQLVEVLFTELKLPIIKRGKTG--PSADQEVLEKLSEEHPLPGAIIEYRSLSKL 617

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           KSTY D+LP  +     R+HT Y  A+T TGRL+S +PNLQNIP++TDLG++IRRAF++ 
Sbjct: 618 KSTYLDTLPTLVAA-DGRIHTTYHQAATATGRLSSTDPNLQNIPVRTDLGREIRRAFVAA 676

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
              +L+SADYSQ+ELR+LAHIA    L + F +  DIH   AAE+FGV  E+V  + RR 
Sbjct: 677 EGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHTRTAAEVFGVAKEQVDREQRRV 736

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +NF I YG+SP  L  +L I +  A D I+RYF R+ GI  Y+E+T +  R+ GYVE
Sbjct: 737 AKMVNFGIAYGLSPHGLGARLGIAQDVARDIIERYFTRYAGIRRYLEETVDRARKTGYVE 796

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T++GRR +  ++NS    +    ERAAIN PIQG+AAD+ ++AM++V ++L   KL T+M
Sbjct: 797 TLYGRRRYMADLNSKNRGVAQAAERAAINMPIQGTAADLIKKAMLAVDEALTAQKLRTRM 856

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQ+HDEL+FE P+ E+     + V +M        +L+VPLKV +    +W +
Sbjct: 857 LLQVHDELLFEAPDAEVEQVKALAVKAMSSVA----DLKVPLKVEVGAGRSWAD 906



 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/280 (37%), Positives = 160/280 (57%), Gaps = 5/280 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D S FI+RA++A P L+    G+  NA+ GF  M+ K L    +E   +H A+ FD
Sbjct: 13  LVLIDASGFIFRAYHAIPPLTTSK-GVQTNAVLGFTRMVLKAL----RELKPTHVALAFD 67

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + T R +I P YKANR   PE L+PQ  L+R   +A  +P +E+ G+EADD+I T   
Sbjct: 68  KESRTERQKIDPTYKANREGPPEDLVPQFALIRRVVEAINVPVLEVAGWEADDVIGTLAV 127

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A++EGF V +++ DKD +Q+V     LYD +K+       V  + GI P +M    AL 
Sbjct: 128 KAKQEGFCVQVVTGDKDFVQIVDDDVRLYDPMKDVHTLPADVKARLGIEPGQMRDYLALI 187

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+P +PGIG KTA  L+Q++G++E +L     +K+ K RENI  + E+   ++ L
Sbjct: 188 GDAVDNVPKVPGIGPKTATELIQQFGDVETLLSRLDEVKKPKIRENIASHRESLLRAKVL 247

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           V  +TD+ + + +  L     +  R       LEF  L+ 
Sbjct: 248 VTFKTDLSLDVRMADLARRPVDAQRSRELFTELEFFALLK 287


>gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W]
 gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W]
          Length = 891

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  ++ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
 gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
          Length = 887

 Score =  360 bits (924), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 321/527 (60%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR GI   G + D++L SY++++  +S+D+  IA  
Sbjct: 367 IKHILEDEKIKKNVFDLKRSMVGAHRLGIHTHGLDYDMLLASYLVNNENNSNDLGEIAHL 426

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +   IP D   D ++  H     N I  L   L  KL   +   
Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDA 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++ME+ G++++   L Q+  E +  L  LE+ IY  +GEKFNL+SPK
Sbjct: 484 LFDTIEIPTARVLARMEMNGMKVETSTLIQLQNEFAVKLKKLEDKIYGQAGEKFNLNSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T+ + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 544 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSKILDYRQIAKIQSTYVKG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF + + ++V+P MRRHAK +N
Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 720

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I +Y+ K     R  GY ETI  R
Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHR 780

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R   ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 781 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVH 840

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 181/331 (54%), Gaps = 21/331 (6%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H  V
Sbjct: 6   LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDII T
Sbjct: 62  AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179
           +    EK GF  TI++ D+DL QL S  T +  T     + E    EH+ +  G+ P + 
Sbjct: 122 FAAKGEKVGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPSEF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++   + 
Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKDK 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298
           A L++KL  +  D P+TI ++ +  E  +  +L  F + + F K +  + A+    D A 
Sbjct: 242 AFLAKKLATIDRDSPVTIDIDDVKREPVDYEKLRQFYEKMNFRKFLAELNASGAGQDGAE 301

Query: 299 IEPV---------VLDINTTENKGIAIETEI 320
           +E V         V D+  TE   +    E+
Sbjct: 302 VEKVEYTVLNDDNVKDVKATEKDTVEFYLEM 332


>gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 877

 Score =  360 bits (924), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 201/528 (38%), Positives = 316/528 (59%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K +  N    K   + K   + L   GI M+G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 358 FKAWLANGEMRKHTFDAKRAIVALKWNGIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKM 417

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 418 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFVEELKKNEQYE 473

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D + L+ +  E+   L  +E+ IY L+G +FN++SPK
Sbjct: 474 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEIYKLAGTEFNINSPK 533

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 534 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 591

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 592 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 649

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 650 MYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAV 709

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY+E      +Q GYV T+  
Sbjct: 710 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLN 769

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQG+AADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 770 RRRYIPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIIMADRLEEEGLQARLLLQV 829

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    Q++   ME A    I L VPLKV+      W
Sbjct: 830 HDELIFEAPKEEIEKLEQLVPEVMEHA----IELAVPLKVDYSYGPTW 873



 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501]
          Length = 881

 Score =  360 bits (924), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 330/581 (56%), Gaps = 40/581 (6%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN+ F       
Sbjct: 311 FKEEMFTTDMALYV--EMMGNNYHTEEIVGVAWGTEKKIYVTNDLSVFENQAFHSWITDP 368

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 429 DETVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L   I + 
Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIE
Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVP
Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+E+ +  +++   ME+A    ++L VPL  +      W E
Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879



 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 162/293 (55%), Gaps = 12/293 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M   ++Q  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +K  F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ 
Sbjct: 119 IGTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLI 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A LS+KL  + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 239 DKEQAFLSKKLATINTSAPVEVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291


>gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 650

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 320/527 (60%), Gaps = 17/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR GI   G + D++L SY++++  +S+D+  IA  
Sbjct: 130 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 189

Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K  L    K +   IP D   D ++  H     N I  L   L  KL   +   
Sbjct: 190 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDA 246

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++ME+ G++++   L Q+  E +  L  LE+ IY  +GEKFNL+SPK
Sbjct: 247 LFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAGEKFNLNSPK 306

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T  + L+Q+    +PI+  IL++RQ++KI+STY   
Sbjct: 307 QLGHILFEKLGLPVIKKTKTG-YSTAVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 364

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L + I +   RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P   + 
Sbjct: 365 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 423

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF + + ++V+P MRRHAK +N
Sbjct: 424 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 483

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I +Y+ K     R  GY ETI  R
Sbjct: 484 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIEDYMNKAVQEARDKGYAETIMHR 543

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R   ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 544 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVH 603

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW
Sbjct: 604 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 646


>gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
 gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
          Length = 881

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 329/581 (56%), Gaps = 40/581 (6%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN  F       
Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELP 485

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L   I + 
Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIE
Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVP
Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+E+ +  +++   ME+A    ++L VPL  +      W E
Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 162/293 (55%), Gaps = 12/293 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M   ++Q  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y +YK  R K P     Q+  +R      G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMTYIRDLLTGLGVQYYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ 
Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A LS+KL  + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291


>gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
          Length = 881

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 330/581 (56%), Gaps = 40/581 (6%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN+ F       
Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENQAFHSWITDP 368

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 369 NRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 429 DETVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L   I + 
Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIE
Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVP
Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+E+ +  +++   ME+A    ++L VPL  +      W E
Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 162/293 (55%), Gaps = 12/293 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M   ++Q  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +K  F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ 
Sbjct: 119 IGTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLI 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A LS+KL  + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 239 DKEQAFLSKKLATINTSAPVEVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291


>gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
 gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
          Length = 858

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 202/507 (39%), Positives = 306/507 (60%), Gaps = 25/507 (4%)

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKEILKSRKSSIPIDK 532
           +L RYG     F +D+ +  ++L+S  +  D +       L  +  ++ K  K   P   
Sbjct: 368 LLDRYGFKWNTFNDDLHIAGFLLNSTATDSDAVLEALHITLPESFHDVSKKTKEE-PAFS 426

Query: 533 ISDSQVQEHAI-----ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           ++  Q   H++     E    ILQ        L  E +L +Y  ++ P+  V+  ME  G
Sbjct: 427 LNREQALCHSLTQQLYEKKGEILQ-------SLKEENVLSLYREIEMPLTRVLFSMEQEG 479

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I I +  L +  A +++ L +L + IY  +G  FN++SPKQL ++LF +L   SG K ++
Sbjct: 480 ISIQESFLDEYGALLNEKLETLAQQIYSHAGMIFNINSPKQLANVLFDELNLSSGGKKRS 539

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               T+A  LE++  G +PI+ +ILE+R++SK+ STY D L  HI +  Q++HT ++   
Sbjct: 540 ----TSADVLEKLR-GKHPIVDDILEYRKISKVSSTYIDGLKKHI-RSDQKIHTSFNQTM 593

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S EPNLQNI I+ +LG++IR+AF++     L+SADYSQIELR+LAH+A    +
Sbjct: 594 TQTGRLSSSEPNLQNISIRDELGKEIRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHM 653

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F   LDIH   A  IF  + E+V    RR AKT+NF I+YG + F L++QL I R E
Sbjct: 654 IKAFNEGLDIHTKTATLIFNCSPEEVDEHKRRIAKTVNFGIVYGQTEFGLSSQLNITRKE 713

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A +++K YF  +P IHEY+ +  +F ++NGYVET+F RR    EIN      R   +RAA
Sbjct: 714 AGEFMKMYFESYPKIHEYMNQLIDFCKENGYVETLFHRRREIPEINDKNFMTREFGKRAA 773

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAAD+ + AM+ + ++L+D  + +KMLLQIHDEL+F VP+EE+    +++  +
Sbjct: 774 MNAPIQGSAADLIKIAMLKMDQALKDANVNSKMLLQIHDELIFLVPDEELDLMQKLVKET 833

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME A    + L+VPLK +I V  +W E
Sbjct: 834 MESA----MELKVPLKASISVGKSWYE 856



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 22/292 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L L+DG+S ++RA+YAT    R    +G+P NA+ GF  ML K +     + I     V 
Sbjct: 4   LLLLDGNSMLFRAYYATLYTHRMTTSNGIPTNAVYGFVMMLNKAIDIIEPDKIL----VA 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    TFR++ +  YK  R  + E L+ Q P+VR    A GI   E +G+EADDII + 
Sbjct: 60  WDAGKPTFRHKQFAAYKGTRKPLDEELIVQFPIVREYLDAAGIKRYEQEGYEADDIIGSM 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
                      TI+++D+DL+QL+ P+T +    K     E +D +++   +GI P +++
Sbjct: 120 AKCCND--IQTTILTSDRDLLQLIDPSTHVLLMKKGLSEMELMDEQNLFDTYGITPSQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+ G+G KTA  LL +Y  +EN+  +   +K K + +   +  + A
Sbjct: 178 DMKGLMGDTADNIPGVQGVGEKTALRLLNQYSTVENVYAHIDEVKGKLKEKLEKD-KDNA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHL----ILEDCNGPRLISFLKALEFTKLINRV 288
            +S +L  + T + +   L       I ED NG     F +  E   L+NR 
Sbjct: 237 FMSLELATIYTKMELPFSLNDCEFTGIQEDVNG-----FYEKYEMRSLVNRT 283


>gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 891

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  ++ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVRVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039]
          Length = 881

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 329/581 (56%), Gaps = 40/581 (6%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN  F       
Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L   I + 
Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIE
Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLPDIN 782

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVP
Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKEAGLQATMLLQVHDELVFEVP 842

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+E+ +  +++   ME+A    ++L VPL  +      W E
Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 12/293 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M   ++Q  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ 
Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A LS+KL  + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291


>gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15]
 gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15]
          Length = 881

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 330/581 (56%), Gaps = 40/581 (6%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN+ F       
Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENQAFHSWITDP 368

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 429 DETVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L   I + 
Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIE
Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVP
Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+E+ +  +++   ME+A    ++L VPL  +      W E
Sbjct: 843 EKELESLDKLVKKVMEQA----VSLHVPLITDSSWGKTWYE 879



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 162/293 (55%), Gaps = 12/293 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M   ++Q  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +K  F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ 
Sbjct: 119 IGTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLI 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A LS+KL  + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 239 DKEQAFLSKKLATINTSAPVEVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291


>gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68]
 gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68]
 gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
          Length = 881

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 329/581 (56%), Gaps = 40/581 (6%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN  F       
Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELP 485

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L   I + 
Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIE
Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVP
Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+E+ +  +++   ME+A    ++L VPL  +      W E
Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 12/293 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M   ++Q  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ 
Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A LS+KL  + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291


>gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803]
 gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803]
          Length = 891

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 200/528 (37%), Positives = 318/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K++  N    K   + K   + L   GI ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 372 FKEWLANGEMRKHTFDAKRAIVALKWNGIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 431

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFIEELEKNEQYE 487

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D D L+ +  E++  L  +E+ IY L+G +FN++SPK
Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 547

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEG 605

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 606 LLKVVHEDSCKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F+N +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 664 MYAADYSQIELRVLAHIANDKGLVEAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAV 723

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY++      +Q GYV T+  
Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLN 783

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQG+AADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIIMADRLEEEGLQARLLLQV 843

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 844 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 887



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E+  +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELANYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTTEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185]
 gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 891

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  ++ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
 gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
          Length = 834

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 272/411 (66%), Gaps = 8/411 (1%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           EKLL +Y  ++KP+  V++ ME TG+++D   L+ +S E+++ +  LEE ++ L+G  FN
Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485

Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           L+S  QL  +LF +L+ P+  KT KTG+  T+A  LE +    +PI++ IL+ R+L+K+K
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           +TY D LP+ ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAF++  
Sbjct: 545 NTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR A
Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT+NF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYVET
Sbjct: 665 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGRR +  ++N+   S+R   ER A N P+QG+AAD+ + AM+ +   L +  +  +ML
Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARML 782

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+ E P+      + +   +MEKA      L VPL+V + +  +W
Sbjct: 783 LQVHDELLLEAPQARAEEVAALAKEAMEKAY----PLAVPLEVEVGIGEDW 829



 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 111/286 (38%), Positives = 161/286 (56%), Gaps = 8/286 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+    +S+   
Sbjct: 8   FESKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKSVF-- 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD+
Sbjct: 65  --VVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    AEKEG+ V I++ D+DL QLVS    +    +   I  E + +K+G+ PE+ V
Sbjct: 123 LATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHP-EGHLITPEWLWEKYGLRPEQWV 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DN+PG+ GIG KTA  LL+E+G+LE++L N  R+K +  RE I  + E  
Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLESLLKNLDRVKPENVREKIKAHLEDL 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           RLS +L  +R D+P+ + L      D  G R  +FL+ LEF  L++
Sbjct: 242 RLSLELSRVRADLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285


>gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 897

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/511 (38%), Positives = 294/511 (57%), Gaps = 9/511 (1%)

Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKS 523
           H++K     L R G++  G  ED  LMS +L   R  H +  +A++  S    R     +
Sbjct: 391 HDLKSAAHALARLGLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRSPADGA 450

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           ++ +  ++ +   +V   A   +  +  L   L   L  E+L  +Y  +++P++ V+ +M
Sbjct: 451 KRGAPGLEGLEVERVAAWAGACAAALPDLAAKLAEALETERLGALYREVERPLVPVLVEM 510

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  GI +D+  ++ +SAE  K +  LE  I+  +G  FN++S ++L  +LF +L+ P   
Sbjct: 511 ERAGILVDRGAMEGMSAEFGKAMQDLEARIHAAAGHPFNVASTRELAQVLFVELELPVVK 570

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           + KTG   +T QD+ +     + + + +LE R LSK+K TY D+LP  ++    R+HT +
Sbjct: 571 RLKTG--PSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTF 628

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
             A   TGRL+S +PNLQNIP++T+L ++IR+AF++P   +L+SADYSQIELRILAH + 
Sbjct: 629 HQAGAATGRLSSSDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSD 688

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L Q F +  D+H   AAE FGV  E+V+P  RR AK +NF I YG+S F L+ +L +
Sbjct: 689 DPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDL 748

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           P SEA   I RYF R+ G+  YIE      R  G   T+FGR     EI +   ++RN  
Sbjct: 749 PPSEAQGIIDRYFTRYAGVRRYIEWAVEEARAKGESRTLFGRARAMPEIAARNPALRNAA 808

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN PIQG+AAD+ + AMI VH +L   +   ++LLQ+HDELV EVPE E+     +
Sbjct: 809 ERTAINTPIQGTAADVVKIAMIRVHAALAQERREARLLLQVHDELVLEVPERELEPVEAL 868

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A      L+VPL+V +     W E
Sbjct: 869 VRREMEGAA----RLKVPLEVQVGHGQTWAE 895



 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 116/291 (39%), Positives = 166/291 (57%), Gaps = 16/291 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGS FI+RA++A P LS    G+P NA+ GF NML K L    +E   +H A++FD
Sbjct: 4   LTLIDGSGFIFRAYHAIPHLS-TTKGIPTNAVYGFTNMLLKAL----REHAPTHVALVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FR++I P+YKANRP+ P+ L  Q PLVR   +A  +P IE  G+EADDIIAT   
Sbjct: 59  AGRRSFRHDIDPEYKANRPEAPDDLAAQFPLVRDVARALNVPVIEEAGYEADDIIATLAS 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVC 181
            A  EG+ V +++ DKD  QLV     LYD + E            V KK G+ PE+++ 
Sbjct: 119 HARAEGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQVIE 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILE 235
            Q++ GD IDN+PGIPG+G  TAA L++ +G  E +L   + I        +K R+ ++ 
Sbjct: 179 YQSILGDKIDNVPGIPGVGEVTAAALVRHFGTTEAMLARPAEIPAAVSRGGEKLRDKVVA 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            AE  R +R+LV LR D+ +    E       +  R  +    LEF++L+ 
Sbjct: 239 NAERIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVK 289


>gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317]
          Length = 881

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 329/581 (56%), Gaps = 40/581 (6%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN  F       
Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L   I + 
Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIE
Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVP
Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+E+ +  +++   ME+A    ++L VPL  +      W E
Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 12/293 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M   ++Q  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ 
Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A LS+KL  + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291


>gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5]
 gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5]
          Length = 881

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 217/603 (35%), Positives = 342/603 (56%), Gaps = 44/603 (7%)

Query: 395 ITDTMDAF----HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS----------- 439
           I DT +AF    H    A A+  +D +  +   VE   + +S+   + +           
Sbjct: 298 IADTAEAFAELLHEAATA-AVIAIDTETTSEHAVEADLVGISIAIGEQAWYVPIDHAHTD 356

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM---RGFEDIMLMSYVL 496
           T +N  T ++   +    +    L +G NIKYD +VL R+ +++   R F D M+ SY+L
Sbjct: 357 THRNMPTADVQKLITAL-DRSDLLLVGQNIKYDLIVLQRHDMALPQPRLF-DTMIASYLL 414

Query: 497 DSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
           D+ R SH +  +A ++LS+     K+++    +   +D  + ++   +A E++ + L L+
Sbjct: 415 DANRRSHGLDQLAVEFLSHEMIAFKDVVPKGSTFRDVDIPTAAR---YAGEDAAITLALY 471

Query: 554 LLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            L  P+  +E+  H ++  ++ P++ V+  ME+ GI +D+++L  +    ++ L  LEE 
Sbjct: 472 NLFAPR--IEQEYHELFHAIEMPLVRVLCHMEMLGIAVDREMLGNLHESFTRRLHELEEK 529

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
           IY+L+GE FN++SPKQL  +LF K+  P   KTKTG + T    LE +       I N+L
Sbjct: 530 IYELAGEAFNINSPKQLATLLFEKMGIPPVKKTKTG-YSTDVSVLEAL--APQYEIANVL 586

Query: 673 -EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
            ++R +SK+ STY ++L   IN  T R+HT ++     TGRL+S +PNLQNIPI+T+ G+
Sbjct: 587 TQYRMVSKLLSTYVNALSELINPWTGRIHTSFNQTVANTGRLSSSDPNLQNIPIRTEEGR 646

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           ++R+AF+  P    ++ADYSQIELRI AH++    + + F    DIH   A  IFG +  
Sbjct: 647 EVRKAFVPAPGFCFVAADYSQIELRIAAHLSGDESMLKSFAEEKDIHAQTADAIFGSS-- 704

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
              P  RR AK +NF I+YGIS F+L+  L +   E    I  YF R+PG+  YI+    
Sbjct: 705 --EPNYRRMAKAVNFGILYGISAFKLSRDLGMTPKEGQALIDSYFLRYPGVKAYIDHQIA 762

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
           F R++GY +T++GRR +  +INS   +IR   ER A+N PIQG++ADI + AM  +H+ L
Sbjct: 763 FAREHGYAQTLYGRRRYLPDINSRNRNIREAAERNAVNMPIQGTSADIIKIAMNRIHQQL 822

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
             ++   +MLLQIHDEL+FEVP E+    S  +   ME A      L+V L V +   NN
Sbjct: 823 APYQ--ARMLLQIHDELLFEVPFEQAEPFSAFLQEQMESAA----QLKVRLTVTVSSGNN 876

Query: 972 WQE 974
           W +
Sbjct: 877 WND 879



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/251 (44%), Positives = 152/251 (60%), Gaps = 8/251 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDG+SFIY+AFYA   LS +  GLP NAI GF N+L K       + I     V+FD
Sbjct: 3   LLLVDGNSFIYKAFYAIRGLSNRA-GLPTNAIYGFRNILEKCHNAIEPDGIV----VVFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+E YP YKA R K PE L+ Q+P +    +A G+  + I+GFEADD+I T T 
Sbjct: 58  APGPTFRHESYPQYKAQRQKAPEDLISQIPWIHRLVEAQGLKRLCIEGFEADDVIGTITC 117

Query: 127 IAEKEGF-AVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            A+  G+  V I ++DKDL QL++ P   LYDT KE  +D      K G+ P +++   A
Sbjct: 118 QAQDAGYREVYIATSDKDLGQLLTKPGVFLYDTSKERILDAAAFHDKMGVTPAQVIDYLA 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPG+ GIG K+A  LL++YG L+NI  +   I     +  + E+ + A LSR
Sbjct: 178 LVGDASDNIPGVKGIGPKSAQKLLEQYGTLDNIYAHVDEISGAVGKR-LQEFRDDAFLSR 236

Query: 245 KLVMLRTDVPI 255
           +L+ L T VP+
Sbjct: 237 RLLELHTSVPL 247


>gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 891

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/528 (38%), Positives = 316/528 (59%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K +  N    K   + K   + L   GI M+G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 372 FKAWLANGEMRKHTFDAKRAIVALKWNGIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKM 431

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFVEELKKNEQYE 487

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D + L+ +  E+   L  +E+ IY L+G +FN++SPK
Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEIYKLAGTEFNINSPK 547

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 605

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 606 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 664 MYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAV 723

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY+E      +Q GYV T+  
Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLN 783

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQG+AADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIIMADRLEEEGLQARLLLQV 843

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    Q++   ME A    I L VPLKV+      W
Sbjct: 844 HDELIFEAPKEEIEKLEQLVPEVMEHA----IELAVPLKVDYSYGPTW 887



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/496 (39%), Positives = 300/496 (60%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 362 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 401

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 402 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 459 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 518

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL   
Sbjct: 519 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLCCC 577

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRR FI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 578 DPNLQNIPVRTPLGQRIRRGFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 637

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF
Sbjct: 638 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 697

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 698 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 757

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 758 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 812

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 813 -LAVPLEVEVGIGEDW 827



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 30/296 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      I   
Sbjct: 8   FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD+
Sbjct: 64  --VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170
           +A+    AEKEG+ V I++ DKDL QL+S           ++I + H          + +
Sbjct: 122 LASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 170

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K+G+ P++    +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    R
Sbjct: 171 KYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-R 229

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           E IL + +  +LS  L  +RTD+P+ +        D    RL +FL+ LEF  L++
Sbjct: 230 EKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 283


>gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 891

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/501 (39%), Positives = 308/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  K+ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LCNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E + E  E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO]
 gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO]
          Length = 868

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 329/581 (56%), Gaps = 40/581 (6%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN  F       
Sbjct: 298 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 355

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 356 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 415

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 416 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELP 472

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 473 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 532

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L   I + 
Sbjct: 533 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 589

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIE
Sbjct: 590 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 649

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 650 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 709

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 710 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 769

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVP
Sbjct: 770 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 829

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+E+ +  +++   ME+A    ++L VPL  +      W E
Sbjct: 830 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 866



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 155/282 (54%), Gaps = 16/282 (5%)

Query: 17  YRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVT 71
           +RAF+  PL +     +  +GL  NAI  F  M   ++Q  +     +H  V FD    T
Sbjct: 3   FRAFF--PLHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTHVLVAFDAGKTT 56

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           FR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDII T     +K+
Sbjct: 57  FRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDIIGTLAEKVDKD 116

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKMVCLQALT 186
            F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ P++++ ++ L 
Sbjct: 117 QFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLTPKQIIDMKGLA 176

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++   E A LS+KL
Sbjct: 177 GDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLINDKEQAFLSKKL 236

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 237 ATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 278


>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 878

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/528 (37%), Positives = 322/528 (60%), Gaps = 27/528 (5%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514
           F  +E   K   ++K  ++ L   G  +RG   D++L +Y+++    S++   +A   +S
Sbjct: 363 FLADEKIAKDIFDLKRSRVALMWQGFDLRGVAFDLLLATYIINPTNVSNEFKKVA---MS 419

Query: 515 YTRKEIL-------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           Y   ++L       K  K +I      +SQ+  H+I+ +  +L+L      +L  +  L 
Sbjct: 420 YDYDDVLYDEEVYGKGAKRAIA----EESQIARHSIDIATAVLKLKETALEQLKEQDQLT 475

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE ++ P+ DV+++ME  G+ +D   L ++  ++   + +LE  IY+ +G  FN++SPK
Sbjct: 476 LYEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHAGMSFNINSPK 535

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG++LF KL  P   KTKTG + T A  LE+++   +PIIK+I+E+R L+K+ STY + 
Sbjct: 536 QLGEVLFDKLSLPVIKKTKTG-YSTNADVLEKLSDA-HPIIKSIMEYRTLTKLYSTYIEG 593

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L         +VHT ++ A T TGRL+S+EPNLQNIPI+ + G+ IR+AF+  P+++   
Sbjct: 594 LKKACYS-DGKVHTIFNQALTQTGRLSSIEPNLQNIPIRLEEGRLIRKAFV--PSEEGWV 650

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           ++ ADYSQIELRILAHI+    L + F+   DIH+  A ++F V+ E+++  +RR AK I
Sbjct: 651 ILGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAI 710

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYG+S F L+  L I + EA  YI  Y   + GI++Y+E T    + +GY  T+F 
Sbjct: 711 NFGIIYGMSAFGLSENLNITQKEAKKYIDHYLKTYSGINQYMEDTVKDAKFHGYATTLFN 770

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  E++    ++R   ER A+NAPIQG+AADI ++AMI V  ++++ ++ +++LLQ+
Sbjct: 771 RRRYIPELSQKNYALRQFGERTAMNAPIQGTAADIIKKAMIDVANAMKEKQVKSRLLLQV 830

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FEVP+EE+    +++  +ME      + L+VPLK +      W
Sbjct: 831 HDELIFEVPQEELDLMIELVTKTMEDV----VKLQVPLKADYSYGPTW 874



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 175/329 (53%), Gaps = 18/329 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N L L+DG+S +YRA+YAT     L +   G+  NA+ GF NM+ K++ +       +H 
Sbjct: 2   NTLVLIDGNSLMYRAYYATAYSGNLMKTSQGIFTNALYGFVNMMNKVMDDYHH----THM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E    YK  R  +P+ +  Q+ L++      G+  +E+  +EADDII
Sbjct: 58  LVAFDAGKTTFRHEFLETYKDGRKPMPDEMRSQINLIKKYLDLLGVKRLELPTYEADDII 117

Query: 122 ATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
            T   + EK  F  + II+ DKDL+Q+    T ++ T K     E    E V +K+ + P
Sbjct: 118 GTLARLGEKADFEKIHIITGDKDLLQMADEKTTVHITRKGVTDIESFTPEAVFEKYELSP 177

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++V L+ L GD  DN+PGIPG+G KTA  LL+EY  +EN++ N + +K  K +E +   
Sbjct: 178 SQIVDLKGLMGDPSDNLPGIPGVGEKTAIKLLKEYQTVENLVANTASLK-GKMKEKVEAN 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A L +++  + TDVP+++  + L+ +  +   LI   K +EF   + ++      D 
Sbjct: 237 VEQALLCKRMATIHTDVPLSVTFDDLLYQGPDVAGLIELFKEMEFNAFLKKMKLQEVKDE 296

Query: 297 ANIEPVVL-----DINTTENKGIAIETEI 320
               PV +     ++NT   K  AI  EI
Sbjct: 297 TPKAPVAIIGSLEELNTKIFKHSAIHVEI 325


>gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol]
 gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol]
          Length = 882

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521
           ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        
Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K  +P D   +     H       I  L   L  +L  +    ++ +++ P+  ++ 
Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P 
Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T    LEQ+     PI+ +IL +RQ++KI+STY + L   I +   ++HT
Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      LI S+DYSQIELR+LAH
Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+ 
Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 729

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++
Sbjct: 730 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+  
Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +Q++   ME A    ++L VPL  +      W E
Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880



 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG+S  +RAF+A    L R    +GL  NAI  F NM   ++Q    + + +H  V
Sbjct: 6   LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
                +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ G+ P++
Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E +  N   +K+ K +EN++   E
Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A LS++L  +  + P+ + +E L  E  N  +L+ F K ++F + + ++  T
Sbjct: 242 QAFLSKRLATIEVNAPVKVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294


>gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000]
          Length = 882

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521
           ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        
Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K  +P D   +     H       I  L   L  +L  +    ++ +++ P+  ++ 
Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P 
Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T    LEQ+     PI+ +IL +RQ++KI+STY + L   I +   ++HT
Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      LI S+DYSQIELR+LAH
Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+ 
Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 729

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++
Sbjct: 730 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+  
Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +Q++   ME A    ++L VPL  +      W E
Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880



 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG+S  +RAF+A    L R    +GL  NAI  F NM   ++Q    + + +H  V
Sbjct: 6   LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
                +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ G+ P++
Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E +  N   +K+ K +EN++   E
Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A LS++L  +  + P+ + +E L  E  N  +L+ F K ++F + + ++  T
Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294


>gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896]
          Length = 872

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/527 (37%), Positives = 321/527 (60%), Gaps = 11/527 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK+  E E+    G+N+K +   L  YGI++     D  L  Y+L+      +   I  K
Sbjct: 350 LKELLERENVFIYGNNLKREYTALKPYGITLPKISFDSQLAQYILNPSEVEQEPEKIGIK 409

Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +    +S   +++L   K  +     +  Q+ E+  +   +I      +   +  E    
Sbjct: 410 YGMPIVSPNLEDLLGKGKKRMSFSMANRVQMDEYFAKILAIISHCKTKMLDMIQEEDTKF 469

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++E+++ P++ V+ +ME  GI +++D+L ++  E +K ++  E+ IYDL+GE+FN++SPK
Sbjct: 470 LFEKIELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQYEQEIYDLAGEEFNINSPK 529

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF KL+ P   KTKTG + T A+ LE++    +PII  IL +RQ+SK++STY   
Sbjct: 530 QLGVVLFEKLQLPVIKKTKTG-YSTGAEILEKL-YDKHPIISKILSYRQVSKLQSTYVIG 587

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L + IN  ++R+H+ ++   T TGR++SLEPNLQNIP++T++G+++R+ F++     L+ 
Sbjct: 588 LLSLINPTSKRIHSTFNQTLTTTGRISSLEPNLQNIPVRTEMGRELRKVFVAKEGYVLVD 647

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAH+A+   + + F  S+DIH   A+E+F V +E+V+ ++R  AK +NF 
Sbjct: 648 ADYSQIELRVLAHMAQEKKMIEGFHGSMDIHTKTASEVFSVPVEEVTKELRSAAKAVNFG 707

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I+YGIS F L+  L I + +A +YI  YF R+PGI  Y++     V + GY  T+ GRR 
Sbjct: 708 IVYGISDFGLSNNLNITKKQAKEYIDLYFARYPGIKTYMDTIVKEVEELGYSTTLCGRRR 767

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  EI S    ++N+ +R A+N PIQGSAADI + AM  V + L+  K+  +++LQ+HDE
Sbjct: 768 YIPEIKSSNFIVKNMGKRLAMNTPIQGSAADIIKIAMNRVFEWLKTEKIDAELVLQVHDE 827

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+ EV E++       ++  ME A     ++ VPLKV+  + ++W E
Sbjct: 828 LLLEVREDDAKYVRDKVIELMEGAW----SMDVPLKVDATIGDSWYE 870



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/287 (36%), Positives = 162/287 (56%), Gaps = 10/287 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL+DG+S I RA+YA P L  K DGL  NAI GF  M +K +     E    + +V F
Sbjct: 3   RLFLIDGNSLINRAYYALPPLMTK-DGLYTNAIYGFLMMFYKAMD----EYAPDYVSVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++ Y DYK  R  +P  L  Q+  ++      G+   EI+GFEADDII T +
Sbjct: 58  DLKGPTFRHKEYKDYKGTRKGMPPELAMQIQPLKELLDTMGVHRAEIEGFEADDIIGTLS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            I E E   V I++ D+D +QL S TT +  T K     E  D + V +++ + P++ + 
Sbjct: 118 KIGEDENLEVFILTGDRDALQLASKTTKILFTKKGISDLEVYDEDKVKERYELTPKQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GDS DNIPG+ GIG KT   LL+EY ++EN++++   +K   + +    Y E+A 
Sbjct: 178 LKGLMGDSSDNIPGVAGIGEKTGIKLLKEYDSIENLILHIDELKGAVKTKMEAGY-ESAV 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +S++L  +   +P+   L+ L+ E  +G +L S      FT L++++
Sbjct: 237 MSKRLATIVRVIPVEFSLDELLYEKKSGEQLRSLFMKYGFTSLMSKL 283


>gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG]
 gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG]
 gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137]
 gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62]
 gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF]
          Length = 882

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521
           ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        
Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K  +P D   +     H       I  L   L  +L  +    ++ +++ P+  ++ 
Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P 
Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T    LEQ+     PI+ +IL +RQ++KI+STY + L   I +   ++HT
Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      LI S+DYSQIELR+LAH
Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+ 
Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 729

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++
Sbjct: 730 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+  
Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +Q++   ME A    ++L VPL  +      W E
Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880



 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG+S  +RAF+A    L R    +GL  NAI  F NM   ++Q    + + +H  V
Sbjct: 6   LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
                +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ G+ P++
Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E +  N   +K+ K +EN++   E
Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A LS++L  +  + P+ + +E L  E  N  +L+ F K ++F + + ++  T
Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294


>gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 893

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/526 (38%), Positives = 321/526 (61%), Gaps = 15/526 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   ENE  LK   N+K   ++  R G++++G   D +L++Y+LD+  + + ++++AQ+
Sbjct: 373 LKSVIENEQILKNVFNVKAQLVLFKRLGLALKGVNFDFILVAYLLDTVANDNVLSTLAQR 432

Query: 512 WLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           +  Y   +     K  K ++P D    + +  H    ++ + +L      +L   +  H+
Sbjct: 433 FDVYLAPDEDIYGKGAKFTVPTDT---NLLLSHVAHKADGLFKLEKPAFTELKQHEQTHL 489

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y  ++ P+  V++ ME  GI+++ + L+    ++S+ +  ++  IY  +GE+FNL+SPKQ
Sbjct: 490 YTDIELPLAFVLADMEYQGIKVNPEYLRNKGKDLSERIADIQSAIYIEAGEEFNLNSPKQ 549

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG +LF K+  P   KTKTG   +TA D+ +      PI+ +IL++RQL+K+KSTY D L
Sbjct: 550 LGVLLFEKMGLPVIKKTKTGY--STAVDVLEKLAPQAPIVDHILQYRQLAKLKSTYIDGL 607

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
            + I  +  ++HT +    T TGRL+S++PNLQNIP++++ G+ IR AF+ S P  ++  
Sbjct: 608 LSVIYPKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSEEGRLIRTAFVPSHPNWQIFG 667

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-SPQMRRHAKTINF 806
           ADYSQIELR+LAH+     + + F N  DIH   A  +FG+  + V  P  RR AK +NF
Sbjct: 668 ADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNF 727

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS + LA  L I R+EA  +I  YF  FP IHE++   K F  ++GYVETI  RR
Sbjct: 728 GIVYGISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHRR 787

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  +I +   ++R+  ER A+N+PIQGSAADI + AMI V+++L ++ L  +MLLQ+HD
Sbjct: 788 RYLPDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVNEALRENNLQARMLLQVHD 847

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FE P +EI   ++++ + M+ A    + L VPLKV+    + W
Sbjct: 848 ELIFETPVDEIDELTEVVTNVMDSA----VALDVPLKVDAHHGDTW 889



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 167/293 (56%), Gaps = 17/293 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG+S  +RAFYA    L R   H+GL  NA+  F N L K++     + +A   A+
Sbjct: 6   LLLVDGNSLAFRAFYAMYNQLDRMISHEGLHTNALVAFNNFLDKIV-----DPMAPDLAL 60

Query: 64  I-FDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           + +D  +   T R +++P+YK  R K+PE    Q P +R      G+   E  G EADDI
Sbjct: 61  VAWDAGSGKETHRGKLFPEYKDGRSKVPEEFKEQFPYLREMVMLHGLRNYEQAGLEADDI 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I TY+ + E  G++V I++ D+DL QL +    + +  K+   DIE     ++ +K+G+ 
Sbjct: 121 IGTYSRMGEAAGYSVIIVTGDQDLTQLATENVTV-NVTKKGVTDIESYTPAYIKEKFGLT 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++  +ALTGD+ DN PG+  +G KTA  LL EY N++N+  N  ++KQ K ++N++ 
Sbjct: 180 PAQIIDKKALTGDTSDNYPGVTKVGEKTALKLLAEYNNIDNLYDNIDKLKQSKMKDNLIN 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A  +R+L  + TD  + +PLE +     +  ++I F + L+F + + ++
Sbjct: 240 DRELAFQARELATILTDANLPLPLEEMEYRGVDFEKIIPFYENLDFKQHLAKI 292


>gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76]
 gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017]
 gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027]
 gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141]
 gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244]
 gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012]
 gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031]
 gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043]
 gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312]
 gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341]
 gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
 gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
 gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467]
          Length = 882

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521
           ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        
Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K  +P D   +     H       I  L   L  +L  +    ++ +++ P+  ++ 
Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P 
Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T    LEQ+     PI+ +IL +RQ++KI+STY + L   I +   ++HT
Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      LI S+DYSQIELR+LAH
Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+ 
Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 729

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++
Sbjct: 730 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+  
Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +Q++   ME A    ++L VPL  +      W E
Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880



 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG+S  +RAF+A    L R    +GL  NAI  F NM   ++Q    + + +H  V
Sbjct: 6   LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
                +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ G+ P++
Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E +  N   +K+ K +EN++   E
Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A LS++L  +  + P+ + +E L  E  N  +L+ F K ++F + + ++  T
Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294


>gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
 gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
          Length = 848

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521
           ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        
Sbjct: 342 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 401

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K  +P D   +     H       I  L   L  +L  +    ++ +++ P+  ++ 
Sbjct: 402 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 458

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P 
Sbjct: 459 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 518

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T    LEQ+     PI+ +IL +RQ++KI+STY + L   I +   ++HT
Sbjct: 519 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 575

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      LI S+DYSQIELR+LAH
Sbjct: 576 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 635

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+ 
Sbjct: 636 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 695

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++
Sbjct: 696 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 755

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+  
Sbjct: 756 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 815

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +Q++   ME A    ++L VPL  +      W E
Sbjct: 816 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 846



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 148/264 (56%), Gaps = 9/264 (3%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +  NAI  F NM   ++Q    + + +H  V FD    TFR E Y +YKA R K P    
Sbjct: 1   MHTNAIYAFNNMFENVMQ----KEMPTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFK 56

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+P +R   +  G+   E+  +EADDII T     +K+ F V ++S D+DL QL + T 
Sbjct: 57  EQMPYIRELLEGLGVKYYELPNYEADDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTV 116

Query: 153 CLYDTVKE----EKIDIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
            +  TVK     E    EH+ +K+ G+ P++++ ++ L GD+ DNIPG+  IG KTA  L
Sbjct: 117 KVDITVKGVSDIESYTPEHIAEKYDGLTPKQIIDMKGLAGDTSDNIPGVTKIGEKTAIKL 176

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           L++YG++E +  N   +K+ K +EN++   E A LS++L  +  + P+ + +E L  E  
Sbjct: 177 LKQYGSVEGVYENIDEMKKSKMKENLINDKEQAFLSKRLATIEVNAPVEVNVEDLAYEGK 236

Query: 268 NGPRLISFLKALEFTKLINRVATT 291
           N  +L+ F K ++F + + ++  T
Sbjct: 237 NLEKLVPFYKEMDFKQFLAKLDIT 260


>gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488]
 gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum]
 gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488]
          Length = 877

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKAYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames]
 gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bacillus anthracis str. A2012]
 gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W]
 gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684]
 gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248]
 gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066]
 gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055]
 gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B]
 gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94]
 gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames]
 gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W]
 gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684]
 gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248]
          Length = 877

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
           polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 272/411 (66%), Gaps = 8/411 (1%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           EKLL +Y  ++KP+  V++ ME TG+++D   L+ +S E+++ +  LEE ++ L+G  FN
Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485

Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           L+S  QL  +LF +L+ P+  KT KTG+  T+A  LE +    +PI++ IL+ R+L+K+K
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           +TY D LP+ ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAF++  
Sbjct: 545 NTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR A
Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT+NF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYVET
Sbjct: 665 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGRR +  ++N+   S+R   ER A N P+QG+AAD+ + AM+ +   L +  +  +ML
Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARML 782

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+ E P+      + +   +MEKA      L VPL+V + +  +W
Sbjct: 783 LQVHDELLLEAPQARAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDW 829



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/286 (39%), Positives = 162/286 (56%), Gaps = 8/286 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+    +++   
Sbjct: 8   FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKAVF-- 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD+
Sbjct: 65  --VVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    AEKEG+ V I++ D+DL QLVS    +    +   I  E + +K+G+ PE+ V
Sbjct: 123 LATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHP-EGHLITPEWLWEKYGLRPEQWV 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  
Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDL 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           RLS +L  +RTD+P+ + L      D  G R  +FL+ LEF  L++
Sbjct: 242 RLSLELSRVRTDLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285


>gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42]
 gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42]
          Length = 891

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
 gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
          Length = 884

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 206/502 (41%), Positives = 312/502 (62%), Gaps = 14/502 (2%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK--EILKSRKSSIPIDK 532
           L+R GI +   + D++L+SY+L++  +S+D+ ++A     Y  K  E +  + +   ID 
Sbjct: 388 LYRQGIELANVDFDMLLVSYLLNTTNNSNDVGTVAHLHGFYNVKTDEEVYGKGAKRHIDP 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            S + +  H +     I  L   +   L       +Y  ++  +  V++ MEI GI++D 
Sbjct: 448 QSPAFLA-HLVHKVKAIDALHDGMFKDLDAHNQSKLYWDIEIKIAFVLAHMEINGIKVDA 506

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L+ + ++  + L  +E+ I+  +GE+FN+ SPKQLG ILF KL+ P   KTKTG + T
Sbjct: 507 ATLEGMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGKILFEKLRLPILKKTKTG-YST 565

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   LE++   D PI++N+L++RQ+SK++STY D L   I+    +VHT Y    T TGR
Sbjct: 566 SVDVLEKL-APDAPIVQNVLDYRQISKLQSTYVDGLLKVIHPDDSKVHTRYLQTLTQTGR 624

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIP++++ G+ IR+AFI S P  ++ S+DYSQIELR+LA I     +   F
Sbjct: 625 LSSVDPNLQNIPVRSEEGRLIRQAFIPSHPGWQIFSSDYSQIELRVLASITDDQNMQDAF 684

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           +N  DIH   A  IFG+ + E+V+P++RR AK +NF I+YGIS F LA+   I R +A  
Sbjct: 685 KNGEDIHATTARRIFGLPSNEEVTPELRRQAKAVNFGIVYGISDFGLASNTGITRKQAHQ 744

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  +PG+ +Y E    F R + YVETI  RR +  +INS   ++R+  ER A+N 
Sbjct: 745 FIERYFEEYPGVKKYTEDIVEFARNHRYVETIAHRRRYLPDINSKSFNLRSFAERTAMNT 804

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI++  +++D K  T+MLLQ+HDEL+FEVP+EE+ T  Q+I   M+ 
Sbjct: 805 PIQGSAADIIKIAMINMADAIKDMK--TRMLLQVHDELIFEVPDEELDTVKQLIPSVMDS 862

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
           A    I+L VPLKV       W
Sbjct: 863 A----IHLNVPLKVESHWGKTW 880



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 154/291 (52%), Gaps = 12/291 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  ++AFYA      K     GL  +AI GF  ML K+L + +   +     V
Sbjct: 5   LLLIDGNSIAFKAFYALYTAMDKFTNPSGLHTSAIYGFNRMLDKVLADEKPTDVL----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR ++Y DYK  R K P  L  Q P ++    A GI   E+  +EADDII T
Sbjct: 61  AFDAGKTTFRTKMYADYKGGRAKTPTELSEQFPFLKELINARGISTYELPDYEADDIIGT 120

Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
               AE+ G + V I++ D+DL QL S  T +  + K     E    +HV +K G+ P +
Sbjct: 121 LAKKAEEAGDYQVVIVTGDRDLTQLTSDKTTVQVSKKGVTELETYTPKHVEEKLGVKPSQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DN PG+  +G KTA  L+Q++G ++N+  N  ++  KK +E+++    
Sbjct: 181 IIEIKGLKGDNSDNYPGVEKVGDKTAVKLVQQFGTIDNLYQNIDQVSGKKLKEHLIHDQA 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            A  +  L  +  D P+T+ L+ L  +  N  +L  F + + F   + +++
Sbjct: 241 QAERAHTLATINRDAPVTVSLDQLKYQGDNIDKLTDFYERMGFKSFLAKLS 291


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 272/411 (66%), Gaps = 8/411 (1%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           EKLL +Y  ++KP+  V++ ME TG+++D   L+ +S E+++ +  LEE ++ L+G  FN
Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485

Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           L+S  QL  +LF +L+ P+  KT KTG+  T+A  LE +    +PI++ IL+ R+L+K+K
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           +TY D LP+ ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAF++  
Sbjct: 545 NTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR A
Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT+NF ++YG+S  RL+ +L IP  EA+ +I+RYF  FP +  +IEKT    R+ GYVET
Sbjct: 665 KTVNFGVLYGMSAHRLSQELSIPYEEASAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGRR +  ++N+   S+R   ER A N P+QG+AAD+ + AM+ +   L   ++  +ML
Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL--RQMGARML 782

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+ E P+      + +   +MEKA      L VPL+V   +  +W
Sbjct: 783 LQVHDELLLEAPQARAEEVAALAKEAMEKA----YPLAVPLEVEAGIGEDW 829



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/286 (38%), Positives = 161/286 (56%), Gaps = 8/286 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + L DG    YR F+A   L+    G PV A+ GF   L K L+    +++   
Sbjct: 8   FEPKGRVLLADGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKAVF-- 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A++FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD+
Sbjct: 65  --VVFDAKALSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    AEKEG+ V I++ D+DL QLVS    +    +   I  E + +K+G+ PE+ V
Sbjct: 123 LATLAKKAEKEGYEVRILTADRDLYQLVSDCVAVLHP-EGHLITPEWLWEKYGLRPEQWV 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  
Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDL 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           RLS  L  +RTD+P+ + L      D  G R  +FL+ LEF  L++
Sbjct: 242 RLSLGLSRVRTDLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285


>gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L]
 gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L]
          Length = 891

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTEEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102]
 gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102]
          Length = 877

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 KHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 877

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGREFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342]
          Length = 882

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 304/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521
           ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        
Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K  +P D   +     H       I  L   L  +L  +    ++ +++ P+  ++ 
Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P 
Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T    LEQ+     PI+ +IL +RQ++KI+STY + L   I +   ++HT
Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      LI S+DYSQIELR+LAH
Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+ 
Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSP 729

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           +L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++
Sbjct: 730 KLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+  
Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +Q++   ME A    ++L VPL  +      W E
Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG+S  +RAF+A    L R    +GL  NAI  F NM   ++Q    + + +H  V
Sbjct: 6   LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
                +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ G+ P++
Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E +  N   +K+ K +EN++   E
Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A LS++L  +  + P+ + +E L  E  N  +L+ F K ++F + + ++  T
Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/535 (37%), Positives = 320/535 (59%), Gaps = 26/535 (4%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           KN    + L  +KK FE+E+  KI H+IK   ++L +Y I  + F  D  + +Y+L   +
Sbjct: 369 KNENYDKYLELIKKLFEDENIKKISHDIKNIYVILRKYDIDAKNFSFDTKIAAYLLQPSK 428

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           S + +  I  + LS    E              SD   +E  I+ +  I +++  L+ ++
Sbjct: 429 SDYILRDIILEKLSINIHE--------------SD---EESKIKETYCIKEIYEKLQKEI 471

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
               +  ++  ++ P++ V++ ME  G +ID+D L ++  +    + +LE+ I++ + E 
Sbjct: 472 KSANMEELFYNVELPLVKVLASMECEGFKIDKDRLTEIGEKFKVKIETLEKEIHEFADED 531

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN+ SPKQLG ILF KL  P   KTKTG + T A+ LE++    +PII  I+E+RQ++K+
Sbjct: 532 FNIKSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEKLK-DSHPIISKIIEYRQITKL 589

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            STY + L  H+     ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ F+  
Sbjct: 590 DSTYVEGLK-HVIDEDGKIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFVPN 648

Query: 741 PTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
             + +I SADYSQIELR+LAHIA    L   F++  DIH + A+E+F V+I++V+P MR 
Sbjct: 649 NEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIHTITASEVFKVHIDEVTPLMRS 708

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           +AK +NF I+YGI  F L+  + + R EA +YI  YF R+P + +YI++  +   Q+G+V
Sbjct: 709 NAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDEIISKAEQDGFV 768

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            TI  R+ +  E+ S    +R+  ER A+N PIQGSAAD+ + AM+ V++ L    L + 
Sbjct: 769 TTIMNRKRYIPEVQSRNKIVRSFGERLAMNTPIQGSAADVIKLAMVHVYEELIKRNLKST 828

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++LQ+HDEL+  V ++E+    Q++V  ME      +NL VPL+ ++ V   W E
Sbjct: 829 LILQVHDELILNVYKDELEEVKQMVVDKMEGV----MNLLVPLEADVNVGTTWYE 879



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 175/299 (58%), Gaps = 17/299 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++DG S +YRAF+A P L+ K +G+  NAI GF  ML K+     KE I  +
Sbjct: 1   MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKM-----KEEIKPN 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR++ Y DYKA R K+P  L  Q P+V+       I   EI GFEADD
Sbjct: 54  YIVTAFDKKAPTFRHKEYEDYKAGRAKMPSELNEQFPIVKEILNKLAINIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ DKD +QL +    +    K    +E  D   +I+++ + 
Sbjct: 114 LIGTLSQFAEEKGIEVYIVTGDKDALQLATDNVKIVINKKGMSEKEIYDRNRMIEEYEVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++ L GD  DNIPG+PGIG KTA  L++EYG++EN+L N   I  KK ++N++E
Sbjct: 174 PTQFIDVKGLMGDKSDNIPGVPGIGTKTAFKLIKEYGSIENVLENVENISGKKMKQNLIE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRVATT 291
           Y E A  S+KL  + T+VPI I LE +  +   D  G R     ++L F  LI  +A++
Sbjct: 234 YREQAIFSKKLATICTNVPIEIDLEEIKSKENYDIEGVR--QLFESLGFKSLIQNIASS 290


>gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
 gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
          Length = 877

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVNVDDMEYKGYEANDVIPMFENLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
 gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/519 (38%), Positives = 303/519 (58%), Gaps = 20/519 (3%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H  K  +  L   GI  +G   D  L +Y+L     S+D+  +    ++Y  +E  K
Sbjct: 388 KVVHGAKELEKELMDQGIEPQGIRFDTELAAYLLSPTDGSYDLEKLG---ITYYNQEFAK 444

Query: 523 SRKSSIP--IDKIS--DSQVQEHA-----IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
           +++   P   D +   DS+ Q        + +  +I  L+  L  +L   KL  +Y  ++
Sbjct: 445 AKEYLTPGAFDSLFSLDSEGQSAGPMGAFLSHCALIDALYETLSQRLEELKLTQLYGEIE 504

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+  V+++ME +G+ +D+  L      +++ +   +  IY+L+GE+FN++S +QLG IL
Sbjct: 505 LPLCPVLAEMERSGVLVDRKALAAFGEALAQGIEKDQALIYELAGEEFNINSTQQLGKIL 564

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F KL  P   KTKTG + T A+ LE++  G +PII+ IL++RQL+K+KSTYAD L   I 
Sbjct: 565 FDKLGLPPVKKTKTG-YSTNAEVLEKLR-GKHPIIEAILDYRQLTKLKSTYADGLGKVIA 622

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
               R+HT +    T TGRL+S EPNLQNIPI+T LG ++R  F++ P K L+ ADYSQI
Sbjct: 623 P-DGRIHTCFQNTVTATGRLSSTEPNLQNIPIRTQLGAQLREMFVAAPGKVLVDADYSQI 681

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR+LAH+A    + + F +  DIH + A+++FGV  ++V+PQMRR AK +NF I+YGIS
Sbjct: 682 ELRLLAHMAGDQAMIEGFHSGADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGIVYGIS 741

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
           PF L+  + +   +A +Y+ +YF  + G+  Y++      +Q+GYV T+FGRR    E+ 
Sbjct: 742 PFSLSQDIGVSVQQAKEYMDKYFAHYSGVRAYMDGVVEQGKQDGYVATLFGRRRWLPELK 801

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   + R+  ER A+N PIQG+AADI + AMI V   L    L  +++LQ+HDEL+ E P
Sbjct: 802 SSNFNTRSFGERVALNMPIQGTAADIIKLAMIRVRDRLLREGLEGRLVLQVHDELIVECP 861

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           E E  T  +++   ME  C     L +PL         W
Sbjct: 862 EAEAETVCRLVKEEMEGVC----QLSIPLLAETHAGTTW 896



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 150/294 (51%), Gaps = 17/294 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S + RAFY          G P NAI GF N+L KLL +S  +++     V FD
Sbjct: 4   LMVLDGNSLVNRAFYGVSQNLTTRSGQPTNAIFGFLNILGKLLDDSNPDALC----VTFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+  Y  YKA R  +P+ L  Q+P+++    A  IP  E+ G+EADD++ T   
Sbjct: 60  RKAPTFRHLAYDGYKATRKGMPDELASQMPILKDVLSAMNIPIYEMDGWEADDLMGTIAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180
                G+   +++ DKD +QLV+  T +            + +  E   +++G  P  ++
Sbjct: 120 KDTAAGWDTIVVTGDKDSLQLVTDHTTVKLVSTRMGRTTTKDMTPEVFREEYGFDPIHII 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-------INASRIKQKKRRENI 233
            L+AL GD+ DNIPG+ G+G KTA  L+  YG+++ +        +      +    + +
Sbjct: 180 DLKALMGDASDNIPGVKGVGEKTAMALVGRYGSIDALYEAMPTPEMAPGTPAKPGVIKKL 239

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            E  E AR+S  L  +R D P+    E  + ++ +  RL      LEF KLI++
Sbjct: 240 QEGEEMARMSYDLATIRCDAPLDFDPEQNLRKEVDNDRLYQLFLELEFAKLIDK 293


>gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322]
 gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322]
          Length = 837

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521
           ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        
Sbjct: 331 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 390

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K  +P D   +     H       I  L   L  +L  +    ++ +++ P+  ++ 
Sbjct: 391 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 447

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P 
Sbjct: 448 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 507

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T    LEQ+     PI+ +IL +RQ++KI+STY + L   I +   ++HT
Sbjct: 508 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 564

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      LI S+DYSQIELR+LAH
Sbjct: 565 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 624

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+ 
Sbjct: 625 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 684

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++
Sbjct: 685 YLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 744

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+  
Sbjct: 745 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 804

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +Q++   ME A    ++L VPL  +      W E
Sbjct: 805 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 835



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 142/249 (57%), Gaps = 5/249 (2%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           + +N  ++ + +H  V FD    TFR E Y +YKA R K P     Q+P +R   +  G+
Sbjct: 1   MFENVMQKEMPTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGV 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKI 163
              E+  +EADDII T     +K+ F V ++S D+DL QL + T  +  TVK     E  
Sbjct: 61  KYYELPNYEADDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESY 120

Query: 164 DIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
             EH+ +K+ G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E +  N  
Sbjct: 121 TPEHIAEKYDGLTPKQIIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENID 180

Query: 223 RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
            +K+ K +EN++   E A LS++L  +  + P+ + +E L  E  N  +L+ F K ++F 
Sbjct: 181 EMKKSKMKENLINDKEQAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFK 240

Query: 283 KLINRVATT 291
           + + ++  T
Sbjct: 241 QFLAKLDIT 249


>gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 891

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  K+ 
Sbjct: 399 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+E      ++ GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKRKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 176/308 (57%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      ++   ++L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVVPMFESLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 877

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
 gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
          Length = 891

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 KHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 891

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 891

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPQQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 891

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 891

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAREASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346]
          Length = 882

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 210/515 (40%), Positives = 302/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521
           ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        
Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K  +P D   +     H       I  L   L  +L  +    ++ +++ P+  ++ 
Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P 
Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T    LEQ+     PI+ +IL +RQ++KI+STY + L   I +   ++HT
Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      LI S+DYSQIELR+LAH
Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+ 
Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 729

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++
Sbjct: 730 NLGITREQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN PIQGSAADI + AMI +   L++ KL   MLLQ+HDELVFEVPE E+  
Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMAHRLKEEKLQATMLLQVHDELVFEVPESELEQ 849

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +Q++   ME A    ++L VPL  +      W E
Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG+S  +RAF+A    L R    +GL  NAI  F NM   ++Q    + + +H  V
Sbjct: 6   LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
                +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ G+ P++
Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E +  N   +K+ K +EN++   E
Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A LS++L  +  + P+ + +E L  E  +  +L+ F K ++F + + ++  T
Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKDLEKLVPFYKEMDFKQFLAKLDIT 294


>gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3]
 gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3]
          Length = 891

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  ++ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLEKL-MDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY+       +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMSDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIGKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELVVPLKVDYSYGPTW 887



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI]
 gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
          Length = 877

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L + F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
 gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
          Length = 878

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 196/528 (37%), Positives = 322/528 (60%), Gaps = 27/528 (5%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514
           F  +E   K   ++K  ++ L   G  +RG   D++L +Y+++    S++   +A   +S
Sbjct: 363 FLADEKIAKDIFDLKRSRVALMWQGFDLRGVAFDLLLATYIINPTNVSNEFKKVA---MS 419

Query: 515 YTRKEIL-------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           Y   ++L       K  K +I      +SQ+  H+I+ +  +L+L      +L  +  L 
Sbjct: 420 YDYDDVLYDEEVYGKGAKRAIA----EESQIARHSIDIATAVLKLKETALEQLKEQDQLT 475

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++E ++ P+ DV+++ME  G+ +D   L ++  ++   + +LE  IY+ +G  FN++SPK
Sbjct: 476 LFEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHAGMSFNINSPK 535

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG++LF KL  P   KTKTG + T A  LE+++   +PIIK+I+E+R L+K+ STY + 
Sbjct: 536 QLGEVLFDKLSLPVIKKTKTG-YSTNADVLEKLSDA-HPIIKSIMEYRTLTKLYSTYIEG 593

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L         +VHT ++ A T TGRL+S+EPNLQNIPI+ + G+ IR+AF+  P+++   
Sbjct: 594 LKKACYS-DGKVHTIFNQALTQTGRLSSIEPNLQNIPIRLEEGRLIRKAFV--PSEEGWV 650

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           ++ ADYSQIELRILAHI+    L + F+   DIH+  A ++F V+ E+++  +RR AK I
Sbjct: 651 ILGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAI 710

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYG+S F L+  L I + EA  YI  Y   + GI++Y+E T    + +GY  T+F 
Sbjct: 711 NFGIIYGMSAFGLSENLNITQKEAKKYIDHYLETYSGINQYMEDTVKDAKFHGYATTLFN 770

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  E++    ++R   ER A+NAPIQG+AADI ++AMI V  ++++ ++ +++LLQ+
Sbjct: 771 RRRYIPELSQKNYALRQFGERTAMNAPIQGTAADIIKKAMIDVANAMKEKQVKSRLLLQV 830

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FEVP+EE+    +++  +ME      + L+VPLK +      W
Sbjct: 831 HDELIFEVPQEELDLMIELVTKTMEDV----VKLQVPLKADYSYGPTW 874



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 175/329 (53%), Gaps = 18/329 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N L L+DG+S +YRA+YAT     L +   G+  NA+ GF NM+ K++ +       +H 
Sbjct: 2   NTLVLIDGNSLMYRAYYATAYSGNLMKTSQGIFTNALYGFVNMMNKVMDDYHH----THM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E    YK  R  +P+ +  Q+ L++      G+  +E+  +EADDII
Sbjct: 58  LVAFDAGKTTFRHEFLETYKDGRKPMPDEMRSQINLIKKYLDLLGVKRLELPTYEADDII 117

Query: 122 ATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
            T   + EK  F  + II+ DKDL+Q+    T ++ T K     E    E V +K+ + P
Sbjct: 118 GTLARLGEKADFEKIHIITGDKDLLQMADEKTTVHITRKGVTDIESFTPEAVFEKYELSP 177

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++V L+ L GD  DN+PGIPG+G KTA  LL+EY  +EN++ N + +K  K +E +   
Sbjct: 178 SQIVDLKGLMGDPSDNLPGIPGVGEKTAIKLLKEYQTVENLVANTASLK-GKMKEKVEAN 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A L +++  + TDVP+++  + L+ +  +   LI   K +EF   + ++      D 
Sbjct: 237 VEQALLCKRMATIHTDVPLSVTFDDLLYQGPDVAGLIELFKEMEFNAFLKKMKLQEVKDE 296

Query: 297 ANIEPVVL-----DINTTENKGIAIETEI 320
               PV +     ++NT   K  AI  EI
Sbjct: 297 TPKAPVAIIGSLEELNTKIFKHSAIHVEI 325


>gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087]
          Length = 880

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 209/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRAKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G+KFN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQKFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENTGQTWYE 878



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 166/302 (54%), Gaps = 19/302 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ +N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD   +TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKMTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIKIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 AT 290
            T
Sbjct: 294 GT 295


>gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271]
 gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271]
          Length = 891

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 307/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  ++ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLEKL-MDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L   F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +  +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLKRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPQEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGANVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIEQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
 gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
          Length = 880

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 208/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILLTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-ASDGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/296 (39%), Positives = 163/296 (55%), Gaps = 19/296 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQIEALSKFYDEMGFKQL 289


>gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
 gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
          Length = 907

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 196/498 (39%), Positives = 299/498 (60%), Gaps = 37/498 (7%)

Query: 481 ISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +S+RG      +D +L++Y+LD   ++  I  +A+++L  T  E   +R +         
Sbjct: 437 LSVRGTVVEPGDDPLLVAYLLDPANTNMPI--VAERYLRTTWPEDAATRAA--------- 485

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                       +  +L   L P L  E    +YE ++KP+  V+ +ME+ G+++D D L
Sbjct: 486 ------------ITYRLLQDLPPHLD-EARRKLYEEVEKPLSAVLKRMEVRGVRLDSDYL 532

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTA 654
           + +S  ++  + +LE  I+ L+G +F + S  QL  +L+ +L   SG KTK TG+  T  
Sbjct: 533 RGLSEALAGRIATLEAEIHRLAGREFAIRSRDQLETVLYDELGLASGKKTKLTGKRSTAV 592

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +   ++PII  +LE+R+L K++ TY D LPN +N RT R+HT +S  +  TGRL+
Sbjct: 593 SALEPLR-NEHPIIPALLEYRELEKLRGTYLDPLPNLVNPRTGRLHTTFSQTTAATGRLS 651

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           SL PNLQNIPI+++LG++IR+ FI+     LISADYSQIELR+LA IA    + Q F   
Sbjct: 652 SLNPNLQNIPIRSELGREIRKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREG 711

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA++ G+  + ++P  RR AKT+NF ++YG+S  RL+ +L IP +EAA +I  
Sbjct: 712 ADIHRRTAAQVLGLAEDAITPNQRRAAKTVNFGVLYGMSAHRLSNELGIPYAEAAQFIDV 771

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF+ +PGI  YIE+T +F R++GYVET++GRR +  E+ S    IR   ER A N PIQG
Sbjct: 772 YFNTYPGIRRYIERTLDFGREHGYVETLYGRRRYVPELKSQNRVIREAGERLAYNMPIQG 831

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ + + L+   L  ++LLQ+HDEL+ E P  +    + +    ME+A   
Sbjct: 832 TAADIIKIAMVRLDQELD--ALGARLLLQVHDELLIEAPATQADRVAALTREVMEQAA-- 887

Query: 955 KINLRVPLKVNIKVSNNW 972
             +L VPL V +    NW
Sbjct: 888 --HLSVPLAVEVGTGPNW 903



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 141/257 (54%), Gaps = 9/257 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG +  YR+++A P L     G   +AI GF     +L + +  + I     V+
Sbjct: 7   DTLVLIDGHALAYRSYFALPPLHNSR-GEATHAILGFLRHTLRLARQASNQVI-----VV 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+  Y  YK+ R + P  L  Q+  +R    A G P +E  GFEADD+I T 
Sbjct: 61  FDPPGGTFRHAQYGGYKSGRAQTPADLPAQINRIRDLVDALGWPRLEEPGFEADDVIGTL 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T +AE +GF V I+++D+D  QL+     +  +     +  E V+ K+G+   + V  +A
Sbjct: 121 TKMAEGKGFQVRIVTSDRDAYQLLDEHVRVLAS-DFSLVGPEDVLAKYGVTVGQWVDYRA 179

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETARL 242
           LTGD+ DNIPG  GIG KTAA LLQEYG L+ +L    A  ++ K  RE +L        
Sbjct: 180 LTGDASDNIPGAKGIGPKTAARLLQEYGTLDAVLAAARAGTLEPKGTREKLLASEADVLF 239

Query: 243 SRKLVMLRTDVPITIPL 259
           SR+L  + TD+P+ + L
Sbjct: 240 SRELSCMVTDLPLKVDL 256


>gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4]
 gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4]
          Length = 887

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 198/493 (40%), Positives = 306/493 (62%), Gaps = 15/493 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIA--QKWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543
           DI+L SY+L++  +S D++ +A   ++   +  E +  K  K +IP +K   + + +H  
Sbjct: 402 DILLASYLLNTKDNSKDLSEVATEHEYYEVSSDESVYGKGAKIAIPEEK---TIIYDHIA 458

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
                I  L   L   L   +   ++  ++ P+  V+++ME+TG++++   L ++  E +
Sbjct: 459 RKIKAIRILSKQLGENLEKNEQTKLFNEMELPLSMVLAEMELTGVKVNDKRLMEMKEEFA 518

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             L  +E+ +Y+L+GEKFNL+SPKQLG ILF K+ +P   KTKTG + T    LEQ+   
Sbjct: 519 IRLTDIEQRVYELAGEKFNLNSPKQLGVILFEKMGYPVIKKTKTG-YSTAVDVLEQLRE- 576

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             PI+++IL++RQ++KI+STY + L   I+K+T ++HT Y      TGRL+S++PNLQNI
Sbjct: 577 QAPIVEHILDYRQIAKIQSTYIEGLLKVIDKKTGKIHTRYMQTIAQTGRLSSVDPNLQNI 636

Query: 724 PIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           PI+ + G+KIR+AF+ S    ++ ++DYSQIELR+L H++    L + F    DIH   A
Sbjct: 637 PIRLEEGRKIRQAFVPSHEGWEIFASDYSQIELRVLGHVSDDKLLKEAFIEGQDIHSSTA 696

Query: 783 AEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            ++FG+   E+VS +MRR AK +NF I+YGIS + L+  L I R EA  +I  YF ++PG
Sbjct: 697 MQVFGIGSPEEVSSEMRRRAKAVNFGIVYGISDYGLSQNLGISRKEAQHFIDTYFEKYPG 756

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E      +  G+VET+F RR +  EINS   ++R+  ER AIN PIQGSAADI +
Sbjct: 757 VKTYMEDIVREAKDKGFVETLFQRRRYLPEINSRNFNLRSFAERTAINTPIQGSAADIIK 816

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI + + L++  +   MLLQ+HDEL+FE P+EEI     ++V  ME A    + L VP
Sbjct: 817 IAMIKMDQKLKESTMKATMLLQVHDELIFEAPKEEIEQLRALVVEVMEGA----VELSVP 872

Query: 962 LKVNIKVSNNWQE 974
           LKV+     +W E
Sbjct: 873 LKVDSNSGKSWYE 885



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 170/303 (56%), Gaps = 12/303 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M ++  L L+DG+S  YRAF+A  + L   K+ +GL  NA+ GF NM+  +L   +    
Sbjct: 2   MSEKKKLVLIDGNSVAYRAFFALHSQLERMKNKNGLHTNALYGFHNMIDSVLTKEK---- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+  + +YKA R K P     Q+P +R     FGI   E++ FEA
Sbjct: 58  PTHVLVAFDAGNTTFRHSFFDEYKAGRSKTPREFSEQMPYLRELLDGFGIRHYELENFEA 117

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     +   + V +IS D+DL QL      +  TVK     ++   E + ++ G
Sbjct: 118 DDIIGTLATKVDPTIYDVVVISGDRDLTQLAKENVRVDITVKGVSELKEYTTESIYEEMG 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ ++ L GD+ DNIPG+  IG KTA  LL+EYG++E I  N   +K+ K +EN+
Sbjct: 178 ISPLQIIDMKGLAGDASDNIPGVTKIGEKTALKLLKEYGSVEGIYENIDLLKKSKMKENL 237

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT-Y 292
           +   ETA LS++L  + TD PI I +E L     N  +LISF K ++F   ++++ T  Y
Sbjct: 238 INEKETALLSKRLATIDTDSPIKISVEELSFNGPNMEKLISFYKEMDFNSHLSKLDTAEY 297

Query: 293 DCD 295
           D +
Sbjct: 298 DAE 300


>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 899

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 202/515 (39%), Positives = 318/515 (61%), Gaps = 12/515 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K GH++K   L+L    ++++G  +D+ L+SY+L+  R  H +  ++++ L      +  
Sbjct: 391 KGGHDLKVLSLLLGGMKLTLQGAHDDVELLSYLLNPSRREHALPDLSRERLGLELPALPA 450

Query: 523 SR--KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           +   K   P+ + S  +V       ++   +L   L  +L    L  +   ++ P++ ++
Sbjct: 451 TAEGKKGRPLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALARDMELPLLPIL 510

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++ME  G+++D  + K +S ++     +  ++I+ L+G++FN+ S  QL  +L+ KL+ P
Sbjct: 511 ARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEFNVGSNPQLAQVLYEKLQLP 570

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              K KTG   +T Q++ +     +P+   ILE+R LSK+KSTY D+LP  + K   R+H
Sbjct: 571 ILKKGKTG--PSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLPGLVAK-DGRIH 627

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T Y  A+T TGRL+S +PNLQNIP++T+LG++IRRAF++    +L+SADYSQ+ELR+LAH
Sbjct: 628 TTYHQAATATGRLSSSDPNLQNIPVRTELGREIRRAFVAEAGYQLVSADYSQVELRLLAH 687

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           IA+   L   F++  DIH   AAEIFGV  +KV    RR AKT+NF I YG+SP  L+T+
Sbjct: 688 IAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLSTR 747

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I   EA D I+RYF R+ GI  Y+E T    R+ GYVET+FGRR    ++NS   ++ 
Sbjct: 748 LSISVEEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMFGRRRLMADLNSKNRAVA 807

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAIN PIQG+AAD+ ++AM++V ++L   +LAT MLLQ+HDEL+FE PE E+   
Sbjct: 808 QAAERAAINMPIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDR- 866

Query: 941 SQIIVHSMEKACLPKI-NLRVPLKVNIKVSNNWQE 974
               V ++ + C+  +  L+VPLKV++     W +
Sbjct: 867 ----VKALARQCMSSVATLKVPLKVDVGAGKTWAD 897



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/282 (37%), Positives = 165/282 (58%), Gaps = 5/282 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D SSFI+RA++A P LS    G+P NA+ GF  M+ K    S K+   +H A+ FD
Sbjct: 12  LTLIDASSFIFRAYHAVPPLSTSK-GVPTNAVLGFTRMVLK----SLKDLEPTHIALAFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             +   R +I P+YKA+R   PE L+PQ  L+R   +A  +P +E+ G+EADD+I T   
Sbjct: 67  KDSRAERQKIDPNYKAHREGPPEDLVPQFALIRKVVEALNLPVLEVPGWEADDVIGTLAA 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A+ EGF V +++ DKD +Q+V     L+D +K+       V ++ GI P +M    +L 
Sbjct: 127 RAKAEGFCVQVVTGDKDFIQIVDEDVRLFDPMKDVHTGPAEVKERLGIEPRQMRDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+P +PGIG KTAA LLQ++G+++ +L     +K+ K RE I  + E+   +R+L
Sbjct: 187 GDAVDNVPKVPGIGDKTAAALLQQFGDVDTMLARLDEVKKPKIREAISSHRESLLRARQL 246

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           V   T + + + +  LI    +  R       LEF +L+N +
Sbjct: 247 VTFNTQLDLKVTIPELIRRPIDNARARQLFTELEFFRLVNEL 288


>gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1]
 gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1]
          Length = 891

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L   F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330]
          Length = 880

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 209/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQAWYE 878



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 AT 290
            T
Sbjct: 294 GT 295


>gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
 gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
          Length = 857

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 197/490 (40%), Positives = 306/490 (62%), Gaps = 20/490 (4%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           F D+ L++Y+LD    +++ + + + +           +  SI ID+  ++  +++    
Sbjct: 385 FYDVTLIAYLLDPTHVTYNRSYVGELF-----------KVPSIYIDE--NASFEQNGNMI 431

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           ++ +L L+      L+   +  +++ +++P+I+V+++ME  GI ID++  K+V   + + 
Sbjct: 432 ADFLLALYTSSYELLVKNDIEKLFKEVEQPLIEVLAEMEKNGISIDEENWKKVRKNMKEK 491

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
              L   IY  +GE+FN++SPKQL  ILF K+  P+G KTKTG + T A  LE +   D 
Sbjct: 492 EEKLLLEIYREAGEEFNVNSPKQLSHILFDKMGMPTGKKTKTG-YSTAADVLENLAI-DY 549

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P +KNILE+R L+K+ STY D++P  + K T+RVHT ++   T TGRL+S +PNLQNIP+
Sbjct: 550 PFVKNILEYRTLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNIPV 609

Query: 726 KTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +T+ G+ IR  F+        IS+DYSQ+ELR+LAH++    L + FEN  DIHR  A+E
Sbjct: 610 RTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTASE 669

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV  E+V+ + R HAK +NF IIYGIS F L+ QL I R +A +YIK Y  R+PGIHE
Sbjct: 670 VFGVPFEEVTSEQRSHAKAVNFGIIYGISDFGLSKQLGISRKKADEYIKTYLKRYPGIHE 729

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +++K     R+ G V+T+FGR     +INS     R+  ER A+N PIQGSAADI + AM
Sbjct: 730 FMKKMTEEARKTGKVKTLFGRYRDLPDINSKNFQRRSFAERTAMNTPIQGSAADIMKIAM 789

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I V+  ++  K  +++LLQ+HDELV E  +EE+   S+++  +ME      ++L+V L  
Sbjct: 790 IQVYGKMKKGKYKSRILLQVHDELVIEAVKEEVEEISKLLKETMESV----VSLKVKLVA 845

Query: 965 NIKVSNNWQE 974
           ++ V  NW E
Sbjct: 846 DVHVGKNWAE 855



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/263 (42%), Positives = 155/263 (58%), Gaps = 12/263 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L ++DGSS  YRAFYA PLLS  H+G+  NA+ GF  ML  L +N   E IA    V
Sbjct: 2   DKKLVIIDGSSLFYRAFYALPLLS--HNGIYTNAVYGFLRMLAGLYRNLDPEYIA----V 55

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRNEIY DYKA R   P  L+PQ  L++   +  G+   E+ G+E DDI+ T
Sbjct: 56  AFDKDRYTFRNEIYKDYKATRKSAPAELVPQFKLIKDLLRVMGVAVYEMAGYEGDDILGT 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
             +   K+ F V I++ D+D +QL S    ++ T K      ++    V++K+GI P ++
Sbjct: 116 LAF-KYKDEFPVLIVTGDRDSLQLSSEKVTVFLTQKGISNMAEMTPSAVVQKYGIKPSQI 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+ GIG KTA  LLQ+Y NLENI  N   IK  ++ + +L   E 
Sbjct: 175 IDMKALMGDTSDNIPGVKGIGEKTAVKLLQKYENLENIYKNIEEIKGAQKTK-LLSGKED 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262
           A LSR L  +R D+PI   LE +
Sbjct: 234 AYLSRNLAKIRIDIPINATLEEM 256


>gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
 gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
          Length = 891

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L   F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
 gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
          Length = 877

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 198/528 (37%), Positives = 319/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K++  N    K   + K   + L   G+ ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 358 FKEWLANGEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 417

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 418 KETHAVKSDEEVYGKGAKRAVPGLEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 473

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D + L+ +  E++  L  +E+ IY L+G +FN++SPK
Sbjct: 474 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 533

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 534 QLGVILFEDLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 591

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 592 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 649

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 650 MYAADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 709

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY+++     +Q GYV T+  
Sbjct: 710 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLN 769

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 770 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 829

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 830 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 873



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S++L  + TD PIT+ ++ +  +      LI   + L FT L+N++  T +  A A 
Sbjct: 237 ALMSKELATIITDAPITVHVDDMEYKGYEPSDLIPMFENLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
 gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
          Length = 871

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 178/420 (42%), Positives = 273/420 (65%), Gaps = 7/420 (1%)

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           +LR KL   K+  ++  ++ P++  +  ME  GI+++ D LKQ   +++  +  LE+ IY
Sbjct: 457 VLRQKLRDTKMDTLFRDIEMPLVFTLFDMEQNGIRVEADALKQYGDQLAGKIAELEKEIY 516

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           + +GE FN++SPKQLG +LF  +K P G KTKTG + T A  LE++   ++P++  ILE+
Sbjct: 517 EEAGETFNINSPKQLGVVLFENMKLPGGRKTKTG-YSTAADVLEKL-APEHPVVAKILEY 574

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQ +K+KSTYAD L N+I +   R+H  ++   T TGR++S EPNLQNIP++ +LG+ IR
Sbjct: 575 RQYTKLKSTYADGLANYI-QDDGRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIR 633

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           + FI     + + ADYSQIELR+LAH +    L Q ++   DIHR+ A+++F +  ++V+
Sbjct: 634 KVFIPEEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRITASQVFHIPFDEVT 693

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           PQ RR+AK +NF I+YGIS F L+  L I R EAA YI  YF  +PGI  +++      +
Sbjct: 694 PQQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAKYIDDYFATYPGIKTFLDHAVTHAK 753

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           + GYV T+FGRR    E++S     R+  ER A+N+PIQG+AADI + AMI V++ L+D 
Sbjct: 754 EEGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGAAADIIKIAMIRVNQRLKDQ 813

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K+ ++++LQ+HDEL+ E  E E+     I+   ME A      L+VPL++++   +NW E
Sbjct: 814 KMKSRLVLQVHDELLIEAYEPELDEVQNILKEEMEHAA----ELKVPLEIDMHTGDNWYE 869



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 156/287 (54%), Gaps = 11/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NAI GF  +++KLL+  + E    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGLPDLTNA-EGLHTNAIYGFLTIMFKLLEEEKPE----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y +YK  R  + + L  Q+P+++   +A  +  IE  G EADD+I T + 
Sbjct: 60  VHAPTFRHKMYAEYKGTRKPMADELRQQVPVIKEVLRAMRVKTIECAGLEADDLIGTLSN 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPEKMV 180
             E EG  VT+IS D+DL+QL +    +     K+ K +IE      V +++ + P++ +
Sbjct: 120 RCENEGMEVTVISGDRDLLQLATEHVKIRIPKTKQGKTEIEDYYAKDVEERYQVTPKEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+P IG KTA  ++ +Y ++E    +   +K  +  + + E+ + A
Sbjct: 180 DLKALMGDTADNIPGVPSIGEKTATKIITQYHSIEEAHEHVDELKPPRASKALSEHWDLA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            LS++L  +         L    L +        F + LEF  L++R
Sbjct: 240 VLSKELATINVKADFPYELSEAKLGNLYTEEAYIFFQKLEFKNLLSR 286


>gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 873

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 205/499 (41%), Positives = 306/499 (61%), Gaps = 37/499 (7%)

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G+S++G   D  L +Y+ + G + +D+ S+A+ +L  +     +  ++ +P+        
Sbjct: 406 GVSLQGVIGDPSLAAYLYEPGETHYDVKSLAETYLPASCGGTAQDVEALMPV-------- 457

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                            L   +    L  +Y  ++ P+  V++ ME+ GI +D+ +L +V
Sbjct: 458 -----------------LEGLMAERGLTELYRDIELPLTKVLANMEVNGITLDKGMLDEV 500

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           +  ++K +  LE+   + +GE FN++SPKQLG ILF KL  P   KTK+G + T    LE
Sbjct: 501 TKSMTKQVADLEQKAKEEAGEDFNVNSPKQLGVILFEKLGLPIIKKTKSG-YSTDVSVLE 559

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q+  G++PII+ I+E+R LSK+ STY  +L   IN  T R+HT ++  +T+TGRL+S +P
Sbjct: 560 QLQ-GEHPIIETIMEYRTLSKLLSTYLVALHPLINPNTGRIHTHFNQMATVTGRLSSTDP 618

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSL 775
           NLQNIP +T++G+++RR F+  P K    L+S DYSQ+ELR++A IA    L   F +  
Sbjct: 619 NLQNIPTRTEVGKQMRRMFV--PGKGYDLLMSCDYSQVELRVMASIAGDERLIDAFRHGQ 676

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+EIFGV IE V+P MR  AKT+NF IIYGIS F L  QL +PRSEAA YI  Y
Sbjct: 677 DIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGIIYGISDFGLGRQLGVPRSEAAQYIDSY 736

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+ G+ EY+E  K   R+ GYVET+FGRR +  +I++   + R+  ER AIN PIQG+
Sbjct: 737 FARYTGVKEYMEGEKKKAREMGYVETLFGRRRYLPDIHAKNFNRRSFAERTAINTPIQGT 796

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V K L++  + +++LLQ+HDELV EV EEE    S I+ ++ME+A    
Sbjct: 797 AADIIKIAMLHVAKELKEAGVKSRVLLQVHDELVLEVVEEEKDKVSAIVKNAMERA---- 852

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L+VPL  +I     W +
Sbjct: 853 VTLKVPLVADIAFGKTWAD 871



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 159/292 (54%), Gaps = 15/292 (5%)

Query: 5   NHLFLV-DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N  FL+ DGSS I+RAF+A P  + K  G+   A+ G CNML KLL+  +     S+ AV
Sbjct: 2   NETFLIIDGSSLIHRAFFALPSFTNKK-GVNTGAVYGLCNMLLKLLEEVK----PSYMAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR E + DYK  R   P  L  Q PL      + GIP +E+  +EADD+I T
Sbjct: 57  AFDKSRHSFRTEKFADYKGQRKATPPELKEQFPLAIELLTSMGIPTLEMDNYEADDLIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
            +  A KE   V I++ D+D  QL+     +Y T K        D     K++ G+ P +
Sbjct: 117 LSATAPKE-MKVIIVTGDRDEFQLIKENVHVYFTKKGITQIGNYDEAAFQKEYEGLSPRQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+ L GD+ DNIPG+PG+G KTA  L++EY ++E +L +A  +K K  +E ++ +  
Sbjct: 176 IIDLKGLMGDTSDNIPGVPGVGPKTALKLIKEYQSVEAVLDHAEEVKGKSLKEKLITFRN 235

Query: 239 TARLSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            A LS++L  +   VP+ T P  + +       R++  +  L+F  + NR +
Sbjct: 236 QALLSKELATICLTVPMDTDPASYRLTGLTEKSRVL--MDDLQFKNMWNRFS 285


>gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115]
          Length = 880

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 208/515 (40%), Positives = 309/515 (60%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L ++   ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTENNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 167/303 (55%), Gaps = 19/303 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQIETLSKFYDEMGFKQLKAQL 293

Query: 289 ATT 291
            T+
Sbjct: 294 GTS 296


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 271/411 (65%), Gaps = 8/411 (1%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           EKLL +Y  ++KP+  V++ ME TG++ D   L+ +S E+++ +  LEE ++ L+G  FN
Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485

Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           L+S  QL  +LF +L+ P+  KT KTG+  T+A  LE +    +PI++ IL+ R+L+K+K
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           +TY D LP+ ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAF++  
Sbjct: 545 NTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR A
Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT+NF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYVET
Sbjct: 665 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGRR +  ++N+   S+R   ER A N P+QG+AAD+ + AM+ +   L +  +  +ML
Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARML 782

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+ E P+      + +   +MEKA      L VPL+V + +  +W
Sbjct: 783 LQVHDELLLEAPQARAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDW 829



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/286 (39%), Positives = 162/286 (56%), Gaps = 8/286 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+    +++   
Sbjct: 8   FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKAVF-- 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD+
Sbjct: 65  --VVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    AEKEG+ V I++ D+DL QLVS    +    +   I  E + +K+G+ PE+ V
Sbjct: 123 LATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHP-EGHLITPEWLWEKYGLRPEQWV 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  
Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDL 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           RLS +L  +RTD+P+ + L      D  G R  +FL+ LEF  L++
Sbjct: 242 RLSLELSRVRTDLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 271/411 (65%), Gaps = 8/411 (1%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           EKLL +Y  ++KP+  V++ ME TG++ D   L+ +S E+++ +  LEE ++ L+G  FN
Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485

Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           L+S  QL  +LF +L+ P+  KT KTG+  T+A  LE +    +PI++ IL+ R+L+K+K
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           +TY D LP+ ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAF++  
Sbjct: 545 NTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR A
Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT+NF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYVET
Sbjct: 665 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGRR +  ++N+   S+R   ER A N P+QG+AAD+ + AM+ +   L +  +  +ML
Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARML 782

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+ E P+      + +   +MEKA      L VPL+V + +  +W
Sbjct: 783 LQVHDELLLEAPQARAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDW 829



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/286 (39%), Positives = 162/286 (56%), Gaps = 8/286 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+    +++   
Sbjct: 8   FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKAVF-- 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD+
Sbjct: 65  --VVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    AEKEG+ V I++ D+DL QLVS    +    K   I  E + +K+G+ PE+ V
Sbjct: 123 LATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHP-KGHLITPEWLWEKYGLRPEQWV 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  
Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDL 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           RLS +L  +RTD+P+ + L      D  G R  +FL+ LEF  L++
Sbjct: 242 RLSLELSRVRTDLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285


>gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405]
          Length = 880

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 209/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIKIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 AT 290
            T
Sbjct: 294 GT 295


>gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus]
          Length = 954

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 182/402 (45%), Positives = 270/402 (67%), Gaps = 7/402 (1%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           L+  +  +++ ME TG+++D   L+Q+ AE+++ L ++E  IY+L+G++FN++SPKQLG 
Sbjct: 555 LEHALAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEFNINSPKQLGT 614

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +LF KL+ P   KTKTG + T+A  LE++    + I+++IL +RQL K++STY + L   
Sbjct: 615 VLFDKLQLPVLKKTKTG-YSTSADVLEKL-APHHEIVEHILHYRQLGKLQSTYIEGLLKV 672

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750
           ++  T +VHT ++ A T TGRL+S+EPNLQNIPI+ + G+KIR+AF+ S P   + +ADY
Sbjct: 673 VHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 732

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LAHIA+   L + F   LDIH   A +IF V+ E V+  MRR AK +NF I+Y
Sbjct: 733 SQIELRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVY 792

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS + LA  L I R EAA++I+RYF  FPG+ +Y++      +Q GYV T+  RR +  
Sbjct: 793 GISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLP 852

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +I S   ++R   ER A+N PIQGSAADI ++AMI +  S+ + +L  ++LLQ HDEL+ 
Sbjct: 853 DITSRNFNVRTFAERTAMNTPIQGSAADIIKKAMIDLSVSVREERLQARLLLQGHDELIL 912

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           E P+EEI    +++   ME+A    + LRVPLKV+      W
Sbjct: 913 EAPKEEIGRLCRLVPEVMEQA----VTLRVPLKVDYHYGPTW 950



 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 178/297 (59%), Gaps = 9/297 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L     E   +H
Sbjct: 75  MMLKNKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTH 129

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + DYK  R + P  L  Q PLVR   +A+ IPA E+  +EADDI
Sbjct: 130 ILVAFDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLVRELLKAYRIPAYELDHYEADDI 189

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGFAV +IS D+DL QL SP   +  T K     E    E V++K+G+ P
Sbjct: 190 IGTMAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTP 249

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK +K +EN+ +Y
Sbjct: 250 EQIVDLKGLMGDKSDNIPGVPGIGKKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQY 309

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            + A LS++L  +  D P+ + L+ ++ +  +  ++++  + L F   ++++A   D
Sbjct: 310 RDLALLSKQLAAICRDAPVELTLDDIVYKGEDREKVVALFQELGFQSFLDKMAVQTD 366


>gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621]
 gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621]
          Length = 891

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 198/528 (37%), Positives = 319/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K++  N    K   + K   + L   G+ ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 372 FKEWLANGEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 431

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 487

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D + L+ +  E++  L  +E+ IY L+G +FN++SPK
Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 547

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 605

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 606 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 664 MYAADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 723

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY+++     +Q GYV T+  
Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLN 783

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 843

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 844 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 887



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S++L  + TD PIT+ ++ +  +      LI   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKELATIITDAPITVHVDDMEYKGYEPSDLIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187]
 gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187]
          Length = 877

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L   F
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 676

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 857 ----IELAVPLKVDYSYGPTW 873



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 237 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 296

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 297 LDDITFDI 304


>gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 888

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 187/526 (35%), Positives = 331/526 (62%), Gaps = 16/526 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
            K + E+ H  K+ ++ K  +++L   G+ + G  +D+++ SY++ +   S D+A++A++
Sbjct: 369 FKNWIEDPHAKKVLYDAKRSQVILKGLGMDLEGVSDDVLIASYLIHARDLSGDVANVARE 428

Query: 512 ----WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
               +L+Y  +   K +K ++P DK   +++ +H +   +VI  L  +++ +L  ++++ 
Sbjct: 429 FNLDYLAYDSEVYGKGKKVAVPEDK---TRLYDHLVAKVSVINDLLPIIKDRLEADEMVE 485

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y +++ P+  V+++MEI GI +D+  L  +S    + L  L+E IY  +G +FN++S +
Sbjct: 486 LYRKIELPLAQVLAKMEIMGISVDRSRLVGLSQSYEEQLDQLQEEIYREAGVEFNINSTQ 545

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  +LF  +    G KTK+G + T   +LE++     PII  IL +RQL+K++STY   
Sbjct: 546 QLSKVLFEDMGLKGGKKTKSGNYSTAQSELEKLQG--VPIIDLILAYRQLAKLQSTYVQG 603

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           + ++I++   +VH+ +    T TGRL+S +PNLQNIPI+T+ G+KIR+AF+ S P   + 
Sbjct: 604 ILDYIHQDG-KVHSRFIQTLTTTGRLSSADPNLQNIPIRTEEGRKIRQAFVPSHPDWVIF 662

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           S+DYSQIELR+LAH++    L + F+ + DIH   AA++F  + + +S   RR AK +NF
Sbjct: 663 SSDYSQIELRVLAHVSGDPHLQEAFKENKDIHTATAAKVFHKDEKDISKDERRQAKAVNF 722

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS + L+  L I R EA  +I +YF  +P + EY++K+    R+ GY +T+F RR
Sbjct: 723 GIVYGISDYGLSQNLSISRQEAKAFIDKYFEIYPKVAEYMDKSVEIAREAGYAKTLFNRR 782

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  ++ +   ++R+  ER A+N+PIQG+AADI + AM+ + ++L++H+L   +LLQ+HD
Sbjct: 783 RYLPDLKAKNYNVRSFAERTAMNSPIQGTAADIIKVAMVEMDQALKEHQLQANLLLQVHD 842

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FEV +E++   + ++   ME A    ++L VPL V+    + W
Sbjct: 843 ELIFEVAKEDLEDLAALVKDVMENA----VSLDVPLIVDSNYGSTW 884



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 160/303 (52%), Gaps = 12/303 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K+  L L DGSS  +RAF+A   L+R   + GL  NA+  F  ML  +L+  +     
Sbjct: 1   MSKQEKLLLFDGSSLAFRAFFAMHDLNRFKNNKGLHTNALYAFHLMLTHVLEKEK----P 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           SH  V +D    TFR   YP+YK  R K P+  + Q+P       AFGI   E+  +EAD
Sbjct: 57  SHALVAWDAGKTTFRTAYYPEYKGGRDKTPQEFVEQMPYFNKLLDAFGIAHYELANYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWG 173
           DII T +    + G  V IIS DKDL+QL      + D  ++   +I     + +    G
Sbjct: 117 DIIGTLSQRGAEAGMDVVIISGDKDLIQLARDQVRV-DINRKGVTNIDSYTPQSIQADQG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I PE+++ ++ L GD+ DN PG+ GIG KTA  L+QE+G++E +  N  ++  KKR+EN+
Sbjct: 176 ISPEQLIDVKGLMGDNSDNYPGVTGIGEKTALKLVQEFGSMEEVYANIDQVSGKKRKENL 235

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           ++  + A LS+KL  +  D P+   L  L  +      L++F + + F + + +      
Sbjct: 236 VKDKDQAFLSKKLARIILDAPVEKSLADLKCQGIQAQDLVNFYREMNFKQFMEKFLANSG 295

Query: 294 CDA 296
            DA
Sbjct: 296 ADA 298


>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 852

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 202/515 (39%), Positives = 318/515 (61%), Gaps = 12/515 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K GH++K   L+L    ++++G  +D+ L+SY+L+  R  H +  ++++ L      +  
Sbjct: 344 KGGHDLKVLSLLLGGMKLTLQGAHDDVELLSYLLNPSRREHALPDLSRERLGLELPALPA 403

Query: 523 SR--KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           +   K   P+ + S  +V       ++   +L   L  +L    L  +   ++ P++ ++
Sbjct: 404 TAEGKKGRPLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALARDMELPLLPIL 463

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++ME  G+++D  + K +S ++     +  ++I+ L+G++FN+ S  QL  +L+ KL+ P
Sbjct: 464 ARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEFNVGSNPQLAQVLYEKLQLP 523

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              K KTG   +T Q++ +     +P+   ILE+R LSK+KSTY D+LP  + K   R+H
Sbjct: 524 ILKKGKTG--PSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLPGLVAK-DGRIH 580

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T Y  A+T TGRL+S +PNLQNIP++T+LG++IRRAF++    +L+SADYSQ+ELR+LAH
Sbjct: 581 TTYHQAATATGRLSSSDPNLQNIPVRTELGREIRRAFVAEAGYQLVSADYSQVELRLLAH 640

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           IA+   L   F++  DIH   AAEIFGV  +KV    RR AKT+NF I YG+SP  L+T+
Sbjct: 641 IAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLSTR 700

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I   EA D I+RYF R+ GI  Y+E T    R+ GYVET+FGRR    ++NS   ++ 
Sbjct: 701 LSISVEEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMFGRRRLMADLNSKNRAVA 760

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAIN PIQG+AAD+ ++AM++V ++L   +LAT MLLQ+HDEL+FE PE E+   
Sbjct: 761 QAAERAAINMPIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDR- 819

Query: 941 SQIIVHSMEKACLPKI-NLRVPLKVNIKVSNNWQE 974
               V ++ + C+  +  L+VPLKV++     W +
Sbjct: 820 ----VKALARQCMSSVATLKVPLKVDVGAGKTWAD 850



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 139/241 (57%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           ++  S K+   +H A+ FD  +   R +I P+YKA+R   PE L+PQ  L+R   +A  +
Sbjct: 1   MVLKSLKDLEPTHIALAFDKDSRAERQKIDPNYKAHREGPPEDLVPQFALIRKVVEALNL 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P +E+ G+EADD+I T    A+ EGF V +++ DKD +Q+V     L+D +K+       
Sbjct: 61  PVLEVPGWEADDVIGTLAARAKAEGFCVQVVTGDKDFIQIVDEDVRLFDPMKDVHTGPAE 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V ++ GI P +M    +L GD++DN+P +PGIG KTAA LLQ++G+++ +L     +K+ 
Sbjct: 121 VKERLGIEPRQMRDYLSLIGDAVDNVPKVPGIGDKTAAALLQQFGDVDTMLARLDEVKKP 180

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K RE I  + E+   +R+LV   T + + + +  LI    +  R       LEF +L+N 
Sbjct: 181 KIREAISSHRESLLRARQLVTFNTQLDLKVTIPELIRRPIDNARARQLFTELEFFRLVNE 240

Query: 288 V 288
           +
Sbjct: 241 L 241


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 208/543 (38%), Positives = 313/543 (57%), Gaps = 50/543 (9%)

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIML 491
           VH ++D  G     KEI   L K                D  VL  R G  +   +D ML
Sbjct: 330 VHRAEDPVGALKDLKEIRGLLAK----------------DLSVLALREGREIPPGDDPML 373

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
           ++Y+LD G ++ +   +A+++                        + +E A   + +  +
Sbjct: 374 LAYLLDPGNTNPE--GVARRY----------------------GGEWKEDAAARALLSER 409

Query: 552 LWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           LW  L P++  E +LL +Y  +++P+  V++ ME TG+++D   L+ +S E++  L  LE
Sbjct: 410 LWQALYPRVAEEERLLWLYREVERPLAQVLAHMEATGVRLDVPYLEALSQEVAFELERLE 469

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIK 669
             ++ L+G  FNL+S  QL  +LF +L  P   KT KTG+  T+A  LE +    +PI+ 
Sbjct: 470 AEVHRLAGHPFNLNSRDQLERVLFDELGLPPIGKTEKTGKRSTSAAVLELLREA-HPIVG 528

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            ILE+R+L K+KSTY D LP  ++ +T R+HT ++  +T TGRL+S +PNLQNIP++T L
Sbjct: 529 RILEYRELMKLKSTYIDPLPRLVHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPL 588

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           GQ+IR+AFI+     L++ DYSQIELR+LAH++    L +VF    DIH   AA +FGV 
Sbjct: 589 GQRIRKAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGVP 648

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
            E V   MRR AKT+NF ++YG+S  RL+ +L IP  EAA +I+RYF  FP +  +I KT
Sbjct: 649 PEGVDGAMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFPKVRAWIAKT 708

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
               R+ GYVET+FGRR +  ++N+   S+R   ER A N P+QG+AAD+ + AM+ +  
Sbjct: 709 LEEGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP 768

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            L    L  ++LLQ+HDELV E P+     A+Q+   +ME    P   L VPL+V + + 
Sbjct: 769 RL--RPLGVRILLQVHDELVLEAPKARAEEAAQLAKETME-GVYP---LSVPLEVEVGMG 822

Query: 970 NNW 972
            +W
Sbjct: 823 EDW 825



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/286 (38%), Positives = 162/286 (56%), Gaps = 9/286 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+   + +I   
Sbjct: 5   FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGEVAI--- 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ GFEADD+
Sbjct: 61  --VVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    AE+EG+ V I+S D+DL QL+S    L    + E +    + +++G+ PE+ V
Sbjct: 119 LATLAKKAEREGYEVRILSADRDLYQLLSDRIHLLHP-EGEVLTPGWLQERYGLSPERWV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DN+PG+PGIG KTA  LL+E+G+LE IL N  ++K ++ RE I    +  
Sbjct: 178 EYRALVGDPSDNLPGVPGIGEKTALKLLKEWGSLEAILKNLDQVKPERVREAIRNNLDKL 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           ++S +L  LRTD+P+ +        D  G  L +FL+ LEF  L++
Sbjct: 238 QMSLELSRLRTDLPLEVDFAKRREPDWEG--LKAFLERLEFGSLLH 281


>gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I
 gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 877

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 200/492 (40%), Positives = 303/492 (61%), Gaps = 17/492 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           D ML  Y++ S    + I++IA+ +    L+   +   K  K ++P D+I    + +H  
Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFDVGHLATDEEIFGKGTKLALPDDEI----LFDHLA 450

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
               V+ +    +  +LI  +  H+   ++ P+ +V+++MEITGI + Q+ L+++ AE  
Sbjct: 451 RKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAENE 510

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + L SL   IYDL+GE+FN++SPKQLG ILF KL+ P G KTKTG   +TA D+ +    
Sbjct: 511 EKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P++  ILE+RQ++K++STY   L   I     ++HT Y    T TGRL+S++PNLQNI
Sbjct: 569 LSPVVAKILEYRQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++ + G+KIR+AF+      L+S+DYSQIELR+LAHI+    L   F++  DIH   A 
Sbjct: 628 PVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAM 687

Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +FG+   E V+   RR+AK +NF ++YGIS F LA  L I R +A +YI+ YF R+PGI
Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E      R  G+VET+  RR    +IN+   ++R   ER AIN+PIQGSAADI + 
Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K+L + +  +K+LLQ+HDE++ +VP EE+     ++  +ME+A    I L VPL
Sbjct: 808 AMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEA----IELAVPL 863

Query: 963 KVNIKVSNNWQE 974
           KV+      W E
Sbjct: 864 KVDDNTGKTWYE 875



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 166/297 (55%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A    L R    +GL  NAI  F  ML  L++  +    
Sbjct: 1   MEDKNRLLLIDGSSVAFRAFFALYNQLDRFKAPNGLHTNAIFAFHTMLSSLMERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  +EA
Sbjct: 57  PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116

Query: 118 DDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+  N   +K  K ++
Sbjct: 177 MGLTPSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKD 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           N++   E A LS++L  + T  P+ I LE  +L++ N   L  F   + F++  +++
Sbjct: 237 NLIADKEMAFLSQQLATINTKAPLEIGLEDTLLKEKNVAELGQFYDEMGFSQFKSKL 293


>gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
 gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
          Length = 876

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 209/528 (39%), Positives = 317/528 (60%), Gaps = 21/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L ++ E+++  KI ++ K   +  HR GI++   E D+ML SY++D  RS  D+ S+   
Sbjct: 358 LVRWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVGL 417

Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  +Y +  I    K +K  IP     +S + EH    +  I  +  +++ +L     + 
Sbjct: 418 YGQNYVKDNITVFGKGKKHHIP----EESILNEHIASVTEAISAVTPIMKSQLEDYNQIE 473

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           + + L+ P+  ++S+ME  GI  D + LK++  EI K L  L  NI++ +GE FN++SPK
Sbjct: 474 LLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSPK 533

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF  L+ P   KTKTG + T    LE++  G++PII +ILE+RQLSK++STY + 
Sbjct: 534 QLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLSKLQSTYVEG 591

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   I+K   R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT K   
Sbjct: 592 LQKVISK-DHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAF--KPTSKDSV 648

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           ++SADYSQIELR+LAHI +   L   F N  DIH   A ++F V  ++V   MRR AK +
Sbjct: 649 ILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAV 708

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  GYVET+  
Sbjct: 709 NFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLH 768

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+   + +++ K   K+LLQ+
Sbjct: 769 RRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQV 828

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE+P+ E+   S+ +   ME+A +    L VPLKV+      W
Sbjct: 829 HDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 15/294 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K++    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKTNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI------KKWGIPPEK 178
           +  A++  F   II+ D+DL QL +    +Y T K+   D++H        K  G+ P++
Sbjct: 117 SRQADEADFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPEFIAEKYQGLVPKQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++ ++E +  +   +  KK +E ++    
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKA 235

Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVAT 290
            A +S+ L  +    PI + LE   L L+D    + I   K LEF +L+  + T
Sbjct: 236 DALMSKDLATINVHSPIEVSLEDTKLTLQDDTAEK-IELFKKLEFKQLLADIDT 288


>gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 882

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 329/537 (61%), Gaps = 18/537 (3%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504
           +K+I+  L+  FE+E   KIG++ K D ++L    I ++    D M++ Y+LDS  SS +
Sbjct: 354 SKDIVEDLRALFEDEKIEKIGYDAKEDVIILLSKKIDLKNLTYDSMIVEYLLDSTASSFE 413

Query: 505 IASIAQKW--LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS-----NVILQLWLLLR 557
             +I  K+   SY  ++ L  +     + K S S +++  +        N   +L  +  
Sbjct: 414 FQNIISKYDLGSYKDEQSLLGK----GVKKKSYSDLEKDELFKYFSFILNGSFKLKEIQM 469

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            KL   +++ +Y  ++ P+++V++ ME+TGI+ +  +L  +   +   + +L  +I+++S
Sbjct: 470 EKLEELEMVDLYREIELPLLEVLAYMELTGIKTEVSVLDDIGKNLDDRIENLTSSIFEIS 529

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           GE+FN++S KQLG+ILF KL+     KTKTG   +TAQD+ +    ++PII+NILE+R+L
Sbjct: 530 GEEFNINSTKQLGEILFDKLRLTVIKKTKTGY--STAQDVLEKLVDESPIIENILEYRKL 587

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           +K+K+TY D L   IN++T R+H+ ++   T TGR++S EPNLQNIPI+++ G+ IR AF
Sbjct: 588 TKLKNTYIDGLKALINEKTGRIHSRFNQTGTSTGRISSTEPNLQNIPIRSEEGRLIRGAF 647

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
           ++     L+  DYSQIELR+LA ++K   + + FE+ +DIH   A+E+F V+ E V+  +
Sbjct: 648 LASEDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHGMDIHTKTASEVFHVDKEDVTDLL 707

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R  AK +NF I+YGIS F L+ QL I R  A +YI  YF  F  + EY++      ++ G
Sbjct: 708 RSRAKAVNFGIVYGISDFGLSRQLGITRELAKEYIDGYFDNFKKVKEYMDYEIETGKKQG 767

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           YV+TIF RR +  E+++   +IR+  ER A+N PIQGSAADI + AM+ V+  ++   L 
Sbjct: 768 YVKTIFNRRRYIPELSAKNFNIRSFGERIALNTPIQGSAADIIKIAMVKVYGEIKKRNLK 827

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +K++L IHDELV +   +E+    +++   ME A    + L VPLKV++    +  E
Sbjct: 828 SKLILTIHDELVVDAVNDELEVVEELMKDIMENA----VKLNVPLKVSLDTGKSMYE 880



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 157/290 (54%), Gaps = 9/290 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N + ++DGSS  +RAFYA PLL  K  G+  NAI GF  M+   + N       +H AV 
Sbjct: 2   NKILIIDGSSLFFRAFYALPLLKNKK-GMYTNAIYGFVMMVENAIDNIN----PTHVAVC 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y DYK  R K P  L+ Q P +    +   I  ++   +EADDI  T 
Sbjct: 57  FDKKGRTFRHELYKDYKGTRKKTPSELMQQWPYIMDILKLMNIKTLDSPVYEADDIAGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           + +A K  F   +++ DKD  QLV   + +  T K      ++  +++  ++G+ PE+ +
Sbjct: 117 SKLAAKNDFESYLLTGDKDYFQLVDDKSTVLLTKKGITDLLEVTPKYLYDEYGLTPEEFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GDS DNIPG+PG+G KT   L++EY N+EN+  N   +  KK  EN+ E    A
Sbjct: 177 DLKALMGDSSDNIPGVPGVGEKTGIKLIKEYKNIENLYQNLDEVSGKKLNENLTENKAQA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            +S+KL  + T VP+   L+    E+ N   L      L+F  L+ R+ T
Sbjct: 237 FMSKKLGTIVTTVPLDYKLDDFKKEEYNYEELYKLYSELDFKTLLARLDT 286


>gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
          Length = 877

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 202/492 (41%), Positives = 301/492 (61%), Gaps = 17/492 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543
           D ML  Y++ S    + I++IA+ + S    T +EI  K  K ++P     D+ + EH  
Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFNSGHLATDEEIFGKGTKIALP----DDAVLFEHLA 450

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
               V+      +  +L+  +  H+   ++ P+ +V+++MEITGI + Q+ L+++ AE  
Sbjct: 451 RKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENE 510

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + L SL   IYDL+GE+FN++SPKQLG ILF KL+ P G KTKTG   +TA D+ +    
Sbjct: 511 EKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P++  ILE+RQ++K++STY   L   I     ++HT Y    T TGRL+S++PNLQNI
Sbjct: 569 LSPVVAKILEYRQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++ + G+KIR+AF+      L+S+DYSQIELR+LAHI+    L   F++  DIH   A 
Sbjct: 628 PVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAM 687

Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +FG+   E V+   RR+AK +NF ++YGIS F LA  L I R +A +YI+ YF R+PGI
Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E      R  G+VET+  RR    +IN+   ++R   ER AIN+PIQGSAADI + 
Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K+L      +K+LLQ+HDE++ +VP EE+     ++  +ME+A    I L VPL
Sbjct: 808 AMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKALVKQTMEEA----IELAVPL 863

Query: 963 KVNIKVSNNWQE 974
           KV+      W E
Sbjct: 864 KVDENTGKTWYE 875



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ ++ L L+DGSS  +RAF+A   L  + D      GL  NAI  F  ML  L++  R 
Sbjct: 1   MENKDRLLLIDGSSVAFRAFFA---LYNQIDRFKAPNGLHTNAIFAFHTMLSSLME--RI 55

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           E   +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  
Sbjct: 56  EP--THVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELAN 113

Query: 115 FEADDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++
Sbjct: 114 YEADDIIGTLDKMAEAPIVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+  N   +K  K
Sbjct: 174 LEKMGLTPAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVDSLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   E A LS++L  + T  PI I L+  +L+      L  F   + F +  +++
Sbjct: 234 MKENLIADKEMAFLSQQLATINTKAPIEIGLDDTLLKGKKVDELSQFYDEMGFAQFKSKL 293


>gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909]
          Length = 876

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 209/528 (39%), Positives = 317/528 (60%), Gaps = 21/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L ++ E+++  KI ++ K   +  HR GI++   E D+ML SY++D  RS  D+ S+   
Sbjct: 358 LVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVSL 417

Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  +Y +  I    K +K  IP     +S + EH    +  I  +  +++ +L     + 
Sbjct: 418 YGQNYVKDNITVFGKGKKHHIP----EESILNEHIASVTEAISAVTPIMKSQLEDYNQIE 473

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           + + L+ P+  ++S+ME  GI  D + LK++  EI K L  L  NI++ +GE FN++SPK
Sbjct: 474 LLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSPK 533

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF  L+ P   KTKTG + T    LE++  G++PII +ILE+RQLSK++STY + 
Sbjct: 534 QLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLSKLQSTYVEG 591

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   I+K   R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT K   
Sbjct: 592 LQKVISK-DHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAF--KPTSKDSV 648

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           ++SADYSQIELR+LAHI +   L   F N  DIH   A ++F V  ++V   MRR AK +
Sbjct: 649 ILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAV 708

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  GYVET+  
Sbjct: 709 NFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLH 768

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+   + +++ K   K+LLQ+
Sbjct: 769 RRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQV 828

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE+P+ E+   S+ +   ME+A +    L VPLKV+      W
Sbjct: 829 HDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 162/295 (54%), Gaps = 15/295 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K++    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI------KKWGIPPEK 178
           +  A++  F   II+ D+DL QL +    +Y T K+   D++H        K  G+ P++
Sbjct: 117 SRQADEADFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPEFIAEKYQGLVPKQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++ ++E +  +   +  KK +E ++   +
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 235

Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A +S+ L  +    P+ + LE   L L+D    + I   K LEF +L+  + T+
Sbjct: 236 DALMSKDLATINVHSPVEVSLEDTKLTLQDDTAEK-IELFKKLEFKQLLADIDTS 289


>gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
 gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
          Length = 877

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 202/492 (41%), Positives = 301/492 (61%), Gaps = 17/492 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543
           D ML  Y++ S    + I++IA+ + S    T +EI  K  K ++P     D+ + EH  
Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFNSGHLATDEEIFGKGTKIALP----DDAVLFEHLA 450

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
               V+      +  +L+  +  H+   ++ P+ +V+++MEITGI + Q+ L+++ AE  
Sbjct: 451 RKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENE 510

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + L SL   IYDL+GE+FN++SPKQLG ILF KL+ P G KTKTG   +TA D+ +    
Sbjct: 511 EKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P++  ILE+RQ++K++STY   L   I     ++HT Y    T TGRL+S++PNLQNI
Sbjct: 569 LSPVVAKILEYRQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++ + G+KIR+AF+      L+S+DYSQIELR+LAHI+    L   F++  DIH   A 
Sbjct: 628 PVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAM 687

Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +FG+   E V+   RR+AK +NF ++YGIS F LA  L I R +A +YI+ YF R+PGI
Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E      R  G+VET+  RR    +IN+   ++R   ER AIN+PIQGSAADI + 
Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K+L      +K+LLQ+HDE++ +VP EE+     ++  +ME+A    I L VPL
Sbjct: 808 AMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKALVKQTMEEA----IELAVPL 863

Query: 963 KVNIKVSNNWQE 974
           KV+      W E
Sbjct: 864 KVDENTGKTWYE 875



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 164/297 (55%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+  N L L+DGSS  +RAF+A    ++R    +GL  NAI  F  ML  L++  R E  
Sbjct: 1   MENNNRLLLIDGSSVAFRAFFALYNQIARFKAPNGLHTNAIFAFHTMLSSLME--RIEP- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  +EA
Sbjct: 58  -THVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKMAEAPNVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+  N   +K  K +E
Sbjct: 177 MGLTPAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVDSLKASKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           N++   E A LS++L  +    PI I L+  +L+D     L  F   + F +  +++
Sbjct: 237 NLIADKEMAFLSQQLATINIKAPIEIGLDDTLLKDKKIDELSQFYDEMGFAQFKSKL 293


>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
 gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
          Length = 882

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 195/549 (35%), Positives = 332/549 (60%), Gaps = 11/549 (2%)

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489
           L V  S D      + ++ L  +K    N    K G+++K D ++L  Y I +   + DI
Sbjct: 338 LYVFLSLDGNEIYYVNEDELPQIKTLLSNPEIKKHGYDLKEDYILLKPYEIELNSMDFDI 397

Query: 490 MLMSYVLDSGRS-SHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            +  Y++DS  S S++ ++IA K+L+    +++++L     +   D+I   ++  +  + 
Sbjct: 398 TIAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLLGKGAKAKKFDEIEFDELSAYIGDI 457

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
            N +  ++L +  KL   ++  ++  ++ P+++V+  ME  G+++D+D L ++  + +  
Sbjct: 458 LNTVNGVYLKMEEKLKETEMDGLFYHVEMPLVEVLGSMEYIGMKVDKDQLNELKEKFTTI 517

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           +  LE  I++L+GE FN++SPKQLG +LF KL  P   KTKTG + T A+ LE++    +
Sbjct: 518 INELENEIFELAGEPFNINSPKQLGVVLFEKLGLPVIKKTKTG-YSTNAEVLEKLR-DKH 575

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            II  I E+RQ+ K+ STY + L   IN +T R+H+ ++   T TGR++S EPN+QNIP+
Sbjct: 576 EIIDKITEYRQIVKLNSTYVEGLLKIINPKTGRIHSSFNQTITTTGRISSTEPNMQNIPV 635

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           KT++G+ IR+ F++    KL+ ADYSQ+ELR+LAH++    +   F++  DIH   A++I
Sbjct: 636 KTEMGRDIRKVFVADENCKLVDADYSQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQI 695

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F V+I+ V+ + R  AK INF IIYG + F L+  L IP + A  YI  YF+++P I E+
Sbjct: 696 FDVDIKDVTSKQRIEAKAINFGIIYGKTDFGLSQDLNIPVATAKAYIDSYFNKYPKIKEF 755

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +++      + GY  TI  RR +  EI +    +RN  +R A+NAPIQGSAADI + AM+
Sbjct: 756 MDEAVESATETGYATTILNRRRYIPEIKASNFIVRNQGKRFAMNAPIQGSAADIIKVAMV 815

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +V+  L+++ + +K++LQ+HDEL+ E  +EE+  A +I+   ME A     ++ V L V+
Sbjct: 816 NVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVREEMENAQ----SMDVKLDVD 871

Query: 966 IKVSNNWQE 974
           +   ++W E
Sbjct: 872 LNTGDSWYE 880



 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 170/289 (58%), Gaps = 10/289 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L ++DG+S I RAFYA P +S   +GL  NAI GF  M++K++++ +     +H +V
Sbjct: 2   EKRLIIIDGNSIINRAFYALPDMSN-SEGLKTNAIFGFVRMMFKIIEDYQ----PTHMSV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++ Y DYKA R K+P+ L  QL  ++     F I  +E++G+EADD+I T
Sbjct: 57  AFDKKAPTFRHKQYADYKAGRKKMPDELAQQLQPLKDLLDKFNINRLELEGYEADDLIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              + E+  F V I++ DKD +QL S  T    T K     E+ + + V++++ + P + 
Sbjct: 117 VARLGEENDFKVYIVTGDKDAIQLASHKTTTLITKKGVGEVEEYNYDSVLERYEMTPTQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PG+G KT   LL++Y  +EN++ +   +K   +++ I E  E 
Sbjct: 177 IDLKGLMGDKSDNIPGVPGVGEKTGIKLLKQYSTIENLIEHTDELKGSIKKK-IEENKEL 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           A +S++L  + T+VPI + LE L   D N   ++   K   FT LI ++
Sbjct: 236 ALMSKELATIITNVPIEVKLEDLAYGDYNKDDVVEKFKEFGFTSLITKL 284


>gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7]
          Length = 877

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 190/494 (38%), Positives = 304/494 (61%), Gaps = 12/494 (2%)

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEH 541
           G  D  + +Y+++  + S+    IAQ +L  T   R + LK    +   +K  +S    H
Sbjct: 390 GIFDAAIAAYLINPLKDSYTYDGIAQDFLGMTVPSRADWLKKMTLTEASEKEKESF--GH 447

Query: 542 AIENSNVI-LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            +  S +I +Q +  L+ +L    +  +++ ++ P++  +  ME  GI +++D L +  +
Sbjct: 448 YLAYSAMIPVQAYSTLKKRLEETGMDRLFDEIEMPLVYALYDMEKAGIAVEKDALAEYGS 507

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            ++  +  LE+NIY+L+GE FN++SPKQLG ILF KL  P   KTKTG + T+A  LE++
Sbjct: 508 RLTGRIDELEKNIYELAGESFNINSPKQLGIILFEKLGLPFAKKTKTG-YSTSADILEKL 566

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D PI+  ILE+RQL+K+KSTYAD L  +I    QR+H  ++   T TGR++S EPNL
Sbjct: 567 RTYD-PIVGQILEYRQLTKLKSTYADGLAGYIRPDDQRIHGKFNQTITATGRISSTEPNL 625

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++ +LG+ IR+ F+       ++ADYSQIELR+LAH+A    L Q ++ + DIHRM
Sbjct: 626 QNIPVRMELGRLIRKVFVPKEDCIFVNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRM 685

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+++F    ++V+P  R +AK +NF I+YGIS F L+  L I + EA +YI++YF  +P
Sbjct: 686 TASQVFHTPFDEVTPAQRSNAKAVNFGIVYGISSFGLSQDLSITKKEAENYIQQYFRTYP 745

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GI  +++++    ++ GY  T+FGRR    E+ S     R+  ER A+N+PIQG+AADI 
Sbjct: 746 GIKAFLDRSVEDAKEKGYAVTLFGRRRPVPELLSSNFMQRSFGERIAMNSPIQGTAADII 805

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ V++ L+   + ++++LQIHDEL+ E   +E+     I+   ME A      L V
Sbjct: 806 KIAMVRVNRRLKRQHMKSRLILQIHDELLIEAVLDEVDAVKAILKEEMEHAA----TLAV 861

Query: 961 PLKVNIKVSNNWQE 974
           PL++++   +NW E
Sbjct: 862 PLEIDMHTGHNWYE 875



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 165/288 (57%), Gaps = 13/288 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RA+Y  PLLS   +GL  NA+ GF N+++K+L   +    A + AV FD
Sbjct: 4   VILIDGHSILNRAYYGIPLLSNA-EGLHTNAVYGFLNIMFKILDEEK----ADYLAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E++  YK  R  +PE L  Q+P+++    A  IP +E  G+EADDI+ T   
Sbjct: 59  VHAPTFRHEMFEAYKGTRKPMPEELREQVPVIKEVLHAMQIPTLEHAGYEADDILGTLGK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
             E  G+AV+IIS D+DL+QL +       P T +  T  E+    + V +K+ + P + 
Sbjct: 119 AYEAAGYAVSIISGDRDLLQLATDKIKIRIPKTKMSGTEIEDYYAAD-VFEKYQVTPTEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PGIG KTA+ ++  + ++E    +A+ +K KK  EN++ Y E 
Sbjct: 178 IDMKALMGDTSDNIPGVPGIGEKTASKIISTWHSIEEAHAHAAELKPKKASENLVTYYEQ 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           A+ S+ L  ++TD  +   LE   +         + LK LE   ++ R
Sbjct: 238 AQFSKVLATIKTDCVLDFKLEDAAIGQMMNDASYALLKRLELKNILKR 285


>gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048]
 gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048]
          Length = 891

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/528 (37%), Positives = 318/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K++  N    K   + K   + L   G+ ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 372 FKEWLANGEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 431

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 487

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D + L+ +  E++  L  +E+ IY L+G +FN++SPK
Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 547

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 605

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 606 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F + +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 664 MYAADYSQIELRVLAHIANDPGLVEAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 723

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY+++     +Q GYV T+  
Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLN 783

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 843

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 844 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 887



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S++L  + TD PIT+ ++ +  +      LI   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKELATIITDAPITVHVDDMEYKGYEPSDLIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273]
 gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273]
          Length = 891

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/528 (37%), Positives = 317/528 (60%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K +  N    K   + K   + L   G+ ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 372 FKAWLANAEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRAVAKM 431

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P   +    V EH     +V+  +      +L   +   
Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPELDV----VAEHVARKVHVLYDVKQTFIEELKKNEQYE 487

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D + L+ +  E++  L  +E+ IY L+G +FN++SPK
Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 547

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEG 605

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 606 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 664 MYAADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 723

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY+++     +Q GYV T+  
Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLN 783

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+
Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 843

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 844 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 887



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGAYVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    E 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S++L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKELATIITDAPITVHVDDMAYKGYEPIDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
 gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
          Length = 876

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 21/529 (3%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
           +L ++ E+++  KI ++ K   +  HR GI++   E D+ML SY++D  RS  D+ S+  
Sbjct: 357 HLVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVS 416

Query: 511 KW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +  +Y +  I    K +K  IP + I    + EH    +  I  +   ++ +L     +
Sbjct: 417 LYGQNYVKDNITIFGKGKKHHIPEEPI----LNEHIASVTEAIAAVTPTMKSQLEDYNQI 472

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            + + L+ P+  ++S+ME  GI  D + LK++  EI K L  L  NI++ +GE FN++SP
Sbjct: 473 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 532

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG +LF  L+ P   KTKTG + T    LE++  G++PII +ILE+RQL+K++STY +
Sbjct: 533 KQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLAKLQSTYVE 590

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L   I+K   R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT K  
Sbjct: 591 GLQKVISK-DHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSKDS 647

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            ++SADYSQIELR+LAHI +   L   F N  DIH   A ++F V  ++V   MRR AK 
Sbjct: 648 VILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKA 707

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  GYVET+ 
Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLL 767

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+   + +++ K   K+LLQ
Sbjct: 768 HRRRYIPDITSRNVNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQ 827

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE+P+ E+   S+ +   ME+A +    L VPLKV+      W
Sbjct: 828 VHDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 164/295 (55%), Gaps = 15/295 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K++    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A++E F   II+ D+DL QL +    +Y T K+   D++H   K+      G+ P++
Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPKFIAEKYNGLVPKQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++ ++E +  +   +  KK +E ++   +
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 235

Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A +S+ L  +    PI + LE   L L+D    + I   K LEF +L+  + T+
Sbjct: 236 DALMSKDLATINVHSPIEVSLEDTKLTLQDDTTEK-IELFKKLEFKQLLADIDTS 289


>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 876

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 210/528 (39%), Positives = 308/528 (58%), Gaps = 21/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L ++ EN+   K  ++ K      HR  I ++    DIML SY+LD  RS  D+ S+   
Sbjct: 358 LVEWLENDQTRKRVYDAKKTYAEAHRLNIDIKNVSFDIMLASYILDPSRSIDDVYSVVHN 417

Query: 512 W-LSYTRKEI---LKSRKSSIPIDKISDSQVQE--HAIENSNVILQLWLLLRPKLIVEKL 565
           +  +Y  +E+    K RK  IP D++ D+ +     AI  S  I+        +L     
Sbjct: 418 YGQNYVAEEVNIYGKGRKRQIPEDEVLDTYIASILDAISESTPIM------YDQLEEFNQ 471

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
           L ++E L+ P+  ++ +ME  GI  D D LK++  EI   L +L   I+D +GE FN++S
Sbjct: 472 LDLFESLELPLARILGEMEELGIYTDVDELKEMEKEIQGKLDTLITRIHDAAGEDFNINS 531

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG +LF  LK P   KTKTG + T    LEQ+  G++PII +ILE+RQLSK++STY 
Sbjct: 532 PKQLGVVLFENLKLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDDILEYRQLSKLQSTYI 589

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
           + L   I +   R+HT ++     TGRL+S++PNLQNIP++ + G++IR+AF  + P   
Sbjct: 590 EGLQKVI-QNDHRIHTHFNQTLAQTGRLSSVDPNLQNIPVRLEEGRRIRKAFKPAEPGNV 648

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           ++SADYSQIELR+LAHI +   + + F    DIH   A ++FGV  ++V   MRR AK +
Sbjct: 649 ILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMRRQAKAV 708

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  A  +I  Y   FPG+ +Y+       +  GYVET+  
Sbjct: 709 NFGIVYGISDYGLSQSLGITRKAAKQFIDDYLDSFPGVKQYMSDIVKDAKAKGYVETLLH 768

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I S   + R+  ER A+N PIQGSAADI + AM++  K +++      +LLQ+
Sbjct: 769 RRRYIPDITSRNFNRRSFAERTAMNTPIQGSAADIIKLAMVNFDKEIKNKDFHAHLLLQV 828

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE+PEEE+   S  I   M+ A    I+L VPL+V+      W
Sbjct: 829 HDELIFELPEEEVEAFSAFIEDIMDNA----IDLDVPLQVDTNYGPTW 872



 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 165/289 (57%), Gaps = 13/289 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RAFYA PLL+ +  G+  NA+ GF  +L K+    +KE   ++F V FD
Sbjct: 4   LVLIDGNSLSFRAFYALPLLTNRA-GIHTNAVYGFAMLLEKI----KKEEQPTNFLVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E + DYK  R K P  L  Q PL+R    A+ I   E++ +EADDII T + 
Sbjct: 59  AGKTTFRHETFGDYKGGRQKTPPELSEQFPLIRQLLDAYQIKHYELENYEADDIIGTLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEKMV 180
            A+K G    I++ D+DL QL S    +Y T K+   D++H   ++      G+ P +++
Sbjct: 119 EADKAGIQTIIVTGDRDLTQLASDNVTIYYT-KKGVTDVDHYTPEFIAEKYNGLKPSQII 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPGI G+G KTA  LL ++  +EN+  +   +  KK +E +    E A
Sbjct: 178 DMKGLMGDTSDNIPGIAGVGEKTAIKLLNQFETVENLYEHIDEVSGKKLKEKLENGQEDA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRV 288
            +S++L  ++ D PI + L+   L +D +    I   K L+F +++N++
Sbjct: 238 FMSKQLATIKRDSPIEVSLKDTKLPDDVDQTAKIDLFKELDFKQMLNQI 286


>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
          Length = 833

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 196/498 (39%), Positives = 304/498 (61%), Gaps = 33/498 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+++   +D +L++Y+LD   ++ +   +A+++                        +
Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTNPE--GVARRY----------------------GGE 399

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A E + +  +L+  L P+L  EKLL +Y+ +++P+  V++ ME  G+++D  LL+ 
Sbjct: 400 FTEDAAERALLSERLFQTLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656
           +S E+ K +  LE  ++ L+G  FNL+S  QL  +LF +L   P G   KTG+ ++TAQ 
Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPFNLNSRDQLEKVLFDELGLTPVGRTEKTGK-RSTAQG 517

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +   G +PI++ IL++R+LSK+KSTY D LP  ++ RT R+HT ++  +T TGRL+S 
Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IR+AF++     L++ADYSQIELR+LAH++    L +VF    D
Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA +FG++   V P+MRR AKT+NF ++YG+S  RL+ +L I   EA  +I+RYF
Sbjct: 638 IHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IE+T    R  GYVET+FGRR +  ++ S   S+R   ER A N P+QG+A
Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   L+   L   +LLQ+HDELV EVPE+    A  ++   ME A     
Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENAY---- 811

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL+V + V  +W E
Sbjct: 812 PLDVPLEVEVGVGRDWLE 829



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/284 (38%), Positives = 155/284 (54%), Gaps = 12/284 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDG    YR FYA  L + +  G PV  + GF   L K L+   +  +     V+
Sbjct: 12  KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++ T 
Sbjct: 65  FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              AE+EG  V I++ D+D  QL+S   +  L D       D++   +K+G+PPE+ V  
Sbjct: 125 AKKAEREGMEVCILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +ALTGD  DNIPG+ GIG KTA  LL E+G++EN+L N  R+K    R  I  + E  RL
Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLRL 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           S  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++
Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLH 285


>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
          Length = 880

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 211/555 (38%), Positives = 326/555 (58%), Gaps = 41/555 (7%)

Query: 438 DSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMS 493
           + TG   + KEI       KK+ E+E   K   + K   + L   GI ++G E D +L +
Sbjct: 343 NETGHYYIPKEIAVQSEIFKKWAEDESQKKWVFDSKRSVVALRWQGIELKGAEFDALLAA 402

Query: 494 YVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           Y+++   +  D+AS+A+ +    +S       K  K ++P     ++++  H +  +  +
Sbjct: 403 YIINPANTYDDVASVAKDYGLHIVSSDEAVYGKGAKRAVP----GENELAMHLVRKAAAV 458

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVV---------SQMEITGIQIDQDLLKQVSA 600
             L          EKLL   E  D+  +             +ME  G+++D   L+++  
Sbjct: 459 DSLR---------EKLLQELENNDQLELYEELELPLALILGEMESIGVKVDVGRLERMGE 509

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+   L   EE I++++GE FN++SPKQLG ILF KL  P   KTKTG + T+A  LE++
Sbjct: 510 ELGARLKEYEEKIHEIAGEPFNINSPKQLGVILFEKLGLPVVKKTKTG-YSTSADVLEKL 568

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               + I+  IL++RQ+ K++STY + L   I K + +VHT ++ A T TGRL+S +PNL
Sbjct: 569 -ADQHDIVSYILQYRQIGKLQSTYIEGLLKVIRKDSHKVHTRFNQALTQTGRLSSTDPNL 627

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           QNIPI+ + G+KIR+AF+  P++K   + +ADYSQIELR+LAHI+K   L + F N +D+
Sbjct: 628 QNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDV 685

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++F V  ++V+P MRR AK +NF I+YGIS + L+  L I R EAA +I+RY  
Sbjct: 686 HTKTAMDVFHVAQDEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYLE 745

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            F G+  Y+E++    +Q GYV T+  RR +  E+ S   ++R+  ER A+N PIQGSAA
Sbjct: 746 SFKGVKVYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAA 805

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI ++AMI +   L++ +L  K+LLQ+HDEL+FE P+EEI    +++   ME A    +N
Sbjct: 806 DIIKKAMIDMAAKLKEKQLKAKLLLQVHDELIFEAPKEEIKLLEKLVPEVMEHA----LN 861

Query: 958 LRVPLKVNIKVSNNW 972
           L VPLKV+     +W
Sbjct: 862 LDVPLKVDFASGPSW 876



 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/294 (39%), Positives = 172/294 (58%), Gaps = 11/294 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GIHTNAVYGFTMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I T    AEK+GF V I S DKDL QL +  T +  T ++   D+E     HV +K+G+ 
Sbjct: 116 IGTLAKSAEKDGFEVKIFSGDKDLTQLATEHTTVAIT-RKGITDVEFYTPQHVEEKYGLT 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  KK +E + E
Sbjct: 175 PEQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHSVEKLLESIGEVSGKKLKEKLEE 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           + + A +S++L  + TD PI I L  L  +  N  ++IS  K L F  L+ R+ 
Sbjct: 235 FKDQAVMSKELATIMTDAPIDISLAELDYDGFNREQVISIFKDLGFNTLLERLG 288


>gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160]
 gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1]
 gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408]
          Length = 880

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 208/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIKIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 AT 290
            T
Sbjct: 294 GT 295


>gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
 gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
          Length = 880

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 217/605 (35%), Positives = 343/605 (56%), Gaps = 37/605 (6%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE--TIFIDLSV 433
           D +++  K++  G  +FK + +     HSK   +AI T   KD  ++ ++    FID   
Sbjct: 305 DYEKFADKIKAKGEVTFKCLYEGESYIHSKVYKLAIKT---KDSPAYILDPDQAFID--- 358

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLM 492
                               K  FE+E  LK   +IK D ++L++ GI +   F+D+MLM
Sbjct: 359 ------------------SFKDVFEDEKILKNSFDIKEDIVLLNKLGIDLNLPFDDLMLM 400

Query: 493 SYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            Y++D  RSS+D+ +++Q +L Y   +  ++L   K S+   ++   ++  +     N I
Sbjct: 401 HYLIDPSRSSYDLKTLSQAYLDYEVISEVDLLGKGKKSLSYGELDYDKLSNYLASELNAI 460

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
                 L   L   K+  +YE ++  +  V++ MEI G   D+ +L  +  +I+K+L  L
Sbjct: 461 EDAKAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGFVTDRKVLLDLKEDINKDLEKL 520

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
              IY+L+G +FN++S KQLG++LF  L  P   KTKTG + T A  LE++    + II 
Sbjct: 521 TSEIYELAGSEFNINSTKQLGEVLFKDLDLPVIKKTKTG-FSTDASVLEKLR-DKHQIIP 578

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            I ++R+L K++STY + L   I+    R+ + +      TGRL+S +PNLQN+PIKTD 
Sbjct: 579 KIEKYRELFKLQSTYIEGLEKAIDD-DGRIRSTFRQNIAATGRLSSQDPNLQNLPIKTDE 637

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           G+ IR+AF +   K LI ADYSQIELRILA ++    + + F N  DIH   A+++F   
Sbjct: 638 GRLIRKAFKAGQGKILIDADYSQIELRILASLSGDEHMIEAFRNGEDIHAKTASKVFHTP 697

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +++V+ + R  AK +NF IIYGIS + L+  L IPR EA  YI  Y   +P I  Y++  
Sbjct: 698 LDEVTKRQRSDAKAVNFGIIYGISDYGLSQNLNIPRKEAKAYIDNYMASYPSIKAYMDSI 757

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
               +++G+VET+F RR +  EINS   ++R+  +R A+N PIQG+AADI + AMI   K
Sbjct: 758 VEKAKEDGFVETLFNRRRYVPEINSKNFNVRSFGQRVALNTPIQGTAADIIKIAMIETDK 817

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
           +L+   L  K++LQIHDE++ E   E+  +A +I+ +SM++A     NL+VPL V+I   
Sbjct: 818 NLKKAGLDAKIVLQIHDEIILEASLEDKDSAMEILRNSMQEAA----NLKVPLIVDIDTG 873

Query: 970 NNWQE 974
            +  E
Sbjct: 874 ESMYE 878



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 154/283 (54%), Gaps = 9/283 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS I+RAF+A P L+  +DG+  N + GF  M     +N+       +  V FD
Sbjct: 6   LMLIDGSSLIFRAFFALPKLTN-NDGVMTNGVYGFLTMY----KNAFDRYKPDYILVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR++ + DYKA R K+P  L  Q  +++    +  +   ++ GFEADDI+ TY  
Sbjct: 61  RASKTFRHKEFKDYKATRNKMPSELSYQFGILKDILDSLNVKYTDLDGFEADDIVGTYAK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI----KKWGIPPEKMVCL 182
           +A++ G+   +I+ D+D +QLV     +  T K      E+ +    +++G+ P++++ +
Sbjct: 121 MAQEAGYDSVLITGDRDYLQLVDEKIVVNLTKKGVSETKEYTLATIKEEFGLTPKQLIDV 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+ GIG K A   +Q+YG++E +  +   I  KK +E +++    A +
Sbjct: 181 KGLEGDKSDNIPGVEGIGPKKAIEFIQKYGSIEGLYEHIDEISGKKTKERLIDSEPIAYM 240

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           S+K+  + T  P+   LE L + + + P L        F K I
Sbjct: 241 SKKIGTIVTSAPVEYELEELKVAEPDLPSLREKYSKYNFNKFI 283


>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
 gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I
 gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
          Length = 877

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 202/492 (41%), Positives = 301/492 (61%), Gaps = 17/492 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543
           D ML  Y++ S    + I++IA+ + S    T +EI  K  K ++P     D+ + EH  
Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFNSGHLATDEEIFGKGTKIALP----DDAVLFEHLA 450

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
               V+      +  +L+  +  H+   ++ P+ +V+++MEITGI + Q+ L+++ AE  
Sbjct: 451 RKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENE 510

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + L SL   IYDL+GE+FN++SPKQLG ILF KL+ P G KTKTG   +TA D+ +    
Sbjct: 511 EKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P++  ILE+RQ++K++STY   L   I     ++HT Y    T TGRL+S++PNLQNI
Sbjct: 569 LSPVVAKILEYRQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++ + G+KIR+AF+      L+S+DYSQIELR+LAHI+    L   F++  DIH   A 
Sbjct: 628 PVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAM 687

Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +FG+   E V+   RR+AK +NF ++YGIS F LA  L I R +A +YI+ YF R+PGI
Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E      R  G+VET+  RR    +IN+   ++R   ER AIN+PIQGSAADI + 
Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K+L      +K+LLQ+HDE++ +VP EE+     ++  +ME+A    I L VPL
Sbjct: 808 AMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKVLVKQTMEEA----IELAVPL 863

Query: 963 KVNIKVSNNWQE 974
           KV+      W E
Sbjct: 864 KVDENTGKTWYE 875



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ ++ L L+DGSS  +RAF+A   L  + D      GL  NAI  F  ML  L++  R 
Sbjct: 1   MENKDRLLLIDGSSVAFRAFFA---LYNQIDRFKAPNGLHTNAIFAFHTMLSSLME--RI 55

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           E   +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  
Sbjct: 56  EP--THVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELAN 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++
Sbjct: 114 YEADDIIGTLDKMAEAPNVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+  N   +K  K
Sbjct: 174 LEKMGLTPAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVDSLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   E A LS++L  + T  PI I L+  +L+      L  F   + F +  +++
Sbjct: 234 MKENLIADKEMAFLSQQLATINTKAPIEIGLDDTLLKGKKVDELSQFYDEMGFAQFKSKL 293


>gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342]
 gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342]
          Length = 891

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L   F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTEEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
 gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
          Length = 834

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 178/426 (41%), Positives = 275/426 (64%), Gaps = 9/426 (2%)

Query: 551 QLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           +LW +L  +L  E+ L  +Y  +++P+  V+++ME  G+++D   L+ +SAE+ + + ++
Sbjct: 414 ELWRILGERLAGEEALWWLYREVERPLAGVLAEMEHAGVRVDVAYLEALSAELGREIAAI 473

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           E  ++ L+G  FNL+S  QL  IL+ +L   P+    KTG+  T+A  LE +  G +PI+
Sbjct: 474 EAEVHRLAGRAFNLNSRDQLEVILYDELGLTPTRRTQKTGRRSTSAAALEAL-VGAHPIV 532

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           + IL +R+LSK+K TY D LP  ++  T R+HT Y    T TGRL+S +PNLQNIP++T+
Sbjct: 533 ERILAYRELSKLKGTYLDPLPRLVHPATGRIHTRYHQTGTATGRLSSSDPNLQNIPVRTE 592

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           +G++IRRAF++ P   L++ADYSQIELR+LAH++    L +VF+   DIH   A+ +FGV
Sbjct: 593 VGRRIRRAFVAEPGYVLVAADYSQIELRVLAHLSGDENLKRVFQERRDIHTQTASWMFGV 652

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
             E V P  RR AKT+NF ++YG+SP RL+ +L I  +EA  +I+RYF  +P +  YIE+
Sbjct: 653 PPEAVDPFRRRAAKTVNFGVLYGMSPHRLSRELGIEYAEAERFIQRYFESYPRVQAYIER 712

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
           T    R+ GYVET+FGRR +  +I S   ++R   ER A N P+QG+AAD+ + AM+ + 
Sbjct: 713 TLEQAREKGYVETLFGRRRYIPDIRSRNRNVREAAERMAFNMPVQGTAADLMKLAMVKL- 771

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            + E   L  +++LQ+HDELV E P+E     ++++   ME A      L VPL+V + +
Sbjct: 772 -APEIRSLGARLILQVHDELVLEAPQERAEAVARVVREVMEGAW----ALDVPLEVEVGI 826

Query: 969 SNNWQE 974
             NW E
Sbjct: 827 GENWLE 832



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 152/288 (52%), Gaps = 7/288 (2%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   + +VDG    YR ++A   L+    G PV A+ GF   L KLL+      I    
Sbjct: 9   HRPERILIVDGHHLAYRNYFALGELTTSR-GEPVQAVYGFARTLLKLLKEDGDCVI---- 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD P  +FR+E +  YKA R   PE   PQL  ++      G+   E+ G+EADD+I
Sbjct: 64  -VVFDAPQPSFRHEQFAAYKAQRAPTPEDFKPQLEKIKQLVDLLGLARFELAGYEADDVI 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            +    AE EG+ V I+++D+D  QL+S    +     EE +  E V +K+G+   + V 
Sbjct: 123 GSLAKKAEAEGYEVRIVTSDRDSYQLLSDKVRVLKPDGEE-VTPETVREKYGVTVAQWVD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD+ DNIPG+ GIG KTAA LL E+G+LEN+  + + +     R+ +    E A 
Sbjct: 182 FRALTGDASDNIPGVRGIGAKTAAKLLAEWGSLENLYAHLAEVTPPSVRKKLEAGREKAA 241

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           LSR L  + TD+ I +          +   L +FL+ALEF  ++  + 
Sbjct: 242 LSRALSEIHTDLAIEVDFAACHRRPVDREALRAFLEALEFGSILRELG 289


>gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150]
          Length = 880

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRAKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----DQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADG-KIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IKLAVPLVADENAGQTWYE 878



 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 165/302 (54%), Gaps = 19/302 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LE +  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLEKLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 AT 290
            T
Sbjct: 294 GT 295


>gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 891

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L   F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302]
          Length = 882

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 209/515 (40%), Positives = 302/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521
           ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        
Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K  +P D   +     H       I  L   L  +L  +    ++ +++ P+  ++ 
Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P 
Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T    LEQ+     PI+ +IL +RQ++KI+STY + L   I +   ++HT
Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      LI S+DYSQIELR+LAH
Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L + F    DIH   A  +FGV   E V+  MRR AK +NF I+YGIS + L+ 
Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVYGISDYGLSQ 729

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++
Sbjct: 730 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+  
Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +Q++   ME A    ++L VPL  +      W E
Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880



 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG+S  +RAF+A    L R    +GL  NAI  F NM   ++Q    + + +H  V
Sbjct: 6   LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
                +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ G+ P++
Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E +  N   +K+ K +EN++   E
Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A LS++L  +  + P+ + +E L  E  N  +L+ F K ++F + + ++  T
Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294


>gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 891

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L   F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
           polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 178/411 (43%), Positives = 271/411 (65%), Gaps = 8/411 (1%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           EKLL +Y  ++KP+  V++ ME TG+++D   L+ +S E+++ +  LEE ++ L+G  FN
Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485

Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           L+S  QL  +LF +L+ P+  KT KTG+  T+A  LE +    +PI++ IL+ R+L+K+K
Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           +TY D LP+ ++  T R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAF++  
Sbjct: 545 NTYVDPLPSLVHPNTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR A
Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT+NF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYVET
Sbjct: 665 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGRR +  ++N+   S+R   ER A N P+QG+AAD+ + AM+ +   L +  +  +ML
Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARML 782

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+ E P+      + +   +MEKA      L VPL+V + +  +W
Sbjct: 783 LQVHDELLLEAPQAGAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDW 829



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/286 (39%), Positives = 159/286 (55%), Gaps = 8/286 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L    KE     
Sbjct: 8   FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKAL----KEDGYKA 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD+
Sbjct: 63  VFVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT     EKEG+ V I++ D+DL QLVS    +    +   I  E + +K+G+ PE+ V
Sbjct: 123 LATLAKNPEKEGYEVRILTADRDLDQLVSDRVAVLHP-EGHLITPEWLWQKYGLKPEQWV 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  
Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDL 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           RLS +L  +RTD+P+ + L      D  G R  +FL+ LEF  L++
Sbjct: 242 RLSLELSRVRTDLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285


>gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
 gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
          Length = 879

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/531 (38%), Positives = 318/531 (59%), Gaps = 11/531 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506
           + +S  K+ FE+E  +K   +IK D ++L + GI+++  ++D+MLM Y++D  RSS+D+ 
Sbjct: 354 DFVSKFKEIFEDEEIVKNSFDIKEDVVLLDKLGINLKLPYDDMMLMHYLIDPSRSSYDLK 413

Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            ++Q +L Y  K   ++L   K ++    +   ++  +     N I     +L  KL   
Sbjct: 414 VLSQSYLDYEVKSPVDLLGKGKKALKYQDLDFDELGNYLASGINAIEDSKEILEDKLDEY 473

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +L +Y+ ++  +  V++ MEI G   D+ +L+ +   I K++  + E IY+L+G +FN+
Sbjct: 474 HMLDLYKEIEIKLSKVLADMEIVGFVTDKKVLEDLKENIDKDIDKITEEIYELAGSEFNI 533

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +S KQLG++LF  L  P   KTKTG + T AQ LE++    + II  I  +R+L K++ST
Sbjct: 534 NSTKQLGEVLFKDLDLPVIKKTKTG-FSTNAQVLEKLRDK-HQIIPKIERYRELFKLRST 591

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y + L   I++   R+ + +      TGRL+S +PNLQN+PIKTD G+ IR+AF +   K
Sbjct: 592 YIEGLEKAIDE-DGRIRSTFRQNIAATGRLSSQDPNLQNLPIKTDEGRLIRKAFRAEEGK 650

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            LI ADYSQIELRILA ++    +   F+  +DIH   A+++F  +++KV+ + R  AK 
Sbjct: 651 ILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTASKVFHTDLDKVTKRQRSEAKA 710

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF IIYGIS + L+  L IPR EA +YI  Y   +P I EY++      +++GYVET+F
Sbjct: 711 VNFGIIYGISDYGLSQNLNIPRKEAKEYIDNYMASYPSIKEYMDSIVEKAKEDGYVETLF 770

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  EINS   ++R+  +R A+N PIQG+AADI + AMI   K+L+   L  K++LQ
Sbjct: 771 KRRRYVPEINSRNFNVRSFGQRVALNTPIQGTAADIIKIAMIETDKNLKKAGLDAKIVLQ 830

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           IHDE++ E  E     A +I+  SME A     +L VPL V+I    +  E
Sbjct: 831 IHDEIILEADESSKDEAIKILRESMENAT----DLEVPLIVDIDTGVSMYE 877



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 154/283 (54%), Gaps = 9/283 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DGSS I+RAF+A P L+  +DG+  N + GF  M      N+       +  V FD
Sbjct: 5   VMLIDGSSLIFRAFFALPKLTN-NDGVMTNGVYGFLTMY----NNAFDRYKPDYVLVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR++ + DYK  R K+P  L  Q  +++    +  +   ++ GFEADDI+ TY  
Sbjct: 60  RASKTFRHKEFEDYKGTRDKMPSELSYQFGILKDILDSLNVKYTDLDGFEADDIVGTYAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182
           +A++ G+   +I+ D+D +QLV     +  T K     ++  ++ + +++G+ P++++ +
Sbjct: 120 MAQEAGYESVLITGDRDYLQLVDEKIVVNLTKKGVSETKEYTVDTIKEEFGLSPKQLIEV 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+ GIG K A   +Q+YG++E +  +   +  KK ++ +++    A +
Sbjct: 180 KGLEGDKSDNIPGVDGIGPKKAIGFIQKYGSIEGLYDHIDEVSGKKTKQTLIDSEAIAYM 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           S+K+  + T  P+   LE L ++D +   L        F K +
Sbjct: 240 SKKIGTIVTSAPVEFDLEELKVKDPDLESLREKYSKYNFNKFL 282


>gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293]
 gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293]
          Length = 891

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 194/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%)

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++  K   E+  K  K ++P  +I 
Sbjct: 399 GIDVQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG + T+A
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++    + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIPI+ + G+KIR+AF+  P+++   + +ADYSQIELR+LAHIA    L   F
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++
Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N P
Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A
Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               I L VPLKV+      W
Sbjct: 871 ----IELAVPLKVDYSYGPTW 887



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +    + 
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 311 LDDITFDI 318


>gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
          Length = 880

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRAKVLLSHYGIELPAATFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADG-KIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/303 (39%), Positives = 167/303 (55%), Gaps = 19/303 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 ATT 291
            TT
Sbjct: 294 GTT 296


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 867

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 201/524 (38%), Positives = 314/524 (59%), Gaps = 14/524 (2%)

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           K  +NE    IGH+IK   + L  +GI +   F D  +M+Y+L+   S++DI  + +K+L
Sbjct: 348 KLLDNEKLTLIGHDIKDFFVNLSYHGIELNCKFYDTAIMTYLLNPSESNYDIGRVLKKYL 407

Query: 514 SY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
                  +++L   KS    D I    + ++    ++ + +L   L   +   ++  + +
Sbjct: 408 KEDIPNIEDMLGKGKSKKSYDDIDKKLLIDYLCATASKLSKLKDKLMSFIKEMEMEELLD 467

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P+++V+  ME+ G  +D+D+LK +S EI +    + ++IYD +G +FN++S KQL 
Sbjct: 468 NVELPLVEVLKSMEVYGFTLDKDVLKDLSKEIGEKTDKIIKDIYDAAGYEFNINSTKQLS 527

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LP 689
           + LF KL  P   KTKTG + T  + L ++    N I+  I+E+RQL K+KSTY D  +P
Sbjct: 528 EFLFDKLNLPPIKKTKTG-YSTDMEVLVEL-IPYNEIVGEIIEYRQLMKLKSTYIDGFMP 585

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISA 748
             I  +  +VH+ +      TGR++S EPNLQNIP++ + G++IR+AFIS      ++SA
Sbjct: 586 --IMDKDDKVHSTFKQTVAATGRISSTEPNLQNIPVRDEFGRRIRKAFISSFQGGYIVSA 643

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR+LAH+++   L + F N+ DIH   A+E+F +  E+V+ +MRR AK +NF I
Sbjct: 644 DYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPEEVTGEMRRRAKAVNFGI 703

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + L+  L+I R EA +YI  YF R+ G+  YI+    F R+NGYV TI  RR +
Sbjct: 704 VYGISDYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRY 763

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             EINS   + R+  ER A+N PIQGSAADI + +M+ V+  L+   L +K++LQIHDEL
Sbjct: 764 IPEINSKNYNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKSRSLKSKLILQIHDEL 823

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + +   +E+     ++   ME      I LRVPL V+I    NW
Sbjct: 824 IVDTFPDEVEIVKNLLKTIMENV----IKLRVPLVVDIGYGKNW 863



 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 120/291 (41%), Positives = 171/291 (58%), Gaps = 10/291 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DG+S +YRA++A P L    +GL  NAI GF  ML KLL   + + IA    V FD
Sbjct: 4   FLIIDGNSLMYRAYFALPDLMN-SEGLHTNAIYGFSMMLLKLLDEEKPDYIA----VAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y  YK  R  +PE L+ Q+ +++    AF I  IEI+GFEADDII T + 
Sbjct: 59  KKAPTFRHKEYSAYKGTRQSMPEELIEQVDILKDVINAFNIKTIEIEGFEADDIIGTVSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTT----CLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           IA + G  V I++ D+D +QLVS       C     + E+ D   V++++ + P + + L
Sbjct: 119 IASENGLKVLIVTGDRDALQLVSDGVKVKICKKGITQMEEYDERAVVERYEVTPRQFIDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+P IG KTA  L++E+G++EN+L+N  ++K  K RENI    E A L
Sbjct: 179 KGLMGDKSDNIPGVPNIGEKTAIKLIKEFGSIENVLMNTDKLKG-KIRENIENNTEMAML 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           S+KL  +  +VPI I L    L D +  +LI   + LEFT LIN +    D
Sbjct: 238 SKKLATIERNVPIEIDLSEYQLRDYDREKLIDLFEKLEFTSLINDLKKDAD 288


>gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 21/529 (3%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
           +L ++ E+++  KI ++ K   +  HR GI++   E D+ML SY++D  RS  D+ S+  
Sbjct: 357 HLVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVS 416

Query: 511 KW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +  +Y +  I    K +K  IP + I    + EH    +  I  +   ++ +L     +
Sbjct: 417 LYGQNYVKDNITIFGKGKKHHIPEEPI----LNEHIASVTEAIAAVTPTMKSQLEDYNQI 472

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            + + L+ P+  ++S+ME  GI  D + LK++  EI K L  L  NI++ +GE FN++SP
Sbjct: 473 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 532

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG +LF  L+ P   KTKTG + T    LE++  G++PII +ILE+RQL+K++STY +
Sbjct: 533 KQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLAKLQSTYVE 590

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L   I+K   R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT K  
Sbjct: 591 GLQKVISK-DHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSKDS 647

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            ++SADYSQIELR+LAHI +   L   F N  DIH   A ++F V  ++V   MRR AK 
Sbjct: 648 VILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKA 707

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  GYVET+ 
Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLL 767

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+   + +++ K   K+LLQ
Sbjct: 768 HRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQ 827

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE+P+ E+   S+ +   ME+A +    L VPLKV+      W
Sbjct: 828 VHDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 165/295 (55%), Gaps = 15/295 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K++    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A++E F   II+ D+DL QL +    +Y T K+   D++H   K+      G+ P++
Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPKFIAEKYNGLVPKQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++ ++E +  +   +  KK +E ++   +
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 235

Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A +S+ L  +    PI + LE   L L+D +  + I   K LEF +L+  + T+
Sbjct: 236 DALMSKDLATINVHSPIEVSLEDTKLTLQD-DTTKKIELFKKLEFKQLLADIDTS 289


>gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057]
          Length = 880

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/515 (40%), Positives = 307/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +      T  E+  
Sbjct: 374 YDLKRAKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTVLPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERENLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IKLAVPLVADENAGQTWYE 878



 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 168/305 (55%), Gaps = 19/305 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PITI L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPITIGLDDLVYKGPQIETLSKFYDEMGFKQLKAQL 293

Query: 289 ATTYD 293
            T  D
Sbjct: 294 GTAQD 298


>gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
 gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
          Length = 880

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/516 (40%), Positives = 309/516 (59%), Gaps = 19/516 (3%)

Query: 467 HNIKYDKLVLHRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL 521
           +++K  K++L  YGI +    F D  L  Y+L S    +++A+IA+ +   +  T  E+ 
Sbjct: 374 YDLKRTKVLLSHYGIELPVASF-DARLAKYLL-STVEDNELATIARLYGQTILPTDDEVY 431

Query: 522 -KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K  K ++P       Q+ EH      ++L+    ++ +L     L +   +++P+  V+
Sbjct: 432 GKGAKRALP----EKEQLFEHLARKVQILLETEEPMQEQLRAHNQLDLLLEMEQPLAFVL 487

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P
Sbjct: 488 AKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLP 547

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
                KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++H
Sbjct: 548 LEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAA-DGKIH 606

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILA 759
           T Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LA
Sbjct: 607 TRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLA 666

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           HI++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA
Sbjct: 667 HISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLA 726

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +
Sbjct: 727 NNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFN 786

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           IRN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T
Sbjct: 787 IRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELT 846

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              Q++  +ME A    I L VPL  +      W E
Sbjct: 847 AVRQLVKETMEAA----IKLAVPLVADENAGQTWYE 878



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 167/305 (54%), Gaps = 19/305 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAR 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAAPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 ATTYD 293
            T  D
Sbjct: 294 GTGQD 298


>gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 893

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 319/526 (60%), Gaps = 15/526 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   ENE  LK   N+K   ++  R G++++G   D +L++Y+LD+  + + ++++AQ+
Sbjct: 373 LKSVIENEQILKNVFNVKAQLVLFKRLGLALKGVNFDFILVAYLLDTVANDNVLSTLAQR 432

Query: 512 WLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           +  Y   +     K  K ++P D    + +  H    ++ + +L      +L   +  H+
Sbjct: 433 FDVYLAPDEDIYGKGAKFAVPTDT---NLLLSHIAHKADGLFKLEKPAFTELKQHEQTHL 489

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y  ++ P+  V++ ME  GI+++ + L+    ++ + +  ++  IY  +GE+FNL+SPKQ
Sbjct: 490 YTDIELPLAFVLADMEYQGIKVNPEYLRNKGKDLYERIADIQSAIYIEAGEEFNLNSPKQ 549

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG +LF K+  P   KTKTG   +TA D+ +      PI+ +IL++RQL+K+KSTY D L
Sbjct: 550 LGVLLFEKMGLPVIKKTKTGY--STAVDVLEKLAPQAPIVDHILQYRQLAKLKSTYIDGL 607

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
            + I  +  ++HT +    T TGRL+S++PNLQNIP++++ G+ IR AF+ S P  ++  
Sbjct: 608 LSVIYPKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSEEGRLIRTAFVPSHPNWQIFG 667

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-SPQMRRHAKTINF 806
           ADYSQIELR+LAH+     + + F N  DIH   A  +FG+  + V  P  RR AK +NF
Sbjct: 668 ADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNF 727

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS + LA  L I R+EA  +I  YF  FP IHE++   K F  ++GYVETI  RR
Sbjct: 728 GIVYGISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHRR 787

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  +I +   ++R+  ER A+N+PIQGSAADI + AMI V+++L  + L  +MLLQ+HD
Sbjct: 788 RYLPDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVNEALRKNNLQARMLLQVHD 847

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FE P +EI   ++++ + M+ A    + L VPLKV+    + W
Sbjct: 848 ELIFETPVDEIDELTEVVTNVMDSA----VALDVPLKVDAHHGDTW 889



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 167/293 (56%), Gaps = 17/293 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R   H+GL  NA+  F N L K++     + +A   A+
Sbjct: 6   LLLIDGNSLAFRAFYAMYNQLDRMISHEGLHTNALVAFNNFLDKIV-----DPMAPDLAL 60

Query: 64  I-FDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           + +D  +   T R +++P+YK  R K+PE    Q P +R      G+   E  G EADDI
Sbjct: 61  VAWDAGSGKETHRGKLFPEYKDGRSKVPEEFKEQFPYLREMVMLHGLRNYEQAGLEADDI 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           I TY+ + E  G++V I++ D+DL QL +    + +  K+   DIE     ++ +K+GI 
Sbjct: 121 IGTYSRMGEAAGYSVIIVTGDQDLTQLATENVTV-NVTKKGVTDIESYTPAYIKEKFGIT 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++  +ALTGD+ DN PG+  +G KTA  LL EY N++N+  N  ++KQ K ++N++ 
Sbjct: 180 PVQIIDKKALTGDTSDNYPGVTKVGEKTALKLLAEYNNIDNLYDNIDKLKQSKMKDNLIN 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A  +R+L  + TD  + +PLE +     +  ++I F + L+F + + ++
Sbjct: 240 DRELAFQARELATILTDANLPLPLEEMEYRGVDFEKIIPFYENLDFKQHLAKI 292


>gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678]
          Length = 880

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 207/515 (40%), Positives = 307/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ +  E  K L SL + IYDL+G++FN++SPKQLG +LF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQTENEKTLESLTQEIYDLAGQEFNINSPKQLGTVLFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/305 (40%), Positives = 171/305 (56%), Gaps = 25/305 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR---LISFLKALEFTKLI 285
            +EN+++  + A LS+ L  + T  PI I L+ L+    NGP+   L  F   + F +L 
Sbjct: 234 MKENLIKDKDKAFLSKTLATINTQAPIEIGLDDLV---YNGPQVEALSKFYDEMGFKQLK 290

Query: 286 NRVAT 290
           +++ T
Sbjct: 291 DQLGT 295


>gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353]
          Length = 880

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 207/515 (40%), Positives = 309/515 (60%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRAKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----DQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IY+L+G++FN++SPKQLG ILF  ++ P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYNLAGQEFNINSPKQLGTILFEDMRLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 167/302 (55%), Gaps = 19/302 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  
Sbjct: 57  ---PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPTYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L +++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQIETLSKFYDEMGFKQLKDQL 293

Query: 289 AT 290
            T
Sbjct: 294 GT 295


>gi|332358870|gb|EGJ36692.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056]
          Length = 880

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/515 (40%), Positives = 307/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRAKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G+KFN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQKFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKSEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R   YVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKAYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHYYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 AT 290
            T
Sbjct: 294 GT 295


>gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
 gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
          Length = 928

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 207/534 (38%), Positives = 329/534 (61%), Gaps = 26/534 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L+  +E+ +  K   N KYD  +   + I ++G + D ML SYVL+   +SH++A +A  
Sbjct: 411 LQPIWEDPNRPKSLQNCKYDLSIFRAHSIRLQGIQFDPMLASYVLNP-EASHNLADLAAS 469

Query: 512 WLSY--TRKEILKSRKSSI---PIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEK 564
           +L+   T  E L  +  S+   PI K++     E+   ++    +L  +L  KL     +
Sbjct: 470 YLNLPTTSYEKLLGKAESLADLPIAKVA-----EYCGTDAYCAYRLVPILTEKLQQTDPR 524

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L +++ +++ P+  V+ +ME  GI+ID + L+Q S E+ K L SLE+  Y  +GE FNL+
Sbjct: 525 LWNLFVQVELPLAHVLEEMEWVGIRIDTEFLRQFSQELEKELHSLEQKAYAQAGEVFNLN 584

Query: 625 SPKQLGDILFTKLKFP--SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           SPKQLG +LF KLK       KT TG + T A  LE++  GD+P+I+ IL++R L+K+KS
Sbjct: 585 SPKQLGSLLFEKLKLDVRKTRKTATG-YSTDASVLEKLE-GDHPVIETILQYRTLAKLKS 642

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  + + T RVHT ++   T TGRL+S  PNLQNIPI+++  ++IR+AF+    
Sbjct: 643 TYVDALPALVRRDTGRVHTSFNQTVTATGRLSSSNPNLQNIPIRSEFSRRIRQAFVPQEG 702

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             L SADYSQIELRILAH+++   L + F +  D+H + A  +F    ++V+ + RR AK
Sbjct: 703 WLLASADYSQIELRILAHLSQEPTLIECFRSGEDVHTLTARLLF--EKQEVTSEERRLAK 760

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           TIN+ +IYG+   R A    +  +EA ++++R+  R+ G+  Y+  T+ FV ++GYVET+
Sbjct: 761 TINYGVIYGMGAQRFARTAGVSLAEAKEFLRRFNERYAGVFAYLRATEAFVEKHGYVETL 820

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GRR ++  ++      +    RAA+NAPIQGSA+DI + AM+ + + L++ +  +++LL
Sbjct: 821 LGRRRYFPNLSQLSGHRKQAELRAAVNAPIQGSASDIIKVAMVRLQEKLQNFR--SRLLL 878

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           Q+HDELVFEV   E      +I   ME+A    + L +PL V+I++ +NW+E N
Sbjct: 879 QVHDELVFEVEPSEWQDLRPLIQREMEEA----VPLSIPLVVDIQIGHNWKEAN 928



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 150/296 (50%), Gaps = 25/296 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  YR+FYA         R   G+P +   GF   L ++L+    +   +H A
Sbjct: 8   LLLVDGHSLAYRSFYAFAHSREGGLRTSTGIPTSVSFGFLKSLLEVLE----KYPPTHIA 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR+E    YKA RP+ P   +  +  ++    A  IP + + GFEADD++ 
Sbjct: 64  VAFDTRQPTFRHEADETYKAGRPETPPEFVEDVENLQQVLAALRIPILAVPGFEADDVLG 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-------DTVKEEKIDIEHVIKKWGIP 175
           T   +A +E + V I+S D+DL QL+ P   +        D V E     + V +K GI 
Sbjct: 124 TLCRLAPQE-YRVQILSGDQDLFQLIDPEGRIRVLHLNSKDRVSE--FGPQEVKEKLGIW 180

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRREN 232
           P ++V  +AL GD  DNIPG+ GIG K AA LLQ YG+LE I  +   I    Q+  RE 
Sbjct: 181 PWQVVDYKALCGDPSDNIPGVKGIGPKRAAELLQRYGSLEEIFNHLGEIPGKIQQYLREG 240

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           I      A+ S+ L  +  DVP++   E + L   +   ++  L+ LEF   I +V
Sbjct: 241 I----PAAQHSQFLARIHCDVPLSPDWESMRLTGFDPEEVLPLLEKLEFRSFIAQV 292


>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
          Length = 554

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/496 (38%), Positives = 302/496 (60%), Gaps = 31/496 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 84  REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 123

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 124 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 180

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT+ TG+  T+A  
Sbjct: 181 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTENTGKRSTSAAV 240

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++  +T TGRL+S 
Sbjct: 241 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 299

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IRRAFI+     L++ DYSQIELR+LAH++    L +VF+   D
Sbjct: 300 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 359

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+ +FGV  E V P MRR AKTIN+ ++YG+S   L+ +L IP  EA  +I+RYF
Sbjct: 360 IHTETASWMFGVPREAVDPLMRRTAKTINYGVLYGMSAHHLSQELAIPYEEAQAFIERYF 419

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IEKT    R+ GYVET+FGRR +  ++ +   S+R   ER A N P+QG+A
Sbjct: 420 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 479

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   LE+  +  +MLLQ+HDELV E P+E     +++    ME    P  
Sbjct: 480 ADLMKLAMVKLLPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 534

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V + +  +W
Sbjct: 535 -LAVPLEVEVGIGEDW 549


>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 956

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 205/524 (39%), Positives = 314/524 (59%), Gaps = 26/524 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   EN+   K+ H+ K     L++  I+++ F+ D  + +Y+LDS +S +++  + +K
Sbjct: 455 LKNVMENDKVKKVIHDGKNLVTFLNKNNITVKEFDFDTAIAAYLLDSAQSKYNLTELIEK 514

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +L+   KEI              D    E+     + I +L+++L+  +  EK+  +Y  
Sbjct: 515 YLN---KEI--------------DGIESENEGILGSYIPKLYMILKSNIEKEKMDKLYYE 557

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+I V+S ME  G  I+Q +L ++  +    +   ++ IY+L+ E+FN+SSPKQLG 
Sbjct: 558 VEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIYELADEEFNVSSPKQLGK 617

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL  P   KTKTG + T  + LE++    + II  I+ +RQ++KI STY + L N 
Sbjct: 618 ILFEKLDLPIIKKTKTG-YSTNQEVLEKL-LDKHEIIPKIMYYRQITKISSTYVEGLKNV 675

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADY 750
           I++   R+H+ ++   T TGRL+S +PNLQNIPI+ +LG++IR+ FI       L+S DY
Sbjct: 676 IDE-DGRIHSNFNQTVTTTGRLSSTDPNLQNIPIRHELGREIRKVFIPLQEGDTLVSCDY 734

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LAHIA    +   F++  DIH   A+E+F V +E V+  MR  AK +NF I+Y
Sbjct: 735 SQIELRVLAHIAGDENMIDAFKHHSDIHTKTASEVFKVPVEDVTSLMRSRAKAVNFGIVY 794

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS F L+  L+IP++EA +Y+  YF R+P I  Y+E   +   + GYV TI  RR    
Sbjct: 795 GISAFSLSQDLKIPKAEAQEYMNIYFERYPKIKSYLENIVSEAEEKGYVLTILNRRRFIP 854

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           EIN+    ++ + ER A+NAPIQGSAADI + AMI+V+  L++ K+ +K++LQ+HDEL+ 
Sbjct: 855 EINASNKIVKALGERLAMNAPIQGSAADIIKIAMINVYNKLKESKMQSKLILQVHDELIL 914

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            V E E     +I+V  ME A    I L V L V+I     W E
Sbjct: 915 NVKENEFEEVKKIVVDEMENA----IKLSVGLDVDINSGKTWYE 954



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 128/281 (45%), Gaps = 49/281 (17%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP----LLSRKHD--------------GLPVNAIAGFC 42
           M KE +L L+DGSS +   +Y       + ++ ++              G+  NAI GF 
Sbjct: 18  MDKE-YLLLIDGSSLLSTQYYGNLPREIMFAKTNEEREAFYEKIMQTSMGIYTNAIYGFM 76

Query: 43  NMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102
               K+L    +E   +H AV +D    TFR EI  DYK  R + P  L  Q  L +   
Sbjct: 77  RTFLKIL----REQKPTHVAVTWDLSRDTFRREIDSDYKGTRGETPSPLKEQFKLCQEIL 132

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKE 160
               +       +EADD   +     E E   V I++ D D +QLVS  T L+   T +E
Sbjct: 133 AKMNVMQFMDSKYEADDFCGSIASKLEGE-IPVRILTKDTDYLQLVSENTKLWLMFTTQE 191

Query: 161 EKIDI----------------------EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
           +  D+                      E V  ++GI PE++  L++L GD  DNI G+ G
Sbjct: 192 KADDLFKKYEIKKSTANIPDKAFELTPELVKSEYGIKPEQVADLKSLVGDKSDNIKGVAG 251

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           +G  +A  L+ EYG +EN+  +   + +K+ +E I +Y +T
Sbjct: 252 VGEASAVPLINEYGTVENLYEHIRNLDKKQEKE-IKDYWKT 291


>gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
 gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
          Length = 975

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 202/548 (36%), Positives = 314/548 (57%), Gaps = 31/548 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L+   E+    K  H++K     L  +GI++ G  +D+ML+SY+++    SH +  +  +
Sbjct: 431 LRDALEDAALPKDLHDLKAVLRALEPHGITLAGVRDDVMLLSYLVNPTHGSHTLPDVVAR 490

Query: 512 WLSYTRKEILKSRKSS--IP--------IDKISDSQVQE-----HAIENSNVILQLW--- 553
           + +     ++K   S   +P        +  I   QV+E     H I   +  L      
Sbjct: 491 FTNRALTPVVKGVVSPTLLPESANAIHRVAPILRKQVEEAGLVVHEIPKDDPALGGAVTH 550

Query: 554 -LLLRPKL--IVEK----LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            +L  P    +V K    L+ VYE +D P++ V+ +ME  G++ID  +L ++S+ ++  +
Sbjct: 551 EMLFPPAAAPVVGKADGPLVKVYETIDLPLVPVLLRMEEAGVRIDPAVLNEMSSRLAVEI 610

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
            +L E IY  SG +FN++SPKQLGD+LF K+  P   K   G+  +TAQD+ +    ++P
Sbjct: 611 DNLAEKIYADSGHRFNINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVLEELAENHP 670

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I   ++E RQL K+KSTY D LP+ ++ R  R+HT ++   T TGRL+S  PNLQNIP +
Sbjct: 671 IAALVIEHRQLQKLKSTYLDQLPS-LSDREGRIHTTFNQVGTATGRLSSTNPNLQNIPTR 729

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           T +G++IR AFI+ P   L+SADYSQIELR++AH ++   L   +    DIH + AAE+F
Sbjct: 730 TAIGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLNAYRTGQDIHTLTAAEVF 789

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV+ E +  + R  AK +NF I+YGISPF LA QL I +  A  YI+ Y+ R+ GI  +I
Sbjct: 790 GVDAETMDKETRARAKAVNFGIVYGISPFGLAAQLGIDQKVARTYIETYYDRYKGIKRFI 849

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           ++T   VR  G V T FGR     +I S   ++R   ER AIN P+QG+AAD+ + AMIS
Sbjct: 850 DETLETVRLAGAVSTHFGRVRPIPDIQSRNPNMRGFAERTAINTPLQGTAADLIKLAMIS 909

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           + + +    L ++M LQ+HDEL+F+V   E      ++ H ME          +P+  +I
Sbjct: 910 LDREIRARGLKSRMTLQVHDELLFDVVPSEAEEMQTLVQHEMENVA----EFSIPIVADI 965

Query: 967 KVSNNWQE 974
            + +NW++
Sbjct: 966 GLGDNWRD 973



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 172/330 (52%), Gaps = 37/330 (11%)

Query: 7   LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++L+D  +FI+RA++A     P+ +R   G+P  A   F NM+ KL    RK+    + A
Sbjct: 13  IYLLDSMAFIFRAYHAMQRQRPMSTRT--GIPTAATYVFVNMINKL----RKDFAPVYLA 66

Query: 63  VIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLVRLA 101
            ++D  A   RNE+                     Y  YKANR + P  L+ Q P +R A
Sbjct: 67  AVYDVGAPVHRNELATQLKDVKKFNIKTQQFETTEYGGYKANRVETPPDLIQQQPYIRRA 126

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
            +AF IP +  +GFEADD+I T +      G  V ++S+DKD+MQLV+    + +  K+ 
Sbjct: 127 LEAFRIPILYYEGFEADDVIGTLSCKLSALGHHVYVVSSDKDMMQLVNDNVSILNPTKDN 186

Query: 162 KI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
            I D   V    G+PPE+++ + AL GD+IDNIPG PGIG K +  L+Q++G +E  L  
Sbjct: 187 LILDPAGVEGILGVPPERVIDVMALRGDAIDNIPGAPGIGDKGSVELIQQFGTVEGALDR 246

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           A  +K+K  RE++L   E   LS++LV + T VPI   +E +  +  +          LE
Sbjct: 247 AEEVKKKTYRESLLNNRENIMLSKELVTIHTGVPIEYSIEAMRTQPVDNAACRELFSELE 306

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTE 310
           FT L+  +A   D       P+  ++  TE
Sbjct: 307 FTTLLKELAPAVDN-----TPLAFNLKATE 331


>gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 21/529 (3%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
           +L ++ E+++  KI ++ K   +  HR GI++   E D+ML SY++D  RS  D+ S+  
Sbjct: 357 HLVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVS 416

Query: 511 KW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +  +Y +  I    K +K  IP + I    + EH    +  I  +   ++ +L     +
Sbjct: 417 LYGQNYVKDNITIFGKGKKHHIPEEPI----LNEHIASVTEAIAAVTPTMKSQLEDYNQI 472

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            + + L+ P+  ++S+ME  GI  D + LK++  EI K L  L  NI++ +GE FN++SP
Sbjct: 473 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 532

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG +LF  L+ P   KTKTG + T    LE++  G++PII +ILE+RQL+K++STY +
Sbjct: 533 KQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLAKLQSTYVE 590

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L   I+K   R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT K  
Sbjct: 591 GLQKVISK-DHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSKDS 647

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            ++SADYSQIELR+LAHI +   L   F N  DIH   A ++F V  ++V   MRR AK 
Sbjct: 648 VILSADYSQIELRVLAHITQDESLKHAFINRHDIHTATAMKVFNVESDQVDSLMRRQAKA 707

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  GYVET+ 
Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLL 767

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+   + +++ K   K+LLQ
Sbjct: 768 HRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQ 827

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE+P+ E+   S+ +   ME+A +    L VPLKV+      W
Sbjct: 828 VHDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 164/295 (55%), Gaps = 15/295 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K++    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A++E F   II+ D+DL QL +    +Y T K+   D++H   K+      G+ P++
Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPKFIAEKYNGLVPKQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++ ++E +  +   +  KK +E ++   +
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 235

Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A +S+ L  +    PI + LE   L L+D    + I   K LEF +L+  + T+
Sbjct: 236 DALMSKDLATINVHSPIEVSLEDTKLTLQDDTTEK-IELFKKLEFKQLLADIDTS 289


>gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1]
          Length = 833

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 197/498 (39%), Positives = 304/498 (61%), Gaps = 33/498 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+++   +D +L++Y+LD   ++ +   +A+++                        +
Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTNPE--GVARRY----------------------GGE 399

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A E + +  +L+  L P+L  EKLL +Y+ +++P+  V++ ME  G+++D  LL+ 
Sbjct: 400 FTEDAAERALLSERLFQNLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656
           +S E+ K +  LE  I+ L+G  FNL+S  QL  +LF +L   P G   KTG+ ++TAQ 
Sbjct: 459 LSFELEKEMERLEGEIFRLAGHPFNLNSRDQLERVLFDELGLTPVGRTEKTGK-RSTAQG 517

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +   G +PI++ IL++R+LSK+KSTY D LP  ++ RT R+HT ++  +T TGRL+S 
Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IR+AF++     L++ADYSQIELR+LAH++    L +VF    D
Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA +FG++   V P+MRR AKT+NF ++YG+S  RL+ +L I   EA  +I+RYF
Sbjct: 638 IHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IE+T    R  GYVET+FGRR +  ++ S   S+R   ER A N P+QG+A
Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   L+   L   +LLQ+HDELV EVPE+    A  ++   ME A     
Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENAY---- 811

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL+V + V  +W E
Sbjct: 812 PLDVPLEVEVGVGRDWLE 829



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/284 (38%), Positives = 154/284 (54%), Gaps = 12/284 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDG    YR FYA  L + +  G PV  + GF   L K L+   +  +     V+
Sbjct: 12  KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++ T 
Sbjct: 65  FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              AE+EG  V I++ D+D  QL+S   +  L D       D++   +K+G+PPE+ V  
Sbjct: 125 AKKAEREGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +ALTGD  DNIPG+ GIG KTA  LL E+G++EN+L N  R+K    R  I  + E   L
Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSVRRKIEAHLEDLHL 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           S  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++
Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLH 285


>gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans]
          Length = 903

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 193/512 (37%), Positives = 303/512 (59%), Gaps = 16/512 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFEDIM-LMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521
           H+    ++ L  +G++ RG      + +Y+LD   S H +A +++++    +        
Sbjct: 398 HDSHRAEVALFWHGLAFRGTSFCTHIAAYLLDPTESRHTLADLSRRYGLPPVPEAEDVYG 457

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K  +P        +  +    + ++ +L  LL   L    +  ++  L+ P+   ++
Sbjct: 458 KGAKFKVP----DRDTLARYVGRKAALVARLVPLLEADLAACGMRSLFYDLELPLSSELA 513

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  G+++D   L     E+ +    +E  IY+L+G  FN+ S KQLG+ILF KL  P 
Sbjct: 514 VMETVGVRVDAAALAAYGEELREAAAKVEREIYELAGTTFNIGSTKQLGEILFDKLGLPV 573

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG + T A  LE++    +PI++ IL +RQL+K++STY + L   I  +T ++HT
Sbjct: 574 VKKTKTG-YSTDADVLEEL-APYHPIVEKILHYRQLTKLQSTYIEGLLKEIRPQTGKIHT 631

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
           +Y      TGRL+S  PNLQNIPI+ + G+KIR+AF+ S P   +++ADYSQIELR+LAH
Sbjct: 632 YYQQTIAATGRLSSQFPNLQNIPIRLEEGRKIRKAFVPSEPGWLMLAADYSQIELRVLAH 691

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L + F   +DIH   A ++FGV+ ++V  +MRR AK +NF IIYGIS F LA  
Sbjct: 692 VSGDERLKEAFRTGMDIHTKTAMDVFGVSEDRVDARMRRQAKAVNFGIIYGISDFGLAQN 751

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I R EAA++I++YF  F G+  Y E+     R++GYV T+ GRR +  +IN+   ++R
Sbjct: 752 LNISRKEAAEFIRQYFAVFSGVKAYRERIVEQARRDGYVTTLLGRRRYLPDINASNYNLR 811

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ER A+N PIQG+AADI + AM+ + + + D  L ++MLLQ+HDELVFEVP +E+   
Sbjct: 812 SFAERTAMNTPIQGTAADIIKTAMVRLTRRMRDVGLKSRMLLQVHDELVFEVPPDELDAM 871

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +++   ME A    + L VPLKV++    +W
Sbjct: 872 RELVTDVMESA----VPLDVPLKVDVSWGADW 899



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/320 (37%), Positives = 181/320 (56%), Gaps = 13/320 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDG+S   RAFYA  LLS +  GL  NA+ GF NML KL++  R     +HF V FD
Sbjct: 4   LILVDGNSVANRAFYAVRLLSTR-GGLHTNAVYGFANMLLKLIEEERP----THFLVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+  Y  YKA R + P  L  Q P +R   +AFG+ + E++ +EADD+I T   
Sbjct: 59  AGKATFRHREYEAYKAGRLQTPPELSEQFPYIRELVRAFGVASGELEEYEADDMIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182
            AE EG    +++ D+DL+QLVS    +  T K     E+ D   + +++G  P+++  L
Sbjct: 119 RAEAEGVDTLVVTGDRDLLQLVSDRVTVALTRKGITETERYDPARIREEYGFDPDRIRDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DN+PG+PG+G KTA  LL++YG+LE++L +AS I  K   EN+  +A+ ARL
Sbjct: 179 KGLMGDASDNLPGVPGVGEKTALKLLRQYGSLESVLEHASEIAGKL-GENLRAHADAARL 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAANI 299
           S++L  +   VP+    + L L + +   L S L+ LEF  L+ R+    T+ D D   +
Sbjct: 238 SKRLATIDCAVPLQSGWDWLRLGEPDRAALASLLRQLEFKSLLKRLGLDGTSADADVDGV 297

Query: 300 EPVVLDINTTENKGIAIETE 319
                  +    + +A+  E
Sbjct: 298 RSSARPADEKRPRAVAVAEE 317


>gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
 gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
          Length = 903

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 21/529 (3%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
           +L ++ E+++  KI ++ K   +  HR GI++   E D+ML SY++D  RS  D+ S+  
Sbjct: 384 HLVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVS 443

Query: 511 KW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +  +Y +  I    K +K  IP + I    + EH    +  I  +   ++ +L     +
Sbjct: 444 LYGQNYVKDNITIFGKGKKHHIPEEPI----LNEHIASVTEAIAAVTPTMKSQLEDYNQI 499

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            + + L+ P+  ++S+ME  GI  D + LK++  EI K L  L  NI++ +GE FN++SP
Sbjct: 500 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 559

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG +LF  L+ P   KTKTG + T    LE++  G++PII +ILE+RQL+K++STY +
Sbjct: 560 KQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLAKLQSTYVE 617

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L   I+K   R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT K  
Sbjct: 618 GLQKVISK-DHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSKDS 674

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            ++SADYSQIELR+LAHI +   L   F N  DIH   A ++F V  ++V   MRR AK 
Sbjct: 675 VILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKA 734

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  GYVET+ 
Sbjct: 735 VNFGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLL 794

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+   + +++ K   K+LLQ
Sbjct: 795 HRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQ 854

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE+P+ E+   S+ +   ME+A +    L VPLKV+      W
Sbjct: 855 VHDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 899



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 165/295 (55%), Gaps = 15/295 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K++    KE   +HF V 
Sbjct: 29  NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 83

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 84  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 143

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A++E F   II+ D+DL QL +    +Y T K+   D++H   K+      G+ P++
Sbjct: 144 SRQADEEDFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPKFIAEKYNGLVPKQ 202

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++ ++E +  +   +  KK +E ++   +
Sbjct: 203 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 262

Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A +S+ L  +    PI + LE   L L+D +  + I   K LEF +L+  + T+
Sbjct: 263 DALMSKDLATINVHSPIEVSLEDTKLTLQD-DTTKKIELFKKLEFKQLLADIDTS 316


>gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 877

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 200/492 (40%), Positives = 302/492 (61%), Gaps = 17/492 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           D ML  Y++ S    + I++IA+ +    L+   +   K  K ++P D+I    + +H  
Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFDVGHLATDEEIFGKGTKLALPDDEI----LFDHLA 450

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
               V+ +    +  +LI  +  H+   ++ P+ +V+++MEITGI + Q+ L+++ AE  
Sbjct: 451 RKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAENE 510

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + L SL   IYDL+GE+FN++SPKQLG ILF KL+ P G KTKTG   +TA D+ +    
Sbjct: 511 EKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P++  ILE+RQ++K +STY   L   I     ++HT Y    T TGRL+S++PNLQNI
Sbjct: 569 LSPVVAKILEYRQINKEQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++ + G+KIR+AF+      L+S+DYSQIELR+LAHI+    L   F++  DIH   A 
Sbjct: 628 PVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAM 687

Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +FG+   E V+   RR+AK +NF ++YGIS F LA  L I R +A +YI+ YF R+PGI
Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E      R  G+VET+  RR    +IN+   ++R   ER AIN+PIQGSAADI + 
Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K+L + +  +K+LLQ+HDE++ +VP EE+     ++  +ME+A    I L VPL
Sbjct: 808 AMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEA----IELAVPL 863

Query: 963 KVNIKVSNNWQE 974
           KV+      W E
Sbjct: 864 KVDDNTGKTWYE 875



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 166/297 (55%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A    L R    +GL  NAI  F  ML  L++  +    
Sbjct: 1   MEDKNRLLLIDGSSVAFRAFFALYNQLDRFKAPNGLHTNAIFAFHTMLSSLMERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  +EA
Sbjct: 57  PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116

Query: 118 DDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+  N   +K  K ++
Sbjct: 177 MGLTPSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKD 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           N++   E A LS++L  + T  P+ I LE  +L++ N   L  F   + F++  +++
Sbjct: 237 NLIADKEMAFLSQQLATINTKAPLEIGLEDTLLKEKNVAELGQFYDEMGFSQFKSKL 293


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 200/497 (40%), Positives = 304/497 (61%), Gaps = 33/497 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R GI++   +D ML++Y+LD   ++ +   +A+++                        +
Sbjct: 360 REGIALAPGDDPMLLAYLLDPSNTAPE--GVARRY----------------------GGE 395

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             E A E + +  +L+  L  +L  E +LL +YE ++KP+  V++ ME TG+++D   LK
Sbjct: 396 WTEEAGERALLSERLYAALLERLKGEERLLWLYEEVEKPLSRVLAHMEATGVRLDVAYLK 455

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQ 655
            +S E+   L  LEE ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A 
Sbjct: 456 ALSLEVEAELRRLEEEVHRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 515

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +    +PI+  IL++R+LSK+K TY D LP  ++ +T R+HT ++  +T TGRL+S
Sbjct: 516 VLEALREA-HPIVDRILQYRELSKLKGTYIDPLPALVHPKTNRLHTRFNQTATATGRLSS 574

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++T LGQ+IRRAF++    KL+  DYSQIELR+LAH++    L +VF+   
Sbjct: 575 SDPNLQNIPVRTPLGQRIRRAFVAEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEGQ 634

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+ +FGV  E V   MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RY
Sbjct: 635 DIHTQTASWMFGVPPEAVDSLMRRAAKTINFGVLYGMSAHRLSGELAIPYEEAVAFIERY 694

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P +  +IEKT    R+ GYVET+FGRR +  ++ S   SIR   ER A N P+QG+
Sbjct: 695 FQSYPKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGT 754

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AM+ +   L++  L  +MLLQ+HDELV E P+E+    +Q    +ME+     
Sbjct: 755 AADLMKLAMVKLFPRLQE--LGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEVW--- 809

Query: 956 INLRVPLKVNIKVSNNW 972
             L+VPL+V + +  +W
Sbjct: 810 -PLKVPLEVEVGIGEDW 825



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 163/301 (54%), Gaps = 9/301 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      I   
Sbjct: 5   FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALREDGDVVI--- 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR++ Y  YKA R   PE    QL L++      G+  +E+ GFEADD+
Sbjct: 61  --VVFDAKAPSFRHQTYEAYKAGRAPTPEDFPRQLALIKEMVDLLGLERLEVPGFEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    AEKEG+ V I++ D+DL QL+S    +    +   I  E + +K+G+ P + V
Sbjct: 119 LATLAKKAEKEGYEVRILTADRDLYQLLSERISILHP-EGYLITPEWLWEKYGLKPSQWV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+ GIG KTAA L++E+G+LEN+L +  ++K    RE IL + E  
Sbjct: 178 DYRALAGDPSDNIPGVKGIGEKTAAKLIREWGSLENLLKHLEQVKPASVREKILSHMEDL 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +LS +L  +RTD+P+ +        D  G  L +FL+ LEF  L++         AA   
Sbjct: 238 KLSLELSRVRTDLPLQVDFARRREPDREG--LKAFLERLEFGSLLHEFGLLESPVAAEEA 295

Query: 301 P 301
           P
Sbjct: 296 P 296


>gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2]
          Length = 833

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 196/498 (39%), Positives = 304/498 (61%), Gaps = 33/498 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+++   +D +L++Y+LD   ++ +   +A+++                        +
Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTNPE--GVARRY----------------------GGE 399

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A E + +  +L+  L P+L  EKLL +Y+ +++P+  V++ ME  G+++D  LL+ 
Sbjct: 400 FTEDAAERALLSERLFQNLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656
           +S E+ K +  LE  ++ L+G  FNL+S  QL  +LF +L   P G   KTG+ ++TAQ 
Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPFNLNSRDQLERVLFDELGLTPVGRTEKTGK-RSTAQG 517

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +   G +PI++ IL++R+LSK+KSTY D LP  ++ RT R+HT ++  +T TGRL+S 
Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IR+AF++     L++ADYSQIELR+LAH++    L +VF    D
Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA +FG++   V P+MRR AKT+NF ++YG+S  RL+ +L I   EA  +I+RYF
Sbjct: 638 IHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IE+T    R  GYVET+FGRR +  ++ S   S+R   ER A N P+QG+A
Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   L+   L   +LLQ+HDELV EVPE+    A  ++   ME A     
Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENAY---- 811

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL+V + V  +W E
Sbjct: 812 PLDVPLEVEVGVGRDWLE 829



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/284 (38%), Positives = 154/284 (54%), Gaps = 12/284 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDG    YR FYA  L + +  G PV  + GF   L K L+   +  +     V+
Sbjct: 12  KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++ T 
Sbjct: 65  FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              AE+EG  V I++ D+D  QL+S   +  L D       D++   +K+G+PPE+ V  
Sbjct: 125 AKKAEREGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +ALTGD  DNIPG+ GIG KTA  LL E+G++EN+L N  R+K    R  I  + E   L
Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLHL 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           S  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++
Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLH 285


>gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
 gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
          Length = 866

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 338/573 (58%), Gaps = 30/573 (5%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++ + I  + L+++  ++ +++ IFI+        +  +    +E +   K+FFENE  L
Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKAFKEFFENEDIL 375

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K G++IK     L + GI   G   D  L +Y++DS +  +++ S+   +LS        
Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYNLLSLINNYLS-------- 427

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                    K  + +  E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S 
Sbjct: 428 ---------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G ++++D+L ++S +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P  
Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    +PII+ I  +RQLSKI STY + L + I+     +H+ 
Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759
           ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI  P K+   LISADYSQIELR+LA
Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           HI+    +   F +  DIH   A+E+F V +E+V+P MR  AK +NF I+YGI  F L+ 
Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA +Y+  YF R+P I EYI K  +  +  GYV T+  RR +  E N+    +
Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           + + ER A+NAPIQG+AADI + AM++V+  L++  L +K++LQ+HDEL+  V + E+  
Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +++   ME      I L VPL V++ V  +W
Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+    R++    +    F
Sbjct: 3   RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII +  
Sbjct: 58  DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + + 
Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD  DNIPG+PG+G KTA  L++EYG++E +L N   I  KK +EN+ EY+E A 
Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237

Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289
            S+KL  + T+VPI   L+ +   +D N  +L +    L+   ++++++
Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286


>gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI
           polymerase 1
 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis]
          Length = 833

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 196/498 (39%), Positives = 303/498 (60%), Gaps = 33/498 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+++   +D +L++Y+LD   +  +   +A+++                        +
Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTHPE--GVARRY----------------------GGE 399

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A E + +  +L+  L P+L  EKLL +Y+ +++P+  V++ ME  G+++D  LL+ 
Sbjct: 400 FTEDAAERALLSERLFQNLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656
           +S E+ K +  LE  ++ L+G  FNL+S  QL  +LF +L   P G   KTG+ ++TAQ 
Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPFNLNSRDQLERVLFDELGLTPVGRTEKTGK-RSTAQG 517

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +   G +PI++ IL++R+LSK+KSTY D LP  ++ RT R+HT ++  +T TGRL+S 
Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IR+AF++     L++ADYSQIELR+LAH++    L +VF    D
Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA +FG++   V P+MRR AKT+NF ++YG+S  RL+ +L I   EA  +I+RYF
Sbjct: 638 IHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IE+T    R  GYVET+FGRR +  ++ S   S+R   ER A N P+QG+A
Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   L+   L   +LLQ+HDELV EVPE+    A  ++   ME A     
Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENAY---- 811

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL+V + V  +W E
Sbjct: 812 PLDVPLEVEVGVGRDWLE 829



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/284 (38%), Positives = 154/284 (54%), Gaps = 12/284 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDG    YR FYA  L + +  G PV  + GF   L K L+   +  +     V+
Sbjct: 12  KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++ T 
Sbjct: 65  FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              AE+EG  V I++ D+D  QL+S   +  L D       D++   +K+G+PPE+ V  
Sbjct: 125 AKKAEREGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +ALTGD  DNIPG+ GIG KTA  LL E+G++EN+L N  R+K    R  I  + E   L
Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLHL 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           S  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++
Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLH 285


>gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
           polymerase 1
 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
 gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
          Length = 831

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 192/497 (38%), Positives = 304/497 (61%), Gaps = 33/497 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++                        +
Sbjct: 361 REGLDLFPEDDPMLLAYLLDPSNTTPE--GVARRY----------------------GGE 396

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             E A E + +  +L+  L+ +L  E +LL +YE ++KP+  V+++ME TG+++D   L+
Sbjct: 397 WTEDAGERALLAERLFQTLKERLKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQ 456

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQ 655
            +S E+   +  LEE ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A 
Sbjct: 457 ALSLEVEAEVRQLEEEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 516

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +    +PI+  IL++R+L+K+K+TY D LP  ++ +T R+HT ++  +T TGRL+S
Sbjct: 517 VLEALREA-HPIVDRILQYRELTKLKNTYIDPLPALVHPKTGRLHTRFNQTATATGRLSS 575

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++T LGQ+IRRAF++     L+  DYSQIELR+LAH++    L +VF+   
Sbjct: 576 SDPNLQNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEGR 635

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+ +FGV+ E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RY
Sbjct: 636 DIHTQTASWMFGVSPEGVDPLMRRAAKTINFGVLYGMSAHRLSGELSIPYEEAVAFIERY 695

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P +  +IE T    R+ GYVET+FGRR +  ++N+   S+R   ER A N P+QG+
Sbjct: 696 FQSYPKVRAWIEGTLEEGRRRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGT 755

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AM+ +   L++  L  +MLLQ+HDELV E P++     + +    ME      
Sbjct: 756 AADLMKLAMVRLFPRLQE--LGARMLLQVHDELVLEAPKDRAERVAALAKEVMEGVW--- 810

Query: 956 INLRVPLKVNIKVSNNW 972
             L+VPL+V + +  +W
Sbjct: 811 -PLQVPLEVEVGLGEDW 826



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 159/311 (51%), Gaps = 30/311 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+          
Sbjct: 7   FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKED-----GDV 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ GFEADD+
Sbjct: 61  VVVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDV 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170
           +AT    AEKEG+ V I++ D+DL QL+S           E+I I H          + +
Sbjct: 121 LATLAKRAEKEGYEVRILTADRDLYQLLS-----------ERIAILHPEGYLITPAWLYE 169

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K+G+ PE+ V  +AL GD  DNIPG+ GIG KTA  L++E+G+LEN+  +  ++K    R
Sbjct: 170 KYGLRPEQWVDYRALAGDPSDNIPGVKGIGEKTAQRLIREWGSLENLFQHLDQVK-PSLR 228

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           E +    E   LSRKL  + TD+P+ +        +  G R  +FL+ LEF  L++    
Sbjct: 229 EKLQAGMEALALSRKLSQVHTDLPLEVDFGRRRTPNLEGLR--AFLERLEFGSLLHEFGL 286

Query: 291 TYDCDAANIEP 301
                AA   P
Sbjct: 287 LEGPKAAEEAP 297


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 200/520 (38%), Positives = 315/520 (60%), Gaps = 26/520 (5%)

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
           FE+++  KI H+IK   +VL +Y I  + F  D  + SY+L+  +S             Y
Sbjct: 384 FEDKNIKKISHDIKNVYVVLRKYDIDAKNFIFDTKIASYLLEPSKSD------------Y 431

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
             +EI+   K SI ID   DS  +E  I+ +  I +++  L+ ++    +  ++  ++ P
Sbjct: 432 ILREII-LEKLSINID---DSD-EECKIKETYCIKEIYEKLQKEIKEANMEELFYNVELP 486

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  V++ ME  G ++D+D L ++  +    +  LE+ I+ L+GE FN+ SPKQLG ILF 
Sbjct: 487 LTKVLASMECEGFKVDKDRLTEIGEKFKAEIKMLEKEIHKLAGEDFNIKSPKQLGKILFE 546

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL  P   KTKTG + T A+ LE++    +PII  I+++RQ++K+ STY + L  H+   
Sbjct: 547 KLDLPVIKKTKTG-YSTNAEVLEKLK-DSHPIISKIIDYRQITKLDSTYVEGLK-HVIDE 603

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ F++   + +I SADYSQIE
Sbjct: 604 DGKIHSSFNQTVTTTGRLSSTEPNLQNIPIKHEMGREIRKVFVANNEESVIFSADYSQIE 663

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LAHIA    L   F++  DIH + A+E+F V +E+V+P MR +AK +NF I+YGI  
Sbjct: 664 LRVLAHIANDEKLIDAFKHHKDIHTITASEVFRVPVEEVTPLMRSNAKAVNFGIVYGIGA 723

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F L+  + + R EA +YI  YF R+P + +YI+   N   Q+G+V TI  R+ +  EI S
Sbjct: 724 FSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDDIINKSEQDGFVTTIMNRKRYIPEIQS 783

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               +R+  ER A+N PIQGSAADI + AM+ V++ L    L + ++LQ+HDEL+  V +
Sbjct: 784 RNRIVRSFGERLAMNTPIQGSAADIIKLAMVHVYEELIKRNLKSTLILQVHDELILNVYK 843

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +E+    Q++V  ME      +NL VPL+ ++ +   W E
Sbjct: 844 DELEEVKQMVVEKMEGV----MNLLVPLEADVNIGITWYE 879



 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/299 (40%), Positives = 173/299 (57%), Gaps = 17/299 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++DG S +YRAF+A P L+ K +G+  NAI GF  ML K+     KE I  +
Sbjct: 1   MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKM-----KEEIKPN 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + VI FD  A TFR++ Y DYKA R K+P  L  Q P+V+       I   EI GFEADD
Sbjct: 54  YIVIAFDKKAPTFRHKEYEDYKAGREKMPSELNEQFPIVKDILNKLAINIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE +G  V I++ DKD +QL +    +    K    +E  D + +I+++ + 
Sbjct: 114 LIGTLSEFAEGKGIEVYIVTGDKDALQLATDNVKIVINKKGMSEKEIYDRKRMIEEYEVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++ L GD  DNIPG+PGIG KTA  L++EYG++EN+L N   I  KK ++N++E
Sbjct: 174 PTQFIDVKGLMGDKSDNIPGVPGIGTKTAFKLIKEYGSIENVLDNVENISGKKMKQNLIE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRVATT 291
           Y E A  S+KL  +  +VPI I LE +  +   D  G R     ++L F  LI  +  +
Sbjct: 234 YREQAIFSKKLATICKNVPIEIDLEEIKSKENYDIEGVR--QLFESLGFKTLIKNIDNS 290


>gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101]
 gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101]
          Length = 866

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 210/571 (36%), Positives = 336/571 (58%), Gaps = 26/571 (4%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++ + I  + L+++  ++ +++ IFI+        +  +    +E +  LK+FFENE  L
Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELAQEEENIKALKEFFENEDIL 375

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K G++IK     L + GI  +G   D  L +Y++DS +  + + S+   +LS        
Sbjct: 376 KNGYSIKNALTALKKLGIEFKGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                    K  + +  E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S 
Sbjct: 428 ---------KFPNVKDGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G ++++D+L ++S +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P  
Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    +PII+ I  +RQLSKI STY + L + I+     +H+ 
Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHI 761
           ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI      L ISADYSQIELR+LAHI
Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHI 655

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    +   F +  DIH   A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L
Sbjct: 656 SGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDL 715

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I R EA +Y+  YF R+P I EYI K  +  +  GYV T+  RR +  E N+    ++ 
Sbjct: 716 NISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKA 775

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           + ER A+NAPIQG+AADI + AM++V+  L++  L +K++LQ+HDEL+  V + E+    
Sbjct: 776 LGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVK 835

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +++   ME      I L VPL V++ V  +W
Sbjct: 836 KLLKEEMENT----IKLSVPLDVDVNVGEDW 862



 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+    R++    +    F
Sbjct: 3   RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII +  
Sbjct: 58  DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE EG  V II+ DKD +QL +    +  T K     E  + + +++++G+ P + + 
Sbjct: 118 KVAEGEGIEVYIITGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD  DNIPG+PG+G KTA  L++EYG++E +L N   I  KK +EN+ EY+E A 
Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237

Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289
            S+KL  + T+VPI   L+ +   +D N  +L +    L+   ++++++
Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286


>gi|332364060|gb|EGJ41837.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49]
          Length = 880

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 207/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ +H      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFKHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADG-KIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 AT 290
            T
Sbjct: 294 GT 295


>gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
 gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
          Length = 871

 Score =  353 bits (907), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 179/419 (42%), Positives = 270/419 (64%), Gaps = 7/419 (1%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           L  KL  E++  ++  ++ P++  +  ME  G++I+ + LK+   ++ + ++ LE  IY+
Sbjct: 458 LMEKLKEEQMDRLFLEIEMPLVFTLFDMEQAGVRIEAEELKKYGEQLGEQIVQLESEIYE 517

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           ++GE FN++SPKQLG ILF KL+ P   KTKTG + T A  LE++   + PI+  ILE+R
Sbjct: 518 MAGENFNINSPKQLGVILFEKLQMPHAKKTKTG-YSTAADVLEKL-APEFPIVDKILEYR 575

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           QL+K+KSTYAD L N+I     R+H  ++   T TGR++S EPNLQNIP++ +LG+ IR+
Sbjct: 576 QLTKLKSTYADGLANYIGP-DGRIHGTFNQTITATGRISSTEPNLQNIPVRMELGRLIRK 634

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F+       I ADYSQIELRILAH +    L Q +  + DIHRM A+++F    ++V+ 
Sbjct: 635 VFVPQEGYVFIDADYSQIELRILAHCSGDAHLIQAYREAQDIHRMTASQVFKTPFDEVTD 694

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR+AK +NF I+YGIS F L+  L I R EA+ YI+ YF  +PGI ++++ +    ++
Sbjct: 695 LQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASQYIESYFETYPGIKKFLDDSVTHAKE 754

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GY  T+FGRR    E+ S     RN  ER A+NAPIQG+AADI + AMI V++ L++ +
Sbjct: 755 EGYAVTLFGRRRPIPELKSSNFMQRNFGERVAMNAPIQGTAADIMKIAMIGVNRELKEKR 814

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + ++M+LQ+HDEL+ E   +EI T  +I+   ME A     +L VPL  +++V  NW E
Sbjct: 815 MKSRMILQVHDELLIETHPDEIETVKEILKRQMETAA----SLDVPLIADMQVGKNWYE 869



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 166/300 (55%), Gaps = 15/300 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NA+ GF N+L+K+L+  + E    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGVPDLTNA-EGLHTNAVYGFLNILFKILEEEKPE----YLTVTFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E++ DYK  R  + E L  Q+P+++   +A  I  IE  G EADD++ T + 
Sbjct: 60  VHAPTFRHEMFADYKGTRKPMAEELRQQVPVIKEVLKAMDIAIIEKAGLEADDLLGTISR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180
             E++G  V +IS D+D +QL +    +     K  + +IE      V +++ + P + +
Sbjct: 120 TCEEKGMEVAVISGDRDTLQLATEHVKIRIPKTKGGRTEIEDYYAADVKERYEVTPTEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GD+ DNIPG+PG+G KTA  ++ EYG+LEN   +   +K  +  +N+ E+ E A
Sbjct: 180 DVKALMGDTADNIPGVPGVGEKTATKIIVEYGSLENAYAHVEELKPPRASKNLKEFWEQA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +LS+ L  + T   +   LE     +       ++ + L+F  L+ +    +D +AA  E
Sbjct: 240 KLSKVLATIDTHAELEFSLEDAKHGNMFTKEAYTWFQKLQFKNLLGK----FDVEAAENE 295


>gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72]
          Length = 880

 Score =  353 bits (907), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 207/515 (40%), Positives = 307/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEKPMQEQLRAHNQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IY+L+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYNLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP  E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             Q++  +ME A    I L VPL  +      W E
Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 166/303 (54%), Gaps = 19/303 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ +N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLPQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQIETLSKFYDEMGFKQLKAQL 293

Query: 289 ATT 291
            T+
Sbjct: 294 GTS 296


>gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
 gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
          Length = 885

 Score =  353 bits (907), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 220/569 (38%), Positives = 332/569 (58%), Gaps = 25/569 (4%)

Query: 418 DDTSFKVETIFIDLSVHTSQD------STGKNTLTKEILSYLKK-----FFENEHFLKIG 466
           D+ SF +E    D + HTS        S G+  ++K++ S LK+     F EN++     
Sbjct: 324 DNASFYLE--LADENYHTSPFWGFALLSDGQCYVSKDV-SLLKREPLREFLENKNKTLDV 380

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
            + K   + L R GI     + D++L+SY+L++  +S+D+  + QK   +  K   +   
Sbjct: 381 FDGKKTYVSLKRLGIEAESIDFDLLLVSYLLNNTDNSNDLGQLCQKQGYFGVKSDDEVYG 440

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
                +  +D    EH       I  L   L  KL      H+Y  +++P+  V+++MEI
Sbjct: 441 KGAKKEICADETFFEHLRSKVFAIAFLKQKLMQKLKDNSQDHLYFEIERPLSIVLAKMEI 500

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+ D++ L+ + +   + +  LE  IY  +GE FN++SPKQLG ILF KL  P   KT
Sbjct: 501 AGIKADKETLETMGSRFKEKISDLESLIYQEAGETFNINSPKQLGTILFDKLGLPGAKKT 560

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T    LE++   D  I+ N+L +RQ +K+KSTY D L   ++ + ++VHT Y+ 
Sbjct: 561 KTG-YSTAVGVLEKLRGND--IVDNVLLYRQFAKLKSTYIDGLIKVMD-QDEKVHTRYTQ 616

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S+EPNLQNIP++ + G+KIR+AFI S    ++ S+DYSQIELR+LAHI+K 
Sbjct: 617 TLTTTGRLSSVEPNLQNIPVRLEEGRKIRQAFIPSHQGWEIFSSDYSQIELRVLAHISKD 676

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             + + F++  DIH   A +IFG++  ++V+P MRR AK +NF I+YGIS F LA  +  
Sbjct: 677 ENMQKAFKDDFDIHANTAMKIFGLSSPDEVTPNMRRQAKAVNFGIVYGISDFGLAQSIGC 736

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R +A  +++ YF  FPG+  Y+ +     R  GYVET+F RR + + I S   + R+  
Sbjct: 737 RRDQAKTFMETYFESFPGVKRYMTEIVELARNQGYVETLFKRRRYLEGIRSKNFNQRSFA 796

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N PIQGSAADI + AMI + ++LE  +L  +MLLQ+HDEL+FE PEEEI    ++
Sbjct: 797 ERTAMNTPIQGSAADIIKVAMIKMQETLEKEELKARMLLQVHDELIFEAPEEEIPVLEKL 856

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +   M+ A    + L VPLKV       W
Sbjct: 857 VPSVMDSA----VKLDVPLKVESGHGKTW 881



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 174/320 (54%), Gaps = 14/320 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M ++  L L+DG+S  +R FYA  + + +   HDGL  +A+  F  ML K+L +   + I
Sbjct: 1   MTEKQKLLLIDGNSITFRGFYALFMQTERFVNHDGLHTSAVFSFKRMLDKILDDVNPDKI 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR E Y DYKA R K PE L  Q P V+     +GI   E++ +EA
Sbjct: 61  L----VAFDAGKKTFRTEKYSDYKAGRKKTPEELSEQFPYVKKLLDCYGIKHYELKNYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T +  AEK G+  TI++ D+DL QLV+  T +  TVK     E     H+ +K G
Sbjct: 117 DDIIGTMSKEAEKHGYETTIVTGDRDLTQLVTNQTTVALTVKGVTEIEYYTPNHLSEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P ++  L+ L GD+ DN PG+  +G KTA  LL +YG +EN+  +    K+ K +E++
Sbjct: 177 ISPSQITDLKGLAGDASDNYPGVSKVGEKTALKLLNQYGTIENLYEHIDEFKKSKMKEHL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +E  E A   + L  +R D P+ I L  +     N  +L  F ++++F K ++ +     
Sbjct: 237 IEDKEIALTCKNLATIRRDAPLEIGLADIDFAGKNIEKLREFYQSMDFHKFLSELNAEKS 296

Query: 294 CDAANIE--PVVLDINTTEN 311
            + +N E  P ++++ T EN
Sbjct: 297 EEVSNEEELPSIVEL-TFEN 315


>gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14]
          Length = 871

 Score =  353 bits (906), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 179/420 (42%), Positives = 268/420 (63%), Gaps = 7/420 (1%)

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           +L  KL    +  ++  ++ P++  +  ME  G++++ + LK+   E+   ++ LE+ IY
Sbjct: 457 VLEKKLEENGMFCLFNEIEMPLVFTLYDMEQAGVKVEGEELKRYGEELGARIVELEKEIY 516

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           +++GE+FN++SPKQLG ILF KL+ P   KTKTG + T A  L+++   + PI+  ILE+
Sbjct: 517 EMAGEEFNINSPKQLGVILFEKLEMPHAKKTKTG-YSTAADVLDKL-APEYPIVAKILEY 574

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQL+K+KSTYAD L N+I     R+H+ ++   T TGR++S EPNLQNIP++ +LG+ IR
Sbjct: 575 RQLAKLKSTYADGLANYIG-MDGRIHSKFNQTITATGRISSTEPNLQNIPVRMELGRLIR 633

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           + F+       + ADYSQIELRILAH +    L Q +  + DIHRM A+++F V  ++V+
Sbjct: 634 KVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVT 693

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              RR+AK +NF I+YGIS F L+  L I R EAA YI+ YF  +PGI  +++K  +  +
Sbjct: 694 DLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQYIEHYFESYPGIKTFLDKCVSDAK 753

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           + GY ET++GRR    E+ S     R+  ER A+NAPIQG+AADI + AMI V++ L+  
Sbjct: 754 EKGYAETLYGRRRPMPELKSSNFMQRSFGERVAMNAPIQGTAADIIKIAMIHVNEELKKR 813

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            L ++M+LQ+HDEL+ E  E E+    QI+   ME A      L VPL V++    NW E
Sbjct: 814 NLKSRMILQVHDELLIEADETELEEVQQILQDKMEHAA----ELLVPLSVDMHTGKNWYE 869



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 171/299 (57%), Gaps = 15/299 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L   + E    +  V 
Sbjct: 3   DKIVLIDGHSILNRAFYGVPDLTNS-EGLHTNAVYGFLNIMFKILDEEKPE----YLTVT 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+E++ DYK  R  + E L  Q+P+++   +A  I  IE  G EADD++ T 
Sbjct: 58  FDVHAPTFRHEMFADYKGTRKPMAEELRQQVPVIKDVLRAMHIEVIEKAGLEADDLLGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-DTVKEEKIDIEH-----VIKKWGIPPEK 178
           ++  E++G  V+IIS D+D +QL +    +     K+ K ++E      V +++G+ P++
Sbjct: 118 SHRCEEKGMDVSIISGDRDTLQLATEHIKIRIPKTKQGKTEVEDYYAADVQERYGVTPKE 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GD+ DNIPG+PG+G KTA  ++Q+Y  +EN   +   +K  +  +N+ E+ E
Sbjct: 178 FIDVKALMGDTADNIPGVPGVGEKTATKIIQQYQTIENAYEHVDELKPPRASKNLKEFWE 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A+LS+ L  ++ D  IT  LE+   E+          + LEF  L+ R    +D +A+
Sbjct: 238 QAQLSKTLATIKLDADITFELENARHENPYTKEAHELFQRLEFKNLLGR----FDVEAS 292


>gi|332364956|gb|EGJ42724.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK355]
          Length = 880

 Score =  353 bits (906), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 206/515 (40%), Positives = 309/515 (60%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       ++ EH      V+L+    +  +L     L++   +++P+  V++
Sbjct: 433 KGAKRALP----EQERLFEHLARKVQVLLETEEPMLEQLRAHDQLNLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I   + ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADS-KIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    I L VPL  +      W E
Sbjct: 848 VRKLVKATMEAA----IELAVPLVADENAGQTWYE 878



 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 167/305 (54%), Gaps = 19/305 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLAQ 113

Query: 115 FEADDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTVVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVENLSKFYDEMGFKQLKAQL 293

Query: 289 ATTYD 293
            T  D
Sbjct: 294 GTAQD 298


>gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
 gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
          Length = 1072

 Score =  353 bits (906), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 194/491 (39%), Positives = 290/491 (59%), Gaps = 21/491 (4%)

Query: 488  DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            D+ L +Y+LD  R+ + +   A+++  +  +E         P D+  D  V   ++   +
Sbjct: 591  DLKLAAYLLDPVRNRYHLVDTARQFFGWDLEEG--------PADRPGDPAVCTSSLLGRD 642

Query: 548  VILQLWLLLRP----KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
              L     LRP    +L    L  VY  ++ P++ V++ ME  GI +D+  L+++    +
Sbjct: 643  AAL--CARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFT 700

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            +    L E IY+L+G+ FN++S +QLG ILF +L  P   KTKTG + T A+ LE +   
Sbjct: 701  RRSQELAEQIYELAGQTFNINSTQQLGQILFERLGLPVVKKTKTG-YSTDAEVLETLAA- 758

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             +PI + +LE+R L K++ TY D L  HI     R+HT +      TGRL+S +PNLQNI
Sbjct: 759  RHPIAELVLEYRSLVKLQGTYVDGLAEHIGP-DGRIHTTFQQTVAATGRLSSTQPNLQNI 817

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+ + G+ +RRAF++PP  +L++ADYSQIELR+LAH +    L + F    D+H   A+
Sbjct: 818  PIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDPGLVEAFAQGQDVHARTAS 877

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            EIFGV +E+V+P+ RR AK +NF + YG + F LA  LRI R++A  +++RYF R+PG+ 
Sbjct: 878  EIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDFGLARALRIDRADARRFMERYFERYPGVK 937

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             Y+E+T    RQ G V T+ GRR    EI      IR   ER AIN PIQG+AADI + A
Sbjct: 938  RYMEETVRRARQQGEVTTLLGRRRPVPEIRHRVFHIRQNAERVAINTPIQGTAADIMKLA 997

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            MI VH++L +  L  +++LQ+HDEL+ E P+ E+   + ++   ME A      L VPL 
Sbjct: 998  MIRVHRALAEEGLRARIVLQVHDELLVEAPDAEVAAVAALLRREMEGA----FRLDVPLV 1053

Query: 964  VNIKVSNNWQE 974
            V +K   NW E
Sbjct: 1054 VEVKSGANWYE 1064



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/294 (38%), Positives = 165/294 (56%), Gaps = 12/294 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q E+ L L+DG S +YRAF+A P L+   DGLP NA+ GF  ML +LL+  R       +
Sbjct: 73  QLEDKLVLIDGHSLMYRAFFALPPLT-TADGLPTNAVYGFLTMLLRLLEEER-----PRY 126

Query: 62  AVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           AV+ FD     FR E Y  YK +RP+ P+ L  Q P+V+    A GIP +E  G+EADD+
Sbjct: 127 AVVAFDRGLPAFRVERYAAYKGHRPETPDDLRSQFPVVKEILAALGIPMVEHDGYEADDL 186

Query: 121 IATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           + T    A + G   V +++ D+D++QLV     +  T +      + D   + ++ GI 
Sbjct: 187 LGTLARRAREAGVGRVLLVTGDRDVLQLVGDGIEVLLTRRGISDVHRYDAARIREEMGID 246

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++AL GD  DNIPG+PGIG KTA  L+Q+ G+LE++L N      KK  + + E
Sbjct: 247 PAQYLDVKALMGDPSDNIPGVPGIGEKTALKLIQQLGDLESVLANPEAAGGKKLPQALQE 306

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           YA+ ARLSR L  +RTD P+    +       +   L   L  LEF  L++R+ 
Sbjct: 307 YADQARLSRDLARIRTDAPVDFDPQRWCRRPADAGLLRPLLLRLEFRSLLDRLG 360


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score =  353 bits (906), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 199/497 (40%), Positives = 304/497 (61%), Gaps = 33/497 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R GI++   +D ML++Y+LD   ++ +   +A+++                        +
Sbjct: 360 REGIALAPGDDPMLLAYLLDPSNTAPE--GVARRY----------------------GGE 395

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             E A E + +  +L+  L  +L  E +LL +YE ++KP+  V++ ME TG+++D   LK
Sbjct: 396 WTEEAGERALLSERLYAALLERLKGEERLLWLYEEVEKPLSRVLAHMEATGVRLDVAYLK 455

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQ 655
            +S E+   L  LEE ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A 
Sbjct: 456 ALSLEVEAELRRLEEEVHRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 515

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +    +PI+  IL++R+LSK+K TY D LP  ++ +T R+HT ++  +T TGRL+S
Sbjct: 516 VLEALREA-HPIVDRILQYRELSKLKGTYIDPLPALVHPKTNRLHTRFNQTATATGRLSS 574

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++T LGQ+IRRAF++    +L+  DYSQIELR+LAH++    L +VF+   
Sbjct: 575 SDPNLQNIPVRTPLGQRIRRAFVAEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEGQ 634

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+ +FGV  E V   MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RY
Sbjct: 635 DIHTQTASWMFGVPPEAVDSLMRRAAKTINFGVLYGMSAHRLSGELAIPYEEAVAFIERY 694

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P +  +IEKT    R+ GYVET+FGRR +  ++ S   SIR   ER A N P+QG+
Sbjct: 695 FQSYPKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGT 754

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AM+ +   L++  L  +MLLQ+HDELV E P+E+    +Q    +ME+     
Sbjct: 755 AADLMKLAMVKLFPRLQE--LGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEVW--- 809

Query: 956 INLRVPLKVNIKVSNNW 972
             L+VPL+V + +  +W
Sbjct: 810 -PLKVPLEVEVGIGEDW 825



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 162/301 (53%), Gaps = 9/301 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      I   
Sbjct: 5   FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALREDGDVVI--- 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR++ Y  YKA R   PE    QL L++      G+  +E+ GFEADD+
Sbjct: 61  --VVFDAKAPSFRHQTYEAYKAGRAPTPEDFPRQLALIKEMVDLLGLERLEVPGFEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    AEKEG+ V I++ D+DL QL+S    +    +   I  E + +K+G+ P + V
Sbjct: 119 LATLAKKAEKEGYEVRILTADRDLYQLLSERISILHP-EGYLITPEWLWEKYGLKPSQWV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+ GIG KTAA L++E+G+LEN+L +  ++K    RE IL + E  
Sbjct: 178 DYRALAGDPSDNIPGVKGIGEKTAAKLIREWGSLENLLKHLEQVKPASVREKILSHMEDL 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +LS +L  + TD+P+ +        D  G  L +FL+ LEF  L++         AA   
Sbjct: 238 KLSLELSRVHTDLPLQVDFARRREPDREG--LKAFLERLEFGSLLHEFGLLESPVAAEEA 295

Query: 301 P 301
           P
Sbjct: 296 P 296


>gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028]
          Length = 876

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 316/529 (59%), Gaps = 21/529 (3%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
           +L ++ E+++  KI ++ K   +  HR GI++   E D+ML SY++D  RS  D+ S+  
Sbjct: 357 HLVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVS 416

Query: 511 KW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +  +Y +  I    K +K  IP + I    + EH    +  I  +   ++ +L      
Sbjct: 417 LYGQNYVKDNITIFGKGKKHHIPEEPI----LNEHIASVTEAIAAVTPTMKSQLEDYNQN 472

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            + + L+ P+  ++S+ME  GI  D + LK++  EI K L  L  NI++ +GE FN++SP
Sbjct: 473 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 532

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG +LF  L+ P   KTKTG + T    LE++  G++PII +ILE+RQL+K++STY +
Sbjct: 533 KQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLAKLQSTYVE 590

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L   I+K   R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT K  
Sbjct: 591 GLQKVISK-DHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSKDS 647

Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            ++SADYSQIELR+LAHI +   L   F N  DIH   A ++F V  ++V   MRR AK 
Sbjct: 648 VILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKA 707

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  GYVET+ 
Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLL 767

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+   + +++ K   K+LLQ
Sbjct: 768 HRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQ 827

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE+P+ E+   S+ +   ME+A +    L VPLKV+      W
Sbjct: 828 VHDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 165/295 (55%), Gaps = 15/295 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K++    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A++E F   II+ D+DL QL +    +Y T K+   D++H   K+      G+ P++
Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPKFIAEKYNGLVPKQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++ ++E +  +   +  KK +E ++   +
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 235

Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A +S+ L  +    PI + LE   L L+D +  + I   K LEF +L+  + T+
Sbjct: 236 DALMSKDLATINVHSPIEVSLEDTKLTLQD-DTTKKIELFKKLEFKQLLADIDTS 289


>gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87]
 gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87]
          Length = 887

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 210/536 (39%), Positives = 319/536 (59%), Gaps = 37/536 (6%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI--- 508
           L ++ E+++ +K  ++ K   +  HR  I ++  + D+ML SY++D  RS  D+ S+   
Sbjct: 369 LVQWLEDKNTIKTVYDAKKTYVAAHRLNIDIQNVQFDVMLSSYIIDPSRSIDDVKSVVSL 428

Query: 509 -AQKWLSYTRKEILKSRKSSIPIDKISDSQVQE--HAIENSNVILQLWLLLRPKLIVEKL 565
             Q ++        K +K  +P +++ +  V     AI NS          +P++  E  
Sbjct: 429 YGQNYVKDNVSVYGKGKKHQVPEEEVLNKHVASITEAIANS----------KPEM--EAQ 476

Query: 566 LHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L  Y +      L+ P+  ++S+ME  GI  D + LKQ+  EI + L  L +NI++ +GE
Sbjct: 477 LEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDLKQMENEIQEKLDVLIKNIHEAAGE 536

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SPKQLG +LF  LK P   KTKTG + T    LEQ+  G++PII++ILE+RQLSK
Sbjct: 537 EFNINSPKQLGVVLFETLKLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIEHILEYRQLSK 594

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           ++STY + L   I+K  QR+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF  
Sbjct: 595 LQSTYVEGLQKVISK-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAF-- 651

Query: 740 PPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            PT K   ++SADYSQIELR+LAHI +   L + F N  DIH   A ++F V   +V   
Sbjct: 652 KPTDKDSVILSADYSQIELRVLAHITQDESLKEAFINGNDIHTATAMKVFNVEANEVDSL 711

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  
Sbjct: 712 MRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAE 771

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYVET+  RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+  ++ ++D   
Sbjct: 772 GYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFYEKVKDTNY 831

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              +LLQ+HDEL+FE+P+ E+   S+ +   ME+A    ++L VPLKV+      W
Sbjct: 832 HATLLLQVHDELIFELPKSEVEDFSKFVEEIMEQA----LDLDVPLKVDSSYGPTW 883



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 168/301 (55%), Gaps = 13/301 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLLS K  G+  NAI GF  +L K++    KE   +HF V 
Sbjct: 13  DKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAIYGFAMLLEKII----KEEQPNHFLVA 67

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 68  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKHYELENYEADDIIGTL 127

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P++
Sbjct: 128 SREADKAGFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPSFIAEKYDGLQPKQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL+++ ++E +  +   +  KK +E ++   +
Sbjct: 187 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLKQFTSVEGVYEHIDDVTAKKLKEKLVNSKD 246

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S+ L  +  + PI + L    LE+  +    I   K LEF +L+  +    + D  
Sbjct: 247 DALMSKDLATINVESPIEVTLNDTKLENQDDNTNKIELFKKLEFKQLLADIDEEANNDVV 306

Query: 298 N 298
           N
Sbjct: 307 N 307


>gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
 gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
          Length = 866

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 337/573 (58%), Gaps = 30/573 (5%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++ + I  + L+++  ++ +++ IFI+        +  +    +E +   K+FFENE  L
Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEDIL 375

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K G++IK     L + GI   G   D  L +Y++DS +  + + S+   +LS        
Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                    K  + +  E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S 
Sbjct: 428 ---------KFPNVKDGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G ++++D+L ++S +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P  
Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    +PII+ I  +RQLSKI STY + L + I+     +H+ 
Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759
           ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI  P K+   LISADYSQIELR+LA
Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           HI+    +   F +  DIH   A+E+F V +E+V+P MR  AK +NF I+YGI  F L+ 
Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA +Y+  YF R+P I EYI K  +  +  GYV T+  RR +  E N+    +
Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           + + ER A+NAPIQG+AADI + AM++V+  L++  L +K++LQ+HDEL+  V + E+  
Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +++   ME      I L VPL V++ V  +W
Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862



 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+    R++    +    F
Sbjct: 3   RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII +  
Sbjct: 58  DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + + 
Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD  DNIPG+PG+G KTA  L++EYG++E +L N   I  KK +EN+ EY+E A 
Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237

Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289
            S+KL  + T+VPI   L+ +   +D N  +L +    L+   ++++++
Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 209/533 (39%), Positives = 319/533 (59%), Gaps = 15/533 (2%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507
           +LS LK   EN      GHN KYD  VL  + IS+     D +L SY+L+S +  H +  
Sbjct: 366 VLSQLKPLLENPSIGFYGHNFKYDYHVLRNHNISVANISFDTILASYLLNSHKRQHSLDH 425

Query: 508 IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +A +     +   +E++   K+ + +  ++  ++  +  E+ +  ++L  +L  +L   K
Sbjct: 426 LALELFDKVKIAIQELIGKGKNQLNMKNVALDKICHYCCEDVDYTIRLKNILLSQLEERK 485

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +   L+ P++ V++QME  GI ID   LK +S  I + +  LE+NIY L+GE FNL+
Sbjct: 486 LTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNIYALAGEIFNLN 545

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQL  ILF KL      K  TG   T A+ LE +     PI + +LE+R L K++STY
Sbjct: 546 SPKQLSQILFHKLGIKPPKKIATGH-STNAEVLEILK-HVYPIAEKLLEYRTLEKLRSTY 603

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            +SLP  +N +T R+H  ++ +   TGRL+  +PNLQNIP++T++G++IR AF   P K+
Sbjct: 604 VNSLPLQVNAKTGRIHCNFNQSMAATGRLSCQDPNLQNIPVRTEVGRQIREAF--RPEKE 661

Query: 745 ---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               +SADYSQIELR+LAH+++   L + F ++ DIH+  A+ IF V +++VS + R  A
Sbjct: 662 DWSYLSADYSQIELRLLAHLSEDPVLIKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQA 721

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF +IYG   F LA +L I    AA +I+RYF R+  + E++E  K   R+ G   T
Sbjct: 722 KAVNFGLIYGQQAFGLAHELGIDTKTAAAFIQRYFERYGKVKEFLEACKQSARETGKAVT 781

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           ++GR     EI S  + IR   +R A+N PIQG+ AD+ + AM+ ++K L   K    M+
Sbjct: 782 MYGRERLLPEIRSQNAMIRATADRFAVNTPIQGTQADLIKMAMLKINKLLIQEKKKGFMI 841

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQIHDEL+FEVP +E+ + S ++ ++ME      INL+VPL VNI +  NW+E
Sbjct: 842 LQIHDELIFEVPNQELESISHLVKNTMENI----INLKVPLIVNIHIGKNWKE 890



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 154/284 (54%), Gaps = 7/284 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+++D S +IYR+++A   ++    G   NA+ GF   + KL+    K+   +H   +FD
Sbjct: 4   LYILDASGYIYRSYFAIRQMTNAR-GESTNALFGFIRSVLKLI----KDFNPTHLVAVFD 58

Query: 67  YPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P  +  R E+YP YKA+R ++P+ LL Q+   +   Q  GIP + + G EADD + +  
Sbjct: 59  GPNNSQKRTELYPAYKAHRKEMPKDLLYQILWSQRFCQLMGIPELMVPGVEADDTMGSIA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184
             A        I ++DKD+ QLVS    + +T K+  I D   V +++G+ P +M+   A
Sbjct: 119 KWAATLNTTAYICTSDKDMCQLVSNQILILNTFKDNLIIDANGVKEQFGVMPAQMIDYLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + GD+ DNIPG+ G G KTAA LL+++G+L+ IL +   +  KK+++ ++   E   LS+
Sbjct: 179 IIGDASDNIPGLTGFGPKTAADLLEKFGSLDYILEHPLEVSGKKKQDTLISEKEKVLLSK 238

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           KLV++ T V      +   L       L  F   + F+ LI  +
Sbjct: 239 KLVIVDTTVSFPNQEDFFKLTSPAYQSLKEFYAEMNFSSLIREL 282


>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
          Length = 833

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/498 (39%), Positives = 303/498 (60%), Gaps = 33/498 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+++   +D +L++Y+LD   ++ +   +A+++                        +
Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTNPE--GVARRY----------------------GGE 399

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A E + +  +L+  L P+L  EKLL +Y+ +++P+  V++ ME  G+++D  LL+ 
Sbjct: 400 FTEDAAERALLSERLFQNLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656
           +S E+ K +  LE  ++ L+G  FNL+S  QL  +LF +L   P G   KTG+ ++TAQ 
Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPFNLNSRDQLERVLFDELGLTPVGRTEKTGK-RSTAQG 517

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +   G +PI++ IL++R+LSK+KSTY D LP  ++ RT R+HT ++  +T TGRL+S 
Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IR+AF++     L++ADYSQIELR+LAH++    L +VF    D
Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA +FG++   V P+MRR AKT+NF ++YG+S  RL+ +L I   EA  +I+RYF
Sbjct: 638 IHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IE+T    R  GYVET+FGRR +  ++ S   S+R   ER A N P+QG+A
Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   L+   L   +LLQ+HDELV EVPE+    A  ++   ME       
Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENTY---- 811

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL+V + V  +W E
Sbjct: 812 PLDVPLEVEVGVGRDWLE 829



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/284 (38%), Positives = 155/284 (54%), Gaps = 12/284 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDG    YR FYA  L + +  G PV  + GF   L K L+   +  +     V+
Sbjct: 12  KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++ T 
Sbjct: 65  FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              AE+EG  V I++ D+D  QL+S   +  L D       D++   +K+G+PPE+ V  
Sbjct: 125 AKKAEREGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +ALTGD  DNIPG+ GIG KTA  LL E+G++EN+L N  R+K    R  I  + E  RL
Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSVRRKIEAHLEDLRL 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           S  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++
Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLH 285


>gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
 gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
          Length = 875

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 178/420 (42%), Positives = 273/420 (65%), Gaps = 7/420 (1%)

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           LL  KL   ++LH++E ++ P++  +  ME  GI+ + + LK  S+++   +  LE+ IY
Sbjct: 461 LLYKKLEETQMLHLFEDIEMPLVFTLYDMERNGIRAEGEALKVYSSQLGGRISELEKEIY 520

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           +++GE FN++SPKQLG ILF KL  P   KTK+G + T A  L+++   D PI+  +LE+
Sbjct: 521 EMAGESFNINSPKQLGVILFEKLLLPGSKKTKSG-YSTAASVLDKL-APDYPIVSKVLEY 578

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQL+K+KSTYAD L N+I +   R+H+ ++   T TGR++S EPNLQNIP++ +LG+ IR
Sbjct: 579 RQLTKLKSTYADGLVNYI-EEDGRIHSKFNQTITATGRISSTEPNLQNIPVRVELGRLIR 637

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           + F+       + ADYSQIELR+LAH +    L + +    DIHR+ A+++F +  E+V+
Sbjct: 638 KVFVPEDGYIFVDADYSQIELRVLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEEVT 697

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           P  RR+AK +NF I+YGIS F L+  L I R EAA YI+ YF  +PGI  +++ T    +
Sbjct: 698 PLQRRNAKAVNFGIVYGISSFGLSEDLSIGRKEAAKYIEDYFKTYPGIKTFLDDTVAHAK 757

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           + GYV T+FGRR    E++S     R+  ER A+NAPIQG+AADI + AMI V++ L++ 
Sbjct: 758 EMGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNAPIQGTAADIMKIAMIGVNRRLKEQ 817

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            L ++++LQ+HDEL+ E    E+    +I+   ME+A     +L VPL++++    NW E
Sbjct: 818 NLKSRLVLQVHDELLIEAYRPELPEVEKILREEMEQAA----SLDVPLEIDMHTGENWYE 873



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 157/291 (53%), Gaps = 11/291 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAF+  P L+   +GL  NAI GF  +++K+L   + +    +  V FD
Sbjct: 9   IVLIDGHSILNRAFFGLPDLTNS-EGLHTNAIYGFLTIMFKILDEEKPD----YLTVAFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y  YK  R  + + L  Q+P+++    + GI  IE  G EADD++ T + 
Sbjct: 64  VHAPTFRHKMYDAYKGTRKPMADELRQQVPVIKEVLCSMGIKTIECAGLEADDLLGTLSR 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPEKMV 180
             E+EG  V++IS D+DL+QL +    +     K+ + ++E      V +++ + P++ +
Sbjct: 124 RCEEEGMEVSVISGDRDLLQLATQHVKIRIPKTKQGRTEVEDYYAADVKERYQVTPKEFI 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+P IG KTA  ++ EY ++EN   + S +K  +  + + E+   A
Sbjct: 184 DLKALMGDTADNIPGVPSIGEKTATKIITEYHSIENAYEHVSELKPPRASKALAEHWNMA 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +S+ L  +         L    L +       +F + L+F  L+++   T
Sbjct: 244 VMSKTLATIEVHADFPYELSEAKLGNIFTEEAYAFFQKLQFKNLLSKFDVT 294


>gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
 gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
          Length = 934

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 301/517 (58%), Gaps = 28/517 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           K  H++K    +LH  G   RG E      D+ML SY+++    SH +A +A +      
Sbjct: 438 KTTHDLKS---LLHTAG--QRGLEIANVAHDVMLYSYLINPTHGSHKLADVAARM----- 487

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  +S  P+ K + +       E ++ I +L   LR +    +LL  YE +D P++
Sbjct: 488 ------GQSITPLVK-NQTPPATALPEAASAIHRLAPALRIQAEEGELLKPYEEIDLPLV 540

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+ +ME  G +ID  +L+ +S++++ ++ +L E IY +SG +FN++SPKQLGD+LF K+
Sbjct: 541 PVLLRMEQVGCRIDSQVLRDMSSKLAVDMDALAERIYAMSGHRFNINSPKQLGDVLFNKM 600

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
             P   K   G+  +TAQD+ +     +     +LE+RQL+K++S Y + LP  +  R  
Sbjct: 601 DLPKPMKYGKGKVVSTAQDVLEELAAHHEAPALVLEYRQLAKLRSNYTEQLP-QLADREG 659

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVHT ++   T TGRL+S  PNLQNIP +T LG++IR AFI      L+SADYSQIELR+
Sbjct: 660 RVHTTFNQVGTATGRLSSTNPNLQNIPTRTALGREIRAAFIPAEGNVLLSADYSQIELRL 719

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH ++   L   +    DIH + AAE+F V+ E +  + R  AK +NF I+YGISPF L
Sbjct: 720 MAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIVYGISPFGL 779

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A QL IP+ EA  YI+RY  R+ G+  +IE+T +  R  G V T+FGR     +I S   
Sbjct: 780 AAQLGIPQGEAKLYIERYRERYAGVTAFIERTISDTRSTGKVSTLFGRTRPIPDIGSRNP 839

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           + R   ER A+N P+QG+AAD+ + AM+ +  +L + KLAT+M LQ+HDEL+F+ P  E 
Sbjct: 840 NQRGFAERTAVNTPLQGTAADMIKIAMLKIDAALTERKLATRMTLQVHDELLFDAPVGET 899

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              + ++   ME      ++L +P+   +    NW++
Sbjct: 900 EEVAALVKLEMEGV----VSLSIPIVAEVGKGPNWRD 932



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/319 (33%), Positives = 173/319 (54%), Gaps = 32/319 (10%)

Query: 7   LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++L+D  +F++RA++A     P+ +R   G+P  A   F NM+ KL    R++    + A
Sbjct: 9   VYLLDTMAFVFRAYHAMQRSRPMSTRT--GIPTAATYVFVNMINKL----RRDFAPHYLA 62

Query: 63  VIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLVRLA 101
            I++  A   RNE+                     Y  YKANR + P  L  Q P +R A
Sbjct: 63  AIYEGGAPVHRNELAAEMKTMRKFNIKTQQFDEVDYLGYKANRSETPPDLEQQQPYIRRA 122

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
            +AF IP +  +G+EADD+I T +    ++G  V ++S+DKD+MQLV+    + + +K+ 
Sbjct: 123 LEAFRIPILSYEGYEADDVIGTLSCRLAEQGHHVYVVSSDKDMMQLVNENVSILNPMKDN 182

Query: 162 KI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
            I D   V +  G+PP ++V + AL GDSIDNIPG PGIG K +  L+Q +G++EN L  
Sbjct: 183 LILDPAKVEEVLGVPPRQVVDVMALRGDSIDNIPGAPGIGDKGSVELIQAFGSVENALDK 242

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           A+ +K+K +RE++    E   LS++L  +  ++P+   LE +   +     L +    LE
Sbjct: 243 AADVKKKTQRESLQNNREMVLLSKELATIHCNLPMEFSLEDMTTTEPEPVLLRALFSELE 302

Query: 281 FTKLINRVATTYDCDAANI 299
           FT L+  +A     + AN+
Sbjct: 303 FTTLLKELAPPATAEKANL 321


>gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
 gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
          Length = 880

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 210/517 (40%), Positives = 309/517 (59%), Gaps = 21/517 (4%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEEPMKDQLRSHDQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF--TKLKF 639
           +MEI GI+++++ L+ +  E  K L SL + IYDL+G++FN++SPKQLG ILF    L  
Sbjct: 489 KMEIAGIKVERETLQGMQVENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLSL 548

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTG   +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++
Sbjct: 549 EYTKKTKTGY--STAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKI 605

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRIL 758
           HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+L
Sbjct: 606 HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVL 665

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRL 817
           AHI++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L
Sbjct: 666 AHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDRRNAKAVNFGVVYGISDFGL 725

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A  L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   
Sbjct: 726 ANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNF 785

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           +IRN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+
Sbjct: 786 NIRNFAERTAINSPIQGSAADILKVAMINLDRALTEENFKSRMLLQVHDEIVLEVPNDEL 845

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           T   Q++  +ME A    I L VPL  +      W E
Sbjct: 846 TAVRQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 165/302 (54%), Gaps = 19/302 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R      GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLSHLGIHYYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVETLSKFYDEMGFKQLKAQL 293

Query: 289 AT 290
            T
Sbjct: 294 GT 295


>gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
 gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
          Length = 866

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 337/573 (58%), Gaps = 30/573 (5%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++ + I  + L+++  ++ +++ IFI+        +  +    +E +   K+FFENE  L
Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKAFKEFFENEDTL 375

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K G++IK     L + GI   G   D  L +Y++DS +  + + S+   +LS        
Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                    K  + +  E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S 
Sbjct: 428 ---------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G ++++D+L ++S +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P  
Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    +PII+ I  +RQLSKI STY + L + I+     +H+ 
Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759
           ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI  P K+   LISADYSQIELR+LA
Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           HI+    +   F +  DIH   A+E+F V +E+V+P MR  AK +NF I+YGI  F L+ 
Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA +Y+  YF R+P I EYI K  +  +  GYV T+  RR +  E N+    +
Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           + + ER A+NAPIQG+AADI + AM++V+  L++  L +K++LQ+HDEL+  V + E+  
Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +++   ME      I L VPL V++ V  +W
Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862



 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+    R++    +    F
Sbjct: 3   RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII +  
Sbjct: 58  DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + + 
Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD  DNIPG+PG+G KTA  L++EYG++E +L N   I  KK +EN+ EY+E A 
Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237

Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289
            S+KL  + T+VPI   L+ +   +D N  +L +    L+   ++++++
Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286


>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88]
 gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88]
          Length = 882

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/522 (37%), Positives = 318/522 (60%), Gaps = 27/522 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK  FE E    + H++K   + L +  +   +   D+ + +Y++DS +S +D++++ Q+
Sbjct: 382 LKTIFEKEAVRVVSHDVKVLSMALKKLDVEFTKALFDLKIAAYLIDSSKSDYDLSTLIQE 441

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            LS    +I+K                +E  I  ++++ +L   L+ ++I  ++  +Y  
Sbjct: 442 CLS----KIVKDD--------------EEREIRETSLLEKLCANLKEQIINLEMEKLYYE 483

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V++ ME+ G ++D ++L+ +  ++ + +  +++ IY+L+ E+FN++SPKQLG 
Sbjct: 484 VELPLAFVLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIYELADEEFNVNSPKQLGK 543

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL  P   KTKTG + T AQ LE +    +PII  I  +RQL+K+ STY + L N 
Sbjct: 544 ILFEKLDLPVIKKTKTG-YSTNAQVLEVLE-DKHPIISKIGYYRQLTKLYSTYVEGLKNV 601

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADY 750
           I++   R+H+ ++   T TGRL+S EPNLQNIPIK ++G+++R+ F+      +I SADY
Sbjct: 602 IDE-DGRIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREVRKVFVPNYENSIILSADY 660

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LAHIA    L   F++  DIH   A+E+F V I++V+  MR +AK +NF I+Y
Sbjct: 661 SQIELRVLAHIADDENLINAFKHHADIHTKTASEVFKVPIDEVTVNMRGNAKAVNFGIVY 720

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GI  F LA  L+I R EA  YI  YF R+P + +Y+++T +  +++ YV TI  RR    
Sbjct: 721 GIGDFSLAKDLKISRKEAKGYIDTYFERYPNVKKYMDETIDKAKRDMYVTTILNRRRFIP 780

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           EI +    ++ + ER A+N PIQGSAADI + AM+ V   L++  L +K++LQ+HDEL+ 
Sbjct: 781 EIGNKNKIVKALGERLAMNTPIQGSAADIIKMAMVKVFNVLKERDLKSKIILQVHDELIL 840

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            V ++E+     I+  SME   LP   L VPL+V+I    NW
Sbjct: 841 NVYKDELEEIKSIVKDSMEN-VLP---LSVPLEVDINEGENW 878



 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 177/296 (59%), Gaps = 16/296 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K + L ++DG+S + RAFYA P L+  H+G+  NA+ GF NML K+     K+ I   
Sbjct: 7   MPKRDKLVILDGNSLMNRAFYALPPLTN-HEGVHTNAVYGFTNMLLKI-----KDDIKPD 60

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR++ Y DYKA R K+PE L  Q P+V+       I   EI+GFEADD
Sbjct: 61  YIVCTFDKSAPTFRHQAYKDYKAGRKKMPEELREQFPIVKGLLSKLAIEIFEIEGFEADD 120

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIP 175
           +I T +  AE++   V I++ DKD +QL S TT +  T     + E  D + V+ + G+ 
Sbjct: 121 LIGTLSKFAEEKDIEVYIVTGDKDALQLASDTTKILFTKRGITEREIYDRQKVVDEMGVT 180

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++ L GD  DNIPG+PGIG KTA  L++EY ++EN+L N   +  KK +EN++E
Sbjct: 181 PTEFIDVKGLMGDPSDNIPGVPGIGEKTALKLIKEYSSVENVLNNIENLSGKKLKENLIE 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRV 288
            +E A  S+KL  +  +VPI I LE +  +   D    R I F+K L+F  LI+++
Sbjct: 241 NSEQAIFSKKLATIMRNVPIDIDLEKIKSKEEYDIEAVREI-FIK-LQFKSLIDKI 294


>gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
 gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
          Length = 866

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 336/573 (58%), Gaps = 30/573 (5%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++ + I  + L+++  ++ +++ IFI+        +  +    +E +   K+FFENE  L
Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEAIL 375

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K G++IK     L + GI   G   D  L +Y++DS +  + + S+   +LS        
Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                    K  + +  E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S 
Sbjct: 428 ---------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G ++++D+L ++S +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P  
Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    +PII+ I  +RQLSKI STY + L   I+     +H+ 
Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKAVIDTDGS-IHST 595

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759
           ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI  P K+   LISADYSQIELR+LA
Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           HI+    +   F +  DIH   A+E+F V +E+V+P MR  AK +NF I+YGI  F L+ 
Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA +Y+  YF R+P I EYI K  +  +  GYV T+  RR +  E N+    +
Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           + + ER A+NAPIQG+AADI + AM++V+  L++  L +K++LQ+HDEL+  V + E+  
Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +++   ME      I L VPL V++ V  +W
Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+    R++    +    F
Sbjct: 3   RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII +  
Sbjct: 58  DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + + 
Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD  DNIPG+PG+G KTA  L++EYG++E +L N   I  KK +EN+ EY+E A 
Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237

Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289
            S+KL  + T+VPI   L+ +   +D N  +L +    L+   ++++++
Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286


>gi|332364041|gb|EGJ41819.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059]
          Length = 880

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 206/514 (40%), Positives = 303/514 (58%), Gaps = 15/514 (2%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH--DIASIAQKWLSYTRKEIL-K 522
           +++K  K++L  YGI +     D  L  Y+L +   +    IA +  + +  T  E+  K
Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLLSTVEDNELVTIARLYGQTILPTDDEVYGK 433

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K ++P       Q+ +H      V+L+    ++ +L     L +   +++P+  V+++
Sbjct: 434 GAKRALP----EQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAK 489

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P  
Sbjct: 490 MEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLE 549

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
              KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT 
Sbjct: 550 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHTR 608

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHI 761
           Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI
Sbjct: 609 YVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHI 668

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +K   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  
Sbjct: 669 SKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANN 728

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I R  A DYI+ YF RFPGI  Y E      R  GYVETI+ RR    +INS   +IR
Sbjct: 729 LGISRKAAKDYIETYFERFPGIKNYKETIVREARDKGYVETIYHRRRSLPDINSRNFNIR 788

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           N  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T  
Sbjct: 789 NFAERTAINSPIQGSAADILKVAMINLDRALTEKNFNSRMLLQVHDEIVLEVPNDELTAV 848

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            Q++  +ME A    I L VPL  +      W E
Sbjct: 849 RQLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/303 (39%), Positives = 167/303 (55%), Gaps = 19/303 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTRAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 ATT 291
            T+
Sbjct: 294 GTS 296


>gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36]
 gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains,
           putative [Streptococcus sanguinis SK36]
          Length = 880

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 205/514 (39%), Positives = 304/514 (59%), Gaps = 15/514 (2%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH--DIASIAQKWLSYTRKEIL-K 522
           ++IK  K++L  YGI +     D  L  Y+L +   +    IA +  + +  T  E+  K
Sbjct: 374 YDIKRAKVLLSHYGIELPAAAFDARLAKYLLSTVEDNELVTIARLYGQTILPTDDEVYGK 433

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K ++P       Q+ +H      V+L+    ++ +L     L +   +++P+  V+++
Sbjct: 434 GAKRALP----EQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAK 489

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P  
Sbjct: 490 MEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLE 549

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
              KT    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I     ++HT 
Sbjct: 550 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHTR 608

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHI 761
           Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI
Sbjct: 609 YVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHI 668

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  
Sbjct: 669 SQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANN 728

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IR
Sbjct: 729 LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIR 788

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           N  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T  
Sbjct: 789 NFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAV 848

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +++  +ME A    I L VPL  +      W E
Sbjct: 849 RKLVKETMETA----IELAVPLVADENAGQTWYE 878



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 167/305 (54%), Gaps = 19/305 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHYYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293

Query: 289 ATTYD 293
            T  D
Sbjct: 294 GTGQD 298


>gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 987

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 210/566 (37%), Positives = 316/566 (55%), Gaps = 50/566 (8%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-----------EDIMLMSYVLD 497
           +L  L+   E+    K+GHN+KYD LVL R G+ +RG             D M+ SY++D
Sbjct: 426 VLGALRPVLEDATKPKLGHNLKYDILVLRRAGVELRGHVSTVGAGDWPGGDSMIASYLVD 485

Query: 498 SGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           + RSSH + ++A   L        E++ + K     D +   +   +A E+++V LQL  
Sbjct: 486 ASRSSHSMDALAMALLERRNIPISELIGTGKKQKTFDTVPLDRATPYAAEDADVTLQLCQ 545

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            L P+L   +L  ++  L+ P++DV++++E  GI++D D L +    I   +  L   I 
Sbjct: 546 RLLPELQEMELGALFGGLEMPLVDVLAELEWNGIRVDPDELDRQRGRIEGRVKDLRNQIA 605

Query: 615 DLS----GEKFNLSSPKQLGDILFTKLKFPSGA----------KTKTGQWKTTAQDLEQI 660
           D +    G +F+  SPKQL  +LF K   P  A          + KTG   T A+ LE++
Sbjct: 606 DEAMGAVGREFDADSPKQLAGVLFNK---PDAADPGLGLRVIKRGKTGP-STDAEVLEKL 661

Query: 661 N---CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           +       PI   ILE+RQL+K+ +TY  +L   I+ RT+R+H  ++     TGRL+S +
Sbjct: 662 SQDASVKTPIPDLILEYRQLTKLVNTYLVNLVEEIDPRTKRIHASFNQTVAATGRLSSSD 721

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+LG++IR+AF++ P   L++ADYSQIELR+LAH+++   L + F    DI
Sbjct: 722 PNLQNIPIRTELGREIRKAFVAEPGHLLVAADYSQIELRLLAHLSRDPALIEAFREGQDI 781

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H  VAA+I  V + +VS + R  AK +NF I+YG++ F LA +L +  SEA + I  Y  
Sbjct: 782 HAAVAAQIHDVPLAEVSREQRNGAKMVNFGIVYGVTAFGLARRLGVSNSEAGEIIDGYKR 841

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF GI  ++E+        GYVET+  RR    +I+S   + R + ER AIN+ +QGSAA
Sbjct: 842 RFAGITTFLEECIAQAHAQGYVETMMKRRRPIPDIDSRDQNRRALAERMAINSVVQGSAA 901

Query: 898 DITRRAMISVHKSLEDHKLA-----------TKMLLQIHDELVFEVPEEEITTASQIIVH 946
           D+ + AM+ +H+ L     A            +MLLQIHDELVFE P++       +IV 
Sbjct: 902 DLIKIAMVDLHRRLSPRAAAWREGAGPEIEGVRMLLQIHDELVFEAPKDRAEAVRDLIVA 961

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972
            ME A    + L VPL  +  VS +W
Sbjct: 962 RMEAA----MALDVPLVADASVSGDW 983



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 158/273 (57%), Gaps = 20/273 (7%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQN-SRKESIASHFAV 63
           L+L+DG +  +RA++A  TP+ S      P N   GF  M+ KLL+   +      + AV
Sbjct: 4   LYLIDGFAQFFRAYHAIRTPMTSPVTK-EPTNMTFGFVGMMLKLLRGEGQMGGPPDYVAV 62

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           + D      TFR+++YP+YKA R   PE L+PQ+       +A G+P +  +GFEADD+I
Sbjct: 63  VIDVSGDRGTFRSQLYPEYKATRDAPPEDLMPQVERALAMLRAAGVPVLGAEGFEADDVI 122

Query: 122 ATY--TYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           AT   T+        V I+S DKDL QL+    P T +YD   +E I  E +  ++GI P
Sbjct: 123 ATIASTFSERHPDVRVRIVSKDKDLKQLLGEGVPPTEMYDVHTDEVITAETLRAEFGITP 182

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-------KR 229
            +++ + AL GD++DN+PG+PG+G KTAA L+ E+G++E ++      K K       KR
Sbjct: 183 AQVIDMLALMGDTVDNVPGVPGVGPKTAAQLVAEFGSVEAVVAEVREEKAKKDWKIKGKR 242

Query: 230 RENILEYAETA--RLSRKLVMLRTDVPITIPLE 260
           RENIL  AE     LSR+LV LR DVP+ + LE
Sbjct: 243 RENILAAAEAGVLELSRELVALRHDVPVEMDLE 275


>gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
 gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
          Length = 866

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 205/524 (39%), Positives = 314/524 (59%), Gaps = 30/524 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K+FFENE  LK G++IK     L + GI   G   D  L +Y++DS +  + + S+   
Sbjct: 365 FKEFFENEDILKNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINN 424

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +LS                 K  + +  E  +   + + +L L+L+ K+  EK+  +   
Sbjct: 425 YLS-----------------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYD 467

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+S ME  G ++++D+L ++S +  + L   ++ I++L+ E+FN++SPKQLG 
Sbjct: 468 IELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGK 527

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL  P   KTKTG + T A+ LE++    +PII+ I  +RQLSKI STY + L + 
Sbjct: 528 ILFEKLDLPVIKKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSV 585

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISA 748
           I+     +H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI  P K+   LISA
Sbjct: 586 IDTDGS-IHSTFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISA 642

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR+LAHI+    +   F +  DIH   A+E+F V +E+V+P MR  AK +NF I
Sbjct: 643 DYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGI 702

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGI  F L+  L I R EA +Y+  YF R+P I EYI K  +  +  GYV T+  RR +
Sbjct: 703 VYGIGDFSLSQDLNISRREAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRY 762

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             E N+    ++ + ER A+NAPIQG+AADI + AM++V+  L++  L +K++LQ+HDEL
Sbjct: 763 IPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDEL 822

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +  V + E+    +++   ME      I L VPL V++ V  +W
Sbjct: 823 IINVVKGELDIVKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+    R++    +    F
Sbjct: 3   RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII +  
Sbjct: 58  DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + + 
Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD  DNIPG+PG+G KTA  L++EYG++E +L N   I  KK +EN+ EY+E A 
Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237

Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289
            S+KL  + T+VPI   L+ +   +D N  +L +    L+   ++++++
Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286


>gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
 gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
          Length = 882

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/531 (36%), Positives = 319/531 (60%), Gaps = 13/531 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E  + L +F E+  + KI H+ K  K  L + G+ + G   D  + +Y+L     S+D+A
Sbjct: 355 EAKAVLIEFLESATYQKIVHDSKNFKHELLKVGLGLNGVCFDTFIAAYLLHPTNKSYDLA 414

Query: 507 SIAQKWLS----YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            + + +++       + +L   KS     ++ D +   +  + S + L +   ++  L  
Sbjct: 415 ELEELFINKQSLMNLENLLGKGKSQKTWLQLEDEERINNLGKRSQLALSVTEAMKEALQE 474

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           + +  ++  ++ P+IDV+  ME+ GI++D + L+    E+   L +L  +IY+ +GE FN
Sbjct: 475 QNMTRLFYDIEMPLIDVLFDMEVEGIKVDPEGLRSYGEELQGLLDTLTTSIYEAAGESFN 534

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG ILF KL  P   KTKTG + T A+ LE +   D PI+  ILE+RQ +K+KS
Sbjct: 535 INSPKQLGVILFEKLGIPCAKKTKTG-YSTAAEVLEALK-NDYPIVAQILEYRQYAKLKS 592

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741
           TY D L N + ++  ++H+ ++   T TGRL+S EPNLQNIP+K ++G+KIR+ F+ S  
Sbjct: 593 TYVDGLLNVLTEQN-KIHSTFNQTITATGRLSSTEPNLQNIPVKFEMGKKIRQLFVPSSE 651

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               +  DYSQIELR+LAH++    L + F+ ++DIH + A+++F V  E V+   R +A
Sbjct: 652 NHIFLDGDYSQIELRVLAHMSGDPTLIKAFKENIDIHALTASQVFHVPFEDVTSMQRSNA 711

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF I+YGIS F L+  L+I + EA  YI  YF ++P I  Y+++  +F  QNGYVET
Sbjct: 712 KAVNFGIVYGISAFALSEDLKISQKEAQKYIDGYFEKYPCIKAYLDEIIDFAMQNGYVET 771

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           ++ R+    EI +   ++R   +R A+N PIQG++ADI + AMI VH+ L++H L +K++
Sbjct: 772 LYHRKREIPEILASNYNMREFGKRVAMNTPIQGTSADIIKIAMIRVHQKLKEHSLKSKLI 831

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L +HDEL+ +  ++E+    +++   ME A     +L VPL V++    NW
Sbjct: 832 LTVHDELLIDAHKDEVEIVKKLLKEEMEHAA----DLSVPLVVDVHQGANW 878



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 158/289 (54%), Gaps = 13/289 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L DG S   RAFY  PLL+ K  G   NAI GF NM+  +++  + +    +  + FD
Sbjct: 5   LLLFDGHSIANRAFYGVPLLTNK-SGQYTNAIYGFLNMMLSIMEKEKPD----YLGITFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E   DYK NR  +PE L  Q+PL++   +A  I  IE +GFEADD++ T   
Sbjct: 60  LSVPTFRHEFSADYKGNRKGMPEELRVQIPLLKKVLKAMHIHIIEKEGFEADDVLGTLAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
             EK G  VT++S D+DL Q+ S       P T    T + E    + V++ +G+ P   
Sbjct: 120 AGEKAGMQVTVVSGDRDLFQITSDMIEIKIPRTKKTGT-EIESFFAKDVVETYGVSPIAF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V ++ L GD+ DNI G+PGIG KTA  L++EYG++EN+L    +I QKK +EN++ YA+ 
Sbjct: 179 VDVKGLMGDASDNIKGVPGIGEKTAIKLIKEYGSIENLLDQVDQITQKKLKENLMTYAQD 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           AR S+ L  +  DVP+         +        +  + LE   L+ ++
Sbjct: 239 ARDSKMLATIICDVPLVYKWSDFEFDLALDSEATALFRDLELKSLLTKL 287


>gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13]
 gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13]
          Length = 866

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 335/573 (58%), Gaps = 30/573 (5%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++ + I  + L+++  ++ +++ IFI+        +  +    +E +   K+FFENE  L
Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEAIL 375

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K G++IK     L + GI   G   D  L +Y++DS +  + + S+   +LS        
Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                    K  + +  E  +     + +L L+L+ K+  EK+  +   ++ P+  V+S 
Sbjct: 428 ---------KFPNVKEGEEDLVGITFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G ++++D+L ++S +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P  
Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    +PII+ I  +RQLSKI STY + L   I+     +H+ 
Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKAVIDTDGS-IHST 595

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759
           ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI  P K+   LISADYSQIELR+LA
Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           HI+    +   F +  DIH   A+E+F V +E+V+P MR  AK +NF I+YGI  F L+ 
Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA +Y+  YF R+P I EYI K  +  +  GYV T+  RR +  E N+    +
Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           + + ER A+NAPIQG+AADI + AM++V+  L++  L +K++LQ+HDEL+  V + E+  
Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +++   ME      I L VPL V++ V  +W
Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+    R++    +    F
Sbjct: 3   RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII +  
Sbjct: 58  DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + + 
Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD  DNIPG+PG+G KTA  L++EYG++E +L N   I  KK +EN+ EY+E A 
Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237

Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289
            S+KL  + T+VPI   L+ +   +D N  +L +    L+   ++++++
Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286


>gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
 gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
          Length = 907

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/408 (43%), Positives = 269/408 (65%), Gaps = 7/408 (1%)

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +YE ++ P++  ++ ME TGI ID   LK+   +++  +  LE  IY  +GE+FN++SP
Sbjct: 505 QLYETIEMPLVFTLADMEHTGIAIDAANLKEYGEKLAVRIKELETRIYQEAGEEFNINSP 564

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KL+ P G KTKTG + T A  L+++   + PI+ +ILE+RQL+K+KSTYAD
Sbjct: 565 KQLGVILFEKLEMPYGKKTKTG-YSTAADVLDKL-APEYPIVADILEYRQLTKLKSTYAD 622

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L N+I K   R+HT ++   T+TGRL+S EPNLQNIP++ +LG+ IR+AF+       +
Sbjct: 623 GLANYI-KEDGRIHTSFNQTITVTGRLSSTEPNLQNIPMRIELGRLIRKAFLPAKGCVFM 681

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            ADYSQIELR+LAH++    L + +  + DIHR+ A+++F +  ++V+   RR+AK +NF
Sbjct: 682 DADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNF 741

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS F L+  L I + EAA+YI+RYF  +P I  +++      ++NGYV T+FGRR
Sbjct: 742 GIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKTFLDGLVEDAKKNGYVTTMFGRR 801

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
               E++S     R+  ER A+NAPIQG+AADI + AMI VH  L +  L +++++ +HD
Sbjct: 802 RPVPELSSSNFMQRSFGERVAMNAPIQGTAADIIKIAMIRVHDRLLEEHLKSRLIITVHD 861

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+ E  E+EI    +I+   M++A     +L+V L +++    NW E
Sbjct: 862 ELLIETAEDEIDRVKEILTEGMQQAA----DLKVALAIDLHTGKNWYE 905



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 161/291 (55%), Gaps = 16/291 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RAF+  P L+   +GL  NA+ GF N+L+K+L+    E   ++  V FD
Sbjct: 5   LVLIDGHSILNRAFFGIPDLTNS-EGLHTNAVYGFLNILFKILE----EEQPNYLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y +YK  R  + E L  Q+PL++   +A G+  +E  G+EADDI+ T   
Sbjct: 60  VSQPTFRHKMYAEYKGTRKPMAEELREQVPLMKEMLKAMGVTIVEKGGYEADDILGTIAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            +E EG  V+++S D+DL+QL +       P T    T + E  + + V+ K+ + P + 
Sbjct: 120 RSEAEGLEVSVVSGDRDLLQLATDHIKIRIPKTKRTGT-EIEDYNTKEVLDKYHVTPIEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PGIG KTA  L+ +YG++EN   +   IK  +  +N+ E  E 
Sbjct: 179 IDVKALMGDTSDNIPGVPGIGEKTATALIAQYGSIENCYAHVDEIKPPRASKNLKENYEL 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINR 287
           A++S+ L  +     I   L+   LE   D          K LEF  ++ R
Sbjct: 239 AQMSKTLATIEIHADIDYDLQSARLEQIKDLYTEEAYLLCKRLEFKNMLGR 289


>gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E]
 gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I
 gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii]
 gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii]
 gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii]
 gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii]
 gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22]
          Length = 867

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 197/412 (47%), Positives = 265/412 (64%), Gaps = 7/412 (1%)

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           K   +Y  +D P   ++ +ME  GI++D + L ++S E    +L +EE I+ LSG KFN+
Sbjct: 460 KAFRLYREIDLPTCFILDKMEKVGIKVDANYLNRLSDEFGTEILKIEEEIFALSGTKFNI 519

Query: 624 SSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
            S KQLG+ILF K++ PSG    KT  + T A  L++++     I   +L WRQL+K+K+
Sbjct: 520 GSQKQLGEILFKKMQLPSGNTLAKTSSYSTRAGILKKLSEDGYHIATLLLRWRQLTKLKN 579

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY DSLP  IN  T+R+HT +   ST TGRL+S EPNLQN+PI++  G KIR AFI+   
Sbjct: 580 TYTDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSSDGNKIREAFIAEEG 639

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            KLISADYSQIELRIL+HIA I  L Q F N  DIH   A +IF +   +++ + RR AK
Sbjct: 640 YKLISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQIFNLKKHELTSEHRRKAK 699

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            INF IIYGIS F LA QL +  S A++YIK+YF  + G+ EY+ +TK    +NGYV   
Sbjct: 700 AINFGIIYGISAFGLAKQLNVSNSTASEYIKQYFAEYKGVQEYMTQTKACASRNGYVTNF 759

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           FGR+     I+  K  ++   ERAAINAPIQG+ ADI + AMI + K +E+ KL T+++L
Sbjct: 760 FGRKCFIPLIHDKK--LKQFAERAAINAPIQGTNADIIKIAMIKLDKEIEERKLKTRLIL 817

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+FEVPE E+     II   ME +     N+ VP+   IK  NNW+E
Sbjct: 818 QIHDELLFEVPEIEVEIVIPIIKKIMEHST----NMNVPIITEIKAGNNWKE 865



 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 187/320 (58%), Gaps = 6/320 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+N L L+DG  F++RA+YA   LS    G PV A+ GF +ML KLL + + +    +
Sbjct: 1   MTKKNTLLLIDGYGFVFRAYYAQKSLSSAK-GEPVGALYGFTSMLLKLLSDFKPQ----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A++FD     FR++IY +YKANRP  P+ L+ QLPLVR     F    +E  G+EADDI
Sbjct: 56  VAIVFDSGGKNFRHKIYQNYKANRPLPPKDLIAQLPLVRDVASNFKFAILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL+S    +YD +K + I  ++V+ K+G  P+K+ 
Sbjct: 116 IATFATKTVSLGEEVIIISSDKDLLQLMSKNIKIYDPIKCKYITEDNVVTKFGTTPDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  +I   K+R+ +    E A
Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITKFGSVENIFNSLDQISSIKQRKTLQNAREAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S KL+ L ++V +   L +L     N  +L  FL+   F  L  RV   +D    + E
Sbjct: 236 LISWKLIGLDSNVDLDFDLNNLKWSPPNSKKLTGFLQEYGFKSLYKRVENLFDIKINDHE 295

Query: 301 PVVLDINTTENKGIAIETEI 320
            +V D   TE K I+  +E+
Sbjct: 296 EIV-DNKVTEAKEISNASEL 314


>gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
 gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
          Length = 872

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 187/489 (38%), Positives = 301/489 (61%), Gaps = 25/489 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE--HAIEN 545
           D ++ +Y+L+  ++ ++ A IA+++L     +IL           I D+Q+ E   +   
Sbjct: 405 DTIVAAYLLNPLKNDYESADIAREYL-----DIL-----------IDDNQIDEAQKSCYE 448

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           +    +   +LR +L   ++  +++ ++ P++  +  ME  G+++  + L     ++ + 
Sbjct: 449 AYTAYESSKILRDRLKETEMEQLFDEIEMPLVFTLYDMEQNGVKVAAEALHIYGEQLGQK 508

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           ++ LE++IY+L+GE FN++SPKQLG ILF KL  P G KTKTG + T+A  L+++   + 
Sbjct: 509 IVDLEKDIYELTGETFNINSPKQLGVILFEKLGLPHGKKTKTG-YSTSADILDKL-APEY 566

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P++  ILE+RQL+K+KSTYAD L  +I K   R+H  ++   T TGR++S EPNLQNIP+
Sbjct: 567 PVVSKILEYRQLTKLKSTYADGLAGYI-KDDGRIHGKFNQTITATGRISSTEPNLQNIPV 625

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           + +LG+ IR+ FI       + ADYSQIELRILAH +    L   ++ + DIHR+ A+++
Sbjct: 626 RMELGRLIRKVFIPEDGYVFVDADYSQIELRILAHCSGDEQLINAYKEARDIHRITASQV 685

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F    E+V+   RR+AK +NF I+YGIS F L+  L I + EAA YI+ YF  +P I  +
Sbjct: 686 FHTPFEEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITKKEAAQYIESYFETYPSIKGF 745

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++      ++NGYV T+FGRR    E++S     R+  ER A+NAPIQG+AADI + AM 
Sbjct: 746 LDDAVEHAKENGYVTTVFGRRRPVPELSSSNFMQRSFGERVAMNAPIQGTAADIMKIAMN 805

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V++ L+++ + +K++LQ+HDEL+ E  EEE+    +I+ H M  A      L VPL+V+
Sbjct: 806 GVNRRLKENNMRSKLVLQVHDELLIEAYEEELEDVKEILSHEMVNAA----KLHVPLEVD 861

Query: 966 IKVSNNWQE 974
           +    NW E
Sbjct: 862 MHTGKNWYE 870



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 161/291 (55%), Gaps = 11/291 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L+  + E    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGVPDLTNS-EGLHTNAVYGFLNIMFKILEEEKPE----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E++ +YK  R  + + L  Q+P+++   QA G+  IE  G EADD++ T   
Sbjct: 60  VHAPTFRHEMFAEYKGTRKPMADELRQQVPVIKEVLQAMGVKTIEKAGLEADDLLGTLAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPEKMV 180
             E+ G  V++IS D+DL+QL +    +     K+ K +IE      V  ++ + PE+ +
Sbjct: 120 RCEEMGMEVSVISGDRDLLQLATEHVKIRIPKTKQGKTEIEDYYAADVKARYQVTPEEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+P IG KTA  ++ EYG++EN   + + +K  +  + + E+ + A
Sbjct: 180 DLKALMGDTSDNIPGVPSIGEKTATKIITEYGSIENAYAHVTELKPPRASKALSEHYDLA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           ++S+ L  +  +      +    L D        + + L+F  L++R   T
Sbjct: 240 QMSKVLATIHVNADFEYEIADAKLGDLYTEEAYVYFQRLQFKNLLSRFEVT 290


>gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
 gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
          Length = 875

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 201/538 (37%), Positives = 317/538 (58%), Gaps = 34/538 (6%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501
           N   ++ +   ++ FE++   KI +N K  + +L + GI   G + DI L +Y++D  R 
Sbjct: 364 NNTKEQFIEVCREMFESKEIKKITYNAKNPRTILRKLGIDFNGIKFDINLAAYLIDPVRK 423

Query: 502 SHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            ++I+S+A ++L  +  R+ E LK                    I+  N++  L+ +L  
Sbjct: 424 EYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLEE 463

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           K+  + +  +  ++++P+ + +S ME  G ++D+D+L Q+  +    + S +  IY +S 
Sbjct: 464 KIKDQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE 523

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           EKFN++SPKQLG ILF KL  P   KTKTG + T A+ L+++    +PII  I  +RQL+
Sbjct: 524 EKFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLT 581

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           KI STY + L   I++   ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI
Sbjct: 582 KIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI 640

Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            P T    ++SADYSQIELR+LAHI+    +   F    DIH   A+E+F V IE+V+P 
Sbjct: 641 -PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPL 699

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MR +AK +NF I+YGI  F L+  L I R EA  YI  Y  R+P +  Y+E       + 
Sbjct: 700 MRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVEK 759

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYV TI  RR +  E+ S    ++   ER A+N+PIQGSAADI + AM++VH+ L++   
Sbjct: 760 GYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDNF 819

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++LQ+HDEL+  V ++E+     ++   ME+     + L+V L V+I + NNW E
Sbjct: 820 KSSIILQVHDELILNVHKDELERIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/297 (41%), Positives = 177/297 (59%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+     KE I   
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD
Sbjct: 54  YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ DKD +QL +    +  T K    +E  D   +I+++G+ 
Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L N   IK KK +EN+ E
Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291
           Y E A  S+KL  +  +VPI + LE +   E+ +  ++    + LEF  L+N+V+ +
Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVSKS 290


>gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
 gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
          Length = 875

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 205/558 (36%), Positives = 327/558 (58%), Gaps = 35/558 (6%)

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            SFK E   ID       ++  KNT  +E +   K+ FE++   KI ++ K  + VL + 
Sbjct: 348 VSFKDEVYRIDF------ETLLKNT-KEEFIEVCKEIFESKEIKKITYDSKNPRTVLRKL 400

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G+   G   DI L +Y++D  R  ++I+S+A ++L                  K  + + 
Sbjct: 401 GMEFNGINFDINLAAYLIDPVRKEYEISSLASEYLF-----------------KNINRED 443

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++  I+  N++ +L+ +L  K+  + +  +  ++++P+ + +S ME  G ++D+++L Q+
Sbjct: 444 EDLKIKEVNIMPKLYKVLEEKIKDQDIEELLYKIEQPLTETLSAMETEGFKVDKNILLQL 503

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             +    + S +  IY +S E+FN++SPKQLG ILF KL  P   KTKTG + T A+ L+
Sbjct: 504 EKKFKGEIESTQSEIYSMSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLD 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++    +PII  I  +RQL+KI STY + L   I++   ++H+ ++   T TGRL+S EP
Sbjct: 563 KLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEP 620

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLD 776
           NLQNIPIK ++G++IR+ FI P T+   ++SADYSQIELR+LAHI+    +   F    D
Sbjct: 621 NLQNIPIKYEMGREIRKVFI-PNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDD 679

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+E+F V I++V+P MR +AK +NF I+YGI  F L+  L I R EA  YI  Y 
Sbjct: 680 IHTKTASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYL 739

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P +  Y+E       Q GYV TI  RR +  E+ S    ++   ER A+N+PIQGSA
Sbjct: 740 ERYPNVKIYLENIVEEAIQKGYVTTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSA 799

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM++VH+ L++    + ++LQ+HDEL+  V ++E+     ++   ME+     +
Sbjct: 800 ADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKREMEQV----L 855

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L+V L V+I + NNW E
Sbjct: 856 ELKVGLDVDINIGNNWYE 873



 Score =  213 bits (543), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 176/297 (59%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+     KE I   
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-EEGIHTNAIYGFVNMLLKM-----KEEIKPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD
Sbjct: 54  YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAISIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AEK+G  V I++ DKD +QL +    +  T K    +E  D   +I+++G+ 
Sbjct: 114 LIGTLSVFAEKKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++ L GDS DNIPG+PGIG KTA  L++EY ++E +L N   I+ KK +EN+ E
Sbjct: 174 PKEFIDVKGLMGDSSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIRGKKLKENLHE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291
           Y E A  S+KL  +  +VPI I LE +   E+ N  ++    + LEF  L+N+V  +
Sbjct: 234 YREQAIFSKKLATIMCNVPIEISLEEIKSKEEYNINKVRELFQRLEFKSLMNKVGKS 290


>gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2]
          Length = 833

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/498 (39%), Positives = 302/498 (60%), Gaps = 33/498 (6%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+++   +D +L++Y+LD   +  +   +A+++                        +
Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTHPE--GVARRY----------------------GGE 399

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A E + +  +L+  L P+L  EKLL +Y+ +++P+  V++ ME  G+++D  LL+ 
Sbjct: 400 FTEDAAERALLSERLFQTLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656
           +S E+ K +  LE  ++ L+G  FNL+S  QL  +LF +L   P G   KTG+ ++TAQ 
Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPFNLNSRDQLERVLFDELGLTPVGRTEKTGK-RSTAQG 517

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +   G +PI++ IL++R+LSK+KSTY D LP  ++ RT R+HT ++  +T TGRL+S 
Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T LGQ+IR+AF++     L++ADYSQIELR+LAH++    L +VF    D
Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA +FG++   V  +MRR AKT+NF ++YG+S  RL+ +L I   EA  +I+RYF
Sbjct: 638 IHTETAAWMFGLDPALVDQKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  +IE+T    R  GYVET+FGRR +  ++ S   S+R   ER A N P+QG+A
Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   L+   L   +LLQ+HDELV EVPE+    A  ++   ME A     
Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENAY---- 811

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL+V + V  +W E
Sbjct: 812 PLDVPLEVEVGVGRDWLE 829



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/284 (38%), Positives = 154/284 (54%), Gaps = 12/284 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDG    YR FYA  L + +  G PV  + GF   L K L+   +  +     V+
Sbjct: 12  KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++ T 
Sbjct: 65  FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              AE+EG  V I++ D+D  QL+S   +  L D       D++   +K+G+PPE+ V  
Sbjct: 125 AKKAEREGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +ALTGD  DNIPG+ GIG KTA  LL E+G +EN+L N  R+K    R  I  + E  RL
Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGGVENLLKNLDRVKPDSLRRKIEAHLEDLRL 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           S  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++
Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRAPDLEGLRAFLEELEFGSLLH 285


>gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
 gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
          Length = 866

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 337/573 (58%), Gaps = 30/573 (5%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++ + I  + L+++  ++ +++ IFI+        +  +    +E +   K+FFENE  L
Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEDIL 375

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K G++IK     L + GI   G   D  L +Y++DS +  + + S+   +LS        
Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                    K  + +  E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S 
Sbjct: 428 ---------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G ++++++L ++S +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P  
Sbjct: 479 MESIGFKVNKNILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    +PII+ I  +RQLSKI STY + L + I+     +H+ 
Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759
           ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI  P K+   LISADYSQIELR+LA
Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           HI+    +   F +  DIH   A+E+F V +E+V+P MR  AK +NF I+YGI  F L+ 
Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA +Y+  YF R+P I EYI K  +  +  GYV T+  RR +  E N+    +
Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           + + ER A+NAPIQG+AADI + AM++V+  L++  L +K++LQ+HDEL+  V + E+  
Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +++   ME      I L VPL V++ V  +W
Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+    R++    +    F
Sbjct: 3   RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII +  
Sbjct: 58  DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + + 
Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD  DNIPG+PG+G KTA  L++EYG++E +L N   I  KK +EN+ EY+E A 
Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237

Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289
            S+KL  + T+VPI   L+ +   +D N  +L +    L+   ++++++
Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286


>gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058]
          Length = 880

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 206/515 (40%), Positives = 307/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521
           +++K  K++L  YGI +     D  L  Y+L S    +++A+IA+ +   +  T  E+  
Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V++
Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +       I+  ILE+RQ+SK++STY   L   I     ++HT
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIASIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I++   L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA 
Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +I
Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN  ER AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T 
Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    I L VPL  +      W E
Sbjct: 848 VRKLVKETMEAA----IELAVPLVADENAGQTWYE 878



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHYYDLAQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+  N  ++K  K
Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +EN++   + A LS+ L  + T  PI I L+ L+ +      L  F   + F +L  ++
Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKTQL 293

Query: 289 AT 290
            T
Sbjct: 294 GT 295


>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
 gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
          Length = 880

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 203/531 (38%), Positives = 317/531 (59%), Gaps = 26/531 (4%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504
            ++ L  LK  FEN+   K+ HNIK    V  + GI+    + D  + +Y++DS R  + 
Sbjct: 372 NEDTLKCLKDIFENDKIEKVSHNIKVPYTVFKKMGINFTSVKFDTEIAAYLIDSSRGEYG 431

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           + SI Q +L    K +L+  +  I   ++ ++ + +   E  N  ++       +L +E+
Sbjct: 432 LNSIIQDYL----KIMLQGEEDEI---RVKENSLLKDVFETLNKQIK-------ELNMEE 477

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           LL+    +++P+  V++ ME  G ++D   L+++  +    +  L+++IY L+ E+FN++
Sbjct: 478 LLY---EVEQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDIYGLAEEEFNIN 534

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG ILF KL  P   KTKTG + T A+ LEQ+    +PII+ I  +RQ +K+ STY
Sbjct: 535 SPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEQL-LDKHPIIEKITYYRQFTKLYSTY 592

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            + L   I+K   ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ F+      
Sbjct: 593 IEGLKAVIDK-DGKIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFVPEDENS 651

Query: 745 LI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           +I SADYSQIELR+LAHIA    L   F N  DIH   A+E+F V I++V+   R +AK 
Sbjct: 652 IILSADYSQIELRVLAHIADDENLIDAFLNHSDIHTKTASEVFKVPIDQVTKLQRSNAKA 711

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGI  F LA  L+I R EA +YI  YF R+PG+  Y++        N YV TI 
Sbjct: 712 VNFGIVYGIGDFSLAKDLKISRKEAKNYIDTYFERYPGVKRYMDNVIKQAEDNLYVTTIM 771

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR    EI + K  ++   ER A+N PIQGSAADI + +M++V+  L+   L +K++LQ
Sbjct: 772 NRRRFIPEIKNSKKMVKAFGERLAMNTPIQGSAADIIKMSMVNVYNILKSKNLKSKVILQ 831

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDEL+  V ++E+    +++ + ME      + LRVPL+V+I + +NW E
Sbjct: 832 VHDELILNVYKDELEEVKELVKNQMEDV----MKLRVPLEVDINLGDNWYE 878



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/295 (38%), Positives = 168/295 (56%), Gaps = 15/295 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++DG+S + RAFYA P L+    GL  N + GF  ML K+    R+E   ++
Sbjct: 1   MSKE-KLLILDGNSLMNRAFYALPPLTNSQ-GLHTNGVYGFVTMLLKM----REEINPNY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+  Y DYKA R ++PE L  Q P+V+       I   EI GFEADD+
Sbjct: 55  IVCTFDRSAPTFRHNEYKDYKAGRKRMPEELAEQFPVVKKLLNMLSISMFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176
           I T +  AEK+   V I++ DKD +QL +    +  T K    +E  D   +I ++ + P
Sbjct: 115 IGTLSVYAEKKDIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMISEFEVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++ L GD  DNIPG+PG+G KTA  L++EYG++EN+L N   I  KK +EN+++Y
Sbjct: 175 TQFIDVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSIENVLNNIDNISGKKIKENLMQY 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRV 288
           +E A  S+KL  +  +VPI I L  +  +   D  G +  +    L+F  LI++V
Sbjct: 235 SEQAVFSKKLATIMVNVPIEIDLNEIKSKENYDVEGVK--NLFIELQFKSLIDKV 287


>gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
 gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
          Length = 866

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 209/571 (36%), Positives = 334/571 (58%), Gaps = 26/571 (4%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++ + I  + L+++  ++ +++ IFI+        +  +    +E +   K+FFENE  L
Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEDIL 375

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K G++IK     L + GI   G   D  L +Y++DS +  + + S+   +LS        
Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                    K  + +  E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S 
Sbjct: 428 ---------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G ++++++L ++S +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P  
Sbjct: 479 MESIGFKVNKNILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    +PII+ I  +RQLSKI STY + L + I+     +H+ 
Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHI 761
           ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI      L ISADYSQIELR+LAHI
Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHI 655

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    +   F +  DIH   A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L
Sbjct: 656 SGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDL 715

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I R EA +Y+  YF R+P I EYI K  +  +  GYV T+  RR +  E NS    ++ 
Sbjct: 716 NISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANSSNKIVKA 775

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           + ER A+NAPIQG+AADI + AM++V+  L++  L +K++LQ+HDEL+  V + E+    
Sbjct: 776 LGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVK 835

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +++   ME      I L VPL V++ V  +W
Sbjct: 836 KLLKEEMENT----IKLSVPLDVDVNVGEDW 862



 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+    R++    +    F
Sbjct: 3   RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII +  
Sbjct: 58  DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + + 
Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD  DNIPG+PG+G KTA  L++EYG++E +L N   I  KK +EN+ EY+E A 
Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237

Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289
            S+KL  + T+VPI   L+ +   +D N  +L +    L+   ++++++
Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286


>gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
 gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
          Length = 875

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 201/538 (37%), Positives = 316/538 (58%), Gaps = 34/538 (6%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501
           N   ++ +   K+ FE +   KI ++ K  + +L + GI   G + DI L +Y++D  R 
Sbjct: 364 NNTKEQFIEVCKEMFEGKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLIDPVRK 423

Query: 502 SHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            ++I+S+A ++L  +  R+ E LK                    I+  N++  L+ +L  
Sbjct: 424 EYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLEE 463

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           K+  + +  +  ++++P+ + +S ME  G ++D+D+L Q+  +    + S +  IY +S 
Sbjct: 464 KIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE 523

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E+FN++SPKQLG ILF KL  P   KTKTG + T A+ L+++    +PII  I  +RQL+
Sbjct: 524 EEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLT 581

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           KI STY + L   I++   ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI
Sbjct: 582 KIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI 640

Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            P T    ++SADYSQIELR+LAHI+    +   F    DIH   A+E+F V IE+V+P 
Sbjct: 641 -PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPL 699

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MR +AK +NF I+YGI  F L+  L I R EA  YI  Y  R+P +  Y+E       + 
Sbjct: 700 MRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVEK 759

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYV TI  RR +  E+ S    ++   ER A+N+PIQGSAADI + AM++VHK L++   
Sbjct: 760 GYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHKKLKEDNF 819

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++LQ+HDEL+  V ++E+     ++   ME+     + L+V L V+I + NNW E
Sbjct: 820 KSSIILQVHDELILNVHKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873



 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 176/297 (59%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+     KE I   
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEIKPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD
Sbjct: 54  YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ DKD +QL +    +  T K    +E  D   +++++G+ 
Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMMEEFGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L N   IK KK +EN+ E
Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291
           Y E A  S+KL  +  +VPI + LE +   E+ +  ++    + LEF  L+N+V  +
Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKS 290


>gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
 gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
          Length = 931

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 203/529 (38%), Positives = 321/529 (60%), Gaps = 17/529 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S +K+  E+   LK   N K   + L R GI+++G   D++L+SY+LD+  +++D+ ++A
Sbjct: 409 SPVKRILEDSTILKNVFNAKELYVSLKRLGIALKGVSFDLLLVSYLLDTNDNNNDLGALA 468

Query: 510 QK---WLSYTRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
                +   T +E+  K  K +IP    +D+   EH    +  I  L   L  +L+  + 
Sbjct: 469 HDNDYYAVMTDEEVYGKGAKFAIPA---ADADFFEHLGRKAMAINLLREPLLDRLLSHEQ 525

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +YE ++ P+  +++ ME TGI +D + L Q+ +++++ L  LE+ IY  +G +FN+ S
Sbjct: 526 TKLYEDIELPLTKILADMESTGITVDSEQLLQMRSKLTERLSELEQKIYQQAGHEFNIQS 585

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG +LF ++K+    KTKTG + T+ + LE++  GD PI+++IL +RQ++KI+STY 
Sbjct: 586 PKQLGVVLFEEMKYTPIKKTKTG-YSTSVEVLEKM--GDVPIVESILAYRQVAKIQSTYV 642

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
           + L   I+    +VHT Y    T TGRL+S++PNLQNIP++ + G++IR+AF+ S    +
Sbjct: 643 EGLLRVIHGSDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRIEEGRQIRKAFVPSHSDWQ 702

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKT 803
           ++SADYSQIELR+LAHI     L   F N  DIH   A  IFG+ + E V   +RR AK 
Sbjct: 703 ILSADYSQIELRVLAHITGDKNLQAAFINGEDIHAATARRIFGIKDDEPVEGNVRRQAKA 762

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS F L+  + + R EA   I+ YF ++P + ++ +      R+ GYVETI 
Sbjct: 763 VNFGIVYGISDFGLSKNIGVSRKEAKAIIETYFDQYPDVKKWSDDIIASARETGYVETIA 822

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I + + + R+  ER A+N+PIQGSAADI + AMI V  ++E   +   MLLQ
Sbjct: 823 HRRRYLPDIKAKRFNARSFAERTAMNSPIQGSAADIIKIAMIKVQAAIEQAGMQAHMLLQ 882

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE P  E+    +++   M+ A    + L VPL V+  V  +W
Sbjct: 883 VHDELIFEAPASEMADLEKLVTKVMDSA----VKLDVPLLVSSHVGASW 927



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 171/319 (53%), Gaps = 26/319 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR-----KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L L+DG+S  +RAFYA  L+++      H+GL  NA+ GF N+L  ++     +      
Sbjct: 38  LLLIDGNSLAFRAFYA--LINQVDRFVNHEGLHTNALVGFNNLLDGII-----DPFNPDL 90

Query: 62  AVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           A++ +D    TFR   + +YK NR   P+ L+ Q   +R   +  GI + E+ GFEADDI
Sbjct: 91  ALVAWDAGKTTFRTGKFDNYKGNRDNTPQELVEQFEPLRKMVELHGIKSYELPGFEADDI 150

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GI 174
           I T   + E+ G++VTI++ D+D+ QLVS    ++ T K+   +I+H           G+
Sbjct: 151 IGTMARLGEENGYSVTIVTGDRDMTQLVSDDITVWVT-KKGISEIDHYTPAMIAELYDGL 209

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P+++V ++ L GD+ DN PG+ GIG KTA  L+++Y ++  +      +K  K++E ++
Sbjct: 210 EPKQIVDIKGLQGDTSDNYPGVAGIGPKTALKLIKQYHSIPEMYEQIDEMKASKQKEKLV 269

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF----TKLINRVAT 290
              + A LSR L  + TD P+TI L  L     +   +I F + L+F     KL N+  T
Sbjct: 270 NGKQDAMLSRDLAKILTDAPVTISLSDLNYHGPDYENIIPFYQHLDFKAQLVKLANQGYT 329

Query: 291 TYDCDAANIEPVVLDINTT 309
                + + +    DIN T
Sbjct: 330 V--PTSGHTKDAEFDINNT 346


>gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
 gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
 gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 867

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 209/551 (37%), Positives = 324/551 (58%), Gaps = 31/551 (5%)

Query: 439 STGKNTLTKEILSYLK-KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE------DIML 491
           + G  +   EI  Y   K   N+    IGH++K D LV     IS  G E      D  +
Sbjct: 331 ACGDGSFFVEIDDYDNFKLLNNDKLTLIGHDLK-DFLV----NISYCGIELNCKILDTAI 385

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEI------LKSRKSSIPIDKISDSQVQEHAIEN 545
           M+Y+L+   S++DI+ + +K+L    + I       +++KS   IDK         A  N
Sbjct: 386 MTYLLNPSESNYDISRVLKKYLKEDLQNIDDIVGKGRNKKSYDDIDKKLLVDYMCSAASN 445

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
            + +    +    ++ +E LL   + ++ P+I+V+  ME+ G  +D+D+L+ +S EI + 
Sbjct: 446 LSKLKDKLMSFIKEMEMEDLL---KNVEIPLIEVLKSMEVYGFTLDKDVLRSISKEIDEK 502

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
              + ++IYD +G +FN++S KQL + LF KL  P+  KTKTG + T  + L ++    N
Sbjct: 503 TDKIVKDIYDAAGYEFNINSTKQLSEFLFDKLNLPAIKKTKTG-YSTDMEVLAEL-IPYN 560

Query: 666 PIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            I+  I+E+RQL K+KSTY D  +P  I     RVH+ +      TGR++S EPNLQNIP
Sbjct: 561 DIVGEIIEYRQLMKLKSTYIDGFIP--IMDENNRVHSTFKQTVAATGRISSTEPNLQNIP 618

Query: 725 IKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           ++ + G++IR+AF+S     LI SADYSQIELR+LAH+++   L + F N+ DIH   A+
Sbjct: 619 VREEFGRRIRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTAS 678

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           E+F V+ E+V+ +MRR AK +NF I+YGIS + L+  L+I R EA +YI  YF R+ G+ 
Sbjct: 679 EVFKVSKEEVTSEMRRRAKAVNFGIVYGISDYGLSKDLKISRKEAKEYIDNYFDRYKGVK 738

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            YI+    F ++NGYV TI  RR +  EINS   + R+  ER A+N PIQGSAADI + +
Sbjct: 739 NYIDSIVKFAKENGYVTTILNRRRYIPEINSKNFNQRSFGERMAMNTPIQGSAADIIKMS 798

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ V+  L++  L ++++LQ+HDEL+ +   +E+    +++   ME      I L+VPL 
Sbjct: 799 MVKVYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKELLKSIMENI----IKLKVPLV 854

Query: 964 VNIKVSNNWQE 974
           V+I    NW +
Sbjct: 855 VDIGQGKNWYD 865



 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/284 (38%), Positives = 171/284 (60%), Gaps = 10/284 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DG+S +YRA++A P L    +G+  NAI GF  ML KLL+  + + IA    + FD
Sbjct: 4   FLIIDGNSLMYRAYFALPDLMN-SEGMHTNAIYGFSMMLLKLLEEEKPDYIA----IAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y  YK  R  +PE L+ Q+ +++    AF I  IEI+GFEADDII T + 
Sbjct: 59  KKASTFRHKEYSAYKGTRQSMPEELIEQVDILKDVINAFNIKTIEIEGFEADDIIGTVSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTT----CLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           IA + G  V I++ D+D +QLVS       C     + ++ D + V +K+ + P + + L
Sbjct: 119 IASESGMDVLIVTGDRDALQLVSANVKVKICKKGITQMDEYDEKAVFEKYEVTPLQFIDL 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+P IG KTA  L++E+G++EN+L+N  ++K  K +EN+   AE A L
Sbjct: 179 KGLMGDKSDNIPGVPNIGEKTAIKLVKEFGSIENLLMNTDKLKG-KIKENVENNAELAVL 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           S++L  +  +VPI I L    +++ +  +L    + LEF+ LI+
Sbjct: 238 SKRLATIERNVPIDIDLNEYAVKNYDVNKLTELFEKLEFSSLIS 281


>gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425]
 gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425]
          Length = 982

 Score =  350 bits (897), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 212/562 (37%), Positives = 320/562 (56%), Gaps = 37/562 (6%)

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLD 497
           S G N      L  L+   E+  + K   N KYD+LVL   G+ ++G   D ML SYVL+
Sbjct: 430 SQGGNLDLTLALEQLRPLLEDARYPKAFQNTKYDRLVLKFQGVHLQGVVFDTMLASYVLN 489

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
               SH++  +++K+L  T +      +    +  +S   +  +   +     QL   LR
Sbjct: 490 P-EGSHNLTDLSRKYLDITAQSYTDLVEKGQNLADLSVEAIANYCGLDVYATFQLVPKLR 548

Query: 558 PKLIVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
             L+    KLL +   +++P+  V++ ME  GI+IDQD LKQ+S ++ ++L +LEE  Y 
Sbjct: 549 ADLLDANPKLLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERAYG 608

Query: 616 LSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
           L+GE FNL SPKQL ++LF KLK       KTK G + T A  LE++  GD+P+I  ILE
Sbjct: 609 LAGETFNLGSPKQLSELLFNKLKLDVKKSRKTKLG-YSTDAATLEKMQ-GDHPVIDLILE 666

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
            R L+K+KSTY D+LPN +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++I
Sbjct: 667 HRTLAKLKSTYVDALPNLVRSDTGRVHTDFNQAITATGRLSSSNPNLQNIPIRTEFSRQI 726

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R+AFI  P   L++ADYSQIELRILAH+++   L + ++   D+H++ A  +  +  E +
Sbjct: 727 RKAFIPEPGWMLVTADYSQIELRILAHLSQEPRLVEAYQQHQDVHKLTAQLL--LEKEDI 784

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +P+ RR AK INF +IYG+   R A +  +   +A  +I R++ R+P +  Y+++ +   
Sbjct: 785 NPEERRLAKIINFGVIYGMGAQRFARESGVSFKQAKGFIDRFYERYPLVFRYLKQMEGQA 844

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINE---------------------RAAINAPI 892
              GYVET+ GRR ++   +     +R  +                      RAA NAPI
Sbjct: 845 IALGYVETLLGRRRYFSFDSRELQQLRGKDPDSLAELDLSQLKVSQYDRGQLRAAANAPI 904

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGS+ADI + AMI + + L+ ++  T++LLQ+HDELVFE+P  E      +I  +M +A 
Sbjct: 905 QGSSADIIKVAMIKLQQRLQPYQ--TRLLLQVHDELVFEMPPSEWEPLRSLIQATMAEA- 961

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L +PL   I    NW E
Sbjct: 962 ---VPLSIPLLAEIHAGPNWME 980



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 25/302 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R++YA         R   G+P +   GF   L +++Q  +      + A
Sbjct: 20  LLLVDGHSLAFRSYYAFARGREGGLRTSTGIPTSVCYGFLKSLLEVMQIEQ----PGYLA 75

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E    YK  RP+ PE   P L  ++    A  +P + +  +EADDII 
Sbjct: 76  IAFDLGVPTFRHEAVESYKDGRPETPEDFKPDLENLKELLAALNLPVLTLATYEADDIIG 135

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLY-----------DTVKEEKIDIEHV 168
           T    A +  + V I+S D+DL QL++P    T L+            T    +   E V
Sbjct: 136 TLARKASQSNYRVKILSGDQDLFQLINPEQGVTVLHLSSTFAPRTPLGTGHPREFGTEQV 195

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +K GI P ++V  +AL GDS DNIPG+ GIG KTA  LL ++G+LE I  +  +IK   
Sbjct: 196 KEKLGILPSQVVDYKALCGDSSDNIPGVRGIGPKTAVQLLSQFGSLEQIYQSLDQIKGAT 255

Query: 229 RRENILEYAETARL-SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           R++  LE    + L S+ L  +  DVP+    +HL L      ++I  L+ LEF   + +
Sbjct: 256 RQK--LESGHASALQSQYLAQIHLDVPLEATPDHLELRGFETSKVIPLLEKLEFQSFMGQ 313

Query: 288 VA 289
           ++
Sbjct: 314 IS 315


>gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 867

 Score =  350 bits (897), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 193/500 (38%), Positives = 307/500 (61%), Gaps = 21/500 (4%)

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R  IS +G ++D+ L +Y+L+  + S+D   +++ +L      +L S K      ++ 
Sbjct: 386 LSRTEISEKGNWQDLSLAAYLLNPLKDSYDYDDLSRDYLGL----LLPSEK------ELG 435

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           DS   E   +    +  L        + +K   +Y  ++ P++  + +ME +GI +D++ 
Sbjct: 436 DS---ERPGKYRAFLSLLSGKKLLSRLDKKERELYREIELPLVFTLHEMEESGILVDREA 492

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L    AE+ + +  + E IY  +GE+FNL+SP+QLG ILF KL  P G KTKTG + T A
Sbjct: 493 LLSYGAELREKIGEIRERIYREAGEEFNLNSPQQLGQILFEKLGLPGGRKTKTG-YSTAA 551

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE+++  +N +  +ILE+R  SK+ STYA+ L + I +   R+H  ++   T TGR++
Sbjct: 552 DVLEKLSE-ENQLASDILEYRTYSKLNSTYAEGLLSWI-REDGRIHGHFNQMVTATGRIS 609

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T++G++ RR FI       I ADYSQ+ELRILA ++    L + ++N+
Sbjct: 610 STDPNLQNIPIRTEMGRRFRRVFIPKEGSIFIDADYSQVELRILAALSGDEKLIRAYQNA 669

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A+E+F V + +V+PQ+RR+AK +NF I+YGIS F L+  L I R EA +YI+R
Sbjct: 670 DDIHAVTASEVFHVPLSEVTPQLRRNAKAVNFGIVYGISAFGLSEGLSISRQEAKEYIER 729

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+ ++++      R+ GYV TIFGR+    +I+S   + R+  ER A+N+PIQG
Sbjct: 730 YFETYPGVKKFLDGEVELARKQGYVRTIFGRKRPVPDISSSNFARRSFGERVAMNSPIQG 789

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI ++AM  V ++L+      +++LQ+HDEL+ E PE+E     ++++ SM+ A   
Sbjct: 790 SAADIMKKAMNEVSRALKAGAFRARIVLQVHDELLLETPEKEADQVEELLILSMQNAA-- 847

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              LRVPL  + K   NW+E
Sbjct: 848 --KLRVPLIADAKRGRNWEE 865



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/298 (36%), Positives = 166/298 (55%), Gaps = 22/298 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DG S + RAFY  P L+   +G   NA+ GF N    +L    +   A H AV
Sbjct: 3   ENRLLLIDGHSILSRAFYGIPELT-NSEGKHTNAVYGFLN----ILLKELELEEADHLAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD PA TFR++++P+YK  R  +PE L  Q+PL++    +  IP ++ +G+EADDI+ T
Sbjct: 58  AFDLPAPTFRHKLFPEYKGTRKAMPEELREQVPLMQELLSSMHIPILKKEGYEADDILGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDI--EHVIKKWGI 174
                +KEG  V I+S D+DL+QL         P T    T   E +    E V  +W +
Sbjct: 118 IAKRMQKEGKEVVIVSGDRDLLQLADTRIKISLPKTSRGQT---EILSYFPEDVRAEWKV 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA----SRIKQKKRR 230
            PE+ + L+AL GDS DNIPG+PG+G KTA  ++Q Y  +EN   +A     ++ +K R 
Sbjct: 175 SPEEFIDLKALMGDSSDNIPGVPGMGPKTAEWIIQHYHTIENAKEHALEEDFKVPRKPRA 234

Query: 231 -ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            + +LE+ ++ARLS+ L  +  +VPI        +E+      ++ ++ LEF  L+ R
Sbjct: 235 GQELLEHWDSARLSKTLATIFLEVPIDFDFRDARVENLFNEESLAMVRRLEFKSLVKR 292


>gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 205/525 (39%), Positives = 318/525 (60%), Gaps = 28/525 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   ENE   KI H+ K    VL++  IS++ FE D  + +Y++DS RSS+D+ ++  +
Sbjct: 369 LKAIMENEELTKIIHDGKSLVTVLNKLDISIKTFEFDTAIAAYLIDSARSSYDLLTLINE 428

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLHVYE 570
           +L                 D   + ++ E  +   N  L+ ++ LL+ K+  EK+  +Y 
Sbjct: 429 YLGE---------------DITGEGEILEGKV---NFKLRDIYELLKKKIEEEKMEELYY 470

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
           +++ P+I V+S ME  G  I++++L  ++ +  + +   E+ IYDL+ E+FN++SPKQLG
Sbjct: 471 KVEHPLIFVLSSMEALGFNINKNMLDDLAIKFKEEITRTEKEIYDLAEEEFNINSPKQLG 530

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            ILF KL  P   KTKTG + T A+ LE++    + II  I  +RQ++K+ STY + L N
Sbjct: 531 KILFEKLDLPVIKKTKTG-YSTNAEVLEKLQ-DKHEIIPKITYYRQITKLNSTYVEGLKN 588

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISAD 749
            I+     +H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI       L+S D
Sbjct: 589 VIDSDGH-IHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFIPDEEGDILLSCD 647

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH++    +   F++  DIH   A+E+F V IE V+  MR  AK +NF I+
Sbjct: 648 YSQIELRVLAHMSNDENMIDAFKHHSDIHTKTASEVFKVPIEDVTSLMRSRAKAVNFGIV 707

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS F L+  L I + EA++Y++ YF R+P I  Y++      ++NGYV TI  RR   
Sbjct: 708 YGISDFSLSQDLHITKKEASEYMEIYFERYPKIKGYLDSVMQEAKENGYVLTILNRRRFI 767

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            EI S    ++ + ER A+NAPIQGSAADI + AM++V+  L++ +L + M+LQ+HDEL+
Sbjct: 768 PEIKSSNRIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLKEKELKSTMILQVHDELI 827

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             V E E+    QI+   MEK     ++++VPL+V+  +   W E
Sbjct: 828 LNVKENELEEVKQIVKDEMEKV----LDMKVPLEVDTNMGKTWYE 868



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/260 (38%), Positives = 149/260 (57%), Gaps = 9/260 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D +S + RAFYA P L+   DG+  NA+ GF NML+K+    ++E    +    FD
Sbjct: 4   LLILDSNSLLNRAFYAIPELTTS-DGIHTNAVYGFTNMLFKM----KEELKPDYIVAAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y DYKA R K+P  L  Q P+V+       I   EI GFEADDII +   
Sbjct: 59  RKGPTFRHKEYEDYKAGRKKMPPELAEQFPIVKELLDLLSISKYEIDGFEADDIIGSLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCL 182
            AEK    V +++ D+D +QL S    +  T   V E  + D +  ++++G+ P + + +
Sbjct: 119 YAEKNNIEVYVVTGDRDALQLASDNINVVITKKGVTETAVYDHKTFVEEFGVTPTQFIDV 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+PG+G KTA  L+Q YG++E +L N   I  KK +EN+  + E A  
Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAYKLIQTYGSVEEVLNNIDNISGKKLKENLENFREQAIF 238

Query: 243 SRKLVMLRTDVPITIPLEHL 262
           S+KL  + T+VPI   L+ +
Sbjct: 239 SKKLATIITEVPIEFDLDEI 258


>gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
 gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
          Length = 875

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 203/539 (37%), Positives = 321/539 (59%), Gaps = 35/539 (6%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           KNT  ++ +   K+ FE++   KI ++ K  + +L + GI   G + DI L +Y++D  R
Sbjct: 364 KNT-KEQFIEVCKEIFESKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLIDPVR 422

Query: 501 SSHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             ++I+S+A ++L  +  R+ EILK                    I+  N++ +L+ +L 
Sbjct: 423 KEYEISSLASEYLFKNINREDEILK--------------------IKEVNMMPKLYKVLE 462

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            K+  + +  +  ++++P+ + +S ME  G ++D+D+L Q+  +    + S +  IY +S
Sbjct: 463 EKIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS 522

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
            E+FN++SPKQLG ILF KL  P   KTKTG + T A+ L+++    +PII  I  +RQL
Sbjct: 523 EEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQL 580

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           +KI STY + L   I++   ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ F
Sbjct: 581 TKIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVF 639

Query: 738 ISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           I P T    ++SADYSQIELR+LAHI+    +   F    DIH   A+E+F V IE+V+P
Sbjct: 640 I-PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTP 698

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            MR +AK +NF I+YGI  F L+  L I R EA  YI  Y  R+P +  Y+E       +
Sbjct: 699 LMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVE 758

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYV TI  RR +  E+ S    ++   ER A+N+PIQGSAADI + AM++VH+ L++  
Sbjct: 759 KGYVNTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDN 818

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + ++LQ+HDEL+  V ++E+     ++   ME+     + L+V L V+I + NNW E
Sbjct: 819 FKSSIILQVHDELILNVYKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873



 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/297 (41%), Positives = 176/297 (59%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+     KE I   
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEIKPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD
Sbjct: 54  YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKDLLAALAINIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ DKD +QL +    +  T K    +E  D   +I+++G+ 
Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L N   IK KK +EN+ E
Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291
           Y E A  S+KL  +  +VPI + LE +   E+ +  ++    + LEF  L+N+V  +
Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKS 290


>gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065]
          Length = 875

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 198/535 (37%), Positives = 315/535 (58%), Gaps = 28/535 (5%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501
           N   ++ +   K+ FE++   KI ++ K  + +L + GI   G E DI L +Y++D  R 
Sbjct: 364 NNTKEQFIEVCKEIFESKEIKKITYDAKNPRTILRKLGIEFNGIEFDINLAAYLIDPVRK 423

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            ++I+S+A ++L                  K  + + +   I+  N++  L+ +L  K+ 
Sbjct: 424 EYEISSLASEYLF-----------------KNINREDEFLRIKEVNIMPNLYKVLEEKIK 466

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            + +  +  ++++P+ + +S ME  G ++D+D+L Q+  +    + S +  IY +S E+F
Sbjct: 467 EQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF 526

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++SPKQLG ILF KL  P   KTKTG + T A+ L+++    +PII  I  +RQL+KI 
Sbjct: 527 NINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLTKIY 584

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY + L   I++   ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI P 
Sbjct: 585 STYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI-PN 642

Query: 742 TKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           T    ++SADYSQIELR+LAHI+    +   F    DIH   A+E+F V IE+V+P MR 
Sbjct: 643 TGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPLMRG 702

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           +AK +NF I+YGI  F L+  L I R EA  YI  Y  R+P +  Y+E       + GYV
Sbjct: 703 NAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAIEKGYV 762

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            TI  RR +  E+ S    ++   ER A+N+PIQGSAADI + AM++VH+ L++    + 
Sbjct: 763 STILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDNFKSS 822

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++LQ+HDEL+  V ++E+     ++   ME+     + L+V L V+I + NNW E
Sbjct: 823 IILQVHDELILNVHKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/297 (41%), Positives = 176/297 (59%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+     KE I   
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD
Sbjct: 54  YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ DKD +QL +    +  T K    +E  D   +I+++G+ 
Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L N   IK KK +EN+ E
Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291
           Y E A  S+KL  +  +VPI + LE +   E+ +  ++    + LEF  L+N+V  +
Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKS 290


>gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
 gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
          Length = 877

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 197/492 (40%), Positives = 302/492 (61%), Gaps = 17/492 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           D ML  Y++ S    + I++IA+ +    L+   +   K  K ++P D+I    + +H  
Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFDVGHLATDEEIFGKGTKLALPDDEI----LFDHLA 450

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
               V+ +    +  +LI  +  H+   ++ P+ +V+++MEITGI + Q+ L+++ AE  
Sbjct: 451 RKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAENE 510

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + L  L   IY+L+GE+FN++SPKQLG ILF KL+ P G KTKTG   +TA D+ +    
Sbjct: 511 EKLALLTREIYELAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P++  ILE+RQ++K++STY   L   I     ++HT Y    T TGRL+S++PNLQNI
Sbjct: 569 LSPVVAKILEYRQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++ + G+KIR+AF+      L+S+DYSQIELR+LAHI+    L   F++  DIH   + 
Sbjct: 628 PVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSM 687

Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +FG+   E V+   RR+AK +NF ++YGIS F LA  L I R +A +YI+ YF R+PGI
Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E      R  G+VET+  RR    +IN+   ++R   ER AIN+PIQGSAADI + 
Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K+L + +  +K+LLQ+HDE++ +VP EE+     ++  +ME+A    I L VPL
Sbjct: 808 AMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEEIQVLVKETMEEA----IELAVPL 863

Query: 963 KVNIKVSNNWQE 974
           KV+      W E
Sbjct: 864 KVDENTGKTWYE 875



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 167/299 (55%), Gaps = 13/299 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A    L R    +GL  NAI  F  ML  L++  +    
Sbjct: 1   MEDKNRLLLIDGSSVAFRAFFALYNQLDRFKAPNGLHTNAIFAFHTMLSSLMERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  +EA
Sbjct: 57  PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116

Query: 118 DDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+  N   +K  K ++
Sbjct: 177 MGLTPSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKD 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           N++   E A LS++L  + T  P+ I LE  +L++ N   L  F   + F++  +++ T
Sbjct: 237 NLIADKEMAFLSQQLATINTKTPLEIGLEDTLLKEKNVAELGQFYDEMGFSQFKSKLLT 295


>gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
 gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
          Length = 875

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 316/538 (58%), Gaps = 34/538 (6%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501
           N   ++ +   K+ FE++   KI ++ K  + +L + GI   G + DI L +Y++D  R 
Sbjct: 364 NNTKEQFIEVCKEMFESKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLIDPVRK 423

Query: 502 SHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            ++I+S+A ++L  +  R+ E LK                    I+  N++  L+ +L  
Sbjct: 424 EYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLEE 463

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           K+  + +  +  ++++P+ + +S ME  G ++D+D+L Q+       + S +  IY +S 
Sbjct: 464 KIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKRFKGEIESTQLEIYSMSE 523

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E+FN++SPKQLG ILF KL  P   KTKTG + T A+ L+++    +PII  I  +RQL+
Sbjct: 524 EEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLT 581

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           KI STY + L   I++   ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI
Sbjct: 582 KIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI 640

Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            P T    ++SADYSQIELR+LAHI+    +   F    DIH   A+E+F V IE+V+P 
Sbjct: 641 -PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPL 699

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MR +AK +NF I+YGI  F L+  L I R EA  YI  Y  R+P +  Y+E       + 
Sbjct: 700 MRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVEK 759

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYV TI  RR +  E+ S    ++   ER A+N+PIQGSAADI + AM++VH+ L++   
Sbjct: 760 GYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDNF 819

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++LQ+HDEL+  V ++E+     ++   ME+     + L+V L V+I + NNW E
Sbjct: 820 KSSIILQVHDELILNVHKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873



 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 176/297 (59%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+     KE I   
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD
Sbjct: 54  YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ DKD +QL +    +  T K    +E  D   +++++G+ 
Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMVEEFGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L N   IK KK +EN+ E
Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIEIVLENIENIKGKKLKENLHE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291
           Y E A  S+KL  +  +VPI + LE +   E+ +  ++    + LEF  L+N+V  +
Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVREMFEKLEFKSLMNKVGKS 290


>gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12]
 gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12]
          Length = 903

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 287/990 (28%), Positives = 469/990 (47%), Gaps = 114/990 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNVK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           DIIA+   +A    +   I S DKD  QL+S    L+D   E    ++  ++K+GI P +
Sbjct: 122 DIIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LENI  N   +K     K  + ++ 
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLENIYENLDLVKNLLSPKMYQALIH 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
              +A LS++L  L+        ++      C  P     LK  +  K    ++T  D +
Sbjct: 237 DKASAFLSKELATLQRGC-----IKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +   P++LD     +   A++              S+L +  +  N+    + + LE  
Sbjct: 292 NSPT-PLILDNAPALDNASALDNA------------SALDNAPASDNAPTKSRMIVLESA 338

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAIAISTL 414
           + LS +                   ++KL+   +  F +++ D       K +A+A    
Sbjct: 339 EPLSMF-------------------LEKLKNPNARVFMRLVLDK----EKKVLALAFLLQ 375

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN--EHFLKIGHNIK-Y 471
           DQ      + E +F   S                 L +L+  F    +H   +GH++K  
Sbjct: 376 DQGYFLPLE-EALFSPFS-----------------LEFLENAFSQMLQHAQIVGHDLKPL 417

Query: 472 DKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
              +  +Y + +     +D  +++++ +  +   D     +    Y ++E+       IP
Sbjct: 418 LSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD-----EVLREYLKEEL-------IP 465

Query: 530 IDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +KI D +++   +E      N + +L        + E LL +   ++ P + V+  ME 
Sbjct: 466 HEKIKDFKIKAEKLELLSVELNALKRLCEYFEKGGLEENLLALAREIETPFVKVLMGMEF 525

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G +ID    K++  E    L  LE  I DL G  FNL+SPKQLG+IL+ KL  P     
Sbjct: 526 QGFKIDAPYFKRLEQEFKNELNILECQILDLIGVDFNLNSPKQLGEILYEKLGLP----- 580

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           K     T  ++L +I    +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +  
Sbjct: 581 KNKSHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFIQ 638

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKI 764
             T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH ++ 
Sbjct: 639 TGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQD 698

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    DIH   +  +FG ++ K   + R  AK+INF ++YG+   +L+  L IP
Sbjct: 699 KDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYGMGSKKLSETLNIP 755

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            SEA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D  N     I+    
Sbjct: 756 LSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FNGVNDYIKGNYL 814

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q I
Sbjct: 815 REGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQQEI 873

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +     P   LRVPL+ +  V+N W E
Sbjct: 874 QRILNDEVYP---LRVPLETSAFVANRWNE 900


>gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 887

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/515 (37%), Positives = 306/515 (59%), Gaps = 11/515 (2%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEI 520
           +GH++K    +    G  +   + D  + +Y+L+   + +D+ S+A K+L  T    +E+
Sbjct: 377 VGHDLKALTHIFEAQGAQLVKMDFDTYVAAYLLEPADNRYDLKSLAAKYLDQTIVGEEEL 436

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           L   ++   + +I+  +     +     I  L   L  +L   ++  +Y++++ P+I V+
Sbjct: 437 LGKGRTRRALAEIAAPERAAFIVGECAAIHGLHAELAHQLEEMEMTALYQKIELPLIPVL 496

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           + ME  G +IDQ+ LK +SA     + +L   IY+ +G++FN++S KQLG ILF ++  P
Sbjct: 497 ASMESIGFKIDQEQLKNLSAHFEARIETLTRQIYEEAGQRFNINSTKQLGMILFEEMGLP 556

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KTKTG + T+ + LEQ+    N I+ +ILE+R ++K+ STY   L   ++  T++++
Sbjct: 557 PIKKTKTG-YSTSVEVLEQLRP-YNTIVDDILEYRTVTKLDSTYGRGLIKLVDPETEKIY 614

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           + ++   T TGR++S +PNLQNIP++TDLG++IRR F+ S P   L+ ADYSQIELR+LA
Sbjct: 615 SHFNQTVTATGRISSSDPNLQNIPVRTDLGREIRRVFVPSSPMCVLVDADYSQIELRVLA 674

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+ +   L + F  + DIH   A+EIF V +E V+ + R HAK INF +IYG   F L  
Sbjct: 675 HLTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIYGKQAFSLGK 734

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           +L I R++A DYI  YF R+P ++ Y++  +   +  GYV T++GRR +  EI S    I
Sbjct: 735 ELGIGRNQAQDYIDMYFSRYPKVYAYMKAIREEAKTKGYVTTLYGRRRYIPEIQSRNRMI 794

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
               ER A+N PIQGSAADI + AM+ V+  L      + +LLQIHDEL+ E PE E   
Sbjct: 795 VQSGERMALNTPIQGSAADIMKIAMVKVYHRLAKESFRSHLLLQIHDELIIEAPETESEK 854

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++   ME A    ++L VPL V+ ++  +W E
Sbjct: 855 ILRLLTEEMENA----VSLSVPLVVDARIGKSWYE 885



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 158/299 (52%), Gaps = 14/299 (4%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+DG+S ++R FY    ++    G+P N I GF     KLLQ  + E    + A  FD  
Sbjct: 12  LIDGNSILFRMFYGVRTMTSSK-GVPTNGIFGFV----KLLQQIQNEMQPDYLAAAFDMA 66

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR++ Y  YKA R K+PE L+ QL L++       +P + + G+EADDII T     
Sbjct: 67  QPTFRHQRYDAYKAGRDKMPEELITQLDLIKEILTQMQVPVVMLAGYEADDIIGTLAKKF 126

Query: 129 EKEGFAVTIISTDKDLMQLVSPTT-CLYDTVKEE----KIDIEHVIKKWGIPPEKMVCLQ 183
             +G A  II+ D+D  QLV      LY T +      ++D  ++ +K+GI P +++ ++
Sbjct: 127 SGKGVAAKIITGDRDSFQLVEDQVHILYTTTRSGNQFVEVDPVYIHEKYGIEPIELIQVK 186

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD  DNIPGI GIG KTA   +++Y  ++ +  +   +K  K++E +    + A LS
Sbjct: 187 ALMGDPSDNIPGIKGIGEKTALKFVKQYHTVDGLYEHIDELK-GKQKEKVAAGKDAAYLS 245

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC---DAANI 299
             L  +    PI +    + + D    +++  LK LEFT ++ +++        DAA++
Sbjct: 246 LFLGEIDVKAPIEMDESDMQMRDLFNEQVVEILKELEFTSILRKLSAPMALPTGDAASV 304


>gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
 gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
          Length = 876

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 198/529 (37%), Positives = 324/529 (61%), Gaps = 22/529 (4%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           S L  +F ++   K G ++K +  +    G+++   +D+ML + ++DS  ++   A I +
Sbjct: 363 SDLLAYFSSDMPHKYGFDVKRNLHLAENEGLTLNFHDDMMLAASLVDSSLTT--TAKIIE 420

Query: 511 KW-----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           ++     +SY      K  K ++ ID+  + Q   +A   +  I +L+  + PKL   K+
Sbjct: 421 RYGFENTVSY-EDVYGKPTKPNLIIDE--EKQCM-YACAFARNIFRLYAEITPKLQEYKM 476

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y  ++ P+  V+  ME  GI+ D D+L +++ E    +   ++ IY L+ ++FN++S
Sbjct: 477 EKLYYEMEMPLTTVLYHMEREGIRCDIDILDRIATETMAKISEAQKEIYVLAAKEFNINS 536

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQL ++LF  L  P+G K  T      A +LE++  G +PII  ILE+R+LSKI STYA
Sbjct: 537 PKQLAEVLFDDLGLPTGKKRSTA-----AGELEKLQ-GKSPIIDYILEYRKLSKIYSTYA 590

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           + L  +I ++  ++HT Y+ ++T TGRL+S EPNLQNI ++ + G++IR+AF+      L
Sbjct: 591 EGLKKYI-QQDGKIHTIYNQSATQTGRLSSSEPNLQNISVRDEQGKEIRKAFLPENGCVL 649

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           IS+DY QIELR+LAH+A  T L + F+  +DIH   A ++F    ++++ Q RR AKT+N
Sbjct: 650 ISSDYHQIELRMLAHMANETSLIEAFKEGIDIHTKTAMDVFHKPQDEITAQDRRSAKTVN 709

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS F L+ QL + R EA D+I+RY+  +P I  Y+++      + GYVET+ GR
Sbjct: 710 FGIVYGISDFGLSEQLGVSRYEAHDFIERYYAAYPKIRIYMDQIVKDCEEKGYVETLCGR 769

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    EI+    + R   +RAA+NAPIQGSAAD+ + AMI + + ++D K+ +KM+LQ+H
Sbjct: 770 RREIPEIHDKNHATREFGKRAAMNAPIQGSAADLIKLAMIHIDQMMKDAKVKSKMILQVH 829

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+F VP+EE+   +++I   M  A    ++L+VPL     + ++W E
Sbjct: 830 DELIFNVPKEEVDVMTKLINDGMVNA----MHLQVPLTAECSIGSDWYE 874



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 177/307 (57%), Gaps = 20/307 (6%)

Query: 7   LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L DG+S ++RA+YAT    P+ +   DG P NA+ GF +M+ K +   + +++     
Sbjct: 9   LLLTDGNSMLFRAYYATAYGRPMTTS--DGTPTNAVFGFASMIQKAIDIIQPDAVL---- 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR+E+Y DYK  R   P+ L+PQ  LVR    AF I  +E+Q  EADD+I 
Sbjct: 63  VAFDAGKHTFRHELYADYKGGRKPAPDDLVPQFKLVRDFLDAFAIAWVEMQNIEADDLIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPE 177
           T +  A+   +   ++++D D++QL+  TT +   +K+   D+     E + ++ GI P 
Sbjct: 123 TISKKAKD--YQTYVLTSDHDMLQLIDETTSVL-LMKKGITDMDVVTPESLKEQMGIEPL 179

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++ L GD  DNIPGIPGIG KTA  LL+EYG +EN++ N  ++K   +++ ++E  
Sbjct: 180 QIIDMKGLMGDKSDNIPGIPGIGEKTALKLLEEYGTVENVIANEDKLKGALQKK-VMEGH 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           ++A LS+KL  +R D+ + +  + L     N P+L+ FL+ LE   L  R +     +  
Sbjct: 239 DSALLSKKLATIRRDIDVEMSEKELSFTP-NYPQLVKFLQMLEMNTLARRFSDKITIEEN 297

Query: 298 NIEPVVL 304
             E +V+
Sbjct: 298 TTEEIVV 304


>gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
 gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
          Length = 875

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 317/538 (58%), Gaps = 34/538 (6%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501
           N   ++ +   K+ FE++   KI ++ K  + +L + GI   G + DI L +Y++D  R 
Sbjct: 364 NNTKEQFIEVCKEIFESKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLIDPVRK 423

Query: 502 SHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            ++I+S+A ++L  +  R+ E LK                    I+  N++  L+ +L  
Sbjct: 424 EYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLEE 463

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           K+  + +  +  ++++P+ + +S ME  G ++D+D+L Q+  +    + S +  IY +S 
Sbjct: 464 KIKDQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE 523

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E+FN++SPKQLG ILF KL  P   KTKTG + T A+ L+++    +PII  I  +RQL+
Sbjct: 524 EEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLT 581

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           KI STY + L   I++   ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI
Sbjct: 582 KIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI 640

Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            P T    ++SADYSQIELR+LAHI+    +   F    DIH   A+E+F V IE+V+P 
Sbjct: 641 -PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPL 699

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MR +AK +NF I+YGI  F L+  L I R EA  YI  Y  R+P +  Y+E       + 
Sbjct: 700 MRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVEK 759

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYV TI  RR +  E+ S    ++   ER A+N+PIQGSAADI + AM++VH+ L++   
Sbjct: 760 GYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDNF 819

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++LQ+HDEL+  V ++E+     ++   ME+     + L+V L V+I + NNW E
Sbjct: 820 KSSIILQVHDELILNVYKDELEKIKALVEKEMEQV----LELKVGLDVDINIGNNWYE 873



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/297 (41%), Positives = 176/297 (59%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+     KE I   
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD
Sbjct: 54  YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ DKD +QL +    +  T K    +E  D   +I+++G+ 
Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L N   IK KK +EN+ E
Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291
           Y E A  S+KL  +  +VPI + LE +   E+ +  ++    + LEF  L+N+V  +
Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKS 290


>gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 870

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/487 (38%), Positives = 294/487 (60%), Gaps = 22/487 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ + +Y+L+  +S +        WL    + +      S+ ID+ ++   +  +   + 
Sbjct: 404 DVGIAAYLLNPLKSDY-------TWLDVAAEHL------SLLIDEKTEGYCR--SCYEAY 448

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           VI     +L  K+       ++  ++ P++  +  ME  G++++ + L+    ++   ++
Sbjct: 449 VIWAAAAVLEEKMKESGTEELFRTIEMPLLFTLFAMEQAGVRVEAEALRFYGEQLGTKIV 508

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            LE+ IY  +GE FN++SPKQLG ILF KLK P G KTKTG + T A  L+++   + P+
Sbjct: 509 ELEKEIYAQAGEAFNINSPKQLGVILFEKLKLPHGKKTKTG-YSTAADVLDKL-APEYPV 566

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ ILE+RQL+K+KSTYAD L N+I     R+H  ++   T TGR++S EPNLQNIP++ 
Sbjct: 567 VEKILEYRQLTKLKSTYADGLANYICA-DGRIHGKFNQTITATGRISSTEPNLQNIPVRM 625

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           +LG+ IR+ FI       + ADYSQIELRILAH +    L   +  + DIHR+ A+++F 
Sbjct: 626 ELGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFH 685

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
              ++V+   RR+AK +NF I+YGIS F L+  L I R EA++YI RYF  +PGI ++++
Sbjct: 686 TPFDEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASEYIDRYFETYPGIKKFLD 745

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
            T    ++ GYV T+FGRR    E+ S     R+  ER A+NAPIQG+AAD+ + AMI V
Sbjct: 746 DTVAHAKEMGYVVTLFGRRRPVPELASSNFMQRSFGERVAMNAPIQGTAADVMKIAMIGV 805

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H+ L + K+ ++++LQ+HDEL+ E  EEE+    +I+   ME+A      L VPL+V++ 
Sbjct: 806 HRELTERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAA----QLDVPLEVDMH 861

Query: 968 VSNNWQE 974
              NW E
Sbjct: 862 TGRNWYE 868



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 165/296 (55%), Gaps = 15/296 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NAI GF N+L+K+L+  R +    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGVPDLTNA-EGLHTNAIYGFLNILFKILEEERPD----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++++ DYK  R  + E L  Q+P+++   +A  I  +E +G EADD++ T   
Sbjct: 60  VHAPTFRHKMFSDYKGTRKPMAEELRQQVPVMKEVLRAMKIKIVEQEGLEADDLLGTIAG 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180
           I E+ G  V I+S D+DL+QL +    +     K+ K +IE      V  ++ + P++ +
Sbjct: 120 IGERAGMDVAILSGDRDLLQLATDHVKIRIPKTKQGKTEIEDYYAADVKARYQVTPQEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+P IG KTA  ++ EYG++EN   +   +K  +  + + E+ + A
Sbjct: 180 DLKALMGDASDNIPGVPSIGEKTATKIITEYGSVENAYAHVEELKPPRAAKALKEHYDKA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           ++S+ L  +  + PI+  L    + +        + + L+F  L+ R    +D +A
Sbjct: 240 QMSKILATIEVNAPISYELSEAKIGNLYTEEAYEYFQKLQFKNLLGR----FDVEA 291


>gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
 gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
          Length = 876

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 197/492 (40%), Positives = 290/492 (58%), Gaps = 25/492 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L  Y+L    S  DI   A           L    +  P D +SD Q  E     + 
Sbjct: 403 DLELGDYLLHPEESRRDIERTAFA---------LCGDAAEAPAD-LSDEQRAER---EAQ 449

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           +  +L   L+  L    LL +Y+ ++ P++ V++ ME TGI +++  L++  A  +  + 
Sbjct: 450 LAARLHSPLQAALAEAGLLPLYQDVELPLVPVLAAMEQTGIYVNRTALERERAAANARID 509

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK---TKTGQWKTTAQDLEQINCGD 664
           +L E I+ L+G +FN+SSPKQLG++LF +L+  +G K   TKTG + T A+ LE++    
Sbjct: 510 ALAEEIHALAGMEFNISSPKQLGEVLFERLELAAGTKIKKTKTG-YSTNAETLEELR-DR 567

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +PI+  +L +R  +K++STY D +   I   T RV+T ++   T TGRL+S +PNLQNIP
Sbjct: 568 HPIVDKVLTYRMWTKLRSTYLDGIGALIRPETGRVYTNFNQTVTATGRLSSSDPNLQNIP 627

Query: 725 IKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           ++T+ G+ +R A   P      L+SADYSQIELRILAH++    L   F +  DIH   A
Sbjct: 628 VRTEEGRAVR-ALFEPGEGYDVLLSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTA 686

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV I+ V+ + RR AK +NF I+YG+S + L+  LRIPR EAA YI+RYF R+ G+
Sbjct: 687 AEVFGVPIDAVTGEQRRRAKAVNFGIVYGLSDYGLSRDLRIPRKEAAGYIERYFERYHGV 746

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            E+++KT      NGYV T++GRR     INS     R+  ER A+N PIQG+AAD+ + 
Sbjct: 747 REFLDKTVADAHANGYVTTLYGRRRELSAINSRNYMQRSFAERMAMNTPIQGTAADLIKI 806

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI  H +L    + +++LLQ+HDELV E  E EI   S ++  +M  A      L VPL
Sbjct: 807 AMIRAHDALHAAGVKSRILLQVHDELVLEAAEAEIAQVSGLLRTAMSGAA----ELAVPL 862

Query: 963 KVNIKVSNNWQE 974
            V++ +  NW E
Sbjct: 863 AVDVHIGKNWAE 874



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/250 (40%), Positives = 144/250 (57%), Gaps = 9/250 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DGSS  +RAFYA  L      G+  NA+ GF  ML KLL+    E I     + FD  
Sbjct: 7   ILDGSSLFFRAFYALQLPPNAR-GVHTNAVHGFAMMLVKLLKELAPEQIV----IAFDKS 61

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR EIYPDYK  R K PE L  Q+PL++   +A GIP +E   +EADDII T    A
Sbjct: 62  RTTFRTEIYPDYKGTRDKTPEELTAQIPLLKELAEALGIPFLERDHYEADDIIGTLGTQA 121

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184
             EG    +++ D+D +QL+ P   +  T K     +  D     +++G  P +++ ++ 
Sbjct: 122 VDEGTETAVVTGDRDALQLIRPHLTVMLTKKGISEMKSYDAAVFEEEYGFVPGRLIDMKG 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PGIG KTA  LL  YG++EN+L +A+ +  KK   +++EY + A LS+
Sbjct: 182 LMGDSSDNIPGVPGIGPKTATKLLIAYGSIENVLDHAAEVSGKKLSTSLIEYRDQALLSK 241

Query: 245 KLVMLRTDVP 254
            L  +  +VP
Sbjct: 242 ALATIECNVP 251


>gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635]
 gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635]
          Length = 876

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +++ T  K  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
 gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
          Length = 867

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 201/499 (40%), Positives = 287/499 (57%), Gaps = 32/499 (6%)

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            R G+ +R  +D +LM+YVLD   S+ D  ++              +R+   P    +  
Sbjct: 398 QRCGLEVRPGDDPLLMAYVLDP--SAADPETL--------------TRRYGTPAWGATAV 441

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
                  E S         LRPKL    L  +YE +++P+ +V++ ME+TG+++D   L 
Sbjct: 442 ARAVATAELSRT-------LRPKL-AGALRRLYEEIERPVAEVLAHMEVTGVRLDTAALA 493

Query: 597 QVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             S  +++ L +LE  + +L+G    NL+S  QL ++LF KL+  +G KT TG+  T   
Sbjct: 494 AQSESLAEKLAALEREVRELAGNPNLNLNSRDQLAELLFEKLELQAGRKTSTGKRSTAVS 553

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +    +P++  ILE+R+L+K+KSTY D LP  IN  T R+HT ++  +T TGRL+S
Sbjct: 554 ALEPLKDA-HPVVPLILEYRELAKLKSTYLDPLPRLINPHTGRLHTTFNQTATATGRLSS 612

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             PNLQNIP++T +G++IRRAF++     L+ ADYSQIELRILAHI     L + F    
Sbjct: 613 ANPNLQNIPVRTAVGREIRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRRGE 672

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AA+IFGV  E V+P+ RR AK INF ++YG+S  RLA +L IP +EA  +I+ Y
Sbjct: 673 DIHRRTAAQIFGVPPEAVTPEGRRVAKVINFGVLYGMSAHRLARELSIPYAEADAFIRSY 732

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P +  YI++T  F R  GYVET+FGRR    +I S   + R   ER A N PIQG+
Sbjct: 733 FEGYPKVRAYIDETLAFARDKGYVETLFGRRRPIPDIRSSNRNAREYAERTAYNMPIQGT 792

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
            ADI + AM+ +   L+ H    K+LLQ+HDELV E PE      +  +   ME A    
Sbjct: 793 QADIVKLAMVRLLPRLKAH--GAKLLLQVHDELVLEAPEGAAEAVAAEVKAVMEGA---- 846

Query: 956 INLRVPLKVNIKVSNNWQE 974
             +RVPL   +    NW E
Sbjct: 847 FAMRVPLVAEVGRGRNWLE 865



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/287 (35%), Positives = 155/287 (54%), Gaps = 4/287 (1%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + ++DG +  +R++YA   LS    G P NAI GF   L ++L    +E       V 
Sbjct: 31  HKIVIIDGHALAFRSYYAIRELSNSR-GEPTNAIYGFLRSLLRILA---EEGEFDATVVT 86

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD PA +FR+E +  YKA R   PE L  Q+ +++      G+  IE+ G EADD+I T 
Sbjct: 87  FDAPAKSFRHEQFEGYKAGRRDTPEDLPEQIRIIKQLVDLLGLYRIEVPGLEADDLIGTI 146

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                ++G+ V I+++D+D  QLVS    +    K E+   + V +K+G+  ++ V  +A
Sbjct: 147 AARCAEKGYTVEIVTSDRDAYQLVSDRVYVRGLAKAERFGPDEVFEKFGVRVDQWVDFRA 206

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           LTGD+ DNIPG  GIG KTAA LLQ+YG+L+ IL N  R+K +   + +    E  + SR
Sbjct: 207 LTGDASDNIPGAKGIGPKTAAKLLQDYGSLDAILENLERVKPESAAKKVRASLEDVKFSR 266

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           +L  + TD  +T+  E     +     L   L+ LEF  +I  +  T
Sbjct: 267 ELSRIITDADLTVTPEVWAQREPQREALRELLERLEFGSIIRELGLT 313


>gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 870

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 185/487 (37%), Positives = 294/487 (60%), Gaps = 22/487 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ + +Y+L+  +S +        WL    + +      S+ ID+ ++   +  +   + 
Sbjct: 404 DVGIAAYLLNPLKSDY-------TWLDVAAEHL------SLLIDEKTEGYCR--SCYEAY 448

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           VI     +L  K+       ++  ++ P++  +  ME  G++++ + L+    ++   ++
Sbjct: 449 VIWAAAAVLEEKMKESGTEELFRTIEMPLLFTLFAMEQAGVRVEAEALRLYGEQLGTKIV 508

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            LE+ IY  +GE FN++SPKQLG ILF KL+ P G KTKTG + T A  L+++   + P+
Sbjct: 509 ELEKEIYAQAGEAFNINSPKQLGVILFEKLRLPHGKKTKTG-YSTAADVLDKL-APEYPV 566

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ ILE+RQL+K+KSTYAD L N+I     R+H  ++   T TGR++S EPNLQNIP++ 
Sbjct: 567 VEKILEYRQLTKLKSTYADGLANYICA-DGRIHGKFNQTITATGRISSTEPNLQNIPVRM 625

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           +LG+ IR+ FI       + ADYSQIELRILAH +    L   +  + DIHR+ A+++F 
Sbjct: 626 ELGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFH 685

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
              ++V+   RR+AK +NF I+YGIS F L+  L I R EA++YI RYF  +PGI ++++
Sbjct: 686 TPFDEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASEYIDRYFETYPGIKKFLD 745

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
            T    ++ GYV T+FGRR    E+ S     R+  ER A+NAPIQG+AAD+ + AMI V
Sbjct: 746 DTVAHAKEMGYVVTLFGRRRPVPELASSNFMQRSFGERVAMNAPIQGTAADVMKIAMIGV 805

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H+ L + K+ ++++LQ+HDEL+ E  EEE+    +I+   ME+A      L VPL+V++ 
Sbjct: 806 HRELTERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAA----QLDVPLEVDMH 861

Query: 968 VSNNWQE 974
              NW E
Sbjct: 862 TGRNWYE 868



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 165/296 (55%), Gaps = 15/296 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NAI GF N+L+K+L+  R +    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGVPDLTNA-EGLHTNAIYGFLNILFKILEEERPD----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++++ DYK  R  + E L  Q+P+++   +A  I  +E +G EADD++ T   
Sbjct: 60  VHAPTFRHKMFSDYKGTRKPMAEELRQQVPVMKEVLRAMKIKIVEQEGLEADDLLGTIAG 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180
           I E+ G  V I+S D+DL+QL +    +     K+ K +IE      V  ++ + P++ +
Sbjct: 120 IGERAGMDVVILSGDRDLLQLATDHVKIRIPKTKQGKTEIEDYYAADVKARYQVTPQEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+P IG KTA  ++ EYG++EN   +   +K  +  + + E+ + A
Sbjct: 180 DLKALMGDASDNIPGVPSIGEKTATKIITEYGSVENAYAHVEELKPPRAAKALKEHYDKA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           ++S+ L  +  + PI+  L    + +        + + L+F  L+ R    +D +A
Sbjct: 240 QMSKILATIEVNAPISYELSEAKIGNLYTGEAYEYFQKLQFKNLLGR----FDVEA 291


>gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11]
 gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46]
          Length = 876

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +++ T  K  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 876

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVA--------FITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKVFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +++ T  +  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNVDFTSLEEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
 gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
          Length = 439

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/438 (42%), Positives = 282/438 (64%), Gaps = 13/438 (2%)

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++    L ++  
Sbjct: 9   HMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKN 68

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG + T+   LE++
Sbjct: 69  DLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFDKLKLTPAKKTKTG-YSTSVDVLEKL 127

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +PI+ +IL++RQ+SKI+STY + L ++I +   ++HT +    T TGRL+S+EPNL
Sbjct: 128 EY-QSPIVADILDYRQISKIQSTYINGLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNL 185

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           QNIP+K + G++IR+AF+  P K+   L S DYSQ+ELR+LAH++    + + F+   DI
Sbjct: 186 QNIPVKLEEGKQIRKAFV--PCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDI 243

Query: 778 HRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++I  YF
Sbjct: 244 HAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYF 303

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+PIQGSA
Sbjct: 304 EQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSA 363

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A     
Sbjct: 364 ADIIKIAMIKMQSELEQRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAA---- 419

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL  +    +NW E
Sbjct: 420 QLDVPLIADANWGHNWYE 437


>gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall]
 gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall]
          Length = 875

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 202/539 (37%), Positives = 319/539 (59%), Gaps = 35/539 (6%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           KNT  ++ +   K+ FE++   KI ++ K  + +L + GI   G + DI L +Y++D  R
Sbjct: 364 KNT-KEQFIEVCKEIFESKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLIDPVR 422

Query: 501 SSHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             ++I+S+A ++L  +  R+ E LK                    I+  N++  L+ +L 
Sbjct: 423 KEYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLE 462

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            K+  + +  +  ++++P+ + +S ME  G ++D+D+L Q+  +    + S +  IY +S
Sbjct: 463 EKIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS 522

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
            E+FN++SPKQLG ILF KL  P   KTKTG + T A+ L+++    +PII  I  +RQL
Sbjct: 523 EEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQL 580

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           +KI STY + L   I++   ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ F
Sbjct: 581 TKIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVF 639

Query: 738 ISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           I P T    ++SADYSQIELR+LAHI+    +   F    DIH   A+E+F V IE+V+P
Sbjct: 640 I-PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTP 698

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            MR +AK +NF I+YGI  F L+  L I R EA  YI  Y  R+P +  Y+E       +
Sbjct: 699 LMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAIE 758

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYV TI  RR +  E+ S    ++   ER A+N+PIQGSAADI + AM++VH+ L++  
Sbjct: 759 KGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDN 818

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + ++LQ+HDEL+  V ++E+     ++   ME+     + L+V L V+I + NNW E
Sbjct: 819 FKSSIILQVHDELILNVHKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873



 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 176/297 (59%), Gaps = 13/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+     KE I   
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD
Sbjct: 54  YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ DKD +QL +    +  T K    +E  D   +++++G+ 
Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMVEEFGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L N   IK KK +EN+ E
Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291
           Y E A  S+KL  +  +VPI + LE +   E+ +  ++    + LEF  L+N+V  +
Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVREMFERLEFKSLMNKVGKS 290


>gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
 gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
          Length = 876

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAIDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +++ T  K  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133]
          Length = 876

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 182/346 (52%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +++ T  K   I  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAVIHFELDGGNYLRNNILKFSLFTG 341


>gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
          Length = 876

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 184/346 (53%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+  GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADIAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS-FLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  ++   +  +  +   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKNELFKKLEFKQLLADIDQSASVEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +I+ T  K  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00]
          Length = 876

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 230/642 (35%), Positives = 345/642 (53%), Gaps = 69/642 (10%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVE 425
           ++  +D QQ  +K+E      FK +   +D   S   AI  +     + D  D TS K  
Sbjct: 260 LMTHQDEQQ--EKIELFKKLEFKQLLADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEA 317

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY---------------------LKKFFENEHFLK 464
           TI  +L         G N L   IL +                     L  + EN +  K
Sbjct: 318 TIHFELD--------GGNYLRNNILKFSLFTGEKHIVINADDIINYAELVSWLENPNTKK 369

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL- 521
           + ++ K   +  HR GI ++    DIML SY++D  R+  D+ S+   +  S+ + ++  
Sbjct: 370 VVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSI 429

Query: 522 --KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LD 573
             K +K  +P D + +  V          I       +P +  +K L  Y +      L+
Sbjct: 430 YGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM--DKQLEEYNQVELLADLE 479

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D +GE FN++SPKQLG +L
Sbjct: 480 LPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVL 539

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQLSK++STY + L   I+
Sbjct: 540 FETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQLSKLQSTYVEGLQKVIS 597

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADY 750
              QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+AF   PT K   ++SADY
Sbjct: 598 D-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KPTSKDSVILSADY 654

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V   MRR AK +NF I+Y
Sbjct: 655 SQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVY 714

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  G+VET+  RR +  
Sbjct: 715 GISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIP 774

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +I S   ++R   ER A+N PIQGSAADI + AM+   + +++     K+LLQ+HDEL+F
Sbjct: 775 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIF 834

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 835 EVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 31/341 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+            
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLL------------ 283

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
                  DI+ + +   AIE   + +T+     F+SL + T
Sbjct: 284 ------ADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEAT 318


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 204/493 (41%), Positives = 304/493 (61%), Gaps = 15/493 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543
           DI+L SY+L++  +S D++ +A +  +   +  E +  K  K +IP DK       +H  
Sbjct: 401 DILLASYLLNTKDNSKDLSEVAMEHDYYDVSSDESVYGKGAKIAIPEDK---KVTYDHVA 457

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
                I  L   L   L       +++ ++ P+  V+++ME+TG++++   L ++  E +
Sbjct: 458 RKIKAIRILSKQLSDNLEKNVQTKLFDEMELPLSIVLAEMELTGVKVNDKRLMEMKEEFA 517

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             L  +E+ +Y+L+GEKFNL+SPKQLG ILF K+ +P   KTKTG + T    LEQ+   
Sbjct: 518 IRLNDIEQRVYELAGEKFNLNSPKQLGVILFEKMGYPVVKKTKTG-YSTAVDVLEQLKE- 575

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             PI+++ILE+RQ++KI+STY + L   I+K T ++HT Y      TGRL+S++PNLQNI
Sbjct: 576 QAPIVEHILEYRQIAKIQSTYIEGLLKVIDKETGKIHTRYMQTIAQTGRLSSVDPNLQNI 635

Query: 724 PIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           PI+ + G+KIR+AF+ S    K+ ++DYSQIELR+L H++    L + F    DIH   A
Sbjct: 636 PIRLEEGRKIRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLLKEAFIEGQDIHSSTA 695

Query: 783 AEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
             +FG++  E+VS +MRR AK +NF I+YGIS + L+  L I R EA  +I  YF ++PG
Sbjct: 696 MRVFGISSPEEVSSEMRRRAKAVNFGIVYGISDYGLSQNLGISRKEAQRFIDTYFEKYPG 755

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E      +  G+VET+F RR +  EINS   ++R+  ER AIN PIQGSAADI +
Sbjct: 756 VKTYMEDIVREAKDKGFVETLFHRRRYLPEINSRNFNLRSFAERTAINTPIQGSAADIIK 815

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI + + L++ KL   MLLQ+HDEL+FE PEEEI     ++V  ME A    + L VP
Sbjct: 816 IAMIKMDERLKESKLKATMLLQVHDELIFEAPEEEIEELKALVVEVMEGA----VELSVP 871

Query: 962 LKVNIKVSNNWQE 974
           LKV+     +W E
Sbjct: 872 LKVDSNSGKSWYE 884



 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 172/306 (56%), Gaps = 12/306 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M +   L L+DG+S  YRAF+A  + L   K+ +GL  NA+ GF NM+  +L    KE+ 
Sbjct: 1   MNERKKLVLIDGNSVAYRAFFALHSQLERMKNKNGLHTNALYGFHNMIDSVLT---KEN- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR+  + DYKA R K P     Q+P +R     FGI   E++ FEA
Sbjct: 57  PSHVLVAFDAGNTTFRHSFFDDYKAGRSKTPGEFSEQMPYLRELLDGFGIKHYELENFEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     +   + V +IS D+DL QL      +  TVK     ++   E + ++ G
Sbjct: 117 DDIIGTLATQVDPTIYDVVVISGDRDLTQLAKENVRVDITVKGVSELKEYTPESIHEEMG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ ++ L GD+ DNIPG+  IG KTA  LL+EYG++E I  N   +K+ K +EN+
Sbjct: 177 ISPLQIIDMKGLAGDASDNIPGVTKIGEKTALKLLKEYGSVEGIYENIDSLKKSKMKENL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT-Y 292
           +   ETA LS+KL  + TD PI + ++ L     N  +LI+F K ++F   ++++ T  Y
Sbjct: 237 INEKETAFLSKKLATIDTDSPIKVGIDDLNFSGPNMEKLIAFYKEMDFNSHLSKLDTAEY 296

Query: 293 DCDAAN 298
           D +  N
Sbjct: 297 DAEQNN 302


>gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus]
 gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20]
 gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131]
 gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 876

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +I+ T  K  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
          Length = 877

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 204/528 (38%), Positives = 311/528 (58%), Gaps = 21/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L ++ EN+H  KI  + K   +  HR  I+++  + D+ML SY++D  R+  D+ S+   
Sbjct: 359 LIEWLENDHNNKIVFDAKKTYVAAHRLEINLQHIDFDVMLASYIIDPSRTIEDVQSVVSY 418

Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  ++ + +I    K +K  +P+D +    ++ H       I     L+   L     + 
Sbjct: 419 YNQNFVKSDIAVYGKGKKRQVPLDDV----LEVHIAAIMQAIYNCKPLMSDILSDHNQMD 474

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   L+ P+  +++ ME TGI  D + LK++  E+ + L +L   IY+ +GE FN++SPK
Sbjct: 475 LLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAGESFNINSPK 534

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF  LK P   KTKTG + T    LEQ+  G +PII  ILE+RQLSK++STY + 
Sbjct: 535 QLGIVLFETLKLPIIKKTKTG-YSTAVDVLEQLQ-GKHPIIDYILEYRQLSKLQSTYVEG 592

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   I+   QR+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT     
Sbjct: 593 LQKVISD-DQRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSDDYV 649

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           ++SADYSQIELR+LAH+ +   L + F +  DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 650 ILSADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAMKVFGVEKDQVNDLMRRQAKAV 709

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       + NGYVET+  
Sbjct: 710 NFGIVYGISDYGLSQNLGITRKKAKAFIDDYLASFPGVKQYMTDIVKDAKANGYVETLLH 769

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+   K++ +     K+LLQ+
Sbjct: 770 RRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFDKNVRETNYHAKLLLQV 829

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FEVP+ E+   S+ +   M+ A    + L VPL V+      W
Sbjct: 830 HDELIFEVPKSEVQDFSEFVEEIMDNA----LTLAVPLLVDSSYGATW 873



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/292 (36%), Positives = 165/292 (56%), Gaps = 13/292 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RAFYA PLLS K  G+  NAI GF  +L K+L    KE   +HF V FD
Sbjct: 4   LVLIDGNSLSFRAFYALPLLSNKA-GIHTNAIYGFAMLLEKIL----KEEQPNHFLVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E Y +YK  R   P  L  Q P +R    A+ I   E++ +EADDII T + 
Sbjct: 59  AGKTTFRHEKYSEYKGGRQSTPPELSEQFPYIRQLLDAYHIKYYELENYEADDIIGTLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEKMV 180
            AE  G    II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P++++
Sbjct: 119 QAEASGLETIIITGDRDLTQLATDHVTIYYT-KKGVTDVDHYTPEFIAEKYNGLLPKQII 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+ G+G KTA  LL ++ ++E +  +   +  KK +EN+      A
Sbjct: 178 DMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFHSVEGVYNHLDEVSGKKLKENLENSKADA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPR-LISFLKALEFTKLINRVATT 291
            +S+ L  +  D PI + L+  I+ D N  +  I   + LEF +L+N + ++
Sbjct: 238 FMSKDLATINCDSPIKVNLKDTIMGDLNDNKDKIELFQKLEFKQLLNDIDSS 289


>gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg]
 gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg]
          Length = 994

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 187/490 (38%), Positives = 307/490 (62%), Gaps = 11/490 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D+ +  Y+L+   S+++  +IA+K+L     + KE+  S ++   +  +   Q ++ A  
Sbjct: 511 DVTIAGYLLEPDASTYEYQTIAEKYLELDLPSEKEVF-SGQTYASLSLLDQDQYKKAACY 569

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            S V   ++ +L   L    LL ++  ++ P++  +  ME  GI++D + LK  S ++  
Sbjct: 570 ESYVAHHIYPVLLKLLSERGLLPLFAGIEMPLVYTLYDMEQRGIRVDTNGLKDYSDQLGV 629

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +++ LE+ I++L G +FN++SPKQLG+ILF +L    G KTKTG + T+A+ LE+++  +
Sbjct: 630 SIVELEKQIFELVGVEFNINSPKQLGEILFQRLGLSYGKKTKTG-YSTSAEVLEKLSS-E 687

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +P+IK IL++RQL+K+KSTYAD L +++ +   R+H  ++     TGRL+S EPNLQNIP
Sbjct: 688 HPVIKLILQYRQLTKLKSTYADGLVSYV-EGDGRIHGTFNQTIAATGRLSSTEPNLQNIP 746

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           I+ +LG+KIR+ FI       + ADYSQIELR+LAH++    L + +  + DIHR+ A+E
Sbjct: 747 IRMELGRKIRKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASE 806

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F    ++V+   R +AK +NF I+YGIS F L   L I R EA +YI +YF  +PG+  
Sbjct: 807 VFHTPFDEVTSAQRSNAKAVNFGIVYGISSFSLGQDLDITRKEAEEYINKYFMTYPGVKT 866

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y++      ++ G V+T++GR      + +     R+  ER A+N+PIQG+AADI + AM
Sbjct: 867 YLDGLIEEGKETGVVKTLYGRIRPVPNLTNSNFMKRSAEERIAMNSPIQGTAADIMKLAM 926

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I V++ L++ KL +++LLQIHDEL+ E  E E+   ++I+   M++A     +L VPL+V
Sbjct: 927 IHVNQVLKERKLKSRLLLQIHDELLVETHESEVEEVAKIMKEEMQQAA----SLSVPLEV 982

Query: 965 NIKVSNNWQE 974
            +   NNW E
Sbjct: 983 EVANGNNWYE 992



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 135/282 (47%), Gaps = 48/282 (17%)

Query: 5   NHLFLVDGSSFIYRAFYAT------------------PLLSRKHDGLPVNAIAGFCNMLW 46
           ++L ++DGSS +   F+                    P + +   G+  NA+ GF  +L 
Sbjct: 19  DYLLVIDGSSLLSTQFFGNLPKEIMFAKTMEEKEKYFPKIMQTATGVYTNAVYGFLRVLL 78

Query: 47  KLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           K++++ +     ++ AV +D    TFR EIYPDYK NR +  E L  Q  L +   +  G
Sbjct: 79  KIIKDQK----PTYLAVAWDISRNTFRREIYPDYKGNRGETLEPLKDQFKLCQHVLKEMG 134

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKE--- 160
           I     + +EADD   T     E+E   + +++ D D +QL++  T L+    T K+   
Sbjct: 135 IVQFMDERYEADDFSGTLCQKFEEE-VPIRVMTKDNDYLQLITERTNLWLIHSTAKKTDE 193

Query: 161 --EKIDI----------------EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
             EK  +                E V K++GI P  +  L+ + GDS DNI G+PG+G  
Sbjct: 194 LYEKYGLSKKELNVPDRTFLFTPELVEKEFGIEPSSVPSLKGIGGDSSDNIKGVPGVGEA 253

Query: 203 TAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           TA  L++EY  +EN+    + + +  ++E I EY +T  + R
Sbjct: 254 TAVALIKEYKTVENLYEILNNLDETGKKE-INEYWKTLGIKR 294


>gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 876

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 230/642 (35%), Positives = 345/642 (53%), Gaps = 69/642 (10%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVE 425
           ++  +D QQ  +K+E      FK +   +D   S   AI  +     + D  D TS K  
Sbjct: 260 LMTHQDEQQ--EKIELFKKLEFKQLLADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEA 317

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY---------------------LKKFFENEHFLK 464
           TI  +L         G N L   IL +                     L  + EN +  K
Sbjct: 318 TIHFELD--------GGNYLRNNILKFSLFTGEKHIVINADDIINYAELVSWLENPNTKK 369

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL- 521
           + ++ K   +  HR GI ++    DIML SY++D  R+  D+ S+   +  S+ + ++  
Sbjct: 370 VVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSI 429

Query: 522 --KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LD 573
             K +K  +P D + +  V          I       +P +  +K L  Y +      L+
Sbjct: 430 YGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM--DKQLEEYNQVELLADLE 479

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D +GE FN++SPKQLG +L
Sbjct: 480 LPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVL 539

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQLSK++STY + L   I+
Sbjct: 540 FETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQLSKLQSTYVEGLQKVIS 597

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADY 750
              QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+AF   PT K   ++SADY
Sbjct: 598 D-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KPTSKDSVILSADY 654

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V   MRR AK +NF I+Y
Sbjct: 655 SQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVY 714

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  G+VET+  RR +  
Sbjct: 715 GISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIP 774

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +I S   ++R   ER A+N PIQGSAADI + AM+   + +++     K+LLQ+HDEL+F
Sbjct: 775 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIF 834

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 835 EVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 31/341 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+            
Sbjct: 236 NALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLL------------ 283

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
                  DI+ + +   AIE   + +T+     F+SL + T
Sbjct: 284 ------ADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEAT 318


>gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 878

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 204/526 (38%), Positives = 315/526 (59%), Gaps = 17/526 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L K+ ENE+  K+ ++ K   ++ HR  I+++    D ML SY+ D  R+  D+ S+   
Sbjct: 360 LIKWLENENSKKVVYDAKKTFVIAHRLNINIQNIVFDAMLASYIFDPSRTIDDVYSVVTN 419

Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  +Y ++++    K +K  +P  +I ++    H    +  I  +  L+  +L   + ++
Sbjct: 420 YHQTYVKEDVSIYGKGKKRHVPDTEILNT----HIASITKSIDAVKPLMEKELESHQQMN 475

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           + + L+ P+  ++S+ME  GI  D + L+ +  E+ + L  L + I+D +GE+FN++SPK
Sbjct: 476 LLKDLELPLARILSKMEEIGIYTDVNDLQHMQQELQEKLELLVQRIHDAAGEEFNINSPK 535

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF  LK P   KTKTG + T    LEQ+   ++PII +ILE+RQL+K++STY + 
Sbjct: 536 QLGVVLFETLKLPVIKKTKTG-YSTAVDVLEQLQ-NEHPIINDILEYRQLAKLQSTYVEG 593

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   I+   +R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF  S     ++
Sbjct: 594 LQKVIS-NDKRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPSSEDSVIL 652

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           SADYSQIELR+LAHI +   L + F +  DIH   A ++FGV  E+V+  MRR AK +NF
Sbjct: 653 SADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNF 712

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS + L+  L I R EA  +I  Y   FPG+ +Y+       + NGYVET+  RR
Sbjct: 713 GIVYGISDYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHRR 772

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  +I S   ++R   ER A+N PIQGSAADI + AM+   K ++      K+LLQ+HD
Sbjct: 773 RYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDKQVQHTSYKAKLLLQVHD 832

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FEVP+ E+   S  +   ME A    ++L VPLKV+      W
Sbjct: 833 ELIFEVPKSEVEEFSLFVEDIMEHA----LDLDVPLKVDSNYGPTW 874



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 158/288 (54%), Gaps = 13/288 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NAI GF  +L K++    +E   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAILGFAKLLEKII----REEQPTHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKHYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A++  F   I++ D+DL QL +    +Y T K+   D++H   ++      G+ P +
Sbjct: 117 SKEADQNDFETIIVTGDRDLTQLATQNVTIYYT-KKGVTDVDHYTPEFIAEKYNGLKPIQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GDS DNIPG+ G+G KTA  LL ++ ++E +  N  ++  KK +E +    E
Sbjct: 176 IIDMKGLMGDSSDNIPGVAGVGEKTAIKLLNQFDSVEGVYENIDKVSGKKLKEKLELSHE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCN-GPRLISFLKALEFTKLI 285
            A +S++L  +    PI + L    L D N     I   K LEF +L+
Sbjct: 236 DALMSKELATINRYSPIEVTLNDTKLSDINDNHEKIELFKKLEFKQLL 283


>gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 857

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 197/490 (40%), Positives = 307/490 (62%), Gaps = 20/490 (4%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           F D+ L++Y+LD    +++ + + + +           +  SI ID+  ++  +++    
Sbjct: 385 FYDVTLIAYLLDPTHVTYNRSYVGELF-----------KVPSIYIDE--NASFEQNGNMI 431

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           ++ +L L+      L+   +  +++ +++P+I+V+++ME  GI ID++  K+V   + + 
Sbjct: 432 ADFLLALYTSSYELLVKNDIEKLFKEVEQPLIEVLAEMEKNGISIDEENWKKVRKSMKEK 491

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
              L   IY  +GE+FN++SPKQL  ILF K+  P+G KTKTG + T A  LE +   D 
Sbjct: 492 EEKLLLEIYREAGEEFNVNSPKQLSHILFDKMGMPTGKKTKTG-YSTAADVLESLAI-DY 549

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P +KNILE+R L+K+ STY D++P  + K T+RVHT ++   T TGRL+S +PNLQNIP+
Sbjct: 550 PFVKNILEYRTLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNIPV 609

Query: 726 KTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +T+ G+ IR  F+        IS+DYSQ+ELR+LAH++    L + FEN  DIHR  A+E
Sbjct: 610 RTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTASE 669

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV  E+V+ + R HAK +NF IIYGIS F L+ QL I R +A +YIK Y  R+PGIHE
Sbjct: 670 VFGVPFEEVTSEQRSHAKAVNFGIIYGISDFGLSKQLGISRKKADEYIKTYLKRYPGIHE 729

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +++K     R+ G V+T+FGR     +INS     R+  ER A+N PIQGSAADI + AM
Sbjct: 730 FMKKMTEEARKTGKVKTLFGRYRDLPDINSKNFQRRSFAERTAMNTPIQGSAADIMKIAM 789

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I V++ ++  K  +++LLQ+HDELV E  +EE+   S+++  +ME      ++L+V L  
Sbjct: 790 IQVYEKMKKGKYKSRILLQVHDELVVEAVKEEVEEISKLLKETMESV----VSLKVKLVA 845

Query: 965 NIKVSNNWQE 974
           ++ V  NW E
Sbjct: 846 DVHVGKNWAE 855



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/263 (42%), Positives = 154/263 (58%), Gaps = 12/263 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L ++DGSS  YRAFYA PLLS  H+G+  NA+ GF  ML  L +N   E IA    V
Sbjct: 2   DKKLVIIDGSSLFYRAFYALPLLS--HNGIYTNAVYGFLRMLAGLYRNLDPEYIA----V 55

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRNEIY DYKA R   P  L+PQ  L++   +  G+   E+ G+E DDI+ T
Sbjct: 56  AFDKDRYTFRNEIYKDYKATRKSAPAELVPQFKLIKDLLRVMGVAVYEMAGYEGDDILGT 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
             +   K+   V I++ D+D +QL S    ++ T K      ++    V++K+GI P ++
Sbjct: 116 LAF-KYKDELPVLIVTGDRDSLQLSSEKVTVFLTQKGISNMAEMTPSAVVQKYGIKPSQI 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+ GIG KTA  LLQ+Y NLENI  N   IK  ++ + +L   E 
Sbjct: 175 IDMKALMGDTSDNIPGVKGIGEKTAVKLLQKYENLENIYKNIEEIKGAQKTK-LLSGKED 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262
           A LSR L  +R D+PI   LE +
Sbjct: 234 AYLSRNLAKIRIDIPINATLEEM 256


>gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1]
 gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981]
 gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 876

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 184/346 (53%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L++ +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLSDIDQSASVEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +I+ T  K  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102]
 gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102]
          Length = 876

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 184/346 (53%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E I  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGIYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L++ +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLSDIDQSASVEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +I+ T  K  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
 gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
          Length = 878

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 204/526 (38%), Positives = 316/526 (60%), Gaps = 17/526 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L K+ ENE+  K+ ++ K   ++ HR  I+++    D ML SY++D  R+  D+ S+   
Sbjct: 360 LIKWLENENSKKVVYDAKKTFVIAHRLNINIQNIVFDAMLASYIIDPSRTIDDVYSVVTN 419

Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  +Y ++++    K +K  +P  +I ++    H    +  I  +  L+  +L   + ++
Sbjct: 420 YHQTYVKEDVSIYGKGKKRHVPDTEILNT----HIASITKSIDAVKPLMEKELESHQQMN 475

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           + + L+ P+  ++S+ME  GI  D + L+ +  E+ + L  L + I+D +GE+FN++SPK
Sbjct: 476 LLKDLELPLARILSKMEEIGIYTDVNDLQHMQQELQEKLELLVQRIHDAAGEEFNINSPK 535

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF  LK P   KTKTG + T    LEQ+   ++PII +ILE+RQL+K++STY + 
Sbjct: 536 QLGVVLFETLKLPVIKKTKTG-YSTAVDVLEQLQ-NEHPIINDILEYRQLAKLQSTYVEG 593

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   I+   +R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF  S     ++
Sbjct: 594 LQKVIS-NDKRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPSSEDSVIL 652

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           SADYSQIELR+LAHI +   L + F +  DIH   A ++FGV  E+V+  MRR AK +NF
Sbjct: 653 SADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNF 712

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS + L+  L I R EA  +I  Y   FPG+ +Y+       + NGYVET+  RR
Sbjct: 713 GIVYGISDYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHRR 772

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  +I S   ++R   ER A+N PIQGSAADI + AM+   K ++      K+LLQ+HD
Sbjct: 773 RYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDKQVQHTSYKAKLLLQVHD 832

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FEVP+ E+   S  +   ME A    ++L VPLKV+      W
Sbjct: 833 ELIFEVPKSEVEEFSLFVEDIMEHA----LDLDVPLKVDSNYGPTW 874



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 158/288 (54%), Gaps = 13/288 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NAI GF  +L K++    +E   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAILGFAKLLEKII----REEQPTHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKHYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A++  F   I++ D+DL QL +    +Y T K+   D++H   ++      G+ P +
Sbjct: 117 SKEADQNDFETIIVTGDRDLTQLATQNVTIYYT-KKGVTDVDHYTPEFIAEKYNGLKPIQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GDS DNIPG+ G+G KTA  LL ++ ++E +  N  ++  KK +E +    E
Sbjct: 176 IIDMKGLMGDSSDNIPGVAGVGEKTAIKLLNQFDSVEGVYENIDKVSGKKLKEKLELSHE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCN-GPRLISFLKALEFTKLI 285
            A +S++L  +    PI + L    L D N     I   K LEF +L+
Sbjct: 236 DALMSKELATINRYSPIEVTLNDTKLSDINDNHEKIELFKKLEFKQLL 283


>gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
          Length = 867

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 309/538 (57%), Gaps = 21/538 (3%)

Query: 442 KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG 499
           +N L  E  L+YLK    +E   K G++IK   +     G+ + G+  D+ L SYVL+  
Sbjct: 344 ENALKDESFLAYLK----DETKKKYGYDIKSAVIGSRWNGVEINGYTFDLSLASYVLEPA 399

Query: 500 ---RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
                 +         + Y  +   K  K  IP     D+ + +H +  +  I +L  ++
Sbjct: 400 IKEELKYVCTHFDYDGVQYDEEVFGKGAKKHIP----DDALLAQHTVSKAKAIYELKDVV 455

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
             +L  +K   +YE ++ P+  ++ +ME  G +ID D+LK++     + +  L  +IY +
Sbjct: 456 TKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLDVLKEMDEAFDETIEKLSNDIYRI 515

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           SG  FN+SSPKQLG +LF  L    G KTKTG   +T+QD+ +     +P++  +LE+R 
Sbjct: 516 SGTTFNISSPKQLGQVLFEDLGLKGGKKTKTGY--STSQDVLEKIIDAHPVVPLVLEYRM 573

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L+K+ STY   L   +     ++HT Y    T TGRL+S++PNLQNIP++++ G+ IR+A
Sbjct: 574 LTKLSSTYLKGLQEQVFP-DNKIHTIYKQTLTHTGRLSSVDPNLQNIPVRSEEGKLIRKA 632

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F+S     L+S DYSQIELRILAH+A +T L   F    DIHR  AA +FGV  E+V+PQ
Sbjct: 633 FVSH-NGYLVSFDYSQIELRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQ 691

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MR  AK +NF IIYG+S FRL+  + +  +EA ++I +YF  +P +  Y+++     ++ 
Sbjct: 692 MRSQAKAVNFGIIYGMSEFRLSKDIGMSIAEARNFINKYFETYPEVKTYMDEVVEVCKKQ 751

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYV T+  R+ +   IN     +R   +R A+N PIQG+ ADI + AMI V K+L+ H L
Sbjct: 752 GYVSTLLNRKRYIPTINDKNFMVRQQAQRYAMNTPIQGTGADILKLAMIEVDKALKVHHL 811

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++M+LQ+HDEL+F+V E+E+     ++   ME  C   I + VPL V    + NW E
Sbjct: 812 KSQMILQVHDELIFDVFEDELEEVMSLVKEKMEN-C---IKMDVPLIVEGNYAKNWCE 865



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/286 (37%), Positives = 157/286 (54%), Gaps = 13/286 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S +++AFYAT          +G+P N + GF  M+ K+L N+ K  I     V
Sbjct: 4   LILIDGNSLLFKAFYATSYTGNYMVNRNGIPTNGVYGFARMVDKILDNNPKYVI-----V 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FDY   TFRNE+   YKA R + PE L+PQ  L R    A  I   E++GFE DDII T
Sbjct: 59  AFDYGKKTFRNELLDTYKAQRKETPEELIPQFSLAREYLTAHNITWYEVEGFEGDDIIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDI---EHVIKKWGIPPEKM 179
                EK    V++ + DKD  QL+SP T +Y T+K   ++DI   + ++ K+G+ P+++
Sbjct: 119 LVDFGEKNNLKVSVYTGDKDAFQLISPQTTIYRTIKGVTELDIYNEQTLLDKYGLKPDQI 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
                L GD+ DNIPGI G+G KTA  LL +Y  +E +  + + +K  K  E I    E 
Sbjct: 179 RDFLGLMGDTADNIPGIKGVGEKTALKLLHQYETIEGLEEHQNELK-GKMGEKIRAGMED 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           A +S+K+  +  DVP+ + L+    E  +   L SF +  +   LI
Sbjct: 238 ALMSKKVATILRDVPLDVDLKKAEYEGYDYDTLKSFYETYDMNSLI 283


>gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 876

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASIEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +I+ T  K  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 877

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 222/610 (36%), Positives = 344/610 (56%), Gaps = 66/610 (10%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           N KD+    +K + I    FK + D  +  HS+  ++AI T   KD  ++ +E       
Sbjct: 304 NLKDLIDSSKKTKEI---FFKSVYDGENYIHSEIYSLAIKT---KDTDTYIIEP------ 351

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIML 491
                          E +S LK  FE++   KI  +IK + ++L +  I + G ++D+ML
Sbjct: 352 ---------------EKISELKNIFEDKTINKISFDIKEEMVLLDKLDIDLIGPYDDLML 396

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI---------------PIDKISDS 536
           M Y++D  RSS+D+  ++Q +L+Y     L S +S I                + K+  S
Sbjct: 397 MHYLIDPSRSSYDLKLLSQSYLTYE----LDSDESLIGKGAKTKKYAEVDQDDLAKLLAS 452

Query: 537 QVQEHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           QV  +AIE+S          R K    L   +++ +YE ++K +  V++ MEI G   D+
Sbjct: 453 QV--NAIEDS----------RDKVFKNLAEYEMVDLYENIEKRLARVLASMEIIGFGTDR 500

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L+ + A++ K + ++   IYDL+G +FN++S KQLG++LF  L  P   KTKTG + T
Sbjct: 501 KILEGLKADLEKQIEAITSEIYDLAGSEFNINSTKQLGEVLFKDLDLPVVKKTKTG-FST 559

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ LE++    +PII+ I  +R++ K++STY + L N I++   R+ + +      TGR
Sbjct: 560 DAKVLEKLR-DKHPIIEKIERYREIYKLRSTYIEGLENAIDE-DGRIRSTFRQNIASTGR 617

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQN+PIKTD G+ IR+AF +   K LI ADYSQIELRILA +A    +   F 
Sbjct: 618 LSSQEPNLQNLPIKTDEGRAIRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFN 677

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +DIH   A+E+F   +++V+   R  AK +NF IIYGIS + L+  L IPR  A +YI
Sbjct: 678 RGIDIHTQTASEVFHTPLDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRPRAKEYI 737

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +Y   +P I EY++      R  GY+ET+F RR +  EI+S   ++R+  ER A+N PI
Sbjct: 738 DKYKKSYPQIKEYMDDVVQLARSQGYIETLFKRRRYIPEISSRNFNVRSFGERIALNTPI 797

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI  +  L++  L  K++LQIHDE++ E  E++   A  I+   ME A 
Sbjct: 798 QGTAADIIKIAMIDTYNKLKEEGLDAKIILQIHDEIIIESSEKDKEKARDILKKCMEGAA 857

Query: 953 LPKINLRVPL 962
             K++L V +
Sbjct: 858 KLKVDLLVDI 867



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 176/342 (51%), Gaps = 17/342 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DGSS I+RAF+A P LS  +DG+  N + GF  M     +N+  +    +  V FD
Sbjct: 5   VMLIDGSSLIFRAFFALPNLSN-NDGVMTNGVYGFLTMY----RNAFDKYKPDYVLVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFRN+ Y DYKANR K P  L  Q  +++    + G+   ++ GFEADDI+ TY  
Sbjct: 60  RSSKTFRNDEYKDYKANRDKTPNELSYQFGILKDVLDSMGVKYTDLDGFEADDIVGTYAR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIPPEKMVCL 182
           +A++ G    +I+ D+D +QLV     +Y + K     +E+ + K    +GI P++++ +
Sbjct: 120 MAKEAGDEAVLITGDRDYLQLVDDNVLVYLSKKGVSDTVEYTVDKIKEEYGITPKQLIDV 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+ GIG K A   +++YG++EN+  N   I  KK +E++      A +
Sbjct: 180 KGLMGDKSDNIPGVDGIGEKRALEFIRKYGSIENLYDNLDEISGKKTKESLENNEAVAYM 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+K+  + T  P+    + L L + +   L      L F K +  +    D D +  E  
Sbjct: 240 SKKIGTIVTHAPVEFDYDDLALGEVDKEGLREKFSKLNFNKFLEEL----DGDGSESESK 295

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
                 T   G  ++  ID     K   F S+ D  + I+SE
Sbjct: 296 EF----TYKIGGNLKDLIDSSKKTKEIFFKSVYDGENYIHSE 333


>gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122]
 gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122]
          Length = 876

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DILMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++G +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFGTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASIEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +++ T  K  AI  E+      R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAAIHFELHGGNYLRNNILKFSLFTG 341


>gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP]
 gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP]
          Length = 897

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 171/410 (41%), Positives = 264/410 (64%), Gaps = 8/410 (1%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
           L +Y  ++KP+  V+++ME  G+++D + L+ +S  +++ L  LE  I++ +G +F++ S
Sbjct: 493 LKLYTEVEKPLSGVLARMEARGVRLDSEYLQGLSLALAERLERLEAQIHEAAGREFSIRS 552

Query: 626 PKQLGDILFTKLKFPSGAKTK-TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
             QL  +L+ +L   SG KTK TG+  T    LE +   ++PII  ILE+R+L K++ TY
Sbjct: 553 RDQLEAVLYDELGLASGKKTKLTGKRSTAMTALEPLRD-EHPIIPLILEYRELEKLRGTY 611

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D LP  +N RT R+HT ++  +  TGRL+SL PNLQNIPI+++ G++IR+ FI+    +
Sbjct: 612 LDPLPRLVNPRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEEGRQIRKGFIADGGFR 671

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L++ADYSQ+ELR++AHIA   P+ + F+   DIHR  AA++ G++   V    RR AKT+
Sbjct: 672 LVAADYSQLELRLMAHIAGDEPMQRAFQEGADIHRRTAAQVLGLDESTVDVNQRRAAKTV 731

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF ++YG+S  RL+ +L IP +EA  +I+ YF  +PGI  YIE+T  F RQ+GYVET++G
Sbjct: 732 NFGVLYGMSAHRLSNELGIPYAEATSFIENYFGIYPGIQRYIEETLEFGRQHGYVETLYG 791

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  E+ +   ++R   ER A N PIQG+AADI + AM+++   L+   L  +MLLQ+
Sbjct: 792 RRRYVPELKARNRNLREAGERLAYNMPIQGTAADIMKMAMVALEPQLD--ALGARMLLQV 849

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+ E P +     + +    ME      + L VPL V   +S+NW E
Sbjct: 850 HDELLIEAPADRAEEVAALTRQVMEGV----VELNVPLAVEAGISDNWYE 895



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 141/260 (54%), Gaps = 19/260 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG +  YR+++A P LS    G   +AI GF     +L +        +   V+FD
Sbjct: 13  LVLIDGHALAYRSYFALPPLS-NSGGESTHAIVGFMRQALRLARQK-----GNQLVVVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+E Y DYK+ R + P  L PQ+  +R    A G P +E +G+EADD+IA+ T 
Sbjct: 67  PPGGTFRHEQYEDYKSGRAETPSDLPPQIRRIRELVDALGWPRLEEKGYEADDVIASLTR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-----IEHVIKKWGIPPEKMVC 181
            A++EG  V I+++D+D  QL      L D VK  K D      E V+ K+G+  E+ V 
Sbjct: 127 RAQREGMEVRILTSDRDAYQL------LADDVKVIKNDNSLFGPEDVLDKYGVTVEQWVD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGN--LENILINASRIKQKKRRENILEYAET 239
            +ALTGD+ DNIPG  GIG KTA  +LQEYG          A  ++ K  R+ +L+  + 
Sbjct: 181 FRALTGDASDNIPGAKGIGPKTATKILQEYGTLDAALDAAKAGTLQPKGTRQKLLDSEDA 240

Query: 240 ARLSRKLVMLRTDVPITIPL 259
            R SR+L  +  D+ +   L
Sbjct: 241 VRFSRELSQMVCDLELACEL 260


>gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 876

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 230/642 (35%), Positives = 344/642 (53%), Gaps = 69/642 (10%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVE 425
           ++  +D QQ  +K+E      FK +   +D   S   AI  +     + D  D TS K  
Sbjct: 260 LMTHQDEQQ--EKIELFKKLEFKQLLADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEA 317

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY---------------------LKKFFENEHFLK 464
           TI  +L         G N L   IL +                     L  + EN +  K
Sbjct: 318 TIHFELD--------GGNYLRNNILKFSLFTGEKHIVINADDIINYAELVSWLENPNTKK 369

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL- 521
           + ++ K   +  HR GI ++    DIML SY++D  R+  D+ S+   +  S+ + ++  
Sbjct: 370 VVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSI 429

Query: 522 --KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LD 573
             K +K  +P D + +  V          I       +P +  +K L  Y +      L+
Sbjct: 430 YGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM--DKQLEEYNQVELLADLE 479

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D +GE FN++SPKQLG +L
Sbjct: 480 LPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVL 539

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQLSK++STY + L   I+
Sbjct: 540 FETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQLSKLQSTYVEGLQKVIS 597

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADY 750
              QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+AF   PT K   ++SADY
Sbjct: 598 D-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KPTSKDSVILSADY 654

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V   MRR AK +NF I+Y
Sbjct: 655 SQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVY 714

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  G+VET+  RR +  
Sbjct: 715 GISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIP 774

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +I S   ++R   ER A+N PIQGSAADI + AM+     +++     K+LLQ+HDEL+F
Sbjct: 775 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAHKMKETTYQAKLLLQVHDELIF 834

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 835 EVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 31/341 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+            
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLL------------ 283

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
                  DI+ + +   AIE   + +T+     F+SL + T
Sbjct: 284 ------ADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEAT 318


>gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613]
          Length = 875

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 198/538 (36%), Positives = 317/538 (58%), Gaps = 34/538 (6%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501
           N   ++ +   ++ FE++   KI ++ K  + +L + GI   G + DI L +Y+++  R 
Sbjct: 364 NNTKEQFIEVCREMFESKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLINPVRK 423

Query: 502 SHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            ++I+S+A ++L  +  R+ E LK                    I+  N++  L+ +L  
Sbjct: 424 EYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLEE 463

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           K+  + +  +  ++++P+ + +S ME  G ++D+D+L Q+  +    + S +  IY +S 
Sbjct: 464 KIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE 523

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E+FN++SPKQLG ILF KL  P   KTKTG + T A+ L+++    +PII  I  +RQL+
Sbjct: 524 EEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLT 581

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           KI STY + L   I++   ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ FI
Sbjct: 582 KIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI 640

Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            P T    ++SADYSQIELR+LAHI+    +   F    DIH   A+E+F V IE+V+P 
Sbjct: 641 -PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPL 699

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MR +AK +NF I+YGI  F L+  L I R EA  YI  Y  R+P +  Y+E       + 
Sbjct: 700 MRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVEK 759

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYV TI  RR +  E+ S    ++   ER A+N+PIQGSAADI + AM++VH+ L++   
Sbjct: 760 GYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDNF 819

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++LQ+HDEL+  V ++E+     ++   ME+     + L+V L V+I + NNW E
Sbjct: 820 KSSIILQVHDELILNVHKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873



 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 188/346 (54%), Gaps = 32/346 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+     KE I   
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR+E Y DYKA R K+PE L  Q P+++    A  I   EI GFEADD
Sbjct: 54  YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIIKELLSALAINIFEIDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ DKD +QL + +  +  T K    +E  D   +++++G+ 
Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDSVKVVITKKGITEKEIYDKNRMVEEFGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +  N   IK KK +EN+ E
Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVFENIENIKGKKLKENLHE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           Y E A  S+KL  +  +VPI + LE +   E+ +  ++    + LEF  L+N+V      
Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVREMFERLEFKSLMNKVGKG--- 290

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
                           N+G  +E E+     +   +F  L +   K
Sbjct: 291 ----------------NEGETVEEEVSYKNIVSLEEFRDLKNNIIK 320


>gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
          Length = 879

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 203/515 (39%), Positives = 311/515 (60%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL-- 521
           ++ K  K++L   GI + +   D  L +Y+L S    +++A+IA+    L+    E++  
Sbjct: 373 YDFKRSKVLLSHLGIDLPQANYDARLANYLL-SNIEDNELATIARLHTNLNMEADEVVYG 431

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K + P     D  + +H      V++    ++  KL V K   +Y  ++ P+ +V++
Sbjct: 432 KGVKRAFP----EDEALFDHLARKIQVLVDSKAVILDKLAVNKEEDLYFDIELPLANVLA 487

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI +++  L++++ +    + SL E IY+++GE+FN++SPKQLG ILF K++ P 
Sbjct: 488 KMEIAGITVNKTALQEMAEQNKAVIESLTEEIYEMAGEEFNINSPKQLGSILFEKMQLPL 547

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ+SK++STY   L ++I     ++HT
Sbjct: 548 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQISKLQSTYVIGLQDYI-MSDGKIHT 606

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S +PNLQNIP++ + G+ IR+AF+ S     L+S+DYSQIELR+LAH
Sbjct: 607 RYIQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFLPSSEDAVLLSSDYSQIELRVLAH 666

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F+ + DIH   A  +FG+  E+ V+P  RR+AK +NF I+YGIS F L+ 
Sbjct: 667 ISGDEHLIAAFKENADIHTSTAMRVFGIEKEEDVTPNDRRNAKAVNFGIVYGISDFGLSN 726

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A DYI+ YF R+PGI EY+E      R  GYVET+F RR    +INS   +I
Sbjct: 727 NLGITRKKAKDYIETYFERYPGIKEYMETVVRDARDTGYVETLFNRRRELPDINSRNFNI 786

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L + +   KMLLQ+HDE+V EVP +E+  
Sbjct: 787 RSFAERTAINSPIQGSAADILKIAMINLDKALSEGQFKAKMLLQVHDEIVLEVPNDELEA 846

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ++  +ME A    ++L VPL  +      W E
Sbjct: 847 IKALVKKTMEGA----VDLAVPLLADENTGKTWYE 877



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/295 (39%), Positives = 164/295 (55%), Gaps = 17/295 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+K+N L L+DGSS  +RAF+A  L S     +   GL  NAI GF  ML  +++  +  
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA--LYSQIDRFKNQSGLHTNAIYGFHLMLDHMMKRIQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E++ DYKA R K P+    Q P +R    A G+P  ++  +
Sbjct: 57  --PTHILVAFDAGKTTFRTEMFADYKAGRAKTPDEFREQFPYIREMLTALGVPFYDLANY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AEK    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAEKTEVPFDVTIVSGDKDLIQLTDANTVVEISRKGVTDFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ PE+ + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N    K  K 
Sbjct: 175 EKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYENIDSFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           +EN++   E A LS+ L  + T+ PITI LE L+    N   L+ F   ++F +L
Sbjct: 235 KENLINDKEQAFLSKTLATINTESPITIGLEDLVYHGPNVQVLMEFYDEMDFKQL 289


>gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 883

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 195/504 (38%), Positives = 315/504 (62%), Gaps = 14/504 (2%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDK 532
           L+R  I+++  + D++L+SY+L++  +S+D+ ++A+   + +    E +  + +   ID 
Sbjct: 387 LYRSSITLQNVDFDMLLVSYLLNTTNNSNDVGTVAKLHGFANIKTDEEVYGKGAKKKIDP 446

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            +  +  +H +  +  I QL   +   L       +Y  ++  +  V+++MEI GI+++ 
Sbjct: 447 EA-PEFFDHIVHKAKAIDQLHNDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNP 505

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L+Q+ ++  + L  +E+ I+  +GE+FN+ SPKQLG ILF K++ P   KTKTG + T
Sbjct: 506 ETLEQMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGHILFEKMRLPILKKTKTG-YST 564

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   LE++   D PI++N+L +RQ+SK++STY D L   I+K   +VHT Y    T TGR
Sbjct: 565 SVDVLEKL-APDAPIVQNVLNYRQISKLQSTYIDGLLKVIHKNDSKVHTRYLQTLTQTGR 623

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIP++++ G+ IR+AF+ S    ++ S+DYSQIELR+LA I     + + F
Sbjct: 624 LSSVDPNLQNIPVRSEEGRLIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNMQEAF 683

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               DIH   A  IFG+ + + V+P++RR AK +NF I+YGIS + LA    I R +A  
Sbjct: 684 REGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQ 743

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  +PG+ +Y E    F + +GYVETI  RR +  +I+S   ++R+  ER A+N 
Sbjct: 744 FIQRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNT 803

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI++ ++L+   L T+MLLQ+HDEL+FEVP +E+ T  ++I   M+ 
Sbjct: 804 PIQGSAADIIKIAMINMDEALK--PLKTRMLLQVHDELIFEVPNDEMETVEKLIPKVMDS 861

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    I L +PLKV       W E
Sbjct: 862 A----IKLNIPLKVESHWGKTWYE 881



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 157/291 (53%), Gaps = 12/291 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  ++AFYA    L R     GL  +AI GF  ML K+LQ  +   I     V
Sbjct: 5   LLLIDGNSIAFKAFYALYNSLERFTNSSGLHTSAIYGFNRMLDKVLQEEKPTDIL----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR +++ DYK NR K P  L  Q P +R   +A GI + E+  +EADDII T
Sbjct: 61  AFDAGKTTFRTKMFSDYKGNRAKTPTELSEQFPFIRELVKARGISSYELPDYEADDIIGT 120

Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178
               AE +G + V I++ D+DL QL S  T +      T   EK   +HV +K G+ P +
Sbjct: 121 LAKEAEDKGDYQVVILTGDRDLTQLTSDKTTVQISKKGTTDLEKYTPQHVEEKLGVKPSQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DN PG+  +G KTA  L+Q++G++ENI  N   +  K  +E++L   +
Sbjct: 181 IIDIKGLKGDNSDNYPGVTKVGDKTAMKLVQQFGSIENIYSNIDHVSGKMLKEHLLNDKD 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            A   + L  ++ D PI + L+ L  E  N  RL  F + + F   ++ + 
Sbjct: 241 KAERGKVLATIKRDAPIKVSLDDLKYEGDNLDRLTDFYERMGFKSFLSNLG 291


>gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1]
 gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I
 gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1]
          Length = 956

 Score =  347 bits (890), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 192/500 (38%), Positives = 292/500 (58%), Gaps = 41/500 (8%)

Query: 481 ISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +S+RG      +D +L +Y+LD   ++  +  +A+++L               P D  + 
Sbjct: 486 LSVRGTVVEPGDDPLLYAYLLDPANTNMPV--VAKRYLD-----------REWPADAPTR 532

Query: 536 SQVQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           + +  H             LLR  P L+ +    +Y+ ++KP+  V+ +ME+ G+Q+D D
Sbjct: 533 AAITGH-------------LLRELPPLLDDARRKMYDEMEKPLSGVLGRMEVRGVQVDSD 579

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKT 652
            L+ +S +    L  LE  I++ +GE+F++ SPKQL  +L+ KL+  S  KTK TGQ  T
Sbjct: 580 FLQTLSIQAGVRLADLESQIHEYAGEEFHIRSPKQLETVLYDKLELASSKKTKLTGQRST 639

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
               LE +    +PII  +LE+R+L K++ TY D +PN +N  T R+HT ++  +  TGR
Sbjct: 640 AVSALEPLRDA-HPIIPLVLEFRELDKLRGTYLDPIPNLVNPHTGRLHTTFAQTAVATGR 698

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+SL PNLQNIPI+++LG++IR+ FI+     LI+ADYSQIELR+LAHIA    + Q F 
Sbjct: 699 LSSLNPNLQNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFV 758

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AA++ G++   V    RR AKT+NF ++YG+S  RL+  L IP +EAA +I
Sbjct: 759 EGADIHRRTAAQVLGLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAATFI 818

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF  +PGI  YI  T +F R +GYVET++GRR +   ++S     R   ER A N PI
Sbjct: 819 EIYFATYPGIRRYINHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNMPI 878

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AM+ +   L+   +  +MLLQ+HDEL+ E P ++    + +    ME   
Sbjct: 879 QGTAADIMKLAMVQLDPQLD--AIGARMLLQVHDELLIEAPLDKAEQVAALTKKVMENV- 935

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              + L+VPL V +    NW
Sbjct: 936 ---VQLKVPLAVEVGTGPNW 952



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 167/330 (50%), Gaps = 39/330 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K + L L+DG +  +R+++A P L+    G   +AI GF  +L +L +    + I     
Sbjct: 45  KPDTLVLIDGHALAFRSYFALPPLNNSK-GEMTHAIVGFMKLLLRLARQKSNQVI----- 98

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD P  TFR+E Y  YK+ R + PE L  Q+  +R    A G P +E  G+EADD+IA
Sbjct: 99  VVFDPPVKTFRHEQYEGYKSGRAQTPEDLPGQINRIRALVDALGFPRLEEPGYEADDVIA 158

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           + T +AE +G+ V I+++D+D  QL+     +        I    V +K+G+   + V  
Sbjct: 159 SLTRMAEGKGYEVRIVTSDRDAYQLLDEHVKVIAN-DFSLIGPAQVEEKYGVTVRQWVDY 217

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETA 240
           +ALTGD+ DNIPG  GIG KTAA LLQEYG LE +    +A  +K    R+ +L+  E  
Sbjct: 218 RALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEKVYEAAHAGTLKPDGTRKKLLDSEENV 277

Query: 241 RLSRKLVMLRTDVPITI-------PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           + S  L  + TD+P+ I       P   L+ ED         L  LE   L         
Sbjct: 278 KFSHDLSCMVTDLPLDIEFGVRRLPDNPLVTED--------LLTELELHSL--------- 320

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRD 323
                  P++L +N  E  G A +  ++R+
Sbjct: 321 ------RPMILGLNGPEQDGHAPDDLLERE 344


>gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG]
          Length = 881

 Score =  347 bits (889), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 306/508 (60%), Gaps = 29/508 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           HR G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P D
Sbjct: 387 HRLGLKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQVPED 446

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+    + E     S  +  L   L   L  ++   ++  ++ P+  V+++MEI GI ++
Sbjct: 447 KL----LFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLN 502

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG++LF KL  P   KTKTG + 
Sbjct: 503 AQTLKDMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG-YS 561

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-----PNHINKRTQRVHTFYSLA 706
           T+   L ++    +PI+++IL++R  +K+ STY   L     P+H      ++HT Y   
Sbjct: 562 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTYVVGLLKAQMPDH------KIHTRYLQT 614

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PN+QNIP + D G+ IR+AF+ S P  ++ S+DYSQIELR+L+HI+   
Sbjct: 615 LTQTGRLSSVDPNMQNIPAR-DEGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            + Q F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + LA  + I 
Sbjct: 674 NMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGIS 733

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  +I  YF ++P +H+Y+E      R++GYVET+F RR +  +I+S   ++R   E
Sbjct: 734 RKQAKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAE 793

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE P  E+    Q++
Sbjct: 794 RTAMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLV 853

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
              M+ A    ++L VPLKV       W
Sbjct: 854 PKIMDSA----VSLAVPLKVESHYGPTW 877



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 162/299 (54%), Gaps = 17/299 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAF+A    L R    DGL  NAI  F NML  +L++ + ++ 
Sbjct: 1   MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDAA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 61  L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+  TI++ D+DL QL +  T +  TVK     E    EHV +K G
Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL++YG++EN+  N   +K  K +E++
Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIENLYANIDAMKTSKMKESL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVA 289
           +   + A LS++L  +  D P+TI L  +     NGP   +L  F   +    L+ ++ 
Sbjct: 237 INDKDKAYLSKQLATIDRDAPVTIDLADV---KYNGPDLAKLRDFYTKMNMNSLLKKIG 292


>gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
 gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
          Length = 871

 Score =  347 bits (889), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 176/423 (41%), Positives = 272/423 (64%), Gaps = 11/423 (2%)

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           LW  L+  L+    + V    + P++  +  ME+ G++++ + LK    ++   ++ LE+
Sbjct: 458 LWKRLKECLMDRLFMDV----EMPLVFTLYDMEVNGVRVEAEALKYYGDQLGAKIVELEK 513

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
           +IY+ +GE FN++SPKQLG +LF  +K P G KTKTG + T A  LE++   D PII  I
Sbjct: 514 DIYEEAGENFNINSPKQLGVVLFENMKIPGGKKTKTG-YSTAADVLEKL-APDYPIIAKI 571

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           LE+RQ +K+KSTYAD L N+I +   R+H+ ++   T TGRL+S EPNLQNIPI+ +LG+
Sbjct: 572 LEYRQYTKLKSTYADGLANYI-REDGRIHSKFNQTITATGRLSSTEPNLQNIPIRVELGR 630

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
            IR+ FI       + ADYSQIELR+LAH +  + L + ++   DIHR+ A+++F +  +
Sbjct: 631 LIRKVFIPEDGFVFVDADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRITASQVFHIPFD 690

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+ Q RR+AK +NF I+YGIS F L+  L I R EA+ YI+ YF  +PGI  +++ T  
Sbjct: 691 EVTDQQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASKYIEDYFTAYPGIKIFLDDTVK 750

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
             ++ GYV T+FGRR    E++S     R+  ER A+NAPIQG+AADI + AM  V + L
Sbjct: 751 HAKEMGYVVTLFGRRRPVPELSSSNYMQRSFGERVAMNAPIQGTAADIIKIAMTGVGRRL 810

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           ++ K+ ++++LQ+HDEL+ E  + E+    +I+   ME+A     +L VPL++++    N
Sbjct: 811 KEQKMKSRLVLQVHDELLVEAYKPELDQVKKILKEEMEQAA----SLDVPLEIDMHTGEN 866

Query: 972 WQE 974
           W E
Sbjct: 867 WYE 869



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 159/291 (54%), Gaps = 11/291 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   DGL  NAI GF  +++K+L+  + +    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGLPDLTNA-DGLHTNAIYGFLTIMFKILEEEKPD----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E+Y +YK  R  + + L  Q+P+++   +A GI  IE  G EADD+I T + 
Sbjct: 60  VHAPTFRHEMYEEYKGTRKPMADELRQQVPVIKEVLKAMGIRIIEQAGLEADDLIGTLSK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPEKMV 180
              ++G  V++IS D+DL+QL +    +     K+ + ++E      V +++ + P + +
Sbjct: 120 RCAQKGMEVSVISGDRDLLQLATEQVKIRIPKTKQGRTEVEDYYAQDVKERYQVTPTEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+P IG KTA  ++ EY ++E    +   +K  +  + + E+ + A
Sbjct: 180 DLKALMGDASDNIPGVPSIGEKTATKIITEYHSIEEAYAHVDEVKPPRASKALKEHWDMA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +S++L  +  D      LE   L +       ++ + L+F  L+ R   T
Sbjct: 240 VMSKRLATINVDADFPYELEEAKLGNIYTEEAYAYFQKLQFKNLLQRFDVT 290


>gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583]
 gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583]
          Length = 880

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 186/489 (38%), Positives = 303/489 (61%), Gaps = 9/489 (1%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           D  L +Y+L+  +S +    IA+++L   +  KE L  + S I      + ++ +     
Sbjct: 397 DAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGKLSYIKAANEKEEELAKSVCYM 456

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           +   L+    L   L  E +  +Y  ++ P++  ++ ME  GI ++ + LK+   ++   
Sbjct: 457 AYTALKSRTSLLEALEKENMKELYTDMEMPLLFTLADMEKEGILVEAEALKEYGEKLQVR 516

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           + +LE+ I++ +GE+FN++SPKQLG ILF KL+ P G KTKTG + T A  LE++   ++
Sbjct: 517 IEALEKEIWEQAGEEFNINSPKQLGVILFEKLELPGGKKTKTG-YSTAADVLEKL-APEH 574

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            ++ +ILE+RQL+K+KSTYAD L N+I +   R+H+ ++   T TGR++S EPNLQNIP+
Sbjct: 575 KLVADILEYRQLTKLKSTYADGLANYIAE-DGRIHSTFNQTITATGRISSTEPNLQNIPV 633

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +T+LG+ +R+ FI       + ADYSQIELR+LAH++    L Q ++ + DIHR+ A+++
Sbjct: 634 RTELGRLLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQV 693

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F +  ++V+P  RR+AK +NF I+YGIS F L+  L I R EAA YI+ YF  +P I  +
Sbjct: 694 FHIPFDEVTPLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQYIESYFQTYPKIKGF 753

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++      ++ GYV T+F RR    E+ S     R+  ER A+N+PIQG+AADI + AMI
Sbjct: 754 LDGLVEEAKEKGYVSTLFHRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMI 813

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V+K L++  L ++++LQ+HDEL+ E  +EE+   S I+   M++A     +L V L+++
Sbjct: 814 RVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEAA----HLSVALEID 869

Query: 966 IKVSNNWQE 974
           +    NW E
Sbjct: 870 MHTGENWYE 878



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 162/291 (55%), Gaps = 11/291 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NAI GF N+L+K+L+  + +    +  V FD
Sbjct: 5   ILLIDGHSILNRAFYGLPDLTNA-EGLHTNAIYGFLNILFKILEEEKPD----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y  YK  R  +P  L  Q+P+++    A G+  I  +G+EADD++ T   
Sbjct: 60  LHAPTFRHKQYEAYKGTRKPMPMELREQIPVMKDVLSAMGVTMITKEGYEADDLLGTVAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180
            +E++G  VTI+S D+DL+QL S   C+     K  K  IE      V + + + P +++
Sbjct: 120 KSEEKGMDVTILSGDRDLLQLASSHICIRIPKTKGGKTTIEDYYENDVKEAYQLTPLQII 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+PG+G KTA  +L EYG +EN   +A  +K  K +   LE+ + A
Sbjct: 180 ELKALMGDTADNIPGLPGVGEKTATKILLEYGTVENAKAHAEELKPNKAKTAFLEHYDLA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            LS++L  +  D PI    E   + +   P    F K LEF   ++R   T
Sbjct: 240 VLSKELATICIDSPIEYDWEGAKIHNLYTPEAYEFFKELEFKNFLSRFEDT 290


>gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 880

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 186/489 (38%), Positives = 303/489 (61%), Gaps = 9/489 (1%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           D  L +Y+L+  +S +    IA+++L   +  KE L  + S I      + ++ +     
Sbjct: 397 DAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGKLSYIKAANEKEEELAKSVCYM 456

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           +   L+    L   L  E +  +Y  ++ P++  ++ ME  GI ++ + LK+   ++   
Sbjct: 457 AYTALKSRTSLLEALEKENMKELYTDMEMPLLFTLADMEKEGILVEAEALKEYGEKLQVR 516

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           + +LE+ I++ +GE+FN++SPKQLG ILF KL+ P G KTKTG + T A  LE++   ++
Sbjct: 517 IEALEKEIWEQAGEEFNINSPKQLGVILFEKLELPGGKKTKTG-YSTAADVLEKL-APEH 574

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            ++ +ILE+RQL+K+KSTYAD L N+I +   R+H+ ++   T TGR++S EPNLQNIP+
Sbjct: 575 KLVADILEYRQLTKLKSTYADGLANYIAE-DGRIHSTFNQTITATGRISSTEPNLQNIPV 633

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +T+LG+ +R+ FI       + ADYSQIELR+LAH++    L Q ++ + DIHR+ A+++
Sbjct: 634 RTELGRLLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQV 693

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F +  ++V+P  RR+AK +NF I+YGIS F L+  L I R EAA YI+ YF  +P I  +
Sbjct: 694 FHIPFDEVTPLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQYIESYFQTYPKIKGF 753

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++      ++ GYV T+F RR    E+ S     R+  ER A+N+PIQG+AADI + AMI
Sbjct: 754 LDGLVEEAKEKGYVSTLFHRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMI 813

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V+K L++  L ++++LQ+HDEL+ E  +EE+   S I+   M++A     +L V L+++
Sbjct: 814 RVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEAA----HLSVALEID 869

Query: 966 IKVSNNWQE 974
           +    NW E
Sbjct: 870 MHTGENWYE 878



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 162/291 (55%), Gaps = 11/291 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NAI GF N+L+K+L+  + +    +  V FD
Sbjct: 5   ILLIDGHSILNRAFYGLPDLTNA-EGLHTNAIYGFLNILFKILEEEKPD----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y  YK  R  +P  L  Q+P+++    A G+  I  +G+EADD++ T   
Sbjct: 60  LHAPTFRHKQYEAYKGTRKPMPMELREQIPVMKDVLSAMGVTMITKEGYEADDLLGTVAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180
            +E++G  VTI+S D+DL+QL S   C+     K  K  IE      V + + + P +++
Sbjct: 120 KSEEKGMDVTILSGDRDLLQLASSHICIRIPKTKGGKTTIEDYYENDVKEAYQLTPLQII 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+PG+G KTA  +L EYG +EN   +A  +K  K +   LE+ + A
Sbjct: 180 ELKALMGDTADNIPGLPGVGEKTATKILLEYGTVENAKAHAEELKPNKAKTAFLEHYDLA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            LS++L  +  D PI    E   + +   P    F K LEF   ++R   T
Sbjct: 240 VLSKELATICIDSPIEYDWEGAKIHNLYTPEAYEFFKELEFKNFLSRFEDT 290


>gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
 gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 205/530 (38%), Positives = 314/530 (59%), Gaps = 21/530 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S L ++ E+   +K  ++ K   +  HR  I+++  + D+ML SY++D  R+  D+ S+ 
Sbjct: 371 SDLIEWLEDAQTVKTVYDAKKTYVAAHRLDINIQNVQFDVMLASYIIDPSRAIDDVKSVV 430

Query: 510 QKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
             +  +Y +  +    K +K  IP D I    + EH    +  I     L+  +L     
Sbjct: 431 SLYGQNYVKDNVSIYGKGKKHHIPEDNI----LNEHVASITEAIASAKPLMEEQLKEYNQ 486

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
           + +   L+ P+  ++S+ME  GI  D + LK +  EI + L  L +NI++ +GE+FN++S
Sbjct: 487 VELLADLELPLAKILSEMEEIGIYTDVNDLKHMENEIQEKLDVLIKNIHEAAGEEFNINS 546

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG +LF  LK P   KTKTG + T    LEQ+  G++PII++ILE+RQLSK++STY 
Sbjct: 547 PKQLGVVLFETLKLPVIKKTKTG-YSTAVDVLEQLK-GEHPIIEHILEYRQLSKLQSTYV 604

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK- 744
           + L   I+K   R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT + 
Sbjct: 605 EGLQKVISK-DNRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAF--KPTSED 661

Query: 745 --LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             ++SADYSQIELR+LAHI +   L + F +  DIH   A ++F V    V   MRR AK
Sbjct: 662 SVILSADYSQIELRVLAHITQDESLKEAFIHGHDIHTATAMKVFNVEANDVDSLMRRQAK 721

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  GYVET+
Sbjct: 722 AVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETL 781

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+  ++ +++     K+LL
Sbjct: 782 LHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFNEKVKNTNYHAKLLL 841

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           Q+HDEL+FE+P+ E+   S+ +   ME A    ++L VPLKV+      W
Sbjct: 842 QVHDELIFELPKSEVEDFSEFVEEIMENA----LDLDVPLKVDSSYGPTW 887



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 203/395 (51%), Gaps = 44/395 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K++    KE   +HF V FD
Sbjct: 19  LVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKII----KEEQPNHFLVAFD 73

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T + 
Sbjct: 74  AGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELENYEADDIIGTLSK 133

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEKMV 180
            A++ G+   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P++++
Sbjct: 134 EADQSGYETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPSFIAEKYNGLEPKQII 192

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+PG+G KTA  LL ++ ++E +  N   +  KK +E ++   + A
Sbjct: 193 DMKGLMGDTSDNIPGVPGVGEKTAIKLLNQFNSVEGVYDNIDEVTAKKLKEKLINSKDDA 252

Query: 241 RLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            +S+ L  +  + PI + L+   LE  D N  + I   K LEF +L++ +    D DA N
Sbjct: 253 LMSKDLATINVESPIEVSLKDTKLENQDDNHEK-IELFKKLEFKQLLSDI----DEDANN 307

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                +   D +T  +   F +LS  T     E T      + + K 
Sbjct: 308 EE--------------VTDKTFDVETDFQHIDFKNLSHATIHFELEDT--NYLKDNILKF 351

Query: 359 SQYPINNDSYTKIVNTKDIQQ------WVQKLETI 387
             Y    D    ++N +DI+Q      W++  +T+
Sbjct: 352 GLY---TDDTHIVINAEDIKQHSDLIEWLEDAQTV 383


>gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
 gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
          Length = 885

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 194/537 (36%), Positives = 316/537 (58%), Gaps = 12/537 (2%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           K  +     S L +  E +    +GH++K    + H     +  +  D  + +Y+L+   
Sbjct: 351 KPAMVSAFFSGLGEIPEADSLQTVGHDLKNLTHIYHSQCSVIVNYTFDTYIGAYLLNPSD 410

Query: 501 SSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             +D+ ++A K+L  T    ++     K+ +  + +  +++    ++N  VI +L   L 
Sbjct: 411 QRYDLQTVAMKYLGDTIQSEEDFFGRGKTLVRAEDMDSARLAAFMVKNCEVIHRLEKPLA 470

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            K+  + +  +++ ++ P++ +++ ME  G ++D   L+++S E  K + +L   IY+L+
Sbjct: 471 EKIEADGMTGLFQNIELPLLKIMASMEELGFKVDIHQLEELSVEFEKKIETLTSEIYELA 530

Query: 618 GEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            E  FN++S KQLG ILF KLK P   KTKTG + T A+ L+Q+    +PII+ I+++R 
Sbjct: 531 EEDDFNINSTKQLGTILFDKLKLPVVKKTKTG-YSTNAEVLDQLVLF-HPIIQKIIDYRM 588

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           +SK+ STY   L   ++ +T ++++ ++   T TGRL+S +PNLQNIP+KT++G++IR+ 
Sbjct: 589 ISKLDSTYGKGLIKLVDPKTHKIYSTFNQTVTATGRLSSSDPNLQNIPVKTEMGREIRKV 648

Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           F+ S   + L+ ADYSQIELR+LAH++    L   F  + DIH   A+EIF V ++ VS 
Sbjct: 649 FVPSAGDRVLVDADYSQIELRVLAHLSGDENLIDTFVKNQDIHTRTASEIFNVPMDAVSR 708

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + R HAK INF +IYG   F L   L I R EA  YI  YF R+P + EY+E  K   ++
Sbjct: 709 EQRSHAKAINFGLIYGKQAFSLGKDLGITRGEAQSYIDLYFSRYPKVLEYMENIKAEAKE 768

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYV TI+GRR +  EINS    +    ER A+N PIQG+AADI + AMI V+  LE   
Sbjct: 769 KGYVTTIWGRRRYITEINSRNRMLVQAGERMALNTPIQGAAADIIKIAMIKVYDRLEREG 828

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L +K++LQ+HDEL+ +  + E  T  +++V  ME A    ++L+VPL V+    ++W
Sbjct: 829 LKSKLILQVHDELIIDTLKTEQETVMKLLVEEMENA----VDLKVPLTVDAHAGDSW 881



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/285 (36%), Positives = 159/285 (55%), Gaps = 11/285 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+DG+S +YR FY    +S    G+P NAI GF N+L K+ QN  K     + AV FD  
Sbjct: 7   LIDGNSLVYRMFYGVREMSNSK-GVPTNAIYGFVNVLVKI-QNEYK---PDYLAVAFDLS 61

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           A TFR++ Y DYK  R K+PE L  Q+ L++      GIP I  +G+EADDII T +   
Sbjct: 62  APTFRHKEYEDYKGGRDKMPEDLQVQMDLLKELLGKMGIPMITKEGYEADDIIGTLSKQG 121

Query: 129 EKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQ 183
           E       II+ DKD  QLV      LY   +       +D  ++++++G+ P +++ ++
Sbjct: 122 EARETKTQIITGDKDSFQLVDDYVNVLYTATRSGTQFATVDDAYIMERYGVTPRELIDVK 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD  DNIPG+ G+G KTA  L++EY N++ +  +   +K  K++E +    E+A  S
Sbjct: 182 ALMGDPSDNIPGVAGVGEKTAIKLIKEYHNIDTLYEHIDDLK-GKQKEKLEAGKESAFAS 240

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R L  +  DVP+ + LE L  +       I  L+ LEF  ++N++
Sbjct: 241 RFLGTICLDVPLDLSLEDLAFKPIFTEESIEMLRDLEFKSILNKI 285


>gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1]
 gi|737486|prf||1922368A DNA polymerase I
          Length = 921

 Score =  347 bits (889), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 189/498 (37%), Positives = 290/498 (58%), Gaps = 37/498 (7%)

Query: 481 ISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +S+RG      +D +L +Y+LD   ++  +  +A+++L               P D  + 
Sbjct: 451 LSVRGTVVEPGDDPLLYAYLLDPANTNMPV--VAKRYLD-----------REWPADAPTR 497

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + +  H +              P L+ +    +Y+ ++KP+  V+ +ME+ G+Q+D D L
Sbjct: 498 AAITGHLVREL-----------PPLLDDARRKMYDEMEKPLSGVLGRMEVRGVQVDSDFL 546

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTA 654
           + +S +    L  LE  I++ +GE+F++ SPKQL  +L+ KL+  S  KTK TGQ  T  
Sbjct: 547 QTLSIQAGVRLADLESQIHEYAGEEFHIRSPKQLETVLYDKLELASSKKTKLTGQRSTAV 606

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +    +PII  +LE+R+L K++ TY D +PN +N  T R+HT ++  +  TGRL+
Sbjct: 607 SALEPLRDA-HPIIPLVLEFRELDKLRGTYLDPIPNLVNPHTGRLHTTFAQTAVATGRLS 665

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           SL PNLQNIPI+++LG++IR+ FI+     LI+ADYSQIELR+LAHIA    + Q F   
Sbjct: 666 SLNPNLQNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEG 725

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA++ G++   V    RR AKT+NF ++YG+S  RL+  L IP +EAA +I+ 
Sbjct: 726 ADIHRRTAAQVLGLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAATFIEI 785

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PGI  YI  T +F R +GYVET++GRR +   ++S     R   ER A N PIQG
Sbjct: 786 YFATYPGIRRYINHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNMPIQG 845

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ +   L+   +  +MLLQ+HDEL+ E P ++    + +    ME     
Sbjct: 846 TAADIMKLAMVQLDPQLD--AIGARMLLQVHDELLIEAPLDKAEQVAALTKKVMENV--- 900

Query: 955 KINLRVPLKVNIKVSNNW 972
            + L+VPL V +    NW
Sbjct: 901 -VQLKVPLAVEVGTGPNW 917



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 166/330 (50%), Gaps = 39/330 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K + L L+DG +  +R+++A P L+    G   +AI GF  +L +L +    + I     
Sbjct: 10  KPDALVLIDGHALAFRSYFALPPLNNSK-GEMTDAIVGFMKLLLRLARQKSNQVI----- 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD P  T R+E Y  YK+ R + PE L  Q+  +R    A G P +E  G+EADD+IA
Sbjct: 64  VVFDPPVKTLRHEQYEGYKSGRAQTPEDLRGQINRIRALVDALGFPRLEEPGYEADDVIA 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           + T +AE +G+ V I+++D+D  QL+     +        I    V +K+G+   + V  
Sbjct: 124 SLTRMAEGKGYEVRIVTSDRDAYQLLDEHVKVIAN-DFSLIGPAQVEEKYGVTVRQWVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETA 240
           +ALTGD+ DNIPG  GIG KTAA LLQEYG LE +    +A  +K    R+ +L+  E  
Sbjct: 183 RALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEKVYEAAHAGTLKPDGTRKKLLDSEENV 242

Query: 241 RLSRKLVMLRTDVPITI-------PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           + S  L  + TD+P+ I       P   L+ ED         L  LE   L         
Sbjct: 243 KFSHDLSCMVTDLPLDIEFGVRRLPDNPLVTED--------LLTELELHSL--------- 285

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRD 323
                  P++L +N  E  G A +  ++R+
Sbjct: 286 ------RPMILGLNGPEQDGHAPDDLLERE 309


>gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 881

 Score =  346 bits (888), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 306/508 (60%), Gaps = 29/508 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           HR G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P D
Sbjct: 387 HRLGLHLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQVPED 446

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+    + E     S  +  L   L   L  ++   ++  ++ P+  V+++MEI GI ++
Sbjct: 447 KL----LFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLN 502

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG++LF KL  P   KTKTG + 
Sbjct: 503 AQTLKDMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG-YS 561

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-----PNHINKRTQRVHTFYSLA 706
           T+   L ++    +PI+++IL++R  +K+ STY   L     P+H      ++HT Y   
Sbjct: 562 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTYVVGLLKAQMPDH------KIHTRYLQT 614

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PN+QNIP + D G+ IR+AF+ S P  ++ S+DYSQIELR+L+HI+   
Sbjct: 615 LTQTGRLSSVDPNMQNIPAR-DEGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            + Q F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + LA  + I 
Sbjct: 674 NMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGIS 733

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  +I  YF ++P +H+Y+E      R++GYVET+F RR +  +I+S   ++R   E
Sbjct: 734 RKQAKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAE 793

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE P  E+    Q++
Sbjct: 794 RTAMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLV 853

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
              M+ A    ++L VPLKV       W
Sbjct: 854 PKIMDSA----VSLAVPLKVESHYGPTW 877



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 162/299 (54%), Gaps = 17/299 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAF+A    L R    DGL  NAI  F NML  +L++ + ++ 
Sbjct: 1   MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDAA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 61  L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+  TI++ D+DL QL +  T +  TVK     E    EHV +K G
Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL++YG++EN+  N   +K  K +EN+
Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIENLYANIDAMKTSKMKENL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVA 289
           +   + A LS++L  +  D P+TI L  +     NGP   +L  F   +    L+ ++ 
Sbjct: 237 INDKDKAYLSKQLATIDRDAPVTIDLADV---KYNGPDLAKLRDFYTKMNMNSLLKKIG 292


>gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
 gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
          Length = 886

 Score =  346 bits (888), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 201/527 (38%), Positives = 312/527 (59%), Gaps = 18/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK   EN    K   + K   + L R  +++ G + D++L SY+L++  +S+D+  +A +
Sbjct: 367 LKGLLENADIAKQVFDAKRTFVALQRLAVTLTGVDCDLLLGSYLLNTYDNSNDLGRLAME 426

Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +   T +++  K  K++IP D   D     H    +  I QL   +   L   +   
Sbjct: 427 HGYHQVATDEDVYGKGAKAAIPDD---DDVFFSHLARKARAIEQLRPQIFKDLADNEQTD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y  ++ PM  V+++ME+ GI ++   L+ + ++ ++ L  +E+ IY+ +GE+FN+ SPK
Sbjct: 484 LYRDIELPMAFVLARMEVAGITVEASELEAMGSKFTEQLAEIEQTIYNEAGEEFNIGSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF K+  P   KTKTG + T    LE++   + PI +NIL++R+++KI+STY + 
Sbjct: 544 QLGHILFEKMGLPVIKKTKTG-YSTAVGVLEKL-AAEAPIAENILKYRKIAKIQSTYVEG 601

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   I+   Q+VHT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ S P  ++ 
Sbjct: 602 LLKVIHPDDQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRNEEGRAIRKAFVPSHPDWEIF 661

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAH++    + + F    DIH   A  IF +   E+V+P +RR AK +N
Sbjct: 662 SSDYSQIELRVLAHMSHDKQMQEAFREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVN 721

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS F L+  + I R +A  +I  YF  +PG+  Y E+      + GYVETI  R
Sbjct: 722 FGIVYGISDFGLSQNIGISRKQAKAFIDTYFEEYPGVKAYTERMVQQAHELGYVETIAHR 781

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +INS   + R+  ER A+N PIQGSAADI + AMI + ++L+D  +   MLLQ+H
Sbjct: 782 RRYLPDINSRNFNQRSFAERTAMNTPIQGSAADIIKIAMIRMEQALKD--MQATMLLQVH 839

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DEL+FE P  EI T ++++   M+ A    I L +PLKV       W
Sbjct: 840 DELIFEAPASEIDTLAKLVPSVMDSA----IELEIPLKVESHYGPTW 882



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 169/318 (53%), Gaps = 15/318 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           E  L L+DG+S  ++AF+A      K    +GL  NAI GF  ML  +L+  +     +H
Sbjct: 3   EKRLLLIDGNSVTFKAFFALYTALGKFTNSEGLHTNAIYGFNTMLETMLKVVQP----TH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR ++Y +YK  R K    L  Q P V+    A GI   E+  +EADDI
Sbjct: 59  ALVAFDAGKTTFRTKMYDNYKGGRAKTAPELSEQFPYVKELLAARGIQTYELANYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIP 175
           I T    AE++GF  TI++ D+DL QL    T +    K+   +IEH     V +K G+ 
Sbjct: 119 IGTLAKQAEEQGFTTTIVTGDRDLTQLADDHTTV-SISKKGVSEIEHYTPAYVKEKMGVT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ ++ L GD+ DN PG+ G+G K A  L+  YG+++ I  + + I  KK +E+++ 
Sbjct: 178 PAQIIDIKGLQGDNSDNYPGVTGVGPKRAVELVSTYGSIDGIYDHLADITAKKLKEHLIA 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             + A L+++L  ++ D P+   +  L+ +  +  +L+ F + + F + +++++   +  
Sbjct: 238 DHDQALLAKQLATIKRDAPVEKTVSELVYKGDDYDQLVPFYQKMNFNQFLSKMSIDGEAP 297

Query: 296 AA--NIEPVVLDINTTEN 311
            A   +E V   + T +N
Sbjct: 298 TATPGLEEVTYTVLTADN 315


>gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT]
 gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT]
          Length = 878

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 203/556 (36%), Positives = 330/556 (59%), Gaps = 41/556 (7%)

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           E +F+ +S +  +D  G      +    LK  FENE   K+ H+ K   +VL ++ I+ +
Sbjct: 356 EEVFV-ISANEIKDKDGA-----KYFEILKNLFENEKIKKVCHDSKKVYVVLKKHNIAAK 409

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK---ISDSQVQ- 539
               D  + +Y+L   +S + +  + ++ L  + K+       +I I++   I D   + 
Sbjct: 410 NIAFDTKIAAYLLQPSKSDYMLKDLIEEMLLLSLKD-----DDNIKINETYYIKDVYEKL 464

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  I+ SN+              E+LL+  E    P+I+V++ ME  G ++D++ L ++ 
Sbjct: 465 EKDIKKSNM--------------EELLYTVEL---PLIEVLASMECEGFRVDENRLTEIG 507

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  K + +LE+ I++L+ E+FN+ SPKQLG ILF KL  P   KTKTG + T A+ LE+
Sbjct: 508 EKFKKEIETLEKEIHELADEEFNIKSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 566

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII+ I+E+RQ++K+ STY + L N I++   ++H+ ++   T TGRL+S EPN
Sbjct: 567 LK-DSHPIIEKIIEYRQITKLDSTYVEGLKNVIDEDA-KIHSSFNQTVTTTGRLSSTEPN 624

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ F+    + +I SADYSQIELRIL+HIA    L   F++  DIH
Sbjct: 625 LQNIPIKHEMGREIRKVFVPNNDESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDIH 684

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            + A+E+F V I++V+P MR +AK +NF I+YGI  F L+  + + R EA +YI  YF R
Sbjct: 685 TITASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFSR 744

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + +YI++  +    +G+V TI  R+ +  EI S    +R   ER A+N PIQGSAAD
Sbjct: 745 YPNVKKYIDEIISKAEVDGFVTTILNRKRYIPEIQSRNKIVRGFGERLAMNTPIQGSAAD 804

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ V+  L++  L + ++LQ+HDEL+  V ++E+    +++V  ME      + L
Sbjct: 805 IIKLAMVEVYNELKNRNLKSTLILQVHDELILNVYKDELEEVKEMVVDKMENV----MKL 860

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+ ++ V   W E
Sbjct: 861 LVPLEADVNVGETWYE 876



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 187/327 (57%), Gaps = 25/327 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++DG S +YRAF+A P L+ K +G+  NAI GF  ML K+     KE I   
Sbjct: 1   MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKM-----KEEIKPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR++ Y +YKA R K+P+ L  Q P+V+       I   EI+GFEADD
Sbjct: 54  YIVTTFDKKAPTFRHKEYEEYKAGRAKMPDELNEQFPIVKDILNKLAINIFEIEGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ D+D +QL +    +    K    +E  D   +I+++G+ 
Sbjct: 114 LIGTLSKFAEEKGIEVYIVTGDRDALQLATDNVRVVINKKGMSEKEIYDKNKMIEEYGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++ L GD  DNIPG+PGIG KTA  L++EYG++EN+L N   I  KK ++N+++
Sbjct: 174 PTEFIDVKGLMGDKSDNIPGVPGIGNKTALKLIKEYGSIENVLENVENISGKKMKQNLID 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRVATTY 292
           Y E A LS+KL  +  DVPI I L+ +  +   D  G RL+   ++L F  L++ +    
Sbjct: 234 YREQAILSKKLATICKDVPIEINLDEIKSKEDYDIQGVRLL--FQSLGFKSLLDNIGDNE 291

Query: 293 DCDA--------ANIEPVVLDINTTEN 311
             D         ++I     +INT EN
Sbjct: 292 GLDKEDEAEVKESDINIKSTNINTIEN 318


>gi|332638560|ref|ZP_08417423.1| DNA polymerase I [Weissella cibaria KACC 11862]
          Length = 904

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 201/513 (39%), Positives = 311/513 (60%), Gaps = 19/513 (3%)

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-K 522
           N K   + L R G+++     D++L++Y+LD+  +++D+ ++A +   Y   T +E+  K
Sbjct: 399 NAKGTIVALRRLGLTLPNVAFDLLLVAYLLDANDNNNDMGALAHENGYYAVRTDEEVYGK 458

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K +IP    +D  + EH    +  I  L   L  KL   +   +Y+ ++ P+  V++ 
Sbjct: 459 GAKFAIPE---ADEDLFEHLGRKAMAIQYLKDPLMAKLTEHEQTQLYDDIELPLTYVLAD 515

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME TGI +D + L ++ +++++ L  LE+ IY  +G +FN+ SPKQLG +LF ++ +   
Sbjct: 516 MEATGITVDANTLLEMRSKLTERLAELEQTIYQQAGHEFNVQSPKQLGVVLFEEMGYTPI 575

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T+ + LEQ+  GD P++ +IL +RQ++KI+STY + L   I+    +VHT 
Sbjct: 576 KKTKTG-YSTSVEVLEQM--GDVPLVASILAYRQIAKIQSTYVEGLLRVIHGSDSKVHTR 632

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAH 760
           Y    T TGRL+S++PNLQNIP++ + G++IR+AF+ P  K  +++SADYSQIELR+LAH
Sbjct: 633 YLQTLTQTGRLSSVDPNLQNIPVRIEEGRRIRKAFV-PREKGWRILSADYSQIELRVLAH 691

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I     L + F N  DIH   A  IFG+   E V   +RR AK +NF I+YGIS F LA 
Sbjct: 692 ITGDKHLQEAFINGEDIHAATARRIFGIGPDETVDGNIRRQAKAVNFGIVYGISDFGLAK 751

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            + + R +A   I  YF ++PG+  + E+     R+ GYVETI  RR +  +I +   ++
Sbjct: 752 NIGVSRKQAKQIIDTYFEQYPGVKTWSEEIIAAAREQGYVETIAHRRRYLPDIKAKNFNL 811

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER A+N+PIQGSAADI + AMI++ K+L D  L  KMLLQ+HDEL+FE PE E+  
Sbjct: 812 RSFAERTAMNSPIQGSAADIIKIAMINMEKALRDAGLQAKMLLQVHDELIFEAPESELPI 871

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +++   M+ A    + L VPL V       W
Sbjct: 872 LHELVPRVMDSA----MQLDVPLIVASHEGETW 900



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 161/294 (54%), Gaps = 18/294 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR-----KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L L+DG+S  +RAF+A  L+++      H+GL  NA+ GF N+L  ++ +  K  +A   
Sbjct: 6   LLLIDGNSLAFRAFFA--LINQVDRFVNHEGLHTNALVGFNNLLDGIV-DPFKPDLA--- 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V +D    TFR   + DYK NR K P+ L+ Q   +R   +  GI + E+ G+EADDII
Sbjct: 60  LVAWDAGKTTFRTGKFDDYKGNRDKTPQELVEQFEPLRKMVELHGIKSYELPGYEADDII 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIP 175
            T   + E  G+AVTI++ D+D+ QLV+    ++ T K+   +I+H           G+ 
Sbjct: 120 GTTARMGEAAGYAVTIVTGDRDMTQLVTDDVSVWVT-KKGISEIDHYTPAMVAEVYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P ++V ++ L GD+ DN PG+ GIG KTA  L++EY  +  +      +K  K++E ++ 
Sbjct: 179 PAQIVEVKGLQGDTSDNYPGVAGIGPKTAIKLMKEYHTIPEMYERIDEMKTSKQKEKLIA 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
             E A LSR L  +RT+ P+   L  L     +   +I F + L+F   + ++A
Sbjct: 239 GKEDALLSRDLATIRTNAPVDYDLSSLTYNGPDYEAIIPFYQHLDFKAQLVKLA 292


>gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 866

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 311/533 (58%), Gaps = 39/533 (7%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           L+     FE E   KI H  K     LH  G+      D+ L +Y+L    S +D+AS+A
Sbjct: 359 LACFSSLFEKEDIQKIVHEYK---PFLH-CGMGFTPCFDVSLAAYLLAPAASQYDMASLA 414

Query: 510 QKWL------SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
             +L         R+  L +   ++ ++KI                   + +L+ +L  +
Sbjct: 415 ATYLPSVNAAEAAREGALGAAWCAVLLEKI-------------------YPVLKERLEEQ 455

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           +LL +YE ++ P+++V++ ME  GI +D+  L + S EIS  +  L   IYDL+  +FN+
Sbjct: 456 QLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKGEFNI 515

Query: 624 SSPKQLGDILFTKLKF--PSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +SPKQL  +LF +L    P G K TKTG + T A+ LE +   D+PI++ IL +R  +K+
Sbjct: 516 NSPKQLSAVLFERLDLQPPMGTKKTKTG-YSTNAEVLEAMRF-DHPILEKILSYRFWTKL 573

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-IS 739
           +STY DS+   I+ RT+R+HT ++   T TGRL+S EPNLQNIP++T+ G++IR  F  S
Sbjct: 574 QSTYLDSMEGLISPRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPS 633

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L+SADYSQIELRILAH+++     + F +  DIH   A+E+FGV +E V+  +RR
Sbjct: 634 DGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRR 693

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF I+YGIS + L+  L I R EAADYI  YF +  GI  +I+       ++G+V
Sbjct: 694 KAKAVNFGIVYGISDYGLSKDLHISRQEAADYIASYFAKCSGIKRFIDGVVEKAHKDGFV 753

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            TIFGRR     I S   + R + ER A+N PIQGSAADI + AMI  H++L++    ++
Sbjct: 754 TTIFGRRRDLPAIKSSNYNQRTLAERMAMNTPIQGSAADIIKLAMIKTHRALQEGGFKSR 813

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +LLQ+HDELV E+ + E    ++++  +ME      + L VPL V+I    NW
Sbjct: 814 ILLQVHDELVLEIMQNEKEQVAELVRDAMENI----VQLSVPLSVDIHTGENW 862



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/284 (38%), Positives = 157/284 (55%), Gaps = 18/284 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDGSS +YRAFYA PLL +  DG   NA+ GF NML KLL     E    + AV FD  
Sbjct: 7   LVDGSSLLYRAFYALPLL-QTADGAYTNAVYGFANMLQKLLN----EYAPDYLAVAFDKG 61

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFRNE++  YK  R   P  L  Q+P++     A G+P IE  G+EADDI+ T    A
Sbjct: 62  KKTFRNEMFAAYKGTRKPTPPELSSQIPMLHEFLAALGVPLIEEAGYEADDILGTLAVKA 121

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--------EEKIDIEHVIKKWGIPPEKMV 180
            +E   V +++ D+D +QLV     +  T K        +EK+ +E    ++G PP+ ++
Sbjct: 122 AREDVDVLVVTGDRDALQLVRENIRVLFTRKGMTDLLLYDEKLFLE----EYGFPPKGLI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+PGIG KTA  LL + G+LE +    + I  KK +EN+    E A
Sbjct: 178 DMKGLMGDASDNIPGVPGIGPKTAKKLLIDCGSLEGVYERLAEISGKKLKENLASNKEKA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            LS+ L  +R D+P+    +  +++   G  L +F +  E   L
Sbjct: 238 FLSKDLATIRCDMPLAFAPDSYVMKP-RGDELQAFFQRYEMKSL 280


>gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
 gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
          Length = 881

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 215/535 (40%), Positives = 314/535 (58%), Gaps = 31/535 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511
            K+F EN   LK+ ++ K  K++L R GI + R   D  L  Y+L S   +++I +IA  
Sbjct: 363 FKEFLENTA-LKV-YDFKRSKVLLSRLGIELSRPAFDSRLAKYLL-STVDNNEIVTIAGL 419

Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +    L+       K  K ++P          E AI  S++  ++ +L+  +  +  LL 
Sbjct: 420 YGKTKLAEDEAVYGKGAKRALP----------EKAILLSHLARKVTVLIETEKPMTDLLR 469

Query: 568 VYERL------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            +++L      ++P+  V+++MEI GI+++++ L+ + AE  + L  L + IYDL+GE+F
Sbjct: 470 QHDQLNLLYEMEQPLAFVLAKMEIAGIKVERETLQTMQAENERILTRLTQEIYDLAGEEF 529

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++SPKQLG ILF KL  P+    KT    +TA D+ +      PI++ IL++RQ++KI+
Sbjct: 530 NINSPKQLGGILFEKLGLPTSFTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQ 589

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP- 740
           STY   L + I     ++HT Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF+   
Sbjct: 590 STYVMGLQDWI-LADGKIHTRYLQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFVPEW 648

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRR 799
               L+S+DYSQIELR+LAHI+    L + F +  DIH   A  +F +   E V+P  RR
Sbjct: 649 EDSVLLSSDYSQIELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRR 708

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           +AK +NF ++YGIS F LA  L I R EA  YI  YF R+PGI  Y+E      R  GYV
Sbjct: 709 NAKAVNFGVVYGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYV 768

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+F RR    +INS   ++R   ER AIN+PIQGSAADI + AMI + ++L D    T+
Sbjct: 769 ETLFHRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLGQALIDGNFKTR 828

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           MLLQ+HDE+V EVPE E+T    ++   ME A    I L VPLK +      W E
Sbjct: 829 MLLQVHDEIVLEVPENELTAIKALVKDIMESA----IELSVPLKADESAGKTWYE 879



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/296 (38%), Positives = 160/296 (54%), Gaps = 19/296 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ +N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  L++  + 
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLIERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYK  R K PE    QLP +R      GI   ++  
Sbjct: 57  ---PTHILVAFDAGKTTFRTEMYADYKGGRAKTPEEFREQLPFIREMLDKLGIRYYDLDQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AE     + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAENTAVPYDVTIVSGDKDLIQLADDNTIVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI P + + L+AL GDS DNIPG+  IG KT   LL +YG+LE I  N  ++KQ K
Sbjct: 174 MEKMGITPTQFIDLKALMGDSSDNIPGVTKIGEKTGLKLLLKYGSLEGIYDNIDQMKQSK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +EN++   + A LSR L  + T  PI I LE ++ +  N  +L  F   + F + 
Sbjct: 234 MKENLINDKDIAFLSRTLATIDTQAPIEIGLEDILYQGPNIKQLSRFYDEMGFKQF 289


>gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
 gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
          Length = 876

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR GI ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAIDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   +R A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAKRTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +++ T  K  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 311/533 (58%), Gaps = 39/533 (7%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           L+     FE E   KI H  K     LH  G+      D+ L +Y+L    S +D+AS+A
Sbjct: 360 LACFSSLFEKEDIQKIVHEYK---PFLH-CGMGFTPCFDVSLAAYLLAPAASQYDMASLA 415

Query: 510 QKWL------SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
             +L         R+  L +   ++ ++KI                   + +L+ +L  +
Sbjct: 416 ATYLPSVNAAEAAREGALGAAWCAVLLEKI-------------------YPVLKERLEEQ 456

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           +LL +YE ++ P+++V++ ME  GI +D+  L + S EIS  +  L   IYDL+  +FN+
Sbjct: 457 QLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKGEFNI 516

Query: 624 SSPKQLGDILFTKLKF--PSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +SPKQL  +LF +L    P G K TKTG + T A+ LE +   D+PI++ IL +R  +K+
Sbjct: 517 NSPKQLSAVLFERLDLQPPMGTKKTKTG-YSTNAEVLEAMRF-DHPILEKILSYRFWTKL 574

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-IS 739
           +STY DS+   I+ RT+R+HT ++   T TGRL+S EPNLQNIP++T+ G++IR  F  S
Sbjct: 575 QSTYLDSMEGLISPRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPS 634

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L+SADYSQIELRILAH+++     + F +  DIH   A+E+FGV +E V+  +RR
Sbjct: 635 DGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRR 694

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF I+YGIS + L+  L I R EAADYI  YF +  GI  +I+       ++G+V
Sbjct: 695 KAKAVNFGIVYGISDYGLSKDLHISRQEAADYIASYFAKCSGIKRFIDGVVEKAHKDGFV 754

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            TIFGRR     I S   + R + ER A+N PIQGSAADI + AMI  H++L++    ++
Sbjct: 755 TTIFGRRRDLPAIKSSNYNQRTLAERMAMNTPIQGSAADIIKLAMIKTHRALQEGGFKSR 814

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +LLQ+HDELV E+ + E    ++++  +ME      + L VPL V+I    NW
Sbjct: 815 ILLQVHDELVLEIMQNEKEQVAELVRDAMENI----VQLSVPLSVDIHTGENW 863



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/284 (38%), Positives = 157/284 (55%), Gaps = 18/284 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDGSS +YRAFYA PLL +  DG   NA+ GF NML KLL     E    + AV FD  
Sbjct: 8   LVDGSSLLYRAFYALPLL-QTADGAYTNAVYGFANMLQKLLN----EYAPDYLAVAFDKG 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFRNE++  YK  R   P  L  Q+P++     A G+P IE  G+EADDI+ T    A
Sbjct: 63  KKTFRNEMFAAYKGTRKPTPPELSSQIPMLHEFLAALGVPLIEEAGYEADDILGTLAVKA 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--------EEKIDIEHVIKKWGIPPEKMV 180
            +E   V +++ D+D +QLV     +  T K        +EK+ +E    ++G PP+ ++
Sbjct: 123 AREDVDVLVVTGDRDALQLVRENIRVLFTRKGMTDLLLYDEKLFLE----EYGFPPKGLI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+PGIG KTA  LL + G+LE +    + I  KK +EN+    E A
Sbjct: 179 DMKGLMGDASDNIPGVPGIGPKTAKKLLIDCGSLEGVYERLAEISGKKLKENLASNKEKA 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            LS+ L  +R D+P+    +  +++   G  L +F +  E   L
Sbjct: 239 FLSKDLATIRCDMPLAFAPDSYVMKP-RGDELQAFFQRYEMKSL 281


>gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 883

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 195/504 (38%), Positives = 314/504 (62%), Gaps = 14/504 (2%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDK 532
           L+R  I+++  + D++L+SY+L++  +S+D+ ++A+   + +    E +  + +   ID 
Sbjct: 387 LYRSSITLQNVDFDMLLVSYLLNTTNNSNDVGTVAKLHGFANIKTDEEVYGKGAKKKIDP 446

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
               +  +H +  +  I QL   +   L       +Y  ++  +  V+++MEI GI+++ 
Sbjct: 447 -EVPEFFDHIVHKAKAIDQLHNDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNP 505

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L+Q+ ++  + L  +E+ I+  +GE+FN+ SPKQLG ILF K++ P   KTKTG + T
Sbjct: 506 ETLEQMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGHILFEKMRLPILKKTKTG-YST 564

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   LE++   D PI++N+L +RQ+SK++STY D L   I++   +VHT Y    T TGR
Sbjct: 565 SVDVLEKL-APDAPIVQNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGR 623

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIP++++ G+ IR+AFI S    ++ S+DYSQIELR+LA I     + + F
Sbjct: 624 LSSVDPNLQNIPVRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAF 683

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               DIH   A  IFG+ + + V+P++RR AK +NF I+YGIS + LA    I R +A  
Sbjct: 684 REGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQ 743

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  +PG+ +Y E    F + +GYVETI  RR +  +I+S   ++R+  ER A+N 
Sbjct: 744 FIQRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNT 803

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI++ ++L+   L T+MLLQ+HDEL+FEVP +E+ T  ++I   M+ 
Sbjct: 804 PIQGSAADIIKIAMINMDEALK--PLKTRMLLQVHDELIFEVPNDEMETVEKLIPKVMDS 861

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    I L +PLKV       W E
Sbjct: 862 A----IRLNIPLKVESHWGKTWYE 881



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 157/291 (53%), Gaps = 12/291 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  ++AFYA    L R     GL  +AI GF  ML K+LQ  +   I     V
Sbjct: 5   LLLIDGNSIAFKAFYALYNSLERFTNSSGLHTSAIYGFNRMLDKVLQEEKPTDIL----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR +++ DYKANR K P  L  Q P +R   +A GI + E+  +EADDII T
Sbjct: 61  AFDAGKTTFRTKMFSDYKANRAKTPTELSEQFPFIRELVKARGISSYELPDYEADDIIGT 120

Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178
               AE +G + V I++ D+DL QL S  T +      T   EK   +HV +K G+ P +
Sbjct: 121 LAKEAEDKGDYQVVILTGDRDLTQLTSDKTTVQISKKGTTDLEKYTPQHVEEKLGVKPSQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++  + L GD+ DN PG+  +G KTA  L+Q++G++ENI  N   +  K  +E++L   +
Sbjct: 181 IIDFKGLKGDNSDNYPGVTKVGDKTAMKLVQQFGSIENIYSNIDHVSGKMLKEHLLNDKD 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            A   + L  ++ D PI + L+ L  E  N  +L  F + + F   ++ + 
Sbjct: 241 KAERGKVLATIKRDAPIKVSLDDLKYEGDNLDKLTDFYERMGFKSFLSNLG 291


>gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
 gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
          Length = 877

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 311/528 (58%), Gaps = 21/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L ++ EN+H  KI  + K   +  HR  I+++  + D+ML SY+++  R+  D+ S+   
Sbjct: 359 LIEWLENDHNNKIVFDAKKTYVAAHRLEINLQHIDFDVMLASYIINPSRTIEDVQSVVSY 418

Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  ++ + +I    K +K  +P+D +    ++ H       I     L+   L     + 
Sbjct: 419 YNQNFVKSDIAVYGKGKKRQVPLDDV----LEVHIAAIMQAIYNCKPLMSDILSDHNQMD 474

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   L+ P+  +++ ME TGI  D + LK++  E+ + L +L   IY+ +GE FN++SPK
Sbjct: 475 LLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAGESFNINSPK 534

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF  LK P   KTKTG + T    LEQ+  G +PII  ILE+RQLSK++STY + 
Sbjct: 535 QLGIVLFETLKLPIIKKTKTG-YSTAVDVLEQLQ-GKHPIIDYILEYRQLSKLQSTYVEG 592

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   I+   QR+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT     
Sbjct: 593 LQKVISD-DQRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSDDYV 649

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           ++SADYSQIELR+LAH+ +   L + F +  DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 650 ILSADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAMKVFGVEKDQVNDLMRRQAKAV 709

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       + NGYVET+  
Sbjct: 710 NFGIVYGISDYGLSQNLGITRKKAKAFIDDYLASFPGVKQYMTDIVKDAKANGYVETLLH 769

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+   K++ +     K+LLQ+
Sbjct: 770 RRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFDKNVRETNYHAKLLLQV 829

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FEVP+ E+   S+ +   M+ A    + L VPL V+      W
Sbjct: 830 HDELIFEVPKSEVQDFSEFVEEIMDNA----LTLAVPLLVDSSYGATW 873



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/292 (36%), Positives = 165/292 (56%), Gaps = 13/292 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RAFYA PLLS K  G+  NAI GF  +L K+L    KE   +HF V FD
Sbjct: 4   LVLIDGNSLSFRAFYALPLLSNKA-GIHTNAIYGFAMLLEKIL----KEEQPNHFLVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E Y +YK  R   P  L  Q P +R    A+ I   E++ +EADDII T + 
Sbjct: 59  AGKTTFRHEKYSEYKGGRQSTPPELSEQFPYIRQLLDAYHIKYYELENYEADDIIGTLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEKMV 180
            AE  G    II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P++++
Sbjct: 119 QAEASGLETIIITGDRDLTQLATDHVTIYYT-KKGVTDVDHYTPEFIAEKYNGLLPKQII 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+ G+G KTA  LL ++ ++E +  +   +  KK +EN+      A
Sbjct: 178 DMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFHSVEGVYNHLDEVSGKKLKENLENSKADA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPR-LISFLKALEFTKLINRVATT 291
            +S+ L  +  D PI + L+  I+ D N  +  I   + LEF +L+N + ++
Sbjct: 238 FMSKDLATINCDSPIKVNLKDTIMGDLNDNKDKIELFQKLEFKQLLNDIDSS 289


>gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 883

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 195/504 (38%), Positives = 314/504 (62%), Gaps = 14/504 (2%)

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDK 532
           L+R  I+++  + D++L+SY+L++  +S+D+ ++A+   + +    E +  + +   ID 
Sbjct: 387 LYRSSITLQNVDFDMLLVSYLLNTTNNSNDVGTVAKLHGFANIKTDEEVYGKGAKKKIDP 446

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
               +  +H +  +  I QL   +   L       +Y  ++  +  V+++MEI GI+++ 
Sbjct: 447 -EVPEFFDHIVHKAKAIDQLHNDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNP 505

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L+Q+ ++  + L  +E+ I+  +GE+FN+ SPKQLG ILF K++ P   KTKTG + T
Sbjct: 506 ETLEQMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGHILFEKMRLPILKKTKTG-YST 564

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +   LE++   D PI++N+L +RQ+SK++STY D L   I++   +VHT Y    T TGR
Sbjct: 565 SVDVLEKL-APDAPIVQNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGR 623

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIP++++ G+ IR+AFI S    ++ S+DYSQIELR+LA I     + + F
Sbjct: 624 LSSVDPNLQNIPVRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAF 683

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               DIH   A  IFG+ + + V+P++RR AK +NF I+YGIS + LA    I R +A  
Sbjct: 684 REGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQ 743

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  +PG+ +Y E    F + +GYVETI  RR +  +I+S   ++R+  ER A+N 
Sbjct: 744 FIQRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNT 803

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI++ ++L+   L T+MLLQ+HDEL+FEVP +E+ T  ++I   M+ 
Sbjct: 804 PIQGSAADIIKIAMINMDEALK--PLKTRMLLQVHDELIFEVPNDEMETVEKLIPKVMDS 861

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    I L +PLKV       W E
Sbjct: 862 A----IRLNIPLKVESHWGKTWYE 881



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 157/291 (53%), Gaps = 12/291 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  ++AFYA    L R     GL  +AI GF  ML K+LQ  +   I     V
Sbjct: 5   LLLIDGNSIAFKAFYALYNSLERFTNSSGLHTSAIYGFNRMLDKVLQEEKPTDIL----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR +++ DYK NR K P  L  Q P +R   +A GI + E+  +EADDII T
Sbjct: 61  AFDAGKTTFRTKMFSDYKGNRAKTPTELSEQFPFIRELVKARGISSYELPDYEADDIIGT 120

Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178
               AE +G + V I++ D+DL QL S  T +      T   EK   +HV +K G+ P +
Sbjct: 121 LAKEAEDKGDYQVVILTGDRDLTQLTSDKTTVQISKKGTTDLEKYTPQHVEEKLGVKPSQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DN PG+  +G KTA  L+Q++G++ENI  N   +  K  +E++L   +
Sbjct: 181 IIDIKGLKGDNSDNYPGVTKVGDKTAMKLVQQFGSIENIYSNIDHVSGKMLKEHLLNDKD 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            A   + L  ++ D PI + L+ L  E  N  +L  F + + F   ++ + 
Sbjct: 241 KAERGKVLATIKRDAPIKVSLDDLKYEGDNLDKLTDFYERMGFKSFLSNLG 291


>gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
 gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
          Length = 867

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 205/551 (37%), Positives = 317/551 (57%), Gaps = 43/551 (7%)

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE- 487
           ID    +S+DS       +E L  LK   E+++  K+ H+ K     L++  I ++GF+ 
Sbjct: 349 IDFKDISSKDS-------EEALKVLKNLMEDDNVKKVIHDGKNFVTFLNKNQIEIKGFDF 401

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + +Y++DS +S ++I  +   +                    I D+   E +  N  
Sbjct: 402 DTAIAAYLIDSSKSKYEILELVNHY--------------------IGDNPNSEGS--NIK 439

Query: 548 VILQLWL-----LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            IL  +L      L+  L  E +  +Y  ++ P+I V+S ME  G  I+Q +L ++  + 
Sbjct: 440 AILCSYLPMVYEKLKENLHKENMDQLYYEVEHPLIYVLSSMESIGFNINQGMLDELQTKF 499

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
            K +   ++ IY+L+ E+FN+SSPKQLG ILF KL  P   KTKTG + T  + LE++  
Sbjct: 500 KKEIDKTQKEIYELADEEFNISSPKQLGKILFEKLDLPVIKKTKTG-YSTNQEVLEKL-M 557

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
             + II  I+ +RQ++KI STY + L N +++   R+H+ ++   T TGRL+S EPNLQN
Sbjct: 558 NKHDIIPKIMYYRQITKINSTYVEGLKNVVDE-DGRIHSNFNQTVTTTGRLSSTEPNLQN 616

Query: 723 IPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           IPIK ++G++IR+ FI    T  L+S DYSQIELR+LAHIA    +   FE+  DIH   
Sbjct: 617 IPIKYEMGREIRKVFIPMEETDILVSCDYSQIELRVLAHIAGDENMIDAFEHHSDIHTKT 676

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+E+F V I +V+  MR  AK +NF I+YGIS F LA  L+I + EA +Y+  Y  R+P 
Sbjct: 677 ASEVFKVPIGEVTSLMRSRAKAVNFGIVYGISAFSLAEDLKITKKEAEEYMSIYLERYPK 736

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I EY+E   +  ++ GYV TI  RR    EI S    ++ + +R A+NAPIQGSAADI +
Sbjct: 737 IKEYLENVVDEAKEKGYVLTILNRRRFIPEIKSSNKIVKALGDRLAMNAPIQGSAADIIK 796

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AM++V+  L + +L ++++LQ+HDEL+  V ++E      ++ + ME A    I L+V 
Sbjct: 797 LAMVNVYNKLNEKELKSELILQVHDELILNVKKDEFEEVKNLVAYEMENA----IKLKVA 852

Query: 962 LKVNIKVSNNW 972
           L V++   + W
Sbjct: 853 LDVDVNFGDTW 863



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 153/260 (58%), Gaps = 9/260 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D +S + RAFYA P L+   DG+  NAI GF NML K+      +SI +     FD
Sbjct: 4   LLILDSNSLMNRAFYALPPLTN-SDGINTNAIYGFINMLLKMKDEINPDSIIA----TFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y +YKA R K+P  L  Q P+++   +  GI   E++GFEADD+I T + 
Sbjct: 59  LKAPTFRHKEYSEYKAGRNKMPPELAEQFPIIKELFKLMGIKIFEVEGFEADDLIGTVSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCL 182
            AE     V +++ D+D +QL S  T +  T   V E  + D E  + ++ + PE+ + +
Sbjct: 119 FAEDNNAEVFVVTGDRDALQLASEKTKIIITKKGVSETAVYDKESFMDEFEVTPEQFIDV 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+PG+G KTA  L++EYG++E ++ N  +I  KK +EN+    E A  
Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEKVIKNIDKISGKKLKENLENNVEQAIF 238

Query: 243 SRKLVMLRTDVPITIPLEHL 262
           S+KL  +  +VPI + LE +
Sbjct: 239 SKKLATIMREVPIELNLEDI 258


>gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
 gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
          Length = 862

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/513 (37%), Positives = 308/513 (60%), Gaps = 17/513 (3%)

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           + +  ++IK +  +L + GI +   +D+M+ + ++DS  +S        +W    R E +
Sbjct: 365 YRRTTYDIKRNAHLLEKNGIYLNFSDDVMIYTSLVDSTITSFKKLKEKSEWQETIRYEEV 424

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
             ++     + I  +Q    A    N+I Q+     PKL    L+ +Y  ++ P++ ++ 
Sbjct: 425 YKKE-----ELIEKNQAAYCASVLRNLI-QVDQEYYPKLKEMNLISLYRDVELPLVTILK 478

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI+ ++ +L  ++      +  LE+ IY + G +FNL+SPKQL  +L+ +L+   
Sbjct: 479 DMEQKGIRCEEKVLDHIAEGTLAKIQELEKAIYKVVGHEFNLNSPKQLAVVLYDELQILK 538

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           G K  T      A +LE+I  G   ++ +IL +R+ SK+ STYA+ L  +I +   ++HT
Sbjct: 539 GKKRSTA-----AGELEKIQ-GLYTVVDDILAYRKYSKLYSTYAEGLKKYI-QADGKIHT 591

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            Y+ A+T TGRL+S EPNLQNI ++ + G++IR+AF+      L+S+DY Q+ELRILAH+
Sbjct: 592 VYNQAATQTGRLSSSEPNLQNISVRDEEGREIRKAFLPEEGCVLVSSDYHQVELRILAHM 651

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           AK+  L + F+N +DIH   A ++F  ++E+V+P  RR AKT+NF I+YGIS F LA+QL
Sbjct: 652 AKVPNLIKAFQNEMDIHSQTAMDLFDCSLEEVTPLQRRQAKTVNFGIVYGISDFGLASQL 711

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            + R EA D+I++Y+  +P I  Y+E   +F ++NGYVET+  RR    EI+     I+ 
Sbjct: 712 GVSRFEARDFIEKYYRVYPEIKTYMESVIHFCKENGYVETLCHRRREIPEIHDKNKQIQA 771

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ERAA+NAPIQG+AAD+ + AMI V + ++++ L  KM+LQ+HDEL+F VP EE+    
Sbjct: 772 FGERAAMNAPIQGTAADLIKLAMIQVREMIDENHLKAKMILQVHDELIFNVPLEEVEIMK 831

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            II   ME A    ++L VPL   I +   W E
Sbjct: 832 TIIQKGMETA----MSLDVPLTSEISIGQTWYE 860



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/298 (36%), Positives = 165/298 (55%), Gaps = 24/298 (8%)

Query: 7   LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG+S ++R +YAT    P+  +   G+P NA+  F  ML K +   R E++     
Sbjct: 4   LLLVDGNSMLFRGYYATAYGRPM--KTSSGIPTNAVFAFATMLQKAIDIIRPEAVL---- 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR+E+Y  YK  R + PE L+PQ  +VR   +AFGI  +E++  EADD++ 
Sbjct: 58  VAFDAGKHTFRHELYEGYKGGRKQAPEDLVPQFQMVRDYLEAFGIQWVEMENIEADDLVG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178
           +     + + F   I+S+DKDL+QLV   T +        + E++    V +  G+ P +
Sbjct: 118 STA--KQNDCFKTVILSSDKDLLQLVDEKTTVMLMKKGITEMEEMTPSSVKEAMGVTPVQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILE 235
           ++ L+ L GDS DNIPGIPGIG KTA  LL+ YG +E +L +   +K   QKK  E    
Sbjct: 176 IIDLKGLMGDSSDNIPGIPGIGQKTAVKLLETYGTVEEVLAHQGELKGALQKKVNEG--- 232

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
             ++A LS++L  ++TDV +   +  L        +LI FL+ LE  +L+ +  T  D
Sbjct: 233 -HDSALLSKQLATIKTDVSLPYTISQLGFHPTY-DKLIQFLETLEMRQLVRQYHTLMD 288


>gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
 gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
          Length = 881

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 219/538 (40%), Positives = 319/538 (59%), Gaps = 37/538 (6%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQ 510
            K+F  N   LK+ ++ K  K++L R GI +    F D  L  Y+L S   +++IA+IA 
Sbjct: 363 FKEFLGNTA-LKV-YDFKRSKVLLSRLGIELSQPSF-DSRLAKYLL-STVDNNEIATIAN 418

Query: 511 KWLSYTR---KEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            +   TR    E++  K  K ++P          E AI  S++  ++ +L+  +  +  L
Sbjct: 419 LY-GKTRLVEDEVVYGKGAKRALP----------EKAILLSHLARKVTVLVETEKPMTDL 467

Query: 566 LHVYERL------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L  +++L      ++P+  V+++MEI GI+++++ L+ +  E  + L  L + IYDL+GE
Sbjct: 468 LRQHDQLNLLYEMEQPLAFVLAKMEIAGIKVERETLQTMQTENEEVLARLTQEIYDLAGE 527

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SPKQLG ILF KL  P+    KT    +TA D+ +      PI++ IL++RQ++K
Sbjct: 528 EFNINSPKQLGGILFEKLGLPTSFTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAK 587

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           I+STY   L + I     ++HT Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF+ 
Sbjct: 588 IQSTYVMGLQDWI-LADGKIHTRYLQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFV- 645

Query: 740 PPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQ 796
           P  K   L+S+DYSQIELR+LAHI+    L + F +  DIH   A  +FG+   E V+P 
Sbjct: 646 PEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPN 705

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            RR+AK +NF ++YGIS F LA  L I R EA  YI  YF R+PGI  Y+E      R  
Sbjct: 706 DRRNAKAVNFGVVYGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDK 765

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYVET+F RR    +INS   ++R   ER AIN+PIQGSAADI + AMI + ++L D   
Sbjct: 766 GYVETLFHRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDGNF 825

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            T+MLLQ+HDE+V EVPE E+T    ++   ME A    I L VPLK +      W E
Sbjct: 826 KTRMLLQVHDEIVLEVPENELTAIKTLVKDIMESA----IELVVPLKADESAGKTWYE 879



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/296 (39%), Positives = 161/296 (54%), Gaps = 19/296 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ +N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  L++  + 
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPFGLHTNAIYGFHLMLNHLMERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYK  R K PE    QLP +R      GI   ++  
Sbjct: 57  ---PTHILVAFDAGKTTFRTEMYADYKGGRAKTPEEFREQLPFIREMLDKLGIRYYDLDQ 113

Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
           +EADDII T   +AE     + VTI+S DKDL+QL    T +  + K     E+    ++
Sbjct: 114 YEADDIIGTLDKMAENTPVPYDVTIVSGDKDLIQLTDDNTIVEISKKGVAEFEEFTPAYL 173

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           ++K GI P + + L+AL GDS DNIPG+  IG KT   LL EYG+LE I  N  ++KQ K
Sbjct: 174 MEKMGITPAQFIDLKALMGDSSDNIPGVTKIGEKTGLKLLLEYGSLEGIYDNIDQMKQSK 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +EN++   + A LSR LV + T  PI I LE ++ +  N  +L  F   + F + 
Sbjct: 234 MKENLINDKDIAFLSRTLVTIDTQAPIEIGLEDILYQGPNIKQLSRFYDEMGFKQF 289


>gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 887

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 196/525 (37%), Positives = 320/525 (60%), Gaps = 32/525 (6%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS--------SHDIASIAQKWLS 514
           KI  + K D+++L   G+ + G + DIM+ +Y++D+  +        ++D+ S+    + 
Sbjct: 379 KILFDSKRDQVILANAGLDLAGIDFDIMIANYLIDTHLAKELADMLTNNDMPSL----VK 434

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV---YER 571
           Y      K  K ++P      +++ +H    +N +  + LL+ P     K LH+   Y+ 
Sbjct: 435 YDEAVYGKGAKQAVP----DSAELNDHL---ANKVKAMGLLVEPLTQQLKDLHMWDLYQT 487

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+++MEI G+++D  +L   +  + + L  +E  IYDL+GE+FN++S KQLG 
Sbjct: 488 IEMPLARVLARMEIQGVKVDAQILADKNQALLERLAQMEAEIYDLAGEEFNINSVKQLGV 547

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL+ P   KTKTG + T A  LE++    +PII  ILE+RQ+SK++ TY   LP +
Sbjct: 548 ILFEKLELPIIKKTKTG-YSTAADVLEKL-ADKHPIIPAILEYRQISKLQGTYLAGLPTY 605

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750
           I K   ++H+ +    T TGRL+S +PNLQNIP + + G++IR+AF+ +    +L  ADY
Sbjct: 606 I-KEDGKIHSRFVQTLTQTGRLSSADPNLQNIPARIEEGRRIRQAFVPAHEGWQLFGADY 664

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-SPQMRRHAKTINFSII 809
           SQIELR+LAHIA+   +   F++  DIH   A  +FG++ + V    +RR AK +NF I+
Sbjct: 665 SQIELRVLAHIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTVIDANLRRQAKAVNFGIV 724

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + L+  L IPR  A  +I+ YF ++P IH+++E      ++ GYVET+F RR + 
Sbjct: 725 YGISDYGLSNNLNIPRKHAKAFIENYFEKYPDIHQFMEDIVAEAKEKGYVETLFKRRRYL 784

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I++   +IR+  ER A+N+PIQG+AADI + AM+ +  +L++  L +++LL +HDE++
Sbjct: 785 PDIDASNFNIRSFAERTAMNSPIQGTAADIIKIAMVRIQDALDEKGLQSRLLLSVHDEVI 844

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E P EE+   S ++   ME +C   + L VPLKV    +N+W E
Sbjct: 845 LEGPAEEMEVLSDLVPDIME-SC---VELDVPLKVEYNQANDWYE 885



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 150/296 (50%), Gaps = 11/296 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L+DGSS  +RAF++   L R    DGL  NA+  F  ML  +L   +     +H  V 
Sbjct: 6   IVLLDGSSLAFRAFFSILDLERFKNKDGLHTNALFSFNRMLENILDQFQ----PTHILVA 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR + + +YK NR K P     QLP  R+    +GI   ++  +EADDII T 
Sbjct: 62  FDQPGPTFRTKQFEEYKGNRQKTPSEFKEQLPYFRVLLDGYGIQYYDMADYEADDIIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A+ +   V +IS DKDL QL +    +Y T K     E    E + +K+ + P +++
Sbjct: 122 SRQADSDD-EVIVISGDKDLTQLATDNVTVYITRKGVSELEAYTPEVIREKFDLEPLQII 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GDS DN PGI  IG KTA  LL ++  +  +      +K  K +ENI+     A
Sbjct: 181 EMKGLMGDSSDNYPGITRIGEKTALKLLHQFNTVAEMYDRLDELKPSKMKENIINDKANA 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +SR L  + T+VP+   LE +  +      L+ F + ++F   + ++      +A
Sbjct: 241 LMSRDLAEIITNVPLEKNLEDIAYKGKQTDLLMDFYRQMQFNSFLTQLQAQTGLEA 296


>gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 942

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/515 (36%), Positives = 309/515 (60%), Gaps = 27/515 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMR---GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
           K+  ++K     L  +GI +    G++D+ L +Y+L+      +++ +            
Sbjct: 445 KVAFDLKSMAFALDAHGIGLTSECGWQDVKLAAYLLNPQDGEVELSDV-----------F 493

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            + R   +P     + + ++     ++ +  L+  L   + ++++  +Y+ ++ P+  V+
Sbjct: 494 ARERGQELP--AWEEGEREKWLAYTASQLPPLFESLAYTIRMQEMERLYQEVELPLAFVL 551

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++MEITG  ++++ L     E+++ +  + + IYDL+G  FNL+SPKQLG+ILF KL  P
Sbjct: 552 AKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLAGTSFNLNSPKQLGEILFDKLGLP 611

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +  KTKTG + T+A  LE++    + I++ IL++R L+K++STY + L   I K T RVH
Sbjct: 612 ALKKTKTG-YSTSADVLEKL-APMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVH 669

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRI 757
           T +    T TGRL+S EPNLQNIPI+ + G+++R+ F   PT K   + +ADYSQIELRI
Sbjct: 670 TRFHQTLTATGRLSSSEPNLQNIPIRLEEGRRLRQVF--EPTYKDWVIFAADYSQIELRI 727

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH++    L   F   +DIH   AA++F V  E+V+  MRR AK +NF I+YGIS F L
Sbjct: 728 LAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGL 787

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A  L IP+ EA  +I+ YF +FPG+  Y+++     R+ GYV T+  RR +  +I+S   
Sbjct: 788 AQNLNIPQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNY 847

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            +R+  ER A+N PIQGSAAD+ + AM+ + +++ D ++  +MLLQ+HDEL+FE P++E+
Sbjct: 848 QLRSFAERTAMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPKDEL 907

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                ++  +ME A    + L VPLKV+      W
Sbjct: 908 AALEVLVRDNMENA----MTLSVPLKVDTAYGPTW 938



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 172/297 (57%), Gaps = 10/297 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S +YRAF+A P L+ + DG P NA+ GF  M+ +L+ + +     +H AV 
Sbjct: 62  SKLVLIDGNSILYRAFFALPPLTAR-DGTPTNAVYGFTTMILRLMSDEK----PTHLAVA 116

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R + P+ L+ Q PL R   +A  IP +EI  +EADD+I T 
Sbjct: 117 FDKSKTTFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMVEIDQYEADDVIGTL 176

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
              A + GF V ++S DKDL+QLV     +  T K     E  D + V +++ G+ P ++
Sbjct: 177 AKRAAEAGFDVRVVSGDKDLLQLVDDRIHVLLTRKGITEMEHFDEQAVARRYPGLKPAQV 236

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PG+G KTA  LL  +G +E +  +   ++ +K RE + ++ E 
Sbjct: 237 IDLKGLMGDPSDNIPGVPGVGEKTALKLLASFGTVEGVYDHLDEVQGQKLRERLEQHRED 296

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A LS++L  +  D PI + LE L  E  +  R I++ + L+F  L+++++     D+
Sbjct: 297 AFLSKRLATIACDAPIEVDLETLRYEGPDPARAIAWFRELDFRSLVDKISEEMSHDS 353


>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
 gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
          Length = 886

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/490 (38%), Positives = 307/490 (62%), Gaps = 12/490 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D+ + +Y+L+   +S++   I++++L     + KE L  ++       ISD+ ++  A +
Sbjct: 404 DVGIAAYLLNPLENSYNYDDISKEYLEVMLPSEKE-LTGKEELNAFTFISDNFLELFAYK 462

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
               +L +  L+  KL    +  +Y  ++ P +  +  ME  G+++D+  L++ S ++  
Sbjct: 463 ALVPLLAMDTLIE-KLKGTGMYDLYMNVELPTVYTLHDMEKRGVRVDRTALEEYSHKLES 521

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  L ++I + +G+ FN++SPKQLG +LF  +  P G KTKTG + T+A  LE+I    
Sbjct: 522 RIKELHDSIIEYAGKDFNINSPKQLGPVLFEDMALPGGKKTKTG-YSTSADVLEKIK-NV 579

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +PII +ILE+RQLSK+ STYA  L + I+    R+H  ++   T TGR++S +PNLQNIP
Sbjct: 580 HPIINDILEYRQLSKLNSTYAIGLGSFISS-DGRIHGTFNQTITATGRISSTDPNLQNIP 638

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           ++ +LG+ IR+AFI       + ADYSQ+ELR+LAH++  + +   F+N++DIH   A+E
Sbjct: 639 MRMELGRLIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTASE 698

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV I++V+P  RRHAK +NF I+YGIS F L+  L I R EA+D+I++Y+  +  I  
Sbjct: 699 VFGVPIDEVTPLQRRHAKAVNFGIVYGISAFGLSEDLGISRKEASDFIEKYYDTYKSIKT 758

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y++    F ++NGYV+T+FGR     E+ S     R+  ER A+N+PIQGSAADI + AM
Sbjct: 759 YLDGQVKFAKENGYVKTMFGRIRPIPELKSSNFMQRSFGERVAMNSPIQGSAADIIKIAM 818

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           + V+  L++  L ++++LQIHDEL+ E  ++E+ T  +I+V  M  A     ++ VPL+V
Sbjct: 819 LHVNIKLKELGLKSRLILQIHDELLIETAKDEVDTVRKILVDEMMHAA----DMTVPLEV 874

Query: 965 NIKVSNNWQE 974
            +   NNW E
Sbjct: 875 GVASGNNWYE 884



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 189/333 (56%), Gaps = 25/333 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DG S + RAFY  P L+  ++GL  NA+ GF N+++K++     E   ++  V FD
Sbjct: 13  ILIIDGHSILNRAFYGLPDLTN-YEGLHTNAVLGFLNIIFKIID----EEQPTNMCVAFD 67

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y +YK  R  +P+ L  Q+PL++    A  I  IE  G+EADDII T + 
Sbjct: 68  VKQPTFRHLMYKEYKGTRKPMPDELREQVPLIKEVLTAMNITIIEKGGYEADDIIGTLSR 127

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IA+K+G+ V I+S D+DL+QL +       P T    T  E     + V K +G+ P + 
Sbjct: 128 IADKDGYKVVIVSGDRDLLQLATDNILVRIPKTKAGGTTVENYYAAD-VQKLYGVTPVQF 186

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+PGIG KTA  ++QE+ +++N L +   IK  K ++N+ E+A+ 
Sbjct: 187 IDMKGLMGDTSDNIPGVPGIGEKTAGKIIQEWKSIDNALEHIDEIKPPKAQKNLREFADQ 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC--DAA 297
           A++SR+L  ++ D  +   L+   L D    +  + +K LEF  ++ R    +D   DA 
Sbjct: 247 AKMSRELATIKLDCVLDFNLDDTDLFDMFNDKSYNIMKRLEFKSMLKR----FDAKPDAQ 302

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ 330
            ++P +  IN  EN   A++T   RDT I   +
Sbjct: 303 ELKPEITVIN--ENS--ALDTV--RDTVIAAGK 329


>gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
 gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
          Length = 881

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 306/508 (60%), Gaps = 29/508 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           HR G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P D
Sbjct: 387 HRLGLHLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQVPED 446

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+    + E     S  +  L   L   L  ++   ++  ++ P+  V+++MEI GI ++
Sbjct: 447 KL----LFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLN 502

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG++LF KL  P   KTKTG + 
Sbjct: 503 AQTLKNMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG-YS 561

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-----PNHINKRTQRVHTFYSLA 706
           T+   L ++    +PI+++IL++R  +K+ STY   L     P+H      ++HT Y   
Sbjct: 562 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTYVVGLLKAQMPDH------KIHTRYLQT 614

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PN+QNIP + D G+ IR+AF+ S P  ++ S+DYSQIELR+L+HI+   
Sbjct: 615 LTQTGRLSSVDPNMQNIPAR-DEGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            + Q F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + LA  + I 
Sbjct: 674 NMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGIS 733

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  +I  YF ++P +H+Y+E      R++GYVET+F RR +  +I+S   ++R   E
Sbjct: 734 RKKAKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAE 793

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE P  E+    Q++
Sbjct: 794 RTAMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLV 853

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
              M+ A    ++L VPLKV       W
Sbjct: 854 PKIMDSA----VSLVVPLKVESHYGPTW 877



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/296 (36%), Positives = 161/296 (54%), Gaps = 11/296 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAF+A    L R    DGL  NAI  F NML  +L++ + ++ 
Sbjct: 1   MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDAA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 61  L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+  TI++ D+DL QL +  T +  TVK     E    EHV +K G
Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL++YG++EN+  N   +K  K +EN+
Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIENLYANIDAMKTSKMKENL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +   + A LS++L  +  D P+TI L  +     +  +L  F   ++   L+ ++ 
Sbjct: 237 INDKDKAYLSKQLATIDRDAPVTIDLADVKYSGPDLAKLRDFYTKMDMNSLLKKIG 292


>gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
 gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
          Length = 839

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/413 (42%), Positives = 263/413 (63%), Gaps = 8/413 (1%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           E+L  +Y  +++P+  V++ ME  G+++D D L  +S E++  L  LE  I+ L+G  FN
Sbjct: 432 ERLWWLYREVERPLQGVLAAMERRGVKLDVDYLLALSQELAAELERLEAEIHRLAGHPFN 491

Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           L+S  QL  +L+ +L   +G +T KTG+  T+A  LE +  G +PI++ IL++R+L+K+K
Sbjct: 492 LNSRDQLETVLYDELGLAAGRRTAKTGKRSTSASVLETLR-GAHPIVEKILQYRELAKLK 550

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            TY D LP  ++ RT R+HT +    T TGRL+S +PNLQNIPI+T++G++IR+ F++  
Sbjct: 551 GTYLDPLPKLVHPRTGRLHTRFHQTGTATGRLSSSDPNLQNIPIRTEIGRRIRKGFVAGE 610

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+ ADYSQIELR+LAH++    L ++F+   DIH   AA +FGV   +V P  RR A
Sbjct: 611 GYLLVVADYSQIELRVLAHLSGDENLIRIFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAA 670

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KTINF ++YG+S  RL+ +L I   EA  +I RYF  +PG+  ++E+     R+ GYVET
Sbjct: 671 KTINFGVLYGMSAHRLSRELGIDYGEAQAFIDRYFDSYPGVRAFMERVLEEARERGYVET 730

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGRR H  E+ S   ++R   ER A N P+QG+AAD+ + AM+ +   LE   L   +L
Sbjct: 731 LFGRRRHVPELLSKARNVREAAERVAFNMPVQGTAADLIKLAMVKLAPRLE--PLGAALL 788

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDELV E PEE     ++++  +ME+A      L VPL V + V  +W E
Sbjct: 789 LQVHDELVVEAPEERAAETARVVKATMEEAW----RLDVPLAVEVGVGRDWLE 837



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/288 (34%), Positives = 155/288 (53%), Gaps = 7/288 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           K   + LVDG    +R++YA          G PV+A+ GF   L KLL+      I    
Sbjct: 13  KPERIVLVDGHHLAFRSYYALKDAGLSTSSGEPVHAVYGFARTLLKLLREDGDCVI---- 68

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD P  +FR+E +  YKA R   PE   PQ+  ++      G+  +E+ G EADD++
Sbjct: 69  -VVFDAPGPSFRHEEFAGYKAQRVAPPEDFKPQVEKIKQLVDLLGLVRLEVPGVEADDVL 127

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    AE+EG+ V I+++D+D  QL++    +  T  E +I  +++ +K+G+ PE+ V 
Sbjct: 128 ATLARRAEREGYEVVILTSDRDTYQLLTDRVVVV-TPDERRITPDYLRQKYGVGPEQWVD 186

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DNIPG+ G+G KTAA LL  +G+L+ I  +   +     R+ + E  E A 
Sbjct: 187 YRALTGDPSDNIPGVRGVGAKTAAKLLARWGSLDRIYEHLDEVTPPGVRKKLEEGREAAF 246

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            SR++  +R DVP+ + L      + +   L  FL  LEF  L+  + 
Sbjct: 247 FSREISRMRADVPLDVDLTGCHRNEVDREGLRRFLLDLEFGTLLRELG 294


>gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
 gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
          Length = 431

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/409 (45%), Positives = 260/409 (63%), Gaps = 9/409 (2%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++ +++ P+  ++  MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPK
Sbjct: 28  LFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPK 87

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF K+  P   KTKTG + T    LEQ+     PI+ +IL +RQ++KI+STY + 
Sbjct: 88  QLGVILFEKMGLPVIKKTKTG-YSTAVDVLEQLK-EQAPIVADILTYRQIAKIQSTYVEG 145

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI- 746
           L   I     ++HT Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+      LI 
Sbjct: 146 LLKVIQP-DNKIHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIF 204

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+    L + F    DIH   A  +FGV   E V+P MRR AK +N
Sbjct: 205 SSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVN 264

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ R
Sbjct: 265 FGIVYGISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 324

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +INS   ++R+  ER AIN PIQGSAADI + AMI + + L++ KL   MLLQ+H
Sbjct: 325 RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVH 384

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DELVFEVPE E+   +Q++   ME A    ++L VPL  +      W E
Sbjct: 385 DELVFEVPESELEQLNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 429


>gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 876

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 229/642 (35%), Positives = 344/642 (53%), Gaps = 69/642 (10%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVE 425
           ++  +D QQ  +K+E      FK +   +D   S   AI  +     + D  D TS K  
Sbjct: 260 LMTHQDEQQ--EKIELFKKLEFKQLLADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEA 317

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY---------------------LKKFFENEHFLK 464
           TI  +L         G N L   IL +                     L  + EN +  K
Sbjct: 318 TIHFELD--------GGNYLRNNILKFSLFTGEKHIVINADDIINYAELVSWLENPNTKK 369

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL- 521
           + ++ K   +  HR GI ++    DIML SY++D  R+  D+ S+   +  S+ + ++  
Sbjct: 370 VVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSI 429

Query: 522 --KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LD 573
             K +K  +P D + +  V          I       +P +  +K L  Y +      L+
Sbjct: 430 YGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM--DKQLEEYNQVELLADLE 479

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
             +  ++S+ME  GI  D   L+++  EI + L  L  NI+D +GE FN++SPKQLG +L
Sbjct: 480 LSLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVL 539

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQLSK++STY + L   I+
Sbjct: 540 FETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQLSKLQSTYVEGLQKVIS 597

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADY 750
              QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+AF   PT K   ++SADY
Sbjct: 598 D-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KPTSKDSVILSADY 654

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V   MRR AK +NF I+Y
Sbjct: 655 SQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVY 714

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  G+VET+  RR +  
Sbjct: 715 GISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIP 774

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +I S   ++R   ER A+N PIQGSAADI + AM+   + +++     K+LLQ+HDEL+F
Sbjct: 775 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIF 834

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 835 EVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 31/341 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+            
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLL------------ 283

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
                  DI+ + +   AIE   + +T+     F+SL + T
Sbjct: 284 ------ADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEAT 318


>gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7]
 gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7]
          Length = 870

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/527 (38%), Positives = 309/527 (58%), Gaps = 18/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K F  ++   K G++IK        +G+ +  +  D+ L SY+L+      +I S+ + 
Sbjct: 355 FKNFISDKKIEKYGYDIKKSINAAKWHGLEIENYVFDLQLASYILNPSLKD-EIRSVCEY 413

Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +    + Y  +   K  K  +P      S+V EH I+ +  I  L      KL  E    
Sbjct: 414 YEYYDVFYDEEVYGKGAKKKVP----ETSRVAEHLIKQAKAIYILKDQAIEKLNNENQFE 469

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y+ ++ P+  ++++ME  G ++D  +LKQ+  +  + +  LE+ I+ L+  +FN++SPK
Sbjct: 470 LYKDVEMPVAKILARMEFQGAKVDSVVLKQLEEQFGREINILEKEIHTLANREFNIASPK 529

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG++LF  L  P+G KTKTG + T+   L ++    +PII  +L++R LSK+ STY   
Sbjct: 530 QLGEVLFEDLGLPNGKKTKTG-YSTSVDILNKLK-DIHPIIDKVLKYRTLSKLYSTYIIG 587

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L + +     ++HT Y+ A T TGRL+S +PNLQNIP+KT  G+ IR+AF+ P    L+S
Sbjct: 588 LQDQVF-IDGKIHTIYNQALTQTGRLSSTDPNLQNIPVKTPEGKLIRKAFV-PEYDYLVS 645

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            DYSQIELR+LAH+A +  L + F    DIHR  A+EIF V  E+V   MRR+AK +NF 
Sbjct: 646 FDYSQIELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNFG 705

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           IIYG+S F LA Q+ +   EA ++IKRYF  +P I  Y++   +F ++NGYV T+  R+ 
Sbjct: 706 IIYGMSDFGLAEQVGVSVGEAREFIKRYFENYPEIKLYMDSNIDFCKKNGYVTTMLNRKR 765

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
              EIN      +   +R A+N+PIQGSAADI + AMI V + L+ H+L +KM+LQ+HDE
Sbjct: 766 FIREINEKNYMRQEFGKRLAMNSPIQGSAADIIKVAMIKVDELLKKHQLKSKMILQVHDE 825

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+F+V +EE+    +I+   M  A    I + V LK     + NW E
Sbjct: 826 LIFDVYQEELQEVMEIVAKGMTTA----IKMDVELKAEGSYAVNWYE 868



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/293 (36%), Positives = 161/293 (54%), Gaps = 19/293 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L ++DG+S +YRA+YAT  +       DG+P NA+ GF NML  +L+ +       +  V
Sbjct: 4   LVMIDGNSLLYRAYYATAAMGNLMVNKDGVPTNAVYGFANMLESILKGN-----PEYLVV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FDY   TFRN+++  YK  R   P+ L  Q  ++R    A GI   EI+G+E DDII T
Sbjct: 59  AFDYGKKTFRNDLFEVYKGTRSATPDELACQFSMIREYLTAHGIRYQEIEGYEGDDIIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A K+ F V+I+++DKD++QLV     +Y T K     EKI      + +G+ P++M
Sbjct: 119 VAVKASKQRFKVSIVTSDKDMLQLVDDNISVYLTKKGVGELEKITPAKFKEIYGLIPDQM 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEY 236
             L+ L GD  DNIPGIPG+G KTA  LL+EY  +EN+  +   +K K   K R+NI   
Sbjct: 179 RDLKGLMGDKSDNIPGIPGVGEKTALKLLKEYHTVENLSEHLDDLKGKMGEKIRDNI--- 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            +   LS+++  +  DVP+ I LE    +  +   L  F +      L+ R++
Sbjct: 236 -DQGLLSKRIATIIKDVPMEIDLEEYRYQGHDYNELAEFYRRYSMNSLLKRMS 287


>gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 895

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/515 (36%), Positives = 309/515 (60%), Gaps = 27/515 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMR---GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
           K+  ++K     L  +GI +    G++D+ L +Y+L+      +++ +            
Sbjct: 398 KVAFDLKSMAFALDAHGIGLTSECGWQDVKLAAYLLNPQDGEVELSDV-----------F 446

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            + R   +P     + + ++     ++ +  L+  L   + ++++  +Y+ ++ P+  V+
Sbjct: 447 ARERGQELP--AWEEGEREKWLAYTASQLPPLFESLAYTIRMQEMERLYQEVELPLAFVL 504

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++MEITG  ++++ L     E+++ +  + + IYDL+G  FNL+SPKQLG+ILF KL  P
Sbjct: 505 AKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLAGTSFNLNSPKQLGEILFDKLGLP 564

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +  KTKTG + T+A  LE++    + I++ IL++R L+K++STY + L   I K T RVH
Sbjct: 565 ALKKTKTG-YSTSADVLEKL-APMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVH 622

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRI 757
           T +    T TGRL+S EPNLQNIPI+ + G+++R+ F   PT K   + +ADYSQIELRI
Sbjct: 623 TRFHQTLTATGRLSSSEPNLQNIPIRLEEGRRLRQVF--EPTYKDWVIFAADYSQIELRI 680

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH++    L   F   +DIH   AA++F V  E+V+  MRR AK +NF I+YGIS F L
Sbjct: 681 LAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGL 740

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A  L IP+ EA  +I+ YF +FPG+  Y+++     R+ GYV T+  RR +  +I+S   
Sbjct: 741 AQNLNIPQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNY 800

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            +R+  ER A+N PIQGSAAD+ + AM+ + +++ D ++  +MLLQ+HDEL+FE P++E+
Sbjct: 801 QLRSFAERTAMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPKDEL 860

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                ++  +ME A    + L VPLKV+      W
Sbjct: 861 AALEVLVRDNMENA----MTLSVPLKVDTAYGPTW 891



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 172/297 (57%), Gaps = 10/297 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S +YRAF+A P L+ + DG P NA+ GF  M+ +L+ + +     +H AV 
Sbjct: 15  SKLVLIDGNSILYRAFFALPPLTAR-DGTPTNAVYGFTTMILRLMSDEK----PTHLAVA 69

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R + P+ L+ Q PL R   +A  IP +EI  +EADD+I T 
Sbjct: 70  FDKSKTTFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMVEIDQYEADDVIGTL 129

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
              A + GF V ++S DKDL+QLV     +  T K     E  D + V +++ G+ P ++
Sbjct: 130 AKRAAEAGFDVRVVSGDKDLLQLVDDRIHVLLTRKGITEMEHFDEQAVARRYPGLKPAQV 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PG+G KTA  LL  +G +E +  +   ++ +K RE + ++ E 
Sbjct: 190 IDLKGLMGDPSDNIPGVPGVGEKTALKLLASFGTVEGVYDHLDEVQGQKLRERLEQHRED 249

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A LS++L  +  D PI + LE L  E  +  R I++ + L+F  L+++++     D+
Sbjct: 250 AFLSKRLATIACDAPIEVDLETLRYEGPDPARAIAWFRELDFRSLVDKISEEMSHDS 306


>gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 876

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 313/539 (58%), Gaps = 37/539 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++S+L    EN +  K+ ++ K   +  HR  I ++    DIML SY++D  R+  D+ 
Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLEIDIQNISFDIMLASYIIDPSRTISDVQ 412

Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           S+   +  S+ + ++    K +K  +P D + +  V          I       +P +  
Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462

Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           +K L  Y +      L+ P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D 
Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE FN++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQ
Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK++STY + L   I+   QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+A
Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   PT K   ++SADYSQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V
Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
              MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       
Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAADI + AM+   + +++
Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+  +  +   + A
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295

Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333
                 IE    +I+ T  K  AI  E+D     R+  +K S F+ 
Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341


>gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
 gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
          Length = 880

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/490 (39%), Positives = 289/490 (58%), Gaps = 11/490 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D  L +Y+++  +S+++   I++ +L     ++KE+L  RKS     K+     Q    E
Sbjct: 397 DAALAAYLINPLKSTYEYDDISRDYLGIMLPSKKELLDKRKSIFEEGKLLPEGEQIIGYE 456

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            + V       LR KL    +L +YE ++ P +  +  ME+ GI +D+  LK+   ++  
Sbjct: 457 -AYVACACIEPLRKKLTETGMLSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIG 515

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  L E IY  +GE+FN++SPKQLG +LF  +K   G KTKTG + T+   LE+I    
Sbjct: 516 RIEELRELIYKEAGEEFNINSPKQLGVVLFEHMKLEGGKKTKTG-YSTSVDVLEKIEH-L 573

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            PII  ILE+RQL+K+KSTYAD L N+I    +R+H  ++   T TGR++S EPNLQNIP
Sbjct: 574 YPIISYILEYRQLTKLKSTYADGLANYIGD-DERIHGKFNQTITATGRISSTEPNLQNIP 632

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
            + +LG+ IR+ F+       + ADYSQIELR+LAH++    L   +E   DIH   A+E
Sbjct: 633 ARVELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSGDKNLIHAYEMEQDIHARTASE 692

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV I++VS   RR AK +NF I+YG+S F L+  L+I R +A +YI +YF  +P + E
Sbjct: 693 VFGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQDLKITRKQAQEYIDKYFETYPKVKE 752

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+ +     ++ G+V T+F R     E+ S     RN  ER A+N+PIQGSAADI + AM
Sbjct: 753 YLNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQRNFGERVAMNSPIQGSAADIIKIAM 812

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I V+  L+  KL ++++LQIHDEL+ E  + E+     I+   M  A      L VPL +
Sbjct: 813 IRVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAA----KLSVPLSI 868

Query: 965 NIKVSNNWQE 974
           +I   N+W E
Sbjct: 869 DIHTGNSWYE 878



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 168/291 (57%), Gaps = 13/291 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L L+DG S + RAFYA P ++    GL  NAI GF N+++K L   +     +HFAV
Sbjct: 5   EKKLMLIDGHSILNRAFYALPDMTNSK-GLHTNAILGFLNIMFKFLDEEK----PTHFAV 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+E++ +YK  R  +PE L  Q+P+++   +A  IP +  +G+EADD++ T
Sbjct: 60  AFDLSAPTFRHEMFKEYKGTRKPMPEELREQVPVIKEVLKAMDIPLMMEEGYEADDLLGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPP 176
            + I EKEG+ V IIS D+DL+QL +       P T     V E+    + V++ +G+ P
Sbjct: 120 MSVIGEKEGYQVRIISGDRDLLQLATENVQIRIPKTKGGGNVVEDYF-AKDVMETYGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DNIPGIPGIG KTA+ +++E+ ++EN   +   +  K+ +  + E+
Sbjct: 179 REFIDMKALMGDASDNIPGIPGIGEKTASKIIKEFKSIENAYEHIEEVMPKRAKNKLEEF 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +   LS++L  ++ D PI +  E     D         LK LEF  ++ +
Sbjct: 239 YDQGVLSKELATIKLDCPIELSFEDAKFNDIFTGEAYQLLKQLEFKSVLKK 289


>gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 583

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 221/562 (39%), Positives = 330/562 (58%), Gaps = 46/562 (8%)

Query: 443 NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           N L K+ +L  L+   E++++ K+  N K+D+L+    GI++ G   D ML SYVL   +
Sbjct: 36  NQLKKQKVLDSLRTILESKNYPKVFQNTKFDRLIFKHQGINLDGVVFDTMLASYVLHPEK 95

Query: 501 SSHDIASIAQKWL----SYTRKEILKSRKSSIP---IDKISDSQVQEHAIENSNVILQLW 553
           S H ++ + +++L    S   KE+   +K +I    IDK++     E+   ++     L 
Sbjct: 96  S-HKLSELCEQYLEGITSQNYKELGIGKKQTIADLEIDKVA-----EYCGMDAYATFLLV 149

Query: 554 LLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
             L+ +L  V  L  +   +++P+  V+S ME TGI ID + L ++S ++ K+LL LEE 
Sbjct: 150 EPLKNELKQVSSLEKLLLEVEQPLEAVLSIMEDTGILIDTEYLGELSKQLEKDLLILEEK 209

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
            Y+++G KFNL SPKQLG+ILF KL+       KTKTG + T    L+++  GD+PII  
Sbjct: 210 AYEVAGGKFNLGSPKQLGEILFEKLELNRKKSRKTKTG-YSTDHATLDKLK-GDHPIIDY 267

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           ILE+R LSK+KSTY D+LP  ++ +T+R+HT ++ + T TGRL+S  PNLQNIPI+T+  
Sbjct: 268 ILEYRTLSKLKSTYIDALPELVDTKTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFS 327

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           ++IR+AFI      L+SADYSQIELRILAH+++   L   ++N+ D+H + A  +F    
Sbjct: 328 RQIRQAFIPQKDWLLVSADYSQIELRILAHLSQEPVLLNAYQNTEDVHTVTAKLLF--EK 385

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           EK++ Q R   KTINF +IYG+   R A +  +  +E  ++I +Y  R+  + EY+E  K
Sbjct: 386 EKITSQERNLGKTINFGVIYGMGSQRFAREAGVTAAEGKEFINKYRQRYAKVFEYLESMK 445

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIR------------NINE------RAAINAPI 892
                NGYV TI GRR +++  +      R            NIN       RAA NAPI
Sbjct: 446 KEAIANGYVTTILGRRRYFNFFDDNLYRFRGHDPQTIDLNQLNINYNDSQLLRAAANAPI 505

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGS+ADI + AM+ + + L +H  A  +LLQ+HDELVFE+P +E       I  +ME A 
Sbjct: 506 QGSSADIIKIAMVKIQEIL-NHCQAN-LLLQVHDELVFEIPVKEWEKLENKIKETMENA- 562

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L +PL V I    NW E
Sbjct: 563 ---VKLTIPLVVEIHAGKNWME 581


>gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 871

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 173/421 (41%), Positives = 267/421 (63%), Gaps = 7/421 (1%)

Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
             L  +L  +K+ H++  ++ P+   +  ME  G+++  + LK    ++   +  LE  I
Sbjct: 456 FFLSDRLKEKKMEHLFTDIEMPLAFTLFDMEQAGVKVKAEELKVYGQQLGGKINELETEI 515

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
           Y+++GE FN++SPKQLG +LF  L  P+G KTKTG + T A  LE++   D PI+  ILE
Sbjct: 516 YEIAGETFNINSPKQLGVVLFEHLNLPNGKKTKTG-YSTAADVLEKL-APDYPIVSKILE 573

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           +RQL+K+KSTYAD L N I +   R+H  ++   T TGR++S EPNLQNIP++ +LG+ I
Sbjct: 574 YRQLAKLKSTYADGLANFI-QEDGRIHGKFNQTVTATGRISSTEPNLQNIPVRMELGRLI 632

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R+ F+       + ADYSQIELRILAH +    L   ++ + DIHR+ A+++F +  ++V
Sbjct: 633 RKVFVPEEDYVFVDADYSQIELRILAHCSGDESLISAYKEARDIHRITASQVFHIPFDEV 692

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +   RR+AK +NF I+YGIS F L+  L I R EA +YI  YF  +PGI  +++ T    
Sbjct: 693 TDLERRNAKAVNFGIVYGISSFGLSQDLSITRKEAGEYIDNYFKTYPGIKTFLDDTVAHA 752

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           ++ GYV T+FGRR    E+ S     R+  ER A+NAPIQG+AADI + AMI V+++L++
Sbjct: 753 KEQGYVVTLFGRRRPVPELESGNFMQRSFGERVAMNAPIQGTAADIMKIAMIGVNRTLKE 812

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            ++ +K++LQ+HDEL+ E  ++E+     I+   ME+A     +L VPL +++   N+W 
Sbjct: 813 KQMKSKLVLQVHDELLIEAYKDEVEEVKSILKREMEEAA----SLSVPLDIDMHTGNSWY 868

Query: 974 E 974
           E
Sbjct: 869 E 869



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 167/287 (58%), Gaps = 11/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NAI GF N+L+K+L+  + E    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGVPDLTNS-EGLHTNAIYGFLNILFKILEEEKPE----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E+Y +YK  R  + E L  Q+P+++   QA G+  IE  G+EADD++ T + 
Sbjct: 60  VHAPTFRHEMYDEYKGTRKPMLEELRQQVPVMKEVLQAMGVKLIEQAGYEADDLLGTLSV 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180
           +AE++G  V+IIS D+DL+QL +    +     K+ K +IE+     V +K+ + P++ +
Sbjct: 120 LAEEKGMDVSIISGDRDLLQLATEKVKIRIPKTKKGKTEIENYYAKDVEEKYFVTPKEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+  IG KTA  ++ ++ ++EN   +   +K  +  + + E  + A
Sbjct: 180 DLKALMGDTSDNIPGVASIGEKTATKIITQFHSIENAYAHLDELKPPRAGKALQEQYDKA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           ++S++L  +   VP++   E   L +        + + LEF  L++R
Sbjct: 240 QMSKELATIHVHVPVSYDFEEAKLGNLYTEEAYVYFQKLEFKNLLSR 286


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 197/528 (37%), Positives = 317/528 (60%), Gaps = 35/528 (6%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           LK  FENE   K+ H+ K   +VL+++ I+ +    D  + +Y+L   +S + +  + ++
Sbjct: 378 LKNLFENEKIKKVCHDSKKVYVVLNKHNITAKNIAFDTKIAAYLLQPSKSDYMLKDLIEE 437

Query: 512 WLSYTRKEILKSRKSSIPIDK---ISD-SQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            L  + KE       +I I++   I D  +  E  I+ SN+              E+LL+
Sbjct: 438 MLLLSLKEY-----DNIKINETYYIKDIYEKLEKDIKESNM--------------EELLY 478

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
             E    P+++V++ ME  G ++D++ L ++  +  K + +LE+ I++L+ E+FN+ SPK
Sbjct: 479 TVEL---PLVEVLASMECAGFRVDENRLTEIGEKFKKEIETLEKEIHELADEEFNIKSPK 535

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T A+ LE++    +PII+ I+E+RQ++K+ STY + 
Sbjct: 536 QLGKILFEKLDLPVIKKTKTG-YSTNAEVLEKLK-DKHPIIEKIIEYRQITKLDSTYVEG 593

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI- 746
           L N I+    ++H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ F+    + +I 
Sbjct: 594 LKNVIDG-DGKIHSSFNQTVTTTGRLSSTEPNLQNIPIKHEMGREIRKVFVPNNNESVIF 652

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           SADYSQIELRIL+HIA    L   F++  DIH + A+E+F V I++V+P MR +AK +NF
Sbjct: 653 SADYSQIELRILSHIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNF 712

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGI  F L+  + + R EA +YI  YF R+P + +YI++  +    +G+V TI  R+
Sbjct: 713 GIVYGIGAFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDEIISKAEVDGFVTTILNRK 772

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  EI S    +R   ER A+N PIQGSAADI + AM+ V+  L++  L + ++LQ+HD
Sbjct: 773 RYIPEIQSRNKIVRGFGERLAMNTPIQGSAADIIKLAMVEVYNELKNRNLKSTLILQVHD 832

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+  V ++E+     ++V  ME      + L VPL+ ++     W E
Sbjct: 833 ELILNVYKDELEEVKNMVVDKMENV----MKLLVPLEADVNAGETWYE 876



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 13/294 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++DG S +YRAF+A P L+ K +G+  NAI GF  ML K+     KE I   
Sbjct: 1   MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKM-----KEEINPD 53

Query: 61  FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + V  FD  A TFR++ Y DYKA R K+P+ L  Q P+V+       I   EI+GFEADD
Sbjct: 54  YIVTTFDKKAPTFRHKEYEDYKAGRAKMPDELNEQFPIVKDILNKLAINIFEIEGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           +I T +  AE++G  V I++ D+D +QL +    +    K    +E  D   +I+++G+ 
Sbjct: 114 LIGTLSKFAEEKGIEVYIVTGDRDALQLATDNVKVVINKKGMSEKEIYDKNKMIEEYGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++ L GD  DNIPG+PGIG KTA  L++EYG++EN+L N   I  KK ++N+++
Sbjct: 174 PTQFIDVKGLMGDKSDNIPGVPGIGNKTALKLIKEYGSIENVLENVENISGKKMKQNLID 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRV 288
           Y E A  S+KL  +  DVPI I L  +   ED +   +    ++L F  LI+ +
Sbjct: 234 YREQAIFSKKLATICKDVPIEIDLGEIKSKEDYDIEGVRQLFQSLGFKSLIDNI 287


>gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
 gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
          Length = 876

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 229/642 (35%), Positives = 344/642 (53%), Gaps = 69/642 (10%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVE 425
           ++  +D QQ  +K+E      FK +   +D   S   AI  +     + D  D TS K  
Sbjct: 260 LMTHQDEQQ--EKIELFKKLEFKQLLADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEA 317

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY---------------------LKKFFENEHFLK 464
           TI  +L         G N L   IL +                     L  + EN +  K
Sbjct: 318 TIHFELD--------GGNYLRNNILKFSLFTGEKHIVINADDIINYAELVSWLENPNTKK 369

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL- 521
           + ++ K   +  HR GI ++    DIML SY++D  R+  D+ S+   +  S+ + ++  
Sbjct: 370 VVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSI 429

Query: 522 --KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LD 573
             K +K  +P   + +  V          I       +P +  +K L  Y +      L+
Sbjct: 430 YGKGKKFKVPEVDVLNPYVAS--------ITDAIYFAKPNM--DKQLEEYNQVELLADLE 479

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+  ++S+ME  GI  D   L+++  EI + L  L  NI+D +GE FN++SPKQLG +L
Sbjct: 480 LPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVL 539

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F  L+ P   KTKTG + T    LEQ+  G++PII  ILE+RQLSK++STY + L   I+
Sbjct: 540 FETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQLSKLQSTYVEGLQKVIS 597

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADY 750
              QR+HT ++     TGRL+S++PNLQNIP++ + G+KIR+AF   PT K   ++SADY
Sbjct: 598 D-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KPTSKDSVILSADY 654

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LAHI +   + + F N  DIH   A ++FGV  ++V   MRR AK +NF I+Y
Sbjct: 655 SQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVY 714

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  G+VET+  RR +  
Sbjct: 715 GISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIP 774

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +I S   ++R   ER A+N PIQGSAADI + AM+   + +++     K+LLQ+HDEL+F
Sbjct: 775 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIF 834

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EVP+ E+ + S+ +   ME A    + L VPLKV+      W
Sbjct: 835 EVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 31/341 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  KK +E +    E
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + LE  L+         I   K LEF +L+            
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLL------------ 283

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
                  DI+ + +   AIE   + +T+     F+SL + T
Sbjct: 284 ------ADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEAT 318


>gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 504

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 201/507 (39%), Positives = 305/507 (60%), Gaps = 12/507 (2%)

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           +VL  YG  ++G   D M+  YVL      H +  +A+ +L Y      E++  + K+  
Sbjct: 2   IVLQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 60

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    V  +A E++++ L+L  +L  +L       ++  ++ P++ V+  +E  G+
Sbjct: 61  NMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 120

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647
            +D + L+Q SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK    AK TKT
Sbjct: 121 LLDTEALQQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKT 180

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   
Sbjct: 181 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFNQTV 239

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +
Sbjct: 240 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 299

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R E
Sbjct: 300 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 359

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER A
Sbjct: 360 AKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 419

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  
Sbjct: 420 INAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 479

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           MEKA      + VPLK +     NW E
Sbjct: 480 MEKA----YRMHVPLKADCGWGKNWLE 502


>gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470]
 gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470]
          Length = 858

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 189/493 (38%), Positives = 292/493 (59%), Gaps = 26/493 (5%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           F D+ L+SYVL+  R+++ ++ +A+ +              + P+        +E ++  
Sbjct: 386 FYDMTLVSYVLEPTRTTYPLSYMAELF-------------GTSPVFPDHLDTEEEKSVCI 432

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI--- 602
              +L L+      +    +  ++E+++ P+  V+++ME  GI  DQ   + V  E+   
Sbjct: 433 CGFLLSLYATSLEHMKSNGVQSLFEKIENPLAAVLAEMEKAGIATDQKRWEAVCHELKVQ 492

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
            + LLSL   IY+ +GE+FN++SPKQLG ILF K+  P+G KTK G   +TA D+ ++  
Sbjct: 493 ERKLLSL---IYEAAGEEFNVNSPKQLGVILFEKMGMPAGKKTKNGY--STAADVLEMLA 547

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
              P +K+ILE+R +SK+ STY ++LP  I   T R+HT ++   T TGRL+S +PNLQN
Sbjct: 548 KSYPFVKDILEYRTISKLISTYLEALPLLIRPETGRIHTSFNQTVTATGRLSSSDPNLQN 607

Query: 723 IPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           IP++T  G++IR  F+  P     IS+DYSQ+ELR+LAH++    L + F N  DIHR  
Sbjct: 608 IPVRTAEGRQIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRRT 667

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+ G+  E+V+ + R HAK +NF IIYGIS F LA QL I R EA  YIK+YF R+P 
Sbjct: 668 AAEVLGIPFEEVTSEQRSHAKAVNFGIIYGISDFGLANQLGISRGEAGTYIKKYFERYPY 727

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           IH +++      +++G  +T+FGR     +I S   + R+  ER A+N PIQG+AADI +
Sbjct: 728 IHAFMKSMVEDAQESGRAKTLFGRYRELPDIRSSNFNRRSFAERTAMNTPIQGTAADIMK 787

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V + +++    +++LLQ+HDELV E   EE      ++  +ME      + L+VP
Sbjct: 788 LAMIEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKENLKTLLKETMESV----VELKVP 843

Query: 962 LKVNIKVSNNWQE 974
           L  ++    NW E
Sbjct: 844 LIADVHEGKNWAE 856



 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 109/291 (37%), Positives = 165/291 (56%), Gaps = 13/291 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L +VDGSS +YRAF+  P LS  + G+P NA+ GF NML+ + +N   E    + AV
Sbjct: 2   EKKLVVVDGSSLLYRAFFGLPPLS--YHGIPTNAVMGFLNMLYDIYKNFDPE----YMAV 55

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E+Y +YKA R   P  L+PQ  L+R A +  G    E+ G+E DDI+ T
Sbjct: 56  SFDKNKQTFRSEVYKEYKATRKPAPPELVPQFALIREALRTLGAAVYEVDGYEGDDILGT 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                EKE   V I++ D+D +QL +  T +Y T +       +  E V++K+GI P ++
Sbjct: 116 LAARYEKE-LPVFIVTGDRDALQLATKDTTVYITQRGVSQMAAMTPEAVVEKYGITPRQV 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PG+G KTAA LL +Y  L+N+  +   IK    +  +    E 
Sbjct: 175 IDMKALMGDTSDNIPGVPGVGEKTAAKLLSQYQTLDNLYGHVGEIKGAVGK-RLAANKEL 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           A LS +L  ++TDVP    LE +  +  +   ++ F   L   ++ +R +T
Sbjct: 234 AYLSYRLATIKTDVPFEAALEEM-KQPVHFEEMMEFFHRLGLERIADRYST 283


>gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
 gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
          Length = 889

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 315/529 (59%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
           LK+F E    LK+ ++ K  K++L+R+G+ ++    D  L  Y+L S   +++I++IA  
Sbjct: 371 LKEFLEKTP-LKV-YDFKKAKVLLNRFGLDLQAPAFDSRLAKYLL-STVENNEISTIANL 427

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q +L        K  K +IP          EH +    V+++   +L  KL     L 
Sbjct: 428 YGQTYLVDDETFYGKGVKKAIP----ERETFLEHLVRKVAVLVETEPVLLEKLSENGQLD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+GE+FN++SPK
Sbjct: 484 LLYDMEQPLALVLAKMEIAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG++LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY   
Sbjct: 544 QLGELLFEKLGLPIEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 603

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 604 LQDWI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F L+  L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F R
Sbjct: 723 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 782

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L   +  TKMLLQ+H
Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGRYQTKMLLQVH 842

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+ +  +++  +ME+A    I L VPL  +      W E
Sbjct: 843 DEIVLEVPKSELASIKKLVKQTMEEA----IQLSVPLIADENEGVTWYE 887



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/285 (40%), Positives = 154/285 (54%), Gaps = 11/285 (3%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L   K+D GL  NAI GF  ML  LL+  +     SH  V
Sbjct: 18  LLLIDGSSVAFRAFFALYQQLDRFKNDNGLHTNAIYGFHLMLNHLLERVQ----PSHILV 73

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 74  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 133

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +A+K+ F VTI+S DKDL+QL    T +  + K     E    E++++K GI P + 
Sbjct: 134 LGRLAKKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKMGITPAQF 193

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDSMKASKMKENLVNDKEQ 253

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           A LS+ L  + T  PI I L+ L+    +   L  F   + F +L
Sbjct: 254 AFLSKTLATIDTKAPIEISLDDLVYSGPDIENLGKFYDEMGFKQL 298


>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
 gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
          Length = 857

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 192/494 (38%), Positives = 293/494 (59%), Gaps = 32/494 (6%)

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G+S+   ED +L++Y+LD+  ++  +  +AQ  L            +  P D        
Sbjct: 391 GVSVEPGEDPLLIAYLLDNTVTNASL--LAQAHLG-----------APWPDD-------- 429

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
             A   +    QL   LRP+L  EK   +Y+ +++P+  V+++ME+ G+++D   L+ +S
Sbjct: 430 --APTRALATAQLLTALRPQLD-EKRAQLYKDVERPLAHVLARMEVRGVRLDSAYLRGLS 486

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQDLE 658
             +      L+  I +L+G  F+++S  QL  +L+ +L   SG KTK TG+  T    LE
Sbjct: 487 DSLGARAQELDARIQELAGHPFSVNSRDQLESVLYDELGLASGKKTKLTGKRSTAVSALE 546

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +   ++PII  +LE+R+L+K+K TY D LPN +N  T R+HT ++  +  TGRL+SL P
Sbjct: 547 PLR-DEHPIIPLLLEYRELTKLKGTYLDPLPNLVNPLTGRLHTTFAQTAVATGRLSSLNP 605

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G++IR+ FI+     LISADYSQIELR+LAHIA    + + F    DIH
Sbjct: 606 NLQNIPIRSETGREIRKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVGGADIH 665

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AA++ GV  + V+P  RR AKT+NF ++YG+S  RL+  L I  +EA+ +I+RYF  
Sbjct: 666 RRTAAQVLGVMEDLVTPNQRRAAKTVNFGVLYGMSAHRLSNDLGISFAEASRFIERYFAT 725

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EYI+ T  F R++GYVET++GRR    E+ S   ++R   ER A N PIQG+AAD
Sbjct: 726 YPRIREYIDATLAFGREHGYVETMYGRRRLVPELRSANRTMREAGERVAYNMPIQGTAAD 785

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ + + L    L  ++LLQ+HDEL+ E P +     + +    ME      + L
Sbjct: 786 IIKIAMVELDEQLS--ALGARLLLQVHDELLIEAPSDRADEVAALTRRVMEGV----VTL 839

Query: 959 RVPLKVNIKVSNNW 972
           +VPL+V I    NW
Sbjct: 840 KVPLRVEIGTGPNW 853



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 165/302 (54%), Gaps = 14/302 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M   + + L+DG +  YR+++A P L+    G   NAI GF  +  +L     ++ +++ 
Sbjct: 4   MTAPDTVVLIDGHALAYRSYFAIPPLTNSA-GESTNAILGFLRLTLRL-----EKQVSNQ 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD P  TFR+E +  YKA R + PE L  Q+  +R    A G+P +E+ G+EADD+
Sbjct: 58  VIVVFDPPVKTFRHEQFEGYKAGRAQTPEDLPKQINRIRSLVDAMGLPRLEVPGYEADDV 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    AE +G  V I+++D+D  QL+S    +  T   + +  + V++K+G+   + V
Sbjct: 118 IGTLAKRAEAQGLNVRIVTSDRDAYQLLSERVKVL-TSDFKLLGPDEVLEKYGVTVGQWV 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAE 238
             +ALTGD+ DNIPG  GIG KTAA LLQE+G+L+ +L    A  +K K  +E I    +
Sbjct: 177 DYRALTGDASDNIPGAKGIGPKTAAKLLQEHGSLDAVLQAAEAGALKPKGTQEKIAASVQ 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPR--LISFLKALEFTKLINRVATTYDCDA 296
               SR+L  + TD+P+ + L  L     +G R   ++ L+ LE   L+  V       A
Sbjct: 237 DVLFSRELSCMVTDLPLDVELGAL---RGHGDRDAALAILRELELNSLLKDVDALMSAQA 293

Query: 297 AN 298
           A 
Sbjct: 294 AG 295


>gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
 gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
          Length = 873

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 190/490 (38%), Positives = 299/490 (61%), Gaps = 12/490 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE 544
           DI +M+Y+L+     ++   IA  ++  T   R +I+   K S  +    D  V+  A+E
Sbjct: 391 DIAIMAYLLNPLLQEYEYNDIANDFMGITVEGRSDIIGKNKVSSYLTDGFDKIVKLFALE 450

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            + V    +     +L    +  VY  ++ P+I V+  ME  GI +++D LKQ   E+S 
Sbjct: 451 -AYVAFNSFDEAMKRLRETDMEKVYHDIELPVIYVLKSMEKYGIAVNKDALKQYGDELSV 509

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  LE++IY  +G +FN++SPKQLG++LF KL  P G KTKTG + T+A  LE+++  D
Sbjct: 510 KIKDLEQSIYKEAGTEFNINSPKQLGEVLFEKLNLPCGKKTKTG-YSTSADVLEKLSA-D 567

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            PI+ +ILE+R L+K+KSTYAD L  +I     R+H+ ++   T TGR++S EPNLQNIP
Sbjct: 568 YPIVDSILEYRTLAKLKSTYADGLAEYI--VDGRIHSTFNQTITATGRISSTEPNLQNIP 625

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           I+ +LG+KIR+ F+       + ADYSQIELR+LAH++    L + +    DIH++ A++
Sbjct: 626 IRMELGRKIRKVFVPEDGFIFMDADYSQIELRLLAHMSGDDTLIEAYNEDRDIHKITASK 685

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F   +++V+P+ R +AK +NF I+YGIS F L+  L I + EA +YI  YF+ +  +  
Sbjct: 686 VFKTPLDEVTPRQRSNAKAVNFGIVYGISSFGLSRDLSISKKEAKEYIDEYFNTYKTLKN 745

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y++      ++NGY +TI+GRR    E++S     R   ER A+N+P+QG+AADI + AM
Sbjct: 746 YLDNLVKSAKENGYTKTIYGRRRPVPELSSGNFMQRQFGERIAMNSPLQGTAADIIKIAM 805

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I+V+K L++ +L ++++LQIHDEL+ E    E     +I+   M  A      LRVPL +
Sbjct: 806 INVYKRLKNERLESRLILQIHDELLIETKIGEEEQVRKILSEEMVNAA----TLRVPLAI 861

Query: 965 NIKVSNNWQE 974
           +I    +W E
Sbjct: 862 DIHSGKDWYE 871



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 153/262 (58%), Gaps = 11/262 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N+L L+DG S + RAFY  P+L+  H+G+  NAI GF N++ K +++ +    + H AV 
Sbjct: 2   NNLLLIDGHSIMNRAFYGIPMLTN-HEGIHTNAIYGFINIMLKAMEDEK----SDHIAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+++Y  YK  R  +P  L  Q+P+++    +  IP I ++G+EADDI+ T 
Sbjct: 57  FDLKAPTFRHKMYEMYKGTRKPMPAELHEQVPVIKEILASMNIPVITLEGYEADDILGTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
              A+  G+ V I+S D+DL+QL        L  T+K     E    E V++K+   P +
Sbjct: 117 GKKAQSLGYNVVILSGDRDLLQLADEHIKIRLPKTIKGRTEIENYYPEDVMEKYMATPSE 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L+AL GDS DNIPG+PGIG KTA  ++ +Y ++EN   +   +   K + ++ E  +
Sbjct: 177 FIDLKALMGDSSDNIPGVPGIGEKTAMSIISKYHSIENAYEHVEELTPAKAKNSLRENYD 236

Query: 239 TARLSRKLVMLRTDVPITIPLE 260
            A+LS+ L  + TD P+   +E
Sbjct: 237 LAKLSKVLATIETDAPVEFNIE 258


>gi|332687082|ref|YP_004456856.1| DNA polymerase I [Melissococcus plutonius ATCC 35311]
 gi|332371091|dbj|BAK22047.1| DNA polymerase I [Melissococcus plutonius ATCC 35311]
          Length = 887

 Score =  344 bits (882), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 206/513 (40%), Positives = 304/513 (59%), Gaps = 29/513 (5%)

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSR--KSSI 528
            L+RY   M+G   DI+L +Y+L++  ++ DI  +A+++  YT     E +  R  K  +
Sbjct: 389 ALNRYVGKMQGISFDILLAAYLLNTNDTNTDIECVARQY-GYTDIQSDEAVYDRGAKKKV 447

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P +K        H       I  L   L   L+ +   +++  ++ P+  +++ MEITGI
Sbjct: 448 PQEK---EIFYNHLAHKIKAIEYLSEKLAADLVEKNQANLFSEMELPLSRILADMEITGI 504

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D   L+++  E S  L ++E+ IY  +GE+FN++SPKQLG ILF K+  P   KTKTG
Sbjct: 505 HVDAHRLEEMQGEFSDQLKAIEQKIYTEAGEEFNINSPKQLGVILFEKMGLPVIKKTKTG 564

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-----PNHINKRTQRVHTFY 703
            + T    LEQ+     PI+++IL +RQ++KI+STY + L     P+H      +VHT Y
Sbjct: 565 -YSTAVDVLEQLK-ERAPIVEDILIYRQIAKIQSTYVEGLLKVIQPDH------KVHTRY 616

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIA 762
               T TGRL+S++PNLQNIPI+ + G+KIR+AFI      LI S+DYSQIELR+LAHI+
Sbjct: 617 LQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQAFIPREKDWLIYSSDYSQIELRVLAHIS 676

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
               L   F    DIH   A  +F ++  E+V+P MRR AK +NF I+YGIS + L+  L
Sbjct: 677 NDEHLKAAFLEQQDIHASTAMRVFNLSSPEEVTPNMRRQAKAVNFGIVYGISDYGLSKNL 736

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I R +A  YI  YF+++P +  Y+E+     +  GYVET++ RR +  +INS   ++R+
Sbjct: 737 EISRQQAQQYIDTYFNKYPSVKTYMEEIVREAKDKGYVETLYHRRRYLKDINSRNYNLRS 796

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER AIN PIQGSAADI + AMI + + L++  +   MLLQ+HDELVFEVP  E+    
Sbjct: 797 FAERTAINTPIQGSAADILKIAMIQMDRRLKEENIQATMLLQVHDELVFEVPAAELEKLD 856

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +I+   MEK C   ++L VPL  +      W E
Sbjct: 857 KIVKEVMEK-C---VSLTVPLIADSNWGKTWYE 885



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 161/290 (55%), Gaps = 12/290 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG+S  +RAF+A    L R    +GL  NAI  F  M     +N   +   +H  V
Sbjct: 6   LLLVDGNSVAFRAFFALHNSLERFKNQNGLHTNAIYAFNTMF----ENVMAKEEPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRN +Y DYKA R K P+    Q+P ++   +  G+   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRNAMYEDYKAGRAKTPDEFREQMPYIKELLEGLGVKHYELANYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
                 KE + V I+S D+DL QL + T  +  TVK     E    E++ +K+ G+ P++
Sbjct: 122 LATKVPKEEYDVVILSGDRDLTQLATDTIKVDITVKGVSDIESCTPEYMFEKYDGLCPQQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+  +G KTA  LL+EYG++E +  +   +K  K +EN++   E
Sbjct: 182 IIDIKGLAGDASDNIPGVTKVGEKTAIKLLKEYGSVEGVYNHIDEMKTSKLKENLIRDKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            A LS++L  + TD P+ + ++ L+    N  +L+ F + + F + + ++
Sbjct: 242 KAFLSKQLATIDTDAPVNVEIDQLVYHGKNLDKLVPFYREMNFKQFLGKL 291


>gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
 gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
          Length = 911

 Score =  343 bits (881), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 200/531 (37%), Positives = 318/531 (59%), Gaps = 16/531 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S ++K F+ +   K   N K   ++L+R G+ +   + D +L+SY+LD+  + + +A++A
Sbjct: 390 SVVRKLFKGD-LPKYVFNAKELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLA 448

Query: 510 QKWLSY--TRKEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            ++  +  +  E+  S  K  IP +   +  +  H    ++ I +L      KL   +  
Sbjct: 449 NRFNVFLESDAEVYGSGVKFKIPEN---NETLFSHMANKASTISKLHDPSMKKLSDHQQA 505

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +Y +++ P+  V++ MEI GI++DQ  LK++  E  + +  LE+ IY+ +G++FN++SP
Sbjct: 506 ELYRQIELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQEFNINSP 565

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQL D+LF  +K P   KTKTG + T A  LE++     P +  IL++RQL+K+ STY  
Sbjct: 566 KQLADLLFVHMKIPPIKKTKTG-YSTAANVLEEL-AEKYPFVGLILQYRQLAKLNSTYVK 623

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            L   +N    ++HT Y    T TGRL+S++PN+QNIP + + G++IR+AF+ S    ++
Sbjct: 624 GLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEI 683

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804
             +DYSQIELR+LAH+     L + FE+  DIH   A  IFG++  +K++   RR AK +
Sbjct: 684 FGSDYSQIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAV 743

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS F LA +L I R E  + I+ YFH FP +  +I+       + GYVETI  
Sbjct: 744 NFGIVYGISDFGLAQRLGISRIEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQ 803

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I+S   ++R+  ER A N PIQGSAADI + AMI + ++L+D+ L  KMLLQ+
Sbjct: 804 RRRYLPDIHSKNFNLRSFAERTATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQV 863

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           HDEL+FE P++EI    +++   M+ A    + L VPL+V      NW +E
Sbjct: 864 HDELIFEAPKQEIDILEELVPKVMDSA----VKLNVPLRVEAHHGVNWYDE 910



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 106/286 (37%), Positives = 161/286 (56%), Gaps = 16/286 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R   H GL  NA+  F N   +++     E +   +A+
Sbjct: 24  LLLIDGNSLAFRAFYAMYNQLDRMVAHTGLHTNALVAFNNFFDQVV-----EKMNPDYAL 78

Query: 64  IF---DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           +       A TFR +I+ DYK +R   P  L  Q P +R      GI + E+ GFEADDI
Sbjct: 79  VAWDAGKGATTFRAKIFDDYKGDRQTTPPELSEQFPYLRKMVDLHGIHSYELPGFEADDI 138

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-IP 175
           I TY+ +AEK G   TII+ D+DL QLV+    +  T K     ++   + + +KWG I 
Sbjct: 139 IGTYSKLAEKAGLKTTIITGDRDLTQLVTDNVSVNVTKKGVTELDRYTPKFLAEKWGGIT 198

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +++LTGD+ D+ PG+  +G KTA  LL E+G+L+ I  +   +K  K +ENIL 
Sbjct: 199 PSQVIEMKSLTGDTSDHYPGVTKVGEKTAIKLLNEFGSLDGIYQHIDSMKTSKLKENILN 258

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
             E+A  + +L  +RTD P+ + ++ LI +  N   LI F + L+F
Sbjct: 259 DKESAYRAHELATIRTDAPVELEMKELINQPINFQELIPFYEELDF 304


>gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10]
 gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10]
          Length = 896

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 206/532 (38%), Positives = 327/532 (61%), Gaps = 20/532 (3%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIAS 507
           +++ L++ FE++   K GH++K     L  +GI +     D  + +Y+L+  RS++ I+ 
Sbjct: 373 VVNELREIFESKDIEKYGHDLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTYTISE 432

Query: 508 IAQKWL--SYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           +++  L  S T  EIL  K  K       +S S+V   A+   N I  L   LRP +   
Sbjct: 433 LSEDKLKQSITPVEILYDKHGKRLEQGQDVSSSEVCAAAV---NAIYGLTQKLRPIIRDN 489

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
               +Y +++ P+++V++ ME+ G ++D + LK  S E+   L+ LE  IY  +GE FN+
Sbjct: 490 GQDELYYKIELPLVEVLANMELRGFKVDVENLKAYSKELDSRLVILENEIYMQAGETFNI 549

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG ILF KL  P G KTKTG + T+A+ LEQ++   + I++ ILE+RQL K+KST
Sbjct: 550 NSPKQLGVILFEKLGLPVGKKTKTG-YSTSAEVLEQLSY-KHEIVERILEYRQLMKLKST 607

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           YAD L + + ++  ++H+ ++   T TGR++S EPNLQNIP+K ++G+KIR+ FI  PT 
Sbjct: 608 YADGLLS-VLEQDGKIHSNFNQTVTATGRISSTEPNLQNIPVKLEMGRKIRKVFI--PTN 664

Query: 744 K---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
               L+ ADYSQIELR+LAHI     + + F N+ DIH   A+++FG+  E+VS  MR  
Sbjct: 665 SDYVLLDADYSQIELRVLAHITGDPNMIEAFINNEDIHTTTASKVFGIPPEEVSSLMRSR 724

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +NF I+YGI  F L+  + + + EA  YI  Y  ++  + EY+  T    ++ G+V 
Sbjct: 725 AKAVNFGIVYGIGDFSLSKDIGVTKKEARKYIDDYLDKYSKVKEYMSDTVEKGKEFGFVT 784

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T++ RR +  E+ S   ++R+  ER A+N PIQGSAADI + +M+ V+  L+  KL +K+
Sbjct: 785 TLYNRRRYLPELKSSNFNMRSFGERVAMNTPIQGSAADIIKISMVKVYTELKKRKLKSKL 844

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +LQ+HDEL+ E  + E+   S+++   ME A    + L+VPL V++K  ++W
Sbjct: 845 ILQVHDELIVETEKSELEEVSKLLKDCMENA----VQLKVPLTVDVKHGDSW 892



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 164/301 (54%), Gaps = 20/301 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRK-----HDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  E+ + +VDG+S + RAFY    LSR       +GL  NA+ GF N+L K LQ+    
Sbjct: 1   MNSEDKILVVDGNSILNRAFYG---LSRAAMLTTSEGLYTNAVFGFINILSKHLQDEN-- 55

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               +  V FD  A TFR++ Y  YKA R  +P  L  Q+P+++    A  I  +E++GF
Sbjct: 56  --PKYVCVAFDLKAPTFRHKEYDQYKAQRKGMPNELAVQVPIIKQVLDAMNIARVEVEGF 113

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHV 168
           EADDI+ T +  AEK+G    +++ D+D +QL S       P T    T  +E  D E V
Sbjct: 114 EADDILGTVSSYAEKQGMKTILLTGDRDSLQLASNYTRIKLPVTRANKTETDE-YDYEKV 172

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           I+K+G+ P +++ ++ L GD+ DNIPG+PGIG KTA  L++++ +LE +  N  ++ +K 
Sbjct: 173 IEKYGVTPGQLIDVKGLMGDTSDNIPGVPGIGEKTALALIKKFNSLEELYENIDKVDKKG 232

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            RE +    E A + ++L  +   VP    L      + +  +L S  K LEF  LI + 
Sbjct: 233 VREKLENNKELAFMCKRLATIYRKVPGVENLNDFARLEIDKEKLYSIFKRLEFKTLIEKF 292

Query: 289 A 289
            
Sbjct: 293 G 293


>gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603]
 gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603]
          Length = 876

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 209/531 (39%), Positives = 310/531 (58%), Gaps = 21/531 (3%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508
            S L  + EN +  K  ++ K   +V HR  I ++  + D+ML SY++D  R+  D+ S+
Sbjct: 355 FSDLVNWLENPNTAKTVYDAKKTYVVAHRLDIDIQNIQFDVMLSSYIIDPSRTIDDVNSV 414

Query: 509 ----AQKWLSYTRKEILKSRKSSIPIDKISDSQVQE--HAIENSNVILQLWLLLRPKLIV 562
                Q ++        K +K  IP D+I +  V     A+  S   +Q  L    +   
Sbjct: 415 VSLYGQHYVQDNVAIYGKGKKHHIPEDEILNKHVASIIEAVSASKSEMQNQL---KEYNQ 471

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           E LL     L+ P+ +++S+ME  GI  D + L+ +  EI + L  L +NI++ +GE+FN
Sbjct: 472 ESLL---ADLELPLAEILSEMEEIGIYTDVNDLQHMEKEIQEKLDVLIKNIHEAAGEEFN 528

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G +PII  ILE+RQLSK++S
Sbjct: 529 INSPKQLGVVLFETLELPVIKKTKTG-YSTAVDVLEQLQ-GQHPIIDYILEYRQLSKLQS 586

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY + L   I++   R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF    T
Sbjct: 587 TYVEGLQKVISE-DNRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPTST 645

Query: 743 KKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             +I SADYSQIELR+LAHI +   + + F N  DIH   A ++F V  ++V   MRR A
Sbjct: 646 DSVILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVGADEVDSLMRRQA 705

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +   +VET
Sbjct: 706 KAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQDFVET 765

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +  RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+  +K ++  K   K+L
Sbjct: 766 LLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFNKEVQHTKYHAKLL 825

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+FEVP++E+ + SQ +   ME A    + L VPLKV       W
Sbjct: 826 LQVHDELIFEVPKDEVESFSQFVEDIMESA----LELDVPLKVESSYGATW 872



 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 108/291 (37%), Positives = 163/291 (56%), Gaps = 13/291 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEQPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SNEADKAGFETIIITGDRDLTQLATDHVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  N + +  KK +E +    +
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFNTVEGVYDNINSVSGKKLKEKLENSKD 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEFTKLINRV 288
            A +S+ L  +  + PI + LE   +E D +    I   K LEF +L+  +
Sbjct: 236 DALMSKDLATINVESPIEVNLEDTKMEADIDETEKIELFKKLEFNQLLAEI 286


>gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 876

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 206/529 (38%), Positives = 305/529 (57%), Gaps = 29/529 (5%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514
           + EN+   KI ++ K   +V HR  I+++    D+ML SY++D  R+  D+ S+   +  
Sbjct: 361 WLENDKTEKIVYDAKKSYIVAHRLDIAIKHIVFDVMLASYIIDPSRTIDDVNSVVSYFDQ 420

Query: 515 YTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
           +  KE +    K +K  +P D+I D  V          I++     +PK+  E  L  Y 
Sbjct: 421 HYVKESIEVFGKGKKRHVPEDEILDHHV--------GTIIEAINKTKPKM--EAQLEEYN 470

Query: 571 R------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +      L+ P+  ++S+ME TGI      L+++  EI   L  L  NIY+ +GE FN++
Sbjct: 471 QTNLLDDLELPLARILSEMEETGIYTVATDLQEMEKEIQAKLDVLINNIYNAAGESFNIN 530

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G +PII  ILE+R LSK++STY
Sbjct: 531 SPKQLGVVLFETLELPVIKKTKTG-YSTAVDVLEQLQ-GQHPIIDYILEYRTLSKLQSTY 588

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            + L   I++   R+HT ++     TGRL+S++PNLQNIPI+ + G++IR+AF S     
Sbjct: 589 VEGLQKVISE-DNRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRRIRKAFKSSDDNN 647

Query: 745 LI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           +I SADYSQIELR+LAHI +   + Q F N  DIH   A ++F V  ++V   MRR AK 
Sbjct: 648 VIFSADYSQIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPDEVDSLMRRQAKA 707

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+E      +  GYVET+ 
Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKQAKQFIDDYLDSFPGVKQYMEDIVKDCKAQGYVETLL 767

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I S   ++R   ER A+N PIQGSAADI + AM++    ++      ++LLQ
Sbjct: 768 HRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVNFVNEVKHTDFHAQLLLQ 827

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+FE+P++E+   S+ I   M+ A    + L VPLKV       W
Sbjct: 828 VHDELIFELPKDEVEAFSEFIEEIMDNA----LALDVPLKVETSHGKTW 872



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 173/341 (50%), Gaps = 31/341 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLL  K  G+  NA+ GF  +L K++    KE   +HF V 
Sbjct: 2   NKLILIDGNSLSFRAFYALPLLQNKA-GIHTNAVYGFAMLLEKII----KEEQPTHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P VR    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEQYSEYKGGRQKTPPELSEQFPYVRQLLDAYQIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A  E F   I++ D+DL QL +    +Y T K+   D++H   ++      G+ P +
Sbjct: 117 SKQANAEKFETIIVTGDRDLTQLATDDVTIYYT-KKGVTDVDHYTPEFIAEKYDGLVPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL+++  +EN+  +   +  KK +E +     
Sbjct: 176 IIDMKGLMGDASDNIPGVAGVGEKTAIKLLKKFSTVENVYNHIEEVSGKKLKEKLENSKS 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S++L  +  D PI + L    L E  +    I   K LEF +L+++V         
Sbjct: 236 DALMSKELATINCDSPIEVTLADTKLPESPDSTAKIDIFKKLEFKQLLDQV--------- 286

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
                  D+  T      +E EI  D       F+ LS+ T
Sbjct: 287 -------DVEGTHTSAEELELEITSD--FSNVDFNELSEAT 318


>gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
 gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
          Length = 740

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 190/493 (38%), Positives = 303/493 (61%), Gaps = 13/493 (2%)

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQVQEH 541
           R F+D ++ +Y+++  ++ ++++ +A+++L  S  +K  L  +KS   I +  D  V ++
Sbjct: 257 RCFDD-LIAAYLVNPNKNDYEVSDVAKEYLGLSLEKKIDLFGKKS---IREADDKSVVQY 312

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A + + V  +   L+  KL   ++L ++  ++ P+  V+  ME  GI   +D LK    +
Sbjct: 313 ACKCAFVCFKAEPLICKKLEKLQMLDLFYNIEMPLSYVLYSMEKEGIIARRDELKAYGDK 372

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +   +  LE++IY+ +G +FN++SPKQLG+ILF +L  P+  KTK+G + T A  LE++ 
Sbjct: 373 LQIRISELEKSIYEAAGVEFNINSPKQLGEILFERLGLPAEKKTKSG-YSTAADVLEKL- 430

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D PI+ +ILE+R L+K+KSTYAD L  +I +   R+HT ++   T TGR++S EPNLQ
Sbjct: 431 APDYPIVADILEYRGLAKLKSTYADGLAAYI-EEDGRIHTSFNQTITATGRISSTEPNLQ 489

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T+LG+ IR+ F+         ADYSQIELRILAH+++   L   +    DIH + 
Sbjct: 490 NIPMRTELGRLIRKVFVPKEDHVFADADYSQIELRILAHMSEDQELIAAYHEGKDIHGIT 549

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+++F V  E+V+P  RR+AK +NF I+YGIS F L+  L I   EA +Y+ +YF  +PG
Sbjct: 550 ASKVFHVPFEEVTPLQRRNAKAVNFGIVYGISSFGLSQDLSISVKEAKEYMDKYFETYPG 609

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y E+     ++ GY  T+FGRR    E+ +    +R   ER A+NAPIQG+AADI +
Sbjct: 610 VKAYQERVIADAKEKGYSLTMFGRRRPIPELKASNYMMRQFGERVAMNAPIQGTAADIMK 669

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V+  L+  KL +K++LQIHDELV E  ++E    + ++   ME+A     +L VP
Sbjct: 670 IAMINVYFRLKKEKLVSKLILQIHDELVIETLKDEEEKVTALLTQEMERAA----DLSVP 725

Query: 962 LKVNIKVSNNWQE 974
           L        +W E
Sbjct: 726 LLAECHSGTDWYE 738


>gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
 gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
          Length = 883

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 203/541 (37%), Positives = 314/541 (58%), Gaps = 16/541 (2%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG 499
           GK  L K  L  L   FEN       H++KYD  +L  YGIS+     D +L SY+L   
Sbjct: 351 GKLGLEK-ALKKLAPLFENSRIGFYAHHLKYDLHILKNYGISLANISFDTILASYILTPH 409

Query: 500 RSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
              H + ++  +    T+    +++   K+ I + ++   +V  +  E+ +   +L  + 
Sbjct: 410 LRQHSLDALTLEHFGKTKIPTSDLIGKGKNQITMLEVPIEKVCAYCCEDVDYTYRLKQIF 469

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
             +L   KL  +   L+ P++ V+S+ME  GI +D  +LK +   ++ +L  LE  I+ +
Sbjct: 470 ASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTLEKAVNTDLQRLENEIHAI 529

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           + E FNL SPKQL  ILF K+K P   KT TG + T+A+ LE +   +  I K +LE+R 
Sbjct: 530 ADEPFNLKSPKQLSGILFEKMKIPPPKKTATG-YSTSAEVLETLQ-NEYAIAKKMLEFRS 587

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L K++S+Y ++LP  IN +T R+H  ++ +   TGRL+  +PNLQ IPI+T LG+++R+A
Sbjct: 588 LEKLRSSYIETLPKEINPKTGRIHPTFNQSVAATGRLSCQDPNLQQIPIRTPLGREVRKA 647

Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           F   P K+    +SADYSQIELR+LAH ++   L   FEN+ DIH   AA +  + +E+V
Sbjct: 648 F--RPEKQGWSYLSADYSQIELRLLAHFSEDPTLISAFENNEDIHTHTAATVLNIPLEQV 705

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           + + RR AK +NF I+YG   + L+ +L I   EA+ +IK YF R+  + +++E  K   
Sbjct: 706 TKEQRRQAKAVNFGILYGQQAWGLSKELGISLEEASAFIKTYFQRYQRVKDFVESCKEKT 765

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           R+ G   TI GR     EI+S    IR   ER A+N P+QG+AAD+ ++AMI + + L  
Sbjct: 766 RKTGRAMTIIGRERPIPEIDSKNPQIRGAAERLAVNTPLQGTAADLIKKAMIVIDEKLMR 825

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +    M+LQIHDEL+FE+P+ EIT   Q+++ SME        LRVPL V++ +  NW+
Sbjct: 826 GQHLGFMILQIHDELIFEIPDFEITAIEQLVISSMEGV----YQLRVPLTVDVSIGKNWK 881

Query: 974 E 974
           E
Sbjct: 882 E 882



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/261 (36%), Positives = 149/261 (57%), Gaps = 10/261 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LF++D S ++YR+++A   L+    G   NA+ GF   L KL+++   +    H   +FD
Sbjct: 5   LFIIDASGYLYRSYHAIQNLTNAQ-GESTNALYGFIRSLLKLIKDFEPK----HMVAVFD 59

Query: 67  YPAVTFRNE-IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P  T R + +YP+YKANR  +PE L  Q+   +      GIP + +   EADD + +  
Sbjct: 60  GPKGTERRKTLYPNYKANRKAMPEDLRYQIEWAQEFCDLLGIPKLVVPQVEADDTMGSVA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184
             AE++G  V + ++DKDL QLVS    + +T K   I   + V + +G+ P +M+   A
Sbjct: 120 KWAEQKGTEVYLCTSDKDLCQLVSEKIFVLNTHKNNLIMGSKEVKESFGVSPSQMIDYLA 179

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + GD+ DN+PGIPG G KTAA +L+E G L+++L +  ++K KK +E +   A TA+LS+
Sbjct: 180 IVGDASDNVPGIPGFGAKTAAKVLEEIGTLDHLLSHPEKLKGKK-QEAVRTSAGTAKLSQ 238

Query: 245 KLVMLRTDVPITIPLEHLILE 265
           KLV +  D  I  P E    E
Sbjct: 239 KLVTI--DTSIDFPKEGEFFE 257


>gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1]
 gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1]
          Length = 903

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 199/531 (37%), Positives = 317/531 (59%), Gaps = 16/531 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S ++K F+ +   K   N K   ++L+R G+ +   + D +L+SY+LD+  + + +A++A
Sbjct: 382 SVVRKLFKGD-LPKYVFNAKELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLA 440

Query: 510 QKWLSY--TRKEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            ++  +  +  E+  S  K  IP +   +  +  H    ++ I +L      KL   +  
Sbjct: 441 NRFNVFLESDAEVYGSGVKFKIPEN---NETLFSHMANKASTISKLHDPSMKKLSDHQQA 497

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +Y +++ P+  V++ MEI GI++DQ  LK++  E  + +  LE+ IY+ +G++FN++SP
Sbjct: 498 ELYRQIELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQEFNINSP 557

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQL D+LF  +K P   KTKTG + T A  LE++     P +  IL++RQL+K+ STY  
Sbjct: 558 KQLADLLFAHMKIPPIKKTKTG-YSTAANVLEEL-AEKYPFVGLILQYRQLAKLNSTYVK 615

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            L   +N    ++HT Y    T TGRL+S++PN+QNIP + + G++IR+AF+ S    ++
Sbjct: 616 GLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEI 675

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804
             +DYSQIELR+LAH+     L + FE+  DIH   A  IFG++  +K++   RR AK +
Sbjct: 676 FGSDYSQIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAV 735

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS F LA +L   R E  + I+ YFH FP +  +I+       + GYVETI  
Sbjct: 736 NFGIVYGISDFGLAQRLGTSRIEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQ 795

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I+S   ++R+  ER A N PIQGSAADI + AMI + ++L+D+ L  KMLLQ+
Sbjct: 796 RRRYLPDIHSKNFNLRSFAERTATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQV 855

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           HDEL+FE P++EI    +++   M+ A    + L VPL+V      NW +E
Sbjct: 856 HDELIFEAPKQEIDILEELVPKVMDSA----VKLNVPLRVEAHHGVNWYDE 902



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 105/286 (36%), Positives = 161/286 (56%), Gaps = 16/286 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R   H GL  NA+  F N   +++     E +   +A+
Sbjct: 16  LLLIDGNSLAFRAFYAMYNQLDRMVAHTGLHTNALVAFNNFFDQVV-----EKMNPDYAL 70

Query: 64  IF---DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           +       A TFR +I+ DYK +R   P  L  Q P +R      GI + E+ GFEADDI
Sbjct: 71  VAWDAGKGATTFRAKIFDDYKGDRQTTPPELSEQFPYLRKMVDLHGIHSYELPGFEADDI 130

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-IP 175
           I TY+ +AEK G   TII+ D+DL QLV+    +  T K     ++   + + +KWG I 
Sbjct: 131 IGTYSKLAEKAGLKTTIITGDRDLTQLVTDNVSVNVTKKGVTELDRYTPKFLAEKWGGIT 190

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +++LTGD+ D+ PG+  +G KTA  LL E+G+L+ I  +   +K  K +EN+L 
Sbjct: 191 PSQVIEMKSLTGDTSDHYPGVTKVGLKTAIKLLNEFGSLDGIYQHIDSMKTSKLKENLLN 250

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
             E+A  + +L  +RTD P+ + ++ LI +  N   LI F + L+F
Sbjct: 251 DKESAYRAHELATIRTDAPVELEMKELINQPINFQELIPFYEELDF 296


>gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
 gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
          Length = 896

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 208/536 (38%), Positives = 327/536 (61%), Gaps = 20/536 (3%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDI 505
           +E L+ L++ FE++   K GH++K     L  +GI +     D  + +Y+L+  RS++ I
Sbjct: 371 QEALNELREIFESKDIEKYGHDLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTYTI 430

Query: 506 ASIAQKWL--SYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           + + +  L  S T  EIL  K  K       IS S+V   A+   N I  L   LRP + 
Sbjct: 431 SELYEDKLKQSITPVEILYDKHGKRLQQEQDISSSEVCAAAV---NAIYVLIQKLRPIIR 487

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                 +Y  ++ P+++V++ ME+ G ++D + L+  S E+   L+ LE  IY  +GE F
Sbjct: 488 DNGQDELYYEIELPLVEVLADMELRGFKVDVEGLQAYSKEMDSRLVILENEIYMQAGETF 547

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++SPKQLG ILF KL  P G KTKTG + T A+ LEQ++   + I++ ILE+RQL K+K
Sbjct: 548 NINSPKQLGVILFEKLGLPVGKKTKTG-YSTNAEVLEQLSY-KHEIVERILEYRQLMKLK 605

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STYAD L + + ++  ++H+ ++   T TGR++S EPNLQNIP+K ++G+KIR+ FI  P
Sbjct: 606 STYADGLLS-VLEQDGKIHSNFNQTVTATGRISSTEPNLQNIPVKLEMGRKIRKVFI--P 662

Query: 742 TKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           T +   L+ ADYSQIELR+LAHI   + + + F  + DIH   A+++FG+  E+VS  MR
Sbjct: 663 TNQDYVLLDADYSQIELRVLAHITDDSNMIEAFLKNEDIHTTTASKVFGIPPEEVSSLMR 722

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
             AK +NF I+YGI  F L+  + + + EA  YI  Y  ++  + EY+  T    ++ G+
Sbjct: 723 SRAKAVNFGIVYGIGDFSLSKDIGVTKKEARQYIDDYLDKYSKVKEYMSDTVEKGKEFGF 782

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V T++ RR +  E+ S   ++R+  ER A+N PIQGSAADI + +M+ V+  L+  KL +
Sbjct: 783 VTTLYNRRRYLPELKSSNFNMRSFGERVAMNTPIQGSAADIIKISMVKVYNELKKRKLKS 842

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K++LQ+HDEL+ E  + E+   S+++   ME A    + L+VPL V++K  ++W E
Sbjct: 843 KLILQVHDELIVETEKSELEEVSKLLKDCMENA----VQLKVPLTVDVKHGDSWYE 894



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 165/300 (55%), Gaps = 18/300 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRK-----HDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  E+ + +VDG+S + RAFY    LSR       +GL  NA+ GF N+L K LQ+    
Sbjct: 1   MNSEDKILVVDGNSILNRAFYG---LSRAAMLTTSEGLYTNAVFGFINILSKYLQDEN-- 55

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               +  V FD  A TFR++ Y  YKA R  +P  L  Q+P+++    A  I  +E++GF
Sbjct: 56  --PKYVCVAFDLKAPTFRHKEYDQYKAQRKGMPNELAVQVPIIKQVLDAMNIARVEVEGF 113

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEHVI 169
           EADDI+ T +  AEK+G    +++ D+D +QL S  T +       +  + ++ D E V+
Sbjct: 114 EADDILGTVSSYAEKQGLKTILLTGDRDSLQLASGHTRIKLPVTRGNKTETDEYDYEKVV 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K+G+ P +++ ++ L GD+ DNIPG+PG+G KTA  L+Q++ +LE +  N  ++++K  
Sbjct: 174 EKYGVTPGQLIDVKGLMGDTSDNIPGVPGVGEKTALNLIQKFNSLEELYENIDKVEKKGV 233

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           RE +    E A +S++L  +   VP    L      + +   L    K LEF  LI +  
Sbjct: 234 REKLENNKELAFMSKRLATIYRKVPGVEDLSSFARTEADKEALYGIFKRLEFKTLIEKFG 293


>gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102]
 gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102]
          Length = 981

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 216/636 (33%), Positives = 351/636 (55%), Gaps = 52/636 (8%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDT----MDAFHSKPIAIAISTLDQKDDTSFKVET 426
           I +T  +Q  VQ+L T       +  DT    ++ F ++ + I +   ++ D  ++    
Sbjct: 364 IQDTAALQGLVQRLMTCTDTGSPVALDTETTDLNPFKAELVGIGVCWGEELDALAY---- 419

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
             I L  + S DS       + +++ L  +  +E   K   N K+D+L+L R+G+++ G 
Sbjct: 420 --IPLGHNGSADSQPVQLPLETVVTALAPWLGSEDHPKALQNAKFDRLILMRHGLALDGV 477

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRK---SSIPIDKISDSQVQE 540
             D +L  Y+ D+  + H +  +A++   +  T    L  +K   + +P++  S     +
Sbjct: 478 VIDTLLADYLRDAA-AKHGLELMAEREFGFQPTAYSDLVGKKQTFADVPLEAAS-----Q 531

Query: 541 HAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           +   + +V  +L LLLR +L  +  ++L + E++++P+  V+++ME TGI+ID   L+++
Sbjct: 532 YCAMDVHVTRRLALLLRNQLAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPYLQEL 591

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQD 656
           S E+   L  LE    + +G  FNL+SPKQLG++LF  L        +TKTG + T A  
Sbjct: 592 STEMGTTLERLETEAKEAAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTG-YSTDATV 650

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D+P++  +LE R LSK+KSTY D+LP  +   T RVHT ++ A T TGRL+S 
Sbjct: 651 LEKLG-DDHPVVPLVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFNQAVTATGRLSSS 709

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIP++T+  ++IR+AF+      L+SADYSQIELRIL H++    L + + +  D
Sbjct: 710 NPNLQNIPVRTEYSRRIRKAFLPQAGWTLLSADYSQIELRILTHLSGEEVLQEAYRSGDD 769

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H + A  +   + ++VS   RR  KTINF +IYG+   R A +  + +SEA D++ +Y 
Sbjct: 770 VHALTARLLL--DKDEVSADERRLGKTINFGVIYGMGAQRFARETGVSQSEAKDFLSKYK 827

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYD-------------EIN---SPKSS 878
            R+P +  ++E  +      GYVETI GRR   H+D             EI+   + +  
Sbjct: 828 QRYPKVFAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLGKEPLEIDLDVARRGG 887

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +     RAA NAPIQGS+ADI + AM+ +  +L    L  ++LLQ+HDELV EV  + + 
Sbjct: 888 MEAQQLRAAANAPIQGSSADIIKVAMVQLQAALTSQGLPARLLLQVHDELVLEVEPDALE 947

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           T   ++V +ME A    + L VPL     V  NW E
Sbjct: 948 TTRDMVVRTMENA----VKLTVPLVAETGVGANWME 979



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 148/315 (46%), Gaps = 43/315 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R+FYA           +DG P +   GF   L    ++ + E +A    
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATNDGRPTSVTYGFLKSLLDTGKSLKPEGVA---- 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDII 121
           + FD    TFR++   +YKA+R   PE+    L  L  +      +P     G+EADD++
Sbjct: 66  IAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLDQLQEILRHKLDLPLCMAPGYEADDVL 125

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIKK 171
            T    A  +G+ V I+S D+DL QLV        LY              I  E V+ K
Sbjct: 126 GTLANRAADDGWGVRILSGDRDLFQLVDDNRDIAVLYMGGGPYAKNSGPTLIREEGVLGK 185

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----------A 221
            G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL++  +L+ +             A
Sbjct: 186 LGVMPNKVVDLKALTGDSSDNIPGVRGVGPKTAISLLKDNNDLDAVYATLEELEAEGPKA 245

Query: 222 SR------IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLIS 274
           SR      +K K R +      + A LSRKL  +  D+P  +P E  L L   N   L S
Sbjct: 246 SRGAIKGALKGKLRNDK-----DNAYLSRKLAEILVDIP--LPQEPSLPLSTVNAEGLSS 298

Query: 275 FLKALEFTKLINRVA 289
            L+ LE   L+ +V 
Sbjct: 299 CLEDLELNSLLRQVG 313


>gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684]
 gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684]
          Length = 884

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/458 (38%), Positives = 280/458 (61%), Gaps = 11/458 (2%)

Query: 520 ILKSRKSSIPIDKISD-----SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
           +L+  + S P+D++++     + V++ A  ++ ++  L    RP+L   +LL +++ ++ 
Sbjct: 429 LLEPARRSYPLDELTEERGIGTDVEDAAAADAILVHALTAAQRPQLEERELLPLFDDVEL 488

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P++ V+  ME  G+++D +LL  +   +    ++LE  I++L+GE+F + SP+QLG ILF
Sbjct: 489 PLVRVLRAMETAGLRLDTELLATIRTRVMDEAVALEREIWELTGEEFMIGSPQQLGQILF 548

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            KL      + KTG + T A+ L+ I  G++P+I+ I  WR+L+K+ STY D+LP  I+ 
Sbjct: 549 EKLGLSRKRRGKTG-YSTDARVLQAIR-GEHPVIEKIERWRELTKLASTYLDALPLLISP 606

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
              R+HT ++  +  TGRL+S  PNLQNIPI+T LG++IR  F++ P   LISADYSQ+E
Sbjct: 607 EDHRLHTTFNQVTAATGRLSSTNPNLQNIPIRTPLGREIRACFVAEPGNVLISADYSQVE 666

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LAHIA    L ++F    D+H   AA I G++ E++    R  AK +N+ I+YG+S 
Sbjct: 667 LRVLAHIAGEEVLKEIFRRGEDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGIVYGLSA 726

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F LA +L+IPR EA ++I RY   FP +  +I  T       GYV T+ GRR    E+ +
Sbjct: 727 FGLADRLQIPREEAQEFIDRYLDGFPAVQAFIRTTIEQATDQGYVTTLMGRRRQIPELRA 786

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               +R + ER A+N  IQG+AAD+ + AM++  ++L    L T+++LQIHDEL+FE P 
Sbjct: 787 RNYQMRQLGERLAVNTVIQGTAADVIKLAMVNADRALHASGLRTRLILQIHDELLFEGPA 846

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EE   A  ++V  M  A    + L  PL V+  +  NW
Sbjct: 847 EEAEQARDLVVPQMVDA----LELDPPLVVDAGIGPNW 880



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 170/305 (55%), Gaps = 12/305 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLL-QNSRKESIASHF 61
           K + LFL+DG+S  YRAF+A P       G P NAI GF +ML K+L +   + +I    
Sbjct: 24  KPDELFLIDGNSLAYRAFFALPESIATSTGFPTNAIFGFASMLVKILTEYGPRATI---- 79

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V +D    + R E+YP+YKA R   P++   Q P +    ++FG   + + G+EADD+I
Sbjct: 80  -VAWDR-GHSGRREVYPEYKAQRSSRPDLFKQQWPHLEPLVESFGYQNVSLDGYEADDVI 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPE 177
           AT    A+  G  V +++ D+D  QLV     +  T     +    D + VI ++GIPPE
Sbjct: 138 ATLAERAKAAGIPVMVVTGDRDSFQLVDEGVQIMATSRGITETRTYDRQGVIDRYGIPPE 197

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            +     L GD+ DNIPG+PGIG KTAA LL ++G+LE +L NA  I+ +KRREN++E+A
Sbjct: 198 LVPDFIGLKGDTSDNIPGVPGIGDKTAAQLLNDFGDLEGVLANAHTIRARKRRENLIEHA 257

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY-DCDA 296
           E AR+S++L  +R D+ + I +  +   + +  RL    +  E    + R+     D D 
Sbjct: 258 EDARVSKQLATMRRDLEVAIDVAAVHGAEPDRSRLRETFREFELRDPLRRLEEALGDGDE 317

Query: 297 ANIEP 301
           A   P
Sbjct: 318 AAPRP 322


>gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
 gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
          Length = 889

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 210/529 (39%), Positives = 312/529 (58%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
           LK F E    LK+ ++ K  K++L+R+G+ ++    D  L  Y+L S   +++I++IA  
Sbjct: 371 LKDFLEKTP-LKV-YDFKKAKVLLNRFGLDLQAPAFDSRLAKYLL-STVENNEISTIANL 427

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q +L        K  K +IP          EH      V+++   +L  KL     L 
Sbjct: 428 YGQTYLVDDETFYGKGVKKAIP----ERETFLEHLARKVAVLVETEPVLLEKLCENGQLD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+GE+FN++SPK
Sbjct: 484 LLYEMEQPLAFVLAKMEIAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG++LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY   
Sbjct: 544 QLGELLFEKLGLPIEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 603

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 604 LQDWI-LADGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F L+  L I R +A  YI  YF RFPGI  Y+++     R  GYVET+F R
Sbjct: 723 FGVVYGISDFGLSNNLGISRKDAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 782

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+H
Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+    +++  +ME+A    I L VPL  +      W E
Sbjct: 843 DEIVLEVPKSELAAIKKLVKQTMEEA----IQLSVPLIADENEGVTWYE 887



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/285 (40%), Positives = 154/285 (54%), Gaps = 11/285 (3%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L   K+D GL  NAI GF  ML  LL+  +     SH  V
Sbjct: 18  LLLIDGSSVAFRAFFALYQQLDRFKNDNGLHTNAIYGFHLMLNHLLERIQ----PSHILV 73

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 74  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 133

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AEKE F VTI+S DKDL+QL    T +  + K     E    +++++K GI P + 
Sbjct: 134 LGRLAEKESFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITPTQF 193

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDSMKASKMKENLVNDKEQ 253

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           A LS+ L  + T  PI I L+ L+    +   L  F   + F +L
Sbjct: 254 AFLSKTLATIDTKAPIEIGLDDLVYSGPDVENLGKFYDEMGFKQL 298


>gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27]
 gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27]
          Length = 877

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/487 (39%), Positives = 292/487 (59%), Gaps = 25/487 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L++Y+LD  R+++    + +++              S+P   I++  V    +    
Sbjct: 410 DMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIANGSVDVECVSMVK 453

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L +  +       E+L  +YE ++ P+I  +  ME  GI ID + L + +A   + L 
Sbjct: 454 ALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTARFKEELT 513

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            ++E IY+L+GE FN++SPKQLG ILF K+K P   KTKTG + T A+ L+ +   ++PI
Sbjct: 514 QVQEEIYELAGETFNINSPKQLGVILFEKMKLPIIKKTKTG-YSTDAEVLDMLRH-ESPI 571

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ IL +R ++K+ STY + L   IN +T R+HT ++   T TGRL+S +PNLQNIP++T
Sbjct: 572 VEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 631

Query: 728 DLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           + G++IR A   P T    L+SADYSQIELRILAH++    L + F    DIHR  AAE+
Sbjct: 632 EKGREIR-ALFYPGTGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEV 690

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
            G + ++V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+P + EY
Sbjct: 691 LGKSQDEVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEY 750

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI + AM 
Sbjct: 751 MDRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMN 810

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V + LE+    +++LLQ+HDELV EV   E+    +++  +M+      + L+VPL V+
Sbjct: 811 QVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSV----VELQVPLIVD 866

Query: 966 IKVSNNW 972
           +  + NW
Sbjct: 867 VHHAENW 873



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 200/363 (55%), Gaps = 29/363 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    E    + AV FD
Sbjct: 8   LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + + 
Sbjct: 63  KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                  AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++ +
Sbjct: 123 KFGAPDMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GDS DNIPG+PG+G KTA  L+ EYGNLE++  +   I  KK +E ++E  E A L
Sbjct: 183 KALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVENKELAFL 242

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA------ 296
           SR+L  ++TD+ ++  +E  + ++ +   +    + L FTKL  R+A    C+       
Sbjct: 243 SRELATIKTDMELSYEVEDFV-QNFHASEVQPLFETLGFTKLTPRIAQVMGCEEVALGDP 301

Query: 297 ----ANIEPVVLD---------INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
               A  E + LD          +  ++K +A+   +D  T  +T   + LS+  + + +
Sbjct: 302 GSLFAQQEEISLDDLADAKSLTADFYKDKTVAVHVILDGKTPFRTVTNAYLSNGDTIVKT 361

Query: 344 EQT 346
           + T
Sbjct: 362 DDT 364


>gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
 gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
          Length = 911

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 193/508 (37%), Positives = 307/508 (60%), Gaps = 15/508 (2%)

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSR-KSSIP 529
           ++L+R G+ +   + D +L+SY+LD+  + + +A++A ++  +  +  E+  S  K  IP
Sbjct: 412 VLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEVYGSGVKFKIP 471

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            +   +  +  H    ++ I +L      KL   +   +Y +++ P+  V++ MEI GI+
Sbjct: 472 EN---NETLFSHMANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEINGIK 528

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +DQ  LK++  E  + +  LE+ IY+ +G++FN++SPKQL D+LF  +K P   KTKTG 
Sbjct: 529 LDQAELKKLGQEFDQRIFELEKQIYEEAGQEFNINSPKQLADLLFAHMKIPPIKKTKTG- 587

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A  LE++     P +  IL++RQL+K+ STY   L   +N    ++HT Y    T 
Sbjct: 588 YSTAANVLEEL-AEKYPFVGLILQYRQLAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQ 646

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PN+QNIP + + G++IR+AF+ S    ++  +DYSQIELR+LAH+     L 
Sbjct: 647 TGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLK 706

Query: 769 QVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           + FE+  DIH   A  IFG++  +K++   RR AK +NF I+YGIS F LA +L   R E
Sbjct: 707 KAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGTSRIE 766

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
             + I+ YFH FP +  +I+       + GYVETI  RR +  +I+S   ++R+  ER A
Sbjct: 767 GKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAERTA 826

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
            N PIQGSAADI + AMI + ++L+D+ L  KMLLQ+HDEL+FE P++EI    +++   
Sbjct: 827 TNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEELVPKV 886

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEE 975
           M+ A    + L VPL+V      NW +E
Sbjct: 887 MDSA----VKLNVPLRVEAHHGVNWYDE 910



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/286 (36%), Positives = 161/286 (56%), Gaps = 16/286 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S  +RAFYA    L R   H GL  NA+  F N   +++     E +   +A+
Sbjct: 24  LLLIDGNSLAFRAFYAMYNQLDRMVAHTGLHTNALVAFNNFFDQVV-----EKMNPDYAL 78

Query: 64  IF---DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           +       A TFR +I+ DYK +R   P  L  Q P +R      GI + E+ GFEADDI
Sbjct: 79  VAWDAGKGATTFRAKIFDDYKGDRQTTPPELSEQFPYLRKMVDLHGIHSYELPGFEADDI 138

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-IP 175
           I TY+ +AEK G   TII+ D+DL QLV+    +  T K     ++   + + +KWG I 
Sbjct: 139 IGTYSKLAEKAGLKTTIITGDRDLTQLVTDNVSVNVTKKGVTELDRYTPKFLAEKWGGIT 198

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +++LTGD+ D+ PG+  +G KTA  LL E+G+L+ I  +   +K  K +EN+L 
Sbjct: 199 PSQVIEMKSLTGDTSDHYPGVTKVGLKTAIKLLNEFGSLDGIYQHIDSMKTSKLKENLLN 258

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
             E+A  + +L  +RTD P+ + ++ LI +  N   LI F + L+F
Sbjct: 259 DKESAYRAHELATIRTDAPVELEMKELINQPINFQELIPFYEELDF 304


>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
 gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
          Length = 919

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 178/485 (36%), Positives = 290/485 (59%), Gaps = 17/485 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ + +Y+L+   + +    ++ +W +  R E L+SR               E A   + 
Sbjct: 448 DLGVAAYLLNPEENDYGWPRLSARWGAVLRHE-LESRG--------------ETASGPAR 492

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           + L +  L   ++  + LL ++ RL+ P++ V++ ME +G+ ID    +    ++   L 
Sbjct: 493 LGLAMAQLFEQRMEKDGLLELFRRLEMPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQLD 552

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            L  ++Y+L+G +FN+ S +QLGD+LF  L  P+  KTK GQ  T+ Q LE++  G +P+
Sbjct: 553 QLTAHVYELAGTQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKL-AGQHPV 611

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           + +IL++R+L K++STY D LP  ++ +  R+HT ++  +T TGRL+S  PNLQNIP++ 
Sbjct: 612 VDSILQYRKLEKMRSTYLDPLPRLVDPQG-RIHTTFNQKATATGRLSSSNPNLQNIPVRG 670

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            LG+++R  FI+ P + L+SADYSQ+ELR+LAH+++   L + F N  DIH   AA ++ 
Sbjct: 671 PLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIHARTAALVYD 730

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           +  ++VSP  RR+AKTINF +IYG+   +LA +L+I  ++A D+I RYF R  G+ E+ E
Sbjct: 731 LPPDQVSPDQRRNAKTINFGLIYGMGAQKLAQELKISTTQAKDFIARYFERLQGLKEFYE 790

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             +   R++G+V T+ GRR    +INS       +  R AIN  IQGSAADI + AM++V
Sbjct: 791 GVEASARKHGFVTTLGGRRRLLPDINSASGQAAALARRQAINTVIQGSAADIIKLAMLAV 850

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            +     +L  ++LLQ+HDEL+ EVP +    A  ++   M+  C     L VPL V+  
Sbjct: 851 ARDERLRELDARLLLQVHDELLLEVPADAAEEAGALVARLMQDVCPAGKELSVPLLVDWG 910

Query: 968 VSNNW 972
             ++W
Sbjct: 911 TGHDW 915



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 134/247 (54%), Gaps = 14/247 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +FL+DGS+FIYR F+A   + R  DG P N++     +L ++L+  R      +FA + D
Sbjct: 14  VFLMDGSAFIYRGFFANRNMQRS-DGFPTNSLVVVSRVLLRILREERPR----YFAFVQD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+EI+P YKANR   PE L+ QL  ++   +A G+     QG EADD IA+   
Sbjct: 69  GKGPNFRHEIFPLYKANRDATPEDLVRQLDPIQRMVRALGLRLEVSQGCEADDCIASLAA 128

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKIDIE-HVIKKWGIPPEKMVCLQA 184
               E   V I+S DKDL Q + P   ++D   KEEK+  E     + G+ P +   +QA
Sbjct: 129 RFAGE-HPVIIVSGDKDLKQCLGPNVYMWDPASKEEKLVSEADFTAESGVTPGQWPDVQA 187

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI------LINASRIKQKKRRENILEYAE 238
           L GD+ DNIPG+PGIG KTA  +     +LE+I      L    + K ++  EN+  + +
Sbjct: 188 LIGDTSDNIPGVPGIGPKTARQIFSICPSLEDIRDHFVLLPPKLQAKLQEHLENMFIWRQ 247

Query: 239 TARLSRK 245
              LSR+
Sbjct: 248 LTTLSRE 254


>gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 193/544 (35%), Positives = 308/544 (56%), Gaps = 16/544 (2%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR 500
           +  L +  L+ L+ + E+    K+GH+ K   + L R G+++ G   D M+ S++++  +
Sbjct: 358 EGGLGEAGLAKLRPWLEDPKRYKLGHDCKASWVALRRKGVALAGIVGDTMIESFLVEPNK 417

Query: 501 S-SHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
              H +  + +++L  T   +K IL S K      ++    +          +   ++ +
Sbjct: 418 LIPHRLDQLTKEYLQRTIPPQKRILGSGKRLKRFSQLDAEALAPWCCTQVEAVAAAFVEI 477

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           R +L  E      E++  P+  V+ QME+ G+ ID + L ++S E  + L  LE+ I+++
Sbjct: 478 RERLDAEGHRDTLEQVSLPLSWVLGQMELDGVAIDSEDLGKMSEEFGERLAKLEKTIFEI 537

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG----DNPIIKNIL 672
           +G +FN++S KQLG +LF +L+ P   +TKTG + T A+ LE++        + I K +L
Sbjct: 538 AGREFNIASSKQLGAVLFDELELPVIKRTKTG-YSTNAEVLERLAGKTKHPKHTIAKYLL 596

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
           E R+L+K+ +TY D L   +N  + R+H  +   + ++GRL + EP+LQ  PIKT  G++
Sbjct: 597 EHRKLAKLINTYTDVLQAAVNPDSGRIHATFQQTAGVSGRLITTEPDLQRTPIKTPEGKR 656

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF--GVNI 790
           +R+AF++ P  KLISAD+SQIELR+LAH +    L + F   LD+H   AA++F  G   
Sbjct: 657 VRQAFVTRPGYKLISADWSQIELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEVGGGP 716

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           EKVS + R   K +NF+ IYG     L   L++PR +A  YI  YF  + G+ ++++ T 
Sbjct: 717 EKVSREQRGVGKLVNFATIYGQGATALGQILKVPRKQAQAYIDGYFAYYSGVRDWLDGTM 776

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
                +G+VET+ GRR +  E++S     R   ER A N PIQGSAADI + AM+ + + 
Sbjct: 777 AQANVDGFVETLLGRRRYIPELSSNNWQDRQAGERIAANTPIQGSAADICKLAMLGIDRQ 836

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L   KL T+MLLQIHDELVFE P  E+     I+   ME      + LRVPL V++ V +
Sbjct: 837 LRAQKLTTRMLLQIHDELVFEAPVAEVEAVVAIVRGQMESV----VELRVPLVVDVGVGD 892

Query: 971 NWQE 974
            W E
Sbjct: 893 TWAE 896



 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/286 (44%), Positives = 164/286 (57%), Gaps = 5/286 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L L+D SS IYRA+YA P      DGL  NAI GF  M  K+L   + E     
Sbjct: 1   MPTPERLILIDASSLIYRAYYAIPANFSTADGLHTNAIYGFATMFRKILSGRQPE----R 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD P  TFR E YP+YKA RP++   L  QLP V    +A   P + + G+EADDI
Sbjct: 57  GAVVFDAPGKTFREEQYPEYKAQRPRMDPELREQLPWVDKLVEAHRFPHLRVPGYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T T  A   G  V IIS DKD  QL+ PT  + DT+++   D E V KKWG+PP   +
Sbjct: 117 IGTLTRQAVDAGMEVYIISGDKDFAQLIGPTVRMIDTLRDVTFDAELVRKKWGVPPSLFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DNIPG+PGIG KTA  LL  YG+LE +L + S +K K+ +E + + AE A
Sbjct: 177 DYLALVGDKVDNIPGVPGIGPKTAKKLLDAYGDLEGVLTHTSELKGKQ-KERLEDNAEQA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           R+S+KL  + T V + + LE L L       L +  K LEF  L++
Sbjct: 236 RMSQKLATIDTQVELELGLEDLKLVPVAAAELNALYKRLEFYSLLS 281


>gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
 gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
          Length = 877

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 312/529 (58%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIA-- 509
           LK+F E    LK+ ++ K  K++L+R G++++    D  L  Y+L S   +++I++IA  
Sbjct: 359 LKEFLEKTP-LKV-YDFKKAKVLLNRLGLNLQAPAYDSRLAKYLL-STVENNEISTIANL 415

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q +L        K  K +IP       +  EH      V+++   +L  KL     L 
Sbjct: 416 YGQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 471

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+GE+FN++SPK
Sbjct: 472 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPK 531

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY   
Sbjct: 532 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 591

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 592 LQDWI-LDDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 650

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 651 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 710

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F L+  L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F R
Sbjct: 711 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 770

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+H
Sbjct: 771 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 830

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+     ++  +ME+A    I L VPL  +      W E
Sbjct: 831 DEIVLEVPKSELAAVKDLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        SH  V
Sbjct: 6   LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELPQYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K G+ P + 
Sbjct: 122 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPAQF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 182 IDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284
           A LS+ L  + T  PI I L+ L+    NGP    L  F   + F +L
Sbjct: 242 AFLSKTLATIETQAPIEIGLDDLV---YNGPDVENLGKFYDEMGFKQL 286


>gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
          Length = 878

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 184/489 (37%), Positives = 298/489 (60%), Gaps = 15/489 (3%)

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD--SQVQEHAIEN 545
           + +Y+L+  ++++D   I +++L      R+E++  +      D +++   +++      
Sbjct: 398 VAAYLLNPLKTAYDYEDIGKEYLGQIFPGRQEVVGKKGDK---DALAEKPEEMKRLGCFM 454

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           + V L +   L   L    +  +++ ++ P++  ++ ME  GIQ++ + L+    ++   
Sbjct: 455 AYVALAVKAPLEEALREAGMERIFQEIEMPLVFTLNSMEKEGIQVEGEALRVYGEQLQVR 514

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           +  LE+ I   +GE FN++SPKQLG ILF K+K P G KTKTG + T A  L+++    +
Sbjct: 515 IGELEKQICGQAGEDFNINSPKQLGAILFEKMKLPGGKKTKTG-YSTAADVLDKL-APKH 572

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           PI+++ILE+RQL+K+KSTYAD L  +I +   R+H+ +    T TGR++S EPNLQNIPI
Sbjct: 573 PIVRDILEYRQLTKLKSTYADGLAGYIGE-DGRIHSTFHQTITATGRISSTEPNLQNIPI 631

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           + +LG+ IR+ F+       + ADYSQIELR+LAH++    L Q +  + DIHR+ A+++
Sbjct: 632 RMELGRLIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLTASQV 691

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F    E+V+   RR+AK +NF I+YGIS F L+  L I R EAADYI+RYF  +P I  +
Sbjct: 692 FHTPFEEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAADYIERYFSTYPKIKGF 751

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++      +++GYV T+FGRR    E+ S     R+  ER A+N+PIQG+AADI + AM 
Sbjct: 752 LDGLVKKGKEDGYVTTMFGRRRPIPELKSSNFMQRSFGERIAMNSPIQGTAADIIKIAMN 811

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V+  L    L +K++LQ+HDEL+ E  EEE+   S+I++  M +A     +L V L+V+
Sbjct: 812 RVYSRLRQEGLRSKLILQVHDELLIETWEEELEQVSEILLEEMRQAA----SLDVALEVD 867

Query: 966 IKVSNNWQE 974
           +    NW E
Sbjct: 868 MHTGKNWYE 876



 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 168/291 (57%), Gaps = 13/291 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +G    A+ GF N+L+++L+  + +    + AV FD
Sbjct: 6   ILLIDGHSILNRAFYGLPDLTNS-EGKHTGAVYGFLNILFRILEEEKPQ----YLAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y  YK  R  +PE L  Q+PL++   +A  IP + ++G+EADD++ T   
Sbjct: 61  LHAPTFRHQMYEAYKGTRKAMPEELREQVPLMKEVLEAMEIPIVSLEGYEADDLLGTLGR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            +E+ G  VTI+S D+DL+QL +       P T    TV E     + VI+K+ + PE++
Sbjct: 121 RSEQRGMEVTILSGDRDLLQLATDHVLIRIPKTTKGQTVIE-NYHTQEVIEKYQLRPEQI 179

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GDS DNIPGIPG+G KTA  +L  Y N+EN   +   IK  K +E++ ++ + 
Sbjct: 180 IDLKALMGDSSDNIPGIPGVGEKTATKILLAYENVENAYAHVEEIKPNKAKESLRDHYDL 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           A++S+ L  + TD P++   +   L +    R     + LEF  L+ R A 
Sbjct: 240 AQMSKALATIHTDSPVSFDYDQAKLGELYTQRAYEMFQRLEFKNLLQRFAC 290


>gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
 gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 204/534 (38%), Positives = 311/534 (58%), Gaps = 33/534 (6%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L K+ ENE   KI ++ K   +V HR  I ++    D+ML SY++D  R+  D+ S+   
Sbjct: 358 LIKWLENETTEKIVYDAKKTYVVAHRLDIDIKNIVFDVMLASYIIDPSRTIDDVNSVVSN 417

Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  ++ + +I    K +K  +P D I +  +          I +     + +++ E  L 
Sbjct: 418 YNQNFVQDDISIYGKGKKRHVPEDTILNKHIAS--------ITEAIYACKREMVAE--LE 467

Query: 568 VYERLDKPMID------VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            ++++D  +        ++S+ME TGI  D + L+Q+ +EI   L  L  NI++ +GE+F
Sbjct: 468 SHQQIDLLLNLELPLARILSEMEETGIYTDINDLRQMQSEIQGKLDLLISNIHEAAGEEF 527

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++SPKQLG +LF  L+ P   KTKTG + T    LEQ+  G +PII  ILE+RQLSK++
Sbjct: 528 NINSPKQLGVVLFETLELPVIKKTKTG-YSTAVDVLEQLQ-GQHPIIDYILEYRQLSKLQ 585

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY + L   I+K   R+HT ++     TGRL+S++PNLQNIP++ + G+KIR+AF   P
Sbjct: 586 STYVEGLQKVISK-DNRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KP 642

Query: 742 TKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           T     ++SADYSQIELR+LAHI +   + + F N  D+H   A ++F V   +V+  MR
Sbjct: 643 TSNDSVILSADYSQIELRVLAHITQDESMKEAFINEKDVHTATAMKVFDVEANEVNALMR 702

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       + +GY
Sbjct: 703 RQAKAVNFGIVYGISDYGLSQSLNITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKADGY 762

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           VET+  RR +  +INS   ++R   ER A+N PIQGSAADI + AM+   + ++      
Sbjct: 763 VETLLHRRRYIPDINSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDRQIKQTSYHA 822

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++LLQ+HDEL+FEVP  E+   S  +   ME A    + L VPLKV+    + W
Sbjct: 823 QLLLQVHDELIFEVPANEVEDFSLFVEEIMEHA----LQLDVPLKVDSNYGSTW 872



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 167/304 (54%), Gaps = 21/304 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K++    +E   SHF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIM----REEQPSHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R   P  L  Q P +R     + I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQSTPPELSEQFPYIRQLLDTYHIKHYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178
           +  A  +GF   I++ D+DL QL +    +Y T K+   D++H     + +K+ G+ P +
Sbjct: 117 SKEANDQGFETIIVTGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPEFIAEKYDGLNPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL+++  +E +  N   +  KK +E +    E
Sbjct: 176 IIDMKGLMGDASDNIPGVAGVGEKTAIKLLKQFNTVEGVYDNIDSVSGKKLKEKLENSRE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL--EDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            A +S+ L  +  + PI + L+  +L  +D N  + I   K LEF +L++      D D+
Sbjct: 236 DAFMSKDLATINKNSPIEVTLQDTVLKNQDDNKDK-IELFKKLEFKQLLS------DIDS 288

Query: 297 ANIE 300
            N E
Sbjct: 289 NNTE 292


>gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
 gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
          Length = 889

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 313/529 (59%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
           LK+F E    LK+ ++ K  K++L+R G++++    D  L  Y+L S   +++I++IA  
Sbjct: 371 LKEFLEKTS-LKV-YDFKKAKVLLNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIANL 427

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q +L+       K  K +IP       +  EH      V+++   +L  KL     L 
Sbjct: 428 YGQTYLADDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLGEHGQLD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+GE+FN++SPK
Sbjct: 484 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY   
Sbjct: 544 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVG 603

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 604 LQDWI-LDDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F L+  L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F R
Sbjct: 723 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 782

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+H
Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+     ++  +ME+A    I L VPL  +      W E
Sbjct: 843 DEIVLEVPKSELAAVKVLVKQTMEEA----IQLSVPLIADENEGATWYE 887



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        SH  V
Sbjct: 18  LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 73

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 74  AFDAGKTTFRTEMYSDYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 133

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K G+ P + 
Sbjct: 134 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPAQF 193

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLIIDKEQ 253

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284
           A LS+ L  + T  PI I L+ L+    NGP    L  F   + F +L
Sbjct: 254 AFLSKLLATIETQAPIEIGLDDLV---YNGPDVENLGKFYDEMGFKQL 298


>gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143]
 gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143]
          Length = 877

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 313/529 (59%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
           LK+F E    LK+ ++ K  K++L+R+G++++    D  L  Y+L S   +++I++IA  
Sbjct: 359 LKEFLEKTP-LKV-YDFKKAKVLLNRFGLNLQAPAFDSRLAKYLL-STVENNEISTIANL 415

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q +L        K  K +IP       +  EH      V+++   +L  KL     L 
Sbjct: 416 YGQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 471

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+GE+FN++SPK
Sbjct: 472 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPK 531

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY   
Sbjct: 532 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 591

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 592 LQDWI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 650

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 651 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 710

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F L+  L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F R
Sbjct: 711 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 770

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+H
Sbjct: 771 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 830

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+     ++  +ME+A    I L VPL  +      W E
Sbjct: 831 DEIVLEVPKAELAAVKVLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/288 (40%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        SH  V
Sbjct: 6   LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELPQYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K GI P + 
Sbjct: 122 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITPAQF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 182 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284
           A LS+ L  + T  PI I LE L+    NGP    L  F   + F +L
Sbjct: 242 AFLSKTLATIETQAPIEIGLEDLV---YNGPDVENLGKFYDEMGFKQL 286


>gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
 gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
          Length = 889

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 311/529 (58%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
            K+F E    LK+ ++ K  K++L+R G++++    D  L  Y+L S   +++I++IA  
Sbjct: 371 FKEFLEKTS-LKV-YDFKKAKVLLNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIASL 427

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q +L        K  K +IP       +  EH      V+++   +L  KL     L 
Sbjct: 428 YSQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+GE+FN++SPK
Sbjct: 484 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY   
Sbjct: 544 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 603

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 604 LQDWI-LDDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F LA  L I R +A  YI  YF RFPGI  Y+E+     R  GYVET+F R
Sbjct: 723 FGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKR 782

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+H
Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+     ++  +ME+A    I L VPL  +      W E
Sbjct: 843 DEIVLEVPKSELAAVKDLVKQTMEEA----IQLSVPLIADENEGATWYE 887



 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        SH  V
Sbjct: 18  LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 73

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 74  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 133

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K G+ P + 
Sbjct: 134 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPAQF 193

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 253

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284
           A LS+ L  + T  PI I L+ L+    NGP    L  F   + F +L
Sbjct: 254 AFLSKTLATIETQAPIEIGLDDLV---YNGPDVENLGKFYDEMGFKQL 298


>gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
 gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 311/529 (58%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
            K+F E    LK+ ++ K  K++L+R G++++    D  L  Y+L S   +++I++IA  
Sbjct: 6   FKEFLEKTS-LKV-YDFKKAKVLLNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIASL 62

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q +L        K  K +IP       +  EH      V+++   +L  KL     L 
Sbjct: 63  YSQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 118

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+GE+FN++SPK
Sbjct: 119 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPK 178

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY   
Sbjct: 179 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 238

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 239 LQDWILD-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 297

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 298 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 357

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F LA  L I R +A  YI  YF RFPGI  Y+E+     R  GYVET+F R
Sbjct: 358 FGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKR 417

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+H
Sbjct: 418 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 477

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+     ++  +ME+A    I L VPL  +      W E
Sbjct: 478 DEIVLEVPKSELAAVKDLVKQTMEEA----IQLSVPLIADENEGATWYE 522


>gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28]
 gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28]
          Length = 890

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 313/526 (59%), Gaps = 16/526 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K +  N    K   + K   + L   GI ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 371 FKAWLANGEMRKHTFDAKRAIVALKWKGIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 430

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 431 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 486

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D + L+ +  E++  L  +E+ IY L+G +FN++SPK
Sbjct: 487 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 546

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 547 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEG 604

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI- 746
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+      +I 
Sbjct: 605 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIIY 664

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQIELR+LAHIA    L + F++ +DIH   A ++FGV  ++V+  MRR AK +NF
Sbjct: 665 AADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNF 724

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS + L+  L I R  AA++I++Y   FPG+ EY++      +Q GYV T+  RR
Sbjct: 725 GIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRR 784

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  EI S   ++R+  ER A+N PIQGSAADI + AMI +   LE+  L  ++LLQ+HD
Sbjct: 785 RYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQVHD 844

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EL+FE P+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 845 ELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 886



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 15  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 70  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    E 
Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKKLKEKLEANKEQ 249

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 250 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 309

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 310 LDDITFDI 317


>gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18]
 gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18]
          Length = 890

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 199/528 (37%), Positives = 316/528 (59%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K +  N    K   + K   + L   GI ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 371 FKAWLANGEMRKHTFDAKRAIVALKWKGIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 430

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 431 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 486

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D + L+ +  E++  L  +E+ IY L+G +FN++SPK
Sbjct: 487 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 546

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 547 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEG 604

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 605 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 662

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 663 MYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 722

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY++      +Q GYV T+  
Sbjct: 723 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLN 782

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI + AMI +   LE+  L  ++LLQ+
Sbjct: 783 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQV 842

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 843 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 886



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 15  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 70  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYNLSPKQI 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    E 
Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKKLKEKLEANKEQ 249

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 250 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 309

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 310 LDDITFDI 317


>gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
 gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
          Length = 882

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 171/420 (40%), Positives = 266/420 (63%), Gaps = 6/420 (1%)

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           +L  KL  E++  ++  ++ P++  +  ME  G++++ + LK    ++   ++ LE+ IY
Sbjct: 467 VLEEKLKKEEMWKLFTEIEMPLVFTLFHMEQNGVRVEAEELKSYGEQLGGKIVQLEKEIY 526

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           +L+GE+FN++SPKQLG +LF  L  P+G KTKTG + T A  L+++   D PI+  ILE+
Sbjct: 527 ELAGEEFNINSPKQLGVVLFEHLSLPNGKKTKTG-YSTAADVLDKL-APDYPIVAKILEY 584

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQL+K+KSTYAD L   I++   R+H  ++   T TGR++S EPNLQNIP + +LG+ IR
Sbjct: 585 RQLAKLKSTYADGLAVFIHEDDHRIHGKFNQTVTATGRISSTEPNLQNIPARVELGRLIR 644

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           + F+       + ADYSQIELR+LAH +    L + +  + DIHR+ A+++F    ++V+
Sbjct: 645 KVFVPEEGYVFVDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVT 704

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              RR+AK +NF I+YGIS F L+  L I R EAA+YI RYF  +PGI ++++      +
Sbjct: 705 DLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEYIDRYFETYPGIKKFLDDAVAHAK 764

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           + GYV T+FGRR    E++S     R   ER A+N+PIQG+AADI + AMI+V K L   
Sbjct: 765 EQGYVVTLFGRRRPVPELSSSNFMQRQFGERVAMNSPIQGTAADIMKIAMIAVDKELRMR 824

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++++LQ+HDEL+ E  +EE     +I+   M  A     +L VPL++++    NW E
Sbjct: 825 NMKSRLVLQVHDELLIETWKEEEEEVREILKEGMMHAA----DLSVPLEIDMHSGKNWYE 880



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAF+  P L+   +GL  NAI GF N+++K+L+  + E    +  V FD
Sbjct: 13  IVLIDGHSILNRAFFGLPDLTNA-EGLHTNAIYGFLNIMFKILEEEKPE----YLTVAFD 67

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++++  YK  R  + E L  Q+PL++    A GI  IE +G EADD++ T + 
Sbjct: 68  VHAPTFRHKMFEAYKGTRKPMAEELRQQVPLMKEVLHAMGIRTIEQEGLEADDLLGTLSK 127

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
             E+ G  V IIS D+DL+QL +       P T    T  E    ++ V +K+ + P + 
Sbjct: 128 RCERMGMEVVIISGDRDLLQLATDHVEIRIPKTKRTGTEIENYYAVD-VKEKYQVTPTEF 186

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PG+G KTA  ++ EYG++EN   +AS +K  +  +N++EY + 
Sbjct: 187 IDVKALMGDTSDNIPGVPGVGEKTATKIIVEYGSIENAYKHASELKPPRASKNLVEYWDQ 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A++S+ L  +  D      LE   L +        + + L+F  L+NR    +D  + N 
Sbjct: 247 AQMSKVLATIDVDADFAYELEEAKLGNLYTEEAYVYFQRLQFKNLLNR----FDVQSENS 302

Query: 300 --EPVVLDINTTENKGIAIETE 319
             +  V+ +   E + I  E E
Sbjct: 303 IEDAFVIAVGKEEIQKIFAEAE 324


>gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3]
 gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3]
          Length = 890

 Score =  340 bits (872), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 199/528 (37%), Positives = 316/528 (59%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K +  N    K   + K   + L   GI ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 371 FKAWLANGEMRKHTFDAKRAIVALKWKGIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 430

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 431 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 486

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D + L+ +  E++  L  +E+ IY L+G +FN++SPK
Sbjct: 487 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 546

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 547 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEG 604

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 605 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 662

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 663 MYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 722

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY++      +Q GYV T+  
Sbjct: 723 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLN 782

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI + AMI +   LE+  L  ++LLQ+
Sbjct: 783 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQV 842

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 843 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 886



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 15  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 70  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    E 
Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKKLKEKLEANKEQ 249

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 250 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 309

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 310 LDDITFDI 317


>gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
 gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
          Length = 873

 Score =  340 bits (872), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 188/486 (38%), Positives = 289/486 (59%), Gaps = 23/486 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L++Y+LD  R+++    + +++              S+P   I++  V    +    
Sbjct: 406 DMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIANGSVDVECVSMVK 449

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L +  +       E+L  +YE ++ P+I  +  ME  GI ID + L + +A   + L 
Sbjct: 450 ALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTARFKEELT 509

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            ++E IY+L+GE FN++SPKQLG ILF KL  P   KTKTG + T A+ L+ +   ++PI
Sbjct: 510 QVQEEIYELAGETFNINSPKQLGVILFEKLNLPIIKKTKTG-YSTDAEVLDMLRH-ESPI 567

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ IL +R ++K+ STY + L   IN +T R+HT ++   T TGRL+S +PNLQNIP++T
Sbjct: 568 VEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 627

Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           + G++IR  F        L+SADYSQIELRILAH++    L + F    DIHR  AAE+ 
Sbjct: 628 EKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVL 687

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G + ++V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+P + EY+
Sbjct: 688 GKSQDEVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYM 747

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           ++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI + AM  
Sbjct: 748 DRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQ 807

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V + LE+    +++LLQ+HDELV EV   E+    +++  +M+      + L+VPL V++
Sbjct: 808 VEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSV----VELQVPLIVDV 863

Query: 967 KVSNNW 972
             + NW
Sbjct: 864 HHAENW 869



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/293 (38%), Positives = 174/293 (59%), Gaps = 10/293 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    E    + AV FD
Sbjct: 4   LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + + 
Sbjct: 59  KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                  AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++ +
Sbjct: 119 KFGAPDMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GDS DNIPG+PG+G KTA  L+ EYGNLE++  +   I  KK +E ++E  E A L
Sbjct: 179 KALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVENKELAFL 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           SR+L  ++TD+ ++  +E  + ++ +   +    + L FTKL  R+A    C+
Sbjct: 239 SRELATIKTDMELSYKVEDFV-QNFHASEVQPLFETLGFTKLTPRIAQVMGCE 290


>gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302]
 gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302]
          Length = 680

 Score =  340 bits (871), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 311/529 (58%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
           LK F E    LK+ ++ K  K++L+R+G+ ++    D  L  Y+L S   +++I++IA  
Sbjct: 162 LKDFLEKTP-LKV-YDFKKAKVLLNRFGLDLQAPAFDSRLAKYLL-STVENNEISTIASL 218

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q +L        K  K +IP          EH      V+++   +L  KL     L+
Sbjct: 219 YGQTYLVDDETFYGKGVKKAIP----ERETFLEHLARKVAVLVETEPVLLEKLSENGQLN 274

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ A     +  L + IY+L+GE+FN++SPK
Sbjct: 275 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAGNELVIEKLTQEIYELAGEEFNINSPK 334

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG++LF  L FP     KT    +TA D+ +      PI+K IL++RQ++KI+STY   
Sbjct: 335 QLGELLFENLGFPIEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 394

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 395 LQDWI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 453

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 454 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 513

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F L+  L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F R
Sbjct: 514 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 573

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+H
Sbjct: 574 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVH 633

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+    +I+  +ME+A    I L VPL  +      W E
Sbjct: 634 DEIVLEVPKSELAAIKKIVKQTMEEA----IQLSVPLIADENEGVTWYE 678



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258
           IG KT   LL E+G+LE I  N   +K  K +EN++   E A LS+ L  + T  PI I 
Sbjct: 4   IGEKTGIKLLLEHGSLEGIYENIDSMKASKMKENLVNDKEQAFLSKTLATIDTKAPIEIG 63

Query: 259 LEHLILEDCNGP---RLISFLKALEFTKL 284
           L+ L+    NGP    L  F   + F +L
Sbjct: 64  LDDLV---YNGPDIENLGKFYDEMGFKQL 89


>gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44]
 gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44]
          Length = 877

 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 188/486 (38%), Positives = 289/486 (59%), Gaps = 23/486 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L++Y+LD  R+++    + +++              S+P   I++  V    +    
Sbjct: 410 DMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIANGSVDVECVSMVK 453

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L +  +       E+L  +YE ++ P+I  +  ME  GI ID + L + +A   + L 
Sbjct: 454 ALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTARFKEELT 513

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            ++E IY+L+GE FN++SPKQLG ILF KL  P   KTKTG + T A+ L+ +   ++PI
Sbjct: 514 QVQEEIYELAGETFNINSPKQLGVILFEKLNLPIIKKTKTG-YSTDAEVLDMLRH-ESPI 571

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ IL +R ++K+ STY + L   IN +T R+HT ++   T TGRL+S +PNLQNIP++T
Sbjct: 572 VEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 631

Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           + G++IR  F        L+SADYSQIELRILAH++    L + F    DIHR  AAE+ 
Sbjct: 632 EKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVL 691

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G + ++V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+P + EY+
Sbjct: 692 GKSQDEVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYM 751

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           ++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI + AM  
Sbjct: 752 DRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQ 811

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V + LE+    +++LLQ+HDELV EV   E+    +++  +M+      + L+VPL V++
Sbjct: 812 VEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSV----VELQVPLIVDV 867

Query: 967 KVSNNW 972
             + NW
Sbjct: 868 HHAENW 873



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/293 (38%), Positives = 174/293 (59%), Gaps = 10/293 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    E    + AV FD
Sbjct: 8   LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + + 
Sbjct: 63  KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                  AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++ +
Sbjct: 123 KFGAPDMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GDS DNIPG+PG+G KTA  L+ EYGNLE++  +   I  KK +E ++E  E A L
Sbjct: 183 KALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVENKELAFL 242

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           SR+L  ++TD+ ++  +E  + ++ +   +    + L FTKL  R+A    C+
Sbjct: 243 SRELATIKTDMELSYKVEDFV-QNFHASEVQPLFETLGFTKLTPRIAQVMGCE 294


>gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 881

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/496 (39%), Positives = 301/496 (60%), Gaps = 28/496 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543
           D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P     D ++     
Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             SN +  L   L   L  +    ++  ++ P+  V+++MEI GI ++   LK +  E S
Sbjct: 455 RKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + T+   L ++   
Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573

Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +PI+++IL++R  +K+ STY        LP+H      ++HT Y    T TGRL+S++P
Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           N+QNIP + D G+ IR+AF+ S    ++ S+DYSQIELR+L+HI+    + + F++ +DI
Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R +A  +I  YF
Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER A+N PIQGSA
Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++   M+ A    +
Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSA----V 861

Query: 957 NLRVPLKVNIKVSNNW 972
           +L VPLKV       W
Sbjct: 862 HLDVPLKVESHYGPTW 877



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 164/312 (52%), Gaps = 11/312 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A    L R    DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 61  L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++EN+  N   +K+ K +EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +   + A LS++L  +  D P+T+ L  +     +  +L  F   +    L+ ++  +  
Sbjct: 237 INDKDNAFLSKQLATIDRDAPLTVDLADVTYAGPDLEKLRDFYTKMNMNSLLKKIGGSVA 296

Query: 294 CDAANIEPVVLD 305
                +   VLD
Sbjct: 297 KPVQAVHFSVLD 308


>gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
 gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
          Length = 1022

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/410 (41%), Positives = 258/410 (62%), Gaps = 5/410 (1%)

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  VYE+LD P++ V+ QME TG+++D +LL+++S+ ++  +  L E IY  SG +FN++
Sbjct: 616  LAEVYEQLDLPLVSVLLQMEQTGVRVDSNLLREMSSRLAVTIDDLAERIYASSGHRFNIN 675

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            SPKQLGD+LF K+  P   K   G+  +TAQD+ +     + +   +LE+RQL K+KSTY
Sbjct: 676  SPKQLGDVLFNKMDLPKPMKHGKGKVISTAQDILEDLAQHHEVPAIVLEYRQLQKLKSTY 735

Query: 685  ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
             D LP+ +     R+HT ++   T TGRL+S+ PNLQNIPI+T +G++IR AFI+ P   
Sbjct: 736  LDQLPS-LTDVNGRIHTTFNQVGTATGRLSSINPNLQNIPIRTAVGREIRAAFIAAPGNL 794

Query: 745  LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            L+SADYSQIELR++AH ++   L   +    DIH + AAE+F V+   +  + R  AK +
Sbjct: 795  LMSADYSQIELRLMAHFSQDPLLLDAYRTGKDIHTLTAAEVFEVDAATMDKETRARAKAV 854

Query: 805  NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            NF I+YGISPF LA QL I +  A  YI+RYF R+ G+  +IE+T   VR++  V+T FG
Sbjct: 855  NFGIVYGISPFGLAAQLGIDQKVAKAYIERYFDRYKGVATFIEQTLETVRRDQAVKTAFG 914

Query: 865  RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
            R     +I S   + R   ER A+N P+QG+AAD+ + AM+ +  ++    L + M LQ+
Sbjct: 915  RVRPIPDIQSRNPNQRGFAERTAVNTPLQGTAADLIKIAMLRIDAAIRTRNLRSLMTLQV 974

Query: 925  HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            HDEL+F+V  EE     +++   ME A        VP+   + + +NW++
Sbjct: 975  HDELLFDVVPEEADEMQELVKTEMESAA----EFSVPIVAEVGLGDNWRD 1020



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 150/538 (27%), Positives = 249/538 (46%), Gaps = 60/538 (11%)

Query: 7   LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++L+D  +FI+RA++A     P+ +R   G+P  A   F NM+ KL    RK+    + A
Sbjct: 10  IYLLDSMAFIFRAYHAMQRSRPMSTRT--GIPTAATYVFVNMINKL----RKDFQPQYLA 63

Query: 63  VIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLVRLA 101
            ++D  A   RNE                      Y  YKANR + P  L+ Q P +R A
Sbjct: 64  AVYDVGAPLLRNEQAKQMKDVQKFNIKTQEFETIEYGGYKANRAETPPDLIQQQPYIRRA 123

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
            +AF IP +  +GFEADD+I T +      G  V ++S+DKD+MQLV+    + + +K+ 
Sbjct: 124 LEAFRIPILFYEGFEADDVIGTLSCQLSALGHHVYVVSSDKDMMQLVNEDVSILNPMKDN 183

Query: 162 KI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
            I D   V    G+PP ++V + AL GD+IDNIPG PGIG K +  L+Q++G +E  L  
Sbjct: 184 LILDPAGVENVLGVPPARVVDVMALRGDAIDNIPGAPGIGDKGSVELIQQFGTVEGALDR 243

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           A+ +K+K  RE++    +   LS++LV + T VPI   L+H+  +  +     +    LE
Sbjct: 244 AAEVKKKTYRESLQNNRDNILLSKELVTIHTAVPIEFSLDHMRTQPVDNAACRALFTELE 303

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
           FT ++  +A   D DA    PV  +I  T +    +  E  R+ ++      + S     
Sbjct: 304 FTTMLKELAP--DVDAT---PVTYNIKATADDLAKLLAEA-REPSLAARDLEARSS---- 353

Query: 341 INSEQTPQKLFL---ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
             + Q P+ L +   E  Q +++  +  D        +   +  Q +   G A       
Sbjct: 354 -TANQLPRGLAIALAETTQAIAEE-VAADPSASAEVEESEPEPPQTMSLFG-ADEGAGDR 410

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
              +  S    +A+S    +D        +    ++  S D+ G           +++  
Sbjct: 411 AQGSGASSSELLALSPEPSQDPACRLGLAVTAGHAIEISLDTPG-----------IREAL 459

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
            +    K  H++K     L  + I++ G   D+ML SY+L+   SSH +  +A +  S
Sbjct: 460 ADPALPKQVHDLKAVLRALQPHDITLAGPITDVMLQSYLLNPTHSSHTLIDLAARTTS 517


>gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W]
 gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II]
          Length = 881

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/496 (39%), Positives = 301/496 (60%), Gaps = 28/496 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543
           D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P     D ++     
Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             SN +  L   L   L  +    ++  ++ P+  V+++MEI GI ++   LK +  E S
Sbjct: 455 RKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + T+   L ++   
Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573

Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +PI+++IL++R  +K+ STY        LP+H      ++HT Y    T TGRL+S++P
Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           N+QNIP + D G+ IR+AF+ S    ++ S+DYSQIELR+L+HI+    + + F++ +DI
Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R +A  +I  YF
Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER A+N PIQGSA
Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++   M+ A    +
Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSA----V 861

Query: 957 NLRVPLKVNIKVSNNW 972
           +L VPLKV       W
Sbjct: 862 HLDVPLKVESHYGPTW 877



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 165/312 (52%), Gaps = 11/312 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A    L R    DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 61  L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMDKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++EN+  N   +K+ K +EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +   ++A LS++L  +  D P+T+ L  +     +  +L  F   +    L+ ++  +  
Sbjct: 237 INDKDSAFLSKQLATIDRDAPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVA 296

Query: 294 CDAANIEPVVLD 305
                +   VLD
Sbjct: 297 KPVQAVHFSVLD 308


>gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1]
 gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1]
          Length = 869

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 201/533 (37%), Positives = 317/533 (59%), Gaps = 26/533 (4%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505
           ++ L+YLK    +E + K  +NIK   L     GI ++G   D+ L SY+L+      ++
Sbjct: 352 QDFLNYLK----DEKYSKYSYNIKAQILSARWNGIDIKGMNFDLQLASYILNPSLKD-EM 406

Query: 506 ASIAQKW----LSYTRKEILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            SI   +    + Y  +   K  K  IP ID ++      H +  +  I  L      +L
Sbjct: 407 KSICDYYDYDSVQYEEEVFGKLAKKHIPEIDLLA-----RHTVSKAKAIYDLKDEAIQRL 461

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
             E+   +Y+ L+ P+  +++ ME  G +ID  +LK++  +  + +  +EE+IY L+ ++
Sbjct: 462 KDEEQFDLYQNLELPVTYILADMEYVGAKIDIHVLKEMEMDFEQQIKQIEEDIYMLADKE 521

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSK 679
           FN+SSPKQLG++LF +L  P+G KTKTG   +T+QD LE+I  G +PII  I ++R L+K
Sbjct: 522 FNISSPKQLGEVLFERLGLPNGKKTKTGY--STSQDILEKIE-GLHPIIPLIQKYRMLTK 578

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           + STY   L   +     ++HT Y+ A T TGRL+S+EPNLQNIP++ + G+ IR+AFI 
Sbjct: 579 LSSTYVKGLQEQVFADG-KIHTIYNQALTQTGRLSSIEPNLQNIPVRQEEGKLIRKAFI- 636

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           P    L++ DYSQIELRILAH+A +  L + F    DIH   AA +F V  E+V+  MRR
Sbjct: 637 PSHDYLVTFDYSQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRR 696

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF IIYG+  F+L+ Q+ +   EA ++I+RYF  +P I  Y+++     +  GYV
Sbjct: 697 QAKAVNFGIIYGMGEFKLSQQIGVSLKEAKEFIRRYFEEYPEIKVYMDQIVEDCKNTGYV 756

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T+  R+ +   IN     +R    R A+N+PIQGS ADI + AM+ V++ ++D  L ++
Sbjct: 757 STVLNRKRYIPTINDKNFMVREQARRFAMNSPIQGSGADILKLAMMKVNQLMKDKHLKSE 816

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           M+LQ+HDEL+F+V ++E+    ++I  +M +A      + VPLKV+   ++NW
Sbjct: 817 MILQVHDELIFDVYKDELDEMMKLIKSAMVEA----FQMDVPLKVDGAYASNW 865



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 157/293 (53%), Gaps = 19/293 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+ +++ ++YAT  +       DG+P NA+ GF N L  +++ + K        V
Sbjct: 4   LVLIDGNYWLFSSYYATAAMGNLMVNKDGIPTNAVFGFANRLENVIKKNPK-----GIMV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+++  +YK  R + PE L  Q  +VR    A  IP  E++G+E DDII T
Sbjct: 59  AFDAKGKTFRSDLLEEYKGTRKETPEELKCQFEIVREFLDAHQIPYCELEGYEGDDIIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEKM 179
                 K+G+ V I++ DKD+MQLV     +Y     T  ++ I  +   +K+ + P++M
Sbjct: 119 LATQGSKQGYQVNIMTGDKDMMQLVDEHIHVYKRNTKTKTDDVITPKTFYEKYELQPDQM 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEY 236
             L  L GDS DNIPGIPG+G KTA  LL EY  +EN+  + S IK K   K RENI   
Sbjct: 179 RDLLGLMGDSADNIPGIPGVGEKTALKLLHEYQTIENLKDHCSEIKGKMGEKIRENI--- 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            E    S+++  +  D+P+ + L+       +  +L  F +  +   L+ +++
Sbjct: 236 -ELGIQSKQIATILKDIPLDVTLDDCHYVGYDFDKLKDFYQKYDMNSLLKKIS 287


>gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
 gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
          Length = 881

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/496 (39%), Positives = 301/496 (60%), Gaps = 28/496 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543
           D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P     D ++     
Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             SN +  L   L   L  +    ++  ++ P+  V+++MEI GI ++   LK +  E S
Sbjct: 455 RKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + T+   L ++   
Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573

Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +PI+++IL++R  +K+ STY        LP+H      ++HT Y    T TGRL+S++P
Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           N+QNIP + D G+ IR+AF+ S    ++ S+DYSQIELR+L+HI+    + + F++ +DI
Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R +A  +I  YF
Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER A+N PIQGSA
Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++   M+ A    +
Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSA----V 861

Query: 957 NLRVPLKVNIKVSNNW 972
           +L VPLKV       W
Sbjct: 862 HLDVPLKVESHYGPTW 877



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 165/312 (52%), Gaps = 11/312 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A    L R    DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 61  L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++EN+  N   +K+ K +EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +   ++A LS++L  +  D P+T+ L  +     +  +L  F   +    L+ ++  +  
Sbjct: 237 INDKDSAFLSKQLATIDRDAPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVA 296

Query: 294 CDAANIEPVVLD 305
                +   VLD
Sbjct: 297 KPVQAVHFSVLD 308


>gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 849

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 299/499 (59%), Gaps = 28/499 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + +Y+L+  +SS+    +A+++L+     IL +R      +++   +  E A E S 
Sbjct: 365 DAGVAAYLLNPLKSSYTYDDMAKEYLN---GRILPAR------EELLGKKTVEKAWEESA 415

Query: 548 VILQLWL-------LLRPKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             L  W        L   K + E L      +VY +++ P+I  +  ME  GI +  + L
Sbjct: 416 EGLAAWACYMAYTALACRKPMCEALRDTGMWNVYTQIELPLIFTLDSMEKWGISVKSEEL 475

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K    ++S  +  LE+ I+  +GE+FN++SPKQ+G ILF KL    G KTKTG + T A 
Sbjct: 476 KSYGEKLSVRIGELEKQIWQQAGEEFNINSPKQMGVILFEKLGLKGGKKTKTG-YSTAAD 534

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   + PI+K+ILE+RQL+K+KSTYAD L   I +   R+H+ ++   T TGR++S
Sbjct: 535 ILEKL-APEYPIVKDILEYRQLAKLKSTYADGLVGEIAE-DGRIHSTFNQTITATGRISS 592

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIP++ +LG+ IR+ F+       + ADYSQIELR+LAH++    L Q ++ + 
Sbjct: 593 TEPNLQNIPVRMELGRLIRKVFVPEEGYVFLDADYSQIELRVLAHMSGDEKLIQAYKEAQ 652

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  A+E+F V  ++V+   RR+AK +NF I+YGIS F L+  L I R EAA+YI+RY
Sbjct: 653 DIHRHTASEVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEYIERY 712

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I  +++      ++ GYV T+FGRR    E+ S     R+  ER A+N+PIQG+
Sbjct: 713 FETYPKIKGFLDGLVEEGKEKGYVTTMFGRRRPIPELKSGNFMQRSFGERVAMNSPIQGT 772

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM  V++ L+D  L ++++LQ+HDEL+ E  +EEI   S I+   M+ A    
Sbjct: 773 AADIIKIAMNRVYRRLKDENLKSRLVLQVHDELLIETCKEEIPQVSAILEEEMKGAA--- 829

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L V L+V++   NNW E
Sbjct: 830 -KLSVELEVDMHQGNNWYE 847



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 137/266 (51%), Gaps = 20/266 (7%)

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
           ++  YK  R  +PE L  Q+PL++    A G+  +  +G+EADDI+ T    +E  G   
Sbjct: 1   MFEAYKGTRKPMPEELREQVPLIKEMLTAMGVNVVTKEGYEADDILGTLARKSEAAGMDA 60

Query: 136 TIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           TI+S D+DL+QL +       P T    T  E+    + VI+K+ + P +++ L+AL GD
Sbjct: 61  TILSGDRDLLQLATDKVMIRLPKTVRGKTTIED-YHAQQVIEKYQVTPPQIIELKALMGD 119

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           S DNIPGIPG+G KTA  ++ EYG++EN   +   +K  + RE++ E+ + A++S+ L  
Sbjct: 120 SADNIPGIPGVGEKTATKIIVEYGSIENAHEHLEELKPNRARESMREHYDMAQMSKALAT 179

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT-----------YDC-DA 296
           + TD PI    E   L +          + LEF  L+NR  +            + C D 
Sbjct: 180 ICTDSPIEFSYEKAKLGNLYTKEAFLLCRQLEFKNLLNRFDSAAVQEDTLEQEFFTCADL 239

Query: 297 ANIEPVVLDINTTENKGIAIETEIDR 322
           A  E +       +  G+++ TE  R
Sbjct: 240 AGCEALFAKAEAGKTAGVSLVTENGR 265


>gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 857

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/488 (38%), Positives = 295/488 (60%), Gaps = 22/488 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L +Y+LD  R+++ +  +++ +   T  E+                + Q      + 
Sbjct: 389 DVTLAAYLLDPTRTAYGLTYLSEVF-GRTLNEV--------------KGEAQNETANEAA 433

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +  L+  ++  L  + L  ++E ++ P+   ++ ME+ G  +++D L+++ A++S+   
Sbjct: 434 FVYSLYGPVQQALEEKGLSSLFETIESPLERTLAVMELNGFTVNRDRLEEMKADLSREAD 493

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           +LE  IYDL+GE FN++S KQLG ILF K+  P   KTKTG + T +  LE++    + I
Sbjct: 494 ALETEIYDLAGESFNINSTKQLGVILFEKMGLPVIKKTKTG-YSTDSSVLEEL-AEQSEI 551

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           +  IL++R L K+ STY D L   I+++T+RV+T ++   T TGRL+S +PNLQNIPI+T
Sbjct: 552 VPKILKFRALKKLISTYLDGLEPLIDEKTERVYTSFNQMVTATGRLSSSDPNLQNIPIRT 611

Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           + G+KIR  F+       L+S DYSQIELR+LAH+++   +   F+++ DIHR  A+E+F
Sbjct: 612 EQGRKIRSFFVPGEGYDYLVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDIHRRTASEVF 671

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV  ++V+ ++R HAK +NF IIYGIS F L+  L I R+ A +YI+ YF R+  IH+Y+
Sbjct: 672 GVPFDEVTGELRSHAKAVNFGIIYGISDFGLSRNLGITRNRAKEYIESYFARYSTIHDYM 731

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
                  R+ G   T+FGR     EI+S     R+  ER A+N PIQGSAADI + AM +
Sbjct: 732 NGLVEEARRTGESRTMFGRLRTLPEISSKNFMRRSFAERTAMNTPIQGSAADIIKLAMNA 791

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V K LE   L ++ML+Q+HDELV EVP +E  T  +++  +ME+     + L VPL  +I
Sbjct: 792 VQKKLEALNLHSRMLVQVHDELVLEVPAQEKETIEKLLKETMEEV----VTLSVPLIADI 847

Query: 967 KVSNNWQE 974
               NW+E
Sbjct: 848 HTGTNWEE 855



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/288 (37%), Positives = 157/288 (54%), Gaps = 10/288 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           +L ++DGSS +YRAFYA P LS    G P NA+ GF NML KL  +        + AV F
Sbjct: 4   NLMIIDGSSLLYRAFYAMPPLSDSQ-GRPTNAVYGFLNMLLKLYADLD----PYYVAVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+Y DYKA R   P+ L PQ  L+R      GI  +E +G+E DDII T  
Sbjct: 59  DKDKHTFRNELYADYKATRKPAPDELRPQFALIREVLACLGIHVLETEGYEGDDIIGTVA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDI--EHVIKKWGIPPEKMVC 181
                +  +V++I+ D+D +QLV     +Y T K   E + +  + + +++G  P +++ 
Sbjct: 119 KQVPTDNTSVSVITGDRDALQLVDDNITVYLTKKGISEMLAVTPDVMQEEYGYTPAQVID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++AL GD+ DNIPG+PG+G KTA  L+ EYG +E +  +   I  KK RE + +  + A 
Sbjct: 179 MKALMGDTSDNIPGVPGVGEKTALKLITEYGTVEGVYEHLDDISGKKLREKLADNKDKAM 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           LS++L  +   VP+    E   L       +    K L F  L+ R A
Sbjct: 239 LSKELATINCHVPVEFD-EAGFLPHPREGEVRDLFKQLGFRNLLKRFA 285


>gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 750

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 263/804 (32%), Positives = 425/804 (52%), Gaps = 87/804 (10%)

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           KTA  LL EYG+L++I  + ++IK     + + +  E A  S+ +  +  DVP+ I  E 
Sbjct: 1   KTAVKLLAEYGSLDSIYESVNQIKGAIANK-LKQGQELAYHSQTMARIICDVPLDINWED 59

Query: 262 LILEDCNGPRLISFLKALE---FTKLINRVATT----YDCD-----AANIEPVVLDINTT 309
             L+  +   LI  LK LE   F   IN++ +     +D +     +A+  P  L+I+  
Sbjct: 60  CQLQGFDSQELIPLLKQLEFHGFINKINQLQSQFKGLFDVEINSSISASSPPTELEISEN 119

Query: 310 ENKGIAIETEI--DRDTTIKTSQFS-SLSDQTSKINSEQTPQKL--FLERLQKL--SQYP 362
            +     +       DTT++T   + S+  Q       QTP+ L   + RL+     + P
Sbjct: 120 NDNNEDEDVWFFSAEDTTLETKAIAPSIHPQII-----QTPEALAILVNRLKTHINPEKP 174

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +  D+ T  +  +D       L  IG      ++D                         
Sbjct: 175 VAWDTETTSLEPRD-----ANLVGIGCCWGSELSDLA----------------------- 206

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                +I L+ HT     G+    +++L  L+   E+E + K   N K+D+L+L   GI+
Sbjct: 207 -----YIPLN-HTQ----GEMLNIEQVLEALRPILESEEYPKTLQNAKFDRLILRSQGIT 256

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK-ISDSQVQE 540
           ++G   D ML SY+++   SSH++  ++ ++L      + +S    +P  K I+D  +  
Sbjct: 257 LKGVVFDTMLASYIINP-ESSHNLTDLSLRYLP-DLGIVAQSYSQLVPKGKTIADLDINT 314

Query: 541 HA-IENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            A     +V     +  + + I++   +L  +  ++++P+  +++ ME  GI+ID D L 
Sbjct: 315 VANYCGLDVFTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLN 374

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTA 654
           Q+S ++ + L +LE+  +  +GE FNL SPKQL ++LF +L+       KTKTG + T A
Sbjct: 375 QLSQQLGETLDNLEKTSHQAAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTG-YSTDA 433

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++   D+P+I +ILE+R LSK+KSTY D+LP  +   T R+HT ++ A T TGRL+
Sbjct: 434 TVLEKLK-HDHPVINSILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQAITSTGRLS 492

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPI+T+  ++IR+AFI      L+SADYSQIELRILAH+++   L + +  +
Sbjct: 493 SSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTN 552

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H + A  +F  + + ++P+ RR  K INF +IYG+   R A ++ +  +    +I R
Sbjct: 553 QDVHSLTAKLLF--DRDGITPEERRLGKIINFGVIYGMGAQRFAREVGVSATAGKQFIDR 610

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE----RAAINA 890
           +  ++PG+ EY+E  K      GYVETI GRR +++ +        N  +    RAA NA
Sbjct: 611 FNSQYPGVFEYLESQKLAAINQGYVETILGRRRYFESLKGRDRDRLNYQDEQMLRAAANA 670

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGS+ADI + AMI + + L++++   ++LLQ+HDELVFEVP  E       I  +ME 
Sbjct: 671 PIQGSSADIIKIAMIKLAEILKNYQ--ARLLLQVHDELVFEVPLSEWEELEYQIKSTMEN 728

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
            CL    L VPL V+I    NW E
Sbjct: 729 -CL---FLSVPLVVDIHAGTNWME 748


>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
 gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
          Length = 861

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/489 (37%), Positives = 298/489 (60%), Gaps = 21/489 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543
           D+ML +++LD   S +D   +A+K+    + +++++  K  K  + +++ + +   + A 
Sbjct: 386 DVMLEAFLLDGMISDYD--KLAEKYAFDCTLSKEDVFGKKGKPKLVVEEDAAAYAMQCAE 443

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             +N+  QL+  L  K + E    +Y+ ++ P+++V+  ME  G+    + L++++    
Sbjct: 444 NLANIEQQLFDELEQKDMKE----LYDTIEMPVVEVLYAMEKEGVHTSVETLQEIAEATG 499

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           K + +L   IY+ +G +FN++SPKQL  +L+ +L  P G K  TG     A  LE++   
Sbjct: 500 KKIEALNAQIYEYAGMEFNINSPKQLAVVLYDELGLPCGKKRSTG-----ADVLEKLKPV 554

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +PII  +LE R+  KI STYA  L  HI K   ++HT ++   T TGRL+S EPNLQNI
Sbjct: 555 -HPIISLLLEQRKYQKIYSTYAVGLSKHILKDG-KIHTIFNQIQTQTGRLSSSEPNLQNI 612

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            ++ + G+ IR+AF++ P   L+SADYSQIELR+LAH+A    + Q F   +DIH   A 
Sbjct: 613 SVRDEEGKVIRKAFVASPQHTLMSADYSQIELRMLAHMANEKTMIQAFNQGIDIHNQTAM 672

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           +IF V+ + V   MRR AKT+NF I+YG S F L+ QL I   EA  +I +YF  +P I 
Sbjct: 673 QIFDVDHDHVDSNMRRSAKTVNFGIVYGQSDFGLSEQLGITMKEAKRFIDKYFASYPNIK 732

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +++ T  F  +NGYV+T+FGRR +  EIN     +R   +RAA+NAPIQGSAAD+ + A
Sbjct: 733 TFMDDTIAFCEENGYVKTMFGRRRYIKEINDKNYMMREFGKRAAMNAPIQGSAADLIKLA 792

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ +++++++ K+ ++M+LQIHDEL+F+V ++E+ T   I+   M++A    + LRVPL 
Sbjct: 793 MVHIYQTMKEKKVKSRMILQIHDELIFDVCDDELDTMKDIVEQGMQQA----MQLRVPLI 848

Query: 964 VNIKVSNNW 972
                   W
Sbjct: 849 AEASFGKTW 857



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/262 (37%), Positives = 156/262 (59%), Gaps = 17/262 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S ++RA+YAT L  R     +G+P NA+ GF  M+ K L     + +     V
Sbjct: 4   LLLIDGNSMLFRAYYAT-LYGRMMTTSNGIPTNAVYGFITMVNKALDMIDPDYVF----V 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFR+  Y +YK  R ++ + L+ Q P+VR    A GI   E +G EADDII +
Sbjct: 59  AWDAGKPTFRHTTYKEYKGTRKELDKELIVQFPIVREYLDAAGIKRYECEGIEADDIIGS 118

Query: 124 YTYIAEKE-GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
              IA++    A+ I+S+D+DL+QL+ PTT +Y   K     E +D   +++ + + P++
Sbjct: 119 ---IAKQHPELAIHILSSDRDLLQLIDPTTDVYLMKKGISEIEVMDEAQLMETYTLCPQQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+AL GDS DNIPG+ GIG KTA  LL+EY +++N+  + + IK  K +E +    E
Sbjct: 176 IIDLKALMGDSADNIPGVKGIGEKTAIKLLKEYQSVDNVYEHIAEIK-GKLKEKLENGKE 234

Query: 239 TARLSRKLVMLRTDVPITIPLE 260
           +A LS+ L  ++TD  I + ++
Sbjct: 235 SAFLSKFLATIKTDAKIPVDMK 256


>gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4]
          Length = 901

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/491 (37%), Positives = 292/491 (59%), Gaps = 11/491 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ-VQEHAI 543
           D+ + +Y+L+  ++++    +A + L      + ++    K +  ++  S  + V  +A 
Sbjct: 416 DVAVAAYLLNPTKNAYTADDVASEILGIIIPAQADLFGKTKLNAALEDDSMLEAVTTYAC 475

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            N+ V    +  +  ++  E +L +YE ++ P++  +  ME+ GI +D++ L +  + +S
Sbjct: 476 YNAYVAFAAFEKVIAEIKEEGMLDIYENIEMPLVYTLFDMELQGIAMDKEALAEYGSRLS 535

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             +  LE++IY  +GE+FN++SPKQLG ILF K+    G KTKTG + T A  LE+++  
Sbjct: 536 VRINELEQSIYSQAGEEFNINSPKQLGVILFEKMGIEGGKKTKTG-YSTAADVLEELSA- 593

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            NPII +ILE+RQL+K+KSTYAD L   +++   R+ + +    T TGR++S EPNLQNI
Sbjct: 594 TNPIICDILEYRQLAKLKSTYADGLAACVDE-DGRIRSTFMQTVTATGRISSTEPNLQNI 652

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI+ +LG++IR+ F        + ADYSQIELR+LAH++    L   F+   DIHR  A+
Sbjct: 653 PIRMELGREIRKVFYPKKDCVFLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHRSTAS 712

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            +F    ++V+   RR AK +NF I+YGIS F LA  + + R EA +YI  YF  +P +H
Sbjct: 713 LVFNTPFDEVTDLQRRRAKAVNFGIVYGISAFGLAKDIGVGRKEAQEYIDNYFVAYPKMH 772

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           E++E  K+  ++ GYV T++GRR    E+ S     R   ER A+N+PIQG+AADI + A
Sbjct: 773 EFLEGLKSHAKEKGYVTTMYGRRRPIPELASSNFMTRQFGERVAMNSPIQGTAADIIKIA 832

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M++VH  L    L +K+LLQ+HDEL+ E  E E     ++I   ME A      L V L+
Sbjct: 833 MVNVHDRLLKEGLKSKLLLQVHDELLVETLESERPQVEKLIAEEMENAA----KLAVDLE 888

Query: 964 VNIKVSNNWQE 974
           +++     W E
Sbjct: 889 IDMNSGKTWAE 899



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 160/290 (55%), Gaps = 13/290 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG S   RAFY  P L+    G    AI GF NM+ K + + + +    +FAV 
Sbjct: 2   SKLLLIDGHSIANRAFYGVPDLTNSA-GEHTGAIFGFLNMMLKFIDDEQPD----NFAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANR-PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD  A TFR++++  YK  R P +PE L  Q+P ++   +A G+P I  +G+EADDI+ T
Sbjct: 57  FDVSAPTFRHKMFDAYKGTRKPMLPE-LKEQIPRIQEMLKAMGVPVITKEGWEADDILGT 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPE 177
              + E++GF VTI+S D+DL+QL +    +     K+   +IE+     V + +G+ P+
Sbjct: 116 LARMGEEKGFDVTIVSGDRDLLQLATDKVKISIPKTKKGGTEIENYYAADVKEAYGVTPK 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GDS DNIPG+ GIG KTA   + EYG++E    +   +K+ K  +N ++  
Sbjct: 176 QFIDVKALQGDSSDNIPGVEGIGPKTAEKWIAEYGSIEECHAHVDEMKKGKVLQNFIDQW 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           E A LS++L  +    PI +      LE+          K  E  KL+ R
Sbjct: 236 EMAVLSKELATINVYAPIQLEEGSTKLENLFTEEAYLLCKRYELKKLLPR 285


>gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29]
 gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29]
          Length = 890

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/528 (37%), Positives = 316/528 (59%), Gaps = 20/528 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            K +  N    K   + K   + L   GI ++G + D+++ +Y+LD   +  D  ++A+ 
Sbjct: 371 FKAWLANGEMRKRTFDAKRAIVALKWKGIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 430

Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             ++  K   E+  K  K ++P  ++    V EH     +V+  +      +L   +   
Sbjct: 431 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 486

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  L+ P+  V++ ME+ G+++D + L+ +  E++  L  +E+ IY L+G +FN++SPK
Sbjct: 487 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 546

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF  L  P   KTKTG + T+A  L+++    + II NIL +RQL K+ STY + 
Sbjct: 547 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEG 604

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744
           L   +++ + ++HT ++   T TGRL+S +PNLQNIPI+ + G+KIR+AF+  P+++   
Sbjct: 605 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 662

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA    L + F++ +DIH   A ++FGV  ++V+  MRR AK +
Sbjct: 663 MYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 722

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGIS + L+  L I R  AA++I++Y   FPG+ EY++      +Q GYV T+  
Sbjct: 723 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLN 782

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   ++R+  ER A+N PIQGSAADI + AMI +   L++  L  ++LLQ+
Sbjct: 783 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLDEEGLQARLLLQV 842

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+FE P+EEI    +++   ME A    I L VPLKV+      W
Sbjct: 843 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 886



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 15  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 70  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T  C+      + ++   E + +K+ + P+++
Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +    E 
Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKKLKEKLEANKEQ 249

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
           A +S+ L  + TD PIT+ ++ +  +      +I   + L FT L+N++  T +  A A 
Sbjct: 250 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 309

Query: 299 IEPVVLDI 306
           ++ +  DI
Sbjct: 310 LDDITFDI 317


>gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
 gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
          Length = 880

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/491 (38%), Positives = 292/491 (59%), Gaps = 16/491 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           D++L +Y++ S     D   IAQ++    + Y  +   K  K ++P+     S  + H  
Sbjct: 400 DLLLAAYLIQSSIGKQDFTFIAQQFQITDIQYDEEVYGKGAKKALPL---IPSDYEGHIA 456

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           + + +I +L       L     L +   ++ P+ DV++ ME  G+ +D   L+  + ++S
Sbjct: 457 KKAYIIHKLMQQTLDVLTERNQLSLLNDVELPLSDVLADMEYQGLTVDLKELENQTKDMS 516

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             +  L   I  L+G  FN+ SPKQLGD+LF  L  P+G KTKTG + T  + L  +   
Sbjct: 517 LRIDKLRTEILLLAGVDFNVDSPKQLGDVLFDTLGLPNGKKTKTG-YSTGIEVLNNL-ID 574

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +PII  I+E+RQL+K+ STY   +   + +   RVHT Y+ A T+TGRL+SLEPNLQNI
Sbjct: 575 HHPIINLIIEYRQLTKLYSTYLIGIKESVFE-DNRVHTIYNQALTLTGRLSSLEPNLQNI 633

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI+T+ G++IR+ FI  P    + ADYSQIELR+LA +A +  L Q FE   DIH + A 
Sbjct: 634 PIRTEEGRQIRKLFIPEPDSYFVGADYSQIELRVLAAMADVKNLKQAFEEDQDIHTVTAQ 693

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           ++F  +++ V  + RR AK +NF IIYGI P+ L+  + +   EA ++I RY   +P I 
Sbjct: 694 KVF--HVDTVDSEQRRRAKAVNFGIIYGIGPWSLSEDIGVTVKEAENFISRYLEVYPEIK 751

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +Y+     F + +GYVET+  RR +  E++S   ++R   +R ++NAPIQG+AADI + A
Sbjct: 752 DYMTNIVEFAKTHGYVETLLNRRRYIPELSSKVFNLREFGKRTSLNAPIQGTAADIIKLA 811

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           MI +H  L+D+K  +K++LQ+HDEL+ EV +EE+    ++I + MEKA     NL V LK
Sbjct: 812 MIDLHNYLKDNKKKSKLILQVHDELIVEVVKEELDEMKEVIPNIMEKA----FNLGVRLK 867

Query: 964 VNIKVSNNWQE 974
            +  V NNW E
Sbjct: 868 TSCDVGNNWYE 878



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/285 (38%), Positives = 156/285 (54%), Gaps = 14/285 (4%)

Query: 9   LVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           LVDG+S ++RA+ AT     K      G+  NA+  F  M+ K+++ S      SH  + 
Sbjct: 6   LVDGNSILFRAYNATAYPGAKVLQTSTGIYTNAVFAFSGMIDKIIEISN-----SHMLIA 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    T R++ Y DYKA R ++PE L  Q+PL+    +  GI    + G+EADDII T 
Sbjct: 61  FDTGEPTHRHKSYDDYKAGRKEMPEELGSQIPLIHELIKYLGIKEYSMAGYEADDIIGTL 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AEK G+ V + S+D DL+QLV+    ++   K     E    E + + +G   E  +
Sbjct: 121 AKMAEKAGYKVDVFSSDYDLLQLVTEHITVHMLKKGMRVVETYTPETLKETYGFSHELFI 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG+PG+G  TA  L+ EYG LENIL NA  IK  K  ENI    E A
Sbjct: 181 DFKALVGDKSDNIPGVPGVGEVTAKKLIAEYGTLENILNNAEHIK-GKLGENIRTNKEQA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
             S++L  + TD+P+   LE   + + +   LI+F K LE  +L+
Sbjct: 240 VFSKELSTILTDMPLPFDLEDTKVGEVDEESLINFYKRLELKQLV 284


>gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334]
 gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334]
          Length = 889

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 301/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++LHR+G+ ++    D  L  Y+L S    ++IA+IA    Q +L        
Sbjct: 383 YDFKKAKVLLHRFGLDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 441

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 442 KGVKKALP----EREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 497

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 498 KMEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPL 557

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 558 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 616

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 617 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 676

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 677 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSN 736

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 737 NLGISRKEAKSYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 796

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 797 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAE 856

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 857 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 887



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 18  LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 70

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 71  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGICHYELAQYEADDI 130

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    +++++K GI P
Sbjct: 131 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITP 190

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 191 TQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLIHD 250

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 251 KEQAFLSKTLATIDTKAPIEIGLEDLVYSGPDVENLGKFYDEMGFKQL 298


>gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24]
          Length = 905

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 286/994 (28%), Positives = 470/994 (47%), Gaps = 120/994 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ +     
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKTKPLTNDK--GFPTGLLTGLVGMVKKFYKDKKN---M 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
                  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +EI GFEAD
Sbjct: 62  PFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IAT   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAT---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  GI GIG K A  LLQ+ G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGNKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E+A LS++L  L         ++      C  P     LK  +  K    ++T  D +
Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFSSCVFPSENPLLKIKDELKEYGFISTLRDLE 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +    +V      EN  I     +D   T+ ++    + D T  ++S  TP+K  +  L
Sbjct: 292 NSPTPLIV------ENAPI-----LDNAPTLDST---PILDNTPTLDS--TPKKSRMIVL 335

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAIAISTL 414
           +                NT  +  ++++L+   +  F +++ D       K +A+A    
Sbjct: 336 E----------------NTAPLSAFLEELKNPNARVFMRLVLDK----EKKVLALAFLLQ 375

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN--EHFLKIGHNIK-Y 471
           DQ      + E +F   S                 L +L+  F    +H   IGH++K  
Sbjct: 376 DQGYFLPLE-EALFSPFS-----------------LEFLENAFSQILQHAQIIGHDLKPL 417

Query: 472 DKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSS 527
              +  +Y + +     +D  +++++ +  +   D              E+LK   ++  
Sbjct: 418 LSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEDL 463

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLR------PKLIVEKLLHVYERLDKPMIDVVS 581
           IP +KI D + +  A ++  + ++L  L R         + E LL +   ++ P + V+ 
Sbjct: 464 IPHEKIKDFKTKSKAEKSEQLNMELNALKRLCEHFEKGGLEEDLLILARDIETPFMKVLM 523

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  G +ID    K++  E    L  LE  I DL G  FNL+SPKQLG++L+ KL  P 
Sbjct: 524 GMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLP- 582

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               K     T  ++L +I    +P I  ILE+R+L+K+ +TY   L   +  +  ++HT
Sbjct: 583 ----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKLFNTYTTPLL-RLKDKDDKIHT 636

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAH 760
            +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH
Sbjct: 637 TFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAH 696

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
            ++   L + F    DIH   +  +FG   E+++ + R  AK+INF ++YG+   +L+  
Sbjct: 697 FSQDKDLMEAFLKGRDIHLETSKALFG---EELAKEKRSIAKSINFGLVYGMGSKKLSET 753

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L IP +EA  YI+ YF RFP I +Y+   +  + +     T+ GR   +D  N     I+
Sbjct: 754 LNIPLNEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFD-FNGVNDYIK 812

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+     
Sbjct: 813 GNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPEL 871

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            Q I   +     P   LRVPL+ +  ++  W E
Sbjct: 872 QQEIQRILNDEVYP---LRVPLETSAFIAKRWNE 902


>gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
 gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
          Length = 889

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 210/529 (39%), Positives = 311/529 (58%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
            K+F E    LK+ ++ K  K++L+R G++++    D  L  Y+L S   +++I++IA  
Sbjct: 371 FKEFLEKTP-LKV-YDFKKAKVLLNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIANL 427

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q +L        K  K +IP       +  EH      V+++   +L  KL     L 
Sbjct: 428 YGQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+GE+FN++SPK
Sbjct: 484 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY   
Sbjct: 544 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 603

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 604 LQDWI-LDDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F L+  L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F R
Sbjct: 723 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 782

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+H
Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+     ++  +ME+A    I L VPL  +      W E
Sbjct: 843 DEIVLEVPKSELAAVKALVKQTMEEA----IQLSVPLIADENEGATWYE 887



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/285 (39%), Positives = 153/285 (53%), Gaps = 11/285 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        SH  V
Sbjct: 18  LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 73

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 74  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDYLGIRHYELAQYEADDIIGT 133

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K G+ P + 
Sbjct: 134 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPAQF 193

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  IG KT   LL E+G+LE+I  N   +K  K +EN++   E 
Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLESIYENIDGMKASKMKENLINDKEQ 253

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           A LS+ L  + T  PI I L+ L+    +   L  F   + F +L
Sbjct: 254 AFLSKTLATIDTQAPIEIGLDDLLYSGPDVENLGKFYDEMGFKQL 298


>gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469]
 gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469]
          Length = 912

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/489 (38%), Positives = 283/489 (57%), Gaps = 23/489 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + +Y+L+S RSS DI  + + +      E         P D+I  + ++  A     
Sbjct: 443 DTGVAAYLLESDRSSFDINGLVELYFGSELPE---------PTDEIPAAALRAVAARALV 493

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L        KL  +  L ++  L+  ++ V++ ME  G+ +D   L + SA++ +++ 
Sbjct: 494 PVLT------KKLEDDGSLELFTSLEMQLLPVLAAMERRGLYVDPQKLAEQSAQLGEDIA 547

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDN 665
               +I+  +GE FNL SP QL  ILF  LK P+    KT+TG + T A+ L ++   + 
Sbjct: 548 QRVASIHQTAGEDFNLDSPSQLSHILFDVLKLPTYGLKKTRTGFYSTNAKVLGEL-AQEY 606

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            I+ ++LE+R+ +KIKSTY D+LP+ I +  +R+HT  +   T TGRL+S +PNLQNIP 
Sbjct: 607 QIVADVLEYRERAKIKSTYLDALPSLI-RGDKRIHTTLNQTVTATGRLSSSDPNLQNIPT 665

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +++LG ++R AF  P     ++ DYSQIELR+LAH++    L   F +  D H   AA +
Sbjct: 666 RSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADEHLVAAFNSGADFHAATAARV 725

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FGV +E+V+P +R  AK +NF I+YG   F LAT L+I R EA + I RYF  +PG+  Y
Sbjct: 726 FGVPVEEVTPALRSRAKAVNFGIVYGQQAFGLATSLKISRKEAQEMIDRYFDAYPGVRAY 785

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++ +     + GY  T++GR+ H  E N     +    ER A+N P+QGSAADI + AMI
Sbjct: 786 LDDSVRTAHECGYAITMYGRKRHIREFNQSNRQLIAFGERTAMNHPMQGSAADIIKIAMI 845

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +V K L D  L +K++LQIHDEL  EVPE EI T S ++  +ME      + LRVPL  +
Sbjct: 846 NVEKRLRDEGLTSKLILQIHDELDLEVPESEIETVSTLVKETMEDV----VTLRVPLIAD 901

Query: 966 IKVSNNWQE 974
           +   +NW E
Sbjct: 902 VSYGSNWAE 910



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 153/296 (51%), Gaps = 10/296 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S ++RAF+A        DG P  A+ GF NM  KL+++   + +       FD  
Sbjct: 32  VIDGNSLMHRAFHAIRQPMAAPDGTPTGALFGFFNMFIKLVESFSPDGVI----CAFDKG 87

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R ++ P YKA RP +   L  Q P+V+   +   +P  +++G+E DDI+ T     
Sbjct: 88  KPQIRIDMLPQYKAQRPPMDPALHAQFPVVKELLKTLDVPVCQLEGWEGDDILGTLARRG 147

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDIEHVIKKW--GIPPEKMVCLQ 183
           E EG+ + + + D+D+ QL +    +  T   V +  I     +     GI PE +    
Sbjct: 148 EAEGYQMLLFTGDRDMYQLSTENVKIVSTRKGVSDVSIMTPETVADLYAGITPELVPDFY 207

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS DNIPG+PGIG K AA L+ EYG+L+ ++ +A  +K  K  EN+  + + A LS
Sbjct: 208 GLKGDSSDNIPGVPGIGPKKAAALIVEYGSLDEVIAHADEVK-GKVGENLRAHIDDALLS 266

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           RK+  +RTD P+ I L+       +   ++    AL FT + +R+A      A+ +
Sbjct: 267 RKVATIRTDAPLDINLDDAKFPTFDPNDVVKAFSALGFTGMTSRLARMAGGSASGV 322


>gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 881

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/496 (38%), Positives = 302/496 (60%), Gaps = 28/496 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543
           D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P     D ++     
Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             S+ +  L   L   L  ++   ++  ++ P+  V+++MEI GI ++   LK +  E S
Sbjct: 455 RKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + T+   L ++   
Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573

Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +PI+++IL++R  +K+ STY        LP+H      ++HT Y    T TGRL+S++P
Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           N+QNIP + D G+ IR+AF+ S    ++ S+DYSQIELR+L+HI+    + + F++ +DI
Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R +A  +I  YF
Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER A+N PIQGSA
Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++   M+ A    +
Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSA----V 861

Query: 957 NLRVPLKVNIKVSNNW 972
           +L VPLKV       W
Sbjct: 862 HLDVPLKVESHYGPTW 877



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 164/312 (52%), Gaps = 11/312 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A    L R    DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 61  L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++EN+  N   +K+ K +EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +   + A LS++L  +  D P+T+ L  +     +  +L  F   +    L+ ++  +  
Sbjct: 237 INDKDNAFLSKQLATIDRDAPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVA 296

Query: 294 CDAANIEPVVLD 305
                +   VLD
Sbjct: 297 KPVQAVHFSVLD 308


>gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334]
          Length = 881

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/496 (38%), Positives = 302/496 (60%), Gaps = 28/496 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543
           D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P     D ++     
Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             S+ +  L   L   L  ++   ++  ++ P+  V+++MEI GI ++   LK +  E S
Sbjct: 455 RKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + T+   L ++   
Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573

Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +PI+++IL++R  +K+ STY        LP+H      ++HT Y    T TGRL+S++P
Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           N+QNIP + D G+ IR+AF+ S    ++ S+DYSQIELR+L+HI+    + + F++ +DI
Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R +A  +I  YF
Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER A+N PIQGSA
Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++   M+ A    +
Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSA----V 861

Query: 957 NLRVPLKVNIKVSNNW 972
           +L VPLKV       W
Sbjct: 862 HLDVPLKVESHYGPTW 877



 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 165/312 (52%), Gaps = 11/312 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A    L R    DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 61  L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++EN+  N   +K+ K +EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +   + A LS++L  +  DVP+T+ L  +     +  +L  F   +    L+ ++  +  
Sbjct: 237 INDKDNAFLSKQLATIDRDVPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVA 296

Query: 294 CDAANIEPVVLD 305
                +   VLD
Sbjct: 297 KPVQAVHFSVLD 308


>gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
 gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
          Length = 873

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 203/527 (38%), Positives = 311/527 (59%), Gaps = 18/527 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
            + F  +E   K G++IK        +G+ ++ +  D+ L SY+L+      +I S+ + 
Sbjct: 358 FQNFINDESIEKYGYDIKKCINAAKWHGLEIKNYVFDLQLASYILNPSLKD-EIRSVCEY 416

Query: 512 WLSYTR---KEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y     +E+  K  K  IP      + + +H I+ +  I  L      KL  E    
Sbjct: 417 YDYYDVLYDEEVYGKGAKKKIP----ETTAIADHLIKQAKAIYVLKDKAIEKLKQENQFD 472

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y+ ++ P+  +++ ME  G +ID+D+LK +  +  K +  LE+ I+ L+ + FN++SPK
Sbjct: 473 LYKDVEMPVAKILASMEYQGAKIDKDVLKDLENQFGKEIEVLEKEIHQLANKNFNIASPK 532

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG++LF  L  P+G KTKTG + T+   L ++    +PII  +L++R LSK+ STY   
Sbjct: 533 QLGEVLFEDLGLPNGKKTKTG-YSTSVDILNKLK-DVHPIINKVLQYRTLSKLYSTYIIG 590

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L   I     ++HT Y+ A T TGRL+S +PNLQNIP+KT  G+ IR+AFI P    L+S
Sbjct: 591 LQEQIF-VDGKIHTIYNQALTQTGRLSSTDPNLQNIPVKTAEGKLIRKAFI-PEYDYLVS 648

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            DYSQIELR+LAH+A +  L + F    DIHR  A+EIFGV+ ++V   MRR+AK +NF 
Sbjct: 649 FDYSQIELRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNFG 708

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           IIYG+S F LA Q+ +P +EA ++IKRYF  +P I  Y++    F ++NGYV T+  R+ 
Sbjct: 709 IIYGMSDFGLAEQVGVPVNEARNFIKRYFENYPEIKTYMDNNIEFCKKNGYVTTMLNRKR 768

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
              EIN      + + +R A+N+PIQGSAADI + AMI V +  + H L +KM+LQ+HDE
Sbjct: 769 FIREINEKNYMRQELGKRLAMNSPIQGSAADIIKVAMIKVDELFKKHNLKSKMILQVHDE 828

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+F+V +EE+    +++   M  A    + + V LK     + NW E
Sbjct: 829 LIFDVYKEELEEVMEVVAKGMTTA----VKMNVELKSEGSYAINWYE 871



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 182/343 (53%), Gaps = 27/343 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   L L+DG+S +YRA+YAT  +       DG+P NA+ GF NML  +L+ +     
Sbjct: 1   MDKMKELVLIDGNSLLYRAYYATAAMGNLMVNKDGIPTNAVYGFANMLENILKGN----- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +  V FDY   TFRN+++  YK  R   P+ L+ Q  ++R    A GI   EI+G+E 
Sbjct: 56  PEYIVVAFDYGKKTFRNDLFEVYKGTRSATPDELVCQFSMIREYLTAHGIHYQEIEGYEG 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I T   IA K+ F V+I+++DKD++QLV     +Y T K     EKI  E   + +G
Sbjct: 116 DDVIGTIASIASKKRFKVSIVTSDKDMLQLVDDNVSVYLTKKGVAELEKITPEKFKEMYG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRR 230
           + P++M  L+ L GD  DNIPGIPG+G KTA  LL++Y  +EN+  +   +K K   K R
Sbjct: 176 LIPDQMRDLKGLMGDKADNIPGIPGVGEKTALKLLKQYHTIENLNDHLDELKGKMGEKIR 235

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +NI    +   LS+K+  +  DVP+ + L+    +  +   L  F +      L+ R++ 
Sbjct: 236 DNI----DQGLLSKKIATIIKDVPMELDLDDFYYQGFDYNELAEFYRRYNMNSLLKRMSL 291

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
               +  N    V+D+   +   I     I RD++I    F S
Sbjct: 292 ---ANEDNKGETVIDVKIVDCLPI-----IKRDSSIVVGVFDS 326


>gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 930

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 195/494 (39%), Positives = 293/494 (59%), Gaps = 23/494 (4%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           F D  LM+Y+L+   + H I  +  ++                  D     Q  +   E 
Sbjct: 451 FYDTELMAYLLEPTEAPHSIEDMMNRYYG--------------QFDLTPYGQDWQAVCER 496

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             ++L L   L   L       +Y+ ++ P+  ++++ME  GI++D  +L ++ A I   
Sbjct: 497 GAILLDLISPLEDILQERNQWQLYKNIELPLAFILARMEFRGIKVDARVLTEMEANIDHR 556

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L  +   I++++GE+FNL+SPKQLG ILF KL+ P   KTKTG + T A+ LE ++  D 
Sbjct: 557 LSEISTKIFEIAGEEFNLNSPKQLGYILFEKLQLPVVKKTKTG-YSTDAKTLETLSH-DY 614

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            I K +L++RQL K+K+TY   L + I+K T ++HT Y+   T TGRL+S +PNLQNIPI
Sbjct: 615 EICKLLLDYRQLHKLKTTYLVGLKDLISKTTGKIHTTYNQTITATGRLSSTDPNLQNIPI 674

Query: 726 KTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           K + G+KIR+ F+   + +L ++ADYSQIELRILAH+++ T L Q F+   DIH   AA+
Sbjct: 675 KLEEGRKIRKGFVIQNSDQLFLAADYSQIELRILAHVSEDTNLIQAFQEQQDIHTQTAAQ 734

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F V   +V+ +MR HAK +NF I+YGIS + L+ QL I R +A  YI  Y  RF G+ E
Sbjct: 735 VFEVESTQVTREMRSHAKAVNFGIVYGISDYGLSRQLGISRKQAKTYIDNYLTRFSGVKE 794

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+++  N  + NGYVET++ RR +  +I+    +IR+  ER AIN PIQG+AADI + AM
Sbjct: 795 YMDQIVNQAKMNGYVETLYNRRRNLPDISHRNFNIRSAAERTAINTPIQGTAADIIKDAM 854

Query: 905 ISVHKSLEDH--KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           + V K LE         +LLQ+HDEL+ E+ +E ++  +  +   ME      I L+VPL
Sbjct: 855 VKVEKELEKQDLLDKAALLLQVHDELILEINKEVLSDVATKVKEIMENI----IELKVPL 910

Query: 963 KVNIKVSNNWQEEN 976
            V++K   NW + N
Sbjct: 911 TVDLKTGPNWYDLN 924



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/278 (37%), Positives = 161/278 (57%), Gaps = 18/278 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q  +   ++DG+S + RAFYA PLL  K  G   NAI GF  ML KL+Q+       ++ 
Sbjct: 7   QANDKFVVIDGNSLLNRAFYALPLLQTKQ-GFFTNAIYGFTTMLLKLVQDES----PNYL 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD  A TFR+  +P+YK +R K P+ + PQ+P+++   +A  I   E  G+EADD+I
Sbjct: 62  AVVFDTKAKTFRHHKFPEYKGHRDKAPDEMRPQMPMLKELLEAMNINYFEKDGYEADDLI 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
             +T IA++E     +++ DKDL+QL+   T +  T K     E  D E V +++G+  +
Sbjct: 122 GAFTKIAKQEDKETMVVTGDKDLLQLLDDKTTILLTKKGITQMESYDGEKVKEEFGVNVD 181

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ L+ALTGD  DN+PG+PG+G KTA  LL  YG+LE +  +   +   K +  + +  
Sbjct: 182 KLIDLKALTGDKSDNVPGVPGVGKKTALKLLNNYGDLEKLYKSLDGVG-GKLQSKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
           + A LS++LV        TI  E  ++E+ +  +L  F
Sbjct: 241 DKAFLSKELV--------TIDCEESLIENLDWNQLSKF 270


>gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084]
 gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084]
          Length = 922

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 181/489 (37%), Positives = 282/489 (57%), Gaps = 23/489 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ +  Y+LDS  +S  +A +  + +  +  E         P D++  + +      ++ 
Sbjct: 453 DVAVAGYLLDSDAASFSVADLVSREMDMSLPE---------PTDELPQAAL------DAV 497

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
               L  LL  +L  +    ++  L+ P++ V+ QME TG+  D   L + S E+   + 
Sbjct: 498 GAWALCPLLARRLEEDGSKGLFCDLEMPLLRVLLQMERTGLHADAGRLAEQSRELGSEID 557

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDN 665
            +   I   + E FN+ SP+QL  +LF     P+    +TK G + T A+ LE +   D 
Sbjct: 558 CMVATIKADADEDFNMDSPQQLSHVLFDVWGLPTFGLKRTKKGFYSTNAKTLEDLAQQDG 617

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            + + IL++R+ +KIKSTY D+LP  I +R  R+HT  +     TGRL+S  PNLQNIP 
Sbjct: 618 RV-RMILDYRERAKIKSTYLDALPADI-RRDGRIHTTLNQTVAATGRLSSSAPNLQNIPT 675

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +++LG ++R AF  P     ++ DYSQIELR+LAH++    L   F +  D H   AA +
Sbjct: 676 RSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGADFHAATAARV 735

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FGV +E+V+PQ+R  AK +NF I+YG   F LA+ LRI R+EA + I RYF  +PG+  Y
Sbjct: 736 FGVPVEEVTPQLRSRAKAVNFGIVYGQQAFGLASSLRIGRAEAQEMIDRYFEAYPGVRAY 795

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++++ +F R+ GY  T++GR+ H  +IN+    +R+  ER A+N P+QG+AADI + AM+
Sbjct: 796 LDQSVDFARKRGYAVTMYGRKRHIRDINARNFQLRSFAERTAMNHPMQGTAADIIKLAMV 855

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V + L    L +K++LQIHDEL FEVP++EI   S+++  +ME  C     LRVPL  +
Sbjct: 856 RVAERLRQEGLRSKLVLQIHDELDFEVPKDEIEVLSKLVKETMEGVC----ELRVPLLAD 911

Query: 966 IKVSNNWQE 974
           +    NW E
Sbjct: 912 VSYGANWAE 920



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 148/290 (51%), Gaps = 20/290 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S ++RAF+A        DG   NA+ GF NML KL+ +   + +       FD  
Sbjct: 41  VIDGNSLMHRAFHAIRQPMSAPDGRATNALFGFFNMLVKLVDSFSPDGVI----CAFDKG 96

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R ++ P YKA RP + E L  Q P+V+   +A  +P +E+ G+E DDI+ T     
Sbjct: 97  KPQVRIDMLPQYKAQRPPMDESLHEQFPMVKDLLRALDVPVVELAGWEGDDILGTLARRG 156

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKWGIPPEK 178
           E  G+ + + + D+D+ QL +    +  T K          E   D+ H     GI P+ 
Sbjct: 157 EAAGYEMLLFTGDRDMYQLATENVKIVSTKKGVSDVAIMTPESVDDLYH-----GITPDL 211

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +     L GD  DNIPG+PGIG K AA L+ +YG+L+ ++ +A  ++ K   E++  + +
Sbjct: 212 VPDFYGLKGDGSDNIPGVPGIGPKKAAALIVQYGSLDEVIAHADEVRGKM-GESLRAHVD 270

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            A LSRK+  +RTD PI    +       +   + +   AL FT +I R+
Sbjct: 271 DALLSRKVATIRTDAPIEFDFDDARFPTFDAAEVSAAFSALGFTGMIRRL 320


>gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
 gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
          Length = 846

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 174/413 (42%), Positives = 264/413 (63%), Gaps = 8/413 (1%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           E+L  +Y  ++KP+  V++QME  G+ +D   L+++S E+ K L  LE  I+ L+G  FN
Sbjct: 439 ERLWWLYREVEKPLAAVLAQMECRGVALDVPYLQELSEELGKELGYLEAEIHRLAGHPFN 498

Query: 623 LSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           ++S  QL  IL+ +L   +G K T TG+  T A  LE++    +PI+  IL++R+L+K+K
Sbjct: 499 VNSRDQLEAILYDELGLQAGGKKTTTGKRSTAASVLEEMRS-LHPIVGKILDYRELAKLK 557

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            TY D LP  I+ +T R+HT ++     TGRL+S +PNLQNIP++T++G+KIR+AF++  
Sbjct: 558 GTYLDPLPKLIHPKTGRLHTRFNQTVAATGRLSSSDPNLQNIPVRTEVGRKIRKAFVAEK 617

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+ ADYSQIELRILAH++    L +VF    DIH   AA +FG+  EKV PQ RR A
Sbjct: 618 GYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIHTQTAAWMFGLEPEKVDPQHRRAA 677

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KTINF ++YG+S  RL+ +L I  +EA+ +I+RYF  +P +  +IEKT    R+ GYVET
Sbjct: 678 KTINFGVLYGMSAHRLSGELGISYAEASGFIERYFASYPKVRLWIEKTLAEGRERGYVET 737

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGRR    ++ S   +I+   ER A N P+QG+AAD+ + AM+ ++  L++      ++
Sbjct: 738 MFGRRRFVADLESKNRAIKEAAERMAFNMPVQGTAADLMKLAMVKLYPKLKER--GAHLV 795

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDELV E PE      ++++   M+        L VPL+V + + +NW E
Sbjct: 796 LQVHDELVVEAPEPLAKEVAEVMCEVMQNVW----ELDVPLEVGVGIGHNWLE 844



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 154/286 (53%), Gaps = 7/286 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + +   + L+DG    YR ++A   L+    G  V AI GF   L KLL+      I   
Sbjct: 19  LPRPERVVLIDGHHLAYRNYFALERLT-TSKGEGVQAIFGFIRTLLKLLKEDGHCVI--- 74

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD P  TFR++ +  YKA R   P+ L  Q+  ++   +  G+  +E+ G+EADD+
Sbjct: 75  --VVFDPPTRTFRHDNFEAYKAGRAPTPDDLPGQIQKIKEIVEQMGLKRLEVPGYEADDV 132

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    AE+EG+ V I++ D+D  QL+S    ++       +    V +K+G+  E+ V
Sbjct: 133 IGTLAKKAEREGYEVRIVTGDRDAFQLLSDRVWVW-LPDGGVMGPNQVKEKYGVGVEQWV 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD  DNIPG  GIG K AA LL E+G+LEN+L +   +K ++ RE +    E  
Sbjct: 192 DYRALIGDPSDNIPGAKGIGPKGAAKLLAEWGSLENLLAHLEEVKPERLRELLRASLEDI 251

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           RLS +L  +RTD+PI +      + + N  RL   L+ALEF  ++ 
Sbjct: 252 RLSYELSKMRTDLPIDLDFPACHVREMNRERLRQELEALEFGSILR 297


>gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20]
          Length = 893

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 281/992 (28%), Positives = 472/992 (47%), Gaps = 128/992 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E+A LS++L  L         ++      C  P                         
Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFLSCAFP------------------------- 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                        +EN  + I+ E+     I     S+L D       E +P  L L+  
Sbjct: 267 -------------SENPLLKIKDELKEYGFI-----STLRDL------ENSPTPLILDNT 302

Query: 356 QKLSQYPINNDSYTK-----IVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAI 409
             L   P+++++  K     + NT+ +  +++KLE   +  F +++ D       K +A+
Sbjct: 303 PLLENAPLSDNAPKKSRLIVLENTEPLSAFLEKLENSNARIFMRLVLDK----EKKVLAL 358

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHN 468
           A    DQ      + E +F   S+   Q++                FF+  +H   IGH+
Sbjct: 359 AFLYEDQGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHVQIIGHD 401

Query: 469 IK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKS 523
           +K     +  +Y +S+     +D  +++++ +  +   D   + +++L       E +K 
Sbjct: 402 LKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--EVLKEYLKEELIPHETIKD 459

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            K+   ++K+    ++ +A++      +L        + E LL +   ++ P++ V+  M
Sbjct: 460 FKTKNKVEKLEQLDMELNALK------RLCEYFEKGGLEEGLLALARGVETPLMKVLMGM 513

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G +ID    K++  E    L  LE  I DL G  FNL+SPKQL +IL+ KL+ P   
Sbjct: 514 EFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQN- 572

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           K+++   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +
Sbjct: 573 KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 626

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762
               T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH +
Sbjct: 627 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFS 686

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L 
Sbjct: 687 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 743

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D        I+  
Sbjct: 744 IPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDHIKGN 802

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q
Sbjct: 803 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALKLQQ 861

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   +     P   L+VPL+ +  V+  W E
Sbjct: 862 EIQRILNDEVYP---LKVPLETSAFVAKRWNE 890


>gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
 gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
          Length = 870

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 187/486 (38%), Positives = 281/486 (57%), Gaps = 20/486 (4%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           +D ML+ Y+L+   SS+  A + +++       +      ++P D  S        ++ +
Sbjct: 400 DDTMLLGYLLNPLASSYAPARLCEEY------TVFPPATENVP-DGFSG------CVDTA 446

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
             +  L  +L  KL       +Y  ++ P+  V++QME  G  +D   +      + K L
Sbjct: 447 LAVRALAPVLLRKLTENGQEKLYREVELPLARVLAQMEHAGFLVDAAGIAAYGETLGKKL 506

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
            ++E+ I D  G  FNL+SPKQLG+ LF KL  P G KTKTG W T+A  L+++  G +P
Sbjct: 507 AAIEQEIVDAVGYPFNLNSPKQLGEALFVKLGLPHGKKTKTG-WSTSADVLDKLR-GAHP 564

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  +L +R+LSK+KSTY D L   I     R+H+ ++   T TGR++S EPNLQNIP++
Sbjct: 565 AIDALLGYRKLSKLKSTYTDGLLKVIAP-DGRIHSSFNQVETRTGRISSTEPNLQNIPVR 623

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           +  G+++RR F++ P   L+ ADYSQIELRILAHIA    +   F N  DIH + A+++F
Sbjct: 624 SAEGRELRRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTITASQVF 683

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G+  E V+P MR  AK +NF I+YGI  F L+  + +   EA  YIK Y  +F G+ +Y+
Sbjct: 684 GMPPEYVTPIMRSRAKAVNFGIVYGIGAFSLSQDIGVSVKEADSYIKGYLQKFSGVRDYM 743

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           E+      + GYVET+FGRR    E+ S   ++R   ER A N PIQG+AADI + AM+ 
Sbjct: 744 ERVIREAHEKGYVETLFGRRRVLPELLSSNHNMRAFGERVARNTPIQGTAADIIKIAMVR 803

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V   LE  ++ + ++LQ+HDEL+ E PE+E   A QI+   ME A     +LRV L+ ++
Sbjct: 804 VRDRLEREQMQSALILQVHDELIVEAPEDEAARAGQILEEEMEGAA----SLRVRLEADV 859

Query: 967 KVSNNW 972
              + W
Sbjct: 860 HTGHTW 865



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 160/302 (52%), Gaps = 12/302 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S I RAFY   LLS K DG   NAI GF N+L K    +R E+     AV FD
Sbjct: 3   LLVLDGNSIINRAFYGIRLLSTK-DGQYTNAIVGFLNILNK----ARDETAPDAVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            PA TFR+  Y  YKA R K+P+ L  QLP+++   +  G+P +E +GFEADDI+ T  Y
Sbjct: 58  LPAPTFRHLSYDGYKAGRKKMPDELASQLPVLKDLLRYMGLPILEAEGFEADDILGTEAY 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKI----DIEHVIKKWGIPPEKMV 180
              K G A  +++ D+D  QLV P  T  L  T   + +    D   + + +G+ P +M+
Sbjct: 118 ACAKRGDACVLLTGDRDSFQLVGPSATVRLASTKAGQPVTTLYDEAAIRETYGVEPRQMI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN-ASRIKQKKRRENILEYAET 239
            ++AL GD+ DNIPG+ G+G KTA  L++ YG L+ +  +      +   R  +    E+
Sbjct: 178 DVKALMGDTSDNIPGVAGVGEKTALSLIRTYGTLDEVYAHLEDESIRPALRAKLRAGKES 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +SRKL  + TD P+      L     +   L   +  LE  KL+ ++  T    A   
Sbjct: 238 AYMSRKLAKISTDAPVETDPGALAGAKGDSHALALLMARLELFKLMEKMGVTGGAPAEAD 297

Query: 300 EP 301
            P
Sbjct: 298 AP 299


>gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
 gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
          Length = 881

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 193/496 (38%), Positives = 301/496 (60%), Gaps = 28/496 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543
           D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P     D ++     
Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             S+ +  L   L   L  +    ++  ++ P+  V+++MEI GI ++   LK +  E S
Sbjct: 455 RKSDALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + T+   L ++   
Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573

Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +PI+++IL++R  +K+ STY        LP+H      ++HT Y    T TGRL+S++P
Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           N+QNIP + D G+ IR+AF+ S    ++ S+DYSQIELR+L+HI+    + + F++ +DI
Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R +A  +I  YF
Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER A+N PIQGSA
Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++   M+ A    +
Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELVPKVMDSA----V 861

Query: 957 NLRVPLKVNIKVSNNW 972
           +L VPLKV       W
Sbjct: 862 HLDVPLKVESHYGPTW 877



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 164/312 (52%), Gaps = 11/312 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A    L R    DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 61  L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++EN+  N   +K+ K +EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +   + A LS++L  +  D P+T+ L  +     +  +L  F   +    L+ ++  +  
Sbjct: 237 INDKDNAFLSKQLATIDRDAPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVA 296

Query: 294 CDAANIEPVVLD 305
                +   VLD
Sbjct: 297 KPVQAVHFSVLD 308


>gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32]
          Length = 893

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 284/998 (28%), Positives = 470/998 (47%), Gaps = 140/998 (14%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E    ++  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTHIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
              +A LS++L  L  +      ++      C  P                         
Sbjct: 237 DKGSAFLSKELATLEREC-----IKEFDFSSCAFP------------------------- 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                        +EN  + I+ E+     I     S+L D       E +P  L  +  
Sbjct: 267 -------------SENPLLKIKDELKEYGFI-----STLRDL------ENSPTPLISDNA 302

Query: 356 QKLSQYPINNDSYTK-----IVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAI 409
             L   P ++++  K     + NT+ +  +++KL+   +  F +++ D       K +A+
Sbjct: 303 PLLENAPASDNAPKKSCMIVLENTEPLSAFLEKLKKTNARIFMRLVLDK----EKKVLAL 358

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHN 468
           A    DQ    S + E +F   S+   Q++                FF+  +H   IGH+
Sbjct: 359 AFLYEDQGYFLSLE-EALFSPFSLEFLQNA----------------FFKMLQHACIIGHD 401

Query: 469 IK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS-- 523
           +K     +   Y + +     +D  +++++ +  +   D              E+LK   
Sbjct: 402 LKPLLSFLKANYQVPLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYL 447

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYERLDKPMI 577
           ++  IP +KI D + +  A ++  + L+L  L R     EK      LL +   ++ P +
Sbjct: 448 KEELIPHEKIKDFKTKSKAEKSEQLSLELNALKRLCEYFEKGGLEEGLLALAREVETPFV 507

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+  ME  G +ID    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL
Sbjct: 508 KVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKL 567

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           + P   K+++   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  
Sbjct: 568 ELPKN-KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDD 620

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELR 756
           ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR
Sbjct: 621 KIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELR 680

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH ++   L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +
Sbjct: 681 LLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKK 737

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L IP +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D      
Sbjct: 738 LSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGAN 796

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             I+    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+ 
Sbjct: 797 DYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKN 855

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                Q I   +     P   LRVPL+ +  ++  W E
Sbjct: 856 ALELQQEIQRILNDEVYP---LRVPLETSAFIAKRWNE 890


>gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 879

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 184/490 (37%), Positives = 301/490 (61%), Gaps = 11/490 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D+ L +Y+++  +S+++   IA+ + S    +RKE++  +   +    +SD+  +    E
Sbjct: 396 DVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSRKELIDKKHPMVTDGVLSDAGKKIMGYE 455

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            + +  +    L  KL   +++ +Y  ++ P +  +  ME+ GI +D   LK+   ++  
Sbjct: 456 -AYISREAIQPLSDKLTELEMMDLYREIEIPTMFALHDMEVRGIHVDSKALKEYGDQLVG 514

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  L+E+IY  +GE+FN++SPKQLG +LF  +K     KTKTG + T+ + LE+I    
Sbjct: 515 RIEELQESIYKEAGEEFNINSPKQLGVVLFEHMKLEGAKKTKTG-YSTSVEVLEKIEHL- 572

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            PII  +LE+RQL+K+KSTYAD L N I +  QR+H  ++   T TGR++S EPNLQNIP
Sbjct: 573 YPIISMVLEYRQLTKLKSTYADGLANFI-QDDQRIHGKFNQTITATGRISSTEPNLQNIP 631

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           I+ +LG+ IR+ F+       + ADYSQIELR+LAH+++   L   +E + DIH   A+E
Sbjct: 632 IRMELGRAIRKVFLPEDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASE 691

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FG+ +++V+   RR AK +NF IIYG+S F L+  L+I R +A +YI RYF  +P + E
Sbjct: 692 VFGIPMDEVTSTQRRDAKAVNFGIIYGLSAFGLSQDLKISRKQAQEYIDRYFAMYPRVKE 751

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +++      + +GYV+T+F R     E+ S     RN  ER A+N+PIQG+AADI + AM
Sbjct: 752 FLDGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQRNFGERVAMNSPIQGTAADIIKIAM 811

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           + V+  L++ ++ +++LLQIHDEL+ E   +E     +I+ + M  A    ++LRVPL +
Sbjct: 812 VRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNA----VSLRVPLNI 867

Query: 965 NIKVSNNWQE 974
           +I+   +W E
Sbjct: 868 DIEQGASWYE 877



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 170/288 (59%), Gaps = 13/288 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S + RAFY  P ++    GL  NAI GF N+++K L+    E   +H AV FD
Sbjct: 5   LLLIDGNSILNRAFYGLPDMTNSQ-GLHTNAILGFLNIMFKFLE----EENPTHLAVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++++ DYK  R  +P+ L  Q+P++R   +A  IP +  +G+EADD++ T + 
Sbjct: 60  LKAPTFRHKMFADYKGTRKGMPDELQEQVPVIREVLKAMNIPLMMEEGYEADDLLGTMSV 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           + E+ GF V I+S D+DL+QL +       P T    TV E+  + + V++K+ + P++ 
Sbjct: 120 LGEQAGFEVKIVSGDRDLLQLATKKVQIRIPKTNRAGTVVEDYYE-DDVLEKYQVTPKEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPGIPGIG KTA  L++E+ ++EN   +   +K  + + N+ EY + 
Sbjct: 179 IDVKALMGDASDNIPGIPGIGEKTATKLIKEFQSIENAYAHIDEVKPNRAKNNLQEYYDQ 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
             +S++L  ++ D PI I  +   L D         LK LEF  ++ R
Sbjct: 239 GVMSKELATIKVDSPIDISFDDAKLGDLYTKEAYHMLKELEFKAILKR 286


>gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564]
 gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564]
          Length = 877

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 301/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++LHR+G+ ++    D  L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKAKVLLHRFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLIDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       +  EH      ++++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKALP----EREKFLEHLARKLAILVETEPVLLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGITVKKETLLEMQAENDLVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERSEDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/285 (39%), Positives = 153/285 (53%), Gaps = 11/285 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R  +  GL  NAI GF  ML  LL+        SH  V
Sbjct: 6   LLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHILV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AE++GF +TI+S DKDL+QL    T +  + K     E    +++++K GI P + 
Sbjct: 122 LDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITPTQF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K ++N++   E 
Sbjct: 182 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKDNLINDKEQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           A LS+ L  + T  PI I L+ L+    +   L  F   + F +L
Sbjct: 242 AFLSKTLATIDTKAPIEIGLKDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 627

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 199/510 (39%), Positives = 307/510 (60%), Gaps = 14/510 (2%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKE--ILKSRK 525
           I Y+  VL   GI+ +     M+++Y L S ++  D I  I +    Y++ E    K+  
Sbjct: 126 ISYNFKVLLNLGINFKSMYMDMMIAYHLISSQTKIDPIIPITE----YSKLEPKDFKTAF 181

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             I I+ I+     ++    S  IL ++  L   L  E L  +    + P+I V+S ME 
Sbjct: 182 GKINIELITAQDFSKYLSATSIGILAIYDELNYLLKKEDLYKILMENEMPLIQVLSLMER 241

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KT
Sbjct: 242 KGIEIDIQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 301

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T    LE +      I + +L++R+L+K+K+TY D+LP  +++ + R+HT ++ 
Sbjct: 302 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQ 359

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K  
Sbjct: 360 IGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDE 419

Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + +    D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP
Sbjct: 420 NLIEAYREEKDLHDLTARRIFNLSDTETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 479

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             +A++YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  E
Sbjct: 480 VKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 539

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N  IQG+AA++ ++ M+ V+  L+D +  T +LLQ+HDEL+FEV E  +   S+I+
Sbjct: 540 RMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIT-LLLQVHDELIFEVEENSVEKYSEIL 598

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M+     +    V L +NI +  NW E
Sbjct: 599 ADIMKNTVQLE---DVKLNININIGKNWAE 625


>gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
 gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
          Length = 886

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 310/515 (60%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL-- 521
           ++ K  K++L   G+ +     D  L +Y+L S    +++A++A+ +  +     E++  
Sbjct: 380 YDFKRSKVLLSHLGLDLPAASYDARLANYLL-STVEDNEMATLARLYTTIPLDTDEVVYG 438

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P DK   + +  H      V+L    ++  KL   +   +Y  ++ P+ +V++
Sbjct: 439 KGVKRAVP-DK---AVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLA 494

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI ++QD L++++ +    +  L + IY+++GE FN++SPKQLG ILF K++ P 
Sbjct: 495 KMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVFNINSPKQLGVILFEKMQLPL 554

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     R+HT
Sbjct: 555 HLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-MADGRIHT 613

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 614 RYLQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAH 673

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F+   DIH   A  +FG+   E V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 674 ISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDFGLSN 733

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L IPR +A  YI  YF R+PGI +Y+E+     +  GYVET+F RR    +INS + ++
Sbjct: 734 NLGIPRKQAKAYIDTYFERYPGIKDYMERVVREAKDKGYVETLFKRRRQLPDINSRQFNV 793

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ ++L      TKMLLQ+HDE+V EVP  E+  
Sbjct: 794 RSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAA 853

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    +NL VPL+V+     +W E
Sbjct: 854 VKELVKETMESA----VNLAVPLRVDESAGKSWYE 884



 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 166/301 (55%), Gaps = 17/301 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 7   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 62

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E++ DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 63  --PTHVLVAFDAGKTTFRTELFADYKAGRAKTPDEFREQFPYIRDMLGALGIAFYELEHY 120

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 121 EADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLM 180

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
            K G+ PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  +    K  K 
Sbjct: 181 DKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEGIYQHVDSFKPSKM 240

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +EN+L   E A LS+ L  + T  PI I LE ++ +  +  RL  F   ++F +L N +A
Sbjct: 241 KENLLHDKEQAFLSKTLATINTSAPIAIGLEDIVYQGPDLDRLSQFYDEMDFVQLKNALA 300

Query: 290 T 290
           +
Sbjct: 301 S 301


>gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
          Length = 875

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 300/524 (57%), Gaps = 15/524 (2%)

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFED-IMLMSYVLDSGRSSHDIASIAQ-KWLS 514
            +NE   K  ++ K  K++  R  I ++G E  +ML SY+LD      D+A  AQ + + 
Sbjct: 359 LQNEDTKKYVYDAKETKVLFSRLDIDIKGIEHCVMLASYLLDPALKIIDVAQSAQMQGIY 418

Query: 515 YTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           Y   + +   K  K  IP      + + +H     N I ++  L   KL   K L +   
Sbjct: 419 YVESDEMIFGKGAKMHIP----ERTNLFKHIASEVNAIHEVSALQIRKLNELKQLELLTA 474

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           L+ P+  V++ ME+ GI++++  L+++  EI   L  L   I++ +G  FN++SPKQLG 
Sbjct: 475 LELPLSLVLADMEMQGIKVNRQTLQEMQQEIQSRLDELITRIHEHAGSTFNINSPKQLGV 534

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +LF  LK  S  K KT    +TA D+ +   G +PII++IL +R LSK++STY + L   
Sbjct: 535 VLFEDLKLDSPKKKKTKTGYSTAVDVLESLAGKHPIIEDILLYRTLSKLQSTYVEGLQKL 594

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750
           I     ++HT ++     TGRL+S++PNLQNIP++ D G+KIR+AF+ S P   + +ADY
Sbjct: 595 IGD-DDKIHTRFNQVIAQTGRLSSIDPNLQNIPVRLDEGRKIRKAFVPSEPNSVIFAADY 653

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LAHI     + + F   +DIH   A ++F V  E+V+  MRR AK +NF I+Y
Sbjct: 654 SQIELRVLAHITGDKGMLEAFNQGIDIHTKTAMKVFNVEREEVTSDMRRQAKAVNFGIVY 713

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS + L+  L I R +A  +I  Y   FP +  Y+       +Q GYV T+  RR +  
Sbjct: 714 GISDYGLSQSLGITRKDAQAFIDNYLESFPDVKAYMHDIIQEAKQQGYVTTLLNRRRYIP 773

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +I S   ++R   ER A+N PIQGSAADI + AM+  ++ +++     K+LLQ+HDEL+F
Sbjct: 774 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVHYNEQVKETDFKAKLLLQVHDELIF 833

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EVP++E+   S  + H ME A    + L+VPL+V      +W E
Sbjct: 834 EVPKDELEAFSLFVKHVMENA----LELKVPLEVEYDSGESWYE 873



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/321 (38%), Positives = 173/321 (53%), Gaps = 14/321 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLL +    L  NAI GF  +L KL+    KE   +HF + 
Sbjct: 3   DKLILIDGNSIAFRAFYALPLL-KNQSNLHTNAIYGFTLILDKLI----KEEQPTHFLIA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y DYK  R K P  L  Q P +R   +A+ I   E   +EADDII T 
Sbjct: 58  FDAGKTTFRHEMYKDYKGGRQKTPSELSEQFPYIRKLAEAYQIKHYEQDMYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              A +      I++ D+DL QL S    +Y T K     +K   + + +++G  PEK++
Sbjct: 118 AKQATENKLETIIVTGDRDLTQLASDYVTIYYTKKGVTDIDKYTPQFIQEQYGFEPEKII 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD  DNIPG+PG+G KTA  LL EYG +E +L N   IK KK  EN+  + + A
Sbjct: 178 DLKGLMGDKSDNIPGVPGVGEKTALKLLHEYGTVEAVLDNLEHIKGKKLNENLTNHKDDA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANI 299
            +S++L  + TD PI + L   +L + +  + I+  + L+F  KL N  A T   +   I
Sbjct: 238 LMSKQLAKINTDAPIAVNLNDTLLPEKDESKKIALFQELDFKQKLDNIDAETQVTEKKTI 297

Query: 300 EPV----VLDINTTENKGIAI 316
           E        D +T E+  I I
Sbjct: 298 EISNQFHTFDFSTIESMAIRI 318


>gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
 gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
          Length = 893

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 284/996 (28%), Positives = 473/996 (47%), Gaps = 136/996 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSTKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E    ++  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
              +A LS++L  L         ++      C  P                         
Sbjct: 237 DKGSAFLSKELATLERGC-----IKEFDFLSCAFP------------------------- 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                        +EN  + I+ E+     I     S+L D       E +P  L L+  
Sbjct: 267 -------------SENPLLKIKDELKEYGFI-----STLRDL------ENSPTPLILDNT 302

Query: 356 QKLSQYPINNDSYTK-----IVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAI 409
             L   P ++++  K     + NT+ +  ++++LE   +  F +++ D       K +A+
Sbjct: 303 PLLENTPASDNAPKKSCMIVLENTEPLSAFLERLENSNARVFMRLVLDK----EKKVLAL 358

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHN 468
           A    DQ      + E +F   S+   Q++                FF+  +H   IGH+
Sbjct: 359 AFLFEDQGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHD 401

Query: 469 IK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           +K     +  +Y +S+     +D  +++++ +  +   D   + +++L          ++
Sbjct: 402 LKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--GVLKEYL----------KE 449

Query: 526 SSIPIDKISD----SQVQ--EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
             IP +KI D    S+V+  E      N + +L        + E LL +   ++ P + V
Sbjct: 450 ELIPHEKIKDFKTKSKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAREVETPFMKV 509

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +  ME  G +ID    K++  E    L  LE  I DL G  FNL+SPKQL +IL+ KL+ 
Sbjct: 510 LMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLEL 569

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   K+++   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++
Sbjct: 570 PQN-KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKI 622

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRIL 758
           HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+L
Sbjct: 623 HTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 682

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH ++   L + F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+
Sbjct: 683 AHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLS 739

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L IP +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D + +    
Sbjct: 740 ETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGA-NDH 798

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           I+    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+   
Sbjct: 799 IKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAP 857

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              Q I   +     P   LRVPL+ +  V+  W E
Sbjct: 858 ELQQEIQRILNDEVYP---LRVPLETSAFVAKRWNE 890


>gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51]
          Length = 885

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 287/992 (28%), Positives = 463/992 (46%), Gaps = 134/992 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 5   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E    YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 62  IVFAL--ESQTKTKRAEKLGQYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 120 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 174

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 175 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E+A LS++L  L         ++      C  P     LK  +  K    ++T  D +
Sbjct: 235 DKESAFLSKELATLERGC-----IKEFDFSSCTFPSENPLLKIKDELKEYGFISTLRDLE 289

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +   P++LD     N  +        D+T K S    L + T        P   FLE+L
Sbjct: 290 NSPT-PLILD-----NAPLL-------DSTPKKSCMIVLENTT--------PLSAFLEKL 328

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K      N   + ++V  K+                            K +A+A    D
Sbjct: 329 KK-----TNARIFMRLVLDKE---------------------------KKVLALAFLYED 356

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473
           Q      + E +F   S+   Q++                FF+  +H   IGH++K    
Sbjct: 357 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLLS 399

Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIP 529
            +  +Y +S+     +D  +++++ +  +   D              E+LK   ++  IP
Sbjct: 400 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEEWIP 445

Query: 530 IDKISDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            +KI D + +  A +        N + +L        + E LL +   ++ P + V+  M
Sbjct: 446 HEKIKDFKTKSKAGKLEQLDRELNALRRLCEYFEKGGLEEGLLALAREVETPFMKVLMGM 505

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G +ID    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P   
Sbjct: 506 EFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGADFNLNSPKQLSEILYEKLELPKN- 564

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           K+ +   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +
Sbjct: 565 KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 618

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762
               T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH +
Sbjct: 619 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFS 678

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L 
Sbjct: 679 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 735

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP SEA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D        I+  
Sbjct: 736 IPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYIKGN 794

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q
Sbjct: 795 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQQ 853

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   +     P   LRVPL+ +  ++  W E
Sbjct: 854 EIQRILNDEVYP---LRVPLETSAFIAKRWNE 882


>gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 878

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 176/406 (43%), Positives = 261/406 (64%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +++P+ +V+++MEI GI + +  L+++ A     +  L + IYDL+G +FN++SPKQLG+
Sbjct: 477 MEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEFNINSPKQLGE 536

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +LF K++ P+    KT    +TA D+ +     +PI+  ILE+RQ++K++STY   L + 
Sbjct: 537 LLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDF 596

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I  +  ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+   L+S+D
Sbjct: 597 I-LQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PETEDEVLLSSD 654

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F    DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 655 YSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGI 714

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + LA  L IPR  A  YI+ YF R+PGI  Y+E+     +  GYVET+F RR  
Sbjct: 715 VYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRE 774

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   +IR   ER AIN+PIQGSAADI + AMI++ K+L D +  TKMLLQ+HDE+
Sbjct: 775 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEI 834

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +VP++E+     ++  +ME A    I+L VPL  +      W E
Sbjct: 835 ILQVPKDELEAVKTLVKETMESA----IDLSVPLIADENAGQTWYE 876



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 174/326 (53%), Gaps = 23/326 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ +  L L+DGSS  YRAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MENKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R    A GI   +++ 
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLSALGITFYDLEN 113

Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           +EADDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 114 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLM 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P++ + L+AL GD  DNIPG+  IG KT   LL EYG+LE +  N   +K+ K 
Sbjct: 174 EKMGITPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGVYENIDGMKKSKM 233

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +EN++   E A LS+ L  +    PITI L+ +  +  +  +L+ F   + F +  + + 
Sbjct: 234 KENLINDKEQAFLSKTLATINISAPITIGLDDINYQGPDLDKLVPFYDEMGFKQFKDNLG 293

Query: 290 T-----TYDCDAANIEPVVLDINTTE 310
                  +D   A ++ +  D+ T +
Sbjct: 294 APKKQEKFDVSYAEVDSLSADMFTDD 319


>gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300]
 gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300]
          Length = 889

 Score =  337 bits (864), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 211/529 (39%), Positives = 312/529 (58%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
           LK+F E    LK+ ++ K  K++L+R  ++++    D  L  Y+L S   +++I++IA  
Sbjct: 371 LKEFLEKTP-LKV-YDFKKAKVLLNRLDLNLQAPAFDSRLAKYLL-STVENNEISTIANL 427

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q +L+       K  K +IP       +  EH      V+++   +L  KL     L 
Sbjct: 428 YGQTYLADDEIFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+GEKFN++SPK
Sbjct: 484 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENELIIEKLTQEIYELAGEKFNINSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY   
Sbjct: 544 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 603

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 604 LQDWI-LDDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F L+  L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F R
Sbjct: 723 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 782

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+H
Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+     ++  +ME+A    I L VPL  +      W E
Sbjct: 843 DEIVLEVPKSELAAIKVLVKQTMEEA----IQLSVPLIADENEGATWYE 887



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/285 (39%), Positives = 153/285 (53%), Gaps = 11/285 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        SH  V
Sbjct: 18  LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 73

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 74  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 133

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K GI P + 
Sbjct: 134 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITPAQF 193

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 253

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           A LS+ L  + T+ PI I L+ L+    +   L  F   + F +L
Sbjct: 254 AFLSKTLATIETNAPIEIGLDDLLYSGSDVENLGKFYDEMGFKQL 298


>gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597]
 gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597]
          Length = 877

 Score =  337 bits (864), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 301/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++LHR G+ ++    D  L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKAKVLLHRLGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P       +  EH     +V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKALP----EREKFLEHLARKLSVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++  E    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGITVKKETLLEMQTENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    +++++K GI P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 TQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIEIGLEDLVYSGPDIENLGKFYDEMGFKQL 286


>gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
 gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
          Length = 878

 Score =  337 bits (863), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 176/406 (43%), Positives = 261/406 (64%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +++P+ +V+++MEI GI + +  L+++ A     +  L + IYDL+G +FN++SPKQLG+
Sbjct: 477 MEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEFNINSPKQLGE 536

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +LF K++ P+    KT    +TA D+ +     +PI+  ILE+RQ++K++STY   L + 
Sbjct: 537 LLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDF 596

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I  +  ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+   L+S+D
Sbjct: 597 I-LQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PETEDEVLLSSD 654

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F    DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 655 YSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGI 714

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + LA  L IPR  A  YI+ YF R+PGI  Y+E+     +  GYVET+F RR  
Sbjct: 715 VYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRE 774

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   +IR   ER AIN+PIQGSAADI + AMI++ K+L D +  TKMLLQ+HDE+
Sbjct: 775 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEI 834

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +VP++E+     ++  +ME A    I+L VPL  +      W E
Sbjct: 835 ILQVPKDELEAVKTLVKETMESA----IDLSVPLIADENAGQTWYE 876



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/298 (39%), Positives = 163/298 (54%), Gaps = 24/298 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ +  L L+DGSS  YRAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MENKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R    A GI   +++ 
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLSALGITFYDLEN 113

Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           +EADDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 114 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLM 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P++ + L+AL GD  DNIPG+  IG KT   LL EYG+LE +  N   +K+ K 
Sbjct: 174 EKIGITPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGVYENIDGMKKSKM 233

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284
           +EN++   E A LS+ L  +    PITI L+ +   D  GP   +L+ F   + F + 
Sbjct: 234 KENLINDKEQAFLSKTLATINISAPITIGLDDI---DYQGPDLDKLVPFYDEMGFKQF 288


>gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
 gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
          Length = 857

 Score =  337 bits (863), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 165/424 (38%), Positives = 268/424 (63%), Gaps = 7/424 (1%)

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           I+ L   L+ +L   ++L ++  ++ P+ +V++ ME  G++ D D +++    + K++ +
Sbjct: 436 IMPLAENLKLRLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTDGIREFGKGLKKDIEA 495

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           L   IYDL+G +FN++SPKQLG++LF KL  P+  KTK+G + T A+ LE++    +PI+
Sbjct: 496 LTSQIYDLAGGEFNIASPKQLGEVLFEKLGLPAKKKTKSG-YSTNAEVLEEL-ADKHPIV 553

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
             +LE+R L+K+ STY DSL   + +   RV + +    T TGR++S EPN+QNIP++ +
Sbjct: 554 GLVLEYRTLTKLNSTYVDSLLKEV-EADGRVRSVFKQTETRTGRISSTEPNMQNIPVRKE 612

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           +G+ +R+ F++      + ADYSQIELR+LA +     + + F +  DIH M A+++FG+
Sbjct: 613 IGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIHTMTASQVFGI 672

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
             + V P+MR  AK +NF IIYGI  F L+  + +   EA  YIK Y   FP + E+++K
Sbjct: 673 PADAVLPEMRSAAKAVNFGIIYGIGAFSLSKDIGVSVKEAKQYIKNYLDNFPKVSEFMDK 732

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
           T     +NGYV TIFGRR +  E+ +    ++   +RAA+NAPIQG+AADI + AM+ V+
Sbjct: 733 TVEDGIKNGYVTTIFGRRRYIPELAATNKVMQAFGKRAAMNAPIQGAAADIIKMAMVKVY 792

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           K L+  KL  +++LQ+HDEL+ EV  ++   A  I+   MEKA    +N  VP++V++  
Sbjct: 793 KRLKAEKLDARLILQVHDELIIEVTPDDKEKAKAILKEEMEKA----VNFTVPMEVSVGE 848

Query: 969 SNNW 972
             +W
Sbjct: 849 GESW 852



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 125/214 (58%), Gaps = 7/214 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L  +DG+S + RAFY   LL+    G+P NAI GF N+  K L+  + + +A    V F
Sbjct: 2   RLLCIDGNSIMNRAFYGIRLLTNSK-GIPTNAITGFMNIYMKELEEVQPDCVA----VAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++    YKANR  +P+ L  Q+PL++      GI  +E +G+EADDI+ T +
Sbjct: 57  DLRAPTFRHKASAAYKANRKGMPDELAQQMPLIKQLLGLLGIKTVECEGYEADDILGTLS 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQ 183
             A   G    I++ D+D  QLVS   T      KE KI     +++++G+ P +M+ ++
Sbjct: 117 KAAADSGNECFILTGDRDSFQLVSDKVTVRLAGTKETKIYTPARIMEEYGVTPRQMIEVK 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
           AL GD+ DNI G+ GIG KTA  L+Q+ G++E +
Sbjct: 177 ALMGDTSDNISGVKGIGEKTALNLIQQAGSVEAL 210


>gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321]
 gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321]
          Length = 877

 Score =  337 bits (863), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 301/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L+ +G+ ++    D  L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKAKVLLNHFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLARKLAVLIETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKTYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+T 
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELTE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNATGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    E++++K GI P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKMGITP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 TQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I L+ L+    +   L  F   + F +L
Sbjct: 239 REQAFLSKTLATIDTKAPIEIGLQDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 899

 Score =  337 bits (863), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 309/515 (60%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL-- 521
           ++ K  K++L   G+ +     D  L +Y+L S    +++A++A+ +  +     E++  
Sbjct: 393 YDFKRSKVLLSHLGLDLPAASYDARLANYLL-STVEDNEMATLARLYTTIPLDTDEVVYG 451

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P DK   + +  H      V+L    ++  KL   +   +Y  ++ P+ +V++
Sbjct: 452 KGVKRAVP-DK---AVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLA 507

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI ++QD L++++ +    +  L + IY+++GE FN++SPKQLG ILF K++ P 
Sbjct: 508 KMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVFNINSPKQLGVILFEKMQLPL 567

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     R+HT
Sbjct: 568 HLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMA-DGRIHT 626

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 627 RYLQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAH 686

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F+   DIH   A  +FG+   E V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 687 ISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDFGLSN 746

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L IPR +A  YI  YF R+PGI  Y+E+     +  GYVET+F RR    +INS + ++
Sbjct: 747 NLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQLPDINSRQFNL 806

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ ++L      TKMLLQ+HDE+V EVP  E+  
Sbjct: 807 RSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPSHELAA 866

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    +NL VPL+V+     +W E
Sbjct: 867 VKELVKETMESA----VNLAVPLRVDESAGKSWYE 897



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 167/301 (55%), Gaps = 17/301 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 20  MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 75

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E++ DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 76  --PTHVLVAFDAGKTTFRTELFADYKAGRAKTPDEFREQFPYIRDMLGALGIAFYELEHY 133

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 134 EADDIIGTLDKMAERTELPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLM 193

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
            K G+ PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  +    K  K 
Sbjct: 194 DKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEGIYQHVDSFKPSKM 253

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +EN+L   E A LS+ L  + T  PITI LE ++ +  +  RL  F   ++F +L N +A
Sbjct: 254 KENLLHDKEQAFLSKTLATINTSAPITIGLEDIVYQGPDLDRLSQFYDEMDFVQLKNALA 313

Query: 290 T 290
           +
Sbjct: 314 S 314


>gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
 gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
          Length = 893

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 281/992 (28%), Positives = 470/992 (47%), Gaps = 128/992 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAERLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E+A LS++L  L+        ++      C  P                         
Sbjct: 237 DKESAFLSKELATLQRGC-----IKEFDFLSCAFP------------------------- 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                        +EN  + I+ E+     I     S+L D       E +P  L L+  
Sbjct: 267 -------------SENPLLKIKDELKEYGFI-----STLRDL------ENSPTPLILDNT 302

Query: 356 QKLSQYPINNDSYTK-----IVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAI 409
             L   P+ +++  K     + NT  +  +++KLE   +  F +++ D       K +A+
Sbjct: 303 PLLENAPLLDNAPKKSCMIVLENTAPLSAFLEKLENSNARIFMRLVLDK----EKKVLAL 358

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHN 468
           A    DQ      + E +F   S+   Q++                FF+  +H   IGH+
Sbjct: 359 AFLYEDQGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHD 401

Query: 469 IK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKS 523
           +K     +  +Y +S+     +D  +++++ +  +   D   + +++L       E +K 
Sbjct: 402 LKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--EVVREYLKEELIPHETIKD 459

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            K+   ++K+    ++ +A++      +L        + E LL +   ++ P + V+  M
Sbjct: 460 FKTKSRVEKLEQLDMELNALK------RLCEYFEKGGLEEGLLALAREVETPFMKVLMGM 513

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G +ID    K++  E    L  LE  I DL G  FNL+SPKQL +IL+ KL+ P   
Sbjct: 514 EFQGFKIDAPYFKRLEQEFKDELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQN- 572

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           K+++   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +
Sbjct: 573 KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 626

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762
               T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH +
Sbjct: 627 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFS 686

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L 
Sbjct: 687 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 743

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D        I+  
Sbjct: 744 IPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDHIKGN 802

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q
Sbjct: 803 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQQ 861

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   +     P   LRVPL+ +  ++  W E
Sbjct: 862 EIQRILNDEVYP---LRVPLETSAFMAKRWNE 890


>gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
 gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
          Length = 878

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 175/406 (43%), Positives = 262/406 (64%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +++P+ +V+++MEI GI + ++ L+++       + +L + IYDL+G +FN++SPKQLG+
Sbjct: 477 MEQPLANVLAKMEIAGISVKKETLQEMEKANQAAIDNLTQEIYDLAGMEFNINSPKQLGE 536

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +LF K++ P+    KT    +TA D+ +     +PI+  ILE+RQ++K++STY   L + 
Sbjct: 537 LLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDF 596

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I K   ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T    L+S+D
Sbjct: 597 ILK-DGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PETADEVLLSSD 654

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F    DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 655 YSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 714

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + LA  L IPR  A  YI+ YF R+PGI +Y+E+     +  GYVET+F RR  
Sbjct: 715 VYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRE 774

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +IN+   ++R   ER AIN+PIQGSAADI + AMI++ K+L + K  TKMLLQ+HDE+
Sbjct: 775 LPDINARNFNVRQFAERTAINSPIQGSAADILKIAMINLDKALVEGKFKTKMLLQVHDEI 834

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + EVP++E+    +++  +ME A    I L VPL  +      W E
Sbjct: 835 ILEVPKDELEAIEKLVKETMESA----IELSVPLVADESAGQTWYE 876



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 163/302 (53%), Gaps = 18/302 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ +  L L+DGSS  YRAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MENKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R      GI   E++ 
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLTVLGISWYELEN 113

Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           +EADDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 114 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLM 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P++ + L+AL GD  DNIPG+  +G KT   LL EYG+LE +  N   +K+ K 
Sbjct: 174 EKMGITPKQFIDLKALMGDKSDNIPGVTKVGEKTGLKLLLEYGSLEGVYENIDGMKKSKM 233

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +EN++   E A LS+ L  +    PITI L+ +  +  +  +L+ F   + F +  + + 
Sbjct: 234 KENLINDKEQAFLSKTLATINITAPITIGLDDINYQGPDLDKLVPFYDEMGFKQFKDNLG 293

Query: 290 TT 291
             
Sbjct: 294 AA 295


>gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
 gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
          Length = 877

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 205/517 (39%), Positives = 305/517 (58%), Gaps = 21/517 (4%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L+R+G+ ++    D  L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKAKVLLNRFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLARKIAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++ ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL+ P 
Sbjct: 486 KMEIAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLELPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRIL 758
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+  P ++   L+S+DYSQIELR+L
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV--PEREDSVLLSSDYSQIELRVL 662

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRL 817
           AHI+K   L + F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L
Sbjct: 663 AHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGL 722

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           +  L I R  A  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   
Sbjct: 723 SNNLGISRKGAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNF 782

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           +IR   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+
Sbjct: 783 NIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSEL 842

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +++  +ME+A    I L VPL  +      W E
Sbjct: 843 AEMKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/288 (40%), Positives = 155/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE+ GF +TIIS DKDL+QL    T +  + K     E    E++++K GI P
Sbjct: 119 IGTLDKLAEQNGFDITIISGDKDLIQLTDEHTVVELSKKGVAEFEAFTPEYLMEKMGITP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 TQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+KL  + T+ P+ I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKKLATIDTEAPVEIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 884

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 175/406 (43%), Positives = 260/406 (64%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +++P+ +V+++MEI GI + ++ L+ +       +  L + IYDL+G +FN++SPKQLG+
Sbjct: 483 MEQPLANVLAKMEIAGISVKKETLQDMEKANQAVIDELTQEIYDLAGMEFNINSPKQLGE 542

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +LF K++ P+    KT    +TA D+ +     +PI+  ILE+RQ++K++STY   L + 
Sbjct: 543 LLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDF 602

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I K   ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T    L+S+D
Sbjct: 603 ILK-DGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PETADEVLLSSD 660

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F    DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 661 YSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGI 720

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + LA  L IPR  A  YI+ YF R+PGI +Y+E+     +  GYVET+F RR  
Sbjct: 721 VYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRE 780

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +IN+   ++R   ER AIN+PIQGSAADI + AMI++ K+L D +  TKMLLQ+HDE+
Sbjct: 781 LPDINARNFNVRQFAERTAINSPIQGSAADILKIAMINLDKALVDGRFKTKMLLQVHDEI 840

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + EVP++E+    +++  +ME A    I L VPL  +      W E
Sbjct: 841 ILEVPKDELEAIEKLVKETMESA----IELSVPLVADESAGQTWYE 882



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 163/302 (53%), Gaps = 18/302 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ +  L L+DGSS  YRAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 7   MENKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERIQ- 62

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R    A GI   E++ 
Sbjct: 63  ---PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLTALGIKWYELEN 119

Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           +EADDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 120 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLM 179

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P++ + L+AL GD  DNIPG+  +G KT   LL EYG+LE +  N   +K+ K 
Sbjct: 180 EKMGITPKQFIDLKALMGDKSDNIPGVTKVGEKTGLKLLLEYGSLEGVYENIDGMKKSKM 239

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +EN++   E A LS+ L  +    PI I L+ +     +  +L+ F   + F +  + + 
Sbjct: 240 KENLINDKEQAFLSKTLATINITAPIAIGLDDINYSRPDLEKLVPFYDEMGFKQFKDNLG 299

Query: 290 TT 291
            T
Sbjct: 300 AT 301


>gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 878

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/406 (43%), Positives = 260/406 (64%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +++P+ +V+++MEI GI + +  L+++ A     +  L + IYDL+G +FN++SPKQLG+
Sbjct: 477 MEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEFNINSPKQLGE 536

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +LF K++ P+    KT    +TA D+ +     +PI+  ILE+RQ++K++STY   L + 
Sbjct: 537 LLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDF 596

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I  +  ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+   L+S+D
Sbjct: 597 I-LQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PETEDEVLLSSD 654

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F    DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 655 YSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGI 714

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + LA  L IPR  A  YI+ YF R+PGI  Y+E+     +  GYVET+F RR  
Sbjct: 715 VYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRE 774

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   +IR   ER AIN+PIQGSAADI + AMI++ K+L D +  TKMLLQ+HDE+
Sbjct: 775 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEI 834

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +VP+ E+     ++  +ME A    I+L VPL  +      W E
Sbjct: 835 ILQVPKNELEAVKTLVKETMESA----IDLSVPLIADENAGQTWYE 876



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 174/326 (53%), Gaps = 23/326 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M+ +  L L+DGSS  YRAF+A   L  + D      GL  NAI GF  ML  LL+  + 
Sbjct: 1   MENKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ- 56

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYKA R K P+    QLP +R    A GI   +++ 
Sbjct: 57  ---PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLSALGITFYDLEN 113

Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           +EADDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 114 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLM 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P++ + L+AL GD  DNIPG+  IG KT   LL EYG+LE +  N   +K+ K 
Sbjct: 174 EKMGITPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGVYENIDGMKKSKM 233

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +EN++   E A LS+ L  +    PITI L+ +  +  +  +L+ F   + F +  + + 
Sbjct: 234 KENLINDKEQAFLSKTLATINISAPITIGLDDINYQGPDLDKLVPFYDEMGFKQFKDNLG 293

Query: 290 T-----TYDCDAANIEPVVLDINTTE 310
                  +D   A ++ +  D+ T +
Sbjct: 294 APKKQEKFDVSYAEVDSLSADMFTDD 319


>gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7]
 gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7]
          Length = 856

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/424 (38%), Positives = 274/424 (64%), Gaps = 7/424 (1%)

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           +L L   L+ +L   ++L ++  ++ P+ +V++ ME  G++ D + +++    + K++ +
Sbjct: 435 LLPLAENLKLQLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTNGIREFGKWLKKDIEA 494

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           L + IYDL+G +FN++SPKQLG++L+ KL  P+  KTK+G + T A+ LE++    +PI+
Sbjct: 495 LTKQIYDLAGGEFNIASPKQLGEVLYEKLGLPAKKKTKSG-YSTNAEVLEEL-ADKHPIV 552

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           + +LE+R L+K+ STY D L   + +   RVH+ +    T TGR++S EPN+QNIP++ +
Sbjct: 553 RLVLEYRTLTKLSSTYVDGLLKEV-ESDGRVHSVFKQTETRTGRISSTEPNMQNIPVRKE 611

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           +G+ +R+ F++     L+ ADYSQIELR+LA +     + + FE   DIH M A+++FG+
Sbjct: 612 IGRNMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHAMTASQVFGI 671

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
             + V P+MR  AK +NF IIYGI  F L+  + +  +EA  YIK Y   FP + ++++K
Sbjct: 672 PADMVLPEMRSAAKAVNFGIIYGIGAFSLSKDIGVSVAEAKQYIKNYLDNFPKVSQFMDK 731

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
           T     +NGYV TIFGRR +  E+++    ++   +RAA+NAPIQG+AADI + AM+ V+
Sbjct: 732 TVEDGIKNGYVTTIFGRRRYIPELSATNKVMQAFGKRAAMNAPIQGAAADIIKIAMVKVY 791

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           + L++ KL  +++LQ+HDEL+ EV  E+   AS ++   ME A    + L VP++V++  
Sbjct: 792 QRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVLKEEMENA----VKLAVPMEVSVGE 847

Query: 969 SNNW 972
             +W
Sbjct: 848 GESW 851



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 152/295 (51%), Gaps = 22/295 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L  +DG+S + RAFY   +L+    G+  NAI GF N+  K +     + +A    V FD
Sbjct: 3   LLCIDGNSIMNRAFYGIRILTNSK-GICTNAITGFMNIYMKEIGEVHPDCVA----VAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++    YKANR  +P+ L  Q+PL++      GI  +E +G+EADDI+ T + 
Sbjct: 58  LKAPTFRHKANSSYKANRKGMPDELAQQMPLIKKLLGLLGIKTVECEGYEADDILGTLSK 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQA 184
            A   G    I++ D+D  QLVS   T      KE KI   E +++++G+ P +M+ ++A
Sbjct: 118 AAADSGNECYILTGDRDSFQLVSENVTVRLAGTKETKIYTPERIMEEYGVTPRQMIEVKA 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI--------LINASRIKQKKRRENILEY 236
           L GD+ DNI G+ GIG KTA  L+Q+ G +EN+        + N +R K +   ++ ++ 
Sbjct: 178 LMGDTSDNISGVKGIGEKTALSLIQQAGTVENLYSDLDKFTITNGNRAKLEAGHQDAID- 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                 S  L  +  + P+        L   +     +FL  LE  +L+ R+  T
Sbjct: 237 ------SHFLAEICLEAPVEKDTAAYKLTAPDAAEAKAFLTELEMLRLMERLKLT 285


>gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
 gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
          Length = 881

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 319/539 (59%), Gaps = 39/539 (7%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQ 510
            K+F E    LK+ ++ K  K++L   GI+++   F D  L  Y+L S    ++I++IA 
Sbjct: 363 FKEFLEKTP-LKV-YDFKRAKVLLSHLGITLQNPAF-DSRLAKYLL-STVEDNEISTIAS 418

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ-----LWLLLRPKLIVEKL 565
            +            + ++P+D++   +  + AI    V+L+     + +LL  +  + + 
Sbjct: 419 LY-----------SQIALPLDEVVYGKGAKKAIPEKAVLLEHLARKVAVLLDTEEPMTEQ 467

Query: 566 LHVYERLD------KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L  +++LD      +P+  V+++MEI GI++++  L+ +  E    L  L + IY+L+GE
Sbjct: 468 LKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVERQTLQDMQVENEAVLERLTQEIYELAGE 527

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SPKQLG ILF KL+ P     KT    +TA D+ +      PI+  ILE+RQ++K
Sbjct: 528 EFNINSPKQLGVILFEKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAK 587

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           I+STY   L + I +   ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ 
Sbjct: 588 IQSTYVIGLQDWILE-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVP 646

Query: 740 PPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK---VSP 795
                 L+S+DYSQIELR+LAHI+    L   F++  DIH   A  +F  NIEK   V+P
Sbjct: 647 EEENSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVF--NIEKPEDVTP 704

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR+AK +NF ++YGIS F L+  L I R EA  YI+ YF R+PGI +Y+E+     R 
Sbjct: 705 NDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARD 764

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYVET+F RR    +INS   ++R   ER AIN+PIQGSAADI + AMI + ++LE   
Sbjct: 765 KGYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGA 824

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             TKMLLQ+HDE+V +VP +E+    +++  +ME A    I L VPL+ +      W E
Sbjct: 825 YKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESA----IELVVPLEADENEGKTWYE 879



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/321 (36%), Positives = 165/321 (51%), Gaps = 21/321 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+K+N L L+DGSS  +RAF+A  L +     +  +GL  NA+ GF  ML  LL+  +  
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE     F VTI+S DKDL+QL    T +  + K     E+    ++ 
Sbjct: 115 EADDIIGTLDKMAEATSVPFEVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLK 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+L+ I  +   +K  K 
Sbjct: 175 EKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEYGSLDGIYEHIDEMKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +EN++   E A LS+ L  + T+ PI I L+ +     +   L  F + + F +L   + 
Sbjct: 235 KENLINDKEQAYLSKTLATIDTNAPIEIGLDDITYTGPHLENLAKFYEEMGFKQLRQAL- 293

Query: 290 TTYDCDAANIEPVVLDINTTE 310
              D       PV +D    E
Sbjct: 294 ---DLSGEEAAPVAIDYTEVE 311


>gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 873

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 287/486 (59%), Gaps = 23/486 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L++Y+LD  R+++    + +++              S+P   I+   V    +    
Sbjct: 406 DMSLLAYLLDPTRTNYGYLYLTERF--------------SVP--SIASGSVDVECVSMVK 449

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L +  +       E+L  +YE ++ P+I  +  ME  GI ID + L + +A   + L 
Sbjct: 450 ALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTARFKEELA 509

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            +++ IYD++GE FN++SPKQLG ILF K+  P   KTKTG + T A+ L+ +   ++PI
Sbjct: 510 QVQQEIYDIAGETFNINSPKQLGVILFEKMNLPIIKKTKTG-YSTDAEVLDMLRH-ESPI 567

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ IL +R ++K+ STY + L   IN +T+R+HT ++   T TGRL+S +PNLQNIP++T
Sbjct: 568 VEKILAYRSVAKLVSTYCEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 627

Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           + G++IR  F        L+SADYSQIELRILAH++    L + F    DIHR  AAE+ 
Sbjct: 628 EKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVL 687

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G + E V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+P + EY+
Sbjct: 688 GKSQEDVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYM 747

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           ++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI + AM  
Sbjct: 748 DRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQ 807

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V + LE+    +++LLQ+HDELV EV   E+    +++  +M+      + L+V L V++
Sbjct: 808 VEQKLEEGNFTSRLLLQVHDELVLEVVNSELEAVEELLRTTMQSV----VELQVHLIVDV 863

Query: 967 KVSNNW 972
             + NW
Sbjct: 864 HHAENW 869



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 199/363 (54%), Gaps = 29/363 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    E    + AV FD
Sbjct: 4   LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + + 
Sbjct: 59  KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                  AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++ +
Sbjct: 119 KFGTSEMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GDS DNIPG+PG+G KTA  L+ EYG+LE++  +   I  KK +E ++E  + A L
Sbjct: 179 KALMGDSSDNIPGVPGVGEKTALKLITEYGDLESVYNHIEDISGKKLKERLVENKDLAFL 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI--- 299
           SR+L  ++TD+ ++  +E    ++ +   +    + L FTKL  R+      +A +    
Sbjct: 239 SRELATIKTDMDLSYKVEDFA-QNFHASEVQPLFETLGFTKLTPRIVQVMGGEATDFGDP 297

Query: 300 -------EPVVLD------INTTE---NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
                  E + LD        T+E   +K +A+   +D  T  +T   + LS+  + + +
Sbjct: 298 GSLFAPQEEISLDDLADAKALTSEFYTDKTVAVHVVLDGKTPFRTVTNAYLSNGDTIVKT 357

Query: 344 EQT 346
           + T
Sbjct: 358 DDT 360


>gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
 gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
          Length = 886

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 199/516 (38%), Positives = 308/516 (59%), Gaps = 19/516 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L   GI +   + D  L  Y+L S    +++++IA    Q  L+   +   
Sbjct: 380 YDFKRSKVLLSHLGIELPTADFDSRLAKYLL-STVEDNELSTIASLYGQTPLAKDVEVYG 438

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P D++    + +H      V+++   +L+ KL       +   ++ P+ +V++
Sbjct: 439 KGAKKAVPEDQV----LFQHLATKLQVLVETEPVLKEKLAEHGQSDLLFDMELPLANVLA 494

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEITGI++++  LK +  E    L +L + IYD++G++FN++SPKQLG ILF ++  P+
Sbjct: 495 KMEITGIKVNRQTLKDMEVENQVTLDALTQEIYDMAGQEFNINSPKQLGTILFEEMGLPT 554

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  ILE+RQ++K++STY   L + I     ++HT
Sbjct: 555 SMTKKTKTGYSTAVDVLERLAPHAPIVAKILEYRQIAKLQSTYVVGLQDFI-LDDGKIHT 613

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF +P  +   L+S+DYSQIELR+LA
Sbjct: 614 RYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF-TPEWEDSVLLSSDYSQIELRVLA 672

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           HI+    L   F+N  DIH   A  +F +   E V+P  RR+AK +NF ++YGIS + L+
Sbjct: 673 HISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRRNAKAVNFGVVYGISDYGLS 732

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L I R  A +YI  YF RFPGI +Y+E+     +  GYVET+F RR    +INS   +
Sbjct: 733 QNLGISRKAAKNYIATYFERFPGIKDYMERVVREAKDKGYVETLFKRRRTLPDINSRNFN 792

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           IRN  ER AIN+PIQGSAADI + AMI++ ++LE     TKMLLQ+HDE+V EVP  E++
Sbjct: 793 IRNFAERTAINSPIQGSAADILKIAMINLDQALEAGSFKTKMLLQVHDEIVLEVPNAELS 852

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +++  +ME A +    L VPL  +      W E
Sbjct: 853 AIKKLVKKTMESAIV----LAVPLLADENSGKTWYE 884



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 163/318 (51%), Gaps = 23/318 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M  +N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  ++    K
Sbjct: 10  MANKNKLLLIDGSSIAFRAFFA---LYNQIDRFKNPVGLHTNAIYGFHLMLDHMM----K 62

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   +++ 
Sbjct: 63  RIEPTHVLVAFDAGKTTFRTEMYADYKGGRDKTPDEFREQFPYIREMLDHLGIAYYDLEN 122

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170
           +EADDII T   +AE   F VTI+S DKDL+QL    T +  + K     E+   +H+++
Sbjct: 123 YEADDIIGTLDKLAENGEFDVTIVSGDKDLIQLADDNTVVEISRKGVAEFEEYTPQHLME 182

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K +
Sbjct: 183 KMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEAIYDHIDSFKPSKMK 242

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR---LISFLKALEFTKLINR 287
           EN++   E A LS+ L  +    PI I L+  + +   GPR   L  F   ++F +    
Sbjct: 243 ENLINDREQAFLSKTLATINIQSPIEIGLDDTLYK---GPRLDELAKFYDEMDFKQFKAG 299

Query: 288 VATTYDCDAANIEPVVLD 305
           +    + +   I+  V+D
Sbjct: 300 LGLKEEAEQVEIKYQVVD 317


>gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
 gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
          Length = 871

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 174/419 (41%), Positives = 265/419 (63%), Gaps = 7/419 (1%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           LR KL   ++ H++  ++ P++  +  ME  G++I+ + LK    ++   +  LE+ IY+
Sbjct: 458 LRQKLKETQMEHLFTDIEMPLVFTLYDMEQNGVRIEAEALKFYGEQLGIKIEELEKEIYE 517

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
            +GE+FN++SPKQLG ILF K+    G KTKTG + T A  L+++   D P++  ILE+R
Sbjct: 518 AAGEEFNINSPKQLGVILFDKMGLKGGKKTKTG-YSTAADVLDKL-APDYPVVAQILEYR 575

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           QL+K+KSTYAD L N+I+    R+H  ++   T TGR++S EPNLQNIP++ +LG+ IR+
Sbjct: 576 QLTKLKSTYADGLSNYISG-DGRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRK 634

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            FI       I ADYSQIELR+LAH +    L   ++   DIHR+ A+++F V   +V+ 
Sbjct: 635 VFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHRITASQVFHVPFGEVTD 694

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR+AK +NF I+YGIS F L+  L I R EAA YI  YF  +PGI  +++ T    ++
Sbjct: 695 LQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAKYIDDYFKTYPGIKLFLDDTVAHAKE 754

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYV T+FGRR    E++S     R+  ER A+N+PIQG+AADI + AMI V++ L++  
Sbjct: 755 MGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIGVNRRLKEKH 814

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + ++++LQ+HDEL+ E    E+     I+   ME A     +L VPL++++   +NW E
Sbjct: 815 MRSRLVLQVHDELLIEAYGPELEEVKAILKDEMEHAA----SLEVPLEIDMHTGDNWYE 869



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 170/315 (53%), Gaps = 17/315 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L     E    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGLPDLTNS-EGLHTNAVYGFLNIMFKILD----EEAPEYLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E+Y DYK  R  + E L  Q+P+++   +A GI  IE  G EADD++ T + 
Sbjct: 60  VHAPTFRHEMYADYKGTRKPMAEELRQQVPVIKDVLKAMGINIIEQAGLEADDLLGTISK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDI-----EHVIKKWGIPPEKMV 180
              ++G  V++IS D+DL+QL +    +     K+ + +I     E V +++ + PE+ +
Sbjct: 120 RCGRQGMDVSVISGDRDLLQLATKRVKIRIPKTKQGRTEIEDYYAEDVKERYQVTPEEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+P IG KTA  ++ EY ++EN   +   +K  +  + + E+ + A
Sbjct: 180 DLKALMGDASDNIPGVPSIGEKTATKIITEYHSIENAYEHVEELKPPRAAKALKEHWDMA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA--N 298
            +SRKL  +  D  +   L+   L +        + + L+F  L+ R    +D  A   +
Sbjct: 240 VMSRKLAKINVDAGVAFRLDEAKLGNVFTEEAYGWFQRLQFKNLLGR----FDVKAPSNS 295

Query: 299 IEPVVLDINTTENKG 313
           +E    +I + E  G
Sbjct: 296 VEDCFREIASPEEAG 310


>gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 681

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 248/773 (32%), Positives = 397/773 (51%), Gaps = 124/773 (16%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DGSS I+RAF+A P L+   DG+  N + GF  M ++ ++  + + I     V FD
Sbjct: 5   VMLIDGSSLIFRAFFALPNLTN-ADGVMTNGVYGFLTMYFRAVEEYKPDYIL----VAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ + DYKANR K P  L  Q  +++    +  +  ++I GFEADDI+ TY+ 
Sbjct: 60  KKTKTFRHKEFEDYKANRDKAPSELNYQFGILKDILDSLNVKYLDIDGFEADDIVGTYSK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           IA  EG    II+ DKD  QLV+    +Y T K     E+I  E + + +G+ P++++ +
Sbjct: 120 IARDEGLETVIITGDKDYFQLVNDDVIVYLTRKGISQMEEITEEKIKEDYGLSPKQLIDV 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+ GIG KTA   +++YG++E +  N   I  KK +EN+         
Sbjct: 180 KGLMGDKSDNIPGVDGIGEKTALKYIKKYGSMEALYENLDDISGKKTKENL--------- 230

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                       R I+FL     +K I  + T          P+
Sbjct: 231 -------------------------KNSRQIAFL-----SKKIGTIVTN--------API 252

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ-- 360
             +I+               D  +K     SL ++ SK N  +     FLE+ +  S+  
Sbjct: 253 DYEIS---------------DLRVKNPDMESLKEKFSKYNFNK-----FLEKFEDGSKEQ 292

Query: 361 -------YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                  Y   +D ++ I   +DI++     E I    FK I +  +  HSK   IAI +
Sbjct: 293 REELDFSYSFTDDDFSVI---EDIEK-----ENI--FYFKTIFENDNYIHSKAFKIAIKS 342

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              K          FI                 ++ +   KK+FE+E+  K+  +IK D 
Sbjct: 343 PSSK---------TFI-------------YNPDQKFVENFKKYFEDENINKVSFDIKEDI 380

Query: 474 LVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           ++ ++ GI +   ++D MLM Y++D  RSS+D+ + +Q +L Y     +++L   ++   
Sbjct: 381 VLFNKLGIEINFPYDDTMLMHYLIDPSRSSYDLKTFSQAFLKYEVLNEEDLLGKGRNKKS 440

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +S+ ++ ++     N I     +L  KL    +  +Y+  +  +  V+++MEITG  
Sbjct: 441 YKDLSEKELGKYLSSIINAIEDSLDILTDKLKELSMYELYKDCEIKLSKVLAEMEITGFI 500

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
            D++ L+++  E+S  L  LE+ IY+L+G +FN++SPKQL  ILF  L+ P   KTKTG 
Sbjct: 501 CDKNELEKIKDEVSLELEDLEKVIYELAGSEFNINSPKQLSIILFEDLELPIIKKTKTG- 559

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A+ LE++    +PII  I  +R++ K+KSTY +SL   I++   R+ + +    T 
Sbjct: 560 YSTDAKVLEKLR-DKHPIIGKIERYREMYKLKSTYLESLEECIDE-DGRIRSTFKQNVTA 617

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           TGRL+S EPNLQN+PI+T+ G+KIR+AF +   K LI ADYSQIELR+LAH+A
Sbjct: 618 TGRLSSTEPNLQNLPIRTEEGRKIRKAFKADKDKVLIDADYSQIELRVLAHLA 670


>gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
 gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
          Length = 877

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L+R+G+ ++    D  L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKAKVLLNRFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLALPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWENSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    E++++K GI P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKLGITP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K ++N++  
Sbjct: 179 TQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKDNLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIEIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
 gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
          Length = 886

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 309/515 (60%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL-- 521
           ++ K  K++L   G+ +     D  L +Y+L S    +++A++A+ +  +S    E++  
Sbjct: 380 YDFKRSKVLLSHLGLDLPAASYDARLANYLL-STVEDNEMATLARLYTTISLDTDEVVYG 438

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P DK   + +  H      V+L    ++  KL   +   +Y  ++ P+ +V++
Sbjct: 439 KGVKRAVP-DK---AVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLA 494

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI ++QD L++++ +    +  L + IY+++GE FN++SPKQLG ILF K++ P 
Sbjct: 495 KMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVFNINSPKQLGVILFEKMQLPL 554

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     R+HT
Sbjct: 555 HLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-MADGRIHT 613

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 614 RYLQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAH 673

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F+   DIH   A  +FG+   E V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 674 ISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDFGLSN 733

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L IPR +A  YI  YF R+PGI  Y+E+     +  GYVET+F RR    +INS + ++
Sbjct: 734 NLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQLPDINSRQFNV 793

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ ++L      TKMLLQ+HDE+V EVP  E+  
Sbjct: 794 RSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAA 853

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ++  +ME A    ++L VPL+V+     +W E
Sbjct: 854 VKALVKETMESA----VSLAVPLRVDESAGKSWYE 884



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 167/301 (55%), Gaps = 17/301 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 7   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 62

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E++ DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 63  --PTHVLVAFDAGKTTFRTELFADYKAGRAKTPDEFREQFPYIRDMLGALGIAFYELEHY 120

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 121 EADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLM 180

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
            K G+ PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  +    K  K 
Sbjct: 181 DKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEGIYEHIDSFKPSKM 240

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +EN+L   E A LS+ L  + T  PITI LE ++ +  +  RL  F   ++F +L N +A
Sbjct: 241 KENLLHDKEQAFLSKTLATINTSAPITIGLEDIVYQGPDLDRLSQFYDEMDFVQLKNALA 300

Query: 290 T 290
           +
Sbjct: 301 S 301


>gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 880

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKAIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LTDGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL ++G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHKFGSLEGIYEHIDGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 862

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 309/526 (58%), Gaps = 38/526 (7%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
           YLKK FEN    KI HN K    VL +  I +  F  D  + +Y+++S    + + ++ +
Sbjct: 366 YLKKLFENTS-EKIIHNAKNLFTVLSKLDIDINNFVFDTEIAAYLIESSDKEYTLKTLFE 424

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK---LIVEKLLH 567
            +L  T ++I      S  I  +S+                L+  L+ K   L +E LL+
Sbjct: 425 TYLHETYQDI------SQEISNLSN----------------LYQRLKEKIKELQMEDLLY 462

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
              +++ P++ V++ ME  G ++D++ L Q+  +    +   ++ IY+++GE+FN+SSPK
Sbjct: 463 ---KIELPLVKVLADMEKVGFKVDREQLDQLREKFINEITVSQKEIYEMAGEEFNISSPK 519

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG + T A+ LE++    +PII  I  +RQL+K+ STY + 
Sbjct: 520 QLGKILFEKLDLPVIKKTKTG-YSTNAEVLEKLK-DKHPIIDKITYYRQLTKLNSTYVEG 577

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI- 746
           L  H+  +  R+H+ ++   T TGRL+S EPNLQNIPIK ++G+ IR+ F+    + LI 
Sbjct: 578 LI-HVIDQDGRIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGRAIRKVFVPNDEESLIL 636

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           SADYSQIELR+LAH+A    +   +   +DIH   A+E+F + +++V+ + R  AK +NF
Sbjct: 637 SADYSQIELRVLAHMADDENMKTAYLEHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNF 696

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YGIS F L+  L+I + EA  YI  YF R+P + EYI  T     +  YV TIF RR
Sbjct: 697 GIVYGISDFALSEDLKISKKEAKQYIDTYFSRYPKVKEYISSTIAKAEKELYVNTIFNRR 756

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
               EI S    ++ + +R A+NAPIQGSAADI + AM++V K L++ KL + ++LQ+HD
Sbjct: 757 RFIPEITSSNKIVKALGDRLAMNAPIQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHD 816

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           E++  V ++E+ T  +++   ME      I+  VPL+V+I     W
Sbjct: 817 EIILNVYKDELETVKELVKKEMESV----IDFSVPLEVDINTGTTW 858



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 166/289 (57%), Gaps = 15/289 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG S + RAFYA P L+   +GL  NAI GF NML+K+ ++ + + I +     FD
Sbjct: 4   LVILDGHSLMNRAFYAIPPLTTA-EGLHTNAIFGFINMLFKIREDIKPDYIVT----TFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E Y DYKA R ++P+ L  Q   ++       I   EI GFEADD+I T   
Sbjct: 59  RKAPTFRHEEYQDYKAGRKRMPDELHEQFEPLKDILSKMAINIFEIDGFEADDLIGTLAV 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182
            AE EG  V I++ D+D +QL S    +  T K     E  D   +I+ +G+ P + + +
Sbjct: 119 KAESEGIEVYIVTGDRDALQLASDNIKVLLTKKGVSEREVYDRNRMIEDYGVTPTQFIDV 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DNIPG+PGIG KTA  L++EYG++E +L N  ++K  K +EN+  + E A  
Sbjct: 179 KGLMGDASDNIPGVPGIGEKTAYKLIKEYGSIEGVLDNLDKLKG-KIKENLESHCEDAIF 237

Query: 243 SRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRV 288
           S+KL  + T+VPI I L+ +  +   D    R + F    +F  LIN++
Sbjct: 238 SKKLATIITNVPIDIDLDDIKSQEAYDVKALRELFF--KYQFKSLINKL 284


>gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J]
 gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J]
          Length = 881

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 179/436 (41%), Positives = 277/436 (63%), Gaps = 7/436 (1%)

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           H  +   V+++    +  KL     L ++E ++ P+ +V+++MEITGI+++++ L +++ 
Sbjct: 449 HLAKKIKVLVESKATMLDKLSDHDQLALFEDIEMPLANVLAKMEITGIKVNKETLVEMAE 508

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +    +  L + IYDL+GE+FN++SPKQLG ILF K++ P     KT    +TA D+ + 
Sbjct: 509 QNKVIIDRLTQEIYDLAGEEFNINSPKQLGSILFEKMQLPIEMTKKTKTGYSTAVDVLER 568

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                P++  IL++RQ++K++STY   L ++I     ++HT Y    T TGRL+S++PNL
Sbjct: 569 LAPIAPVVAKILDYRQITKLQSTYLIGLQDYI-MEDGKIHTRYVQDLTQTGRLSSIDPNL 627

Query: 721 QNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAHI+    L   F    DIH 
Sbjct: 628 QNIPIRMEQGRLIRKAFTASSEDALLLSSDYSQIELRVLAHISGDQHLITAFNEDADIHT 687

Query: 780 MVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             A  +F ++ E+ V+   RR+AK +NF I+YGIS F L+  L I R +A +YI  YF R
Sbjct: 688 STAMRVFAIDKEEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGISRQKAKEYINTYFDR 747

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PGI +Y++      +  GYVET+F RR    +INS   ++R+  ER AIN+PIQGSAAD
Sbjct: 748 YPGIKDYMDSIVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAAD 807

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI++ K+LE+ +  TKMLLQ+HDE+V EVP++E+    Q++  +ME A    ++L
Sbjct: 808 ILKIAMINLDKALEEGRFKTKMLLQVHDEIVLEVPKDELEKVKQLVKETMEHA----VDL 863

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL+ +     +W E
Sbjct: 864 SVPLRADENSGKSWYE 879



 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 118/293 (40%), Positives = 161/293 (54%), Gaps = 13/293 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        R   GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNRLLLIDGSSVAFRAFFALYQQIDRFRNQAGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K P+    Q P +R   +A G+P  ++  +EA
Sbjct: 57  PTHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIREMLKALGVPYYDLVNYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   IAE+    F VTI+S DKDL+QL    T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKIAERTEVPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPDYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LLQEYG+LE I  N    K  K +E
Sbjct: 177 MGITPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLQEYGSLEGIYANVDSFKPSKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           N++     A LS+ L  + T+ PITI LE L+    N   L SF   + F +L
Sbjct: 237 NLINDKAQAFLSKTLATIDTNAPITIGLEDLVYHGPNHEALASFYDEMGFVQL 289


>gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
 gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
          Length = 889

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 383 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 441

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 442 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 497

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 498 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 557

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 558 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 616

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 617 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 676

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 677 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 736

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 737 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 796

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 797 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 856

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 857 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 887



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 18  LLLIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSH 70

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADDI
Sbjct: 71  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDI 130

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 131 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTP 190

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 191 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 250

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 251 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 298


>gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
 gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
          Length = 889

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 383 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 441

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 442 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 497

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 498 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 557

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 558 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 616

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 617 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 676

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 677 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 736

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 737 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 796

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 797 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 856

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 857 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 887



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 18  LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 70

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 71  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 130

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 131 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 190

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 191 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 250

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 251 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 298


>gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I)
           [Deinococcus deserti VCD115]
          Length = 923

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/498 (38%), Positives = 293/498 (58%), Gaps = 37/498 (7%)

Query: 481 ISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +S+RG      +D +L +Y+LD   S+  +A++  ++L               P D    
Sbjct: 453 LSVRGTVVDPGDDPLLHAYLLDP--SNTTMATVTPRYLGV-----------PWPAD---- 495

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                 A   + V  +L   L P+L  E    +Y  ++KP+  V+++ME+ G+++D + +
Sbjct: 496 ------AAGRAAVTARLLRDLPPQLD-EARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYI 548

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTA 654
           + ++   +  L +LE  I+   G +F++ SP QL  +L+ +L   SG KTK TG+  T  
Sbjct: 549 RGLAGAAAARLAALETEIHQHVGREFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAV 608

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +   ++P+I  +LE+R+L K++ TY D LP+ +N RT R+HT ++  +  TGRL+
Sbjct: 609 AALEPLRD-EHPVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFAQTAVATGRLS 667

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           SL PNLQNIPI++++G++IR+ FI+     LISADYSQIELR+LAHIA    + Q F   
Sbjct: 668 SLNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFREG 727

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA++ G+  + V+   RR AKT+NF ++YG+S  RL+ +L I   EAA +I+ 
Sbjct: 728 ADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMSAHRLSNELGISYVEAAGFIET 787

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF+ +PGI  YI++T  F R  GYVET++GRR +  E+ +   ++R   ER A N PIQG
Sbjct: 788 YFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVREAGERLAYNMPIQG 847

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI + + LE   L  ++LLQ+HDEL+ E PE      +++    ME A   
Sbjct: 848 TAADIIKHAMIRLDRELE--ALGGRLLLQVHDELLIEAPENRAEDVARLTREVMEGAA-- 903

Query: 955 KINLRVPLKVNIKVSNNW 972
              L VPL V +    NW
Sbjct: 904 --KLSVPLAVEVGTGPNW 919



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 140/258 (54%), Gaps = 19/258 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG +  +R+++A P L+    G   NAI GF  M  +L +    + I     V+FD
Sbjct: 10  LVLIDGHALAFRSYFALPPLTNSR-GEATNAILGFLRMTLRLAKQRSNQVI-----VVFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+E +  YK+ R + P  L  Q+  +R    A G P +E  G+EADD+IA+ T 
Sbjct: 64  PPVKTFRHEQFDGYKSGRAETPADLPAQINRIRAIVDALGFPRLEEPGYEADDVIASLTR 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKMVC 181
            AE  G  V I+++D+D  QL      L D VK    D      + V +K+G+   + V 
Sbjct: 124 KAEGSGMQVRIVTSDRDAYQL------LDDHVKVIANDFSLIGPDQVFEKYGVTVRQWVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAET 239
            +ALTGD+ DNIPG  GIG KTAA LLQEYG LE I     A  +K    R+ +L+  E 
Sbjct: 178 YRALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEGIYEAARAGTLKPDGTRQKLLDSEEA 237

Query: 240 ARLSRKLVMLRTDVPITI 257
            + S +L  + TD+P+ +
Sbjct: 238 VKFSHELSCMVTDLPLEV 255


>gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 924

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 418 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 476

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 477 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 532

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 533 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 592

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 593 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 651

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 652 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSQEDAVLLSSDYSQIELRVLAH 711

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++  E V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 712 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAEDVTANDRRNAKAVNFGIVYGISDFGLSN 771

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 772 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 831

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++  +L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 832 RSFAERTAINSPIQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIVLEVPNDELTA 891

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL+ +     +W E
Sbjct: 892 IKKLVKDTMEAA----VDLAVPLRADENAGQSWYE 922



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 45  MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 100

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 101 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 158

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 159 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 218

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 219 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHVEGFKASKM 278

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 279 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 335

Query: 287 RVAT 290
            +A+
Sbjct: 336 GLAS 339


>gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115]
          Length = 926

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/498 (38%), Positives = 293/498 (58%), Gaps = 37/498 (7%)

Query: 481 ISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +S+RG      +D +L +Y+LD   S+  +A++  ++L               P D    
Sbjct: 456 LSVRGTVVDPGDDPLLHAYLLDP--SNTTMATVTPRYLGV-----------PWPAD---- 498

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                 A   + V  +L   L P+L  E    +Y  ++KP+  V+++ME+ G+++D + +
Sbjct: 499 ------AAGRAAVTARLLRDLPPQLD-EARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYI 551

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTA 654
           + ++   +  L +LE  I+   G +F++ SP QL  +L+ +L   SG KTK TG+  T  
Sbjct: 552 RGLAGAAAARLAALETEIHQHVGREFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAV 611

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +   ++P+I  +LE+R+L K++ TY D LP+ +N RT R+HT ++  +  TGRL+
Sbjct: 612 AALEPLRD-EHPVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFAQTAVATGRLS 670

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           SL PNLQNIPI++++G++IR+ FI+     LISADYSQIELR+LAHIA    + Q F   
Sbjct: 671 SLNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFREG 730

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA++ G+  + V+   RR AKT+NF ++YG+S  RL+ +L I   EAA +I+ 
Sbjct: 731 ADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMSAHRLSNELGISYVEAAGFIET 790

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF+ +PGI  YI++T  F R  GYVET++GRR +  E+ +   ++R   ER A N PIQG
Sbjct: 791 YFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVREAGERLAYNMPIQG 850

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI + + LE   L  ++LLQ+HDEL+ E PE      +++    ME A   
Sbjct: 851 TAADIIKHAMIRLDRELE--ALGGRLLLQVHDELLIEAPENRAEDVARLTREVMEGAA-- 906

Query: 955 KINLRVPLKVNIKVSNNW 972
              L VPL V +    NW
Sbjct: 907 --KLSVPLAVEVGTGPNW 922



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 140/258 (54%), Gaps = 19/258 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG +  +R+++A P L+    G   NAI GF  M  +L +    + I     V+FD
Sbjct: 13  LVLIDGHALAFRSYFALPPLTNSR-GEATNAILGFLRMTLRLAKQRSNQVI-----VVFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+E +  YK+ R + P  L  Q+  +R    A G P +E  G+EADD+IA+ T 
Sbjct: 67  PPVKTFRHEQFDGYKSGRAETPADLPAQINRIRAIVDALGFPRLEEPGYEADDVIASLTR 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKMVC 181
            AE  G  V I+++D+D  QL      L D VK    D      + V +K+G+   + V 
Sbjct: 127 KAEGSGMQVRIVTSDRDAYQL------LDDHVKVIANDFSLIGPDQVFEKYGVTVRQWVD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAET 239
            +ALTGD+ DNIPG  GIG KTAA LLQEYG LE I     A  +K    R+ +L+  E 
Sbjct: 181 YRALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEGIYEAARAGTLKPDGTRQKLLDSEEA 240

Query: 240 ARLSRKLVMLRTDVPITI 257
            + S +L  + TD+P+ +
Sbjct: 241 VKFSHELSCMVTDLPLEV 258


>gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ]
          Length = 883

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 295/486 (60%), Gaps = 10/486 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D++   +V + G   + I S+++K+L  +       +K  +P +   D  VQE +   ++
Sbjct: 403 DVVQAQFVANPGEK-NTIESLSEKFLGSSIPAF--EKKKPLPSENEED-LVQEISTARAH 458

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
              ++   L  +L  ++LL+V+  +D  +  V++ ME  G+ I++    +   E+   L 
Sbjct: 459 SCFRVSEFLLEELERKELLNVFHDIDNKLTPVLAAMEYEGVHINKAFFSEYEKELQTKLD 518

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNP 666
            L+ ++   S E  NL+SPKQ+G +LF +L+ P G KTKTG + T +  LE +   G + 
Sbjct: 519 ELQASVDKFSKEPVNLNSPKQVGVLLFEELELPVGKKTKTG-YSTDSSVLEDLAAKGLSE 577

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +   ILE+R++ KI STY  ++P  +N+ + ++HT ++     TGRL+S  PNLQNIPI+
Sbjct: 578 VPALILEYREVGKILSTYVKAIPELLNEASGKIHTHFNQNVAATGRLSSNHPNLQNIPIR 637

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           ++LG+++R+ FI+ P K L++ADYSQ+ELR+LAH +    +   F+  +DIHR  A+EI 
Sbjct: 638 SELGRRVRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFKKGVDIHRRTASEIM 697

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV +E+V    R  AK +NF ++YG S F LA  L+IPR EA +YI  YF RF  +  Y+
Sbjct: 698 GVPVEEVGSNDRSKAKAVNFGLMYGQSSFGLAAALKIPRKEAKEYITNYFERFSSVKGYL 757

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           +  K    + GY  T+ GR+ +  +I+S   +I+   ER AIN+PIQG+AADI + AMI+
Sbjct: 758 DHLKEECEKTGYAITLKGRKRYLADIHSTNRTIKANAERVAINSPIQGTAADIIKLAMIN 817

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           + K L+D KL +KM+LQ+HDEL+FEV E E+     I+   MEK     ++L VPL V++
Sbjct: 818 IQKVLDDKKLKSKMILQVHDELIFEVVESELEEMKTILKDGMEKV----VSLSVPLDVDM 873

Query: 967 KVSNNW 972
            V  NW
Sbjct: 874 GVGVNW 879



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 107/278 (38%), Positives = 154/278 (55%), Gaps = 5/278 (1%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L +VD SSFI+RAFYA  +L    +G+PVNA+ G  +ML KLL   +     SH  +
Sbjct: 7   KNRLIIVDISSFIFRAFYAIRVL-HSPEGVPVNAVHGVLSMLLKLLSKYQ----PSHILL 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D    +FRNE++  YKANR + PE L PQ  L++       +P+  ++GFEADD+I +
Sbjct: 62  ARDTKGGSFRNELFDQYKANRSEPPEELKPQFDLIKQLIDHMELPSSTVEGFEADDLIGS 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                + +   + I S DKDLMQ V     + DT+K++  D E V +K G+ PE++V   
Sbjct: 122 ACVQWKSDFDEILIASGDKDLMQFVGDNIKMLDTMKDKTYDREGVFEKMGVYPEQIVDYL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           ++ GD+ DNIPG+ GIG K AA LL E+G LE  +     +K KK      EY E   LS
Sbjct: 182 SMVGDASDNIPGMKGIGAKGAAKLLAEHGTLEKCIEIKDTLKGKKLTTAFGEYLEDGLLS 241

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           + L+ ++TDV + +              L  FL+ L F
Sbjct: 242 KSLIEIKTDVDLGLKSTDSKFSFYPADSLFDFLRGLGF 279


>gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 875

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 215/627 (34%), Positives = 334/627 (53%), Gaps = 62/627 (9%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIA----IAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
           K+E   S  F+ + D MD       A    +  + + + D T      I ++++      
Sbjct: 270 KIELFKSLEFRQLLDGMDVEADNATASRDFVPTTNMSKVDFTQLSEAAIHVEVA------ 323

Query: 439 STGKNTLTKEILSY---------------------LKKFFENEHFLKIGHNIKYDKLVLH 477
             G N L  E+L +                     L  + E+E   K  H+ K   + + 
Sbjct: 324 --GPNYLKDELLKFGLYDGEQYVVIPFDKVNEYPELVAWLEDETTQKWVHDAKKTYIAMK 381

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL---KSRKSSIPIDK 532
           R  I++     D ML SY++D  R+  D+ S+   +  ++ + ++    K +   IP D 
Sbjct: 382 RSDIAIENVVFDTMLASYIIDPSRTIEDVHSVMTHFDQTFVQDDVSVYGKGKSFHIPEDG 441

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LDKPMIDVVSQMEIT 586
           + D  +          IL    +++P+++   +L  +E+      ++ P+  ++S+ME  
Sbjct: 442 VLDKHIAS--------ILDAIHVVQPQMMT--ILEAHEQTSLLSEIELPLALILSEMEYI 491

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI  D D LK++   I   L  L E I++ +GEKFN++SPKQLG ILF KL+ P   KTK
Sbjct: 492 GIHTDIDTLKEMETVIQTELDQLIEQIHEQAGEKFNINSPKQLGVILFEKLELPVIKKTK 551

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T    LE++    +PII NIL +R LSK++STY + L   I     R+HT ++  
Sbjct: 552 TG-YSTAVDVLEKLQNA-HPIIDNILTYRTLSKLQSTYVEGLQKVIWDDG-RIHTRFNQT 608

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKIT 765
              TGRL+S++PNLQNIPI+ + G+KIR+AF S     +I +ADYSQIELR+LAHI    
Sbjct: 609 LAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKSTHEDYVILAADYSQIELRVLAHITGDP 668

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L Q F ++ D+H   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R
Sbjct: 669 TLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAVNFGIVYGISDYGLSQSLGITR 728

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I  Y + FPG+ +Y++      +Q GYVET+  RR +  +I S   ++R   ER
Sbjct: 729 KEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRGFAER 788

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AM+  H+ ++      ++LLQ+HDEL+FEVP++E+    + + 
Sbjct: 789 TAMNSPIQGSAADIIKLAMVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVE 848

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             M  A    + L VPL V       W
Sbjct: 849 EIMAHA----LQLDVPLSVESDYGKTW 871



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 13/301 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLL  K  G+  NA+ GF  +L K++    KE   +HF V 
Sbjct: 2   DKLILIDGNSLSFRAFYALPLLKNKA-GIHTNAVYGFARLLEKII----KEEQPTHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y DYK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHETYQDYKGGRQKTPPELSEQFPYIRQLIDAYQIQRYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A++ G    II+ D+DL QL +    +Y T K+   D++H   ++      G+ P +
Sbjct: 117 SREADQAGMQTIIITGDRDLTQLATDQVTIYYT-KKGVTDVDHYTPQFIAEKYNGLKPSQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+ L GDS DNIPG+ G+G KTA  LL ++G +E +  +   +  KK +E +    +
Sbjct: 176 IIDLKGLMGDSSDNIPGVAGVGEKTAMKLLNQFGTVEGVYDHIEEVSGKKLKEKLENSHD 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S+ L  +  D PIT+ LE   L +  +    I   K+LEF +L++ +    D   A
Sbjct: 236 DALMSKTLATINCDSPITVSLEDTRLPQKMDESAKIELFKSLEFRQLLDGMDVEADNATA 295

Query: 298 N 298
           +
Sbjct: 296 S 296


>gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397]
 gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397]
          Length = 877

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLNHMGIRHYDLAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455]
 gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455]
          Length = 870

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 364 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 422

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 423 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 478

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 479 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 538

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 539 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 597

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 598 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 657

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 658 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 717

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 718 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 777

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 778 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 837

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 838 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 868



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/286 (37%), Positives = 153/286 (53%), Gaps = 17/286 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH  
Sbjct: 1   MIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSHIL 53

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADDII 
Sbjct: 54  VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDIIG 113

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P +
Sbjct: 114 TLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTPAQ 173

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++   E
Sbjct: 174 FIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKE 233

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 234 QAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 279


>gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200]
          Length = 877

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
 gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
          Length = 880

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRTTLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDKHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTAAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKTSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031]
 gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031]
          Length = 877

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
 gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
          Length = 880

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 196/515 (38%), Positives = 308/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL-- 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +  +S    +I+  
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDIVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPEVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
 gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae
           TIGR4]
 gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I
 gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
          Length = 877

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
 gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
          Length = 961

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/433 (41%), Positives = 271/433 (62%), Gaps = 11/433 (2%)

Query: 544 ENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           EN     +  LL  PKLI E     + ++Y+ ++ P++  + +ME  GI+++++ L + S
Sbjct: 532 ENPEFTARAALLSAPKLISELSNLGMENLYKEIEMPLVSTLYEMEERGIKLNKEELHEYS 591

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+   + + EE IY ++GE+FN++SPKQLG ILF KL+ P G KTKTG + T+A  LE+
Sbjct: 592 EELDVLIKNYEEEIYKMAGEEFNINSPKQLGVILFEKLRLPYGKKTKTG-YSTSADVLER 650

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   D PI++ +L +RQ++K+KSTY D L  ++ K   R+H   +   T TGRL+S EPN
Sbjct: 651 IRLED-PIVERVLNYRQVAKLKSTYTDGLEGYV-KEDGRIHCKLNQLVTATGRLSSTEPN 708

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+ +LG++IR+AF+       + ADYSQIELRI+AH++    L + ++   DIHR
Sbjct: 709 LQNIPIRMELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQGEEDIHR 768

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV +++V+   RR+AK +NF IIYGIS F L   L I R +A  YI  YF  +
Sbjct: 769 ITASHVFGVPLDEVTDLQRRNAKAVNFGIIYGISSFGLGENLGISRKDAEKYINDYFKAY 828

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + +Y++       + G+V+T FGR     E+NS     R   ER A+N+P+QG+AADI
Sbjct: 829 PQVKKYLDSLVETGIEKGFVKTYFGRIRPIPELNSNNFMKRQFGERIAMNSPVQGTAADI 888

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM SV+  L+     +++LLQIHDEL+ E  EE+    ++++   M KA      L+
Sbjct: 889 IKIAMNSVNARLKSEFPDSRLLLQIHDELLIEAKEEDKEAVAKLLKEEMMKAA----ELK 944

Query: 960 VPLKVNIKVSNNW 972
           V L V++K   NW
Sbjct: 945 VKLSVDVKFGYNW 957



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 152/355 (42%), Gaps = 85/355 (23%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRK--------------------HDGLPVNAIAGFC 42
           K N+L L+DGSS +   F+ +  L R+                     DG   N + GF 
Sbjct: 2   KNNYLLLIDGSSLLSTQFFGS--LPRQILFAKTIEEKEKYYDKILQTADGFYTNGVFGFV 59

Query: 43  NMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102
             L K++    +E   SH A+ +D    TFR EIYPDYK NR +    L  Q  + +   
Sbjct: 60  KYLLKII----REQKPSHIAIAWDLSRDTFRREIYPDYKGNRVETMAPLSDQFAICQEVV 115

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVS----------- 149
           +AFGI       FEADD   T   +AE  K    V I++ D D +QLV            
Sbjct: 116 KAFGIAQFMSGTFEADDFCGT---LAEKFKSEIPVFIMTKDNDYLQLVDDKIKLWLMHGT 172

Query: 150 --PTTCLYDTVKEEK-----------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
              T  LY     +K            D E + K++G+ PE +  L+ + GD+ DNI G+
Sbjct: 173 AEKTDELYKKYGIDKSKVNAPDRCFVYDKELIKKEFGVEPENVNSLKGIMGDASDNIKGV 232

Query: 197 PGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI--------------LEY------ 236
           PG+G  TA LL+ +Y  ++  L  A   K KK  + I              L Y      
Sbjct: 233 PGVGEATARLLIGKYHTVDE-LYKAINNKDKKELDEIKKAWKEELGINRSPLSYLLKTSD 291

Query: 237 -----AETARLSRKLVMLRTDVPIT-IPLEHLILE-DCNGPRLISFLKALEFTKL 284
                 ++ARLS +L  ++ D+  T + L  L    D  G   I  +KALEF  +
Sbjct: 292 TELVGEKSARLSEQLATIKKDIDTTGVELSDLTANIDFEGGAKI--IKALEFNSV 344


>gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
 gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
          Length = 909

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 184/490 (37%), Positives = 300/490 (61%), Gaps = 11/490 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D+ L +Y+++  +S+++   IA+ + S    ++KE++  +   +    +SD+  +    E
Sbjct: 426 DVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSKKELIDKKHPMVTDGVLSDAGKKIMGYE 485

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            + +  +    L  KL   +++ +Y  ++ P +  +  ME+ GI +D   LK    ++  
Sbjct: 486 -AYISREAIQPLSDKLTELEMMDLYREIEIPTMFALHDMEVRGIHVDSKALKGYGDQLVG 544

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  L+E+IY  +GE+FN++SPKQLG +LF  +K     KTKTG + T+ + LE+I    
Sbjct: 545 RIEELQESIYKEAGEEFNINSPKQLGVVLFDHMKLEGAKKTKTG-YSTSVEVLEKIEHL- 602

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            PII  ILE+RQL+K+KSTYAD L N I +  QR+H  ++   T TGR++S EPNLQNIP
Sbjct: 603 YPIIPMILEYRQLTKLKSTYADGLANFI-QDDQRIHGKFNQTITATGRISSTEPNLQNIP 661

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           I+ +LG+ IR+ F+       + ADYSQIELR+LAH+++   L   +E + DIH   A+E
Sbjct: 662 IRMELGRAIRKVFLPEEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASE 721

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FG+ +++V+   RR AK +NF IIYG+S F L+  L+I R +A +YI RYF  +P + E
Sbjct: 722 VFGIPMDEVTSTQRRDAKAVNFGIIYGLSAFGLSQDLKISRKQAQEYIDRYFAMYPRVKE 781

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +++      + +GYV+T+F R     E+ S     RN  ER A+N+PIQG+AADI + AM
Sbjct: 782 FLDGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQRNFGERVAMNSPIQGTAADIIKIAM 841

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           + V+  L++ ++ +++LLQIHDEL+ E   +E     +I+ + M  A    ++LRVPL +
Sbjct: 842 VRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNA----VSLRVPLNI 897

Query: 965 NIKVSNNWQE 974
           +I+   +W E
Sbjct: 898 DIEQGASWYE 907



 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 170/288 (59%), Gaps = 13/288 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S + RAFY  P ++    GL  NAI GF N+++K L+    E   +H AV FD
Sbjct: 35  LLLIDGNSILNRAFYGLPDMTNSQ-GLHTNAILGFLNIMFKFLE----EENPTHLAVAFD 89

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++++ DYK  R  +P+ L  Q+P++R   +A  IP +  +G+EADD++ T + 
Sbjct: 90  LKAPTFRHKMFADYKGTRKGMPDELQEQVPVIREVLKAMNIPLMMEEGYEADDLLGTMSV 149

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           + E+ GF V I+S D+DL+QL +       P T    TV E+  + + V++K+ + P++ 
Sbjct: 150 LGEQAGFEVKIVSGDRDLLQLATKKVQIRIPKTNRAGTVVEDYYE-DDVLEKYQVTPKEF 208

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPGIPGIG KTA  L++E+ ++EN   +   +K  + + N+ EY + 
Sbjct: 209 IDVKALMGDTSDNIPGIPGIGEKTATKLIKEFQSIENAYAHIDEVKPNRAKNNLQEYYDQ 268

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
             +S++L  ++ D PI I  +   L D         LK LEF  ++ R
Sbjct: 269 GVMSKELATIKLDSPIDISFDDAKLGDLYTKEAYHMLKELEFKAILKR 316


>gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54]
 gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54]
          Length = 877

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL EYG+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEYGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
 gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
          Length = 887

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLNHMGIRHYDLAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
 gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
          Length = 877

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLSQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/285 (38%), Positives = 153/285 (53%), Gaps = 11/285 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R  +  GL  NAI GF  ML  LL+        SH  V
Sbjct: 6   LLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHILV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P + 
Sbjct: 122 LDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 182 IDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKEQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 242 AFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99]
          Length = 875

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 216/627 (34%), Positives = 333/627 (53%), Gaps = 62/627 (9%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIA----IAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
           K+E   S  F+ + D MD       A    +  + + + D T      I ++++      
Sbjct: 270 KIELFKSLEFRQLLDGMDVEADNATASRDFVPTTNMSKVDFTQLSEAAIHVEVA------ 323

Query: 439 STGKNTLTKEILSY---------------------LKKFFENEHFLKIGHNIKYDKLVLH 477
             G N L  E+L +                     L  + E+E   K  H+ K   + + 
Sbjct: 324 --GPNYLKDELLKFGLYDGEQYVVIPFDKVNEYPELVAWLEDETTQKWVHDAKKTYIAMK 381

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL---KSRKSSIPIDK 532
           R  I++     D ML SY++D  R+  D+ S+   +  ++ + ++    K +   IP D 
Sbjct: 382 RSDIAIENVVFDTMLASYIIDPSRTIEDVQSVMTHFDQTFVQDDVSVYGKGKSFHIPEDD 441

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LDKPMIDVVSQMEIT 586
           I D  +          IL    +++P+++   +L  +E+      ++ P+  ++S+ME  
Sbjct: 442 ILDKHIAS--------ILDAIHVVQPQMMT--ILEAHEQTSLLSEIELPLALILSEMEYI 491

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI  D D LK++   I   L  L E I++ +GEKFN++SPKQLG ILF KL+ P   KTK
Sbjct: 492 GIHTDIDTLKEMETVIQTELDQLIEQIHEQAGEKFNINSPKQLGVILFEKLELPVIKKTK 551

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T    LE++    +PII NIL +R LSK++STY + L   I     R+HT ++  
Sbjct: 552 TG-YSTAVDVLEKLQNA-HPIIDNILTYRTLSKLQSTYVEGLQKVIWDDG-RIHTRFNQT 608

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKIT 765
              TGRL+S++PNLQNIPI+ + G+KIR+AF S     +I +ADYSQIELR+LAHI    
Sbjct: 609 LAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKSTHEDYVILAADYSQIELRVLAHITGDP 668

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L Q F ++ D+H   A ++F V   +V+  MRR AK +NF I+YGIS + L+  L I R
Sbjct: 669 TLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAVNFGIVYGISDYGLSQSLGITR 728

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I  Y + FPG+ +Y++      +Q GYVET+  RR +  +I S   ++R   ER
Sbjct: 729 KEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRGFAER 788

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AM+  H+ ++      ++LLQ+HDEL+FEVP++E+    + + 
Sbjct: 789 TAMNSPIQGSAADIIKLAMVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVE 848

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             M  A    + L VPL V       W
Sbjct: 849 EIMAHA----LQLDVPLSVESDYGKTW 871



 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 13/301 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLL  K  G+  NA+ GF  +L K++    KE   +HF V 
Sbjct: 2   DKLILIDGNSLSFRAFYALPLLKNKA-GIHTNAVYGFARLLEKII----KEEQPTHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y DYK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHETYQDYKGGRQKTPPELSEQFPYIRQLIDAYQIQRYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A++ G    II+ D+DL QL +    +Y T K+   D++H   ++      G+ P +
Sbjct: 117 SREADQAGMQTIIITGDRDLTQLATDQVTIYYT-KKGVTDVDHYTPQFIAEKYNGLKPSQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+ L GDS DNIPG+ G+G KTA  LL ++G +E +  +   +  KK +E +    +
Sbjct: 176 IIDLKGLMGDSSDNIPGVAGVGEKTAMKLLNQFGTVEGVYDHIEEVSGKKLKEKLENSRD 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            A +S+ L  +  D PIT+ LE   L +  +    I   K+LEF +L++ +    D   A
Sbjct: 236 DALMSKTLATINCDSPITVSLEDTRLPQKMDESAKIELFKSLEFRQLLDGMDVEADNATA 295

Query: 298 N 298
           +
Sbjct: 296 S 296


>gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
 gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
          Length = 881

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 319/539 (59%), Gaps = 39/539 (7%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQ 510
            K+F E    LK+ ++ K  K++L   GI+++   F D  L  Y+L S    ++I++IA 
Sbjct: 363 FKEFLEKTP-LKV-YDFKRAKVLLSHLGITLQNPAF-DSRLAKYLL-STVEDNEISTIAS 418

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ-----LWLLLRPKLIVEKL 565
            +            + ++P+D++   +  + AI    V+L+     + +LL  +  + + 
Sbjct: 419 LY-----------SQIALPLDEVVYGKGVKRAIPERAVLLEHLALKVAVLLDTEEPMVEQ 467

Query: 566 LHVYERLD------KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L  +++LD      +P+  V+++MEI GI++++  L+ +  E    L  L + IY+L+GE
Sbjct: 468 LQAHDQLDLLYDMEQPLAAVLAKMEIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGE 527

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SPKQLG ILF KL+ P     KT    +TA D+ +      PI+  ILE+RQ++K
Sbjct: 528 EFNINSPKQLGVILFEKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAK 587

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           I+STY   L + I +   ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ 
Sbjct: 588 IQSTYVIGLQDWILE-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVP 646

Query: 740 PPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK---VSP 795
                 L+S+DYSQIELR+LAHI+    L   F++  DIH   A  +F  NIEK   V+P
Sbjct: 647 EEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVF--NIEKPEDVTP 704

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR+AK +NF ++YGIS F L+  L I R EA  YI+ YF R+PGI +Y+E+     R 
Sbjct: 705 NDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARD 764

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYVET+F RR    +INS   ++R   ER AIN+PIQGSAADI + AMI + ++LE   
Sbjct: 765 KGYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALEAGA 824

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             TKMLLQ+HDE+V +VP +E+    +++  +ME A    I L VPL+ +      W E
Sbjct: 825 YKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESA----IELAVPLEADENEGKTWYE 879



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 167/328 (50%), Gaps = 17/328 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A    + R    +GL  NA+ GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYHQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI+S DKDL+QL    T +  + K     E+    ++ +K
Sbjct: 117 DDIIGTLDKMAETTSVPFDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLKEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+  IG KT   LL +YG+L+ I  +   +K  K +E
Sbjct: 177 MGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLKYGSLDGIYEHIDEMKASKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   E A LS+ L  + T+ PI I L+ +     +   L  F + + F +L   +   
Sbjct: 237 NLINDKEQAYLSKTLATIDTNAPIEIGLDDITYTGPHLENLAKFYEEMGFKQLRQAL--- 293

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETE 319
            D       PV +D    E     + TE
Sbjct: 294 -DLSGEEAAPVAIDYTEVEQVASDMLTE 320


>gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375]
          Length = 877

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585]
 gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585]
          Length = 877

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 IKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
 gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
          Length = 880

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  R  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVR-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025]
 gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025]
          Length = 878

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 202/516 (39%), Positives = 304/516 (58%), Gaps = 19/516 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL- 521
           ++ K  K++L   GI +     D  L  Y+L S   +++I++IA+ +      T  ++  
Sbjct: 372 YDFKRGKVLLSHLGIDLLTASFDSRLAKYLL-STVENNNISTIARLYTDLPLETDDDVYG 430

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP   +    +  H  +  +V+L     +R KL     L +   ++ P+ +V++
Sbjct: 431 KGAKRAIPEKNV----LLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLA 486

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L+ +       L +L + IYDL+GE FN++SPKQLG ILF KL  P 
Sbjct: 487 KMEIAGISVRKETLQDMERANEIELQALTQEIYDLAGEAFNINSPKQLGVILFEKLGLPL 546

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            A  KT    +TA D+ +     +PI+  ILE+RQ++K++STY   L + I+    ++HT
Sbjct: 547 SATKKTKTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSIS-FDGKIHT 605

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P  K+  L+S+DYSQIELR+LA
Sbjct: 606 RYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PEWKESVLLSSDYSQIELRVLA 664

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLA 818
           HI+    L   F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA
Sbjct: 665 HISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLA 724

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L I R  A +YI+ YF R+PGI  Y+++     R  GYVET+F RR    +INS   +
Sbjct: 725 NNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFN 784

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           IR+  ER AIN+PIQGSAADI + AMI + ++L+     ++MLLQ+HDE+V EVP  E+ 
Sbjct: 785 IRSFAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELE 844

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +++  +ME A    I L VPL  +      W E
Sbjct: 845 AIQKLVKETMESA----IELSVPLVADENAGQTWYE 876



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/288 (39%), Positives = 160/288 (55%), Gaps = 21/288 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M  +  L L+DGSS  YRAF+A   L  + D      GL  NAI GF  ML  ++    K
Sbjct: 1   MTNKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNPAGLHTNAIYGFHLMLDHMM----K 53

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E++ DYKA R K PE    QLP +R    A G+   +++ 
Sbjct: 54  RVEPTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLTALGVSYYDLEN 113

Query: 115 FEADDIIATYTYIAEKE-GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           +EADDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+   ++++
Sbjct: 114 YEADDIIGTLDKLAENEDAYDVTIVSGDKDLIQLTDSNTTVEISKKGVAEFEEFTPDYLM 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P++ + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 174 EKMGLTPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEHGSLEAIYEHIDSFKTTKM 233

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           +EN++   E A LS+ L  + T  PITI L+ +   D +GP+L + +K
Sbjct: 234 KENLINDKEKAFLSKTLATIDTQAPITITLDDI---DYSGPQLDALVK 278


>gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
 gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
          Length = 880

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 914

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 196/507 (38%), Positives = 304/507 (59%), Gaps = 8/507 (1%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           I Y+   L   GIS +     M+++Y L S ++  D   IA    S    +  K+    +
Sbjct: 413 ISYNFKALLNLGISFKSMYMDMMIAYHLISSQTKID-PIIAITEYSKLEPKDFKATFGKV 471

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++ I+     ++  + S  IL ++  L   L  E L  V    + P+I V+S ME  GI
Sbjct: 472 NVELITTQDFSKYLSDISIGILAIYDELNYLLKKEDLYKVLMENEMPLIPVLSLMERKGI 531

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF K+  PSG KTKTG
Sbjct: 532 EIDVQYFKNYSVELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKMNLPSGKKTKTG 591

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T    LE +      I + +L++R+L+K+K+TY D+LP  +++ + R+HT ++   T
Sbjct: 592 -YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTSFNQIGT 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP+KTD G KIR  FI+   K L+S DYSQ+ELR+L  ++K   L 
Sbjct: 650 ATGRLSSSDPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLI 709

Query: 769 QVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           + +    D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP  +
Sbjct: 710 EAYREEKDLHDLTARRIFNLADSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKD 769

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A++YIK+YF ++P +  + ++   F  ++GYV+T+FGR+ +   I+S   +I++  ER A
Sbjct: 770 ASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMA 829

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N  IQG+AA++ ++ M+ V+  L+D K    +LLQ+HDEL+FEV +  +   S+I+   
Sbjct: 830 VNTVIQGTAAEVLKKVMVKVYDVLKD-KEDIALLLQVHDELIFEVEKSSVEKYSEILADI 888

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+     +    V L +NI +  NW E
Sbjct: 889 MKNTVQLE---DVKLNININIGKNWAE 912



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 146/293 (49%), Gaps = 18/293 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + + +A+ F V     
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +   R EIY DYK+NR   PE L+ Q+P +     AF I   +I+G+EADD++ +     
Sbjct: 61  SSLKRTEIYSDYKSNRQSAPEDLITQIPRIEEVLDAFNINRYKIEGYEADDVLGSLAKKL 120

Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKI----DIEHVIKKWGIPPEKMVC 181
            K+   V I++ DKDL QLV        L    + EK     + + V+   G+ PEK+  
Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGAEGEKFGTLKNSDDVVNYLGVVPEKIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +N++  
Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYENIDNLKSIDGIGPSLIKNLINE 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            + A +SR+L  + T++ I +  E  +    +  RL S  KALEF   I ++ 
Sbjct: 241 KDIAFMSRELAKIFTNLDIDVE-ESGLQYGMDRERLYSLCKALEFKMFIKKLG 292


>gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
 gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
          Length = 879

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 194/492 (39%), Positives = 297/492 (60%), Gaps = 17/492 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543
           DI + +Y++D   S  +I  I   +L     + +EI  K  K S+P  ++ +S + + A 
Sbjct: 398 DIKIANYLIDV-TSKSEIDKIVFNYLGEIISSNEEIYGKGAKRSLPTQEVLNSYIAKIAA 456

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
                IL++  L+   L  E +L +Y+ ++  +  V++ ME  GI + +  L ++S E  
Sbjct: 457 S----ILEVKPLMIKSLEEENMLDLYKNIEIKVARVLANMEFEGIHVSKKALDEMSHEFD 512

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + +  LE +IY L+G +FN++SPKQLG +LF  L  P   KTKTG + T  + LEQ+   
Sbjct: 513 ERIKVLEGSIYTLAGSEFNIASPKQLGVVLFEDLGLPVVKKTKTG-YSTAVEVLEQLQY- 570

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            + II  I+E+R L+K+ STYA  L   I  R  ++HT Y    T TGRL+S+ PNLQNI
Sbjct: 571 KHDIIPLIMEYRTLTKLNSTYAKGLVKDIT-REGKIHTRYEQTLTQTGRLSSVNPNLQNI 629

Query: 724 PIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           P + + G+KIR+AFI     ++I S DYSQIELR+LAHIA+   +   F++ +DIH   A
Sbjct: 630 PTRIEEGKKIRKAFIPASNDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTA 689

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +++ GV +++V+P MRR AK +NF I+YGIS F L+  L I R  A ++I++Y   F G+
Sbjct: 690 SDVNGVPLDEVTPTMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIEKYLETFKGV 749

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+     F +++GYVET++ RR    EIN+    I N+N R A+N PIQG+AADI + 
Sbjct: 750 DKYMTDIVKFAKEHGYVETLYNRRRSLPEINAKNKIIANLNARIAMNTPIQGTAADIIKI 809

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMIS +  +E+ K+  K+LLQ+HDEL+F+V ++ +   +  +V  ME+A     NL V L
Sbjct: 810 AMISAYNYIEESKVDAKLLLQVHDELIFDVSKDILEEFTDKMVAIMEEAA----NLDVKL 865

Query: 963 KVNIKVSNNWQE 974
           K       +W E
Sbjct: 866 KAEASSGPSWYE 877



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 167/289 (57%), Gaps = 10/289 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG+S  YRAFYA P L  K  GL  N++ GF  ML ++L++++      +  V 
Sbjct: 2   DKIILLDGNSLSYRAFYAMPALKNKK-GLYTNSVYGFTLMLERILEDTK----PKYALVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y  YK  R K P  L+ Q   VR   +++GI   E   +EADDII +Y
Sbjct: 57  FDKGKETFRHKSYEAYKGTRDKTPTELVEQFGYVRELIESYGIKYEEHLDYEADDIIGSY 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDI---EHVIKKWGIPPEKMV 180
             IAEK G  V I+S DKDL QL S    +Y T +   +ID    E + +K+G+ P++++
Sbjct: 117 AKIAEKAGLEVIIVSGDKDLTQLASDNITVYYTKRGVTEIDYYTPEFINEKYGLTPQQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPGIPG+G KTA  LL EY N+EN+L N   I  KK +E + E  E A
Sbjct: 177 DMKGLMGDKSDNIPGIPGVGEKTAIKLLTEYENVENVLENIDNISGKKLKERLTEGKEDA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            LS+KL  + TDVP+   +E L  ++    +   F K LEF   + +++
Sbjct: 237 ILSKKLATIFTDVPVDNKIEDLTFKEDREKKKELFEK-LEFVSFLRKLS 284


>gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1]
 gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus
           pyogenes SSI-1]
          Length = 880

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL ++G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHKFGSLEGIYEHIDGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
 gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
          Length = 880

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
 gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
          Length = 877

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 IKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELMDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159]
 gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159]
          Length = 878

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 202/516 (39%), Positives = 304/516 (58%), Gaps = 19/516 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL- 521
           ++ K  K++L   GI +     D  L  Y+L S   +++I++IA+ +      T  ++  
Sbjct: 372 YDFKRGKVLLSHLGIDLPTASFDSRLAKYLL-STVENNNISTIARLYTDLPLETDDDVYG 430

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP   +    +  H  +  +V+L     +R KL     L +   ++ P+ +V++
Sbjct: 431 KGAKRAIPEKNV----LLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLA 486

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L+ +       L +L + IYDL+GE FN++SPKQLG ILF KL  P 
Sbjct: 487 KMEIAGISVRKETLQDMERANEIELQALTQEIYDLAGEAFNINSPKQLGVILFEKLGLPL 546

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            A  KT    +TA D+ +     +PI+  ILE+RQ++K++STY   L + I+    ++HT
Sbjct: 547 SATKKTKTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSIS-FDGKIHT 605

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759
            Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P  K+  L+S+DYSQIELR+LA
Sbjct: 606 RYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PEWKESVLLSSDYSQIELRVLA 664

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLA 818
           HI+    L   F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA
Sbjct: 665 HISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLA 724

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L I R  A +YI+ YF R+PGI  Y+++     R  GYVET+F RR    +INS   +
Sbjct: 725 NNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFN 784

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           IR+  ER AIN+PIQGSAADI + AMI + ++L+     ++MLLQ+HDE+V EVP  E+ 
Sbjct: 785 IRSFAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELE 844

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +++  +ME A    I L VPL  +      W E
Sbjct: 845 AIQKLVKETMESA----IELSVPLVADENAGQTWYE 876



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/288 (39%), Positives = 159/288 (55%), Gaps = 21/288 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54
           M  +  L L+DGSS  YRAF+A   L  + D      GL  NAI GF  ML  ++    K
Sbjct: 1   MTNKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNPAGLHTNAIYGFHLMLDHMM----K 53

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H  V FD    TFR E++ DYKA R K PE    QLP +R    A G+   +++ 
Sbjct: 54  RVEPTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLTALGVSYYDLEN 113

Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           +EADDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+   ++++
Sbjct: 114 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLTDSNTTVEISKKGVAEFEEFTPDYLM 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P++ + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 174 EKMGLTPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEHGSLEAIYEHIDSFKTTKM 233

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           +EN++   E A LS+ L  + T  PITI L+ +   D +GP+L +  K
Sbjct: 234 KENLINDKEKAFLSKTLATIDTQAPITITLDDI---DYSGPQLDALAK 278


>gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457]
 gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457]
          Length = 575

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 69  YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 127

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 128 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 183

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 184 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 243

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 244 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 302

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 303 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 362

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 363 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 422

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 423 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 482

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 483 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 542

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 543 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 573


>gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
 gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
          Length = 880

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 300/510 (58%), Gaps = 18/510 (3%)

Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK---SS 527
           ++L   R GIS R    D  + +Y+L+  +  +    IA+ + S     ++K R      
Sbjct: 380 EQLAFLRAGISDRAKIADAAIGAYLLNPLKGQYPCEDIAKDYASL----MIKGRAELFGK 435

Query: 528 IPIDKISDSQVQE---HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
            P+ K+ + Q +E   +A   +        ++  KL   ++L ++  ++ P++  +  M+
Sbjct: 436 APLAKVMEEQPEELAQYACYLAYTAKAAMPVILQKLRENQMLELFRDMEMPLVYTLYDMQ 495

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI+++   LK    E+   ++ LE+ IY  +GE+FN++SPKQLG ILF KLK P   K
Sbjct: 496 EVGIRVNAQELKAYGEELYVRIVELEQEIYRDAGEEFNINSPKQLGVILFEKLKLPGAKK 555

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TK+G + T A  LE++   D  I+  ILE+RQL+K+KSTYAD L   I     R+H  ++
Sbjct: 556 TKSG-FSTAADVLEKL-APDYAIVAKILEYRQLAKLKSTYADGLAGFIAA-DGRIHGTFN 612

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
              T TGR++S +PNLQNIP++T+LG+ +R+ FI+     LI ADYSQIELR+LA ++  
Sbjct: 613 QTITATGRISSTDPNLQNIPVRTELGRLLRKVFIAKEGYVLIDADYSQIELRVLAAMSGD 672

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F ++ DIHR+ A+++F +  ++V+P  RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 ETLIAAFRDNADIHRLTASQVFHIPFDEVTPLQRRNAKAVNFGIVYGISAFGLSEDLHIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA +YI +YF  +P + ++++      ++ GY ET+F RR    E+ S     R+  E
Sbjct: 733 VKEAGEYIDKYFQTYPKVKDFLDNAVKEAKEKGYAETLFHRRRPVPELKSGNFMQRSFGE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N+PIQG+AADI + AMI V++ L   +  ++++LQIHDEL+ E    E+    +++
Sbjct: 793 RVAMNSPIQGTAADIIKIAMIRVNERLRAEQFQSRLILQIHDELLIEAEPSEVEAVKELL 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M  A    ++L V +++++K  N+W E
Sbjct: 853 AQEMVNA----VHLSVAMEIDMKTGNSWYE 878



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 176/299 (58%), Gaps = 15/299 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG S + RA++  P L+    GL  NA+ GF N+++K+L   + +    +FAV
Sbjct: 2   QGKLVLIDGHSILNRAYFGVPDLTNSQ-GLHTNAVYGFLNIMFKILDEEQPD----YFAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+++Y  YK  R  + E L  Q+P+++    A G+P + ++G+EADD++ T
Sbjct: 57  AFDLHAPTFRHKMYDAYKGTRKPMQEELREQVPVMKEMLTAMGVPLMMLEGYEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPE 177
               AE +G  V+IIS D+DL+QL +  T +     K+ K +IE      V++K+ + P 
Sbjct: 117 AAKKAEADGLTVSIISGDRDLLQLATDRTKIRIPKTKKGKTEIEDYNTAEVVEKYMVTPP 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V L+AL GD+ DNIPGIPG+G KTA  ++ EYG++EN   +   IK  K +E++ E+ 
Sbjct: 177 QIVDLKALMGDASDNIPGIPGVGEKTAGKIISEYGSIENAYAHVEEIKPNKAKESLREHY 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           + A+LS+KL  + T+ P T+ +E   + +          K LEF  ++ R    + CDA
Sbjct: 237 DLAQLSKKLAKINTESPFTLDMEQAKMGNLFTQEAFELCKKLEFRNILPR----FSCDA 291


>gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
          Length = 881

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 315/539 (58%), Gaps = 39/539 (7%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQ 510
            K+F E    LK+ ++ K  K++L   GI+++   F D  L  Y+L S    ++I++IA 
Sbjct: 363 FKEFLEKTP-LKV-YDFKRAKVLLSHLGITLQNPAF-DSRLAKYLL-STVEDNEISTIAS 418

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ-----LWLLLRPKLIVEKL 565
            +   T           +P+D++   +  +  I    V+L+     + +LL  +  + + 
Sbjct: 419 LYSQIT-----------LPLDEVVYGKGAKKIIPEKAVLLEHLARKVAVLLDTEEPMTEQ 467

Query: 566 LHVYERLD------KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L  +++LD      +P+  V+++MEI GI++++  L+ +  E    L  L + IY+L+GE
Sbjct: 468 LKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVERQTLQDMQVENEAVLERLTQEIYELAGE 527

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SPKQLG ILF KL+ P     KT    +TA D+ +      PI+  ILE+RQ++K
Sbjct: 528 EFNINSPKQLGVILFEKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAK 587

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           I+STY   L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ 
Sbjct: 588 IQSTYVIGLQDWI-LEDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVP 646

Query: 740 PPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK---VSP 795
                 L+S+DYSQIELR+LAHI+    L   F++  DIH   A  +F  NIEK   V+P
Sbjct: 647 EEVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVF--NIEKPEDVTP 704

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR+AK +NF ++YGIS F L+  L I R EA  YI+ YF R+PGI +Y+E+     R 
Sbjct: 705 NDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARD 764

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYVET+F RR    +INS   ++R   ER AIN+PIQGSAADI + AMI + ++LE   
Sbjct: 765 KGYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALEAGA 824

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             TKMLLQ+HDE+V +VP +E+     ++  +ME A    I L VPL+ +      W E
Sbjct: 825 YKTKMLLQVHDEIVLQVPTDELAAIKALVKETMESA----IELAVPLEADENEGKTWYE 879



 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/321 (37%), Positives = 168/321 (52%), Gaps = 21/321 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+K+N L L+DGSS  +RAF+A  L +     +  +GL  NA+ GF  ML  LL+  +  
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE     F VTI+S DKDL+QL    T +  + K     E+    ++ 
Sbjct: 115 EADDIIGTLDKLAESTSVPFDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLK 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+L+ I  +   +K  K 
Sbjct: 175 EKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEYGSLDGIYEHIDEMKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +EN++   E A LS+ L  + T+ PI I L+ +     +   L  F + + F +L  R A
Sbjct: 235 KENLINDKEQAYLSKTLATIDTNAPIEIGLDDITYTGPHLENLAKFYEDMGFKQL--RQA 292

Query: 290 TTYDCDAANIEPVVLDINTTE 310
                +AA   PV LD    E
Sbjct: 293 LDLSEEAAT--PVALDYTEVE 311


>gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1]
 gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1]
          Length = 899

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 278/990 (28%), Positives = 466/990 (47%), Gaps = 118/990 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ +     
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKDKKN---M 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
                  +    T R+E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 62  PFIVFALESQTKTKRSEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
              +A LS++L  L         ++      C  P     LK  +  K    ++T  D +
Sbjct: 237 DKGSAFLSKELATLERGC-----IKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +   P++LD     N  I     I             L + ++  N+ +  + + LE  
Sbjct: 292 NSPT-PLILD-----NAPILDSVPI-------------LDNASALDNAPKKSRLIVLENT 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + LS +                      LE + +++ +I    +     K +A+A    D
Sbjct: 333 ELLSAF----------------------LEKLKNSNARIFMRLVLNKEKKVLALAFLYED 370

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473
           Q      + E +F   S+   Q++                FF+  +H   IGH++K    
Sbjct: 371 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHACIIGHDLKPLLS 413

Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
            +  +Y + +     +D  +++++ +  +   D  ++ +++L          ++  IP +
Sbjct: 414 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD--AVLKEYL----------KEDLIPHE 461

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYERLDKPMIDVVSQMEI 585
           KI D +    A ++  + L+L  L R     EK      LL +   ++ P + V+  ME 
Sbjct: 462 KIKDFKTTSKAEKSEQLSLELNALKRLCEYFEKGGLEENLLSLARGVETPFVKVLMDMEF 521

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G +ID    K++  E    L  LE  I DL G  FNL+SPKQL ++L+ KL+ P   K+
Sbjct: 522 QGFKIDAPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLSEVLYEKLELPQN-KS 580

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            +   K   + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +  
Sbjct: 581 HSTDEKNLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFIQ 634

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKI 764
             T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH ++ 
Sbjct: 635 TGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQD 694

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    DIH   +  +FG ++ K   + R  AK+INF ++YG+   +L+  L I 
Sbjct: 695 KDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYGMGSKKLSETLNIS 751

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D  N     ++    
Sbjct: 752 LNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYL 810

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q I
Sbjct: 811 REGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALELQQEI 869

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +     P   LRVPL+ +  V+N W E
Sbjct: 870 QRILNDEVYP---LRVPLETSAFVANRWNE 896


>gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104]
 gi|332204058|gb|EGJ18123.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47901]
          Length = 877

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39]
 gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I
 gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39]
          Length = 877

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
 gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
          Length = 900

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 190/516 (36%), Positives = 309/516 (59%), Gaps = 27/516 (5%)

Query: 469 IKYD-KLVLH---RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEI 520
           I YD K  LH     G+++ G + D M+ +++ DS  +S     I +K+    + T  E+
Sbjct: 400 IVYDVKACLHLADGAGLTINGMKIDAMIAAFLCDSTLTSDQ--KIREKFGLTETVTMDEV 457

Query: 521 L-KSRKSSIPIDKISDSQVQEH-AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
             K  K  +P     + Q+Q     +   +I  LW    PKL   +++ ++  ++ P+  
Sbjct: 458 YGKPGKMKLP-----EPQLQRQLCAQKIQLIDALWKDSEPKLKEMEIVSLFYDVEMPLAA 512

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+ +ME  GI+ID   L  ++ +    L +L + IY  +GE FN++SPKQLG++LF KL 
Sbjct: 513 VLYKMEKEGIRIDSQTLDDIARQTQARLDALTDAIYAAAGETFNINSPKQLGEVLFDKLG 572

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P+  K ++    T+A  LE++  G +PII ++LE+R+  K+ STYA+ L  +I+    R
Sbjct: 573 LPASGKKRS----TSADVLEKL-LGVHPIIADLLEFRKYQKLYSTYAEGLKKYIHPDG-R 626

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +HT Y+  +T TGRL+S EPNLQNI ++ +  +++R+AF+      L+++DYSQIELR+L
Sbjct: 627 IHTIYNQCATQTGRLSSTEPNLQNISVRDEESREVRKAFLPSEGNVLVASDYSQIELRML 686

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    L   F +++DIH   A+++F + +++V  + RR AK +NF I+YGIS F L+
Sbjct: 687 AHMADEQGLLDAFRHAVDIHTKTASDVFQIPLDQVDAKHRRQAKAVNFGIVYGISDFGLS 746

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A ++I+RY   +P I +Y+++  +F +++GY  T+ GRR    EI+     
Sbjct: 747 QQLDISRAQAKEFIERYLQSYPNISKYMDQVISFCQEHGYTATMLGRRREVPEIHDKNYM 806

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   +RAA+NAPIQGSAAD+ + AMI + K++ +  L +KM+LQ+HDEL+F+    E+ 
Sbjct: 807 TREFGKRAAMNAPIQGSAADLIKLAMIRIDKAISEKGLQSKMILQVHDELIFDALPSELD 866

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               II   ME A    + L+VPL    K+ + W E
Sbjct: 867 ALCAIIQEGMEHA----MELKVPLVAETKIGDTWYE 898



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 170/291 (58%), Gaps = 17/291 (5%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG+S ++RAFYAT   P+ +    G+P NAI GF  M+ K +Q  + +++     V
Sbjct: 34  MLLVDGNSMLFRAFYATFMRPMSTST--GIPTNAIYGFAMMINKAVQIIQPDAML----V 87

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E++ +YK  R + P+ L+ Q P+VR   +A GI   E+   EADDII +
Sbjct: 88  AFDKGKHTFRHELFAEYKGGRKETPDALVEQFPIVREYLEAAGIKQFEMTDIEADDIIGS 147

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              I +   + + ++S+D+D++QL+  TT ++   K     E++ +E + +K GI P+++
Sbjct: 148 M--IKKYPDWDINVLSSDRDMLQLIDETTSVWLMKKGISDIEEMTVESLKEKMGITPDQI 205

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L+ L GD+ DNIPGIP +G KTA  LL+++G +EN++ N  ++K  K ++N+  + + 
Sbjct: 206 RDLKGLMGDASDNIPGIPKVGEKTALKLLEQFGTVENLIANTDQLK-GKLKDNVEAFKDQ 264

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           A LS++L  ++TDV I    E         P L  F    E   L ++++T
Sbjct: 265 ALLSKRLATIKTDVEIPFETEEFTFHITPEP-LRQFYVRYEMNSLASKLST 314


>gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
 gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
          Length = 811

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 189/503 (37%), Positives = 297/503 (59%), Gaps = 36/503 (7%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKISD-------- 535
           D  +  Y+L+  +SS+    IA+++L      TR ++L         +K SD        
Sbjct: 327 DTGVAVYLLNPLKSSYTFDDIAREYLDGALLPTRTDLLGKDSLKAAWEKSSDGLMSYACH 386

Query: 536 ----SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
               +      IEN+    ++W             +VY  ++ P+I  +  ME  GI++ 
Sbjct: 387 LAYTAYATREPIENALKETEMW-------------NVYREIELPLIFTLDSMEKWGIRVK 433

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + LK    ++   +  LE+ IY+ +GE+FN++SPKQLG ILF K+  P G KTKTG + 
Sbjct: 434 GEELKSYGEKLQVRIAELEKLIYEQAGEEFNINSPKQLGVILFEKMGIPGGRKTKTG-YS 492

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE++   + PI+ +ILE+RQL+K+KSTYAD L   I +   R+H+ ++   T TG
Sbjct: 493 TAADILEKL-APEQPIVNDILEYRQLTKLKSTYADGLSAVI-EADGRIHSTFNQTITATG 550

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R++S EPNLQNIP++ +LG+ IR+ F+       + ADYSQIELR+LAH++    L Q +
Sbjct: 551 RISSTEPNLQNIPVRMELGRLIRKVFVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAY 610

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
             + DIHR+ A+++F V  ++V+   RR+AK +NF I+YGIS F L+  L I R EAA+Y
Sbjct: 611 REAEDIHRLTASQVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEY 670

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++YF  +P I  +++      ++ GYV T+ GRR    E+ S     R+  ER A+N+P
Sbjct: 671 IEKYFETYPKIKGFLDGLVADGKEKGYVSTMLGRRRPIPELKSGNFMQRSFGERVAMNSP 730

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AM  V++ L++  L ++++LQ+HDEL+ E  +EE+ T S+I+   M+ A
Sbjct: 731 IQGTAADIIKIAMNRVYQRLKEEGLQSRLVLQVHDELLIETKKEEVETVSRILEEEMKGA 790

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               ++L V L V++   N+W E
Sbjct: 791 ----VHLSVELDVDMHEGNSWYE 809



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
           +Y  YK  R  +PE L  Q+PL++    A GI  +   G+EADD++ T    +EKEG  V
Sbjct: 1   MYEAYKGTRKPMPEELREQVPLMKEMLTAMGIKIVSKAGYEADDLLGTLAVRSEKEGMDV 60

Query: 136 TIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           TI+S D+DL+QL +       P T    T  E       V++K+ + P +++ L+AL GD
Sbjct: 61  TILSGDRDLLQLATEKVMIRLPKTSRGKTTIE-NFHAAEVLEKYQVTPPQIIELKALMGD 119

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           S DNIPGIPG+G KTA  ++ E+G +EN  ++   IK  K RE++ E+ + A LS+ L  
Sbjct: 120 SADNIPGIPGVGEKTATKMIVEFGTIENAYVHLEEIKPNKARESLREHYDLAELSKALAT 179

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           + T+ P+    E   L +   P      K LEF  L+ R  T+
Sbjct: 180 INTESPLEYVYEEARLGNLYTPEAYQLCKQLEFKNLLGRFDTS 222


>gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
 gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
          Length = 806

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 194/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 300 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 358

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 359 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 414

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 415 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 474

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 475 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 533

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 534 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 593

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 594 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 653

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R ++  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 654 NLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 713

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 714 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 773

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 774 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 804



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 123/224 (54%), Gaps = 12/224 (5%)

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG--F 133
           +Y DYKA R K P+    Q   +R    A GI   E++ +EADDII T   +AE+    F
Sbjct: 1   MYADYKAGRAKTPDEFREQFSYIREMLTALGIAYYELEHYEADDIIGTLDKMAERTEVPF 60

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
            VTI+S DKDL+QL    T +  + K     E+    ++++K G+ P + + L+AL GD 
Sbjct: 61  DVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEKMGLTPNQFIDLKALMGDK 120

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DNIPG+  IG KT   LL E+G+LE I  +    K  K +EN++   + A LS+ L  +
Sbjct: 121 SDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKTSKMKENLINDRDQAFLSKTLATI 180

Query: 250 RTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLINRVAT 290
            T  PITI L+ ++    NGP + S   F   ++F +L   +A+
Sbjct: 181 NTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKKGLAS 221


>gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2]
 gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 196/544 (36%), Positives = 321/544 (59%), Gaps = 30/544 (5%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502
            L +   + L+K+ E+    K G +    +L L   GI   G   D+ L +Y+LD   ++
Sbjct: 362 ALQQPFTAELRKWLEDADKPKNGFDTHKIELALGWRGIEWHGAAFDVQLAAYLLDPTDTN 421

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPID----------KISDSQ-VQEHAIENSNVILQ 551
             + ++  ++            +SS+P D          K+ D++ +  H    ++ + +
Sbjct: 422 LTLNALCDRY-----------GQSSVPHDEAVYGKGAKFKVPDNETLHRHLSAKADAVRK 470

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L  L+R  L    +  +Y  L++P+  +++ ME  GI++++  L+++ +E+   L +   
Sbjct: 471 LTSLMRADLEKRGMNELYFELEQPLSVILAGMERQGIKVEKAELERLGSELETKLSAAVS 530

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            IY L+  +FN+ SPKQLG++LF KL  P   KTKTG + T A+ LE++    + I+  I
Sbjct: 531 EIYRLAEMEFNIGSPKQLGEVLFEKLGLPVQKKTKTG-YSTDAEVLEKL-APYHEIVPLI 588

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L +R LSK++STY + L   +   T ++HT+Y      TGRL+S  PNLQNIPI+ + G+
Sbjct: 589 LHYRTLSKLQSTYIEGLLKEVRPETGKIHTYYRQTIAATGRLSSQFPNLQNIPIRLEEGR 648

Query: 732 KIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           +IR+AF+ S P   +++ADYSQIELR+LAHI+    L + F + +DIH   A ++FGV+ 
Sbjct: 649 QIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDVFGVSA 708

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++V   MRR AK +NF I+YGIS F L+  L I R EAA +I++YF  F G+ +Y++   
Sbjct: 709 DQVDSNMRRSAKAVNFGIVYGISDFGLSQNLNITRKEAAKFIEQYFEVFQGVRKYMDDIV 768

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              R++G+V T+  RR +  +I +   ++R+  ER A+N PIQG+AADI + AM+ ++++
Sbjct: 769 MQARRDGFVTTLLERRRYLPDIKASNFNLRSFAERTAMNTPIQGTAADIIKLAMVRMNET 828

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L +  L ++MLLQ+HDELVFEVPEEE+    +++  +M  A    + L VPLK ++    
Sbjct: 829 LRERGLKSRMLLQVHDELVFEVPEEELELMKELVPSTMAGA----LTLDVPLKADVNYGV 884

Query: 971 NWQE 974
           NW E
Sbjct: 885 NWYE 888



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 107/285 (37%), Positives = 162/285 (56%), Gaps = 12/285 (4%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+DG+S   RAFYA P L+    GL  NA+ GF  ML KLL++ +     +H  V FD  
Sbjct: 6   LIDGNSIANRAFYAMPPLTNSA-GLHTNAVFGFTTMLLKLLEDEK----PTHVLVAFDAG 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
            V FR+E Y +YK  R K P  L  Q P+++   +AFGI   E+ G+EADDII T T +A
Sbjct: 61  KVVFRHEGYTEYKGGRAKTPSELSEQFPVMKDLLKAFGISQFELSGYEADDIIGTLTRLA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVCLQ 183
           +++     +++ DKD++QL S    +  T K    ++EH     + +K+G+ P +++ L+
Sbjct: 121 DEQKVETLVVTGDKDMLQLASDNVTIAITRKGIS-EVEHFSPAAIDEKYGLKPMQIIDLK 179

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD+ DNIPGIPG+G KTA  +L E+G +E +L N   +K  K +E +  + + A +S
Sbjct: 180 GLMGDASDNIPGIPGVGEKTALKMLHEFGTVEEVLANTESLK-GKMKEKVETHKDDAIMS 238

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +KL  +  +VP+    E +  E      L    + LEF  LI R+
Sbjct: 239 KKLATIFREVPLEHSAEDIRYEGYQPATLADAFRKLEFKSLIERL 283


>gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141]
          Length = 877

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLVVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGVKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
 gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
          Length = 870

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 364 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 422

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 423 KGVKKAIP----EREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLA 478

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 479 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 538

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 539 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 597

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 598 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 657

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 658 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 717

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 718 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 777

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 778 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 837

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 838 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 868



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/286 (38%), Positives = 153/286 (53%), Gaps = 17/286 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH  
Sbjct: 1   MIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHIL 53

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII 
Sbjct: 54  VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIG 113

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P +
Sbjct: 114 TLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQ 173

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++   E
Sbjct: 174 FIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKE 233

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 234 QAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 279


>gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570]
          Length = 877

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 889

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 210/529 (39%), Positives = 310/529 (58%), Gaps = 19/529 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
           LK F E    LK+ ++ K  K++L+R  ++++    D  L  Y+L S   +++I++IA  
Sbjct: 371 LKNFLEKTP-LKV-YDFKKAKVLLNRLDLNLQAPAFDSRLAKYLL-STVENNEISTIASL 427

Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             Q ++        K  K +IP       +  EH      V+++   +L  KL     L 
Sbjct: 428 YGQTYMVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLIEKLSEHGQLD 483

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+ E+FN++SPK
Sbjct: 484 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELADEEFNINSPK 543

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY  S
Sbjct: 544 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVS 603

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746
           L + I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+
Sbjct: 604 LQDWILD-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805
           S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +N
Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F ++YGIS F LA  L I R +A  YI  YF RFPGI  Y+E+     R  GYVET+F R
Sbjct: 723 FGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKR 782

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+H
Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V EVP+ E+     ++  +ME+A    I L VPL  +      W E
Sbjct: 843 DEIVLEVPKSELAAVKVLVKQTMEEA----IQLSVPLIADENEGATWYE 887



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/285 (39%), Positives = 151/285 (52%), Gaps = 11/285 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        SH  V
Sbjct: 18  LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 73

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 74  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELPQYEADDIIGT 133

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AEK+ F VTI+S DKDL+QL    T +  + K     E     ++++K G+ P + 
Sbjct: 134 LGRLAEKDSFDVTIVSGDKDLIQLTDERTVVEISKKGVAEFEAFTPAYLMEKMGLTPAQF 193

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 253

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           A LS+ L  + T  PI I L+ L+    +   L  F   + F +L
Sbjct: 254 AFLSKTLATIETQAPIEIGLDDLVYSGPDVENLGKFYDEMGFKQL 298


>gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
 gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
          Length = 789

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 183/417 (43%), Positives = 265/417 (63%), Gaps = 11/417 (2%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           KL   KL+ +Y+ ++ P+ID++ +ME  GI+I++  + +++ E+ +NL  +E  I+D   
Sbjct: 376 KLKENKLVKLYKEIELPVIDILFEMEKHGIKINEKKVYEINDELEENLKEIERKIFDYCK 435

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI---NCGDNPIIKNILEWR 675
           E+FNL+SPKQL  ILF KL      KTKTG + T+ + L+++   N G   +I  IL++R
Sbjct: 436 EEFNLNSPKQLSFILFEKLGLEPAKKTKTG-FSTSEEALQELKFKNPGHVELIDYILKYR 494

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           +LSK+KSTY  +L N++    +R+HT +    T TGR++S+ PNLQNIP+ +  G++IR 
Sbjct: 495 ELSKLKSTYTLNLLNYM-ADDKRIHTTFKQTGTATGRISSINPNLQNIPVGSIYGKRIRE 553

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F +    + +S DYSQIELRILA ++    L   F N  DIH   A EIFGV  E+V P
Sbjct: 554 CFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFINDEDIHNKTAKEIFGV--EEVDP 611

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + RR AK +NF IIYG+SP+ LA    I +SEA  +I+RYF+ +PG+  YI+      ++
Sbjct: 612 KHRRLAKAVNFGIIYGLSPYGLARDTGITQSEAKVFIERYFNLYPGVKNYIDSIIKEAKE 671

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GY ETI GR+    +INS    ++   ER AINAPIQGSAADI + AMI+++K L+  +
Sbjct: 672 KGYTETILGRKRFIKDINSANRMLKQRAERIAINAPIQGSAADIIKLAMINIYKYLQKTQ 731

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +  KM+LQIHDEL+FEV E+ +    Q   + ME      I L+VPLKVN     NW
Sbjct: 732 IDVKMILQIHDELLFEVKEDIVEDFVQEFKNRMENV----IKLKVPLKVNYSTGKNW 784



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 7/219 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DG S  YR FY TPLL+    G P + +  F N++  L +    E I     V+FD
Sbjct: 2   IVIIDGHSVSYRIFYKTPLLNNSK-GEPTSVLHSFINLIISLKEKLNPEKIY----VVFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T R++I+ +YKA R K PE L+PQ+  ++     FG+        EADDII T   
Sbjct: 57  SKGETERHKIHKEYKAQREKTPENLIPQIENLKKILPYFGVYVAYQDATEADDIIFTLIQ 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +KE   + +I+ DKDL QLV+    +YD   EE I+ + V +K+G+ PE++    AL+
Sbjct: 117 KYKKEN--IYLITKDKDLFQLVNDRVLIYDYQNEEIINRDKVKEKFGVYPEQIKDYLALS 174

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           GD  DNIPG+ G+G KTA  L+ E+G+L+N+  N   I+
Sbjct: 175 GDQSDNIPGVKGVGVKTAEKLINEFGSLDNVYQNIESIQ 213


>gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464]
          Length = 893

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 280/992 (28%), Positives = 472/992 (47%), Gaps = 128/992 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKDLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E+A LS++L  L+        ++      C  P                         
Sbjct: 237 DKESAFLSKELATLQRGC-----IKEFDFLSCAFP------------------------- 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                        +EN  + I+ E+     I     S+L D       E +P  L L+  
Sbjct: 267 -------------SENPLLKIKDELKEYGFI-----STLRDL------ENSPTPLILDNT 302

Query: 356 QKLSQYPINNDSYTK-----IVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAI 409
             L   P+ +++  K     + NT  +  +++KL+   +  F +++ D       K +A+
Sbjct: 303 PLLENAPLLDNAPKKSCMIVLENTAPLSAFLEKLKNSNARIFARLVLDK----EKKVLAL 358

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHN 468
           A    DQ      + E +F   S+   Q++                FF+  +H   IGH+
Sbjct: 359 AFLYEDQGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHD 401

Query: 469 IK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKS 523
           +K     +  +Y +S+     +D  +++++ +  +   D   + +++L       E +K 
Sbjct: 402 LKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--EVVREYLKEELIPHETIKD 459

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            K+   ++K+    ++ +A++      +L        + E LL +   ++ P++ V+  M
Sbjct: 460 FKTKSKVEKLEQLDMELNALK------RLCEYFEKGGLEEGLLALARGVETPLMKVLMGM 513

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G +ID    K++  E    L  LE  I DL G  FNL+SPKQL +IL+ KL+ P   
Sbjct: 514 EFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQN- 572

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           K+++   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +
Sbjct: 573 KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 626

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762
               T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH +
Sbjct: 627 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFS 686

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L 
Sbjct: 687 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 743

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP +EA  YI+ YF RFP I +Y+++ K  + +     T+ GR   +D        I+  
Sbjct: 744 IPLNEAKSYIEAYFKRFPSIKDYLKRMKEEILKTSKAFTLLGRYRVFD-FAGVNDHIKGN 802

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q
Sbjct: 803 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALKLQQ 861

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   +     P   LRVPL+ +  ++  W E
Sbjct: 862 EIQRILNDEVYP---LRVPLETSAFMAKRWNE 890


>gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS]
 gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS]
          Length = 880

 Score =  334 bits (856), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 198/517 (38%), Positives = 310/517 (59%), Gaps = 21/517 (4%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP- 640
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 641 -SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTG + T    LE++     PI+  IL++RQ++K++STY   L ++I     ++
Sbjct: 549 EMTKKTKTG-YSTAVNVLERL-APIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKI 605

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRIL 758
           HT Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+L
Sbjct: 606 HTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVL 665

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRL 817
           AHI+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L
Sbjct: 666 AHISGDEHLIAAFNEGADIHTSTAMRVFGIDRAADVTANDRRNAKAVNFGIVYGISDFGL 725

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           +  L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   
Sbjct: 726 SNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNF 785

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           ++R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+
Sbjct: 786 NVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDEL 845

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           T   +++  +ME A    ++L VPL V+    ++W E
Sbjct: 846 TAIKKLVKDTMEAA----VDLAVPLCVDESTGHSWYE 878



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKTSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6]
 gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6]
          Length = 885

 Score =  334 bits (856), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 183/491 (37%), Positives = 291/491 (59%), Gaps = 12/491 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           D+ + +Y+LD   S +   ++A ++    L  + +E+L ++K  +   ++ +     +A 
Sbjct: 401 DVAIAAYLLDPLASDYPFDTLAAQYVKDVLILSAEEVLGTKKE-VSWFEVPEETAAMYAG 459

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           E +   L     L  KL  + +  +Y+ ++ P++  +  ME  GI++  D L+     + 
Sbjct: 460 EIAYTALSCGPGLVEKLEAQGMRKLYDEVEMPLVYTLCHMEEAGIRVLPDELETYGENLK 519

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + +  LE +IY+ +GEKFN++SPKQLG ILF K++ P G KTKTG + T A  LE++   
Sbjct: 520 EGIARLETSIYEAAGEKFNINSPKQLGVILFEKMQLPGGKKTKTG-YSTAADVLEKLAV- 577

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D P + +ILE+RQL+K+KSTYAD L   I     R+HT +    T TGR++S EPNLQNI
Sbjct: 578 DVPFVADILEYRQLTKLKSTYADGLAACIAA-DGRIHTTFKQTITATGRISSTEPNLQNI 636

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P + +LG++IR+ F+       + ADYSQIELR+LA ++    L + + ++ DIH + A+
Sbjct: 637 PTRIELGRQIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAITAS 696

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           ++F V + +V+P MRR+AK +NF I+YGIS   L+  L I R EA +YI  Y+  +PGI 
Sbjct: 697 QVFHVPLSEVTPLMRRNAKAVNFGIVYGISAHGLSEDLNISRKEAQEYIDSYYEAYPGIR 756

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y+E      ++  Y ET +GRR    E++S     R   ER A NAPIQG+AADI + A
Sbjct: 757 GYLESLVETAKKKEYSETYYGRRRPMPELSSGNFMQRQFGERVAKNAPIQGTAADIIKIA 816

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M  V + L++  L +++LLQ+HDEL+ E  E+E+    +I+   M  A     +L V ++
Sbjct: 817 MNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELERVREILREEMIGAT----DLAVSME 872

Query: 964 VNIKVSNNWQE 974
           +++    NW E
Sbjct: 873 IDMHDGKNWYE 883



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 164/288 (56%), Gaps = 13/288 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DG S + RAFY  P L+   +G    A+ GF N+L+++L   + E    +  V FD
Sbjct: 5   ILIIDGHSMLNRAFYGLPDLTNA-EGRHTGAVLGFLNILFRVLDEEKPE----YLVVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++++ +YK  R  +PE L  Q+PL++    A G+  I  +G+EADD+I T   
Sbjct: 60  LSAPTFRHKMFAEYKGTRHPMPEELREQVPLIKEVLTAMGVTIITKEGYEADDLIGTVAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
             EKEG  VTI+S D+DL+QL +       P T    T   +    + VI+++ + P ++
Sbjct: 120 RGEKEGMDVTILSGDRDLLQLATDKILVRIPKTKGGQTTVLD-YHTKDVIEEYQVTPAQI 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD+ DNIPG+PG+G KTA  +L +YG +EN   +   +K KK  E++ ++ + 
Sbjct: 179 IELKALMGDTADNIPGLPGVGPKTATKILLDYGTIENAHDHVEELKPKKAMESMRDHWDL 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           A LS++L  + TD P+ + L    L D   P      + L F KL++R
Sbjct: 239 AVLSKQLATINTDSPVELELSEARLGDLYTPEAYEIFRQLGFKKLLSR 286


>gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
 gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
          Length = 912

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 197/510 (38%), Positives = 306/510 (60%), Gaps = 14/510 (2%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKE--ILKSRK 525
           I Y+   L   GI+ +     M+++Y L S ++  D I  I +    Y++ E    K+  
Sbjct: 411 ISYNFKALLNLGINFKSMYMDMMIAYHLISSQTKIDPIIPIVE----YSKLEPKDFKTAF 466

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             I ++ I+     ++    S  IL ++  L   L  E L  +  + + P+I V+S ME 
Sbjct: 467 GKINVELITAQDFSKYLSAISIGILAIYDELNYLLKKEDLYKILMKNEMPLIPVLSLMER 526

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KT
Sbjct: 527 KGIEIDVQYFKNYSLELDKELLKIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 586

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T    LE +      I + +L++R+L+K+K+TY D+LP  +++ + R+HT ++ 
Sbjct: 587 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQ 644

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K  
Sbjct: 645 IGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDE 704

Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + +    D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP
Sbjct: 705 NLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 764

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             +A++YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  E
Sbjct: 765 VKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 824

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N  IQG+AA++ ++ M+ V+  L+D K    +LLQ+HDEL+FEV E  +   S+I+
Sbjct: 825 RMAVNTVIQGTAAEVLKKVMVKVYDVLKD-KEEIALLLQVHDELIFEVEESSVEKYSEIL 883

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M+     +    V L +NI +  NW E
Sbjct: 884 ADIMKNTVQLE---DVKLNININIGKNWAE 910



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 18/293 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + + +A+ F V     
Sbjct: 6   LLDVSAIMYRAYFANINFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +   R EIY DYK+NR   PE L+ Q+P +     AF I   +I G+EADD++ +     
Sbjct: 61  SSLKRTEIYSDYKSNRQSAPEDLITQIPRIEEVLDAFNINRYKIDGYEADDVLGSLAKKI 120

Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
            K+   V I++ DKDL QLV        L    + EK  I    + VIK  G+ PEK+  
Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSDDVIKYLGVVPEKIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +N++  
Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIKNLVNE 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            + A +SR+L  + TD+ IT+  E  +    +  +L S  K LEF   I ++ 
Sbjct: 241 KDIAFMSRELAKIFTDLDITVE-EKGLQYGMDREKLYSLCKILEFKMFIKKLG 292


>gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974]
 gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2]
          Length = 877

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL EYG+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEYGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
 gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
          Length = 945

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 196/522 (37%), Positives = 313/522 (59%), Gaps = 21/522 (4%)

Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KE 519
           KIGH++K+D  VL   GI ++G F D +L   ++  G   H +  +A+  L Y+    K+
Sbjct: 432 KIGHHLKFDLEVLRANGIHVKGPFFDTLLAHALIAPGMK-HGMDVLAENLLQYSTIKLKD 490

Query: 520 ILK--SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           I    ++K  +    +    + +++ E++++ LQL  +L+ ++    +  ++  ++ P++
Sbjct: 491 IAAPGAKKRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKESGMEKLFRTVELPLL 550

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V++ ME +GI++  + L++ S ++   +  L E I + +G   NL+SPKQLGD LF +L
Sbjct: 551 PVLADMEFSGIRVLPESLEKASVKVGAIIDGLRERIEEAAGHPLNLNSPKQLGDFLFGEL 610

Query: 638 KF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           +      KTKTGQ+ T    L  +    +PII +IL +R+  K+KSTY D+LP +I  R 
Sbjct: 611 ELVKKPKKTKTGQFVTDEDTLSAL-APQHPIIADILAYRENMKLKSTYLDALPKYICPRD 669

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIE 754
            R+HT +    T TGRLAS +PNLQNIP++T+ G+ IR AF+ P ++K  ++SADYSQIE
Sbjct: 670 GRIHTQFHQMLTATGRLASQDPNLQNIPVRTEQGRLIRTAFV-PASEKYTMLSADYSQIE 728

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRI+A ++    +   F    DIH   AA ++G+  ++V   MRR AKT+NF IIYGIS 
Sbjct: 729 LRIMAALSGDPAMCGAFREGRDIHTETAARVYGIPRDQVDAVMRRAAKTVNFGIIYGISA 788

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F L+ +L  PR EAA  I+ YF +FP +  ++E   +   Q GY ET+ GRR    EINS
Sbjct: 789 FGLSQRLGCPRGEAATLIENYFTQFPVVKSFMEDLVHKAEQAGYAETLLGRRRMIPEINS 848

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
              +I++  ER AIN PIQG+AAD+ + AMI V K L+  +  ++++LQIHDEL+ ++  
Sbjct: 849 ANKTIKSAAERTAINTPIQGTAADMIKIAMIHVDKLLKGTR--SRLILQIHDELLVDLHR 906

Query: 935 EEITTASQIIVHSMEKACLPKINL--RVPLKVNIKVSNNWQE 974
           +E+      ++  +E+A +  + L   VP+ V  +   NW E
Sbjct: 907 DELD-----LIPKIEEAMVSALPLPNGVPILVEARTGGNWLE 943



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/287 (39%), Positives = 173/287 (60%), Gaps = 16/287 (5%)

Query: 7   LFLVDGSSFIYRA---FYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LF++DG +  YRA   F++ P+  R   G+  +A+ GF N L  +L++ R     +H A 
Sbjct: 9   LFILDGMALAYRAHFAFFSNPI--RNSKGVNTSAVYGFANTLLGILEHERP----THIAA 62

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A T R+++YP YKANR  +PE L  Q+PL+    +A  IP +  +G+EADD I T
Sbjct: 63  CFDTSAPTARHKLYPAYKANRESMPEELSDQMPLIFRLLEAMNIPILRYEGYEADDTIGT 122

Query: 124 YTYIAEK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PE 177
              IA+  EGF   ++S DKDL QL+S T  L+   K     E ID+  + ++WGI   +
Sbjct: 123 LARIADGTEGFQTYMVSQDKDLGQLISSTCFLWKPGKRGNDHEVIDLAKLKEQWGIERAD 182

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V + AL GDS DNIPG+PG+G KTA LL+ E+G++EN+L N  ++K  KR++ + E  
Sbjct: 183 QVVDILALMGDSSDNIPGLPGVGEKTAKLLIGEFGSVENLLSNTDKLK-GKRKQIVEENG 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
             A LS++L  +  +VP+T+ L  L+  + +   L + L+ LEF  +
Sbjct: 242 AMATLSKQLATIDRNVPLTVTLPELVKREPSPEELQALLQELEFRSM 288


>gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27]
 gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27]
          Length = 905

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 289/996 (29%), Positives = 464/996 (46%), Gaps = 124/996 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +EI GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
              +A LS++L  L         ++      C  P     LK  +  K    ++T  D +
Sbjct: 237 DKGSAFLSKELATLERGC-----IKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK-----INSEQTPQKL 350
            +   P++LD     +   A++          TS  +  SD   K     +     P   
Sbjct: 292 NSPT-PLILDNVPVLDSTPALDN-------APTSDNAPTSDNAPKKSRLIVLESAAPLSA 343

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
           FLE+L+       N   + ++V  KD                            K +A+A
Sbjct: 344 FLEKLKN-----PNARVFMRLVLDKD---------------------------KKILALA 371

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
               DQ      + E +F   S+   Q++        +IL         +H   IGH++K
Sbjct: 372 FLYEDQGYFLPLE-EALFSPFSLEFLQNAFS------QIL---------QHACIIGHDLK 415

Query: 471 -YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RK 525
                +  +Y +S+     +D  +++++ +  +   D              E+LK   ++
Sbjct: 416 PLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKE 461

Query: 526 SSIPIDKISD----SQVQEHAIENS--NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
             IP +KI D    S+V++  + +   N + +L        + E LL +   ++ P + V
Sbjct: 462 DLIPHEKIKDFKTKSKVEKLELLSVELNALKRLCEYFEKGGLEEDLLTLARDIETPFMKV 521

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +  ME  G +ID    K +  E    L  LE  I DL G  FNL+SPKQL ++L+ KL  
Sbjct: 522 LMGMEFQGFKIDAPYFKHLEQEFKNELHVLEHQILDLIGVDFNLNSPKQLSEVLYEKLGL 581

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P     K     T  ++L +I    +P I  ILE+R+L+K+ +TY   L   +  +  ++
Sbjct: 582 P-----KNKSHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKI 634

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRIL 758
           HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+L
Sbjct: 635 HTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 694

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH ++   L + F    DIH   +  +FG ++ K   + R  AK+INF ++YG+   +L+
Sbjct: 695 AHFSQDKDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYGMGSKKLS 751

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L IP SEA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D        
Sbjct: 752 ETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGVNDY 810

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           I+    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+   
Sbjct: 811 IKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAP 869

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              + I   +     P   LRVPL+ +  V+N W E
Sbjct: 870 KLQREIQRILNDEVYP---LRVPLETSAFVANRWNE 902


>gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
 gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
          Length = 870

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 364 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 422

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 423 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLA 478

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 479 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 538

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 539 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 597

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 598 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 657

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 658 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 717

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 718 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 777

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 778 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 837

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 838 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 868



 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/286 (38%), Positives = 153/286 (53%), Gaps = 17/286 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH  
Sbjct: 1   MIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHIL 53

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII 
Sbjct: 54  VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIG 113

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P +
Sbjct: 114 TLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQ 173

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L+AL GD  DNIPG+  +G KT   LL EYG+LE I  N   +K  K +EN++   E
Sbjct: 174 FIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEYGSLEGIYENIDGMKTSKMKENLINDKE 233

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 234 QAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 279


>gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO]
          Length = 838

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 210/536 (39%), Positives = 304/536 (56%), Gaps = 36/536 (6%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN  F       
Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELP 485

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T    LEQ+     PI+++IL +RQ++KI+STY + L   I + 
Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754
             +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIE
Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELV
Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELV 838



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 12/293 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M   ++Q  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ 
Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             E A LS+KL  + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291


>gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82]
 gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82]
          Length = 930

 Score =  333 bits (854), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 174/419 (41%), Positives = 266/419 (63%), Gaps = 7/419 (1%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           L   L  E + H++  ++ P++  ++ ME  GI   ++ L +   +++  +  LE+ IY+
Sbjct: 517 LETDLKEEGMDHLFTEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYE 576

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
            +GE+FN++SPKQLG ILF KL  P G KTKTG + T A  L+++   + PI+ +ILE+R
Sbjct: 577 EAGEEFNINSPKQLGVILFEKLSMPYGKKTKTG-YSTAADVLDRL-APEYPIVSDILEYR 634

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           QL+K+KSTYAD L N+I K   R+HT ++   T TGRL+S EPNLQNIP++ +LG+ IR+
Sbjct: 635 QLTKLKSTYADGLVNYIAK-DGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRK 693

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF+     + + ADYSQIELR+LAH++    L + +  + DIHR+ A+++F +  ++V+ 
Sbjct: 694 AFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTD 753

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR+AK +NF I+YGIS F L+  L I + EAA+YI+RYF  +P I  +++      ++
Sbjct: 754 LQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE 813

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYV T+FGRR    E++S     R+  ER A+N+PIQG+AADI + AMI VH  L    
Sbjct: 814 KGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKEN 873

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L ++++L +HDEL+ E   EE     +I+   M  A     +L V L+++  V  NW E
Sbjct: 874 LKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAA----DLAVTLEIDAHVGKNWYE 928



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 169/301 (56%), Gaps = 32/301 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RAF+  P L+   +GL  NA+ GF N+++K+L+  + +    +  V FD
Sbjct: 9   LVLIDGHSILNRAFFGIPDLTNS-EGLHTNAVYGFLNIMFKILEEEQPD----YLTVAFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++ +YK  R  + + L  Q+PL++   +A G+  IE  G+EADD++ T   
Sbjct: 64  VSEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEADDLLGTIAK 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            +E++G  V+++S D+DL+QL +       P T    T + E  +   V +K+ + P + 
Sbjct: 124 QSEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGT-EIEDYNAAEVQEKYQVTPIEF 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PGIG KTA  ++ +YG++EN   +   +K  +  +N+ EY + 
Sbjct: 183 IDVKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKNLKEYYDL 242

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL--ISFL---------KALEFTKLINRV 288
           A++S+ L         TI +   I  D +G +L  IS L         K LEF  L+NR 
Sbjct: 243 AQMSKTLA--------TIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNRF 294

Query: 289 A 289
           A
Sbjct: 295 A 295


>gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813]
          Length = 880

 Score =  333 bits (854), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 210/563 (37%), Positives = 323/563 (57%), Gaps = 44/563 (7%)

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +TI+    V   Q++  K  L+K I +Y               + K  K++L+R+ I + 
Sbjct: 347 DTIYATSDVSLLQEALFKKALSKPIKTY---------------DFKRSKVLLNRFNIDLP 391

Query: 485 --GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIP-----IDKI 533
              F D  L  Y+L S    + +++IA+ +    L        K  K +IP     +D +
Sbjct: 392 EPAF-DTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLDHL 449

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  +V+      +N++ QL +  + +L+ E        +++P+ +V+++MEI GI++ ++
Sbjct: 450 A-KKVKVLVDSEANIMQQLKVNEQEELLFE--------MEQPLANVLAKMEIRGIKVKKN 500

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L +++ E  K + +L + IY+L+G++FN++SPKQLG +LF  L  P     KT    +T
Sbjct: 501 TLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYST 560

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A D+ +     +P++  ILE+RQ++K++STY   L ++I     ++HT Y    T TGRL
Sbjct: 561 AVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRL 619

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++ + G+ IR+AF+ S     L+S+DYSQIELR+LAHI+K   L   F+
Sbjct: 620 SSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFK 679

Query: 773 NSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L IPR  A  Y
Sbjct: 680 EGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQY 739

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R+PGI  Y+E      +  GYVET+F RR    +INS   +IR   ER AIN+P
Sbjct: 740 IDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSP 799

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI++ + L+     +KMLLQ+HDE+V EVP EEI    +++  +ME A
Sbjct: 800 IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIKELVTKTMESA 859

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               I+L VPL  +      W E
Sbjct: 860 ----ISLSVPLIADENAGETWYE 878



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 20/287 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +N L L+DGSS  +RAF+A  L +     + + GL  NAI GF  ML  +L   +  
Sbjct: 1   MTNKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E++ +
Sbjct: 57  --PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114

Query: 116 EADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T    AE  KE F +T++S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLAKQAEASKEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N   +KQ K 
Sbjct: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           +EN++   E A LS+ L  +    PITI LE ++    +GP+ I  L
Sbjct: 235 KENLINDKEQAFLSKTLATINIASPITIGLEDIL---YSGPQDIKAL 278


>gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
          Length = 880

 Score =  333 bits (854), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 194/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R ++  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 166/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  R  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVR-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K P+    Q   +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFSYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKTSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1]
          Length = 926

 Score =  333 bits (854), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 174/419 (41%), Positives = 266/419 (63%), Gaps = 7/419 (1%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           L   L  E + H++  ++ P++  ++ ME  GI   ++ L +   +++  +  LE+ IY+
Sbjct: 513 LETDLKEEGMDHLFTEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYE 572

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
            +GE+FN++SPKQLG ILF KL  P G KTKTG + T A  L+++   + PI+ +ILE+R
Sbjct: 573 EAGEEFNINSPKQLGVILFEKLSMPYGKKTKTG-YSTAADVLDRL-APEYPIVSDILEYR 630

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           QL+K+KSTYAD L N+I K   R+HT ++   T TGRL+S EPNLQNIP++ +LG+ IR+
Sbjct: 631 QLTKLKSTYADGLVNYIAK-DGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRK 689

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF+     + + ADYSQIELR+LAH++    L + +  + DIHR+ A+++F +  ++V+ 
Sbjct: 690 AFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTD 749

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR+AK +NF I+YGIS F L+  L I + EAA+YI+RYF  +P I  +++      ++
Sbjct: 750 LQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE 809

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYV T+FGRR    E++S     R+  ER A+N+PIQG+AADI + AMI VH  L    
Sbjct: 810 KGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKEN 869

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L ++++L +HDEL+ E   EE     +I+   M  A     +L V L+++  V  NW E
Sbjct: 870 LKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAA----DLAVTLEIDAHVGKNWYE 924



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 169/301 (56%), Gaps = 32/301 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RAF+  P L+   +GL  NA+ GF N+++K+L+  + +    +  V FD
Sbjct: 5   LVLIDGHSILNRAFFGIPDLTNS-EGLHTNAVYGFLNIMFKILEEEQPD----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++ +YK  R  + + L  Q+PL++   +A G+  IE  G+EADD++ T   
Sbjct: 60  VSEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEADDLLGTIAK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            +E++G  V+++S D+DL+QL +       P T    T + E  +   V +K+ + P + 
Sbjct: 120 QSEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGT-EIEDYNAAEVKEKYQVTPIEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PGIG KTA  ++ +YG++EN   +   +K  +  +N+ EY + 
Sbjct: 179 IDVKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKNLKEYYDL 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL--ISFL---------KALEFTKLINRV 288
           A++S+ L         TI +   I  D +G +L  IS L         K LEF  L+NR 
Sbjct: 239 AQMSKTLA--------TIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNRF 290

Query: 289 A 289
           A
Sbjct: 291 A 291


>gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4]
          Length = 930

 Score =  333 bits (854), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 174/419 (41%), Positives = 266/419 (63%), Gaps = 7/419 (1%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           L   L  E + H++  ++ P++  ++ ME  GI   ++ L +   +++  +  LE+ IY+
Sbjct: 517 LETDLKEEGMDHLFTEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYE 576

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
            +GE+FN++SPKQLG ILF KL  P G KTKTG + T A  L+++   + PI+ +ILE+R
Sbjct: 577 EAGEEFNINSPKQLGVILFEKLSMPYGKKTKTG-YSTAADVLDRL-APEYPIVSDILEYR 634

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           QL+K+KSTYAD L N+I K   R+HT ++   T TGRL+S EPNLQNIP++ +LG+ IR+
Sbjct: 635 QLTKLKSTYADGLVNYIAK-DGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRK 693

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF+     + + ADYSQIELR+LAH++    L + +  + DIHR+ A+++F +  ++V+ 
Sbjct: 694 AFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTD 753

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR+AK +NF I+YGIS F L+  L I + EAA+YI+RYF  +P I  +++      ++
Sbjct: 754 LQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE 813

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYV T+FGRR    E++S     R+  ER A+N+PIQG+AADI + AMI VH  L    
Sbjct: 814 KGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKEN 873

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L ++++L +HDEL+ E   EE     +I+   M  A     +L V L+++  V  NW E
Sbjct: 874 LKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAA----DLAVTLEIDAHVGKNWYE 928



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 169/301 (56%), Gaps = 32/301 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RAF+  P L+   +GL  NA+ GF N+++K+L+  + +    +  V FD
Sbjct: 9   LVLIDGHSILNRAFFGIPDLTNS-EGLHTNAVYGFLNIMFKILEEEQPD----YLTVAFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++ +YK  R  + + L  Q+PL++   +A G+  IE  G+EADD++ T   
Sbjct: 64  VSEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEADDLLGTIAK 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            +E++G  V+++S D+DL+QL +       P T    T + E  +   V +K+ + P + 
Sbjct: 124 QSEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGT-EIEDYNAAEVKEKYQVTPIEF 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PGIG KTA  ++ +YG++EN   +   +K  +  +N+ EY + 
Sbjct: 183 IDVKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKNLKEYYDL 242

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL--ISFL---------KALEFTKLINRV 288
           A++S+ L         TI +   I  D +G +L  IS L         K LEF  L+NR 
Sbjct: 243 AQMSKTLA--------TIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNRF 294

Query: 289 A 289
           A
Sbjct: 295 A 295


>gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232]
 gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232]
          Length = 880

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 194/515 (37%), Positives = 305/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+ +DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLGSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  R  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVR-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
 gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
          Length = 878

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 177/405 (43%), Positives = 259/405 (63%), Gaps = 7/405 (1%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+ +V+++MEI GI+++ + LK + +E    +  L + IY+L+G++FN++SPKQLG 
Sbjct: 477 MELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGT 536

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF ++  P     KT    +TA D+ +      P++  ILE+RQ++K++STY   L + 
Sbjct: 537 ILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDA 596

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750
           I +   ++HT Y    T TGRL+S +PNLQNIP++ + G+ IR+AF+ S     L+++DY
Sbjct: 597 ILE-DGKIHTRYVQDLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDY 655

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSII 809
           SQIELR+LAHI++   L + F+   DIH   A  +FG+   E V+P  RR+AK +NF ++
Sbjct: 656 SQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVV 715

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS F L+  L I R EA  YI  YF RFPGI  Y+E      R  GYVETI+ RR   
Sbjct: 716 YGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRREL 775

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +INS   ++RN  ER AIN+PIQGSAADI + AMI++ K+L +  LAT+MLLQ+HDE+V
Sbjct: 776 PDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EVP  E+ T   ++  +ME A    I+L VPL  +    + W E
Sbjct: 836 LEVPVAELETVKAMVKETMESA----ISLSVPLIADENEGSTWYE 876



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 166/316 (52%), Gaps = 24/316 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKES 56
           K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  +++      
Sbjct: 2   KKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPTGLHTNAIYGFNLMLDHMMKRIE--- 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A G+   E+  +E
Sbjct: 56  -PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELAQYE 114

Query: 117 ADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170
           ADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++
Sbjct: 115 ADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLME 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+L+ I  N   +K  K +
Sbjct: 175 KMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSLDGIYENIDSMKASKMK 234

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           EN++   E A LSR L  + T  PI I L+ ++ +      L  F   + F +L  ++ T
Sbjct: 235 ENLIADKEKAFLSRTLATIDTQAPIEIGLDDIVYQGPKVDELGQFYDDMGFKQLRAQLGT 294

Query: 291 TYDCDAANIEPVVLDI 306
           T     ++ E  VLD 
Sbjct: 295 T-----SSQEEAVLDF 305


>gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701]
 gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701]
          Length = 997

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/550 (36%), Positives = 310/550 (56%), Gaps = 32/550 (5%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506
           ++L+ L  + E+    K   N KYD+L+L R+G+S+ G   D +L  Y+ D+  + H + 
Sbjct: 455 QVLTALAPWLESARHPKTLQNAKYDRLILLRHGLSLEGVVMDTLLADYLRDA-NAKHGLE 513

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEK 564
            +A++   +T     +          +  +    +   + +V  +L  LLR +L  + E 
Sbjct: 514 VLAERNFGFTPTSFSELVAKGETFAAVPIAAAARYCAMDVHVTWRLTPLLRGQLQQLGEA 573

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  + ++++ P+  V+++ME TGI+ID+  L  +S E++  L SLE    + +G +FNL+
Sbjct: 574 LPKLLDQVELPLEPVLARMEATGIRIDKPYLATLSEELAGTLASLEAGAREAAGVEFNLA 633

Query: 625 SPKQLGDILFTKLKFP--SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           SPKQLG++LF  L        KTKTG W T A  LE++  GD+P++  +LE R LSK+KS
Sbjct: 634 SPKQLGELLFETLGLERKKSRKTKTG-WSTDAAVLEKL-AGDHPVVPLVLEHRTLSKLKS 691

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+    
Sbjct: 692 TYVDALPALVEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEG 751

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            +LISADYSQIELRIL H++    L + + N  D+H + A  +  ++ ++V+   RR  K
Sbjct: 752 WQLISADYSQIELRILTHLSGEEVLVEAYANGDDVHALTARLL--LDKDEVTADERRLGK 809

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           TINF +IYG+   R A +  + +S+A +++ +Y  R+P +  ++E  +      GYVETI
Sbjct: 810 TINFGVIYGMGAQRFARETGVSQSQAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETI 869

Query: 863 FGRRIHY---------------DEIN---SPKSSIRNINERAAINAPIQGSAADITRRAM 904
            GRR  +               +EI    + ++ +     RAA NAPIQGS+ADI + AM
Sbjct: 870 LGRRRPFAFDPGGLGRLRGKPPEEIELEVARRAGMEAQQLRAAANAPIQGSSADIIKLAM 929

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           + + + L    L  ++LLQ+HDELV E   E +      +   ME A    + L VPL V
Sbjct: 930 VQLDQQLRASGLPARLLLQVHDELVLEAAPEALEPVLAAVKQVMENA----VRLLVPLLV 985

Query: 965 NIKVSNNWQE 974
           +  V  NW E
Sbjct: 986 DTGVGPNWME 995



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 150/308 (48%), Gaps = 27/308 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M +   L LVDG S  +R+FYA        LS K +G+P +   GF   L + ++    +
Sbjct: 1   MAEAPMLLLVDGHSLAFRSFYAFAKGGEGGLSTK-EGIPTSVTYGFLKALLENVKGLTPQ 59

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQG 114
            +     + FD    TFR+E    YKA+R + PE     L  L  +   A  +P     G
Sbjct: 60  GVV----IAFDTAEPTFRHEADASYKAHRDEAPEQFFADLANLQEILAGAMDLPLCMAPG 115

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKID 164
           +EADD++ T    A   G+ V I+S D+DL QLV  T     LY        +     I 
Sbjct: 116 YEADDVLGTLANRAAGAGWRVRILSGDRDLFQLVDDTRDIAVLYMGGGPYAKSSGPVTIR 175

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            E VI K G+ PE++V L+ALTGD+ DNIPG+ G+G KTA  LL  + NL+ I   A+  
Sbjct: 176 REGVIAKLGVTPEEVVDLKALTGDASDNIPGVKGVGPKTAISLLNTHRNLDGIY--AALD 233

Query: 225 KQKKRRENILEY-AETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLISFLKALEFT 282
           +QK   +  LE   E A  SR L  +  D+P  +P E  L L   +   L   L+ LE  
Sbjct: 234 QQKGALKKKLETDRENAYRSRMLAEILVDIP--LPSEPRLTLGAVDAAALAQRLEELELF 291

Query: 283 KLINRVAT 290
            L  ++A 
Sbjct: 292 SLARQLAA 299


>gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 881

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/411 (43%), Positives = 269/411 (65%), Gaps = 11/411 (2%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL-SLEENIYDLSGEKFNLSSP 626
           +Y +++ P+ +V+++MEI GI++++  L ++ AE ++N++ +L + IYDL+GE+FN++SP
Sbjct: 476 LYYKIELPLANVLAKMEIAGIKVNKLTLMEM-AEQNRNIIDALTQEIYDLAGEEFNINSP 534

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF K++ P     KT    +TA D+ +      PI+  IL++RQ++K++STY  
Sbjct: 535 KQLGSILFEKMQLPLTMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYLI 594

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I     ++HT Y    T TGRL+S +PNLQNIPI+ + G+ IR+AF +P +    
Sbjct: 595 GLQDYI-MEDGKIHTRYVQDLTQTGRLSSTDPNLQNIPIRMEQGRLIRKAF-TPSSDDWL 652

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKT 803
           L+S+DYSQIELR+LAHI+    L   F ++ DIH   A  +FG+  E  V+   RR+AK 
Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIAAFNDNADIHTATAMRVFGIEKEADVTANDRRNAKA 712

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS F L+  L I R +A DYI  YF R+PGI +Y++      +  GYVET+F
Sbjct: 713 VNFGIVYGISDFGLSNNLGISRQKARDYIDTYFERYPGIKKYMDAVVREAKDKGYVETLF 772

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR    +INS   ++R+  ER AIN+PIQGSAADI + AMI++ K+L D +   KMLLQ
Sbjct: 773 KRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALVDGEFKAKMLLQ 832

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDE+V EVP++E+    Q++   ME A    ++L VPL+ +     +W E
Sbjct: 833 VHDEIVLEVPKQELAAVRQLVKEIMEDA----VDLAVPLRADENSGQSWYE 879



 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/295 (39%), Positives = 163/295 (55%), Gaps = 17/295 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     R   GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFRNQSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR ++Y DYKA R K P+    Q P +R    A G+P  ++  +
Sbjct: 57  --PTHILVAFDAGKTTFRTDMYADYKAGRAKTPDEFREQFPYIREMLTALGVPFYDLANY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDANTIVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N    K  K 
Sbjct: 175 EKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEGIYANLDHFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           +EN++   E A LS+ L  + TD PITI LE L+ +  N   L +F   + F +L
Sbjct: 235 KENLMNDKEQAFLSKTLATINTDAPITIGLEDLLYQGPNLDALATFYDEMGFVQL 289


>gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
 gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
          Length = 912

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 197/510 (38%), Positives = 305/510 (59%), Gaps = 14/510 (2%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKE--ILKSRK 525
           I Y+   L   GI+ +     M+++Y L S ++  D I  I +    Y++ E    K+  
Sbjct: 411 ISYNFKALLNLGINFKSMYMDMMIAYHLISSQTKIDPIIPIVE----YSKLEPKDFKTAF 466

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             I ++ I+     ++    S  IL ++  L   L  E L  +    + P+I V+S ME 
Sbjct: 467 GKINVELITAQDFSKYLSAISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMER 526

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KT
Sbjct: 527 KGIEIDVQYFKNYSLELDKELLKIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 586

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T    LE +      I + +L++R+L+K+K+TY D+LP  +++ + R+HT ++ 
Sbjct: 587 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQ 644

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K  
Sbjct: 645 IGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDE 704

Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + +    D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP
Sbjct: 705 NLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 764

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             +A++YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  E
Sbjct: 765 VKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 824

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N  IQG+AA++ ++ M+ V+  L+D K    +LLQ+HDEL+FEV E  +   S+I+
Sbjct: 825 RMAVNTVIQGTAAEVLKKVMVKVYDVLKD-KEEIALLLQVHDELIFEVEESSVEKYSEIL 883

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M+     +    V L +NI +  NW E
Sbjct: 884 ADIMKNTVQLE---DVKLNININIGKNWAE 910



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 18/293 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + + +A+ F V     
Sbjct: 6   LLDVSAIMYRAYFANINFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +   R EIY DYK+NR   PE L+ Q+P +     AF I   +I G+EADD++ +     
Sbjct: 61  SSLKRTEIYSDYKSNRQSAPEDLITQIPRIEEVLDAFNINRYKIDGYEADDVLGSLAKKI 120

Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
            K+   V I++ DKDL QLV        L    + EK  I    + VIK  G+ PEK+  
Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSDDVIKYLGVVPEKIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +N++  
Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIKNLVNE 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            + A +SR+L  + TD+ IT+  E  +    +  +L S  K LEF   I ++ 
Sbjct: 241 KDIAFMSRELAKIFTDLDITVE-EKGLQYGMDREKLYSLCKILEFKMFIKKLG 292


>gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
 gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
          Length = 974

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 195/531 (36%), Positives = 307/531 (57%), Gaps = 59/531 (11%)

Query: 464 KIGHNIKYDKLVLHRYGISMR---GFEDIMLMSYVLDSGRSSHDIA-------------- 506
           K+  ++K     L  +GI +    G++D+ L +Y+L+      +++              
Sbjct: 477 KVAFDLKSMAFALDAHGIGLTSECGWQDVKLAAYLLNPQDGEVELSDVFARELGQELPTF 536

Query: 507 --SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
              + +KWL+YT         S +P                      L+  L   + +++
Sbjct: 537 DDGVREKWLAYT--------ASQLP---------------------PLFESLAYTIRMQE 567

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +  +Y+ ++ P+  V+++MEITG  ++++ L     E+++ +  + + IYDL+G  FNL+
Sbjct: 568 MERLYQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERITRITQEIYDLAGTSFNLN 627

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF KL  P+  KTKTG + T+A  LE++    + I++ IL++R L+K++STY
Sbjct: 628 SPKQLGEILFDKLGLPALKKTKTG-YSTSADVLEKL-APMHEIVQKILDYRLLAKLQSTY 685

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            + L   I K T RVHT +    T TGRL+S EPNLQNIPI+ + G+++RR F   PT K
Sbjct: 686 VEGLLKVIRKETGRVHTRFHQTLTATGRLSSSEPNLQNIPIRLEEGRRLRRVF--EPTYK 743

Query: 745 ---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              + +ADYSQIELRILAH++    L   F   +DIH   AA++F V  E+V+  MRR A
Sbjct: 744 DWVIFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQA 803

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF I+YGIS F LA  L IP+ EA  +I+ YF +FPG+  Y+++     R+ GYV T
Sbjct: 804 KAVNFGIVYGISDFGLAQNLNIPQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTT 863

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +  RR +  +I+S    +R+  ER A+N PIQGSAAD+ + AM+ + +++ D ++  +ML
Sbjct: 864 LMNRRRYLPDIHSRNYQLRSFAERTAMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARML 923

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+FE P +E+     ++  +ME A    + L VPLKV+      W
Sbjct: 924 LQVHDELIFECPNDELAALEVLVRDNMENA----MTLSVPLKVDTAYGPTW 970



 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 173/302 (57%), Gaps = 10/302 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S +YRAF+A P L+ + DG P NA+ GF  M+ +L+ + +     +H AV 
Sbjct: 94  SKLVLIDGNSILYRAFFALPPLTAR-DGTPTNAVYGFTTMILRLMSDEKP----THLAVA 148

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R + P+ L+ Q PL R   +A  IP IEI  +EADD+I T 
Sbjct: 149 FDKSKTTFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMIEIDQYEADDVIGTL 208

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
              A + GF V ++S DKDL+QLV     +  T K     E  D + V +++ G+ P ++
Sbjct: 209 AKRAAEAGFDVRVVSGDKDLLQLVDDRIHVLLTRKGITEMEHFDEQAVARRYPGLKPAQV 268

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PG+G KTA  LL  +G +E +  +   ++ +K RE + ++ E 
Sbjct: 269 IDLKGLMGDPSDNIPGVPGVGEKTALKLLTSFGTVEGVYDHLDEVQGQKLRERLEQHRED 328

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D PI + LE L  E  +  R I++ + L+F  L+++++     D+   
Sbjct: 329 AFLSKRLATIACDAPIEVDLETLRYEGPDPARAIAWFRELDFRSLVDKISEEMSHDSTPT 388

Query: 300 EP 301
            P
Sbjct: 389 PP 390


>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
 gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
          Length = 878

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 177/405 (43%), Positives = 259/405 (63%), Gaps = 7/405 (1%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+ +V+++MEI GI+++ + LK + +E    +  L + IY+L+G++FN++SPKQLG 
Sbjct: 477 MELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGT 536

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF ++  P     KT    +TA D+ +      P++  ILE+RQ++K++STY   L + 
Sbjct: 537 ILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDA 596

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750
           I +   ++HT Y    T TGRL+S +PNLQNIP++ + G+ IR+AF+ S     L+++DY
Sbjct: 597 ILE-DGKIHTRYVQDLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDY 655

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSII 809
           SQIELR+LAHI++   L + F+   DIH   A  +FG+   E V+P  RR+AK +NF ++
Sbjct: 656 SQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVV 715

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS F L+  L I R EA  YI  YF RFPGI  Y+E      R  GYVETI+ RR   
Sbjct: 716 YGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRREL 775

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +INS   ++RN  ER AIN+PIQGSAADI + AMI++ K+L +  LAT+MLLQ+HDE+V
Sbjct: 776 PDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EVP  E+ T   ++  +ME A    I+L VPL  +    + W E
Sbjct: 836 LEVPVAELETVKAMVKETMESA----ISLSVPLIADENEGSTWYE 876



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 166/316 (52%), Gaps = 24/316 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKES 56
           K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  +++      
Sbjct: 2   KKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPTGLHTNAIYGFNLMLDHMMKRIE--- 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A G+   E+  +E
Sbjct: 56  -PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELAQYE 114

Query: 117 ADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170
           ADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++
Sbjct: 115 ADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLME 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+L+ I  N   +K  K +
Sbjct: 175 KMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSLDGIYENIDSMKASKMK 234

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           EN++   E A LSR L  + T  PI I L+ ++ +      L  F   + F +L  ++ T
Sbjct: 235 ENLIADKEKAFLSRTLATIDTQAPIEIGLDDIVYQGPKVDELGQFYDDMGFKQLRAQLGT 294

Query: 291 TYDCDAANIEPVVLDI 306
           T     ++ E  VLD 
Sbjct: 295 T-----SSQEEAVLDF 305


>gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 880

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 207/558 (37%), Positives = 318/558 (56%), Gaps = 34/558 (6%)

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +TI+   +V   Q++  K  L+K I +Y               + K  K++L+R+ I + 
Sbjct: 347 DTIYATSNVSLLQEALFKKALSKPIKTY---------------DFKRSKVLLNRFNIDLP 391

Query: 485 --GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQV 538
              F D  L  Y+L S    + +++IA+ +    L        K  K +IP      ++ 
Sbjct: 392 EPAF-DTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRF 445

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            EH  +   V++     +  +L   +   +   +++P+ +V+++MEI GI++ ++ L ++
Sbjct: 446 LEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEM 505

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           + E  K + +L + IY+L+G++FN++SPKQLG +LF  L  P     KT    +TA D+ 
Sbjct: 506 AIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVL 565

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +P++  ILE+RQ++K++STY   L ++I     ++HT Y    T TGRL+S +P
Sbjct: 566 ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDP 624

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+ IR+AF+ S     L+S+DYSQIELR+LAHI+K   L   F+   DI
Sbjct: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L IPR  A  YI  YF
Sbjct: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYF 744

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PGI  Y+E      +  GYVET+F RR    +INS   +IR   ER AIN+PIQGSA
Sbjct: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI++ + L+     +KMLLQ+HDE+V EVP EEI    +++  +ME A    I
Sbjct: 805 ADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESA----I 860

Query: 957 NLRVPLKVNIKVSNNWQE 974
           +L VPL  +      W E
Sbjct: 861 SLSVPLIADENAGETWYE 878



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/287 (39%), Positives = 155/287 (54%), Gaps = 20/287 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +N L L+DGSS  +RAF+A  L +     + + GL  NAI GF  ML  +L   +  
Sbjct: 1   MTNKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E++ +
Sbjct: 57  --PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114

Query: 116 EADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T    AE   E F +T++S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N   +KQ K 
Sbjct: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           +EN++   E A LS+ L  +    PITI LE ++    +GP+ I  L
Sbjct: 235 KENLINDKEQAFLSKTLATINIASPITIGLEDIL---YSGPQDIKAL 278


>gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1]
 gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1]
          Length = 880

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 207/558 (37%), Positives = 317/558 (56%), Gaps = 34/558 (6%)

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +TI+    V   Q++  K  L+K I +Y               + K  K++L+R+ I + 
Sbjct: 347 DTIYATSDVSLLQEALFKKALSKPIKTY---------------DFKRSKVLLNRFNIDLP 391

Query: 485 --GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQV 538
              F D  L  Y+L S    + +++IA+ +    L        K  K +IP      ++ 
Sbjct: 392 EPAF-DTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRF 445

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            EH  +   V++     +  +L   +   +   +++P+ +V+++MEI GI++ ++ L ++
Sbjct: 446 LEHLAKKVKVLVDSEANVMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEM 505

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           + E  K + +L + IY+L+G++FN++SPKQLG +LF  L  P     KT    +TA D+ 
Sbjct: 506 AIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVL 565

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +P++  ILE+RQ++K++STY   L ++I     ++HT Y    T TGRL+S +P
Sbjct: 566 ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDP 624

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+ IR+AF+ S     L+S+DYSQIELR+LAHI+K   L   F+   DI
Sbjct: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L IPR  A  YI  YF
Sbjct: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYF 744

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PGI  Y+E      +  GYVET+F RR    +INS   +IR   ER AIN+PIQGSA
Sbjct: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI++ + L+     +KMLLQ+HDE+V EVP EEI    +++  +ME A    I
Sbjct: 805 ADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIKELVTKTMESA----I 860

Query: 957 NLRVPLKVNIKVSNNWQE 974
           +L VPL  +      W E
Sbjct: 861 SLSVPLIADENAGETWYE 878



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 20/287 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +N L L+DGSS  +RAF+A  L +     + + GL  NAI GF  ML  +L   +  
Sbjct: 1   MTNKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E++ +
Sbjct: 57  --PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114

Query: 116 EADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T    AE  KE F +T++S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLAKQAEASKEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N   +KQ K 
Sbjct: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           +EN++   E A LS+ L  +    PITI LE ++    +GP+ I  L
Sbjct: 235 KENLINDKEQAFLSKTLATINIASPITIGLEDIL---YSGPQDIKAL 278


>gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
          Length = 878

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/405 (43%), Positives = 259/405 (63%), Gaps = 7/405 (1%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+ +V+++MEI GI+++ + LK + +E    +  L + IY+L+G++FN++SPKQLG 
Sbjct: 477 MELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGI 536

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF ++  P     KT    +TA D+ +      P++  ILE+RQ++K++STY   L + 
Sbjct: 537 ILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDA 596

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750
           I +   ++HT Y    T TGRL+S +PNLQNIP++ + G+ IR+AF+ S     L+++DY
Sbjct: 597 ILE-DGKIHTRYVQDLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDY 655

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSII 809
           SQIELR+LAHI++   L + F+   DIH   A  +FG+   E V+P  RR+AK +NF ++
Sbjct: 656 SQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVV 715

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS F L+  L I R EA  YI  YF RFPGI  Y+E      R  GYVETI+ RR   
Sbjct: 716 YGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRREL 775

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +INS   ++RN  ER AIN+PIQGSAADI + AMI++ K+L +  LAT+MLLQ+HDE+V
Sbjct: 776 PDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EVP  E+ T   ++  +ME A    I+L VPL V+      W E
Sbjct: 836 LEVPVAELETVKAMVKETMESA----ISLSVPLIVDENEGPTWYE 876



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 166/316 (52%), Gaps = 24/316 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKES 56
           K+N L L+DGSS  +RAF+A   L  + D      GL  NAI GF  ML  +++      
Sbjct: 2   KKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPTGLHTNAIYGFNLMLDHMMKRIE--- 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A G+   E+  +E
Sbjct: 56  -PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELDQYE 114

Query: 117 ADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170
           ADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++
Sbjct: 115 ADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLME 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+L+ I  N   +K  K +
Sbjct: 175 KMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSLDGIYENIDSMKASKMK 234

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           EN++   E A LSR L  + T  PI I L+ ++ +      L  F   + F +L  ++ T
Sbjct: 235 ENLIADKEKAFLSRTLATIDTQAPIEIGLDDIVYQGPKVDELGQFYDDMGFKQLRAQLGT 294

Query: 291 TYDCDAANIEPVVLDI 306
           T     ++ E  VLD 
Sbjct: 295 T-----SSQEEAVLDF 305


>gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008]
 gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008]
          Length = 873

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 184/486 (37%), Positives = 286/486 (58%), Gaps = 23/486 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L++Y+LD  R+++    + +++              S+P   I+   V    +    
Sbjct: 406 DMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIASGSVDVECVSMVK 449

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L +          E+L  +YE ++ P+I  +  ME  GI ID + L + +    + L 
Sbjct: 450 ALLAMNEAACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTTRFKEELA 509

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            +++ IY+L+GE FN++SPKQLG ILF K+  P   KTKTG + T A+ L+ +   ++PI
Sbjct: 510 QVQQEIYELAGENFNINSPKQLGVILFEKMNLPIIKKTKTG-YSTDAEVLDMLRH-ESPI 567

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ IL +R ++K+ STY + L   IN +T+R+HT ++   T TGRL+S +PNLQNIP++T
Sbjct: 568 VEKILAYRSVAKLVSTYCEGLAVLINDKTRRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 627

Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           + G++IR  F        L+SADYSQIELRILAH++    L + F    DIHR  AAE+ 
Sbjct: 628 EKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVL 687

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G   + V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+P + EY+
Sbjct: 688 GKAQDDVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYM 747

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           ++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI + AM  
Sbjct: 748 DRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQ 807

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           + + LE+    +++LLQ+HDELV EV   E+    +++ ++M+      + L+VPL V++
Sbjct: 808 MEQKLEEQNFKSRLLLQVHDELVLEVVNSELEAIEELLRNTMQSV----VELQVPLIVDV 863

Query: 967 KVSNNW 972
             + NW
Sbjct: 864 HHAENW 869



 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 197/363 (54%), Gaps = 29/363 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    E    + AV FD
Sbjct: 4   LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + + 
Sbjct: 59  KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                  AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++ +
Sbjct: 119 KFGAPEMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GDS DNIPG+PG+G KTA  L+ EYGNLE++  +   I  KK +E ++E  E A L
Sbjct: 179 KALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYEHIEDISGKKLKERLVENKELAFL 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI--- 299
           SR+L  ++TD+ ++  +E  + ++ +   +    + L FTKL  R+      + A     
Sbjct: 239 SRELATIKTDMELSYKVEDFV-QNFHTSEVQPLFETLGFTKLTPRIVQVMGGEEAAFGDP 297

Query: 300 ----------------EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
                           +  VL  +  ++K +A+   +D  T  +T   + LS+  + + +
Sbjct: 298 GSLFAPQEEISLDDLADAKVLTADFYKDKTVAVHVILDGKTPFRTVTNTYLSNGDTIVKT 357

Query: 344 EQT 346
           + T
Sbjct: 358 DDT 360


>gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 882

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/514 (38%), Positives = 306/514 (59%), Gaps = 16/514 (3%)

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           G    YD   L + G S +     M+++Y L S ++  D  SI Q +L    K I +  K
Sbjct: 378 GKLYTYDLKELLKLGFSFQKPVYDMMIAYHLVSSQTKEDYTSIGQYYL----KTIAEDEK 433

Query: 526 SSIPIDKISDSQVQEHA---IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +     KI    +  +    ++ S ++      L   L  ++L +V    + P+I V++ 
Sbjct: 434 TVFAKQKIETLSIDSYGNFLLKRSQILYSCLEPLEKDLKEKELENVLWETELPLIPVLAS 493

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI+ID+   ++ S E+++ L+ LE+ I+  +GE+FN++SPKQLG+ILF KL  P+G
Sbjct: 494 MEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAGEEFNINSPKQLGEILFLKLNLPTG 553

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T  + LE ++     I  N+LE+R+L+K+K+TY D +P  + K   R+HT 
Sbjct: 554 KKTKTG-FSTDVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMV-KFDDRIHTC 611

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y    T+TGRL+S +PNLQNIP+KT+ G +IR+ FI+    KL+S DYSQ+ELR+LA ++
Sbjct: 612 YHQIGTVTGRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALS 671

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           K   L + ++   D+H + A +IF +   E+VS + R  AK INFSIIYG +PF LA +L
Sbjct: 672 KDENLVKAYQEKQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKEL 731

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I   +AA+YIKRYF ++P + ++  +   F  Q+GYVET FGR+   D I+S    ++N
Sbjct: 732 GISVKDAAEYIKRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN 791

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+N  +QG+AA+I ++ MI ++  L   K    +LLQ+HDEL+FE+ EE +    
Sbjct: 792 QAERMAVNTVVQGTAAEILKKVMIKIYSWLLG-KTDIYLLLQVHDELIFEIQEERVEEYV 850

Query: 942 QIIVHSMEKACLPKINL-RVPLKVNIKVSNNWQE 974
           + + + M+      I L  V L+VN  + N W E
Sbjct: 851 KTLTNFMKNT----IQLEEVELEVNTNIGNTWAE 880



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 153/301 (50%), Gaps = 11/301 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D S+ +YRA+YA   ++ +   +P  A+ GF   L++LL+    E +A+ F +   +
Sbjct: 5   LLLDVSAMMYRAYYAN--MNMRTKEMPTGAVYGFLLTLFQLLKEYEPEYMAAAFDIKRSH 62

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R E+Y +YK+NR   PE LL Q+P +     AFGI  I+I+G+EADD++ + +  
Sbjct: 63  LK---RTELYAEYKSNRDSAPEDLLKQIPYIEAVLDAFGIQRIKIEGYEADDVLGSLSTK 119

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
             K+G  VTI++ DKD+ QL+     +Y   KE     E V     + PEK+  L  L G
Sbjct: 120 LSKKGIPVTIVTGDKDISQLLDENIEIYLLGKEVLKTREDVKNYIDVYPEKIPDLFGLIG 179

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEYAETARL 242
           DS D IPG+  IG K A  +L +Y NLE I  N  ++ +     K   E + E  E A L
Sbjct: 180 DSSDCIPGVRKIGPKKAVPMLDKYENLEGIYENIDKLIEIPGVGKTLIEIMKEDKELAFL 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR L  +  ++  +  LE L  E      L    + LEF   + R+    + +   +  V
Sbjct: 240 SRTLAKIEKNLDFSFSLEDLYFEK-KEEALREIFQKLEFKSFLKRLEQKEEKEQIKVAEV 298

Query: 303 V 303
           +
Sbjct: 299 I 299


>gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 920

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 180/491 (36%), Positives = 295/491 (60%), Gaps = 17/491 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  +  Y+L+  + ++    +A+ +L  T    + SR   +    + D+   E A   + 
Sbjct: 437 DGGVAGYLLNPLKDTYGYDDLARDYLGLT----VPSRADLLAKADLGDALWNEDARAVTC 492

Query: 548 VILQ---LWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
                  +W    P   +L    +  +Y+ ++ P+I  +  ME  G+++++  L++    
Sbjct: 493 ACYMAYTVWKAAAPLTRQLKDTGMYALYKEIEMPLIYSLYHMEQEGVKVERAELEEYGNR 552

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +   ++ LE+ IY  +G++FN++SPKQLG+ILF  +K P G KTKTG + T A  L+++ 
Sbjct: 553 LKVRIVDLEQEIYRDTGKEFNINSPKQLGEILFEDMKMPGGKKTKTG-YSTAADVLDKL- 610

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+++ IL++RQL+K+ STYA+ L  +I +   R+H  ++   T TGR++S EPNLQ
Sbjct: 611 APDYPVVQKILDYRQLTKLNSTYAEGLAAYIGE-DGRIHGKFNQTITATGRISSTEPNLQ 669

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++ +LG++IR+ F+       + ADYSQIELRILAH++    L + + ++ DIH + 
Sbjct: 670 NIPVRMELGREIRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAIT 729

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+E+F V + +V+P  RR+AK +NF I+YGIS F L+  L I R EA +YI +YF  +PG
Sbjct: 730 ASEVFHVPLGEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEAVEYINKYFETYPG 789

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  +++   +  ++ GYV T++GRR    E+ S     R   ER A+N+PIQGSAADI +
Sbjct: 790 VKIFLDGLVSQGKEQGYVTTLYGRRRPIPELKSANFMQRQFGERVAMNSPIQGSAADIMK 849

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V + L    L ++++LQIHDEL+ E  E+EI T  +I+V  M+ A      L+V 
Sbjct: 850 IAMIAVDRELRARNLKSRIVLQIHDELLIETAEDEIGTVKEILVDKMKHAA----ELKVS 905

Query: 962 LKVNIKVSNNW 972
           L+V  +V  +W
Sbjct: 906 LEVEAEVGRSW 916



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 174/307 (56%), Gaps = 19/307 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L+  +    A H AV 
Sbjct: 2   DKLVLIDGHSILNRAFYGVPDLTNS-EGLHTNAVYGFLNIMFKILEEEK----ADHLAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+++Y  YK  R  +PE L  Q+ L++    A G+P + + G+EADDI+ T 
Sbjct: 57  FDLKEPTFRHKMYDAYKGTRKPMPEELHQQVDLMKEVLTAMGVPILTLAGYEADDILGTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDT-VKEE-KIDIEHVIKKWGIP 175
              ++ +G  V+++S D+DL+QL         P T    T VK+    D+E   +++ + 
Sbjct: 117 ARKSQSQGIDVSVVSGDRDLLQLSDEHIKIRIPKTSRGGTEVKDYYPADVE---REYQVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++AL GDS DNIPG+P IG KTA  L+  Y ++EN   +   IK  + R+ + E
Sbjct: 174 PTEFIDVKALMGDSSDNIPGVPSIGEKTATSLIAAYKSIENAYAHLDEIKPPRARKALEE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--VATTYD 293
           + + AR+S++L  + TD P+    E   +++   P    ++K LEF  +++R   +   D
Sbjct: 234 HYDMARMSKELATICTDCPVEFNYEDTRIDNLYTPEAYQYMKRLEFKSILSRFDASAMGD 293

Query: 294 CDAANIE 300
             A+++E
Sbjct: 294 VSASSLE 300


>gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 884

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/514 (38%), Positives = 306/514 (59%), Gaps = 16/514 (3%)

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           G    YD   L + G S +     M+++Y L S ++  D  SI Q +L    K I +  K
Sbjct: 380 GKLYTYDLKELLKLGFSFQKPVYDMMIAYHLVSSQTKEDYTSIGQYYL----KTIAEDEK 435

Query: 526 SSIPIDKISDSQVQEHA---IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +     KI    +  +    ++ S ++      L   L  ++L +V    + P+I V++ 
Sbjct: 436 TVFAKQKIETLSIDSYGNFLLKRSQILYSCLEPLEKDLKEKELENVLWETELPLIPVLAS 495

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI+ID+   ++ S E+++ L+ LE+ I+  +GE+FN++SPKQLG+ILF KL  P+G
Sbjct: 496 MEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAGEEFNINSPKQLGEILFLKLNLPTG 555

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T  + LE ++     I  N+LE+R+L+K+K+TY D +P  + K   R+HT 
Sbjct: 556 KKTKTG-FSTDVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMV-KFDDRIHTC 613

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y    T+TGRL+S +PNLQNIP+KT+ G +IR+ FI+    KL+S DYSQ+ELR+LA ++
Sbjct: 614 YHQIGTVTGRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALS 673

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           K   L + ++   D+H + A +IF +   E+VS + R  AK INFSIIYG +PF LA +L
Sbjct: 674 KDENLVKAYQEKQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKEL 733

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I   +AA+YIKRYF ++P + ++  +   F  Q+GYVET FGR+   D I+S    ++N
Sbjct: 734 GISVKDAAEYIKRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN 793

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+N  +QG+AA+I ++ MI ++  L   K    +LLQ+HDEL+FE+ EE +    
Sbjct: 794 QAERMAVNTVVQGTAAEILKKVMIKIYSWLLG-KTDIYLLLQVHDELIFEIQEERVEEYV 852

Query: 942 QIIVHSMEKACLPKINL-RVPLKVNIKVSNNWQE 974
           + + + M+      I L  V L+VN  + N W E
Sbjct: 853 KTLTNFMKNT----IQLEEVELEVNTNIGNTWAE 882



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 153/301 (50%), Gaps = 11/301 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D S+ +YRA+YA   ++ +   +P  A+ GF   L++LL+    E +A+ F +   +
Sbjct: 7   LLLDVSAMMYRAYYAN--MNMRTKEMPTGAVYGFLLTLFQLLKEYEPEYMAAAFDIKRSH 64

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R E+Y +YK+NR   PE LL Q+P +     AFGI  I+I+G+EADD++ + +  
Sbjct: 65  LK---RTELYAEYKSNRDSAPEDLLKQIPYIEAVLDAFGIQRIKIEGYEADDVLGSLSTK 121

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
             K+G  VTI++ DKD+ QL+     +Y   KE     E V     + PEK+  L  L G
Sbjct: 122 LSKKGIPVTIVTGDKDISQLLDENIEIYLLGKEVLKTREDVKNYIDVYPEKIPDLFGLIG 181

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEYAETARL 242
           DS D IPG+  IG K A  +L +Y NLE I  N  ++ +     K   E + E  E A L
Sbjct: 182 DSSDCIPGVRKIGPKKAVPMLDKYENLEGIYENIDKLIEIPGVGKTLIEIMKEDKELAFL 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR L  +  ++  +  LE L  E      L    + LEF   + R+    + +   +  V
Sbjct: 242 SRTLAKIEKNLDFSFSLEDLYFEK-KEEALREIFQKLEFKSFLKRLEQKEEKEQIKVAEV 300

Query: 303 V 303
           +
Sbjct: 301 I 301


>gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A]
          Length = 893

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 287/992 (28%), Positives = 466/992 (46%), Gaps = 128/992 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  GI GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E+A LS++L  L         ++      C  P     LK  +  K    ++T  D +
Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLE 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +   P++LD   T      +E     D+  K S+   L       N+E  P   FLE+L
Sbjct: 292 NSPT-PLILDNTPT------LENTPASDSAPKKSRLIVLE------NTE--PLSAFLEKL 336

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +         +S  +I                     ++  D       K +A+A    D
Sbjct: 337 K---------NSNARIF-------------------MRLALDK----EKKVLALAFLYED 364

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473
           Q      + E +F   S+   Q++                FF+  +H   IGH++K    
Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLLS 407

Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIP 529
            +  +Y +S+     +D  +++++ +  +   D              E+LK   ++  IP
Sbjct: 408 FLKAKYQVSVEDIRIQDTQILAFLKNPEKVGFD--------------EVLKQYLKEEWIP 453

Query: 530 IDKISDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            +KI D + +  A +        N + +L        + E LL +   ++ P + V+  M
Sbjct: 454 HEKIKDFKTKNKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAREVETPFVKVLMGM 513

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G +ID    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P   
Sbjct: 514 EFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKN- 572

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           K+ +   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +
Sbjct: 573 KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 626

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762
               T TGRL+S  PNLQNIP+++  G  IR+ FIS   +  L+  DYSQIELR+LAH +
Sbjct: 627 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFISSSKEYCLLGVDYSQIELRLLAHFS 686

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L 
Sbjct: 687 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 743

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D +      I+  
Sbjct: 744 IPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGV-NDHIKGN 802

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      +
Sbjct: 803 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALELQR 861

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   +     P   LRVPL+ +  ++  W E
Sbjct: 862 EIQRILNDEVYP---LRVPLETSAFIAKRWNE 890


>gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 911

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/510 (38%), Positives = 306/510 (60%), Gaps = 14/510 (2%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKE--ILKSRK 525
           I Y+   L   GIS +     M+++Y L S ++  D I  I +    Y++ E    K+  
Sbjct: 410 ISYNFKALLNLGISFKSMYMDMMIAYHLISSQTKIDPIIPITE----YSKLEPKDFKTAF 465

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             + ++ I+     ++  + S  IL ++  L   L  E L  +    + P+I V+S ME 
Sbjct: 466 GKVNVELITAQDFSKYLSDISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMER 525

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KT
Sbjct: 526 KGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 585

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T    LE +      I + +L++R+L+K+K+TY D+LP  +++ + R+HT ++ 
Sbjct: 586 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTSFNQ 643

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S EPNLQNIP+KTD G KIR  FI+   K L+S DYSQ+ELR+L  ++K  
Sbjct: 644 IGTATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDE 703

Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + +    D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP
Sbjct: 704 NLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 763

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             +A++YIK+YF ++P +  + ++   F  ++GYV+T+FGR+ +   I+S   +I++  E
Sbjct: 764 VKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 823

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N  IQG+AA++ ++ M+ V+  L+D K    +LLQ+HDEL+FEV +  +   S I+
Sbjct: 824 RMAVNTVIQGTAAEVLKKVMVKVYDILKD-KEDIALLLQVHDELIFEVEKNSVEKYSGIL 882

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M+     +    V L +NI +  NW E
Sbjct: 883 ADIMKNTVQLE---DVKLNININIGKNWAE 909



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 147/293 (50%), Gaps = 18/293 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + + +A+ F V     
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +   R EIY DYK+NR   PE L+ Q+P +  A +AF I   +I+G+EADD++ +     
Sbjct: 61  SSLKRTEIYSDYKSNRQSAPEDLIKQIPRIEEALEAFNINRYKIEGYEADDVLGSLAKKL 120

Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
            K+   V I++ DKDL QLV        L    + EK       + V+   G+ PEK+  
Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGTLKTSDDVVNYLGVVPEKIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +N++  
Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALSIFSQYDSLEKIYENIDNLKSIDGIGPSLIKNLINE 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            + A +SR+L  + T++ IT+  E  +    +  +L S  K LEF   I ++ 
Sbjct: 241 KDIAFMSRELAKIFTNLDITVE-EDGLQYGMDREKLYSLCKVLEFKMFIKKLG 292


>gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33]
 gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33]
 gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84]
 gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407]
 gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 05ZYH33]
 gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 98HAH33]
 gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84]
 gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407]
 gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1]
          Length = 878

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/405 (43%), Positives = 257/405 (63%), Gaps = 7/405 (1%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+ +V+++MEI GI+++ + LK + +E    +  L + IY+L+G++FN++SPKQLG 
Sbjct: 477 MELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGT 536

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF  +  P     KT    +TA D+ +      P++  ILE+RQ++K++STY   L + 
Sbjct: 537 ILFEDMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDA 596

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750
           I     ++HT Y    T TGRL+S +PNLQNIP++ + G+ IR+AF+ S     L+++DY
Sbjct: 597 I-LEDGKIHTRYVQDLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDY 655

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSII 809
           SQIELR+LAHI++   L + F+   DIH   A  +FG+   E V+P  RR+AK +NF ++
Sbjct: 656 SQIELRVLAHISQDQHLIEAFQQGADIHTSTAMRVFGIEKAEYVTPNDRRNAKAVNFGVV 715

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS F L+  L I R EA  YI  YF RFPGI  Y+E      R  GYVETI+ RR   
Sbjct: 716 YGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRREL 775

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +INS   ++RN  ER AIN+PIQGSAADI + AMI++ K+L +  LAT+MLLQ+HDE+V
Sbjct: 776 PDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EVP  E+ T   ++  +ME A    I+L VPL  +    + W E
Sbjct: 836 LEVPVAELETVKAMVKETMESA----ISLSVPLIADENEGSTWYE 876



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/315 (37%), Positives = 169/315 (53%), Gaps = 22/315 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           K+N L L+DGSS  +RAF+A  L +     +  +GL  NAI GF  ML  +++  R E  
Sbjct: 2   KKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNANGLHTNAIYGFNLMLDHMMK--RIEP- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A G+   E+  +EA
Sbjct: 57  -THILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELDQYEA 115

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 116 DDIIGTLDKMAERTDIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+L+ I  N   +K  K +E
Sbjct: 176 MGISPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSLDGIYENIDSMKASKMKE 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   E A LSR L  + T  PI I L+ ++ +      L  F   + F +L  ++ TT
Sbjct: 236 NLIADKEKAFLSRTLATIDTQAPIEIGLDDIVYQGPKVDELGQFYDDMGFKQLRAQLGTT 295

Query: 292 YDCDAANIEPVVLDI 306
                ++ E  VLD 
Sbjct: 296 -----SSQEEAVLDF 305


>gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
 gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
          Length = 879

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/533 (36%), Positives = 314/533 (58%), Gaps = 26/533 (4%)

Query: 454 KKFFENE--------HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504
           ++FF NE         F+K  ++ K    +  R G+++ G   D+ ++SY++D    + +
Sbjct: 355 EQFFTNEFVVEYLQSEFVKTVYDFKKILFIAKRNGVNINGEVFDVKIVSYLIDVNAKT-E 413

Query: 505 IASIAQKWLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           I  I   +L     + +EI  K  K ++P    S   +  +  E +  I  +  L+  KL
Sbjct: 414 IDKIVFNYLGKIIKSDEEIYGKGAKRTLP----SQDVINPYIAEVAESIALMKPLMEEKL 469

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
             E +  +Y+ ++  +  V++ ME  GI + +  L+++SAE  + + +LE +IY L+G +
Sbjct: 470 AEENMTDLYKDIEIKVAKVLANMEFEGIHVSKKALEEMSAEFDERIKTLESSIYTLAGSE 529

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN++SPKQLG +LF  L  P   KTKTG + T  + LEQ+    + II  I+E+R ++K+
Sbjct: 530 FNIASPKQLGVVLFEDLGLPPIKKTKTG-YSTAVEVLEQLQHS-HEIIPLIMEYRTITKL 587

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            STYA  L   I  R  ++HT Y      TGRL+S+ PNLQNIP + + G+KIR+AF+  
Sbjct: 588 NSTYAKGLVKDIT-REGKIHTRYEQTLAQTGRLSSVNPNLQNIPTRIEEGKKIRKAFVPA 646

Query: 741 PTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
              ++I S DYSQIELR+LAHIA+   +   F++ +DIH   A+++ GV++++V+  MRR
Sbjct: 647 SEDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVSLDQVTSSMRR 706

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF I+YGIS F L+  L I R  A ++I +Y   F G+ +Y+     F +++GYV
Sbjct: 707 EAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFKGVDKYMTDIVEFAKEHGYV 766

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+F RR    +IN+    + N+N R A+N+PIQG+AADI + AM++V + LE  K+  K
Sbjct: 767 ETLFNRRRALPDINAKNKIVANLNARIAMNSPIQGTAADIIKIAMVNVFEYLEKTKVDAK 826

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +LLQ+HDEL+F+V ++     ++ ++  ME+A     NL V LK       +W
Sbjct: 827 LLLQVHDELIFDVNKDIEEDFTKEMIKIMEEAA----NLDVQLKAEASSGASW 875



 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 172/305 (56%), Gaps = 13/305 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG+S  YRAFYA P L  K  GL  N++ GF  ML K+L +++      +  V 
Sbjct: 2   DKIILIDGNSLSYRAFYAMPALKNKK-GLYTNSVYGFTLMLEKILADTK----PKYALVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y  YK  R K P  L+ Q   VR    ++GI   E   +EADDII++Y
Sbjct: 57  FDKGKQTFRHQSYEAYKGTRDKTPSELVEQFGYVRELLDSYGIKYEEHFDYEADDIISSY 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKM 179
             IAEKEG  V I++ DKDL QL S    +Y T K    DI     E + +K+G+ PE++
Sbjct: 117 AKIAEKEGLEVIIVTGDKDLTQLASENITIYYT-KRGVTDIDYYTPEFIAEKYGLTPEQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V ++ L GD  DNIPGI G+G KTA  LL EY  +EN+L N   I  KK +E + E  E 
Sbjct: 176 VDMKGLMGDKSDNIPGIAGVGEKTAIKLLTEYKTVENVLENIDNISGKKLKERLTEGRED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPR-LISFLKALEFTKLINRVATTYDCDAA 297
           A LS+KL  + T+VP+   LE L   E+    R L   L+ + F + +++  +T D D A
Sbjct: 236 ALLSKKLATIYTEVPVDNKLEDLTYSENIELKRELFEKLEFVSFLRKLSQETSTEDVDVA 295

Query: 298 NIEPV 302
           N E V
Sbjct: 296 NEETV 300


>gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6]
 gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6]
          Length = 877

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R   YVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 911

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/510 (38%), Positives = 306/510 (60%), Gaps = 14/510 (2%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKE--ILKSRK 525
           I Y+   L   GIS +     M+++Y L S ++  D I  I +    Y++ E    K+  
Sbjct: 410 ISYNFKALLNLGISFKSMYMDMMIAYHLISSQTKIDPIIPITE----YSKLEPKDFKTAF 465

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             + ++ I+     ++  + S  IL ++  L   L  E L  +    + P+I V+S ME 
Sbjct: 466 GKVNVELITAQDFSKYLSDISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMER 525

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KT
Sbjct: 526 KGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 585

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T    LE +      I + +L++R+L+K+K+TY D+LP  +++ + R+HT ++ 
Sbjct: 586 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTSFNQ 643

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S EPNLQNIP+KTD G KIR  FI+   K L+S DYSQ+ELR+L  ++K  
Sbjct: 644 IGTATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDE 703

Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + +    D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP
Sbjct: 704 NLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 763

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             +A++YIK+YF ++P +  + ++   F  ++GYV+T+FGR+ +   I+S   +I++  E
Sbjct: 764 VKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 823

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N  IQG+AA++ ++ M+ V+  L+D K    +LLQ+HDEL+FEV +  +   S I+
Sbjct: 824 RMAVNTVIQGTAAEVLKKVMVKVYDILKD-KEDIALLLQVHDELIFEVEKNSVEKYSGIL 882

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M+     +    V L +NI +  NW E
Sbjct: 883 ADIMKNTVQLE---DVKLNININIGKNWAE 909



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 147/293 (50%), Gaps = 18/293 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + + +A+ F V     
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +   R EIY DYK+NR   PE L+ Q+P +  A +AF I   +I+G+EADD++ +     
Sbjct: 61  SSLKRTEIYSDYKSNRQSAPEDLIKQIPRIEEALEAFNINRYKIEGYEADDVLGSLAKKL 120

Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
            K+   V I++ DKDL QLV        L    + EK       + V+   G+ PEK+  
Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGTLKTSDDVVNYLGVVPEKIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +N++  
Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALSIFSQYDSLEKIYENIDNLKSIDGIGPSLIKNLINE 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            + A +SR+L  + T++ IT+  E  +    +  +L S  K LEF   I ++ 
Sbjct: 241 KDIAFMSRELAKIFTNLDITVE-EDGLQYGMDRRKLYSLCKVLEFKMFIKKLG 292


>gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
 gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
          Length = 912

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 193/507 (38%), Positives = 304/507 (59%), Gaps = 8/507 (1%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           I Y+   L   GI  +     M+++Y L S ++  D      ++ +   K+  K+    I
Sbjct: 411 ISYNFKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPIIPITEYSTLEPKD-FKTAFGKI 469

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++ I+     ++  + S  IL ++  L   L  E L  +    + P+I V+S ME  GI
Sbjct: 470 NVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYKILMENEMPLIPVLSLMERKGI 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGD+LF KL  PSG KTKTG
Sbjct: 530 EIDVQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDVLFVKLNLPSGKKTKTG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T    LE +      I + +L++R+L+K+K+TY D+LP  +++ + R+HT ++   T
Sbjct: 590 -YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQIGT 647

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K   L 
Sbjct: 648 ATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLI 707

Query: 769 QVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           + ++   D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP  +
Sbjct: 708 EAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKD 767

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A++YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  ER A
Sbjct: 768 ASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMA 827

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N  IQG+AA++ ++ M+ V+  L+D K    +LLQ+HDEL+FEV E  +   S+I+   
Sbjct: 828 VNTVIQGTAAEVLKKVMVKVYDVLKD-KEDIALLLQVHDELIFEVEENSVEKYSEILADI 886

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+     +    V L +NI +  NW E
Sbjct: 887 MKNTVQLE---DVKLNININIGKNWAE 910



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 18/293 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + + +A+ F V     
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +   R EIY DYK+NR   PE L+ Q+P +     AF I   +I+G+EADD++ +     
Sbjct: 61  SSLKRTEIYSDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIEGYEADDVLGSLAKKI 120

Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
            K+   V I++ DKDL QLV        L    + EK  I    E VI   G+ PEK+  
Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSEDVINYLGVVPEKIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +N++  
Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIKNLINE 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            + A +SR+L  + TD+ I++  E  +    +  +L S  K LEF   I ++ 
Sbjct: 241 KDIAFMSRELAKIFTDLDISVE-ESGLQYGMDREKLYSLCKILEFKMFIKKLG 292


>gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
 gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
          Length = 420

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 175/419 (41%), Positives = 257/419 (61%), Gaps = 7/419 (1%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
            + KL    +L +YE ++ P +  +  ME+ GI +D+  LK+   ++   +  L E IY 
Sbjct: 7   FKKKLTETGMLSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYK 66

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
            +GE+FN++SPKQLG +LF  +K   G KTKTG + T+   LE+I     PII  ILE+R
Sbjct: 67  EAGEEFNINSPKQLGVVLFEHMKLEGGKKTKTG-YSTSVDVLEKIEH-LYPIISYILEYR 124

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           QL+K+KSTYAD L N+I    +R+H  ++   T TGR++S EPNLQNIP + +LG+ IR+
Sbjct: 125 QLTKLKSTYADGLANYIGD-DERIHGKFNQTITATGRISSTEPNLQNIPARVELGRAIRK 183

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F+       + ADYSQIELR+LAH+++   L   +E   DIH   A+E+FGV I++VS 
Sbjct: 184 VFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHARTASEVFGVPIDQVSS 243

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR AK +NF I+YG+S F L+  L+I R +A +YI +YF  +P + +Y+ +     ++
Sbjct: 244 IQRRDAKAVNFGIVYGLSAFGLSQDLKITRKQAQEYIDKYFETYPKVKKYLNREVEKGKE 303

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            G+V T+F R     E+ S     RN  ER A+N+PIQGSAADI + AMI V+  L+  K
Sbjct: 304 EGFVTTMFQRIRPIPELKSSNFMQRNFGERVAMNSPIQGSAADIIKIAMIRVNMELKKRK 363

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L ++++LQIHDEL+ E  + E+     I+   M  A      L VPL ++I   N+W E
Sbjct: 364 LKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAA----KLSVPLSIDIHTGNSWYE 418


>gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11]
          Length = 912

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 194/507 (38%), Positives = 304/507 (59%), Gaps = 8/507 (1%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           I Y+   L   GI  +     M+++Y L S ++  D      ++ +   K+  K+    I
Sbjct: 411 ISYNFKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPIIPITEYSTLEPKD-FKTAFGKI 469

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++ I+     ++  + S  IL ++  L   L  E L  +    + P+I V+S ME  GI
Sbjct: 470 NVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYKILMENEMPLIPVLSLMERKGI 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KTKTG
Sbjct: 530 EIDVQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKTKTG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T    LE +      I + +L++R+L+K+K+TY D+LP  +++ + R+HT ++   T
Sbjct: 590 -YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQIGT 647

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K   L 
Sbjct: 648 ATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLI 707

Query: 769 QVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           + ++   D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP  +
Sbjct: 708 EAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKD 767

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A++YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  ER A
Sbjct: 768 ASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMA 827

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N  IQG+AA++ ++ M+ V+  L+D K    +LLQ+HDEL+FEV E  +   S+I+   
Sbjct: 828 VNTVIQGTAAEVLKKVMVKVYDVLKD-KEDIALLLQVHDELIFEVEENSVEKYSEILADI 886

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+     +    V L +NI +  NW E
Sbjct: 887 MKNTVQLE---DVKLNININIGKNWAE 910



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 144/293 (49%), Gaps = 18/293 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + + +A+ F V     
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINKFKPDYMAAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +   R EIY DYK+NR   PE L+ Q+P +     AF I   +I+G+EADD++ +     
Sbjct: 61  SSLKRTEIYSDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIEGYEADDVLGSLAKKI 120

Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
            K+   V I++ DKDL QLV        L    + EK  I    E VI   G+ PEK+  
Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSEDVINYLGVVPEKIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          + ++  
Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIKILINE 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            + A +SR+L  +  D+ I++  E  +    N  +L S  K LEF   I ++ 
Sbjct: 241 KDIAFMSRELAKIFIDLDISVE-ESGLQYGMNREKLYSLCKILEFKMFIKKLG 292


>gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
          Length = 882

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/514 (38%), Positives = 305/514 (59%), Gaps = 16/514 (3%)

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           G    YD   L + G S +     M+++Y L S ++  D  SI Q +L    K I +  K
Sbjct: 378 GKLYTYDLKELLKLGFSFQKPVYDMMIAYHLVSSQTKEDYTSIGQYYL----KTIAEDEK 433

Query: 526 SSIPIDKISDSQVQEHA---IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                 KI    +  +    ++ S ++      L   L  ++L +V    + P+I V++ 
Sbjct: 434 IVFAKQKIETLSIDSYGNFLLKRSQILYSCLDSLEKDLKEKELENVLWETELPLIPVLAS 493

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI+ID+   ++ S E+++ L+ LE+ I+  +GE+FN++SPKQLG+ILF KL  P+G
Sbjct: 494 MEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAGEEFNINSPKQLGEILFLKLNLPTG 553

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T  + LE ++     I  N+LE+R+L+K+K+TY D +P  + K   R+HT 
Sbjct: 554 KKTKTG-FSTDVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMV-KFGDRIHTC 611

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y    T+TGRL+S +PNLQNIP+KT+ G +IR+ FI+    KL+S DYSQ+ELR+LA ++
Sbjct: 612 YHQIGTVTGRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALS 671

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           K   L + ++   D+H + A +IF +   E+VS + R  AK INFSIIYG +PF LA +L
Sbjct: 672 KDENLVKAYQEKQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKEL 731

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I   +AA+YIKRYF ++P + ++  +   F  Q+GYVET FGR+   D I+S    ++N
Sbjct: 732 GISVKDAAEYIKRYFEQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN 791

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+N  +QG+AA+I ++ MI ++  L   K    +LLQ+HDEL+FE+ EE +    
Sbjct: 792 QAERMAVNTVVQGTAAEILKKVMIKIYSWLLG-KTDIYLLLQVHDELIFEIQEERVEEYV 850

Query: 942 QIIVHSMEKACLPKINL-RVPLKVNIKVSNNWQE 974
           + + + M+      I L  V L+VN  + N W E
Sbjct: 851 KTLTNFMKNT----IQLEEVELEVNTNIGNTWAE 880



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 152/301 (50%), Gaps = 11/301 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D S+ +YRA+YA   +  K   +P  A+ GF   L++LL+    E +A+ F +   +
Sbjct: 5   LLLDVSAMMYRAYYANMNMRTKE--MPTGAVYGFLLTLFQLLKEYEPEYMAAAFDIKRSH 62

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R E+Y +YK+NR   PE LL Q+P +     AFGI  I+I+G+EADD++ + +  
Sbjct: 63  LK---RTELYAEYKSNRDSAPEDLLKQIPYIEAVLDAFGIQRIKIEGYEADDVLGSLSTK 119

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
             K+G  VTI++ DKD+ QL+     +Y   KE     E V     + PEK+  L  L G
Sbjct: 120 LSKKGIQVTIVTGDKDISQLLDENIEIYLLGKEVLKTREDVKNYIDVYPEKIPDLFGLIG 179

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEYAETARL 242
           DS D IPG+  IG K A  +L +Y NLE I  N  ++ +     K   E + E  E A L
Sbjct: 180 DSSDCIPGVRKIGPKKAVPMLDKYENLEGIYENIDKLIEIPGVGKTLIEIMKEDKELAFL 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR L  +  ++  +  LE L  E      L    + LEF   + R+    + +   +  V
Sbjct: 240 SRTLAKIEKNLDFSFSLEDLYFEK-KEEALREIFQKLEFKSFLKRLEQKEEKEQIKVAEV 298

Query: 303 V 303
           +
Sbjct: 299 I 299


>gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301]
          Length = 877

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R   YVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|332205064|gb|EGJ19127.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368]
          Length = 877

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R   YVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/285 (38%), Positives = 153/285 (53%), Gaps = 11/285 (3%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R  +  GL  NAI GF  ML  LL+        SH  V
Sbjct: 6   LLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHILV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P + 
Sbjct: 122 LDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 182 IDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKEQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 242 AFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
 gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
          Length = 874

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 174/410 (42%), Positives = 247/410 (60%), Gaps = 10/410 (2%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           EKLL+    ++ P+  V++ ME  G  +D   L+    E+   +      I + +G  FN
Sbjct: 471 EKLLY---EIEMPLARVLAGMECEGFALDTQALRDYGGELDDRIDETHAAIVEYAGYDFN 527

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           L+SPKQLGD+LF KL  P+  KTKTG + T    LE +    +PII  ILE+R+LSK+KS
Sbjct: 528 LNSPKQLGDVLFVKLGLPAKKKTKTG-YSTNVDVLEALRP-QHPIIGEILEYRKLSKLKS 585

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D L   +     RV + +    T TGR++S EPNLQNIPI+T+ G ++RR F + P 
Sbjct: 586 TYVDGLLKVVGP-DGRVRSTFQQTETRTGRISSTEPNLQNIPIRTEEGSRMRRFFTARPG 644

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            KL+ ADYSQIELR+LA +A    +   F++  DIH   AA++FG+    V+P MR  AK
Sbjct: 645 WKLVDADYSQIELRVLADLADDQNMIAAFQSGEDIHATTAAQVFGMPGGTVTPLMRSRAK 704

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGI  F L+  + +  SEA  YIK Y   + G+ +Y+E T  F R+NGYV+T+
Sbjct: 705 AVNFGIVYGIGAFSLSQDIGVTVSEADSYIKSYLAHYAGVRKYMEDTIAFARENGYVKTL 764

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           FGRR +  E+ +     +   ER A N PIQG+AADI + AM+ V + L    L  +++L
Sbjct: 765 FGRRRYLPELAASNKVTQAFGERVARNTPIQGTAADIIKIAMVRVFERLRREGLRARLIL 824

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           Q+HDEL+ E P++EI  A  I+   ME A    I L+VPL+ +  V +NW
Sbjct: 825 QVHDELLVEAPDDEIDRARAILKEEMEHA----IALKVPLEADTNVGDNW 870



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 138/264 (52%), Gaps = 28/264 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L  VDG+S + RA+Y    L+ K+ G   N I GF ++L ++L  +  +++A    V FD
Sbjct: 9   LLAVDGNSILNRAYYGIKALTTKN-GEFTNGIYGFLSILLRVLDEAEPDAVA----VAFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y  YKA R  +P  L  QL  ++    A G   +  +G+EADDI+ T   
Sbjct: 64  LRAPTFRHKLYDGYKAQRKGMPHELASQLEPLKELLGALGFQIVTCEGYEADDILGTLAR 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVS--------------PTTCLYDTVKEEKIDIEHVIKKW 172
            + + G+   I + D+D +QLV               P + LYD           V +K+
Sbjct: 124 SSAETGWDCVIATGDRDSLQLVGPHVSVRLATTKMGQPASTLYDETA--------VREKY 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-RE 231
           G+ P ++V ++AL GD+ DNIPG+ GIG KTA  L+ +Y +++ I      ++ K   R+
Sbjct: 176 GVEPAQLVDVKALMGDASDNIPGVAGIGEKTALSLIGQYHDIDAIYAQLDTLEIKPGVRK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPI 255
            + E  E A  SRKL  +  D PI
Sbjct: 236 KLGEGKEMAYTSRKLGEICCDAPI 259


>gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 880

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/494 (37%), Positives = 310/494 (62%), Gaps = 11/494 (2%)

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           + F DI + +Y+++  + S+ +  IA  ++     ++ E++   K +  + + +D +   
Sbjct: 393 KNFYDISVAAYLINPLKDSYFVEDIAGDYMGSACSSKSEMIGKAKLN-EVLRFNDEKAIN 451

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +    S V +     +  KL    L  +Y+ ++ P+I  +++ME TG+++D++ LK+ + 
Sbjct: 452 YFAMESYVAVHSGENILKKLSELGLDDLYKNIEMPLIYSLAKMENTGVRVDEERLKKYAN 511

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            + + +  LEE+I   +GE FN++SPKQLG+ILF KLK   G KTKTG + T A  LE++
Sbjct: 512 TLLEKIDKLEESIISKAGESFNINSPKQLGEILFGKLKLSGGKKTKTG-YSTAADVLEKL 570

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++ II++ILE+RQL+K+ STYA  L  +I +   R+H  ++   T TGR++S EPNL
Sbjct: 571 AL-EHEIIRDILEYRQLTKLNSTYATGLAGYI-REDGRIHGTFNQTITATGRISSTEPNL 628

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T++G KIR  F+  P    + ADYSQIELR+LA ++    L + + ++ DIH  
Sbjct: 629 QNIPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRVLASLSGDEKLIESYHSAADIHAA 688

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+++F V +E+V+P++RR+AK +NF ++YGIS F L+  L I R EA DYI  YF  + 
Sbjct: 689 TASQVFHVPLEEVTPELRRNAKAVNFGVVYGISAFGLSEDLSISRKEALDYINNYFKIYG 748

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ ++++K     ++ G+V+T+FGR     EI S     R+  +R A+N+PIQGSAADI 
Sbjct: 749 GVKKFLDKQVADAKEKGFVKTMFGRIRPIPEIKSSNFMTRSFGDRVAMNSPIQGSAADIM 808

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + +M+ V ++L++      ++LQIHDEL+ EV EEE    S+++  +M++A    ++L+V
Sbjct: 809 KISMLKVDEALKESGYDANIVLQIHDELLIEVKEEEAEKVSKLVEKTMKEA----VSLKV 864

Query: 961 PLKVNIKVSNNWQE 974
           PL+V+  +   W E
Sbjct: 865 PLEVDAHIGKTWLE 878



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 107/320 (33%), Positives = 176/320 (55%), Gaps = 31/320 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RAFY  P LS    G+  NA+ GF N+++K+L     E  A + AV FD
Sbjct: 4   LVLIDGHSILNRAFYGVPELSNSQ-GVHTNAVYGFLNIMFKVLD----EEAADYIAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y +YK  R  +P+ L  Q+PL++    +  IP +  +G+EADDII T   
Sbjct: 59  LSAPTFRHKAYAEYKGTRKSMPDELREQVPLIKEVLSSMNIPILTKEGYEADDIIGTIAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP------------TTCLYDTVKEEKIDIEHVIKKWGI 174
             + +   V+++S D+DL+QL                T ++D + E+      V+ ++G+
Sbjct: 119 RYQSDEVFVSVLSGDRDLLQLSDTHIKIRIPKTSKGVTTVHDYLPED------VMNEYGV 172

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++ + ++AL GD+ DN+PG+P IG KTA  ++QEY ++EN + +  ++K  +  + + 
Sbjct: 173 TPKEFIDVKALMGDTSDNVPGVPSIGEKTATKIIQEYHSIENAIEHVDKLKPPRASKALA 232

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR---VATT 291
           E+ E A+ S+ LV + TD PI   +  +++ +      + ++  LEF   + R   V TT
Sbjct: 233 EHIEDAKFSKMLVTIVTDAPIETEISDMVVGNLYTKESLEWINKLEFKSFLKRYENVETT 292

Query: 292 YDCDAANIEPVVLDINTTEN 311
                +NIE     INT EN
Sbjct: 293 -----SNIEIETDIINTGEN 307


>gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545]
          Length = 877

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R   YVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1]
 gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1]
          Length = 912

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 194/507 (38%), Positives = 304/507 (59%), Gaps = 8/507 (1%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           I Y+   L   GI  +     M+++Y L S ++  D      ++ +   K+  K+    I
Sbjct: 411 ISYNFKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPIIPITEYSTLEPKD-FKTAFGKI 469

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++ I+     ++  + S  IL ++  L   L  E L  +    + P+I V+S ME  GI
Sbjct: 470 NVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYKILMENEMPLIPVLSLMERKGI 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KTKTG
Sbjct: 530 EIDVQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKTKTG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T    LE +      I + +L++R+L+K+K+TY D+LP  +++ + R+HT ++   T
Sbjct: 590 -YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQIGT 647

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K   L 
Sbjct: 648 ATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLI 707

Query: 769 QVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           + ++   D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP  +
Sbjct: 708 EAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKD 767

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A++YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  ER A
Sbjct: 768 ASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMA 827

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N  IQG+AA++ ++ M+ V+  L+D K    +LLQ+HDEL+FEV E  +   S+I+   
Sbjct: 828 VNTVIQGTAAEVLKKVMVKVYDVLKD-KEDIALLLQVHDELIFEVEESSVEKYSRILADI 886

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+     +    V L +NI +  NW E
Sbjct: 887 MKNTVQLE---DVKLNININIGKNWAE 910



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 18/293 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + + +A+ F V     
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +   R EIY DYK+NR   PE L+ Q+P +     AF I   +I+G+EADD++ +     
Sbjct: 61  SSLKRTEIYSDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIEGYEADDVLGSLAKKI 120

Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
            K+   V I++ DKDL QLV        L    + EK  I    E VI   G+ PEK+  
Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSEDVINYLGVVPEKIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +N++  
Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIKNLINE 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            E A +SR+L  + TD+ I++  E  +    +  +L S  K LEF   I ++ 
Sbjct: 241 KEIAFMSRELAKIFTDLDISVE-ESGLQYGMDREKLYSLCKILEFKMFIKKLG 292


>gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515]
 gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515]
          Length = 880

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 207/558 (37%), Positives = 316/558 (56%), Gaps = 34/558 (6%)

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +TI+    V   Q++  K  L+K I +Y               + K  K++L+R+ I + 
Sbjct: 347 DTIYATSDVSLLQEALFKKALSKPIKTY---------------DFKRSKVLLNRFNIDLP 391

Query: 485 --GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQV 538
              F D  L  Y+L S    + +++IA+ +    L        K  K +IP      ++ 
Sbjct: 392 EPAF-DTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRF 445

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            EH  +   V++     +  +L   +   +   +++P+ +V+++MEI GI++ ++ L ++
Sbjct: 446 LEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEM 505

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           + E  K + +L + IY+L+G++FN++SPKQLG +LF  L  P     KT    +TA D+ 
Sbjct: 506 AIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVL 565

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +P++  ILE+RQ++K++STY   L ++I     ++HT Y    T TGRL+S +P
Sbjct: 566 ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDP 624

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+ IR+AF+ S     L+S+DYSQIELR+LAHI+K   L   F+   DI
Sbjct: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L IPR  A  YI  YF
Sbjct: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYF 744

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PGI  Y+E      +  GYVET+F RR    +INS   +IR   ER AIN+PIQGSA
Sbjct: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI++ + L      +KMLLQ+HDE+V EVP EEI    +++  +ME A    I
Sbjct: 805 ADILKIAMINLDRVLYKGGYKSKMLLQVHDEIVLEVPNEEIGAIKELVTKTMESA----I 860

Query: 957 NLRVPLKVNIKVSNNWQE 974
           +L VPL  +      W E
Sbjct: 861 SLSVPLIADENAGETWYE 878



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 20/287 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +N L L+DGSS  +RAF+A  L +     + + GL  NAI GF  ML  +L   +  
Sbjct: 1   MTNKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E++ +
Sbjct: 57  --PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114

Query: 116 EADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T    AE  KE F +T++S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLAKQAEASKEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N   +KQ K 
Sbjct: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           +EN++   E A LS+ L  +    PITI LE ++    +GP+ I  L
Sbjct: 235 KENLINDKEQAFLSKTLATINIASPITIGLEDIL---YSGPQDIKAL 278


>gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
 gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
          Length = 880

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 190/494 (38%), Positives = 307/494 (62%), Gaps = 11/494 (2%)

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           + F D+ + +Y+++  + S+ +  IA+ ++     ++ E++   K S  + K +D + ++
Sbjct: 393 KNFYDLSVAAYLINPLKDSYFVEDIARDYMGSGVSSKAEMIGKSKLS-EVLKFNDEKAEK 451

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +    S V L     L  KL   +L  +YE ++ P+I  +++ME TG+++D+  LK  + 
Sbjct: 452 YFASESYVALFASDYLLKKLNELELTRLYENVELPLIYSLARMENTGVRVDEKRLKDYAD 511

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            + + +  LE +I D +GE FN++SPKQLG+ILF KLK   G KTKTG + T A  LE++
Sbjct: 512 TLLEKISKLEASIIDKAGESFNINSPKQLGEILFGKLKLSGGKKTKTG-YSTAADVLEKL 570

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++ II++ILE+RQL+K+ STYA  L  +I +   R+H  ++   T TGR++S +PNL
Sbjct: 571 -APEHEIIRDILEYRQLTKLNSTYATGLAGYI-RDDGRIHGSFNQTITATGRISSTDPNL 628

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T++G KIR  F+  P    + ADYSQIELR+LA ++    L + +  + DIH  
Sbjct: 629 QNIPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRVLASMSGDEKLIESYHTAADIHAA 688

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AA++F V ++KV+P++RR+AK +NF ++YGIS F L+  L I R EA DYI  YF  + 
Sbjct: 689 TAAQVFHVPLDKVTPELRRNAKAVNFGVVYGISAFGLSEDLSISRKEALDYINNYFKIYE 748

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  +++K     ++ GYV+T+FGR     EI S     R+  +R A+N+PIQGSAADI 
Sbjct: 749 GVKRFLDKQVADAKEKGYVKTMFGRIRPIPEIKSSNFMTRSFGDRVAMNSPIQGSAADIM 808

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI V ++L        ++LQIHDEL+ EV ++E+    +I+  SM +A    ++L+V
Sbjct: 809 KIAMIRVDEALNKSGFDANIVLQIHDELLVEVRKDEVYKVKEIVERSMREA----VSLKV 864

Query: 961 PLKVNIKVSNNWQE 974
           PL+V+  +   W E
Sbjct: 865 PLEVDAHIGKTWLE 878



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 185/347 (53%), Gaps = 29/347 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RAFY  P LS    GL  NAI GF N+++K+L     E  A + AV FD
Sbjct: 4   LVLIDGHSILNRAFYGVPELSNSQ-GLHTNAIYGFLNIMFKILD----EEAADYIAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y +YK  R  +P+ L  Q+P+++    +  IP +  +G+EADDII T   
Sbjct: 59  LSAPTFRHKAYAEYKGTRKSMPDELREQVPIIKDVLSSMNIPILTKEGYEADDIIGTVAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
             + E   V+IIS D+DL+QL         P T    T   + +  E VI ++G+ P + 
Sbjct: 119 KYQSEDVFVSIISGDRDLLQLSDKHIKIRIPKTSKGVTTTHDYLP-EDVISEYGVTPHEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DN+PG+P IG KTA  ++QEY ++EN + + + +K ++  + + E  + 
Sbjct: 178 IDVKALMGDTSDNVPGVPSIGEKTATKIIQEYHSIENAIEHVNELKPQRASKALSENIKE 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-----VATTYDC 294
           A+ S+ LV + TD PI   L  + + +      + ++  LEF   + R      A +   
Sbjct: 238 AKFSKMLVTIVTDAPIETELSDMKVGNLYTKESLEWINKLEFKSFLKRYENVETAASIKL 297

Query: 295 DAANIEPVVLDINTTENK-------GIAIETEIDRDTTIKTSQFSSL 334
           D +NI  +  D NT   K       GIAI  +   +T IK+   SSL
Sbjct: 298 DISNITDLN-DWNTLYEKLKSANEFGIAICFD---ETAIKSYTVSSL 340


>gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131]
 gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131]
          Length = 880

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 194/515 (37%), Positives = 305/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIEVVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGTKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      K LLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKCLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae]
          Length = 877

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   E  AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAEATAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626]
 gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626]
          Length = 903

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/489 (37%), Positives = 281/489 (57%), Gaps = 23/489 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ + +Y+L+S RSS  I S+ + +            + S+  DKI  +  +      + 
Sbjct: 434 DVGVAAYLLESDRSSFTIPSLVEFYFGV---------ELSVGSDKIPAAAYE------AV 478

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
               L   L  KL  +K L ++E ++  ++ V++ ME  G+ +D   L + S E+  ++ 
Sbjct: 479 AARALKATLTKKLEDDKSLELFETIEMGLLPVLAAMERRGLFVDPAKLAEQSKELGADIA 538

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDN 665
           S  E I++ +GE FNL SP QL  +LF  L  P+    KT++G + T A+ L  +     
Sbjct: 539 SRVERIHEAAGETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGFYSTNAKVLSDL-ADTY 597

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            I+ ++LE+R+ +KIKSTY D+LP  I +   R+HT ++     TGRL+S +PNLQNIP 
Sbjct: 598 QIVADVLEYRERAKIKSTYLDALPALI-RGDHRIHTTFNQTVAATGRLSSSDPNLQNIPT 656

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +++LG ++R AF  P     ++ DYSQIELR+LAH++    L   F++  D H   A+  
Sbjct: 657 RSELGHRVRTAFTVPSGHVFLACDYSQIELRLLAHLSGDEHLIAAFQSGADFHAATASRT 716

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FGV +E+V+P++R  AK +NF I+YG   + LAT L+IPR+EA D I RYF  +PG+  Y
Sbjct: 717 FGVPVEEVTPELRSRAKAVNFGIVYGQQAYGLATSLKIPRAEAQDMIDRYFAAYPGVRAY 776

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++++     + GY  T++GR+ H  E       +    ER A+N P+QGSAADI + AMI
Sbjct: 777 LDESVRIAHEKGYAVTMYGRKRHIREFGQHNRQLIAFGERTAMNHPMQGSAADIIKIAMI 836

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V K L     A K++LQIHDEL  EVP +EI   S+++  +ME+     + L+VPL  +
Sbjct: 837 RVEKRLRKEGCAAKLILQIHDELDLEVPNDEIEAVSRLVKETMEEV----VELKVPLIAD 892

Query: 966 IKVSNNWQE 974
           +    NW E
Sbjct: 893 VSYGPNWAE 901



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 152/292 (52%), Gaps = 10/292 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +K   + ++DG+S ++RAF+A        DG P  A+ GF NM  K++++ R   +    
Sbjct: 13  KKRKTIAVIDGNSLMHRAFHAIRQPMSAPDGTPTGALFGFFNMFIKMIESFRPNGVI--- 69

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              FD      R ++ P YKA RP + + L  Q P+V+       IP  E++G+E DDI+
Sbjct: 70  -CAFDKGKPQVRIDMLPQYKAQRPPMDDALHVQFPIVKTLLGVLDIPVCELEGWEGDDIL 128

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDIEHVIKKW--GIPP 176
            T     E+ G+ + + + D+D+ QL +    +  T   V +  I     ++    GI P
Sbjct: 129 GTLARRGEEAGYEMLLFTGDRDMYQLSTENVKIVSTRKGVSDVSIMTPESVEDLYAGITP 188

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + +     L GDS DNIPG+PGIG K AA L+ EYG+L+ +L +A  +K  K  EN+  +
Sbjct: 189 KLVPDFYGLKGDSSDNIPGVPGIGPKKAAQLIVEYGSLDEVLAHADEVK-GKMGENLRTH 247

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            E A LSRK+  +RTD PI I L        +  ++++    L FT +  R+
Sbjct: 248 KEDALLSRKVATIRTDAPIDINLADAQFPTFDPNKVVAAFSKLGFTGMTGRL 299


>gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
          Length = 888

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/490 (37%), Positives = 291/490 (59%), Gaps = 10/490 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI L  YVL+     + +  +++K+L    +E  K          I D+      ++ + 
Sbjct: 404 DIYLGGYVLNPSDERYSLEVMSKKYLDIDLEE-EKGEAVQQSFLDIEDNNKYNMQMKKAK 462

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            I  L  + + K+  E++  +Y+ ++  ++ V+  ME+ G ++D + L+++  +  K + 
Sbjct: 463 SIYSLAGIFKEKIKEEEMEDLYQNIEHKLMYVLGDMELEGFKVDLNTLEELGVDFDKRVE 522

Query: 608 SLEENIYDLSGEK--FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
            L  NI + +GE   FN++S KQLG +LF K+  P+  KTKTG + T  + LE++    +
Sbjct: 523 DLTRNIREAAGEDEDFNVNSTKQLGHVLFDKMGLPALKKTKTG-YSTNIEVLEKLR-DHH 580

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           PII  I++ RQ+SK+ STY   L + I+K T ++H+ ++   T TGR++S  PNLQNIP+
Sbjct: 581 PIIPMIIDLRQISKLNSTYVKGLVSLIDKDTNKIHSTFNQTITTTGRISSSNPNLQNIPV 640

Query: 726 KTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +T+ G+ IR+ FIS      L+ ADYSQIELR+LAHI+K   L   F+N+ DIH   A+E
Sbjct: 641 RTEEGRIIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKNNEDIHTRTASE 700

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F V I++V+ +MR  AK +NF I+YGIS F LA  L I R +A +YI  Y  ++PG+ +
Sbjct: 701 VFNVPIDEVTSEMRSSAKAVNFGIVYGISDFGLAKGLSIARKDAKEYIDTYLSKYPGVCK 760

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E      ++ GYV T+F RR + +EI S   ++R+  ER A+N PIQGSAADI + AM
Sbjct: 761 YMEDIVVTAKEQGYVTTMFNRRRYINEIYSKNFNVRSFGERTALNTPIQGSAADIIKLAM 820

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           ++V   L   KL  K++LQ+HDEL+ + P EE+     ++   ME      +++  PLK 
Sbjct: 821 VNVQNELNKRKLKAKLILQVHDELIIDTPMEEVEEVKALLKDKMENV----VDMSCPLKA 876

Query: 965 NIKVSNNWQE 974
           +I V   W E
Sbjct: 877 DISVGKTWFE 886



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 161/293 (54%), Gaps = 20/293 (6%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++D  S IY+ F+   P+ S K  G+  NA+ GF N++ KL+ + +     ++    F
Sbjct: 5   LVIIDAYSIIYKCFFGVRPMHSPK--GISTNAVYGFLNIILKLISDEK----PNYLYAAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR++ Y DYKA R  +PE L  Q+P +     A  I ++++  +EADDII + +
Sbjct: 59  DKGHKNFRHDKYADYKAGRQSMPEELREQIPYIERLLDAANIISLKVDDYEADDIIGSVS 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVC 181
            +A+KEG    +I+ D+D  QLVS  T  LY       I++   +++ +K+ + P++M+ 
Sbjct: 119 EVADKEGIDTVVITGDRDSFQLVSEHTKILYSKRGISDIEVINEDYLKEKYNLTPKQMID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+AL GD  DNIPG+ G+G KTA  LL++Y +L+ +  +   IK  K +E ++   + A 
Sbjct: 179 LKALMGDKSDNIPGVKGVGEKTALNLLEKYSDLDGVYEHIEEIKG-KLQEKLINDKDNAF 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN----GPRLISFLKALEFTKLINRVAT 290
           LS+ L  +  ++ I + L     E+CN        IS L+ L+   +I ++  
Sbjct: 238 LSKDLGTIEVNMDIDLDLN----EECNFNFENEEFISILRELDLKSIIKKLGV 286


>gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA]
 gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA]
          Length = 877

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFP I  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPDIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL EYG+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEYGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16]
          Length = 893

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 289/991 (29%), Positives = 464/991 (46%), Gaps = 126/991 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y      PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMGAKNKPLTNVK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E+A LS++L  L         ++      C  P     LK  +  K    ++T  D +
Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLE 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +   P++L     EN  +   T    D   K S+   L       N E  P   FLERL
Sbjct: 292 NSPT-PLIL-----ENAPLLDNTPAS-DNAPKKSRMIVLE------NPE--PLSAFLERL 336

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K      N   + ++V  K+                            K +A+A    D
Sbjct: 337 KK-----TNARIFMRLVLDKE---------------------------KKVLALAFLLED 364

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK-YDKL 474
           Q      + E +F   S+   Q++        +IL         +H   IGH++K     
Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNAFS------QIL---------QHAQIIGHDLKPLLSF 408

Query: 475 VLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIPI 530
           +  +Y +S+     +D  +++++ +  +   D              E+LK   ++  IP 
Sbjct: 409 LKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEEWIPH 454

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYERLDKPMIDVVSQME 584
           +KI D + +  A +   + ++L  L R     EK      LL +   ++ P + V+  ME
Sbjct: 455 EKIKDFKTKSKAGKLEQLDMELNALKRLCEYFEKGGLEEGLLALAREVETPFVKVLMGME 514

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G +ID    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P   K
Sbjct: 515 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKN-K 573

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           + +   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT + 
Sbjct: 574 SHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFI 627

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAK 763
              T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH ++
Sbjct: 628 QTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQ 687

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L I
Sbjct: 688 DKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNI 744

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           P +EA  Y + YF RFP I +Y+ + K  + +     T+ GR   +D        I+   
Sbjct: 745 PLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGVNDYIKGNY 803

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
            R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q 
Sbjct: 804 LREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALELQQE 862

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   +     P   LRVPL+ +  ++  W E
Sbjct: 863 IQRILNDEVYP---LRVPLETSAFIAKRWNE 890


>gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
 gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
          Length = 880

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 194/530 (36%), Positives = 311/530 (58%), Gaps = 20/530 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           S  +K+ E+    KI  ++K D ++L   G+++ G   D+ L +Y++D  +   D+ S+A
Sbjct: 359 SAFRKWLEDGDLPKISADLKRDSILLDHQGLTLAGVTFDVGLAAYLVDVEKIK-DLTSLA 417

Query: 510 QK---WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
                 +     E++  K  K ++P     + ++ +H  +  +++ Q    L  +L    
Sbjct: 418 TYLDLGIQVQLDEVVYGKGVKQALP----ENERLAQHLADKVSLLDQAVAPLTQQLDDLG 473

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +  +Y+ ++ P+  V++ ME  G+ +D   L Q++  +   L  LE  I  L+G+ FN +
Sbjct: 474 MTQLYQDMEFPLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLAGQAFNPN 533

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF +L  P   KTKTG + T A  LE++    +PI+  +L +RQL+K++ TY
Sbjct: 534 SPKQLGEILFERLGLPVIKKTKTG-YSTAADVLEKLKDA-HPIVAALLTYRQLAKLQGTY 591

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743
              LP  I +   ++HT +    T TGRL+S +PNLQNIPI+ + G+KIR+AF+ S P  
Sbjct: 592 LAGLPKFI-QADGKIHTRFVQTLTQTGRLSSADPNLQNIPIRMEEGRKIRQAFVPSEPGW 650

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802
           +L  ADYSQIELR+LAHI+    + Q F    DIH   A  +FG+   E V+  MRR AK
Sbjct: 651 QLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHAATARRVFGLAEDEAVNSDMRRQAK 710

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF I+YGIS + L+  L +PR EA  +I RY   +PGI  ++++     +++GYV T+
Sbjct: 711 AVNFGIVYGISDYGLSQNLDMPRKEAKAFIDRYLAEYPGISTFMQEIVAQAKKDGYVSTL 770

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           +GRR    +I S   ++R+  ER A+N PIQG+AADI + AM+++ +++    L  ++LL
Sbjct: 771 WGRRRALPDIYSSNFNLRSFAERTAMNTPIQGTAADIIKVAMVALDQAIRQRDLQARLLL 830

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           Q+HDEL+ E P+EEI    +++   ME A    ++L VPLKV     +NW
Sbjct: 831 QVHDELILEAPQEEIAILEELVPEVMEGA----VSLSVPLKVEAASGSNW 876



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 151/291 (51%), Gaps = 11/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +  + L+DGSS  YRAF++   + R  +  GL  NA+  F  ML  +L   +     +H 
Sbjct: 3   QRKILLIDGSSLAYRAFFSILDIERFKNKAGLHTNALFSFNRMLDGVLDQFKP----THV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR E YP+YKA R K P     QLP  R+   A+GI   E+  +EADDI+
Sbjct: 59  LVAFDKSGHTFRTEQYPEYKAGRQKTPGEFREQLPYFRVLLDAYGIKYYELLHYEADDIL 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T    A+ +   V I+S DKDL QL S    +Y T K     E      +  K+ + P+
Sbjct: 119 GTLAKAADPDD-QVMILSGDKDLTQLASDQVTVYITKKGVSELEPYTPASIWDKYQLTPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L+ L GDS DN PGI  +G KTA  LL ++G +E +     ++K  K +ENI+   
Sbjct: 178 QIIDLKGLMGDSSDNYPGIERVGEKTALKLLHQFGTVEGLYQGLDQLKPSKMKENIIRDE 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             ARLS+ L  +  D P+ I L+  +L   +  +L  F   ++F   + ++
Sbjct: 238 ANARLSKSLARIVQDAPLEITLDDCLLGQRDLAQLSEFYVQMDFRSFLAQL 288


>gi|332201961|gb|EGJ16030.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317]
          Length = 877

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521
           ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA    Q +L        
Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K +IP       +  EH      V+++   +L  KL     L +   +++P+  V++
Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P 
Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +       I+K IL++RQ++KI+STY   L + I     ++HT
Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIALIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAH
Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+K   L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+ 
Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +I
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+  
Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME+A    I L VPL  +      W E
Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH
Sbjct: 6   LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P
Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++  
Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E A LS+ L  + T  PI I LE L+    +   L  F   + F +L
Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286


>gi|332523957|ref|ZP_08400209.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
 gi|332315221|gb|EGJ28206.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
          Length = 887

 Score =  331 bits (848), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 204/516 (39%), Positives = 309/516 (59%), Gaps = 19/516 (3%)

Query: 467 HNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL-- 521
           ++ K  K++L+  GI +     D  L +Y+L S    +++A+IA+    +S    E +  
Sbjct: 381 YDFKRAKVLLNHLGIEIPEAAFDARLANYLL-SNVDDNELATIARLHTSISLESDEAIYG 439

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K + P   +  S    H      V+     ++  KL       +Y +++ P+ +V++
Sbjct: 440 KGVKRAFPAKDLLFS----HLARKVAVLAASKPVMLEKLADNGQSDLYYKIELPLANVLA 495

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLL-SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           +MEI GI++++  L ++ AE ++N++ +L + IYDL+GE+FN++SPKQLG ILF K++ P
Sbjct: 496 KMEIAGIKVNKQTLMEM-AEQNRNVIDALTQEIYDLAGEEFNINSPKQLGSILFEKMQLP 554

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
                KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     ++H
Sbjct: 555 LTMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYLIGLQDYI-MEDGKIH 613

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T Y    T TGRL+S +PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LA
Sbjct: 614 TRYVQDLTQTGRLSSTDPNLQNIPIRMEQGRLIRKAFTPSSDDSVLLSSDYSQIELRVLA 673

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLA 818
           HI+    L   F N+ DIH   A  +FG+  E  V+P  RR+AK +NF I+YGIS F L+
Sbjct: 674 HISGDEHLIAAFNNNADIHTATAMRVFGIEKETDVTPNDRRNAKAVNFGIVYGISDFGLS 733

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L I R +A DYI  YF R+PGI  Y++      +  GYVET+F RR    +INS   +
Sbjct: 734 NNLGISRKKARDYIDTYFERYPGIKAYMDSVVREAKDKGYVETLFKRRRELPDINSRNFN 793

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R+  ER AIN+PIQGSAADI + AMI++ K+L D     KMLLQ+HDE+V EVP +E+ 
Sbjct: 794 VRSFAERTAINSPIQGSAADILKIAMINLDKALADRAFKAKMLLQVHDEIVLEVPNQELV 853

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           T  Q++   ME A    ++L VPL+ +     +W E
Sbjct: 854 TVRQLVKEIMEDA----VDLAVPLRADENSGQSWYE 885



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 162/295 (54%), Gaps = 17/295 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     R   GL  NAI GF  ML  +++  +  
Sbjct: 7   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFRNQSGLHTNAIYGFHLMLDHMMKRVQ-- 62

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A G+P  ++  +
Sbjct: 63  --PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGVPFYDLANY 120

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++ 
Sbjct: 121 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLK 180

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N    K  K 
Sbjct: 181 EKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEGIYANIDHFKASKM 240

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           +EN++   E A LS+ L  + TD PITI LE LI +  N   L +F   + F +L
Sbjct: 241 KENLINDKEQAFLSKTLATINTDAPITIGLEDLIYQGPNVDALAAFYDEMGFVQL 295


>gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
 gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
          Length = 881

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 208/532 (39%), Positives = 312/532 (58%), Gaps = 25/532 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQ 510
            K+F E    LK+ ++ K  K++L    I+++   F D  L  Y+L S    ++I++IA 
Sbjct: 363 FKEFLEKTP-LKV-YDFKRAKVLLSHLDITLQKPAF-DSRLAKYLL-STVEDNEISTIAS 418

Query: 511 KW--LSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +  ++    E++  K  K +IP      + + EH      V+L     +  +L     L
Sbjct: 419 LYSQIALPLDEVVYGKGAKKAIP----EKTALLEHLARKVAVLLDTEEPMVEQLQAHDQL 474

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +   +++P+  V+++MEI GI++++  L+ +  E    L  L + IY+L+GE+FN++SP
Sbjct: 475 DLLYDMEQPLAAVLAKMEIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEFNINSP 534

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KL  P     KT    +TA D+ +      PI+  ILE+RQ++KI+STY  
Sbjct: 535 KQLGVILFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVI 594

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-L 745
            L + I +   ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L
Sbjct: 595 GLQDWILE-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEEENSVL 653

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK---VSPQMRRHAK 802
           +S+DYSQIELR+LAHI+    L   F++  DIH   A  +F  NIEK   V+P  RR+AK
Sbjct: 654 LSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVF--NIEKPEDVTPNDRRNAK 711

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF ++YGIS F L+  L I R EA  YI+ YF R+PGI +Y+E+     R  GYVET+
Sbjct: 712 AVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETL 771

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           F RR    +INS   ++R   ER AIN+PIQGSAADI + AMI + ++LE     TKMLL
Sbjct: 772 FKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLL 831

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q+HDE+V +VP +E+    +++  +ME A    I L VPL+ +      W E
Sbjct: 832 QVHDEIVLQVPSDELAAIKELVKETMESA----IELAVPLEADENEGKTWYE 879



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/319 (36%), Positives = 164/319 (51%), Gaps = 17/319 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A    + R    +GL  NA+ GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYHQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI+S DKDL+QL    T +  + K     E+    ++ +K
Sbjct: 117 DDIIGTLDKMAEATSVPFEVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLKEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+L+ I  +   +K  K +E
Sbjct: 177 MGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEYGSLDGIYEHIDEMKASKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   E A LS+ L  + T+ PI I L+ +     +   L  F + + F +L   +   
Sbjct: 237 NLINDKEQAYLSKTLATIDTNAPIEIGLDDITYSGPHLENLAKFYEEMGFKQLRQAL--- 293

Query: 292 YDCDAANIEPVVLDINTTE 310
            D       PV +D    E
Sbjct: 294 -DLSGEEAAPVAIDYTEVE 311


>gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30]
          Length = 893

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 280/987 (28%), Positives = 457/987 (46%), Gaps = 118/987 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYA----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y      PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMGAKNKPLTNVK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDFAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E+A LS++L  L         ++      C  P     LK     K    ++T  D +
Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFSSCAFPSENPLLKIKNELKEYGFISTLRDLE 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +   P++LD NT      A+E     D   K S+   L +          P   FLE+L
Sbjct: 292 NSPT-PLILD-NTP-----ALENTPLLDNAPKKSRMIVLENTA--------PLSAFLEKL 336

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K      N   + ++   K+                            K +A+A    D
Sbjct: 337 KK-----TNARIFMRLALDKE---------------------------KKVLALAFLLQD 364

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473
           Q      + E +F   S+   Q++                FF+  +H   IGH++K    
Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLLS 407

Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIA---SIAQKWLSYTRKEILKSRKSSI 528
            +  +Y +S+     +D  +++++ +  +   D      + ++W+ + + +  K++    
Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWILHEKIKDFKTK---- 463

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                S ++  E      N + +L        + E L  +   ++ P + V+  ME  G 
Sbjct: 464 -----SKAEKSEQLDRELNALKRLCEYFEKGGLEEGLFALAREVETPFMKVLMGMEFQGF 518

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P     K  
Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELP-----KNK 573

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  ++L +I    +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +    T
Sbjct: 574 SHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFIQTGT 631

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH ++   L
Sbjct: 632 ATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDL 691

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +E
Sbjct: 692 MDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNE 748

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y + YF RFP I +Y+ + K  + +     T+ GR   +D        I+    R  
Sbjct: 749 AKSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYIKGNYLREG 807

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q I   
Sbjct: 808 VNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALELQQEIQRI 866

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           +     P   LRVPL+ +  ++  W E
Sbjct: 867 LNDEVYP---LRVPLETSAFIAKRWNE 890


>gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
 gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
          Length = 875

 Score =  330 bits (847), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 188/499 (37%), Positives = 286/499 (57%), Gaps = 32/499 (6%)

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +SMR F D+ L  YVL+S  S +   ++   +               +P       + ++
Sbjct: 402 MSMRAF-DLGLAGYVLNSSVSEYSYDALLDAYCG-----------GVLP-------EAKD 442

Query: 541 HAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            A   +       +L++P    L  ++    Y  +D P++ V++ +E TG  +D D L +
Sbjct: 443 EAGSAAAQAAAARMLVKPLTDALGRDESKRAYFDIDLPLVAVLAIVERTGAAVDCDRLAE 502

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + A     L  L   I +++GE+FNL SPKQLG ILF  L   +  K + G + T A  L
Sbjct: 503 LGATTQAELDELRARIIEIAGEEFNLDSPKQLGHILFEVLGLRTLKKNQRG-YSTDAAVL 561

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           ++++  D+ +   +L +R+L+KIKSTY D+LP  +     RVHT ++   T TGRL+S E
Sbjct: 562 KELS-NDHEMPALVLRYRELAKIKSTYIDALP-RMRADDGRVHTCFNETVTTTGRLSSSE 619

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSL 775
           PNLQNIP++T+ G++IR  F+ P  K  K +SADYSQIELR+LAH++    L   F +  
Sbjct: 620 PNLQNIPVRTEFGRQIRECFV-PLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGA 678

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D H   A+ +FG+ +E VSP++R  AK +NF I+YG   F L+  L IP  EA + I+RY
Sbjct: 679 DFHAATASRVFGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERY 738

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +PG+  Y+++T    ++ GY ET+FGR+ H  E+ +  ++ R   ER A+N P+QGS
Sbjct: 739 FEAYPGVRAYLDRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGS 798

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM  V + + +     K+LLQ+HDEL F VPE EI   S I+   ME      
Sbjct: 799 AADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHI---- 854

Query: 956 INLRVPLKVNIKVSNNWQE 974
           ++LRVPL V++  ++NW E
Sbjct: 855 VDLRVPLDVDVSYADNWAE 873



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 15/287 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI--FD 66
           ++DG+S ++RA++A P      DG P NA+ GF  ML K +       IAS  A+I  FD
Sbjct: 7   VIDGNSLMHRAYHAVPQTMNAPDGRPTNAVFGFIAMLLKFID------IASPDALICAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR E    YK+ RP + + L  Q P++    +A  +P + I+G+E DD++ T   
Sbjct: 61  AGRPAFRMEALEQYKSQRPPMDDDLKVQFPIIEELLEAMNVPVVRIKGWEGDDVLGTIAA 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181
             E+ G+   +++ DKD  QL +  T +  T K+   D+       V++++G+ P++ + 
Sbjct: 121 RDEELGYETLLVTGDKDAYQLATDMTRIV-TTKKGITDVAIYGPAEVLERYGVRPDQFID 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L GDS DNIPG+PGIG KTAA LLQ YG+LE I  +   +K K+ +E I++  + A 
Sbjct: 180 FLGLKGDSSDNIPGVPGIGDKTAAKLLQTYGSLEGIYEHVDDLKGKQ-KEKIVDNKDMAF 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           LSR +  +  D+   + LE       +  ++    K ++F   + RV
Sbjct: 239 LSRDVATIVRDLDFPLDLEACSFPSFDSEKVTEAFKGVQFNAHLGRV 285


>gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1]
 gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1]
          Length = 986

 Score =  330 bits (846), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 173/421 (41%), Positives = 263/421 (62%), Gaps = 16/421 (3%)

Query: 563 EKLLHVYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
           E+L+   E LD          P+I  +  ME  GI + ++ L     ++   +  LE+ I
Sbjct: 571 ERLMKKLEELDMKELFYTIEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEI 630

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
           Y  +GE FN++SPKQLG+ILF K++ P G KTKTG + T A  LE++   + P+++ IL+
Sbjct: 631 YGETGEHFNINSPKQLGEILFGKMELPYGKKTKTG-YSTAADVLEKL-APEYPVVQKILD 688

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           +RQL+K+KSTYAD L  +I +   R+H  ++   T TGRL+S EPNLQNIP++ +LG++I
Sbjct: 689 YRQLTKLKSTYADGLAGYI-REDGRIHGTFNQTITATGRLSSTEPNLQNIPVRMELGREI 747

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           RR F+       + ADYSQIELR+LAH++    L + +  + DIH + A+E+F V +E+V
Sbjct: 748 RRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRKAEDIHAITASEVFHVPLEEV 807

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +P  RR+AK +NF I+YGIS F L+  L I R EA +YI RYF  +P + +++++     
Sbjct: 808 TPLQRRNAKAVNFGIVYGISAFGLSEDLSITRKEALEYINRYFETYPDVKKFLDRLVEEG 867

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           ++ GYV T+F RR    E++S     R+  ER A+N+PIQG+AADI + AM  V   L  
Sbjct: 868 KEKGYVTTMFKRRRPVPELSSKNFMQRSFGERVAMNSPIQGTAADIIKIAMNRVDNRLRR 927

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             L +K++LQ+HDEL+ E  +EE+     I+   M+ A     +LRV L++++K  N+W 
Sbjct: 928 EGLKSKIVLQVHDELLIEAKKEELKRVQTILSEEMKHAA----DLRVALEIDMKTGNSWF 983

Query: 974 E 974
           E
Sbjct: 984 E 984



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 166/297 (55%), Gaps = 17/297 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+    GL  NA+ GF N++++++++ +    A   AV FD
Sbjct: 4   VVLIDGHSILNRAFYGVPELTNSR-GLHTNAVYGFLNIMFRVIEDEK----ADCLAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y  YK  R  +PE L  Q+P+++    A GIP + + G+EADD++ T   
Sbjct: 59  LKEPTFRHKMYEAYKGTRKPMPEELREQVPVIKEVLSAMGIPILSVPGYEADDVLGTIAG 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
               EG  V+I+S D+DL+QL         P T    T  ++    + V +++ + P++ 
Sbjct: 119 RCAAEGAEVSIVSGDRDLLQLADEHVKIRMPRTNRGGTEIKDFYPAD-VKEQYQVTPKEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+P IG KTA  L+  YG++EN   +   IK  + ++ + E+ + 
Sbjct: 178 IDVKALMGDASDNIPGVPSIGEKTATALITTYGSIENAYAHLDEIKPPRAQKALREHYDM 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A++S++L  + TD P+   +E   + +   P+    +  LEF  L+ R    +D +A
Sbjct: 238 AQMSKELATICTDCPVEFSMEEAKIGELYTPQAYELMSQLEFKSLLLR----FDANA 290


>gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 884

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 187/486 (38%), Positives = 283/486 (58%), Gaps = 23/486 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ LM+Y+LD  R+++    + +++              S+P   I+   V    +    
Sbjct: 417 DVSLMAYLLDPTRTNYGYLYLTERF--------------SVP--SIATGSVDVECVSMVK 460

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L +       L  E L  +Y  ++ P+I  +  ME  GI ID   L++ + +    L 
Sbjct: 461 ALLAMDDAAVKALQDESLWDLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELE 520

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           ++++ IY+L+GE FN++SPKQLG ILF K+  P   KTKTG + T A+ L+ +   ++PI
Sbjct: 521 AVQQEIYELAGETFNINSPKQLGIILFEKMNLPVIKKTKTG-YSTDAEVLDMLRH-ESPI 578

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ IL +R ++K+ STY + L   IN  T R+HT ++   T TGRL+S +PNLQNIP++T
Sbjct: 579 VEKILAYRSVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 638

Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           + G++IR  F        L+SADYSQIELRILAH++    L + F +  DIHR  AAE+ 
Sbjct: 639 EKGREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVL 698

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G + ++V+ + R HAK +NF IIYGIS F L+  L I R EA +YI+ YF R+P + EY+
Sbjct: 699 GKSQDEVTSEERSHAKAVNFGIIYGISDFGLSRDLGITRQEAKNYIELYFSRYPKVKEYM 758

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           +       + G V T+FGR     +INS   + R+  ER A+N PIQG+AADI + AM  
Sbjct: 759 DNMVTEAHETGKVRTMFGRMRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNK 818

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V   LE+    +++LLQ+HDELV EV  EE+     ++  +ME      + L VPL V++
Sbjct: 819 VESILEEKTFKSRLLLQVHDELVLEVVNEELDAIQTLLKETMESI----VELHVPLIVDV 874

Query: 967 KVSNNW 972
             + NW
Sbjct: 875 HNAENW 880



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 177/298 (59%), Gaps = 10/298 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +  + + IA    V FD
Sbjct: 14  LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEIKPDYIA----VAFD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +G+E DDI+ + + 
Sbjct: 69  KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGYEGDDILGSLSK 128

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                  AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++ +
Sbjct: 129 KFGSSDLAVQIITGDRDNLQLVTDYSHVFLTKKGISDMLEVTLDNMTELYGYGPDKVIEM 188

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GDS DNIPG+PG+G KTA  L+ EYG+LE++  N   I  KK +E ++E  E A L
Sbjct: 189 KALMGDSSDNIPGVPGVGEKTALKLINEYGDLESVYENIDNISGKKLKERLVENKELAFL 248

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           SR+L  ++TD+ ++  L+  + ++ +   +    + L FTKL  R+A+    +  + E
Sbjct: 249 SRQLATIKTDMDLSYTLDQFV-QNFHLGEVKPMFETLGFTKLTPRLASVMGSEGGDAE 305


>gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
 gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
          Length = 879

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 202/546 (36%), Positives = 318/546 (58%), Gaps = 35/546 (6%)

Query: 447 KEILSYL---KKFFENEHFL--------KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSY 494
           KE  +Y+   ++FF NE  +        K  ++ K    +  R G+ + G   D+ ++SY
Sbjct: 345 KEGTAYIFSEEQFFTNEFVVDYLQSEISKTVYDFKKILFIAKRNGVDINGEVFDVKIVSY 404

Query: 495 VLDSGRSSHDIASIAQKWLS---YTRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           +LD    + +I  I   +L     + +EI  K  K ++P  ++ +  + E A      I 
Sbjct: 405 LLDVNAKT-EIDKIVFNYLGKIMSSDEEIYGKGAKRTLPAQEVINPYIAEIA----ESIA 459

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            +  L+  KL  E +  +Y+ ++  +  V++ ME  GI + +  L+++SAE  + + +LE
Sbjct: 460 LIKPLMEEKLAEENMTDLYKDIEIKVAKVLANMEYEGIHVSKKALEEMSAEFDERIKTLE 519

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
            +IY L+G +FN++SPKQLG +LF  L  P   KTKTG + T  + LEQ+    + II  
Sbjct: 520 ASIYTLAGSEFNIASPKQLGVVLFEDLGLPPIKKTKTG-YSTAVEVLEQLQHS-HEIIPL 577

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           I+E+R ++K+ STYA  L   I  R  ++HT Y      TGRL+S+ PNLQNIP + + G
Sbjct: 578 IMEYRTITKLNSTYAKGLVKDIT-REGKIHTRYEQTLAQTGRLSSVNPNLQNIPTRIEEG 636

Query: 731 QKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           +KIR+AF+     ++I S DYSQIELR+LAHIA+   +   F++ +DIH   A+++ GV+
Sbjct: 637 KKIRKAFVPASDDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVS 696

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +++V+  MRR AK +NF I+YGIS F L+  L I R  A ++I +Y   F G+ +Y+   
Sbjct: 697 LDEVTSSMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFKGVDKYMTDI 756

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
            +F R++GYVET+F RR    +IN+    + N+N R A+N+PIQG+AADI + AM++V +
Sbjct: 757 VDFAREHGYVETLFNRRRALPDINAKNKIVANLNARIAMNSPIQGTAADIIKIAMVNVFE 816

Query: 910 SLEDHKLATKMLLQIHDELVFEVP---EEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
            LE   +  K+LLQ+HDEL+F+V    EEE T     ++  ME+A     NL V LK   
Sbjct: 817 YLEKTNVDAKLLLQVHDELIFDVNKDIEEEFTKE---MIKIMEEAA----NLDVQLKAEA 869

Query: 967 KVSNNW 972
               +W
Sbjct: 870 SSGASW 875



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/298 (40%), Positives = 165/298 (55%), Gaps = 13/298 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG+S  YRAFYA P L  K  GL  N++ GF  ML K+L ++       +  V 
Sbjct: 2   DKIILIDGNSLSYRAFYAMPALKNKK-GLYTNSVYGFTLMLEKILADTN----PKYALVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y  YK  R K P  L+ Q   VR    ++GI   E   +EADDII +Y
Sbjct: 57  FDKGKQTFRHQSYEAYKGTRDKTPSELVEQFGYVRELLDSYGIKYEEHFDYEADDIIGSY 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKM 179
             IAEKEG  V I++ DKDL QL S    +Y T K    DI     E + +K+G+ P ++
Sbjct: 117 AKIAEKEGLEVIIVTGDKDLTQLASENITIYYT-KRGVTDIDYYTPEFIAEKYGLTPGQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V ++ L GD  DNIPGI G+G KTA  LL EY  +EN+L N   I  KK +E + E  E 
Sbjct: 176 VDMKGLMGDKSDNIPGIAGVGEKTAIKLLTEYKTVENVLENIDNISGKKLKERLTEGRED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPR-LISFLKALEFTKLINRVATTYDCD 295
           A LS+KL  + T+VP+   LE L   E+    R L   L+ + F K +++  +T + D
Sbjct: 236 ALLSKKLATIYTEVPVDNKLEDLTYSENVELKRELFEKLEFVSFLKKLSQETSTEEVD 293


>gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328]
 gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328]
          Length = 875

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 313/529 (59%), Gaps = 12/529 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506
           E++   K+ FE++   K+  +IK     L RYGI +   ++D++++ Y+LD  ++S+ + 
Sbjct: 351 ELVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSME 410

Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
               K + Y  K   +I    KS   I +  + ++  + ++      +L+  +  ++  E
Sbjct: 411 RSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEKI-SEIEEE 469

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            ++H+Y  ++ P+I V+  ME TG+ + ++ L ++       + S+E+++ +L G+K N+
Sbjct: 470 DMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKINI 529

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +S KQL ++LF  L+ P   K KTG   +T Q++ +   G + II  IL +R ++K+K+T
Sbjct: 530 NSSKQLAEVLFEDLELPVIKKNKTGP--STDQEVLEALSGRHEIIDYILRYRTITKLKTT 587

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D + + I K+  ++HT +      TGR++S  PNLQNIPI+T+ G+ IR+AF+     
Sbjct: 588 YIDGMVDLI-KKDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGN 646

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+ ADYSQIELR+LA +A    +   F++  DIHR  A+E+F V+ +KV+   R +AK 
Sbjct: 647 MLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGI  + L+  L I R EA +YI+ Y   + GI +Y+E      ++ GYVETI 
Sbjct: 707 VNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIM 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  E+ S   ++R+  ER A+N PIQGSAADI + AM+  +  L + KL  K++LQ
Sbjct: 767 NRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+ + P++E     +I+   M  A    ++L+V +K+++  ++NW
Sbjct: 827 VHDELIVDCPKDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADNW 871



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 166/288 (57%), Gaps = 12/288 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            ++DGSS ++R FYA   L+ K DG+  N + GF NM + ++     + +     V FD 
Sbjct: 6   LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMGKINPDLVV----VCFDR 60

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              TFR+E Y +YK NR + PE L+ Q  +++   +A G+  I+++G+EADDI  T    
Sbjct: 61  KEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQ 120

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCLQ 183
           A  + + V +++ DKD +QL+   T +  T   + E KI D++ + +++GI P++M+ L+
Sbjct: 121 ASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDVLKEEYGITPKQMIDLK 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD  DNIPGI G+G KTA   +Q+YG++E +  +   I  KK ++ +++  + A LS
Sbjct: 181 GLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLS 240

Query: 244 RKLVMLRTDVP---ITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R+L  + TDVP   +   +E   +++ +   LI  L  LEF   I ++
Sbjct: 241 RELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKL 288


>gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10]
          Length = 986

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 168/403 (41%), Positives = 258/403 (64%), Gaps = 7/403 (1%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+I  +  ME  GI + ++ L     ++   +  LE+ IY  +GE FN++SPKQLG+
Sbjct: 589 IEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYGETGEHFNINSPKQLGE 648

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K++ P G KTKTG + T A  LE++   + P+++ IL++RQL+K+KSTYAD L  +
Sbjct: 649 ILFGKMELPYGKKTKTG-YSTAADVLEKL-APEYPVVQKILDYRQLTKLKSTYADGLAGY 706

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           I +   R+H  ++   T TGRL+S EPNLQNIP++ +LG++IRR F+       + ADYS
Sbjct: 707 I-REDGRIHGTFNQTITATGRLSSTEPNLQNIPVRMELGREIRRVFVPEEGSVFVDADYS 765

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAH++    L + +  + DIH + A+E+F V +E+V+P  RR+AK +NF I+YG
Sbjct: 766 QIELRVLAHMSGDERLIEAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVYG 825

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           IS F L+  L I R EA +YI RYF  +P + +++++     ++ GYV T+F RR    E
Sbjct: 826 ISAFGLSEDLSITRKEALEYINRYFETYPDVKKFLDRLVEEGKEKGYVTTMFKRRRPVPE 885

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           ++S     R+  ER A+N+PIQG+AADI + AM  V   L    L +K++LQ+HDEL+ E
Sbjct: 886 LSSKNFMQRSFGERVAMNSPIQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIE 945

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +EE+     I+   M+ A     +LRV L++++K  N+W E
Sbjct: 946 AKKEELKRVQTILSEEMKHAA----DLRVALEIDMKTGNSWFE 984



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 166/297 (55%), Gaps = 17/297 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+    GL  NA+ GF N++++++++ +    A   AV FD
Sbjct: 4   VVLIDGHSILNRAFYGVPELTNSR-GLHTNAVYGFLNIMFRVIEDEK----ADCLAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y  YK  R  +PE L  Q+P+++    A GIP + + G+EADD++ T   
Sbjct: 59  LKEPTFRHKMYEAYKGTRKPMPEELREQVPVIKEVLSAMGIPILSVPGYEADDVLGTIAG 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
               EG  V+I+S D+DL+QL         P T    T  ++    + V +++ + P++ 
Sbjct: 119 RCAAEGAEVSIVSGDRDLLQLADEHVKIRMPRTNRGGTEIKDFYPAD-VKEQYQVTPKEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+P IG KTA  L+  YG++EN   +   IK  + ++ + E+ + 
Sbjct: 178 IDVKALMGDASDNIPGVPSIGEKTATALITTYGSIENAYAHLDEIKPPRAQKALREHYDM 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A++S++L  + TD P+   +E   + +   P+    +  LEF  L+ R    +D +A
Sbjct: 238 AQMSKELATICTDCPVEFSMEEAKIGELYTPQAYELMSQLEFKSLLLR----FDANA 290


>gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4]
          Length = 877

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/419 (39%), Positives = 266/419 (63%), Gaps = 7/419 (1%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           L  +L  E +  +Y  ++ P+I  +  ME  GI + ++ L     ++ K +  LE+ I++
Sbjct: 464 LSERLAAEGMEDLYRNIELPLIYTLFHMEDEGIAVRREELTAYGGKLKKQIAVLEKEIWE 523

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           ++G++FN++SPKQLG+ILF K++   G KTKTG + T A  LE++   D P+I+ IL++R
Sbjct: 524 MTGQEFNINSPKQLGEILFEKMQIKGGKKTKTG-YSTAADVLEKL-APDYPVIQKILDYR 581

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           Q +K+ STYAD L  +I K   R+H+ ++   T TGR++S EPNLQNIPI+ +LG++IR+
Sbjct: 582 QYTKLNSTYADGLGTYI-KEDGRIHSRFNQTITATGRISSTEPNLQNIPIRMELGREIRK 640

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F+       + ADYSQIELR+LAH++    L + ++ + DIH + A+++F + + +V+P
Sbjct: 641 VFVPRNGFLFLDADYSQIELRVLAHMSGDERLIEAYKTAQDIHAITASQVFHIPLNEVTP 700

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             RR+AK +NF I+YGIS F L+  L I R EA +YI+RYF  +P +  +++      ++
Sbjct: 701 LQRRNAKAVNFGIVYGISAFGLSEDLSISRKEAMEYIERYFETYPQVKSFLDSLVAHAKE 760

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYV T+FGRR    E+ S     R+  ER A+N+PIQG+AADI + AMI V + L    
Sbjct: 761 QGYVTTMFGRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVDERLRREN 820

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L ++++LQ+HDEL+ E  E+E  T  +I+   M  A     +L+V L++++    NW E
Sbjct: 821 LRSRLILQVHDELLIETAEDEKETVMKILSEEMHHAA----SLKVELEIDMHGGKNWFE 875



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 163/289 (56%), Gaps = 11/289 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RAFY  P L+   +GL  NA+ GF N+L+K+L   +    A + AV FD
Sbjct: 4   LVLIDGHSILNRAFYGVPNLTNS-EGLHTNAVYGFLNILFKVLDEEK----ADYLAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++++  YK  R  +PE L  Q+PL++    A G+P +  +G+EADDI+ T   
Sbjct: 59  LKAPTFRHKMFDAYKGTRKPMPEELHEQVPLMKEVLTAMGVPILTKEGYEADDILGTIAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--TTCL----YDTVKEEKIDIEHVIKKWGIPPEKMV 180
             +K+G+ VTI+S D+DL+QL       CL      T +      E VI+++ + PE+ +
Sbjct: 119 REQKDGYEVTILSGDRDLLQLSDTHIRICLPKTSRGTTEVHNYYPEDVIREYQVTPEQFI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GD  DNIPG+P IG KTA  L+ +Y NLENI  +   +K  + ++ + E+ + A
Sbjct: 179 EVKALMGDQSDNIPGVPSIGEKTATNLIVQYQNLENIYTHLDEVKPPRAKKALEEHRDLA 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            LS KL  +  D PI   +    LE+   P    ++K LEF  +  R  
Sbjct: 239 ELSLKLARICVDAPIEFSMADAKLENLYTPEAYEYMKRLEFKSIAARFG 287


>gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
 gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
          Length = 875

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 187/499 (37%), Positives = 286/499 (57%), Gaps = 32/499 (6%)

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +SMR F D+ L  YVL+S  S +   ++   +               +P       + ++
Sbjct: 402 MSMRAF-DLGLAGYVLNSSVSEYSYDALLDAYCG-----------GVLP-------EAKD 442

Query: 541 HAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            A   +       +L++P    L  ++    Y  +D P++ V++ +E TG  +D D L +
Sbjct: 443 EAGSAAAQAAAARMLVKPLTDALGRDESKRAYFDIDLPLVAVLAIVERTGAAVDCDRLAE 502

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + A     L  L   I +++GE+FNL SPKQLG ILF  L   +  K + G + T A  L
Sbjct: 503 LGATTQAELDELRARIIEIAGEEFNLDSPKQLGHILFEVLGLRTLKKNQRG-YSTDAAVL 561

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           ++++  D+ +   +L +R+L+KIKSTY D+LP  +     RVHT ++   T TGRL+S E
Sbjct: 562 KELS-NDHEMPALVLRYRELAKIKSTYIDALP-RMRADDGRVHTCFNETVTTTGRLSSSE 619

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSL 775
           PNLQNIP++T+ G++IR  F+ P  K  K +SADYSQIELR+LAH++    L   F +  
Sbjct: 620 PNLQNIPVRTEFGRQIRECFV-PLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGA 678

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D H   A+ +FG+ +E V+P++R  AK +NF I+YG   F L+  L IP  EA + I+RY
Sbjct: 679 DFHAATASRVFGLPVEDVTPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERY 738

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +PG+  Y+++T    ++ GY ET+FGR+ H  E+ +  ++ R   ER A+N P+QGS
Sbjct: 739 FEAYPGVRAYLDRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGS 798

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM  V + + +     K+LLQ+HDEL F VPE EI   S I+   ME      
Sbjct: 799 AADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHI---- 854

Query: 956 INLRVPLKVNIKVSNNWQE 974
           ++LRVPL V++  ++NW E
Sbjct: 855 VDLRVPLDVDVSYADNWAE 873



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 15/287 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI--FD 66
           ++DG+S ++RA++A P      DG P NA+ GF  ML K +       IAS  A+I  FD
Sbjct: 7   VIDGNSLMHRAYHAVPQTMNAPDGRPTNAVFGFIAMLLKFID------IASPDALICAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR E    YK+ RP + + L  Q P++    +A  +P + I+G+E DD++ T   
Sbjct: 61  AGRPAFRMEALEQYKSQRPPMDDDLKVQFPIIEELLEAMNVPVVRIKGWEGDDVLGTIAA 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181
             E+ G+   +++ DKD  QL +  T +  T K+   D+       V++++G+ P++ + 
Sbjct: 121 RDEELGYETLLVTGDKDAYQLATDMTRIV-TTKKGITDVAIYGPAEVLERYGVRPDQFID 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L GDS DNIPG+PGIG KTAA LLQ YG+LE I  +   +K K+ +E I++  + A 
Sbjct: 180 FLGLKGDSSDNIPGVPGIGDKTAAKLLQTYGSLEGIYEHVDDLKGKQ-KEKIVDNKDMAF 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           LSR +  +  D+   + LE       +  ++    K ++F   + RV
Sbjct: 239 LSRDVATIVRDLDFPLDLEACSFPSFDSEKVTEAFKGVQFNAHLGRV 285


>gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
 gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
          Length = 880

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 194/515 (37%), Positives = 304/515 (59%), Gaps = 17/515 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521
           ++ K  K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      
Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K  K ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V++
Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +MEI GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P 
Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               KT    +TA D+ +      PI+  IL +RQ++K++STY   L ++I     ++HT
Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILAYRQITKLQSTYVIGLQDYI-LADGKIHT 607

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF  S     L+S+DYSQIELR+LAH
Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           I+    L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+ 
Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R +A  YI  YF R+P I  Y+E      +  GYVET+F RR    +INS   ++
Sbjct: 728 NLGITRKQAKTYIDTYFERYPRIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T 
Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +++  +ME A    ++L VPL V+     +W E
Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
 gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
          Length = 916

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/414 (41%), Positives = 269/414 (64%), Gaps = 9/414 (2%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           E+L  +  + + P+I V+S ME  GI+ID    K  S+E+ K L  +E++IY+ +GE+FN
Sbjct: 508 EELYDILIQNEMPLIPVLSLMERKGIKIDVSYFKNYSSELEKELAKIEKSIYEEAGEEFN 567

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLGDILF K+  PSG KTKTG + T    LE +      I + +L++R+L+K+K+
Sbjct: 568 INSPKQLGDILFVKMNLPSGKKTKTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKT 626

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LPN ++  + R+HT ++   T TGRL+S EPNLQNIP+KTD G KIR  F++   
Sbjct: 627 TYVDTLPNLVDSNS-RIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEG 685

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHA 801
           K L+S DYSQ+ELR+L  ++K   L + +    D+H + A  IF + + + V+ + R  A
Sbjct: 686 KVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIA 745

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K INFSIIYG + F LA +L+IP  +A++YIK+YF ++P +  + ++   F  ++GYV+T
Sbjct: 746 KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKT 805

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGR+ +   I+S   +I+   ER A+N  IQG+AA++ ++ M+ V+++L+D K    +L
Sbjct: 806 LFGRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYETLKD-KDDIALL 864

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKAC-LPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDEL+FEV E  +   S+I+   M+    L  +NL     +NI +  NW E
Sbjct: 865 LQVHDELIFEVEESSVEKYSEILADIMKNTVKLEDVNLN----ININIGKNWAE 914



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 150/313 (47%), Gaps = 22/313 (7%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++    KE    + A  FD  
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSII----KEFNPDYMAAAFDVK 59

Query: 69  AVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
             +  R EIY DYK+NR   PE L+ Q+P +     AF I    I+ +EADD++ +    
Sbjct: 60  RSSLKRTEIYSDYKSNRQSTPEDLVAQIPRIEEVLDAFNINRYRIESYEADDVLGSIAKK 119

Query: 128 AEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKEEKIDI----EHVIKKWGIPPEKMV 180
             K+   V I++ DKDL QLV        L    + EK  +    E V+   G+ PEK+ 
Sbjct: 120 IAKDDLEVIIVTGDKDLSQLVEKNITIALLGKGTEGEKFGMLRTAEDVVNYLGVVPEKIP 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-----RENILE 235
            L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K  +       +N+  
Sbjct: 180 DLFGLIGDKSDGIPGVTKIGEKKALAIFSKYDSLEKIYENIDDLKNIEGIGPSLIKNLTN 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             + A LSR+L  + T++ I I  E+L     +  +L    K LEF   I ++       
Sbjct: 240 EKDIAFLSRELAKIFTNLDIDIEEENLKYS-MDKEKLYELCKILEFKMFIKKLNLEEKTQ 298

Query: 296 AANIE--PVVLDI 306
            +N +  PV+L +
Sbjct: 299 TSNSDHKPVLLSL 311


>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 921

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/425 (39%), Positives = 260/425 (61%), Gaps = 2/425 (0%)

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           + L++  +L  ++  + L  +YE L+ P+  +++ ME  GI ID    +   +++   L 
Sbjct: 495 LALRMVEVLEARMRQDGLAELYESLELPLTPILADMERRGIAIDAAAFESFLSDVQGRLD 554

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           +L   +Y+ +G +FN+ S +QLGD+LF+ L+ PS  KTK GQ  T+   LE++  G +P+
Sbjct: 555 TLTAAVYEAAGREFNIRSAQQLGDVLFSTLELPSPRKTKGGQASTSQDTLEKL-AGRHPV 613

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           + ++LE+R+L K++STY D LP  ++    R+HT ++  +T TGRL+S  PNLQNIP++ 
Sbjct: 614 VDSVLEFRKLEKMRSTYLDPLPRLMDG-NGRIHTTFNQKATATGRLSSSNPNLQNIPVRG 672

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           DLG+++R  FI+ P   L+SADYSQ+ELR+LAH+++   L + F N  DIH   AA ++ 
Sbjct: 673 DLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGEDIHARTAALVYD 732

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           +  ++VSP  RR+AKTINF +IYG+   +L   L+I  SEA ++I RYF R  G+ E+ +
Sbjct: 733 LAPDQVSPDQRRNAKTINFGLIYGMGAQKLGQDLKISTSEAKEFIARYFSRLTGLKEFYD 792

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             +   ++ GYV T+ GRR    +I+SP      +  R AIN  IQGSAADI + AM++V
Sbjct: 793 SVEATAKRQGYVTTLGGRRRLLPDIHSPNGQAYALARRQAINTVIQGSAADIIKLAMLAV 852

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            +  +  +   ++LLQ+HDEL+ EVPE     A   +   M         L VPL V+  
Sbjct: 853 AEDEQLREHEARLLLQVHDELLLEVPEASARAAGARVADLMSSVKPGGEPLSVPLVVDWG 912

Query: 968 VSNNW 972
           V  NW
Sbjct: 913 VGKNW 917



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 152/287 (52%), Gaps = 11/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +FL+DGS+FIYR F+A   + R  DG P NA+     +L ++L+  R +    +F  + D
Sbjct: 14  VFLMDGSAFIYRGFFANRNMQRS-DGFPTNALVVVTRVLLRILREERPQ----YFLFVKD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                FR++I+P YKANR   PE L+ Q+ P+ R+ T A G+        EADD IA+  
Sbjct: 69  GKGKNFRHDIFPLYKANRDATPEDLVRQMQPIERMVT-ALGMNLEVSDHCEADDCIASLA 127

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVCLQ 183
               +E   V I+  DKDL Q + P   ++D   ++EK+       ++ G+ P +   +Q
Sbjct: 128 ARFSQE-RPVVIVGGDKDLKQCLGPNVYMWDPAFRDEKLLTAAQFTEESGLTPAQWPDVQ 186

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPG+PGIG KTAA + +   +LE+I  + + +  K  ++ + ++ +     
Sbjct: 187 ALVGDTSDNIPGVPGIGPKTAAKIFEICPSLEDIRDHFALLPPKI-QDKLRDHLDEMFTW 245

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           RKL  L  DV   + ++ L++   N  R     +  E   L   +A+
Sbjct: 246 RKLTTLSLDVCTAVEMDDLLVRPINAARCADLAEEFELHALRREMAS 292


>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 874

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 193/492 (39%), Positives = 290/492 (58%), Gaps = 27/492 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWL-SYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D+ L  Y+L    S  DIA  A  +L + T  E L S               + +A+  +
Sbjct: 403 DLELADYLLHPEESRRDIARAAFAFLGTATSAEGLSS---------------EAYAVREA 447

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            +  +L  ++  +L  + L+ +Y  ++ P++ V++ ME TG+ +D+  L++  A  ++ +
Sbjct: 448 LLGARLQPVMETELAAQGLMQLYRTVELPLVPVLAAMEQTGVYVDRAALERERAAATERI 507

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGD 664
            +L   I+ L+G +FN+SSPKQLG+ILF  L   SG   KTKTG + T A+ LE +    
Sbjct: 508 NALAREIHTLAGAEFNISSPKQLGEILFEHLGLGSGKVKKTKTG-YSTNAETLEGLR-DQ 565

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +PII N+L +R  +K++STY D +   I   T RVHT ++   T TGRL+S +PNLQNIP
Sbjct: 566 HPIIDNVLTYRMWTKLRSTYLDGIGALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIP 625

Query: 725 IKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           ++T+ G+ +R A  +P      L+SADYSQIELRILAH++    L   F +  DIH   A
Sbjct: 626 VRTEEGRAVR-ALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTA 684

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+FGV ++ V+P+ RR AK +NF I+YG+S F LA  L I R EA  YI RYF R+ G+
Sbjct: 685 AEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHGV 744

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             +++K       NGYV T++GRR     + S     R+  ER A+N PIQG+AAD+ + 
Sbjct: 745 RTFLDKIVADAHTNGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIKI 804

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+  + +L+   + +++LLQ+HDELV EV  EE  T ++++  +M  A      L VPL
Sbjct: 805 AMVRAYDALQAADVKSRILLQVHDELVMEVTAEETETVTELLRTAMSGAA----ELAVPL 860

Query: 963 KVNIKVSNNWQE 974
            V++ V  NW E
Sbjct: 861 AVDVHVGKNWAE 872



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 97/250 (38%), Positives = 141/250 (56%), Gaps = 9/250 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DGSS  +RAFYA  L      G+  NA+ GF  ML KLL    KE   +   + FD  
Sbjct: 8   VIDGSSLFFRAFYALQLPPNAR-GIHTNAVHGFAMMLVKLL----KELSPTQIVIAFDRS 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR  +YPDYK  R K PE L+ Q+PL++   +A GI  +E+  +EADDII T    A
Sbjct: 63  RTTFRTALYPDYKGTRDKTPEELIAQIPLLKELAEALGISFLELDDYEADDIIGTLAVQA 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCLQA 184
             EG    +I+ D+D +QL+ P   +  T K     +  D     +++G PP +++ ++ 
Sbjct: 123 AAEGVETRVITGDRDALQLIRPQLTVLLTKKGISETKAYDTAAFEEEYGFPPIRLIDMKG 182

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PG+G KTA  LL  Y  +EN+L +A+ +  KK   ++ +Y   A LS+
Sbjct: 183 LMGDSSDNIPGVPGVGPKTATKLLLAYETIENVLDHATEVSGKKLSTSLAKYRAQALLSK 242

Query: 245 KLVMLRTDVP 254
           +L  +   VP
Sbjct: 243 QLATIECHVP 252


>gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
 gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
          Length = 878

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/488 (37%), Positives = 277/488 (56%), Gaps = 27/488 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI L +Y+L+S        ++A  +L+           SS+P  K  D+    H +    
Sbjct: 411 DIGLAAYLLNSNTDVFAYDALADTYLA-----------SSLPETKDDDAAAAVHVLVAPR 459

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           ++  L    R  L  +    VY ++D P++  ++ ME  G Q+D D L  + +     + 
Sbjct: 460 LVNAL----REALDKDGSADVYYKIDLPLVSTLTLMERVGAQLDVDALAAMGSATRGEID 515

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           SL  +I++L+GE+FN+ SPKQLG ILF KL  P G KT+TG + T A  L+++    +PI
Sbjct: 516 SLRAHIHELAGEEFNVDSPKQLGVILFDKLGLPHGKKTRTG-YSTNAATLKKLQS-IHPI 573

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
              +L +R+L+K+ STY D+LP  +     RVHT ++   T TGRL+S +PNLQNIP++T
Sbjct: 574 ADEVLRYRELAKMSSTYIDALP-RMRADDGRVHTHFNQTVTTTGRLSSSDPNLQNIPVRT 632

Query: 728 DLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           D G++IR  F+  P  +    +SADYSQIELR+LAH++    L   F +  D H   AA 
Sbjct: 633 DFGRRIRECFV--PLHEGDVFVSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAAR 690

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F V +++V+PQ+R  AK +NF I+YG   F LA  L I   EA D I RYF  +PG+  
Sbjct: 691 VFDVPVDEVTPQLRSRAKAVNFGIVYGQQAFGLAQSLDIGFKEAQDMIDRYFEAYPGVRS 750

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y++KT    +Q GY  T+FGR+ H  E+    +  R   ER A+N P+QGSAADI + AM
Sbjct: 751 YLDKTVEDAKQTGYAVTMFGRKRHIPELKMRNAVQRGFGERTAMNHPMQGSAADIIKLAM 810

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
             V + L +    ++++LQ+HDEL   VP +E+   S ++   M       + L+VPL V
Sbjct: 811 NEVQRRLIEDGFESQLMLQVHDELDLSVPADELERLSDMVREVMSTI----VELKVPLLV 866

Query: 965 NIKVSNNW 972
           ++    NW
Sbjct: 867 DVSSGPNW 874



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 150/285 (52%), Gaps = 11/285 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S +YRA++A P      DG P NA+ GF  M  KL + ++ +++       FD  
Sbjct: 7   VIDGNSLMYRAYHAVPPTMNAPDGTPTNAVFGFIAMFLKLYEMAKPDAVI----CAFDAG 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
              FR +    YKA RP + + L  Q P++    +A  +P + ++G+E DDI+ T     
Sbjct: 63  KPEFRMKALETYKAQRPPMDDELRVQFPVIESLLEAMSVPVVRLKGWEGDDILGTIAARD 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQ 183
           E+ G+   +I+ DKD  QLV+  T +  T K+   D+       V +++G+ PE+     
Sbjct: 123 EELGYETLLITGDKDAYQLVTDLTRVV-TTKKGITDVAIYGPAEVEERYGVTPEQFPDFL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS DNIPG+PGIG KTAA LLQ YG ++ I  N  ++K K+  EN+    + A +S
Sbjct: 182 GLKGDSADNIPGVPGIGDKTAAKLLQNYGTMDGIYENLDKLKGKQ-LENLTNNRDVAFIS 240

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R++  +  DV + + LE       +   +     A+ F   + ++
Sbjct: 241 REVATIVRDVDLEVDLEAAAFPAFDAQAVTDAFHAVRFNSHLQKM 285


>gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 857

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/490 (38%), Positives = 289/490 (58%), Gaps = 29/490 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D++L +Y+LD  R+S+ ++ +A ++               +P+ + +   V   A+  + 
Sbjct: 392 DVVLGAYLLDPTRTSYALSYLATRF--------------EVPLPEGAAPSVCAEALFAA- 436

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
              Q+W      L    L  +YER++ P++  +S ME  G  +D   L+ +   ++    
Sbjct: 437 ---QVWEKEEAALQQFGLTDLYERIEAPLLYTLSVMETNGFTVDTARLQAMKTALTAQAA 493

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           +LE  IY+ +G  FN++SPKQLG +LF  L  P   KTKTG + T A+ LE +    +P 
Sbjct: 494 ALENEIYEAAGAAFNINSPKQLGHMLFEVLHLPVRKKTKTG-YSTDAEVLESLRDA-HPA 551

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ I+ +R L K+ STY D L   I   T RV+T +    T TGRL+S +PNLQNIPI+T
Sbjct: 552 VEKIVRFRALKKLISTYLDGLEPLIVPATGRVYTSFHQTVTATGRLSSSDPNLQNIPIRT 611

Query: 728 DLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           + G+KIR  F+  P K    ++S DYSQIELR+LAH+++   +   F+ + DIHR  A+E
Sbjct: 612 EQGKKIRSLFV--PGKGYDYILSGDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASE 669

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F +  E+V+P+ R HAK +NF IIYGIS F LA  + I R++A  YI+ YF R+  IH 
Sbjct: 670 VFHIPWEQVTPEERSHAKAVNFGIIYGISDFGLARNIGISRAQAKQYIESYFARYSTIHG 729

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E+     ++ G   T+FGR     +INS   + R++ ER A+N PIQGSAADI + AM
Sbjct: 730 YMEELVRQAKETGITRTMFGRMRTLTDINSKNFTRRSLAERMAMNTPIQGSAADIIKLAM 789

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
            +V + LE  +L +++L+Q+HDELV EVP +E+     ++  +ME+A    + L VPL  
Sbjct: 790 NAVQRELEQRQLRSRLLVQVHDELVLEVPADELELVKTLLKRTMEEA----VTLSVPLIA 845

Query: 965 NIKVSNNWQE 974
           ++    NW+E
Sbjct: 846 DLHYGKNWEE 855



 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/292 (36%), Positives = 166/292 (56%), Gaps = 18/292 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF-AVIF 65
           L ++DGSS +YRAFYA P L+    G   NA+ GF NML KL      E +  H+ AV F
Sbjct: 5   LVIIDGSSLLYRAFYAIPTLTDSQ-GRYTNAVYGFLNMLLKLY-----EELDPHYVAVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKA R   PE L PQ  L+R   +  GI  +E +G+E DDI+ T  
Sbjct: 59  DKDKHTFRHTLYTDYKATRKPAPEELRPQFALIREVLECLGIHVLEKEGYEGDDILGTVA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             ++  G  V +++ D+D +QL      +Y T K     + +  E +++++G  P +++ 
Sbjct: 119 RQSQAAGLEVAVVTGDRDALQLADRAITVYLTKKGITHMQAVTPEVMVREYGYTPAQVID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++AL GD+ DNIPG+PG+G KTA  L+QE+G ++ +    S +K  K RE + +Y E+A 
Sbjct: 179 MKALMGDTADNIPGVPGVGEKTALKLIQEFGGVDGVYARLSEVKGVKLREKLQQYRESAM 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPR---LISFLKALEFTKLINRVAT 290
           LS++L  +  DVP+T   E  + +    PR   + +  + L F +L+ R A 
Sbjct: 239 LSKQLAAICCDVPLTYTKETFLPQ----PREEEVRALFQQLGFRQLLTRFAA 286


>gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205]
          Length = 985

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 212/638 (33%), Positives = 345/638 (54%), Gaps = 57/638 (8%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDT----MDAFHSKPIAIAISTLDQKDDTSFKVET 426
           I +++ ++  VQ+L         +  DT    ++ F ++ + + +   +  D      + 
Sbjct: 369 ITSSEALEALVQRLLGCCDRQSPVALDTETTSLNPFQAELVGLGVCWGEGLD------QL 422

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            +I L  H ++ S        ++L  L  +  +    K   N KYD+L+L R+G+ + G 
Sbjct: 423 AYIPLG-HQAELSDPAQLPLDQVLGALAPWLSSAAHPKTLQNAKYDRLILLRHGLPLAGV 481

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQK---WLSYTRKEIL--KSRKSSIPIDKISDSQVQE 540
             D +L  Y+ D+  + H +  +AQ+   +L  +  E++   +  S++P+     +Q   
Sbjct: 482 VMDTLLADYLRDA-NAKHGLELLAQRNFGFLPTSYSELVPKGANFSAVPM-----AQAAL 535

Query: 541 HAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           +   + +V  +L  LLR +L  + E L  + ++++ P+  V++ ME TGI+ID D L ++
Sbjct: 536 YCGMDVHVTYRLTPLLRGQLEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDYLGEL 595

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQD 656
           S E+   L  LE +  + +G  FNL+SPKQLG++LF  L        KTKTG W T A  
Sbjct: 596 SRELKATLERLESDAKEAAGTDFNLASPKQLGELLFDTLGLDRKKSRKTKTG-WSTDATV 654

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++    +P++  +LE R LSK+KSTY D+LP  +   T RVHT ++ A T TGRL+S 
Sbjct: 655 LEKLEDA-HPVVPLVLEHRTLSKLKSTYVDALPALMEAETGRVHTDFNQAVTATGRLSSS 713

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIP++T+  ++IR+AF+      LISADYSQIELRILAH++    L + +++  D
Sbjct: 714 NPNLQNIPVRTEFSRRIRKAFLPEAGWTLISADYSQIELRILAHLSGEEVLVKAYQSGDD 773

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H + A  +F  + ++V+   RR  KTINF +IYG+   R A +  + ++EA +++ +Y 
Sbjct: 774 VHALTARLLF--DKDEVTSDERRLGKTINFGVIYGMGVQRFARETGVSQAEAKEFLSKYK 831

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE------------ 884
            R+P +  ++E  +      GYVETI GRR  +     P    R++ +            
Sbjct: 832 QRYPKVFAFLELQERLALSRGYVETILGRRRPF--AFDPSGLGRHLGKDPLEIELEVARR 889

Query: 885 --------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
                   RAA NAPIQGS+ADI + AM+ + + L +  L  ++LLQ+HDELV E   E 
Sbjct: 890 GGMEAQQLRAAANAPIQGSSADIIKLAMVQLQQRLTESALPARLLLQVHDELVLEAAPEA 949

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + T   +   +ME+A    + L VPL V   V  NW E
Sbjct: 950 LETVLNLTRETMERA----VTLSVPLVVETGVGPNWME 983



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/279 (36%), Positives = 141/279 (50%), Gaps = 36/279 (12%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        LS K +G+P +   GF   L  LL N +   +A   
Sbjct: 11  LLLVDGHSLAFRSFYAFSKGGEGGLSTK-EGIPTSVTYGF---LKALLDNCK--GLAPQG 64

Query: 62  AVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADD 119
            VI FD    TFR+E    YKA+R   PE     L  L ++  Q+  IP     G+EADD
Sbjct: 65  VVIAFDTAEPTFRHEADEAYKAHRDVAPEHFFQDLGNLQQILEQSLDIPLCMAPGYEADD 124

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVI 169
           ++ T    A  +G+ V I+S D+DL QLV        LY        +    +I  + V+
Sbjct: 125 VLGTLANRAANDGWRVRILSGDRDLFQLVDDKRDIAVLYMGGGPYAKSSGPLEIRRDGVV 184

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---- 225
            K G+ PE++V L+ALTGDS DNIPG+ G+G KTA  LLQ YG+L+ I     +++    
Sbjct: 185 AKLGVTPEEVVDLKALTGDSSDNIPGVKGVGPKTAINLLQAYGDLDGIYAALEQLEAAGP 244

Query: 226 QKKRRENILEYA---------ETARLSRKLVMLRTDVPI 255
           + K  +  L+ A         E A  SR L  +  D+P+
Sbjct: 245 KAKDPKGALKGALLGKLSTDRENAYRSRMLAEILVDIPL 283


>gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57]
          Length = 893

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 280/993 (28%), Positives = 460/993 (46%), Gaps = 130/993 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y      PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMGAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E+A LS++L  L         ++      C  P                         
Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFSSCAFP------------------------- 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                        +EN  + I+ E+     I T     L +  + + S+ TP    LE  
Sbjct: 267 -------------SENPLLKIKDELKEYGFIST--LRDLENSPTPLISDNTP---LLENT 308

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAIAISTL 414
             L   P        + NT+ +  ++++L+   +  F +++ D       K +A+A    
Sbjct: 309 PLLDNAP-KKSRMIILENTESLSAFLERLKKTNARIFMRLVLDK----EKKVLALAFLLE 363

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YD 472
           DQ      + E +F   S+   Q++                FF+  +H   IGH++K   
Sbjct: 364 DQGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLL 406

Query: 473 KLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSI 528
             +  +Y +S+     +D  +++++ +  +   D              E+LK   ++  I
Sbjct: 407 SFLKAKYQVSLEDIRIQDTQILAFLKNPEKVGFD--------------EVLKQYLKEEWI 452

Query: 529 PIDKISDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           P +KI D + +  A +        N + +L        + E LL +   ++ P + V+  
Sbjct: 453 PHEKIKDFKTKSKAGKLELLSVELNALKRLCEYFEKGGLEEGLLALAREVETPFMKVLMG 512

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G +ID    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL  P  
Sbjct: 513 MEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLGLPKN 572

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            K+ +   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT 
Sbjct: 573 -KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTT 625

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHI 761
           +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH 
Sbjct: 626 FIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHF 685

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L
Sbjct: 686 SQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETL 742

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            IP +EA  YI+ YF RF  I +Y+ + K  + +     T+ GR   +D        I+ 
Sbjct: 743 NIPLNEAKSYIEAYFKRFSSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYIKG 801

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
              R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      
Sbjct: 802 NYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQ 860

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q I   +     P   LRVPL+ +  ++  W E
Sbjct: 861 QEIQRILNDEVYP---LRVPLETSAFMAKRWNE 890


>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 686

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 238/727 (32%), Positives = 372/727 (51%), Gaps = 76/727 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAANDGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V      + A
Sbjct: 241 DAADLSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N  PV      T+N    I    +   T+   Q          + +EQT  K+ ++R   
Sbjct: 296 N--PV------TQNSAEKIPN--NYQATVSAPQ---------AVETEQTFAKVEIDR--- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS----- 412
                     Y  +     +Q W++K+  +   +    TD +D+  +  + I+       
Sbjct: 334 --------SRYETVTTMAQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGISFGLANGE 385

Query: 413 ----TLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLT-KEILSYLKKFFENEH 461
                L  K+  + + +    DL    ++  T       KN L     L  LK   E+  
Sbjct: 386 ACYIPLTHKEQVTLEPQQ--SDLFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESAD 443

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR-- 517
             KIG NIKYD  +   +G+ + G   D ML SY L+S GR  H++  +A ++L +    
Sbjct: 444 VKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIE 501

Query: 518 -KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLD 573
            +EI    K+ +  DKI+     ++A E+++V ++L  +L P+L  EK   L+ ++  ++
Sbjct: 502 FEEIAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPEL--EKAPTLVKLFNEIE 559

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+++V+S++E  G+ ID + L   S EI + L  LE+ ++  +GE FNL+S KQL +IL
Sbjct: 560 MPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAGEIFNLASTKQLQEIL 619

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           FTKL  P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN
Sbjct: 620 FTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMIN 679

Query: 694 KRTQRVH 700
           ++T RVH
Sbjct: 680 QKTGRVH 686


>gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
 gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
          Length = 875

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 180/529 (34%), Positives = 312/529 (58%), Gaps = 12/529 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506
           +++   K+ FE++   K+  +IK     L RYGI +   ++D++++ Y+LD  ++S+ + 
Sbjct: 351 DLVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSME 410

Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
               K + Y  K   +I    KS   I +  + ++  + ++      +L+  +  ++  E
Sbjct: 411 RSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEKI-SEIEEE 469

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            ++H+Y  ++ P+I V+  ME TG+ + ++ L ++       + S+E+++ +L G+K N+
Sbjct: 470 DMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKINI 529

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +S KQL ++LF  L+ P   K KTG   +T Q++ +   G + II  IL +R ++K+K+T
Sbjct: 530 NSSKQLAEVLFEDLELPVIKKNKTGP--STDQEVLEALSGRHEIIDYILRYRTITKLKTT 587

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D + + I K   ++HT +      TGR++S  PNLQNIPI+T+ G+ IR+AF+     
Sbjct: 588 YIDGMVDLI-KEDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGN 646

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+ ADYSQIELR+LA +A    +   F++  DIHR  A+E+F V+ +KV+   R +AK 
Sbjct: 647 MLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGI  + L+  L I R EA +YI+ Y   + GI +Y+E      ++ GYVETI 
Sbjct: 707 VNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIM 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  E+ S   ++R+  ER A+N PIQGSAADI + AM+  +  L + KL  K++LQ
Sbjct: 767 NRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+ + P++E     +I+   M  A    ++L+V +K+++  ++NW
Sbjct: 827 VHDELIVDCPKDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADNW 871



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 166/288 (57%), Gaps = 12/288 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            ++DGSS ++R FYA   L+ K DG+  N + GF NM + ++     + +     V FD 
Sbjct: 6   LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMGKINPDLVV----VCFDR 60

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              TFR+E Y +YK NR + PE L+ Q  +++   +A G+  I+++G+EADDI  T    
Sbjct: 61  KEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQ 120

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCLQ 183
           A  + + V +++ DKD +QL+   T +  T   + E KI D++ + +++GI P++M+ L+
Sbjct: 121 ASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDALKEEYGITPKQMIDLK 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD  DNIPGI G+G KTA   +Q+YG++E +  +   I  KK ++ +++  + A LS
Sbjct: 181 GLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLS 240

Query: 244 RKLVMLRTDVP---ITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R+L  + TDVP   +   +E   +++ +   LI  L  LEF   I ++
Sbjct: 241 RELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKL 288


>gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
          Length = 930

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 175/491 (35%), Positives = 296/491 (60%), Gaps = 17/491 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS--QVQEHAIEN 545
           D  +  Y+L+  + ++    +A+ +L  T    + SR   +  + + D+  + +++A++ 
Sbjct: 447 DAGVAGYLLNPLKDTYAYDDLARDYLGLT----VPSRADLLAKEDLGDALWRGEKNAVDC 502

Query: 546 SNVI-LQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
              +    W    P   +L    +  +Y  ++ P+I  +  ME  G+++++  LK+    
Sbjct: 503 VCYMGYTAWKAAAPLAGQLKDTGMYSLYTDIEMPLIYSLFHMEQEGVKVERAELKEYGDR 562

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +   +  LE+ IY  +G +FN++SPKQLG+ILF +++ P G KTKTG + T A  LE++ 
Sbjct: 563 LKVGIAKLEQEIYQETGHEFNINSPKQLGEILFEQMELPGGKKTKTG-YSTAADVLEKL- 620

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+++ IL++RQL+K+ STYA+ L  +I +   R+H  ++   T TGR++S EPNLQ
Sbjct: 621 APDYPVVQKILDYRQLTKLNSTYAEGLAAYIGE-DGRIHGKFNQTITATGRISSTEPNLQ 679

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++  LG++IR+ F+       + ADYSQIELRILAH++    L + + ++ DIH + 
Sbjct: 680 NIPVRMALGREIRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAIT 739

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+++F V +++V+P  RR+AK +NF I+YGIS F L+  L I R EA +YI +YF  +PG
Sbjct: 740 ASQVFHVPLDEVTPLQRRNAKAVNFGIVYGISAFGLSEGLSISRKEAVEYIDKYFETYPG 799

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  +++      ++ GYV T++GRR    E+ S     R   ER A+N+PIQG+AAD+ +
Sbjct: 800 VKTFLDGLVKQGKEQGYVTTLYGRRRPIPELKSANFMQRQFGERVAMNSPIQGTAADVMK 859

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V + L+   L ++++LQIHDEL+ E   +EI    +I+   M+ A     +LRV 
Sbjct: 860 IAMIAVDRELKKRGLKSRIVLQIHDELLIETARDEIEAVKEILTDKMKHAA----DLRVS 915

Query: 962 LKVNIKVSNNW 972
           L+V  +V  +W
Sbjct: 916 LEVEAEVGKSW 926



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 172/300 (57%), Gaps = 13/300 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG S + RAFY  P L+   +GL  NA+ GF N++ K+L+  +    A H AV 
Sbjct: 2   DKLVLIDGHSIMNRAFYGVPDLTNS-EGLHTNAVYGFLNIMLKILEEEK----ADHAAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y  YK  R  +P+ L  Q+P+++   +A GIP + ++GFEADDI+ T 
Sbjct: 57  FDLKEPTFRHEMYDAYKGTRKPMPQELHEQVPVMKDVLKAMGIPIMTLKGFEADDILGTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
               + +G  V+++S D+DL+QL         P T    T  ++    E V++++ + PE
Sbjct: 117 AKRCQAKGIQVSVVSGDRDLLQLADEHIKIRIPRTSRGVTEIKDYFP-EDVLREYQVTPE 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DNIPG+P IG KTA  ++ +Y ++EN   +   I+  + ++ + E+ 
Sbjct: 176 EFIDVKALMGDASDNIPGVPSIGEKTATSIIAQYKSIENAYAHLEEIRPPRAKKALEEHY 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A++SRKL  + TD P+    E   +ED   P    ++K LEF  ++ R   T   +AA
Sbjct: 236 DMAQMSRKLAAICTDCPVEFNYEDARIEDLYTPEAYQYMKRLEFKSILARFDKTAAQEAA 295


>gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101]
          Length = 1020

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 202/555 (36%), Positives = 313/555 (56%), Gaps = 42/555 (7%)

Query: 448  EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506
            ++L+ L  +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+  + H + 
Sbjct: 478  QVLTALAPWLGSAQHPKALQNAKYDRLILLRHGLPLEGVVMDTLLADYLRDA-NAKHGLE 536

Query: 507  SIAQK---WLSYTRKEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL- 560
             +AQ+   +L  +  E++      S++PI+     Q   +   + +V  +L  LLR +L 
Sbjct: 537  LLAQRNFGFLPTSYSELVPKGADFSAVPIE-----QAALYCGMDVHVTRRLAPLLRAQLE 591

Query: 561  -IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
             +  +L  + +R++ P+  V++ ME TGI+ID   L ++S+E+ + L  LE +    +G 
Sbjct: 592  ELGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYLAELSSELGQTLQRLEADAKAAAGT 651

Query: 620  KFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
             FNL+SPKQLG++LF  L        KTKTG W T A  LE++    +P++  +LE R L
Sbjct: 652  DFNLASPKQLGELLFDTLGLDRKKSRKTKTG-WSTDAAVLEKLEDA-HPVVSLVLEHRTL 709

Query: 678  SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            SK+KSTY D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF
Sbjct: 710  SKLKSTYVDALPALMEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAF 769

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            +     +LISADYSQIELRILAH++    L Q ++   D+H + A  +  +  ++VS   
Sbjct: 770  LPEAGWQLISADYSQIELRILAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADE 827

Query: 798  RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
            RR  KTINF +IYG+   R A +  + +++A +++ +Y  R+P +  ++E  +      G
Sbjct: 828  RRLGKTINFGVIYGMGAQRFARETGVSQTQAKEFLSKYKQRYPKVFAFLELQERLALSRG 887

Query: 858  YVETIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADI 899
            YVETI GRR    +D             EI+   + +  +     RAA NAPIQGS+ADI
Sbjct: 888  YVETILGRRRPFAFDPSGLGRHLGKDPLEIDLDIARRGGMEAQQLRAAANAPIQGSSADI 947

Query: 900  TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
             + AM+ +H  L    L  ++LLQ+HDELV E   E +     +   +ME+A    + L 
Sbjct: 948  IKLAMVQLHHQLAASGLPARLLLQVHDELVLEAAPEALEAVRTLTRETMERA----VELS 1003

Query: 960  VPLKVNIKVSNNWQE 974
            VPL V   V  NW E
Sbjct: 1004 VPLLVETGVGPNWME 1018



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 141/278 (50%), Gaps = 34/278 (12%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        LS K +G+P +   GF   L  LL N  K  +    
Sbjct: 13  LLLVDGHSLAFRSFYAFSKGGEGGLSTK-EGVPTSVTYGF---LKALLDNC-KGLVPQGV 67

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
            + FD    TFR+E    YKA+R + PE     L  L ++  QA  IP     G+EADD+
Sbjct: 68  VIAFDTAEPTFRHEADEAYKAHRDEAPEHFFQDLGNLQQILQQALDIPLCMAPGYEADDV 127

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A  +G+ V I+S D+DL QLV        LY        +    +I  E VI 
Sbjct: 128 LGTLANRAANDGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPVEIRREGVIS 187

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK----Q 226
           K G+ PE++V L+ALTGDS DNIPG+ G+G KTA  LLQ + +L+ +    + ++    +
Sbjct: 188 KLGVTPEEVVDLKALTGDSSDNIPGVKGVGPKTAINLLQAHTDLDGVYTALAELQAAGPK 247

Query: 227 KKRRENILEYA---------ETARLSRKLVMLRTDVPI 255
            K  + +L+ A         ++A  SR L  +  D+P+
Sbjct: 248 AKDPKGVLKGALLGKLEADRDSAYRSRMLAKILVDIPL 285


>gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 884

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/486 (38%), Positives = 283/486 (58%), Gaps = 23/486 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ LM+Y+LD  R+++    + +++              S+P   I+   V    +    
Sbjct: 417 DVSLMAYLLDPTRTNYGYLYLTERF--------------SVP--SIATGSVDVECVSMVK 460

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L +       L  E L  +Y  ++ P+I  +  ME  GI ID   L++ + +    L 
Sbjct: 461 ALLAMDDAAVKALQDESLWDLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELE 520

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           ++++ IY+L+GE FN++SPKQLG ILF K+  P   KTKTG + T A+ L+ +   ++PI
Sbjct: 521 AVQQEIYELAGETFNINSPKQLGIILFEKMNLPVIKKTKTG-YSTDAEVLDMLRH-ESPI 578

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ IL +R ++K+ STY + L   IN  T R+HT ++   T TGRL+S +PNLQNIP++T
Sbjct: 579 VEKILAYRSVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 638

Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           + G++IR  F        L+SADYSQIELRILAH++    L + F +  DIHR  AAE+ 
Sbjct: 639 EKGREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVL 698

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G + ++V+ + R HAK +NF IIYGIS F L+  L I R EA +YI+ YF R+P + EY+
Sbjct: 699 GKSQDEVTSEERSHAKAVNFGIIYGISDFGLSRDLGITRQEAKNYIELYFSRYPKVKEYM 758

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           +       + G V T+FGR     +INS   + R+  ER A+N PIQG+AADI + AM  
Sbjct: 759 DNMVIEAHETGKVRTMFGRMRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNK 818

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V   LE+    +++LLQ+HDELV EV  EE+     ++  +ME      + L VPL V++
Sbjct: 819 VESILEEKAFKSRLLLQVHDELVLEVVNEELDAIQTLLKETMESI----VELHVPLIVDV 874

Query: 967 KVSNNW 972
             + NW
Sbjct: 875 HNAENW 880



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 177/298 (59%), Gaps = 10/298 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +  + + IA    V FD
Sbjct: 14  LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEIKPDYIA----VAFD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +G+E DDI+ + + 
Sbjct: 69  KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGYEGDDILGSLSK 128

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                  AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++ +
Sbjct: 129 KFGSSDLAVQIITGDRDNLQLVTDYSHVFLTKKGISDMLEVTLDNMTELYGYGPDKVIEM 188

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GDS DNIPG+PG+G KTA  L+ EYG+LE++  N   I  KK +E ++E  E A L
Sbjct: 189 KALMGDSSDNIPGVPGVGEKTALKLINEYGDLESVYENIDNISGKKLKERLVENKELAFL 248

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           SR+L  ++TD+ ++  L+  + ++ +   +    + L FTKL  R+A+    +  + E
Sbjct: 249 SRQLATIKTDMDLSYTLDQFV-QNFHLGEVKPMFETLGFTKLTPRLASVMGSEGGDAE 305


>gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
 gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
          Length = 875

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 180/529 (34%), Positives = 313/529 (59%), Gaps = 12/529 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506
           +++   K+ FE++   K+  +IK     L RYGI +   ++D++++ Y+LD  ++S+ + 
Sbjct: 351 DLVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSME 410

Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
               K + Y  K   +I    KS   I +  + ++  + ++      +L+  +  ++  E
Sbjct: 411 RSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYIVKYMMFTNKLYEKI-SEIEEE 469

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            ++H+Y  ++ P+I V+  ME TG+ + ++ L ++       + S+E+++ +L G+K N+
Sbjct: 470 DMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKINI 529

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +S KQL ++LF  L+ P   K KTG   +T Q++ +   G + II  IL +R ++K+K+T
Sbjct: 530 NSSKQLAEVLFEDLELPVIKKNKTGP--STDQEVLEALSGRHEIIDYILRYRTITKLKTT 587

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D + + I K+  ++HT +      TGR++S  PNLQNIPI+T+ G+ IR+AF+     
Sbjct: 588 YIDGMVDLI-KKDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSGGN 646

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+ ADYSQIELR+LA +A    +   F++  DIHR  A+E+F V+ +KV+   R +AK 
Sbjct: 647 VLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGI  + L+  L I R EA +YI+ Y   + GI +Y+E      ++ GYVETI 
Sbjct: 707 VNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIM 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  E+ S   ++R+  ER A+N PIQGSAADI + AM+  +  L + KL  K++LQ
Sbjct: 767 NRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+ + P++E     +I+   M  A    ++L+V +K+++  ++NW
Sbjct: 827 VHDELIVDCPKDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADNW 871



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 166/288 (57%), Gaps = 12/288 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            ++DGSS ++R FYA   L+ K DG+  N + GF NM + ++     + +     V FD 
Sbjct: 6   LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMGKINPDLVV----VCFDR 60

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              TFR+E Y +YK NR + PE L+ Q  +++   +A G+  I+++G+EADDI  T    
Sbjct: 61  KEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQ 120

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCLQ 183
           A  + + V +++ DKD +QL+   T +  T   + E KI D++ + +++GI P++M+ L+
Sbjct: 121 ASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDALKEEYGITPKQMIDLK 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD  DNIPGI G+G KTA   +Q+YG++E +  +   I  KK ++ +++  + A LS
Sbjct: 181 GLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLS 240

Query: 244 RKLVMLRTDVP---ITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R+L  + TDVP   +   +E   +++ +   LI  L  LEF   I ++
Sbjct: 241 RELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKL 288


>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
 gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 166/410 (40%), Positives = 250/410 (60%), Gaps = 2/410 (0%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L+ + + L+ P+I V++ ME  G+++D + L     E+ K+L  + E++Y  +   FN+ 
Sbjct: 465 LVELMKTLELPLIPVLADMESAGVKLDAEALADFLEEVQKDLDRITEDVYREAQGPFNIR 524

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +QLGD+LF +LK P   KT+ GQ  T+   LE+++ G +P++  +LE+R+L K++STY
Sbjct: 525 SAQQLGDVLFNRLKLPVSGKTRGGQASTSQDVLEKLS-GHHPVVDALLEFRKLEKLRSTY 583

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            + LP  +     R+ T ++  +T TGRL+S  PNLQNIP++  LG+++R  F +P  KK
Sbjct: 584 LEPLPRLMGG-DGRIRTTFNQLATATGRLSSSNPNLQNIPVRGALGRRMRACFTAPEGKK 642

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           LISADYSQIELR+LAH+++   L   F    DIH   A+ +F     +++P  RR+AKTI
Sbjct: 643 LISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLFDAPPSEITPDQRRNAKTI 702

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF +IYG+ P +LA +L+IP SEA  ++ RYF R  G+  + E  +   R+ GYV T+ G
Sbjct: 703 NFGLIYGMGPQKLAQELKIPLSEAKAFMARYFERLQGLKHFYENVEEMAREQGYVTTLAG 762

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR    +I +     R++  R AIN  IQGSAADI + AM++VH       L  K+LLQ+
Sbjct: 763 RRRPLPDIQAESQQARSLARRQAINTLIQGSAADIIKLAMLAVHGDETLRTLDAKLLLQV 822

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+ EVPE     A + +   M       I L VPLK +   + NW +
Sbjct: 823 HDELLLEVPEAAAQEAGERVAALMANVRPGGIVLDVPLKADWGAAENWGD 872



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+DGS+F+YR FYA   + R  DG P +A+     +L ++L    +E    HFA + D
Sbjct: 12  IYLMDGSAFVYRGFYANQSMQRS-DGFPTSALFIVARILMRIL----REEQPKHFAFVLD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT- 125
                FR+E++P YKA R   PE L+ Q+  +    +A G+        EADD +A+   
Sbjct: 67  GHGPNFRHELFPLYKAQRSATPEDLIKQIDPIHRLIKALGLHLEVSDSCEADDCLASLAK 126

Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKI-DIEHVIKKWGIPPEKMVCL 182
            Y  E+    V +++TDKDL Q +     ++D   ++EKI  ++   ++ G+ P +   +
Sbjct: 127 RYREER---PVILVATDKDLKQCLHDNVMMWDPASRDEKIVTLKSFEEETGLKPTQWPDV 183

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAET 239
           QA+ GDS DNIPG+ G+G KTA  L  EY +LE I    + +K   QKK    +    E 
Sbjct: 184 QAIIGDSSDNIPGVRGVGPKTAEKLFHEYASLEAIRDGFASMKPALQKKFDGQL----EA 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
             L R+L  L T    ++ L+ + +   N     + L+  E + L   +AT
Sbjct: 240 MFLYRQLTTLDTSRCASLTLDAMRVRPVNRQEAATLLREFELSSLERELAT 290


>gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
 gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
          Length = 871

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 185/487 (37%), Positives = 286/487 (58%), Gaps = 22/487 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+++ +Y+L+  +S +D   +A++ L      +L   K+        ++     A+E   
Sbjct: 405 DVIVAAYLLNPLKSDYDYEDVAREQLG-----LLIDEKTEESTKACYEAYTAYMAVEP-- 457

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
                   L  K+    +  ++  ++ P++  + +ME  GI ++ + LK    ++   ++
Sbjct: 458 --------LNRKMEETGMTKLFREIEMPLVFTLYEMEQAGIHVEGEALKAYGDQLGNRIV 509

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            LE+ IYD++GE FN++SPKQLG ILF KL+ P   KTKTG + T A  L+++   + PI
Sbjct: 510 ELEKEIYDMAGETFNINSPKQLGVILFEKLEMPHAKKTKTG-YSTAADVLDKL-APEYPI 567

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           +  ILE+RQL+K+KSTYAD L   I     R+H  ++   T TGR++S EPNLQNIP++ 
Sbjct: 568 VAKILEYRQLTKLKSTYADGLATFIGP-DGRIHGKFNQTITATGRISSTEPNLQNIPVRM 626

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           +LG+ IR+ F+       + ADYSQIELRILAH +    L Q +  + DIHRM A+++F 
Sbjct: 627 ELGRLIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQVFH 686

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V  ++V+   RR+AK +NF I+YGIS F L+  L I R EAA YI+ YF  +PGI  +++
Sbjct: 687 VPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAARYIEHYFETYPGIKTFLD 746

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           +     ++ GY  T+FGRR    E+ S     R+  ER A+NAPIQG+AADI + AMI V
Sbjct: 747 QCVADAKEKGYAVTLFGRRRPVPELKSSNFMQRSFGERVAMNAPIQGTAADIIKIAMIRV 806

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
              ++   + ++M+LQ+HDEL+ E  EEE+    +I+   ME A     +L VPL  ++ 
Sbjct: 807 SDEMKKQNMKSRMILQVHDELLIEAAEEEVDEVKKILKEEMEHAA----SLSVPLLADMH 862

Query: 968 VSNNWQE 974
              NW E
Sbjct: 863 TGKNWYE 869



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 174/336 (51%), Gaps = 40/336 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L   + E    +  V FD
Sbjct: 5   IVLIDGHSILNRAFYGVPDLTNS-EGLHTNAVYGFLNIMFKILDEEKPE----YLTVTFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+E+Y +YK  R  + E L  Q+P+++   +A  I  IE  G EADD++ T ++
Sbjct: 60  VHAPTFRHEMYQEYKGTRKPMAEELRQQVPVIKEVLKAMNIEIIEQAGLEADDLLGTISH 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMV 180
             EKEG  V+IIS D+D +QL +          K+ K +IE      V +++G+ P + +
Sbjct: 120 QCEKEGLDVSIISGDRDTLQLTTEHIKVRIPKTKQGKTEIEDYLAADVKERYGVTPTEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GD+ DNIPG+PGIG KTA  ++QEY  +EN   +   +K  +  +N+ E+ E A
Sbjct: 180 DVKALMGDTSDNIPGVPGIGEKTATKIIQEYKTIENAYEHVDELKPPRASKNLKEFWEQA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPR--------LISFLKALEFTKLINR----- 287
           ++S+ L  +R D             D NG R             + L+F  L+ R     
Sbjct: 240 QMSKTLATIRLDAETEF--------DLNGARHGNPYTKEAHELFQKLQFKNLLGRFDVET 291

Query: 288 ----VATTYDCDA---ANIEPVVLDINTTENKGIAI 316
               V  T+ C+    A IE +  +    E  G+A 
Sbjct: 292 SANDVEATF-CEVTGKAAIEKIFKEAEKAEKVGVAF 326


>gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122]
 gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122]
          Length = 905

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 184/511 (36%), Positives = 286/511 (55%), Gaps = 38/511 (7%)

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +S R F DI L +Y+L S  SS+D A++ +++L+           +S+P    +  +   
Sbjct: 418 LSARAF-DIGLSAYLLQSNASSYDYATLCEEYLA-----------ASLPAFDDACDEACA 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK--------------LLHVYERLDKPMIDVVSQMEIT 586
           HA     V  +L   L   +  +                   Y  +D P++ V++ ME  
Sbjct: 466 HAF----VAPRLARALDGAMACDAEEASPDGTSGRSVGTRSCYYDIDLPLVPVLAVMERV 521

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G +ID D L ++   +++ +  +   +++L+GE+FNL SPKQL  +LF KL  P G KT+
Sbjct: 522 GARIDVDALAEMGRSVAEEIDGIRTRVFELAGEEFNLDSPKQLSVVLFEKLGLPHGKKTQ 581

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G + T A+ L ++    +PI + IL +R+L+K++STY ++LP  +      VHT ++  
Sbjct: 582 RG-YSTDAKTLSKLE-DVHPIAREILRYRELAKMESTYIEALP-RMRAGDGLVHTHFNQT 638

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKIT 765
            T TGRL+S +PNLQNIP++T+ G++IR  F+   T  L +SADYSQIELR+LAH+++  
Sbjct: 639 VTTTGRLSSSDPNLQNIPVRTEFGRRIRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDE 698

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F +  D H   AA +FGV +E+V+P MR  AK +NF I+YG   F LA  L I  
Sbjct: 699 HLVHAFCSGADFHASTAARVFGVPLEEVTPSMRSRAKAVNFGIVYGQQAFGLAQNLGIGF 758

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA + I RYF  +PG+  +++ T   VR  GY  T+FGRR H  E+ +   + R   ER
Sbjct: 759 KEAQEMIDRYFEAYPGVRAFLDGTVEEVRACGYATTMFGRRRHIPELKAKNPAQRGFGER 818

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N P+QGSAADI + AM  V + L D   A ++++Q+HDEL   VP  E+     ++ 
Sbjct: 819 TAMNHPMQGSAADIVKMAMNEVQRRLVDGGFAAQVMIQVHDELDLSVPVSELDAVGALVR 878

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +M       + L VPL V+++ +  W E +
Sbjct: 879 DAMTNV----VTLEVPLIVDVQSAKTWAEAH 905



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 152/285 (53%), Gaps = 11/285 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S ++RA++A P      DG P NA  GF +ML K  +++R ++I       FD  
Sbjct: 7   VIDGNSLMHRAYHAVPPTMNAVDGTPTNAAFGFMSMLLKFYEDARPDAIV----CAFDAG 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             T R E    YKA RP + + L  Q P++     A GIP ++++G+E DDI+ T     
Sbjct: 63  KPTHRIEAMKAYKAQRPPMDDELRVQFPVIEGLLDAMGIPVVKVKGWEGDDILGTIAARD 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKMVCLQ 183
           E  G+   +++ DKD  QLVS  T +  T ++   D+     + V++++G+   +     
Sbjct: 123 EALGWNTLLVTGDKDAYQLVSDHTRVV-TTRKGITDVVIYGPDEVLERYGVTAAQFPDFL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD+ DNIPG+PGIG KTA  LLQ YG+++ I  N  ++K K+  +N+ +  + A LS
Sbjct: 182 GLQGDTADNIPGVPGIGPKTATKLLQAYGSMDGIYKNLDKLKGKQ-LQNLADNRDQAYLS 240

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R L ++  D+   + LE           +     A++F+  + RV
Sbjct: 241 RDLAVIVQDLDFELDLESAAFPSFAASAVAEAFGAVQFSSHLARV 285


>gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
 gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
          Length = 916

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 201/538 (37%), Positives = 314/538 (58%), Gaps = 28/538 (5%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS 501
           KNTL K I     KF        I +N K     L   G + +     M+++Y L S ++
Sbjct: 400 KNTLIKFIAELDVKF--------ISYNFK----TLLNLGFTFKSMYMDMMIAYHLISSQT 447

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV---ILQLWLLLRP 558
             D+     ++ +   K+     K++     I    V E A   S +   IL ++  +  
Sbjct: 448 KMDVFIPITEYSNVDAKDF----KTTFGKAHIETLLVGEFAGYLSKIGLGILAIYDEINH 503

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
            L  E+L  +  + + P+I V+S ME  GI+ID    K  S E+ K L  +E+ IY+ +G
Sbjct: 504 ILHKEELYDILIQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKIEKAIYEEAG 563

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E+FN++SPKQLGDILF K+  PSG KTKTG + T    LE +      I + +L++R+L+
Sbjct: 564 EEFNINSPKQLGDILFVKMNLPSGKKTKTG-YSTDVMVLEDLESYGYNIARLLLDYRKLN 622

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+K+TY D+LPN ++  + R+HT ++   T TGRL+S EPNLQNIP+KTD G KIR  F+
Sbjct: 623 KLKTTYVDTLPNLVDSNS-RIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFV 681

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQM 797
           +   K L+S DYSQ+ELR+L  ++K   L + +    D+H + A  IF + + + V+ + 
Sbjct: 682 AGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSDDVTREQ 741

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R  AK INFSIIYG + F LA +L+IP  +A++YIK+YF ++P +  + ++   F  ++G
Sbjct: 742 RTIAKIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHG 801

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           YV+T+FGR+ +   I+S   +I+   ER A+N  IQG+AA++ ++ M+ V+++L+D K  
Sbjct: 802 YVKTLFGRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYETLKD-KDD 860

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC-LPKINLRVPLKVNIKVSNNWQE 974
             +LLQ+HDEL+FEV E  +   S+I+   M+    L  +NL     +NI +  NW E
Sbjct: 861 IALLLQVHDELIFEVEESSVEKYSEILADIMKNTVKLEDVNLN----ININIGKNWAE 914



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 150/313 (47%), Gaps = 22/313 (7%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++    KE    + A  FD  
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSII----KEFNPDYMAAAFDVK 59

Query: 69  AVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
             +  R EI+ DYK+NR   PE L+ Q+P +     AF I    I+ +EADD++ +    
Sbjct: 60  RSSLKRTEIFGDYKSNRQSTPEDLVAQIPRIEEVLDAFNINRYRIESYEADDVLGSIAKK 119

Query: 128 AEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKEEKIDI----EHVIKKWGIPPEKMV 180
             K+   V I++ DKDL QLV        L    + EK  +    E V+   G+ PEK+ 
Sbjct: 120 IAKDDLEVIIVTGDKDLSQLVEKNITIALLGKGTEGEKFGMLRTAEDVVNYLGVVPEKIP 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-----RENILE 235
            L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K  +       +N+  
Sbjct: 180 DLFGLIGDKSDGIPGVTKIGEKKALAIFSKYDSLEKIYENIDDLKNIEGIGPSLIKNLTN 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             + A LSR+L  + T++ I +  E+L     +  +L    K LEF   I ++       
Sbjct: 240 EKDIAFLSRELAKIFTNLDINLEEENLKYS-MDKEKLYELCKTLEFKMFIKKLNLEEKTQ 298

Query: 296 AANIE--PVVLDI 306
            +N +  PV+L +
Sbjct: 299 TSNFDHKPVLLSL 311


>gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
 gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
          Length = 873

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 189/486 (38%), Positives = 287/486 (59%), Gaps = 23/486 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L++Y+LD  R+++    + +++              S+P   I+   V    +    
Sbjct: 406 DMSLLAYLLDPTRTNYGYLYLTERF--------------SVP--SIASGSVDVECVSMVK 449

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L +  +       E+L  +YE ++ P+I  +  ME  GI ID + L + +A     L 
Sbjct: 450 ALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTNKLAETTARFKDELA 509

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            +++ IYDL+GE FN++SPKQLG ILF K+  P   KTKTG + T A+ L+ +   ++PI
Sbjct: 510 QVQQEIYDLAGETFNINSPKQLGVILFEKMNLPVIKKTKTG-YSTDAEVLDMLR-NESPI 567

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ IL +R ++K+ STY + L   IN +T+R+HT ++   T TGRL+S +PNLQNIP++T
Sbjct: 568 VEKILAYRSVAKLVSTYLEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 627

Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           + G++IR  F        L+SADYSQIELRILAH++    L + F +  DIHR  AAE+ 
Sbjct: 628 EKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVDGKDIHRFTAAEVL 687

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G   E V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+P + EY+
Sbjct: 688 GKAQEDVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYM 747

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           ++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI + AM  
Sbjct: 748 DRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQ 807

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V + LE+    +++LLQ+HDELV EV  EE+    +++  +M+      + L VPL V++
Sbjct: 808 VEQKLEEGNFKSRLLLQVHDELVLEVVNEELEAVEELLRSTMQSV----VELHVPLIVDV 863

Query: 967 KVSNNW 972
             + NW
Sbjct: 864 HHAENW 869



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 173/295 (58%), Gaps = 10/295 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    E    + AV FD
Sbjct: 4   LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + + 
Sbjct: 59  KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                  AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++ +
Sbjct: 119 KFGTPEMAVKIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GDS DNIPG+PG+G KTA  L+ EYGNLE++  +   I  KK +E ++E  + A L
Sbjct: 179 KALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVENKDLAFL 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           SR+L  ++TD+ ++  +E  + ++ +   +    + L FTKL  R+      + A
Sbjct: 239 SRELATIKTDMDLSYKVEDFV-QNFHTSEVQPLFETLGFTKLTPRIVQVMGGEEA 292


>gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
 gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
          Length = 885

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 180/493 (36%), Positives = 278/493 (56%), Gaps = 29/493 (5%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           F D+ L +YVLDS  S +D + +A+ +L            +  P++   D  V + A   
Sbjct: 416 FFDVTLAAYVLDSSVSRYDFSYLAETYL----------EGALAPVEDDDDRLVMQAAC-- 463

Query: 546 SNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
                 L  L+ P    L+ +    VY+ +D P++ V++ ME  G  +D D L+ + +  
Sbjct: 464 ------LRALIDPMSQALVADGTKGVYDTIDLPLVPVLAHMERIGALLDTDTLQALGSRT 517

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           ++N+  + E IY+L+GEKFN+ SP+Q+  ILF  +  P   +T  G + T A+ LE ++ 
Sbjct: 518 AQNIADISERIYELAGEKFNIDSPQQVSHILFDVIGLPPRKRTSRG-YSTDAKVLEDLSS 576

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            ++ +   ILE+R+L+KI  TY D+LP  +     R+HT ++   T TGRL+S  PNLQN
Sbjct: 577 -EHQLPGLILEYRELAKIMGTYIDALPK-LRGADGRLHTSFNETVTTTGRLSSSNPNLQN 634

Query: 723 IPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           IP++T+ G+ IR  FI   P    +SADYSQIELR+LAH++    L   F +  D H   
Sbjct: 635 IPVRTEFGRHIRECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFHSAT 694

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AA +FGV +E+V+P++R  AK +NF I+YG   F L+  LRIP  EA   I RYF  +P 
Sbjct: 695 AARVFGVPVEEVTPELRSRAKAVNFGIVYGQQAFGLSQSLRIPFGEAQAMIDRYFTAYPV 754

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y++       + GY  T+FGR+ H  E+ +  +  R   ER A+N P+QG+AADI +
Sbjct: 755 VRAYLDNIVAQAHEKGYALTMFGRKRHIPELRAHNAQQRAFGERIAMNHPMQGTAADIIK 814

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           +AM+ V   L       KM++Q+HDEL   VP +++   S ++   ME      + L VP
Sbjct: 815 KAMVEVDARLRHEFPNAKMMIQVHDELDLSVPADQVGEVSALLKEVMENV----VELDVP 870

Query: 962 LKVNIKVSNNWQE 974
           L V+++ + NW E
Sbjct: 871 LIVDVQSAKNWAE 883



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 150/284 (52%), Gaps = 9/284 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S ++RA++A P      DG P NA+ GF +M  K +  +  +++       FD  
Sbjct: 7   VIDGNSLMHRAYHAVPPTMNAPDGTPTNAVFGFLSMFLKFIDIAHPDAVV----CAFDVG 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R      YKA RP + + L  Q P+V     A GIPA+++ G+E DDI+ T     
Sbjct: 63  KPQHRIAALEQYKAQRPPMDDDLRVQFPVVEQVLAAMGIPAVKVPGWEGDDILGTIAARG 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMVCLQA 184
           +  G+   +++ DKD  QL S  T + +T +        D   V +K+G+ PE++     
Sbjct: 123 DAAGYDTLLVTGDKDACQLASDHTRIVNTKRGISDVVIFDPAGVEEKYGVSPEQIPDFLG 182

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PGIG KTAA LLQ +G++E I  +   +K  K++E+I +  + A LSR
Sbjct: 183 LMGDSSDNIPGVPGIGPKTAAKLLQRFGSIEGIYEHLDELK-GKQQESIRDNRDAAFLSR 241

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            + +++ D+   + LE+L     N   + +  + L     + RV
Sbjct: 242 DVAIIKCDLDFELDLENLTFPSFNEEAVTAAFEKLGMRAHLGRV 285


>gi|332674238|gb|AEE71055.1| DNA-directed DNA polymerase I [Helicobacter pylori 83]
          Length = 893

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 281/992 (28%), Positives = 459/992 (46%), Gaps = 128/992 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYA----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y      PL + K  G P   + G   M+ K  ++ +     
Sbjct: 7   KEETLALIDTFAYLFRSYYMGAKNKPLTNVK--GFPTGLLTGLVGMVKKFYKDKKN---M 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
                  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 62  PFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIVLFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
              +A LS++L  L         ++      C  P     LK  +  K    ++T  D +
Sbjct: 237 DKGSAFLSKELATLERGC-----IKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLE 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +   P++LD NT       +E     D   K S+   L       N+E  P   FLE+L
Sbjct: 292 NSPT-PLILD-NTP-----LLENTPASDNAPKKSRMIVLE------NTE--PLSAFLEKL 336

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K      N   + ++V  K+                            K +A+A    D
Sbjct: 337 KK-----TNARIFMRLVLDKE---------------------------KKVLALAFLYED 364

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473
           Q      + E +F   S+   Q++                FF+  +H   IGH++K    
Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHVQIIGHDLKPLLS 407

Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIP 529
            +  +Y +S+     +D  +++++ +  +   D              E+LK   ++  I 
Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEELIL 453

Query: 530 IDKISDSQVQEHAIENS------NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            +KI D + +  A ++       N + +L        + E LL +   ++ P + V+  M
Sbjct: 454 HEKIKDFKTKSKAEKSEQLDRELNALRRLCEYFEKGGLEEGLLALAREVETPFVKVLMDM 513

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G +ID    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P   
Sbjct: 514 EFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGTDFNLNSPKQLSEILYEKLELPKN- 572

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           K+ +   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +
Sbjct: 573 KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 626

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762
               T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH +
Sbjct: 627 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFS 686

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L 
Sbjct: 687 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 743

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP +EA  Y + YF RFP I +Y+ + K  + +     T+ GR   +D        I+  
Sbjct: 744 IPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGVNDYIKGN 802

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q
Sbjct: 803 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALELQQ 861

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   +     P   LRVPL+ +  ++  W E
Sbjct: 862 EIQRILNDEVYP---LRVPLETSAFIAKRWNE 890


>gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13]
          Length = 851

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 167/417 (40%), Positives = 256/417 (61%), Gaps = 9/417 (2%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           KL  E L  + E ++ P+++V++ ME TG+ +DQD +++    +S  +  LEE IY L+G
Sbjct: 436 KLEAEGLTRLMEEIELPLVEVLASMEHTGVLVDQDGVRRFGDALSGEIRQLEEEIYTLAG 495

Query: 619 EKFNLSSPKQLGDILFTKLKFP---SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           ++FN++SPKQLG +LF  L+ P      KTKTG + T A+ LE++  G  PI+  IL +R
Sbjct: 496 KQFNIASPKQLGQVLFEDLEIPHPQGKKKTKTGSFSTNAEVLEKLR-GAYPIVSLILRYR 554

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           QL+K+ STY   L   +     R+HT +    T TGR++S EPN+QNIP++T+LG+++R+
Sbjct: 555 QLTKLNSTYVAGLLKTVAP-DGRIHTCFKQTETRTGRISSTEPNMQNIPVRTELGKEMRK 613

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F++P  + L+ ADYSQIELRILA++ +   + Q F +  DIH   AA++FGV  E V+P
Sbjct: 614 FFVAPRGRILLDADYSQIELRILANLCEDANMQQAFLSGADIHASTAAQVFGVPREAVTP 673

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           QMR  AK +NF IIYGI  + L+  + +   EA  YIKRY   FP + +++ +      +
Sbjct: 674 QMRSAAKAVNFGIIYGIGAYSLSQDIGVSVREADRYIKRYLENFPRVEQFMTRIVEDAER 733

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            G+V T+FGRR    E+ S     +    R A+N PIQG+AADI + AMI V++ L   +
Sbjct: 734 TGFVSTLFGRRREVPELKSHNKIQQAAGRRIAMNTPIQGTAADIIKIAMIRVYRRLAREQ 793

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L  +++LQ+HDEL+ E   ++   A+ I+   ME A     ++ VPL   +    +W
Sbjct: 794 LDARLILQVHDELIVEAAVQDADRAAVILREEMEHAW----DMAVPLTAEVGKGESW 846



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 118/213 (55%), Gaps = 7/213 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L  +DG+S + RAFY   +L+    G+P NA+ GF N+  K     + + +A    V FD
Sbjct: 3   LLAIDGNSILNRAFYGIRMLTSSK-GVPTNALFGFFNIYLKEAAQVQPDGVA----VAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR++    YKANR  +PE L  QL  V+   +  G+  +E +GFEADDI+ T   
Sbjct: 58  LRSPTFRHKAVASYKANRKGMPEELAQQLAPVKELLRGMGVTVLEAEGFEADDILGTLAR 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVCLQA 184
           I  + G    I++ D+D +QLV     +     +E I    E   +++G  P  ++ L+A
Sbjct: 118 ICTEHGEDCVILTGDRDSLQLVGEHVRVDLATNKETIPYTEERFREEYGFAPVHLIDLKA 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
           L GDS DNI G+PGIG KTA  L+Q YG +E +
Sbjct: 178 LMGDSSDNIKGVPGIGPKTATGLIQTYGTIEEL 210


>gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
 gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
          Length = 956

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 206/562 (36%), Positives = 323/562 (57%), Gaps = 41/562 (7%)

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS 498
           +G N   + +L  L+    ++ + K+  N K+D  V +  GI+++G   D M+ SYVL  
Sbjct: 407 SGDNLNLEIVLEKLRPILASDDYPKVFQNAKFDIDVFYHQGITVKGLVFDTMVASYVLHP 466

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK-ISDSQVQEHAIENSNVILQLWLLLR 557
              +H++  +  ++L  T    L  +   IP  K I+D  +   A     +      LLR
Sbjct: 467 -ELTHNLEDLCDRYL--TGITSLSYKSLGIPAGKTIADLDIPTTA-NYCGLDAYATYLLR 522

Query: 558 PKLIVE-----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            KL  E      L  ++  ++ P++ V+ QME  GI+I+ + LK  S ++ ++L  +E+N
Sbjct: 523 EKLQAELTKIPPLYQLFSEIESPLVMVLWQMENYGIKININYLKNFSQQLERDLAYIEKN 582

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
            Y+  GE FNLSSPKQL +ILF +L        KTKTG + T    LE++  GD+P++  
Sbjct: 583 AYESIGETFNLSSPKQLSEILFDRLALNRKKSRKTKTG-YSTDQSVLEKLQ-GDHPLVDY 640

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           ILE R LSK+KSTY D+LP     +T RVHT ++   T TGRL+S  PNLQNIPI+++  
Sbjct: 641 ILEHRTLSKLKSTYVDALPKLAEPKTARVHTDFNQTITSTGRLSSSNPNLQNIPIRSEFS 700

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           ++IR+AFI      L+SADYSQIELRILAH+++   L + + ++ D+H++ A  +F  + 
Sbjct: 701 RRIRQAFIPENGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLF--DK 758

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            +++P+ R   KTINF +IYG+   + A + ++   +   +I++Y  R+  + EY+E +K
Sbjct: 759 REITPEERSLGKTINFGVIYGMGAQKFARESKLTVEQGRKFIEKYHQRYAQVFEYLENSK 818

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNI-------------NE-----RAAINAPI 892
                 GYVETI GRR +++  N     +R +             NE     R+A NAPI
Sbjct: 819 KQAITQGYVETILGRRRYFNFDNPLLKRLRGLSLHDIDLDSLKLNNEEAQLLRSAANAPI 878

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGS+ADI + AM+ + + L++++   ++LLQ+HDELV EVP EE  +    I  +ME+A 
Sbjct: 879 QGSSADIIKVAMVKLAEVLQNYR--ARLLLQVHDELVLEVPREEWPSLESKIKTTMEEA- 935

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              ++L +PL V IK  +NW E
Sbjct: 936 ---VSLTIPLLVEIKAGDNWME 954



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 161/305 (52%), Gaps = 26/305 (8%)

Query: 3   KENHLF-LVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           ++N LF L+DG S  +RA+YA       PL  R   G+P +   GF N L +LL+  +  
Sbjct: 5   EQNKLFILIDGHSLAFRAYYAFAKSRSGPL--RTSTGIPTSVCFGFLNSLMQLLETQK-- 60

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              ++ AV FD  A +FR+E   +YKANR + PE   P L  ++    A  IP +   G+
Sbjct: 61  --PTYLAVAFDLAAPSFRHEADANYKANRQETPEEFRPDLTNLQSLLAAMNIPIVTSPGY 118

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLY---DTVKE------EKI 163
           EADD++ T    A   G+ V I++ D+DL QLV     TT LY   + VK        + 
Sbjct: 119 EADDVLGTLAKQAGDHGYTVKILTGDRDLFQLVDEEKKTTVLYLDINAVKSTSGQGYTEF 178

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           + + V +K G+ P+++V  +AL GD  DNIPG+ GIG KTA  LL++Y NL++I  N   
Sbjct: 179 NSQAVTEKLGVTPKQVVDFKALCGDKSDNIPGVRGIGEKTAIDLLKKYDNLDDIYTNLES 238

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           IK   + + +LE    A  SR L  +  D P+++  E   L   N   +   L  LE  K
Sbjct: 239 IKGMVKTK-LLEGKTAAESSRYLAKIALDAPVSLEEEKFRLRGFNRRLVQPLLARLELKK 297

Query: 284 LINRV 288
           ++ ++
Sbjct: 298 ILQKL 302


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 219/562 (38%), Positives = 326/562 (58%), Gaps = 50/562 (8%)

Query: 445 LTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502
           L+KE +L  L+   EN+ + K+  N K+D+LVL   GI + G   D ML SYV++  +S 
Sbjct: 410 LSKEKVLEKLRPILENKCYPKVFQNAKFDRLVLLNQGIQLNGVVFDTMLASYVINPDKS- 468

Query: 503 HDIASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           H ++S+ +++L+    +    LK  K     D +  +QV  +   ++     L   L+ +
Sbjct: 469 HKLSSLCKQYLTNISSQDYLELKINKQQTIAD-LDITQVANYCGMDAYSTFLLVKPLKKR 527

Query: 560 L----IVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           L    I+EKL L V + L+K    V+S+ME  GI ID + L  +S +   NLL LEE IY
Sbjct: 528 LAEIPILEKLFLEVEQSLEK----VLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEKIY 583

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQDLEQINCGDNPIIKNILE 673
           + + EKFNL SPKQL  ILF  L+  +    K T  + T    LE++  GD+PII  +L+
Sbjct: 584 EEAKEKFNLESPKQLSKILFENLQLSTKKSKKITTGYSTNHAILEKLK-GDHPIIDYLLK 642

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           +R LSK++STY D+LP  ++ +T R+HT ++ + T TGRL+S +PNLQNIPI+T+L +KI
Sbjct: 643 YRTLSKLQSTYIDNLPTLVSNQTHRIHTSFNQSVTSTGRLSSSKPNLQNIPIRTELSRKI 702

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R+AFISP    L+SADYSQIELRILAH+++   L + + +  DIH + A  +F  + E++
Sbjct: 703 RKAFISPKKWLLVSADYSQIELRILAHLSQEPLLVKAYCDCQDIHTLSAQLLF--DKEEI 760

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           + + R   KTINF +IYG+   R A +  +  ++  D+IK+Y  R+  + +++E  K   
Sbjct: 761 TIEERNLGKTINFGVIYGMGSQRFAREAGVTPTKGKDFIKKYHQRYKKVFQFLENLKIEA 820

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINE---------------------RAAINAPI 892
              GYV TI GRR ++   N    S+RN+                       R+A NAPI
Sbjct: 821 ITKGYVTTILGRRRYF---NFYSDSLRNLYGCNPDEINLDELKYSYSDSQLLRSAANAPI 877

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGS+ADI + AMI + K L +++   K+LLQ+HDELVFE+P EE+      I   ME + 
Sbjct: 878 QGSSADIIKVAMIKIEKLLRNYQ--AKLLLQVHDELVFEIPLEELEELQSEIKQIMENS- 934

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L +PL V I    NW E
Sbjct: 935 ---VKLTIPLLVEINSGINWME 953



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 150/298 (50%), Gaps = 29/298 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L L+DG S  +RA+YA  L SR+       G+P +   GF N L ++++  +      + 
Sbjct: 10  LILIDGHSLAFRAYYAF-LNSRRGLLKTSTGIPTSICFGFLNSLMQVIKVEK----PKYV 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A+ FD    TFR++    YKA RP+ PE  +  +  ++   +   +  I + G+EADDI+
Sbjct: 65  AIAFDSKEKTFRHKFDVSYKAGRPETPENFIVDIKNLQKVLEILNLFTITMPGYEADDIL 124

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLY------DTVKEE---KIDIEHVI 169
            T    A  +G+ V I+S DKD  QL+S     + LY      ++  E+   +I  + VI
Sbjct: 125 GTLATEASNKGYRVKILSGDKDTFQLISDEQNISVLYLGRSGVNSSSEKGYTEIISKTVI 184

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---Q 226
           ++ GI   ++V  +AL GD  DNIPG+ GIG KTA  LL EY  +E+I  N   IK   Q
Sbjct: 185 ERLGIASFQVVDYKALCGDKSDNIPGVKGIGEKTAVKLLTEYKTIESIYENIEHIKGANQ 244

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           KK +E   E    A  SR L  + T+ P+   ++   L   +     +  + LE  K 
Sbjct: 245 KKLKEGKSE----AEHSRYLAKIITNCPLVFNIDEFKLVGFDQATAQNIFEKLELKKF 298


>gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
 gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
          Length = 930

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 196/524 (37%), Positives = 300/524 (57%), Gaps = 24/524 (4%)

Query: 465 IGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLD-SGR-SSHDIASIAQKWLSYTRKEIL 521
           + H++K    +L      + G   D ML +Y+L   G+    D+A  A      TRK +L
Sbjct: 415 VAHDVKSLARLLRTLDAPLAGVLGDTMLAAYLLGQEGKLEVEDVAGAAVGAELPTRKSLL 474

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH---------VYERL 572
            S +S I  + +  S     A   +  +L  W    P+L  E+L H         +++ L
Sbjct: 475 GSGRSKIGFEAVDISAAAMRAGGAAAAVLASW----PRL-GEQLEHAGGDGALRKLHDEL 529

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+  +++++E  GI +D   L+ ++ E+   L  +E  +Y+L+GE+FNL SPKQLG +
Sbjct: 530 ELPLALLLAEIEEHGITLDVPYLRALADELGGQLAGIERQVYELAGEEFNLGSPKQLGHM 589

Query: 633 LFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           LF KL   +    +TKTG + T  + LE +    + II  I+E R+L K+K TY D+LP 
Sbjct: 590 LFEKLGLRADKMRRTKTGSYSTNHEILESM-AESHAIIPPIIEHRELLKLKGTYLDALPP 648

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            +N  T R+HT ++ A   TGRL+S +PNLQNIPI+ D+G++IRRAF++ P K L+S DY
Sbjct: 649 LVNPHTGRIHTSFNQAVAATGRLSSQDPNLQNIPIRKDIGRRIRRAFVAAPGKTLVSIDY 708

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR++AH++    L Q F+N +D+H   AAE+F +  E++ P  RR AK +N+ ++Y
Sbjct: 709 SQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDERRVAKAVNYGLMY 768

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G S F LA  L I R++AA Y++RYF RF  +  Y+++     R  G   T+ GRR    
Sbjct: 769 GQSEFGLAQSLGISRAQAAHYMERYFERFSTVRAYMDQVVADARAEGAAVTLLGRRRPIP 828

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           ++++     R   ER A N P+QGSAADI + AM+ V   L   +    MLL +HDELVF
Sbjct: 829 DLDARNQQRRRAAERVAQNTPVQGSAADIIKLAMLRVAAHLARGEWDASMLLTVHDELVF 888

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EV  E+  T ++ ++  ME A      L VPL  +  +++NW +
Sbjct: 889 EVVPEQAETFAKAMIAEMEGAY----ALDVPLVASAGIADNWAD 928



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/317 (38%), Positives = 168/317 (52%), Gaps = 17/317 (5%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L ++DG  +IYRA++A     +  LS K  G+P  A+  +  ML +L  + R E IA   
Sbjct: 4   LHILDGHGYIYRAYFALAGPGSQRLSTK-GGMPTAALFVYAQMLIRLFIDERPERIA--- 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD P  TFRNE+   YKA R + PE L PQLP     T+A G P I  QG EADD+I
Sbjct: 60  -VVFDPPGRTFRNELDDAYKATRRETPEDLKPQLPYFSKLTEALGWPVICEQGVEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    A  +G+ V + S DKDLMQLV     + D+++    D   V KK+G+PP K+  
Sbjct: 119 ATLVGRARAQGWDVVVYSGDKDLMQLVDEGVTVIDSLRSIVYDAARVEKKFGVPPAKLRD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-KRRENILEYAETA 240
             AL GD  DN+PG+PG+G KTAA LL  Y +++ IL +   +K K   R    E  E  
Sbjct: 179 YLALVGDVSDNVPGMPGVGAKTAAKLLGSYDSIDGILAHNEELKGKMGERFRDPEALERL 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY------DC 294
             SR+LV LR+DV     L+ L+ +   G +     + LEF  L+ R++           
Sbjct: 239 ARSRELVTLRSDVATDAELDALVQQPWEGAQAEELFRELEFETLLERLSAARPDVPSPSG 298

Query: 295 DAANIEPVVLDINTTEN 311
           DAA   P   D N  + 
Sbjct: 299 DAAATGPKGNDANADDG 315


>gi|303232660|ref|ZP_07319345.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
 gi|302481146|gb|EFL44221.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
          Length = 1126

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 176/500 (35%), Positives = 291/500 (58%), Gaps = 13/500 (2%)

Query: 480  GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
             +++    D  L +Y+L+S  +S+D+  +  ++    SY ++ I  +       D    +
Sbjct: 633  AVAIDAVFDTQLAAYLLNSDAASYDVDELLMQYAGVASYPQQPIGSAAAHGFATDDDQKA 692

Query: 537  QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +  A   +  +LQ  L+    L++++   VY  ++ P+I V+  ME TG+ +D D+L 
Sbjct: 693  LSEMLACAKAQRVLQAPLMY--ALMLDESYDVYCGIELPLICVLLDMERTGLHVDTDILH 750

Query: 597  QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTA 654
            + S  I++ +  +   ++   GE  N+ SP QL  +LF   + P+    KTK G + T A
Sbjct: 751  EQSMAINREINHMLATLHTDIGETINIDSPMQLSHVLFDVWQLPTKGLKKTKRGYFSTNA 810

Query: 655  QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            + LE ++  D+ + + IL++R+ +K+KSTY D+LP  I K   R+HT ++     TGRL+
Sbjct: 811  KTLETLSKQDDRV-QLILDYRERAKLKSTYLDALPAQI-KPDGRIHTTFNQTVAATGRLS 868

Query: 715  SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            S +PNLQNIP ++ LG ++R+AF        ++ DYSQIELR+LAH+++   L   F + 
Sbjct: 869  SSDPNLQNIPTRSQLGHRVRKAFTVADDSVFLTCDYSQIELRLLAHLSQDPHLIAAFNSG 928

Query: 775  LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
             D H   A+ IFG+  + V+PQ+R  AK +NF I+YG   F LA+ L+I R+ A + I +
Sbjct: 929  ADFHAATASRIFGIEQDAVTPQLRSRAKAVNFGIVYGQQAFGLASSLKISRATAKEMIDK 988

Query: 835  YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
            YF  +P + E+++++  F R +GYV T++GR+ H + IN+    +R+  ER A+N P+QG
Sbjct: 989  YFEVYPCVREFLDESVAFARAHGYVPTMYGRKRHIEHINASNFQLRSFAERTAMNHPMQG 1048

Query: 895  SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
            SAADI + AMI V K L    L   ++LQIHDEL FEV   +    S+++  +ME     
Sbjct: 1049 SAADIIKLAMIEVEKRLRASSLRAHLVLQIHDELDFEVATADCDALSELVKDAMEHV--- 1105

Query: 955  KINLRVPLKVNIKVSNNWQE 974
             ++LRVPL  +I  ++NW +
Sbjct: 1106 -VSLRVPLIADISYASNWAD 1124



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 151/292 (51%), Gaps = 24/292 (8%)

Query: 9   LVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++DG+S ++RAF+A   P+++   DG   NA+ GF NML K+ +      I       FD
Sbjct: 105 VIDGNSLMHRAFHAVRQPMVAP--DGRATNALLGFFNMLIKMYRTFTPNGII----CAFD 158

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R ++Y  YKA RP +   L  Q P+V+    A  IP  E+ G+E DDI+ T   
Sbjct: 159 KGKPQIRIDMYEKYKAQRPPMDPSLHEQFPMVKELLSALNIPVCELAGWEGDDILGTLAK 218

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKWGIPP 176
                GF++ + + D+D+ QL S +  +  T K          E+  D+ H     GI P
Sbjct: 219 QGSASGFSMMLFTGDRDIYQLASDSVTVVSTKKGVTDVAMMTPEDVDDLYH-----GITP 273

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + +     L GD+ DNIPG+PGIG K AA L+ +YGNLE ++ +A  +   K  E++  +
Sbjct: 274 QLVPDFYGLKGDTSDNIPGVPGIGPKRAAQLIVQYGNLEAVIAHADEVP-GKMGESLRAH 332

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            + ARLS+KL  +RTD P+   +E     + +  R+     AL FT L  ++
Sbjct: 333 IDDARLSKKLATIRTDAPLDFAIERCAFPNFDCERVAQAFLALGFTSLTTKL 384


>gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150]
 gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150]
          Length = 879

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 175/406 (43%), Positives = 256/406 (63%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+ +V+++MEI GI++    L +++ E    +  L + IY+++GE+FN++SPKQLG 
Sbjct: 478 MELPLANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEFNINSPKQLGV 537

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K++ P     KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++
Sbjct: 538 ILFEKMELPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+   L+S+D
Sbjct: 598 I-LEDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTEDAVLLSSD 655

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS F L+  L I R +A +YI  YF R+PGI  Y+E      +  GYVET+F RR  
Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYINTYFERYPGIKAYMENVVREAKDKGYVETLFHRRRE 775

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   ++RN  ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE+
Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           V EVP +E+     ++  +ME A    + L VPL  +      W E
Sbjct: 836 VLEVPNDELVAMKALVKETMEAA----VELAVPLIADENDGRTWYE 877



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 166/315 (52%), Gaps = 20/315 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +  L L+DGSS  +RAF+A  L +     R ++GL  NAI GF  ML  LL+  +  
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E++ DYKA R K PE    Q P +R    A GI   ++  +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQFPYIREMLAARGIAYYDLAQY 114

Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE   E + VTI+S DKDL+QL    T +  + K     E    E+++
Sbjct: 115 EADDIIGTLAKMAENTSEDYQVTIVSGDKDLIQLTDVNTVVEISKKGVAEFEAFTPEYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +   +K+ K 
Sbjct: 175 EKMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYDHIDEMKKSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288
           +EN++   + A LS+ L  + T  PI I L+       +  +L +F   + F +  N + 
Sbjct: 235 KENLINDKDQAFLSKTLATIDTQSPIEIGLDDTAFTGPDLEKLAAFYDEMGFVQFKNALG 294

Query: 289 --ATTYDCDAANIEP 301
             A   D D A  EP
Sbjct: 295 GEAVPQDFDVAYEEP 309


>gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03]
          Length = 879

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 174/406 (42%), Positives = 256/406 (63%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+ +V+++ME+ GI++D   L +++ E    +  L ++IY+++GE+FN++SPKQLG 
Sbjct: 478 MELPLANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEFNINSPKQLGV 537

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K+  P     KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++
Sbjct: 538 ILFEKMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P TK   L+S+D
Sbjct: 598 I-LEDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTKDAVLLSSD 655

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS F L+  L I R +A +YI  YF R+PGI  Y++      +  GYV T+F RR  
Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRE 775

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   ++RN  ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE+
Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           V EVP +E+     ++  +ME A    + L VPL  +      W E
Sbjct: 836 VLEVPSDELLAMKALVKETMESA----VELAVPLIADENEGCTWYE 877



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 169/315 (53%), Gaps = 20/315 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +  L L+DGSS  +RAF+A  L +     R ++GL  NAI GF  ML  LL+  +  
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E++ DYKA R K PE    QLP +R    A GI   ++  +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLAARGIAYYDLAQY 114

Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE   E F +T++S DKDL+QL    T +  + K     E    ++++
Sbjct: 115 EADDIIGTLAKMAENTSEAFQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + V L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +   +K+ K 
Sbjct: 175 EKMGITPAQFVDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYDHIDEMKKSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288
           +EN++   E A LS+ L  + T  PI I L+    +  N  +L++F   + F    N + 
Sbjct: 235 KENLINDKEQAFLSKTLATIDTQSPIEIGLDDTAFKGPNLEKLLAFYDEMGFVHFKNALR 294

Query: 289 --ATTYDCDAANIEP 301
             A   D D A +EP
Sbjct: 295 GEAVPQDFDVAYVEP 309


>gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
 gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
          Length = 910

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 184/515 (35%), Positives = 295/515 (57%), Gaps = 11/515 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEIL 521
           K+ H+ K   L L   G ++RG   D  L +Y++  G+ S D+A +A ++L    R E  
Sbjct: 400 KVLHDAKGPILALAARGWTLRGLASDTALAAYLVLPGQRSFDLADLAVRYLRRELRAEAG 459

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            +    +  +   D      A  ++  +L L  +L  ++       +   ++ P+IDV++
Sbjct: 460 SAGDGQLSFEMAGDEATAAAAGVHARAVLDLAEVLDAEVAARGGARLLRDVELPLIDVLA 519

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI +D D L  +SAE++ ++ + E+  Y + G +FNL SPKQL  ILF +L+ P 
Sbjct: 520 AMERAGIAVDVDTLVDLSAELAAHVKATEQAAYQVVGREFNLGSPKQLQQILFEELRLPK 579

Query: 642 GAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             + KTG + T A+ L+ +     +P+++++L  R +S++K+T  DSL   ++    R+H
Sbjct: 580 TKRIKTG-YTTDAEALQNLLAQTGHPLLEHLLRHRDVSRLKAT-VDSLIPMVDAEG-RIH 636

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T ++     TGRL+S +PNLQNIPI+T  G++IR+AF+     + L++ADYSQIE+RI+A
Sbjct: 637 TTFNQMVAATGRLSSQDPNLQNIPIRTAEGRRIRQAFVVGKGYEALLTADYSQIEMRIMA 696

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + F +  D H   AA +FGV  E+V  +MRR  K +N+ + YG+S + L+ 
Sbjct: 697 HLSQDQALIEAFRSGFDFHAATAASVFGVRPEQVDAEMRRRVKAMNYGLAYGLSAYGLSQ 756

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I   EA   ++ YF RF G+ +Y+       R++GY ET+ GRR +  ++ S     
Sbjct: 757 QLGITPDEARVLMEEYFRRFGGVRDYLRTVVERARRDGYTETLLGRRRYLPDLTSDNRQR 816

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R + ER A+NAPIQGSAADI + AM+ V ++L      +++LLQ+HDELV EV   E   
Sbjct: 817 REMAERMALNAPIQGSAADIIKVAMLGVDRALRAAGAKSRLLLQVHDELVLEVAPGERAD 876

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +I+   M  A      L VPL+V++ V   W E
Sbjct: 877 VEEIVRREMGHAY----ELSVPLEVSVGVGRTWDE 907



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 154/294 (52%), Gaps = 16/294 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  YRAFYA P+ +     G P NA+ GF  ML  +L++ +     +H  V 
Sbjct: 23  RLLLLDGHSLAYRAFYALPVENFATTTGQPTNAVYGFTAMLINVLRDEQP----THVGVA 78

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YKA R   P+    Q+ L++   +A  IP +  +G+EADD+IAT 
Sbjct: 79  FDVSRETFRSAAYTEYKATRLATPDAFKGQVELIQDVLRALRIPVVTAEGYEADDVIATL 138

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
              A   GF V I + D+D  QLVS       P   + D  +     +E   +++G+ PE
Sbjct: 139 ADQAAAAGFDVLICTGDRDTFQLVSDRVTVLYPRKGVSDLARMTPAAVE---ERYGLRPE 195

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPGIG KTAA L++++G+L+ ++     +  K     + ++ 
Sbjct: 196 QYPDFAALRGDPSDNLPGIPGIGEKTAAKLIRDFGSLQELVARIDEVPGKT-GAVLRDHL 254

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            T   +R+L  L  +VP+ + L+ L L+  +   +     ALEF  L  R+  T
Sbjct: 255 ATVLRNRQLTELVRNVPLAVRLDDLRLQAWDRDAVHQVFDALEFRVLRERLYAT 308


>gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
 gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
          Length = 905

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 193/524 (36%), Positives = 293/524 (55%), Gaps = 31/524 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           KI H+ K   L L   G ++ G   D  L +Y+  SGR S D+  +A+        E+L 
Sbjct: 397 KILHDAKGPSLALAARGFTLAGVAADTALEAYLAQSGRRSFDLEPLAE--------EVLG 448

Query: 523 SRKSSIPIDK-----ISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            R S    D+      +D   + E  +  ++ +L L   LR KL       +   ++ P+
Sbjct: 449 RRLSPAGADENQGTLFADEDAEAERQMAAAHAVLDLADALRGKLAETGAEQLLTDIELPL 508

Query: 577 IDVVSQMEITGIQID----QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + V+++ME  GI ID    QDL K  S E +K +   +    +   E  NL SPKQL ++
Sbjct: 509 VGVLAEMEQVGIAIDERLFQDLEKGFSGEAAKEV---DAARAEAGVETLNLGSPKQLQEV 565

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           LF  L  P   K KTG + T A  L  +     +P + ++L WR+++++K T  + L   
Sbjct: 566 LFENLGMPKTKKIKTG-YTTDADSLAWLQAQTQHPFLDHLLRWREVNRLK-TVVEGLSKS 623

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADY 750
           ++  T R+HT Y+     TGRL+S++PNLQNIPI+T  GQ+IR+AFI+ P  + L++ADY
Sbjct: 624 VSPDT-RIHTTYNQMIAATGRLSSVDPNLQNIPIRTLEGQQIRKAFIAGPGYESLMTADY 682

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIE+RI+AH+++   L + F +  D+H  VAA++F V    V P+ RR  K +++ + Y
Sbjct: 683 SQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAVEPEHRRRIKAMSYGLAY 742

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G+S F L+ QL I   EAA  ++ YF RF G+ +Y+       R  GY ET+FGRR +  
Sbjct: 743 GLSAFGLSQQLGIETGEAAKMMEDYFQRFGGVRDYLHDLVVQARATGYTETMFGRRRYLP 802

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           ++ S     R + ER A+NAPIQGSAADI + AMI V + L + +L ++MLLQ+HDELV 
Sbjct: 803 DLASDNRQRREMAERMALNAPIQGSAADIIKVAMIRVREGLREQQLKSRMLLQVHDELVL 862

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+   E     +++   M  A      LRVPL V++ ++ NW +
Sbjct: 863 EIAPGEAPRVEELVRREMGSAA----ELRVPLDVSVGMAENWAD 902



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 155/299 (51%), Gaps = 16/299 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRA+YA      R   G P  A+ GF +ML   L++ R     +H AV F
Sbjct: 17  LLLLDGHSLAYRAYYALKEADLRTTTGQPTGAVQGFTSMLINTLRDERP----THVAVAF 72

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E +P+YKANR   P+    Q+ L+       GI  I  +GFEADD+IAT T
Sbjct: 73  DVSRQTFRTEKFPEYKANRSASPDDFKSQVGLIDELLAGLGITVIRKEGFEADDVIATLT 132

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
             A  +G+ V I++ D+D +QLV+   T LY   K    D+       V +K+ + P++ 
Sbjct: 133 TQAAADGYEVRILTGDRDSLQLVTENVTVLYP--KRGVSDLSRFTPAAVEEKYELTPQQY 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD  DN+P IPG+G KTAA  ++E+G+L  ++  A  +K K   E +  + E 
Sbjct: 191 PDFAALRGDPSDNLPNIPGVGEKTAAKWIREFGSLTELIERADEVKGKA-GETLRAHLEQ 249

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI-SFLKALEFTK-LINRVATTYDCDA 296
            RL+R+L  L  DVP+      L       P  +      LEF++ + +RVA     DA
Sbjct: 250 VRLNRELTELIKDVPLPAGPPDLAWASEGNPEAVYQLFDTLEFSRSMRDRVAPLLASDA 308


>gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I
          Length = 891

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 280/990 (28%), Positives = 457/990 (46%), Gaps = 126/990 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K    ++ 
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYRALIH 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
              +A LS++L  L         ++      C  P     LK  +  K    ++T  D +
Sbjct: 237 DKASAFLSKELATLERGC-----IKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +   P++LD     +   A+      D T K S    L            P   FLE+L
Sbjct: 292 NSPT-PLILDNAPLLDNTPAL------DNTPKKSCMIVLESAA--------PLSAFLEKL 336

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K      N   + ++V  K+                            K +A+A    D
Sbjct: 337 EK-----TNARVFARLVLDKE---------------------------KKVLALAFLYED 364

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473
           Q      + E +F   S+   Q++                FF+  +H   IGH++K    
Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLLS 407

Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIP 529
            +  +Y + +     +D  +++++ +  +   D              E+LK   ++  IP
Sbjct: 408 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEELIP 453

Query: 530 IDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +KI D + +   +E      N + +L        + E LL +   ++ P + V+  ME 
Sbjct: 454 HEKIKDFKTKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAREIETPFMKVLMGMEF 513

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G +ID    K++  E    L  LE  I +L G  FNL+SPKQL ++L+ KL  P   K+
Sbjct: 514 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEVLYDKLGLPKN-KS 572

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            +   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +  
Sbjct: 573 HSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFIQ 626

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKI 764
             T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH ++ 
Sbjct: 627 TGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQD 686

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L I 
Sbjct: 687 KDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLSETLNIS 743

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D        ++    
Sbjct: 744 LNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYVKGNYL 802

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q I
Sbjct: 803 REGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQQEI 861

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +     P   LRVPL+ +  ++  W E
Sbjct: 862 QRILNDEVYP---LRVPLETSAFIAKRWNE 888


>gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
 gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
          Length = 892

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 280/990 (28%), Positives = 457/990 (46%), Gaps = 126/990 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 8   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 64

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 65  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 122

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 123 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K    ++ 
Sbjct: 178 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYRALIH 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
              +A LS++L  L         ++      C  P     LK  +  K    ++T  D +
Sbjct: 238 DKASAFLSKELATLERGC-----IKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE 292

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +   P++LD     +   A+      D T K S    L            P   FLE+L
Sbjct: 293 NSPT-PLILDNAPLLDNTPAL------DNTPKKSCMIVLESAA--------PLSAFLEKL 337

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K      N   + ++V  K+                            K +A+A    D
Sbjct: 338 EK-----TNARVFARLVLDKE---------------------------KKVLALAFLYED 365

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473
           Q      + E +F   S+   Q++                FF+  +H   IGH++K    
Sbjct: 366 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLLS 408

Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIP 529
            +  +Y + +     +D  +++++ +  +   D              E+LK   ++  IP
Sbjct: 409 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEELIP 454

Query: 530 IDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +KI D + +   +E      N + +L        + E LL +   ++ P + V+  ME 
Sbjct: 455 HEKIKDFKTKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAREIETPFMKVLMGMEF 514

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G +ID    K++  E    L  LE  I +L G  FNL+SPKQL ++L+ KL  P   K+
Sbjct: 515 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEVLYDKLGLPKN-KS 573

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            +   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +  
Sbjct: 574 HSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFIQ 627

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKI 764
             T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH ++ 
Sbjct: 628 TGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQD 687

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L I 
Sbjct: 688 KDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLSETLNIS 744

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D        ++    
Sbjct: 745 LNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYVKGNYL 803

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      Q I
Sbjct: 804 REGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQQEI 862

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +     P   LRVPL+ +  ++  W E
Sbjct: 863 QRILNDEVYP---LRVPLETSAFIAKRWNE 889


>gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066]
 gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066]
          Length = 879

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/406 (42%), Positives = 256/406 (63%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+ +V+++ME+ GI++D   L +++ E    +  L ++IY+++GE+FN++SPKQLG 
Sbjct: 478 MELPLANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEFNINSPKQLGV 537

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K+  P     KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++
Sbjct: 538 ILFEKMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P TK   L+S+D
Sbjct: 598 I-LEDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTKDAVLLSSD 655

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS F L+  L I R +A +YI  YF R+PGI  Y++      +  GYV T+F RR  
Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFHRRRE 775

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   ++RN  ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE+
Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + EVP +E+     ++  +ME A    + L VPL  +      W E
Sbjct: 836 ILEVPRDELLAMKALVKETMEAA----VELAVPLIADENEGCTWYE 877



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 169/315 (53%), Gaps = 20/315 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +  L L+DGSS  +RAF+A  L +     R ++GL  NAI GF  ML  LL+  +  
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E++ DYKA R K PE    QLP +R    A GI   ++  +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLAARGIAYYDLAQY 114

Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE   E F +T++S DKDL+QL    T +  + K     E    ++++
Sbjct: 115 EADDIIGTLAKMAENTSEAFQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + V L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +   +K+ K 
Sbjct: 175 EKMGITPAQFVDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYDHIDEMKKSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288
           +EN++   E A LS+ L  + T  PI I L+    +  N  +L++F   + F    N + 
Sbjct: 235 KENLINDKEQAFLSKTLATIDTQSPIEIGLDDTAFKGPNLEKLLAFYDEMGFVHFKNALR 294

Query: 289 --ATTYDCDAANIEP 301
             A   D D A +EP
Sbjct: 295 GEAVPQDFDVAYVEP 309


>gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311]
 gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG
           18311]
          Length = 879

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/406 (42%), Positives = 256/406 (63%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+ +V+++ME+ GI++D   L +++ E    +  L ++IY+++GE+FN++SPKQLG 
Sbjct: 478 MELPLANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEFNINSPKQLGV 537

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K+  P     KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++
Sbjct: 538 ILFEKMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P TK   L+S+D
Sbjct: 598 I-LEDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTKDAVLLSSD 655

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS F L+  L I R +A +YI  YF R+PGI  Y++      +  GYV T+F RR  
Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRE 775

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   ++RN  ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE+
Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + EVP +E+     ++  +ME A    + L VPL  +      W E
Sbjct: 836 ILEVPRDELLAMKALVKETMEDA----VELAVPLIADENEGCTWYE 877



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 169/315 (53%), Gaps = 20/315 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +  L L+DGSS  +RAF+A  L +     R ++GL  NAI GF  ML  LL+  +  
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E++ DYKA R K PE    QLP +R    A GI   ++  +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLAARGIAYYDLAQY 114

Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE   E F +T++S DKDL+QL    T +  + K     E    ++++
Sbjct: 115 EADDIIGTLAKMAENTSEAFQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + V L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +   +K+ K 
Sbjct: 175 EKMGITPAQFVDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYDHIDEMKKSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288
           +EN++   E A LS+ L  + T  PI I L+    +  N  +L++F   + F    N + 
Sbjct: 235 KENLINDKEQAFLSKTLATIDTQSPIEIGLDDTAFKGPNLEKLLAFYDEMGFVHFKNALR 294

Query: 289 --ATTYDCDAANIEP 301
             A   D D A +EP
Sbjct: 295 GEAVPQDFDVAYVEP 309


>gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
 gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
          Length = 890

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/490 (35%), Positives = 294/490 (60%), Gaps = 11/490 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D  +  Y+L+  + ++D   +A+ +L  T   + +++     +   D + D + Q     
Sbjct: 407 DAGVAGYLLNPLKDTYDYDDLARDYLDMTVPSKADLMGKTSFTAAFDMMPD-KAQTCVCY 465

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            + V  +    L  KL    +  ++  ++ P+I  +  M+  GI + ++ L+     +  
Sbjct: 466 MAYVAWKAKPELVKKLEASGMRKLFFDIEMPVIYSLYHMQEEGICVRREELRCYGERLKV 525

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  LE+ IY  +  +FN++SPKQLG+ILF ++K P G KTKTG + T A  LE++   +
Sbjct: 526 QIDKLEQEIYQDTETEFNINSPKQLGEILFDRMKMPGGKKTKTG-YSTAADVLEKL-APE 583

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            P+++ +L++RQL+K+KSTYAD L   I +   R+H  ++   T TGR++S EPNLQNIP
Sbjct: 584 YPVVRKVLDYRQLTKLKSTYADGLAAFI-REDGRIHGTFNQTITATGRISSTEPNLQNIP 642

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           ++ +LG++IR+ F+      L+ ADYSQIELR+LAH++    L   +  + DIH + A+E
Sbjct: 643 VRMELGREIRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAITASE 702

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F V +E+V+P  RR+AK +NF I+YGIS F L+  L I R EA +YI RYF  +P + +
Sbjct: 703 VFHVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEALEYINRYFETYPEVKK 762

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +++      ++ GYVET+FGRR    E+ S     R+  ER A+N+PIQG+AADI + AM
Sbjct: 763 FLDHLVELGKEQGYVETMFGRRRPIPELKSANFMQRSFGERVAMNSPIQGTAADIIKIAM 822

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I V + L   KL ++++LQ+HDEL+ E   +E+    +++   M+ A     +L+V L++
Sbjct: 823 IRVDQRLRKEKLRSRLVLQVHDELLIETWTDELEKVQKVLEEEMKNAA----HLKVELEI 878

Query: 965 NIKVSNNWQE 974
           ++K  ++W E
Sbjct: 879 DMKTGHSWFE 888



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 161/296 (54%), Gaps = 17/296 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RAFY  P L+    GL  NA+ GF +++++++++ +    A H AV FD
Sbjct: 4   LVLIDGHSILNRAFYGVPELTNSK-GLHTNAVYGFLSIMFRVIEDEK----ADHLAVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++  YK  R  +PE L  Q+P+++    + GIP +   G+EADDI+ T   
Sbjct: 59  LKDPTFRHKMFEAYKGTRKPMPEELHEQVPVIKEVLASMGIPILTRPGYEADDILGTIAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
               +G  V+++S D+DL+QL         P T    T  ++    + V  ++ + P + 
Sbjct: 119 RCAAQGVEVSVVSGDRDLLQLADEKIKIRMPRTSRGTTEIKDYYPAD-VQAEYHVTPTEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+P IG KTA  L+  YG++EN   N   +K  + ++ + E+ + 
Sbjct: 178 IDVKALMGDASDNIPGVPSIGEKTATSLITAYGSIENAYANIDEVKPPRAQKALREHYDM 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           A++S++L  +  D  I   LE   + +   P     +K LEF  ++ +    +D D
Sbjct: 238 AQMSKELATICIDCDIDFTLEDARINNLYTPEAYQHMKQLEFKSILQK----FDAD 289


>gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629]
 gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1]
          Length = 903

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 187/498 (37%), Positives = 300/498 (60%), Gaps = 22/498 (4%)

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV---- 538
           RG + D+M+ +Y+++     +   ++A+ +L      +L S+K  +   K+  +Q+    
Sbjct: 415 RGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGL----MLSSKKDYL--GKLDFTQMMKED 468

Query: 539 QEHAIENSNV-ILQLWL---LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           ++ A++ +   +   W    +L  KL    +L +Y  ++ P++ V+  ME  GI+ D   
Sbjct: 469 EKKAVDCACYEVYTAWKSKPVLLQKLKEMDMLTLYRDIELPLVFVLYDMENEGIRADGIK 528

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK+   +++ ++  LE+ IY+ +GE+FN++SPKQLG ILF KL  P+  KTKTG + T A
Sbjct: 529 LKEYGDKLAVSITELEKKIYEAAGEEFNINSPKQLGVILFEKLGLPNEKKTKTG-YSTAA 587

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++   + PI+ +ILE+RQL+K+KSTYAD L  +I     ++HT  +   T TGRL+
Sbjct: 588 DVLEKL-APEYPIVADILEYRQLTKLKSTYADGLSGYI-ASDGKIHTTLNQTITATGRLS 645

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPI+ +LG+ IR+ F+       + +DYSQIELR+LA ++    + + F+N 
Sbjct: 646 STEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNG 705

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  A+ +F    ++V+   RR+AK +NF I+YGIS F L+  L I R EA  YI  
Sbjct: 706 QDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYIDS 765

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF ++P I E++++T    ++NGY +T+FGR     E+NS     R   ER A+N+PIQG
Sbjct: 766 YFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIPELNSSNFMQRQFGERVAMNSPIQG 825

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI VH  L D  L ++++LQ+HDEL+ E  E E       ++  +EK    
Sbjct: 826 TAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAE----KDKVIKLLEKEMRG 881

Query: 955 KINLRVPLKVNIKVSNNW 972
            +N++V ++V  +   +W
Sbjct: 882 AVNMKVSMEVGTECGYDW 899



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/255 (37%), Positives = 153/255 (60%), Gaps = 11/255 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RA++  P L+   +GL  NA+ GF N+++K+L   + +    +  V FD
Sbjct: 5   LVLIDGHSILNRAYHGLPDLTNS-EGLHTNAVYGFLNIMFKILDEEKPD----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ ++  YK  R  + E L  Q+P+++    A GI  +E +G+EADDI+ T + 
Sbjct: 60  VHAPTFRHRMFDAYKGTRKPMDEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSV 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180
            AEK G  V IIS D+DL+QL +    +     K+   +IE+     VI+K+G+ P++ +
Sbjct: 120 RAEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIENYNTADVIEKYGVTPKEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GD+ DNIPG+PGIG KTA  L+ +Y  +E +  +A  +K  +  +NI+EY E A
Sbjct: 180 DVKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRASKNIVEYWEQA 239

Query: 241 RLSRKLVMLRTDVPI 255
            +S++L  +  D P+
Sbjct: 240 LMSKELATIILDAPV 254


>gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1]
 gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1]
          Length = 850

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 177/494 (35%), Positives = 297/494 (60%), Gaps = 23/494 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D  +  Y+L+  + S++   +A  +L  +   R E++   KSS+   K +  + +E A+ 
Sbjct: 367 DASIAGYLLNPLKDSYEYNDLAADYLDLSIPSRTELIG--KSSM---KRAMEENKEKAV- 420

Query: 545 NSNVILQLWLLLRPKLIVEKLLH------VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            S +    ++  R + ++++ L       ++  ++ P+   + +ME  GI++++ LLK+ 
Sbjct: 421 -SCICYMSYVAFRSRDLLQEALEKAGMDKLFYEIEMPLTYSLYRMEDAGIRVERKLLKEY 479

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
              +   +  LE+ IY+ +GE FN++SPKQLG++LF  +K P G KTKTG + T A  LE
Sbjct: 480 GDRLKVRIAELEQKIYEETGETFNINSPKQLGEVLFDHMKIPGGKKTKTG-YSTAADVLE 538

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D P ++ IL++RQL+K+ STYAD L  +I    +R+H  ++   T TGR++S EP
Sbjct: 539 KL-ASDWPAVRLILDYRQLTKLNSTYADGLAAYIGP-DERIHGTFNQTITATGRISSTEP 596

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++ +LG++IR+ F+       I ADYSQIELR+LAH++    L   ++ + DIH
Sbjct: 597 NLQNIPVRMELGREIRKVFVPQEGCVFIDADYSQIELRVLAHMSGDQRLIGAYKQAEDIH 656

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            + A+++F V + +V+P  RR+AK +NF I+YGIS F L+  L I R EA++YI++YF  
Sbjct: 657 AITASQVFHVPLHEVTPLQRRNAKAVNFGIVYGISSFGLSEGLSITRKEASEYIEKYFET 716

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  +++      ++ GY  ++FGRR    E+ S     R+  ER A+N+PIQG+AAD
Sbjct: 717 YPGVKTFLDGLVAEAKELGYAASMFGRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAAD 776

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI V  +L    L ++++LQ+HDEL+ E   EE     +++   M+ A     +L
Sbjct: 777 IIKIAMIRVDGALRKQGLRSRIVLQVHDELLIEAYREEADQVKELLAEEMKHAA----DL 832

Query: 959 RVPLKVNIKVSNNW 972
            V L+V     ++W
Sbjct: 833 AVSLEVEANAGDSW 846



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 33/258 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DGSS    AFY          GLP N + G  +M+ KLL        A +FA  F
Sbjct: 5   RIILIDGSSMAENAFY----------GLPSNGVKGIQSMVMKLLDAKE----ADYFAAAF 50

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R E           + +  L +         + GI  ++ +G+ + DI+A+  
Sbjct: 51  DSERENGRKEFLKSAGLYEELLKQEELLKETF-----HSMGISVLDKKGYASSDILASLA 105

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEHVIKKWGIPPEKM 179
              ++E   + ++S D+ L+Q V     L       D ++ +   IE + +++G+ P  +
Sbjct: 106 KRCQEEEGEIILLSGDRKLLQAVEEHVTLKLPAVGEDGLEFKSYSIEGIREEYGLEPGDL 165

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  LT           GIG KTA  L+++Y  +ENI     +I+  + RE +    E 
Sbjct: 166 LGVFGLTE--------AKGIGEKTACDLIKKYHTIENIYQQMEKIESHRIRETLTRNKEK 217

Query: 240 ARLSRKLVMLRTDVPITI 257
            R    L  LR D  I +
Sbjct: 218 VRKKEALSALRRDCDIRL 235


>gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 880

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 174/421 (41%), Positives = 264/421 (62%), Gaps = 12/421 (2%)

Query: 561 IVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           +VEKL     + +Y  ++ P+ +V+++MEI GI++++  L+ ++ +    + +L + IYD
Sbjct: 463 MVEKLADHDQIDLYHEIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYD 522

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           ++G++FN++SPKQLG ILF K++ P     KT    +TA D+ +      PI+  IL++R
Sbjct: 523 MAGQEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYR 582

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           Q++K++STY   L ++I     ++HT Y    T TGRL+S++PNLQNIPI+ + G+ IR+
Sbjct: 583 QITKLQSTYVIGLQDYI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRK 641

Query: 736 AFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKV 793
           AF  S     L+S+DYSQIELR+LAHI+    L   F    DIH   A  +FG++    V
Sbjct: 642 AFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADV 701

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +   RR+AK +NF I+YGIS F L+  L I R +A  YI  YF R+PGI  Y+E      
Sbjct: 702 TANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREA 761

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+F RR    +INS   ++R+  ER AIN+PIQGSAADI + AMI++  +L+ 
Sbjct: 762 KDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDNALQA 821

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                KMLLQ+HDE+V EVP +E+T   +++  +ME A    ++L VPL+ +     +W 
Sbjct: 822 GGFKAKMLLQVHDEIVLEVPNDELTAIKKLVKDTMEAA----VDLAVPLRADENAGQSWY 877

Query: 974 E 974
           E
Sbjct: 878 E 878



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLEHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVIEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHVEGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN+L   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L  
Sbjct: 235 KENLLNDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSKFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 GLAS 295


>gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Streptococcus pyogenes M49 591]
          Length = 418

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 173/418 (41%), Positives = 263/418 (62%), Gaps = 7/418 (1%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           KL   + L +Y+ ++ P+ +V+++MEI GI++++  L+ ++ +    + +L + IYD++G
Sbjct: 4   KLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAG 63

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           ++FN++SPKQLG ILF K++ P     KT    +TA D+ +      PI+  IL++RQ++
Sbjct: 64  QEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQIT 123

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K++STY   L ++I     ++HT Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF 
Sbjct: 124 KLQSTYVIGLQDYI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFT 182

Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQ 796
            S     L+S+DYSQIELR+LAHI+    L   F    DIH   A  +FG++    V+  
Sbjct: 183 PSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTAN 242

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            RR+AK +NF I+YGIS F L+  L I R +A  YI  YF R+PGI  Y+E      +  
Sbjct: 243 DRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDK 302

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYVET+F RR    +INS   ++R+  ER AIN+PIQGSAADI + +MI++ K+L+    
Sbjct: 303 GYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKISMINLDKALQAGGF 362

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             K LLQ+HDE+V EVP +E+T   +++  +ME A    ++L VPL V+     +W E
Sbjct: 363 RAKCLLQVHDEIVLEVPNDELTAIKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 416


>gi|310814704|ref|YP_003962668.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753439|gb|ADO41368.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 339

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/297 (51%), Positives = 210/297 (70%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS++I+RA++A P L+RK DGLP+ A+AGFC ML + ++N+     A+H A
Sbjct: 11  KGSHLHLIDGSAYIFRAYHALPPLTRKSDGLPIGAVAGFCAMLQRYVENNNGPEAATHIA 70

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  ++TFRN+IYP+YKA+RP +PE L PQ PL R AT AF I   EI+GFEADDIIA
Sbjct: 71  VIFDKGSITFRNDIYPEYKAHRPPLPEDLRPQFPLTRAATAAFNIAYKEIEGFEADDIIA 130

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VT+IS+DKDLMQLV P  C++D +K + ID + VI+K+G+ P+++V +
Sbjct: 131 TLAREAAEAGGRVTVISSDKDLMQLVGPAVCMFDPMKNKLIDADGVIEKFGVAPDRVVDV 190

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAA L+ EYG+L+N+L NA++IKQ KRRE ++ +A+  R+
Sbjct: 191 QALAGDSVDNVPGAPGIGIKTAAQLIGEYGDLDNLLANAAQIKQPKRRETLINFADQIRV 250

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           SR+LV L   VP+   L  L+L       L+ FL  +EF  +  RVA     DA  I
Sbjct: 251 SRRLVQLDAQVPLDFTLADLVLRAPEPEVLLGFLTEMEFRNISKRVADKMGVDAPMI 307


>gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126]
 gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126]
          Length = 879

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/406 (42%), Positives = 255/406 (62%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+ +V+++MEI GI++    L +++ E    +  L + IY+++GE+FN++SPKQLG 
Sbjct: 478 MELPLANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEFNINSPKQLGV 537

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K+  P     KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++
Sbjct: 538 ILFEKMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+   L+S+D
Sbjct: 598 I-LEDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTEDAVLLSSD 655

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS F L+  L I R +A +YI  YF R+PGI  Y++      +  GYVET+F RR  
Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRE 775

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   ++RN  ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE+
Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           V EVP +E+     ++  +ME A    + L VPL  +      W E
Sbjct: 836 VLEVPNDELVAMKALVKETMEAA----VELAVPLIADENDGRTWYE 877



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 166/315 (52%), Gaps = 20/315 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +  L L+DGSS  +RAF+A  L +     R ++GL  NAI GF  ML  LL+  +  
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E++ DYKA R K PE    Q P +R    A GI   ++  +
Sbjct: 57  --PTHILVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQFPYIREMLAARGIAYYDLAQY 114

Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE   E + +T++S DKDL+QL    T +  + K     E    ++++
Sbjct: 115 EADDIIGTLAKMAENTSEDYQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +   +K+ K 
Sbjct: 175 EKMGITPAQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYEHIDEMKKSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288
           +EN++   E A LS+ L  + T  PI I L+       +  +L +F   + F +  N + 
Sbjct: 235 KENLINDKEQAFLSKTLATIDTQSPIEIGLDDTAFVGPDLEKLAAFYDEMGFVQFKNALG 294

Query: 289 --ATTYDCDAANIEP 301
             A   D D A  EP
Sbjct: 295 GEAMPQDFDVAYAEP 309


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 166/425 (39%), Positives = 257/425 (60%), Gaps = 2/425 (0%)

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           + L++   L  +L   +L  +   L+ P+I V++ ME  GI +D D       E+   L 
Sbjct: 446 LALEMAGALSGRLAGAQLSRLMRTLEMPLIPVLADMEAAGIAVDLDAFAAFLREVQGELD 505

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            L  ++Y  +G +FN+ S +QL ++LF  L  P+G KTK GQ  +TAQD+ +   G +P+
Sbjct: 506 RLTRDVYKAAGGEFNIRSSQQLAELLFGTLGLPTGGKTKGGQ-TSTAQDVLEKLSGRHPV 564

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           +  ILE+R+L K++STY + LP  ++    R+HT ++  +T TGRL+S  PNLQNIP++ 
Sbjct: 565 VDAILEFRKLEKLRSTYLEPLPRLVDG-AGRIHTTFNQLATATGRLSSSNPNLQNIPVRG 623

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           DLG+++R  F + P  +L+SADYSQ+ELR+LAH+++   L   F    DIH   A+ ++ 
Sbjct: 624 DLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYD 683

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V  ++VS   RR+AKTINF +IYG+ P +LA +LRIP +EA  +I+RYF +   + E+ +
Sbjct: 684 VAQDQVSTDQRRNAKTINFGLIYGMGPQKLAQELRIPLTEAKAFIERYFSKLQKLREFYD 743

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           + +   R+ GYV T+ GRR    EI+S  + +++   R AIN  IQGSAADI + AM++ 
Sbjct: 744 EAETTARELGYVTTMAGRRRLLPEIHSENTQLKSQARRQAINTLIQGSAADIIKLAMLAA 803

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H   E   L  +++LQ+HDEL+ EVP +    A + +   M       + L VPL V+  
Sbjct: 804 HADPELRALNARLILQVHDELLLEVPADNAPAAGERLAAIMSGVRPGGVALDVPLAVDWG 863

Query: 968 VSNNW 972
              NW
Sbjct: 864 QGENW 868



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 168/347 (48%), Gaps = 30/347 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS+FI+R FYA   + R  DG P NA+     +L +LL+  R     ++F  + D
Sbjct: 14  LWLMDGSAFIFRGFYAYQSMQRS-DGFPTNALFIVTRILLRLLREERP----TNFCFVLD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++P YK  R   PE L+ QL  ++   +A G+P +   G EADD IA+   
Sbjct: 69  GKGPTFRHELFPPYKMQRAVTPEPLVQQLDPIKRMVRALGLPLVVSDGCEADDCIASLAA 128

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEK-IDIEHVIKKWGIPPEKMVCLQA 184
               E   V I+ TDKDL Q +     L+D   KEEK + +     + G+ P +    QA
Sbjct: 129 RHRSE-RPVVIVGTDKDLKQCLHDNVVLWDPAAKEEKLVTLADFTAETGLAPARWPDFQA 187

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + GDS DNIPGIPG+G KTA  + +++G+LE+I      + +K  R     + ET  L R
Sbjct: 188 VIGDSSDNIPGIPGVGPKTAEKIFKDFGSLEDIRDRVGELPEKL-RAKFEPHLETMFLYR 246

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  L TD    + L  L +   +     + L+  E  +L   ++               
Sbjct: 247 QLTTLTTDACPEVTLPDLAVRPLDPAEAGAMLREFELRQLTRELS--------------- 291

Query: 305 DINTTENKGIAIETEIDRDTT-IKTSQFSSLSDQTSKINSEQTPQKL 350
                EN  +   T   R T+ ++ S F     +   +N+ + P KL
Sbjct: 292 --GMIENGSV---TSAPRSTSQVQASLFGDEGRRADPVNTCKDPGKL 333


>gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 514

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 195/511 (38%), Positives = 303/511 (59%), Gaps = 16/511 (3%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           I Y+   L   G + +     M+++Y L S ++  D+         Y++ E  K  K++ 
Sbjct: 13  ISYNFKALLNLGFTFKSMYMDMMIAYHLISSQTKMDVL---LPITEYSKVEA-KDFKTTF 68

Query: 529 PIDKISDSQVQEHAIENSNV---ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
               I    V E A   SN+   IL  +  +   L  E+L ++  + + P+I V+S ME 
Sbjct: 69  GKTHIETLLVDEFARYLSNIGLGILACYDEINHLLHKEELHNILIQNEMPLIPVLSLMER 128

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+ID    K  S E+ K L   E+ IY+ +GE+FN++SPKQLGDILF K+  PSG KT
Sbjct: 129 KGIKIDVSYFKNYSLELEKELAKTEKAIYEEAGEEFNINSPKQLGDILFVKMNLPSGKKT 188

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T    LE +      I + +L++R+L+K+K+TY D+LPN ++  + R+HT ++ 
Sbjct: 189 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPNLVDSNS-RIHTSFNQ 246

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S EPNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K  
Sbjct: 247 IGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDE 306

Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + +    D+H + A  IF + + + V+ + R  AK INFSIIYG + F LA +L+IP
Sbjct: 307 NLIKAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIP 366

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             +A++YIK+YF ++P +  + ++   F  ++GYV+T+FGR+ +   I+S   +I+   E
Sbjct: 367 VKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAE 426

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N  IQG+AA++ ++ M+ V++ L+D K    +LLQ+HDEL+FEV E  +   S+I+
Sbjct: 427 RMAVNTVIQGTAAEVLKKVMLKVYEVLKD-KDDIALLLQVHDELIFEVEENSVEKYSEIL 485

Query: 945 VHSMEKAC-LPKINLRVPLKVNIKVSNNWQE 974
              M+    L  +NL     +NI    NW E
Sbjct: 486 ADIMKNTVKLEDVNLN----ININTGKNWAE 512


>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
 gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
          Length = 906

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 179/525 (34%), Positives = 290/525 (55%), Gaps = 11/525 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L ++  + H  K  H+ K   L L   G+++ G   D  L +Y+   G+ + D+  +  +
Sbjct: 387 LAEWLADPHRPKAIHDAKGPMLALAARGMTLAGVTSDTALAAYLALPGQRTFDLGDLVLR 446

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +L    +E  +     + ID I+D          +  +L+L   L   L       +   
Sbjct: 447 YLHKELREHAEP-GGQLTIDGIADDDAARELAVRARAVLELAEALDRDLERRGAARLLHE 505

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V++ ME  GI +D D   Q+SA +       E+  +   G +FNL SPKQ+  
Sbjct: 506 VELPLTGVLAAMERAGIAVDVDHFIQLSASLGGQAKDTEQQAHAAVGHEFNLGSPKQVQQ 565

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPN 690
           +LF +L  P   +TKTG + T ++ L  +    D+P++++IL WR+++K+KS     +P 
Sbjct: 566 VLFEELGLPKTKRTKTG-YTTDSEALNSLRAKSDHPVLEHILRWREVAKLKSIVDSLIP- 623

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISAD 749
            +     R+HT ++     TGRL+S +PNLQNIPI+T  G++IR  F+     + L++AD
Sbjct: 624 -MAAEDGRIHTTFNQMVAATGRLSSTDPNLQNIPIRTAEGRQIREGFVVGEGYECLLTAD 682

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELRI+AH++    L + F +  D H + A+ +FG+  E++  ++R   K +N+ + 
Sbjct: 683 YSQIELRIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARIKAMNYGLA 742

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+SPF LA+QL I   EA   ++ YF +F G+ +Y++      RQ+GY ETI GRR + 
Sbjct: 743 YGLSPFGLASQLGITPDEARVLMEEYFQQFGGVRDYLQGVVRRARQDGYTETILGRRRYL 802

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            ++ S     R + ER A+NAPIQGSAADI + A + V ++L +  LA++MLLQ+HDELV
Sbjct: 803 PDLTSDNRQRREMAERMALNAPIQGSAADIIKVASLRVDRALRERGLASRMLLQVHDELV 862

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           FEV   E+    +++   M  A      LR PL+V +     WQ+
Sbjct: 863 FEVAPGELEELKELVREQMTGA----YELRAPLEVAMGTGRTWQQ 903



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 172/332 (51%), Gaps = 27/332 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG S  YRAF+A P+ +    DG P NA+ GF +ML  +L++ +     +H AV
Sbjct: 19  GRLLLLDGHSLAYRAFFALPVENFSTTDGQPTNAVYGFTSMLINVLRDEQP----THVAV 74

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y DYKA R K P+    Q+ L+     A  IP + + G+EADDIIAT
Sbjct: 75  AFDRSEPTFRHEQYADYKAGRAKAPDEFRSQVSLIFEVLDALRIPRLSVPGYEADDIIAT 134

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKM 179
               A  +G    +++ D+D  QLV+   T LY    V E  + D   V +K+G+PPE+ 
Sbjct: 135 LASQASAQGMQTLVVTGDRDAFQLVNEHVTVLYPVRGVSELVRYDPAKVAEKYGVPPERY 194

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236
             L AL G++ DN+PG+PG+G KTAA  L +YG+L+ ++ NA ++K K     RE++ + 
Sbjct: 195 RELAALVGETSDNLPGVPGVGPKTAAKWLTQYGDLDGLVRNADKLKGKAGAALREHLPQV 254

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT----- 291
               ++++    L   VP+ +    L L   +   + +    L+F  L  R+  T     
Sbjct: 255 LRNHQINK----LDCAVPLEVGPAQLRLGQWDREEIHTLFDTLQFRVLRERLYATLSAVE 310

Query: 292 ------YDCDAANIEPVVLDINTTENKGIAIE 317
                 +  +   +EP  L     E+ G A E
Sbjct: 311 PEAEEGFAVELTRLEPGALAAWLAEHAGRAGE 342


>gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 838

 Score =  324 bits (830), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 199/521 (38%), Positives = 305/521 (58%), Gaps = 33/521 (6%)

Query: 456 FFENEHFL-KIGHNIKYD-KLVLHRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQK 511
           F E E FL + G    +D K + H+ G  +R F   D+ +  Y+L+            QK
Sbjct: 346 FKEIEEFLPEKGKIYTFDLKSLYHKVGEKLRNFSFIDLSVCEYLLNP----------LQK 395

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
              Y+ K+ILK R   + ++++ D     + ++    IL        +L  E L ++YE 
Sbjct: 396 --DYSSKDILKKRLGVVSLEEVKD--YVHYTLDIGKEILN-------ELKKEGLENLYES 444

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+ +ME  G+  D++ L+    E+ +    +E+ I++++GEKFNL+SPKQL  
Sbjct: 445 IEHPLTFVLYKMEKRGVLFDKEYLENFGKELDRKSKEIEKKIFEIAGEKFNLNSPKQLSK 504

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KLK     KTK+G + T  + L  +    + I + +LE+R+L+K+ ST+   +  H
Sbjct: 505 ILFEKLKLKPLKKTKSG-YSTDVETLTALALKGHKIAELLLEYRKLTKLNSTFVKGILKH 563

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           +++   RV T +    T TGRL+S EPNLQN+P+  ++ +KIR A  +P    L+ ADYS
Sbjct: 564 MDE-DGRVRTTFIQTGTATGRLSSAEPNLQNLPVSDEISKKIRYAVTAPAGYNLVWADYS 622

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH+++   L + +    DIH   A+ +FG++ E+V  ++RR AKT+NF IIYG
Sbjct: 623 QIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFGISAEEVDERLRRIAKTVNFGIIYG 682

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +SP  L+ +L I   EA  YI RYF +FP + EYIE T     + GYV+TIFGR+    E
Sbjct: 683 MSPHGLSERLGISVEEAEKYIDRYFEKFPKVKEYIENTLREAYEKGYVKTIFGRKRPLPE 742

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           + S   +IR+  ERAA+NA IQG+AADI + AM+ ++K LE  KL   M+LQ+HDE+V E
Sbjct: 743 LKSSNKNIRSFGERAAVNATIQGTAADIMKLAMVKLYKKLE--KLGAYMVLQVHDEIVIE 800

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             EE+     +I+  +ME      +   VPL V++KV  +W
Sbjct: 801 ALEEKTEEIMKIVKETMENV----VEFSVPLTVDVKVGKHW 837



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/289 (38%), Positives = 169/289 (58%), Gaps = 9/289 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L DG+S  YRA+YA   L+    G P NAI GF  M  KL ++ +     ++ AV FD
Sbjct: 6   IYLFDGTSLAYRAYYAIKDLTTSK-GFPTNAIYGFIRMFLKLYKDFK----PNYIAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++  +YKANR   P+    QLP ++   +  GI  +E +GFEADDI+ T   
Sbjct: 61  VGKKTFRSKLLKEYKANRKPTPDSFKLQLPYIKKFLECLGITILEKEGFEADDILGTAAK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               EG+ V +++ DKD+ QL+        +  T ++E  D+    +K+GI PE++    
Sbjct: 121 KFASEGYRVFVVTPDKDMRQLIDGKISVIAINKTGQKEIYDLVSFKEKYGIEPEQIPDFF 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS+DNIPG+P IG KTA  L+ E+GNLEN+  N S++   KRRE + ++ E A LS
Sbjct: 181 GLVGDSVDNIPGVPSIGEKTAQKLIAEFGNLENLYKNLSKLTS-KRREVLEKFKEQAFLS 239

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           R+L  ++ +VPI I LE+L +++  G  L  FLK LE   +++ +   +
Sbjct: 240 RELAKIKKNVPIEISLENLKVKEPQGKCLGEFLKELEMRSIVSELKKLF 288


>gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
 gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
          Length = 879

 Score =  324 bits (830), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 174/406 (42%), Positives = 255/406 (62%), Gaps = 9/406 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+ +V+++MEI GI++    L +++ E    +  L + IY+++GE+FN++SPKQLG 
Sbjct: 478 MELPLANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEFNINSPKQLGV 537

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K+  P     KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++
Sbjct: 538 ILFEKMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749
           I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+   L+S+D
Sbjct: 598 I-LEDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTEDAVLLSSD 655

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808
           YSQIELR+LAHI+    L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I
Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS F L+  L I R +A +YI  YF R+PGI  Y++      +  GYVET+F RR  
Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRE 775

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +INS   ++RN  ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE+
Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           V EVP +E+     ++  +ME A    + L VPL  +      W E
Sbjct: 836 VLEVPNDELVAMEALVKETMEAA----VELAVPLIADENDGCTWYE 877



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 165/315 (52%), Gaps = 20/315 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +  L L+DGSS  +RAF+A  L +     R ++GL  NAI GF  ML  LL+  +  
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E++ DYKA R K PE    Q P +R    A GI   ++  +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQFPYIREMLAARGIAYYDLAQY 114

Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE   E + +T++S DKDL+QL    T +  + K     E    ++++
Sbjct: 115 EADDIIGTLAKMAENTSEDYQITVVSGDKDLIQLTDVNTVVEISKKGVAEFEAFTPDYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +   +K+ K 
Sbjct: 175 EKMGITPAQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYDHIDEMKKSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288
           +EN++   E A LS+ L  + T  PI I L+       +  +L +F   + F +  N + 
Sbjct: 235 KENLINDKEQAFLSKTLATIDTHSPIEIGLDDTAFTGPDLEKLAAFYDEMGFVQFKNALG 294

Query: 289 --ATTYDCDAANIEP 301
             A   D D    EP
Sbjct: 295 GEAIPQDFDVTYAEP 309


>gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 880

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 172/421 (40%), Positives = 262/421 (62%), Gaps = 12/421 (2%)

Query: 561 IVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           +VEKL     + +Y  ++ P+ +++++MEI GI++++  L+ ++ +    + +L + IYD
Sbjct: 463 MVEKLADHDQIALYHEIELPLANILAKMEIEGIKVNRATLQDMAEQNKAIIEALTQEIYD 522

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           ++G++FN++SPKQLG ILF K++ P     KT    +TA D+ +      PI+  IL++R
Sbjct: 523 MAGQEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYR 582

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           Q++K++STY   L ++I     ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+
Sbjct: 583 QITKLQSTYVIGLQDYI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRK 641

Query: 736 AFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKV 793
           AF  S     L+S+DYSQIELR+LAHI+    L   F    DIH   A  +FG+   E V
Sbjct: 642 AFTPSQEDAVLLSSDYSQIELRLLAHISGDEHLIAAFNEGADIHTSTAMRVFGIEKAEDV 701

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +   RR+AK +NF I+YGIS F L+  L I R +A  YI  YF R+PGI  Y+E      
Sbjct: 702 TANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREA 761

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+F RR    +INS   ++R+  ER AIN+PIQGSAADI + AMI++  +L+ 
Sbjct: 762 KDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDNALQA 821

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                KMLLQ+HDE+V EVP  E+    +++  +ME A    ++L VPL+ +     +W 
Sbjct: 822 GGFKAKMLLQVHDEIVLEVPNTELAAVKKLVKETMEVA----VDLAVPLRADENAGQSWY 877

Query: 974 E 974
           E
Sbjct: 878 E 878



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 167/304 (54%), Gaps = 23/304 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     R H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFRNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLADENTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K 
Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHVEGFKASKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286
           +EN+L   + A LS+ L  + T  PITI L+ +I    NGP + S   F   ++F +L  
Sbjct: 235 KENLLNDRDQAFLSKTLATINTTSPITIGLDDII---YNGPDVASLSKFYDEMDFVQLKK 291

Query: 287 RVAT 290
            +A+
Sbjct: 292 DLAS 295


>gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243]
 gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243]
          Length = 875

 Score =  323 bits (829), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 168/408 (41%), Positives = 249/408 (61%), Gaps = 8/408 (1%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
            Y  +D P++ V++ +E TG  +D D L ++ A     L  L   I +++GE+FNL SPK
Sbjct: 473 AYFDIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEFNLDSPK 532

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  ILF  L   +  K + G + T A  L++++  D+ +   +L +R+L+KIKSTY D+
Sbjct: 533 QLAHILFEVLGLRTLRKNQRG-YSTDAAVLKELS-NDHELPALVLRYRELAKIKSTYIDA 590

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLI 746
           LP  +     RVHT ++   T TGRL+S EPNLQNIP++T+ G++IR  F+        +
Sbjct: 591 LP-RMRADDGRVHTSFNETVTTTGRLSSSEPNLQNIPVRTEFGRQIRECFVPLEEGHAFL 649

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           SADYSQIELR+LAH++    L   F +  D H   A+ +FG+ +E VSP++R  AK +NF
Sbjct: 650 SADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVSPELRSRAKAVNF 709

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YG   F L+  L IP  EA + I+RYF  +PG+  Y+++T    ++ GY ET+FGR+
Sbjct: 710 GIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAETMFGRK 769

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            H  E+ +  ++ R   ER A+N P+QGSAADI + AM  V + + +     K+LLQ+HD
Sbjct: 770 RHIPELKAANATQRGFGERTAMNHPMQGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHD 829

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL F VPE EI   S I+   ME      ++LRVPL V++  ++NW E
Sbjct: 830 ELDFSVPEGEIEELSAIVKDVMEHI----VDLRVPLDVDVSYADNWAE 873



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 157/287 (54%), Gaps = 15/287 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI--FD 66
           ++DG+S ++RA++A P      DG P NA+ GF  ML K +       IA+  A+I  FD
Sbjct: 7   VIDGNSLMHRAYHAVPQTMNAPDGRPTNAVFGFVAMLLKFI------DIANPDALICAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR E    YKA RP + + L  Q P+V    +A  +P + I+G+E DD++ T   
Sbjct: 61  AGRPAFRMEALEQYKAQRPPMDDDLKVQFPIVEELLEAMNVPVVRIKGWEGDDVLGTIAA 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181
             E+ G+   +++ DKD  QL +  T +  T K+   D+       V++++G+ P++ + 
Sbjct: 121 RDEELGYETLLVTGDKDAYQLATDKTRIV-TTKKGITDVAIYGPAEVLERYGVRPDQFID 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L GDS DNIPG+PGIG KTAA LLQ YGNLE I  +   +K K+ +E I++  + A 
Sbjct: 180 FLGLKGDSSDNIPGVPGIGDKTAAKLLQTYGNLEGIYEHVDDLKGKQ-KEKIVDNKDMAY 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           LSR++  +  D+   + LE       +  ++    K+++F   ++RV
Sbjct: 239 LSREVATIVRDLDFPLDLEACSFPSFDSDKVTEAFKSVQFNAHLSRV 285


>gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
 gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
          Length = 903

 Score =  323 bits (829), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 186/498 (37%), Positives = 300/498 (60%), Gaps = 22/498 (4%)

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV---- 538
           RG + D+M+ +Y+++     +   ++A+ +L      +L S+K  +   K+  +Q+    
Sbjct: 415 RGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGL----MLSSKKDYL--GKLDFTQMMKED 468

Query: 539 QEHAIENSNV-ILQLWL---LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           ++ A++ +   +   W    +L  KL    +L +Y  ++ P++ V+  ME  GI+ D   
Sbjct: 469 EKKAVDCACYEVYTAWKSKPVLLQKLKEMNMLTLYRDIELPLVFVLYDMENEGIRADGIK 528

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK+   +++ ++  LE+ IY+ +GE+FN++SPKQLG ILF KL  P+  KTKTG + T A
Sbjct: 529 LKEYGDKLAVSITELEKKIYEAAGEEFNINSPKQLGVILFEKLGLPNEKKTKTG-YSTAA 587

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++   + PI+ +ILE+RQL+K+KSTYAD L  +I     ++HT  +   T TGRL+
Sbjct: 588 DVLEKL-APEYPIVADILEYRQLTKLKSTYADGLSGYI-ASDGKIHTTLNQTITATGRLS 645

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPI+ +LG+ IR+ F+       + +DYSQIELR+LA ++    + + F+N 
Sbjct: 646 STEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNG 705

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  A+ +F    ++V+   RR+AK +NF I+YGIS F L+  L I R EA  YI  
Sbjct: 706 QDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYIDS 765

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF ++P I E++++T    ++NGY +T+FGR     E+NS     R   ER A+N+PIQG
Sbjct: 766 YFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIPELNSSNFMQRQFGERVAMNSPIQG 825

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI VH  L D  L ++++LQ+HDEL+ E  E E       ++  +EK    
Sbjct: 826 TAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAE----KDKVIKLLEKEMRG 881

Query: 955 KINLRVPLKVNIKVSNNW 972
            ++++V ++V  +   +W
Sbjct: 882 AVDMKVSMEVGTECGYDW 899



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 190/372 (51%), Gaps = 34/372 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S + RA++  P L+   +GL  NA+ GF N+++K+L   + +    +  V FD
Sbjct: 5   LVLIDGHSILNRAYHGLPDLTNS-EGLHTNAVYGFLNIMFKILDEEKPD----YLTVAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+ ++  YK  R  + E L  Q+P+++    A GI  +E +G+EADDI+ T + 
Sbjct: 60  VHAPTFRHRMFDAYKGTRKPMDEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSV 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180
            AEK G  V IIS D+DL+QL +    +     K+   +IE+     VI+K+G+ P++ +
Sbjct: 120 RAEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIENYNTADVIEKYGVTPKEFI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GD+ DNIPG+PGIG KTA  L+ +Y  +E +  +A  +K  +  +NI+EY E A
Sbjct: 180 DVKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRASKNIVEYWEQA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLIL----EDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +S++L  +  D P+        L    E           K  EF  +++R       + 
Sbjct: 240 LMSKELATIILDAPVDYEFSDAKLSGGVESLYTEEAFLLCKRYEFKNMLSRFNVEAPKNN 299

Query: 297 ANIEPVVL-DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ-KLFLER 354
           A    VV+ D+ T E+     E   DR+         SL       NSE   Q  LF E 
Sbjct: 300 AEEHFVVVRDLKTAES---VFEKAKDREVAFAVVPGESLE------NSESDGQLSLFSE- 349

Query: 355 LQKLSQYPINND 366
                  P++ND
Sbjct: 350 -------PVSND 354


>gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121]
          Length = 466

 Score =  323 bits (829), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 188/456 (41%), Positives = 275/456 (60%), Gaps = 20/456 (4%)

Query: 522 KSRKSSIPIDKISDSQVQE--HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           K +K  +P D+I +  V     A+  S   +Q  L    +   E LL     L+ P+ ++
Sbjct: 22  KGKKHHVPEDEILNKHVASIIEAVSESKAEMQKQL---KEYNQESLL---ADLELPLAEI 75

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +S+ME  GI  D   L+Q+  EI + L  L +NI++ +GE+FN++SPKQLG +LF  L+ 
Sbjct: 76  LSEMEEIGIFTDVKDLQQMEKEIQEKLDVLIKNIHEAAGEEFNINSPKQLGVVLFETLEL 135

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KTKTG + T    LEQ+  G +PII  ILE+RQLSK++STY + L   I+    R+
Sbjct: 136 PVIKKTKTG-YSTAVDVLEQLQ-GQHPIIDYILEYRQLSKLQSTYVEGLQKVISD-DHRI 192

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELR 756
           HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF   PT     ++SADYSQIELR
Sbjct: 193 HTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAF--KPTSSDSVILSADYSQIELR 250

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAHI +   + + F N  DIH   A ++F V  ++V   MRR AK +NF I+YGIS + 
Sbjct: 251 VLAHITQDESMKEAFINGHDIHTATAMKVFDVEADEVDSLMRRQAKAVNFGIVYGISDYG 310

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L I R +A  +I  Y   FPG+ +Y+       +  G+VET+  RR +  +I S  
Sbjct: 311 LSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQGFVETLLHRRRYIPDITSRN 370

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            ++R+  ER A+N PIQGSAADI + AM+  +K ++      K+LLQ+HDEL+FEVP++E
Sbjct: 371 FNLRSFAERTAMNTPIQGSAADIIKLAMVQFNKEVQHTDYHAKLLLQVHDELIFEVPKDE 430

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + + S+ +   ME A    + L VPLKV+      W
Sbjct: 431 VASFSKFVEEIMESA----LKLDVPLKVDSSYGATW 462


>gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
 gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
          Length = 875

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 309/529 (58%), Gaps = 12/529 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506
           +I+   K+ FE++   K+  +IK     L RYGI +   ++D++++ Y+LD  ++S+ + 
Sbjct: 351 DIVKSFKEEFESKDVNKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSME 410

Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
               K + Y  K   +I    +S   I +  + ++  + ++      +L+  +  ++  E
Sbjct: 411 RSDPKVIGYDFKSLEDITGKGRSKKTILESDEKEIDNYIVKYMMFTNKLYEKI-SEIEEE 469

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            ++H+Y  ++ P+I V+  ME TG+ + ++ L ++       + S+E+++ +L G+K N+
Sbjct: 470 DMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKINI 529

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +S KQL ++LF  L+ P   K KTG   +T Q++ +   G + II  IL +R ++K+K+T
Sbjct: 530 NSSKQLAEVLFEDLELPVIKKNKTGP--STDQEVLEALSGRHEIIDYILRYRTIAKLKTT 587

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D + + I K   ++HT +      TGR++S  PNLQNIPI+T+ G+ IR+AF+     
Sbjct: 588 YIDGMVDLI-KEDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSQGS 646

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+ ADYSQIELR+LA +A    +   F+N  DIHR  A+E+F V+ +KV+   R +AK 
Sbjct: 647 VLLDADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTSLQRSNAKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGI  + L+  L I R EA +YI+ Y   +  I +Y+E      ++ GYVETI 
Sbjct: 707 VNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKEIKQYMEDIVAIGKEKGYVETIM 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  E+ S   ++R+  ER A+N PIQGSAADI + AM+  +  L +  L  K++LQ
Sbjct: 767 KRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEENLKAKLILQ 826

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+ + PE+E     +I+   M  A    ++L+V +K+++  ++ W
Sbjct: 827 VHDELIVDCPEDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADTW 871



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 102/290 (35%), Positives = 166/290 (57%), Gaps = 16/290 (5%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            ++DGSS ++R FYA   L+ K DG+  N + GF NM + ++     + +     V FD 
Sbjct: 6   LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMDKLNPDLVV----VCFDR 60

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              TFR+E Y +YK NR + PE L+ Q  +++   QA G+  I+++G+EADDI  T    
Sbjct: 61  KEPTFRHEKYSEYKGNRQETPEELIVQFDMLKELLQAMGVSYIDLKGYEADDIAGTLAKQ 120

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCLQ 183
           A  + + V +++ DKD +QL+   T +  T   + E KI D++ + +++GI P++M+ L+
Sbjct: 121 ASSKNYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDALKEEYGITPQQMIDLK 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD  DNIPGI G+G KTA   +Q+YG++E +  +   I  KK ++ +++  + A LS
Sbjct: 181 GLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEKIAYLS 240

Query: 244 RKLVMLRTDVPITIPLEHLILEDC-----NGPRLISFLKALEFTKLINRV 288
           R+L  + TDVP    L   +++DC     +   LI  L  LEF   I ++
Sbjct: 241 RELGTINTDVP--KDLMGFVIDDCLIKEADNEHLIEVLTKLEFNSFIKKL 288


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 321/561 (57%), Gaps = 41/561 (7%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG 499
           G N   + +L  L+    ++++ K+  N K+D  V +  GI+++G   D M+ SYVL   
Sbjct: 408 GDNLNLEIVLEKLRPILASDNYPKVFQNAKFDIDVFYHQGITVKGLVFDTMVASYVLHP- 466

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK-ISDSQVQEHAIENSNVILQLWLLLRP 558
             +H++  +  ++L       L  +   IP  K I+D  +   A     +      LLR 
Sbjct: 467 ELTHNLEDLCDRYLDGITS--LSYKSLGIPGGKTIADLDITTTA-NYCGLDAYATYLLRE 523

Query: 559 KLIVE-----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
           KL  E      L  ++  ++ P++ V+ QME  GI+I+ + LK +S ++ ++L  +E+  
Sbjct: 524 KLQAELTKIPSLYQLFSEVESPLVMVLWQMENYGIKININYLKNLSQQLERDLADIEKKA 583

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
           Y+  GE FNL SPKQL +ILF +L        KTKTG + T    LE++  GD+P+I  I
Sbjct: 584 YESIGETFNLGSPKQLSEILFDRLALNRKKSRKTKTG-YSTDQSVLEKLQ-GDHPLIDYI 641

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           LE R LSK+KSTY D+LP     +T RVHT ++   T TGRL+S  PNLQNIP++++  +
Sbjct: 642 LEHRTLSKLKSTYVDALPKLAEPKTARVHTDFNQTITSTGRLSSSNPNLQNIPVRSEFSR 701

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           +IR+AFI      L+SADYSQIELRILAH+++   L + + ++ D+H++ A  +F  +  
Sbjct: 702 RIRQAFIPEDGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLF--DKG 759

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +++P+ R   KTINF +IYG+   + A + ++   +   +I++Y  R+  + +Y+E +K 
Sbjct: 760 EITPEERSLGKTINFGVIYGMGAQKFARESKLTVEQGRKFIEKYHQRYAQVFQYLENSKK 819

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNI-------------NE-----RAAINAPIQ 893
                GYVETI GRR +++  N     +R +             NE     R+A NAPIQ
Sbjct: 820 QAIAQGYVETILGRRRYFNFDNPLLKRLRGLSLHDIDLDSLKLNNEEAQLLRSAANAPIQ 879

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GS+ADI + AM+ + + L++++   ++LLQ+HDELV EVP EE  +    I  +ME+A  
Sbjct: 880 GSSADIIKVAMVKLAEVLQNYR--ARLLLQVHDELVLEVPREEWPSLESKIKTTMEEA-- 935

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             ++L VPL V IK  +NW E
Sbjct: 936 --VSLTVPLLVEIKAGDNWME 954



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 26/305 (8%)

Query: 3   KENHLF-LVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           ++N LF L+DG S  +RA+YA       PL  R   G+P +   GF N L +LL+  +  
Sbjct: 5   EQNKLFILIDGHSLAFRAYYAFAKSRSGPL--RTSTGIPTSVCFGFLNSLLQLLETQK-- 60

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              ++ AV FD    +FR+E   +YKANR + PE   P L  ++    A  IP +   G+
Sbjct: 61  --PTYLAVAFDLAVPSFRHEADVNYKANRQETPEEFRPDLTNLQSLLAAMNIPIVTSPGY 118

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLY---DTVKE------EKI 163
           EADD++ T    A   G+ V I++ D+DL QLV     TT LY   + VK        + 
Sbjct: 119 EADDVLGTLAKQAGDNGYTVKILTGDRDLFQLVDEEKKTTVLYLDINAVKSTSGQGYTEF 178

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           + + V +K G+ P+++V  +AL GD  DNIPG+ GIG KTA  LL++Y NL++I  N   
Sbjct: 179 NSQAVTEKLGVTPKQVVDFKALCGDKSDNIPGVRGIGEKTAIDLLKKYDNLDDIYTNLES 238

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           IK   + + +LE    A  SR L  +  D P+++  +   L   +   + + L+ LE  K
Sbjct: 239 IKGMVKTK-LLEGKPAAESSRYLAKISLDAPVSLEEDKFRLRGFDRRLVKALLERLELKK 297

Query: 284 LINRV 288
           ++ ++
Sbjct: 298 ILQKL 302


>gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
 gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
          Length = 887

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 182/516 (35%), Positives = 299/516 (57%), Gaps = 24/516 (4%)

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H+ K    +L   GI++RG   D  + +Y+L  G+ ++D+  + Q+ L          R+
Sbjct: 385 HSAKETFHMLRGRGITLRGIAHDTAIAAYLLRPGQRTYDLGDVYQRHLQ---------RQ 435

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +   D++S        ++++  IL+L   L   L       +Y  L+ P++ ++++ME 
Sbjct: 436 LTTGSDQLSLLDEDTTLVDSAAAILELAEKLTEDLRAINSYELYADLELPLVTILAEMED 495

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK 644
           TGI +D D+L++   EI++ +   E+    L  E   NLSSPKQL  +LF KL+ P   K
Sbjct: 496 TGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNLSSPKQLSVVLFDKLELPKTKK 555

Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           TKTG + T A+++E +   + +P +  +L  R+  K+KST  + L   ++    R+HT +
Sbjct: 556 TKTG-YSTAAKEIETLAAKNPHPFLDQLLAHREWQKLKSTI-EGLIKTVHD-DGRIHTTF 612

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIA 762
           +     TGRL+S EPNLQNIP++T+ G++IR AF +    + L++ADYSQIE+R++AH++
Sbjct: 613 NQTVASTGRLSSTEPNLQNIPVRTEAGRRIRSAFTVGDGYECLLTADYSQIEMRVMAHLS 672

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L + ++   D+H  V + +F V I+ V+P++RR  K +++ ++YG+S + L+ QL 
Sbjct: 673 EDPGLIEAYKEGEDLHNFVGSRVFDVPIDDVTPELRRRVKAMSYGLVYGLSAYGLSNQLG 732

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP  EA   ++ YF RF G+  Y+++     R++GY  T+FGRR +  E+ S     R  
Sbjct: 733 IPAGEAKKIMESYFQRFGGVKRYLDEVVEQARRDGYTSTVFGRRRYLPELTSDNRVAREN 792

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSL----EDHKLATKMLLQIHDELVFEVPEEEIT 938
            ERAA+NAPIQG+AADI + AMI V  +L     D    +++LLQ+HDELV E+   E+ 
Sbjct: 793 AERAALNAPIQGTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIAPGELE 852

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               I+   M++A    I LRVPL+V+     NW E
Sbjct: 853 QVQAIVEEEMDRA----ITLRVPLEVSAGTGTNWDE 884



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 153/301 (50%), Gaps = 12/301 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  +     G   NA+ GF +M   +L     E   +H AV F
Sbjct: 8   LLLIDGHSMAFRAFYALPAENFSTSGGQNTNAVYGFLSMFANIL----SEEQPTHAAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E +P+YKA R   PE    Q+P+++    + GI  +    +EADDI+AT T
Sbjct: 64  DVGRKTFRTEKFPEYKAQREAAPEEFKGQVPIIQDVLGSLGIVTLTKDNYEADDILATLT 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEE---KIDIEHVIKKWGIPPEKMVC 181
             A+ E + V I++ D+D +QLV+   T LY T       +   E V  K+G+ P +   
Sbjct: 124 TQAQDE-YEVVIVTGDRDYIQLVNDDVTVLYPTRGVSTLTRFTPEEVENKYGLTPAQYPD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P IPG+G KTA   + E G+LE ++ NA  IK K   +   E  E  +
Sbjct: 183 FAALRGDPSDNLPNIPGVGEKTATKWIVENGDLEALIANADSIKGKA-GDAFRERIEQVK 241

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANIE 300
           L+R+L  + TD+ + +  + L L+  +   +      LEF   L  RV      D +  E
Sbjct: 242 LNRELTQMVTDLVLPVGPDDLELKPADVGAVAKDFDDLEFGVNLRERVLAAVPTDGSAPE 301

Query: 301 P 301
           P
Sbjct: 302 P 302


>gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
 gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
          Length = 845

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 178/480 (37%), Positives = 277/480 (57%), Gaps = 16/480 (3%)

Query: 505 IASIAQKWLSYTR-------KEILKSRKSSIPIDKISD---SQVQEHAIENSNVILQLWL 554
           +A  A + L Y R         +L   + S   DKI     +Q++ H   N+  I++   
Sbjct: 370 VADSAWEGLPYARCFDLSLGAYLLDPEQRSYSWDKIRQRHQNQLETHPDNNALSIMETGR 429

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           +LR +L   +LL + + ++ P++ V+ +ME  G+ ID +  ++   E+ + L  L   IY
Sbjct: 430 ILRRELANSELLSLMQDIELPLVGVLVRMEKRGLAIDLEAFRRFLDEVQEELDGLTHEIY 489

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           DL+G++FNL S +Q+  +LF  L+ P+G KT  G   T++Q LE +    +PII  IL +
Sbjct: 490 DLAGQEFNLRSSQQMAQVLFGDLELPTGRKTPGGVPSTSSQVLEGLR-NVHPIIPKILRF 548

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           R L K++STY + LP  ++  T R+HT ++  +T TGRL+S  PNLQNIPI+ + G ++R
Sbjct: 549 RTLEKLRSTYLEPLPQKVDD-TSRLHTHFNQLATATGRLSSSGPNLQNIPIRGEFGPRMR 607

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           + F++P   +L++ADYSQIELR+LAH+++   L + F    DIH   AA I  +  E V 
Sbjct: 608 QCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLLEAFTQGEDIHSRTAAVIMDIADEHVD 667

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            + RR AKTINF ++YG+ P +L+ +L I  +EA  +I+RYF R  G+  + E+ ++  +
Sbjct: 668 SEARRQAKTINFGLLYGMGPQKLSRELGISLNEAKTFIQRYFDRLQGVSAFYERIEDAAK 727

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           Q+GYV T  GRR    +INS  +++     R A+N  +QGSAADI + AMI      E  
Sbjct: 728 QHGYVTTWAGRRRLLPDINSRNANLAQQARRMAVNTVVQGSAADIIKMAMIEADGDTELA 787

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               ++ LQ+HDEL+ EVP E   TA + +   M        ++ VPL V+  V  NW E
Sbjct: 788 DAGARLTLQVHDELLLEVPREAAETAGKRLAAIMASVA----DMDVPLAVDWGVGTNWAE 843



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 156/281 (55%), Gaps = 9/281 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS+++Y+AFYA P L R  DG P NA+     +L +LL    +E    + A   D
Sbjct: 15  LYLIDGSAYLYKAFYAYPDLQRS-DGFPTNAL----YILTRLLLKLLQEEQPVYAAFFLD 69

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E+ P YK +RP++PE L  Q+  ++    A G+P    +G EADD+IA  + 
Sbjct: 70  GKGPTFRHELLPSYKGHRPRMPEDLAAQIGPLKTLLDALGLPNEVPEGLEADDMIACLSR 129

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEK-IDIEHVIKKWGIPPEKMVCLQA 184
              ++   + II  DKDL Q ++P  C++D + K+EK +  +   K++G  P      QA
Sbjct: 130 RF-RDQRPIVIIGGDKDLNQCLAPQVCVWDPSGKQEKLVTADSFAKQFGFAPTIWPDYQA 188

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PG+G KTA   L+ +  LE +  N  R+  K+ +E ++ + +     R
Sbjct: 189 LVGDSSDNIPGVPGVGPKTAEKWLKRFPGLETLRDNRERLSVKE-QEKLVPHLDDIFTYR 247

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           +L  LRTD      L+   ++  +   L SFL+  EF  L+
Sbjct: 248 QLTRLRTDCCAERDLDGFAVQGQDTGALRSFLQEYEFRSLL 288


>gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 893

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 257/415 (61%), Gaps = 11/415 (2%)

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           KL  +Y  ++ P++ +++ ME TG+ +++  L +  A  ++ +  +E++IY L+G +FN+
Sbjct: 484 KLTKLYGEIELPLVPILAAMERTGVAVNRAALVRALAAANERIAEIEQDIYALAGTEFNI 543

Query: 624 SSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           SSPKQLG++LF +L    P   KTKTG + T A+ LE++    +P++  +L +R  SKI+
Sbjct: 544 SSPKQLGEVLFDRLGLTSPKMKKTKTG-YSTNAEVLEEMRAA-HPVVDRVLTYRMWSKIR 601

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY + +   I   T RVHT ++   T TGRL+S +PNLQNIP++T+ G+ +R A   P 
Sbjct: 602 STYLEGIGALIRPDTGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVR-ALFEPG 660

Query: 742 TK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L+SADYSQIELRILAH++    L   F    DIH   A+E+FGV + +V+   RR
Sbjct: 661 EGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRR 720

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF I+YG+S + L+  L IPR EAA YI+RYF R+ G+  ++++       NG+V
Sbjct: 721 SAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGVRAFLDRVVADAHTNGFV 780

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T++GRR     INS     R+  ER A+N PIQG+AAD+ + AMI    +L    + ++
Sbjct: 781 TTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKIAMIRADAALRAAGVKSR 840

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LLQ+HDELV EV  +EI   ++++  +M  A      L VPL V++    NW E
Sbjct: 841 ILLQVHDELVLEVVNDEIAQVTELLTAAMSGAA----QLAVPLAVDVHTGKNWAE 891



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/250 (40%), Positives = 143/250 (57%), Gaps = 9/250 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DGSS  +RAFYA  L    H G+  NAI GF  ML KLL    KE   +   + FD  
Sbjct: 7   VIDGSSLFFRAFYALQLPPNAH-GVHTNAIHGFAMMLVKLL----KEHAPAQIVIAFDKS 61

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR  +YPDYK  R K PE L+ Q+PL++      GIP +E+  +EADDII T    A
Sbjct: 62  RTTFRTALYPDYKGTRDKTPEELIEQIPLLKELAACLGIPFVEMDDYEADDIIGTLGTQA 121

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCLQA 184
              G A  +++ D+D +QL+ P   +  T K      + D     +++G  P +++ L+ 
Sbjct: 122 AAAGAAAIVVTGDRDALQLIRPGLDVLLTKKGISDTHRYDTAVFEEEYGFAPIRLIDLKG 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PGIG KTA  LL  YG +E++L +A  +  KK   +++ Y + A LS+
Sbjct: 182 LMGDSSDNIPGVPGIGPKTATKLLLSYGTIESVLDHAEEVAGKKLSASLIAYRDQALLSK 241

Query: 245 KLVMLRTDVP 254
           +L  ++ DVP
Sbjct: 242 ELATIKCDVP 251


>gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7]
          Length = 833

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 266/925 (28%), Positives = 428/925 (46%), Gaps = 129/925 (13%)

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+IA+   +A  
Sbjct: 14  TKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEADDVIAS---LATL 70

Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190
             +   I S DKD  QL+S    L+D   E     +  ++K+GI P +    Q + GDS 
Sbjct: 71  SPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLTKDCVEKYGILPSQFTDYQGIVGDSS 128

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETARLSRKLV 247
           DN  GI GIG K A  LLQ+ G+LE I   L  A  +   K  + ++   E+A LS++L 
Sbjct: 129 DNYKGIKGIGSKNAKELLQQLGSLEKIYNHLDLAKNLLSPKMYQALIHDKESAFLSKELA 188

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
            L  +      ++      C  P                                     
Sbjct: 189 TLEREC-----IQEFDFLSCAFP------------------------------------- 206

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
            +EN  + I+ E+     I T +           + E  P  L L+    L   P ++++
Sbjct: 207 -SENPLLKIKDELKEYGFISTLR-----------DLENAPTTLILDNAPVLDSMPPSDNA 254

Query: 368 YTK-----IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            TK     + NT  +  +++KLE   +  F  +      F+ +   +A++ L Q      
Sbjct: 255 PTKSSMIVLENTASLSMFLEKLENPNARVFVRLV-----FNKEKEMLALAFLLQDQGYFL 309

Query: 423 KVE-TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK-YDKLVLHRYG 480
            +E  +F   S+   Q++  +                 +H   IGH++K     +  +Y 
Sbjct: 310 PLEEALFSPFSLEFLQNAFSQML---------------QHARIIGHDLKPLLSFLKAKYQ 354

Query: 481 ISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIPIDKISDS 536
           +S+     +D  +++++ +  +   D              E+LK   ++  I  +KI D 
Sbjct: 355 VSLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLQEDLILHEKIKDF 400

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYERLDKPMIDVVSQMEITGIQI 590
           + +  A +   + L+L  L R     EK      LL +   ++ P + V+  ME  G +I
Sbjct: 401 KTKNKAEQLERLNLELNALKRLCEYFEKGGLEENLLSLARGIEMPFMKVLINMEFQGFKI 460

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D    K++  E    L  LE  I DL GE FNL+SPKQLG++L+ KL  P     K    
Sbjct: 461 DAPYFKRLEQEFKDELKVLERQILDLIGEDFNLNSPKQLGEVLYEKLNLP-----KNKSH 515

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L +I    +P I  ILE+R+L+K+ +TY   L   +  +  ++HT +    T T
Sbjct: 516 STDEKSLLKI-MDKHPSISLILEYRELNKLSNTYTTPLL-RLKDKDDKIHTTFIQTGTAT 573

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIP+++  G  IR+ FIS   +  L+  DYSQIELR+LAH ++   L +
Sbjct: 574 GRLSSHSPNLQNIPVRSSKGLLIRKGFISSSKEYCLLGVDYSQIELRLLAHFSQDKDLME 633

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP SEA 
Sbjct: 634 AFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLSEAK 690

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI+ YF RFP I +Y+ + +  + +     T+ GR   +D  N     ++    R  +N
Sbjct: 691 SYIEAYFKRFPSIKDYLNRMREEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVN 749

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A  QGSA+D+ +  M+ V +  ++   + ++LLQ+HDEL+FE+ E+      Q I   + 
Sbjct: 750 AIFQGSASDLLKLGMLKVSERFKNDS-SVRLLLQVHDELIFEIEEKNALKLQQEIQGILN 808

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
                   LRVPL+ +  ++  W E
Sbjct: 809 HEVYA---LRVPLETSAFIAKRWNE 830


>gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
 gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
          Length = 598

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 159/409 (38%), Positives = 263/409 (64%), Gaps = 7/409 (1%)

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           ++  ++  ++ P+I  +  ME  GI+ ++  LK+    +   +  LE+ IY+ +GE FN+
Sbjct: 193 EMYSLFTDIEMPLIYSLFHMEQVGIKAERVRLKEYGDRLKVQIAVLEQKIYEETGETFNI 252

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG++LF  +K P+G KTK+G + T A  L+++   D P+++ IL++RQL+K+ ST
Sbjct: 253 NSPKQLGEVLFDHMKLPNGKKTKSG-YSTAADVLDKL-APDYPVVQMILDYRQLTKLNST 310

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           YA+ L  +I    +R+H  ++   T TGR++S EPNLQNIP++ +LG++IR+ F+     
Sbjct: 311 YAEGLAVYIGP-DERIHGTFNQTITATGRISSTEPNLQNIPVRMELGREIRKIFVPEDGY 369

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             I ADYSQIELR+LAH++    L   + ++ DIH + A+E+F   +++V+P  RR+AK 
Sbjct: 370 VFIDADYSQIELRVLAHMSGDERLIGAYRHAEDIHAITASEVFHTPLDEVTPLQRRNAKA 429

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS F L+  L I R EA +YI +YF  +PG+ E++++     ++ GY  ++F
Sbjct: 430 VNFGIVYGISSFGLSEGLSISRKEATEYINKYFETYPGVKEFLDRLVADAKETGYAVSMF 489

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR    E+ S     R+  ER A+N+PIQG+AADI + AMI V ++L+   L ++++LQ
Sbjct: 490 GRRRPVPELKSANFMQRSFGERVAMNSPIQGTAADIMKIAMIRVDRALKAKGLKSRIVLQ 549

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDEL+ E  ++E+     ++V  M+ A     +L V L+V   V ++W
Sbjct: 550 VHDELLIETRKDEVEAVKALLVDEMKHAA----DLSVSLEVEANVGDSW 594


>gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12]
          Length = 894

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 298/504 (59%), Gaps = 16/504 (3%)

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           L++ G S       M+++Y L S ++  D   I Q +L    K+I +  K+     K+  
Sbjct: 400 LYKLGFSFSKPVYDMMIAYHLVSSQTKEDYTLIGQYYL----KKIAEDEKTVFAKQKLES 455

Query: 536 SQVQEHA---IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              + +    +  + V+     +L   +  ++L  V    + P+I V++ ME  GI+ID+
Sbjct: 456 LSAEVYGDFLLNRAGVLYSCLDILEEDVKEKELEAVLWETELPLIPVLADMERIGIKIDR 515

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
              +  S E+++ L  LE+ I++ +GE+FNL+SPKQLG+ILF KL  P+G KTKTG + T
Sbjct: 516 KYFEAYSLELTEKLALLEKAIWEEAGEEFNLNSPKQLGEILFLKLNLPTGKKTKTG-FST 574

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE ++     I  N+LE+R+L+K+K+TY D +P  +     R+HT Y    T+TGR
Sbjct: 575 DVEVLEHLSSQGFQIASNLLEYRKLAKLKNTYVDPIPK-MTGEGDRIHTCYHQIGTVTGR 633

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP+KT+ G +IR+ FI+    KL+S DYSQ+ELR+LA ++K   L + ++
Sbjct: 634 LSSSDPNLQNIPVKTEEGIRIRQGFIAREGWKLLSIDYSQVELRVLASLSKDENLLKAYQ 693

Query: 773 NSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              D+H + A  IF +   E+VS + R  AK INFSIIYG +PF LA +L I   +A +Y
Sbjct: 694 EKQDLHSVTAKRIFELQEDEEVSREQRIMAKIINFSIIYGKTPFGLAKELGISVKDAGEY 753

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           IKRYF ++P + ++  +   F  ++GYVET FGRR   D I+S    +++  ER A+N  
Sbjct: 754 IKRYFAQYPRVAQFERQVITFAEEHGYVETYFGRRRIIDGIHSKNKMVKSQAERMAVNTV 813

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AA+I ++ MI ++  L   K    +LLQ+HDEL+FE+ E ++    + ++  M + 
Sbjct: 814 VQGTAAEILKKVMIKIYSWL-SQKTDIHLLLQVHDELIFEIQEGKLQEYEENLIRFMRET 872

Query: 952 CLPKINL-RVPLKVNIKVSNNWQE 974
               I L  V L+VN  + + W E
Sbjct: 873 ----IQLEEVELEVNTNIGDTWAE 892



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/288 (34%), Positives = 149/288 (51%), Gaps = 11/288 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D S+ +YRA+YA   +  K   +P  A+ GF   L++LL+    E +A+ F +   +
Sbjct: 5   LLLDVSAMMYRAYYANMNMRTKE--MPTGAVYGFLLSLFQLLKEYESEYMAAAFDIKRSH 62

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R E+Y +YK+NR   PE L+ Q+P +     AFGI  I+I G+EADDI+ + +  
Sbjct: 63  LK---RTELYAEYKSNRDTTPEDLVKQIPYIEAILDAFGIQRIKIDGYEADDILGSLSTK 119

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
             K+G  VTI++ DKD+ QL+   T +Y   KE     E V     + PEK+  L  L G
Sbjct: 120 LSKKGIPVTIVTGDKDISQLLDENTEIYLLGKEVLKTREDVKNYIDVYPEKIPDLFGLIG 179

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEYAETARL 242
           DS D IPG+  IG K A  +L++YGNLE I  N  ++ +     K   + + E  E A L
Sbjct: 180 DSSDCIPGVRKIGPKKAVPMLEKYGNLEGIYENIDKLSELPGVGKTLIQIMKEDKELAFL 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           SR L  +  ++     LE L  E      L    + LEF   + R+ +
Sbjct: 240 SRSLAKIERNLDFPFSLEELQFEKKE-EALREIFQKLEFKSFLKRLGS 286


>gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
 gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
          Length = 857

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 176/506 (34%), Positives = 289/506 (57%), Gaps = 26/506 (5%)

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           HN K     L R G   R   D ML +Y+L+   S             Y+ K + +   +
Sbjct: 373 HNSKPLFAWLDRMGGEARVSYDAMLAAYLLNPNASD------------YSLKRLQEEAGT 420

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           + P       +++      + V+ ++       L+      + E ++ P+  V+++ME  
Sbjct: 421 AAP-------KLENETAWQAAVLPRVKNWQAASLLANGQRKLLEEMEIPLAQVLARMENI 473

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G  +D + ++     +   + +L++ IY+  G +FN++SPKQLGD LF KL  PSG KTK
Sbjct: 474 GFLVDGESIRVYGERLETEIEALQKQIYEEVGYEFNINSPKQLGDALFVKLGLPSGKKTK 533

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T A+ LE++   D+P ++ +L +R L+K+KSTY + +   I     R+H+ ++  
Sbjct: 534 TG-YSTNAEILEKLRY-DHPAVELVLHYRTLTKLKSTYCEGMLKVIGP-DGRIHSNFNQT 590

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGR++S EPNLQNIP++T+LG+++R+ F++     L+ ADYSQIELR+LAHIA    
Sbjct: 591 ETRTGRISSTEPNLQNIPVRTELGRELRKFFLAKEGWVLVDADYSQIELRVLAHIAHDEN 650

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F++  DIH + A+++FG+  E V+P MR  AK +NF I+YGI  F L+  + + R 
Sbjct: 651 MIKAFQDKEDIHTITASQVFGMPPEMVTPLMRSRAKAVNFGIVYGIGAFSLSKDINVSRK 710

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI  Y   + G+  Y+++     +++GYVET+F RR +  E+ +   ++R   ER 
Sbjct: 711 EAQRYIDDYLTLYSGVDRYMKEVVEKAKEDGYVETLFHRRRYLPELTASNFNLRAFGERV 770

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A N PIQG+AADI + AM+ V + L+   +  +++LQ+HDEL+ E PE+E   A++I+  
Sbjct: 771 ARNMPIQGTAADIIKIAMVRVDRRLKRENMRARLILQVHDELIVEAPEDEAEQAARILTE 830

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972
            ME A    ++L VP+     V   W
Sbjct: 831 EMEGA----VSLTVPMVAEASVGKTW 852



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 165/311 (53%), Gaps = 32/311 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S + RAFY   +L+ K +GL  N I GF  ML +L    R E   +  AV FD
Sbjct: 3   LLILDGNSILNRAFYGIKVLTTK-EGLYTNGIYGFLTMLQRL----RDEVDPNAVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ Y  YKANR  +P  L  QLP+++    A G   +E  GFEADDI+ T   
Sbjct: 58  RKEPTFRHKAYDGYKANRRGMPPELAQQLPILKELLTALGYRLVECPGFEADDILGTLAA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPT--------------TCLYDTVKEEKIDIEHVIKKW 172
            AE+ G    I + D+D +QLVSP                 LYD  K        +++ +
Sbjct: 118 QAERTGNDCVIATGDRDSLQLVSPAVTVRLAATKMGRPEVTLYDEAK--------IMEVY 169

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-RE 231
           G+ P++++ ++A+ GDS D IPG+ GIG K AA L+Q Y +++ +  +   ++ K+  R 
Sbjct: 170 GVTPKELIEIKAIQGDSSDCIPGVKGIGQKGAAELIQRYHSVQYLYDHIDELEIKEGLRT 229

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +    E+ARLSR L  +RTD P+ + LE   L + +    +  +  LEF  LI+++   
Sbjct: 230 KLKAGEESARLSRMLGTIRTDAPVDLNLEDYRLGEGDRKEALRLMAKLEFFSLIDKMGLR 289

Query: 292 YDCDAANIEPV 302
            + D    EPV
Sbjct: 290 REGD----EPV 296


>gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
 gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
          Length = 878

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 182/492 (36%), Positives = 284/492 (57%), Gaps = 16/492 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + +Y+L+     +   +IA+ +L  T    L S K  +  D+++             
Sbjct: 396 DIGVAAYLLNPMEDVYSYDAIARDYLGAT----LPSEKELVGKDELNLFSFTNETFRKLF 451

Query: 548 VILQLWLLLRPKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
               L   L   L++E+L       +Y  ++ P +  +  ME  GI++D+  L   S ++
Sbjct: 452 AYKALIPYLAGDLLMERLEKQEMFTLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKL 511

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              +  L   I   +G++FN++SPKQLG ILF  +    G KTKTG + T+   LE+I  
Sbjct: 512 QSRIDELHTEIIGYAGKEFNINSPKQLGVILFEDMGLSGGKKTKTG-YSTSVDVLEKIK- 569

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D+PII  ILE+RQL+K+ STYA  L  +I++   R+H  ++   T TGR++S +PNLQN
Sbjct: 570 NDHPIIPAILEYRQLTKLNSTYAQGLTAYISE-DGRIHGTFNQTITATGRISSTDPNLQN 628

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP+K +LG+ IR+AFI       + ADYSQIELR+LAH+++   +   F N +DIH   A
Sbjct: 629 IPMKLELGRLIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAFLNHVDIHATTA 688

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+F V I++V+   RR+AK +NF I+YGIS F L+  L I R EAADYI++YF  +  I
Sbjct: 689 SEVFDVPIDQVTSLQRRNAKAVNFGIVYGISAFGLSEDLGISRKEAADYIEKYFATYKNI 748

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             ++++     + +G V T+FGR     E+ S     R+  ER A+N+PIQG+AADI + 
Sbjct: 749 KSFLDRQVEEAKADGVVRTMFGRIRPVPELRSSNFMTRSFGERVAMNSPIQGTAADIIKI 808

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM  V+  L+   L ++++LQIHDEL+ E  ++E+    +I    MEK  +   ++ VPL
Sbjct: 809 AMFRVNMELKKRGLKSRLILQIHDELLVETAKDEVDIVKEI----MEKEMMGAADMAVPL 864

Query: 963 KVNIKVSNNWQE 974
           ++ I   +NW +
Sbjct: 865 EIGISEGDNWYD 876



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 178/312 (57%), Gaps = 13/312 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N + L+DG S + RAFY  P L+  ++GL  NA+ GF N+++K++   + +    H  V 
Sbjct: 2   NKILLIDGHSILNRAFYGLPDLT-NYEGLHTNAVLGFLNIIFKIMDEEKPD----HMCVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y  YK  R  +PE L  Q+PL++    A  +  +E  G+EADDII T 
Sbjct: 57  FDVHEPTFRHLKYSAYKGTRKPMPEELREQVPLMKEVLTAMHVTIVEKGGYEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEK 178
           + +AE++G+A  I+S D+DL+QL + T  +     K     IE+     V++ +G+ P +
Sbjct: 117 SRMAERDGYATVIVSGDRDLLQLATDTILVRIPKTKATGTTIENYYAKDVVEAYGVTPVQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++ L GD+ DNIPG+PGIG KTAA L+ EYG++ENIL +   +K  + ++N+ E  +
Sbjct: 177 FIDMKGLMGDTSDNIPGVPGIGEKTAAKLMIEYGSMENILDHLDTVKPPRVQKNLTENMD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +S+ L  ++ D  + + L+ + +E           K L F  L+ +  T    +AA 
Sbjct: 237 LAVMSKDLATIKLDCKLDVSLDEMTIESLFNEDSYKIFKRLGFNSLLKKFDTV--TEAAE 294

Query: 299 IEPVVLDINTTE 310
           I+PV+  + TTE
Sbjct: 295 IDPVITLLETTE 306


>gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
          Length = 908

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 303/523 (57%), Gaps = 12/523 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +K+FF N     I +N K     L   G+ ++  +  ++++Y L S ++   +  I  + 
Sbjct: 395 IKEFFRNSDSKFITYNFK----PLLNEGVEIKNMDVDLMIAYHLISSQTKEGV-EIPLEQ 449

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
           LS         +        +S  +  +   E S  I++ + +   ++  + LL V E+ 
Sbjct: 450 LSGIDIAPYSEKFGKEAPGNLSTEEYGKFLTERSKGIMETYGIAMEEIKGKDLLEVLEKT 509

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+I V+S ME  GI+ID     +   E+   L  L++ I++++GE+FNL+SPKQL ++
Sbjct: 510 EMPLIKVLSAMERKGIKIDPVYFAKYEKELEILLSDLQKKIFEIAGEEFNLNSPKQLAEV 569

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF KL      KTKTG   T  + LE++      I   ILE+R+ +K+K+TY D+LP  +
Sbjct: 570 LFFKLNLDPVKKTKTG-LSTDEEVLEKLKSDGVEIASYILEYRKYAKLKNTYVDALPKLV 628

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           + +  R+HT ++   T TGRL+S  PNLQNIP+KTD G KIR+ FI+     L+  DYSQ
Sbjct: 629 DSK-DRLHTTFNQIGTTTGRLSSSNPNLQNIPVKTDEGMKIRQGFIADSGNVLMGIDYSQ 687

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYG 811
           IELR+LA ++K   L   ++N+ D+HR+ A +IF +   E+VS + R  AKTINFSIIYG
Sbjct: 688 IELRVLAELSKDENLIAAYKNNEDLHRVTAKKIFELGEGEEVSREQRIIAKTINFSIIYG 747

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            + F L+ +L IP+ EA DYI RYF ++P + ++     ++  +NGY ET FGRR   + 
Sbjct: 748 KTAFGLSKELGIPQKEATDYINRYFEQYPRVKDFERSIIDYAEKNGYTETYFGRRRIIEG 807

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           I S   +I+N  ER A+N+ IQG+AA+I ++ MI + K + D K    +LLQ+HDEL+FE
Sbjct: 808 IISKNKNIKNQAERMAVNSVIQGTAAEILKKVMIEIFKVI-DGKEDISLLLQVHDELIFE 866

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + EE++     II + M  +   K N  V L +N  +  NW E
Sbjct: 867 IKEEKVEEYRTIIENIMRNSV--KFN-DVVLDINTNIGKNWAE 906



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 151/293 (51%), Gaps = 18/293 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  +++    + I + F V     
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFTNTLLSIIKEFSPDYIGAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           A   R+EIY +YKA R  +PE LL Q+P +      F I   +I+G+EADD++ T +   
Sbjct: 61  ASLKRSEIYSEYKAQRDAVPEDLLLQIPRIEELLDGFNINRFKIEGYEADDVMGTLSQKL 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------EHVIKKWGIPPEKMVC 181
            KEG  V +++ DKDL Q++     +    K E  D        E V++  G+  + +  
Sbjct: 121 SKEGIEVIVVTGDKDLAQILDKNVKIALLGKGEGGDKFKILETDEDVVEYLGVTSKMIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
              L GDS D IPG+  IG K AA +L++YG+LE +  N  ++ +     K    N++E 
Sbjct: 181 FFGLIGDSSDGIPGVRKIGPKKAAPMLEKYGDLEGVYENIDKLTEIPGIGKSLIANMIED 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            + A +SRKL  +  D+PI   ++ L     +  +L+   K LEF  L+ ++ 
Sbjct: 241 KDIAFMSRKLATIEKDIPIDCTIDDLKY-SVDNKKLLDLFKTLEFRVLVKKMG 292


>gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
 gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
          Length = 932

 Score =  320 bits (820), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 182/493 (36%), Positives = 271/493 (54%), Gaps = 25/493 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D ++ +Y+LDS RS    A +A+ +L            +++P     D    +     + 
Sbjct: 457 DTVVAAYLLDSVRSDFADAHLAETYL-----------HAALPAAAGEDGAPADAPSAAAR 505

Query: 548 VILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
                 +L  P    L  +    ++ +++ P++ V++ ME  G+ +D   L   S E+S 
Sbjct: 506 SAWLARILREPLAAALEAQGAEDIFTKIEMPLVRVLASMERAGMYVDPARLAAQSEELSG 565

Query: 605 NLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQIN 661
            +  L + I +L+G E+FNLSSP QL  +LF KL  P+    KT+ G + T A+ LE + 
Sbjct: 566 QIAELSDRIRELAGGEEFNLSSPMQLSRVLFDKLGLPTAGLKKTQRGYYSTNAKVLEDL- 624

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D  I++ ILE+R+ +KIKSTY D+L   + +   RVHT Y+   T TGRL+S  PNLQ
Sbjct: 625 AKDYEIVRLILEYRERTKIKSTYLDTL-GALRETDGRVHTTYNQTITATGRLSSSNPNLQ 683

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP +++LG  +++AF        ++ DYSQIELR+LAH++    L   F    D H   
Sbjct: 684 NIPTRSELGHAVKKAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFHAET 743

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AA +FGV +E+V+PQ+R  AK +NF I+YG   + L+  L IP +EA + I  YF  +PG
Sbjct: 744 AARVFGVPVEEVTPQLRSRAKAVNFGIVYGQQAYGLSQALDIPMAEAREMIDAYFRAYPG 803

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+++T  F +Q GY ET++GRR    E+  P    R   ER A+N P+QGSAADI +
Sbjct: 804 VRTYLDETVAFAKQTGYAETMYGRRRPIPELRVPAQ--RMFGERTAMNHPMQGSAADIIK 861

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AM+ V + L     A KM+LQ+HDEL FE P  E+     ++   ME        LRVP
Sbjct: 862 IAMVRVAERLRTEGFAAKMILQVHDELDFECPVGEVDALVAMVREEMEGVA----QLRVP 917

Query: 962 LKVNIKVSNNWQE 974
           L  +  V   W E
Sbjct: 918 LIADASVGETWAE 930



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S ++RAF+A P      DG P NA+ GF NM  K++     + +       FD  
Sbjct: 16  VIDGNSLMHRAFHAVPPTMNAPDGSPTNAVFGFLNMFLKMVDEFSPDGVV----CAFDKG 71

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R E+ P YKA RP +   L  Q P+++    +  +P +E++G+E DDI+ T     
Sbjct: 72  HPKVRMEMLPQYKAQRPPMDPNLRAQFPMIKELLASLSVPVVELEGWEGDDILGTLARRG 131

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKWGIPPEK 178
           E  G  + +++ D+D+ QLV+    +  T K          E   D+ H     GI PE 
Sbjct: 132 EAAGCDMYLVTGDRDMYQLVTDHVHVVSTRKGLSDIAIMTPESVDDLYH-----GITPEL 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +     L GDS DNIPG+PGIG K A+ L+ +YG+L+ ++ +A  +K  K  E++  + +
Sbjct: 187 VPDFYGLKGDSSDNIPGVPGIGPKKASALIVQYGSLDEVIAHADEVK-GKMGESLRAHID 245

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-VATTYDCDAA 297
            A +SRK+  + TD P+   L+ +     +   + + L AL    + NR +A   D  A+
Sbjct: 246 DALVSRKIATIMTDAPVECDLDEVSFPAYDAASVSAALGALGIMAMQNRFLALLGDAAAS 305

Query: 298 NIE------PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334
                    P VL ++   ++    E E +R++    + F  L
Sbjct: 306 QAAVSKLELPEVLRVSLDASRAFD-EAESNRESAEMNACFDEL 347


>gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 893

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 171/428 (39%), Positives = 260/428 (60%), Gaps = 11/428 (2%)

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           QL+  +   L    L  +Y  ++ P++ +++ ME TG+ +++  L +  A  +  +  +E
Sbjct: 471 QLYGPMSAALADANLTELYGTVELPLVPILAAMERTGVAVNRAALGRALAAANARIAEIE 530

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           ++IY L+G +FN+SSPKQLG++LF +L    P   KTKTG + T A+ LE++    +P++
Sbjct: 531 QDIYALAGTEFNISSPKQLGEVLFDRLGLTSPKMKKTKTG-YSTNAEVLEEMRAA-HPVV 588

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
             +L +R  SKI+STY + +   I   T RVHT ++   T TGRL+S +PNLQNIP++T+
Sbjct: 589 DRVLTYRMWSKIRSTYLEGIGALIRPDTGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTE 648

Query: 729 LGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
            G+ +R A   P      L+SADYSQIELRILAH++    L   F    DIH   A+E+F
Sbjct: 649 EGRAVR-ALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVF 707

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV + +V+   RR AK +NF I+YG+S + L+  L IPR EAA YI+RYF R+ G+  ++
Sbjct: 708 GVPLAEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGVRAFL 767

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           ++       NG+V T++GRR     INS     R+  ER A+N PIQG+AAD+ + AMI 
Sbjct: 768 DRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKIAMIR 827

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
              +L    + +++LLQ+HDELV EV  +EI   ++++  +M  A      L VPL V++
Sbjct: 828 ADAALRAAGVKSRILLQVHDELVLEVVNDEIAQVTELLTAAMSGAA----QLAVPLAVDV 883

Query: 967 KVSNNWQE 974
               NW E
Sbjct: 884 HTGKNWAE 891



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/250 (40%), Positives = 143/250 (57%), Gaps = 9/250 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DGSS  +RAFYA  L    H G+  NAI GF  ML KLL    KE   S   + FD  
Sbjct: 7   VIDGSSLFFRAFYALQLPPNTH-GVHTNAIHGFAMMLVKLL----KEHAPSQIVIAFDKS 61

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR  +YPDYK  R K PE L+ Q+PL++      GIP +E+  +EADDII T    A
Sbjct: 62  RTTFRTALYPDYKGTRDKTPEELIEQIPLLKELAACLGIPFVELDDYEADDIIGTLGTQA 121

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCLQA 184
              G A  +++ D+D +QL+ P   +  T K      + D     +++G  P +++ L+ 
Sbjct: 122 AAAGAAAIVVTGDRDALQLIRPGLDVLLTKKGISDTRRYDTAAFEEEYGFAPLRLIDLKG 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNI G+PGIG KTA  LL  YG +E++L +A  +  KK   +++EY + A LS+
Sbjct: 182 LMGDSSDNILGVPGIGPKTATKLLLSYGTIESVLDHAGEVAGKKLSASLIEYRDQALLSK 241

Query: 245 KLVMLRTDVP 254
           +L  ++ DVP
Sbjct: 242 ELATIKCDVP 251


>gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
 gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 880

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/510 (36%), Positives = 298/510 (58%), Gaps = 23/510 (4%)

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H  K    +L   GI +RG   D  L +Y+L  G+ ++ +  ++Q+ L        KS  
Sbjct: 385 HEAKAAWHMLAGRGIELRGIAHDTALAAYLLRPGQRTYALTDVSQRHLQ-------KSLG 437

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           ++     I D   +   ++ +  I++L   L  +L       +Y  L+ P++ +++QME 
Sbjct: 438 AATEQLSILD---ENPLVDQAGAIMELAAELTAQLQEIDSFELYTDLELPLVSILAQMEA 494

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK 644
            GI +D+D+L+       + +   E    +L+G+   NL+SPKQL  +LF     P   K
Sbjct: 495 AGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPKQLQAVLFDTFDMPKTKK 554

Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           TKTG + T A+++EQ+     +P + ++L  R+  K+K+T  + L   I     R+HT +
Sbjct: 555 TKTG-YSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTL-EGLIKTIQP-DGRIHTTF 611

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762
           +   T TGRL+S EPNLQNIP++T+ G++IR AF+     + LI+ADYSQIE+R++AH++
Sbjct: 612 NQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLS 671

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L + +    D+H  V +++F V +++V+P++RR  K +++ ++YG+S F L+ QL 
Sbjct: 672 ADPGLIEAYREGEDLHNYVGSKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLG 731

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP  EA + ++ YF RF G+  Y+++     R++GY  T+FGRR +  E+NS     R  
Sbjct: 732 IPAREAKEIMESYFERFGGVKRYLDEVVVQARKDGYTSTVFGRRRYLPELNSDNRVAREN 791

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ERAA+NAPIQG+AADI + AMI V K+LE   LA+++LLQ+HDELV EV   E     +
Sbjct: 792 AERAALNAPIQGTAADIIKVAMIRVDKALE--ALASRVLLQVHDELVVEVAPGEAEDVQR 849

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           I+   M+KA    I L VPL+V++ V  NW
Sbjct: 850 ILEREMDKA----IELTVPLEVSVGVGKNW 875



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 12/288 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  +     G   NA+ GF +ML  +L   + + +A    V F
Sbjct: 8   LLLIDGHSMAFRAFYALPAENFSTSGGQHTNAVYGFLSMLANILAEEKPDFVA----VAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR +++P+YKA R   PE    Q+ L+R   +  GI  +  + FEADDI+AT +
Sbjct: 64  DVGRKTFRTDMFPEYKAQREAAPEEFRGQVELIRDVLETLGITTLSRENFEADDIVATLS 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  + +   +++ D+D +QLV   TT LY      K  +   E V +K+G+ PE+   
Sbjct: 124 TQAGAD-YQTFLVTGDRDYLQLVDDSTTVLYPMRGVSKLHRFTPEAVKEKYGLSPEQYPD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P +P +G KTA   + +YG+L+ ++ +A  IK     +N  +  E  +
Sbjct: 183 FAALRGDPSDNLPSVPKVGEKTATKWITQYGSLDALIEHAEEIKGVA-GQNFRDRIEQVK 241

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288
           L+R+L  + TD+ + +    L  +      + +    LEF T L  RV
Sbjct: 242 LNRQLTQMVTDMDLEVGPADLEFKGAVASEVAARFDELEFGTNLRERV 289


>gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 835

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/510 (36%), Positives = 298/510 (58%), Gaps = 23/510 (4%)

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H  K    +L   GI +RG   D  L +Y+L  G+ ++ +  ++Q+ L        KS  
Sbjct: 340 HEAKAAWHMLAGRGIELRGIAHDTALAAYLLRPGQRTYALTDVSQRHLQ-------KSLG 392

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           ++     I D   +   ++ +  I++L   L  +L       +Y  L+ P++ +++QME 
Sbjct: 393 AATEQLSILD---ENPLVDQAGAIMELAAELTAQLQEIDSFELYTDLELPLVSILAQMEA 449

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK 644
            GI +D+D+L+       + +   E    +L+G+   NL+SPKQL  +LF     P   K
Sbjct: 450 AGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPKQLQAVLFDTFDMPKTKK 509

Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           TKTG + T A+++EQ+     +P + ++L  R+  K+K+T  + L   I     R+HT +
Sbjct: 510 TKTG-YSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTL-EGLIKTIQP-DGRIHTTF 566

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762
           +   T TGRL+S EPNLQNIP++T+ G++IR AF+     + LI+ADYSQIE+R++AH++
Sbjct: 567 NQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLS 626

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L + +    D+H  V +++F V +++V+P++RR  K +++ ++YG+S F L+ QL 
Sbjct: 627 ADPGLIEAYREGEDLHNYVGSKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLG 686

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP  EA + ++ YF RF G+  Y+++     R++GY  T+FGRR +  E+NS     R  
Sbjct: 687 IPAREAKEIMESYFERFGGVKRYLDEVVVQARKDGYTSTVFGRRRYLPELNSDNRVAREN 746

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ERAA+NAPIQG+AADI + AMI V K+LE   LA+++LLQ+HDELV EV   E     +
Sbjct: 747 AERAALNAPIQGTAADIIKVAMIRVDKALE--ALASRVLLQVHDELVVEVAPGEAEDVQR 804

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           I+   M+KA    I L VPL+V++ V  NW
Sbjct: 805 ILEREMDKA----IELTVPLEVSVGVGKNW 830



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 126/246 (51%), Gaps = 7/246 (2%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L N   E      AV FD    TFR +++P+YKA R   PE    Q+ L+R   +  GI
Sbjct: 1   MLANILAEEKPDFVAVAFDVGRKTFRTDMFPEYKAQREAAPEEFRGQVELIRDVLETLGI 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKI 163
             +  + FEADDI+AT +  A  + +   +++ D+D +QLV   TT LY      K  + 
Sbjct: 61  TTLSRENFEADDIVATLSTQAGAD-YQTFLVTGDRDYLQLVDDSTTVLYPMRGVSKLHRF 119

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
             E V +K+G+ PE+     AL GD  DN+P +P +G KTA   + +YG+L+ ++ +A  
Sbjct: 120 TPEAVKEKYGLSPEQYPDFAALRGDPSDNLPSVPKVGEKTATKWITQYGSLDALIEHAEE 179

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-T 282
           IK     +N  +  E  +L+R+L  + TD+ + +    L  +      + +    LEF T
Sbjct: 180 IKGVA-GQNFRDRIEQVKLNRQLTQMVTDMDLEVGPADLEFKGAVASEVAARFDELEFGT 238

Query: 283 KLINRV 288
            L  RV
Sbjct: 239 NLRERV 244


>gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
          Length = 861

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/504 (35%), Positives = 292/504 (57%), Gaps = 20/504 (3%)

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPI 530
            LH+ GI     + D+M+ ++++D   S +D   +A+K+    S  + ++   +     +
Sbjct: 372 ALHKNGIEFADVKFDVMIAAFLVDGTLSDYD--KLAEKYQFDRSLLKDDVFGKKGKGKLV 429

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D     +   +A+  ++ +  L   L   L   ++  +++ ++ P+  V+  ME  G+  
Sbjct: 430 DL---DEAARYAMLQADHLQDLVSELDASLKEMEMKELFDTIEMPLTHVLYAMEKEGVVT 486

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
               L +++   S  + +L   IY+++G +FN++SPKQL  IL+ +L   +G K      
Sbjct: 487 SLSTLDEIARATSDKIDTLSAQIYEMAGMEFNINSPKQLAQILYDELGLKAGKK------ 540

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           ++TA D+ +     +PII  +LE R+  KI STYA  L  H+ K   ++HT ++   T T
Sbjct: 541 RSTAADVLEKLAKQHPIIPLLLEHRKYQKIYSTYAVGLSKHVLK-DGKIHTIFNQIQTQT 599

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S EPNLQNI ++ + G++IR+AF++     L+SADYSQIELR+LAH+A    +   
Sbjct: 600 GRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMADEEVMIDA 659

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F + +DIH   A +IF V+ + V   MRR AKT+NF I+YG S F L+ QL I R EA  
Sbjct: 660 FNHGIDIHTKTAMQIFDVDHDSVDANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHA 719

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I +YF  +P I  +++ T  F  +NGYV+T+F RR +  EI+     +R   +RAA+NA
Sbjct: 720 FIDKYFASYPNIKSFMDSTIQFCEENGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNA 779

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAAD+ + AMI + + +   ++ ++M+LQIHDEL+F+V E+E+     I+   M++
Sbjct: 780 PIQGSAADLIKLAMIHIFERMRREQVKSRMILQIHDELIFDVWEDELEQMKSIVEEGMQQ 839

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + LRVPL     +  +W E
Sbjct: 840 A----MKLRVPLIAEANIGKSWYE 859



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 179/346 (51%), Gaps = 20/346 (5%)

Query: 7   LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L L+DG+S ++RA+YAT    + +  +G+P NA+ GF  M+ K L     +++     V 
Sbjct: 4   LLLIDGNSMLFRAYYATVYGRMMKTSNGIPTNAVYGFITMINKALSMVEPDAVL----VA 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    TFR+E Y +YK  R ++ + L+ Q P+ R    A+G+   E +G EADDII + 
Sbjct: 60  WDAGKPTFRHETYTEYKGTRKELDQELIVQFPIAREFLDAYGMKRYECEGIEADDIIGS- 118

Query: 125 TYIAEK-EGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEKM 179
             +A+K     + I+S+D+DL+QL+ PTT +Y       + E +D   + +  GI P ++
Sbjct: 119 --MAKKYPDVEIHILSSDRDLLQLIDPTTDVYLMKKGITEMEVMDEAKLKEAMGIVPSQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD+ DNIPG+ GIG KTA  LL EY  ++N+  +   IK  K +E +    E 
Sbjct: 177 IDLKALMGDTADNIPGVKGIGEKTALKLLSEYETVDNVYAHIDEIK-GKLKEKLETDKEK 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS+ L  ++ D  I +P E ++L++     L  F    E    +     T +      
Sbjct: 236 AFLSKYLATIKVDAEIPLPFEAMLLQEPK-EELHDFFVKYEMKSFVKDTMDTREVKKEGS 294

Query: 300 EPVVLDINTT-ENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKI 341
             VV  I++     G  +   +D ++      +    SL DQT  I
Sbjct: 295 RSVVKQISSQLLQDGALVYANVDNESYYDAVLYGFAVSLKDQTEYI 340


>gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2]
          Length = 888

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/491 (35%), Positives = 287/491 (58%), Gaps = 15/491 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +Y+L   + S+++  IA +       +  +S    + +D  SD   Q H    + 
Sbjct: 406 DTALAAYLLVPDQRSYELQQIALERAGIELSDA-ESDSGQLALDLESDQTAQTHG-HRAA 463

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L++  +L  K+    +  VY  ++ P++ V+++ME+ GI +D+  L  +  E +K   
Sbjct: 464 ALLEVHDILAAKIDEANMSQVYRDIELPLVPVLARMELAGIAVDEAGLSGLIDEFTKQAN 523

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNP 666
           +  E  Y+  G + NL SPKQL  +LF +L  P   +TKTG + T A+ L ++    ++P
Sbjct: 524 ASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKTKRTKTG-YTTDAEALAELFIKTEHP 582

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            ++++L +R  +K+K T    L         R+HT Y      TGRL+SL+PNLQNIP++
Sbjct: 583 FLQHLLAYRDSTKLKQTVVGLLKT--VAEDGRIHTTYQQTVAATGRLSSLDPNLQNIPVR 640

Query: 727 TDLGQKIRRAFISPP---TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           T+ G++IR  FI+ P     +L++ADYSQIE+RI+AH++    L Q F++  D+H  V +
Sbjct: 641 TESGRRIREIFIADPHVDDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGS 700

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           ++FGV I++V   MR   K +++ ++YG+S + L+ QL I   EA + +++YF RF  + 
Sbjct: 701 KVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVK 760

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +Y+++     R NGY ETI GRR +   ++S +  +R++ ERAA+NAPIQGSAADI + A
Sbjct: 761 DYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIA 820

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ V   L DHK  + +LLQ+HDE++ +V  EEI + +QI+   M  A      L VPL 
Sbjct: 821 MLKVSDRLGDHK--STVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSA----FELDVPLD 874

Query: 964 VNIKVSNNWQE 974
           VN+    +W +
Sbjct: 875 VNVGTGTSWHD 885



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 155/303 (51%), Gaps = 16/303 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q    L L+DG S  YRAF+A P+ +     G   NAI GF +ML  +L   R ES  SH
Sbjct: 3   QVNESLLLIDGHSLAYRAFHALPVENFSTSTGQSTNAIYGFISMLINVL---RDES-PSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR E YP+YKA R K P    PQ+ L++    A GI  +  +GFEADD 
Sbjct: 59  VAVAFDLGRQTFRLEEYPEYKAGRAKTPPEFHPQIDLIKDIVVAMGITVVTKEGFEADDA 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPP 176
           +AT   +  + G  V ++S DKD  QL + + T LY         ++    + +K+ + P
Sbjct: 119 LATMARMGTEAGAQVEVMSGDKDSFQLSNDSVTILYPKRGVSDLNRMTPAAIEEKYAVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENI 233
                L AL G+  DN+PG+PG+G KTAA  L  YG+L  +L NA  IK K   K R++I
Sbjct: 179 VNYRGLAALVGEKADNLPGVPGVGDKTAAKWLAAYGDLPGVLENADAIKGKVGEKLRDHI 238

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E     RL+R    L  DV + +    L   + +   L S    LEF  L  R++  + 
Sbjct: 239 SEVERNFRLNR----LLDDVDLGLTYADLKWGEGDPSELSSLFDQLEFQALGKRLSAIFG 294

Query: 294 CDA 296
            +A
Sbjct: 295 EEA 297


>gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 321

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 155/311 (49%), Positives = 217/311 (69%), Gaps = 4/311 (1%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  A  +TGRL+S +PNLQNI
Sbjct: 13  DFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNI 72

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+   L   F N LD+HR  AA
Sbjct: 73  PIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAA 132

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R ++  Y+ RYF R+PG+ 
Sbjct: 133 EVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVL 192

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER AINAP+QG+AADI ++A
Sbjct: 193 DYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKA 252

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I   M  A      L VPL 
Sbjct: 253 MVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIRPHMSGAA----ELAVPLL 308

Query: 964 VNIKVSNNWQE 974
           V + V NNW E
Sbjct: 309 VEVGVGNNWDE 319


>gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
 gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
          Length = 1046

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 197/542 (36%), Positives = 315/542 (58%), Gaps = 26/542 (4%)

Query: 447  KEILSY-LKKFF---ENEHFLKIGHNI--KYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
            KEI++Y +K++    E+E+F   G+++  K   +   R+GI    + DI+L  YVL +  
Sbjct: 511  KEIIAYNVKEYMKSGESEYF---GYSVGGKTYGINEERFGIKCTEYFDILLARYVLGT-E 566

Query: 501  SSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
            S  +I  I          T +E  K  +       +SD  V E   + +  I +L ++ R
Sbjct: 567  SLQEIEEIILDEFGVEIATFEEQFKKERRKKDFSDVSDDVVCEFLSKRTFFIYKLEIIFR 626

Query: 558  PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
             +L  E+ L+++++L+  +I V++QME TGI+ID+    +   E+ + +  L+ +IY L+
Sbjct: 627  NRLQNEQFLNIFDKLESRLIPVLAQMEETGIKIDKKYFSEFQNELEEKINMLQSDIYKLA 686

Query: 618  GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG-----DNPII-KNI 671
              +FN+ SP+QLG++LF KL+ PSG KTKTG + T  + LE I        D  +I K +
Sbjct: 687  DGEFNIDSPQQLGEVLFEKLQIPSGKKTKTG-YSTNVEVLEMIANNRELTEDKRMIGKKL 745

Query: 672  LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
            LE+R   K+ STY + +P   +K  +R+HT ++   T TGRL+S  PNLQNIP++TD G 
Sbjct: 746  LEYRAYKKLLSTYIEPIPKLADKE-ERIHTTFNQNGTSTGRLSSANPNLQNIPVRTDDGI 804

Query: 732  KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI-FGVNI 790
            +IR  F+S     LIS DYSQIELR+LA ++K   L Q ++++ D+H + A +I F    
Sbjct: 805  RIRTGFVSKEGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLTARKIFFKTEE 864

Query: 791  EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            +++S   R  AK INFSI+YG +PF L+ +L I   EA+ YI  YF  +P + ++++   
Sbjct: 865  DEISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITTYFEEYPRVRKFLDIVT 924

Query: 851  NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
               + +G+VET +G R +   IN+   +++    R A+N  +QG+AA+I ++ MI +H+ 
Sbjct: 925  ETAKLHGFVETFYGTRRYISGINATNKNVQAQAVRMAVNTVVQGTAANIIKKVMIELHEE 984

Query: 911  LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
             ++ +   KMLLQ+HDEL+FEV +E      + I   ME     K   +VPLK N  V+ 
Sbjct: 985  FKNDE-NIKMLLQVHDELIFEVRDEFAKEYMEKIEKIMENTVKFK---KVPLKANGSVAK 1040

Query: 971  NW 972
            NW
Sbjct: 1041 NW 1042



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 136/287 (47%), Gaps = 17/287 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D S+ +YR+ +A  +  R   G+   A  GF N L  +++  R + + +   V  D  
Sbjct: 6   ILDTSAIMYRSHFAL-MGMRNSSGMSTGATFGFINTLESVIREFRPDYLVACLDVKRDEL 64

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             T   E Y   KA+R  +PE L+ Q+  +      + IP  +  G EADD+IAT+    
Sbjct: 65  ERTGELETY---KAHRESMPEELVMQIDTIMKVLDGYRIPKYKKAGQEADDVIATFATKF 121

Query: 129 EK---EGFAVTIISTDKDLMQLVSPTTCLY--------DTVKEEKIDIEHVIKKWGIPPE 177
                E   V +I+ DKDL QLV     +            K  K D E V++  G+ P+
Sbjct: 122 SNDADEQIEVFVITGDKDLTQLVDGKINIALLGKGDKNSAFKHIKTD-EDVVEYLGVTPD 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K+  L  L GD  D IPG+ GIG K    L+  YGNLE I  N   IK  K++E +L   
Sbjct: 181 KIPDLFGLMGDKSDGIPGVAGIGPKNGVKLITTYGNLEGIYENIDEIKG-KQKEKLLTDK 239

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           E A +SR+L  ++ ++ +      L  E+ +   L+   + L F + 
Sbjct: 240 ENAFISRELATVKRELDVEYDKNKLKFEEKDFDSLLKLYEELNFKRF 286


>gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 887

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 191/518 (36%), Positives = 304/518 (58%), Gaps = 26/518 (5%)

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
           HF K      Y KL+    G ++ G   D  +  Y+L  G+ +++IA + Q+ L   +K+
Sbjct: 389 HFAKR----TYHKLI--SRGFTLGGIAHDTAIAGYLLRPGQRTYEIADVYQRHL---QKQ 439

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           + +S      +  + DS  +   IE +  +L+L   L  +L   + L +Y  L+ P+I +
Sbjct: 440 LPQSDGQ---LSLLDDSPSEPLLIE-AMAVLELVPRLTDELSDIESLELYTDLEIPLITI 495

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLK 638
           ++ ME TGI +D   L++        +   EE   DL+G+   NLSSPKQL  +LF    
Sbjct: 496 LAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFD 555

Query: 639 FPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            P   KTKTG + T A+++E +    D+P ++++L  R+ SK+KST  + L   +     
Sbjct: 556 LPKTKKTKTG-YSTAAKEIEALAKKTDHPFLQHLLAHREYSKMKSTL-EGLIRSVGG-DG 612

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756
           R+HT +      TGRL+S +PNLQNIP++TD G+KIR AF+     + L++ADYSQIE+R
Sbjct: 613 RIHTTFKQTVASTGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETLLTADYSQIEMR 672

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ++AH+++   L Q +++  D+H  V +++F V I++V+P++RR  K +++ + YG+S + 
Sbjct: 673 VMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSYG 732

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL IP+ EA   +  YF RF G+  Y+    +  R++GY  T+FGRR +  E+ S  
Sbjct: 733 LAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKDGYTSTLFGRRRYLPELTSTN 792

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
              R   ERAA+NAPIQG+AADI + AM+ V++ L+   L +++LLQ+HDELV EV   E
Sbjct: 793 RIARENAERAALNAPIQGTAADIIKVAMVRVNRRLD--SLKSRVLLQVHDELVLEVAPGE 850

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   S+I+   M+ A    I+LRVPL+V+     NW E
Sbjct: 851 LEEVSRIVSEEMDGA----ISLRVPLEVSTGHGTNWDE 884



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 11/263 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           E  L L+DG S  +RAFYA P  +     G   NA+ GF +M   +L +       +H A
Sbjct: 9   EKTLLLIDGHSMAFRAFYALPAENFSTTGGQHTNAVYGFLSMFVNILTSEEP----THLA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE++P+YKA R   PE    Q+ +++    A G+  +E  G+EADD+IA
Sbjct: 65  VAFDVARETFRNELFPEYKAQRAPTPEEFKGQVEILKDILHAMGVTTVEKPGYEADDVIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEE---KIDIEHVIKKWGIPPEK 178
           T    A K+G    I++ D+D  QLV+   T LY T       ++    V KK+ + P +
Sbjct: 125 TLATAATKQGMKTLIVTGDRDSFQLVNDDVTVLYPTRGVSTLNRMTPAAVEKKYDLTPTQ 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+P IPG+G KTA   +++Y  L N+L +   IK  K  + + E  +
Sbjct: 185 YPDFAALRGDPSDNLPKIPGVGEKTATKWIKKYETLGNLLAHVDEIK-GKVGDALRERVD 243

Query: 239 TARLSRKLVMLRTDVPITI-PLE 260
              ++RKL  +  D+P+ + PL+
Sbjct: 244 QVAMNRKLTEMVKDLPLEVSPLQ 266


>gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 865

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 173/485 (35%), Positives = 289/485 (59%), Gaps = 13/485 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DIML ++++D   S ++  +    +     KE +  +K    +  I  +Q  ++A+  + 
Sbjct: 390 DIMLAAFLVDQTISDYEKLAEKYHFDQSIHKEDIYGKKGKPKL--IDFAQQSKYAMLQAE 447

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +  +  LL   L   ++  +++ ++ P+  V+  ME  G+  D+ +L++++ E    + 
Sbjct: 448 NLYSIVALLDETLQEMEMKDLFDTIEMPLTRVLYAMEKEGVYCDKAVLQKIADETEAKIN 507

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           +L   IY+++G +FN++SPKQL  +L+ +L   +G K      ++TA D+ +     +PI
Sbjct: 508 ALSLQIYEIAGMEFNINSPKQLASVLYDELGLKAGKK------RSTAADVLEKLVHVHPI 561

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           I  +LE R+  KI STYA  L  HI     ++HT ++   T TGRL+S EPNLQNI ++ 
Sbjct: 562 IPLLLEHRKYQKIYSTYAIGLAKHI-LADGKIHTLFNQIQTQTGRLSSSEPNLQNISVRN 620

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           + G+ IR+AF++     L+SADYSQIELR+LAH+A    +   F + +DIH   A +IF 
Sbjct: 621 EEGKGIRKAFVASEGHVLLSADYSQIELRMLAHMADEEQMIDAFNHDIDIHTKTAMQIFD 680

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V  ++V   MRR AKT+NF I+YG S F L+ QL I R EA  +I++YF  +P I  +++
Sbjct: 681 VAHDEVDANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHTFIEKYFASYPKIKTFMD 740

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
            T  +  ++GYV+T++ RR +  EI      +R   +RAA+NAPIQGSAAD+ + AMI +
Sbjct: 741 ATIAYCEEHGYVKTLYNRRRYIKEIADKNYMMREFGKRAAMNAPIQGSAADLIKMAMIHI 800

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           ++ +++ K+ ++M+LQIHDEL+F+V E+EI   +QI+   M+      + L+VPL     
Sbjct: 801 YQKMQEEKVKSRMILQIHDELIFDVCEDEIDKMTQIVEEGMQNV----MKLKVPLIAQAN 856

Query: 968 VSNNW 972
           +  +W
Sbjct: 857 IGKSW 861



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 150/265 (56%), Gaps = 13/265 (4%)

Query: 7   LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L L+DG+S ++RA+YAT    + +  +G+P NA+ GF  M+ K       + +     V 
Sbjct: 8   LLLIDGNSMLFRAYYATVYGRMMKTSNGIPTNAVYGFITMINKAFDMIHPDMVL----VA 63

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    TFR+E Y +YK  R ++ + L+ Q P+ R    A+G+   E  G EADDII   
Sbjct: 64  WDSGKPTFRHETYTEYKGTRKELDQELIVQFPIAREYLDAYGLQRYECDGIEADDIIGCM 123

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
               +     + I+S+D+DL+QL+ PTT +Y   K     E ++ E +++  GI P +++
Sbjct: 124 A--RQHPELEIHILSSDRDLLQLIDPTTDVYLMKKGISEIEVMNEEKLMETMGIKPSQII 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GDS DNIPG+ GIG KTA  LL+EY  ++N+  +   IK  K +E +    E A
Sbjct: 182 DLKALMGDSADNIPGVKGIGEKTALKLLKEYDTVDNVYAHIEEIK-GKLKEKLETDREKA 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILE 265
            LS+ L  ++TD  + I +  L+L+
Sbjct: 241 FLSKYLATIKTDETLPIDITALMLQ 265


>gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 887

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 191/518 (36%), Positives = 304/518 (58%), Gaps = 26/518 (5%)

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
           HF K      Y KL+    G ++ G   D  +  Y+L  G+ +++IA + Q+ L   +K+
Sbjct: 389 HFAKR----TYHKLI--SRGFTLGGIAHDTAIAGYLLRPGQRTYEIADVYQRHL---QKQ 439

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           + +S      +  + DS  +   IE +  +L+L   L  +L   + L +Y  L+ P+I +
Sbjct: 440 LPQSDGQ---LSLLDDSPSEPLLIE-AMAVLELVPRLTDELSDIESLELYTDLEIPLITI 495

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLK 638
           ++ ME TGI +D   L++        +   EE   DL+G+   NLSSPKQL  +LF    
Sbjct: 496 LAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFD 555

Query: 639 FPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            P   KTKTG + T A+++E +    D+P ++++L  R+ SK+KST  + L   +     
Sbjct: 556 LPKTKKTKTG-YSTAAKEIEALAKKTDHPFLQHLLAHREYSKMKSTL-EGLIRSVGG-DG 612

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756
           R+HT +      TGRL+S +PNLQNIP++TD G+KIR AF+     + L++ADYSQIE+R
Sbjct: 613 RIHTTFKQTVASTGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETLLTADYSQIEMR 672

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ++AH+++   L Q +++  D+H  V +++F V I++V+P++RR  K +++ + YG+S + 
Sbjct: 673 VMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSYG 732

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL IP+ EA   +  YF RF G+  Y+    +  R++GY  T+FGRR +  E+ S  
Sbjct: 733 LAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKDGYTSTLFGRRRYLPELTSTN 792

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
              R   ERAA+NAPIQG+AADI + AM+ V++ L+   L +++LLQ+HDELV EV   E
Sbjct: 793 RIARENAERAALNAPIQGTAADIIKVAMVRVNRRLD--SLKSRVLLQVHDELVLEVAPGE 850

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   S+I+   M+ A    I+LRVPL+V+     NW E
Sbjct: 851 LEEVSRIVSEEMDGA----ISLRVPLEVSTGHGTNWDE 884



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 141/263 (53%), Gaps = 11/263 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           E  L L+DG S  +RAFYA P  +     G   NA+ GF +M   +L +       +H A
Sbjct: 9   EKTLLLIDGHSMAFRAFYALPAENFSTTGGQHTNAVYGFLSMFVNILTSEEP----THLA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE++P+YKA R   PE    Q+ +++    A G+  +E  G+EADD+IA
Sbjct: 65  VAFDVARETFRNELFPEYKAQRAPTPEEFKGQVEILKDILHAMGVTTVEKPGYEADDVIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEE---KIDIEHVIKKWGIPPEK 178
           T    A K+G    I++ D+D  QLV+   T LY T       ++    V KK+ + P +
Sbjct: 125 TLATAATKQGMKTLIVTGDRDSFQLVNDDVTVLYPTRGVSTLNRMTPAAVEKKYDLTPTQ 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+P IPG+G KTA   +++Y  L+N+L +   IK  K  + + E  +
Sbjct: 185 YPDFAALRGDPSDNLPKIPGVGEKTATKWIKKYETLDNLLAHVDEIK-GKVGDALRERVD 243

Query: 239 TARLSRKLVMLRTDVPITI-PLE 260
              ++RKL  +  D+P+ + PL+
Sbjct: 244 QVAMNRKLTEMVKDLPLEVSPLQ 266


>gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 861

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 173/488 (35%), Positives = 284/488 (58%), Gaps = 19/488 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D+M+ ++++D   S +D   +A+K+    S  + ++   +     +D     +   +A+ 
Sbjct: 386 DVMIAAFLVDGTLSDYD--KLAEKYQFDRSLLKDDVFGKKGKGKLVDS---DEAARYAMA 440

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            ++ +  L   L   L   ++  ++  ++ P+  V+  ME  G+      L +++   S 
Sbjct: 441 QADYLQDLVAKLDTALREMEMKELFTTIEMPLTHVLYAMEKEGVVTSLSTLDEIAKATSD 500

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            + +L   IY+++G +FN++SPKQL  IL+ +L   +G K      ++TA D+ +     
Sbjct: 501 KIDALSAKIYEIAGMEFNINSPKQLAGILYDELGLKAGKK------RSTAADVLEKLASQ 554

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +P+I  +LE R+  KI STYA  L  H+ K   ++HT ++   T TGRL+S EPNLQNI 
Sbjct: 555 HPMIPLLLEHRKYQKIYSTYAVGLSKHVLK-DGKIHTIFNQIQTQTGRLSSSEPNLQNIS 613

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           ++ + G++IR+AF++     L+SADYSQIELR+LAH+A    +   F + +DIH   A +
Sbjct: 614 VRDEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKTAMQ 673

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           IF V  + V   MRR AKT+NF I+YG S F L+ QL I R EA  +I +YF  +P I  
Sbjct: 674 IFDVEHDAVDANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDKYFASYPNIKN 733

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +++ T  F  ++GYV+T+F RR +  EI+     +R   +RAA+NAPIQGSAAD+ + AM
Sbjct: 734 FMDTTIAFCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAM 793

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I ++K +++ ++ ++M+LQIHDEL+F+V EEE+     I+   M+ A    + LRVPL  
Sbjct: 794 IHIYKKMQEEQVKSRMILQIHDELIFDVWEEELEQMKTIVEEGMQHA----MKLRVPLIA 849

Query: 965 NIKVSNNW 972
              +   W
Sbjct: 850 EANIGRTW 857



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 186/363 (51%), Gaps = 21/363 (5%)

Query: 7   LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L L+DG+S ++RA+YAT    + +  +G+P NA+ GF  M+ K L     +++     V 
Sbjct: 4   LLLIDGNSMLFRAYYATVYGRMMKTSNGVPTNAVYGFITMINKALSMVEPDAVL----VA 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    TFR+E Y +YK  R ++ + L+ Q P+ R    A+G+   E +G EADDII + 
Sbjct: 60  WDAGKPTFRHETYTEYKGTRKELDQELIVQFPIAREFLDAYGMKRYECEGIEADDIIGS- 118

Query: 125 TYIAEK-EGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEKM 179
             +A+K     + I+S+D+DL+QL+ PTT +Y       + E +D   + +  GI P ++
Sbjct: 119 --MAKKYPDVEIHILSSDRDLLQLIDPTTDVYLMKKGITEMEVMDEAKLKESMGIVPSQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD+ DNIPG+ GIG KTA  LL EY  ++N+  +   IK  K +E +    E 
Sbjct: 177 IDLKALMGDTADNIPGVKGIGEKTALKLLSEYETVDNVYAHIDEIK-GKLKEKLETDKEK 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS+ L  ++ D  I +P   ++L++  G  L  F    E    +     T +      
Sbjct: 236 AFLSKYLATIKVDAEIPLPFADMMLKEP-GEELHDFFVKYEMKSFVKETMDTREVKKEGS 294

Query: 300 EPVVLDIN-TTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKIN-SEQTPQKLFLER 354
             +V  I+      G  +   +D ++      +    SL D+T  I  S+      FLE 
Sbjct: 295 RTIVKQISPDLLQDGALVYANVDNESYYDAQLYGFAISLQDRTEYIELSDALQDTAFLEW 354

Query: 355 LQK 357
           L++
Sbjct: 355 LKE 357


>gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
 gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
          Length = 843

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 171/420 (40%), Positives = 259/420 (61%), Gaps = 14/420 (3%)

Query: 558 PKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
           P+L  E     L  +Y  ++ P+ DV+++ME  G+ +D   L++V  EI + +  LEE I
Sbjct: 424 PRLDAELREMGLSRLYYEVELPLADVLAEMERVGMPVDARTLEEVGREIERRIAELEEAI 483

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
           ++  G  FN+ SPKQL ++LF +L  P   +TKTG + T A+ L+Q+   ++PI + I+ 
Sbjct: 484 FEDVGHPFNIGSPKQLSEVLFEELGLPPVRRTKTG-YSTDAKVLQQLAL-EHPIAERIIA 541

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           WR+L+K+K TY + L   + +   R+HT  +  +T TGR++S  PNLQNIP++T+ G +I
Sbjct: 542 WRELAKLKGTYVEGLLKLVGE-DGRIHTTLNQTTTATGRISSDSPNLQNIPVRTETGMRI 600

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R AF + P + L+ ADYSQIELRILAH+++   L + F+N  DIH   AAE+F V  E V
Sbjct: 601 RDAFTASPGRLLVVADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFDVRPESV 660

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           +P++RR AK +NF I+YGIS + LAT+L  +  +EA  YI+RYF R P + E+I K+   
Sbjct: 661 TPELRRRAKMVNFGILYGISGYGLATRLGNVHPAEADRYIQRYFERHPRVTEFIRKSLAE 720

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
             + GY  T+FGRR +  E+ +   ++R + ER A NA +QGSAADI + AM+ +   L 
Sbjct: 721 AEELGYATTLFGRRRYVPELRNKNKNVRKLGERIAFNARVQGSAADIIKVAMVDLAPRL- 779

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              L   ML+Q+HDELVF+V  + +   + +    M  A     +L  PL+V +K    W
Sbjct: 780 -GPLGADMLMQVHDELVFDVDRDRVEEVAALAAERMVAAY----DLDPPLEVEVKAGERW 834



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 158/300 (52%), Gaps = 9/300 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            ++L+DG S +YRAFYA P       GLP NA+ GF +M+ KLL +  +  I     V++
Sbjct: 13  RVYLIDGYSLLYRAFYALPQSIATSSGLPTNALYGFTSMVLKLLDSDEELGIG----VVW 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR E+YP+YKA R  +PE L  QL  +    +A  IP + ++GFEADD++AT +
Sbjct: 69  DGGLPAFRTEVYPEYKAQRSAMPEELRVQLDHLDEILEAMNIPVVRVEGFEADDVLATVS 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVC 181
                EG  + I++ D+D MQLV     +  T   V E K+     V++++G+ PE++  
Sbjct: 129 RRL-PEGVELYIVTGDQDAMQLVDGRVRVLRTTRGVSETKVYGRREVMEEYGVSPEQIPD 187

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DNIPG+ GIG K+AA LL+ +G+LE +      ++ +  R  + E  E A 
Sbjct: 188 YKALVGDPSDNIPGVRGIGPKSAAALLRRFGSLEALYERLEEVEARGTRRKLEEGRENAF 247

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS +L  +R D P+    E L             L+  EF  L  R+A          +P
Sbjct: 248 LSLRLARMRFDAPVQFDPERLRFRGVAPGVRDVLLRRYEFRSLEPRIAGLPVSGGGRPQP 307


>gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511]
 gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511]
          Length = 904

 Score =  317 bits (813), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 188/518 (36%), Positives = 295/518 (56%), Gaps = 21/518 (4%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFE---DIMLMSYVLDSG-RSSHDIASIAQKWLSYTRKEI 520
           +G N+K+D  +L+ + + M   E   D M+++++LD G R   DI  +AQK+L Y  K  
Sbjct: 398 VGQNLKFDLSLLYSH-LEMEPIEPEADTMILAWLLDPGSRVGLDI--LAQKFLGYQMKSF 454

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMI 577
            ++ K       ++  +   +A E++    QL+  L     K  +E LL   + ++ P I
Sbjct: 455 KETVKKGEDFSSVALEEAAFYAAEDAWATRQLYFRLTELFKKGGLEHLLKEAKEVEFPFI 514

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           +V+  ME  GI++D   L+ +  E+S  L  L + I+ L+G +FN+ S +QLG++LF  L
Sbjct: 515 NVLIAMERLGIRVDTKHLRSLKEELSAELARLTQEIHTLAGTEFNIKSTQQLGNVLFGTL 574

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
               G KTKTG + T    L  +  G++PI++ ILE+R+  K+ STY D L     K  +
Sbjct: 575 GLKGGKKTKTG-YSTNESVLRNL-IGEHPIVEKILEYREHQKMLSTYVDPLLKLAEKDPE 632

Query: 698 -RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+HT +    T TGRLAS +PNLQNIP++++LG+++RRAF++    +L S DYSQIELR
Sbjct: 633 GRIHTTFVQTGTATGRLASKDPNLQNIPVRSELGRRVRRAFVAQEGFRLASIDYSQIELR 692

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH +    L + FE   DIH   A ++FG    + +   R  AK+INF ++YG+   +
Sbjct: 693 LLAHFSGDAALREAFEKGEDIHMATAIKLFG---PEEAAAKRNFAKSINFGLLYGMGSRK 749

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA +L I   EA + I+ YF  FP +  Y+E+ +   ++ GYVET+  RR  +D      
Sbjct: 750 LADELGITTKEAKEIIEAYFAAFPTVRSYLEQIQQQAKEQGYVETLLRRRRVFD-YEGAS 808

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             ++    R A+N   QGSAAD+ + AM+ +   + +  L  +MLLQIHDEL+FE+PE +
Sbjct: 809 GMMKAAILREAVNTVFQGSAADLIKLAMLDIDTMIREEGLEARMLLQIHDELIFEIPEAQ 868

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +    H+ME    P   L VPLK ++ +  +W E
Sbjct: 869 AEETAARFRHTMEH-IYP---LEVPLKCSVSLGGSWDE 902



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/268 (37%), Positives = 147/268 (54%), Gaps = 13/268 (4%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G P   + GF N + +L    +K+    +     D    TFR EIYP+YKANRP  
Sbjct: 24  KNSEGFPTGLLTGFVNFIHQL----QKDHATDYIVFAMDSEGPTFRKEIYPEYKANRPAP 79

Query: 88  PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           PE L+ QLP+     +  G   +    +EADD+IAT T   +++G    I+S+DKDL QL
Sbjct: 80  PEDLMQQLPVAIRWVEMMGFANLSKARYEADDVIATLTKCGKEQGIVAKIVSSDKDLYQL 139

Query: 148 VSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           +      +YD VK++ +D +  ++K+G+ P   V  QAL GDS DN+PG+PGIG KTA+ 
Sbjct: 140 LDDDRVYIYDWVKKKAVDEKGCLEKFGVHPRDFVDFQALIGDSSDNVPGVPGIGPKTASK 199

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L+ E+  LEN+  +       + R+ ++E+ E A LSR+LV L  DV  +  LE    ED
Sbjct: 200 LINEFHTLENLYAHIEEAGTPRIRKLLIEHEEQAFLSRELVRLVDDVFDSCALEEYAFED 259

Query: 267 CNGPRLISFLKAL--EFTKLINRVATTY 292
            N      +L AL  EF K   R A  +
Sbjct: 260 RN------YLAALKEEFEKYEMRQALRW 281


>gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58]
 gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58]
          Length = 878

 Score =  317 bits (813), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 199/590 (33%), Positives = 320/590 (54%), Gaps = 31/590 (5%)

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL-------TK 447
           + D + +F  K +AIA + + +            + L++     S G   +        +
Sbjct: 309 LIDVLQSFEKKSLAIAAAYVGKH----------LVSLALQGIALSDGNRVVYVELKQRPE 358

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG-RSSHDI 505
           E+L  L KFF  E     G+NIK D   L   GI +     D+ L  +++  G R+S   
Sbjct: 359 ELLEILCKFFSREDLSFYGYNIKRDLHALRNAGIVIYNVSCDLALAEHLIHGGARTSFQS 418

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
             ++  W +   + + +    ++P+ ++ ++  +++  E   ++ Q+   L  +L  ++L
Sbjct: 419 LLVSHGWAAVAARYVKEWGHHALPLVQLPENP-EKYFGELVALLPQIKESLLEELQKKQL 477

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             V+  L+ P+  V+  ME  G+ +D   L  +   + ++L  L E IY L+GE FN+ S
Sbjct: 478 TDVFFNLEMPLEHVLFSMERNGMPLDSKKLVSLEHSLEQDLAILTEEIYTLAGEPFNIKS 537

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQL +IL+ KL      K K+    T A+ LE +   ++ II+ +L +R L K+ STY 
Sbjct: 538 PKQLANILYNKLGITPLDKAKS----TRAEVLEALR-EEHKIIEKLLMFRALEKLLSTYV 592

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKK 744
            +LP  +  +TQR+H  +    T TGRLA  +PNLQNIP ++  G  +R AF+ P  T  
Sbjct: 593 KALPRQVAPQTQRIHATFEQMGTATGRLACRDPNLQNIPKRSSRGLSLREAFLVPCETVS 652

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            ++ADYSQIELR+LAH+++   L   F    DIH   A+++F V +++V+ Q R +AKT+
Sbjct: 653 FLAADYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRMYAKTV 712

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYG   + L+  L+IP SEA + I+ YF R+ G+  ++E+T      +  V T+ G
Sbjct: 713 NFGIIYGQQAYGLSKILKIPLSEAQELIQAYFERYSGVARFVEETIAAASHDLKVTTMLG 772

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           R    D  +     IR  + R A+N  IQGSAA++ + AM+ + K ++D KL ++MLLQI
Sbjct: 773 RERVIDNWDE-HPGIRASSGRLAVNTRIQGSAAELIKCAMLEISKEIQDRKLQSRMLLQI 831

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+FEVP+ E+     ++   ME A    + L VPL VNI +  NW E
Sbjct: 832 HDELIFEVPDGEMQEMCALVQEKMEAA----MTLTVPLVVNILIGKNWAE 877



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/285 (35%), Positives = 155/285 (54%), Gaps = 10/285 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LF++D S F++RA++A P + +   G     + GF   + KL+    KE    +   +FD
Sbjct: 12  LFVLDASGFVFRAYFALPEM-KTPLGERAQVVFGFVRSINKLI----KEFSPQYMVAVFD 66

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R EIY +YK+NR K  E L  Q+ LV+      G+  IE+   EADD+IA+ T
Sbjct: 67  GPNNKQSRQEIYTEYKSNREKKVEDLSIQIALVKEYCVLRGLAHIEVDSVEADDVIASIT 126

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184
             A  EG+ V I + DKDL+QL  P   L++  KE+ I   E V++++G+PP+ +    A
Sbjct: 127 TRAVHEGYDVCICTADKDLLQLAGPQVGLWNPWKEQGIFGEEEVLERYGVPPKCIPDYLA 186

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPG+ G G K AA LLQ++G++E IL N   IK    +  + E  E  +LS+
Sbjct: 187 LVGDTSDNIPGVKGCGPKKAAALLQQFGSVEGILENLEHIK-GSNQTMLKEQKEILQLSK 245

Query: 245 KLVMLRTDVPITIPLEHLILED--CNGPRLISFLKALEFTKLINR 287
           KL +L  +V +   +  L   +   +  +L  F     F  L++R
Sbjct: 246 KLAVLDHNVSLPCSIASLTFPNLSVDEEKLQVFYMQQGFKTLVHR 290


>gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
 gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
          Length = 916

 Score =  317 bits (812), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 174/490 (35%), Positives = 273/490 (55%), Gaps = 17/490 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D ++ +Y+LDS RS  D A +A  +L         +  +               A   + 
Sbjct: 439 DTVVAAYLLDSDRSEFDEAYLADTYLQMALPAACGAEGAG--------EDAPAPAARTAA 490

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           + L L   LR  +  E   +V++ ++ P++ V+++ME  G+ +D D L  +S  ++  + 
Sbjct: 491 LTLALVAPLRECMARENAANVFDGIEMPLVPVLAKMERAGMLVDPDRLHSLSEGLATQIT 550

Query: 608 SLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGD 664
            +E +I DL+G E FN+ SP QL  +LF  +  P+    KTK G + T A+ L  +   D
Sbjct: 551 EVERSIRDLAGDETFNIGSPMQLSHVLFDVMGLPTKGLKKTKRGYYSTNAKVLSDL-ARD 609

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           + I++ IL+WR+ SKIKSTY D+L   + +   RVHT Y+   T TGRL+S +PNLQNIP
Sbjct: 610 HEIVRLILDWREKSKIKSTYLDTL-GPLRRGDGRVHTTYNQTITATGRLSSSDPNLQNIP 668

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
            +++LG+ ++ AF +      ++ DYSQIELR+LAH++    L + F    D H   AA 
Sbjct: 669 TRSELGRTVKTAFSAGEGSVFLAVDYSQIELRLLAHLSGDEHLVRAFNEGEDFHAETAAR 728

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV + +V+P +R  AK +NF I+YG   + L+  L I  +EA D I RY+  +PG+  
Sbjct: 729 VFGVPVSEVTPDLRSRAKAVNFGIVYGQQAYGLSQSLHISMAEARDMIDRYYEAYPGVRT 788

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +++      +Q GY ET++GRR H  E+ +    +R   ER A+N P+QG+AADI + AM
Sbjct: 789 FLDNVVARAKQTGYAETMYGRRRHIPELKAKNPQLRGFGERTAMNHPMQGTAADIIKIAM 848

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
             V + LE+   A  M+LQ+HDEL FE P +E+   + ++   ME      ++LRVPL  
Sbjct: 849 ARVSRRLEEEGFAAHMILQVHDELDFECPVDEVERLTAMVRDVMEHV----VDLRVPLIA 904

Query: 965 NIKVSNNWQE 974
                  W +
Sbjct: 905 EASTGITWAD 914



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 150/295 (50%), Gaps = 20/295 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K     ++DG+S ++RAF+A P      DG P NAI GF NM  K++     + +     
Sbjct: 4   KRRTFAVIDGNSLMHRAFHAVPPTMNAPDGRPTNAIFGFLNMFLKMIDAFNPDGVV---- 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD      R E+ P YKA RP +   L  Q P+++    A  +P ++ +G+E DDI+ 
Sbjct: 60  VAFDKGKPRVRMEMLPQYKAQRPPMDPDLHAQFPMIKELLAALNVPILQSEGWEGDDILG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKW 172
           T   + E+ G  + +++ D+D+ QLV+    +  T K          E   D+ H     
Sbjct: 120 TMARLGEEAGCDMLLVTGDRDMYQLVTEHVNVVSTRKGLSDVAIMTPESVDDLYH----- 174

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           GI P  +     L GD+ DNIPG+PGIG K A+ L+ +YG+L+ ++ +A  +K K   EN
Sbjct: 175 GITPALVPDFYGLKGDTSDNIPGVPGIGPKKASALIAQYGSLDEVIAHADEVKGKM-GEN 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           +  + + A LSRK+  +RTD P+ +  +       +   + + L  L  T + NR
Sbjct: 234 LRAHIDDALLSRKVATIRTDAPVELDFDETSFPAFSADEVSAALGTLGITAMQNR 288


>gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 874

 Score =  317 bits (811), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 188/491 (38%), Positives = 287/491 (58%), Gaps = 25/491 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L  Y+L    S  D+A  A  +L  T      S +   P         + +A+  + 
Sbjct: 403 DLELADYLLHPEESRRDMARAAFAFLGDT-----TSAEGLSP---------EAYAVHEAL 448

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           +  +L  ++  +L  ++L+H+Y  ++ P++ V++ ME TG+ +++  L+   A  ++ + 
Sbjct: 449 LSARLQPIMETELAAQELMHLYRTVELPLVPVLAAMEQTGVCVNRAALEHERAAATERID 508

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDN 665
           +L   I+ L+G +FN+SSPKQLG+ILF +L    G   KTKTG + T A+ LE +    +
Sbjct: 509 ALAREIHTLAGTEFNISSPKQLGEILFEQLGLGDGKVKKTKTG-YSTNAETLEGLR-DQH 566

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           PII  +L +R  +K++STY D +   I   T RVHT ++   T TGRL+S +PNLQNIP+
Sbjct: 567 PIIDKVLTYRMWTKLRSTYLDGIGALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPV 626

Query: 726 KTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           +T+ G+ +R A  +P      L+SADYSQIELRILAH++    L   F    DIH   AA
Sbjct: 627 RTEEGRAVR-ALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRQGQDIHARTAA 685

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           E+FGV ++ V+P+ RR AK +NF I+YG+S F LA  L I R EA  YI RYF R+ G+ 
Sbjct: 686 EVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHGVR 745

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +++K       NGYV T++GRR     + S     R+  ER A+N PIQG+AAD+ + A
Sbjct: 746 TFLDKIVADAHANGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIKIA 805

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+  + +L+   + +++LLQ+HDELV EV  EE  T ++++  +M  A      L VPL 
Sbjct: 806 MVRAYDALQAAGVKSRILLQVHDELVLEVTTEETETVTELLRTAMSGAA----ELAVPLA 861

Query: 964 VNIKVSNNWQE 974
           V++    NW E
Sbjct: 862 VDVHSGKNWAE 872



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/250 (38%), Positives = 142/250 (56%), Gaps = 9/250 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DGSS  +RAFYA  L      G+  NA+ GF  ML KLL    KE   +   + FD  
Sbjct: 8   VIDGSSLFFRAFYALQLPPNAR-GIHTNAVHGFAMMLVKLL----KELSPTQIVIAFDKS 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR  +YPDYK  R K PE L+ Q+PL++   +A GI  +E+  +EADDII T    A
Sbjct: 63  RTTFRTALYPDYKGTRDKTPEELIAQIPLLKELAEALGISFLELDDYEADDIIGTLAVQA 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCLQA 184
             EG    +I+ D+D +QL+ P   +  T K     +  D     +++G PP +++ ++ 
Sbjct: 123 AAEGVETRVITGDRDALQLIRPQLTVLLTKKGISETKAYDTAIFEEEYGFPPIRLIDMKG 182

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PG+G KTA  LL  Y ++EN+L +A+ +  KK   ++ +Y   A LS+
Sbjct: 183 LMGDSSDNIPGVPGVGPKTATKLLLAYESIENVLDHAAEVSGKKLSTSLAKYRAQALLSK 242

Query: 245 KLVMLRTDVP 254
           +L  +   VP
Sbjct: 243 QLATIECHVP 252


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score =  317 bits (811), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 189/520 (36%), Positives = 299/520 (57%), Gaps = 25/520 (4%)

Query: 465 IGHNIKYDKLVLHRYGISMRG------FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
           +GHNIK+D   LH + I   G      F D M+++++++   S+  +  +++K L +   
Sbjct: 396 VGHNIKFD---LH-FVIRFLGEGELDIFADSMILAWLINP-ESALSLDKLSEKLLEHKMI 450

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI---VEKLLHVYERLDKP 575
              +S K       ++  +   +A E++ + L+L+ L    L     E L+   + ++ P
Sbjct: 451 TFKESVKKGETFASVALEEACNYAAEDAYITLRLYYLFLEMLKDQGAEHLIEEAKEVEFP 510

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
            I  + +ME+ GI+++   L+Q  AE   +L  L + IY+L+  +FN++S +QLG++LF 
Sbjct: 511 FIKTLLKMEMHGIELNSLFLEQFLAEAKDSLSELTKKIYELASLEFNINSTQQLGNVLFE 570

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK- 694
           +L  P+  KTKTG + T  + L  +  G++ II  +LE+R++ K+ STY + L     + 
Sbjct: 571 QLGLPTSKKTKTG-YSTDEKVLNSL-LGEHEIIPYLLEYREVYKLYSTYIEPLLKLSQQD 628

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +  R+HT +    T TGRL+S  PNLQNIP +T LG KIR AF++P  KKLI  DYSQIE
Sbjct: 629 KESRIHTSFVQTGTTTGRLSSKNPNLQNIPTRTALGTKIREAFVAPEGKKLIGIDYSQIE 688

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LAH  +   L + F    DIH   A  +FG   E+ +P  R  AKT+NF ++YG+  
Sbjct: 689 LRLLAHFTQDRVLVEAFMQDKDIHMQTAIALFG---EEDAPLKRNVAKTVNFGLLYGMGQ 745

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            +L+  L+I  +EA + I+RYF  FP +  Y     +F ++ GYVET+  RR ++D   S
Sbjct: 746 KKLSETLKITTAEAKEIIERYFSSFPSVKSYFRSIVDFSKEAGYVETLLKRRRYFD-YES 804

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                R   ER A+N+  QGSA+DI + +M  +HK +ED KL  KMLLQIHDEL+FEV  
Sbjct: 805 ASPMFRAAYEREAVNSIFQGSASDIIKLSMNKIHKLIEDEKLNAKMLLQIHDELIFEVD- 863

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              T+ ++I+    +      + L +PLK ++K+ + W E
Sbjct: 864 ---TSEAEILGEKFKNIMQNIMPLNIPLKASMKIGDKWSE 900



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/265 (35%), Positives = 140/265 (52%), Gaps = 6/265 (2%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D   F +R+FYA P   +   G P   + GF N +  L    +K+  + +     D  
Sbjct: 7   IIDTFGFFFRSFYALPQHLKNSQGFPTGLLTGFTNFISTL----QKQHDSDYIVFAIDTK 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             +FR EI P+YKANR   P+ L  QLP+        G   +   G+EADD+IAT    A
Sbjct: 63  GDSFRKEIDPNYKANRQPPPQELSMQLPIAIEWIDKMGYKTLGFDGYEADDVIATVVRFA 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           +++ + V ++S DKDL QL+      L D +K++ +D +   KK+GI P++ +  Q++ G
Sbjct: 123 KEKSYNVRVVSHDKDLFQLIDDGRVVLVDAIKKQVMDEDECFKKYGISPKQFIDYQSILG 182

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           DS DNIPG+ GIG   A  LL EY  L+NI  N   IK    ++ +LE+ E A +S+KLV
Sbjct: 183 DSADNIPGVKGIGKVGAEKLLIEYETLDNIYANIENIKPLGIQKKLLEFKEQAYMSKKLV 242

Query: 248 MLRTDVPITIPLEHLILEDCNGPRL 272
            L   V  +   E   + D   P L
Sbjct: 243 TLSCSVFESFDFEEFKM-DIENPFL 266


>gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a]
 gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a]
          Length = 884

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 179/533 (33%), Positives = 291/533 (54%), Gaps = 11/533 (2%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503
           LT   L+ L  +  + H  K  H++K   L L   G+++ G   D  L +Y+   G+ S 
Sbjct: 357 LTPADLAALGGWLADAHQPKAAHDVKGPMLALAELGLTLAGVTSDTALAAYLALPGQRSF 416

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           D+A +  ++L +    +  +    + +D   +++        +   L+L   L   L   
Sbjct: 417 DLADLVARYL-HRDLAVEPAGNGQLTLDGSGEAEESHADAVRARACLELADELDADLERR 475

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
               +   ++ P++ V++ ME  GI  DQD L ++       + ++    +++ G  FNL
Sbjct: 476 SAAVLLRDMELPLVTVLAGMERAGIAADQDHLTELQKHYGGEVTAVAAQAHEIVGRTFNL 535

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKS 682
            SPKQL  ILF  L  P   K KTG + T A  L  +    D+P++  +L  R ++++K 
Sbjct: 536 GSPKQLQQILFDDLGLPKTKKIKTG-YTTDADALAWLAVQSDHPLLPVLLRHRDVARLK- 593

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741
           T  DSL   I+    R+HT ++     TGRL+S +PNLQNIPI+T  G++IRRAF+  P 
Sbjct: 594 TVVDSLLPMIDD-AGRIHTTFNQMIAATGRLSSTDPNLQNIPIRTAEGRQIRRAFVVGPG 652

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            + L++ADYSQIE+RI+AH++    L + F +  D+H  VAAE FG+ + +V P++RR  
Sbjct: 653 YETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRRI 712

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +++ + YG+S F LA+QL I   EA +++  YF RF G+ +++       R++GY ET
Sbjct: 713 KAMSYGLAYGLSAFGLASQLGIAPDEAREHMDAYFGRFGGVRDFLRGVVERARRDGYTET 772

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           + GRR +  ++ S  +  R + ER A+NAPIQGSAADI + AM+ V ++L     A+++L
Sbjct: 773 MLGRRRYLPDLTSDNAQRRQMAERMALNAPIQGSAADIIKIAMLGVDRALRAGGHASRLL 832

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDELV E+   E      ++   M  A      + VPL V++     W +
Sbjct: 833 LQVHDELVLEIAPGEYDAVEALVRAEMTSA----YTMSVPLDVSVGAGRTWDD 881



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 10/286 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  YRAFYA P+ +     G P NA+ GF +ML  +L++ +     +H AV +D
Sbjct: 1   MLLDGHSLAYRAFYALPVENFSTTTGQPTNAVYGFTSMLINVLRDEKP----THVAVAWD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+  Y +YKA R + P   + Q+ L+     A  +P +   G+EADD+IAT   
Sbjct: 57  LPTPTFRHTQYAEYKAGRSETPADFVGQVSLIHQVCDALAVPGVSAAGYEADDVIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                G  V +++ D+D +QLV     +  T K      +   + V  K+G+ P +    
Sbjct: 117 AGAAVGMDVLVVTGDRDALQLVDERVTVLMTRKGISDMTRFTPDEVQAKYGLSPVQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+P +PG+G KTA   +Q++G+L  ++  A  I  K         A   R 
Sbjct: 177 AALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVDRADEIGGKTGASLRAHLASVIR- 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +R L  L  DVP+ +  + L L   +   +      L+F  L  R+
Sbjct: 236 NRSLTELSRDVPLPVGPDELRLRPWDREAVHQLFDTLQFRVLRERL 281


>gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 931

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/410 (38%), Positives = 255/410 (62%), Gaps = 2/410 (0%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  + E L+ P+I V++ ME+ GI+I++       AE+ K L  L + +Y ++G +FN+ 
Sbjct: 522 LSALMEELEMPLIPVLADMELRGIRINRAEFSGFLAEVQKELDRLTQEVYAVAGGQFNIR 581

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +QLG++LF  L   +G+KTK GQ  T+   LE++  G +P+I  ILE+R+L K++STY
Sbjct: 582 SSQQLGELLFGTLGLKAGSKTKGGQASTSQAVLEKL-AGKHPVIDTILEYRKLEKLRSTY 640

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            + LP  + +   R+HT ++  +T TGRL+S +PNLQNIP++  +GQ++RR F + P  K
Sbjct: 641 LEPLP-RLAQENDRIHTTFNQLATATGRLSSSQPNLQNIPVRGPMGQRMRRCFTAAPGNK 699

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L++ADYSQIELR+LAH++    L + F  + DIH   A  ++ V    V+P  RR+AKTI
Sbjct: 700 LVAADYSQIELRVLAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVTPDQRRNAKTI 759

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF +IYG+ P +LA +L++  +EA ++I+RYF +   + E+ +  +   R++G+V T+ G
Sbjct: 760 NFGLIYGMGPQKLAQELKVTLNEAKEFIERYFSKLSHLKEFYDNVEQSAREHGFVTTLAG 819

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR    EI+S  + +R+   R AIN  +QGSAADI + AM+         +L   ++LQ+
Sbjct: 820 RRRLLPEIHSDNNQLRSQARRQAINTVVQGSAADIIKIAMLKAAADETLQQLNAALILQV 879

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+ E P++    A++ +   M         L VPL V+  + +NW +
Sbjct: 880 HDELLLEAPQDAAEAAAKRLADIMSSVRPGGAALDVPLAVDYGIGDNWGQ 929



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 151/284 (53%), Gaps = 9/284 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+DGS+FI+R FYA   + R  DGLP NA+     +L KLL    +E   ++ A   D
Sbjct: 80  VYLIDGSAFIFRGFYAFQNMQRS-DGLPTNALFIVLRILLKLL----REEQPAYAAFFMD 134

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y  YKANR   PE L+ QL  +R   ++ GIP     G EADD IA+   
Sbjct: 135 GKGPTFRHALYDQYKANRSATPEPLVQQLDPIRRGVRSLGIPLEVSDGCEADDCIASLAA 194

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184
             + E   V I+  DKDL Q +     L+D   K+EK+ D+    ++ G+ P +    QA
Sbjct: 195 KFKSE-RPVIIVGADKDLKQCIDDNVYLWDPGAKQEKLLDLAGFTEETGLSPSQWPDFQA 253

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + GDS DNIPG+PG+G KTAA +  E+  LE I  N   +K   +++   ++ +   L R
Sbjct: 254 VIGDSSDNIPGVPGVGPKTAAQIFAEFPTLEAIQENEKALKPGVQKKFAGQW-DNIYLYR 312

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +L  L T    ++ L+ + ++  +     +FL+  E   L+  +
Sbjct: 313 RLTTLDTGRCTSLALKDMTVQSVDADNAAAFLREFELRTLLREL 356


>gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 635

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 215/648 (33%), Positives = 342/648 (52%), Gaps = 66/648 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML +L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKRLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                    TTE               +K +Q+ + S     +  E TP      ++Q  
Sbjct: 300 --------QTTEQP-------------VKINQYQATSQDQRAV--ENTP------KIQ-- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D +  T + ST         L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
           +GI ++G E D ML+SY L+S GR  H++  +A+++L +     + +    KS +  ++I
Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P
Sbjct: 553 DALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLP 600


>gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 870

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 193/589 (32%), Positives = 319/589 (54%), Gaps = 29/589 (4%)

Query: 393 KIITDTMDAFHSKPIAIAISTLDQK--DDTSFK-VETIFIDLSVHTSQDSTGKNTLTKEI 449
           K + D ++A    PIAI  + +D +      F+  +  ++DLS     D   +N L +  
Sbjct: 301 KALRDFLEAGKGAPIAIQPAVVDGQAVGLALFRGAQAAWLDLS---GLDEAAENVLAQ-- 355

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMS-YVLDSGRSSHDIASI 508
                 F  +    KI H+ K    +L   G+ + G  D  L+S Y++   R SHD+  +
Sbjct: 356 ------FLADAAAPKIFHDAKATMHLLADRGLKLAGIHDDTLISAYLIQPDRRSHDLVDV 409

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            Q  L Y    + +++K  + +   +D  + E A+  +  I  L   L  KL  +    +
Sbjct: 410 VQYHLKYAVP-VHQAKKGELDLGLTAD--LAEPALAQAQAIHDLSAFLATKLAEKHADKL 466

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
              ++ P+I V+ +ME  G+ +D D L ++ A  ++ +     + +   G + NLSSPKQ
Sbjct: 467 AAEMELPLIPVLFEMERAGVAVDVDRLNELRAHFTEQVDQATNDAFAAIGHEVNLSSPKQ 526

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ--INCGDNPIIKNILEWRQLSKIKSTYAD 686
           L  +LF +L  P   K KTG + T A+ L    +  G +P +  ++ +R   K++ T  D
Sbjct: 527 LQVVLFEELDLPRTKKIKTG-FTTDAESLADLLVKTG-HPFLVALMAYRDAIKLRQT-VD 583

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKL 745
            L    ++   R+HT Y+     TGRL+SL PNLQNIP++++ G++IR  F +    + L
Sbjct: 584 GLLKATHE-DGRIHTTYAQTVAATGRLSSLNPNLQNIPVRSEEGRRIRDVFMVGEGYQSL 642

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ++ DYSQIE+RI+AH+++   L + ++N  D+HR V + +F V  E+V+ +MR   K ++
Sbjct: 643 LTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHRYVGSRVFNVEPEEVTSEMRSKVKAMS 702

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           + + YG+S F L+ QL+I   EA   +K YF RF  +  Y+    +  R++GY ETIFGR
Sbjct: 703 YGLAYGLSSFGLSKQLKIGVDEARKLMKDYFDRFGAVRTYLRSVVDQARKDGYTETIFGR 762

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  E+NS    +R+I ERAA+NAPIQGSAAD+ + AM+ + + L+  +  ++MLLQ+H
Sbjct: 763 RRYLPELNSSDRRLRDIAERAALNAPIQGSAADLVKVAMLRIDEELKAGEYKSRMLLQVH 822

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+ E+ E E+    +++   M +A      L VPL V   V   W +
Sbjct: 823 DELILEIAEGELEPVQELVTREMGQAA----ELLVPLDVQPGVGRTWHD 867



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/277 (36%), Positives = 151/277 (54%), Gaps = 10/277 (3%)

Query: 17  YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           +RAFYA P  +     G   NA+ GF +ML  +++  +     +H AV FD    TFR+ 
Sbjct: 3   FRAFYALPAENFATSTGQHTNAVHGFVSMLLTMIRQQKP----THVAVAFDLDTPTFRSL 58

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
            Y +YK  R K PE    Q+ L++   +A  IP+I ++ FEADDI+AT     E+ GF V
Sbjct: 59  EYTEYKGGRNKTPEEFYGQIDLIQEVMKAMNIPSITLESFEADDILATLATQGEEAGFNV 118

Query: 136 TIISTDKDLMQLVSPTT-CLYDTVKEEKI---DIEHVIKKWGIPPEKMVCLQALTGDSID 191
            ++S D+D  QL++  T  LY       I   D + V  K+ + PE+   L AL G++ D
Sbjct: 119 LVVSGDRDAFQLITDKTLVLYPKKGISDIPPMDADAVEAKYFVRPERYSDLAALVGETAD 178

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
           N+PG+PG+G KTAA  +  YG+L  IL NA  IK  K  + + E+ +    +R+L  L+ 
Sbjct: 179 NLPGVPGVGPKTAAKWINLYGDLAGILENAENIK-GKVGDALREHVDNVTRNRRLNQLKH 237

Query: 252 DVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           D+ + + LE + L+  N   + +   ALEF  L  R+
Sbjct: 238 DLELPVTLEQMELQAPNREEIENLFDALEFNTLRKRL 274


>gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424]
 gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424]
          Length = 873

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/425 (40%), Positives = 264/425 (62%), Gaps = 8/425 (1%)

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           I  L  +   +L  E +  +Y+ ++  +  V++ ME  GI + +  L+ +S E+ + +  
Sbjct: 452 IFDLKEIQSARLKEENMDSLYKNIEVKVARVLANMEYEGIHVSKKALEDMSDELDERIKI 511

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           LE +I+ L+G +FN++SPKQLG +LF  L  P   KTKTG + T+ + LEQ+    + II
Sbjct: 512 LEASIHTLAGSEFNIASPKQLGIVLFEDLGLPPVKKTKTG-YSTSVEVLEQLQHS-HEII 569

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
             I+E+R L+K+ STYA  L   I  R  ++HT Y    T TGRL+S+ PNLQNIP + +
Sbjct: 570 PLIMEYRVLTKLNSTYAKGLVKDIT-RKGKIHTRYEQTLTQTGRLSSVNPNLQNIPTRIE 628

Query: 729 LGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            G+KIR+AFI     ++I S DYSQIELR+LAH+A+   +   F + LDIH   A+E+ G
Sbjct: 629 EGKKIRKAFIPASDDRVILSIDYSQIELRVLAHMAQDKGMIDAFTHDLDIHTKTASEVNG 688

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V++++V+P MRR AK +NF I+YGIS F L+  L I R  A ++I +Y   F G+++Y+ 
Sbjct: 689 VSLDEVTPTMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFSGVNKYMT 748

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
               F +++GYVET++ RR    EIN+    + ++N R A+N PIQG+AADI + AMI+ 
Sbjct: 749 DIVEFAKEHGYVETLYNRRRALPEINAKNKIVASLNARLAMNTPIQGTAADIIKLAMINA 808

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
              +E  K+  K+LLQ+HDEL+F+V ++ +   +  +V  ME+A    + L V LK    
Sbjct: 809 FDYIEKTKVDAKLLLQVHDELIFDVNKDVVDEFTIEMVKIMEEA----VELDVKLKAEAS 864

Query: 968 VSNNW 972
             ++W
Sbjct: 865 SGSSW 869



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/320 (38%), Positives = 175/320 (54%), Gaps = 15/320 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG+S  YRAFYA P L  K  GL  N++ GF  ML ++L     E I   +A++
Sbjct: 2   DKIILLDGNSLSYRAFYAMPALQNKS-GLYTNSVYGFTLMLERML-----EDIKPKYALV 55

Query: 65  -FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L+ Q   VR    ++GI   E   +EADDII +
Sbjct: 56  AFDKGKQTFRHKTYQDYKGTRDKTPSELVEQFGYVRELLDSYGIKYEEHFDYEADDIIGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEK 178
           Y  +AEK G  V IIS DKDL QL S    +Y T +    +++H     + +K+G+ PE+
Sbjct: 116 YAKLAEKAGLEVIIISGDKDLTQLASDNITIYYT-RRGVTEVDHYTPEFINEKYGLSPEQ 174

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD  DNIPG+ GIG KTA  LL EY  +EN+L N   I  KK +E + E  E
Sbjct: 175 IIDMKGLMGDKSDNIPGVAGIGEKTAIKLLAEYKTVENVLDNIDNISGKKLKERLAEGKE 234

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS++L  + T+VP+   LE L   + N  +     + LEF   + ++A   D D   
Sbjct: 235 DALLSKELATIFTEVPVENKLEDLTFSE-NRSKKKELFEKLEFVSFLKKLAENNDVDVDG 293

Query: 299 IEPVVLD-INTTENKGIAIE 317
            E   L+ IN  E   ++ E
Sbjct: 294 KEEKELEIINADEKTELSFE 313


>gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
 gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
          Length = 931

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 181/490 (36%), Positives = 272/490 (55%), Gaps = 19/490 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D ++ +Y+LDS RS    A +A+ +L  +      + +   P D +S       A   + 
Sbjct: 456 DTVVAAYLLDSVRSDFTDAYLAETYLHASLPS--AAGEDGAPADAVS------IAARGAW 507

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           +   L   L   L  +    ++ +++ P++ V++ ME  G+ +D   L   S E+   + 
Sbjct: 508 LARTLREPLAAALEAQGADAIFTKIEMPLVRVLASMERAGMYVDPARLAAQSDELVGQIQ 567

Query: 608 SLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGD 664
           +LE  I +L+G E+FNLSSP QL  ILF  L  P+    KT+ G + T A+ LE +   +
Sbjct: 568 ALEARIRELAGGEEFNLSSPMQLSRILFDTLGLPTAGLKKTQRGYYSTNAKVLEDL-AKN 626

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           + I++ ILE+R+ +KIKSTY D+L   + +   RVHT Y+   T TGRL+S  PNLQNIP
Sbjct: 627 HEIVRLILEFREKTKIKSTYLDTL-GPLRRHDGRVHTTYNQTITATGRLSSSSPNLQNIP 685

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
            +++LG  ++RAF        ++ DYSQIELR+LAH++    L   F    D H   AA 
Sbjct: 686 TRSELGHAVKRAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVSAFNEGEDFHAETAAR 745

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV +++V+PQ+R  AK +NF I+YG   + L+  L IP +EA + I  YF  +PG+  
Sbjct: 746 VFGVPVDEVTPQLRSRAKAVNFGIVYGQQAYGLSQTLDIPMAEAREMIDAYFRAYPGVRT 805

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+++T  F +Q GY ET++GRR    E+  P    R   ER A+N P+QGSAADI + AM
Sbjct: 806 YLDETVTFAKQTGYAETMYGRRRPIPELRIPAQ--RMFGERTAMNHPMQGSAADIIKIAM 863

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           + V + L       KM+LQ+HDEL FE P  E+     ++   ME        LRVPL  
Sbjct: 864 VHVAERLRAEGFTAKMILQVHDELDFECPVGEVDRLIAMVREEMEGVA----ELRVPLIA 919

Query: 965 NIKVSNNWQE 974
           +  +   W E
Sbjct: 920 DASIGETWAE 929



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 157/320 (49%), Gaps = 21/320 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S ++RAF+A P      DG P NA+ GF NM  K++     + +       FD  
Sbjct: 15  VIDGNSLMHRAFHAVPPTMNAPDGRPTNAVFGFLNMFLKMVDEFTPDGVV----CAFDKG 70

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R E+ P YKA RP +   L  Q P+++    +  IP +E++G+E DDI+ T     
Sbjct: 71  RPKVRMEMLPQYKAQRPPMDTNLRAQFPMIKELLASLSIPVVELEGWEGDDILGTLARRG 130

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKWGIPPEK 178
           E  G  + +++ D+D+ QLV+    +  T K          E   D+ H     GI PE 
Sbjct: 131 EAAGCDMYLVTGDRDMYQLVTDHVHVVSTRKGLSDIAIMTPESVDDLYH-----GITPEL 185

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +     L GDS DNIPG+PGIG K A+ L+ +YGNL+ ++ +A  +K  K  EN+  + +
Sbjct: 186 VPDFYGLKGDSSDNIPGVPGIGPKKASALIAQYGNLDEVIAHADEVK-GKMGENLRAHID 244

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +SRK+  + TD PI   L  +     +   + + L  +    + NR        AA 
Sbjct: 245 DALISRKIATIMTDAPIECDLTEVAFPAFDAAAVSAALGGIGIMAMQNRFLALLGEGAAA 304

Query: 299 IEPVVLDINTTENKGIAIET 318
           + P V  +   E   +A++ 
Sbjct: 305 V-PTVASLEMPEVLRVALDA 323


>gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1]
          Length = 845

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 278/460 (60%), Gaps = 12/460 (2%)

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNV--ILQLWLL---LRPKLIVEKLLHVYERLDK 574
           +L +  S   I+K+       +  EN     +L + LL   LR  +  E +  + E+++ 
Sbjct: 390 LLNTSASDYAIEKLCAEYGVHYYSENGEFADLLSIELLIKKLRSVIDKEGMTELLEKIEL 449

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+ +V++ ME  GI ID+  ++     +++ +   ++ +YD +G  FN++SPKQLG +LF
Sbjct: 450 PLTEVLASMEDIGICIDKQGVEDFGTYLTEMIEETQQMVYDDAGHSFNIASPKQLGTVLF 509

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            ++  P+  KTK+G + T A+ LE++   D PI+ N+L++RQ +K+ STY   L + I  
Sbjct: 510 EEMGLPAKKKTKSG-YSTNAEVLEELR-NDAPIVDNVLKFRQYTKLNSTYVVGLLDKI-A 566

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
              R+HT++    T TGR++S EPN+QNIP++T+LG ++R+ F++P  +KL+ ADYSQIE
Sbjct: 567 DDGRIHTWFRQTETRTGRISSTEPNMQNIPVRTELGAQMRKFFVAPKGRKLVDADYSQIE 626

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR++AH+     + + F +  DIH   AA++F +    V+P+MR  AK +NF IIYGI  
Sbjct: 627 LRVMAHLCGDKNMIEAFNSGEDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGIIYGIGA 686

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F LA  +    ++A  YI  Y  ++  ++E++E T +   ++GYV T+FGR+    E++S
Sbjct: 687 FSLAKDIGTSVAKAKKYINDYLAKYEKVNEFMETTVDNAFKDGYVTTMFGRKRRIPELSS 746

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               ++   +R A+N P+QG+AAD+ + AMI+V+  L+   +  K++LQ+HDEL+ E  E
Sbjct: 747 SNKMMQAAGKRIAMNTPVQGTAADLIKIAMINVYNRLKAEDIDAKLILQVHDELILEASE 806

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   A+Q++   M+        ++VPL V++   ++W E
Sbjct: 807 SDAEHAAQLLKEEMQNV----YEMKVPLSVDVHTGDSWYE 842



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 12/290 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L  +DG+S + RAFY   LLS K+ G+  NAI+GF N+  K + N   +++A    V FD
Sbjct: 3   LLAIDGNSILNRAFYGIKLLSNKN-GVFTNAISGFMNIYLKHINNLAPDAVA----VAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + TFR++    YKANR  +PE L  QLPLV+      G+  +E +G+EADDI+ T + 
Sbjct: 58  LRSPTFRHKAVASYKANRKGMPEELAQQLPLVKELLTLMGVKIVECEGYEADDILGTLSK 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVCL 182
                     +++ D+D +QL+     +   + + K DI    +  ++ +G  P K++ L
Sbjct: 118 ACSDNKDECYVLTGDRDSLQLIDDNVTV--VLAKTKEDIFYTPDRFMEDYGFEPIKLIDL 175

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-QKKRRENILEYAETAR 241
           +AL GDS DNI G+ GIG KTA+ L++EYG +EN+          K  +  +   AE+A+
Sbjct: 176 KALMGDSSDNISGVAGIGEKTASTLIKEYGTIENLYEKYEDSDLTKSVKTKLANGAESAK 235

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            S+ L  +  + P+   ++H I    +   +   L  LE  +L+ ++  +
Sbjct: 236 ESKWLATIIRNAPVDTDIQHYIPSAPDSAGISRLLTELEMFRLLEKLGIS 285


>gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129]
 gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae]
          Length = 899

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/512 (34%), Positives = 296/512 (57%), Gaps = 15/512 (2%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H  K    +L   G ++ G E D  +  Y+L  G+ ++D+  + Q+ L   ++++     
Sbjct: 396 HEAKAVFHMLAGRGYTLNGIEHDTAIAGYLLRPGQRTYDLKDVYQRHL---QRQLGGGSS 452

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            S  +  +     QE  ++++  IL+L   L  +L       +Y  ++ P++ V+++ME 
Sbjct: 453 ESGQLSLLDAPDAQE-LVDSAVAILELSKSLTAQLQAIDAYELYREMELPLVGVLARMEA 511

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGAK 644
           TGI +D   L++      + +   E    +L+G E  NLSSPKQL  +LF  L  P   K
Sbjct: 512 TGICVDVATLREQRDIFVEQVKEEESAARELAGDETLNLSSPKQLQVVLFDTLGLPKTKK 571

Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           TKTG + T A+++E +   + +P + ++L  R+  K+K+T  D L   +     R+HT +
Sbjct: 572 TKTG-YSTAAKEIESLAVKNPHPFLDHLLAHREFQKMKTTL-DGLIKAVGD-DGRIHTTF 628

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762
           +     TGRL+S EPNLQNIP++T  G+KIR AF+     K L++ADYSQIE+R++AH++
Sbjct: 629 NQTVASTGRLSSTEPNLQNIPVRTPAGRKIRSAFVVGQGYKSLLTADYSQIEMRVMAHLS 688

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L + ++   D+H  V +++F V +++V+P++RR  K +++ ++YG+S F L+ QL 
Sbjct: 689 EDPGLIEAYQTGEDLHNFVGSKVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLN 748

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP  EA   ++ YF RF G+  Y+++     R++G+  T+FGRR +  E++S     R  
Sbjct: 749 IPAGEAKVIMESYFERFGGVKRYLDQVVEQARKDGFTSTLFGRRRYLPELSSDNRVAREN 808

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ERAA+NAPIQG+AADI + AM+ V   L      +++LLQ+HDELV EV   E     Q
Sbjct: 809 AERAALNAPIQGTAADIIKIAMLRVDARLTAENCQSRVLLQVHDELVLEVASGEQEKVQQ 868

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++   M+ A    I+LRVPL+V+  V  NW+E
Sbjct: 869 LVEEEMDAA----ISLRVPLEVSAGVGTNWEE 896



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 152/296 (51%), Gaps = 11/296 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N L L+DG S  +RAFYA P  +     G   NA+ GF +ML  LL     E   +H AV
Sbjct: 16  NRLMLIDGHSMAFRAFYALPAENFSTSGGQATNAVYGFLSMLSSLL----VEEKPTHVAV 71

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E++P+YKA R   P     Q+ +++   +  GI  +E + FEADDIIAT
Sbjct: 72  AFDVGRQTFRTEMFPEYKAQREAAPPEFKGQVEIIKEVLETLGITTLEKENFEADDIIAT 131

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A   GF   I++ D+D  QLV+ +T +   ++      +   E V +K+G+ P + 
Sbjct: 132 LATAAGPLGFDTYIVTGDRDSFQLVNESTTVLYPMRGVSVLHRFTPEAVEEKYGLTPVQY 191

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD  DN+P IPG+G KTA   + +YGNL+++L +A  IK K    +  E  + 
Sbjct: 192 PDFAALRGDPSDNLPNIPGVGEKTATKWIVQYGNLDSLLAHADEIKGKAGN-SFRERLDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDC 294
            R++R L  +  D+ +    + L  +  +   + S    LEF + L +RV    D 
Sbjct: 251 VRMNRTLTEMIKDLELPYAPDQLERKPADASAIASKFDELEFGSNLRDRVIHAVDA 306


>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
 gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 868

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 173/425 (40%), Positives = 255/425 (60%), Gaps = 2/425 (0%)

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           + L++W  LR KL   +LL + + L+ P+I V++ ME  G+ +D   LK    E+  +L 
Sbjct: 442 IALKVWEQLRNKLKTAQLLELMDSLELPLIPVLADMEAVGVVLDDQNLKIFLVEVQNSLD 501

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            L E IY  +G  FN+ S +QLGDILF +L+ P+  KT+ GQ  T+ + LE+++ G +PI
Sbjct: 502 HLTETIYHEAGGSFNIRSAQQLGDILFNQLELPAAKKTRGGQASTSQEVLEKLS-GQHPI 560

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           I  ILE+R+L K++STY + LP  I K   RVHT ++  +T TGRL+S  PNLQNIPI+ 
Sbjct: 561 IDTILEYRKLEKLRSTYLEPLPRLIGK-DGRVHTTFNQLATATGRLSSSNPNLQNIPIRG 619

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            LGQ++R  F +     LISADYSQ+ELR+LAH +K   L   F    DIH   A+ ++ 
Sbjct: 620 SLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTAFLEGADIHTRTASLLYE 679

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            + E+V+   RR+AKTINF +IYG+ P +LA +L    +EA  +I+RYF     I ++ +
Sbjct: 680 KSQEEVTADERRNAKTINFGLIYGMGPQKLAQELNTTLNEAKKFIQRYFEHLQAIKKFYD 739

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           + ++  ++ GYV TI GRR    +I+S    ++ +  R AIN  IQGSAADI + AM++V
Sbjct: 740 QVEHSAKEYGYVTTIAGRRRLLPDIHSENIQLQALARRQAINTIIQGSAADIIKIAMLTV 799

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H      K+  +++LQ+HDELV E PE+      + I   M         L VPL     
Sbjct: 800 HGDTTLAKMDAQLILQVHDELVVEAPEDNAKEVGKRIAMLMSNVTPGGKPLIVPLVTQWS 859

Query: 968 VSNNW 972
           +  +W
Sbjct: 860 IGYDW 864



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 149/286 (52%), Gaps = 15/286 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E+ ++L+DGS+FIYR FYA   + R  DG P +A+     +  K+L    +E    +F  
Sbjct: 9   EDPIYLMDGSAFIYRGFYANQSMQRS-DGFPTSALFNIGRIFLKIL----REEQPKYFVF 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + D P   FR+ ++P YKA R   PE L+ Q+  ++    + G+        EADD +A+
Sbjct: 64  VLDGPGTNFRHTLFPLYKAQRSPAPEALIKQIEPIKRLVISLGLCLTVASNSEADDCLAS 123

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKIDIEHVIKK-WGIPPEKMVC 181
             +   ++ + + +I++DKDL Q +     ++D   K EKI      K+  G+ P +   
Sbjct: 124 IAH-RYRDNYPIVLIASDKDLKQCLDKNVLMWDPASKAEKITTLKSFKEDEGLLPSQWPD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAE 238
           +QA+ GDS DNIPGIPGIG KTA  + Q++ +LE+I  N S +    QKK   ++    +
Sbjct: 183 VQAIIGDSSDNIPGIPGIGLKTAKKIFQDFPSLESIKDNFSSLPLPVQKKFDGHL----D 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
              L R+L  L T   I + ++ + +   N    ++ L+  E   L
Sbjct: 239 AMFLYRQLTTLSTTECIDLQIDTIKVGPINVQETLTILREFELVSL 284


>gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B']
          Length = 865

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 183/522 (35%), Positives = 303/522 (58%), Gaps = 13/522 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511
           +K FFE ++  KI HN K  + +L+RY I++ G   D  + SY+++  +S ++++  A  
Sbjct: 351 VKNFFEAKNISKILHNSKDLRHILYRYQINIHGNIFDTAIASYLINPLQSDYELSVAATG 410

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +      ++L + K+ I    ++   +       ++ +  L      +L    +L ++  
Sbjct: 411 YDIKHVDQLLGTGKNKITWASLASXIIVAQLGARASAMWTLQTAQLKELTDASMLDLFYD 470

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+I+V+  MEI GI +D   L     ++   + +LE++IY L+ EKFN+SS KQLG 
Sbjct: 471 IEMPLIEVLFDMEIAGITVDAAFLTAFGKKLDALIATLEQDIYSLADEKFNISSSKQLGL 530

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL  P+G KTKTG + T A  L+++      I+  +LE+RQ  K+ STY   L   
Sbjct: 531 ILFDKLGIPAGKKTKTG-YSTAANILDKLK-DKYVIVAKVLEYRQYKKLHSTYVVGLLKL 588

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750
           ++K   ++H+ ++   T TGR++S EPNLQNIPI+  LG++IRRAFI S      + ADY
Sbjct: 589 LDKN-NKLHSTFNQTVTATGRISSAEPNLQNIPIRLALGKEIRRAFIPSNDDYVFLDADY 647

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELR+LA ++    + + F   +DIH   A+E+FGV  + V+   R  AK +NF ++Y
Sbjct: 648 SQIELRVLASLSADANMQRAFLEGIDIHTSTASEVFGV--DTVTQAQRNAAKAVNFGVVY 705

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS F LA  +++   EA +YI+ YF ++P +  Y++      +  GY  T+  R+ +  
Sbjct: 706 GISAFSLADDIQVSNQEATEYIENYFAKYPNVKHYLDSLITTSQATGYGVTLLNRKRNIV 765

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           E+ S   + +   +R A+N PIQG+AADI ++AMI VH +L+  +  + ++L +HDEL+ 
Sbjct: 766 ELFSSNFNTKEYGKRIAMNMPIQGTAADIIKKAMIQVHNALKGTR--STLILTVHDELLL 823

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EV + EI   ++++   ME A    + L VPL V++K   +W
Sbjct: 824 EVHKSEIEHITKLLKTEMESA----VKLAVPLLVDVKSGXSW 861



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 162/289 (56%), Gaps = 15/289 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDG S  YRAFY  PLLS K +G+  NAI GF  +L+ LL   + +++A    V FD
Sbjct: 3   IMLVDGFSIAYRAFYGMPLLSTK-EGIFTNAIYGFLKILFNLLDTHQPDALA----VAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           + A TFR++    YKA R  +P  L PQ+PL++    A GI  I   GFEADDI+ T   
Sbjct: 58  FAAPTFRHQYALTYKATRKPMPSELQPQIPLLQDLLSAMGISHISAPGFEADDILGTLAT 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLY-DTVKEEKIDIEH-----VIKKWGIPPEKMV 180
            A      V I+S D+DL+Q+ + +  +     K+   +IE      V+ K+G+ P +++
Sbjct: 118 AAAAAKHDVLIVSGDRDLLQIATDSIQIXIPKTKQTGTEIESYYAADVVAKYGVIPTELI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GD+ DNIPG+ G+G KTA  L+ EY N++ +  N   IK  K +EN+  Y ++A
Sbjct: 178 DVKALMGDASDNIPGVKGVGEKTALKLIAEYKNIDTLYANLENIKGAKLKENLATYKDSA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLI--LEDCNGPRLISFLKALEFTKLINR 287
             S+ L  ++ D+PI   L+     LED    R     + LEF  L+ +
Sbjct: 238 YDSKFLATIKIDIPINFTLQDFSFKLEDNLAVR--ELFEKLEFKSLLTK 284


>gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
 gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
          Length = 873

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 172/417 (41%), Positives = 258/417 (61%), Gaps = 18/417 (4%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +L +  LLH    +++P+  ++++ME  GI +D   L++   E++  L  LE+ IY  +G
Sbjct: 463 ELGLSALLH---EMEEPLSPILAEMEKQGIAVDVQRLQEFGRELTVELQRLEQEIYADAG 519

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E FN++SP+QLG ILF KL  P   KTKTG + T A  LE++    + I++ +L++RQLS
Sbjct: 520 ETFNINSPQQLGHILFEKLGLPPMKKTKTG-YSTDADTLEELR-DQHSIVERVLDYRQLS 577

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+ STY + L   I++   RVHT +    T TGRL+S EPNLQNIPI+ +LG+ +R+ F 
Sbjct: 578 KLMSTYVNGLLAQIHE--GRVHTTFQQTVTATGRLSSTEPNLQNIPIRLELGRLLRKVFT 635

Query: 739 SPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
             PT++   L+SADYSQIELRILAH ++   L + F  + D+H   A+E+FG+ + +V+ 
Sbjct: 636 --PTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTK 693

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            MRR AK +NF +IYG++ F L   L +PR EA  YI+ YFHR+ G+  Y+E+     ++
Sbjct: 694 DMRRKAKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGVKRYLEEIVVKAKE 753

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            G V T+  R     E+  P    R   ER A+N PIQG+AADI + AM+ V ++L+ ++
Sbjct: 754 EGQVRTLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYR 813

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
               +LLQ+HDELV EV  E++   ++++   ME A      L VPL  + K   NW
Sbjct: 814 --ANLLLQVHDELVIEVAPEDLEEVAKVVREEMESA----FPLSVPLIADCKTGPNW 864



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 9/263 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + ++DG+S   R FYA P+++   DG P N + GF  ML +LL   + +    ++ V 
Sbjct: 2   SKILILDGNSLANRTFYALPMMTTA-DGKPTNVLHGFMTMLLRLLLEQKPD----YWVVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    T R E Y DYKA R + P+ L PQ   ++    AF +P +E  G+EADDIIAT 
Sbjct: 57  FDKTKATVRIEQYADYKAQRKETPDALKPQFDFLKELLTAFAMPILECPGYEADDIIATV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T +AE+  +   I + D+D +QL+SP T +Y T K     +  D   + +K+ + P +++
Sbjct: 117 TSLAEQREWETQIYTGDRDALQLISPRTTVYLTRKGITEVDAYDEGALYEKYQLRPAQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPG+PG+G KTA  LL EYG++EN+L N  +I  KK +EN+    + A
Sbjct: 177 DLKGLMGDASDNIPGVPGVGEKTALKLLWEYGSVENVLDNIDKISGKKLQENLRNNTDKA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLI 263
            LS+KL  +  D+P+ I L+ L+
Sbjct: 237 LLSKKLATMLYDIPLEIDLDRLV 259


>gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51]
 gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 873

 Score =  314 bits (804), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 172/417 (41%), Positives = 258/417 (61%), Gaps = 18/417 (4%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +L +  LLH    +++P+  ++++ME  GI +D   L++   E++  L  LE+ IY  +G
Sbjct: 463 ELGLSALLH---EMEEPLSPILAEMEKQGIAVDVQRLQEFGRELTVELQRLEQEIYADAG 519

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E FN++SP+QLG ILF KL  P   KTKTG + T A  LE++    + I++ +L++RQLS
Sbjct: 520 ETFNINSPQQLGHILFEKLGLPPMKKTKTG-YSTDADTLEELR-DQHSIVERVLDYRQLS 577

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+ STY + L   I++   RVHT +    T TGRL+S EPNLQNIPI+ +LG+ +R+ F 
Sbjct: 578 KLMSTYVNGLLAQIHE--GRVHTTFQQTVTATGRLSSTEPNLQNIPIRLELGRLLRKVFT 635

Query: 739 SPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
             PT++   L+SADYSQIELRILAH ++   L + F  + D+H   A+E+FG+ + +V+ 
Sbjct: 636 --PTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTK 693

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            MRR AK +NF +IYG++ F L   L +PR EA  YI+ YFHR+ G+  Y+E+     ++
Sbjct: 694 DMRRKAKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGVKRYLEEIVVKAKE 753

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            G V T+  R     E+  P    R   ER A+N PIQG+AADI + AM+ V ++L+ ++
Sbjct: 754 EGQVRTLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYR 813

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
               +LLQ+HDELV EV  E++   ++++   ME A      L VPL  + K   NW
Sbjct: 814 --ANLLLQVHDELVIEVAPEDLEEVAKVVREEMESA----FPLSVPLIADCKTGPNW 864



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/263 (39%), Positives = 158/263 (60%), Gaps = 9/263 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + ++DG+S   RAFYA P+++   DG P N + GF  ML +LL   + +    ++ V 
Sbjct: 2   SKILILDGNSLANRAFYALPMMTTA-DGKPTNVLHGFMTMLLRLLLEQKPD----YWVVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    T R E Y DYKA R + P+ L PQ   ++    AF +P +E  G+EADDIIAT 
Sbjct: 57  FDKTKATVRIEQYADYKAQRKETPDALKPQFDFLKELLTAFAMPILECPGYEADDIIATV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T +AE+  +   I + D+D +QL+SP T +Y T K     +  D   + +K+ + P +++
Sbjct: 117 TSLAEQREWETQIYTGDRDALQLISPRTTVYLTRKGITEVDAYDEGALYEKYQLRPAQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPG+PG+G KTA  LL EYG++EN+L N  +I  KK +EN+    + A
Sbjct: 177 DLKGLMGDASDNIPGVPGVGEKTALKLLWEYGSVENVLDNIDKISGKKLQENLRNNTDKA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLI 263
            LS+KL  +  D+P+ I L+ L+
Sbjct: 237 LLSKKLATMLYDIPLEIDLDRLV 259


>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
 gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
          Length = 922

 Score =  313 bits (802), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 171/485 (35%), Positives = 271/485 (55%), Gaps = 24/485 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L +Y+L+   S +    +A +W +  + E     + ++ +           A+E+  
Sbjct: 458 DLGLAAYLLNPEESDYGWPRLAARWGAALKPEGGGPARLALAM---------AEALED-- 506

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
                      +L+ + L  +Y  L+ P+  V+++ME  G+ ID    +   +++   L 
Sbjct: 507 -----------RLVRDGLRELYNTLELPLTPVLAEMEGRGVAIDAAAFQAFLSDVQHELD 555

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            L   +Y  +G  FN+ S +QLGD+LF  L  PS  KTK GQ  T+ Q LE++  G + +
Sbjct: 556 RLTAEVYAAAGTTFNIRSAQQLGDVLFKTLNLPSPRKTKGGQASTSQQTLEKL-AGRHAV 614

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           + +IL++R+L K++STY D LP  ++ +  R+HT ++  +T TGRL+S  PNLQNIP++ 
Sbjct: 615 VDSILQFRKLEKMRSTYLDPLPRLVDGQG-RIHTTFNQKATATGRLSSSNPNLQNIPVRG 673

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            LG+++R  FI+ P + L+SADYSQ+ELR+LAH+++   L   F    DIH   AA I+ 
Sbjct: 674 PLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQGEDIHARTAALIYD 733

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           +   +VSP  RR+AKTINF +IYG+   +L  +L+I  +EA ++I RYF R  G+  + E
Sbjct: 734 LQAGEVSPDQRRNAKTINFGLIYGMGAQKLGQELKISTAEAKEFITRYFERLTGLKAFYE 793

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             +   ++ GYV T+ GRR    +I S       +  R AIN  IQGSAADI + AM++V
Sbjct: 794 NVEATAKRQGYVTTLGGRRRLLPDILSANGQAFALARRQAINTVIQGSAADIIKLAMLAV 853

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
               E  ++  ++LLQ+HDEL+ E PE     A   +   M         L VPL V+  
Sbjct: 854 AHDAELRRMDARLLLQVHDELLLETPEATAEAAGARVAALMSSVAPGGETLSVPLVVDWG 913

Query: 968 VSNNW 972
           V ++W
Sbjct: 914 VGHDW 918



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 152/291 (52%), Gaps = 19/291 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +FL+DGS+FIYR F+A   + R  DG P NA+     +L ++L+  R      HF  + D
Sbjct: 14  IFLMDGSAFIYRGFFANKNMQRS-DGFPTNALVVVTRVLLRILREERPR----HFVFVKD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                FR++I+P YKANR  +PE L  Q+ P++R+   A G+     +G EADD IA+  
Sbjct: 69  GKGKNFRHDIFPLYKANRDAMPEDLARQIEPILRM-VHALGLKLEVSEGCEADDCIASLA 127

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDIEHVIK-KWGIPPEKMVCLQ 183
                E   V I+S DKDL Q + P   ++D   +EEK+  E   + + G+ P +   +Q
Sbjct: 128 ARFSSE-RPVVIVSGDKDLKQCLGPNVYMWDPAAREEKLLNEAEFRAESGVSPAQWPDVQ 186

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI----LINASRIKQKKRRENILEYAET 239
           AL GD+ DNIPG+PGIG KTA  + +   +LE+I    ++   +I+ K R      + E 
Sbjct: 187 ALVGDASDNIPGVPGIGPKTARQIFEICPSLEDIRDHFVLLPPKIQDKMR-----GHLED 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
             + R+L  L      ++ L+ + +   N P   +  +  E   L   +A+
Sbjct: 242 MFIWRELTTLSLKACESLTLDDMAVRPLNVPECRALAEEFELFALRREMAS 292


>gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium]
          Length = 647

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 218/697 (31%), Positives = 364/697 (52%), Gaps = 59/697 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             LVDGS F++RAF+A P L+    GL  NAI G  + + KL++  +     +H AVIFD
Sbjct: 4   FVLVDGSYFLFRAFHALPPLTTS-TGLQTNAIRGAISAIQKLMRRVQ----PTHMAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+ + P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T   
Sbjct: 59  TPEPTFRHVLSPIYKGDRPSMPEELSQQIPYLHALIRALGIPLHTLPGAEADDIIGTLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK G  V I + DKD+ QLV+    L D+ K++ +D++ VI+K+G+ P++++    L 
Sbjct: 119 RAEKAGHQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDVDGVIEKFGVRPDQIIDYLTLM 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ D I G+PG+G KTAA LL EYG +  IL N   IK  K  +++ +  E   L  +L
Sbjct: 179 GDASDGIRGVPGVGAKTAAKLLNEYGTIAGILENVDNIK-GKVGQSLKDNVEGIALDHQL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  D+ +++  + L L + +   L +    LEF   +  +    + ++   +     I
Sbjct: 238 ASIVIDLDLSLSYDDLKLCEPDVEALRNLYTELEFRNQLQSLDHPNNPNSPTYKQTTQSI 297

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQT-SKINSEQTPQKLFLERLQKLSQYPINN 365
           + TE     +E+EI  D    +S    L + T   + S++   KLF +RL    ++ I+ 
Sbjct: 298 SKTEQ---PVESEI-TDQATSSSVDDRLGEATYHTVLSQEAWDKLF-QRLSTEKRFAIDT 352

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           +       T  +   + ++       F +  D  DA++  P+A          D     E
Sbjct: 353 E-------TTSLDYRIAEM-----VGFSVAFDANDAYYI-PLA---------HDYEGAPE 390

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
            +  D                  I+  +K   E+    KIGH++KYD  +   +GI ++G
Sbjct: 391 QLNRD-----------------AIIQQIKPILEDPSVEKIGHHLKYDAHIFENHGIHLQG 433

Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
            + D ML SYVL++  + H +  +A+ +LS+   T +++          ++I       +
Sbjct: 434 WYFDTMLASYVLNAVTTRHGMDDVARVYLSHLTTTFEQVAGKGAKQKTFNQIEIETAGHY 493

Query: 542 AIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E+++V  +L+ +L  KL  + +L+++   ++ P+  V++ ME  GI++D   L Q+S 
Sbjct: 494 AAEDAHVTYRLYEVLERKLKEIPELINILHHIEMPVASVLATMEENGIELDLSFLDQLSV 553

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           + +  + +LE  I +++GE FN+ SPKQ+G++LF KL    G KT TGQ+ T+   LE+I
Sbjct: 554 DFANTIQNLENQIIEIAGESFNVGSPKQVGEVLFEKLGLKGGKKTATGQYSTSEAVLEKI 613

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
              D+PI + I+E+R L+K++STY ++L    N  T 
Sbjct: 614 ---DHPITELIIEYRGLTKLRSTYTEALVKQANPDTH 647


>gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
 gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
          Length = 890

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 250/408 (61%), Gaps = 10/408 (2%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           LLH    ++ P+ +V++ ME  G Q+D   ++     +   +  + + IY  +GE+FN++
Sbjct: 488 LLH---DIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYAGEEFNIN 544

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S ++LG ILF KL  P+G KTKTG + T    LE++    +PI   +LE+R+L+K+ STY
Sbjct: 545 STRELGAILFDKLGLPTGKKTKTG-YSTNVDVLEKL-IPKHPIAGLVLEYRKLTKLSSTY 602

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
              L   +    QRVH+ +    T TGR++S EPN+QNIPI+T+LG ++R+ F++ P   
Sbjct: 603 VTGLLK-VTGPDQRVHSVFRQTETRTGRISSTEPNMQNIPIRTELGSQMRKFFVAKPGCV 661

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+ ADYSQIELRILAHI+  + +   F    DIH   A+++FGV  E +  ++RR AK I
Sbjct: 662 LLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQVFGVPAEVLPAELRRRAKAI 721

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGI  + L+  + +  +EA +YI+ Y H + G+ +Y+        ++GYV+T+FG
Sbjct: 722 NFGIVYGIGAYSLSQDINVSVAEAKEYIENYLHTYSGVRQYMNDIVESSAKSGYVKTMFG 781

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           R  H  EI S   + +   ER A+N PIQG+AADI + AM+ V++ L++  L+ +++LQ+
Sbjct: 782 RVRHLPEITSSNHNTKAFGERVALNTPIQGTAADIIKIAMVKVYRRLKEEGLSAQLILQV 841

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDEL+ EV + +   A  I+   ME A     +L VPL V++    NW
Sbjct: 842 HDELLIEVSKADAPRAKVILKEEMEHAA----DLSVPLSVDVSEGENW 885



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 156/287 (54%), Gaps = 12/287 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +  VDG+S + R++Y    LS    G+P NA+ GF N++ K+++    + +A    V FD
Sbjct: 43  VLAVDGNSILNRSYYGVRNLSNSK-GVPTNAVFGFFNVMDKMIKEVEPDCVA----VAFD 97

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y  YKA R  +PE L  QLP+ +   Q FG   +E +GFEADDI+ T+  
Sbjct: 98  LSAPTFRHKQYDGYKAGRKGMPEELAVQLPITKELIQLFGYHIVECEGFEADDIMGTFAR 157

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI--DIEHVIKKWGIPPEKMVCLQA 184
           +  ++     I + D+D +QLV     +     +E I  D + +++++G+ P +++ ++A
Sbjct: 158 LCREQKAECVIATGDRDNLQLVGDGVTVRLATNKEAILFDTDKIVQEYGVTPPELIEVKA 217

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR--- 241
           L GDS DNIPG+ GIG KTA  L+ +Y ++  IL +A  +    R +N+L  AE AR   
Sbjct: 218 LMGDSSDNIPGVKGIGEKTALSLVSKYHSVSYILDHAQELDATTRVKNLLS-AEGARELA 276

Query: 242 -LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +SR L  +  + PI   L H  +   +   L      LE  K + R
Sbjct: 277 EMSRMLGTIVDNAPIDGDLSHYAVGPRDDAGLYRIFSELELKKFLER 323


>gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612]
          Length = 421

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 181/429 (42%), Positives = 265/429 (61%), Gaps = 32/429 (7%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +YE ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+LS E FNLSSPK
Sbjct: 1   MYEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELSEENFNLSSPK 60

Query: 628 QLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           QLG+ILF KL        KTKTG W T A  LE++   ++ II+++++ R L+K+ STY 
Sbjct: 61  QLGEILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQHLIKHRTLTKLLSTYI 118

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D+LPN IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL
Sbjct: 119 DALPNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKL 178

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           +SADYSQIELRILAH+A    L   F  + DIH + A  IF    E +S   RR  KTIN
Sbjct: 179 LSADYSQIELRILAHLADEEILINAFHKNDDIHSLTAKLIF--EKEVISSDERRVGKTIN 236

Query: 806 FSIIY--GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           F +IY  GI  F  +T + IP  EA +++ +Y  R+  I +++E  +      GYV+TIF
Sbjct: 237 FGVIYGMGIKKFARSTGVSIP--EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIF 294

Query: 864 GRRIHY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           GR+  +                  D  ++ ++ +   + RAA NAPIQGS+ADI + AM+
Sbjct: 295 GRKREFKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMV 354

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            ++K   +  +  KMLLQ+HDEL+FEV  + +   ++++  +ME  C   + L VPL V+
Sbjct: 355 QLNKKFIEMNVPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMED-C---VKLNVPLLVD 410

Query: 966 IKVSNNWQE 974
           I + +NW E
Sbjct: 411 IGIGDNWME 419


>gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 882

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 315/555 (56%), Gaps = 38/555 (6%)

Query: 428 FIDLSVHTSQDSTGKNTLTKE--ILSYLK----KFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F+D + H  Q   G+ +  +E  ++ +L+    K+F         H  K    +L   GI
Sbjct: 351 FVDRNHHGLQVELGELSADEEKVLVQWLESPAPKYF---------HAAKAAFHMLAGRGI 401

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L +Y+L  G+ +++++ + Q+ L        KS  ++     + DS    
Sbjct: 402 ELDGLAHDTALAAYILRPGQRTYELSDVYQRHLQ-------KSLGAATEQMSLLDSS--- 451

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             ++ +  I++L   L  +L       +Y  L+ P++ ++++ME TGI +D D+L+    
Sbjct: 452 SLVDQAAAIMELAEKLTAELQDIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKD 511

Query: 601 EISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              + +   E +  +L+G EK NL+SPKQL  +LF     P   KTKTG + T A+++EQ
Sbjct: 512 AFVEQVAEQERSARELAGDEKLNLNSPKQLQKVLFETFDMPKTKKTKTG-YSTAAKEIEQ 570

Query: 660 INCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +P + ++L  R+  K+K+T  + L   +     R+HT ++   T TGRL+S EP
Sbjct: 571 LAIKHPHPFLDHLLAHREYQKMKTTL-EGLIKTVQP-DGRIHTTFNQTVTSTGRLSSTEP 628

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++T+ G++IR AFI     ++L++ADYSQIE+R++AH++    L + ++   D+
Sbjct: 629 NLQNIPVRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDL 688

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++ YF 
Sbjct: 689 HNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIMESYFE 748

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF G+ +Y++      R++GY  T+FGRR +  E+NS     R   ERAA+NAPIQG+AA
Sbjct: 749 RFGGVKKYLDDVVEQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQGTAA 808

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V ++L D K  +++LLQ+HDELV EV   E     +I+   M+ A    I 
Sbjct: 809 DIIKVAMIRVDRALRDMK--SRVLLQVHDELVVEVAPGEADQVREILEREMDSA----IE 862

Query: 958 LRVPLKVNIKVSNNW 972
           L VPL+V+     +W
Sbjct: 863 LNVPLEVSAGAGTDW 877



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 13/305 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P+ +     G   NA+ GF +ML  ++   R ++IA    V F
Sbjct: 11  LLLIDGHSMAFRAFYALPVENFSTSGGQHTNAVYGFLSMLSNIVSEERPDAIA----VAF 66

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E++PDYKA R   PE    Q+ ++R   +  GI  +  + +EADDI+AT  
Sbjct: 67  DVGRKTFRTEMFPDYKAQREAAPEEFKGQVDIIRDTLETLGITTLSRENYEADDILATLA 126

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+   +   I++ D+D +QLV+ +T +   +K      +   E V  K+G+ P +   
Sbjct: 127 TQAQD--YETLIVTGDRDYLQLVTDSTTVLYPMKGVSTLHRFTPEAVEDKYGLTPAQYPD 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIP +G KTA   + +YG+L +++ +A  I       N  E  E  +
Sbjct: 185 FAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEINGVVGN-NFRERIEQVQ 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANIE 300
           ++RKL  + TD+ + +  + L   +     + +    LEF T L +RV      D A   
Sbjct: 244 MNRKLTQMITDMDLDVGPDDLAFREVKVADVAAKFDELEFGTNLRDRVLAAIPNDGAEAA 303

Query: 301 PVVLD 305
             V D
Sbjct: 304 EQVAD 308


>gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX]
 gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX]
          Length = 929

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 294/529 (55%), Gaps = 11/529 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           + L  +  +  + K+ H +K+    L   G ++ G E D  + +Y+L+ GR + ++A++ 
Sbjct: 404 AALTAWLADPAYPKVLHGVKWALRALWARGWTLDGVESDTAIAAYLLEPGRRNFELATLC 463

Query: 510 QKWLSYTRKEI-LKSRKSSIPIDKISDSQ--VQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            ++L     E   +  + ++ ++   D Q   +      +   ++L L L  +L   + L
Sbjct: 464 LRYLGRELTEHNAEGAQLTLDLEGTGDDQDTARRELALRALATVELALALDAELTRREGL 523

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +   L+ P+ +V+++ME  GI  D   L+ + AE +  +    +  + L G +FNL SP
Sbjct: 524 DLLHNLELPLAEVLARMEDAGIAADLTYLRDLEAEFAAAVRQAVDEAHRLVGREFNLGSP 583

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQL  ILF +L  P   + KTG               DN +   +L  R  +K+++T  +
Sbjct: 584 KQLQQILFDELGLPKTKRIKTGYTTDADALAWLAAQTDNELPVILLRHRDQTKLRTT-VE 642

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            L   I +   R+HT +    T TGRL+S EPNLQNIP++TD G++IRRAF+     ++L
Sbjct: 643 GLIKTIAE-DGRIHTTFHQTVTATGRLSSAEPNLQNIPVRTDAGRRIRRAFVVGEGYEQL 701

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ++ADYSQIELRI+AH+++   L + F +  D H  +A+ +F + +++V  + R   K +N
Sbjct: 702 LTADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKAMN 761

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           + + YG+S + LA QL I   EA   ++ YF  F  + +Y+E      R+ GY  TI GR
Sbjct: 762 YGLAYGLSDYGLAQQLGISPKEARVLMEEYFSHFGKVRDYLEAVVVRARREGYTATILGR 821

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  ++NS     R + ER A+NAPIQGSAADI + AM+ V ++L ++ LA++MLLQ+H
Sbjct: 822 RRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKLAMLRVDRALRENGLASRMLLQVH 881

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DELV EV   E+ T  +++V  M +A      LRVPL V++ V  NW +
Sbjct: 882 DELVLEVAPGELDTVRELVVEHMSQAQ----QLRVPLAVSVGVGPNWHD 926



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/322 (34%), Positives = 167/322 (51%), Gaps = 26/322 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG S  +RAFYA P     +  G   NAI GF +ML KLL    +E   +H AV +
Sbjct: 35  LLLVDGHSMAFRAFYALPAEKFVNSAGQATNAIYGFTSMLVKLL----REEQPTHIAVAW 90

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y +YKA R + P     Q+ L++      G+ ++ + G+EADDIIAT T
Sbjct: 91  DRSEPTFRHEEYAEYKAGRSETPPEFPSQVGLLQELLGLIGVTSLSVPGYEADDIIATLT 150

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
                EG  V I S D+D  QLV        P   L D +   ++  E V  K+ +PPE+
Sbjct: 151 TRGLAEGMDVLIASGDRDTFQLVGEHCTVLYPGRSLSDLI---RMTPEAVEAKYAVPPER 207

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G+  DN+PG+PG+G KTAA  L +YG+L+ ++ +A  I  K   +N+ ++ +
Sbjct: 208 YCDLAALVGEKSDNLPGVPGVGPKTAAKWLAKYGSLDALVAHAHEIGGKA-GQNLRDHLD 266

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
               +++L  L TDV + + +  + L   N   +      LEF + L +R+       A 
Sbjct: 267 DVLRNQRLNRLATDVELGVDVTGMTLGHWNRDGVNLLFDNLEFASTLRDRLFAVLSEQAG 326

Query: 298 N--IEPVVLDINTTENKGIAIE 317
           +   EPV       +++G ++E
Sbjct: 327 DDSAEPV-------QDEGFSVE 341


>gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3]
          Length = 857

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 247/408 (60%), Gaps = 9/408 (2%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSP 626
           +Y  ++ P+  V++ M  TG+ +D+D ++Q   ++ + L  +   I+  +G   FN +SP
Sbjct: 456 LYNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREELEQVLTRIHMETGSATFNPNSP 515

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG++LF  +  P G KT+ G W T A+ LE +   + P+++++L++R   K+ STY +
Sbjct: 516 KQLGEMLFDTMGLPHGKKTQRG-WSTDAETLESLR--EYPLVEDVLQYRAYQKLNSTYVE 572

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L   I +   R+H+ ++     TGRL+S  PNLQNIPI+T+LG ++R  F++ P   L+
Sbjct: 573 GLLKVIGE-DGRIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVAKPGCVLV 631

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            ADYSQIELRILAHI     + Q F N  DIHR  AA+I+G+   +V+P++R  AK INF
Sbjct: 632 DADYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINF 691

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YG   + L+  + +   EA  ++K Y   FP +  Y++KT    + NGYV T+FGRR
Sbjct: 692 GIMYGKGAYSLSKDIGVTVKEADAFLKNYLAAFPNVSGYMDKTIADAKANGYVSTLFGRR 751

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
               E+ S   ++R   ER A N PIQG+AAD+ + AM+ V K L D K+A++++L +HD
Sbjct: 752 RTLPELASTNFNVRASGERMARNTPIQGTAADVIKLAMVRVWKRLRDEKMASRLILTVHD 811

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+ E PE E   A++I+   ME  C   +   VPL  ++    NW E
Sbjct: 812 ELIVEAPEVEAEQAARILREEME-GC---VQYAVPLSTDVHAGKNWLE 855



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 160/291 (54%), Gaps = 14/291 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S   RAFY   LL+ K DG   NAI GF N+L  LL    KE      AV FD
Sbjct: 3   LLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIYGFLNILLSLL----KECQPDEVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y  YKA R  +PE L  Q+P+++      G   +  +G+EADDI+ T   
Sbjct: 58  LKAPTFRHKMYDGYKATRHAMPEELAQQMPVLKQLLADLGYRTVTAEGWEADDILGTLAA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTC--LYDTV----KEEKIDIEHVIKKWGIPPEKMV 180
                     + + D+D +QLVS +T   L  TV    K   +D + + +K+G+ P++++
Sbjct: 118 ACASRKDDCFLATGDRDSLQLVSESTTVLLAATVMGRSKTVVMDEDAIQEKYGLAPKQLI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAE 238
            +++L GD+ DNIPG+ GIG KTA  L+Q +G+LE +   I+  RIK  K+RE++LE   
Sbjct: 178 EVKSLMGDTSDNIPGVKGIGEKTALSLVQTFGSLEGVYQNIDDKRIK-PKQREHLLEDKP 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            A LS  L  +RTD PI        + + N P  +  L+ LE   LI R  
Sbjct: 237 MAELSHTLGTIRTDAPIDTAEGSYTVGEGNKPAAVRLLQELEIHSLIPRFG 287


>gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3]
          Length = 829

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 155/398 (38%), Positives = 244/398 (61%), Gaps = 7/398 (1%)

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+  V+  ME  G+ ID D +K    E+ +    +   IY+ +G +FN+ SPKQLG +LF
Sbjct: 435 PLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEFNIGSPKQLGSVLF 494

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            KL  PS  KTKTG + T A  LE +    +PI+  I E+R L+K+++TY   L   + +
Sbjct: 495 EKLALPSAKKTKTG-YSTNADVLESL-MDKHPIVPLITEYRALTKLQNTYVTGLLKVVGE 552

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
              R+H+ +    T TGR++S EPN+QNIP++T LG+++RR F +     L+ ADYSQIE
Sbjct: 553 -DGRIHSTFKQTETRTGRISSAEPNIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIE 611

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LAHI+    + + F + +DIH + A+++F   IE V+P +R  AK +NF I+YGI  
Sbjct: 612 LRVLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA 671

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F L+  + +   +A++YI+ Y  ++ GI  Y+E+T    +++GYVET+FGRR +  E+ +
Sbjct: 672 FSLSKDIGVSVPKASEYIRSYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRRYIKELAA 731

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
              +++   ER A N PIQG+AADI + AMI V+  LE+  L  +++LQ+HDEL+ E  E
Sbjct: 732 KNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLEESGLDARLILQVHDELIVEAKE 791

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +     + ++   ME A    + L VP+ V++ +   W
Sbjct: 792 DCAEKVALLLKEEMENA----VKLTVPMTVDVNIGKTW 825



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/289 (35%), Positives = 162/289 (56%), Gaps = 16/289 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DG+S + RAFY   +L+    G+  NA+ GF N L  L ++   + IA    V FD
Sbjct: 3   FLIIDGNSILNRAFYGIRVLTNSR-GVATNAVTGFMNTLLMLEKDVDPDMIA----VAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y  YKANR  +PE L  QLP ++    A GI  IE +GFEADDII T + 
Sbjct: 58  LKAPTFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDIEH----VIKKWGIPPEKMV 180
               +    T+ + D+D  QLV+     Y TV+  + K DI +    +++++G+ P++M+
Sbjct: 118 ACADKKIPCTVSTGDRDSFQLVND----YVTVRLAKTKGDIYYTPDVIMEEYGVTPKQMI 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN-ASRIKQKKRRENILEYAET 239
            ++AL GDS DNIPG+PGIG KTA  L++E+ +++ +  N  S +  K  R  +    E+
Sbjct: 174 EVKALMGDSSDNIPGVPGIGEKTALSLIKEFASVDGVYENIGSTLITKGVRTKLENGKES 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             +SR+L  +    PI   L H + ++ +   L   L  LE  K++ ++
Sbjct: 234 CYMSRQLAEICLTAPIDTELSHYVPKERDDTELARLLSELEMYKMLQKL 282


>gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a]
          Length = 829

 Score =  310 bits (795), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 155/398 (38%), Positives = 244/398 (61%), Gaps = 7/398 (1%)

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+  V+  ME  G+ ID D +K    E+ +    +   IY+ +G +FN+ SPKQLG +LF
Sbjct: 435 PLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEFNIGSPKQLGSVLF 494

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            KL  PS  KTKTG + T A  LE +    +PI+  I E+R L+K+++TY   L   + +
Sbjct: 495 EKLALPSAKKTKTG-YSTNADVLESL-MDKHPIVPLITEYRALTKLQNTYVTGLLKVVGE 552

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
              R+H+ +    T TGR++S EPN+QNIP++T LG+++RR F +     L+ ADYSQIE
Sbjct: 553 -DGRIHSTFKQTETRTGRISSAEPNIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIE 611

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LAHI+    + + F + +DIH + A+++F   IE V+P +R  AK +NF I+YGI  
Sbjct: 612 LRVLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA 671

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F L+  + +   +A++YI+ Y  ++ GI +Y+E T    +++GYVET+FGRR +  E+ +
Sbjct: 672 FSLSKDIGVSVPKASEYIRSYLSKYSGIAQYMELTVAKAKRDGYVETMFGRRRYIKELAA 731

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
              +++   ER A N PIQG+AADI + AMI V+  L+D  L  +++LQ+HDEL+ E  E
Sbjct: 732 KNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKDSGLDARLILQVHDELIVEAKE 791

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +     + ++   ME A    + L VP+ V++ +   W
Sbjct: 792 DCAEKVALLLKEEMENA----VKLTVPMTVDVNIGKTW 825



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 16/289 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DG+S + RAFY   +L+    G+  NA+ GF N L  L ++   + IA    V FD
Sbjct: 3   FLIIDGNSILNRAFYGIRVLTNSR-GVATNAVTGFMNTLLMLEKDVNPDMIA----VAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y  YKANR  +PE L  QLP ++    A GI  IE +GFEADDII T + 
Sbjct: 58  LKAPTFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDIEH----VIKKWGIPPEKMV 180
               +    T+ + D+D  QLV+     Y TV+  + K DI +    +++++G+ P++M+
Sbjct: 118 ACADKKIPCTVSTGDRDSFQLVND----YVTVRLAKTKGDIYYTPDVIMEEYGVTPKQMI 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN-ASRIKQKKRRENILEYAET 239
            ++AL GDS DNIPG+ GIG KTA  L++E+ +++ +  N  S +  K  R  +    E+
Sbjct: 174 EVKALMGDSSDNIPGVAGIGEKTALSLIKEFASVDGVYENIGSTLITKGVRTKLENGKES 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             +SR+L  +    PI   L H + ++ +   L   L  LE  K++ ++
Sbjct: 234 CYMSRQLAKICLTAPIDTELSHYVPKERDDTELAKLLSELEMYKMLQKL 282


>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN]
 gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923]
 gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I
 gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
 gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
 gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923]
          Length = 911

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 183/514 (35%), Positives = 297/514 (57%), Gaps = 24/514 (4%)

Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRK 525
           KL +H   ++ RG+       D  L +Y++  G+ S  +  ++ ++L    R E  +  +
Sbjct: 403 KLAMHD--LAGRGWTLGGITSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQEQ 460

Query: 526 SSI--PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            S+   +D++ D Q  +  I  +  ++ L   L  +L +     +   ++ P+  V++ M
Sbjct: 461 FSLLDNVDEV-DKQAIQTLILRARAVVDLAAALDAELDLIDSTSLLGEMELPVQQVLADM 519

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  GI  D  LL ++ ++    +    E  Y + G++ NLSSPKQL  +LF +L  P   
Sbjct: 520 EKAGIAADLRLLTELQSQFGDQIRDAAEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTK 579

Query: 644 KTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +TKTG + T A  L+ + C  ++P ++++L  R ++++K T  D L N +     R+HT 
Sbjct: 580 RTKTG-YTTDADALQSLFCKTEHPFLQHLLTHRDVTRLKVT-VDGLLNAVAA-DGRIHTT 636

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK----KLISADYSQIELRIL 758
           ++     TGRL+S EPNLQNIPI+T+ G++IR AF+         +L++ADYSQIE+RI+
Sbjct: 637 FNQTIATTGRLSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIM 696

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+++   L + F    D+H  VA+  FG+ IE ++P++RR  K +++ + YG+S + LA
Sbjct: 697 AHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAYGLA 756

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
           TQL+I   EA   +++YF RF G+ +Y+       R++GY  T+ GRR +  E++S    
Sbjct: 757 TQLKISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQ 816

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           IR   ERAA+NAPIQGSAADI + AMI+V KSL+  KLA++MLLQ+HDEL+FEV   E  
Sbjct: 817 IREAAERAALNAPIQGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELLFEVAIGERE 876

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
               ++   M  A      L VPL+V++    +W
Sbjct: 877 QIEAMVREQMGSA----YPLDVPLEVSVGFGRSW 906



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/294 (38%), Positives = 157/294 (53%), Gaps = 14/294 (4%)

Query: 4   ENH----LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           E+H    L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    +E   
Sbjct: 11  EDHTKPMLMLLDGNSLAFRAFYALPTENFKTRGGLTTNAVYGFTAMLINLL----REEAP 66

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H A  FD    TFR+E Y  YKANR  IP     Q+ + +    A GI      GFEAD
Sbjct: 67  THIAAAFDVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEAD 126

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGI 174
           D+IAT    AE EG+ V +++ D+D +QLVS   T LY    V E  +   E VI+K+G+
Sbjct: 127 DLIATLATQAENEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGV 186

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +   L AL GD  DN+PGIPG+G KTAA  + +YG+L+ ++ N   ++ K       
Sbjct: 187 TPAQYPDLAALRGDPSDNLPGIPGVGEKTAAKWIVDYGSLQGLVDNVESVRGKVGEALRT 246

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             A   R +R+L  L  DVP+    + L L+  +  R+      LEF  L +R+
Sbjct: 247 HLASVVR-NRELTELVKDVPLVQTSDTLRLQPWDRDRIHRLFDNLEFRVLRDRL 299


>gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS]
 gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS]
          Length = 929

 Score =  310 bits (793), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 185/522 (35%), Positives = 301/522 (57%), Gaps = 34/522 (6%)

Query: 473 KLVLHRYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----L 521
           KL +H   ++ RG++      D  L +Y++  G+ S  +  ++   L Y R+E+      
Sbjct: 415 KLAMH--DLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLS---LRYLRRELRADNPA 469

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           + + S +      D Q  +  I  +  +L L   L  +L       +  R++ P+  V++
Sbjct: 470 QQQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSLLGRMELPVQRVLA 529

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME TGI +D D L+Q+ +E +  +    E  Y + G++ NL SPKQL  +LF +L  P 
Sbjct: 530 EMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELAMPK 589

Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             +TKTG + T A  L+ + +   +P ++++L  R  +++K T  D L N +     R+H
Sbjct: 590 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 646

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI---SPPTK-------KLISADY 750
           T ++     TGRL+S EPNLQNIPI+T+ G++IR AF+    PP         +L++ADY
Sbjct: 647 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVESRPPGSGGGAVFTELMTADY 706

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIE+RI+AH+++   L + F    D+H  VA+  F V I++V+P +RR  K +++ + Y
Sbjct: 707 SQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAY 766

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G+S + LA QL+I   EA   + +YF RF GI +Y+    +  R++GY  T+FGRR +  
Sbjct: 767 GLSAYGLAAQLKISTEEAKVQMDQYFARFGGIRDYLRDVVDQARKDGYTSTVFGRRRYLP 826

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           E++S   ++R   ERAA+NAPIQGSAADI + AMI V ++++D  L+++MLLQ+HDEL+F
Sbjct: 827 ELDSSNRNVREAAERAALNAPIQGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLF 886

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EV + E  T  +++   M  A      L VPL+V++    +W
Sbjct: 887 EVADGERDTLEKLVRDKMGSAY----ALDVPLEVSVGYGRSW 924



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 161/305 (52%), Gaps = 20/305 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  YRAFYA P  + K   GL  NA+ GF  ML  LL++ +     SH A  F
Sbjct: 34  LMLLDGNSLAYRAFYALPAENFKTQGGLTTNAVYGFTAMLINLLRDEQP----SHVAAAF 89

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YKA R   P+    Q+ + +    A GI  +   GFEADDIIAT  
Sbjct: 90  DVSRQTFRVDKYPEYKAGRSSTPDEFRGQIDIAKEVLVALGIAVLAEPGFEADDIIATLA 149

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS   T LY         +   + V +K+G+ P++   
Sbjct: 150 TQAEGEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSDLTRFTPDAVQEKYGLTPQQYPD 209

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238
             AL GD  DN+PGIPG+G KTA   + EYG+L+ ++ N  ++K K     R N+     
Sbjct: 210 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQALVDNVDQVKGKVGDALRANLSHVV- 268

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              L+R+L  L  DVP+    + L ++  +  ++      LEF  L +R+  T     A 
Sbjct: 269 ---LNRELTDLVKDVPLPHTPDTLRVQPWDRDQIHRLFDDLEFRVLRDRLFETL----AA 321

Query: 299 IEPVV 303
           +EP V
Sbjct: 322 VEPEV 326


>gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
 gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
          Length = 882

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 297/510 (58%), Gaps = 23/510 (4%)

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H  K    +L   GI + G   D  L +Y+L  G+ +++++ + Q+ L   +K +  + +
Sbjct: 387 HAAKAAFHMLAGRGIELNGLAHDTALAAYILRPGQRTYELSDVYQRHL---QKSLGAASE 443

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
               +D  S        ++ +  I++L   L  +L       +Y  L+ P++ ++++ME 
Sbjct: 444 QMSLLDNSS-------LVDQAAAIMELAEKLTTELQDIDSFELYTDLELPLVTILARMEA 496

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK 644
           TGI +D D+L+       + +   E +  +L+G+ K NL+SPKQL  +LF     P   K
Sbjct: 497 TGIAVDVDILETQKDAFVEQVAEQERSARELAGDDKLNLNSPKQLQKVLFETFDMPKTKK 556

Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           TKTG + T A+++EQ+     +P + ++L  R+  K+K+T  + L   +     R+HT +
Sbjct: 557 TKTG-YSTAAKEIEQLAIKHPHPFLDHLLAHREYQKMKTTL-EGLIKTVQP-DGRIHTTF 613

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762
           +   T TGRL+S EPNLQNIP++T+ G++IR AFI     ++L++ADYSQIE+R++AH++
Sbjct: 614 NQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLS 673

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L + ++   D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL 
Sbjct: 674 ADPGLIEAYKAGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLG 733

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP  EA   ++ YF RF G+ +Y++      R++GY  T+FGRR +  E+NS     R  
Sbjct: 734 IPAGEAKSIMESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRYLPELNSDNRLAREN 793

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ERAA+NAPIQG+AADI + AMI V ++L D K  +++LLQ+HDELV EV   E     +
Sbjct: 794 AERAALNAPIQGTAADIIKVAMIRVDRALRDMK--SRVLLQVHDELVVEVAPGEADQVRE 851

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           I+   M+ A    I L VPL+V+     +W
Sbjct: 852 ILEREMDSA----IELNVPLEVSAGAGTDW 877



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 154/297 (51%), Gaps = 13/297 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P+ +     G   NA+ GF +ML  ++   R ++IA    V F
Sbjct: 11  LLLIDGHSMAFRAFYALPVENFSTSGGQHTNAVYGFLSMLSNIVSEERPDAIA----VAF 66

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E++PDYKA R  +PE    Q+ ++R   +  GI  +  + +EADDI+AT  
Sbjct: 67  DVGRKTFRTEMFPDYKAQREAVPEEFKGQVDIIRDTLETLGITTLSRENYEADDILATLA 126

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+   +   I++ D+D +QLV+ +T +   +K      +   E V  K+G+ P +   
Sbjct: 127 TQAQD--YETLIVTGDRDYLQLVTDSTTVLYPMKGVSTLHRFTPEAVEDKYGLTPVQYPD 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIP +G KTA   + +YG+L  ++ +A  I       N  E  E  +
Sbjct: 185 FAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLATLVDHAEEINGVVGN-NFRERIEQVQ 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
           ++RKL  + TD+ + +  + L   +     + +    LEF T L +RV +    D A
Sbjct: 244 MNRKLTQMITDMDLDVGPDDLAFREAKVADVAAKFDELEFGTNLRDRVLSAIPNDGA 300


>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
          Length = 907

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 183/514 (35%), Positives = 297/514 (57%), Gaps = 24/514 (4%)

Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRK 525
           KL +H   ++ RG+       D  L +Y++  G+ S  +  ++ ++L    R E  +  +
Sbjct: 399 KLAMHD--LAGRGWTLGGITSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQEQ 456

Query: 526 SSI--PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            S+   +D++ D Q  +  I  +  ++ L   L  +L +     +   ++ P+  V++ M
Sbjct: 457 FSLLDNVDEV-DKQAIQTLILRARAVVDLAAALDAELDLIDSTSLLGEMELPVQQVLADM 515

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  GI  D  LL ++ ++    +    E  Y + G++ NLSSPKQL  +LF +L  P   
Sbjct: 516 EKAGIAADLRLLTELQSQFGDQIRDAAEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTK 575

Query: 644 KTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +TKTG + T A  L+ + C  ++P ++++L  R ++++K T  D L N +     R+HT 
Sbjct: 576 RTKTG-YTTDADALQSLFCKTEHPFLQHLLTHRDVTRLKVT-VDGLLNAVAA-DGRIHTT 632

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK----KLISADYSQIELRIL 758
           ++     TGRL+S EPNLQNIPI+T+ G++IR AF+         +L++ADYSQIE+RI+
Sbjct: 633 FNQTIATTGRLSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIM 692

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+++   L + F    D+H  VA+  FG+ IE ++P++RR  K +++ + YG+S + LA
Sbjct: 693 AHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAYGLA 752

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
           TQL+I   EA   +++YF RF G+ +Y+       R++GY  T+ GRR +  E++S    
Sbjct: 753 TQLKISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQ 812

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           IR   ERAA+NAPIQGSAADI + AMI+V KSL+  KLA++MLLQ+HDEL+FEV   E  
Sbjct: 813 IREAAERAALNAPIQGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELLFEVAIGERE 872

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
               ++   M  A      L VPL+V++    +W
Sbjct: 873 QIEAMVREQMGSA----YPLDVPLEVSVGFGRSW 902



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/294 (38%), Positives = 157/294 (53%), Gaps = 14/294 (4%)

Query: 4   ENH----LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           E+H    L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    +E   
Sbjct: 7   EDHTKPMLMLLDGNSLAFRAFYALPTENFKTRGGLTTNAVYGFTAMLINLL----REEAP 62

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H A  FD    TFR+E Y  YKANR  IP     Q+ + +    A GI      GFEAD
Sbjct: 63  THIAAAFDVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEAD 122

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGI 174
           D+IAT    AE EG+ V +++ D+D +QLVS   T LY    V E  +   E VI+K+G+
Sbjct: 123 DLIATLATQAENEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGV 182

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +   L AL GD  DN+PGIPG+G KTAA  + +YG+L+ ++ N   ++ K       
Sbjct: 183 TPAQYPDLAALRGDPSDNLPGIPGVGEKTAAKWIVDYGSLQGLVDNVESVRGKVGEALRT 242

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             A   R +R+L  L  DVP+    + L L+  +  R+      LEF  L +R+
Sbjct: 243 HLASVVR-NRELTELVKDVPLVQTSDTLRLQPWDRDRIHRLFDNLEFRVLRDRL 295


>gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2]
 gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2]
          Length = 942

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 180/490 (36%), Positives = 270/490 (55%), Gaps = 17/490 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +Y+LDS RS  D   IA  +LS +        ++  P D    S         + 
Sbjct: 465 DTTLAAYLLDSARSHFDDGYIADTYLSVSLPP--ARGEAGAPTDAPVASARAAAVARAAR 522

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
             L   L LR         +V+  ++ P++ V+  ME TG+ +D   LK +S  +   + 
Sbjct: 523 EPLARALELR------GAKNVFWDIETPLVPVLVAMERTGMLVDPGCLKDLSEGLESQID 576

Query: 608 SLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGD 664
            L   I  L+G+  FN+SSP QL  ILF  +  P+    KT  G + T A+ L+++   D
Sbjct: 577 ELAVRIRALAGDSDFNISSPMQLSHILFDVMGLPTKGLKKTHRGYYSTNARVLDEL-AQD 635

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           N +++ ILE+R+ +KIKSTY D+L   + ++  RVHT Y+   T TGRL+S  PNLQNIP
Sbjct: 636 NELVRLILEYREKTKIKSTYLDTL-GPLRRQDGRVHTTYNQTITATGRLSSSNPNLQNIP 694

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
            +++LG  ++ AF +      ++ DYSQIELR+LAH++    L + F    D H   AA 
Sbjct: 695 TRSELGHTVKTAFSAGEGALFLAVDYSQIELRLLAHLSGDEHLIRAFREGEDFHAETAAR 754

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV +++V+P++R  AK +NF I+YG   F L+  L IP SEA + I RYF  +PG+  
Sbjct: 755 VFGVPVDEVTPRLRSRAKAVNFGIVYGQQAFGLSQTLDIPVSEAQEMIDRYFEAYPGVRA 814

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           ++++T     + GY ET+FGRR    E+    ++ R+  ER A+N P+QGSAADI + AM
Sbjct: 815 FLDRTVAEAAERGYAETMFGRRRPIPELRMKNATQRSFGERTAMNHPMQGSAADIIKIAM 874

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
             V + L    L  KM+LQ+HDEL FE P  E+   S ++   ME      + L+VPL  
Sbjct: 875 RRVAERLHGGDLHAKMILQVHDELDFECPIAEVADVSAMVREEMEGV----VKLKVPLIA 930

Query: 965 NIKVSNNWQE 974
           ++     W +
Sbjct: 931 DVSTGVTWAD 940



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 149/284 (52%), Gaps = 10/284 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +VDG+S ++RAF+A P      DG P NA+ GF NM  K++     + IA    V FD  
Sbjct: 32  VVDGNSLMHRAFHAIPPSMNAPDGRPTNAVFGFLNMFLKMVDAFHPDGIA----VAFDKG 87

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R E+ P YKA RP + E L  Q P+++   +   IP +E  G+E DDI+ T   + 
Sbjct: 88  KPLVRMEMLPSYKAQRPPMDEDLHVQFPMIKQLLEHLSIPILEAAGWEGDDILGTLARLG 147

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDIEHVIKKW--GIPPEKMVCLQ 183
           E+EG  + +I+ D+D+ QL +    +  T   + + ++    V++    GI P  +    
Sbjct: 148 EQEGLDMLLITGDRDMYQLTTEHVKIVGTKRGLSDVQLMTPQVVEDLYHGITPALVPDFY 207

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS DNIPG+PGIG K A+ L+  YG+L+ ++ +A  +   K  EN+  + + A LS
Sbjct: 208 GLKGDSSDNIPGVPGIGPKKASALIMRYGSLDEVIAHAEEVP-GKMGENLRAHIDDALLS 266

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           R++  ++TD P+ + +  L     +   +   L  L    + NR
Sbjct: 267 RRVATIQTDAPVELDMRELSFPAFDAHAVHDALGELGIMAMQNR 310


>gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS]
 gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS]
          Length = 920

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 182/513 (35%), Positives = 300/513 (58%), Gaps = 25/513 (4%)

Query: 473 KLVLHRYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----L 521
           KL +H   ++ RG++      D  L +Y++  G+ S  +  ++   L Y R+E+      
Sbjct: 415 KLAMH--DLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLS---LRYLRRELRADNPA 469

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           + + S +      D Q  +  I  +  +L L   L  +L       +  R++ P+  V++
Sbjct: 470 QQQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSLLGRMELPVQRVLA 529

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME TGI +D D L+Q+ +E +  +    E  Y + G++ NL SPKQL  +LF +L+ P 
Sbjct: 530 EMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELEMPK 589

Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             +TKTG + T A  L+ + +   +P ++++L  R  +++K T  D L N +     R+H
Sbjct: 590 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 646

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T ++     TGRL+S EPNLQNIPI+T+ G++IR AF+      ++++ADYSQIE+RI+A
Sbjct: 647 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYTEVMTADYSQIEMRIMA 706

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + F    D+H  VA+  F V I++V+P +RR  K +++ + YG+S + LA 
Sbjct: 707 HLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAYGLSAYGLAA 766

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA   + +YF RF GI +Y+    +  R++GY  T+FGRR +  E++S   ++
Sbjct: 767 QLKISTEEAKVQMDQYFARFGGIRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRNV 826

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI V ++++D  L+++MLLQ+HDEL+FEV + E  T
Sbjct: 827 REAAERAALNAPIQGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDT 886

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +++   M  A      L VPL+V++    +W
Sbjct: 887 LEKLVRDKMGSAY----ALDVPLEVSVGYGRSW 915



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 161/305 (52%), Gaps = 20/305 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  YRAFYA P  + K   GL  NA+ GF  ML  LL++ +     SH A  F
Sbjct: 34  LMLLDGNSLAYRAFYALPAENFKTQGGLTTNAVYGFTAMLINLLRDEQP----SHVAAAF 89

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YKA R   P+    Q+ + +    A GI  +   GFEADDIIAT  
Sbjct: 90  DVSRQTFRVDKYPEYKAGRSSTPDEFRGQIDIAKEVLVALGIAVLAEPGFEADDIIATLA 149

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS   T LY         +   + V +K+G+ P++   
Sbjct: 150 TQAEGEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSDLTRFTPDAVQEKYGLTPQQYPD 209

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238
             AL GD  DN+PGIPG+G KTA   + EYG+L+ ++ N  ++K K     R N+     
Sbjct: 210 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQALVDNVDQVKGKVGDALRANLSHVV- 268

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              L+R+L  L  DVP+    + L ++  +  +L      LEF  L +R+  T     A 
Sbjct: 269 ---LNRELTDLVKDVPLPHTPDTLRVQPWDRDQLHRLFDDLEFRVLRDRLFETL----AA 321

Query: 299 IEPVV 303
           +EP V
Sbjct: 322 VEPEV 326


>gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
 gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
          Length = 829

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 154/398 (38%), Positives = 244/398 (61%), Gaps = 7/398 (1%)

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+  V+  ME  G+ ID D +K    E+ +    +   IY+ +G +FN+ SPKQLG +LF
Sbjct: 435 PLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEFNIGSPKQLGSVLF 494

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            KL  PS  KTKTG + T A  LE +    +PI+  I E+R L+K+++TY   L   + +
Sbjct: 495 EKLALPSAKKTKTG-YSTNADVLESL-MDKHPIVPLITEYRALTKLQNTYVTGLLKVVGE 552

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
              R+H+ +    T TGR++S EPN+QNIP++T LG+++RR F +     L+ ADYSQIE
Sbjct: 553 -DGRIHSTFKQTETRTGRISSAEPNIQNIPVRTPLGREMRRFFTAKDGCLLVDADYSQIE 611

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LAHI+    + + F + +DIH + A+++F   IE V+P +R  AK +NF I+YGI  
Sbjct: 612 LRVLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA 671

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F L+  + +   +A++YI+ Y  ++ GI  Y+E+T    +++GYVET+FGRR +  E+ +
Sbjct: 672 FSLSKDIGVSVPKASEYIRSYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRRYIKELAA 731

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
              +++   ER A N PIQG+AADI + AMI V+  L++  L  +++LQ+HDEL+ E  E
Sbjct: 732 KNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKESGLDARLILQVHDELIVEAKE 791

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +     + ++   ME A    + L VP+ V++ +   W
Sbjct: 792 DCAEKVALLLKEEMENA----VKLTVPMTVDVNIGKTW 825



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/289 (35%), Positives = 163/289 (56%), Gaps = 16/289 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DG+S + RAFY   +L+    G+  NA+ GF N L  L ++   + IA    V FD
Sbjct: 3   FLIIDGNSILNRAFYGIRVLTNSR-GVATNAVTGFMNTLLMLEKDVNPDMIA----VAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A+TFR+++Y  YKANR  +PE L  QLP ++    A GI  IE +GFEADDII T + 
Sbjct: 58  LKALTFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDIEH----VIKKWGIPPEKMV 180
               +    T+ + D+D  QLV+     Y TV+  + K DI +    +++++G+ P++M+
Sbjct: 118 ACADKKIPCTVSTGDRDSFQLVND----YVTVRLAKTKGDIYYTPDVIMEEYGVTPKQMI 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN-ASRIKQKKRRENILEYAET 239
            ++AL GDS DNIPG+PGIG KTA  L++E+ +++ +  N  S +  K  R  +    E+
Sbjct: 174 EVKALMGDSSDNIPGVPGIGEKTALSLIKEFASVDGVYENIGSTLITKGVRTKLENGKES 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             +SR+L  +    PI   L H + ++ +   L   L  LE  K++ ++
Sbjct: 234 CYMSRQLAEICLTAPIDTELSHYVPKERDDAELARLLSELEMYKMLQKL 282


>gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 864

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/408 (39%), Positives = 245/408 (60%), Gaps = 9/408 (2%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSP 626
           +Y  ++ P+  V++ M  TG+ +D+D ++Q   ++   L  +   I+  +G   FN +SP
Sbjct: 463 LYNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLRTELEQVLTRIHMETGSASFNPNSP 522

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG++LF  +  P G KT+ G W T A+ LE +   D P++++IL++R   K+ STY +
Sbjct: 523 KQLGEMLFDTMGLPHGKKTQRG-WSTDAETLESLR--DYPLVEDILQYRAYQKLNSTYVE 579

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L   I +   R+H+ ++     TGRL+S  PNLQNIPI+T+LG ++R  FI+ P   L+
Sbjct: 580 GLLKVIGE-DGRIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFIAKPGCVLV 638

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            ADYSQIELRILAHI     + Q F N  DIHR  AA+I+G+  E+V+ ++R  AK INF
Sbjct: 639 DADYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINF 698

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YG   + LA  + +   EA  ++K Y   FP +  Y++KT    +  GYV T+FGRR
Sbjct: 699 GIMYGKGAYSLAKDIGVSVKEADAFLKNYLAAFPKVSGYMDKTIADAKACGYVSTLFGRR 758

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
               E+ S   ++R+  ER A N PIQG+AAD+ + AM+ V K L + K+ ++++L +HD
Sbjct: 759 RALPELASSNFNVRSSGERMARNTPIQGTAADVIKLAMVRVWKRLRNEKMESRLILTVHD 818

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+ E P+ E   A+QI+   ME  C   +   VPL  ++    NW E
Sbjct: 819 ELIVEAPQAEAEKAAQILREEME-GC---VQYAVPLSTDVHAGKNWLE 862



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/300 (37%), Positives = 162/300 (54%), Gaps = 17/300 (5%)

Query: 1   MQKEN---HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           MQ  N    L ++DG+S   RAF+   LL+ K DG   NAI GF N+L  LL    KE  
Sbjct: 1   MQWRNTTMRLLVIDGNSIANRAFFGIKLLTTK-DGRYTNAIYGFLNILLSLL----KECE 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
               AV FD  A TFR+++Y  YKA R  +PE L  Q+P+++      G   +  +G+EA
Sbjct: 56  PDEVAVAFDLKAPTFRHKMYDGYKATRHGMPEELAQQMPVLKELLADLGYRTVTAEGWEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC--LYDTV----KEEKIDIEHVIKK 171
           DDI+ T             + + D+D +QLVS TT   L  TV    K   +D++ + +K
Sbjct: 116 DDILGTLAAACAARKDDCFLATGDRDSLQLVSDTTTVLLAATVMGRSKTVTMDVDAIQEK 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR 229
           +GI P +++ +++L GD+ DNIPG+ GIG KTA  L+Q +G LE +   I+   IK  K+
Sbjct: 176 YGIQPRQLIEVKSLMGDASDNIPGVKGIGEKTALTLVQNFGTLEGVYEHIDDKLIK-PKQ 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           RE++LE  E A+LS  L  +RTD PI        + + N    +  L+ LE   LI R  
Sbjct: 235 REHLLECREMAQLSHTLGTIRTDAPIDTAEGTYTVGEGNKAEAVRLLQELEIHSLIPRFG 294


>gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c]
 gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c]
          Length = 971

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 175/521 (33%), Positives = 285/521 (54%), Gaps = 20/521 (3%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K  H++K   L L   G ++ G   D  L +Y+   G+ S D+  +    L Y  +E+  
Sbjct: 458 KAAHDVKGPMLALAELGFTLAGVTSDTALAAYLALPGQRSFDLGDLV---LRYLHRELKA 514

Query: 523 SRKSS-------IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
               S       + ++ + +S   E  +  +  + +L   L   L       +   ++ P
Sbjct: 515 DEAPSDGQLTLDVEVEGVEESAEAEVDVVRARAVGELADALDGDLERRSAARLLRDIELP 574

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           ++ V++ ME  GI  D + L  + ++    +  + E  +++ G  FNL SPKQL  ILF 
Sbjct: 575 LLTVLAGMERAGIAADAEYLADLQSQYGTEVTKVVEAAHEIVGRPFNLGSPKQLQQILFE 634

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           +L  P   K KTG + T A  L  +    ++P+I  +L  R ++++K+     LP  +  
Sbjct: 635 ELGLPKTKKIKTG-YTTDADALAWLATNSEHPLIPTLLRHRDVARLKTVVESLLP--MID 691

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
              R+HT ++     TGRL+S +PNLQNIPI+T  G++IRRAF+  P  + L++ADYSQI
Sbjct: 692 DAGRIHTTFNQMIAATGRLSSTDPNLQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQI 751

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           E+RI+AH++    L + F +  D+H  VAA+ F + + +V P++RR  K +++ + YG+S
Sbjct: 752 EMRIMAHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYGLAYGLS 811

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + LATQL I   EA D ++ YF RF G+ +++    +  R++GY ETI GRR +  ++ 
Sbjct: 812 AYGLATQLGIHPDEARDQMEAYFARFGGVRDFLRGVVDQARKDGYTETILGRRRYLPDLT 871

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S  S  R + ER A+NAPIQGSAADI + AM+ V + L D  L +++LLQ+HDELV E+ 
Sbjct: 872 SDNSQRRQMAERMALNAPIQGSAADIIKIAMLGVDRGLRDAGLRSRLLLQVHDELVLEIA 931

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             E   A  ++   M  A      + VPL+V++   + W +
Sbjct: 932 PGERERAEALVRAEMANAY----TMSVPLEVSVGSGHTWDD 968



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 134/254 (52%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  YRAF+A P+ +     G P NA+ GF +ML   L++ +     +H AV +
Sbjct: 81  LLLLDGNSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINALRDEQP----THVAVAW 136

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D PA TFR+  Y +YKA R + P   + Q+ L+     A  +P++    +EADDIIAT  
Sbjct: 137 DLPAPTFRHAQYAEYKAGRAETPSDFVGQISLIHQVCDALAVPSLSAASYEADDIIATLA 196

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
              E  G  V I++ D+D +QLV+    +  T K      +   + V  K+G+ P +   
Sbjct: 197 TQGEAAGMDVLIVTGDRDALQLVTGQVTVLMTRKGISDMVRYTPDEVEAKYGLTPAQYPD 256

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P +PG+G KTA   +Q++G+L  ++  A  +  K  +       +  R
Sbjct: 257 FAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAAMVDRADEVSGKAGQSLRDHLGDVIR 316

Query: 242 LSRKLVMLRTDVPI 255
            +R L  L  DVP+
Sbjct: 317 -NRSLTELARDVPL 329


>gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
 gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
          Length = 885

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 185/501 (36%), Positives = 288/501 (57%), Gaps = 11/501 (2%)

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA-QKWLSYTRKEILKSRKSSIPIDKIS 534
           L + G+  + + DIML+ YVL +  ++ D+ SI   ++     K  ++ +K ++  D++S
Sbjct: 392 LFKSGLEYKDYFDIMLVWYVLGT-EAAQDLESIIFSEFQVLLEKYEVEFKKQNM--DEVS 448

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +  E   + S  + +L  +L  +L  E L +VYE ++K ++ V++ ME  GI ID D 
Sbjct: 449 PERKAEFLTKRSYYMTRLKEILGHRLEAEGLNNVYENIEKKLVPVLADMEKKGILIDPDY 508

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
             +   E+  NL  +E+NIY L+GE+FN++SPKQL +ILF K+      KTKTG + T  
Sbjct: 509 FGKYGNELKNNLAEIEKNIYGLAGEEFNINSPKQLSEILFEKMMLDPVKKTKTG-YSTDV 567

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE +      + + ILE+R  +K+ +TY + LP  +     R+HT +    T TGRL+
Sbjct: 568 EVLEVLAAQGVEVAEKILEYRGYTKLLTTYVEPLP-KLADSENRIHTTFHQNGTATGRLS 626

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PN+QNIP+KTD G KIRR F+S      IS DYSQIELR+LA +++   L   ++  
Sbjct: 627 SSNPNIQNIPVKTDEGIKIRRGFVSEEGWSFISFDYSQIELRVLAELSEDETLILAYQKD 686

Query: 775 LDIHRMVAAEIF-GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            D+H + A ++F   + E VS + R  AK INFSI+YG +PF L+ +L+IP  +A  YI 
Sbjct: 687 KDLHDLTARKLFFKTDEEPVSREERSIAKVINFSILYGKTPFGLSKELKIPMGDAKLYIN 746

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF  +P +  ++       + NG+VET++G R +   INS   +I    +R A+N  +Q
Sbjct: 747 KYFEEYPRVRTFLNSVLQEAKLNGFVETLYGTRRYITGINSSNKNIEAQADRMAVNTVVQ 806

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AA+I +  M+ +++  +D K    MLLQ+HDEL+FEV  E +    + I + ME    
Sbjct: 807 GTAANIIKIVMVKLYEEFKD-KEDINMLLQVHDELIFEVKNESVDKYLKEIDNIMENTIK 865

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
            K    V L  N  V  NW E
Sbjct: 866 LK---NVRLAANGNVGKNWGE 883



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 140/285 (49%), Gaps = 14/285 (4%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D S+ +YR  +A  +  R   G    A  GF N L  ++    KE    +     D  
Sbjct: 6   ILDTSAIMYRTHFAL-MGMRNSKGKATGATYGFINTLNLII----KEFSPDYLVACLDVK 60

Query: 69  AVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R     +YKA+R  +PE L+ Q+P +     A+ IP  ++ G+EADD+IAT    
Sbjct: 61  RSELKRTSELTEYKAHREDMPEELVYQIPKIMEVLDAYNIPKYKVDGYEADDVIATLAKK 120

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEH-VIKKWGIPPEKMV 180
              +   V I++ DKDLMQL+     +    K +       I  E  V++  G+ P++++
Sbjct: 121 FSDDNNEVFIVTGDKDLMQLIKDNINIALLGKGDGKSQFKYIQTEQDVVEYLGVRPDQVI 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L GD  D IPGI GIG KT   L+ +YGNLE +  N   IK  KR+E +    E A
Sbjct: 181 DLFGLMGDKSDGIPGIQGIGPKTGVELISKYGNLETLYENIEEIKG-KRKEKLENEKENA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            LSR+L  +  D+ +    E L  E+ N  +LI   K +EF + +
Sbjct: 240 FLSRELATVHMDLDVEYNKEKLKYEEKNMDKLIPLYKEMEFKRFL 284


>gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63]
          Length = 854

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 170/485 (35%), Positives = 280/485 (57%), Gaps = 23/485 (4%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI L +Y+++   SS D          Y+ K +  S + ++P+   +D Q +++  E   
Sbjct: 388 DIELAAYLIEP--SSKD----------YSDKNLCASYEIALPV--CTDEQNEKY--EAFA 431

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
              +L   L  K+       +   ++ P+  V+++ME  G+ +D+  ++     +S  + 
Sbjct: 432 CYAELCEKLGDKIKAHGQEKLLSEIEIPLAKVLARMENIGVCVDRQGIESYGEMLSAQIK 491

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            LE  IY+ +G +FN++SPKQLG +LF  L  P   KTK+G + T A+ LE +   ++P+
Sbjct: 492 ELETAIYESAGCEFNINSPKQLGVVLFENLGLPCKKKTKSG-YSTNAEVLESLRY-EHPV 549

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           ++ +L +R LSK+ STY + L   I     R+H+ ++   T TGR++S EPNLQNIP++T
Sbjct: 550 VEMVLRYRTLSKLNSTYCEGLLKVI-ADDGRIHSNFNQTETRTGRISSTEPNLQNIPVRT 608

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           +LG+++R+ F +     L+ ADYSQIELR+LAHI+    + + F+++ DIH + A+++F 
Sbjct: 609 ELGREMRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAITASQVFN 668

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           + ++ V+P MR  AK +NF I+YGI  F LA  + +   EA  YI+ Y   + G+  Y++
Sbjct: 669 MPLDMVTPIMRSRAKAVNFGIVYGIGAFSLAKDIGVSNKEAKHYIESYLAHYSGVDSYMK 728

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                   +GYVET+FGRR +  E+ S K  IR   ER A N PIQG+AADI + AMI V
Sbjct: 729 NVVEKANADGYVETMFGRRRNLPELTSSKHMIRAFGERVARNMPIQGTAADIIKIAMIKV 788

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            + ++   L  +++LQ+HDEL+ E P++E    + I+   ME A    + + VPL  +  
Sbjct: 789 DERMKAENLRARLVLQVHDELIVEAPQDESMRVALIVQEEMENA----VKMSVPLTADAA 844

Query: 968 VSNNW 972
           +   W
Sbjct: 845 IGRTW 849



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/311 (33%), Positives = 163/311 (52%), Gaps = 17/311 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L  VDG+S + RAFY    L+ K DG   NAI GF  ML+K+      +++A    + F
Sbjct: 2   RLLAVDGNSIVNRAFYGIRPLTTK-DGQFTNAIYGFLTMLYKIKNEENPDAVA----IAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D    TFR++ Y  YKA R  +PE L  Q+ PL +L T   G   +  +GFEADDI+ T 
Sbjct: 57  DLKTPTFRHKAYAGYKATRKGMPEELASQMEPLKKLLT-LLGYRLVTCEGFEADDILGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWGIPPEKMV 180
               E+ G    I + D+D +QLVS  T ++  +   K DI    E +++ +G+ P++++
Sbjct: 116 AKACEENGNECVIATGDRDSLQLVSDKTSVH--LCSNKQDILYTPEKILETYGVTPKELI 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-RENILEYAET 239
            ++A+ GD+ DNIPG+ GIG K A  L+Q Y  +E I  +   ++ K   R+ +    E 
Sbjct: 174 EIKAIQGDTSDNIPGVAGIGPKGAGDLIQRYHTVEYIYDHLDELEIKDGVRKKLTASKEN 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LSR L  +  + P+   +E+ +++  +      F+  LE   LI +     D    N 
Sbjct: 234 AILSRMLGEINCNAPVDTNVENYVVDMKDADECAGFMAKLELFSLIEKYGIKVD---KNA 290

Query: 300 EPVVLDINTTE 310
           +P  ++ N+ E
Sbjct: 291 KPEKVEKNSLE 301


>gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
 gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
          Length = 903

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/453 (38%), Positives = 277/453 (61%), Gaps = 12/453 (2%)

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K   S +P++     +  E  ++ S  +  ++  L+ ++ +E +  ++  ++  +I ++S
Sbjct: 461 KEDPSKLPVE-----EYGEFMMKRSESLYDIYKDLKNRIELEDMHDLFYNVEMKLILILS 515

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI ID +  ++ S E+S  L  L++NI+ +S E+FNL+SPKQL +ILF KL    
Sbjct: 516 KMEQEGIAIDPEYFREFSLELSDKLQELKKNIFKISEEEFNLNSPKQLAEILFMKLNIEP 575

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +KTKTG + T    LE +      I + IL++R+L+K++STY D+LP   ++R  R+HT
Sbjct: 576 VSKTKTG-FSTNVDVLETLRDRGEKIAEYILDYRKLTKLQSTYVDALPKLADERN-RLHT 633

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            ++     TGRL+S  PNLQNIP+K+D G KIRR FIS     L++ DYSQIELR+LA +
Sbjct: 634 TFNQTGAATGRLSSSNPNLQNIPVKSDEGIKIRRGFISDKGNTLLAIDYSQIELRVLAEL 693

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +K   L + + + LD+H + A +IF ++ + V+   R  AK +NFSIIYG +PF L+ +L
Sbjct: 694 SKDETLIKAYSDGLDLHDLTAKKIFDIDTD-VTRSQRTMAKIVNFSIIYGKTPFGLSKEL 752

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I + +A +YIKRYF ++P + E  EK      + GYV+T FGR+   D I+S   +I+ 
Sbjct: 753 GISQKDAKEYIKRYFEQYPRVKELEEKIIKNAEETGYVKTYFGRKRSVDGISSKNGNIKK 812

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             +R A+N  IQG+AADI ++ MI + K ++  K   KM LQ+HDEL+FEV +E +   +
Sbjct: 813 QADRMAVNTVIQGTAADILKKVMIEIDKKIK-DKNDIKMNLQVHDELIFEVKDESVEKYA 871

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +I + ME +   K    V L+ N+    NW E
Sbjct: 872 DLIKNIMENSIKFK---NVKLEANVAQGKNWAE 901



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 18/292 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRAF+A      K++  P  A+ GF N L  ++     + I + F V     
Sbjct: 6   LLDVSAIMYRAFFAHMNFKTKNE--PTGAVFGFTNTLLSIIDEFSPDYIGAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +   R+E Y DYK+ R  IPE L+ Q+P +      FGI   +I G EADD+I       
Sbjct: 61  STLKRSEKYKDYKSARKPIPEDLVTQIPRIEDLLDCFGIEKFKIDGHEADDVIGALAKKL 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
             +   V II+ DKDL QLV        L     +E+  I    E V+++ G+ P  +  
Sbjct: 121 SADNIEVYIITGDKDLSQLVDDNINIALLGKGEGKERFKILRTEEDVVEQLGVKPNDIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GD+ D IPG+  IG K A ++LQ+Y NLE +  +   +       K   +NI E 
Sbjct: 181 LFGLIGDASDGIPGVRKIGSKKALVMLQKYKNLEGVYNHIDELSDLPGIGKGLVKNIEED 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            + A LSR L  +  ++P+     H +       RL +  K LEF  LI ++
Sbjct: 241 KDLAFLSRDLATIDLEIPVDYD-PHKLQHGIEKNRLYNLFKNLEFKALIKKL 291


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score =  308 bits (788), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 181/516 (35%), Positives = 296/516 (57%), Gaps = 17/516 (3%)

Query: 465 IGHNIKYD-KLVLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           +G N+K+D  L+ ++YG+  +  F D M+M+++ D G S   + S+AQK+  Y  K   +
Sbjct: 392 VGQNLKFDLSLLYNQYGMEEVLPFADTMIMAWLTDPG-SRVGLDSLAQKFFKYDMKPFKE 450

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER---LDKPMIDV 579
             K       ++ +    +A E++ +   L+  ++ K+ +  L H+ +    ++ P I+V
Sbjct: 451 MVKKGENFSHVNIADATFYAAEDAWMTFLLYGAIKKKMELSSLTHLLKEAKDVEYPFINV 510

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           + +ME  GI++DQ  L+ +   +S++L  L   I++LSG +FN+ S +QLG +LF  L  
Sbjct: 511 LIRMERLGIKVDQVKLETLKKTLSEDLHRLTSEIHELSGSEFNIRSTQQLGVVLFQHLGL 570

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK-RTQR 698
             G KTKTG + T    L+ +   ++P+I  ILE+R+  K+ STY + L     K    R
Sbjct: 571 KGGKKTKTG-YSTNEAVLQSLKH-EHPVIGKILEYREYHKMLSTYVEPLLKLAKKDEKSR 628

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           ++T +    T TGRL+S +PNLQNIP+++ LG+ +R AF++    KL+S DYSQIELR+L
Sbjct: 629 IYTSFIQTGTATGRLSSKDPNLQNIPVRSTLGRSVREAFVAKEGYKLVSIDYSQIELRLL 688

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH +K   L + F    DIH   A ++FG   E+ +   R  AK++NF ++YG+ P +L+
Sbjct: 689 AHFSKDAALMEAFNKGTDIHMATAVKLFG---EEEAKAKRNFAKSVNFGLLYGMGPKKLS 745

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L I  +EA + I  YF  FP +  ++E  +  V+ +GYVET+  RR  +D  N+    
Sbjct: 746 DELGITSAEAKEIIANYFASFPTVKNFLEGIQERVKIDGYVETLLKRRRIFDYENA-NGM 804

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            +    R ++N   QGSAAD+ + +M  +   + D  L   MLLQIHDEL+FE+ E+++ 
Sbjct: 805 QKAAYMRESVNTVFQGSAADLIKLSMNDIDSMIIDEALEAHMLLQIHDELIFEIREDQVE 864

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             S+  VH ME        L VPL  ++ V ++W E
Sbjct: 865 KISKRFVHVMEHIW----ELEVPLVCSVSVGDSWGE 896



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 149/261 (57%), Gaps = 6/261 (2%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D   F +R++YA P L R  +G P   + GF N    L+ +  ++    +     D  
Sbjct: 6   IIDTFGFFFRSYYALPPL-RNSEGFPTGLLTGFIN----LVDSLHRDHGTDYLVFALDSK 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFRNEIYP+YKANR   PE L  QLP+     +  G   +  +GFEADDII T T  A
Sbjct: 61  GPTFRNEIYPEYKANREAPPEDLTKQLPVAIRWVEKMGFANLAKEGFEADDIITTVTKFA 120

Query: 129 EKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
            ++   V ++S DKDL QL+      +YD++K ++ID    I+K+G+ P+  V  QA+ G
Sbjct: 121 REQDMKVKVVSHDKDLYQLIDDGLVVMYDSIKRKEIDEAACIEKFGVNPKDFVDFQAIVG 180

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DN+PG+ GIG K AA L+ E+  LENI  N  +    + ++ +LEY E+A LSR+LV
Sbjct: 181 DASDNVPGVKGIGVKGAAKLINEFHTLENIYANIEKCGTPRIQKLLLEYKESAFLSRELV 240

Query: 248 MLRTDVPITIPLEHLILEDCN 268
            +R DV   + L   + E+ N
Sbjct: 241 KMRDDVYDDLDLSKFVFEERN 261


>gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191]
 gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191]
          Length = 862

 Score =  308 bits (788), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 190/532 (35%), Positives = 292/532 (54%), Gaps = 26/532 (4%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
           + LT+E L  +++   N+  LKI +++K+    L      +    D+ L +Y L+ G   
Sbjct: 351 DNLTQEELLKIEELANNKQILKISYDVKFTLRALDVTPKEIINCFDVRLAAYSLNPG--- 407

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
              A I  K L+    +++           I     +E     +  I  L  +L   L  
Sbjct: 408 ---ADIGFKALAAQYLDVI-----------IEPKDEKEFLTLQNQYIWSLKEVLERDLKE 453

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           +    ++  L+ P+I V+  ME  G+ +D+  L+  S  +   + +++ +I   +  + N
Sbjct: 454 KDQFKIFNELELPLITVLLAMEEIGVLVDKAWLENFSKTLEGEIAAIQNDINKDAQREIN 513

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG +LF +LK PS  KTKTG + T  + L+Q+    +PI+K ILE+R  +K+KS
Sbjct: 514 VNSPKQLGALLFDQLKLPSVKKTKTG-YSTDEEVLQQL-VNLHPIVKKILEYRSNAKLKS 571

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+L   +     RVHT+     T+TGRL+S  PNLQNIPI+T  G+ +RRAF++   
Sbjct: 572 TYVDNLI-MLADGNSRVHTYLDQTGTVTGRLSSSSPNLQNIPIRTPKGRMLRRAFVAEGG 630

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           K L+S DYSQI+LR+LAH ++ + L   F+   DIH   AAE+FGV  E VS +MR  AK
Sbjct: 631 KTLLSVDYSQIDLRLLAHESQDSVLVNAFKEGGDIHTKTAAEVFGVMREMVSDEMRSSAK 690

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            INF IIYG  P  L+  L I   EA +YI  YF  + G+ E+I+K     R+ GYV+T+
Sbjct: 691 AINFGIIYGQGPMGLSQNLNISVREAKEYIDNYFAVYKGVREWIDKNIALARERGYVKTL 750

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            G   +  E       + +  +RAAIN  +QG +AD+ ++AM  +    +  ++  KMLL
Sbjct: 751 LGHIRYLPEFKMGSGHMASFAQRAAINTIVQGGSADVIKKAMADIFNHYKGTEV--KMLL 808

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q+HDEL+FE+PE+ +   + +I + ME      I L+VPL    K   NW E
Sbjct: 809 QVHDELIFELPEKNLLKEAAVIKNKMEHT----IELKVPLLAEAKTGVNWYE 856



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 152/290 (52%), Gaps = 19/290 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +++ D  +F++R ++A P LS    GL V A+ GF   L KL++  +      + AV FD
Sbjct: 8   IYIADAHNFLHRNYHALPKLSTSQ-GLEVGALYGFVRWLVKLVEEKKPH----YVAVCFD 62

Query: 67  -YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                T R +++ DYKA+R  + E LL QL L R      G+    +QG EADDII    
Sbjct: 63  SRGGSTKRKKMFSDYKAHRKPVDEALLTQLQLAREVVSGMGLKVFAVQGIEADDIIG--- 119

Query: 126 YIAEK---EGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWGIPPEKMV 180
           +IA+K   EG    + ++DKD +QL++    L+     KE     ++V +K+ I  + + 
Sbjct: 120 FIAKKSVAEGADAVLATSDKDALQLLNEHIKLWPAGAAKESLKGPDYVKEKFNIAQKYLT 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS----RIKQKKRRENILEY 236
              A+ GDS DN+PG+ G+G KTAA L+  +G LE+I+  A     +IK K   + I++ 
Sbjct: 180 DYLAIVGDSSDNVPGVAGLGPKTAAELINNFGYLEDIIKEAKAGNPKIK-KGAAQKIIDN 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
              A LS++LV L  ++P+   LE  +       +L       EF  L++
Sbjct: 239 EAVAILSKQLVTLDENIPMDFTLEDAVFSPPAPAKLSELFAKYEFKNLLS 288


>gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
 gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
          Length = 901

 Score =  307 bits (786), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 178/541 (32%), Positives = 300/541 (55%), Gaps = 21/541 (3%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE------DIMLMSYVL 496
            TLT++    L ++  +E+  K+GH++K     LH  G+  RG+       D  L +Y++
Sbjct: 370 TTLTEDDERALGEWLADENIHKVGHSLKK---ALH--GLRSRGWRLAGLVMDTELAAYLV 424

Query: 497 DSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
             G+ S  +  +  ++L    R E ++       +D  SD+++    +  +  +L+L   
Sbjct: 425 RPGQRSFKLDDLVLRYLGKELRSEGVEGDGQLSLLDTDSDNEIVRRELVRARAVLELSSA 484

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           L  +L       +   ++ P++ +++ +E  GI +D D+L ++ A  +  +    E  Y 
Sbjct: 485 LSAELAAIGATTLLADIELPLLSMITDLEAAGIAVDIDVLTELEAHYANRVKQATEQAYS 544

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEW 674
           + G++ NL SPKQL  +LF +L  P   +TKTG + T A  L+ +    ++P ++ +LE 
Sbjct: 545 VIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADALQTLYEKTEHPFLQYLLEH 603

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           R  +K++ST  + L   +     R+HT      T TGRL+S++PNLQNIP++TD G++IR
Sbjct: 604 RDATKLRST-VEGLIKAVAD-DGRIHTTLHQTITATGRLSSVDPNLQNIPVRTDEGRRIR 661

Query: 735 RAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
            AF+      +L++ADYSQIE+RI+AH++    L + F +  D H   AA +F V+  +V
Sbjct: 662 EAFVVGEGYAELMTADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAATAARVFDVDPTEV 721

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           + + R   K +N+ + YG+S + L+ QLRI   EA   +  YF RF G+ +Y+       
Sbjct: 722 TGEQRAKIKAMNYGLAYGLSAYGLSQQLRISTEEARALMDEYFLRFGGVRDYLHSVVERA 781

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
            + GY ETIFGRR +  ++ S     R + ER A+NAPIQGSAADI + AM+ VH++L +
Sbjct: 782 AKEGYTETIFGRRRYLPDLTSTNRQRREMAERMALNAPIQGSAADIIKVAMLGVHRALAE 841

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             L +++LLQ+HDEL+ EV + E     +++   M  A      L VPL+V++    +W 
Sbjct: 842 AGLRSRVLLQVHDELMLEVADGEHAQVEELVRREMGSAY----ELSVPLEVSVGYGRSWN 897

Query: 974 E 974
           +
Sbjct: 898 D 898



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 105/290 (36%), Positives = 159/290 (54%), Gaps = 17/290 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P    R   G   NA+ GF +ML  LL    ++   +H AV F
Sbjct: 16  LLLIDGHSMAYRAFFAVPADRFRTSTGQVTNAVFGFTSMLINLL----RDEAPTHVAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E + DYKANR   P+    Q+ L++    A  IP + ++G+EADD+IAT T
Sbjct: 72  DVSRKTFRSETFADYKANRLATPDDFKGQVELIKDVLGALSIPVLAVEGYEADDVIATLT 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY------DTVKEEKIDIEHVIKKWGIPPEK 178
             A  + + V I + D+D +QLV+ + T LY      D V   + D E V +K+G+ P +
Sbjct: 132 AKAGDD-YEVLICTGDRDALQLVTDSVTVLYPRKGVSDLV---RFDPEGVQEKYGLSPAQ 187

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA  ++++G+L  ++     +K K   E +  + +
Sbjct: 188 YPDFAALRGDPSDNLPGIPGVGEKTAAKWIRQFGSLGELIDRVDEVKGKV-GEALRSHLD 246

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +  L+R+L  L  DVP+ +  + L L+  +   +      LEF  L +R+
Sbjct: 247 SVMLNRQLTELVRDVPLEVTPDDLALKPWDRDAVHRLFDELEFRVLRDRL 296


>gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 452

 Score =  307 bits (786), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 169/457 (36%), Positives = 266/457 (58%), Gaps = 26/457 (5%)

Query: 141 DKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIG 200
           DKDLMQLV+    +YD++K+++I I  V++KWG+PPEKM+ LQA+TGDS+DN+PGIPGIG
Sbjct: 1   DKDLMQLVTANVHMYDSMKDKQIGIPDVVEKWGVPPEKMIDLQAMTGDSVDNVPGIPGIG 60

Query: 201 YKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
            KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   E A+LSR+LV LRTDVP+ + L+
Sbjct: 61  PKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANIEMAKLSRELVRLRTDVPLDLDLD 120

Query: 261 HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL-----------DINTT 309
            L+LE  NGP+LI FLK +EFT L  RVA   DCDA+ IEP V+           D++  
Sbjct: 121 ALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDASAIEPAVVRIEWGDAAHGPDLDAA 180

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
           E   +A          +            + +    +P  L   R +  +  P ++ +Y 
Sbjct: 181 EPAPVAGGV-----PDVSGPSVPVPPRAKAGVEGAFSPADLAKARAEAFATLPFDHSTYV 235

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ-KDDTSFKVETIF 428
            I +   + +W+      G  +F   T ++DA  ++ +  +++  D   D T  K+   +
Sbjct: 236 TIRDLATLDRWIADARDTGLVAFDTETTSLDAMQAELVGFSMAIADNVADPTGTKIRAAY 295

Query: 429 IDLS-----VHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
           + L+              +N +  ++ L  LK   E+   LK+  N+KYD L++ RYGI 
Sbjct: 296 VPLAHKNGVGDLLGGGLAENQVPMRDALPRLKALLEDAAVLKVAQNLKYDYLLMKRYGIE 355

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            + F+D ML+SYVLD+G  +H +  +++K+L +T    K++  S ++++  D +   +  
Sbjct: 356 TKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRAT 415

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            +A E+++V L+LWL+L+P+L    L  VYERL++P+
Sbjct: 416 HYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPL 452


>gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
 gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
          Length = 893

 Score =  306 bits (785), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 174/528 (32%), Positives = 288/528 (54%), Gaps = 12/528 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511
           L+++  + H+ KI H+ K     LH +   ++G   D  L +Y+    + S+ +  ++ +
Sbjct: 373 LRQWLMDPHYPKIVHSAKEAWHALHSFSGGVKGVIADTELAAYLAFPDQRSYGLEDLSIR 432

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           ++S     +    + S+ +               + V+ QL   L  +L    L  +Y+ 
Sbjct: 433 YVSRDITPVAHQAQGSLDLGLDDTDDALRALANRAAVLPQLAQALDAELSDRSLTALYQE 492

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V++QME  G+ +D + L+ + A  +      ++  ++  G + NL SPKQL +
Sbjct: 493 MELPLTVVLAQMEHVGVAVDLEQLRSLDAFFAHQGSEAQKAAFEAIGRQVNLGSPKQLQE 552

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQ--INCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           +LF +L  P   K KTG + T A  L    +  G +P ++++LE+R  +K++ T    L 
Sbjct: 553 VLFDQLDMPKTKKIKTG-YTTDAASLADLFVKTG-HPFLQHLLEYRDSTKLRQTVEGLLK 610

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISA 748
           +  +    RVHT +      TGRL+S +PNLQNIPI+T+ G++IR+ F+       L++A
Sbjct: 611 SVADD--GRVHTTFQQTVAATGRLSSTDPNLQNIPIRTETGRRIRQGFVVGEGLDTLLTA 668

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIE+RI+AH+++   L   F+   D+H  V A +FGV+I++V+PQMR   K +++ +
Sbjct: 669 DYSQIEMRIMAHLSQDDGLISAFQAGEDLHNFVGARVFGVSIDEVTPQMRSKVKAMSYGL 728

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            YG+S F L+ QL I   EA+  +  YF RF G+ +Y+       R  GY ETI GRR +
Sbjct: 729 AYGLSAFGLSKQLNISVGEASTLMDDYFTRFGGVRDYLTSVVARARTTGYTETIMGRRRY 788

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             ++ S     R   ER A+NAPIQGSAAD+ ++AM+ V  +     L++++LLQIHDEL
Sbjct: 789 LPDLTSDNRQRRENAERVALNAPIQGSAADVIKQAMLGVDAAFRSEGLSSRLLLQIHDEL 848

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           + EV   E   A +I+   M  A    + L VPL V++    NW +  
Sbjct: 849 IVEVAPGEQEIAERIVREEMAGA----MQLSVPLAVSVGTGQNWHDAG 892



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/287 (35%), Positives = 157/287 (54%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAF+A P        G   NA+ GF +ML  L++N +     +H  V F
Sbjct: 5   LLIIDGHSMAFRAFFALPADKFMTSGGAYTNAVHGFISMLATLIKNEQP----THVGVAF 60

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR E++P YK  R   PE    Q+ L++    A  I  +E   FEADDI+AT++
Sbjct: 61  DAGAHTFRTEVFPQYKGTRDATPEPFKGQVALIKEVLDAMNIRYLEKDRFEADDILATWS 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             A + G  V + S D+D +QLV+   T LY    V E ++   E V +K+G+ PE+   
Sbjct: 121 TCAAEAGMEVLLCSGDRDTLQLVNDHVTVLYPVKGVSELKRYTPEAVEEKYGVRPEQYPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G++ DNIPG+PG+G KTAA  + ++G+L  +L +A  IK  K  E + ++ +  R
Sbjct: 181 LAALVGETSDNIPGVPGVGPKTAAKWVNQFGSLTEVLNSAETIK-GKVGEKLRDHLDQVR 239

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +R++  L TDV + +    L ++  +  +L      LEF  L  R+
Sbjct: 240 QNREINRLLTDVDLDVMPNDLTVQQWDRNKLHEIFDMLEFRTLRERL 286


>gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec]
 gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec]
          Length = 911

 Score =  306 bits (785), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 176/527 (33%), Positives = 285/527 (54%), Gaps = 11/527 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L  +  +    K GH++K   L L   G ++ G   D  L +Y+   G+ S D+A +A +
Sbjct: 392 LGDWLADPDRAKAGHDLKGPMLALAEAGFTLAGVTSDTALAAYLALPGQRSFDLADLALR 451

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +L    K    S    + +D   ++   E     +   L+L   L   L       +   
Sbjct: 452 YLHRELKSDAPS-NGQLTLDGSGEADEAEADAIRARAALELADALDGDLERRSAARLLRE 510

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P++ +++ ME  GI  D+D L ++       +  +    + + G  FNL SPKQL  
Sbjct: 511 MELPLVTILATMERAGIAADEDHLLELQKHYGGEVSDVAAQAHGIVGRTFNLGSPKQLQQ 570

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPN 690
           ILF +L  P   + KTG + T A  L  +    D+P+I  +L  R ++++K T  DSL  
Sbjct: 571 ILFDELALPKTKRIKTG-YTTDADALAWLATQSDHPLIPVLLHHRDVARLK-TVVDSLIP 628

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISAD 749
            I+    R+HT ++     TGRL+S +PNLQNIPI+T  G++IR+AF+     + L++AD
Sbjct: 629 MIDD-AGRIHTTFNQMIAATGRLSSTDPNLQNIPIRTPQGRQIRQAFVVGQGYETLLTAD 687

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE+R++AH++    L + F +  D+H  VAA+ FG+ + +V P++RR  K +++ + 
Sbjct: 688 YSQIEMRLMAHLSGDAGLIEAFASGEDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLA 747

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+S F LA QL I   EA + +  YF RF G+ +++    +  R++GY ETI GRR + 
Sbjct: 748 YGLSAFGLAGQLGIAPDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETIMGRRRYL 807

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            ++ S  +  R + ER A+NAPIQGSAADI + AM+ V ++L    L++++LLQ+HDELV
Sbjct: 808 PDLTSDNTQRRQMAERMALNAPIQGSAADIIKIAMLGVGRALRSRDLSSRLLLQVHDELV 867

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            E+   E      ++   M  A      + VPL+V++     W E  
Sbjct: 868 LEIAPGERAEVEALVRAEMGSAY----EMSVPLEVSVGAGRTWDEAG 910



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H AV +
Sbjct: 27  LLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEKP----THVAVAW 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+  Y +YKA R + P   + Q+ L+     A  +P +   G+EADD+IAT  
Sbjct: 83  DLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCDALAVPGVSAAGYEADDVIATLA 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A  EG  V +++ D+D +QLV+    +  T K      +   + V  K+G+ P +   
Sbjct: 143 TQASAEGMDVLVVTGDRDALQLVNERVTVLMTRKGISDMTRFTPDEVQAKYGLSPAQYPD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P +PG+G KTA   +Q++G+L  ++  A  I  K    ++ E+     
Sbjct: 203 FAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVDRADEIGGKT-GASLREHLSNVI 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +R L  L  +VP+ +    L L   +   +      L+F  L  R+
Sbjct: 262 RNRSLTELAREVPLELTPADLRLHPWDREAVHQLFDTLQFRVLRERL 308


>gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus]
          Length = 889

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/510 (34%), Positives = 297/510 (58%), Gaps = 23/510 (4%)

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H  K    +L   GI + G   D  L +Y+L  G+ ++ +A + Q+ L  T    L +  
Sbjct: 394 HEAKAAFHMLAGRGIELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKT----LSAAT 449

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             + +  + +S +    ++ +  I++L   L  +L       +Y  L+ P++ ++++ME 
Sbjct: 450 EQLSL--LDNSSL----VDQAAAIMELAERLTAELQEIDSFELYTDLELPLVTILARMEA 503

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK 644
           TGI +D D+L+       + +   E    +L+G+ K NL+SPKQL  +LF   + P   K
Sbjct: 504 TGIAVDVDILETQKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKK 563

Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           TKTG + T A+++EQ+   + +P + ++L  R+  K+K+T  + L   +     R+HT +
Sbjct: 564 TKTG-YSTAAKEIEQLAAKNPHPFLDHLLAHRKYQKMKTTL-EGLIKTVQP-DGRIHTTF 620

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762
           +     TGRL+S EPNLQNIP++T+ G++IR AFI      +L++ADYSQIE+R++AH++
Sbjct: 621 NQTVASTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLS 680

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L + ++   D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL 
Sbjct: 681 ADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLG 740

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP  EA   ++ YF RF G+ +Y+++     R++GY  T+FGRR +  E+NS     R  
Sbjct: 741 IPAGEAKSIMESYFERFGGVKKYLDEVVAQARKDGYTATLFGRRRYLPELNSDNRLAREN 800

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ERAA+NAPIQG+AADI + AMI V ++L+  K  +++LLQ+HDELV EV   E     +
Sbjct: 801 AERAALNAPIQGTAADIIKVAMIRVDRALQGMK--SRVLLQVHDELVVEVAPGEADEVRE 858

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           I+   M+ A    I L VPL+V+     +W
Sbjct: 859 ILEREMDSA----IELNVPLEVSAGAGKDW 884



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 151/288 (52%), Gaps = 13/288 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P+ +     G   NA+ GF +ML  ++     ++IA    V F
Sbjct: 18  LLLIDGHSMAFRAFYALPVDNLSTSGGQHTNAVYGFLSMLSNIVAEEAPDAIA----VAF 73

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E++PDYKA R   PE    Q+ L+R   +  GI  +  + FEADDI+AT  
Sbjct: 74  DVGRKTFRTEMFPDYKAQREAAPEEFKGQVDLIREVLEVLGITTLSRENFEADDILATLA 133

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
              E + +   I++ D+D +QLV+ +T +   +K      +     V +K+G+ P +   
Sbjct: 134 --TEAQDYETLIVTGDRDYLQLVNESTTVLYPMKGVSTLHRFTPSAVEEKYGLTPAQYPD 191

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIP +G KTA   + +YG+L +++ +A  IK      N  E  E  +
Sbjct: 192 FAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEIKGVVGN-NFRERIEQVQ 250

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288
           ++RKL  + TD+ + +    L  ++     + +    LEF T L +RV
Sbjct: 251 MNRKLTQMITDMDLEVGPNDLAFKEAKVADVAAKFDDLEFGTSLRDRV 298


>gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 317

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 152/311 (48%), Positives = 208/311 (66%), Gaps = 5/311 (1%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNI
Sbjct: 8   DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNI 67

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F +  DIH   AA
Sbjct: 68  PVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAA 127

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           EI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ 
Sbjct: 128 EIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVM 187

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++A
Sbjct: 188 QYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKA 247

Query: 904 MISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           M+ V + +E +     K+L+Q+HDELVFEV E  ++     +   ME A      L VPL
Sbjct: 248 MLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPL 303

Query: 963 KVNIKVSNNWQ 973
                  +NW+
Sbjct: 304 VAEAGHGDNWE 314


>gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672]
          Length = 791

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/410 (41%), Positives = 256/410 (62%), Gaps = 8/410 (1%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +Y +++  +I ++S+ME TGI ++   LK+   +I + L + ++ I ++ GE+ NL+
Sbjct: 382 LWELYNKVEHKIIHILSEMEQTGILLNSKQLKETDEKIKELLNNEKKAIDEMLGEEINLN 441

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ---INCGDNPIIKNILEWRQLSKIK 681
           SPKQL  +LF KLK     K KTG + T    L     +N     ++K+IL++R+ SK+ 
Sbjct: 442 SPKQLSFVLFEKLKMVPFKKNKTG-YSTDEDSLRNMIFLNPSYENLLKSILKYREFSKLI 500

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY   L ++I++ T R+HT +    T TGRL+S+ PNLQNIP K +LG +IR AF+S  
Sbjct: 501 STYTSKLSDYIDRSTGRIHTQFKQTGTATGRLSSVNPNLQNIPQKGELGSEIRSAFVSKE 560

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               +S DYSQIELRILAHI+    L   FE   DIH M A ++FG+   +++  +RR A
Sbjct: 561 GYSFLSIDYSQIELRILAHISDDENLKIAFEQDFDIHTMTAMKVFGLLESEITRDIRRIA 620

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF IIYG+SP+ L+  + IP+SEA  +IK+YF  +P + +Y+++       +GYV T
Sbjct: 621 KAVNFGIIYGLSPYGLSRDVGIPQSEAKIFIKKYFETYPNVKKYMKEIVKKAENDGYVTT 680

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           I  R     +I S  ++I+   ER AIN+PIQGSAADI + AMI   K L+  ++  K++
Sbjct: 681 ILNRPRFIPDIKSANNTIKQRAERIAINSPIQGSAADIIKLAMIKSDKYLKRMQIDGKLI 740

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           LQ+HDELVFE+ ++ I   S+ I   ME    P   L+VPLKVN+ +S N
Sbjct: 741 LQVHDELVFEINDKYIDKTSKDIKVIMEN-IYP---LKVPLKVNLGISKN 786



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/244 (39%), Positives = 143/244 (58%), Gaps = 13/244 (5%)

Query: 9   LVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++DG S  Y+ FY TP L  S+K   +P + I  F N L  +    + +   +   V+FD
Sbjct: 4   IIDGHSLAYKIFYKTPPLYNSKK---VPTSMIHSFLNTLLSI----KDKLNPNRMIVVFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E++ +YKANR K PE L+ Q+  ++       I     +GFEADD+I T + 
Sbjct: 57  SKGDTFRHELFIEYKANRLKAPEDLIVQVEYLKKIIPLLDIELYAKEGFEADDLIYTLSK 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           I + +   V I++ DKDL Q+V     ++D   +E +D + + +K+GI PE++V   ALT
Sbjct: 117 ITDDQ---VMIVTKDKDLAQIVDERVKIFDYQTDETVDRKKIHEKFGIYPEQIVDFLALT 173

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DN+PG+ GIG KTA LLL E+G L+NI  N  +IK    RE + +  E A LS+KL
Sbjct: 174 GDSSDNVPGVKGIGEKTAVLLLNEFGTLDNIYSNLDKIKP-SYREKLEKGREIAYLSKKL 232

Query: 247 VMLR 250
           V L+
Sbjct: 233 VTLK 236


>gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614]
 gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614]
          Length = 889

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/514 (33%), Positives = 287/514 (55%), Gaps = 11/514 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K   L L  +G+ + G + D  L +Y+    + S+D+A +  ++L    K+   
Sbjct: 381 KVLHDAKGPMLALAAWGLPLAGLDRDTALSAYLARPDQRSYDLADLTVRYLKRELKQG-G 439

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +    + +D + D    E  + ++  +L L   L  +L       +   ++ P++D++++
Sbjct: 440 ADDGQLSLDGLDDRNAGEIEMLHARAVLDLAAALDDELEERGGTRLLNDIELPLVDLLAK 499

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME TGI +D D L+ + +  +  +    E  + + G++ NL SPKQL  +LF +L  P  
Sbjct: 500 MEQTGIAVDTDHLEALESHFAAEVRDAAEQAFGVIGKEINLGSPKQLQAVLFDELGMPKT 559

Query: 643 AKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TKTG + T A  L+ +    ++P + ++L  R +S+++ T    L         R+HT
Sbjct: 560 KRTKTG-YTTDADALQALYVKTEHPFLLHLLRHRDVSRLRQTIEGLLKTVAGD--GRIHT 616

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S EPNLQNIPI+T+ G++IR  F+  P  + L++ADYSQIE+RI+AH
Sbjct: 617 TFNQTIAATGRLSSTEPNLQNIPIRTEEGRRIREGFVVGPGYESLMTADYSQIEMRIMAH 676

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F++  D H + AA +F V  + V+ +MR   K +N+ + YG+S F L  Q
Sbjct: 677 LSEDDLLIEAFKSGRDFHSITAARVFDVPADDVTVEMRAKIKAMNYGLAYGLSAFGLGQQ 736

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I  SEA   +  YF  F GI +Y+       R+ G+ ETI+GRR +  ++ S     R
Sbjct: 737 LGIEPSEARGLMDEYFQTFGGIRDYLGGVVEEARKAGFTETIWGRRRYLPDLTSDNRQRR 796

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
            + ER A+NAPIQGSAAD+ + AM++V +++    LA++MLLQ+HDELVFEV   E    
Sbjct: 797 EMAERMALNAPIQGSAADLIKIAMLNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQEPL 856

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++   M  A     +L VPL V++    +W E
Sbjct: 857 EVLVREQMGAAA----DLAVPLDVSVGFGRSWHE 886



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 149/294 (50%), Gaps = 17/294 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P+ +     G   NA+ GF +ML  +L++ +     +H  V F
Sbjct: 4   LLLLDGHSLAYRAFFALPVENFSTTTGQHTNAVYGFTSMLINVLRDEQP----THVGVAF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY- 124
           D    TFR E Y DYKA R K P     QLPL+     A  IP ++  G+EADDIIAT  
Sbjct: 60  DVSRQTFRLEEYADYKAKRNKTPTEFSSQLPLIEEVLNALRIPFLKKDGYEADDIIATLV 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY------DTVKEEKIDIEHVIKKWGIPPE 177
           T   E     V I++ D+D +QLV+  +T LY      D  +     +E    K+G+PP 
Sbjct: 120 TRALEDPEMEVLILTGDRDSLQLVTDRSTVLYPMRGVSDLARMTPAAVE---AKYGVPPA 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +   L A+ G++ DN+PG+PG+G   AA  + ++  L+N++  A  I  KK         
Sbjct: 177 RYPELAAIVGETSDNLPGVPGVGQGYAAKWINQFDGLDNVIARADEITGKKGEALRAHLG 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           +  R +R L  L  D+ +    E L ++  +   + +    LEF  L +R+  T
Sbjct: 237 DVIR-NRHLNALVCDLELDRTPEQLAVQPWDRHEVHTLFDGLEFRVLRDRLFET 289


>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
 gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
          Length = 893

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 189/534 (35%), Positives = 294/534 (55%), Gaps = 15/534 (2%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503
           LT+E  + L  +  +E   K  H++K   L L  +G+ +RG   D  + +Y+   G+ S 
Sbjct: 368 LTQEDEAALAAWLADETKPKAAHDVKGPLLALWEHGLDLRGLTCDTAIAAYLAMPGQRSF 427

Query: 504 DIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            I  +  ++L+   R E     ++S+  D +     ++ A++ +  + +L   L   L  
Sbjct: 428 PIEELVLRYLNRELRYETPADGQASL-FDDVEAGMARDLALK-AQAVRELADALERHLAA 485

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
                +   ++ P+  V+++ME TGI  D+     + AE S       E  + L GE+FN
Sbjct: 486 RGGTRLMTEVELPLTRVLAEMEHTGIAADRQYFATLEAEFSAAAKQAVEAAHALVGEQFN 545

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIK 681
           L SPKQL +ILF KL  P   K KTG + T A  L  +    DN +   +L  R  +K++
Sbjct: 546 LGSPKQLQEILFVKLGLPKTKKIKTG-YTTDADALAWLATQTDNELPAILLRHRDQTKLR 604

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SP 740
           +T  + L   I     R+HT ++     TGRL+S +PNLQNIPI+T  G++IR+ FI   
Sbjct: 605 AT-VEGLIKEIAD-DGRIHTTFNQIVAATGRLSSEKPNLQNIPIRTAEGRRIRKGFIVGK 662

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
             + L++ADYSQIELRI+AH++    +   F +  D H+  AA +FG+  ++V+P++R  
Sbjct: 663 GYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQATAARVFGLPPDQVTPELRAR 722

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K +N+ + YG+S F LA QL IP +EA    + YF  F G+ EY+ +  +  R++GY E
Sbjct: 723 IKAMNYGLAYGLSDFGLAGQLNIPVAEARALKEEYFEEFAGVREYLNRVVDQARKDGYTE 782

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           TI GRR +  ++ S     R + ER A+NAPIQGSAADI + AM+ V K++E  +  ++M
Sbjct: 783 TILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLKVRKAMEGMR--SRM 840

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQ+HDELVFEV   E+     ++   M  A      LRVPL V+I     W++
Sbjct: 841 LLQVHDELVFEVAPGELDDLIALVREHMGGA----YPLRVPLDVSIGTGPTWED 890



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/263 (37%), Positives = 140/263 (53%), Gaps = 14/263 (5%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG S  YRAFYA     L++   DG    A+ GF +ML  +L++ R     SH AV
Sbjct: 13  LLLLDGHSLAYRAFYALRDANLMT--SDGQHTEAVYGFTSMLTNVLRDERP----SHIAV 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKANR + PE    Q+ L+        IP +   G+EADD+IAT
Sbjct: 67  CFDRGGPTFRHEAYDAYKANRVEAPEDFHGQMELIYELLDVLRIPRLSAPGYEADDVIAT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A   G  V I++ D+D +QLV     +  T +      +   E V +K+G+ P + 
Sbjct: 127 LATRAAASGLDVLIVTGDRDALQLVDDKITVLMTRRGISDMTRFTPEAVEEKYGLRPAQY 186

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD  DN+PGIPG+G KTAA  ++E+G+L+ ++     +K K   E + E+   
Sbjct: 187 PDFAALRGDPSDNLPGIPGVGEKTAARWIKEFGSLDELVRRVDEVKGKT-GERLREHLAQ 245

Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262
              +R L  LR DVPI + ++ L
Sbjct: 246 VIHNRMLTELRRDVPIDVAVDDL 268


>gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
 gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
          Length = 1040

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 306/568 (53%), Gaps = 47/568 (8%)

Query: 443  NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS 501
            +TL  E  + L+ FF  E+   + +N K  +  L  YG  + G  +D+ L+ Y+ D   S
Sbjct: 479  STLRPESENVLRDFFAAENRTVVVYNAKALRHALRAYGWELSGTVQDVNLLDYLADPDAS 538

Query: 502  SHDIASIAQKWLSYTRKE----------------------------------ILKSRKSS 527
                A++ ++ L ++  E                                    K     
Sbjct: 539  RLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAVTASTGSKDISGG 598

Query: 528  IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            IP+  + ++ V +     S  +L +  +L  ++   ++  + + ++ P+  ++ +ME TG
Sbjct: 599  IPLPSLPETLVNQAKYALS--LLDMLPILTEQVKYRRVGSLLD-MELPLSRLLERMEDTG 655

Query: 588  IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            I +D+ LL++   E+S  +   E   ++  G + NLSSPKQL D+LF +L  P   KTKT
Sbjct: 656  IAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREVNLSSPKQLQDVLFNQLGLPPTRKTKT 715

Query: 648  GQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G + T A+ LE++   + +P ++ +L +R  SK+     + L + I     R+HT +   
Sbjct: 716  G-YTTDAKALEELALYNPHPFLQALLYFRDRSKLLQVVRN-LGDRIAS-DGRIHTTFGQT 772

Query: 707  STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
               TGRL+SL+PNLQNIP +TD G +IR  FI+  P   L++ADYSQIE+RI+AH++   
Sbjct: 773  VAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDE 832

Query: 766  PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
             L   F++  D+HR VAA +FGV  E V+   R H K  ++ + YG+S F LA QLRI +
Sbjct: 833  GLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQ 892

Query: 826  SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             EA   ++ YF RF  + +Y+E   +  R+ GY ET++GRR +   + +    +     R
Sbjct: 893  GEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARR 952

Query: 886  AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AA+NAPIQGSAAD+ ++AM+ V  ++    L +++LLQIHDELVFEV   E+    +++ 
Sbjct: 953  AALNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVT 1012

Query: 946  HSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +M       + LRVPL+V++ V  NW+
Sbjct: 1013 EAMTSV----VELRVPLEVSVGVGANWR 1036



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 151/283 (53%), Gaps = 10/283 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFY+ P  + R   G+  NA+ GF +ML  +L+  +     +H    F
Sbjct: 6   LLVLDGHSLAFRAFYSRPPENFRTTTGVYTNAVHGFMSMLLAMLRREKP----THIGAAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR +IYPDYK  R + P   L Q+  ++    A GI  + ++  EADDI+AT  
Sbjct: 62  DLSRHSFRTDIYPDYKGGRAETPPEFLGQIENIQRLLDALGIKWLTMENVEADDILATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
              + +G  V + S D+D  QL+   TT LY   +  +  ++  + V  K+G+ P +   
Sbjct: 122 TQGKAQGMQVLVSSGDRDTFQLIDESTTVLYPGHNAAQTTRMTPQAVKDKYGVWPAQYPE 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL G+  DN+PG+P +G K+AA  + +YG LE IL +   +K  KR EN+  + +   
Sbjct: 182 VAALVGEKADNLPGVPLVGEKSAAAWINQYGGLEGILAHRGELK-GKRGENLRAHVDDVL 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +R+L  LRTD+ + + L+ L     +   + +    LEF ++
Sbjct: 241 RNRELNRLRTDLHLPLQLDDLRWRGMDVSAVDAVCAELEFKEM 283


>gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1]
 gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1]
          Length = 1040

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 305/568 (53%), Gaps = 47/568 (8%)

Query: 443  NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS 501
            +TL  E  + L+ FF  E+   + +N K  +  L  YG  + G   D+ L+ Y+ D   S
Sbjct: 479  STLRPESENVLRDFFAAENRTVVVYNAKALRHALRAYGWELSGTVRDVNLLDYLADPDAS 538

Query: 502  SHDIASIAQKWLSYTRKE----------------------------------ILKSRKSS 527
                A++ ++ L ++  E                                    K     
Sbjct: 539  RLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAVAASTGSKDISGG 598

Query: 528  IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            IP+  + ++ V +     S  +L +  +L  ++   ++  + + ++ P+  ++ +ME TG
Sbjct: 599  IPLPSLPETLVNQAKYALS--LLDMLPILTEQVEYRRVGSLLD-MELPLSRLLERMEDTG 655

Query: 588  IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            I +D+ LL++   E+S  +   E   ++  G + NLSSPKQL D+LF +L  P   KTKT
Sbjct: 656  IAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREVNLSSPKQLQDVLFNQLGLPPTRKTKT 715

Query: 648  GQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G + T A+ LE++   + +P ++ +L +R  SK+     + L + I     R+HT +   
Sbjct: 716  G-YTTDAKALEELALYNPHPFLQALLYFRDRSKLLQVVRN-LGDRIAS-DGRIHTTFGQT 772

Query: 707  STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
               TGRL+SL+PNLQNIP +TD G +IR  FI+  P   L++ADYSQIE+RI+AH++   
Sbjct: 773  VAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDE 832

Query: 766  PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
             L   F++  D+HR VAA +FGV  E V+   R H K  ++ + YG+S F LA QLRI +
Sbjct: 833  GLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQ 892

Query: 826  SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             EA   ++ YF RF  + +Y+E   +  R+ GY ET++GRR +   + +    +     R
Sbjct: 893  GEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARR 952

Query: 886  AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AA+NAPIQGSAAD+ ++AM+ V  ++    L +++LLQIHDELVFEV   E+    +++ 
Sbjct: 953  AALNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVT 1012

Query: 946  HSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +M       + LRVPL+V++ V  NW+
Sbjct: 1013 EAMTSV----VELRVPLEVSVGVGANWR 1036



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 151/283 (53%), Gaps = 10/283 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFY+ P  + R   G+  NA+ GF +ML  +L+  +     +H    F
Sbjct: 6   LLVLDGHSLAFRAFYSRPPENFRTTTGVYTNAVHGFMSMLLAMLRREKP----THIGAAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR +IYPDYK  R + P   L Q+  ++    A GI  + ++  EADDI+AT  
Sbjct: 62  DLSRHSFRTDIYPDYKGGRAETPPEFLGQIENIQRLLDALGIKWLTMENVEADDILATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
              + +G  V + S D+D  QL+   TT LY   +  +  ++  + V  K+G+ P +   
Sbjct: 122 TQGKAQGMQVLVSSGDRDTFQLIDESTTVLYPGHNAAQTTRMTPQAVKDKYGVWPAQYPE 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL G+  DN+PG+P +G K+AA  + +YG LE IL +   +K  KR EN+  + +   
Sbjct: 182 VAALVGEKADNLPGVPLVGEKSAAAWINQYGGLEGILAHRGELK-GKRGENLRAHVDDVL 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +R+L  LRTD+ + + L+ L     +   + +    LEF ++
Sbjct: 241 RNRELNRLRTDLHLPLQLDDLRWRGMDVSAVDAVCAELEFKEM 283


>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
 gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
          Length = 1015

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/486 (33%), Positives = 268/486 (55%), Gaps = 26/486 (5%)

Query: 488  DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            D+ L +Y+LD     +    +A +W                         + + + +N  
Sbjct: 551  DLGLAAYLLDPEERDYGWPRLAARW-----------------------GDMLDRSTDNPG 587

Query: 548  VI-LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            ++ L++   +  +L    L  +   L+ P++ V++ ME  GI +D+        E+   L
Sbjct: 588  LLALEMAQGMAGRLAGASLDTLMRTLELPLVPVLADMEEAGIAVDRTAFAAFLDEVQHEL 647

Query: 607  LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
              + + +Y  +G +FN+ S +QLG++LF  L  P+  KT+ GQ  T+   LE+++ G +P
Sbjct: 648  DRITQEVYKAAGGQFNIRSAQQLGELLFGTLGLPTVGKTRGGQATTSQDALEKLS-GRHP 706

Query: 667  IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            ++  IL++R+L K++STY + LP  ++    R+H+ ++  +T TGRL+S  PNLQNIP +
Sbjct: 707  VVDLILDFRKLEKLRSTYLEPLPKLVDD-AGRIHSTFNQLATATGRLSSSNPNLQNIPAR 765

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
             DLG+++R  F +     L+SADYSQIELR+LAH+++   L   F    DIHR  A  ++
Sbjct: 766  GDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLY 825

Query: 787  GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
                E V+P  RR+AKTINF +IYG+ P +L  +LRI  +EA  +I+RYF R   +  + 
Sbjct: 826  DTAPEDVTPDQRRNAKTINFGLIYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFY 885

Query: 847  EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
            +  +   R+ G+V T+ GRR    E++S  + +R+   R AIN  IQGSAADI + AM++
Sbjct: 886  DNVEAAAREQGHVTTLAGRRRLLPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLA 945

Query: 907  VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
             H     H L  +++LQ+HDEL+ EVPE     A + +   M +     + L VPL V+ 
Sbjct: 946  AHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDW 1005

Query: 967  KVSNNW 972
                +W
Sbjct: 1006 GAGKDW 1011



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 151/290 (52%), Gaps = 19/290 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS+FI+R FYA   + R  DG P NA+     +L +LL    +E    HFA + D
Sbjct: 14  LWLMDGSAFIFRGFYAFQNMQRS-DGFPTNALFIVTRILLRLL----REEKPRHFAFVLD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT- 125
               TFR++++P YKA R   PE L+ QL  +R    A G+P     G EADD IA+   
Sbjct: 69  GKGPTFRHDLFPLYKAQRAATPEPLVQQLEPIRRMVTALGLPLEVSDGCEADDCIASLAA 128

Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVCL 182
            Y  E+    V II  DKDL Q + P   L+D   KEEK+  +     + G+ P +   +
Sbjct: 129 RYRDERP---VVIIGADKDLKQCLHPNVVLWDPGAKEEKLTTLASFTAETGLTPAQWPDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAET 239
           QA+ GD+ DNIPGIPG+G KTA+ +  ++  LE+I     R+    QKK  +++    + 
Sbjct: 186 QAVIGDTSDNIPGIPGVGPKTASKIFADFPTLEDIRDGFDRLPPNLQKKFEQHL----DA 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
             L R+L  L  D    +  E L ++  +     +FL+  E   L   +A
Sbjct: 242 MFLYRQLTTLAIDRCADLTPERLSVQPLDARTASTFLQEFELRALSRELA 291


>gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1]
 gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1]
          Length = 908

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/536 (33%), Positives = 300/536 (55%), Gaps = 34/536 (6%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L  +  + H  K  H  K     L   G ++ G   D  L +Y++  G+ S  +  ++  
Sbjct: 386 LASWLADPHVPKALHEAKLAIHDLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLS-- 443

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            L Y ++E+         +  + DS  V + A++         LLLR   +V+    + E
Sbjct: 444 -LRYLKRELRADNPEQQQLSLLDDSDGVDDQAVQT--------LLLRASAVVDLADALDE 494

Query: 571 RLDK------------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
            L +            P+  V++++E  GI +D ++L  + +E +  +    E  Y + G
Sbjct: 495 ELSRIDSSALLGNMELPVQRVLAELETAGIAVDLEMLSGLQSEFADQIRDAAEAAYAVIG 554

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQL 677
           ++ NL SPKQL  +LF +L+ P   +TKTG + T A  L+ + +   +P ++++L  R  
Sbjct: 555 KQINLGSPKQLQVVLFDELEMPKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDA 613

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           +++K T  D L N +     R+HT ++     TGRL+S EPNLQNIPI+T+ G++IR AF
Sbjct: 614 TRLKVT-VDGLLNAVAS-DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAF 671

Query: 738 I-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           +      +L++ADYSQIE+RI+AH+++   L + F    D+H  VA+  F V I++V+ +
Sbjct: 672 VVGDGYGELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAE 731

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           +RR  K +++ + YG+S + L+ QL+I   EA + +++YF RF G+ +Y+    +  R++
Sbjct: 732 LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKD 791

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GY  T+FGRR +  E++S    +R   ERAA+NAPIQGSAADI + AMI+V ++++D  L
Sbjct: 792 GYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKDAGL 851

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++ LLQ+HDEL+FEV + E  T   ++   M  A      L VPL+V++    +W
Sbjct: 852 KSRTLLQVHDELLFEVADGERDTLDALVREHMGSAY----ALDVPLEVSVGFGRSW 903



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 155/290 (53%), Gaps = 10/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  L+++ +     SH A  F
Sbjct: 22  LMLLDGNSLAFRAFYALPAENFKTQGGLTTNAVYGFTAMLINLIRDEQP----SHIAAAF 77

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E YP+YK  R   P+    Q+ + +    A GI  +   GFEADDIIAT  
Sbjct: 78  DVSRQTFRKEKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEAGFEADDIIATLA 137

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EG  V +++ D+D +QLVS   T LY    V E  +   E V +K+G+ P +   
Sbjct: 138 TQAEGEGHRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVQEKYGLTPAQYPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA   + EYG+L+ ++ N  ++K K   + +  +  +  
Sbjct: 198 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQGLVDNVDKVKGKV-GDALRAHLSSVV 256

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           L+R+L  L  DVP+    + L ++  +   +      LEF  L +R+  T
Sbjct: 257 LNRELTELVKDVPLAQTPDTLRMQPWDRDHIHRLFDDLEFRVLRDRLFDT 306


>gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1040

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 306/568 (53%), Gaps = 47/568 (8%)

Query: 443  NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS 501
            +TL  E  + L+ FF  E+   + +N K  +  L  YG  + G  +D+ L+ Y+ D   S
Sbjct: 479  STLRPESENVLRDFFAAENRTVVVYNAKALRHALRAYGWELSGTVQDVNLLDYLADPDAS 538

Query: 502  SHDIASIAQKWLSYTRKE----------------------------------ILKSRKSS 527
                A++ ++ L ++  E                                    K     
Sbjct: 539  RLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAVTASTGSKDISGG 598

Query: 528  IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            IP+  + ++ V +     S  +L +  +L  ++   ++  + + ++ P+  ++ +ME TG
Sbjct: 599  IPLPSLPETLVNQAKYALS--LLDMLPILTEQVKYRRVGSLLD-MELPLSRLLERMEDTG 655

Query: 588  IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            I +D+ LL++   E+S  +   E   ++  G + NLSSPKQL D+LF +L  P   KTKT
Sbjct: 656  IAVDEGLLQRFDQELSSEVKRTETAAFEAIGREVNLSSPKQLQDVLFNQLGLPPTRKTKT 715

Query: 648  GQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G + T A+ LE++   + +P ++ +L +R  SK+     + L + I     R+HT +   
Sbjct: 716  G-YTTDAKALEELALYNPHPFLQALLYFRDRSKLLQIVRN-LGDRIAP-DGRIHTTFGQT 772

Query: 707  STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
               TGRL+SL+PNLQNIP +TD G +IR  FI+  P   L++ADYSQIE+RI+AH++   
Sbjct: 773  VAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDE 832

Query: 766  PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
             L   F++  D+HR VAA +FGV  E V+   R H K  ++ + YG+S F LA QLRI +
Sbjct: 833  GLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQ 892

Query: 826  SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             EA   ++ YF RF  + +Y+E   +  R+ GY ET++GRR +   + +    +     R
Sbjct: 893  GEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARR 952

Query: 886  AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AA+NAPIQGSAAD+ ++AM+ V  ++    L +++LLQIHDELVFEV   E+    +++ 
Sbjct: 953  AALNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVT 1012

Query: 946  HSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +M       + LRVPL+V++ V  NW+
Sbjct: 1013 EAMTSV----VELRVPLEVSVGVGANWR 1036



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 151/283 (53%), Gaps = 10/283 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFY+ P  + R   G+  NA+ GF +ML  +L+  +     +H    F
Sbjct: 6   LLVLDGHSLAFRAFYSRPPENFRTTTGVYTNAVHGFMSMLLAMLRREKP----THIGAAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR +IYPDYK  R + P   L Q+  ++    A GI  + ++  EADDI+AT  
Sbjct: 62  DLSRHSFRTDIYPDYKGGRAETPPEFLGQIENIQRLLDALGIKWLTMENVEADDILATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
              + +G  V + S D+D  QL+   TT LY   +  +  ++  + V  K+G+ P +   
Sbjct: 122 TQGKAQGMQVLVSSGDRDTFQLIDESTTVLYPGHNAAQTTRMTPQAVKDKYGVWPAQYPE 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL G+  DN+PG+P +G K+AA  + +YG LE IL +   +K  KR EN+  + +   
Sbjct: 182 VAALVGEKADNLPGVPLVGEKSAAAWINQYGGLEGILAHRGELK-GKRGENLRAHVDDVL 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +R+L  LRTD+ + + L+ L     +   + +    LEF ++
Sbjct: 241 RNRELNRLRTDLHLPLQLDDLRWRGMDVSAVDAVCAELEFKEM 283


>gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
 gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
          Length = 909

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 176/519 (33%), Positives = 296/519 (57%), Gaps = 37/519 (7%)

Query: 473 KLVLHRY---GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           KL +H     G ++ G   D  L +Y++  G+ S  +  ++   L Y ++E+        
Sbjct: 404 KLAMHDLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLS---LRYLKRELRADNPEQQ 460

Query: 529 PIDKISDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK------------P 575
            +  + DS  V + A++         LLLR   +V+    + E L +            P
Sbjct: 461 QLSLLDDSDAVDDQAVQT--------LLLRAGAVVDLADALDEELARIDSSALLGSMELP 512

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  V++Q+E  GI +D  +L ++ +E +  +    E  Y + G++ NL SPKQL  +LF 
Sbjct: 513 VQRVLAQLETVGIAVDLAMLSELQSEFAGQIRDAAEAAYAVIGKQINLGSPKQLQVVLFD 572

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           +L+ P   +TKTG + T A  L+ + +   +P ++++L  R  +++K T  D L N +  
Sbjct: 573 ELEMPKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAA 630

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
              R+HT ++     TGRL+S EPNLQNIPI+T+ G++IR  F+       L++ADYSQI
Sbjct: 631 -DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDGFVVGEGYADLMTADYSQI 689

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           E+RI+AH++K   L + F    D+H  VA+  F V +++V+P++RR  K +++ + YG+S
Sbjct: 690 EMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYGLAYGLS 749

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+ QL+I   EA + +++YF RF G+ +Y+    +  R++GY  T+FGRR +  E++
Sbjct: 750 AYGLSQQLKISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRYLPELD 809

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S    +R   ERAA+NAPIQGSAADI + AMI+V +++++  L+++MLLQ+HDEL+FEV 
Sbjct: 810 SSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKEAGLSSRMLLQVHDELLFEVA 869

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + E      ++   M  A      L VPL+V++    +W
Sbjct: 870 DGERDALDALVREHMGSAY----RLDVPLEVSVGYGRSW 904



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 157/290 (54%), Gaps = 10/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL++ +     +H A  F
Sbjct: 23  LMLLDGNSLAFRAFYALPAENFKTKSGLTTNAVYGFTAMLINLLRDEQP----THIAAAF 78

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YK  R   P+    Q+ + +    A GI  +   GFEADDIIAT  
Sbjct: 79  DVSRQTFRKDKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEPGFEADDIIATLA 138

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EG  V +++ D+D +QLVS   T LY    V E  +   E V +K+G+ P +   
Sbjct: 139 TQAENEGHRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVQEKYGLTPAQYPD 198

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA   + EYG+L++++ N  ++K K   + +  +  +  
Sbjct: 199 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQSLVDNVDKVKGKV-GDALRAHLSSVV 257

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           L+R+L  L  DVP+    + L ++  +  ++      LEF  L +R+  T
Sbjct: 258 LNRELTDLVKDVPLAHTPDTLRMQPWDRDQIHRLFDDLEFRVLRDRLFDT 307


>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
          Length = 1015

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/486 (33%), Positives = 268/486 (55%), Gaps = 26/486 (5%)

Query: 488  DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            D+ L +Y+LD     +    +A +W                         + + + +N  
Sbjct: 551  DLGLAAYLLDPEERDYGWPRLAARW-----------------------GDMLDRSTDNPG 587

Query: 548  VI-LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            ++ L++   +  +L    L  +   L+ P++ V++ ME  GI +D+        E+   L
Sbjct: 588  LLALEMAQGMAGRLAGASLDTLMRTLELPLVPVLADMEEAGIAVDRTAFAAFLDEVQHEL 647

Query: 607  LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
              + + +Y  +G +FN+ S +QLG++LF  L  P+  KT+ GQ  T+   LE+++ G +P
Sbjct: 648  DRITQEVYKAAGGQFNIRSAQQLGELLFGTLGLPTVGKTRGGQATTSQDALEKLS-GRHP 706

Query: 667  IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            ++  IL++R+L K++STY + LP  ++    R+H+ ++  +T TGRL+S  PNLQNIP +
Sbjct: 707  VVDLILDFRKLEKLRSTYLEPLPKLVDA-AGRIHSTFNQLATATGRLSSSNPNLQNIPAR 765

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
             DLG+++R  F +     L+SADYSQIELR+LAH+++   L   F    DIHR  A  ++
Sbjct: 766  GDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLY 825

Query: 787  GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
                E V+P  RR+AKTINF +IYG+ P +L  +LRI  +EA  +I+RYF R   +  + 
Sbjct: 826  DTAPEDVTPDQRRNAKTINFGLIYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFY 885

Query: 847  EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
            +  +   R+ G+V T+ GRR    E++S  + +R+   R AIN  IQGSAADI + AM++
Sbjct: 886  DNVEAAAREQGHVTTLAGRRRLLPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLA 945

Query: 907  VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
             H     H L  +++LQ+HDEL+ EVPE     A + +   M +     + L VPL V+ 
Sbjct: 946  AHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDW 1005

Query: 967  KVSNNW 972
                +W
Sbjct: 1006 GAGKDW 1011



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 151/290 (52%), Gaps = 19/290 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS+FI+R FYA   + R  DG P NA+     +L +LL    +E    HFA + D
Sbjct: 14  LWLMDGSAFIFRGFYAFQNMQRS-DGFPTNALFIVTRILLRLL----REEKPRHFAFVLD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT- 125
               TFR++++P YKA R   PE L+ QL  +R    A G+P     G EADD IA+   
Sbjct: 69  GKGPTFRHDLFPLYKAQRAATPEPLVQQLEPIRRMVTALGLPLEVSDGCEADDCIASLAA 128

Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVCL 182
            Y  E+    V II  DKDL Q + P   L+D   KEEK+  +     + G+ P +   +
Sbjct: 129 RYRDERP---VVIIGADKDLKQCLHPNVVLWDPGAKEEKLTTLASFTAETGLTPAQWPDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAET 239
           QA+ GD+ DNIPGIPG+G KTA+ +  ++  LE+I     R+    QKK  +++    + 
Sbjct: 186 QAVIGDTSDNIPGIPGVGPKTASKIFADFPTLEDIRDGFDRLPPNLQKKFEQHL----DA 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
             L R+L  L  D    +  E L ++  +     +FL+  E   L   +A
Sbjct: 242 MFLYRQLTTLAIDRCADLTPERLSVQPLDARTASTFLQEFELRALSRELA 291


>gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 838

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 186/513 (36%), Positives = 304/513 (59%), Gaps = 36/513 (7%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           LKI +N K     L   G+ +   + D+M+++Y+++  R  ++I  +    L YT K   
Sbjct: 355 LKIIYNAKEALKKLKNSGLKLSPPYFDLMIVAYLINPNRGKYNIDELI---LEYTGK--- 408

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNV-ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
                             E+A EN N  + +L+  L  +L  ++L ++Y  ++ P+I+V+
Sbjct: 409 ----------------FYENA-ENINFYMFELYEKLNKELKEKELENLYFDIEMPLIEVL 451

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             ME TGI+++ + L+ ++  IS  L  ++E IY ++G +FN++SPKQL ++L+ +L   
Sbjct: 452 FDMEETGIKVNIEKLETLTKHISMELDKIKEKIYTIAGTEFNINSPKQLAEVLYDRL--- 508

Query: 641 SGAKTKTGQWKTTAQDLEQIN--CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            G KT+    K  + ++E +      + +   ++ +R L+K+ + Y   L ++IN  T+R
Sbjct: 509 -GLKTRKRGKKARSTEMEVLEELAIQHELPHEVINYRTLNKLLTGYLIPLRDYINPETKR 567

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +HT +S     TGR+ S EPNLQNIP+K +  + +R  FI       +SADYSQIELR+L
Sbjct: 568 IHTKWSQTVAGTGRIVSSEPNLQNIPVKGEWAEFLREVFIPENGYMFLSADYSQIELRLL 627

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+++   L + F +  DIH   A+EIF +    V+ + RR AKT+NF I YGISPF L+
Sbjct: 628 AHMSEDPALIKAFLDGKDIHTATASEIFSIPENAVTDEHRRIAKTVNFGISYGISPFGLS 687

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             ++IP  +A + I+ YF R+P + ++IE+T +F ++NGYV T+FGR     EINSP   
Sbjct: 688 ESIKIPYEKAEELIELYFLRYPMVRKFIEETISFAQKNGYVRTLFGRIRPLPEINSPNQF 747

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R  +ER A+NA +QG+AADI + AMI ++  L+  KL  K++LQIHDE+V EV ++ I 
Sbjct: 748 LRMQSERMAVNARVQGTAADIIKIAMIRIYNRLKKEKLNAKIILQIHDEIVLEVEQKVIE 807

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
             S+I+ + M+       +L VPL+VN+   N+
Sbjct: 808 KVSEIVQNEMK-----DFSLSVPLEVNVFSGNS 835



 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 127/291 (43%), Positives = 180/291 (61%), Gaps = 10/291 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + ++LVDGS FIYRA++A   LS    G+P NAI GF  ML KLL    +E    +    
Sbjct: 2   HEIYLVDGSCFIYRAYHAIKGLSTSR-GIPTNAIYGFTRMLLKLL----REKNVKYILCA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  T R++IY +YK  RP+ P+ L  Q+  ++    A GI  IE+ G+EADDIIAT 
Sbjct: 57  FDSPHPTKRHKIYEEYKITRPETPKDLPVQIDYIKQIIDALGITRIEVPGYEADDIIATA 116

Query: 125 TYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
             +  +  FA     IIS DKD++QLVS    +YD + E  ID E+VIKK+G+PPEK+  
Sbjct: 117 VGVINQ--FAPLNFIIISIDKDMLQLVSDNVKIYDPINELIIDREYVIKKYGVPPEKLND 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+IDNIPG+ GIG KTAA L++ YG++ENIL N   IK  K  + I +  ++ +
Sbjct: 175 FMALVGDAIDNIPGVKGIGEKTAANLIKRYGSIENILKNLDIIKPLKVSDIIKKNIKSLQ 234

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           LS++LV+LR D PI I L+ L ++  +  +L+   + LEF  L+ ++   +
Sbjct: 235 LSKELVILRKDTPIEIKLDDLKIKQQDREKLVQIFRELEFNTLLKQIIKDF 285


>gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
 gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
          Length = 908

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 179/536 (33%), Positives = 300/536 (55%), Gaps = 34/536 (6%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L  +  + H  K  H  K     L   G ++ G   D  L +Y++  G+ S  +  ++  
Sbjct: 386 LASWLADPHVPKALHEAKLAIHDLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLS-- 443

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            L Y ++E+         +  + DS  V + A++         LLLR   +V+    + E
Sbjct: 444 -LRYLKRELRADNPEQQQLSLLDDSDGVDDQAVQT--------LLLRASAVVDLADALDE 494

Query: 571 RLDK------------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
            L +            P+  V++++E  GI +D ++L  + +E +  +    E  Y + G
Sbjct: 495 ELARIDSSALLGNMELPVQRVLAELETAGIAVDLEMLSGLQSEFADQIRDAAEAAYAVIG 554

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQL 677
           ++ NL SPKQL  +LF +L+ P   +TKTG + T A  L+ + +   +P ++++L  R  
Sbjct: 555 KQINLGSPKQLQVVLFDELEMPKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDA 613

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           +++K T  D L N +     R+HT ++     TGRL+S EPNLQNIPI+T+ G++IR AF
Sbjct: 614 TRLKVT-VDGLLNAVAS-DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAF 671

Query: 738 I-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           +      +L++ADYSQIE+RI+AH+++   L + F    D+H  VA+  F V I++V+ +
Sbjct: 672 VVGDGYGELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAE 731

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           +RR  K +++ + YG+S + L+ QL+I   EA + +++YF RF G+ +Y+    +  R++
Sbjct: 732 LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKD 791

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GY  T+FGRR +  E++S    +R   ERAA+NAPIQGSAADI + AMI+V ++++D  L
Sbjct: 792 GYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKDAGL 851

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++ LLQ+HDEL+FEV + E  T   ++   M  A      L VPL+V++    +W
Sbjct: 852 KSRTLLQVHDELLFEVADGERDTLDALVREHMGSAY----ALDVPLEVSVGFGRSW 903



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 155/290 (53%), Gaps = 10/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  L+++ +     SH A  F
Sbjct: 22  LMLLDGNSLAFRAFYALPAENFKTQGGLTTNAVYGFTAMLINLIRDEQP----SHIAAAF 77

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E YP+YK  R   P+    Q+ + +    A GI  +   GFEADDIIAT  
Sbjct: 78  DVSRQTFRKEKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEAGFEADDIIATLA 137

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EG  V +++ D+D +QLVS   T LY    V E  +   E V +K+G+ P +   
Sbjct: 138 TQAEGEGHRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVQEKYGLTPAQYPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA   + EYG+L+ ++ N  ++K K   + +  +  +  
Sbjct: 198 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQGLVDNVDKVKGKV-GDALRAHLSSVV 256

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           L+R+L  L  DVP+    + L ++  +   +      LEF  L +R+  T
Sbjct: 257 LNRELTELVKDVPLAQTPDTLRMQPWDRDHIHRLFDDLEFRVLRDRLFDT 306


>gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 856

 Score =  303 bits (777), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 173/418 (41%), Positives = 256/418 (61%), Gaps = 13/418 (3%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           E L  +  R+D P+  V+S+ME  GI++D D L +V  E+ + L  ++ +I   +G K N
Sbjct: 445 EALHGLMYRIDIPLSVVLSRMERKGIRLDLDHLWKVKQELERTLDDVKASIDMAAGYKVN 504

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQLSK 679
           L+SPKQ+G +LF  L  P   KTKTG + T    LE+++  D P   + K +L+ R+L+K
Sbjct: 505 LNSPKQVGWLLFDHLGLPVIKKTKTG-YSTDVTVLEELSRLDRPEALVAKLLLDHRELTK 563

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           + + +   L + I+ +T +VHT +   ST TGRL+S +PNLQN+P   D   K++ AF+ 
Sbjct: 564 MLTGFVQPLIDAIDPKTGKVHTTFEHTSTGTGRLSSRDPNLQNLPAYGDWAMKLKEAFV- 622

Query: 740 PPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            P ++    I+ADYSQIELR+LAHI+    L + FE   DIH   AA IFGV+ EKVSP+
Sbjct: 623 -PDRRDGIFIAADYSQIELRVLAHISGDKKLCEAFERGRDIHAETAAWIFGVDTEKVSPE 681

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           +RR AK INF ++YG++P+ LA++L I R EA   I RYF  FP + +YIEK+    R+ 
Sbjct: 682 LRRMAKMINFGLLYGMTPYGLASRLNIGREEAKTIIDRYFSAFPKVGDYIEKSYEEARKR 741

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GY  ++FGRR   +E+ +   +     +R AIN PIQ +AADIT+ AMI + ++L+   +
Sbjct: 742 GYTLSLFGRRRPLNEVTTVVGNSTAALKRVAINTPIQSTAADITKIAMIRLDEALQRENI 801

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ++LQIHD L+ E   ++    S I+  SME A    + L VPL+VN+K      E
Sbjct: 802 DAALILQIHDSLICECSAKDEEVVSGILKESMESA----VELSVPLEVNLKSGRTLAE 855



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/327 (33%), Positives = 172/327 (52%), Gaps = 35/327 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE  + LVDG +  +RAFYA P L+   DG+P NAI GF NML K++ +   + +     
Sbjct: 2   KEERILLVDGHALAFRAFYALPELN-APDGMPTNAILGFLNMLLKIINDENPDQVI---- 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR+E Y +YK  RP  PE    QL L++   +  G P IEI+G EADD IA
Sbjct: 57  VFFDAKGETFRHEAYKEYKEGRPPTPEEFKSQLLLIKEIMKYLGYPVIEIEGVEADDAIA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           +   I E +G A+ +++ DKD++QL+     +   +K     +  D +   +++G PP  
Sbjct: 117 SVVRILEGKGSAL-VLTADKDMLQLIRADVKVMRPIKGVSTFKVYDEKTFEEEFGFPPSS 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
                +L GD +DNIPGIPGIG K A+ L+Q+YG+LEN+  + + + Q      K +++ 
Sbjct: 176 FPDYLSLIGDKVDNIPGIPGIGSKRASALIQQYGSLENLYEHINELPQKIASSLKDKKDE 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + ++       R+L+ LR  + I+ P E     + N   LI   + L F ++  R+    
Sbjct: 236 LFQW-------RELIRLRDTLCIS-PDEFKGGGERNNEALIGIFQRLGFKQIPERLGLR- 286

Query: 293 DCDAANIEPVVLDINTTENKGIAIETE 319
                     V D+++ E +  A E E
Sbjct: 287 ----------VKDVDSRETRSKAGEGE 303


>gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 937

 Score =  303 bits (777), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 156/427 (36%), Positives = 255/427 (59%), Gaps = 17/427 (3%)

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY--- 614
           P+++      + + L+ P+  ++++ME+TGI +D D L  +  + +    + +E+ +   
Sbjct: 515 PQVLDRGAQRLLQELEIPLSRLLARMELTGIAVDVDALTGLREDFTAAADAAKESAWASV 574

Query: 615 --DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNI 671
             +  G + NL SPKQL ++LF +L  P   KTKTG + T    L+ +     +P ++N+
Sbjct: 575 AEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTG-YSTDVDSLQDLLEQTQHPFLENL 633

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           +  R  +K++ T    L         R+HT YS  +  TGRL+SL PNLQNIP++T+ G+
Sbjct: 634 MAHRDATKLRQTVEGLL--ETVAPDGRIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGR 691

Query: 732 KIRRAFISPPTKK----LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           +IR  F++         L+SADYSQIE+RI+AH+++   L Q F    D+H  V +++FG
Sbjct: 692 RIRGVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFG 751

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V+ ++V+ + R   K +++ + YG+S F L+ QL+I   EA   +K YF RF G+ +Y+ 
Sbjct: 752 VDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYFDRFGGVRDYLR 811

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                 RQ+GY  TI GRR +  +++S    +R++ ERAA+NAPIQGSAADI +RAM+ V
Sbjct: 812 DVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDV 871

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
              LE+H LA+++LLQ+HDEL+ EVP  E+  ++ ++   M +A      L VPL V++ 
Sbjct: 872 QAGLEEHGLASRLLLQVHDELILEVPAAELEQSTALLKERMGRAA----ELSVPLDVHVG 927

Query: 968 VSNNWQE 974
              +W +
Sbjct: 928 QGRSWHD 934



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 159/287 (55%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P  +   D G   NA+ GF  ML  +++  R     +H AV F
Sbjct: 13  LLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQRP----THVAVAF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y +YKA R + P     Q+ L     +A GIP +  +G+EADDI+AT +
Sbjct: 69  DLSGPTFRSEEYGEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTFEGYEADDIVATLS 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKI---DIEHVIKKWGIPPEKMVC 181
             AE+ G+   ++S D+D  QL+S  TT LY       I   D + V+ K+G+ P +   
Sbjct: 129 ARAEEAGWEAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAPAQYPE 188

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G++ DN+PG+PG+G   AA  L++YG+L+ +L +A  I  KK  E + E+ E  R
Sbjct: 189 LAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKK-GEALREHLEDVR 247

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +R+L  L  D+ + I LE + LE      +     AL+F ++  RV
Sbjct: 248 RNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERV 294


>gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46]
 gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46]
          Length = 881

 Score =  303 bits (777), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 189/575 (32%), Positives = 317/575 (55%), Gaps = 48/575 (8%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + I + D+K  TS   + + +DL   +++D+             L+++   +H  K+ H+
Sbjct: 339 LMIGSADEKGKTSG--QAVSLDLGELSAEDADA-----------LREWLAGDH-PKLVHD 384

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            K    VL  Y   + G   D  L +Y+L   + S+ + ++ Q+ L  T  +        
Sbjct: 385 SKSAMHVLWNYDFELVGVIHDTFLAAYLLRPSQRSYSLDNVVQRHLGQTLSQ-------- 436

Query: 528 IPIDKISDSQVQ--EHAIENSN---VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                 +D Q+   +   E+++    ++ L   L  +L    L  VY  L+ P+  V+ +
Sbjct: 437 ------ADGQMTLLDGPAEDASHVAAVIDLAERLAVELDEAGLYSVYADLEVPLAPVLGR 490

Query: 583 MEITGIQIDQDLLKQVSAEI---SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ME  GI +D D L+++  +    + +  S   N+ D    + NL SPKQL ++LF +L  
Sbjct: 491 MERAGIAVDVDALEELRKQAQAATDDAESAARNLVDKP--ELNLGSPKQLQEVLFDQLGM 548

Query: 640 PSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
           P   KTKTG + T A+++E +     +P +  +L++R+  K+KST  + L   +     R
Sbjct: 549 PKTKKTKTG-YSTAAKEIEGLAKVNPHPFLDYLLKFRESQKMKST-VEGLIKAVAD-DGR 605

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRI 757
           +HT ++     TGRL+S EPNLQNIP++T+ G++IR AF+      +LI+ADYSQIE+R+
Sbjct: 606 IHTTFNQTVAATGRLSSTEPNLQNIPVRTEFGRRIREAFVVGEGYAQLITADYSQIEMRV 665

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH+++   L + +    D+H  V +++FGV I++V+P++RR  K +++ + YG+S F L
Sbjct: 666 MAHLSQDPGLIEAYRQGEDLHNYVGSKVFGVGIDEVTPELRRRVKAMSYGLAYGLSAFGL 725

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A QL IP+ EA   ++ YF RF G+ +Y+ K     R++G+  T+F RR +  E+N+   
Sbjct: 726 AQQLDIPQREAKKLMEDYFERFGGVRDYLHKVVEQARKDGFTATMFDRRRYLPELNADNR 785

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             R+  ERAA+N+PIQGSAADI + AM+ V  +L    L +++LLQ+HDELV EV + E 
Sbjct: 786 IARDNAERAALNSPIQGSAADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVEVADGEE 845

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
               +++   M+ A      L VPL V+I    NW
Sbjct: 846 AAIKELLHREMDSAA----ELLVPLDVSIGAGVNW 876



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 156/299 (52%), Gaps = 11/299 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAF+A P+ +     G   NA+ GF +ML  +L     E   +H AV F
Sbjct: 5   LMLIDGHSMAFRAFFALPVDNFSTTGGQTTNAVYGFLSMLSNIL----SEEKPTHVAVAF 60

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNEI+P+YKA R K PE    Q+PL++   +  GI  +E   +EADDIIAT  
Sbjct: 61  DVARETFRNEIFPEYKAQREKTPEEFRGQVPLIQQVLKEMGIVTLEKDNYEADDIIATLA 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+ EGF   I++ D+D  QLV+ TT +   ++      +     + KK+G+ P +   
Sbjct: 121 TQAKPEGFETLIVTGDRDSFQLVNDTTTVLYPMRGVTTLHRFTPAAIEKKYGLTPTQYPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA   + +YG L N++ +A  I+  K  +N  E     +
Sbjct: 181 FAALRGDPSDNLPGIPGVGEKTATKWIVQYGTLANLIDHADEIR-GKVGDNFRERVANVQ 239

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAANI 299
           L+R +  +  D+P+      L L   +   +I F   LEF   L  RV      + A +
Sbjct: 240 LNRDITEMVKDLPLPYGPNELELRPADAQGIIDFFDRLEFGDNLRERVFRILSIEGAGV 298


>gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
 gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 937

 Score =  303 bits (777), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 156/427 (36%), Positives = 254/427 (59%), Gaps = 17/427 (3%)

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY--- 614
           P+++      + + L+ P+  ++++ME+ GI +D D L  +  + +    + +E+ +   
Sbjct: 515 PQVLDRGAQRLLQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASV 574

Query: 615 --DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNI 671
             +  G + NL SPKQL ++LF +L  P   KTKTG + T    L+ +     +P ++N+
Sbjct: 575 AEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTG-YSTDVDSLQDLLEQTRHPFLENL 633

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           +  R  +K++ T    L         R+HT YS  +  TGRL+SL PNLQNIP++T+ G+
Sbjct: 634 MAHRDATKLRQTVEGLL--ETVAPDDRIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGR 691

Query: 732 KIRRAFISPPTKK----LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           +IR  F++         L+SADYSQIE+RI+AH+++   L Q F    D+H  V +++FG
Sbjct: 692 RIREVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFG 751

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V+ ++V+ + R   K +++ + YG+S F L+ QL+I   EA   +K YF RF G+ +Y+ 
Sbjct: 752 VDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYFDRFGGVRDYLR 811

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                 RQ+GY  TI GRR +  +++S    +R++ ERAA+NAPIQGSAADI +RAM+ V
Sbjct: 812 DVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDV 871

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
              LE+H LA+++LLQ+HDEL+ EVP  E+  A+ ++   M +A      L VPL V++ 
Sbjct: 872 QAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRAA----ELSVPLDVHVG 927

Query: 968 VSNNWQE 974
              +W +
Sbjct: 928 RGRSWHD 934



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 160/289 (55%), Gaps = 10/289 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L ++DG S  +RAFYA P  +   D G   NA+ GF  ML  +++  R     +H AV
Sbjct: 11  QRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQRP----THVAV 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y +YKA R + P     Q+ L     +A GIP + ++G+EADDI+AT
Sbjct: 67  AFDLSGPTFRSEEYAEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDIVAT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKI---DIEHVIKKWGIPPEKM 179
            +  AE+ G+   ++S D+D  QL+S  TT LY       I   D + V+ K+G+ P + 
Sbjct: 127 LSARAEEAGWEAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAPAQY 186

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DN+PG+PG+G   AA  L++YG+L+ +L +A  I  KK  E + E+ E 
Sbjct: 187 PELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKK-GEALREHLED 245

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            R +R+L  L  D+ + I LE + LE      +     AL+F ++  RV
Sbjct: 246 VRRNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERV 294


>gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702]
          Length = 901

 Score =  303 bits (776), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 193/614 (31%), Positives = 322/614 (52%), Gaps = 54/614 (8%)

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD-----QKDDTSFKVETIF 428
           T  +  W+ K      A +K+     DA   +P+A+ ++ +      + D  +     + 
Sbjct: 322 TGKLATWLTK-----HAGWKVNRPAGDAAVHRPLAVTVTGVGTPAGGRADRIALLDPVVG 376

Query: 429 IDLSVH------TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            D ++H      T QD   + TL        + +  +    K  H+ K +   L+  G+ 
Sbjct: 377 EDGALHAVDIDLTDQDPADEATL--------RAWLADRGAPKWVHDAKAEWHKLNGSGLV 428

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + G E D  L +Y+L     + D+A + Q+ + +   EI      ++             
Sbjct: 429 LAGVEQDTALAAYLLRPDLRTGDLADVVQRHVGH---EITADAPGAV------------- 472

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +    +L   L P+L     + +Y  L+ P+  V+++ME TGI +D   L+ +S E
Sbjct: 473 ---CAQATAELVAALTPELAEIGAMELYLDLEVPLATVLAKMEATGISVDAASLRDLSDE 529

Query: 602 ISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
               + +       ++G+   NLSSPKQL  +LF  L+ P   KTKTG + T A +LE++
Sbjct: 530 YGVQIEAEIAEARTIAGDDTLNLSSPKQLQKVLFETLELPKTKKTKTG-YSTAAGELEKL 588

Query: 661 NCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                +P + +++  R+  K+KST  D L   +     R+HT ++     TGRL+S +PN
Sbjct: 589 AASHPHPFLGHLMAHREYQKMKSTI-DGLIEAVAD-DGRIHTTFNQRGAATGRLSSSDPN 646

Query: 720 LQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++T+ G++IR AF +      LI+ADYSQIE+R++AH+++   L + +    D+H
Sbjct: 647 LQNIPVRTEAGRRIRGAFRVGTGYATLITADYSQIEMRVMAHLSQDPGLIEAYRAGEDLH 706

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             V +++F V +E V+P++RR  K +++ ++YG+S F L+ QLRI   EA   +  YF R
Sbjct: 707 NYVGSKVFDVPVEHVTPELRRRVKAMSYGLVYGLSAFGLSQQLRISAGEAKQIMDNYFER 766

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+  Y+++     ++ GY ET++GRR +  E+NS          RAA+NAPIQG+AAD
Sbjct: 767 FGGVKRYLDEVVAHAKETGYTETLYGRRRYLPELNSSNRVAAEAAGRAALNAPIQGTAAD 826

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAM+ V        LA+++LLQ+HDELV EV + E    ++I+   M+ A     +L
Sbjct: 827 IIKRAMLRVDAEFTRRDLASRVLLQVHDELVVEVVDGEQDVVTEILREQMDGAA----DL 882

Query: 959 RVPLKVNIKVSNNW 972
           RVPL V+  V ++W
Sbjct: 883 RVPLDVSTGVGSDW 896



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 13/309 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  +     G   NA+ GF  ML  L++N       +H A  F
Sbjct: 15  LLLLDGHSLAFRAFYALPAQNFSTTGGQHTNAVYGFLGMLLGLVENEHP----THIATAF 70

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E +P+YKA RP  P     Q+ L++   QA G+  +  + +EADDIIAT  
Sbjct: 71  DLSGPTFRSETFPEYKAQRPSTPPEFHGQVELIQETLQALGVTTLTKEAYEADDIIATLA 130

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                 G  V I + D+D  QLV+    +  T+K     ++     V +K+G+ P +   
Sbjct: 131 TRGAAAGMRVLICTGDRDSFQLVTEDVTVLYTLKGVSELDRFTPARVEEKYGVTPTQYPD 190

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL GD+ DN+PG+PG+G KTA   +  YG+LE ++ +   I  K   +N+ ++     
Sbjct: 191 LAALRGDTSDNMPGVPGVGPKTAQKWITGYGSLEGVVEHKDEIGGKV-GQNLRDHLADVL 249

Query: 242 LSRKLV-MLRT-DVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAAN 298
           L+R +  M+R  D+     LE L     +    +   +AL+F T L NR   T+  +  +
Sbjct: 250 LARNITEMVRDLDLGEAGQLEALTPGTPDPTASLDMFEALQFGTTLRNRAFRTFGVEFED 309

Query: 299 IEPVVLDIN 307
            E   L ++
Sbjct: 310 GEAAALTMD 318


>gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 874

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 183/531 (34%), Positives = 303/531 (57%), Gaps = 30/531 (5%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
           S LK + E+E   K  H+ K    +L    I++RG   D  + +Y+L  G+ ++++  + 
Sbjct: 364 SALKVWVESED-PKYLHDAKTVFHMLKGRDITLRGIAHDTAIAAYLLRPGQRTYELHDVY 422

Query: 510 QKWLSYTRKEILKSRKSSIPIDKIS---DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           Q+ L          R+ ++  D++S   D+ +    ++++  +L+L   L  +L      
Sbjct: 423 QRHLQ---------RQLNLGGDQLSLLGDTSL----VDSAAAVLELAEELSAQLRGIDSY 469

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSS 625
            +Y  L+ P++ ++++ME  GI +D D+L+    + +  +  +EE    L  E   NLSS
Sbjct: 470 DLYADLELPLVSILAEMENAGIAVDVDVLEAQLKDFTAKVAQVEEEARQLVDEPSLNLSS 529

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTY 684
           PKQL  +LF KL+ P   KTKTG + T A ++E +     +P +  +L  R+  K+KST 
Sbjct: 530 PKQLSVVLFDKLELPKTKKTKTG-YSTAAGEIEALAETNPHPFLDKLLAHREYQKMKSTI 588

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTK 743
            + L   +     R+HT +      TGRL+S +PNLQNIP++T+ G+KIR AF +    +
Sbjct: 589 -EGLIKAVAD-NGRIHTTFKQTVASTGRLSSTDPNLQNIPVRTEAGRKIRSAFTVGAGYE 646

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L++ADYSQIE+R++AH+++ + L + +    D+H  V + +F V I++V+P++RR  K 
Sbjct: 647 CLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDLHNFVGSRVFDVPIDQVTPELRRRVKA 706

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +++ ++YG+S + L+ QL I   EA   ++ YF RF G+  Y++      R++GY  T+F
Sbjct: 707 MSYGLVYGLSAYGLSNQLSISAGEAKSIMESYFERFGGVKSYLDNVVEQARRDGYTSTVF 766

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR +  E+ S     R   ERAA+NAPIQGSAADI + AMI V ++LE     +++LLQ
Sbjct: 767 GRRRYLPELTSDNRVARENAERAALNAPIQGSAADIIKVAMIRVDRALE--SFNSRVLLQ 824

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +HDELV E+   E+    +I+   M+ A    I L VPL+V+     NW E
Sbjct: 825 VHDELVVEIAPGELAEVREIVEREMDSA----ITLLVPLEVSAGTGVNWDE 871



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 161/325 (49%), Gaps = 24/325 (7%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  +RAF+A P  +     G   NA+ GF +M   ++     E   +H AV FD
Sbjct: 1   MLIDGHSMAFRAFFALPAENFSTSGGQHTNAVYGFLSMFANII----AEEKPTHAAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR + +PDYKA R   P     Q+P++       GI  +  + FEADDI+AT   
Sbjct: 57  VGRTTFRTQRFPDYKAQREASPPEFKGQVPIIEDVLGELGIVTLSKENFEADDIVATLVT 116

Query: 127 IAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            A   G F + ++S D+D +QLV  +T L   ++      +   E V +K+G+ P +   
Sbjct: 117 EARAAGDFEIVLVSGDRDYIQLVDASTTLLYPMRGVSNMTRFTPESVEEKYGLTPAQYPD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P +P +G KTA   + +YG+L++++ +A  IK     +N  E  +  R
Sbjct: 177 FAALRGDPSDNLPSVPKVGEKTATKWIAQYGDLDSLIEHADEIKGVA-GDNFRERIDQVR 235

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-----KLINRVATTYDCDA 296
           L+R+L  + TDV + +  E L ++  +   + S    LEF      +++  V TT +  A
Sbjct: 236 LNRELTQMVTDVELPVGPEDLEVKPADVNAVASSFDNLEFGVNLRERVLAAVPTTGEAPA 295

Query: 297 A--------NIEPVVLDINTTENKG 313
                    +IE   LD   TE KG
Sbjct: 296 PEVEELQEIDIEDTPLDQWLTERKG 320


>gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
 gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
          Length = 891

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 292/539 (54%), Gaps = 13/539 (2%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG 499
           G +TL  +  + +  +  +     + H+ K     L   G ++RG   D  + +Y++   
Sbjct: 362 GVDTLDADDEAAIAGWLADAERPVVLHDAKGQLHALAAQGWTVRGLVADTAIATYLVRPD 421

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           + ++D+A ++ ++L    +E++ +   +  +         + A++ +   L LW ++  +
Sbjct: 422 QRAYDLADLSVRYL---HRELVTTGADTGQLAFEEVDTGADVAVQRARAALDLWAVIGAE 478

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L     + +   L+ P++DV+  ME TGI +D D L  + AE ++ +L   +  Y + G 
Sbjct: 479 LEASDSMSLLADLELPLVDVLMTMESTGIAVDTDHLDTLHAEFTERMLGAAQEAYAVIGR 538

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLS 678
           + NL SPKQL  +LF +L  P   +TKTG + T A  L+ +     +P ++++L  R ++
Sbjct: 539 EVNLGSPKQLQVVLFDELGMPRTKRTKTG-YTTDADALQGLFAKTQHPFLEHLLAHRDVT 597

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF- 737
           +++ T  + L   +     R+HT Y+     TGRL+S +PNLQNIPI+T+ G++IR AF 
Sbjct: 598 RLRQTV-EGLQKTVAP-DGRIHTTYAQTIAATGRLSSADPNLQNIPIRTESGRRIREAFC 655

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
           + P  + L++ADYSQIE+RI+AH+++   L + F    D H ++AA++F  +   +   +
Sbjct: 656 VGPGFETLLTADYSQIEMRIMAHLSEDAGLIEAFRTGEDFHTVMAAKVFDRDPGDIDGGL 715

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R   K +N+ + YG+S + L  QL I   +A   +  YF  F G+ +Y+    +  RQ G
Sbjct: 716 RARIKAMNYGLAYGLSSYGLGQQLGISPGDAQVLMDDYFQTFGGVRDYLHGVVDEARQTG 775

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           +  TI GRR +  ++ S     R + ER A+NAPIQGSAAD+ + AM+ V ++L D  L 
Sbjct: 776 FTATILGRRRYLPDLQSDNRQRREMAERMALNAPIQGSAADLIKVAMLGVDRALADAGLG 835

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ++MLLQ+HDELV EV   E      ++   M  A     +L VPL V++ V   W E  
Sbjct: 836 SRMLLQVHDELVLEVAPGERDALEALVREQMAAAA----DLSVPLDVSVGVGRTWHEAG 890



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 181/355 (50%), Gaps = 25/355 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L L+DG S  YRAF+A P+ +     G   NA+ GF +ML  +L    ++   +H AV
Sbjct: 5   DRLLLIDGHSVAYRAFFALPVENFATTTGQHTNAVFGFTSMLINVL----RDETPTHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y +YK NR K P+    Q+PL++    A GI   E  GFEADDII T
Sbjct: 61  AFDVSRRTFRTEEYAEYKGNRSKSPDEFKSQIPLIKEVLDALGIRTFEKDGFEADDIIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            T  A++ G  V I + D+D +QLV+ TT +    K      ++  E V +K+G+ P + 
Sbjct: 121 LTREAQEAGMEVLICTGDRDALQLVTDTTTVLYPRKGVSDLARMTPEVVREKYGVDPAQY 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DN+PG+PG+G KTAA  +  YG+LE+++    ++  K    ++ E+ ++
Sbjct: 181 PELAALVGETSDNLPGVPGVGPKTAAKWIATYGSLESLVAEVDQVPGKA-GASLREHLDS 239

Query: 240 ARLSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT---TYDCD 295
              +R++  L  D+ +  +P +       N   + +   +LEF  L  R+ +     D  
Sbjct: 240 VLRNRRINALVRDLSLDAVPADLAFSTKWNREAIHTVFDSLEFAALRERLFSYLGGGDES 299

Query: 296 AANIEPVVLDINTTENKGIA-----------IETEIDRDTTIKTSQFSSLSDQTS 339
            A    V +++      G+A           +  E+D DTT   ++  +L+  T+
Sbjct: 300 VAADAAVDVELTVVPAGGVAAWLSEHVGADPVGLEVDGDTTPTDARARALAIATA 354


>gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963]
          Length = 915

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 178/535 (33%), Positives = 297/535 (55%), Gaps = 12/535 (2%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRS 501
           +T T E  + L  +  +    K  H  K+    L   G ++ G   D  L +Y++  G+ 
Sbjct: 383 STATPEDEAALGDWLADASQPKALHEAKWAIHALRGRGWTLGGLTSDTALAAYLVRPGQR 442

Query: 502 SHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPK 559
           S ++  ++ ++L    R E     + S+  D    D++  E A+ ++  +L L   L  +
Sbjct: 443 SFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAEAAETAMLSAQAVLDLAAALGTE 502

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L   +   +   ++ P+   ++Q+E TGI +D   L  + +  +  +     + Y++  +
Sbjct: 503 LESIESKSLLSDMELPLTIELAQIEATGIVVDSAHLHDLQSRFASQVADAANSAYEVIDK 562

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLS 678
           + NL SPKQL  +LF +L  P   KTKTG + T A+ L+ + +   +P ++++L  R  +
Sbjct: 563 QINLGSPKQLQVVLFEELDMPKTKKTKTG-YSTDAEALQGLFDKTGHPFLEHLLAHRDAT 621

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           ++K T  D L   + +   R+HT ++     TGRL+S +PNLQNIP++ D G++IR  F+
Sbjct: 622 RMKVT-VDGLLKAVAE-DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGFV 679

Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
                  L++ADYSQIE+RI+AH++    L + F    D+H  V +  FGV IE+V+P++
Sbjct: 680 VGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPEL 739

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           RR  K +++ + YG+S + LA+QL+I   EA   +  YF RF G+ +Y+       R++G
Sbjct: 740 RRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDG 799

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           Y  T++GRR +  ++NS     R + ERAA+NAPIQG+AADI + AMI+V K+L D  L 
Sbjct: 800 YTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALADAGLK 859

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++MLLQ+HDELV EV   E+   + ++   M  A    I L VPL V++    +W
Sbjct: 860 SRMLLQVHDELVLEVVASELEEVTALVKDKMATA----IELSVPLDVSVGTGRSW 910



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 161/293 (54%), Gaps = 16/293 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  + K H G   NA+ GF +ML  LL++ +     +H A  F
Sbjct: 28  LMLLDGHSLAFRAFYALPAENFKTHSGQATNAVYGFTSMLINLLRDEQP----THLAAAF 83

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR +++P+YKA R K P+    Q+ + +    A GIP +  +GFEADD+IAT T
Sbjct: 84  DVSRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVLGALGIPVMAEEGFEADDVIATLT 143

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             AE  G+ V +++ D+D +QLV+   T LY      +  +     V +K+ + P +   
Sbjct: 144 TQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGASELTRFTPTAVEEKYSLSPAQYPD 203

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238
             AL GD  DN+PGIPG+G KTA   ++EYG+L+ ++ N  +++ K     REN+     
Sbjct: 204 FAALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLVDNVDKVRGKVGDSLRENL----A 259

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              L+R+L  +  DVP+    E L+L   +  ++ +    LEF  L +R+  T
Sbjct: 260 NVLLNRQLTEMVRDVPLPYTPEQLVLAPWDREKIHALFDDLEFKVLRDRLFAT 312


>gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium]
          Length = 803

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 248/414 (59%), Gaps = 8/414 (1%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  VY ++++P+++V+  +  TGI +D   L  +S  +   L +LE  IY  +G +FN++
Sbjct: 386 LASVYVKIEQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHAGREFNIN 445

Query: 625 SPKQLGDILFTK--LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           SPKQ+G++LF +  LK  +  KT  GQ  T   +LE++   D+PII  IL +R+L K+ S
Sbjct: 446 SPKQMGEVLFDEMGLKPKNQKKTAGGQRSTKESELEKMRE-DHPIITEILRYRELQKLVS 504

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  ++    R+ T +      TGR+AS  PNLQNIPI+T+  + IR+AF++ P 
Sbjct: 505 TYIDNLPPLVSA-DGRLRTTFVQTGAATGRMASQNPNLQNIPIRTEESKAIRQAFVASPG 563

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             ++S DYSQIELRI A +++   + ++F    D+H  VA  +FGV  E+V+ +MRR AK
Sbjct: 564 YSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVAVRVFGVTPEEVTREMRRKAK 623

Query: 803 TINFSIIYGISPFRLATQL--RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            INF I+YG+    L   L     R EA ++   YF+ F  + EY+E+TK F R+NGY E
Sbjct: 624 VINFGILYGMGVNALRGNLGEGTSREEAQEFFNAYFNTFTRLAEYLEETKAFARKNGYTE 683

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--T 918
           T+FGRR H+  + S    IR   ER AINAP+QG+AAD  R AM  V++ ++  K     
Sbjct: 684 TLFGRRRHFPGMQSTAPFIRAQAERMAINAPVQGTAADAMRVAMNLVYQYIQTEKKTDDV 743

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +LLQ+HDEL+FE+    + T    +V  M+          VP+K ++ V  NW
Sbjct: 744 HILLQVHDELLFEIKNNVLETEIPKLVELMQGVLEGYDTSGVPIKADVAVGPNW 797



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 20/305 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D  + ++RA++A P  +    G P  A+ G   ML K++++ + + IA+     FD
Sbjct: 19  LVLLDSHAILHRAYHALPDFASP-SGEPTGALYGVVAMLLKIIEDFKPDYIAA----CFD 73

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  T+R+E +  YK  R K  + L+ Q+   R    AFGIP  E  GFEADD++ T  Y
Sbjct: 74  LPEPTYRHEAFAAYKGTRSKTDDALVQQIIRSRDIFAAFGIPIYEHPGFEADDMLGTIAY 133

Query: 127 -IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKMV 180
              + +   V I S D D MQ V        T+K+   D      E V +++G  P+ + 
Sbjct: 134 QTRDDKDLTVIIASGDMDTMQCVEKKRVQVYTLKKGIKDTILYDEEAVKERFGFGPKLVP 193

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-------KKRRENI 233
             + L GD+ DNIPGI GIG KTA  L+ ++G++++I     + +        K R   +
Sbjct: 194 DYKGLRGDTSDNIPGIVGIGEKTATDLITQFGSIDDIYKKLKKDEAPFLAAGIKPRIIGL 253

Query: 234 LEYA-ETARLSRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           L+   E A+ S+ L  +RTD PIT +P      E  +   +++    L F  L  ++ T 
Sbjct: 254 LKAGEEEAQFSKMLATIRTDAPITFVPHATHWQERADTDVILNLFSELGFRTLGAKIKTL 313

Query: 292 YDCDA 296
           +   A
Sbjct: 314 FALAA 318


>gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100]
          Length = 864

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 264/435 (60%), Gaps = 9/435 (2%)

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
             + +  +  L  +L  KL   K   +Y  L+ P+  ++++ME  GI +D + L+++S +
Sbjct: 434 GFDRAQAVRDLVKVLTEKLAAAKQEELYYDLEVPLCLILARMEHEGIAVDGEHLQELSND 493

Query: 602 ISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            +  +        +L+G+   NLSSPKQL  +LF     P   +TKTG + T A +LE++
Sbjct: 494 YAAKIDEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTG-YSTAAAELEKL 552

Query: 661 NCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               N P + +++  R+  K+K+T  D L   I     R+HT ++     TGRL+S +PN
Sbjct: 553 TAQTNHPFLAHLMAHREYQKMKTTI-DGLIEAIGD-DGRIHTTFNQKGAATGRLSSSDPN 610

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++TD G++IR AF +   + L++ADYSQIE+R++AH+++   L + +++  D+H 
Sbjct: 611 LQNIPVRTDAGRRIRAAFHAGWGETLLTADYSQIEMRVMAHLSQDEGLIEAYKSGEDLHN 670

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL I   EA   ++ YF RF
Sbjct: 671 YVGSRVFDVPVDQVTPELRRRVKALSYGLVYGLSAFGLSQQLGISAGEAKVIMENYFTRF 730

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+  Y+++  +  ++ GY ET++GRR +  E+NS     R   ERAA+NAPIQG+AADI
Sbjct: 731 GGVKRYLDEVVHQAKETGYTETLYGRRRYLPELNSSNRVARENAERAALNAPIQGTAADI 790

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ V +++ +  L +++LLQ+HDELV EV + E+   S+++   M+ A      LR
Sbjct: 791 IKLAMLRVDRAIREQNLKSRVLLQVHDELVVEVAKGELDKVSELVQREMDAAA----RLR 846

Query: 960 VPLKVNIKVSNNWQE 974
           VPL+++     NW E
Sbjct: 847 VPLEISAGHGKNWDE 861



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/250 (36%), Positives = 141/250 (56%), Gaps = 11/250 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  +     G   NA+ GF  M   L++  +     +H A  F
Sbjct: 6   LLLLDGHSLAFRAFYALPAANFSTTGGQHTNAVYGFLGMFLGLMEKEQP----THVAAAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E +P+YKA RP  P     Q+ L+R A +A GI  ++ + +EADDIIAT  
Sbjct: 62  DLSGPTFREEHFPEYKAQRPSTPPEFKGQITLIRKALEALGITTLDKEAYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+K G    I + D+D +QLV+    +  T+K      +   E V KK+G+ P++   
Sbjct: 122 TEADKAGMETLICTGDRDSLQLVNDDITVLYTLKGVSDLHRFTPEAVEKKYGVTPQQYPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL GD+ DN+PG+PG+G KTA   + +YG+L+ ++     IK K   E++ E+ ++ +
Sbjct: 182 LAALRGDTSDNMPGVPGVGPKTAQKWISQYGSLQGVIDVMDSIKGKV-GESLREHIDSVK 240

Query: 242 LSRKLV-MLR 250
           L+R++  M+R
Sbjct: 241 LAREITEMVR 250


>gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f]
 gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f]
          Length = 891

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 179/537 (33%), Positives = 290/537 (54%), Gaps = 11/537 (2%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRS 501
             LT    + L  +  +    K GH++K   L L   G ++ G   D  L +Y+   G+ 
Sbjct: 362 TALTAADSAALGAWLADPDRAKAGHDLKGPMLALAEAGFTLAGVTSDTALAAYLALPGQR 421

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           S D+A +  ++L    K   ++    + +D   ++   E     +   L+L   L   L 
Sbjct: 422 SFDLADLTLRYLHRELKSDTET-NGQLTLDGSGEADEAEADAIRARAALELAAALDGDLE 480

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                 +   ++ P++ V+++ME  GI  D++ L ++    S  +  +    + L G  F
Sbjct: 481 RRSAARLLREMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAHGLVGRSF 540

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKI 680
           NL SPKQL  ILF +L  P   K KTG + T A  L  +    D+P+I  +L  R ++++
Sbjct: 541 NLGSPKQLQQILFDELALPKTKKIKTG-YTTDADALAWLATQSDHPLIPVLLHHRDVARL 599

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739
           K T  DSL   I+    R+HT ++     TGRL+S +PNLQNIPI+T  G++IRRAF+  
Sbjct: 600 K-TVVDSLIPMIDD-AGRIHTTFNQMIAATGRLSSTDPNLQNIPIRTPQGRQIRRAFVVG 657

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           P  + L++ADYSQIE+R++AH++    L + F +  D+H  VAA+ F + + +V P++RR
Sbjct: 658 PGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHTFVAAQAFDLPVSEVDPELRR 717

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
             K +++ + YG+S F LA QL I   EA +++  YF RF G+ +++    +  R++GY 
Sbjct: 718 RIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLRGVVDQARRDGYT 777

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ETI GRR +  ++ S  +  R + ER A+NAPIQGSAADI + AM+ V ++L    L ++
Sbjct: 778 ETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKIAMLGVDRALRSRDLRSR 837

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +LLQ+HDELV E+   E      ++   M  A      + VPL+V++     W +  
Sbjct: 838 LLLQVHDELVLEIAPGERVEVEALVRAEMGAAY----EMSVPLEVSVGSGLTWDDAG 890



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 10/293 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M     L L+DG S  YRAF+A P+ +     G P NA+ GF +ML   L++ +     +
Sbjct: 1   MADRPRLLLLDGHSLAYRAFFALPVENFSTSTGQPTNAVYGFTSMLINALRDEKP----T 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV +D P  TFR+  Y +YKA R + P   + Q+ L+    +A  +P +   G+EADD
Sbjct: 57  HVAVAWDLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCEALAVPGVSAPGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           +IAT    A  EG  V I++ D+D +QLV+    +  T K      +   + V  K+G+ 
Sbjct: 117 VIATLATQAAGEGMDVLIVTGDRDALQLVNEHVTVLMTRKGISDMTRFTPDEVQTKYGLS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +     AL GD  DN+P +PG+G KTA   +Q++G+L +++  A  I  K        
Sbjct: 177 PTQYPDFAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLADLVDRADEIGGKTGASLRAN 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            A   R +R L  L  +VP+ +    L L   +   +      L+F  L  R+
Sbjct: 237 LANVIR-NRSLTELAREVPLELGPGDLRLHPWDREAVHQLFDTLQFRVLRERL 288


>gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
 gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
          Length = 895

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 176/539 (32%), Positives = 293/539 (54%), Gaps = 11/539 (2%)

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDS 498
            G    T E  + L  +  +    KI H+ K  +L +  +G S+RG   D  L +Y++  
Sbjct: 361 AGVEGFTPEDEAALAGWLADATKPKIMHDAKGPELAIDAHGWSLRGLVTDTALSAYIVAP 420

Query: 499 GRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
            + S+D+A +  ++L    ++E    ++S    D++    V   ++  +  +L L   L 
Sbjct: 421 DQRSYDLADLTLRYLKRELKQEDDGGQESLFGDDEVGGDGVATTSMLYARAVLDLAAELD 480

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
             +       +   ++ P++ ++++ME TGI +D + L  +    +  +    +  Y + 
Sbjct: 481 SAVEAAGGDRLLSEVELPLLHLLARMEKTGIAVDTEHLDALERHFAGQMKQAADEAYGVI 540

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQ 676
           G++ NL SPKQL  +LF +L  P   +TKTG W T A  L+Q+    ++P +  +L  R 
Sbjct: 541 GKEINLGSPKQLQVVLFDELDMPKTKRTKTG-WTTDADALQQLYVKTEHPFLLALLRHRD 599

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           +++++ T    L     +   R+HT ++     TGRL+S EPNLQNIP++T+ G+ IR+ 
Sbjct: 600 VTRLRVTIEGLLKT--VQDDGRIHTTFNQTIAATGRLSSTEPNLQNIPVRTEEGRGIRKG 657

Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           F+     + L++ADYSQIE+RI+AH+++   L + F +  D H + AA +FGV+ + VS 
Sbjct: 658 FVVGGGFESLMTADYSQIEMRIMAHLSEDELLIEAFRSGRDFHSITAARVFGVDPDAVSV 717

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + R   K +N+ + YG+S F L+ QL I  SEA   ++ YF  F GI +Y+       R+
Sbjct: 718 EQRAKIKAMNYGLAYGLSAFGLSQQLGIEPSEARGLMEEYFETFGGIRDYLRSLVEEARR 777

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GY ETI GRR +  ++ S     R   ER A+NAPIQGSAAD+ + AM+ V  ++++  
Sbjct: 778 TGYTETIMGRRRYLPDLLSDNRQRRETAERMALNAPIQGSAADLIKVAMLRVQAAIDEAD 837

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+++MLLQ+HDELVFEV   E      ++   M  A     +L VPL V++    +W E
Sbjct: 838 LSSRMLLQVHDELVFEVAPGEREALESLVRAQMGSAA----DLNVPLDVSVGTGLSWHE 892



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 150/282 (53%), Gaps = 10/282 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L L+DG S  YRAF+A P+ +     G   NA+ GF +ML  +L    ++   +H AV
Sbjct: 7   DRLLLLDGHSLAYRAFFALPVENFSTVTGQNTNAVYGFTSMLVNVL----RDETPTHVAV 62

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y +YKA R K P+    QLPL++       I  + + G+EADDIIAT
Sbjct: 63  AFDLSRQTFRLEEYSEYKAKRNKTPDEFKSQLPLIQRLLDVLHIRHLSVAGYEADDIIAT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKM 179
                 + G  V I++ D+D +QLV+  +T LY         ++  E V  K+G+PP + 
Sbjct: 123 LVTQGLEAGMEVLILTGDRDSLQLVTESSTVLYPMRGVSDLARMTPEAVETKYGVPPHRY 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G+  DN+PGIPG+G KTAA  +  Y  L+N++ +A +IK K   +N+  +   
Sbjct: 183 PELAALVGEDSDNLPGIPGVGPKTAAKWINTYDGLDNVITHADQIKGKA-GDNLRAHLGD 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
              +R+L  L  D+P+ +    L   + +    +  L  LEF
Sbjct: 242 VMRNRRLNALVRDLPLEVGPTDLGRVEWDRAAALELLDELEF 283


>gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
 gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
          Length = 902

 Score =  300 bits (769), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 179/533 (33%), Positives = 295/533 (55%), Gaps = 21/533 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           + L  +F +    K+GH++K     L   G  + G   D  L +Y+   G+ + D+  + 
Sbjct: 375 AALAAWFADPTPTKVGHDLKTAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGDLV 434

Query: 510 QKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE--NSNVILQLWLLLRPKLIVEK 564
           Q++L  T          ++ S+  ++   +Q ++ + +   +  I+ L   L   L    
Sbjct: 435 QRYLHRTLDPEHSTNAGQQLSLIPEENEGAQTEQDSRDMVRARAIIDLAEALEQHLDSLG 494

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              +   ++ P++ V+ +ME  GI +D D L  + +  +  + S  +  Y   G + NL 
Sbjct: 495 QKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEIGREVNLG 554

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL----EQINCGDNPIIKNILEWRQLSKI 680
           SPKQL  +LF +L  P   +TKTG + T A  L    EQ     +P + ++L  R ++++
Sbjct: 555 SPKQLQVVLFDELGMPKTKRTKTG-YTTDADALVSLHEQTG---HPFLTHLLRHRDVTRL 610

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739
           K T  + L   +     R+HT +      TGRL+S EPNLQNIPI+TD G+ IRRAF+  
Sbjct: 611 KVT-VEGLRKSVGD-DGRIHTTFQQTVAATGRLSSTEPNLQNIPIRTDEGRLIRRAFVPG 668

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           P    L++ADYSQIE+RI+A +++   L + F +  D+H  VA + FG+  E+V+P++RR
Sbjct: 669 PQADLLLTADYSQIEMRIMATLSEDEGLIEAFRSGEDLHTFVAMKAFGLPAEQVTPELRR 728

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
             K +++ + YG+S + L+ QL+I   EA + ++ YF RF G+ +Y+  T    R++GY 
Sbjct: 729 RIKAMSYGLAYGLSAYGLSGQLKISVDEAKEQMEAYFSRFGGVRDYLRDTVARARKDGYT 788

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ETIFGRR +  ++NS     R + ER A+NAPIQGSAAD+ + AM++V + +    L ++
Sbjct: 789 ETIFGRRRYVPDLNSDNRQKRAMAERIALNAPIQGSAADVIKVAMVNVQRRIRAEGLRSR 848

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV EV  +E+   ++++   M  A      L VPL+V++    NW
Sbjct: 849 MLLQVHDELVCEVVADELAVMTELLKQEMGGA----YPLAVPLEVSVGSGANW 897



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 133/257 (51%), Gaps = 10/257 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           E  L L+DG S  YRAFYA P  +     G   NA+ GF +ML  LL++ +     +H A
Sbjct: 10  ERVLLLMDGHSLAYRAFYALPPENFSTTTGQTTNAVYGFTSMLINLLRDEQP----THVA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    T+R E + DYKANR   P     Q+ L++    A  IP +  + +EADDIIA
Sbjct: 66  VAFDLSRQTWRREEFVDYKANRSASPSEFAGQIDLIKEVLTAMRIPYLTAENYEADDIIA 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEK 178
           T    A  EG  V I + D+D +QLVS   T LY      +  +     V  K+G+ P +
Sbjct: 126 TLATRAVAEGLNVRICTGDRDALQLVSDQVTLLYLQRGVSEMARYTPAAVEAKYGLTPLQ 185

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTA   ++E+G+L  ++     ++ K   + + E   
Sbjct: 186 YPDFAALRGDPSDNLPGIPGVGEKTATKWIREFGSLTALVDRVDEVRGKA-GDALREALP 244

Query: 239 TARLSRKLVMLRTDVPI 255
               +R+L  L  +VP+
Sbjct: 245 HVLTNRRLTELVREVPV 261


>gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152]
 gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152]
          Length = 910

 Score =  300 bits (769), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 188/570 (32%), Positives = 309/570 (54%), Gaps = 31/570 (5%)

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
           A+AI+  D         E+ +ID++V T +D            + L  +  +    K  H
Sbjct: 362 ALAIAAADG--------ESGYIDVTVLTPEDE-----------AALAAWLADPAVPKALH 402

Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRK 525
             K     L   G ++ G   D  L +Y++  G+ S ++  ++ ++L    R E   + +
Sbjct: 403 EAKSAMHALRGRGWTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQ 462

Query: 526 SSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
            S+  D+ + D++     +  +  +L L   L  +L   +   +   ++ P++ V++ +E
Sbjct: 463 LSLLDDEDAVDAETARAEMLRARAVLDLAAALDAELEQIESTALLTDMELPLLGVLATLE 522

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D + L+ +  + +  +    E  Y + G++ NL SPKQL  +LF +L  P   +
Sbjct: 523 EAGIAVDCEQLEALQRQFADKVAQAAEAAYGVIGKQINLGSPKQLQVVLFDELDMPKTKR 582

Query: 645 TKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           TKTG + T A  LE +     +P ++++L  R  +++K T  D L   +     R+HT +
Sbjct: 583 TKTG-YTTDADALESLFEKTQHPFLEHLLAHRDATRLKVT-VDGLLKSVAD-DGRIHTTF 639

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762
           +     TGRL+S EPNLQNIPI+TD G+ IR  F+  P   +L++ADYSQIE+RI+AH++
Sbjct: 640 NQTIAATGRLSSTEPNLQNIPIRTDTGRMIRDTFVVGPGYAELMTADYSQIEMRIMAHLS 699

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L + F +  D+H  VA++ F + I +VSP++RR  K +++ + YG+S + L+ QL+
Sbjct: 700 GDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAMSYGLAYGLSSYGLSAQLK 759

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I  +EA + +  YF RF  I +Y+ +     R+ GY ET+FGRR +  +++S     R  
Sbjct: 760 ISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLFGRRRYLPDLDSSNRQRREA 819

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER A+NAPIQG+AADI + AMI VH+ + +  L ++MLLQIHDELVFEV E E     Q
Sbjct: 820 AERMALNAPIQGTAADIIKVAMIDVHRGIREAGLRSRMLLQIHDELVFEVAEGERDALEQ 879

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +    M  A    I L VPL V++    +W
Sbjct: 880 LAREKMSAA----IALSVPLDVSVGTGRSW 905



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 155/290 (53%), Gaps = 10/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  + K   G   NA+ GF  ML  LL++ +     +H A  F
Sbjct: 23  LLLLDGHSLAYRAFFALPAENFKTVTGQTTNAVYGFTAMLINLLRDEKP----THIAAAF 78

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E YP+YKANR + P+    Q+ L +    A GIP + I GFEADD+IAT T
Sbjct: 79  DVSRKTFRTEAYPEYKANRSQTPDEFRGQVELTKDVLGALGIPVMAIDGFEADDVIATLT 138

Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A+ EGF + I++ D+D +QLV    T LY         +   E V+ K+G+ P +   
Sbjct: 139 TQAKAEGFRILIVTGDRDSIQLVDDDVTVLYPRKGVSDLTRFTPEEVMTKYGLTPNQYPD 198

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  ++EYG+L  ++     +K K   + +  +  +  
Sbjct: 199 YAALRGDPSDNLPGIPGVGEKTAAKWIREYGDLATLVDKVDTVKGKV-GDALRAHLSSVV 257

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           L+R+L  +  DVP+    + L     +  ++      LEF  L +R+  T
Sbjct: 258 LNRQLTEMVKDVPLPYTPDQLAQGPWDREKIHRLFDDLEFRVLRDRLFET 307


>gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478]
          Length = 900

 Score =  300 bits (767), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 289/510 (56%), Gaps = 19/510 (3%)

Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRK 525
           KL +H  G   RG+       D  L +Y++  G+ S  +  ++ ++L    R E  + ++
Sbjct: 395 KLAIHDLG--GRGWTLDGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQ 452

Query: 526 SSIPID-KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
            S+  D +  D Q  + AI  +  +  L   L  +L       +   ++ P+  V++ ME
Sbjct: 453 LSLLDDMEGVDDQAVQTAILRARAVADLAEALDAELARIDSTALLADMELPVQRVLADME 512

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D  LL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L  P   +
Sbjct: 513 RAGIAVDLRLLAELQSQFADQIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKR 572

Query: 645 TKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           TKTG + T A  ++ +     +P ++++L  R ++++K T  D L N +     R+HT +
Sbjct: 573 TKTG-YTTDADAVQGLFEKTGHPFLQHLLAHRDVTRLKVT-VDGLLNSVAA-DGRIHTTF 629

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762
           +     TGRL+S EPNLQNIPI+TD G++IR AF+      +L++ADYSQIE+RI+AH++
Sbjct: 630 NQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVGAGYSELMTADYSQIEMRIMAHLS 689

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L + F    D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+TQL+
Sbjct: 690 GDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSTQLK 749

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I   EA   + +YF RF G+ +Y+       R++GY  T+ GRR +  E++S    +R  
Sbjct: 750 ISTEEAKVQMDQYFARFGGVRDYLMAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREA 809

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ERAA+NAPIQGSAADI + AMI V K+L +  LA++MLLQ+HDEL+FE+   E      
Sbjct: 810 AERAALNAPIQGSAADIIKVAMIEVDKALTEAGLASRMLLQVHDELLFEIAPGERERVEA 869

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++   M  A      L VPL+V++    +W
Sbjct: 870 LVREKMGGAY----PLDVPLEVSVGFGRSW 895



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 163/302 (53%), Gaps = 14/302 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H A  F
Sbjct: 13  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E YP+YKANR   P+    Q+ + +    A GI  +   GFEADDIIAT  
Sbjct: 69  DVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLGALGITVLAEPGFEADDIIATLA 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AEKEG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P +   
Sbjct: 129 TQAEKEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPAQYPD 188

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA   + EYG+L+ ++ +   ++ K         A   R
Sbjct: 189 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQELVDHVDSVRGKVGDALRAHVANVVR 248

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  DVP+    + L L+  +   +      LEF  L +R+   +D  AA +EP
Sbjct: 249 -NRELTELVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAA-VEP 303

Query: 302 VV 303
            V
Sbjct: 304 EV 305


>gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411]
 gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411]
          Length = 859

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 172/523 (32%), Positives = 286/523 (54%), Gaps = 28/523 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L ++  N    K  H+ K     L   G+++ G E D  L +Y+L     +  +A + Q+
Sbjct: 357 LAEWLANPQATKWLHDSKKAYHTLQNQGLTLDGVEHDTSLAAYLLRPDVRTLSLADVVQR 416

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            + +   E      ++ P              E +  + +L   L P++       +Y  
Sbjct: 417 HVGHELSE-----GATGP--------------ERAQAVAELVKALTPEIEAAGQAELYFD 457

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLG 630
           L+ P+  +++ ME  GI +D   L+++S +    L        +L+GE + NLSSPKQL 
Sbjct: 458 LEVPLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAARELAGEPELNLSSPKQLQ 517

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            +LF     P   KTKTG     A+  +     ++P + +++  R+  K+KST  D L  
Sbjct: 518 KVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHREYQKMKSTI-DGLIE 576

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISAD 749
            +     R+HT ++     TGRL+S +PNLQNIP++TD G+KIR AF +    + L++AD
Sbjct: 577 AVGD-DGRIHTTFNQKGAATGRLSSSDPNLQNIPVRTDAGRKIRAAFTVGEGYETLLTAD 635

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE+R++AH+++   L + + +  D+H  V + +F V +++V+P++RR  K +++ ++
Sbjct: 636 YSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLV 695

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+S F L+ QL+I   EA   +  YF RF G+  Y++      ++ GY ET++GRR + 
Sbjct: 696 YGLSAFGLSQQLKISAWEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGRRRYL 755

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            E+NS     R   ERAA+NAPIQG+AADI + AM+ V + +   +LA+++LLQ+HDELV
Sbjct: 756 PELNSSNRVARENAERAALNAPIQGTAADIIKLAMLRVDREITRQQLASRVLLQVHDELV 815

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            EV   E+   ++++   M+ A      LRVPL V+    +NW
Sbjct: 816 VEVAPGELEQITELVEREMDAAA----QLRVPLDVSAGTGDNW 854



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 150/291 (51%), Gaps = 17/291 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  +     G   NA+ GF  M   L+   +     +H A  F
Sbjct: 4   LLLLDGHSLAFRAFYALPAANFSTVGGQHTNAVYGFLGMFLTLMDKEQP----THVAAAF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E +P+YKA RP  PE    Q+ L+R   +A G+  ++ + +EADDIIAT  
Sbjct: 60  DLSGPTFREESFPEYKAQRPSTPEEFKGQIELIRRTLEALGVTTLDKESYEADDIIATLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
               K+G  V I + D+D +QLV+    +  T+K      +   + V +K+G+ P +   
Sbjct: 120 TEGAKDGMDVLICTGDRDSLQLVTEDVTVLYTLKGVSELHRFTPQAVEEKYGVTPTQYPD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238
           L AL GD+ DN+PG+PG+G KTA   + +YG+L+ ++ N   I  K     RENI    +
Sbjct: 180 LAALRGDTSDNMPGVPGVGPKTAQKWIAKYGSLQGVIDNMDDIGGKVGANLRENI----D 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288
              L+R +  +  D+ +   L+ L   D +    +   + L+F T L NR 
Sbjct: 236 NVVLARDITEMVRDLKLVDDLDALSPHDIDPNEALGMFEELQFGTGLRNRA 286


>gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3]
 gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3]
          Length = 945

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 178/534 (33%), Positives = 288/534 (53%), Gaps = 12/534 (2%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503
           LT   ++ L  +  + +  K  H++K   L L    + + G   D  L +Y+   G+ S 
Sbjct: 417 LTPADVAALGAWLADPNQPKAAHDVKGPMLALTELDLPLAGVTSDTALAAYLALPGQRSF 476

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA-IENSNVILQLWLLLRPKLIV 562
           D+A +  ++L              + +D   ++  Q HA    +   L+L   L   L  
Sbjct: 477 DLADLVARYLHRDLSADPVPGGQQLTLDGSGEAD-QAHADAVRARACLELADALDADLER 535

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
                +   ++ P++ V++ ME  GI +D + L ++       + ++    +++ G  FN
Sbjct: 536 RSAATLLRDIELPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEIVGRPFN 595

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIK 681
           L SPKQL  ILF +L  P   K KTG + T A  L  +    D+P++  +L  R ++++K
Sbjct: 596 LGSPKQLQQILFDELGLPKTKKIKTG-YTTDADALAWLAVQSDHPLLPVLLRHRDVARLK 654

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SP 740
            T  DSL   I+    R+HT ++     TGRL+S +PNLQNIPI+T  G++IRRAF+   
Sbjct: 655 -TVVDSLIPMIDD-IGRIHTTFNQTIAATGRLSSADPNLQNIPIRTAEGRQIRRAFVVGA 712

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
             + L++ADYSQIE+RI+AH++    L + F +  D+H  VAAE FG+ + +V P++RR 
Sbjct: 713 GYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRR 772

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K +++ + YG+S F LA QL I   EA +++  YF RF G+ +++       R++GY E
Sbjct: 773 IKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLRGVVERARKDGYTE 832

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           TI GRR +  ++ S  S  R + ER A+NAPIQGSAADI + AM+ V ++L     A+++
Sbjct: 833 TILGRRRYLPDLTSDNSQRRQMAERMALNAPIQGSAADIIKIAMLGVDRALCAGGYASRL 892

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQ+HDELV E+   E     +++   M  A      + VPL V++     W +
Sbjct: 893 LLQVHDELVLEIAPGEHDAVERLVRAEMTSA----YTMSVPLDVSVGAGCTWDD 942



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAFYA P+ +     G P NA+ GF +ML  +L++ R     +H AV +
Sbjct: 60  LLLLDGHSLAYRAFYALPVENFSTTTGQPTNAVYGFTSMLINVLRDERP----THVAVAW 115

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+  Y +YKA R + P   + Q+ L+     A  +P +   G+EADD+IAT  
Sbjct: 116 DLPTPTFRHTQYAEYKAGRGETPADFVGQVSLIHQVCDALAVPGVSAPGYEADDVIATLA 175

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +   EG  V +++ D+D +QLV     +  T K      +   + V  K+G+ P +   
Sbjct: 176 TLGAAEGMDVLVVTGDRDALQLVDERVTVLMTRKGISDMVRFTPDEVQAKYGLSPVQYPD 235

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P +PG+G KTA   +Q++G+L  ++ +A  I  K         +E  R
Sbjct: 236 FAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVDHADEIGGKTGASLRAHLSEVIR 295

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +R L  L  DVP+ +    L +   +   +      L+F  L  R+
Sbjct: 296 -NRSLTELSRDVPLDVVPAGLRMRPWDREAVHQLFDTLQFRVLRERL 341


>gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
          Length = 857

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 247/408 (60%), Gaps = 9/408 (2%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSP 626
           +Y  ++ P+  V++ M  TG+ +D+D ++Q   ++ + L  +   I+  +G   FN +SP
Sbjct: 456 LYNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREELEQVLTRIHMETGSATFNPNSP 515

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG++LF  +  P G KT+ G W T A+ LE +   + P+++++L++R   K+ STY +
Sbjct: 516 KQLGEMLFDTMGLPHGKKTQRG-WSTDAETLESLR--EYPLVEDVLQYRAYQKLNSTYVE 572

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L   I +   R+H+ ++     TGRL+S  PNLQNIPI+T+LG ++R  F++ P   L+
Sbjct: 573 GLLKVIGE-DGRIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVAKPGCVLV 631

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            ADYSQIELRILAHI     + Q F N  DIHR  AA+I+G+   +V+P++R  AK INF
Sbjct: 632 DADYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINF 691

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YG   + L+  + +   EA  ++K Y   FP +  Y++KT    + NGYV T+FGRR
Sbjct: 692 GIMYGKGAYSLSKDIGVTVKEADAFLKNYLAAFPSVSGYMDKTIADAKANGYVSTLFGRR 751

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
               E+ S   ++R   ER A N PIQG+AAD+ + AM+ V K L D K+A++++L +HD
Sbjct: 752 RTLPELASTNFNVRASGERMARNTPIQGTAADVIKLAMVRVWKRLRDEKMASRLILTVHD 811

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+ E PE E   A++I+   ME  C   +   VPL  ++    NW E
Sbjct: 812 ELIVEAPEAEAEQAARILREEME-GC---VQYAVPLSTDVHAGKNWLE 855



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/291 (37%), Positives = 162/291 (55%), Gaps = 14/291 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S   RAFY   LL+ K DG   NAI GF N+L  LL+  + + +A    V FD
Sbjct: 3   LLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIYGFLNILLSLLKECQPDEVA----VAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y  YKA R  +PE L  Q+P+++      G   +  +G+EADDI+ T   
Sbjct: 58  LKAPTFRHKMYDGYKATRHAMPEELAQQMPVLKQLLADLGYRTVTAEGWEADDILGTLAA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTC--LYDTV----KEEKIDIEHVIKKWGIPPEKMV 180
                     + + D+D +QLVS +T   L  TV    K   +D + + +K+G+ P++++
Sbjct: 118 ACAARKDDCFLATGDRDSLQLVSESTTVLLAATVMGRSKTVVMDEDAIQEKYGLAPKQLI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAE 238
            +++L GD+ DNIPG+ GIG KTA  L+Q +G+LE +   I+  RIK  K+RE++LE   
Sbjct: 178 EVKSLMGDTSDNIPGVKGIGEKTALSLVQAFGSLEGVYQNIDDKRIK-PKQREHLLEDKP 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            A LS  L  +RTD PI        + + N P  +  L+ LE   LI R  
Sbjct: 237 MAELSHTLGTIRTDAPIDTAEGSYTVGEGNKPAAVRLLQELEIHSLIPRFG 287


>gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
 gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
          Length = 859

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 285/523 (54%), Gaps = 28/523 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L ++  N    K  H+ K     L   G+ + G E D  L +Y+L     +  +A + Q+
Sbjct: 357 LAEWLANPQATKWLHDSKQTYHTLQDQGLKLDGVEHDTSLAAYLLRPDVRTLGLADVVQR 416

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            + +   E      ++ P              E +  + +L   L P++       +Y  
Sbjct: 417 HVGHELSE-----NATGP--------------ERAQAVAELVRALTPEIEAAGQAELYFD 457

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLG 630
           L+ P+  +++ ME  GI +D   L+++S +    L        +L+GE + NLSSPKQL 
Sbjct: 458 LEVPLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAARELAGEPELNLSSPKQLQ 517

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            +LF     P   KTKTG     A+  +     ++P + +++  R+  K+KST  D L  
Sbjct: 518 KVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHREYQKMKSTI-DGLIE 576

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISAD 749
            +     R+HT ++     TGRL+S +PNLQNIP++TD G+KIR AF +    + L++AD
Sbjct: 577 AVGD-DGRIHTTFNQKGAATGRLSSSDPNLQNIPVRTDAGRKIRAAFTVGEGYETLLTAD 635

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE+R++AH+++   L + + +  D+H  V + +F V +++V+P++RR  K +++ ++
Sbjct: 636 YSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLV 695

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+S F L+ QL+I   EA   +  YF RF G+  Y++      ++ GY ET++GRR + 
Sbjct: 696 YGLSAFGLSQQLKISAGEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGRRRYL 755

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            E+NS     R   ERAA+NAPIQG+AADI + AM+ V + +   +LA+++LLQ+HDELV
Sbjct: 756 PELNSSNRVARENAERAALNAPIQGTAADIIKLAMLRVDREITRQQLASRVLLQVHDELV 815

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            EV   E+   ++++   M+ A      LRVPL V+    ++W
Sbjct: 816 VEVAPGELEQITELVEREMDAAA----QLRVPLDVSAGTGDSW 854



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 150/291 (51%), Gaps = 17/291 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  +     G   NA+ GF  M   L+   +     +H A  F
Sbjct: 4   LLLLDGHSLAFRAFYALPAANFSTVGGQHTNAVYGFLGMFLTLMDKEQP----THVAAAF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E +P+YKA RP  PE    Q+ L+R   +A G+  ++ + +EADDIIAT  
Sbjct: 60  DLSGPTFREESFPEYKAQRPSTPEEFKGQIELIRRTLEALGVTTLDKESYEADDIIATLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
               K+G  V I + D+D +QLV+    +  T+K      +   + V +K+G+ P +   
Sbjct: 120 TAGAKDGMDVLICTGDRDSLQLVTEDVTVLYTLKGVSELHRFTPQAVEEKYGVTPTQYPD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238
           L AL GD+ DN+PG+PG+G KTA   + +YG+L+ ++ N   I  K     RENI    +
Sbjct: 180 LAALRGDTSDNMPGVPGVGPKTAQKWIAKYGSLQGVIDNMDDIGGKVGANLRENI----D 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288
              L+R +  +  D+ +   L+ L   D +    +   + L+F T L NR 
Sbjct: 236 NVVLARDITEMVRDLKLVDDLDALSPRDIDPNEALGMFEELQFGTGLRNRA 286


>gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
 gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
          Length = 873

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 197/515 (38%), Positives = 305/515 (59%), Gaps = 31/515 (6%)

Query: 465 IGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEI 520
           IGHN+K+D  +L  Y I     F D M++ +++D   S   + S+A+++L++     KEI
Sbjct: 383 IGHNLKFDFKMLKDYKIKTPTPFADTMILGWIIDPD-SPVGLDSLAKRYLNHQNIKYKEI 441

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           +   ++   ID  + ++   +A E++ + L+L+ +L+ K   E    + E ++ P+I+++
Sbjct: 442 VGKNQNFSEIDIKTAAK---YASEDAIITLKLYEVLKEKTWEEVKWDI-ENIEMPLINIL 497

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             ME  GI++D + L+++  E+++ L +L + IY+L+G +FN+ SPKQL  ILF  LK P
Sbjct: 498 IDMEKEGIKVDIEYLEKLQKELTQKLENLTKEIYNLAGSEFNIKSPKQLSHILFKVLKLP 557

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK-RTQRV 699
              KTKTG + T  + L  +    +PII+ +LE+R+  K+ +TY   L  +  K + Q+V
Sbjct: 558 VKKKTKTG-YSTDEKVLNSLK-NTHPIIEKLLEYRKFDKLLTTYIIPLKEYAKKDKNQKV 615

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           +T +    T TGRL+S  PNLQNIP  T++   IR AFI+   K  IS DYSQIELR+LA
Sbjct: 616 YTNFLQTGTATGRLSSKNPNLQNIPTSTEIN--IRNAFIT--DKLFISLDYSQIELRLLA 671

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H +K   L + F N  DIH   AA+IFG   E  + + R  AK+INF +IYG+ P +L+ 
Sbjct: 672 HFSKDPHLIEAFLNDKDIHLETAAKIFG---EDKAKEYRSIAKSINFGLIYGMGPKKLSE 728

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            + +   EA ++I++YF  F  + ++IEKTK   ++ GYVET+F RR  +D  NS  +  
Sbjct: 729 TINVSTKEAKEFIEKYFENFSTVKDFIEKTKVETKEKGYVETLFKRRRFFD-FNSANART 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
               ER A+N   QGSAADI ++AMI +         ++KM+LQIHDEL+FE+  ++   
Sbjct: 788 LAAYEREAVNTIFQGSAADIIKKAMIDIKNKFP----SSKMILQIHDELIFEIDNKDEAY 843

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + I   ME A    I L VPLKV I  +  W E
Sbjct: 844 EYKEI---MENA----IKLEVPLKVGISFAKRWGE 871



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/290 (40%), Positives = 163/290 (56%), Gaps = 19/290 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F++R FYA P L  K  G+P   I GF N +  L     KE    +     D
Sbjct: 4   LTIIDTFGFLFRNFYALPPLKSKK-GIPTGMITGFMNFIASL----GKEFPTDYVVFTLD 58

Query: 67  YPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                TFR EI+ DYKANRP+ PE L  QLP+     +  G   IE+ GFE+DDIIA+  
Sbjct: 59  SKEKDTFRKEIFKDYKANRPEAPEDLKVQLPIAIGLIKEMGFKMIEMPGFESDDIIASLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             A  +G  V I+S DKD+ QL+      ++D +K+ +I+ E   +K+G+ P+     QA
Sbjct: 119 KKAANDGIKVKIVSHDKDMYQLIDDDKIVIFDPIKKIEINEEKCKEKFGVHPKYFKDFQA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+ GIG KTAA L+ EY NLENI  N  +IK   +++ ++E  E A LSR
Sbjct: 179 LVGDSSDNIPGVKGIGVKTAAKLINEYKNLENIYENIDKIKGALQKK-LIEGKENAFLSR 237

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA------LEFTKLINRV 288
           +LV L+TD+      E++ LE+   P +   LK       L+ T +I+RV
Sbjct: 238 ELVTLKTDL-----FENINLEEFKYPEINPILKVADKLIDLDITSVIDRV 282


>gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
 gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
          Length = 933

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 177/538 (32%), Positives = 284/538 (52%), Gaps = 36/538 (6%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H++K     L   G ++ G   D  L +Y+    + S+D+A +A + L    K  L+
Sbjct: 406 KVAHDVKGPSHALLARGWTLAGVVLDTALAAYLCRPDQRSYDLADLAVRHL----KRELR 461

Query: 523 SRKSSIPIDKISDSQV----------------QEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  S+   D   D Q+                 E  +  +  I +L  +L  +L      
Sbjct: 462 AEGSTGGADADVDEQLTLDGSDGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGT 521

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +   ++ P++ V++  E  GI +D +LL  + A  ++ +   +   Y++ G + NL SP
Sbjct: 522 RLLHEVELPLVAVLAAQERVGIAVDDELLADLEARFAERVAQAQAQAYEVIGTEINLGSP 581

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYA 685
           KQL  +LF +L  P   +TKTG + T A  L  +    ++P + ++LE R  S+++ T  
Sbjct: 582 KQLQTVLFEQLDMPKTKRTKTG-YTTDADALAALFVKTEHPFLAHLLEHRDASRLRQTV- 639

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK- 744
           + L   +     R+HT Y      TGRL+S +PNLQNIPI+T+ G++IR AF+  P    
Sbjct: 640 EGLRKSVAD-DGRIHTTYQQMIAATGRLSSTDPNLQNIPIRTEEGRRIREAFVVGPDAGA 698

Query: 745 ------LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
                 L++ADYSQIE+RI+AH++    L   F +  D+HR V + +FGV    V+P+MR
Sbjct: 699 GDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVGSRVFGVAPVDVTPEMR 758

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
              K +++ + YG+S F L+ QL+I   EA D +  YF RF G+ +Y+       R+ G+
Sbjct: 759 AKIKAMSYGLAYGLSAFGLSNQLKISTEEAKDLMDEYFQRFGGVRDYLHGVVEEARRTGW 818

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
            ETI GRR +  ++ S     R + ER A+NAPIQGSAADI + AM+ +   L +  L +
Sbjct: 819 TETIMGRRRYLPDLASDNRQRREMAERMALNAPIQGSAADIIKVAMLDLDAGLREAGLRS 878

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ++LLQ+HDELV EV   E     +++  +M  A     +L VPL V++ V  +W E  
Sbjct: 879 RLLLQVHDELVLEVARGEREPLEELVRATMAGAA----DLAVPLDVSVGVGRSWHEAG 932



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/293 (38%), Positives = 165/293 (56%), Gaps = 10/293 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAFYA P+ +     G P NA+ GF +ML  LL++       +HFAV F
Sbjct: 32  LLLIDGHSMAYRAFYALPVQNFATTTGQPTNAVYGFTSMLINLLRDEDP----THFAVTF 87

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR E+Y DYK  R K P+    Q+ LV+    A  +P +EI+G+EADD+IAT T
Sbjct: 88  DVSRASFRTEVYADYKGTRTKSPDEFRGQVDLVKEVLAALRVPVVEIEGYEADDVIATLT 147

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             A  +GF V I S D+D  QLV P  T LY    V E  ++  E V  K+G+PPE+   
Sbjct: 148 EQAVAQGFDVLISSGDRDAFQLVRPEVTVLYPVKGVSELTRMTPEAVEAKYGVPPERYPD 207

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S DN+PG+PG+G KTAA  +  Y  L+ ++ NA  IK K   E++  + ++  
Sbjct: 208 LAALVGESSDNLPGVPGVGAKTAAKWINLYDGLDGVIANADLIKGKA-GESLRAHLDSVI 266

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
            +R+L  L  D+ ++  +  L+    +  ++ +    LEF  L +R+  T + 
Sbjct: 267 RNRRLNALVHDLTLSATIPELVRRAWDREQVHTVFDGLEFRVLRDRLFATLES 319


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 185/536 (34%), Positives = 291/536 (54%), Gaps = 15/536 (2%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502
           TLT+   + L+ +  +E   K  H+ K   L L   G+ +RG   D  L +Y+   G+ +
Sbjct: 373 TLTEADETALRAWLGDESRPKAVHDAKGPMLALWAQGMELRGLTCDTALAAYLAMPGQRT 432

Query: 503 HDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDS--QVQEHAIENSNVILQLWLLLRPK 559
             +  + + +L    R E     ++S+  D+  D+  ++   A+    +   L   L P+
Sbjct: 433 FLLEDLVRAYLQRELRGEAETGGQASLFDDEDDDTARELGLRALAVRELADALEAFLEPR 492

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
                  H+   ++ P++ V++++E  GI  D D    + AE    +    E  +   GE
Sbjct: 493 ----GGTHLMREVELPLVTVLAELERAGIAADGDYFSGLEAEFGAAVKQAVEAAHAAVGE 548

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FNL SPKQL +ILF +L  P   KTKTG               ++ +   +L  R  +K
Sbjct: 549 QFNLGSPKQLQEILFVRLNLPKTKKTKTGYTTDADALAWLAAQTEHELPTIMLRHRDQAK 608

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI- 738
           +K T  + L   I     R+HT ++     TGRL+S +PNLQNIPI+T  G++IR+ F+ 
Sbjct: 609 LKVT-VEGLVKEIAD-DGRIHTTFNQIVAATGRLSSEKPNLQNIPIRTVEGRRIRQGFVV 666

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
            P  + L++ADYSQIELRI+AH++    L   FE+  D H+  AA +F +  E+V+ +MR
Sbjct: 667 GPGYETLLTADYSQIELRIMAHLSGDESLIAAFESGHDFHKTTAARVFDIEPEQVTGEMR 726

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
              K +N+ + YG+S F LA QL IP  EA    + YF  F G+ +++       RQ+GY
Sbjct: 727 AKIKAMNYGLAYGLSDFGLAGQLNIPVQEAKALKEEYFEEFGGVRDFLNAIVAQARQDGY 786

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
            ETI GRR +  ++NS     R + ER A+NAPIQGSAADI + AM++V  ++++  L +
Sbjct: 787 TETIMGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVQSAVKEAALGS 846

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +MLLQ+HDELVFEV   E+ T  +++   M  A     +LRVPL+V++ V   W++
Sbjct: 847 RMLLQVHDELVFEVAPGELETLRELVTDRMNAA----YSLRVPLEVSVGVGRTWED 898



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 158/303 (52%), Gaps = 15/303 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAFYA P  +     G   NA+ GF +ML  +L++ +     +H AV F
Sbjct: 13  LLLLDGHSLAYRAFYALPEENFSTTTGQTTNAVFGFTSMLVNVLRDEQP----THVAVCF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y DYKANR   P+    Q+ L+     A  +P + + G+EADD+IAT  
Sbjct: 69  DRSEPTFRHEEYADYKANRSASPDSFRSQMSLIYEMLDALRVPHLSLAGYEADDLIATLA 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTV---KEEKIDIEHVIKKWGIPPEKMVC 181
             A  +   V +++ D+D +QLV    T L   V      +   E V++K+ + P +   
Sbjct: 129 TQAAGQDMNVLVVTGDRDALQLVDDRVTVLMTRVGISNMTRFTPEAVLEKYELTPAQYPD 188

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A+ GDS DN+  IPG+G KTAA  ++E+G+LE ++     +K K   + + ++ +   
Sbjct: 189 FAAIRGDSSDNLKNIPGVGEKTAAKWIREFGSLEELVNRIDEVKGKV-GDKLRDHLDQVL 247

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANIE 300
           ++R+L  L  DVP+   +  L +   +   +   L  LEF  +L +R+  T     A+ E
Sbjct: 248 MNRRLTQLMRDVPLEREVSALTIGQGDREEINKILDTLEFRGELRDRLFKTL----ASAE 303

Query: 301 PVV 303
           P V
Sbjct: 304 PEV 306


>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
 gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
          Length = 939

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 293/537 (54%), Gaps = 19/537 (3%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503
           LT +  + L ++  +    K  H++K     L   G ++ G   D  L +Y+   G+ S 
Sbjct: 408 LTPDDEAALGEWLADPAVPKASHDVKAVLHALRGRGWTLAGLTSDTALAAYLAKPGQRSF 467

Query: 504 DIASIAQKWLSYTRKEIL------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           D+A +A   L Y R+E+         + S +  ++ +D    +  +  ++ + +L   L 
Sbjct: 468 DLADLA---LRYLRRELAMEGAPADGQLSLLGGEEEADRAHADAEMVAASAVAELADALG 524

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            +L  ++   +   L++P+  V++ +E  GI +D+  L+ + AE +  +    ++ Y + 
Sbjct: 525 AELAEKEQNGLLLELEQPLAFVLADLEAAGIAVDRANLESLEAEFAGQVAQAAQDAYAVI 584

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQ 676
           G++ NL SPKQL  +LF +L  P   +TKTG + T A  L  +     +  ++++L  R 
Sbjct: 585 GKEINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADALAGLFEQTGHEFLQHLLLHRD 643

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            +++K T  D L   I     R+HT YS     TGRL+S EPNLQN+PI+T  G++IR A
Sbjct: 644 ATRLKVTV-DGLLKSIAA-DGRIHTTYSQTIAATGRLSSTEPNLQNVPIRTAAGRRIRTA 701

Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           F+      +L++ADYSQIE+RI+AH+++   L + F +  D H   A+++FGV+   VSP
Sbjct: 702 FVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQRDFHSETASKVFGVDAADVSP 761

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + R   K +N+ + YG+S F L+ QLRI   EA   +  YF  F G+ +Y+    +  R+
Sbjct: 762 EQRAKIKAMNYGLAYGLSAFGLSGQLRISTEEARGLMDDYFETFGGVRDYLRSIVDVARK 821

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           +GY  T+ GRR +  ++ S     R + ER A+NAPIQGSAADI + AM+ VH +L+   
Sbjct: 822 DGYTATMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLRVHAALQAEG 881

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L ++MLLQ+HDELV EV + E      ++   M  A      L VPL+V++    +W
Sbjct: 882 LRSRMLLQVHDELVLEVADGERDAVDALVRREMAAAH----ELSVPLEVSVGYGASW 934



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 151/294 (51%), Gaps = 16/294 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  YRAF+A P  + R   G   NA+ GF +ML  LL++ +     +H AV 
Sbjct: 35  RLLLLDGHSLAYRAFFALPAENFRTGTGQTTNAVYGFTSMLINLLRDEQP----THLAVA 90

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y DYKANR   P+    Q+ L++    A  IP   ++G+EADDIIAT 
Sbjct: 91  FDVSRRTFRSERYADYKANRTTTPDDFRGQVDLIKEVLGALNIPVFAVEGYEADDIIATL 150

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMV 180
           T  AE +GF V I + D+D  QLV+   T LY         +ID   V  ++G+ PE+  
Sbjct: 151 TTQAEADGFQVLITTGDRDAFQLVTENVTVLYPKRGVSDLGRIDPAEVDNRYGLTPEQYP 210

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYA 237
              AL GD  DN+P IPG+G KTAA  ++E+G+L  +      +K K     R N+    
Sbjct: 211 DFAALRGDPSDNLPSIPGVGEKTAAKWVREFGSLAELTDRVDEVKGKAGDALRANL---- 266

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
               L+R+L  L  DV +      L +   +   +      LEF  L  R+ +T
Sbjct: 267 ANVLLNRQLTELVRDVTLDASPADLEVRPWDRDAVHRLFDELEFRVLRERLFST 320


>gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH]
 gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH]
          Length = 872

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 189/515 (36%), Positives = 297/515 (57%), Gaps = 31/515 (6%)

Query: 465 IGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEI 520
           IGHN+K+D  +L +YG+ +     D M+++++LD   S   + S+A+++L +     KE+
Sbjct: 382 IGHNLKFDFKMLKKYGLEIPTPHADTMILAWILDPD-SPVGLDSVAKRYLDHQNIKFKEV 440

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           +  RK+   +D     +  ++A E++ + L+L+ +L+ KL  E    + E ++ P I+++
Sbjct: 441 IGKRKNFSEVDI---QEAAKYAAEDALISLKLYEILKEKLWEEVKWDI-ENIEMPFINLL 496

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             +E  GI++D + ++++  E ++ L +L + IY  +G +FN+ S KQL  ILF  LK P
Sbjct: 497 IDIESQGIKLDIEYMQKLQTETTEKLENLTQEIYRYAGSEFNIKSTKQLAHILFEVLKLP 556

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR-TQRV 699
              KTKTG + T  + L  +  G +PII+ +LE+R+L K+ STY   L  +  K    ++
Sbjct: 557 VKRKTKTG-YSTDEKVLTSLK-GTHPIIEKLLEYRKLDKLLSTYIIPLQEYAKKDPNHKI 614

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           +T +    T TGRL+S  PNLQNIP  TD+   IR AF++   K+ +S DYSQIELR+LA
Sbjct: 615 YTNFLQTGTATGRLSSKNPNLQNIPTSTDIN--IRDAFVA--EKEFVSLDYSQIELRLLA 670

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H +K   L   F    DIH   A +IFG N  K   + R  AK+INF +IYG+ P +L+ 
Sbjct: 671 HFSKDEHLINAFLEDKDIHLETAVKIFGENRAK---EYRPVAKSINFGLIYGMGPKKLSE 727

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            + +   EA ++I++YF  FP +  ++E TK   R+ GYVET+  RR  +D   +   ++
Sbjct: 728 TINVSTKEAKEFIEKYFASFPTVKTFLENTKIEAREKGYVETLLKRRRFFDFAAANARTL 787

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
            N  ER A+N   QGSAADI ++AMI + +         KMLLQIHDEL+FE+   +   
Sbjct: 788 ANF-EREAVNTIFQGSAADIIKKAMIEIKQRFP----KAKMLLQIHDELIFEIDSRDEAY 842

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + I+ ++ K       L VPLKV I     W E
Sbjct: 843 EYKKIMQNVFK-------LEVPLKVGISFGKRWGE 870



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 196/384 (51%), Gaps = 42/384 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F++R FYA P L  K  G P   I GF N +  L ++   + I      +  
Sbjct: 3   LTIIDTFGFLFRNFYALPPLKSKK-GFPTGMITGFLNFVASLGRDFETDYIV---FTLDS 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR EI+ DYKANRP+ PE L  QLP+        G   +EI G+E+DDIIA+   
Sbjct: 59  KEKDTFRKEIFKDYKANRPEAPEDLKTQLPVAIELINEMGFKMLEIPGYESDDIIASLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           +A  +G  V I+S DKD+ QL+      ++D +K+ +I+    I+K+G+ P+  +  QAL
Sbjct: 119 LAASQGIKVKIVSHDKDMYQLIDDDKIVIFDPIKKVEINEAKCIEKFGVHPKDFINFQAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ G+G KTAA L+ +Y  LEN+  +   IK   +++ +L   E A LSR+
Sbjct: 179 VGDSSDNIPGVKGVGVKTAAKLINQYKTLENLYDHIDEIKGALQKK-LLADKENAFLSRE 237

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKA------LEFTKLINR-------VATTY 292
           LV L+TD+      +++ LE+   P +   LK       L+ T ++ R       V T  
Sbjct: 238 LVTLKTDL-----FDNINLEEFKYPEINPILKVADKLIDLDITSILERVKKDGLYVKTKM 292

Query: 293 DCDAANIEPVVLD--------INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK---- 340
             +    + V+++        I+  E+K +A +TE D         FS   ++       
Sbjct: 293 PDNQVKFDAVLIENEKELFEIIDKIEDKIVAFDTETDSLENPNIVGFSFAYEKNKAYYVP 352

Query: 341 IN------SEQTPQKLFLERLQKL 358
           IN      ++Q P+K  L+ +QK+
Sbjct: 353 INHFYLGVTDQIPEKTALKAIQKI 376


>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
          Length = 908

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 177/513 (34%), Positives = 293/513 (57%), Gaps = 25/513 (4%)

Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----- 521
           KL +H   ++ RG+       D  L +Y++  G+ S  +  ++   L Y R+E+      
Sbjct: 403 KLAMHD--LAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLS---LRYLRRELRAENPE 457

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           + + S +     +D Q  +  +  +  +L L   L  +L       +   ++ P+  V++
Sbjct: 458 QQQLSLLDDTDGTDDQAVQTLLLRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLA 517

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI +D +LL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L+ P 
Sbjct: 518 GMENAGIAVDLELLTELQSDFAHLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELEMPK 577

Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             +TKTG + T A  L+ + +   +P ++++L  R  +++K T  D L N +     R+H
Sbjct: 578 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 634

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T ++     TGRL+S EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+A
Sbjct: 635 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYSELMTADYSQIEMRIMA 694

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++K   L + F    D+H  VA+  FGV IE+V+ ++RR  K +++ + YG+S + L+ 
Sbjct: 695 HLSKDEGLIEAFNTGEDLHSFVASRAFGVPIEEVTAELRRRVKAMSYGLAYGLSAYGLSA 754

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA D +++YF RF G+ +Y+       R++GY  T+FGRR +  E++S    +
Sbjct: 755 QLKISTEEAKDQMEQYFARFGGVRDYLMAVVEQARKDGYTSTVFGRRRYLPELDSSNRQV 814

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI   K+++D  L++++LLQ+HDEL+FEV   E   
Sbjct: 815 REAAERAALNAPIQGSAADIIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQ 874

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              +    M  A      L VPL+V++    +W
Sbjct: 875 LEALARDKMGGAY----PLDVPLEVSVGYGRSW 903



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 166/307 (54%), Gaps = 14/307 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q    L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H
Sbjct: 17  QTRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTH 72

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR+E YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+
Sbjct: 73  IAAAFDVSRQTFRSERYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 132

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPP 176
           IAT    AE EG+ V +++ D+D +QLVS   T LY    V E  +   + V++K+G+ P
Sbjct: 133 IATLATQAENEGYRVLVVTGDRDSLQLVSENVTVLYPRKGVSELTRFTPDAVVEKYGLTP 192

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++ N   ++ K   + + E+
Sbjct: 193 TQYPDFAALRGDPSDNLPGIPGVGEKTASKWIGEYGSLQALVDNVDSVRGKV-GDALREH 251

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +   +R+L  L  DVP+    + L L+  +  ++      LEF  L +R+  T     
Sbjct: 252 LASVIRNRELTDLVKDVPLAQTPDTLRLQPWDRDQIHRLFDDLEFRVLRDRLFETL---- 307

Query: 297 ANIEPVV 303
           A +EP V
Sbjct: 308 AAVEPEV 314


>gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 908

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 173/514 (33%), Positives = 283/514 (55%), Gaps = 14/514 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G ++ G   D  L +Y++  GR S D+ ++    L Y  +E+  
Sbjct: 401 KVFHNAKSAMRVFAEHGWTVEGVGMDTALAAYLVKPGRRSFDLDALT---LEYLGRELAP 457

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +  +   +   +D   +  A+   +  IL L      +L       +   ++ P   +++
Sbjct: 458 AATADGQLAFGADEGAEADALMVQARAILDLGAAFGERLEEVGAAGLLRDVELPTSALLA 517

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI  D+  L+ +    +  +    +  +  +G +FNL SPKQL ++LF +L  P 
Sbjct: 518 RMERHGIAADRPHLEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELGLPK 577

Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             +TKTG + T A  L  +    DN +   +L  R+ +K++ T  + L   I     R+H
Sbjct: 578 TKRTKTG-YTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIH 634

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T +S     TGRL+S +PNLQN+P++TD G+ IRR F+     + L++ADYSQIELR++A
Sbjct: 635 TSFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMA 694

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + F +  D+H   AA++FGV    V  +MRR  K +++ + YG+S F L+ 
Sbjct: 695 HLSEDEGLIEAFTSGEDLHTTAAAQVFGVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ 754

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I   EA   I  YF RF G+ +Y+ +  +  R+ GY  T+FGRR +  ++NS     
Sbjct: 755 QLNIEAGEARALIDAYFERFGGVRDYLRRVVDEARETGYTATLFGRRRYLPDLNSDNRQR 814

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER A+NAPIQG+AADI + AM++V ++L++  LA++MLLQ+HDE+V E+   E   
Sbjct: 815 REAAERMALNAPIQGTAADIVKIAMLNVGRALDEAGLASRMLLQVHDEIVLEIAPGERDR 874

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             Q++ H M  A    ++LR PL V++    +W+
Sbjct: 875 TEQLLRHEMADA----VHLRAPLDVSVGHGPDWE 904



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/255 (40%), Positives = 147/255 (57%), Gaps = 12/255 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 20  LMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 75

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E + +YKANR K P+    Q+ L+     A       + GFEADDIIAT  
Sbjct: 76  DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELLGELLDAMHAVRFAVDGFEADDIIATLA 135

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EGF V I++ D+D  QLVS  TT LY T  V E  +   E V +K+G+ P +   
Sbjct: 136 TQAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPD 195

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+  +++     +K K   +N+ ++ E  +
Sbjct: 196 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFADLVERVEEVKGKA-GQNLRDHLEAVK 254

Query: 242 LSRKLV-MLRT-DVP 254
           L+R+L  M+RT D+P
Sbjct: 255 LNRRLTEMVRTVDLP 269


>gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 879

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 192/583 (32%), Positives = 299/583 (51%), Gaps = 37/583 (6%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           DT  A  S P+ + ++ +D    T   + T      V  + D      LT+ + S   KF
Sbjct: 322 DTNSAHGSAPLGLTVAIVDGTV-TGLGLATATETAFVPWAADRLDYVALTEWLASDAPKF 380

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515
                     H+ K    +    G+ + G   D ML  +VL  G    ++ +    +L  
Sbjct: 381 M---------HSSKAQLKIASANGLDIAGIAFDTMLAGWVLKPGGKPEELEAQVYNYLGE 431

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL----LHVYER 571
           T             ID+   +Q+       S   L  +++   + +  +L    L V   
Sbjct: 432 T-------------IDQGDPNQLVPETEALSPATLSWYVVRVAEYLAGRLDEGSLGVLTD 478

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P++ V ++ME TGI ++Q LL  +SA +++    +  N +++ G + NL SPKQL +
Sbjct: 479 IEMPLVPVFARMERTGIAVNQQLLLDLSASLTETAQEVARNAFEVIGREINLGSPKQLQE 538

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           +LFT+L+ P     KTG + T A  L  +     +P +  +L+ R  +K+       +  
Sbjct: 539 VLFTQLEMPKTRANKTG-YSTDAASLADLQEQAPHPFLNLLLQHRDATKLVQIIT-GIEK 596

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISAD 749
            I+  + RVHT Y  A + TGR+AS +PNLQN+PIKT  G++IR AF        L++AD
Sbjct: 597 AIDD-SGRVHTTYEQAGSSTGRIASNDPNLQNVPIKTATGRQIRSAFEAGAGFDTLLTAD 655

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE+RI+AH++    L Q F    D+HR V + IFGV   +V+ +MR   K +++ + 
Sbjct: 656 YSQIEMRIMAHLSGDEGLIQAFNEGEDLHRFVGSRIFGVEPAEVTAEMRTKVKAMSYGLA 715

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+S F L+ QLRI  SEA   +  YF RF  + +Y+       R +GY  TIFGRR  +
Sbjct: 716 YGLSAFGLSKQLRIETSEAKALMTDYFARFGAVRDYLRNVVEQARTDGYTTTIFGRRRPF 775

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            ++NS    +R+  ER A+N+PIQGSAADI + AM+ +   +    L ++MLLQ+HDELV
Sbjct: 776 GDLNSKNRVLRDNAERQALNSPIQGSAADILKLAMLRIDSDMRVEGLKSRMLLQVHDELV 835

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           FE+   E+   + I+   M  A     +L VPL V I   +NW
Sbjct: 836 FEIAGGELERMTTIVHERMSGAA----SLSVPLDVQIGTGHNW 874



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 155/287 (54%), Gaps = 11/287 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            ++DG S  +RAFYA P+ S +  DG   NAI GF +ML  LLQN +     +H AV FD
Sbjct: 1   MIIDGHSLAFRAFYALPVDSFQNRDGQHTNAIHGFLSMLISLLQNEKP----THLAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FR   YP+YK  R + P   + Q+PL+  A +A G+  +  + +EADDI+AT  +
Sbjct: 57  ISRYSFRTREYPEYKGTRGETPPEFVGQIPLLEEALKAMGVQTLSKEDYEADDILATLAH 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                GF V ++S D+D +Q+V+   T LY   +     ++ D + V +K+G+ P +   
Sbjct: 117 EGSHNGFRVLVVSGDRDAIQMVNDDVTLLYPNARGVSELKRYDRDAVFEKYGVEPHQYPD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL G++ DN+ G+  +G KTA   +  YG+L+ IL +A  IK     +N+ +  + A 
Sbjct: 177 VAALVGETSDNLIGVDKVGEKTAVKWINLYGSLDEILAHADEIK-GVVGQNLRDQMDRAV 235

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +RKL  L TDV + + +  L     +   +      L+F  L+ RV
Sbjct: 236 RNRKLNHLLTDVELPVTVTALDRRPIDEAAVREVFDRLQFKTLLQRV 282


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 200/611 (32%), Positives = 323/611 (52%), Gaps = 32/611 (5%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T I + +++Q+ +Q L+     +F   T  +D    K +  + S     DD +F V    
Sbjct: 316 TLITDNEELQKVLQALKPETIVAFDTETTGLDYEKDKLVGFSFSF---NDDEAFYVPFAH 372

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--GISMRGF 486
             L V   Q S     L       +KK F ++    +GHNIK+D   + R+     +  +
Sbjct: 373 FYLGV-PDQISEKDAALA------MKKIFNSK---VVGHNIKFDLHFVSRFLNDDMLNIY 422

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D M+++++++   S+  +  ++ K L +T      + K       +      ++A E++
Sbjct: 423 SDSMILAWLINP-ESALGLDKLSDKLLDHTMLGFKDTVKKGETFASVELEDASKYAAEDA 481

Query: 547 NVILQLWLLLRPKLIVEKLLHVYER---LDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            + L+L+ L   KL ++   H+ +    ++ P I  +  ME  GI++D + L+    E+ 
Sbjct: 482 YITLKLFNLFNEKLKLQDATHLIDESQNVEVPFITTLLGMEKDGIRVDAEFLEVFLVEVK 541

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + LL+L + IY+ +G +FN++S KQLG ILF  L  P G KTKTG + T    L  +   
Sbjct: 542 ETLLNLTKTIYEQAGTEFNINSTKQLGVILFEHLGLPVGKKTKTG-YSTDENVLSSLK-D 599

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            + II ++LE+R++ K+ STY + L    +  +  R+HT +    T TGRL+S  PNLQN
Sbjct: 600 KHEIISSLLEYREIYKLYSTYIEPLLKLSLEDKEGRIHTSFVQTGTATGRLSSKNPNLQN 659

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP +T  G KIR AF++P  KKLI  DYSQIELR+LAH ++   L   F  + DIH   A
Sbjct: 660 IPARTSQGLKIREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANKDIHLQTA 719

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
             +FG   E+ +P  R  AKT+NF ++YG+   +L+  L I   EA + I++YF  FP +
Sbjct: 720 IALFG---EEEAPSKRAVAKTVNFGLLYGMGQKKLSETLGITTKEAKEIIEKYFESFPTV 776

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYD-EINSPKSSIRNINERAAINAPIQGSAADITR 901
             Y     +  ++ GYVET+  RR ++D E  SP    R   +R ++N+  QGSA+D+ +
Sbjct: 777 KTYFRSIVDNSKEMGYVETLLKRRRYFDYETASP--MFRAAYDRESVNSVFQGSASDLIK 834

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            +M  +   +++ KL  KMLLQIHDEL+FEV  +E           ME        L +P
Sbjct: 835 LSMNKIATVIKEEKLNAKMLLQIHDELIFEVDADEAEMLGNRFKEIMENIY----ELNIP 890

Query: 962 LKVNIKVSNNW 972
           L+ ++ + +NW
Sbjct: 891 LEASMNIGDNW 901



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 5/246 (2%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D   F +R+FYA P   +  DG P   + GF N +  L    +K+  + +     D  
Sbjct: 7   VIDTFGFFFRSFYALPQHLKNKDGFPTGLLTGFTNFISTL----QKQHDSDYLIFAIDTK 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFRNE+ P+YKANR   PE L  QLP+        G   +   GFEADD+IAT    A
Sbjct: 63  GNTFRNEVDPNYKANRTAPPEELTMQLPIAIEWIDKMGYKTLGQVGFEADDLIATVVKHA 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           +++G+ V ++S DKDL QL+      + D +K + +D +    K+G+ P++ +  Q++ G
Sbjct: 123 KEKGYNVRVVSHDKDLYQLIDDGRVVVVDAIKRKSMDEDACFLKYGVTPKQFIDYQSILG 182

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           DS DN+PG+ GIG   A  LL +YG+L+NI  N   IK    ++ + +  + A +S+ LV
Sbjct: 183 DSADNVPGVKGIGKVGAEKLLVQYGDLDNIYANIDEIKPPGIQKKLRDSQDEAYMSKVLV 242

Query: 248 MLRTDV 253
            LR D+
Sbjct: 243 TLRDDI 248


>gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 912

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 191/608 (31%), Positives = 313/608 (51%), Gaps = 36/608 (5%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  +I  W   LE  G+A+  +         ++P+ + +  +    + S      FI L 
Sbjct: 328 SAAEISAW---LEAAGTATIGLALSGQTLPLAEPVGMDVHGIGLSSEES----AAFIPL- 379

Query: 433 VHTSQDSTGKNTLTKEIL-SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIM 490
                  TG +   +++L S+LK         K  H++K     L   G+ + G  +D  
Sbjct: 380 -------TGLDEAAEQVLASWLKGSAP-----KAVHDLKSALKALSGRGLDLDGVVDDTS 427

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           + +Y++   R ++D+A ++   L              + +    D   QE A+  +    
Sbjct: 428 ISAYLIQPERRNYDLADLSLYHLETPMTVSASKDAGQLDLGLEGDDGAQE-AVLRAFATQ 486

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           +L     P L+      +   L+ P+  V+S ME+ G+ + ++ L  + A+  K + + +
Sbjct: 487 KLSSFFAPILLERNAEQLLTGLELPLARVLSGMELAGVAVSKETLDTLMADFGKTIETAQ 546

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NPIIK 669
              Y + G + NL SPKQL  +LF +L  P   K KTG + T A+ L  +     +P + 
Sbjct: 547 TEAYAIIGHEVNLGSPKQLQTVLFDELGMPKTKKIKTG-FSTDAEALADLTTKHPHPFLL 605

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            +  +R  +K++ T  + L   I   T RVHT Y+     TGRL+S  PNLQNIPI+++ 
Sbjct: 606 QLQAYRDATKLRQT-VEGLIKSIGSDT-RVHTTYAQNVAATGRLSSNNPNLQNIPIRSEE 663

Query: 730 GQKIRRAFI-----SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           G++IR AF+     +   + L++ADYSQIE+RI+AH++    L Q F++  D+HR V + 
Sbjct: 664 GRRIRGAFVVGQKSTKSYETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHRFVGSH 723

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           IF V  ++V+  MR   K +++ ++YG+S F L+ QL I   EA   +K YF RF  + +
Sbjct: 724 IFNVEPQEVTSAMRSKVKAMSYGLVYGLSSFGLSKQLNISVDEARTLMKDYFDRFGAVRD 783

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+       R +G+ ETI  RR +  E+ S    +R ++ERAA+NAPIQGSAADI +RAM
Sbjct: 784 YLRGVVEQARLDGFTETIESRRRYLPELTSDNRQLREMSERAALNAPIQGSAADIIKRAM 843

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           + V   + +  L ++MLLQ+HDELVFEV E E+     +++  M  A     NL VPL V
Sbjct: 844 LGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQALVIAQMAVAA----NLTVPLDV 899

Query: 965 NIKVSNNW 972
            + +  +W
Sbjct: 900 QVGIGKSW 907



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 156/296 (52%), Gaps = 10/296 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P  +   D G   NA+ GF +ML  +++  +     SH AV F
Sbjct: 21  LLVLDGHSMAFRAFYALPPETFVTDTGQHTNAVHGFTSMLLTMIRQQKP----SHVAVAF 76

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+  Y +YKA R K PE    Q+ L+    +A  +P I I GFEADDIIAT  
Sbjct: 77  DLDTPTFRSVEYTEYKAGRSKTPEEFYGQIDLIIKVMEAMNVPTISIDGFEADDIIATVA 136

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT-CLYDTVKEEKI---DIEHVIKKWGIPPEKMVC 181
             +E  G+   ++S D+D  QL++  T  LY       I   D   +  K+ + P++   
Sbjct: 137 SQSEAAGWQTLVVSGDRDAFQLITDNTFVLYPKKGISDIPPMDAAAIEAKYFVRPDQYSD 196

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G++ DN+PG+PG+G KTAA  + +Y  L  IL N   I   K  +++ E+ ++ +
Sbjct: 197 LAALVGETADNLPGVPGVGPKTAAKWINQYDGLAGILENIYAIG-GKVGDSLREHVDSVK 255

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            +R+L  L  D+ + + LE + L+  +  ++      L+F  L  R+   +  D A
Sbjct: 256 RNRRLNHLLRDLDLPVTLEQMELQHPDREKIEELFDELQFNTLRKRLFDLFGEDEA 311


>gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 912

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 183/540 (33%), Positives = 289/540 (53%), Gaps = 23/540 (4%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIA 509
           + L +F  +    K+  + K     L   G+++ G   D  L  Y+    + S+D+ ++ 
Sbjct: 377 AVLARFLSDTDRPKLVADAKGSWHALSARGLTLDGVIADPSLAGYLCRPEQRSYDVETLT 436

Query: 510 QKWLSYTRKEILKS----------RKSSIPIDKI-SDSQVQEH--AIENSNVILQLWLLL 556
           Q+WL      + +S           +S+  ++ + SD+    H  +   + V+L L ++L
Sbjct: 437 QRWLGIDLAAVDESGAQANDGPGESQSAFDLEALTSDAVPATHMASARRAAVLLPLQVVL 496

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
             ++     + ++  L+ P+   ++ ME  GI +D  +L     E+   +    E  Y  
Sbjct: 497 DEQMAARDAVGLFTDLEMPVAATLTVMEDAGIAVDDAVLAARETELDARVTHAAEGAYAA 556

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWR 675
           +G + NLSSPKQL  +LF +LK P   KTKTG + T A  L  +     +P ++++LE R
Sbjct: 557 AGRELNLSSPKQLQAVLFDELKMPKTRKTKTG-YTTDADALAGLYAKTSHPFLEHLLEHR 615

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
              K++ T  + L   I     R+HT +      TGRL+S +PNLQNIP + + G +IR 
Sbjct: 616 DAIKLRQTV-EGLRKAIQA-DGRIHTTFQQTIAATGRLSSTDPNLQNIPARHEEGMRIRE 673

Query: 736 AF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           AF +      L++ADYSQIE+RI+AH++    L + F +  D+HR VAA + G+ +  V+
Sbjct: 674 AFTVGEGYDCLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIEVGDVT 733

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            Q R H K +++ + YG+S F LA QL I  +EAAD    YF RF  +H+Y+E      R
Sbjct: 734 AQQRSHVKAMSYGLAYGLSTFGLARQLGIDNAEAADLRNAYFARFGKVHDYLESVVEQAR 793

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           ++GY ET+FGRR +  ++ S     R + ERAA+NAPIQGSAADI ++AMI V  +L + 
Sbjct: 794 RDGYTETMFGRRRYLPDLTSDNRQRREMAERAALNAPIQGSAADIVKKAMIDVDGALTEQ 853

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            L++++LLQIHDEL+ EV   E      ++   M  A      L VPL V +     W+E
Sbjct: 854 GLSSRILLQIHDELLIEVAPGEAAAVESLLKEQMGGAA----ELSVPLDVAVGRGQTWRE 909



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 147/278 (52%), Gaps = 11/278 (3%)

Query: 17  YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           +RAFYA P+ +     G   NA+ GF +M   LL N +     +H AV FD P  TFR E
Sbjct: 3   FRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLDNEQP----THMAVAFDLPGGTFRTE 58

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
            Y +YK  R + P+  L Q+ L++   +A G+  +   G+EADDI+AT    A+ EG  V
Sbjct: 59  EYAEYKGTRDETPQPFLGQVELIQEVLEAMGVKTLTAPGYEADDILATLAVSAQAEGMEV 118

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
            I S D+D  Q V+    +   VK      ++    V +++G+ PE+   L AL G++ D
Sbjct: 119 LICSGDRDSFQTVTEQCTVLYPVKGVSTLRRMTPHEVEERYGVTPERYPHLAALVGETSD 178

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
           N+PG+PG+G KTAA  L  Y  L+ ++ +A +IK K   +++ ++ +    +R+L  L T
Sbjct: 179 NLPGVPGVGPKTAAKWLNLYDGLDGVIAHADQIKGKA-GQSLRDHLDDVVRNRRLNRLLT 237

Query: 252 DVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           D+ +  +P   L L   +   L    + LEF  L  R 
Sbjct: 238 DLDLGVVPRTDLRLPGADRAGLARVFETLEFRTLHQRA 275


>gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411]
 gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411]
          Length = 801

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 168/428 (39%), Positives = 259/428 (60%), Gaps = 10/428 (2%)

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            IL+ +  LR  +    L  +  +++ P+ +V+  ME  GI+ID + L     E++  L 
Sbjct: 381 AILESYPFLREYIEGNNLNFLLSQVETPLSEVLVSMEKRGIKIDSEYLTSFENELANKLY 440

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           + E+ I+ L+GE+FN++S K+L  ILF KL      KTKTG + T ++ L Q+      I
Sbjct: 441 ATEKQIHALAGEEFNINSTKELQRILFEKLGIKPIKKTKTG-YSTDSESL-QMLAQKYEI 498

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            + I+ +R +SK+ STY     + ++K + R+HT ++   T TGRL+S  PNLQN+P   
Sbjct: 499 AQLIITYRAISKVISTYIRPFLDKMDK-SNRLHTTFNQTLTSTGRLSSSNPNLQNLPAGD 557

Query: 728 D-LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           D L   IR++ ++P   KLI +DYSQIELR+LA ++K   L ++F+N+ DIH   A +IF
Sbjct: 558 DELHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNNEDIHTQTAVKIF 617

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV+   V   +RR AKTINF IIYG+    L+  L I + +A  +I++YF RF G+  YI
Sbjct: 618 GVHPSMVDHHLRRMAKTINFGIIYGMGYVSLSKTLNISKDKARQFIEKYFERFAGVKSYI 677

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           E T     +NG+VET FGRR ++  INS    +    +RAA+NA IQG+AADI + AM+ 
Sbjct: 678 ENTTEKATKNGFVETYFGRRRYFFNINSNNKRLAQFEKRAAVNATIQGTAADIIKIAMVK 737

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           +++ L++  L   ++LQ+HDEL+ E  E+     + I+  +ME A    +   +P+K N 
Sbjct: 738 LYEKLKN--LDAHIVLQVHDELLVEAKEDIAENVAGIVKDTMENA----VKFDIPIKTNT 791

Query: 967 KVSNNWQE 974
           K++NNW E
Sbjct: 792 KIANNWYE 799



 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 117/258 (45%), Positives = 154/258 (59%), Gaps = 13/258 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+DGSSF+YR F+A   LS K  G+P   I GF  +L +L       +  ++ A+ FD
Sbjct: 5   VYLIDGSSFLYRFFFAIRGLSYK--GMPTGTIFGFAKLLLEL-----DAANPTYIAIFFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR +I   YK NRPK+P+ L  Q+   +   +AFGIP IE+ GFEADD+IATY  
Sbjct: 58  TKAKTFREDILESYKKNRPKMPDELSIQIEPTKQLIKAFGIPIIELDGFEADDLIATY-- 115

Query: 127 IAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            AEK    F V II++DKDL QLV+    +YD  K+   D E V KK G+ PE++    A
Sbjct: 116 -AEKLKNDFEVIIIASDKDLFQLVNSNVKIYDPTKKVFYDREGVFKKLGVYPEQVADFLA 174

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDSIDNIPG+  IG KTAA LL +Y N+E IL N   +K  K +E I +  +   L R
Sbjct: 175 LVGDSIDNIPGVKSIGPKTAASLLAQYKNIEGILQNLDNLKP-KIKEAIEKEKDNLELYR 233

Query: 245 KLVMLRTDVPITIPLEHL 262
           KL +     PI I LE +
Sbjct: 234 KLTITDKKAPIKIELEAM 251


>gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 661

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 221/728 (30%), Positives = 368/728 (50%), Gaps = 91/728 (12%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + I+R++YA    P ++ K  GL  +AI GFCN L ++++        +H  V
Sbjct: 4   LFLLDAYAIIFRSYYAFIKRPTINSK--GLNTSAILGFCNTLNEIIEKEN----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FDY   TFR+E +P YKA R   PE +   +P ++   +A  IP +++ GFEADD+I T
Sbjct: 58  AFDY-GKTFRHEAFPPYKAQREATPEDIKLSVPHIQDILKAMHIPILQVNGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175
               A ++G    +++ DKD  QL+     +        YD + E++I       K+GI 
Sbjct: 117 LATQAAEKGIETYMLTPDKDYGQLIRQHVYMFRPRHGGGYDKIGEKEIQ-----AKYGIA 171

Query: 176 PEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
               V  L AL GDS DN PG PG+G KTA  L+ E+G  EN++ N+ ++K  K RE + 
Sbjct: 172 SAAQVIDLLALMGDSSDNYPGCPGVGEKTAVKLIHEFGTCENLIENSDQLK-GKMREKVE 230

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              +  ++S+ L  +RTDVPI + L+ L +   +   L      LEF +L  +       
Sbjct: 231 NAVDDIKMSKFLATIRTDVPIELNLDELKMTSPDEAELHKIFTELEFRRLAKKFL----- 285

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                           NKG   E +I  D      Q +   +  +K  SE  P+    E 
Sbjct: 286 ----------------NKG---EEKITSDNL----QLNLFEENPTKTTSE--PKFSTFES 320

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L+  S +      Y  I N ++ ++    L T    S    T +     ++ + ++ S  
Sbjct: 321 LKTTSHH------YKLIDNQEEARKLCDFLRTNKILSLDTETTSTSPMEAELVGLSFSV- 373

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL---KKFFENEHFLKIGHNIKY 471
             K+  +F          V   +D        +E L Y+   K  +E+   LK+G NIKY
Sbjct: 374 --KEKEAF---------YVAIPKDR-------EEALQYVNIFKPLYEDPEILKVGQNIKY 415

Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KS 526
           D +VL  YG+ ++G   D ML  Y++      H++  +A+  L Y     +E++  + K 
Sbjct: 416 DYVVLRNYGVDIQGKMFDTMLAHYLIQP-ELRHNMDYMAETLLHYQTMHIEELIGPKGKG 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
              +  +S  ++ E+A E++++ L+L  +L P+L       ++  ++ P++ V++ ME+ 
Sbjct: 475 QKNMRDLSPEEIYEYAAEDADITLRLKNVLEPQLKEVGAKSLFWDIEMPLVKVLADMELN 534

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKT 645
           G+ +D + L ++    ++ +   E + ++L+GE+FN+SSPKQ+G+ILF K+K      KT
Sbjct: 535 GVLLDTESLNEIERTFTERMQQYERHAFELAGEEFNISSPKQVGEILFGKMKIVDKPKKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTGQ+ T+ + L Q+     PI+++IL +R + K+  TY ++LP  IN RT  +HT ++ 
Sbjct: 595 KTGQFVTSEEVLLQLK-DKAPIVEDILNYRGMKKLLGTYVEALPKLINPRTGHIHTSFNQ 653

Query: 706 ASTMTGRL 713
           A T TGRL
Sbjct: 654 AVTATGRL 661


>gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99]
 gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99]
          Length = 899

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 180/533 (33%), Positives = 300/533 (56%), Gaps = 11/533 (2%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502
           TLT +  + L ++  +    K  H  K     L   G ++ G   D  L +Y++  G+ S
Sbjct: 369 TLTPDDDAALGEWLADPAKPKALHEAKLAIHDLRGRGWTLNGVTSDTALAAYLVRPGQRS 428

Query: 503 HDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
             +  ++ ++L    R E  + ++ S+  D  +D    + AI  +  ++ L   L  +L 
Sbjct: 429 FTLDDLSLRYLRRELRAETPEQQQLSLLDDDDTDVAAAQTAILRARAVIDLADALDAELD 488

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                 +   ++ P+  ++++ME  GI +D  +L  +    +  +    E  Y + G++ 
Sbjct: 489 RIDSTGLLTDMELPVQHLLAEMETAGIAVDLTMLGGLQRHFADQIRDAAEAAYAVIGKQI 548

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKI 680
           NL SPKQL  +LF +L+ P   +TKTG + T A  L+ + +   +P ++++L  R ++++
Sbjct: 549 NLGSPKQLQVVLFDELRMPKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDVTRL 607

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739
           K T  D L N +     R+HT ++     TGRL+S EPNLQNIPI+TD G++IR AF+  
Sbjct: 608 KVT-VDGLLNSVAD-DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVG 665

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
               +L++ADYSQIE+RI+AH+++   L + F    D+H  VA+  FGV I++V+ ++RR
Sbjct: 666 DGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRR 725

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
             K +++ + YG+S + L++QL+I   +A   + +YF RF G+ +Y+       R++GY 
Sbjct: 726 RVKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFSRFGGVRDYLMAVVEQARKDGYT 785

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T+ GRR H  E++S    +R   ERAA+NAPIQGSAADI + AMI V K+L++H L ++
Sbjct: 786 STVLGRRRHLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIEVDKALKEHALKSR 845

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDEL+FEV   E      ++   M  A      L VPL+V++    +W
Sbjct: 846 MLLQVHDELLFEVAAGEREQIEALVRDKMGSAY----PLDVPLEVSVGFGRSW 894



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 162/302 (53%), Gaps = 14/302 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H A  F
Sbjct: 13  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E YP+YKANR   P+    Q+ + +    A GI  +   GFEADDIIAT  
Sbjct: 69  DVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAPGFEADDIIATLA 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P +   
Sbjct: 129 TQAEGEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPVQYPD 188

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++     ++ K         A   R
Sbjct: 189 FAALRGDPSDNLPGIPGVGEKTASKWIVEYGSLQGLVDQVDSVRGKVGDSLRANLASVVR 248

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  DVP+    E L+L+  +  ++      LEF  L +R+  T     A +EP
Sbjct: 249 -NRELTDLVRDVPLAQTPEVLLLQPWDRDQIHRLFDDLEFRVLRDRLFDTL----AAVEP 303

Query: 302 VV 303
            V
Sbjct: 304 EV 305


>gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
 gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
          Length = 912

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 190/525 (36%), Positives = 287/525 (54%), Gaps = 37/525 (7%)

Query: 465 IGHNIKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ-----KWLSYTR 517
           IGHN+K+D  L+ H   +   G   D M++ ++ DS      IA I       KW ++T 
Sbjct: 408 IGHNLKFDLSLIFHTLELEHTGEIYDSMILGWLYDS------IAPIGLDKQMLKWFNHTM 461

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDK 574
                         +++ +   ++A E++    +L+  L     K     +L +  +L+ 
Sbjct: 462 ISFDSVVAKDENFSQVNIAAATQYAAEDAIATFRLYHRLEEVFYKREWSSILELANKLEY 521

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P I V+  ME  GI++D  LL+ +  + S+++  L   I++L GE FNL+SP+QL  ILF
Sbjct: 522 PFIKVLLAMECEGIKVDIPLLESLKEKASEHISQLSAQIFELCGETFNLNSPQQLAHILF 581

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            +L   +G   K G        L  I+   +P+I  IL++R+++K+KSTY + L    + 
Sbjct: 582 NRLGLKAGRSVKGGLSTDERTLLAIIDA--HPVIALILDYREVNKLKSTYIEPLLRFGSA 639

Query: 695 RTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             + R++T +  + T TGRL+S  PNLQNIP++ + G+KIR+AFIS     LIS DYSQI
Sbjct: 640 NDKHRIYTSFLQSGTATGRLSSKSPNLQNIPVRREEGRKIRQAFISKEGHSLISIDYSQI 699

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR+LAH  K + L + F+   DIH   AA +FGV   +++ Q R  AK+INF +IYG+ 
Sbjct: 700 ELRLLAHFCKDSSLIESFKQDKDIHFETAARLFGV---ELAAQKRAIAKSINFGLIYGMG 756

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             +LA  L+I   EA +YI+ YF  FP I  ++   K F+ +NGY +T+ G R ++D  N
Sbjct: 757 SKKLAQTLQISLKEAKNYIESYFALFPTIKNFLNAQKEFLLENGYSQTLLGHRRYFDFKN 816

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           +      N   R  IN+  QGSAAD+ + +M  +HK         KMLLQ+HDEL+FE P
Sbjct: 817 ATDFMKANF-LREGINSIFQGSAADLIKLSMCEIHKRYGHSDF--KMLLQVHDELIFEAP 873

Query: 934 EEE----ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +E+       A+QI+ H  E        L VPLK  I +  NW E
Sbjct: 874 QEKAHIYAQEAAQIMNHIYE--------LEVPLKCGISIGKNWAE 910



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 159/294 (54%), Gaps = 11/294 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L ++D   F +R+FYA P L  K +G P   + GFCN    LLQ+  K+   ++ A  
Sbjct: 2   NTLSVIDTFGFFFRSFYALPPLKNK-EGFPTGLLVGFCN----LLQSLYKDPSCTYLAFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            +      R +IY  YK NR   P+ LL QLP+     +  G   I I+G+EADD+IA+ 
Sbjct: 57  LEGGGENKRRQIYDAYKRNRQPPPQELLMQLPIAIEWIEKMGFLNISIEGYEADDVIASI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             +A  +   V IIS DKDL QL+   T +YD + +  I     + K+G+ P+  +  Q+
Sbjct: 117 NKVANAQNIVVRIISHDKDLYQLIDENTYIYDPIGKRDIREAECLYKYGVNPKNFIDYQS 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENIL-EYAETAR 241
           L GD+ DNI GI GIG K+A  L+  +G++E++    S +++    R  ++L E    A 
Sbjct: 177 LVGDTSDNIVGIKGIGAKSAQKLITHFGSIESLYERESELEEVVTPRIAHLLREGKNNAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGP--RLISFLKALEFTKLINRVATTYD 293
           LS+KLV L  D+   I L   ++ + N P  +++  LK  +   +I++V + ++
Sbjct: 237 LSKKLVTLYDDLLENIDLSKCLMPESN-PMLKILDELKKYDLKNIISKVQSPHE 289


>gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97]
 gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11]
 gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503]
 gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A]
 gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85]
 gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207]
 gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506]
 gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475]
 gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I
 gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I
 gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv]
 gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97]
 gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11]
 gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
 gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
 gi|740010|prf||2004291B DNA polymerase I
          Length = 904

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 170/497 (34%), Positives = 286/497 (57%), Gaps = 11/497 (2%)

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537
           G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E  + ++ S+  D  +D++
Sbjct: 410 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 469

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +  I  +  ++ L   L  +L       +   ++ P+  V+++ME  GI +D  +L +
Sbjct: 470 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 529

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + ++    +    E  Y + G++ NL SPKQL  +LF +L  P   +TKTG + T A  L
Sbjct: 530 LQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 588

Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + + +   +P ++++L  R ++++K T  D L   +     R+HT ++     TGRL+S 
Sbjct: 589 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 646

Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+TD G++IR AF+      +L++ADYSQIE+RI+AH++    L + F    
Sbjct: 647 EPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 706

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +  Y
Sbjct: 707 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 766

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+       R++GY  T+ GRR +  E++S    +R   ERAA+NAPIQGS
Sbjct: 767 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGS 826

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI V K+L + +LA++MLLQ+HDEL+FE+   E      ++   M  A    
Sbjct: 827 AADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAY--- 883

Query: 956 INLRVPLKVNIKVSNNW 972
             L VPL+V++    +W
Sbjct: 884 -PLDVPLEVSVGYGRSW 899



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 13/302 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H A  F
Sbjct: 17  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 72

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IAT  
Sbjct: 73  DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 132

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P +   
Sbjct: 133 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++ K         A   R
Sbjct: 193 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR 252

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  DVP+    + L L+  +   +      LEF  L +R+   +D  AA   P
Sbjct: 253 -NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGP 308

Query: 302 VV 303
            V
Sbjct: 309 EV 310


>gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08]
          Length = 920

 Score =  296 bits (759), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 174/502 (34%), Positives = 283/502 (56%), Gaps = 18/502 (3%)

Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           ++ RG+E      D  L SY+L   R SH      +  L+ T  E  ++   ++ +D  +
Sbjct: 426 LAGRGWEVAGLTCDTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAM-LDFGN 484

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           DS  +  ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+
Sbjct: 485 DSSAE--SMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDI 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ + +E  + +   +   ++ +GEK NLSSPKQL  +LF KL  P   +TK+G + T A
Sbjct: 543 LEGLRSEFDERVTRAQGAAWEAAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSG-YTTDA 601

Query: 655 QDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             L  +    ++P + ++LE R   K++ T  D L   I +   RVHT Y      TGRL
Sbjct: 602 DALAGLYEKTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHTTYMQTIAATGRL 659

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F 
Sbjct: 660 SSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFR 719

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +
Sbjct: 720 SGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELM 779

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPI
Sbjct: 780 AGYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPI 839

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV ++E     QI+  +M  A 
Sbjct: 840 QGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHA- 898

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L VPL V+I V  +W E
Sbjct: 899 ---MELSVPLTVSIGVGRSWFE 917



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 162/317 (51%), Gaps = 14/317 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ S     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 37  LMVLDGHSMAFRAFYALPVESFTTSTGQHTNAVHGFIAMLINLLRNEKP----THVAVAW 92

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR   Y +YKA R   P     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 93  DLAGGIFRTTEYSEYKAGRAATPPEFPGQIDLIKEVLDALHIAHLSKENYEADDILATLS 152

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  + V +K+ +PP +   
Sbjct: 153 TRATAEGFKSLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPKTVEEKYLVPPARYPE 212

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S DN+PG+PG+G KTA   L  Y  LEN++  A  +K K   +++ ++ +   
Sbjct: 213 LAALVGESADNLPGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSLRDHLDDVV 271

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANIE 300
            +RKL  L  D+ + + L  L  +  +     +    LEF  L +RV A   + DA   +
Sbjct: 272 RNRKLNALVRDLDLDVTLAELARQPWDPKATRAVFDTLEFRTLWDRVRALASESDA---D 328

Query: 301 PVVLDINTTENKGIAIE 317
            VV   +T E  G A++
Sbjct: 329 EVVEADDTLEVSGTALK 345


>gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
 gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
          Length = 903

 Score =  296 bits (759), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 170/497 (34%), Positives = 286/497 (57%), Gaps = 11/497 (2%)

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537
           G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E  + ++ S+  D  +D++
Sbjct: 409 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 468

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +  I  +  ++ L   L  +L       +   ++ P+  V+++ME  GI +D  +L +
Sbjct: 469 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 528

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + ++    +    E  Y + G++ NL SPKQL  +LF +L  P   +TKTG + T A  L
Sbjct: 529 LQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 587

Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + + +   +P ++++L  R ++++K T  D L   +     R+HT ++     TGRL+S 
Sbjct: 588 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 645

Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+TD G++IR AF+      +L++ADYSQIE+RI+AH++    L + F    
Sbjct: 646 EPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 705

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +  Y
Sbjct: 706 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 765

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+       R++GY  T+ GRR +  E++S    +R   ERAA+NAPIQGS
Sbjct: 766 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGS 825

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI V K+L + +LA++MLLQ+HDEL+FE+   E      ++   M  A    
Sbjct: 826 AADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAY--- 882

Query: 956 INLRVPLKVNIKVSNNW 972
             L VPL+V++    +W
Sbjct: 883 -PLDVPLEVSVGYGRSW 898



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 13/302 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H A  F
Sbjct: 16  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IAT  
Sbjct: 72  DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P +   
Sbjct: 132 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPD 191

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++ K         A   R
Sbjct: 192 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR 251

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  DVP+    + L L+  +   +      LEF  L +R+   +D  AA   P
Sbjct: 252 -NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGP 307

Query: 302 VV 303
            V
Sbjct: 308 EV 309


>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 867

 Score =  296 bits (759), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 163/443 (36%), Positives = 254/443 (57%), Gaps = 11/443 (2%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + V E     + V + L+  LR  L    L  V + ++ P  +++++MEI GI IDQ +L
Sbjct: 429 TDVGEQLGHRAWVTVALYPRLRQDLERNHLQDVLDGIEIPTQEILARMEIAGIAIDQSVL 488

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++  E            Y   G + NL+SPKQL  +LF +L  P   +TKTG + T A 
Sbjct: 489 NELITEFEAAAQQSASEAYASIGHEVNLNSPKQLQTVLFDELNMPKTKRTKTG-YTTDAD 547

Query: 656 DLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            L  +     +P ++++L  R  +K+K T        +     R+HT Y      TGRL+
Sbjct: 548 SLADLLVKTQHPFLEHLLAHRDRTKLKQTVVGL--QKVVADDGRIHTTYLQTVAATGRLS 605

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPT---KKLISADYSQIELRILAHIAKITPLYQVF 771
           S +PNLQNIP++TD G++IR  F +      + L+S DYSQIE+RI+AH++    L Q F
Sbjct: 606 SKDPNLQNIPVRTDAGRRIRSVFQAAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAF 665

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++  D+HR VA ++F V IE V+ Q R   K +++ ++YG+S + L+ QL IP  EA+  
Sbjct: 666 KDGEDLHRYVAGQVFEVPIEDVTDQQRSKVKAMSYGLVYGLSAYGLSRQLGIPTGEASAL 725

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF RF  + EY+++     R  GY ET++GRR +  ++ S +  +R + ERAA+NAP
Sbjct: 726 MDDYFARFGAVKEYLDQVVEEARGRGYTETMYGRRRYLPQLRSDRRQLREMAERAALNAP 785

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM  V  +L + +L ++MLLQ+HDE++ E+   E     +++  +M +A
Sbjct: 786 IQGSAADIMKIAMKRVDDALREAELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQA 845

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                +L VPL VN+ V  NWQ+
Sbjct: 846 A----DLSVPLDVNVGVGPNWQD 864



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 133/426 (31%), Positives = 203/426 (47%), Gaps = 16/426 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG SF YRA++A P  +     G   NA+ GF +ML  +L+N + +    H AV F
Sbjct: 6   LLLIDGHSFAYRAYFALPAENFSTSTGQTTNAVYGFLSMLLTVLENEKPD----HVAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YKA R + PE    Q+ L++   +A  IP + ++G+EADDI+AT  
Sbjct: 62  DLGRQTFRLDEYPEYKAGRARTPEDFPGQVDLIQDMLRALNIPVLTLEGYEADDILATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A   G    I S DKD  QL S T T LY      +  +   + V +K+G+ P     
Sbjct: 122 LQATDRGVTTKIASGDKDSFQLASDTVTILYPKRGVTELNRFTPQAVEEKYGVTPANYRG 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+  DN+PG+PG+G KTAA  L +YG+L+ I+ NA  I   K  E + ++ +  +
Sbjct: 182 LAALVGEKADNLPGVPGVGEKTAAKWLAKYGDLDAIIDNAEDIG-GKVGEKLRDHLDDVK 240

Query: 242 LSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            + +L  L  D+ + T PL+  + E  +   + +    LEF +L  RV   +  D   + 
Sbjct: 241 RNYRLNKLVDDLELSTNPLDTQVGEGAHLDEVTALFDQLEFRQLAERVNALFFGDVEQVP 300

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V L        G  +   +D    ++     +L D T  + S  +   + L  L + S 
Sbjct: 301 QVELP-EVVATSGADLRAWLD---AVEEPVGFALEDDTLGLASNDSAIWVDLTDLDENSF 356

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT-MDAFHSKPIAIAISTLDQKDD 419
             ++    TK V   D++  V      G    + I DT + A+   P A   S  D   D
Sbjct: 357 NALDTFISTKKVVAHDVKPQVHAWVERGFTQPRPIMDTELAAYLLAPDARGYSLADMASD 416

Query: 420 TSFKVE 425
               +E
Sbjct: 417 LGVVLE 422


>gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
 gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
          Length = 859

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 162/408 (39%), Positives = 245/408 (60%), Gaps = 9/408 (2%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSP 626
           +Y  ++ P+  V++ M  TGI +D++ ++    ++ + L  +   I   +G   FN +SP
Sbjct: 458 LYNNIEFPLAQVLADMTRTGILVDREGIEAFGVQLRQELDQVLTRIEMEAGTSDFNPNSP 517

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG +LF  +  P G KTK G W T A+ LE++   D P++++IL++R   K+ STY +
Sbjct: 518 KQLGTLLFDTMGLPHGKKTKNG-WSTDAETLEKLR--DIPLVEDILQYRACQKLNSTYVE 574

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L   I +   R+HT ++     TGRL+S  PNLQNIPI+T++G K+R  F++ P   L+
Sbjct: 575 GLLKVIGE-DGRIHTRFNQTEARTGRLSSDNPNLQNIPIRTEMGSKLRAYFVAKPGCVLV 633

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            ADYSQIELRILAH+     + + F +  DIHR  AA+I+ +  E V+P++R  AK INF
Sbjct: 634 DADYSQIELRILAHVTGDAHMQEAFLSGADIHRSTAAKIYNIRPEDVTPRLRSSAKAINF 693

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YG   + L+  + +   EA  +++ Y   FP I  Y+EKT    RQ GYV T+FGRR
Sbjct: 694 GIMYGKGAYSLSKDIGVSVKEAEAFLQTYLATFPNIDGYMEKTIADARQCGYVSTLFGRR 753

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
               E+NS   +IR   ER A N PIQG+AAD+ + AM+ V + L + K+ ++++L +HD
Sbjct: 754 RALPELNSNNHNIRASGERMARNTPIQGTAADVIKLAMVRVWRRLRNEKMESRLILTVHD 813

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+ E PE E   A+QI+   ME  C   ++  VPL  ++    NW E
Sbjct: 814 ELIVEAPEAEAEKAAQILREEME-GC---VHYAVPLSTDVHTGKNWLE 857



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 159/290 (54%), Gaps = 12/290 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S   RAFY   LL+ K DG   NAI GF N++  LL+    + +A    V FD
Sbjct: 10  LLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIFGFLNIMNSLLRECEPDEVA----VAFD 64

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E+Y  YK  R  +P+ L  Q+P+++      G   +  +G+EADDI+ T   
Sbjct: 65  LKHPTFRHEMYDGYKGTRHAMPDELAQQMPILKELLTDLGYRQVSAKGWEADDILGTLAA 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180
             E       + + D+D +QLVS TT +          K E +D++ + +K+GI P++++
Sbjct: 125 ACEARRDDCFLATGDRDSLQLVSETTTVLLATSAMGRSKTETMDLDAIHEKYGIEPKQLI 184

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIKQKKRRENILEYAET 239
            +++L GD+ DNIPG+ GIG KTA  L++ +G L+++  +  S I + ++REN+L   E 
Sbjct: 185 EVKSLMGDTSDNIPGVKGIGEKTAMTLVKNFGTLDSVYDHLDSPIIKPRQRENLLACRED 244

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           A LS  L  +RTD PI        + + N P  +  ++ LE   LI R  
Sbjct: 245 AYLSHTLGTIRTDAPIDTAEGAYKVTEGNKPAAVRLMQELEIQTLITRFG 294


>gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987]
 gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A]
 gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85]
 gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210]
 gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
          Length = 904

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 170/497 (34%), Positives = 286/497 (57%), Gaps = 11/497 (2%)

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537
           G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E  + ++ S+  D  +D++
Sbjct: 410 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 469

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +  I  +  ++ L   L  +L       +   ++ P+  V+++ME  GI +D  +L +
Sbjct: 470 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 529

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + ++    +    E  Y + G++ NL SPKQL  +LF +L  P   +TKTG + T A  L
Sbjct: 530 LQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 588

Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + + +   +P ++++L  R ++++K T  D L   +     R+HT ++     TGRL+S 
Sbjct: 589 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 646

Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+TD G++IR AF+      +L++ADYSQIE+RI+AH++    L + F    
Sbjct: 647 EPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 706

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +  Y
Sbjct: 707 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 766

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+       R++GY  T+ GRR +  E++S    +R   ERAA+NAPIQGS
Sbjct: 767 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGS 826

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI V K+L + +LA++MLLQ+HDEL+FE+   E      ++   M  A    
Sbjct: 827 AADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAY--- 883

Query: 956 INLRVPLKVNIKVSNNW 972
             L VPL+V++    +W
Sbjct: 884 -PLDVPLEVSVGYGRSW 899



 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 161/302 (53%), Gaps = 13/302 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H A  F
Sbjct: 17  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 72

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IAT  
Sbjct: 73  DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 132

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+PP +   
Sbjct: 133 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLPPGQYPD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++ K         A   R
Sbjct: 193 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR 252

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  DVP+    + L L+  +   +      LEF  L +R+   +D  AA   P
Sbjct: 253 -NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGP 308

Query: 302 VV 303
            V
Sbjct: 309 EV 310


>gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 174/502 (34%), Positives = 283/502 (56%), Gaps = 18/502 (3%)

Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           ++ RG+E      D  L SY+L   R SH      +  L+ T  E  ++   ++ +D  +
Sbjct: 389 LAGRGWEVAGLTCDTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAM-LDFGN 447

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           DS  +  ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+
Sbjct: 448 DSSAE--SMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDI 505

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ + +E  + +   +   ++ +GEK NLSSPKQL  +LF KL  P   +TK+G + T A
Sbjct: 506 LEGLRSEFDERVTRAQGAAWEAAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSG-YTTDA 564

Query: 655 QDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             L  +    ++P + ++LE R   K++ T  D L   I +   RVHT Y      TGRL
Sbjct: 565 DALAGLYEKTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHTTYMQTIAATGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F 
Sbjct: 623 SSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFR 682

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +
Sbjct: 683 SGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELM 742

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPI
Sbjct: 743 AGYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPI 802

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV ++E     QI+  +M  A 
Sbjct: 803 QGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHA- 861

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L VPL V+I V  +W E
Sbjct: 862 ---MELSVPLTVSIGVGRSWFE 880



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 161/316 (50%), Gaps = 14/316 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            ++DG S  +RAFYA P+ S     G   NA+ GF  ML  LL+N +     +H AV +D
Sbjct: 1   MVLDGHSMAFRAFYALPVESFTTSTGQHTNAVHGFIAMLINLLRNEKP----THVAVAWD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR   Y +YKA R   P     Q+ L++    A  I  +  + +EADDI+AT + 
Sbjct: 57  LAGGIFRTTEYSEYKAGRAATPPEFPGQIDLIKEVLDALHIAHLSKENYEADDILATLST 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            A  EGF   ++S D+D MQLV+   T LY         ++  + V +K+ +PP +   L
Sbjct: 117 RATAEGFKSLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPKTVEEKYLVPPARYPEL 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL G+S DN+PG+PG+G KTA   L  Y  LEN++  A  +K K   +++ ++ +    
Sbjct: 177 AALVGESADNLPGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSLRDHLDDVVR 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANIEP 301
           +RKL  L  D+ + + L  L  +  +     +    LEF  L +RV A   + DA   + 
Sbjct: 236 NRKLNALVRDLDLDVTLAELARQPWDPKATRAVFDTLEFRTLWDRVRALASESDA---DE 292

Query: 302 VVLDINTTENKGIAIE 317
           VV   +T E  G A++
Sbjct: 293 VVEADDTLEVSGTALK 308


>gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20]
          Length = 945

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 177/516 (34%), Positives = 280/516 (54%), Gaps = 23/516 (4%)

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----------LKS 523
            L   G+++ G   D  L  Y+    + S+D+ ++ Q+WL      +             
Sbjct: 434 ALSARGLTLDGVVADPSLAGYLCRPEQRSYDVDTLTQRWLGIDLAAVNEGGAGGDGGSGE 493

Query: 524 RKSSIPIDKISDSQVQEHAIENSN---VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            +S+  ++ ++   V    + ++     +L L ++L  +++    L ++  L+ P+   +
Sbjct: 494 SQSAFDLEALTSEAVPASHLASAGRAAALLPLQVVLDEQMVARDALGLFTDLEMPVAATL 553

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           + ME  GI +D  +L+    E+   +    E  Y  +G + NLSSPKQL  +LF +LK P
Sbjct: 554 TVMEDAGIAVDDAVLQIRQTELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMP 613

Query: 641 SGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
              KTKTG + T A  L  +     +P ++++LE R   K++ T  + L   I     R+
Sbjct: 614 KTRKTKTG-YTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQTV-EGLRKAIQP-DGRI 670

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRIL 758
           HT +      TGRL+S +PNLQNIP + + G +IR AF +    + L++ADYSQIE+RI+
Sbjct: 671 HTTFQQTIAATGRLSSTDPNLQNIPARHEEGMRIREAFTVGEGYECLMTADYSQIEMRIM 730

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L   F +  D+HR VAA + G+++E V+ Q R H K +++ + YG+S F LA
Sbjct: 731 AHLSADQALIDAFRSGEDLHRYVAALVHGIDVEDVTAQQRSHVKAMSYGLAYGLSTFGLA 790

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I  ++AAD    YF RF  +H+Y+E      R++GY ET+FGRR +  ++ S    
Sbjct: 791 RQLGIDNADAADLRNAYFARFGKVHDYLESVVEQARRDGYTETMFGRRRYLPDLTSDNRQ 850

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R + ERAA+NAPIQGSAADI ++AMI V  +L +  LA+++LLQIHDEL+ EV   E  
Sbjct: 851 RREMAERAALNAPIQGSAADIVKKAMIDVDSALTERALASRILLQIHDELLIEVAPGEAE 910

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               ++   M  A      L VPL V +     W+E
Sbjct: 911 AVENLLKEQMGGAA----ELSVPLDVAVGRGRTWRE 942



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 156/288 (54%), Gaps = 11/288 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P+ +     G   NA+ GF +M   LL N R     +H AV F
Sbjct: 25  LLLIDGHSMAFRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLDNERP----THVAVAF 80

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR E Y +YK  R + P+  L Q+ L++   +A G+ A+   G+EADDI+AT  
Sbjct: 81  DLPGGTFRTEEYAEYKGTRDETPQPFLGQVELIQQVLEAMGVTALTAPGYEADDILATLA 140

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+ EG  V I S D+D  Q V+    +   VK      ++  + V +++G+ PE+   
Sbjct: 141 TSAQAEGMEVLICSGDRDSFQTVTERCTVLYPVKGVSTLRRMTPQEVEERYGVTPERYPH 200

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G++ DN+PG+PG+G KTAA  L  Y  L+ ++ +A +IK K   +++ ++ +   
Sbjct: 201 LAALVGETSDNLPGVPGVGPKTAAKWLNLYDGLDGVIAHADQIKGKA-GQSLRDHLDDVV 259

Query: 242 LSRKLVMLRTDVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +R+L  L TD+ + + P   L L   +   L    +ALEF  L  R 
Sbjct: 260 RNRRLNHLLTDLDLGVLPRTDLRLVGADRSALARVFEALEFRTLHQRA 307


>gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 174/502 (34%), Positives = 283/502 (56%), Gaps = 18/502 (3%)

Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           ++ RG+E      D  L SY+L   R SH      +  L+ T  E  ++   ++ +D  +
Sbjct: 398 LAGRGWEVAGLTCDTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAM-LDFGN 456

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           DS  +  ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+
Sbjct: 457 DSSAE--SMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDI 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ + +E  + +   +   ++ +GEK NLSSPKQL  +LF KL  P   +TK+G + T A
Sbjct: 515 LEGLRSEFDERVTRAQGAAWEAAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSG-YTTDA 573

Query: 655 QDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             L  +    ++P + ++LE R   K++ T  D L   I +   RVHT Y      TGRL
Sbjct: 574 DALAGLYEKTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHTTYMQTIAATGRL 631

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F 
Sbjct: 632 SSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFR 691

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +
Sbjct: 692 SGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELM 751

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPI
Sbjct: 752 AGYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPI 811

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV ++E     QI+  +M  A 
Sbjct: 812 QGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHA- 870

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L VPL V+I V  +W E
Sbjct: 871 ---MELSVPLTVSIGVGRSWFE 889



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 162/317 (51%), Gaps = 14/317 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ S     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVESFTTSTGQHTNAVHGFIAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR   Y +YKA R   P     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGIFRTTEYSEYKAGRAATPPEFPGQIDLIKEVLDALHIAHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  + V +K+ +PP +   
Sbjct: 125 TRATAEGFKSLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPKTVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S DN+PG+PG+G KTA   L  Y  LEN++  A  +K K   +++ ++ +   
Sbjct: 185 LAALVGESADNLPGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSLRDHLDDVV 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANIE 300
            +RKL  L  D+ + + L  L  +  +     +    LEF  L +RV A   + DA   +
Sbjct: 244 RNRKLNALVRDLDLDVTLAELARQPWDPKATRAVFDTLEFRTLWDRVRALASESDA---D 300

Query: 301 PVVLDINTTENKGIAIE 317
            VV   +T E  G A++
Sbjct: 301 EVVEADDTLEVSGTALK 317


>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
 gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
          Length = 913

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 177/513 (34%), Positives = 290/513 (56%), Gaps = 25/513 (4%)

Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----- 521
           KL +H   ++ RG+       D  L +Y++  G+ S  +  +A   L Y R+E+      
Sbjct: 408 KLAMHD--LAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLA---LRYLRRELRAENPQ 462

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           + + S +     +D Q  +  I  +  +L L   L  +L       +   ++ P+  V++
Sbjct: 463 QQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLA 522

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI +D DLL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L+ P 
Sbjct: 523 GMEKAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQMPK 582

Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             +TKTG + T A  L+ + +   +P ++++L  R  +++K T  D L N +     R+H
Sbjct: 583 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 639

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T ++     TGRL+S EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+A
Sbjct: 640 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYAELMTADYSQIEMRIMA 699

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + F    D+H  VA+  FGV IE+V+ ++RR  K +++ + YG+S + L+ 
Sbjct: 700 HLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQ 759

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA + +  YF RF G+ +Y+       R++GY  T+ GRR +  E++S    +
Sbjct: 760 QLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQV 819

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI V K++++  L +++LLQ+HDEL+FEV   E   
Sbjct: 820 REAAERAALNAPIQGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQ 879

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              +    M  A      L VPL+V++    +W
Sbjct: 880 LEALARDKMGGAY----PLDVPLEVSVGYGRSW 908



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 167/307 (54%), Gaps = 14/307 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q    L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H
Sbjct: 22  QNRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTH 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR++ YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+
Sbjct: 78  IAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 137

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPP 176
           IAT    AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P
Sbjct: 138 IATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVVEKYGLTP 197

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++ N   ++ K   + + E+
Sbjct: 198 QQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQALVDNVDSVRGKV-GDALREH 256

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +   +R+L  L  DVP+    + L L+  +  ++      LEF  L +R+  T     
Sbjct: 257 LASVIRNRELTDLIKDVPLAQTPDTLRLQPWDRDQIHRLFDDLEFRVLRDRLFETL---- 312

Query: 297 ANIEPVV 303
           A +EP V
Sbjct: 313 AAVEPEV 319


>gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M]
 gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M]
          Length = 899

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 180/533 (33%), Positives = 300/533 (56%), Gaps = 11/533 (2%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502
           TLT +  + L ++  +    K  H  K     L   G ++ G   D  L +Y++  G+ S
Sbjct: 369 TLTPDDDAALGEWLADPAKPKALHEAKLAIHDLRGRGWTLNGVTSDTALAAYLVRPGQRS 428

Query: 503 HDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
             +  ++ ++L    R E  + ++ S+  D  +D    + AI  +  ++ L   L  +L 
Sbjct: 429 FTLDDLSLRYLRRELRAETPEQQQLSLLDDDDTDVAAAQTAILRARAVIDLADALDAELD 488

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                 +   ++ P+  V+++ME  GI +D  +L  + +  +  +    E  Y + G++ 
Sbjct: 489 RIDSTGLLADMELPVQHVLAEMETAGIAVDLTMLGGLQSHFADQIRDAAEAAYAVIGKQI 548

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKI 680
           NL SPKQL  +LF +L  P   +TKTG + T A  L+ + +   +P ++++L  R ++++
Sbjct: 549 NLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDVTRL 607

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739
           K T  D L N +     R+HT ++     TGRL+S EPNLQNIPI+TD G++IR AF+  
Sbjct: 608 KVT-VDGLLNSVAD-DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVG 665

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
               +L++ADYSQIE+RI+AH+++   L + F    D+H  VA+  FGV I++V+ ++RR
Sbjct: 666 DGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRR 725

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
             K +++ + YG+S + L++QL+I   +A   + +YF RF G+ +Y+       R++GY 
Sbjct: 726 RVKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFSRFGGVRDYLMAVVEQARKDGYT 785

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T+ GRR +  E++S    +R   ERAA+NAPIQGSAADI + AMI V K+L++H L ++
Sbjct: 786 STVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIEVDKALKEHALKSR 845

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDEL+FEV   E      ++   M  A      L VPL+V++    +W
Sbjct: 846 MLLQVHDELLFEVAAGEREQIEALVRDKMGSAY----PLDVPLEVSVGFGRSW 894



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 161/302 (53%), Gaps = 14/302 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H A  F
Sbjct: 13  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E YP+YKANR   P+    Q+ + +    A GI  +   GFEADDIIAT  
Sbjct: 69  DVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAPGFEADDIIATLA 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P +   
Sbjct: 129 TQAEGEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPVQYPD 188

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++     ++ K         A   R
Sbjct: 189 FAALRGDPSDNLPGIPGVGEKTASKWIVEYGSLQGLVDQVDSVRGKVGDSLRANLASVVR 248

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  DVP+    E L L+  +  ++      LEF  L +R+  T     A +EP
Sbjct: 249 -NRELTDLVRDVPLAQTPEALRLQPWDRDQIHRLFDDLEFRVLRDRLFDTL----AAVEP 303

Query: 302 VV 303
            V
Sbjct: 304 EV 305


>gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
 gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
          Length = 896

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 188/520 (36%), Positives = 308/520 (59%), Gaps = 31/520 (5%)

Query: 467 HNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDS----GRSSHDIASIAQKWLSYTRKEIL 521
            N KYD +++ + + I +R + D M++S++L++    G           K +S+T  +++
Sbjct: 394 QNFKYDYEIIKNNFDIELRLYADTMILSWLLNTNEKVGLDYQIDKYFDHKMISFT--DVV 451

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLW---LLLRPKLIVEKLLHVYERLDKPMID 578
           K  ++   +D     +  E+A E++ + L+L+   L +  +   E++L++   ++   I 
Sbjct: 452 KKGENFSNVDI---ERACEYAAEDALMTLRLFKKQLEIFKEKEEEEILNLAFEVEFDFIY 508

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V++ ME+ GI++D +LLK+     +KN+  L   IY  SG +FN++SPKQLG +LF  L 
Sbjct: 509 VLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQTSGAEFNINSPKQLGALLFETLG 568

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-Q 697
            P+  KTKTG + T    L  +   ++ +I  +L++R+  K++STY + L    +K    
Sbjct: 569 LPTAKKTKTG-YSTDEAVLNGL-INEHEVIPLLLQYREAYKLQSTYIEPLLELGSKSDDN 626

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+HT +    T TGRL+S  PNLQNIP K+D   +IR+AFI     KL++ DYSQIELR+
Sbjct: 627 RIHTSFLHTGTATGRLSSKNPNLQNIPTKSDSNIQIRKAFIPKDGYKLVAVDYSQIELRL 686

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH ++   L + FEN LDIH   A +IFG   E+ + + R  AK+INF ++YG+   +L
Sbjct: 687 LAHFSQDKALVEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKL 743

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
              L IP  EA  YI  YF  F  + +Y++  ++F   NGYV+T+  R+  +D  NS  +
Sbjct: 744 GETLGIPSKEAKQYIDSYFEAFKSVKDYLKSIEDFANINGYVKTLLNRKRLFD-FNSANA 802

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--- 934
            ++    R A+N   QGSAAD+ + AMI++++  +D++   K+LLQIHDELVFEV +   
Sbjct: 803 MMKAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNE-NIKLLLQIHDELVFEVKDEFV 861

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EEIT + + I+ ++ K       L VPLKV++ V ++W++
Sbjct: 862 EEITFSIKNIMENIYK-------LNVPLKVSLSVGSSWKD 894



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 147/258 (56%), Gaps = 7/258 (2%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D   F++R+++A P L +  DG P   + GF N     + N  K+    +     D  
Sbjct: 7   IIDTFGFLFRSYFALPPL-KSRDGFPTGLLTGFIN----FISNIGKDFETDYIVFALDAK 61

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFRN++Y  YKA RP+ PE LL QLP+     +  G       G+EADD++A+    A
Sbjct: 62  GETFRNKLYSQYKAQRPEAPEDLLTQLPIAISWIEKMGFKTAIRTGYEADDMVASIANDA 121

Query: 129 EKEGFAVTIISTDKDLMQLV--SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +++G  V I+S DKDL QL+  + +  L+D  K+  I+ E  I+K+G+ P +    Q+L 
Sbjct: 122 KQKGLEVRIVSHDKDLYQLIDDANSVYLFDPTKKVIINEEKCIEKYGVKPSQFTDYQSLL 181

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+ G+G KTA  L++E+G LENI  N   I++K+ +E ++E  E A LS+KL
Sbjct: 182 GDTADNIPGVKGVGAKTAESLIKEFGTLENIYANIDNIEKKRTKELLIEGKENAILSKKL 241

Query: 247 VMLRTDVPITIPLEHLIL 264
           V L  D      LE  +L
Sbjct: 242 VTLMNDCHYIDNLEEFVL 259


>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 919

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 177/513 (34%), Positives = 290/513 (56%), Gaps = 25/513 (4%)

Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----- 521
           KL +H   ++ RG+       D  L +Y++  G+ S  +  +A   L Y R+E+      
Sbjct: 414 KLAMH--DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLA---LRYLRRELRAENPQ 468

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           + + S +     +D Q  +  I  +  +L L   L  +L       +   ++ P+  V++
Sbjct: 469 QQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLA 528

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI +D DLL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L+ P 
Sbjct: 529 GMENAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQMPK 588

Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             +TKTG + T A  L+ + +   +P ++++L  R  +++K T  D L N +     R+H
Sbjct: 589 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 645

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T ++     TGRL+S EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+A
Sbjct: 646 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYAELMTADYSQIEMRIMA 705

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + F    D+H  VA+  FGV IE+V+ ++RR  K +++ + YG+S + L+ 
Sbjct: 706 HLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQ 765

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA + +  YF RF G+ +Y+       R++GY  T+ GRR +  E++S    +
Sbjct: 766 QLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQV 825

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI V K++++  L +++LLQ+HDEL+FEV   E   
Sbjct: 826 REAAERAALNAPIQGSAADIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQ 885

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              +    M  A      L VPL+V++    +W
Sbjct: 886 LEALARDKMGGAY----PLDVPLEVSVGYGRSW 914



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 167/307 (54%), Gaps = 14/307 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q    L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H
Sbjct: 28  QNRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTH 83

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR++ YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+
Sbjct: 84  IAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 143

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPP 176
           IAT    AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P
Sbjct: 144 IATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVVEKYGLTP 203

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++ N   ++ K   + + E+
Sbjct: 204 QQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQALVDNVDSVRGKV-GDALREH 262

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +   +R+L  L  DVP+    + L L+  +  ++      LEF  L +R+  T     
Sbjct: 263 LASVIRNRELTDLIKDVPLAQTPDTLRLQPWDRDQIHRLFDDLEFRMLRDRLFETL---- 318

Query: 297 ANIEPVV 303
           A +EP V
Sbjct: 319 AAVEPEV 325


>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 906

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/510 (34%), Positives = 292/510 (57%), Gaps = 19/510 (3%)

Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRK 525
           KL +H   ++ RG+       D  L +Y++  G+ S  +  ++ ++L    R E  + ++
Sbjct: 401 KLAMHD--LAGRGWTLAGVTSDTALAAYLVRPGQRSFSLEDLSLRYLRRELRAETAEQQQ 458

Query: 526 SSIPIDK-ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
            S+  D   +D Q  +  I  +  +L L   L  +L       +   ++ P+  V++ ME
Sbjct: 459 LSLLDDNDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLGGMELPVQRVLAGME 518

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
            TGI +D +LL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L+ P   +
Sbjct: 519 HTGIAVDLELLGELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQTVLFDELEMPKTKR 578

Query: 645 TKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           TKTG + T A  L+ + +   +P ++++L  R ++++K T  D L   +     R+HT +
Sbjct: 579 TKTG-YTTDADALQSLFDKTGHPFLQHLLTHRDVTRLKVT-VDGLLASVAS-DGRIHTTF 635

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762
           +     TGRL+S EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+AH++
Sbjct: 636 NQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYSELMTADYSQIEMRIMAHLS 695

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L + F    D+H  VA+  FGV I +V+ ++RR  K +++ + YG+S + L+ QL+
Sbjct: 696 RDEGLIEAFNTGEDLHSFVASRAFGVPIGEVTAELRRRVKAMSYGLAYGLSAYGLSQQLK 755

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I   EA + +  YF RF G+ +Y+    +  R++GY  T+ GRR +  E++S    +R  
Sbjct: 756 ISTEEAKEQMDAYFARFGGVRDYLMNIVDQARKDGYTSTVLGRRRYLPELDSSNRQVREA 815

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ERAA+NAPIQGSAADI + AMI V K++++  L ++MLLQ+HDEL+FEV   E      
Sbjct: 816 AERAALNAPIQGSAADIIKVAMIEVDKAIKEAGLKSRMLLQVHDELLFEVAPGERERLEA 875

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +    M  A      L VPL+V++    +W
Sbjct: 876 LAREKMGGAY----PLDVPLEVSVGYGRSW 901



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 164/307 (53%), Gaps = 14/307 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q +  L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H
Sbjct: 15  QTKPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDETPTH 70

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR+E YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+
Sbjct: 71  VAAAFDVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAEPGFEADDL 130

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPP 176
           IAT    AE EGF V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P
Sbjct: 131 IATLATQAEHEGFRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTP 190

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++ N   ++ K         
Sbjct: 191 TQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQGLVDNVDSVRGKVGDALRANL 250

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A   R +R+L  L  DVP+    + L ++  +  ++      LEF  L +R+  T     
Sbjct: 251 AGVIR-NRELTDLVKDVPLAQTPDTLRMQPWDRDQIHRLFDDLEFRVLRDRLFETL---- 305

Query: 297 ANIEPVV 303
           A +EP V
Sbjct: 306 AAVEPEV 312


>gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
 gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
          Length = 902

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/515 (33%), Positives = 288/515 (55%), Gaps = 14/515 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K+ +L     G S+ G   D  L +Y+    + S+D+  +A ++L +    +  
Sbjct: 391 KVLHDSKHARLAFAARGWSLAGVARDTELAAYLARPDQRSYDLTDLALRYL-HRELRVDA 449

Query: 523 SRKSSIPIDKISD-SQVQEHAIENSNVILQLWLLLRPKLI--VEKLLHVYERLDKPMIDV 579
                +  D + D  + +++ +  +   L L   +  +L    E+   +  +++ P+ +V
Sbjct: 450 PETGQLTFDGLGDDGEAEQNLMLQARATLDLADAIDAELSRDGEQSARLMAQVELPLSEV 509

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ M+  GI  D D L+++ A  +  + S  +  Y   G +FNL SPKQL ++LF +L  
Sbjct: 510 LAAMQRVGIAADLDYLQELEAHFAGEVKSAAQGAYAAVGREFNLGSPKQLQELLFGELGL 569

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
           P   K KTG + T A  L+ +   +  P+++++L  R ++K+K+T  D L   +++   R
Sbjct: 570 PKTKKIKTG-YTTDADALQWLYAQNPLPVLEHLLRHRDVAKLKTT-VDGLLKSVSE-DGR 626

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRI 757
           +HT +      TGRL+S +PNLQNIPI+T+ G++IRRAF+     + L++ADYSQIE+RI
Sbjct: 627 IHTTFKQTVAATGRLSSTDPNLQNIPIRTEEGRRIRRAFVVGKGFECLLTADYSQIEMRI 686

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH++    L + F +  D H   A+ +FGV + +V+   RR  K +N+ + YG+S F L
Sbjct: 687 MAHLSSDDKLIEAFNSGHDFHAATASSVFGVPVAEVTADQRRKIKAMNYGLAYGLSAFGL 746

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           + QL I   EA   +  YF  F G+ +Y+++     R +GY  TI GRR +  ++ S   
Sbjct: 747 SQQLGITAEEARGLMDNYFAGFGGVRDYLQEVVARARHDGYTSTILGRRRYLPDLVSDNR 806

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             R++ ER A+NAPIQGSAADI + AM+ V   L +  L ++MLLQ+HDELVFEV   E 
Sbjct: 807 QRRDMAERMALNAPIQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGER 866

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            T   ++   M +A      L VPL+V++    +W
Sbjct: 867 DTLEALVRSQMGEA----YPLSVPLEVSVGQGRDW 897



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 127/226 (56%), Gaps = 9/226 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H  V F
Sbjct: 8   LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THIVVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR E Y +YKA R + P     Q+ LV+    A  IP +E +G+EADD+IAT  
Sbjct: 64  DVSRHSFRTEKYAEYKAGRSETPTDFKGQVSLVKEVLAALRIPVVEKEGYEADDVIATLA 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  +G +V I + D+D  QLV  + T LY         ++D   V  K+G+ P++   
Sbjct: 124 CQARDQGMSVLITTGDRDAFQLVGDSVTVLYPRKGVSDLARMDPAAVETKYGVSPQRYRD 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           L AL G++ DN+PG+PG+G KTAA  +  YG +E ++  A  IK K
Sbjct: 184 LAALVGETSDNLPGVPGVGPKTAAKWINLYGGVEGVVARADEIKGK 229


>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
 gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
          Length = 874

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/418 (38%), Positives = 236/418 (56%), Gaps = 6/418 (1%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +L    L  + ERL+ P+I V+  ME  GI +D   L    AE++ +L  LE+ ++ L+G
Sbjct: 463 RLDTAGLTDLVERLELPLIPVLLDMERAGIGVDLRSLAAFGAEVATDLTRLEKELHTLAG 522

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
             FN  S +QLG+ILFT++      KT  G   T+   LE++  G NP++  ILE+R+L 
Sbjct: 523 HPFNPRSSQQLGEILFTEMGLTPKGKTPGGAASTSQDALERL-AGSNPLVDRILEFRKLE 581

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K++STY D LP  +     R+HT  +  +T TGRL+S  PNLQNIPI+  LG+++R  F+
Sbjct: 582 KLRSTYLDPLPK-LADADGRIHTTLNNMATATGRLSSSNPNLQNIPIRGPLGRRMRECFV 640

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P K L++ADYSQIELR+LAH++    L   F    DIH   A+ +F     ++ P  R
Sbjct: 641 AGPGKTLVAADYSQIELRVLAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDER 700

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R AKTINF ++YG+ P +L+  L I    A  +I +YF R  G+  + +      +  GY
Sbjct: 701 RQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIAKYFERLSGLSAFYDNIVESAKTQGY 760

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V T+ GRR    +I S  S + +   R AIN  +QG AADI + AM++ HK  +  +   
Sbjct: 761 VTTLAGRRRLLPDIESKNSQLASQARRQAINTVVQGGAADIIKMAMLAAHKDADLKRAGA 820

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M+LQIHDEL+ E P +    A + +   M   C   I L VPL V+    + W + +
Sbjct: 821 VMVLQIHDELLLETPMDTADAAGKRLSDLM---C-GVIKLAVPLVVDWGTGHTWGQAH 874



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/288 (34%), Positives = 149/288 (51%), Gaps = 21/288 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + +FL+DGS+F YR ++A   ++R  DG P +A+     +L+KL+    KE    H    
Sbjct: 12  DPVFLIDGSAFFYRGYHAFRDIARS-DGFPTSALFMIFRLLFKLV----KEQHPRHLVFF 66

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    +FR++IY DYKANR  +PE L  Q+  +    + FG   I  +  EADD IA+ 
Sbjct: 67  LDGRGPSFRSKIYTDYKANREAMPEPLARQVEPLLDGLRLFGARVIVPEDAEADDGIASL 126

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDIE-HVIKKWGIPPEKMVCL 182
                ++   V I+  DKDL Q +     LYD + K EK+  +     + GI P     L
Sbjct: 127 A-ARFRDRLPVVIVGADKDLKQCLDERVVLYDPSGKAEKLTTKAEFTAESGIEPASWPDL 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEY 236
           QAL GD+ DNIPG+PGIG KTA  +L+++  LE++  N   +K   R+      E++  Y
Sbjct: 186 QALVGDTSDNIPGVPGIGIKTALGILRDHPTLEDVRDNLPDLKATVRKKIEPAIEDVFTY 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
                  R+L  LRTD+   + L    L   +   L +FL++ EF  L
Sbjct: 246 -------RELTRLRTDLLPEVSLADTALTPPDAEGLRAFLESYEFRTL 286


>gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 888

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/514 (33%), Positives = 282/514 (54%), Gaps = 14/514 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           KI HN K    V   +G S+ G   D  L +Y++  GR S D+ +++   L Y  +E+  
Sbjct: 381 KILHNAKGAMRVFAEHGWSVEGVTMDTALAAYLVKPGRRSFDLDALS---LEYLHRELAP 437

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           + ++   +    D   +  A+   +  +L L      +L       +   ++ P   +++
Sbjct: 438 AAEADGQLAFGEDEGAEAEALMIQARAVLDLGEAFESRLEEVGAADLLRDMELPTSALLA 497

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI  D+  L+ +    +  +    +  +  +G +FNL SPKQL ++LF +L  P 
Sbjct: 498 RMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPK 557

Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             +TKTG + T A  L  +    DN +   +L  R+ +K++ T  + L   I     R+H
Sbjct: 558 TKRTKTG-YTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIH 614

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++A
Sbjct: 615 TTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMA 674

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + F +  D+H   A+++F V    V  +MRR  K +++ + YG+S F L+ 
Sbjct: 675 HLSEDEGLIEAFTSGEDLHTTAASQVFAVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQ 734

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I  +EA   +  YF RF G+ +Y+ +  +  R  GY  T+FGRR +  ++NS     
Sbjct: 735 QLNIEAAEARALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRYLPDLNSDNRQR 794

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER A+NAPIQG+AADI + AM++V  +L+D  L ++MLLQ+HDE+V EV   E  T
Sbjct: 795 REAAERMALNAPIQGTAADIVKIAMLNVDSALKDAGLTSRMLLQVHDEIVLEVAPGERAT 854

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           A +++   M  A    + LRVPL V++    +W+
Sbjct: 855 AEELVRREMANA----VQLRVPLGVSVGSGPDWE 884



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/254 (39%), Positives = 144/254 (56%), Gaps = 12/254 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV FD
Sbjct: 1   MLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T+R++ + +YKANR K P+    Q+ L+     A G     + GFEADD+IAT   
Sbjct: 57  VSRKTWRSQEFTEYKANRSKTPDEFKGQVDLICELLDAMGAARFAVDGFEADDVIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVCL 182
            AE EGF V I++ D+D  QLVS  TT LY T  V E  +   E V +K+G+ P +    
Sbjct: 117 QAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+PGIPG+G KTAA  + ++G+   ++     +K K   +N+ ++ E  +L
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVEEVKGKA-GQNLRDHLEAVKL 235

Query: 243 SRKLVML--RTDVP 254
           +R+L  L  R ++P
Sbjct: 236 NRRLTELERRVELP 249


>gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 889

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/516 (33%), Positives = 278/516 (53%), Gaps = 13/516 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           KI H+ K     L   G+ +RG   D  L +Y++   + S D+A +  + L    K    
Sbjct: 379 KILHDAKGPMHALEARGMPLRGVTMDTALAAYLVKPDQRSFDLADLVVRHLGRELKAEEH 438

Query: 523 SRKSSIPIDKISDSQV-QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +    + +D  +D +V  + A+  +  +L L + L  +L       +   ++ P++D++ 
Sbjct: 439 AGGQGL-LDFDTDEEVVGQDAMVRARAVLDLSVPLSEQLEATGGTELLRDIELPLVDILG 497

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLGDILFTKLKFP 640
            ME TGI +D D L  + A+    +   + + Y+ + G++ NL SPKQL  +LF  L  P
Sbjct: 498 AMERTGIAVDTDALSALEADFDAKVREAQLDAYEAIGGDEINLGSPKQLQTVLFETLGLP 557

Query: 641 SGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
              +TKTG + T A  L  +     +P ++ +L  R   +++ T  + L   + +  QR+
Sbjct: 558 KTRRTKTG-YTTDADALTDLYAKTQHPFLEAMLRHRDAMRLRVT-VEGLIKSVAE-DQRI 614

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRIL 758
           HT Y      TGRL+S +PNLQN+PI+T+ G++IR  F+     + L+SADYSQIE+RI+
Sbjct: 615 HTTYIQTIAATGRLSSTDPNLQNVPIRTEAGRRIREVFVVGKGYESLMSADYSQIEMRIM 674

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L + F    D+HR V A +FGV  E V+ +MR   K +++ + YG+S F L+
Sbjct: 675 AHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPEDVTAEMRSKVKAMSYGLAYGLSAFGLS 734

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I   EA   +  YF RF G+ +Y+ +     R  GY  T+ GRR +  ++ S    
Sbjct: 735 KQLTISTGEAQGLMDEYFARFGGVRDYLREVVGEARATGYTATMLGRRRYLPDLTSDNRQ 794

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER A+NAPIQGSAADI + AM  V  +L +    ++MLLQ+HDELV EV E E  
Sbjct: 795 RREGAERMALNAPIQGSAADIIKLAMKGVDSALRESGAKSRMLLQVHDELVLEVAEGERD 854

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               ++   M +A    + + VPL V++ + ++W +
Sbjct: 855 DVEALVRAEMGRA----VEMDVPLDVSVGLGHSWHD 886



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 181/360 (50%), Gaps = 27/360 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L ++DG S  YRAF+A P+ +     G   N + GF +ML  +L++       +H AV
Sbjct: 2   SRLLVLDGHSLAYRAFFALPVENFSTSTGQHTNGVYGFTSMLINVLRDENP----THVAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y DYKA R   P     Q+ LVR    A  I  +++ GFEADD+IAT
Sbjct: 58  AFDVSRKTFRSEEYADYKATRSATPSEFQGQVALVREVLDALRIKHVQVDGFEADDVIAT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKM 179
            T +AE EG  V I++ D+D  QLV+    L   V+      ++D + V  K+ + PE+ 
Sbjct: 118 LTTMAEAEGMEVVIVTGDRDAFQLVTDNVSLIYPVRGVSDVWRMDPKAVEDKYLVAPERY 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DN+PG+PG+G KTAA  L  YG+L+ ++ +A  IK K   E++ E+   
Sbjct: 178 SDLAALVGETSDNLPGVPGVGPKTAAKWLGLYGDLQGVVAHADEIKGKA-GESLREHLNG 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC----- 294
              +R+L  L  D+ + + +  L     +   +      LEF  L +R+  T+D      
Sbjct: 237 VLRNRRLNQLVRDLSLPVTIAELERATWDREEVHKVFDGLEFRVLRDRLFETFDAAPDEA 296

Query: 295 -----------DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS-QFSSLSDQTSKIN 342
                       +A ++P + +  TTE  G+ +     R T   T+   ++  D  + I+
Sbjct: 297 EGGFDLDASVLSSAEVKPWLDEHATTEPTGVHVVGAWGRGTGDVTAVGLATAGDAAAYID 356


>gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 914

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 191/604 (31%), Positives = 315/604 (52%), Gaps = 37/604 (6%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
           +  W+    + G  S   +  T   +     AIA++  D         E  +I  +  T 
Sbjct: 335 VADWLSAHASTGERSGVSVVGTRTPYGGDVTAIAVAAADG--------EGAYIATASATP 386

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYV 495
           +D              L  +  +    K  H  K+    L   G  + G   D  L +Y+
Sbjct: 387 EDEKA-----------LGDWLADADQPKALHEAKWAMHALRGRGWVLGGLTSDTALAAYL 435

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS-QVQEHAIE----NSNVIL 550
           +  G+ + ++  ++   L Y R+E+         +  + D+ QV   A E    ++  +L
Sbjct: 436 VRPGQRTFNLDDLS---LRYLRRELRVEETGEEQLSLLDDADQVDAEAAETEILSARAVL 492

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            L   L  +L   +   +   ++ P+++V++ +E +GI +D   L  + +  +  + +  
Sbjct: 493 DLAAALDTELDNIESTALLSEMELPLLEVLADIEASGIAVDGTHLHDLQSRFAAEVSAAA 552

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIK 669
           E  Y + G++ NL SPKQL  +LF +L+ P   KTKT  + T A+ L+ +     +P ++
Sbjct: 553 EAAYGVIGKQINLGSPKQLQVVLFDELEMPKTKKTKT-GYTTDAEALQNLFEKTSHPFLE 611

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           ++L  R  +++K T  D L   + +   R+HT ++     TGRL+S EPNLQNIP++TD 
Sbjct: 612 HLLAHRDATRLKVT-VDGLLKTVAE-DGRIHTTFNQTVAATGRLSSTEPNLQNIPVRTDA 669

Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G++IR  F+       L++ADYSQIE+RI+AH++    L + F    D+H  V A  FGV
Sbjct: 670 GRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGARAFGV 729

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
            IE+V+P++RR  K +++ + YG+S F LA QL+I   EA   ++ YF RF G+ +Y+ +
Sbjct: 730 PIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHE 789

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
                R++GY  T++GRR +  ++ S     R + ERAA+NAPIQG+AADI + AMI+V 
Sbjct: 790 VVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQ 849

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           +SL D  L ++MLLQ+HDELV EV + E     Q++   M  A    I L VPL V++  
Sbjct: 850 RSLRDAGLKSRMLLQVHDELVLEVVDSEREQVEQLVRDKMSSA----IELSVPLDVSVGT 905

Query: 969 SNNW 972
             +W
Sbjct: 906 GRSW 909



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 163/295 (55%), Gaps = 20/295 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  + K H G   NA+ GF +ML  LL++ +     SH A  F
Sbjct: 27  LMLLDGHSLAFRAFYALPAENFKTHSGQVTNAVYGFTSMLINLLRDEQP----SHVAAAF 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E +P+YKANR K P+    Q+ + +    A GIP +  +GFEADDIIAT T
Sbjct: 83  DVSRQTFRAEKFPEYKANRSKAPDEFKGQVEITKDVLGALGIPVMAEEGFEADDIIATLT 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
             AE  G+ V +++ D+D +QLV+   T LY   K+   D+       V +K+G+ P + 
Sbjct: 143 TQAEALGYRVLVVTGDRDSLQLVTDGVTVLYP--KKGVSDLTRFTPAAVEEKYGLTPAQY 200

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEY 236
               AL GD  DN+PGIPG+G KTA   ++EYG+L  ++ N  +++ K     REN+   
Sbjct: 201 PDFAALRGDPSDNLPGIPGVGEKTATKWIKEYGDLVGLVDNVDKVRGKVGDALRENL--- 257

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                L+R+L  +  DVP+    + L+L   +  ++ +    LEF  L +R+  T
Sbjct: 258 -PNVLLNRELTEMVRDVPLPYTPDQLMLAQWDREKIHALFDDLEFKVLRDRLFAT 311


>gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836]
 gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836]
          Length = 901

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 281/513 (54%), Gaps = 14/513 (2%)

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL--KS 523
           H+ K   L     G ++ G   D  L +Y+    + S+D+A +  ++L   R+E+   ++
Sbjct: 395 HDAKGPLLGFLELGWTLAGLTSDTQLSAYLARPDQRSYDLADLTVRYL---RRELRNEEA 451

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
               +  D +      +  +  +  I  L   L  +L  +    +   ++ P+IDV++ M
Sbjct: 452 DNGQLSFDDVEGGPAADATMLRARAIADLADTLDAELAKQAGTALLADVELPLIDVIAAM 511

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  GI +D+  L+++    +  +     + Y++ G++ NL SPKQL  +LF +L+ P   
Sbjct: 512 ERDGIAVDRPYLEKLEERFATGVRDAATSAYEVIGKEINLGSPKQLQVVLFDELQMPKTK 571

Query: 644 KTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +TKTG + T A  L+ +    ++P +  +L  R  ++++ T  + L   I+ R  R+HT 
Sbjct: 572 RTKTG-YTTDADSLQALFEKTEHPFLAYLLAHRDATRLRQT-VEGLLKTISPRDARIHTT 629

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761
           ++     TGRL+S +PNLQNIPI+T+ G++IR AF+     + L+SADYSQIE+RI+AH+
Sbjct: 630 FNQTIAATGRLSSTDPNLQNIPIRTEEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHV 689

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L   F +  D H + AA +F V   +V+ +MR   K +N+ + YG+S + L+ QL
Sbjct: 690 SEDEGLIDAFNSGEDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAYGLSAYGLSQQL 749

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
           +I   EA   +  YF RF G+ +Y+        ++GY ETI GRR +  ++ S     R 
Sbjct: 750 KIGVDEAKGLMDEYFERFGGVRDYLRSIVIEAGKSGYTETILGRRRYLPDLTSDNRQRRE 809

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           + ER A+NAPIQGSAAD+ + AM+ V  SL    L ++MLLQ+HDELVFE+   E     
Sbjct: 810 MAERMALNAPIQGSAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEIAPGEREALE 869

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +++   M  A    + + VPL V++ V   W E
Sbjct: 870 ELVRRDMGSA----VEMAVPLDVSVGVGRTWHE 898



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 163/293 (55%), Gaps = 10/293 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            + L+DG S  YRAFYA P+ +     G   NA+ GF +ML  +L++ +     +H  V 
Sbjct: 15  RILLLDGHSLAYRAFYALPVENFSTSTGQHTNAVYGFTSMLINMLRDEQP----THVCVA 70

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YKA R K P+    Q+ LV+   +A  IP  EI G+EADDIIAT 
Sbjct: 71  FDVSRKTFRSEQYTEYKAGRSKSPDEFKGQVSLVKEVLEALRIPTTEIDGWEADDIIATL 130

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMV 180
              A  +GF V I S D+D  QLVS   T LY    V E  ++D   V +K+G+ P    
Sbjct: 131 ATQASDQGFEVLISSGDRDAFQLVSDNVTVLYPKRGVSEIARMDPAAVEEKYGVTPRLYP 190

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL G+  DN+PG+PG+G KTAA  L ++G+L++++   + IK K   E++ E+    
Sbjct: 191 DLAALVGEQSDNLPGVPGVGPKTAAKWLNQFGSLDDVVDRVNEIKGKA-GESLREHLADV 249

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
             +R++  L  D+ + + ++ L+ +  +  ++ +   +LEF  L  R+   ++
Sbjct: 250 IRNRQINELVRDLTLDVSVDDLVRQPWDRDKVHTLFDSLEFRVLRERLVAEHE 302


>gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 928

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 174/527 (33%), Positives = 281/527 (53%), Gaps = 12/527 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L  F  +    K  H  K   L L  +G  + G   D  L +Y++  G+   D+A + +K
Sbjct: 406 LADFLADPRRPKAVHEYKGALLALGAHGWELGGVVSDTALAAYLVQPGQRRFDLADLCRK 465

Query: 512 WLSYTRKEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           +L    +E     + ++ +  +  + S  Q      ++    L  +L  +L      H+ 
Sbjct: 466 YLGRELEEDSSGDQLTLDLGGEDGAGSGRQHLLAVRASATRDLAGVLSAELDKRGGTHLL 525

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             ++ P++DV++++E  GI  D+  L+++  E +       E  +++ G +FNL SPKQL
Sbjct: 526 HEVELPLVDVLARLERAGIAADRPYLEELQGEFAAAGRVAVERAHEIVGREFNLGSPKQL 585

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSL 688
             +LF  L  P   K KTG + T A  L  +    DN +   +L  R  +K+++T    +
Sbjct: 586 QQVLFEDLGLPRTKKIKTG-YTTDADALAWLASQTDNELPAVLLHHRDQTKLRTTVEGLI 644

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
               +    R+HT ++     TGRL+S +PNLQNIP++TD+G++IRRAF+     ++L++
Sbjct: 645 KTVADD--GRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDVGRRIRRAFVVGEGYEELLT 702

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELRI+AH++    L   F +  D H  +AA+IF V +E+V  + R   K +++ 
Sbjct: 703 ADYSQIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSYG 762

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           + YG+S + L+ QL I   E+   ++ YF  F G+ +Y+       R+ GY ETI GRR 
Sbjct: 763 LAYGLSAYGLSQQLGITPEESKRLMEDYFAEFGGVRDYLNAMVEEARRVGYTETILGRRR 822

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ S     R + ER A+NAPIQGSAADI + AM+ V  +L +  L +++LLQ+HDE
Sbjct: 823 YLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLRVDAALTEGGLTSRVLLQVHDE 882

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LV EV   E      I+   M  A     +LRVPL V++    NW +
Sbjct: 883 LVVEVAPGERAEVENIVAREMSSA----YDLRVPLAVSVGSGQNWHD 925



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 148/284 (52%), Gaps = 16/284 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAF+A P+       G   NA+ GF +ML KLL++       +H AV +
Sbjct: 23  LLLLDGHSMAFRAFFALPVDKFGTSTGQSTNAVYGFASMLVKLLRDEEP----THVAVAW 78

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y +YK  R   P     Q+PL +   +  G+  +   GFEADD+IAT  
Sbjct: 79  DLSGPTFRHEEYAEYKDGRSDTPPEFPSQVPLTQDLMRLIGVANLSAPGFEADDVIATLA 138

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
           +   + G  V I S D+D  QLV+ + T LY         ++D   V  K+G+ PE+   
Sbjct: 139 HQGGEAGMEVLIASGDRDAFQLVTDSCTVLYPGKSLSDLRRMDPAAVEDKYGVTPERYRD 198

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAE 238
           L AL G+  DN+PG+PG+G KTAA  + +YG+L+ ++ +A  +  K     R+++ +   
Sbjct: 199 LAALVGEKADNLPGVPGVGPKTAAKWITKYGSLDELVAHADELTGKAGQSFRDHLDDVLR 258

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
             RL+R    L TDV +   +  L L + +   + +    LEF 
Sbjct: 259 NQRLNR----LATDVELDAEVTALALGEADRTGIDALFDNLEFA 298


>gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018]
 gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018]
          Length = 896

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 188/520 (36%), Positives = 308/520 (59%), Gaps = 31/520 (5%)

Query: 467 HNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDS----GRSSHDIASIAQKWLSYTRKEIL 521
            N KYD +++ + + I +R + D M++S++L++    G           K +S+T  +++
Sbjct: 394 QNFKYDYEIIKNNFDIELRLYADTMILSWLLNTNEKVGLDYQIDKYFDHKMISFT--DVV 451

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLW---LLLRPKLIVEKLLHVYERLDKPMID 578
           K  ++   +D     +  E+A E++ + L+L+   L +  +   E++L++   ++   I 
Sbjct: 452 KKGENFSNVDI---ERACEYAAEDALMTLRLFKKQLEIFKEKEEEEILNLAFEVEFDFIY 508

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V++ ME+ GI++D +LLK+     +KN+  L   IY  SG +FN++SPKQLG +LF  L 
Sbjct: 509 VLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQTSGVEFNINSPKQLGALLFETLG 568

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-Q 697
            P+  KTKTG + T    L  +   ++ +I  +L++R+  K++STY + L    +K    
Sbjct: 569 LPTAKKTKTG-YSTDEAVLNGL-INEHEVIPLLLQYREAYKLQSTYIEPLLELGSKSDDN 626

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+HT +    T TGRL+S  PNLQNIP K+D   +IR+AFI     KL++ DYSQIELR+
Sbjct: 627 RIHTSFLHTGTATGRLSSKNPNLQNIPTKSDSTIQIRKAFIPKDGYKLVAVDYSQIELRL 686

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH ++   L + FEN LDIH   A +IFG   E+ + + R  AK+INF ++YG+   +L
Sbjct: 687 LAHFSQDKALVEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKL 743

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
              L IP  EA  YI  YF  F  + +Y++  ++F   NGYV+T+  R+  +D  NS  +
Sbjct: 744 GETLGIPSKEAKQYIDSYFEAFKSVKDYLKSIEDFAHINGYVKTLLNRKRLFD-FNSANA 802

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--- 934
            ++    R A+N   QGSAAD+ + AMI++++  +D++   K+LLQIHDELVFEV +   
Sbjct: 803 MMKAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNE-NIKLLLQIHDELVFEVKDEFV 861

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EEIT + + I+ ++ K       L VPLKV++ V ++W++
Sbjct: 862 EEITFSIKNIMENIYK-------LNVPLKVSLSVGSSWKD 894



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 147/258 (56%), Gaps = 7/258 (2%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D   F++R+++A P L +  DG P   + GF N     + N  K+    +     D  
Sbjct: 7   IIDTFGFLFRSYFALPPL-KSRDGFPTGLLTGFIN----FISNIGKDFETDYIVFALDAK 61

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFRN++Y  YKA RP+ PE LL QLP+     +  G       G+EADD++A+    A
Sbjct: 62  GETFRNKLYSQYKAQRPEAPEDLLTQLPIAISWIEKMGFKTAIRTGYEADDMVASIANDA 121

Query: 129 EKEGFAVTIISTDKDLMQLV--SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +++G  V I+S DKDL QL+  + +  L+D  K+  I+ E  I+K+G+ P +    Q+L 
Sbjct: 122 KQKGLEVRIVSHDKDLYQLIDDANSVYLFDPTKKVIINEEKCIEKYGVKPSQFTDYQSLL 181

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+ G+G KTA  L++E+G LENI  N   I++K+ +E ++E  E A LS+KL
Sbjct: 182 GDTADNIPGVKGVGAKTAESLIKEFGTLENIYANIDNIEKKRTKELLIEGKENAILSKKL 241

Query: 247 VMLRTDVPITIPLEHLIL 264
           V L  D      LE  IL
Sbjct: 242 VTLMNDCHYIDNLEEFIL 259


>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 913

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 289/513 (56%), Gaps = 25/513 (4%)

Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----- 521
           KL +H   ++ RG+       D  L +Y++  G+ S  +  +A   L Y R+E+      
Sbjct: 408 KLAMHD--LAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLA---LRYLRRELRAENPQ 462

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           + + S +     +D Q  +  I  +  +L L   L  +L       +   ++ P+  V++
Sbjct: 463 QQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLA 522

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI +D DLL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L+ P 
Sbjct: 523 GMENAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQMPK 582

Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             +TKTG + T A  L+ + +   +P ++++L  R  +++K T  D L N +     R+H
Sbjct: 583 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 639

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T ++     TGRL+S EPNLQNIPI+T+ G++ R AF+      +L++ADYSQIE+RI+A
Sbjct: 640 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRTRDAFVVGDGYAELMTADYSQIEMRIMA 699

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + F    D+H  VA+  FGV IE+V+ ++RR  K +++ + YG+S + L+ 
Sbjct: 700 HLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQ 759

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA + +  YF RF G+ +Y+       R++GY  T+ GRR +  E++S    +
Sbjct: 760 QLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQV 819

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI V K++++  L +++LLQ+HDEL+FEV   E   
Sbjct: 820 REAAERAALNAPIQGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQ 879

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              +    M  A      L VPL+V++    +W
Sbjct: 880 LEALARDKMGGAY----PLDVPLEVSVGYGRSW 908



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 167/307 (54%), Gaps = 14/307 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q    L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H
Sbjct: 22  QNRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTH 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR++ YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+
Sbjct: 78  IAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 137

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPP 176
           IAT    AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P
Sbjct: 138 IATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVVEKYGLTP 197

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++ N   ++ K   + + E+
Sbjct: 198 QQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQALVDNVDSVRGKV-GDALREH 256

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +   +R+L  L  DVP+    + L L+  +  ++      LEF  L +R+  T     
Sbjct: 257 LASVIRNRELTDLIKDVPLAQTPDTLRLQPWDRDQIHRLFDDLEFRVLRDRLFETL---- 312

Query: 297 ANIEPVV 303
           A +EP V
Sbjct: 313 AAVEPEV 319


>gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K     L   G  + G   D  L SY+L   R +H      +  L+    E  +
Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +   ++ +D   D   +  ++E +  + +L  ++  ++       +   ++  +   +  
Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 304 EVDDTLEISGT 314


>gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 889

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 185/527 (35%), Positives = 295/527 (55%), Gaps = 45/527 (8%)

Query: 465 IGHNIKYDKLVLH-RYGISMRGFEDI---MLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517
           IGHN+KYD  +LH  +  + + + +I   ML++++  S     ++  +  ++  +T    
Sbjct: 388 IGHNLKYDLEILHTNFNFTPKSYHNIKDSMLLAWLYQSDMPC-NLDDLMARYFKHTMIAF 446

Query: 518 KEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
           K+I+K  +  S +PI+         +A E++    QL+  +   L+ + L  V   ++ P
Sbjct: 447 KDIIKKGENFSQLPIE-----NAFTYACEDAAACYQLFFKIN-SLLPKSLQEVANNVEFP 500

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
            I  +  ME++G +I+    K + +E+++ L +L + IY L+ ++FNL+SP+QL  +LF 
Sbjct: 501 FIQCLVNMELSGTKINIKYFKNLKSEMTEKLQALSQEIYTLANKRFNLNSPQQLSIVLFE 560

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           +L   SG KTK+G   T +  L  +    +PII  +LE+R+L K+ STY + L    ++ 
Sbjct: 561 ELNLQSGKKTKSG-LSTNSSVLNSLR-DSHPIIPKVLEYRELFKLYSTYIEPLIELASQD 618

Query: 696 -TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
              +V+T +    T TGRL+S  PNLQNIP+KT  G++IR  FI+     L+S DYSQIE
Sbjct: 619 PAHKVYTSFMQTGTSTGRLSSKNPNLQNIPVKTQQGRRIREGFIAQEGHLLLSLDYSQIE 678

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LAH ++ + + + F    DIH   A +IFG   E+++ + R  AK+INF +IYG+  
Sbjct: 679 LRLLAHFSQDSAMIEAFHKEADIHLETAKKIFG---EELAQEKRSVAKSINFGLIYGMGA 735

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            +L+  L+I   EA  YI+ YF  FP +  ++++ + F+ +NGY  T+ GR         
Sbjct: 736 RKLSETLQINHQEAKSYIQNYFQSFPTVKNFLKEQEEFILKNGYSLTLLGRM-------- 787

Query: 875 PKSSIRNINE-------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            K S  NI E       R  INA  QGSAADI + AMI + +     KL +K+LLQ+HDE
Sbjct: 788 RKFSFENIQEFQKVAFLREGINAIFQGSAADIIKLAMIQITQ----EKLESKLLLQMHDE 843

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+FE P+    T ++ I   ME        LRVPL+  + +  NW E
Sbjct: 844 LIFEAPKNIAETEAKKIAQIMESIT----TLRVPLRCGVSLGANWGE 886



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/266 (36%), Positives = 150/266 (56%), Gaps = 10/266 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F++R+++A P L +  +G P   + GF  ++ ++ ++   + +   FA+  D
Sbjct: 4   LTIIDTFGFLFRSYFALPPL-KNREGFPTGLLTGFAKLILQIYKDYPNDYLV--FAL--D 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR  I P YKANRP++PE L  QL +     +  G   I I G+EADD+IA+   
Sbjct: 59  SKEENFRKNIDPLYKANRPEVPEDLKLQLEVAIAWVEKMGFKNISIAGYEADDVIASINK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A     +V IIS DKDL QL+   T L+D  K+++I  E  ++K+G+ P + V  Q++ 
Sbjct: 119 CANALEVSVRIISHDKDLYQLIDGDTFLFDPKKKQEIREEQCMEKYGVTPAQFVDYQSIV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DN+PGI GIG K A+ LL+ YG L+NI  N   I  ++ +  + E  E A  S++L
Sbjct: 179 GDSADNVPGIKGIGAKGASNLLKTYGCLDNIYQNLDSIAPERTQTLLKEAKEDAYRSQQL 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRL 272
           V LR D+     L    L+DC  PR+
Sbjct: 239 VRLRDDL-----LSDFNLQDCQMPRV 259


>gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1]
 gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 866

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 183/534 (34%), Positives = 294/534 (55%), Gaps = 27/534 (5%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           ++ LK FF ++     G+  K D   L   GI +    D++L  +++  G      A I+
Sbjct: 350 IALLKDFFADKATQFFGYRSKRDNHALRNSGIDVHVTADLVLAEHLVSGG------AKIS 403

Query: 510 QKWL----SYTRKEILKSRK---SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            + L     + ++ +  S++    S+P+  +     Q   +  S  +L +   L  KL  
Sbjct: 404 FQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPAQYFGMFASK-LLAIKNYLFVKLEE 462

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           + L  ++E +++P+  V+  ME  G+ +D   L  +  +++K L    + IYDL+G +FN
Sbjct: 463 KGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLTGCEFN 522

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           + SPKQL DIL+ +L      K K+    T A+ LE +    + II  IL +R   K+ S
Sbjct: 523 IKSPKQLSDILYQRLGIEPVDKAKS----TKAEVLEALE-DRHEIIPKILMFRATEKMLS 577

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPP 741
           TY  +LP  IN  TQR+H  ++   T+TGRL+  +PNLQNIP++++ G+ +R AF +   
Sbjct: 578 TYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQDPNLQNIPVRSERGRSLREAFRVKKD 637

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               ++ADYSQIELR LAH+++   L + F +  DIH   A+++F V +E+V+ Q R  A
Sbjct: 638 NDYFLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQERYQA 697

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF ++YG   + L+  L+I  SEA   +  YF R+P   E+I +T     +N  V T
Sbjct: 698 KAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTT 757

Query: 862 IFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           + GR RI  D  +SP +  R  + R A+N  IQGSAA++ + AM+++   +    L +++
Sbjct: 758 MLGRERILSDWESSPGA--RAASGRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRL 815

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQIHDEL+FEVP EE+     ++   ME A    + L VPL VN+ +  NW E
Sbjct: 816 LLQIHDELLFEVPAEELEEMRSLVQEKMESA----MELSVPLVVNVLIGKNWAE 865



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 168/312 (53%), Gaps = 11/312 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LF++D S F++RA++A P + R  +G    A+ GF   L KL+++   E + +    +FD
Sbjct: 4   LFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPEYVVA----VFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R E+Y DYK+NR +  E L  Q+ LV+   +  GI  +E +G EADD+IA+ T
Sbjct: 59  GPNNKQSRQELYADYKSNRDRQLEDLPEQIRLVKQYCELLGISCLEEKGVEADDVIASIT 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A  +GF V I + DKDL+QLVS    +++  KE++I    V+ ++G+PPE++    AL
Sbjct: 119 KKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLLQFGVPPEQIADYLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ G G K A  LL+E+ ++E ++ N  R+   K ++ I +  ET  LS++
Sbjct: 179 VGDSSDNIPGVSGCGPKKAQALLKEFQSVEELVANTERLS-GKTKQMIEDQKETLLLSKR 237

Query: 246 LVMLRTDVPITIPLEHLIL--EDCNGPRLISFLKALEFTKLINRVATTYDCDAAN--IEP 301
           L  L  D+   +  E      +  +  +L +F     F  L+    T     A     +P
Sbjct: 238 LATLHMDLAFPLTTEEFAFSPQAIDSAQLNTFYLQHGFKALVKHSETATSSIAVQTVTDP 297

Query: 302 VVLDINTTENKG 313
           V L     + KG
Sbjct: 298 VTLKTVLEQLKG 309


>gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266]
          Length = 931

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K     L   G  + G   D  L SY+L   R +H      +  L+    E  +
Sbjct: 425 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 484

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +   ++ +D   D   +  ++E +  + +L  ++  ++       +   ++  +   +  
Sbjct: 485 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 541

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 542 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 601

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 602 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 658

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 659 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 718

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 719 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 778

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 779 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 838

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 839 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 898

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 899 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 926



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 48  LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 103

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 104 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 163

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 164 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 223

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 224 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 282

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 283 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 342

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 343 EVDDTLEISGT 353


>gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
          Length = 897

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 183/555 (32%), Positives = 292/555 (52%), Gaps = 39/555 (7%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502
            L+ E  + L  +  +E   K  H +K+    L   G ++ G   D  L +Y++  G+ +
Sbjct: 355 ALSVEDDAALADWLADESRPKAVHEVKWALHALRGRGWTLTGVTSDTALAAYLVRPGQRT 414

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            ++  +A   L Y R+E+     +        D Q+     +         L+L  + + 
Sbjct: 415 FNLDDLA---LRYLRRELKAEDGAG------DDGQLSLLDDDADAQRAADQLMLSAQAVA 465

Query: 563 E---KLLHVYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           E    L    ER+D          P+  V++ +E  GI +D D L  +  + ++ +    
Sbjct: 466 ELADTLDTELERIDSSALLQEMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQRVRDAA 525

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           E+ Y++ GE+ NL SPKQL  ILF KL  P   KTKTG               ++P +K+
Sbjct: 526 ESAYEVIGEQVNLGSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFLKH 585

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           +LE R  ++++ T  + L   +    QR+HT ++     TGRL+S +PNLQNIP++T+ G
Sbjct: 586 LLEHRDATRLRVT-VEGLQKTVAD-DQRIHTTFNQTVAATGRLSSTDPNLQNIPVRTEAG 643

Query: 731 QKIRRAFISPPT-----------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           ++IR AF+  P            + L++ADYSQIE+RI+AH+++   L + F    D+H 
Sbjct: 644 RQIRHAFVVAPGPVAVGSGNIEFESLMTADYSQIEMRIMAHLSEDEGLIEAFNTGEDLHN 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            V +  FGV +++V PQMR   K +++ + YG+S + LA QL I R EA   ++ YF RF
Sbjct: 704 FVGSRAFGVPVDQVDPQMRSRVKAMSYGLAYGLSAYGLAAQLGISREEAKQQMEAYFDRF 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ +Y+ +     R+N Y  T+FGRR +  ++NS     R   ER A+NAPIQG+AADI
Sbjct: 764 GGVRDYLHRVVEEARRNEYTATLFGRRRYLPDLNSDNFQRRQSAERMALNAPIQGTAADI 823

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V K L   +L+++MLLQ+HDELV EV   E      ++   M  A    I+L 
Sbjct: 824 IKVAMINVQKRLRTEQLSSRMLLQVHDELVIEVATGEQAAVEALVREEMGGA----IDLS 879

Query: 960 VPLKVNIKVSNNWQE 974
           VPL+V++    +W +
Sbjct: 880 VPLEVSVGYGRSWDD 894



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 163/302 (53%), Gaps = 20/302 (6%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  YRAF+A P  + K + G   NA+ GF +ML  LL++       +H A  FD
Sbjct: 1   MLLDGHSLAYRAFFALPAENFKTNTGQSTNAVYGFTSMLINLLRDEEP----THIAAAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++P+YKA R K P+    Q+ L +    A GIP + I G+EADDIIAT   
Sbjct: 57  VSRQTFRSDMFPEYKAQRSKSPDEFRGQVDLTKEVLDAMGIPVMAIDGYEADDIIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            A+++G+ V +++ D+D +QLV+   T LY      +  +   + V KK+G+ P +    
Sbjct: 117 AADQQGYRVFVVTGDRDSLQLVNENITVLYPKRGVSEMTRFTPDEVEKKYGLTPAQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAET 239
            AL GD  DN+PGIPG+G KTAA  ++EYG+ E ++  A  ++ K     R N+      
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWIREYGSFEELVNRADEVRGKVGDSLRANLAGVI-- 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             ++R+L  L  D+ +    + L L   +  R+      LEF  L +R+ +T      ++
Sbjct: 235 --MNRRLTELVRDMQLPAGPDELELHGWDRDRIHQLFDDLEFKVLRDRLFSTL----TSV 288

Query: 300 EP 301
           EP
Sbjct: 289 EP 290


>gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92]
 gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054]
 gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
 gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
          Length = 904

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 169/497 (34%), Positives = 285/497 (57%), Gaps = 11/497 (2%)

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537
           G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E  + ++ S+  D  +D++
Sbjct: 410 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 469

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +  I  +  ++ L   L  +L       +   ++ P+  V+++ME  GI +D  +L +
Sbjct: 470 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 529

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + ++    +    E  Y + G++ NL SPKQL  +LF +L  P   +TKTG + T A  L
Sbjct: 530 LQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 588

Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + + +   +P ++++L  R ++++K T  D L   +     R+HT ++     TGRL+S 
Sbjct: 589 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 646

Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+TD  ++IR AF+      +L++ADYSQIE+RI+AH++    L + F    
Sbjct: 647 EPNLQNIPIRTDASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 706

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +  Y
Sbjct: 707 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 766

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+       R++GY  T+ GRR +  E++S    +R   ERAA+NAPIQGS
Sbjct: 767 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGS 826

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI V K+L + +LA++MLLQ+HDEL+FE+   E      ++   M  A    
Sbjct: 827 AADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAY--- 883

Query: 956 INLRVPLKVNIKVSNNW 972
             L VPL+V++    +W
Sbjct: 884 -PLDVPLEVSVGYGRSW 899



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 13/302 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H A  F
Sbjct: 17  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 72

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IAT  
Sbjct: 73  DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 132

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P +   
Sbjct: 133 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++ K         A   R
Sbjct: 193 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR 252

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  DVP+    + L L+  +   +      LEF  L +R+   +D  AA   P
Sbjct: 253 -NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGP 308

Query: 302 VV 303
            V
Sbjct: 309 EV 310


>gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440]
 gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440]
          Length = 899

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 173/520 (33%), Positives = 287/520 (55%), Gaps = 16/520 (3%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K   L     G +++G   D  + +Y+    + S+D+  +A ++L    +  L 
Sbjct: 388 KVLHDSKPAVLAFAARGCAIQGIARDTQIAAYLARPDQRSYDLTDLALRYLHRELRVDLP 447

Query: 523 SRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLI--VEKLLHVYERLDKPMIDV 579
                + +D +  D + +++ +  +   L L   +  +L    E+   +   ++ P++ V
Sbjct: 448 E-TGQLTLDGLGNDGEAEQNLMLRARATLDLADAIDAELSRDGEQSARLMAEVELPLMRV 506

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ ME TGI  D   L ++ A  +  + +  +  Y+  G +FNL SPKQL +ILF +L  
Sbjct: 507 LAGMERTGIAADTQYLSELEAHFAAEVKAAAQGAYEAVGREFNLGSPKQLQEILFGELGL 566

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNP--IIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           P   + KTG   TT  D  Q   G NP  ++ ++L  R ++K+K+T  D L   ++    
Sbjct: 567 PKTKRIKTGY--TTDADALQWLYGQNPHPVLGHLLRHRDVAKLKTT-VDGLLKSVSD-DG 622

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756
           R+HT ++     TGRL+S EPNLQNIPI+T+ G++IRRAF+     + L++ADYSQIE+R
Sbjct: 623 RIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGTGYECLLTADYSQIEMR 682

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH++    L   F + LD H   A+ +F V +E V+   RR  K +N+ + YG+S F 
Sbjct: 683 IMAHLSADEALIDAFNSGLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGLAYGLSAFG 742

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ QL +   EA   ++ YF  F G+ +Y+++     R++GY E++ GRR +  ++ S  
Sbjct: 743 LSQQLGVTAEEARGLMETYFAGFGGVRDYLQEVVARARRDGYTESVLGRRRYLPDLVSDN 802

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
              R + ER A+NAPIQGSAADI + AM++V  ++ +  L ++MLLQ+HDELVFEV   E
Sbjct: 803 RQRREMAERMALNAPIQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELVFEVAPGE 862

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                 ++   M  A      L VPL+V++    +W   +
Sbjct: 863 REALEALVRREMGGA----FPLSVPLEVSVGDGRDWNSAD 898



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 128/226 (56%), Gaps = 9/226 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H AV F
Sbjct: 8   LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THIAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D   V+FR E Y  YKA R + P     Q+ LV+    A  IPA+E+ G+EADD+IAT T
Sbjct: 64  DVSRVSFRTEKYAAYKAGRSETPTDFKGQVSLVKEILAALRIPAVEMAGYEADDVIATLT 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  +  AV I + D+D  QLV    T LY         ++D   V  K+G+PP+    
Sbjct: 124 RQARDQDMAVLITTGDRDAFQLVDDDVTVLYPRKGVSDLARMDPAAVTAKYGVPPQHYRD 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           L AL G++ DN+PG+PG+G KTAA  +  YG +E ++  A  IK K
Sbjct: 184 LAALVGETSDNLPGVPGVGPKTAAKWITAYGGVEGVVARADEIKGK 229


>gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
          Length = 892

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K     L   G  + G   D  L SY+L   R +H      +  L+    E  +
Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +   ++ +D   D   +  ++E +  + +L  ++  ++       +   ++  +   +  
Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 185 LAALMGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 304 EVDDTLEISGT 314


>gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K     L   G  + G   D  L SY+L   R +H      +  L+    E  +
Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +   ++ +D   D   +  ++E +  + +L  ++  ++       +   ++  +   +  
Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRVLATESDADGVD 303

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 304 EVDDTLEISGT 314


>gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 918

 Score =  293 bits (751), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 178/520 (34%), Positives = 287/520 (55%), Gaps = 26/520 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           KI H+ K    V   +G+S+ G   D  L +Y++  GR +  + +++   L Y  +E++ 
Sbjct: 411 KIMHDAKGLMRVFGEHGMSVAGVSMDTALGAYLVKPGRRTFALGALS---LEYLGRELVP 467

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMID 578
           +++S   +   +D + Q   +   +  IL L   L    P++  E LL     ++ P   
Sbjct: 468 AQESDGQLAFGADDESQARTLMVEARTILDLGTALTARLPEVGAEGLL---TDIELPTSA 524

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           ++++ME  GI+ D+  L+++  + +  +       +   G +FNL SPKQL ++LF +L 
Sbjct: 525 LLARMERAGIKADRAHLEEMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGELN 584

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDN----PIIKNILEWRQLSKIKSTYADSLPNHINK 694
            P   KTKTG + T A  L  +  G      P+I  +L  R+ +K++ST  + L   I  
Sbjct: 585 LPKTRKTKTG-YTTDADSLAWL-AGQTEHELPVI--MLRHREQAKLRSTV-EGLIKSIAP 639

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
              R+HT ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQI
Sbjct: 640 -DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFEALMTADYSQI 698

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR++AH+++   L   F +  D+HR VA  +FGV    V  +MRR  K +++ + YG+S
Sbjct: 699 ELRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFGVEPAAVDAEMRRKIKAMSYGLAYGLS 758

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F L+ QL I   EA   +  YF RF G+ +Y+ +     R  GY  T+ GRR +  ++N
Sbjct: 759 AFGLSQQLGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLN 818

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S     R   ER A+NAPIQG+AADI + AM++V ++L + +L ++MLLQ+HDE+V E+ 
Sbjct: 819 SDNRQRREAAERMALNAPIQGTAADIVKIAMLNVDRALREAELTSRMLLQVHDEIVLELA 878

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             E     +I+   M  A      LR PL V++ V  +W+
Sbjct: 879 PGERAPVEEILRREMAAAA----ELRAPLTVSVGVGRDWE 914



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 142/254 (55%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 27  LMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R E + +YKANR K P+    Q+ L+             ++GFEADDIIAT  
Sbjct: 83  DVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIATLA 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QLVS  TT LY T  V E  +   E V +++G+ P +   
Sbjct: 143 TQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQYPD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ +  +
Sbjct: 203 FAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKGKA-GQNFRDHLDAVK 261

Query: 242 LSRKLVMLRTDVPI 255
           L+R+L  +  DVP+
Sbjct: 262 LNRRLTEMVRDVPL 275


>gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
          Length = 915

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K     L   G  + G   D  L SY+L   R +H      +  L+    E  +
Sbjct: 409 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 468

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +   ++ +D   D   +  ++E +  + +L  ++  ++       +   ++  +   +  
Sbjct: 469 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 525

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 526 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 585

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 586 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 642

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 643 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 702

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 703 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 762

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 763 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 822

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 823 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 882

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 883 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 910



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 32  LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 87

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 88  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 147

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 148 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 207

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 208 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 266

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 267 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 326

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 327 EVDDTLEISGT 337


>gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
          Length = 910

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K     L   G  + G   D  L SY+L   R +H      +  L+    E  +
Sbjct: 404 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 463

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +   ++ +D   D   +  ++E +  + +L  ++  ++       +   ++  +   +  
Sbjct: 464 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 520

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 521 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 580

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 581 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 637

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 638 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 697

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 698 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 757

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 758 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 817

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 818 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 877

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 878 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 905



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 27  LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 83  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 143 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 203 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 262 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 321

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 322 EVDDTLEISGT 332


>gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K     L   G  + G   D  L SY+L   R +H      +  L+    E  +
Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +   ++ +D   D   +  ++E +  + +L  ++  ++       +   ++  +   +  
Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  ++ K   ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVRGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 304 EVDDTLEISGT 314


>gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
 gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
          Length = 904

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 165/444 (37%), Positives = 253/444 (56%), Gaps = 6/444 (1%)

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +++ D+  + H        L L  +L P++    L  +   L+ P+I V++ ME  GI I
Sbjct: 465 EELPDAVDEVHPDAQGMAALALMHVLGPRIKSAGLDELTANLEIPLIPVLADMEKAGITI 524

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D       E+++ +  L   I++ +GE FN+ S +Q+  +LF  L    G KT  G  
Sbjct: 525 DLDAFADFLTEVNERINELTRVIHERAGEPFNIRSSQQMATVLFDSLGLKPGGKTPKGAL 584

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LE+++ G + II +ILE+R++ K++STY + LP  +N    R+HT ++  +T T
Sbjct: 585 STANSVLEKLS-GQHEIITDILEYRKMEKLRSTYLEPLPKLVNA-NGRIHTNFNQLATAT 642

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIPI+ D G+++R  F +    +L +ADYSQ+ELR+LAH +    L   
Sbjct: 643 GRLSSSGPNLQNIPIRGDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSA 702

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           FE+  DIH   AA +F  +   V+   RR+AKTINF +IYG+ P +L+ +L I  +EA +
Sbjct: 703 FEHDEDIHSRTAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQKLSRELGIKINEAKE 762

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I +YF +   + E+ +      R+ GYV T+ GRR    E++S    I +   R AIN 
Sbjct: 763 FIAKYFEKLDVLKEFYDSVVEQGREKGYVTTLSGRRRLLPELHSTSPQILSQARRQAINT 822

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQGSAADI + AMI V  + E   L  +++LQIHDEL+ E PEE I    +++   M+ 
Sbjct: 823 VIQGSAADIIKMAMIKVADNAEIKHLGGRLILQIHDELLVEGPEENIEEIGKLLQKDMQT 882

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                  L VPLKV++ +  NW +
Sbjct: 883 VA----TLAVPLKVDLGLGRNWAQ 902



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 185/387 (47%), Gaps = 33/387 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS+F YR F+A P L R  DG+P NA+      L K++    KE    +   I D
Sbjct: 14  LYLIDGSAFFYRGFHAYPDLKRS-DGVPTNAMFFVLRTLLKVI----KEEKPKYLVFILD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT- 125
                FR+E+Y  YKA RP +P+ L  Q+  ++ A    G+P I  +G EADD IA+   
Sbjct: 69  GKGKNFRHELYDQYKAQRPPMPDDLRSQIEPLKEALNVIGVPLIVSEGEEADDCIASLAA 128

Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKI-DIEHVIKKWGIPPEKMVCL 182
            Y +E+    V I+  DKDL Q +     ++D   K+EKI  +    +   + PE+    
Sbjct: 129 RYKSER---PVVILGADKDLKQCLDENVFMWDPAGKKEKITSLADFREDTKLEPEQWADF 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRR---ENILEY 236
           QAL GDS DNIPG+PG+G  TA  ++ EY  LE+I  N  ++K   QKK +   ENI  Y
Sbjct: 186 QALVGDSADNIPGVPGVGKVTATKIMAEYPTLEDIRDNYDKLKPAIQKKMKDELENIFVY 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                  R+L  +R        L+   L   +G R   F+   EF  L+  V + +   +
Sbjct: 246 -------RELTRMRLGSCSDCDLKQCELRSVDGDRAAEFMTTYEFRSLVRDVKSLFSATS 298

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP------QKL 350
            +  P      +   +  ++  E D  +  K  + +S   Q S +  E TP       +L
Sbjct: 299 GSGVPAGNSKKSASGQA-SLFGEEDTTSAAKPKKSASGGGQFS-LFGEATPAPAAPENRL 356

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDI 377
            L+++   S+ P   D    +V   +I
Sbjct: 357 ELKKISSASELPDFTDKEVGLVREGNI 383


>gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K     L   G  + G   D  L SY+L   R +H      +  L+    E  +
Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +   ++ +D   D   +  ++E +  + +L  ++  ++       +   ++  +   +  
Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 304 EVDDTLEISGT 314


>gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202]
          Length = 931

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 239/392 (60%), Gaps = 9/392 (2%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 542 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 601

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 602 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 658

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 659 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 718

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 719 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 778

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 779 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 838

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 839 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 898

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 899 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 926



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 48  LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 103

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 104 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 163

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 164 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 223

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 224 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 282

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 283 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 342

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 343 EVDDTLEISGT 353


>gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
 gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
          Length = 878

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 223/392 (56%), Gaps = 6/392 (1%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI ID   L    AE++  L  LE  I +L+GE FN  S +QLG++L+ ++     
Sbjct: 491 MERIGIGIDTAALAAFGAEVATELARLEGAIRELAGEGFNPRSSRQLGEVLYGRMGLKPR 550

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  G   T+ + LE++  G+NP++  ILE+R+L K++STY D LP  +     R+HT 
Sbjct: 551 GKTPGGAASTSQEALERL-AGENPLVDRILEFRKLEKLRSTYLDPLP-RLADAAGRIHTT 608

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++  +T TGRL+S  PNLQNIPI+  LG+++R  F++   KKL++ADYSQIELR+LAH++
Sbjct: 609 FNNLATATGRLSSSNPNLQNIPIRGTLGRRMRECFVAAAGKKLVAADYSQIELRVLAHLS 668

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L   FE   DIH   AA +F      + P  RR AKTINF ++YG+ P +L+  L 
Sbjct: 669 GEPALLAAFEQGADIHARTAAILFDKAEADIRPDERRQAKTINFGLLYGMGPQKLSRDLG 728

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I    A  +I++YF R  G+  + +   +  +  G+V T+ GRR    EI+S  S + + 
Sbjct: 729 IKLDAAKAFIEKYFERLSGLSTFYQGIVDTAKAQGFVTTLAGRRRLLPEIHSANSQLASQ 788

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             R AIN  +QG AADI + AM++ H   E   L   M+LQ+HDEL+ E PE     A+Q
Sbjct: 789 ARRQAINTVVQGGAADIIKMAMLAAHNDPELAGLGAAMVLQVHDELLLETPE----AAAQ 844

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +       + L VPL V+      W +
Sbjct: 845 AAGERLSALMCGVVALAVPLAVDWGAGQTWGQ 876



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 151/291 (51%), Gaps = 13/291 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +++ +FLVDG++F YR ++A   LSR  DG P +A+     +L+KLL    KE   SH  
Sbjct: 10  EQSPVFLVDGTAFFYRGYHAFGDLSRS-DGFPTSALFMIFRLLFKLL----KEQEPSHLV 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D     FR++IY +YKANR  +PE L  Q+  +R   +  G+P I  +  EADD IA
Sbjct: 65  FFLDGRGPNFRSKIYSNYKANRDAMPEPLARQVEPLRQGLRLLGVPVIVPEDAEADDGIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDIEHVI-KKWGIPPEKMV 180
           T      ++   V I+  DKDL Q +     LYD + K EK+  +     + GI P    
Sbjct: 125 TLA-ARFRDIRPVVIVGADKDLKQCLDDRVVLYDPSGKAEKLTTKAAFTAECGIEPASWP 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAE 238
            LQAL GD+ DNIPG+PG+G KTA  +L+    LE +   ++A  +  +K+ E  LE   
Sbjct: 184 DLQALVGDTSDNIPGVPGVGPKTALAILRTLPTLEAVRDNLDAVPVSARKKIEPFLEAVF 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           T    R L  LRTD+     L   +L   +   L +FL++ E   L    A
Sbjct: 244 T---YRALTRLRTDILPDTALADALLAKPDTAGLRAFLESYELRTLAREAA 291


>gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
          Length = 890

 Score =  293 bits (750), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 239/392 (60%), Gaps = 9/392 (2%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 501 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 560

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 561 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 617

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 618 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 677

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 678 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 737

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 738 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 797

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 798 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 857

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 858 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 885



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 158/309 (51%), Gaps = 11/309 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANIE 300
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV A   + DA  ++
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303

Query: 301 PVVLDINTT 309
              L+I+ T
Sbjct: 304 DDTLEISGT 312


>gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276]
 gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s]
 gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768]
 gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222]
 gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074]
 gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301]
          Length = 866

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 183/534 (34%), Positives = 294/534 (55%), Gaps = 27/534 (5%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           ++ LK FF ++     G+  K D   L   GI +    D++L  +++  G      A I+
Sbjct: 350 IALLKDFFADKATQFFGYRSKRDNHALRNSGIDVHVTADLVLAEHLVSGG------AKIS 403

Query: 510 QKWL----SYTRKEILKSRK---SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            + L     + ++ +  S++    S+P+  +    +Q   +  S  +L +   L  KL  
Sbjct: 404 FQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPLQYFGMLASK-LLAIKNYLFVKLEE 462

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           + L  ++E +++P+  V+  ME  G+ +D   L  +  +++K L    + IYDL G +FN
Sbjct: 463 KGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEFN 522

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           + SPKQL DIL+ +L      K K+    T A+ LE +    + II  IL +R   K+ S
Sbjct: 523 IKSPKQLSDILYQRLGIEPVDKAKS----TKAEVLEALE-DRHEIIPKILMFRATEKMLS 577

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPP 741
           TY  +LP  IN  TQR+H  ++   T+TGRL+  +PNLQNIP++++ G+ +R AF +   
Sbjct: 578 TYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQDPNLQNIPVRSERGRSLREAFRVKKD 637

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               ++ADYSQIELR LAH+++   L + F +  DIH   A+++F V +E+V+ Q R  A
Sbjct: 638 NDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQA 697

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF ++YG   + L+  L+I  SEA   +  YF R+P   E+I +T     +N  V T
Sbjct: 698 KAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTT 757

Query: 862 IFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           + GR RI  D  +SP +  R  + R A+N  IQGSAA++ + AM+++   +    L +++
Sbjct: 758 MLGRERILSDWESSPGA--RAASGRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRL 815

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQIHDEL+FEVP EE+     ++   ME A    + L VPL VN+ +  NW E
Sbjct: 816 LLQIHDELLFEVPAEELEEMRSLVQEKMESA----MELSVPLVVNVLIGKNWAE 865



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 167/312 (53%), Gaps = 11/312 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LF++D S F++RA++A P + R  +G    A+ GF   L KL+++   E + +    +FD
Sbjct: 4   LFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPEYVVA----VFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R E+Y DYK+NR +    L  Q+ LV+   +  GI  +E +G EADD+IA+ T
Sbjct: 59  GPNNKQSRQELYADYKSNRDRQLGDLPEQIRLVKQYCELLGISCLEEKGVEADDVIASIT 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A  +GF V I + DKDL+QLVS    +++  KE++I    V+ ++G+PPE++    AL
Sbjct: 119 KKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLSQFGVPPEQIADYLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ G G K A  LL+E+ ++E ++ N  R+   K ++ I +  ET  LS++
Sbjct: 179 VGDSSDNIPGVSGCGPKKAQALLKEFQSVEELVANTERLS-GKTKQMIEDQKETLLLSKR 237

Query: 246 LVMLRTDVPITIPLEHLIL--EDCNGPRLISFLKALEFTKLINRVATTYDCDAAN--IEP 301
           L  L  D+   +  E      +  +  +L +F     F  L+    T     A     +P
Sbjct: 238 LATLHMDLAFPLTTEEFAFSPQAIDSAQLNTFYLQHGFKALVKHAETATSSIAVQTVTDP 297

Query: 302 VVLDINTTENKG 313
           V L     + KG
Sbjct: 298 VTLKTVLEQLKG 309


>gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
          Length = 892

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 239/392 (60%), Gaps = 9/392 (2%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 304 EVDDTLEISGT 314


>gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC]
 gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC]
          Length = 868

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 183/534 (34%), Positives = 294/534 (55%), Gaps = 27/534 (5%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           ++ LK FF ++     G+  K D   L   GI +    D++L  +++  G      A I+
Sbjct: 352 IALLKDFFADKATQFFGYRSKRDNHALRNSGIDVHVTADLVLAEHLVSGG------AKIS 405

Query: 510 QKWL----SYTRKEILKSRK---SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            + L     + ++ +  S++    S+P+  +    +Q   +  S  +L +   L  KL  
Sbjct: 406 FQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPLQYFGMLASK-LLAIKNYLFVKLEE 464

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           + L  ++E +++P+  V+  ME  G+ +D   L  +  +++K L    + IYDL G +FN
Sbjct: 465 KGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEFN 524

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           + SPKQL DIL+ +L      K K+    T A+ LE +    + II  IL +R   K+ S
Sbjct: 525 IKSPKQLSDILYQRLGIEPVDKAKS----TKAEVLEALE-DRHEIIPKILMFRATEKMLS 579

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPP 741
           TY  +LP  IN  TQR+H  ++   T+TGRL+  +PNLQNIP++++ G+ +R AF +   
Sbjct: 580 TYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQDPNLQNIPVRSERGRSLREAFRVKKD 639

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               ++ADYSQIELR LAH+++   L + F +  DIH   A+++F V +E+V+ Q R  A
Sbjct: 640 NDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQA 699

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF ++YG   + L+  L+I  SEA   +  YF R+P   E+I +T     +N  V T
Sbjct: 700 KAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTT 759

Query: 862 IFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           + GR RI  D  +SP +  R  + R A+N  IQGSAA++ + AM+++   +    L +++
Sbjct: 760 MLGRERILSDWESSPGA--RAASGRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRL 817

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQIHDEL+FEVP EE+     ++   ME A    + L VPL VN+ +  NW E
Sbjct: 818 LLQIHDELLFEVPAEELEEMRSLVQEKMESA----MELSVPLVVNVLIGKNWAE 867



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 167/312 (53%), Gaps = 11/312 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LF++D S F++RA++A P + R  +G    A+ GF   L KL+++   E + +    +FD
Sbjct: 6   LFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPEYVVA----VFD 60

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R E+Y DYK+NR +    L  Q+ LV+   +  GI  +E +G EADD+IA+ T
Sbjct: 61  GPNNKQSRQELYADYKSNRDRQLGDLPEQIRLVKQYCELLGISCLEEKGVEADDVIASIT 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A  +GF V I + DKDL+QLVS    +++  KE++I    V+ ++G+PPE++    AL
Sbjct: 121 KKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLSQFGVPPEQIADYLAL 180

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ G G K A  LL+E+ ++E ++ N  R+   K ++ I +  ET  LS++
Sbjct: 181 VGDSSDNIPGVSGCGPKKAQALLKEFQSVEELVANTERLS-GKTKQMIEDQKETLLLSKR 239

Query: 246 LVMLRTDVPITIPLEHLIL--EDCNGPRLISFLKALEFTKLINRVATTYDCDAAN--IEP 301
           L  L  D+   +  E      +  +  +L +F     F  L+    T     A     +P
Sbjct: 240 LATLHMDLAFPLTTEEFAFSPQAIDSAQLNTFYLQHGFKALVKHAETATSSIAVQTVTDP 299

Query: 302 VVLDINTTENKG 313
           V L     + KG
Sbjct: 300 VTLKTVLEQLKG 311


>gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205]
 gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205]
          Length = 899

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 173/528 (32%), Positives = 294/528 (55%), Gaps = 14/528 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
           S L  +  +E   K+ H+ K   L    +G S+ G   D  + +Y+    + S+D+  +A
Sbjct: 375 SALAGWLADETRPKVLHDSKPAVLAFAAHGWSIEGITRDTQIAAYLARPDQRSYDLVDLA 434

Query: 510 QKWLSYTRKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLI--VEKLL 566
            ++L +    +       +  + +  D + +++ +  +   L L   +  +L    E+  
Sbjct: 435 LRYL-HRELRVDTPDTGQLTFEGLGNDGEAEQNLMLRARATLDLADAIDAELSRDGEQSS 493

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +   ++ P++ V++ ME TGI  D   L ++ A+ +  + +  +  Y+  G +FNL SP
Sbjct: 494 RLMAGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAAQGAYEAVGREFNLGSP 553

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYA 685
           KQL +ILF +L  P   + KTG + T A  L+ ++  + +P++ ++L  R ++K+K+T  
Sbjct: 554 KQLQEILFVELGLPKTKRIKTG-YTTDADALQWLHAQNPHPVLGHLLRHRDVAKLKTT-V 611

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
           D L   ++    R+HT ++     TGRL+S EPNLQNIPI+T+ G++IRRAF+     + 
Sbjct: 612 DGLLKSVSD-DGRIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEGYEC 670

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L++ADYSQIE+RI+AH++    L   F +  D H   A+ +F V +E+V+   RR  K +
Sbjct: 671 LLTADYSQIEMRIMAHLSADDVLIDAFNSGRDFHAATASSVFQVPVEEVTTDQRRKIKAM 730

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           N+ + YG+S F L+ QL +   EA   ++ YF  F G+ +Y+++     R +GY ET+ G
Sbjct: 731 NYGLAYGLSAFGLSQQLGVTAEEARGLMEIYFAGFGGVRDYLQEVVARARHDGYTETVLG 790

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  ++ S     R + ER A+NAPIQGSAADI + AM+ V  ++ D  L ++MLLQ+
Sbjct: 791 RRRYLPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMMRVDSAVHDAGLRSRMLLQV 850

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDELVFEV   E     +++   M +A      L VPL+V++    +W
Sbjct: 851 HDELVFEVAPGERERLEELVRREMGEAY----PLSVPLEVSVGDGRDW 894



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/226 (42%), Positives = 130/226 (57%), Gaps = 9/226 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ R     +H AV F
Sbjct: 8   LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDERP----THIAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR E Y  YKA R + P     Q+ LV+    A  +PA+E++G+EADD+IAT T
Sbjct: 64  DVSRRSFRTEKYAAYKAGRSETPADFKGQVSLVKEILAALRVPAVELEGYEADDVIATLT 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A ++G +V I + D+D  QLV    T LY         ++D   V  K+G+PPE    
Sbjct: 124 RQAREQGMSVLITTGDRDAFQLVDDDVTVLYPRKGVSDLARMDPAAVTAKYGVPPELYRD 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           L AL G++ DN+PGIPG+G KTAA  +  YG +E I+  A  IK K
Sbjct: 184 LAALVGETSDNLPGIPGVGPKTAAKWITTYGGVEGIVARADEIKGK 229


>gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70]
 gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s]
 gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923]
 gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2]
 gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150]
 gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023]
          Length = 866

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 183/534 (34%), Positives = 293/534 (54%), Gaps = 27/534 (5%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           ++ LK FF ++     G+  K D   L   GI +    D++L  +++  G      A I+
Sbjct: 350 IALLKDFFADKATQFFGYRSKRDNHALRNSGIDVHVTADLVLAEHLVSGG------AKIS 403

Query: 510 QKWL----SYTRKEILKSRK---SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            + L     + ++ +  S++    S+P+  +     Q   +  S  +L +   L  KL  
Sbjct: 404 FQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPSQYFGMFASK-LLAIKNYLFVKLEE 462

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           + L  ++E +++P+  V+  ME  G+ +D   L  +  +++K L    + IYDL G +FN
Sbjct: 463 KGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEFN 522

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           + SPKQL DIL+ +L      K K+    T A+ LE +    + II  IL +R   K+ S
Sbjct: 523 IKSPKQLSDILYQRLGIEPVDKAKS----TKAEVLEALE-DRHEIIPKILMFRATEKMLS 577

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPP 741
           TY  +LP  IN  TQR+H  ++   T+TGRL+  +PNLQNIP++++ G+ +R AF +   
Sbjct: 578 TYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQDPNLQNIPVRSERGRSLREAFRVKKD 637

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               ++ADYSQIELR LAH+++   L + F +  DIH   A+++F V +E+V+ Q R  A
Sbjct: 638 NDYFLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQA 697

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF ++YG   + L+  L+I  SEA   +  YF R+P   E+I +T     +N  V T
Sbjct: 698 KAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTT 757

Query: 862 IFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           + GR RI  D  +SP +  R  + R A+N  IQGSAA++ + AM+++   +    L +++
Sbjct: 758 MLGRERILSDWESSPGA--RAASGRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRL 815

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQIHDEL+FEVP EE+     ++   ME A    + L VPL VN+ +  NW E
Sbjct: 816 LLQIHDELLFEVPAEELEEMRSLVQEKMESA----MELSVPLVVNVLIGKNWAE 865



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 170/312 (54%), Gaps = 11/312 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LF++D S F++RA++A P + R  +G    A+ GF   L KL+++   E + +    +FD
Sbjct: 4   LFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPEYVVA----VFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R E+Y DYK+NR +  E L  Q+ LV+   +  GI  +E +G EADD+IA+ T
Sbjct: 59  GPNNKQSRQELYADYKSNRDRQLEDLPEQIRLVKQYCELLGISCLEEKGVEADDVIASIT 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A  +GF V I + DKDL+QLVS    +++  KE++I    V+ ++G+PPE++    AL
Sbjct: 119 KKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLSQFGVPPEQIADYLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ G G K A  LL+E+ ++E ++ N  R+   K ++ I +  ET  LS++
Sbjct: 179 VGDSSDNIPGVSGCGPKKAQALLKEFQSVEELVANTERLS-GKTKQMIEDQKETLLLSKR 237

Query: 246 LVMLRTDV--PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN--IEP 301
           L  L  D+  P+T       L+  +  +L +F     F  L+    T     A     +P
Sbjct: 238 LATLHMDLAFPLTTEEFAFSLQAIDSAQLNTFYLQHGFKALVKHAETATSSIAVQTVTDP 297

Query: 302 VVLDINTTENKG 313
           V L     + KG
Sbjct: 298 VTLKTVLEQLKG 309


>gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
 gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
          Length = 932

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 175/513 (34%), Positives = 279/513 (54%), Gaps = 15/513 (2%)

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL--KS 523
           H++K   L L   G S+ G   D  L +Y+   G+ + D+A +    L Y R+++    S
Sbjct: 427 HDVKGPILALAARGFSLAGVTSDTALAAYLALPGQRTFDLADLV---LRYLRRDLRPETS 483

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
               + ID   ++      +  +   L+L   L   L       +   ++ P++ V++ M
Sbjct: 484 ETGQLTIDGSDEAAAAAADVVRARATLELADALDADLARRGATALLRDVELPLVTVLAGM 543

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  GI  D D L  +       +  +     ++ G  FNLSSPKQL  ILF +L  P   
Sbjct: 544 ERAGIAADTDHLLDLQKHYGAQVTEVAAQAQEIVGRPFNLSSPKQLQVILFDELGLPKTK 603

Query: 644 KTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           K KTG + T A  L  ++   D+P++  +L  R +++++ T  DSL   I+    RVHT 
Sbjct: 604 KIKTG-YTTDADALAWLSTQADHPLLAVLLRHRDVARLR-TVVDSLIPMIDD-AGRVHTT 660

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761
           ++     TGRL+S +PNLQNIP++T  G++IRRAF+     + L++ADYSQIE+RI+AH+
Sbjct: 661 FNQMIAATGRLSSADPNLQNIPVRTAEGRQIRRAFVVGAGYESLLTADYSQIEMRIMAHL 720

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    L   F +  D+H  VAA+ FG+ +++V P++RR  K +++ + YG+S F LA QL
Sbjct: 721 SGDKGLIGAFASGEDLHTFVAAQAFGIPVDEVDPELRRRIKAMSYGLAYGLSAFGLAGQL 780

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I   EA + ++ YF RF G+ +++       R +GY ETI GRR +  ++ S  +  R 
Sbjct: 781 GIHPEEAREQMEAYFARFGGVRDFLRGVVERARADGYTETILGRRRYLPDLTSDNTQRRQ 840

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           + ER A+NAPIQGSAADI + AM+ V + L +H   +++LLQ+HDELV E+   E     
Sbjct: 841 MAERMALNAPIQGSAADIIKIAMLGVDRKLREHGARSRLLLQVHDELVLEIAPGERADVE 900

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++   M  A      + VPL+V++     W +
Sbjct: 901 ALVRTEMGGAY----QMSVPLEVSVGSGRTWDD 929



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 140/287 (48%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ R     +H AV +
Sbjct: 46  LLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDERP----THVAVAW 101

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+  Y +YKA R + P   + Q+ L+     +  +P +   G+EADD+IAT  
Sbjct: 102 DLPTPTFRHTQYAEYKAGRAETPADFVGQVSLIHQVCDSLAVPGVTAAGYEADDVIATLA 161

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                 G  V +++ D+D +QLV     +  T +      +     V  K+G+ P +   
Sbjct: 162 TQGAALGMQVLVVTGDRDALQLVDERVTVLMTRRGISDMTRFTPAEVEAKYGLTPTQYPD 221

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P +PG+G KTA   +Q++G+L  ++  A  +  K         A   R
Sbjct: 222 FAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAALVDRADEVGGKAGASLRAHLANVIR 281

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +R L  L  DVP+ +    L L   +   +      L+F  L  R+
Sbjct: 282 -NRSLTELARDVPLAVTPTDLQLRPWDREAVHQLFDTLQFRVLRERL 327


>gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4]
 gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4]
          Length = 914

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 190/604 (31%), Positives = 314/604 (51%), Gaps = 37/604 (6%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
           +  W+    + G  S   +  T   +     AIA++  D         E  +I  +  T 
Sbjct: 335 VADWLSLHASTGERSGVSVVGTRTPYGGDVTAIAVAAADG--------EGAYIATASATP 386

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYV 495
           +D              L  +  +    K  H  K+    L   G  + G   D  L +Y+
Sbjct: 387 EDEKA-----------LGDWLADAEQPKALHEAKWAMHALRGRGWVLGGLTSDTALAAYL 435

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS-QVQEHAIE----NSNVIL 550
           +  G+ + ++  ++   L Y R+E+         +  + D+ QV   A E    ++  +L
Sbjct: 436 VRPGQRTFNLDDLS---LRYLRRELRVEETGQEQLSLLDDADQVDAEAAETEILSARAVL 492

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            L   L  +L   +   +   ++ P+++V++ +E +GI +D   L  + +  +  +    
Sbjct: 493 DLAAALDTELDNIESTALLSEMELPLLEVLAVIEASGIAVDGTHLHDLQSRFAAEVSEAA 552

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIK 669
           E  Y + G++ NL SPKQL  +LF +L+ P   KTKT  + T A+ L+ +     +P ++
Sbjct: 553 EAAYGVIGKQINLGSPKQLQVVLFDELEMPKTKKTKT-GYTTDAEALQNLFEKTSHPFLE 611

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           ++L  R  +++K T  D L   + +   R+HT ++     TGRL+S EPNLQNIP++TD 
Sbjct: 612 HLLAHRDATRLKVT-VDGLLKTVAE-DGRIHTTFNQTVAATGRLSSTEPNLQNIPVRTDA 669

Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G++IR  F+       L++ADYSQIE+RI+AH++    L + F    D+H  V A  FGV
Sbjct: 670 GRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDAGLIEAFNTGEDLHSFVGARAFGV 729

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
            IE+V+P++RR  K +++ + YG+S F LA QL+I   EA   ++ YF RF G+ +Y+ +
Sbjct: 730 PIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHE 789

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
                R++GY  T++GRR +  ++ S     R + ERAA+NAPIQG+AADI + AMI+V 
Sbjct: 790 VVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQ 849

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           +SL +  L ++MLLQ+HDELV EV + E     Q++   M  A    I L VPL V++  
Sbjct: 850 RSLREAGLKSRMLLQVHDELVLEVVDSEREQVEQLVRDKMSSA----IELSVPLDVSVGT 905

Query: 969 SNNW 972
             +W
Sbjct: 906 GRSW 909



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 178/337 (52%), Gaps = 37/337 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  + K H G   NA+ GF +ML  LL++ +     +H A  F
Sbjct: 27  LMLLDGHSLAFRAFYALPAENFKTHSGQVTNAVYGFTSMLINLLRDEQP----THVAAAF 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E +P+YKANR K P+    Q+ + +    A GIP +  +GFEADDIIAT T
Sbjct: 83  DVSRQTFRAEKFPEYKANRSKAPDEFKGQVEITKDVLGALGIPVMAEEGFEADDIIATLT 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
             AE  G+ V +++ D+D +QLV+   T LY   K+   D+       V +K+G+ P + 
Sbjct: 143 TQAEALGYRVLVVTGDRDSLQLVTDGVTVLYP--KKGVSDLTRFTPAAVEEKYGLTPAQY 200

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEY 236
               AL GD  DN+PGIPG+G KTA   ++EYG+L  ++ N  +++ K     REN+   
Sbjct: 201 PDFAALRGDPSDNLPGIPGVGEKTATKWIKEYGDLVGLVDNVDKVRGKVGDALRENL--- 257

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT----- 291
                L+R+L  +  DVP+    + L+L   +  ++ +    LEF  L +R+  T     
Sbjct: 258 -PNVLLNRELTEMVRDVPLPYTPDQLMLAQWDREKIHALFDDLEFKVLRDRLFATLAPVE 316

Query: 292 ------YDCDAANIEP------VVLDINTTENKGIAI 316
                 ++   + +EP      + L  +T E  G+++
Sbjct: 317 AEAEEGFEVRGSALEPGAVADWLSLHASTGERSGVSV 353


>gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN]
          Length = 870

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 195/535 (36%), Positives = 298/535 (55%), Gaps = 24/535 (4%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           +IL  LK FF  E     G+N+K D   L   GI +R    D+ L  ++ + G      +
Sbjct: 351 KILPILKDFFLREDLTFYGYNLKRDCHALLNAGIVIREISYDLALAEHLTNGGGKISFQS 410

Query: 507 SIAQKWLSYTRKEILKSRKS-SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK- 564
            +     + T     K   +  +PI ++ + Q +++  E     L  +L +    I+E+ 
Sbjct: 411 LLVNHGFTETAHRFAKEWGNLGLPIGRLPE-QPEQYFGE-----LVAYLPIIKDAILEEI 464

Query: 565 ----LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
               L H+   ++ P+  V+  ME  G+ +D + L  + A     L  L E IYDLSG  
Sbjct: 465 NRKNLNHILSDIEMPLEKVLVSMERAGVPLDVEELAILEALFETELAVLTEEIYDLSGRP 524

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN+ SPKQL DIL+ +L      K K+    T A+ LE +   ++PII+ +L +R + K+
Sbjct: 525 FNIKSPKQLSDILYNELGLRPIDKAKS----TRAEVLEALRS-EHPIIEKLLAFRTIEKL 579

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-IS 739
            STY  +LP  ++  TQR+H  +    T+TGRLA  +PNLQNIPI+++ G  +R+AF +S
Sbjct: 580 LSTYVKALPKQVDSHTQRIHPSFDQTGTVTGRLACRDPNLQNIPIRSERGILLRKAFRLS 639

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                 +SADYSQIELR LAH+++   L   FE+  DIH   A+++F V +E+VS + R 
Sbjct: 640 EKNSYFLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRM 699

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKT+NF I+YG   F LA  L+I   EA + I+ YF R+P I  ++E+T     ++  V
Sbjct: 700 QAKTVNFGIVYGQQAFGLAKVLKISVGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRV 759

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T+ GR    D  N    S R  + R A+N  IQGSAA++ + AM+ + ++++  ++ ++
Sbjct: 760 TTMLGRERIIDSWNEFPGS-RAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSR 818

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           MLLQIHDEL+FEVPEEEI    +++   ME A    + L VP+ VNI +  NW E
Sbjct: 819 MLLQIHDELLFEVPEEEIEEMQRLVREKMESA----MTLSVPIAVNILIGKNWAE 869



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 152/258 (58%), Gaps = 8/258 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LF++D S FI+RA++A P + + H G    A+ GF   L KL++    E + S    +FD
Sbjct: 4   LFVLDASGFIFRAYFALPEM-KNHQGQATQAVFGFIRSLNKLIKEFSPEYMIS----VFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R  IY DYK+NR K  E + PQ+ LV+      G+  +E +  EADD+IA+  
Sbjct: 59  GPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIASIA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184
             A +E + V + + DKDL+QLV+     ++   ++ +  I  VI+++GIPP  +    A
Sbjct: 119 KKAREENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISEVIERYGIPPGNIPDYLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PG G K AA LL+++G++E +L N   +K   +   + E  ET +LS+
Sbjct: 179 LVGDSSDNIPGVPGCGPKKAAALLKQFGSVEGLLENLDAVKGLSQT-MLSERQETLKLSK 237

Query: 245 KLVMLRTDVPITIPLEHL 262
           +L +L +++PI +P+E L
Sbjct: 238 RLALLDSNIPIPVPIESL 255


>gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17]
 gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46]
 gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
 gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
          Length = 904

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 168/497 (33%), Positives = 285/497 (57%), Gaps = 11/497 (2%)

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537
           G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E  + ++ S+  D  +D++
Sbjct: 410 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 469

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +  I  +  ++ L   L  +L       +   ++ P+  V+++ME  GI +D  +L +
Sbjct: 470 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 529

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + ++    +    +  Y + G++ NL SPKQL  +LF +L  P   +TKTG + T A  L
Sbjct: 530 LQSQFGDQIRDAADAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 588

Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + + +   +P ++++L  R ++++K T  D L   +     R+HT ++     TGRL+S 
Sbjct: 589 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 646

Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+TD  ++IR AF+      +L++ADYSQIE+RI+AH++    L + F    
Sbjct: 647 EPNLQNIPIRTDASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 706

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +  Y
Sbjct: 707 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 766

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+       R++GY  T+ GRR +  E++S    +R   ERAA+NAPIQGS
Sbjct: 767 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGS 826

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI V K+L + +LA++MLLQ+HDEL+FE+   E      ++   M  A    
Sbjct: 827 AADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAY--- 883

Query: 956 INLRVPLKVNIKVSNNW 972
             L VPL+V++    +W
Sbjct: 884 -PLDVPLEVSVGYGRSW 899



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 13/302 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H A  F
Sbjct: 17  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 72

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IAT  
Sbjct: 73  DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 132

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P +   
Sbjct: 133 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++ K         A   R
Sbjct: 193 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR 252

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  DVP+    + L L+  +   +      LEF  L +R+   +D  AA   P
Sbjct: 253 -NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGP 308

Query: 302 VV 303
            V
Sbjct: 309 EV 310


>gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum]
          Length = 872

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/426 (38%), Positives = 252/426 (59%), Gaps = 14/426 (3%)

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
           NV+ +LW       + E LL + + ++ P+  ++ QME+ GI+ID+  L+     I    
Sbjct: 455 NVLSKLW----EDAVKEGLLELVQSIEIPLGRILYQMEVLGIRIDRQALESARESIEALA 510

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             LEE IY L+G +F + SPKQ+G+IL+ KL  P+  K KTG + T  + L  ++ G +P
Sbjct: 511 RELEEEIYRLAGSRFTILSPKQVGEILYGKLGLPTARKGKTG-YSTDEETLTGLS-GLHP 568

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           + + IL +RQ+ K+ STY D +   ++ +  R+H  ++   T TGRL+S  PNLQNIP++
Sbjct: 569 LPEKILAYRQMKKLLSTYVDPISRGVDAQG-RLHGQFNQTVTATGRLSSSNPNLQNIPMR 627

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           +  G++IR+ FI+   + L+SADYSQIELR+LAH ++   L  VFE + DIH   A  +F
Sbjct: 628 SPAGREIRKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERNEDIHARTARLLF 687

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G   + V+P+ RR AKTINF I+YG+S F L+  L +   EA  +I RYF  FP +    
Sbjct: 688 G---DPVTPETRRKAKTINFGILYGMSAFSLSLDLGVEPPEAQAFIDRYFGAFPKVGPLF 744

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           +      ++ G V TI GR+    E+++P    R   ER A+N  +QGSAAD+ +++M+ 
Sbjct: 745 DSILEEAKKTGEVRTILGRKRRIPELSAPDRRSREYGERMAVNTVLQGSAADLIKKSMVD 804

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
             +  +D      +L+Q+HDEL+FEV E+ +  AS  I   ME A    + L+VPL V +
Sbjct: 805 FGQVRKDRPEVGDLLVQVHDELLFEVREDNLEDASGTIRSLMEGA----LRLKVPLIVQV 860

Query: 967 KVSNNW 972
               NW
Sbjct: 861 GHGKNW 866



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 162/294 (55%), Gaps = 13/294 (4%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG  +I+RA+++    ++R   GLP +AI  F NML  +L    KE   S  AV+F
Sbjct: 26  LVLMDGFGYIFRAYHSRVTFVTRA--GLPTDAITVFGNMLLSVL----KELSPSAMAVVF 79

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           +      R+EI P+ KANRP+ P   L Q+P +    +  G+P +   G+EADD IA   
Sbjct: 80  ESRTGNVRSEILPEIKANRPEPPSDFLQQIPYIERLIRGIGVPLLSTDGYEADDTIAALA 139

Query: 126 ------YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
                 +        V ++S+DKDL+ LVS    +YD + ++ +    V +KWG+ P ++
Sbjct: 140 LKWLNHHDRTNVPCHVVVLSSDKDLLTLVSERVWVYDPMTKKVLGPSDVREKWGVEPWQI 199

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L ALTGD+ DNIPG+PGIG KTAA LL   G ++ +  +   +  ++ R  + E+ E 
Sbjct: 200 PDLLALTGDTADNIPGVPGIGQKTAAKLLGNQGTIDTLYEDLDNVVPERIRALLREHRER 259

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
              ++K+ +L +D+ +++  E L L   +   L S L+ LE   L++RV  T +
Sbjct: 260 VFRNKKVTVLHSDLALSLEPESLSLSPPDMDSLKSLLQELEAPGLLSRVHRTLE 313


>gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805]
 gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805]
          Length = 988

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 185/519 (35%), Positives = 288/519 (55%), Gaps = 46/519 (8%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTR----------KEILKSRKSSIPIDKISDSQ 537
           D +L  Y+ D+  + H +  +A++    T           K+   S  + +PID     Q
Sbjct: 482 DTLLADYLRDAA-AKHSLDVMAERDYGITPTVFSDLVGKPKDGKASCFAEVPID-----Q 535

Query: 538 VQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
              +   + ++  +L L LR +L    ++L ++ +R++ P+  V++ ME TGI+ID   L
Sbjct: 536 AALYCAMDVHLTRKLALDLREQLQTSGQQLTNLLDRVELPLEPVLALMEATGIRIDLTYL 595

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTT 653
             +S E+ + L  LE N    +G  FNL+SPKQLG++LF  L        +TKTG + T 
Sbjct: 596 DTLSKEMGETLTRLEANAKQAAGVDFNLASPKQLGELLFETLGLDRKKSRRTKTG-YSTD 654

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  L+++   D+P++  +LE R LSK+KSTY D+LP  +   T RVHT ++ A T TGRL
Sbjct: 655 ATVLDKL-ADDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAVTATGRL 713

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S  PNLQNIPI+T+  ++IR+AF+      L+SADYSQIELRIL H++    L Q + +
Sbjct: 714 SSSNPNLQNIPIRTEYSRRIRKAFLPQEHWTLLSADYSQIELRILTHLSGEEVLQQAYRD 773

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H + A  +   + ++++   RR  KTINF +IYG+   R A +  + ++EA +++ 
Sbjct: 774 GDDVHALTARLLL--DKDEITADERRLGKTINFGVIYGMGAQRFARETGVSQAEAKEFLS 831

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYD-------------EIN---SP 875
           +Y  R+P +  ++E  +      GYVETI GRR   H+D             EI+   + 
Sbjct: 832 KYRERYPKVFAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLGKDPFEIDLDVAR 891

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           +  +     RAA NAPIQGS+ADI + AMI +  +L+   L  ++LLQ+HDELV EV   
Sbjct: 892 RGGMEAQQLRAAANAPIQGSSADIIKLAMIQLQAALQQQSLPARLLLQVHDELVLEVEPS 951

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +     ++V +ME A    + L VPL       +NW E
Sbjct: 952 ALEDVKALVVSTMETA----VELSVPLVAETGSGSNWME 986



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 133/276 (48%), Gaps = 32/276 (11%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG S  +R+FYA        L+ K DG P +   GF   L    +  + E +A   
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGFLKALLDNSKGLKPEGVA--- 65

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120
            + FD    TFR++   +YKA+R   PE+    L  L  +  +   +P     G+EADD+
Sbjct: 66  -IAFDTAEPTFRHQADANYKAHRDVAPEVFFQDLDQLQTILRERLKLPLCLAPGYEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170
           + T    A   G+ V I+S D+DL QLV        LY        +     ID   V+ 
Sbjct: 125 LGTLANRAATSGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPTLIDEAGVVA 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL----------IN 220
           K G+ P+K+V L+ALTGDS DNIPG+ G+G KTA  LL+E  +L+ +             
Sbjct: 185 KLGVMPDKVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENNDLDGVYRVLEEVEAEGPK 244

Query: 221 ASRIKQKKRRENILEY-AETARLSRKLVMLRTDVPI 255
           ASR   K   +  L    + A LSR L  +  D+P+
Sbjct: 245 ASRGAVKGALKGKLGADRDKAYLSRHLAEILVDIPL 280


>gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
 gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
          Length = 918

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 249/423 (58%), Gaps = 7/423 (1%)

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           I +++  L+ ++  + L  V+  ++ P+++V++ ME TG+ +D + LK   AE+S     
Sbjct: 499 IFKVYDKLKSQIEEDDLQKVFYEIEMPLVEVIASMENTGVWLDTEFLKTYEAELSNIEAE 558

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           L + IY+L+G +FN++SPKQLG++LF KL      KTK G + T A+ L+++    +PII
Sbjct: 559 LLDKIYELAGFEFNVNSPKQLGEVLFEKLNLEPKVKTKRG-YSTNAEVLQKLR-KTHPII 616

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
             ILE+R++SK+ STY            +    F  + ++ TGR+A + P LQ IP+KTD
Sbjct: 617 DLILEFRKVSKLNSTYVRGFMGFKGTDGKVRPEFLQIGAS-TGRMACINPALQTIPVKTD 675

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           +G++IR+AF +   +  +SADYSQIELRIL H++    L   F++  DIH  VA  + G 
Sbjct: 676 MGKRIRKAFKAGKDRVFVSADYSQIELRILGHVSCDEGLINAFKSGEDIHEAVAVNVLGA 735

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
               VS  +R  AK INF +IYG+S F L+ +L I R +A  YI  YF +   ++EY+E 
Sbjct: 736 QKGAVSKAVRSKAKAINFGVIYGMSDFGLSNELEISRKDAKKYIDEYFAKHRAVYEYMEA 795

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
            K+  +Q G V T  GR     EIN+    +RN+ ER A+N+PIQG  ADI + AM +V+
Sbjct: 796 QKSIAKQTGAVRTETGRIRKIPEINAQNIMVRNLGERLAMNSPIQGMGADIMKLAMNNVY 855

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           ++++   L  K++LQIHDELV +    +     +++   ME A     NL+  L  N + 
Sbjct: 856 RAIQKQGLDAKIVLQIHDELVIDASVSDGEKVKKLLKDEMEAAY----NLKTGLIANPQS 911

Query: 969 SNN 971
             N
Sbjct: 912 GEN 914



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 171/336 (50%), Gaps = 24/336 (7%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S  +RA+YA    +   DG+  NAI GF +ML+K + +   + IA    V FD  
Sbjct: 8   IIDGNSLFFRAYYAIKA-NMSADGMATNAIYGFLSMLYKSINDFSPDYIA----VAFDLG 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR+E + DYKANR K  + LL Q+P+++    A  I  ++ + FE DDII ++    
Sbjct: 63  GKTFRHEKFDDYKANRRKTDDELLMQIPVIKEILAAMNIKILQKKAFEGDDIIGSFARFV 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDIEHVIK---KWGIPPEKMVCLQA 184
           E +   V IIS DKD+ QL+S  T +  T +    IDI  + K   ++   P+  +  +A
Sbjct: 123 ESDDVEVIIISGDKDMFQLISDNTKIAYTKRGISNIDIYDIQKFEDEYNFAPKHFIDYKA 182

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET-ARLS 243
           + GDS DN  G+ GIG K A  L+ +Y  +ENI  N   I  K +    LE ++  A + 
Sbjct: 183 IMGDSSDNYKGVKGIGDKGARNLVTKYQTIENIYQNIDEISGKTKLA--LENSKMQAFMG 240

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           ++L  +  ++ + + L+ + L D +   L S  K  +    + ++ T    +  N     
Sbjct: 241 KELATIIVNLDLGLTLDDVKLVDPDFDTLASIYKNYKLNTFLKKLETNGCVNGTN----- 295

Query: 304 LDINTTENKGIAIETEIDRD-----TTIKTSQFSSL 334
            D  T E KG+ +  ++ RD      T+K +  + L
Sbjct: 296 -DDETDELKGM-LSIDVSRDVGSLEATLKKADVADL 329


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 183/515 (35%), Positives = 300/515 (58%), Gaps = 27/515 (5%)

Query: 465 IGHNIKYD-KLVLHRYGI-SMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR---K 518
           IGHN+KYD +++ + + +   + + D M+++++ + S R + D+  +A++   Y     +
Sbjct: 381 IGHNLKYDFEIIKNNFNLLPPKNYADTMILAWLKEPSLRVNMDV--LAKRIFDYETLHFE 438

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           +++K  +S   +D     +  ++A E++ + L+ +L     L  + LL + ++ +   I 
Sbjct: 439 DLVKKGESFAGVDV---EKACKYAAEDAYITLRFYLYFLKNL-EKSLLELAQKSEFEFIK 494

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+  ME  GI++D   L+ +    ++++  L E IYDL+GEKFN++SPKQ+GDILF KLK
Sbjct: 495 VLIMMENNGIKLDIQKLESLMQNFNQDIKILSEKIYDLAGEKFNINSPKQVGDILFEKLK 554

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK-RTQ 697
            PSG K+KTG + T  + L  +   ++ IIK IL +R+L+K+  TY + L     K    
Sbjct: 555 LPSGKKSKTG-YSTDEKVLNNL-IDEHLIIKEILAYRELAKLVGTYCEPLLKLAKKDENS 612

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+++ +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR+
Sbjct: 613 RIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKTCFVAKEGFSFISLDYSQIELRM 672

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH ++   L + F N  DIH   A  IFG    + +   R  AK+INF +IYG+    L
Sbjct: 673 LAHFSEDEKLLEAFSNDEDIHAKTAIMIFG----ESNYHTRSIAKSINFGLIYGMGYKTL 728

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           +  L+I    A +YI++YF  F  I  Y EK KN  +QNG+++T+ GR+ ++D  N+   
Sbjct: 729 SQNLKIEAKLAKEYIEKYFKNFTSIKTYFEKVKNEAKQNGFIKTLLGRKRYFDFENAKPM 788

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            I  + ER +IN+ +QGSAADI + AMI + K L+++K   +++LQIHDEL+FEV +E  
Sbjct: 789 QIA-MYERESINSTLQGSAADIIKLAMIKIAKDLDENK---RLILQIHDELIFEVKDEFC 844

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              ++     ME      + L+V LK +  ++ NW
Sbjct: 845 DEFAKNASDIMENI----VKLKVKLKTSSSIAKNW 875



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 151/292 (51%), Gaps = 17/292 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R FYA   L +   G P N I+GF N ++ L    + E  +       D
Sbjct: 4   LTIIDTFGFFFRLFYALKGL-KNSKGEPSNMISGFANFIYSL----KNEHPSDMIIFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  +   +G+EADDIIA+   
Sbjct: 59  SKGKTFRSEIDPNYKINRTPPPPDLLAQIPICIQMIEKMGFSSFSCEGYEADDIIASLVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             E +   + II+ DKDL QL+      +Y  + +   +    ++K+G+ P ++    AL
Sbjct: 119 ECENKDIFIRIITQDKDLYQLIKDDKVSIYSPISKNDYNEAGCLEKYGVKPSQIRDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+ ++E I  N + ++ ++ R  +LE  E A LS+K
Sbjct: 179 CGDSSDNIPGVKGIGAKGAKNLLDEFESIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPITIPLEHLILEDCNGP------RLISFLKALEFTKLINRVATT 291
           L  L  ++ +    ++++L +C  P      +++  L+  E   L+ ++ T 
Sbjct: 239 LASLYENLDV----KNMLL-NCEYPKDEPLLKIMDVLEHYELNALLKKLRTN 285


>gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 894

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 179/544 (32%), Positives = 295/544 (54%), Gaps = 33/544 (6%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502
           TLT +    L  +  +  F K  H++K     +   G  + G   D  L +Y++  G+ S
Sbjct: 364 TLTDDDERALSAWLADPAFPKAAHDVKGPLHAVRDRGWKLAGLSSDTALAAYLVRPGQRS 423

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            D+  +  ++L   R+   +  +    +  + D +  +     S        L+R + + 
Sbjct: 424 FDLPDLVVRYLQ--RELRAEQGEDDGQLSLLEDEEQTKAGAAASE-------LVRARAVA 474

Query: 563 E---KLLHVYERLDKP---------MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           E    L     R+D           ++ V+S++E  GI +D D L  + A  +  +    
Sbjct: 475 ELADTLDDELARIDSTRLLTELELPLLQVLSELEAAGIAVDADQLAGLGAHFAARVKQAA 534

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIK 669
           ++ Y + G++ NL SPKQL  +LF +L  P   +TKTG + T A+ L+ +    ++P ++
Sbjct: 535 QDAYGVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDAEALQSLYEKTEHPFLQ 593

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           ++LE R  +++K+T  D L   I     R+HT  +     TGRL+S EPNLQNIPI+T+ 
Sbjct: 594 HMLEHRDATRLKTT-VDGLVKSIAD-DGRIHTTLNQTIAATGRLSSTEPNLQNIPIRTEE 651

Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G++IR  F+      +L++ADYSQIE+RI+AH++    L + F    D+H  VA+  FGV
Sbjct: 652 GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGV 711

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
            I++V  ++RR  K +++ + YG+S F LA QLRI   +A + ++ YF RF  + +Y+  
Sbjct: 712 PIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRISTEDAREQMEAYFARFGSVRDYLRD 771

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
             +  R++GY  TI GRR +  ++NS     R++ ER A+NAPIQGSAADI + AM+ VH
Sbjct: 772 VVDQARKDGYTSTILGRRRYLPDLNSDNRQRRDMAERMALNAPIQGSAADIIKVAMLDVH 831

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           ++L    L ++MLLQ+HDEL+ EV + E     +++   M  A      L VPL+V++ V
Sbjct: 832 EAL--RPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA----YALDVPLEVSVGV 885

Query: 969 SNNW 972
             +W
Sbjct: 886 GGSW 889



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 157/306 (51%), Gaps = 16/306 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           ++  L L+DG S  YRAFYA P  + +   G   NA+ GF +ML  LL++ +     +H 
Sbjct: 4   EDRRLLLIDGHSMAYRAFYALPKENFQTGTGQHTNAVYGFTSMLINLLRDEQP----THL 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    TFR+E + DYKA R   P+    Q+ L++    A  +P +  + +EADD+I
Sbjct: 60  AVAFDVSRKTFRSETFADYKATRGTTPDEFKGQVSLIQDVLAALCVPTLSKEHYEADDVI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDT--VKE-EKIDIEHVIKKWGIPPE 177
           AT T  A  EGF V+I + D+D +QLV+   T LY T  V E  +   + V  K+G+ PE
Sbjct: 120 ATLTTQATGEGFKVSICTGDRDALQLVTDAVTVLYPTKGVSELTRFTPQAVSDKYGLSPE 179

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENIL 234
           +     AL GD  DN+P IPG+G KT    +Q++G+L  ++     +K K     R N+ 
Sbjct: 180 QYPDFAALRGDPSDNLPKIPGVGEKTVTKWIQQFGSLAGLVDRVDEVKGKAGDALRANL- 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                  L+R+L  L  DVP+ +    L +   +   +      LEF  L  R+ +T   
Sbjct: 239 ---SAVLLNRQLTELVKDVPLELAPADLAVRQWDRDAVHRLFDDLEFRVLRERLFSTLSA 295

Query: 295 DAANIE 300
               +E
Sbjct: 296 AEPEVE 301


>gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
 gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 895

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 179/544 (32%), Positives = 295/544 (54%), Gaps = 33/544 (6%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502
           TLT +    L  +  +  F K  H++K     +   G  + G   D  L +Y++  G+ S
Sbjct: 365 TLTDDDERALSAWLADPAFPKAAHDVKGPLHAVRDRGWKLAGLSSDTALAAYLVRPGQRS 424

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            D+  +  ++L   R+   +  +    +  + D +  +     S        L+R + + 
Sbjct: 425 FDLPDLVVRYLQ--RELRAEQGEDDGQLSLLEDEEQTKAGAAASE-------LVRARAVA 475

Query: 563 E---KLLHVYERLDKP---------MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           E    L     R+D           ++ V+S++E  GI +D D L  + A  +  +    
Sbjct: 476 ELADTLDDELARIDSTRLLTELELPLLQVLSELEAAGIAVDADQLAGLGAHFAARVKQAA 535

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIK 669
           ++ Y + G++ NL SPKQL  +LF +L  P   +TKTG + T A+ L+ +    ++P ++
Sbjct: 536 QDAYGVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDAEALQSLYEKTEHPFLQ 594

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           ++LE R  +++K+T  D L   I     R+HT  +     TGRL+S EPNLQNIPI+T+ 
Sbjct: 595 HMLEHRDATRLKTT-VDGLVKSIAD-DGRIHTTLNQTIAATGRLSSTEPNLQNIPIRTEE 652

Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G++IR  F+      +L++ADYSQIE+RI+AH++    L + F    D+H  VA+  FGV
Sbjct: 653 GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGV 712

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
            I++V  ++RR  K +++ + YG+S F LA QLRI   +A + ++ YF RF  + +Y+  
Sbjct: 713 PIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRISTEDAREQMEAYFARFGSVRDYLRD 772

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
             +  R++GY  TI GRR +  ++NS     R++ ER A+NAPIQGSAADI + AM+ VH
Sbjct: 773 VVDQARKDGYTSTILGRRRYLPDLNSDNRQRRDMAERMALNAPIQGSAADIIKVAMLDVH 832

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           ++L    L ++MLLQ+HDEL+ EV + E     +++   M  A      L VPL+V++ V
Sbjct: 833 EAL--RPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA----YALDVPLEVSVGV 886

Query: 969 SNNW 972
             +W
Sbjct: 887 GGSW 890



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 157/306 (51%), Gaps = 16/306 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           ++  L L+DG S  YRAFYA P  + +   G   NA+ GF +ML  LL++ +     +H 
Sbjct: 5   EDRRLLLIDGHSMAYRAFYALPKENFQTGTGQHTNAVYGFTSMLINLLRDEQP----THL 60

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    TFR+E + DYKA R   P+    Q+ L++    A  +P +  + +EADD+I
Sbjct: 61  AVAFDVSRKTFRSETFADYKATRGTTPDEFKGQVSLIQDVLAALCVPTLSKEHYEADDVI 120

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDT--VKE-EKIDIEHVIKKWGIPPE 177
           AT T  A  EGF V+I + D+D +QLV+   T LY T  V E  +   + V  K+G+ PE
Sbjct: 121 ATLTTQATGEGFKVSICTGDRDALQLVTDAVTVLYPTKGVSELTRFTPQAVSDKYGLSPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENIL 234
           +     AL GD  DN+P IPG+G KT    +Q++G+L  ++     +K K     R N+ 
Sbjct: 181 QYPDFAALRGDPSDNLPKIPGVGEKTVTKWIQQFGSLAGLVDRVDEVKGKAGDALRANL- 239

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                  L+R+L  L  DVP+ +    L +   +   +      LEF  L  R+ +T   
Sbjct: 240 ---SAVLLNRQLTELVKDVPLELAPADLAVRQWDRDAVHRLFDDLEFRVLRERLFSTLSA 296

Query: 295 DAANIE 300
               +E
Sbjct: 297 AEPEVE 302


>gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss]
 gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14]
 gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg]
          Length = 866

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 303/563 (53%), Gaps = 42/563 (7%)

Query: 431 LSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
           L +H    S G      EI     ++ LK FF +      G+  K D   L  +GI +  
Sbjct: 326 LRLHGVALSGGDEVFYIEISGDQEIALLKAFFADATTKFFGYRTKRDNHALKNHGIDVHV 385

Query: 486 FEDIMLMSYVLDSG----------RSSH--DIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             D++L  ++++ G           S H  + A  A++W +           SS+P+  +
Sbjct: 386 TADLVLAQHLVNGGAKISFQTLLVESGHIQEAAFFAKEWGA-----------SSLPVQNL 434

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  Q   I  S  +  +   L  KL  + L  +++ +++P+ +++  ME  G+ +D +
Sbjct: 435 PQNPAQYFGIFVSR-LPSIKNYLFEKLEEKGLKSIFKNVEQPLEEILFAMECAGMPLDSE 493

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L  +  ++SK L +  + IYDL+G +FN+ SPKQL D+L+ +L      K K+    T 
Sbjct: 494 GLLVLDRDLSKELETYTQEIYDLAGCEFNIKSPKQLSDVLYHRLGIKPVDKAKS----TK 549

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+ LE +  G + II  IL +R   K+ STY  +LP  I+  T RVH  ++   T+TGRL
Sbjct: 550 AEVLEALE-GSHEIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQVGTVTGRL 608

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +  +PNLQNIP++ + G+ +R AF  +      ++ADYSQ+ELR LAH+++   L + F+
Sbjct: 609 SCQDPNLQNIPVRYERGKSLREAFRFTKENDYFLAADYSQVELRFLAHLSQDETLKRAFD 668

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   A+++F V +++V+ + R  AK +NF + YG   + L+  L+I  +EA   I
Sbjct: 669 SGEDIHTFTASQVFNVPLDQVTERQRYQAKAVNFGLAYGQQAYGLSKNLKISVNEAQGLI 728

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAP 891
             YF R+P   E+I  T     +   V T+ GR RI  D  +SP +  R  + R A+N  
Sbjct: 729 DAYFARYPQASEFITHTIEQASKEQKVTTMLGRERILSDWESSPGA--RAASGRLAVNTR 786

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAA++ + AM+++ + L    L +++LLQIHDEL+FEVP+EE+     ++   ME A
Sbjct: 787 IQGSAAELIKLAMLNISRELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESA 846

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               ++L VPL VN+ +  NW E
Sbjct: 847 ----MSLSVPLVVNVLIGKNWAE 865



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/257 (37%), Positives = 150/257 (58%), Gaps = 7/257 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LF++D S FI+RA++A P + R  +G    A+ GF   L KL+ +   E    +   +FD
Sbjct: 4   LFILDASGFIFRAYFALPEM-RGPNGGSTQAVFGFIRSLDKLVNDLSPE----YMVAVFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R E+Y DYK+NR +  E L  Q+ LV+   +  GIP +E +G EADD+IA+  
Sbjct: 59  GPNNKQSRQELYADYKSNRDRKFEDLPEQIALVKQYCELIGIPCLEKEGVEADDVIASVA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A  EGF V I + DKDL+QLV+    +++  KE++I    V+ ++G+ P+++    AL
Sbjct: 119 KKAVAEGFEVCICTADKDLLQLVNSQVSVFNPWKEQEIKYNEVLLQFGVAPDQIADYLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ G G K A   L+E+ ++E+++ N  R+   K ++ I E  ET  LS++
Sbjct: 179 VGDSSDNIPGVVGCGPKKAQAFLKEFQSVEDLVANTQRLS-SKNKQMIEEQIETLLLSKR 237

Query: 246 LVMLRTDVPITIPLEHL 262
           L  L TD+ I +  E +
Sbjct: 238 LATLHTDLMIPLKTEEM 254


>gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6]
          Length = 861

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 244/408 (59%), Gaps = 9/408 (2%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSP 626
           +Y  ++ P+  V++ M   GI +D++ +++   ++   L  +   I+  +G   FN +SP
Sbjct: 460 LYNDIEFPLAQVLADMTRIGILVDKEGIEKFGVKMRSELEDVLTRIHMETGSASFNPNSP 519

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG++LF  +  P G KT+ G W T A+ LE +   D P++++IL++R   K+ STY +
Sbjct: 520 KQLGEMLFDTMGLPHGKKTQRG-WSTDAETLEALR--DYPLVEDILQYRAYQKLNSTYVE 576

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L   I +   R+HT ++     TGRL+S  PNLQNIPI+T+LG ++R  F++ P   L+
Sbjct: 577 GLLKVIAE-DGRIHTRFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVARPGCVLV 635

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            ADYSQIELRILAH+     + Q F    DIHR  AA+I+G+ +E+V+P++R  AK INF
Sbjct: 636 DADYSQIELRILAHVTGDEHMQQAFLTGEDIHRSTAAKIYGLPLEQVTPRLRSSAKAINF 695

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YG   + L+  + +   EA  ++K Y   FP +  Y++KT +  R  GYV T+FGRR
Sbjct: 696 GIMYGKGAYSLSKDIGVSVKEADAFLKNYLATFPKVSGYMDKTISDARSCGYVSTLFGRR 755

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
               E+ S   +IR   ER A N PIQG+AAD+ + AM+ V + L D K+ ++++L +HD
Sbjct: 756 RSLPELASNNHNIRASGERMARNTPIQGTAADVIKLAMVRVWRRLRDEKMESRLILTVHD 815

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+ E PE E   A+ I+   ME  C   +N  VPL   +    NW E
Sbjct: 816 ELIVEAPEAEAAKAAAILQEEME-GC---VNYAVPLSTEVHQGKNWLE 859



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 161/304 (52%), Gaps = 15/304 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S   RAFY   LL+ K DG   NAI GF N+L  LL    KES     AV FD
Sbjct: 3   LLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIFGFLNILLSLL----KESEPDEVAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y  YKA R K+P+ L  QLP++R      G   +  +G+EADDI+ T   
Sbjct: 58  LKAPTFRHKMYDGYKATRHKMPDELAAQLPVIRQLLALLGYREVTAEGWEADDILGTLAA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV------KEEKIDIEHVIKKWGIPPEKMV 180
                     + + D+D +QLVS TT +          K   +D++ V +K+G+ P +++
Sbjct: 118 ACAARSDDCFLATGDRDSLQLVSDTTTVLLATTALGRSKTVTMDVDAVKEKYGVTPRQLI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK----KRRENILEY 236
            +++L GD+ DNIPG+ GIG K+A  L+Q+YG+LE +  +      K    K+RE++ E 
Sbjct: 178 DVKSLMGDTSDNIPGVKGIGEKSAFALIQKYGSLEGVYAHLDDTTDKTIKPKQREHLAED 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A LS  L  +RTD PI        + + N    +  ++ LE   LI R   +    A
Sbjct: 238 RAMAELSYTLGTIRTDAPIDTAEGAYAVGEGNKAEAVRLMQELELHSLIARFGLSDITPA 297

Query: 297 ANIE 300
           A+ E
Sbjct: 298 ADPE 301


>gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 833

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 253/409 (61%), Gaps = 13/409 (3%)

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           ++L VYE ++KP++ ++S+ E  GI +D+ +L +++    + + +L   +Y+L+G +FNL
Sbjct: 437 EVLSVYEEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELAGMEFNL 496

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQL ++LF  LK P+  K      ++TA D+ +    ++ II  ILE+R+  K+ ST
Sbjct: 497 NSPKQLAEVLFDHLKLPTKKK------RSTAVDVLEGLIEEHAIIAPILEYRKYQKLYST 550

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           YA  L  HI+    ++HT ++  +T TGRL+S +PNLQNI ++ +  + IR+AF++    
Sbjct: 551 YAVGLTKHIHA-DGKIHTSFNQHATQTGRLSSSDPNLQNISVRDEETRMIRKAFVASEGC 609

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+S DYSQIELR+L+++A    + + F    DIH   A  IFGV+   V+  MRR AK+
Sbjct: 610 TLMSIDYSQIELRVLSYLADEKRMMEAFNGGHDIHSETAKAIFGVD--DVTSTMRRQAKS 667

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YG+S + L+ QL I   EA  +I RY   +P I +Y++       ++GYV+T+F
Sbjct: 668 VNFGIVYGMSEYGLSKQLDITIPEARHFITRYNEIYPNITKYMDSVVEDCLRDGYVKTLF 727

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  EI     ++++  +RAA+NAPIQG+AADI + AMI   + L  +   + M+LQ
Sbjct: 728 NRRRYIPEIYDANRAVKDFGKRAAMNAPIQGTAADIIKIAMIKADELLTSNNYKSSMILQ 787

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +HDELVF+V ++E+     ++V  ME      ++  + L V++    +W
Sbjct: 788 VHDELVFDVYDDELEQIQDLMVSVMEHI----VSWPIDLNVSVDTGKDW 832



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 182/341 (53%), Gaps = 29/341 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           N L L+DG+S ++RA+Y T  LSR +     G+  NA+ GF  ML K ++        +H
Sbjct: 2   NKLLLIDGNSMLFRAYYGT--LSRGYMKSSSGVVTNAVYGFSTMLAKAIEIIN----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++++ +YK  R ++ E L+ Q  LVR    A+ I   E+ G+EADDI
Sbjct: 56  VLVAFDTKDKTFRHDMFDEYKGTRKEVDEELVSQFALVREFLDAYPIKRFELSGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWG 173
           I T + +     F V I+++D+D++QL+       D +  +K       +D   ++ + G
Sbjct: 116 IGTMSRMYPD--FKVEILTSDRDMLQLIDDNV---DVLLMKKGLTDLRLMDKTSLMDEMG 170

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P+++V ++AL GD+ DNIPG+P IG KTA  LL +Y   EN+ ++   IK  K  E I
Sbjct: 171 IEPKQIVDMKALMGDTSDNIPGVPSIGEKTALKLLGQYTTFENLYVHKEEIK-GKMGEKI 229

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E+ E AR+S KL  + T VP+ I L  +  E  N   L +F +  +   LI      YD
Sbjct: 230 REFEEQARMSYKLAEIHTSVPLDIDLSSIKYEIPN-ESLNAFYRKYDMNSLI---TDNYD 285

Query: 294 CDAANIEPVVL-DINTTENKG-IAIETEIDRDTTIKTSQFS 332
            +    E +   +++++  K  IAI  E+D+   ++    S
Sbjct: 286 VEVVEKETIEFTNLDSSWKKSMIAISMELDKKGNLEGCYLS 326


>gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
 gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
          Length = 829

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 173/491 (35%), Positives = 274/491 (55%), Gaps = 43/491 (8%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           FED+ +++Y L++  +  D+  +   +L  T +E    R +                   
Sbjct: 361 FEDLKVIAYPLNTLNT--DLEYLFSHYLGETSREAFHKRLN------------------- 399

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
                +L+  L   +  EK+L +Y ++DKP+I+ +  ME  GI +D + L  +S +IS  
Sbjct: 400 -----ELYEKLCNAMFTEKVLTLYYKVDKPLINAIKHMEKNGISLDVEQLLSLSTQISGK 454

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L  +E  I+D++G+ F+L SPKQLG +LF +++ P   K K+G   T  + L  ++    
Sbjct: 455 LEEIESKIFDIAGKTFSLQSPKQLGKVLFEEMQIPVQKKLKSGLSSTDNEVLTSLSIQGY 514

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHIN--KRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            I   +L WR   K+K+ Y D L   +N  +   R+ T YS   T+TGRL+S  PNLQNI
Sbjct: 515 EIADYLLSWRHYIKLKTAYIDPLLLKVNPNEEKHRISTTYSATLTLTGRLSSSNPNLQNI 574

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P +    ++IR+ F +      + ADYSQIELRILA+IA +  L     +  D+H + A+
Sbjct: 575 PRE----KEIRKIFTAKEGHHFLCADYSQIELRILAYIANVERLKCALASGTDLHTLTAS 630

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           +IF    +K++P +R  AK +NF I+YGI+ F L+ QL I + EAA YI++YF  +P I 
Sbjct: 631 QIFKT--DKITPDLRNKAKAVNFGIVYGITNFGLSKQLAISKEEAASYIQKYFDEYPEIK 688

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y+   +N  R++ YV+T+  R+     INS   +I  + ER+AINAPIQG+AADI R A
Sbjct: 689 IYMNHIRNQARKDTYVKTMMNRKCPIQNINSNNRTISLVAERSAINAPIQGTAADIIRTA 748

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+   +  ++ +L + M++Q+HDELVFE+  + I   ++ I   ME++        +PL 
Sbjct: 749 MV---RMAQEKELLSHMVMQVHDELVFELETDVIQQLAKKIKRIMEESH------GIPLL 799

Query: 964 VNIKVSNNWQE 974
           V +K   N  E
Sbjct: 800 VELKHGPNLGE 810



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/285 (37%), Positives = 165/285 (57%), Gaps = 9/285 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D  +F++ A++A P L+  H+ LPV A+ GF N+L K L+         +  V  D
Sbjct: 5   LMIIDAYNFLFSAYFALPNLT--HNELPVGAVYGFLNILLKHLRTK-----PEYLVVALD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +   TFR  IY +YKANRP +P  L PQ  L+R       +  +EI+GFEADD+IAT   
Sbjct: 58  HGKSTFRETIYNNYKANRPPVPGNLTPQFALLRECVDVLNLNPLEIEGFEADDVIATLVR 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              K    + I+STDKDLMQLV+    + + +K   I +  V +K+G+ P +M    +L 
Sbjct: 118 KFSKSDLKIKILSTDKDLMQLVNENVHVINPIKNRIIGVNEVKEKFGVFPTQMTDFLSLV 177

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+PGIG KTAA LL  +G +EN  +N   I   + +E++L + +   LS++L
Sbjct: 178 GDTSDNIPGVPGIGVKTAAKLLNTFGAIENFRLN--EISPARIKESLLRHHDQLTLSKRL 235

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           V L  D+ I   L+ +  +  +G +L++FL+   F  LI ++  +
Sbjct: 236 VSLVDDINIQCSLDCIRYQQQDGTKLLAFLEKYGFKNLIPKLVKS 280


>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
          Length = 886

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 162/496 (32%), Positives = 272/496 (54%), Gaps = 19/496 (3%)

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           H   +  R   D+ ++ +++DS   +H +  +A++WL     +       + P+      
Sbjct: 403 HAVPLEPRALVDLEVLGWLVDSADVAHGLDQLARRWLGRHLDDRGPLEAEAAPLGARQWV 462

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +V  H I  +         L  +L  + L  +   ++ P+  V++ MEI G+ ID+D+L 
Sbjct: 463 EVV-HPIREA---------LERRLTEDDLWRLATDVEIPLTRVLTDMEIHGVAIDRDVLA 512

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +  E++         +   +G + N +SP+QL  +LF +L  P+G KTKTG + T A+ 
Sbjct: 513 AIGTELATERDRALAEVRHYAGGELNPNSPRQLAVVLFERLGLPAGRKTKTG-YSTDARV 571

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI+  IL +R+L K+ ST+ + L + I     R+H  ++ A   TGR++S 
Sbjct: 572 LESLRDA-HPIVAAILRFRELDKLLSTFYEGLRSEIGA-DGRIHATFNQAVARTGRISSE 629

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIP++TD G++ R AF++     L++ADYSQIELR+LAH++    L ++     D
Sbjct: 630 RPNLQNIPVRTDEGKRFRDAFVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGD 689

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H +VAA +FGV  E+V+PQ R  AK + + + YG+  + LA +L +P +EA   +  +F
Sbjct: 690 VHTLVAARVFGVPAERVTPQQRSVAKMVTYGLSYGMEAYGLAQRLGVPPAEAEGILADFF 749

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FPG+  Y + + +  R  G+  T+ GRR +  +++SP  ++R   ER A+NA  QG A
Sbjct: 750 AAFPGLRHYRDASVDAARAQGFTTTLLGRRRYLPDLDSPNRTVRQGAERQAMNAGTQGLA 809

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + A++ +H +L     A  ++LQ+HDE+V E   E       ++   +E A     
Sbjct: 810 ADIFKIALVRLHAALSPTDGA--LVLQVHDEVVVEAVAERAHDVRALVEDVLEHA----F 863

Query: 957 NLRVPLKVNIKVSNNW 972
            LRVPL+V   V  +W
Sbjct: 864 ALRVPLRVQSGVGRSW 879



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/245 (39%), Positives = 135/245 (55%), Gaps = 15/245 (6%)

Query: 17  YRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN 74
           +RAFYA   P++ R   G+  NA+ GF +ML  ++  +R     +H AV  D    TFR+
Sbjct: 25  FRAFYALREPMM-RTESGVATNALFGFASMLANVVAQTRP----THLAVALDAEGPTFRD 79

Query: 75  EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
            I   YK  R   P+ L  QL   R   +A G+PA+E  GFEADD+IAT    A   G A
Sbjct: 80  AILESYKGTRAPTPDDLRQQLDAARGLLEAIGVPAVEASGFEADDVIATLATRARDAGIA 139

Query: 135 VTIISTDKDLMQLV-SPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
             I++ D+DL+QLV  P   +  T K     E  D   V++ +G+PP +   L +L GDS
Sbjct: 140 TRIVTGDRDLLQLVEDPLIVVLLTRKGVSNLEAFDEAKVLETYGVPPARYGDLASLRGDS 199

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL-SRKLVM 248
            DN+PG+PGIG KTAA LL  + ++E IL +   +  ++R    LE A +  L +R L  
Sbjct: 200 SDNLPGVPGIGPKTAAALLDRFESIEGILAHLDALSARQR--EALEQARSQLLEARLLTQ 257

Query: 249 LRTDV 253
           LR DV
Sbjct: 258 LRRDV 262


>gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5]
 gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5]
          Length = 909

 Score =  291 bits (744), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 292/531 (54%), Gaps = 24/531 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L  +  +    K+ H+ K   L    +G  ++G   D  + +Y+    + S+D+  +A +
Sbjct: 387 LAGWLADAERPKVLHDSKPAVLAFAAHGWELQGIARDTQIAAYLARPDQRSYDLTDLALR 446

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--------E 563
           +L +    +       + +D + D  V E      N++LQ    L     +        E
Sbjct: 447 YL-HRELRVDAPETGQLTLDGLGDEGVAEQ-----NLMLQARATLDLADAIDAELSRDGE 500

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           +   +   ++ P++ V++ ME TGI  D D L ++ A  +  + +  +  Y++ G +FNL
Sbjct: 501 QSARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVGREFNL 560

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKS 682
            SPKQL +ILFT+L  P   + KTG + T A  L+ +    ++P++ ++L  R ++K+KS
Sbjct: 561 GSPKQLQEILFTELGLPKTKRIKTG-YTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKS 619

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741
           T  D L   ++    R+HT ++     TGRL+S EPNLQNIPI+T+ G++IRRAF+    
Sbjct: 620 T-VDGLLKSVSD-DGRIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEG 677

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            + L++ADYSQIE+RI+AH++    L + F +  D H   A+ +F V +  V+   RR  
Sbjct: 678 YECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAATASSVFTVEVGDVTADQRRKI 737

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +N+ + YG+S F L+ QL I   EA   ++ YF  F G+ +Y+++     RQ+GY  T
Sbjct: 738 KAMNYGLAYGLSAFGLSQQLGISAEEARGLMENYFAGFGGVRDYLQEVVARARQDGYTST 797

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           I GRR +  ++ S     R + ER A+NAPIQGSAADI + AM+ V  +L D  L ++ML
Sbjct: 798 ILGRRRYLPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRML 857

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDELVFEV   E  T   ++   M +A      L VPL+V++   ++W
Sbjct: 858 LQVHDELVFEVAPGERETLEALVRKQMGEA----YPLSVPLEVSVGEGHDW 904



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H  V F
Sbjct: 18  LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THIVVAF 73

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR + Y +YKA R + P     Q+ LV+    A  +P +E +G+EADD+IAT  
Sbjct: 74  DVSRRSFRTDRYAEYKAGRSETPTDFKGQVSLVKEVLAALRVPVVEKEGYEADDVIATLA 133

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  +G  V I + D+D  QLV    T LY         ++D   V  K+G+ P++   
Sbjct: 134 CQARDQGMDVLITTGDRDAFQLVGERVTVLYPRKGVSDLARMDPAAVEAKYGVTPDRYRD 193

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           L AL G++ DN+PG+PG+G KTAA  +  YG +E ++  A  IK K
Sbjct: 194 LAALVGETSDNLPGVPGVGPKTAAKWINLYGGVEGVVARADEIKGK 239


>gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG']
          Length = 872

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 162/426 (38%), Positives = 250/426 (58%), Gaps = 14/426 (3%)

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
           N++ +LW       + E LL + + ++ P+  ++ QME+ G++ID+  L+     I    
Sbjct: 455 NILSRLW----DDAVKEGLLELVQSIEIPLGRILYQMEVLGVRIDRQALESARESIEALS 510

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             LEE IY L+G +F + SPKQ+G+IL+ KL  P+  K KTG + T  + L +++   +P
Sbjct: 511 RELEEEIYRLAGSRFTILSPKQVGEILYGKLGLPTARKGKTG-YSTDEETLTRLSA-LHP 568

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           + + IL +RQ+ K+ STY D +   I+ +  R+H  ++   T TGRL+S  PNLQNIP++
Sbjct: 569 LPEKILAYRQMKKLLSTYVDPIARGIDAQG-RLHGQFNQTVTATGRLSSSNPNLQNIPMR 627

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           +  G++IR+ FI+   + L+SADYSQIELR+LAH ++   L  VFE + DIH   A  +F
Sbjct: 628 SPAGREIRKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERNEDIHARTARLLF 687

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G   + V+P+ RR AKTINF I+YG+S F L+  L +   EA  +I RYF  FP +    
Sbjct: 688 G---DPVTPETRRKAKTINFGILYGMSAFSLSQDLGVESQEAQAFIDRYFGAFPKVGPLF 744

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           +      ++ G V TI GR+    E+ +     R   ER A+N  +QGSAAD+ +++M+ 
Sbjct: 745 DSILEEAKKTGEVRTILGRKRRIPELFASDRRSREYGERMAVNTVLQGSAADLIKKSMVD 804

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
             +  +D      +L+Q+HDEL+FEV E+ +  AS  I   ME A    + L+VPL V +
Sbjct: 805 FGQVRKDRPEIGDLLVQVHDELLFEVREDNLDEASGTIRSLMEGA----LRLKVPLVVQV 860

Query: 967 KVSNNW 972
               NW
Sbjct: 861 GQGKNW 866



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 171/321 (53%), Gaps = 13/321 (4%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG  +I+RA+++    ++R   GLP  AI  F NML  +L    KE   S  AV+F
Sbjct: 26  LVLMDGFGYIFRAYHSRVTFVTRA--GLPTGAITVFGNMLLSVL----KELSPSAMAVVF 79

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           +      R EI P+ KANRP+ P   L Q+P +    +  G+P +   G+EADD IA   
Sbjct: 80  ESRTGNVRTEILPEIKANRPEPPSDFLQQIPYIERLIRGIGVPLLSTDGYEADDTIAALA 139

Query: 126 ------YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
                 +   K    V I+S+DKDL+ LVS    +YD + ++ +    V +KWG+ P ++
Sbjct: 140 AKWLKQHDRTKVPCHVVILSSDKDLLTLVSERVWVYDPMTKKVLGPSDVREKWGVEPWQI 199

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L ALTGD+ DNIPG+PGIG KTAA LL   G ++ +  +   +  ++ R  + E+ E 
Sbjct: 200 PDLLALTGDTADNIPGVPGIGQKTAAKLLGNQGTIDTLYEDLDNVVPERIRALLREHRER 259

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              ++K+ +L  D+ +++  E L L   +   L S L+ LE   L++RV  T +    ++
Sbjct: 260 VFRNKKVTVLHADLTLSLEPESLSLSPPDMDSLKSLLQELEAPGLLSRVQRTLELRKPSL 319

Query: 300 EPVVLDINTTENKGIAIETEI 320
            P      TT  + +  ++++
Sbjct: 320 APEEKKRRTTSERRLPFQSDL 340


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 197/607 (32%), Positives = 325/607 (53%), Gaps = 33/607 (5%)

Query: 372 VNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           V+TK+   + +  LE +   +F   T ++D+ ++K +  +    D+K  +SF V    + 
Sbjct: 296 VSTKEQADKILNDLENVKEIAFDTETTSVDSHNAKIVGFSF-CWDEK--SSFYVP---LA 349

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG-FED 488
            S   + D   KN   + I +   KF        IG N+KYD ++V + +G++    + D
Sbjct: 350 HSYLGAPDMLDKNIAKRLIEAIYTKFI-------IGQNLKYDFRIVRNNFGLNPPAKYAD 402

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            M++++++D   S   + ++A+++  Y   +     K       +       +A E++ +
Sbjct: 403 TMILAWLMDPDNSVG-MDNLAKRYFDYDTIKFENVVKKGENFSSVDVKNAANYASEDAWI 461

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
            L+ +      L  E LL + + L+ P I V+  ME  GI++D   LK++  EI++ L  
Sbjct: 462 TLKFYKKFCGILSTE-LLDLAKNLEFPFIKVLLNMEENGIKMDISSLKEMINEIAEQLKI 520

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           L   IYDLSGE FN++S KQLG++LF  L  P+  KTKTG + T    L  I+   + ++
Sbjct: 521 LTNEIYDLSGENFNINSTKQLGEVLFEHLGLPAKKKTKTG-YSTNESALSAIS-ELHAVV 578

Query: 669 KNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
             IL +R+L K++STY +  L   +     R+ + +    T TGRL+S  PNLQNIP   
Sbjct: 579 PKILAYRELYKLQSTYTEPLLALALKNDENRIFSNFLQTGTSTGRLSSKNPNLQNIPAHG 638

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            +  ++R  F+S      +  DYSQIELR+LAH +    L + F    DIH   A  IFG
Sbjct: 639 SMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFREDEDIHSRTAISIFG 698

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +      + R  AKTINF +IYG+   +L+ +L I RS+A DYI++YF  F  I  ++E
Sbjct: 699 TS----DKEKRAVAKTINFGLIYGMGASKLSNELGISRSDAKDYIEKYFKAFASIKNFME 754

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             K+  ++NGY  T+FGR+ ++D  N+       + ER ++N   QGSAADI ++AM+ +
Sbjct: 755 NLKSEAKKNGYTTTLFGRKRYFDFANATPMQFA-MYERESVNTKFQGSAADIIKKAMVEI 813

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
              L ++   T++LLQIHDEL+FEV ++     S+     M++     + L VPLK ++ 
Sbjct: 814 SPFLNEN---TRLLLQIHDELIFEVRDD----MSESFGKKMQEIMQNVVKLNVPLKTSLS 866

Query: 968 VSNNWQE 974
           ++  W +
Sbjct: 867 INKRWGD 873



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 167/325 (51%), Gaps = 28/325 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R FYA   L  K DG P   I+GF N     + N + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLFYALSSLKNK-DGKPSGMISGFAN----FIANLKNEFNSDYIVFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++I P+YKANRP+ P+ LL QLP+     +  G+ +   +G+EADDIIA++  
Sbjct: 59  SKGKTFRSDIDPNYKANRPEPPKALLDQLPVCIEMIEKMGLCSFCQEGYEADDIIASFVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              K    + I++ DKDL QL+     +Y   K+   D +   +K+G+ PE++     + 
Sbjct: 119 KYSK-NMQINIVTHDKDLYQLIGENVRVYSPAKKMLYDRDGCFEKYGVWPEQVRDFLGIC 177

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPGI GIG K A  LL+ +G+LE I  N   + Q ++++ ++E  E A +S+KL
Sbjct: 178 GDSADNIPGIKGIGEKGAKKLLENFGSLEKIYENIDNLPQNRQKDLLIEGKENAFMSKKL 237

Query: 247 V----------MLRTDVPITIPLEHL--ILEDCNGPRLISFLKALEFT-KLINRVATTYD 293
                      +L  + P   PL  +  IL++ N  R++S L+  + T K +N  A T  
Sbjct: 238 ASLYDGLEVPDLLGAEFPTENPLLKITEILKEYNLNRILSALENSKDTDKTLNFKAITVS 297

Query: 294 C---------DAANIEPVVLDINTT 309
                     D  N++ +  D  TT
Sbjct: 298 TKEQADKILNDLENVKEIAFDTETT 322


>gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2]
          Length = 892

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 171/512 (33%), Positives = 284/512 (55%), Gaps = 13/512 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K     L   G  + G   D  L SY+L   R +H      +  L+    E  +
Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +   ++ +D   D   +  ++E +  + +L  ++  ++       +   ++  +   +  
Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR   +     + L+SADYSQIE+RI+AH
Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGVVVGEGYESLLSADYSQIEMRIMAH 679

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 304 EVDDTLEISGT 314


>gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 882

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 168/519 (32%), Positives = 294/519 (56%), Gaps = 16/519 (3%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K GH++K     +   G  + G   D  L +Y++  G+ + ++  +A ++L    +    
Sbjct: 369 KTGHDLKTPLHAIRARGWVLSGLAMDTALAAYLVRPGQRTFELDDLALRYLHRELRSETD 428

Query: 523 SRKSSIPI-----DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                + +     + +   ++Q+  ++ +  I +L   L  +L       +   L+ P++
Sbjct: 429 GGDGQLSLLDGGAEGLEQKEIQDELVK-ARAIFELAGALEKELEQIGGAKLLAELELPLL 487

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           +V++++EI G+ +D + L  + A     +    E  Y + G++ NL SPKQL  +LF +L
Sbjct: 488 EVITELEIAGVAVDLEQLTTLEAHYLSRVTQAAEEAYAVIGKQINLGSPKQLQVVLFDEL 547

Query: 638 KFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
             P   +TKTG + T A+ L+ +    ++P ++++LE R  +K+++T    + +  +   
Sbjct: 548 GMPKTKRTKTG-YTTDAEALQGLFEKTEHPFLQHMLEHRDATKLRTTVEGLIKSVADD-- 604

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIEL 755
            R+HT        TGRL+S EPNLQNIP++T+ G++IR AF+      +L++ADYSQIE+
Sbjct: 605 GRIHTTLLQTIAATGRLSSTEPNLQNIPVRTEEGRRIRDAFVVGEGFTELMTADYSQIEM 664

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI+AH+++   L + F +  D+H  VA+  F +  E+++P++R   K +++ + YG+S +
Sbjct: 665 RIMAHLSQDEGLIEAFNSGEDLHTFVASRAFSMPPEEITPELRYRVKAMSYGLAYGLSAY 724

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+ QLRI   +A   ++ YF RF G+ +Y+        +NGY ET+FGRR +  ++NS 
Sbjct: 725 GLSQQLRISTEDAKSQMEAYFDRFGGVRDYLHSVVGVAAKNGYTETVFGRRRYLPDLNSD 784

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
               R + ER A+NAPIQGSAADI + AM++VH++L + KL +++LLQ+HDELV EV E 
Sbjct: 785 NRQRREMAERMALNAPIQGSAADIIKVAMLNVHRALVEAKLKSRILLQVHDELVLEVAEG 844

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E     Q++   M  A      L VPL+V++    +W E
Sbjct: 845 EKEQLEQLVREGMGSAY----ALAVPLEVSVGYGRSWNE 879



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 151/280 (53%), Gaps = 10/280 (3%)

Query: 17  YRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           YRAF+A P  + K   G   NA+ GF +ML  LL    ++   +H AV FD    TFR+E
Sbjct: 3   YRAFFALPAENFKTKTGQVTNAVFGFTSMLINLL----RDEAPTHLAVAFDLSRKTFRSE 58

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
            + DYKANR   P+    Q+ LV+      GIP++  + FEADDIIAT T  A  +GF V
Sbjct: 59  TFADYKANRSTTPDEFRGQVDLVKEVLDVLGIPSLVKENFEADDIIATLTTQATADGFDV 118

Query: 136 TIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
            I + D+D +QLV+   T LY      +  +   + V +K+G+ P +     AL GD  D
Sbjct: 119 LICTGDRDALQLVTEHVTVLYPKRGVSEMTRFTPDAVEEKYGLTPRQYPDFAALRGDPSD 178

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
           N+P IPG+G KTAA  ++++G+L++++     +K K   + +  +  + +L+R+L  L  
Sbjct: 179 NLPSIPGVGEKTAAKWIKQFGSLDDLIDRVDEVKGKV-GDALRAHLSSVQLNRQLTELIR 237

Query: 252 DVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           DV + I    L L   +   + +    LEF  L +R+  T
Sbjct: 238 DVELEIAPSGLELRPWDREAVHALFDELEFRVLRDRLFAT 277


>gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
 gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
          Length = 899

 Score =  290 bits (742), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 291/531 (54%), Gaps = 24/531 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L  +  +    K+ H+ K   L    +G  + G   D  + +Y+    + S+D+  +A +
Sbjct: 377 LAGWLADAERPKVLHDSKPAVLAFAAHGWELHGIARDTQIAAYLARPDQRSYDLTDLALR 436

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--------E 563
           +L +    +       + +D + D  V E      N++LQ    L     +        E
Sbjct: 437 YL-HRELRVDAPETGQLTLDGLGDEGVAEQ-----NLMLQARATLDLADAIDAELSRDGE 490

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           +   +   ++ P++ V++ ME TGI  D D L ++ A  +  + +  +  Y++ G +FNL
Sbjct: 491 QSARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVGREFNL 550

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKS 682
            SPKQL +ILFT+L  P   + KTG + T A  L+ +    ++P++ ++L  R ++K+KS
Sbjct: 551 GSPKQLQEILFTELGLPKTKRIKTG-YTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKS 609

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741
           T  D L   ++    R+HT ++     TGRL+S EPNLQNIPI+T+ G++IRRAF+    
Sbjct: 610 T-VDGLLKSVSD-DGRIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEG 667

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            + L++ADYSQIE+RI+AH++    L + F +  D H   A+ +F V +  V+   RR  
Sbjct: 668 YECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAATASSVFTVEVGDVTADQRRKI 727

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +N+ + YG+S F L+ QL I   EA   ++ YF  F G+ +Y+++     RQ+GY  T
Sbjct: 728 KAMNYGLAYGLSAFGLSQQLGISAEEARGLMENYFAGFGGVRDYLQEVVARARQDGYTST 787

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           I GRR +  ++ S     R + ER A+NAPIQGSAADI + AM+ V  +L D  L ++ML
Sbjct: 788 ILGRRRYLPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRML 847

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDELVFEV   E  T   ++   M +A      L VPL+V++   ++W
Sbjct: 848 LQVHDELVFEVAPGERETLEALVRKQMGEA----YPLSVPLEVSVGEGHDW 894



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H  V F
Sbjct: 8   LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THIVVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR + Y +YKA R + P     Q+ LV+    A  +P +E +G+EADD+IAT  
Sbjct: 64  DVSRRSFRTDRYAEYKAGRSETPTDFKGQVSLVKEVLAALRVPVVEKEGYEADDVIATLA 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  +G  V I + D+D  QLV    T LY         ++D   V  K+G+ P++   
Sbjct: 124 CQARDQGMDVLITTGDRDAFQLVGERVTVLYPRKGVSDLARMDPAAVEAKYGVTPDRYRD 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           L AL G++ DN+PG+PG+G KTAA  +  YG +E ++  A  IK K
Sbjct: 184 LAALVGETSDNLPGVPGVGPKTAAKWINLYGGVEGVVARADEIKGK 229


>gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R]
 gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 880

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 192/603 (31%), Positives = 313/603 (51%), Gaps = 36/603 (5%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +T+ + QW+      G A    +T           A+AI+      DT  K   + +DL+
Sbjct: 306 DTQSLAQWLPA--RAGQALALALTGVAKPAGGDAYALAIA------DT--KHHAVLVDLA 355

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIML 491
             +++D        K + ++L    EN   L   H  K    +L   G  + G   D  +
Sbjct: 356 DISAEDE-------KALATWLAS--ENPKML---HGAKAAYHMLAGRGFELHGVVHDTAI 403

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +Y+L  G+ ++++A + Q+ L   R+         + +   +D Q     +++   IL+
Sbjct: 404 AAYLLRPGQRTYELADVYQRHLQ--RQLSTNDNGGQLALLDAADDQ---SLVDDVIAILE 458

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID-QDLLKQVSAEISKNLLSLE 610
           L   L  +L   +   +Y  L+ P+  ++++ME  GI +D   L +Q+   I +     E
Sbjct: 459 LSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIGQVAQEEE 518

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
                      NLSSPKQL  +LF     P   KTKTG     A+         +P + +
Sbjct: 519 AARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKNPHPFLDH 578

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           +L  RQ  K+K+T  + L   +     R+HT ++     TGRL+S +PNLQNIP++T+ G
Sbjct: 579 LLAHRQYQKMKTTL-EGLIREVAP-DGRIHTTFNQTVASTGRLSSTDPNLQNIPVRTEAG 636

Query: 731 QKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           +KIR  F+     + L++ADYSQIE+R++AH+++   L + +    D+H  V +++F V 
Sbjct: 637 RKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVP 696

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           I+ V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++ YF RF G+  Y+ + 
Sbjct: 697 IDGVTPELRRQVKAMSYGLVYGLSAFGLSQQLSIPAGEAKQIMESYFERFGGVQRYLREI 756

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
               R+ GY ET+FGRR +  E+ S     R   ERAA+NAPIQG+AADI + AMI V +
Sbjct: 757 VEEARKAGYTETLFGRRRYLPELTSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDR 816

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
           SL++  + +++LLQ+HDELV EV   E+    +I+   M+ A    I L VPL+V+    
Sbjct: 817 SLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNA----IKLSVPLEVSAGDG 872

Query: 970 NNW 972
            NW
Sbjct: 873 VNW 875



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 149/287 (51%), Gaps = 11/287 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  +RAF+A P  +     G   NA+ GF +ML  LL++ +     +H AV FD
Sbjct: 1   MLIDGHSMAFRAFFALPAENFSTSGGQATNAVYGFLSMLSTLLKDEQP----THVAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR +++P YKA R   P     Q+ +++      GI  IE   FEADD+IAT + 
Sbjct: 57  VGRKTFRTDMFPAYKAQRDATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDVIATLSV 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            A+  GF   I++ D+D  QLV+ TT +   +K      +   E V +K+G+ P +    
Sbjct: 117 AAKPLGFKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTPRQYPEF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+P IPG+G KTA   + +Y  L+N+L +A  IK  K   ++ E  E  R+
Sbjct: 177 AALRGDPSDNLPNIPGVGEKTATKWIAQYETLDNLLDHADEIK-GKVGASLRERIEQVRM 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288
           +RKL  +  D+ + +  +   ++      + +    LEF T L  RV
Sbjct: 236 NRKLTEMVKDLELPLGPDDFDMKPVQVAEVAAKFDDLEFGTNLRERV 282


>gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 908

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/514 (33%), Positives = 280/514 (54%), Gaps = 14/514 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K    V   +G S+ G   D  L +Y++  GR S D+ +++   L Y  +E+  
Sbjct: 401 KVFHDAKSAMRVFAEHGWSIEGVTMDTALAAYLVKPGRRSFDLDALS---LEYLHRELAP 457

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +  +   +   +D   +  A+   +  IL L      +L       +   ++ P   +++
Sbjct: 458 AAVADGQLAFGADEGAEAEALMVQARAILDLGEAFGSRLEEVGAADLLRDMELPTSALLA 517

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI  D+  L+ +    +  +    +  +  +G +FNL SPKQL ++LF +L  P 
Sbjct: 518 RMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPK 577

Query: 642 GAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             +TKTG + T A  L  +    DN +   +L  R+ +K++ T  + L   I     R+H
Sbjct: 578 TKRTKTG-YTTDADALAWLATQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIH 634

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++A
Sbjct: 635 TTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQIELRVMA 694

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + F +  D+H   AA++F V    V  +MRR  K +++ + YG+S F L+ 
Sbjct: 695 HLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ 754

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I  +EA   +  YF R+ G+ +Y+ +  +  R  GY  T+FGRR +  +++S     
Sbjct: 755 QLNIEAAEARALMDAYFERYGGVRDYLRRVVDEARATGYTATLFGRRRYLPDLSSDNRQR 814

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER A+NAPIQG+AADI + AM+ V  +L +  LA++MLLQ+HDE+V EV   E   
Sbjct: 815 REAAERMALNAPIQGTAADIVKIAMLKVDGALRETDLASRMLLQVHDEIVLEVAPGERPA 874

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +++   M  A    + LRVPL V++ V  NW+
Sbjct: 875 VEELVRREMADA----VRLRVPLGVSVGVGPNWE 904



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 147/255 (57%), Gaps = 10/255 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P+ +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 20  LMLMDGHSLAYRAFFALPVENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 75

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E + +YKANR K P+    Q+ L+     A   P   ++G+EADD+IAT  
Sbjct: 76  DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAPRFAVEGYEADDVIATLA 135

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EGF V I++ D+D  QLVS  TT LY T  V E  +   E V++K+G+ P +   
Sbjct: 136 TQAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVVEKYGLTPAQYPD 195

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++     +K K   +N+ ++ E  +
Sbjct: 196 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKGKA-GQNLRDHLEAVK 254

Query: 242 LSRKLVMLRTDVPIT 256
           L+R+L  L   V ++
Sbjct: 255 LNRRLTELERRVELS 269


>gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029]
 gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138]
 gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029]
 gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138]
          Length = 870

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 191/530 (36%), Positives = 295/530 (55%), Gaps = 14/530 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           +IL  LK FF  E     G+N+K D   L   GI +R    D+ L  ++ + G      +
Sbjct: 351 KILPILKDFFLREDLTFYGYNLKRDCHALLNAGIVIREISYDLALAEHLTNGGGKISFQS 410

Query: 507 SIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            +     + T     K    S +PI ++ + Q +++  E    +  +   +  ++  + L
Sbjct: 411 LLVNHGFTETAHRFAKEWGNSGLPIGRLPE-QPEQYFGEFVAYLPIIKDAILEEINRKNL 469

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
            H+   ++ P+  V+  ME  G+ +D + L  + A     L  L E IYDLSG  FN+ S
Sbjct: 470 NHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEIYDLSGRPFNIKS 529

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQL DIL+ +L      K K+    T A+ LE +   ++PII+ +L +R + K+ STY 
Sbjct: 530 PKQLSDILYNELGLRPIDKAKS----TRAEVLEALRS-EHPIIEKLLAFRTIEKLLSTYV 584

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKK 744
            +LP  ++  TQR+H  +     +TGRLA  +PNLQNIPI+++ G  +R+AF +S     
Sbjct: 585 KALPKQVDSHTQRIHPSFDQTGAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSY 644

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            +SADYSQIELR LAH+++   L   FE+  DIH   A+++F V +E+VS + R  AKT+
Sbjct: 645 FLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTV 704

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YG   F LA  L+I   EA + I+ YF R+P I  ++E+T     ++  V T+ G
Sbjct: 705 NFGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLG 764

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           R    D  N    S R  + R A+N  IQGSAA++ + AM+ + ++++  ++ ++MLLQI
Sbjct: 765 RERIIDSWNEFPGS-RAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSRMLLQI 823

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+FEVPEEEI    +++   ME A    + L VP+ VNI +  NW E
Sbjct: 824 HDELLFEVPEEEIEEMQRLVREKMESA----MTLSVPIVVNILIGKNWAE 869



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 152/258 (58%), Gaps = 8/258 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LF++D S FI+RA++A P + + H G    A+ GF   L KL++    E + S    +FD
Sbjct: 4   LFVLDASGFIFRAYFALPEM-KNHQGQATQAVFGFIRSLNKLIKEFSPEYMIS----VFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R  IY DYK+NR K  E + PQ+ LV+      G+  +E +  EADD+IA+  
Sbjct: 59  GPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIASIA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184
             A +E + V + + DKDL+QLV+     ++   ++ +  I  VI+++GIPP  +    A
Sbjct: 119 KKAREENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISEVIERYGIPPGNIPDYLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PG G K AA LL+++G++E +L N   +K   +   + E  ET +LS+
Sbjct: 179 LVGDSSDNIPGLPGCGPKKAAALLKQFGSVEGLLENLDAVKGLSQT-MLSERQETLKLSK 237

Query: 245 KLVMLRTDVPITIPLEHL 262
           +L +L +++PI +P+E L
Sbjct: 238 RLALLDSNIPIPVPIESL 255


>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
 gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
          Length = 829

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 164/408 (40%), Positives = 243/408 (59%), Gaps = 10/408 (2%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +Y  ++ P+  V+ +ME  G+   +  L ++  E+ + +  +E  I++L+GEKFNL+
Sbjct: 431 LYRLYAEVEHPLSYVLYKMEKRGVPFSEKALMELERELEEKISEVETKIFELAGEKFNLN 490

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQL  +LF KL      KT++G + T  + L  +    + I  +IL++R+LSK+ S++
Sbjct: 491 SPKQLSKVLFEKLGLKPVKKTRSG-YSTDVETLTTLALEGHEIAVHILDYRKLSKLLSSF 549

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
             +L   I++ T RVH  +    T TGRL+S EPNLQN+P+   L  ++RRA  +P    
Sbjct: 550 VKALLKRIDE-TGRVHGNFIQTGTATGRLSSAEPNLQNLPVSDPLSLRVRRAVRAPEGYT 608

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+ ADYSQ+ELRILAH+++   L + F    DIH   A  +F  +  +++ + RR AKT+
Sbjct: 609 LVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHTETAKHLF--HTRQITDRERRVAKTV 666

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYG+SP  LA +L IP  EA DYI+RYF +FP + E+IE+T     + G+VET FG
Sbjct: 667 NFGIIYGMSPHGLAERLSIPLQEAKDYIERYFQKFPKVREFIEETVREAYKKGFVETAFG 726

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR    E+       R+  ERAA+N  IQG+AADI + AM+++    E  KL + ++LQ+
Sbjct: 727 RRRPLPELKEKSFHKRSFGERAAVNTVIQGTAADIMKMAMVNLQP--EAEKLNSYIILQV 784

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           HDELV E PE      +  +   ME A     NL VPL V +K    W
Sbjct: 785 HDELVLEAPEGAEEEVAAKVKQVMEGAA----NLSVPLTVEVKSGKEW 828



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 168/292 (57%), Gaps = 10/292 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + +FL DG+   Y+A++A   LS   DG P NA+ GF  +  K+L    +E    + AV 
Sbjct: 2   DRVFLFDGTGLAYKAYHAIKGLSTT-DGFPTNAVYGFARLFLKML----RELKPRYCAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+EI  DYKANR   P+    QLP ++   +  G+  +E+ G+EADDII T 
Sbjct: 57  FDAGRKTFRSEISKDYKANRKPTPDDFKVQLPYIKEFLKCLGVKVLELPGYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEK---IDIEHVIKKWGIPPEKMV 180
               +++GF V I+++DKD+ QL+SP  + L     +EK   ID     ++ GI PE + 
Sbjct: 117 VKRLQEKGFEVVIVTSDKDMKQLLSPRVSILVPPKGKEKAKWIDYSSFKEETGIEPETVP 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L+GD  DNIPG+PGIG KTA  LL+E+ NLE I  N  R+  K +RE + ++ E+A
Sbjct: 177 DLFGLSGDRTDNIPGVPGIGEKTALKLLREFKNLEGIYENLDRL-PKGQREKLEKHRESA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             SR+L  + T+ P+ + LE L+L++ NG  L   ++ L+   L   +   +
Sbjct: 236 FKSRELARIETNAPVDVALEELLLKEPNGECLGKLIEKLQMRSLYGEIEKLF 287


>gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183]
 gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183]
          Length = 870

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 191/530 (36%), Positives = 295/530 (55%), Gaps = 14/530 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           +IL  LK FF  E     G+N+K D   L   GI +R    D+ L  ++ + G      +
Sbjct: 351 KILPILKDFFLREDLTFYGYNLKRDCHALLNAGIVIREISYDLALAEHLTNGGGKISFQS 410

Query: 507 SIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            +     + T     K    S +PI ++ + Q +++  E    +  +   +  ++  + L
Sbjct: 411 LLVNHGFTETAHRFAKEWGNSGLPIGRLPE-QPEQYFGEFVAYLPIIKDAILEEINRKNL 469

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
            H+   ++ P+  V+  ME  G+ +D + L  + A     L  L E IYDLSG  FN+ S
Sbjct: 470 NHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEIYDLSGGPFNIKS 529

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQL DIL+ +L      K K+    T A+ LE +   ++PII+ +L +R + K+ STY 
Sbjct: 530 PKQLSDILYNELGLRPIDKAKS----TRAEVLEALRS-EHPIIEKLLAFRTIEKLLSTYV 584

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKK 744
            +LP  ++  TQR+H  +     +TGRLA  +PNLQNIPI+++ G  +R+AF +S     
Sbjct: 585 KALPKQVDSHTQRIHPSFDQTGAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSY 644

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            +SADYSQIELR LAH+++   L   FE+  DIH   A+++F V +E+VS + R  AKT+
Sbjct: 645 FLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTV 704

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YG   F LA  L+I   EA + I+ YF R+P I  ++E+T     ++  V T+ G
Sbjct: 705 NFGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLG 764

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           R    D  N    S R  + R A+N  IQGSAA++ + AM+ + ++++  ++ ++MLLQI
Sbjct: 765 RERIIDSWNEFPGS-RAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSRMLLQI 823

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+FEVPEEEI    +++   ME A    + L VP+ VNI +  NW E
Sbjct: 824 HDELLFEVPEEEIEEMQRLVREKMESA----MTLSVPIVVNILIGKNWAE 869



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 152/258 (58%), Gaps = 8/258 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LF++D S FI+RA++A P + + H G    A+ GF   L KL++    E + S    +FD
Sbjct: 4   LFVLDASGFIFRAYFALPEM-KNHQGQATQAVFGFIRSLNKLIKEFSPEYMIS----VFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R  IY DYK+NR K  E + PQ+ LV+      G+  +E +  EADD+IA+  
Sbjct: 59  GPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIASIA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184
             A +E + V + + DKDL+QLV+     ++   ++ +  I  VI+++GIPP  +    A
Sbjct: 119 KKAREENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISEVIERYGIPPGNIPDYLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PG G K AA LL+++G++E +L N   +K   +   + E  ET +LS+
Sbjct: 179 LVGDSSDNIPGLPGCGPKKAAALLKQFGSVEGLLENLDAVKGLSQT-MLSERQETLKLSK 237

Query: 245 KLVMLRTDVPITIPLEHL 262
           +L +L +++PI +P+E L
Sbjct: 238 RLALLDSNIPIPVPIESL 255


>gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
 gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
          Length = 903

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 183/546 (33%), Positives = 286/546 (52%), Gaps = 15/546 (2%)

Query: 435 TSQDSTGK----NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489
            S D +G       LT    + L  +  +    K  H  K+    L   G S+ G   DI
Sbjct: 360 ASPDGSGAAIKTEALTAHDTAALGAWLADPAAPKAFHEAKWAAHALRGQGFSIAGVTTDI 419

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-AIENSNV 548
            L +Y+   G+ S  +  +A ++L          +K    +D   D   + + A+  +  
Sbjct: 420 GLAAYIARPGQRSFQLPDLAVRYLRRQLGPDDSGQKQLSLLDAEQDDNAEANGAVSEAAA 479

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           I +L   L   L       +   ++ P+  V+  ME  GI +DQD L  + A+ S  +  
Sbjct: 480 IRELGEALDDVLAKAGSADLLHTMELPLTFVLGAMEEAGIAVDQDALAGLHADFSARVQQ 539

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPI 667
             E+ Y + G++ NL SPKQL  +LF +L  P   KTKT    T A  L+ +    ++P 
Sbjct: 540 AAESAYAVIGKEINLGSPKQLQVVLFDELGMPKTKKTKT-GHTTDADALQWLFERTEHPF 598

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           + ++LE R  +++ +T A  L   +     R+HT +      TGRL+S +PNLQNIP++T
Sbjct: 599 LSHLLEHRDATRLMTT-AQGLIKAVGP-DGRIHTTFRQDVAATGRLSSTDPNLQNIPVRT 656

Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           +  ++IR  F+     + L++ADYSQIE+RI+AH++    L + F    D+H  VA+  F
Sbjct: 657 EEARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNFVASRAF 716

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV I++V  ++RR  K +++ + YG+S F LA QL +   EA   ++ YF RF G+ +Y+
Sbjct: 717 GVPIDQVGAELRRRVKAMSYGLAYGLSAFGLAQQLGVSGEEAKAQMEAYFARFGGVRDYL 776

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
            +     R+ GY ET+FGRR +  ++ S     R + ERAA+NAPIQGSAADI + AMI 
Sbjct: 777 REVVEEARRKGYTETLFGRRRYLPDLTSDNQQQRAVAERAALNAPIQGSAADIIKVAMIH 836

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V ++L    + ++MLLQ+HDELV EV E E    + ++   M  A    I L VP+ V++
Sbjct: 837 VAEALAARNMRSRMLLQVHDELVLEVAEGEQDELAALVAEQMGSA----IELSVPMDVSV 892

Query: 967 KVSNNW 972
               NW
Sbjct: 893 GFGPNW 898



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 20/303 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  + +   G   NA+ GF +ML  LL++       +H AV F
Sbjct: 8   LLLLDGHSLAFRAFYALPEENFQTAAGQTTNAVYGFVSMLINLLRDEDP----THLAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR ++YP+YKANR K PE    Q+ L++    A GI     +G+EADD+IATY 
Sbjct: 64  DVSRKTFRAKMYPEYKANRSKSPESFPAQVELIKEVLGALGIVVEAHEGYEADDVIATYA 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY------DTVKEEKIDIEHVIKKWGIPPEK 178
             A+++G+ V I++ D+D +QLV+P  T LY      D V+      E V +K+G+ P +
Sbjct: 124 TKAQEQGYQVLIMTGDRDALQLVTPDVTVLYPNRGVSDLVRYTP---EQVQEKYGLTPAQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+P IPG+G KTAA  ++ Y +L+ +L  A  +  K   + + E+ +
Sbjct: 181 YPDFAALRGDPSDNLPKIPGVGEKTAASWVRAYNSLDELLERADEVPGKT-GQALREHLD 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R +R+L  L  D+P+   L  L     +  ++ +    LEF  L +R+  T       
Sbjct: 240 QVRQNRQLTELVRDMPLGHSLAELERRQWDRDQVHALFDQLEFRVLRDRLFATLSA---- 295

Query: 299 IEP 301
           +EP
Sbjct: 296 VEP 298


>gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
 gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
          Length = 887

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 177/535 (33%), Positives = 296/535 (55%), Gaps = 12/535 (2%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRS 501
           +T T E  + L  +  +    K  H  K+    L   G ++ G   D  L +Y++  G+ 
Sbjct: 355 STATPEDEAALGDWLADASQPKALHEAKWAIHALRGRGWTLGGLTSDTALAAYLVRPGQR 414

Query: 502 SHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPK 559
           S ++  ++ ++L    R E     + S+  D    D++  E A+ ++  +L L   L  +
Sbjct: 415 SFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAEAAETAMLSAQAVLDLAAALDTE 474

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L   +   +   ++ P+   ++Q+E TGI +D   L  + +  +  +     + Y++  +
Sbjct: 475 LESIESKSLLSDMELPLTIELAQIEATGIAVDSAHLHDLQSRFASQVADAANSAYEVIDK 534

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLS 678
           + NL SPKQL  +LF +L  P   KTKT  + T A+ L+ + +   +P ++++L  R  +
Sbjct: 535 QINLGSPKQLQVVLFEELDMPKTKKTKT-GYTTDAEALQGLFDKTGHPFLEHLLAHRDAT 593

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           ++K T  D L   + +   R+HT ++     TGRL+S +PNLQNIP++ D G++IR  F+
Sbjct: 594 RMKVT-VDGLLKAVAE-DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGFV 651

Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
                  L++ADYSQIE+RI+AH++    L + F    D+H  V +  FGV IE+V+P++
Sbjct: 652 VGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPEL 711

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           RR  K +++ + YG+S + LA+QL+I   EA   +  YF RF G+ +Y+       R++G
Sbjct: 712 RRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDG 771

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           Y  T++GRR +  ++NS     R + ERAA+NAPIQG+AADI + AMI+V K+L D  L 
Sbjct: 772 YTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALADAGLK 831

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++MLLQ+HDELV EV   E+   + ++   M  A    I L VPL V++    +W
Sbjct: 832 SRMLLQVHDELVLEVVASELEEVTALVKDKMATA----IELSVPLDVSVGTGRSW 882



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 161/292 (55%), Gaps = 16/292 (5%)

Query: 8   FLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  +RAFYA P  + K H G   NA+ GF +ML  LL++ +     +H A  FD
Sbjct: 1   MLLDGHSLAFRAFYALPAENFKTHSGQATNAVYGFTSMLINLLRDEQP----THLAAAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR +++P+YKA R K P+    Q+ + +    A GIP +  +GFEADD+IAT T 
Sbjct: 57  VSRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVLGALGIPVMAEEGFEADDVIATLTT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVCL 182
            AE  G+ V +++ D+D +QLV+   T LY    V E  +     V +K+ + P +    
Sbjct: 117 QAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGVSELTRFTPTAVEEKYSLSPSQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAET 239
            AL GD  DN+PGIPG+G KTA   ++EYG+L+ ++ N  +++ K     REN+      
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLVDNVDKVRGKVGDSLRENL----AN 232

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
             L+R+L  +  DVP+    E L+L   +  ++ +    LEF  L +R+  T
Sbjct: 233 VLLNRQLTEMVRDVPLPYTPEQLVLAPWDREKIHALFDDLEFKVLRDRLFAT 284


>gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 537

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 175/542 (32%), Positives = 283/542 (52%), Gaps = 25/542 (4%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503
           LT +  + L  +  +    K  H++K     L   G S+ G   D  L +Y+   G+ + 
Sbjct: 2   LTPDDEAALGDWLADADVPKAAHDVKAVLHALRSRGWSLAGLTSDTALAAYLARPGQRTF 61

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-----SNVILQLWLLLRP 558
           D+A +A   L Y R+E+     +   +  +  +   +          ++ I +L   L  
Sbjct: 62  DLADLA---LRYLRRELRTEEPADGQLSLLGGADEADAQAAQQEMLAASAIAELADALDT 118

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +L       +   L+ P+  V++  E  GI +D + L  + ++    +    +N Y + G
Sbjct: 119 ELAERGGTELLADLELPLAFVLADCEAAGIAVDSETLSDLESDFGGQVREAAQNAYRVIG 178

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCGDNPIIKNILEWRQ 676
           ++ NL SPKQL  +LF +L+ P   +TKTG + T A  L+ +    G +  ++ +L+ R 
Sbjct: 179 KEINLGSPKQLQVVLFDELEMPKTKRTKTG-YTTDADALQSLYEQTG-HEFLQFLLQHRD 236

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            +++K T  D L   +     R+HT YS     TGRL+S +PNLQN+PI+T  G++IR A
Sbjct: 237 ATRLKVTV-DGLIKSVAD-DGRIHTTYSQTIAATGRLSSTDPNLQNVPIRTAAGRRIRDA 294

Query: 737 FI------SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           F+           +L++ADYSQIE+RI+AH+++   L + F +  D H   AA +FGV  
Sbjct: 295 FVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIEAFRSQHDFHAETAARVFGVEA 354

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
             VS + R   K +N+ + YG+S + L+ QLRI   EA   +  YF  F G+ +Y+    
Sbjct: 355 AGVSVEQRAKIKAMNYGLAYGLSAYGLSGQLRISTDEAKGLMDDYFAGFGGVRDYLAGVV 414

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           +  R++GY  TI GRR +  ++ S     R + ER A+NAPIQGSAADI + AM+ V ++
Sbjct: 415 DQARKDGYTATILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLGVRRA 474

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L    L ++MLLQ+HDELV EV + E  T   ++   M  A     +L VPL+V++    
Sbjct: 475 LSAEGLRSRMLLQVHDELVLEVADGERETCEALVRREMAAAA----DLSVPLEVSVGYGR 530

Query: 971 NW 972
           +W
Sbjct: 531 SW 532


>gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
 gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
          Length = 900

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 182/519 (35%), Positives = 289/519 (55%), Gaps = 17/519 (3%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
           +F  I  N KYD  ++   + I +  F D ++++++LDS  S   + ++A+ +  +T   
Sbjct: 392 NFKLIVQNFKYDFDIIKFNFDIELNLFADTIILAWLLDSS-SKVGLDALAKNYFDHTMIA 450

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR---PKLIVEKLLHVYERLDKPM 576
                K       +  S    +A E++ +  +++  L     K   E LL +    +   
Sbjct: 451 FKDVVKKGDDFSTVDISNACNYAAEDALMTYKIYFKLLEEFKKQNCEHLLKIANDYEFKF 510

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           IDV+  M+  G++ID  +LK +  +  + +  L + I++L+G KFN++SPKQLG ILF  
Sbjct: 511 IDVLINMQNNGVKIDTQILKNLKIQNQEYIQELTKKIHELAGTKFNINSPKQLGVILFEN 570

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI-NKR 695
           L   +  K KTG + T    L ++    + II  IL++R+  K++STY + L     N  
Sbjct: 571 LGLTASKKGKTG-YSTNEVVLNKL-VDSHEIIPVILDYREAYKLQSTYIEPLLELASNDS 628

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
             +++T +    T TGRL+S  PNLQNIP+K+  G++IR+AFI+    KL+  DYSQIEL
Sbjct: 629 ENKIYTSFLQTGTATGRLSSKNPNLQNIPVKSSAGREIRKAFIARDGYKLVGIDYSQIEL 688

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LAH +K   L   F + LDIH   A +IFG   E+ + Q R  AKTINF ++YG+   
Sbjct: 689 RLLAHFSKDKALVDAFNSDLDIHSQTAVKIFG---EEKASQKRNIAKTINFGLLYGMGSK 745

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
           +LA  L+I   EA  YI  YF  F  + EY++  ++F  +NGYVET+  RR  +D  N+ 
Sbjct: 746 KLADTLKITPKEAKVYIDSYFEAFTNVKEYMKSIEDFALENGYVETLIKRRRIFD-FNAA 804

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +  R    R A+N   QGSAAD+ + +MI + +  ++++   KM+LQIHDEL+FEV  E
Sbjct: 805 NTMQRIGYLREAVNTKFQGSAADLIKLSMIKIFEKYKNNE-DLKMILQIHDELIFEVKNE 863

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +       I + ++K       L +PLKV++ V N+W +
Sbjct: 864 K----QDEITNDLKKIMENIFTLEIPLKVSVAVGNSWGD 898



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 155/288 (53%), Gaps = 19/288 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D   F++R+FYA P L  K DG P   + GF N     + N  K+    +     D  
Sbjct: 14  VIDTFGFLFRSFYALPPLKSK-DGFPTGLLTGFMN----FISNIGKDFQTDYIVFALDSK 68

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFRN IY  YK++RP +PE LL QLP+     +  G       GFEADD+IA+  + A
Sbjct: 69  GDTFRNAIYDQYKSHRPDVPEDLLKQLPVAISWIEEMGFKTAIKSGFEADDLIASIAHDA 128

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
            ++   V I+S DKDL QL+   T  L+D +K+  I+ E   +K+G+ P +    Q+L G
Sbjct: 129 RQKDLEVRIVSHDKDLYQLIDDDTVYLFDPIKKIIINEEKCYEKYGVHPNQFTDYQSLLG 188

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           DS DN+PG+ G+G KTA  L++E+G LENI  N   + + + +  +LE  E A +S++LV
Sbjct: 189 DSADNVPGVKGVGAKTAEALIKEFGTLENIYENIESVSKPRWKTLLLENKEMAFISKELV 248

Query: 248 MLRTDV-------PITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            L+ D           +P E+ IL      ++   L   + TK++ RV
Sbjct: 249 TLKKDCHCIDFLDQFELPKENPIL------KIQDTLAKYDLTKIVERV 290


>gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 912

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 169/529 (31%), Positives = 294/529 (55%), Gaps = 14/529 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           L  +  +    KIGH++K     +   G +  G   D  L +Y+   G+ +  +  +A +
Sbjct: 388 LSAWLADPEIRKIGHDLKVPLHAVRARGWTFGGLNMDTALAAYLARPGQRTFGLDDLALR 447

Query: 512 WLSYT-RKEILKSRKSSIPIDKISDSQVQEH---AIENSNVILQLWLLLRPKLIVEKLLH 567
           +L    R E          +D  +D   Q+     +  +  I +L   L  +L       
Sbjct: 448 YLHRELRSEAGDGDGQLSLLDGGADELEQKEISAELVKARAIFELAGALAAELEELGGAK 507

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   L+ P+++V++++E  GI +D D L ++ A     +    E+ Y++ G++ NL SPK
Sbjct: 508 LLAELELPLLEVITELEAAGIAVDTDQLTELEAHYLSRVTQAAESAYEVIGKQINLGSPK 567

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYAD 686
           QL  +LF +L  P   +TKTG + T A  L+ +    ++P ++++LE R  +++++T   
Sbjct: 568 QLQVVLFDELGMPKTKRTKTG-YTTDADALQSLFEKTEHPFLQHLLEHRDATRLRTTVEG 626

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            + +  +    R+HT        TGRL+S+EPNLQNIP++T+ G++IR AF+      +L
Sbjct: 627 LIKSVADD--GRIHTTLQQTIAATGRLSSIEPNLQNIPVRTEEGRRIRDAFVVGDGYAEL 684

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ++ADYSQIE+RI+AH++K   L + F +  D+H  VA+  F V   +++P+ R   K ++
Sbjct: 685 MTADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRYRVKAMS 744

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           + + YG+S + L+ QL+I   +A + ++ YF RF G+ +Y++       + GY ETIFGR
Sbjct: 745 YGLAYGLSAYGLSQQLKISTEDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETIFGR 804

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  ++NS     R + ER A+NAPIQGSAADI + AM++VH++L +    +++LLQ+H
Sbjct: 805 RRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVHRALAEAGARSRVLLQVH 864

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DELV E+ + E +   +++   M  A      L VPL+V++    +W E
Sbjct: 865 DELVLEIADGERSDVEKLVREGMGSAA----ELAVPLEVSVGYGRSWNE 909



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 158/293 (53%), Gaps = 17/293 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  + R   G   NA+ GF +ML  LL++ +     +H AV F
Sbjct: 24  LLLIDGHSMAYRAFFALPAENFRTKTGQVTNAVFGFTSMLINLLRDEKP----THLAVAF 79

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y DYKANR   P+    Q+ LV+      GIP++  + +EADD+IAT T
Sbjct: 80  DLSRKTFRSETYADYKANRSTTPDEFRGQVDLVKEVLDVLGIPSLTKENYEADDVIATLT 139

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
             A  E + V I + D+D +QLV+       P   + D V   +   E V +K+G+ P +
Sbjct: 140 TQA-GEDYDVLICTGDRDALQLVTDRVTVLYPKRGVSDLV---RFTPEAVEEKYGLTPTQ 195

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA  ++++G+L +++     +K K   + + E+  
Sbjct: 196 YPDFAALRGDPSDNLPGIPGVGEKTAAKWIRQFGSLADLIDRVDEVKGKV-GDALREHLS 254

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           + +L+R+L  L  DVP+    + L L   N   +      LEF  L +R+  T
Sbjct: 255 SVQLNRQLTELVRDVPLESVPDQLELRPWNREAVHRLFDELEFRVLRDRLFET 307


>gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 314

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/306 (47%), Positives = 202/306 (66%), Gaps = 5/306 (1%)

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL+S +PNLQNIPI+ +
Sbjct: 12  KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 71

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
            G++IR+AFI+     +++ADYSQIELRI+AH++    L   F    DIHR  AAEIFGV
Sbjct: 72  EGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGV 131

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
           ++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+  YF R+P + +++  
Sbjct: 132 SLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTD 191

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
            +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+QG+AADI +RAMI + 
Sbjct: 192 IRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKID 251

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           + +  H    +M++Q+HDELVFEV  E++    + I   ME A      L VPL V + V
Sbjct: 252 EVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA----ELVVPLIVEVGV 306

Query: 969 SNNWQE 974
             NW E
Sbjct: 307 GKNWDE 312


>gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium glutamicum ATCC 13032]
          Length = 905

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 171/500 (34%), Positives = 276/500 (55%), Gaps = 19/500 (3%)

Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           ++ RGFE      D  + +Y+L  G+ ++++A + Q+ L   R+         + +   +
Sbjct: 412 LAGRGFELHGVVHDTAIAAYLLRPGQRTYELADVYQRHLQ--RQLSTNDNGGQLTLLDAA 469

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID-QD 593
           D Q     +++   IL+L   L  +L   +   +Y  L+ P+  ++++ME  GI +D   
Sbjct: 470 DDQ---SLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVAT 526

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           L +Q+   I +     E           NLSSPKQL  +LF     P   KTKTG     
Sbjct: 527 LEEQLKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAA 586

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+         +P + ++L  RQ  K+K+T  + L   +     R+HT ++     TGRL
Sbjct: 587 AEIEALAIKNPHPFLDHLLAHRQYQKMKTTL-EGLIREVAP-DGRIHTTFNQTVASTGRL 644

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++T+ G+KIR  F+     + L++ADYSQIE+R++AH+++   L + + 
Sbjct: 645 SSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYR 704

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  V +++F V I+ V+P++RR  K +++ ++YG+S F L+ QL IP  EA   +
Sbjct: 705 EGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQQLSIPAGEAKQIM 764

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RF G+  Y+ +     R+ GY ET+FGRR +  E+ S     R   ERAA+NAPI
Sbjct: 765 ESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVARENAERAALNAPI 824

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI V +SL++  + +++LLQ+HDELV EV   E+    +I+   M+ A 
Sbjct: 825 QGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNA- 883

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              I L VPL+V+     NW
Sbjct: 884 ---IKLSVPLEVSAGDGVNW 900



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 150/288 (52%), Gaps = 11/288 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAF+A P  +     G   NA+ GF +ML  LL++ +     +H AV F
Sbjct: 25  LMLIDGHSMAFRAFFALPAENFSTSGGQATNAVYGFLSMLSTLLKDEQP----THVAVAF 80

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR +++P YKA R   P     Q+ +++      GI  IE   FEADD+IAT +
Sbjct: 81  DVGRKTFRTDMFPAYKAQREATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDVIATLS 140

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+  GF   I++ D+D  QLV+ TT +   +K      +   E V +K+G+ P +   
Sbjct: 141 VAAKPLGFKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTPRQYPE 200

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P IPG+G KTA   + +Y  L+N+L +A  IK  K   ++ E  E  R
Sbjct: 201 FAALRGDPSDNLPNIPGVGEKTATKWIAQYETLDNLLDHADEIK-GKVGASLRERIEQVR 259

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288
           ++RKL  +  D+ + +  +   ++      + +    LEF T L  RV
Sbjct: 260 MNRKLTEMVKDLELPLGPDDFEMKPVQVAEVAAKFDDLEFGTNLRERV 307


>gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92]
 gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92]
          Length = 879

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 189/526 (35%), Positives = 293/526 (55%), Gaps = 45/526 (8%)

Query: 465 IGHNIKYD-KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KE 519
           +G N+KYD K+V    G+     F+D M+++++ D  ++   + ++A++  +Y     ++
Sbjct: 381 VGQNLKYDFKVVKRNLGLEPPVKFKDTMVLAWLADPSQAV-GMDALAKRLYNYDTIKFED 439

Query: 520 ILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWL----LLRPKLIVEKLLHVYERLD 573
           +++  +  +S+P++  +     ++A E++ + L+ +     LL P LI  +L + +E   
Sbjct: 440 VVRRGETFASVPLENAA-----KYAAEDAWITLKFYKSFLNLLDPALI--ELANAHEF-- 490

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P I  +  ME  GI I++  ++ +  +    +  L   IY+L+GE FN++S KQLG +L
Sbjct: 491 -PFILTLFDMESVGIAINKKKMQNLILQNDAKIKILTSEIYELTGENFNINSVKQLGAVL 549

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F  LK P   KTKTG     A   E I+   + +I  +LE+R+L K++STY + L N  N
Sbjct: 550 FEHLKLPVKKKTKTGYSTDEAVLAELIDA--HLVIAKLLEYRELYKLQSTYCEPLLNLAN 607

Query: 694 K-RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           K    R++T +    T TGRLAS  PNLQNIP +  L + +R  F +      +  DYSQ
Sbjct: 608 KDENSRIYTNFVQTGTSTGRLASKNPNLQNIPARGSLAKDVRETFEAKEGYSFVGLDYSQ 667

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELR+LAH ++   L + FEN  DIH   A  IFG        Q R  AK+INF +IYG+
Sbjct: 668 IELRLLAHFSRDEALLKAFENDEDIHARTAISIFG----SADGQNRAVAKSINFGLIYGM 723

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
              +LA Q+ I R+EA +YI+RYF  FP I  ++E  K   +  G+V T+ GR+  +D  
Sbjct: 724 GSSKLAGQVNISRAEAKEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLLGRKRFFDFT 783

Query: 873 NS-PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           N+ P  +   + ER A+N   QGSAADI + AM+ +        +  KMLLQIHDEL+FE
Sbjct: 784 NATPMQTA--MYEREAVNTIFQGSAADIIKLAMVKIRPLC---SVRAKMLLQIHDELIFE 838

Query: 932 VPEE---EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           V +E   E   A+Q I+  + K       L VPLK ++ V+ NW E
Sbjct: 839 VADEHAAEFGEAAQKIMQEIYK-------LNVPLKTSLNVAKNWGE 877



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/249 (35%), Positives = 137/249 (55%), Gaps = 6/249 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA P L +  DG P   I+GF N +  L    + E  + +     +
Sbjct: 4   LTIIDTFGFFFRLYYAMPNL-KNRDGKPSGMISGFANFILNL----KNEFPSDYIIFALE 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T R++I  DYKANR + P  L  QLP+     +  G+ AI  +G+EADDIIAT   
Sbjct: 59  GKGETLRHKIAGDYKANRSEAPAALKEQLPVCIEMIEKMGLCAISREGYEADDIIATAVR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           +A+ +   V +++ DKDL QL+      +Y  + + + D    ++K+G+ PE++    A+
Sbjct: 119 LAKSQDVFVRVVTHDKDLYQLIEDGKVSIYSPLSKIEHDTASCVEKYGVRPEQIRDFLAI 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG   A  LL E+G+LE I  N + ++ ++ RE +    E+A LS++
Sbjct: 179 AGDSSDNIPGVKGIGAVGAKKLLAEFGSLEAIYENLALVRNERTREMLAAGRESAFLSKR 238

Query: 246 LVMLRTDVP 254
           L  L  D P
Sbjct: 239 LTTLFDDAP 247


>gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 895

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 238/412 (57%), Gaps = 9/412 (2%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           E+   V + ++ P++ V+++ME+ G+ ID   L ++   ++     L    Y   G + N
Sbjct: 486 ERTRAVLDEIELPLVAVLAEMELNGVAIDAVALTRLRDRLTGKASDLAARAYAEIGHEIN 545

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIK 681
           L SPKQL  +LF +L  P    TKTG + T A  L  +     +P +  +L+ R  +K+K
Sbjct: 546 LGSPKQLQQVLFEELGMPKTRSTKTG-YSTDAASLADLQEKSPHPFLGLLLQHRDATKLK 604

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
               ++L   +     R+HT Y    T TGR++S +PNLQNIPI+T+ G++IR +F+S  
Sbjct: 605 QI-VETLERSVTG-DGRIHTTYDQTGTSTGRISSNDPNLQNIPIRTEEGREIRSSFVSGG 662

Query: 742 TKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
             + L++ADYSQIE+RI+AH++    L + F    D+HR V + +FGV  E+V+P MR  
Sbjct: 663 EDETLLTADYSQIEMRIMAHLSDDPGLIEAFNAGEDLHRFVGSRVFGVPPEEVTPLMRTK 722

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K +++ + YG+S F L+ QLRI  SEA + +  YF RF  + +Y+       R +G+ E
Sbjct: 723 VKAMSYGLAYGLSAFGLSKQLRIETSEARELMNGYFERFGAVRDYLRNVVEQARLDGFTE 782

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           TIFGRR  + ++ S    +R   ER A+NAPIQGSAADI + AM+ +   + D +L ++M
Sbjct: 783 TIFGRRRPFADLTSTNRVLRENAERQALNAPIQGSAADIMKIAMLGIAGDMSDQRLGSRM 842

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LLQ+HDEL+FEV   E      I+   M  A     +LRVPL V I   + W
Sbjct: 843 LLQVHDELIFEVAPGEGDALETIVRARMVGAA----DLRVPLDVQIGRGSTW 890



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 152/296 (51%), Gaps = 11/296 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ S    +G   NAI GF  ML  LLQ  +     +H AV F
Sbjct: 9   LLVIDGHSLAFRAFYALPVDSFVNREGQHTNAIHGFIAMLINLLQQQKP----THLAVAF 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR   YP+YK  R + P     Q+PL+  A  A  I  I  + +EADDI+AT  
Sbjct: 65  DVSRASFRTREYPEYKGTRGETPPEFAGQVPLLEEALHAMNIQTIAKEDYEADDILATLA 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVK---EEKI-DIEHVIKKWGIPPEKMV 180
               +EG+ V ++S D+D +QLV+   T LY  V+   E K+ D   V +++GI P +  
Sbjct: 125 RRGVEEGYRVLLVSGDRDTIQLVTDEVTLLYPNVRGVSELKVYDPAAVRERYGIEPHQYP 184

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL G++ DN+ GI  +G KTA   +Q YG + NI+ +A  I      +N+ +  E A
Sbjct: 185 EIAALVGETSDNLIGIDKVGEKTAVKWVQRYGTVANIVAHAGEITGVV-GQNLRDQQENA 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +R+L  L  DV + +    L     +   +      L+F  L++R+  T   D 
Sbjct: 244 LRNRRLNKLLDDVELPVGPSDLARRPLDENAVRDIFARLQFKTLLDRLLKTAAEDG 299


>gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032]
          Length = 880

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 171/500 (34%), Positives = 276/500 (55%), Gaps = 19/500 (3%)

Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           ++ RGFE      D  + +Y+L  G+ ++++A + Q+ L   R+         + +   +
Sbjct: 387 LAGRGFELHGVVHDTAIAAYLLRPGQRTYELADVYQRHLQ--RQLSTNDNGGQLTLLDAA 444

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID-QD 593
           D Q     +++   IL+L   L  +L   +   +Y  L+ P+  ++++ME  GI +D   
Sbjct: 445 DDQ---SLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVAT 501

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           L +Q+   I +     E           NLSSPKQL  +LF     P   KTKTG     
Sbjct: 502 LEEQLKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAA 561

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+         +P + ++L  RQ  K+K+T  + L   +     R+HT ++     TGRL
Sbjct: 562 AEIEALAIKNPHPFLDHLLAHRQYQKMKTTL-EGLIREVAP-DGRIHTTFNQTVASTGRL 619

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++T+ G+KIR  F+     + L++ADYSQIE+R++AH+++   L + + 
Sbjct: 620 SSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYR 679

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  V +++F V I+ V+P++RR  K +++ ++YG+S F L+ QL IP  EA   +
Sbjct: 680 EGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQQLSIPAGEAKQIM 739

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RF G+  Y+ +     R+ GY ET+FGRR +  E+ S     R   ERAA+NAPI
Sbjct: 740 ESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVARENAERAALNAPI 799

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI V +SL++  + +++LLQ+HDELV EV   E+    +I+   M+ A 
Sbjct: 800 QGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNA- 858

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              I L VPL+V+     NW
Sbjct: 859 ---IKLSVPLEVSAGDGVNW 875



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 149/287 (51%), Gaps = 11/287 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  +RAF+A P  +     G   NA+ GF +ML  LL++ +     +H AV FD
Sbjct: 1   MLIDGHSMAFRAFFALPAENFSTSGGQATNAVYGFLSMLSTLLKDEQP----THVAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR +++P YKA R   P     Q+ +++      GI  IE   FEADD+IAT + 
Sbjct: 57  VGRKTFRTDMFPAYKAQREATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDVIATLSV 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            A+  GF   I++ D+D  QLV+ TT +   +K      +   E V +K+G+ P +    
Sbjct: 117 AAKPLGFKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTPRQYPEF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+P IPG+G KTA   + +Y  L+N+L +A  IK  K   ++ E  E  R+
Sbjct: 177 AALRGDPSDNLPNIPGVGEKTATKWIAQYETLDNLLDHADEIK-GKVGASLRERIEQVRM 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288
           +RKL  +  D+ + +  +   ++      + +    LEF T L  RV
Sbjct: 236 NRKLTEMVKDLELPLGPDDFEMKPVQVAEVAAKFDDLEFGTNLRERV 282


>gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
 gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
          Length = 912

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 176/534 (32%), Positives = 293/534 (54%), Gaps = 23/534 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L  +  +    K+ H +K   L +   G  + G   D  L +Y+   G+ S D+A +A +
Sbjct: 387 LADWLADPDAQKVVHEVKGPLLAVWARGWDLAGVVSDTALAAYLALPGQRSFDLADLAVR 446

Query: 512 WLSYTRKEILKS--RKSSIPIDKISDSQVQEHAIENSNV-ILQLWLLLRPKLIVEKLLH- 567
           +L   R+E+  S   ++ + +D +  S+ ++ A E ++  +L+   +      ++ LL  
Sbjct: 447 YL---RRELKDSAAEETQLTLDGMGPSE-EDLAREAAHADVLKAVAVNDLSDALDSLLGQ 502

Query: 568 -----VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
                +   ++ P+  V+++ME  GI  D D L ++  E +  + +     Y + G + N
Sbjct: 503 RGGDALLGGIELPLTFVLARMEQRGIAADLDFLHELQREFADGVAAAAAEAYAVIGREVN 562

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIK 681
           L SPKQL  +LF +L  P   K K+G + T A+ L  +     +P ++++L  R +++++
Sbjct: 563 LGSPKQLQAVLFDELGLPKTKKIKSG-YTTDAEALTNLLAQTGHPFLEHLLRHRDVTRLR 621

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SP 740
           +     +P  +     R+HT +      TGRL+S++PNLQNIPI+T  G++IR+AF+   
Sbjct: 622 TVIDGLIP--MVDDGGRIHTTFQQTIAATGRLSSIDPNLQNIPIRTAEGRRIRQAFVVGS 679

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
             + L++ADYSQIE+RI+AH++    L + F +  D+H  VA+  + + IE V P+MRR 
Sbjct: 680 GHESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHSFVASRAYDIPIEDVDPEMRRR 739

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K +++ + YG+S + LA QLRI   EA + +  YF RF GI EY++   +  RQ GY E
Sbjct: 740 IKAMSYGLAYGLSAYGLAGQLRISVEEAREQMHAYFERFGGIREYLDGVVDDARQTGYTE 799

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T  GRR +  ++ S     R + ER A+NAPIQGSAAD+ + AM+ V +++ D  L ++M
Sbjct: 800 TTLGRRRYLPDLTSDNGQRRQMAERMALNAPIQGSAADVIKVAMLRVEQAIADEGLRSRM 859

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQ+HDELV EV   E      ++   M  A      L VPL+V++     W E
Sbjct: 860 LLQVHDELVLEVAPGEREALETLVRREMAGAA----QLSVPLEVSVGFGRTWDE 909



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/290 (35%), Positives = 155/290 (53%), Gaps = 10/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H AV F
Sbjct: 22  LLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THVAVAF 77

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNEIY +YKANR + P     Q+ L++    A  +P I  +G+EADD+IAT T
Sbjct: 78  DVGRKTFRNEIYAEYKANRSESPTDFRGQVSLIQEVLAALHVPVITAEGYEADDVIATLT 137

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A ++G  V I + D+D +QLV+   T LY         +   E V  K+G+ P +   
Sbjct: 138 VAAVEQGMDVLICTGDRDALQLVNEHVTVLYPRKGVSDLTRFTPEEVEAKYGLSPAQYPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P IP +G KTAA  ++EYG+L+ ++     +K K   E + E+  +  
Sbjct: 198 FAALRGDPSDNLPSIPSVGEKTAAKWVREYGSLDALVDQVDTVKGKV-GEKLREHLSSVL 256

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +R+L  L   VP+ +    L +   +   + +    L+F  L +R+  T
Sbjct: 257 QNRRLTELDRAVPLELGPADLAVRAWDRNEVHTLFDNLQFRVLRDRLFAT 306


>gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
 gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
          Length = 837

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 157/407 (38%), Positives = 237/407 (58%), Gaps = 7/407 (1%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P+  V++ ME  G  +D D ++     +   L  + ++IY+  G +FN++SPK
Sbjct: 436 LHDEMELPLARVLADMERIGFAVDADGIRAFGDSLRGELDGILQSIYEEVGYEFNVNSPK 495

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG+ LF KL  P   KT  G + T A  LE +    +P+I  IL++R  +K+ STY + 
Sbjct: 496 QLGEALFDKLGLPPRKKTSRG-YSTDAATLESLRP-YSPVIDQILKYRTYAKLLSTYVEG 553

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L +       RVH+ +      TGR++S EPNLQNIPI+T+LG ++R  F++   K+L+ 
Sbjct: 554 LLS-AQAADGRVHSTFIQTEARTGRISSTEPNLQNIPIRTELGSRLRGFFVAGAGKELVD 612

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELRILAHI     + Q F +  DIHR  AA+I+ +   +V+PQ+R  +K INF 
Sbjct: 613 ADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVTPQLRSASKAINFG 672

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I+YG   F L+  L +   EA  ++K Y   FP +  Y++      ++ GYVET+FGRR 
Sbjct: 673 IMYGKGAFSLSKDLDVSVKEADAFLKTYLATFPKVDGYMQDCIAHAKEKGYVETLFGRRR 732

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
              E+ S    +R   ER A N PIQG+AADI + AM+ V + L D KL  ++LLQ+HDE
Sbjct: 733 ALPELASSNFQVRASGERMARNTPIQGTAADIIKLAMVHVWQRLRDEKLEARLLLQVHDE 792

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+ E PE E+    +++   ME+     +   VPL  ++     W E
Sbjct: 793 LIVEAPEAEVEEVKRVLREEMEQV----VQYSVPLTTDVGTGKTWLE 835



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 157/285 (55%), Gaps = 10/285 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S + RAF+   LL+ K DG   NAI GF N+L  LL   + +++A    + +D
Sbjct: 3   LMVLDGNSLVNRAFFGIKLLTTK-DGRYTNAIFGFQNILLNLLSAHQPDAVA----IAWD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR++ Y  YKA R  +PE L  Q+P+++   +  G   +  +G+EADDI+ T   
Sbjct: 58  ERAPTFRHKAYDGYKATRHGMPEELAQQMPVLKELLKDLGFVQVSKEGWEADDILGTLAA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQA 184
             E +G    + + D+D +QLV   TT L  T KE   +D   + +K+G+ P +++ +++
Sbjct: 118 ACEAQGGTTLLATGDRDSLQLVDDATTVLLATNKETIPMDPAAIQEKYGVTPAQLIDVKS 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETARL 242
           L GDS DNIPG+PGIG KTA  L+Q++G+L++I   +    IK  +R + +    + A L
Sbjct: 178 LMGDSSDNIPGVPGIGEKTALALVQKFGSLQSIYDHLEDPAIKPGQRTK-LGANRDKAEL 236

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           S  L  +R D PI            +       L  LE  KLI+R
Sbjct: 237 SYMLGTIRKDAPIDTDPAAYTRRPGDPTAAAHLLAGLEMHKLIDR 281


>gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 879

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 157/414 (37%), Positives = 240/414 (57%), Gaps = 9/414 (2%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           E++  V + ++ P +  ++ ME+ G+ +    L   SAE+     +L  + Y   G + N
Sbjct: 470 ERVAEVLDDIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYAAIGHEVN 529

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIK 681
           L SPKQL ++LF +L+ P   KTK+G + T A  L  +     +P +  +L+ R+ +K+K
Sbjct: 530 LGSPKQLQEVLFDELQLPKTRKTKSG-YTTDAAALADLQESAPHPFLDLLLKHREATKLK 588

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISP 740
               D+L +       R+HT Y    + TGRL+S +PNLQNIPI+T+  ++IR AF +  
Sbjct: 589 QII-DAL-DTATGPDGRIHTTYVQTGSQTGRLSSTDPNLQNIPIRTEESRRIRAAFEVGE 646

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
             + L++ADYSQIE+RI+AH++    L + F +  D+HR V A +FGV   +V+P MR  
Sbjct: 647 GYETLLTADYSQIEMRIMAHLSGDPGLIEAFNSGEDLHRFVGARVFGVEPAEVTPAMRTK 706

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K +++ ++YG+S F L+ QLRI +SEA   +  YF RF  + +Y+  +    RQ+GY E
Sbjct: 707 VKAMSYGLVYGLSAFGLSKQLRIEQSEAKKLMLEYFARFGAVRDYLRGSVEQARQDGYTE 766

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           TIFGRR  + ++ S    +R   ERAA+NAPIQGSAADI + A+  + + L    L +++
Sbjct: 767 TIFGRRRPFPDLTSMNRVLRENAERAALNAPIQGSAADIMKVALFRIREELASAGLRSRV 826

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQIHDELV E+   E     +I+   M  A      L VPL V I    +W E
Sbjct: 827 LLQIHDELVVEIAPGEWDAVERIVRARMADAA----ELSVPLDVQIGRGGDWDE 876



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 13/299 (4%)

Query: 7   LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L +VDG S  YRAFYA P+   S K DG   N I GF +M   L++  +     +H AV 
Sbjct: 9   LLVVDGHSLAYRAFYALPVDNFSTK-DGQHTNGIYGFLSMFVNLVKAEKP----THLAVA 63

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    +FR   Y +YKANR + P     Q+PL++   +A G+P ++ + FEADDI+AT 
Sbjct: 64  FDTSRQSFRTREYAEYKANRSESPAEFKGQIPLLQECLEAMGVPVLKKEDFEADDILATL 123

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               E +GF V + S D+D +QLV+   T LY  V+     ++ D   VI+K+G+PPE+ 
Sbjct: 124 ATQGEAQGFQVLVCSGDRDTIQLVTDDITLLYPNVQGVSQLKRYDTAAVIEKYGLPPEQY 183

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL G++ DN+PG+P +G KTA   L ++G+L+ +L NA ++       N+ E+ + 
Sbjct: 184 PDIAALVGETSDNLPGVPKVGEKTAVKWLTQWGSLDALLENADKVTGVV-GNNLREHLDG 242

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            R +R L  L  DV + +    L ++  +G  +      LEF  L+ RV      DA +
Sbjct: 243 VRRNRALNRLLRDVELPVGPSDLQMKPLDGQAVRDIFARLEFRTLLPRVFDALGGDAGD 301


>gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 897

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 278/513 (54%), Gaps = 13/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           KI HN K    V   +G  + G   D  L +Y++  GR S  + +++   L Y  +E+  
Sbjct: 391 KILHNAKGVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALS---LEYLGRELAP 447

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +      +   +D + + HA+   +  +L L      +L       +   ++ P   +++
Sbjct: 448 ATADG-QLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQVGATGLLADVELPTSILLA 506

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            +E  GI  D+D L+ +  + +  +    +  +D  G +FNL SPKQL ++LF +L  P 
Sbjct: 507 SLERAGIAADRDHLEAMERQFAAAVQQAVKEAHDAVGREFNLGSPKQLQEVLFGELNLPK 566

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               D+ +   +L  R+ +K++ T  + L   I     R+HT
Sbjct: 567 TKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVTV-EGLIKSIAT-DGRIHT 624

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S EPNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 625 TFNQTVAATGRLSSTEPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAH 684

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H  VA+++FGV  + V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 685 LSQDEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 744

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I   EA   +  YF RF G+ +Y+    +  R  GY ET+ GRR +  ++NS     R
Sbjct: 745 LNIDAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGRRRYLPDLNSDNRQRR 804

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM+ VH++L + +L+++MLLQ+HDE+V E+   E    
Sbjct: 805 ETAERMALNAPIQGTAADIVKIAMLRVHRALTEARLSSRMLLQVHDEIVLEIAPGERERV 864

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +I+   M  A    + LR PL V++ V  NW+
Sbjct: 865 EEIVRREMADA----VQLRAPLDVSVGVGQNWE 893



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/254 (39%), Positives = 143/254 (56%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 12  LMLMDGHSLAYRAFFALPAENFTTVTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 67

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E + +YKANR K P+    Q+ L+     A   P   + GFEADD+IAT  
Sbjct: 68  DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAPRFAVDGFEADDVIATLA 127

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QL+S  TT LY T  V E  +   E V +K+G+ P +   
Sbjct: 128 TQAEAAGFEVLIVTGDRDSFQLISDHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPD 187

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ E  +
Sbjct: 188 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 246

Query: 242 LSRKLVMLRTDVPI 255
           L+R+L  +  DV +
Sbjct: 247 LNRRLTEMIRDVEL 260


>gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 896

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 178/527 (33%), Positives = 274/527 (51%), Gaps = 39/527 (7%)

Query: 473 KLVLH-----RYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           +LV+H     R+ ++ RG+       D ML +Y+    + SH +  +  + L     E+ 
Sbjct: 379 RLVVHDAKGVRHALASRGWTLGEVAFDTMLAAYLAHPDQRSHKLTDVVARILGI---EVS 435

Query: 522 KSRKSSIPIDKISDSQVQEHA-IENSNVILQLWLL---LRPKLIVEKLLHVYERLDKPMI 577
           ++       D     +    A +    +  QL  L   LR  L   K L +   ++ P+ 
Sbjct: 436 EAADEGALFDMDESEEGPTGAEMRAGRIAAQLIPLAERLRRTLEESKELGLLSDMEMPLA 495

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++  ME TGI +D  +L  +SAE+  ++       ++ +G + NLSSPKQL ++LF   
Sbjct: 496 RLLGDMEATGIGVDTGVLSDLSAELGADVEKARRGAWEAAGREVNLSSPKQLQELLFDHF 555

Query: 638 KFPS----------GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
             P            A+     W  T    E      +  +  +L  R   K+K    DS
Sbjct: 556 ALPKTKKTKTGYTTNAEALADLWAKT----EASGGAGHRFLGYLLAHRDRIKLKQMV-DS 610

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   +    +R+HT +S  +  TGRLAS +PNLQNIP ++  G +IR AF   P    L+
Sbjct: 611 LIATVGA-DERIHTTFSQVAAATGRLASSDPNLQNIPARSPDGMRIRGAFTPGPGYASLM 669

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           SADYSQIE+R++AH++    L + F +  D+HR +A+ +FG  +E+VS + R   K  ++
Sbjct: 670 SADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVEQVSGEERSRIKATSY 729

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            + YG+S + LA QL I   EAA    RYF RF  + +Y+E      R +GY ET+FGRR
Sbjct: 730 GLAYGLSSYGLAAQLGIAVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTETMFGRR 789

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  ++ S     R + ERAA+NAPIQGSAADI + AM++V  +L +  LAT++L+QIHD
Sbjct: 790 RYLPDLRSSNRQRREMAERAALNAPIQGSAADIVKIAMMNVASALANEGLATRLLVQIHD 849

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           EL+ E+   E   A +++   ME A    + L VPL V + V  +WQ
Sbjct: 850 ELLLEIAPGEADVAEKLVRERMEGA----VALSVPLDVAVGVGASWQ 892



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 156/304 (51%), Gaps = 18/304 (5%)

Query: 7   LFLVDGSSFIYRAFYATP-----LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + ++DG S  +RAFYA P       + +H     NA+ GF +ML +LL+  +     +H 
Sbjct: 1   MLIIDGHSMAFRAFYALPPENFVTATGQH----TNAVYGFVSMLARLLETEKP----THV 52

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    +FR E YP+YK  R   PE    Q+ L+R    A GI A+  +GFEADDI+
Sbjct: 53  AVAFDVSRHSFRTEEYPEYKGTRDATPEEFKGQVELIREVLDAMGIVALSREGFEADDIL 112

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE---EKIDIEHVIKKWGIPPE 177
           AT  Y A  EG +V ++S D+D  Q V+   T LY         ++  E +  K+G+PP 
Sbjct: 113 ATLAYQAGHEGASVLVVSGDRDTFQTVTQNVTVLYPGTGPGDLRRMTPEAIEAKYGVPPH 172

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +   + A+ G++ DN+PG+PG+G KTAA  +  +  L+N+L  A  I   KR   + E+ 
Sbjct: 173 RYPEIAAIVGETSDNLPGVPGVGPKTAAQWINRFDGLDNLLERAHEIG-GKRGAALREHT 231

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +    +R+L  L TD+ + +    L+    +   +     ALEF +L  +V         
Sbjct: 232 DDVVRNRRLNRLVTDMDLGLTRADLVRRATDVAAVDRLFDALEFGRLRAKVREVSGVGMG 291

Query: 298 NIEP 301
             EP
Sbjct: 292 QGEP 295


>gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 908

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 278/513 (54%), Gaps = 13/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           KI HN K    V   +G  + G   D  L +Y++  GR S  + +++   L Y  +E+  
Sbjct: 402 KILHNAKGVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALS---LEYLGRELAP 458

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +      +   +D + + HA+   +  +L L      +L       +   ++ P   +++
Sbjct: 459 ATADG-QLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQVGATGLLADVELPTSILLA 517

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            +E  GI  D+D L+ +  + +  +    +  +D  G +FNL SPKQL ++LF +L  P 
Sbjct: 518 SLERAGIAADRDHLEAMERQFAAAVQQAVKEAHDAVGREFNLGSPKQLQEVLFGELNLPK 577

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               D+ +   +L  R+ +K++ T  + L   I     R+HT
Sbjct: 578 TKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVTV-EGLIKSIAT-DGRIHT 635

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S EPNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 636 TFNQTVAATGRLSSTEPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAH 695

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H  VA+++FGV  + V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 696 LSQDEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 755

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I   EA   +  YF RF G+ +Y+    +  R  GY ET+ GRR +  ++NS     R
Sbjct: 756 LNIDAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGRRRYLPDLNSDNRQRR 815

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM+ VH++L + +L+++MLLQ+HDE+V E+   E    
Sbjct: 816 ETAERMALNAPIQGTAADIVKIAMLRVHRALTEARLSSRMLLQVHDEIVLEIAPGERERV 875

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +I+   M  A    + LR PL V++ V  NW+
Sbjct: 876 EEIVRREMADA----VQLRAPLDVSVGVGQNWE 904



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/254 (39%), Positives = 143/254 (56%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 23  LMLMDGHSLAYRAFFALPAENFTTVTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 78

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E + +YKANR K P+    Q+ L+     A   P   + GFEADD+IAT  
Sbjct: 79  DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAPRFAVDGFEADDVIATLA 138

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QL+S  TT LY T  V E  +   E V +K+G+ P +   
Sbjct: 139 TQAEAAGFEVLIVTGDRDSFQLISDHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPD 198

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ E  +
Sbjct: 199 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 257

Query: 242 LSRKLVMLRTDVPI 255
           L+R+L  +  DV +
Sbjct: 258 LNRRLTEMIRDVEL 271


>gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri]
          Length = 869

 Score =  287 bits (734), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 188/533 (35%), Positives = 294/533 (55%), Gaps = 35/533 (6%)

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513
           +F  +  + K+ ++ K   + L R  I ++  E D+ML  YV +S   +    S+     
Sbjct: 357 QFLNDNKYQKLTYHAKSLIVALARDNIFVQNIEYDMMLAGYVYNSNAKN----SLDTYIN 412

Query: 514 SYTRKEIL-------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI----V 562
            + +K+IL       K  K  IP D I   ++     E ++ I +L    RPK+I     
Sbjct: 413 LFEKKQILTDEFFYGKGVKKQIPADVI---KLGHFIGEKASYIHKL----RPKIIELLKT 465

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +   +Y  ++ P+   +++MEI G+++DQ  L   +  I K +  L   I D++ ++ N
Sbjct: 466 NQQYDLYHNIELPIAFALARMEINGVKVDQYELTTQTLRIEKIVQELNNEINDIAQKEIN 525

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
            +SPKQ+ ++LF     P   K  T Q     + LE+I   ++ II  IL++R+  K+ S
Sbjct: 526 PNSPKQISELLFQNFSLPDRKKGSTAQ-----ETLEEIK-NNHVIIPKILDYRKYQKLYS 579

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741
           TY   +  +I     +VHT Y    T TGRL+S+EPN+QNI I+  + +++R+ F+ S P
Sbjct: 580 TYLKGMEKYIFADG-KVHTIYKQTLTNTGRLSSVEPNMQNISIRDHIQKEVRKIFVVSSP 638

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+S DYSQIELRILAH++K   L   F N+ DIH   A +IF ++ ++++P +RR A
Sbjct: 639 DNILLSCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKDEITPNIRRSA 698

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF IIYGIS F LAT L I  ++A   I  Y+ +FP I  +I+K   F +QNGYV T
Sbjct: 699 KAVNFGIIYGISDFGLATDLNISVAKAKAIINNYYQQFPTIKAFIDKQVEFCKQNGYVTT 758

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           IF R+ +  EIN      R   +R A+N PIQGSAADI + A+ ++ +      L  K++
Sbjct: 759 IFNRKRYVSEINDRNYMQREFGKRIAMNMPIQGSAADIIKIALKNIDQEFLKLNLKAKII 818

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            QIHDEL+FE+P+ E+    +I+   ME +      L V L V++K   +W +
Sbjct: 819 AQIHDELIFEIPQVELIQVQKIVKILMEDST----KLDVKLIVDMKTGLSWYD 867



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 161/300 (53%), Gaps = 17/300 (5%)

Query: 7   LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L+DG+S ++RAFYAT     + +  DG P NA+  F NML K+L+ +   S+     V
Sbjct: 4   VLLIDGNSLLFRAFYATAYNGEMLKSLDGTPTNAVYAFTNMLNKILKANNYYSVV----V 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD     FR+++  DYK  R K P  L+ Q P+V+    ++ IP +E +G+EADD++  
Sbjct: 60  AFDKGKKNFRHDLLVDYKDGRSKTPNELIVQFPIVKEFLDSYQIPYLEQEGYEADDLLGC 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMV 180
              +AEKE F V I S+DKDL QL++  T +    + +  D+     +I KWGI P ++ 
Sbjct: 120 LAMLAEKEDFYVDIFSSDKDLYQLITNKTNILVPRQGDSADVIDEAALIAKWGIKPLQVP 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD  DN+ G+P +G KTA  L++EY ++EN+  N   IK    ++N+L + E+A
Sbjct: 180 DLKGLMGDPSDNLKGVPKVGEKTAIKLIKEYHSIENLYDNIEHIK-GALQQNLLNHKESA 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            L +K+  +  D    I LEH        N   L+ F         + ++    D D  N
Sbjct: 239 LLCKKIATIFCD----INLEHFTFTSFSPNHETLMQFYLKYNMNSFVTKLFNNQDNDIQN 294


>gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
 gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
          Length = 875

 Score =  287 bits (734), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 183/513 (35%), Positives = 287/513 (55%), Gaps = 19/513 (3%)

Query: 465 IGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           IG N+KYD ++V + +GI   + + D M++++ LD   SS  + ++A+K  +Y   +   
Sbjct: 377 IGQNLKYDFRIVANNFGIEPPKNYSDTMILAW-LDDPSSSVGMDNLAKKLYNYETIKFES 435

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             K       +      ++A E++ + L+ +     KL  E +L++ + ++ P I  +  
Sbjct: 436 VVKKGEDFSSVDLQSASKYASEDAWITLKFYKTFTNKL-EESMLNIAKNVEFPFILTLFD 494

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI+++ + L+ +       L +L   IY+L  ++FN++S KQLG +LF  LK P+ 
Sbjct: 495 MESNGIRLNLEKLRALILRNDSALRALTTEIYELCEQRFNINSSKQLGSVLFDYLKLPAK 554

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHT 701
            KTKTG + T    L ++    +P I+ ILE+R+L K++STY + L N  I     RV+T
Sbjct: 555 KKTKTG-YSTDESVLSEL-LDLHPSIEKILEYRELYKLQSTYCEPLLNLAIKDENHRVYT 612

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +    T TGRL+S  PNLQNIP + +L + +R  F       LIS DYSQIELR+LAH 
Sbjct: 613 NFIQTGTATGRLSSKNPNLQNIPARGNLAKDMRAVFEPKDGYSLISLDYSQIELRLLAHF 672

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    L + F+N  DIH   A  IFG    + + Q R  AK+INF +IYG+   +L+ +L
Sbjct: 673 SCDPALIEAFKNGDDIHARTAISIFG----ESNTQNRAIAKSINFGLIYGMGSNKLSNEL 728

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I +  A +YI RYF  F  I ++++  KN  + +G+VET+ GR+ ++D   +    +  
Sbjct: 729 SIDKKSAKEYIDRYFKAFSTIKDFLDSIKNRAKNDGFVETLIGRKRYFDFGGATPMQLA- 787

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           + ER A+N   QGSAADI + AMI V   L D     KMLLQIHDEL+FEV +E   + +
Sbjct: 788 MFEREAVNTKFQGSAADIIKIAMIKVKDLLNDD---AKMLLQIHDELIFEVRDEIAPSFA 844

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +   M+      + L VPL  N  ++ NW +
Sbjct: 845 KNVQELMQTV----VALNVPLVANWGMAKNWGD 873



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 165/292 (56%), Gaps = 17/292 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA   L +   G P   + GF N ++ L Q+   + I   FA+  D
Sbjct: 4   LTIIDTFGFFFRLYYAMSGL-KSQSGKPSGMVHGFANFIYNLKQDFPSDYIV--FAL--D 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++I P+YKANR   P+ L  QLP+     +  G+ ++ ++G+EADDIIA++  
Sbjct: 59  SGGKTFRSQIDPNYKANRVSPPQELKDQLPVCIDMIEKMGLCSLRVEGYEADDIIASFIK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            ++ +   + I++ DKDL QL+     ++   K+E  + +   +K+G+ PE++    AL 
Sbjct: 119 NSKDQDLEIRIVTHDKDLYQLIDDRVSIFSPAKKELYNRDGCYEKYGVYPEQIRDFLALC 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPG+ GIG K A  LL E+G++EN+  N S+++ ++ +  + E  E A +S++L
Sbjct: 179 GDSADNIPGVKGIGEKGAKKLLDEFGSIENLYENLSQVRNERTKNMLFESKENAFISKRL 238

Query: 247 VMLRTDV----------PITIPLEHLI--LEDCNGPRLISFLKALEFTKLIN 286
             L  ++          P + PL  +I  L+D +  RL++ LK+ +  K+++
Sbjct: 239 ATLYDELETPNLQNAIFPTSNPLLKVIDTLKDYSLSRLLATLKSSDEDKILS 290


>gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG]
 gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF]
          Length = 914

 Score =  287 bits (734), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 174/520 (33%), Positives = 284/520 (54%), Gaps = 26/520 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K    V   +G+++ G   D  L +Y++  GR +  + +++   L Y  +E++ 
Sbjct: 407 KVMHDAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALS---LEYLGRELVP 463

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMID 578
           +++S   +   +D + Q   +   +  IL L   L    P++  E LL     ++ P   
Sbjct: 464 AQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGAEGLL---TDIELPTSA 520

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           ++++ME  GI  D++ L+++  + +  +       +   G +FNL SPKQL ++LF  L 
Sbjct: 521 LLARMERAGIAADREHLEEMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGGLN 580

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDN----PIIKNILEWRQLSKIKSTYADSLPNHINK 694
            P   KTKTG + T A  L  +  G      P++  +L  R+ +K++ST  + L   I  
Sbjct: 581 LPKTRKTKTG-YTTDADSLAWL-AGQTEHELPVL--MLRHREQAKLRSTV-EGLIKSIAP 635

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
              R+HT ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQI
Sbjct: 636 -DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQI 694

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR++AH+++   L   F +  D+HR VA  +F V    V  +MRR  K +++ + YG+S
Sbjct: 695 ELRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLS 754

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F L+ QL I   EA   +  YF RF G+ +Y+ +     R  GY  T+ GRR +  ++N
Sbjct: 755 AFGLSQQLGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLN 814

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S     R   ER A+NAPIQG+AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+ 
Sbjct: 815 SDNRQRREAAERMALNAPIQGTAADIVKIAMLGVDRALREAELTSRMLLQVHDEIVLELA 874

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             E     +I+   M  A      LR PL V++ V  +W+
Sbjct: 875 PGEREPVEEILRREMAAAA----QLRAPLTVSVGVGRDWE 910



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 158/307 (51%), Gaps = 12/307 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 27  LMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R E + +YKANR K P+    Q+ L+             ++GFEADDIIAT  
Sbjct: 83  DVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIATLA 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QLVS  TT LY T  V E  +   E V +++G+ P +   
Sbjct: 143 TQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQYPD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ E  +
Sbjct: 203 FAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299
           L+R+L  +  DVP+    E L     +  +L   L  LE     L  R+           
Sbjct: 262 LNRRLTEMVRDVPLDKAPEDLERAAYDRKQLAVLLDTLEIRNPSLRERLLAVDPGAEQEQ 321

Query: 300 EPVVLDI 306
           EPV  D+
Sbjct: 322 EPVTEDV 328


>gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
 gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
          Length = 905

 Score =  287 bits (734), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 155/405 (38%), Positives = 238/405 (58%), Gaps = 8/405 (1%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLG 630
           L+ P+++V++ ME  GI +D D L ++ A+    +++ +++ +D + GE+ NL SPKQL 
Sbjct: 504 LELPIVEVLATMEQAGIAVDLDALHELEADYDAQVVAAQQDAWDAIGGEQVNLGSPKQLQ 563

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            +LF  L  P   KTKTG         +      +P +  +L  R  SK++ST    L  
Sbjct: 564 VVLFETLGLPKTKKTKTGYTTDAEAIADLSEKAPHPFLDALLRHRDASKLRST-VQGLIK 622

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISAD 749
            I     R+HT Y      TGRL+S +PNLQNIPI+T+ G++IRR F+       L+SAD
Sbjct: 623 SIGD-DGRIHTTYQQTIAATGRLSSTDPNLQNIPIRTESGRRIRRVFVVGEGYDCLMSAD 681

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE+R++AH++    L Q F +  D+HR V + +FGV   +V+ +MR   K +++ + 
Sbjct: 682 YSQIEMRVMAHLSGDEGLIQAFNDGEDLHRFVGSRVFGVEPSEVTSEMRAKVKAMSYGLA 741

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+S F L+ QLRI  +EA   +  YF RF G+ +Y+ +  +  R  GY ET+ GRR + 
Sbjct: 742 YGLSAFGLSKQLRISTAEAQRLMDGYFERFGGVRDYLRQIVDDARATGYTETMMGRRRYL 801

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            ++ S     R++ ER A+NAPIQGSAADI ++AM+ V ++L    L +++LLQ+HDEL+
Sbjct: 802 PDLTSDNRQRRDMAERMALNAPIQGSAADIMKKAMLGVDEALRAANLRSRVLLQVHDELI 861

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EV   E     +I+   M  A     +L VPL VN+    +WQ+
Sbjct: 862 VEVGAGERDEVERIVREQMGAAA----DLAVPLDVNVGTGRSWQD 902



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 158/291 (54%), Gaps = 11/291 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G   NA+ GF +ML  LL++       +H AV F
Sbjct: 20  LLLLDGHSLAYRAFFALPAENFSTSTGQHTNAVYGFTSMLINLLRDEEP----THLAVAF 75

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y +YKA R   P     Q+ LV+    A G+  +E+ G+EADDI+AT T
Sbjct: 76  DVSRQTFRSEEYAEYKAGRATTPSEFKGQVSLVKEVLDAMGVTHLEVDGYEADDILATLT 135

Query: 126 YIAEKEGF-AVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMV 180
             A + GF  V + S D+D +QLV    T LY    V E  ++    V +K+ +PPE+  
Sbjct: 136 TQATQAGFDEVLLCSGDRDALQLVRDNVTVLYPVKGVSELTRMTPAAVEEKYSVPPERYS 195

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL G+  DN+PG+PG+G KTAA  + +YG+LE ++ N  +IK K   EN+  + +  
Sbjct: 196 DLAALVGEKSDNLPGVPGVGPKTAAKWIGQYGDLEGLVANVDQIKGKA-GENVRAHLDGV 254

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
             +R+L  L  DVP+ +  + L   D N   +      LEF  L +R+  T
Sbjct: 255 LRNRRLNQLLVDVPLPVTPDDLARHDWNRDEVHRVFDGLEFKVLRDRLFAT 305


>gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 880

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 172/529 (32%), Positives = 287/529 (54%), Gaps = 13/529 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
           S L ++ ++    K+ H  K     LH  G+ + G  +D  +  Y++   R S+D+A +A
Sbjct: 357 SVLARWLQDPEEAKVLHEFKSALKALHNRGLGLEGVVDDTSISGYLIQPDRRSYDLAELA 416

Query: 510 QKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           Q  L  +      +S +  + +   +D       ++++ V+  L      +L   K   +
Sbjct: 417 QVHLKISLAAAAAQSGQLELDLSGDTDEVAATALVQHAAVVHALSKHFEKELAEIKADAL 476

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
              L+ P+  V++QME+TGI +  D + +  A+++K + + +E  +   G + NL SPKQ
Sbjct: 477 LTTLELPVARVLAQMELTGIFVSTDRMDEQLADLTKVIENAQEQAFAAIGHEVNLGSPKQ 536

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCGDNPIIKNILEWRQLSKIKSTYAD 686
           L  +LF +L  P   K K+G + T A  L+ +    G   +++ ++  R+ SK+ +   +
Sbjct: 537 LQTVLFDELGLPKTKKIKSG-YTTDAASLKGLLEKTGHEFLVQ-LMAHRESSKL-AQMVE 593

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKL 745
           +L   +     R+HT Y+     TGR++S  PNLQNIP++++ G+++R  F +S   + L
Sbjct: 594 TLKKSVADDA-RIHTTYAQNIAATGRISSNNPNLQNIPVRSEEGRRVRSIFMVSEGYECL 652

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           +SADYSQIE+RI+AH++    L Q +++  D+HR V A IF V   +V+  MR   K ++
Sbjct: 653 LSADYSQIEMRIMAHLSGDQALIQAYKDGEDLHRFVGARIFNVEPAEVTSAMRSKVKAMS 712

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           + + YG++ F L+ QL I   EA   +K Y+ RF  +  Y++  ++  R +GY  TI GR
Sbjct: 713 YGLAYGLTSFGLSKQLEISVDEARTLMKDYYDRFGAVRAYLDGVRDQARVDGYTATIEGR 772

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  ++ S     R   ER A+N+PIQGSAADI +RAM+ V   L    L ++MLLQ+H
Sbjct: 773 RRYLPDLTSTNRQAREAAERIALNSPIQGSAADIIKRAMLGVSAELASQGLKSRMLLQVH 832

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DELV EV   E     ++++  M  A      L VPL V I V ++W E
Sbjct: 833 DELVLEVAPGEREAVEKLVIEQMGSAA----ELSVPLDVQIGVGSSWYE 877



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 131/255 (51%), Gaps = 17/255 (6%)

Query: 17  YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA-VTFRN 74
           +RAFYA P  +     G   NA+ GF +ML  L+++ +     +H AV FD     TFR 
Sbjct: 3   FRAFYALPAENFSTARGQYTNAVHGFTSMLINLIKDQKP----THVAVAFDVSDDTTFRK 58

Query: 75  EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
             Y +YK  R   P     Q+ L+    +A+GI  I + G+EADD++AT     +  GF 
Sbjct: 59  AEYSEYKGGRNATPAEFAGQIGLIAKVMEAWGIRTIAMPGYEADDVLATLAAQGDAAGFE 118

Query: 135 VTIISTDKDLMQLVSPTT-CLY---DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190
           V ++S D+D  QL++     LY         K+D   + +K+ + P     L AL G++ 
Sbjct: 119 VLLVSGDRDAFQLINDNVFVLYPKQGVSNIPKMDAAAIEEKYFVKPGLYSDLAALVGETA 178

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAETARLSRKLV 247
           DN+PG+PG+G KTAA  +  YG LE IL N   I  K     +EN+    E  + +R+L 
Sbjct: 179 DNLPGVPGVGPKTAAKWINLYGGLEGILENLDSIGGKVGGALKENL----ENVKRNRRLN 234

Query: 248 MLRTDVPITIPLEHL 262
            L TD+ + I L  L
Sbjct: 235 QLLTDLDLPITLADL 249


>gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4]
 gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4]
          Length = 915

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 176/535 (32%), Positives = 296/535 (55%), Gaps = 12/535 (2%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRS 501
           +T T E  + L  +  +    K  H  K+    L   G ++ G   D  L +Y++  G+ 
Sbjct: 383 STATPEDEAALGDWLADASQPKALHEAKWAIHALRGRGWTLGGLTSDTALAAYLVRPGQR 442

Query: 502 SHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPK 559
           S ++  ++ ++L    R E     + S+  D    D++  E A+ ++  +L L   L  +
Sbjct: 443 SFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAEAAETAMLSAQAVLDLAAALDTE 502

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L   +   +   ++ P+   ++Q+E TGI +D   L  + +  +  +     + Y++  +
Sbjct: 503 LESIESKSLLSDMELPLTIELAQIEATGIAVDSAHLHDLQSRFASQVADAANSAYEVIDK 562

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLS 678
           + NL SPKQL  +LF +L  P   KTKT  + T A+ L+ + +   +P ++++L  R  +
Sbjct: 563 QINLGSPKQLQVVLFEELDMPKTKKTKT-GYTTDAEALQGLFDKTGHPFLEHLLAHRDAT 621

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           ++K T  D L   + +   R+HT ++     TGRL+S +PNLQNIP++ D G++IR  F+
Sbjct: 622 RMKVT-VDGLLKAVAE-DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGFV 679

Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
                  L++ADYSQIE+RI+AH++    L + F    D+H  V +  FGV IE+V+P++
Sbjct: 680 VGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPEL 739

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           RR  K +++ + YG+S + LA+QL+I   EA   +  YF RF G+ +Y+       R++G
Sbjct: 740 RRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDG 799

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           Y  T++GRR +  ++NS     R + ERAA+NAPIQG+AADI + AMI+V K+L +  L 
Sbjct: 800 YTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALAEAGLK 859

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++MLLQ+HDELV EV   E+   + ++   M  A    I L VPL V++    +W
Sbjct: 860 SRMLLQVHDELVLEVVASELEEVTALVKDKMATA----IELSVPLDVSVGTGRSW 910



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/293 (36%), Positives = 162/293 (55%), Gaps = 16/293 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  + K H G   NA+ GF +ML  LL++ +     +H A  F
Sbjct: 28  LMLLDGHSLAFRAFYALPAENFKTHSGQATNAVYGFTSMLINLLRDEQP----THLAAAF 83

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR +++P+YKA R K P+    Q+ + +    A GIP +  +GFEADD+IAT T
Sbjct: 84  DVSRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVLGALGIPVMAEEGFEADDVIATLT 143

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  G+ V +++ D+D +QLV+   T LY    V E  +     V +K+ + P +   
Sbjct: 144 TQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGVSELTRFTQTAVEEKYSLTPSQYPD 203

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238
             AL GD  DN+PGIPG+G KTA   ++EYG+L+ ++ N  +++ K     REN+     
Sbjct: 204 FAALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLVDNVDKVRGKVGDSLRENL----A 259

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              L+R+L  +  DVP+    E L+L   +  ++ +    LEF  L +R+  T
Sbjct: 260 NVLLNRQLTEMVRDVPLPYTPEQLVLAPWDREKIHALFDDLEFKVLRDRLFAT 312


>gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 907

 Score =  286 bits (733), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 171/513 (33%), Positives = 278/513 (54%), Gaps = 12/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    VL  +G S+ G   D  L +Y++  GR S D+ +++   L Y  +E+  
Sbjct: 400 KVFHNAKGAMRVLAEHGWSVAGVGMDTALAAYLVKPGRRSFDLDALS---LEYLHRELAP 456

Query: 523 SRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +  +   +   +D   + E  +  +  IL L      +L       +   ++ P   +++
Sbjct: 457 AAAADGQLAFGADEGAEAEVLMVQARAILDLGETFESRLADVGAADLLRDMELPTSALLA 516

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI  D++ L+ +    +  +    +  +  +G +FNL SPKQL ++LF +L  P 
Sbjct: 517 RMERHGIAADREHLQAMEQMFAGAVQQAVKEAHAAAGREFNLGSPKQLQEVLFGELNLPK 576

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               DN +   +L  R+ +K++ T  + L   I     R+HT
Sbjct: 577 TKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 634

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 635 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAH 694

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H   AA++F V    V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 695 LSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 754

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I  +EA   +  YF RF G+ +Y+ +  +  R  GY  T+FGRR +  ++NS     R
Sbjct: 755 LNIEAAEARGLMDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRYLPDLNSDNRQRR 814

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM++V K+L +  L ++MLLQ+HDE+V E+   E   A
Sbjct: 815 EAAERMALNAPIQGTAADIVKIAMLNVDKALREADLKSRMLLQVHDEIVLEIAPGERAAA 874

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +++   M  A    + LRVPL V++    +W+
Sbjct: 875 EELVRREMANA----VQLRVPLGVSVGAGPDWE 903



 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 102/258 (39%), Positives = 150/258 (58%), Gaps = 12/258 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 19  LMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 74

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E + +YKANR K P+    Q+ L+     +  +P   ++GFEADD+IAT  
Sbjct: 75  DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDSMHVPRFAVEGFEADDVIATLA 134

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EGF V I++ D+D  QLVS  TT LY T  V E  +   E V +K+G+ P +   
Sbjct: 135 TEAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPD 194

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++     +K K   +N+ ++ E+ +
Sbjct: 195 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKGKA-GQNLRDHLESVK 253

Query: 242 LSRKLVML--RTDVPITI 257
           L+R+L  L  R ++P T+
Sbjct: 254 LNRRLTELERRVELPRTV 271


>gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
 gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
          Length = 912

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 179/511 (35%), Positives = 290/511 (56%), Gaps = 12/511 (2%)

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK--EILKS 523
           H  K     L   G ++ G   D  L +Y++  G+ S ++  ++ ++L    +  E  + 
Sbjct: 404 HEAKRAMHALRGRGWTLAGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEESGQQ 463

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           + S +  +  +D++  E  I  S  +L L   L  +L   +   +   ++ P+++V++ +
Sbjct: 464 QLSLLDDEDAADAEAAEGEILRSRAVLDLAAALDTELADIEATGLLADMELPLLEVLANL 523

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TGI +D   L  + +  +  +    E  Y + G++ NL SPKQL  +LF +L  P   
Sbjct: 524 ESTGIAVDTTHLHDLQSAFAARVAEAAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTK 583

Query: 644 KTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           KTKT  + T A  L+ +     +P ++++LE R  +++K T  D L   + +   R+HT 
Sbjct: 584 KTKT-GYTTDADALQSLFEKTQHPFLEHLLEHRDATRLKVT-VDGLLKTVAE-DGRIHTT 640

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761
           ++     TGRL+S EPNLQNIP++TD G++IR  F+     + L++ADYSQIE+RI+AH+
Sbjct: 641 FNQTVAATGRLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYETLLTADYSQIEMRIMAHL 700

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    L + F    D+H  V +  FGV IE+V+P++RR  K +++ + YG+S F LA QL
Sbjct: 701 SGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQL 760

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
           +I   EA   +  YF RF G+ +Y+ +     R+ GY ET+FGRR +  ++NS     R 
Sbjct: 761 KISTEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRYLPDLNSDNRQRRE 820

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           + ERAA+NAPIQG+AADI + AMI V ++L +  LA++MLLQ+HDELV EV   E     
Sbjct: 821 VAERAALNAPIQGTAADIIKVAMIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVE 880

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           Q++   M  A    I+L VPL+V++    +W
Sbjct: 881 QLVREKMAAA----IDLSVPLEVSVGTGRSW 907



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 161/296 (54%), Gaps = 22/296 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  + K   G   NA+ GF +ML  LL++ +     +H A  F
Sbjct: 25  LMLLDGHSLAYRAFFALPAENFKTQSGQATNAVYGFTSMLINLLRDEQP----THVAAAF 80

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E +P+YKANR K P+    Q+ + +    A GIP + I+GFEADD+IAT T
Sbjct: 81  DVSRQTFRAEAFPEYKANRSKTPDEFKGQVEITKDVLAAMGIPVMAIEGFEADDVIATLT 140

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
             A   G+ V +++ D+D +QLV+       P   + D  +     +E   +K+G+ P++
Sbjct: 141 TQATALGYRVLVVTGDRDSLQLVTEDVTVLYPRKGVSDLTRFTPAAVE---EKYGLTPQQ 197

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILE 235
                AL GD  DN+PGIPG+G KTAA  ++EYG+LEN++ +  +++ K     R N+  
Sbjct: 198 YPDYAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLENLVNDVDKVRGKVGDALRANV-- 255

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              +  L+R L  +  DV +    + L L   +  R+ +    LEF  L +R+  T
Sbjct: 256 --NSVLLNRHLTEMVRDVAVPYTPDQLALAPWDRERIHALFDDLEFKVLRDRLFAT 309


>gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 914

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 174/520 (33%), Positives = 284/520 (54%), Gaps = 26/520 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K    V   +G+++ G   D  L +Y++  GR +  + +++   L Y  +E++ 
Sbjct: 407 KVMHDAKGLMRVFGEHGMTVAGVAMDTALSAYLVKPGRRTFALDALS---LEYLGRELVP 463

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMID 578
           +++S   +   +D + Q   +   +  IL L   L    P++  E LL     ++ P   
Sbjct: 464 AQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGAEGLL---TDIELPTSA 520

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           ++++ME  GI  D+  L+++  + +  +       +   G +FNL SPKQL ++LF +L 
Sbjct: 521 LLARMERAGIAADRAHLEEMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGELN 580

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDN----PIIKNILEWRQLSKIKSTYADSLPNHINK 694
            P   KTKTG + T A  L  +  G      P++  +L  R+ +K++ST  + L   I  
Sbjct: 581 LPKTRKTKTG-YTTDADSLAWL-AGQTEHELPVL--MLRHREQAKLRSTV-EGLIKSIAP 635

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
              R+HT ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQI
Sbjct: 636 -DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQI 694

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR++AH+++   L   F +  D+HR VA  +F V    V  +MRR  K +++ + YG+S
Sbjct: 695 ELRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPAAVDAEMRRKIKAMSYGLAYGLS 754

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F L+ QL I   EA   +  YF RF G+ +Y+ +     R  GY  T+ GRR +  ++N
Sbjct: 755 AFGLSQQLGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLN 814

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S     R   ER A+NAPIQG+AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+ 
Sbjct: 815 SDNRQRREAAERMALNAPIQGTAADIVKIAMLGVDRALREAELTSRMLLQVHDEIVLELA 874

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             E     +I+   M  A      LR PL V++ V  +W+
Sbjct: 875 PGEREPVEEILRREMAAAA----QLRAPLTVSVGVGRDWE 910



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 158/307 (51%), Gaps = 12/307 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 27  LMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R E + +YKANR K P+    Q+ L+             ++GFEADDIIAT  
Sbjct: 83  DVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIATLA 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QLVS  TT LY T  V E  +   E V +++G+ P +   
Sbjct: 143 TQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQYPD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ E  +
Sbjct: 203 FAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299
           L+R+L  +  DVP+    E L     +  +L   L  LE     L  R+           
Sbjct: 262 LNRRLTEMVRDVPLDKAPEDLERAAYDRKQLAVLLDTLEIRNPSLRERLLAVDPGAEQEQ 321

Query: 300 EPVVLDI 306
           EPV  D+
Sbjct: 322 EPVTEDV 328


>gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
 gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
          Length = 951

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 167/538 (31%), Positives = 288/538 (53%), Gaps = 14/538 (2%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSH 503
           +   + + L +F + EHF  I H  K    +L   G+ M     D  L  Y+      + 
Sbjct: 415 MASSVQTALDRFLKAEHFRTIVHGYKELLHLLSAAGLGMALPMFDTKLGGYLAQPDFHAD 474

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPID-KISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           ++   A+ +L     +  +  +  +  D + ++  + E  + +  VI +L + L P +  
Sbjct: 475 NLNQAAEHFLDIHVVDAEQPAQGVLDFDDEHTEEDLNERRVHDLAVIRELAVTLGPVIDE 534

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +   +   ++ P+  V+  ME +G +ID+  L  +    + +    +E  +  +G + N
Sbjct: 535 RRQYWLMRAIELPVSRVLHGMEQSGAKIDRSRLTDMRDRFAADARQAQEMAWQYAGGEIN 594

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQ 676
           L SPKQL  +LF  +      +TK G + T A  L+ +      N   N  +  +L  R+
Sbjct: 595 LQSPKQLQKVLFVDMGLKPTKRTKNGSYTTNAAALQNLYIHSVDNEQANGFLGALLRHRE 654

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            +K+K     +L +  NK  +R+HT +      TGRL+S++PNLQNIP +  +G++IR  
Sbjct: 655 TNKLKQI-VQTLIDATNKADERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAVGREIRSV 713

Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           F+     + L+S DYSQ+ELRI+A ++    L + F +  D H+ VA+ ++GV +++++ 
Sbjct: 714 FVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYGVPVDQITG 773

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R H K +++ + YG+S + LA QL I + EA     RYF  F  +H+Y+E      R+
Sbjct: 774 DQRSHVKAMSYGLAYGLSTYGLAQQLNIAQREAEALKNRYFDTFGKVHDYLESLVATARE 833

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GY ETIFGRR ++  + S     R+  ERAA+NAPIQGSAADI + AMI   ++L++  
Sbjct: 834 KGYTETIFGRRRYFPALRSTNRMARDAAERAALNAPIQGSAADIMKIAMIRAGQALDEAG 893

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           + ++++LQIHDELV E+   E    +++I ++ME A    ++L VPL V+  + ++WQ
Sbjct: 894 VKSRIILQIHDELVVEIAPGESEQVTELIRNAMEHA----VDLAVPLDVSCGIGSDWQ 947



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 153/285 (53%), Gaps = 20/285 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAFYA P+ +     G   NA+ GF  ML ++++  + +    H  V F
Sbjct: 9   LLVVDGHSLAFRAFYALPVENFSTAAGQATNAVWGFATMLSQVIEAEKPD----HLGVAF 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRN++ P YK  R   PE LL QLPL++   +A G+  IE QG+E DDIIAT  
Sbjct: 65  DMKGGTFRNDMLPQYKGTREAAPEELLTQLPLIQRMLKALGVTYIEKQGYEGDDIIATLA 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +  G+   ++S D+D  QLV    T LY        D++H     ++ K+ + P + 
Sbjct: 125 TMGDDAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIVDKYKVTPAQY 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236
             L AL G++ DNIPG+PG+G   AA  + +YG+L+ I  +A  +  KK    R NI   
Sbjct: 183 PDLAALRGETADNIPGVPGVGDGYAAKWINQYGSLDAICEHADEVTGKKGEALRANI--- 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
            +  +L+RK+  L  DV + + +E L     +  ++ +  K LEF
Sbjct: 240 -DQVKLNRKVNALVRDVDLGVDIEDLTFGSVDVAQIDALFKELEF 283


>gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 842

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/445 (37%), Positives = 267/445 (60%), Gaps = 9/445 (2%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           IG+NIK       + G+  R + DIML  YVL +  SS D+ +I    L    ++  +  
Sbjct: 402 IGYNIK----EYLKKGMGYRQYFDIMLAWYVLGT-ESSQDLENIIFSELGVNLEKFEEQF 456

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K   P ++IS+ +  +   E +  + +L  +L  +L  E L +V+E L+  ++ V++ ME
Sbjct: 457 KKRKP-EEISEEEKTQFLWERAFYVKELKEILENRLKSEDLTNVFENLENKLVPVLASME 515

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           + GI+I+++  +    E+ +N+  LE  IY L GE FN+ SPKQL +ILF K+      K
Sbjct: 516 MYGIKINKEYFENYKKELQENIEKLEGEIYSLLGEAFNIGSPKQLAEILFDKMGIEPVKK 575

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTG + T  + LE++      I + +LE+R  +K+ STY + LP   +++  R+HT ++
Sbjct: 576 TKTG-YSTDVEVLEELALRGIEIAEKLLEYRGFTKLLSTYVEPLPKLADEK-DRIHTTFN 633

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
              T TGRL+S  PN+QNIP++TD G KIR+ FIS     L+S DYSQIELR+LA ++K 
Sbjct: 634 QNGTSTGRLSSTNPNIQNIPVRTDEGIKIRKGFISEEGWSLVSFDYSQIELRVLAELSKD 693

Query: 765 TPLYQVFENSLDIHRMVAAEIF-GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             L   ++   D+H + A +IF   + E+V+ + R  AK INFSI+YG +PF L+ +L+I
Sbjct: 694 ENLVLAYKKDKDLHDLTARKIFFKADEEQVTREERSIAKVINFSILYGKTPFGLSKELKI 753

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           P ++A+ YIK YF ++P +  ++E      + NG+VET++G R +   INS   +++   
Sbjct: 754 PVADASLYIKTYFEQYPKVKRFLENILENAKLNGFVETLYGTRRYIKGINSSNKNLQAQA 813

Query: 884 ERAAINAPIQGSAADITRRAMISVH 908
            R A+N  +QG+AA+I ++ MI ++
Sbjct: 814 NRMAVNTVVQGTAANIIKKVMIKLY 838



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 147/287 (51%), Gaps = 17/287 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D S+ +YR  +A  +  R   G+   A  GF N L  ++    KE    +     D  
Sbjct: 6   ILDTSAVMYRTHFAL-MGMRNSKGMATGATYGFVNTLEGII----KEFNPDYLVACLDIK 60

Query: 69  AVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY-TY 126
                R+E    YKA+R  +P+ L+ Q  ++      + IP  +I G+EADD+IAT  T 
Sbjct: 61  RSELKRSEELETYKAHRESMPDDLVAQQDMIMSVLDGYKIPKYKINGYEADDVIATLATK 120

Query: 127 IAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------EHVIKKWGIPPE 177
            +E  +E   V I++ DKDL QLV+    +    K +K  +         VI+  G+ P+
Sbjct: 121 FSEDKEEEIEVYIVTGDKDLAQLVNGKINIALLGKGDKKSLFRYIRNDNDVIEYLGVTPD 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K+  L  L GDS D IPG+ GIG KT   L+ +YGNLE++  N   IK  KR+E ++E  
Sbjct: 181 KIPDLFGLMGDSSDGIPGVSGIGPKTGVELILKYGNLESLYENIDEIKG-KRKEKLIEDK 239

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           E A LSRKL  +  ++ +    + L +E  +  +L+S  + +EF K 
Sbjct: 240 EKAFLSRKLATVHRNIEMEYDKDKLKMESKDTEKLLSIYRTMEFKKF 286


>gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
 gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
          Length = 816

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 177/491 (36%), Positives = 273/491 (55%), Gaps = 43/491 (8%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           FED+ +++Y L++  +  D+  +   +L  T  E    R                     
Sbjct: 361 FEDLKVIAYPLNTLNT--DLEYLFSHYLGETSPEAFHKR--------------------- 397

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
              + +L+  LR  +  EK+L +Y ++DKP+I+V+  ME  GI +D + L  +S +IS  
Sbjct: 398 ---LNELYDKLRNAMFTEKVLTLYYKVDKPLINVIKHMEKNGISLDVEQLLSLSTQISGK 454

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L  +E  I+D +G+ F+L SPKQLG +LF +++ P   K KTG   T  + L  ++    
Sbjct: 455 LEEIENKIFDTAGKTFSLQSPKQLGKVLFEEMQIPVQKKLKTGLSSTDNEVLTSLSSQGY 514

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHIN--KRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            I   +L WR   K+K+ Y D L   +N  ++  R+ T YS   T+TGRL+S  PNLQNI
Sbjct: 515 EIADYLLSWRHYIKLKTAYIDPLLLKVNPSEKKHRISTTYSTTLTLTGRLSSSNPNLQNI 574

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P +    + IR+ F +      + ADYSQIELRILA+IA +  L     +  D+H + A+
Sbjct: 575 PRE----KNIRKIFTAKEGHYFLCADYSQIELRILAYIANVERLKCALASGTDLHTLTAS 630

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           +IF    +K++P +R  AK +NF I+YGI+ F L+ QL I + EAA YI++YF  +P I 
Sbjct: 631 QIFKT--DKITPNLRNKAKAVNFGIVYGITNFGLSKQLAISKEEAASYIQKYFDEYPEIK 688

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y+   +N  +++ YV+TI  R+     INS   +I  I ER+AINAPIQG+AADI R A
Sbjct: 689 SYMNHIRNQAKKDTYVKTIMNRKCPIQNINSDNRAISLIAERSAINAPIQGTAADIIRAA 748

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+   +  ++ +L + M++Q+HDELVFE+  + I   ++ I   ME+         +PL 
Sbjct: 749 MV---RMAQEKELLSHMVMQVHDELVFELETDAIQQLAKKIKQIMEEPH------GIPLL 799

Query: 964 VNIKVSNNWQE 974
           V +K   N  E
Sbjct: 800 VELKHGPNLGE 810



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/285 (38%), Positives = 163/285 (57%), Gaps = 9/285 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D  +F++ A++A P L+  H+ LPV A+ GF N+L K L+         +  V  D
Sbjct: 5   LMIIDAYNFLFSAYFALPNLT--HNELPVGAVYGFLNILLKHLRTK-----PEYLVVALD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR  IY +YKANRP +P  L PQ  L+R       +  +EI+GFEADDIIAT   
Sbjct: 58  NGKSTFRETIYNNYKANRPPVPGNLTPQFALLRECVDVLNLNPLEIEGFEADDIIATLVR 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              K    + I+STDKDLMQLVS    + + +K   I +  V +K+G+ P +M    +L 
Sbjct: 118 KFSKSDLKIKILSTDKDLMQLVSENVHVINPIKNRIIGVNEVKEKFGVFPTQMTDFLSLV 177

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+PGIG KTAA LL  +G ++N  +N   +   + +E++L +     LSRKL
Sbjct: 178 GDTSDNIPGVPGIGVKTAAKLLNTFGAIDNFRLN--EVSPARIKESLLRHHGQLTLSRKL 235

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           V L  D+ I   L+ +  +  +G +L++FL+   F  LI ++  +
Sbjct: 236 VSLVDDINIQCSLDCIRYQQQDGTKLLAFLEKYGFKNLIPKLVKS 280


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 178/518 (34%), Positives = 292/518 (56%), Gaps = 22/518 (4%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517
           HF+ IGHN+KYD K++ + + +++ + + D M+++++ + S R + D   +A +  +Y  
Sbjct: 378 HFV-IGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  K       +   +  ++A E++ + L+ +L     L    LL + +  +   I
Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLET-PLLELAKNCEFDFI 493

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++  ME  GI++D + L+ +  +    + +L E IY L  ++FNL+SPKQ+GDILF KL
Sbjct: 494 KIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKL 553

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696
           K PSG K KTG   +T + +  I    +P+I  IL++R+L+K+ STY + L    +  + 
Sbjct: 554 KLPSGKKGKTGY--STDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKN 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+++ +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR
Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    
Sbjct: 672 ILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L+I  + A  YI++YF  F  I +Y EK KN  +QNG++ T+ GR+ ++D  N+  
Sbjct: 728 LSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKP 787

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             I  + ER +IN+ +QGSAAD+ + AM+ ++K L + K   K++LQIHDEL+FEV ++ 
Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +     ME      + L+V LK +  ++ NW +
Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 164/331 (49%), Gaps = 26/331 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L +VD   F +R +YA     +   G     I+GF N ++ L    + E  + +     D
Sbjct: 4   LTIVDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIVFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++  
Sbjct: 59  SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGYEADDIIASFVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    AL
Sbjct: 119 TCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS+K
Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           L  L  ++ +       T P E  +L      +++  L+  E   L+ ++    D    N
Sbjct: 239 LASLYDNLEVQNLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292

Query: 299 I---EPVVLDINTTENKGIAIETEIDRDTTI 326
           +     +V D    ENK   I   +D+++ I
Sbjct: 293 LGFKATLVQD----ENKLFEILNTLDKESII 319


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 178/518 (34%), Positives = 292/518 (56%), Gaps = 22/518 (4%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517
           HF+ IGHN+KYD K++ + + +++ + + D M+++++ + S R + D   +A +  +Y  
Sbjct: 378 HFV-IGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  K       +   +  ++A E++ + L+ +L     L    LL + +  +   I
Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLET-PLLELAKNCEFDFI 493

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++  ME  GI++D + L+ +  +    + +L E IY L  ++FNL+SPKQ+GDILF KL
Sbjct: 494 KIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKL 553

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696
           K PSG K KTG   +T + +  I    +P+I  IL++R+L+K+ STY + L    +  + 
Sbjct: 554 KLPSGKKGKTGY--STDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKN 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+++ +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR
Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    
Sbjct: 672 ILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L+I  + A  YI++YF  F  I +Y EK KN  +QNG++ T+ GR+ ++D  N+  
Sbjct: 728 LSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKP 787

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             I  + ER +IN+ +QGSAAD+ + AM+ ++K L + K   K++LQIHDEL+FEV ++ 
Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +     ME      + L+V LK +  ++ NW +
Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 164/331 (49%), Gaps = 26/331 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIVFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++  
Sbjct: 59  SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGYEADDIIASFVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    AL
Sbjct: 119 TCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS+K
Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           L  L  ++ +       T P E  +L      +++  L+  E   L+ ++    D    N
Sbjct: 239 LASLYDNLEVQNLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292

Query: 299 I---EPVVLDINTTENKGIAIETEIDRDTTI 326
           +     +V D    ENK   I   +D+++ I
Sbjct: 293 LGFKATLVQD----ENKLFEILNTLDKESII 319


>gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1]
 gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1]
          Length = 949

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 167/536 (31%), Positives = 291/536 (54%), Gaps = 16/536 (2%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIAS 507
           I + L+   +  H   + H  K  + +L   GI++     D  L  Y++     +  +  
Sbjct: 415 IANELQHMLDGYHRSMVVHGYKEQQHLLESVGITLPTPLFDTKLAGYLVHPDFHAESLEQ 474

Query: 508 IAQKWLS-YTRKEILKSRKSSIPIDKI-SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            A  +L  +  ++  ++ + ++ +D +   S  Q   ++    I+ +   +   L+ ++ 
Sbjct: 475 AAGHFLDLHFEEQSSEATQGTLDLDDMDGSSNTQADELQRHAAIVDMLANVLADLLDQRA 534

Query: 566 -LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              + + ++ P+  V+  ME  G Q+D   L ++  + + +    +E  ++ +GE+ NL 
Sbjct: 535 QFGLLKSIELPVSKVLYGMEHAGAQVDMIRLTEMRDQFAADARQAQEIAWESAGERVNLQ 594

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLS 678
           SPKQL  ILF  +      KTK+G + T A  L+ +      N   N  +  +L  R+ +
Sbjct: 595 SPKQLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETN 654

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+K     +L +  N R  R+HT +      TGRL+S++PNLQNIP +   G++IR AF+
Sbjct: 655 KLKQI-VQTLIDATNPRDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRSAFV 713

Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
                + L+S+DYSQ+ELRI+A ++    L + F +  D H+ VA+ ++G+ +E+++   
Sbjct: 714 PGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQ 773

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R H K +++ + YG+S + LA QL+I   EA     +YF  F  +HEY+E   +  R+ G
Sbjct: 774 RSHVKAMSYGLAYGLSTYGLAQQLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKG 833

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           Y ETI+GRR ++  + SP  ++R+  ERAA+NAPIQGSAADI + AMI    SL D  L 
Sbjct: 834 YTETIYGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRAADSLRDACLK 893

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           ++++LQIHDELV E+   E   A+ ++ ++ME A    + + VPL  +  + ++WQ
Sbjct: 894 SRIILQIHDELVVEIAPGEAEQATALVRNAMEHA----VTMAVPLDASTGIGSDWQ 945



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 158/297 (53%), Gaps = 17/297 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++     +    H AV F
Sbjct: 16  LLVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDTEHPD----HLAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRN + P YK  R   PE LL QLPL++    A G+  IE  G+E DD+I T  
Sbjct: 72  DVKGGTFRNTMLPQYKGTRDAAPEDLLSQLPLIQRMLSALGVTYIEQPGYEGDDVIGTLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDT--VKEEK-IDIEHVIKKWGIPPEKMVC 181
            + +K G+   ++S D+D  QL++   T LY     K+ K +  E V++K+ + PE+   
Sbjct: 132 TMGDKAGYRTLVLSGDRDAFQLINDNITVLYPGHHFKDLKHMTAEAVVEKYHVTPEQYPD 191

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAE 238
           L AL G++ DNIPG+PG+G   AA  + +YG L+ I+ +A  I  KK    RENI    E
Sbjct: 192 LAALRGETADNIPGVPGVGDGFAAKWINQYGGLDQIIEHADEITGKKGEALRENI----E 247

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDC 294
             +L+R +  L  D+ + + L+ L     +  RL      LEF  +  NRV  T++ 
Sbjct: 248 QVKLNRSVNALVRDLELDVTLDDLTFGTVDTARLNDLFSKLEFGIRTRNRVLKTFNA 304


>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
 gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
          Length = 887

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/403 (39%), Positives = 233/403 (57%), Gaps = 6/403 (1%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           L+ P+I V+  ME  GI +D D       ++S  L  L  +I   +GE FN+ S +QL  
Sbjct: 489 LEIPLIPVLVSMEQAGIGVDLDAFAGFLDDVSTQLDELTRSIIRHAGEPFNIRSSQQLAA 548

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL    G KT TGQ  T  Q LE I    +PI+++ILE+R L K++STY + LP  
Sbjct: 549 ILFDKLDIKEGNKTATGQRSTANQVLEAIRS-RHPIVEDILEYRMLEKLRSTYLEPLPKL 607

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           + + + R+HT ++  +T TGRL+S +PNLQNIPI+   G ++R  FI+ P   L +ADYS
Sbjct: 608 VGEDS-RLHTHFNQLATATGRLSSSQPNLQNIPIRGKHGPRMRACFIAGPGAMLAAADYS 666

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAH +    L   F N  DIH   AA +     + V    RR+AKTINF +IYG
Sbjct: 667 QIELRVLAHFSGDPALIDAFRNDEDIHTRTAALLTDKQPQDVLADERRNAKTINFGLIYG 726

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           + P +LA +L I  ++A ++I+RYF +   +  Y +        +G+V T+ GRR    E
Sbjct: 727 MGPQKLARELDITVNQAKEFIERYFDKLATLKAYYDTIVKDAESHGFVTTLAGRRRLLPE 786

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           ++S  + + +   R A+N  IQGSAADI + AM++ HK  +   L   ++LQ+HDEL+ E
Sbjct: 787 LHSRNTQLVSQARRQAVNTVIQGSAADIIKMAMVAAHKDKDLAALGAHVILQVHDELIIE 846

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            PE  I  A + +   M+       +L VPLKV++ +   W E
Sbjct: 847 APEASIRPAGERLKTIMQSVA----DLAVPLKVDLGLGRTWAE 885



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 144/280 (51%), Gaps = 10/280 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+DG++  YRAFYA   L+R  DG P NAI    N   ++L N  ++    + A + D
Sbjct: 14  VYLIDGTALFYRAFYARTDLARA-DGFPTNAI----NTTLRVLLNMLRDENPRYVAFMMD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+++Y  YKA RP +PE L  Q+  VR   +  G+  +   G EADD I     
Sbjct: 69  GKGPTFRHQLYDRYKAQRPAMPEPLAMQIEPVRRGVELLGVRLLVSDGVEADDCICALAK 128

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEK-IDIEHVIKKWGIPPEKMVCLQA 184
             ++E   V ++++DKDL Q +     + +   K EK I +E   ++ G+ P +    QA
Sbjct: 129 RYKQE-RPVVVVASDKDLKQCLDHNVVILNQAGKTEKIITLESFREEEGMEPSQWPDFQA 187

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + GDS DNIPGIP +G  TA  +++    LE +  N + +   K RE +    E   L R
Sbjct: 188 IIGDSADNIPGIPKVGPVTARKIMETCPTLEALRDNCAALP-AKLREKVEPELENVFLYR 246

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           +L  ++TD     PL+H  L+  +   L +FL   E   L
Sbjct: 247 ELTRMKTDC-CDQPLDHFALQPMDLDGLRAFLDEYELRGL 285


>gi|255017642|ref|ZP_05289768.1| DNA polymerase I [Listeria monocytogenes FSL F2-515]
          Length = 316

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 147/312 (47%), Positives = 200/312 (64%), Gaps = 5/312 (1%)

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQ
Sbjct: 5   SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 64

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH  
Sbjct: 65  NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 124

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  +P
Sbjct: 125 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYP 184

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI 
Sbjct: 185 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 244

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L V
Sbjct: 245 KKAMILMSERLVSEKLKAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 300

Query: 961 PLKVNIKVSNNW 972
           PLKV+    + W
Sbjct: 301 PLKVDSAFGDTW 312


>gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505]
 gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505]
          Length = 946

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 177/517 (34%), Positives = 270/517 (52%), Gaps = 24/517 (4%)

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            L   G+++ G   D  L  Y+    + S+D+ ++ Q+WL      + +           
Sbjct: 434 ALSARGLTLDGVIADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVNEGSAGGDGGSGE 493

Query: 534 SDSQVQEHAIENSNVI--------------LQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           S S     A+ +   +              L L  +L  ++       ++  L+ P+   
Sbjct: 494 SQSAFDLEALTSQEAVPPSHLASARRAAALLPLQAVLDEQMAARDAAGLFTDLEMPVAAT 553

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ ME  GI +D  +L     E+   +    E  Y  +G + NLSSPKQL  +LF +LK 
Sbjct: 554 LTVMEDAGIAVDDAVLHARQTELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKM 613

Query: 640 PSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
           P   KTKTG + T A  L  +     +P ++++LE R   K++ T  + L   I     R
Sbjct: 614 PKTRKTKTG-YTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQTV-EGLRKAIQA-DGR 670

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRI 757
           +HT +      TGRL+S +PNLQNIP + + G +IR AF +    + L++ADYSQIE+RI
Sbjct: 671 IHTTFQQTIAATGRLSSTDPNLQNIPARHEEGMRIREAFTVGEGYECLMTADYSQIEMRI 730

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH++    L + F +  D+HR VAA + G+ +E V+ Q R H K +++ + YG+S F L
Sbjct: 731 MAHLSADQALIEAFRSGEDLHRYVAALVHGIEVEDVTAQQRSHVKAMSYGLAYGLSTFGL 790

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A QL I  +EAAD    YF RF  +H+Y+E      R++GY ET+FGRR +  ++ S   
Sbjct: 791 ARQLGIDNAEAADLRNAYFARFGKVHDYLESVVEQARRDGYTETMFGRRRYLPDLTSDNR 850

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             R + ERAA+NAPIQGSAADI ++AMI V  +L +  L +++LLQIHDEL+ EV   E 
Sbjct: 851 QRREMAERAALNAPIQGSAADIVKKAMIDVDSALREQALTSRILLQIHDELLIEVAPGEA 910

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                ++   M  A      L VPL V +     W+E
Sbjct: 911 EAVENLLKEQMGGAA----ELSVPLDVAVGRGRTWRE 943



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 156/288 (54%), Gaps = 11/288 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P+ +     G   NA+ GF +M   LL + R     +H AV F
Sbjct: 25  LLLIDGHSMAFRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLDSERP----THVAVAF 80

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR E Y +YK  R + P+  L Q+ L++   +A G+ A+   G+EADDI+AT  
Sbjct: 81  DLPGGTFRTEEYAEYKGTRDETPQPFLGQVELIQEVLEAMGVTALTAPGYEADDILATLA 140

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+ EG  V I S D+D  Q V+    +   VK      ++  + V +++G+ PE+   
Sbjct: 141 ASAQAEGMEVLICSGDRDSFQTVTERCTVLYPVKGVSTLRRMTPQEVEERYGVTPERYPH 200

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G++ DN+PG+PG+G KTAA  L  Y  L+ ++ +A +IK K   +++ ++ +   
Sbjct: 201 LAALVGETSDNLPGVPGVGPKTAAKWLNLYDGLDGVIAHADQIKGKA-GQSLRDHLDDVV 259

Query: 242 LSRKLVMLRTDVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +R+L  L TD+ + I P   L L   +   L    ++LEF  L  R 
Sbjct: 260 RNRRLNRLLTDLDLGIEPRTDLRLTGADRAGLARVFESLEFRTLHQRA 307


>gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1]
          Length = 912

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 166/516 (32%), Positives = 282/516 (54%), Gaps = 17/516 (3%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K    V    G ++ G   D  L +Y++  GR S  + +++ ++L         
Sbjct: 404 KVMHDAKRVMRVFDEQGWAVAGAAMDTALAAYLVKPGRRSFALDALSVEYLGRELSPAAA 463

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +    +     +D Q ++ A+   +  IL L      +L     + +   ++ P+  +++
Sbjct: 464 AESGQLAFG--ADEQAEQDALMIQARTILDLGEAFGRRLAEVGAVELLRDVELPISALLA 521

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI  D+D L ++    +  +    +  +D  G +FNL SPKQL ++ F +L  P 
Sbjct: 522 RMEKAGIAADRDWLDRMDQRFAGAVQQAVKEAHDAVGHEFNLGSPKQLQEVFFGELGLPK 581

Query: 642 GAKTKTGQWKTTAQDLEQINCGDN---PIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
             K KTG + T A  L  +    +   P+I  +L  R+ ++++ST  + L   I     R
Sbjct: 582 TKKIKTG-YTTDADALAWLATQTDHELPVI--MLRHREQARLRSTV-EGLIKAIAP-GGR 636

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRI 757
           +HT ++     TGRL+S +PNLQN+ ++T+ G+ IRR F+     + L++ADYSQIELR+
Sbjct: 637 IHTTFNQTVAATGRLSSTDPNLQNVHVRTEEGRAIRRGFVVGEGFESLLTADYSQIELRV 696

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH+++   L + F +  D+H  VA+++FGV   +V P+MRR  K +++ + YG+S F L
Sbjct: 697 MAHLSEDEGLIEAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAMSYGLAYGLSAFGL 756

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           + QL I   EA   +  +F RF G+ +Y+++  +  R  GY ET+ GRR +  ++NS   
Sbjct: 757 SQQLGITPDEARKLMDTFFERFGGVRDYLQRVVDEARATGYTETMLGRRRYLPDLNSDNR 816

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             R + ER A+NAPIQG+AADI + AM+ V ++L   KL+++MLLQ+HDE+V EV   E 
Sbjct: 817 QRREMAERMALNAPIQGTAADIVKIAMLRVDEALTKEKLSSRMLLQVHDEIVVEVAPGER 876

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                ++   M  A     +LR PL V++    +W+
Sbjct: 877 EQVEALVRREMAGA----FHLRAPLDVSVGAGTDWE 908



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 150/281 (53%), Gaps = 10/281 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  YRAF+A P  +     G   NAI GF +ML   L++ +     +H AV 
Sbjct: 23  RLLLLDGHSLAYRAFFALPAENFNTTTGQTTNAIYGFTSMLVNTLRDEQP----THLAVA 78

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    T+R+E + +YKANR K P+    Q+ L+     A  I    + GFEADDIIAT 
Sbjct: 79  FDVSRKTWRSEQFTEYKANRSKAPDEFKGQVELIGEMLDAMSITRFAVDGFEADDIIATL 138

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMV 180
              AE EGF V I++ D+D  QLVS   T LY T  V E  +     V +K+G+ P +  
Sbjct: 139 ATQAEAEGFEVLIVTGDRDSFQLVSDHVTVLYPTKGVSELTRFTPAKVEEKYGLTPRQYP 198

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD  DN+PGIPG+G KTAA  + ++G+   ++   + +K K   + + E+ E+ 
Sbjct: 199 DFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVAEVKGKV-GDKLREHLESV 257

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           +L+R+L  L  DV +    + L     +   L   + ALEF
Sbjct: 258 KLNRRLTELVRDVELPAGPDGLKRIPYDRQALSVIMDALEF 298


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 181/516 (35%), Positives = 287/516 (55%), Gaps = 22/516 (4%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517
           HF+ IGHN+KYD  ++ + + ++  + + D M+++++ + S R + D   +A +   Y  
Sbjct: 378 HFI-IGHNLKYDFAIIENNFKLTPPKKYADTMILAWLYNPSLRVNMD--DLALRLFDYKT 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  K       +   +   +A E++ + L+ +L     L    LL +    +   I
Sbjct: 435 LHFESVVKKGENFASVELEKACNYAAEDAYITLRFYLYFLKNL-EPNLLKLGFESEFNFI 493

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           +V+ +ME +GI+++   L+ +  E  K +  L E IY L  +KFNL+SPKQ+GD+LF KL
Sbjct: 494 EVLRKMEQSGIKLETQKLQNLMQEFEKEIKFLSEEIYTLCDDKFNLNSPKQVGDVLFEKL 553

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696
             PS  KTKTG + T  + LE +    +P++  IL +R+L+K+ STY + L    +    
Sbjct: 554 NLPSAKKTKTG-YSTDEKVLENL-VDKHPVVSKILAYRELAKLYSTYCEPLLKLALKDEN 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+++ +    T TGRL+S EPNLQNIP      +  +  FI+      IS DYSQIELR
Sbjct: 612 SRIYSSFLQTGTATGRLSSKEPNLQNIPAHGQYAKDYKSCFIAEDGFSFISLDYSQIELR 671

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH +K   L + F+N  DIH   A  IFG N    + + R  AK+INF +IYG+    
Sbjct: 672 MLAHFSKDEKLLEAFKNDEDIHARTAIMIFGEN----NYETRSVAKSINFGLIYGMGYKT 727

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L+I  S A +YI++YF  F  I  Y E+ KN  + NGY+ T+ GR+ ++D  N+  
Sbjct: 728 LSQNLKIEASLAKEYIEKYFANFTSIKSYFERVKNEAKINGYISTLSGRKRYFDFANAKP 787

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             +  + ER +IN+ +QGSAADI + AM+ ++K L+  K   +++LQIHDEL+FEV +E 
Sbjct: 788 MQVA-MYERESINSILQGSAADIIKLAMLELYKELDADK---RLILQIHDELIFEVKDEL 843

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                +     ME      + L+V LK +  ++ NW
Sbjct: 844 CEKFEKRARDIMENI----VKLKVNLKTSSSIAKNW 875



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 165/329 (50%), Gaps = 16/329 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R FYA     +   G P   ++GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLFYALKNF-KNSKGEPSGMVSGFANFIYSL----KNEYKSDYIIFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  +I  + +EADDIIA+   
Sbjct: 59  SKGKTFRSEIDPNYKTNRTPPPPELLAQIPICIEMIEKMGFVSISKEYYEADDIIASVVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               +   V II+ DKDL QL+      +Y  + +   D    ++K+G+ P ++    AL
Sbjct: 119 SCNDKDIFVRIITQDKDLYQLIKDGKVSIYSPISKNDYDEAACLEKYGVKPSQIKDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+GN+E I  N S ++ ++ +  +LE  E A LS+K
Sbjct: 179 CGDSADNIPGVKGIGAKGAKNLLDEFGNIEEIYENLSFVRNERSKNLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPITIPLEHLILEDCNGP--RLISFLKALEFTKLINRVATTYDCDAANI---E 300
           L  L  D+ +   +E  +      P  R++ +L+  E   L+ ++         N+    
Sbjct: 239 LASLYEDLDLEDLIEKSVYTQ-EEPLLRVLDYLERFELNSLLKKLKANPQNRNQNLGFKA 297

Query: 301 PVVLDINTTENKGIAIETE----IDRDTT 325
            ++LD NT  +K  ++E+E     D +TT
Sbjct: 298 TLILDENTLFDKLESLESESIIAFDTETT 326


>gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
 gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
          Length = 885

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 183/522 (35%), Positives = 296/522 (56%), Gaps = 35/522 (6%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K  H+ K    +L   GI++ G   D  L +Y+L+ G+ ++D+ +  Q+ L  T  EI +
Sbjct: 381 KFLHDAKTTYHMLAGRGITLGGIAHDTALAAYLLNPGQRTYDLKTTYQRHLHRTL-EITE 439

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR-------PKLIVEKLLHVYERLDKP 575
           + + S+ +D           I N+N ++     +         KL     L +Y  L+ P
Sbjct: 440 TGQLSL-LD-----------ITNTNTLITAAAAILELAATLPTKLATINELELYLDLELP 487

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY-DLSGE-KFNLSSPKQLGDIL 633
           +  ++++ME TGI +D   L++   +   NL++ EE     ++G+    L+SPKQL  +L
Sbjct: 488 LTTILAEMEATGIAVDIPTLEE-QLDTFTNLVTQEETAARTIAGDPNLLLTSPKQLQVVL 546

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP--IIKNILEWRQLSKIKSTYADSLPNH 691
           F  L  P   K KTG + T A+++E +   ++P   + ++L  R+  K+K+T  + L   
Sbjct: 547 FETLGLPKTKKIKTG-YSTAAKEIETL-AANHPHEFLNHLLAHREYQKMKTTL-EGLIKA 603

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADY 750
           +     R+HT +    T TGRL+S +PNLQNIPI+T  G+KIR AF +    + L++ADY
Sbjct: 604 VGDD-GRIHTTFQQTMTSTGRLSSTDPNLQNIPIRTPAGKKIRSAFTVGTNYETLLTADY 662

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIE+R++AH++    L   + N  D+H  V A++F V    V+P++RR  K +++ ++Y
Sbjct: 663 SQIEMRVMAHLSNDPGLITAYNNGEDLHNYVGAKVFDVPPSGVTPELRRKVKALSYGLVY 722

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G+S F L+ QL IP  EA   ++ YFHRF G+  Y++      R++GY  T+F RR +  
Sbjct: 723 GLSAFGLSQQLNIPAGEAKQIMENYFHRFGGVKHYLDTVVTQARKDGYTATLFDRRRYLP 782

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           E+ S   + R   ERAA+NAPIQG+AADI + AM+ +H  L+     +++LLQ+HDELV 
Sbjct: 783 ELTSTNRATRENAERAALNAPIQGTAADIIKIAMLRIHHELKKTNAKSRVLLQVHDELVV 842

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           E+   E+TT  ++I H M+ A    I L+VPL+V+     NW
Sbjct: 843 EIAPGELTTVKKLIEHEMDNA----ITLKVPLEVSTGHGPNW 880



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 157/301 (52%), Gaps = 15/301 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           ++N L L+DG S  +RAFYA P        G   NAI GF +ML  LL + +     +H 
Sbjct: 4   EKNRLMLIDGHSMAFRAFYALPTEKFTTSTGQATNAIYGFLSMLATLLHDEQP----THV 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    TFR E++PDYKA R + P   + Q+P+++    A GI  IE   +EADDII
Sbjct: 60  AVAFDVGRTTFRTEMFPDYKAQRDETPPEFISQIPILKNLLTALGITTIEKPNYEADDII 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    A+  GF   I++ D+D +QLV+ TT +   +K      +   + V  K+G+ PE
Sbjct: 120 ATLATTAQPLGFETLIVTGDRDSLQLVNNTTTVLYPMKGVSVIHRFTPQAVQDKYGLTPE 179

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+P IP +G KTA   + ++GNL N+L NA  IK      N+ E  
Sbjct: 180 QYPDFAALRGDPSDNLPSIPKVGEKTATKWIVQHGNLTNLLNNADTIK-GVVGTNLRERI 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-----TKLINRVATTY 292
           +  +L+R+L  +  ++ +T     L L+  N   L      LEF     TK++     T 
Sbjct: 239 DQVKLNRQLTEMVKNLDLTHTPPELKLQPVNTKTLTEDFNNLEFGTTLRTKILKARGVTV 298

Query: 293 D 293
           D
Sbjct: 299 D 299


>gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24]
 gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24]
          Length = 955

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 177/552 (32%), Positives = 293/552 (53%), Gaps = 25/552 (4%)

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
            ++IDLS    QD+  +N L          +  +    K+ H  K     L   G+ + G
Sbjct: 419 AVYIDLS---GQDAEAENVLAA--------WLRDPEAPKVMHGFKAALKALSARGLELEG 467

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAI 543
             +D  +  Y++   R ++++A +AQ  L+      + K+ +  +  D   DS      +
Sbjct: 468 VVDDTSISGYLIQPDRRTYELAELAQHHLNIEISTAVAKAGQLELSFDG-DDSAAAGELV 526

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             + V+  L      +L   K   +   L+ P+  V++ ME+ GI ID   + +  A+++
Sbjct: 527 HAAAVVHALSRYFEAELKERKAEELLSTLELPVSQVLADMELAGIAIDMQRMDEQLADLA 586

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--N 661
           K + + +E  +   G + NL SPKQL  +LF +L+ P   K K+G + T A  L+ +   
Sbjct: 587 KVIDNAQELAFAAIGHEVNLGSPKQLQTVLFDELQLPKTKKIKSG-YTTDAASLKNLLEK 645

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G   +++ ++  R+ SK++    +SL   + +   R+HT Y+     TGR++S  PNLQ
Sbjct: 646 TGHEFLVQ-LMAHRESSKLRQML-ESLKKSVAE-DGRIHTTYAQNVAATGRISSNNPNLQ 702

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+++ G+++R  F+ S   + L+SADYSQIE+RI+AH++    L Q + +  D+HR 
Sbjct: 703 NIPIRSEEGRRVRGIFVVSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLHRF 762

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           V + IF V  ++V+  MR   K +++ + YG++ F L+ QL I   EA   +K YF RF 
Sbjct: 763 VGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKEYFDRFG 822

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + +Y+    +  R +G+  TI GRR +  ++ S    +R   ER A+N+PIQGSAADI 
Sbjct: 823 AVRDYLRGVVDQARIDGFTATIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAADII 882

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +RAM+ VH  L+   L ++MLLQ+HDELV EV   E     +++   M  A     +L V
Sbjct: 883 KRAMLGVHAELKAQGLKSRMLLQVHDELVLEVAAGEREAVEKLVTEQMGSAA----DLSV 938

Query: 961 PLKVNIKVSNNW 972
           PL V I V  +W
Sbjct: 939 PLDVQIGVGPSW 950



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 158/313 (50%), Gaps = 24/313 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAF+A P        G   NAI GF +ML  L+    KE   +H AV F
Sbjct: 68  LLVLDGHSMAFRAFFALPADKFSTAAGQHTNAIHGFTSMLINLI----KEQKPTHVAVAF 123

Query: 66  DYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D     T R   Y +YK  R + P  +  Q+ L+     A+GI  I++ G+EADD++AT 
Sbjct: 124 DVSDETTHRKAEYSEYKGGRNETPREMSGQIDLIDKVMGAWGIKTIKMPGYEADDVLATL 183

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
             + EK G+ V +++ D+D  QL++       P   + D     ++D   + +K+ + P 
Sbjct: 184 AAMGEKAGYEVLLVTGDRDAFQLITDNVFVLYPRKGVSDI---PRLDAPAIQEKYFVSPA 240

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENIL 234
           +   L AL G+S DN+PG+PG+G KTAA  +  YG LE +L +  +I  K     REN+ 
Sbjct: 241 QYSDLAALVGESADNLPGVPGVGPKTAAKWINLYGGLEGVLEHLDKIGGKVGDSLRENV- 299

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              +  + +R+L  L TD+ + + L+ L     +   L      LEF  +  R+   Y  
Sbjct: 300 ---DAVKRNRRLNRLHTDLELPVTLDDLADPRPDQAALEQLFDELEFKTIRTRLFALYGA 356

Query: 295 DAANI-EPVVLDI 306
           +  ++ E   LDI
Sbjct: 357 EEVDLAERESLDI 369


>gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 354

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 149/306 (48%), Positives = 205/306 (66%), Gaps = 10/306 (3%)

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I   IL WR LSK+K TY D+L   ++    R+HT +S  +T TGRL+S  PNLQNIPI+
Sbjct: 38  IASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQNIPIR 97

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           ++ G  IR+AFI+P   K+ISADYSQIELR+LAH+A +    + F N  DIH + A ++F
Sbjct: 98  SEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVF 157

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV  +++  Q+RR AK+INF IIYGISPF LA +L I  +EAA+YI  YF  +P I  Y+
Sbjct: 158 GV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAEAAEYINYYFSCYPEIKAYM 215

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           EK  +  R +GYVET+FGRR    +IN+    IR   ERAAINAP+QG+AADI +RA I 
Sbjct: 216 EKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQFAERAAINAPLQGTAADIIKRATIQ 275

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           +   L+      K++LQ+HDEL+ EV +E++   +++I   ME A    I + +PL+V I
Sbjct: 276 LFDQLK----VGKIILQVHDELLVEVEDEKVQETAKLIKDIMENA----IEISIPLEVEI 327

Query: 967 KVSNNW 972
           K+ +NW
Sbjct: 328 KIGDNW 333


>gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
 gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
          Length = 904

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 290/537 (54%), Gaps = 18/537 (3%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGFE-DIMLMSYVLDSGRS 501
           T+T E +  L  +  +    K  H  K+    L   G + + G   D  L +Y+   G+ 
Sbjct: 373 TMTPEDVRALDGWLADPAVPKAFHEAKWATHALRGGGFAEIAGVTTDTGLAAYIARPGQR 432

Query: 502 SHDIASIAQKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           S ++  +A   L Y R+++       ++ S+  D   + +  + +I  +  I +L   L 
Sbjct: 433 SFNLPDLA---LRYLRRQLGPEDGGEKQLSLLDDSTGEDKEADDSITEAAAIRELGGALD 489

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
             L       +   ++ P+  V+++ME  GI +DQD L  + A+ +  +    E+ Y + 
Sbjct: 490 DVLDKAGSADLLRTMELPLTFVLARMEEAGIAVDQDGLAGLHADFAARVKQAAESAYSVI 549

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQ 676
           G++ NL SPKQL  +LF +L  P   KTKT    T A  L+ +    ++P +  +LE R 
Sbjct: 550 GKEINLGSPKQLQVVLFDELGMPKTKKTKT-GHTTDADALQWLFEKTEHPFLLYLLEHRD 608

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            +++ +T A  L   I     R+HT +      TGRL+S +PNLQNIP++TD  ++IR  
Sbjct: 609 ATRLMTT-AQGLIKAIGP-DGRIHTTFRQDVAATGRLSSTDPNLQNIPVRTDEARRIRGV 666

Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           F+     + L++ADYSQIE+RI+AH++    L + F    D+H  VA+  FGV I++V  
Sbjct: 667 FVVGEGHEALMTADYSQIEMRIMAHLSGDDGLIEAFRTGEDLHNFVASRAFGVPIDEVGA 726

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           ++RR  K +++ + YG+S F LA+QL +   EA   +  YF RF G+ +Y+       R+
Sbjct: 727 ELRRRVKAMSYGLAYGLSAFGLASQLGVSGEEAKAQMDAYFARFGGVRDYLHAVVEEARR 786

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GY ET+FGRR +  ++ S     R + ERAA+NAPIQGSAADI + AMI V ++L + +
Sbjct: 787 KGYTETLFGRRRYLPDLTSDNQQQRAVAERAALNAPIQGSAADIIKVAMIHVAEALAERE 846

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + ++MLLQ+HDELV EV + E    + ++   M  A    I L VP+ V++    NW
Sbjct: 847 MRSRMLLQVHDELVLEVADGEREELAALVSEQMGSA----IELLVPMDVSVGFGANW 899



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 162/300 (54%), Gaps = 14/300 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  + R  +GL  NA+ GF +ML  LL++       +H AV F
Sbjct: 8   LLLLDGHSLAFRAFYALPEENFRTAEGLTTNAVYGFVSMLINLLRDEDP----THVAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++YP+YKA R K PE    Q+ L++    A GI     +G+EADDIIATY 
Sbjct: 64  DISRKTFRSQMYPEYKATRSKSPESFPGQVDLIKEVLGALGIVWEAHEGYEADDIIATYA 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKI---DIEHVIKKWGIPPEKMVC 181
              +++G+ V I++ D+D +QLV+P  T LY       +     E V +K+G+ P +   
Sbjct: 124 TQGQQQGYQVLIMTGDRDALQLVTPDITVLYPNRGVSDLIRYTPEQVEEKYGLSPAQYPD 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P IPG+G KTA+  ++ Y +L  +L  A  +  K   + + ++ +  R
Sbjct: 184 FAALRGDPSDNLPKIPGVGEKTASSWVKSYHSLAELLERADEVTGKT-GQALRDHLDQVR 242

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  D+ +   +  L  +  +  ++ +    LEF  L +R+  T       +EP
Sbjct: 243 RNRQLTELVRDMEVDHAVADLTRQQWDRDQVHALFDRLEFRVLRDRLFATLGA----VEP 298


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score =  283 bits (725), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 175/517 (33%), Positives = 290/517 (56%), Gaps = 20/517 (3%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
           HF+ IGHN+KYD K++ + +G+++ + + D M++++ L +  S  ++  +A +  +Y   
Sbjct: 378 HFV-IGHNLKYDFKIIQNNFGLNLPQKYADTMILAW-LKNPSSRVNMDDLALRLFNYETL 435

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
                 K       +   +  ++A E++ + L+ +L     L    LL + +  +   I 
Sbjct: 436 HFESLVKKGENFASVELEKACKYAAEDAYITLRFYLDFLKNLET-PLLELAKNCEFDFIK 494

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           ++  ME  GI+++ + L+ +  +    + +L E IY L  ++FNL+SPKQ+GDILF KLK
Sbjct: 495 IIMMMEENGIKLNTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLK 554

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQ 697
            PSG K KTG   +T + +  I    +P+I  IL++R+L+K+ STY + L    +  +  
Sbjct: 555 LPSGKKGKTGY--STDEKVLNILLDKHPVITKILDYRELAKLYSTYCEPLLKLALKDKNS 612

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+++ +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR+
Sbjct: 613 RIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRM 672

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    L
Sbjct: 673 LAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTL 728

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           +  L+I    A  YI++YF  F  I +Y E  KN  +QNG++ T+ GR+ ++D  N+   
Sbjct: 729 SQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPM 788

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            I  + ER +IN+ +QGSAAD+ + AM+ ++K L + K   K++LQIHDEL+FEV ++  
Sbjct: 789 QIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDLC 844

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +     ME      + L+V LK +  ++ NW +
Sbjct: 845 ENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 164/331 (49%), Gaps = 26/331 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIVFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++  
Sbjct: 59  SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGYEADDIIASFVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    AL
Sbjct: 119 TCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+G++E I  N + I+ ++ R  +LE  E A LS+K
Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLIRNERSRNLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           L  L  ++ +       T P E  +L      +++  L+  E   L+ ++    D    N
Sbjct: 239 LASLYDNLEVQNLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292

Query: 299 I---EPVVLDINTTENKGIAIETEIDRDTTI 326
           +     +V D    ENK   I   +D+++ I
Sbjct: 293 LGFKATLVQD----ENKLFEILNTLDKESII 319


>gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132]
 gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
          Length = 888

 Score =  283 bits (724), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 259/487 (53%), Gaps = 19/487 (3%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L +Y+LD    ++  A + Q      R E  ++ +               H      
Sbjct: 419 DLSLAAYLLDPESRNYTWARLRQSMFQDGRPEFAEAARGL-------------HPHSQGL 465

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
             L     +R ++    L  +   L+ P+I V+  ME  GI ID    +    +++  L 
Sbjct: 466 AALAYMTGIRGQVEGAHLNTLMRELEIPLIPVLVAMERAGISIDDAAFQAFLNDVNAQLD 525

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            L  +I   +GE+FN+ S +QL  +LF +L   +G+KT TG   T  Q LE+I    +PI
Sbjct: 526 ELTRSIIGYAGEEFNIRSSQQLAVVLFDQLGIKAGSKTSTGLRSTANQVLEKIR-DQHPI 584

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           +  +LE+R L K++STY + LP  + +   R+HT ++  ST TGRL+S +PNLQNIPI+ 
Sbjct: 585 VDAVLEFRMLEKLRSTYLEPLPKMVGE-DGRLHTHFNQLSTATGRLSSSQPNLQNIPIRG 643

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
             G ++R  F +     L +ADYSQIELR+LAH +K   L   F +  DIH   AA I  
Sbjct: 644 VHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAFRHDEDIHARTAALIHD 703

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +I  V+P  RR AKTINF +IYG+   +LA +L+I ++EA ++ ++YF +   +  Y +
Sbjct: 704 KDISAVTPDERRGAKTINFGLIYGMGVQKLARELQIKQTEAQEFTEKYFAKMATLKAYYD 763

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                   +G+V T+ GRR    E++S  + +     R A+N  IQGSAADI + AM+  
Sbjct: 764 TVVKDAETHGFVTTLAGRRRLLPELHSRNNQLSAQARRQAVNTVIQGSAADIIKMAMVQA 823

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           HK     +L  +++LQ+HDEL+ E PE  I  A   ++  M+        L VPLKV++ 
Sbjct: 824 HKDKRLRELGAQLILQVHDELIIEAPEANIKEAGGRLLEIMQTVA----KLDVPLKVDMG 879

Query: 968 VSNNWQE 974
           V  NW E
Sbjct: 880 VGKNWAE 886



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/234 (38%), Positives = 122/234 (52%), Gaps = 25/234 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DG++ +YRAFYA   LSR  DG P NAI    N + ++L N  K+    H   + D
Sbjct: 14  LYLIDGTALLYRAFYARADLSRS-DGFPTNAI----NTVMRVLMNLLKDEDPLHVGFVMD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT- 125
               TFRN +Y  YKANRP +PE L+ Q+  VR      GIP +  +G EADD I +   
Sbjct: 69  GKGPTFRNALYDGYKANRPAMPEPLVEQVEPVRRGVGLLGIPLLVSEGVEADDCICSLAD 128

Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV--------KEEKIDIEHVIKKWGIPP 176
            Y AE+    V I++TDKD+ Q      CL D V        KE    ++   +  G+ P
Sbjct: 129 RYKAER---PVIILATDKDIKQ------CLDDQVVMVSQMGRKETIHTLDSFREAEGMEP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG-NLENILINASRIKQKKR 229
                 QA+ GDS DNIPGIPG+G  TA  +    G  LE +  N + +  K R
Sbjct: 180 ATWPDFQAVIGDSADNIPGIPGVGPVTARKIFAATGPTLEELRDNLASLPDKLR 233


>gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|332287087|ref|YP_004421988.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1]
 gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC]
          Length = 869

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 187/530 (35%), Positives = 306/530 (57%), Gaps = 14/530 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG-RSSHDI 505
           ++++ LK FF+ +     G+NIK D   L   GI +     D+ L  ++++ G + S+  
Sbjct: 350 DVITPLKDFFKRKDTEFYGYNIKRDHHALKNAGIHIDNITLDLALAEHLINGGAKISYQT 409

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
             +    +    K   +  + S+PI K S ++  E+  E  + + ++   L  +L ++ +
Sbjct: 410 LLVDHGLMESAGKYGKEWGQLSLPILK-SPAKPAEYFGEFVSHLPKIKKSLLEELKIKGV 468

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             ++  ++ P+ +V+  +E  G+ +D + L+++   +S+ L  L ++IY L+G  FN+ S
Sbjct: 469 EDLFFNMEMPLENVLFTIERNGMPLDVEDLQELERTLSEELAILTDDIYTLAGASFNIKS 528

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQL D+L+ KL      K ++    T A+ LE +  G++ I++ IL +R + K+ STY 
Sbjct: 529 PKQLSDVLYNKLGLTPIDKARS----TKAEVLEAL-LGEHEIVEKILAFRAIEKLLSTYV 583

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
            +LP  I+  T R+H  ++   T+TGRLA  +PNLQNIPI+++ G+ +R+AF  +     
Sbjct: 584 KALPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFRDTRQNNY 643

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            +SADYSQIELR LAH+++   L   FE+  D+H   A+++F V +E+V+ Q R  AKT+
Sbjct: 644 FLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTV 703

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYG   + L+  L+I  SEA   I  YF R+P +  +I++T +   +N  V+T+ G
Sbjct: 704 NFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFIDETISQACENLRVKTLLG 763

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           R    D      +S R  + R A+N  IQGSAA++ + AM+ +  +LE  KL ++MLLQI
Sbjct: 764 RERIIDNWTEFSNS-RAASGRLAVNTRIQGSAAELIKLAMLQLADALEKRKLRSRMLLQI 822

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+FEVPEEE      ++   ME A +    L VPL VNI +  NW E
Sbjct: 823 HDELIFEVPEEEKEEVQTLVRDIMESAMI----LSVPLVVNILIGKNWAE 868



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 167/322 (51%), Gaps = 23/322 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +F++D S F++RA++A P + +   G    A+ GF   + KL+    KE   +H   +FD
Sbjct: 4   IFILDASGFVFRAYFALPDM-KNSSGEGTQAVFGFIRSINKLI----KEFSPNHMVAVFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R EIY DYK +R K  E L  Q+P+V+      G+  +EI+  EADD+IA+ T
Sbjct: 59  GPNNKQSRREIYADYKIHREKKDENLYQQIPIVKEYCNLLGLRYLEIEDVEADDVIASIT 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQA 184
             A  EG+ V + + DKDL+QLV P     +  K++  ID   V+  +G+PP ++    A
Sbjct: 119 KRAVAEGYEVCLCTADKDLLQLVGPNVVALNPWKDKPPIDENGVVDIYGVPPSRIADYLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPG+ G G K A  LLQ+Y ++E IL +   +     +  I E  +   LS+
Sbjct: 179 LVGDTSDNIPGVSGCGPKKATALLQKYHSVEGILEHLDELTGSTHK-MISEQKDVLLLSK 237

Query: 245 KLVMLRTDVPITI-------PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            L +L  ++P+ +       PL  +  E+ N     +F     F  L+  V  T + D  
Sbjct: 238 DLAVLNNNIPLPMSISGFEFPLHQVRQEEIN-----TFYMRHGFKTLVQPVEETSNIDVE 292

Query: 298 NI---EPVVLDINTTENKGIAI 316
            I   +P+V  ++T + K +A 
Sbjct: 293 IINSSQPLVRVLSTLQGKSVAF 314


>gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116]
 gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1]
 gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 879

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 177/518 (34%), Positives = 291/518 (56%), Gaps = 22/518 (4%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517
           HF+ IGHN+KYD K++ + +G+++ + + D M+++++ + S R + D   +A +  +Y  
Sbjct: 378 HFV-IGHNLKYDFKIIQNNFGLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  K       +   +  ++A E++ + L+ +L     L    LL + +  +   I
Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLET-PLLELAKNCEFDFI 493

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++  ME  GI++D + L+ +  +    + +L E IY L  ++FNL+SPKQ+GDILF KL
Sbjct: 494 KIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKL 553

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696
           K PSG K KTG + T  + L  +    +P+I  IL++R+L+K+ STY + L    +  + 
Sbjct: 554 KLPSGKKGKTG-YSTDEKVLNAL-LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKN 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+++ +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR
Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    
Sbjct: 672 MLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L+I    A  YI++YF  F  I +Y E  KN  +QNG++ T+ GR+ ++D  N+  
Sbjct: 728 LSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKP 787

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             I  + ER +IN+ +QGSAAD+ + AM+ ++K L + K   K++LQIHDEL+FEV ++ 
Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +     ME      + L+V LK +  ++ NW +
Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 162/328 (49%), Gaps = 20/328 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++  
Sbjct: 59  SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    AL
Sbjct: 119 TCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPHQIRDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS+K
Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           L  L  ++ +       T P E  +L      +++  L+  E   L+ ++    D    N
Sbjct: 239 LASLYENLEVQDLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTI 326
           +      I   ENK   I   +D+++ I
Sbjct: 293 LGFKATLIQ-DENKLFEILNTLDKESII 319


>gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
 gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
          Length = 904

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/414 (37%), Positives = 235/414 (56%), Gaps = 14/414 (3%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           + + L++P+  V+  M   GI ID+  L  +  E    +   +     + GE+ NL+SPK
Sbjct: 495 ILDELEQPLQRVLETMHERGIAIDEQALAALREEFEGFVAQAKREAGAIVGEEVNLASPK 554

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIK 681
           QL  +LF  L  P+  K  +G   T A+ L  +    +P       +  +L +R++SK+ 
Sbjct: 555 QLQVVLFETLALPTTRKISSGH-STDAESLTDLQESLDPESSGHQFLSWLLRFREMSKL- 612

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           + Y   L   ++  + RVHT +   +  TGRLAS EPNLQNIP++T  GQ+IR AF++  
Sbjct: 613 TGYLVGLDKVVDAGS-RVHTTFQQTAAATGRLASTEPNLQNIPVRTAEGQRIRDAFVAGE 671

Query: 742 T-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
             + L++ADYSQIE+RI+AH+++   L + F +  D+H  VA+ +FGV+ + V P MR  
Sbjct: 672 GFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDLHNFVASRVFGVSPDAVDPAMRSK 731

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K +++ + YG+S F L+ QLRI R+EA      YF RF G+ +Y+  T    R  GY E
Sbjct: 732 TKAVSYGLAYGLSAFGLSRQLRISRAEATALRDGYFERFGGVRDYLHHTVETARTTGYTE 791

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           TI GRR +  ++ S     R   ER A+N+PIQGSAADI + AM+ V   +   +L+++M
Sbjct: 792 TILGRRRYLPDLTSDNRQRRENAERVALNSPIQGSAADIIKLAMLRVESRMRAAELSSRM 851

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LLQ+HDELV EV   E+    +I+   M  A      L VPL V + +   W+E
Sbjct: 852 LLQVHDELVVEVAAGELDQVREIVEEGMGSAY----QLSVPLDVGVGIGRTWRE 901



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 146/289 (50%), Gaps = 10/289 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  + L+DG +  +RAF+A P        G   NA+ GF  ML  ++ + R     +H A
Sbjct: 8   DQRILLIDGHAMAFRAFFALPADGFSDGRGQATNAVYGFTRMLINVVASERP----THVA 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD P  TFR+ IY  YK  R + P     Q+ L+     A G+  +  + +EADDIIA
Sbjct: 64  VAFDLPGGTFRDRIYDQYKGGRDETPPAFHGQIDLIMQVLDALGVRWLTYEDYEADDIIA 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE  G    I+S+D+D +QLV     L   +K      ++    V +K+GIPPE+
Sbjct: 124 TLATRAEAAGDEALIVSSDRDAIQLVGAKVTLLQPIKGVTEMRRMTPAAVEEKYGIPPER 183

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DN+PG+PG+G KTAA  L +YG+L  ++ +A  IK K   +++ ++ E
Sbjct: 184 YPDLAALVGEAADNLPGVPGVGPKTAAKWLTQYGDLPGLIAHAGEIKGKA-GQSLRDHLE 242

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
               +R +    T + +     H  L   +  R++     L F   I R
Sbjct: 243 DVERNRLMNAAYTTLDLPEDPAHYSLGGGDRARVLEVFDDLAFGDTIRR 291


>gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S]
 gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S]
          Length = 912

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 178/511 (34%), Positives = 288/511 (56%), Gaps = 12/511 (2%)

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK--EILKS 523
           H  K     L   G  + G   D  L +Y++  G+ S ++  ++ ++L    +  E  + 
Sbjct: 404 HEAKRAMHALRGRGWMLAGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEESGQQ 463

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           + S +  +  +D++  E  I  S  +  L   L  +L   +   +   ++ P+++V++ +
Sbjct: 464 QLSLLDDEDAADAEAAEGEILRSRAVRDLAAALDTELADIEATGLLADMELPLLEVLANL 523

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TGI +D   L  + +  +  +    E  Y + G++ NL SPKQL  +LF +L  P   
Sbjct: 524 ESTGIAVDTTHLHDLQSAFAARVAEAAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTK 583

Query: 644 KTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           KTKT  + T A  L+ +     +P ++++LE R  +++K T  D L   + +   R+HT 
Sbjct: 584 KTKT-GYTTDADALQSLFEKTQHPFLEHLLEHRDATRLKVT-VDGLLKTVAE-DGRIHTT 640

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761
           ++     TGRL+S EPNLQNIP++TD G++IR  F+     + L++ADYSQIE+RI+AH+
Sbjct: 641 FNQTVAATGRLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYETLLTADYSQIEMRIMAHL 700

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    L + F    D+H  V +  FGV IE+V+P++RR  K +++ + YG+S F LA QL
Sbjct: 701 SGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQL 760

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
           +I   EA   +  YF RF G+ +Y+ +     R+ GY ET+FGRR +  ++NS     R 
Sbjct: 761 KISTEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRYLPDLNSDNRQRRE 820

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           + ERAA+NAPIQG+AADI + AMI V ++L +  LA++MLLQ+HDELV EV   E     
Sbjct: 821 VAERAALNAPIQGTAADIIKVAMIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVE 880

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           Q++   M  A    I+L VPL+V++    +W
Sbjct: 881 QLVREKMAAA----IDLSVPLEVSVGTGRSW 907



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 161/296 (54%), Gaps = 22/296 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  + K   G   NA+ GF +ML  LL++ +     +H A  F
Sbjct: 25  LMLLDGHSLAYRAFFALPAENFKTQSGQATNAVYGFTSMLINLLRDEQP----THVAAAF 80

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E +P+YKANR K P+    Q+ + +    A GIP + I+GFEADD+IAT T
Sbjct: 81  DVSRQTFRAEAFPEYKANRSKTPDEFKGQVEITKDVLAAMGIPVMAIEGFEADDVIATLT 140

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
             A   G+ V +++ D+D +QLV+       P   + D  +     +E   +K+G+ P++
Sbjct: 141 TQATALGYRVLVVTGDRDSLQLVTDDVTVLYPRKGVSDLARFTPAAVE---EKYGLTPQQ 197

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILE 235
                AL GD  DN+PGIPG+G KTAA  ++EYG+LEN++ +  +++ K     R N+  
Sbjct: 198 YPDYAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLENLVNDVDKVRGKVGDALRANV-- 255

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              +  L+R L  +  DV +    + L L   +  R+ +    LEF  L +R+  T
Sbjct: 256 --NSVLLNRHLTEMVRDVAVPYTPDQLALAPWDRERIHALFDDLEFKVLRDRLFAT 309


>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
 gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
          Length = 861

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 170/493 (34%), Positives = 276/493 (55%), Gaps = 23/493 (4%)

Query: 489 IMLMSY--VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS---QVQEHAI 543
           + + SY  VL+ GR   D++  A+ +       +L   + +  +++I D    ++  H  
Sbjct: 378 VYVTSYKSVLEQGR--LDLSGCAEIFDIELAAYLLSPEERNYSLERIRDGLGDEIDVHRE 435

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID----QDLLKQVS 599
            +   +L +  LL  +L   +LL + + L+ P+ +V+ +M+  GI+ID     D L  V 
Sbjct: 436 NHGQAVLAVGRLLHARLAGSELLGLLQDLELPLTEVLVRMQKRGIRIDAARFHDFLGMVQ 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           AE+ +    L   I++ +GE+FN+ S +QL ++LF++L      KT  G   T++  LE 
Sbjct: 496 AELDR----LTRTIHEQAGEEFNIRSSQQLAEVLFSRLGLACKQKTPGGAQSTSSSVLEG 551

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++PI+ ++LE+R   K++STY + +P   +K   R+HT ++  +T TGRL+S  PN
Sbjct: 552 L-AAEHPIVADVLEFRMYEKLRSTYLEPMPQLADK-NGRIHTTFNQLATATGRLSSSNPN 609

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  LG ++R  F++ P  +L++ADYSQIELR+LAH++    L + F    DIH 
Sbjct: 610 LQNIPIRGALGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHA 669

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A  +F  +  +VS   RR AKTINF ++YG+ P +L  +L I   EA ++I  YF + 
Sbjct: 670 RTAGILF--DTTEVSADERRKAKTINFGLLYGMGPQKLGRELGISLKEAKEFIAVYFSKL 727

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             + E+ E+ +   +  GYV T+ GRR    EINS  +++     R AIN  +QGSAADI
Sbjct: 728 SRVREFYEEIEAGAKSLGYVTTLAGRRRMLPEINSRNTNMAQQARRMAINTVVQGSAADI 787

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            ++AM+ V KS    +L   ++LQIHDEL+ E P        + +   M        +L 
Sbjct: 788 IKKAMLEVDKSPVIGELGASLILQIHDELLLEAPAARAREVGEAVAGIMASV----YSLS 843

Query: 960 VPLKVNIKVSNNW 972
           VPL V+  V ++W
Sbjct: 844 VPLVVDWGVGDDW 856



 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/287 (36%), Positives = 160/287 (55%), Gaps = 12/287 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   LFL+DG +FIYR FYA P   R  DG P +A+     +++KL+    +E   SH  
Sbjct: 10  KTEPLFLIDGHAFIYRGFYAYPDFKRS-DGFPTSAM----YIVFKLVLRLLREENPSHLV 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            + D  A TFR+E+ P YKANRP++PE L  QL  ++   +  GI  +E +G EADD IA
Sbjct: 65  FVTDGRAPTFRHELLPTYKANRPRMPEGLAAQLEPLKAGLRLLGIRVLEAEGGEADDCIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV--KEEKIDIEHVIKKWGIPPEKMV 180
           +      KE  +V I+  DKDL Q +     ++D    KE+ +  E  +++ G+ P++  
Sbjct: 125 SLAGRF-KEERSVVIVGADKDLRQCLDENVVMWDPAQGKEKLVTREGFVEETGLQPDQWA 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YAET 239
             QA+TGD+ DNIPGIP +G KTA   L+ + +L+ +  N  R+  K+  + +L  + E 
Sbjct: 184 DFQAMTGDAADNIPGIPKVGPKTAMGFLRRFPSLDLLKKNFDRLTAKE--QTLLSPHMEQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             + RKL  LRTD+     L+ L + + +G  L  F K  EF  L++
Sbjct: 242 VFVYRKLTTLRTDMCTEFGLDDLAVGEVDGGAL-DFFKEYEFRSLLS 287


>gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277]
 gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277]
          Length = 863

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 184/521 (35%), Positives = 282/521 (54%), Gaps = 35/521 (6%)

Query: 465 IGHNIKYD-KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           IG N+KYD K+V    G+     F+D M++++++D G SS  + ++A++   Y   +   
Sbjct: 365 IGQNLKYDFKVVKRNLGLEPPVNFKDTMILAWLMDPG-SSVGMDALAKRLYDYDTIKFED 423

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWL----LLRPKLIVEKLLHVYERLDKPMID 578
             K       ++     ++A E++ + L+ +     LL P+L+     H +       I 
Sbjct: 424 VVKRGETFASVALENAAKYAAEDAWITLKFYKSFLNLLDPELLALADTHEF-----AFIL 478

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
            +  ME  GI I+++ ++ +       + +L   IY+L+GE FN++S KQLG +LF  LK
Sbjct: 479 TLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYELTGENFNINSVKQLGSVLFEHLK 538

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ- 697
            P   KTKTG     A   E I+  ++P+I+ +LE+R+L K++STY + L N   K    
Sbjct: 539 LPVKKKTKTGYSTDEAVLAELID--EHPVIEKLLEYRELYKLQSTYCEPLLNLAKKDANS 596

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R++T +    T TGRL+S  PNLQNIP +  L + +R  F +      +  DYSQIELR+
Sbjct: 597 RIYTNFIQTGTSTGRLSSKNPNLQNIPARGALAKDVRGCFEAKSDFSFVGLDYSQIELRL 656

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH ++   L + F N  DIH   A  IFG        Q R  AK+INF +IYG+   +L
Sbjct: 657 LAHFSRDEALLRAFANDEDIHARTAISIFG----SAEGQNRAVAKSINFGLIYGMGSSKL 712

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD-EINSPK 876
           A Q+ I R+EA +YI+RYF  FP I  ++E  K   +  G+V T+ GR+  +D    +P 
Sbjct: 713 ANQVSITRAEAKEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLLGRKRLFDFTTATPM 772

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-- 934
            +   + ER A+N   QGSAADI + AM+ +   L       +MLLQIHDEL+FEV +  
Sbjct: 773 QTA--MYEREAVNTIFQGSAADIIKMAMVKIRPLLSPR---ARMLLQIHDELIFEVQDGY 827

Query: 935 -EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            EE   A+Q I+  + K       L V LK ++ V+ +W E
Sbjct: 828 AEEFGAAAQKIMQEIYK-------LNVLLKTSLNVAKDWGE 861



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 124/235 (52%), Gaps = 5/235 (2%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G P   ++GF + +  L    R+E  + +     D    T R+EI  +YKANR + 
Sbjct: 5   KNREGKPSGMVSGFASFIMNL----RQEFASDYIIFALDSKGKTLRHEILGEYKANRSEP 60

Query: 88  PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           P  L  QLP+     +  G+ A+  +G+EADDIIA+     ++    V I++ DKDL QL
Sbjct: 61  PAALKEQLPVCIEMIEKMGLAAVSREGYEADDIIASVVKECKQRDIFVRIVTHDKDLYQL 120

Query: 148 V-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           +      +Y    +   D    I+K+G+PP  +    A+ GDS DNIPG+ GIG   A  
Sbjct: 121 IEDGKVSIYSPQSKIDHDSASCIEKYGVPPSCIRDFLAIAGDSSDNIPGVKGIGAVGAKK 180

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           LL E+GNLE I  N   ++ ++ R  + E  E+A LS++L  L  DVP  + L+ 
Sbjct: 181 LLNEFGNLEGIYENLPLVRNERIRGMLAEGRESAFLSKRLTSLFDDVPDVLDLKR 235


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 177/518 (34%), Positives = 290/518 (55%), Gaps = 22/518 (4%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517
           HF+ IGHN+KYD K++ + +G+++ + + D M+++++ + S R + D   +A +  +Y  
Sbjct: 378 HFV-IGHNLKYDFKIIQNNFGLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  K       +   +  ++A E++ + L+ +L     L +  LL + +  +   I
Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLEI-PLLELAKNCEFDFI 493

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++  ME  GI++D + L+ +  +    +  L E IY L  ++FNL+SPKQ+GDILF KL
Sbjct: 494 KIIMMMEENGIKLDTNALEALMKKFENEIKILSEEIYTLCEDRFNLNSPKQVGDILFEKL 553

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696
           K PSG K KTG + T  + L  +    +P+I  IL++R+L+K+ STY + L    +  + 
Sbjct: 554 KLPSGKKGKTG-YSTDEKVLHAL-LDKHPVITKILDYRELAKLYSTYCEPLLKLALKDKN 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+++ +    T TGRL+S +PNLQNIP      +  +  F++       S DYSQIELR
Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFTSLDYSQIELR 671

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    
Sbjct: 672 MLAHFSEDEKLLNAFTNDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L+I    A  YI++YF  F  I +Y E  KN  +QNG++ T+ GR+ ++D  N+  
Sbjct: 728 LSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKP 787

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             I  + ER +IN+ +QGSAADI + AM+ ++K L + K   K++LQIHDEL+FEV ++ 
Sbjct: 788 MQIA-MYERESINSILQGSAADIIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +     ME      + L+V LK +  ++ NW +
Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 162/328 (49%), Gaps = 20/328 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA     +   G     ++GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLYYALKGF-KNSQGQASGMVSGFANFIYGL----KNEYKSDYIIFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++  
Sbjct: 59  SKGKTFRSEIDPSYKQNRTPPPPELLEQIPICIEMIEKMGFISVSREGYEADDIIASFVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             E +   V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    AL
Sbjct: 119 TCENKDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEVACLEKYGVKPNQIRDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD+ DNIPG+ GIG K A  LL E+G++E I  N + I+ ++ R  +LE  E A LS+K
Sbjct: 179 CGDNSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLIRNERSRNLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           L  L  ++ +       T P E  +L      +++  L+  E   L+ ++    D    N
Sbjct: 239 LASLYENLEVQDLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTI 326
           +      I   ENK   I   +D+++ I
Sbjct: 293 LGFKATLIQ-DENKLFEILNTLDKESII 319


>gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
 gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
          Length = 915

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 169/522 (32%), Positives = 271/522 (51%), Gaps = 15/522 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H  K     L   G+ + G   D  L +Y+    R ++D+  +A   + Y R+E L 
Sbjct: 399 KVVHASKEAWHALAGRGMPLAGVTFDTELAAYLCQPDRRAYDLGDLA---IGYLRRE-LG 454

Query: 523 SRKSSIPIDKISDSQVQ-----EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           S  + +      D ++        A   ++ +  L  +L  +L       +   L+ P++
Sbjct: 455 SEDAQVGGQGALDLELDGTDEGRRAAVRASAVRDLADVLAGELGDRGADGLLRDLELPLV 514

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           DV+++ME TGI  D   L  +       +       Y + G + NL SPKQL ++LF +L
Sbjct: 515 DVLARMERTGIATDGAYLSSLEKSFDAQVQDAAAEAYAVIGREVNLGSPKQLQEVLFDQL 574

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
             P   K KTG     A   +      +P ++++L  R   +++ T  + L   +     
Sbjct: 575 GMPKTKKIKTGYTTDAASLTDLFARTQHPFLEHLLAHRDAIRLRQTV-EGLLRSVAP-DG 632

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756
           R+HT +      TGRL+S +PNLQNIPI+T+ G++IRRAF+     + L++ADYSQIE+R
Sbjct: 633 RIHTTFQQTIAATGRLSSADPNLQNIPIRTEAGRQIRRAFVVGDGYETLLTADYSQIEMR 692

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH++    L   F +  D+H  V + +FGV  ++V+P MR   K +++ + YG+S + 
Sbjct: 693 IMAHLSGDEGLIDAFRSGEDLHSYVGSRVFGVPTDEVTPAMRSKIKAMSYGLAYGLSSYG 752

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ QL I  SEAA  ++ YF RF G+ +Y+    +  R  GY +TI GRR +  ++ S  
Sbjct: 753 LSQQLTIEVSEAAGLMQDYFARFGGVRDYLTGVVDVARTTGYTQTILGRRRYLPDLTSDN 812

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
              R   ER A+NAPIQGSAAD+ + +M+ V + L    LA+++LLQ+HDELV EV   E
Sbjct: 813 RQRREAAERMALNAPIQGSAADLIKVSMLGVDRELTRRGLASRLLLQVHDELVLEVAAGE 872

Query: 937 ITTASQIIVHSMEKACLPKIN--LRVPLKVNIKVSNNWQEEN 976
                 ++   M  A     +  L VPL V++ V  +W +  
Sbjct: 873 REEVEALVREQMGAAGDAATDGPLDVPLDVSVGVGGSWHDAG 914



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 153/287 (53%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P+       G P NA+ GF +ML  LL++       +H AV F
Sbjct: 23  LLLIDGHSMAYRAFFALPVDKFATSTGQPTNAVFGFTSMLANLLRDEEP----THVAVAF 78

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E Y  YK NR   PE    Q+ +++       +P +E   FEADDI+AT +
Sbjct: 79  DVGRTTFRTEQYEAYKGNRDATPEPFRGQVAVIQRVLATMHVPVLEKPHFEADDILATLS 138

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
             A  +G  V + + D+D  QLV+   T LY    V E  ++    V  K+G+PPE+   
Sbjct: 139 RQARAQGMQVLVCTGDRDAFQLVNDDVTVLYPVKGVSELARMTPAAVEAKYGVPPERYPD 198

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S DN+PG+PG+G KTAA  + +Y  LE IL +A  +  K   E++ E  E  R
Sbjct: 199 LAALVGESSDNLPGVPGVGPKTAAKWITQYDGLEGILAHADAVTGKA-GESLRENLEQVR 257

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           L+R+L  L  DV + +  E L     +   L + L  LEF  L +R+
Sbjct: 258 LNRQLNRLVDDVELPLGPEDLAARPWDRHELHAILDELEFRTLRDRL 304


>gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 893

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 167/494 (33%), Positives = 280/494 (56%), Gaps = 25/494 (5%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE-- 544
           ED+ L +Y+L   +  + + ++++K+L           + S+P+ + +   +     E  
Sbjct: 416 EDVELEAYLLGPDQREYSLPTLSEKYL-----------QRSLPVAESAQLSLLRDFSELA 464

Query: 545 -NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             + V+  L  +L  +L   +L  +Y  L+ P+   + ++E  G+ +  D+L Q+  E++
Sbjct: 465 GQAQVVYDLHEVLFKQLETTQLAELYRGLELPVQADLYELEKHGVAMSMDVLNQLLEELT 524

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL-EQINC 662
           + +   EE  Y+  G K NL+SP QL  +LF +L+ P   KTK G + T A+ L E    
Sbjct: 525 EQVEVAEEAAYNAIGHKVNLASPMQLQTVLFEELQMPKTKKTKRG-YTTNAEALVELYEK 583

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
             +P ++++L  R   K++    + L + +     R+HT +      TGRL+S EPNLQN
Sbjct: 584 TQHPFLQHLLAHRDKIKMRQI-VEGLISAVGA-DGRIHTTFQQTVAATGRLSSTEPNLQN 641

Query: 723 IPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           IP +T  G +IR AF+ P T    L++ADYSQIE+R++AH++K   L + F++  D+HR 
Sbjct: 642 IPARTAEGMRIRGAFV-PGTGFDYLLTADYSQIEMRLMAHMSKDEALIEAFKSGEDLHRT 700

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           +AA +F V +E+V+P +R   K  ++ + YG+S + L+ QL I   EA    ++YF RF 
Sbjct: 701 MAAMVFAVPVEEVTPALRSQIKATSYGLAYGLSSYGLSQQLGISVPEARKLKEKYFERFG 760

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  ++ +     R+ G+  T+ GRR +  ++NS  +++R + ERAA+NAPIQG+AADI 
Sbjct: 761 GVGRFLGEVVEEARERGFTATMMGRRRYLPDLNSGNTNLRAMAERAALNAPIQGTAADII 820

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM  V + L +  LA+++LLQ+HDELV EV   E+    QI+   M  A      L +
Sbjct: 821 KLAMHLVMRVLRERGLASRVLLQVHDELVLEVVASELNEVIQIVTDVMSGAA----ELSL 876

Query: 961 PLKVNIKVSNNWQE 974
           PL V+  V  +WQ+
Sbjct: 877 PLDVSFGVGASWQD 890



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 171/338 (50%), Gaps = 29/338 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L ++DG S  +RAF+A P  +     G   NA+ GF  M  +L++    E   +H A
Sbjct: 13  QQKLLIIDGHSMAFRAFFALPPENFTTTTGQATNAVYGFTTMALRLIE----EHQPTHIA 68

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    +FR++ YP+YKA R + P+    Q+ L++   +  GI  I   GFEADDI+A
Sbjct: 69  VAFDTKVKSFRSDEYPEYKAGRAETPQEFKGQIGLIKQVLETVGITWITKDGFEADDILA 128

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKEEKI-DIEHVIKKWGIPPEK 178
           T     ++ G  V + S D+D  QL++     +Y   T  + KI D   V +++G+PP+ 
Sbjct: 129 TLAKQGDEAGMKVLVASGDRDSFQLITDNVNVIYPGRTPADLKIMDAAAVEERYGVPPQW 188

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              + ALTG+  DN+PG+PG+G KTAA  + +Y  L  +L NA +I   KR E + E+  
Sbjct: 189 YPHIAALTGEKADNLPGVPGVGEKTAAQWVMKYAGLAGVLANADKIG-GKRGEALREHEA 247

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               +R+L  L T++ +   +  L  E  N   +      LEF +L  RV   +D DA  
Sbjct: 248 DVLRNRRLNELLTNLELPYNVADLTREPVNRQAVNELFDVLEFNRLRKRV---FDLDA-- 302

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
                   N   N+      EID   TI+T +   +SD
Sbjct: 303 --------NADSNE------EIDDTRTIETLELKLVSD 326


>gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 879

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 177/518 (34%), Positives = 291/518 (56%), Gaps = 22/518 (4%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517
           HF+ IGHN+KYD K++ + +G+++ + + D M+++++ + S R + D   +A +  +Y  
Sbjct: 378 HFV-IGHNLKYDFKIIQNNFGLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  K       +   +  ++A E++ + L+ +L     L    LL + +  +   I
Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYISLRFYLYFLKNLET-PLLELAKNCEFDFI 493

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++  ME  GI++D + L+ +  +    + +L E IY L  ++FNL+SPKQ+GDILF KL
Sbjct: 494 KIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKL 553

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696
           K PSG K KTG + T  + L  +    +P+I  IL++R+L+K+ STY + L    +  + 
Sbjct: 554 KLPSGKKGKTG-YSTDEKVLNAL-LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKN 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+++ +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR
Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    
Sbjct: 672 MLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L+I    A  YI++YF  F  I +Y E  KN  +QNG++ T+ GR+ ++D  N+  
Sbjct: 728 LSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKP 787

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             I  + ER +IN+ +QGSAAD+ + AM+ ++K L + K   K++LQIHDEL+FEV ++ 
Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +     ME      + L+V LK +  ++ NW +
Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 162/328 (49%), Gaps = 20/328 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++  
Sbjct: 59  SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    AL
Sbjct: 119 TCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPHQIRDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS+K
Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           L  L  ++ +       T P E  +L      +++  L+  E   L+ ++    D    N
Sbjct: 239 LASLYENLEVQDLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTI 326
           +      I   ENK   I   +D+++ I
Sbjct: 293 LGFKATLIQ-DENKLFEILNTLDKESII 319


>gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
 gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
          Length = 888

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/412 (37%), Positives = 232/412 (56%), Gaps = 6/412 (1%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +   L+ P++ V+  ME  GI ID+      + E++  L  LE +I  L+G+ FN  
Sbjct: 483 LSRLVAELEMPLVPVLVAMERAGIGIDKTAFAAFADEVAGRLAILETDIVALAGKPFNPR 542

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +QLG+IL+T L   +  KT  G   T+   LE++  G +P++  ILE+R+L K++STY
Sbjct: 543 SSQQLGEILYTDLGLKAHGKTPGGAASTSQDALERL-AGAHPLVDRILEFRKLEKLRSTY 601

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
              +P  +  R  R+HT  +  +T TGRL+S  PNLQNIPI+ + G+++R  F + P  +
Sbjct: 602 LAPMP-ALADRDSRIHTTLNNMATATGRLSSSNPNLQNIPIRGEFGRRMRACFTAGPGNR 660

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L++ADYSQIELR+LAH++  + L   F +  DIH   AA +F    E ++P  RR AKTI
Sbjct: 661 LVAADYSQIELRVLAHLSGESALLDAFAHGADIHARTAAILFDKPEEAIAPDERRQAKTI 720

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF ++YG+ P +L+  L I    A  +I RYF R PG+  + E      +++G+V T+ G
Sbjct: 721 NFGLLYGMGPQKLSRDLGIKLDAAKAFIARYFERLPGLSAFYEGIVEAAKRDGFVTTLAG 780

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR    +I S  S + +   R AIN  +QG AADI + AM++         L   ++LQI
Sbjct: 781 RRRLLPDIGSANSQLSSQARRQAINTVVQGGAADIIKMAMLAAAGDAALAGLGAVLVLQI 840

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           HDEL+ E PE     A   +   M       I+L VPL+V+      W E +
Sbjct: 841 HDELLLETPEAAAKEAGARLAGLMTGV----ISLAVPLEVDWGTGRTWGEAH 888



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/283 (38%), Positives = 143/283 (50%), Gaps = 9/283 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  LFLVDGS++IYR ++A   L+R  DG P +A+     +L+K+L    KE    H   
Sbjct: 11  QTPLFLVDGSAYIYRGYHAFRDLARS-DGFPTSALFMIFRLLFKIL----KEQEPRHLVF 65

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D    TFR+ IY  YKANR  +PE L  QL  +R      G+P I  QG EADD IA+
Sbjct: 66  FLDGKGPTFRSNIYAAYKANREAMPEPLARQLEPLRQGLSLLGVPVIIPQGAEADDGIAS 125

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVC 181
                      V I+  DKDL Q +S    LYD + K EKI  +       GI P     
Sbjct: 126 LAARFSSN-LPVVIVGADKDLKQCLSDRVVLYDPSGKAEKITTLSDFTADCGIAPASWPD 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           LQAL GD+ DNIPGIPG+G KTA  +L++   LE +      IK K  R+ I+   E   
Sbjct: 185 LQALVGDTSDNIPGIPGVGPKTALDILRQLPTLEAVRDGLDTIKPKV-RDKIVPLMEELF 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           + R+L  L+TD+     L+   L   +   L  FL A E   L
Sbjct: 244 IYRELTRLKTDILPETSLDDARLGAPDAKALREFLLAYELRNL 286


>gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
 gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
          Length = 811

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 178/485 (36%), Positives = 276/485 (56%), Gaps = 30/485 (6%)

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +TI+   +V   Q++  K  L+K I +Y               + K  K++L+R+ I + 
Sbjct: 347 DTIYATSNVSLLQEALFKKALSKPIKTY---------------DFKRSKVLLNRFNIDLP 391

Query: 485 --GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQV 538
              F D  L  Y+L S    + +++IA+ +    L        K  K +IP      ++ 
Sbjct: 392 EPAF-DTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRF 445

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            EH  +   V++     +  +L   +   +   +++P+ +V+++MEI GI++ ++ L ++
Sbjct: 446 LEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEM 505

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           + E  K + +L + IY+L+G++FN++SPKQLG +LF  L  P     KT    +TA D+ 
Sbjct: 506 AIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVL 565

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +P++  ILE+RQ++K++STY   L ++I     ++HT Y    T TGRL+S +P
Sbjct: 566 ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDP 624

Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+ IR+AF+ S     L+S+DYSQIELR+LAHI+K   L   F+   DI
Sbjct: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L IPR  A  YI  YF
Sbjct: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYF 744

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PGI  Y+E      +  GYVET+F RR    +INS   +IR   ER AIN+PIQGSA
Sbjct: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804

Query: 897 ADITR 901
           ADI +
Sbjct: 805 ADILK 809



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/287 (39%), Positives = 155/287 (54%), Gaps = 20/287 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +N L L+DGSS  +RAF+A  L +     + + GL  NAI GF  ML  +L   +  
Sbjct: 1   MTNKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E++ +
Sbjct: 57  --PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114

Query: 116 EADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           EADDII T    AE   E F +T++S DKDL+QL    T +  + K     E+    +++
Sbjct: 115 EADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K GI P + + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N   +KQ K 
Sbjct: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKM 234

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           +EN++   E A LS+ L  +    PITI LE ++    +GP+ I  L
Sbjct: 235 KENLINDKEQAFLSKTLATINIASPITIGLEDIL---YSGPQDIKAL 278


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 177/521 (33%), Positives = 295/521 (56%), Gaps = 28/521 (5%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517
           HF+ IGHN+KYD K++ + + +++ + + D M+++++ + S R + D   +A +  +Y  
Sbjct: 378 HFV-IGHNLKYDFKIIQNNFNLTLPQEYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  K       +   +  ++A E++ + L+ +L     L    LL + +  +   I
Sbjct: 435 LHFESLVKKGENFTSVELEKACKYAAEDAYITLRFYLYFLKNLET-PLLELAKTCEFDFI 493

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++  +E  GI++D + L+ +  +    + +L E IY L  ++FNL+SPKQ+GDILF KL
Sbjct: 494 KIIMMIEENGIKLDTNALEILMKKFENEIKNLSEEIYILCEDRFNLNSPKQVGDILFEKL 553

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696
           K PSG K KTG + T  + L  +    +P+I  IL++R+L+K+ STY + L    +  + 
Sbjct: 554 KLPSGKKGKTG-YSTDEKVLNAL-LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKN 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+++ +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR
Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKNYKSCFVAKEGFSFISLDYSQIELR 671

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    
Sbjct: 672 MLAHFSEDEKLLNAFANDEDIHVRTAMMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L+I  S A  YI++YF  F  I +Y EK KN  +QNG++ T+ GR+ ++D  N+  
Sbjct: 728 LSQNLKIEASLAKSYIEKYFENFTSIKKYFEKIKNEAKQNGFITTLSGRKRYFDFENAKP 787

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-- 934
             I  + ER +IN+ +QGSAAD+ + AM+ ++K L + K   K++LQIHDEL+FEV +  
Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDKL 843

Query: 935 -EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E     ++ I+ ++       + L+V LK +  ++ NW +
Sbjct: 844 CENFVKKTRDIMENI-------VKLKVKLKTSSSIAKNWGD 877



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 6/261 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA   L +   G     I+GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLYYALKGL-KNSQGQASGMISGFANFIYSL----KNEHKSDYIIFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++  
Sbjct: 59  SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           I + +   V II+ DKDL QL+    T +Y  + +   +    ++K+G+ P ++    AL
Sbjct: 119 ICKDKDIFVRIITQDKDLYQLIKDGKTDIYSPISKNNYNEAACLEKYGVKPCQIRDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS+K
Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERNRTLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPITIPLEHLILED 266
           L  L  ++ +   +E  I  D
Sbjct: 239 LASLYENLEVQNLIEKAIYPD 259


>gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/392 (39%), Positives = 239/392 (60%), Gaps = 9/392 (2%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   EE  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 503 MERAGIAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ + P +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTTYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 244 RNRKLNALVRDLDLDVTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 304 EVDDTLEISGT 314


>gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/392 (39%), Positives = 239/392 (60%), Gaps = 9/392 (2%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D D+ + + +E  + +   EE  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 503 MERAGIAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ + P +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 244 RNRKLNALVRDLDLDVTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 304 EVDDTLEISGT 314


>gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
          Length = 952

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 174/550 (31%), Positives = 294/550 (53%), Gaps = 25/550 (4%)

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486
           +IDL+    QD+  +N L          +  +    K+ H  K     L   G+ + G  
Sbjct: 418 YIDLA---GQDAESENVLAG--------WLRDPESPKVLHGFKAALKALTSRGLELEGVV 466

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           +D  +  Y++   R ++++A +AQ  L+    +   K+ +  +  D   D    +  +++
Sbjct: 467 DDTSISGYLIQPDRRTYELAELAQHHLNVGIPQATAKAGQLELSFDG-EDEAAADALVQS 525

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           + V+  L      +L   +   +   L+ P+  V++ ME+ GI ID   +    A++++ 
Sbjct: 526 AAVVQALSRYFEGELKERRAEELLSTLELPVSRVLADMELAGIGIDMARMDDQLADLARV 585

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCG 663
           +   +E  +   G + NL SPKQL  +LF +L+ P   K K+G + T A  L+ +    G
Sbjct: 586 IDQAQEQAFAAIGHEVNLGSPKQLQTVLFEELQLPKTKKIKSG-YTTDAASLKNLLEKTG 644

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
              +++ ++  R+ +K++    +SL   + +   R+HT Y+     TGR++S  PNLQNI
Sbjct: 645 HEFLVQ-LMAHREAAKLRQML-ESLKKSVAE-DGRIHTTYAQNVAATGRISSNNPNLQNI 701

Query: 724 PIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           PI+++ G+++R  F+     + L+SADYSQIE+RI+AH++    L Q +++  D+HR V 
Sbjct: 702 PIRSEEGRRVRGIFVVGEGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDGEDLHRFVG 761

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           + IF V  E+V+  MR   K +++ + YG++ F L+ QL I   EA   +K YF RF  +
Sbjct: 762 SNIFHVPAEEVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKEYFDRFGAV 821

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+    +  R +GY  TI GRR +  ++ S    +R   ER A+N+PIQGSAADI +R
Sbjct: 822 RDYLRGVVDQARVDGYTATIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAADIIKR 881

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ VH  L+   LA++MLLQ+HDELV EV   E     +++   M  A     +L VPL
Sbjct: 882 AMLGVHAELKAQGLASRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAAA----DLSVPL 937

Query: 963 KVNIKVSNNW 972
           +V I V  +W
Sbjct: 938 EVQIGVGPSW 947



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 157/311 (50%), Gaps = 26/311 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAF+A P       +G   NAI GF +ML  L+    KE   +H AV F
Sbjct: 65  LLVLDGHSMAFRAFFALPADKFSTANGQHTNAIHGFTSMLINLI----KEQQPTHVAVAF 120

Query: 66  DYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D     T R   Y +YK  R + P  +  Q+ L+    +A+GI  I + G+EADDI+AT 
Sbjct: 121 DVSDETTHRKTEYTEYKGGRNETPREMNNQIDLIAQVMEAWGIKTITMPGYEADDILATL 180

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
             + EK GF V +++ D+D  QL++       P   + D     ++D   +  K+ +PP 
Sbjct: 181 ATMGEKAGFEVLLVTGDRDAFQLINDNVFVLYPKKGVSDI---PRLDAAAIEAKYFVPPS 237

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENIL 234
           +   L AL G++ DN+PG+PG+G KTAA  +  YG L+ +L +   I  K     REN+ 
Sbjct: 238 RYSDLAALVGETADNLPGVPGVGPKTAAKWINLYGGLDGVLEHLDSIGGKVGDALRENV- 296

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY-- 292
              E  + +R+L  L TD+ + + L+ L     N   L      LEF  + +R+   Y  
Sbjct: 297 ---EAVKRNRRLNELHTDLALPVTLDDLYQPRPNQAALEDLFDKLEFKTIRSRLFALYGD 353

Query: 293 -DCDAANIEPV 302
            D  AA  E +
Sbjct: 354 EDSPAAERESI 364


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 180/516 (34%), Positives = 286/516 (55%), Gaps = 22/516 (4%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517
           HF+ IGHN+KYD  ++ + + ++  + + D M+++++ + S R + D   +A +   Y  
Sbjct: 378 HFI-IGHNLKYDFAIIENNFKLTPPKKYADTMILAWLYNPSLRVNMD--DLALRLFDYKT 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  K       +   +   +A E++ + L+ +L     L    LL +    +   I
Sbjct: 435 LHFESVVKKGENFASVELEKACNYAAEDAYITLRFYLYFLKNL-EPNLLKLGFESEFNFI 493

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           +V+ +ME  GI+++   L+ +  E  K +  L E IY L  +KFNL+SPKQ+GD+LF KL
Sbjct: 494 EVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEIYTLCDDKFNLNSPKQVGDVLFEKL 553

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696
           K PS  KTKTG + T  + LE +    +P++  IL +R+L+K+ STY + L    +    
Sbjct: 554 KLPSAKKTKTG-YSTDEKVLESL-IDKHPVVSKILAYRELAKLYSTYCEPLLKLALKDEN 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+++ +    T TGRL+S EPNLQNIP      +  +  FI+      IS DYSQIELR
Sbjct: 612 SRIYSSFLQTGTATGRLSSKEPNLQNIPAHGQYAKDYKSCFIAEDGFSFISLDYSQIELR 671

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH ++   L + F+N  DIH   A  IFG N    + + R  AK+INF +IYG+    
Sbjct: 672 MLAHFSEDEKLLEAFKNDEDIHARTAIMIFGEN----NYETRSVAKSINFGLIYGMGYKT 727

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L+I  S A  YI++YF  F  I  + EK KN  + NG++ T+ GR+ ++D  N+  
Sbjct: 728 LSQNLKIEASLAKTYIEKYFANFTSIKSFFEKVKNDAKINGFISTLSGRKRYFDFANAKP 787

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             +  + ER +IN+ +QGSAADI + AM+ ++K L+  K   +++LQIHDEL+FEV +E 
Sbjct: 788 MQVA-MYERESINSILQGSAADIIKLAMLELYKELDADK---RLILQIHDELIFEVKDEL 843

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                +     ME      + L+V LK +  ++ NW
Sbjct: 844 CEKFEKRARDIMENI----VKLKVNLKTSSSIAKNW 875



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 165/329 (50%), Gaps = 16/329 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R FYA     +   G P   ++GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLFYALKNF-KNSKGEPSGMVSGFANFIYSL----KNEYKSDYIIFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  +I  + +EADDIIA+   
Sbjct: 59  SKGKTFRSEIDPNYKTNRTPPPPELLAQIPICIKMIEKMGFVSISKEYYEADDIIASVVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               +   V II+ DKDL QL+      +Y  + +   D    ++K+G+ P ++    AL
Sbjct: 119 SCNDKDIFVRIITQDKDLYQLIKDGKVSIYSPISKNDYDEAACLEKYGVKPSQIKDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+GN+E I  N S ++ ++ +  +LE  E A LS+K
Sbjct: 179 CGDSADNIPGVKGIGAKGAKNLLDEFGNIEEIYENLSFVRNERSKNLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPITIPLEHLILEDCNGP--RLISFLKALEFTKLINRVATTYDCDAANI---E 300
           L  L  D+ +   +E  +      P  R++ +L+  E   L+ ++         N+    
Sbjct: 239 LASLYEDLDLEDLIEKSVYTQ-EEPLLRVLDYLERFELNSLLKKLKANPQNRNQNLGFKA 297

Query: 301 PVVLDINTTENKGIAIETE----IDRDTT 325
            ++LD NT  +K  ++E+E     D +TT
Sbjct: 298 TLILDENTLFDKLESLESESIIAFDTETT 326


>gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 694

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 174/521 (33%), Positives = 278/521 (53%), Gaps = 28/521 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +  S+ G   D  L +Y++  GR S D+ +++   L Y  +E+  
Sbjct: 187 KVLHNAKGAMRVFAEHDWSVAGVSMDTALAAYLVKPGRRSFDLDALS---LEYLGRELAP 243

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
              +   +   +D   +  A+   +  +L L      +L       +   ++ P   +++
Sbjct: 244 PAAADGQLAFGADDGAEAEALMVQARAVLDLGSAFEGRLAEVGAADLLRDMELPTSALLA 303

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI  D+  L+ +    +  +    +  +  +G +FNL SPKQL ++LF +L  P 
Sbjct: 304 RMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHGAAGHEFNLGSPKQLQEVLFGELGLPK 363

Query: 642 GAKTKTG--------QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
             KTKTG         W  T  D E       P+I  +L  R+ +K++ T  + L   I 
Sbjct: 364 TKKTKTGYTTDADALAWLATQTDNEL------PVI--MLRHREQAKLRVTV-EGLIKTIA 414

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQ 752
               R+HT ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQ
Sbjct: 415 A-DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQ 473

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELR++AH+++   L + F +  D+H   A+++F V    V  +MRR  K +++ + YG+
Sbjct: 474 IELRVMAHLSEDAGLIEAFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGLAYGL 533

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL I   EA   +  YF RF G+ +Y+ +  +  R  GY  T+FGRR +  ++
Sbjct: 534 SAFGLSQQLNIEAGEARALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRYLPDL 593

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           NS     R   ER A+NAPIQG+AADI + AM+ V  +L D  LA++MLLQ+HDE+V EV
Sbjct: 594 NSDNRQRREAAERMALNAPIQGTAADIVKIAMLKVDGALRDAGLASRMLLQVHDEIVLEV 653

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              E   A +I+   M  A    ++LRVPL V++   ++W+
Sbjct: 654 APGERGVAEEIVRREMSDA----VDLRVPLGVSVGDGSDWE 690


>gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 906

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 170/520 (32%), Positives = 279/520 (53%), Gaps = 27/520 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G S+ G   D  L +Y++  GR S  +  ++   + Y  +E+  
Sbjct: 400 KVVHNAKGLMRVFPEHGWSLAGVAMDTALAAYLVKPGRRSFALDVLS---MEYLHRELQP 456

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           + +         D+   E  +  +  +L L      +L       +   ++ P  +++++
Sbjct: 457 AAQDGQLAFGSDDTAEAEALMAQARAVLDLGDAFTGRLAEVGAAELLHEMELPTSELLAR 516

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI  D+D L+ +  + +  +    +  +   G +FNL SPKQL ++ F +L  P  
Sbjct: 517 MERAGIAADRDHLEAMEQQFAGAVQQAVKEAHAAVGHEFNLGSPKQLQEVFFGELDLPKT 576

Query: 643 AKTKTGQ--------WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            KTKTG         W  T  D E       P+I  +L  R+ +K++ T  + L   I  
Sbjct: 577 KKTKTGYTTDADALAWLATQTDHEL------PVI--MLRHREQAKLRVTV-EGLVKTIGA 627

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
              RVHT +S     TGRL+S +PNLQN+P++TD G+ IRR F+     + L++ADYSQI
Sbjct: 628 -DGRVHTSFSQIVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLMTADYSQI 686

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR++AH+++   L + F +  D+H  VA+++FGV   +V P+MRR  K +++ + YG+S
Sbjct: 687 ELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVFGVERGEVDPEMRRKIKAMSYGLAYGLS 746

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F L+ QL I   EA   ++ +F RF G+ +Y+++     R  GY +T+ GRR +  ++N
Sbjct: 747 AFGLSQQLNIDPGEARGLMETFFERFGGVRDYLQRVVEEARATGYTQTVLGRRRYLPDLN 806

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S     R   ER A+NAPIQG+AADI + AM+ V K++ +  L ++MLLQ+HDE+V E+ 
Sbjct: 807 SDNRMRREAAERMALNAPIQGTAADIVKVAMLRVDKAITEAGLKSRMLLQVHDEIVLEIA 866

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             E     +++   M  A    + LR PL V++ V  +W+
Sbjct: 867 PGERKKVEELVRREMGAA----VELRAPLDVSVGVGPDWE 902



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/254 (39%), Positives = 144/254 (56%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 20  LMLMDGHSLAYRAFFALPAENFTTAGGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 75

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+  +P+YKANR K P+    Q+ L+     A  +P   + GFEADD+IAT  
Sbjct: 76  DVSRKTWRSTEFPEYKANRSKTPDEFKGQVELIGELLDAMSVPRFAVDGFEADDVIATLA 135

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QLVS  TT LY T  V E  +   E V +K+G+ P++   
Sbjct: 136 TQAEALGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVEEKYGLTPQQYPD 195

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ E  +
Sbjct: 196 FAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 254

Query: 242 LSRKLVMLRTDVPI 255
           L+R L  +  DV +
Sbjct: 255 LNRVLTEMVKDVEL 268


>gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032]
 gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032]
          Length = 899

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 177/526 (33%), Positives = 294/526 (55%), Gaps = 14/526 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L  +  +E   K+ H+ K   L    +G ++ G   D  + +Y+    + S+D+  +A +
Sbjct: 377 LAGWLADETRPKVLHDSKPAVLAFAAHGWTLAGIARDTQIAAYLARPDQRSYDLTDLALR 436

Query: 512 WLSYTRKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLI--VEKLLHV 568
           +L +    +       + +D +  D + +++ + ++   L L   +  +L    E+   +
Sbjct: 437 YL-HRELRVDVPDDGQLTLDGLGGDGEAEQNLMLHARATLDLADAIDAELSRDGEQSARL 495

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
              ++ P++ V++ ME  GI  D D L ++ A  +  + +  +  Y + G +FNL SPKQ
Sbjct: 496 MAGVELPLMRVLAGMERVGIAADTDYLSELEAHFAAEVKAAAQAAYAVIGREFNLGSPKQ 555

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADS 687
           L +ILF +L  P   K KTG + T A  L+ +    ++P++ ++L  R ++++KST  D 
Sbjct: 556 LQEILFGELNLPKTKKIKTG-YTTDADALQWLYAQTEHPLLHHLLRHRDVARLKST-VDG 613

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   ++    R+HT ++     TGRL+S EPNLQNIPI+T+ G++IRRAF+     + L+
Sbjct: 614 LLKSVSD-DGRIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEGYECLL 672

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQIE+RI+AH++    L + F +  D H   A+ +F V + +V+P  RR  K +N+
Sbjct: 673 TADYSQIEMRIMAHLSGDEALIEAFNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNY 732

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            + YG+S F L+ QL I   EA   ++ YF  F G+ +Y+++     RQ+GY  TI GRR
Sbjct: 733 GLAYGLSAFGLSQQLGITAEEARGLMEVYFAGFGGVRDYLQEVVARARQDGYTSTILGRR 792

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  ++ S     R + ER A+NAPIQGSAADI + AM+ V  +L D  L ++MLLQ+HD
Sbjct: 793 RYLPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHD 852

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ELVFEV   E  T  +++   M  A      L VPL+V++    +W
Sbjct: 853 ELVFEVAPGERATLEELVRREMGGA----YPLSVPLEVSVGEGRDW 894



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 124/226 (54%), Gaps = 9/226 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H  V F
Sbjct: 8   LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THIVVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR E Y +YKA R + P     Q+ LV+    A  IP +E +G+EADDIIAT  
Sbjct: 64  DVSRRSFRTEKYAEYKAGRSETPTDFKGQVSLVKEVLAALRIPVVEKEGYEADDIIATLA 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  +G  V I + D+D  QLV    T LY         ++D   V  K+G+ P +   
Sbjct: 124 CQARDQGMPVLISTGDRDAFQLVDEQITVLYPRKGVSDLARMDPAAVEAKYGVGPGRYRD 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           L AL G++ DN+PG+PG+G KTAA  +  YG +E I+  A  IK K
Sbjct: 184 LAALVGETSDNLPGVPGVGPKTAAKWINTYGGVEGIIARADEIKGK 229


>gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
 gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
          Length = 903

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 170/513 (33%), Positives = 280/513 (54%), Gaps = 12/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G  + G   D  L +Y++  GR S  + ++A ++L    +E+  
Sbjct: 396 KVLHNAKNVMRVFPEHGWRLEGVTMDTALAAYLVKPGRRSFALDALAVEYLG---RELAP 452

Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +  S   +   +D + ++ A+   +  +L L      +L       +   ++ P   +++
Sbjct: 453 AAASDGQLAFGADDRAEQDALMAQARAVLDLGDAFTTRLKEVGAAELLHDMELPTSILLA 512

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++E  GI  D+  L+ +  + +  +    +  +   G +FNL SPKQL +ILF +L  P 
Sbjct: 513 RLERHGIAADRAHLEGMEQQFAGTVQQAVKEAHAAVGREFNLGSPKQLQEILFGELGLPK 572

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               ++ +   +L  R+ +K++ T  + L   I     R+HT
Sbjct: 573 TKKTKTGYTTDADALAWLAAQTEHELPVLMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 630

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 631 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAH 690

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H  VA+++FGV  + V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 750

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I  +EA   +  YF RF G+ +Y+ +     R  GY ETI GRR +  ++NS     R
Sbjct: 751 LNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRR 810

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM+ V K+L + KL ++MLLQ+HDE+V E+ + E    
Sbjct: 811 EAAERMALNAPIQGTAADIVKVAMLRVDKALTEAKLTSRMLLQVHDEIVLEIAKGERKQV 870

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +I+ H M  A    + LR PL V++ V  +W+
Sbjct: 871 EEILRHEMANA----VELRAPLDVSVGVGKDWE 899



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 142/254 (55%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NA+ GF +ML     N+ ++   +HFAV F
Sbjct: 16  LLLMDGHSLAYRAFFALPAENFTTAVGQPTNAVYGFMSML----ANTLRDEAPTHFAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R + +P+YKANR K P+    Q+ L+     A       + GFEADD+IAT  
Sbjct: 72  DVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMRADRFAVDGFEADDVIATLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QL++   T LY T  V E  +   E V++K+G+ P++   
Sbjct: 132 TQAEAAGFEVLIVTGDRDSFQLITENVTVLYPTKGVSELTRFTPEKVVEKYGLTPQQYPD 191

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ +  +
Sbjct: 192 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERAEEVKGKA-GQNFRDHLDAVK 250

Query: 242 LSRKLVMLRTDVPI 255
           ++R L  +  DV +
Sbjct: 251 MNRVLTEMVRDVEL 264


>gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
 gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
          Length = 798

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 163/422 (38%), Positives = 238/422 (56%), Gaps = 11/422 (2%)

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           + KL    LL VY  ++ P+   + +ME  GI  D+D++ +V+ ++   +  + E I   
Sbjct: 382 KDKLKANGLLEVYLGMELPVAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKIKTF 441

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE--- 673
            G   NL+SPKQL   LF +L      KTKTG + T  + L  +    NP+  ++LE   
Sbjct: 442 VGYDINLNSPKQLQVFLFEELGVEGLKKTKTG-FSTDEESLRAM-IPMNPLYAHVLEDIL 499

Query: 674 -WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
            +R+L+K+ STYA  L +++     R+H+ +    T TGRL+S+ PN+QNIP+K   G K
Sbjct: 500 VYRELAKLLSTYALPLKDYV-LADGRIHSSFRQTGTATGRLSSVNPNMQNIPMKGKWGVK 558

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R AFI       +S DYSQIELRILAH+     L + + N+ DIH   A+ IFGV  EK
Sbjct: 559 LREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNEDIHTKTASGIFGVAPEK 618

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           V   MRR AK +NF I+YG+SPF L+    + + EA  +I++YF  +P +  +IEK    
Sbjct: 619 VDSGMRRLAKAVNFGILYGLSPFGLSRDTGVSQKEAKKFIEKYFATYPKVKGFIEKIAKE 678

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
            ++ GY ET+ GR+    EI S   ++    ER A N P+QGSAADI + AM+     L+
Sbjct: 679 TKEKGYAETLAGRKRFIREIRSKNRTVAMRGERIATNVPMQGSAADIIKLAMVECQAVLD 738

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           D +    ++LQ+HDELVFEV +++I   S  +   ME      + L VPL VN     N 
Sbjct: 739 DKEYDALVVLQVHDELVFEVLDKDIDEFSDRVRSIMEGV----MELDVPLVVNGAAGKNL 794

Query: 973 QE 974
            E
Sbjct: 795 GE 796



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 164/295 (55%), Gaps = 16/295 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DGS   +R ++ +P L+    G+P + I G    +  L+    +E+IA    V+FD  
Sbjct: 4   VIDGSYIAFRTYHKSPPLTNSA-GVPTSVIHGVMQSIITLINKYGRENIA----VVFDAK 58

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R+EI+P+YKA R   PE L  Q  ++       G+   ++ G+E DDI+AT   IA
Sbjct: 59  GKNRRHEIHPEYKATRDATPEDLGLQFGIMDELIPLLGVAYYKVDGYEGDDIMAT---IA 115

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
                 V +++ DKD+ Q+V     +YD+ K E    + VI+K+G+PPEK+  L AL GD
Sbjct: 116 AHTKDDVGMLTKDKDIYQIVDDRVKIYDSQKGEFFGRDMVIEKFGVPPEKVRELLALAGD 175

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + DNIPG+ G+G KTAA LL E+G+L+ I  N   +K  K ++ +++  ++A LS  LV 
Sbjct: 176 TADNIPGVAGVGVKTAAKLLNEHGSLDGIYENIESVKG-KLKDKLIDNKDSAYLSYDLVG 234

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           L  D+  +IP   ++ +D    +L   L  LE   + +++    D D+ +++P V
Sbjct: 235 L--DILESIPDVEIVKDD---KKLSEKLTELELKTIQSKLFA--DSDSEDVQPDV 282


>gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC]
 gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC]
          Length = 869

 Score =  280 bits (717), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 201/629 (31%), Positives = 333/629 (52%), Gaps = 27/629 (4%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD------TMDAFHSKPIAIA 410
           K   Y  + +        +  +  VQ++E   S   +II +       +   H K +A +
Sbjct: 256 KFPLYEAHQEELNAFYMRQGFKTLVQQVEEASSVDVEIINNNKQLAHVLSTLHGKSVAFS 315

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           +         SF      + +++ +  D           ++L+ L+ FF  E     G+N
Sbjct: 316 VGY-----KGSFLPSLTLMGVALASDDDVYYVDIEHALDDVLTPLQYFFRREDTTFYGYN 370

Query: 469 IKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG-RSSHDIASIAQKWLSYTRKEILKSRKS 526
           IK D   L   GI +     D+ L  ++++ G + S+    +    +S   +   +  + 
Sbjct: 371 IKRDNHALKNAGIHVHNIALDLALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKEWGQL 430

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           S+PI K   +  Q      S+ + ++   L  +L ++ +  ++  ++ P+  V+  +E  
Sbjct: 431 SLPIAKSPANPAQYFGGFVSH-LPKIKKSLLEELKIKGVEDLFFNMEMPLEKVLFTIERN 489

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ +D + L+++   +S+ L  L ++IY L+G  FN+ SPKQL ++L+ KL      K +
Sbjct: 490 GMPLDVEDLQELERILSEELAMLTDDIYTLAGAPFNIKSPKQLSEVLYNKLGLKPIDKAR 549

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +    T A+ LE ++ G++ II+ IL +R + K+ STY  +LP  ++  T R+H  ++  
Sbjct: 550 S----TKAEVLEALS-GEHEIIEKILAFRAVEKLLSTYVKALPRQVDPSTSRIHPTFNQM 604

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKIT 765
            T+TGRLA  +PNLQNIPI+++ G+ +R+AF +       +SADYSQIELR LAH+++  
Sbjct: 605 GTVTGRLACQDPNLQNIPIRSERGRLLRKAFCNTHQNNYFLSADYSQIELRFLAHLSQDE 664

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   FE+  DIH   A+++F V +E+V+ Q R  AKT+NF IIYG   + L+  L+I  
Sbjct: 665 SLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQAKTVNFGIIYGQQAYGLSKILKISV 724

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           SEA   I  YF R+P +  +I +T +   +N  V+T+ GR    D      +S R  + R
Sbjct: 725 SEAQKLIDAYFDRYPEVARFINETVSQACENLRVKTLLGRERIIDNWTEFSNS-RAASGR 783

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N  IQGSAA++ + AM+ +  +LE  KL ++MLLQIHDEL+FEVPEEE      ++ 
Sbjct: 784 LAVNTRIQGSAAELIKLAMLQLSDALEKRKLKSRMLLQIHDELIFEVPEEEKEEMQTLVR 843

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME A +    L VPL VNI +  NW E
Sbjct: 844 DIMESAMI----LSVPLVVNILIGKNWAE 868



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 160/298 (53%), Gaps = 12/298 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +F++D S F++RA++A P + +   G    A+ GF   + KL+    KE   SH   +FD
Sbjct: 4   IFILDASGFVFRAYFALPDM-KNSSGEGTQAVFGFIRSINKLI----KEFSPSHMVAVFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R EIY DYK+NR +  E L  Q+P+V+      G+  +E++G EADD+IA+ T
Sbjct: 59  GPNNKQSRREIYADYKSNREQKEENLYQQIPVVKEYCSLLGLSYLEVEGVEADDVIASAT 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQA 184
             A  EG+ V I + DKDL+QLV P     +  K++ +ID   VI  +GIPP  +    A
Sbjct: 119 RQAVSEGYQVCICTADKDLLQLVGPNVVALNPWKDQPEIDENRVIDIYGIPPTGISDYLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPG+ G G K A  LLQ+Y ++E IL N   +     +  + E  +   LS+
Sbjct: 179 LVGDTSDNIPGVSGCGPKKATALLQKYHSVEGILENLDELTGSTHK-MLSEQKDVLLLSK 237

Query: 245 KLVMLRTDVPITIPLEHLI--LEDCNGPRLISFLKALEFTKLINRV--ATTYDCDAAN 298
            L +L   +P+   ++ L   L + +   L +F     F  L+ +V  A++ D +  N
Sbjct: 238 SLAVLNDAIPLPKRIDELKFPLYEAHQEELNAFYMRQGFKTLVQQVEEASSVDVEIIN 295


>gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
          Length = 879

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 177/518 (34%), Positives = 289/518 (55%), Gaps = 22/518 (4%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517
           HF+ IGHN+KYD K++ + +G+++ + + D M+++++ + S R + D   +A +  +Y  
Sbjct: 378 HFV-IGHNLKYDFKIIQNNFGLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  K       +   +  ++A E++ + L+ +L     L    LL + +  +   I
Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLEA-PLLELAKNCEFDFI 493

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++  ME  GI++D + L+ +  +    + +L E IY L  ++FNL+SPKQ+GDILF KL
Sbjct: 494 RIIMMMEENGIKLDTNALEALMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKL 553

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696
           K PSG K KTG + T  + L  +    +PII  IL++R+L+K+ STY + L    +  + 
Sbjct: 554 KLPSGKKGKTG-YSTDEKVLNAL-LDKHPIIPKILDYRELAKLYSTYCEPLLKLALKDKN 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+++ +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR
Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    
Sbjct: 672 MLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L+I    A  YI++YF  F  I +Y E  KN  +QNG++ T+  R+ ++D  N+  
Sbjct: 728 LSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNEAKQNGFITTLNSRKRYFDFENAKP 787

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             I  + ER +IN+ +QGSAAD+ + AM+ + K L + K   K++LQIHDEL+FEV ++ 
Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEIDKELNEDK---KLILQIHDELIFEVKDDL 843

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +     ME      + L+V LK +  ++ NW +
Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 162/328 (49%), Gaps = 20/328 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++  
Sbjct: 59  SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSREGYEADDIIASFVR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    AL
Sbjct: 119 TCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPHQIRDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS+K
Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           L  L  ++ +       T P E  +L      +++  L+  E   L+ ++    D    N
Sbjct: 239 LASLYENLEVQDLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTI 326
           +      I   ENK   I   +D+++ I
Sbjct: 293 LGFKATLIQ-DENKLFEILNTLDKESII 319


>gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 903

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 170/513 (33%), Positives = 280/513 (54%), Gaps = 12/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G  + G   D  L +Y++  GR S  + ++A ++L    +E+  
Sbjct: 396 KVLHNAKNVMRVFPEHGWRLEGVTMDTALAAYLVKPGRRSFALDALAVEYLG---RELAP 452

Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +  S   +   +D + ++ A+   +  +L L      +L       +   ++ P   +++
Sbjct: 453 AAASDGQLAFGADDRAEQDALMAQARAVLDLGDAFTTRLKEVGAAELLHDMELPTSILLA 512

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++E  GI  D+  L+ +  + +  +    +  +   G +FNL SPKQL +ILF +L  P 
Sbjct: 513 RLERHGIAADRAHLEGMEQQFAGTVQQAVKEAHAAVGREFNLGSPKQLQEILFGELGLPK 572

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               ++ +   +L  R+ +K++ T  + L   I     R+HT
Sbjct: 573 TKKTKTGYTTDADALAWLAAQTEHELPVLMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 630

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 631 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAH 690

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H  VA+++FGV  + V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 750

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I  +EA   +  YF RF G+ +Y+ +     R  GY ETI GRR +  ++NS     R
Sbjct: 751 LNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRR 810

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM+ V K+L + KL ++MLLQ+HDE+V E+ + E    
Sbjct: 811 EAAERMALNAPIQGTAADIVKVAMLRVDKALTEAKLTSRMLLQVHDEIVLEIAKGERQQV 870

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +I+ H M  A    + LR PL V++ V  +W+
Sbjct: 871 EEILRHEMANA----VELRAPLDVSVGVGKDWE 899



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 142/254 (55%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NA+ GF +ML     N+ ++   +HFAV F
Sbjct: 16  LLLMDGHSLAYRAFFALPAENFTTAVGQPTNAVYGFMSML----ANTLRDEAPTHFAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R + +P+YKANR K P+    Q+ L+     A       + GFEADD+IAT  
Sbjct: 72  DVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMHADRFAVDGFEADDVIATLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QL++   T LY T  V E  +   E V++K+G+ P++   
Sbjct: 132 TQAEAAGFEVLIVTGDRDSFQLITENVTVLYPTKGVSELTRFTPEKVVEKYGLTPQQYPD 191

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ +  +
Sbjct: 192 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERAEEVKGKA-GQNFRDHLDAVK 250

Query: 242 LSRKLVMLRTDVPI 255
           ++R L  +  DV +
Sbjct: 251 MNRVLTEMVRDVEL 264


>gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
 gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
          Length = 861

 Score =  280 bits (716), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 189/506 (37%), Positives = 282/506 (55%), Gaps = 38/506 (7%)

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           GI+ + + DI+L S+ L + +S   + ++A   L  + +EI K       ++K   +   
Sbjct: 377 GINFKNYFDILLASFTLGTDKSQK-LETMAFDKLGLSIEEIDKK-----ILNKFDATSFI 430

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD-----KPMIDVVSQMEITGIQIDQDL 594
           E+    + +I   + + + K +   LL    +LD     K   DV+  ME  GI I+Q+ 
Sbjct: 431 EY--RKNRLITMTYAIFKLKEVFMDLLEKENQLDIYLEEKEFTDVLIYMEKQGIAINQNY 488

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
            ++ + E+ K +  +E  IY  SGE FN+SSPKQLG++LF  +      K K G + T A
Sbjct: 489 FEKYNLELEKKIKDIENKIYIESGESFNISSPKQLGEVLFETMGIEGVKKNKRG-YSTDA 547

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRL 713
           + LE +      I + +LE+R+L K+KSTY + L    IN    R+HT Y+   T TGRL
Sbjct: 548 EVLELLRDRGIKIAELLLEYRELVKLKSTYVEPLLKLSIN---GRIHTTYNQTGTATGRL 604

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S  PNLQNIP +T  G KIR  FI+    KL+S DYSQIELR+LA I+K   L   +++
Sbjct: 605 SSSNPNLQNIPTRTYEGTKIREGFIASKGMKLVSFDYSQIELRVLAEISKDENLINAYKH 664

Query: 774 SLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +LD+H + A +IF + + EKVS   R  AK INFS++YG +PF L+ +L+I  S+A  YI
Sbjct: 665 NLDLHELTARKIFMLKDDEKVSKTQRNIAKVINFSVLYGKTPFGLSKELKITVSDAKLYI 724

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P +   ++      +++GYVET FG R +  +INS   +I+   +R A+N  I
Sbjct: 725 NTYFKEYPKVRILLDDIIEKAKKDGYVETKFGTRRYVYDINSSNINIKEQAKRMAVNTVI 784

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-----EEITTASQ-IIVH 946
           QG+AA+I ++ M  ++  L +  +  KMLLQ+HDEL+FEV E     EEI    Q  IV 
Sbjct: 785 QGTAANIIKKVMKEIYDKLCNDNV--KMLLQVHDELIFEVREDINIFEEIRDIMQNTIVF 842

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972
                        V LKVN    +NW
Sbjct: 843 D-----------DVVLKVNGSEGDNW 857



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 176/353 (49%), Gaps = 40/353 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++D S+ +YRA++A  +  R  +G PV A+ GF   L   L     E + +   V   
Sbjct: 4   ILILDTSAIMYRAYFAL-MNFRNSNGEPVGAMLGFIKQLELALSYFSPEYVIAAKDV--- 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A   R EIY +YK NR  +P+ L+ QL  +    + +GIP I+I  +EADD+IA+ + 
Sbjct: 60  KRAELKRREIYKEYKENRSGMPDELVMQLDAIDGILEGYGIPIIKIPSYEADDVIASISK 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KI--DIEHVIKKWGIPPEKM 179
              K+ + + I++ DKDL QL++P T +    K++     KI  + E VI+  G+   ++
Sbjct: 120 KYSKD-YEIIILTGDKDLAQLINPNTSIALLGKKDENEPYKIIENDEDVIEYLGVKSYQI 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L  L GDS D IPG+ GIG KT A L+ EY N++NI  N   IK   +++ I+   + 
Sbjct: 179 KDLFGLIGDSSDGIPGVLGIGPKTGAKLIAEYDNIDNIYANIDNIKGALQKK-IIASKDL 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +SR+L  +  ++ I + +E             + +K  +F KL + +   Y+      
Sbjct: 238 AYISRELATVFDELDIDLNIED------------AKIKEKDFDKL-SEIYLKYEL-RKEY 283

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           E +V D             +   D  I   ++ SL+D  +KINS      ++L
Sbjct: 284 EKLVKD-------------KPKMDLKINEIEYPSLNDFITKINSVNEEISIYL 323


>gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 170/500 (34%), Positives = 281/500 (56%), Gaps = 18/500 (3%)

Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           ++ RG+E      D  L SY+L   R +H      +  L+    E+  +   ++ +D   
Sbjct: 398 LAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAM-LDFGE 456

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D   +  ++E +  + +L  ++  ++       +   ++  +   +  ME  GI  D D+
Sbjct: 457 DHFAE--SMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAADMDI 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
            + + +E  + +   EE  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G + T A
Sbjct: 515 FEGLRSEFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSG-YTTDA 573

Query: 655 QDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             L  +    ++P + ++LE R   K++ T  D L   I +   RVHT Y     +TGRL
Sbjct: 574 DALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHTTYMQTVAVTGRL 631

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F+
Sbjct: 632 SSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQ 691

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +
Sbjct: 692 SGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELM 751

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPI
Sbjct: 752 ADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPI 811

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A 
Sbjct: 812 QGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHA- 870

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              ++L VPL V+I V  +W
Sbjct: 871 ---MDLSVPLTVSIGVGRSW 887



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ + P +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 244 RNRKLNALVRDLDLDVTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 304 EVDDTLEISGT 314


>gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
 gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
          Length = 1102

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 173/512 (33%), Positives = 278/512 (54%), Gaps = 13/512 (2%)

Query: 465  IGHNIKYD-KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
            IGHNIK+D  +  H +GI  +   +D ML+++ LD    S  + ++ +K  ++       
Sbjct: 600  IGHNIKFDLHIAWHNFGIKPKHTPQDSMLLAW-LDDPSQSVSLDNLMKKHFNHNMIAFSD 658

Query: 523  SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                    D I       +A E++    QL+   +  L    L  + + L+ P I  +  
Sbjct: 659  IVPKKATFDSIDIKTASNYAAEDAAATFQLYFYFKNTL-YPHLFTLAKDLEFPFIRTLCA 717

Query: 583  MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
            ME  GI I+    K +    S  L  L++ IY+ +G  FNL+SPKQ+ +ILF  LK  + 
Sbjct: 718  MEDCGIAINYSYFKNLKTTFSHTLQQLQQEIYEKAGVSFNLNSPKQVAEILFDTLKLDTK 777

Query: 643  AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
             K K+G + T    L  +    +P++  +LE+R++ K+ STY + +   + K   R++T 
Sbjct: 778  RKGKSG-YSTDEATLLALK-DSHPVVPLLLEYREIFKLFSTYIEPILK-LGKNENRIYTT 834

Query: 703  YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
            +    T TGRL+S  PNLQNIP+++++G+ IR+ F+S    KL+S DYSQIELR+LAH +
Sbjct: 835  FLQTGTNTGRLSSKSPNLQNIPVRSEMGRSIRKGFVSRDGYKLLSLDYSQIELRLLAHFS 894

Query: 763  KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
                L + F N+ DIH   A  +F  + +  S  +R  AK+INF +IYG+   +L+  L 
Sbjct: 895  GDKVLLESFHNNADIHAETAKLLFKDSNKDFS-LLRSIAKSINFGLIYGMGARKLSQTLN 953

Query: 823  IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
            I ++EA  YI+ YF  FP + +++E  K+ + +NGY  T+ GR+ ++D   S    +R  
Sbjct: 954  ITQTEAKQYIEDYFATFPSVKQFLESQKDSILKNGYSSTLLGRKRYFD-FFSATEFMRAN 1012

Query: 883  NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
              R  +N   QGSAAD+ + +M  ++K +E       MLLQ+HDEL+FE+ +  I + S+
Sbjct: 1013 FLREGVNTIFQGSAADLIKLSMNEIYKKIESLDNDCFMLLQVHDELIFEIKDSIIESLSK 1072

Query: 943  IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +   ME        L+VPL  N+ + N W E
Sbjct: 1073 ELKEIMENI----YKLKVPLVCNLSIGNTWAE 1100



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 139/253 (54%), Gaps = 14/253 (5%)

Query: 9   LVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
           LVD   F +R++YA P L + KH   P + + GF  +++ L     KE   S      + 
Sbjct: 10  LVDTFGFFFRSYYALPPLHNSKH--FPTSLLTGFATLIFNLY----KEHKDSCIIFTLEG 63

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R E YP YKANR + P+ LL QLP+     +  G+P + +QG+EADD IAT   +
Sbjct: 64  GGTNRRKEFYPQYKANRKESPQDLLAQLPVAIEWLEKMGLPTLSLQGYEADDCIATLATL 123

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           A+K+G+   IIS DKDL QL+S    ++D  K++ I  +   +K+G+ P   +  Q++ G
Sbjct: 124 AKKDGYETQIISHDKDLYQLISEGIYIFDYAKKQAITQKECYEKFGVLPNDFIMYQSIVG 183

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENI-------LINASRIKQKKRRENILEYAETA 240
           DS DN+PGI GIG K A  +L  + +LE++         N   +  K+    I E+ E A
Sbjct: 184 DSSDNVPGIKGIGPKGAQSILAHFKSLESLYESIEKDYENIVSLLGKRTAGLIKEHKEQA 243

Query: 241 RLSRKLVMLRTDV 253
            +SR LV LRTD+
Sbjct: 244 FISRNLVTLRTDL 256


>gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 889

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 168/513 (32%), Positives = 278/513 (54%), Gaps = 12/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K    VL  +G S+ G   D  L +Y++  GR S  + +++   L Y  +E+  
Sbjct: 382 KVFHDAKGAMRVLAEHGWSVDGVRMDTALAAYLVKPGRRSFALDALS---LEYLHRELAP 438

Query: 523 SRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +  +   +   +D   + E  +  +  IL L  +   +L       +   ++ P   +++
Sbjct: 439 AAAADGQLAFGADEAAEAEMLMIQARSILDLGEVFEGRLEEVGAADLLRDMELPTSALLA 498

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI  D+  L+ +    +  +    +  +  +G +FNL SPKQL ++LF +L  P 
Sbjct: 499 RMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPK 558

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               DN +   +L  R+ +K++ T  + L   I     R+HT
Sbjct: 559 TKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 616

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 617 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAH 676

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H   A+++FGV+   V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 677 LSEDAGLIEAFTSGEDLHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 736

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I  +EA   +  YF RF G+ +Y+ +  +  R  GY  T+FGRR +  ++NS     R
Sbjct: 737 LNIEAAEARALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRYLPDLNSDNRQRR 796

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM++V ++L +  L ++MLLQ+HDE+V E+   E    
Sbjct: 797 EAAERMALNAPIQGTAADIVKIAMLNVDRALREADLKSRMLLQVHDEIVLEIAPGERAAT 856

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +I+   M  A    + LR PL V++ V  +W+
Sbjct: 857 EEIVRREMSGA----VQLRAPLDVSVGVGPDWE 885



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/254 (39%), Positives = 147/254 (57%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           + L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 1   MMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEEPTHFAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E + +YKANR K P+    Q+ L+     A       ++GFEADDIIAT  
Sbjct: 57  DVSRKTWRSEEFTEYKANRSKTPDEFKGQVQLIGELLDAMHAERFAVEGFEADDIIATLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EGF V I++ D+D  QLVS  TT LY T  V E  +   E V++K+G+ P +   
Sbjct: 117 TRAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVVEKYGLTPAQYPD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N+ ++ E+ +
Sbjct: 177 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKA-GQNLRDHLESVK 235

Query: 242 LSRKLVMLRTDVPI 255
           L+R+L  L  +V +
Sbjct: 236 LNRRLTELERNVEL 249


>gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 537

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/390 (39%), Positives = 238/390 (61%), Gaps = 7/390 (1%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLD-SGRSS-HD 504
           +I + +     +    K+GH++K+ +++L R+ I + G   D ML SY+LD  G++  H+
Sbjct: 116 DIDAVMGPLLADPELPKVGHDVKFCEVILLRHRIGLVGVSFDTMLASYLLDPEGKNQLHE 175

Query: 505 IASIAQKWLSYTRKEILKSRKSSI--PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +A         T  E+   R+      +D+I   +   +    ++V L L   LRP+L V
Sbjct: 176 LAERELGAKMQTLDEVAPKRRGQAQRALDEIELGEASSYGAAFADVALSLTDRLRPRLRV 235

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           EKL  +  +++ P+  V+++ME+TG+ +D   L Q+ A+++  L +LE+   ++ G   N
Sbjct: 236 EKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREIVGHDIN 295

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           L+SPKQL  +LF +LK  S  KTKTG  ++T  D+ +    ++P    +LE R ++K+K 
Sbjct: 296 LASPKQLEAVLFDELKLRSQRKTKTG--RSTDADVLEALSEEHPFPGVVLEHRAIAKLKG 353

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  +N  T R+HT +  A   TGRL+S +PNLQNIPI+T+LG+ IRRAF++PP 
Sbjct: 354 TYVDALPRLVNPGTGRIHTRWGQAVAATGRLSSQDPNLQNIPIRTELGRMIRRAFVAPPG 413

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             ++SADYSQIELR+LAH++K   L   F    D+H   A EIFGV+   V+ +MRR +K
Sbjct: 414 SVIVSADYSQIELRVLAHLSKDPVLVDAFRAGQDVHVRTAMEIFGVDQAGVTAEMRRRSK 473

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYI 832
           TINF +IYG+    LA +L I R+EAA +I
Sbjct: 474 TINFGVIYGMGESALAKRLDISRAEAARFI 503


>gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 888

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 171/521 (32%), Positives = 279/521 (53%), Gaps = 28/521 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G ++ G   D  L +Y++  GR S D+ +++   L Y  +E+  
Sbjct: 381 KVFHNAKGAMRVFAEHGWTIEGVTMDTALAAYLVKPGRRSFDLDALS---LEYLHRELAP 437

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +      +   +D   +  A+   +  IL L      +L       +   ++ P   +++
Sbjct: 438 AAAPDGQLAFGADDGAEAEALMVQARAILDLGEAFEGRLAEVGAADLLRDMELPTSALLA 497

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI  D++ L+ +    +  +    +  +  +G +FNL SPKQL ++LF +L  P 
Sbjct: 498 RMERHGIAADREHLQAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPK 557

Query: 642 GAKTKTG--------QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
             KTKTG         W  T  D E       P+I  +L  R+ +K++ T  + L   I 
Sbjct: 558 TKKTKTGYTTDADALAWLATQTDNEL------PVI--MLRHREQAKLRVTV-EGLIKTIA 608

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQ 752
               R+HT ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQ
Sbjct: 609 A-DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQ 667

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELR++AH+++   L + F +  D+H   AA++F V    V  +MRR  K +++ + YG+
Sbjct: 668 IELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYGL 727

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL I  +EA   +  YF RF G+ +Y+ +  +  R  GY  T+FGRR +  ++
Sbjct: 728 SAFGLSQQLNIEAAEARALMDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRYLPDL 787

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           NS     R   ER A+NAPIQG+AADI + AM++V ++L +  L ++MLLQ+HDE+V E+
Sbjct: 788 NSDNRQRREAAERMALNAPIQGTAADIVKIAMLNVDRALREADLRSRMLLQVHDEIVLEL 847

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              E     +++   M  A    + LRVPL V++    +W+
Sbjct: 848 APGERAAVEELVRREMSTA----VELRVPLGVSVGAGPDWE 884



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 144/254 (56%), Gaps = 10/254 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV FD
Sbjct: 1   MLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDESPTHFAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T+R+E + +YKANR K P+    Q+ L+     A       ++GFEADD+IAT   
Sbjct: 57  VSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAQRFAVEGFEADDVIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVCL 182
            AE EGF V I++ D+D  QLVS  TT LY T  V E  +   E V +K+G+ P +    
Sbjct: 117 QAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+PGIPG+G KTAA  + ++G+   ++     +K K   +N+ ++ E+ +L
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKGKA-GQNLRDHLESVKL 235

Query: 243 SRKLVMLRTDVPIT 256
           +R+L  L   V ++
Sbjct: 236 NRRLTELERRVELS 249


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/392 (39%), Positives = 238/392 (60%), Gaps = 9/392 (2%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI  D D+ + + +E  + +   EE  ++ +GEK NLSSPKQL  +LF KL  P  
Sbjct: 521 MERAGIAADMDIFEGLRSEFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 580

Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +TK+G + T A  L  +    ++P + ++LE R   K++ T  D L   I +   RVHT
Sbjct: 581 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 637

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            Y     +TGRL+S +PNLQNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH
Sbjct: 638 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 697

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L   F++  D H + A+ +FGV  E VS   R   K +N+ + YG+S + L+ Q
Sbjct: 698 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 757

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L++   EA + +  YF RF  +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R
Sbjct: 758 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 817

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           ++ ERAA+NAPIQGSAAD+ + AM++  + L +  L +++LLQ+HDEL+ EV + E    
Sbjct: 818 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 877

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +I+ ++M  A    ++L VPL V+I V  +W
Sbjct: 878 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 905



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 13/311 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 27  LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 83  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+   T LY         ++  E V +K+ + P +   
Sbjct: 143 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K K   ++  ++ +   
Sbjct: 203 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298
            +RKL  L  D+ + + L  L     +     +    LEF  L +RV   AT  D D  +
Sbjct: 262 RNRKLNALVRDLDLDVTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 321

Query: 299 IEPVVLDINTT 309
                L+I+ T
Sbjct: 322 EVDDTLEISGT 332


>gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
 gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
          Length = 917

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 187/552 (33%), Positives = 297/552 (53%), Gaps = 42/552 (7%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE------DIMLMSYVLD 497
           TLT    + L  +  +    K  H  K+    +H  G+  RG+E      D  + +Y++ 
Sbjct: 384 TLTPHDEAALGAWLADATRPKAVHEAKW---AMH--GLESRGWELGGLTSDTAIAAYLVR 438

Query: 498 SGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            G+ S ++  ++ ++L    R E      + + +    D    E A +          +L
Sbjct: 439 PGQRSFNLDDLSVRYLHRELRVESAAGDDTQLSLLDDPDDSAAEKAQQQ---------IL 489

Query: 557 RPKLIVEKLLHVYERLDK------------PMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           R + +V+    + E L+K            P++ V+  ME TGI +D D L+ + ++ S 
Sbjct: 490 RARAVVDLAAALDEELEKIESKPLLEEMELPLLRVLGVMEATGIAVDTDHLESLHSDFSD 549

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            + + E   ++  GE+ NL SPKQL  ILF KL  P   KTKTG     A  LE +   +
Sbjct: 550 RIRAAEAAAFEEIGEQINLGSPKQLQVILFEKLGLPKTKKTKTGYTTDAAA-LEALYEKE 608

Query: 665 -NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P ++ +LE R  +++K T    L    +    R+H+ ++     TGRL+S +PNLQNI
Sbjct: 609 PHPFLQYLLEHRDATRLKVTVEGLLKAVASD--GRIHSTFNQTVAATGRLSSTDPNLQNI 666

Query: 724 PIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           P++T+ G++IR AF++    + L++ADYSQIE+RI+AH++    L + F    D+H  V 
Sbjct: 667 PVRTEAGRQIRHAFVAGEGYETLMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVG 726

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           A+ FGV I++V+P MRR  K +++ + YG+S F LA QL+I R EA D ++ YF RF G+
Sbjct: 727 AKAFGVPIDEVTPDMRRRVKAMSYGLAYGLSAFGLAAQLKISRDEAKDQMEAYFARFGGV 786

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y++       +N Y ETIFGRR +  ++ S     R   ER A+NAPIQGSAADI + 
Sbjct: 787 RDYLQDVVTEATRNEYTETIFGRRRYLPDLTSTNRMRRESAERMALNAPIQGSAADIIKV 846

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K +    L ++MLLQ+HDELV EV   E     +++  +M  A      L VPL
Sbjct: 847 AMINLDKQIRAAGLTSRMLLQVHDELVLEVAAGERDELEKLVRDTMGTAA----ELSVPL 902

Query: 963 KVNIKVSNNWQE 974
           +V++    +W +
Sbjct: 903 EVSVGYGRSWDD 914



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/294 (38%), Positives = 162/294 (55%), Gaps = 18/294 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L+DG S  +RAF+A PL     R   G P NA+ GF +ML KLL    KE    + A 
Sbjct: 26  MLLIDGHSMAFRAFFALPLDGGRFRTKSGQPTNAVYGFTSMLIKLL----KEEAPGYVAA 81

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+YP+YKA R   P+    Q+ +V+    A GIP +  +G+EADDIIAT
Sbjct: 82  AFDVSRQTFRAEMYPEYKAQRSSAPDDFRGQVDVVKDVLAAMGIPTMAQEGYEADDIIAT 141

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKM 179
            T  A+++GF V I++ D+D +QLV+   T LY         +   E V  K+G+ P + 
Sbjct: 142 MTTRAQEQGFDVLIVTGDRDALQLVNEHVTVLYPRKGVSDLTRFTPEEVDAKYGLTPSQY 201

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEY 236
               AL GD  DN+PGIPG+G KTAA  ++EYG+LE ++ N  ++K K     REN+   
Sbjct: 202 PDYAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLEGLVENVDKVKGKVGDSLRENLA-- 259

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
             T +L+R++  +  D+ +    + L L+  N   +      LEF  L +R+ T
Sbjct: 260 --TVQLNRQITEMVKDMALPYEPQDLALQPWNREAIHQLFDDLEFRVLRDRIFT 311


>gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010]
 gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010]
          Length = 944

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 163/529 (30%), Positives = 278/529 (52%), Gaps = 13/529 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L++F +      + H  K    +L   G+ +   + D  L  Y++     +  +   A  
Sbjct: 417 LQRFLDGHADRIVVHGYKEQSHILASLGLDLAEPWFDTKLAGYLVQPDYHADSLEQAASH 476

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +L           +  + +    D   Q   + +  ++  L  +L  K+   +   + + 
Sbjct: 477 FLQLQLDNADDVAQGQLDLSGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQS 536

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+  ME  G  +D   L ++    + +    +E  +  +G + NL SPKQL  
Sbjct: 537 IELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRVNLQSPKQLQA 596

Query: 632 ILFTKLKFPSGAKTKTGQWKTTA---QDLEQINCGD---NPIIKNILEWRQLSKIKSTYA 685
           +LF  +      KTK+G + T A   QDL   + G+   N  +  +L  R+ +K+K    
Sbjct: 597 VLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLKQI-V 655

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
            SL + +N    R+HT +      TGRL+S++PNLQNIP +   G++IR AF+     + 
Sbjct: 656 QSLIDAVNPDDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGREIRSAFVPGEGYES 715

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+S+DYSQ+ELRI+A ++    L + F +  D H+ VA+ ++G+ ++ ++P  R H K +
Sbjct: 716 LLSSDYSQVELRIMADLSGDDALIEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAM 775

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           ++ + YG+S + LA QL+I   EA     +YF  F  +HEY+E      R+ GY ET+FG
Sbjct: 776 SYGLAYGLSTYGLAQQLKISPGEADRLKSQYFATFGKVHEYLESLVAGAREKGYTETMFG 835

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR ++  + SP  +IR+  ER A+NAPIQGSAADI + AMI    +L   K+ ++++LQI
Sbjct: 836 RRRYFPGLQSPNRNIRDAAERGALNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQI 895

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           HDELV E+   E+   + ++  +ME A    ++L VPL V+  + ++WQ
Sbjct: 896 HDELVVEIAPGEVEQVTGLVRDAMEHA----VDLAVPLDVSTGIGSDWQ 940



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 153/282 (54%), Gaps = 14/282 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P  +     G   NA+ GF  ML ++L + + +    H AV F
Sbjct: 16  LLVVDGHSLAFRAFFALPAENFSTQAGQATNAVWGFATMLSQVLDSEKPD----HLAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  +E QG+E DDIIAT  
Sbjct: 72  DMKGGTFRNEMLPQYKGTREAAPEDLLTQLPLIQKMLTALGVTYVEKQGYEGDDIIATLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + E+ G+   ++S D+D  QL+    T LY        D++H     V  K+ + P + 
Sbjct: 132 AMGERSGYDTLVLSGDRDAFQLIDERVTVLY--PGHHFKDLKHMTPQAVEDKYHVGPAQY 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + +YG LE I+ +A  I  KK  E++ E  E 
Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEGIIEHADEIGGKK-GESLRENIEQ 248

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
            +L+RK+  LR DV + I +E L   + +   L     +LEF
Sbjct: 249 VKLNRKVNALRRDVDLGIGIEDLTFGEVDADALSELFTSLEF 290


>gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
          Length = 925

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/434 (36%), Positives = 259/434 (59%), Gaps = 10/434 (2%)

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           +++   L+L   L  KL    L  +YE L+ P++ ++  ME  GI+++++ +  +    +
Sbjct: 496 DHAEAPLELAEELAKKLDKAGLYSIYENLEIPLVPILFGMERAGIKVNRERMTALRDSTA 555

Query: 604 KNLL-SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-N 661
           + L   +EE    +   K NL SPKQL ++LF KL+     KTKTG + T A+ +E++  
Sbjct: 556 EKLAKEVEEARALVDMPKLNLGSPKQLQEVLFDKLELSKTKKTKTG-YSTAAKAIERLAE 614

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              +P + ++L  R+  K  ST  D L   I     R+HT ++  +T TGRL+S +PNLQ
Sbjct: 615 KHPHPFLDHLLAHREYQKRVSTL-DGLIKAIAS-DGRIHTTFNQTATATGRLSSTDPNLQ 672

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIP++T+ G++IR AF+     + L++ADYSQIE+R++AH ++   L + + +  D+H  
Sbjct: 673 NIPVRTEEGRQIRAAFVPGEGYEALLTADYSQIEMRVMAHFSQDRGLIEAYRSGEDLHNF 732

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           V +++F V + +V+P++RR  K +++ ++YG+S + L+ QL I   EA   + +YF RF 
Sbjct: 733 VGSQVFDVPVNEVTPELRRRVKALSYGLVYGLSEYGLSQQLDISVREAKKIMVKYFERFG 792

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+ +  +  R++ Y  T+ GRR +  ++ S     R   ERAA+NAPIQG+AADI 
Sbjct: 793 GVRRYLNEVVDRARKDEYTSTMLGRRRYLSDLASLNRQARENAERAALNAPIQGTAADII 852

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI V  +L+  KLA+++LLQ+HDEL  EV   E+     II   M++A    I L V
Sbjct: 853 KVAMIRVDAALKKEKLASRVLLQVHDELDVEVANGELEQVRGIIQREMDEA----IELAV 908

Query: 961 PLKVNIKVSNNWQE 974
           PL+V + V  +W E
Sbjct: 909 PLEVGMAVGADWNE 922



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/270 (34%), Positives = 143/270 (52%), Gaps = 23/270 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P        G   NA+ GF +ML  LL+  +     +H A  F
Sbjct: 14  LLLLDGHSLAFRAFYALPADKFTDSSGQHTNAVYGFISMLVTLLEQEK----PTHSAAAF 69

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E + DYKA RP+ P     Q+ L+R A + FGI  ++ + +EADD+IAT  
Sbjct: 70  DLAGPTFRSEKFADYKAQRPETPPEFKGQIELIRQALETFGITTVDYKRYEADDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
               ++GF   I + D+D +QLV+    +  T++      +   E V +K+G+ P +   
Sbjct: 130 TQGHEQGFDTYICTGDRDSLQLVTDDVTVLYTLRGVSNLARFTPEAVEEKYGVTPTQYPD 189

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----ASRIKQKKRRENILEYA 237
           L AL GD+ DN+PG+PG+G KTA   + +YG+L N++ N      ++    RR+      
Sbjct: 190 LAALRGDTSDNMPGVPGVGPKTAQKWINKYGSLSNLIDNIDDIGGKVGDALRRD-----I 244

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           +T   +R+L  +  D+PI         EDC
Sbjct: 245 DTVIQARELTEMVRDLPIKCS-----PEDC 269


>gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 903

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 280/513 (54%), Gaps = 12/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    VL  +G  + G   D  L +Y++  GR S  + ++A ++L    +E+  
Sbjct: 396 KVLHNAKNVMRVLPEHGWQLEGVTMDTALAAYLVKPGRRSFALDALAVEYLG---RELAP 452

Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +  +   +   +D + ++ A+   +  +L L      +L       +   ++ P   +++
Sbjct: 453 AAAADGQLAFGADDRAEQDALMAQARAVLDLGDAFTTRLKEVGAAELLHDMELPTSILLA 512

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++E  GI  D+  L+ +  + +  +    +  +   G +FNL SPKQL +ILF +L  P 
Sbjct: 513 RLERHGIAADRAHLEGMEQQFAGTVQQAVKEAHAAVGREFNLGSPKQLQEILFNELGLPK 572

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               ++ +   +L  R+ +K++ T  + L   I     R+HT
Sbjct: 573 TKKTKTGYTTDADALAWLAAQTEHELPVLMLRHREQAKLRVTV-EGLIKTIAT-DGRIHT 630

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 631 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAH 690

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H  VA+++FGV  + V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 750

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I  +EA   +  YF RF G+ +Y+ +     R  GY ETI GRR +  ++NS     R
Sbjct: 751 LNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRR 810

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM+ V K+L +  L ++MLLQ+HDE+V E+ + E    
Sbjct: 811 EAAERMALNAPIQGTAADIVKVAMLRVDKALTEAGLTSRMLLQVHDEIVLEIAKGERKQV 870

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +I+ H M  A    + LR PL V++ V  +W+
Sbjct: 871 EEILRHEMANA----VELRAPLDVSVGVGKDWE 899



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 142/254 (55%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NA+ GF +ML     N+ ++   +HFAV F
Sbjct: 16  LLLMDGHSLAYRAFFALPAENFTTAVGQPTNAVYGFMSML----ANTLRDEAPTHFAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R + +P+YKANR K P+    Q+ L+     A       + GFEADD+IAT  
Sbjct: 72  DVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMHADRFAVDGFEADDVIATLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QL++   T LY T  V E  +   E V++K+G+ P++   
Sbjct: 132 TQAEAAGFEVLIVTGDRDSFQLITDNVTVLYPTKGVSELTRFTPEKVVEKYGLTPQQYPD 191

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ +  +
Sbjct: 192 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKA-GQNFRDHLDAVK 250

Query: 242 LSRKLVMLRTDVPI 255
           ++R L  +  DV +
Sbjct: 251 MNRVLTEMVRDVEL 264


>gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 352

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/348 (43%), Positives = 214/348 (61%), Gaps = 8/348 (2%)

Query: 629 LGDILFTKLKFPSGAKTK--TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           +G++L+ +LK P   KTK  TG + T  ++LE++    + +   ++  R LSK+KSTY D
Sbjct: 8   MGEVLYERLKLPHARKTKGKTG-YSTDYRELERL-AAYHDLPAAVISHRNLSKLKSTYVD 65

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L   I+    RVHT ++   T TGRL+S  PNLQNIPI+T  G+++R AF++      +
Sbjct: 66  KLATLIDPADGRVHTTFNQTVTATGRLSSSNPNLQNIPIRTPEGRRLRAAFVAAAEHLFL 125

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQI+LR+LAH +    L + F +  DIH   AAEIF VN   VS  MRR AKTINF
Sbjct: 126 AADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINF 185

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            I+YG+S F LA QLR  R EA  +I RYF  + G+H ++++     R++G+V T+  RR
Sbjct: 186 GIVYGMSAFGLAEQLRCSRKEAQTFIDRYFELYQGVHRFMQEIVEQARRDGWVGTLLQRR 245

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
               EINS     R   ER AIN PIQG+AADI + A I+  ++L +    ++ LLQIHD
Sbjct: 246 RPLPEINSGNKMRREFAERTAINTPIQGTAADIIKLAAIACDRALREADCRSEALLQIHD 305

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+FEVP++E+     +I  +ME+     + L VPL VN+K   N  E
Sbjct: 306 ELIFEVPQDELAQVGPLIRQAMEEV----MELAVPLTVNLKSGPNLSE 349


>gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4]
 gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4]
          Length = 899

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 287/505 (56%), Gaps = 23/505 (4%)

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G++M    D+ L +Y++  G+ S+ +A + Q+ L     E   + K    +D++ D++  
Sbjct: 401 GVTM----DVALAAYLVRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEVDDAEAA 456

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLH---VYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + A + +    +  + L  +L VE + +H   +   ++ P++ V+++ME  GI +D   L
Sbjct: 457 QRAADAAATRARAVVDLAERLDVELEQVHGATLMAEMELPLVPVLARMESIGIAVDASAL 516

Query: 596 KQVSAEIS-KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
             +  + + +   + E     + GE+ NL SPKQL  +LF  L  P   KTKT  + T A
Sbjct: 517 NGLRDDFADRGRQAAEAAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKTKT-GYTTDA 575

Query: 655 QDLEQI---NCGDNP---IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           + LE++     GD P    ++ +L  R+ +K+++T    +    + R  R+HT ++    
Sbjct: 576 KALEELLAKETGDTPGRAFLEALLLHRETTKMRTTVEGLIKTIGDDR--RIHTTFNQTVA 633

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S +PNLQNIP++T+ G++IR +F+       L++ADYSQIE+R++AH++    L
Sbjct: 634 ATGRLSSTDPNLQNIPVRTEDGRRIRGSFVVGEGYDCLLTADYSQIEMRVMAHLSGDAGL 693

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F    D+H  V +  FGV I++V+P++RR  K +++ + YG+S F LA QL I + E
Sbjct: 694 IEAFRTGEDLHSFVGSRAFGVPIDQVTPELRRRVKAMSYGLAYGLSAFGLAAQLGISQGE 753

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + ++ YF RF G+ +Y++      R++GY ET+FGRR +  E+NS     R   ERAA
Sbjct: 754 AREQMEAYFSRFGGVRDYLQAVVEQARKDGYTETLFGRRRYLPELNSDNRLKRENAERAA 813

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQG+AADI + AM+ V   L    L +++LLQ+HDELV EV   E+     ++V  
Sbjct: 814 LNAPIQGTAADIIKAAMLKVDADLTARGLKSRLLLQVHDELVLEVAPGELDEVRGLVVDR 873

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           M  A    I L VPL V+     NW
Sbjct: 874 MYSA----IELDVPLDVSTGTGPNW 894



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 140/262 (53%), Gaps = 12/262 (4%)

Query: 9   LVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
           ++DG S  +RAFYA P  +     G   NA+ GF +M+  L+     E   +H AV FD 
Sbjct: 1   MLDGHSLAFRAFYALPAENFSTASGQHTNAVYGFLSMVANLV----TEEEPTHLAVAFDV 56

Query: 68  PAVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              T  R   YP+YK+ R   PE    Q+ L++ A  A  +  + ++G EADDIIAT   
Sbjct: 57  SRATLHRTAEYPEYKSTRSAAPEEFKGQIELIQEALAALRVRTLSLEGHEADDIIATLAT 116

Query: 127 IAEKEGFAVTIIST-DKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
            A   G A  +I T D+D +QLVS   T LY    V E  +   E V  K+G+ P +   
Sbjct: 117 GAAHSGDARILICTGDRDALQLVSDAVTVLYPVKGVSELARFTPEAVEAKYGVTPAQYPD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL GDS DN+PG+P +G KTAA  + +YG+L  ++ +A  IK K   E+  E+    +
Sbjct: 177 VAALRGDSSDNLPGVPKVGDKTAAKWITQYGSLSELIAHADEIKGKV-GESFREHLPQVQ 235

Query: 242 LSRKLVMLRTDVPITIPLEHLI 263
           L+R++  L  D+ + + L  L+
Sbjct: 236 LNRRITELTRDLDLGVELTDLV 257


>gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
          Length = 845

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/458 (35%), Positives = 255/458 (55%), Gaps = 9/458 (1%)

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSN---VILQLWLLLRPKLIVEKLLHVYERLDKPM 576
           +L   +     D+I  +   E A+   N     L++  ++  +L    LL + + L+ P+
Sbjct: 391 LLNPEERDYSFDRIFRTYAPEIAVHRENRAVAALKIGQMVEKRLDAAGLLGLMQELEMPL 450

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+ +ME  GI ID         ++ K+L  L  +IY L+G++FN+ S +Q   +LF +
Sbjct: 451 VPVLCRMESAGIGIDLAAFDNFLRQVKKSLDDLTASIYSLAGKEFNIRSTQQTAQVLFDE 510

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L   +  KT  G + T+   LE +   D+ I+  IL++R L K++STY + LP  ++   
Sbjct: 511 LGLKARRKTPKGAYSTSNVVLESMRR-DHDIVDLILQYRTLEKLRSTYLEPLPRKVDV-G 568

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+HT ++  +T TGRL+S  PNLQNIPIK + G ++R  F     K L++ADYSQIELR
Sbjct: 569 GRLHTTFNQLATATGRLSSSNPNLQNIPIKGEFGPRMRACFKPSKGKLLVAADYSQIELR 628

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH++    L Q F  + DIHR  A  +F  +I++VS   RR AKTINF ++YG+ P +
Sbjct: 629 ILAHMSMDPNLLQAFGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTINFGLLYGMGPQK 688

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ +L I   EA ++I  YF +   + ++ ++ +   ++ GYV T+ GRR    +INS  
Sbjct: 689 LSRELSISMEEAKEFISVYFSKLDRVRDFYQQIEEKAQEQGYVTTMAGRRRLLPDINSRN 748

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           +++     R A+N  IQGSAAD+ ++AM++V    E   L + M+LQ+HDEL+ EV    
Sbjct: 749 TNMAQQARRTAVNTVIQGSAADVIKKAMLAVDSDSELRSLGSVMVLQVHDELLLEVDAPV 808

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              A + +   M        +L VPL V      NW E
Sbjct: 809 AQKAGERLARVMAGVE----SLEVPLLVEWGTGENWAE 842



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/291 (39%), Positives = 159/291 (54%), Gaps = 9/291 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   +FL+DGSSF+YRAFYA P L R  DGLP NAI     ML K+++  + E    +  
Sbjct: 9   KNEPVFLIDGSSFLYRAFYAYPDLKRS-DGLPTNAIYIVIRMLLKIVKEEKPE----YMG 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D    TFR+E+Y  YKA RP +PE L  Q+  +R A +  GIP    QG EADD+IA
Sbjct: 64  FFLDGKGPTFRHELYIPYKAQRPGMPEGLSAQIEPLREAVRILGIPEYTAQGLEADDLIA 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--EKIDIEHVIKKWGIPPEKMV 180
            YT I  K    V I+++DKDL QL+     L+D   +  E +D +   ++ GI PE+  
Sbjct: 124 GYTEIF-KSKHPVIIVASDKDLKQLLDDHVYLWDPGAKNAEILDCDGFRRETGIGPEQWP 182

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GDS DNIPGIPG+G KTA   L+++ +LE +      +K K+ +E + E+ +  
Sbjct: 183 DYQALVGDSSDNIPGIPGVGPKTALNWLKKFPSLEELQAGLDELKPKE-QEKLREHMDDV 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            L R+L  L+ D      LE L     +   L  FL   EF  L N +  +
Sbjct: 242 FLYRRLTKLKPDCLSGAGLETLKTRPADPVELQKFLDEYEFKSLKNEIPGS 292


>gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 936

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/411 (37%), Positives = 234/411 (56%), Gaps = 15/411 (3%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P   V++ ME  GI +D   L  +S E+  ++    E    + G + NLSSPKQL +
Sbjct: 530 VEMPTAAVLAGMERVGIGVDSARLGALSDELGGDVERAREGALAVLGREVNLSSPKQLQE 589

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDN-PIIKNILEWRQLSKIKSTY 684
           +LF     P   +TKTG + T A+ L+ +        GD    + ++L  R   K+K   
Sbjct: 590 VLFEHFGLPRTRRTKTG-YTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLKQMV 648

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-K 743
            DSL   +     R+HT +S  +  TGRLAS +PNLQNIP ++  G +IR  F++ P  +
Sbjct: 649 -DSLIASVAD-DGRIHTTFSQVAAATGRLASADPNLQNIPARSADGMRIRGGFVAGPGFE 706

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+SADYSQIE+RI+AH+++   L   F +  D+HR +A+ +FG  + +V+ Q R   K 
Sbjct: 707 ALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDLHRTMASMVFGTPVAEVTAQQRSRIKA 766

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            ++ + YG+S + L+ QL IP  EAA   +RYF RF G+ +Y+E   +  R  GY ET++
Sbjct: 767 TSYGLAYGLSKYGLSKQLGIPVPEAAALRERYFERFGGVRDYLESLVDQARSRGYTETMY 826

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  ++ S     R + ERAA+NAPIQGSAADI + AMI V  +L    L +++L+Q
Sbjct: 827 HRRRYLPDLGSDNRQRREMAERAALNAPIQGSAADIMKLAMIGVVGALGRAGLRSRVLVQ 886

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           IHDEL+ EV   E     + +   M        +LRVPL V++ V  +WQE
Sbjct: 887 IHDELLVEVAPGERERVEEAVRQEMAGVA----SLRVPLDVSVGVGPSWQE 933



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 149/287 (51%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           + ++DG S  YRAFYA P        G   NA+ GF +ML +LL+  R     +H AV F
Sbjct: 38  VLIIDGHSMAYRAFYALPADKFVTTTGRCTNAVYGFVSMLTRLLEQERP----THVAVAF 93

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR + YP+YK  R   PE    Q+ L+     A GI ++  + +EADDI+AT  
Sbjct: 94  DLSRHSFRTDEYPEYKGTRDATPEEFKGQVELIGQVLGAMGITSLTKERYEADDILATVA 153

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVC 181
               + G  V ++S D+D  Q V    T LY         ++D   V  K+G+PP +   
Sbjct: 154 RRGAEAGMRVLVVSGDRDSFQTVGERVTVLYPGTGPGDLRRMDPAAVEAKYGVPPHRYPE 213

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL G++ DN+PG+PG+G KTAA  +  +  L+N+L  A  +   KR + + ++A+  R
Sbjct: 214 VAALVGEASDNLPGVPGVGPKTAAQWIARFDGLDNLLARADEVG-GKRGQALRDHADEVR 272

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +R+L  L  D+ + + ++ L     +   + S   ALEF  L  RV
Sbjct: 273 RNRRLNRLVDDLDLGVGIDDLRRGPTDFAEIQSLFDALEFGSLRRRV 319


>gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
 gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
          Length = 888

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 151/395 (38%), Positives = 238/395 (60%), Gaps = 9/395 (2%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++E  GI +D + L  + A  +  +    ++ Y + G++ NL SPKQL  +LF +L  P 
Sbjct: 498 EIEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVIGKEINLGSPKQLQVVLFDELGMPK 557

Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             KTKT  + T A  L+ +     +P ++++L  R ++++K+T  D L   +     R+H
Sbjct: 558 TKKTKT-GYTTDADALQSLFESTQHPFLQHLLAHRDVTRLKTT-VDGLLKAVAD-DGRIH 614

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T +      TGRL+S +PNLQNIPI+TD G++IR  F+  P   +L++ADYSQIE+RI+A
Sbjct: 615 TTFHQTIAATGRLSSTDPNLQNIPIRTDEGRRIREGFVVGPGYAELMTADYSQIEMRIMA 674

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    L + F +  D+H  VA++ F V   +V+ + RR  K +++ + YG+S + LA 
Sbjct: 675 HLSGDEGLIEAFRSGEDLHTFVASKAFSVPTGEVTAEQRRRVKAMSYGLAYGLSEYGLAQ 734

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QLRIP +EA + ++ YF RF G+ +Y++      R+ GY ETI GRR +  ++NS     
Sbjct: 735 QLRIPAAEAREQMEAYFSRFGGVRDYLQSIVEEARKKGYTETILGRRRYLPDLNSDNRQR 794

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R + ER A+NAPIQGSAADI + AM+ V ++LE  +L ++MLLQ+HDELV E+ + E   
Sbjct: 795 REMAERMALNAPIQGSAADIIKVAMLGVFQALEASELTSRMLLQVHDELVLEIADGERAA 854

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ++   M  A      L VPL+V++ V  +W E
Sbjct: 855 VESLVREHMGNA----FQLSVPLEVSVGVGRSWDE 885



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 151/292 (51%), Gaps = 10/292 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L LVDG S  YRAF+A P  + +   G   NA+ GF +ML  LL++ +     +H AV
Sbjct: 7   SRLLLVDGHSMAYRAFFALPAENFQTATGQTTNAVYGFTSMLINLLRDEKP----THIAV 62

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E YP+YKA R + P+    Q+ L++    A  IP +  + FEADD+IAT
Sbjct: 63  AFDVSRRTFRTEAYPEYKAGRSETPDEFRSQVSLIQDVLTALAIPFLSKENFEADDLIAT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLY--DTVKE-EKIDIEHVIKKWGIPPEKM 179
               A   G  V I + D+D +QLV+   T LY    V E  +   E V++K G+PP   
Sbjct: 123 LATQATALGQKVLICTGDRDALQLVNDDITVLYPVKGVSELARYTPELVLEKQGVPPSLY 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GDS DN+P  PG+G KT   LL ++G+L  ++    ++K K   E++      
Sbjct: 183 ADYAAIRGDSSDNLPNTPGVGPKTIVKLLGQFGDLSGLVEGVDQVKGKV-GESLRANLAN 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
             L+R+L  L  DV + +  E L  +  +   +      LEF  L +R+  T
Sbjct: 242 ILLNRQLTELVRDVELPLGPEDLAAKAWDRDAVHRLFDQLEFRVLRDRLFAT 293


>gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17]
 gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17]
          Length = 943

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 163/529 (30%), Positives = 277/529 (52%), Gaps = 13/529 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L++F +      + H  K    +L   G+ +   + D  L  Y++     +  +   A  
Sbjct: 416 LQRFLDGHADRMVVHGYKEQSHILASLGLDLAEPWFDTKLAGYLVQPDYHADSLEQAASH 475

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +L           +  + +    D   Q   + +  ++  L  +L  K+   +   + + 
Sbjct: 476 FLQLQLDNADDVAQGQLDLSGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQS 535

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+  ME  G  +D   L ++    + +    +E  +  +G + NL SPKQL  
Sbjct: 536 IELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRVNLQSPKQLQA 595

Query: 632 ILFTKLKFPSGAKTKTGQWKTTA---QDLEQINCGD---NPIIKNILEWRQLSKIKSTYA 685
           +LF  +      KTK+G + T A   QDL   + G+   N  +  +L  R+ +K+K    
Sbjct: 596 VLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLKQI-V 654

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
            SL + +N    R+HT +      TGRL+S++PNLQNIP +   G++IR AF+     + 
Sbjct: 655 QSLIDAVNPDDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGREIRSAFVPGEGYES 714

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+S+DYSQ+ELRI+A ++    L + F +  D H+ VA+ ++G+ ++ ++P  R H K +
Sbjct: 715 LLSSDYSQVELRIMADLSGDDALIEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAM 774

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           ++ + YG+S + LA QL+I   EA     +YF  F  +HEY+E      R+ GY ET+FG
Sbjct: 775 SYGLAYGLSTYGLAQQLKISPGEADRLKSQYFATFGKVHEYLESLVADAREKGYTETMFG 834

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR ++  + SP  +IR+  ER A+NAPIQGSAADI + AMI    +L   K+ ++++LQI
Sbjct: 835 RRRYFPGLQSPNRNIRDAAERGALNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQI 894

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           HDELV E+   E    + ++  +ME A    ++L VPL V+  + ++WQ
Sbjct: 895 HDELVVEIAPGEAEQVTGLVRDAMEHA----VDLAVPLDVSTGIGSDWQ 939



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 152/282 (53%), Gaps = 14/282 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P  +     G   NA+ GF  ML ++L + + +    H AV F
Sbjct: 16  LLVVDGHSLAFRAFFALPAENFSTQAGQATNAVWGFATMLSQVLDSEKPD----HLAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  +E QG+E DDIIAT  
Sbjct: 72  DMKGGTFRNEMLPQYKGTREAAPEDLLTQLPLIQKMLTALGVTYVEKQGYEGDDIIATLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + E+ G+   ++S D+D  QL+    T LY        D++H     V  K+ + P + 
Sbjct: 132 AMGERSGYDTLVLSGDRDAFQLIDERVTVLY--PGHHFKDLKHMTPQAVEDKYHVGPAQY 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + +YG LE I+ +A  I  KK  E++ E  E 
Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEGIIEHADEIGGKK-GESLRENIEQ 248

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
            +L+RK+  LR DV + I +E L   + +   L      LEF
Sbjct: 249 VKLNRKVNALRRDVDLGIGIEDLTFGEVDADALSELFTNLEF 290


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score =  278 bits (710), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 181/517 (35%), Positives = 282/517 (54%), Gaps = 27/517 (5%)

Query: 465 IGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           IG N+KYD ++V +  G++    F+D M+++++ D   SS  + ++A++   Y   +   
Sbjct: 380 IGQNLKYDFEIVKNNLGLNPPANFKDTMILAWLSDP-NSSVGMDALAKRLYDYDTIKFED 438

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLL----LRPKLIVEKLLHVYERLDKPMID 578
             K       +      ++A E++ + L+ +      L P L+    +H +     P I 
Sbjct: 439 VVKKGQTFGDVPLENAAKYAAEDAWITLKFYKTFQNTLDPNLLALADMHEF-----PFIL 493

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
            +  ME  GI+I++  ++++  E    L +L   IY+LSGE FN++S KQLG ILF  LK
Sbjct: 494 TLFDMEQNGIKINEAKMQKLILENDTKLKALTSEIYELSGENFNINSVKQLGVILFEHLK 553

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK-RTQ 697
            P+  KTKTG     +   E I+   +P++  IL +R+L K++STY + L     K    
Sbjct: 554 LPTKKKTKTGYSTDESVLAELIDA--HPVVGKILAYRELYKLQSTYCEPLLALAKKDEGS 611

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R++T +    T TGRL+S  PNLQNIP +  L + +R  F +      +  DYSQIELR+
Sbjct: 612 RIYTSFLQTGTSTGRLSSKNPNLQNIPARGSLAKDVRECFEAREGYSFVGLDYSQIELRL 671

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH ++   L + F+N  DIH   A  IFG +      Q R  AK+INF +IYG+   +L
Sbjct: 672 LAHFSRDPALLEAFKNDEDIHARTAISIFGSS----DGQNRAVAKSINFGLIYGMGSSKL 727

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A Q+ I R+EA +YI+RYF  F  I E++E  K   +  G+V+T+ GR+ ++D   S   
Sbjct: 728 ANQVNITRAEAKEYIERYFKAFATIKEFLESIKISAKNEGFVQTLLGRKRYFD-FKSATP 786

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
               + ER A+N   QGSAAD+ + AM+ V  +L+ +     MLLQIHDEL+FEV +E  
Sbjct: 787 MQMAMFEREAVNTVFQGSAADLVKMAMVKVRANLDKN---ASMLLQIHDELIFEVKDEFA 843

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +    +ME+       L VPLK ++ ++ NW E
Sbjct: 844 QEFGRATQKTMEEI----YTLNVPLKTSLNIAKNWGE 876



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 133/256 (51%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA   L +  DG P   I+GF N +  L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLYYAMSGL-KNRDGKPSGMISGFANFIASL----KDEYQSDYLIFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T R+EI  +YKANR + P  L  QLP+     +  G+ ++  +G+EADDIIA+   
Sbjct: 59  SKGKTLRHEILGEYKANRSEPPAQLKEQLPVCIDMIEKMGLYSLSREGYEADDIIASTVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           I + +   V I++ DKDL QL+      +Y    +   D     +K+G+ P ++    A+
Sbjct: 119 ICKDKDIFVRIVTHDKDLYQLIEDGKVSIYSPQSKIDHDSASCFEKYGVYPAQVRDFLAI 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG   A  LL EYG+LE I  N + I+ ++ +  +    + A LS+K
Sbjct: 179 AGDSSDNIPGVKGIGAVGAKKLLAEYGSLEGIYENLALIRNERTKNMLAAARDEAFLSKK 238

Query: 246 LVMLRTDVPITIPLEH 261
           L  L  D   ++ LEH
Sbjct: 239 LATLFDDAITSLDLEH 254


>gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
          Length = 943

 Score =  278 bits (710), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 163/529 (30%), Positives = 277/529 (52%), Gaps = 13/529 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L++F +      + H  K    +L   G+ +   + D  L  Y++     +  +   A  
Sbjct: 416 LQRFLDGHADRIVVHGYKEQSHILASLGLDLAEPWFDTKLAGYLVQPDYHADSLEQAASH 475

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +L           +  + +    D   Q   + +  ++  L  +L  K+   +   + + 
Sbjct: 476 FLQLQLDNADDVAQGQLDLSGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQS 535

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+  ME  G  +D   L ++    + +    +E  +  +G + NL SPKQL  
Sbjct: 536 IELPVSHVLFGMEQVGASVDFMRLTEMRDRFAIDARDAQETAWQFAGSRVNLQSPKQLQA 595

Query: 632 ILFTKLKFPSGAKTKTGQWKTTA---QDLEQINCGD---NPIIKNILEWRQLSKIKSTYA 685
           +LF  +      KTK+G + T A   QDL   + G+   N  +  +L  R+ +K+K    
Sbjct: 596 VLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLKQI-V 654

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
            SL + +N    R+HT +      TGRL+S++PNLQNIP +   G++IR AF+     + 
Sbjct: 655 QSLIDAVNPDDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGREIRSAFVPGEGYES 714

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+S+DYSQ+ELRI+A ++    L + F +  D H+ VA+ ++G+ ++ ++P  R H K +
Sbjct: 715 LLSSDYSQVELRIMADLSGDDALIEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAM 774

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           ++ + YG+S + LA QL+I   EA     +YF  F  +HEY+E      R+ GY ET+FG
Sbjct: 775 SYGLAYGLSTYGLAQQLKISPGEADRLKSQYFATFGKVHEYLESLVAGAREKGYTETMFG 834

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR ++  + SP  +IR+  ER A+NAPIQGSAADI + AMI    +L   K+ ++++LQI
Sbjct: 835 RRRYFPGLQSPNRNIRDAAERGALNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQI 894

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           HDELV E+   E    + ++  +ME A    ++L VPL V+  + ++WQ
Sbjct: 895 HDELVVEIAPGEAEQVTGLVRDAMEHA----VDLAVPLDVSTGIGSDWQ 939



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 153/282 (54%), Gaps = 14/282 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P  +     G   NA+ GF  ML ++L + + +    H AV F
Sbjct: 16  LLVVDGHSLAFRAFFALPAENFSTQAGQATNAVWGFATMLSQVLDSEKPD----HLAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  +E QG+E DDIIAT  
Sbjct: 72  DMKGGTFRNEMLPQYKGTREAAPEDLLTQLPLIQKMLTALGVTYVEKQGYEGDDIIATLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + E+ G+   ++S D+D  QL+    T LY        D++H     V  K+ + P + 
Sbjct: 132 AMGERSGYDTLVLSGDRDAFQLIDERVTVLY--PGHHFKDLKHMTPQAVEDKYHVGPAQY 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + +YG LE I+ +A  I  KK  E++ E  E 
Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEGIIEHADEIGGKK-GESLRENIEQ 248

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
            +L+RK+  LR DV + I +E L   + +   L     +LEF
Sbjct: 249 VKLNRKVNALRRDVDLGIGIEDLTFGEVDADALSELFTSLEF 290


>gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
 gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
          Length = 340

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 155/343 (45%), Positives = 215/343 (62%), Gaps = 6/343 (1%)

Query: 633 LFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +F KLK    AK TKTGQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  
Sbjct: 1   MFDKLKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPLL 59

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN RT RVHT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYS
Sbjct: 60  INPRTGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYS 119

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRI+AH+++   +   F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYG
Sbjct: 120 QIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYG 179

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           IS F LA ++ + R EA + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +
Sbjct: 180 ISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPD 239

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           INS  + +R   ER AINAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F 
Sbjct: 240 INSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFS 299

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           VP  E     +I++  MEKA      + VPLK +     NW E
Sbjct: 300 VPVNEKERVEEIVIEEMEKA----YRMHVPLKADCGWGKNWLE 338


>gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
 gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
          Length = 910

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 164/529 (31%), Positives = 283/529 (53%), Gaps = 15/529 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L ++  +    K  H+ K     L   G+ +RG   D  L +Y+    + S+D+A +  +
Sbjct: 391 LAQWLADPEAPKAVHDAKPAWHALTGRGLEVRGVVMDTALAAYLCHPDQRSYDLADLVVR 450

Query: 512 WL--SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           +L     R ++ ++ +  + +D  S ++    A   +  +++L   L  ++       + 
Sbjct: 451 YLHRELPRTDLDETGQGMLDLDADSGAK---SAGARAVAVVELAGPLAEEVADRGAQALL 507

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
           E ++ P++  +++ME  GI  D + L+ +  E    +       Y+  G + NL SPKQL
Sbjct: 508 EDVELPLLRTLAEMEHDGIGADVEYLRGIEREFDAVVERAALGAYEAIGRQVNLGSPKQL 567

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSL 688
            ++LF  L  P   +TKTG + T A  L  +    ++P ++++L  R+  +++ T  + L
Sbjct: 568 QEVLFDDLGMPKTRRTKTG-YTTDADALADLYVKTEHPFLEHLLAHREAIRLRQTV-EGL 625

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
              +     R+HT +      TGRL+S +PNLQNIPI+T+ G +IR  F+     + L++
Sbjct: 626 LRSVAP-DGRIHTTFQQTIAATGRLSSADPNLQNIPIRTEEGYRIREGFVVGEGYETLLT 684

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIE+RI+AH++    L + F +  D+H  V + +FGV  ++V+  MR   K +++ 
Sbjct: 685 ADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVGSRVFGVPTDEVTSAMRSKIKAMSYG 744

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           + YG+S F L+ QL I  +EA   +  YF RF G+ +Y+       RQ GY ET+ GRR 
Sbjct: 745 LAYGLSAFGLSKQLSIDVAEARTLMDDYFDRFGGVRDYLSGVVAQARQVGYTETLMGRRR 804

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ S     R + ER A+NAPIQGSAAD+ + AM+ VH+ + +  +++++LLQ+HDE
Sbjct: 805 YLPDLTSDNRQRREMAERMALNAPIQGSAADLIKVAMLGVHRQMGEAGMSSRLLLQVHDE 864

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           LV EV   E     +++   M  A      L VPL V++    +W+E  
Sbjct: 865 LVLEVAPGEREALEELVRAQMGAAA----ELSVPLDVSVGTGRSWREAG 909



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 154/292 (52%), Gaps = 16/292 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG S  YRAF+A P+ +     G P NA+ GF +ML  LL++       +H AV
Sbjct: 25  GRLLLIDGHSMAYRAFFALPVENFSTTSGQPTNAVYGFTSMLINLLRDEDP----THVAV 80

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFR E+Y +YK  R   PE    Q+PL++    A  IP++     EADD+IAT
Sbjct: 81  AWDVARTTFRTEVYAEYKGTRDATPEPFRGQVPLIQEVLTALRIPSMSKDDVEADDVIAT 140

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY------DTVKEEKIDIEHVIKKWGIPP 176
               AE+ G  V + S D+D  QLVS   T LY      D V+     +E   +K+G+ P
Sbjct: 141 LAGQAEQAGLDVLVCSGDRDTFQLVSDAVTVLYPRKGVSDLVRMSPAAVE---EKYGLAP 197

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
                L AL G++ DN+PG+PG+G KTAA  +  +G L+ ++  A +I  K   EN+  +
Sbjct: 198 ALYPDLAALVGETSDNLPGVPGVGPKTAAKWILAHGGLDGVIAAADQITGKA-GENLRAH 256

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +   L+R+L  L TDV + I ++ L   + +         AL+F  L +R+
Sbjct: 257 LDQVILNRRLNRLLTDVELPIAVDDLARSEIDREATHEVFDALQFRVLRDRL 308


>gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis]
 gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis]
          Length = 267

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 136/268 (50%), Positives = 182/268 (67%), Gaps = 4/268 (1%)

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRLAS +PNLQNIP++T  G++IR AF++PP   ++SADYSQIELRI+AH+++  
Sbjct: 1   AVAITGRLASSDPNLQNIPVRTAEGRRIREAFVAPPGSHIVSADYSQIELRIMAHLSQDA 60

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            +   F N+ DIHR  AAEIFGV    V  + RR+AK INF +IYG+S F LA  L I R
Sbjct: 61  GMLSAFANNEDIHRATAAEIFGVERAAVDSEQRRYAKVINFGLIYGMSAFGLAQNLNIER 120

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           S AA+YI+RYF R+PG+ +Y+  T+   +Q GYVETIFGRR+   EINS     RN  ER
Sbjct: 121 SAAANYIERYFARYPGVRQYMNDTRELAKQQGYVETIFGRRLWVPEINSANVQRRNGAER 180

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QG+AAD+ + AMI+V + L   KL TK+++Q+HDELV EVP+ E+    + + 
Sbjct: 181 AAINAPMQGTAADLIKLAMIAVDQWLTAEKLQTKLIMQVHDELVLEVPDAELALIQEHLP 240

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             M+        L VPL   +   NNW+
Sbjct: 241 RLMQSVA----TLDVPLLAEVGSGNNWE 264


>gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 892

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 281/539 (52%), Gaps = 26/539 (4%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503
           LT +    L  +  +    K  H  K   L L    + + G + D  L +Y+L   + S+
Sbjct: 364 LTPDDEKALAAWLTDPQATKAMHGAKGPLLALWARQLDLAGLDSDTQLAAYLLRPDQRSY 423

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           D+  +A + L    +     + +   +D  S+ Q  E A+  +  I +L  +L  +L   
Sbjct: 424 DLDDLALRHLGRELRVQDSEQVNQETLDFGSERQPAETAMLRARAIAELAGVLDGELDDT 483

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
               +   L+ P+  V+++ME  G+ ID D+L Q+ +E    + + E+  +   G + NL
Sbjct: 484 SQRGLLHSLEMPLERVLARMEQRGVAIDMDVLDQLRSEYDARVQAAEQAAFAAIGTQINL 543

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSK--- 679
            SPKQL  +LF +L  P   +TK+G + T A  LE++     +P ++++L +R   K   
Sbjct: 544 GSPKQLQAVLFDQLDMPKTKRTKSG-YTTDADALEKLYQKTRHPFLEHLLAYRDTIKLRQ 602

Query: 680 -----IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
                IKST  D           R+HT Y      TGRL+S +PNLQNIPI+T  G++IR
Sbjct: 603 IIDTLIKSTSDDG----------RIHTTYVQTVAGTGRLSSTDPNLQNIPIRTPEGRRIR 652

Query: 735 RAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
            AF+     + L+SADYSQIE+R++A  +    L   F +  D H M A+ +F V +E+V
Sbjct: 653 DAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHSMTASHVFDVPVEQV 712

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +P  R   K +N+ + YG+S + L+++L +   EA   + +YF  F  + +Y++      
Sbjct: 713 TPAQRSSVKQMNYGLAYGLSAYGLSSRLNVSVPEARALMDQYFQTFGPVRDYLDSLVEKA 772

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           R+ GY ET+ GRR +  ++NS     R + ER A+NAP+QG+AADI + AM+ V + L  
Sbjct: 773 RKQGYTETMLGRRRYLPDLNSSNRQRRQMAERMALNAPMQGTAADIIKTAMLQVEQELSA 832

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             L ++MLLQIHDELV EV   E     QI+   M+ A    I L VPL V+     +W
Sbjct: 833 SGLRSRMLLQIHDELVLEVAAGERDRVQQIVGDKMKHA----IELTVPLDVSFGYGRSW 887



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 162/297 (54%), Gaps = 10/297 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M +   L ++DG S  +RAFYA P+ +     G   NA+ GF +ML  LL+N       +
Sbjct: 1   MTETARLLVIDGHSMAFRAFYALPVENFSTSTGQYTNAVYGFTSMLINLLRNEEP----T 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR +IY DYK  R K PE    Q+ L++    A GI   E++GFE DD
Sbjct: 57  HLGVAFDVSRRTFRTDIYEDYKGTRAKTPEEFSGQIGLIKQVLDAMGIAHAELEGFEGDD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIP 175
           I+AT++  A+ +G+   I+S D+D  QLV   TT LY    V E  ++  E V  K+G+ 
Sbjct: 117 IVATWSAQADAKGWENLIVSGDRDSFQLVDDNTTVLYPKKGVSELSRMTPEAVEAKYGVS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P     L AL GD+ DN+ G+PG+G KTAA  L +YG+L N+L +A  IK K   +++  
Sbjct: 177 PTHYPELAALVGDTSDNLTGVPGVGPKTAAKWLAKYGDLANLLDHADEIKGKV-GDSLRA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + +  + +R+L    TD+ + + +E L   + N   +      L+F  L +R+ + +
Sbjct: 236 HLDDVKRNRELNRELTDLKLPVDVEGLARAEINREAVHEVFDVLQFRTLRDRLFSVF 292


>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
          Length = 831

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 169/490 (34%), Positives = 267/490 (54%), Gaps = 34/490 (6%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L +Y++D GR ++ ++ + +++   T   + K   S   +  + D       +E+  
Sbjct: 369 DLELAAYLVDPGRRNYSLSDLREQFFLTT--PLGKGESSLSAVGLLLDR------LESEI 420

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
             L++  LLR              ++ P+  ++  ME  GI +    + +    I + + 
Sbjct: 421 GSLEMGDLLR-------------SVEIPVARIIVGMEKAGIPVSLTRILEAKKTIEEKIA 467

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW--KTTAQDLEQINCGDN 665
            LE  IY  +G+ F++ SPKQ+G++L+ +L  P   +T  G     T  + LE +    +
Sbjct: 468 GLEAEIYREAGQTFSILSPKQVGEVLYGRLGLPPPRRTGKGSGAPSTDEEALEGL-AALH 526

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIP 724
           P+ K IL +RQL K  STY   LP    + +  R+H  ++     TGRL+S  PNLQNIP
Sbjct: 527 PLPKLILSFRQLRKFLSTYL--LPMEEGRGSDGRLHGQFNQTVAATGRLSSSRPNLQNIP 584

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
            +T+LG  +RR F++P    L+SADYSQIELR+LAH +    L + F    DIH   AA 
Sbjct: 585 ARTELGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAAL 644

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FG   E V+ + RR AKTINF I+YG+S + L+  L +  +EA   I RYF    G+  
Sbjct: 645 LFG---EPVTSESRRRAKTINFGILYGMSAYSLSQDLGVEPAEAQGIIDRYFSVVAGVGP 701

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y EK +   R+ G + T+ GR     EI S   ++R   ER A+N+ +QGSAAD+ ++AM
Sbjct: 702 YFEKIREEARRTGRIRTLLGRIRPIPEIRSDNRNVREYGERMAVNSVLQGSAADLVKKAM 761

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           + + +++    L  ++LLQ+HDEL+FEV E++  + S ++  +ME A    I L VPL V
Sbjct: 762 VDLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLSAVVRKTMEGA----IPLSVPLPV 817

Query: 965 NIKVSNNWQE 974
           +I    +W E
Sbjct: 818 SIGRGADWVE 827



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 149/282 (52%), Gaps = 9/282 (3%)

Query: 10  VDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +DG  +I+RA+Y+    ++R  DG+P  A   F NML  LL          + AVIF+  
Sbjct: 1   MDGFGYIFRAYYSKVSFMTR--DGMPTGAFTVFGNMLLSLLGTFHPR----YLAVIFESR 54

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT--Y 126
               R EI P+ KANR   PE L  Q+PL+    Q   IP +   G+EADD IA  +  +
Sbjct: 55  TGNVREEILPEIKANRTPPPEELTLQIPLIESLIQGLAIPLLSTDGYEADDTIAALSRAW 114

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +A+     V ++S DKDL+ LVS    +YD + ++      V +KWG+ P ++  L ALT
Sbjct: 115 LAQDPDARVLVMSADKDLLSLVSDRLGVYDPMTQKLFGPAEVREKWGVEPGQIPDLLALT 174

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD +DNI G+PG+G KTAA LL    ++E+++     ++ +K R  ILEY +    ++ L
Sbjct: 175 GDGVDNIGGVPGVGPKTAAALLAGGLHVEDLVTRIESVRPEKLRPKILEYRDLILRNKSL 234

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +L  D+ +    E L L       +      LE + L+ R+
Sbjct: 235 TILHEDIAVDARPEVLALGPPRMDEIRDLAARLESSTLLARI 276


>gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C]
 gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C]
          Length = 483

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 160/495 (32%), Positives = 272/495 (54%), Gaps = 26/495 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +Y++  GR S  +  ++ ++L    +      + +   D  +++   +  +  + 
Sbjct: 2   DTALAAYLVKPGRRSFALDVLSVEYLGRELQPPAADGQLAFGADDTAEA---DALMAQAR 58

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L L      KL     + +   ++ P  ++++++E  GI  D+D ++ +  + +  + 
Sbjct: 59  AVLDLGDAFTAKLPEVGAVELLHEMELPTSELLARLERAGIAADRDHMEGMEQQFAGAVQ 118

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ--------WKTTAQDLEQ 659
              +  +   G +FNL SPKQL ++ F +L  P   KTKTG         W  T  D E 
Sbjct: 119 QAVKEAHAAVGHEFNLGSPKQLQEVFFGELDLPKTKKTKTGYTTDADALAWLATQTDHEL 178

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                 P+I  +L  R+ +K++ T  + L   I     RVHT +S  +  TGRL+S +PN
Sbjct: 179 ------PVI--MLRHREQAKLRVTV-EGLVKSIAA-DGRVHTSFSQTTAATGRLSSTDPN 228

Query: 720 LQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQN+P++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  D+H
Sbjct: 229 LQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLH 288

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             VA+++FGV   +V  +MRR  K +++ + YG+S F LA QL I  +EA   ++ +F R
Sbjct: 289 TTVASQVFGVERSQVDAEMRRKIKAMSYGLAYGLSAFGLAQQLNIEPAEARGLMETFFER 348

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+ +Y+++  +  R  GY  T+FGRR +  ++NS     R   ER A+NAPIQG+AAD
Sbjct: 349 FGGVRDYLQRVVDEARATGYTATVFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAAD 408

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ V K++ +  L ++MLLQ+HDE+V E+   E     +++   M  A    + L
Sbjct: 409 IVKVAMLRVDKAIAEAGLKSRMLLQVHDEIVLEIAPGEAERVEELVRREMGAA----VEL 464

Query: 959 RVPLKVNIKVSNNWQ 973
           R PL V++ V  +W+
Sbjct: 465 RAPLDVSVGVGGDWE 479


>gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
 gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
          Length = 1042

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 151/426 (35%), Positives = 250/426 (58%), Gaps = 12/426 (2%)

Query: 555  LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            L  P L     +++ + ++ P+  V+S ME+TG  +DQ  L+Q+    S      ++  +
Sbjct: 618  LFHPVLASRGQINLLKTIELPVSRVLSAMEMTGAGVDQSRLEQMRESFSAQAEQAQQIAW 677

Query: 615  DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPII 668
              +G++ NL SPKQL  +LF  +      KTK+G   T A  L+++      N   N  +
Sbjct: 678  QEAGKEINLQSPKQLQAVLFDDMGLTPTKKTKSGGRTTNAAALQELYMRSIHNERANAFL 737

Query: 669  KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
              +L  R+++K+K     +L + I+ R  R+HT +      TGRL+S +PNLQNIP +  
Sbjct: 738  GALLRHREVNKLKQI-VQTLIDAIDVRDSRIHTTFEQTVAATGRLSSTDPNLQNIPNRNV 796

Query: 729  LGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
             G++IR AF+ S   + L+S+DYSQ+ELR++AH++    L + F +  D H+ VA+ ++G
Sbjct: 797  EGREIRGAFVASDGFESLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYG 856

Query: 788  VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            + I+++S   R H K +++ + YG+S + LA QL I  +EA     +YF  F  +H+Y+E
Sbjct: 857  IPIDQISSDQRSHIKAMSYGLAYGLSTYGLAQQLGISPAEADILRAKYFSTFGKVHDYLE 916

Query: 848  KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                  ++ GY ET+FGRR ++ ++ S +  +R+  ERAA+NAPIQGSAADI + AM   
Sbjct: 917  SLVAQAKKRGYTETMFGRRRYFPDLRSSRRQLRDAAERAALNAPIQGSAADIMKIAMKKA 976

Query: 908  HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            ++ L+D  + ++++LQIHDELV E+   E    + ++  +ME A    + L VPL V+  
Sbjct: 977  YQDLKDAGVKSRIILQIHDELVVELAPGEQEQVTAMVKEAMEHA----VKLAVPLDVSTG 1032

Query: 968  VSNNWQ 973
            V ++WQ
Sbjct: 1033 VGSDWQ 1038



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/271 (38%), Positives = 147/271 (54%), Gaps = 20/271 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L +VDG S  +RA++A P  S    DG   NAI GF  ML ++L++ +     SH A
Sbjct: 16  DRRLLVVDGHSLAFRAYFALPADSFSTSDGQATNAIYGFTTMLAQVLRDEKP----SHVA 71

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFRN++ P YK  R   PE LL QLPL++   +A  I  +E QGFE DDIIA
Sbjct: 72  IAFDVKGGTFRNQMLPQYKGTRDAAPEDLLSQLPLIQEVLKALDISYVERQGFEGDDIIA 131

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPP 176
           T   + E+ GF   ++S D+D  QLV  + T LY        D++H     V  K+ + P
Sbjct: 132 TLATMGEEAGFETFVLSGDRDAFQLVDDSITVLY--PGHHFKDLQHMTPDAVFAKYKVTP 189

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENI 233
            +   L A+ G+  DNIPG+PG+G   AA  ++EYG L  I+ +A  I  KK    R+NI
Sbjct: 190 GQYPDLAAMRGEQADNIPGVPGVGDGYAAKWIKEYGGLAGIVEHADEIGGKKGQALRDNI 249

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
               +   L+RK+  L  +V + + L+   L
Sbjct: 250 ----DQVLLNRKVNALVRNVDLGVSLDEFKL 276


>gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 907

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 166/513 (32%), Positives = 276/513 (53%), Gaps = 12/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G ++ G   D  L +Y++  GR S  + +++   L Y  +E+  
Sbjct: 400 KVLHNAKGVMRVFAEHGWTVEGVSMDTALAAYLVKPGRRSFALDALS---LEYLGRELEP 456

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +  +   +   +D   +  A+   +  IL L      +L       +   ++ P   +++
Sbjct: 457 AATADGQLAFGADEGAEADALMVQARAILDLGEAFGERLKEVGSADLLRDMELPTSALLA 516

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++E  GI  D+  L+ +    +  +    +  +  +G +FNL SPKQL ++LF +L  P 
Sbjct: 517 RLERHGIAADKAHLEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELGLPK 576

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               DN +   +L  R+ +K++ T  + L   I     R+HT
Sbjct: 577 TKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 634

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 635 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAH 694

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H  VA+++FGV    V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 695 LSEDEGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 754

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I   EA   +  YF RF G+ +Y+ +  +  R  GY ET+FGRR +  ++NS     R
Sbjct: 755 LNIDAGEARALMDTYFERFGGVRDYLRRAVDEARATGYTETLFGRRRYLPDLNSDNRQRR 814

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM++V ++L++  L ++MLLQ+HDE+V E+   E    
Sbjct: 815 ETAERMALNAPIQGTAADIVKIAMLNVDRALQEANLKSRMLLQVHDEIVLEIAPGERAKT 874

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +++   M  A    + LR PL V++    +W+
Sbjct: 875 EELVRREMASA----VQLRAPLDVSVGDGGDWE 903



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/254 (39%), Positives = 144/254 (56%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 20  LMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 75

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E + +YKANR K P+    Q+ L+     A       + GFEADDIIAT  
Sbjct: 76  DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAQRFAVDGFEADDIIATLA 135

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EGF V I++ D+D  QLVS  TT LY T  V E  +   E V +K+G+ P +   
Sbjct: 136 TQAEAEGFEVLIVTGDRDSFQLVSDHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPD 195

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++     +K K   +N+ ++ E+ +
Sbjct: 196 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKGKV-GQNLRDHLESVK 254

Query: 242 LSRKLVMLRTDVPI 255
           L+R+L  +  DV +
Sbjct: 255 LNRRLTEMVRDVEL 268


>gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
 gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
          Length = 869

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 188/532 (35%), Positives = 296/532 (55%), Gaps = 14/532 (2%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504
           T +++  LK FF  +     G+NIK D   L   GI +     D+ L  ++++ G     
Sbjct: 348 TDDVIKPLKDFFGRKDTEFYGYNIKRDSHALKNAGIHVNNIALDLALAEHLINGGAKISY 407

Query: 505 IASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
              +A   L  +     K   + S+PI K   +  Q      S++      LL+ +L  +
Sbjct: 408 QTLLADLGLVSSAGRYGKEWGQLSLPIQKSPPNPAQYFGEFVSHLPTIKETLLK-ELKSK 466

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +  ++  ++ P+  V+  +E  G+ +D + L+ +   +S+ L  L ++IY L+G  FN+
Sbjct: 467 NIEDIFFNMEMPLEKVLFTIERNGMPLDVEDLQNLEKILSEELAILADDIYALAGSPFNI 526

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            SPKQL ++L+ KL      K ++    T A+ LE +  G++ +I+ IL +R + K+ ST
Sbjct: 527 KSPKQLAEVLYNKLGLTPVDKARS----TKAEVLEAMT-GEHDVIEKILAFRSVEKLLST 581

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPT 742
           Y  +LP  ++  T R+H  ++   T+TGRLA  +PNLQNIPI+++ G+ +R+AF  +   
Sbjct: 582 YVRALPKQVDPCTFRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCDTHQN 641

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
              +SADYSQIELR LAH+++   L   FE+  D+H   A+++F V +EKV+ Q R  AK
Sbjct: 642 TYFLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQAK 701

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           T+NF IIYG   + L+  L+I  SEA   I  YF R+P +  +I +T +   +N  V+T+
Sbjct: 702 TVNFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPDVARFINETVSQACENLRVKTL 761

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GR    D      +S R  + R A+N  IQGSAA++ + AM+ +  +LE  KL ++MLL
Sbjct: 762 LGRERIIDNWTEFSNS-RAASGRLAVNTRIQGSAAELIKLAMLQLSDALEKRKLRSRMLL 820

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+FEVPEEE      ++   ME A +    L VPL VNI +  NW E
Sbjct: 821 QIHDELIFEVPEEEKEEMQTLVRDIMESAMI----LSVPLVVNILIGKNWAE 868



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 150/263 (57%), Gaps = 18/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +F++D S F++RA++A P + +   G    A+ GF   + KL+    KE   +H   +FD
Sbjct: 4   IFILDASGFVFRAYFALPDM-KNSSGKGTQAVFGFIRSINKLI----KEFSPNHMVAVFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R EIY DYK+NR K  E L  Q+P+V+      G+  +E++G EADD+IA+ +
Sbjct: 59  GPNNKQSRREIYADYKSNREKKEEDLYQQIPVVKEYCNLLGLSHLEVEGVEADDVIASVS 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQA 184
            +A  EG+ V I + DKDL+QLVSP   + +  K++  ID   V+  +G+PP ++    A
Sbjct: 119 KLAIAEGYEVCICTADKDLLQLVSPNVVVINPWKDQPPIDENGVVNIYGVPPCRIPDYLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-----INASRIKQKKRRENILEYAET 239
           L GD+ DNIPG+ G G K AA LLQ+Y ++E IL     +  S  K    +++IL     
Sbjct: 179 LVGDTSDNIPGVSGCGPKKAAALLQKYHSVEGILEHLDELTGSTHKMFSEQKDIL----- 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262
             LS+ L +L  +VP+   ++ L
Sbjct: 234 -LLSKDLAVLNNNVPLPTEIKDL 255


>gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
 gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
          Length = 908

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/403 (37%), Positives = 232/403 (57%), Gaps = 9/403 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P++ V+++ME  GI  D   L  + +  +          +    + FNL SPKQL +
Sbjct: 508 MELPVMTVLTEMEAIGITADVAHLTGLESTFAAEAAEAVAAAHAAVDQTFNLRSPKQLQE 567

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           ILF KL  P   +TKTG + T A  L  +     +P+++ IL  R   K+K T +  L  
Sbjct: 568 ILFDKLGMPKTKRTKTG-YTTDADSLAGLYATTQHPVLEAILRHRDREKLKQTVSGLLAE 626

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISAD 749
                  R+HT Y      TGRL+S +PNLQNIP++TD G++IR+ FI +   + L++ D
Sbjct: 627 VAED--GRIHTTYQQNVAATGRLSSKDPNLQNIPVRTDAGRRIRQGFIVTEGFETLMTCD 684

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE+RI+AH++    L + F++  D+H  VAA +F V    V  + RR  K +++ + 
Sbjct: 685 YSQIEMRIMAHLSGDEGLIEAFKSGEDLHTTVAARVFNVEPGSVDAEQRRRIKAMSYGLA 744

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+S + L+ QL I   EA   ++ YF RF G+ +Y+       R+ GY ET+FGRR + 
Sbjct: 745 YGLSAYGLSQQLGITPEEARGLMEEYFTRFGGVRDYLRTVVEEARKAGYTETMFGRRRYL 804

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            ++NS     R++ ERAA+NAPIQGSAADI + AM++VH++L   K+ +++LLQ+HDELV
Sbjct: 805 PDLNSDNRQRRDMAERAALNAPIQGSAADIMKIAMLNVHRALVAAKVKSRVLLQVHDELV 864

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E+   E     +++   M  A      L VPL+V++    +W
Sbjct: 865 LEIAPGEAPEVEKLVRAEMASAA----ELMVPLEVSVGTGGDW 903



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 152/292 (52%), Gaps = 16/292 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAF+A P  +     G   NA  GF +ML  +L    ++   +H AV F
Sbjct: 17  LLLIDGHSMAFRAFFALPAENFSTSTGQHTNAAYGFTSMLINVL----RDEAPTHVAVAF 72

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR E YP+YK  R   PE    Q+PL++    A GI  I +  +EADDI+AT +
Sbjct: 73  DVSRKSFRTEEYPEYKDGRATTPEEFKGQVPLIQQILDALGIQWITLDNYEADDILATLS 132

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181
           + A  EG+   I S D+D  QLV+  TT LY    V E  ++  E V  K+G+ P++   
Sbjct: 133 HQAGAEGYETLICSGDRDSFQLVTGDTTVLYPVKGVSELARMTPEAVEAKYGVSPQRYRD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAE 238
           L AL G+  DN+PG+PG+G KTAA  +  Y  L+ ++  A  IK K     R+++ +   
Sbjct: 193 LAALVGEKSDNLPGVPGVGPKTAAKWITTYEGLDGVIAAADAIKGKAGQSLRDHLSDVMR 252

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            ARL++    L TD+ +    E L     +          LEF  L +R+A+
Sbjct: 253 NARLNK----LVTDLELASRPEGLAWSGWDAEATSEIFSVLEFASLRDRLAS 300


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 175/518 (33%), Positives = 288/518 (55%), Gaps = 22/518 (4%)

Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517
           HF+ IGHN+KYD K++ + + +++ + + D M+++++ + S R + D   +A +  +Y  
Sbjct: 378 HFV-IGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                  K       +   +  ++A E++ + L+ +L     L    LL + +  +   I
Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLET-PLLELAKNCEFDFI 493

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++  ME  GI++D + L+ +  +    + +L E IY L  ++FNL+SPKQ+GDILF KL
Sbjct: 494 KIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKL 553

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696
           K PS  K KTG + T  + L  +    +P I  IL++R+L+K+ STY + L    +  + 
Sbjct: 554 KLPSRKKGKTG-YSTDEKVLNAL-LDKHPAITKILDYRELAKLYSTYCEPLLKLALKDKN 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+++ +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR
Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    
Sbjct: 672 MLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L+I    A  YI++YF  F  I +Y E  KN  +QNG++ T+ GR+ ++D  N+  
Sbjct: 728 LSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKP 787

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             I  + ER +IN+ +QGSAAD+ + AM+ ++K L + K   K++LQIHDEL+FEV ++ 
Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +     ME      + L+V LK +  ++ NW +
Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 164/331 (49%), Gaps = 26/331 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLYYALKDF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++  
Sbjct: 59  SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    AL
Sbjct: 119 TCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS+K
Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLESKENAFLSKK 238

Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           L  L  ++ +       T P E  +L      +++  L+  E   L+ ++    D    N
Sbjct: 239 LASLYDNLEVQNLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292

Query: 299 I---EPVVLDINTTENKGIAIETEIDRDTTI 326
           +     +V D    ENK   I   +D+++ I
Sbjct: 293 LGFKATLVQD----ENKLFEILNTLDKESII 319


>gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 916

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 168/515 (32%), Positives = 278/515 (53%), Gaps = 18/515 (3%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G S+ G   D  L +Y++  GR S  + +++   + Y  +E+  
Sbjct: 409 KVLHNAKGAMRVFPEHGWSIAGVTMDTALAAYLVKPGRRSFALDALS---VEYLHRELAP 465

Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKL---IVEKLLHVYERLDKPMID 578
           +  +   +   +D   +  A+   +  +L L      KL      +LLH   +++ P   
Sbjct: 466 AAAADGQLAFGADDTAEAEALMTQARAVLDLGDAFAEKLDEVGARELLH---QVELPTSA 522

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           +++++E  GI  D+D L+ +  + +  +    +  +   G +FNL SPKQL ++ F +L 
Sbjct: 523 LLARLERHGIAADRDHLEAMEQQFAGAVQQAVKEAHASVGHEFNLGSPKQLQEVFFGELN 582

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KTKTG               ++ +   +L  R+ ++++ST  + L   I     R
Sbjct: 583 LPKTKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQARLRSTV-EGLIKTIGA-DGR 640

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRI 757
           +HT +S     TGRL+S +PNLQN+P++TD G+ IR  F+     + L++ADYSQIELR+
Sbjct: 641 IHTTFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRHGFVVGEGFEALMTADYSQIELRV 700

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH+++   L + F +  D+H  VA+++FGV    V  +MRR  K +++ + YG+S F L
Sbjct: 701 MAHLSEDAGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGL 760

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           + QL I   EA   +  YF RF G+ +Y+ +  +  R  GY ET+ GRR +  ++NS   
Sbjct: 761 SQQLNIDPGEARGLMDTYFERFGGVRDYLRRVVDEARATGYTETMLGRRRYLPDLNSDNR 820

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             R   ER A+NAPIQG+AADI + AM++V ++L +  LA++MLLQ+HDE+V E+   E 
Sbjct: 821 QRREAAERMALNAPIQGTAADIVKVAMLNVDRALTEAGLASRMLLQVHDEIVLELAPGER 880

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                ++   M  A     +LR PL V++ V  NW
Sbjct: 881 DRVETLVRAQMSAAA----DLRAPLDVSVGVGQNW 911



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/254 (40%), Positives = 148/254 (58%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 29  LLLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 84

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E +P+YKANR K P+    Q+ L+     A  +P   + GFEADD+IAT T
Sbjct: 85  DVSRKTWRSEEFPEYKANRSKTPDEFKGQVELIGELLDAMNVPRFAVDGFEADDVIATLT 144

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKI---DIEHVIKKWGIPPEKMVC 181
             AE EGF V I + D+D  QLVS  TT +Y T    ++     E V +K+G+ P +   
Sbjct: 145 VQAEAEGFDVRIFTGDRDSFQLVSDRTTVIYPTKGVSEVTHYTPEKVQEKYGLTPSQYPD 204

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+ + ++  A  +K K   +N  ++ E+ +
Sbjct: 205 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFDELVARAEEVKGKA-GQNFRDHLESVK 263

Query: 242 LSRKLVMLRTDVPI 255
           L+R+L  + TDV +
Sbjct: 264 LNRRLTAMVTDVEL 277


>gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
 gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
          Length = 879

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 287/519 (55%), Gaps = 22/519 (4%)

Query: 460 EHFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT 516
           +HF+ IGHN+KYD K++ + + +S+ + + D M+++++ + S R + D   +A +  +Y 
Sbjct: 377 KHFI-IGHNLKYDFKIIENNFKLSLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYE 433

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
                   K       +   +  ++A E++ + L+ +L     L    LL + +  +   
Sbjct: 434 TLHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNL-EPHLLDLAKNYEFDF 492

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           I ++  ME  GI++D   L+ +  +    +  L E IY L  ++FNL+SPKQ+GDILF K
Sbjct: 493 IKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCEDRFNLNSPKQVGDILFEK 552

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKR 695
           LK PSG K KTG + T  + L ++    +P+I  IL++R+L+K+ STY + L    +   
Sbjct: 553 LKLPSGKKGKTG-YSTDEKVLNEL-LDKHPVISKILDYRELAKLYSTYCEPLLKLALKDE 610

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
             R+++ +    T TGRL+S +PNLQNIP      +  +  FI+      IS DYSQIEL
Sbjct: 611 NSRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIEL 670

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LAH ++   L   F+N  DIH   A  IFG    + + + R  AK+INF +IYG+   
Sbjct: 671 RMLAHFSEDEKLLNAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMGYK 726

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+  L+I  + A  YI++YF  F  I  Y EK KN  + NG++ T+ GR+ ++D  N+ 
Sbjct: 727 TLSKNLKIEANLAKTYIEKYFENFTSIKSYFEKVKNEAKANGFISTLSGRKRYFDFENAK 786

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
              +  + ER +IN+ +QGSAADI + AM+ + K L   K   +++LQIHDEL+FEV +E
Sbjct: 787 PMQVA-MYERESINSILQGSAADIIKFAMLEIAKILNQDK---RLILQIHDELIFEVKDE 842

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                 +     ME      + L+V LK +  ++  W +
Sbjct: 843 LCENFVKKTSDIMENI----VKLKVKLKTSSSIAKKWGD 877



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 144/275 (52%), Gaps = 11/275 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +     D
Sbjct: 4   LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIIFALD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++I P+YK NR   P  LL Q+P+     +  G  +   +G+EADDIIA+   
Sbjct: 59  SKGKTFRSDIDPNYKKNRTPPPPELLEQIPICIEMIEKMGFMSASYEGYEADDIIASVVK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             + +   V II+ DKDL QL+    T +Y  + +   D E   +K+G+ P ++    AL
Sbjct: 119 TCKDKDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEEACFEKYGVKPYQIKDFLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R+ +LE  E A LS+K
Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRKLLLEGKENAFLSKK 238

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           L  L  D+ ++      +LE  + P+    LK LE
Sbjct: 239 LASLYEDLEVSN-----LLEKADFPQDEPLLKILE 268


>gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
 gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
          Length = 847

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 287/519 (55%), Gaps = 22/519 (4%)

Query: 460 EHFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT 516
           +HF+ IGHN+KYD K++ + + +S+ + + D M+++++ + S R + D   +A +  +Y 
Sbjct: 345 KHFI-IGHNLKYDFKIIENNFKLSLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYE 401

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
                   K       +   +  ++A E++ + L+ +L     L    LL + +  +   
Sbjct: 402 TLHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNL-EPHLLDLAKNYEFDF 460

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           I ++  ME  GI++D   L+ +  +    +  L E IY L  ++FNL+SPKQ+GDILF K
Sbjct: 461 IKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCEDRFNLNSPKQVGDILFEK 520

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKR 695
           LK PSG K KTG + T  + L ++    +P+I  IL++R+L+K+ STY + L    +   
Sbjct: 521 LKLPSGKKGKTG-YSTDEKVLNEL-LDKHPVISKILDYRELAKLYSTYCEPLLKLALKDE 578

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
             R+++ +    T TGRL+S +PNLQNIP      +  +  FI+      IS DYSQIEL
Sbjct: 579 NSRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIEL 638

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LAH ++   L   F+N  DIH   A  IFG    + + + R  AK+INF +IYG+   
Sbjct: 639 RMLAHFSEDEKLLNAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMGYK 694

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+  L+I  + A  YI++YF  F  I  Y EK KN  + NG++ T+ GR+ ++D  N+ 
Sbjct: 695 TLSKNLKIEANLAKTYIEKYFENFTSIKSYFEKVKNEAKANGFISTLSGRKRYFDFENAK 754

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
              +  + ER +IN+ +QGSAADI + AM+ + K L   K   +++LQIHDEL+FEV +E
Sbjct: 755 PMQVA-MYERESINSILQGSAADIIKFAMLEIAKILNQDK---RLILQIHDELIFEVKDE 810

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                 +     ME      + L+V LK +  ++  W +
Sbjct: 811 LCENFVKKTSDIMENI----VKLKVKLKTSSSIAKKWGD 845



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 10/244 (4%)

Query: 38  IAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
           I+GF N ++ L    + E  + +     D    TFR++I P+YK NR   P  LL Q+P+
Sbjct: 2   ISGFANFIYSL----KNEYKSDYIIFALDSKGKTFRSDIDPNYKKNRTPPPPELLEQIPI 57

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYD 156
                +  G  +   +G+EADDIIA+     + +   V II+ DKDL QL+    T +Y 
Sbjct: 58  CIEMIEKMGFMSASYEGYEADDIIASVVKTCKDKDIFVRIITQDKDLYQLIKDGKTSIYS 117

Query: 157 TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
            + +   D E   +K+G+ P ++    AL GDS DNIPG+ GIG K A  LL E+G++E 
Sbjct: 118 PISKNDYDEEACFEKYGVKPYQIKDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEG 177

Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           I  N + ++ ++ R+ +LE  E A LS+KL  L  D+ ++      +LE  + P+    L
Sbjct: 178 IYENLTLVRNERSRKLLLEGKENAFLSKKLASLYEDLEVSN-----LLEKADFPQDEPLL 232

Query: 277 KALE 280
           K LE
Sbjct: 233 KILE 236


>gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
 gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
          Length = 901

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 168/514 (32%), Positives = 273/514 (53%), Gaps = 10/514 (1%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-L 521
           K+ H  K     L   G S+ G   D  L +Y+    + S+D+  +A++ L      +  
Sbjct: 392 KVVHGGKSVWHELASRGYSLEGVVFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDT 451

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            S + ++ +    DS+    A+  +  +  L  +LR +L       +   L+ P+  V+ 
Sbjct: 452 SSDQGALDLSVGEDSEGGRLAV-RAAALTDLAEVLRGELGDRSAEPLLTELELPLSAVLV 510

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI +D D L+++     + +     + Y++ G + NL SPKQL ++LF +L  P 
Sbjct: 511 HMERHGIAMDVDYLRELEQHFGELVTGAAASAYEVIGREVNLGSPKQLQEVLFDQLDMPK 570

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             K KTG     A   +     ++P +K +L+ R  ++++ T    L +  +    R+HT
Sbjct: 571 TKKIKTGYTTDAAALADLFVKTEHPFLKFLLDHRDSTRLRQTVEGLLKSVADD--GRIHT 628

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            +      TGRL+S EPNLQNIPI+T+ G++IRRAF+     + L++ADYSQIE+RI+AH
Sbjct: 629 TFQQTIAATGRLSSTEPNLQNIPIRTEAGRRIRRAFVVGDGYETLLTADYSQIEMRIMAH 688

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L + F    D+H  V + +F V    V+P MR   K +++ + YG+S F L+ Q
Sbjct: 689 LSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAVTPAMRSKIKAMSYGLAYGLSSFGLSNQ 748

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I   EA+  ++ YF RF G+  Y+    +  R NGY  TI GRR +  ++ S     R
Sbjct: 749 LNIDVKEASKLMEDYFTRFGGVRTYLAGVVDEARANGYTATIMGRRRYLPDLTSDNRQRR 808

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
            + ER A+NAPIQGSAADI + AM+ V K +    L +++LLQ+HDEL+ EV   E+   
Sbjct: 809 EMAERMALNAPIQGSAADIIKVAMLGVEKEIAVRGLRSRLLLQVHDELILEVGHGELEEL 868

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + ++   M  A     +L VPL V++   ++W +
Sbjct: 869 TTLVREQMGSAA----DLLVPLDVSVGTGSSWHD 898



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 159/304 (52%), Gaps = 12/304 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P+       G   NA+ GF +ML  LL+        +H AV F
Sbjct: 16  LLLIDGHSMAYRAFFALPVDKFSTTSGQHTNAVHGFISMLATLLRVEEP----THVAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  + TFR E  P YK  R   PE    Q+PL++   +A  +  ++   FEADDI+AT +
Sbjct: 72  DAGSTTFRTEALPSYKGTRDATPEPFKGQVPLIKEVLEAMHVRHLDKDNFEADDILATLS 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+  G  V + S D+D +Q V+    +   VK      ++  + V  K+G+ P +   
Sbjct: 132 SQADALGMEVLVCSGDRDSLQFVNENVTVLYPVKGVSELARMTPDAVRTKYGVEPHQYPE 191

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G++ DN+PG+PG+G KTAA  + ++G+LE IL  A  IK K   E++ ++ +  R
Sbjct: 192 LAALVGETSDNLPGVPGVGPKTAAKWINQFGSLEQILDRAGEIKGKA-GESLRDHLDVVR 250

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC--DAANI 299
           L+R+L  L TDV +    + L ++  +   + +   AL+F  L  R+   +    D  N 
Sbjct: 251 LNRQLNHLLTDVELPFGPDDLRVQPWDREAMSTVFDALQFRTLRERLFAMHPSADDDENA 310

Query: 300 EPVV 303
            P V
Sbjct: 311 APAV 314


>gi|332701547|ref|ZP_08421635.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
 gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
          Length = 882

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 165/487 (33%), Positives = 262/487 (53%), Gaps = 25/487 (5%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D+ L +Y+L+    S+D       W         +  + S+ +D  +++    H   N  
Sbjct: 419 DLGLAAYLLNPEERSYD-------W---------QRLRDSLALDPDAEAV---HPQANGL 459

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
               L  +L  +L    L  +   L+ P++ V+  ME  GI ID+   +   +E++  + 
Sbjct: 460 AAKALHDVLAKRLAAANLTELLRDLEMPLVPVLVAMEQAGIAIDKAAFESFLSEVNAQIG 519

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            L   I+ ++   FN+ S +QL  +LF +L   +  KT  G   T    LE++   ++P+
Sbjct: 520 ELTSRIHAVAEMPFNIRSNQQLAQLLFDRLGLKAKGKTPGGAQSTANPVLEKLR-NEHPV 578

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           + +ILE+R L K++STY + LP   +++  R+HT ++  +T TGRL+S  PNLQNIPI+ 
Sbjct: 579 VADILEFRMLEKLRSTYLEPLPKLADEQG-RIHTTFNQLATATGRLSSSAPNLQNIPIRG 637

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
             G ++R  F + P   L +ADYSQIELR+LAH+++   L + F +  DIH   A  IF 
Sbjct: 638 PQGTRMRACFTAGPGCLLAAADYSQIELRVLAHMSQDPTLLEAFRHGQDIHARTAGLIFD 697

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +  +V+P  RR AKTINF ++YG+ P +LA +L I  ++A ++I+RYF     + E+ +
Sbjct: 698 KDAGQVAPDERRSAKTINFGLLYGMGPQKLAAELGIALAQAKEFIERYFVGLSKLKEFYD 757

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                  QNG V T+ GRR    +I+S   +++    R AIN  IQGSAADI + AMI  
Sbjct: 758 SIVKEAEQNGSVVTMLGRRRLLPDIHSRNDNLKAQAVRQAINTRIQGSAADIIKLAMIRA 817

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H   +   L  +++LQ+HDEL+ E PE     A       M++     + L VPL V++ 
Sbjct: 818 HADEKIRALGGRLILQVHDELLLETPEATAQEAGA----RMKEIMAGIVELSVPLVVDMG 873

Query: 968 VSNNWQE 974
           V  NW E
Sbjct: 874 VGRNWAE 880



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/283 (37%), Positives = 150/283 (53%), Gaps = 15/283 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+DGS+F YR FYA   +SR  DG P NA+     +L KLL+  R +    H A + D
Sbjct: 14  VYLIDGSAFFYRGFYAFRDMSRS-DGFPTNALFVVLRLLIKLLREERPK----HLAFVLD 68

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P   FR++++  YKA R   PE LL Q   +R   +  GIP I  +G EADD IA+   
Sbjct: 69  GPGKNFRHDLFKPYKAQRSATPEDLLKQNAPLRRGVELLGIPLIVSEGGEADDCIASLVT 128

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184
             + E   V I+  DKDL Q +     ++D  +K EK+  +E   ++ G+ P      QA
Sbjct: 129 RLKAE-RPVVIMGADKDLNQCLDERVFIWDPALKSEKLATLESFRQEQGMEPGHWPDYQA 187

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETAR 241
           L GDS DNIPG+PGIG KTA  ++ E+  LE I   L    +  Q K RE+I    + A 
Sbjct: 188 LIGDSSDNIPGVPGIGPKTATKIMAEHRTLEEIEAHLDELPKTLQAKLREHI----QDAY 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
             R+L  LRTD   T+ L+ L   + +  ++  FL   EF  L
Sbjct: 244 TYRQLTRLRTDFCATLGLDSLAWREPDWKQVQDFLAEYEFRSL 286


>gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054]
          Length = 895

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 163/502 (32%), Positives = 272/502 (54%), Gaps = 17/502 (3%)

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS---SIPIDKISD 535
           G S  G   D  L +Y+   GR +  +  +A+++L  +        ++   S   D+   
Sbjct: 399 GWSFAGVTADTALAAYLEKPGRRAFTLDVLAEEYLGRSLAPATAQAETGQLSFDADEPDP 458

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +  +  +  +  L  L   +L     + ++  ++ P+ +++++ME  GI  D++ L
Sbjct: 459 TAGAQALMTRARAVHDLAGLFDTRLAEVGAVELFHDMELPIAELLARMERHGIAADREWL 518

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + + A+ +  +    E  +  +G +FNL SPKQL +ILF  L  P   K KTG + T A 
Sbjct: 519 RGLEAQFAAEIQRCVEEAHAAAGREFNLGSPKQLQEILFGDLGLPKTKKIKTG-YTTDAD 577

Query: 656 DLEQI---NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            L  +      + P+I  +L  R  +K+++T  + L   ++ +  R+HT ++     TGR
Sbjct: 578 ALTWLATQTTNELPVI--LLRHRDQAKLRTT-VEGLLKTVSPQG-RIHTTFNQMVAATGR 633

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S +PNLQNIP++T+ G+ IRRAF+     + L++ADYSQIELRI+AH+++   L + F
Sbjct: 634 LSSQDPNLQNIPVRTEEGRAIRRAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAF 693

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  D+H  VA+++F V    V  +MRR  K +++ + YG+S + L+ QL I  +EA   
Sbjct: 694 TSGEDLHTTVASQVFAVAPADVDAEMRRKIKAMSYGLAYGLSAYGLSQQLGIKPAEAQGL 753

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF RF G+ +Y+       R  GY ET+ GRR +  ++ S     R + ER A+NAP
Sbjct: 754 MDTYFERFGGVRDYLHNVVEEARAVGYTETLLGRRRYLPDLTSDNRQRREMAERMALNAP 813

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM+ V ++L    L ++MLLQ+HDE+V EV   E      ++   M  A
Sbjct: 814 IQGSAADIVKIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEALVREQMAGA 873

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
                 LR PL V++    +W+
Sbjct: 874 ----YPLRAPLDVSVGAGADWE 891



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 155/279 (55%), Gaps = 10/279 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  YRAF+A P+ +     G   NA+ GF +ML   +++ R     +H AV FD
Sbjct: 1   MLLDGHSMAYRAFFALPVENFSTATGQHTNAVYGFASMLANTVRDERP----THLAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+  YP+YKANR   P+    Q+PL+     A  +P I  + FEADD+IAT   
Sbjct: 57  LSRQTFRSAEYPEYKANRSATPDEFRSQIPLIGELLDAMRVPRITAENFEADDVIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-PTTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVCL 182
            A  EGF V +++ D+D +QLV+   T LY T  V E  +   E V +K+G+ P++   L
Sbjct: 117 AAAAEGFEVLVVTGDRDSLQLVTDDVTVLYPTKGVSELTRYTPEKVAEKYGVRPDQYPDL 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+PGIPG+G KTAA  + +YG+   ++ +A  +K K   E + E+ ++ + 
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWVNQYGSFAALVEHADEVKGKI-GEKLREHLDSVKR 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           +R L  L  DV + + +  L     +   +   ++ALEF
Sbjct: 236 NRFLTELVRDVELPLGVAQLERAPFDKDEVARLMEALEF 274


>gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
 gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
          Length = 894

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/514 (32%), Positives = 282/514 (54%), Gaps = 14/514 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-KEIL 521
           K+ H  K     L   G+ + G  +D  +  Y++   R ++++A +AQ  L+        
Sbjct: 385 KVLHGFKAALKALTARGLELEGVVDDTSISGYLIQPDRRTYELAELAQHHLNVGMPAATA 444

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           K+ +  +  D  +D+   E  ++ + V+  L      +L   +   +   L+ P+  V++
Sbjct: 445 KAGQLELSFDG-NDTAAAEALVQAAAVVSALSRFFETELKERRAEELLSTLELPVSRVLA 503

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME+ GI ID D + +  A++++ +   +E  +   G + NL SPKQL  +LF +L+ P 
Sbjct: 504 DMELAGIGIDLDRMDEQLADLARVIDQAQEQAFAAIGHEVNLGSPKQLQTVLFEELQLPK 563

Query: 642 GAKTKTGQWKTTAQDLEQI--NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
             K K+G + T A  L+ +    G   +++ ++  R+ +K++    +SL   + +   R+
Sbjct: 564 TKKIKSG-YTTDAASLKNLLEKTGHEFLVQ-LMAHREAAKLRQMI-ESLKKSVAE-DGRI 619

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRIL 758
           HT Y+     TGR++S  PNLQNIPI+++ G+++R  F+ S   + L+SADYSQIE+RI+
Sbjct: 620 HTTYAQNVAATGRISSNNPNLQNIPIRSEEGRRVRGIFVVSDGYECLLSADYSQIEMRIM 679

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L Q +++  D+HR V + IF V  ++V+  MR   K +++ + YG++ F L+
Sbjct: 680 AHLSGDAGLIQAYKDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLS 739

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I   EA   +K YF RF  + +Y+    +  R +GY  TI GRR +  ++ S    
Sbjct: 740 KQLEISVDEARTLMKDYFDRFGAVRDYLRGVVDQARVDGYTSTIEGRRRYLPDLTSTDRQ 799

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R   ER A+N+PIQGSAADI +RAM+ VH  L+   L ++MLLQ+HDELV EV   E  
Sbjct: 800 LRENAERIALNSPIQGSAADIIKRAMLGVHAELQAQGLKSRMLLQVHDELVLEVAPGERA 859

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
               ++   M  A     +L VPL+V I V  +W
Sbjct: 860 AVEALVTEQMAAAA----DLSVPLEVQIGVGPSW 889



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 156/309 (50%), Gaps = 23/309 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  L ++DG S  +RAF+A P       +G   NAI GF +ML  L+    KE   +
Sbjct: 1   MTGQPRLLVLDGHSMAFRAFFALPADKFSTSNGQHTNAIHGFTSMLINLI----KEQQPT 56

Query: 60  HFAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           H AV FD     T R   Y +YK  R + P  +  Q+ L+    +A+GI  I++ G+EAD
Sbjct: 57  HIAVAFDVSDESTHRKAEYSEYKGGRNETPREMSGQIDLIGQVMEAWGIKTIKMPGYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKK 171
           DI+AT   + EK G  V ++S D+D  QL++       P   + D  + +   IE    K
Sbjct: 117 DILATLAAMGEKAGHEVLLVSGDRDAFQLITDNVFVLYPKKGVSDIPRMDAAAIE---AK 173

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---K 228
           + +PP +   L AL G++ DN+PG+PG+G KTAA  +  YG LE +L +   I  K    
Sbjct: 174 YFVPPSRYSDLAALVGETADNLPGVPGVGPKTAAKWINLYGGLEGVLEHLDSIGGKVGDS 233

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            REN+    +  + +R+L  L TD+ + + L+ L     +   L      LEF  + +R+
Sbjct: 234 LRENV----DNVKRNRRLNQLHTDLELPVTLDDLYEPRPDQAALEDLFDELEFKTIRSRL 289

Query: 289 ATTYDCDAA 297
              Y  D A
Sbjct: 290 FALYGNDDA 298


>gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE]
 gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE]
          Length = 903

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 165/513 (32%), Positives = 276/513 (53%), Gaps = 12/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V    G  + G   D  L +Y++  GR S  + ++A ++L    +E+  
Sbjct: 396 KVMHNAKNALRVFPEQGWRLEGVSMDTALAAYLVKPGRRSFALDALAVEYLG---RELAP 452

Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +  +   +   +D + +  A+   +  +L L      +L       +   ++ P   +++
Sbjct: 453 APSADGQLAFGADDRAEADALMAQARAVLDLGEAFAVRLEEVGATGLLHDMELPTSILLA 512

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++E  GI  D+  L+ +  + +  +    +  +   G +FNL SPKQL ++LF +L  P 
Sbjct: 513 RLERHGIAADRSHLEGMEQQFAGAVQQAVKEAHAAVGREFNLGSPKQLQEVLFGELALPK 572

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               ++ +   +L  R+ +K++ T  + L   I +   R+HT
Sbjct: 573 TKKTKTGFTTDADALAWLAAQTEHELPVIMLRHREQAKLRVTV-EGLIKTIGQ-DGRIHT 630

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 631 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAH 690

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H  VA+++FGV+   V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 750

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I   EA   +  YF RF G+ +Y+ +     R  GY ETI GRR +  ++NS     R
Sbjct: 751 LNIDAGEARGLMDTYFQRFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRR 810

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+   E    
Sbjct: 811 EAAERMALNAPIQGTAADIVKVAMLHVDRALTEARLTSRMLLQVHDEIVLEIAAGEREQV 870

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +I+   M  A    + LR PL V++ V  +W+
Sbjct: 871 EEILRREMSTA----VELRAPLDVSVGVGRDWE 899



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 139/254 (54%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NA+ GF +ML     N+ ++   +HFAV F
Sbjct: 16  LLLMDGHSLAYRAFFALPAENFTTATGQPTNAVYGFMSML----ANTLRDEAPTHFAVAF 71

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R   +P+YKANR K P+    Q+ L+     A       + GFEADD+IAT  
Sbjct: 72  DVSRKTWRATEFPEYKANRSKTPDEFKGQVELIGELLDAMHADRFAVDGFEADDVIATLA 131

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QL++   T LY T  V E  +   E V +K+G+ P +   
Sbjct: 132 TQAEAAGFEVLIVTGDRDSFQLITDDVTVLYPTKGVSELTRFTPEKVQEKYGLTPGQYPD 191

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ +  +
Sbjct: 192 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKA-GQNFRDHLDAVK 250

Query: 242 LSRKLVMLRTDVPI 255
           ++R L  +  DV +
Sbjct: 251 MNRVLTEMVRDVEL 264


>gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 906

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 166/513 (32%), Positives = 273/513 (53%), Gaps = 12/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G ++ G   D  L +Y++  GR S D+ ++    L Y  +E+  
Sbjct: 399 KVLHNAKGAMRVFAEHGWTIEGVTMDTALAAYLVKPGRRSFDLDALT---LEYLGRELAP 455

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
              +   +   +D + +  A+   +  IL L      +L       +   ++ P   +++
Sbjct: 456 PAAADGQLAFGADEEAEADALMVQARAILDLGEAFTGRLKEVGAADLLGDMELPTSALLA 515

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI  D+  L+ +    +  +       +  +G +FNL SPKQL ++LF +L  P 
Sbjct: 516 RMERHGIAADRAHLESMEQMFAGAVQQAVREAHAAAGHEFNLGSPKQLQEVLFGELGLPK 575

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               +N +   +L  R+ +K++ T  + L   I     R+HT
Sbjct: 576 TKKTKTGYTTDADALAWLAAQTENELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 633

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 634 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAH 693

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H   A+++FGV    V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 694 LSEDAGLIEAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 753

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I  +EA   ++ YF RF G+ +Y+ +     R  GY  T+FGRR +  ++NS     R
Sbjct: 754 LGIEAAEARTLMEAYFERFGGVRDYLRRVVEEARATGYTATLFGRRRYLPDLNSDNRQRR 813

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM+ V ++L    LA++MLLQ+HDE+V E+   E    
Sbjct: 814 EAAERMALNAPIQGTAADIVKIAMLRVGEALRAAGLASRMLLQVHDEIVLEIAPGERERV 873

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             ++   M  A    ++L+ PL V++ V  +W+
Sbjct: 874 EALLRREMTTA----VHLKAPLDVSVGVGRDWE 902



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/254 (39%), Positives = 143/254 (56%), Gaps = 10/254 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 19  LMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 74

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E + +YKANR K P+    Q+ L+     A       ++GFEADDIIAT  
Sbjct: 75  DVSRKTWRSEEFTEYKANRSKTPDEFKGQVQLIGELLDAMHADRFAVEGFEADDIIATLA 134

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QLVS   T LY T  V E  +   E V++K+G+ P +   
Sbjct: 135 TQAEAAGFDVLIVTGDRDSFQLVSEHVTVLYPTKGVSELTRFTPEKVLEKYGLTPSQYPD 194

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++     +K K   +N+ E+ E+ +
Sbjct: 195 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVEEVKGKA-GQNLREHLESVK 253

Query: 242 LSRKLVMLRTDVPI 255
           L+R+L  L   V +
Sbjct: 254 LNRRLTELERQVEL 267


>gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 866

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 161/417 (38%), Positives = 243/417 (58%), Gaps = 13/417 (3%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           K+  + +  V   +D P+I  +  ME  GI++D++ +  +S E+ + L ++ E +Y+ +G
Sbjct: 455 KIAAQNMTRVMNEIDLPLIPSLIGMERRGIRLDREKMLALSRELERQLNAITEKVYEAAG 514

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDN-PIIKNILEWR 675
            + NL+SPKQ+G++LF KL  P   KTKTG + T    LEQ+   CG    I   +LE+R
Sbjct: 515 CEINLNSPKQIGELLFEKLGLPVVKKTKTG-YSTDVSVLEQLREICGARCEIPGQLLEYR 573

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           +L K+ S +   L +          TF SL +T TGRL+S +PN+QN+P  +  GQ+IR 
Sbjct: 574 ELQKMASGFVQPLLSAAGGDGLIHSTFESL-TTGTGRLSSRDPNMQNLPTYSGWGQRIRE 632

Query: 736 AFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
             I S P     +ADYSQIELR+LAH++    L ++F +  DIH   AA IFG+  + V+
Sbjct: 633 CLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIFNSDRDIHTETAAMIFGLPADAVT 692

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            ++RR AKT++F +IYG+S F LA++L   R+ A   +  YF   PG+ EY+E +K    
Sbjct: 693 KELRRSAKTVSFGLIYGMSVFGLASRLGTDRNTAFQIMDAYFAALPGVREYMETSKKKSL 752

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           + GY  T+FGRR   DEI +  +  ++  +R AINAPIQG+AADIT+ AM  V       
Sbjct: 753 EFGYTSTLFGRRRPMDEIAT-GNQTKDHQKRVAINAPIQGTAADITKIAMNKVAAHFAGR 811

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
            +A  M+LQ+HD +V E P ++    +  +   ME A    ++L VPLK    V  +
Sbjct: 812 DVA--MVLQVHDSIVCECPHDQAEQTALELSQVMESA----VHLSVPLKTERTVGTS 862



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/250 (38%), Positives = 142/250 (56%), Gaps = 10/250 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG    +RAFYA P L+   DG P NA+ GF NM  ++  + R + I +     FD
Sbjct: 8   ILLIDGHGIAFRAFYAIPELNAP-DGTPTNALVGFFNMFARVRHDQRPDEIYA----AFD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +YP+YKA R   PE    Q+PL+       G+  +E    EADD+I +   
Sbjct: 63  MKEPTFRHRLYPEYKATRRPTPEEFKIQVPLLHEMLPLLGVHIMERPSVEADDLIGSAAV 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                G  V I+++DKD+MQ++ P   +    K     E+ D+ H  +K+G PP+ MV  
Sbjct: 123 QFASRGDEVLILTSDKDIMQVLRPGVKILRPGKGVSSFEEYDVPHFTEKYGFPPDTMVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GDSIDNIPG+PG+G KTA+ LLQ YG++E I+ +A  +K   +++ I E+   A  
Sbjct: 183 LSLMGDSIDNIPGVPGVGEKTASKLLQSYGSIEGIMEHAGELKPALQKK-IEEHGAQAVA 241

Query: 243 SRKLVMLRTD 252
           +RKL  L+ D
Sbjct: 242 NRKLTRLKCD 251


>gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
 gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
          Length = 982

 Score =  273 bits (699), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 255/438 (58%), Gaps = 12/438 (2%)

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           ++++ +I +L   L P++   +   + +R++ P+  V+  ME  G ++D   L  +    
Sbjct: 546 LQHAAIIAELARALAPQIDQREQFGLLQRMELPVSHVLYGMESQGAKVDMQRLTSMRDTF 605

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-- 660
           + +    +E  +D +G   NL SPKQLG +LF  +      +TKTG + T A  L+++  
Sbjct: 606 AADARQAQEIAWDYAGTTVNLQSPKQLGKVLFEDMGLKPTKRTKTGGYTTNADALQKLYF 665

Query: 661 NCGDN----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
              D+      +  +L  R+ +K+K   A +L +  N   +R+HT +      TGRL+S+
Sbjct: 666 TYADDERASGFLGALLRHRETNKLKQIVA-TLIDATNPADERIHTTFEQTVAATGRLSSV 724

Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP +   G++IR AF+     + L+S DYSQ+ELRI+AH++    L + F++  
Sbjct: 725 DPNLQNIPNRNAAGREIRSAFVPGEGFESLMSCDYSQVELRIMAHLSGDESLIEAFKSGA 784

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D H+ VA+ + GV +++++P  R H K +++ + YG+S + LA QL+I  SEA     +Y
Sbjct: 785 DFHKYVASLVHGVPVDQITPDQRSHVKAMSYGLAYGLSSYGLAQQLKIRPSEAEALKAKY 844

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  F  +H+++E   +  R+ GY ET+FGRR ++  + S   + R+  ERAA+NAPIQGS
Sbjct: 845 FATFGKVHDFLESCVSEARKRGYTETMFGRRRYFPALKSTNRAARDAAERAALNAPIQGS 904

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI   ++L +  + ++++LQIHDELV E+   E    S ++  +ME A    
Sbjct: 905 AADIMKIAMIRARRALAEAGMKSRIILQIHDELVVEIAPGEREQVSALVRDAMENA---- 960

Query: 956 INLRVPLKVNIKVSNNWQ 973
           ++L VPL V+  V  +WQ
Sbjct: 961 VHLDVPLDVSTGVGADWQ 978



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 157/297 (52%), Gaps = 11/297 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H AV F
Sbjct: 13  LLVVDGHSLAFRAFFALPVENFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLAVAF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRN + P YK  R   PE LL QLPL++    A G+  IE  G+E DD+I T  
Sbjct: 69  DVKGGTFRNTMLPQYKGTRDAAPEDLLSQLPLIQSMLDALGVTYIEKPGYEGDDVIGTLA 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKEEK-IDIEHVIKKWGIPPEKMVC 181
            + E+  +   ++S D+D  QLV    T LY     K+ K +  E V  K+ + P +   
Sbjct: 129 TMGEQAKYKTLVLSGDRDAFQLVDDWVTVLYPGHHFKDLKHMTPEAVFAKYKVTPAQYPD 188

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G++ DNIPG+PG+G   AA  + +YG+LE I  +A  I  KK  E++ E  +  +
Sbjct: 189 LAALRGETADNIPGVPGVGDGFAAKWINQYGSLEGICEHADEIGGKK-GESLRENLDQVK 247

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
           L+RK+  L  D+ + + ++ L     +  ++     +LEF ++   R+  T++   A
Sbjct: 248 LNRKVNALVRDIDLGVTVDDLTFGHFDAAKIDELFTSLEFGSRTKTRILKTFNGGEA 304


>gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
 gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
          Length = 932

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 180/534 (33%), Positives = 288/534 (53%), Gaps = 40/534 (7%)

Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K  ++ K  +  LH +G  M G   DI ++ Y+++   +    A + ++ L +   E   
Sbjct: 411 KTVYDAKSLRHALHAHGWEMHGAVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDE--- 467

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLW------------LLLRPKLIVEKLLHVY 569
             K S  I KIS+    +  +E + N   Q W             LL+ +  +E+L H  
Sbjct: 468 --KPS-DISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIYAYALLQMQPTLEQLAHFR 524

Query: 570 E-----RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +      L+ P+  ++ +ME TGI ID   L + +  +   +   +++ +D  G + NLS
Sbjct: 525 QVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLS 584

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKST 683
           SPKQL ++LFT+L+ P   KTKTG   T A+ LE++     +P ++ +L  R   K+   
Sbjct: 585 SPKQLQEVLFTQLQLPKTKKTKTGY-TTDAKALEELARYNPHPFLEALLYHRDRIKLLQ- 642

Query: 684 YADSLPNHINKRTQ---RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739
               +  ++ +R     R+HT +      TGRL+S++PNLQNIP +T  GQKIR AF+  
Sbjct: 643 ----IVRNLRERVADDGRIHTTFGQTVAATGRLSSIDPNLQNIPARTVDGQKIREAFVPQ 698

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            P   L++ADYSQIE+RI+AH++    L   F +  D+HR VAA ++GV  ++V+P  R 
Sbjct: 699 KPYTALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRS 758

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           H K  ++ + YG+S + LA QL I + +A   +  YF RF  + EY+ +      + GY 
Sbjct: 759 HVKATSYGLAYGLSAYGLAAQLNISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYT 818

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+ GRR +  E+ S   ++ +   RAA+NAPIQGSAAD+ + AM+ V   L   +L ++
Sbjct: 819 ETMQGRRRYLPELRSTNRNVADNARRAALNAPIQGSAADLMKAAMLQVDADLRQEQLQSR 878

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +LLQ+HDELV EV   E      ++  +M         LRVPL+V++ +  NW+
Sbjct: 879 VLLQVHDELVLEVAPGETERLEALVRQAMTGVA----KLRVPLEVSVGIGPNWR 928



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 164/314 (52%), Gaps = 13/314 (4%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFY+  P   R   G+  NA+ GF +ML  +++  +     +H    F
Sbjct: 6   LLVLDGHSLAFRAFYSRDPEHFRTSTGVYTNAVHGFFSMLLTMIRAEKP----THIGAAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR +IYPDYK  R + P   + Q+  ++    A GI  +     EADDI+AT  
Sbjct: 62  DLSRHSFRTDIYPDYKGGRAETPLEFIGQVENIQKMLSAMGIKWLTEPNVEADDILATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYD--TVKEEKIDIEHVIK-KWGIPPEKMVC 181
               K G  V + S D+D  QL+S   T LY   ++ E K      +K ++ + P++   
Sbjct: 122 TKGTKSGMEVLVSSGDRDSFQLISDDVTVLYPGRSISETKRMTPQAVKDRYDVWPQQYPE 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL G+  DN+PG+P +G K AA  + EYG+L+++L +   +K  KR EN+ ++ +   
Sbjct: 182 IAALVGEHADNLPGVPLVGEKVAASWINEYGSLDSLLEHRDELK-GKRGENLRQHVDDVL 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTYDCDAAN 298
            +R+L  LRTD+ + + LE L     +   +    + LEF ++   I ++   +   + N
Sbjct: 241 RNRQLNRLRTDLQLPLSLEDLHWTGIDPQAIQEICEELEFKQMRTQILKLGQAFGVTSIN 300

Query: 299 IEPVVLDINTTENK 312
            +   +++++T+ +
Sbjct: 301 GDSATMELDSTQTE 314


>gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
 gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
          Length = 891

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 152/403 (37%), Positives = 237/403 (58%), Gaps = 10/403 (2%)

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLGDIL 633
           P+I V+++ME TGI +D D L  +    +  +   +++ +D + G++ NL SPKQL  +L
Sbjct: 493 PLIHVLAKMERTGIAVDVDGLSTLEETFAAKVTQAQQDCWDAIGGDQINLGSPKQLQVVL 552

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           F  L  P   KTKTG   T A  L +++   ++P ++ +L  R  +K++ T  + L   +
Sbjct: 553 FETLGMPKTKKTKTGY-TTDADALAELHAKTEHPFLEALLRHRDAAKLRVT-VEGLQKSV 610

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYS 751
           +    R+HT Y      TGRL+S EPNLQN+PI+T+ G++IR  F+       L+SADYS
Sbjct: 611 SD-DGRIHTTYLQTIAATGRLSSTEPNLQNVPIRTEEGRRIRELFVVGDGYDALMSADYS 669

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIE+R++AH++  + L + F +  D+HR V +++FGV  E V+  MR   K +++ + YG
Sbjct: 670 QIEMRVMAHLSGDSGLIEAFRSGEDLHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYG 729

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +S + L+ QL I   EA   ++ YF RF G+  Y+++     R  G+  T+FGRR +  +
Sbjct: 730 LSAYGLSKQLAISTEEAKGLMEGYFARFGGVRAYLDEVVAEARGTGFTATMFGRRRYLPD 789

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           + S     R + ER A+NAPIQGSAADI + AMI V ++L +    T++LLQ+HDELV E
Sbjct: 790 LTSDNRQRREMAERMALNAPIQGSAADIMKVAMIGVDRTLTEAGARTRILLQVHDELVLE 849

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           V  +E     +I+   M  A      + VPL VNI V  +W +
Sbjct: 850 VAADEQADVERIVREQMGHAA----EMDVPLDVNIGVGRSWHD 888



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 156/293 (53%), Gaps = 18/293 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           + L L+DG S  YRAFYA P      ++ +H     NA+ GF +ML  +L++ +     +
Sbjct: 2   SRLLLLDGHSLAYRAFYALPAENFSTVTGQH----TNAVYGFTSMLINMLRDEQP----T 53

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E Y +YKA R + P+    QLPLV+    A  I   E+ G+EADD
Sbjct: 54  HVVVAFDKSRHTFRTEEYAEYKAGRARTPDEFAGQLPLVKEVLDALRIRYCELDGYEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIP 175
           IIAT    A+ +G  V I S D+D  QLVS   T LY    V E  ++    + +K+G+P
Sbjct: 114 IIATIASEADTKGVEVLICSGDRDTFQLVSDHVTILYPVRGVSEVWRMGPAQIEEKYGVP 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +   L A+ G+S DN+PG+PG+G KTAA  + ++G LE I+    +IK K   E + +
Sbjct: 174 PARYSDLAAMVGESSDNLPGVPGVGPKTAAKWITQFGGLEGIVAGIDQIKGKA-GEALRD 232

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + +    +R+L  L  D P+   ++ L     +   +      LEF  L +R+
Sbjct: 233 HLDQVLRNRRLNQLVKDAPVGCTIDDLERAQWSREEVHEVFDRLEFRVLRDRL 285


>gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331]
          Length = 903

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/513 (32%), Positives = 276/513 (53%), Gaps = 12/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    VL   G  + G   D  L +Y++  GR S  + ++A ++L    +E+  
Sbjct: 396 KVLHNAKNALRVLPEQGWRLEGISMDTALAAYLVKPGRRSFALDALAVEYLG---RELAP 452

Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +  S   +   +D + +  A+   +  +L L      +L       +   ++ P   +++
Sbjct: 453 APASDGQLAFGADDRAEADALMAQARAVLDLGDAFTTRLKEVGATELLYDMELPTSIMLA 512

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++E  GI  D+  L+ +  + +  +    +  +   G +FNL SPKQL ++LF +L  P 
Sbjct: 513 RLERHGIAADRAHLESMEQQFAGAVQQAVKEAHAAVGREFNLGSPKQLQEVLFGELALPK 572

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               ++ +   +L  R+ +K++ T  + L   I     R+HT
Sbjct: 573 TKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 630

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 631 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAH 690

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H  VA+++FGV    V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 750

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I   EA   +  YF RF G+ +Y+ +     R  GY ETI GRR +  ++NS     R
Sbjct: 751 LNIEAGEARGLMDTYFLRFGGVRDYLHRVVEEARSTGYTETILGRRRYLPDLNSDNRQRR 810

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+ + E    
Sbjct: 811 EAAERMALNAPIQGTAADIVKVAMLKVDRALTEAELTSRMLLQVHDEIVLEIAKGEREQV 870

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +I+   M  A    + LR PL V++ V  +W+
Sbjct: 871 EEILRREMSTA----VELRAPLDVSVGVGRDWE 899



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/261 (36%), Positives = 143/261 (54%), Gaps = 11/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  YRAF+A P  +     G P NA+ GF +ML     N+ ++   +HFAV 
Sbjct: 15  RLLLMDGHSLAYRAFFALPAENFTTATGQPTNAVYGFMSML----ANTLRDEAPTHFAVA 70

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    T+R + +P+YKANR K P+    Q+ L+     A       + GFEADD+IAT 
Sbjct: 71  FDVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMRADRFAVDGFEADDVIATL 130

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMV 180
              AE  GF V I++ D+D  QL++   T LY T  V E  +   E V +K+G+ P +  
Sbjct: 131 ATQAEAAGFEVLIVTGDRDSFQLITDNVTVLYPTKGVSELTRFTPEKVQEKYGLTPGQYP 190

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ +  
Sbjct: 191 DFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKA-GQNFRDHLDAV 249

Query: 241 RLSRKLVMLRTDVPI-TIPLE 260
           +++R L  +  DV +  +P E
Sbjct: 250 KMNRVLTEMVRDVELPKVPAE 270


>gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
 gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
          Length = 920

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 166/521 (31%), Positives = 283/521 (54%), Gaps = 27/521 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G S+ G   D  L +Y++  GR S ++ +++ ++L       + 
Sbjct: 412 KVLHNAKGIMRVFAEHGWSVAGVTMDTALAAYLVKPGRRSFELDALSVEYLGRELSPAVA 471

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +    +     +D + +  A+   +  IL L      +L       +   ++ P+ ++++
Sbjct: 472 ADSGQLAFG--ADDEAERDALMIKARTILDLGEAFGGRLKDVGAAGLLHDMELPVSELLA 529

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME +GI  D+  L+++  + +  +    +  +   G +FNL SPKQL ++LF +L  P 
Sbjct: 530 RMERSGIAADRGWLERMEQQFAAAVQHAVQEAHAAVGHEFNLGSPKQLQEVLFGELGLPK 589

Query: 642 GAKTKTGQ--------WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
             KTKTG         W     D E       P+I  +L  R+ ++++ST  + L   I 
Sbjct: 590 TKKTKTGYTTDADALAWLAGQTDHEL------PVI--MLRHREQARLRSTV-EGLIKTIA 640

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQ 752
             + R+HT ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQ
Sbjct: 641 PGS-RIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGDGFESLMTADYSQ 699

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELR++AH+++   L + F +  D+H  VA+++F V+   V P+MRR  K +++ + YG+
Sbjct: 700 IELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFSVDKSAVDPEMRRKIKAMSYGLAYGL 759

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL I   EA   ++ +F RF G+ +Y+++     R  GY ET+ GRR +  ++
Sbjct: 760 SAFGLSQQLGITPDEARKLMENFFERFGGVRDYLQRVVEEARATGYTETMLGRRRYLPDL 819

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S     R + ER A+NAPIQG+AADI + AM+ V  +L   KL+++MLLQ+HDE+V E+
Sbjct: 820 TSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVDAALTGEKLSSRMLLQVHDEIVLEI 879

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              E     +++   M  A      L  PL V++   ++W+
Sbjct: 880 APGERERVEELVRREMTGA----FGLSAPLDVSVGSGSDWE 916



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/280 (37%), Positives = 151/280 (53%), Gaps = 10/280 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G   NAI GF +ML     N+ ++   +H AV F
Sbjct: 32  LLLLDGHSLAYRAFFALPAENFNTTTGQTTNAIYGFTSML----ANTLRDEQPTHLAVAF 87

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E + +YKANR   P+    Q+ L+     A  I    + GFEADD+IAT  
Sbjct: 88  DVSRKTWRSEQFTEYKANRSASPDEFKGQVELIGELLDAMNITRFAVDGFEADDVIATLA 147

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE++GF V I++ D+D  QLV+   T LY T  V E  +     V +K+G+ P +   
Sbjct: 148 TQAEEQGFDVLIVTGDRDSFQLVTDHVTVLYPTKGVSELTRFTPGKVQEKYGLTPSQYPD 207

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+ + ++  A  +K K   E + ++ E+ +
Sbjct: 208 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFKELVERADEVKGKV-GEKLRDHLESVK 266

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           L+R+L  L  DV +    E L     +   L   L ALEF
Sbjct: 267 LNRQLTELVRDVELAAGPEGLGRTPYDREALSVILDALEF 306


>gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3]
 gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3]
          Length = 869

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 185/530 (34%), Positives = 301/530 (56%), Gaps = 14/530 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG-RSSHDI 505
           ++++ L+ FF+ +     G+NIK D   L   GI +     D+ L  ++++ G + S+  
Sbjct: 350 DVITPLRDFFKRKDTEFYGYNIKRDNHALKNAGIHIHNITLDLALAEHLINGGAKISYQT 409

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
             +    +    K   +  + S+PI K S ++  E+  E  + + ++   L  +L V+ L
Sbjct: 410 LLVDHGLVESAGKYGKEWGQLSLPILK-SPAKPAEYFGEFVSHLPKIKKSLLEELKVKGL 468

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             ++  ++ P+  V+  +E  G+ +D + L+++   +S+ L  L ++IY ++G  FN+ S
Sbjct: 469 EDLFFNMEMPLEKVLFTIERNGMPLDVEDLQELERTLSEELAILTDDIYTVAGTSFNIKS 528

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQL D+L+ KL      K ++ + +  A  L     G++ I++ IL +R + K+ STY 
Sbjct: 529 PKQLSDVLYNKLGLTPIDKARSTKAEVLAALL-----GEHEIVEKILAFRAIEKLLSTYV 583

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744
            +LP  I+  T R+H  ++   T+TGRLA  +PNLQNIPI+++ G+ +R+AF  +     
Sbjct: 584 KALPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCDTRQNNY 643

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            +SADYSQIELR LAH+++   L   F +  D+H   A+++F V +E+V+ Q R  AKT+
Sbjct: 644 FLSADYSQIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTV 703

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYG   + L+  L+I  SEA   I  YF R+P +  +I +T N   +N  V+T+ G
Sbjct: 704 NFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFINETINEACENLRVKTLLG 763

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           R    D      +S R  + R A+N  IQGSAA++ + AM+ +  +LE  KL ++MLLQI
Sbjct: 764 RERIIDNWTEFSNS-RAASGRLAVNTRIQGSAAELIKLAMLQLAAALEKRKLRSRMLLQI 822

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+FEVPEEE      ++   ME A +    L VPL VNI +  NW E
Sbjct: 823 HDELIFEVPEEEKEEVQTLVRDIMESAMI----LSVPLVVNILIGKNWAE 868



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 163/322 (50%), Gaps = 23/322 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +F++D S F++RA++A P + +   G    A+ GF   + KL+    KE    H   +FD
Sbjct: 4   VFILDASGFVFRAYFALPDM-KNSSGEGTQAVFGFIRSMNKLI----KEFSPKHMVAVFD 58

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P     R EIY DYK +R K  E L  Q+P+V+      G+  +EI+G EADD+IA+ T
Sbjct: 59  GPNNKQSRREIYADYKIHREKQDENLYQQIPIVKEYCHLLGLRYLEIEGVEADDVIASIT 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDIEHVIKKWGIPPEKMVCLQA 184
             A  EG  V + + DKDL+QLV P    ++  K    ID   V+  +G+PP ++    A
Sbjct: 119 KQAVSEGCEVCLCTADKDLLQLVGPNVVAWNPWKAGPPIDENSVVDIYGVPPSRIADYLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPG+ G G + A  LLQ+Y ++E IL +   +     +  I E  +   LS+
Sbjct: 179 LVGDTSDNIPGVSGCGPQKATALLQKYHSVEGILEHLDELTGSTHK-MISEQKDVLLLSK 237

Query: 245 KLVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            L +L  +VP+         PL  +  E+ N     +F     F  L+  V    + D  
Sbjct: 238 DLAVLDNNVPLPMGISGFAFPLHEVPQEEIN-----TFYMRHGFKTLVQPVEEASNIDIE 292

Query: 298 ---NIEPVVLDINTTENKGIAI 316
              + +P+V  ++T + K +A 
Sbjct: 293 IIHSCQPLVRVLSTLQGKSVAF 314


>gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 932

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 179/534 (33%), Positives = 288/534 (53%), Gaps = 40/534 (7%)

Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K  ++ K  +  LH +G  + G   DI ++ Y+++   +    A + ++ L +   E   
Sbjct: 411 KTVYDAKSLRHALHAHGWELHGAVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDE--- 467

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLW------------LLLRPKLIVEKLLHVY 569
             K S  I KIS+    +  +E + N   Q W             LL+ +  +E+L H  
Sbjct: 468 --KPS-DISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIYAYALLQMQPTLEQLAHFR 524

Query: 570 E-----RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +      L+ P+  ++ +ME TGI ID   L + +  +   +   +++ +D  G + NLS
Sbjct: 525 QVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLS 584

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKST 683
           SPKQL ++LFT+L+ P   KTKTG   T A+ LE++     +P ++ +L  R   K+   
Sbjct: 585 SPKQLQEVLFTQLELPKTKKTKTGY-TTDAKALEELARYNPHPFLEALLYHRDRIKLLQ- 642

Query: 684 YADSLPNHINKRTQ---RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739
               +  ++ +R     R+HT +      TGRL+S++PNLQNIP +T  GQKIR AF+  
Sbjct: 643 ----IVRNLRERVADDGRIHTTFGQTVAATGRLSSIDPNLQNIPARTVDGQKIREAFVPQ 698

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            P   L++ADYSQIE+RI+AH++    L   F +  D+HR VAA ++GV  ++V+P  R 
Sbjct: 699 KPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRS 758

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           H K  ++ + YG+S + LA QL I + +A   +  YF RF  + EY+ +      + GY 
Sbjct: 759 HVKATSYGLAYGLSAYGLAAQLNISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYT 818

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+ GRR +  E+ S   ++ +   RAA+NAPIQGSAAD+ + AM+ V   L   +L ++
Sbjct: 819 ETMRGRRRYLPELRSTNRNVADNARRAALNAPIQGSAADLMKAAMLQVDADLRQEQLQSR 878

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +LLQ+HDELV EV   E      ++  +M         LRVPL+V++ +  NW+
Sbjct: 879 VLLQVHDELVLEVAPGETERLETLVRQAMTGVA----KLRVPLEVSVGIGPNWR 928



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 162/314 (51%), Gaps = 13/314 (4%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAF++  P   R   G+  NA+ GF +ML  +++  +     +H    F
Sbjct: 6   LLVLDGHSLAFRAFFSRDPEHFRTSTGVYTNAVHGFFSMLLTMIRAEKP----THIGAAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR +IYPDYK  R + P   + Q+  ++    A GI  +     EADDI+AT  
Sbjct: 62  DLSRHSFRTDIYPDYKGGRAETPPEFIGQVENIQKMLSAMGIKWLTEPNVEADDILATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYD--TVKEEKIDIEHVIK-KWGIPPEKMVC 181
               K G  V + S D+D  QL+S   T LY   ++ E K      +K ++ + P++   
Sbjct: 122 TKGTKSGMEVLVSSGDRDSFQLISDDVTVLYPGRSISETKRMTPQAVKDRYDVWPQQYPE 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL G+  DN+PG+P +G K AA  + EYG+L+++L +   +K  KR EN+ ++ +   
Sbjct: 182 IAALVGEHADNLPGVPLVGEKVAASWINEYGSLDSLLEHRDELK-GKRGENLRQHIDDVL 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTYDCDAAN 298
            +R+L  LRTD+ + + LE L     +   +      LEF ++   I R+   +   + N
Sbjct: 241 RNRQLNRLRTDLQLPLSLEDLHWTGFDPQAIQEICDELEFKQMRTQILRLGQAFGVTSIN 300

Query: 299 IEPVVLDINTTENK 312
            +   ++++ T+ +
Sbjct: 301 GDSATMELDRTQTE 314


>gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
 gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
          Length = 908

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 172/516 (33%), Positives = 271/516 (52%), Gaps = 15/516 (2%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H  K     L   G+ + G   D  L +Y+    R ++D+  +A   + Y R+E+     
Sbjct: 395 HAAKEASHALAGRGLDLEGVTFDTELAAYLCQPDRRAYDLPDLA---IGYLRRELGGDDG 451

Query: 526 SSI---PID-KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           SS     +D ++  +     A   +  +  L  +L  ++       +   L+ P+  V++
Sbjct: 452 SSAGQGALDLEVDGADEGRRAAVRAAAVRDLVDVLGGEVADRGATTLLSDLELPLQAVLA 511

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++E TGI ID   L  +  E    +     + Y + G + NL SPKQL ++LF +L+ P 
Sbjct: 512 RLERTGIAIDHAYLSGLEREFDGQVQGAAADAYAVIGREVNLGSPKQLQEVLFDQLRMPK 571

Query: 642 GAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             + KTG + T A  L  +     +P ++++L  R   +++ T    L +  +    R+ 
Sbjct: 572 TKRIKTG-YTTDANALTDLFARTGHPFLEHLLAHRDAIRLRQTVEGLLRSVADD--GRIR 628

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759
           T +      TGRL+S +PNLQNIPI+TD G++IRRAF+  P    L++ADYSQIE+RI+A
Sbjct: 629 TTFQQTIAATGRLSSADPNLQNIPIRTDAGRQIRRAFVVGPGYATLLTADYSQIEMRIMA 688

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    L   F +  D+H  V + +FGV  ++V+P MR   K +++ + YG+S + L+ 
Sbjct: 689 HLSGDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSKIKAMSYGLAYGLSSYGLSQ 748

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I  SEAA  +  YF RF G+ +Y+    +  R  GY  T+ GRR +  ++ S     
Sbjct: 749 QLAIEVSEAAALMTDYFERFGGVRDYLTGVVDQARATGYTATVLGRRRYLPDLTSDNRQR 808

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER A+NAPIQGSAAD+ + AM+ V   L    L ++MLLQ+HDELV EV E E   
Sbjct: 809 REAAERMALNAPIQGSAADLIKVAMLGVDGELTRRGLRSRMLLQVHDELVLEVAEGEREE 868

Query: 940 ASQIIVHSMEKA--CLPKINLRVPLKVNIKVSNNWQ 973
             +++   M  A   LP   L VPL V++ V  +W 
Sbjct: 869 VEELVRTQMAAAGSGLPDGPLDVPLDVSVGVGESWH 904



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 155/291 (53%), Gaps = 16/291 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  YRAF+A P+ +     G P NA+ GF +ML  LL++       +H AV 
Sbjct: 15  RLLLIDGHSMAYRAFFALPVENFSTSSGQPTNAVFGFTSMLANLLRDEEP----THVAVA 70

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E    YK NR   PE    Q+ ++R       +  ++  GFEADDI+AT 
Sbjct: 71  FDAGRTTFRTERLESYKGNRSATPEPFRGQVDVIRQLLATMHVQVLDKPGFEADDILATL 130

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMV 180
           T  A ++G  V + S D+D  QLV P  T LY    V E  ++  E V  K+G+PP +  
Sbjct: 131 TAQAGEQGMEVLVCSGDRDTFQLVGPQVTVLYPVRGVSEMSRMTPEAVEAKYGLPPARYP 190

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYA 237
            L AL G++ DN+PG+PG+G KTAA  + +Y  L  +L NA RI  K     R N+ + A
Sbjct: 191 DLAALVGETSDNLPGVPGVGPKTAAKWITQYDGLAGVLENAERITGKAGESLRANLAQVA 250

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
               L+R+L  LRTD+ + +  E L +   +   L   L  LEF  L +R+
Sbjct: 251 ----LNRELNELRTDLDLPLGPEDLAVRPWDRAALHQMLDELEFRTLRDRL 297


>gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 911

 Score =  271 bits (692), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 193/627 (30%), Positives = 330/627 (52%), Gaps = 54/627 (8%)

Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTSFKVETIFID 430
           ++ K I  W +  E   S ++  +    + +H  K I I IS               ++D
Sbjct: 309 LDVKIINSWSKDYE--DSINYLYVESLEEDYHKDKIIGIGISN---------NKGNFYLD 357

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--HRYGISMRGFE- 487
                 Q S  ++T      S  ++F  N +  K  ++IK    +L  H+Y +    F+ 
Sbjct: 358 FKNKAQQLSFFEDTTLSSTNSLFEEFLNNPNLKKYTYDIKKTTYLLKNHKYNVLASNFDF 417

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA----- 542
           D M+  Y L++   S D++S         + +++ +      ID+I    V+++      
Sbjct: 418 DFMVACYSLNANVVS-DLSS---------QIKLVDNLVELETIDEIFGKGVKKNPDIDLD 467

Query: 543 IENSNVILQLWLLLR-PKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           I++  +  + +LL +    ++E+L       +Y ++D P+I+V+  +E+ GI ID++ LK
Sbjct: 468 IKSKYISKKAYLLKKYSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLK 527

Query: 597 QVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             + +I K +  +E  +  L  E+    FN SSPKQ+ ++LF KLK P+  K       T
Sbjct: 528 LQTQQILKKINHIEGQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLPNLEKG------T 581

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T++++ +     +PII  +LE R+ +K+ +TY       I     +VHT ++   T TGR
Sbjct: 582 TSKEVLEKLITYHPIINLLLEHRKYTKLYTTYLKGFEKFI-FDDNKVHTIFNHTLTNTGR 640

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PN+QNI I+ +  +++R+ FI+   K  +S DYSQIELR+LA ++K T L   F 
Sbjct: 641 LSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFN 700

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
            + DIH   A  IF ++ ++++ + RR AK  NF I+YG++ F LA+ L I  ++A   I
Sbjct: 701 QNADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDLNISVNQAKQMI 760

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           K Y+  FP + ++ EK        GY+ T+  RR + +E+NS   +IR   +R A+N PI
Sbjct: 761 KDYYSAFPSLLDFKEKQVEIATSQGYITTLSNRRRYINELNSTNHNIRQFGKRIAVNTPI 820

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA- 951
           QG+A+DI + AMIS++K L++  L  +++ QIHDE++ EV + ++    +I+VH +E A 
Sbjct: 821 QGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQTKKIVVHELENAL 880

Query: 952 --CLPKINLR----VPLKVNIKVSNNW 972
                 +NL+    V LKV   V   W
Sbjct: 881 EKLFLDLNLKEQVVVKLKVGESVGKTW 907



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 152/302 (50%), Gaps = 21/302 (6%)

Query: 7   LFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +VDG+S I+RAFYAT       L +   G+  NA   F NML  ++    +     H 
Sbjct: 5   ILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAAYSFINMLLSVIH---QRGPYDHI 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR+++  DYKANR K P  L+ Q  +VR       I   E +  EADDI+
Sbjct: 62  LIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEADDIV 121

Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVS-PTTCL--YDTVKE-EKIDIEHVIKKWGIP 175
            +    AEK+       I+S+DKD+ QL++    CL     V E E++D   + +KW I 
Sbjct: 122 GSICKYAEKQFDNLQAEILSSDKDMYQLITNKVICLNPIQGVNELEEVDTNKLFEKWQIL 181

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P ++   +A+ GDS DN+ G+ GIG K A  L+Q+Y NLENI  N  +IK   + + + +
Sbjct: 182 PNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYQNLENIYNNLEQIKGAIKTK-LEQ 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYD 293
             + A L + L  ++TDV     LE+   +  D N   +  FL   E   L  R     +
Sbjct: 241 DKKMAFLCKDLATIKTDV----TLENFSFKKLDFNVDNIYEFLNKYEMYSLKKRFTNILN 296

Query: 294 CD 295
            D
Sbjct: 297 LD 298


>gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
 gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
          Length = 898

 Score =  270 bits (690), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 170/549 (30%), Positives = 281/549 (51%), Gaps = 36/549 (6%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503
           +++E  +       + +  KIGH++K         G ++ G   D  + +Y+L   + ++
Sbjct: 364 ISEEDSAAFSALLSDPNVGKIGHSMKVQIHAWLGEGYTLAGIVGDTEIDAYLLHPDQRTY 423

Query: 504 DIASIAQKWLSY----TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           D   + Q++L+       ++ L        +D ++   V  H + ++             
Sbjct: 424 DFTDLVQRYLAIDLGGGAQDTLGIGLDGEIVDDLAARAVATHDLRDA---------FARA 474

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L  E+       ++  + DV+++ME  GI +D D L ++ A+    +       ++  G+
Sbjct: 475 LETEEQSDALREMELRVCDVLARMEQRGIAVDADQLARLHADFDARVNQAATQAWEAIGD 534

Query: 620 K-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN------------CGDNP 666
              NLSSPKQL  +LF +L  P   KTK+G + T A  LEQ+              G N 
Sbjct: 535 SSVNLSSPKQLQAVLFDQLGLPKTKKTKSG-YTTNADALEQLLVKISMREDDQALAGQN- 592

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            +  +L  R   K++ +  + L   +    QR+ T Y      TGRL+S +PNLQNI  +
Sbjct: 593 FLTGLLAHRDAIKLRQS-VEGLQRSLGD-DQRIRTTYQQTVAATGRLSSTDPNLQNIHAR 650

Query: 727 TDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           T+ GQKIR  F+       L++ADYSQIE+R++AH++    L   F    D+H  VA+ +
Sbjct: 651 TEEGQKIREVFVPGDGYDYLMTADYSQIEMRLMAHLSGDAELIVAFNAGADLHNYVASRV 710

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FGV   +V+P  R   K +++ ++YG+S F L+ QL+IP  EA + +  YF RF  + EY
Sbjct: 711 FGVAESEVTPAQRSKIKAMSYGLVYGLSAFGLSAQLKIPVPEAQNLMDGYFSRFGRVKEY 770

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++      R++G+ +T+ GRR +  E++S    +R   ER A+NAPIQGSAADI + AM+
Sbjct: 771 LDGLVAQARKDGFTQTLLGRRRYLPELSSTNRQVRESAERMALNAPIQGSAADIIKIAML 830

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +V + L   +L++++LLQ+HDELV EV   E      I+   M  A      L VPL V 
Sbjct: 831 NVERELAAAQLSSRVLLQVHDELVLEVAASEAEQVEAIVREQMGNAW----ELSVPLSVG 886

Query: 966 IKVSNNWQE 974
           + +  NW++
Sbjct: 887 VGIGRNWRD 895



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/292 (36%), Positives = 152/292 (52%), Gaps = 15/292 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           E  + L+DG S  +R+F+A P  S R   G   NA+ GF N L +L+ + +     +H A
Sbjct: 3   EKTMLLLDGHSMAFRSFFALPADSFRTAQGQYTNAVHGFINTLLRLINDYKP----THIA 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD P  TFR   Y +YK  R K PE    Q+ +++      GI  + +  +EADDI+A
Sbjct: 59  VAFDLPGGTFRTREYGEYKGGRAKTPEEFKGQIGVIQEVLNVMGISWLTVDDYEADDIVA 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEK--IDIEHVIKKWGIPPEKM 179
           T +   E EG  V I S DKD  QLVS  T+ +Y   + +   ++   V ++ G+ P++ 
Sbjct: 119 TLSARGEAEGMNVFIASGDKDSYQLVSDLTSVVYPMPRSQMLLLNPAGVEERTGVRPDQY 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236
             L AL G+  DN+PG+PG+G KTAA  L +YG L  +L +A  IK K     R+NI   
Sbjct: 179 SDLAALVGEKADNLPGVPGVGPKTAAKWLNQYGGLGQLLDHAEEIKGKAGQSLRDNI--- 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            E  RL+R L  L  D+ I   L+ L+        L      L+FT L  RV
Sbjct: 236 -EQVRLNRVLNKLVRDLDIVPNLDQLVPMGVERQALHELFDTLDFTTLRTRV 286


>gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 909

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 165/513 (32%), Positives = 277/513 (53%), Gaps = 13/513 (2%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G  + G   D  L +Y++  GR S  + +++   + Y  +E+  
Sbjct: 403 KVMHNAKDALRVFPEHGWEIAGVTMDTALAAYLVKPGRRSFALDALS---IEYLHRELAP 459

Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +      +   +D Q +  A+   +  +L L   L  KL     + +   ++ P   +++
Sbjct: 460 AAADG-QLAFGTDEQAEADALMSQARAVLDLGEALGGKLEEVGAVELLHDVELPTSLLLA 518

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI  D+  L+ +  + +  +    +  +   G +FNL SPKQL ++ F +L  P 
Sbjct: 519 RMERHGIAADRAHLEAMEQQFAGAVQQAVKEAHAAVGHEFNLGSPKQLQEVFFGELNLPK 578

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             KTKTG               ++ +   +L  R+ ++++ST  + L   I     R+HT
Sbjct: 579 TKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQARLRSTV-EGLIKTIAA-DGRIHT 636

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760
            +S     TGRL+S +PNLQN+P++TD G+ IRR F+     + L++ADYSQIELR++AH
Sbjct: 637 TFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAH 696

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L + F +  D+H  VA+++F V    V  +MRR  K +++ + YG+S F L+ Q
Sbjct: 697 LSEDLGLIEAFTSGEDLHTTVASQVFSVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 756

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I  +EA   +  YF RF G+ +Y+ +  +  R  GY  T+ GRR +  ++NS     R
Sbjct: 757 LGIEPAEARVLMDTYFERFGGVRDYLRRVVDEARATGYTATMLGRRRYLPDLNSDNRQRR 816

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI + AM++V ++L D KL++++LLQ+HDE+V EV   E    
Sbjct: 817 ESAERMALNAPIQGTAADIVKVAMLNVDRALTDAKLSSRLLLQVHDEIVLEVAPGEREQV 876

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             ++ H M  A    ++LR PL V++    +W+
Sbjct: 877 ETLVRHEMSSA----VSLRAPLDVSVGAGPDWE 905



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 148/279 (53%), Gaps = 10/279 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G   NAI GF +ML     N+ ++   +HFAV F
Sbjct: 23  LLLMDGHSLAYRAFFALPAENFTTASGQTTNAIYGFASML----ANTLRDEAPTHFAVAF 78

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+  +P+YKANR K P+    Q+ L+             I GFEADD+IAT  
Sbjct: 79  DVSRKTWRSADFPEYKANRSKTPDEFKGQVELIGELLDTMNAERFAIDGFEADDVIATLA 138

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QLVS  TT LY T  V E  +     V +K+G+ P++   
Sbjct: 139 TQAEAAGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPAKVEEKYGLTPQQYPD 198

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA   + ++G+   ++ +A  +K K   + + ++ E  +
Sbjct: 199 FAALRGDPSDNLPGIPGVGEKTATKWINQFGSFAALVEHADEVKGKV-GQALRDHLEAVK 257

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           L+R L  L  DV +   +  L     +   L  FL+ LE
Sbjct: 258 LNRHLTELVRDVELPKAVTDLERAPYDRTALKGFLEVLE 296


>gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
 gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
          Length = 844

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 140/404 (34%), Positives = 234/404 (57%), Gaps = 9/404 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           LD P+  V+++ME  GI +D+  L  +   +      LE  +   +GE+ NL SPKQ+  
Sbjct: 442 LDLPLAPVLARMESRGIGVDEGALASLDVRLEGRSRELEALVRAEAGEEVNLQSPKQMAA 501

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQLSKIKSTYADSL 688
           +LF +L  P   KTKTG + T    LE++    +P   + +++LE R+++K+++ +    
Sbjct: 502 LLFERLGLPPLKKTKTG-FSTDVGVLEELAKLPDPLSRVPRHLLEHREVAKLRTGFVQPF 560

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
               ++    +++ +   +T TGRL+S +PN+QN+P+  +  +  RR  + + P  + +S
Sbjct: 561 LKQAHRDGGHIYSTFEQTATGTGRLSSRDPNVQNLPVFGEWAEAFRRCLVPTSPKDRFLS 620

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAH+     L Q FE   DIHR  A+ ++GV  E+VS + RR AK +NF 
Sbjct: 621 ADYSQIELRVLAHLCGEPRLVQAFEAGRDIHRETASWVYGVAAEEVSAEQRRFAKVVNFG 680

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+S   LA ++ + R EAA  I RYF   P + EY+E+T    +  GY  ++FGR  
Sbjct: 681 LLYGMSAHGLAQRMGVGRPEAAQIIDRYFSVLPRVREYLEETVREAKARGYTVSLFGRVR 740

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
              E+++ +       +R A+N+PIQ +AADI + AM+ + + L    L  +++LQ+HD 
Sbjct: 741 PLGEVSTVEGRGGGALDRVAVNSPIQSTAADIAKVAMVDLERRLRGSGLPVRLVLQVHDS 800

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           LV +VP+E +  A+ ++   ME+A    + L VPL+   K  ++
Sbjct: 801 LVCQVPQEALEEAASLLRDVMERA----VTLSVPLETVTKAGSS 840



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/293 (36%), Positives = 152/293 (51%), Gaps = 19/293 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E    LVDG    +RAFYA P LS   DG PV+AI GF NML K+L+  R +     + +
Sbjct: 3   EPRFLLVDGHGLAFRAFYALPELS-APDGTPVHAILGFLNMLQKVLEEQRPQG----WGL 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    T R +IY DYK  R   PE    QLPL+    +A G      +G EADD+IA+
Sbjct: 58  FFDPKGETERKKIYGDYKLGRRPTPEGFKIQLPLLLELLEALGHRVHVREGVEADDLIAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKK-WGIPPEKM 179
            T ++  +G    ++S DKDL+Q++SP   +      V E ++  E + ++ +G  P  M
Sbjct: 118 -TALSLGKGREALVLSADKDLLQVLSPGVRVMRPQKGVSEFRLFDEALFREEYGFAPSAM 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               ALTGD++D+IPG+ GIG K A  L+  +G+LE I  +   +  K +R  + E  E 
Sbjct: 177 ADYLALTGDAVDHIPGVAGIGDKGARALVSHHGSLEGIYAHLGELP-KGQRGKLEEGREQ 235

Query: 240 ARLSRKLVMLRTDVPI---TIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           A  SR LV     VP+    IP E LI    +  R  +    L   +L+ R+ 
Sbjct: 236 AFASRALV-----VPLPTEAIPAEGLIPAPRDDERARTLCSRLGLKQLLKRLG 283


>gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304]
 gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304]
          Length = 976

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 145/432 (33%), Positives = 251/432 (58%), Gaps = 12/432 (2%)

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           IL L  L  P L   + + + + ++ P+  V+++ME+TG  +D   L+ +    +     
Sbjct: 546 ILALHQLFYPVLEKRQEISLLKDIELPVSTVLARMELTGAGVDYSRLRNMYDSFAAQAAQ 605

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NC 662
            E   +D +G++ NL SPKQL  +LF  +      KTK+G   T A  L+++      N 
Sbjct: 606 AEHIAWDQAGKQINLQSPKQLQAVLFDDMGLEPTRKTKSGGRTTNAAALQELYIRSVHNE 665

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
             N  +  +L  R+++K+K     +L + +N    R+HT +      TGRL+S +PNLQN
Sbjct: 666 RANTFLGALLRHREVNKLKQI-VQTLMDSVNTSDGRIHTTFEQTVAATGRLSSTDPNLQN 724

Query: 723 IPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           IP +   G++IR AF+ S     L+S+DYSQ+ELR++AH++    L + F +  D H+ V
Sbjct: 725 IPNRNVEGREIRAAFVPSDGYLSLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYV 784

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+ ++ V +++++P  R H K +++ + YG+S + LA QL I  +++     +YF  F  
Sbjct: 785 ASLVYQVPLDQITPDQRSHIKAMSYGLAYGLSTYGLAQQLGISPAQSDQLKAKYFSTFGK 844

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +H+Y+E   +  ++ GY  T+FGRR ++ ++ S +  +R+  +RAA+NAPIQGSAADI +
Sbjct: 845 VHDYLESLVSQAKKRGYTTTMFGRRRYFPDLLSSRRQLRDAAQRAALNAPIQGSAADIMK 904

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AM     SL++  + ++++LQIHDELV E+   E    + ++ ++ME+A    + L VP
Sbjct: 905 IAMNKAATSLDEAGVKSRIILQIHDELVVELASGEEEEVTALVKNAMEEA----VELAVP 960

Query: 962 LKVNIKVSNNWQ 973
           L V+  + ++WQ
Sbjct: 961 LDVSTGIGSDWQ 972



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 156/285 (54%), Gaps = 20/285 (7%)

Query: 9   LVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
           +VDG S  +RA++A P  S    DG   NA+ GF  ML ++L++ +     SH A+ FD 
Sbjct: 1   MVDGHSLAFRAYFALPADSFSTSDGQVTNAVYGFTTMLAQVLRDEKP----SHVAIAFDV 56

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              TFRN + P YK  R   PE LL QLPL++    A  I  +E +GFE DDIIAT   +
Sbjct: 57  KGGTFRNRMLPQYKGTRDAAPEDLLSQLPLIQQVLSALDISFVEKEGFEGDDIIATLATM 116

Query: 128 AEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181
            EK G+   ++S D+D  QLV  + T LY        D++H     V  K+ + P +   
Sbjct: 117 GEKAGYETFVLSGDRDAFQLVDQSITVLYP--GHHFKDLKHMTPQAVFDKYKVWPNQYPD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAE 238
           L A+ G+  DNIPG+PG+G   AA  + E+G+L+ I+ +A +I  KK    R+N+    +
Sbjct: 175 LAAMRGEQADNIPGVPGVGDGYAAKWINEFGSLQEIIDHADQISGKKGQALRDNV----D 230

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
             RL+R++  L  DV + + L+  IL + N  ++     +L+F K
Sbjct: 231 QVRLNRRVNALVRDVDLPVSLDDFILHEPNIEKVNEVFSSLQFGK 275


>gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 911

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 191/627 (30%), Positives = 330/627 (52%), Gaps = 54/627 (8%)

Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTSFKVETIFID 430
           ++ K I  W +  E   S ++  +    + +H  K I I IS               ++D
Sbjct: 309 LDVKIINSWSKDYE--DSINYLYVESLEEDYHKDKIIGIGISN---------NKGNFYLD 357

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--HRYGISMRGFE- 487
                 Q S  ++T      S  ++F  N +  K  ++IK    +L  H+Y +    F+ 
Sbjct: 358 FKNKAQQLSFFEDTTLSSTDSLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDF 417

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----A 542
           D M+  Y L++   S D+++         + +++ +      ID+I    V+++      
Sbjct: 418 DFMVACYSLNANVVS-DLSN---------QIKLVDNLIELETIDQIFGKGVKKNPDIDLD 467

Query: 543 IENSNVILQLWLLLR-PKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           I++  +  + +LL +    ++E+L       +Y ++D P+I+V+  +E+ GI ID++ LK
Sbjct: 468 IKSKYISKKAYLLKKYSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLK 527

Query: 597 QVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             + +I K +  +E  +  L  E+    FN SSPKQ+ ++LF KLK P+  K       T
Sbjct: 528 LQTQQILKKINHIEGQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLPNLEKG------T 581

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T++++ +     +PII  +LE R+ +K+ +TY       I   + +VHT ++   T TGR
Sbjct: 582 TSKEVLEKLITYHPIINLLLEHRKYTKLYTTYLKGFEKFIFDDS-KVHTIFNHTLTNTGR 640

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PN+QNI I+ +  +++R+ FI+   K  +S DYSQIELR+LA ++K T L   F 
Sbjct: 641 LSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFN 700

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
            + DIH   A  IF ++ ++++ + RR AK  NF I+YG++ F LA+ L I  ++A   I
Sbjct: 701 QNADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDLNISVNQAKQMI 760

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           K Y+  FP + E+ EK        GY+ T+  RR + +E+NS   +IR   +R A+N PI
Sbjct: 761 KDYYSAFPSLLEFKEKQVEIATSQGYITTLSNRRRYINELNSTNHNIRQFGKRIAVNTPI 820

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA- 951
           QG+A+DI + AMIS++K L++  L  +++ QIHDE++ EV + ++    +I+V  +E A 
Sbjct: 821 QGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQTKRIVVSELENAL 880

Query: 952 --CLPKINLR----VPLKVNIKVSNNW 972
                 +N++    V LKV   V   W
Sbjct: 881 EKLFLDLNIKEQVVVKLKVGESVGKTW 907



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 153/302 (50%), Gaps = 21/302 (6%)

Query: 7   LFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +VDG+S I+RAFYAT       L +   G+  NA+  F NML  ++    +     H 
Sbjct: 5   ILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIH---QRGPYDHI 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR+++  DYKANR K P  L+ Q  +VR       I   E +  EADDI+
Sbjct: 62  LIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSVVREFLTKANIQWFEQENIEADDIV 121

Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVS-PTTCL--YDTVKE-EKIDIEHVIKKWGIP 175
            +    AEK+       I+S+DKD+ QL++    CL     V E E++D   + +KW I 
Sbjct: 122 GSICKYAEKQFDNLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEVDTNKLFEKWQIL 181

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P ++   +A+ GDS DN+ G+ GIG K A  L+Q+Y NLENI  N  +IK   + + + +
Sbjct: 182 PNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYQNLENIYNNLEQIKGAIKTK-LEQ 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYD 293
             + A L + L  ++TDV     LE+   +  D N   +  FL   E   L  R     +
Sbjct: 241 DKKMAFLCKDLATIKTDV----ILENFSFKKLDFNVDNIYEFLNKYEMYSLKKRFTNILN 296

Query: 294 CD 295
            D
Sbjct: 297 LD 298


>gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 477

 Score =  267 bits (682), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 158/485 (32%), Positives = 267/485 (55%), Gaps = 26/485 (5%)

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR 557
           GR S ++ +++ ++L         +    +     +D Q ++ A+   +  +L L    R
Sbjct: 5   GRRSFELDALSVEYLGRELSPAAAADSGQLAFG--ADEQAEQDALMIKARTVLDLGEAFR 62

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            +L       +   ++ P  ++++++E +GI  D+D L ++  + +  +    +  +   
Sbjct: 63  GRLEEVGAAGLLSDVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHAAV 122

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ--------WKTTAQDLEQINCGDNPIIK 669
           G +FNL SPKQL ++LF +L  P   KTKTG         W     D E       P+I 
Sbjct: 123 GHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHEL------PVI- 175

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            +L  R+ ++++ST  + L   I+    R+HT ++     TGRL+S +PNLQNIP++TD 
Sbjct: 176 -MLRHREQARLRSTV-EGLIKTISP-GGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDE 232

Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  D+H  VA+++FGV
Sbjct: 233 GRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTTVASQVFGV 292

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
              +V P+MRR  K +++ + YG+S F L+ QL I   EA   +  +F RF G+ +Y+++
Sbjct: 293 AKSEVDPEMRRKIKAMSYGLAYGLSAFGLSGQLGIGADEARRLMDTFFERFGGVRDYLQR 352

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
                R  GY ET+ GRR +  ++ S     R + ER A+NAPIQG+AADI + AM+ V 
Sbjct: 353 VVEEARAIGYTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVD 412

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            +L   +L+++MLLQ+HDE+V E+   E     +++   M  A      LR PL V++ V
Sbjct: 413 AALTAGELSSRMLLQVHDEIVLEIAPGERERVEELVRREMAGA----FQLRAPLDVSVGV 468

Query: 969 SNNWQ 973
             +W+
Sbjct: 469 GADWE 473


>gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1]
 gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1]
          Length = 895

 Score =  266 bits (681), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 192/548 (35%), Positives = 290/548 (52%), Gaps = 42/548 (7%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGI--SMRGFE-DIMLMSYVLDSGRSS--HDIAS 507
           L++FF N++F K  ++IK    +L    I  S   F  D M+ SYVL+   +S   ++A+
Sbjct: 362 LEQFFLNDNFKKNTYDIKKTVTLLRNNNIKFSFSSFTYDAMIASYVLNPNVTSRIQNLAN 421

Query: 508 IAQKWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           I +  L     E+   K  K +  ID  S ++          ++ +L LL      +  L
Sbjct: 422 IVETELFVEEDELFYGKGVKQNKEIDTASKAKF---------IVGKLELLYSTHKPIINL 472

Query: 566 L------HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN----IYD 615
           L      ++YE+++ P+++V+  ME  GI ID+  L + +A     +  LEE     + D
Sbjct: 473 LKENNQFNLYEKIELPLVEVLFNMEQKGILIDKVELDKQTARTLFLIEELEEKMKVILKD 532

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
              E FN  SPKQ+ ++LF ++  PS  K  T +     + LE+I    +P+I  +LE R
Sbjct: 533 QISENFNFGSPKQIKELLFDQIGLPSNKKQSTDK-----EALEKI-IHLHPVINLLLEHR 586

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           +L+K+ STY       I     +VHT ++   T TGRL+S EPN+QNI +K +L ++ R+
Sbjct: 587 KLNKLYSTYLRGFEKFI-FDDNKVHTIFNQTLTNTGRLSSSEPNIQNISVKDELQREARK 645

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVS 794
            FIS    K  S DYSQIELR+LA + +   L  +F+N  D+H   A +IF +   E+++
Sbjct: 646 IFISNNDTKFFSFDYSQIELRVLAQLGQEDTLLNIFKNDRDVHAEAARKIFKLEENEEIT 705

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              RR AK  NF IIYG+S F L+  L+I   EA  +I  Y+  FP +  Y     N   
Sbjct: 706 SDQRRIAKVFNFGIIYGLSDFGLSNDLKISIPEAKRFIDDYYLSFPKLMTYKNSLINQAT 765

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
            NGY ET   RR   +E+ S    ++N   R A+N PIQG+AADI + AM ++HK   ++
Sbjct: 766 VNGYAETYANRRRIVNELASSNFMVKNFGNRIAVNMPIQGTAADILKVAMNNIHKEFREN 825

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC--LPKI------NLRVPLKVNI 966
            L + M  QIHDE++FE+ E E + A +I+   M+ A   L KI       + V L+VN 
Sbjct: 826 NLKSFMTAQIHDEIIFEIFESEESLAVKIVEECMQNAFIDLSKIVQKEEQPIEVKLEVNK 885

Query: 967 KVSNNWQE 974
              NNW E
Sbjct: 886 SKGNNWFE 893



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 160/296 (54%), Gaps = 22/296 (7%)

Query: 7   LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           + LVDG+S ++RA+YA+    P+L +   G+P NAI  F NML  L+ +     +     
Sbjct: 4   ILLVDGNSLLFRAYYASAYAGPVL-KTTTGIPTNAIFSFANMLTSLISDRNYYDVK---- 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR++   +YKA R   PE L+PQ  +VR    +  I   E + +EADD+I 
Sbjct: 59  VAFDKSKKTFRHDKLENYKAGRSATPEDLIPQFQIVREFLDSSNISWWEKENYEADDLIG 118

Query: 123 TYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPP 176
           T + I E     F V I+++DKD+ QL+S  T +      T   E      +++KW + P
Sbjct: 119 TMSKIIENNFSEFEVEILTSDKDMFQLISDKTKILLPKTGTSNLELFGEAELLEKWEVAP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + +V L+ L GD  DN+ G+ G+G KTA  LL+E+  +E I  N   I   K +E ++  
Sbjct: 179 KNVVDLKGLMGDPSDNLKGVEGVGEKTAIKLLKEFQTIEGIYENIDSI-SGKLQEKLING 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVAT 290
            ++A L +++  +  +V I    E+L+ E  + N   LI+FL+  E   L+ R++T
Sbjct: 238 KDSAILCKEIATINCEVEI----ENLVFEPINLNLNGLINFLEKYEMNSLVKRLST 289


>gi|309808033|ref|ZP_07701952.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
 gi|308168716|gb|EFO70815.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
          Length = 302

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/307 (45%), Positives = 202/307 (65%), Gaps = 11/307 (3%)

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           +++RQ+SKI+STY + L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G+
Sbjct: 1   MDYRQISKIQSTYINGLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGK 59

Query: 732 KIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           +IR+AF+  P K+   L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+
Sbjct: 60  QIRKAFV--PCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGL 117

Query: 789 -NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++
Sbjct: 118 SNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMK 177

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                 R+ GY ETI  RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +
Sbjct: 178 AAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKM 237

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
              LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A      L VPL  +  
Sbjct: 238 QSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPKIMQQAA----QLDVPLIADAN 293

Query: 968 VSNNWQE 974
             +NW E
Sbjct: 294 WGHNWYE 300


>gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018]
 gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
 gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
          Length = 1033

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 235/407 (57%), Gaps = 14/407 (3%)

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P+  V+  ME  G  +D   L  +    +      ++   D++ +  NL SPKQL  +LF
Sbjct: 629  PVSRVLRGMEDAGAAVDMSRLVSMRDNFAAEAQFAQKMALDVANKPINLQSPKQLQQLLF 688

Query: 635  TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSL 688
              +      +TK+G + T A+ L+++    +P       +  +L+ R+ +K+K     SL
Sbjct: 689  EDMGLKPTRRTKSGSYTTNAEALQELYAKIDPDEKASQFLGALLKHRETNKLKQI-VQSL 747

Query: 689  PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK--KLI 746
             +       R+HT +      TGRL+S +PNLQNIP +  +G++IR AFI P  +  +L+
Sbjct: 748  IDSARYEDGRIHTTFEQTIAATGRLSSSDPNLQNIPNRNVVGREIRAAFI-PGNQYDQLM 806

Query: 747  SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            S DYSQ+ELRI+AH +    L + F++ +D H+ VA+ ++ + +E+VSP  R H K +++
Sbjct: 807  SCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVASLVYKIPVEQVSPDQRSHVKAMSY 866

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
             + YG+S + LA QL I  + A    ++YF  F G+H+Y+E   +  R+ GY +T+FGRR
Sbjct: 867  GLAYGLSTYGLAKQLSISPAAAEVLKEKYFDTFGGVHDYLESLVDKARKLGYTQTMFGRR 926

Query: 867  IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
             ++ ++NS   + R   ERAA+NAPIQGSAADI + AMI V K L + K+ ++++LQIHD
Sbjct: 927  RYFPKLNSTNRASRESAERAALNAPIQGSAADIMKLAMIQVDKDLREAKVKSRVILQIHD 986

Query: 927  ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            ELV E+   E      I+ ++ME      + L VPL V+  +  +WQ
Sbjct: 987  ELVLEIAHGEADIVENIVKNAMEHT----VELDVPLNVSTGLGADWQ 1029



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 152/284 (53%), Gaps = 18/284 (6%)

Query: 7   LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L +VDG S  +RAFYA      S K  G   NAI GF  ML ++++  + + +A    V 
Sbjct: 21  LLVVDGHSLAFRAFYAISADNFSTKS-GFATNAIWGFSTMLSQVIEKEKPDKLA----VA 75

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN++ P YK  R   PE LL QLP+++    A G+  I  QG+E DDIIAT 
Sbjct: 76  FDVKGGTFRNKLLPQYKGTREAAPEELLAQLPVIQELLNALGVKYITKQGYEGDDIIATL 135

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
             +  K  +   ++S D+D  QL+        P     D    +++D + +I+K+ + P+
Sbjct: 136 ATMGAKAKYKTLVLSGDRDAFQLIDEYINVLYPGRHFKDL---KQMDTDAIIEKYNVTPK 192

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +   L AL G++ DNIPG+PG+G   AA  + ++G LE I+ +A ++  KK  E++ E  
Sbjct: 193 QYSDLAALRGETSDNIPGVPGVGDGYAAKWINQFGGLEGIIEHADQVTGKK-GESLRESI 251

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           +  RL++K+  L  D+ + + +  L   + +   +    + LEF
Sbjct: 252 DQIRLNKKVNTLVKDLDLGVGINDLEFGNVDAASVGELFERLEF 295


>gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309]
 gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309]
          Length = 908

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 175/518 (33%), Positives = 272/518 (52%), Gaps = 18/518 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H+ K  +  L   G ++ G E D ML +Y+    + SH +  +  + L    +E     +
Sbjct: 394 HDAKGARHALSSRGWTLGGVEFDTMLAAYLAHPDQRSHKLEDVLSRVLGVVIEEGEGDSE 453

Query: 526 SSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           +   +  +    S  Q  A + +  +  L   LR +L       +   ++ P+  ++ QM
Sbjct: 454 ALFDLGDMGAGPSAAQVRAGKLAAYLHPLASTLRSRLEESSEAALLTDMEMPLSVLLGQM 513

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  GI  D  +L  +S E+ K + +  E  +  +G + NLSSPKQL ++LF     P   
Sbjct: 514 EDIGIAADTSVLNGLSDELGKAVDAAREGAWAAAGREVNLSSPKQLQELLFDHFGLPKTK 573

Query: 644 KTKTGQWKTT-------AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           KTKTG            A+  ++   G +  +  +L  R   K+K    DSL   +    
Sbjct: 574 KTKTGYTTNADALADLHAKTSDEGGAGHD-FLGFLLTHRDRIKLKQ-MVDSLSATVAS-D 630

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIEL 755
            R+HT +S  +  TGRLAS +PNLQNIP ++  G +IR AF++    + L+SADYSQIE+
Sbjct: 631 GRIHTTFSQVAAATGRLASSDPNLQNIPARSADGMRIRGAFVAGEGFESLMSADYSQIEM 690

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R++AH++    L + F +  D+HR +A+ +FG  + +VS + R   K  ++ + YG+S +
Sbjct: 691 RLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYGLSSY 750

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA QL IP  EAA    RYF RF  + +Y+E      R +GY +T+FGRR +  ++ S 
Sbjct: 751 GLAAQLGIPVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMFGRRRYLPDLRSS 810

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
               R + ERAA+NAPIQGSAADI + AMI+V  +L +  L +++L+QIHDEL+ EV   
Sbjct: 811 NRQRREMAERAALNAPIQGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVEVAPG 870

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           E      I+   M       + L VPL V + V  +WQ
Sbjct: 871 EAAAVEAIVRDRMAT----PVELSVPLDVAVGVGRSWQ 904



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 153/287 (53%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           + ++DG S  +RAFYA P  S     G   NA+ GF +ML +LL+  +     +H AV F
Sbjct: 12  VLIIDGHSMAFRAFYALPPDSFVTATGQHTNAVYGFVSMLTRLLETEQP----THVAVAF 67

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR E YP+YK  R   PE    Q+ L+R    A GI ++  +GFEADDI+AT  
Sbjct: 68  DVSRHSFRTEEYPEYKGTRDATPEEFKGQVELIREVLDAMGIVSLSREGFEADDILATLA 127

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVC 181
           Y A  +G  V ++S D+D  Q V+   T LY         ++  + V +K+G+PP +   
Sbjct: 128 YRAGNDGATVLVVSGDRDSFQTVTDNVTVLYPGTGPGDLRRMTPQAVEEKYGVPPHRYPE 187

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + A+ G++ DN+PG+PG+G KTAA  + +Y  L+N+L  A  I   KR   + E+ +   
Sbjct: 188 IAAIVGETSDNLPGVPGVGPKTAAQWINKYDGLDNLLARADEIG-GKRGAALREHMDDVV 246

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +R+L  L TD+ + +    L     +   +     +LEF +L  +V
Sbjct: 247 RNRRLNRLLTDMDLEVSPSDLARRPTDVAAIDRLFDSLEFGRLRQKV 293


>gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
          Length = 889

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 176/518 (33%), Positives = 275/518 (53%), Gaps = 18/518 (3%)

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H+ K  +  L   G ++ G E D ML +Y+    + SH +  +  + L    +E     +
Sbjct: 375 HDAKGARHALSSRGWTLGGVEFDTMLAAYLAHPDQRSHKLEDVLSRVLGVVIEEEEGDSE 434

Query: 526 SSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           +   +  +    S  Q  A + +  +  L   LR +L       +   ++ P+  ++ QM
Sbjct: 435 ALFDLGDMGAGPSAAQVRAGKLAAHLHPLASTLRSRLEESSEAALLTDMEMPLSVLLGQM 494

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  GI  D  +L  +S E+ K + +  E  +  +G + NLSSPKQL ++LF     P   
Sbjct: 495 EDIGIAADTSVLDGLSDELGKAVDAAREGAWAAAGREVNLSSPKQLQELLFDHFGLPKTK 554

Query: 644 KTKTGQWKTTAQDLEQINC-------GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           KTKT  + T A+ L  ++          +  +  +L  R   K+K    DSL   +    
Sbjct: 555 KTKT-GYTTNAEALADLHAKTSDEGGAGHDFLGFLLTHRDRIKLKQ-MVDSLSATVAS-D 611

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIEL 755
            R+HT +S  +  TGRLAS +PNLQNIP ++  G +IR AF++    + L+SADYSQIE+
Sbjct: 612 GRIHTTFSQVAAATGRLASSDPNLQNIPARSADGMRIRGAFVAGEGFESLMSADYSQIEM 671

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R++AH++    L + F +  D+HR +A+ +FG  + +VS + R   K  ++ + YG+S +
Sbjct: 672 RLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYGLSSY 731

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            LA QL IP  EAA    RYF RF  + +Y+E      R +GY +T+FGRR +  ++ S 
Sbjct: 732 GLAAQLGIPVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMFGRRRYLPDLRSS 791

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
               R + ERAA+NAPIQGSAADI + AMI+V  +L +  L +++L+QIHDEL+ EV   
Sbjct: 792 NRQRREMAERAALNAPIQGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVEVAPG 851

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           E      I+    +K   P + L VPL V + V  +WQ
Sbjct: 852 EAAAVEAIV---RDKMATP-VELSVPLDVAVGVGRSWQ 885



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 147/277 (53%), Gaps = 10/277 (3%)

Query: 17  YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           +RAFYA P  S     G   NA+ GF +ML +LL+  +     +H AV FD    +FR E
Sbjct: 3   FRAFYALPPDSFVTATGQHTNAVYGFVSMLTRLLETEQP----THVAVAFDVSRHSFRTE 58

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
            YP+YK  R   PE    Q+ L+R    A GI ++  +GFEADDI+AT  Y A  +G  V
Sbjct: 59  EYPEYKGTRDATPEEFKGQVELIREVLDAMGIVSLSREGFEADDILATLAYRAGNDGATV 118

Query: 136 TIISTDKDLMQLVSP-TTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
            ++S D+D  Q V+   T LY         ++  + V +K+G+PP +   + A+ G++ D
Sbjct: 119 LVVSGDRDSFQTVTDNVTVLYPGTGPGDLRRMTPQAVEEKYGVPPHRYPEIAAIVGETSD 178

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
           N+PG+PG+G KTAA  + +Y  L+N+L  A  I   KR   + E+ +    +R+L  L T
Sbjct: 179 NLPGVPGVGPKTAAQWINKYDGLDNLLARADEIG-GKRGAALREHMDDVVRNRRLNRLLT 237

Query: 252 DVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           D+ + +    L     +   +     +LEF +L  +V
Sbjct: 238 DMDLEVSPSDLARRPTDVAAIDRLFDSLEFGRLRQKV 274


>gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 370

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 227/371 (61%), Gaps = 13/371 (3%)

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG----- 663
           L+ +IY L+  +FN+ SP+QLG++LF KL+ PSG KTKTG + T  + LE I        
Sbjct: 2   LQSDIYKLADGEFNIDSPQQLGEVLFEKLQIPSGKKTKTG-YSTNVEVLEMIANNRELTE 60

Query: 664 DNPII-KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           D  +I K +LE+R   K+ STY + +P   +K  +R+HT ++   T TGRL+S  PNLQN
Sbjct: 61  DKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKE-ERIHTTFNQNGTSTGRLSSANPNLQN 119

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++TD G +IR  F++     LIS DYSQIELR+LA ++K   L + ++++ D+H + A
Sbjct: 120 IPVRTDDGIRIRTGFVAKEGHSLISFDYSQIELRVLAELSKDRHLVKAYQDNQDLHDLTA 179

Query: 783 AEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            +IF    E ++S   R  AK INFSI+YG +PF L+ +L I   EA+ YI  YF  +P 
Sbjct: 180 RKIFFKTEEDEISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITTYFEEYPR 239

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + ++++      + +G+VET +G R +   IN+   +I+    R A+N  +QG+AA+I +
Sbjct: 240 VRKFLDIVTETAKLHGFVETFYGTRRYISGINATNKNIQAQAVRMAVNTVVQGTAANIIK 299

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           + MI +H+  ++ +   KMLLQ+HDEL+FEV +E      + I   ME     K   +VP
Sbjct: 300 KVMIELHEEFKNDE-NIKMLLQVHDELIFEVRDEFAKEYMKKIEKIMENTVKFK---KVP 355

Query: 962 LKVNIKVSNNW 972
           LK N  V+ NW
Sbjct: 356 LKANGSVAKNW 366


>gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 911

 Score =  264 bits (675), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 179/572 (31%), Positives = 310/572 (54%), Gaps = 42/572 (7%)

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--HRYGISM 483
             ++D      Q S  ++T      S  ++F  N +  K  ++IK    +L  H+Y +  
Sbjct: 353 NFYLDFKNKAQQLSFFEDTTLSSTDSLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLA 412

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
             F+ D M+  Y L++   S D+++         + +++ +      ID+I    V+++ 
Sbjct: 413 SNFDFDFMVACYSLNANVVS-DLSN---------QIKLVDNLIELETIDEIFGKGVKKNP 462

Query: 543 -----IENSNVILQLWLLLR-PKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQID 591
                I++  +  + +LL +    ++E+L       +Y ++D P+I+V+  +E+ GI ID
Sbjct: 463 DIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEVQGILID 522

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPSGAKTKT 647
           ++ LK  + +I K +  +E  +  L  E+    FN SSPKQ+ ++LF KLK P+  K   
Sbjct: 523 KEQLKLQTQQILKKINHIEWQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLPNLEKG-- 580

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               TT++++ +     +PII  +LE R+ +K+ +TY       I     +VHT ++   
Sbjct: 581 ----TTSKEVLEKLITYHPIINLLLEHRKYTKLYTTYLKGFEKFI-FDDNKVHTIFNHTL 635

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PN+QNI I+ +  +++R+ FI+   K  +S DYSQIELR+LA ++K T L
Sbjct: 636 TNTGRLSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNL 695

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F  + DIH   A  IF ++ ++++ + RR AK  NF I+YG++ F LA+ L +  ++
Sbjct: 696 INAFNQNADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDLNMNVNQ 755

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A   IK Y+  FP + ++ EK        GY+ T+  RR + +E+NS   +IR   +R A
Sbjct: 756 AKQMIKDYYSAFPSLLDFKEKQVEIATSKGYITTLSNRRRYINELNSTNHNIRQFGKRIA 815

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N PIQG+A+DI + AMIS++K L++  L  K++ QIHDE++ EV + ++    +I+V  
Sbjct: 816 VNTPIQGTASDILKVAMISIYKKLKEQNLDAKIICQIHDEIILEVDDNQLEQTKKIVVSE 875

Query: 948 MEKA---CLPKINLR----VPLKVNIKVSNNW 972
           +E A       +N++    V LKV   V   W
Sbjct: 876 LENALEKLFLDLNIKDQVVVKLKVGESVGKTW 907



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 152/302 (50%), Gaps = 21/302 (6%)

Query: 7   LFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +VDG+S I+RAFYAT       L +   G+  NA+  F NML  ++    +     H 
Sbjct: 5   ILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIH---QRGPYDHI 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR+++  DYKANR K P  L+ Q  +VR       I   E +  EADDI 
Sbjct: 62  LIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEADDIA 121

Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVS-PTTCL--YDTVKE-EKIDIEHVIKKWGIP 175
            +    AEK+       I+S+DKD+ QL++    CL     V E E++D   + +KW I 
Sbjct: 122 GSICKYAEKQFDNLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEVDTNKLFEKWQIL 181

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P ++   +A+ GDS DN+ G+ GIG K A  L+Q+Y NLENI  N  +IK   + + + +
Sbjct: 182 PNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYQNLENIYNNLEQIKGAIKTK-LEQ 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYD 293
             + A L + L  ++TDV     LE+   +  D N   +  FL   E   L  R     +
Sbjct: 241 DKKMAFLCKDLATIKTDV----TLENFSFKKLDFNVDNIYEFLNKYEMYSLKKRFTNILN 296

Query: 294 CD 295
            D
Sbjct: 297 LD 298


>gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1]
          Length = 850

 Score =  263 bits (673), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 149/420 (35%), Positives = 241/420 (57%), Gaps = 21/420 (5%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           + L  V E +D P+I V+ +ME  G+++D      +  E++  + ++E  + D++G   N
Sbjct: 443 QGLRDVMEGIDLPLIPVLLRMERWGVRLDPSRFAALQEELAARIRAIEAQVEDMAGTAVN 502

Query: 623 LSSPKQLGDILFTKLKF-PSG-AKTKTGQWKTTAQDLE---QINCGDNPIIKNILEWRQL 677
           L+SPKQ+ D+LF +L F P G  K KTG + T A  LE   ++  G+ P +  +LE R+L
Sbjct: 503 LNSPKQVADLLFVQLGFAPEGKTKGKTG-FSTGAAVLEHLARLPGGEVPAL--LLEHREL 559

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           SK++S +   L     +    +HT +  A T TGRL+S +PNLQNIP      ++I++  
Sbjct: 560 SKMQSGFVVPLQKAAEEGEGVIHTTFEPALTGTGRLSSRDPNLQNIPAFGQWAERIKQGL 619

Query: 738 ISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           +  P ++    ++ADYSQIELR+LAH+++   L + F N  DIHR  A+ +F +  E V+
Sbjct: 620 V--PVREGNVFVAADYSQIELRVLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFVT 677

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           P++RR AK INF ++YG+S F LA +L +PR EA+  +KRYF   PG+  +++       
Sbjct: 678 PELRRVAKMINFGLLYGMSAFGLAERLDMPRGEASMIVKRYFEALPGVQSFLKDIVKEAH 737

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
             G+  T+ GR    DE+    +  R   +R  +N PIQG+AADI R+AM+   ++   H
Sbjct: 738 AAGFARTLAGRIRPVDEVT---AQGRGGLDRVLVNTPIQGTAADIARKAMVDFDRAFR-H 793

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               ++ LQ+HD LV E P       ++ + HS+ +  +    L +PL+V +K  ++  E
Sbjct: 794 DGEVRLFLQVHDSLVCECP----AARAEEVGHSLREIMMNAATLSLPLEVQLKTGSSLAE 849



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 135/265 (50%), Gaps = 16/265 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKESI 57
           +  + L +VDG    YRAFYA   + R+     DG P   + GF NML+   +  +  ++
Sbjct: 15  KGRDRLLIVDGHGLAYRAFYA---MERQELSAPDGTPTGVLTGFMNMLFFAEERVKPRAV 71

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           A    V FD P  TFR+E+ P YKA R   PE    Q+PL++   +  G P +   G EA
Sbjct: 72  A----VAFDAPGPTFRHEMLPQYKATRKPSPEEFKAQVPLLQELLRLMGYPLLIQSGVEA 127

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKW 172
           DD++A+    A ++G+   ++S+DKDLMQ++ P   +   +K      E         + 
Sbjct: 128 DDVMASLALRATEKGWQAVLLSSDKDLMQVLGPGVLIMRPLKSGVSSAEIYSAADFEAEK 187

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G  P  +    AL GD  DN+PG+ GIG KTA  L+  +  LE +    S ++   R++ 
Sbjct: 188 GFSPSSVPDYLALLGDKADNVPGVAGIGEKTAGELISRWTTLEAVFDGLSEVRPAVRKKL 247

Query: 233 ILEYAETARLSRKLVMLRTDVPITI 257
                E A+ SR L+ LR DVP+ +
Sbjct: 248 EASGLEAAQRSRDLIRLRLDVPLDL 272


>gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bifidobacterium longum DJO10A]
          Length = 682

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 168/545 (30%), Positives = 289/545 (53%), Gaps = 28/545 (5%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSG 499
           +T  + + L +F ++EH   I H  K    +LH  G     + +  F D  L  Y+    
Sbjct: 146 ITDTLRAQLARFLKSEHSRTIVHGYKE---LLHLLGAVDLDMDLPMF-DTKLAGYLAQPD 201

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----HAIENSNVILQLWLL 555
             +  +   A+ +L     E  +  + ++  D   D QV+E    H + +  +I  L + 
Sbjct: 202 FHADSLKQAAEHFLDIHFTETEQPSQGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVT 258

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           L P +   +   +   ++ P+  V+  ME TG ++D   L  +  + +      +E  ++
Sbjct: 259 LGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWE 318

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIK 669
            +G + NL SPKQL  +LF  +      +TK+G + T A  L+ +      N   N  + 
Sbjct: 319 YAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLG 378

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            +L  R+++K+K     +L +  N   +R+HT +      TGRL+S++PNLQNIP +   
Sbjct: 379 ALLRHREINKLKQI-VQTLIDATNTSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAA 437

Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G++IR  F+     + L+S DYSQ+ELRI+A ++    L + F +  D H+ VA+ ++ +
Sbjct: 438 GREIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKL 497

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
            +++++   R H K +++ + YG+S + LA QL+I   EA     RYF  F  +H+Y+E 
Sbjct: 498 PVDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLES 557

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
                R+ GY ETIFGRR ++  ++S     R   ERAA+NAPIQGSAADI + AMI   
Sbjct: 558 LVANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAE 617

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           ++L +  + ++++LQIHDELV E+   E    ++++ ++ME A    ++L VPL V+  +
Sbjct: 618 QTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA----VDLAVPLDVSCGI 673

Query: 969 SNNWQ 973
            ++WQ
Sbjct: 674 GSDWQ 678


>gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 955

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 166/544 (30%), Positives = 286/544 (52%), Gaps = 26/544 (4%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE----DIMLMSYVLDSGR 500
           +T  + +   +F ++EH   I H  K    +LH  G      +    D  L  Y+     
Sbjct: 419 ITDTLRAQFARFLKSEHSRTIVHGYKE---LLHLLGAVDLDMDLPMFDTKLAGYLTQPDF 475

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----HAIENSNVILQLWLLL 556
            +  +   A+ +L     E  +  + ++  D   D QV+E    H + +  +I  L + L
Sbjct: 476 HADSLKQAAEHFLDIHFTETEQPSQGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTL 532

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
            P +   +   +   ++ P+  V+  ME TG ++D   L  +  + +      +E  ++ 
Sbjct: 533 GPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEY 592

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIKN 670
           +G + NL SPKQL  +LF  +      +TK+G + T A  L+ +      N   N  +  
Sbjct: 593 AGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGA 652

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           +L  R+++K+K     +L +  N   +R+HT +      TGRL+S++PNLQNIP +   G
Sbjct: 653 LLRHREINKLKQI-VQTLIDATNTSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAG 711

Query: 731 QKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           ++IR  F+     + L+S DYSQ+ELRI+A ++    L + F +  D H+ VA+ ++ + 
Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLP 771

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +++++   R H K +++ + YG+S + LA QL+I   EA     RYF  F  +H+Y+E  
Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
               R+ GY ETIFGRR ++  ++S     R   ERAA+NAPIQGSAADI + AMI   +
Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
           +L +  + ++++LQIHDELV E+   E    ++++ ++ME A    ++L VPL V+  + 
Sbjct: 892 TLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIG 947

Query: 970 NNWQ 973
           ++WQ
Sbjct: 948 SDWQ 951



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 159/298 (53%), Gaps = 15/298 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 14  LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 70  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKSGFEGDDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     ++ K+ + P + 
Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIVDKYKVTPAQY 187

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANIDQ 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDA 296
            +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A
Sbjct: 247 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTRSRVLKTFNTGA 304


>gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 950

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 166/544 (30%), Positives = 286/544 (52%), Gaps = 26/544 (4%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE----DIMLMSYVLDSGR 500
           +T  + +   +F ++EH   I H  K    +LH  G      +    D  L  Y+     
Sbjct: 414 ITDTLRAQFARFLKSEHSRTIVHGYKE---LLHLLGAVDLDMDLPMFDTKLAGYLTQPDF 470

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----HAIENSNVILQLWLLL 556
            +  +   A+ +L     E  +  + ++  D   D QV+E    H + +  +I  L + L
Sbjct: 471 HADSLKQAAEHFLDIHFTETEQPSQGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTL 527

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
            P +   +   +   ++ P+  V+  ME TG ++D   L  +  + +      +E  ++ 
Sbjct: 528 GPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEY 587

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIKN 670
           +G + NL SPKQL  +LF  +      +TK+G + T A  L+ +      N   N  +  
Sbjct: 588 AGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGA 647

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           +L  R+++K+K     +L +  N   +R+HT +      TGRL+S++PNLQNIP +   G
Sbjct: 648 LLRHREINKLKQI-VQTLIDATNTSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAG 706

Query: 731 QKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           ++IR  F+     + L+S DYSQ+ELRI+A ++    L + F +  D H+ VA+ ++ + 
Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLP 766

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +++++   R H K +++ + YG+S + LA QL+I   EA     RYF  F  +H+Y+E  
Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
               R+ GY ETIFGRR ++  ++S     R   ERAA+NAPIQGSAADI + AMI   +
Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
           +L +  + ++++LQIHDELV E+   E    ++++ ++ME A    ++L VPL V+  + 
Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIG 942

Query: 970 NNWQ 973
           ++WQ
Sbjct: 943 SDWQ 946



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 159/298 (53%), Gaps = 15/298 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 9   LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 65  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKSGFEGDDVIATLA 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     ++ K+ + P + 
Sbjct: 125 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIVDKYKVTPAQY 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 183 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANIDQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDA 296
            +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A
Sbjct: 242 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTRSRVLKTFNTGA 299


>gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
 gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
          Length = 854

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 247/443 (55%), Gaps = 25/443 (5%)

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK-------PMIDVVSQMEITG 587
           +S   E   +   +  QLW   R K  +   +  Y+ LDK       P+I V+ +ME  G
Sbjct: 413 ESWAAESIADPVEIAGQLW---RVKNDLSSNIAQYQGLDKLMRDVEIPLIPVLWRMETWG 469

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I ++++    + +++   ++ +E+ I +  GE+ NL+SPKQ+  +LF KL  P   +TKT
Sbjct: 470 IGLNRESFNGLDSDLEIRIVEIEDTIAEKGGERINLNSPKQVAWLLFEKLNMPPIKETKT 529

Query: 648 GQWK--TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           G     T  ++L ++   +  + + ILE R+LSK++S +   L +  ++ T  +H  +  
Sbjct: 530 GYSTDVTVLEELVKMGLPEKEVPELILEHRELSKMRSGFVHPLVSAADENTDLIHGTFES 589

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIA 762
            ST TGRL+S +PNLQN+P       +++   +  P K     ++ADYSQ+ELR+LAH+ 
Sbjct: 590 TSTGTGRLSSRDPNLQNLPAFGQWSTRLKEGLV--PHKDGNIFVAADYSQVELRVLAHLC 647

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L + FE   DIH   A+ IF VN + V+P++RR AK +NF ++YG+S F LA++L 
Sbjct: 648 DEKRLKEAFEARRDIHTETASWIFNVNPQMVTPELRRFAKVVNFGLLYGMSSFGLASRLG 707

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN-SPKSSIRN 881
           I + EA D I RYF   P + +YIEK+    R+ GY  T FGR    DE++ +P+   R 
Sbjct: 708 IGQQEAGDIINRYFRALPKVRDYIEKSYQDARKRGYAVTDFGRIRPLDEVSVNPRD--RG 765

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             +R A+N PIQG+AADI R AMI  +K  E  +    ++LQIHD LV E   EE     
Sbjct: 766 ALKRIAVNTPIQGTAADIARMAMIKFYKHFEKRQ-NVHLVLQIHDSLVCECAAEEKEAVV 824

Query: 942 QIIVHSMEKACLPKINLRVPLKV 964
           + +   ME A      L VPLKV
Sbjct: 825 KDLTDIMESAA----TLSVPLKV 843



 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 164/290 (56%), Gaps = 12/290 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K+  + LVDG +  +RAFYA P L+   DG P NAI GF NM++K + +   +  A    
Sbjct: 5   KDKTVLLVDGHALAFRAFYALPELTAP-DGTPTNAILGFINMMFKTIDDCHPDMTA---- 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD P  TFR+EIYP+YK  R   PE    Q+PL++   +A GI  +  +G EADD+IA
Sbjct: 60  VVFDAPGATFRHEIYPEYKMGRRPTPEEYKVQVPLLQQVVRAMGIKVVVKEGVEADDVIA 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----VIKKWGIPPEK 178
           +    A + G  V  +++DKD++Q++ P   +   +K      E+      ++WG PP  
Sbjct: 120 SAVCGAARLGVKVIALTSDKDILQVLQPGVRIIRPIKGVSTFTEYNEASFEEEWGFPPTV 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M    AL GD++DNIPG+PG+G KTA  LL +Y +LE+I  +   +K   +++  +E  E
Sbjct: 180 MPDYLALLGDAVDNIPGVPGVGEKTAKKLLSQYVSLEDIYDHLDELKPGLQKK-FIEAKE 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           TA  SR+L+ L+ D+P+T+  E     + N        + L   K++ RV
Sbjct: 239 TAFKSRELIRLKCDLPLTV--EEFTQTEVNFESFEELCRRLGLHKILERV 286


>gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 911

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 191/625 (30%), Positives = 319/625 (51%), Gaps = 50/625 (8%)

Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTSFKVETIFID 430
           ++ K I  W +  E   S ++  +    + +H  K I I IS               ++D
Sbjct: 309 LDVKIINSWSKDYE--DSINYLYVESLEEDYHKDKIIGIGISN---------NKGNFYLD 357

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--HRYGISMRGFE- 487
                 Q S  ++T      S  ++F  N +  K  ++IK    +L  H+Y +    F+ 
Sbjct: 358 FKNKAQQLSFFEDTTLSSTDSLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDF 417

Query: 488 DIMLMSYVLDSG---RSSHDIASIAQKWLSYTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543
           D M+  Y L++      S+ I  +       T  EI  K  K +  ID      ++   I
Sbjct: 418 DFMVACYSLNANVISDLSNQIKLVDNMIELETIDEIFGKGVKKNPDID----LDIKSKYI 473

Query: 544 ENSNVILQLWLLLRPKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                +L+ +       ++E+L       +Y ++D P+I+V+  +E+ GI ID++ LK  
Sbjct: 474 SKKAYLLKKY----SDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQ 529

Query: 599 SAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           + +I K +  +E  +  L  E+    FN SSPKQ+ ++LF KLK P+  K       TT+
Sbjct: 530 TQQILKKINHIEGQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLPNLEKG------TTS 583

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +++ +     +PII  +LE R+ +K+  TY       I     +VHT ++   T TGRL+
Sbjct: 584 KEVLEKLITFHPIINLLLEHRKYTKLYITYLKGFEKFI-FDDNKVHTIFNHTLTNTGRLS 642

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PN+QNI I+ +  +++R+ FI+   K  +S DYSQIELR+LA ++K + L + F   
Sbjct: 643 SSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQD 702

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A  IF ++ ++++ + RR AK  NF I+YG++ F LA  L +  ++A   IK 
Sbjct: 703 ADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLANDLNMNVNQAKQMIKD 762

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y+  FP + ++ EK        GY+ T+  RR + DE+NS   +IR   +R A+N PIQG
Sbjct: 763 YYSAFPSLLDFKEKQVEIATNQGYITTLSNRRRYIDELNSTNHNIRQFGKRIAVNTPIQG 822

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA--- 951
           +A+DI + AMIS++K L++  L  +++ QIHDE++ EV + ++    +I+V  +E A   
Sbjct: 823 TASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVNDNQLEQTKKIVVSELENALEK 882

Query: 952 CLPKINLR----VPLKVNIKVSNNW 972
               +N++    V LKV   V   W
Sbjct: 883 LFLDLNIKEQVVVKLKVGESVGKTW 907



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 152/302 (50%), Gaps = 21/302 (6%)

Query: 7   LFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +VDG+S I+RAFYAT       L +   G+  NA+  F NML  ++    +     H 
Sbjct: 5   ILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIH---QRGPYDHI 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR+++  DYKANR K P  L+ Q  +VR       I   E +  EADDI+
Sbjct: 62  LIAFDKSKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEADDIV 121

Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVS-PTTCL--YDTVKE-EKIDIEHVIKKWGIP 175
            +    AEK+       I+S+DKD+ QL++    CL     V E E++D   + +KW I 
Sbjct: 122 GSICKYAEKQFDDLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEVDTNKLFEKWQIL 181

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P ++   +A+ GDS DN+ G+ GIG K A  L+Q+Y +LENI  +  ++K   + + + +
Sbjct: 182 PNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYESLENIYNSLEQLKGAIKTK-LEQ 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYD 293
             + A L + L  ++TDV     LE+      D N   +  FL   E   L  R     +
Sbjct: 241 DKKMAFLCKDLATIKTDV----VLENFSFNKLDFNVDNIYEFLNKYEMYSLKKRFTNILN 296

Query: 294 CD 295
            D
Sbjct: 297 LD 298


>gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
 gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
          Length = 905

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/404 (37%), Positives = 222/404 (54%), Gaps = 9/404 (2%)

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+  V++++E TGI  D   L  +    +  +       YD  G + NL SPKQL ++LF
Sbjct: 508 PLSAVLARVEATGIATDTAYLTGLERGFADQVAQAAAEAYDAIGHEVNLGSPKQLQEVLF 567

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HIN 693
            +L  P   KTKTG     A   E      +P ++++L  R  +K++ T    L + H +
Sbjct: 568 GELDMPKTKKTKTGYTTDAAALAELYAKTGHPFLEHLLAHRDAAKLRVTVEGLLKSVHPD 627

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQ 752
            R   +HT +      TGRL+S EPNLQNIPI+T+ G++IRRAF +    + L++ADYSQ
Sbjct: 628 GR---IHTTFQQTIAATGRLSSTEPNLQNIPIRTEAGRQIRRAFRVGEGFESLLTADYSQ 684

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IE+RI+AH++    L + F    D+HR V + +FGV    V+ +MR   K +++ + YG+
Sbjct: 685 IEMRIMAHLSGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVKAMSYGLAYGL 744

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL I   EA   +  YF RF G+ EY++      R  GY  T+ GRR +  ++
Sbjct: 745 SAFGLSQQLGIATGEAQGLMDDYFARFGGVREYLDGVVEEARATGYTATVLGRRRYLPDL 804

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S     R + ER A+NAPIQGSAADI + AM+ V + L+   L +++LLQ+HDELV EV
Sbjct: 805 TSDNRQRRQMAERMALNAPIQGSAADIIKLAMLGVQRELDARGLRSRLLLQVHDELVVEV 864

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              E   A  ++   M  A      L VPL V++     W +  
Sbjct: 865 APGEREAAEDVLRTQMGAA----YTLDVPLDVSVGSGETWHDAG 904



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/286 (37%), Positives = 153/286 (53%), Gaps = 9/286 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG S  YRAFYA P       G   NA+ GF +ML KLL + +     +H AV FD
Sbjct: 19  LLLIDGHSMAYRAFYALPDTMATTSGQVTNAVYGFTSMLTKLLGDEQP----THLAVAFD 74

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FR E Y +YK  R + P     Q+PL++   +A  +P +E +GFEADDIIAT   
Sbjct: 75  VSRRSFRTERYAEYKGTRSETPPPFKGQVPLIKDVLEALRVPTLEREGFEADDIIATLAG 134

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            A   G  V + S D+D +QLV     L   V+      +   E V +K+G+PPE+   L
Sbjct: 135 QASAAGMEVLVCSGDRDSIQLVDADVTLLYPVRGVSEMARFTPETVAEKYGVPPEQYPDL 194

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL G+S DN+PG+PG+G KTAA  + ++G LE +L     +K K   EN+    +  RL
Sbjct: 195 AALVGESSDNLPGVPGVGPKTAAKWVTQFGGLEPLLAGVGELKGKA-AENLRAAVDQVRL 253

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +R+L  L  DV +    + L+L   +   +     AL+F  L +R+
Sbjct: 254 NRELNALLRDVVLEYGPDDLVLRGFDREAVHRIADALQFGVLRDRL 299


>gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 905

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 165/527 (31%), Positives = 276/527 (52%), Gaps = 41/527 (7%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G  + G   D  L +Y++  GR S  + +++   + Y  +E++ 
Sbjct: 399 KVMHNAKDALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALS---VEYLHRELVP 455

Query: 523 SRKSSIPIDKISDSQV----QEHA-----IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
           +          +D Q+     EHA     +  +  +L L      +L       +   ++
Sbjct: 456 A---------AADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHDME 506

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P  +++++ME  GI  D+  L+ +    +  +    +  +   G +FNL SPKQL ++ 
Sbjct: 507 LPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHATVGHEFNLGSPKQLQEVF 566

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDN----PIIKNILEWRQLSKIKSTYADS 687
           F +L  P   KTKT        D + +    G      P+I  +L  R+ ++++ST  + 
Sbjct: 567 FGELNLPKTKKTKT----GYTTDADALAWLAGQTEHELPVI--MLRHREQARLRSTV-EG 619

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   +     R+HT +S     TGRL+S +PNLQN+P++TD G+ IRR F+     + L+
Sbjct: 620 LIKTVAA-DGRIHTTFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLM 678

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQIELR++AH+++   L + F +  D+H  VA+++FGV   +V  +MRR  K +++
Sbjct: 679 TADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSY 738

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            + YG+S F L+ QL I   EA   +  YF RF G+ +Y+    +  R  GY  T+ GRR
Sbjct: 739 GLAYGLSAFGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRR 798

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  ++NS     R   ER A+NAPIQG+AADI + AM+ V ++L +  L++++LLQ+HD
Sbjct: 799 RYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHD 858

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           E+V E+   E      I+   M  A    + L  PL V++ V  +W+
Sbjct: 859 EIVLEISPGERDEVETIVRREMSSA----VELSAPLDVSVGVGADWE 901



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/327 (35%), Positives = 168/327 (51%), Gaps = 25/327 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G   NAI GF +ML     N+ ++   +HFAV F
Sbjct: 19  LLLMDGHSLAYRAFFALPAENFSTASGQTTNAIYGFASML----ANTLRDEAPTHFAVAF 74

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R++ YP+YKANR   P+    Q+ L+             + GFEADDIIAT  
Sbjct: 75  DVSRKTWRSKDYPEYKANRSATPDEFKGQVELIGELLDTMNAVRFAVDGFEADDIIATLA 134

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EGF V I++ D+D  QLVS  TT LY T  V E  +   E V +K+G+ P +   
Sbjct: 135 TQAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVQEKYGLTPSQYPD 194

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   ++  ++ E  +
Sbjct: 195 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKV-GQSFRDHLEAVK 253

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299
           L+R L  L  DV +  P+  L     +   L +FL+ LE     L  R+           
Sbjct: 254 LNRHLTELVRDVELAKPVAGLERAPYDRSALKNFLEILEIRNPSLRERL----------- 302

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTI 326
             + +D   TE++  A E  I+ D ++
Sbjct: 303 --LAVDPGATEDEAPAPEAGIELDGSV 327


>gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
 gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
          Length = 848

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/403 (35%), Positives = 224/403 (55%), Gaps = 11/403 (2%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +D P++  + +ME  G+ +D   +   +A++  +L  +   I   +G   NL+SPKQ+G+
Sbjct: 450 VDLPLLPALVRMEQAGVHLDGPAMVAFTAQLEASLDRVSGEILTYAGGPINLNSPKQVGE 509

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCGD-NPIIKNILEWRQLSKIKSTYADSL 688
           +LF KL  P   +T    + T    LE +  + GD  P+   +LE R+LSK+ S +A  +
Sbjct: 510 LLFEKLGLPVIKRTAQKGYSTDVSVLETLCRSVGDICPVPALLLEHRELSKMLSGFA--V 567

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P     R   VH+ +   +T TGRL+S +PNLQN+P  ++LG ++ R   + P    ++A
Sbjct: 568 PLAAASRDGVVHSTFEAQTTGTGRLSSRDPNLQNLPNYSELGGQLCRCLTAGPGGVFVAA 627

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR+LAH++    L ++FE   DIH   AA I G+  + V+ + RR AKT+ F +
Sbjct: 628 DYSQIELRVLAHLSGERRLREIFEAGRDIHTETAAMILGIPADSVTKEQRRMAKTVTFGL 687

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YG+S F LA +L + ++EA   +  YF   PG+ EY++ T    R+ GY +T +GR   
Sbjct: 688 LYGMSAFGLADRLSVGQAEARGIMDAYFAALPGVREYVDATVAEARRRGYSQTAYGRIRP 747

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
            DE+ + + + R    R AIN+P+QG+AADIT+ AMI+V + L        M+LQ+HD +
Sbjct: 748 LDEVATGRQTDRGHARRVAINSPVQGTAADITKMAMITVDRELA--AAGVPMVLQVHDSI 805

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           V     E      + +   M  A    + L VPL V  K    
Sbjct: 806 VCRTTPENAEPVGKKLAEFMTGA----VKLSVPLAVETKTGKT 844



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 137/257 (53%), Gaps = 11/257 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG    +RAF+A P ++   +G   NA  GF NML + +   + + +     V
Sbjct: 10  ERRILLVDGHGIAFRAFFALPEMTAP-NGTHTNAAVGFFNMLGRAVTAHQPDRVV----V 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E++ DYKANRP  P     Q+P++     + GI  +E  G EADD+I  
Sbjct: 65  AFDMKGPTFRHELFADYKANRPATPPEFSEQMPIIHQLLASAGIDVMESAGLEADDLIGA 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                  E   + I+S+DKD++Q++ P   +    K     E +  E   ++WG PP  M
Sbjct: 125 AA-CQWSEDAQILILSSDKDILQVLGPGVTILRPAKGVSDVEIVTAESFAQEWGFPPRLM 183

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V   AL GD +DN+PG+P +G KTA  LL  YG++E IL +A   +    R+ + E+   
Sbjct: 184 VDYLALVGDKVDNVPGVPSVGDKTAKRLLSSYGSIEGILEHADE-QTPALRKKLGEFGAQ 242

Query: 240 ARLSRKLVMLRTDVPIT 256
           A  +RKL  LR DV +T
Sbjct: 243 ALETRKLTKLRCDVDMT 259


>gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 884

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 165/527 (31%), Positives = 276/527 (52%), Gaps = 41/527 (7%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G  + G   D  L +Y++  GR S  + +++   + Y  +E++ 
Sbjct: 378 KVMHNAKDALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALS---VEYLHRELVP 434

Query: 523 SRKSSIPIDKISDSQV----QEHA-----IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
           +          +D Q+     EHA     +  +  +L L      +L       +   ++
Sbjct: 435 A---------AADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHDME 485

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P  +++++ME  GI  D+  L+ +    +  +    +  +   G +FNL SPKQL ++ 
Sbjct: 486 LPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHATVGHEFNLGSPKQLQEVF 545

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDN----PIIKNILEWRQLSKIKSTYADS 687
           F +L  P   KTKT        D + +    G      P+I  +L  R+ ++++ST  + 
Sbjct: 546 FGELNLPKTKKTKT----GYTTDADALAWLAGQTEHELPVI--MLRHREQARLRSTV-EG 598

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   +     R+HT +S     TGRL+S +PNLQN+P++TD G+ IRR F+     + L+
Sbjct: 599 LIKTVAA-DGRIHTTFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLM 657

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQIELR++AH+++   L + F +  D+H  VA+++FGV   +V  +MRR  K +++
Sbjct: 658 TADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSY 717

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            + YG+S F L+ QL I   EA   +  YF RF G+ +Y+    +  R  GY  T+ GRR
Sbjct: 718 GLAYGLSAFGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRR 777

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  ++NS     R   ER A+NAPIQG+AADI + AM+ V ++L +  L++++LLQ+HD
Sbjct: 778 RYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHD 837

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           E+V E+   E      I+   M  A    + L  PL V++ V  +W+
Sbjct: 838 EIVLEISPGERDEVETIVRREMSSA----VELSAPLDVSVGVGADWE 880



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/324 (35%), Positives = 166/324 (51%), Gaps = 25/324 (7%)

Query: 10  VDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +DG S  YRAF+A P  +     G   NAI GF +ML     N+ ++   +HFAV FD  
Sbjct: 1   MDGHSLAYRAFFALPAENFSTASGQTTNAIYGFASML----ANTLRDEAPTHFAVAFDVS 56

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             T+R++ YP+YKANR   P+    Q+ L+             + GFEADDIIAT    A
Sbjct: 57  RKTWRSKDYPEYKANRSATPDEFKGQVELIGELLDTMNAVRFAVDGFEADDIIATLATQA 116

Query: 129 EKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVCLQA 184
           E EGF V I++ D+D  QLVS  TT LY T  V E  +   E V +K+G+ P +     A
Sbjct: 117 EAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVQEKYGLTPSQYPDFAA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   ++  ++ E  +L+R
Sbjct: 177 LRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKV-GQSFRDHLEAVKLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANIEPV 302
            L  L  DV +  P+  L     +   L +FL+ LE     L  R+             +
Sbjct: 236 HLTELVRDVELAKPVAGLERAPYDRSALKNFLEILEIRNPSLRERL-------------L 282

Query: 303 VLDINTTENKGIAIETEIDRDTTI 326
            +D   TE++  A E  I+ D ++
Sbjct: 283 AVDPGATEDEAPAPEAGIELDGSV 306


>gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 913

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 165/527 (31%), Positives = 276/527 (52%), Gaps = 41/527 (7%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ HN K    V   +G  + G   D  L +Y++  GR S  + +++   + Y  +E++ 
Sbjct: 407 KVMHNAKDALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALS---VEYLHRELVP 463

Query: 523 SRKSSIPIDKISDSQV----QEHA-----IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
           +          +D Q+     EHA     +  +  +L L      +L       +   ++
Sbjct: 464 A---------AADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHDME 514

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P  +++++ME  GI  D+  L+ +    +  +    +  +   G +FNL SPKQL ++ 
Sbjct: 515 LPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHATVGHEFNLGSPKQLQEVF 574

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDN----PIIKNILEWRQLSKIKSTYADS 687
           F +L  P   KTKT        D + +    G      P+I  +L  R+ ++++ST  + 
Sbjct: 575 FGELNLPKTKKTKT----GYTTDADALAWLAGQTEHELPVI--MLRHREQARLRSTV-EG 627

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746
           L   +     R+HT +S     TGRL+S +PNLQN+P++TD G+ IRR F+     + L+
Sbjct: 628 LIKTVAA-DGRIHTTFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLM 686

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQIELR++AH+++   L + F +  D+H  VA+++FGV   +V  +MRR  K +++
Sbjct: 687 TADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSY 746

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            + YG+S F L+ QL I   EA   +  YF RF G+ +Y+    +  R  GY  T+ GRR
Sbjct: 747 GLAYGLSAFGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRR 806

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  ++NS     R   ER A+NAPIQG+AADI + AM+ V ++L +  L++++LLQ+HD
Sbjct: 807 RYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHD 866

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           E+V E+   E      I+   M  A    + L  PL V++ V  +W+
Sbjct: 867 EIVLEISPGERDEVETIVRREMSSA----VELSAPLDVSVGVGADWE 909



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/327 (35%), Positives = 168/327 (51%), Gaps = 25/327 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G   NAI GF +ML     N+ ++   +HFAV F
Sbjct: 27  LLLMDGHSLAYRAFFALPAENFSTASGQTTNAIYGFASML----ANTLRDEAPTHFAVAF 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R++ YP+YKANR   P+    Q+ L+             + GFEADDIIAT  
Sbjct: 83  DVSRKTWRSKDYPEYKANRSATPDEFKGQVELIGELLDTMNAVRFAVDGFEADDIIATLA 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE EGF V I++ D+D  QLVS  TT LY T  V E  +   E V +K+G+ P +   
Sbjct: 143 TQAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVQEKYGLTPSQYPD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   ++  ++ E  +
Sbjct: 203 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKV-GQSFRDHLEAVK 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299
           L+R L  L  DV +  P+  L     +   L +FL+ LE     L  R+           
Sbjct: 262 LNRHLTELVRDVELAKPVAGLERAPYDRSALKNFLEILEIRNPSLRERL----------- 310

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTI 326
             + +D   TE++  A E  I+ D ++
Sbjct: 311 --LAVDPGATEDEAPAPEAGIELDGSV 335


>gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 836

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 147/426 (34%), Positives = 237/426 (55%), Gaps = 17/426 (3%)

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           LW  +R   + E +  +  R+D P+  V+  ME  GI +D + L+ +   + + L +LEE
Sbjct: 418 LWDQIRSDPLWEGVRELVTRVDHPLSAVLVDMEREGIGLDVEGLRGLRERLERALGALEE 477

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK-- 669
            I   +G + NL SPKQ+  +LF +L  P   +TKTG   T    LE+++    P+ +  
Sbjct: 478 GIAREAGAQVNLQSPKQVAWLLFERLGLPPVKRTKTGL-STDVGVLEELSRLPEPLGRVP 536

Query: 670 -NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
             ILE R++SK+ + + +  P      +  + + +    T TGRL+S +PN+QN+P    
Sbjct: 537 SMILEHREISKLITAFVN--PFLEQGSSGVIRSTFDQTGTGTGRLSSRDPNVQNLPQFGH 594

Query: 729 LGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
              + RR  +  P ++    +SADYSQIELR+LAH++    L + FE   D+H   A+ I
Sbjct: 595 WAVEFRRCLV--PVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVHARTASWI 652

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           +GV+ + VSP+ RR AK +NF ++YG+    LA ++ + RSEAA+ ++RYF   PG+ E+
Sbjct: 653 YGVDPQAVSPEQRRFAKVVNFGLLYGMGAHGLAQRMGVSRSEAAEVMERYFSALPGVREF 712

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             +     +  GY  T+ GR     E+++ +       +R AIN PIQGSAADI R+AM+
Sbjct: 713 TRRMVEQAKARGYAATLMGRVRPLSEVSTVEGRGAGAIDRVAINTPIQGSAADIARKAMV 772

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            +H++L       +M+LQ+HD +V  VPE   +  ++++   ME A     +L VPL V 
Sbjct: 773 ELHRALAGGD--CRMVLQVHDSIVCSVPEGMASRVAELMREVMEGAA----SLSVPLVVE 826

Query: 966 IKVSNN 971
           +K    
Sbjct: 827 VKTGGT 832



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/322 (36%), Positives = 169/322 (52%), Gaps = 23/322 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +   LVDG    +RAFYA P LS   DG PVNA+ GF NML+K+L++ R     + +A+ 
Sbjct: 3   DRFLLVDGHGLAFRAFYALPALS-APDGTPVNAVLGFLNMLYKVLEDQRP----TGWAIF 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P    R E+   YKA R   P+    QLP++    +A G P    +G EADD+IA  
Sbjct: 58  FDPPGPVIRREVLESYKAGRRPTPQEFKVQLPIIIDLLEALGHPVHVREGQEADDVIAAT 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---EEKI-DIEHVIKKWGIPPEKMV 180
                  G  V I+S DKDL+Q++SP+  +   VK   E ++ D E  ++++  PP  M 
Sbjct: 118 AVNLSGSG-EVVILSADKDLLQVISPSVKVCRPVKGVSEFRVYDQEAFLEEYRFPPALMA 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              ALTGDS+DNIPG+PGIG K A  L+   G LE+I     R+   KR+  + E  E A
Sbjct: 177 DYLALTGDSVDNIPGVPGIGDKGARELVSSLGPLESIYEALDRLSPAKRK-RLEEGRELA 235

Query: 241 RLSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            LSR+LV+    VP  ++ +  L+  +    R +  L+ L   +LI R+        A +
Sbjct: 236 FLSRQLVL---PVPTESLDVRDLVPREAQRGRALRILEGLAMRQLIQRLGLDGADRGAGV 292

Query: 300 EPVVLDINTTENKGIAIETEID 321
           E          + G A+E+ ++
Sbjct: 293 E--------VSSTGGAVESSLE 306


>gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201]
 gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201]
          Length = 960

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 152/429 (35%), Positives = 232/429 (54%), Gaps = 16/429 (3%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           LR  L  +  L +   L+ P+  ++++ME TGI +D+  +  +  ++   +    E    
Sbjct: 535 LRALLEADGQLGLLTELEMPLAVILARMEATGIAMDRPGIDVLFEDLQHPIDQAFEQAQA 594

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-----NCGDNPIIKN 670
               + NL S KQL  ++F +L  P   KTKTG     +   + I     +   +  +  
Sbjct: 595 QIDHEVNLGSTKQLQAVMFDELGLPKTKKTKTGYTTDASAVADLIGKVSPDTAGSRFLVA 654

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           ++ WR+ SK+K   A  L + I +   R+HT Y      TGRL+S  PNLQNIP++T+ G
Sbjct: 655 LMNWREYSKLKQIVA-GLRDAIAE-DGRIHTTYQQTVAATGRLSSTGPNLQNIPVRTEQG 712

Query: 731 QKIRRAFI-----SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           Q+IR  F+       P + L++ADYSQIE+RI+AH++    L + F    D+HR V + +
Sbjct: 713 QRIRDVFVVGEDTQGPFECLMTADYSQIEMRIMAHLSGDEGLIEAFRGGEDLHRFVGSRV 772

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F V  E V+PQMR   K +++ ++YG+S + L+ QL I   EA   +  YF RF G+ ++
Sbjct: 773 FDVAPEDVTPQMRSKVKAMSYGLVYGLSSYGLSQQLHIGVDEARTMMSGYFERFGGVRDF 832

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +       R  GY ETI GRR +  ++ S     R   ER A+NAPIQGSAADI ++AMI
Sbjct: 833 LRGVVEEARSKGYTETIDGRRRYLPDLTSDNRQARQAAERMALNAPIQGSAADIIKKAMI 892

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V ++L D +L +++LLQ+HDEL+ EV   E     +I+   M  A      L VPL VN
Sbjct: 893 GVDRALRDGQLRSRVLLQVHDELIVEVAPGEREEVERILRTEMAGAA----ELTVPLDVN 948

Query: 966 IKVSNNWQE 974
           +     W +
Sbjct: 949 VGTGRTWHQ 957



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 163/320 (50%), Gaps = 29/320 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRK-----------HDGLPVNAIAGFCNMLWKLLQNS 52
           E  L L+DG S  +RAF+A   LSR             +G+    + GF N + KL+   
Sbjct: 40  EKRLLLIDGHSLAFRAFFA---LSRAAEYGNGPGFVTSEGVHTEGVYGFVNTMVKLV--- 93

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
            +E   +H  V FD    T R++ Y +YK  R + PE    Q+P ++   +A G+P + +
Sbjct: 94  -REEKPTHLVVSFDLEGPTLRSQEYGEYKGGRDETPEEFHGQVPNIQRVLEALGVPIVTM 152

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE---EKIDIEHV 168
           +G EADD++AT    A  E F V + S D+D  Q+++   T +Y         ++D   V
Sbjct: 153 EGHEADDVLATLASRAAAEDFEVLVFSGDRDAFQMITDHVTVVYPGRTPSDLRRMDAAAV 212

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +K+ + P+    L ALTG++ DN+PG+PG+G   AA  +  YG ++++L +A +I  KK
Sbjct: 213 YEKYKVAPQNYPDLAALTGETADNLPGVPGVGPGFAAKWITAYGPVDSLLEHAGQITGKK 272

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINR 287
             E + E  E  R +RKL  L TD+P+ I L    L   +  R+      LEF ++L  R
Sbjct: 273 -GEALRENEELVRRNRKLNRLVTDLPLEIDLSATALPKAHAERVAEVFDELEFGSQLRGR 331

Query: 288 V-----ATTYDCDAANIEPV 302
           +     A T   D A + PV
Sbjct: 332 LLEAFAAQTSGDDVAALAPV 351


>gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 854

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 159/435 (36%), Positives = 249/435 (57%), Gaps = 20/435 (4%)

Query: 550 LQLWLL---LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
           + LW L   L   +    L  V   +D P++ V+  ME +GI++++ +L+ V +++ + L
Sbjct: 429 MALWRLRDDLSQTIESRGLSEVLYGIDMPLVPVLVSMEKSGIKLEEPVLQDVISDLKERL 488

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             + E I   +GE  NL+SPKQ+G +LF KL  P   KTKTG + T    LEQ+     P
Sbjct: 489 ERIVEEITSAAGESINLNSPKQVGCLLFEKLGLPPVKKTKTG-YSTDVTVLEQLAELPEP 547

Query: 667 ---IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
              +   +LE R LSK+ S +A  L + +        TF S  +T TGRL+S +PNLQN+
Sbjct: 548 HNAVPSMLLEHRALSKMSSGFALPLMSSVCGDGIIRSTFES-DTTGTGRLSSRDPNLQNL 606

Query: 724 PIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           P   +   +I+ + I  P +K    ++ADYSQ+ELR+LAHI+    L  +F +  DIH  
Sbjct: 607 PAYGEWSDRIKSSLI--PREKGRCFVAADYSQVELRVLAHISGEKRLADIFRSGRDIHTE 664

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+ +FGV+   V+ ++RR AK + F ++YG+S F LA +L + RSEA   + RYF   P
Sbjct: 665 TASMVFGVDSSMVTKELRRSAKMVTFGLLYGMSAFGLAKRLGVGRSEADRIMSRYFAALP 724

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+ K+ +     GY ET+FGR    +E+ +  +  R    R AIN+PIQG+AAD+ 
Sbjct: 725 GVEAYVTKSADEAIAKGYTETLFGRIRPLEEVVTGNTRDRGHIRRVAINSPIQGTAADLA 784

Query: 901 RRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
           ++AMI+V +S  ED  ++  M+LQ+HD +V E PEE     S+ ++  +++      +L 
Sbjct: 785 KKAMIAVSRSFAEDPDVS--MVLQVHDSIVCECPEER----SEEVLAELQEIMKNVASLA 838

Query: 960 VPLKVNIKVSNNWQE 974
           VPL+   K+  +  E
Sbjct: 839 VPLETEGKIGFSLAE 853



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 142/252 (56%), Gaps = 13/252 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  +  VDG    +RAFYA P L+   DG P NA+ GF NML K+    +KE      +V
Sbjct: 3   EGPIMFVDGHGLAFRAFYAIPELT-APDGTPTNALVGFFNMLSKI----KKEWAPQSLSV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  TFR+E++ +YK  R   PE    QLP+++      GIP I   G EADD+I  
Sbjct: 58  VFDAPGKTFRHEMFEEYKKGRKPTPEEFKVQLPILKKMLGLLGIPVICRPGVEADDVIGA 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +     +G  V ++++DKD++Q++     +    K      + D E    ++G PP +M
Sbjct: 118 VSREYAYKGTPVLVVTSDKDMLQILDEGITVIRPGKGISSFNRWDAETFQGEYGFPPARM 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GDS+DN+PG+PGIG KTA  LL +YG+LE IL + + +   +R++  LE  E 
Sbjct: 178 ADYLALVGDSVDNVPGVPGIGDKTARRLLGKYGDLEGILAHTADLTAGQRKK--LE--EN 233

Query: 240 ARLSRKLVMLRT 251
           A L+RK ++L T
Sbjct: 234 ADLARKSLILTT 245


>gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 882

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/407 (34%), Positives = 226/407 (55%), Gaps = 22/407 (5%)

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           + +ME  GI +D+ LL+Q+  +    + +   + YD  G + NLSSPKQL ++LF +L  
Sbjct: 483 LGEMEDAGIAVDEGLLEQLRQDFDGRVFAAARSAYDAIGGEVNLSSPKQLQEVLFDQLGL 542

Query: 640 PSGAKTKTGQWKTTAQDLEQINC-----------GDNPIIKNILEWRQLSKIKSTYADSL 688
           P   K K+G   T A  L  +                  + ++LE R   K++ +    L
Sbjct: 543 PPTRKMKSGH-TTNADALANLAVSIAGREDDKALAGQQFLASLLEHRDAIKLRQSVV-GL 600

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747
              +  R  R+HT +   +  TGRL+S +PNLQNI  +T  G+ IR AF+     + +++
Sbjct: 601 QRSV--RDGRIHTTFQQTAAATGRLSSTDPNLQNIHARTAEGRSIRAAFVPGEGYESIMT 658

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIE+R++A ++    L + F    D+H  VA+ ++GV  EKV+   R H K +++ 
Sbjct: 659 ADYSQIEMRLMAALSGDVELIEAFREGADLHTYVASRVYGVPEEKVTADDRSHIKAMSYG 718

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           + YG+S + L+ QLRI  ++A   +  YF RF  +  Y++      R+ GY +TI GRR 
Sbjct: 719 LAYGLSAYGLSKQLRISVAQAQALMDDYFSRFGRVRTYLDSLVQEARKEGYTQTILGRRR 778

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++NS     R   ER A+NAPIQGSAAD+ + AM++V  S+++ +  +++LLQ+HDE
Sbjct: 779 YLPDLNSTNRQAREAAERMALNAPIQGSAADVIKLAMVAVVDSMKEMR--SRVLLQVHDE 836

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LV E+   E      ++   ME A    + L VPL V I V ++W+E
Sbjct: 837 LVLEIAPGERDAVEAVVRREMENA----VELAVPLSVGIGVGSSWRE 879



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 108/290 (37%), Positives = 152/290 (52%), Gaps = 9/290 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLP-VNAIAGFCNMLWKLLQNSRKESIASHF 61
           K++ L L+DG S  +RAFYA    +   DG    NA++GF     KL+ +       +H 
Sbjct: 2   KDSTLLLIDGHSLAFRAFYALRAENFVTDGGQHTNAVSGFLTTFLKLIADYEP----THI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD P  TFR  +Y DYK  R + P     Q+ L++ +  A G+  + ++ +EADDI+
Sbjct: 58  AVAFDLPGGTFRTRMYGDYKGGRGETPAEFAGQIELIQQSLDAMGVRWLTVEDYEADDIV 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEK--IDIEHVIKKWGIPPEK 178
           AT +   E+ G  V I S DKD  QLV    T LY   + E   +D + V+ K G+ P  
Sbjct: 118 ATLSARGEESGMQVYISSGDKDAFQLVDERCTVLYPMPRSETQVLDADGVLNKTGVLPSN 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G KTAA  +  YG +E IL +A  IK K   E++   AE
Sbjct: 178 YRDLAALVGENADNIPGVPGVGPKTAAKWIAAYGGVEEILAHADEIKGKA-GESLRANAE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             RL+  L  L  D+PI   +E L     +   L +    L F  L +RV
Sbjct: 237 QVRLNMTLNELVRDLPIVEDIEELRPIGVDRNALHALFDTLGFRNLRSRV 286


>gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
 gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
          Length = 911

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/416 (34%), Positives = 242/416 (58%), Gaps = 18/416 (4%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK----FNL 623
           +Y ++D P+I+V+  +E+ GI ID++ LK  + +I K +  +E  +  +  E+    FN 
Sbjct: 499 LYLKIDYPLIEVLYDIEVQGILIDKEQLKLQTEQILKKINHIEWQMKIMVAEEIDNNFNF 558

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           SSPKQ+ ++LF KLK P+  K       TT++++ +     +PII  +LE R+ +K+ +T
Sbjct: 559 SSPKQIQELLFDKLKLPNLEKG------TTSKEVLEKLITFHPIINLLLEHRKYTKLYTT 612

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y       I     +VHT ++   T TGRL+S  PN+QNI I+ +  +++R+ FI+   K
Sbjct: 613 YLKGFEKFI-FDDNKVHTIFNHTLTNTGRLSSSYPNIQNISIRDNEQKEVRKIFITNNNK 671

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             +S DYSQIELR+LA ++K + L + F  + DIH   A  IF ++  +++ + RR AK 
Sbjct: 672 TFLSYDYSQIELRVLAQMSKESNLIKAFNQNADIHLQAAKLIFNISDNQITSEQRRIAKV 731

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            NF I+YG++ F LA  L +  ++A   IK Y+  FP + ++ EK        GY+ T+ 
Sbjct: 732 FNFGILYGLTDFGLANDLNMNVNQAKQMIKDYYSAFPSLLDFKEKQVEIATNQGYITTLS 791

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  E+NS   +IR   +R A+N PIQG+A+DI + AMIS++K +++  L  K++ Q
Sbjct: 792 NRRRYISELNSTNHNIRQFGKRIAVNTPIQGTASDILKVAMISIYKKIKEQNLDAKIVCQ 851

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLR----VPLKVNIKVSNNW 972
           IHDE++ EV   ++    +I+++ ++ A       +N++    V LKV   V   W
Sbjct: 852 IHDEIILEVDNNQLEQTKKIVINELQNALEKLFLDLNIKDQVVVKLKVGESVGKTW 907



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 154/302 (50%), Gaps = 21/302 (6%)

Query: 7   LFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +VDG+S I+RAFYAT       L +   G+  NA+  F NML  ++    +     H 
Sbjct: 5   ILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIH---QRGPYDHI 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR+++  DYKANR K P  L+ Q  +VR       I   E +  EADDI+
Sbjct: 62  LIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEADDIV 121

Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVS-PTTCL--YDTVKE-EKIDIEHVIKKWGIP 175
            +    AEK+       I+S+DKD+ QL++    CL     V E E+ID   + +KW I 
Sbjct: 122 GSICKYAEKQFDDLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEIDTNKLFEKWQIL 181

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P ++   +A+ GDS DN+ G+ GIG K A  L+Q+Y +LENI  N  ++K   + + + +
Sbjct: 182 PNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYESLENIYNNLEQLKGAIKTK-LEQ 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYD 293
             + A L + L +++TDV     LE+      D N   +  FL   E   L  R +   +
Sbjct: 241 DKQMAFLCKDLAIIKTDV----VLENFSFNKLDFNVNNIYEFLNKYEMYSLKKRFSNILN 296

Query: 294 CD 295
            D
Sbjct: 297 LD 298


>gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
 gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
          Length = 904

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/413 (36%), Positives = 233/413 (56%), Gaps = 19/413 (4%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLG 630
           L+ P+   +  ME TGI +D D L  +  E +  +     + +  +     NL SPKQL 
Sbjct: 498 LELPLARHLVAMEATGIAVDTDRLDALEGEFADQVAQATADAHAAIDDPGVNLGSPKQLQ 557

Query: 631 DILFTKLKFPSGAKTKTGQ--------WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++LF +L  P   KTKTG         W   AQ  E         ++ +L  R +++++S
Sbjct: 558 EVLFERLGLPKTKKTKTGYTTDADALVW-LRAQASEGSTA--ETFLEALLRHRDVTRLRS 614

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741
           T    L   ++    R+HT Y      TGRL+S++PNLQNIPI+T+ G++IR  F+    
Sbjct: 615 TV-QGLQKAVDA-DGRIHTTYQQTIAATGRLSSVDPNLQNIPIRTEAGRRIREVFVVGSG 672

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+SADYSQIE+RI+AH++    L + F    D+HR V +++F V  E+V+ +MR   
Sbjct: 673 FDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAGEDLHRYVGSKVFQVAPEEVTAEMRAKV 732

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +++ + YG+S F L+ QL I  +EA+  +  YF RF G+ +Y+    +  R+ GY ET
Sbjct: 733 KAMSYGLAYGLSSFGLSKQLGITPAEASALMDEYFARFGGVRDYLRAVVDEARRTGYTET 792

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           + GRR    ++ S     R + ER A+NAPIQGSAAD+ + AM+ V  +L+  +LA+++L
Sbjct: 793 MLGRRRPLPDLASTNRQRREMAERMALNAPIQGSAADVMKLAMLKVEDALDAQRLASRVL 852

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDELV EV  +E +    ++  +M  A    ++L VPL V+I    +W +
Sbjct: 853 LQVHDELVLEVAPDEGSAVEALVREAMGSA----LDLDVPLDVSIGTGRSWHD 901



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 16/307 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG S  YRAF+A P  +     G   NA+ GF +ML  +L++ +     +H AV
Sbjct: 2   TRLLLLDGHSLAYRAFFALPAENFSTATGQHTNAVYGFTSMLINVLRDEQP----THVAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y +YKA R K P+    Q+ LV+    A GI  +  +GFEADD+IAT
Sbjct: 58  AFDLSRQTFRSEEYAEYKAGRAKTPDEFAGQVSLVQEVLDAMGIAHVSKEGFEADDVIAT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPP 176
            T  A   G  V I S D+D +QLV        P   + D  +     +E   +K+G+PP
Sbjct: 118 LTTAARSAGMEVLICSGDRDALQLVDEKVTVLYPRKGVSDLARMTPTAVE---EKYGVPP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+   L AL G+S DN+PG+PG+G KTAA  L  YG+L  ++ +A  IK K   +N  ++
Sbjct: 175 ERYSDLAALVGESADNLPGVPGVGPKTAAKWLGLYGDLGGVVDHADAIKGKA-GQNFRDH 233

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +    +R+L  L TDV + + L+    +  +  ++     ALEF  L +R+      + 
Sbjct: 234 LDQVLRNRRLNQLVTDVELPLTLDAAAWDTFDREKVHEVFDALEFRVLRDRMFEYLGVEG 293

Query: 297 ANIEPVV 303
           A +   V
Sbjct: 294 AEVTEAV 300


>gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50]
          Length = 263

 Score =  253 bits (647), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 127/265 (47%), Positives = 182/265 (68%), Gaps = 4/265 (1%)

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L  
Sbjct: 1   TGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLT 60

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA 
Sbjct: 61  AFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQ 120

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAIN
Sbjct: 121 KYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAIN 180

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + 
Sbjct: 181 APMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLM 239

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
           + C     L VPL V +    NW +
Sbjct: 240 ENC---TRLDVPLLVEVGSGENWDQ 261


>gi|293571802|ref|ZP_06682818.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608056|gb|EFF37362.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 280

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 132/277 (47%), Positives = 177/277 (63%), Gaps = 6/277 (2%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELR 756
           +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+      LI S+DYSQIELR
Sbjct: 7   KVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELR 66

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPF 815
           +LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS +
Sbjct: 67  VLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDY 126

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +INS 
Sbjct: 127 GLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSR 186

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVPE+
Sbjct: 187 NYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEK 246

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           E+ +  +++   ME+A    ++L VPL  +      W
Sbjct: 247 ELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTW 279


>gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180]
 gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180]
          Length = 897

 Score =  251 bits (640), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 248/463 (53%), Gaps = 22/463 (4%)

Query: 519 EILKS--RKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERL 572
           E+LK   ++  IP +KI D + +   +E      N + +L        + E LL +   +
Sbjct: 447 EVLKEYLKEELIPHEKIKDFKTKAEKLELLSVELNALKRLCEYFEKGGLEEGLLSLARGV 506

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P + V+  ME  G +ID    K++  E    L  LE  I DL G  FNL+SPKQLG++
Sbjct: 507 ETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLGEV 566

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           L+ KL+ P     K     T  ++L +I    +P I  ILE+R+L+K+ +TY   L   +
Sbjct: 567 LYEKLELP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKLFNTYTTPLL-RL 619

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYS 751
             +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYS
Sbjct: 620 KDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYS 679

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAH ++   L + F    DIH   +  +FG   E ++ + R  AK+INF ++YG
Sbjct: 680 QIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKKKRSIAKSINFGLVYG 736

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +   +L+  L IP SEA  YI+ YF RFP I +Y+   +  + +     T+ GR   +D 
Sbjct: 737 MGSKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRAFD- 795

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
                  I+    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE
Sbjct: 796 FTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFE 854

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + E+      Q I   +     P   LRVPL+ +  V+N W E
Sbjct: 855 IEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFVANRWNE 894



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 127/254 (50%), Gaps = 17/254 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ +     
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKDKKN---M 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
                  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 62  PFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEMSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E    ++  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRRENILE 235
               Q + GDS DN  GI GIG K A  LLQ+ G+LE I  N   +K     K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLVKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVML 249
             E+A LS++L  L
Sbjct: 237 DKESAFLSKELATL 250


>gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 601

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 198/672 (29%), Positives = 314/672 (46%), Gaps = 102/672 (15%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+FD
Sbjct: 6   LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T   
Sbjct: 61  AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL 
Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLALM 180

Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           GD +DNIPG+PG+G KTA          + + Y  LE +     R   K     + E+  
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +    D   A 
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E + ++  T E K  A E        ++ SQF +                         
Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W++KL      +F   ++  DA  ++ + +         
Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGL--------- 355

Query: 419 DTSFKVET---IFIDL--SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             SF ++T    +I L  S         ++T+ K +    K   E+    K+G + K+  
Sbjct: 356 --SFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKAL----KPLLEDPDKTKVGQHAKFAI 409

Query: 474 LVL--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
            +L           GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI 
Sbjct: 410 NLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 469

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVV 580
                 +  D+I+  Q  ++A E +++ L+L  +   +L  +  L  V   ++ P++ V+
Sbjct: 470 GKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVL 529

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           + +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P
Sbjct: 530 AGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMP 589

Query: 641 SGAKTKTGQWKT 652
             +KT TGQ  T
Sbjct: 590 ILSKTATGQAST 601


>gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium]
          Length = 283

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/283 (45%), Positives = 182/283 (64%), Gaps = 3/283 (1%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYS 751
           N++T RVHT Y+ A  +TGRL+S  PNLQNIP++T+ G++IR+AF+      L ISADYS
Sbjct: 1   NRKTGRVHTSYNQAVAVTGRLSSNNPNLQNIPVRTERGREIRKAFVPRDENHLLISADYS 60

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRI+A I+    + + F+   DIH   AA+++ +    V+ +MR  AK++NF IIYG
Sbjct: 61  QIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYNIEEADVTKEMRYKAKSVNFGIIYG 120

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
              F LA  L+I RSEA + I  Y  +FP I +Y++    F +QNGYVET++GR+    +
Sbjct: 121 QGAFGLAENLKITRSEAKEIIDNYKKQFPNIQQYMDAQMKFAQQNGYVETLWGRKRWLKD 180

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           INS   ++R   ER AIN PIQG+AAD+ + AMI +H+  +D    +KM+LQ+HDELVF+
Sbjct: 181 INSGNFTVRGYAERNAINMPIQGTAADMIKLAMIKIHREFKDRGFKSKMILQVHDELVFD 240

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++E+     II+  M+ A LP  N  VP    I V  NW E
Sbjct: 241 AWKDEVDIIKPIIIECMQSA-LPLPN-DVPANAEIGVGVNWLE 281


>gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908]
          Length = 889

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 172/535 (32%), Positives = 276/535 (51%), Gaps = 37/535 (6%)

Query: 450 LSYLKKFFEN--EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHD 504
           L +L+  F    +H   IGH++K     +  +Y +S+     +D  +++++ +  +   D
Sbjct: 379 LEFLQNAFSQILQHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD 438

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKL 560
            A           KE LK  +  +  +KI D + +   +E      N + +L        
Sbjct: 439 EA----------LKEYLK--EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGG 486

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
           + E LL +   ++ P + V+  ME  G +ID   LK +  E    L  LE  I DL G  
Sbjct: 487 LEEGLLTLARDIETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD 546

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNL+SPKQLG++L+ KL  P     K     T  ++L +I    +P I  ILE+R+L+K+
Sbjct: 547 FNLNSPKQLGEVLYEKLGLP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKL 600

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            +TY   L   +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+ 
Sbjct: 601 FNTYTTPLL-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIAS 659

Query: 741 PTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
             +  L+  DYSQIELR+LAH ++   L + F    DIH   +  +FG   E ++ + R 
Sbjct: 660 SKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRS 716

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK+INF ++YG+   +L+  L IP SEA  YI+ YF RFP I +Y+   +  + +    
Sbjct: 717 IAKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKA 776

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T+ GR   +D  N     ++    R  +NA  QGSA+D+ +  M+ V +  +++  + +
Sbjct: 777 FTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVR 834

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LLQ+HDEL+FE+ E+      Q I   +     P   LRVPL+ +  V+N W E
Sbjct: 835 LLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFVANRWDE 886



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 131/254 (51%), Gaps = 17/254 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKTKPLTNNK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +EI GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E    ++  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  GI GIG K A  LLQ+ G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVML 249
             E+A LS++L  L
Sbjct: 237 DKESAFLSKELATL 250


>gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018]
          Length = 889

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 172/535 (32%), Positives = 276/535 (51%), Gaps = 37/535 (6%)

Query: 450 LSYLKKFFEN--EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHD 504
           L +L+  F    +H   IGH++K     +  +Y +S+     +D  +++++ +  +   D
Sbjct: 379 LEFLQNAFSQILQHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD 438

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKL 560
            A           KE LK  +  +  +KI D + +   +E      N + +L        
Sbjct: 439 EA----------LKEYLK--EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGG 486

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
           + E LL +   ++ P + V+  ME  G +ID   LK +  E    L  LE  I DL G  
Sbjct: 487 LEEGLLTLARDIETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD 546

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNL+SPKQLG++L+ KL  P     K     T  ++L +I    +P I  ILE+R+L+K+
Sbjct: 547 FNLNSPKQLGEVLYEKLGLP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKL 600

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            +TY   L   +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+ 
Sbjct: 601 FNTYTTPLL-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIAS 659

Query: 741 PTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
             +  L+  DYSQIELR+LAH ++   L + F    DIH   +  +FG   E ++ + R 
Sbjct: 660 SKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRS 716

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK+INF ++YG+   +L+  L IP SEA  YI+ YF RFP I +Y+   +  + +    
Sbjct: 717 IAKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKA 776

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T+ GR   +D  N     ++    R  +NA  QGSA+D+ +  M+ V +  +++  + +
Sbjct: 777 FTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVR 834

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LLQ+HDEL+FE+ E+      Q I   +     P   LRVPL+ +  V+N W E
Sbjct: 835 LLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFVANRWDE 886



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 130/254 (51%), Gaps = 17/254 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKTKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G    +I GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCGKISGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E    ++  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  GI GIG K A  LLQ+ G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVML 249
             E+A LS++L  L
Sbjct: 237 DKESAFLSKELATL 250


>gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017]
          Length = 889

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 172/535 (32%), Positives = 276/535 (51%), Gaps = 37/535 (6%)

Query: 450 LSYLKKFFEN--EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHD 504
           L +L+  F    +H   IGH++K     +  +Y +S+     +D  +++++ +  +   D
Sbjct: 379 LEFLQNAFSQILQHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD 438

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKL 560
            A           KE LK  +  +  +KI D + +   +E      N + +L        
Sbjct: 439 EA----------LKEYLK--EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGG 486

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
           + E LL +   ++ P + V+  ME  G +ID   LK +  E    L  LE  I DL G  
Sbjct: 487 LEEGLLTLARDIETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD 546

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNL+SPKQLG++L+ KL  P     K     T  ++L +I    +P I  ILE+R+L+K+
Sbjct: 547 FNLNSPKQLGEVLYEKLGLP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKL 600

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            +TY   L   +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+ 
Sbjct: 601 FNTYTTPLL-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIAS 659

Query: 741 PTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
             +  L+  DYSQIELR+LAH ++   L + F    DIH   +  +FG   E ++ + R 
Sbjct: 660 SKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRS 716

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK+INF ++YG+   +L+  L IP SEA  YI+ YF RFP I +Y+   +  + +    
Sbjct: 717 IAKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKA 776

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T+ GR   +D  N     ++    R  +NA  QGSA+D+ +  M+ V +  +++  + +
Sbjct: 777 FTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVR 834

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LLQ+HDEL+FE+ E+      Q I   +     P   LRVPL+ +  V+N W E
Sbjct: 835 LLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFVANRWDE 886



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 131/254 (51%), Gaps = 17/254 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKTKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +EI GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E    ++  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  GI GIG K A  LLQ+ G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVML 249
             E+A LS++L  L
Sbjct: 237 DKESAFLSKELATL 250


>gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 201

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/184 (64%), Positives = 143/184 (77%)

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D+LP +++  T+RVHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KL
Sbjct: 2   DALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKL 61

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ISADYSQIELR+LAH+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK IN
Sbjct: 62  ISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAIN 121

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F IIYGIS F LA QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGR
Sbjct: 122 FGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGR 181

Query: 866 RIHY 869
           RI+Y
Sbjct: 182 RINY 185


>gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d]
          Length = 827

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 163/522 (31%), Positives = 277/522 (53%), Gaps = 31/522 (5%)

Query: 460 EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIA---SIAQKWL 513
           +H   IGH++K     +  +Y +S+     +D  +++++ +  +   D      + ++W+
Sbjct: 327 QHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWI 386

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
            +   E +K  K+   ++K+    ++ +A++      +L        + E LL +   ++
Sbjct: 387 PH---EKIKDFKTKSKVEKLEQLDMELNALK------RLCEYFEKGGLEEGLLALAREVE 437

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P + V+  ME  G +ID    K++  E    L  LE  I DL G  FNL+SPKQL +IL
Sbjct: 438 TPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEIL 497

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           + KL+ P   K+++   K+  + L++     +P I  ILE+R+L+K+ +TY   L   + 
Sbjct: 498 YEKLELPQN-KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLK 550

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQ 752
            +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQ
Sbjct: 551 DKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQ 610

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELR+LAH ++   L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+
Sbjct: 611 IELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGM 667

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
              +L+  L IP +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D  
Sbjct: 668 GSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-F 726

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
                 I+    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+
Sbjct: 727 TGANDRIKGDYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEI 785

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E+      Q I   +     P   LRVPL+ +  V+N W E
Sbjct: 786 EEKNAPELQQEIQRILNNEVYP---LRVPLETSAFVANRWNE 824



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 14/238 (5%)

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+IA+   +A  
Sbjct: 14  TKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDVIAS---LATL 70

Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190
             +   I S DKD  QL+S    L+D   E     +  ++K+GI P +    Q + GDS 
Sbjct: 71  SPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQFTDYQGIVGDSS 128

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILEYAETARLSRKLV 247
           DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++  E+A LS++L 
Sbjct: 129 DNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDKESAFLSKELA 188

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
            L         ++      C  P     LK  +  K    ++T  D + +   P++LD
Sbjct: 189 TLERGC-----IKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLENSPT-PLILD 240


>gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
 gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
          Length = 889

 Score =  247 bits (630), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 158/463 (34%), Positives = 249/463 (53%), Gaps = 22/463 (4%)

Query: 519 EILKS--RKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERL 572
           E+LK   ++  IP +KI D + +   +E      N + +L        + E LL + + +
Sbjct: 439 EVLKEYLKEELIPHEKIKDFKTKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAKEI 498

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P + V+  ME  G +ID    K++  E    L  LE  I DL G  FNL+SPKQL ++
Sbjct: 499 ETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEV 558

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           L+ KL+ P     K     T  ++L +I    +P I  ILE+R+L+K+ +TY   L   +
Sbjct: 559 LYEKLELP-----KNKSHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL-RL 611

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYS 751
             +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYS
Sbjct: 612 KDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYS 671

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAH ++   L + F    DIH   +  +FG ++ K   + R  AK+INF ++YG
Sbjct: 672 QIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYG 728

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +   +L+  L I  +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D 
Sbjct: 729 MGSKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD- 787

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            N     I+    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE
Sbjct: 788 FNGVNDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFE 846

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + E+      Q I   +     P   LRVPL+ +  V+N W E
Sbjct: 847 IEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFVANRWNE 886



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 17/255 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +E  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   REGTLALIDTFAYLFRSYYMSAKNKPLTNVK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIVLFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ+ G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVMLR 250
              +A LS++L  L+
Sbjct: 237 DKGSAFLSKELATLQ 251


>gi|77920454|ref|YP_358269.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77546537|gb|ABA90099.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 480

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/285 (45%), Positives = 176/285 (61%), Gaps = 6/285 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L+L+DGSS+IYRAFY    ++   DG+P NA+ GF  ML  LLQ    E    +
Sbjct: 1   MNPSPQLYLLDGSSYIYRAFYGIRDVA-TADGMPTNAVFGFTRMLLNLLQ----EHSPDY 55

Query: 61  FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+FD P   TFR EIY +YKA+R  +P+ L PQ+P +R   QA  IPA+E  GFEADD
Sbjct: 56  LAVVFDRPREETFRREIYSEYKAHRDAMPDELAPQIPYIRQILQALNIPALEAPGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT       +G  VT+++ DKDLMQ+V     L DT+K+ +   + V +++G+PPE +
Sbjct: 116 VIATLGRRHAADGLQVTVVTGDKDLMQIVGDRIELLDTMKDTRSGAQQVFERFGVPPELV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             +  L GD+ DNIPG+PG+G KTA+ L+Q +G+LE +L   S +  KKRR N+  YAE 
Sbjct: 176 ADVLGLAGDTSDNIPGVPGVGEKTASELVQRFGSLEGVLKWTSLVNGKKRRSNLETYAEQ 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           ARLS+ L  LR DVP+ I L  L     N   LI  L+ LEF  L
Sbjct: 236 ARLSKTLATLRDDVPLEISLADLQRRKPNLAELIPLLRELEFEAL 280


>gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52]
          Length = 889

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 169/527 (32%), Positives = 274/527 (51%), Gaps = 41/527 (7%)

Query: 460 EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           +H   IGH++K     +  +Y +S+     +D  +++++ +  +   D            
Sbjct: 389 QHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD------------ 436

Query: 517 RKEILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHV 568
             E+LK   ++  IP +KI D + +  A +   + ++L  L R     EK      LL +
Sbjct: 437 --EVLKEYLKEEWIPHEKIKDFKTKSKAGKLEQLDMELNALKRLCEYFEKGGLEEGLLAL 494

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
              ++ P + V+  ME  G +ID    K++  E    L  LE  I DL G  FNL+SPKQ
Sbjct: 495 AREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKHELHVLERQILDLIGVDFNLNSPKQ 554

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           L +IL+ KL+ P   K+ +   K+  + L++     +P I  ILE+R+L+K+ +TY   L
Sbjct: 555 LSEILYEKLELPKN-KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPL 608

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747
              +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+ 
Sbjct: 609 L-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLG 667

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            DYSQIELR+LAH ++   L   F    DIH   +  +FG   E ++ + R  AK+INF 
Sbjct: 668 VDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFG 724

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+   +L+  L IP SEA  YI+ YF RFP I +Y+ + K  + +     T+ GR  
Sbjct: 725 LVYGMGSKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYR 784

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +D        I+    R  +NA  QGSA+D+ +  M+ V +  +++ L  ++LLQ+HDE
Sbjct: 785 VFD-FTGVNDHIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPL-VRLLLQVHDE 842

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+FE+ E+      Q I   +     P   LRVPL+ +  ++  W E
Sbjct: 843 LIFEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFMAKRWNE 886



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 145/313 (46%), Gaps = 27/313 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ +     
Sbjct: 5   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKDKKN---M 59

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
                  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 60  PFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEAD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 120 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 174

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 175 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 234

Query: 236 YAETARLSRKLVMLRTDV-------PITIPLEHLIL---EDCNGPRLISFLKALEFTKLI 285
              +A LS++L  L               P E+ +L   ++      IS L+ LE + LI
Sbjct: 235 DKASAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLENSPLI 294

Query: 286 NRVATTYDCDAAN 298
              A T D   A+
Sbjct: 295 VENAPTLDSAPAS 307


>gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99]
 gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I
 gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99]
          Length = 897

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 158/465 (33%), Positives = 249/465 (53%), Gaps = 24/465 (5%)

Query: 519 EILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYE 570
           E+LK   ++  IP +KI D + +  A ++  + ++L  L R     EK      LL +  
Sbjct: 445 EVLKEYLKEDLIPHEKIKDFKTKSKAEKSELLSMELNALKRLCEYFEKGGLEEDLLTLAR 504

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P + V+  ME  G +ID    K++  E    L  LE  I DL G  FNL+SPKQLG
Sbjct: 505 DIETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLIGVDFNLNSPKQLG 564

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           ++L+ KL  P     K     T  ++L +I    +P I  ILE+R+L+K+ +TY   L  
Sbjct: 565 EVLYDKLGLP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKLFNTYTTPLL- 617

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISAD 749
            +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  D
Sbjct: 618 RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVD 677

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH ++   L + F    DIH   +  +FG   E ++ + R  AK+INF ++
Sbjct: 678 YSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLV 734

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+   +L+  L IP SEA  YI+ YF RFP I +Y+   +  + +     T+ GR   +
Sbjct: 735 YGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVF 794

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
           D        ++    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+
Sbjct: 795 D-FTGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELI 852

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           FE+ E+      Q I   +     P   LRVPL+ +  ++  W E
Sbjct: 853 FEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFIAKRWNE 894



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 17/254 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVGGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVML 249
              +A LS++L  L
Sbjct: 237 DKGSAFLSKELATL 250


>gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8]
 gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8]
          Length = 893

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 247/465 (53%), Gaps = 24/465 (5%)

Query: 519 EILKS--RKSSIPIDKISDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYE 570
           E+LK   ++  IP +KI D + +  A +        N + +L        + E LL +  
Sbjct: 441 EVLKEYLKEDLIPHEKIKDFKTKSKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAR 500

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P + V+  ME  G +ID    K++  E    L  LE  I DL G  FNL+SPKQLG
Sbjct: 501 GVETPFMKVLMGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLG 560

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           ++L+ KL  P     K     T  ++L +I    +P I  ILE+R+L+K+ +TY   L  
Sbjct: 561 EVLYEKLGLP-----KNKSHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL- 613

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISAD 749
            +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  D
Sbjct: 614 RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVD 673

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH ++   L + F    DIH   +  +FG   E ++ + R  AK+INF ++
Sbjct: 674 YSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLV 730

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+   +L+  L IP +EA  YI+ YF RFP I +Y+   K  + +     T+ GR   +
Sbjct: 731 YGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEILKTSKAFTLLGRYRVF 790

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
           D  N     ++    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+
Sbjct: 791 D-FNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELI 848

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           FE+ E+      Q I   +     P   LRVPL+ +  ++  W E
Sbjct: 849 FEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFIAKRWNE 890



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 17/254 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVML 249
              +A LS++L  L
Sbjct: 237 DKGSAFLSKELATL 250


>gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75]
          Length = 893

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 158/465 (33%), Positives = 248/465 (53%), Gaps = 24/465 (5%)

Query: 519 EILKS--RKSSIPIDKISDSQVQ------EHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
           E+LK   ++  IP +KI D +++      E      N + +L        + E LL + +
Sbjct: 441 EVLKEYLKEEWIPHEKIKDFKIKSKVEKLEQLDMELNALKRLCEYFEKGGLEENLLSLAK 500

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P + V+  ME  G +ID    K++  E    L  LE  I +L G  FNL+SPKQLG
Sbjct: 501 EVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLG 560

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           +IL+ KLK P     K     T  ++L +I    +P I  ILE+R+L+K+ +TY   L  
Sbjct: 561 EILYEKLKLP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKLFNTYTTPLL- 613

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISAD 749
            +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  D
Sbjct: 614 RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVD 673

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH ++   L + F    DIH   +  +FG ++ K   + R  AK+INF ++
Sbjct: 674 YSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLV 730

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+   +L+  L I  +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +
Sbjct: 731 YGMGSKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF 790

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
           D        I+    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+
Sbjct: 791 D-FTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELI 848

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           FE+ E+      Q I   +     P   LRVPL+ +  V+  W E
Sbjct: 849 FEIEEKNALELQQEIQRILNDEVYP---LRVPLETSAFVAKRWNE 890



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 127/254 (50%), Gaps = 17/254 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + ++ 
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIH 236

Query: 236 YAETARLSRKLVML 249
              +A LS++L  L
Sbjct: 237 DKASAFLSKELATL 250


>gi|309801255|ref|ZP_07695384.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222144|gb|EFO78427.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 727

 Score =  244 bits (623), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 199/757 (26%), Positives = 340/757 (44%), Gaps = 85/757 (11%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++     +    H AV FD
Sbjct: 1   MVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDTEHPD----HLAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN + P YK  R   PE LL QLPL++    A G+  IE  G+E DD+I T   
Sbjct: 57  VKGGTFRNMMLPQYKGTRDAAPEDLLSQLPLIQRMLSALGVTYIEQPGYEGDDVIGTLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKMV 180
           + +K G+   ++S D+D  QL++   T LY        D++H     V++K+ + PE+  
Sbjct: 117 MGDKAGYRTLVLSGDRDAFQLINDNITVLYP--GHHFKDLKHMTSDAVVEKYHVTPEQYP 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYA 237
            L AL G++ DNIPG+PG+G   AA  + +YG L+ I+ +A  I  KK    RENI    
Sbjct: 175 DLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDQIIEHADEITGKKGEALRENI---- 230

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDA 296
           E  +L+R +  L  D+ + + L+ L     +  RL      LEF  +  NRV  T++   
Sbjct: 231 EQVKLNRSVNALVRDLELDVTLDDLTFGTVDTARLNDLFSKLEFGIRTRNRVLKTFNA-- 288

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                       T   G+ ++ E +R    +    +   +  + +++   P    L    
Sbjct: 289 -----------GTTTAGVTVQPESNRVVLPEVMTITHGDELRTWVDANMPPADEHLHGDD 337

Query: 357 KLSQYPINNDSYTKIVNTKDI-----QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           + +   I  D+ + I NT          WV + E +       +   M   + K   I  
Sbjct: 338 EDANPAI--DAGSLIGNTMTCTNAVNHSWVLQAEGVAKPGNASMASLMLMVNGKGAQI-- 393

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +  DD+                            I + L+   +  H   + H  K 
Sbjct: 394 ---EHVDDS----------------------------IANELQHMLDGYHRSMVVHGYKE 422

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSRKSSIP 529
            + +L   GI++     D  L  Y++     +  +   A  +L  +  ++  ++ + ++ 
Sbjct: 423 QQHLLESVGITLPTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLD 482

Query: 530 IDKI-SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITG 587
           +D +   S  Q   ++    I+ +   +   L+ ++    + + ++ P+  V+  ME  G
Sbjct: 483 LDDMDGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAG 542

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            Q+D   L ++  + + +    +E  ++ +GE+ NL SPKQL  ILF  +      KTK+
Sbjct: 543 AQVDMIRLTEMRDQFAADARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKS 602

Query: 648 GQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           G + T A  L+ +      N   N  +  +L  R+ +K+K     +L +  N R  R+HT
Sbjct: 603 GSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQ-IVQTLIDATNPRDGRIHT 661

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
            +      TGRL+S++PNLQNIP +   G++IR AF+
Sbjct: 662 TFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRSAFV 698


>gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
 gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
          Length = 891

 Score =  243 bits (621), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 169/539 (31%), Positives = 279/539 (51%), Gaps = 43/539 (7%)

Query: 450 LSYLKKFFEN--EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHD 504
           L +L+  F    +H   IGH++K     +  +Y +S+     +D  +++++ +  +   D
Sbjct: 379 LEFLQNAFSQILQHAQIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD 438

Query: 505 IASIAQKWLSYTRKEILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                         E+LK   ++  IP +KI D + +  A +   +  +L  L R     
Sbjct: 439 --------------EVLKEYLKEEWIPHEKIKDFKTKSKAEKLEQLDRELHALKRLCEYF 484

Query: 563 EK------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           EK      LL +   ++ P + V+  ME  G +ID    K++  E    L  LE  I +L
Sbjct: 485 EKGGLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILEL 544

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G  FNL+SPKQL +IL+ KL+ P   K+++   K+  + L++     +P I  ILE+R+
Sbjct: 545 IGADFNLNSPKQLSEILYEKLELPQN-KSRSTDEKSLLKILDK-----HPSIALILEYRE 598

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L+K+ +TY   L   +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ 
Sbjct: 599 LNKLFNTYTTPLL-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKG 657

Query: 737 FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           FI+   +  L+  DYSQIELR+LAH ++   L   F    DIH   +  +FG   E ++ 
Sbjct: 658 FIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAK 714

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + R  AK+INF ++YG+   +L+  L IP +EA  YI+ YF RFP I +Y+ + K  + +
Sbjct: 715 EKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILK 774

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                T+ GR   +D        I+    R  +NA  QGSA+D+ +  M+ V +  +++ 
Sbjct: 775 TSKAFTLLGRYRVFD-FTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP 833

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++LLQ+HDEL+FE+ E+      Q I   +     P   LRVPL+ +  ++  W E
Sbjct: 834 -SVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEVYP---LRVPLETSAFIAKRWNE 888



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 23/310 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ +     
Sbjct: 5   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKDKKN---M 59

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
                  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 60  PFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 120 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 174

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 175 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E+A LS++L  L         ++      C  P     LK  +  K    ++T  D +
Sbjct: 235 DKESAFLSKELATLERGC-----IKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLE 289

Query: 296 AANIEPVVLD 305
            +   P++LD
Sbjct: 290 NSPT-PLILD 298


>gi|222055465|ref|YP_002537827.1| Ribonuclease H [Geobacter sp. FRC-32]
 gi|221564754|gb|ACM20726.1| Ribonuclease H [Geobacter sp. FRC-32]
          Length = 480

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/285 (44%), Positives = 179/285 (62%), Gaps = 6/285 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L+L+DGSS+IYRA+Y    L+    G+P NA+ GF  ML  LLQ +R +    +
Sbjct: 1   MNQPPQLYLLDGSSYIYRAYYGIRDLA-TSGGMPTNAVFGFTRMLLTLLQENRPD----Y 55

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+FD P   TFR EIYP YKA+R  +PE L+PQ+P +R   QA  IPA+E  GFEADD
Sbjct: 56  VAVVFDPPREDTFRREIYPPYKAHRDAMPEDLVPQIPYIRKMVQALNIPALEAPGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT       EG  VT+++ DKDL+Q+V     L DT+ E +   E V+ ++G+ PE++
Sbjct: 116 VIATLARRFAAEGIQVTVVTGDKDLLQIVGEGIGLLDTMNERRSGTEEVLDRFGVTPEQV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             +  L GD+ DNIPG+PGIG KTAA L++++G+LE +L   S +  K RREN+   A+ 
Sbjct: 176 ADVLGLAGDTADNIPGVPGIGEKTAAKLVRQFGSLEGVLEWKSLVSGKARRENLHACADQ 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           ARLS++L  +R DVP+ + L  L     + P L+  L+ L F  L
Sbjct: 236 ARLSKRLATVRYDVPLQVSLVDLQRRTPDLPVLVPLLRELGFAAL 280


>gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 886

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/356 (40%), Positives = 215/356 (60%), Gaps = 8/356 (2%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN++S KQL +ILF K   P   KTK G   T    L+++    + + K IL++R + KI
Sbjct: 533 FNINSSKQLQNILFKKFNLPKIYKTKLGNISTNEIVLKKL-SKIHILPKIILQFRLIKKI 591

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            +TY  +L   IN +T R+HT Y+  +T TGRL+S  PNLQNIPIKT +G+K+R AFI+ 
Sbjct: 592 INTYLRNLIKSINNKTNRIHTTYNQINTSTGRLSSKNPNLQNIPIKTKIGRKLRIAFITK 651

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
               L++ADYS IELRI+AH +K   L +    + DIH   A+ IF   +EK+    R  
Sbjct: 652 KKWLLLTADYSHIELRIIAHYSKDKNLIKDLLKNKDIHISTASHIFNKPLEKIKKYHRNI 711

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AKTINFSI+YGISPF L+ +L I   ++ + I RYF ++  I  +I+ T    ++ GY++
Sbjct: 712 AKTINFSILYGISPFGLSKKLNISIKKSKNLIYRYFLKYNKIKRFIKNTYKTAKKRGYIK 771

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--T 918
           T+F R+++   INS    ++N  +R  IN  IQ +A+DI +++MI++H  L   K     
Sbjct: 772 TLFKRKLYIPNINSKNIYLKNSAKRFCINLMIQNTASDIIKKSMITLH-HLFKKKFPKDI 830

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           K+++QIHDEL+FE+ E++      +I   ME        L +PL +  K+  NW+E
Sbjct: 831 KIIMQIHDELIFEIKEKKKDKIIDVIKKIMENNT----KLIIPLYITTKIGKNWKE 882



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DG   +Y+ +++   L  K +G     + G+  +L KL++    + I     ++FD
Sbjct: 5   IIIIDGHYCLYQNYFSFIKLKNK-NGSSTGVLYGYIRLLNKLIEKFNPKKII----IVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  T R++++  YK NR  +P  L  Q+  ++   +A  I  I I+  EADDII T + 
Sbjct: 60  TPKKTNRHKLFTKYKKNRISMPNELKKQINPLKKIIKALNITIISIKKIEADDIIGTISR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           I  K+ + + I S DKD+ QL+     +     ++ ++   + KK+G+ P+ +     L 
Sbjct: 120 IFTKKKYYIFIYSADKDMTQLIKKNVFVIPGSIKKVLNKNDIFKKYGVYPKSIADFLCLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
           GD  DNI G+ GIG KTA +LLQ + +++ I  N  +I
Sbjct: 180 GDFSDNIRGVLGIGKKTAKILLQSFSSIKKIYKNIEKI 217


>gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 474

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 246/463 (53%), Gaps = 22/463 (4%)

Query: 519 EILKS--RKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERL 572
           E+LK   ++  IP +KI D + +   +E      N + +L        + E LL +   +
Sbjct: 24  EVLKEYLKEELIPHEKIKDFKAKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAREV 83

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P + V+  ME  G +ID    K +  E    L  LE  I DL G  FNL+SPKQL ++
Sbjct: 84  ETPFVKVLMGMEFQGFKIDAPYFKCLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEV 143

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           L+ KL  P   K+ +   K+  + L++     +P I  ILE+R+L+K+ +TY   L   +
Sbjct: 144 LYEKLGLPKN-KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RL 196

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYS 751
             +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYS
Sbjct: 197 KDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYS 256

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAH ++   L + F    DIH   +  +FG ++ K   + R  AK+INF ++YG
Sbjct: 257 QIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYG 313

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +   +L+  L I  +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D 
Sbjct: 314 MGSKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD- 372

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
                  I+    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE
Sbjct: 373 FTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFE 431

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + E+      Q I   +     P   LRVPL+ +  V+  W E
Sbjct: 432 IEEKNALELQQEIQRILNDEVYP---LRVPLETSAFVAKRWNE 471


>gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
 gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
          Length = 887

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 275/539 (51%), Gaps = 43/539 (7%)

Query: 450 LSYLKKFFEN--EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHD 504
           L +L+  F    +H   IGH++K     +  +Y +S+     +D  +++++ +  +   D
Sbjct: 375 LEFLQNAFSKMLQHACIIGHDLKPLLSFLKAKYQVSLENIHIQDTQILAFLKNPEKVGFD 434

Query: 505 IASIAQKWLSYTRKEILKS--RKSSIPIDKISDSQVQEHA--IENSNVIL----QLWLLL 556
                         E+LK   ++  I  +KI D + +  A  +E  NV L    +L    
Sbjct: 435 --------------EVLKEYLKEDLILHEKIKDFKTKSKAEKLERLNVELNALKRLCEYF 480

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
             + + E LL + + ++ P + V+  ME  G +ID    K++  E    L  LE  I DL
Sbjct: 481 EKEGLEEDLLSLAKEIEMPFMKVLMNMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDL 540

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            GE FNL+SPKQL  +L+ KL  P     K     T  ++L +I    +P I  ILE+R+
Sbjct: 541 IGEDFNLNSPKQLSGVLYEKLNLP-----KNKSHSTDEKNLLKI-MDKHPSIPLILEYRE 594

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L+K+ +TY   L   +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ 
Sbjct: 595 LNKLSNTYITPLL-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSSKGLLIRKG 653

Query: 737 FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           FIS   +  L+  DYSQIELR+LAH ++   L + F    DIH   +  +FG N  K   
Sbjct: 654 FISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSRALFGENSAK--- 710

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + R  AK+INF ++YG+   +L+  L IP +EA  YI+ YF RFP I +Y+   +  + +
Sbjct: 711 EKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNNMQEEILK 770

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                T+ GR   +D  N     ++    R  +NA  QGSA+D+ +  M+ V +  ++  
Sbjct: 771 TSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNDS 829

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + ++LLQ+HDEL+FE+ E+      Q I   +         LRVPL+ +  ++  W +
Sbjct: 830 -SVRLLLQVHDELIFEIEEKNALELQQEIQRILNNEVYA---LRVPLETSAFIAKRWND 884



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 131/258 (50%), Gaps = 17/258 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKTKPLTNDK--GFPTGLLMGLVGMIKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R+E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRSEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL++    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLNDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ+ G+LE I  N   A  +   K  + ++ 
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQQLGSLEKIYNNLDLAKNLLSPKMYQALIH 236

Query: 236 YAETARLSRKLVMLRTDV 253
             E+A LS++L  L  + 
Sbjct: 237 DKESAFLSKELATLEREC 254


>gi|219110613|ref|XP_002177058.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411593|gb|EEC51521.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 389

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 181/296 (61%), Gaps = 14/296 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L LVD S++I+RA+Y+ P + R  DG+P  A+ GFC+M+ +L+ N   E       ++
Sbjct: 59  DPLILVDASAYIFRAYYSMPPIHR-SDGMPTGAVMGFCSMIMRLILNRIVEGERPRLVLV 117

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+ +YP+YK NRP  P  L+PQ  LVR A +A+GIP IE   FEADD+IAT 
Sbjct: 118 FDAKGKTFRHSLYPEYKGNRPDAPVDLVPQFALVREAAKAYGIPQIEAATFEADDVIATL 177

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-----PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
             +A +EG    I+S DKDL QL++     P+  + D +   +I  + V++KWG  P  +
Sbjct: 178 ATMAIEEGIDTNILSGDKDLWQLITDREEIPSVHMIDPMTMGRITYDEVVEKWGCGPRLL 237

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GDS DN+PG+PGIG K AALL++E+G+LE +L N   +KQ+ RRE +    + 
Sbjct: 238 GDILALAGDSADNVPGVPGIGPKIAALLIEEFGSLEKLLANVDTVKQRARREKLKANEQQ 297

Query: 240 ARLSRKLVMLRTDVP---ITIP-----LEHLILEDCNGPRLISFLKALEFTKLINR 287
           ARLSR LV LR DVP   +T P     +  L + + +  R+++F  A+ F  L  R
Sbjct: 298 ARLSRVLVDLRRDVPMDRMTFPQGIAKVSDLQMAEFDSNRILAFYDAMGFRDLKRR 353


>gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 481

 Score =  241 bits (614), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 163/520 (31%), Positives = 260/520 (50%), Gaps = 58/520 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P  +  +  +P NAI G  NM+  ++    ++  +   AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +            
Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTE---------- 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                +LD  T    GI     +  D   KT   SS++  T+  ++   P+         
Sbjct: 291 -----LLDGGT----GI-----VTADEQTKT---SSVTVSTAATHAAAIPES-------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ + + + 
Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHS 474


>gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7]
          Length = 885

 Score =  240 bits (613), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 164/527 (31%), Positives = 273/527 (51%), Gaps = 41/527 (7%)

Query: 460 EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           +H   IGH++K     +  +Y +S+     +D  +++++ +  +   D            
Sbjct: 385 QHASIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD------------ 432

Query: 517 RKEILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHV 568
             E+LK   ++  IP +KI D +    A +   + ++L  L R     EK      LL +
Sbjct: 433 --EVLKEYLKEELIPHEKIKDFKTTSKAEKLERLDMELNALKRLCAYFEKGGLEEGLLAL 490

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
              ++ P + V+  ME  G +ID    K++  E    L  LE  I +L G  FNL+SPKQ
Sbjct: 491 AREVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKDELKVLERQILELIGVDFNLNSPKQ 550

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           L ++L+ KL+ P   K+ +   K+  + L++     +P I  ILE+R+L+K+ +TY   L
Sbjct: 551 LSEVLYEKLELPKN-KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPL 604

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747
              +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+ 
Sbjct: 605 L-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLG 663

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            DYSQIELR+LAH ++   L + F    DIH   +  +FG  + K   + R  AK+INF 
Sbjct: 664 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGELAK---EKRSIAKSINFG 720

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+   +L+  L IP +EA  YI+ YF RFP I +Y+ + K  + +     T+ GR  
Sbjct: 721 LVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYR 780

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +D        ++    R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDE
Sbjct: 781 VFD-FTGANDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDE 838

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+FE+ E+      Q I   +     P   LRVPL+ +  ++  W E
Sbjct: 839 LIFEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFMAKRWNE 882



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 129/254 (50%), Gaps = 17/254 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTHIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVML 249
             E+A LS++L  L
Sbjct: 237 DKESAFLSKELATL 250


>gi|154247529|ref|YP_001418487.1| 5'-3' exonuclease [Xanthobacter autotrophicus Py2]
 gi|154161614|gb|ABS68830.1| 5'-3' exonuclease [Xanthobacter autotrophicus Py2]
          Length = 299

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 125/291 (42%), Positives = 182/291 (62%), Gaps = 3/291 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +Q ++H+ L+DGSSF++RAFY  P + R+ DG PV AI+GFC M+W LL  +     ASH
Sbjct: 6   IQADDHVLLIDGSSFLWRAFYGAPAVIRRSDGHPVGAISGFCWMMWTLLHETSAVPPASH 65

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD     +R++I   YKANR + P+ +  Q   VR A  A  IP++E+ G+EADD+
Sbjct: 66  RAVIFDAGRRNWRHDILASYKANRNEPPDDIKRQFKPVRAACAALPIPSVELAGYEADDL 125

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--CLYDTVKEEKIDIEHVIKKWGIPPEK 178
           IATYT  A   G  VTI + DKDL QLV   T  CLYD  K   +    V++++G+PP  
Sbjct: 126 IATYTRKAVASGAGVTIATGDKDLAQLVDDRTGVCLYDASKGRTMREAEVLERFGVPPAG 185

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L AL GD+ DNIPG+PGIG K AA L+  +G+LE+I I A   +++K+   + ++A 
Sbjct: 186 VLDLLALAGDTTDNIPGVPGIGAKRAAELVSRHGSLEDI-IAAGTARKEKQAAKVADHAA 244

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +AR+SR L  L T VP+ + L HL  ++ +     +FL+  +   L  R++
Sbjct: 245 SARISRSLATLDTAVPVPLALAHLGAQEPDMAAFAAFLEEWDLGGLAERLS 295


>gi|148263291|ref|YP_001229997.1| ribonuclease H [Geobacter uraniireducens Rf4]
 gi|146396791|gb|ABQ25424.1| Ribonuclease H [Geobacter uraniireducens Rf4]
          Length = 484

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 126/285 (44%), Positives = 179/285 (62%), Gaps = 6/285 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L+++DGSS+IYRA+Y    L+    G+P NA+ GF  ML  LLQ +R +    +
Sbjct: 1   MNAAPQLYVLDGSSYIYRAYYGVRDLA-TSGGMPTNAVFGFTRMLLGLLQENRPD----Y 55

Query: 61  FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+ D P   TFR E+YP YKA+R  +P  L+PQLP +R   QA  IPA+E  GFEADD
Sbjct: 56  LAVVLDPPREETFRRELYPAYKAHRDAMPADLVPQLPYIRQILQALNIPALEAPGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT       EG  VT+++ DKDL+Q+V     L DT+K+ +   + V+ ++G+PPE +
Sbjct: 116 VIATLARRYAAEGIEVTVVTGDKDLLQIVGDGINLLDTMKDLRSGPQEVLDRFGVPPELV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             +  L GD+ DNIPG+PGIG KTAA L++ +G+LE +L   S +  K+RREN+  +A+ 
Sbjct: 176 PDVLGLAGDTSDNIPGVPGIGEKTAAELVRRFGSLEGVLQWKSLVNGKQRRENLHAHADQ 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           ARLS+ L  +R DVP+ + L  L     N P L+  L+ LEF+ L
Sbjct: 236 ARLSKTLATVRYDVPLDLSLAELERRTPNLPELMPLLRELEFSAL 280


>gi|224003183|ref|XP_002291263.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
 gi|220973039|gb|EED91370.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
          Length = 500

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 256/456 (56%), Gaps = 31/456 (6%)

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           AI N   +  L+ L+  +LI   LL   E ++ P+  +++ ME  G+    + LK+  A+
Sbjct: 45  AINNLAFLNALYPLMNRQLIDRDLLPSLENIEAPVQSILAAMECRGVAFYPNHLKRNEAQ 104

Query: 602 ISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFT--KLKFPSGAKTKTGQWKTTAQDLE 658
            ++ + +LE     ++ +  F LSSP+Q+ + L+   K+K PSG   KT   ++T+++  
Sbjct: 105 ANERIEALEAQARTITNDSSFLLSSPQQISNYLYDILKMKVPSGLVQKTKSQRSTSEETL 164

Query: 659 QI-----NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           Q      N   +PII  ILE+R L+K+ +TY   LP       QR+H  +S  +  TGRL
Sbjct: 165 QALKAASNGSPHPIIDVILEFRTLNKLLTTYIKPLPTFC--LPQRIHPQWSECAVRTGRL 222

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKK----LISADYSQIELRILAHIAKITPLYQ 769
           +  +PNLQ +P   D G  +RR+F+  P+KK    L + DYSQ E+RILAH++    L  
Sbjct: 223 SCRQPNLQQVP--KDDGASVRRSFV--PSKKETMCLFACDYSQKEVRILAHMSGDKALIS 278

Query: 770 VFE--NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           +F+   ++DI++ +++ I    +E ++ Q R   K +  +++YG+SP ++A +L I +S+
Sbjct: 279 LFQMDANVDIYKQMSSLIRNKPVESITAQERAQFKQVTLALLYGMSPNQVAKKLNITKSQ 338

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A   +  +F RF G+  ++E TK F R+N YV TI GRR + D I+S  +  +   ER A
Sbjct: 339 AIQMMNDFFRRFQGVKNWMEDTKEFARRNHYVVTIAGRRRYLDGIDSDDNGAKAQAERQA 398

Query: 888 INAPIQGSAADITRRAMISVHKSL----EDHKLAT-----KMLLQIHDELVFEVP--EEE 936
           IN  IQGSAAD+ + +MI++ ++L    ED+         ++LLQIHDELV E+   E +
Sbjct: 399 INTVIQGSAADLMKCSMINIAENLQRWQEDNSSNGTSSRPRILLQIHDELVLELNFVETD 458

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           I     I   S+ + C    +L+VPL +      +W
Sbjct: 459 IRRLQAIATKSLTRDCEEYFHLKVPLLLTCSCGMSW 494


>gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 297

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 187/300 (62%), Gaps = 9/300 (3%)

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           +L +I  T  D+    IN R  R+HT ++     TGRL+S++PNLQNIP +   G+ IR 
Sbjct: 3   KLRQIVQTLMDA----INPRDGRIHTTFTQTVAATGRLSSVDPNLQNIPNRNATGRDIRS 58

Query: 736 AFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           AF+       L+SADYSQ+ELRI+A ++    L + F++  D HR VA+ ++G+ +++V+
Sbjct: 59  AFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVT 118

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           P  R H K +++ + YG+S + L+ QL IP  EAA    RYF  F  +H+Y+E   +  R
Sbjct: 119 PDQRNHVKAMSYGLAYGLSTYGLSQQLGIPSKEAAALRSRYFQTFGKVHDYLESLVSNAR 178

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
             GY +T+FGRR ++  + S     R+  ER A+NAPIQG+AADI + AMI V ++L D 
Sbjct: 179 NTGYTQTMFGRRRYFPALTSANRVARDAAERGALNAPIQGTAADIMKIAMIRVDRALRDG 238

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            L ++++LQIHDELV E+   E    ++++  +ME A    +N+ VPL V+  V ++WQ+
Sbjct: 239 NLNSRIVLQIHDELVVELAPGEEKRVTELVRDAMEHA----VNIAVPLDVSTGVGSDWQQ 294


>gi|315452575|ref|YP_004072845.1| DNA polymerase I [Helicobacter felis ATCC 49179]
 gi|315131627|emb|CBY82255.1| DNA polymerase I [Helicobacter felis ATCC 49179]
          Length = 861

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 168/527 (31%), Positives = 279/527 (52%), Gaps = 48/527 (9%)

Query: 465 IGHNIKYDKLVLH---RYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
           +G+ IK  +L L+   RY + +   +ED+ L++++ +S        S+  +  +  R   
Sbjct: 362 VGYQIK--ELFLYFKQRYQLDLPTHYEDVALLAWLHNS--------SLEPQMSALGRLFS 411

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           L+S  SS P   ++ +Q++     N+ +I + +   +  L  + LL +   L+ P++ ++
Sbjct: 412 LESF-SSKPHAPLNAAQMES----NTRLIARAYTHYKDTLSPD-LLQLARELEYPLLAIL 465

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
            +M+  G  +D    + +  E +++L +L+  I+ L+    N++S KQ    L+  L   
Sbjct: 466 LEMQAQGFSLDLAYFQTLKQEFAQSLNTLQNQIHALAHTDINVNSTKQWAHFLYQDLGLQ 525

Query: 641 SGA--KTKTG---------QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           +    K KTG           + T Q           ++  +L +R+L K++STY +  P
Sbjct: 526 AKGVKKIKTGFSTDEASLKALQETYQGARVQGVEVATLLDALLGYRELFKLQSTYVE--P 583

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISA 748
                +  ++HT +   +T + RL+S  PNLQNIPI+T LG+KI   FI S P   L+ A
Sbjct: 584 LLTQNQHGKIHTIFYQHTTASSRLSSAHPNLQNIPIRTPLGKKIAHGFIPSAPDLLLLGA 643

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR+LAH +  T L Q F  + DIH   A  +F        P  R  AK+INF++
Sbjct: 644 DYSQIELRLLAHFSNDTHLIQAFLQNQDIHLNTALALFN------DPHKRHAAKSINFAL 697

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+ P RLA  L+I + EA DYI RYF+ FP I +++++ K  + Q G + T+ G + H
Sbjct: 698 IYGMGPRRLADTLKISQQEAKDYIDRYFNAFPTIKDFLDQLKARILQEGKITTLLGHQRH 757

Query: 869 YDEINS-PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +D  N+ PK     +  R  IN   QGSA+D+ + AM+ +H  +  +    KML+Q+HDE
Sbjct: 758 FDFTNATPKLQAEYL--REGINTLFQGSASDLVKLAMLKIHAHIAKYP-RVKMLVQVHDE 814

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++ EVP+ +++  +  I   ME    P   L+VPL+ +     NW E
Sbjct: 815 IILEVPKTQVSQIALEIKTIME-GIYP---LKVPLECHTSYGANWGE 857



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 23/233 (9%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI-AEKE 131
           R  + P YK+NR   P  L  QLP++    +A G+ +  + G+E+DD+IA+  ++  E E
Sbjct: 68  RKTLCPTYKSNRTS-PPGLEEQLPIIFEWIEAMGLDSFSMPGYESDDVIASLCHVFPEAE 126

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
              V I+S DKD  QLVSP   L D        IE  ++K+GI P + +  Q L GDS D
Sbjct: 127 ---VRILSVDKDFFQLVSPRVLLCDPSSNTLKGIEECLEKYGIYPHQFIEYQGLVGDSSD 183

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR----RENILEYAETARLSRK 245
              G+ G+G      L+Q +  LEN+   +  + I   K     +  +L   E A LSR+
Sbjct: 184 GYKGVEGVGPIYGTKLIQAFSTLENLYYALETTSITNPKLPAKIQHALLRDKEQAFLSRR 243

Query: 246 LVMLRTDV---PITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           L  L + +   P T+   P E+ +L      R+   L+  E   L+ ++  TY
Sbjct: 244 LAKLESGLFNHPPTLKPFPQENPLL------RIADALEHYEMFALLKQITPTY 290


>gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158]
 gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158]
          Length = 248

 Score =  235 bits (600), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 116/250 (46%), Positives = 162/250 (64%), Gaps = 4/250 (1%)

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           ++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  AAE
Sbjct: 1   MRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAE 60

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+ +
Sbjct: 61  VFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAQ 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + +M
Sbjct: 121 YMENTRASAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSM 180

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I+V + L   KLA++M++Q+HDELV EVP++E+    + +   M         L+VPL  
Sbjct: 181 IAVDQWLTRDKLASRMIMQVHDELVLEVPDDELPLVREKLPEMMCGVA----KLKVPLVA 236

Query: 965 NIKVSNNWQE 974
            +    NW+E
Sbjct: 237 EVGAGANWEE 246


>gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
 gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
          Length = 383

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/393 (35%), Positives = 216/393 (54%), Gaps = 16/393 (4%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G +ID    K++  E    L  LE  I DL G  FNL+SPKQLG++L+ KL  P  
Sbjct: 3   MEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLP-- 60

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
              K     T  ++L +I    +P I  ILE+R+L+K+ +TY   L   +  +  ++HT 
Sbjct: 61  ---KNKSHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTT 115

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHI 761
           +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DYSQIELR+LAH 
Sbjct: 116 FIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHF 175

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L + F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L
Sbjct: 176 SQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETL 232

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            IP +EA  YI+ YF RFP I +Y+   K  + +     T+ GR   +D  N     ++ 
Sbjct: 233 NIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEILKTSKAFTLLGRYRVFD-FNGVNDYVKG 291

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
              R  +NA  QGSA+D+ +  M+ V +  +++  + ++LLQ+HDEL+FE+ E+      
Sbjct: 292 NYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQ 350

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q I   +     P   LRVPL+ +  ++  W E
Sbjct: 351 QEIQRILNDEVYP---LRVPLETSAFIAKRWNE 380


>gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 478

 Score =  233 bits (595), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 157/519 (30%), Positives = 250/519 (48%), Gaps = 63/519 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQP----THAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +       T D +A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRW------TADVEAG 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       + KG     +      I  S     S+  + ++ E             
Sbjct: 295 ---------KWLQAKGAKPAAKPQETVVIDESP----SEPAAALSYE------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++  
Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKH 468


>gi|253699464|ref|YP_003020653.1| 5'-3' exonuclease [Geobacter sp. M21]
 gi|251774314|gb|ACT16895.1| 5'-3' exonuclease [Geobacter sp. M21]
          Length = 474

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 129/290 (44%), Positives = 177/290 (61%), Gaps = 16/290 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFY-----ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+    L+L+DGSS+IYRA+Y     ATP       G+P NA+ GF  ML  LLQ  R E
Sbjct: 1   MEISPRLYLLDGSSYIYRAYYGFRDIATP------GGMPANAVFGFTKMLLDLLQEHRPE 54

Query: 56  SIASHFAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +FAV+FD P   TFR EIYP+YKA R   PE L+ QLP +R   QA  IP +E   
Sbjct: 55  ----YFAVVFDPPRENTFRREIYPEYKAQRDAAPEDLVSQLPYIRKILQALNIPILETSR 110

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
           FEADD+IAT       EG  VT+++ DKDL+Q+V+    L DT+K ++   + V++++G+
Sbjct: 111 FEADDVIATLATRFAAEGTDVTVVTGDKDLLQIVTGRISLLDTMKGKRSGPQQVVERFGV 170

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           PPE +  +  L GDS DNIPG+PGIG K AA L+Q++G+LE +L   S +  K RREN+ 
Sbjct: 171 PPELVADVLGLAGDSGDNIPGVPGIGEKIAAKLVQQFGSLEKVLEWRSLVNGKTRRENLK 230

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +A+ A LS++L  +R D P+ + L  L     N   L+S L+ L F  L
Sbjct: 231 THAKQAILSKELATVRYDAPVDVSLAELQSRPANVADLVSLLRELGFAAL 280


>gi|197117169|ref|YP_002137596.1| ribonuclease H [Geobacter bemidjiensis Bem]
 gi|197086529|gb|ACH37800.1| ribonuclease H [Geobacter bemidjiensis Bem]
          Length = 474

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 129/290 (44%), Positives = 176/290 (60%), Gaps = 16/290 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFY-----ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+    L+L+DGSS+IYRA+Y     ATP       G+P NAI GF  ML  LLQ  R E
Sbjct: 1   MEISPRLYLLDGSSYIYRAYYGFRDIATP------GGMPANAIFGFTKMLLDLLQEHRPE 54

Query: 56  SIASHFAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +FAV+FD P   TFR E+YPDYKA R  +PE L+ QLP +R   Q   IP +E   
Sbjct: 55  ----YFAVVFDPPRENTFRREMYPDYKAQRDAMPEDLVSQLPYLRKILQTLNIPILEASR 110

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
           FEADD+IAT       EG  VT+++ DKDL+Q+V+    L DT+K ++   + V++++G+
Sbjct: 111 FEADDVIATLAARFAAEGADVTVVTGDKDLLQIVTDRIALLDTMKGKRSGPQQVVERFGV 170

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           PPE +  +  L GDS DNIPG+PGIG K AA L+Q++G+LE +L   S +  K RREN+ 
Sbjct: 171 PPELVADVLGLAGDSGDNIPGVPGIGEKIAAKLVQQFGSLEKVLEWRSLVNGKSRRENLK 230

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +AE A LS+ L  +R D P+ + L  L     +   L+S L+ L F  L
Sbjct: 231 THAEQAILSKALATVRYDAPVDVSLAELQSRPASVQELVSLLRELGFAAL 280


>gi|255600737|ref|XP_002537523.1| DNA polymerase I, putative [Ricinus communis]
 gi|223516044|gb|EEF24860.1| DNA polymerase I, putative [Ricinus communis]
          Length = 176

 Score =  230 bits (587), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/176 (61%), Positives = 136/176 (77%), Gaps = 3/176 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL ++R  S+   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLTSARDTSVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR +I+P+YKANR   PE L+PQ  L+R AT+AF +P IE  GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKDIFPEYKANRSAPPEELIPQFGLIREATRAFNLPCIETDGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           DDIIATY   AE  G  VTIIS+DKDLMQLV+P   +YD++K+++I I  VI+KWG
Sbjct: 121 DDIIATYARQAEAAGADVTIISSDKDLMQLVTPMVHMYDSMKDKQIGIPDVIEKWG 176


>gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 261

 Score =  230 bits (587), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 115/263 (43%), Positives = 162/263 (61%), Gaps = 4/263 (1%)

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ D G++IR+ FI  P+ K  SADYSQIELRI+AH++    + + F
Sbjct: 1   RLSSSDPNLQNIPVRDDDGKEIRKCFIPEPSCKFFSADYSQIELRIMAHLSCDENMMEAF 60

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  A++I+   +++V+   R+ AK  NF IIYGI+ + LA ++ I   EA   
Sbjct: 61  REGFDIHRATASKIWKEAMDEVTDSQRKQAKQANFGIIYGITTYGLAQRMGIDNGEARQL 120

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  FP + EY+EK K   R+ GY ET+FGRR +  +INS   ++R   ER AINAP
Sbjct: 121 IDDYFTTFPKVKEYMEKAKEIARERGYAETLFGRRRYLPDINSKNGTVRGFAERNAINAP 180

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGS ADI + AMI + K  +   + ++M+LQ+HDEL F V  +E     +I++  M+ A
Sbjct: 181 IQGSEADIIKLAMIRIWKRFKKEGIRSRMILQVHDELNFSVYPDEAEKVEKIVLEEMQGA 240

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL       +NW E
Sbjct: 241 ----YPLHVPLIAEAGWGDNWLE 259


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 176/636 (27%), Positives = 309/636 (48%), Gaps = 100/636 (15%)

Query: 411 ISTLDQKDDTSFKVETIFIDLS-------------------VHTSQDSTGKNTLTKEILS 451
           ++ L Q+D+ +   ET  +D+                    +  +    G+    + +L+
Sbjct: 131 VTDLQQEDEIAVDTETTGLDVYNDVIVGLSFTLPKADYHVYIPVAHKVAGQQLSRRAVLT 190

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
            LK    + +  KI HN KYD  +L R+G+ +RG + D M+   VL+    +  + ++A 
Sbjct: 191 ALKPILTDVNIGKILHNSKYDIHMLIRHGLRLRGIKHDTMIAMAVLNENEPTLALKNLAT 250

Query: 511 KW--------LSYTRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL- 560
           K+         SYT +E+  K+  + IP+D         +A +++++  +L+   R  L 
Sbjct: 251 KYGKYFGFEDKSYTYEELFGKTSFAEIPLDA-----ALVYAAKDTHLTYELYKWQRQHLN 305

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
             E L  +Y+ L+ P+IDV   ME  G  ID D   +  AE+   +  LE N+ +  G+ 
Sbjct: 306 QKESLRLIYDELENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEIAGLEANLTEHFGD- 364

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSK 679
            N +SP QL  +L+ KLK P     K  +  T  + L+++ +   +  I  +L++R+L+K
Sbjct: 365 INFNSPLQLAAVLYDKLKLPV---IKGKERSTDVKTLKKLRDETKHEGIDVLLKYRELTK 421

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +  TY ++LP  I K+   +H  ++  +T+TGR AS EPNLQN+P +       RR  ++
Sbjct: 422 LLGTYVEALPQLI-KKDGLLHGSFNQVATVTGRFASREPNLQNLPPRA------RRLIVA 474

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--PQM 797
           P    ++  D+SQIE R+LAH++    L + +    D++  +A+ +F V+ E+     + 
Sbjct: 475 PEDSLILGVDFSQIEPRVLAHMSGDPHLQEPYLKGQDLYSTLASRVFKVSYEECGDDSKY 534

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R+  K    +++YG S + LA QL I   EA  +I+ +F  +P ++ +I  T  F +QN 
Sbjct: 535 RKMMKVGLLAVMYGTSMWTLADQLGITVEEANQFIEDFFATYPDVYAFICATHEFAKQNE 594

Query: 858 YVETIFGRR----------IHYDEINSPKSSIRNIN------------------------ 883
           YVET++GR+          I YD++ +    I                            
Sbjct: 595 YVETLYGRKRRFPGHREKAIVYDKLATEICEILGTKAVPYDYWQYKKELPVILRRQFRAV 654

Query: 884 -------ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
                   R A+NA IQG+AADI +RA+I+++          K++  +HDE +  +  + 
Sbjct: 655 KGEVERVRRMAVNARIQGTAADIMKRALINLYND------GRKIIGTVHDEALL-IVNKN 707

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           IT A    V  +E   +   NL VP++V+ ++S  W
Sbjct: 708 ITLAE---VEKIEACMIRSANLNVPIRVDTELSTRW 740


>gi|307199388|gb|EFN80013.1| DNA polymerase theta [Harpegnathos saltator]
          Length = 1937

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 138/438 (31%), Positives = 233/438 (53%), Gaps = 48/438 (10%)

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            LLH +  ++  +  +++ ME++GI ++   L++  + I   + SLE   YDL+G KFNLS
Sbjct: 1510 LLHTFRDIEMRIATILACMELSGIGVNLKALQETLSVILSEMQSLETRAYDLAGRKFNLS 1569

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            S K++G +L            K  +  T+   LE+    DNPI + ++ WR+L+  K+  
Sbjct: 1570 SSKEVGQVL---------GLYKDKKVSTSKAVLEKC---DNPISRLVISWRKLNATKTKI 1617

Query: 685  ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-----TDLGQKIRRAFIS 739
               L N +++   R+H    +  T+TGR++  EPNLQN+P        +L   +RR+F+ 
Sbjct: 1618 VYPLLN-LSQEDSRIHG-NCITCTVTGRVSMHEPNLQNVPKDFHFEDNNLLVSVRRSFVP 1675

Query: 740  PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                 ++SADY Q+ELR+L H ++ + L ++ +   DI + +AA+   V  E+V+ +MR+
Sbjct: 1676 ALGNVMLSADYCQLELRLLTHFSQDSVLCEIMKQQGDIFKSIAAKWNNVIEEEVTNEMRQ 1735

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
              K + + +IYG+    LA  L I  +EA  +++ + + +PGI+++++ T      NGYV
Sbjct: 1736 RTKQLCYGMIYGMGVKSLAENLCISETEAQHFLESFMNAYPGIYKWLDDTLEKAHHNGYV 1795

Query: 860  ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH----- 914
             T+ GRR    ++ S KSS R   ER A+N  +QGSAADI ++AMI + + +        
Sbjct: 1796 TTLLGRRRQLPDLRSTKSSTRAQAERQAVNTKVQGSAADIVKKAMIIIEEKMRHSFPDSV 1855

Query: 915  --------------------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
                                +    ++LQ+HDEL++EV   ++   + II  SME  C  
Sbjct: 1856 IVFPETQGTRKLRRNSRDMLQRGGYLVLQLHDELLYEVNSADLKEVAIIIKESMEDVC-- 1913

Query: 955  KINLRVPLKVNIKVSNNW 972
               L VPL V ++V   W
Sbjct: 1914 --QLTVPLPVKVRVGPAW 1929


>gi|196005441|ref|XP_002112587.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
 gi|190584628|gb|EDV24697.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
          Length = 1492

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 168/575 (29%), Positives = 287/575 (49%), Gaps = 58/575 (10%)

Query: 425  ETIFIDLS-VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GIS 482
            ++ F++L   +T QD    N              EN   +KI +N+K    +L R+  + 
Sbjct: 943  DSYFVNLGDCNTLQDDVANN-------------IENSSAIKIAYNLKEQYKILTRHLQVE 989

Query: 483  MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK------SRKSSIPIDKISD 535
            ++G   D  +  ++LD         +I   +L+     +L       +  + I +   S 
Sbjct: 990  IKGTSYDPKIGIWLLDQDAHEKTFHAIISNYLA-DEAALLDCVIGTCTDGNGIGLHYNSQ 1048

Query: 536  SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +  +  A   S ++ +L  ++   L   +L  +Y  ++ P I  +  +E+ GI    D  
Sbjct: 1049 TSGRRRACIESVLVHKLHSVVEAMLKERELYKLYSEIEMPTIRTLCWLELDGIGFCMDEC 1108

Query: 596  KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            +Q    +   L  +EE  Y ++G  F L+SP  +  +L+T+L             K   Q
Sbjct: 1109 QQQIERLQYRLHYIEEMAYRIAGRSFQLTSPTDIAHVLYTELN----------TCKDVLQ 1158

Query: 656  DLEQINCGDNPIIKNILEWRQLSK--IKSTYA-DSLPNHINK-RTQRVHTFYSLASTMTG 711
             L QI+    P+   +LEWR+++    K+ Y       + +K +T RV+    +  T TG
Sbjct: 1159 KLSQIH----PLPALVLEWRRINSALTKTLYPLKRYSKYCHKSKTYRVYPTCQM-HTATG 1213

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQ 769
            R++  +PNLQNIP   D+ + +R   I   T    L+SADYSQ+ELR++AH+++   L +
Sbjct: 1214 RISISDPNLQNIPKDFDIAKMVRMRNIIGCTNDTILLSADYSQLELRLIAHLSEDKQLSR 1273

Query: 770  VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            V  +  D+ + +A+E   +  + VS + R+ AK + + IIYG++P  L  Q+++P  +AA
Sbjct: 1274 VLNDGGDVFKAIASEWLCIPTDHVSDEQRQRAKQMCYGIIYGMTPMALGEQMKVPEEQAA 1333

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             ++  +  R+ GI ++IEKT    R+ GYV TI  R+     I S  + +R+  ER AIN
Sbjct: 1334 TFMHTFKSRYNGIAKFIEKTLVSCRREGYVSTIMNRKRLLPNIRSTNARLRSHAERQAIN 1393

Query: 890  APIQGSAADITRRAMISVHKSLED----------HKLATKMLLQIHDELVFEVPEEEITT 939
              +QGSAAD+ + AMI++HK +++           +   K +LQ+HDEL+FE+   E+ +
Sbjct: 1394 TTVQGSAADLVKIAMINIHKRIDEMCANRANRDNAEWKPKFVLQMHDELLFEIKANELES 1453

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             S I+   ME A    + LRV L+V IK    W E
Sbjct: 1454 VSLIVKQEMENA----LKLRVKLEVKIKTGKYWGE 1484


>gi|240142580|ref|YP_002967093.1| hypothetical protein MexAM1_META2p0958 [Methylobacterium extorquens
           AM1]
 gi|240012527|gb|ACS43752.1| Hypothetical protein MexAM1_META2p0958 [Methylobacterium extorquens
           AM1]
          Length = 729

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/321 (39%), Positives = 183/321 (57%), Gaps = 23/321 (7%)

Query: 1   MQKENH-------LFLVDGSSFIYRAFY----ATPLLS-RKHDGLPVNAIAGFCNMLWKL 48
           M++EN        + LVDGS F++R ++      P  + R  DG P  AI  FC  L   
Sbjct: 1   MERENAPVGPGDVVALVDGSFFMHRTYHLAASGDPARNLRPSDGFPNGAIRKFCERLLGF 60

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIP 108
           L+     +  SH  + FD+   + R+E++P YKANRP+ P  L    PL R A +AFG  
Sbjct: 61  LEAGFGGTRPSHLGIFFDHSRRSHRSELFPGYKANRPEPPADLEALKPLFRDAVRAFGYG 120

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---------TVK 159
            IE + +EADD+IATY   A   G  V ++ +DKDL+QLV PT   +D           +
Sbjct: 121 CIEAENYEADDLIATYATAASARGAHVLMVGSDKDLLQLVGPTVFAFDFEYGVPGRSGYR 180

Query: 160 EEKI-DIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
             ++ D   V   W G PPE++  + AL GD  DN+PG+PGIG KTAA L+ EYG+LE +
Sbjct: 181 PARLFDAAAVAAAWEGTPPERLGDVLALMGDQTDNVPGVPGIGMKTAAKLVAEYGDLETL 240

Query: 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           L NA  IKQ  RR+ +L +AETARLSR+LV L  + P+ +PL+ L+L   +   L  F+ 
Sbjct: 241 LANADAIKQPGRRDALLAHAETARLSRRLVELERNAPMPVPLDDLLLGWPDPDVLFPFVN 300

Query: 278 ALEFTKLINRVATTYDCDAAN 298
           A+EF+ L  ++   Y  +A++
Sbjct: 301 AMEFSWLGRKLGQLYQVEASS 321


>gi|118579386|ref|YP_900636.1| ribonuclease H [Pelobacter propionicus DSM 2379]
 gi|118502096|gb|ABK98578.1| ribonuclease H [Pelobacter propionicus DSM 2379]
          Length = 482

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 118/264 (44%), Positives = 164/264 (62%), Gaps = 6/264 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L+L+DGSS+IYRA+Y     +    G+P NA+ GF  ML  LLQ +R +    +
Sbjct: 1   MNAAPRLYLLDGSSYIYRAYYGVRDCA-TSVGMPTNAVFGFTRMLLSLLQENRPD----Y 55

Query: 61  FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+FD P   TFR +IYP YKA+R  +P  L  QLP +R   QA  IPA+E  GFEADD
Sbjct: 56  LAVVFDPPREGTFRRQIYPPYKAHRDDMPTDLAAQLPYIRQVVQALNIPALEAPGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT    +  EG  VT+++ DKDL+Q+V     L DT+K  +     V+ ++G+PPE +
Sbjct: 116 VIATLARRSADEGARVTVVTGDKDLLQIVGERIGLLDTMKGLRSGPREVLDRFGVPPELV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             +  L GDS DNIPG+PGIG KTAA L++ +G+LE +L   S +  ++RREN+  Y + 
Sbjct: 176 PDVLGLAGDSSDNIPGVPGIGEKTAAELVRRFGSLEGVLRWKSLVNGRQRRENLSAYGDQ 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLI 263
           ARLS+ L  +R DVP+ + L  L 
Sbjct: 236 ARLSKTLATVRYDVPLELSLADLC 259


>gi|332019330|gb|EGI59836.1| Helicase POLQ-like protein [Acromyrmex echinatior]
          Length = 2176

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 236/439 (53%), Gaps = 45/439 (10%)

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            LL+ +  ++  ++  ++ ME++GI ++   L+++S+ +S  + SLE   YDL+G KFN S
Sbjct: 1752 LLYTFREVEMRIMTTLACMELSGIGVNLKSLQELSSVVSNEMQSLETKAYDLAGRKFNFS 1811

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            S K++G +L            K  +  T+   LE+    DNPI   ++ WR+L+  K+  
Sbjct: 1812 SSKEVGQVL---------GLYKDKKVSTSKTVLEKC---DNPISTLVISWRKLNATKTKM 1859

Query: 685  ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-----IKTDLGQKIRRAFIS 739
               L N + +   RV     +  T+TGR++  EPNLQN+P        +L   +R AF+ 
Sbjct: 1860 IYPLLN-LAQGDSRVRG-NCITCTVTGRVSMHEPNLQNVPKDFSFADNNLVVSVRMAFVP 1917

Query: 740  PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                 ++SADY Q+ELR+L H ++ + L ++ + S DI + +AA+   V  E+V+ +MR+
Sbjct: 1918 VLGNIMLSADYCQLELRLLTHFSQDSILCKIMKQSGDIFKNIAAKWNNVAEEQVTNEMRQ 1977

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
              K + + +IYG+    LA  L I   EA ++++ +   +PGI++++         +GYV
Sbjct: 1978 RTKQLCYGMIYGMGVKSLAENLCISEPEAQEFLESFMSAYPGIYKWLNDILEEAHHDGYV 2037

Query: 860  ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE------- 912
             T+ GRR  + +++S KSS+R   ER ++N  +QGSAADI ++AMIS+   +        
Sbjct: 2038 TTLLGRRREFPDLSSTKSSVRAQAERQSVNTKVQGSAADIVKKAMISIEDKIRCYFPDSA 2097

Query: 913  --------DHKLATK-------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
                      KL +        ++LQ+HDEL++EV   ++   + II  SME  C     
Sbjct: 2098 IIFPEVHASRKLRSNLQQRGGYLVLQLHDELLYEVNLADLKKFAAIIRESMENVC----Q 2153

Query: 958  LRVPLKVNIKVSNNWQEEN 976
            L VPL V I+V   W + N
Sbjct: 2154 LTVPLPVKIRVGPAWGDLN 2172


>gi|195113811|ref|XP_002001461.1| GI21961 [Drosophila mojavensis]
 gi|193918055|gb|EDW16922.1| GI21961 [Drosophila mojavensis]
          Length = 2181

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/426 (33%), Positives = 228/426 (53%), Gaps = 32/426 (7%)

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +LL  +  L+ P+   +  ME  G    +  L+++  ++   +  LE  IY+L G +FNL
Sbjct: 1767 QLLKFFRELEMPIQMSLCHMECIGFPAKEHSLQRLFQQMMATMKRLESKIYELHGSRFNL 1826

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             S + +  +L    K         G+  T+ Q LE+I   D+PI + IL +R+LS + + 
Sbjct: 1827 GSTQAVAKVLGLHRK-------ANGRVSTSRQILEKI---DSPISQLILNYRKLSMLLAK 1876

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--IKTDLGQK-----IRRA 736
                L      +  RVH   S+  T TGR++  EPNLQN+      +LG++      R A
Sbjct: 1877 SMQPLLKCC--QANRVHG-QSITYTATGRISMSEPNLQNVAKDFHIELGKEQLKISCRSA 1933

Query: 737  FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F     K+ LISAD+ Q+E+RILAH+++   L QV  ++ D+   +AA    ++   VS 
Sbjct: 1934 FAPMDEKRCLISADFCQLEMRILAHLSQDKALLQVMNSTQDLFTAIAAHWNKIDESNVSE 1993

Query: 796  QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            Q+R   K I + I+YG+    L+  L+    EA    +++   +PGI  Y  K   F R 
Sbjct: 1994 QLRNGTKQICYGIVYGMGMRSLSEALKCTEQEAQMITEQFHLAYPGIKAYTMKVVKFARN 2053

Query: 856  NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH- 914
            NGYVETI GRR + D INS +  ++   ER AIN+ IQGSAADI + A++ + K+L  + 
Sbjct: 2054 NGYVETITGRRRYLDHINSGEVQLKTQAERQAINSTIQGSAADIAKSAILRMEKNLGRYR 2113

Query: 915  ------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
                  K A  ++L +HDEL+FEVP ++    ++++  +ME      + L VPL+V +K+
Sbjct: 2114 EKLGLAKNAVNLVLHLHDELIFEVPTDKAKKVAKVLSLTMENC----VKLNVPLRVKLKI 2169

Query: 969  SNNWQE 974
              +W E
Sbjct: 2170 GRSWGE 2175


>gi|223999787|ref|XP_002289566.1| hypothetical protein THAPSDRAFT_262348 [Thalassiosira pseudonana
           CCMP1335]
 gi|220974774|gb|EED93103.1| hypothetical protein THAPSDRAFT_262348 [Thalassiosira pseudonana
           CCMP1335]
          Length = 249

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 114/249 (45%), Positives = 161/249 (64%), Gaps = 1/249 (0%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D S++I+R+++A P L R  DG P  A+ G C ML  LL +   +       + FD
Sbjct: 1   LLLIDASAYIFRSYHAIPPLHRS-DGTPTGALHGVCRMLQNLLLSRLLKGDRPRVVLAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +    FR+EIYP+YKANR   PE L+PQ  LVR A +AFGI  +E +G+EADD+IAT   
Sbjct: 60  FKGPNFRHEIYPEYKANRGPCPEDLVPQFELVREAAEAFGIVQVEAEGYEADDVIATLAR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A +EG  V I+S DKDLMQL++P   + D+   +++  + V++KW +   K+  + AL 
Sbjct: 120 QALEEGVDVDILSGDKDLMQLITPPVHMIDSTHFDRVTHDDVVEKWNVDSAKLGDVLALA 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPG+PGIG K AA+L+ EYG+L  ++  A  IKQKKRRE+++E AE   L R+L
Sbjct: 180 GDSSDNIPGVPGIGPKIAAMLINEYGSLSELISQAENIKQKKRRESLIENAEKVILFRQL 239

Query: 247 VMLRTDVPI 255
           V L   +P+
Sbjct: 240 VTLNETIPV 248


>gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium]
          Length = 557

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 175/566 (30%), Positives = 278/566 (49%), Gaps = 67/566 (11%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + IYRA+YA   +P ++ K  G   NA  GF + L  L+   +     +H AV
Sbjct: 5   LFLLDAMALIYRAYYALIRSPRITSK--GRNTNAQFGFTSTLIDLINKEK----PTHLAV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A T R+  + +YKANR   PE L+  LP ++    AF IP +E+ G+EADD+I T
Sbjct: 59  CFDTEAATERHTDFAEYKANRQAAPEDLISALPDIKKIITAFNIPVVELDGYEADDVIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-----YDTVKEEKIDIEHVIKKWGIPP-E 177
             + A  +G+ V +++ DKD  QL+           Y   KE+ +D + + +KWGI   +
Sbjct: 119 LAWQAADKGYEVFMVTPDKDYGQLLIHNNVFIYKPPYQGGKEDILDAKKICEKWGIERVD 178

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V +  L GD++DNIPGI GIG KTA  LL+E+ NLENIL NA  IK     E I    
Sbjct: 179 QVVDMLGLMGDAVDNIPGIAGIGEKTACKLLKEFDNLENILANADNIK-GAVGEKIRNGK 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA----TTYD 293
           E A +S+KL  + TDVP+    E   L++ N P L      LEF  L  R+     + +D
Sbjct: 238 EAALMSKKLARIITDVPVQFHEEDYRLKEWNQPELKELFNELEFKALGKRLLGDDFSVFD 297

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
             A N  P    ++     G A+E              S  +++ +   +++T + + L 
Sbjct: 298 -KAGNATPANGQMDMF---GTAVE--------------SKSTEENANSETDETTETVGLT 339

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             + L   P    +YT I   + I+Q V +L      SF   T    A   + + ++   
Sbjct: 340 ADKNLGNTP---HTYTLIDTEEKIKQLVAELMAQDEISFDTETTGTYAHDVELVGLSF-- 394

Query: 414 LDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                   +K  E  +I      ++        T+ +L + K  F++     IG N+KYD
Sbjct: 395 -------CYKTGEGYYIPCPPSANE--------TQALLQHFKPLFDDASKKWIGQNVKYD 439

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT----RKEILKSRKS 526
            +VL  YG+ + G F D ML  Y+++  GR   D   ++ ++L Y      + I K  K+
Sbjct: 440 LIVLKWYGVLLAGQFFDTMLAHYLIEPEGRRGMDY--LSAQYLQYEPVHIEELIGKKGKN 497

Query: 527 SIPIDKISDSQVQEHAIENSNVILQL 552
            + +  +   +++E+A E++++ LQL
Sbjct: 498 QLTMKDVELEKIKEYAAEDADITLQL 523


>gi|328782961|ref|XP_001120279.2| PREDICTED: DNA polymerase theta [Apis mellifera]
          Length = 1864

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 144/440 (32%), Positives = 230/440 (52%), Gaps = 53/440 (12%)

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            LL+ ++ ++  +I +++ ME+TG+ +    L+ +S+ I + ++SLEE  Y L G+KFN S
Sbjct: 1437 LLYTFKDIEMKIIILLAYMELTGLGVCLKSLQDLSSVIREEMISLEERAYALCGKKFNFS 1496

Query: 625  SPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            S K++G+IL   K K  S  K   GQ              D+PI   ++ WR+L+  KS 
Sbjct: 1497 SSKEVGEILGLYKGKKISVNKAVLGQ-------------SDHPISNLVMSWRKLNVTKSK 1543

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK-------IRRA 736
                L N + + + R+H    + ST+TGR++  EPNLQN+P   D   K       +R A
Sbjct: 1544 IIYPLLN-LAQHSSRIHG-NCVTSTLTGRISMHEPNLQNVP--RDFNSKDNSFTISVRMA 1599

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            FI      ++SADY Q+ELRILAH +K T L  +     DI + +AA+   V+  +V  +
Sbjct: 1600 FIPTVGNIILSADYCQLELRILAHFSKDTILCNIMRKPGDIFKNIAAKWNHVSENEVDDK 1659

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            MRRH K + + +IYG+    LA  L +   +A ++++ + + +PGI +++       R N
Sbjct: 1660 MRRHTKQLCYGMIYGMGVKTLAENLSVDEVKAKEFLESFMNAYPGISKWLNNVLEEARIN 1719

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            GY+ TI  RR  +  + S     ++  ER A+N  +QGSAADI ++AMI + K +     
Sbjct: 1720 GYITTILERRRMFPGLTSINPMEKSQAERQAVNTKVQGSAADIVKKAMIDIEKRMRFEFS 1779

Query: 912  -------------------EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
                               E       ++LQ+HDEL++EV   ++   + I+  SME+ C
Sbjct: 1780 TSLPIMPANSSRKLRSNSKETQHKGGYLVLQLHDELLYEVNIYDLRQVATIVKESMEQVC 1839

Query: 953  LPKINLRVPLKVNIKVSNNW 972
                 L VPL V +KV   W
Sbjct: 1840 ----QLTVPLPVKLKVGPTW 1855


>gi|23007000|ref|ZP_00049062.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 552

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/403 (34%), Positives = 212/403 (52%), Gaps = 43/403 (10%)

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
           + +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E++ +E
Sbjct: 86  MPTHLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELERYE 145

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIE 166
           +DD+I+TY   AE  G  V I+S+DKDLMQLVS     YD             E  +D E
Sbjct: 146 SDDLISTYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDRE 205

Query: 167 HVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
            +I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+L+ +L  A  IK
Sbjct: 206 AIIAKWEGLSPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLDQLLERAGDIK 265

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           Q KRRE +L   + ARLSR+LV L  +VP+ +PL+ L +   +  +L+ FLKA+EF  L 
Sbjct: 266 QPKRRETLLANIDQARLSRRLVALEENVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLT 325

Query: 286 NRVATT--YDCDAANIEPVVLD-----INTTENKG------IAIETEIDRDTTIKTSQ-- 330
            R+A     D +A   +P +L        T    G         +  +D +T     +  
Sbjct: 326 RRIAQMLHVDPEAVKPDPALLPGAQPHAYTNAAGGSDAVPFFGDDVPVDPETAAAPERKD 385

Query: 331 ------------FSSLS--DQTSKIN--SEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
                       F+ L   DQ  K     E TP  L   R  +  + P +  +Y  I   
Sbjct: 386 GAAPPEGGEVDPFADLDLPDQAPKKRGPGEPTPSALVAARAAEAVK-PFDTGAYETISTV 444

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             ++ W+ +    G  +    TD +DA  +  + ++++T+  +
Sbjct: 445 AQLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATVPGR 487


>gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 751

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 161/594 (27%), Positives = 296/594 (49%), Gaps = 82/594 (13%)

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSY 494
           + ++ G       +L+ LK++  +    K+ HN K+D  +L R+G+ MRG   D M+   
Sbjct: 174 AHNNAGPQLRRSYVLNGLKRYLTDPTVGKVLHNAKFDIHMLLRHGMRMRGLAHDTMIAMK 233

Query: 495 VLDSGRSSHDIASIAQKWL--------SYTRKEIL-KSRKSSIPIDKISDSQVQEHAIEN 545
           +L+    S  + ++A ++         S+T +++  K+  + +P+D         +A ++
Sbjct: 234 ILNENEPSVALKNLATRYGKFFGFDGESHTFEDLFGKACFADVPLD-----MALIYAAKD 288

Query: 546 SNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           +++  +L+      L   E LL +Y  L+ P++D+  +ME TG  +D    ++   E+  
Sbjct: 289 THLTWELYKWQMEHLTKREDLLKLYRELENPLVDICVEMEQTGFAVDTAFAQEYGEELKG 348

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-- 662
            L  +E+ +    GE  N +SP QL ++L+ +L  P G +  T        D++ +    
Sbjct: 349 ELAEVEKTLVAHFGE-INFNSPAQLAEVLYDRLGLPQGKERST--------DVKTLKGLK 399

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           G +P I+ +L++R+L+K+  TY ++LP+ + K   R+H  ++  +T+TGR AS EPNLQN
Sbjct: 400 GRHPGIEPLLKYRELTKLLGTYVEALPHQL-KADGRIHGSFNQVATVTGRFASREPNLQN 458

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           +P +       RR  ++P    L+  D+SQIE RILAH++      + +    D++  +A
Sbjct: 459 LPPRA------RRLIVAPKGWLLLGIDFSQIEPRILAHMSGDPHFREPYLKGEDLYSTLA 512

Query: 783 AEIFGVNIEKVS--PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           A +F V + +     + R+  K    +++YG S F L+ QL I   EA  +I+ ++  +P
Sbjct: 513 ARVFKVPLSECGDGSKYRKMMKIGLLAVMYGTSMFTLSEQLGISVEEAHRFIEGFYDEYP 572

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRR----------IHYDEINS---------------- 874
            ++ +I+ T  FV++N YV T++GR+          I YD++ +                
Sbjct: 573 DVYAFIKDTWEFVKKNEYVATLYGRKRRFPGHREQAIVYDQLAAKICKALGTERVPLDFW 632

Query: 875 -----PKSSIRNIN---------ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
                PK   R             R A+NA IQG+AADI +RA++++++         K+
Sbjct: 633 SNKGIPKDLKRKFGAVKGEVERVRRMAVNARIQGTAADIMKRALLNLYEYTRAR--GWKI 690

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +HDE +  V  + IT A    V  +E   +    L VP+KV+ ++   W +
Sbjct: 691 NGTVHDEALLLV-RDTITLAE---VEELEACMVRAAELEVPVKVDTEIMARWGD 740


>gi|298706211|emb|CBJ29252.1| DNA polymerase [Ectocarpus siliculosus]
          Length = 1219

 Score =  221 bits (562), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 144/465 (30%), Positives = 236/465 (50%), Gaps = 57/465 (12%)

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN-IYDLSGEKFN 622
            K+L   E+++ P I V++ ME++G+    + + + S  +  +L  L+   +  + G  FN
Sbjct: 739  KMLAACEQVEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVKAVGGRDFN 798

Query: 623  LSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
            L+SP Q+ D+LF  LK PS   K  +    T+A+ LE +  G + ++  ILE+R ++K K
Sbjct: 799  LASPDQVADVLFKHLKLPSPPVKAGSVHASTSAEVLEGLQ-GKHAVVAPILEFRGVNKYK 857

Query: 682  STYADSLPNHI--------------NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            +TY D L                       R+H  ++  S  TGRL+   PNLQ +P  +
Sbjct: 858  TTYVDKLAERALGAAAAESAVPASQGAGAARIHATWNQTSARTGRLSCSRPNLQQMPKGS 917

Query: 728  DL-----GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE---------- 772
            D      G  +R AF +  +  L++ADYSQIE+R+LA   +   L  +F           
Sbjct: 918  DPLAGVEGVNVRDAFSATRSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGA 977

Query: 773  --NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                 D++R +AA++F      VS + R  AK +   I YG+   ++A +L I  S+A  
Sbjct: 978  STGGGDVYRKLAAQVFAKEEHGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQG 1037

Query: 831  YIKRYFHRFPGIHEYIEKT-------------KNFVRQNGYVETIFGRRIHYDEINSPK- 876
             ++ +   FPGI  ++  T             + F R+NGYV T+ GRR H  EIN+ + 
Sbjct: 1038 LVRSFLKAFPGIEPFMAATRRYGTPCRHQISQRRFARENGYVCTLTGRRRHLPEINNSRN 1097

Query: 877  SSIRNINERAAINAPIQGSAADITRRAMISVHKSLE------DHKL-ATKMLLQIHDELV 929
            ++ +   ER A+N+ +QG+AADI + AM+ V + L+      D  L   ++++QIHDELV
Sbjct: 1098 AAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLDCPRLIMQIHDELV 1157

Query: 930  FEVP--EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             E P  EE++     ++   ME      + ++ PL VN+ V  +W
Sbjct: 1158 LECPACEEDLERLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSW 1202


>gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 317

 Score =  221 bits (562), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 113/277 (40%), Positives = 168/277 (60%), Gaps = 5/277 (1%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756
           R+HT +      TGRL+S++PNLQNIP +T  GQKIR AF+   P   L++ADYSQIE+R
Sbjct: 41  RIHTTFGQTVAATGRLSSIDPNLQNIPARTVDGQKIREAFVPQKPYAALMTADYSQIEMR 100

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH++    L   F +  D+HR VAA ++GV  ++V+P  R H K  ++ + YG+S + 
Sbjct: 101 IMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYGLSAYG 160

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL I + +A   +  YF RF  + EY+ +      + GY ET+ GRR +  E+ S  
Sbjct: 161 LAAQLNISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYTETMRGRRRYLPELRSTN 220

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            ++ +   RAA+NAPIQGSAAD+ + AM+ V   L   +L +++LLQ+HDELV EV   E
Sbjct: 221 RNVADNARRAALNAPIQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGE 280

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                 ++  +M         LRVPL+V++ +  NW+
Sbjct: 281 TERLETLVRQAMTGVA----KLRVPLEVSVGIGPNWR 313


>gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 814

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/405 (31%), Positives = 228/405 (56%), Gaps = 7/405 (1%)

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537
           G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E  + ++ S+  D  +D++
Sbjct: 393 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 452

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +  I  +  ++ L   L  +L       +   ++ P+  V+++ME  GI +D  +L +
Sbjct: 453 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 512

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + ++    +    E  Y + G++ NL SPKQL  +LF +L  P   +TKTG + T A  L
Sbjct: 513 LQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 571

Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + + +   +P ++++L  R ++++K T  D L   +     R+HT ++     TGRL+S 
Sbjct: 572 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 629

Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+TD G++IR AF+      +L++ADYSQIE+RI+AH++    L + F    
Sbjct: 630 EPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 689

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +  Y
Sbjct: 690 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 749

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           F RF G+ +Y+       R++GY  T+ GRR +  E++S    +R
Sbjct: 750 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVR 794



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 159/301 (52%), Gaps = 13/301 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG+S  +RAFYA P  + K   GL  NA+ GF  ML  LL    ++   +H A  FD
Sbjct: 1   MLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IAT   
Sbjct: 57  VSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVCL 182
            AE EG+ V +++ D+D +QLVS   T LY    V E  +   E V++K+G+ P +    
Sbjct: 117 QAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++ K         A   R 
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR- 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +R+L  L  DVP+    + L L+  +   +      LEF  L +R+   +D  AA   P 
Sbjct: 236 NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGPE 292

Query: 303 V 303
           V
Sbjct: 293 V 293


>gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 176/622 (28%), Positives = 305/622 (49%), Gaps = 47/622 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MDSSNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV     
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRVLKKEV 293

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                       + T ++    +    +    I+   F++ +      N     +K  LE
Sbjct: 294 SGNGITSTPKSKVATGKSAPSPLPLFPEEGGGIQGDLFANFTP-----NEPNEAKKSNLE 348

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L+  S+      +Y  I   K  ++ +QKL T    S    T   +   ++ + ++ S 
Sbjct: 349 TLESQSR------NYQLIDTEKKRREIIQKLLTSKILSLDTETTETEPMDAELVGMSFSI 402

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         E  ++   V + +D   K      I+   +  FENE+ LK+G NIKYD 
Sbjct: 403 AEN--------EAFYV--PVPSDRDEALK------IVKEFRPVFENENSLKVGQNIKYDM 446

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528
           +VL  YG  ++G   D M+  YVL      H +  +A+ +L Y      E++  + K+  
Sbjct: 447 IVLQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    V  +A E++++ L+L  +L  +L       ++  ++ P++ V+  +E  G+
Sbjct: 506 NMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565

Query: 589 QIDQDLLKQVSAEISKNLLSLE 610
            +D + L+Q SA  +  +  +E
Sbjct: 566 LLDTEALQQSSAHFTAQMEQIE 587


>gi|195450899|ref|XP_002072681.1| GK13557 [Drosophila willistoni]
 gi|194168766|gb|EDW83667.1| GK13557 [Drosophila willistoni]
          Length = 2080

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/424 (34%), Positives = 233/424 (54%), Gaps = 32/424 (7%)

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +LL  +  L+ P+   +  ME TG    Q+ L+ +S ++   +  LE  IY+L G +FNL
Sbjct: 1666 QLLKFFRDLEMPIQLSLCNMEFTGFPAKQESLQGLSQQMLSTMKKLEAKIYELHGSRFNL 1725

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             S + +  +L    K        +G+  T+ Q LE++   D+PI + I+ +R+LS + + 
Sbjct: 1726 GSSQAVAKVLGLHRK-------ASGKVSTSRQILEKL---DSPISQLIVGYRKLSTVLAK 1775

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP----IKTDLGQ---KIRRA 736
                L      +  RV+   SL+ T TGR++  EPNLQN+     I  D  +     R A
Sbjct: 1776 NVQPLLKCC--QDNRVYG-QSLSYTATGRISMSEPNLQNVAKDFEINLDSDKVNISCRSA 1832

Query: 737  FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F+    K+ LISAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +N  +VS 
Sbjct: 1833 FLPMDFKRCLISADFCQLEMRILAHLSQDPALLEVMNSPRDLFTAIAARWNHMNESEVSE 1892

Query: 796  QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             +R   K I + I+YG+    LA  L+   +EA    +++   + GI  YI+K   F R 
Sbjct: 1893 NLRNGTKQICYGIVYGMGMRSLAESLKCTENEAQTVSEQFHQTYAGISAYIQKVVKFARN 1952

Query: 856  NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            NGYVETI GRR + + INS +  I+N  ER AIN+ IQGSAADI + A++ + K L  ++
Sbjct: 1953 NGYVETITGRRRYLEHINSGELQIKNQAERQAINSTIQGSAADIAKSAILRMEKHLLRYR 2012

Query: 916  L-------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
                    +  ++L +HDEL+FEVP ++    ++++  +ME +C   + L VPLKV +K+
Sbjct: 2013 ERLGITENSVNLVLHLHDELIFEVPIDKAKKIAKVLSLTME-SC---VKLSVPLKVKLKI 2068

Query: 969  SNNW 972
              +W
Sbjct: 2069 GRSW 2072


>gi|195399626|ref|XP_002058420.1| GJ14321 [Drosophila virilis]
 gi|194141980|gb|EDW58388.1| GJ14321 [Drosophila virilis]
          Length = 2086

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/427 (33%), Positives = 227/427 (53%), Gaps = 34/427 (7%)

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +LL  +  L+ P+   +  ME  G    +  L+++  ++   +  LE  I++L G +FNL
Sbjct: 1672 QLLKFFRELEMPIQMSLCNMECLGFPAQEQRLQRLLQQMLATMKKLEVKIFELHGSRFNL 1731

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             S + +  +L    K         G+  T+ Q LE++   D+PI + IL+ R+LS + + 
Sbjct: 1732 GSTQAVAKVLGLHRK-------ANGRISTSRQILEKL---DSPISQLILDHRKLSMVLAK 1781

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--IKTDLGQK-----IRRA 736
                L      +  RVH   S+  T TGR++  EPNLQN+      DLGQ+      R A
Sbjct: 1782 NMQPLLKCC--QANRVHG-QSITYTATGRISMSEPNLQNVAKDFLVDLGQEKINISCRSA 1838

Query: 737  FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F+S   K  L+SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +    VS 
Sbjct: 1839 FVSSNEKHCLLSADFCQLEMRILAHLSQDKALLKVMNSPQDLFTAIAAHWNKIAESDVSE 1898

Query: 796  QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH-RFPGIHEYIEKTKNFVR 854
            Q+R   K I + I+YG+    LA  L+    EA   I   FH  + GI  Y  K   F R
Sbjct: 1899 QLRNGTKQICYGIVYGMGMRSLAESLKCTEQEA-QMISEQFHLAYAGIKAYASKVVKFAR 1957

Query: 855  QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
             NGYVETI GRR + D INS +  ++N  ER AIN+ IQGSAADI + A++ + K++  +
Sbjct: 1958 NNGYVETITGRRRYLDHINSGEPQLKNQAERQAINSTIQGSAADIAKSAILRMEKNIARY 2017

Query: 915  KL-------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            +        A  ++L +HDEL+FEVP ++    ++++  +ME      + L VPL+V +K
Sbjct: 2018 REKLGLAENAVNLVLHLHDELIFEVPADKAKKVAKVLSLTMENC----VKLNVPLRVKLK 2073

Query: 968  VSNNWQE 974
            +  +W E
Sbjct: 2074 IGRSWGE 2080


>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
 gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
          Length = 582

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 170/567 (29%), Positives = 284/567 (50%), Gaps = 47/567 (8%)

Query: 429 IDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGIS 482
           +D  +   Q + G  T   ++     LS L++  E    LK+ HN KYD   +L ++GI 
Sbjct: 42  LDARMRLLQLAAGGETFVVDVFEVKDLSPLREALEGGP-LKVLHNAKYDYSFLLAQHGIR 100

Query: 483 MRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +    D ML + +LD G    S+ + ++A ++L  T   + K+ +      ++S  Q+ E
Sbjct: 101 LSPLFDTMLAAQLLDGGEQGPSYSLEAVAGRYLQET---VDKTARREDWSKELSREQL-E 156

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID----QDLLK 596
           +A  ++ ++L L   L+  L  E L  V  R++   +  +++ME+ GI++D    ++L +
Sbjct: 157 YAARDAAILLPLHERLQELLEREGLGPV-SRIEFGAVPAIAEMELAGIRLDVRRWRELER 215

Query: 597 QVSAEISKNLLSLE------ENIYDLSG--EKFNLSSPKQLGDILFT-KLKFPSGAKTKT 647
            V     +    LE      E +  L G   + NL+SP+Q+ +   +  ++ P      T
Sbjct: 216 VVRRRRDEAARRLESHFPQPEGVLPLEGLGPRLNLNSPQQIMEAFRSIGIELPD-----T 270

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
             W     D        +P  +++LE+R+L K   TY ++    ++ +T R+H  +    
Sbjct: 271 RMWTLLTVD--------HPAARDLLEYRELQKKLGTYLETYEGFVHPKTGRIHASFLQCR 322

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRLA   PN+Q IP + +     RR F++     L+ ADYSQIELRILA ++     
Sbjct: 323 VPTGRLACTNPNVQQIPHEDEF----RRCFVAGEGNVLVIADYSQIELRILAEVSGDPGF 378

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F    D+HR+ AA +FGV  E+V+ + R  AK INF + YG  P  LA QL      
Sbjct: 379 VEAFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINFGLAYGRGPRSLAAQLGTDEER 438

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A   I  YF  +  +  Y+ +T N   + G + T+ GR   +       S+ R   +R A
Sbjct: 439 ARRLIDEYFATYGRVQRYLNETANRALKEGALRTLSGRLRKFGRTRGLSSAERGALKREA 498

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N PIQG++ADI + A+I +H  L D  L  +++  IHDE V E  EE+   A+  +  +
Sbjct: 499 MNYPIQGTSADIAKLALIFIHSELRD--LDARLINCIHDEFVVECAEEQAEEAASRVRSA 556

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M +A   ++  RVP++V + VS  W++
Sbjct: 557 MVRAG-ERLLKRVPVEVEVAVSREWRK 582


>gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5]
 gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5]
          Length = 856

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/407 (34%), Positives = 218/407 (53%), Gaps = 31/407 (7%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS- 641
           M+  G  +D    K +  E  +NL +LE+++ ++     N++S +Q   +L+  L   S 
Sbjct: 463 MQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPLNVNSSRQWAQVLYEHLGLESK 522

Query: 642 -------GAKTKTGQWK----TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
                  G  T     K    T AQ   +  C    ++  +L +R++ K++STY +    
Sbjct: 523 GIKKGKIGLSTNEASLKALQATYAQSEVRGVC-VGVLLTKLLNYREIFKLQSTYVEPF-- 579

Query: 691 HINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            + + TQ ++HT +    T + RL+S  PNLQNIPI+ DLG+KI R FI+     LI  D
Sbjct: 580 -LKRHTQGKIHTTFYQNKTASSRLSSANPNLQNIPIRHDLGRKIARGFIASAGCVLIGVD 638

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH ++   L + FE   DIH   A  +FG   +   P     AK INF +I
Sbjct: 639 YSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQAQAKRPI----AKAINFGLI 694

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG--RRI 867
           YG+   +LA  L+I + EA  Y++RYF++FP I  ++E+ K  + Q G V T+ G  RR 
Sbjct: 695 YGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELKARILQEGQVTTLLGHVRRF 754

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            + +  SPK     +  R  +N   QGSA+D+ + AM+++++  E  +   KML+Q+HDE
Sbjct: 755 SFKQA-SPKLHADYL--REGVNTLFQGSASDLVKLAMLAIYQKYES-RADIKMLVQVHDE 810

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+ EV E E     Q I   ME        LRVPL+ +  +++NW +
Sbjct: 811 LILEVSEIEARELQQEIKTLMENI----YPLRVPLECHASIASNWAD 853



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 4/182 (2%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132
           R  + P YKANR   P  L  QLP++    +  G+ A+ ++G+E+DD+IA+  Y A K+ 
Sbjct: 63  RKTLDPAYKANRIA-PPHLHTQLPIILEWIEQMGLCALSVEGYESDDVIASLCY-AFKDH 120

Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDN 192
           F V IIS DKD  QLV     L D    ++  +   ++K+GI P +    Q L GDS D 
Sbjct: 121 F-VRIISFDKDFYQLVDSQVVLCDLSSRKESGVTECMQKYGIAPCQFRDYQGLVGDSSDG 179

Query: 193 IPGIPGIGYKTAALLLQEYGNLENILINASRIK-QKKRRENILEYAETARLSRKLVMLRT 251
             G+ GIG K A+ LL+++ NLE +  N   +K   K  E +      A LSR+L  L T
Sbjct: 180 YKGVEGIGPKNASKLLEKHANLEALYANLDNLKLSPKLIEALRRDYNQAFLSRELATLNT 239

Query: 252 DV 253
            +
Sbjct: 240 SL 241


>gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
 gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
          Length = 856

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/407 (34%), Positives = 218/407 (53%), Gaps = 31/407 (7%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS- 641
           M+  G  +D    K +  E  +NL +LE+++ ++     N++S +Q   +L+  L   S 
Sbjct: 463 MQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPLNVNSSRQWAQVLYEHLGLESK 522

Query: 642 -------GAKTKTGQWK----TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
                  G  T     K    T AQ   +  C    ++  +L +R++ K++STY +    
Sbjct: 523 GIKKGKIGLSTNEASLKALQATYAQSEVRGVC-VGVLLTKLLNYREIFKLQSTYVEPF-- 579

Query: 691 HINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            + + TQ ++HT +    T + RL+S  PNLQNIPI+ DLG+KI R FI+     LI  D
Sbjct: 580 -LKRHTQGKIHTTFYQNKTASSRLSSANPNLQNIPIRHDLGRKIARGFIASAGCVLIGVD 638

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH ++   L + FE   DIH   A  +FG   +   P     AK INF +I
Sbjct: 639 YSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQAQAKRPI----AKAINFGLI 694

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG--RRI 867
           YG+   +LA  L+I + EA  Y++RYF++FP I  ++E+ K  + Q G V T+ G  RR 
Sbjct: 695 YGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELKARILQEGQVTTLLGHVRRF 754

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            + +  SPK     +  R  +N   QGSA+D+ + AM+++++  E  +   KML+Q+HDE
Sbjct: 755 SFKQA-SPKLHADYL--REGVNTLFQGSASDLVKLAMLAIYQKYES-RADIKMLVQVHDE 810

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           L+ EV E E     Q I   ME        LRVPL+ +  +++NW +
Sbjct: 811 LILEVSEIEARELQQEIKTLMENI----YPLRVPLECHASIASNWAD 853



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 4/182 (2%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132
           R  + P YKANR   P  L  QLP++    +  G+ A+ ++G+E+DD+IA+  Y A K+ 
Sbjct: 63  RKTLDPAYKANRIA-PPHLHTQLPIILEWIEQMGLCALSVEGYESDDVIASLCY-AFKDH 120

Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDN 192
           F V IIS DKD  QLV     L D    ++  +   ++K+GI P +    Q L GDS D 
Sbjct: 121 F-VRIISFDKDFYQLVDSQVVLCDLSSRKESGVTECMQKYGIAPCQFRDYQGLVGDSSDG 179

Query: 193 IPGIPGIGYKTAALLLQEYGNLENILINASRIK-QKKRRENILEYAETARLSRKLVMLRT 251
             G+ GIG K A+ LL+++ NLE +  N   +K   K  E +      A LSR+L  L T
Sbjct: 180 YKGVEGIGPKNASKLLEKHANLEALYANLDNLKLSPKLIEALRRDYNQAFLSRELATLNT 239

Query: 252 DV 253
            +
Sbjct: 240 SL 241


>gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix
           jacchus]
          Length = 965

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 253/462 (54%), Gaps = 29/462 (6%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V ++  EN  ++ +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++
Sbjct: 456 VNQNVRENLKILYRLTMDLCSKLKDYGLWQLFCTLELPLIPILAVMESHTIQVNKEEMEK 515

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTG--QWK 651
            S+ +   L  LE+  + ++GE+F + S  QL +ILF KLK     P     +TG  ++ 
Sbjct: 516 TSSLLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSPRNCFPRTGLQKYP 575

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T++ +       +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 576 STSEAVLNALRDVHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 633

Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756
           RL++  PN+Q I   PI+    +              R  F+S      ++AD+SQIELR
Sbjct: 634 RLSAKHPNIQGISKHPIQITKPKNFKGKEDEILTICPRAMFVSSKGHTFLAADFSQIELR 693

Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           ILAH++    L ++F+ S   D+   + ++   V +E V+   R   K + +S++YG   
Sbjct: 694 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEHVTHADREQTKKVVYSVVYGAGK 753

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            RLA  L +P  EAA +++ +  ++  I ++ +       Q GY+ +I GRR     I++
Sbjct: 754 ERLAACLGVPVQEAAQFLESFLQKYKKIKDFAQAAIAQCHQTGYMVSIMGRRRPLPRIHA 813

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933
               ++   ER A+N  +QGSAAD+ + AMI V  ++   H L  +++ QIHDEL+FEV 
Sbjct: 814 RDQQLQAQAERQAVNFVVQGSAADLCKLAMIRVFAAVAASHTLTARLVAQIHDELLFEVE 873

Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + +I   + ++   + S+E+  + ++ L+VPLKV++    +W
Sbjct: 874 DSQIPECAALVRRTMESLEQVQVLELQLQVPLKVSLSAGRSW 915


>gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
          Length = 975

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 141/451 (31%), Positives = 250/451 (55%), Gaps = 28/451 (6%)

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           V+ +L + L  +L V  L  ++  L+ P+I +++ ME   I+++++ ++++SA +   L 
Sbjct: 398 VLHRLTMHLCSQLQVCGLWQLFWTLELPLIPILAVMESHRIRVNKEEMERMSALLGSRLK 457

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTTAQDLEQINCG 663
            LE+  + ++GE+F ++S  QL +ILF KL+     P  A   TG  +  +    ++N  
Sbjct: 458 ELEQEAHFVAGEQFLITSNHQLREILFGKLRLHLLRPQDASPATGLRRLPSTSGAELNAL 517

Query: 664 DN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            +  P+ + ILE+RQ+ KIKST+ D L   + K +  V + ++   T++GRL++  PN+Q
Sbjct: 518 QDLHPLPRIILEYRQVHKIKSTFVDGLLACMKKGS--VSSTWNQTGTVSGRLSAKHPNIQ 575

Query: 722 NI---PIKTDLGQKI-----------RRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            I   PI+    Q             R AF+S      ++AD+SQIELRILAH++    L
Sbjct: 576 GISKHPIQITKPQSFKGEEDELSISPRTAFVSSEGYTFLAADFSQIELRILAHLSGDPEL 635

Query: 768 YQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            ++F+ S   D+   + ++   V+ E+V+   R   K + ++++YG    RLA  L +P 
Sbjct: 636 LKLFQESERDDVFSTLTSQWKDVSPERVTHADREQTKKVVYAVVYGAGKERLAACLGVPV 695

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EAA +++ +  ++  I ++ + T    +Q GYVE+I GRR     I +    +R   ER
Sbjct: 696 REAARFLESFLQKYKKIKDFTQATVARCQQTGYVESIMGRRRPLPRIRAHDPQLRAQAER 755

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQII 944
            A N  +QGSAAD+ + AMI +  ++     L  ++L QIHDEL+FEV + ++   + ++
Sbjct: 756 QAANFVVQGSAADLCKMAMIRIFTAMATSPTLTARLLAQIHDELLFEVEDSQVPEFTALV 815

Query: 945 VHSMEK-ACLP--KINLRVPLKVNIKVSNNW 972
             +ME    +P  ++ L+VPLKV++    +W
Sbjct: 816 QGTMEALQHVPALELQLQVPLKVSLSAGRSW 846


>gi|255024133|ref|ZP_05296119.1| DNA polymerase I [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 110/240 (45%), Positives = 150/240 (62%), Gaps = 5/240 (2%)

Query: 734 RRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           R+ F+ S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++
Sbjct: 1   RQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDE 60

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F
Sbjct: 61  VDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRF 120

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
            ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L 
Sbjct: 121 AKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLV 180

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W
Sbjct: 181 SEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 236


>gi|332259946|ref|XP_003279044.1| PREDICTED: DNA polymerase nu-like [Nomascus leucogenys]
          Length = 1502

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 251/462 (54%), Gaps = 29/462 (6%)

Query: 538  VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            V ++  EN  ++ +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++
Sbjct: 995  VNQNVRENLKILYRLTMDLCSKLKDYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEK 1054

Query: 598  VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKTKTGQWK 651
             SA +   L  LE+  + ++GE+F + S  QL +ILF KLK        S  +T   ++ 
Sbjct: 1055 TSALLGARLKELEQEAHFVAGERFLIMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 1114

Query: 652  TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            +T++ +       +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 1115 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 1172

Query: 712  RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756
            RL++  PN+Q I   PI+    +              R  F+S      ++AD+SQIELR
Sbjct: 1173 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 1232

Query: 757  ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            ILAH++    L ++F+ S   D+   + ++   V +E+V+   R   K + ++++YG   
Sbjct: 1233 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 1292

Query: 815  FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
             RLA  L IP  EAA +++ +  ++  I ++         Q GYV +I GRR     I++
Sbjct: 1293 ERLAACLGIPVQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGYVVSIMGRRRPLPRIHA 1352

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933
                +R   ER A+N  +QGSAAD+ + AMI V  ++     L  +++ QIHDEL+FEV 
Sbjct: 1353 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASGTLTARLVAQIHDELLFEVE 1412

Query: 934  EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972
            + +I   + ++   + S+E+    ++ L+VPLKV++ V  +W
Sbjct: 1413 DPQIPECAALVRRTMESLEQVQALELRLQVPLKVSLSVGRSW 1454


>gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes]
          Length = 900

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 249/462 (53%), Gaps = 29/462 (6%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V ++  EN   + +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++
Sbjct: 393 VNQNVCENLKTLYRLTMDLCSKLKDYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEK 452

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWK 651
            SA +   L  LE+  + ++GE+F + S  QL +ILF KLK        S  +T   ++ 
Sbjct: 453 TSALLGARLKELEQEAHFVAGERFLIMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 512

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T++ +       +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 513 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 570

Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756
           RL++  PN+Q I   PI+    +              R  F+S      ++AD+SQIELR
Sbjct: 571 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 630

Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           ILAH++    L ++F+ S   D+   + ++   V +E+V+   R   K + ++++YG   
Sbjct: 631 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 690

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            RLA  L +P  EAA +++ +  ++  I ++         Q G V +I GRR     I++
Sbjct: 691 ERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 750

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933
               +R   ER A+N  +QGSAAD+ + AMI V  ++   H L  +++ QIHDEL+FEV 
Sbjct: 751 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 810

Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + +I   + ++   + S+E+    ++ L+VPLKV++    +W
Sbjct: 811 DPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 852


>gi|332818964|ref|XP_001147379.2| PREDICTED: DNA polymerase nu isoform 3 [Pan troglodytes]
          Length = 1502

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 249/462 (53%), Gaps = 29/462 (6%)

Query: 538  VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            V ++  EN   + +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++
Sbjct: 995  VNQNVCENLKTLYRLTMDLCSKLKDYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEK 1054

Query: 598  VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKTKTGQWK 651
             SA +   L  LE+  + ++GE+F + S  QL +ILF KLK        S  +T   ++ 
Sbjct: 1055 TSALLGARLKELEQEAHFVAGERFLIMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 1114

Query: 652  TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            +T++ +       +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 1115 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 1172

Query: 712  RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756
            RL++  PN+Q I   PI+    +              R  F+S      ++AD+SQIELR
Sbjct: 1173 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 1232

Query: 757  ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            ILAH++    L ++F+ S   D+   + ++   V +E+V+   R   K + ++++YG   
Sbjct: 1233 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 1292

Query: 815  FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
             RLA  L +P  EAA +++ +  ++  I ++         Q G V +I GRR     I++
Sbjct: 1293 ERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 1352

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933
                +R   ER A+N  +QGSAAD+ + AMI V  ++   H L  +++ QIHDEL+FEV 
Sbjct: 1353 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 1412

Query: 934  EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972
            + +I   + ++   + S+E+    ++ L+VPLKV++    +W
Sbjct: 1413 DPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 1454


>gi|224043967|ref|XP_002187783.1| PREDICTED: similar to polymerase (DNA directed), theta [Taeniopygia
            guttata]
          Length = 2588

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 173/641 (26%), Positives = 282/641 (43%), Gaps = 127/641 (19%)

Query: 452  YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510
            YL+K  + E  L +   I++ K +L   GIS+ G FED  +  ++LDSG   H + S+  
Sbjct: 1947 YLQKKTKKERSLIMYDFIQHYKTLLMACGISLEGSFEDPKVACWLLDSGSKEHTLHSMVT 2006

Query: 511  KWLSYTRKEILKSRKS-----SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
             +L  +   +L+   +     S+ +    D   +  A   S ++  +   L  +L  E L
Sbjct: 2007 NFLP-SELPLLEGVGTGQGVQSLGLSASRDQSGRYRAAIESVLVFNVMDQLHKELQKENL 2065

Query: 566  LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
              V+ +++ P    +S +E+ GI       +     +   L  +E   Y L+G  F+L+S
Sbjct: 2066 TDVFSKVEMPTHYCLSLLELNGIGFSTTAYETQKQVMQAKLSQIETKAYQLAGHSFSLTS 2125

Query: 626  PKQLGDILFTKLKFPSGAKTK-----------------------TGQWKTTAQDLEQINC 662
            P  + ++LF +LK P     K                       + Q+ TT   LE++  
Sbjct: 2126 PDDIAEVLFLELKLPQNGDVKVQGNKKTLGYTRRATAKGNRVRLSKQFSTTKDVLEKLKT 2185

Query: 663  GDNPIIKNILEWRQLSK--IKSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEP 718
              +P+   ILEWR+++    K  Y       +N     +R++   S   T TGR++  EP
Sbjct: 2186 -LHPLPGLILEWRRINNAITKVVYPLQREKRLNSALGMERIYPI-SQTHTATGRVSFTEP 2243

Query: 719  NLQ------------------------NIPIKTDLGQKIRR------------------- 735
            N+Q                        N+     LG + R+                   
Sbjct: 2244 NIQNVPRDFEIEMPTVVEESPPSQAHGNVNSHAALGGRCRKRSSILPNGLKVQAANISEE 2303

Query: 736  -----------AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                       AF+  P   +++ADYSQ+ELRILAH++    L Q      D+ + +AAE
Sbjct: 2304 RGIQFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSCDCRLIQALNGGTDVFKSIAAE 2363

Query: 785  IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
               ++ E V  + R+ AK I + IIYGI    L  Q+ I  +EAA+YI+ +  R+ G+ +
Sbjct: 2364 WKMIDPEAVGERTRQQAKQICYGIIYGIGAKSLGEQMGIDENEAANYIESFKSRYTGVQK 2423

Query: 845  YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            ++ +T    R++G+V+TI GRR +   I  P    +   ER A+N  +QGSAADI + A 
Sbjct: 2424 FLRETVRSCRRDGFVQTILGRRRYLPAIKDPNPYSKAHAERQAVNTTVQGSAADIVKTAT 2483

Query: 905  ISVHKSLE------------------------DHKLATKML---------LQIHDELVFE 931
            +++ K LE                          K  T ML         LQ+HDEL++E
Sbjct: 2484 VNIQKRLEAFPSVFKSHGHLESSFQRDKTGRLSRKRNTGMLHPIRGGFFILQLHDELLYE 2543

Query: 932  VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            V E+++   +QI+   ME A    I L V L V +K+  +W
Sbjct: 2544 VAEDDVIQVAQIVKREMENA----IKLSVKLDVKVKIGPSW 2580


>gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 919

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 227/421 (53%), Gaps = 22/421 (5%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+ K    V   +G+++ G   D  L +Y++  GR +  + +++   L Y  +E++ 
Sbjct: 506 KVMHDAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALS---LEYLGRELVP 562

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMID 578
           +++S   +   +D + Q   +   +  IL L   L    P++  E LL     ++ P   
Sbjct: 563 AQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGAEGLL---TDIELPTSA 619

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           ++++ME  GI  D++ L+++  + +  +       +   G +FNL SPKQL ++LF +L 
Sbjct: 620 LLARMERAGIAADREHLEEMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGELN 679

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDN----PIIKNILEWRQLSKIKSTYADSLPNHINK 694
            P   KTKTG + T A  L  +  G      P++  +L  R+ +K++ST  + L   I  
Sbjct: 680 LPKTRKTKTG-YTTDADSLAWL-AGQTEHELPVL--MLRHREQAKLRST-VEGLIKSIAP 734

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753
              R+HT ++     TGRL+S +PNLQNIP++TD G+ IRR F+     + L++ADYSQI
Sbjct: 735 -DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQI 793

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR++AH+++   L   F +  D+HR VA  +F V    V  +MRR  K +++ + YG+S
Sbjct: 794 ELRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLS 853

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F L+ QL I   EA   +  YF RF G+ +Y+ +     R  GY  T+ GRR +  ++N
Sbjct: 854 AFGLSQQLGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLN 913

Query: 874 S 874
           S
Sbjct: 914 S 914



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 158/307 (51%), Gaps = 12/307 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  +     G P NAI GF +ML     N+ ++   +HFAV F
Sbjct: 126 LMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 181

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R E + +YKANR K P+    Q+ L+             ++GFEADDIIAT  
Sbjct: 182 DVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIATLA 241

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181
             AE  GF V I++ D+D  QLVS  TT LY T  V E  +   E V +++G+ P +   
Sbjct: 242 TQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQYPD 301

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K K   +N  ++ E  +
Sbjct: 302 FAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 360

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299
           L+R+L  +  DVP+    E L     +  +L   L  LE     L  R+           
Sbjct: 361 LNRRLTEMVRDVPLDKAPEDLERAAYDRKQLAVLLDTLEIRNPSLRERLLAVDPGAEQEQ 420

Query: 300 EPVVLDI 306
           EPV  D+
Sbjct: 421 EPVTEDV 427


>gi|307266791|ref|ZP_07548315.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918184|gb|EFN48434.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 288

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 114/288 (39%), Positives = 179/288 (62%), Gaps = 10/288 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +   ++DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KL++  + + IA    + 
Sbjct: 2   SKFLVIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLIEEEKPDYIA----IA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR++ Y DYKA R  +PE L  Q+ L++     F I  +E++G+EADDII T 
Sbjct: 57  FDKKAPTFRHKEYQDYKATRQAMPEELTEQVDLLKEIIDGFNIKTLELEGYEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           + +AE++G  V +++ D+D +QLVS    +  + K     E+ D + V++++ I P++ +
Sbjct: 117 SKLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPQQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD  DNIPGIP IG KTA  LL+E+G++EN+L N S++K  K +ENI    E A
Sbjct: 177 DLKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLQNLSQLKG-KIKENIENNKELA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            +S++L  ++ D+PI I  E   ++D N  +L+     LEF  LI+ +
Sbjct: 236 VMSKRLATIKRDIPIEIDFEEYRVKDFNEEKLLELFNKLEFFSLIDNI 283


>gi|218660193|ref|ZP_03516123.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 238

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 113/188 (60%), Positives = 143/188 (76%)

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           DIIATY   AE  G  VTI+S+DKDLMQLV+    +YD++K+++I I  V++KWG+PPEK
Sbjct: 1   DIIATYARQAEATGADVTIVSSDKDLMQLVTINVHMYDSMKDKQIGIPDVVEKWGVPPEK 60

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   E
Sbjct: 61  MIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANIE 120

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A+LSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+ 
Sbjct: 121 MAKLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTSLTRRVAEVCDCDASA 180

Query: 299 IEPVVLDI 306
           IEP V+ I
Sbjct: 181 IEPAVVPI 188


>gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens]
 gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu
 gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens]
 gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct]
          Length = 900

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 139/462 (30%), Positives = 249/462 (53%), Gaps = 29/462 (6%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V ++  EN   + +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++
Sbjct: 393 VNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEK 452

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWK 651
            SA +   L  LE+  + ++GE+F ++S  QL +ILF KLK        S  +T   ++ 
Sbjct: 453 TSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 512

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T++ +       +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 513 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 570

Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756
           RL++  PN+Q I   PI+    +              R  F+S      ++AD+SQIELR
Sbjct: 571 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 630

Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           IL H++    L ++F+ S   D+   + ++   V +E+V+   R   K + ++++YG   
Sbjct: 631 ILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 690

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            RLA  L +P  EAA +++ +  ++  I ++         Q G V +I GRR     I++
Sbjct: 691 ERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 750

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933
               +R   ER A+N  +QGSAAD+ + AMI V  ++   H L  +++ QIHDEL+FEV 
Sbjct: 751 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 810

Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + +I   + ++   + S+E+    ++ L+VPLKV++    +W
Sbjct: 811 DPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 852


>gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens]
          Length = 900

 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 139/462 (30%), Positives = 249/462 (53%), Gaps = 29/462 (6%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V ++  EN   + +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++
Sbjct: 393 VNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEK 452

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWK 651
            SA +   L  LE+  + ++GE+F ++S  QL +ILF KLK        S  +T   ++ 
Sbjct: 453 TSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 512

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T++ +       +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 513 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 570

Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756
           RL++  PN+Q I   PI+    +              R  F+S      ++AD+SQIELR
Sbjct: 571 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 630

Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           IL H++    L ++F+ S   D+   + ++   V +E+V+   R   K + ++++YG   
Sbjct: 631 ILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 690

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            RLA  L +P  EAA +++ +  ++  I ++         Q G V +I GRR     I++
Sbjct: 691 ERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 750

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933
               +R   ER A+N  +QGSAAD+ + AMI V  ++   H L  +++ QIHDEL+FEV 
Sbjct: 751 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 810

Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + +I   + ++   + S+E+    ++ L+VPLKV++    +W
Sbjct: 811 DPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 852


>gi|195053948|ref|XP_001993888.1| GH22128 [Drosophila grimshawi]
 gi|193895758|gb|EDV94624.1| GH22128 [Drosophila grimshawi]
          Length = 2218

 Score =  210 bits (535), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 143/425 (33%), Positives = 223/425 (52%), Gaps = 34/425 (8%)

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +LL  +  L+ P+   +  ME  G       L+ +  ++   +  LE  IY+L G +FNL
Sbjct: 1804 QLLKFFRELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSRFNL 1863

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             S + +  +L    K         G+  T+ Q LE++   D+P+ + IL +R+LS + S 
Sbjct: 1864 GSTQAVAKVLGLHRK-------ANGRISTSRQILEKL---DSPMSQLILNYRKLSMLLSK 1913

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--IKTDLGQK-----IRRA 736
                L      +  RVH   S+  T TGR++  EPNLQN+    +  LG +      R A
Sbjct: 1914 NMQPLLKCC--QANRVHG-QSITYTATGRISMSEPNLQNVAKDFEIQLGAEKINISCRSA 1970

Query: 737  FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F     K+ L+SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +   +VS 
Sbjct: 1971 FAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNKIPESEVSE 2030

Query: 796  QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH-RFPGIHEYIEKTKNFVR 854
            Q+R   K I + I+YG+    LA  L+    EA   I   FH  + GI  Y  K   F R
Sbjct: 2031 QLRNGTKQICYGIVYGMGMRSLAESLKCTEQEA-QMISEQFHLAYAGIKAYAMKVVKFAR 2089

Query: 855  QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
             NGYVETI GRR + D INS +  I+N  ER AIN+ IQGSAADI + A++ + K++  +
Sbjct: 2090 NNGYVETITGRRRYLDHINSGEPQIKNQAERQAINSTIQGSAADIAKSAILRMEKNIGRY 2149

Query: 915  KL-------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            +        A  ++L +HDEL+FEVP ++    ++++  +ME      + L VPL+V +K
Sbjct: 2150 REKLGLAENAVNLVLHLHDELIFEVPVDKAKKVAKVLSLTMENC----VKLSVPLRVKLK 2205

Query: 968  VSNNW 972
            +  +W
Sbjct: 2206 IGRSW 2210


>gi|327282241|ref|XP_003225852.1| PREDICTED: DNA polymerase theta-like [Anolis carolinensis]
          Length = 2435

 Score =  210 bits (535), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 178/660 (26%), Positives = 290/660 (43%), Gaps = 123/660 (18%)

Query: 429  IDLSVHTSQDSTGKNTLTKEILSYLKKFFEN---EHFLKIGHNIKYDKLVLHRYGISMRG 485
            I++S   +  S  +N    E L +L+   ++   +  L +   I++ K +L   GIS+ G
Sbjct: 1775 IEMSASLAPPSLDQNLTVAERLEHLQSCLQDSKRDFSLAMYEFIQHYKTLLKACGISLAG 1834

Query: 486  -FEDIMLMSYVLDSG---RSSHD-IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
             FED  +  ++LD G   RS H+ +AS   + L    K        SI ++  +D   + 
Sbjct: 1835 SFEDPKVACWLLDPGSNERSLHNMVASFLPEELFLLDKIGTGQGNQSIGLNASADHSGRY 1894

Query: 541  HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             A   S ++  L   L   L  + L  ++ +++ P    ++ +E+ GI       +    
Sbjct: 1895 RAAVESVLVFHLMDKLSALLQKDNLQDIFHKMEMPNQYCLALLELNGIGFSTAECETQKH 1954

Query: 601  EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK----------TG-- 648
             +   L   E  IY L+G  F+L+ P  + ++LF +LK PS  ++K          TG  
Sbjct: 1955 VMEAKLSETENQIYQLAGHSFSLTCPDDIAEVLFLELKLPSDGESKMQRGKKTLGYTGRA 2014

Query: 649  -----------QWKTTAQDLEQINCGDNPIIKNILEWRQLSK-----IKSTYADSLPNHI 692
                       Q+ TT   LE++    +P+   ILEWR+++      I     + L N I
Sbjct: 2015 VVNGNRVRLSKQFSTTKGVLEKLK-ALHPLPGLILEWRKITNAITKVIFPLQREKLLNPI 2073

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--------------------------- 725
                +R++   S  +T TGR++  EPN+QN+P                            
Sbjct: 2074 -LGMERIYPV-SQTNTATGRISFREPNIQNVPKDFEIEMPILVEESPPTQRQHKMFNAPR 2131

Query: 726  -----------------------KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                                   K      +R AF+  P   +++ADYSQ+ELRILAH+ 
Sbjct: 2132 NRNRKSSVLPCEPKNLTERLTSKKIPFAVSMRHAFVPFPGGLILAADYSQLELRILAHLC 2191

Query: 763  KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
                L Q   +  D+ R +AAE   +  E V   +R+ AK I + +IYGI    L  Q+ 
Sbjct: 2192 CDRRLLQALNDGADVFRSIAAEWKMMAPEAVGNDLRQQAKQICYGMIYGIGAKSLGEQMG 2251

Query: 823  IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
            +   +A+ YI  +  R+PGI +++ +T     Q+G+V+TI GRR +   I       +  
Sbjct: 2252 VDEKDASYYIDSFKSRYPGIQKFLRETVKKCNQDGFVQTIMGRRRYLPTIRESNPYKKAQ 2311

Query: 883  NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK----------------------- 919
             ER A+N  +QGSAADI + A +++ K LE    A K                       
Sbjct: 2312 AERQAVNTVVQGSAADIVKTATVNIQKQLEALPSAVKSFEHLCSSTQNKWSGMAEKRQIM 2371

Query: 920  -------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                    +LQ+HDEL++EV E+ +   +QI+ H ME A    + L V L V +KV ++W
Sbjct: 2372 YPKHGGFFILQLHDELLYEVAEDSMIQVAQIVKHEMEHA----VKLSVKLSVKVKVGSSW 2427


>gi|195069821|ref|XP_001997038.1| GH25245 [Drosophila grimshawi]
 gi|193905759|gb|EDW04626.1| GH25245 [Drosophila grimshawi]
          Length = 2235

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/425 (33%), Positives = 223/425 (52%), Gaps = 34/425 (8%)

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +LL  +  L+ P+   +  ME  G       L+ +  ++   +  LE  IY+L G +FNL
Sbjct: 1821 QLLKFFRELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSRFNL 1880

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             S + +  +L    K         G+  T+ Q LE++   D+P+ + IL +R+LS + S 
Sbjct: 1881 GSTQAVAKVLGLHRK-------ANGRISTSRQILEKL---DSPMSQLILNYRKLSMLLSK 1930

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--IKTDLGQK-----IRRA 736
                L      +  RVH   S+  T TGR++  EPNLQN+    +  LG +      R A
Sbjct: 1931 NMQPLLKCC--QANRVHG-QSITYTATGRISMSEPNLQNVAKDFEIQLGAEKINISCRSA 1987

Query: 737  FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F     K+ L+SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +   +VS 
Sbjct: 1988 FAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNKIPESEVSE 2047

Query: 796  QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH-RFPGIHEYIEKTKNFVR 854
            Q+R   K I + I+YG+    LA  L+    EA   I   FH  + GI  Y  K   F R
Sbjct: 2048 QLRNGTKQICYGIVYGMGMRSLAESLKCTEQEA-QMISEQFHLAYAGIKAYAMKVVKFAR 2106

Query: 855  QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
             NGYVETI GRR + D INS +  I+N  ER AIN+ IQGSAADI + A++ + K++  +
Sbjct: 2107 NNGYVETITGRRRYLDHINSGEPQIKNQAERQAINSTIQGSAADIAKSAILRMEKNIGRY 2166

Query: 915  KL-------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            +        A  ++L +HDEL+FEVP ++    ++++  +ME      + L VPL+V +K
Sbjct: 2167 REKLGLAENAVNLVLHLHDELIFEVPVDKAKKVAKVLSLTMENC----VKLSVPLRVKLK 2222

Query: 968  VSNNW 972
            +  +W
Sbjct: 2223 IGRSW 2227


>gi|225848972|ref|YP_002729136.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643758|gb|ACN98808.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 298

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/285 (41%), Positives = 168/285 (58%), Gaps = 5/285 (1%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRA+YA P LS   DG P  AI GF  ML KL+          + AV
Sbjct: 2   DKKLLLVDGSSYLYRAYYALPPLSA-PDGTPTGAIYGFVRMLLKLISTFN----TPYIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  T R++IY +YKA R + P  L  Q+P ++   +  GI  +EI G+EADDIIAT
Sbjct: 57  VFDRPEKTVRHKIYKEYKATRKETPNDLQVQIPKIKEIIKLLGIKILEIPGYEADDIIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  AE   F V I++ DKD+ QL+     +++ +KEE +D + VI+K+G+ P++ +   
Sbjct: 117 LSKKAENRSFEVIIVTPDKDMNQLIDQHIKIFNPMKEEIVDTQKVIEKYGVSPQQFIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDSIDNIPGI G+G KTAA LLQE+G+++ IL N  ++K K +        E  +L 
Sbjct: 177 VLVGDSIDNIPGIKGVGPKTAASLLQEFGSIDRILENKDKLKGKLKESFAAVSKEDIQLV 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R LV L  D+ I + +E L  +  +  +L    + L F  LI  +
Sbjct: 237 RSLVKLHQDIDIPVEIESLKKDKPDLIKLKEIFEKLGFKSLIKEI 281


>gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta]
          Length = 1484

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 252/462 (54%), Gaps = 29/462 (6%)

Query: 538  VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            V ++  +N  ++ +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++
Sbjct: 995  VNQNVRDNLKILYRLTMDLCSKLKEYGLWQLFCTLEVPLIPILAVMESHAIQVNKEEMEK 1054

Query: 598  VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKTKTGQWK 651
            +SA +   L  LE+  + ++GE+F + S  QL +ILF KLK        S  +T   ++ 
Sbjct: 1055 ISALLGARLKKLEQEAHFVAGERFLIMSSNQLREILFGKLKLHLLSRRNSLPRTGLQKYP 1114

Query: 652  TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            +T++ +       +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 1115 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 1172

Query: 712  RLASLEPNLQNI---PI----------KTD--LGQKIRRAFISPPTKKLISADYSQIELR 756
            RL++  PN+Q I   PI          K D  L    R  F+S      ++AD+SQIELR
Sbjct: 1173 RLSAKHPNIQGISKHPIQITKPKNFKGKEDEILTISPRAMFVSSKGHTFLAADFSQIELR 1232

Query: 757  ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            ILAH++    L ++F+ S   D+   + ++   V +E V+   R   K + ++++YG   
Sbjct: 1233 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPMEHVTHADREQTKRVVYAVVYGAGK 1292

Query: 815  FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
             RLA  L +P  EAA +++ +  ++  I ++         + GYV +I GRR     I++
Sbjct: 1293 ERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIAQCHRTGYVVSIMGRRRPLPRIHA 1352

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVP 933
                +R   ER A+N  +QGSAAD+ + AMI V  ++   + L  +++ QIHDEL+FEV 
Sbjct: 1353 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIRVFTAVATSRTLTARLVAQIHDELLFEVE 1412

Query: 934  EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972
            + +I   + ++   + S+E+    ++ L+VPLKV++    +W
Sbjct: 1413 DPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 1454


>gi|15606735|ref|NP_214115.1| DNA polymerase I [Aquifex aeolicus VF5]
 gi|17366200|sp|O67550|EX53_AQUAE RecName: Full=5'-3' exonuclease
 gi|2983968|gb|AAC07515.1| DNA polymerase I 3'-5' exo domain [Aquifex aeolicus VF5]
          Length = 289

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/289 (41%), Positives = 176/289 (60%), Gaps = 15/289 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+++DGSSF+YR+F+A P LS    G P NAI GF  ML+ L++  R +    +  V+FD
Sbjct: 4   LYILDGSSFVYRSFFALPPLSTSK-GFPTNAIYGFLRMLFSLIKKERPQ----YLVVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            PA T R +IY DYK  RPK P+ L  Q+P+++   +  GIP +E+ G+EADD+IA   Y
Sbjct: 59  APAKTKREKIYADYKKQRPKAPDPLKVQIPVIKEILKLAGIPLLELPGYEADDVIA---Y 115

Query: 127 IAEK---EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +AEK   +GF V I S DKDL+QLVS    + + + +E    E VIKK+G+ P+K+    
Sbjct: 116 LAEKFSQKGFKVKIYSPDKDLLQLVSENVLVINPMNDEVFTKERVIKKFGVEPQKIPDYL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD +DN+PGI G+G KTA  +L++YG++ENIL N  + +++  R       E   LS
Sbjct: 176 ALVGDKVDNVPGIEGVGPKTAINILKKYGSVENILKNWEKFQREFPRAK----KEDLELS 231

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
            KLV L TD+ I +  E L ++  +  +L   L+ LE   L+  V   +
Sbjct: 232 YKLVKLYTDLDIELSEEDLKIKRPDLNKLKQKLQELEMKSLLKEVDKIF 280


>gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279]
 gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279]
          Length = 1273

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 215/369 (58%), Gaps = 33/369 (8%)

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLD 497
           + GK    +  L  LKKF E      I   +  D  VL  + G+ +   +D ML++Y+ D
Sbjct: 338 AGGKVYRGQPSLQELKKFPE------IRSMVAKDLSVLALKEGVWVPPGDDPMLLAYLYD 391

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
              S+ D AS  +++ +                D  SD        E +     LW  L+
Sbjct: 392 P--SNSDPASTVRRYGAG---------------DWGSDPG------ERAQAAHTLWETLQ 428

Query: 558 PKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
            ++    K+  +Y++++KP+  V++++E  GI ++ + L Q+S E++K +  LE  I+ L
Sbjct: 429 SRIGENPKIEWLYQQIEKPLSAVLARIEARGISLNAEYLLQLSEELAKEISYLEAEIHRL 488

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPS-GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           +G  FN++S  QL  +L+ +LK  + G KT+TG+  T A  LE++  G +PII+ IL +R
Sbjct: 489 AGRSFNVNSRDQLEVVLYDELKLSAPGRKTQTGKRSTAASALEEL-LGQHPIIERILTYR 547

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           +L+K+KSTY D LP  I+ +T R+HT ++   T TGRL+S++PNLQNIP++T++G++IR+
Sbjct: 548 ELTKLKSTYLDPLPKLIHPKTGRLHTRFNQTGTATGRLSSVDPNLQNIPVRTEIGRRIRK 607

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF + P  +L+ ADYSQIELR+LAH++    L  VF    DIH   AA +FG+  +KV  
Sbjct: 608 AFRAAPGMRLVVADYSQIELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDKVGA 667

Query: 796 QMRRHAKTI 804
           + RR AK +
Sbjct: 668 EQRRAAKCL 676



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 154/288 (53%), Gaps = 8/288 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + + + ++LVDG    YR+++A   L+    G P  AI GF   L KLL+      I   
Sbjct: 16  LPRPDRIWLVDGHHLAYRSYFAFEKLATSR-GEPTQAIFGFLRTLLKLLKEDGDCVI--- 71

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD P  TFR++ + +YKA R   P+   PQL  ++      G+  +E+ G+EADD+
Sbjct: 72  --VVFDPPTRTFRHDAFEEYKAGRAATPDDFHPQLEKIKELVDLMGLQRLEVPGYEADDV 129

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    AE+EG+ V I++ D+D  QL+S    +        +  + V +K+G+   + V
Sbjct: 130 IGTLAKKAEQEGYPVRILTGDRDSFQLLSEAVQVM-LPDGRLMHPQAVQEKYGVSVAQWV 188

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             ++L GDS DN+PG  GIG KTAA LLQE+G+LE +  N   +  K  R ++ E  +  
Sbjct: 189 DYRSLVGDSSDNLPGAKGIGEKTAAKLLQEWGSLEGLYANLEALSPKI-RASLEESRDNV 247

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +LSR L ++ TD+P+ +        + +   L   L+ LEF  ++  +
Sbjct: 248 QLSRTLSLIHTDLPLELDFRDCHRREPDRGALREALEKLEFGSILREL 295



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 6/172 (3%)

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            TINF ++YG+S  RL+ +L I  +EA  +I+RYF  +P + E+IE+     RQ GYVET+
Sbjct: 1106 TINFGVLYGMSAHRLSNELSISYAEAEGFIERYFASYPKVREWIERVLADARQTGYVETM 1165

Query: 863  FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            FGRR    ++ S   S+R   ER A N P+QG+AAD+ + AM+ +   LE   L   ++L
Sbjct: 1166 FGRRRFVADLGSRVRSVREAAERMAFNMPVQGTAADLMKLAMVKLQPELE--PLEAHLVL 1223

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            Q+HDEL+ E P ++    + ++   M++A      L VPL+V   +  NW E
Sbjct: 1224 QVHDELLVEAPADKAEAVAGVVREVMQQAW----ALAVPLEVGTGIGENWLE 1271


>gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus]
          Length = 900

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 244/462 (52%), Gaps = 30/462 (6%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V ++   N  ++ +L + L  +L +  L  ++  L+ P+I +++ ME   IQ+++D +++
Sbjct: 394 VNQNVCANLRILYRLTMGLCSQLKIYGLWQLFCTLELPLIPILAVMESHNIQVNKDEMER 453

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTT 653
            SA +   L  LE+  + ++GE+F ++S  QL +ILF KLK     P     KTG     
Sbjct: 454 TSAVLGSRLKELEQEAHFVAGEQFLITSNNQLREILFGKLKLHLLRPRETLPKTGLQGHL 513

Query: 654 AQDLEQINCGDN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +     +N   N  P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 514 STSEAMLNVLQNFHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 571

Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756
           RL++  PN+Q I   PI+    Q              R  F+S      ++AD+SQIELR
Sbjct: 572 RLSAKRPNIQGISKHPIQITKPQNFKGKEDDILTISPRTMFVSSEGHTFLAADFSQIELR 631

Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           ILAH++    L ++F+ S   D+   + ++   +  E V+   R   K + +S++YG   
Sbjct: 632 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPSECVTHVEREQTKKVVYSVVYGAGK 691

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            RLA  L +   EAA +++ +  ++  I ++ + T     Q GYV +I GRR     I +
Sbjct: 692 ERLAACLGVTVQEAARFLE-FLQKYKKIKDFAQATIARCHQTGYVASIMGRRRPLPRIRA 750

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVP 933
               +R   ER A+N  +QGSAAD+ + AMI +  ++     L  +++ QIHDEL+FEV 
Sbjct: 751 QDQQLRAQAERQAVNFVVQGSAADLCKMAMIHIFAAVATSPTLTARLVAQIHDELLFEVE 810

Query: 934 EEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIKVSNNW 972
           + ++   S ++  +ME        ++ L+VPLKV++    +W
Sbjct: 811 DSQVPEFSALVRGTMESLQHVQALELQLQVPLKVSLSAGRSW 852


>gi|118083459|ref|XP_416549.2| PREDICTED: similar to DNA polymerase theta [Gallus gallus]
          Length = 2620

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 175/663 (26%), Positives = 296/663 (44%), Gaps = 140/663 (21%)

Query: 442  KNTLTKEILSYLKKFFE--NEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDS 498
            KN    E L +L+ + +   E  L + + I++ K ++   GIS+ G FED  +  ++LDS
Sbjct: 1962 KNLSVTERLRHLQLYLQEKQERSLVMYNFIQHYKTLVMACGISLEGSFEDPKVACWLLDS 2021

Query: 499  GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH------AIENSNVILQL 552
            G     + ++   +L      +L+   +   +  +  S  ++H      AIE S +I  +
Sbjct: 2022 GSKECTLHNMVTNFLP-NELPLLEGVGTGQGVQSLGLSSSEDHSGRYRAAIE-SVLIFNI 2079

Query: 553  WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
               L  +L  E L  V+ +++ P    ++ +E+ GI       +     +   L  +E  
Sbjct: 2080 MNQLHSELRKENLTDVFSKVEMPNHYCLALLELNGIGFSTAAYETQKQVMQAKLTEIETK 2139

Query: 613  IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-----------------------TGQ 649
             Y L+G  F+L+SP  + ++LF +LK P     K                       + Q
Sbjct: 2140 AYQLAGHSFSLTSPDDVAEVLFLELKLPQNGDVKVQGNKKTLGYTRRTSIKGNRVRLSKQ 2199

Query: 650  WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR------TQRVHTFY 703
            + TT   LE++    +P+   ILEWR+++   S      P    KR       +R++   
Sbjct: 2200 FSTTKDVLEKLK-PLHPLPGLILEWRRINSAISKVV--FPLQREKRFNSALGMERIYPV- 2255

Query: 704  SLASTMTGRLASLEPNLQNI----------------PIKT----------------DLGQ 731
            S   T TGR++  EPN+QN+                P +T                 LG+
Sbjct: 2256 SQTHTATGRVSFAEPNIQNVPRDFEIEMPIVVEESPPFRTHVYSCAVSRSLLNFERGLGR 2315

Query: 732  K---------------------------IRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            K                           +R AF+  P   +++ADY Q+ELRILAH ++ 
Sbjct: 2316 KHSSVLPSGVNTWTADRTERRGIPFFVSMRHAFVPFPGGFILAADYCQLELRILAHFSRD 2375

Query: 765  TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
              L + F    D+ + +AAE   ++ E V    R+ AK I + IIYGI    L  Q+ I 
Sbjct: 2376 CRLIEAFNKGADVFKSIAAEWKMIDSEAVGDSTRQQAKQICYGIIYGIGAKSLGEQMGID 2435

Query: 825  RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             ++AA+YI+ +  R+ GI +++++T +  R++G+V+TI GRR +   I      I+   E
Sbjct: 2436 DNKAANYIESFKSRYTGIQKFLKETVSNCRRDGFVQTILGRRRYLPAIRDSNPYIKAHAE 2495

Query: 885  RAAINAPIQGSAADITRRAMISVHKSLE--------------------DHKLATK----- 919
            R A+N  +QGSAADI + A +++ + LE                      +L+ K     
Sbjct: 2496 RQAVNTTVQGSAADIVKTATVNIQRRLEALSSVNKSHGHLENSFQRDKTGRLSRKRNREM 2555

Query: 920  --------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
                     +LQ+HDEL++EV E+++   +QI+ H ME A    + L V L V +K+  +
Sbjct: 2556 LHPISGGFFILQLHDELLYEVAEDDVIQVAQIVKHEMENA----VKLSVKLNVKVKIGPS 2611

Query: 972  WQE 974
            W E
Sbjct: 2612 WGE 2614


>gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens]
          Length = 891

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 138/459 (30%), Positives = 244/459 (53%), Gaps = 32/459 (6%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V ++  EN   + +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++
Sbjct: 393 VNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEK 452

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWK 651
            SA +   L  LE+  + ++GE+F ++S  QL +ILF KLK        S  +T   ++ 
Sbjct: 453 TSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 512

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T++ +       +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 513 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 570

Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756
           RL++  PN+Q I   PI+    +              R  F+S      ++AD+SQIELR
Sbjct: 571 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 630

Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           IL H++    L ++F+ S   D+   + ++   V +E+V+   R   K + ++++YG   
Sbjct: 631 ILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 690

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            RLA  L +P  EAA +++ +  ++  I ++         Q G V +I GRR     I++
Sbjct: 691 ERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 750

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933
               +R   ER A+N  +QGSAAD+ + AMI V  ++   H L  +++ QIHDEL+FEV 
Sbjct: 751 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 810

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + +I   + ++  +ME         +VPLKV++    +W
Sbjct: 811 DPQIPECAALVRRTMESL------EQVPLKVSLSAGRSW 843


>gi|218515593|ref|ZP_03512433.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 161

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 97/161 (60%), Positives = 122/161 (75%), Gaps = 3/161 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           DDIIATY   AE  G  VTI+S+DKDLMQLV+P   +YD++
Sbjct: 121 DDIIATYARQAEAVGADVTIVSSDKDLMQLVTPNVHMYDSM 161


>gi|153792006|ref|NP_001093496.1| DNA polymerase nu [Danio rerio]
 gi|108735435|gb|ABG00195.1| DNA polymerase nu [Danio rerio]
          Length = 1146

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 141/458 (30%), Positives = 240/458 (52%), Gaps = 34/458 (7%)

Query: 543  IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            I N +++ +L   L  KL  + L  +Y  +++ MI V++ ME   + +D++ LK+ S  +
Sbjct: 678  ISNLSLLHKLMEELHYKLRTQGLWQLYSGIEQKMIPVLAAMESYKMHVDKEALKKTSEML 737

Query: 603  SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL---------KFPSGAKTKTGQWKTT 653
               L  LE+  +  +G+KF +SS  QL  ILF KL         K P   K +    +T 
Sbjct: 738  GSKLKQLEQEAHQAAGQKFLVSSSAQLRLILFEKLRLHELCENKKLPKTVKQQQSTSETA 797

Query: 654  AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
               L++++    P+ K ILE+RQ+ KIK+T+ D + +   K    + + ++  ST++GRL
Sbjct: 798  LLQLQKLH----PLPKIILEYRQIHKIKTTFVDGILSCTRKTF--ISSTWNQTSTVSGRL 851

Query: 714  ASLEPNLQ---NIPIKTDLGQKI------------RRAFISPPTKKLISADYSQIELRIL 758
            ++  PN Q    +P++    Q I            R  FI       +SAD+ Q+ELR+L
Sbjct: 852  SAKHPNFQALPKLPLQISKKQYIHGKASDIVTVHPRAMFIPREGWTFLSADFCQVELRLL 911

Query: 759  AHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            AH++    L ++F++   D   M+AA+  GV+ ++VS + R  AK I +S++YG    RL
Sbjct: 912  AHLSADPQLLRIFQSPEADAFTMLAAQWKGVSEDRVSLEDREQAKRIVYSVVYGAGRERL 971

Query: 818  ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
            +  L +   EA+ +   +   +  +  +I+ T    + +G+V +I GRR     I+S   
Sbjct: 972  SGILGVSAEEASRFQDSFLKTYREVPAFIQHTIQHCQSHGFVRSIMGRRRFLPHIHSADW 1031

Query: 878  SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            S+RN  ER A+N  +QGSAAD+ + AMI +   +       +++ QIHDEL+FEV   ++
Sbjct: 1032 SLRNQAERQAVNFVLQGSAADLAKLAMIRICSQVSSDSQTARLVAQIHDELLFEVEISQL 1091

Query: 938  TTASQIIVHSMEKAC---LPKINLRVPLKVNIKVSNNW 972
               + ++  +ME         +NL VPLKV +    +W
Sbjct: 1092 DQFAALVKKTMESLQHIEYLNVNLSVPLKVLLSTGRSW 1129


>gi|73951787|ref|XP_545922.2| PREDICTED: similar to polymerase (DNA directed) nu [Canis
           familiaris]
          Length = 947

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 242/452 (53%), Gaps = 29/452 (6%)

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           ++ +L + L  +L V  L  ++  L+ P+I +++ ME   I+++++ +++ SA +   L 
Sbjct: 403 ILYRLTMGLCSQLKVYGLWQLFCTLELPLIPILAVMESHSIRVNREEMERTSALLGSRLK 462

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTTAQDLEQINCG 663
            LE+  + ++GE+F ++S  QL +ILF KLK     P     +TG  +  +     +N  
Sbjct: 463 ELEQEAHFVAGEQFLITSNNQLQEILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVLNAL 522

Query: 664 DN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            +  P+ K ILE+R++ K KS + D L   + K +  + + ++   T+TGRL++  PN+Q
Sbjct: 523 QDLHPLPKIILEYRRVHKTKSAFVDGLLAFVRKGS--ISSMWNQTGTVTGRLSARHPNIQ 580

Query: 722 NI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            I   PIK    Q              R  F++P +   ++AD+SQIELRILAH++    
Sbjct: 581 GISKHPIKITKPQNFKGTEGTMLTISPRSMFVAPESHTFLAADFSQIELRILAHLSGDPE 640

Query: 767 LYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
           L ++F  S   D+   + ++   +  E V+   R   K + +S++YG    RLA  L + 
Sbjct: 641 LLKLFRESGRDDVFSTLTSQWKDIPPECVTYADREQTKKVVYSVVYGAGKERLAACLGVT 700

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EAA +++ +  ++  I ++++ T     Q GYV +I GRR     ++     +R   E
Sbjct: 701 VQEAAQFLESFLQKYKKIKDFVQTTIAQCHQTGYVASIMGRRRPLPRVHDQDQQLRAQAE 760

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQI 943
           R A+N  +QGSAAD+ + AMI + +++     L  +++ QIHDEL+FEV + +I   + +
Sbjct: 761 RQAVNFVVQGSAADLCKMAMIRIFRAVATSPTLTARLVAQIHDELLFEVEDSQIPEFAAL 820

Query: 944 IVHSMEKACLPK---INLRVPLKVNIKVSNNW 972
           +  +ME     +   + L+VPLKV++    +W
Sbjct: 821 VRGTMESLQYVRALGLQLQVPLKVSLSAGPSW 852


>gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens]
          Length = 579

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/459 (30%), Positives = 243/459 (52%), Gaps = 32/459 (6%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V ++  EN   + +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++
Sbjct: 26  VNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEK 85

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTT 653
            SA +   L  LE+  + ++GE+F ++S  QL +ILF KLK        +  +TG  K  
Sbjct: 86  TSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 145

Query: 654 AQDLEQINCGDN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +   E +N   +  P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 146 STVSEALNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 203

Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756
           RL++  PN+Q I   PI+    +              R  F+S      ++AD+SQIELR
Sbjct: 204 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 263

Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           IL H++    L ++F+ S   D+   + ++   V +E+V+   R   K + ++++YG   
Sbjct: 264 ILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 323

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            RLA  L +P  EAA +++ +  ++  I ++         Q G V +I GRR     I++
Sbjct: 324 ERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 383

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933
               +R   ER A+N  +QGSAAD+ + AMI V  ++   H L  +++ QIHDEL+FEV 
Sbjct: 384 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 443

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           + +I   + ++  +ME         +VPLKV++    +W
Sbjct: 444 DPQIPECAALVRRTMESL------EQVPLKVSLSAGRSW 476


>gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus]
          Length = 2587

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 168/622 (27%), Positives = 273/622 (43%), Gaps = 122/622 (19%)

Query: 469  IKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            I+  K++L   GIS+   +ED  +  ++LD       + SI   +L +    +L+  ++ 
Sbjct: 1966 IQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIVTSFLPH-ELALLEGMETG 2024

Query: 528  IPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
              I  +  +   EH     A   S +I      L   L  E L  ++ +++ P    ++ 
Sbjct: 2025 PGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCLAL 2084

Query: 583  MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-- 640
            +E+ GI       +     +   L ++E   Y L+G  F+ +S   +  +LF +LK P  
Sbjct: 2085 LELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFTSADDIAQVLFLELKLPPN 2144

Query: 641  --------------------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK- 679
                                SG + + G+  +T++D+     G +P+   ILEWR++S  
Sbjct: 2145 GEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLPGLILEWRRISNA 2204

Query: 680  -IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIP------------ 724
              K  +      H+N   R +R++   S + T TGR+   EPN+QN+P            
Sbjct: 2205 ITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEPNIQNVPRDFEIKMPTLVR 2263

Query: 725  -----------IKTDLGQ----------------------------KIRRAFISPPTKKL 745
                           +GQ                             +R AF+  P   +
Sbjct: 2264 ESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMRHAFVPFPGGLI 2323

Query: 746  ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            ++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   +  + V   +R+HAK I 
Sbjct: 2324 LAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDAVGDDLRQHAKQIC 2383

Query: 806  FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
            + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++  T    R+NG+VETI GR
Sbjct: 2384 YGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCRKNGFVETILGR 2443

Query: 866  RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK------ 919
            R +   I       +   ER AIN  +QGSAADI + A +++ K LE  +   K      
Sbjct: 2444 RRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFRSTFKSHGHRE 2503

Query: 920  ---------------------------MLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
                                        +LQ+HDEL++EV EE++   +QI+ + ME A 
Sbjct: 2504 SMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECA- 2562

Query: 953  LPKINLRVPLKVNIKVSNNWQE 974
               I L V LKV +K+  +W E
Sbjct: 2563 ---IKLSVKLKVKVKIGASWGE 2581


>gi|188997399|ref|YP_001931650.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932466|gb|ACD67096.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 299

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 174/289 (60%), Gaps = 7/289 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N + L+DGSS++YRA+YA P L+   DG P  A+ GF  ML K L          + AV
Sbjct: 2   KNKVLLIDGSSYLYRAYYALPPLTA-PDGRPTGAVYGFIRMLLKTLSVFN----TPYVAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD P  T R+E + +YKA R + P+ L  Q+P+++   Q  GI  +EI G+EADDIIAT
Sbjct: 57  AFDLPGKTLRHEKFSEYKATRKETPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  AEKEG+   I++ DKD+ QL+S    +++ VKEE +D E + +K+GI P++ +   
Sbjct: 117 LSKKAEKEGYEAIIVTPDKDMNQLISDNIKIFNPVKEELLDKEKIKEKYGIHPQQFIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-KRRENILEYAETARL 242
            + GD++DNIPGI GIG KTAA LLQE+G+LENIL N  ++K K K     L+  +  R+
Sbjct: 177 TMIGDAVDNIPGIKGIGPKTAAALLQEFGSLENILENVDKLKGKLKESFKELDKEQLQRM 236

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            ++++ L  ++ I I +E L     +  +L    + L F  L+  V  +
Sbjct: 237 -KEIIKLDANIEINIKIEDLKKSKPDLEKLKQIFQELGFKSLLKDVEKS 284


>gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis]
          Length = 241

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/241 (43%), Positives = 157/241 (65%), Gaps = 2/241 (0%)

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+ +      PI+++IL +RQL+K++STY + L   I   T ++HT Y    T TGR
Sbjct: 1   TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTGR 60

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIPI+ + G+KIR+AF+      KL ++DYSQIELR+LAHI+    L + F
Sbjct: 61  LSSVDPNLQNIPIRMEEGRKIRQAFVPQQEGWKLFASDYSQIELRVLAHISGDEHLREAF 120

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               DIH   A  +FG+ N E V+  +RR AK +NF ++YGIS + L+  L I R  A +
Sbjct: 121 LEGQDIHTSTAMHVFGIENPEDVTANLRRQAKAVNFGVVYGISDYGLSQNLNITRKAAQE 180

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF ++PG+ +++E      ++NGYVET+F RR +  +I++   ++R+  ER AIN+
Sbjct: 181 FIDRYFDKYPGVKQFMEDIVKEAKENGYVETLFHRRRYLPDIHNRNFNLRSFAERTAINS 240

Query: 891 P 891
           P
Sbjct: 241 P 241


>gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii]
          Length = 1585

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/468 (30%), Positives = 254/468 (54%), Gaps = 34/468 (7%)

Query: 534  SDSQVQEHAIENSN-VILQLWLLL-RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            S +QVQ    EN++ +I +L L+L  P      L  ++  L+ P+I +++ ME   IQ++
Sbjct: 1075 SSAQVQG---ENADTIIFKLTLILFLPIKQGYGLWQLFCTLELPLIPILAVMESHAIQVN 1131

Query: 592  QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKT 645
            ++ +++ SA +   L  LE+  + ++GE F ++S  QL +ILF KLK        S  +T
Sbjct: 1132 KEEMEKTSALLGARLKELEQEAHFVAGEPFLITSNNQLREILFGKLKLHLLSQRNSLPRT 1191

Query: 646  KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
               ++ +T++ +       +P+ K ILE+RQ+ KIKST+ D L     K +  + + ++ 
Sbjct: 1192 GLQKYPSTSEAVLNALRDFHPLPKIILEYRQVHKIKSTFVDGLLACTKKGS--ISSTWNQ 1249

Query: 706  ASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADY 750
              T+TGRL++  PN+Q I   PI+    +              R  F+S      ++AD+
Sbjct: 1250 TGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKTLTISPRAMFVSSKGHTFLAADF 1309

Query: 751  SQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            SQIELRILAH++    L ++F+ +   D+   + ++   V +E+V+   R   K + +++
Sbjct: 1310 SQIELRILAHLSGDPELLKLFQEAERDDVFSTLTSQWKDVPMEQVTHADREQTKKVVYAV 1369

Query: 809  IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            +YG    RLA  L +P  EAA +++ +  ++  I ++         Q GYV +I GRR  
Sbjct: 1370 VYGAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGYVVSIMGRRRP 1429

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDE 927
               I++    +R   ER A+N  +QGSAAD+ + AMI V  ++   + L  +++ QIHDE
Sbjct: 1430 LPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASRTLTARLVAQIHDE 1489

Query: 928  LVFEVPEEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972
            L+FEV + +I   + ++   + S+E+    ++ L+VPLKV++    +W
Sbjct: 1490 LLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 1537


>gi|148665537|gb|EDK97953.1| polymerase (DNA directed), theta, isoform CRA_c [Mus musculus]
          Length = 2273

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 174/640 (27%), Positives = 280/640 (43%), Gaps = 122/640 (19%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  +     I+  K++L   GIS+   +ED  +  ++LD       + SI 
Sbjct: 1634 SCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIV 1693

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++   I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1694 TSFLPH-ELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1752

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  ++ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1753 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFT 1812

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   +  +LF +LK P                      SG + + G+  +T++D+     
Sbjct: 1813 SADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLK 1872

Query: 663  GDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEP 718
            G +P+   ILEWR++S    K  +      H+N   R +R++   S + T TGR+   EP
Sbjct: 1873 GLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEP 1931

Query: 719  NLQNIP-----------------------IKTDLGQ------------------------ 731
            N+QN+P                           +GQ                        
Sbjct: 1932 NIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGV 1991

Query: 732  ----KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                 +R AF+  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   
Sbjct: 1992 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 2051

Query: 788  VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++ 
Sbjct: 2052 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMR 2111

Query: 848  KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             T    R+NG+VETI GRR +   I       +   ER AIN  +QGSAADI + A +++
Sbjct: 2112 DTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNI 2171

Query: 908  HKSLE-------DHKLATKML--------------------------LQIHDELVFEVPE 934
             K LE        H     ML                          LQ+HDEL++EV E
Sbjct: 2172 QKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAE 2231

Query: 935  EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2232 EDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2267


>gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 144/476 (30%), Positives = 251/476 (52%), Gaps = 31/476 (6%)

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K S    + S + + ++   N  ++  L + L  KL    L  ++  L+ P+I +++ ME
Sbjct: 381 KPSSTFREASRNTLSQNVCMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVME 440

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
              I +D++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF KLK    ++
Sbjct: 441 NHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQ 500

Query: 645 TK----TG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            K    TG   Q  T+   L  +    +P+ K ILE+RQ+ KIKST+ D L  ++ K + 
Sbjct: 501 RKHLPRTGLQNQLSTSEAMLNSLQ-DLHPLPKLILEYRQVHKIKSTFIDGLLAYMKKGS- 558

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPT 742
            + + ++   T+TGRL++  PN+Q I   PIK                   R  F+S   
Sbjct: 559 -ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEG 617

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800
              ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   + IE+V+   R  
Sbjct: 618 HTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQ 677

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K + +S++YG    RLA  L +   EA  +++R+  ++  I ++ +         GYV 
Sbjct: 678 TKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVT 737

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATK 919
           +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++     L  +
Sbjct: 738 SILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTAR 797

Query: 920 MLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++ QIHDEL+FEV + ++   + +   I+ S+++    ++ L+VPLKVN+ V  +W
Sbjct: 798 LVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 853


>gi|30387615|ref|NP_084253.1| DNA polymerase theta isoform 1 [Mus musculus]
 gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus]
 gi|148665535|gb|EDK97951.1| polymerase (DNA directed), theta, isoform CRA_a [Mus musculus]
 gi|187953885|gb|AAI38361.1| Polymerase (DNA directed), theta [Mus musculus]
 gi|187956948|gb|AAI57901.1| Polymerase (DNA directed), theta [Mus musculus]
          Length = 2544

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 174/640 (27%), Positives = 280/640 (43%), Gaps = 122/640 (19%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  +     I+  K++L   GIS+   +ED  +  ++LD       + SI 
Sbjct: 1905 SCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIV 1964

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++   I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1965 TSFLPH-ELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 2023

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  ++ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 2024 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFT 2083

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   +  +LF +LK P                      SG + + G+  +T++D+     
Sbjct: 2084 SADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLK 2143

Query: 663  GDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEP 718
            G +P+   ILEWR++S    K  +      H+N   R +R++   S + T TGR+   EP
Sbjct: 2144 GLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEP 2202

Query: 719  NLQNIP-----------------------IKTDLGQ------------------------ 731
            N+QN+P                           +GQ                        
Sbjct: 2203 NIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGV 2262

Query: 732  ----KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                 +R AF+  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   
Sbjct: 2263 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 2322

Query: 788  VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++ 
Sbjct: 2323 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMR 2382

Query: 848  KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             T    R+NG+VETI GRR +   I       +   ER AIN  +QGSAADI + A +++
Sbjct: 2383 DTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNI 2442

Query: 908  HKSLE-------DHKLATKML--------------------------LQIHDELVFEVPE 934
             K LE        H     ML                          LQ+HDEL++EV E
Sbjct: 2443 QKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAE 2502

Query: 935  EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2503 EDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2538


>gi|148665538|gb|EDK97954.1| polymerase (DNA directed), theta, isoform CRA_d [Mus musculus]
          Length = 2398

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 174/640 (27%), Positives = 280/640 (43%), Gaps = 122/640 (19%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  +     I+  K++L   GIS+   +ED  +  ++LD       + SI 
Sbjct: 1759 SCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIV 1818

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++   I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1819 TSFLPH-ELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1877

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  ++ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1878 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFT 1937

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   +  +LF +LK P                      SG + + G+  +T++D+     
Sbjct: 1938 SADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLK 1997

Query: 663  GDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEP 718
            G +P+   ILEWR++S    K  +      H+N   R +R++   S + T TGR+   EP
Sbjct: 1998 GLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEP 2056

Query: 719  NLQNIP-----------------------IKTDLGQ------------------------ 731
            N+QN+P                           +GQ                        
Sbjct: 2057 NIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGV 2116

Query: 732  ----KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                 +R AF+  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   
Sbjct: 2117 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 2176

Query: 788  VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++ 
Sbjct: 2177 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMR 2236

Query: 848  KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             T    R+NG+VETI GRR +   I       +   ER AIN  +QGSAADI + A +++
Sbjct: 2237 DTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNI 2296

Query: 908  HKSLE-------DHKLATKML--------------------------LQIHDELVFEVPE 934
             K LE        H     ML                          LQ+HDEL++EV E
Sbjct: 2297 QKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAE 2356

Query: 935  EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2357 EDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2392


>gi|226823286|ref|NP_001152841.1| DNA polymerase theta isoform 2 [Mus musculus]
 gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus musculus]
          Length = 2265

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 174/640 (27%), Positives = 280/640 (43%), Gaps = 122/640 (19%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  +     I+  K++L   GIS+   +ED  +  ++LD       + SI 
Sbjct: 1626 SCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIV 1685

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++   I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1686 TSFLPH-ELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1744

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  ++ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1745 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFT 1804

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   +  +LF +LK P                      SG + + G+  +T++D+     
Sbjct: 1805 SADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLK 1864

Query: 663  GDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEP 718
            G +P+   ILEWR++S    K  +      H+N   R +R++   S + T TGR+   EP
Sbjct: 1865 GLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEP 1923

Query: 719  NLQNIP-----------------------IKTDLGQ------------------------ 731
            N+QN+P                           +GQ                        
Sbjct: 1924 NIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGV 1983

Query: 732  ----KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                 +R AF+  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   
Sbjct: 1984 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 2043

Query: 788  VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++ 
Sbjct: 2044 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMR 2103

Query: 848  KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             T    R+NG+VETI GRR +   I       +   ER AIN  +QGSAADI + A +++
Sbjct: 2104 DTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNI 2163

Query: 908  HKSLE-------DHKLATKML--------------------------LQIHDELVFEVPE 934
             K LE        H     ML                          LQ+HDEL++EV E
Sbjct: 2164 QKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAE 2223

Query: 935  EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2224 EDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2259


>gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus]
 gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 144/476 (30%), Positives = 251/476 (52%), Gaps = 31/476 (6%)

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K S    + S + + ++   N  ++  L + L  KL    L  ++  L+ P+I +++ ME
Sbjct: 381 KPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVME 440

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
              I +D++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF KLK    ++
Sbjct: 441 NHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQ 500

Query: 645 TK----TG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            K    TG   Q  T+   L  +    +P+ K ILE+RQ+ KIKST+ D L  ++ K + 
Sbjct: 501 RKHLPRTGLQNQLSTSEAMLNSLQ-DLHPLPKLILEYRQVHKIKSTFIDGLLAYMKKGS- 558

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPT 742
            + + ++   T+TGRL++  PN+Q I   PIK                   R  F+S   
Sbjct: 559 -ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEG 617

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800
              ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   + IE+V+   R  
Sbjct: 618 HTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQ 677

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K + +S++YG    RLA  L +   EA  +++R+  ++  I ++ +         GYV 
Sbjct: 678 TKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVT 737

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATK 919
           +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++     L  +
Sbjct: 738 SILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTAR 797

Query: 920 MLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++ QIHDEL+FEV + ++   + +   I+ S+++    ++ L+VPLKVN+ V  +W
Sbjct: 798 LVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 853


>gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu
          Length = 864

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 144/476 (30%), Positives = 251/476 (52%), Gaps = 31/476 (6%)

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K S    + S + + ++   N  ++  L + L  KL    L  ++  L+ P+I +++ ME
Sbjct: 379 KPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVME 438

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
              I +D++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF KLK    ++
Sbjct: 439 NHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQ 498

Query: 645 TK----TG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            K    TG   Q  T+   L  +    +P+ K ILE+RQ+ KIKST+ D L  ++ K + 
Sbjct: 499 RKHLPRTGLQNQLSTSEAMLNSLQ-DLHPLPKLILEYRQVHKIKSTFIDGLLAYMKKGS- 556

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPT 742
            + + ++   T+TGRL++  PN+Q I   PIK                   R  F+S   
Sbjct: 557 -ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEG 615

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800
              ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   + IE+V+   R  
Sbjct: 616 HTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQ 675

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K + +S++YG    RLA  L +   EA  +++R+  ++  I ++ +         GYV 
Sbjct: 676 TKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVT 735

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATK 919
           +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++     L  +
Sbjct: 736 SILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTAR 795

Query: 920 MLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++ QIHDEL+FEV + ++   + +   I+ S+++    ++ L+VPLKVN+ V  +W
Sbjct: 796 LVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 851


>gi|148665536|gb|EDK97952.1| polymerase (DNA directed), theta, isoform CRA_b [Mus musculus]
          Length = 2119

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 174/640 (27%), Positives = 282/640 (44%), Gaps = 122/640 (19%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  +     I+  K++L   GIS+   +ED  +  ++LD       + SI 
Sbjct: 1480 SCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIV 1539

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++   I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1540 TSFLPH-ELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1598

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  ++ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1599 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFT 1658

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   +  +LF +LK P                      SG + + G+  +T++D+     
Sbjct: 1659 SADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLK 1718

Query: 663  GDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEP 718
            G +P+   ILEWR++S    K  +      H+N   R +R++   S + T TGR+   EP
Sbjct: 1719 GLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEP 1777

Query: 719  NLQNIPI----------------------------------------KTDLGQK------ 732
            N+QN+P                                         +T + +K      
Sbjct: 1778 NIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGV 1837

Query: 733  -----IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                 +R AF+  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   
Sbjct: 1838 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 1897

Query: 788  VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++ 
Sbjct: 1898 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMR 1957

Query: 848  KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             T    R+NG+VETI GRR +   I       +   ER AIN  +QGSAADI + A +++
Sbjct: 1958 DTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNI 2017

Query: 908  HKSLE-------DHKLATKML--------------------------LQIHDELVFEVPE 934
             K LE        H     ML                          LQ+HDEL++EV E
Sbjct: 2018 QKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAE 2077

Query: 935  EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2078 EDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2113


>gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii]
          Length = 241

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/241 (42%), Positives = 156/241 (64%), Gaps = 2/241 (0%)

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+ +      PI+++IL +RQL+K++STY + L   I   T ++HT Y    T TGR
Sbjct: 1   TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTGR 60

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIPI+ + G+KIR+AF+      KL ++DYSQIELR+LAHI+    L + F
Sbjct: 61  LSSVDPNLQNIPIRMEEGRKIRQAFVPQQAGWKLFASDYSQIELRVLAHISGDEHLQEAF 120

Query: 772 ENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               DIH   A  +FG+   E V+  +RR AK +NF ++YGIS + L+  L I R  A +
Sbjct: 121 LEGQDIHTSTAMRVFGIEKPEDVTANLRRQAKAVNFGVVYGISDYGLSQNLNITRKAAQE 180

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF ++PG+ +++E      ++NGYVET+F RR +  +I++   ++R+  ER AIN+
Sbjct: 181 FIDRYFEKYPGVKQFMEDIVKEAKENGYVETLFHRRRYLPDIHNRNFNLRSFAERTAINS 240

Query: 891 P 891
           P
Sbjct: 241 P 241


>gi|168066269|ref|XP_001785063.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663356|gb|EDQ50124.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1683

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 143/465 (30%), Positives = 243/465 (52%), Gaps = 47/465 (10%)

Query: 549  ILQLWLLLRP--KLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
            + Q+W+L     KL+V + LH    +L+ P++ V++ ME   + +D  + ++  + +   
Sbjct: 1216 VAQIWVLHCAFWKLLVAEGLHEALLQLEMPLVRVLADMETWSLGLDMRVCRKAQSHLHCK 1275

Query: 606  LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
            L  LE     L+G  F+LS+P ++  +L+  LK P     K     +T +   +     +
Sbjct: 1276 LRELEAQGEKLAGMSFSLSAPAEVAHVLYRHLKLPVPPGCKGKHHPSTDKQALEFLRNHH 1335

Query: 666  PIIKNILEWRQLSKIKSTYADSL------PNHI---NKRTQRVHTF-----YSLASTMTG 711
            PI   I E R LSK+  +   S+      P  +    +R+ R   F     +   ST TG
Sbjct: 1336 PIADIIKEHRSLSKLLQSTLGSIIAWAKSPEPLFSSQERSSRGEIFSIAGHWLQTSTATG 1395

Query: 712  RLASLEPNLQ----NIPIKTDLGQKI---------------RRAFISPPTKK---LISAD 749
            RL+  +PNLQ     +    + G+ +               R+AF+  P+++   L+SAD
Sbjct: 1396 RLSMEDPNLQCVEHAVSFTIEGGRSLDGDQEKANNVVEVNARQAFV--PSQEGWILLSAD 1453

Query: 750  YSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            YSQIELR++AH +    L  +  + + D+ R++AA+  G+ + +VS + R   K + + I
Sbjct: 1454 YSQIELRLMAHFSGDPSLVSLLSHPTGDLFRVLAAQWTGLPMCEVSDKQRERTKRLVYGI 1513

Query: 809  IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            +YG+    LA  L  P +EA   ++R+   FP +  ++    +  RQ GY+ T+ GR+ +
Sbjct: 1514 LYGMGVNTLAEHLECPVAEAQVMLERFKGTFPLVTTWLSHAVDSCRQKGYITTLSGRKRY 1573

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDE 927
             D+IN+ K   +   ER A+N+  QGSAAD+ + AMI VH ++   H+ + ++LLQIHDE
Sbjct: 1574 LDKINTGKWGEQAKAERQAVNSICQGSAADLIKLAMIKVHDAISSSHQGSCRLLLQIHDE 1633

Query: 928  LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            L+ EV +  +   +QI+  SME A    I LRVPL+  ++V  +W
Sbjct: 1634 LLLEVDKRVLKHVAQILRSSMEGA----ITLRVPLRTKLQVGTSW 1674


>gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus]
          Length = 858

 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 243/454 (53%), Gaps = 28/454 (6%)

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           N  ++ +L + L  KL    L  ++  L+ P+I +++ ME   +Q++++ +++ SA +  
Sbjct: 389 NLRILHRLMMTLCSKLKAYSLWQLFWTLELPLIPILAVMERHSVQVNKEEMERTSALLGA 448

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT---KTGQWKTTAQDLEQIN 661
            L  LE+  + ++GE+F ++S  QL +ILF KLK    ++    KTG  K  +     +N
Sbjct: 449 RLKELEQEAHFVAGERFLITSNNQLREILFDKLKLHLLSQRRLPKTGLQKYPSTSEAVLN 508

Query: 662 CGDN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              +  P+ K ILE+RQ+ KIKST+ D L   +  R   + + ++   T+TGRL++  PN
Sbjct: 509 ALQDLHPLPKIILEYRQVHKIKSTFVDGLLACM--REGSISSTWNQTGTVTGRLSAKHPN 566

Query: 720 LQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELRILAHIAKI 764
           +Q I   PI     Q              R  F+S      ++AD+SQIELRILAH++  
Sbjct: 567 IQGISRHPIHITKPQNTKGKEDEILTISPRAMFVSSAGHTFLAADFSQIELRILAHLSGD 626

Query: 765 TPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
             L ++F  S   D+   + ++   + +E V+   R   K + +S++YG    RLA  L 
Sbjct: 627 AELLKLFHESEREDVFSTLTSQWKNMPVEHVTHVDREQTKKVVYSVVYGAGKERLAACLG 686

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +   EAA +++ +  ++  I ++ +       Q GYV ++ GRR     I + +  +R  
Sbjct: 687 VAVPEAARFLETFLQKYKKISDFAQAAIAQCHQRGYVTSVTGRRRPLPRICAQEPHLRAQ 746

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTAS 941
            ER A+N  +QGSAAD+ + AMI +  ++     L  +++ QIHDEL+FEV + +I   +
Sbjct: 747 AERQAVNFVVQGSAADLCKMAMIRIFAAVSSSPTLTARLVAQIHDELLFEVEDAQIPEFA 806

Query: 942 QII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++   + S+++    ++ L+VPLKV++ V  +W
Sbjct: 807 ALVRGTMESLQQVPALELQLQVPLKVSLSVGRSW 840


>gi|194742333|ref|XP_001953657.1| GF17871 [Drosophila ananassae]
 gi|190626694|gb|EDV42218.1| GF17871 [Drosophila ananassae]
          Length = 2135

 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 165/589 (28%), Positives = 286/589 (48%), Gaps = 65/589 (11%)

Query: 418  DDTSFKVETIFIDLSVH-TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLV 475
            D  SF V++ ++   VH   Q+  G+   T   L  + K F       + H  K   K++
Sbjct: 1570 DCLSFCVDSHYV---VHFKMQEEKGRGVSTSLKLQEISKIFARTDLTLVMHKTKDQLKVI 1626

Query: 476  LHRY----GISMRGFEDIMLMSYVLDSGRSSH-------------DIASIAQKWLSYTRK 518
            L        I+++ FED  + S+++   R+               ++ ++    L YT  
Sbjct: 1627 LQAIPELKTIAVK-FEDPNVASWLMQPDRNCSFQNMCQQYAPECLNLLNLCGSGLGYT-- 1683

Query: 519  EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
                    S  +D  S+   Q  A   + V + +       L   + + V+   + P+  
Sbjct: 1684 --------SYGLDASSEVSAQVRAQVEACVSVHILNGQMKSLEEHQFIKVFRDNEMPLCL 1735

Query: 579  VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
            +++QME+ G  + +  L  + ++I+ ++  LE  I++L+G +FN++S + +  +L    K
Sbjct: 1736 ILAQMEVIGFPVKEHRLGNLISQIAGSMKKLEAKIFELNGSRFNINSSQAVAKVLGIHRK 1795

Query: 639  FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                    TG+  T+ + LE++   + PI   I ++R+L+ +       L         R
Sbjct: 1796 -------PTGRVSTSREVLERL---EAPIANLICQYRKLNALLVKNVQPLMKCC--LNNR 1843

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--------PPTKKLISADY 750
            +H  +S+ +T TGR++  EPNLQN+     +  + R A +S          T+ L+SAD+
Sbjct: 1844 IHG-HSITNTATGRISMAEPNLQNVAKNFVVDVQDRGAIVSCRSAFMPMDSTRCLLSADF 1902

Query: 751  SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
             Q+E+RILAH+++   L     +  DI   ++A    +N  +VS Q+R   K I + IIY
Sbjct: 1903 CQLEMRILAHLSQDKALVAAMNSPRDIFTSISAHWHRMNESEVSDQLREGTKKICYGIIY 1962

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            G+S  +LA +L +   EA    +++   +PGI  Y  +   + R  GYVETI GRR + +
Sbjct: 1963 GMSMRKLADELNVTEQEAEVLSEQFHSNYPGIRSYTNRLIKYARHKGYVETITGRRRYLE 2022

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH--KL-----ATKMLLQ 923
             I S  +  R   ER A+N+ IQGSAADI + A+I   K +  H  KL     +  ++L 
Sbjct: 2023 NIRSEDAGTRKKAERQAVNSTIQGSAADIAKVAIIKSVKYMRRHCQKLFIDENSVNLVLH 2082

Query: 924  IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            IHDEL+FEVP ++    ++++   ME +      L VPLKV +K+ + W
Sbjct: 2083 IHDELMFEVPADKAKKIAKLLKVVMEASA----RLTVPLKVKLKMGSCW 2127


>gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
 gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
          Length = 642

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 163/572 (28%), Positives = 270/572 (47%), Gaps = 42/572 (7%)

Query: 440 TGKNTL-TKEILSYLKKF-FENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVL 496
            GKN      ++++LK F F NE  +K+ HNI ++   L+ YGI ++    D ML S + 
Sbjct: 75  NGKNVEDVHRMIAWLKGFVFHNESLIKVAHNIAFESSFLYEYGIVIKEPVFDTMLGSML- 133

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-------IDKISDSQVQ--EHAIENSN 547
            + +S  +  ++ +  L    KEI      S          D +     +   +A  +S+
Sbjct: 134 -TFKSFGEFRTLRECGLKLLAKEIFNEDLPSFSHVVNGTHFDNLHSEHKETVRYACADSD 192

Query: 548 VILQL--WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             L+L  W L   +  + +   V ER++ P       M+  GI ++++LL++ +    + 
Sbjct: 193 YALRLYNWCLEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEE 252

Query: 606 LLSLEENIYDLSGEKFNLSSPKQ---LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN- 661
           L   +  I   +  + NL S  Q     D LF  L+ P     + G+     + L  ++ 
Sbjct: 253 LEFCKREILSFANREVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGEPSLDDESLILLDE 312

Query: 662 -CGDN-----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            C  N      +I+ I   +++SK+KSTY ++L   +N  T ++HT +    T TGR +S
Sbjct: 313 WCLRNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDFFSMGTETGRFSS 372

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             PNLQN+P K +    IR+ FI  P    +  D+SQIELR+ A+  +   +   F    
Sbjct: 373 RNPNLQNLPRKDNDHLGIRKLFIPSPNHVFLDFDFSQIELRVGAYYCRDRKMINAFMKDF 432

Query: 776 DIHRMVAAEIFGVNIEKVS-------PQMRRHAKTINFSIIYGISPFRLATQL------R 822
           DIH +  + I+ + +E+ +        + R  AK  NF + +G+ P  L   L       
Sbjct: 433 DIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNFGVFFGLFPKGLQKTLMYKGGIN 492

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I   +    I+     +P +  + + T       GY  +  GRR +  +I S   + R +
Sbjct: 493 ISEKDCERIIRNIKDGYPRLSTWQKDTVKVAAYRGYTRSRTGRRRYLKDIKSKDWNKRAV 552

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
           +ER A+N PIQG+AADI + AM  + + L + +   K LLQIHDEL+FEV E+++  A  
Sbjct: 553 SERCALNTPIQGTAADIIKIAMARILRELPEREY-IKPLLQIHDELLFEVREDKVNEAIA 611

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I   ME+   P  +  +PLKV   V  N+ E
Sbjct: 612 FIKDCMERT--PFKDFNIPLKVEYSVGYNFDE 641


>gi|237756074|ref|ZP_04584652.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691767|gb|EEP60797.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 299

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/289 (39%), Positives = 173/289 (59%), Gaps = 7/289 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N + L+DGSS++YRA+YA P L+   DG P  A+ GF  ML K L          + AV
Sbjct: 2   KNKVLLIDGSSYLYRAYYALPPLTA-PDGRPTGAVYGFIRMLLKTLSVFN----TPYVAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD P  T R+E + +YKA R + P+ L  Q+P+++   Q  GI  +EI G+EADDIIAT
Sbjct: 57  AFDLPGKTLRHEKFSEYKATRKETPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  AE EG+   I++ DKD+ QL+S    +++ VKEE +D E + +K+GI P++ +   
Sbjct: 117 LSKKAEIEGYEAIIVTPDKDMNQLISDNIKIFNPVKEELLDKEKIKEKYGIYPQQFIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY-AETARL 242
            + GD++DNIPGI GIG KTAA LLQE+G+LENIL N  ++K  K +E+  E   E  + 
Sbjct: 177 TMIGDAVDNIPGIKGIGPKTAAALLQEFGSLENILENVDKLKG-KLKESFKEVDKEQLQR 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            ++++ L  ++ I I +E L     +  +L    + L F  L+  V  +
Sbjct: 236 MKEIIKLDANIEINIKIEDLKKSKPDLEKLKQIFQELGFKSLLKDVEKS 284


>gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 645

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 159/554 (28%), Positives = 260/554 (46%), Gaps = 53/554 (9%)

Query: 440 TGKNTLTKE-ILSYLKK-FFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYV 495
           TGKN  + + I+ +L +  F N   +KI HN+ ++ + L+  G+ ++   ++ I      
Sbjct: 70  TGKNAGSPDKIMQWLSENVFANRKVVKIAHNLSFEAMFLYALGVVLQPPCYDTIAAALMT 129

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKIS--DSQVQEHAIENSNVI 549
           L S  +   +A    K L+     +     ++  +    D++   D +   +A  +S+  
Sbjct: 130 LKSNTAFRTLADSGLKTLTQELFGVDLPSFETVTAGRYFDELDPQDEETVRYACADSDYT 189

Query: 550 LQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L+L+ L        + K   + E+L+ P       M+  G+  D++L+ +  AE    L 
Sbjct: 190 LRLYHLFNNWFNRYLPKHRFIVEKLESPAAVYCGLMKYNGLLADEELMLKKQAEAEGKLA 249

Query: 608 SLEENIYDLSGEKFNL---SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN--- 661
            L  NI  L G+  N+   +S       L+  LK P         +KTTA+  E ++   
Sbjct: 250 ELRGNIAFLIGD-VNIGANASTSAFKKYLYDDLKLPV--------FKTTAKYQEAMDDEA 300

Query: 662 -------CGDN-----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
                  C +N      + + + E+R+  KIKSTY D    +IN  T R+H       T 
Sbjct: 301 MILLSEWCRENRPELAELFELVQEYRRWGKIKSTYIDGYLEYINSVTGRIHPDMFPLGTE 360

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGR A+  PNLQN P K +    +R  FI+P  K L+S D+SQIELR+ A   +   + +
Sbjct: 361 TGRFAARNPNLQNCPRKDNDPVGVRNFFIAPKGKALLSLDFSQIELRVGAFYCRDERMLE 420

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRH-------AKTINFSIIYGISP------FR 816
            +    DIH    + I+ +  E+ + +  +H       AK  NF + YG+ P       +
Sbjct: 421 TYRTGGDIHAQTTSVIYRIPFEEAADKSAQHYKERRAIAKNCNFGVFYGLFPKGLHRNLK 480

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
               L  P SE    I      +P + ++ EKTK       Y ET  GRR +  +I S  
Sbjct: 481 FKAGLDTPLSECERIIANLKAGYPRLVQWQEKTKKRAASRRYTETWLGRRRYLPDIASSD 540

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
              ++  ER A+N PIQG+AADI + A+  + + L   ++  + +LQIHDELVFEVPE++
Sbjct: 541 WGKKSFAERCALNTPIQGTAADILKLALGRIIEGLP-QRMRLRPVLQIHDELVFEVPEDK 599

Query: 937 ITTASQIIVHSMEK 950
           +  A+  I   ME+
Sbjct: 600 VHEAAVFIKSCMEE 613


>gi|145334203|ref|NP_001078482.1| DNA-directed DNA polymerase family protein [Arabidopsis thaliana]
 gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis
            thaliana]
 gi|332660705|gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana]
          Length = 2154

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/453 (30%), Positives = 238/453 (52%), Gaps = 44/453 (9%)

Query: 560  LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
            L+ E+LL     ++ P+++V++ ME+ GI ID +   +    +   L SLE+  ++L+G 
Sbjct: 1697 LVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKAFELAGM 1756

Query: 620  KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK-TTAQDLEQINCGDNPIIKNILEWRQLS 678
             F+L +P  + ++LF +LK P       G+   +T +    +   ++P++  I E R L+
Sbjct: 1757 TFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLA 1816

Query: 679  KIKSTYADSLPNHINKR--TQR--VHTFYSLASTMTGRLASLEPNLQNIPIKTDL----- 729
            K+ +    S+ +    R  TQR  +H  +   ST TGRL+  EPNLQ++  + +      
Sbjct: 1817 KLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPNLQSVEHEVEFKLDKN 1876

Query: 730  GQKIR----------RAFISPPTKK--LISADYSQIELRILAHIAKITPL-YQVFENSLD 776
            G+ +           R F  P  +   L++ADYSQIELR++AH ++ + L  ++ +   D
Sbjct: 1877 GRDVSSDADRYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGD 1936

Query: 777  IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            +  M+AA+  G   + VSP  R   K + + I+YG+   RLA QL     EA + I+ + 
Sbjct: 1937 VFTMIAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMGANRLAEQLECTSDEAKEKIRSFK 1996

Query: 837  HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
              FP +  ++ +T +F ++ GY++T+ GRR    +I    +  ++  +R A+N+  QGSA
Sbjct: 1997 SSFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSA 2056

Query: 897  ADITRRAMISVHKSLEDH-----------------KLATKMLLQIHDELVFEVPEEEITT 939
            ADI + AMI+++ ++ +                  K   ++LLQ+HDELV EV    +  
Sbjct: 2057 ADIIKIAMINIYSAIAEDVDTAASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKL 2116

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            A+ ++  SME A    ++L VPL V +KV   W
Sbjct: 2117 AAMLLQTSMENA----VSLLVPLHVKLKVGKTW 2145


>gi|301762338|ref|XP_002916602.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Ailuropoda
           melanoleuca]
          Length = 1040

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 153/549 (27%), Positives = 278/549 (50%), Gaps = 59/549 (10%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            GH+  + K V+H  G+      D  + ++++D G ++     +  K+L     E   S 
Sbjct: 325 FGHDGSW-KHVVHFVGL------DPRIAAWLIDPGDAAPSFEDLVAKYL-----ESSISV 372

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K +      S + V ++   N  ++ +L + L  +L V  L  ++  L+ P+I +++ ME
Sbjct: 373 KVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKVYGLWQLFCTLELPLIPILAVME 432

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP---- 640
              IQ+D++ +++ SA +   L  LE+  + ++GE+F ++S  QL ++LF KLK P    
Sbjct: 433 SHSIQVDREEMERTSALLGSRLKELEQEAHFVAGEQFLITSNNQLREVLFGKLKLPLLSP 492

Query: 641 --SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
             +  +T   +  +T++ + +     +P+ K ILE+R++ K KS + D L   + K +  
Sbjct: 493 RETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYRRVHKTKSAFVDGLLACMRKGS-- 550

Query: 699 VHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTK 743
           + + ++   T+TGRL++  PN+Q I   PI+    Q              R  F++P   
Sbjct: 551 ISSTWNQTGTVTGRLSARHPNIQGISKHPIQITKPQNFKGVEGAMLTISPRSMFVAPEGH 610

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHA 801
             ++AD+SQIELRILAH++    L ++F+ S   D+   + ++  GV  E V+   R   
Sbjct: 611 TFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKGVPPEHVTHADREQT 670

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K + +S +YG    RLA  L +   EAA +++ +  ++  + ++++ T     Q GYV +
Sbjct: 671 KKVVYSAVYGAGKERLAACLGVTVQEAAWFLESFLQKYKKVKDFVQTTIAQCHQTGYVAS 730

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKM 920
           I GRR     + +    +R   ER A+N  +QGSAAD+ + AMI V  ++     L  ++
Sbjct: 731 IMGRRRPLPRVRAQDQQLRAQAERQAVNFVVQGSAADLCKMAMIRVFAAVAASPTLTARL 790

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR-----------------VPLK 963
           + QIHDEL+FEV + +I   + ++  +ME       N+R                 VPLK
Sbjct: 791 VAQIHDELLFEVDDSQIPELAALVRGTMESL----RNVRALELQNRLTPREQDPEVVPLK 846

Query: 964 VNIKVSNNW 972
           V++   ++W
Sbjct: 847 VSLSAGHSW 855


>gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 2147

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 137/453 (30%), Positives = 236/453 (52%), Gaps = 44/453 (9%)

Query: 560  LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
            L+ E+LL      + P+++V++ ME+ GI +D +   +    +   L SLE+  ++L+G 
Sbjct: 1690 LVSEELLEALTTTEMPLVNVLADMELWGIGVDIEGCLRARNILRDKLRSLEKKAFELAGM 1749

Query: 620  KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK-TTAQDLEQINCGDNPIIKNILEWRQLS 678
             F+L +P  + ++LF +LK P       G+   +T +    +   ++P++  I E R L+
Sbjct: 1750 TFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLA 1809

Query: 679  KIKSTYADSLPNHINKR--TQR--VHTFYSLASTMTGRLASLEPNLQNIPIKTDL----- 729
            K+ +    S+ +    R  TQR  +H  +   ST TGRL+  EPNLQ++  + +      
Sbjct: 1810 KLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPNLQSVEHEVEFILDKN 1869

Query: 730  GQKIR----------RAFISPPTKK--LISADYSQIELRILAHIAKITPL-YQVFENSLD 776
            G+ +           R F  P  +   L++ADYSQIELR++AH ++ + L  Q+ +   D
Sbjct: 1870 GKDVNSDADSYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISQLRQPEGD 1929

Query: 777  IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            +  M+AA+  G     VSP  R   K + + I+YG+   RLA QL     EA + I+ + 
Sbjct: 1930 VFTMIAAKWTGKAEGSVSPHDRDQTKRLIYGILYGMGANRLAEQLECSSDEAKEKIRSFK 1989

Query: 837  HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
              FP +  ++ +T +F ++ GY++T+ GRR    +I    +  ++  +R A+N+  QGSA
Sbjct: 1990 SSFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSA 2049

Query: 897  ADITRRAMISVHKSLEDH-----------------KLATKMLLQIHDELVFEVPEEEITT 939
            ADI + AMI+++ ++ +                  K   ++LLQ+HDELV EV    +  
Sbjct: 2050 ADIIKIAMINIYSAIAEDVDTTASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKV 2109

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            A+ ++  SME A    ++L VPL V +KV   W
Sbjct: 2110 AAMLLQTSMENA----VSLLVPLHVKLKVGKTW 2138


>gi|242083352|ref|XP_002442101.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
 gi|241942794|gb|EES15939.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
          Length = 917

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 156/533 (29%), Positives = 259/533 (48%), Gaps = 60/533 (11%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA----I 543
           DI L+++VL     S  + ++ +    + ++ +     ++   D    +Q+ + A     
Sbjct: 386 DICLLAWVLWPDEESRTVPNLEK----FVKRRLHSEAAAAANRDGRWRNQMHKAAHNGCC 441

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             S     L+ +L+ KL+ + L  + E ++ P+++V++ ME+ GI  D D        I+
Sbjct: 442 RRSAQTRALYTVLK-KLLTQNLSDLVETIEAPLVNVLADMELWGIGADMDACLHARHIIT 500

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW--KTTAQDLEQIN 661
           K L  LE+  Y L+G+ F+L++   + DIL+  LK P     + G+    T  Q L+ + 
Sbjct: 501 KKLKELEKEAYRLAGKNFSLNATADIADILYVHLKLPVPKGCEKGKLHPSTDKQSLDHLR 560

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR----VHTFYSLASTMTGRLASLE 717
              +PII  I E R L+K+ +    S+ +     TQ     +H  +   ST TGRL+  E
Sbjct: 561 -DQHPIIPVIKEHRTLAKLLNGTLWSICSRAQLCTQSQRYIIHGNWLQTSTATGRLSMEE 619

Query: 718 PNLQNIP--IKTDLGQK---------------IRRAFISPPTKK---LISADYSQIELRI 757
           PNLQ +   ++ D G+                +R  FI  PTK+    ++ADYSQIELR+
Sbjct: 620 PNLQCVEHLVEFDTGKSNKDYCMSVDDHHKINVRDFFI--PTKENWLFVTADYSQIELRL 677

Query: 758 LAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +AH +K   L ++      D+  M+A+         +S + R + K + + I+YG+    
Sbjct: 678 MAHFSKDPTLVELLSKPDGDVFTMIASRWADKEEALISSKERENTKRLIYGILYGMGANS 737

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL     +AA  I+ +   FPG+  ++ +     RQ GYVET+ GRR    +I +  
Sbjct: 738 LAEQLECSTEDAAQKIQSFRRLFPGVSSWLHEVVLSCRQKGYVETLLGRRRFLTKITAGN 797

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-----------------K 919
           S  +   +R A+N+  QGSAADI + AMI +H  + +   AT                  
Sbjct: 798 SKEKAKAQRQAVNSICQGSAADIIKVAMIRLHSVITNRTRATDSTDEVTRKFSEFGGQCH 857

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++LQ+HDELV EV    +  A +++   ME+A     +L VPL+  IKV   W
Sbjct: 858 LILQVHDELVLEVVPCMVAQAGRLLQICMEEA----ASLLVPLRTKIKVGKTW 906


>gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster]
 gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster]
          Length = 2059

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 224/425 (52%), Gaps = 32/425 (7%)

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            LL  +  ++ P+   + QME+ G    +  L+Q+   +   +  +E  IY+  G +FNL 
Sbjct: 1646 LLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLG 1705

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            S + +  +L    K         G+  T+ Q LE++N   +PI   IL +R+LS + +  
Sbjct: 1706 SSQAVAKVLGLHRK-------AKGRVTTSRQVLEKLN---SPISHLILGYRKLSGLLAKS 1755

Query: 685  ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTDLGQKIRRAFI 738
               L      +  R+H   S+  T TGR++  EPNLQN      I + +D+     R+  
Sbjct: 1756 IQPLMECC--QADRIHG-QSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHISCRSPF 1812

Query: 739  SPP--TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
             P   ++ L+SAD+ Q+E+RILAH+++   L +V ++S D+   +AA    +   +V+  
Sbjct: 1813 MPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQD 1872

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R   K + + I+YG+    LA  L     EA     ++   + GI +Y  +  NF R  
Sbjct: 1873 LRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSK 1932

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-- 914
            G+VETI GRR + + INS    ++N  ER A+N+ IQGSAADI + A++ + K++E +  
Sbjct: 1933 GFVETITGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIERYRE 1992

Query: 915  KLA-----TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            KLA       +++ +HDEL+FEVP  +    ++++  +ME      + L VPLKV +++ 
Sbjct: 1993 KLALGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENC----VKLSVPLKVKLRIG 2048

Query: 970  NNWQE 974
             +W E
Sbjct: 2049 RSWGE 2053


>gi|198451642|ref|XP_001358456.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
 gi|198131580|gb|EAL27595.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
          Length = 2054

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 148/455 (32%), Positives = 233/455 (51%), Gaps = 36/455 (7%)

Query: 541  HAIENSNVIL-QLWLLLRPKLIVEKLLHVYERLDK-----PMIDVVSQMEITGIQIDQDL 594
            H +++S+ IL +L   +   + V  L    E L++     P+  V+ +ME  G       
Sbjct: 1609 HGLDSSSAILPKLRASIEACVTVHILKGQIENLERIEVEMPIQIVLCRMECVGFPAKHQR 1668

Query: 595  LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
            + ++   +   L  +E  IY + G KFNL S + + ++L    K         G+  T+ 
Sbjct: 1669 MGRLIKHMLDTLNKVEIKIYKMHGSKFNLGSTQAVANVLGLHRK-------PHGRVSTSR 1721

Query: 655  QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            Q LE++    +PI + IL  R+L+          P     +  R+H  +S+  T TGR++
Sbjct: 1722 QVLEKLG---SPISELILNHRKLNM--QIVKGMQPLIRCCKANRIHG-HSITHTATGRIS 1775

Query: 715  SLEPNLQNIPIKTDLGQ-------KIRRAFISPPTKK-LISADYSQIELRILAHIAKITP 766
              EPNLQN+    D+           R  F S   K+ L+SAD+ Q+E+RILAH+++   
Sbjct: 1776 MSEPNLQNVAKDFDIRMGPDSVRISCRSVFKSMDEKRCLLSADFCQLEMRILAHLSQDKA 1835

Query: 767  LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            L  V  +  D+   +AA    +   +V+ QMR   K I + I+YG+    L   L+   S
Sbjct: 1836 LVSVMNSPQDLFTAIAAHWNHIPEAEVTEQMRSGTKQICYGIVYGMGMRSLGDALQCTES 1895

Query: 827  EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            EA    +++   +PGI  Y EK   F R+ GYVETI GRR + D INS + ++    ER 
Sbjct: 1896 EAQLICEQFHQSYPGIRAYTEKVLKFARKLGYVETITGRRRYLDHINSGEQNLIKQAERQ 1955

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDH--KLAT-----KMLLQIHDELVFEVPEEEITT 939
            A+N  IQGSAADI +RA++ + K++  +  KL       +++L IHDELV+EVPE +   
Sbjct: 1956 AVNTTIQGSAADIAKRAILDMDKNIGRYWKKLGVEENSIQLVLHIHDELVYEVPEAKAKR 2015

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++ +  +ME   + K  L VPLKV IK+  +W E
Sbjct: 2016 IAKFLGLTMES--IGKGKLTVPLKVKIKMGESWGE 2048


>gi|195145962|ref|XP_002013959.1| GL23113 [Drosophila persimilis]
 gi|194102902|gb|EDW24945.1| GL23113 [Drosophila persimilis]
          Length = 2193

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 148/455 (32%), Positives = 233/455 (51%), Gaps = 36/455 (7%)

Query: 541  HAIENSNVIL-QLWLLLRPKLIVEKLLHVYERLDK-----PMIDVVSQMEITGIQIDQDL 594
            H +++S+ IL +L   +   + V  L    E L++     P+  V+ +ME  G       
Sbjct: 1748 HGLDSSSAILPKLRASIEACVTVHILKGQIENLERIEVEMPIQIVLCRMECVGFPAKHQR 1807

Query: 595  LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
            + ++   +   L  +E  IY + G KFNL S + + ++L    K         G+  T+ 
Sbjct: 1808 MGRLIKHMLDTLNKVEIKIYKMHGSKFNLGSTQAVANVLGLHRK-------PHGRVSTSR 1860

Query: 655  QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            Q LE++    +PI + IL  R+L+          P     +  R+H  +S+  T TGR++
Sbjct: 1861 QVLEKLG---SPISELILNHRKLNM--QIVKGMQPLIRCCKANRIHG-HSITHTATGRIS 1914

Query: 715  SLEPNLQNIPIKTDLGQ-------KIRRAFISPPTKK-LISADYSQIELRILAHIAKITP 766
              EPNLQN+    D+           R  F S   K+ L+SAD+ Q+E+RILAH+++   
Sbjct: 1915 MSEPNLQNVAKDFDIRMGPDSVRISCRSVFKSMDEKRCLLSADFCQLEMRILAHLSQDKA 1974

Query: 767  LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            L  V  +  D+   +AA    +   +V+ QMR   K I + I+YG+    L   L+   S
Sbjct: 1975 LVSVMNSPQDLFTAIAAHWNHIPEAEVTEQMRSGTKQICYGIVYGMGMRSLGDALQCTES 2034

Query: 827  EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            EA    +++   +PGI  Y EK   F R+ GYVETI GRR + D INS + ++    ER 
Sbjct: 2035 EAQLICEQFHQSYPGIRAYTEKVLKFARKLGYVETITGRRRYLDHINSGEQNLIKQAERQ 2094

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDH--KLAT-----KMLLQIHDELVFEVPEEEITT 939
            A+N  IQGSAADI +RA++ + K++  +  KL       +++L IHDELV+EVPE +   
Sbjct: 2095 AVNTTIQGSAADIAKRAILDMDKNIGRYWKKLGVEENSIQLVLHIHDELVYEVPEAKAKR 2154

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++ +  +ME   + K  L VPLKV IK+  +W E
Sbjct: 2155 IAKFLGLTMES--IGKGKLTVPLKVKIKMGESWGE 2187


>gi|291400571|ref|XP_002716686.1| PREDICTED: DNA polymerase theta isoform 1 [Oryctolagus cuniculus]
          Length = 2585

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   G+S+ + FED  +  ++LD       + SI 
Sbjct: 1945 SCLQKASDKERSVIIYDFIRSYKILLLSCGVSLEQSFEDPKVACWLLDPDSKEPTLHSIV 2004

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L      +L+  ++   I  +  +   EH     A   S +I      L   L  EK
Sbjct: 2005 TSFLP-CELPLLEEMETGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNALLQKEK 2063

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  ++ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 2064 LQDIFHKVEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHSFSFT 2123

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                       G K K G+  +T++D+     
Sbjct: 2124 SSDDIAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLK 2183

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R +R++ F  +        + T TGR+ 
Sbjct: 2184 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2238

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
             +EPN+QN+P      + T +G+                                     
Sbjct: 2239 FIEPNIQNVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERA 2298

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +A
Sbjct: 2299 SDRGIPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIA 2358

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2359 AEWRMMEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2418

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            + ++++T    R++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2419 NHFMKETVKNCRRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKI 2478

Query: 903  AMISVHKSLEDHKLATK---------------------------------MLLQIHDELV 929
            A +++ K LE      K                                  +LQ+HDEL+
Sbjct: 2479 ATVNIQKQLETFHSTFKSHGHREGVLQSDKTGLFPKRRLPGVFCPVRGGFFILQLHDELL 2538

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2539 YEVAEEDVVQVAQIVKNEMENA----IKLSVKLKVKVKIGASWGE 2579


>gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster]
          Length = 2059

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/425 (30%), Positives = 223/425 (52%), Gaps = 32/425 (7%)

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            LL  +  ++ P+   + QME+ G    +  L+Q+   +   +  +E  IY+  G +FNL 
Sbjct: 1646 LLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLG 1705

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            S + +  +L    K         G+  T+ Q LE++N   +PI   IL +R+LS + +  
Sbjct: 1706 SSQAVAKVLGLHRK-------AKGRVTTSRQVLEKLN---SPISHLILGYRKLSGLLAKS 1755

Query: 685  ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTDLGQKIRRAFI 738
               L      +  R+H   S+  T TGR++  EPNLQN      I + +D+     R+  
Sbjct: 1756 IQPLMECC--QADRIHG-QSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHISCRSPF 1812

Query: 739  SPP--TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
             P   ++ L+SAD+ Q+E+RILAH+++   L +V ++S D+   +AA    +   +V+  
Sbjct: 1813 MPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQD 1872

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R   K + + I+YG+    LA  L     EA     ++   + GI +Y  +  NF    
Sbjct: 1873 LRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFAHSK 1932

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-- 914
            G+VETI GRR + + INS    ++N  ER A+N+ IQGSAADI + A++ + K++E +  
Sbjct: 1933 GFVETITGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIERYRE 1992

Query: 915  KLA-----TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            KLA       +++ +HDEL+FEVP  +    ++++  +ME      + L VPLKV +++ 
Sbjct: 1993 KLALGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENC----VKLSVPLKVKLRIG 2048

Query: 970  NNWQE 974
             +W E
Sbjct: 2049 RSWGE 2053


>gi|291400573|ref|XP_002716687.1| PREDICTED: DNA polymerase theta isoform 2 [Oryctolagus cuniculus]
          Length = 2306

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   G+S+ + FED  +  ++LD       + SI 
Sbjct: 1666 SCLQKASDKERSVIIYDFIRSYKILLLSCGVSLEQSFEDPKVACWLLDPDSKEPTLHSIV 1725

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L      +L+  ++   I  +  +   EH     A   S +I      L   L  EK
Sbjct: 1726 TSFLP-CELPLLEEMETGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNALLQKEK 1784

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  ++ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1785 LQDIFHKVEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHSFSFT 1844

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                       G K K G+  +T++D+     
Sbjct: 1845 SSDDIAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLK 1904

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R +R++ F  +        + T TGR+ 
Sbjct: 1905 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 1959

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
             +EPN+QN+P      + T +G+                                     
Sbjct: 1960 FIEPNIQNVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERA 2019

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +A
Sbjct: 2020 SDRGIPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIA 2079

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2080 AEWRMMEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2139

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            + ++++T    R++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2140 NHFMKETVKNCRRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKI 2199

Query: 903  AMISVHKSLEDHKLATK---------------------------------MLLQIHDELV 929
            A +++ K LE      K                                  +LQ+HDEL+
Sbjct: 2200 ATVNIQKQLETFHSTFKSHGHREGVLQSDKTGLFPKRRLPGVFCPVRGGFFILQLHDELL 2259

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2260 YEVAEEDVVQVAQIVKNEMENA----IKLSVKLKVKVKIGASWGE 2300


>gi|332225568|ref|XP_003261953.1| PREDICTED: DNA polymerase theta, partial [Nomascus leucogenys]
          Length = 2473

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1833 SCLRKESDKERSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1892

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1893 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1951

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+L+
Sbjct: 1952 LQDVFRKVEMPSQYCLALLELNGIGFSAAECESQKHIMQAKLDAIETQAYQLAGHSFSLT 2011

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 2012 SSDDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLK 2071

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R +R++ F  +        + T TGR+ 
Sbjct: 2072 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2126

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
             +EPN+QN+P      + T +G+                                     
Sbjct: 2127 FIEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYTKGCSLNPRCQAQMEERA 2186

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L Q      D+ R +A
Sbjct: 2187 ADRGMPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQALNTGADVFRSIA 2246

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2247 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2306

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2307 NQFMRETVKNCKRDGFVQTILGRRRYLPGIEDNNPYHKAHAERQAINTTVQGSAADIVKI 2366

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2367 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2426

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2427 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2467


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 151/544 (27%), Positives = 286/544 (52%), Gaps = 38/544 (6%)

Query: 441  GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG 499
            G+N L K    +LKK F+++  +K+ HN K+D   L  YG    G   D M+ S +L + 
Sbjct: 1271 GRNELIK--CEWLKKLFKSKETVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKLLVAS 1328

Query: 500  RS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            R  S  +  +++++L+    +    + S     ++ + Q+  ++  +S V+L L+++L  
Sbjct: 1329 RYISCKLTHVSERYLNIVLDKT--QQYSDWSTLQLFEEQLL-YSARDSFVLLPLYVILEH 1385

Query: 559  KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LS 617
             L +  L  +    +K ++   S ME+ GIQ+D+D LK +  E+ +    +   +Y  L+
Sbjct: 1386 LLKINNLSDIASVENKCIL-ATSDMELNGIQVDEDKLKFLQDELKQEHQEISNTLYSQLN 1444

Query: 618  GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
              + NL+S KQ+ + L  +LK    +K K     + +  +  ++   NPII ++ E+R+ 
Sbjct: 1445 QSEINLNSQKQVLEKL-QELKIMDKSKKKIISDTSESTLIRNMS---NPIISSLREYRKA 1500

Query: 678  SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            +K  + +   LPNHIN  T+R++  Y+     +GR +   PNLQ +P      +K R  F
Sbjct: 1501 NKALTAFTQKLPNHINPITKRIYPNYNQLGAESGRFSCDGPNLQQVP----RDKKFRECF 1556

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            ++P   K + AD+SQIELRI A IA    + Q ++  +D+H + A+ +   NI  V+ + 
Sbjct: 1557 VAPKGSKFVIADFSQIELRIAAEIANDPKMIQAYQQKVDLHSLTASILKNKNINDVNKEE 1616

Query: 798  RRHAKTINFSIIYGIS--PFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            R+ AK +NF +I+G+S    R+  +    L++ ++EA +    +F+ F GI  +    KN
Sbjct: 1617 RQLAKAVNFGLIFGMSINGLRMYAETGYNLKLTQNEAKEIYTSFFNNFKGILNWHNSVKN 1676

Query: 852  FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
               +   V T+  R   ++  +  +S          +N P+QG++ADIT+  M  +   +
Sbjct: 1677 --SRPTMVRTLGNRLSVFESFSFTRS----------LNYPVQGTSADITKETMARLVDLV 1724

Query: 912  EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
            +   L  K+++ +HDE++ EVPE+    A ++++ +M K+   K   +VP++    + ++
Sbjct: 1725 K--PLNAKIIICVHDEIILEVPEDNAEKALKMLIDTMVKSG-EKYLKKVPVEAMGSIGDS 1781

Query: 972  WQEE 975
            W ++
Sbjct: 1782 WADK 1785


>gi|114588750|ref|XP_001165287.1| PREDICTED: DNA polymerase theta isoform 4 [Pan troglodytes]
          Length = 2499

 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1859 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1918

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1919 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1977

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1978 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2037

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 2038 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2097

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R +R++ F  +        + T TGR+ 
Sbjct: 2098 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2152

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
             +EPN+QN+P      + T +G+                                     
Sbjct: 2153 FIEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2212

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 2213 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2272

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2273 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2332

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2333 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2392

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2393 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2452

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2453 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2493


>gi|99035969|ref|ZP_01315013.1| hypothetical protein Wendoof_01000149 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 529

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 8/299 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE    ++DG  F++RA+Y  P L     G+P+  + GF NM+ K + +S   +IA    
Sbjct: 2   KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHSDYLTIA---- 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D     FR+ +YP+YKANR   PE L PQ  ++R A +AF +   EI+G+EADDIIA
Sbjct: 57  --LDAGKKNFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114

Query: 123 TYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T     A  + F V ++S+DKDL QL++    ++D +K   ID + VI+K+G+   K++ 
Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L +LTGD+ DNIPG+PGIG KTAA LL E+ +L NI+ N   I+Q + R  + E+ E A 
Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +SR+L+ L   V +   +    +   N  +L+SFLK  EF  LI +V   +    ++ E
Sbjct: 235 ISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKVEKLFSYSGSSTE 293



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 24/175 (13%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           LKI HNIK  + +       +   +D+M+MSY LD+G+  H I +I    LS    EI  
Sbjct: 361 LKIIHNIKEIRKIFPAIEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLS-ENAEIF- 418

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           S K+ I I +                       L+ +L  EKLL +YER DKP++ V+  
Sbjct: 419 SAKTLIAIHE----------------------KLKQRLFQEKLLTIYERFDKPLMKVIFD 456

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           ME  GI ++   L+++S +  + +  LE+ IY+L+GE+FN++SPKQL D+LF K+
Sbjct: 457 MEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKM 511


>gi|114588754|ref|XP_001165216.1| PREDICTED: DNA polymerase theta isoform 3 [Pan troglodytes]
          Length = 2500

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1860 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1919

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1920 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1978

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1979 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2038

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 2039 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2098

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R +R++ F  +        + T TGR+ 
Sbjct: 2099 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2153

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
             +EPN+QN+P      + T +G+                                     
Sbjct: 2154 FIEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2213

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 2214 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2273

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2274 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2333

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2334 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2393

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2394 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2453

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2454 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2494


>gi|330858981|emb|CBX69340.1| hypothetical protein YEW_IM36920 [Yersinia enterocolitica W22703]
          Length = 323

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 166/306 (54%), Gaps = 11/306 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + I  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300

Query: 298 NIEPVV 303
              P  
Sbjct: 301 KDRPTA 306


>gi|296226149|ref|XP_002807658.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Callithrix
            jacchus]
          Length = 2550

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1910 SCLQKESDEERSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1969

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1970 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2028

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 2029 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHILQAKLDAIETQAYQLAGHSFSFT 2088

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 2089 SSDDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLK 2148

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R +R++ F  +        + T TGR+ 
Sbjct: 2149 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2203

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 2204 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKIKKGWSLNPGCQAQMEERA 2263

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV  +  D+ R +A
Sbjct: 2264 AERGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNSGADVFRSIA 2323

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2324 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2383

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2384 NQFMRETVKNCKRDGFVQTILGRRRYLPGIKENNPYHKAHAERQAINTTVQGSAADIVKI 2443

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2444 ATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLLPKRKLQGMFCPIRGGFFILQLHDELL 2503

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2504 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2544


>gi|114588748|ref|XP_516680.2| PREDICTED: DNA polymerase theta isoform 5 [Pan troglodytes]
 gi|332817593|ref|XP_001165150.2| PREDICTED: DNA polymerase theta isoform 1 [Pan troglodytes]
          Length = 2596

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1956 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2015

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 2016 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2074

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 2075 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2134

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 2135 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2194

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R +R++ F  +        + T TGR+ 
Sbjct: 2195 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2249

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
             +EPN+QN+P      + T +G+                                     
Sbjct: 2250 FIEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2309

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 2310 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2369

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2370 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2429

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2430 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2489

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2490 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2549

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2550 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2590


>gi|255024155|ref|ZP_05296141.1| DNA polymerase I [Listeria monocytogenes FSL J1-208]
          Length = 280

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/283 (40%), Positives = 158/283 (55%), Gaps = 10/283 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + PE+++
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASGKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E ++E  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVVENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
           A LS++L  +  D PI   +E    +     ++I  LK + FT
Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFT 279


>gi|309810195|ref|ZP_07704040.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169467|gb|EFO71515.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 681

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 198/319 (62%), Gaps = 19/319 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           LKK  E+++  K   ++K + + L R GI++    +DIML SY+ DS  ++ D+  +A  
Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423

Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  +     EI+     ++ S+ +D +       H     +V+ +L   + P+L   + L
Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           H+Y+ ++ P+  ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SP
Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KLK     KTKTG + T+   LE++    +PI+ +IL++RQ+SKI+STY +
Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744
            L ++I +   ++HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+  P K+  
Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653

Query: 745 -LISADYSQIELRILAHIA 762
            L S DYSQ+ELR+LAH++
Sbjct: 654 YLFSCDYSQVELRVLAHVS 672



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 163/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 4   LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 57  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           +     +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 117 LGAMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|114588756|ref|XP_001165181.1| PREDICTED: DNA polymerase theta isoform 2 [Pan troglodytes]
          Length = 1762

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1122 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1181

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1182 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1240

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1241 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1300

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 1301 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 1360

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R +R++ F  +        + T TGR+ 
Sbjct: 1361 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 1415

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
             +EPN+QN+P      + T +G+                                     
Sbjct: 1416 FIEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 1475

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 1476 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 1535

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 1536 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 1595

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 1596 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 1655

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 1656 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 1715

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 1716 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 1756


>gi|317471924|ref|ZP_07931258.1| 5'-3' exonuclease [Anaerostipes sp. 3_2_56FAA]
 gi|316900590|gb|EFV22570.1| 5'-3' exonuclease [Anaerostipes sp. 3_2_56FAA]
          Length = 479

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 169/291 (58%), Gaps = 13/291 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L L+DG S + RAFYA P ++    GL  NAI GF N+++K L   +     +HFAV
Sbjct: 2   EKKLMLIDGHSILNRAFYALPDMTNSK-GLHTNAILGFLNIMFKFLDEEK----PTHFAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+E++ +YK  R  +PE L  Q+P+++   +A  IP +  +G+EADD++ T
Sbjct: 57  AFDLSAPTFRHEMFKEYKGTRKPMPEELREQVPVIKEVLKAMDIPLMMEEGYEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPP 176
            + I EKEG+ V IIS D+DL+QL +       P T     V E+    + V++ +G+ P
Sbjct: 117 MSVIGEKEGYQVRIISGDRDLLQLATENVQIRIPKTKGGGNVVEDYF-AKDVMETYGVTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + ++AL GD+ DNIPGIPGIG KTA+ +++E+ ++EN   +   +  K+ +  + E+
Sbjct: 176 KEFIDMKALMGDASDNIPGIPGIGEKTASKIIKEFKSIENAYEHIEEVMPKRAKNKLEEF 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +   LS++L  ++ D PI +  E     D         LK LEF  ++ +
Sbjct: 236 YDQGVLSKELATIKLDCPIELSFEDAKFNDIFTGEAYQLLKQLEFKSVLKK 286


>gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
 gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
          Length = 642

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 162/573 (28%), Positives = 269/573 (46%), Gaps = 44/573 (7%)

Query: 440 TGKNTL-TKEILSYLKKF-FENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVL 496
            GKN      ++++LK F F NE  +K+ HNI ++   L  YGI ++    D ML S + 
Sbjct: 75  NGKNVEDVHRMIAWLKGFVFHNESLIKVAHNISFESSFLCEYGIVIKEPVFDTMLGSML- 133

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-------IDKISDSQVQ--EHAIENSN 547
            + +S  +  ++    L    KEI      S          D +     +   +A  +S+
Sbjct: 134 -TFKSFGEFRTLRDSGLKLLAKEIFNEDLPSFSHVVNGTHFDNLHSEHKETVRYACADSD 192

Query: 548 VILQL--WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             L+L  W +   +  + +   V ER++ P       M+  GI ++++LL++ +    + 
Sbjct: 193 YALRLYNWCMEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEE 252

Query: 606 LLSLEENIYDLSGEKFNLSSPKQ---LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN- 661
           L   +  I   +  + NL S  Q     D LF  L+ P     + G      + L  +  
Sbjct: 253 LEFCKREILSFANREVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGDPSLDDESLILLEE 312

Query: 662 -CGDN-----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT-FYSLASTMTGRLA 714
            C  N      +I+ I   +++SK+KSTY ++L   +N  T ++HT F+S+ +  TGR +
Sbjct: 313 WCIRNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDFFSMGAE-TGRFS 371

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQN+P K +    IR+ FI  P    +  D+SQIELR+ A+  K   +   F   
Sbjct: 372 SRNPNLQNLPRKDNDHLGIRKLFIPSPNHVFLDFDFSQIELRVGAYYCKDRKMINAFMKD 431

Query: 775 LDIHRMVAAEIFGVNIEKVS-------PQMRRHAKTINFSIIYGISPFRLATQL------ 821
            DIH +  + I+ + +E+ +        + R  AK  NF + +G+ P  L   L      
Sbjct: 432 FDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNFGVFFGLFPKGLQKTLMYKGGI 491

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I   +    I+     +P +  + + T       GY  +  GRR +  ++ S   + R 
Sbjct: 492 NISEKDCERIIRNIKDGYPRLSTWQKDTVKVAAYRGYTRSRTGRRRYLKDMKSKDWNKRA 551

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           ++ER A+N PIQG+AADI + AM  + + L + +   K LLQIHDEL+FEV E+++  A 
Sbjct: 552 VSERCALNTPIQGTAADIIKIAMARILRELPE-RGYIKPLLQIHDELLFEVREDKVNEAI 610

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             I   ME+   P  +  +P+KV   V  N+ E
Sbjct: 611 VFIKDCMERT--PFKDFNIPIKVEYSVGYNFDE 641


>gi|297285105|ref|XP_001111254.2| PREDICTED: DNA polymerase theta isoform 2 [Macaca mulatta]
          Length = 2672

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 169/645 (26%), Positives = 284/645 (44%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 2032 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2091

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 2092 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2150

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 2151 LQDVFRKVEMPSQYCLALLELNGIGFSTAECEGQKHIMQAKLDAIETQAYQLAGHSFSFT 2210

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 2211 SSDDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLK 2270

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R +R++ F  +        + T TGR+ 
Sbjct: 2271 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2325

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 2326 FTEPNIQNVPRDFEIKMPTLVGESPPSQAIGKGLLPMGRGKSKKGCSLNPGRQAQMEERA 2385

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 2386 ADRGMPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2445

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2446 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2505

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2506 NQFMRETVKNCKRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKI 2565

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2566 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLLRKRKLQGMFCPVRGGFFILQLHDELL 2625

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2626 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2666


>gi|195329438|ref|XP_002031418.1| GM25985 [Drosophila sechellia]
 gi|194120361|gb|EDW42404.1| GM25985 [Drosophila sechellia]
          Length = 2006

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/427 (31%), Positives = 224/427 (52%), Gaps = 37/427 (8%)

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            LL  +  ++ P+   + QME+ G    +  L+Q+   +   +  LE  IY+  G +FNL 
Sbjct: 1594 LLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQHGSRFNLG 1653

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            S + +  +L    K         G+  T+ Q LE++N   +PI   IL +R+LS + +  
Sbjct: 1654 SSQAVAKVLGLHRK-------AKGRVTTSRQVLEKLN---SPISHLILGYRKLSCLLAKS 1703

Query: 685  ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTD-LGQKIRRAF 737
               L      +  R+H   S+  T TGR++  EPNLQN      I +  D +    R  F
Sbjct: 1704 IQPLMECC--QADRIHG-QSITYTATGRISMTEPNLQNVAKEFCIQVGADAVNISCRSPF 1760

Query: 738  ISPPT---KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
            +  PT   + L+SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +   +V+
Sbjct: 1761 M--PTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIKESEVT 1818

Query: 795  PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            P +R   K + + I+YG+    LA  L     EA     ++   + GI +Y  +  NF R
Sbjct: 1819 PDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARILSDQFHEAYKGIRDYTRRVVNFAR 1878

Query: 855  QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
              G+VETI GRR + + INS    ++   ER A+N+ IQGSAADI + A++ + K++E +
Sbjct: 1879 GKGFVETITGRRRYLEMINSDMEHLKKA-ERQAVNSTIQGSAADIAKNAILKMEKNIERY 1937

Query: 915  --KLA-----TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
              KLA       +++ +HDEL+FEVP  +    ++++  +ME +C   + L VPLKV ++
Sbjct: 1938 REKLALGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITME-SC---VKLSVPLKVKLR 1993

Query: 968  VSNNWQE 974
            +  +W E
Sbjct: 1994 IGRSWGE 2000


>gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
 gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
          Length = 787

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 166/586 (28%), Positives = 281/586 (47%), Gaps = 77/586 (13%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG--FEDIMLMSYVLDSG--RSSHD 504
           ++  LK   E +    + HN K+D  +L + GI++R   + D M+   VL+    +    
Sbjct: 198 VMKKLKPHLEKKGTKLVLHNSKFDSHMLLKDGITIRNNIYFDTMIAHSVLNENDEKGLKA 257

Query: 505 IASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQL--WLLLRP 558
           IA+   ++  +  K +    L S K        S      +A +++++ L+L  W L   
Sbjct: 258 IATKYGRFFGFEDKSMSFGELFSNKPEAFYSNESMELCTFYACKDTHLCLKLYKWQLSMM 317

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           K    KL  VY   ++P+   V  ME TG +ID         E+   +  LE+ +    G
Sbjct: 318 K-KQPKLYDVYFNYEQPLTPAVLAMEETGFEIDFSFADMYKTELQAEVSDLEQKMTRRFG 376

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E  NL+SP QL  +L+ +LK P      +G+ K  A+ L+++   ++ + K ILE+R L+
Sbjct: 377 E-INLNSPAQLSALLYDELKLPD----ISGKRKADAKTLQKLVKHESDL-KLILEYRDLN 430

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+ +TY + LP  +NK T ++H+ ++ ++T+T R AS +PNLQN+P       K R+  +
Sbjct: 431 KLLTTYVEPLPEKVNKNTGKLHSSFNQSATVTSRFASKDPNLQNLP------PKARKLIV 484

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK------ 792
           +P    +   DYSQIE R LAH++    L   + N++D++  +A++IF +  E       
Sbjct: 485 APKGYLIFGIDYSQIEPRTLAHMSGDAGLQYPYLNNIDLYASLASKIFKLPYEACLEADG 544

Query: 793 -------VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
                  +    R+  K    +++YGI+   LA  L I   EA  ++  ++  +P +  +
Sbjct: 545 ETYKKAGLPKHPRKMMKVGLLAVMYGITVPSLAESLGISVPEAQKFMDDFYSSYPEMTAW 604

Query: 846 IEKTKNFVRQNGYVETIFGRR----------IHYDEINSPKSSI--------------RN 881
           + K      + GYVET+ GR+           HY  +++   +I              RN
Sbjct: 605 MAKQVAHADETGYVETMQGRKRRFIGHTVIAKHYHALHAKVVNILGREPENIWREPLPRN 664

Query: 882 INE-------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
           + +             R ++NA IQGSAA + ++AMI+V+  LE      KM+  IHDEL
Sbjct: 665 LKKQYWEVNKDYQRVARMSVNAIIQGSAALMLKKAMIAVNAHLERKGAGWKMMATIHDEL 724

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +F +PE         I + M+      + L VPLKV+ +V   W E
Sbjct: 725 LFLIPEAVTPEEIIEIENIMKDV----VKLDVPLKVDTEVMIRWGE 766


>gi|157786800|ref|NP_001099348.1| DNA polymerase theta [Rattus norvegicus]
 gi|149060535|gb|EDM11249.1| polymerase (DNA directed), theta (predicted), isoform CRA_a [Rattus
            norvegicus]
          Length = 2547

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 174/651 (26%), Positives = 285/651 (43%), Gaps = 126/651 (19%)

Query: 444  TLT-KEILSYLKKFFE----NEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLD 497
            TLT KE + YL+   +     E  +     I+  K++L   GIS+   +ED  +  ++LD
Sbjct: 1897 TLTVKERMEYLQSCLQKKSDQERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLD 1956

Query: 498  SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI-----SDSQVQEHAIENSNVILQL 552
                   + SI   +L +    +L+  ++   I  +     +D   +  A   S +I   
Sbjct: 1957 PDSKEPTLHSIVTSFLPH-ELALLEGIETGPGIQSLGLNVNTDHSGRYRASVESVLIFNS 2015

Query: 553  WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
               L   L  E L  ++ +++ P    ++ +E+ GI       +     +   L ++E  
Sbjct: 2016 MNQLNSMLQKENLHDIFCKVEMPSQYCLALLELNGIGFSTAECETQKHIMQAKLDAIETQ 2075

Query: 613  IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT----------------------GQW 650
             Y L+G  F+ +S   +  +LF +LK P   + KT                      G+ 
Sbjct: 2076 AYQLAGHSFSFTSADDIAQVLFLELKLPPNGEMKTQGGRKTLGSTRRGTESDRKLRLGRR 2135

Query: 651  KTTAQDLEQINCGDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLA 706
             +T++D+       +P+   ILEWR++S    K  +      H+N   R +R++   S +
Sbjct: 2136 FSTSKDILNKLKDLHPLPGLILEWRRISNAITKVVFPLQREKHLNPFLRMERIYPV-SQS 2194

Query: 707  STMTGRLASLEPNLQNIPIKTDL----------------------------------GQK 732
             T TGR+   EPN+QN+P   ++                                  GQ+
Sbjct: 2195 HTATGRITFTEPNIQNVPRDFEIKMPTLVRESPPSQASGKGQLAMARQNQKVYGLHPGQR 2254

Query: 733  ----------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
                            +R AF+  P   +++ADYSQ+ELRILAH+++   L QV  +  D
Sbjct: 2255 TVLEKTSDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNSGAD 2314

Query: 777  IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            + R +AAE   +  + V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  + 
Sbjct: 2315 VFRSIAAEWKMIEPDAVGDNLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFK 2374

Query: 837  HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             R+ GI+ ++  T    R++G+VETI GRR +   I       +   ER AIN  +QGSA
Sbjct: 2375 SRYKGINHFMRDTVKNCRRDGFVETILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSA 2434

Query: 897  ADITRRAMISVHKSLE-------DHKLATKML--------------------------LQ 923
            ADI + A +++ K LE        H     ML                          LQ
Sbjct: 2435 ADIVKVATVNIQKQLETFHPTFKSHGHRESMLQSDRAGLLPKRKVKGMFCPMRGGFFILQ 2494

Query: 924  IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +HDEL++EV EE++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2495 LHDELLYEVAEEDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2541


>gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 242

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 154/241 (63%), Gaps = 5/241 (2%)

Query: 733 IRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           IR AF+      +L++ADYSQIE+RI+AH+++   L + F    D+H  VA+  F V I+
Sbjct: 1   IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+P++RR  K +++ + YG+S + +A QL+I   EA   +++YF RF G+ +Y+    +
Sbjct: 61  EVTPELRRRVKAMSYGLAYGLSAYGVAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVD 120

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
             R++GY  T+ GRR +  E++S    +R   ERAA+NAPIQGSAADI + AMI+V +++
Sbjct: 121 QARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAI 180

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           +D  L +++LLQ+HDEL+FEV E E     Q++   M  A      L VPL+V++    +
Sbjct: 181 KDAGLRSRILLQVHDELLFEVSEGERGELEQLVREHMGNA----YPLDVPLEVSVGYGRS 236

Query: 972 W 972
           W
Sbjct: 237 W 237


>gi|301786873|ref|XP_002928855.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Ailuropoda
            melanoleuca]
          Length = 2634

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 170/650 (26%), Positives = 286/650 (44%), Gaps = 138/650 (21%)

Query: 449  ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIAS 507
            +LS  ++  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + S
Sbjct: 1993 LLSCFQEESDKERSVIIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSKEPTLHS 2052

Query: 508  IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA---------IENSNVILQLWLLLRP 558
            I   +L +    +L   ++   I  +  +   EH+         I   N + QL  LL+ 
Sbjct: 2053 IVSSFLPH-ELPLLDGIETGQGIQSLGLNVNSEHSGRYRASVESILTFNAMNQLNSLLKK 2111

Query: 559  KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
                E L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G
Sbjct: 2112 ----ENLKDVFCKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAG 2167

Query: 619  EKFNLSSPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQD 656
              F+ +S   + ++LF +LK P                      +G K K G+  +T++D
Sbjct: 2168 HSFSFTSSDDIAEVLFLELKLPPNGEIKNQNSKKTLGSTRRGNDNGRKLKLGKQFSTSKD 2227

Query: 657  LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------AST 708
            +       +P+   ILEWR+++   +     L     +R +R++ F  +        + T
Sbjct: 2228 VLNKLKALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHT 2282

Query: 709  MTGRLASLEPNLQNIP------IKTDLGQK------------------------------ 732
             TGR+   EPN+QN+P      + T +G+                               
Sbjct: 2283 ATGRVTFTEPNIQNVPRDFEIKMPTVVGESPPSQALGKGLLPMNRGKEKSCGINSGHQAQ 2342

Query: 733  ---------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
                           +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+
Sbjct: 2343 MEERASDRGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADV 2402

Query: 778  HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
             R +AAE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  
Sbjct: 2403 FRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKS 2462

Query: 838  RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            R+ GI+ ++ +T    +++G+V+TI GRR +   IN      +   ER AIN  +QGSAA
Sbjct: 2463 RYTGINHFMRETVKNCKRDGFVQTILGRRRYLPGINDNNPYHKAHAERQAINTTVQGSAA 2522

Query: 898  DITRRAMISVHKSLE-------DHKLATKML--------------------------LQI 924
            DI + A +++ K LE        H     ML                          LQ+
Sbjct: 2523 DIVKVATVNIQKQLETFHSTFKSHGHREGMLQSERTGLLPKRKLQGVFCPIRGGFFILQL 2582

Query: 925  HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            HDEL++EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2583 HDELLYEVAEEDVVQVAQIVKNEMESA----MELSVKLKVKVKIGASWGE 2628


>gi|297670244|ref|XP_002813286.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Pongo
            abelii]
          Length = 2728

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 171/646 (26%), Positives = 285/646 (44%), Gaps = 132/646 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 2087 SCLRKESDQECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2146

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 2147 TSFLPH-ELPLLEGMETSQGIQSLGLNVGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2205

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK-NLLSLEENIYDLSGEKFNL 623
            L  V+ +++ P    +S +E+ GI        +    I +  L ++E   Y L+G  F+ 
Sbjct: 2206 LQDVFRKVEMPSQYCLSLLELNGIGFSTAECYESQKHIMQAKLEAIETQAYQLAGHSFSF 2265

Query: 624  SSPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQIN 661
            +S   + ++LF +LK P                      +G K + G+  +T++D+    
Sbjct: 2266 TSSDDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKL 2325

Query: 662  CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRL 713
               +P+   ILEWR+++   +     L     +R +R++ F  +        + T TGR+
Sbjct: 2326 KALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRI 2380

Query: 714  ASLEPNLQNIP------IKTDLGQK----------------------------------- 732
               EPN+QN+P      + T +G+                                    
Sbjct: 2381 TFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGCSLNPRCQAQMEER 2440

Query: 733  -----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
                       +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +
Sbjct: 2441 AADRGMPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSI 2500

Query: 782  AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            AAE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ G
Sbjct: 2501 AAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTG 2560

Query: 842  IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            I++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI +
Sbjct: 2561 INQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTTVQGSAADIVK 2620

Query: 902  RAMISVHKSLE-------DHKLATKML--------------------------LQIHDEL 928
             A +++ K LE        H     ML                          LQ+HDEL
Sbjct: 2621 IATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSQKRKLQGMFCPIRGGFFILQLHDEL 2680

Query: 929  VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2681 LYEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2722


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 148/544 (27%), Positives = 288/544 (52%), Gaps = 38/544 (6%)

Query: 441  GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG 499
            G+N L K    +LK  F+++  +K+ HN K+D   L  YG    G   D M+ S +L + 
Sbjct: 1271 GRNELIK--CEWLKNLFKSKDTVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKLLVAS 1328

Query: 500  RS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            R  S  +  +++++L+    +    + S     ++ + Q+  ++  +S V+L L+++L  
Sbjct: 1329 RYISCKLTHVSERYLNIVLDKT--QQYSDWSTLQLFEEQLL-YSARDSFVLLPLYVILEH 1385

Query: 559  KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LS 617
             L +  L  +   ++   I   S ME+ GI++D+D L+ +  E+ +    +  ++Y  L+
Sbjct: 1386 LLKINNLADI-ASVENKCILATSDMELNGIKVDEDKLRILQDELKQEHQEISNDLYSQLN 1444

Query: 618  GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
              + NL+S KQ+ + L  +LK    +K K     + +  +  ++   NPII ++ E+R+ 
Sbjct: 1445 HSEINLNSQKQVLEKL-QELKIMDRSKKKIISDTSESTLIRNMS---NPIISSLREYRKA 1500

Query: 678  SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            +K  + +   LPNHIN  T+R++  Y+     +GR +   PNLQ +P      +K R  F
Sbjct: 1501 NKALTAFTQKLPNHINPITKRIYPNYNQLGAESGRFSCDGPNLQQVP----RDKKFRECF 1556

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            ++P   K + AD+SQIELRI A IA    + Q ++ ++D+H + A+ +   +I +V+ + 
Sbjct: 1557 VAPKGSKFVIADFSQIELRIAAEIANDPKMIQAYQQNVDLHSLTASILKNKSINEVNKEE 1616

Query: 798  RRHAKTINFSIIYGIS--PFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            R+ AK +NF +I+G+S    R+  +    L++ ++EA +    +F+ F GI  +    KN
Sbjct: 1617 RQLAKAVNFGLIFGMSINGLRMYAETGYNLKLTQTEAKEIYTSFFNNFKGILNWHNSVKN 1676

Query: 852  FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
               +   V T+  R   ++  +  +S          +N P+QG++ADIT+  M  +  S+
Sbjct: 1677 --SRPTMVRTLGNRLSVFESFSFTRS----------LNYPVQGTSADITKETMARLVDSV 1724

Query: 912  EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
            +   L  K+++ +HDE++ EVPE+    A ++++ +M K+   K   +VP++    + ++
Sbjct: 1725 K--PLNAKIIICVHDEIILEVPEDNAEKALKMLIDTMVKSG-EKYLKKVPVEAMGSIGDS 1781

Query: 972  WQEE 975
            W ++
Sbjct: 1782 WADK 1785


>gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
 gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
          Length = 640

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 155/571 (27%), Positives = 265/571 (46%), Gaps = 42/571 (7%)

Query: 440 TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVL 496
           +G+N   +  I  YLK  FE++  +K+ HN+ ++ + L+  GI ++   ++ I      L
Sbjct: 70  SGRNAENQAAIWDYLKLLFESKDVIKVAHNLAFESMFLYARGIVLQKPCYDTIAASQLTL 129

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-------IDKIS--DSQVQEHAIENSN 547
              +S  +  S+A   L      + K+  +           D+++  D +   +A  +S+
Sbjct: 130 ---KSKWEFRSLADSGLKTLAPALCKAEMTEFSTVTEGRFFDELNPQDEKTVRYACADSD 186

Query: 548 VILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             L+L+ +        + K   + E ++ P    V  M+  GI +D+  + +  AE ++ 
Sbjct: 187 YTLRLYHVFNQWFDRFLPKHRTIVEEVESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEK 246

Query: 606 LLSLEENIYDLSG--EKFNLSSPKQLGDILFTKLKFP---SGAKTKTGQWKTTAQDLEQI 660
           ++S+ + I  + G  E    +S       LF  L  P   + AK +      T   L++ 
Sbjct: 247 IVSIRKEIAGIIGNVEIGANASTSAFKKYLFVDLGLPVMKTTAKHQEAADDETMILLKEW 306

Query: 661 NCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
              + P    + + + E+R+  K+KSTY D     I++ T R+H       T TGR AS 
Sbjct: 307 CATNRPELVRLFELVQEYRKWGKLKSTYIDGYLRFIDEDTGRIHPDLMPLGTETGRFASR 366

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PN+QN P K +    +R+  I+P  K L+S D+SQIELR+ A   +   + + +    D
Sbjct: 367 NPNMQNCPQKDNDPIGVRKFIIAPAGKVLLSLDFSQIELRVGAFYCRDKRMLETYRTGGD 426

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRH-------AKTINFSIIYGISPFRLATQLRIPR---- 825
           IH    + I+ +  E+ + +   H       AK  NF + YG+ P  L   L+       
Sbjct: 427 IHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNFGVFYGLFPTGLQRTLKFKAGINP 486

Query: 826 --SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
             +E    I+     +PG+ ++ ++ K     + Y ET  GRR +   I S     ++  
Sbjct: 487 TLAECETIIQNLKSGYPGLAKWQDEVKKRAAVSCYSETWLGRRRYLLGIRSSDWGKKSFA 546

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N PIQG+AADI + A   +   L + +L  K +LQIHDELVFE+PE+++  A   
Sbjct: 547 ERCALNTPIQGTAADILKLACGRIISGLPE-RLWLKPMLQIHDELVFELPEDKVDEAVVF 605

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I   ME    P  +  VP+     V  N+ E
Sbjct: 606 IKECMETQPFPAFD--VPIVAEASVGRNFGE 634


>gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ)
            [Danio rerio]
          Length = 2239

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 161/601 (26%), Positives = 276/601 (45%), Gaps = 107/601 (17%)

Query: 473  KLVLHRYGISMRG-FEDIMLMSYVLDSG---RSSHD-IASIAQKWLSYTRKEILKSRKSS 527
            K++L    +++RG FED  +  ++LDS    R+ H+ + S A + L             S
Sbjct: 1637 KILLLACELAVRGTFEDPKIACWLLDSSSKERTLHNMVTSFATEDLPLLEGISAGQGVQS 1696

Query: 528  IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            + I   +    +  A   S ++ ++   L   L  +  L V+++++ P    ++ +E+ G
Sbjct: 1697 LGIFGEASQPGRYRAAIESVLVFRVMTQLNCLLEKDGFLDVFKKVEMPTQYCLALLELNG 1756

Query: 588  IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------- 640
            I       +     +   L +LE   Y L+G  F+L+SP+ + ++LF +LK P       
Sbjct: 1757 IGFSIAECEAQKHVMQAKLSALESQAYQLAGHSFSLTSPEDVAEVLFLELKLPPNGDLNG 1816

Query: 641  ------------SGAKTK-TGQWKTTAQDLEQINCGDNPIIKNILEWRQ----LSKIKST 683
                        +GA+ K + Q+ TT   LE++    +P+   ILEWR+    L+K+   
Sbjct: 1817 LKNKKTLGYTRRAGARIKLSKQFSTTKDVLEKLK-PLHPLPGVILEWRRITNALTKVVFP 1875

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-------------- 729
                   H + +  R+H   S + T TGR++  EPN+QN+P   ++              
Sbjct: 1876 LQREKKWHSHLKMDRIHPI-SQSHTATGRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQN 1934

Query: 730  -GQKI--------------------------------RRAFISPPTKKLISADYSQIELR 756
             G K+                                R AF+      +++ DYSQ+ELR
Sbjct: 1935 GGSKMWCKRTKINRQLAPLLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELR 1994

Query: 757  ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
            ILAH+++   L  V  +  D+ + +AAE   V+   V   MR+ AK I + IIYG+    
Sbjct: 1995 ILAHLSRDRRLLHVLNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKS 2054

Query: 817  LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            L  Q+ I  ++AA YI+ +  R+ GI  ++ +T     +NGYV+T+ GR+     I    
Sbjct: 2055 LGEQMGIEENDAACYIETFKSRYNGIQNFLRETVQKCGKNGYVKTLLGRKRFLPGIKDSN 2114

Query: 877  SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-------------KLATK---- 919
              I++  ER A+N  +QGSAADI + A I++ + +E+              +L  +    
Sbjct: 2115 VYIKSHAERQAVNTTVQGSAADIVKLATINIQRRIEEAFPGVPTSHQHPSIRLGGRHRNQ 2174

Query: 920  --------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
                     +LQ+HDEL++EV EE++   +QI+   ME      + L V L+V +KV  +
Sbjct: 2175 FRPLRGGYFILQLHDELIYEVAEEDVIQVAQIVKREMESV----VKLYVKLRVKVKVGPS 2230

Query: 972  W 972
            W
Sbjct: 2231 W 2231


>gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba]
 gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba]
          Length = 2043

 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 135/427 (31%), Positives = 221/427 (51%), Gaps = 34/427 (7%)

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +LL  +  ++ P+   +  ME  G    Q  L+Q+  ++   +  LE  IY+  G +FNL
Sbjct: 1629 QLLKFFHDIEMPIQLTLCHMEFVGFPAQQQRLQQLYQKMVAVMRKLETKIYEQHGSRFNL 1688

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             S + +  +L    K         G+  T+ Q LE+IN   +PI + IL +R   K+   
Sbjct: 1689 GSSQTVAKVLGLHRK-------ANGRVTTSRQVLEKIN---SPISQLILGYR---KVAGL 1735

Query: 684  YADSL-PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTD-LGQKIRR 735
             A S+ P        R+H   S+  T TGR++  EPNLQN      I + +D L    R 
Sbjct: 1736 LAKSIQPLLKCCEADRIHG-QSITYTATGRISMTEPNLQNVAKEFCIQVGSDALRIACRL 1794

Query: 736  AFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
             F+     + L+SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +   +VS
Sbjct: 1795 PFVPKDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIEESEVS 1854

Query: 795  PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              +R   K + + I+YG+    LA  L     EA    +++   + GI EY  +   F R
Sbjct: 1855 QDLRNSTKHVCYGIVYGMGMRSLAESLNCSEQEARMISEQFHQAYKGIREYTSRVVKFAR 1914

Query: 855  QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
              G+VETI GRR + D INS +  ++N  ER AIN+ IQGSAADI + A++ + K++E +
Sbjct: 1915 NQGFVETITGRRRYLDNINSDEEQLKNQAERQAINSTIQGSAADIAKSAILKMEKNIERY 1974

Query: 915  K-------LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            +        +  +++ +HDEL+FEVP  +    ++++  +ME      + L VPLKV ++
Sbjct: 1975 RDKLVLGDQSVDLIMHLHDELIFEVPAAKAKKIAKVLSLTMENC----VKLSVPLKVKLR 2030

Query: 968  VSNNWQE 974
            +  +W E
Sbjct: 2031 IGRSWGE 2037


>gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum]
 gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum]
          Length = 1588

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 240/471 (50%), Gaps = 49/471 (10%)

Query: 516  TRKEILKSRKSSIPIDKISDSQVQE--------HAIENSNVILQLWLLLRPKLIVEKLLH 567
            T  +++++    +P+D+  D++++         H ++N  V          +L    LL 
Sbjct: 1149 TLHQLVETYCPELPLDQGQDAKLRSIFECYLSWHVLKNIEV----------ELSKSNLLT 1198

Query: 568  VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
            V++  +  ++ +++ +E+ GI  +   L  +   +++ L ++E   + ++G  F+ +S +
Sbjct: 1199 VFDT-EMSIMRILANIELAGIGANVSTLSNLVDLLTRELKAIERQGHAIAGRHFSFASSR 1257

Query: 628  QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
            QL  IL               Q    ++   Q N  DNP+   IL+WR   KI +T   +
Sbjct: 1258 QLAKIL---------------QSDNNSKKSLQKN--DNPLASLILKWR---KISATIGKT 1297

Query: 688  LPNHIN-KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ---KIRRAFISPPTK 743
            L   I      R+   Y +  T TGR+   EPNLQN+    D+       R+AF+     
Sbjct: 1298 LQPLIRLVENGRIFGCY-VTHTATGRITMHEPNLQNVAKDFDIDGVEVSCRKAFVPSQGH 1356

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             ++SAD+ Q+ELR+LAH+++   L  +     DI R +AA+   ++  +V+ ++R+ AK 
Sbjct: 1357 VMVSADFCQLELRVLAHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQRAKQ 1416

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            I + IIYG+    LA QL    ++A  +++ + + +PG+ +YI +     R+ G+VET+ 
Sbjct: 1417 IIYGIIYGMGSKALAEQLNTDEAQATRFMQTFRNAYPGVQKYISEIIETCRKTGFVETLA 1476

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            GRR     IN    ++++  ER A+N  IQGSAAD+ + AM+ +       K   K++L 
Sbjct: 1477 GRRRFLAHINHKNGAVKSQAERQAVNTTIQGSAADLVKMAMVRLETVFLGEK-EVKLVLH 1535

Query: 924  IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +HDEL++EVPE  + +  +I+   ME +    + L +P  V +K   +W +
Sbjct: 1536 LHDELLYEVPEGSLGSFVRILKTEMEGS----VKLSIPFPVKVKSGPSWGQ 1582


>gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 552

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 163/252 (64%), Gaps = 5/252 (1%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +    D P+  ++ +ME  G++I+   L  +S EI K    L++ I+D++G  FN++
Sbjct: 304 LYKIATDFDFPLAPLLFKMEKRGVKINTSYLADMSHEIGKKYEELQQKIFDIAGYNFNIA 363

Query: 625 SPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           SP QL D+LF KL+ P+    K KTG + T  ++L ++  G +P+I+ I + R+L+K+K+
Sbjct: 364 SPAQLSDMLFIKLQLPTTGIKKGKTG-YSTGQKELNKLR-GLHPVIELIEQTRELAKLKN 421

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  ++K   R+HT ++     TGRL+S  PNLQNIPI++ LG+KIR AFI+   
Sbjct: 422 TYVDALPKLVDK-NYRLHTTFNQDVVSTGRLSSTHPNLQNIPIRSTLGKKIRNAFIADED 480

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             L+SADYSQ ELR+ A +A    L   F N +DIH   A++++ + +++V+   RR+AK
Sbjct: 481 NILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVTSNQRRNAK 540

Query: 803 TINFSIIYGISP 814
            INF ++YG+SP
Sbjct: 541 VINFGVLYGMSP 552



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 88/153 (57%), Gaps = 7/153 (4%)

Query: 144 LMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
           ++QLVSP T +Y  +K    +IE      +  K GI   + + L+AL GDS DNIPG+PG
Sbjct: 1   MLQLVSPLTKVY-AMKRGLSNIEEYNPSILENKLGIKVSQFLDLKALKGDSSDNIPGVPG 59

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258
           IG KTA  LL+E+ +L+NI  N   IK    ++ +L   E+A +SRK+  +  D P+   
Sbjct: 60  IGDKTAVALLKEFESLDNIYKNIEIIKPAWAKK-LLAGKESAYISRKVGQIWRDAPVDFD 118

Query: 259 LEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           L+ + + + +  +L   L+ LEF  LI R+ T 
Sbjct: 119 LKSMDIHNLDVVKLSDQLRKLEFNSLIKRLPTA 151


>gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 147/226 (65%), Gaps = 1/226 (0%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELR 756
           R+HT +      TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELR
Sbjct: 16  RIHTTFEQTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELR 75

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+A ++    L + F +  D H+ VA+ ++GV +++++P  R H K +++ + YG+S + 
Sbjct: 76  IMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAYGLSTYG 135

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ QL I   EA    ++YF  F  +HEY+E   +  R+ GY ETI+GRR ++  + SP 
Sbjct: 136 LSQQLGIKPGEAESLKRQYFATFGKVHEYLESLVSSAREKGYTETIYGRRRYFPGLKSPN 195

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            ++R+  ERAA+NAPIQGSAADI + AMI    +L +  LA++++ 
Sbjct: 196 RAVRDAAERAALNAPIQGSAADIMKIAMIRADDALREAGLASRIIF 241


>gi|312074456|ref|XP_003139979.1| hypothetical protein LOAG_04394 [Loa loa]
 gi|307764861|gb|EFO24095.1| hypothetical protein LOAG_04394 [Loa loa]
          Length = 1001

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 213/404 (52%), Gaps = 24/404 (5%)

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           + S++E  GI  D +  + + +++ + L  +E   YD+SG  FN  S  ++  ILF +L+
Sbjct: 604 LFSEIETMGIAFDTNKAEILHSKLKQKLTDIEAKAYDISGIPFNFGSAAEISQILFVRLQ 663

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ- 697
            P    +    + T    L+Q+   + PII  ILEWR++S   +T   SLP+ +      
Sbjct: 664 IPPPNLSTGRHYSTNKFVLQQL-APNYPIINLILEWRRISTALTT---SLPSLLKSCCSD 719

Query: 698 -RVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-GQKIRRAFISPPTKKLISADYSQIEL 755
            R+ T + +  + TGR+ +  PN+QN+     + G  IR  FI+P  + L+S+DY Q+E+
Sbjct: 720 GRIRTNF-ITYSCTGRVLTENPNVQNVQKDGIIDGFSIRSLFIAPKGRILLSSDYRQLEM 778

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAA-----EIFGVNIEKVSPQMRRHAKTINFSIIY 810
           R+LAH++  + L  +F    D   ++       E   V ++      R   K + + IIY
Sbjct: 779 RMLAHLSADSQLISLFLAEGDFFEIITNKWNTNETLPVKVD------RNKVKQLCYGIIY 832

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G+    L+ +L I +  A   I  +F +FP +  +++K     R +G+V T+ GRR    
Sbjct: 833 GMGSLSLSKELGIQKQHAQQMIISFFQQFPKVRTWMDKILAVCRADGFVSTLLGRRRFLP 892

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +INS   +     ER AIN  IQGS A++ + A++++ K+L      + +++Q+HDE++ 
Sbjct: 893 QINSMLQTESAQAERQAINTCIQGSVAELFKMALLNLQKNLLGTN--SSIVMQMHDEVLV 950

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E  E  + +  +II HSM  + +P  NLRVPL V I    NW E
Sbjct: 951 ETDESSVASVVEIIKHSM-TSVMP--NLRVPLAVKISSGKNWGE 991


>gi|76364226|gb|AAR08421.2| DNA polymerase theta [Homo sapiens]
          Length = 2590

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1950 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2009

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 2010 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2068

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 2069 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2128

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 2129 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2188

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R + ++ F  +        + T TGR+ 
Sbjct: 2189 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 2243

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 2244 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2303

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 2304 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2363

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2364 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2423

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2424 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2483

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2484 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2543

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2544 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2584


>gi|119599916|gb|EAW79510.1| polymerase (DNA directed), theta, isoform CRA_a [Homo sapiens]
          Length = 2725

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 2085 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2144

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 2145 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2203

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 2204 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2263

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 2264 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2323

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R + ++ F  +        + T TGR+ 
Sbjct: 2324 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 2378

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 2379 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2438

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 2439 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2498

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2499 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2558

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2559 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2618

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2619 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2678

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2679 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2719


>gi|139394648|ref|NP_955452.3| DNA polymerase theta [Homo sapiens]
 gi|325511332|sp|O75417|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase eta
 gi|225000062|gb|AAI72289.1| Polymerase (DNA directed), theta [synthetic construct]
          Length = 2590

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1950 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2009

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 2010 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2068

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 2069 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2128

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 2129 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2188

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R + ++ F  +        + T TGR+ 
Sbjct: 2189 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 2243

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 2244 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2303

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 2304 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2363

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2364 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2423

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2424 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2483

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2484 ATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2543

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2544 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2584


>gi|260816346|ref|XP_002602932.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
 gi|229288246|gb|EEN58944.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
          Length = 2215

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 162/606 (26%), Positives = 273/606 (45%), Gaps = 113/606 (18%)

Query: 470  KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKS 526
            +Y  L L   GI+M G FED  +  ++LD G          Q+   +T +E  +L+    
Sbjct: 1612 QYKALALG-CGITMNGDFEDPKVADWLLDPGAKVKSFHGTVQR---FTPQESYLLQGLGG 1667

Query: 527  SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV------YERLDKPMIDVV 580
               +  ++ + VQ          L+  L       ++KLL        +  ++ P +  +
Sbjct: 1668 CFGVGSLAMT-VQNSGSGRMRAALECVLTFHMMEELDKLLEAQGLSTAFRDVEMPSLVTL 1726

Query: 581  SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
            ++ME+ G        +     +   L  LEE  Y L+G  F L+SP  +  +LF +LK P
Sbjct: 1727 ARMELNGAGFSPVECETQCQIMQAKLRMLEEQAYQLAGHTFALTSPDDIAQVLFLELKLP 1786

Query: 641  SGA---KTKTGQWKTT---------AQDLEQINCGDNPIIK---------NILEWRQLSK 679
            +      T   Q + T          + L+ ++   + + K          ILEWR++S 
Sbjct: 1787 ANGDPSSTTNPQPRKTLGTARPARGRKPLKHLSTSKDVLEKLKKFHALPGVILEWRRISN 1846

Query: 680  --IKSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIP----------- 724
               K  +        N R    R++    L  T TGR+   +PNLQNIP           
Sbjct: 1847 SLTKVVFPLQKEKVYNPRLNMDRIYGNCDL-HTATGRVTFHDPNLQNIPKDFEIEMPTII 1905

Query: 725  ----------------------------IKTD-LGQ----KIRRAFISPPTKKLISADYS 751
                                        +++D  GQ     +R AFI      L++ADYS
Sbjct: 1906 GDSPPPGCGETVSKRKGRKVVRRTDGRRVESDGAGQAFSVSLRHAFIPFQGGVLLAADYS 1965

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            Q+ELRI+AH+++ + L QV  +  D+ + +A++  GV +E VS ++R+ AK + + +IYG
Sbjct: 1966 QLELRIIAHLSQDSKLTQVLNSGQDVFKAIASQWKGVAMEDVSDKLRQQAKQLCYGMIYG 2025

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            I    L  QL +   E A +I+ +  ++ G+  Y+  T +  +++G+V+T+ GRR +   
Sbjct: 2026 IGAKALGEQLGVDEEEGACFIETFKSKYTGMRRYLHTTVDQCKKDGFVQTMAGRRRYLPG 2085

Query: 872  INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE--------DHKLATK---- 919
            I      +R   ER A+N  +QGSAAD+ ++AM+S+ + L+         H+  T+    
Sbjct: 2086 ITEGNHHVRCHAERQAVNTTVQGSAADLVKKAMVSIDQKLQKLFPATRRSHRQDTQKRSR 2145

Query: 920  -------------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
                         ++LQ+HDEL++EV  E++   +QI+ H ME A    + L V L V +
Sbjct: 2146 RSQQPSSPPRGAYLILQLHDELIYEVRREDVQQVAQIVKHEMENA----VKLSVVLPVKV 2201

Query: 967  KVSNNW 972
            KV   W
Sbjct: 2202 KVGPTW 2207


>gi|119599919|gb|EAW79513.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
 gi|119599920|gb|EAW79514.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
          Length = 2270

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1630 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1689

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1690 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1748

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1749 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1808

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 1809 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 1868

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R + ++ F  +        + T TGR+ 
Sbjct: 1869 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 1923

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 1924 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 1983

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 1984 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2043

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2044 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2103

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2104 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2163

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2164 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2223

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2224 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2264


>gi|300122531|emb|CBK23101.2| unnamed protein product [Blastocystis hominis]
          Length = 437

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 214/387 (55%), Gaps = 27/387 (6%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
           L+ Y  ++  ++ +++ M+ TG+ +D   L++    I   L  LE+    L G    + S
Sbjct: 7   LNSYWNIELRLLPLLAHMDATGVNVDSAALQRNKMVIDPLLKDLEQKAEALVGHPILMWS 66

Query: 626 PKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            KQ+ ++L+ +LK   P G +  T     T  D        +P    ++E+R+LSK  ST
Sbjct: 67  SKQVCEVLYDELKLEAPKGNRVSTESVLQTMAD-------KHPFPGLVIEYRRLSKQMST 119

Query: 684 YADSLPNHI------NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT-----DLGQK 732
           Y D L          +  T+ +++ ++  +T TGRL++  PN+Q +P ++     +L   
Sbjct: 120 YIDGLEKEFVSVPFRSTETKLIYSTWNQMATGTGRLSTAAPNMQTLPKRSLERLSNLDVD 179

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF---ENSLDIHRMVAAEIFGVN 789
           IR AF++ P ++LIS DY QIE+R+ AH +    L  +F   +NS DI+ M+A+ I  V 
Sbjct: 180 IRGAFVALPNRRLISVDYRQIEMRVFAHCSHDIALINLFSSGQNS-DIYTMIASMIHKVE 238

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           ++ V+ + R  AK I   + YG+    +A++L+IP   A        +RF G+ ++++ T
Sbjct: 239 VKDVTQKFRDEAKVITLGLCYGMGVESMASKLKIPILTATQLKNSILNRFKGVLQFMKNT 298

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
            +  R+  +VET+ GRR ++   +S    + +I +R A+N+ IQGSAAD+ + AMI + K
Sbjct: 299 ISSARKTHFVETLSGRRRYFKAKDSGGEGLAHI-DRQAVNSVIQGSAADLLKCAMILLWK 357

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEE 936
            L +  L ++++LQIHDELV + P+ +
Sbjct: 358 PLSE--LDSEIILQIHDELVIDCPDSD 382


>gi|62089320|dbj|BAD93104.1| DNA polymerase theta variant [Homo sapiens]
          Length = 2214

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1574 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1633

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1634 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1692

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1693 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1752

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 1753 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 1812

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R + ++ F  +        + T TGR+ 
Sbjct: 1813 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 1867

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 1868 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 1927

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 1928 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 1987

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 1988 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2047

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2048 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2107

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2108 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2167

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2168 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2208


>gi|153840365|ref|ZP_01993032.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149745970|gb|EDM57100.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 323

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 163/291 (56%), Gaps = 11/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P  +  +  +P NA+ G  NML  +++    E IA    V
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNEL 291


>gi|328724318|ref|XP_003248103.1| PREDICTED: DNA polymerase theta-like isoform 1 [Acyrthosiphon pisum]
          Length = 1691

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 234/438 (53%), Gaps = 34/438 (7%)

Query: 542  AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            A+ N+ + L+L   LR +L    +   ++ ++ P+  ++++ME+ G  +++  L +++  
Sbjct: 1281 AVFNAFITLKLMSTLRHQLKQIYIYKTFKDIEMPIQIILAKMELYGFGLNKKHLVELNDT 1340

Query: 602  ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            ++K + ++ E  ++ SG +FN+ S                     T +W    + L+  +
Sbjct: 1341 VNKLMANISEQGFEQSGIRFNMQS---------------------TLEWAKVKKKLKLTD 1379

Query: 662  CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               + +++ +  WR+LS +++T+ +    ++  +  RVH   +  S  TGR++  EPNLQ
Sbjct: 1380 SSSHLLVELVKNWRKLSCLRNTHINM---YLTIQNDRVHCDSNTYSN-TGRISMHEPNLQ 1435

Query: 722  NIPIKTDLGQKI---RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
            NIP    +  +I   R AF+    + L+S D+ QIELR+LAH++K + L     +  D+ 
Sbjct: 1436 NIPKDYVIENEILSLRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVF 1495

Query: 779  RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              ++++   +   +V  ++R+  K + + ++YG+    L+  L I + EA   I  +   
Sbjct: 1496 INLSSKWHNIPEIEVCDELRQKTKQVCYGMLYGMGTVTLSETLNITQDEAHKLISEFKRT 1555

Query: 839  FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            FPG+++Y  +     R  G V+T+ GR  H+ +INS    I++  ER AIN  IQGSAAD
Sbjct: 1556 FPGVNKYFNECVLQCRSMGLVKTLSGRIRHFPDINSEVPKIKSQVERQAINTIIQGSAAD 1615

Query: 899  ITRRAMISVHKSLEDHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
            +T+ AMI V K +    L T+  +++ +HDEL+F+V    +  A   I+ +ME A    +
Sbjct: 1616 VTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAA----V 1671

Query: 957  NLRVPLKVNIKVSNNWQE 974
            NL VPL V ++  ++W +
Sbjct: 1672 NLCVPLPVKLRKGSSWGD 1689


>gi|328724320|ref|XP_003248104.1| PREDICTED: DNA polymerase theta-like isoform 2 [Acyrthosiphon pisum]
          Length = 1583

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 234/438 (53%), Gaps = 34/438 (7%)

Query: 542  AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            A+ N+ + L+L   LR +L    +   ++ ++ P+  ++++ME+ G  +++  L +++  
Sbjct: 1173 AVFNAFITLKLMSTLRHQLKQIYIYKTFKDIEMPIQIILAKMELYGFGLNKKHLVELNDT 1232

Query: 602  ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            ++K + ++ E  ++ SG +FN+ S                     T +W    + L+  +
Sbjct: 1233 VNKLMANISEQGFEQSGIRFNMQS---------------------TLEWAKVKKKLKLTD 1271

Query: 662  CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               + +++ +  WR+LS +++T+ +    ++  +  RVH   +  S  TGR++  EPNLQ
Sbjct: 1272 SSSHLLVELVKNWRKLSCLRNTHINM---YLTIQNDRVHCDSNTYSN-TGRISMHEPNLQ 1327

Query: 722  NIPIKTDLGQKI---RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
            NIP    +  +I   R AF+    + L+S D+ QIELR+LAH++K + L     +  D+ 
Sbjct: 1328 NIPKDYVIENEILSLRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVF 1387

Query: 779  RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              ++++   +   +V  ++R+  K + + ++YG+    L+  L I + EA   I  +   
Sbjct: 1388 INLSSKWHNIPEIEVCDELRQKTKQVCYGMLYGMGTVTLSETLNITQDEAHKLISEFKRT 1447

Query: 839  FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            FPG+++Y  +     R  G V+T+ GR  H+ +INS    I++  ER AIN  IQGSAAD
Sbjct: 1448 FPGVNKYFNECVLQCRSMGLVKTLSGRIRHFPDINSEVPKIKSQVERQAINTIIQGSAAD 1507

Query: 899  ITRRAMISVHKSLEDHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
            +T+ AMI V K +    L T+  +++ +HDEL+F+V    +  A   I+ +ME A    +
Sbjct: 1508 VTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAA----V 1563

Query: 957  NLRVPLKVNIKVSNNWQE 974
            NL VPL V ++  ++W +
Sbjct: 1564 NLCVPLPVKLRKGSSWGD 1581


>gi|119599917|gb|EAW79511.1| polymerase (DNA directed), theta, isoform CRA_b [Homo sapiens]
          Length = 1762

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1122 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1181

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1182 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1240

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1241 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1300

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 1301 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 1360

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R + ++ F  +        + T TGR+ 
Sbjct: 1361 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 1415

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 1416 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 1475

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 1476 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 1535

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 1536 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 1595

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 1596 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 1655

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 1656 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 1715

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 1716 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 1756


>gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta]
 gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta]
          Length = 2037

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 134/426 (31%), Positives = 223/426 (52%), Gaps = 32/426 (7%)

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +LL  +  L+ P+   +  ME  G    Q LL+Q+  ++   +  LE  I++  G +FNL
Sbjct: 1623 QLLKFFHDLEMPLQLTLCHMEFVGFPAQQQLLQQLYQKMVAVVRKLETKIFEQHGSRFNL 1682

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             S + +  +L    K         G+  T+ Q LE++N    PI   IL +R+L+ + + 
Sbjct: 1683 GSSQAVAKVLGLHRKI-------NGRVTTSRQVLEKLN---TPISHMILGYRKLAGLLAK 1732

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTD-LGQKIRRA 736
                L      +  R+H   S+  T TGR++  EPNLQN      I + +D +    R  
Sbjct: 1733 SIQPLLKCC--QADRIHG-QSITYTATGRISMAEPNLQNVAKEFCIQVGSDAVNISCRLP 1789

Query: 737  F-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F +    + L+SAD+ Q+E+RILAH+++   L +V  +S D+   +AA    +   +VS 
Sbjct: 1790 FMLKDEDRCLLSADFCQLEMRILAHLSQDKGLLKVMNSSQDLFIAIAAHWNKIEESEVSQ 1849

Query: 796  QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             +R   K + + I+YG+    LA  L     EA    +++   + GI EY  +   F R 
Sbjct: 1850 NLRNSTKQVCYGIVYGMGMRSLAESLNCSEEEARLISEQFHQAYTGIREYTMRVVKFARN 1909

Query: 856  NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
             G+VETI GRR + D INS +  ++N  ER AIN+ IQGSAADI + A++ + K+LE ++
Sbjct: 1910 QGFVETITGRRRYLDNINSDQEHLKNQAERQAINSTIQGSAADIAKSAILKMEKNLERYR 1969

Query: 916  ----LATK---MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
                L  K   +++ +HDEL+FEVP  +    ++++  +M+      + L VPL+V +++
Sbjct: 1970 DKLGLGDKSVDLVMHLHDELIFEVPAAKSKKIAKVLSVTMQNC----VKLTVPLQVKLRI 2025

Query: 969  SNNWQE 974
              +W E
Sbjct: 2026 GRSWGE 2031


>gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans]
 gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans]
          Length = 967

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 224/427 (52%), Gaps = 37/427 (8%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           LL  +  ++ P+   + QME+ G    +  L+Q+   +   +  LE  IY+  G +FNL 
Sbjct: 555 LLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQHGSRFNLG 614

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S + +  +L    K         G+  T+ Q LE++N   +PI   IL +R+LS + +  
Sbjct: 615 SSQAVAKVLGLHRK-------ARGRVTTSRQVLEKLN---SPISHLILGYRKLSCLLAKS 664

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTD-LGQKIRRAF 737
              L      +  R+H   S+  T TGR++  EPNLQN      I + +D +    R  F
Sbjct: 665 IQPLMECC--QADRIHG-QSITYTATGRISMTEPNLQNVAKEFCIQVGSDAVNISCRSPF 721

Query: 738 ISPPT---KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           +  PT   + L+SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +   +V+
Sbjct: 722 M--PTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIKESEVT 779

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           P +R   K + + I+YG+    LA  L     EA     ++   + GI +Y  +  NF R
Sbjct: 780 PDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARIISDQFHEAYKGIRDYTRRVVNFAR 839

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
             G+VETI GRR + +  NS    ++   ER A+N+ IQGSAADI + A++ + K++E +
Sbjct: 840 GKGFVETITGRRRYLEMTNSDMEHLKKA-ERQAVNSTIQGSAADIAKNAILKMEKNIERY 898

Query: 915 --KLA-----TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
             KLA       +++ +HDEL+FEVP  +    ++++  +ME +C   + L VPLKV ++
Sbjct: 899 REKLALGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITME-SC---VKLSVPLKVKLR 954

Query: 968 VSNNWQE 974
           +  +W E
Sbjct: 955 IGRSWGE 961


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 159/540 (29%), Positives = 279/540 (51%), Gaps = 38/540 (7%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG-RSSHDIAS 507
           LS LK    N   LK+  N K+D  VL   G+   G F D+ML S VL SG +  HD+ S
Sbjct: 78  LSPLKALL-NSSALKVFQNGKFDWQVLEMAGLRPSGPFFDVMLASQVLRSGLKKDHDLQS 136

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  ++L     ++ KS +SS    K+S SQ+ E+A  ++ V+L+L   L  KL    LL 
Sbjct: 137 LTFEFLGI---KLDKSLQSSNFAGKLSASQL-EYAALDAAVLLKLRARLHSKLRSAGLLE 192

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
              +++   +  V+QME+ G+ +D +    V  E+       +  + +L       +   
Sbjct: 193 T-AKIEFAAMPAVAQMELNGMLLDVEQWHLVGEELKAQK---QATLVELVKAGLKPAPSA 248

Query: 628 QLG---DILFT-----KLKFPSGAKTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLS 678
           QL    D++ T      ++  S  +      K+T++  E I      P+I+ +L +R+L+
Sbjct: 249 QLSLFPDMVETINPRSSVQVLSALQALNIPIKSTSKS-ELIPIARQYPVIQLLLNYRKLA 307

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
            + S +A++LP HI++ T R+H  Y      +GR +  +PNLQN+P    + + +R  FI
Sbjct: 308 SLCSNFAEALPKHIHQITGRIHPSYRQCGARSGRFSCKQPNLQNVPRNCTV-KGMRACFI 366

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           +PP  ++I ADYSQIELRI+A I+    +   +    D+H + A+ I G  +E+V+ + R
Sbjct: 367 APPGYQIIKADYSQIELRIVAEISGDAKMLDAYVKGEDLHTLTASLITGKLLEEVTTEDR 426

Query: 799 RHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           R AK++NF +IYG+   +L         + +   EA ++ KR+F  + G+  +     + 
Sbjct: 427 RIAKSVNFGLIYGMGAAKLQAYAEEKYDVLLTLEEAKEFRKRFFQAYSGVKRW----HDS 482

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
           +R+  YV+ I   R             R ++E   +N P+QG++AD+ + A+  + K L 
Sbjct: 483 IRRTVYVKDIKQIRTIGGRRRRWAKKPR-LSE--LLNHPVQGTSADMLKVAIARLFKLLP 539

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             K   K++  +HDE++ E P+  +   S I+   M +A    +  +VP++V +K++++W
Sbjct: 540 --KTGAKLIAVVHDEILLECPQTTLKRTSCILKKVMVEAGELYLQ-QVPVEVEVKIASSW 596


>gi|224143022|ref|XP_002324822.1| predicted protein [Populus trichocarpa]
 gi|222866256|gb|EEF03387.1| predicted protein [Populus trichocarpa]
          Length = 646

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 146/462 (31%), Positives = 226/462 (48%), Gaps = 50/462 (10%)

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           LW LL      E L    + ++ P+++V++ ME+ GI +D +        + K L  LE+
Sbjct: 174 LWKLL----TSEGLFEALKNIEIPLVNVLADMELWGIGVDMEGCLNARTVLGKRLRYLEK 229

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC--GDNPIIK 669
             Y L+G  F+L +   + +IL+  LK P       G+ K  + D   ++    ++PI+ 
Sbjct: 230 KAYKLAGMTFSLYTAADIANILYRHLKLPIPEGHNKGK-KHPSTDKHCLDLLRHEHPIVP 288

Query: 670 NILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPI 725
            I E R L+K+ ++   S+ +   ++  TQ+  +H  +   ST TGRL+  EPNLQ +  
Sbjct: 289 VIREHRTLAKLLNSTLGSICSLARLSMETQKYTLHGHWLQTSTATGRLSIEEPNLQCVEH 348

Query: 726 KTDLGQ--------------KIR-RAFISPPTKK--LISADYSQIELRILAHIAKITPLY 768
             D                 KI  R F  P      L++ADYSQIELR++AH +K T L 
Sbjct: 349 AVDFEMSSDKEGDDAEPEHYKINARDFFVPTQDNWLLLTADYSQIELRLMAHFSKDTALI 408

Query: 769 QVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           ++      D+  ++AA   G     VS   R   K + + I+YG+    LA QL     E
Sbjct: 409 KLLTKPHGDVFNLIAARWTGKPEASVSSVERDQTKRMVYGILYGMGANTLAEQLDCSSDE 468

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA+ IK +   FPG+  ++ +     R+ GYVETI GR+    +I    S  ++  +R A
Sbjct: 469 AAEKIKSFKSSFPGVASWLHEAVASCREKGYVETIKGRKRFLSKIKFGNSEEKSKAQRQA 528

Query: 888 INAPIQGSAADITRRAMISVHKSLEDH-----------------KLATKMLLQIHDELVF 930
           +N+  QGSAAD+ + AMI++H  + D                  K   ++LLQ+HDELV 
Sbjct: 529 VNSICQGSAADLIKIAMINIHSLIVDGVGRPESSSLHANKFHMLKGQCRILLQVHDELVL 588

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EV    I  A+ ++  SME A     +L VPL V +KV   W
Sbjct: 589 EVDPSLINEAAVLLQMSMEDAA----SLLVPLHVKLKVGRTW 626


>gi|289548726|ref|YP_003473714.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Thermocrinis albus DSM 14484]
 gi|289182343|gb|ADC89587.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Thermocrinis albus DSM 14484]
          Length = 290

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 144/213 (67%), Gaps = 6/213 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS+F+YR+F+A P LS K DG P  A+ GF   L  ++++ + +    + AV+FD
Sbjct: 4   LYLLDGSAFLYRSFFALPPLSTK-DGFPTGAVYGFLRALLSIIKSEKPQ----YMAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +P+ T R + Y  YK NRP +P+ L  Q+P+++  T   GIP +E++G+EADDIIA  T+
Sbjct: 59  HPSPTVRKKEYAHYKTNRPTMPDPLKVQIPVIKELTVLLGIPLVEMEGYEADDIIAALTH 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            A +EGF V I S DKD++QLV +    + + +K E +D   V++K+G+PPEK+    AL
Sbjct: 119 RALEEGFKVRIYSPDKDILQLVKNEQVVVINPIKGEVLDERKVMEKFGVPPEKLADYLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
            GD +DN+ G+ G+G KTA  +L+ YG++ENIL
Sbjct: 179 VGDKVDNVEGVKGVGPKTALKVLEAYGSVENIL 211


>gi|321475795|gb|EFX86757.1| hypothetical protein DAPPUDRAFT_312857 [Daphnia pulex]
          Length = 1781

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 230/454 (50%), Gaps = 29/454 (6%)

Query: 539  QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +E  +     +L ++  L+ +L  E+LL  +  ++ PM+  + +ME  GI  D+   + +
Sbjct: 1330 REKILHECCALLDIFHQLKQRLSKEELLQPFVDVEMPMVATMLRMEQIGIAFDRSNCELI 1389

Query: 599  SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT---------KLKFPSGAKTKTGQ 649
               +  +L  LEE  + L+G  F+L+S K++  I+ +            F +  K K   
Sbjct: 1390 LQILRNHLKMLEEAAHRLAGRSFSLTSTKEVSKIVASLNLCIEEKNPQSFINPLKKKFQP 1449

Query: 650  WKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS- 707
               +   L  I  G  +P+ + ++E+R++S I  T    L   +   T  V     +A  
Sbjct: 1450 LSVSKASL--IKLGRIHPLPRVVVEFRKVSAIIQTIICPL---LQASTFHVSGVERIAGE 1504

Query: 708  ----TMTGRLASLEPNLQNIPIKTDLGQ----KIRRAFISPPTKKLISADYSQIELRILA 759
                  TGR+  ++PNLQ+IP    L       +R AF +     L+SADYSQ+ELRILA
Sbjct: 1505 CEFRNATGRVNIVQPNLQHIPRPFSLSDGRMINVRSAFHAATGTTLLSADYSQLELRILA 1564

Query: 760  HIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
            H+++ T L  +    + D+ R + +       E V+   R+ AK I + I+YG+    LA
Sbjct: 1565 HLSEDTGLCSILSKPNGDVFRGIVSVWKKKKQEDVTDDERQQAKQICYGIVYGMGCKSLA 1624

Query: 819  TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             QL +   EA  ++  +   +P I ++I  T N  R  G+V T+ GRR     INS  ++
Sbjct: 1625 EQLEVSEEEAQLFVDSFHSTYPNIQKFITNTINMCRSKGFVITLLGRRRFLPSINSNNAA 1684

Query: 879  IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
             R   ER A+N  IQGSAAD+ + A+I +++SL++      ++ QIHDEL+FE+P   + 
Sbjct: 1685 QRAQAERQAVNTKIQGSAADLVKTAVILLNRSLKEKLSDVHLVHQIHDELLFEIPTNCVE 1744

Query: 939  TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             A++++ H ME A    I +++ + V IK    W
Sbjct: 1745 RAARVVRHCMETA----IPMKIRIPVAIKTGKTW 1774


>gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens]
          Length = 1154

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 166/643 (25%), Positives = 281/643 (43%), Gaps = 131/643 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 516  SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 575

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +  +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 576  TSFFPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 634

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 635  LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 694

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 695  SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 754

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R + ++ F  +        + T TGR+ 
Sbjct: 755  ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 809

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 810  FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 869

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 870  ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 929

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 930  AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 989

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 990  NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 1049

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 1050 ATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQLHDELL 1109

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W
Sbjct: 1110 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASW 1148


>gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio]
          Length = 2593

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 180/707 (25%), Positives = 312/707 (44%), Gaps = 125/707 (17%)

Query: 385  ETIGSASFKIITDTM-----DAF----HSKPIAIAIS-TLDQKDD--TSFKVETIFIDLS 432
            ET+    FK  T  M     D F    +   + I IS +   KD    S + E +  D+S
Sbjct: 1885 ETVIGGKFKKPTTPMRNKRKDGFLLKGYEDLVVIGISVSWGAKDAYFVSLQQELVDTDIS 1944

Query: 433  VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN-IKYDKLVLHRYGISMRG-FEDIM 490
               +          +E L  ++   + +  + + ++ I   K++L    +++RG FED  
Sbjct: 1945 ASLAPPPLDDTLTVEERLKQIQSCLQKDSSVTVTYDFIHLYKILLLACELAVRGTFEDPK 2004

Query: 491  LMSYVLDSG---RSSHD-IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            +  ++LDS    R+ H+ + S A + L             S+ I   +    +  A   S
Sbjct: 2005 IACWLLDSSSKERTLHNMVTSFATEDLPMLEGISAGQGVQSLGIYGEASQPGRYRAAIES 2064

Query: 547  NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
             ++ ++   L   L  +  L V+++++ P    ++ +E+ GI       +     +   L
Sbjct: 2065 VLVFRVMTQLNCLLEKDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQKHVMQAKL 2124

Query: 607  LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-------------------SGAKTK- 646
             +LE   Y L+G  F+L+SP+ + ++LF +LK P                   +GA+ K 
Sbjct: 2125 SALESQAYQLAGHSFSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKL 2184

Query: 647  TGQWKTTAQDLEQINCGDNPIIKNILEWRQ----LSKIKSTYADSLPNHINKRTQRVHTF 702
            + Q+ TT   LE++    +P+   ILEWR+    L+K+          H + +  R+H  
Sbjct: 2185 SKQFSTTKDVLEKLK-PLHPLPGVILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHPI 2243

Query: 703  YSLASTMTGRLASLEPNLQNIP-------------IKTDLGQKIRRAFISPPTKK----- 744
             S + T TGR++  EPN+QN+P              +T      +  +IS   K+     
Sbjct: 2244 -SQSHTATGRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWYISASCKRTKINR 2302

Query: 745  ----------------------------------LISADYSQIELRILAHIAKITPLYQV 770
                                              +++ DYSQ+ELRILAH+++   L  V
Sbjct: 2303 LLAPLLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHV 2362

Query: 771  FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
              +  D+ + +AAE   V+   V   MR+ AK I + IIYG+    L  Q+ I  ++AA 
Sbjct: 2363 LNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKSLGEQMGIEENDAAC 2422

Query: 831  YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            YI+ +  R+ GI  ++ +T     +NGYV+T+ GR+     I      I++  ER A+N 
Sbjct: 2423 YIETFKSRYNGIQNFLRETVQKCGKNGYVKTLLGRKRFLPGIKDSNVYIKSHAERQAVNT 2482

Query: 891  PIQGSAADITRRAMISVHKSLEDH-------------KLATK------------MLLQIH 925
             +QGSAADI + A I++ + +E+              +L  +             +LQ+H
Sbjct: 2483 TVQGSAADIVKLATINIQRRIEEAFPGVPTSHQHPSIRLGGRHRNQFRPLRGGYFILQLH 2542

Query: 926  DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            DEL++EV EE++   +QI+   ME      + L V L+V +KV  +W
Sbjct: 2543 DELIYEVAEEDVIQVAQIVKREMESV----VKLYVKLRVKVKVGPSW 2585


>gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa]
          Length = 1413

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 214/402 (53%), Gaps = 43/402 (10%)

Query: 605  NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTTA------ 654
             L  LE+  + ++GE+F ++S  QL ++LF KLK     P     + G  +  +      
Sbjct: 959  RLKELEQEAHFVAGEQFLITSNSQLREMLFGKLKLHLLHPRATLPRMGLQRPPSTSDTVL 1018

Query: 655  ---QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
               QDL       +P+ + ILE+RQ+ KIKST+ D L  H+ K +  V + ++   T+TG
Sbjct: 1019 SALQDL-------HPLPRIILEYRQVHKIKSTFVDGLRAHMKKGS--VSSVWNQTGTVTG 1069

Query: 712  RLASLEPNLQNI---PI--------KTDLGQKI----RRAFISPPTKKLISADYSQIELR 756
            RL++  PN+Q I   PI        K + G  +    R  F+SP  +  ++AD+SQIELR
Sbjct: 1070 RLSAKRPNMQGISKLPIQIGAPRNAKGEAGDALTVSARSLFVSPEGRSFLAADFSQIELR 1129

Query: 757  ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            ILAH++    L ++F+     D+   + ++  G++ E V+   R   K + ++++YG   
Sbjct: 1130 ILAHLSGDPELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVVYGAGR 1189

Query: 815  FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
             RLA  L +   EAA + + +  ++  I ++ + T     Q GYVE++ GRR     I +
Sbjct: 1190 ERLAACLGVTLREAARFGESFLQKYKKIKDFTQATIARCHQTGYVESVMGRRRPLPRIRA 1249

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVP 933
                +R   ER A+N  +QGSAAD+ + AMI +  ++     L  +++ QIHDEL+FEV 
Sbjct: 1250 RDQKLRAQAERQAVNFVVQGSAADLCKMAMIRIFAAVATSPTLTARLVAQIHDELLFEVE 1309

Query: 934  EEEITTASQIIVHSMEK-ACLPKIN--LRVPLKVNIKVSNNW 972
            + +I   + ++  +ME    +P +   L+VPLKV++    +W
Sbjct: 1310 DSQIPEFAALVRGAMEALQEVPALGLQLQVPLKVSLSTGRSW 1351


>gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
 gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
          Length = 744

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 171/645 (26%), Positives = 312/645 (48%), Gaps = 73/645 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           K V  ++ +  ++K+      ++ +ITD       K +A  ++ L+ +++  F VET  +
Sbjct: 93  KTVQAQNREDKLRKMVEETPENYWLITD------EKRLAEFVALLENEEEIVFDVETTGV 146

Query: 430 DL---------------SVHT---SQDSTGKNTLTKEILS-YLKKFFENEHFLKIGHNIK 470
           D+                VH    ++  T    L++++++  L+ F+E+    K+ HN K
Sbjct: 147 DVWNDYIVGHVITAIKADVHAYIPTRHKTILPQLSRDLVNETLRPFYEDPTVGKLAHNAK 206

Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKS 526
           +D  +L R GI +RG   D      +L+    S  + ++  K+L   S T  ++      
Sbjct: 207 FDIHMLDREGIKLRGLTWDTQEAMRLLNENEPSFALKNLVTKYLRIESSTYGDLF----G 262

Query: 527 SIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQME 584
            I  D++ D ++   +A ++ +V L+L    R  L  + ++L  YE ++ P+I VV QME
Sbjct: 263 KIGFDEVDDLEIALAYAAKDGDVTLKLRNFQREHLAKMPEVLRYYETVEVPLISVVQQME 322

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
            TG  ID D  ++   E+   L  L + + +  G+  N++SP QL   L          +
Sbjct: 323 TTGFDIDLDYAEEYGRELKSGLDRLYDELIEELGD-VNINSPAQLKPAL----------E 371

Query: 645 TKTGQ--WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
             TG+    T A+ + +      P++K +LE++   K+ STY ++LP  I+++T +++T 
Sbjct: 372 RVTGESLASTDAKKVLKPLAKKYPVVKKLLEYKDSFKLYSTYINALPELIDQKTGKLYTN 431

Query: 703 YSLASTMTGRLAS--LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           ++     TGR +S     NLQN P      +K R+ F++P    ++  D+SQ E R LA+
Sbjct: 432 FNPNGAKTGRFSSGGTGVNLQNQP------KKARKLFVAPEGYAILGGDWSQQEYRCLAY 485

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ--MRRHAKTINFSIIYGISPFRLA 818
             +   L   +    D++  +AAE+FG  IE+       R+ AK I  ++ YG     L 
Sbjct: 486 FTQDPKLVDNYFRGDDLYASIAAEVFGKPIEECGDGSVYRKQAKVIMLAVAYGGGANMLK 545

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF---GRRIHYDEINSP 875
             + + + EA  ++  +F RFP + E++E  + FV+++G+V        RR+   +  S 
Sbjct: 546 DAIGVEKHEAQKFLDSFFERFPVVKEWVESNQKFVKKHGFVWMDHLQRKRRLPDAKDRSA 605

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-----KMLLQIHDELVF 930
           K     +  ++  NA +QGSAA  T+  MI++ + L D K A      ++   +HDE + 
Sbjct: 606 KGHYSAVFTQST-NARVQGSAAIQTKATMIALQE-LCDRKTAEGRGEWRLWCVVHDEALL 663

Query: 931 EVPEEEITTASQIIVHSMEKACLPK-INLRVPLKVNIKVSNNWQE 974
            VP+    T +Q  V   E   +   +   +P K +I++S  W E
Sbjct: 664 LVPD----TLTQQDVKDFEDVMVNTYVFGNIPNKTDIEISRRWGE 704


>gi|194222793|ref|XP_001502374.2| PREDICTED: similar to polymerase (DNA directed), theta [Equus
            caballus]
          Length = 2701

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 163/626 (26%), Positives = 276/626 (44%), Gaps = 130/626 (20%)

Query: 469  IKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    +L+  ++ 
Sbjct: 2080 IQSYKILLLSCGISLEQSYEDPKVACWLLDPDSKEPTLHSIVTSFLPH-ELPLLEGIETG 2138

Query: 528  IPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
              I  +  +   EH     A   S +I      L   L  E L  ++ +++ P    ++ 
Sbjct: 2139 QGIQSLGLNVDTEHSGRYRASVESILIFNSMNQLNSLLKKENLQDIFCKVEMPSQYCLAL 2198

Query: 583  MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-- 640
            +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF +LK P  
Sbjct: 2199 LELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPN 2258

Query: 641  --------------------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
                                +G K + G+  +T++D+       +P+   ILEWR+++  
Sbjct: 2259 GEMKNQGGKKTLGSTRRGNDNGRKLRLGKQFSTSKDILNKLKALHPLPGLILEWRRITNA 2318

Query: 681  KSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLASLEPNLQNIP----IKT- 727
             +     L     +R +R++ F  +        + T TGR+   EPN+QN+P    IK  
Sbjct: 2319 ITKVVFPL-----QRAKRLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPRDFEIKMP 2373

Query: 728  -----------------------------DLGQK-----------------IRRAFISPP 741
                                         +LG +                 +R AF+  P
Sbjct: 2374 TLVGESPPSQALGKGLLPMGRGNEKSHGLNLGHQAQTEERASDRGMPFSVSMRHAFVPFP 2433

Query: 742  TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   +  E V   +R+ A
Sbjct: 2434 GGLILAADYSQLELRILAHLSQDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQA 2493

Query: 802  KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
            K I + I+YG+    L  Q+ I  ++AA YI  +  ++ GI+ ++ +T    +++G+V+T
Sbjct: 2494 KQICYGILYGMGAKSLGEQMGIKENDAACYIDSFKSKYTGINHFMRETVKNCKRDGFVQT 2553

Query: 862  IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-------DH 914
            I GRR +   I       +   ER AIN  +QGSAADI + A +++ K LE        H
Sbjct: 2554 ILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFHSSFKSH 2613

Query: 915  KLATKML--------------------------LQIHDELVFEVPEEEITTASQIIVHSM 948
                 ML                          LQ+HDEL++EV EE++   +QI+ + M
Sbjct: 2614 GHREGMLQSDRTGLLPKRKLQGMFSPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEM 2673

Query: 949  EKACLPKINLRVPLKVNIKVSNNWQE 974
            E A    I L V LKV +K+  +W E
Sbjct: 2674 ESA----IKLSVKLKVKVKIGASWGE 2695


>gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 815

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 172/299 (57%), Gaps = 13/299 (4%)

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY--- 614
           P+++      + + L+ P+  ++++ME+ GI +D D L  +  + +    + +E+ +   
Sbjct: 515 PQVLDRGAQRLLQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASV 574

Query: 615 --DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNI 671
             +  G + NL SPKQL ++LF +L  P   KTKTG + T    L+ +     +P ++N+
Sbjct: 575 AEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTG-YSTDVDSLQDLLEQTRHPFLENL 633

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           +  R  +K++ T    L         R+HT YS  +  TGRL+SL PNLQNIP++T+ G+
Sbjct: 634 MAHRDATKLRQTVEGLL--ETVAPDDRIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGR 691

Query: 732 KIRRAFISPPTKK----LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           +IR  F++         L+SADYSQIE+RI+AH+++   L Q F    D+H  V +++FG
Sbjct: 692 RIREVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFG 751

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           V+ ++V+ + R   K +++ + YG+S F L+ QL+I   EA   +K YF RF G+ E +
Sbjct: 752 VDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYFDRFGGVPEEL 810



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 160/289 (55%), Gaps = 10/289 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L ++DG S  +RAFYA P  +   D G   NA+ GF  ML  +++  R     +H AV
Sbjct: 11  QRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQRP----THVAV 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y +YKA R + P     Q+ L     +A GIP + ++G+EADDI+AT
Sbjct: 67  AFDLSGPTFRSEEYAEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDIVAT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKI---DIEHVIKKWGIPPEKM 179
            +  AE+ G+   ++S D+D  QL+S  TT LY       I   D + V+ K+G+ P + 
Sbjct: 127 LSARAEEAGWEAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAPAQY 186

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DN+PG+PG+G   AA  L++YG+L+ +L +A  I  KK  E + E+ E 
Sbjct: 187 PELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKK-GEALREHLED 245

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            R +R+L  L  D+ + I LE + LE      +     AL+F ++  RV
Sbjct: 246 VRRNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERV 294


>gi|86563272|ref|NP_498250.3| POLQ (DNA polymerase theta) homolog family member (polq-1)
            [Caenorhabditis elegans]
          Length = 1661

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 212/400 (53%), Gaps = 38/400 (9%)

Query: 586  TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK--FP--S 641
            +GI  DQ L      +I K + +LEENI+ L+  KFN+ S  ++ ++LF +L   +P  S
Sbjct: 1287 SGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNEVANVLFYRLGLIYPETS 1346

Query: 642  GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            G K K     T    LEQ+N   +PI+  ILE+RQ+    +     L   I     R+H 
Sbjct: 1347 GCKPKLRHLPTNKLILEQMNT-QHPIVGKILEYRQIQHTLTQCLMPLAKFIG----RIHC 1401

Query: 702  FYSLASTMTGRLASLEPNLQNIP--IKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
            ++ +  T TGR+ +  PNLQN+P  I +D G   R+ FI+     LI ADY Q+ELR+LA
Sbjct: 1402 WFEMC-TSTGRILTSVPNLQNVPKRISSD-GMSARQLFIANSENLLIGADYKQLELRVLA 1459

Query: 760  HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM---RRHAKTINFSIIYGISPFR 816
            H++  + L  +  +  D+             E++S Q    R   K + + +IYG+    
Sbjct: 1460 HLSNDSNLVNLITSDRDL------------FEELSIQWNFPRDAVKQLCYGLIYGMGAKS 1507

Query: 817  LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYDEINS 874
            L+   R+   +A   +K +F  FPG+  YI +TK  V +   + TI GRR  I    I  
Sbjct: 1508 LSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKVCKEEPISTIIGRRTIIKASGIGE 1567

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
             ++ I    ER A+N  IQGSA++I + A++ +   +++     +++L IHDE++ E PE
Sbjct: 1568 ERARI----ERVAVNYTIQGSASEIFKTAIVDIESKIKE--FGAQIVLTIHDEVLVECPE 1621

Query: 935  EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +  AS+ I + M+ A L  + LRVP++V++K   +W +
Sbjct: 1622 IHVAAASESIENCMQNA-LSHL-LRVPMRVSMKTGRSWAD 1659


>gi|116517384|gb|ABJ99064.1| Hypothetical protein W03A3.2 [Caenorhabditis elegans]
          Length = 1540

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 212/400 (53%), Gaps = 38/400 (9%)

Query: 586  TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK--FP--S 641
            +GI  DQ L      +I K + +LEENI+ L+  KFN+ S  ++ ++LF +L   +P  S
Sbjct: 1166 SGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNEVANVLFYRLGLIYPETS 1225

Query: 642  GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            G K K     T    LEQ+N   +PI+  ILE+RQ+    +     L   I     R+H 
Sbjct: 1226 GCKPKLRHLPTNKLILEQMNT-QHPIVGKILEYRQIQHTLTQCLMPLAKFIG----RIHC 1280

Query: 702  FYSLASTMTGRLASLEPNLQNIP--IKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
            ++ +  T TGR+ +  PNLQN+P  I +D G   R+ FI+     LI ADY Q+ELR+LA
Sbjct: 1281 WFEMC-TSTGRILTSVPNLQNVPKRISSD-GMSARQLFIANSENLLIGADYKQLELRVLA 1338

Query: 760  HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM---RRHAKTINFSIIYGISPFR 816
            H++  + L  +  +  D+             E++S Q    R   K + + +IYG+    
Sbjct: 1339 HLSNDSNLVNLITSDRDL------------FEELSIQWNFPRDAVKQLCYGLIYGMGAKS 1386

Query: 817  LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYDEINS 874
            L+   R+   +A   +K +F  FPG+  YI +TK  V +   + TI GRR  I    I  
Sbjct: 1387 LSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKVCKEEPISTIIGRRTIIKASGIGE 1446

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
             ++ I    ER A+N  IQGSA++I + A++ +   +++     +++L IHDE++ E PE
Sbjct: 1447 ERARI----ERVAVNYTIQGSASEIFKTAIVDIESKIKE--FGAQIVLTIHDEVLVECPE 1500

Query: 935  EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +  AS+ I + M+ A L  + LRVP++V++K   +W +
Sbjct: 1501 IHVAAASESIENCMQNA-LSHL-LRVPMRVSMKTGRSWAD 1538


>gi|118090791|ref|XP_420834.2| PREDICTED: similar to DNA polymerase N [Gallus gallus]
          Length = 530

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 202/380 (53%), Gaps = 37/380 (9%)

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L V+ L  ++  L+ P+I V++ ME   I +D+  LK+ S  +   L  LEE  + ++GE
Sbjct: 142 LQVQGLWKLFCTLELPLIKVLAVMETHKIHVDKQELKKTSEILGLRLKELEEEAHQIAGE 201

Query: 620 KFNLSSPKQLGDILFTKLKFPSGA----KTKTGQWKTTA-------QDLEQINCGDNPII 668
           +F L+S  QL ++LF KLK  +      +T+  Q  +T+       QDL       +P+ 
Sbjct: 202 RFLLTSSSQLREVLFEKLKLHTLCEKIPRTERQQVASTSEVVLSKLQDL-------HPLP 254

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI---PI 725
           K +LE+RQ+ K+KSTY D L   +  R   +   ++   T+TGRL+S  PN+Q I   P+
Sbjct: 255 KLMLEYRQVRKMKSTYVDGLRTCM--RKGFICPTWNQTGTVTGRLSSKHPNIQGISKHPV 312

Query: 726 KTDLGQKI------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +    Q I            R  F+S      ++AD+SQIELRILA ++    L ++F+ 
Sbjct: 313 RITKKQYIKGKEEEILTISPRALFVSKKGYTFLAADFSQIELRILADLSAEPELLKLFQE 372

Query: 774 --SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
             + DI   +A++  G+  E+V    R  AK I +S++YG    RLA  L I   EA  +
Sbjct: 373 PETTDIFTSLASQWKGIPSEQVKQTDREQAKRIVYSVVYGAGKERLAECLGITPHEAGHF 432

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ +  ++  +HE+ +KT    +  GYV +I GR+     INS    +R   ER A+N  
Sbjct: 433 IESFMQKYKKVHEFTKKTIGQCQNKGYVVSIMGRKRLLANINSQDYKLRTQAERQAVNFV 492

Query: 892 IQGSAADITRRAMISVHKSL 911
           +QGSAAD+ + AM+ +  S+
Sbjct: 493 VQGSAADLCKMAMVEIFTSV 512


>gi|225850014|ref|YP_002730248.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644888|gb|ACO03074.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 296

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 164/282 (58%), Gaps = 6/282 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRAFYA P L+    G P  AI GF  M+  L+    KE    + AV
Sbjct: 2   DKKLVLVDGSSYLYRAFYALPPLTSPK-GEPTGAIYGFIRMISTLI----KELNPEYMAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  TFR+E Y +YKA R + P+ L  Q+P ++   + +GI  +EI G+EADDIIAT
Sbjct: 57  VFDLPGKTFRHEKYKEYKATRKETPDELKVQIPKIKEIIKLWGIKILEIPGYEADDIIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +GF V I++ DKD+MQL+     + + V  E  + E V +K+GI PE+ V   
Sbjct: 117 IAKKAVDKGFEVIIVTPDKDMMQLIDEKVFILNPVTGEIFNREKVKEKYGIYPEQFVDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           ++ GD++DNI G+ G+G KTA  LL +YGNL+NIL +  ++K  K +E   E  E  + +
Sbjct: 177 SMIGDTVDNIIGVRGVGPKTAEKLLNQYGNLKNILEHKDQLKP-KLKEAFEEAEERLKEN 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
             LV L  ++ I I  E L  E  +  +L    K L F  L+
Sbjct: 236 IFLVSLEKNIDIDIQPEDLKKEKADLLKLRDIFKELGFKSLL 277


>gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 656

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 161/633 (25%), Positives = 281/633 (44%), Gaps = 50/633 (7%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-- 424
           +Y  I +   I+++   L  +   +F   T   + +  +P A   +        SF V  
Sbjct: 3   NYRSITDMPSIRRY---LAGVSPVAFDFETAPDNEYRKEPKAALDAHKAHITGVSFSVTE 59

Query: 425 -ETIFIDLSVHTSQDSTGKNTLTKEILSYLKK-FFENEHFLKIGHNIKYDKLVLHRYGIS 482
            + I++ L+     +    + L     ++LK+  FE+   + I HN+ ++ + L++ GI 
Sbjct: 60  GDAIYVPLAHRVGVNCEDPDAL----WAFLKESIFESHDVICIAHNLSFEAMFLYKQGIV 115

Query: 483 MR--GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP----IDKISDS 536
           ++   ++ I      + S      +     K L+ +         SS+      D+++  
Sbjct: 116 VQEPCYDTIAAAQLTMKSKWEFRGLHDSGLKLLATSLFGADMPSFSSVTDGRHFDEMNPQ 175

Query: 537 QVQ--EHAIENSNVILQLWLLLRPKLIVEKLLHVY----ERLDKPMIDVVSQMEITGIQI 590
           + +   +A  +S+  L L+         ++ L  +    E+L+ P   +V  M+  GI +
Sbjct: 176 EYETVRYACADSDYTLCLYYKFNNWF--DRFLPAHRIITEQLESPTAVMVGCMKYNGIPV 233

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL---SSPKQLGDILFTKLKFPSGAKTKT 647
           D+  + +   E    + +L+  I +L+G   N+   +S       L+  L  P   KT+ 
Sbjct: 234 DRKAMLEKQTEAVAKVDALKAEINELTG-GVNIGANASTSAFKQYLYKDLGLPVLKKTEK 292

Query: 648 GQWKT---TAQDLEQINCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
            Q        Q LE+      P    + + + E+R+  K+KSTY D   +H+N  T R+H
Sbjct: 293 NQEAADDAAMQLLEEYCAQHRPELVRLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGRIH 352

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
                  T TGR A+  PN+QN P KT+    IR   ++PP + ++S D+SQIELR+ A 
Sbjct: 353 PDLMPLGTDTGRWAARNPNMQNAPRKTNDPIGIRNFIVAPPGQIIMSLDFSQIELRVGAF 412

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIE----KVSPQMRRH---AKTINFSIIYGIS 813
             +   + + + +  DIH    + +FGV  E    K +P  + H   AK  NF + YG+ 
Sbjct: 413 YCRDPKMLETYRSGGDIHAQTTSVVFGVPFEVAVDKNAPNYKEHRTIAKNCNFGVFYGLF 472

Query: 814 PFRLATQLRIPRS------EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           P  L   LR             + I      + G+  + E+TK    +  Y ET  GRR 
Sbjct: 473 PRGLQKTLRFKAGLDTSFERCKEIIDNLKSGYSGLTTWQEETKARAAKTCYAETWMGRRR 532

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +   + S      +  ER A+N P+QG+AADI + A   +     +     K +LQIHDE
Sbjct: 533 YLPHMLSSDWGKHSFAERCALNTPVQGTAADILKAACARIVAGFPERPW-LKPILQIHDE 591

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           LVF +PEE +  A Q +   ME+   P  ++ +
Sbjct: 592 LVFLLPEERLLEAQQFVKKCMEQQPYPDFDVPI 624


>gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
 gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
          Length = 736

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/256 (40%), Positives = 151/256 (58%), Gaps = 6/256 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A +FD
Sbjct: 15  LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 69

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+E+Y DYKANRP +P  L  Q+  +  A +A G P + + G EADD+I T   
Sbjct: 70  AKGKTFRDELYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAR 129

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++   AL 
Sbjct: 130 EAERRGMNVIVSTGDKDLAQLVTEHVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 189

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L +YG L+ ++ +A+ IK     +N+    +   L RKL
Sbjct: 190 GDTVDNVPGVEKCGPKTAVKWLSQYGTLDGVIEHAAEIKGVV-GDNLRRALDFLPLGRKL 248

Query: 247 VMLRTDVPITIPLEHL 262
           V + T   +   LE +
Sbjct: 249 VTVDTACDLAPHLESI 264



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 183/344 (53%), Gaps = 17/344 (4%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I        W+ KL+     +F   T  +D   ++ + ++ S    K          
Sbjct: 323 YDTIQTWAQFDAWLAKLDAAELTAFDTETTALDPMVARLVGLSFSVEPGK--------AA 374

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ ++ H   D   +  L  E+L+ LK + E+    K+G ++KYD  VL  YGI + G E
Sbjct: 375 YLPVA-HRGPDMPEQLPL-DEVLARLKPWLESADRRKVGQHLKYDAQVLANYGIELNGIE 432

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543
            D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++ +Q  E+A 
Sbjct: 433 HDTLLESYVLESHRT-HDMDSLALRHLGIKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 491

Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  LL   S EI
Sbjct: 492 EDADITLQLHRALYPQIAREPGLERVYREIEMPVSHVLRKMERTGVLIDDALLHAQSTEI 551

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++  
Sbjct: 552 ATRLIELEAQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 610

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            D P+ K +LE R LSK+KSTY D +P  +   T RVHT Y+ A
Sbjct: 611 EDYPLPKLLLEHRGLSKLKSTYTDKMPRMVIPATGRVHTNYAQA 654


>gi|330684529|gb|EGG96240.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Staphylococcus epidermidis VCU121]
          Length = 387

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 159/291 (54%), Gaps = 13/291 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L    KE   +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEQPNHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178
           +  A+K GF   II+ D+DL QL +    +Y T K+   D++H   ++      G+ P +
Sbjct: 117 SREADKAGFETIIITGDRDLTQLATDHVTIYYT-KKGVTDVDHYTPEFIAEKYNGLTPNQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  N   +  KK +E +    +
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFNTVEGVYDNIESVSGKKLKEKLENSKD 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRV 288
            A +S+ L  +  + PI + LE   + E  +    I   K LEF +L+  +
Sbjct: 236 DALMSKDLATINVESPIEVKLEDTKMDEHLDETEKIELFKKLEFNQLLAEI 286


>gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 180

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 123/177 (69%)

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IPI+ + G++IR+AFI+    K+++ADYSQIELRI+AH+A    +   F    DIHR  A
Sbjct: 1   IPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATA 60

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AEIFG+ +++V+ + RR AK INF +IYG+S F L+ QL I R++A  Y++RYF R+P +
Sbjct: 61  AEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAV 120

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            +++   +    + GYVET+FGRR++  EI S  +  R   ER AINAP+QG+AADI
Sbjct: 121 QQFMTGIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADI 177


>gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis]
          Length = 1661

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 229/455 (50%), Gaps = 43/455 (9%)

Query: 555  LLRPKL--IVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            +L PK+  I++K  L + +  ++ P   VV  +E  GI  + DL   +S  +   L  LE
Sbjct: 1205 VLYPKIFEILKKKNLWNAFLNIELPAQYVVGNIESAGIGFNVDLCMAMSTCLKNKLNELE 1264

Query: 611  ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG--------QWKTTAQDLEQINC 662
                  +G +F+L+SPK++  +LF +L+ P   ++K          Q+ T    LE +  
Sbjct: 1265 AEAAKEAGHRFSLNSPKEVSKVLFYELQLPPPDESKVSRRRFTSVKQYSTAKHVLENL-A 1323

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSL----------PNHINKRTQRVHTFYSLASTMTGR 712
              +P+   ILE+RQLS   + Y   L           N +    +R+   Y    T TGR
Sbjct: 1324 QLHPLPGIILEFRQLSAALTNYIYPLLRINRYLCTNCNCVFSTQERIIGKYDWY-TATGR 1382

Query: 713  LASLEPNLQNIPIKTDLGQ-----KIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            L   EPNLQ +P   ++        IR  F++     L+SAD+SQ+ELRILAH++  + L
Sbjct: 1383 LIMHEPNLQIVPKFLEIPNGNNTLHIREIFVASEGCTLLSADFSQLELRILAHLSNDSKL 1442

Query: 768  YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
             ++ +  +D+   +AA++  ++   V+   R  AK I +++IYG+ P  LA +L     +
Sbjct: 1443 IKILKEKIDVFTEIAAKMNSIDRSAVNEIQRNRAKQICYALIYGMCPKSLAAELGTDEEQ 1502

Query: 828  AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            A  +   +   FP +  ++ +T    R  G+  T+  R  ++  I S  +S +   ER A
Sbjct: 1503 AIQFYNNFKKLFPDVTRWLIETTEKCRSRGFCVTLANRVRYFAAIRSSATSDKLHAERQA 1562

Query: 888  INAPIQGSAADITRRAMISVHKSLEDH----------KLATKMLLQIHDELVFEVPEEEI 937
            IN  +QGSA+DI + A+  V+ +L+D+          +   K++ QIHDEL+ EV    +
Sbjct: 1563 INTTVQGSASDIFKIALRKVYLALDDYTKKNGQMNNAQTLAKIIFQIHDELMLEVTNSNV 1622

Query: 938  TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
               + I+ HSME A    ++LRV L V IK  N+W
Sbjct: 1623 EAVATIVKHSMETA----VSLRVDLPVRIKHGNSW 1653


>gi|159486913|ref|XP_001701481.1| DNA polymerase theta [Chlamydomonas reinhardtii]
 gi|158271663|gb|EDO97478.1| DNA polymerase theta [Chlamydomonas reinhardtii]
          Length = 2508

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 240/538 (44%), Gaps = 111/538 (20%)

Query: 539  QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            Q  A   + ++ ++++   P+L  E LL     L+ P++ ++++ME  GI +   +LK  
Sbjct: 1966 QADACRRAAMVRRIYIDKLPRLQSEGLLRPLLELEMPLVRILARMEGEGIALAPQVLKDQ 2025

Query: 599  SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK-----TT 653
               +   L  L    +  +G  F+L+SPK + ++LF  L  P      + Q +       
Sbjct: 2026 RGPLEARLRQLAAKAHLAAGMTFDLNSPKDVSEVLFQHLNLPPPPCAFSNQNQRHPSTKK 2085

Query: 654  AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR--------------- 698
                E      +PII+ +L++R L K+ + + ++L +    + QR               
Sbjct: 2086 EVLEELEESTHHPIIRLLLDYRTLHKLLTGFVETLYHTAKGQWQRQQHELERCQGQGQQP 2145

Query: 699  -----------------------------VHTFYSLASTMTGRLASLEPNLQNIP----- 724
                                         +HT     ST TGRLA  EPNLQ +P     
Sbjct: 2146 QRGGAATGGAVKPGGPGPVPDVIRLCGTWLHT-----STATGRLAMDEPNLQTVPRPVEY 2200

Query: 725  --IKTDLGQK---------------------------------------IRRAFISPPTK 743
              + + L Q                                        +R AF++PP  
Sbjct: 2201 TFMASQLSQASAGTPPAAGADGAELKLLPGEERGGGAGEGGRSVTLHFNLRSAFVAPPGY 2260

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             +++ADY QIELR++AH +    L  +  N + D   ++AAE   V +E+V+P++R  AK
Sbjct: 2261 MVLAADYKQIELRLMAHFSSDAALCALLRNPAQDPFILLAAEWKKVPVEQVTPEVRVQAK 2320

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             + + ++YG+    LA +L +  +EA +    +    P +  ++ +    VR  GY  T+
Sbjct: 2321 RLAYGMLYGMGTNTLAQELGVSVAEAGELSDNFRRAIPSVDRWMREVVEAVRSCGYTTTL 2380

Query: 863  FGRRIHYDEINSPKS----SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA- 917
             GRR +Y  IN   S    S R   ER A+N   QGSAAD+ + AM+++ + LE   LA 
Sbjct: 2381 MGRRRYYSRINERASKDARSARAQAERQAVNTVCQGSAADLIKAAMVTLQRRLEAEGLAP 2440

Query: 918  -TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              +M+L +HDELVFEV E+ +  A++++   +E     ++ L VPL V +    +W +
Sbjct: 2441 HVRMVLMVHDELVFEVAEQLLPAAARLVQAVLEG----EVALSVPLPVKLSAGPSWGQ 2494


>gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis]
          Length = 1711

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 146/524 (27%), Positives = 249/524 (47%), Gaps = 55/524 (10%)

Query: 486  FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            ++D M+ S+++D       + S+ + + S     + +  K    +++ S + V    +  
Sbjct: 1201 WQDPMIASWLMDPDNIKQGLFSLVEHYCS-EHLYLFQDTKYDWDVNRPSYTSVSSEKVCC 1259

Query: 546  SNVILQ--LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
               I    L L L  +L    +   +  ++ P +  V+ +E+ GI++D  LLK+   E+ 
Sbjct: 1260 VESIASYILMLQLEEQLSGMNMWQHFTGVEMPHMYCVALLELNGIEVDNSLLKRYRLELH 1319

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
               L+L+E  + + G KFNLS+PK++  +LF +L+                       C 
Sbjct: 1320 SASLALQEKAWKILGRKFNLSNPKEVSKVLFQELRLXXXXXXXX---XXXXXXXXXYPC- 1375

Query: 664  DNPIIKNILEWRQLSKIKSTYADS----LPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                   I+ WR ++     YA +    L N +     R+H    L  T TGR+   EPN
Sbjct: 1376 -------IMSWRTVN-----YALNKVILLINSLPPSCGRLH-HKCLTLTNTGRMIMSEPN 1422

Query: 720  LQNIPIKTDL--GQK----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +Q+IP +  +  G K          +R  F++   K LISADYSQIELRILAH++    L
Sbjct: 1423 IQSIPKQFSITKGSKSEADSEQSFCLRNIFVAGNGKLLISADYSQIELRILAHLSGDETL 1482

Query: 768  YQVFENS-LDIHRMVAAEIFG--VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
               F +S +DI + +AA  +    +I+ V+ + R   K   + I+YG+    LA Q+   
Sbjct: 1483 IAAFNSSGVDIFKSIAAMFYSEISSIDDVTDKQRDTTKQTCYGILYGMGAQTLAQQMNTS 1542

Query: 825  RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             ++A + +  + + +P +  Y  +     ++ GY+ETI GRR +  EI S +  +R+  E
Sbjct: 1543 ETDAQNAMDSFMNSYPMVKVYFNRLVAQCKEKGYIETISGRRRYLPEIKSVRLKMRSHAE 1602

Query: 885  RAAINAPIQGSAADITRRAMISVHKSLEDHKLATK------------MLLQIHDELVFEV 932
            R A+N+ IQGSAADI + A   +H ++      T             ++  IHDEL++EV
Sbjct: 1603 RQAVNSTIQGSAADIVKMATYKIHCAVASLGWNTLHQNTRSNTTDFFLVHHIHDELIYEV 1662

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             E+++  A  +I    E+  +    + V L V IKV   W + N
Sbjct: 1663 DEKKLHEAVSVI----ERCMVDAFPMSVKLAVRIKVGKLWGDLN 1702


>gi|227520123|ref|ZP_03950172.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
 gi|227072467|gb|EEI10430.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
          Length = 428

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG+S  +RAF+A    L R    +GL  NAI  F NM   ++Q    + + +H  V
Sbjct: 6   LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
                +K+ + V ++S D+DL QL + T  +  TVK     E    EH+ +K+ G+ P++
Sbjct: 122 LANKVDKDEYDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E +  N   +K+ K +EN++   E
Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            A LS++L  +  + P+ + +E L  E  N  +L+ F K ++F + + ++  T
Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294


>gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus]
          Length = 848

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 240/476 (50%), Gaps = 49/476 (10%)

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K S    + S + + ++   N  ++  L + L  KL    L  ++  L+ P+I +++ ME
Sbjct: 381 KPSSTFREASRNTLSQNVCMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVME 440

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
              I +D++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF KLK    ++
Sbjct: 441 NHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQ 500

Query: 645 TK----TG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            K    TG   Q  T+   L  +    +P+ K ILE+RQ S I ST+  +          
Sbjct: 501 RKHLPRTGLQNQLSTSEAMLNSLQ-DLHPLPKLILEYRQGS-ISSTWNQT---------- 548

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPT 742
                     T+TGRL++  PN+Q I   PIK                   R  F+S   
Sbjct: 549 ---------GTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEG 599

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800
              ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   + IE+V+   R  
Sbjct: 600 HTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQ 659

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K + +S++YG    RLA  L +   EA  +++R+  ++  I ++ +         GYV 
Sbjct: 660 TKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVT 719

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATK 919
           +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++     L  +
Sbjct: 720 SILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTAR 779

Query: 920 MLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++ QIHDEL+FEV + ++   + +   I+ S+++    ++ L+VPLKVN+ V  +W
Sbjct: 780 LVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 835


>gi|183231230|ref|XP_653960.2| DNA-directed DNA polymerase [Entamoeba histolytica HM-1:IMSS]
 gi|169802582|gb|EAL48574.2| DNA-directed DNA polymerase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 657

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 201/393 (51%), Gaps = 21/393 (5%)

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID  LL +   ++ +    +E     + G   NLSSP+Q+   L   ++F  G     G
Sbjct: 268 KIDNKLLNEQRKKLIEEQHKIEMETKKIIGRTINLSSPEQVKKEL---IRFNIGI---DG 321

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR--VHTFYSLA 706
             K    D + ++  D+P  K +LE+R++SK+ S   + +     K      + T +S  
Sbjct: 322 IKKKATTDKKILSQSDHPFAKLVLEYRKISKLLSGVIEQIRKCCIKSGDEYFIRTTWSQT 381

Query: 707 STMTGRLASLEPNLQNIPIKT-DLGQKI---RRAFISPPTKKLISADYSQIELRILAHIA 762
           + +TGR+ S  PNLQ IP ++  L Q +   R  FI+      ++ DY+QIELRILA   
Sbjct: 382 AIVTGRIQSKSPNLQQIPKQSFSLPQCLIIPRDLFITHNNNTFVAIDYNQIELRILADFT 441

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   L + F+++ D+HR++AA     N+  ++   RR AKTI +  IYGI PF LA QL 
Sbjct: 442 KDHHLIEFFKSNTDVHRLIAAHWLKKNVNDITDDERRKAKTIVYGCIYGIGPFSLADQLH 501

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET---IFGRRIHYDEINSPKSSI 879
           +   E+  +++ +  +FP   ++ E+T       G+V T      R  +  + N  K+  
Sbjct: 502 VSLDESKAFLESFLDQFPAFKKWKEETITNASTTGFVHTINNRRRRINNLTDCNDKKTVA 561

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
              ++R A+N+PIQG+AADI +  MI + K L    +  ++LL IHDE+V EVP+  +  
Sbjct: 562 E--SKRIAVNSPIQGTAADIIKMCMIEIFKKLHSSWVGVQLLLNIHDEIVLEVPDHLLDE 619

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
               + H ME      + L VPL V ++    W
Sbjct: 620 VCVTLKHLMEHI----VKLEVPLVVTVETGKKW 648


>gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500]
          Length = 1411

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 166/285 (58%), Gaps = 9/285 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  + H  ++DG+  +Y+AF  +PLLS   DG P+NAI G+   + + L++ + +    +
Sbjct: 282 MVSKKHTLIIDGTPLLYKAFNGSPLLSV--DGQPINAIHGYTQSILRFLKDFKPD----Y 335

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+ FD    +FR E+YP YK++RP +P+ L  Q  L+   + A GIP ++I  +E+DD+
Sbjct: 336 VALCFDPRGGSFRRELYPAYKSHRPPMPDDLQSQFALIDHLSDAIGIPVLKIDRYESDDL 395

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IATYT IA + G  +TI+S DKDL+QLV+     +Y     E I    V ++ G+  E +
Sbjct: 396 IATYTRIANEAGHRITIVSDDKDLLQLVTNENISVYRPKSNEIIGESDVSERIGVDSEFV 455

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              Q+L GD+ DNIPG+PG+G KTA  ++  +G+L++IL N   +   K +E I    + 
Sbjct: 456 TTFQSLVGDTSDNIPGVPGLGPKTAISIINSFGHLKDILENVENLPT-KLQEKIQNLKDQ 514

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
             LS +LV L  +V +  PL+ L     N  +LI +L   +F ++
Sbjct: 515 IHLSYQLVTLNKNVNVP-PLDSLKFNPINKTKLIEYLDRFKFQRI 558



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 161/662 (24%), Positives = 271/662 (40%), Gaps = 145/662 (21%)

Query: 448  EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
            EIL   + +FE+E   K+ HN  +D+ + + + I ++GF  D + M+ + D+ R+     
Sbjct: 758  EILEVFRPYFESESIYKVWHNYGFDRHIFYNHNIDVKGFGGDTLHMARLWDAARNGRGGY 817

Query: 507  SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI-------------LQLW 553
            S     L    KE+L + K+SI  D    ++++   +   ++I             L+ W
Sbjct: 818  S-----LEGLSKELLDNHKTSIK-DLFGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETW 871

Query: 554  LL-----------LRPKLIVE----------KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            +            LR  L  +           +   Y  L +P   +++ ME  G+++D 
Sbjct: 872  IEYSSLDAELTWNLRENLQAKLQNMVWMNDTNMWDFYHNLWRPFGHLLTDMERRGMKVDI 931

Query: 593  DLLKQVSAEISKNL---------------------------------------------L 607
            + LK V    +K++                                             +
Sbjct: 932  EHLKTVEGVATKDIQDNMDAFQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKTKEEM 991

Query: 608  SLEENIYDLSGEKF---NLSSPKQLGDILFTKLKFPSGAKTKTG---------------- 648
             LE      + E F       PK++   L + L  P G+ T +G                
Sbjct: 992  PLEREFETENTEGFIEEGKKKPKKMRPFLLSGLGLPFGSHTASGWPAVDSASLRDLAGNP 1051

Query: 649  ----------QWKTTAQDLE---QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
                       +K  ++D E   Q     +  I ++LE   +  + S++   L   +   
Sbjct: 1052 SKGKYGKIFNHFKDKSEDKEKGEQEGIEASKAITSLLEIGSVGTLLSSFIIPL-QKLCDS 1110

Query: 696  TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
              RVHT  ++ +T TGRL+S  PNLQN P       KIR+AF   P   L+ ADY Q+EL
Sbjct: 1111 NHRVHTSVNV-NTETGRLSSKRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLEL 1169

Query: 756  RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS----------------PQM-- 797
            R+LAHI     +   F+   D H   A  ++    E V                 P +  
Sbjct: 1170 RLLAHITNCRSMINAFKIGGDFHSRTAMGMYPHVKEAVDRGDVLLEWDGDGEPPKPLLKD 1229

Query: 798  -----RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
                 RR AKT+NFSI YG +   L+    +   EA + + R++   P +  +  KT   
Sbjct: 1230 SFGAERRKAKTLNFSIAYGKTAHGLSKDWGVTLKEAQETLDRWYSDRPEVLLWQRKTIQI 1289

Query: 853  VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
               + +  T+ GR     +I++P   ++  +ERA+IN P+QG AADI  +AM+ + +   
Sbjct: 1290 ANTHKWTRTLMGRYRMLPDIDNPAKGMKGHSERASINTPLQGGAADIVMKAMLMIEEDKR 1349

Query: 913  DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              +L  ++++QIHDEL+ E PE+    A +I++  M         L V L V+ + +  W
Sbjct: 1350 LKELGFQLIMQIHDELILEGPEQHAKEAREIVMRLMSNPL--NTPLLVELVVDCRFAKTW 1407

Query: 973  QE 974
             E
Sbjct: 1408 YE 1409


>gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
 gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum]
 gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
          Length = 1369

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 174/681 (25%), Positives = 319/681 (46%), Gaps = 119/681 (17%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +++ H  L+DG+   Y+A   TP L+  ++G+ VN + GF   + K++   +        
Sbjct: 269 KRKKHTVLIDGTLMAYKANATTPSLT--NEGMNVNVLYGFMRSMLKVIDELKP---IDSI 323

Query: 62  AVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            V FD     +FR ++YP+YK+NRP  P  LL QL L+   T +  +   ++ G+E DD+
Sbjct: 324 VVCFDPKGGSSFRRDLYPEYKSNRPPTPPELLQQLLLIPEVTDSINVAFTKVDGYECDDL 383

Query: 121 IATYTYIAEKEG----------------------FAVTIISTDKDLMQLVSPTTCLYDTV 158
           +ATY+ +A +EG                        VTI++ DKD+ QLV+    +Y T 
Sbjct: 384 LATYSKLATQEGNKFIEGNDQYDPTHPESNRFNGSQVTIVTDDKDIYQLVNDNVSVYSTR 443

Query: 159 KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           +   +D + VI K+G  P K V  Q+L GD +DNIPGIP IG KTA  +++++GNL +I+
Sbjct: 444 RGSMVDKQGVIDKFGFEPNKFVTFQSLIGDKVDNIPGIPRIGEKTATDIIKKFGNLNSII 503

Query: 219 INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
            N  ++ Q K  E I    +  R+S +L  L  +V I + L+ +  +  +  +  +FL  
Sbjct: 504 ENIDQLPQ-KFIEPIRSSIDQLRISYQLAKLNDNVSINLNLDDIKYKPIDRTKFYNFLDK 562

Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS----QFSSL 334
             FT + + V               L+   ++N+ I   T      TIK +    +F+ +
Sbjct: 563 YNFTSIKSSVEK-------------LNKLFSDNQEITTSTSTTNLETIKKNYSKVEFNYI 609

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQ-------WVQKLETI 387
            D+  K +              ++S   IN      +   +D++         +++ +  
Sbjct: 610 DDENIKFD--------------EISNEEINQLKPKNVTMVRDVETARMVVSILMKQKDRF 655

Query: 388 GSASFKIITDTMDAF----HSKPIAIAISTLDQ---KDDTSFKVETIFIDLSVHTSQDST 440
            +   ++I   +  F    H K I  +I    Q    D  S     +++D+      D  
Sbjct: 656 HACDTEVIDIDLKKFSPIGHGKMICFSIYCGPQVKFHDGNS----RVWVDVMDDIEGD-- 709

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG 499
                  EIL   K++FE+E  LK+ HN  +D+ + + +GI+++GF  D + M+ + ++ 
Sbjct: 710 -------EILQVFKEYFEDESILKVWHNYAFDRHIFYNHGINVKGFGGDTLHMARLWNAS 762

Query: 500 R---SSHDIASIAQKWLSYTR---KEILKSRK--------SSI---PIDKIS-DSQVQEH 541
           R     + + +++++ L+  +   K++  +RK         SI   P+++I  DS+   +
Sbjct: 763 RMNSGGYSLEALSKELLNKPKVPIKDLFGTRKIKADGEEGKSIVIPPLERIQRDSKFILN 822

Query: 542 AIENSNVILQLWLLLRPKLIVE----------KLLHVYERLDKPMIDVVSQMEITGIQID 591
            IE S++  +L  LLR  + ++           +   Y  + +P   ++++ME  G+++D
Sbjct: 823 WIEYSSLDSELTWLLRENIHIKLRDMEWNQGTTMWDFYYLMWRPFGHLLTEMEQRGLKVD 882

Query: 592 QDLLKQVSAEISKNLLSLEEN 612
            D LK +     K    +EEN
Sbjct: 883 IDYLKSLE---EKAYTDMEEN 900



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 147/298 (49%), Gaps = 27/298 (9%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            R+HT  ++ +T TGRL+S +PNLQN P       KIR+AF   P   LI ADY Q+ELR+
Sbjct: 1072 RLHTSINV-NTETGRLSSKKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLELRL 1130

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIF-----------------GVN------IEKVS 794
            LAHI     +   F+   D H   A  ++                 G        ++ V 
Sbjct: 1131 LAHITNCKSMITAFQVGGDFHSRTAMGMYPHVKEAIDRGEVLLEWDGEGEPPKPLLKNVY 1190

Query: 795  PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
               RR AKT+NFSI YG +   L+    +  +EA + + R++   P +  +  KT     
Sbjct: 1191 ASERRKAKTLNFSIAYGKTAHGLSQDWGVTLNEAKETLNRWYEDRPEVLVWQRKTIETAH 1250

Query: 855  QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
            + G+  T+ GR     +I   K  ++   ERA+IN P+QG AADI  +AM+ +  +    
Sbjct: 1251 KYGWTRTLMGRYRQLPDIKGNKG-MKGHAERASINTPLQGGAADIVMKAMLIIEDNKRLK 1309

Query: 915  KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +L  K+++QIHDEL+ E PE+    A  I+++ M         L + L V+ + +  W
Sbjct: 1310 ELGFKLIMQIHDELILEGPEQHADEARSIMMNLMSNPLTTP--LLIDLVVDCRYAKTW 1365


>gi|56807538|ref|ZP_00365463.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI)
           [Streptococcus pyogenes M49 591]
          Length = 410

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 166/303 (54%), Gaps = 22/303 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+ +N L L+DGSS  +RAF+A  L +     + H GL  NAI GF  ML  +++  +  
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +
Sbjct: 57  --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114

Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIK 170
           EADDII T   +AE+    F VTI+S DKDL+QL    T    L    + E+    ++++
Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEILKKGCRIEEFTPAYLME 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K +
Sbjct: 175 KMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKMK 234

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLINR 287
           EN++   + A LS+ L  + T  PITI L+ ++    NGP + S   F   ++F +L   
Sbjct: 235 ENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKKG 291

Query: 288 VAT 290
           +A+
Sbjct: 292 LAS 294


>gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1]
 gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1]
          Length = 925

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 194/351 (55%), Gaps = 25/351 (7%)

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G+K N  S KQLG++LF ++   +   T  G   +T  D  +     +  +K ++E+R+
Sbjct: 498 GGDKINFGSTKQLGELLFERMGLETVIFTDKGA-PSTNDDSLKFMGSQSDFVKVLMEFRK 556

Query: 677 LSKIKSTYADSL-----PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD--- 728
            + + + +   L     P++I      VH  Y++  T+TGRL+S EPN Q  P K +   
Sbjct: 557 ANHLYNNFVSKLSLMIDPDNI------VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPT 610

Query: 729 LGQ---KIRRAFIS--PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           L Q   +I++ F S       ++  DYSQ+ELRILA I +   L  ++ +  D+H+ VA+
Sbjct: 611 LFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILAVITQDPTLIDLYRSGADLHKAVAS 670

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHR 838
           + FGV IE+VS   R  +K I F I+Y  S   L+  LR     +   E   +IK+YF R
Sbjct: 671 DAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFIKKYFKR 730

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FP + ++I  TK  V+++ YV+T+ GR  +  +I+S   S  N  ER A+N PIQG+ +D
Sbjct: 731 FPKVSKWIRDTKKHVKRHKYVKTLTGRTRNLPDIDSIDQSKANEAERQAVNTPIQGTGSD 790

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            T  ++I +++ L +  L +++ + +HD +V + P++E+   ++ + H ME
Sbjct: 791 CTLMSLILINQWLRESGLRSRICITVHDSIVLDCPKDEVLEVAKKVKHIME 841


>gi|163782128|ref|ZP_02177127.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882660|gb|EDP76165.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 291

 Score =  184 bits (467), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 104/289 (35%), Positives = 167/289 (57%), Gaps = 15/289 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+D SSFIYR F+A P L+ K DG P  AI GF   L  ++++ R E    +  V+FD
Sbjct: 6   IYLIDASSFIYRGFFALPPLTTK-DGFPTGAIYGFLRALLSIMKSERPE----YLVVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +PA T R+ ++ +YKA RP +P+ L  Q+P+++      GIP +E++G+EADD+IA    
Sbjct: 61  HPAPTKRDSLFKEYKAGRPSMPDPLRLQIPVIKELLWLMGIPTLEVEGYEADDLIAILAK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              ++GF V I + DKD++QLVS    + + +  E  + + V  K+G+PP+K+    AL 
Sbjct: 121 RFSEKGFKVKIYTPDKDMLQLVSENVVVINPMNWEVFNPDKVKDKFGVPPQKVADYLALV 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRRENILEYAETARLS 243
           GD IDN+PG+ G+G KTA  L++++G + NIL      K+   + +RE +        LS
Sbjct: 181 GDKIDNVPGVRGVGPKTAVKLIEKFGGVPNILERWEEFKKIYPEAKREEL-------ELS 233

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
            +LV   TD  +++  E   L + +  RL   L+ LE   ++  V   +
Sbjct: 234 YQLVKPMTDAEVSLSDEDFKLREPDINRLRKRLEELEMKSILKDVEKLF 282


>gi|308522710|ref|NP_001184156.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis]
          Length = 2671

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 158/620 (25%), Positives = 273/620 (44%), Gaps = 121/620 (19%)

Query: 469  IKYD-----KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
            I YD     K +L    +S+ G F+D  +  ++LD G     + ++   +L Y    +  
Sbjct: 2049 IMYDCIEQYKALLLACRVSLAGHFQDPKVACWLLDPGSKERTLHNMVTNFLPYELPLLDG 2108

Query: 523  SRKS----SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
                    S+ +   SD   +  A   + V+      L   L  EKL   + R++ P   
Sbjct: 2109 VGPGQGVQSLGLSPSSDQTGRYRAAIEAVVVFSTMNALGALLEKEKLQDAFHRVEMPTQY 2168

Query: 579  VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
             ++ +E+ G+    +  +     +   L  +E   Y L+G  F+L+S   L  +LF +LK
Sbjct: 2169 CLALLELNGMGFSTEECETQKHIMEAKLNEIEAVAYQLAGRSFSLTSHDDLAQVLFLELK 2228

Query: 639  FP----------------------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             P                      SGA+ + G+  +TA+D+ +     +P+   ILEW++
Sbjct: 2229 LPPNGDPKAQGNKKTLGYTRRAAASGARVRLGKQFSTAKDVLEKLKALHPLPGLILEWKR 2288

Query: 677  LSKIKSTYADSLPN----HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL--- 729
            ++   +     L      + N   +R++   S   T TGR++  EPN+QN+P   ++   
Sbjct: 2289 ITNALTKVVFPLQREKLLNPNLGMERIYPI-SQTHTATGRVSFTEPNIQNVPKDFEIEMP 2347

Query: 730  ----------------------GQK--------------------------IRRAFISPP 741
                                  G+K                          +R AF+  P
Sbjct: 2348 RLVGESPPSQAPGPSAYPYRNRGKKPQVNTPGPKVPVEQIPAERGVSFFVSMRHAFVPFP 2407

Query: 742  TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               +++A YSQ+ELRILAH+++   L QV  +  D+ + +AAE   ++ E V+  +R+ A
Sbjct: 2408 GGLILAAAYSQLELRILAHLSRDRRLIQVLNSGSDVFKSIAAEWKMIDPEAVTDTVRQQA 2467

Query: 802  KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
            K I + IIYG+    L  Q+ I  S+AA YI  +  R+ GI +++++T     ++G+V+T
Sbjct: 2468 KQICYGIIYGMGAKSLGEQMGIEESDAACYIDTFKSRYTGIQKFLKETVRSCTRDGFVQT 2527

Query: 862  IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE--------- 912
            I GRR +   I       ++  ER A+N  +QGSAADI + A +++ K LE         
Sbjct: 2528 ILGRRRYLPAIKDSNPYAKSHAERQAVNTTVQGSAADIVKTATVNIQKRLEETFPSVPKS 2587

Query: 913  -DHKLATK-------------------MLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
             +H +                       +LQ+HDEL++E  +E+    +QII   ME A 
Sbjct: 2588 HEHPVQAGGTGRAERLRHRPPPTRGAFFILQLHDELLYEAAQEDAIQVAQIIKKEMENA- 2646

Query: 953  LPKINLRVPLKVNIKVSNNW 972
               + L V L+V +K+  +W
Sbjct: 2647 ---MKLSVKLRVKVKMGPSW 2663


>gi|293571803|ref|ZP_06682819.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608057|gb|EFF37363.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 562

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 161/292 (55%), Gaps = 12/292 (4%)

Query: 5   NHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N L LVDG+S  +RAF+A    L R    +GL  NAI  F  M   ++Q  +     +H 
Sbjct: 4   NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTHV 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDII
Sbjct: 60  LVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDII 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPP 176
            T     +K  F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ P
Sbjct: 120 GTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLIP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I  +   +KQ K +EN++  
Sbjct: 180 KQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIND 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            E A LS+KL  + T  P+ + ++ L  E  N  +L+ F K ++F + ++++
Sbjct: 240 KEQAFLSKKLATINTSAPVEVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 31/253 (12%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462
           FK E    D++++   +  G N  T+EI+       KK         FEN+ F       
Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENQAFHSWITDP 368

Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515
             LK  ++ K   + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +  
Sbjct: 369 NRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                 K  K  +P +   +     H       I  L   L  +L  +    ++ +++ P
Sbjct: 429 DETVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++++MEI+GI++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF 
Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545

Query: 636 KLKFPSGAKTKTG 648
           K+  P   K K G
Sbjct: 546 KMGLPVIKKQKLG 558


>gi|309810235|ref|ZP_07704080.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169507|gb|EFO71555.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 214

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/218 (44%), Positives = 136/218 (62%), Gaps = 7/218 (3%)

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFR 816
           + H  KI  + + F+   DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + 
Sbjct: 1   MYHTKKI--MLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYG 58

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI  RR    +I++  
Sbjct: 59  LAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKN 118

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE
Sbjct: 119 FNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEE 178

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +     +++  M++A      L VPL  +    +NW E
Sbjct: 179 LDLIKTLVLKIMQQAA----QLDVPLIADANWGHNWYE 212


>gi|330801495|ref|XP_003288762.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
 gi|325081196|gb|EGC34721.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
          Length = 489

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 140/471 (29%), Positives = 234/471 (49%), Gaps = 67/471 (14%)

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL-SGEKFN 622
           K  +++  ++  ++ + + ME  GI  ++ + +     I + +  L+   + L  G+ F+
Sbjct: 16  KFFNIFLNIEMKILPIFAMMEYVGIGFNEKVSESGKHLIQRKIEYLDYKAHVLLPGKTFS 75

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWK---------TTAQDLEQINCGDNPIIKNILE 673
           LSS   + +ILFT LK P     K+   K         T +  LEQIN   +P+   I E
Sbjct: 76  LSSGDNVSEILFTDLKIPPPEIAKSTSRKNRLKKQYYLTNSVVLEQIN-HYHPLPSIISE 134

Query: 674 WRQLSKIKSTYADSLPNHINK----RTQRVHTFYSLASTMTGRLASLEPNLQNI--PI-- 725
           +R L+   S Y D L  ++ +    +  R+++        TGR+A   PNLQNI  PI  
Sbjct: 135 YRVLTHHISHYIDVLGKYLFRSDHYQMDRIYSTIQQTIVPTGRIAMENPNLQNISHPIDF 194

Query: 726 ----KTDLGQK------------------------------------IRRAFISPPTKKL 745
               + D  Q+                                    IR AFI     KL
Sbjct: 195 KRAPEIDFSQESIKSFNESLDRFEYLSDEHYLSLLQMDKSCDVITVSIRNAFIPANGCKL 254

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           +S DY Q+ELRIL H+++   L ++F  ++  DI + VA ++  +  + V+   R+ AK 
Sbjct: 255 LSVDYGQLELRILTHLSQDPKLMEMFNCNINIDIFKYVAHQVGNIPYDSVTDSDRQQAKH 314

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           + + I+YG+    +A++L IP  +A   ++ +   +  + EY+E  +  V QNGY+ T+F
Sbjct: 315 LVYGILYGMGIKSIASELHIPIEQARGKLENFKKTYNKLIEYLEMVEENVIQNGYIATLF 374

Query: 864 GRRIHYDEINSPKSSIRNINE--RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           GR  ++  I+S K     I++  RAA N+  QG+AADI + AMI +   L+ +    +M+
Sbjct: 375 GRVRNFSNIHSCKIDNNEISKVKRAARNSIPQGTAADIAKMAMIKIQDELDKNHFKAQMI 434

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDE++FEVPE E+  ++QII +SME      + L V L + + +  NW
Sbjct: 435 LQLHDEILFEVPENELYQSAQIIKYSMENV----VKLSVSLPIKMSIGPNW 481


>gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum]
          Length = 1076

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 228/439 (51%), Gaps = 32/439 (7%)

Query: 547  NVILQLWLL-LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ----DLLKQVSAE 601
            N+ L  WLL L  +L  EK +     L+    ++++++E TGI  D+    DLL++  +E
Sbjct: 649  NIRLYEWLLPLATRLSSEKSVS----LELESTELLARLEATGIAFDRQAGHDLLQRTKSE 704

Query: 602  ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-----SGAKTKTGQWKTTAQD 656
            +S    SLE     L+   FN  SP ++ ++LF ++         G+      + T  + 
Sbjct: 705  MS----SLEAEGRRLASMPFNFDSPSEIANVLFVRMGIQPVSGCGGSGAPRRHYSTNKEV 760

Query: 657  LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN--KRTQRVHTFYSLASTMTGRLA 714
            L+++    + I   IL+WR   K+ +  + SL N +   +   R+H  ++   T TGR+ 
Sbjct: 761  LQRL-APKHRIAAIILKWR---KLNTALSSSLQNLLRACRSNGRIHASFT-TFTGTGRVQ 815

Query: 715  SLEPNLQNIPIKTDLGQ-KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
            S+ PN+QN+     +    +R  F++PP   L+SADYSQ+ELR+LA ++K   L ++F N
Sbjct: 816  SVHPNVQNVQKDALIDSLSVRSLFVAPPGFVLVSADYSQLELRVLAGLSKDEGLCKLFRN 875

Query: 774  SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
              D  + V  + +  N     P  R+  K + ++IIYG+    L  ++   +  A   I+
Sbjct: 876  GGDFFQTV-TDRWNANTSIDVPLDRQKVKQLCYAIIYGMGAITLGERIGTTKQNAQHLIE 934

Query: 834  RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
             +F  FP +  +++ T    R++    TI GRR       S   S R   ER AIN+ IQ
Sbjct: 935  SFFKEFPKVRSWMDATLESCRRDACAVTILGRRRPLKCGESVVQSDRARAERQAINSTIQ 994

Query: 894  GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
            GSA++I + A++ + K+L+D  L  ++++Q+HDE++ E+ E   +TA + I  +M  A L
Sbjct: 995  GSASEIFKSALLKLEKNLKD--LDARIVMQVHDEVIVELNEACFSTAVERIESAMLNA-L 1051

Query: 954  PKINLRVPLKVNIKVSNNW 972
            P+    VPL V I    NW
Sbjct: 1052 PE--FPVPLSVKISSGTNW 1068


>gi|170592393|ref|XP_001900953.1| DNA polymerase I family protein [Brugia malayi]
 gi|158591648|gb|EDP30253.1| DNA polymerase I family protein [Brugia malayi]
          Length = 475

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 202/403 (50%), Gaps = 25/403 (6%)

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           S++EITGI  D++    +++++ + L  +E   Y +SG  FN  S  ++  ILF +L+ P
Sbjct: 82  SEIEITGIAFDRNKALTLNSKLQQKLTEIEAKAYGISGIPFNFGSAAEISQILFVRLQIP 141

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ--R 698
               +    + T    L+Q+     PII  ILEWR   +I +    SLP  +       R
Sbjct: 142 PPNASTGRHYSTNKIVLQQL-APKYPIISLILEWR---RINTALTTSLPILLKLCCSDGR 197

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDL-GQKIRRAFISPPTKKLISADYSQIELRI 757
           +   + +    TGR+ ++ PN+QN+     + G  IR  FI P  + L+S+DY Q+E+R+
Sbjct: 198 IRANF-ITHCCTGRVLTVHPNVQNVQKDAIIDGFSIRSLFIVPKGRILLSSDYRQLEMRM 256

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAA-----EIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           LAH++    L  +F    D   ++       E   + ++      R   K + + IIYG+
Sbjct: 257 LAHLSADPNLISLFLTKDDFFEIITNKWNKNETLHIKVD------RNKVKQLCYGIIYGM 310

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
               L+ +L I +  A   I  +F  FP +  +++K     R NG+V T+ GRR    +I
Sbjct: 311 GAISLSKELGISKQHAQQMIISFFQLFPKVRTWMDKILAMCRTNGFVSTLLGRRRFLPQI 370

Query: 873 NSPKSSIRNIN-ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            S          ER AIN  IQGS A++ + A++++ K+L      + +++Q+HDE++ E
Sbjct: 371 TSAVLQTELAQAERQAINTCIQGSVAELFKMALLNLRKNLLGTN--SSIVMQLHDEVLIE 428

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             E  I +  +II HSM     P  NLRVPL V I    +W E
Sbjct: 429 TDESSIASIVEIIKHSMTSVT-P--NLRVPLAVKISFGKSWGE 468


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 150/529 (28%), Positives = 272/529 (51%), Gaps = 46/529 (8%)

Query: 463  LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS--SHDIASIAQKWLSYTRKE 519
            +K+ HN K+D   L   G +++G   D M+ + +L + R   S  +  +A+++L+     
Sbjct: 1115 VKVLHNGKFDINFLSHNGFNVKGPIFDTMIAAKLLSATRFNWSCKLGHVAERYLNIV--- 1171

Query: 520  ILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
            + KS++ S   +D + + QV  +A  ++ V+L L+ +L+ KL  E+L  + + ++   + 
Sbjct: 1172 LDKSQQFSDWTLDPLFEEQVI-YASRDTAVLLPLYFILQEKLKAERLDMIAD-IENKCVL 1229

Query: 579  VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG----EKFNLSSPKQLGDILF 634
             V QME  GI++D D LK + A + K   +  +++ D  G      FN +S +Q+   L 
Sbjct: 1230 AVCQMEQNGIKVDLDKLKSLQAALDKENETAMKHLGDTLGVSSNPNFNYNSQRQILQALQ 1289

Query: 635  TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
             +       KT+ G  + T++     N   +P I+ + E+R+ +K  + + + +PNHI+ 
Sbjct: 1290 QQKVMD---KTRRGLIQDTSERTLSRNT-YHPAIQALREYRKTNKAVTAFTEKIPNHIDS 1345

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
             T R++   +     +GR +   PNLQ IP  +    + R  FI+    KL+ AD+SQIE
Sbjct: 1346 ATGRIYPNINQIGAESGRFSCDNPNLQQIPRDS----RFRECFIADKGNKLVIADFSQIE 1401

Query: 755  LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS- 813
            LRI A IA+   + + + +  D+H + A+ +    I +V+ + R+ AK +NF +I+G+S 
Sbjct: 1402 LRIAADIAEDRRMIEAYNSGEDLHSLTASLVKNKPISEVTKEERQLAKAVNFGLIFGMSL 1461

Query: 814  -PFR------LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
              FR          L +P   A +    +F  + GI  + E+ K    +   V T+  R 
Sbjct: 1462 AGFRNYAESCYGVVLSVP--AAREIYDSFFKSYSGITAWHERMK--AAKPISVRTLSNRL 1517

Query: 867  IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
              +D+ +  +S          +N P+QG++ADIT+ AM  +   + D  ++ KM+L IHD
Sbjct: 1518 SVFDQFSFTRS----------LNYPVQGTSADITKEAMALLVDRVAD--ISGKMILCIHD 1565

Query: 927  ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            E++ EVPE     A ++++ +ME A   K    VP K    + ++W E+
Sbjct: 1566 EIILEVPESNANKALEVLIETMETAG-NKFLRYVPCKAMGSIGDSWAEK 1613


>gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 288

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 135/216 (62%), Gaps = 1/216 (0%)

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH++    L   F    DIH   AAEIFGV++++V+ + RR+AK INF +IYG+
Sbjct: 1   IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGM 60

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL I R +A  Y+  YF R+P + +++   +   +  GYVET+FGRR++  +I
Sbjct: 61  SAFGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDI 120

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           NS  +  R   ER AINAP+QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV
Sbjct: 121 NSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEV 179

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
             E++    + I   ME A   K  L  P  +N  V
Sbjct: 180 RSEKVAFFREQIKQHMEAAAEFKTRLNTPKNLNFIV 215


>gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens]
          Length = 2724

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 2084 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2143

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 2144 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2202

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 2203 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2262

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 2263 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2322

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R + ++ F  +        + T TGR+ 
Sbjct: 2323 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 2377

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 2378 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2437

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 2438 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2497

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 2498 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2557

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 2558 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2617

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 2618 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2677

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 2678 YEVVEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2718


>gi|307702768|ref|ZP_07639719.1| putative exonuclease [Streptococcus oralis ATCC 35037]
 gi|307623681|gb|EFO02667.1| putative exonuclease [Streptococcus oralis ATCC 35037]
          Length = 362

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/288 (40%), Positives = 156/288 (54%), Gaps = 17/288 (5%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+  R E   SH  V
Sbjct: 6   LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLE--RVE--PSHVLV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K G+ P + 
Sbjct: 122 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPAQF 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++   E 
Sbjct: 182 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284
           A LS+ L  + T  PI I L+ L+    NGP    L  F   + F +L
Sbjct: 242 AFLSKTLATIETQAPIEIGLDDLV---YNGPDVENLGKFYDEMGFKQL 286


>gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
 gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
          Length = 1054

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 163/307 (53%), Gaps = 37/307 (12%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH   +L +T TGRL+S +PNLQN P       KIR AF +PP KKLI ADYSQ+ELR+
Sbjct: 749  RVHCSLNL-NTDTGRLSSRKPNLQNQPAMGKDRYKIRDAFTAPPGKKLIVADYSQLELRL 807

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIF------------------GVNIEKVSPQM-- 797
            +AHI +   + + F+   D H   A  ++                      E  +P +  
Sbjct: 808  MAHITQCKAMIEAFKAGGDFHSRTAMGMYPYVAKAVENGEALLEWDHTTGKEPPAPLLKD 867

Query: 798  -----RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
                 R++AK +NFSI YG + F LA    + R EAAD +++++     + ++ +K    
Sbjct: 868  KYGDERKNAKVLNFSIAYGKTAFGLAKDFNVSRKEAADTLEKWYSDRGEVRDWQKKAIET 927

Query: 853  VRQNGYVETIFGR-------RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             R  GY  T+ GR        +  D + S K+  R   ERAAIN PIQG+AAD+  +AM+
Sbjct: 928  ARTFGYTRTLLGRYRRLPDAMLRDDSMTSKKA--RGHAERAAINTPIQGAAADVVMQAML 985

Query: 906  SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
             VH S    +L   M+ QIHDE++ E PEE +  A +++VH ME     +  L V L+V+
Sbjct: 986  QVHHSPRLRELGWGMVSQIHDEIIVEGPEESVDEAMKLVVHLMENPF--QKPLSVALEVD 1043

Query: 966  IKVSNNW 972
              V ++W
Sbjct: 1044 ANVDDSW 1050



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR 500
           L   K+F E++++LK+ HN  +D+ VL  +GI+++G   D M M+ + ++ R
Sbjct: 393 LQLFKEFLESKNYLKVWHNYSFDRHVLFNHGINVQGLGGDTMHMARLWNTAR 444


>gi|225388911|ref|ZP_03758635.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
 gi|225045020|gb|EEG55266.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
          Length = 711

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 163/290 (56%), Gaps = 13/290 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L+  +    A H AV 
Sbjct: 2   DKLVLIDGHSILNRAFYGVPDLTNS-EGLHTNAVYGFLNIMFKILEEEK----ADHLAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+++Y  YK  R  +PE L  Q+ L++    A G+P + + G+EADDI+ T 
Sbjct: 57  FDLKEPTFRHQMYEAYKGTRKPMPEELHEQVALMKEVLTAMGVPILTLPGYEADDILGTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
              ++KEG  V+++S D+DL+QL         P T    T   +    E V +++ + P 
Sbjct: 117 AKRSQKEGIQVSVVSGDRDLLQLADEHIKIRIPKTSRGGTEVHDYYP-EDVKREYQVTPA 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GDS DNIPG+P IG KTA  ++  YG++EN   +   I+  + ++ + E+ 
Sbjct: 176 EFIDVKALMGDSSDNIPGVPSIGEKTATAIISAYGSIENAYAHLEEIRPPRAKKALEEHY 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           + A++S++L  +  D P+        +E+   P    ++K LEF  ++ R
Sbjct: 236 DMAQMSKELATICLDCPVAFEYGKTQIENLYTPEAYQYMKRLEFKSILTR 285



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 166/281 (59%), Gaps = 7/281 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D  +  Y+L+  + S+    +A+ +L  T   R ++L  ++S      + D +    A  
Sbjct: 434 DAGVAGYLLNPLKDSYGYDDLARDFLGLTVPSRADLL-GKQSLGDALWMKDPKAVSCACY 492

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
              V ++    L  +L    +  ++  ++ P+I  +S ME  G++++++ LK+  + +  
Sbjct: 493 MGYVAMKAAAPLTERLKQTGMYQLFIEIEMPLIYSLSSMEQAGVKVEREELKEYGSRLKV 552

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  LE+ IY  +G++FN++SPKQLG+ILF  +  P G KTKTG + T A  LE++   D
Sbjct: 553 QIDVLEQEIYRDTGKEFNINSPKQLGEILFGDMALPGGKKTKTG-YSTAADVLEKL-APD 610

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            P+++ IL++RQL+K+ STYA+ L   I     R+H  ++   T TGR++S EPNLQNIP
Sbjct: 611 YPVVQKILDYRQLTKLYSTYAEGLAAFIGS-DGRIHGKFNQTITATGRISSTEPNLQNIP 669

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           ++ +LG++IR+ F+       + ADYSQIELRILAH++  T
Sbjct: 670 VRMELGREIRKVFVPREGSVFVDADYSQIELRILAHMSGTT 710


>gi|221108884|ref|XP_002170257.1| PREDICTED: similar to DNA polymerase theta, partial [Hydra
           magnipapillata]
          Length = 493

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 139/482 (28%), Positives = 232/482 (48%), Gaps = 99/482 (20%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +L  E L+  +  ++ P I  +  +EI GI       +++   +   L S+++  Y LSG
Sbjct: 37  RLKREDLIKSFVDIEMPTIRTLLVIEINGIGFSDIECEKLKEILKGKLDSIQQECYKLSG 96

Query: 619 EKFNLSSPKQLGDILFTKL-KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
             F+LSSP  +   +  KL KF                         + + K ILEWR++
Sbjct: 97  SVFSLSSPADVAREVLEKLSKF-------------------------HALPKLILEWRKI 131

Query: 678 SKIKSTYADSLPNHINKRTQRV---HTFYSLA--STMTGRLASLEPNLQNIPIKTDL--- 729
           +   + +    P    KR+  V   H  ++ A   T TGR+   EPNLQN+P + D+   
Sbjct: 132 NSTLTKFV--YPVQRRKRSSDVLQMHRIFTEAIYRTCTGRVTFSEPNLQNVPKEFDIKLS 189

Query: 730 ------------GQK---------------------------------IRRAFISPPTKK 744
                       G K                                 +R  F+   +  
Sbjct: 190 SLVVKSPPHQITGNKKHKRQLVSSTRPLLSQQKDKHIGSSTTEMFTVSMRSTFVPFSSGV 249

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           +++ADY Q+ELRI+AH+++   L +    S D+ + +AAEI  +N+  V+   R+HAK I
Sbjct: 250 MVAADYEQLELRIIAHMSQDQILIKTLNESGDVFKSIAAEINHINVVDVTTVQRQHAKQI 309

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            + IIYGI    L+ QL +  ++A++Y++++ +RF G+  +I+ T    R NG+V+T+ G
Sbjct: 310 CYGIIYGIGIKALSHQLGVEENDASEYMEKFKNRFKGVKRFIQNTIEEARANGFVKTLGG 369

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED-------HKLA 917
           R+ +   INS  ++ ++  ER A+N  IQGSAAD+ + AM ++   L         +KLA
Sbjct: 370 RKRYLPAINSKITNDKSHAERQAVNTTIQGSAADLVKIAMNNIDIKLNKIFGNSCFNKLA 429

Query: 918 TK-------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
            K       ++LQIHDEL++EV +E +    ++I   ME A    I L V + V +K+ +
Sbjct: 430 EKSQPKGAYLVLQIHDELLYEVNKENVDIVIKLIRREMESA----IILTVKMPVKVKIGS 485

Query: 971 NW 972
           +W
Sbjct: 486 SW 487


>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
 gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 156/307 (50%), Gaps = 27/307 (8%)

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           I+ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AFI+ P   LI ADY 
Sbjct: 525 ISGKGGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYG 583

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF--------------------GVN-- 789
           Q+ELRILAH+A    +   F+   D H   A  ++                    G N  
Sbjct: 584 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIREAIEKKQVLLEWYPQPGENKP 643

Query: 790 ----IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
               ++      RR AK +NFSI YG +P  L+   ++  +EA + +  ++     + ++
Sbjct: 644 PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKW 703

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
            +  K   R+NG V T+ GR   +  +    SS+R   ERAAIN P+QGSAAD+   AM+
Sbjct: 704 QQARKKEARENGRVYTLLGRARVFPSLTDASSSLRGHVERAAINTPVQGSAADVAMCAML 763

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            + K+    +L  K+LLQ+HDE++ E P E    A  I+V  M K    K  L V L V+
Sbjct: 764 EISKNTRLQELGWKLLLQVHDEVILEGPTESAEVAKAIVVGCMSKPFGGKNFLNVDLAVD 823

Query: 966 IKVSNNW 972
            K + NW
Sbjct: 824 SKCAQNW 830



 Score = 42.0 bits (97), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           +++L+    FFE+    K+ HN  +D  V+  YG S+ GF  D M M+ + DS R
Sbjct: 122 RDLLNEFALFFEDPDIKKVWHNYSFDNHVIENYGFSVSGFHADTMHMARLWDSSR 176


>gi|213580148|ref|ZP_03361974.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 281

 Score =  180 bits (457), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 104/280 (37%), Positives = 155/280 (55%), Gaps = 11/280 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           + A LS KL  ++TDV + +  E L ++      L+   K
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFK 280


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 159/556 (28%), Positives = 287/556 (51%), Gaps = 73/556 (13%)

Query: 452 YLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSS--HDIASI 508
           +LK+  E++    +GHN+K+D K +   + +  +   D  + S +L  G +S  H ++++
Sbjct: 72  FLKEVLESKGI--VGHNLKFDLKFLATNFDVYPKVVFDTFIASKILAKGDNSQKHSLSAV 129

Query: 509 AQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-- 564
           A   +  T +E+ K+ ++S P  ++ ++  Q+ E++ ++  V+  ++     +L  E+  
Sbjct: 130 A---VRLTDEEVDKTYQTS-PWWVENLTKEQI-EYSAKDIEVLRSIFREQVVRLNEEQTH 184

Query: 565 ------------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
                       +++    L+   +  +  +E++GI ID+   KQ+S  I KN  +  +N
Sbjct: 185 LKSSGETYKVFGVVNPVAALEMAFLPCLVSIELSGIPIDE---KQLSNLI-KNSKTTFQN 240

Query: 613 IYDLSGEKFNLS--SPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           +Y     K+ +   SP+Q+ + L  KL  K P   KT+ G +  ++QD+      D P +
Sbjct: 241 LYIEFKRKYYIDPFSPQQVANFLTKKLGLKLP---KTEKGSF--SSQDVHLKPYEDKPEV 295

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           K +L  R   K      + L  ++  +  RV+  +      TGR++S +PNLQNIP    
Sbjct: 296 KTLLSIRYEKKTLDK-LEELSKYV--KNSRVYGEFKQIGASTGRMSSYKPNLQNIP---- 348

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
             + ++  F +P     I ADYSQIELRI A   K   + + F+   D+H++ A+ I G 
Sbjct: 349 --KNLKSIFRAPDGYLFIIADYSQIELRIAAEYTKDKSMIKAFQEKKDLHKLTASVITGK 406

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGI 842
           + ++++ + R  AK INF +IYGISP  L    +      I  S+A  + + +F+ +P  
Sbjct: 407 DYQEITKEERNLAKAINFGLIYGISPKSLVEYAKNNYDIDITLSQAKTFHENFFNFYPKF 466

Query: 843 HEYIEKTKNFVRQNGY--VETIFGRR-IHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            E+ E  KN++ ++ +  VET+ GR+ I Y   +             A+N PIQGS +D+
Sbjct: 467 KEWHENVKNYLEKHKFIQVETLLGRKLIAYKFTD-------------AVNYPIQGSGSDL 513

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + A++  +KSL D  L  K++  +HDE+V EV +E++    +I+  SMEKA    +   
Sbjct: 514 LKMAVVLFYKSLLD--LDAKVVNLVHDEIVVEVKQEDVDKVQEILSQSMEKAGRYLLK-E 570

Query: 960 VPLKVNIKVSNNWQEE 975
           VP++  I VS +W +E
Sbjct: 571 VPVEFEINVSKSWSKE 586


>gi|222616936|gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group]
          Length = 2044

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 207/427 (48%), Gaps = 47/427 (11%)

Query: 552  LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
            L  +LR  L+ + L  + E ++ P+++V++ ME+ GI  D D   +    I + L  LE+
Sbjct: 1601 LCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEK 1660

Query: 612  NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW--KTTAQDLEQINCGDNPIIK 669
              Y L+G+ F+L++   + D+L+T LK P       G+    T  Q L+ +    +PII 
Sbjct: 1661 EAYKLAGKSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLR-DQHPIIS 1719

Query: 670  NILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPI 725
             I E R L+K+ +    S+ +   +  ++QR  +   +   ST TGRL+  EPNLQ   +
Sbjct: 1720 VIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQENWL 1779

Query: 726  KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAE 784
                               L++ADYSQIELR++AH +K T L ++      D+  M+A+ 
Sbjct: 1780 -------------------LVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASR 1820

Query: 785  IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
              G     +  + R   K   + I+YG+    LA QL     +AA  I+ +   FPG+  
Sbjct: 1821 WTGKAESLICSKERETTKRFIYGILYGMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSS 1880

Query: 845  YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            ++ +     R  GYVET+ GRR    +I +  S  +   +R A+N+  QGSAADI + AM
Sbjct: 1881 WLHEAVASCRHKGYVETLMGRRRFLSKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAM 1940

Query: 905  ISVHKSLEDHKLA--------------------TKMLLQIHDELVFEVPEEEITTASQII 944
            I VH ++ +                          ++LQ+HDELV EV    +  A +++
Sbjct: 1941 IKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLL 2000

Query: 945  VHSMEKA 951
               ME +
Sbjct: 2001 QTVMENS 2007


>gi|108862506|gb|ABA97168.2| DNA polymerase I family protein, expressed [Oryza sativa Japonica
            Group]
          Length = 2065

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 207/427 (48%), Gaps = 47/427 (11%)

Query: 552  LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
            L  +LR  L+ + L  + E ++ P+++V++ ME+ GI  D D   +    I + L  LE+
Sbjct: 1622 LCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEK 1681

Query: 612  NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW--KTTAQDLEQINCGDNPIIK 669
              Y L+G+ F+L++   + D+L+T LK P       G+    T  Q L+ +    +PII 
Sbjct: 1682 EAYKLAGKSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLR-DQHPIIS 1740

Query: 670  NILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPI 725
             I E R L+K+ +    S+ +   +  ++QR  +   +   ST TGRL+  EPNLQ   +
Sbjct: 1741 VIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQENWL 1800

Query: 726  KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAE 784
                               L++ADYSQIELR++AH +K T L ++      D+  M+A+ 
Sbjct: 1801 -------------------LVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASR 1841

Query: 785  IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
              G     +  + R   K   + I+YG+    LA QL     +AA  I+ +   FPG+  
Sbjct: 1842 WTGKAESLICSKERETTKRFIYGILYGMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSS 1901

Query: 845  YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            ++ +     R  GYVET+ GRR    +I +  S  +   +R A+N+  QGSAADI + AM
Sbjct: 1902 WLHEAVASCRHKGYVETLMGRRRFLSKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAM 1961

Query: 905  ISVHKSLEDHKLA--------------------TKMLLQIHDELVFEVPEEEITTASQII 944
            I VH ++ +                          ++LQ+HDELV EV    +  A +++
Sbjct: 1962 IKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLL 2021

Query: 945  VHSMEKA 951
               ME +
Sbjct: 2022 QTVMENS 2028


>gi|224050209|ref|XP_002195724.1| PREDICTED: similar to polymerase (DNA directed) nu [Taeniopygia
           guttata]
          Length = 631

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 201/380 (52%), Gaps = 37/380 (9%)

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L  + L +++  L+ P+I +++ ME   I +D+  LK+ S  +   L  LE   ++++GE
Sbjct: 236 LKAQGLWNLFCTLELPLIKILAVMETHKIYVDKQELKKTSEILGLRLKELEREAHEVAGE 295

Query: 620 KFNLSSPKQLGDILFTKLKFPSGA----KTKTGQWKTTA-------QDLEQINCGDNPII 668
           +F L+S  QL ++LF KLK  +      +T+  Q  +T+       QDL       +P+ 
Sbjct: 296 RFLLTSSCQLREVLFDKLKLHTLCEKLQRTEIQQLVSTSEVVLNKLQDL-------HPLP 348

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI---PI 725
           K ILE+RQ+ K+KSTY D L   + K    + + ++   T+TGRL++  PN+Q I   P+
Sbjct: 349 KIILEYRQVHKMKSTYVDGLRTCMKKGF--ISSTWNQTGTVTGRLSAKHPNIQGISKHPV 406

Query: 726 KTDLGQKI------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
                Q I            R  F+S      ++AD+S IELRILA ++    L ++F+ 
Sbjct: 407 TIAKKQYIKGKEEDIITISPRTLFVSKKGCTFLAADFSHIELRILADLSSEPELLKLFQE 466

Query: 774 S--LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DI   +A++  G+  E+V    R  AK I +S++YG    RLA  L I   +A+ +
Sbjct: 467 PEITDIFATLASQWKGIPSEQVKHADREQAKRIVYSVVYGAGKERLADCLGITPVQASQF 526

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ +  ++  +HE+ +KT    R  GYV +I GR+     IN+    +R   ER A+N  
Sbjct: 527 IESFMQKYKKVHEFTKKTIEQCRNKGYVVSIMGRKRPLANINAQDYKLRTQAERQAVNFV 586

Query: 892 IQGSAADITRRAMISVHKSL 911
           +QGSAAD+ + AM+ +  S+
Sbjct: 587 VQGSAADLCKMAMVKIFASI 606


>gi|3510695|gb|AAC33565.1| DNA polymerase theta [Homo sapiens]
          Length = 1762

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1122 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1181

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1182 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1240

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1241 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1300

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 1301 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 1360

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R + ++ F  +        + T TGR+ 
Sbjct: 1361 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 1415

Query: 715  SLEPNLQNIP------IKTDLGQK------------------------------------ 732
              EPN+QN+P      + T +G+                                     
Sbjct: 1416 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 1475

Query: 733  ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                      +R AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +A
Sbjct: 1476 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 1535

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            AE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI
Sbjct: 1536 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 1595

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGSAADI + 
Sbjct: 1596 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 1655

Query: 903  AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929
            A +++ K LE        H     ML                          LQ+HDEL+
Sbjct: 1656 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 1715

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +EV EE++   +QI+ + ME A    + L V LKV +K+  +W E
Sbjct: 1716 YEVVEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 1756


>gi|218186696|gb|EEC69123.1| hypothetical protein OsI_38041 [Oryza sativa Indica Group]
          Length = 1986

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 207/427 (48%), Gaps = 47/427 (11%)

Query: 552  LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
            L  +LR  L+ + L  + E ++ P+++V++ ME+ GI  D D   +    I + L  LE+
Sbjct: 1543 LCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEK 1602

Query: 612  NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW--KTTAQDLEQINCGDNPIIK 669
              Y L+G+ F+L++   + D+L+T LK P       G+    T  Q L+ +    +PII 
Sbjct: 1603 EAYKLAGKSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLR-DQHPIIS 1661

Query: 670  NILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPI 725
             I E R L+K+ +    S+ +   +  ++QR  +   +   ST TGRL+  EPNLQ   +
Sbjct: 1662 VIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQENWL 1721

Query: 726  KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAE 784
                               L++ADYSQIELR++AH +K T L ++      D+  M+A+ 
Sbjct: 1722 -------------------LVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASR 1762

Query: 785  IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
              G     +  + R   K   + I+YG+    LA QL     +AA  I+ +   FPG+  
Sbjct: 1763 WTGKAESLICSKERETTKRFIYGILYGMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSS 1822

Query: 845  YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            ++ +     R  GYVET+ GRR    +I +  S  +   +R A+N+  QGSAADI + AM
Sbjct: 1823 WLHEAVASCRHKGYVETLMGRRRFLSKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAM 1882

Query: 905  ISVHKSLEDHKLA--------------------TKMLLQIHDELVFEVPEEEITTASQII 944
            I VH ++ +                          ++LQ+HDELV EV    +  A +++
Sbjct: 1883 IKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLL 1942

Query: 945  VHSMEKA 951
               ME +
Sbjct: 1943 QTVMENS 1949


>gi|288818109|ref|YP_003432457.1| 5'-3' exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|288787509|dbj|BAI69256.1| 5'-3' exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|308751710|gb|ADO45193.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 289

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/282 (39%), Positives = 158/282 (56%), Gaps = 9/282 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGS+FIYR+F+A P LS K DG P  AI GF   +  +L+  +       F V FD
Sbjct: 4   LCLLDGSAFIYRSFFALPPLSTK-DGFPTGAIYGFMRAVLHILKAEKTRC----FVVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +PA T R E    YK+ RP +P+ L  Q+P+++   +  GIP IE+ G+EADD+I   T 
Sbjct: 59  HPAPTIRKEASSTYKSKRPSMPDPLRLQIPVIKELLKLLGIPVIEVPGYEADDVIGYITE 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   GF+V I S DKD++QLVS    + + +  E  DI+ V +K+G+ P  +  L AL 
Sbjct: 119 RALSFGFSVRIYSPDKDILQLVSQKVQVINPISGEVFDIKRVEEKFGVKPHLIPHLLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD  DNI G+ GIG KTA  +L++YG++ENIL N    K      +     +   LS  L
Sbjct: 179 GDQTDNIEGVKGIGKKTAIKVLEKYGSIENILRNFDDFKASFPHAD----RDKLELSYYL 234

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           V L+    +TI  + L +++ N   L + L  LE   LI  V
Sbjct: 235 VKLQPPPELTIEEDQLCMKEPNMEALKAKLLELEMKSLIKDV 276


>gi|260794541|ref|XP_002592267.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
 gi|229277483|gb|EEN48278.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
          Length = 595

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 144/563 (25%), Positives = 258/563 (45%), Gaps = 76/563 (13%)

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I+M G F+D  +  ++LD          + +   +    ++L+  +       +S + VQ
Sbjct: 30  ITMNGNFQDPKVADWLLDPDAKVKRFDEMVKGQFTPQESDLLQGLRECFGEGSLSMT-VQ 88

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH------VYERLDKPMIDVVSQMEITGIQIDQD 593
                 +   L+        + + KLL        +  ++ P +  ++++E+ G   + +
Sbjct: 89  NAGSGQTRAALECVFTFHLMVKLSKLLEEQGLSTAFRNVEMPSLVALARLELNGAGFNPE 148

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-----PSGAKTKTG 648
             +     +   L  LEE  + L+G  F L+S K +  +L+ + K      PS       
Sbjct: 149 ECETQCQVMKDRLRMLEERAHKLAGHTFALNSTKAVDKVLYEEKKLEINEDPSTNSQPQE 208

Query: 649 QWKTTAQD-LEQINCGD--NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +  T+ +  LE++      +P+   IL+W+ +S + +        ++      +   YS 
Sbjct: 209 RLSTSRKGVLEKLKTSHPLHPLPGVILKWKHISNLLNKVTPLQKKNVYNPRLNMDRIYST 268

Query: 706 AS--TMTGRLASLEPNLQNIP------IKTDLGQK-----------------IRRAFISP 740
            +  T TGR+A  +PNLQ IP      + TD   +                 +R AFI  
Sbjct: 269 CNLHTATGRVAFHDPNLQFIPKEFEIEMPTDTNNEDGPPAAGEETMSKRKVCMRHAFIPF 328

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
               +++ADYSQ+E+RI+AH++K + L Q   +  D+ + +A++  GV +E VS ++R+ 
Sbjct: 329 KGGVILAADYSQLEVRIMAHLSKDSKLTQALNSGQDVFKAIASQWKGVAVEHVSDKLRQQ 388

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK + + IIYG+ P  L  +L + + E    I+ +   + GI  Y + T +  ++NGYV+
Sbjct: 389 AKQLYYGIIYGMGPKTLGEKLGVSKEEGKRRIETFKSSYTGIQRYRQTTVDQCKRNGYVQ 448

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED------- 913
           T+  RR +  +IN       +  ER A N  IQGSAAD+ ++AM+ + + L+        
Sbjct: 449 TMAERRRYLPDINGEDYYKLSQAERQAFNTTIQGSAADLVKKAMVLIDQRLQQEFPDTRR 508

Query: 914 ---HKLATK---------------------MLLQIHDELVFEVPEEEITTASQIIVHSME 949
              H  +T                      ++LQ+HDEL++EV EE+    +QI+ H ME
Sbjct: 509 SHRHGESTAAAADTDKRRSQQPSSPPRGAYLILQLHDELIYEVHEEDEQKVAQIVKHKME 568

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
           KA    + L V L V +KV   W
Sbjct: 569 KA----MELSVELPVKVKVGPTW 587


>gi|47216119|emb|CAG11187.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2382

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 159/643 (24%), Positives = 278/643 (43%), Gaps = 161/643 (25%)

Query: 469  IKYD-----KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-- 520
            I YD     K+++   GIS+ G  ED  +  ++LD G     + ++      Y  +E+  
Sbjct: 1754 IAYDIIRTYKVLVLSCGISLEGSCEDPKVACWLLDPGSEERTLPNMV---TVYCPEELPL 1810

Query: 521  ---LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
               L S  +  P  + S + V  +A     V+ +L  LLR     + +L  +  ++ P  
Sbjct: 1811 LGGLGSSHTHCPRVRASTASVLTYA-----VMGRLTGLLRE----DGVLDHFRSVEMPSQ 1861

Query: 578  DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
              ++ +E+ G+       ++    +   L +LE   Y L+G  F+L+S   +  +LF +L
Sbjct: 1862 VCLALLELNGVGFSAAECERQKHVMQAKLAALEGQAYRLAGHSFSLTSVDDVAQVLFLEL 1921

Query: 638  KFP-----SGAKTK----------------TGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
              P     +G+K+K                  Q+ TT   LE++    +P+   ILEWR+
Sbjct: 1922 HLPPNGDVNGSKSKKTLGYGRRGGGGRVRLGKQFSTTKDVLEKLR-PLHPLPGLILEWRR 1980

Query: 677  LSKIKSTYADSLPNHINKRTQRVHT------FYSLASTMT-------------------- 710
            ++   +     L     +R ++ H+       Y +A T T                    
Sbjct: 1981 ITNALTKVVFPL-----QREKKHHSALSMDRIYPIAQTHTATGNPQTPEPCETCNMRWLS 2035

Query: 711  -----GRLASLEPNLQNIP----------------------IKTDLGQK----------- 732
                 GR++  EPN+QN+P                      +    G+K           
Sbjct: 2036 LVLLPGRVSFTEPNIQNVPKDFEIQMATVVCESPPSQDGRHLAARKGKKRRSAVPSGAAA 2095

Query: 733  -----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
                       +R AF+      +++ADYSQ+ELR+LAH++K   L QV     D+ R +
Sbjct: 2096 GSEQGPAFSVSMRHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLNGGADVFRCI 2155

Query: 782  AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            AAE   V+ + V+  +R+ AK I + IIYG+    L  Q+ +  ++AA YI+ +  R+ G
Sbjct: 2156 AAEWKSVDPDSVTDGLRQQAKQICYGIIYGMGAKSLGEQMGVEENDAACYIETFKSRYRG 2215

Query: 842  IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            I+ ++++T     +NGYV+T+ GRR +   I +  + ++   ER A+N  +QGSAADI +
Sbjct: 2216 INAFLKETVKNCGKNGYVQTLMGRRRYLPGITNTNAHVKAHAERQAVNTTVQGSAADIVK 2275

Query: 902  RAMISVHKSLED--------------------------------HKLATKMLLQIHDELV 929
             A +++ K L                                  H      +LQ+HDEL+
Sbjct: 2276 LATVNIQKRLRQTYPAAPLSHQHPAPVMGRFCGAGSSRRRAVTRHPRGGYFVLQLHDELI 2335

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +E  +E++   +QI+   ME A    + L V ++  +KV  +W
Sbjct: 2336 YETTDEDVIQVAQIVKREMETA----VKLYVKMRAKVKVGPSW 2374


>gi|94676906|ref|YP_588585.1| DNA polymerase I [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220056|gb|ABF14215.1| DNA polymerase I [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 306

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/286 (37%), Positives = 166/286 (58%), Gaps = 13/286 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGS ++YRA++A PLL+  + G P  AI G  NML  L +     SI    A+IFD
Sbjct: 2   LLLVDGSFYLYRAYHAFPLLTN-NLGEPTGAIYGVINMLNSLFKQYSTSSI----AIIFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                FR++I+ DYK NR ++ + L  Q+ PL ++  Q+ G+P + ++G E+DD+I T  
Sbjct: 57  AYGQNFRHKIFHDYKLNRTRMSKDLSCQIDPLYKI-IQSMGLPLLVVKGVESDDVIGTLA 115

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           + A      V I + DKD+ QLVSP   L+++    ++  + V KK+G+ PE ++   AL
Sbjct: 116 HQAMCNNINVLISTGDKDMAQLVSPKIHLFNSTMNMRLGPKEVQKKFGVLPELIIDYIAL 175

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAET 239
            GD  DNIPG+PGIG KTA +LLQ++G L+ +  N  ++      + K     +  Y E 
Sbjct: 176 VGDKSDNIPGVPGIGKKTAKILLQQFGGLKFLYQNLHKLNHFNLCRNKNLATKLDNYREK 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           A LS +L  +RT+V + I  + LI+++ +  +LI   K  EF + I
Sbjct: 236 AFLSYQLATIRTNVMLDITYDQLIVKEPDYNQLIKLFKHYEFKRWI 281


>gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus]
          Length = 467

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/468 (28%), Positives = 228/468 (48%), Gaps = 59/468 (12%)

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           N  ++  L + L  KL    L  ++  L+ P+I +++ ME   I +D++ +++ SA +  
Sbjct: 6   NLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGA 65

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK----TG------------ 648
            L  LE+  + ++GE+F + S  QL +ILF KLK    ++ K    TG            
Sbjct: 66  RLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMT 125

Query: 649 QWKTTAQDLEQINCG---DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           QW+T+        C    D+ ++  +     L  I ST+  +                  
Sbjct: 126 QWRTSGVPAGPHCCATTADSCLLSWLYPIGLLGSISSTWNQT------------------ 167

Query: 706 ASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADY 750
             T+TGRL++  PN+Q I   PIK                   R  F+S      ++AD+
Sbjct: 168 -GTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEGHTFLAADF 226

Query: 751 SQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           SQIELRILAH++    L ++F+ S   D+   + ++   + IE+V+   R   K + +S+
Sbjct: 227 SQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSV 286

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YG    RLA  L +   EA  +++R+  ++  I ++ +         GYV +I GRR  
Sbjct: 287 VYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVTSILGRRRP 346

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDE 927
              I +    +R   ER A+N  +QGSAAD+ + AMI +  ++     L  +++ QIHDE
Sbjct: 347 LPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDE 406

Query: 928 LVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           L+FEV + ++   + +   I+ S+++    ++ L+VPLKVN+ V  +W
Sbjct: 407 LLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 454


>gi|332295728|ref|YP_004437651.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178831|gb|AEE14520.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 296

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/262 (38%), Positives = 154/262 (58%), Gaps = 9/262 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + L+D  S IYRA+YA P L+    G+P NA+ GF N+L KL+    KE       V
Sbjct: 8   EKTICLIDAHSVIYRAYYALPELTSSA-GIPTNALYGFINILLKLI----KEEDPYTIFV 62

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD P  TFR+E + +YKA+RPK+PE L+ Q+ L++   +   I   E+ G+E+DD++A+
Sbjct: 63  AFDSPEKTFRHESFKEYKASRPKMPESLISQVLLIKEFLKLMNIRFYEVPGYESDDLVAS 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                EK+ + V I++ D DL+QLVS    +    K     EK D++  + K+GI P ++
Sbjct: 123 MAKQIEKKDYDVLILTGDFDLLQLVSERVKVLIMKKGISDVEKYDLDKFLTKFGIRPNQI 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             ++AL+GDS D IPG+ GIG KTA  +L+++  +E +L N  R K K+ RE I E  E 
Sbjct: 183 ADMKALSGDSSDEIPGVKGIGKKTAIEILRQFNTVEELLKNIDRFKNKRYRELIYENKEK 242

Query: 240 ARLSRKLVMLRTDVPITIPLEH 261
               + + +L TDV + I +E 
Sbjct: 243 ILFYKSITLLDTDVSLEIEIEE 264


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 178/691 (25%), Positives = 321/691 (46%), Gaps = 125/691 (18%)

Query: 351 FLERLQK-LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
            LE+  K L+ YP  N  Y  I + + +   +++LET       I T  +D   S+   I
Sbjct: 31  LLEKYSKNLTPYP--NADYEIISDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLI 88

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
            I+  ++          I I+    T++++             L++F E+    K+GHN+
Sbjct: 89  QIAAPNRP--------VILIEFRGITNKET-------------LRRFIEHPKIPKVGHNL 127

Query: 470 KYDKLVLHRY-GI--SMRGFEDIMLMSYVLDSG--------------------RS----- 501
            ++   L ++ GI  +   + D MLMS +L +G                    RS     
Sbjct: 128 AFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDLTRSIKNKK 187

Query: 502 ------------SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
                       S+ +  +  + L Y+  + L+      P+   +  Q+Q +A  ++ V+
Sbjct: 188 KLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGKPL---TQEQLQ-YAANDAAVV 243

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD----LLKQV------S 599
           L L   LR K+I  +L    + ++   +  V+QM + G+ +D D    L K++      +
Sbjct: 244 LPLREALRNKIIDNQLTDAIQ-VELGALARVAQMGLMGMGLDLDRWGELAKEIETRREDA 302

Query: 600 AEISKNLLSLEENIYDLSGEK--FNLSSPKQLGDILFTKLKFPSGAKTKTG-QWKTTAQD 656
           A+I+  +L  +    +L G +   NL S +Q+             A  + G    +T++D
Sbjct: 303 AKIACQVLKPDHAQLNLFGGEASINLDSNEQV-----------IAALARLGIHTDSTSKD 351

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  ++P +  I+E+R  SK  S++ + LP  +N  T R+H   +     +GR +  
Sbjct: 352 TLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAASGRFSFS 411

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQ IP +    ++ R  F+  P  KLI ADYSQIELRI A IA  + +   + N  D
Sbjct: 412 NPNLQQIPRE----RQYRSCFVPAPGYKLIIADYSQIELRIAAEIANDSVMIDAYCNEKD 467

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI----------PRS 826
           +HR+ AA + G +I++V+ Q R+  K +NF +IYG+     AT+LRI             
Sbjct: 468 LHRLTAALVSGKDIDEVTKQERQLGKAVNFGLIYGMG----ATKLRIYAETNYGVSMTFD 523

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY--VETIFGRRIHYDEINSPKSSIRNINE 884
           EA  +   +F  +PG+H++ + T   +R      + T+ GR   + +   P +S+     
Sbjct: 524 EAQRFRDNFFKGYPGLHQWHQDTACKLRTTKVKDIRTLSGRLRRWKD-EPPLTSL----- 577

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
              +N P+QG++ADIT+ A+  ++  L++  +    ++ +HDE+V EVPE+ +   S ++
Sbjct: 578 ---LNTPVQGTSADITKLALHKLNSDLDE--IGGFPIVVVHDEIVLEVPEDHVAEGSAML 632

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +M  A   +    VP+ V   ++++W E+
Sbjct: 633 EEAMVSAG-KRFLKSVPVVVEAAIADSWAEK 662


>gi|126332210|ref|XP_001374207.1| PREDICTED: similar to polymerase (DNA directed) nu, [Monodelphis
           domestica]
          Length = 816

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 212/391 (54%), Gaps = 25/391 (6%)

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           +N  ++ ++ + L  KL V  L  ++  L+ P+I +++ ME    Q+D++ +K+ S  + 
Sbjct: 402 KNLRILYRITVDLCSKLKVCGLWQLFYTLELPLIPILAVMETHKFQVDKEEMKRTSKLLG 461

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT------GQWKTTAQDL 657
             L  LE+  +  +GE+F ++S  QL ++LF KLK     K+KT       +  +T++ +
Sbjct: 462 CRLKELEQEAHVAAGEQFLVTSNNQLREVLFDKLKLHLLCKSKTLPKTELQKHPSTSEAV 521

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                  +P+ K ILE+RQ+ K+KST+ D L + +  R   +   ++   T++GRL++ +
Sbjct: 522 LNALQDLHPLPKIILEYRQIHKVKSTFVDGLLSCM--RKGFIAPTWNQTGTVSGRLSAKK 579

Query: 718 PNLQNI---PIKTDLGQ------------KIRRAFISPPTKKLISADYSQIELRILAHIA 762
           PN+Q I   PI+    Q              R  FIS      ++AD+SQIELRILAH++
Sbjct: 580 PNIQGISKHPIQITKHQYEQGKEDEKTTVSPRTMFISSKGYTFLAADFSQIELRILAHLS 639

Query: 763 KITPLYQVFEN--SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
               L ++F+   SLD+   + ++  G+ +E+V+   R   K I +S++YG    RLA  
Sbjct: 640 CDPELLKLFQEPESLDVFMSLTSQWKGIPLEQVTHVEREQTKRIVYSVVYGAGKERLAAC 699

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L +   +++ +I+ +  ++  IH++ ++T       GYV +I GRR     IN+    +R
Sbjct: 700 LGVTSLQSSQFIESFLQKYKKIHDFTQETIMQCHHKGYVTSIMGRRRPLPNINAKDYRLR 759

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSL 911
              ER A+N  +QGSAAD+ + AMI +  S+
Sbjct: 760 TQAERQAVNFVVQGSAADLCKIAMIRIFTSI 790


>gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 221

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 138/221 (62%), Gaps = 4/221 (1%)

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +ELRI+A ++    L + F +  D H+ VA+ ++G+ +E+++   R H K +++ + YG+
Sbjct: 1   MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGL 60

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S + LA QL+I   EA     +YF  F  +HEY+E   +  R+ GY ETI+GRR ++  +
Sbjct: 61  STYGLAQQLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGL 120

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            SP  ++R+  ERAA+NAPIQGSAADI + AMI    SL D  L ++++LQIHDELV E+
Sbjct: 121 KSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEI 180

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              E   A+ ++ ++ME A    + + VPL  +  + ++WQ
Sbjct: 181 APGEAEQATALVRNAMEHA----VTMAVPLDASTGIGSDWQ 217


>gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa]
 gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 160/309 (51%), Gaps = 27/309 (8%)

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
           ++++ ++ RVH   ++ +T TGRL++  PNLQN P       KIR+AFI+ P   LI AD
Sbjct: 523 SNLSGKSGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 581

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---------PQ---- 796
           Y Q+ELR+LAH+A    +   F+   D H   A  ++    E +          PQ    
Sbjct: 582 YGQLELRVLAHLANCKSMLDAFKAGGDFHSRTAVNMYPHIREAIEKKRVLLEWYPQPGED 641

Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                         RR AK +NFSI YG +P  L+   ++  +EA + +  ++     + 
Sbjct: 642 KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVL 701

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           ++ +  K   R++G V T+ GR   +  +    SS+R   ERAAIN P+QGSAAD+   A
Sbjct: 702 KWQQARKKEAREDGRVHTLLGRARVFPSLTDASSSLRGHVERAAINTPVQGSAADVAMCA 761

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ + K+    +L  K+LLQ+HDE++ E P E    A  I+V  M K    K  L+V L 
Sbjct: 762 MLEISKNNRLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFGGKNFLKVDLA 821

Query: 964 VNIKVSNNW 972
           V+ K + NW
Sbjct: 822 VDAKCAQNW 830



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           +++L     FFE+    K+ HN  +D  V+  YGIS+ GF  D M M+ + DS R
Sbjct: 122 RDLLHEFAPFFESPDIKKVWHNYSFDNHVIENYGISVSGFHADTMHMARLWDSSR 176


>gi|225629756|ref|ZP_03787705.1| DNA polymerase I [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591390|gb|EEH12481.1| DNA polymerase I [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 261

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/248 (41%), Positives = 153/248 (61%), Gaps = 8/248 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE    ++DG  F++RA+Y  P L     G+P+  + GF NM+ K + +S   +IA    
Sbjct: 2   KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHSDYLTIA---- 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D     FR+ +YP+YKANR   PE L PQ  ++R A +AF +   EI+G+EADDIIA
Sbjct: 57  --LDAGKKNFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114

Query: 123 TYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T     A  + F V ++S+DKDL QL++    ++D +K   ID + VI+K+G+   K++ 
Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L +LTGD+ DNIPG+PGIG KTAA LL E+ +L NI+ N   I+Q + R  + E+ E A 
Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234

Query: 242 LSRKLVML 249
           +SR+L+ L
Sbjct: 235 ISRELLSL 242


>gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium rectale DSM 17629]
          Length = 724

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 147/581 (25%), Positives = 264/581 (45%), Gaps = 69/581 (11%)

Query: 456 FFENEHFLKIGHNIKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           +  N     I HNIK+D K+V  ++G  +   + D  +  +VL+     H +  +  K++
Sbjct: 144 YLANGSLKCINHNIKFDDKVVTFQWGQRIANVWWDTNIAGWVLNEN-EKHRLKPMYNKYI 202

Query: 514 --SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR----------PKLI 561
                  E        IP + I    +   AI  +N   + W L +          P+  
Sbjct: 203 LNGEGSDEDFGDLFEGIPCNYIP---IDIFAIYGANDGFKTWALYQFQKKYLREDHPRAD 259

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS------------- 608
             KL HV+  ++ P+IDV   ME+ G++I +D  K++S + +  +               
Sbjct: 260 YRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKLCDEYVAKFD 319

Query: 609 --LEENIYDL----SGEKFNLSSPKQLGDILFTKLKF-------PSGAKTKTGQWKTTAQ 655
             +EEN   +      +K N +SP+Q+  + +   K        P G   K  Q      
Sbjct: 320 KFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDKIVQQHRNKA 379

Query: 656 DLEQINCGDNPI--IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                  G+  I  + N   +++  K+  TY D +P     +T  VHT Y+     TGR 
Sbjct: 380 KKAGTKKGEEFIQFLDNYQRYKECGKLLGTYIDKIPEVKCAKTNAVHTTYNQYGAKTGRF 439

Query: 714 ASLEP----NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           +S +     NLQNIP      + IR+ F +    K +  D+SQIE R+L++++    + +
Sbjct: 440 SSSDTVTKINLQNIPSHE---KSIRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQE 496

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSP--------QMRRHAKTINFSIIYGISPFRLATQL 821
            +    D++ ++ ++++GV  E               +H +T   S++ GI   R A  +
Sbjct: 497 AYREGKDLYAIMGSKVYGVPYEDCREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAKAI 556

Query: 822 RIPRSEAADYIKR----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
                ++A++ ++    ++  FP I +   K +    + GYV TI GR+    E+  P  
Sbjct: 557 GEQFDKSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEYGYVTTIQGRKRRLPEMQLPDH 616

Query: 878 SIRNINE--RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
                 E  R ++NA IQGS+ADI + AMI+++   +   L   M++ +HDEL+ EVPE+
Sbjct: 617 DDYRYQEAHRQSLNAVIQGSSADIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPED 676

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            I   + ++V++M++     I+L  P+ V+ +V++ W  EN
Sbjct: 677 HIKEGADLLVNTMKRVGHSLIDL--PMSVDAEVNDYWYGEN 715


>gi|119879523|ref|XP_615375.3| PREDICTED: DNA polymerase theta [Bos taurus]
 gi|297470916|ref|XP_002684835.1| PREDICTED: polymerase (DNA directed), theta-like [Bos taurus]
 gi|296491393|gb|DAA33456.1| polymerase (DNA directed), theta-like [Bos taurus]
          Length = 2593

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 163/652 (25%), Positives = 280/652 (42%), Gaps = 133/652 (20%)

Query: 447  KEILSYLKKFF----ENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRS 501
            K+ L +L+  F    + E  + I   I+  K++L   GIS+ + +ED  +  ++LD    
Sbjct: 1945 KDRLRHLQSCFHKESDKERSVIIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSK 2004

Query: 502  SHDIASIAQKWLSYTR---KEILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
               + SI   +L +     +EI   +   S+ ++  +    +  A   S +I      L 
Sbjct: 2005 EPTLHSIVSHFLPHELPLLEEIETGQGIQSLGLNVSTTHSGRYRASVESILIFNSMNQLN 2064

Query: 558  PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
              L  E L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+
Sbjct: 2065 SLLKKENLQDVFYKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIEMQAYQLA 2124

Query: 618  GEKFNLSSPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQ 655
            G  F+ +S   + ++LF +LK P                      +G K + G+  +T++
Sbjct: 2125 GHSFSFTSSDDIAEVLFLELKLPPNGEGKNQGIKKTLGSTRRGNDNGRKLRLGKQFSTSK 2184

Query: 656  DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------AS 707
             +       +P+   ILEWR+++   +     L     +R +R++ F  +        + 
Sbjct: 2185 GVLNKLRALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSH 2239

Query: 708  TMTGRLASLEPNLQNI---------------PIKTDLGQ--------------------- 731
            T TGR+  +EPN+QN+               P    LG+                     
Sbjct: 2240 TATGRITFIEPNIQNVPRDFEIKMPAVVEESPPSQALGKGLLPMGRGGRKKDCAMNAGRQ 2299

Query: 732  ----------------KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
                             +R AF+      +++ADYSQ+ELRILAH++    L QV     
Sbjct: 2300 TKVEERASDRGMPFSVSMRHAFVPFTGGLILAADYSQLELRILAHLSHDRRLIQVLNTGA 2359

Query: 776  DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
            D+ R +AAE   +  E V   +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +
Sbjct: 2360 DVFRSIAAEWKMIEPESVGDNLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSF 2419

Query: 836  FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
              R+ GI  ++ +T    +++G+V+TI GRR +   I       +   ER AIN  +QGS
Sbjct: 2420 KSRYTGISHFMRETVKNCKRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTRVQGS 2479

Query: 896  AADITRRAMISVHKSLEDHKLATK---------------------------------MLL 922
            AADI + A +++ K LE      K                                  +L
Sbjct: 2480 AADIVKIATVNIQKQLETFHSTFKSHGHREGLLQSERTGLLPKKKLQGMFCPIRGGFFIL 2539

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            Q+HDEL++EV EE++   +QI+ + ME A    I L V L+V +++  +W E
Sbjct: 2540 QLHDELLYEVAEEDVVQVAQIVKNEMESA----IKLSVKLRVKVRIGASWGE 2587


>gi|237716863|ref|ZP_04547344.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442846|gb|EEO48637.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 435

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 168/295 (56%), Gaps = 14/295 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   N LFL+D  + IYRA+YA    P ++ K  G   +AI GF N L ++L   +KE+ 
Sbjct: 1   MDSSNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EA
Sbjct: 55  PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174
           DD+I T    A ++G    +++ DKD  QLVS    +Y    T   E + +E V  K+ I
Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K   + + +
Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
               E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV
Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRV 288


>gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I [Lactobacillus sakei]
          Length = 343

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 178/291 (61%), Gaps = 11/291 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509
           LK + E+    K    +K  ++  +R G+ + G + D++L SY+L++  +S+D+ ++A  
Sbjct: 49  LKDWLEDASHPKAVFGVKRTQVAANRLGVHLAGVDFDLLLASYLLNTTNNSNDLGTVANL 108

Query: 510 QKWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            ++ +    E +  K  K ++P +    + + +H ++ +  I  L   L  +L   +   
Sbjct: 109 HEYQNVQTDEAVYGKGAKRAVPTEP---ALLYQHLVQKAAAIYHLQPQLEEQLKEHQQFD 165

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           ++  ++ P+  V++QMEITGI++D   L+Q+ +E S+ L  LEE +Y  +GE FN++SPK
Sbjct: 166 LFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEAGETFNINSPK 225

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF K+  P   KTKTG + T    LEQ+   D PI++ IL++RQ++KI+STY + 
Sbjct: 226 QLGVILFEKMGLPVVKKTKTG-YSTAVDVLEQLRK-DAPIVQTILDYRQIAKIQSTYVEG 283

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           L   I++   +VHT Y    T TGRL+S++PNLQNIP++   G+KIR+AF+
Sbjct: 284 LLKSIHQDN-KVHTRYLQTLTQTGRLSSVDPNLQNIPVRLAEGRKIRQAFV 333


>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
 gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
          Length = 963

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 161/310 (51%), Gaps = 28/310 (9%)

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
           ++++ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AFI+ P   LI AD
Sbjct: 651 SNVSGKRGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 709

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796
           Y Q+ELRILAH+A    + + F+   D H   A  ++         G  + +  PQ    
Sbjct: 710 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIHEAVDKGEVLLEWDPQPGEE 769

Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                         RR AK +NFSI YG +P  LA   ++   EA + +  ++     + 
Sbjct: 770 KPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLARDWKVSIEEAKETVNLWYRERQEVL 829

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           ++ E  K   R++G V T+ GR   +  I+   ++ +   ERAAIN P+QGSAAD+   A
Sbjct: 830 KWQEARKKEAREDGRVHTLLGRARVFPSISHASNAQKRHIERAAINTPVQGSAADVAMCA 889

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN-LRVPL 962
           M+ + ++    +L  K+LLQIHDE++ E P E    A  I++  M K     +N L+V L
Sbjct: 890 MLQISRNKRLKELGWKLLLQIHDEVILEGPTESAVVAKDIVIECMSKPFFNGVNILKVDL 949

Query: 963 KVNIKVSNNW 972
            V+ K + NW
Sbjct: 950 SVDAKCAENW 959



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 54/249 (21%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           D  G++ L K      K FFEN    K+ HN  +DK V+  Y + + GF  D M M+ + 
Sbjct: 255 DGGGRDLLVK-----FKPFFENPEIKKVWHNYSFDKHVIQNYEVPVCGFHADTMHMARLW 309

Query: 497 DSGRSSHD------------IASIAQKWLS-----YTRKEILKSRK-----------SSI 528
           +S R +              + S AQ          + K I    K           +  
Sbjct: 310 NSSRRTEGGYSLEALTGDKRVMSGAQSCFEGLIGKVSMKTIFGKNKLKKDGSEGKMITVA 369

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLL--------------LRPKLIVEKLLHVYERLDK 574
           P++++   + +     ++   +  W L              L  K + + +L  Y+   +
Sbjct: 370 PVEELQREEREPWICYSALDAISTWQLYESLKRKLFHMPWNLNGKPVGKSMLDFYKEYWR 429

Query: 575 PMIDVVSQMEITGIQIDQDLLKQ------VSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           P  +++ +ME  GI +D+  L +      V  EI+ N        Y    +  N+ S  Q
Sbjct: 430 PFGELLVRMETEGILVDRAYLAEIEKVAKVEQEIAVNRFRNWACKYCPDAKYMNVGSDTQ 489

Query: 629 LGDILFTKL 637
           L  + F  +
Sbjct: 490 LRQLFFGGI 498


>gi|170056642|ref|XP_001864122.1| DNA polymerase theta [Culex quinquefasciatus]
 gi|167876219|gb|EDS39602.1| DNA polymerase theta [Culex quinquefasciatus]
          Length = 1177

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 214/416 (51%), Gaps = 32/416 (7%)

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL-SGEKFNLSSPKQLGDIL 633
            P+   +++ME+ G   D   L  + A +      + E +  L  G K +  S +++  +L
Sbjct: 772  PIHVALARMELVGFPADGAKLGALIARLKAAKERIAERVRQLNGGRKLDFGSTREVAAVL 831

Query: 634  FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
                K P   K + G+ +T+ Q LE+I   D+P+   ++ WR++    S   + L   I 
Sbjct: 832  ----KVP---KDRNGRARTSRQVLERI---DSPLAALVIAWRKIDSNLSRTIEPLGRGIV 881

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNI----PIKTDLGQ----KIRRAFISPPTKK- 744
               +   + Y   ST  GR++  EPNLQ +     ++ + G       R  F    + K 
Sbjct: 882  GGRRIYGSSYCFTST--GRISMHEPNLQTVVKDFRVEIEPGTVEMFSCRGTFACEDSSKV 939

Query: 745  LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKT 803
            LISAD+ Q+EL +L H+++   L  V ++  D+ R +AA+   +  E+ VS ++R + K 
Sbjct: 940  LISADFCQLELCVLTHLSQDRKLLAVMKSGKDVFRGIAAKWNHIEDEREVSDELRNYTKA 999

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            I + +IYG+    +A +L +    A   ++++   +P I  Y EK     R+ GY+ET+ 
Sbjct: 1000 IVYGVIYGMGARSMAAELNVDEDTARTLMEQFHATYPEIRRYAEKVVQVTRERGYIETLT 1059

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH--KLA---T 918
            GRR +   I+S  S+ R+  ER A+   +QGSAADI + A++ + ++L  +  +LA    
Sbjct: 1060 GRRRYLPAIHSTDSTKRSEAERQAVCTTVQGSAADILKNAILRMARNLRKYRERLALGEV 1119

Query: 919  KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +++L +HDEL+FE P ++     +I+  SME       NL +PL+V +K   +W E
Sbjct: 1120 ELVLHMHDELIFEAPRDQARKVGKILKSSMENCA----NLSLPLRVKVKSGPSWGE 1171


>gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 724

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 146/581 (25%), Positives = 262/581 (45%), Gaps = 69/581 (11%)

Query: 456 FFENEHFLKIGHNIKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           +  N     I HNIK+D K+V  ++G  +   + D  +  +VL+     H +  +  K++
Sbjct: 144 YLANGSLKCINHNIKFDDKVVTFQWGQRIANVWWDTNIAGWVLNEN-EKHGLKPMYNKYI 202

Query: 514 --SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR----------PKLI 561
                  E        IP + I    +   AI  +N   + W L +          P+  
Sbjct: 203 LNGEGSDEDFGDLFEGIPCNYIP---IDIFAIYGANDGFKTWALYQFQKKYLREDHPRAD 259

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS------------- 608
             KL HV+  ++ P+IDV   ME+ G++I +D  K++S + +  +               
Sbjct: 260 YRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKLCDEYVAKFD 319

Query: 609 --LEENIYDL----SGEKFNLSSPKQLGDILFTKLKF-------PSGAKTKTGQWKTTAQ 655
             +EEN   +      +K N +SP+Q+  + +   K        P G   K  Q      
Sbjct: 320 KFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDKIVQQHRNKA 379

Query: 656 DLEQINCGDNPI--IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                  G+  I  + N   +++   +  TY D +P     +T  VHT Y+     TGR 
Sbjct: 380 KKAGTKKGEEFIQFLDNYQRYKECGNLLGTYIDKIPEVKCAKTNAVHTTYNQYGAKTGRF 439

Query: 714 ASLEP----NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           +S +     NLQNIP      + IR+ F +    K +  D+SQIE R+L++++    + +
Sbjct: 440 SSSDTVTKINLQNIPSHE---KSIRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQE 496

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSP--------QMRRHAKTINFSIIYGISPFRLATQL 821
            +    D++ ++ ++++GV  E               +H +T   S++ GI   R A  +
Sbjct: 497 AYREGKDLYAIMGSKVYGVPYEDCREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAKAI 556

Query: 822 RIPRSEAADYIKR----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
                 +A++ ++    ++  FP I +   K +    + GYV TI GR+    E+  P  
Sbjct: 557 GEQFDRSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEYGYVTTIQGRKRRLPEMQLPDH 616

Query: 878 SIRNINE--RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
                 E  R ++NA IQGS+ADI + AMI+++   +   L   M++ +HDEL+ EVPE+
Sbjct: 617 DDYRYQEAHRQSLNAVIQGSSADIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPED 676

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            I   + ++V++M++     I+L  P+ V+ +V++ W  EN
Sbjct: 677 HIKEGADLLVNTMKRVGHSLIDL--PMSVDAEVNDYWYGEN 715


>gi|307106974|gb|EFN55218.1| hypothetical protein CHLNCDRAFT_52598 [Chlorella variabilis]
          Length = 2117

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 222/497 (44%), Gaps = 101/497 (20%)

Query: 551  QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            ++W LLR +L  ++LL    R + P+  +                      + + +  LE
Sbjct: 1641 KMWQLLRSRLRGDELLPPLWRTEMPLEPM----------------------LQRRIEELE 1678

Query: 611  ENIYDLSGEKFNLSSPKQLGDILFTKLKF---PSGAKTKTGQWKTTAQDLEQINCGDNPI 667
               +  +G++F+LSSP+++  ILF  LK    P     K+G + T  + L +++  ++PI
Sbjct: 1679 GMAHAEAGQEFSLSSPQEVSRILFEVLKLAPPPCAKDLKSGGYSTGQEVLLELH--EHPI 1736

Query: 668  IKNILEWRQLSKI--KSTYADSLPNHINKRTQRVHTFYSLASTMTG-------------- 711
             + I E R+L  +  +      LP     +  ++H  Y+ A +  G              
Sbjct: 1737 ARLIFEHRKLRTLLNRQGGPGLLPF---VQGFKMHLAYAEAVSYPGGLVLKRIRGSINQT 1793

Query: 712  -RLASLEPNLQNIP----------------------IKTDLGQKIRRAFISPPTKKLISA 748
             RLA  EPNLQ +P                         D    +R AF++PP   L+SA
Sbjct: 1794 CRLAMDEPNLQCVPKPRAYKVLLTPGELGSAASGASAHADRTANLRAAFVAPPGCVLLSA 1853

Query: 749  DYSQIELRILAHIAKITPLYQVF-ENSLDIHRMVAAEIFGVNIEK-------------VS 794
            DY QIE R++AH +    L +VF E+  D  R++AA+  G   E+             V+
Sbjct: 1854 DYRQIEFRLMAHFSGDPGLARVFSEDGADPFRLLAAQWLGAPQEQARPRGWLGRGRRGVT 1913

Query: 795  PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
             Q R HAK + + ++YG+   +LA +L    +EA    +++    PGI  +  +     R
Sbjct: 1914 QQQRDHAKQLTYGLLYGMGAAKLADELGCSVAEARTAQEKFRASMPGIEAWQARVVAECR 1973

Query: 855  QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-- 912
            + GYVET+ GRR +   IN      R   ER A N   QGSAAD+ + AM+++H  L   
Sbjct: 1974 RLGYVETLAGRRRYLPNINCRDGRKRAAAERQAKNTVCQGSAADLAKAAMVAIHTRLAAW 2033

Query: 913  ---------------DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
                               A +++LQIHDE + EV E  +   ++++   ME      + 
Sbjct: 2034 LALGSGGNCGCGGGPGGGPAARLVLQIHDEFLLEVAEPLLEPVARLVRDCME-GLASGVR 2092

Query: 958  LRVPLKVNIKVSNNWQE 974
            LRVPL+V +    +W E
Sbjct: 2093 LRVPLRVRLAAGPSWGE 2109


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 152/542 (28%), Positives = 272/542 (50%), Gaps = 70/542 (12%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVL--DSGRSSHDIASIAQKWLSYTRKEI 520
           +K+  N K+D   L    I      D ML S +L    G    ++ ++AQ +L+   +++
Sbjct: 83  VKVFQNAKFDLQFLMALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLN---EDL 139

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K  ++S    ++++SQ+  +A  ++ ++L+L  ++ P+++   L  + E ++   +  +
Sbjct: 140 DKEEQTSNWQGELTESQIL-YAARDAEILLRLRKVMIPQILENHLTQIAE-IEFRCVKAM 197

Query: 581 SQMEITGIQID----QDLLKQVSAEISKNLLSL----EENIYDLS--GEKF----NLSSP 626
           + +E  GI +D    Q+L ++  AE    L  L    E  +  +S  GE      N  S 
Sbjct: 198 AHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYVERPLMQMSLWGEDVAINQNFESQ 257

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           + + ++L      P  A  K        QDL       +P++K +L +R+ +K  S +  
Sbjct: 258 QFVLNVLHEH-GIPVAATAK--------QDLYPHR--RHPLVKTLLSYRKAAKSISAFLQ 306

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
                I+  T R+H  Y   S  +GR++   PN+Q IP  ++     R  F +PP +KLI
Sbjct: 307 PFTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNIQQIPRDSEF----RACFAAPPGRKLI 362

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            ADYSQIELR+ A I+  T +   ++   D+H + A+ +    IE++SPQ R+ AK +NF
Sbjct: 363 LADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIEEISPQERQAAKAVNF 422

Query: 807 SIIYGISPFRL---ATQ---LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            +I+G+    L   A Q   + +   +A ++ +R+F  + GIH + +  K  + + G   
Sbjct: 423 GLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKAYTGIHRWHQSIKAHLPKEG--R 480

Query: 861 TIFGRR-IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-- 917
           T+ GR+ ++Y++   P             N P+QG+AADI ++A+      L   +LA  
Sbjct: 481 TLAGRKFVYYEKAGLP----------GYYNTPVQGTAADIVKKAL-----GLLIERLAGT 525

Query: 918 -TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNIKVSNNWQ 973
            T ++  +HDE++ E P EE  T + ++  +ME+A    LPK    VP KV++ VS +W 
Sbjct: 526 DTYIVGIVHDEILLESPAEEAHTMAALLKSTMEEAANAILPK----VPTKVDVLVSESWA 581

Query: 974 EE 975
           E+
Sbjct: 582 EK 583


>gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
 gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
          Length = 643

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 143/531 (26%), Positives = 263/531 (49%), Gaps = 60/531 (11%)

Query: 488 DIMLMSYVLDS--GRSSHDI---ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           D+ +++++LDS  G + +DI    SI    +S+ R     S + S P   + D  + E +
Sbjct: 122 DLAVLAWILDSAAGSACYDIDYLKSIYGNDMSHKRPREATSLQESHPWRMLVDHDLPESS 181

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
                  L + L  R +   +  + +++ L  P+  +++ M +TG   D  ++++  +++
Sbjct: 182 D------LAVALSSRVESHGQTAVALFQEL--PVARLLTLMSVTGAPFDHSIMQRWRSDL 233

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQI 660
              +  LE     L  ++  ++SP Q+  +L+  L    P+G ++++     T  ++  +
Sbjct: 234 EVTVAKLEREAQALVKKEVLMTSPAQVAALLYDDLGLQPPAGRRSRS-----TGDEVLSM 288

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYAD---SLPNHINK-------RTQ------------- 697
               +P++  I + RQ++K+ +TY D   SLP    K       R Q             
Sbjct: 289 MVDQHPVVSIIRKHRQVAKLITTYVDTIRSLPESSPKPGLLEYFRPQNGVSESCNFLGKN 348

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIK---TDLGQ-KIRRAFISP--PTKKLISADYS 751
           R++T ++   T+TGRL+S  PNLQNIP      DLG   +R+AFISP   +  L+S DY 
Sbjct: 349 RLYTVWNQTMTVTGRLSSSNPNLQNIPRSHEFEDLGVISLRKAFISPILDSHCLVSVDYR 408

Query: 752 QIELRILAHIAKITPLYQVFE-NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           Q+E+R+LAH      L + F  +  DI+  +AA I       V+ + R  AK    +++Y
Sbjct: 409 QVEIRVLAHFVGPGALRRSFSVDGADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVY 468

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G     LA Q+ +  + A  + +++ + FP +  ++ +  +  +   YVETI  RR    
Sbjct: 469 GSGIHLLARQMGVTTTVAQGFKRQFNYAFPELERWMVRVWHAAKGKKYVETICKRR---R 525

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT---KMLLQIHDE 927
           +I      + +  +R  IN+ IQGSAADI + AM+ +  +L++ +      ++LL IHDE
Sbjct: 526 KIELDGGELTSEAKRFCINSIIQGSAADIMKSAMVQIAHALDEAQWKRGRPQLLLSIHDE 585

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKIN----LRVPLKVNIKVSNNWQE 974
            V    +E++    ++++  M    LP  +      VPL+V++K  +NW +
Sbjct: 586 FVLSCHQEDVERLGRLLLREMRNPALPGHDEDDPFSVPLEVSMKYGHNWAD 636


>gi|195952416|ref|YP_002120706.1| 5'-3' exonuclease [Hydrogenobaculum sp. Y04AAS1]
 gi|195932028|gb|ACG56728.1| 5'-3' exonuclease [Hydrogenobaculum sp. Y04AAS1]
          Length = 299

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 152/249 (61%), Gaps = 10/249 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + ++++DGS+F+YR++YA P L +  DG+   A  GF   L+ +L+  + E    +FA+ 
Sbjct: 2   DTIYVLDGSAFLYRSYYALPSL-KTEDGVETGAFYGFIRALFSILKAKKPE----YFAIA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD PA T R++IY +YKA R + P  L+ Q+PL++ A    GI  +E +G EADDIIA  
Sbjct: 57  FDLPAPTVRDKIYKEYKATRKETPSELVSQIPLIKQAINLLGIRLLEKEGLEADDIIAYI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-DTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            + +++    +TI + DKDLMQLV     +  + +  +  D E VI+K+G+PP ++    
Sbjct: 117 AHKSKEWNKNLTIYTPDKDLMQLVEDKKIIVINPITNKVFDEEAVIEKFGVPPSRLADYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS+DNI GI G+G K A  LL++YG++ENIL N   I QK  +E      E   L+
Sbjct: 177 ALIGDSVDNIKGIKGVGPKKAVELLEKYGSIENILNNWDEI-QKTFKE---ASKEDLELA 232

Query: 244 RKLVMLRTD 252
            KL+ L T+
Sbjct: 233 YKLIKLNTE 241


>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
          Length = 885

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 154/309 (49%), Gaps = 27/309 (8%)

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
           NHI+    R+H   ++ +T TGRL++  PNLQN P       KIR+AF++ P   LI AD
Sbjct: 574 NHISCDEGRIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVAD 632

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796
           Y Q+ELRILAH+A    +   F+   D H   A  ++      V  +KV     PQ    
Sbjct: 633 YGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWHPQPGQE 692

Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                         RR AK +NFSI YG +P  LA   ++   EA D +K ++     + 
Sbjct: 693 KPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDRKEVL 752

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +  K K   ++   V T+ GR   +  +    S  R   ERAAINAP+QGSAAD+   A
Sbjct: 753 AWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAADVAMCA 812

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ + ++    +L  ++LLQ+HDE++ E P E    A  I+V  M K       L V L 
Sbjct: 813 MLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELA 872

Query: 964 VNIKVSNNW 972
           V+ K + NW
Sbjct: 873 VDAKCAQNW 881



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           +++L     FFE+    K+ HN  +D  V+  YGI + GF  D M ++ + DS R
Sbjct: 191 RDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSR 245


>gi|281204189|gb|EFA78385.1| DNA-directed DNA polymerase I [Polysphondylium pallidum PN500]
          Length = 1359

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 222/450 (49%), Gaps = 66/450 (14%)

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF------NLSSPKQL 629
            ++ ++S+ME+ GI    +  +  S+    NL +  +N+      +F      +LSSP Q+
Sbjct: 906  VVPILSKMELHGITFSPETFRTCSS----NLQTYVQNLQGKWNTEFKKDSAKSLSSPVQI 961

Query: 630  GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
             + L T+ K      T +   K T  DL +    D   IK+ILE+R  +KI +TY     
Sbjct: 962  KEFLLTQYKI-----TVSNTGKQTLVDLIK-KYPDVQYIKDILEYRHCNKILTTYVQPYL 1015

Query: 690  NHI-NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------------------IKT 727
            + + +++   +H  +    T TGRL+  +PNLQN+P                     I  
Sbjct: 1016 DIVKDEQAPSIHCQWIHTGTATGRLSCKQPNLQNLPRNALNVNYNDEDGDSELADFNIDE 1075

Query: 728  D-----------LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            D           +   +R  F +     LI  DYSQIELRI+ H +K   L + F+N +D
Sbjct: 1076 DEDDNMGANNQTISLNVRDGFEAREGYTLIGLDYSQIELRIMTHYSKDQKLEEYFKNEVD 1135

Query: 777  IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            + + +A    G  ++KV+P  R   K I + I+YGI P  L+  L++ +  A+ +I  + 
Sbjct: 1136 VFKHMAHHYLGKPVDKVTPTEREQTKRIIYGIMYGIGPHSLSQILKVSKERASQFINDFL 1195

Query: 837  HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS--PKSSIRNINERAAINAPIQG 894
            ++F  I  YIE+ K  +R   +++TI GRR     +NS  P  S R +  R  +N+ IQG
Sbjct: 1196 NKFQSIRNYIEEEKKKIRLKKFIKTIAGRRRLLPHVNSQDPNQSHRAL--RQTVNSIIQG 1253

Query: 895  SAADITRRAMISVH----------KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
            SA+DI + AM ++H          KSL+ H    ++LLQIHDEL++E+P+  +      +
Sbjct: 1254 SASDIIKEAMFNIHVYLSQLSKEYKSLDPHN-DPRLLLQIHDELIYEIPDAMLNDKESEV 1312

Query: 945  VHSMEK--ACLPKINLRVPLKVNIKVSNNW 972
              ++++    + + +L VP+ V +    +W
Sbjct: 1313 CINIKRIMESVYQDDLTVPIAVTMSKGKSW 1342


>gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera]
          Length = 2091

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/441 (29%), Positives = 217/441 (49%), Gaps = 45/441 (10%)

Query: 552  LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
            LW LL    + E+L+ V  R++ P++ +++ ME+ GI +D +   Q    + K L  LE+
Sbjct: 1616 LWKLL----VSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEK 1671

Query: 612  NIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
              Y+L+G  F+L +   + ++L+  LK P      K  Q  +T +    +   ++PII  
Sbjct: 1672 EAYELAGMTFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIIPV 1731

Query: 671  ILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIP-- 724
            I E R L+K+ +    S+ +   ++ +TQR  +H  +   ST TGRL+  EPNLQ +   
Sbjct: 1732 IKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQTSTATGRLSMEEPNLQCVEHV 1791

Query: 725  --IKTDLGQKI------------RRAFISPPTKK--LISADYSQIELRILAHIAKITPLY 768
               K   G K              R F  P  +   L++ADYSQIELR++AH ++ + L 
Sbjct: 1792 VEFKMIKGNKDVCNSEADHYKINARDFFVPSQENWLLLTADYSQIELRLMAHFSRDSSLT 1851

Query: 769  QVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            ++      D+  M+AA+  G     V  Q R   K + + I+YG+    LA QL     E
Sbjct: 1852 ELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRLVYGILYGMGANTLAKQLECSLGE 1911

Query: 828  AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            A + I+ +   FPG+  ++ +      + GYV+T+ GR+    +I    S  +    R A
Sbjct: 1912 AEEKIRSFRSSFPGVASWLHEAVACCCKKGYVKTLKGRKRFLSKIKFGTSKEKLKARRQA 1971

Query: 888  INAPIQGSAADITRRAMISVHKSLEDH-----------------KLATKMLLQIHDELVF 930
            +N+  QGSAADI + AMI++H  + +                  K   +++LQ+HDELV 
Sbjct: 1972 VNSICQGSAADIIKIAMINIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVL 2031

Query: 931  EVPEEEITTASQIIVHSMEKA 951
            EV    +  A  ++  +ME +
Sbjct: 2032 EVDPSVMKEAGLLLKMTMENS 2052


>gi|167392000|ref|XP_001739984.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165896117|gb|EDR23624.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 651

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 191/363 (52%), Gaps = 19/363 (5%)

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           G+  NLSSP+Q+   L   +++  G     G  K    D + ++   +P  K +LE+R++
Sbjct: 291 GKTINLSSPEQVKKEL---IRYNIGI---DGVKKKATTDKKILSQSGHPFAKLVLEYRKI 344

Query: 678 SKIKSTYADSLPNHINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI-- 733
           SK+ S   + +     K      + T +S  +  TGR+ S  PNLQ IP +    Q+   
Sbjct: 345 SKLLSGVIEQIRRCCIKTGDEYFIRTKWSQTAITTGRIQSKNPNLQQIPKQAFSLQQFVV 404

Query: 734 --RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
             R  FI+      ++ DY+QIELRILA+  K   L + F++++DIH+++AA     N+ 
Sbjct: 405 IPRDLFITHNNNTFVAIDYNQIELRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVN 464

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            ++   RR AKTI +  IYGI PF LA QL I   E+  +++ +  +FP   ++ E+   
Sbjct: 465 DITDGERRKAKTIVYGCIYGIGPFSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIIT 524

Query: 852 FVRQNGYVETIFGRRIHYDEI--NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
                G+V TI  RR   + +  +S K ++   ++R A+N+PIQG+AADI +  MI + K
Sbjct: 525 NASTTGFVHTINNRRRRINNLTDSSDKKTLAE-SKRIAVNSPIQGTAADIIKMCMIEIFK 583

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            +    L  ++LL IHDE+V EVP+  +      + + ME      + L VPL V ++  
Sbjct: 584 KIHSTWLGVQLLLNIHDEIVLEVPDHLLDEVCVTLKYLMEHI----VQLEVPLVVTVETG 639

Query: 970 NNW 972
             W
Sbjct: 640 KKW 642


>gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group]
 gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group]
          Length = 560

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 154/309 (49%), Gaps = 27/309 (8%)

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
           NHI+    R+H   ++ +T TGRL++  PNLQN P       KIR+AF++ P   LI AD
Sbjct: 249 NHISCDEGRIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVAD 307

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796
           Y Q+ELRILAH+A    +   F+   D H   A  ++      V  +KV     PQ    
Sbjct: 308 YGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWHPQPGQE 367

Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                         RR AK +NFSI YG +P  LA   ++   EA D +K ++     + 
Sbjct: 368 KPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDRKEVL 427

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +  K K   ++   V T+ GR   +  +    S  R   ERAAINAP+QGSAAD+   A
Sbjct: 428 AWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAADVAMCA 487

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ + ++    +L  ++LLQ+HDE++ E P E    A  I+V  M K       L V L 
Sbjct: 488 MLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELA 547

Query: 964 VNIKVSNNW 972
           V+ K + NW
Sbjct: 548 VDAKCAQNW 556


>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
          Length = 1032

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 154/309 (49%), Gaps = 27/309 (8%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            NHI+    R+H   ++ +T TGRL++  PNLQN P       KIR+AF++ P   LI AD
Sbjct: 721  NHISCDEGRIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVAD 779

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796
            Y Q+ELRILAH+A    +   F+   D H   A  ++      V  +KV     PQ    
Sbjct: 780  YGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWHPQPGQE 839

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +P  LA   ++   EA D +K ++     + 
Sbjct: 840  KPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDRKEVL 899

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             +  K K   ++   V T+ GR   +  +    S  R   ERAAINAP+QGSAAD+   A
Sbjct: 900  AWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAADVAMCA 959

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ + ++    +L  ++LLQ+HDE++ E P E    A  I+V  M K       L V L 
Sbjct: 960  MLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELA 1019

Query: 964  VNIKVSNNW 972
            V+ K + NW
Sbjct: 1020 VDAKCAQNW 1028



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           +++L     FFE+    K+ HN  +D  V+  YGI + GF  D M ++ + DS R
Sbjct: 338 RDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSR 392


>gi|225430047|ref|XP_002281624.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2100

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 210/423 (49%), Gaps = 46/423 (10%)

Query: 552  LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
            LW LL    + E+L+ V  R++ P++ +++ ME+ GI +D +   Q    + K L  LE+
Sbjct: 1664 LWKLL----VSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEK 1719

Query: 612  NIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
              Y+L+G  F+L +   + ++L+  LK P      K  Q  +T +    +   ++PII  
Sbjct: 1720 EAYELAGMTFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIIPV 1779

Query: 671  ILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I E R L+K+ +    S+ +   ++ +TQR  +H  +   ST TGRL+  EPNLQ   + 
Sbjct: 1780 IKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQTSTATGRLSMEEPNLQENWL- 1838

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS-LDIHRMVAAEI 785
                              L++ADYSQIELR++AH ++ + L ++      D+  M+AA+ 
Sbjct: 1839 ------------------LLTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKW 1880

Query: 786  FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
             G     V  Q R   K + + I+YG+    LA QL     EA + I+ +   FPG+  +
Sbjct: 1881 TGKPESVVGYQEREQTKRLVYGILYGMGANTLAKQLECSLGEAEEKIRSFRSSFPGVASW 1940

Query: 846  IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
            + +      + GYV+T+ GR+    +I    S  +    R A+N+  QGSAADI + AMI
Sbjct: 1941 LHEAVACCCKKGYVKTLKGRKRFLSKIKFGTSKEKLKARRQAVNSICQGSAADIIKIAMI 2000

Query: 906  SVHKSLEDH-----------------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
            ++H  + +                  K   +++LQ+HDELV EV    +  A  ++  +M
Sbjct: 2001 NIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMTM 2060

Query: 949  EKA 951
            E +
Sbjct: 2061 ENS 2063


>gi|66817246|ref|XP_642487.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
 gi|60470570|gb|EAL68549.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
          Length = 516

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 133/484 (27%), Positives = 235/484 (48%), Gaps = 85/484 (17%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK--NLLSLEENIYDLSGEKFNL 623
           L ++  ++  ++ + + ME  GI  ++ + +    ++    N L  +  +  L G+ F+L
Sbjct: 18  LFIFSEIEMKILPIFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVL-LPGKVFSL 76

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQ-------------------WKTTAQDLEQINCGD 664
           SS + +  +LF  LK P     K  Q                   + T    LE I+   
Sbjct: 77  SSTEDISQLLFQDLKIPVPEIAKANQQYNGNKGGGGCGGGVRRQNYSTKGAVLEHIS-HH 135

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNH------INKRTQRVHTFYSLASTMTGRLASLEP 718
           +P+   I+E R+L+   + Y D L  +       N R  R+++        TGR++   P
Sbjct: 136 HPLPGLIIEIRKLTHHITHYVDILGKYEYHSDRFNMR--RIYSTIQQTVVPTGRISMAFP 193

Query: 719 NLQNI---------PIKTDLGQK------------------------------------- 732
           NLQNI         P +TDL  +                                     
Sbjct: 194 NLQNISHPIEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNLLEIESRCSFTKVS 253

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS--LDIHRMVAAEIFGVNI 790
           +R +F       L+SADYSQ+ELRIL H +K   L ++F  S  LD+ + +A ++ GV+ 
Sbjct: 254 LRNSFTCANGYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELDVFKCIAHQLSGVDY 313

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           EKVS + R  AK + + I+YG+    +A++L++ + +A   ++R+ + +  + +++E  +
Sbjct: 314 EKVSDEERNFAKHLVYGILYGMGINSIASELKVDKEKAKVQLERFKNTYRTLIDFLESIE 373

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN--ERAAINAPIQGSAADITRRAMISVH 908
           + V  + Y++T+FGR  ++  I+ PK+  ++I   +R A N+  QG+AADIT+ AMI++ 
Sbjct: 374 DRVFIDAYIKTLFGRIRNFSAIHDPKTLPKDIGKIKRGARNSVPQGTAADITKLAMINIQ 433

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
              +   +   M+LQ+HDEL+FEVP  +I  +++II  SME      + L VPL + + +
Sbjct: 434 SQFDQLSINVHMVLQLHDELLFEVPLTDIDQSAKIIKESMENV----VKLNVPLPIKMSI 489

Query: 969 SNNW 972
             NW
Sbjct: 490 GTNW 493


>gi|303267731|ref|ZP_07353545.1| DNA polymerase I [Streptococcus pneumoniae BS457]
 gi|302642736|gb|EFL73069.1| DNA polymerase I [Streptococcus pneumoniae BS457]
          Length = 255

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/262 (39%), Positives = 144/262 (54%), Gaps = 17/262 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++DGSS  +RAF+A   L ++ D      GL  NAI GF  ML  LL+        SH  
Sbjct: 1   MIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSHIL 53

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADDII 
Sbjct: 54  VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLNHMGIRHYDLAQYEADDIIG 113

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P +
Sbjct: 114 TLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTPAQ 173

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L+AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++   E
Sbjct: 174 FIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKE 233

Query: 239 TARLSRKLVMLRTDVPITIPLE 260
            A LS+ L  + T  PI I LE
Sbjct: 234 QAFLSKTLATIDTKAPIAIGLE 255


>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
 gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
          Length = 1334

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 172/640 (26%), Positives = 297/640 (46%), Gaps = 69/640 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + H  L+DG+   Y+  +AT   S  H G  V  + GF   L K++ N        +  V
Sbjct: 269 QKHTVLIDGTLMAYKV-HATGK-SLYHLGENVTILYGFIRSLLKVINNLNP---VDNIVV 323

Query: 64  IFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            FD     ++R E++P YK+ RP  P+ +L Q   +   T + GI    + GFE DD++A
Sbjct: 324 CFDPKGGSSYRKEMFPQYKSQRPSTPQDVLEQFKKLPEITDSLGIKFAVMNGFECDDLLA 383

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +Y   A   G  VTI+S DKDL+QLV     +Y+   +  +D   V  K+GI P K+V L
Sbjct: 384 SYARQACDRGDRVTIVSEDKDLLQLVRKNVSVYNVRTDTMMDESEVFNKYGIEPNKLVTL 443

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GD +DNIPGIP IG KTA  ++++YG L  I+ N   + Q K  + I    +   +
Sbjct: 444 QSLIGDKVDNIPGIPKIGPKTATEIIKQYGTLHEIIDNIEALPQ-KFIDPIKNSIDQLMV 502

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S +LV L  +V + IPL  L  +  +  + ++FL+  +F  + N++   Y     N E  
Sbjct: 503 SYQLVTLDENVDLEIPLSSLEFKPIDKTKFLNFLEKYQFNTIKNQL-RNYKLKFLNEEGQ 561

Query: 303 -VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L  NT E     IE +   D   K  + S  +++ +++  +       +E  +K    
Sbjct: 562 EELASNTREYS--KIEYDYVDDEHYKFEEMS--NEEINQLKPKNVTMVRDVETAKKAVAT 617

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            + + +     +T+ I   ++K+  IG              H + I  +I      D   
Sbjct: 618 LMQHKNKYHACDTETIAIDLKKVSPIG--------------HGRMICFSIYC--GPDVKF 661

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F   T    L V    D  G+  L +      K++FE+E  LK+ HN  +D+ + + + I
Sbjct: 662 FDGNT---RLWVDVMDDINGEAVLQE-----FKEYFEDESILKVWHNYAFDRHIFYNHNI 713

Query: 482 SMRGF-EDIMLMSYVLDSGR---SSHDIASIAQKWLSYTR---KEILKSRKSSI------ 528
           +++GF  D + M+ + ++ R     + + ++ ++ L+ T+   K++   +K         
Sbjct: 714 NVKGFGGDTLHMARLWNAARQNSGGYSLEALCRELLNKTKTPIKDLFGQKKIKANGEAGK 773

Query: 529 -----PIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVE----------KLLHVYERL 572
                P+ +I  D +     IE S++  +L   LR  L ++           +   Y   
Sbjct: 774 AITIPPLQRIQRDRRSILDWIEYSSLDSELTWSLRENLHMKLEDMVWTQNSTMWDFYYLN 833

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            +P   ++++ME  G++ID D LK + +   K+   +EEN
Sbjct: 834 WRPFGHLLTEMEQRGMKIDIDYLKNLESTAFKD---MEEN 870



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 152/303 (50%), Gaps = 26/303 (8%)

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            +  R+HT  ++ +T TGRL+S +PNLQN P       KIR+AF   P   LI ADY Q+E
Sbjct: 1033 KNSRLHTSVNV-NTETGRLSSRKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLE 1091

Query: 755  LRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVN------------------IE 791
            LR+LAHI     +   F+   D H   A  ++      V+                  ++
Sbjct: 1092 LRLLAHITNCKSMISAFKVGGDFHSRTAMGMYPHVKEAVDKGEVLLEWDGDGEPPKPLLK 1151

Query: 792  KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
             +    RR AKT+NFSI YG +   L+T   +   EA + + R++   P +  +  KT  
Sbjct: 1152 NIFASERRKAKTLNFSIAYGKTAHGLSTDWGVTLKEAQETLNRWYEDRPEVLVWQRKTIA 1211

Query: 852  FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
                + +  T+ GR  H  +I++    ++N  ERA+IN P+QG AADI  +AM+ +  + 
Sbjct: 1212 TAHSHKWTRTLMGRYRHLPDIDNSAKGMKNHAERASINTPLQGGAADIVMKAMLIIEDNK 1271

Query: 912  EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
               +L  K+++QIHDEL+ E PEE    A  ++++ M         L + L V+ + +  
Sbjct: 1272 RIKELGYKLIMQIHDELILEGPEENADEARGLVMNLMSNPLTTP--LLIDLVVDCRYAKT 1329

Query: 972  WQE 974
            W E
Sbjct: 1330 WYE 1332


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 154/567 (27%), Positives = 274/567 (48%), Gaps = 60/567 (10%)

Query: 425 ETIFIDLSVHTSQDSTGKNTL------------TKEILSYLKKFFENEHFLKIGHNIKYD 472
           E  F D    +    TGK  L            T  +   LK    +++ +K+ HN K+D
Sbjct: 5   EVFFFDTETDSLDFRTGKIKLIAFSKGLNEVVTTTSVDERLKSILNDKNIIKVFHNAKFD 64

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
                  G  +  +   +LM+ VL  G     + ++A+K+L     ++ KS + S   D 
Sbjct: 65  VGFFQSKGYRVNNYHCTLLMAQVL--GEEKLSLKALAKKYLDV---DMDKSMQHS---DN 116

Query: 533 ISDSQV-QEH---AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             ++++ QEH   A+++      L+  L   L+   LL VYER ++  +  +  +E  GI
Sbjct: 117 WQETEITQEHIDYAVKDVEHTRALYYKLLDLLVENNLLTVYER-ERRALPAIVMLESNGI 175

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGD-ILFTKLKFPSGAKTK 646
            ++ D       +  +  + LE  I DL   K  NL+SPKQL + I+   +K  S +  +
Sbjct: 176 NMEFDKWNARLDDDRRLAVELEIRIKDLLNRKELNLNSPKQLVEAIVEYGIKLHSTSDDE 235

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
             ++             ++ +IK I ++R+L     TY + L   I+    R+   + L 
Sbjct: 236 LAKY-----------SDEHEVIKLIRKYRRLQAKIKTYGEKLKKFIDN-DGRIRAHWRLI 283

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            + +GR++   P LQ +P  +      R  F++    KLI +DYSQIELR+LA I+K   
Sbjct: 284 GSRSGRMSCNNPPLQAMPGNS------REFFVADEGYKLIGSDYSQIELRVLASISKDET 337

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F N +D+H   A+ IF   I+++S + R+ AK++NF I+YGI+ + +   LR    
Sbjct: 338 LISYFNNGIDLHLGTASLIFKKPIDEISKEERQVAKSLNFGIVYGITAYGIQKNLRKSGV 397

Query: 827 EAA-DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           + + +  ++Y   F  ++  +++ ++ + +  Y++T+ GRR     +   +         
Sbjct: 398 DTSLEEAEKYRIEFLNVYPKVKELQDSLLKADYIKTLGGRRWQGGSLTMTQR-------- 449

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
             +N PIQGSAA+  + A+  +   +E  K + +++  IHDE++ EVPE+E   A  I+ 
Sbjct: 450 --LNLPIQGSAAEGLKEALALL---VERMKESWRLVAVIHDEILLEVPEDEAEEAKNILE 504

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
             M +  +  I   +P+ V+  VSNNW
Sbjct: 505 SCMVEG-MKTIVKDIPIIVDSSVSNNW 530


>gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1034

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 154/309 (49%), Gaps = 27/309 (8%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
              I+ +  R+H   ++ +T TGRL++  PNLQN P       KIR+AFI+ P   LI AD
Sbjct: 723  GEISGKNGRIHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 781

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---------PQ---- 796
            Y Q+ELRILAH+A    +   F+   D H   A  ++    E V          PQ    
Sbjct: 782  YGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREVLLEWHPQPGED 841

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   LA   ++   EA + ++R++     + 
Sbjct: 842  KPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVL 901

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             + EK K       YV T+ GR   +  ++   +S R   ERAAIN P+QGSAAD+   A
Sbjct: 902  AWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINTPVQGSAADVAMCA 961

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ + ++    +L  K+LLQ+HDE++ E P E    A  I+V  MEK    K  L V L 
Sbjct: 962  MLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLA 1021

Query: 964  VNIKVSNNW 972
            V+ K + NW
Sbjct: 1022 VDAKCAQNW 1030


>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
          Length = 1118

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 154/309 (49%), Gaps = 27/309 (8%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
              I+ +  R+H   ++ +T TGRL++  PNLQN P       KIR+AFI+ P   LI AD
Sbjct: 807  GEISGKNGRIHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 865

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---------PQ---- 796
            Y Q+ELRILAH+A    +   F+   D H   A  ++    E V          PQ    
Sbjct: 866  YGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREVLLEWHPQPGED 925

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   LA   ++   EA + ++R++     + 
Sbjct: 926  KPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVL 985

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             + EK K       YV T+ GR   +  ++   +S R   ERAAIN P+QGSAAD+   A
Sbjct: 986  AWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINTPVQGSAADVAMCA 1045

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ + ++    +L  K+LLQ+HDE++ E P E    A  I+V  MEK    K  L V L 
Sbjct: 1046 MLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLA 1105

Query: 964  VNIKVSNNW 972
            V+ K + NW
Sbjct: 1106 VDAKCAQNW 1114


>gi|326426432|gb|EGD72002.1| hypothetical protein PTSG_00018 [Salpingoeca sp. ATCC 50818]
          Length = 830

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 219/440 (49%), Gaps = 48/440 (10%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y RL+ P I ++++M++ GI ID + LKQ   +I + L  LE     L G K  L+SP 
Sbjct: 400 LYSRLEAPAIWLLAEMQVHGIHIDTETLKQQRVQIQQCLAELEARAEALVGFKLLLTSPL 459

Query: 628 QLGDILFTKLKF----PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW-RQLSKIKS 682
           QL + L+ +L+     P+  +T  G+  T    L  I   D   + N+L   R+ +++  
Sbjct: 460 QLREYLYDQLQLHVGIPNFPRTPKGKLSTGEDALTLIK--DRHELPNLLLLHRRAARLLC 517

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD------LGQKIRRA 736
           TY D +  H+      +H  +   S  +GR++  +PN+Q++P++        L    R A
Sbjct: 518 TYIDGVLPHVTHGM--LHPEWLQTSAASGRVSCQQPNIQSVPLRETALRLDLLVVSPRAA 575

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN----------------------- 773
           +++P     +S D+ Q+ELR+LAH ++   L  +F+N                       
Sbjct: 576 YVAPGGCVYVSLDWRQMELRLLAHFSEDEGLIALFQNQEAKAKANTPPSTANATSREEGG 635

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + D  + +A++ F V +E+V+ + R   K   ++ IYG     L+  L +   EA   ++
Sbjct: 636 TSDPFKALASKWFCVPVEQVTGRQRDQVKRCLYAFIYGSGALHLSKVLEVSVHEAKKLLQ 695

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            +  R P I    ++    +++ G+V  +  RR ++      K S  + ++RAA N  +Q
Sbjct: 696 AFRRRHPRIQHLRDQVLIRLKETGFVSCLSRRRRYF------KDSANDHSQRAAFNFLLQ 749

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA-C 952
           GSAADI + AMI++ + L   ++ + M+ Q+HDE++ E PE+E   A +++  +   A C
Sbjct: 750 GSAADICKAAMINLREFLRAKQMRSFMVAQLHDEIILECPEKE---AKEVLAFTRGPAFC 806

Query: 953 LPKINLRVPLKVNIKVSNNW 972
            P   +RVP  V  ++   W
Sbjct: 807 EPFGRMRVPFPVRQRIGRTW 826


>gi|220936133|ref|YP_002515032.1| 5'-3' exonuclease [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997443|gb|ACL74045.1| 5'-3' exonuclease [Thioalkalivibrio sp. HL-EbGR7]
          Length = 332

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 145/260 (55%), Gaps = 15/260 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           + + L+LVD S +++RA++  P      +G P NA+ GF   L +LL        A+   
Sbjct: 6   RASPLWLVDSSIYVFRAWFTLPEAITDREGHPANAVTGFGEFLVRLLTR------AAPAP 59

Query: 63  VIFDYP---AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           V+F +      ++R+EIYP+YKANRP  PE L  Q    R    A G PA     +EADD
Sbjct: 60  VVFAFDESLGQSYRHEIYPEYKANRPPAPESLKRQFRQCRALVTALGFPAFSSPRYEADD 119

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           II T T   +  G +V +I+ DKDL QLV P    ++  ++ ++D   V KK G+ PE++
Sbjct: 120 IIGTLTARQQAAGGSVHLITADKDLTQLVGPGDLWWEFQQDRRLDARGVEKKLGVRPEQV 179

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-----IKQKKRRENIL 234
               AL GD +DNIPG+PGIG  TAA +L+ +G+L+ +  +        I+  +R  +++
Sbjct: 180 ADQLALAGDKVDNIPGVPGIGMATAARILRRFGDLDTLFADTDEVAKLHIRGARRLADLV 239

Query: 235 -EYAETARLSRKLVMLRTDV 253
            E+  + RLSR+L  +  D+
Sbjct: 240 REHEHSVRLSRRLTGIHCDI 259


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 153/537 (28%), Positives = 258/537 (48%), Gaps = 60/537 (11%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           +GHN+K+D   L+RY I      D M+ S +L +    H + S+A  +L      + KS 
Sbjct: 73  VGHNLKFDLKYLYRYHIEPYAVFDTMVASQLL-AELDRHSLQSVAMHYLGQV---LDKSL 128

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL----IVEKLL------HVYERLDK 574
           + S    ++      E+A  +  V+  L+ +L  KL    + E++L       V+  L  
Sbjct: 129 QLSDWGSRVLTKAQLEYAALDVVVVRDLFPILLEKLNQCPVREEILLKTRTSRVFG-LQN 187

Query: 575 PM-------IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSP 626
           P+       +  V+++E+ G+ +D   L+ V  E S+ +   +  I D +S  + +  SP
Sbjct: 188 PVAIVEMAFVQEVAKLELNGLPVDTQELESVFREYSRKV---QRMIMDFISTHRVDPMSP 244

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG+ L  +L      KT+ G   T  + L +     +P++++ILE R   KI     D
Sbjct: 245 KQLGEFLTRRLGLDL-PKTEKGNVSTDDKALSE--HAHHPVVRHILEIRASKKI----LD 297

Query: 687 SLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
            L     N R  RV+  +     +TGR+AS  PN+QNIP      + +RR F +      
Sbjct: 298 KLEEIRENLRGNRVYPEFKQIGAVTGRMASSNPNVQNIP------KDLRRIFKAEEGNLF 351

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           + AD+SQIELRI A       + + F+   D+HR  A+ + G   E ++ + R+ AK +N
Sbjct: 352 VIADFSQIELRIAAEYVGEIRMIRAFQEGRDLHRYTASILLGKREEDITKEERQLAKAVN 411

Query: 806 FSIIYGISPFRLAT-----QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV- 859
           F +IYGIS   L+       + +P  EA    +R+F  F G  ++  + K  +++ G   
Sbjct: 412 FGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFFSYFEGFRDWHNRVKEELKKTGKSS 471

Query: 860 -ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
             T+ GR   Y     P           A+N PIQG+ AD+ + A++ +   L    +  
Sbjct: 472 GHTLLGR--SYVAHTFPD----------AVNYPIQGTGADLLKLAVLMLDAELRKEGIPA 519

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           K++  +HDE+V E P+E       ++  +M++A    I  RVP++V + V   W++E
Sbjct: 520 KVVNLVHDEIVLECPQEVAQEVQTLLERAMKRAG-SIILKRVPVEVEVTVKERWEKE 575


>gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 642

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 156/582 (26%), Positives = 256/582 (43%), Gaps = 71/582 (12%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG 499
           G N        +L     N H  K+ HNI ++  + +  GI ++    D +  + +  + 
Sbjct: 74  GANIDRTAFFLFLADLLANPHITKVAHNIAFESSMAYARGIVIQPPVYDTIAAAQM--TS 131

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIP----------IDKI--SDSQVQEHAIENSN 547
           RS+++   + +  L +   E+L+    S+P           D++   D +   +   +++
Sbjct: 132 RSAYEFRRLNESGLKHLAGELLEE---SLPTFAETTGGKHFDELPAQDKETVRYGAADAD 188

Query: 548 VILQL------WL---LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             L+L      W    L R + IVE        ++ P    +  M+  G+ IDQ L+++ 
Sbjct: 189 FSLRLYHTFNGWFDRYLPRHRWIVE-------HMESPTAIYLGVMKNNGVPIDQSLMQKR 241

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI---LFTKLKFPSGAKTKTGQWKTTAQ 655
            AE    +  + + I  L G+  N+ +     D    LF     P    T   Q      
Sbjct: 242 KAESEMEMERIRQEITFLIGD-VNIGANCSTADFKKYLFESQGLPVLKVTNKSQ--AALD 298

Query: 656 DLEQINCGDN---------PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           D+  +  G+          P+ K + E+R+  KI+STY D     +N  T+R+H      
Sbjct: 299 DMAMVLLGEWCEEHKPELVPLFKLVQEYRRWGKIQSTYIDGYLKFLNPVTKRLHPDIFAL 358

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKIT 765
           ST TGR+   +PN QN+P K++    +R  FI  P+  LI S D+SQIELR+ A   +  
Sbjct: 359 STDTGRMNCRKPNCQNMPRKSNDPIGVRN-FIKAPSGHLILSLDFSQIELRVGAFYCRDE 417

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH-------AKTINFSIIYGISP---- 814
            + + +    DIH      IFGV  E+   + R         AK +NF   YG+ P    
Sbjct: 418 RMMETYRAGGDIHAATTCVIFGVTDEEAQDKHRADYKERRTIAKNVNFGTFYGLFPRGLQ 477

Query: 815 ----FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
               F+   +  +P  E+   I      +  +  + E+TK    +  Y ET  GRR +  
Sbjct: 478 NTLKFKAGVEKTLPECESV--IANLKAGYRELSTWQEETKVQAARRLYSETWLGRRRYLP 535

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +I S + + ++  ER A+N PIQG+AADI + A++ + K L D     K +LQIHDEL F
Sbjct: 536 DIRSKEWARKSFAERCALNTPIQGTAADILKLAIVRILKGLPDRPW-LKPILQIHDELTF 594

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +P   +  A   I   ME+   P+ +L  PL        N+
Sbjct: 595 IIPAGRLDEAVAFIRACMEEQPFPEFDL--PLIAKASAGENF 634


>gi|157111398|ref|XP_001651546.1| DNA polymerase theta [Aedes aegypti]
 gi|108878374|gb|EAT42599.1| DNA polymerase theta [Aedes aegypti]
          Length = 1987

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 218/428 (50%), Gaps = 32/428 (7%)

Query: 563  EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL-SGEKF 621
            +++L  + + + P+   +++ME+ G   D + L  +   +      + E +  L  G + 
Sbjct: 1570 QEMLPTFVQREMPIHGALARMELVGFPADANKLAHLIERLKVAQERISERVRTLNGGRRL 1629

Query: 622  NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
            N +S  ++       LK P   + + G+ KT  Q LE+I   D+P+   ++ +R++    
Sbjct: 1630 NFASTSEVA----AALKVP---RERNGRVKTCRQVLEKI---DSPLATLVIAYRKIESNL 1679

Query: 682  STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI----PIKTDLGQ----KI 733
            S   + L   I +  +R++   S   T TGR++  EPNLQ +     ++ D G       
Sbjct: 1680 SRTIEPLYRAI-RDGKRIYG-NSYCFTSTGRISMHEPNLQTVVKDFKVEIDPGHVEVFSC 1737

Query: 734  RRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
            R  F  S P + L+SAD+ Q+EL +L H+++   L  V     D+ R +AA+   +  E 
Sbjct: 1738 RSTFACSSPDRILLSADFCQLELCVLTHLSQDRKLLAVMNGGKDVFRGIAAKWNRIEDEA 1797

Query: 793  -VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
             VS ++R + K I + +IYG+    +A +L +    A   ++++   +P I  Y +K   
Sbjct: 1798 LVSDELRNYTKAIVYGVIYGMGAKSMAAELNVDEDMACTLMEQFHSTYPEIRRYADKVIQ 1857

Query: 852  FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
              R+ GY+ET+ GRR +   I+S     R+  ER A+   +QGSAADI + A++ + ++L
Sbjct: 1858 VTRERGYIETLTGRRRYLPAIHSTDMKKRSEAERQAVCTTVQGSAADILKNAILRMMRNL 1917

Query: 912  EDHKLATK-----MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
              ++   +     ++L +HDEL+FEVP ++    ++I+  SME        L +PL+V +
Sbjct: 1918 RKYRQTLRLGQVELVLHMHDELIFEVPRDQSRKVAKILKSSMENCA----KLSLPLRVKV 1973

Query: 967  KVSNNWQE 974
            K+  +W E
Sbjct: 1974 KMGASWGE 1981


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 150/542 (27%), Positives = 270/542 (49%), Gaps = 70/542 (12%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVL--DSGRSSHDIASIAQKWLSYTRKEI 520
           +KI  N K+D   L    I      D ML S +L    G    ++ ++AQ +L+   +++
Sbjct: 78  IKIFQNAKFDLQFLMALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLN---EDL 134

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K  ++S    ++++SQ+  +A  ++ ++L+L  ++ P+++   L  +   ++   +  +
Sbjct: 135 DKEEQTSNWQGELTESQIL-YAARDAEILLRLRKVMIPQILENHLTQI-AGIEFRCVKAM 192

Query: 581 SQMEITGIQID----QDLLKQVSAEISKNLLSL----EENIYDLS--GEKF----NLSSP 626
           + +E  GI +D    Q+L ++  AE    L  L    E  +  +S  GE      N  S 
Sbjct: 193 AHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYVERPLMQMSLWGEDVAINQNFESQ 252

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           + + ++L      P  A  K        QDL       +P++K +L +R+ +K  S +  
Sbjct: 253 QFVLNVLHEH-GIPVAATAK--------QDLYPYR--RHPLVKTLLSYRKAAKSISAFLQ 301

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
                I+  T R+H  Y   S  +GR++   PN+Q IP  ++     R  F +PP +KLI
Sbjct: 302 PFTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNIQQIPRDSEF----RACFAAPPGRKLI 357

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            ADYSQIELR+ A I+  T +   ++   D+H + A+ +    I +++PQ R+ AK +NF
Sbjct: 358 LADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIAEITPQERQAAKAVNF 417

Query: 807 SIIYGISPFRL---ATQ---LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            +I+G+    L   A Q   + +   +A ++ +R+F  + GIH + +  K  + + G   
Sbjct: 418 GLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKAYTGIHRWHQSIKAHLPKEG--R 475

Query: 861 TIFGRR-IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-- 917
           T+ GR+ ++Y++   P             N P+QG+AADI ++A+      L   +LA  
Sbjct: 476 TLAGRKFVYYEKAGLP----------GYYNTPVQGTAADIVKKAL-----GLLIERLAGT 520

Query: 918 -TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNIKVSNNWQ 973
            T ++  +HDE++ E P EE  T + ++  +ME+A    LPK    VP KV++ VS +W 
Sbjct: 521 DTYIVGIVHDEILLESPAEEAHTMAALLKSTMEEAANAILPK----VPTKVDVLVSESWA 576

Query: 974 EE 975
           E+
Sbjct: 577 EK 578


>gi|60117328|gb|AAX14432.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 276

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/294 (38%), Positives = 167/294 (56%), Gaps = 26/294 (8%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           +D+M+MSY LD+G+  H I +I    LS    EI  S K+ I I +              
Sbjct: 3   DDLMIMSYSLDTGKHDHSIPNIVAHNLS-ENAEIF-SAKTLIAIHE-------------- 46

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
                    L+ +L  EKL  +YER DKP++ V+  ME  GI ++   L+++S +  + +
Sbjct: 47  --------KLKQRLFQEKLFTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVI 98

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD-LEQINCGDN 665
             LE+ IY+L+GE+FN++SPKQL D+LF K+      K+K     +T  + LE +     
Sbjct: 99  AVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGV 158

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            I   IL WR LSK+K TY D+L   ++    R+HT +S  +T TGRL+S  PNLQNIPI
Sbjct: 159 EIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQNIPI 218

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILA-HIAKITPLYQVFENSLDIH 778
           +++ G  IR+AFI+P   K+ISADYSQIEL+ L     +   L ++F    +IH
Sbjct: 219 RSEEGNLIRQAFIAPKGHKIISADYSQIELKPLGTRCQRCHHLKKLFATKQEIH 272


>gi|145629928|ref|ZP_01785710.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144984209|gb|EDJ91632.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 255

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 102/248 (41%), Positives = 142/248 (57%), Gaps = 11/248 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ +      KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241

Query: 239 TARLSRKL 246
            A LS  L
Sbjct: 242 NADLSYTL 249


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/542 (25%), Positives = 274/542 (50%), Gaps = 43/542 (7%)

Query: 443  NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
            N     IL  L+K   +E+ +KI  N K+D   L     ++    D  + S +LD  ++ 
Sbjct: 1294 NITNNNILDGLRKILNDENIVKIIQNGKFDTKFLLYNNFNITNIFDTYIASKLLDKNKNM 1353

Query: 503  HD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +   + +I +K+LS     + K +++S+  + + ++    +A  +S+ +L+L+  L  ++
Sbjct: 1354 YGFKLNNIVEKYLSVY---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQI 1410

Query: 561  IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY--DLSG 618
              E +  +   ++   I  +  ME+ GI++D + L + + +I  N L++E +    +L  
Sbjct: 1411 KAENM-QIVNDIENKCILPICDMELNGIKVDLENLNKSTDQIL-NELNVERDKLKKELKN 1468

Query: 619  EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
            E  N++S +Q+      K    +  +  + +      D    N  ++  +  +  +R+L 
Sbjct: 1469 EDINVNSQQQI-----LKALQDNNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLY 1523

Query: 679  KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
            K+ S +   LP HINK+T ++HT ++   T +GR +S +PNLQ IP +    + IR  FI
Sbjct: 1524 KLYSAFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREIFI 1579

Query: 739  SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
                   I AD+ QIEL+I A I     + + + N++D+H + A+ I    I +++ + R
Sbjct: 1580 PTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINKEDR 1639

Query: 799  RHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
              AK INF ++YG++   L T       +++   +   +   +F  + G+  +     N 
Sbjct: 1640 HVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGLSRW----HNI 1695

Query: 853  VRQNGYVE--TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
            V+Q   +E  T+  R++ +   +  K          A+N P+QG+ ADI + A++ ++K+
Sbjct: 1696 VKQTKALEYSTLSNRKVVFPYFSFTK----------ALNYPVQGTCADILKLALVELYKN 1745

Query: 911  LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
            L    +  K++L +HDE++ EV ++    A +I+V SME +    +  +V  +V+IK++ 
Sbjct: 1746 L--RHINGKIILCVHDEIIIEVDKKHQEEALRILVESMENSASFFLK-KVKCEVSIKIAQ 1802

Query: 971  NW 972
            NW
Sbjct: 1803 NW 1804


>gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1088

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 158/309 (51%), Gaps = 29/309 (9%)

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
           ++++ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AFI+ P   LI AD
Sbjct: 690 SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 748

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796
           Y Q+ELRILAH+A    + + F    D H   A  ++         G  + +  PQ    
Sbjct: 749 YGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 808

Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                         RR AK +NFSI YG +   L+   ++ R EA D +  +++    + 
Sbjct: 809 KPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVR 868

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           ++ E  K    Q GYV T+ GR   + E  S   + +N  ERAAIN P+QGSAAD+   A
Sbjct: 869 KWQELRKKEAIQKGYVLTLLGRARKFPEYRS--RAQKNHIERAAINTPVQGSAADVAMCA 926

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ +  +    +L  K+LLQ+HDE++ E P E    A  I+V+ M +    K  L V L 
Sbjct: 927 MLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLS 986

Query: 964 VNIKVSNNW 972
           V+ K + NW
Sbjct: 987 VDAKCAQNW 995



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 47/206 (22%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           D  G+N   ++IL+  K FFE+    K+ HN  +D  ++  YGI + GF  D M M+ + 
Sbjct: 279 DVLGENG--RDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLW 336

Query: 497 DSGR---SSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDKI-SDSQVQEHAIENSNVIL 550
           DS R     + + ++    K L  T  +        I + KI    ++++   E   VI+
Sbjct: 337 DSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVII 396

Query: 551 -----------QLWL--------------------------LLRPKLIVEK-LLHVYERL 572
                      + W+                           L  KLI +K +   Y+  
Sbjct: 397 PPVKELQMEDREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEY 456

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQV 598
            +P  +++++ME  G+ +D+D L Q+
Sbjct: 457 WQPFGELLAKMESEGMLVDRDYLAQI 482


>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 155/307 (50%), Gaps = 27/307 (8%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
            ++    R+H   ++ +T TGRL++  PNLQN P       KIR+AF++     LI ADY 
Sbjct: 843  VSGENGRIHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFVAAQGNSLIVADYG 901

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ------ 796
            Q+ELRILAH+A    +   F+   D H   A  ++         G  + +  PQ      
Sbjct: 902  QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGRVLLEWHPQPGEEKP 961

Query: 797  -----------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
                        RR AK +NFSI YG +   LA   ++   EA + + R++     + ++
Sbjct: 962  PVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYRDRKEVSDW 1021

Query: 846  IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             E+ K   R+   V T+ GR   +  + +   S++   ERAAIN P+QGSAAD+   AM+
Sbjct: 1022 QEQRKFEAREFRRVHTLLGRARWFPSVKNATGSVKGHIERAAINTPVQGSAADVAMCAML 1081

Query: 906  SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
             + K+    +L  K+LLQ+HDE++ E PEE    A  I+V  M K    K  LRV L V+
Sbjct: 1082 EISKNARLEELGWKLLLQVHDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDLSVD 1141

Query: 966  IKVSNNW 972
             K + NW
Sbjct: 1142 SKCAKNW 1148



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
           H + I  +I +  + D    K   I++D+      D  GKN L +        FF++   
Sbjct: 406 HGEIICFSIYSGPEADFGDGK-SCIWVDV-----LDGDGKNLLVE-----FAPFFQDPSI 454

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
            K+ HN  +D  V+  YG  + GF  D M M+ + DS R
Sbjct: 455 RKVWHNYSFDNHVIENYGFKVSGFHADTMHMARLWDSSR 493


>gi|51893817|ref|YP_076508.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51857506|dbj|BAD41664.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 283

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 99/254 (38%), Positives = 144/254 (56%), Gaps = 11/254 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDG   ++R F+A P ++    G PVNA+ GF +ML +LL   R     SH AV  D
Sbjct: 1   MLLVDGG-LMFRTFFALPPMTDPK-GRPVNAVYGFVSMLLRLLATLR----PSHVAVAAD 54

Query: 67  YPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P    R  + YP YKANRP+ P  L PQ  L+R    A  I  + ++G+EADD++ T  
Sbjct: 55  SPVAENRRAVLYPPYKANRPECPPDLAPQFALLREVLAALNITVVGVRGYEADDLMGTMA 114

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEKMVCL 182
            +AE EG  V +++ D+D  QL+S  T +    +  +    D+   + +WGI P ++  L
Sbjct: 115 RMAEAEGMEVILLTGDRDAFQLLSGRTAVQYVKRLNQTITYDVARFVTEWGILPSQLADL 174

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DNIPGI GIG KTA  LLQ+Y  LE +L +A   +  K R+ + E  E A L
Sbjct: 175 KGLAGDASDNIPGIRGIGPKTAVRLLQQYVTLEAVLAHA-HAQPGKLRQRLEEGREIALL 233

Query: 243 SRKLVMLRTDVPIT 256
           S++L  +   VP++
Sbjct: 234 SKRLATIDRHVPVS 247


>gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding /
            DNA-directed DNA polymerase/ nucleic acid binding
            [Arabidopsis thaliana]
 gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana]
 gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana]
 gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana]
 gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1034

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 158/309 (51%), Gaps = 29/309 (9%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            ++++ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AFI+ P   LI AD
Sbjct: 725  SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 783

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796
            Y Q+ELRILAH+A    + + F    D H   A  ++         G  + +  PQ    
Sbjct: 784  YGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 843

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+   ++ R EA D +  +++    + 
Sbjct: 844  KPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVR 903

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            ++ E  K    Q GYV T+ GR   + E  S   + +N  ERAAIN P+QGSAAD+   A
Sbjct: 904  KWQELRKKEAIQKGYVLTLLGRARKFPEYRS--RAQKNHIERAAINTPVQGSAADVAMCA 961

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ +  +    +L  K+LLQ+HDE++ E P E    A  I+V+ M +    K  L V L 
Sbjct: 962  MLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLS 1021

Query: 964  VNIKVSNNW 972
            V+ K + NW
Sbjct: 1022 VDAKCAQNW 1030



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 47/206 (22%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           D  G+N   ++IL+  K FFE+    K+ HN  +D  ++  YGI + GF  D M M+ + 
Sbjct: 314 DVLGENG--RDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLW 371

Query: 497 DSGR---SSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDKI-SDSQVQEHAIENSNVIL 550
           DS R     + + ++    K L  T  +        I + KI    ++++   E   VI+
Sbjct: 372 DSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVII 431

Query: 551 -----------QLWL--------------------------LLRPKLIVEK-LLHVYERL 572
                      + W+                           L  KLI +K +   Y+  
Sbjct: 432 PPVKELQMEDREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEY 491

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQV 598
            +P  +++++ME  G+ +D+D L Q+
Sbjct: 492 WQPFGELLAKMESEGMLVDRDYLAQI 517


>gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1049

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 158/309 (51%), Gaps = 29/309 (9%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            ++++ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AFI+ P   LI AD
Sbjct: 740  SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 798

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796
            Y Q+ELRILAH+A    + + F    D H   A  ++         G  + +  PQ    
Sbjct: 799  YGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 858

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+   ++ R EA D +  +++    + 
Sbjct: 859  KPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVR 918

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            ++ E  K    Q GYV T+ GR   + E  S   + +N  ERAAIN P+QGSAAD+   A
Sbjct: 919  KWQELRKKEAIQKGYVLTLLGRARKFPEYRS--RAQKNHIERAAINTPVQGSAADVAMCA 976

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ +  +    +L  K+LLQ+HDE++ E P E    A  I+V+ M +    K  L V L 
Sbjct: 977  MLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLS 1036

Query: 964  VNIKVSNNW 972
            V+ K + NW
Sbjct: 1037 VDAKCAQNW 1045



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 47/206 (22%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           D  G+N   ++IL+  K FFE+    K+ HN  +D  ++  YGI + GF  D M M+ + 
Sbjct: 329 DVLGENG--RDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLW 386

Query: 497 DSGR---SSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDKI-SDSQVQEHAIENSNVIL 550
           DS R     + + ++    K L  T  +        I + KI    ++++   E   VI+
Sbjct: 387 DSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVII 446

Query: 551 -----------QLWL--------------------------LLRPKLIVEK-LLHVYERL 572
                      + W+                           L  KLI +K +   Y+  
Sbjct: 447 PPVKELQMEDREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEY 506

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQV 598
            +P  +++++ME  G+ +D+D L Q+
Sbjct: 507 WQPFGELLAKMESEGMLVDRDYLAQI 532


>gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus]
          Length = 822

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 136/476 (28%), Positives = 233/476 (48%), Gaps = 75/476 (15%)

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K S    + S + + ++   N  ++  L + L  KL    L  ++  L+ P+I +++ ME
Sbjct: 381 KPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVME 440

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
              I +D++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF KLK    ++
Sbjct: 441 NHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQ 500

Query: 645 TK----TG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            K    TG   Q  T+   L  +    +P+ K ILE+RQ+ KIKST+ D L  ++ K + 
Sbjct: 501 RKHLPRTGLQNQLSTSEAMLNSLQ-DLHPLPKLILEYRQVHKIKSTFIDGLLAYMKKGS- 558

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPT 742
            + + ++   T+TGRL++  PN+Q I   PIK                   R  F+S   
Sbjct: 559 -ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEG 617

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800
              ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   + IE+V+   R  
Sbjct: 618 HTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQ 677

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K + +S++YG                                             GYV 
Sbjct: 678 TKKVVYSVVYGA--------------------------------------------GYVT 693

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATK 919
           +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++     L  +
Sbjct: 694 SILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTAR 753

Query: 920 MLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++ QIHDEL+FEV + ++   + +   I+ S+++    ++ L+VPLKVN+ V  +W
Sbjct: 754 LVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 809


>gi|307177771|gb|EFN66768.1| ATP-dependent DNA helicase HEL308 [Camponotus floridanus]
          Length = 1821

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 34/299 (11%)

Query: 704  SLASTMTGRLASLEPNLQNIPIKTDLGQK-----IRRAFISPPTKKLISADYSQIELRIL 758
            S+  T+TGR++  EPNLQN+P             +R AF+      ++SADY Q+ELR+L
Sbjct: 1519 SITCTVTGRVSMHEPNLQNVPKDFSFADNNFVLSVRMAFVPALGNIMLSADYCQLELRLL 1578

Query: 759  AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
             H ++ + L ++     DI + +AA+   V+ E+V+ +MR+  K + + +IYG+    LA
Sbjct: 1579 THFSQDSILCEIMRQPGDIFKSIAAKWNNVSEEEVTIEMRQRTKQLCYGMIYGMGVKSLA 1638

Query: 819  TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
              L I  SEA ++++ +   +PGI++++        ++ Y+ T+ GRR  + ++ S KSS
Sbjct: 1639 ENLCISESEAQEFLESFMSTYPGIYKWLNNVLEEAHRDVYITTLLGRRRQFPDLKSTKSS 1698

Query: 879  IRNINERAAINAPIQGSAADITRRAMISVHK-------------------------SLED 913
             R   ER A+N  +QGSAADI ++AMIS+ +                         S + 
Sbjct: 1699 TRAQAERQAVNTKVQGSAADIVKKAMISIEERIRCNFPDSAIIFPEMNNTRKLRSNSRDM 1758

Query: 914  HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +    ++LQ+HDEL++EV   ++   + II  SME  C     L VPL V I+V   W
Sbjct: 1759 QQRGGYLVLQLHDELLYEVNLADLKEVAAIIRESMENVC----QLTVPLPVKIRVGPAW 1813


>gi|308805154|ref|XP_003079889.1| DNA polymerase type I (ISS) [Ostreococcus tauri]
 gi|116058346|emb|CAL53535.1| DNA polymerase type I (ISS) [Ostreococcus tauri]
          Length = 322

 Score =  171 bits (432), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 110/284 (38%), Positives = 151/284 (53%), Gaps = 30/284 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN--SRKESIAS 59
           ++  HL LVDG SF++RA+Y     +R +     NA     ++L+       S  E   +
Sbjct: 12  ERTEHLILVDGLSFVFRAYYGWN--ARGNGEGLTNASGEDTSVLYSYAHTICSLLEMRPT 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV  D    TFR+E++ DYKANRP  PE LL  +P V    +  G+P + + G EADD
Sbjct: 70  HLAVCMDAKGKTFRHEMFVDYKANRPPTPEPLLEVIPKVEQLVRDMGVPVLRLSGVEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------------E 166
           II T +  A   GF V+I S DKD  QL+ P T +    K  K D               
Sbjct: 130 IIGTVSRRASDAGFRVSICSPDKDFYQLLGPRTSMLKPNKSNKGDPFVPFTEEDFRAMHN 189

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
           HVI+     P + +   AL GDS DNIPG+ G+G KTA  LL EYG ++  L NAS++K 
Sbjct: 190 HVIE-----PAQFIDYLALVGDSSDNIPGVEGVGPKTALALLGEYGTIDAALANASKVKG 244

Query: 227 KKRRENILEY--AETARLSRKLVMLRTDVPIT------IPLEHL 262
           K+ RE++L    A +A LSRKLV +R ++ +       +PLE L
Sbjct: 245 KRARESLLSEKGAASAALSRKLVEIRQNLTVPSLNEPLLPLESL 288


>gi|254445605|ref|ZP_05059081.1| 5'-3' exonuclease, N-terminal resolvase-like domain family
           [Verrucomicrobiae bacterium DG1235]
 gi|198259913|gb|EDY84221.1| 5'-3' exonuclease, N-terminal resolvase-like domain family
           [Verrucomicrobiae bacterium DG1235]
          Length = 300

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/249 (38%), Positives = 142/249 (57%), Gaps = 14/249 (5%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG +  +RAFYA   L R+ DG P NA+ G+   +WKL Q+ +K   A +  V FD 
Sbjct: 9   LLIDGFNMAFRAFYAVKEL-RRSDGFPTNALYGWVRSMWKL-QDDQK---ADYVTVFFDL 63

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT-- 125
                +  + P+YKANR + PE    Q+P+++  T+A G   IE+ G E+DD++A Y   
Sbjct: 64  GGAQEKLALLPEYKANRGETPEDFEKQIPIIKQLTKAMGFGHIELDGVESDDLLAAYATR 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
            +A++E   V I+S DKD  Q V+       P       +   ++D   V +KWG+PPEK
Sbjct: 124 LVAKEEDAIVKIVSADKDFAQSVTDRIHLLLPPPTANPRLGWRELDPAGVEEKWGLPPEK 183

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           MV   +L GD+ DNIPG+PG G KTA   L EYG++  +L NA+ IK  + RE +    E
Sbjct: 184 MVDYLSLIGDTSDNIPGVPGCGPKTAVKWLTEYGDINGVLANAADIKPPRFRELLPTLEE 243

Query: 239 TARLSRKLV 247
              ++RK++
Sbjct: 244 RMDINRKII 252


>gi|309805210|ref|ZP_07699262.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308165444|gb|EFO67675.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           09V1-c]
          Length = 446

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 4   LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 57  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           + T   +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 137/542 (25%), Positives = 274/542 (50%), Gaps = 43/542 (7%)

Query: 443  NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
            N     IL  L+K   +E+ +KI  N K+D   L     ++    D  + S +LD  ++ 
Sbjct: 1299 NITNNNILDGLRKILNDENIVKIIQNGKFDTKFLLYNNFNITNIFDTYIASKLLDKNKNM 1358

Query: 503  HD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +   + +I +K+LS     + K +++S+  + + ++    +A  +S+ +L+L+  L  ++
Sbjct: 1359 YGFKLNNIVEKYLSVY---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQI 1415

Query: 561  IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY--DLSG 618
              E +  +   ++   I  +  ME+ GI++D + L + + +I  N L++E +    +L  
Sbjct: 1416 TAENM-QIVNDIENKCILPICDMELNGIKVDLESLNKSTDQIL-NELNVERDKLKKELKN 1473

Query: 619  EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
            +  N++S +Q+      K    +  +  + +      D    N  ++  +  +  +R+L 
Sbjct: 1474 DDINVNSQQQI-----LKALQDNNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLY 1528

Query: 679  KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
            K+ S +   LP HINK+T ++HT ++   T +GR +S +PNLQ IP +    + IR  FI
Sbjct: 1529 KLYSAFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREIFI 1584

Query: 739  SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
                   I AD+ QIEL+I A I     + + + N++D+H + A+ I    I +++ + R
Sbjct: 1585 PTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINKEDR 1644

Query: 799  RHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
              AK INF ++YG++   L T       +++   +   +   +F  + G+  +     N 
Sbjct: 1645 HVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGLSRW----HNS 1700

Query: 853  VRQNGYVE--TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
            V+Q   +E  T+  R++ +   +  K          A+N P+QG+ ADI + A++ ++K+
Sbjct: 1701 VKQTKALEYSTLSNRKVVFPYFSFTK----------ALNYPVQGTCADILKLALVELYKN 1750

Query: 911  LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
            L    +  K++L +HDE++ EV ++    A +I+V SME +    +  +V  +V++K++ 
Sbjct: 1751 L--RHINGKIILCVHDEIIIEVDKKHQEEALKILVESMENSASFFLK-KVKCEVSVKIAE 1807

Query: 971  NW 972
            NW
Sbjct: 1808 NW 1809


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 175/691 (25%), Positives = 314/691 (45%), Gaps = 125/691 (18%)

Query: 351 FLERLQK-LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
            LE+  K L+ YP  N  Y  I + + +   +++LET       I T  +D   S+   I
Sbjct: 31  LLEKYSKNLTPYP--NADYKIIKDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLI 88

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
            I+  ++          I I+    T ++S             L++F E+    K+GHN+
Sbjct: 89  QIAAPNRP--------VILIEFRSITHKES-------------LRRFIEHHKIPKVGHNL 127

Query: 470 KYDKLVLHRY-GIS--MRGFEDIMLMSYVLDSG--------------------------- 499
            ++   L ++ GI+     + D MLM+ +L +G                           
Sbjct: 128 AFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGVLPIPNLNQSIKNKK 187

Query: 500 ----------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
                       S+ +  +A + L Y+  + L+      P+   +  Q+Q +A  ++ V+
Sbjct: 188 KLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGKPL---TQEQLQ-YAANDAAVV 243

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD----LLKQV------S 599
           L L    R K+I  +L    + ++   +  V+QM + G+ +D D    L K++      +
Sbjct: 244 LPLRDTFRSKIIENQLADAIQ-VELGALARVAQMGLMGMGLDLDRWGELAKEIETRREDA 302

Query: 600 AEISKNLLSLEENIYDLSGEK--FNLSSPKQLGDILFTKLKFPSGAKTKTG-QWKTTAQD 656
           A+I+  +L  +    +L G +   NL S +Q+             A  + G    +T++D
Sbjct: 303 AKIACEVLKPDHAQLNLFGGEASINLDSNEQV-----------IAALARLGIHTNSTSKD 351

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  ++P +  I+E+R  SK  S++ + LP  +N  T R+H   +     +GR +  
Sbjct: 352 TLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAASGRFSFS 411

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQ IP +    ++ R  F+     KLI ADYSQIELRI A IA  + +   + N  D
Sbjct: 412 NPNLQQIPRE----RQYRSCFVPASGYKLIIADYSQIELRIAAEIANDSVMIDAYCNEKD 467

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI----------PRS 826
           +HR+ AA + G  +++V+ Q R+  K +NF +IYG+     AT+LRI             
Sbjct: 468 LHRLTAALVSGKPLDEVTKQERQLGKAVNFGLIYGMG----ATKLRIYAETNYGVKMSIE 523

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY--VETIFGRRIHYDEINSPKSSIRNINE 884
           EA  +   +F  +PG+H++ + T   +R      + T+ GR   + +   P +S+     
Sbjct: 524 EAQRFRDNFFKGYPGLHQWHQDTAFKLRTTKVKDIRTLSGRLRRWKD-EPPLTSL----- 577

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
              +N P+QG++ADIT+ A+  ++  L++  L    ++ +HDE+V EVPE  +   S ++
Sbjct: 578 ---LNTPVQGTSADITKLALHKLNTDLDE--LGGFPIVVVHDEIVLEVPEVHVAEGSTML 632

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +M  A   +    VP+ V   +++ W E+
Sbjct: 633 EEAMISAG-KRFLKSVPVVVEATIADTWAEK 662


>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 155/307 (50%), Gaps = 27/307 (8%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
            ++    R+H   ++ +T TGRL++  PNLQN P       KIR+AF++     LI ADY 
Sbjct: 843  VSGENGRIHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFVAAQGNSLIVADYG 901

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ------ 796
            Q+ELRILAH+A    +   F+   D H   A  ++         G  + +  PQ      
Sbjct: 902  QLELRILAHLANRKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGEVLLEWHPQPGEEKP 961

Query: 797  -----------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
                        RR AK +NFSI YG +   LA   ++   EA + + R++     + ++
Sbjct: 962  PVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYSDRKEVSDW 1021

Query: 846  IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             E+ K   R+   V T+ GR   +  + +   S++   ERAAIN P+QGSAAD+   AM+
Sbjct: 1022 QEQRKFEAREFRRVHTLLGRARWFPSVKNATGSVKGHIERAAINTPVQGSAADVAMCAML 1081

Query: 906  SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
             + K+    +L  K+LLQ+HDE++ E PEE    A  I+V  M K    K  LRV L V+
Sbjct: 1082 EISKNARLEELGWKLLLQVHDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDLSVD 1141

Query: 966  IKVSNNW 972
             K + NW
Sbjct: 1142 SKCAKNW 1148



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           D  GKN L +        FF++    K+ HN  +D  V+  YG  + GF  D M M+ + 
Sbjct: 435 DGGGKNLLVE-----FAPFFQDPSIRKVWHNYSFDNHVIENYGFKVSGFHADTMHMARLW 489

Query: 497 DSGR 500
           DS R
Sbjct: 490 DSSR 493


>gi|212695717|ref|ZP_03303845.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677390|gb|EEB36997.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 210

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 135/211 (63%), Gaps = 4/211 (1%)

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
           I  + + F + +DIH   A+E+F   I++V+   R  AK +NF IIYGIS + L+  L I
Sbjct: 2   IKKMQEAFSHDIDIHTKTASEVFDTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNI 61

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           PR  A +YI+ Y + +P I +Y++      ++ G+V TIF RR +  EINS   ++R+  
Sbjct: 62  PRKRAKEYIENYLNTYPQIKKYMKDIVKKAKEEGFVNTIFNRRRYVPEINSKNFNVRSFG 121

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N PIQGSAADI + AMI+ +++L+  K+  K++LQIHDE++ E  ++++T A +I
Sbjct: 122 ERVALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIEASKKDLTKAKEI 181

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +  SME+A    + L+VPL V+I   ++  E
Sbjct: 182 LKSSMEEA----VKLKVPLLVDIDSGDSMYE 208


>gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
 gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1044

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 158/309 (51%), Gaps = 29/309 (9%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            ++++ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AFI+ P   LI AD
Sbjct: 735  SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 793

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796
            Y Q+ELRILAH+A    + + F    D H   A  ++         G  + +  PQ    
Sbjct: 794  YGQLELRILAHLASCKSMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 853

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+   ++   EA D +  +++    + 
Sbjct: 854  KPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSIEEAQDTVNLWYNDRQEVR 913

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            ++ E  K    QNGYV T+ GR   +    S   + +N  ERAAIN P+QGSAAD+   A
Sbjct: 914  KWQELRKKEAIQNGYVLTLLGRARKFPVYRS--RAQKNHIERAAINTPVQGSAADVAMCA 971

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ + K+    +L  K+LLQIHDE++ E P E    A  I+V+ M +    K  L V L 
Sbjct: 972  MLEISKNQRLKELGWKLLLQIHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLS 1031

Query: 964  VNIKVSNNW 972
            V+ K + NW
Sbjct: 1032 VDAKCAQNW 1040



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           D  G+N   ++IL+  K FFE+    K+ HN  +D  ++  YGI + GF  D M M+ + 
Sbjct: 324 DVLGENG--RDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLW 381

Query: 497 DSGR 500
           DS R
Sbjct: 382 DSSR 385


>gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35]
 gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35]
          Length = 855

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 147/570 (25%), Positives = 270/570 (47%), Gaps = 68/570 (11%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--------RGFEDIMLMSY 494
           + LT+  + YL+K  ++E+   + HN+K+D +  ++Y + +        R   D ML  Y
Sbjct: 195 DCLTEVAVYYLQKILDSENHTIVFHNLKFD-MHFYKYHLGLTFDKAHKERRLHDTMLQHY 253

Query: 495 VLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQEHA 542
           VLD  R +H + S+A K+         L   + +  K+   +K     D I    +  +A
Sbjct: 254 VLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYA 313

Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            ++++  L+L     PK+   EKL  +Y  +  P    + ++E  G+ I  D LK+   +
Sbjct: 314 AKDTDATLRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQ 373

Query: 602 ISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651
           ++ NL    E +Y             E FN +S KQL  +LF  +   P+G  T TG   
Sbjct: 374 LTHNLNKAREKLYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADS 433

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A+ L +++   +PI K +LE R+L+K+ STY + +   I+     + T +    T +G
Sbjct: 434 TDAEALNELST-QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSG 491

Query: 712 RLASLEP-NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S    NLQ +P    +   I+   ++PP  ++I+ D +  E+   A ++    + QV
Sbjct: 492 RLSSSGKLNLQQLPRDESI---IKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQV 548

Query: 771 FENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRHAKTINFSIIYGISPFRLA 818
           F N         D H  +A  +F +  E     K+ P +R+ AK I F I+YG  P ++A
Sbjct: 549 FINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVA 608

Query: 819 TQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             +                    ++A +YI+ YF +FP +  +I+K  + ++ +G++ + 
Sbjct: 609 HSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSH 668

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM-- 920
           FGR+     I+S    ++    R+  NA IQ +++D      +     +    L  +M  
Sbjct: 669 FGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKI 728

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 729 VMLVHDSVVAIVREDLIDQYNEILIRNIQK 758


>gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase
          Length = 924

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 186/351 (52%), Gaps = 25/351 (7%)

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G+K N  S KQLG++LF ++   +   T  G   +T  D  +     +  +K ++E+R+
Sbjct: 497 GGDKINFGSTKQLGELLFERMGLETVIFTDKGA-PSTNDDSLKFMGSQSDFVKVLMEFRK 555

Query: 677 LSKIKSTYADSL-----PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD--- 728
            + + + +   L     P++I      VH  Y++  T+TGRL+S EPN Q  P K +   
Sbjct: 556 ANHLYNNFVSKLSLMIDPDNI------VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPT 609

Query: 729 LGQ---KIRRAFIS--PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           L Q   +I++ F S       ++  DYSQ+ELRIL           ++ +  D+H+ VA+
Sbjct: 610 LFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVAS 669

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHR 838
           + FGV IE+VS   R  +K I F I+Y  S   L+  LR     +   E   +IK+YF R
Sbjct: 670 DAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFIKKYFKR 729

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FP + ++I  TK  V+    V+T+ G   +  +I+S   S  N  ER A+N PIQG+ +D
Sbjct: 730 FPKVSKWIRDTKKHVKDISTVKTLTGATRNLPDIDSIDQSKANEAERQAVNTPIQGTGSD 789

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            T  ++I +++ L +  L +++ + +HD +V + P++E+   ++ + H ME
Sbjct: 790 CTLMSLILINQWLRESGLRSRICITVHDSIVLDCPKDEVLEVAKKVKHIME 840


>gi|209962628|gb|ACJ02109.1| Taq DNA polymerase [Escherichia coli]
          Length = 306

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 107/295 (36%), Positives = 160/295 (54%), Gaps = 30/295 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      I    
Sbjct: 7   EPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI---- 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD++
Sbjct: 62  -VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVL 120

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIKK 171
           A+    AEKEG+ V I++ DKDL QL+S           ++I + H          + +K
Sbjct: 121 ASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWEK 169

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +G+ P++    +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    RE
Sbjct: 170 YGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-RE 228

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            IL + +  +LS  L  +RTD+P+ +        + +  RL +FL+ LEF  L++
Sbjct: 229 KILAHMDDLKLSWDLAKVRTDLPLEVDFAK--RREPDRERLXAFLERLEFGSLLH 281


>gi|309805883|ref|ZP_07699917.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308167724|gb|EFO69869.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           03V1-b]
          Length = 348

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG+S  +RAFYA   L ++ D      GL  NAI  F NML  LL+N +     +H
Sbjct: 4   LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI
Sbjct: 57  MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175
           + T   +    GF VTI++ D+DL QL      +  T K+   D+E     H+ + +G+ 
Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++ 
Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D
Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295


>gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7]
 gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7]
          Length = 855

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 149/572 (26%), Positives = 273/572 (47%), Gaps = 72/572 (12%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISM------RGFEDIMLM 492
           +++T+  + YL+K  ++++   + HN+K+D   +H Y    G+S       R   D ML 
Sbjct: 195 DSITEVAVHYLQKILDSKNHQIVFHNLKFD---MHFYSYHLGLSFEKAHKERRLHDTMLQ 251

Query: 493 SYVLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQE 540
            YVLD  R +H + S+A K+         L   +++  K+   +K     D I    +  
Sbjct: 252 HYVLDERRGTHGLKSLAMKYTDMGDYDFELDKFKEDYCKAHKIKKEDFSYDLIPFDIMWP 311

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A ++++  L+L     PK+   EKL  +Y  +  P    + ++E  G+ I  D LK+  
Sbjct: 312 YAAKDTDATLRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISVDRLKEAQ 371

Query: 600 AEISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
            +++ NL    E +Y             E FN +S KQL  +LF  +   P+G  T TG 
Sbjct: 372 YQLTHNLNKAREKLYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGA 431

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T A+ L ++    +PI K +LE R+L+K+ STY + +   I+     + T +    T 
Sbjct: 432 DSTNAEALNEL-ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTT 489

Query: 710 TGRLASLEP-NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +GRL+S    NLQ +P    +   I+   ++PP  ++I+ D +  E+   A ++    + 
Sbjct: 490 SGRLSSSGKLNLQQLPRDESI---IKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQ 546

Query: 769 QVFENSL-------DIHRMVAAEIFGV-----NIEKVSPQMRRHAKTINFSIIYGISPFR 816
           QVF N         D H  +A  +F +     +++K+ P +R+ AK I F I+YG  P +
Sbjct: 547 QVFINMKNEPDKYPDFHSNIAHMVFKLTCEPRDVKKLFPALRQAAKAITFGILYGSGPAK 606

Query: 817 LATQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           +A  +                    ++A DYI+ YF +FP +  +I+K  + ++  G++ 
Sbjct: 607 VAHSVNEALLEQAAKTGEPFVECTVADAKDYIETYFGQFPQLKRWIDKCHDQIKNFGFIY 666

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           + FGR+     I+S    ++    R+  NA IQ +++D      I   + +    L  +M
Sbjct: 667 SHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAIDADEEILSLGLGKEM 726

Query: 921 --LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
             ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 727 KIVMLVHDSVVAIVREDLIDQYNEILIRNIQK 758


>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1047

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 159/309 (51%), Gaps = 29/309 (9%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            ++++ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AF++ P   L+ AD
Sbjct: 738  SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVAD 796

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796
            Y Q+ELRILAH+     + + F+   D H   A  ++         G  I +  PQ    
Sbjct: 797  YGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHIREAVENGQVILEWHPQPGED 856

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+   ++   EA D +K +++    + 
Sbjct: 857  KPPVPLLKDAFGSERRKAKMLNFSIAYGKTAIGLSRDWKVSVEEAQDTVKLWYNDRQEVR 916

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            ++ E+ K    ++GYV T+ GR   +    S   + +N  +RAAIN P+QGSAAD+   A
Sbjct: 917  KWQERRKKEAIEDGYVRTLLGRSRRFPRYKS--RAQKNHIQRAAINTPVQGSAADVAMCA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ +  + +  KL  ++LLQIHDE++ E P E    A  I+V  M K    +  L V L 
Sbjct: 975  MLEISTNQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLS 1034

Query: 964  VNIKVSNNW 972
            V+ K + NW
Sbjct: 1035 VDAKCAQNW 1043



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           D  G+N   +E+L+  K +FE+    K+ HN  +D  ++  +GI + GF  D M M+ + 
Sbjct: 331 DVLGENG--REVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLW 388

Query: 497 DSGR 500
           DS R
Sbjct: 389 DSAR 392


>gi|281207443|gb|EFA81626.1| DNA polymerase theta short isoform [Polysphondylium pallidum PN500]
          Length = 1192

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 227/464 (48%), Gaps = 66/464 (14%)

Query: 566  LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLS 624
            L +   ++ P+  ++++ME  GI  D ++ +     + K +  L    + L    K ++ 
Sbjct: 707  LKILFEIEMPVTPILARMEFIGIGFDDEICQNTRELVQKKIDYLIYKAHLLVPRLKLDME 766

Query: 625  SPKQLGDILFTKLKFP-----SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            S  Q+ D+++  LK       +  K     + T A  LE I+  ++P    ++E+R+LS 
Sbjct: 767  SKIQMSDVMYNWLKLTKPDSRTNKKVLKESYSTNAHHLETIS-HEHPFPNILMEYRKLSH 825

Query: 680  IKSTYADSLPNHINKRTQRVHTFYS-LASTM--TGRLASLEPNLQNI--PIK-------- 726
              + YAD L  +  + T      YS +  T+  TGRLA + PNLQ+I  PI+        
Sbjct: 826  HINNYADELRKYCYRSTDNSMRIYSTILQTIVPTGRLAMVFPNLQSIAHPIEFKVAPTFT 885

Query: 727  -------------------------------------TDLGQKIRRAFISPPTKKLISAD 749
                                                   L  KIR +F+       +SAD
Sbjct: 886  PSPLSIASNSSDIEIPAVDLENHSSQYNNLVAMESKCETLSIKIRDSFLPKQGYIFLSAD 945

Query: 750  YSQIELRILAHIAKITPLYQVFENS-LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            YSQIELRILAH ++   L ++F NS +D+ ++++ ++  + +E++    R  AK + + I
Sbjct: 946  YSQIELRILAHFSQDPKLLEIFNNSTVDVFKLISHQMSKIPLEQIKDSDRTIAKHLCYGI 1005

Query: 809  IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            +YG+   +LA  L   + +A   + R+   +  + +Y+    +   +NG+VET FGR+ +
Sbjct: 1006 LYGMGIGKLAHDLNTTKDKAKAALLRFKTTYQVLTDYLTSVGDSCLKNGFVETFFGRKRY 1065

Query: 869  YDEINSPKSSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            + E+       +  NE      R A N   QG+AADI++ AMI V K L +  +  +++L
Sbjct: 1066 FREVFEVYKDTKVTNEVKESAKRKAKNTIPQGTAADISKLAMIQVDKKLNERGIPAEIVL 1125

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
            Q+HDEL+ EVPE ++   + I+  SME A   K+++ +P+K++I
Sbjct: 1126 QVHDELLLEVPESQLAEVALIVKESMESAA--KLSIPIPIKMSI 1167


>gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1]
          Length = 924

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 185/351 (52%), Gaps = 25/351 (7%)

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G+K N  S KQLG++LF ++   +   T  G   +T  D  +     +  +K ++E+R 
Sbjct: 497 GGDKINFGSTKQLGELLFERMGLETVIFTDKGA-PSTNDDSLKFMGSQSDFVKVLMEFRN 555

Query: 677 LSKIKSTYADSL-----PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD--- 728
            + + + +   L     P++I      VH  Y++  T+TGRL+S EPN Q  P K +   
Sbjct: 556 GNHLYNNFVSKLSLMIDPDNI------VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPT 609

Query: 729 LGQ---KIRRAFIS--PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           L Q   +I++ F S       ++  DYSQ+ELRIL           ++ +  D+H+ VA+
Sbjct: 610 LFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVAS 669

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHR 838
           + FGV IE+VS   R  +K I F I+Y  S   L+  LR     +   E   +IK+YF R
Sbjct: 670 DAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFIKKYFKR 729

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FP + ++I  TK  V+    V+T+ G   +  +I+S   S  N  ER A+N PIQG+ +D
Sbjct: 730 FPKVSKWIRDTKKHVKDISTVKTLTGATRNLPDIDSIDQSKANEAERQAVNTPIQGTGSD 789

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            T  ++I +++ L +  L +++ + +HD +V + P++E+   ++ + H ME
Sbjct: 790 CTLMSLILINQWLRESGLRSRICITVHDSIVLDCPKDEVLEVAKKVKHIME 840


>gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 146/570 (25%), Positives = 272/570 (47%), Gaps = 68/570 (11%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--------RGFEDIMLMSY 494
           + LT+  + YL+K  ++E+   + HN+K+D +  ++Y + +        R   D ML  Y
Sbjct: 195 DCLTEVAVYYLQKILDSENHTIVFHNLKFD-MHFYKYHLGLTFDKAHKERRLHDTMLQHY 253

Query: 495 VLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQEHA 542
           VLD  R +H + S+A K+         L   + +  K+   +K     D I    +  +A
Sbjct: 254 VLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYA 313

Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            ++++  ++L     PK+   EKL  +Y  +  P    + ++E  G+ I  D LK+   +
Sbjct: 314 AKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQ 373

Query: 602 ISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651
           ++ NL    E +Y             E FN +S KQL  +LF  +   P+G  T TG   
Sbjct: 374 LTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADS 433

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A+ L ++    +PI K +LE R+L+K+ STY + +   I+     + T +    T +G
Sbjct: 434 TDAEALNEL-ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSG 491

Query: 712 RLASL-EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  + NLQ +P    +   I+   I+PP  ++I+ D +  E+   A ++    + QV
Sbjct: 492 RLSSSGKLNLQQLPRDESI---IKGCVIAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQV 548

Query: 771 FENSL-------DIHRMVAAEIFGV-----NIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           F N         D H  +A  +F +     +++K+ P +R+ AK I F I+YG  P ++A
Sbjct: 549 FINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVA 608

Query: 819 TQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             +                    ++A +YI+ YF +FP +  +I+K  + ++ +G++ + 
Sbjct: 609 HSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSH 668

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM-- 920
           FGR+     I+S    ++    R+  NA IQ +++D      +     +    L  +M  
Sbjct: 669 FGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKI 728

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 729 VMLVHDSVVAIVREDLIDQYNEILIRNIQK 758


>gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase
 gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5]
          Length = 829

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 146/570 (25%), Positives = 269/570 (47%), Gaps = 68/570 (11%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--------RGFEDIMLMSY 494
           + LT+  + YL+K  ++E+   + HN+K+D +  ++Y + +        R   D ML  Y
Sbjct: 169 DCLTEVAVYYLQKILDSENHTIVFHNLKFD-MHFYKYHLGLTFDKAHKERRLHDTMLQHY 227

Query: 495 VLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQEHA 542
           VLD  R +H + S+A K+         L   + +  K+   +K     D I    +  +A
Sbjct: 228 VLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYA 287

Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            ++++  ++L     PK+   EKL  +Y  +  P    + ++E  G+ I  D LK+   +
Sbjct: 288 AKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQ 347

Query: 602 ISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651
           ++ NL    E +Y             E FN +S KQL  +LF  +   P+G  T TG   
Sbjct: 348 LTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADS 407

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A+ L ++    +PI K +LE R+L+K+ STY + +   I+     + T +    T +G
Sbjct: 408 TDAEALNEL-ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSG 465

Query: 712 RLASLEP-NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S    NLQ +P    +   I+   ++PP  ++I+ D +  E+   A ++    + QV
Sbjct: 466 RLSSSGKLNLQQLPRDESI---IKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQV 522

Query: 771 FENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRHAKTINFSIIYGISPFRLA 818
           F N         D H  +A  +F +  E     K+ P +R+ AK I F I+YG  P ++A
Sbjct: 523 FINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVA 582

Query: 819 TQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             +                    ++A +YI+ YF +FP +  +I+K  + ++ +G++ + 
Sbjct: 583 HSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSH 642

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM-- 920
           FGR+     I+S    ++    R+  NA IQ +++D      +     +    L  +M  
Sbjct: 643 FGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKI 702

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 703 VMLVHDSVVAIVREDLIDQYNEILIRNIQK 732


>gi|299821685|ref|ZP_07053573.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
 gi|299817350|gb|EFI84586.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
          Length = 290

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 151/266 (56%), Gaps = 13/266 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           K+ +L +VDG + ++RAFYAT +  +     DG+P N + GF   L   L    ++S  +
Sbjct: 4   KQENLLVVDGMALLFRAFYATAVSKQFMFNQDGIPTNGVQGFMKHLLAAL----RQSDPT 59

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  + +D  + TFRNE+Y  YKANR   PE ++PQ  L +     FG   + + G+EADD
Sbjct: 60  HALICWDMGSKTFRNELYDGYKANRTAPPEEMIPQFDLAKEVAAGFGFVNVGVPGYEADD 119

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            I T T  +  +  + T++S DKDL+QL+SP+  ++   K     ++ D     ++ GI 
Sbjct: 120 CIGTIT-ASLGQSLSTTVLSGDKDLLQLLSPSNQVWIMQKGFGNYKRYDEATFYEEMGIT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + ++AL GD+ D  PG+ GIG KTA  L+Q +G++E +L N  ++K  ++R+ I E
Sbjct: 179 PKQFIDVKALMGDTSDGYPGVRGIGEKTALTLIQTFGSIEGVLANLEQLKPAQKRK-IQE 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEH 261
                 LSR+L  +   VP+ +  E 
Sbjct: 238 DLAMLELSRQLAEIHVAVPLEVNYEQ 263


>gi|311030373|ref|ZP_07708463.1| 5'-3' exonuclease [Bacillus sp. m3-13]
          Length = 289

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/260 (36%), Positives = 150/260 (57%), Gaps = 13/260 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L+DG + ++R+F+AT + +R     +G+P NAI GF     K +  S +    +H   
Sbjct: 4   VLLIDGMALLFRSFFATSVYNRFMYTSNGIPTNAIQGFV----KHMITSMETFEPTHVVC 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E++ DYKANRP  P+ L+PQ  LV+   +AF IP I + GFEADD + T
Sbjct: 60  CWDMGSKTFRTEMFDDYKANRPAPPQELIPQFDLVKEVVEAFDIPNIGLAGFEADDCLGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +  +E   V I++ D+D++QL+ P   +   +K     E +D     +K G+ P+++
Sbjct: 120 LAELYREEA-EVIILTGDQDVLQLIKPNIKVALLMKGYGNYEVLDENGFYEKKGLTPQQL 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+A+ GDS DN PG+ G+G KTA  LL EY  ++ IL N S +  K +R+   +  E 
Sbjct: 179 IDLKAIMGDSSDNYPGVKGVGEKTATKLLMEYQTVDGILENLSAL-TKSQRQKFEDSLEL 237

Query: 240 ARLSRKLVMLRTDVPITIPL 259
             LSR+L  ++ DVP+   L
Sbjct: 238 LHLSRELATIKCDVPVYCEL 257


>gi|74228402|dbj|BAE24040.1| unnamed protein product [Mus musculus]
          Length = 299

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 144/275 (52%), Gaps = 37/275 (13%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R AF+  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   +  + 
Sbjct: 23  MRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDA 82

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           V   +R+HAK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++  T   
Sbjct: 83  VGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKN 142

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
            R+NG+VETI GRR +   I       +   ER AIN  +QGSAADI + A +++ K LE
Sbjct: 143 CRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLE 202

Query: 913 DHKLATK---------------------------------MLLQIHDELVFEVPEEEITT 939
             +   K                                  +LQ+HDEL++EV EE++  
Sbjct: 203 TFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQ 262

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 263 VAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 293


>gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5]
 gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 145/570 (25%), Positives = 272/570 (47%), Gaps = 68/570 (11%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--------RGFEDIMLMSY 494
           + LT+  + YL+K  ++E+   + HN+K+D +  ++Y + +        R   D ML  Y
Sbjct: 195 DCLTEVAVYYLQKILDSENHTIVFHNLKFD-MHFYKYHLGLTFDKAHKERRLHDTMLQHY 253

Query: 495 VLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQEHA 542
           VLD  R +H + S+A K+         L   + +  K+   +K     D I    +  +A
Sbjct: 254 VLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYA 313

Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            ++++  ++L     PK+   EKL  +Y  +  P    + ++E  G+ I  D LK+   +
Sbjct: 314 AKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQ 373

Query: 602 ISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651
           ++ NL    E +Y             E FN +S KQL  +LF  +   P+G  T TG   
Sbjct: 374 LTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADS 433

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A+ L ++    +PI K +LE R+L+K+ STY + +   I+     + T +    T +G
Sbjct: 434 TDAEALNEL-ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSG 491

Query: 712 RLASL-EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  + NLQ +P    +   I+   ++PP  ++I+ D +  E+   A ++    + QV
Sbjct: 492 RLSSSGKLNLQQLPRDESI---IKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQV 548

Query: 771 FENSL-------DIHRMVAAEIFGV-----NIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           F N         D H  +A  +F +     +++K+ P +R+ AK I F I+YG  P ++A
Sbjct: 549 FINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVA 608

Query: 819 TQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             +                    ++A +YI+ YF +FP +  +I+K  + ++ +G++ + 
Sbjct: 609 HSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSH 668

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM-- 920
           FGR+     I+S    ++    R+  NA IQ +++D      +     +    L  +M  
Sbjct: 669 FGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKI 728

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 729 VMLVHDSVVAIVREDLIDQYNEILIRNIQK 758


>gi|212639099|ref|YP_002315619.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Anoxybacillus flavithermus WK1]
 gi|212560579|gb|ACJ33634.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Anoxybacillus flavithermus WK1]
          Length = 277

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 150/265 (56%), Gaps = 12/265 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M++E HL L+DG + ++R+FYAT P       G+P NA+ G      K ++ +      +
Sbjct: 1   MERE-HLLLIDGMALLFRSFYATAPRWMMNSRGVPTNAVYGVV----KHIEAATNALQPT 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H    +D  + TFR E +PDYKANR + P  L+PQ  L +      GIP I + G EADD
Sbjct: 56  HVVCCWDMGSTTFRTEWFPDYKANRGEPPHELIPQFDLAKEVVAMLGIPNIGVLGAEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            I +      +E   ++I++ D+DL QL+S    +Y   K     E   ++  I++ GI 
Sbjct: 116 CIGSLVK-QYREEMRISIMTGDRDLFQLLSERVTVYLLAKGIGNYEAYTLDRFIEEKGIQ 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++AL GD  DN PG+ GIG K A  L+Q+YG++E I+ N + +  K +++ I E
Sbjct: 175 PQQLIDVKALMGDPSDNYPGVRGIGEKQAVKLIQQYGSIEGIIANLANLT-KAQQQKITE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLE 260
           + +   LSRKL  +  D+PI + LE
Sbjct: 234 HLDLLHLSRKLAAIHCDIPIQLELE 258


>gi|28493259|ref|NP_787420.1| DNA polymerase I [Tropheryma whipplei str. Twist]
 gi|28476300|gb|AAO44389.1| DNA polymerase I [Tropheryma whipplei str. Twist]
          Length = 356

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 15/308 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + +   L LVDG S  +R+FY T  ++   +G+ VNA+ GF N L +LL++       SH
Sbjct: 5   LDQSKRLILVDGHSLAFRSFYGTKAIAVV-NGVQVNALYGFVNRLTQLLESGP----VSH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           FAV FD    +FR E YP+YK  R K+PE   PQ+ L++      G+    +Q +EADDI
Sbjct: 60  FAVAFDVSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEFLHLIGVNHFAVQNYEADDI 119

Query: 121 IATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGI 174
           IAT + +A +EGF+ V I+S D+DL+QLV+    L     + ++       E V+ ++GI
Sbjct: 120 IATLSRLALEEGFSDVRILSGDRDLIQLVNNKVSLLFFSAKHRLGFAVYTPEAVMDRYGI 179

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P     + AL G+S DN+PGI  IG KTA  LLQ+YG L+ I+ +   I      +NI 
Sbjct: 180 EPHVYPDMAALVGESSDNLPGIKKIGEKTATTLLQKYGCLQKIIESRWEISGVV-GQNIR 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEFTKLINRVATTYD 293
                A  +RKL  L  D+P+   +  L L  + +  +L  FL+      +  R+     
Sbjct: 239 NDYHVALRNRKLNTLVNDLPLPASVSDLSLSGEIDTKKLEGFLRRYRMNSITPRLLRCLQ 298

Query: 294 --CDAANI 299
              +AAN+
Sbjct: 299 KFTNAANL 306


>gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5]
          Length = 825

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 146/570 (25%), Positives = 269/570 (47%), Gaps = 68/570 (11%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--------RGFEDIMLMSY 494
           + LT+  + YL+K  ++E+   + HN+K+D +  ++Y + +        R   D ML  Y
Sbjct: 165 DCLTEVAVYYLQKILDSENHTIVFHNLKFD-MHFYKYHLGLTFDKAHKERRLHDTMLQHY 223

Query: 495 VLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQEHA 542
           VLD  R +H + S+A K+         L   + +  K+   +K     D I    +  +A
Sbjct: 224 VLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYA 283

Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            ++++  ++L     PK+   EKL  +Y  +  P    + ++E  G+ I  D LK+   +
Sbjct: 284 AKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQ 343

Query: 602 ISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651
           ++ NL    E +Y             E FN +S KQL  +LF  +   P+G  T TG   
Sbjct: 344 LTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADS 403

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A+ L ++    +PI K +LE R+L+K+ STY + +   I+     + T +    T +G
Sbjct: 404 TDAEALNEL-ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSG 461

Query: 712 RLASLEP-NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S    NLQ +P    +   I+   ++PP  ++I+ D +  E+   A ++    + QV
Sbjct: 462 RLSSSGKLNLQQLPRDESI---IKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQV 518

Query: 771 FENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRHAKTINFSIIYGISPFRLA 818
           F N         D H  +A  +F +  E     K+ P +R+ AK I F I+YG  P ++A
Sbjct: 519 FINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVA 578

Query: 819 TQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             +                    ++A +YI+ YF +FP +  +I+K  + ++ +G++ + 
Sbjct: 579 HSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSH 638

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM-- 920
           FGR+     I+S    ++    R+  NA IQ +++D      +     +    L  +M  
Sbjct: 639 FGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKI 698

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 699 VMLVHDSVVAIVREDLIDQYNEILIRNIQK 728


>gi|258539931|ref|YP_003174430.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
 gi|257151607|emb|CAR90579.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
          Length = 191

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 121/190 (63%), Gaps = 5/190 (2%)

Query: 784 EIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +IFG++  ++V+P MRR AK  NF I+YGIS + LA  + I R +A  +I  YF ++P +
Sbjct: 2   KIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPKV 61

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
           H+Y+E      R++GYVET+F RR +  +I+S   ++R   ER A+N PIQGSAADI + 
Sbjct: 62  HDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKV 121

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI + K+L++  L  KMLLQ+HDEL+FE P  E+    Q++   M+ A    ++L VPL
Sbjct: 122 AMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSA----VSLAVPL 177

Query: 963 KVNIKVSNNW 972
           KV       W
Sbjct: 178 KVESHYGPTW 187


>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
          Length = 1855

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 155/310 (50%), Gaps = 30/310 (9%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            Q  NH+ ++DG+   Y+A+     L+  H+G P+ A+ GF   L K+L    KE    + 
Sbjct: 773  QNNNHVVIIDGTPLAYKAYNTISGLT--HNGEPIGALFGFTKALLKIL----KELKPDYV 826

Query: 62   AVIFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             V FD    A  FR++IY  YKANRP  P  L  QLPL+     A GI   +   FE+DD
Sbjct: 827  LVCFDPTDGAGNFRHDIYEKYKANRPSTPLDLKQQLPLLPQVCTALGIEYAKQSRFESDD 886

Query: 120  IIATYTYIAEKEG---------------------FAVTIISTDKDLMQLVSPTTCLYDTV 158
            +IATY  I E+                       +  TI+S DKD++QLVS    +Y+T 
Sbjct: 887  LIATYANIVEQANKKLAAGNDNLVVDGQQQQQQKYRATIVSDDKDMLQLVSDDVHIYNTR 946

Query: 159  KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
                   + VI K G+P   +   QAL GDS+DNIPG+P +G K+A+ ++   G+++N+L
Sbjct: 947  TNSIFCHQDVIDKMGVPSHLITSFQALAGDSVDNIPGVPSLGPKSASAIINSLGHIDNVL 1006

Query: 219  INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
             N  +I   K RE +   +E  ++S +L  L       +PLE L     N  + + FL  
Sbjct: 1007 ANIEQIPL-KFREKVRNNSEQIKISYQLATLSKQAETKVPLEGLKWNPVNKLQFVEFLDK 1065

Query: 279  LEFTKLINRV 288
              F  +  ++
Sbjct: 1066 YNFNNIKGKL 1075



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 142/301 (47%), Gaps = 26/301 (8%)

Query: 697  QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
             R+HT  ++ +T TGRL+S  PNLQN P       KIR+AF   P   L+ ADY Q+ELR
Sbjct: 1556 HRLHTSVNV-NTETGRLSSRRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLELR 1614

Query: 757  ILAHIAKITPLYQVFENSLDIHRMVAAEIFG--------------VNIEKVSPQ------ 796
            +L HI     +   F    D H   A  ++                + E   P+      
Sbjct: 1615 LLGHITNCKSMLDAFRVGGDFHSRTAMGMYPHVRAAVDAGEVLLEWDGEGAPPKPLLKDK 1674

Query: 797  ---MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
                RR AKT+NFSI YG +   L+    +  SEA + + R++   P +  +   T    
Sbjct: 1675 FASERRKAKTLNFSIAYGKTAHGLSKDWNVTLSEAQNTLNRWYEDRPEVLLWQRSTIQIA 1734

Query: 854  RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
             Q  +  T+ GR     +I+S        +ERA+IN P+QG AADI  +AM+ + +    
Sbjct: 1735 HQKKWTRTLMGRYRLLPDIDSKARGFVGHSERASINTPLQGGAADIVMKAMLIIEQDARL 1794

Query: 914  HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +L  ++++QIHDEL+ E PEE    A  I++  M         L V L V+ + +  W 
Sbjct: 1795 KELGYRLIMQIHDELILEGPEEHAPEARDIVIKLMGNPL--NKPLLVDLVVDCRFAKTWY 1852

Query: 974  E 974
            E
Sbjct: 1853 E 1853



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 36/227 (15%)

Query: 448  EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG---RSSH 503
            EIL   K++FE+E   K+ HN  +D+ V + + I + GF  D MLM+ + D+    R  +
Sbjct: 1193 EILQIFKEYFEDESIFKVWHNYAFDRHVFYNHNIDVVGFGGDTMLMARLWDASRMMRGGY 1252

Query: 504  DIASIAQKWLSYTRKEI--------LKSRKSSI------PIDKISDSQVQ-----EHAIE 544
             +  + +  L   +  +        LKS  +        P++ +  S        E++  
Sbjct: 1253 SLEGLTKDLLDKHKTNMDDLFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTKWIEYSSR 1312

Query: 545  NSNVILQLWLLLRPKLIV-------EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            ++ V   L   L  KL+          +   Y  + +P   +++ ME  G+++D + LK 
Sbjct: 1313 DAEVTWMLRENLHKKLMTMEWIGPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKG 1372

Query: 598  VSAEISKNLLSLEENI------YDLSGEKFNLSSPKQLGDILFTKLK 638
            V     +++    EN       Y  + +  N+ S  Q+   LF   +
Sbjct: 1373 VEVIAQRDITEHNENFRRWALGYCENVKHMNIDSDAQVQQFLFAPCR 1419


>gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus]
 gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus]
          Length = 943

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/284 (36%), Positives = 153/284 (53%), Gaps = 11/284 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N + LVDGS ++YRA++A P L+ + +G PV  I G  +M+  L+   +     SH AV
Sbjct: 8   HNPIILVDGSFYMYRAYHAYPPLTTQ-NGQPVWVIYGVISMIKSLITRYQ----PSHMAV 62

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR++++  YK+NR KIP+ L  Q+       +A GI  + I   EADD+IAT
Sbjct: 63  IFDVSGKTFRDDLFKQYKSNRIKIPDDLSIQIIPTHKIIKAMGISVLNIPNVEADDVIAT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 +    V I + DKD+ Q+VS    L +T+    ++   V KK+G+PP  +    
Sbjct: 123 LATFYAQLNKTVLISTGDKDMAQIVSSNIILINTMSNIMLNPTEVEKKFGVPPTLIADYL 182

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PGIG KTA ++L + GNL  +  N + I Q      KK  + +L   
Sbjct: 183 ALVGDRADNIPGVPGIGKKTAQIVLNQIGNLNILYQNLNNILQLNIRGRKKIYQALLINK 242

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           E A L  KL  ++ DVP+      L++++ N   LI      EF
Sbjct: 243 ELAFLCYKLATIKIDVPLQESDYKLLIQEINTQDLILLFTQYEF 286


>gi|28572629|ref|NP_789409.1| DNA polymerase I [Tropheryma whipplei TW08/27]
 gi|28410761|emb|CAD67147.1| DNA polymerase I [Tropheryma whipplei TW08/27]
          Length = 356

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 164/306 (53%), Gaps = 15/306 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDG S  +R+FY T  ++   +G+ VNA+ GF N L +LL++       SHFA
Sbjct: 7   QSKRLILVDGHSLAFRSFYGTKAIAVV-NGVQVNALYGFVNRLTQLLESGP----VSHFA 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    +FR E YP+YK  R K+PE   PQ+ L++      G+    +Q +EADDIIA
Sbjct: 62  VAFDVSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEFLHLIGVNHFAVQNYEADDIIA 121

Query: 123 TYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPP 176
           T + +A +EGF+ V I+S D+DL+QLV+    L     + ++       E V+ ++GI P
Sbjct: 122 TLSRLALEEGFSDVRILSGDRDLIQLVNNKVSLLFFSAKHRLGFAVYTPEAVMDRYGIEP 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
                + AL G+S DN+PGI  IG KTA  LLQ+YG L+ I+ +   I      +NI   
Sbjct: 182 HVYPDMAALVGESSDNLPGIKKIGEKTATTLLQKYGCLQKIIESRWEISGVV-GQNIRND 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEFTKLINRVATTYD-- 293
              A  +RKL  L  D+P+   +  L L  + +  +L  FL+      +  R+       
Sbjct: 241 YHVALRNRKLNTLVNDLPLPASVSDLSLSGEIDTKKLEGFLRRYRMNSITPRLLRCLQKF 300

Query: 294 CDAANI 299
            +AAN+
Sbjct: 301 TNAANL 306


>gi|291532675|emb|CBL05788.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Megamonas
           hypermegale ART12/1]
          Length = 240

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 133/227 (58%), Gaps = 10/227 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DGSS +YRAF+A PLL+    G+  NAI GF NML K+L   + ++I     V F
Sbjct: 18  RFIIIDGSSLMYRAFFALPLLTSSS-GIYTNAIMGFANMLGKILTEYKPDNIV----VAF 72

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR ++Y +YK  R K P+ L  Q+PL+R   +A GI  IE   +EADDII T  
Sbjct: 73  DKSRQTFRTQMYAEYKGQREKTPDELKSQIPLLREFLEALGIAFIEKDNYEADDIIGTLA 132

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKMV 180
             A  + +   I++ DKD +QL+ P   +  T +     +  D E   +K+ G+ P K++
Sbjct: 133 TKAASQDYEALIVTGDKDALQLIRPNLKVMLTKRGIMDMQIFDEEAFKEKYAGLEPIKLI 192

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            ++AL GDS DNIPG+PGIG KTA  LL +Y +LEN+L N   +  K
Sbjct: 193 DIKALMGDSSDNIPGVPGIGEKTALKLLSQYQDLENLLNNIDNVSGK 239


>gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 536

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 160/296 (54%), Gaps = 30/296 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      I   
Sbjct: 8   FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDSVI--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD+
Sbjct: 64  --VVFDAKAPSFRHEAYEGYKARRAPTPEDFPRQLALIKELVDLLGLVRLEVPGYEADDV 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170
           +A+    AEKEG+ V I++ DKDL QL+S           ++I + H          + +
Sbjct: 122 LASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 170

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K G+ P++    +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R++    R
Sbjct: 171 KHGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLERLLKNLDRLRPAI-R 229

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           E IL + +  +LS  L  +RTD+P+ +  +     + +  RL +FL+ LEF  L++
Sbjct: 230 EKILAHMDDLKLSWDLAKVRTDLPLEV--DFAKRREPDRERLRAFLERLEFGSLLH 283



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 25/199 (12%)

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           R G+ +   +D ML++Y+LD   ++ +   +A+++     +E                  
Sbjct: 362 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 401

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E A  +  +   LW  L  +   E+LL +Y  +++P+  V++ ME TG+++D   L+ 
Sbjct: 402 AGERAALSERLFANLWERLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 458

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656
           +S E+++ +  LE  ++ L+G  FNL+S  QL  +LF +L  P+  KT KTG+  T+A  
Sbjct: 459 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 518

Query: 657 LEQINCGDNPIIKNILEWR 675
           LE +    +PI++ IL++R
Sbjct: 519 LEALREA-HPIVEKILQYR 536


>gi|310640968|ref|YP_003945726.1| 5-3 exonuclease, n-terminal resolvase-like domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245918|gb|ADO55485.1| 5-3 exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus polymyxa SC2]
          Length = 298

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/271 (36%), Positives = 144/271 (53%), Gaps = 13/271 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           + E  + LVDG + ++RA+YAT     + R   G+P NAI GF    W  +Q        
Sbjct: 4   RNEQSVMLVDGMALLFRAYYATAANGYIRRTKAGVPTNAIYGFIRYFWDAVQTFNP---- 59

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H    +D    TFR E +  YK NR   P+ L+PQ  L+R  T + GIP I  +GFEAD
Sbjct: 60  THVICCWDMGGTTFRGEHFAAYKGNRADAPDDLIPQFTLIREVTDSLGIPNIGAEGFEAD 119

Query: 119 DIIATYT-YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWG 173
           D I T   + ++ E   V I+S D DL+QLV   T +    K     +    E ++ + G
Sbjct: 120 DCIGTLARHYSQNEDMDVMILSGDHDLLQLVDERTQVIIMKKGHGNYMVYTPETLLSEKG 179

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++V L+ L GD+ DN PG+ GIG KTA  L+QEY ++E IL N  ++    R++ I
Sbjct: 180 LKPRQVVDLKGLMGDASDNYPGVRGIGEKTALKLVQEYDSIEGILENLDQLTPSVRKK-I 238

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
               +   LSRKL  +  DVP+   L+  +L
Sbjct: 239 ESDLDMLHLSRKLAKIHCDVPVACALDSCLL 269


>gi|327439080|dbj|BAK15445.1| 5'-3' exonuclease [Solibacillus silvestris StLB046]
          Length = 292

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 152/271 (56%), Gaps = 23/271 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           HL +VDG + ++R+F+A+  ++   R  DG P N + GF   +    QN  +    +H A
Sbjct: 5   HLLIVDGMALLFRSFFASAAMNQFIRLDDGTPSNGVQGFARHVLTA-QNLMQ---PTHLA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D  AVTFRN++Y  YKANRP  PE +LPQ  + +  ++  G      QG EADD+I 
Sbjct: 61  VCWDMGAVTFRNDLYDGYKANRPAPPEEMLPQFDMAKRVSEMIGWQNFGTQGLEADDLIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---------YDTVKEEKIDIEHVIKKWG 173
           +      K+   +T+IS DKDL+QL++P+T +         YD   E +      ++++G
Sbjct: 121 SMIK-KWKDDAQITVISGDKDLLQLLNPSTKIAFTKKGYTEYDVYTESRF-----VEEYG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P++   ++A  GD+ D  PG+ GIG KTA  L+Q +G+++ +L     +K  +R + I
Sbjct: 175 IAPKQFAEVKAFMGDTSDGYPGVKGIGPKTALQLIQNHGSIDGVLEALPTLKPGQRIK-I 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
            E     RLS +L  +  DVPI + L+HL L
Sbjct: 234 SENLAMLRLSHQLATIHCDVPIDVELDHLAL 264


>gi|266624220|ref|ZP_06117155.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
 gi|288863948|gb|EFC96246.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
          Length = 277

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 157/284 (55%), Gaps = 14/284 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L+    E  A H
Sbjct: 1   MDKEK-LVLIDGHSIMSRAFYGVPELTNS-EGLHTNAVYGFLNIMFKILE----EEQADH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR++++  YK  R  +PE L  Q+ L++    A  +P + + GFEADDI
Sbjct: 55  VAVAFDLKEPTFRHQMFEQYKGTRKPMPEELHEQVDLMKEVLGAMEVPILTMAGFEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWG 173
           + T    ++ +G  V ++S D+DL+QL         P T    T  ++    E V  ++ 
Sbjct: 115 LGTVAKESQAKGVEVVVVSGDRDLLQLADEHIKIRIPKTSRGGTEIKDYYP-EDVKNEYH 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P++ + ++AL GDS DNIPG+P IG KTAA +++ YG++EN   +   IK  + ++++
Sbjct: 174 VTPKEFIDMKALMGDSSDNIPGVPSIGEKTAATIIEAYGSIENAYAHIEEIKPPRAKKSL 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
            E    A+LS++L  + T+  I    +    +    P    ++K
Sbjct: 234 EENYSLAQLSKELAAINTNCGIEFSYDDAKTDSLYTPAAYQYMK 277


>gi|239827422|ref|YP_002950046.1| 5'-3' exonuclease [Geobacillus sp. WCH70]
 gi|239807715|gb|ACS24780.1| 5'-3' exonuclease [Geobacillus sp. WCH70]
          Length = 292

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 165/298 (55%), Gaps = 19/298 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           QK   L L+DG + ++R+FYAT L        DG+P NA+ GF   L   + + +     
Sbjct: 3   QKSQKLLLIDGMALLFRSFYATALYGNFMFTSDGIPTNAVYGFVKHLIASVHHIK----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H    +D  + TFR E++P YKANR + P  L+PQ  L +    AF IP I + G EAD
Sbjct: 59  THVVCCWDMGSATFRTEMFPMYKANRGEPPLELIPQFELAKHVVSAFDIPNIGVLGAEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI------KKW 172
           D I T T    K+   + I++ D+DL+QL+S T  +Y  + ++ I   H+       K+ 
Sbjct: 119 DCIGTLTK-QWKDEMDIAILTGDRDLLQLLSETVTVY--LLDKGIGNYHIYTLERFRKEM 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            I P + V ++AL GD+ DN PG+ GIG KTA  L+++YG++E IL +   +  K +R+ 
Sbjct: 176 EILPSQWVDVKALMGDASDNYPGVRGIGEKTALKLVRQYGSIEGILEHLPLL-TKSQRQK 234

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + E+ E   LSRKL  +  D+PI + +E     D +  ++     ALEF K ++R+ T
Sbjct: 235 LQEHEEMLHLSRKLAKIYCDLPIALRIEEAKW-DVDKEKVEQAFLALEF-KGVDRLLT 290


>gi|291532674|emb|CBL05787.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Megamonas hypermegale ART12/1]
          Length = 215

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/217 (39%), Positives = 131/217 (60%), Gaps = 4/217 (1%)

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH+++       F ++ DIH   AA++F V I++V+ ++R  AK +NF IIYGIS F L
Sbjct: 1   MAHMSEDKHFIDAFCHNQDIHTATAAQVFKVPIDEVTSELRGKAKAVNFGIIYGISAFGL 60

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A  L I   EA +YI  Y     G+  ++ +      Q+G+V T+FGRR +   I S   
Sbjct: 61  AKNLHISPKEAGEYIDNYLQECSGVKNFMHEIVEKAHQDGFVTTLFGRRRYLPAIKSSNF 120

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           + R + ER A+N PIQG+AADI + AM    +++++ KL +++LLQ+HDELV EV +EEI
Sbjct: 121 NQRALAERMAMNTPIQGTAADIIKIAMNRASEAIKEAKLKSRILLQVHDELVLEVVKEEI 180

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              S+I+  +M+       +L+VPL ++I    NW E
Sbjct: 181 EKVSEILTTAMQNTA----SLKVPLIIDINYGKNWAE 213


>gi|333014002|gb|EGK33363.1| DNA polymerase I domain protein [Shigella flexneri K-227]
          Length = 223

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 122/199 (61%), Gaps = 5/199 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYK 202
           AL GDS DNIPG+PG+G K
Sbjct: 181 ALMGDSSDNIPGVPGVGEK 199


>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
          Length = 976

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 154/309 (49%), Gaps = 27/309 (8%)

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
           + I+ +  R+H   ++ +T TGRL++  PNLQN P+      KIR AF++ P   LI AD
Sbjct: 665 DRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPVLEKDRYKIRHAFVAAPGNTLIVAD 723

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796
           Y Q+ELRILAH+     + + F+   D H   A  ++      V  +KV     PQ    
Sbjct: 724 YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 783

Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                         RR AK +NFSI YG +   L+   ++   EA D +K ++     + 
Sbjct: 784 KPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDRKEVS 843

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            + +K K F  +   V T+ GR   +  +       +   ERAAINAP+QGSAAD+   A
Sbjct: 844 AWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGHVERAAINAPVQGSAADVAMCA 903

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ + ++    +L  ++LLQ+HDE++ E P E    A  I+V  M K       L+V L 
Sbjct: 904 MLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDLA 963

Query: 964 VNIKVSNNW 972
           V+ K + +W
Sbjct: 964 VDAKYAKSW 972


>gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7]
 gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7]
          Length = 2016

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 144/537 (26%), Positives = 279/537 (51%), Gaps = 41/537 (7%)

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD- 504
            K+IL  L+K  EN++ +KI  N K+D K +LH     +    D  + S +LD  ++ +  
Sbjct: 1506 KDILDGLRKVLENKNIIKIIQNGKFDAKFLLHN-NFKIENIFDTYIASKLLDKNKNMYGF 1564

Query: 505  -IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
             + +I +K+L+     + K +++S+  + + ++    +A  +S+ +L+L+  L+ ++  E
Sbjct: 1565 KLNNIVEKYLNVI---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEEIKKE 1621

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG--EKF 621
             L H+   ++   I  +  ME+ GI++D + L++ + EI  N L++E++        E  
Sbjct: 1622 NL-HIVNDIENKCILPICDMELNGIKVDLENLQKSTNEIL-NELNIEKDNLKKKLKDENI 1679

Query: 622  NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
            N++S +Q+      K    +  +  + +      D    N  ++  I ++  +R+L K+ 
Sbjct: 1680 NVNSQQQV-----LKALQKNNVRDISNKLIENTSDSNLKNFLNHEEIISLRNYRRLYKLY 1734

Query: 682  STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            S +   LP HIN +T ++HT ++   T +GR +S +PNLQ IP +    + IR  FI   
Sbjct: 1735 SAFYLKLPLHINTKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREIFIPND 1790

Query: 742  TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
                I AD+ QIEL+I A I     + + + N++D+H + A+ I   NI  ++ + R  A
Sbjct: 1791 NNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDRHIA 1850

Query: 802  KTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            K INF +IYG++   L         L +   +   +   +F  + GI+++     N V+Q
Sbjct: 1851 KAINFGLIYGMNYVNLKNYANTYYGLNMSLDQCLYFYNSFFEHYKGIYKW----HNQVKQ 1906

Query: 856  NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                     R + Y  +++ K      +   A+N P+QG+ ADI + A++ ++ +L+D  
Sbjct: 1907 --------KRALQYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLALVDLYDNLKD-- 1956

Query: 916  LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +  K++L +HDE++ EV ++    A +I+V SME +    +  +V  +V++K++ NW
Sbjct: 1957 INGKIILCVHDEIIIEVNKKFQEEALKILVQSMENSASYFLK-KVKCEVSVKIAENW 2012


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 145/582 (24%), Positives = 267/582 (45%), Gaps = 71/582 (12%)

Query: 456 FFENEHFLKIGHNIKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           +  N+    I HNIK+D K++   +G  +   + D  + S+VL+     H +  +  K++
Sbjct: 145 YLANKDLKCINHNIKFDDKMITFNWGQRIANVWWDTNIASWVLNEN-EKHGLKPLYNKYI 203

Query: 514 --SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL-------LRP---KLI 561
                  E        IP + I    ++  +I  +N   + W L       L P   +  
Sbjct: 204 LNGEGSDEDFGDLFEGIPCNYIP---IEIFSIYGANDGFKTWALYQFQKQYLNPEAKRAD 260

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL-----------LSLE 610
             KL  V+  ++ P+IDV   ME+ G++I +D  K++S + ++ +              E
Sbjct: 261 YRKLYDVFMNVEMPLIDVCMDMELRGVEIREDYAKELSVKFNEEMQEKEALCDAYVREFE 320

Query: 611 ENIYD--------LSGEKFNLSSPKQLGDILF-------TKLKFPSGAKTKTGQWKTTAQ 655
           E I +            K N +SP+Q+  +L+          K P G   K  Q      
Sbjct: 321 EYIKENATLMRLTKGTCKINYNSPQQMACLLYDIFQLKSVSRKEPRGTGDKIIQMHRNKA 380

Query: 656 DLEQINCGDNPI--IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                  G+  I  + N   +++  K+  TY D +P    ++T  VHT ++    +TGR 
Sbjct: 381 KKAGTKKGERFIEFLDNYQRYKECGKLLGTYIDKIPAVKCEKTNAVHTTFNQYGAVTGRF 440

Query: 714 ASLEP----NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           +S +     NLQNIP      + IR+ F +    KL+  D+SQIE R+LA+ +    +  
Sbjct: 441 SSSDTVTKINLQNIPSHE---KSIRKIFKARDGYKLVGGDFSQIEPRVLAYFSGDEAMQN 497

Query: 770 VFENSLDIHRMVAAEIFGVNIEK---------VSPQMRRHAKTINFSIIYGISPFRLATQ 820
            ++   D++ ++ ++++GV  E          V+P+  +H +T   S++ GI   R A  
Sbjct: 498 AYKEGKDLYAIMGSKVYGVPYEDCREFYPDGTVNPE-GKHRRTTMKSVLLGIMYERGAQA 556

Query: 821 LRIPRSEAADYIKR----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           +     ++A + ++    ++  FP + +   K +    + GYV TI GR+    ++    
Sbjct: 557 IGEQFDKSAQWAQKLIDDFYKSFPKVQQLRLKIEKTAEEYGYVTTIKGRKRRLPDMQLSN 616

Query: 877 SSIRNINE--RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                  E  R ++N+ IQGS+ADI + AMI +++     +L   M++ +HDEL+ EVPE
Sbjct: 617 HDDYRYAEAHRQSLNSVIQGSSADIMKLAMIEIYRDPRYKELDCHMIITVHDELIMEVPE 676

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +   ++++V +M++     I+L  P+ V+ +V+  W  EN
Sbjct: 677 ANVKVGAELLVSTMKRVGHSLIDL--PMSVDAEVNEYWYGEN 716


>gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1]
 gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1]
          Length = 765

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 179/362 (49%), Gaps = 42/362 (11%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE------NIYDLSGEKF---- 621
           ++ P +  V  MEI GI++D DL K++SA+  +    +EE      N YD   ++F    
Sbjct: 268 IEMPTVPAVLDMEIKGIKLDLDLNKKLSAKYRQKKAEVEEKLKIEFNKYDKEFKEFKIKH 327

Query: 622 -----------NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
                      N+SSPKQLG   +  L      + K    + T  D+  +   D P+ K 
Sbjct: 328 PDLASRLSNPINISSPKQLGIFFYDMLGLKPVDREKP---RGTGADI--LGKFDVPVAKL 382

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           ILE+R+L K+  TY D LP  ++KRT ++H  ++   T+TGR +S  PNLQNIP      
Sbjct: 383 ILEYRELDKLLGTYIDKLPTVLSKRTGKIHCTFNQYGTVTGRFSSDSPNLQNIPSHN--- 439

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           + IR+ FI      LI  DYSQ E R LAH++    + + ++N  DI+  +A+ ++ V  
Sbjct: 440 KDIRKMFIPDDGNILIGGDYSQQEPRSLAHMSGDEKMIKAYKNGKDIYATIASYVYKVPY 499

Query: 791 EK------------VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           E+            +  Q R + K +   IIYG     +A +L + + EA   I  +F  
Sbjct: 500 EECLEFNPDGTTNTIGKQRRSNLKGVVLGIIYGRGVNSIAEKLNLTKKEAQSIIDEFFTL 559

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN-APIQGSAA 897
           FP + ++ E +    R+ GYV T+ GRR    +IN P+   +  ++  + N  P   +A 
Sbjct: 560 FPKVKQFTEDSIRMARELGYVTTLSGRRRRLPDINLPRYEFKYKDKSTSDNFNPFFDTAD 619

Query: 898 DI 899
           D+
Sbjct: 620 DV 621



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 4/93 (4%)

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER  +N+ IQGSAAD+T+ AMI++H +    +L   ML+Q+HDE++ + P + +     I
Sbjct: 673 ERQCVNSRIQGSAADMTKIAMIALHNNKRLKELGYCMLIQVHDEIIGQCPIDVVKEVKPI 732

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
               +E   L  + L VP+ V+I ++  W  E+
Sbjct: 733 ----LESCMLNAVKLVVPMSVDIDITKCWYGES 761


>gi|258539932|ref|YP_003174431.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
 gi|257151608|emb|CAR90580.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
          Length = 690

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 162/299 (54%), Gaps = 17/299 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAF+A    L R    DGL  NAI  F NML  +L++ + ++ 
Sbjct: 1   MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDAA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 61  L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+  TI++ D+DL QL +  T +  TVK     E    EHV +K G
Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL++YG++EN+  N   +K  K +EN+
Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIENLYANIDAMKTSKMKENL 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVA 289
           +   + A LS++L  +  D P+TI L  +     NGP   +L  F   +    L+ ++ 
Sbjct: 237 INDKDKAYLSKQLATIDRDAPVTIDLADV---KYNGPDLAKLRDFYTKMNMNSLLKKIG 292



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/269 (34%), Positives = 152/269 (56%), Gaps = 23/269 (8%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           HR G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P D
Sbjct: 387 HRLGLHLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQVPED 446

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+    + E     S  +  L   L   L  ++   ++  ++ P+  V+++MEI GI ++
Sbjct: 447 KL----LFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLN 502

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG++LF KL  P   KTKTG + 
Sbjct: 503 AQTLKDMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG-YS 561

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-----PNHINKRTQRVHTFYSLA 706
           T+   L ++    +PI+++IL++R  +K+ STY   L     P+H      ++HT Y   
Sbjct: 562 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTYVVGLLKAQMPDH------KIHTRYLQT 614

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            T TGRL+S++PN+QNIP + D G+ IR+
Sbjct: 615 LTQTGRLSSVDPNMQNIPAR-DEGKIIRK 642


>gi|149919308|ref|ZP_01907790.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149819808|gb|EDM79232.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 315

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 98/268 (36%), Positives = 143/268 (53%), Gaps = 11/268 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q  + +FLVD ++ ++R ++A+ P  +      P+NA+  +   +  L    R     + 
Sbjct: 12  QAGDRVFLVDANNLVHRLYHASAPRFAPNDQSTPINAVIAWGQRMRAL----RLGHDPAF 67

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
              IFD P  ++R  + PDYKA R   P+ L  Q   +   +QA G+  +   G EADD+
Sbjct: 68  LLPIFDGPGDSWRRALAPDYKAKRKGQPDELRGQWEPIWHLSQALGLSPLHQPGLEADDL 127

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLV-----SPTTCL-YDTVKEEKIDIEHVIKKWGI 174
           I  Y     +    VTI+S D DLMQLV      P +    D    +++    V  K+G+
Sbjct: 128 IGAYANACVEAELEVTIVSNDSDLMQLVRGPDRGPGSVRQLDAFTGKRVGPVQVEAKFGV 187

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           PPE++  L ALTG   D +PGIPGIG K A  LL  YG+LE +L NA+ I Q+KR E IL
Sbjct: 188 PPERLAELFALTGSKGDGVPGIPGIGPKIATELLATYGSLEGVLDNAALIPQRKRSERIL 247

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHL 262
            + + ARLS +L  LR   P+ +PL+ L
Sbjct: 248 AHRDDARLSLQLTALRVGEPLPLPLDEL 275


>gi|218678024|ref|ZP_03525921.1| DNA polymerase I [Rhizobium etli CIAT 894]
          Length = 143

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/143 (60%), Positives = 112/143 (78%)

Query: 145 MQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
           MQLV+    +YD++K+++I I  V++KWG+PPEKM+ LQA+TGDS+DN+PGIPGIG KTA
Sbjct: 1   MQLVTSNVHMYDSMKDKQIGIPDVVEKWGVPPEKMIDLQAMTGDSVDNVPGIPGIGPKTA 60

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           A LL+EYG+L+ +L  A+ IKQ KRRE IL   E ARLSR+LV LRTDVP+ + L+ L+L
Sbjct: 61  AQLLEEYGDLDTLLDRAAEIKQVKRRETILANIEMARLSRELVRLRTDVPLDLDLDALVL 120

Query: 265 EDCNGPRLISFLKALEFTKLINR 287
           E  NGP+LI FLK +EFT L  R
Sbjct: 121 EPQNGPKLIGFLKTMEFTTLTRR 143


>gi|16803920|ref|NP_465405.1| hypothetical protein lmo1881 [Listeria monocytogenes EGD-e]
 gi|224500233|ref|ZP_03668582.1| hypothetical protein LmonF1_11349 [Listeria monocytogenes Finland
           1988]
 gi|224501320|ref|ZP_03669627.1| hypothetical protein LmonFR_02155 [Listeria monocytogenes FSL
           R2-561]
 gi|254827235|ref|ZP_05231922.1| 5'-3' exonuclease [Listeria monocytogenes FSL N3-165]
 gi|254831519|ref|ZP_05236174.1| hypothetical protein Lmon1_09198 [Listeria monocytogenes 10403S]
 gi|254899423|ref|ZP_05259347.1| hypothetical protein LmonJ_06404 [Listeria monocytogenes J0161]
 gi|254912438|ref|ZP_05262450.1| DNA polymerase I [Listeria monocytogenes J2818]
 gi|254936765|ref|ZP_05268462.1| 5'-3' exonuclease [Listeria monocytogenes F6900]
 gi|284802326|ref|YP_003414191.1| hypothetical protein LM5578_2082 [Listeria monocytogenes 08-5578]
 gi|284995468|ref|YP_003417236.1| hypothetical protein LM5923_2033 [Listeria monocytogenes 08-5923]
 gi|16411334|emb|CAC99959.1| lmo1881 [Listeria monocytogenes EGD-e]
 gi|258599618|gb|EEW12943.1| 5'-3' exonuclease [Listeria monocytogenes FSL N3-165]
 gi|258609361|gb|EEW21969.1| 5'-3' exonuclease [Listeria monocytogenes F6900]
 gi|284057888|gb|ADB68829.1| hypothetical protein LM5578_2082 [Listeria monocytogenes 08-5578]
 gi|284060935|gb|ADB71874.1| hypothetical protein LM5923_2033 [Listeria monocytogenes 08-5923]
 gi|293590421|gb|EFF98755.1| DNA polymerase I [Listeria monocytogenes J2818]
          Length = 290

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/268 (35%), Positives = 149/268 (55%), Gaps = 13/268 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGVQGFMRHMFAAI----RQSNP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI
Sbjct: 119 DCIGTITVQASNT-IATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ D  PG+ GIG KTA  L+QEY ++E +L N  ++K  ++ + I 
Sbjct: 178 SPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEYESIEGVLNNLDKLKPAQQTK-IQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHL 262
           E      LS+KL  + T+VP+ I L  L
Sbjct: 237 EDLAMLELSQKLARIHTEVPLEIDLPSL 264


>gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511]
 gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511]
          Length = 730

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 169/318 (53%), Gaps = 14/318 (4%)

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT--- 727
           +LE   +   K+ +   L N I+ +  RVH  ++   T T RL+S  PN+Q +P KT   
Sbjct: 353 LLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFNATGTETTRLSSNNPNMQQLPAKTSNP 412

Query: 728 ---DLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
              D    I+R F +      L+  DYS +E+RILA  A    + Q F +  D+H+  A+
Sbjct: 413 KRFDYQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETAS 472

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            ++G+ ++KV  + R+ AK +NF I YG +PF  A +  +   EA D  +RYF   P I 
Sbjct: 473 IVWGMPVDKVPAEFRKKAKAVNFGIAYGETPFSFAPKHDMSVEEAEDIFQRYFANKPNIK 532

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +I++T     ++G+V+T+ G R    +  S    I+N   R ++N  IQG+ A  T  +
Sbjct: 533 TFIDETHREALRDGFVDTLQGHRRLIRDAFSKDKQIQNGALRKSVNTKIQGTGAYCTNMS 592

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL----- 958
           +I + + ++D+ + +K++L +HD +V + P EEI   +++    ME   +  +++     
Sbjct: 593 LIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEIEIMARVCKTIMENLPIDFLSIEWKGE 652

Query: 959 --RVPLKVNIKVSNNWQE 974
             + P++ +I++  N+ +
Sbjct: 653 KTKYPIEADIEIGTNYND 670


>gi|189218501|ref|YP_001939142.1| 5'-3' exonuclease [Methylacidiphilum infernorum V4]
 gi|189185359|gb|ACD82544.1| 5'-3' exonuclease [Methylacidiphilum infernorum V4]
          Length = 296

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/287 (35%), Positives = 165/287 (57%), Gaps = 13/287 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDG+ + +R+FYA P L+ +  G P NA+ G   +L +LL + + E      AV+F
Sbjct: 2   RLVLVDGNYYAFRSFYAMPSLATRS-GEPTNALYGLTMVLRRLLSDLKPE----LGAVVF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R  +  DYKANRP+IP  L  QLP ++   +A G+  IE++G EADD+IA+YT
Sbjct: 57  DGGLPAERLALRADYKANRPEIPSALKSQLPWIKKLVKALGLCPIEVEGQEADDVIASYT 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVCL 182
             A ++G  V + ++DKDLM LV     +Y TV++++  +     + +KW + P ++  +
Sbjct: 117 KKAVEKGIDVVLATSDKDLMSLVGEHVRVY-TVEKKRFKLLGQREIEEKWSVKPSQIPDV 175

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GDS+DNIPG+ GIG KTA   + +YG+L + L+ A  I  ++  + + E  E   +
Sbjct: 176 LALIGDSVDNIPGVEGIGKKTATKWIIQYGSLFS-LLQARDIPDRRFAKLLEENKERIMI 234

Query: 243 SRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRV 288
           + K++ L+ ++ + +P+E L I+ D          +  EF KL   V
Sbjct: 235 NWKMLELKDNIELPLPIEELRIVPDYEAQE--KLFEKFEFKKLAQEV 279


>gi|308068174|ref|YP_003869779.1| 5'-3' exonuclease [Paenibacillus polymyxa E681]
 gi|305857453|gb|ADM69241.1| Probable 5'-3' exonuclease [Paenibacillus polymyxa E681]
          Length = 298

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/271 (36%), Positives = 143/271 (52%), Gaps = 13/271 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           + E  + LVDG + ++RA+YAT     + R   G+P NAI GF    W  +Q        
Sbjct: 4   RNEQSVMLVDGMALLFRAYYATAANGYIRRTKAGVPTNAIYGFIRYFWDAVQTFNP---- 59

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H    +D    TFR E +  YK NR   P+ L+PQ  L+R  T + GIP I  +GFEAD
Sbjct: 60  THVICCWDMGGTTFRGEHFAAYKGNRADAPDDLIPQFTLIREVTDSLGIPNIGAEGFEAD 119

Query: 119 DIIATYT-YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWG 173
           D I T   + ++ E   V I+S D DL+QLV   T +    K     +    E ++ + G
Sbjct: 120 DCIGTLARHYSQNEDMDVMILSGDHDLLQLVDERTRVIIMKKGHGNYMVYTPETLLTEKG 179

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++V L+ L GD+ DN PG+ GIG KTA  L+QEY ++E IL N  ++    R++ I
Sbjct: 180 LKPRQVVDLKGLMGDASDNYPGVRGIGEKTALKLVQEYDSIEGILENLDQLTPSVRKK-I 238

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
               +   LSRKL  +   VP+   L+  +L
Sbjct: 239 ESDLDMLHLSRKLAEIHCGVPVACALDSCLL 269


>gi|308803633|ref|XP_003079129.1| DNA polymerase I (ISS) [Ostreococcus tauri]
 gi|116057584|emb|CAL53787.1| DNA polymerase I (ISS) [Ostreococcus tauri]
          Length = 538

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/417 (29%), Positives = 204/417 (48%), Gaps = 38/417 (9%)

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLGDILFTKL 637
            +  M+  G+  D+       A  +  +  L+    D + G + NLSS +Q+GD+L+ +L
Sbjct: 132 ALGAMQHRGMCFDRHEANTQRAAANARVEELQNRARDVIGGVEINLSSAQQVGDVLYNQL 191

Query: 638 KFPSGAK-----TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           K P  +       K+    T+   L+Q+    +P  + +L+ R   K ++     + +  
Sbjct: 192 KLPPPSAHAMKGAKSSHLSTSVDVLQQMK---HPFAQIVLDHRGALKERA-----MCDGY 243

Query: 693 NKRT-------QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           +K T        R+HT ++  ST TGRL+S  PN+Q +   +     +R  FI+PP + L
Sbjct: 244 DKATVVNAEGHARIHTRWNNTSTATGRLSSSAPNVQQVGRGS-----MRNCFIAPPGRVL 298

Query: 746 ISADYSQIELRILAHIAKITPLYQVF-ENSLDIHRMVAAEIFGVNI---EKVSPQMRRHA 801
           ++ADYSQIELR+LAH+ +   L  +F E+S  +    A    G N+       P  R  A
Sbjct: 299 VAADYSQIELRVLAHLTEDERLISLFNEHSRTVDVFCAIWNAGRNLPIETPTEPGTRDIA 358

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K   + I+YG     LA +L   + EA  YI  +   FP + ++I +      ++G V  
Sbjct: 359 KRTAYGIVYGQHATGLAEKLNCSKFEAQGYIAAFHRAFPRVQQWISRVIQTAERDGAVII 418

Query: 862 IF-GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI---SVHKSLEDHKLA 917
            F GR     +I+S   S R+  +R A+N  IQGSA+D+ + AM+      K+ E     
Sbjct: 419 PFSGRHRPLPKIHSNVFSERSEAQRQAVNTVIQGSASDLIKTAMLRWCEATKAGEARAEL 478

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +++ QIHDEL+FE  ++ +  A ++I   ME A    + L VP  V I    +W E
Sbjct: 479 VELVAQIHDELLFECEKDYVQEAVRVIRSCMEGA----LCLSVPTPVKISTGKSWGE 531


>gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 168/331 (50%), Gaps = 35/331 (10%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           N ++ N +E  Q + IKS               RVH   ++ +T TGRL++  P+LQN P
Sbjct: 470 NTLLSNFIEPLQGNDIKSA-----------SDGRVHCSLNI-NTETGRLSARRPSLQNQP 517

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                  KIR+AF++ P K L+ ADY Q+ELR+LAH+A    +   F+   D H   A  
Sbjct: 518 ALEKDRYKIRQAFVAAPGKSLVVADYGQLELRLLAHLADCKSMKAAFKAGGDFHSRTAMN 577

Query: 785 IF-----GVNIEKV-----------SPQM-------RRHAKTINFSIIYGISPFRLATQL 821
           ++      V  E+V           +P +       RR AK +NFSI YG +   LA   
Sbjct: 578 MYPHVREAVEKERVLLEWESHGKPPAPLLKDIFGSERRKAKMLNFSIAYGKTAMGLAKDW 637

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
           ++   EA   +  ++   P +  + ++ K     +  V T+ GR  H  +INS  + +R+
Sbjct: 638 KVKVDEAKATVDLWYSDRPEVLAWQKERKQEAHTSLRVHTLLGRARHLPDINSSNALLRS 697

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ERAAIN P+QGSAAD+   AM+ ++++ +  +L  K+LLQ+HDE++ E P E    A 
Sbjct: 698 HMERAAINTPVQGSAADVAMCAMLEINRNSKLRELGWKLLLQVHDEVILEGPSESAQEAK 757

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++++ SM      +  L V L V+   + +W
Sbjct: 758 ELVIKSMMYPFNGENFLDVELVVDGDYAESW 788



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 120/306 (39%), Gaps = 64/306 (20%)

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE---- 448
           +++ +  DA H+    +A   + ++        T F      ++    GKN L  +    
Sbjct: 15  QLMREYKDAVHACDTEVAEIDVKKESPVGHGRMTCFSIYCGPSANFGNGKNRLWVDVLDG 74

Query: 449 ---ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS-- 502
              IL   +++FE+    K+ HN  +DK +L R+GI  +GF  D M ++ + DS R    
Sbjct: 75  GDGILEVFRRYFEDPSIKKVWHNYSFDKHILSRHGIHPQGFYADTMHLARLHDSARRGAK 134

Query: 503 -------------------------HDIASIAQKWLS--YTRKEILKSR-----KSSIPI 530
                                     DI  + +K +   + +  + K       K+  P+
Sbjct: 135 GGYSLEVLSADEKVMDGYLGHLTEEDDITLVGKKSMKELFGKANLKKDGSPGKIKTIPPV 194

Query: 531 DKIS-DSQVQEHAIENSN----VILQLWLLLRPKL---------IVEK--LLHVYERLDK 574
           D++  D ++++  I  S        +L++ L+ KL         + EK  +   YE+  +
Sbjct: 195 DELQRDGELRDAWIHYSTFDTVCTWRLFVSLQHKLSNTPWNVVDLKEKGSMYDFYEKYWR 254

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSA------EISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           P  +V+ QME  G+ +D D L  V        EIS +        Y       N+ S  Q
Sbjct: 255 PFGEVLVQMEADGMLVDCDHLATVEKVARAQQEISVSRFRKWAAKYCPDAAMMNVGSDAQ 314

Query: 629 LGDILF 634
           +   LF
Sbjct: 315 IRQFLF 320


>gi|281339993|gb|EFB15577.1| hypothetical protein PANDA_004677 [Ailuropoda melanoleuca]
          Length = 769

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 191/360 (53%), Gaps = 25/360 (6%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +L V  L  ++  L+ P+I +++ ME   IQ+D++ +++ SA +   L  LE+  + ++G
Sbjct: 412 RLTVYGLWQLFCTLELPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVAG 471

Query: 619 EKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
           E+F ++S  QL ++LF KLK P      +  +T   +  +T++ + +     +P+ K IL
Sbjct: 472 EQFLITSNNQLREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIIL 531

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI---PIKTDL 729
           E+R++ K KS + D L   + K +  + + ++   T+TGRL++  PN+Q I   PI+   
Sbjct: 532 EYRRVHKTKSAFVDGLLACMRKGS--ISSTWNQTGTVTGRLSARHPNIQGISKHPIQITK 589

Query: 730 GQKI------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-- 775
            Q              R  F++P     ++AD+SQIELRILAH++    L ++F+ S   
Sbjct: 590 PQNFKGVEGAMLTISPRSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERD 649

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+   + ++  GV  E V+   R   K + +S +YG    RLA  L +   EAA +++ +
Sbjct: 650 DVFSTLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGKERLAACLGVTVQEAAWFLESF 709

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
             ++  + ++++ T     Q GYV +I GRR     + +    +R   ER A+N  +QG+
Sbjct: 710 LQKYKKVKDFVQTTIAQCHQTGYVASIMGRRRPLPRVRAQDQQLRAQAERQAVNFVVQGT 769


>gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100]
          Length = 702

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 169/318 (53%), Gaps = 14/318 (4%)

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT--- 727
           +LE   +   K+ +   L N I+ +  RVH  ++   T T RL+S  PN+Q +P KT   
Sbjct: 325 LLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFNATGTETTRLSSNNPNMQQLPAKTSDP 384

Query: 728 ---DLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
              D    I+R F +      L+  DYS +E+RILA  A    + Q F +  D+H+  A+
Sbjct: 385 KRFDYQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETAS 444

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            ++G+ ++KV  + R+ AK +NF I YG +PF  A +  +   EA D  +RYF   P I 
Sbjct: 445 IVWGMPVDKVPAEFRKKAKAVNFGIAYGETPFSFAPKHDMSVEEAEDIFQRYFANKPNIK 504

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +I++T     ++G+V+T+ G R    +  S    I+N   R ++N  IQG+ A  T  +
Sbjct: 505 TFIDETHREALRDGFVDTLQGHRRLIRDAFSKDKQIQNGALRKSVNTKIQGTGAYCTNMS 564

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL----- 958
           +I + + ++D+ + +K++L +HD +V + P EE+   +++    ME   +  +++     
Sbjct: 565 LIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEVEIMARVCKTIMENLPIDFLSIEWKGE 624

Query: 959 --RVPLKVNIKVSNNWQE 974
             + P++ +I++  N+ +
Sbjct: 625 KTKYPIEADIEIGTNYND 642


>gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
 gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
          Length = 1178

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 150/301 (49%), Gaps = 27/301 (8%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            R+H   ++ +T TGRL++  PNLQN P       KIR+AF++ P   LI ADY Q+ELRI
Sbjct: 875  RIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRI 933

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ------------ 796
            LAH+     +   F+   D H   A  ++      V+ +KV     PQ            
Sbjct: 934  LAHLTNCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVHEKKVLLEWHPQPGQEKPPVPLLK 993

Query: 797  -----MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
                  RR AK +NFSI YG +   L+   ++   EA D +K ++     +  + +  K 
Sbjct: 994  DAFGAERRKAKMLNFSIAYGKTALGLSRDWKVSVKEARDTLKLWYGDRKEVLAWQKSQKK 1053

Query: 852  FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
              R+   V T+ GR  H+  +       R   ERAAINAP+QGSAAD+   AM+ + ++ 
Sbjct: 1054 LAREKCEVYTLLGRSRHFPNLTQFGPGQRGHIERAAINAPVQGSAADVAMCAMLEIERNA 1113

Query: 912  EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
               +L  ++LLQ+HDE++ E P E    A  I+V  M K       L+V L V+ K + +
Sbjct: 1114 RLKELGWRLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFHGTNILKVDLAVDAKCAKS 1173

Query: 972  W 972
            W
Sbjct: 1174 W 1174



 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 49/240 (20%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---- 501
           + +L     FFE+    K+ HN  +D  V+  YGI + GF  D M ++ + DS R     
Sbjct: 486 RGVLMEFAPFFEDPSIKKVWHNYSFDNHVIENYGIKVAGFRADTMHLARLWDSSRKIDGG 545

Query: 502 ----------------SHDI---ASIAQKWLSYTRKEILK--SRKSSIPIDKISDSQVQE 540
                             D+     I+ K + + RK++ K  S    + ID + + Q ++
Sbjct: 546 YSLEGLTNDRRVMDTVPEDLPKPGKISMKTI-FGRKKVRKDGSEGKVVSIDPVKELQRED 604

Query: 541 HAIE------NSNVILQLWLLLRPKLIVEK----------LLHVYERLDKPMIDVVSQME 584
             +       +S   L+L+  L+ KL   +          +   YE+   P   ++ +ME
Sbjct: 605 RELWICYSSLDSMSTLRLYESLKRKLETRRWVLDGCPRGTMYDFYEQYWCPFGALLVKME 664

Query: 585 ITGIQIDQDLLKQVS-AEISKNLLSLEE-----NIYDLSGEKFNLSSPKQLGDILFTKLK 638
             G+ +D+  L ++  A I++  L+ ++     + Y    +  N++S  Q+  +LF  ++
Sbjct: 665 TEGMLVDRGYLSEIEKAAIAERELAADKFRKWASKYCPDAKYMNVNSDTQIRQLLFGGIE 724


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 140/539 (25%), Positives = 274/539 (50%), Gaps = 38/539 (7%)

Query: 444  TLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
             +TKE IL+ L++  +NE  +KI  N K+D   L      +    D  + S +LD  ++ 
Sbjct: 1347 NITKESILTGLREILKNEKVVKIIQNGKFDAKFLMHNNFQVDNIFDTYIASKLLDKNKNM 1406

Query: 503  HD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +   + +I +K+L+ T   + K +++S+  + + ++    +A  +S+ +L+L+  L+ ++
Sbjct: 1407 YGFKLNNIVEKYLNVT---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEI 1463

Query: 561  IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI-YDLSGE 619
              E +  V +  +K ++ +   ME+ GI +D + LK+ + EI   L +    +  +L  E
Sbjct: 1464 CKENMETVNDIENKCILPICD-MELNGITVDLESLKKSTNEILSELNTETSKLKAELKDE 1522

Query: 620  KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            + N++S +Q+   L       +  +  + +      D    N  ++  +  +  +R+L K
Sbjct: 1523 EININSQQQVLKALQN-----NNVRDISNKLIENTSDSNLKNFLNHKEVVLLRNYRRLYK 1577

Query: 680  IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
            + S +   LP HINK+T ++HT ++   T +GR +S +PNLQ IP +    + IR  FI 
Sbjct: 1578 LYSAFYLKLPQHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREIFIP 1633

Query: 740  PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                  I AD+ QIEL+I A I     + + + N++D+H + A+ I    I  V+ + R 
Sbjct: 1634 QKDNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKPIADVNKEDRH 1693

Query: 800  HAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
             AK INF +IYG++   L         L +   +   +   +F  + GI+ +  + K   
Sbjct: 1694 IAKAINFGLIYGMNYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHYKGIYRWHNQIKQI- 1752

Query: 854  RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                       R + Y  +++ K      +   A+N P+QG+ ADI + +++ ++K+L+ 
Sbjct: 1753 -----------RGLEYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLSLVELYKNLK- 1800

Query: 914  HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              +  K++L +HDE++ EV ++    A +I+V SME +    +  +V  +V++K++ NW
Sbjct: 1801 -PIHGKIILCVHDEIIIEVDKKYQEDALKILVESMENSASFFLK-KVKCEVSVKIAQNW 1857


>gi|254448493|ref|ZP_05061953.1| exodeoxyribonuclease IX [gamma proteobacterium HTCC5015]
 gi|198261876|gb|EDY86161.1| exodeoxyribonuclease IX [gamma proteobacterium HTCC5015]
          Length = 382

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 151/281 (53%), Gaps = 11/281 (3%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVD S +++R+++  P      +G P NA+ GF + + +LL + +     SH    FD  
Sbjct: 6   LVDSSIYVFRSWHVMPDTLTDAEGHPANAVYGFADFVLQLLHSEQP----SHIGFAFDLC 61

Query: 69  -AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
            A  +R EI   YKANRP  P  L  Q    R   QA G+       FEADDII T++  
Sbjct: 62  HAGNWRREIDAQYKANRPPPPAELKRQFAHCRELLQASGLACFGSDRFEADDIIGTFSRS 121

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
             ++GF  TII+ DKDL QL+      ++  + +++D   + K+WGI PE++  L AL G
Sbjct: 122 LREQGFVSTIITGDKDLTQLIGEGDEWWEVARNKRLDYRGIHKQWGIYPEQVADLLALVG 181

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENIL-----INASRIKQKKRRENILE-YAETAR 241
           D  DNI G+PG+G KTAA LL+++G+++ +L     I   + +  KR EN++  + +T R
Sbjct: 182 DKSDNIAGVPGVGVKTAANLLKKFGDIDGVLNNIDAIGEMKFRSAKRIENLVRMHQDTIR 241

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
           L++ L ++  D  I      L+    +   L    + L+F+
Sbjct: 242 LAKLLTVIPDDPTINTHASALVPCQWDESHLGDLFQRLDFS 282


>gi|319651265|ref|ZP_08005395.1| hypothetical protein HMPREF1013_02007 [Bacillus sp. 2_A_57_CT2]
 gi|317397045|gb|EFV77753.1| hypothetical protein HMPREF1013_02007 [Bacillus sp. 2_A_57_CT2]
          Length = 296

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 150/266 (56%), Gaps = 13/266 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +K+  L LVDG + ++RA++AT +  +      G+P N + GF       + +       
Sbjct: 3   EKKPSLLLVDGMALLFRAYFATAMSGQFMINSKGIPTNGVYGFVKHFLTAVSSFS----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV +D  + TFR E++  YKANRP+ P  L+PQ  LV+   +AF +P I ++G+EAD
Sbjct: 59  THVAVCWDMGSKTFRTEMFDAYKANRPEAPIELVPQFDLVKEVVEAFDVPNIGLEGYEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW----GI 174
           D I T    A +E   V I++ D+D++QL+     +    K     + H  + +    GI
Sbjct: 119 DCIGTIARKASQEA-EVLILTGDQDILQLLDDNISVILLQKGYGNYLVHTTETFYEEKGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++M+ L+A  GD+ DN PG+ GIG KTA  LLQ++ ++E +L N  ++  K +R  I 
Sbjct: 178 TPKQMIDLKAFMGDTSDNYPGVKGIGEKTALKLLQQFEHIEGVLENLEQLT-KGQRAKIE 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLE 260
           +  E   LSR+L  ++ DVP+  PL+
Sbjct: 237 QDLEMLHLSRQLAEIKCDVPVECPLD 262


>gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group]
          Length = 1033

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 154/309 (49%), Gaps = 27/309 (8%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            + I+ +  R+H   ++ +T TGRL++  PNLQN P       KIR+AF++ P   LI AD
Sbjct: 722  DRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNTLIVAD 780

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796
            Y Q+ELRILAH+     + + F+   D H   A  ++      V  +KV     PQ    
Sbjct: 781  YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQE 840

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+   ++   EA D +K ++     + 
Sbjct: 841  KPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVEVREARDTLKLWYRDRKEVS 900

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             + +K K F  +   V T+ GR   +  +       +   ERAAINAP+QGSAAD+   A
Sbjct: 901  AWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGHVERAAINAPVQGSAADVAMCA 960

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ + ++    +L  ++LLQ+HDE++ E P E    A  I+V  M K       L+V L 
Sbjct: 961  MLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDLA 1020

Query: 964  VNIKVSNNW 972
            V+ K + +W
Sbjct: 1021 VDAKYAKSW 1029



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 49/229 (21%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS--- 502
           +++L     FFE+    K+ HN  +D  V+   GI + GF  D M ++ + DS R +   
Sbjct: 337 RDVLMEFAPFFEDPSIKKVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRTDGG 396

Query: 503 -----------------HDIASIAQKWLS--YTRKEILK--SRKSSIPIDKISDSQVQEH 541
                             DI    +  +   + RK++ K  S   +I I+ +   Q ++ 
Sbjct: 397 YSLEGLTNDHRVMDAVVKDIPKTGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDR 456

Query: 542 AIE------NSNVILQLWLLLRPKLIVEK----------LLHVYERLDKPMIDVVSQMEI 585
            +       +S   L+L+  L+ KL  ++          +   YE   +P   ++ +ME 
Sbjct: 457 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYWRPFGALLVKMET 516

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            G+ +D+  L    +EI K  ++  E    L+ +KF   + K   D  +
Sbjct: 517 EGVLVDRAYL----SEIEKAAVTERE----LAADKFRKWASKHCPDAKY 557


>gi|315282899|ref|ZP_07871204.1| 5'-3' exonuclease [Listeria marthii FSL S4-120]
 gi|313613454|gb|EFR87293.1| 5'-3' exonuclease [Listeria marthii FSL S4-120]
          Length = 290

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 148/263 (56%), Gaps = 13/263 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L +VDG + ++RAFYAT +  +     +G+P N + GF   ++  +    ++S  +H  +
Sbjct: 8   LLVVDGMALLFRAFYATAVSKQFMFNQNGIPTNGVQGFMRHMFAAI----RQSNPTHTLI 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEADD I T
Sbjct: 64  CWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEADDCIGT 123

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            T  A     A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI P + 
Sbjct: 124 ITVQASNT-IATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGITPGQF 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++ + I E    
Sbjct: 183 VDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQTK-IQEDLAM 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262
             LS+KL  + T+VP+ I L  L
Sbjct: 242 LELSQKLARIHTEVPLEIDLPSL 264


>gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group]
          Length = 1033

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 153/309 (49%), Gaps = 27/309 (8%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            + I+ +  R+H   ++ +T TGRL++  PNLQN P       KIR AF++ P   LI AD
Sbjct: 722  DRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRHAFVAAPGNTLIVAD 780

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796
            Y Q+ELRILAH+     + + F+   D H   A  ++      V  +KV     PQ    
Sbjct: 781  YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 840

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+   ++   EA D +K ++     + 
Sbjct: 841  KPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDRKEVS 900

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             + +K K F  +   V T+ GR   +  +       +   ERAAINAP+QGSAAD+   A
Sbjct: 901  AWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGHVERAAINAPVQGSAADVAMCA 960

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ + ++    +L  ++LLQ+HDE++ E P E    A  I+V  M K       L+V L 
Sbjct: 961  MLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDLA 1020

Query: 964  VNIKVSNNW 972
            V+ K + +W
Sbjct: 1021 VDAKYAKSW 1029


>gi|253577228|ref|ZP_04854547.1| 5'-3' exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843342|gb|EES71371.1| 5'-3' exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 295

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 154/288 (53%), Gaps = 14/288 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N + LVDG + ++RA+YA   T  + R   G+P NA+ GF    W  +Q        +H
Sbjct: 8   KNTILLVDGMALMFRAYYASAATGYIRRTKAGVPTNAVYGFMRYFWDAVQKFGP----TH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  +D  + TFR E + DYK NR   PE L+PQ  ++R    + GIP I   G+EADD 
Sbjct: 64  IACCWDLGSKTFRTEQFADYKGNRADAPEGLIPQFSMIREVMDSLGIPNISSPGYEADDC 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWGIPP 176
           I T      +E   V +++ D D++QLVS  T +    K     +    E ++++  + P
Sbjct: 124 IGTLAARFGQE-MDVLVLTGDHDMLQLVSERTSVIIMKKGHGNYMVYTPEALMEEKQLRP 182

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+AL GD+ DN PG+ GIG KTA  L+QE+G++E IL N  ++  K  R  I   
Sbjct: 183 EQIVDLKALMGDTSDNYPGVRGIGEKTALKLVQEHGSVEGILANLDQLS-KSVRAKIEAD 241

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +   LSR+L  +R D+ +   +E    E  N  ++IS  + LE   +
Sbjct: 242 LDMLHLSRQLAKIRCDIELECDVETCRFE-LNPAQVISKFEELEMASI 288


>gi|289435227|ref|YP_003465099.1| 5-3 exonuclease family protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171471|emb|CBH28015.1| 5-3 exonuclease family protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313632694|gb|EFR99668.1| 5'-3' exonuclease [Listeria seeligeri FSL N1-067]
 gi|313637244|gb|EFS02752.1| 5'-3' exonuclease [Listeria seeligeri FSL S4-171]
          Length = 290

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 151/267 (56%), Gaps = 14/267 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +EN L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  +
Sbjct: 5   REN-LLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGVQGFMRHMFAAI----RQSNPT 59

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEADD
Sbjct: 60  HTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVATGFGFVNLGVPGFEADD 119

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            I T T +      + T++S DKDL+QL++PT  ++   K     ++ +     ++ GI 
Sbjct: 120 CIGTIT-VQAASSISTTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYNEATFFEEMGIT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++AL GD+ D  PG+ GIG KTA  L+QEY ++E +L N  ++K  ++ + I E
Sbjct: 179 PRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEYQSIEGVLANLDKLKPAQQTK-IQE 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL 262
                 LS+KL  + T+VP+ + L+ L
Sbjct: 238 DLAMLELSQKLAKIHTEVPLEMNLDSL 264


>gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K]
 gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K]
          Length = 1072

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 162/308 (52%), Gaps = 14/308 (4%)

Query: 681  KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT------DLGQKIR 734
            ++++   L N INK+ + +H  +S   T T RL+S  PNLQN+P  T      D    I+
Sbjct: 706  RNSFTKKLLNMINKQKRTLHGSFSETGTETSRLSSSNPNLQNLPAHTSDVNKFDYKHPIK 765

Query: 735  RAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
            R+F+S      L+ +DYS +E+RI+    K   + Q F N  DIH+  A+ ++   +E+V
Sbjct: 766  RSFVSRFENGVLLGSDYSALEMRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEV 825

Query: 794  SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
            + + R+  K +NF + +G SPF  A +  +  SEA +  ++YF   P +   I+    FV
Sbjct: 826  TKEERQATKAVNFGLAFGESPFSFAGKNNMEVSEAEEIFEKYFQTKPSVKTSIDNVHEFV 885

Query: 854  RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
            +Q GYV+T+ G R       S    I+N   R + N  IQGS + +T  ++  +   ++ 
Sbjct: 886  QQYGYVDTMHGHRRFIRSAQSTDKKIKNEGLRQSFNTIIQGSGSFLTNMSLTYLDDFIQS 945

Query: 914  HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME-------KACLPKINLRVPLKVNI 966
              L +K++  +HD ++ + P EE    +++ +H ME       KA +    ++ P++ ++
Sbjct: 946  RNLKSKVIATVHDSILIDCPPEEAKIMAKVTIHIMENLPFDFLKAEIDGKEVQYPIEADM 1005

Query: 967  KVSNNWQE 974
            ++  N+ +
Sbjct: 1006 EIGLNYND 1013


>gi|156552095|ref|XP_001605062.1| PREDICTED: similar to Mus308 [Nasonia vitripennis]
          Length = 2242

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 174/335 (51%), Gaps = 19/335 (5%)

Query: 566  LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
            L  Y+ ++ P I +++ ME+ G  I+ + L++++  I  +L  +EE  +  +G KFN  S
Sbjct: 1897 LSAYKDIEMPTILILANMELRGFGINVESLQELATVIKNDLGRIEEEAFRAAGRKFNFYS 1956

Query: 626  PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
             K++  +L            K G+  T    L+     +NPI   +  WR+L+ +++   
Sbjct: 1957 SKEVSQVL---------GLNKRGRACTNKNALKSC---ENPISNLVTLWRKLTTVQTKIV 2004

Query: 686  DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--IKTDLGQ---KIRRAFISP 740
              L   + ++  R+H    +  T+TGR++  EPNLQ IP   K+D+      +R AF+  
Sbjct: 2005 FPLL-QLERKNNRIHG-NCITYTVTGRVSMHEPNLQTIPRDFKSDISGCILSVRMAFVPA 2062

Query: 741  PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
                ++SAD+ Q+ELRILAH ++   L ++     DI + +AA +     E+V   MR+ 
Sbjct: 2063 SGNIMLSADFCQLELRILAHFSQDPVLCKLLHGKGDIFKSIAARLNKTTEEQVDDDMRQR 2122

Query: 801  AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            AK + +++IYG+    LA  L    SEA DY++ +   + GI  ++       R  G+V 
Sbjct: 2123 AKQLCYAMIYGMGAKSLAETLSATESEAKDYLEAFMGTYKGIRVWLTGVCEQARVEGFVS 2182

Query: 861  TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
            TI  RR     INS  S++++  ER A+N  +QGS
Sbjct: 2183 TIANRRRILPGINSKISAVKSQAERQAVNTKVQGS 2217


>gi|315648998|ref|ZP_07902092.1| 5-3 exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus vortex V453]
 gi|315275679|gb|EFU39033.1| 5-3 exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus vortex V453]
          Length = 296

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 157/288 (54%), Gaps = 20/288 (6%)

Query: 7   LFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG + ++RA+YAT     + R   G+P NAI GF   +W  +   +     +H A 
Sbjct: 9   LLLVDGMALLFRAYYATASSGYIRRTKAGIPTNAIYGFLRYMWDAIDKFQP----THVAC 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E +  YK NRP+ P+ L+PQ  LVR  T+  GIP + + G+EADD I T
Sbjct: 65  CWDMGSKTFRTEQFASYKGNRPEAPDDLIPQFSLVRDVTECLGIPNLGVVGYEADDCIGT 124

Query: 124 YTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPP 176
              +A +  +   V I+S D DL+QLVS +T +   +K+   +  H     +  + G+ P
Sbjct: 125 ---LARRYSDHMNVMILSGDHDLLQLVSDSTSVI-IMKKGHGNYMHYTPETLYAEKGLTP 180

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GD+ DN PG+ GIG KTA  L+QEY ++E IL N   +  K  R  I   
Sbjct: 181 RQVIDVKGLMGDTSDNYPGVRGIGEKTALKLIQEYESVEGILENLESLA-KGVRTKIEAD 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E   LSR L  +  +VP+   L+ L L + +  R ++ L+ LE   L
Sbjct: 240 LEMLHLSRALAEIHCEVPMECELD-LCLLNVDHERALTKLEELEMKSL 286


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 162/306 (52%), Gaps = 35/306 (11%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVH   +L +T TGRL+S +PNLQN P       KIR AF++P  KKLI ADYSQ+ELR+
Sbjct: 550 RVHCSLNL-NTDTGRLSSRKPNLQNQPALEKDRYKIRDAFVAPKGKKLIVADYSQLELRL 608

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV----------------SPQM---- 797
           LAHI +   + + F    D H   A  ++  N+ K                 SP +    
Sbjct: 609 LAHITQCKAMIEAFRAGGDFHSRTAVAMYD-NVAKAVESGEVLLEWDYTKGTSPPVPLLK 667

Query: 798 ------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
                 R++AK +NFSI YG +PF L+    + R EA+  + +++     + ++ E+  +
Sbjct: 668 EKFATERKNAKILNFSIAYGKTPFGLSKDFGVRRVEASKILDKWYGGRQEVRKWQEQAID 727

Query: 852 FVRQNGYVETIFGR-RIHYDEINSPKSSI----RNINERAAINAPIQGSAADITRRAMIS 906
             R+ GY  T+ GR R   D +    S I    ++  ERAA+N PIQG+AAD+  +AM+ 
Sbjct: 728 TARKFGYTRTLMGRYRRLPDAMLKSNSFISRKAQSHAERAAVNTPIQGAAADLVMQAMLR 787

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           ++K+     +  +M+ QIHDE++ E PE+    A  I+   ME     +  L V L+V+ 
Sbjct: 788 INKNSRLRSMGWEMVCQIHDEIILEGPEDNAEEAKAIVKDLMENPF--EHPLSVDLQVDA 845

Query: 967 KVSNNW 972
           K+  +W
Sbjct: 846 KIDRSW 851



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 45/231 (19%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG---RSSHDI 505
           L Y + F E+    K+ HN  +D+ VL  +GI+++G   D M M+ + ++    R  + +
Sbjct: 193 LEYFRAFLEDSSLKKVWHNYSFDRHVLFNHGINVQGLHGDTMHMARLWNTARFKRGGYSL 252

Query: 506 ASIAQKWLSYTRKEIL------KSRKSSIP-----IDKISDSQVQE-------------- 540
            ++    L   +K +       K RK   P     I  ++D Q                 
Sbjct: 253 QALTSDLLHQRKKNMKELFGTPKPRKDGSPGKEKTIPNVADLQRCADFRSRWIRYSVFDA 312

Query: 541 ------HAIENSNVILQLWL----LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 H +    + L  W+    +L  + +   +   Y +   P  + ++ +E  G+ +
Sbjct: 313 ESTWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFYLKYLVPFGECLTDIERKGMNV 372

Query: 591 DQDLLKQVSAEISKNLLSLEENI------YDLSGEKFNLSSPKQLGDILFT 635
           D+  L++V      +   LE+++      Y    ++ N+ S  Q   +LF 
Sbjct: 373 DRAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNVYSAAQKQQLLFA 423


>gi|217963967|ref|YP_002349645.1| 5-3 exonuclease family protein [Listeria monocytogenes HCC23]
 gi|217333237|gb|ACK39031.1| 5-3 exonuclease family protein [Listeria monocytogenes HCC23]
 gi|307571463|emb|CAR84642.1| 5-3 exonuclease family protein [Listeria monocytogenes L99]
          Length = 290

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 149/268 (55%), Gaps = 13/268 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAI----RQSNP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI
Sbjct: 119 DCIGTITVQASNT-IATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++ + I 
Sbjct: 178 SPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQTK-IQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHL 262
           E      LS+KL  + T+VP+ I L  L
Sbjct: 237 EDLAMLELSQKLARIHTEVPLEIDLPSL 264


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 155/311 (49%), Gaps = 35/311 (11%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQ-----------NIPIKTDLGQKIRRAFISPPTKKLI 746
           RVH   ++ +T TGRL++  PNLQ           N P       KIR+AFI+PP K LI
Sbjct: 477 RVHCSLNI-NTETGRLSARRPNLQASLQRSSFLNINQPALEKDRYKIRKAFIAPPGKSLI 535

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV-------- 793
            ADY Q+ELRILAH++    + + FE   D H   A  ++      V   +V        
Sbjct: 536 VADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTALNMYPHVRKAVETGEVLLEWSGEG 595

Query: 794 -SP---------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            SP           RR AK +NFSI YG +   L+   ++   EA   +  +++    + 
Sbjct: 596 KSPVPLLKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVK 655

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           E+   T    R    V T+ GR  H  +IN+  S +R   ERAAIN P+QGSAAD+   A
Sbjct: 656 EWQTDTIERARITKRVHTLLGRSRHLPDINTSISVLRGHLERAAINTPVQGSAADVAMCA 715

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ + ++    +L  K++LQ+HDE++ E P E +  A +I+V  M      +  L+V L 
Sbjct: 716 MLEIDRNSRLRELGWKLILQVHDEVILEGPSESVEEAQEIVVKCMSFPFEGENFLKVNLD 775

Query: 964 VNIKVSNNWQE 974
           V+   + +W E
Sbjct: 776 VDADHAKSWYE 786



 Score = 44.7 bits (104), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502
           IL   + +FEN    KI HN  +DK +L  YGI   GF  D M ++ + DS R  
Sbjct: 81  ILDVFRPYFENAEIKKIWHNYSFDKHILGNYGIKAAGFYADTMHLARLWDSARGG 135


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 155/311 (49%), Gaps = 35/311 (11%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQ-----------NIPIKTDLGQKIRRAFISPPTKKLI 746
           RVH   ++ +T TGRL++  PNLQ           N P       KIR+AFI+PP K LI
Sbjct: 477 RVHCSLNI-NTETGRLSARRPNLQASLQRSSFLNINQPALEKDRYKIRKAFIAPPGKSLI 535

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV-------- 793
            ADY Q+ELRILAH++    + + FE   D H   A  ++      V   +V        
Sbjct: 536 VADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRTALNMYPHVRKAVETGEVLLEWSGEG 595

Query: 794 -SP---------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            SP           RR AK +NFSI YG +   L+   ++   EA   +  +++    + 
Sbjct: 596 KSPVPLLKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVK 655

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           E+   T    R    V T+ GR  H  +IN+  S +R   ERAAIN P+QGSAAD+   A
Sbjct: 656 EWQTDTIERARITKRVHTLLGRSRHLPDINTSISVLRGHLERAAINTPVQGSAADVAMCA 715

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ + ++    +L  K++LQ+HDE++ E P E +  A +I+V  M      +  L+V L 
Sbjct: 716 MLEIDRNSRLRELGWKLILQVHDEVILEGPSESVEEAQEIVVKCMSFPFEGENFLKVNLD 775

Query: 964 VNIKVSNNWQE 974
           V+   + +W E
Sbjct: 776 VDADHAKSWYE 786



 Score = 44.7 bits (104), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502
           IL   + +FEN    KI HN  +DK +L  YGI   GF  D M ++ + DS R  
Sbjct: 81  ILDVFRPYFENAEIKKIWHNYSFDKHILGNYGIKAAGFYADTMHLARLWDSARGG 135


>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
 gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
 gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
          Length = 1049

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 157/309 (50%), Gaps = 29/309 (9%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            ++++ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AF++ P   L+ AD
Sbjct: 740  SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVAD 798

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796
            Y Q+ELRILAH+     + + F+   D H   A  ++         G  I +  P+    
Sbjct: 799  YGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGED 858

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+   ++   EA + +  +++    + 
Sbjct: 859  KPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVR 918

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            ++ E  K    ++GYV T+ GR   +    S   + RN  +RAAIN P+QGSAAD+   A
Sbjct: 919  KWQEMRKKEAIEDGYVLTLLGRSRRFPA--SKSRAQRNHIQRAAINTPVQGSAADVAMCA 976

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ +  + +  KL  ++LLQIHDE++ E P E    A  I+V  M K    +  L V L 
Sbjct: 977  MLEISINQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLS 1036

Query: 964  VNIKVSNNW 972
            V+ K + NW
Sbjct: 1037 VDAKCAQNW 1045



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           D  G+N   +E+L+  K +FE+    K+ HN  +D  ++  +GI + GF  D M M+ + 
Sbjct: 335 DVLGENG--REVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLW 392

Query: 497 DSGR 500
           DS R
Sbjct: 393 DSAR 396


>gi|46908113|ref|YP_014502.1| 5'-3' exonuclease family protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|226224484|ref|YP_002758591.1| 5'-3' exonuclease [Listeria monocytogenes Clip81459]
 gi|254826077|ref|ZP_05231078.1| 5'-3' exonuclease [Listeria monocytogenes FSL J1-194]
 gi|254852784|ref|ZP_05242132.1| 5'-3' exonuclease [Listeria monocytogenes FSL R2-503]
 gi|254931949|ref|ZP_05265308.1| 5'-3' exonuclease [Listeria monocytogenes HPB2262]
 gi|254992231|ref|ZP_05274421.1| 5'-3' exonuclease [Listeria monocytogenes FSL J2-064]
 gi|290892993|ref|ZP_06555982.1| 5'-3' exonuclease [Listeria monocytogenes FSL J2-071]
 gi|300763809|ref|ZP_07073806.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|46881383|gb|AAT04679.1| 5'-3' exonuclease family protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|225876946|emb|CAS05655.1| Putative 5'-3' exonuclease [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258606111|gb|EEW18719.1| 5'-3' exonuclease [Listeria monocytogenes FSL R2-503]
 gi|290557353|gb|EFD90878.1| 5'-3' exonuclease [Listeria monocytogenes FSL J2-071]
 gi|293583501|gb|EFF95533.1| 5'-3' exonuclease [Listeria monocytogenes HPB2262]
 gi|293595318|gb|EFG03079.1| 5'-3' exonuclease [Listeria monocytogenes FSL J1-194]
 gi|300515545|gb|EFK42595.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|328466231|gb|EGF37388.1| 5'-3' exonuclease [Listeria monocytogenes 1816]
 gi|328473597|gb|EGF44434.1| 5'-3' exonuclease [Listeria monocytogenes 220]
 gi|332312322|gb|EGJ25417.1| 5'3'-exonuclease [Listeria monocytogenes str. Scott A]
          Length = 290

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 149/268 (55%), Gaps = 13/268 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAI----RQSNP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI
Sbjct: 119 DCIGTITVQASNT-IATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++ + I 
Sbjct: 178 SPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQTK-IQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHL 262
           E      LS+KL  + T+VP+ I L  L
Sbjct: 237 EDLAMLELSQKLARIHTEVPLEIDLPSL 264


>gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA
            polymerase [Arabidopsis thaliana]
 gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
          Length = 1050

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 157/309 (50%), Gaps = 29/309 (9%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            ++++ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AF++ P   L+ AD
Sbjct: 741  SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVAD 799

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796
            Y Q+ELRILAH+     + + F+   D H   A  ++         G  I +  P+    
Sbjct: 800  YGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGED 859

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+   ++   EA + +  +++    + 
Sbjct: 860  KPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVR 919

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            ++ E  K    ++GYV T+ GR   +    S   + RN  +RAAIN P+QGSAAD+   A
Sbjct: 920  KWQEMRKKEAIEDGYVLTLLGRSRRFPA--SKSRAQRNHIQRAAINTPVQGSAADVAMCA 977

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ +  + +  KL  ++LLQIHDE++ E P E    A  I+V  M K    +  L V L 
Sbjct: 978  MLEISINQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLS 1037

Query: 964  VNIKVSNNW 972
            V+ K + NW
Sbjct: 1038 VDAKCAQNW 1046



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           D  G+N   +E+L+  K +FE+    K+ HN  +D  ++  +GI + GF  D M M+ + 
Sbjct: 336 DVLGENG--REVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLW 393

Query: 497 DSGR 500
           DS R
Sbjct: 394 DSAR 397


>gi|255071395|ref|XP_002507779.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
 gi|226523054|gb|ACO69037.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
          Length = 1974

 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 224/499 (44%), Gaps = 95/499 (19%)

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK--- 620
            KL  V    +  ++  ++QME TG+  D  +L +   + ++ L  +E     L  ++   
Sbjct: 1475 KLGDVLRDAEMRLVPALAQMEATGVAFDPSVLCRQMRQANRRLREIEREADALVSKQVPG 1534

Query: 621  ----FNLSSPKQLGDILFTKLKFPS--GAKTKTG----QWKTTAQDLEQI-NCGDNPIIK 669
                F+L+S   +  +LF  LK P    A  + G    + +  A+ L  + +  D P + 
Sbjct: 1535 AEPAFSLASSADVARVLFENLKLPPPPCAVVQCGNGRRRLRANAEVLAALKDQSDLPAL- 1593

Query: 670  NILEWRQLSKIKSTYADSL------------PNHINKRTQRVHTFYSLASTMTGRLASLE 717
             +LE R LS+  +  AD +             N    +  R+       +T TGRLA  E
Sbjct: 1594 -VLEHRTLSRCVA-MADEMVELALGGARRDEGNSSRGKITRLRGAIHQTNTETGRLAMEE 1651

Query: 718  PNLQNIP---------------------------------IKTDLGQK----IRRAFISP 740
            PNLQ +P                                   T++G +    +R AF++P
Sbjct: 1652 PNLQTVPKPRTFRMADAYDGRPGIIAPEGSAKAHKTREPSPGTEVGSEETLSVRNAFVAP 1711

Query: 741  PTKKLISADYSQIELRILAHIAKITPLYQVFEN--------SLDIHRMVAAEIFGVNIEK 792
            P   L+SADY Q+ELR++AH++    L + F +          D  R +A+   GV + K
Sbjct: 1712 PGAVLLSADYRQLELRVMAHMSGDEGLVRAFNHEGAPPHHPDADPFRFLASRWRGVEVGK 1771

Query: 793  VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
            VS   R  AK + + ++YG  P R A ++ +  SEA   I+ +    PG+  + +K    
Sbjct: 1772 VSDADRAVAKQLAYGVLYGSGPARFAQEMGVTESEARVQIEAFKASVPGVERWRKKLIET 1831

Query: 853  VRQNG--YVETIFGRRIHYDEINSPKSSI---------------RNINERAAINAPIQGS 895
              +     VETI GRR     + +P +++               R+ +ER A+N   QGS
Sbjct: 1832 ASRASPPSVETICGRRRILSSL-APDAALTATGCEDAKRRFRLDRSADERRAVNTACQGS 1890

Query: 896  AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
            AAD+ +RAMI+V   L D  LAT  +LQIHDEL+FEV    +  A++ +   ME+A   +
Sbjct: 1891 AADVVKRAMIAVFDEL-DPSLATP-VLQIHDELLFEVDASRVVEAARAVRAIMERAG-DE 1947

Query: 956  INLRVPLKVNIKVSNNWQE 974
                VPL V +    NW +
Sbjct: 1948 FGFTVPLPVKVSAGANWGD 1966


>gi|317130034|ref|YP_004096316.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474982|gb|ADU31585.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Bacillus
           cellulosilyticus DSM 2522]
          Length = 287

 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 103/287 (35%), Positives = 152/287 (52%), Gaps = 18/287 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N + LVDG + ++RAFYAT +         G+P NAI GF   L+  +   +     +H
Sbjct: 2   KNKVMLVDGMALLFRAFYATAMSGYFMVNSKGVPTNAIHGFIKHLFTAVNTYK----PTH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               +D  + TFR E++PDYK NR + P  L+PQ  LV+    A  IP + + GFEADD 
Sbjct: 58  VICCWDMGSKTFRTELFPDYKGNRGEPPVELIPQFDLVKDVVDALDIPNVGLAGFEADDC 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGI 174
           I T     ++E   V I++ D+D++QL+     +      Y      K D+   +++ GI
Sbjct: 118 IGTLAQQFKEES-EVLILTGDQDILQLIDENVHVVLLKKGYGNYALYKEDV--FLEEKGI 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +MV L+AL GDS DN PG+ GIG KTA  LL++YG +E IL N   +  K +R  I 
Sbjct: 175 TPPQMVDLKALMGDSSDNYPGVKGIGEKTALQLLKKYGTIEGILENLPSL-TKAQRNKIE 233

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
              +   LSRKL  +  +V ++ PL      + N  ++I     LEF
Sbjct: 234 TDLDMLHLSRKLAKIHCEVEVSCPLNTAAF-NVNRTKMIEKFTELEF 279


>gi|116873316|ref|YP_850097.1| 5'-3' exonuclease, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742194|emb|CAK21318.1| 5'-3' exonuclease, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 290

 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 150/264 (56%), Gaps = 13/264 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +L +VDG + ++RAFYAT +  +     +G+P N + GF   ++  +    ++S  +H  
Sbjct: 7   NLLVVDGMALLFRAFYATAVSKQFMFNQNGIPTNGVQGFMRHMFAAI----RQSNPTHTL 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEADD I 
Sbjct: 63  ICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEADDCIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T T +      A T++S DKDL+QL+ PT  ++   K     ++ +     ++ GI P++
Sbjct: 123 TIT-VQTSNTIATTVLSGDKDLLQLIRPTNEVWIMQKGYGNYKRYNEATFFEEMGITPKQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++ + I E   
Sbjct: 182 FIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQTK-IQEDLA 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHL 262
              LS+KL  + T+VP+ I L +L
Sbjct: 241 MLELSQKLARIHTEVPLEINLANL 264


>gi|47094187|ref|ZP_00231903.1| 5'-3' exonuclease family protein [Listeria monocytogenes str. 4b
           H7858]
 gi|47017432|gb|EAL08249.1| 5'-3' exonuclease family protein [Listeria monocytogenes str. 4b
           H7858]
          Length = 260

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 14/262 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +EN L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  +
Sbjct: 5   REN-LLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAI----RQSNPT 59

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEADD
Sbjct: 60  HTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEADD 119

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI 
Sbjct: 120 CIGTITVQASNT-IATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGIS 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++ + I E
Sbjct: 179 PRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQTK-IQE 237

Query: 236 YAETARLSRKLVMLRTDVPITI 257
                 LS+KL  + T+VP+ I
Sbjct: 238 DLAKVELSQKLARIHTEVPLEI 259


>gi|154412700|ref|XP_001579382.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
 gi|121913588|gb|EAY18396.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
          Length = 709

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 227/454 (50%), Gaps = 53/454 (11%)

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           E+ N+I +   L       +KL   Y+ ++   +  +  +     ++D + +K    +I 
Sbjct: 280 EDENIIDKTLELFEKFTKDDKLYKWYKDIEMRHLRFMGTIHQKSFKLDLENMKFERYKIE 339

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG---AKTKTGQWK--------- 651
             L  + + IY LSG KFN+ SP ++ ++LF K+K  S    A+TKT   +         
Sbjct: 340 SELKEISDKIYGLSGCKFNILSPFEVSEVLFEKMKLKSNKFSAQTKTIDSRHKNIKHREF 399

Query: 652 --TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T +  L+ IN   +PI++ I ++R LSK+ S +     +  +     +H +  + ST 
Sbjct: 400 APTNSLVLDDIN---HPIVELIKKFRSLSKLVSNWLSF--DQKSDSEGILHPWILVLSTA 454

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA---KIT 765
           TGR++S+ PNLQNIP   D      R F  PPTKK +IS DYSQ+ELRILAH++   K+ 
Sbjct: 455 TGRISSVFPNLQNIPSFNDEQSLNIRKFFLPPTKKTMISVDYSQLELRILAHLSDDKKLK 514

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L  V  +  DIH M+A  IF  N   V+  MR+ AKT  ++ IYG          ++  
Sbjct: 515 DLCNV--DQGDIHSMIAKMIFNKN--NVTEDMRKEAKTNIYATIYG---------KKVEN 561

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
                 I      F GI  +I  T    +  G+++T  G+      I   K S +  +ER
Sbjct: 562 MSGISVI----DIFQGIRSFITNTVIETQNKGFIKTFSGKYRFLPNIRCQKVSDKMRDER 617

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKM--LLQIHDELVFEVPEEEITTASQI 943
            ++N  IQG+AAD  + A+I+V K        T +  ++QIHDE +FE  +EEI T S I
Sbjct: 618 ISVNTIIQGTAADFVKFALINVIKQ-------TNLIPIIQIHDEWIFET-DEEIGTLSFI 669

Query: 944 -IVHSMEKA--CLPKINLRVPLKVNIKVSNNWQE 974
            ++H ++K+  C  +  L V + V I    ++ E
Sbjct: 670 DLIHKIKKSSECSYEFGLNVKIPVKISAGKSFGE 703


>gi|315303809|ref|ZP_07874302.1| 5'-3' exonuclease [Listeria ivanovii FSL F6-596]
 gi|313627821|gb|EFR96461.1| 5'-3' exonuclease [Listeria ivanovii FSL F6-596]
          Length = 290

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 152/267 (56%), Gaps = 14/267 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +EN L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  +
Sbjct: 5   REN-LLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAI----RQSNPT 59

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEADD
Sbjct: 60  HTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVATGFGFVNLGVPGFEADD 119

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            I T T  A     + T++S DKDL+QL++PT  ++   K     ++ +     ++ GI 
Sbjct: 120 CIGTITVQAAST-ISTTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYNEVTFFEEMGIT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + ++AL GD+ D  PG+ GIG KTA  L+QEY ++E +L N +++K  ++ + I E
Sbjct: 179 PRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEYESIEGVLSNLAKLKPAQQTK-IQE 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL 262
                 LS+KL  + T+VP+ + L+ L
Sbjct: 238 DLAMLELSQKLARIHTEVPLEMNLDSL 264


>gi|182414668|ref|YP_001819734.1| 5'-3' exonuclease [Opitutus terrae PB90-1]
 gi|177841882|gb|ACB76134.1| 5'-3' exonuclease [Opitutus terrae PB90-1]
          Length = 320

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 92/259 (35%), Positives = 138/259 (53%), Gaps = 13/259 (5%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVDG +  YR FYA P L+R  DG P NA+ G+   LW L   ++ ++      V FD 
Sbjct: 5   LLVDGFNLAYRCFYAIPELTRA-DGFPTNALHGWLKSLWMLADQTKPDACV----VFFDL 59

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R  ++ DYKA R ++PE L  QLP V+  T+A G   +E +G E+DD++A+    
Sbjct: 60  GGAQDRLALHADYKAQREEMPESLARQLPYVKSLTRAMGCVGVEQEGVESDDLLASQAVA 119

Query: 128 AEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
             + G  V I+S+DKD  Q+V        P       +    +D   V  K+G+PP  + 
Sbjct: 120 LSRAGHEVLIVSSDKDFAQIVDERVKIMLPPPTANPKLGWRLMDAAGVQAKFGVPPRMIA 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD+ DNIPG+ G+G KTAA  L E+  LE ++ + + +K ++ RE I   A+  
Sbjct: 180 DYLALVGDTSDNIPGLAGVGPKTAAKWLNEFETLEGVMAHCAELKPERFREPICAEADKL 239

Query: 241 RLSRKLVMLRTDVPI-TIP 258
           R + KL  L   +P+ ++P
Sbjct: 240 RRNLKLTTLNLGLPVLSVP 258


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 142/542 (26%), Positives = 271/542 (50%), Gaps = 44/542 (8%)

Query: 444  TLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
             +TKE IL+ L++  +NE  +KI  N K+D   L      +    D  + S +LD  ++ 
Sbjct: 1346 NITKESILTGLREVLKNEKVVKIIQNGKFDAKFLMHNKFEVANIFDTYIASKLLDKNKNM 1405

Query: 503  HD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +   + +I +K+L+ T   + K +++S+  + + ++    +A  +S+ +L+L+  L+ ++
Sbjct: 1406 YGFKLNNIVEKYLNVT---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEI 1462

Query: 561  IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI----YDL 616
              E +  V + ++   I  +  ME+ GI +D + L + + EI   L  L E       +L
Sbjct: 1463 CRENMGTVND-IENKCILPICDMELNGITVDLESLSKSTNEI---LSELNEETSKLKAEL 1518

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
              E+ N++S +Q+   L  K       +  + +      D    N  ++  +  +  +R+
Sbjct: 1519 KDEEINVNSQQQVLKALQNK-----NVRDVSNKLIENTSDSNLKNFLNHREVVLLRNYRR 1573

Query: 677  LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            L K+ S +   LP HINK+T ++HT ++   T +GR +S +PNLQ IP +    + IR  
Sbjct: 1574 LYKLYSAFYLKLPQHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREI 1629

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            FI       I AD+ QIEL+I A I     + + + N++D+H + A+ I    I  V+ +
Sbjct: 1630 FIPQKDNIFIIADFRQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKAIADVNKE 1689

Query: 797  MRRHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
             R  AK INF +IYG++   L         L +   +   +   +F  + GI+ +  + K
Sbjct: 1690 DRHIAKAINFGLIYGMNYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHYKGIYRWHNQIK 1749

Query: 851  NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
                          R + Y  +++ K      +   A+N P+QG+ ADI + +++ ++K+
Sbjct: 1750 QM------------RALEYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLSLVELYKN 1797

Query: 911  LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
            L    +  K++L +HDE++ EV ++    A +I+V SME +    +  +V  +V++K++ 
Sbjct: 1798 L--RPINGKIILCVHDEIIIEVDKKYQEDALKILVESMENSASFFLK-KVKCEVSVKIAQ 1854

Query: 971  NW 972
            NW
Sbjct: 1855 NW 1856


>gi|157265423|ref|YP_001467981.1| DNA polymerase I [Thermus phage P74-26]
 gi|156905318|gb|ABU96961.1| DNA polymerase I [Thermus phage P74-26]
          Length = 728

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 228/464 (49%), Gaps = 55/464 (11%)

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV- 598
           +A++++   L LW  +     +   LH +Y  ++ P+ DV+++    G+ +D++ L+++ 
Sbjct: 245 YALDDAMNTLALWEHVEVFFELHPKLHTLYREIELPVNDVMTRATHRGVLVDKEELRRIK 304

Query: 599 ---SAEISKNLLSLEENIYDLSGEKFN-----LSSPKQLGDILFTKLKFPSGAKTKTGQ- 649
               A I +     +E +  L G K +     L+SP+QL  IL+  L +P    T  G  
Sbjct: 305 ETIQARIEEKAQEAQELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAP 364

Query: 650 --WKTTAQDLEQINCGDN---PIIKNILEWRQ----LSKIKSTYADSLPNHINKRTQRVH 700
              KT    L  ++  D    P+ K  LE +Q    L K+ STY DS+   ++ +  R+H
Sbjct: 365 STSKTAIAKLLTLSPKDKKKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQG-RLH 423

Query: 701 TFYSLASTMTGRLASLEPNLQNIP--IKTDLGQK-------IRRAFISPPTKKLISADYS 751
           T ++   T++GR++S  PNLQN+P  +  ++ +K       IR+AF++ P    +SADY+
Sbjct: 424 TNFNTVGTVSGRMSSSNPNLQNLPRLLPEEVAEKPYLQGIDIRKAFVADPGYIFVSADYA 483

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-------KVSPQMRRHAKTI 804
            +EL + A ++    +  +     D+H   A   F V ++       +     R+ AK +
Sbjct: 484 SMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQKAKVV 543

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE-TIF 863
           NF++IYG + F L         EA   I+ YF  +P +  ++E+    + + G+VE  I+
Sbjct: 544 NFALIYGGTEFTLIKNFGFSEEEAKQLIQGYFEAYPVVKTWMEEVYRELEEKGFVEYPIY 603

Query: 864 G-----------RRIHYDEI-----NSPKSSIRNINE-RAAINAPIQGSAADITRRAMIS 906
           G           R++  D+      N P +  +     R+  NA IQG +A + + A++ 
Sbjct: 604 GYIKRMDLPQALRKLPKDKWPLVLNNDPDARKQYYASLRSCQNALIQGFSAFVVKDAIVQ 663

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           + ++ E   L  ++++Q+HDE+V    EE     +QI+V  ME+
Sbjct: 664 MQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMER 707


>gi|157265305|ref|YP_001467864.1| DNA polymerase I [Thermus phage P23-45]
 gi|156905200|gb|ABU96844.1| DNA polymerase I [Thermus phage P23-45]
          Length = 728

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 228/464 (49%), Gaps = 55/464 (11%)

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV- 598
           +A++++   L LW  +     +   LH +Y  ++ P+ DV+++    G+ +D++ L+++ 
Sbjct: 245 YALDDAMNTLALWEHVEVFFELHPKLHALYREIELPVNDVMTRATHRGVLVDKEELRRIK 304

Query: 599 ---SAEISKNLLSLEENIYDLSGEKFN-----LSSPKQLGDILFTKLKFPSGAKTKTGQ- 649
               A I +     +E +  L G K +     L+SP+QL  IL+  L +P    T  G  
Sbjct: 305 ETIQARIEEKAQEAQELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAP 364

Query: 650 --WKTTAQDLEQINCGDN---PIIKNILEWRQ----LSKIKSTYADSLPNHINKRTQRVH 700
              KT    L  ++  D    P+ K  LE +Q    L K+ STY DS+   ++ +  R+H
Sbjct: 365 STSKTAIAKLLTLSPKDKRKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQG-RLH 423

Query: 701 TFYSLASTMTGRLASLEPNLQNIP--IKTDLGQK-------IRRAFISPPTKKLISADYS 751
           T ++   T++GR++S  PNLQN+P  +  ++ +K       IR+AF++ P    +SADY+
Sbjct: 424 TNFNTVGTVSGRMSSSNPNLQNLPRLLPEEVAEKPYLQGIDIRKAFVADPGYIFVSADYA 483

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-------KVSPQMRRHAKTI 804
            +EL + A ++    +  +     D+H   A   F V ++       +     R+ AK +
Sbjct: 484 SMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQKAKVV 543

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE-TIF 863
           NF++IYG + F L         EA   I+ YF  +P +  ++E+    + + G+VE  I+
Sbjct: 544 NFALIYGGTEFTLIKNFGFSEEEAKQLIQGYFEAYPVVKTWMEEVYRELEEKGFVEYPIY 603

Query: 864 G-----------RRIHYDEI-----NSPKSSIRNINE-RAAINAPIQGSAADITRRAMIS 906
           G           R++  D+      N P +  +     R+  NA IQG +A + + A++ 
Sbjct: 604 GYIKRMDLPQALRKLPKDKWPLVLNNDPDARKQYYASLRSCQNALIQGFSAFVVKDAIVQ 663

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           + ++ E   L  ++++Q+HDE+V    EE     +QI+V  ME+
Sbjct: 664 MQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMER 707


>gi|225158900|ref|ZP_03725214.1| 5'-3' exonuclease [Opitutaceae bacterium TAV2]
 gi|224802518|gb|EEG20776.1| 5'-3' exonuclease [Opitutaceae bacterium TAV2]
          Length = 298

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/246 (36%), Positives = 138/246 (56%), Gaps = 12/246 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG +  YR F+A P L+R  DG P NA+ G+   LW+L+   R   +     V FD 
Sbjct: 5   LLIDGFNLAYRCFFAIPELTRS-DGFPTNALHGWVKSLWRLIDQERPNGVR----VFFDL 59

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R  + P+YKA R ++PE L+ QLPL++  T+  GI AIE  G E+DD++A     
Sbjct: 60  GGSQDRLALLPEYKAQRAEMPEALVRQLPLIKDLTRLLGITAIEQHGVESDDLLAAQAVT 119

Query: 128 AEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
               G  V ++S+DKD  Q+V+       P       +   + D   V++K+G+PP ++ 
Sbjct: 120 LAAAGDNVLVVSSDKDFAQIVNDRITLLLPPPTANPKLGWRRRDTAGVLEKFGVPPAQIA 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD+ DNIPG+ G+G KTAA  L E+G L+N+L +A  +K ++ R+ +   A+  
Sbjct: 180 DYLAIVGDTSDNIPGLAGVGPKTAAKWLIEFGTLDNLLAHAGEVKPERFRDPLAAQADAL 239

Query: 241 RLSRKL 246
           R +R+L
Sbjct: 240 RRNRRL 245


>gi|289178750|gb|ADC85996.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 672

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 165/672 (24%), Positives = 288/672 (42%), Gaps = 67/672 (9%)

Query: 7   LFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH---- 60
           L ++DG S  +RAFY  +   L ++  G         C +  +LL ++     A H    
Sbjct: 22  LLVIDGHSLAFRAFYRASGEFLGQRRSGHQ-------CGL--RLLHDA----FAGHRIEK 68

Query: 61  ---FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFRN++   YK  R   PE L+ Q+PL++   +AFG+  +  QG+E 
Sbjct: 69  PDLLGVAFDVKGGTFRNKMLTQYKGTREAAPEELISQIPLIQDMLEAFGVTYVTKQGYEG 128

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDT--VKEEKIDIEHVIK-KWG 173
           DD+IAT   + E   +   ++S D+D  QL+    T LY     KE K      ++ K+ 
Sbjct: 129 DDVIATLATMGEHADYRTYVLSGDRDAFQLIDDDITVLYPGYHFKELKAMTPQAVEDKYH 188

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P +   L AL G++ DNIPG+PG+G   AA  + +YG L+ ++ +A  IK KK  + +
Sbjct: 189 VTPRQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDGVIEHADEIKGKK-GDAL 247

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI-NRVATTY 292
            E  E  RL+RK+  L  D+ + + +  L     +  +       L F   I +++  T+
Sbjct: 248 RESIEQIRLNRKVNALVRDLDLGVDIADLTFGKVDPAKAEELFNQLNFGARIRSKLLKTF 307

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL-- 350
           +      +PV    +  E      E E D D +  T +  S+  Q   ++    P  L  
Sbjct: 308 NAGDPG-QPVAKKASDAER--FEFEGEFD-DGSFDTPE--SVRVQEPVVDEIDAPASLEA 361

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDI--QQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           + ++   ++     + +   +V   D   QQ V+ +E  GS S         +   KP  
Sbjct: 362 WAQQHCPIASGKSISSTTLDVVGEYDAQSQQCVEAVE--GSWSL------FASGSPKPGR 413

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH- 467
            +IS L    D       + +D   H  Q       +     + L      EH   +G  
Sbjct: 414 SSISGLALMADG----HAVVVD--PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLGAV 467

Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
           N++   ++            D  L  Y++D       +   A  +L    +E+ ++ + +
Sbjct: 468 NLRLPMVLF-----------DTNLAGYLIDPDFQGGSLQDCADHFLHRHAEEVTETEQGT 516

Query: 528 IPIDKISDSQVQ--EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           + I  + D + +     + N+ ++  L   L  +L       +   ++ P    +  ME 
Sbjct: 517 LDI-GMDDERAERDRKVVRNAAIVSLLARTLARQLEQRCQYSLLRDIELPTSVALFHMEH 575

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG  +D+  L ++    +     +E+  Y+ +G + NL SPKQLG +LF ++      KT
Sbjct: 576 TGASVDRARLDELLEMFTDESNRMEQICYEAAGHEVNLQSPKQLGVVLFEEMGLNPTKKT 635

Query: 646 KTGQWKTTAQDL 657
           K G + T  + L
Sbjct: 636 KRGSYSTNRKAL 647


>gi|325000598|ref|ZP_08121710.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 325

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 106/290 (36%), Positives = 149/290 (51%), Gaps = 10/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P  + R   G   NA+ GF +ML  LL++       +H AV F
Sbjct: 31  LLLLDGHSLAYRAFFALPAENFRTGTGQTTNAVYGFTSMLINLLRDEE----PTHLAVAF 86

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E + DYKANR   P+    Q+ L++    A  IP   + GFEADD+IAT  
Sbjct: 87  DVSRKTFRSERFADYKANRTTTPDDFRGQIDLIKEVLGALNIPVFAVDGFEADDLIATLA 146

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181
             AE +GF V I + D+D  QLV+   T LY         +ID   V K++G+ P +   
Sbjct: 147 TQAEGQGFQVLITTGDRDAFQLVTEDVTVLYPKRGVSDLGRIDPAEVDKRYGLTPTQYPD 206

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P IPG+G KTAA  ++E+G+L  +      +K K   +N+        
Sbjct: 207 FAALRGDPSDNLPSIPGVGEKTAAKWVREFGSLAELTDRVDEVKGKA-GDNLRANLANVL 265

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           L+R+L  L  DV +    E L +   +   +      LEF  L  R+ +T
Sbjct: 266 LNRQLTELVRDVDLGAGPEQLEVRAWDRDAVHRLFDELEFRVLRERLFST 315


>gi|261408888|ref|YP_003245129.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Paenibacillus sp. Y412MC10]
 gi|261285351|gb|ACX67322.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus sp. Y412MC10]
          Length = 298

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 155/288 (53%), Gaps = 20/288 (6%)

Query: 7   LFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG + ++RA+YAT     + R   G+P NAI GF   +W  +   +     +H A 
Sbjct: 11  LMLVDGMALLFRAYYATASSGYIRRTKAGVPTNAIYGFLRYMWDAIDKFQP----THVAC 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E +  YK NRP+ P+ L+PQ  LVR  T+  GIP + + G+EADD I T
Sbjct: 67  CWDMGSKTFRTEQFASYKGNRPEAPDDLVPQFSLVRDVTECLGIPNLGVVGYEADDCIGT 126

Query: 124 YTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPP 176
              +A + G    V I+S D DL+QLV+ +T +   +K+   +  H     +  + G+ P
Sbjct: 127 ---LARRFGDSMNVMILSGDHDLLQLVNDSTSVI-IMKKGHGNYMHYTPETLYAEKGLSP 182

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GD+ DN PG+ GIG KTA  L+QEY ++E IL N   +  K  R  I   
Sbjct: 183 RQVIDVKGLMGDTSDNYPGVRGIGEKTAVKLIQEYESVEGILANLDSL-TKGVRTKIEAD 241

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E   LSR L  +  +VP+   L+ L     +  R ++ L+ LE   L
Sbjct: 242 LEMLHLSRALAEIHCEVPMECELD-LCRLSVDHERALTKLEELEMKSL 288


>gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group]
          Length = 982

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 153/309 (49%), Gaps = 27/309 (8%)

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
           +HI+ +  R+H   ++ +T TGRL++  P+LQN P       KIR+AF++ P   LI AD
Sbjct: 671 DHISCKEGRIHCSLNI-NTETGRLSARTPSLQNQPALEKDRYKIRQAFVAAPGNTLIVAD 729

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796
           Y Q+ELRILAH+     + + F+   D H   A  ++      V  +KV     PQ    
Sbjct: 730 YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 789

Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                         RR AK +NFSI YG +   L+    +   EA D +K +      I 
Sbjct: 790 KPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDRKEIS 849

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            + +K K    +   V T+ GR   +  +       ++  ERAAINAP+QGSAAD+   A
Sbjct: 850 AWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAGPGQKSHVERAAINAPVQGSAADVAMCA 909

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ + ++    +L  ++LLQ+HDE++ E P E    A  I+V  M K       L+V L 
Sbjct: 910 MLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKAIVVECMSKPFYGTNILKVDLA 969

Query: 964 VNIKVSNNW 972
           V+ K + +W
Sbjct: 970 VDAKYAKSW 978



 Score = 39.3 bits (90), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 43/194 (22%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS--- 502
           +++L     FFE+    K+ HN  +D  V+   GI + GF  D M ++ + DS R +   
Sbjct: 280 RDVLMEFAPFFEDPSIKKVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGG 339

Query: 503 --------------------HDIASIAQKWLSYTRKEILK--SRKSSIPIDKISDSQVQE 540
                               H    ++ K + + RK + K  S   +I I+ +   Q ++
Sbjct: 340 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTI-FGRKNVRKNGSEGKTISIEPVKKLQRED 398

Query: 541 HAIE------NSNVILQLWLLLRPKLIVEK----------LLHVYERLDKPMIDVVSQME 584
             +       +S   L+L+  L+ KL  ++          +   YE   +P   ++ +ME
Sbjct: 399 RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKME 458

Query: 585 ITGIQIDQDLLKQV 598
             G+ +D+  L ++
Sbjct: 459 TEGMFVDRAYLSEI 472


>gi|311086162|gb|ADP66244.1| DNA polymerase I [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
          Length = 312

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 152/271 (56%), Gaps = 14/271 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN-SRKESIASHF 61
           K N + ++DGS ++Y ++YA   L     G P  AI G    + K++ N  +K       
Sbjct: 5   KNNPVIIIDGSLYLYASYYAFCNLENT-SGKPCGAIYG----MLKIIDNIFKKYKNLKKI 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDI 120
            +IFD    TFRN+++ +YK NR  +P++L+ Q+ PL  +  +  GI  + I G EADD+
Sbjct: 60  IIIFDSSRKTFRNKLFKEYKKNRSSMPDLLVMQIQPLFEI-LKKIGIKTLTIPGIEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I + +Y  EK+G  + I+S DKD++QLV+    ++       I  E + +K+GI P++ +
Sbjct: 119 IGSLSYQLEKQGEKILILSHDKDMLQLVTENINIFHKKNNCIITSEIIQEKYGIKPKEFI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NIL 234
              AL GD+ DNIPG+P IG KTA  L+ ++ N+ENI  N  +IK    R        + 
Sbjct: 179 DFLALMGDATDNIPGVPKIGIKTALFLINKFSNIENIYNNIEKIKSLPLRNAKNISIQLK 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILE 265
              E A LS KL  ++ D+PI I L+ +IL+
Sbjct: 239 NNKEIALLSYKLARIKLDIPIDIKLKDIILK 269


>gi|15617030|ref|NP_240243.1| DNA polymerase I [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|17366258|sp|P57506|EX53_BUCAI RecName: Full=5'-3' exonuclease
 gi|25331616|pir||A84980 DNA-directed DNA polymerase (EC 2.7.7.7) [imported] - Buchnera sp.
           (strain APS)
 gi|10039095|dbj|BAB13129.1| DNA polymerase I [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 286

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 152/271 (56%), Gaps = 14/271 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN-SRKESIASHF 61
           K N + ++DGS ++Y ++YA   L     G P  AI G    + K++ N  +K       
Sbjct: 5   KNNPVIIIDGSLYLYASYYAFCNLEN-TSGKPCGAIYG----MLKIIDNIFKKYKNLKKI 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDI 120
            +IFD    TFRN+++ +YK NR  +P++L+ Q+ PL  +  +  GI  + I G EADD+
Sbjct: 60  IIIFDSSRKTFRNKLFKEYKKNRSSMPDLLVMQIQPLFEI-LKKIGIKTLTIPGIEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I + +Y  EK+G  + I+S DKD++QLV+    ++       I  E + +K+GI P++ +
Sbjct: 119 IGSLSYQLEKQGEKILILSHDKDMLQLVTENINIFHKKNNCIITSEIIQEKYGIKPKEFI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NIL 234
              AL GD+ DNIPG+P IG KTA  L+ ++ N+ENI  N  +IK    R        + 
Sbjct: 179 DFLALMGDATDNIPGVPKIGIKTALFLINKFSNIENIYNNIEKIKSLPLRNAKNISIQLK 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILE 265
              E A LS KL  ++ D+PI I L+ +IL+
Sbjct: 239 NNKERALLSYKLARIKLDIPIDIKLKDIILK 269


>gi|219681782|ref|YP_002468168.1| DNA polymerase I [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682337|ref|YP_002468721.1| DNA polymerase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471484|ref|ZP_05635483.1| DNA polymerase I [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219622070|gb|ACL30226.1| DNA polymerase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624625|gb|ACL30780.1| DNA polymerase I [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311086734|gb|ADP66815.1| DNA polymerase I [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087830|gb|ADP67909.1| DNA polymerase I [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 286

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 152/271 (56%), Gaps = 14/271 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN-SRKESIASHF 61
           K N + ++DGS ++Y ++YA   L     G P  AI G    + K++ N  +K       
Sbjct: 5   KNNPVIIIDGSLYLYASYYAFCNLEN-TSGKPCGAIYG----MLKIIDNIFKKYKNLKKI 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDI 120
            +IFD    TFRN+++ +YK NR  +P++L+ Q+ PL  +  +  GI  + I G EADD+
Sbjct: 60  IIIFDSSRKTFRNKLFKEYKKNRSSMPDLLVMQIQPLFEI-LKKIGIKTLTIPGIEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I + +Y  EK+G  + I+S DKD++QLV+    ++       I  E + +K+GI P++ +
Sbjct: 119 IGSLSYQLEKQGEKILILSHDKDMLQLVTENINIFHKKNNCIITSEIIQEKYGIKPKEFI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NIL 234
              AL GD+ DNIPG+P IG KTA  L+ ++ N+ENI  N  +IK    R        + 
Sbjct: 179 DFLALMGDATDNIPGVPKIGIKTALFLINKFSNIENIYNNIEKIKSLPLRNAKNISIQLK 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILE 265
              E A LS KL  ++ D+PI I L+ +IL+
Sbjct: 239 NNKEIALLSYKLARIKLDIPIDIKLKDIILK 269


>gi|71660963|ref|XP_817509.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70882706|gb|EAN95658.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 924

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 151/292 (51%), Gaps = 25/292 (8%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK------------IRRAFISPPTKKLI 746
           +H  +    T TGRL+ +EPNLQN+P    + +              RR F  P    L+
Sbjct: 629 LHPNFVQEGTDTGRLSCVEPNLQNLPRSKAIAENDNSEPYEAEMATFRRCFAVPIGLTLL 688

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---GVNIEKVSPQMRRHAKT 803
           S DY QIELR++AH++  T L     N+ D+HR +A  IF    VN+E+     R  AK 
Sbjct: 689 SVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSPVNVEE-----RTLAKR 743

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           + F ++YG  P  LATQ+ +P   A   +  +   +P I  Y  +  +  R +G+V T+ 
Sbjct: 744 VVFGMLYGAGPRTLATQMGVPMERALHVMSLFKASYPQIERYQRRVIDQCRTDGFVRTMT 803

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLATKMLL 922
           GR     +IN    + R   ER A N+ IQGSAAD+ +  M++V +  L+ +    ++L 
Sbjct: 804 GRIRSLPDINDRVMAKRMYAERQAFNSVIQGSAADVMKLGMLAVERDVLQLYNGDVRLLA 863

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDE+V  VP  ++     ++  SM  A    ++L VPL+V +++  +  E
Sbjct: 864 QIHDEIVLSVPTHKLREVVPLVSRSMMHA----VSLLVPLRVTVRIGQSLGE 911


>gi|322822411|gb|EFZ28469.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 151/292 (51%), Gaps = 25/292 (8%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK------------IRRAFISPPTKKLI 746
           +H  +    T TGRL+ +EPNLQN+P    + +              RR F  P    L+
Sbjct: 632 LHPNFVQEGTDTGRLSCVEPNLQNLPRSKAIAENDNSEPYEAEMATFRRCFAVPIGLTLL 691

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---GVNIEKVSPQMRRHAKT 803
           S DY QIELR++AH++  T L     N+ D+HR +A  IF    VN+E+     R  AK 
Sbjct: 692 SVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSPVNVEE-----RTLAKR 746

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           + F ++YG  P  LATQ+ +P   A   +  +   +P I  Y  +  +  R +G+V T+ 
Sbjct: 747 VVFGMLYGAGPRTLATQMGVPMERALHVMSLFKASYPQIERYQRRVIDQCRTDGFVRTMT 806

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLATKMLL 922
           GR     +IN    + R   ER A N+ IQGSAAD+ +  M++V +  L+ +    ++L 
Sbjct: 807 GRIRSLPDINDRVMAKRMYAERQAFNSVIQGSAADVMKLGMLAVERDVLQLYNGDVRLLA 866

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDE+V  VP  ++     ++  SM  A    ++L VPL+V +++  +  E
Sbjct: 867 QIHDEIVLSVPTHKLREVVPLVSRSMMHA----VSLLVPLRVTVRIGQSLGE 914


>gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 1035

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 153/309 (49%), Gaps = 27/309 (8%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            +HI+ +  R+H   ++ +T TGRL++  P+LQN P       KIR+AF++ P   LI AD
Sbjct: 724  DHISCKEGRIHCSLNI-NTETGRLSARTPSLQNQPALEKDRYKIRQAFVAAPGNTLIVAD 782

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796
            Y Q+ELRILAH+     + + F+   D H   A  ++      V  +KV     PQ    
Sbjct: 783  YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 842

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+    +   EA D +K +      I 
Sbjct: 843  KPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDRKEIS 902

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             + +K K    +   V T+ GR   +  +       ++  ERAAINAP+QGSAAD+   A
Sbjct: 903  AWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAGPGQKSHVERAAINAPVQGSAADVAMCA 962

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ + ++    +L  ++LLQ+HDE++ E P E    A  I+V  M K       L+V L 
Sbjct: 963  MLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKAIVVECMSKPFYGTNILKVDLA 1022

Query: 964  VNIKVSNNW 972
            V+ K + +W
Sbjct: 1023 VDAKYAKSW 1031



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 43/194 (22%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS--- 502
           +++L     FFE+    K+ HN  +D  V+   GI + GF  D M ++ + DS R +   
Sbjct: 333 RDVLMEFAPFFEDPSIKKVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGG 392

Query: 503 --------------------HDIASIAQKWLSYTRKEILK--SRKSSIPIDKISDSQVQE 540
                               H    ++ K + + RK + K  S   +I I+ +   Q ++
Sbjct: 393 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTI-FGRKNVRKNGSEGKTISIEPVKKLQRED 451

Query: 541 HAIE------NSNVILQLWLLLRPKLIVEK----------LLHVYERLDKPMIDVVSQME 584
             +       +S   L+L+  L+ KL  ++          +   YE   +P   ++ +ME
Sbjct: 452 RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKME 511

Query: 585 ITGIQIDQDLLKQV 598
             G+ +D+  L ++
Sbjct: 512 TEGMFVDRAYLSEI 525


>gi|302546244|ref|ZP_07298586.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463862|gb|EFL26955.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 388

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 151/281 (53%), Gaps = 10/281 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  YRAF+A P  +     G   NAI GF +ML     N+ ++   +H AV 
Sbjct: 32  RLLLLDGHSLAYRAFFALPAENFSTTSGQTTNAIYGFTSML----ANTLRDEQPTHLAVA 87

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    T+R+E + +YKANR K P+    Q+ L+        +    + GFEADD+IAT 
Sbjct: 88  FDVSRKTWRSEQFAEYKANRSKSPDEFKGQVELIGELLDTMNVTRFAVDGFEADDVIATL 147

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMV 180
              AE EGF V I++ D+D  QLVS   T LY T  V E  +   E V +K+G+ P +  
Sbjct: 148 ATQAEAEGFEVLIVTGDRDSFQLVSDHVTVLYPTKGVSELTRFTPEKVQEKYGLTPRQYP 207

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD  DN+PGIPG+G KTAA  + ++G+ ++++     +K K   E + ++ E+ 
Sbjct: 208 DFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFQDLVERVDEVKGKV-GEKLRDHLESV 266

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           +L+R+L  L  DV +    + L     +   L   + ALEF
Sbjct: 267 KLNRQLTELVRDVELGTGPDGLKRVPYDRAALGVIMDALEF 307


>gi|12043539|emb|CAC19788.1| DNA polymerase 1 [Burkholderia cepacia]
          Length = 224

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 125/207 (60%), Gaps = 5/207 (2%)

Query: 19  AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYP 78
           A +A P L R  +G P  A+ G  NML ++    RKE  A + A +FD    TFR++ Y 
Sbjct: 5   ALHAMPDL-RGPEGGPTGALYGIVNMLRRM----RKEITAEYSACVFDAKGKTFRDDWYA 59

Query: 79  DYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII 138
           DYKANR  +P+ L  Q+  + +A +A G P + I+G EADD+I T +  AEK G  V + 
Sbjct: 60  DYKANRASMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLSTAAEKRGMNVIVS 119

Query: 139 STDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
           + DKDL QLVS    L +T+  E +D   VI K+G+PPE+++   +L GD++DN+PG+  
Sbjct: 120 TGDKDLAQLVSDHVTLINTMTNETLDRAGVIAKFGVPPERIIDYLSLIGDTVDNVPGVEK 179

Query: 199 IGYKTAALLLQEYGNLENILINASRIK 225
            G KTA   L ++ +L+ I+ +A  IK
Sbjct: 180 CGPKTALKWLTQFDSLDGIVAHADEIK 206


>gi|311087322|gb|ADP67402.1| DNA polymerase I [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 286

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 152/271 (56%), Gaps = 14/271 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN-SRKESIASHF 61
           K N + ++DGS ++Y ++YA   L     G P  AI G    + K++ N  +K       
Sbjct: 5   KNNPVIIIDGSLYLYASYYAFFNLEN-TSGKPCGAIYG----MLKIIDNIFKKYKNLKKI 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDI 120
            +IFD    TFRN+++ +YK NR  +P++L+ Q+ PL  +  +  GI  + I G EADD+
Sbjct: 60  IIIFDSSRKTFRNKLFKEYKKNRSSMPDLLVMQIQPLFEI-LKKIGIKTLTIPGIEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I + +Y  EK+G  + I+S DKD++QLV+    ++       I  E + +K+GI P++ +
Sbjct: 119 IGSLSYQLEKQGEKILILSHDKDMLQLVTENINIFHKKNNCIITSEIIQEKYGIKPKEFI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NIL 234
              AL GD+ DNIPG+P IG KTA  L+ ++ N+ENI  N  +IK    R        + 
Sbjct: 179 DFLALMGDATDNIPGVPKIGIKTALFLINKFSNIENIYNNIEKIKSLPLRNAKNISIQLK 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILE 265
              E A LS KL  ++ D+PI I L+ +IL+
Sbjct: 239 NNKEIALLSYKLARIKLDIPIDIKLKDIILK 269


>gi|194017027|ref|ZP_03055640.1| 5'-3' exonuclease [Bacillus pumilus ATCC 7061]
 gi|194011633|gb|EDW21202.1| 5'-3' exonuclease [Bacillus pumilus ATCC 7061]
          Length = 295

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 166/299 (55%), Gaps = 25/299 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPL----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           H+ LVDG + ++R+FYAT +    +   H G+P N + G+   L   +Q        +H 
Sbjct: 4   HVLLVDGMALLFRSFYATAVHRNFMINDH-GVPTNGVNGYLKHLLTAVQTFE----PTHI 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + T+RNE++ DYKANR + P  L+PQ  L + AT+  GI  I ++GFEADD I
Sbjct: 59  VCCWDMGSQTYRNELFQDYKANRGEAPVELIPQFDLAKEATEELGIVNIGLKGFEADDCI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVI-KKWGIPPE 177
            T   + +KE   VT+++ DKDL+Q+++       +   +   K+  + +  ++ GI P+
Sbjct: 119 GTLATLYQKEA-RVTVLTGDKDLLQILNEQVTVALMQKGIGNYKLYTKALFEEEMGISPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI---KQKKRRENIL 234
            ++ ++AL GD+ DN PG+ GIG KTA   +Q Y  ++ +L N   +   +QKK +  + 
Sbjct: 178 ALIDMKALMGDASDNYPGVKGIGEKTALKFIQTYETIDGLLENVHELTATQQKKMQAGL- 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK---LINRVAT 290
              E  +LSR L  ++ DVP++ P++   + + N  R  + L+  +      ++NR++T
Sbjct: 237 ---EDLKLSRLLAEIKCDVPLSCPMDETKM-NINQERAAAMLRHHQIKGIEPMMNRLST 291


>gi|152975115|ref|YP_001374632.1| 5'-3' exonuclease [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023867|gb|ABS21637.1| 5'-3' exonuclease [Bacillus cytotoxicus NVH 391-98]
          Length = 288

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/270 (36%), Positives = 142/270 (52%), Gaps = 17/270 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++RAFYAT +     ++ DG P N I G+   L    Q        +H 
Sbjct: 2   NKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAAQTIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAQLSIPVIGMKGYEADDCI 117

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            T    Y +E E   V I++ D DL+QLV     +    K     E    E ++++ G+ 
Sbjct: 118 GTLAKKYCSEAE---VYILTGDTDLLQLVDTNVTVMLLRKGVGNYEYYTPEKIMEEKGVE 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N S +  K +R  I  
Sbjct: 175 PWQIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVAAVLENISSLT-KAQRTKIEN 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE 265
             E   LS +L  +  +VPI+  LE  + E
Sbjct: 234 DLENLNLSLQLAEIHCEVPISCSLEESVHE 263


>gi|251795439|ref|YP_003010170.1| 5'-3' exonuclease [Paenibacillus sp. JDR-2]
 gi|247543065|gb|ACT00084.1| 5'-3' exonuclease [Paenibacillus sp. JDR-2]
          Length = 285

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 146/265 (55%), Gaps = 11/265 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           EN + +VDG + ++RAF+A    +R+  DG P NAI GF   L+  +   +     +H A
Sbjct: 3   ENKILIVDGMALLFRAFFAQQYSARRMADGTPTNAIYGFMQYLFDAVNQFQP----THVA 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             +D  + TFR E+Y +YKANRP+ P+ L+PQ  LV+    A GIP I I+G+EADD I 
Sbjct: 59  CCWDMGSKTFRTEMYSNYKANRPEAPDDLIPQFSLVKDIVAALGIPNIGIEGYEADDCIG 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEK 178
           T +    +    V I++ D+D++QLV     +    K        D+  + +  GI P +
Sbjct: 119 TVSKQLSQMAH-VYILTGDQDMLQLVEERIHVVIMKKGRGNYAVYDLGFLKEDKGIHPFQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ LTGD+ DN PG+ GIG KTA  LLQE+ +++ IL N   +  K  +  I    +
Sbjct: 178 VIEMKGLTGDTSDNYPGVKGIGEKTALKLLQEFESIDGILSNLDSVS-KSIKAKIEADLD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLI 263
              LSR L  +  +VP+   LE  +
Sbjct: 237 MLHLSRTLARINIEVPVACSLEECV 261


>gi|224476563|ref|YP_002634169.1| putative 5'-3' exonuclease [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421170|emb|CAL27984.1| putative 5'-3' exonuclease [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 295

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 151/260 (58%), Gaps = 13/260 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT + +   R  +G P N + GF   ++  +++       +H 
Sbjct: 3   NRVLLVDGMALLFRHFYATSIHNQYMRNREGTPTNGVQGFIRHIFSAIEDIN----PTHI 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRNE++  YK +RP  P+ L PQ  LV+  ++A G   I +Q +EADD+I
Sbjct: 59  AVCWDMGQQTFRNEVFTAYKQHRPAPPDELKPQFDLVKQMSEALGFINIGVQNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI----DIEHVIKKWGIPPE 177
            T +    KE   + I++ DKD++Q ++P   ++ T K   I    D+E    ++ + P 
Sbjct: 119 GTLSNNLSKEN-KIYIVTGDKDILQCINPNVQVWLTKKGFNIYNRYDLERYQAEYNLNPL 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GDS D  PG+ GIG KTA  L+Q+Y ++EN++ +   +   ++++ I+ + 
Sbjct: 178 QLIDIKAFMGDSADGYPGVKGIGEKTALKLIQQYQSVENVINHIDELTPGQQKK-IISHM 236

Query: 238 ETARLSRKLVMLRTDVPITI 257
           +  +LS++L  + T+VP+ I
Sbjct: 237 DDLKLSKQLAAIHTEVPLDI 256


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 153/551 (27%), Positives = 268/551 (48%), Gaps = 64/551 (11%)

Query: 452 YLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVL-DSGRSSHDIASIA 509
           +LK+  EN+    IGHN+K+D K +   +GI  +   D M+ S +L +  R  H +++++
Sbjct: 71  HLKELLENKGV--IGHNLKFDIKFLKTNFGIFPQIVFDTMIASQLLSEDSREKHSLSALS 128

Query: 510 QKWLSYTRKEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-------I 561
            +    T   + KS+ +S   I  +++ Q++ +A ++  V+ +++ +LR +L        
Sbjct: 129 YRL---TDNHLDKSQQRSPWGIKNLTEEQLR-YAAKDVQVLREIFPVLRDELNRIETPHK 184

Query: 562 VEKLLHVYERLDKPMIDV-------VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
               +H    LD  +  V       ++ +E+ G+ +D+ LLK +  ++S +     E I 
Sbjct: 185 ATGKIHETFGLDNGVAVVEMAFVPQLADIELRGMPVDEKLLKDMLQKVSTDYQ--REYID 242

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT-TAQDLEQINCGDNPIIKNILE 673
            +     +  SP+++ + L +KL    G K  T Q  + ++QD       D   ++ +L 
Sbjct: 243 FVRRYGVDPFSPQKVTNWLTSKL----GLKLPTTQKGSLSSQDSALRRYIDREEVRKLLH 298

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
            R   KI     +   + IN R   ++T +      TGR+AS+ PNLQNI       + +
Sbjct: 299 IRSEKKILDKLKELKAHLINGR---IYTQFKQIGAPTGRMASMRPNLQNIT------RDL 349

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R  F  P  KKLI ADYSQIELRI A       + + F    D+HR  A+ I G   +++
Sbjct: 350 RVLFRPPEGKKLIVADYSQIELRIAAEYVNDETMIKAFSEGKDLHRFTASLILGKEYDQI 409

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHEYIE 847
           +   R+ AK INF +IYGISP  L    R      I   +A  +  R+F  + G   + +
Sbjct: 410 TKDERQMAKAINFGLIYGISPRSLMEYARNSYGVDISLKDAQIFHSRFFEVYKGFKSWHD 469

Query: 848 KTKNFVRQNG--YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           + K +++++    V T+ GRR+           +R   E  A+N P+QG+ +D+ + A++
Sbjct: 470 RVKEYLKEHNKMVVYTLLGRRM----------VVRRFTE--AVNFPVQGTGSDLLKMAVV 517

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL-RVPLKV 964
              K  ED       L  +HDE++ E  E        I+  SM +A   KI L +VP++ 
Sbjct: 518 FFGKLKEDRDAGIVNL--VHDEIIVECSESIADEIRDILSESMLRAG--KILLKKVPVEF 573

Query: 965 NIKVSNNWQEE 975
            +++  +W E+
Sbjct: 574 EVEIVESWAEK 584


>gi|313623190|gb|EFR93447.1| 5'-3' exonuclease [Listeria innocua FSL J1-023]
          Length = 290

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 150/268 (55%), Gaps = 13/268 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAI----RQSNP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     + T++S DKDL+QL++PT  ++   K     ++ +     ++ GI
Sbjct: 119 DCIGTITVQASNS-ISTTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYNEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++ + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++ + I 
Sbjct: 178 TPKQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQLK-IQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHL 262
           E      LS+KL  + T+VP+ + L  L
Sbjct: 237 EDLAMLELSQKLAKIHTEVPLEMNLASL 264


>gi|16801060|ref|NP_471328.1| hypothetical protein lin1994 [Listeria innocua Clip11262]
 gi|16414495|emb|CAC97224.1| lin1994 [Listeria innocua Clip11262]
          Length = 290

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 150/268 (55%), Gaps = 13/268 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAI----RQSNP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T +      + T++S DKDL+QL++PT  ++   K     ++ +     ++ GI
Sbjct: 119 DCIGTIT-VQASSSISTTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYNEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++ + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++ + I 
Sbjct: 178 TPKQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQLK-IQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHL 262
           E      LS+KL  + T+VP+ + L  L
Sbjct: 237 EDLAMLELSQKLAKIHTEVPLEMNLASL 264


>gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 7/234 (2%)

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVH 700
           G K KTG   +T + +  I    +P+I  IL++R+L+K+ STY + L    +  +  R++
Sbjct: 1   GKKGKTGY--STDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIY 58

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           + +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELRILAH
Sbjct: 59  SSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAH 118

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
            ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    L+  
Sbjct: 119 FSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQN 174

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           L+I  + A  YI++YF  F  I +Y EK KN  +QNG++ T+ GR+ ++D  N+
Sbjct: 175 LKIEANLAKSYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENA 228


>gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
 gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I
 gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
          Length = 574

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 151/549 (27%), Positives = 261/549 (47%), Gaps = 83/549 (15%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           +GHN+K+D   L+RYGI      D M+ SY+L  G   H +  I    L Y+  +  ++ 
Sbjct: 71  VGHNLKFDLKYLYRYGIFPSATFDTMIASYLL--GYERHSLNHIVSNLLGYSMDKSYQTS 128

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLR-----------PKLIVEKLLHVYERLD 573
                +  +SD+Q++ +A  +  V+ +L+  +R            +L+  +   +++ L 
Sbjct: 129 DWGASV--LSDAQLK-YAANDVIVLRELFPKMRDMLNELDAERGEELLKTRTAKIFD-LK 184

Query: 574 KPMIDV-------VSQMEITGIQID----QDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            P+  V       V+++EI G  +D     + LK V  E  K +    +  Y     K+ 
Sbjct: 185 SPVAIVEMAFVREVAKLEINGFPVDVEELTNKLKAVERETQKRI----QEFYI----KYR 236

Query: 623 LS--SPKQLGDILFTKLKF-----PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           +   SPKQL  +L  K K      P G  +   +  T+ QD+E +        K +LE R
Sbjct: 237 VDPLSPKQLASLLTKKFKLNLPKTPKGNVSTDDKALTSYQDVEPV--------KLVLEIR 288

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           +L KI     + L  H+  +  RV+  +     +TGR++S  PN+QNI       + +R 
Sbjct: 289 KLKKIADKLKE-LKEHL--KNGRVYPEFKQIGAVTGRMSSAHPNIQNIH------RDMRG 339

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F +      + +D+SQIELRI A   K   +   F+   D+HR  A+ + G   E+++ 
Sbjct: 340 IFKAEEGNTFVISDFSQIELRIAAEYVKDPLMLDAFKKGKDMHRYTASVVLGKKEEEITK 399

Query: 796 QMRRHAKTINFSIIYGISP------FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           + R+ AK INF +IYGIS        +L   + I   EA    +R+F  F    E+ ++ 
Sbjct: 400 EERQLAKAINFGLIYGISAKGLAEYAKLGYGVEISLEEAQVLRERFFKNFKAFKEWHDRV 459

Query: 850 KNFVRQNGYVE--TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           K  +++ G V+  T+ GRR   +  N             A+N PIQG+ AD+ + A++  
Sbjct: 460 KKELKEKGEVKGHTLLGRRFSANTFND------------AVNYPIQGTGADLLKLAVLLF 507

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR-VPLKVNI 966
             +L+   +  K++  +HDE+V E  +E+     +I+  SM+ A   KI L+ VP++V  
Sbjct: 508 DANLQKKGIDAKLVNLVHDEIVVECEKEKAEEVKEILEKSMKTAG--KIILKEVPVEVES 565

Query: 967 KVSNNWQEE 975
            ++  W ++
Sbjct: 566 VINERWTKD 574


>gi|157692705|ref|YP_001487167.1| 5'-3' exonuclease [Bacillus pumilus SAFR-032]
 gi|157681463|gb|ABV62607.1| 5'-3' exonuclease [Bacillus pumilus SAFR-032]
          Length = 295

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 154/268 (57%), Gaps = 25/268 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPL----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           H+ LVDG + ++R+FYAT +    +   H G+P N + G+   L   +Q        +H 
Sbjct: 4   HVLLVDGMALLFRSFYATAVHRNFMINDH-GVPTNGVNGYLKHLLTAVQTFE----PTHI 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + T+RNE++ DYKANR + P  L+PQ  L + AT+  GI  I ++GFEADD I
Sbjct: 59  VSCWDMGSQTYRNELFQDYKANRGEAPVELIPQFDLAKEATEELGIVNIGLKGFEADDCI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIK-----KWGIP 175
            T   + +KE   VT+++ DKDL+Q+++    +   + ++ I + +H  K     + GI 
Sbjct: 119 GTLAALYQKEA-RVTVLTGDKDLLQILNEQVTV--ALMQKGIGNYKHYTKALFEEEMGIS 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI---KQKKRREN 232
           P+ ++ ++AL GD+ DN PG+ GIG KTA   +Q Y  ++ +L N  ++   +QKK +  
Sbjct: 176 PKALIDMKALMGDASDNYPGVKGIGEKTALKFIQTYKTIDGLLENVHKLTAAQQKKMQAG 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLE 260
           +    E  +LSR L  ++ DVP++ P++
Sbjct: 236 L----EDLQLSRLLAEIKCDVPLSCPID 259


>gi|71668117|ref|XP_820999.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70886365|gb|EAN99148.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 148/289 (51%), Gaps = 19/289 (6%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK------------IRRAFISPPTKKLI 746
           +H  +    T TGRL+ +EPNLQN+P    +                RR F  P    L+
Sbjct: 632 LHPNFVQEGTDTGRLSCVEPNLQNLPRSKVIADNDNSEPYEAEMATFRRCFAVPIGLTLL 691

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           S DY QIELR++AH++  T L     N+ D+HR +A  IF      VS + R  AK + F
Sbjct: 692 SVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIF--RKSPVSVEERTLAKRVVF 749

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            ++YG  P  LATQ+ +P   A   +  +   +P I  Y  +  +  R +G+V T+ GR 
Sbjct: 750 GMLYGAGPRTLATQMGVPMERALHVMSLFKASYPQIERYQRRVIDQCRTDGFVRTMTGRI 809

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLATKMLLQIH 925
               +IN    + R   ER A N+ IQGSAAD+ +  M++V +  L+ +    ++L QIH
Sbjct: 810 RSLPDINDRVMAKRMYAERQAFNSVIQGSAADVMKLGMLAVERDVLQLYNGDVRLLAQIH 869

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DE+V  VP  ++     ++  SM  A    ++L VPL+V +++  +  E
Sbjct: 870 DEIVLSVPTHKLREVVPLVSRSMMHA----VSLLVPLRVTVRIGQSLGE 914


>gi|226312621|ref|YP_002772515.1| 5'-3' exonuclease [Brevibacillus brevis NBRC 100599]
 gi|226095569|dbj|BAH44011.1| putative 5'-3' exonuclease [Brevibacillus brevis NBRC 100599]
          Length = 292

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/273 (34%), Positives = 145/273 (53%), Gaps = 13/273 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M     + L+DG SF++RAFY +       +   G+  NA+ GF  M+    + +R    
Sbjct: 1   MSDSGKVLLIDGMSFLFRAFYGSAWGGAYRQTSTGVYTNAVYGFTKMMLDYAELTRP--- 57

Query: 58  ASHFAVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
            SH  V +D  +     R++ Y  YK+NR   P+ L+PQ  LV+  T AF +P +   GF
Sbjct: 58  -SHLVVGWDVASRESLVRSQWYDGYKSNRQAAPDELIPQFDLVKEVTDAFSVPNLGCPGF 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIKKW 172
           E DD++ T +    +EG  V I + D D +QL+S       L +  K E  +   ++   
Sbjct: 117 EGDDVLGTLSTRLSEEGHEVIIATGDYDSLQLISERVSVKILKNGGKHEHYNPASLLALR 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           GI PE++V ++AL GD+ D IPG PGIG KTA  L+ E+G+L+N+ +N +    K R + 
Sbjct: 177 GITPEQVVDVKALMGDASDCIPGCPGIGEKTATKLITEHGDLDNLYVNLANCTPKMRSK- 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           + E  +   LSRKL  +  DVP+   LE  + E
Sbjct: 236 LEENRDQVYLSRKLATIIRDVPVEYALEDALWE 268


>gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C]
 gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C]
          Length = 1023

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 167/318 (52%), Gaps = 14/318 (4%)

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI------P 724
           +LE+ +++ +K+ +A  LP   + +   +H  Y+   T + RL++  PN+Q +      P
Sbjct: 645 LLEYSKVNTLKNNFAQKLPKLASNKDGMIHGSYNSTGTESTRLSANNPNMQQLSSKVGDP 704

Query: 725 IKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            + D    I+R F +      ++  DYS +E+RIL  IAK   + Q F N  D+H   A+
Sbjct: 705 RRFDYKYPIKRLFRTRFEGGGMLQLDYSALEMRILGLIAKDKAMTQAFINGEDMHEATAS 764

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            ++ +  + V   MR+ AK++NF I YG SPF +A +L +   EA    + YF   P I 
Sbjct: 765 LVWKLPKDNVPKDMRQRAKSVNFGIAYGESPFSIAPKLGVTVEEAERIFEEYFASKPSIK 824

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           ++IE+T  F ++ GYVET+ G R    +  S    + N   R ++N  IQG+ A +T  +
Sbjct: 825 QFIEETHQFAQRYGYVETLQGHRRLLRDSFSKDKKVFNGAMRKSVNTIIQGTGAYLTNLS 884

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI------- 956
           M+ + + +  H   +++++ +HD LV + P +E+   +++  + ME   +  +       
Sbjct: 885 MVYIDEYIRKHNKRSRIVITVHDSLVIDCPRDEVDEMAKVAKYIMENLPIDFLMIEWEGK 944

Query: 957 NLRVPLKVNIKVSNNWQE 974
            +R P+  ++++  N+ +
Sbjct: 945 EMRYPIVADVEIGENYND 962


>gi|194246473|ref|YP_002004112.1| DNA polymerase I [Candidatus Phytoplasma mali]
 gi|193806830|emb|CAP18259.1| DNA polymerase I [Candidatus Phytoplasma mali]
          Length = 295

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 162/294 (55%), Gaps = 20/294 (6%)

Query: 6   HLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +L LVDG++ ++R +YAT      + +   G+  NA+ GF N+L K++  S+      + 
Sbjct: 3   NLVLVDGNALMFRVYYATINANNYIMKNRKGVYTNALLGFINILEKIIAKSK-----DYI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD   +T R+ IY DYK  RP  P  L+ Q+PL++   +  GI   E  G+EADDII
Sbjct: 58  FIAFDAHHLTKRHAIYADYKKGRPPTPLTLISQIPLIKQYLELSGIKHYEQIGYEADDII 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEH-----VIKKWGI 174
            T    A K+   V I S+DKDL+QLV    T CL   +K+    +E+     ++ K+G+
Sbjct: 118 GTLAKKASKKNIKVEIFSSDKDLLQLVDENITVCL---MKKGISQVEYYNPTSLLSKYGL 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
              +M+  +++ GDS DNI G+ GIG KTA  LLQ++ NLENI  + + IK   + + IL
Sbjct: 175 NECQMIDFKSMVGDSSDNIKGVLGIGPKTATKLLQKFSNLENIFSSLNIIKPSIKDKLIL 234

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            + E    +R L+ +   VP+   L    ++D +   LI+F K +    LI ++
Sbjct: 235 -FKEKVFFNRLLLTIDLSVPLPFGLLDTKIKDVDLKELIAFYKEMNLEILIFKL 287


>gi|330802475|ref|XP_003289242.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
 gi|325080687|gb|EGC34232.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
          Length = 1200

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 173/660 (26%), Positives = 289/660 (43%), Gaps = 133/660 (20%)

Query: 421  SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK--YDKLV-LH 477
            S+ +E  FI L      D+ G   L +E L ++ +  EN    KI +N    Y   +  +
Sbjct: 537  SYIIEKYFITLI-----DNVG--GLVEEKLKFMVEILENGLIKKISYNCSDGYKPFIKQY 589

Query: 478  RYGISMRGFEDIMLMSYVL--DSGRSSHDIASIAQKWLSYTRKEILKS----------RK 525
             Y   +  F DI + +++L  D G + +    + +    Y + E +K+          + 
Sbjct: 590  PYMKPINSF-DIKIAAWLLNSDGGNNGYSFEKVQE----YGKDESIKTIQNISNRNIMQN 644

Query: 526  SSIPIDKISDSQVQEHAIENSNV---------ILQLWLLLRPKLIVEKLLHVYERLDKPM 576
             S  I K+ + +  E + EN+N           L+++L+L+  L+ +K L      +  +
Sbjct: 645  QSEKIKKLINEE-NEFSKENTNYGSFSQDIVYSLKIYLVLK-NLLYDKDLSYNFIEEMSV 702

Query: 577  IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT- 635
            + ++S+ME+ GI ++  +L Q    + +   +L E   D      N  S  Q+  +++  
Sbjct: 703  VSLISKMELYGILLETKILNQYKKLLDEKSANLCEYFRD--NNLLNPRSIPQVTKVIYQD 760

Query: 636  -KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY-------ADS 687
             KLK P    TK    K +  +++ +N      I N+L +R L KI  TY       ADS
Sbjct: 761  LKLKLPHPPPTKVD--KKSLNEIKALNPNQEEFINNLLIYRNLEKINKTYISAYLELADS 818

Query: 688  LPN--HINKRTQRVHTFYSL----ASTMTGRLASLEPNLQNIPIKTDLGQ---------- 731
              +  H N+       F         T TGRL+S  PN+QN+   T +            
Sbjct: 819  YYDKFHQNQNESNKKAFIKCDWLQCGTSTGRLSSCNPNMQNVCRNTSIISFDDEEDQASS 878

Query: 732  ----------------------------------KIRRAFISPPTKKLISADYSQIELRI 757
                                               IR AFIS     +++ DY+QIELR+
Sbjct: 879  QIDDLFLMTHIEDDQNQNQNHNQNQNQNQNQETINIRDAFISRDGYTMLAYDYNQIELRV 938

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            ++H +    L   F N+ D+ R +A+++    I  V+   R   K + + I+YGI P  L
Sbjct: 939  MSHFSNDKHLINYFNNNQDVIRRMASKLLNKEINDVTTDEREKTKRVVYGIMYGIGPQSL 998

Query: 818  ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG-YVETIFGRRIHYDEINSPK 876
               L+I  S A   I  ++  FP I  +I  TKN ++QN   V TI GR     EI   K
Sbjct: 999  GKLLKISTSAAELLINNFYKEFPQISSFITTTKNSLKQNDPEVRTISGRIRKLGEI---K 1055

Query: 877  SSIR-NINERAAINAPIQGSAADITRRAMISVHKSLED------------------HKLA 917
            +S   +I +R ++N  IQGS+ADI +++M+ ++    D                  ++++
Sbjct: 1056 NSFDISIAKRRSVNTIIQGSSADIIKKSMVKINNFFGDICSIFNNNNNNNNSNNNNNQIS 1115

Query: 918  TKMLLQIHDELVFEVP-----EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             + LLQIHDEL+FEVP     E  +    + ++ S+ K      NL+V LK ++K  + W
Sbjct: 1116 PRFLLQIHDELIFEVPTFLIEEHRVDLYIKYLMESVSK----DFNLKVDLKTSLKSGHRW 1171


>gi|261856641|ref|YP_003263924.1| 5'-3' exonuclease [Halothiobacillus neapolitanus c2]
 gi|261837110|gb|ACX96877.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Halothiobacillus neapolitanus c2]
          Length = 324

 Score =  157 bits (397), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 98/271 (36%), Positives = 148/271 (54%), Gaps = 21/271 (7%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI-------ASH 60
           +L+D  + I+RA++         D  PV A+ GF + L  LL++   ++I       A H
Sbjct: 15  WLIDSHAQIWRAWHGAEKTLVDADDQPVGALQGFADALLTLLESVFDQNIQPSVTPHAEH 74

Query: 61  FAVI---FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             VI   FD P   +FR  IYP YKA+RP  P  L  QLP  R   +A G+ AI+  G+E
Sbjct: 75  GPVIVCTFDAPCNRSFRQTIYPAYKAHRPPAPAELTAQLPRCRALAEAAGLCAIDHPGYE 134

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      K   AVTII+ DKDL QL+ P    ++ ++++ +    V + +G+ P
Sbjct: 135 ADDVIGTLVQRLRKRNRAVTIITGDKDLAQLLGPDDRWFNPMRQKVLAYGDVERHFGVKP 194

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ 230
           +++    ALTGD  DNIPG+PGIG + A  LL+++G ++ I  N + +   K R      
Sbjct: 195 QQIADWLALTGDVSDNIPGVPGIGPRIAGNLLKKHGTIDGIYANLAAVYGMKFRGAPRVQ 254

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           + + E+    RLSR+L    T +  T+P+EH
Sbjct: 255 KLLAEHESLVRLSRQL----TGIVCTLPIEH 281


>gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group]
          Length = 1028

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 151/309 (48%), Gaps = 27/309 (8%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            + I+ +  R+H   ++ +T TGRL++  PNLQN P       KIR+AF++ P   LI AD
Sbjct: 717  DRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNTLIVAD 775

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796
            Y Q+ELRILAH+     + + F+   D H   A  ++      V  +KV     PQ    
Sbjct: 776  YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 835

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+    +   EA D +K ++     + 
Sbjct: 836  KPPVPLLKDTFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWYRDRKEVS 895

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             + +K K    +   V T+ GR   +  +       +   ERAAINAP QGSAAD+   A
Sbjct: 896  AWQKKQKALALEKCEVYTLLGRSRQFPNMTHAGPGQKGHVERAAINAPGQGSAADVAMCA 955

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M+ + ++    +L  ++LLQ+HDE++ E P E    A  I+V  M K       L+V L 
Sbjct: 956  MLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKSIVVECMSKPFYGTNILKVDLA 1015

Query: 964  VNIKVSNNW 972
            V+ K + +W
Sbjct: 1016 VDAKYAKSW 1024



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 43/194 (22%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS--- 502
           +++L     FFE+    K+ HN  +D  V+   GI + GF  D M ++ + DS R +   
Sbjct: 327 RDVLMEFAPFFEDPSIKKVWHNYSFDNHVIENCGIKVAGFHADTMHLARLWDSSRRADGG 386

Query: 503 --------------------HDIASIAQKWLSYTRKEILK--SRKSSIPIDKISDSQVQE 540
                               H    ++ K + + RK++ K  S   +I I+ +   Q ++
Sbjct: 387 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTI-FGRKKVRKNGSEGKTISIEPVEKLQRED 445

Query: 541 HAIE------NSNVILQLWLLLRPKLIVEK----------LLHVYERLDKPMIDVVSQME 584
             +       +S   L+L+  L+ KL  ++          +   YE   +P   ++ +ME
Sbjct: 446 RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKME 505

Query: 585 ITGIQIDQDLLKQV 598
             G+ +D+  L ++
Sbjct: 506 TEGMLVDRAYLSEI 519


>gi|89099826|ref|ZP_01172698.1| hypothetical protein B14911_06883 [Bacillus sp. NRRL B-14911]
 gi|89085384|gb|EAR64513.1| hypothetical protein B14911_06883 [Bacillus sp. NRRL B-14911]
          Length = 300

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 149/282 (52%), Gaps = 35/282 (12%)

Query: 1   MQKENH--LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  EN   L LVDG + ++RAF+AT +  +      G+P NAI GF    +  + + +  
Sbjct: 1   MMNENKPSLLLVDGMALLFRAFFATAVTGQFMINSKGVPTNAIQGFLKHFFTAVSSFK-- 58

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H AV +D  + TFR E++  YKANR + P  LLPQ  LV+ A +A  IP I + GF
Sbjct: 59  --PTHVAVCWDMGSKTFRTEMFSGYKANRSEAPIELLPQFDLVKEAVEAMDIPNIGLAGF 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------------YDTVKEE 161
           EADD I T     + E   V+I++ D+D++QL+     +               DT  EE
Sbjct: 117 EADDCIGTIARNLQPEA-RVSILTGDQDILQLLDKDISVILLKKGFGNYLVHTADTFYEE 175

Query: 162 KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
           K          GI P +M+ L+A  GD  DN PG+ GIG KTA  LLQ++ +++ ++ N 
Sbjct: 176 K----------GITPRQMIDLKAFMGDPSDNYPGVKGIGEKTALKLLQQFEHVDGVIENL 225

Query: 222 SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
            ++  K ++  I E  E   LSR+L  ++ DVP+   L+  +
Sbjct: 226 DKLT-KAQKAKIEEGLEMLHLSRQLAEIKCDVPVQCVLDDAV 266


>gi|21672683|ref|NP_660750.1| DNA polymerase I [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008437|sp|Q8K9D0|EX53_BUCAP RecName: Full=5'-3' exonuclease
 gi|21623322|gb|AAM67961.1| DNA polymerase I 3'-5' exo domain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 287

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 157/290 (54%), Gaps = 18/290 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQ---NSRKESIAS 59
           K+  + +VDGS ++YR+++     +   +  P  AI G    +  +L    NS+K     
Sbjct: 5   KKKPIIIVDGSLYLYRSYFTFQNFNSNEEN-PSGAIYGMLKTIQNILNKNYNSKK----- 58

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEAD 118
              +IFD     FRN I+ +YK+NR  +P  L  Q+ PL ++  +  GI  + I G EAD
Sbjct: 59  -IIIIFDSSKKNFRNTIFKEYKSNRSAMPNKLYVQIQPLFKIL-EEIGIKTLSILGIEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           DII +  Y  E++G  V I+S DKD++QL++    + +  K   +  E + +K+GI P++
Sbjct: 117 DIIGSLAYKLEQKGEQVLIVSHDKDMIQLITDNINVLNISKNSILTPEKIQEKYGIYPKE 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------N 232
            + L AL GDS DNIPG+P IG KTA  LL+++ N++NI  N  +I+    R        
Sbjct: 177 FIDLLALMGDSSDNIPGVPKIGIKTALFLLKKFSNIKNIYNNIEKIQSLPFRNAKNAAIQ 236

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
           +  Y +TA LS +L  ++ DVPI I  E + L+     +L + ++   F 
Sbjct: 237 LKNYKKTAFLSYQLAKIKLDVPINITSEEITLKKTCFKKLSNLIRWYSFN 286


>gi|322383749|ref|ZP_08057500.1| 5'3'-exonuclease-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151961|gb|EFX44904.1| 5'3'-exonuclease-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 292

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 158/289 (54%), Gaps = 14/289 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           K++ L LVDG + ++RA+YA+     + R  +GLP NA+ GF     +   ++      +
Sbjct: 6   KQDSLLLVDGMALLFRAYYASAYSGYMKRTSEGLPTNAVYGFV----RYFMDAIHTFAPT 61

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H A  +D  + TFR+E +  YKANR + PE L+PQ  LV+    +FG+P I   G+EADD
Sbjct: 62  HVACCWDMGSKTFRSEKFNAYKANRAEAPEELIPQFSLVKEVVDSFGVPNIGASGYEADD 121

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP 175
            I T   +  KE   + I++ D D++QL+     +    K        + E ++++  + 
Sbjct: 122 CIGTLARLFGKE-MDIRILTGDHDMLQLIDDRVHVIIMKKGMSNYMVYNPEVLLEEKQLT 180

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P ++V ++A  GD+ DN PG+ GIG KTA  L++EYG++E +L N + +  K  R  I  
Sbjct: 181 PAQVVDVKAFMGDTADNYPGVKGIGEKTAVKLIREYGSVEGVLDNLNEL-TKGVRSKIEA 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
             E   LSR+L  ++ DVP++  L+   L   +  R+ +  + LEF  L
Sbjct: 240 ELEMLHLSRELARIQCDVPVSCLLDE-CLWSIDKLRVQNKFEELEFGGL 287


>gi|326919514|ref|XP_003206025.1| PREDICTED: HAUS augmin-like complex subunit 3-like [Meleagris
            gallopavo]
          Length = 1077

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 158/291 (54%), Gaps = 21/291 (7%)

Query: 703  YSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLIS 747
            ++   T+TGRL+S  PN+Q I   P++    Q I            R  F+S      ++
Sbjct: 778  WNQTGTVTGRLSSKHPNIQGISKHPVRIKKKQYIKGKEEEIVTISPRALFVSKKGYTFLA 837

Query: 748  ADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            AD+SQIELRILA ++    L ++F+   + DI   +A++  G+  E+V    R  AK I 
Sbjct: 838  ADFSQIELRILADLSAEPELLKLFQEPETADIFTSLASQWKGIPSEQVKQTDREQAKRIV 897

Query: 806  FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
            +S++YG    RLA  L I   EA+ +I+ +  ++  +HE+ +KT    +  GYV +I GR
Sbjct: 898  YSVVYGAGKERLAECLGITPLEASCFIESFMQKYKKVHEFTKKTIGQCQNKGYVVSIMGR 957

Query: 866  RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLATKMLLQI 924
            +     I+S    +R   ER A+N  +QGSAAD+ + AM+ +  S +    L  +++ QI
Sbjct: 958  KRLLANIHSQDYKLRTQAERQAVNFVVQGSAADLCKMAMVEIFTSVVVSPTLTARLIAQI 1017

Query: 925  HDELVFEVPEEEITTASQIIVHSME---KACLPKINLRVPLKVNIKVSNNW 972
            HDEL+FEV + +I   S ++  +ME   +    ++ L+VPLKV +    +W
Sbjct: 1018 HDELLFEVEDSQIQEFSALVKRTMESLQQTTALEVPLKVPLKVLLTTGKSW 1068


>gi|255087648|ref|XP_002505747.1| predicted protein [Micromonas sp. RCC299]
 gi|226521017|gb|ACO67005.1| predicted protein [Micromonas sp. RCC299]
          Length = 953

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 210/448 (46%), Gaps = 62/448 (13%)

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL--SGEKFNLSSPKQ 628
           R +  +   + QME  G+  D   ++    ++ + L  +EE+       G + NL+SP+Q
Sbjct: 504 RTEGKVAAALGQMEHVGLGFDPSAVRAAVGDLRRKLAGIEESAAAAMPDGARVNLASPQQ 563

Query: 629 LGDILFTKLKFP---SGAK--TKTGQWKTTAQDLEQINCGD---NPIIKNILEWRQLSK- 679
           + + L+  LK P   S A+   KT Q  T    L  +   D   +P+   +LE+R +SK 
Sbjct: 564 VAEALYGTLKLPPPSSNAQQGAKTAQLTTKDDALRSLR--DKRLHPLPGLVLEYRAVSKT 621

Query: 680 --IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ-KIRRA 736
             + ++YA         R +R+   ++   T TGRL+S  PN+Q +  K + G+  +RRA
Sbjct: 622 IAMCNSYASM------ARGKRLRCDWNNTRTATGRLSSTNPNIQAV-GKDETGEFSLRRA 674

Query: 737 FISPPTKKLISADYSQIELRILAHIA-----------KITPLYQVFENSLDIHRMVAAEI 785
           F +PP K L++ADYSQIELR+LAH+A           +IT    VFE   +  R    E 
Sbjct: 675 FSAPPGKVLLAADYSQIELRMLAHLAGDRGLVALLRRQITDGGDVFERIWNAGRGAPPET 734

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
                  V+ + R  AK   + ++YG     LA +L      A   I  +F  FPG+  +
Sbjct: 735 ------PVAKEDRDRAKRTVYGLLYGQGKTGLAEKLGCTGDVAQGLINAFFRAFPGVRAF 788

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM- 904
           + +TK   R    V    GR        S     R   ER A+N+ IQGSAAD+ + AM 
Sbjct: 789 VTRTKERARVEKRVVLPSGRHRPLPGFASADQRERAGAERKAVNSLIQGSAADLMKIAMC 848

Query: 905 --------ISVHKSLEDHK--------LATKMLLQIHDELVFEVPEEEI--TTASQIIVH 946
                   +    +  +H         L  +++ QIHDEL+FE  +       A+Q++  
Sbjct: 849 RWLAAASPVGFEPTTTEHADVASTAATLPARLVAQIHDELLFECEDSPTAVRAAAQVVAA 908

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME+A +P++ +  P KV+  V   W E
Sbjct: 909 CMERA-VPQLAVPTPAKVS--VGRTWAE 933


>gi|119475842|ref|ZP_01616194.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2143]
 gi|119450469|gb|EAW31703.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2143]
          Length = 297

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 147/258 (56%), Gaps = 12/258 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+D S +I+RA+Y  P      +G  VNA+ G+   L K L +S+ +    + AV +D
Sbjct: 5   VYLIDASIYIFRAYYGIPDEWHDSNGNSVNALFGYTQFLLKFLTSSQPQ----YLAVAYD 60

Query: 67  YP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                 FRN+IYP YK +R    E L  QL   +  T+ FGI ++    +EADDIIAT  
Sbjct: 61  ESLGSCFRNDIYPAYKKSRNLPDESLSYQLTACKGLTEIFGISSLASDRYEADDIIATLA 120

Query: 126 YIAEKEGFAVTIISTDKDLMQ-LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             A+++G  + ++S DKDL Q L+  +  L+D   + KID +     +G+ PE++    A
Sbjct: 121 GRAQRDGHNIVVVSKDKDLGQLLLKESDYLWDFAGDRKIDRDMFHGHFGVWPEQLEDYLA 180

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL------EYAE 238
           L GDS+D+IPG+PGIG KTA+ LL+++ +++ +L NA  + +   R   +      +Y +
Sbjct: 181 LVGDSVDDIPGVPGIGKKTASSLLEKFSSIDRLLHNADGVAESGVRGAAMIINKLEDYRD 240

Query: 239 TARLSRKLVMLRTDVPIT 256
              ++++LV L  +VP  
Sbjct: 241 QMEMAKQLVRLDQNVPFA 258


>gi|229544339|ref|ZP_04433398.1| 5'-3' exonuclease [Bacillus coagulans 36D1]
 gi|229325478|gb|EEN91154.1| 5'-3' exonuclease [Bacillus coagulans 36D1]
          Length = 299

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 147/269 (54%), Gaps = 17/269 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K  HL L+DG + ++RAFYAT +  +      G+P N + GF   L    +N +    
Sbjct: 1   MNKRPHLLLIDGMALLFRAFYATAVTGQFMVNSKGMPTNGVQGFLRHLLLAAENKK---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV +D  + TFRN++Y +YKANR   P  ++PQ  L +   +AF IP + + G+EA
Sbjct: 57  PTHVAVCWDMGSKTFRNDLYGEYKANRDVPPVEMIPQFDLAKETVEAFEIPNVGVAGYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD + T +   + E   ++I++ D+D++QL+     ++   K     +       + ++G
Sbjct: 117 DDCLGTLSSRFKDEA-DISILTGDRDILQLLDDHVEVHLLQKGFGNYKTYTKAAFMDEYG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKRRE 231
           + P + + ++AL GD+ D  PG+ GIG KTA  L+  +GN+  IL +   +   Q+K+ E
Sbjct: 176 VTPRQFIDVKALMGDASDGYPGVKGIGEKTAFKLVSRFGNISGILGHLGELTPSQQKKIE 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLE 260
             L   E   LSRKL  +R DVP+   LE
Sbjct: 236 AGL---EMLHLSRKLAEIRCDVPVAFSLE 261


>gi|304404902|ref|ZP_07386562.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Paenibacillus
           curdlanolyticus YK9]
 gi|304345781|gb|EFM11615.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Paenibacillus
           curdlanolyticus YK9]
          Length = 294

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/275 (35%), Positives = 144/275 (52%), Gaps = 16/275 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           MQ  N + +VDG + ++RAFYAT     + +   G+P NA+ GF   L+  +        
Sbjct: 1   MQTSNKVLIVDGMAVLFRAFYATSYSGYIRKTSTGIPTNAVYGFIQYLYDAINTFN---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH    +D  + TFR E YP YK NR + P  L+PQ  LV+      GIP I I G+EA
Sbjct: 57  PSHVVCCWDMGSKTFRTEQYPAYKGNRGEPPNELIPQFDLVKEVVAEMGIPNIGIVGYEA 116

Query: 118 DDIIATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-----DIEHVIK 170
           DD I T       +     V I++ D D++QLVS    +   +K+ K+     DIE ++ 
Sbjct: 117 DDCIGTLAAKLTVDHPDSEVLILTGDHDMLQLVSENVKVV-IMKKGKLNYAIYDIELLMT 175

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           +  + P +++ ++   GD+ DN PG+ GIG K+A  LL EYG++E +L N  ++  K  R
Sbjct: 176 EKQLTPLQVIDIKGFMGDTSDNYPGVKGIGEKSALKLLLEYGSIEGVLDNLEQLP-KGVR 234

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
             I    +   LSR L  +R DVPIT  L   + E
Sbjct: 235 SKIEANLDMLHLSRDLATIRLDVPITYELAECVWE 269


>gi|298707099|emb|CBJ29891.1| procaryotic DNA polymerase I [Ectocarpus siliculosus]
          Length = 485

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 154/293 (52%), Gaps = 17/293 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH--FAVI 64
           + LVDG    YR+F+  P LS   DG PV A+ GFCN + KL+     E +       V+
Sbjct: 184 VVLVDGHYITYRSFHGMPHLS-AADGTPVGALVGFCNTMNKLVVQPWAEGVERRQKVVVV 242

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++ P YK +R + PE L PQ  LVR A +A+G+  IE  G+E DD+IA+ 
Sbjct: 243 FDTGDDNFRHDLSPSYKKHRTETPEALRPQFALVRKACEAYGLETIEGPGYEGDDVIASL 302

Query: 125 TYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              A   G   VTI+S DKDL QLV+    + +    E++  E V+ K+  PP ++  L 
Sbjct: 303 ALEAVIGGATNVTIVSADKDLAQLVTRRVNMLNVYTGERLGPEEVLAKFLAPPGRLADLL 362

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETAR 241
           A+ GD  D I G  G G   AA +L ++  LE  +  I ++  K+ +  E + +  E   
Sbjct: 363 AIAGDKSDGIVGAEGYGPVKAAKVLAKHETLEAAVDEICSTISKKIEDPELVAKTREQVL 422

Query: 242 LSRKLVMLRTDVPI----------TIPLEHLILEDCNGPRLISFLKALEFTKL 284
           L+R+LV L T VP+          ++P  HL  E     RL++F++  E  +L
Sbjct: 423 LARRLVELCTTVPLDRRTGLKSLASVPTFHLEGEGA-AERLLAFMRRFEMDEL 474


>gi|47215759|emb|CAG05770.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 462

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 200/403 (49%), Gaps = 30/403 (7%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  +Y  ++  MI V++ ME   I +D++ LK+ S  +   +  LE+  +  +GE F ++
Sbjct: 10  LWDLYTDMELNMIPVLAVMESHHIHVDKEALKRTSDLLGTKMKQLEQEAHRAAGEIFLIT 69

Query: 625 SPKQLGDILFTKL---------KFPSGAKTKTGQWKTTAQDLEQI-NCGD-NPIIKNILE 673
           S  QL  +LF +L         K P     +    +   Q L+++    D +P+ K ILE
Sbjct: 70  SNTQLRAVLFERLRLHQQCENKKLPKTLNKQQSTSEAAVQYLKRLLQLQDLHPLPKIILE 129

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE-------PNLQNIPI- 725
           +RQ+ KIKST  D + + +  +  +      L  T   R+   E       P    IP  
Sbjct: 130 YRQVHKIKSTSVDGILSCMRNKNFQALPRQPLQITKQQRVQGKEEVVVKVHPREMFIPQE 189

Query: 726 --------KTDLGQKI--RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-S 774
                   K ++  K+  R  FI       ++AD+ Q+ELR+LAH +    L ++F +  
Sbjct: 190 GWTFVAAGKEEVVVKVHPREMFIPQEGWTFVAADFCQVELRLLAHFSSDPELLRIFNHPQ 249

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+  M+A++  G++  +V+ + R HAK I +S++YG    RL+  L +   +A+ +   
Sbjct: 250 SDVFTMLASQWKGLSQSEVTSEDREHAKRIVYSVVYGAGRERLSGILGVSAKQASQFQDS 309

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           +   +  +  +I+KT     Q G V ++ GRR     I+    ++R   ER A+N  +QG
Sbjct: 310 FLRAYKDVQAFIQKTIQQCHQQGCVLSLMGRRRTLPNIHLSDWAVRMQAERQAVNFVVQG 369

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           SAAD+ + AMI +   +     + ++L Q+HDEL+FEV + ++
Sbjct: 370 SAADLCKMAMIRIFNLVSSSSCSARLLAQLHDELLFEVEDNQV 412


>gi|197294838|ref|YP_001799379.1| DNA polymerase I [Candidatus Phytoplasma australiense]
 gi|171854165|emb|CAM12158.1| DNA polymerase I [Candidatus Phytoplasma australiense]
          Length = 676

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 161/289 (55%), Gaps = 18/289 (6%)

Query: 6   HLFLVDGSSFIYRAFYATP-----LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           HL LVDG+S ++RA++AT      LL  K  G+  NA+  F  M  K+L+ ++     ++
Sbjct: 3   HLVLVDGNSLVFRAYHATANNGKKLLQNK-KGVYTNALLSFIKMFEKILEQTK-----NY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    T R+++Y +YK  RP+ P+ L+ Q+PL++      G+       FEADDI
Sbjct: 57  ILVAFDTHHPTKRHQMYDNYKKGRPETPQELIDQIPLIKKYLTLKGVKHHFQAEFEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIP 175
           I T   +A  +   V+I S+D+DL+QLV   T +Y   K  K+ I+H     +++++G+ 
Sbjct: 117 IGTLAKMASNKNIKVSIYSSDQDLLQLVDTNTSVYLIKKGLKL-IKHYNPKTLLEEYGLK 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +M+  +AL GDS DNI G+ GIG KTA  LLQ Y NL+N+L +   IK    +E I  
Sbjct: 176 EYQMIDYKALMGDSSDNIKGVAGIGPKTAKNLLQTYDNLDNLLSHLDAIK-PSLKEKINN 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
             E  +LS+ L  + T VP+   LE   ++  +   L  F + ++F +L
Sbjct: 235 CMEDLKLSKILTTIDTKVPLPFELEQTEIKHMSSFELQDFYQEMDFKRL 283


>gi|213421456|ref|ZP_03354522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 236

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 143/230 (62%), Gaps = 5/230 (2%)

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ML SY+L+S    HD+ S++ +WL +   T ++I    K+ +  ++I+  +   +A E++
Sbjct: 2   MLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDA 61

Query: 547 NVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           +V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID  +L + S EI+  
Sbjct: 62  DVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLR 121

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T+ + LE++   D 
Sbjct: 122 LAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELAL-DY 180

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S
Sbjct: 181 PLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 230


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 151/302 (50%), Gaps = 28/302 (9%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+HT  ++ +T TGRL+S  PNL N P       KIR++FI+    KLI ADY Q+ELR+
Sbjct: 558 RIHTSINI-NTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRV 616

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-----------------SPQM--- 797
           LAH+ K   +   F    D H      +F    E++                 +P +   
Sbjct: 617 LAHMTKCKAMIDAFLKGGDFHSRTVITMFPHIQEEIDKGELLIEWDKSKGKAPAPLVKDK 676

Query: 798 ----RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
               RR AK +NFSI YG +    A   +    EA   I  +F +   + ++    +   
Sbjct: 677 YAAERRKAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQRKEVEQWQYNVRMIA 736

Query: 854 RQNGYVETIFGRRIHYDEINSPKS-SIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
           +   + +T+ GR  + ++    ++ S  N   RAAIN PIQG AADI   AM+ ++K+  
Sbjct: 737 KNQFFTQTLLGRYRYLEKYFQQQTRSYINHGLRAAINTPIQGGAADIVIAAMVKIYKNQS 796

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              L  K+LLQ+HDEL+ E PEE    A +I+   ME     +I L +PL+V+ K+ NNW
Sbjct: 797 LKDLGYKLLLQVHDELILEGPEENAQEALKIVKELMENPF--EIQLELPLEVDAKIGNNW 854

Query: 973 QE 974
            E
Sbjct: 855 YE 856



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506
           +++   K +FE+E  LKI HN  +DK +    GI++RG F D M M+ +LD  +   +  
Sbjct: 126 DLIMLFKDYFEDEKILKIWHNYGFDKHIFGNNGINVRGFFGDTMHMARLLDPSKQPQEY- 184

Query: 507 SIAQKWLSY 515
           S+A+  L+Y
Sbjct: 185 SLAKLSLAY 193


>gi|225022624|ref|ZP_03711816.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944532|gb|EEG25741.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 893

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 148/289 (51%), Gaps = 15/289 (5%)

Query: 15  FIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFR 73
             +RAFYA P        G   NAI GF +ML  LL + +     +H AV FD    TFR
Sbjct: 1   MAFRAFYALPTEKFTTSTGQATNAIYGFLSMLATLLHDEQ----PTHVAVAFDVGRTTFR 56

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
            E++PDYKA R + P   + Q+P+++    A GI  IE   +EADDIIAT    A+  GF
Sbjct: 57  TEMFPDYKAQRDETPPEFISQIPILKNLLTALGITTIEKPNYEADDIIATLATTAQPLGF 116

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
              I++ D+D +QLV+ TT +   +K      +   + V  K+G+ PE+     AL GD 
Sbjct: 117 ETLIVTGDRDSLQLVNNTTTVLYPMKGVSVIHRFTPQAVQDKYGLTPEQYPDFAALRGDP 176

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DN+P IP +G KTA   + ++GNL N+L NA  IK      N+ E  +  +L+R+L  +
Sbjct: 177 SDNLPSIPKVGEKTATKWIVQHGNLTNLLNNADTIKGVV-GTNLRERIDQVKLNRQLTEM 235

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEF-----TKLINRVATTYD 293
             ++ +T     L L+  N   L      LEF     TK++     T D
Sbjct: 236 VKNLDLTHTPPELKLQPVNTETLTEDFNNLEFGTTLRTKILKARGVTVD 284



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 27/196 (13%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K  H+ K    +L   GI++ G   D  L +Y+L+ G+ ++D+ +  Q+ L  T  EI +
Sbjct: 366 KFLHDAKTTYHMLAGRGITLGGIAHDTALAAYLLNPGQRTYDLKTTYQRHLHRT-LEITE 424

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-------KLIVEKLLHVYERLDKP 575
           + + S+ +D           I N+N ++     +         KL     L +Y  L+ P
Sbjct: 425 TGQLSL-LD-----------ITNTNTLITAAAAILELAATLPTKLATINELELYLDLELP 472

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN-IYDLSGE-KFNLSSPKQLGDIL 633
           +  ++++ME TGI +D   L++   +   NL++ EE     ++G+    L+SPKQL  +L
Sbjct: 473 LTTILAEMEATGIAVDIPTLEE-QLDTFTNLVTQEETAARTIAGDPNLLLTSPKQLQVVL 531

Query: 634 FTKLKFPSGAKTKTGQ 649
           F  L  P   KTK  Q
Sbjct: 532 FETLGLP---KTKKNQ 544


>gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
          Length = 761

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 144/582 (24%), Positives = 253/582 (43%), Gaps = 77/582 (13%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507
           +L  L   F +E   K+ HN  +D  +L R+G  ++G   D M   ++L+   S   +  
Sbjct: 187 VLEGLAPVFNDESIGKVLHNAIFDIAMLRRHGFDLKGVAWDTMTAMHLLNENESDRALGG 246

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE--------HAIENSNVILQLWLLLRPK 559
                L     + LK+   +       ++Q +E        +A +++ +  +L+   R  
Sbjct: 247 AGSFKLKDLAPKYLKTPADTFDALFGRNAQFKEVPLDIALVYAAKDTELTWKLYEFQRYH 306

Query: 560 LI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI----- 613
           +  +  +L  Y+ ++ P++ V+  +E  G  +D D  K+   ++ K    L + +     
Sbjct: 307 MAKIPTILDYYQTVEIPLLYVIVDLEANGYILDLDFAKEYGEKLHKRAEELRKELVAELT 366

Query: 614 -YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
            +    E  NL+S  Q+   L   +    G        K T + L+     D  II  +L
Sbjct: 367 PFHEGDEPINLNSTHQMRPALSKAI----GKDLSNMDAKKTLKPLKD----DYEIIAKLL 418

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP---------NLQNI 723
           E++ + K+  TY D+LP   N  T+R H+ ++   T+TGR +S +          N+QN 
Sbjct: 419 EYKNIVKLSGTYIDTLPTKQNPTTERWHSRFNPMGTVTGRFSSGKDEEDKTQQGFNVQNQ 478

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P       + R  F  PP K L+ AD+   E+R +A+++    L   F    D +  +A+
Sbjct: 479 P------PEARPMFGPPPGKLLVGADFKAQEIRCVAYLSGEPVLINAFLEERDPYATMAS 532

Query: 784 EIFGVNIEKV-------SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
             +    E+V         + R+  K    + +YG+S + LA  L + + EA ++ +  F
Sbjct: 533 NFYKRPHEEVYKNADGSDTKERKKMKVAWLATLYGMSDYSLADMLGVGKKEATEFKEELF 592

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRR-------------IHYDEINSPK------- 876
              P +  ++++ + FVR+NGYV      R             I Y + N PK       
Sbjct: 593 GSMPKLSAWLKENEEFVRKNGYVWADLNARKRRLPDAKLPRKNIPYGKWNDPKYDDARKH 652

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-- 934
           +S  N   R A NA +QGS++  T+  MI  H+   + K    +   +HDEL+FEVPE  
Sbjct: 653 NSRINRALRQATNARVQGSSSIQTKVTMIKAHEYCAN-KPGWALWSTVHDELIFEVPEDF 711

Query: 935 --EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             EE      I+++S     +      VP   +I+V   W E
Sbjct: 712 TWEEAQEIRDIMLNSYRWGDV------VPNGTDIEVMRKWGE 747


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 151/302 (50%), Gaps = 28/302 (9%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+HT  ++ +T TGRL+S  PNL N P       KIR++FI+    KLI ADY Q+ELR+
Sbjct: 558 RIHTSINI-NTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRV 616

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-----------------SPQM--- 797
           LAH+ K   +   F    D H      +F    E++                 +P +   
Sbjct: 617 LAHMTKCKAMIDAFLKGGDFHSRTVITMFPHIQEEIDKGELLIEWDKSKGKAPAPLVKDK 676

Query: 798 ----RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
               RR AK +NFSI YG +    A   +    EA   I  +F +   + ++    +   
Sbjct: 677 YAAERRKAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQRKEVEQWQYNVRMIA 736

Query: 854 RQNGYVETIFGRRIHYDEINSPKS-SIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
           +   + +T+ GR  + ++    ++ S  N   RAAIN PIQG AADI   AM+ ++K+  
Sbjct: 737 KNQFFTQTLLGRYRYLEKYFQQQTRSYINHGLRAAINTPIQGGAADIVIAAMVKIYKNQS 796

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              L  K+LLQ+HDEL+ E PEE    A +I+   ME     +I L +PL+V+ K+ NNW
Sbjct: 797 LKDLGYKLLLQVHDELILEGPEENAQEALKIVKELMENPF--EIQLELPLEVDAKIGNNW 854

Query: 973 QE 974
            E
Sbjct: 855 YE 856



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506
           +++   K++FE+E  LKI HN  +DK +    GI++RG F D M M+ +LD  +   +  
Sbjct: 126 DLIMLFKEYFEDEKILKIWHNYGFDKHIFGNNGINVRGFFGDTMHMARLLDPSKQPQEY- 184

Query: 507 SIAQKWLSY 515
           S+A+  L+Y
Sbjct: 185 SLAKLSLAY 193


>gi|23336563|ref|ZP_00121774.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI)
           [Bifidobacterium longum DJO10A]
          Length = 269

 Score =  155 bits (392), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 94/254 (37%), Positives = 138/254 (54%), Gaps = 14/254 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  V F
Sbjct: 14  LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IAT  
Sbjct: 70  DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179
            + +K G+   ++S D+D  QLV    T LY        D++H     +I K+ + P + 
Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 187

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    + 
Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANIDQ 246

Query: 240 ARLSRKLVMLRTDV 253
            +L+RK+  L  DV
Sbjct: 247 VKLNRKVNALVRDV 260


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 774

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 150/309 (48%), Gaps = 27/309 (8%)

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           +T+  SL   ++ ++ RVH   +L +T TGRL+S  PNLQN P       +IR+AF + P
Sbjct: 456 ATFLTSLQERVDNKS-RVHCSLNL-NTETGRLSSRGPNLQNQPALEKDTYQIRKAFEASP 513

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS------- 794
              LI ADY Q+ELR+LA +     + + FE   D H   A ++F     KV        
Sbjct: 514 GNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDFHSRTAMDMFDYVKAKVDSGEALLE 573

Query: 795 -----------------PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
                               RR AKT+NFSI YG + F L+    +   EA + +K ++ 
Sbjct: 574 WDYAKGDPPKPLVKDLFASERRKAKTLNFSIAYGKTAFGLSDDWGVTLQEAEEMLKAWYK 633

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
             P +  +  + K   R +GY  T+ GR     E  S +       ERA+IN PIQG AA
Sbjct: 634 ARPEVDVWQTQVKLTARNHGYTRTLMGRYRDLPEAKSKRQKFAKQAERASINTPIQGGAA 693

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM-EKACLPKI 956
           DI   AM  ++ + +   L   +LLQ+HDE++ E PEE    A   ++++M E      +
Sbjct: 694 DIAMMAMNKINANEKLKALGWILLLQVHDEVMLEGPEETAKEAFDEVLNNMQEPWVFGLM 753

Query: 957 NLRVPLKVN 965
              VPL V+
Sbjct: 754 KTAVPLLVD 762



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 42/227 (18%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRS------ 501
           IL   K +FEN  FLK+ HN  +D+ V+   GI ++G   D M M+ + D+ RS      
Sbjct: 82  ILQEFKAWFENPRFLKVWHNYGFDRHVMWNEGIDVQGLGGDTMHMARLQDTCRSKMAKGG 141

Query: 502 SHDIASIAQKWLSYTRKEILKS-------RKSSI--------PIDKIS-DSQVQEHAIEN 545
            + + ++    LS  RK+ +K        RK           P++ +  D + +   I+ 
Sbjct: 142 GYSLEALTADLLS-RRKQPMKELFGVHRLRKDGSEGALVDIPPVESMQRDPESRSMWIKY 200

Query: 546 SNVILQ-LWLL---------LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID-QDL 594
           S    +  WLL         ++P +  + L   Y    +P  +V++ ME  G++++ +D 
Sbjct: 201 SCYDAEGTWLLREELEKRLKMKPWIGNKNLWDYYFLHMRPFAEVLTDMERRGVRVNAKDY 260

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEK-------FNLSSPKQLGDILF 634
           L  V  +  ++ +   +   + +  K        NLSS  QL  + F
Sbjct: 261 LFNVERKAREDRVHHSKIFREWAASKIGPDGLALNLSSATQLQALFF 307


>gi|196232728|ref|ZP_03131579.1| 5'-3' exonuclease [Chthoniobacter flavus Ellin428]
 gi|196223188|gb|EDY17707.1| 5'-3' exonuclease [Chthoniobacter flavus Ellin428]
          Length = 323

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 95/294 (32%), Positives = 158/294 (53%), Gaps = 21/294 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG  ++YR+F+A   LS    G P NAI GF   + +++++ + +      A+++D
Sbjct: 3   LLLIDGHYYVYRSFFAIRELSNSR-GEPTNAIYGFIKTVRRMVKDLQPDL----GAIMWD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R  + P YK  R ++P+++ PQL  ++      G  ++ +   EADD++ TY  
Sbjct: 58  MGMPQRRVALQPAYKQQRAEMPDLMRPQLTFIQNLVPMLGFASVWLPDTEADDLMGTYAV 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---------IDIEHVIKKWGIPPE 177
            A   G  V + + DKDL QLV+    +Y T K +          + I+ V KKWG+ P+
Sbjct: 118 AARARGDDVVLATNDKDLFQLVNGNVKVYSTNKTDLAAPSDTHALLGIDAVRKKWGVEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++  + AL GD++DNIPG+ G+G K AA LL  +G+L+ +L N   +K ++ RE +    
Sbjct: 178 QIGDVLALIGDTVDNIPGVEGVGPKGAATLLNTHGSLDALLANLDAVKNERTREKLKASR 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR---LISFLKALEFTKLINRV 288
                +R++V L  D+P+  PL+ L +     PR   LI+ L+  EF  L+  V
Sbjct: 238 AQIEQNREMVRLDLDLPLPEPLDALAIR----PRWNDLIAELEKCEFKSLLAEV 287


>gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens]
          Length = 831

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 150/304 (49%), Gaps = 29/304 (9%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVH   +L +T TGRL+S  PNLQN P        IR+AF +     L+ ADY Q+ELR+
Sbjct: 528 RVHCSLNL-NTETGRLSSRRPNLQNQPALEKDQYFIRKAFRAKEGCALVVADYGQLELRL 586

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIF----------GVNIEK-VSPQ---------- 796
           LAH+A+   +   F      H   A  +F           V +EK  SP+          
Sbjct: 587 LAHVARCESMLVAFREGGCFHSRTAVGMFDHVREAVESGAVLLEKGSSPEDSDKPLVKDV 646

Query: 797 ---MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
               RR AKT+NFSI YG +   LA    + + EA D ++ ++   P +  + ++T    
Sbjct: 647 YASERRRAKTLNFSIAYGKTAHGLAKDWGVKQEEAQDMLRAWYDDRPEVEAWQKRTIADA 706

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           ++ GY  T+ GRR +  +I     +++    RAAIN PIQGSAAD+   AM+ + +S   
Sbjct: 707 KRTGYTTTLMGRRRNLPDILEKNRALQGRGARAAINTPIQGSAADVVMMAMLKIAESKTL 766

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN---LRVPLKVNIKVSN 970
             L   +LLQIHDE++ E PE+    A   +   ME A    I    L V L V+ K + 
Sbjct: 767 KDLGYTLLLQIHDEVILEGPEQHKEAALAEVTKLME-APFDGIGLDPLHVDLTVDAKTAA 825

Query: 971 NWQE 974
            W E
Sbjct: 826 TWYE 829


>gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 808

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 164/332 (49%), Gaps = 36/332 (10%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           N ++ N +E  Q + IKS               RVH   ++ +T TGRL++  P+LQN P
Sbjct: 485 NTLLSNFIEPLQGNDIKSV-----------SDGRVHCSLNI-NTETGRLSARRPSLQNQP 532

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                  KIR+AF++ P K L+ ADY Q+ELR+LAH+A    +   F    D H   A  
Sbjct: 533 ALEKDRYKIRQAFVAAPGKALVVADYGQLELRLLAHLADCKSMKAAFIAGGDFHSRTAMN 592

Query: 785 IF-----GVNIEKV--------SPQM----------RRHAKTINFSIIYGISPFRLATQL 821
           ++      V  ++V         P +          RR AK +NFSI YG +   LA   
Sbjct: 593 MYPHVREAVEKDRVLLEWEGLEKPPVPLLKDMFGSERRKAKMLNFSIAYGKTAMGLAKDW 652

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            +   EA   +  ++   P +  + ++ K    +   V T+ GR  H  +INS  S +R+
Sbjct: 653 NVKLDEAKATVDLWYSDRPEVLAWQKERKQEAHETLRVHTLLGRARHLPDINSSNSLLRS 712

Query: 882 INERAAINAPI-QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
             ERAAIN P+ QGSAAD+   AM+ ++++    +L  K+LLQ+HDE++ E P E    A
Sbjct: 713 HMERAAINTPVQQGSAADVAMCAMLEINQNARLRELGWKLLLQVHDEVILEGPLESAEEA 772

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++ SM      +  L V L V+   + NW
Sbjct: 773 KELVIKSMMYPFNGENILDVELVVDGDYAENW 804



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 104/258 (40%), Gaps = 64/258 (24%)

Query: 441 GKNTL-------TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLM 492
           GKN L         ++L   K++FE+    K+ HN  +DK +L R+GI  +GF  D M +
Sbjct: 78  GKNRLWVDVLDGGDDVLRVFKRYFEDPSIQKVWHNYSFDKHILSRHGIHPQGFYADTMHL 137

Query: 493 SYVLDSGRSSH------DIASIAQKWLSYTRKEILKSRKSSI------------------ 528
           + + DS R         ++ S  +K + Y  K   +   S                    
Sbjct: 138 ARLNDSARRGSKGGYALEVLSADRKVMDYCSKNFTEEDGSVFVGKKSMKELFGKAKLKKD 197

Query: 529 ----------PIDKIS-DSQVQEHAIENSNV----ILQLWLLLRPKL-----IVEKLLH- 567
                     P+D++  D ++++  I  S +      +L++ L+ KL      V +L H 
Sbjct: 198 GTPGKIKVVPPVDELQRDEELRDAWIHYSTLDAVCTWRLFVSLQHKLSNTPWSVAELRHK 257

Query: 568 -----VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA------EISKNLLSLEENIYDL 616
                 YE+  +P  +V+ QME  G+ +D D L  V        +IS +        Y  
Sbjct: 258 GSMYDFYEKYWRPFGEVLVQMEAYGMLVDYDHLATVEKLARAQQKISVSRFRKWAARYCP 317

Query: 617 SGEKFNLSSPKQLGDILF 634
           +  + N+ S  Q+   LF
Sbjct: 318 NAARMNVGSDAQIRQFLF 335


>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
          Length = 1000

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 135/279 (48%), Gaps = 26/279 (9%)

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQN P       KIR+AF++ P   LI ADY Q+ELRILAH+A    +   F+   D H 
Sbjct: 718 LQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHS 777

Query: 780 MVAAEIF-----GVNIEKV----SPQ-----------------MRRHAKTINFSIIYGIS 813
             A  ++      V  +KV     PQ                  RR AK +NFSI YG +
Sbjct: 778 RTAMNMYQHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKT 837

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
           P  LA   ++   EA D +K ++     +  +  K K   ++   V T+ GR   +  + 
Sbjct: 838 PVGLARDWKVSVKEAKDTLKLWYRDRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMA 897

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
              S  R   ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P
Sbjct: 898 HATSGQRGHIERAAINAPVQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGP 957

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E    A  I+V  M K       L V L V+ K + NW
Sbjct: 958 TESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 996



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           +++L     FFE+    K+ HN  +D  V+  YGI + GF  D M ++ + DS R
Sbjct: 338 RDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSR 392


>gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
 gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
          Length = 992

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/279 (34%), Positives = 134/279 (48%), Gaps = 26/279 (9%)

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQN P       KIR+AF++ P   LI ADY Q+ELRILAH+A    +   F    D H 
Sbjct: 710 LQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLADCKSMLDAFRAGGDFHS 769

Query: 780 MVAAEIF-----GVNIEKV----SPQ-----------------MRRHAKTINFSIIYGIS 813
             A  ++      V+ EKV     PQ                  RR AK +NFSI YG +
Sbjct: 770 RTAMNMYPHIREAVDEEKVILEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKT 829

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
           P  LA   ++   EA D +K ++     +  +  K K    +   V T+ GR   +  + 
Sbjct: 830 PHGLARDWKVSVKEAKDTLKLWYSDRKEVLAWQMKQKQLAHEKSEVYTLLGRSRRFPNMA 889

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
              S  R   ERAAINAP+QGSAAD+   AM+ + ++    +L   +LLQ+HDE++ E P
Sbjct: 890 HATSGQRGHIERAAINAPVQGSAADVAMCAMLEIDRNTRLKELGWTLLLQVHDEVILEGP 949

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            E    A  I+V  M K       L+V L V+ K + NW
Sbjct: 950 SESAELAKSIVVECMSKPFYGTNILKVDLAVDAKCAQNW 988



 Score = 41.6 bits (96), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 41/192 (21%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS---- 502
           ++L     FFE+    K+ HN  +D  V+  YGI + GF  D M ++ + DS R +    
Sbjct: 334 DVLMEFAPFFEDSSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGY 393

Query: 503 --------HDIASIAQKWLS----------YTRKEILK--SRKSSIPIDKISDSQVQEHA 542
                   H +  +  K L           + RK+I K  S      I+ +   Q ++  
Sbjct: 394 SLEGLTNDHRVMGVVSKELRKIGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQREDRE 453

Query: 543 IE------NSNVILQLWLLLRPKLIVE----------KLLHVYERLDKPMIDVVSQMEIT 586
           +       +S   L+L+  L+ KL  +           L   YE   +P   ++ +ME  
Sbjct: 454 LWICYSSLDSMSTLKLYESLKSKLERKPWTFDGCPRGSLYDFYEEYWRPFGAILVKMETA 513

Query: 587 GIQIDQDLLKQV 598
           G+ +D+  L ++
Sbjct: 514 GMLVDRAYLSEI 525


>gi|289550777|ref|YP_003471681.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|315658273|ref|ZP_07911145.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
 gi|289180309|gb|ADC87554.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|315496602|gb|EFU84925.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
          Length = 293

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 149/261 (57%), Gaps = 19/261 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA-SH 60
           N + LVDG + ++R FYAT L ++      G+P N + GF   ++  + +     IA SH
Sbjct: 3   NRVLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGVQGFVRHIFSAIHD-----IAPSH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV +D    TFRN++Y  YK NRP  P  L+PQ   V+     FG   I +  +EADD+
Sbjct: 58  VAVCWDMGQETFRNQMYASYKQNRPAPPNELIPQFDYVKEIATQFGFVNIGVVNYEADDV 117

Query: 121 IATY--TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI----DIEHVIKKWGI 174
           I +   TY  + E F   II+ DKD++Q ++P   ++ T K   I     +E  ++ +GI
Sbjct: 118 IGSLAQTYSDQNEVF---IITGDKDILQCINPNVEVWLTKKGFNIYNRYTLERFLEDYGI 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++ + ++A  GD+ D  PG+ GIG KTA  L++E+ ++E +L N S++ Q ++ + I 
Sbjct: 175 TPKQFIDVKAFMGDTADGYPGVKGIGEKTALKLIKEHQSVEGVLSNISKLTQGQQTK-IN 233

Query: 235 EYAETARLSRKLVMLRTDVPI 255
            + +  +LS++L  + T+VP+
Sbjct: 234 SHIDDLKLSKQLAEIYTNVPL 254


>gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 145

 Score =  154 bits (389), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/139 (50%), Positives = 100/139 (71%)

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ 
Sbjct: 4   GRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLP 63

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+  YF R+PG+ EY+E+T
Sbjct: 64  LDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMERT 123

Query: 850 KNFVRQNGYVETIFGRRIH 868
           +   ++ GYVET+ GRR++
Sbjct: 124 RAQAKEQGYVETLEGRRLY 142


>gi|190568603|ref|ZP_03021508.1| 5'-3' exonuclease family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|190560203|gb|EDV14183.1| 5'-3' exonuclease family protein [Bacillus anthracis
           Tsiankovskii-I]
          Length = 288

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +R +VPI+  LE
Sbjct: 236 ENLNISLQLAQIRCEVPISCSLE 258


>gi|145347581|ref|XP_001418242.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578471|gb|ABO96535.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 233

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 92/235 (39%), Positives = 128/235 (54%), Gaps = 12/235 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN--SRKESIASHFAVI 64
           L LVDG SF++RA+Y         +GL  N+     ++L+       S  E   +H AV 
Sbjct: 1   LILVDGLSFVFRAYYGWNARG-SGEGL-TNSAGEDTSVLYSYAHTICSLLELKPTHLAVC 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+E++ +YKANRP  PE LL  +P V    +  G+P + + G EADDII T 
Sbjct: 59  MDAKGKTFRHEMFVEYKANRPPTPEPLLELIPKVEQLVRDMGVPLLRLSGVEADDIIGTV 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--------IDIEHVIKKWGIPP 176
           +  A   GF V+I S DKD  QL+ P T +    K  K        +D    +    I P
Sbjct: 119 SRRASDAGFRVSICSPDKDFYQLLGPKTKMLKPSKSSKGDPFDPFTVDDFRAMHNNVIEP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           E+ +   AL GDS DNIPG+ G+G KTA  LL++YG++E+ L NA+ +K K+ RE
Sbjct: 179 EQFIDFLALVGDSADNIPGVEGVGPKTALALLEQYGDIESALANAANVKGKRARE 233


>gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 704

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 208/453 (45%), Gaps = 62/453 (13%)

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL----------LSLEE 611
           +++++ V  R  +P++     ME+ G+QID    K++ A + +            L ++E
Sbjct: 274 LQEVMDVEMRCLRPVV----AMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDE 329

Query: 612 NIYDLSGEKFNLSSPKQLG----------------DILFTKL--KFPSGAKTKTGQWKTT 653
           N  + + +K  L + + +G                   F++L   F   A     Q    
Sbjct: 330 NTVNFNSQKQMLDALRAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKD 389

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             D         P ++ + ++R+ +K  +T+ D LP HIN  T ++H         +GR 
Sbjct: 390 TSDGTLARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAGSGRF 449

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPT-----KKLISADYSQIELRILAHIAKITPLY 768
           +   PNLQ IP +    ++ R  F+   T      K I AD+SQIELRI A +A    + 
Sbjct: 450 SCDSPNLQQIPRE----RRFRACFVPSKTVAGRPGKFIIADFSQIELRIAADLACDERMI 505

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLR 822
           + +    D+HR+ A+ I       +S   R+ AK +NF +IYG+S  R       A  + 
Sbjct: 506 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASSAYGVE 565

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +   EA D+  +YF  +PGI  +  + K    Q     T  GRR  ++     KS     
Sbjct: 566 MSLQEARDFHAKYFSSYPGITRWHRRQK--AEQPRETRTRAGRRALFEYFAFTKS----- 618

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
                +N PIQG++ADIT+ +++ +   L    L  ++++ +HDE++ EVPEE+     +
Sbjct: 619 -----LNYPIQGTSADITKESLVQLQHKLA--PLGGRLVMCVHDEIIAEVPEEKAEEGLR 671

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +++ +ME A    +   VP      ++++W ++
Sbjct: 672 VLIDTMEAAGNKYLRF-VPCVAEGAIADSWADK 703


>gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 704

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 208/453 (45%), Gaps = 62/453 (13%)

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL----------LSLEE 611
           +++++ V  R  +P++     ME+ G+QID    K++ A + +            L ++E
Sbjct: 274 LQEVMDVEMRCLRPVV----AMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDE 329

Query: 612 NIYDLSGEKFNLSSPKQLG----------------DILFTKL--KFPSGAKTKTGQWKTT 653
           N  + + +K  L + + +G                   F++L   F   A     Q    
Sbjct: 330 NTVNFNSQKQMLDALRAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKD 389

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             D         P ++ + ++R+ +K  +T+ D LP HIN  T ++H         +GR 
Sbjct: 390 TSDGTLARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAGSGRF 449

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPT-----KKLISADYSQIELRILAHIAKITPLY 768
           +   PNLQ IP +    ++ R  F+   T      K I AD+SQIELRI A +A    + 
Sbjct: 450 SCDSPNLQQIPRE----RRFRACFVPSKTVAGRPGKFIIADFSQIELRIAADLACDERMI 505

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLR 822
           + +    D+HR+ A+ I       +S   R+ AK +NF +IYG+S  R       A  + 
Sbjct: 506 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASSAYGVE 565

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +   EA D+  +YF  +PGI  +  + K    Q     T  GRR  ++     KS     
Sbjct: 566 MSLQEARDFHAKYFSSYPGITRWHRRQK--AEQPRETRTRAGRRALFEYFAFTKS----- 618

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
                +N PIQG++ADIT+ +++ +   L    L  ++++ +HDE++ EVPEE+     +
Sbjct: 619 -----LNYPIQGTSADITKESLVQLQHKLA--PLGGRLVMCVHDEIIAEVPEEKAEEGLR 671

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +++ +ME A    +   VP      ++++W ++
Sbjct: 672 VLIDTMEAAGNKYLRF-VPCVAEGAIADSWADK 703


>gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 138

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/137 (51%), Positives = 98/137 (71%)

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ 
Sbjct: 2   GRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLP 61

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+  YF R+PG+ EY+E+T
Sbjct: 62  LDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMERT 121

Query: 850 KNFVRQNGYVETIFGRR 866
           +   ++ GYVET+ GRR
Sbjct: 122 RAQAKEQGYVETLEGRR 138


>gi|229029362|ref|ZP_04185448.1| 5'-3' exonuclease [Bacillus cereus AH1271]
 gi|228731956|gb|EEL82852.1| 5'-3' exonuclease [Bacillus cereus AH1271]
          Length = 288

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVKPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N S +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVSSLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 704

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 208/453 (45%), Gaps = 62/453 (13%)

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL----------LSLEE 611
           +++++ V  R  +P++     ME+ G+QID    K++ A + +            L ++E
Sbjct: 274 LQEVMDVEMRCLRPVV----AMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDE 329

Query: 612 NIYDLSGEKFNLSSPKQLG----------------DILFTKL--KFPSGAKTKTGQWKTT 653
           N  + + +K  L + + +G                   F++L   F   A     Q    
Sbjct: 330 NTVNFNSQKQMLDALRAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKD 389

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             D         P ++ + ++R+ +K  +T+ D LP HIN  T ++H         +GR 
Sbjct: 390 TSDGTLARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAGSGRF 449

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPT-----KKLISADYSQIELRILAHIAKITPLY 768
           +   PNLQ IP +    ++ R  F+   T      K I AD+SQIELRI A +A    + 
Sbjct: 450 SCDSPNLQQIPRE----RRFRACFVPSKTVAGRPGKFIIADFSQIELRIAADLACDERMI 505

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLR 822
           + +    D+HR+ A+ I       +S   R+ AK +NF +IYG+S  R       A  + 
Sbjct: 506 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASSAYGVE 565

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +   EA D+  +YF  +PGI  +  + K    Q     T  GRR  ++     KS     
Sbjct: 566 MSLQEARDFHAKYFSSYPGITRWHRRQK--AEQPRETRTRAGRRALFEYFAFTKS----- 618

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
                +N PIQG++ADIT+ +++ +   L    L  ++++ +HDE++ EVPEE+     +
Sbjct: 619 -----LNYPIQGTSADITKESLVQLQHKLA--PLGGRLVMCVHDEIIAEVPEEKAEEGLR 671

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +++ +ME A    +   VP      ++++W ++
Sbjct: 672 VLIDTMEAAGNKYLRF-VPCVAEGAIADSWADK 703


>gi|308173992|ref|YP_003920697.1| 5'3'-exonuclease [Bacillus amyloliquefaciens DSM 7]
 gi|307606856|emb|CBI43227.1| 5'3'-exonuclease [Bacillus amyloliquefaciens DSM 7]
 gi|328912147|gb|AEB63743.1| 5'3'-exonuclease [Bacillus amyloliquefaciens LL3]
          Length = 295

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 149/267 (55%), Gaps = 13/267 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N L LVDG + ++R+F+AT +        +G+P N + GF   L   ++  +     +H 
Sbjct: 3   NKLLLVDGMALLFRSFFATAVHRNFMINENGIPTNGVNGFLKHLITAVETFQ----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + T+RN+++ DYKANR + P  L+PQ  L + A    GI  I I+G+EADD I
Sbjct: 59  VCCWDMGSKTYRNDLFQDYKANRSEPPLELIPQFDLAKEAAAELGILNIGIKGYEADDCI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDIEHVIK-KWGIPPE 177
            T + +   E   +TI++ DKDL+QL++       L   +   K+  E + + + G+PP+
Sbjct: 119 GTLSALFSGEA-EITIVTGDKDLLQLLNKQVQVALLQKGIGNYKVYTEEIFREETGVPPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            ++ ++AL GD+ DN PG+ GIG KTA  L++EY N++ +L + S +  K ++  I +  
Sbjct: 178 ALIDIKALMGDTSDNYPGVKGIGEKTAYKLIREYENIDRLLESLSLLP-KGQQTKIQQSL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLIL 264
           +   LSR+L  +  +VP+    E  + 
Sbjct: 237 KELELSRQLAEIHCEVPLVCTFEEALF 263


>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
 gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
          Length = 988

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 168/333 (50%), Gaps = 30/333 (9%)

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           I+++++ +Q+  + +T+   L   +  +  R+H   ++ +T TGR+++ +PNL N P   
Sbjct: 658 IESLIQLKQVETLLTTFIIPL-RELADKDGRIHCSLNM-NTETGRISARKPNLMNQPSHD 715

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
               KIR AF +    KLI ADY Q+ELRILAH+     + + F+   D H   A  ++ 
Sbjct: 716 KDVYKIRSAFQAGKGNKLIVADYGQLELRILAHMTNCKAMIEAFKMGGDFHSRTAMGMYP 775

Query: 788 VNIEKV-----------------SPQM-------RRHAKTINFSIIYGISPFRLATQLRI 823
              E++                 +P +       R+ AK +NFSI YG S    +     
Sbjct: 776 KLKEEIEKGELLLEWDKSQGEPPAPLLKDKYSSERKKAKMMNFSIAYGKSAHGFSKDWNC 835

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              EA + +  +F     + E+ E TK    ++GY +T+ GR  + + +   KS+   + 
Sbjct: 836 SMKEAQEALDAWFADRKEVKEWQENTKKIALEHGYTQTMMGRYRNLERLTHSKSARHLVQ 895

Query: 884 E--RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
              RA+IN PIQG AAD+   AM+ V +  + ++L  K+LLQIHDEL+ E PEE    A 
Sbjct: 896 HGLRASINTPIQGGAADLVIAAMVKVSQDPKLNELGYKLLLQIHDELILEGPEEHAQEAL 955

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++  ME      + L+  ++V+ KV NNW E
Sbjct: 956 ARVIEIMENPLDTPLLLK--MEVDAKVGNNWYE 986



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 57/100 (57%), Gaps = 9/100 (9%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVL 496
           D+  +NT   +++   K++ E+  + KI HN  +D+ + + +GI+++GF  D M ++ + 
Sbjct: 138 DNFAQNT---DLIQIFKEYLEDSRYKKIWHNYGFDRHIFYNHGINVQGFGGDTMHLARLA 194

Query: 497 DSGRS--SHDIASIAQKW---LSYTRKEILKSRKSSIPID 531
           D  R    + +A++ + +   + Y +++++   + SI I+
Sbjct: 195 DPSRGPKEYSLANVTKHYEEEIKYLKRQLINDLRKSIQIN 234


>gi|145346862|ref|XP_001417901.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578129|gb|ABO96194.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 671

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 209/435 (48%), Gaps = 42/435 (9%)

Query: 571 RLDKPMI-DVVSQMEIT-------GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           R D P+  DV +++ +        G+  D+    +     ++ +  LE       G   N
Sbjct: 231 RGDAPLARDVEAKVAVALGVLQHHGVGFDRTRADEQRRAANRRVEELEREAQKCIGVDIN 290

Query: 623 LSSPKQLGDILFTKLKFPSGAK-----TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           L+S +Q+ D+L+ KLK P+ +      +K+    T+ + L+ +    +   + +L  R  
Sbjct: 291 LASAQQVADVLYNKLKLPTPSAHAMKGSKSSHLSTSVEVLQSL-VKHHHFAQIVLNHRGA 349

Query: 678 SKIKS---TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
            K ++    Y  S     + R  R+HT ++   T TGRL+S  PN+Q +   T     +R
Sbjct: 350 LKERAMCDNYDKSAVIAADGRA-RIHTQWNNTKTATGRLSSSHPNIQQVGRGT-----MR 403

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS-LDIHRMVAAEIFGVNIEKV 793
             F++P  +  I+ADYSQIELR+LAH++    L  +   +  D+   +     G+ ++  
Sbjct: 404 NCFVAPTGRTFIAADYSQIELRVLAHLSGDDRLISLLRQAKGDVFVAIWNAGKGLPLDAP 463

Query: 794 SPQMRRH-AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           + +  R  AK   + I+YG     LA +L +P+SEA  YI  +   FP ++++I +    
Sbjct: 464 AEKSTRDIAKRTAYGIVYGQHATGLAEKLGVPKSEAQGYIAAFHRAFPKVNQWITRVLQR 523

Query: 853 VRQNGYVET-IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
             Q G V   + GR     +I+S   S R+  +R A+N  IQG+AAD+ + AM+    ++
Sbjct: 524 AEQTGAVTLPMSGRHRALPKIHSKVFSERSEAQRQAVNTIIQGTAADMMKTAMLRWTSAV 583

Query: 912 EDHKLATK------------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
              + A              ++ QIHDEL+FEV E+ +   ++ + + ME A    I L 
Sbjct: 584 GAGRFANDVAPGSVNKKRVTLVAQIHDELLFEVDEDYVPECARAVKNVMENA----IKLA 639

Query: 960 VPLKVNIKVSNNWQE 974
           VP  + + V  +W E
Sbjct: 640 VPTPIKLAVGTSWGE 654


>gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
 gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
          Length = 745

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 152/302 (50%), Gaps = 28/302 (9%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVH   ++ +T TGRL+S +PN+QN P       KIR+AF++ P   LI ADY Q+ELR+
Sbjct: 441 RVHCSLNI-NTETGRLSSRKPNMQNQPALEKDKYKIRQAFMASPGNNLIVADYGQLELRL 499

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS-----------------PQM--- 797
           LA +   T +   FE   D H   A  +F    + V+                 P +   
Sbjct: 500 LASMTDCTSMIDAFEAGGDFHSRTALGMFKYIQDAVANGDVLLEWDYSKGEPPKPMLKDQ 559

Query: 798 ----RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
               RR AKT+NFSI YG +   L+    +   EA + ++ ++   P + ++ + TK   
Sbjct: 560 YASERRKAKTLNFSIAYGKTAHGLSQDWGVSLKEAEEMLRAWYDSRPEVEKWQQNTKKAA 619

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIR-NINERAAINAPIQGSAADITRRAMISVHKSLE 912
           R  G   T+ GR  H        +  R    ERA+IN PIQG AAD+   AMI ++ SL 
Sbjct: 620 RNYGITRTLMGRYRHLPHAMEGNNRKRLGHAERASINTPIQGGAADVAMMAMIKINDSLL 679

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN-LRVPLKVNIKVS-N 970
             KL   +L+Q+HDE++ E PEE    A + +V  M++  +  ++  +VPL V+     N
Sbjct: 680 LKKLGWILLMQVHDEVILEGPEETAEEAFEEVVKCMQEPWVLGLDKTKVPLLVDGSFKHN 739

Query: 971 NW 972
           NW
Sbjct: 740 NW 741



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 102/235 (43%), Gaps = 38/235 (16%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHD 504
            K++L   K + E+   +K+ HN  +D+ VL   GI++ GF  D M M+ + D+ R  + 
Sbjct: 87  AKDLLQEFKPWLEDAKVMKVWHNYGFDRHVLFNEGINVLGFGGDTMHMARLSDTSRMKYS 146

Query: 505 IASIAQKWLSYTR---KEIL---KSRKSSI--------PID------KISDSQVQEHAIE 544
           + S+ +  L   +   KEI    + RK           P++      K  +S ++  A+ 
Sbjct: 147 LESLTEDLLKQRKVPMKEIFGVPRLRKDGTDGAIVDIPPVEVMQRDPKFRESWIKYSAM- 205

Query: 545 NSNVILQLWLLLRPKLI------VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++     L+  L+ +L+         ++  Y+   +P  ++++ +E  G+ + +D L  V
Sbjct: 206 DAKSTYNLYQHLKKELLKVGWIRQMNMMQYYQLHMRPFGELLTDLERRGMLVAKDYLADV 265

Query: 599 SAEISKNLLSLEENIYDLS-------GEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
             +  K+     E     +       G   NL+S  QL   LF   +    AKTK
Sbjct: 266 EVQARKDREGHVEAFRQWAFKQLGPDGLAMNLASSVQLTTFLFGGAE---NAKTK 317


>gi|328553080|gb|AEB23572.1| 5'3'-exonuclease [Bacillus amyloliquefaciens TA208]
          Length = 295

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 149/267 (55%), Gaps = 13/267 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N L LVDG + ++R+F+AT +        +G+P N + GF   L   ++  +     +H 
Sbjct: 3   NKLLLVDGMALLFRSFFATAVHRNFMINENGIPTNGVNGFLKHLITAVETFQ----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + T+RN+++ DYKANR + P  L+PQ  L + A    GI  I I+G+EADD I
Sbjct: 59  VCCWDMGSKTYRNDLFQDYKANRSEPPLELIPQFDLAKEAAAELGILNIGIKGYEADDCI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDIEHVIK-KWGIPPE 177
            T + +   E   +TI++ DKDL+QL++       L   +   K+  E + + + G+PP+
Sbjct: 119 GTLSALFSGEA-EITIVTGDKDLLQLLNKQVQVALLQKGIGNYKVYTEEIFREETGVPPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            ++ ++AL GD+ DN PG+ GIG KTA  L++EY N++ +L + S +  K ++  I +  
Sbjct: 178 ALIDIKALMGDTSDNYPGVKGIGEKTAYKLIREYENIDRLLESLSLLP-KGQQTKIQQSL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLIL 264
           +   LSR+L  +  +VP+    E  + 
Sbjct: 237 KELELSRQLAEIHCEVPLVCTFEEALF 263


>gi|226377780|ref|YP_002790829.1| DNA polymerase [Lactobacillus phage Lb338-1]
 gi|225921558|gb|ACO37071.1| DNA polymerase [Lactobacillus phage Lb338-1]
          Length = 1046

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 172/347 (49%), Gaps = 23/347 (6%)

Query: 650 WKTTAQDLEQIN-----CGDNP---IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           +KT    L+ +N      GD     + K + ++  ++KI S++ DSL  + +  T ++H 
Sbjct: 649 YKTNKVALDYVNSQAKEAGDKDTEDLTKMLAKFSIVNKISSSFTDSLREYTDD-TMKLHG 707

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKT------DLGQKIRRAFISP-PTKKLISADYSQIE 754
            +S   T T RL+S + NLQN+P +       +    I+R F+S  P  KLI+ DYS +E
Sbjct: 708 HFSAVGTETSRLSSSQINLQNLPAEKSNTHLFNYKYPIKRMFVSRFPNGKLINLDYSSLE 767

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
             ILA + K   +   F    DIH   AA ++ V  E V  + R+ AK+I F +IYG   
Sbjct: 768 FHILALVTKEDSMTGAFLEGKDIHTSNAALMYDVPYEDVIVEQRKAAKSIGFGLIYGKGD 827

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
             LA  L +   EA + I  +F   P +  +I+K   F   NGYV T+ G R +     S
Sbjct: 828 AALAEDLGLSLEEAQEKINTFFKSKPRVKAFIDKAHKFAENNGYVTTLNGFRRNLGGAFS 887

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                R+  +R ++N  IQGS A +T  A+I +++ L   K  + ++  +HD ++ + PE
Sbjct: 888 TDYGKRSKAQRQSVNTIIQGSGAILTNTAVIILNELLAKSKFKSVIIATVHDSILIDCPE 947

Query: 935 EEITTASQIIVHSMEKACLPKI-------NLRVPLKVNIKVSNNWQE 974
           EEI   S + ++ ME    P +        +R P++  + +   + +
Sbjct: 948 EEIDKVSTLALYVMEHLDYPWLFTNYKGKRIRYPIEAEVDIGKTYND 994


>gi|23099156|ref|NP_692622.1| 5'-3' exonuclease [Oceanobacillus iheyensis HTE831]
 gi|22777384|dbj|BAC13657.1| 5'-3' exonuclease [Oceanobacillus iheyensis HTE831]
          Length = 290

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/265 (35%), Positives = 146/265 (55%), Gaps = 17/265 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R F+AT           G+P N +  F     + L +S ++   +H 
Sbjct: 4   NKVLLVDGMALLFRGFFATSFRGNFMYTSKGVPTNGVYQFL----RYLMDSVQKFEPTHV 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E++  YKANR + P+ L+PQ  LV+   +AF +P I ++ FEADD I
Sbjct: 60  ICCWDMGSKTFRTELFAGYKANRDEPPKELIPQFDLVKEVVEAFNMPNIGLENFEADDCI 119

Query: 122 AT--YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            T  + Y  E E   VT+++ D+DL+QLV     +    K     E  D ++  +K G+ 
Sbjct: 120 GTLAHAYSLENE---VTVLTGDQDLLQLVKENIRIAIMRKGQGNYEVFDQDNFYEKKGLS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ L+ L GDS DN PG+ GIG KTA  LLQEY  ++++L N  ++  K  +  I  
Sbjct: 177 PKQIIDLKGLMGDSSDNYPGVKGIGEKTAIKLLQEYETIDDLLNNIEKLP-KGVQAKINA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLE 260
             +   LSR L  ++ DVPI+  L+
Sbjct: 236 NLDMLHLSRSLAEIKCDVPISCSLD 260


>gi|47566046|ref|ZP_00237084.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47556963|gb|EAL15293.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 288

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG+P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGIPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni]
 gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 132/234 (56%), Gaps = 7/234 (2%)

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVH 700
           G K KTG + T  + L  +    +P+I  IL++R+L+K+ STY + L    +  +  R++
Sbjct: 1   GKKGKTG-YSTDEKVLNAL-LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIY 58

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           + +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR+LAH
Sbjct: 59  SSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAH 118

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
            ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    L+  
Sbjct: 119 FSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQN 174

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           L+I    A  YI++YF  F  I +Y E  KN  +QNG++ T+ GR+ ++D  N+
Sbjct: 175 LKIEAHLAKSYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENA 228


>gi|228984760|ref|ZP_04144932.1| 5'-3' exonuclease [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228774958|gb|EEM23352.1| 5'-3' exonuclease [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 288

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG+P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGIPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 149/539 (27%), Positives = 265/539 (49%), Gaps = 69/539 (12%)

Query: 465 IGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSS--HDIASIAQKWLSYTRKEIL 521
           IGHN+K+D K +     I  +   D M+ S +L  G S+  H +++ A++++S    ++ 
Sbjct: 84  IGHNLKFDLKFLKTNLNILPKIVFDTMIASQILAKGDSNQRHSLSASAKRFVSL---DVD 140

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL--------------LH 567
           K+ + S    K   S+  E+A ++ + +  L+   + +L  + L              ++
Sbjct: 141 KTYQKSPWWAKDLSSEQIEYAAKDIDTLRHLFKEEKNQLNQDNLHKKASGETFKVFGVIN 200

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQD----LLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
               L+   +  + ++E++GI ID++    LLKQ  +E   + +  +        + F  
Sbjct: 201 PVAALEMAFLPALVEIELSGIPIDEEEAKKLLKQKESEFQSDYMKFK---IKTGADPF-- 255

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            SP+Q+ + L  KLK     KT+ G +  ++QD+   +  D   ++ +L+ R   KI   
Sbjct: 256 -SPQQVVNYLTNKLKIKL-PKTEKGSF--SSQDVFLKDYEDIEEVRLLLKLRADKKIIDK 311

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
             + L      R +RV+  +      TGR++SL PNLQNIP      + ++  F      
Sbjct: 312 IKEILQF---TRNERVYGEFKQIGAATGRMSSLRPNLQNIP------KNLKYLFKPKEGY 362

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           K I ADYSQIELRI A   K   +   F    D+H++ A+ I G + ++++ + R+ AK 
Sbjct: 363 KFIVADYSQIELRIAAQYTKDENMITAFNEGKDLHKLTASIITGKSYDEITKEERQLAKA 422

Query: 804 INFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           INF +IYG+SP  L    +      I   EA  + + YF  +    ++ +K K  + ++ 
Sbjct: 423 INFGLIYGMSPKSLVEYAKANYGVSISLQEAKKFHENYFKFYKSFKDWHDKVKEHLDKHR 482

Query: 858 YV--ETIFGRR-IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
            +  ET+ GR+ I Y   +             A+N PIQGS +D+ + A++   K   D 
Sbjct: 483 SIELETLLGRKLIAYKFTD-------------AVNYPIQGSGSDLLKMAVVFFFKERND- 528

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR-VPLKVNIKVSNNW 972
            L  K++  +HDE++ EV  ++I  A +++  SMEKA   K+ L+ VP+   + VS++W
Sbjct: 529 -LDAKVVNLVHDEILVEVAAKDIEKAKEVLSSSMEKAG--KLILKDVPVAFEMVVSDSW 584


>gi|229155248|ref|ZP_04283359.1| 5'-3' exonuclease [Bacillus cereus ATCC 4342]
 gi|228628173|gb|EEK84889.1| 5'-3' exonuclease [Bacillus cereus ATCC 4342]
          Length = 301

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG+P N I G+   L   +Q        +H   
Sbjct: 17  VLLVDGMALLFRAFYATSVYGQFMKRQDGIPTNGIHGYMKHLLTAMQAIE----PTHIVT 72

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 73  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 132

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 133 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 190 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 248

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 249 ENLNISLQLAQIHCEVPISCSLE 271


>gi|166157038|emb|CAO79495.1| putative 5'-3' exonuclease [uncultured candidate division WWE3
           bacterium EJ0ADIGA11YD11]
          Length = 306

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 152/302 (50%), Gaps = 8/302 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D  +F++RA++A P   R  DG P NAI GF +ML  +L   + + + +      D
Sbjct: 4   LLIIDTFNFLHRAYHALPKTFRGPDGQPTNAIYGFTSMLINVLNQIKPDYVVAAL----D 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR   +  YKA R  + E L  Q+P V     AF I  I ++G+EADD+I T   
Sbjct: 60  GKEPTFRVGEFTAYKAQRKPMEEDLQTQIPKVFEVLDAFNIKKIVVEGYEADDVIGTVA- 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQ 183
              K    + IIS D+DL QL      +    K+   E +  + V  K G   +K+   +
Sbjct: 119 TKLKGKVDILIISNDRDLWQLAGNGNIIMVPGKKGEFEWLGEKEVDAKLGFEADKIADYK 178

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD  DNIPG+ G+G  TA  LLQ+YG+LE I  N  +I+ +  ++ +LE  E A +S
Sbjct: 179 GLRGDPSDNIPGVFGVGEVTATKLLQKYGSLEEIYRNIEKIEPESLKKKLLESYEQALMS 238

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           ++L  +  DVP  I LE     D N  ++   L+   F  LI R+  + D    + E  V
Sbjct: 239 KRLAQIVLDVPFQINLEECKYSDLNKIKVKETLEKYNFKSLIKRLGFSVDEKKKDKESEV 298

Query: 304 LD 305
            D
Sbjct: 299 SD 300


>gi|308497564|ref|XP_003110969.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
 gi|308242849|gb|EFO86801.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
          Length = 927

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 200/417 (47%), Gaps = 44/417 (10%)

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK- 638
           V  M  TGI  D            + +  LEE I+ L+  KFN+ S  ++ +++F +L  
Sbjct: 531 VLNMFYTGISFDHSKCNSFITNTRQRIELLEEEIWRLAHGKFNIDSSNEVANVIFHRLGL 590

Query: 639 -FP--SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-PNHINK 694
            +P  S  K K     T    LEQ+    + I+  ILE+R    I+ T    L P  I  
Sbjct: 591 IYPETSSCKMKQRHLPTNKLILEQMK-NQHKIVGKILEYRH---IQHTLTQCLLPLSI-- 644

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-GQKIRRAFISPPTKKLISADYSQI 753
            + R+H    +  T TGR+ +  PNLQN+P +    G   R+ F +   + LISAD+ Q+
Sbjct: 645 YSTRIHCRMEMC-TATGRILTTVPNLQNVPKRVSTEGLSARQLFKASSGRILISADFKQL 703

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR+LAH++  + L ++     D+   ++ E    N        R   K + + +IYG+ 
Sbjct: 704 ELRVLAHLSNDSKLIELICADRDLFGELSVEW---NFS------RDVVKQLCYGLIYGMG 754

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIH----------------EYIEKTKNFVRQNG 857
           P  LA   ++  +EA   +  +F  FPG++                 YI +TK  V +  
Sbjct: 755 PKTLAELTKVKVAEAEKMLCSFFSMFPGLYLYLSNKGTYLYVTGVRSYINETKEHVSKEE 814

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
            V+TI GR+       + +   R   ER A+N  IQG+A++I + A++ +   ++ +   
Sbjct: 815 CVQTILGRKKFLKSGLTGEEKAR--VERVAVNYTIQGTASEIFKVAIVEIESKIKAY--G 870

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +++L IHDE + E PE      S+II   M+ + L  I LRVP+K+++K    W +
Sbjct: 871 ARIVLTIHDEFLVECPENRTPVISEIIRDCMQSS-LSDI-LRVPMKISLKTGTTWGD 925


>gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain
           Friedlin]
 gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major]
 gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major
           strain Friedlin]
          Length = 931

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 149/296 (50%), Gaps = 26/296 (8%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKT-----------DLGQK----IRRAFISPPTK 743
           +H  +    T TGRL+ +EPNLQN+P              + G++     RR F++    
Sbjct: 632 LHPNFLQEGTDTGRLSCVEPNLQNLPRNGITAAVAGNDAEEDGEEDLLGFRRCFVATDGC 691

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+S DY QIELR+LAH+     L +    S DIHR +A  +F    + VS + RR AK 
Sbjct: 692 VLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVF--KKKPVSTEERRLAKR 749

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           + F ++YG  P  LAT + +    A        + FPGI  Y  +     R NG+V T+ 
Sbjct: 750 VVFGLLYGAGPKTLATHMGVTVDRALHITSLLANAFPGIDAYQRRVIEEARTNGFVRTLS 809

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH--KLATKML 921
           GR  +  +I S   S R+  ER A N+ +QGSAAD+ + AM++V K +     +    +L
Sbjct: 810 GRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLL 869

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN---NWQE 974
            QIHDE+VF V +E +     ++  +M  A    + L VPL V  K  +   N QE
Sbjct: 870 SQIHDEMVFMVRKELLPMVVPLVSSAMSHA----MQLLVPLSVTAKFGDSLGNLQE 921


>gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b]
          Length = 190

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/189 (42%), Positives = 126/189 (66%), Gaps = 5/189 (2%)

Query: 632 ILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           +LF KL+ P+    K KTG + T  ++L ++  G +P+I+ I + R+L+K+K+TY D+LP
Sbjct: 1   MLFIKLQLPTTGIKKGKTG-YSTGQKELNKLR-GLHPVIELIEQTRELAKLKNTYVDALP 58

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
             ++K   R+HT ++     TGRL+S  PNLQNIPI++ LG+KIR AFI+     L+SAD
Sbjct: 59  KLVDK-NYRLHTTFNQDVVSTGRLSSTHPNLQNIPIRSTLGKKIRNAFIADEDNILVSAD 117

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQ ELR+ A +A    L   F N +DIH   A++++ + +++V+   RR+AK INF ++
Sbjct: 118 YSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVTSNQRRNAKVINFGVL 177

Query: 810 YGISPFRLA 818
           YG+SP  L+
Sbjct: 178 YGMSPHGLS 186


>gi|52143770|ref|YP_083058.1| 5'-3' exonuclease [Bacillus cereus E33L]
 gi|51977239|gb|AAU18789.1| 5'-3' exonuclease [Bacillus cereus E33L]
          Length = 288

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|30261677|ref|NP_844054.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Ames]
 gi|47526880|ref|YP_018229.1| 5'-3' exonuclease family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184506|ref|YP_027758.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Sterne]
 gi|49480970|ref|YP_035796.1| 5'-3' exonuclease [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65318945|ref|ZP_00391904.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI)
           [Bacillus anthracis str. A2012]
 gi|165869566|ref|ZP_02214225.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0488]
 gi|167633236|ref|ZP_02391561.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0442]
 gi|167639181|ref|ZP_02397454.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0193]
 gi|170686123|ref|ZP_02877345.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0465]
 gi|170706428|ref|ZP_02896888.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0389]
 gi|177650319|ref|ZP_02933286.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0174]
 gi|196046646|ref|ZP_03113870.1| 5'-3' exonuclease family protein [Bacillus cereus 03BB108]
 gi|225863545|ref|YP_002748923.1| 5'-3' exonuclease family protein [Bacillus cereus 03BB102]
 gi|227815571|ref|YP_002815580.1| 5'-3' exonuclease family protein [Bacillus anthracis str. CDC 684]
 gi|229601865|ref|YP_002866083.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0248]
 gi|254683168|ref|ZP_05147029.1| 5'-3' exonuclease family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723756|ref|ZP_05185542.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A1055]
 gi|254734516|ref|ZP_05192228.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740929|ref|ZP_05198617.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Kruger B]
 gi|254755167|ref|ZP_05207201.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Vollum]
 gi|254759704|ref|ZP_05211728.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Australia
           94]
 gi|301053216|ref|YP_003791427.1| 5'-3' exonuclease [Bacillus anthracis CI]
 gi|30255905|gb|AAP25540.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Ames]
 gi|47502028|gb|AAT30704.1| 5'-3' exonuclease family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178433|gb|AAT53809.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Sterne]
 gi|49332526|gb|AAT63172.1| 5'-3' exonuclease [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|164715006|gb|EDR20524.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0488]
 gi|167512971|gb|EDR88344.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0193]
 gi|167531274|gb|EDR93952.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0442]
 gi|170128526|gb|EDS97393.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0389]
 gi|170669820|gb|EDT20561.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0465]
 gi|172083463|gb|EDT68523.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0174]
 gi|196022579|gb|EDX61262.1| 5'-3' exonuclease family protein [Bacillus cereus 03BB108]
 gi|225786956|gb|ACO27173.1| 5'-3' exonuclease family protein [Bacillus cereus 03BB102]
 gi|227004358|gb|ACP14101.1| 5'-3' exonuclease family protein [Bacillus anthracis str. CDC 684]
 gi|229266273|gb|ACQ47910.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0248]
 gi|300375385|gb|ADK04289.1| 5'-3' exonuclease [Bacillus cereus biovar anthracis str. CI]
          Length = 288

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|229195883|ref|ZP_04322642.1| 5'-3' exonuclease [Bacillus cereus m1293]
 gi|228587656|gb|EEK45715.1| 5'-3' exonuclease [Bacillus cereus m1293]
          Length = 288

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|229172320|ref|ZP_04299881.1| 5'-3' exonuclease [Bacillus cereus MM3]
 gi|228611155|gb|EEK68416.1| 5'-3' exonuclease [Bacillus cereus MM3]
          Length = 299

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 15  VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 71  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 130

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 131 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 187

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 188 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVATLT-KAQRTKIESDL 246

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 247 ENLNISLQLAQIHCEVPISCSLE 269


>gi|323464463|gb|ADX76616.1| 5'-3' exonuclease, putative [Staphylococcus pseudintermedius ED99]
          Length = 293

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 146/262 (55%), Gaps = 19/262 (7%)

Query: 7   LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG + ++R FYAT +     R  +G P N   GF   ++  +++       +H A+
Sbjct: 5   LLLIDGMALLFRHFYATSVHKNFMRNTNGTPTNGTQGFVRHVYSAIRDVE----PTHVAI 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFRN+++  YK NRP  PE L+PQ   V+  +++ G   I ++ +EADD+I T
Sbjct: 61  CWDMGKATFRNDMFDGYKQNRPAPPEELIPQFDHVQHISESLGFLNIGVENYEADDVIGT 120

Query: 124 YTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178
            T+  A+     V II+ D+DL+Q V     ++       +  K D      ++ + P +
Sbjct: 121 LTHAYAQSPDHEVYIITGDRDLLQCVRDNVYVWLIKKGFTEYSKYDRARFELEYQLQPPQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI---KQKKRRENILE 235
           ++ ++A  GD+ D  PG+ GIG KTA  L+Q+YG++E ++ N S++   +QKK  +N+  
Sbjct: 181 LIEVKAFMGDTADGYPGVKGIGEKTAIKLVQQYGSVEEVIANVSQLTPGQQKKIAQNM-- 238

Query: 236 YAETARLSRKLVMLRTDVPITI 257
             E  RLS++L  +  +VP++I
Sbjct: 239 --ENLRLSKQLATIELNVPLSI 258


>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
          Length = 2579

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 210/455 (46%), Gaps = 66/455 (14%)

Query: 562  VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL----------LSLEE 611
            +++++ V  R  +P++     ME+ G+QID    K++ A + +            L ++E
Sbjct: 2149 LQEVMDVEMRCLRPVV----AMELNGMQIDHARWKELEAHLRREEEKARQRLAAELHVDE 2204

Query: 612  NIYDLSGEKFNLSSPKQLG----------------DILFTKL--KFPSGAKTKTGQWKTT 653
            N  + + +K  L + + +G                   F++L   F   A     Q    
Sbjct: 2205 NTVNFNSQKQMLDALRAIGIPAPPPDRPESRTRGSRFSFSELPLGFDKNAAEVEDQLLKD 2264

Query: 654  AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              D         P ++ + ++R+ +K  +T+ D LP HIN  T ++H         +GR 
Sbjct: 2265 TSDGTLARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLHQCGAGSGRF 2324

Query: 714  ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-------KLISADYSQIELRILAHIAKITP 766
            +   PNLQ IP +    ++ R  F+  P+K       K I AD+SQIELRI A +A    
Sbjct: 2325 SCDSPNLQQIPRE----RRFRACFV--PSKTVAGRPGKFIIADFSQIELRIAADLACDER 2378

Query: 767  LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQ 820
            + + +    D+HR+ A+ I       +S   R+ AK +NF +IYG+S  R       A  
Sbjct: 2379 MIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASSAYG 2438

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            + +   EA D+  +YF  +PGI  +  + K    Q     T  GRR  ++     KS   
Sbjct: 2439 VEMSLQEARDFHAKYFSSYPGITRWHRRQK--AEQPRETRTRAGRRALFEYFAFTKS--- 2493

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
                   +N PIQG++ADIT+ +++ +   L    L  ++++ +HDE++ EVPEE+    
Sbjct: 2494 -------LNYPIQGTSADITKESLVQLQHKLA--PLGGRLVMCVHDEIIAEVPEEKAEEG 2544

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ++++ +ME A    +   VP      ++++W ++
Sbjct: 2545 LRVLIDTMEAAGNKYLRF-VPCVAEGAIADSWADK 2578


>gi|229160633|ref|ZP_04288627.1| 5'-3' exonuclease [Bacillus cereus R309803]
 gi|228622832|gb|EEK79664.1| 5'-3' exonuclease [Bacillus cereus R309803]
          Length = 299

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 15  VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 71  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 130

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 131 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 187

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 188 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVASLT-KAQRTKIESDL 246

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 247 ENLNISLQLAQIHCEVPISCSLE 269


>gi|324325697|gb|ADY20957.1| 5'-3' exonuclease [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 288

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVAALT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|296084279|emb|CBI24667.3| unnamed protein product [Vitis vinifera]
          Length = 441

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 160/309 (51%), Gaps = 42/309 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKL-------LQNSRKESIAS 59
           + L+DG+S IYRA+Y   LL++ H G   +A     N  W L       L     + I S
Sbjct: 113 VMLIDGTSIIYRAYYK--LLAKLHHGYLSHADG---NGDWVLTIFAALSLIVDVLDFIPS 167

Query: 60  HFAVIFDYPAV------------------TFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
           H AV+FD+  +                   FR+ +YP YK+NRP  P+ ++  L  ++ +
Sbjct: 168 HVAVVFDHNGIPFGHTSISSKESIMAKGLNFRHTLYPSYKSNRPPTPDTIVQGLQYLKAS 227

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE- 160
            +A  I  IE+ G EADD+I T +  +   G+ V ++S DKD  Q++SP+  L       
Sbjct: 228 IKAMSIKVIEVPGVEADDVIGTLSVRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAPRG 287

Query: 161 ---EKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
                  +E   K++G + P + V + +L GD  DNIPG+ GIG   A  L+ ++G LEN
Sbjct: 288 FEMTSFGMEDFAKRYGNLEPSQFVDVISLVGDKSDNIPGVEGIGNVHAVQLITKFGTLEN 347

Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI-TIPL--EHLIL---EDCNGP 270
           +L    ++++++ R+ ++  A+ A LS+ L +LR D+P   +P   E LI    ED NG 
Sbjct: 348 LLQCVDQVQEERIRKALISGADQAVLSKNLALLRCDLPFYMVPFTTEDLIFTKPED-NGE 406

Query: 271 RLISFLKAL 279
           +  S L A+
Sbjct: 407 KFTSLLNAI 415


>gi|118477127|ref|YP_894278.1| 5'-3' exonuclease [Bacillus thuringiensis str. Al Hakam]
 gi|228926711|ref|ZP_04089779.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228932971|ref|ZP_04095834.1| 5'-3' exonuclease [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229183877|ref|ZP_04311093.1| 5'-3' exonuclease [Bacillus cereus BGSC 6E1]
 gi|118416352|gb|ABK84771.1| 5'-3' exonuclease [Bacillus thuringiensis str. Al Hakam]
 gi|228599529|gb|EEK57133.1| 5'-3' exonuclease [Bacillus cereus BGSC 6E1]
 gi|228826572|gb|EEM72343.1| 5'-3' exonuclease [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228832824|gb|EEM78393.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 301

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 17  VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 72

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 73  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 132

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 133 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPW 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 190 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 248

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 249 ENLNISLQLAQIHCEVPISCSLE 271


>gi|325521684|gb|EGD00447.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 228

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 82/215 (38%), Positives = 127/215 (59%), Gaps = 1/215 (0%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RKE  A + A +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKEVSAEYSACVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + ++G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMVEGVEADDVIGTLAREAERCGMNVIVSTGDKDLAQLVTDRVTLVNTMTNETLDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           VI K+G+PPE+++   AL GD++DN+PG+   G KTA   L +Y +L+ ++ +A+ IK  
Sbjct: 121 VIAKFGVPPERIIDYLALIGDTVDNVPGVEKCGPKTAVKWLTQYDSLDGVIEHAAEIK-G 179

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
              +N+    +   L RKLV + T   +   LE +
Sbjct: 180 VVGDNLRRALDFLPLGRKLVTVETACDLAPHLESI 214


>gi|229058317|ref|ZP_04196702.1| 5'-3' exonuclease [Bacillus cereus AH603]
 gi|228719991|gb|EEL71580.1| 5'-3' exonuclease [Bacillus cereus AH603]
          Length = 288

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|52080710|ref|YP_079501.1| putative 5'-3' exonuclease [Bacillus licheniformis ATCC 14580]
 gi|52786084|ref|YP_091913.1| YpcP [Bacillus licheniformis ATCC 14580]
 gi|319645330|ref|ZP_07999563.1| YpcP protein [Bacillus sp. BT1B_CT2]
 gi|52003921|gb|AAU23863.1| putative 5'-3' exonuclease [Bacillus licheniformis ATCC 14580]
 gi|52348586|gb|AAU41220.1| YpcP [Bacillus licheniformis ATCC 14580]
 gi|317393139|gb|EFV73933.1| YpcP protein [Bacillus sp. BT1B_CT2]
          Length = 295

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 149/263 (56%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATP-----LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG + ++R+F+AT      +L+ K  G+P N + GF     K L  +      SH 
Sbjct: 5   LLLVDGMALLFRSFFATAVHRNFMLNDK--GVPTNGVHGF----LKHLLTAASAFEPSHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + T+RN+++ DYKANR + P  L+PQ  + + A +  GI  I + G+EADD I
Sbjct: 59  ICCWDMGSKTYRNDLFKDYKANRSEPPLELIPQFDMAKEAAEELGILNIGLAGYEADDCI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVI-KKWGIPPE 177
            T T +  +E   +TI++ DKDL+QL++       L   +   K+  E    ++ GI P+
Sbjct: 119 GTLTAMFSEEA-DITIVTGDKDLLQLLTVNVKVALLQKGIGNYKVYTEESFSEETGIEPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            ++ ++AL GD+ DN PG+ GIG KTA  L++EY  ++ +L N  ++  K ++  I E  
Sbjct: 178 ALIDIKALMGDTSDNYPGVKGIGEKTAYKLIKEYSTVDRLLENIGQL-TKGQQTKITECL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E  ++SR L  ++ DVP++  L+
Sbjct: 237 EDLKMSRILAEIKCDVPLSCSLD 259


>gi|229189761|ref|ZP_04316775.1| 5'-3' exonuclease [Bacillus cereus ATCC 10876]
 gi|228593810|gb|EEK51615.1| 5'-3' exonuclease [Bacillus cereus ATCC 10876]
          Length = 288

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV  +  +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKSVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVGSLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 824

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 148/307 (48%), Gaps = 32/307 (10%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVH   ++ +T TGRL++  P+LQN P        IR+AF + P   L+ ADY Q+ELR+
Sbjct: 518 RVHGALNI-NTETGRLSARRPSLQNQPALEKDRYGIRKAFTAGPGNILVVADYGQLELRL 576

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI---------------------EKVSPQ 796
           LAH+A    + + FE   D H   A  ++  NI                     EK  P 
Sbjct: 577 LAHMADCKSMQEAFEAGGDFHSRTALGMYS-NIKEAIDKGEVVLEYGEQEETVDEKDRPA 635

Query: 797 M--------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
           +        RR AK +NFSI YG +   LA        EAA+ ++ ++   P + E+ E 
Sbjct: 636 LVKDVFASERRKAKVLNFSIAYGKTAHGLAKDWGTSLEEAANTVELWYADRPEVREWQEV 695

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
            K    +   V T+ GR  +  + +S   + ++   RA+IN PIQG AADI   AM+ + 
Sbjct: 696 QKKMAVEKNLVRTLLGRVRNLPDASSKNEAFKSHALRASINTPIQGGAADIAMLAMLQIQ 755

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN-LRVPLKVNIK 967
           +     +L  K+L+QIHDE++ E PEE    A  +  + ME      +N L V L V+  
Sbjct: 756 RCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTKYHMENPFPGHVNLLNVALAVDGD 815

Query: 968 VSNNWQE 974
            +  W E
Sbjct: 816 YAKTWYE 822


>gi|255081196|ref|XP_002507820.1| predicted protein [Micromonas sp. RCC299]
 gi|226523096|gb|ACO69078.1| predicted protein [Micromonas sp. RCC299]
          Length = 223

 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 123/236 (52%), Gaps = 24/236 (10%)

Query: 6   HLFLVDGSSFIYRAFY-----ATPLLSRKHDGLPV-----NAIAGFCNMLWKLLQNSRKE 55
           H+ LVDG S I+R+FY     A PLL+ K + + V     +AI G              E
Sbjct: 2   HVVLVDGMSMIFRSFYGWKNRAEPLLNSKGEDVSVQYSVAHAILGVL------------E 49

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H AV FD    TFR+E++ DYKANRP  P  L   +P V    +  G+P +   G 
Sbjct: 50  LDPTHLAVCFDAKGKTFRHEMFTDYKANRPPTPPELKETIPRVIEMVRRMGVPLLMTSGV 109

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADDII T    + + G  V+++S DKD  QL+ P       V   + D        G+ 
Sbjct: 110 EADDIIGTVARRSVERGLHVSVVSPDKDFFQLLGPRLSARGLVPYTERDFRAEFG--GLD 167

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           P + V L A+ GDS DNIPG+ GIG KTA  LL EYGN+E  + NA  I+ K+ RE
Sbjct: 168 PAQFVDLLAMVGDSSDNIPGVEGIGPKTAPKLLGEYGNIEGCVANAMEIRNKRVRE 223


>gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1264

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 148/285 (51%), Gaps = 19/285 (6%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIP----------IKTDLGQKIRRAFISPPTKKLISA 748
            +H  +    T TGRL+ +EPNLQN+P           + DL    RR F++     L+S 
Sbjct: 971  LHPNFLQEGTDTGRLSCVEPNLQNLPRNGITSTEEEGEEDL-LGFRRCFVAAAGCVLLSI 1029

Query: 749  DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            DY QIELR+LAH+     L +   +S DIH+ +A  +F    + VS + R  AK + F +
Sbjct: 1030 DYQQIELRVLAHLCGDPALVKALTSSADIHQTIAEVVF--KKKPVSTEERSLAKRVVFGV 1087

Query: 809  IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            +YG  P  LAT + +    A        + FPGI+ Y  +     R NG+V T+ GR  +
Sbjct: 1088 LYGAGPKTLATHMGVTVDRALHITSLLTNAFPGINTYHRRVIAETRANGFVRTLSGRLRY 1147

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH--KLATKMLLQIHD 926
              +I S   S R+  ER A N+ +QGSAAD+ + AM++V K +     +    +L QIHD
Sbjct: 1148 LPDICSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHD 1207

Query: 927  ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
            E+VF V +E + T   ++  +M  A    + L VPL V +K   +
Sbjct: 1208 EMVFMVRKEHLRTVVPLLSSAMSHA----MQLLVPLSVTVKFGTS 1248


>gi|196039078|ref|ZP_03106385.1| 5'-3' exonuclease family protein [Bacillus cereus NVH0597-99]
 gi|300117391|ref|ZP_07055181.1| 5'-3' exonuclease [Bacillus cereus SJ1]
 gi|196030223|gb|EDX68823.1| 5'-3' exonuclease family protein [Bacillus cereus NVH0597-99]
 gi|298725226|gb|EFI65878.1| 5'-3' exonuclease [Bacillus cereus SJ1]
          Length = 288

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  +E
Sbjct: 236 ENLNISLQLAQIHCEVPISCSIE 258


>gi|229096174|ref|ZP_04227147.1| 5'-3' exonuclease [Bacillus cereus Rock3-29]
 gi|229115129|ref|ZP_04244539.1| 5'-3' exonuclease [Bacillus cereus Rock1-3]
 gi|228668269|gb|EEL23701.1| 5'-3' exonuclease [Bacillus cereus Rock1-3]
 gi|228687134|gb|EEL41039.1| 5'-3' exonuclease [Bacillus cereus Rock3-29]
          Length = 288

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V +++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYVLTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|228952059|ref|ZP_04114154.1| 5'-3' exonuclease [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229069232|ref|ZP_04202523.1| 5'-3' exonuclease [Bacillus cereus F65185]
 gi|228713984|gb|EEL65868.1| 5'-3' exonuclease [Bacillus cereus F65185]
 gi|228807591|gb|EEM54115.1| 5'-3' exonuclease [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 288

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV  +  +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKSVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|196033518|ref|ZP_03100930.1| 5'-3' exonuclease family protein [Bacillus cereus W]
 gi|218902792|ref|YP_002450626.1| 5'-3' exonuclease family protein [Bacillus cereus AH820]
 gi|195993952|gb|EDX57908.1| 5'-3' exonuclease family protein [Bacillus cereus W]
 gi|218537582|gb|ACK89980.1| 5'-3' exonuclease family protein [Bacillus cereus AH820]
          Length = 288

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  +E
Sbjct: 236 ENLNISLQLAQIHCEVPISCSIE 258


>gi|158285510|ref|XP_564726.3| AGAP007533-PA [Anopheles gambiae str. PEST]
 gi|157020027|gb|EAL41770.3| AGAP007533-PA [Anopheles gambiae str. PEST]
          Length = 1997

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 203/436 (46%), Gaps = 52/436 (11%)

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDIL 633
            P+   ++  E+ G  +D++ L  + A++      + E    L+G ++ +  S + +    
Sbjct: 1568 PVQLALASAEVIGFPVDRERLAALIAQLKACRDRIAEEARKLNGNQRLDFGSSRAVAK-- 1625

Query: 634  FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
               L+   G   K  Q +T  Q LE++   ++P+   ++ +R++    +   + L   + 
Sbjct: 1626 --ALRLAGGNDRK--QCRTVRQVLERL---ESPLAALVIAYRKIESNLTRTIEPLYRIVR 1678

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNI----PIKTDLGQKIRRAFISPP-------- 741
              + RVH   S   T TGR+   EPNLQ +     +   L +       +PP        
Sbjct: 1679 PGSNRVHG-RSFCFTSTGRITMHEPNLQTVVKDFTVPARLTEGGGGGGDAPPPLFSCRST 1737

Query: 742  --------TKKLISADYSQIELRILAHIAKITPLYQVF-----------ENSLDIHRMVA 782
                       L+SAD+ Q+EL IL H+++   L               E   D+ R +A
Sbjct: 1738 FACSDPDGGTVLLSADFCQLELSILTHLSQDPQLMAALGGGGNEAPGRTEARSDVFRALA 1797

Query: 783  AEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            A       E  VS ++R   K I + +IYG+    +A +L++    A   ++++   +P 
Sbjct: 1798 ARWNHYERESDVSDELRNRTKAIVYGVIYGMGVRAMAAELQLDEDAARTLMEQFHATYPE 1857

Query: 842  IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            I  YIE+     RQ GY+ET+ GRR H   I S  +  R+  ER A+   IQGSAADI +
Sbjct: 1858 IRRYIERVVRLTRQLGYIETLTGRRRHLPAITSENARERSEAERQAVCTTIQGSAADILK 1917

Query: 902  RAMISVHKSLEDHKLATKM-----LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
             A++ + ++L  ++   ++     +L +HDEL++EVP  ++   ++I+  SME       
Sbjct: 1918 NAIVRMRRNLRKYRNVLELERIRFVLHMHDELIYEVPRSQLHKIAKILKSSMENCA---- 1973

Query: 957  NLRVPLKVNIKVSNNW 972
             L VPL+V +K   +W
Sbjct: 1974 KLSVPLRVKLKAGPSW 1989


>gi|206974993|ref|ZP_03235908.1| 5'-3' exonuclease family protein [Bacillus cereus H3081.97]
 gi|217959163|ref|YP_002337711.1| 5'-3' exonuclease family protein [Bacillus cereus AH187]
 gi|222095307|ref|YP_002529367.1| 5'-3' exonuclease [Bacillus cereus Q1]
 gi|229138376|ref|ZP_04266970.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST26]
 gi|206747012|gb|EDZ58404.1| 5'-3' exonuclease family protein [Bacillus cereus H3081.97]
 gi|217066386|gb|ACJ80636.1| 5'-3' exonuclease family protein [Bacillus cereus AH187]
 gi|221239365|gb|ACM12075.1| 5'-3' exonuclease [Bacillus cereus Q1]
 gi|228645141|gb|EEL01379.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST26]
          Length = 288

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTVKLSVPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVAALT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|229016937|ref|ZP_04173862.1| 5'-3' exonuclease [Bacillus cereus AH1273]
 gi|229023144|ref|ZP_04179656.1| 5'-3' exonuclease [Bacillus cereus AH1272]
 gi|228738179|gb|EEL88663.1| 5'-3' exonuclease [Bacillus cereus AH1272]
 gi|228744356|gb|EEL94433.1| 5'-3' exonuclease [Bacillus cereus AH1273]
          Length = 288

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|167915857|ref|ZP_02502948.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 248

 Score =  150 bits (380), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 124/204 (60%), Gaps = 1/204 (0%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIK-G 179

Query: 228 KRRENILEYAETARLSRKLVMLRT 251
              +N+    +   L+RKLV + T
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVET 203


>gi|167743556|ref|ZP_02416330.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 257

 Score =  150 bits (380), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 124/204 (60%), Gaps = 1/204 (0%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIK-G 179

Query: 228 KRRENILEYAETARLSRKLVMLRT 251
              +N+    +   L+RKLV + T
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVET 203


>gi|167724605|ref|ZP_02407841.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 258

 Score =  150 bits (380), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 124/204 (60%), Gaps = 1/204 (0%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIK-G 179

Query: 228 KRRENILEYAETARLSRKLVMLRT 251
              +N+    +   L+RKLV + T
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVET 203


>gi|228907315|ref|ZP_04071174.1| 5'-3' exonuclease [Bacillus thuringiensis IBL 200]
 gi|228852369|gb|EEM97164.1| 5'-3' exonuclease [Bacillus thuringiensis IBL 200]
          Length = 288

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ GI P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGIEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|167820744|ref|ZP_02452424.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 264

 Score =  150 bits (380), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 124/204 (60%), Gaps = 1/204 (0%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIK-G 179

Query: 228 KRRENILEYAETARLSRKLVMLRT 251
              +N+    +   L+RKLV + T
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVET 203


>gi|319892434|ref|YP_004149309.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162130|gb|ADV05673.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 293

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 145/259 (55%), Gaps = 13/259 (5%)

Query: 7   LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG + ++R FYAT +     R  +G P N   GF   ++  +++       +H A+
Sbjct: 5   LLLIDGMALLFRHFYATSVHKNFMRNTNGTPTNGTQGFVRHVYSAIRDVE----PTHVAI 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFRN+++  YK NRP  PE L+PQ   V+  +++ G   I ++ +EADD+I T
Sbjct: 61  CWDMGKATFRNDMFDGYKQNRPAPPEELIPQFDHVQHISESLGFLNIGVENYEADDVIGT 120

Query: 124 YTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178
            T+  A+     V II+ D+DL+Q V     ++       +  K D      ++ + P +
Sbjct: 121 LTHAYAQSPDHEVYIITGDRDLLQCVRDNVYVWLIKKGFTEYSKYDRARFELEYQLQPPQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++A  GD+ D  PG+ GIG KTA  L+Q+YG++E ++ N S++   ++++ I +  E
Sbjct: 181 LIEVKAFMGDTADGYPGVKGIGEKTAIKLVQQYGSVEEVIANVSQLTPGQQKK-IAQDME 239

Query: 239 TARLSRKLVMLRTDVPITI 257
             RLS++L  +  +VP++I
Sbjct: 240 NLRLSKQLATIELNVPLSI 258


>gi|262341095|ref|YP_003283950.1| DNA polymerase I [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272432|gb|ACY40340.1| DNA polymerase I [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 297

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 165/303 (54%), Gaps = 18/303 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M     LFL+D    IY+++YA    PLL+ K  GL  + I  F   L K L + +    
Sbjct: 1   MNNNKKLFLIDAYPLIYQSYYAYINKPLLTSK--GLNTSPIINFTYFLIKTLNDEK---- 54

Query: 58  ASHFAVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-GF 115
            S+ A IFD    ++FR + Y  YKA+R KIPE +   +P +R   + F I  +  + G+
Sbjct: 55  PSYMATIFDDNQEISFRKKEYYKYKAHRKKIPEAICIAIPYIRKILKTFQISCLHAKNGY 114

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKK 171
           EADDII T    AE +G+ + II+ DKD  QLV+    +Y        ++   IE + +K
Sbjct: 115 EADDIIGTIAKKAENKGYIIYIITLDKDFFQLVTENIKVYIPPFKGNPKKIFGIEEIKEK 174

Query: 172 WGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           +G+  P++++ L ++ GD  DNIPG+PGIG K A   +Q+YG++E  L+N++   + K +
Sbjct: 175 FGVNHPKQVIDLWSMMGDPSDNIPGLPGIGEKNAKKFIQKYGSIEK-LLNSTHDLKGKIQ 233

Query: 231 ENILEYAETARLSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +N+ +      LS+KL+ + TD+P+ +   E   ++  N   +    + LEF +L+ +  
Sbjct: 234 KNLEKNKNLGLLSKKLITIVTDIPLFSFHEEKFHVKKPNWLSIKKIFEELEFIRLLKKAH 293

Query: 290 TTY 292
             Y
Sbjct: 294 EYY 296


>gi|229084688|ref|ZP_04216955.1| 5'-3' exonuclease [Bacillus cereus Rock3-44]
 gi|228698644|gb|EEL51362.1| 5'-3' exonuclease [Bacillus cereus Rock3-44]
          Length = 288

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L    Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAAQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTSKLSIPVIGLKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y +E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKEYASEAE---VYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVAAVLENMAALT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAKIHCEVPISCSLE 258


>gi|229102285|ref|ZP_04232994.1| 5'-3' exonuclease [Bacillus cereus Rock3-28]
 gi|228681186|gb|EEL35354.1| 5'-3' exonuclease [Bacillus cereus Rock3-28]
          Length = 300

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 16  VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 71

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 72  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCIGT 131

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V +++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 132 LAKQYCNEAE---VYVLTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 188

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 189 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASLT-KAQRTKIESDL 247

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 248 ENLNISLQLAQIHCEVPISCSLE 270


>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
          Length = 1067

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 157/327 (48%), Gaps = 47/327 (14%)

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            ++++ +  RVH   ++ +T TGRL++  PNLQN P       KIR+AF++ P   L+ AD
Sbjct: 740  SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVAD 798

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796
            Y Q+ELRILAH+     + + F+   D H   A  ++         G  I +  P+    
Sbjct: 799  YGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGED 858

Query: 797  -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                          RR AK +NFSI YG +   L+   ++   EA + +  +++    + 
Sbjct: 859  KPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVR 918

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            ++ E  K    ++GYV T+ GR   +    S   + RN  +RAAIN P+QGSAAD+   A
Sbjct: 919  KWQEMRKKEAIEDGYVLTLLGRSRRFPA--SKSRAQRNHIQRAAINTPVQGSAADVAMCA 976

Query: 904  MISVHKSLEDHKLATKMLL------------------QIHDELVFEVPEEEITTASQIIV 945
            M+ +  + +  KL  ++LL                  QIHDE++ E P E    A  I+V
Sbjct: 977  MLEISINQQLKKLGWRLLLQWSLLDWKLSNKGNLYWKQIHDEVILEGPIESAEIAKDIVV 1036

Query: 946  HSMEKACLPKINLRVPLKVNIKVSNNW 972
              M K    +  L V L V+ K + NW
Sbjct: 1037 DCMSKPFNGRNILSVDLSVDAKCAQNW 1063



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
           D  G+N   +E+L+  K +FE+    K+ HN  +D  ++  +GI + GF  D M M+ + 
Sbjct: 334 DVLGENG--REVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLW 391

Query: 497 DSGR 500
           DS R
Sbjct: 392 DSAR 395


>gi|319787968|ref|YP_004147443.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466480|gb|ADV28212.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 326

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 129/255 (50%), Gaps = 9/255 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   R   G P NA+ GF   L +LL+  R   IA  F    D
Sbjct: 21  LYLVDASLYVFRAWHSMPDEFRDAQGWPTNAVHGFARFLLELLERERPGHIAIAFDEALD 80

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ IYP YK NR   P+ L  Q    +    A G+  +    +EADD+I T  Y
Sbjct: 81  ---SCFRHRIYPAYKGNREPAPDELRRQFAHCKALCAALGLAVLAHTEYEADDLIGTALY 137

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   GF   I+S DKDL QL+      +D  +  +     V  + G+   ++    ALT
Sbjct: 138 RARPAGFRGVIVSADKDLSQLLGEHDEQWDFARGLRWGAAGVKARHGVHAHQIADYLALT 197

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYAETA 240
           GD++DNIPG+ GIG KTAA+LL  +G+L+ +L     +   + R        + E  E A
Sbjct: 198 GDAVDNIPGVGGIGAKTAAILLSHFGSLDELLARVDEVAFLRLRGAAQVAARLREQRELA 257

Query: 241 RLSRKLVMLRTDVPI 255
            L R+L  +  D P+
Sbjct: 258 LLFRQLTTIACDAPL 272


>gi|254480640|ref|ZP_05093887.1| 5'-3' exonuclease, N-terminal resolvase-like domain family [marine
           gamma proteobacterium HTCC2148]
 gi|214039223|gb|EEB79883.1| 5'-3' exonuclease, N-terminal resolvase-like domain family [marine
           gamma proteobacterium HTCC2148]
          Length = 299

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 157/291 (53%), Gaps = 25/291 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  ++L+D S +I+RA+++ P      DG+ +NA+ G+ + L   ++ +R+   +   A 
Sbjct: 2   KQRVWLLDSSIYIFRAWFSMPDQWHTADGMSLNAVYGYASFLCDFVKRTRQ---SPWLAA 58

Query: 64  IFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            FD      FRNE+YP YKA+R    E L  QL   R  T   GIP+   + +EADD +A
Sbjct: 59  AFDESLGSCFRNELYPGYKASRTLPDEALAFQLRACRTLTDLCGIPSYGGERYEADDYLA 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQ-LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T   +A  +  + T+++ DKDL Q LV  +   +D   ++ +D      ++G+PP++   
Sbjct: 119 TLARLARTKKLSTTVVTRDKDLGQLLVENSDQWWDFASDQTLDRAAFQARFGVPPDQFAD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-----------LINASRIKQKKRR 230
              L GDS+D+IPG+PG+G KTAA ++   G L++I           L  ASRIK +   
Sbjct: 179 YLGLVGDSVDDIPGVPGVGAKTAAAVISSLGGLDDIERNIDSVAALPLRGASRIKDR--- 235

Query: 231 ENILEYAETARLSRKLVMLRTDVP--ITIPLEHLILEDCNGPRLISFLKAL 279
             + E+   A LSR+L  L++++P    +P  HL  E     R+ ++L +L
Sbjct: 236 --LQEHWPQALLSRELARLQSEIPGLENLPEFHLTAESTE--RVANYLDSL 282


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 129/525 (24%), Positives = 242/525 (46%), Gaps = 43/525 (8%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLD--SGRSSHDIASIAQKWLS--YTRKE 519
           KI HN ++D   L   GI      D ML + +L    G     +A +A  +L     + E
Sbjct: 153 KIFHNARFDLQFLMGIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADHYLGIKLDKTE 212

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
              S  S+     ++ SQ+   A+ ++ ++L+L+ ++ P L+    L     ++   +  
Sbjct: 213 QTGSWDSA----SLTGSQLAYAAL-DAWILLKLYDVMNP-LLARHGLGRTASIEFACVSA 266

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE---KFNLSSPKQLGDILFTK 636
           +++ E  GI +D +   ++  +  K   +  E +Y  SG    +  L   ++  D+ F  
Sbjct: 267 IARTEYDGINLDLEKWDELRRKTEKQYDAALETLYTYSGTPSCQLTLWGGEEALDVNFES 326

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
             +      + G   T+            P+++ + E+R+ SK  S++   +P  I+  T
Sbjct: 327 NPYVLKLLNRYGIPVTSTSRRSLAPYHSQPLVQALTEYRRHSKSLSSFLHPIPAQIHPVT 386

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R+H  Y      +GR++   PN+Q IP + D     R  F +P  +KLI ADYSQIELR
Sbjct: 387 HRLHPKYMQIGAWSGRMSCYNPNIQQIPREADF----RSCFTAPDGRKLILADYSQIELR 442

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           + A I+  + +    +   D+H + A+ I  + + +V+   R+ AK +NF +I+G+    
Sbjct: 443 VAAQISGDSRMKSACQKGEDLHALTASLISSIPVSQVTKAQRQAAKAVNFGLIFGMGAEG 502

Query: 817 L------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           L      +  + +   EA  +   +F  + GI+ +    +      G   T+ GR+  + 
Sbjct: 503 LKQYAGQSYGVEMTLEEAEQFRSAFFQSYRGINWWHHDLRESHPLEG--RTLTGRKFLF- 559

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
              SP + + ++      N P+QG+AADI + A+  +   +       K++  +HDE++ 
Sbjct: 560 ---SPNTGLADL-----ANTPVQGTAADILKHALGLLASRIRGSD--KKIVAIVHDEILM 609

Query: 931 EVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNIKVSNNW 972
           EVP EE      ++  +ME+A    LP     VP + + K +++W
Sbjct: 610 EVPVEEADDTVVLLKTAMEEAAQAILPD----VPCEADAKAADSW 650


>gi|228900261|ref|ZP_04064492.1| 5'-3' exonuclease [Bacillus thuringiensis IBL 4222]
 gi|228964661|ref|ZP_04125768.1| 5'-3' exonuclease [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794911|gb|EEM42410.1| 5'-3' exonuclease [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228859430|gb|EEN03859.1| 5'-3' exonuclease [Bacillus thuringiensis IBL 4222]
          Length = 288

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|163939495|ref|YP_001644379.1| 5'-3' exonuclease [Bacillus weihenstephanensis KBAB4]
 gi|163861692|gb|ABY42751.1| 5'-3' exonuclease [Bacillus weihenstephanensis KBAB4]
          Length = 288

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLE 258


>gi|218896611|ref|YP_002445022.1| 5'-3' exonuclease family protein [Bacillus cereus G9842]
 gi|218545954|gb|ACK98348.1| 5'-3' exonuclease family protein [Bacillus cereus G9842]
          Length = 288

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCALE 258


>gi|229121222|ref|ZP_04250459.1| 5'-3' exonuclease [Bacillus cereus 95/8201]
 gi|228662341|gb|EEL17944.1| 5'-3' exonuclease [Bacillus cereus 95/8201]
          Length = 301

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 17  VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 72

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 73  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 132

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 133 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPW 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 190 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 248

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  +E
Sbjct: 249 ENLNISLQLAQIHCEVPISCSIE 271


>gi|228914256|ref|ZP_04077872.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228945280|ref|ZP_04107636.1| 5'-3' exonuclease [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228814515|gb|EEM60780.1| 5'-3' exonuclease [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228845460|gb|EEM90495.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 301

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 17  VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 72

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 73  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 132

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 133 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 190 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 248

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  +E
Sbjct: 249 ENLNISLQLAQIHCEVPISCSIE 271


>gi|229090645|ref|ZP_04221878.1| 5'-3' exonuclease [Bacillus cereus Rock3-42]
 gi|228692587|gb|EEL46313.1| 5'-3' exonuclease [Bacillus cereus Rock3-42]
          Length = 301

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 17  VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 72

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 73  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGT 132

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 133 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 190 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLT-KAQRTKIESDL 248

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  +E
Sbjct: 249 ENLNISLQLAQIHCEVPISCSIE 271


>gi|228920391|ref|ZP_04083737.1| 5'-3' exonuclease [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228839313|gb|EEM84608.1| 5'-3' exonuclease [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 288

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|229010991|ref|ZP_04168186.1| 5'-3' exonuclease [Bacillus mycoides DSM 2048]
 gi|228750297|gb|EEM00128.1| 5'-3' exonuclease [Bacillus mycoides DSM 2048]
          Length = 288

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 138/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAIQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV          K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDTNVTAMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLE 258


>gi|229109135|ref|ZP_04238735.1| 5'-3' exonuclease [Bacillus cereus Rock1-15]
 gi|229144283|ref|ZP_04272697.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST24]
 gi|296502252|ref|YP_003663952.1| 5'-3' exonuclease [Bacillus thuringiensis BMB171]
 gi|228639291|gb|EEK95707.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST24]
 gi|228674413|gb|EEL29657.1| 5'-3' exonuclease [Bacillus cereus Rock1-15]
 gi|296323304|gb|ADH06232.1| 5'-3' exonuclease [Bacillus thuringiensis BMB171]
          Length = 288

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|154686447|ref|YP_001421608.1| YpcP [Bacillus amyloliquefaciens FZB42]
 gi|154352298|gb|ABS74377.1| YpcP [Bacillus amyloliquefaciens FZB42]
          Length = 295

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 149/267 (55%), Gaps = 13/267 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N L LVDG + ++R+F+AT +        +G+P N + GF   L   +   +     +H 
Sbjct: 3   NKLLLVDGMALLFRSFFATAVHRNFMINENGIPTNGVNGFLKHLITAVDTFQ----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + T+RN+++ DYKANR + P  L+PQ  L + A +  G   I I+G+EADD I
Sbjct: 59  VCCWDMGSKTYRNDLFQDYKANRSEPPLELIPQFDLAKEAARELGFLNIGIKGYEADDCI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIK-KWGIPPE 177
            T + +   E   +TI++ DKDL+QL++       L   +   K+  + + + + G+PP+
Sbjct: 119 GTLSALYSGEA-EITIVTGDKDLLQLLNHQVQVALLQKGIGNYKVYTDEIFREETGVPPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            ++ ++AL GD+ DN PG+ GIG KTA  L++EY N++ +L + + +  K ++  I +  
Sbjct: 178 ALIDIKALMGDTSDNYPGVKGIGEKTAYKLIREYQNIDRLLESLALLP-KGQQTKIQQSL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLIL 264
           +   LSR+L  +  +VP+   LE  + 
Sbjct: 237 KELELSRQLAEIHCEVPLVCTLEEALF 263


>gi|70726471|ref|YP_253385.1| hypothetical protein SH1470 [Staphylococcus haemolyticus JCSC1435]
 gi|68447195|dbj|BAE04779.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 292

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 144/262 (54%), Gaps = 17/262 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           EN + LVDG + ++R FYAT L ++       +P N I GF   ++  +     E   SH
Sbjct: 2   ENRVLLVDGMALLFRHFYATSLHNQFMYNSKDIPTNGIQGFVRHIFTAI----NEINPSH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV +D    TFRN++Y DYK NRP  PE L+PQ   V+  +  FG   + +  +EADD+
Sbjct: 58  VAVCWDMGQSTFRNDMYTDYKQNRPAPPEELIPQFDYVKEISDQFGFINVGMTNYEADDV 117

Query: 121 IATY--TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG----I 174
           I T   T+    E   V II+ DKDL+Q ++    ++   K   I   + + ++     +
Sbjct: 118 IGTLAKTFSDNNE---VHIITGDKDLLQCINNNVEVWLIKKGFNIYNRYTLARFNEEYQL 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++++ ++A  GDS D  PG+ GIG KTA  L+Q YG++EN+L N  ++   +R++ I 
Sbjct: 175 NPQQLIDIKAFMGDSADGYPGVKGIGEKTALKLIQTYGSVENVLSNIDQLTPAQRKK-IE 233

Query: 235 EYAETARLSRKLVMLRTDVPIT 256
              +   LS++L  + T+VP+ 
Sbjct: 234 ADKDNLTLSKRLAEIYTEVPLN 255


>gi|228938791|ref|ZP_04101392.1| 5'-3' exonuclease [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971673|ref|ZP_04132295.1| 5'-3' exonuclease [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228978282|ref|ZP_04138659.1| 5'-3' exonuclease [Bacillus thuringiensis Bt407]
 gi|228781299|gb|EEM29500.1| 5'-3' exonuclease [Bacillus thuringiensis Bt407]
 gi|228788086|gb|EEM36043.1| 5'-3' exonuclease [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228820869|gb|EEM66893.1| 5'-3' exonuclease [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326939296|gb|AEA15192.1| 5'-3' exonuclease [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 288

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV  +  +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKSVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLE 258


>gi|229166525|ref|ZP_04294278.1| 5'-3' exonuclease [Bacillus cereus AH621]
 gi|228616929|gb|EEK74001.1| 5'-3' exonuclease [Bacillus cereus AH621]
          Length = 288

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIAALT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLE 258


>gi|126653099|ref|ZP_01725228.1| putative 5'-3' exonuclease [Bacillus sp. B14905]
 gi|126590104|gb|EAZ84229.1| putative 5'-3' exonuclease [Bacillus sp. B14905]
          Length = 295

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 148/276 (53%), Gaps = 23/276 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L +VDG + ++R+F+A+  +    R  DG P N   GF     + +  ++    
Sbjct: 1   MTTKPKLLIVDGMALLFRSFFASAAMGHFIRLADGTPTNGAQGFV----RHVLTAQSLMK 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV +D  A TFRN+++  YKANRP  PE +LPQ  + +  +   G     ++G EA
Sbjct: 57  PTHMAVCWDMGAHTFRNDLFDGYKANRPAPPEEMLPQFDMAKNLSLQMGWQNFGVKGMEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---------YDTVKEEKIDIEHV 168
           DD+I +     + E   +T+IS DKDL+QL+ P+T +         YD     +   E+ 
Sbjct: 117 DDLIGSMITKWQDEA-EITVISGDKDLLQLLRPSTEIAFMKKGYTEYDIYTHGRFKEEYS 175

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           I+     P +   ++A  GD+ D  PG+ GIG K A  L+Q YG+++++L +   +K  +
Sbjct: 176 IE-----PAQFAQVKAFMGDTSDGYPGVKGIGPKQALTLIQTYGSIDSVLASLGELKPGQ 230

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           R + I ++ +  +LS +L  ++TDVPI   L  LIL
Sbjct: 231 RTK-IQDHIDMLKLSHELATIQTDVPIEADLTSLIL 265


>gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 930

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 146/296 (49%), Gaps = 26/296 (8%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP---IKTDLGQK------------IRRAFISPPTK 743
           +H  +    T TGRL+ +EPNLQN+P   I   +                RR F++    
Sbjct: 631 LHPNFLQEGTDTGRLSCVEPNLQNLPRNGITAAVAGNDAEEDGDDDLLGFRRCFVAAGGC 690

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+S DY QIELR+LAH+     L +    S DIHR +A  +F    + VS + R  AK 
Sbjct: 691 VLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVF--KKKPVSTEERSLAKR 748

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           + F ++YG  P  LAT + +    A        + FPGI  Y  +     R NG+V T+ 
Sbjct: 749 VVFGVLYGAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVVEEARANGFVRTLS 808

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH--KLATKML 921
           GR  +  +I S   S R+  ER A N+ +QGSAAD+ + AM++V K +     +    +L
Sbjct: 809 GRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLL 868

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN---NWQE 974
            QIHDE+VF V +E +     ++  +M  A    + L VPL V  K  +   N QE
Sbjct: 869 SQIHDEMVFMVRKELLPMVVPLVSSAMSHA----MQLLVPLSVTAKFGDSLGNLQE 920


>gi|307105571|gb|EFN53820.1| hypothetical protein CHLNCDRAFT_136540 [Chlorella variabilis]
          Length = 293

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/252 (36%), Positives = 139/252 (55%), Gaps = 25/252 (9%)

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +HFAV+ D    TFR+E+Y  YK  R   P+ +   +P +    +A  IP I++ G EAD
Sbjct: 35  THFAVVLDARGKTFRHEMYEGYKGQRQACPDAVKEAIPRLLQLLKAMAIPVIQVSGVEAD 94

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---------------YDTVKEEKI 163
           D+I T  Y A +EG AV + S DKD  QL+ P   L               Y  V   + 
Sbjct: 95  DVIGTMAYRAVREGIAVAVASPDKDFFQLLRPGIILLRPPKKPALGERINKYALVPYSQT 154

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D E+   ++G+ PE+ V + AL GD+ DN+PG+ GIG KTA  LL+++G LEN++ +A+ 
Sbjct: 155 DFEN---EYGLQPEQFVDVLALAGDASDNVPGVAGIGPKTAVALLKQHGTLENLIEHAAE 211

Query: 224 IKQKKRRENI--LEYAETARLSRKLVMLRTDV---PITIPLEHLILE--DCNGPRLISFL 276
           +K KK    +   E    ARLS++LV + T +   P+  PL+ L L+  +  G  L+   
Sbjct: 212 VKPKKAALQLSSAEGRAAARLSQQLVRIETALDMPPVREPLDQLRLQLPEDRGVDLLHQF 271

Query: 277 KALEFTKLINRV 288
           + LEF++  +RV
Sbjct: 272 QELEFSRHSSRV 283


>gi|228996795|ref|ZP_04156430.1| 5'-3' exonuclease [Bacillus mycoides Rock3-17]
 gi|229004471|ref|ZP_04162213.1| 5'-3' exonuclease [Bacillus mycoides Rock1-4]
 gi|228756803|gb|EEM06106.1| 5'-3' exonuclease [Bacillus mycoides Rock1-4]
 gi|228762972|gb|EEM11884.1| 5'-3' exonuclease [Bacillus mycoides Rock3-17]
          Length = 288

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/268 (35%), Positives = 138/268 (51%), Gaps = 27/268 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L    Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAAQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTSKLSIPVIGLKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCL---------YDTVKEEKIDIEHVIKKW 172
               Y +E E   V I++ D DL+QLV     +         Y+    EKI  E      
Sbjct: 120 LAKEYASEAE---VYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIREEK----- 171

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  
Sbjct: 172 GVEPWQIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVAAVLENIAALT-KAQRTK 230

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLE 260
           I    E   +S +L  +  +VPI+  LE
Sbjct: 231 IENDLENLNISLQLAQIHCEVPISCSLE 258


>gi|228476126|ref|ZP_04060834.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|314936423|ref|ZP_07843770.1| 5'-3' exonuclease family protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269949|gb|EEK11429.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|313655042|gb|EFS18787.1| 5'-3' exonuclease family protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 294

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 142/256 (55%), Gaps = 13/256 (5%)

Query: 7   LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++R FYAT L         G+P N I GF   ++  +++ +     SH A+
Sbjct: 5   VLLVDGMALLFRHFYATSLHKQFMYNSKGIPTNGIQGFVRHIFTAIKDIK----PSHVAI 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFRN++Y  YK NRP  P+ L+PQ   V+  ++ FG   I +  +EADD+I T
Sbjct: 61  CWDMGQATFRNDMYTSYKQNRPAPPDELIPQFDYVKDISEQFGFVNIGVANYEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIPPEKM 179
              I  K+   V I++ D+D++Q ++    ++   K   I   + + +    + + P ++
Sbjct: 121 LAKIYSKDN-EVHIVTGDRDILQCINEQVEVWLIRKGFNIYHHYTLNRFNEEYALHPLQL 179

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++A  GDS D  PG+ GIG KTA  L+Q YG++EN+L N   +   ++++  ++  E 
Sbjct: 180 IDIKAFMGDSADGYPGVKGIGEKTAIKLIQSYGSVENVLDNIESLTPNQQKKIAID-KEN 238

Query: 240 ARLSRKLVMLRTDVPI 255
             LS++L  + TDVPI
Sbjct: 239 LILSKQLAKIYTDVPI 254


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 149/542 (27%), Positives = 264/542 (48%), Gaps = 69/542 (12%)

Query: 465 IGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSS--HDIASIAQKWLSYTRKEIL 521
           IGHN+K+D K +     I  +   D M+ S +L  G +S  H +++ A++++S    +  
Sbjct: 83  IGHNLKFDLKFLKTNLNILPKIVFDTMIASQILAKGDNSQRHSLSASAKRFVSLDVDKTY 142

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL--------------LH 567
             +KS      +S  Q+ E+A ++ + +  L+   + +L  + L              ++
Sbjct: 143 --QKSPWWAKDLSPEQI-EYAAKDIDALRHLFKEEKNQLNQDNLHKKASGETFKVFGVIN 199

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQD----LLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
               L+   +  + ++E++GI ID++    LLKQ   E   + +  +        + F  
Sbjct: 200 PVAALEMAFLPALVEIELSGIPIDEEEAKKLLKQKELEFQADYMKFK---IKTGADPF-- 254

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            SP Q+ + L  KLK     KT+ G +  ++QD+   +  D   ++ +L+ R   KI   
Sbjct: 255 -SPLQVVNYLTNKLKIKL-PKTEKGSF--SSQDVFLKDYEDIEEVRLLLKLRADKKIIDK 310

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
             + L      R +RV+  +      TGR++SL PNLQNIP      + ++  F      
Sbjct: 311 IKEILQF---TRNKRVYGEFKQIGAATGRMSSLRPNLQNIP------KNLKYLFKPKEGY 361

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           K I ADYSQIELRI A   K   +   F    D+H++ A+ I G + ++++ + R+ AK 
Sbjct: 362 KFIVADYSQIELRIAAQYTKDENMITAFNEGKDLHKLTASIITGKSYDEITKEERQLAKA 421

Query: 804 INFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           INF +IYG+SP  L    +      I   EA  + + YF  +    ++ ++ K  + ++ 
Sbjct: 422 INFGLIYGMSPKSLIEYAKANYGVSINLQEAKKFHENYFKFYKSFKDWHDRVKEHLDKHR 481

Query: 858 Y--VETIFGRR-IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +ET+ GR+ I Y   +             A+N PIQGS +D+ + A++   K   D 
Sbjct: 482 FTTLETLLGRKLIAYKFTD-------------AVNYPIQGSGSDLLKMAVVFFFKERND- 527

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR-VPLKVNIKVSNNWQ 973
            L  K++  +HDE++ EV   +I  A +++  SMEKA   K+ L+ VP+   + VS++W 
Sbjct: 528 -LDAKVVNLVHDEILVEVAANDIEKAKEVLSSSMEKAG--KLILKDVPVAFEMVVSDSWS 584

Query: 974 EE 975
           +E
Sbjct: 585 KE 586


>gi|30019729|ref|NP_831360.1| 5'-3' exonuclease [Bacillus cereus ATCC 14579]
 gi|229043427|ref|ZP_04191143.1| 5'-3' exonuclease [Bacillus cereus AH676]
 gi|229126994|ref|ZP_04256002.1| 5'-3' exonuclease [Bacillus cereus BDRD-Cer4]
 gi|29895274|gb|AAP08561.1| 5'-3' exonuclease [Bacillus cereus ATCC 14579]
 gi|228656475|gb|EEL12305.1| 5'-3' exonuclease [Bacillus cereus BDRD-Cer4]
 gi|228725935|gb|EEL77176.1| 5'-3' exonuclease [Bacillus cereus AH676]
          Length = 288

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPERIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLE 258


>gi|167899174|ref|ZP_02486575.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 257

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 123/204 (60%), Gaps = 1/204 (0%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAYRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIK-G 179

Query: 228 KRRENILEYAETARLSRKLVMLRT 251
              +N+    +   L+RKLV + T
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVET 203


>gi|218233992|ref|YP_002366363.1| 5'-3' exonuclease family protein [Bacillus cereus B4264]
 gi|229149881|ref|ZP_04278109.1| 5'-3' exonuclease [Bacillus cereus m1550]
 gi|218161949|gb|ACK61941.1| 5'-3' exonuclease family protein [Bacillus cereus B4264]
 gi|228633562|gb|EEK90163.1| 5'-3' exonuclease [Bacillus cereus m1550]
          Length = 288

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAEIHCEVPISCSLE 258


>gi|225434094|ref|XP_002275974.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 338

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 160/311 (51%), Gaps = 42/311 (13%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKL-------LQNSRKESI 57
             + L+DG+S IYRA+Y   LL++ H G   +A     N  W L       L     + I
Sbjct: 8   GRVMLIDGTSIIYRAYYK--LLAKLHHGYLSHADG---NGDWVLTIFAALSLIVDVLDFI 62

Query: 58  ASHFAVIFDYPAV------------------TFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
            SH AV+FD+  +                   FR+ +YP YK+NRP  P+ ++  L  ++
Sbjct: 63  PSHVAVVFDHNGIPFGHTSISSKESIMAKGLNFRHTLYPSYKSNRPPTPDTIVQGLQYLK 122

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
            + +A  I  IE+ G EADD+I T +  +   G+ V ++S DKD  Q++SP+  L     
Sbjct: 123 ASIKAMSIKVIEVPGVEADDVIGTLSVRSVDAGYKVRVVSPDKDFFQILSPSLRLLRIAP 182

Query: 160 E----EKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
                    +E   K++G + P + V + +L GD  DNIPG+ GIG   A  L+ ++G L
Sbjct: 183 RGFEMTSFGMEDFAKRYGNLEPSQFVDVISLVGDKSDNIPGVEGIGNVHAVQLITKFGTL 242

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI-TIPL--EHLIL---EDCN 268
           EN+L    ++++++ R+ ++  A+ A LS+ L +LR D+P   +P   E LI    ED N
Sbjct: 243 ENLLQCVDQVQEERIRKALISGADQAVLSKNLALLRCDLPFYMVPFTTEDLIFTKPED-N 301

Query: 269 GPRLISFLKAL 279
           G +  S L A+
Sbjct: 302 GEKFTSLLNAI 312


>gi|224121808|ref|XP_002330658.1| predicted protein [Populus trichocarpa]
 gi|222872262|gb|EEF09393.1| predicted protein [Populus trichocarpa]
          Length = 310

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 140/258 (54%), Gaps = 17/258 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI-------ASHF 61
           L+DG+S IYRA++   LL++ H G   +A     N  W L   S    I        SH 
Sbjct: 2   LIDGTSVIYRAYFK--LLAKVHHGHLTHADG---NGDWVLTIFSALSFIIDVLGFMPSHA 56

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD+  + FR+ +Y  YK+NRP  P+ ++  LP ++ A +A  +  IE+ G EADD+I
Sbjct: 57  VVVFDHDGLNFRHTLYSLYKSNRPPTPDTVIQGLPYLKAAIKAMSVKVIEVPGVEADDVI 116

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKW-GIPP 176
            T    + K+GF V ++S DKD  Q++SP+  L              +E   +K+ G+ P
Sbjct: 117 GTLAVNSVKDGFKVRVVSPDKDFFQILSPSLRLLRIAPRGLEMVSFGMEDFAEKYGGLKP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + V + AL GD  DNIPG+ GIG   A  L+  +G LEN+L    +++ +  R+ + + 
Sbjct: 177 SQFVDVMALMGDKSDNIPGVEGIGVVHAVELISRFGTLENLLKCVDQVEGESIRKALRQN 236

Query: 237 AETARLSRKLVMLRTDVP 254
           A  A LS++L  LR ++P
Sbjct: 237 ANQAVLSKELAKLRCELP 254


>gi|145332811|ref|NP_001078271.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|332645361|gb|AEE78882.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 413

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 30/299 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK-------ESI 57
             + L+DG+S IYRA+Y   LL+R + G   +A     N  W L   S         + +
Sbjct: 94  GRVMLIDGTSIIYRAYYK--LLARLNHGHLAHADG---NADWVLTIFSSLSLLIDVLKFL 148

Query: 58  ASHFAVIFDY------PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE 111
            SH AV+FD+        + FR+ +YP YK+NRP  P+ ++  L  ++ + +A  I  IE
Sbjct: 149 PSHVAVVFDHDGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIE 208

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEH 167
           + G EADD+I T    +   GF V ++S DKD  Q++SP+  L              +E 
Sbjct: 209 VPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMED 268

Query: 168 VIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
             KK+G + P + V + AL GD  DNIPG+ GIG   A  L+  +G LEN+L +   IK+
Sbjct: 269 FAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLLQSVDEIKE 328

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVP-ITIPLEHLIL-----EDCNGPRLISFLKAL 279
            K +E+++  A+ A LS+KL +LR+D+P   +P +   L     ED NG +L S L A+
Sbjct: 329 GKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPED-NGEKLSSLLIAI 386


>gi|206970789|ref|ZP_03231741.1| 5'-3' exonuclease family protein [Bacillus cereus AH1134]
 gi|228957956|ref|ZP_04119694.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229178087|ref|ZP_04305459.1| 5'-3' exonuclease [Bacillus cereus 172560W]
 gi|206734425|gb|EDZ51595.1| 5'-3' exonuclease family protein [Bacillus cereus AH1134]
 gi|228605575|gb|EEK63024.1| 5'-3' exonuclease [Bacillus cereus 172560W]
 gi|228801723|gb|EEM48602.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 288

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLE 258


>gi|42780781|ref|NP_978028.1| 5'-3' exonuclease [Bacillus cereus ATCC 10987]
 gi|42736701|gb|AAS40636.1| 5'-3' exonuclease family protein [Bacillus cereus ATCC 10987]
          Length = 288

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 138/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L   +Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGLKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E      ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPGKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSTVLENITSLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 146/303 (48%), Gaps = 29/303 (9%)

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           QRVH   +L +T TGRL+S  PNLQN P        IR+AF++ P   L+ +DY Q+ELR
Sbjct: 327 QRVHCSLNL-NTETGRLSSRNPNLQNQPALEKDVYFIRKAFMAKPGNILLVSDYGQLELR 385

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNI--------EKVSPQM-- 797
           +LAH+ K   + + F    D H   A  ++         G  +        E  +P +  
Sbjct: 386 VLAHMTKCKAMIEAFRLGGDFHSRTALSMYDYIKEDIAKGTCLLEWDSSKGEPPAPLLKH 445

Query: 798 -----RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
                RR AK +NFS+ YG +   L     +   EA + + +++   P +  + E T   
Sbjct: 446 KYASERRQAKILNFSLAYGKTAHGLQKDFGVSLEEAKEVLAKWYKERPEVKRWQELTIQT 505

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
            ++ G+  T+ GR     +INS          RAAIN PIQG AADI   AM+ + K   
Sbjct: 506 AKETGFTRTLMGRYRPLPDINSKNKWKEGHACRAAINTPIQGGAADIVMMAMLKIEKDER 565

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS-MEKACLPKINLRVPLKVNIKVSNN 971
             +L  +MLLQIHDE++ E P E +  A + +V   M     P   L V L V+   + +
Sbjct: 566 LRRLGFEMLLQIHDEVILEGPIENVAEAKKCLVEDMMHPFARP---LLVDLVVDCNAAPS 622

Query: 972 WQE 974
           W E
Sbjct: 623 WYE 625


>gi|314933626|ref|ZP_07840991.1| 5'-3' exonuclease family protein [Staphylococcus caprae C87]
 gi|313653776|gb|EFS17533.1| 5'-3' exonuclease family protein [Staphylococcus caprae C87]
          Length = 292

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 146/263 (55%), Gaps = 23/263 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + +VDG + ++R FYAT L ++      G+P N + GF   ++  +    KE   +H 
Sbjct: 3   NRVLIVDGMALLFRHFYATSLHNQFMYNSKGIPTNGVQGFVRHIFSAI----KEINPTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRNE++  YK NRP+ P  L+PQ   V+  +Q FG   I +  +EADD+I
Sbjct: 59  AVCWDMGQQTFRNEMFEGYKQNRPEPPAELIPQFDYVKEISQQFGFVNIGVTNYEADDVI 118

Query: 122 AT--YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            +  +TY    E F   II+ D+D++Q ++    ++ T K      +  ++    ++G+ 
Sbjct: 119 GSLAHTYSDNNEVF---IITGDRDILQCINENVEVWLTKKGFTIYNRYTLDRFKNEYGLE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI---KQKKRREN 232
           P++++ ++A  GD+ D  PG+ GIG KTA  L+Q + ++EN++ N S +   +QKK  +N
Sbjct: 176 PKQLIDVKAFMGDTADGYPGVKGIGEKTAIKLIQNHHSVENVIQNISTLIPAQQKKINDN 235

Query: 233 ILEYAETARLSRKLVMLRTDVPI 255
           I        LS+ L  + T VP+
Sbjct: 236 I----NNLHLSKSLAEIHTQVPL 254


>gi|163784610|ref|ZP_02179449.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880118|gb|EDP73783.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 187

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 117/189 (61%), Gaps = 5/189 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DGSS+IYRA+YA P L     G+P  AI GF  M+ KLL     E    + AVIFD
Sbjct: 4   LAIIDGSSYIYRAYYALPPLKSPR-GIPTGAIYGFIRMISKLLN----ELNPDYIAVIFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR++ Y +YK+ R + P+ L  Q+P ++   + FGI  +E +GFEADDIIAT   
Sbjct: 59  APGKTFRHKEYKEYKSQRKETPDDLKVQIPKIKEIIKLFGIKILEKEGFEADDIIATLAK 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +++G  V II+ DKD++QLV     + + V ++  + E V +K+GI PE+ +  QA+ 
Sbjct: 119 KGKEKGLEVYIITPDKDMLQLVEDNIYVLNPVNDKLYNREKVREKYGIYPEQFIYYQAMV 178

Query: 187 GDSIDNIPG 195
           GD IDNI G
Sbjct: 179 GDPIDNIVG 187


>gi|299536301|ref|ZP_07049614.1| 5'-3' exonuclease [Lysinibacillus fusiformis ZC1]
 gi|298728287|gb|EFI68849.1| 5'-3' exonuclease [Lysinibacillus fusiformis ZC1]
          Length = 295

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 146/276 (52%), Gaps = 23/276 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L +VDG + ++R+F+A+  +    R  DG P N   GF     + +  ++    
Sbjct: 1   MTTKPRLLIVDGMALLFRSFFASAAMGHFIRLADGTPTNGAQGFV----RHVLTAQTIMK 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV +D  A TFRN+++  YKANRP  PE +LPQ  + +  +Q  G     ++G EA
Sbjct: 57  PTHMAVCWDMGAHTFRNDLFDGYKANRPAPPEEMLPQFDMAKNLSQQMGWQNFGVKGMEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---------YDTVKEEKIDIEHV 168
           DD+I +     + E   +T+IS DKDL+QL+ P+T +         YD     +   E+ 
Sbjct: 117 DDLIGSMITKWQDEA-DITVISGDKDLLQLLRPSTEIAFMKKGYTEYDIYTHARFKEEYC 175

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           I+     P +   ++A  GDS D  PG+ GIG K A  L+Q YG+++ IL +   +K  +
Sbjct: 176 IE-----PSQFAQVKAFMGDSSDGYPGVKGIGPKQALTLIQTYGSIDKILASLGELKPGQ 230

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           R + I +  +  +LS +L  ++T+VPI      L+L
Sbjct: 231 RTK-IQDNLDMLQLSHELATIQTNVPIDADFTSLVL 265


>gi|167850581|ref|ZP_02476089.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 253

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 121/199 (60%), Gaps = 1/199 (0%)

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I
Sbjct: 2   RKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMI 61

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
           +G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+
Sbjct: 62  EGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKF 121

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N
Sbjct: 122 GVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIK-GVVGDN 180

Query: 233 ILEYAETARLSRKLVMLRT 251
           +    +   L+RKLV + T
Sbjct: 181 LRRALDFLPLARKLVTVET 199


>gi|253988091|ref|YP_003039447.1| exonuclease IX [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779541|emb|CAQ82702.1| exodeoxyribonuclease ix-like protein [Photorhabdus asymbiotica]
          Length = 264

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/269 (35%), Positives = 144/269 (53%), Gaps = 25/269 (9%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             I    N L +L+Q++      +H   
Sbjct: 15  HLLIVDALNLIRRIHAVQGSP------------CIPACENALRQLIQHTNP----THAVA 58

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++I PDYKA R  +P+ L  ++P +R++ +  GI     QG EADD+ 
Sbjct: 59  VFDEEARSNSWRHQILPDYKAGRSPMPDNLKQEMPQIRISFEQQGIACWHAQGHEADDLA 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G+ VTI+STDK   QL+SP  C+ D  ++  +D+  V +++G+ P+++  
Sbjct: 119 ATLAVKVAAAGYHVTIVSTDKGYCQLLSPNICIRDYFQKRWLDMPFVQQEFGVAPQQLPD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--KRRENILEYAET 239
              L G S   IPGIPGIG KTA +LLQ+ G L+N+  N   +KQ+  K R  +    E 
Sbjct: 179 YWGLAGISSSKIPGIPGIGPKTATILLQQSGTLDNLFQN---LKQQPDKWRNKLESNKEI 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCN 268
           A +SRK+  LRTD+ +   L+ L L   N
Sbjct: 236 AFISRKVASLRTDLALNGNLQQLRLTTAN 264


>gi|169826127|ref|YP_001696285.1| 5'-3' exonuclease [Lysinibacillus sphaericus C3-41]
 gi|168990615|gb|ACA38155.1| Probable 5'-3' exonuclease [Lysinibacillus sphaericus C3-41]
          Length = 296

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 159/299 (53%), Gaps = 26/299 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L +VDG + ++R+F+A+  +    R  DG P N   GF     + +  ++     +H AV
Sbjct: 8   LLIVDGMALLFRSFFASAAMGHFIRLADGTPTNGAQGFV----RHVLTAQSLMKPTHMAV 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  A TFRNE++  YKANRP  PE +LPQ  + +  +   G     ++G EADD+I  
Sbjct: 64  CWDMGAHTFRNELFDGYKANRPAPPEEMLPQFDMAKNLSLQMGWQNFGVKGMEADDLIG- 122

Query: 124 YTYIAEKEGFA-VTIISTDKDLMQLVSPTTCL---------YDTVKEEKIDIEHVIKKWG 173
            + IA+ +  A +T+IS DKDL+QL+ P+T +         YD     +   E+ I+   
Sbjct: 123 -SMIAKWQDDADITVISGDKDLLQLLRPSTEIAFMKKGYTEYDIYTHGRFKEEYSIE--- 178

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P +   ++A  GD+ D  PG+ GIG K A  L+Q YG+++++L +   +K  +R + I
Sbjct: 179 --PAQFAQVKAFMGDTSDGYPGVKGIGPKQALTLIQTYGSIDSVLASLGELKPGQRTK-I 235

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
            +  +  +LS +L  ++TDVPI   L  L+L +   P++   ++   +T +     + Y
Sbjct: 236 QDQIDMLKLSHELATIQTDVPIEADLSSLVLPNYE-PQIFKEMEESGYTLIAKHARSLY 293


>gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 912

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 150/314 (47%), Gaps = 30/314 (9%)

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
           +++  +T RVHT  ++ +T TGRL++  P+LQN P        IR+AF   P   L+ AD
Sbjct: 598 DNLRGKTGRVHTALNI-NTETGRLSARRPSLQNQPALEKDRYGIRKAFTCRPGNILVVAD 656

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-------------------GVNI 790
           Y Q+ELR+LAH+A    + + FE   D H   A  ++                   G + 
Sbjct: 657 YGQLELRLLAHMAGCASMREAFEAGGDFHSRTAMGMYKEIREAMDEGKCLLEYGSEGYDE 716

Query: 791 EKVS-PQM--------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           ++ + P +        RR AK +NFSI YG +   LA    +   EA D +  ++   P 
Sbjct: 717 DEANRPALVKDMFASERRKAKVLNFSIAYGKTAHGLAKDFGVSTKEAEDTVNLWYSDRPE 776

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  + E       + G V T+ GR  +  E +S     R    RA+IN PIQG AADI  
Sbjct: 777 VRAWQEVQHANATKLGKVSTLLGRHRNLPEASSRDEMRRQHALRASINTPIQGGAADIAM 836

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL-RV 960
            AM+ +H+     ++  ++L+QIHDE++ E PEE    A  ++   ME       NL  V
Sbjct: 837 LAMMQIHRCPRLKEIGYELLMQIHDEVILEGPEEHKDEALALVKRHMENPFNDHENLCDV 896

Query: 961 PLKVNIKVSNNWQE 974
            L V+   +  W E
Sbjct: 897 DLNVDGNYAKTWFE 910


>gi|228990698|ref|ZP_04150663.1| 5'-3' exonuclease [Bacillus pseudomycoides DSM 12442]
 gi|228769224|gb|EEM17822.1| 5'-3' exonuclease [Bacillus pseudomycoides DSM 12442]
          Length = 288

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/268 (35%), Positives = 138/268 (51%), Gaps = 27/268 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L    Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAAQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTSKLFIPVIGLKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCL---------YDTVKEEKIDIEHVIKKW 172
               Y +E E   V I++ D DL+QLV     +         Y+    EKI  E      
Sbjct: 120 LAKEYASEAE---VYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIREEK----- 171

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  
Sbjct: 172 GVEPWQIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVAAVLENIAALT-KAQRTK 230

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLE 260
           I    E   +S +L  +  +VPI+  LE
Sbjct: 231 IENDLENLNISLQLAQIHCEVPISCSLE 258


>gi|13508118|ref|NP_110067.1| 5'-3' exonuclease (complete) [Mycoplasma pneumoniae M129]
 gi|2494184|sp|P75403|EX53_MYCPN RecName: Full=5'-3' exonuclease
 gi|1674147|gb|AAB96106.1| 5'-3' exonuclease [Mycoplasma pneumoniae M129]
 gi|301633305|gb|ADK86859.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma pneumoniae FH]
          Length = 291

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 154/279 (55%), Gaps = 19/279 (6%)

Query: 9   LVDGSSFIYRAFYATPL---LSRKHDGLPVN-AIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L+DG+S  YRA++AT      ++ H+ LP N AI     M W LLQ+ + +     + VI
Sbjct: 6   LIDGNSLAYRAYFATWQQVEFAKLHN-LPFNNAIRTMLMMCWNLLQSKQYD-----YGVI 59

Query: 65  -FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+++Y +YK+ R K P  LL Q+P+V+ + +  G    E  GFEADD+I +
Sbjct: 60  SFDTKAPTFRDQLYSEYKSKRSKTPSELLVQIPVVKESLRHLGFLVCEQDGFEADDLIGS 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK-----WGIPPEK 178
           Y  +  +   AV I S+D+DL+QLV   T ++  VK  K   E+         +G+ P++
Sbjct: 120 YARLMTQNNVAVDIYSSDRDLLQLVDSMTSVWLCVKGTKEMKEYNTDNFAEQFFGLTPKQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YA 237
           ++  + L GD+ DN+ GI GIG K    LL++YG ++NI  N  ++   K  + IL+   
Sbjct: 180 VIEYKGLVGDNSDNLTGIKGIGPKKGIDLLKQYGTIDNIFANFDKL--SKALQTILQGQI 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           +TA+    L  ++TD+ +   + H  L+  +   L+  L
Sbjct: 238 DTAKKFSFLASIKTDIKLNDDIVHAALKPIDKQALLELL 276


>gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
          Length = 2215

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 222/479 (46%), Gaps = 68/479 (14%)

Query: 541  HAIENSNVILQLWLLLRPKL---IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            +A  ++ V+L L   L+ KL    +++++ V  R  +P++     ME+ G+QI+    K+
Sbjct: 1760 YAARDAAVMLPLQQRLQRKLEAYDLQEVMDVEMRCLRPVV----AMELNGMQIEHARWKE 1815

Query: 598  VSAEISKNLLSLEENIY---DLSGEKFNLSSPKQLGDILF---------------TKLKF 639
            + A + K  +   + +     +     N +S KQ+ D L                ++   
Sbjct: 1816 LEAHLRKEEVKARKRLAAELHVDETTVNFNSQKQMLDALRAIGIPSPPPDRPASRSRGAR 1875

Query: 640  PSGAKTKTGQWKTTAQDLEQINCGDN-----------PIIKNILEWRQLSKIKSTYADSL 688
            PS    + G       +LE     D            P ++ + ++R+ +K  +T+ D L
Sbjct: 1876 PSAFSEQRGLGFDQPAELEDTLLKDTSDGTLARLTQYPAVQALRDYRKAAKAITTFVDKL 1935

Query: 689  PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK----- 743
            P HIN  T ++H         +GR +   PNLQ IP +    ++ R  F+ P  K     
Sbjct: 1936 PQHINSVTGKIHCSLHQCGAGSGRFSCDSPNLQQIPRE----RRFRACFV-PSAKVAGRP 1990

Query: 744  -KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             K I AD+SQIELRI A +A    + + ++   D+H++ A+ I       +S   R+ AK
Sbjct: 1991 GKFIIADFSQIELRIAADLACDERMIEAYQKGEDLHKLTASLILNKPASTLSKADRQLAK 2050

Query: 803  TINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
             +NF +IYG+S  R       A  +++   EA  +  +YF  + GI  + ++ K    Q 
Sbjct: 2051 AVNFGLIYGMSADRFRGYASSAYGVQMTPQEARAFHAKYFSSYAGITRWHQRQK--AEQP 2108

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
                T  GRR  +D     KS          +N PIQG++ADIT+ +++ +   L    L
Sbjct: 2109 RETRTRAGRRALFDYFAFTKS----------LNYPIQGTSADITKESLVRLQDKLA--PL 2156

Query: 917  ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              ++++ +HDE++ EVPE++     +I++ +ME A    +   VP      ++++W ++
Sbjct: 2157 GGRLVMCVHDEIIAEVPEDKAEEGLRILIETMEAAGNKFLRF-VPCVAEGAIADSWADK 2214


>gi|229132491|ref|ZP_04261342.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST196]
 gi|228650987|gb|EEL06971.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST196]
          Length = 288

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +   I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASLT-KAQHTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLE 258


>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
 gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
          Length = 968

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 148/305 (48%), Gaps = 32/305 (10%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVH   ++ +T TGRL++  P+LQN P        IR+AF + P   L+ ADY Q+ELR+
Sbjct: 662 RVHGALNI-NTETGRLSARRPSLQNQPALEKDRYGIRKAFTAGPGNVLVVADYGQLELRL 720

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIF---------------------GVNIEKVSPQ 796
           LAH+A    + + FE   D H   A  ++                     GV+ EK  P 
Sbjct: 721 LAHMAGCKSMQEAFEAGGDFHSRTALGMYSNIKDAIAKGEVVLEYGEQEEGVD-EKDRPA 779

Query: 797 M--------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
           +        RR AK +NFSI YG +   L+        EAA+ ++ ++   P + ++ E 
Sbjct: 780 LVKDVFASERRKAKVLNFSIAYGKTAHGLSKDWGTSLEEAANTVELWYSDRPEVRDWQEV 839

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
            K    +   V T+ GR  +  + +S   + ++   RA+IN PIQG AADI   AM+ + 
Sbjct: 840 QKKMAVEKNLVRTLLGRVRNLPDASSKNEAFKSHALRASINTPIQGGAADIAMLAMLQIQ 899

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN-LRVPLKVNIK 967
           +     +L  K+L+QIHDE++ E PEE    A  +  + ME      +N L V L V+  
Sbjct: 900 RCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTKYHMENPFPGHVNLLDVALAVDGD 959

Query: 968 VSNNW 972
            +  W
Sbjct: 960 YAKTW 964


>gi|168027127|ref|XP_001766082.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682725|gb|EDQ69141.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 310

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 155/292 (53%), Gaps = 26/292 (8%)

Query: 7   LFLVDGSSFIYRAFYA----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L+DG++ +YRA++         S K  G   + +      L  +++    ++  +H A
Sbjct: 1   LLLLDGNAILYRAYFKIMAKVQYGSLKDMGSEADWVLTVFTALSTMIR--LLDTKPTHVA 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FDY  +TFR+E+YP YK+ R   P+ +   L  ++ A  + GI  +E+ G EADD IA
Sbjct: 59  AAFDYKGLTFRHELYPAYKSGRAPTPDTVCQALSCLKPALLSLGISVVEVAGVEADDAIA 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG-IPPE 177
            +   A   G  V+I S DKD  Q++SP   L   V          ++   K++G I P 
Sbjct: 119 AFAVRAVDAGMHVSIASPDKDFFQIISPRLRLLRFVPRGSGIVPFGVKEFQKRFGDIQPW 178

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + + AL GD +DNIPG+PG+G  TA  L++EYG +EN+L N  ++K K+ RE+++   
Sbjct: 179 QYLEVLALMGDKVDNIPGLPGVGEVTALKLVKEYGTVENLLENRDKVKLKRPRESLMADD 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLI---LED--C-----NGPRLISFLKAL 279
               +S+KL+ LR D+P      H++   L D  C     NG + I  +KA+
Sbjct: 239 GGILMSKKLLSLRLDLP-----NHMLPYSLGDLRCQSPKDNGDQFIKLIKAM 285


>gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299]
 gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299]
          Length = 972

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 142/305 (46%), Gaps = 29/305 (9%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVH   ++ +T TGRL++  P+LQN P        IR+AF + P   LI ADY Q+ELR+
Sbjct: 667 RVHAALNI-NTETGRLSARRPSLQNQPALEKDRYGIRKAFSAEPGNILIVADYGQLELRL 725

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIF---------------------GVNIEKVS-- 794
           LAH+A    + + FE   D H   A  ++                         EK +  
Sbjct: 726 LAHMAGCVSMREAFEAGGDFHSRTAMGMYKEIREAMEQGKCLLEYGDIDDDAGGEKPALV 785

Query: 795 ----PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
                  RR AK +NFSI YG +   LA    +   EA + +  ++   P + E+     
Sbjct: 786 KDMFASERRKAKVLNFSIAYGKTAHGLAKDFGVSTREAEETVDLWYSDRPEVREWQAVQH 845

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
               + G V T+ GR  +  E +S     R    RA+IN PIQG AADI   AMI +H+ 
Sbjct: 846 KKAAEKGKVNTLLGRHRNLPEASSSDEMRRGHALRASINTPIQGGAADIAMLAMIQIHRC 905

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL-RVPLKVNIKVS 969
               +L  K+L+QIHDE++ E PEE    A  ++   MEK      NL  V L V+   +
Sbjct: 906 PRLRELGFKLLMQIHDEVILEGPEEHRDEALALVKLHMEKPFNDHENLCDVELSVDGDYA 965

Query: 970 NNWQE 974
             W E
Sbjct: 966 KTWFE 970


>gi|229078862|ref|ZP_04211415.1| 5'-3' exonuclease [Bacillus cereus Rock4-2]
 gi|228704544|gb|EEL56977.1| 5'-3' exonuclease [Bacillus cereus Rock4-2]
          Length = 288

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+     K L  + +    +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGY----MKHLLTATQAIEPTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    I  I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSISVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV  +  +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKSVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLT-KAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E   +S +L  +  +VPI+  LE
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLE 258


>gi|223043247|ref|ZP_03613294.1| DNA polymerase I (POL I) [Staphylococcus capitis SK14]
 gi|222443458|gb|EEE49556.1| DNA polymerase I (POL I) [Staphylococcus capitis SK14]
          Length = 292

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 147/263 (55%), Gaps = 23/263 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L ++      G+P N + GF   ++  +    KE   +H 
Sbjct: 3   NRVLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGVQGFVRHIFSAI----KEINPTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRNE++  YK NRP+ P  L+PQ   V+  +Q FG   I +  +EADD+I
Sbjct: 59  AVCWDMGQQTFRNEMFEGYKQNRPEPPAELIPQFDYVKEISQQFGFVNIGVTNYEADDVI 118

Query: 122 AT--YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            +  ++Y    E F   II+ D+D++Q ++    ++ T K      +  ++    ++G+ 
Sbjct: 119 GSLAHSYSDNNEVF---IITGDRDILQCINENVEVWLTKKGFTIYNRYTLDRFKDEYGLE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI---KQKKRREN 232
           P++++ ++A  GD+ D  PG+ GIG KTA  L+Q + ++EN++ N S +   +QKK  +N
Sbjct: 176 PKQLIDVKAFMGDTADGYPGVKGIGEKTAIKLIQNHHSVENVIQNISTLTPAQQKKINDN 235

Query: 233 ILEYAETARLSRKLVMLRTDVPI 255
           +       +LS+ L  + T VP+
Sbjct: 236 M----NNLQLSKSLAEIHTQVPL 254


>gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1257

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 146/297 (49%), Gaps = 28/297 (9%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI----------------RRAFISPPT 742
            +H  +    T TGRL+ +EPNLQN+P +  +   +                RR F++   
Sbjct: 958  LHPNFLQEGTDTGRLSCVEPNLQNLP-RNGIAAAVAGNDAEEDGEEDLLGFRRCFVATGG 1016

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
              L+S DY QIELR+LAH+     L      S DIHR +A  +F    + VS + R  AK
Sbjct: 1017 CVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVF--KKKPVSTEERSLAK 1074

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             + F ++YG  P  LAT + +    A        + FPGI  Y  +     R NG+V T+
Sbjct: 1075 RVVFGVLYGAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEARANGFVRTL 1134

Query: 863  FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH--KLATKM 920
             GR  +  +I S   S R+  ER A N+ +QGSAAD+ + AM++V K +     +    +
Sbjct: 1135 SGRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSL 1194

Query: 921  LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN---NWQE 974
            L QIHDE+VF V +E +     ++  +M  A    + L VPL V  K  +   N QE
Sbjct: 1195 LSQIHDEMVFMVRKELLPMVVPLVSSAMSHA----MQLLVPLSVTAKFGDSLGNLQE 1247


>gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum]
 gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            infantum JPCM5]
          Length = 1257

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 146/297 (49%), Gaps = 28/297 (9%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI----------------RRAFISPPT 742
            +H  +    T TGRL+ +EPNLQN+P +  +   +                RR F++   
Sbjct: 958  LHPNFLQEGTDTGRLSCVEPNLQNLP-RNGIAAAVAGNDAEEDGEEDLLGFRRCFVATGG 1016

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
              L+S DY QIELR+LAH+     L      S DIHR +A  +F    + VS + R  AK
Sbjct: 1017 CVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVF--KKKPVSTEERSLAK 1074

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             + F ++YG  P  LAT + +    A        + FPGI  Y  +     R NG+V T+
Sbjct: 1075 RVVFGVLYGAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEARANGFVRTL 1134

Query: 863  FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH--KLATKM 920
             GR  +  +I S   S R+  ER A N+ +QGSAAD+ + AM++V K +     +    +
Sbjct: 1135 SGRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSL 1194

Query: 921  LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN---NWQE 974
            L QIHDE+VF V +E +     ++  +M  A    + L VPL V  K  +   N QE
Sbjct: 1195 LSQIHDEMVFMVRKELLPMVVPLVSSAMSHA----MQLLVPLSVTAKFGDSLGNLQE 1247


>gi|168830347|gb|ACA34443.1| Exo [uncultured bacterium pTW3]
          Length = 306

 Score =  147 bits (372), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 88/255 (34%), Positives = 131/255 (51%), Gaps = 9/255 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P      DG P NA+ GF   L +LL+  R   IA  F    D
Sbjct: 10  LYLVDASLYVFRAWHSMPDEFHDADGWPTNAVHGFARFLLELLERERPRHIAVAFDEALD 69

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FRN +YP YKANR   PE L  Q    +    A G+  +  + +EADD+I +  +
Sbjct: 70  ---SCFRNALYPAYKANREPAPEALKRQFGQCKALCGALGLVTLAHREYEADDLIGSALH 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I+S DKDL QL+      +D  + ++     V  + G+   ++    AL 
Sbjct: 127 HARTHGHRGVIVSADKDLSQLLGLHDEQWDFARGQRWGAAGVKARHGVDAHQIADYLALC 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYAETA 240
           GD++DNIPG+PGIG KTAA+LL  +G+L+ +L     I   + R        +  + E A
Sbjct: 187 GDAVDNIPGVPGIGAKTAAVLLAHFGSLDALLARIDEIPFLRFRGAAAAAAKLRAHREQA 246

Query: 241 RLSRKLVMLRTDVPI 255
            L R+L  +  D P+
Sbjct: 247 LLCRQLSTIALDAPL 261


>gi|60117346|gb|AAX14438.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 193

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 123/192 (64%), Gaps = 1/192 (0%)

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+  ME  GI ++   L+++S +  + +  LE+ IY+L+GE+FN++SPKQL D+LF K
Sbjct: 1   MKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNK 60

Query: 637 LKFPSGAKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           +      K+K     +T  + LE +      I   IL WR LSK+K TY D+L   ++  
Sbjct: 61  MGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPL 120

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
             R+HT +S  +T TGRL+S  PNLQNIPI+++ G  IR+AFI+P   K+ISADYSQIEL
Sbjct: 121 DGRIHTSFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIEL 180

Query: 756 RILAHIAKITPL 767
           R+LAH+A +   
Sbjct: 181 RLLAHVANVAAF 192


>gi|27904863|ref|NP_777989.1| putative 5'-3' exonuclease [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|38372206|sp|Q89AD1|EX53_BUCBP RecName: Full=5'-3' exonuclease
 gi|27904261|gb|AAO27094.1| putative 5'-3' exonuclease [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 302

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/262 (38%), Positives = 145/262 (55%), Gaps = 11/262 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +K  +  L+DG+S++YRA+YA  L  + +   P  AI G  NML  +L     +   S+ 
Sbjct: 5   KKNVNYLLIDGTSYLYRAYYAF-LKFKNNFNKPCGAIYGMLNMLRSMLL----KYPYSNI 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            VIFD P  TFRNE++  YK NRPK+P  L  Q+  +    +  GIP I I   EADDII
Sbjct: 60  VVIFDSPQKTFRNELFIPYKKNRPKMPNDLKEQILPIHHIIKHIGIPIISIPHVEADDII 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T      K+ + + I + DKDL QLV+    +        +D   V KK+GI P+ +  
Sbjct: 120 GTLATKLYKKKYFILISTNDKDLAQLVNIHIHVLIGTSNIVLDESKVKKKYGIIPKLIPD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILE 235
           L  L GD+ DNIPG+P +G KTA +LL+ +G+LENI  N  +I      K K    N+  
Sbjct: 180 LLGLMGDNSDNIPGVPTVGKKTALILLKTFGSLENIYNNIEKIPKCLIKKAKTIYNNLHT 239

Query: 236 YAETARLSRKLVMLRTDVPITI 257
           Y + A LS+KL  ++TD+ + I
Sbjct: 240 YKKLAFLSQKLATIKTDINVNI 261


>gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1]
 gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1]
          Length = 779

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 134/568 (23%), Positives = 252/568 (44%), Gaps = 71/568 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I     ++Q+V K+   G  S  + TD +D  H +   + + +  QK         I+  
Sbjct: 67  ITEEAKLEQYVDKMIEDGIGSIDVETDGLDTIHDELAGVCLYSPSQK--------GIYAP 118

Query: 431 LSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFE 487
           ++ H S  +    KN ++ E +  + +   +     I HN K+D K +  R G+ M    
Sbjct: 119 VN-HVSNMTKMRIKNQISPEFMKKMLQRIVDSGIPVIYHNSKFDMKSIYWRLGVKMNEPA 177

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWL-SYTRKEILKSRK--SSIPIDKISDSQVQEHAIE 544
               ++ +L +   SH + S+  K++ +    E+ K       IP   I       +A  
Sbjct: 178 WDTYLAAMLLNENESHSLKSLHSKYVRNEENAEVAKFNDLFKGIPFSLIPPDVAYMYAAY 237

Query: 545 NSNVILQLWLLLRPKLI----------VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +     +L+      L           +EK+  V   ++ P+I V+  ME+ G+ +DQD 
Sbjct: 238 DPLQTFELYEFQEQYLTPGTEQCEEYNLEKVSWVLHNIEMPLIKVLFDMEVYGVDLDQDK 297

Query: 595 LKQVSAEISKNLLSLEENIYDLSGE---------------------------KFNLSSPK 627
           L ++  + + N+   E+    L  E                             ++SSP 
Sbjct: 298 LAEIREQFTANMNEAEQEFQQLVSEWQPEIEELRQTNFQSYQKLEMDARGRVTVSISSPT 357

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  + +  +   S  + K    + T + +  +   DN I K +L++R+ +K+ STY  +
Sbjct: 358 QLAILFYDIMGLKSPERDKP---RGTGESI--VEHFDNDISKALLKYRKYAKLVSTYT-T 411

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L  H+ K   R+HT +      TGR++S  PNLQNIP + + G  +R+ F +     +I 
Sbjct: 412 LDQHLAKPDNRIHTTFKQYGAKTGRMSSENPNLQNIPSRGE-GAVVRQIFAASEGHYIIG 470

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-----------SPQ 796
           +DYSQ E R LA ++    +   +E +LD++ ++ ++++GV  E+              +
Sbjct: 471 SDYSQQEPRSLAELSGDESMRHAYEQNLDLYSVIGSKLYGVPYEECLEFYPDGTTNKEGK 530

Query: 797 MRRHA-KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           +RR++ K++   ++YG     +A Q+ +   EA   I+ +F  FP + +YI   +   + 
Sbjct: 531 LRRNSVKSVLLGLMYGRGANSIAEQMNVSVKEANKVIEDFFTEFPKVADYIIFVQQQAQD 590

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNIN 883
            GYV+T  GRR    +++ P+     I+
Sbjct: 591 LGYVQTATGRRRRLPDMSLPEYEFEYID 618



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           +R  +N+ IQG+AAD+T+ AMI VH   E  +L   +++ +HDEL+ EVP +     ++ 
Sbjct: 686 QRQCLNSVIQGTAADMTKYAMIKVHNDAELKELGFHLMIPVHDELLGEVPIKNAKRGAER 745

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +   M +A    I+L  P+K +  +   W  E
Sbjct: 746 LTEVMIEAAKDIISL--PMKCDPSIVERWYGE 775


>gi|319400795|gb|EFV89014.1| DNA polymerase I domain protein [Staphylococcus epidermidis FRI909]
          Length = 292

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 144/260 (55%), Gaps = 21/260 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++R FYAT L ++      G+P N I GF   ++  +    KE   +H AV
Sbjct: 5   VLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGIQGFVRHIFSAI----KEIEPTHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFRNE+Y  YK NRP  P+ L+PQ   V+  +  FG   +  + +EADDII +
Sbjct: 61  CWDMGQETFRNEMYDGYKQNRPAPPDELIPQFDYVKEISHQFGFVNVGKRNYEADDIIGS 120

Query: 124 Y--TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
              TY  E E   V II+ D+DL+Q ++    ++   K     ++  ++  I ++G+ P+
Sbjct: 121 LAETYSQEHE---VYIITGDRDLLQCINHNVEVWLIKKGFTIYQRYTLDRFIDEYGLNPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKRRENILE 235
           +++ ++A  GD+ D   G+ GIG KTA  L+Q +G +EN++ N S +   Q+K+  N L 
Sbjct: 178 QLIDVKAFMGDTADGYSGVKGIGEKTAIKLIQNHGTVENVVNNLSSLTPAQQKKITNNLN 237

Query: 236 YAETARLSRKLVMLRTDVPI 255
           +     LS+ L  + T VPI
Sbjct: 238 H---LHLSKSLAEIYTKVPI 254


>gi|242242723|ref|ZP_04797168.1| 5'-3' exonuclease [Staphylococcus epidermidis W23144]
 gi|242233859|gb|EES36171.1| 5'-3' exonuclease [Staphylococcus epidermidis W23144]
          Length = 292

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 144/260 (55%), Gaps = 21/260 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++R FYAT L ++      G+P N I GF   ++  +    KE   +H AV
Sbjct: 5   VLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGIQGFVRHIFSAI----KEIEPTHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFRNE+Y  YK NRP  P+ L+PQ   V+  +  FG   +  + +EADDII +
Sbjct: 61  CWDMGQETFRNEMYDGYKQNRPAPPDELIPQFDYVKEISHQFGFVNVGKRNYEADDIIGS 120

Query: 124 Y--TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
              TY  E E   V II+ D+DL+Q ++    ++   K     ++  ++  I ++G+ P+
Sbjct: 121 LAETYSQEHE---VYIITGDRDLLQCINHNVEVWLIKKGFTIYQRYTLDRFIDEYGLNPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKRRENILE 235
           +++ ++A  GD+ D   G+ GIG KTA  L+Q +G +EN++ N S +   Q+K+  N L 
Sbjct: 178 QLIDVKAFMGDTADGYSGVKGIGEKTAIKLIQNHGTVENVVNNLSSLTPAQQKKITNNLN 237

Query: 236 YAETARLSRKLVMLRTDVPI 255
           +     LS+ L  + T VPI
Sbjct: 238 H---LHLSKSLAEIYTKVPI 254


>gi|27468048|ref|NP_764685.1| putative 5'-3' exonuclease [Staphylococcus epidermidis ATCC 12228]
 gi|57866934|ref|YP_188589.1| 5'-3' exonuclease [Staphylococcus epidermidis RP62A]
 gi|251810870|ref|ZP_04825343.1| 5'-3' exonuclease [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876124|ref|ZP_06284991.1| 5'-3' exonuclease, SAM C-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366589|ref|ZP_06613266.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315593|gb|AAO04727.1|AE016747_224 putative 5'-3' exonuclease [Staphylococcus epidermidis ATCC 12228]
 gi|57637592|gb|AAW54380.1| 5'-3' exonuclease, putative [Staphylococcus epidermidis RP62A]
 gi|251805550|gb|EES58207.1| 5'-3' exonuclease [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295149|gb|EFA87676.1| 5'-3' exonuclease, SAM C-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319358|gb|EFE59727.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329731550|gb|EGG67912.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU144]
 gi|329735214|gb|EGG71506.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU045]
 gi|329737280|gb|EGG73534.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU028]
          Length = 292

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 144/260 (55%), Gaps = 21/260 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++R FYAT L ++      G+P N I GF   ++  +    KE   +H AV
Sbjct: 5   VLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGIQGFVRHIFSAI----KEIEPTHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFRNE+Y  YK NRP  P+ L+PQ   V+  +  FG   +  + +EADDII +
Sbjct: 61  CWDMGQETFRNEMYDGYKQNRPAPPDELIPQFDYVKEISHQFGFVNVGKRNYEADDIIGS 120

Query: 124 Y--TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
              TY  E E   V II+ D+DL+Q ++    ++   K     ++  ++  I ++G+ P+
Sbjct: 121 LAETYSQEHE---VYIITGDRDLLQCINHNVEVWLIKKGFTIYQRYTLDRFIDEYGLNPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKRRENILE 235
           +++ ++A  GD+ D   G+ GIG KTA  L+Q +G +EN++ N S +   Q+K+  N L 
Sbjct: 178 QLIDVKAFMGDTADGYSGVKGIGEKTAIKLIQNHGTVENVVNNLSSLTPAQQKKITNNLN 237

Query: 236 YAETARLSRKLVMLRTDVPI 255
           +     LS+ L  + T VPI
Sbjct: 238 H---LHLSKSLAEIYTKVPI 254


>gi|222151334|ref|YP_002560490.1| hypothetical protein MCCL_1087 [Macrococcus caseolyticus JCSC5402]
 gi|222120459|dbj|BAH17794.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 311

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 155/285 (54%), Gaps = 22/285 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++ ++DG + ++R F+AT L     R H+G+P N + GF       ++++     A+H  
Sbjct: 24  NVLIIDGMALLFRHFFATSLHGNYMRNHEGIPTNGVQGFIKHAISAIEDTH----AAHVI 79

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D  A TFRN+I  +YKA+RP   E ++PQ  + +  ++  G   I +  FEADD+I 
Sbjct: 80  VCWDMGAKTFRNDIDSNYKAHRPAPQEEMIPQFEMAQRVSEELGFVNIGVHQFEADDVIG 139

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T     +KE + +T+IS D+DL+Q++     ++   K      K D++   +++ + P++
Sbjct: 140 TLAKYLDKE-YHITVISGDRDLLQVLEENIEIWLIKKGFSIYSKYDLKRFEEEYHLKPKQ 198

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++A  GD+ D  PG+ GIG KTA  L+Q Y ++  +L +   +  K ++  I    +
Sbjct: 199 LIDVKAFMGDNADGYPGVKGIGEKTALKLIQSYQDVNGVLASLEELP-KGQQNKIATSID 257

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
             + SR+L  + T+VPI        LED    + +S++   EF +
Sbjct: 258 ALKTSRRLAEIHTEVPIN-------LEDIK--KRMSYVANFEFIR 293


>gi|73662613|ref|YP_301394.1| 5'-3' exonuclease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495128|dbj|BAE18449.1| putative 5'-3' exonuclease [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 293

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 138/256 (53%), Gaps = 13/256 (5%)

Query: 7   LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L+DG + ++R F+AT L     R   G+P N + GF   ++  +     E   SH AV
Sbjct: 5   ILLIDGMALLFRHFFATSLHKQFMRNSSGIPTNGVQGFVRHVFTAI----NEIQPSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFRN+++  YK NRP  PE L+PQ   V+  +  FG   I +Q +EADD+I T
Sbjct: 61  CWDMGKSTFRNDMFDGYKQNRPAPPEELIPQFDYVKEVSNQFGFVNIGVQNYEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI----DIEHVIKKWGIPPEKM 179
                  +   V +++ DKD++Q ++P   ++ T K   I     ++    ++G+ P ++
Sbjct: 121 LAQQYSDQN-QVYVVTGDKDILQCINPNVEIWLTKKGFNIYNRYTLDRFQSEYGLNPLQL 179

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++A  GD+ D  PG+ GIG KTA  L+Q +G++E++L NA       +R  I    + 
Sbjct: 180 IDVKAFMGDTADGYPGVKGIGEKTAIKLIQNHGSVESVL-NALDQLTPGQRTKIEANIDN 238

Query: 240 ARLSRKLVMLRTDVPI 255
            +LS+ L  + T VP+
Sbjct: 239 LKLSKTLAEIHTKVPL 254


>gi|297816476|ref|XP_002876121.1| hypothetical protein ARALYDRAFT_485561 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297321959|gb|EFH52380.1| hypothetical protein ARALYDRAFT_485561 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 454

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 161/311 (51%), Gaps = 42/311 (13%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK-------ESI 57
             + L+DG+S IYRA+Y   LL+R + G   +A     N  W L   S         + +
Sbjct: 123 GRVMLIDGTSIIYRAYYK--LLARLNHGHLAHADG---NADWVLTIFSSLSLLIDVLKFL 177

Query: 58  ASHFAVIFDYPAV------------------TFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
            SH AV+FD+  V                   FR+ +YP YK+NRP  P+ ++  L  ++
Sbjct: 178 PSHVAVVFDHDGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLK 237

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
            + +A  I  IE+ G EADD+I T    +   GF V ++S DKD  Q++SP+  L     
Sbjct: 238 ASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTP 297

Query: 160 E----EKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
                    +E   KK+G + P + V + AL GD  DNIPG+ GIG   A  L+  +G+L
Sbjct: 298 RGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGSL 357

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLEHLIL-----EDCN 268
           EN+L +   IK+ K +E+++  A+ A LS+KL +LR+D+P   +P +   L     ED N
Sbjct: 358 ENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPED-N 416

Query: 269 GPRLISFLKAL 279
           G +L S L A+
Sbjct: 417 GEKLSSLLIAI 427


>gi|285017276|ref|YP_003374987.1| exonuclease [Xanthomonas albilineans GPE PC73]
 gi|283472494|emb|CBA14999.1| putative exonuclease protein [Xanthomonas albilineans]
          Length = 307

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 11/288 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+D S +++RA++A P   +   G P NA+ GF   L  LL+  R +    H  V FD
Sbjct: 11  LYLIDASLYVFRAWHAIPDEFQDAQGWPTNAVHGFARFLLDLLERERPQ----HIVVAFD 66

Query: 67  YPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               T FR+ +YP YKANR   P+ L  Q    +    A G+  +    +EADD+I +  
Sbjct: 67  EALDTCFRHRLYPAYKANRAPAPDALRRQFAHCQALCAALGLCVLADHHYEADDLIGSAL 126

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           + A  +GF   I+S DKDL QL+      +D  + ++     V  ++G+  +++    AL
Sbjct: 127 HRARGDGFHGVIVSADKDLSQLLLECDEQWDYGRGQRWGAAGVKARYGVHAQQIADYLAL 186

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAET 239
           +GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     +   + R        + E  + 
Sbjct: 187 SGDAIDNIPGVTGIGTKSAAILLAHFGDLDTLLARVDEVAFLRLRGAAQMAVRLREQRQH 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           A L R+L  +  D P+            +   L+   + L F  L  R
Sbjct: 247 ALLWRQLTTIALDAPLHTATPQFTRGTADTDILLGLCETLRFGPLTRR 294


>gi|315656745|ref|ZP_07909632.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492700|gb|EFU82304.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 637

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 163/314 (51%), Gaps = 13/314 (4%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAF++  P   R   G+  NA+ GF +ML  +++  +     +H    F
Sbjct: 6   LLVLDGHSLAFRAFFSRDPEHFRTSTGVYTNAVHGFFSMLLTMIRAEK----PTHIGAAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR +IYPDYK  R + P   + Q+  ++    A GI  +     EADDI+AT  
Sbjct: 62  DLSRHSFRTDIYPDYKGGRAETPPEFIGQVENIQKMLSAMGIKWLTEPNVEADDILATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYD--TVKEEKIDIEHVIK-KWGIPPEKMVC 181
               K G  V + S D+D  QL+S   T LY   ++ E K     V+K ++ + P++   
Sbjct: 122 TKGTKSGMEVLVSSGDRDSFQLISDDVTVLYPGRSISETKRMTPQVVKDRYDVWPQQYPE 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL G+  DN+PG+P +G K AA  + EYG+L+++L +   +K  KR EN+ ++ +   
Sbjct: 182 IAALVGEHADNLPGVPLVGEKVAASWINEYGSLDSLLEHRDELK-GKRGENLRQHIDDVL 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTYDCDAAN 298
            +R+L  LRTD+ + + LE L     +   +      LEF ++   I R+   +   + N
Sbjct: 241 RNRQLNRLRTDLQLPLSLEDLHWTGFDPQAIQEICDELEFKQMRTQILRLGQAFAVTSIN 300

Query: 299 IEPVVLDINTTENK 312
            +   ++++ T+ +
Sbjct: 301 GDSATMELDRTQTE 314



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 25/202 (12%)

Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K  ++ K  +  LH +G  + G   DI ++ Y+++   +    A + ++ L +   E   
Sbjct: 411 KTVYDAKSLRHALHAHGWELHGAVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDE--- 467

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLW------------LLLRPKLIVEKLLHVY 569
             K S  I KIS+    +  +E + N   Q W             LL+ +  +E+L H  
Sbjct: 468 --KPS-DISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIYAYALLQMQPTLEQLAHFR 524

Query: 570 E-----RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +      L+ P+  ++ +ME TGI ID   L + +  +   +   +++ +D  G + NLS
Sbjct: 525 QVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLS 584

Query: 625 SPKQLGDILFTKLKFPSGAKTK 646
           SPKQL ++LFT+L+ P   K K
Sbjct: 585 SPKQLQEVLFTQLELPKTKKPK 606


>gi|42565846|ref|NP_190773.2| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|145362483|ref|NP_974414.2| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|109946597|gb|ABG48477.1| At3g52050 [Arabidopsis thaliana]
 gi|332645358|gb|AEE78879.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
 gi|332645359|gb|AEE78880.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 425

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 160/311 (51%), Gaps = 42/311 (13%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK-------ESI 57
             + L+DG+S IYRA+Y   LL+R + G   +A     N  W L   S         + +
Sbjct: 94  GRVMLIDGTSIIYRAYYK--LLARLNHGHLAHADG---NADWVLTIFSSLSLLIDVLKFL 148

Query: 58  ASHFAVIFDYPAV------------------TFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
            SH AV+FD+  V                   FR+ +YP YK+NRP  P+ ++  L  ++
Sbjct: 149 PSHVAVVFDHDGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLK 208

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
            + +A  I  IE+ G EADD+I T    +   GF V ++S DKD  Q++SP+  L     
Sbjct: 209 ASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTP 268

Query: 160 E----EKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
                    +E   KK+G + P + V + AL GD  DNIPG+ GIG   A  L+  +G L
Sbjct: 269 RGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTL 328

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLEHLIL-----EDCN 268
           EN+L +   IK+ K +E+++  A+ A LS+KL +LR+D+P   +P +   L     ED N
Sbjct: 329 ENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPED-N 387

Query: 269 GPRLISFLKAL 279
           G +L S L A+
Sbjct: 388 GEKLSSLLIAI 398


>gi|242373751|ref|ZP_04819325.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W1]
 gi|242348488|gb|EES40090.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W1]
          Length = 292

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 146/264 (55%), Gaps = 23/264 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           E  + LVDG + ++R FYAT L ++      G+P N + GF   ++  +    KE   +H
Sbjct: 2   EQRVLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGVQGFVRHIFSAI----KEINPTH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV +D    TFRNE++  YK NRP  P  L+PQ   V+  +Q FG   + +  +EADD+
Sbjct: 58  VAVCWDMGQQTFRNEMFEGYKQNRPAPPAELIPQFDYVKEISQQFGFVNVGVSNYEADDV 117

Query: 121 IATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGI 174
           I +   +A++  E   V II+ D+D++Q ++    ++ T K   I   + + +    +G+
Sbjct: 118 IGS---LAKEYSEHNNVYIITGDRDILQCINDNVEVWLTKKGFTIYNRYTLNRFREEYGL 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI---KQKKRRE 231
            P++++ ++A  GD+ D  PG+ GIG KTA  L+Q +  +EN++ N S +   +QKK  +
Sbjct: 175 EPKQLIDVKAFMGDTADGYPGVKGIGEKTAIKLIQNHHTVENVIENISTLTPAQQKKIND 234

Query: 232 NILEYAETARLSRKLVMLRTDVPI 255
           NI    +   LS+ L  + T VPI
Sbjct: 235 NI----DNLHLSKSLAEIHTQVPI 254


>gi|298528005|ref|ZP_07015409.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511657|gb|EFI35559.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 914

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 193/393 (49%), Gaps = 49/393 (12%)

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK-QLGDIL 633
           P+   +S+ME  GI+ID++ L+   A +   +  L++ I+   G K NLSS    L  +L
Sbjct: 498 PLAPKISEMEYQGIRIDREKLEDFIARVDAKIPELKDRIFSSIGRKINLSSSSGDLKRVL 557

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           F + ++     TKTG + T    +E +    ++  I+++L  R++ K++ TY       I
Sbjct: 558 FKEKRYEPVKYTKTGDFSTDKNSMEVLYEKNEDEFIRDLLILRRVEKVRETY------FI 611

Query: 693 NKRTQ-----RVHTFYSLASTMTGRLASLEPNLQNIPI---KTDLGQKIRRAFISPPTKK 744
           N R +     R+H   +   T T RL S    LQN P    + DL  K   +   P +++
Sbjct: 612 NWRGEIEYDGRLHFSLNQHGTATYRL-SANKGLQNAPAYLKEIDLNVK---SLFLPDSEE 667

Query: 745 --LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP------- 795
             +   D +  ELR+L   +K   L + F   LDIH + AA+I     E++         
Sbjct: 668 YDIFDLDIANAELRVLCGYSKDETLIEAFNQGLDIHSLTAAKISDFTYEEIKAAKEDKTS 727

Query: 796 ---QMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHEYI 846
              ++R+  K INF  +Y +    L+ QL      ++   EA  Y+ ++F  +P + EY+
Sbjct: 728 EQHKLRQLGKKINFGTVYSMGATSLSKQLWAESRIKVSEDEAKQYLNKFFEEYPKVKEYM 787

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE----RAAINAPIQGSAADITRR 902
           EKT+ F R + +V T  GRR  +     P   + N  +    R AIN  IQ ++ADI   
Sbjct: 788 EKTRAFARAHRFVYTYTGRRRRF-----PMLGVDNHQKFKAFRQAINCRIQTTSADIVNT 842

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            ++ +  +++   L  ++LL +HD ++F++P++
Sbjct: 843 NLVDLDDAIK--PLGGRVLLTVHDSILFQLPKD 873


>gi|145332809|ref|NP_001078270.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|332645360|gb|AEE78881.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 448

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 160/311 (51%), Gaps = 42/311 (13%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK-------ESI 57
             + L+DG+S IYRA+Y   LL+R + G   +A     N  W L   S         + +
Sbjct: 117 GRVMLIDGTSIIYRAYYK--LLARLNHGHLAHADG---NADWVLTIFSSLSLLIDVLKFL 171

Query: 58  ASHFAVIFDYPAV------------------TFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
            SH AV+FD+  V                   FR+ +YP YK+NRP  P+ ++  L  ++
Sbjct: 172 PSHVAVVFDHDGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLK 231

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
            + +A  I  IE+ G EADD+I T    +   GF V ++S DKD  Q++SP+  L     
Sbjct: 232 ASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTP 291

Query: 160 E----EKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
                    +E   KK+G + P + V + AL GD  DNIPG+ GIG   A  L+  +G L
Sbjct: 292 RGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTL 351

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLEHLIL-----EDCN 268
           EN+L +   IK+ K +E+++  A+ A LS+KL +LR+D+P   +P +   L     ED N
Sbjct: 352 ENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPED-N 410

Query: 269 GPRLISFLKAL 279
           G +L S L A+
Sbjct: 411 GEKLSSLLIAI 421


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 142/544 (26%), Positives = 248/544 (45%), Gaps = 72/544 (13%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-KS 523
           +GHN+KYD   L+RYGI      D M+ S +L      H +  +A  +L     E+L KS
Sbjct: 73  VGHNLKYDLKFLYRYGIEPYAVFDTMIASQLLGE-LDRHSLQKVAMHYLG----EVLDKS 127

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK--------- 574
            + S     +   +  E+A  +  ++  L+ +L  KL      H  E L K         
Sbjct: 128 LQMSNWGRAVLSKEQLEYAALDVKMVRDLYSILLDKL--NSTAHQEETLLKTRTSRVFGL 185

Query: 575 ---------PMIDVVSQMEITGIQID----QDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                      +  V+++E+ GI +D    +DL+++    ++K ++        +   + 
Sbjct: 186 KNPVAIIEMAFVQEVAKLELNGIGVDIKELEDLIREYKKNLNKKVMEF------MMHYRI 239

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           +  SPKQLG++L  +L      KT+ G   T  + L Q      P+ + ILE R   K+ 
Sbjct: 240 DPLSPKQLGELLSKRLGLDL-PKTEKGNISTDDKILSQF-IHHKPV-QMILEIRMTKKLL 296

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
               D + + +   +  V+  +     +TGR++SL PN+QNIP      + +R  F +  
Sbjct: 297 DK-LDEIRSFVKDGS--VYPEFKQIGAITGRMSSLNPNVQNIP------RDLRGVFKARE 347

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            K L+ +D+SQIELRI +       + + F    D+HR  A+ + G   E +S + R+ A
Sbjct: 348 GKVLVISDFSQIELRIASEYVGDERMIKAFREGKDLHRYTASVLLGKKEEDISKEERQLA 407

Query: 802 KTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ- 855
           K +NF +IYGIS   L+   +     +   +A     R+F  F    E+ E+ K  ++Q 
Sbjct: 408 KAVNFGLIYGISARGLSDYAKSYGIDLSVDDAQKIRDRFFEYFRSFKEWHERVKRELKQL 467

Query: 856 ---NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
               GY  T+ GR   Y     P           A+N PIQG+ AD+ + +++     ++
Sbjct: 468 GGSRGY--TLLGR--SYVAHTFPD----------AVNYPIQGTGADLLKLSVLMFDAEIK 513

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             K+   ++  +HDE+V E   E+      ++  +M+ A    +  +VP++V   ++  W
Sbjct: 514 REKIEAHVVNLVHDEIVVECQMEKAQLVRDLLERAMKHAGRVVLK-QVPVEVESTINERW 572

Query: 973 QEEN 976
            +E 
Sbjct: 573 LKEG 576


>gi|156377033|ref|XP_001630662.1| predicted protein [Nematostella vectensis]
 gi|156217687|gb|EDO38599.1| predicted protein [Nematostella vectensis]
          Length = 425

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 202/449 (44%), Gaps = 76/449 (16%)

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
           K +    GI++ G  ED  + S++LD G     +  +  ++ S ++  IL+     +P  
Sbjct: 2   KALCQGCGITVSGECEDPKVASWLLDPGCKEKTLQHLVGQYAS-SKMVILEG---EVPCG 57

Query: 532 KISDSQV---------QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
            ++ S           +  A   S ++  +   LR  L+ + L + +++++ P++  + +
Sbjct: 58  SLTGSLALASQNTLSGRVRACTESVLVFSMMKKLRLDLVEDGLDYAFQKVEMPVMQCLVR 117

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME+ G    +    ++ A +   L +LE+  Y L+   F+L+SP  +   +  +LK    
Sbjct: 118 MELNGFGFSEAECDRLKAILQAKLRTLEQEAYRLANHSFSLTSPDDVAREVLERLK---- 173

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ----LSKIKSTYADSLPNHINKRTQR 698
                                 +P+ + ILEWR+    L+K+          H +    R
Sbjct: 174 --------------------SLHPLPRIILEWRRVNCALTKVVFPVQREKLFHKSLHMSR 213

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTD------------LGQK-------------- 732
           ++   S   T TGR++  EPNLQN+P   +            LG +              
Sbjct: 214 IYP-TSQTHTTTGRVSFNEPNLQNVPRDFEIELPSVIAESPPLGTRRRENIQKPARSDHS 272

Query: 733 -------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
                  +R AF+      L++ADYSQ+ELR++AH+A  + L +V     D+ RM+A  +
Sbjct: 273 GMSCAVSMRTAFVPCAGGVLLAADYSQLELRLIAHLADDSRLRKVLNGGGDVFRMIAGSL 332

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
            G+    V  + R+ AK I + IIYGI    L  QL +   +A+ YI+++  RF GI  Y
Sbjct: 333 AGLEPGSVDDKQRQRAKQICYGIIYGIGAKALGEQLELGEEDASMYIEKFKSRFSGIRRY 392

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           ++ T    R+ GYV TI  RR +   +NS
Sbjct: 393 LKSTVEQCRKTGYVTTITKRRRYLPAVNS 421


>gi|3063700|emb|CAA18591.1| putative protein [Arabidopsis thaliana]
 gi|7270174|emb|CAB79987.1| putative protein [Arabidopsis thaliana]
          Length = 1548

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 205/438 (46%), Gaps = 60/438 (13%)

Query: 560  LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
            L+ E+LL     ++ P+++V++ ME+ GI ID +   +    +   L SLE+  ++L+G 
Sbjct: 1115 LVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKAFELAGM 1174

Query: 620  KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
             F+L +P  + ++LF +LK P       G+   +               K+ L+  + S+
Sbjct: 1175 TFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTD-------------KHCLDLLRYSE 1221

Query: 680  IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
                +          +  R+    S AS        L+ N +++    D  +   R F  
Sbjct: 1222 WLIAFPYIAFCFFIIKDNRLFELLS-ASVEHEVEFKLDKNGRDVSSDADRYKINARDFFV 1280

Query: 740  PPTKK--LISADYSQIELRILAHIAKITPLY-QVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            P  +   L++ADYSQIELR++AH ++ + L  ++ +   D+  M+AA+  G   + VSP 
Sbjct: 1281 PTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPH 1340

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
             R   K + + I+YG+   RLA QL     EA + I+ +   FP +  ++ +T +F ++ 
Sbjct: 1341 DRDQTKRLIYGILYGMGANRLAEQLECTSDEAKEKIRSFKSSFPAVTSWLNETISFCQEK 1400

Query: 857  G--------------------------YVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            G                          Y++T+ GRR    +I    +  ++  +R A+N+
Sbjct: 1401 GWGCYRLFPLLFVLNAVLCVPLNHIFIYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNS 1460

Query: 891  PIQGSAADITRRAMISVHKSLED---------------HKLA--TKMLLQIHDELVFEVP 933
              QGSAADI + AMI+++ ++ +               H L    ++LLQ+HDELV EV 
Sbjct: 1461 MCQGSAADIIKIAMINIYSAIAEDVDTAASSSSSETRFHMLKGRCRILLQVHDELVLEVD 1520

Query: 934  EEEITTASQIIVHSMEKA 951
               +  A+ ++  SME A
Sbjct: 1521 PSYVKLAAMLLQTSMENA 1538


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 143/535 (26%), Positives = 251/535 (46%), Gaps = 61/535 (11%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           IGHN+K+D   L  Y I      D M+ S++L  G   H +  +    L YT  +  +  
Sbjct: 71  IGHNLKFDLHYLMNYQIEPLATFDTMIASFLL--GYERHSLNHLVGNLLGYTLDKSYQLS 128

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-----------------IVEKLLH 567
               P+  +SD+Q++ +A ++ +V+ +L+  LR  L                  +  L  
Sbjct: 129 DWGAPV--LSDAQLK-YAAKDVDVLRELFPKLRDMLNELEGERGEELLKTRTARIFGLKS 185

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS-KNLLSLEENIYDLSGEKFNLSSP 626
               ++   +  V+++E  G+ +D + L+    +I  K    ++E +     + F   SP
Sbjct: 186 PVAIVEMAFVKEVAKLERNGLPVDIETLESTLKDIERKTQKKVQEFLIKFRVDPF---SP 242

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQ+G +L +K K  +  +T+ G   T  + L   +      ++ +LE R+L K+   + +
Sbjct: 243 KQVGQLLTSKYKL-NLPRTQKGNVSTDDKVLS--SYAHVEPVRLLLEIRKLKKLSDKFKE 299

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
              N    +  R++  +     +TGR++SL+PN+QN+P      ++ R  F +P     +
Sbjct: 300 IKENL---KGDRLYPEFKQIGAVTGRMSSLKPNVQNVP------REERAIFKAPEGNTFV 350

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            AD+SQIELRI A       + + F    D+HR  A+ + G   E+++ + R+ AK INF
Sbjct: 351 IADFSQIELRIAAEYVNEELMIRAFREGKDLHRYTASLVLGKREEEITKEERQLAKAINF 410

Query: 807 SIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV- 859
            +IYGIS   LA   R      I   EA  +  R+F  F     + EK K  +++ G   
Sbjct: 411 GLIYGISAKGLAEYARTGYGVEISEEEAETFRNRFFKNFKAFKLWHEKVKKELKEKGVFR 470

Query: 860 -ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
             T+ GRR      N             A+N PIQG+ AD+ + A++      +  KL  
Sbjct: 471 GRTLLGRRFTATTFND------------AVNYPIQGTGADLLKLAVLLFDAEAKKKKLDA 518

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL-RVPLKVNIKVSNNW 972
           K++  +HDE+V E  +E      +++  +M++A   KI L +VP++V   ++  W
Sbjct: 519 KLVNLVHDEIVVECRKEVANQVKEVLEKAMKQAG--KIILKKVPVEVESVINERW 571


>gi|304389499|ref|ZP_07371462.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327309|gb|EFL94544.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 637

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 162/314 (51%), Gaps = 13/314 (4%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAF++  P   R   G+  NA+ GF +ML  +++  +     +H    F
Sbjct: 6   LLVLDGHSLAFRAFFSRDPEHFRTSTGVYTNAVHGFFSMLLTMIRAEK----PTHIGAAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR +IYPDYK  R + P   + Q+  ++    A GI  +     EADDI+AT  
Sbjct: 62  DLSRHSFRTDIYPDYKGGRAETPPEFIGQVENIQKMLSAMGIKWLTEPNVEADDILATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYD--TVKEEKIDIEHVIK-KWGIPPEKMVC 181
               K G  V + S D+D  QL+S   T LY   ++ E K      +K ++ + P++   
Sbjct: 122 TKGTKSGMEVLVSSGDRDSFQLISDDVTVLYPGRSISETKRMTPQAVKDRYDVWPQQYPE 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL G+  DN+PG+P +G K AA  + EYG+L+++L +   +K  KR EN+ ++ +   
Sbjct: 182 IAALVGEHADNLPGVPLVGEKVAASWINEYGSLDSLLEHRDELK-GKRGENLRQHIDDVL 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTYDCDAAN 298
            +R+L  LRTD+ + + LE L     +   +      LEF ++   I R+   +   + N
Sbjct: 241 RNRQLNRLRTDLQLPLSLEDLHWTGFDPQAIQEICDELEFKQMRTQILRLGQAFGVTSIN 300

Query: 299 IEPVVLDINTTENK 312
            +   ++++ T+ +
Sbjct: 301 GDSATMELDRTQTE 314



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 25/202 (12%)

Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K  ++ K  +  LH +G  + G   DI ++ Y+++   +    A + ++ L +   E   
Sbjct: 411 KTVYDAKSLRHALHAHGWELHGAVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDE--- 467

Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLW------------LLLRPKLIVEKLLHVY 569
             K S  I KIS+    +  +E + N   Q W             LL+ +  +E+L H  
Sbjct: 468 --KPS-DISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIYAYALLQMQPTLEQLAHFR 524

Query: 570 E-----RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +      L+ P+  ++ +ME TGI ID   L + +  +   +   +++ +D  G + NLS
Sbjct: 525 QVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLS 584

Query: 625 SPKQLGDILFTKLKFPSGAKTK 646
           SPKQL ++LFT+L+ P   K K
Sbjct: 585 SPKQLQEVLFTQLELPKTKKPK 606


>gi|254785283|ref|YP_003072711.1| 5'-3' exonuclease [Teredinibacter turnerae T7901]
 gi|237683935|gb|ACR11199.1| 5'-3' exonuclease [Teredinibacter turnerae T7901]
          Length = 301

 Score =  145 bits (365), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 93/263 (35%), Positives = 142/263 (53%), Gaps = 16/263 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATP--LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + + ++L+D S +I+R +++ P     R+H   P  A+ G+   L + L+  R + IA  
Sbjct: 5   QSDTVYLIDASIYIFRYYFSLPDNWWGREHQ--PTAAVYGYGRWLLRFLKAVRPKYIA-- 60

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
               FD    + FRNE+YP YKA+R    E L  QL   +  + A+G+       FEADD
Sbjct: 61  --CCFDESLTSCFRNELYPGYKASRALPDESLAFQLAACKGLSAAYGLATYASPRFEADD 118

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           +IAT    + K G +V ++S DKDL Q++ +    L+D    E +D + +  K+GI PE+
Sbjct: 119 LIATLAAKSRKRGLSVCVVSRDKDLSQIIRTARDTLWDFPDREPLDSDAIFAKYGIYPEQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-----IKQKKRRENI 233
           M    AL GD  D+IPG+ GIG KTAA LL E+G+   I  N +R     I+   +  + 
Sbjct: 179 MADFLALVGDPSDDIPGVAGIGGKTAAALLAEFGSWREIRRNYNRVAKCAIRGAAKLGDK 238

Query: 234 LEYAETA-RLSRKLVMLRTDVPI 255
           L  AE    LSR+L  + +D P+
Sbjct: 239 LAAAEAQIELSRQLARVASDAPL 261


>gi|325929428|ref|ZP_08190556.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas perforans 91-118]
 gi|325540203|gb|EGD11817.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas perforans 91-118]
          Length = 328

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 145/309 (46%), Gaps = 9/309 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +++   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    + I   
Sbjct: 15  IRRPTPLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPQHITIA 74

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F    D     FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+
Sbjct: 75  FDEALD---SCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +  + A   G    I+S DKDL QL+      +D  + ++  I+ V  + G+   ++ 
Sbjct: 132 IGSALHSARAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGIDGVKARHGVHAHQIA 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NIL 234
              AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + 
Sbjct: 192 DYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLR 251

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  E A L R+L  +  D P+ +          +   L    ++L F  L  R       
Sbjct: 252 EQREHALLWRQLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGPLTRRRLLAAST 311

Query: 295 DAANIEPVV 303
            AA   P V
Sbjct: 312 GAAAPFPPV 320


>gi|325922731|ref|ZP_08184469.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas gardneri ATCC 19865]
 gi|325546798|gb|EGD17914.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas gardneri ATCC 19865]
          Length = 328

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 139/287 (48%), Gaps = 9/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+      I   F    D
Sbjct: 21  LYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPAHITIAFDEALD 80

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ +YP YK NR   P+ L  Q    +    A G+  +  + +EADD+I +  +
Sbjct: 81  ---SCFRHALYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLIGSALH 137

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G    I+S DKDL QL+      +D  + ++ D+  V  ++G+   ++    AL 
Sbjct: 138 SARAQGLRGVIVSADKDLSQLLVEHDEQWDYARNQRWDMHGVKARYGVHAHQIADYLALC 197

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAETA 240
           GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     +   + R        + E  E A
Sbjct: 198 GDAIDNIPGVTGIGAKSAAILLAHFGSLDALLERVDELPFLRLRGAAQMAVRLREQREHA 257

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            L R+L  +  + P+ +          +   L    ++L F  L  R
Sbjct: 258 LLWRQLSTIALNAPLALTATGFTRAQADADMLTGLCESLRFGPLTRR 304


>gi|322786085|gb|EFZ12696.1| hypothetical protein SINV_15346 [Solenopsis invicta]
          Length = 1172

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 156/321 (48%), Gaps = 59/321 (18%)

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            LL+ +  ++  ++  ++ ME++GI ++   L+++SA IS  + SLE   Y+L+G KFN S
Sbjct: 904  LLYTFREVEMRIVTTLACMELSGIGVNLKSLQELSAVISDEMQSLETKAYNLAGRKFNFS 963

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            S K++G +++  LK         G            NC                      
Sbjct: 964  SSKEVGQMIYPLLKLAQNDSRIRG------------NC---------------------- 989

Query: 685  ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-----IKTDLGQKIRRAFIS 739
                                +  T+TGR++  EPNLQN+P        +L   +R AF+ 
Sbjct: 990  --------------------ITCTVTGRVSMHEPNLQNVPKDFNFADNNLVISVRMAFVP 1029

Query: 740  PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                 ++SADY Q+ELR+L H ++ + L ++ +   DI + +AA+   V  E+V+ +MR+
Sbjct: 1030 ALGNIMLSADYCQLELRLLTHFSQDSVLCKIMKQPGDIFKNIAAKWNNVTEEQVNNEMRQ 1089

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
              K + + +IYG+    LA  L +   EA ++++ +   +PGI++++        ++GYV
Sbjct: 1090 RTKQLCYGMIYGMGVKSLAENLCVSEPEAQEFLESFMGAYPGIYKWLNDVLEEAHRDGYV 1149

Query: 860  ETIFGRRIHYDEINSPKSSIR 880
             T+ GRR    ++ S KSS R
Sbjct: 1150 ATLLGRRRQLPDLKSTKSSTR 1170


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 130/524 (24%), Positives = 228/524 (43%), Gaps = 57/524 (10%)

Query: 465  IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR--SSHDIASIAQKWLSYTRKEILK 522
            +G N+ +D   L R G       D ML S VL +G   + H +  +A + L     + L+
Sbjct: 970  VGQNLGFDLPFLMRLGFVPGRVRDTMLASQVLHAGNRTTGHSLKDLAHRHLGLELDKGLQ 1029

Query: 523  SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
            +   S P+   +D+ +  +A  ++ + L LW  L P+L    L    E  +   +  V+ 
Sbjct: 1030 TADWSGPL---TDAHLG-YAARDAELPLALWERLAPELAAAHLTGTAE-AEMAALPAVAW 1084

Query: 583  MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL---SGEKFNLSSPKQLGDILFTKLKF 639
                G+  D+     V+A+         E++ +L   +G  F +++   + D +      
Sbjct: 1085 AARHGVGFDRPAWDAVAADTEACAARAREHLDELLPNAGNLFGVTNWNSV-DEVTAAFAA 1143

Query: 640  PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               A T TG         + +    +P    + E R  SK+  TY      H+    +  
Sbjct: 1144 AGVALTSTGD--------DALAAVAHPAAALLREHRAASKLSGTYGRGWLRHVADDGRVY 1195

Query: 700  HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
              +  + +  +GR++  +PNLQ +P       + RR F++PP + L+ ADYSQIELRI A
Sbjct: 1196 AAWKQVGAGASGRMSCKDPNLQQLPRDP----RFRRCFVTPPGRVLVKADYSQIELRIAA 1251

Query: 760  HIAKITPLYQVFENSLDIHRMVAAEIFG-VNIEKVSPQMRRHAKTINFSIIYGI------ 812
             I     +   ++   D+H   A  + G  ++ K   Q+   +K++NF ++YG+      
Sbjct: 1252 KITGDKRMLDAYQKGEDLHTTTARAVLGKTDVTKADRQL---SKSLNFGLLYGMGAKALA 1308

Query: 813  ----SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
                S F +A    +   EAAD+   +F  +PG+  +  K  + + Q     T+ GRR  
Sbjct: 1309 AYAASNFGVA----LTEGEAADHRDAFFRTYPGLRAWHRKVPDGIIQ---TRTLAGRR-- 1359

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
                   +  +    E+  +N P+QG+ AD  +RA+  +         A  +LL +HDE+
Sbjct: 1360 -------RVGVGAFTEK--LNTPVQGTGADGLKRALALLWARRNSCPDAFPVLL-VHDEI 1409

Query: 929  VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            V E  EE    A   +  +M     P I+  VP++V +     W
Sbjct: 1410 VVECSEERRDEAIAWVRDAMRDGMAPLIDP-VPVEVEVSAGRTW 1452


>gi|205373733|ref|ZP_03226536.1| 5'-3' exonuclease, putative [Bacillus coahuilensis m4-4]
          Length = 247

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 135/248 (54%), Gaps = 36/248 (14%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           K+ H+ L+DG + ++R+F++T +  +      G+P N + GF  +   LL  S KE   +
Sbjct: 2   KDKHVLLIDGMALLFRSFFSTSVTGQFMINSSGIPTNGVQGF--LKHTLL--SIKEFNPT 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV +D  +VTFRN+++  YK+NR   P  LLPQ    + + +A G+  I + G+EADD
Sbjct: 58  HVAVCWDMGSVTFRNDMFDGYKSNRDAPPVELLPQFDFAKESAEALGLSNIGVVGYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------- 172
            I T      KE   V+I+S D DL+QLV           +E I++ H++KK        
Sbjct: 118 CIGTLAKGYSKE-VKVSILSGDHDLLQLV-----------DEHINV-HILKKGYGQYSTY 164

Query: 173 ---------GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
                    GI P + + ++A  GD+ D  PG+ GIG KTA  L+QEYG++E +L N   
Sbjct: 165 SKKAFIEEKGITPSQFIDVKAFMGDTSDGYPGVRGIGEKTATKLIQEYGSIEGVLNNLHL 224

Query: 224 IKQKKRRE 231
           +   ++R+
Sbjct: 225 LTNAQQRK 232


>gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 940

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 145/302 (48%), Gaps = 26/302 (8%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+H   +L +T TGRL   +PNLQN P   +    IR+AF + P   LI  DYSQ+ELRI
Sbjct: 637 RIHPSLALDTT-TGRLCCRKPNLQNPPSAHNDLYSIRKAFSARPGNTLIVGDYSQLELRI 695

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---------------PQM----- 797
           LAH+++   + +      DIH   A ++F    E V+               P +     
Sbjct: 696 LAHMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAVANGSVVIDDAEAHPGIPSVKTKFS 755

Query: 798 --RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R+ AK +NFSI YG +   LA ++ +P ++  D   R+ +   G+  +  +     R 
Sbjct: 756 TQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDMFTRWNNSKKGVERWKAEIIQQARD 815

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
             +  ++ GR   +  I          +ERAA+N  IQGSAADI   AM+ V +     +
Sbjct: 816 TQHATSVLGRHRRFPHIKHRLRKYSGRSERAAVNFVIQGSAADIAMMAMLRVDRDERLRR 875

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL---PKINLRVPLKVNIKVSNNW 972
           +  K+++Q+HDE++ E P E  T A  I+   ME       P   + + L V+I    NW
Sbjct: 876 MGFKIVMQVHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNW 935

Query: 973 QE 974
            +
Sbjct: 936 SD 937



 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502
           ++ +L   + +FEN    KI HN   D  VL+ +GI++RG E D   ++ + DS  SS
Sbjct: 197 SRHVLDLFRSYFENPAKRKIFHNFAADAHVLYGHGITVRGLEADTRYLARLFDSSLSS 254


>gi|222871907|gb|EEF09038.1| predicted protein [Populus trichocarpa]
          Length = 161

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 69/163 (42%), Positives = 100/163 (61%), Gaps = 4/163 (2%)

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +S F LA+ L I R  A  YI RYF R+PG+  Y+E+T+   R+ GYVET+FGRR+   +
Sbjct: 1   MSAFGLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWLPD 60

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           IN      R   ERAAINAP+QG+AAD+ + +MI+V   LE  +L T+ ++Q+HDELV E
Sbjct: 61  INGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQDWLEGERLGTRQIMQVHDELVLE 120

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           VP+ E+    +++   + +       L VPL   +    NW+E
Sbjct: 121 VPQAEL----ELVRVKLPELMCAVATLNVPLVAEVGSGANWEE 159


>gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 361

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 142/276 (51%), Gaps = 40/276 (14%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR  F       +++ADYSQ+ELR+LAH+AK   L  +  +  D+ + +AA+   V+++ 
Sbjct: 82  IRNVFCPFKGGLMLAADYSQLELRLLAHLAKDRCLMSILNSGSDVFKQIAAKWKHVDVDS 141

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           V+ + R+ AK + + +IYGI    L  QL +   +AA +++ +  ++ G+  Y+ +    
Sbjct: 142 VTAEQRQQAKQMCYGMIYGIGARALGEQLGVCEEDAAAFMESFKSQYKGMKNYLLEVVKQ 201

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
            R+ GYV+T+ GRR +   I+      RN  ER A+N  +QGSAAD+ + AM+ + + L 
Sbjct: 202 CREKGYVQTLTGRRRYLPAIHHTNPGARNQAERQAVNTTVQGSAADLVKTAMVKIDRRLA 261

Query: 913 DHKLATK------------------------------------MLLQIHDELVFEVPEEE 936
               ATK                                    ++LQ+HDEL++EV  E+
Sbjct: 262 VEYPATKRSHKHKEEEESGTAPGRRKSRRLQTSTTGFTPPGAFLVLQLHDELIYEVRRED 321

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +   +Q+I   ME A   K+++R+P+KV  K    W
Sbjct: 322 VDQVAQLIKTEMENAM--KLSVRLPVKV--KFGPTW 353


>gi|188524383|ref|ZP_03004410.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195659992|gb|EDX53372.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
          Length = 289

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 157/286 (54%), Gaps = 13/286 (4%)

Query: 9   LVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           ++DG+S IYRAF+AT      + ++  +P NAI    +M++K+L     E   S+  +  
Sbjct: 6   VIDGNSLIYRAFHATYKQAEWAVENQLMPTNAIKLVASMIFKILN----EDQFSYALIAL 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + Y  YKA R  + E L+ QLP ++    A G   I   G EADD + +++
Sbjct: 62  DASKKTFRAQEYAAYKATRKPMDEKLVVQLPYIKKLFTAMGFHIISQPGIEADDFVGSFS 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEH-VIKKWGIPPEKMV 180
            +  K      I STD+D++QL++P T L      T   ++I++ +  +   G+ P++++
Sbjct: 122 NLMSKSNIDTIIYSTDRDMLQLINPNTKLKLLKTGTSIVQEINLANFALLNNGLLPKQII 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             + L GDS DN+ G+ GIG KTA  L+ +Y NLENI  N   I    + + ++E+ + A
Sbjct: 182 DYKGLVGDSSDNLVGVKGIGPKTAINLILKYTNLENIYANLEEITPSVKNK-LIEHEKMA 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            LS+K+  ++TD+ +   LE+ IL+  N   L +  ++LE   + N
Sbjct: 241 FLSKKIATIQTDLLLDETLENFILKPYNIQELDTLFESLEINNMHN 286


>gi|325914281|ref|ZP_08176631.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325539536|gb|EGD11182.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 328

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 142/301 (47%), Gaps = 10/301 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+D S +++RA+++ P   +   G P NA+ GF   L  LL+  R + I   F    D
Sbjct: 21  LYLIDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLERERPQHITIAFDEALD 80

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I +  +
Sbjct: 81  ---SCFRHAIYPAYKGNREPAPDALRRQFAHCKALCAALGLSVLAHREYEADDLIGSALH 137

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
                G    I+S DKDL QL+      +D  +  +  ++ V  + G+   ++    AL 
Sbjct: 138 SMRAHGMRGVIVSADKDLSQLLFDHDEQWDYARNLRWGMDGVKARHGVHAHQIADYLALC 197

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAETA 240
           GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + E  + A
Sbjct: 198 GDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLREQRDHA 257

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L R+L  +  D P+ +          +   LI    +L F  L  R      CD A + 
Sbjct: 258 LLWRQLTTIALDAPLGLTDAGFTRAQADADMLIGLCDSLRFGPLTRRRLLAV-CDGAALP 316

Query: 301 P 301
           P
Sbjct: 317 P 317


>gi|289663503|ref|ZP_06485084.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 328

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 136/287 (47%), Gaps = 9/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    + I   F    D
Sbjct: 21  LYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPQHITIAFDEALD 80

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I +  +
Sbjct: 81  ---SCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLIGSALH 137

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
                G    I+S DKDL QL+      +D  + ++ D+  V  + G+   ++    AL 
Sbjct: 138 SVRAHGVRGVIVSADKDLSQLLLEHDEQWDYARNQRWDMHGVKARHGVHAHQIADYLALC 197

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAETA 240
           GD+IDNIPG+ GIG K+AA+LL  +G+L  +L     I   + R        + E  E A
Sbjct: 198 GDAIDNIPGVTGIGAKSAAVLLAHFGSLNALLERIDEIPFLRLRGAAQMAVRLREQREHA 257

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            L R+L  +  D P+ +          +   L    ++L F  L  R
Sbjct: 258 LLWRQLTTIALDAPLALTDTGFTRAHADADMLTGLCESLRFGPLTRR 304


>gi|108706960|gb|ABF94755.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing
           protein, expressed [Oryza sativa Japonica Group]
          Length = 416

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 162/309 (52%), Gaps = 33/309 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLP-VNAIAGFCNMLWKLLQN--SRKESIASH 60
           ++ + LVDG+S +YR++Y   L   +H  L   +    +   ++K L       E I SH
Sbjct: 85  KSRIMLVDGTSVMYRSYYKI-LAQLQHGQLEHADGNGDWVLTIFKALSLVLDMLEFIPSH 143

Query: 61  FAVIFDYPAV-------------------TFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
            AV+FD+  V                   TFR+ +YP YK+NR   P+ ++  +  ++ +
Sbjct: 144 AAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPSYKSNRIPTPDTIVQGMQYLKAS 203

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
            +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L       
Sbjct: 204 IKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRIVSPDKDFFQILSPSLRLLRIAPRG 263

Query: 162 ----KIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
                  +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ ++G+LEN
Sbjct: 264 SGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITKFGSLEN 323

Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLE--HLILEDC--NGPR 271
           +L +   +++++ ++ ++  +E A L + L  LR+D+P   +P +   L+ +    +G +
Sbjct: 324 LLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSDLPSYMVPFKTSDLVFQKPKDDGAK 383

Query: 272 LISFLKALE 280
            I  L+ALE
Sbjct: 384 FIKLLRALE 392


>gi|294626134|ref|ZP_06704741.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665198|ref|ZP_06730497.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292599583|gb|EFF43713.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605021|gb|EFF48373.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 328

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 140/293 (47%), Gaps = 9/293 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +Q+   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    + I   
Sbjct: 15  IQRPTPLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPQHITIA 74

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F    D     FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+
Sbjct: 75  FDEALD---SCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +  +     G    I+S DKDL QL+      +D  + ++  ++ V  + G+   ++ 
Sbjct: 132 IGSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGMDGVKARHGVHAHQIA 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NIL 234
              AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + 
Sbjct: 192 DYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLR 251

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           E  E A L R+L  +  D P+ +          +   L    ++L F  L  R
Sbjct: 252 EQREHALLWRQLTTIALDAPLALTQTGFTRAHTDADMLTGLCESLRFGPLTRR 304


>gi|115451687|ref|NP_001049444.1| Os03g0227300 [Oryza sativa Japonica Group]
 gi|108706959|gb|ABF94754.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing
           protein, expressed [Oryza sativa Japonica Group]
 gi|113547915|dbj|BAF11358.1| Os03g0227300 [Oryza sativa Japonica Group]
 gi|215704203|dbj|BAG93043.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222624502|gb|EEE58634.1| hypothetical protein OsJ_10000 [Oryza sativa Japonica Group]
          Length = 421

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 163/313 (52%), Gaps = 41/313 (13%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKL-------LQNSRKES 56
           ++ + LVDG+S +YR++Y   +L++   G   +A     N  W L       L     E 
Sbjct: 90  KSRIMLVDGTSVMYRSYYK--ILAQLQHGQLEHADG---NGDWVLTIFKALSLVLDMLEF 144

Query: 57  IASHFAVIFDYPAV-------------------TFRNEIYPDYKANRPKIPEMLLPQLPL 97
           I SH AV+FD+  V                   TFR+ +YP YK+NR   P+ ++  +  
Sbjct: 145 IPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPSYKSNRIPTPDTIVQGMQY 204

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L   
Sbjct: 205 LKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRIVSPDKDFFQILSPSLRLLRI 264

Query: 158 VKEE----KIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                      +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ ++G
Sbjct: 265 APRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITKFG 324

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLE--HLILEDC-- 267
           +LEN+L +   +++++ ++ ++  +E A L + L  LR+D+P   +P +   L+ +    
Sbjct: 325 SLENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSDLPSYMVPFKTSDLVFQKPKD 384

Query: 268 NGPRLISFLKALE 280
           +G + I  L+ALE
Sbjct: 385 DGAKFIKLLRALE 397


>gi|85057346|ref|YP_456262.1| DNA polymerase I [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789451|gb|ABC65183.1| DNA polymerase I [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 847

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 132/232 (56%), Gaps = 21/232 (9%)

Query: 6   HLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           HL LVDG+S ++RA++AT     PLL  K  G+  NA+  F  M  K+L+ ++      +
Sbjct: 3   HLVLVDGNSLLFRAYHATASKYKPLLQNKK-GIYTNALLSFIRMFEKILEETK-----GY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD P  T R+++Y  YK  RP+ P  L+ Q+PL++   +  G+       +EADDI
Sbjct: 57  ILVAFDTPKTTKRHQLYDAYKQGRPETPSALISQIPLIKQYLELIGVKYHAQDEYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEH-----VIKKWG 173
           I T    A  +   V+I S+D DL+QLV    T CL   +K+   +I++     +++++G
Sbjct: 117 IGTLAKEASNQNNTVSIYSSDCDLLQLVDKKITVCL---LKKGLREIKYYTPTTLLEEYG 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           +   +M+  ++L GD  DNI G+ GIG KTA  LLQEY  L+N++ N   IK
Sbjct: 174 LKEYQMIDYKSLIGDPSDNIKGVLGIGPKTAQKLLQEYDTLDNLMQNLDNIK 225


>gi|218192373|gb|EEC74800.1| hypothetical protein OsI_10602 [Oryza sativa Indica Group]
          Length = 421

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 163/313 (52%), Gaps = 41/313 (13%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKL-------LQNSRKES 56
           ++ + LVDG+S +YR++Y   +L++   G   +A     N  W L       L     E 
Sbjct: 90  KSRIMLVDGTSVMYRSYYK--ILAQLQHGQLEHADG---NGDWVLTIFKALSLVLDMLEF 144

Query: 57  IASHFAVIFDYPAV-------------------TFRNEIYPDYKANRPKIPEMLLPQLPL 97
           I SH AV+FD+  V                   TFR+ +YP YK+NR   P+ ++  +  
Sbjct: 145 IPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPSYKSNRIPTPDTIVQGMQY 204

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L   
Sbjct: 205 LKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRIVSPDKDFFQILSPSLRLLRI 264

Query: 158 VKEE----KIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                      +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ ++G
Sbjct: 265 APRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITKFG 324

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLE--HLILEDC-- 267
           +LEN+L +   +++++ ++ ++  +E A L + L  LR+D+P   +P +   L+ +    
Sbjct: 325 SLENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSDLPSYMVPFKTSDLVFQKPKD 384

Query: 268 NGPRLISFLKALE 280
           +G + I  L+ALE
Sbjct: 385 DGTKFIKLLRALE 397


>gi|321311667|ref|YP_004203954.1| 5'3'-exonuclease [Bacillus subtilis BSn5]
 gi|320017941|gb|ADV92927.1| 5'3'-exonuclease [Bacillus subtilis BSn5]
          Length = 296

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 140/263 (53%), Gaps = 13/263 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N L LVDG + ++RAF+AT +         G+P N + GF   L   ++  +     +H 
Sbjct: 4   NKLLLVDGMALLFRAFFATAVHRNFMINDSGVPTNGVNGFLKHLITAVETFQ----PTHV 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + T+RN+++ DYKANR   PE L+PQ  L + A    GI  I   G+EADD I
Sbjct: 60  ICCWDMGSKTYRNDLFQDYKANRSAPPEELIPQFDLAKEAAAELGIMNIGFAGYEADDCI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDI-EHVIKKWGIPPE 177
            T   +   E   +T+++ D+DL+QL++       L   +   K+   E   ++ G+ P+
Sbjct: 120 GTLADLFANEA-DITVVTGDRDLLQLLTDKVSVALLQKGIGNYKVYTKETFYEETGVMPK 178

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            ++ ++AL GDS DN PG+ GIG KTA  L++EY  ++ +L N S +  K ++  I +  
Sbjct: 179 ALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLENLSLLP-KGQQGKIQQGL 237

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
               +SRKL  +   VP+   L+
Sbjct: 238 SDLEMSRKLAEIHCSVPLACTLK 260


>gi|225550719|ref|ZP_03771668.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
 gi|225379873|gb|EEH02235.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
          Length = 289

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 157/286 (54%), Gaps = 13/286 (4%)

Query: 9   LVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           ++DG+S IYRAF+AT      + ++  +P NAI    +M++K+L     E   S+  +  
Sbjct: 6   VIDGNSLIYRAFHATYKQAEWAVENQLMPTNAIKLVASMIFKILN----EDQFSYALIAL 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + Y  YKA R  + E L+ QLP ++    A G   I   G EADD + +++
Sbjct: 62  DASKKTFRAQEYAAYKATRKPMDEKLVVQLPYIKKLFTAMGFHIISQPGIEADDFVGSFS 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEH-VIKKWGIPPEKMV 180
            +  K      I STD+D++QL++P T L      T   ++I++ +  +   G+ P++++
Sbjct: 122 NLMSKSNIDTIIYSTDRDMLQLINPNTKLKLLKTGTSIVQEINLANFALLNNGLLPKQII 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             + L GDS DN+ G+ GIG KTA  L+ +Y NLENI  N   I    + + ++E+ + A
Sbjct: 182 DYKGLVGDSSDNLVGVKGIGPKTAINLILKYTNLENIYANLEEITPSVKNK-LIEHEKMA 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            LS+KL  ++TD+ +   LE+ IL+  N   L +  ++L+   + N
Sbjct: 241 FLSKKLATIQTDLLLDETLENFILKPYNIQELDTLFESLKINNMHN 286


>gi|21241682|ref|NP_641264.1| exodeoxyribonuclease IX [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107047|gb|AAM35800.1| exodeoxyribonuclease IX [Xanthomonas axonopodis pv. citri str. 306]
          Length = 328

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 140/293 (47%), Gaps = 9/293 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +Q+   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    + I   
Sbjct: 15  IQRPTPLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPQYITIA 74

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F    D     FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+
Sbjct: 75  FDEALD---SCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +  +     G    I+S DKDL QL+      +D  + ++  ++ V  + G+   ++ 
Sbjct: 132 IGSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGMDGVKARHGVHAHQIA 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NIL 234
              AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + 
Sbjct: 192 DYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLR 251

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           E  E A L R+L  +  D P+ +          +   L    ++L F  L  R
Sbjct: 252 EQREHALLWRQLTTIALDAPLALTQTGFTRAHADADMLTGLCESLRFGPLTRR 304


>gi|289670887|ref|ZP_06491962.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 328

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 140/293 (47%), Gaps = 9/293 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +Q+   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    + I   
Sbjct: 15  VQRPTPLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPQHITIA 74

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F    D     FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+
Sbjct: 75  FDEALD---SCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +  +     G    I+S DKDL QL+      +D  + ++  ++ V  + G+   ++ 
Sbjct: 132 IGSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGMDGVKARHGVHAHQIA 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NIL 234
              AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + 
Sbjct: 192 DYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLR 251

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           E  E A L R+L  +  D P+ +          +   L    ++L F  L  R
Sbjct: 252 EQREHALLWRQLTTIALDAPLALTDTGFTRAHADADMLTGLCESLRFGPLTRR 304


>gi|188992907|ref|YP_001904917.1| Exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734667|emb|CAP52877.1| Exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris]
          Length = 332

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+  R + I   F    D
Sbjct: 25  LYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLERERPQHITIAFDEALD 84

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I +  +
Sbjct: 85  ---SCFRHAIYPAYKGNREPAPDALRRQFAHCKALCAALGLSVLAHREYEADDLIGSALH 141

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I+S DKDL QL+      +D  +  +  ++ V  + G+   +M    AL 
Sbjct: 142 SARARGLRGIIVSADKDLSQLLFEHDEQWDYARNVRWGMDGVKARHGVHAHQMADYLALC 201

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAETA 240
           GD+IDNIPGI GIG K+AA+LL  +G+L+ +L     +   + R        + E  E A
Sbjct: 202 GDAIDNIPGITGIGAKSAAVLLAHFGSLDALLERLDELPFLRLRGAAQMALRLREQREHA 261

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            L R+L  +  D P+ +          +   L     +L F  L  R
Sbjct: 262 LLWRQLTTIALDAPLELTESGFTRAPADTDMLTGLCDSLRFGPLTRR 308


>gi|21230313|ref|NP_636230.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769693|ref|YP_244455.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21111863|gb|AAM40154.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575025|gb|AAY50435.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 332

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+  R + I   F    D
Sbjct: 25  LYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLERERPQHITIAFDEALD 84

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I +  +
Sbjct: 85  ---SCFRHAIYPAYKGNREPAPDALRRQFAHCKALCAALGLSVLAHREYEADDLIGSALH 141

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G    I+S DKDL QL+      +D  +  +  ++ V  + G+   +M    AL 
Sbjct: 142 SARARGLRGIIVSADKDLSQLLFEHDEQWDYARNVRWGMDGVKARHGVHAHQMADYLALC 201

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAETA 240
           GD+IDNIPGI GIG K+AA+LL  +G+L+ +L     +   + R        + E  E A
Sbjct: 202 GDAIDNIPGITGIGAKSAAVLLAHFGSLDALLERLDELPFLRLRGAAQMALRLREQREHA 261

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            L R+L  +  D P+ +          +   L     +L F  L  R
Sbjct: 262 LLWRQLTTIALDAPLELTESGFTRAPADTDMLTGLCDSLRFGPLTRR 308


>gi|32491005|ref|NP_871259.1| hypothetical protein WGLp256 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166211|dbj|BAC24402.1| polA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 289

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 11/283 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + L+DGS ++Y+A++  P + +   G  V AI G   M+ K L+      +A    +
Sbjct: 12  DKFVILIDGSIYLYKAYFGAPNI-KNISGKSVGAIYGIIKMIKKTLRLYSTNCVA----I 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    T RN+IY +YK+NR K+PE L  Q+P+++      G     I G E+DDII T
Sbjct: 67  VFDSHHNTSRNKIYKNYKSNRKKMPEDLKHQIPIIKNILSFMGFSIFCIDGIESDDIIGT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +   E++G  V I + DKD+MQLVS    + +    +  D+  V  K+ I P  +    
Sbjct: 127 MSIKLEQQGKKVFIFTNDKDMMQLVSSNVNIININNYKIYDVIEVYLKYKIFPCSIADYL 186

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR------IKQKKRRENILEYA 237
           AL GD  DNIPGIP IG KTA  LL ++ +L +I  N  +      IK KK   ++ +  
Sbjct: 187 ALVGDCSDNIPGIPRIGEKTAVKLLNKFPSLLDIYNNIRKVDKLTDIKSKKVIYSLKKNK 246

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
             A L  KL  + T++ I    + +I   C+  +L +  K ++
Sbjct: 247 RKAFLYYKLTKINTNIKINFSFKDIIRRSCDKEKLFNLFKTIK 289


>gi|78046504|ref|YP_362679.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78034934|emb|CAJ22579.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 328

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 144/309 (46%), Gaps = 9/309 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +++   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    + I   
Sbjct: 15  IRRPTPLYLVDASLYVFRAWHSIPDEFQDVQGWPTNAVHGFARFLLDLLEREDPQHITIA 74

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F    D     FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+
Sbjct: 75  FDEALD---SCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +  +     G    I+S DKDL QL+      +D  + ++  I+ V  + G+   ++ 
Sbjct: 132 IGSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGIDGVKARHGVHAHQIA 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NIL 234
              AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + 
Sbjct: 192 DYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLR 251

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  E A L R+L  +  D P+ +          +   L    ++L F  L  R       
Sbjct: 252 EQREHALLWRQLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGPLTRRRLLAAST 311

Query: 295 DAANIEPVV 303
            AA   P V
Sbjct: 312 GAAAPFPPV 320


>gi|260220820|emb|CBA28768.1| hypothetical protein Csp_A08790 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 430

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 40  GFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
           G   ++  ++ + RKE  A + A +FD    TFR+EIYP+YKA+R  +P+ L  Q+  + 
Sbjct: 51  GAVRIMINMMNSLRKEYPADYVACVFDAKGPTFRDEIYPEYKAHRDPMPDDLRSQIAPIH 110

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
              +  G   +++ G EADD+I T    A  +G  V + S DKDL QLV+    + DT+ 
Sbjct: 111 EIVRLLGWKVLDVPGVEADDVIGTLAATAASQGIEVIVSSGDKDLAQLVNEHITIIDTMN 170

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            ++ D+  V  ++G+P   M+  Q L GD++DN+PG+  +G KTA   LQ+YG+L+ ++ 
Sbjct: 171 GKRRDLAGVEAEFGVPARLMLDYQTLVGDTVDNVPGVAKVGPKTAVKWLQQYGSLQGVVD 230

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
           NA+ I      EN+ +  +     R L+ ++TD  +T  ++ L
Sbjct: 231 NAANIGGVV-GENLRKALDWLPTGRTLLTIKTDCDLTGWVDGL 272


>gi|171920902|ref|ZP_02932053.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|185178956|ref|ZP_02964713.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024062|ref|ZP_02996810.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518257|ref|ZP_03003785.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|195867843|ref|ZP_03079843.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198273766|ref|ZP_03206300.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|209554047|ref|YP_002284851.1| Exo [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225551170|ref|ZP_03772116.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|171903118|gb|EDT49407.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|184209232|gb|EDU06275.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188019099|gb|EDU57139.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188998225|gb|EDU67322.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|195660540|gb|EDX53797.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198249521|gb|EDY74303.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|209541548|gb|ACI59777.1| Exo [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225378985|gb|EEH01350.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
          Length = 289

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 157/286 (54%), Gaps = 13/286 (4%)

Query: 9   LVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           ++DG+S IYRAF+AT      + ++  +P NAI    +M++K+L     E   S+  +  
Sbjct: 6   VIDGNSLIYRAFHATYKQAEWAVENQLMPTNAIKLVASMIFKILN----EDQFSYALIAL 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + Y  YKA R  + E L+ QLP ++    A G   I   G EADD + +++
Sbjct: 62  DASKKTFRAQEYAAYKATRKPMDEKLVVQLPYIKKLFTAMGFHIISQPGIEADDFVGSFS 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEH-VIKKWGIPPEKMV 180
            +  K      I STD+D++QL++P T L      T   ++I++ +  +   G+ P++++
Sbjct: 122 NLMSKSNIDTIIYSTDRDMLQLINPNTKLKLLKTGTSIVQEINLANFALLNNGLLPKQII 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             + L GDS DN+ G+ GIG KTA  L+ +Y NLENI  N   I    + + ++E+ + A
Sbjct: 182 DYKGLVGDSSDNLVGVKGIGPKTAINLILKYTNLENIYANLEEITPSVKNK-LIEHEKMA 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            LS+K+  ++TD+ +   LE+ IL+  N   L +  ++L+   + N
Sbjct: 241 FLSKKIATIQTDLLLDETLENFILKPYNIQELDTLFESLKINNMHN 286


>gi|218506492|ref|ZP_03504370.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 156

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 108/156 (69%), Gaps = 3/156 (1%)

Query: 508 IAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +++K+L +T    K++  S ++++  D +   +   +A E+++V L+LWL+L+P+L    
Sbjct: 1   MSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAG 60

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  VYERL++P++ V+++ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ 
Sbjct: 61  LTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIG 120

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           SPKQLGDILF K+    G+KTKTGQW T+A  LE +
Sbjct: 121 SPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDL 156


>gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi]
          Length = 287

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 161/302 (53%), Gaps = 25/302 (8%)

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           + K+ S +   LP HINK+T ++HT ++   T +GR +S +PNLQ IP +    Q IR  
Sbjct: 1   MYKLYSAFYLKLPLHINKQTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----QNIREI 56

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI       I AD+ QIEL+I A I     + + + N++D+H + A+ I    I++++ +
Sbjct: 57  FIPSENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGIDEINKE 116

Query: 797 MRRHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            R  AK INF ++YG++   L T       +++   +   +   +F  + G+  +     
Sbjct: 117 DRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGLSRW----H 172

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           N V+Q         R + Y  +++ K      +   A+N P+QG+ ADI + A++ ++K+
Sbjct: 173 NSVKQT--------RALEYSTLSNRKVVFPYFSFTKALNYPVQGTCADILKLALVELYKN 224

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L    +  K++L +HDE++ EV ++    A +I+V SME +    +  +V  +V+ K++ 
Sbjct: 225 LRH--INGKIILCVHDEIIIEVDKKHQEEALKILVESMESSASFFLK-KVKCEVSAKIAQ 281

Query: 971 NW 972
           NW
Sbjct: 282 NW 283


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 143/536 (26%), Positives = 251/536 (46%), Gaps = 62/536 (11%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK-S 523
           +GHN+K+D   ++  GI      D M+ S++L  G   H ++ +A++ L YT  + L+ S
Sbjct: 72  VGHNLKFDLKFMYPLGIVPYATFDTMIGSFLL--GYERHSLSHVAERLLGYTMDKSLQLS 129

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-------EKLLHVYER----- 571
             S   + K    Q  E+A  +  V+ +L+  +R KL         E+LL          
Sbjct: 130 DWSRTALTK----QQIEYAATDVLVVRELFYKMREKLNALGETDRGEELLRTRTARVFGL 185

Query: 572 ------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
                 ++   +  ++++E+ GI +D++ ++++S E  K L  L  + Y     + +  S
Sbjct: 186 TNPATVVEMAFVQEIARLEMNGIPVDEEEIERLSREYEKKLQKLIMDFY--IKYRIDPMS 243

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQ+G  L  +L      +T+ G   T  + L + +      +++ILE R++ K      
Sbjct: 244 PKQIGSFLTGRLGLEL-PETQKGNISTDDKTLAEFSHVKE--VRDILEIRRIKKALDKLK 300

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           + L   I  R  RV+  +     +TGR++S  PN+QNIP      + +R  F +      
Sbjct: 301 E-LKGFI--RNGRVYPEFRQIGAVTGRMSSSNPNVQNIP------RDMRSLFRASEGNLF 351

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           + AD+SQIELRI A   +   + + F    D+HR  A+ +     E+++ + R+ AK +N
Sbjct: 352 VIADFSQIELRIAAEYVQDENMLRAFREGRDLHRYTASLVLEKPEEEITKEERQLAKAMN 411

Query: 806 FSIIYGISPFRLATQLRIPRS-----EAADYIKR-YFHRFPGIHEYIEKTKNFVRQNGYV 859
           F +IYGIS   L+   R         EAAD  ++ +F  F    ++ +  K  +++N  V
Sbjct: 412 FGLIYGISARGLSEYARSSYGVELEIEAADVFRQKFFKFFHAFKDWHDSVKRELKENKEV 471

Query: 860 --ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
              T+ GR              R      A+N PIQG+ AD+ + A++          L+
Sbjct: 472 VGTTLLGR------------PYRASTFTDAVNYPIQGTGADLLKLAVLMFDVETRKKGLS 519

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR-VPLKVNIKVSNNW 972
            +++  +HDE+V E P+E      + + H+M  A    I L+ VP++V   V   W
Sbjct: 520 ARVVNLVHDEIVVECPQELAEQIKESLEHAMVHAG--SIVLKHVPVEVESVVDERW 573


>gi|242036411|ref|XP_002465600.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
 gi|241919454|gb|EER92598.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
          Length = 421

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 161/314 (51%), Gaps = 43/314 (13%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKH--------DGLPVNAIAGFCNMLWKLLQNSRKE 55
           ++ + LVDG+S +YR++Y   L   +H        +G  V  I    ++L  +L     E
Sbjct: 91  KSRIMLVDGTSVMYRSYYKI-LAQLQHGQLEHADGNGDWVLTIFKALSLLLDML-----E 144

Query: 56  SIASHFAVIFDYPAV-------------------TFRNEIYPDYKANRPKIPEMLLPQLP 96
            I SH AV+FD+  V                   TFR+ +YP YK+NR   P+ ++  + 
Sbjct: 145 FIPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPAYKSNRTPTPDTVVQGMQ 204

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
            ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L  
Sbjct: 205 YLKASIKAMSIKVIEVPGVEADDVIGTLAVNSVSAGYKVRIVSPDKDFFQILSPSLRLLR 264

Query: 157 TVKEE----KIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
                       +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ ++
Sbjct: 265 IAPRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITKF 324

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLEHLILE----D 266
           G+LEN+L +   ++  + ++ ++ ++E A L + L  LR+D+P   +P +   L      
Sbjct: 325 GSLENLLKSVDEVEDDRIKQALISHSEQAILCKSLATLRSDLPSYMVPFKTADLAYKKPQ 384

Query: 267 CNGPRLISFLKALE 280
            +G + I  L+ALE
Sbjct: 385 DDGVKFIKLLRALE 398


>gi|315195335|gb|EFU25722.1| hypothetical protein CGSSa00_06690 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 292

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFANIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|206895769|ref|YP_002247070.1| DNA polymerase I [Coprothermobacter proteolyticus DSM 5265]
 gi|206738386|gb|ACI17464.1| DNA polymerase I [Coprothermobacter proteolyticus DSM 5265]
          Length = 370

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/211 (38%), Positives = 121/211 (57%), Gaps = 10/211 (4%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVD +S +YR++YA P LS K DG P   I GF  ++ KLL  +      SHF ++ D  
Sbjct: 6   LVDSNSLLYRSYYALPNLSTK-DGFPTGGIYGFLRIVSKLLTEAH-----SHFIIVGDAK 59

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
            V  R+ ++ +YK NRPK P+ L  Q   +     A  +P I  +G EADD I+  T+  
Sbjct: 60  GVLARSLVFKEYKTNRPKAPDELSLQREKLPDILGALSLPYIVYEGKEADDTISALTHFF 119

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184
           E+ GF V I ++D D+MQL+S  T +    K     ++ D    ++++G  PE+ V  ++
Sbjct: 120 ERWGFQVEIYTSDTDMMQLISQNTTVVTFKKGITQVKRYDYSTFVEEFGFTPERFVDYKS 179

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
           L GDS DNIPG+ GIG KTA+ L++++   E
Sbjct: 180 LVGDSADNIPGVNGIGPKTASSLIKDFSREE 210


>gi|49483630|ref|YP_040854.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241759|emb|CAG40449.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 292

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 140/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF + ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVSHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|296329507|ref|ZP_06871994.1| 5'3'-exonuclease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674832|ref|YP_003866504.1| 5'3'-exonuclease [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153389|gb|EFG94251.1| 5'3'-exonuclease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413076|gb|ADM38195.1| 5'3'-exonuclease [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 319

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 140/267 (52%), Gaps = 13/267 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           +   N L LVDG + ++RAF+AT +         G+P N + GF   L   ++  +    
Sbjct: 23  LMNNNKLLLVDGMALLFRAFFATAVHRNFMINESGVPTNGVNGFLKHLITAVETFQ---- 78

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H    +D  + T+RN+++ DYKANR   P  L+PQ  L + A    GI  I   G+EA
Sbjct: 79  PTHVVCCWDMGSKTYRNDLFQDYKANRNAPPVELIPQFDLAKEAAAELGIMNIGFAGYEA 138

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDI-EHVIKKWG 173
           DD I T   +   E   +TI++ D+DL+QL++       L   +   K+   E   ++ G
Sbjct: 139 DDCIGTLAALYANEA-DITIVTGDRDLLQLLTDKVSVALLQKGIGNYKVYTKETFYEETG 197

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+ ++ ++AL GDS DN PG+ GIG KTA  L++EY  ++ +L N S +  K ++  I
Sbjct: 198 VLPKALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLENLSLLP-KGQQGKI 256

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLE 260
            +      +SRKL  +   VP+   L+
Sbjct: 257 QQGLSDLEMSRKLAEIHCSVPLVCTLK 283


>gi|126661491|ref|ZP_01732543.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126617218|gb|EAZ88035.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 259

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/247 (38%), Positives = 133/247 (53%), Gaps = 27/247 (10%)

Query: 7   LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG S  +RA+YA       PL  R   G+P +   GF N L ++++    + IA  
Sbjct: 10  LMLIDGHSLAFRAYYAFAKARKGPL--RTSTGIPTSVCFGFLNSLIQVIKLENPQYIA-- 65

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD    TFR+E   +YKA+R + PE  +P +  ++   +A  I  I   G+EADDI
Sbjct: 66  --IAFDSKEPTFRHEADVNYKADRKETPEDFIPDILNLQRLLEALNITIITSPGYEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE------KIDIEHV 168
           + T      + G+ V I+S D+DL QLV+     + LY   + VK        + DI+ V
Sbjct: 124 LGTVATKGSEAGYRVKIVSGDRDLFQLVNDENNLSVLYLERNAVKSSSGEGYTEFDIDAV 183

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--- 225
            +K GI P +++  +AL GD  DNIPG+ GIG KTA  LL EYG+LE I  N   IK   
Sbjct: 184 KEKMGIKPTQVIDYKALCGDKSDNIPGVRGIGEKTAVKLLSEYGSLEEIYNNIENIKGAN 243

Query: 226 QKKRREN 232
           QKK +E 
Sbjct: 244 QKKLKEG 250


>gi|194696700|gb|ACF82434.1| unknown [Zea mays]
 gi|195654367|gb|ACG46651.1| DNA polymerase I [Zea mays]
          Length = 422

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 164/314 (52%), Gaps = 43/314 (13%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKH--------DGLPVNAIAGFCNMLWKLLQNSRKE 55
           ++ + LVDG+S +YR++Y   L   +H        +G  V  I    ++L  +L     E
Sbjct: 91  KSRIMLVDGTSMMYRSYYKI-LAQLQHGQLEHADGNGDWVLTIFKALSLLLDML-----E 144

Query: 56  SIASHFAVIFDYPAV-------------------TFRNEIYPDYKANRPKIPEMLLPQLP 96
            I SH AV+FD+  V                   TFR+ +YP YK+NR   P+ ++  + 
Sbjct: 145 FIPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPAYKSNRTPTPDTVVQGMQ 204

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
            ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L  
Sbjct: 205 YLKASIKAMSIKVIEVPGVEADDVIGTLAINSVSAGYKVRIVSPDKDFFQILSPSLRLLR 264

Query: 157 TVKEE----KIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
                       +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ ++
Sbjct: 265 IAPRGSGMVSFGVEDFVKRYGPLKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLISKF 324

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLE--HLILEDC- 267
           G+L+N+L +   ++ ++ ++ ++ ++E A L + L  LR+D+P   +P +   L+ +   
Sbjct: 325 GSLDNLLKSVDEVEDERIKQALISHSEQAILCKNLATLRSDLPHYMVPFKTADLVFKKPQ 384

Query: 268 -NGPRLISFLKALE 280
            +G + I  L+ALE
Sbjct: 385 DDGEKFIKLLRALE 398


>gi|302818496|ref|XP_002990921.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
 gi|300141252|gb|EFJ07965.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
          Length = 363

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 157/331 (47%), Gaps = 62/331 (18%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLP---------VNAIAGFCNMLWKLLQNSRK 54
           +  + LVDGS+ I+RA+Y   +    H+ +P         +     F  +L  LL  S  
Sbjct: 13  KGRILLVDGSAVIFRAYYKV-MAKAHHNLIPELESEADWVLTVFTAFTTIL-GLLDLS-- 68

Query: 55  ESIASHFAVIFD-----------------YPAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
               SHFAV+FD                 +  +TFR+ ++P+YK NRP  P+ +   L  
Sbjct: 69  ---PSHFAVVFDHKGGFADEQRCKTCVFIFTGLTFRHTMFPEYKKNRPPTPDTIYQGLDH 125

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           +R A  A GI  IE+ G EADD+IAT    A      V I+S DKD  Q++SP   L   
Sbjct: 126 LRPALVAMGIKVIEVPGVEADDVIATLAVSAATSEMKVRIVSPDKDFFQILSPDIRLLRF 185

Query: 158 VKEE----KIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIP------------------ 194
           V +        +E    ++G + P + V + +L GD+ DNIP                  
Sbjct: 186 VPKGAGMVSFGMEEFSARFGSLEPAQFVDVLSLIGDTCDNIPGKYYHTIDSRLRSITCNI 245

Query: 195 -GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
            GIPGIG KTA  L+ ++G++EN+L    ++  K+  + +L     A LS++LV LR D+
Sbjct: 246 AGIPGIGEKTAIELITKFGSVENLLQQRDKVTTKRALKGLLADKGEALLSKRLVALRADL 305

Query: 254 P---ITIPLEHLILEDC--NGPRLISFLKAL 279
           P   +   ++  I      +G RL   LKA+
Sbjct: 306 PSYMLPFTMDDFIWRKVHDDGQRLFQLLKAM 336


>gi|302802031|ref|XP_002982771.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
 gi|300149361|gb|EFJ16016.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
          Length = 363

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 157/331 (47%), Gaps = 62/331 (18%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLP---------VNAIAGFCNMLWKLLQNSRK 54
           +  + LVDGS+ I+RA+Y   +    H+ +P         +     F  +L  LL  S  
Sbjct: 13  KGRILLVDGSAVIFRAYYKV-MAKAHHNLIPELESEADWVLTVFTAFTTIL-GLLDLS-- 68

Query: 55  ESIASHFAVIFD-----------------YPAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
               SHFAV+FD                 +  +TFR+ ++P+YK NRP  P+ +   L  
Sbjct: 69  ---PSHFAVVFDHKGGFADEQRCKTCVFIFTGLTFRHTMFPEYKKNRPPTPDTIYQGLDH 125

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           +R A  A GI  IE+ G EADD+IAT    A      V I+S DKD  Q++SP   L   
Sbjct: 126 LRPALVAMGIKVIEVPGVEADDVIATLAVSAATSEMKVRIVSPDKDFFQILSPDIRLLRF 185

Query: 158 VKEE----KIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIP------------------ 194
           V +        +E    ++G + P + V + +L GD+ DNIP                  
Sbjct: 186 VPKGAGMVSFGMEEFSARFGSLEPAQFVDVLSLIGDTCDNIPGKYYHTIDSRLRSITCNI 245

Query: 195 -GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
            GIPGIG KTA  L+ ++G++EN+L    ++  K+  + +L     A LS++LV LR D+
Sbjct: 246 AGIPGIGEKTAIELITKFGSVENLLKQRDKVTTKRALKGLLADKGEALLSKRLVALRADL 305

Query: 254 P---ITIPLEHLILEDC--NGPRLISFLKAL 279
           P   +   ++  I      +G RL   LKA+
Sbjct: 306 PSYMLPFTMDDFIWRKVHDDGQRLFQLLKAM 336


>gi|323438502|gb|EGA96252.1| 5'-3' exonuclease [Staphylococcus aureus O11]
 gi|323441343|gb|EGA99005.1| 5'-3' exonuclease [Staphylococcus aureus O46]
          Length = 292

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGIPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|166710776|ref|ZP_02241983.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 328

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  +L+    + I   F    D
Sbjct: 21  LYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDVLEREDPQHITIAFDEALD 80

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ IYP YK+NR   P+ L  Q    +    A G+  +  + +EADD+I +  +
Sbjct: 81  ---SCFRHAIYPAYKSNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLIGSALH 137

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
                G    I+S DKDL QL+      +D  + ++  ++ V  + G+   ++    AL 
Sbjct: 138 SVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGMDGVKARHGVHAHQIADYLALC 197

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAETA 240
           GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + E  E A
Sbjct: 198 GDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLREQREHA 257

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            L R+L  +  D P+ +          +   L    ++L F  L  R
Sbjct: 258 LLWRRLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGPLTRR 304


>gi|21283058|ref|NP_646146.1| hypothetical protein MW1329 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486280|ref|YP_043501.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253732080|ref|ZP_04866245.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297207901|ref|ZP_06924334.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911986|ref|ZP_07129429.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204497|dbj|BAB95194.1| MW1329 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244723|emb|CAG43159.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253724178|gb|EES92907.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|296887475|gb|EFH26375.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886232|gb|EFK81434.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|329731352|gb|EGG67718.1| 5'-3' exonuclease, SAM domain protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 292

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
 gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
          Length = 531

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 176/344 (51%), Gaps = 27/344 (7%)

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NL+SP QL   L   L  P  A        T  + LE     ++  + ++L+W++L K  
Sbjct: 179 NLASPPQLLAAL-RALGVPVSA--------TDEETLEPY-AKEHAAVASLLQWKELHKFA 228

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK---IRRAFI 738
           S++ ++L   ++    R+ T Y+     +GR+   +PNLQ IP + +   +   +R  F+
Sbjct: 229 SSFGENLLAMVDT-DGRLRTDYAQIGAASGRIICSKPNLQQIPAEEEEEGQEEPVRHCFV 287

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM- 797
           +PP  +++ AD S IELRILA +++   + ++F    D+H   A  +F ++ E  + +  
Sbjct: 288 APPGYRILKADLSNIELRILAEVSRDQTMLRLFAEGKDLHAETAKLMFHLSPETDTKRHL 347

Query: 798 ------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
                 R+ AKTINF + YG+    LA +  +    A   I+ YF  + GI  ++  T  
Sbjct: 348 YKGVPGRKIAKTINFGLAYGMGANGLANRAGVDLPTAKSLIRTYFETYRGIARWLPLTAK 407

Query: 852 FVRQNGYVETIFGRRIHYDEINSP---KSSIRNINERAAINAPIQGSAADITRRAMISVH 908
              + GY  T+ GRR  +  I +       +R   ER+A N PI+G+ ADI +RA+  +H
Sbjct: 408 QALEQGYAVTLAGRRRTFASIPTSVDWNREVRASAERSAKNHPIRGTNADILKRALALLH 467

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
            SL        ++L +HDE+V E PEE +  A+ ++  +M +AC
Sbjct: 468 ASLPS---GAHLILAVHDEIVVECPEECVEEAAGVMRAAMVQAC 508


>gi|298694732|gb|ADI97954.1| probable 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 292

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|283770512|ref|ZP_06343404.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|283460659|gb|EFC07749.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus H19]
          Length = 292

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDLFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNVEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|282916707|ref|ZP_06324465.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282319194|gb|EFB49546.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus D139]
          Length = 292

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDLFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|66391259|ref|YP_238608.1| ORF004 [Staphylococcus phage Twort]
 gi|62637189|gb|AAX92300.1| ORF004 [Staphylococcus phage Twort]
          Length = 1067

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 174/365 (47%), Gaps = 34/365 (9%)

Query: 617 SGEKFNLSSPKQLGDILFTKLK--------------FPSGAKTKTGQW---KTTAQDLEQ 659
            G KF  SS    G++LF+ L               F  G K     W   KT    ++ 
Sbjct: 613 GGWKFKPSSGAHKGEVLFSILGISLPYEKEFVKDKPFTKGVKEDKLTWEDYKTNKSTIDY 672

Query: 660 I--------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           I        +C D  ++  + ++ +L   ++++   LPN +NK T  +H  ++   T + 
Sbjct: 673 IIDNIELKKDCIDVVVL--MKKYAELQTKRNSFTKKLPNLVNKETSTLHGNFNSTGTASA 730

Query: 712 RLASLEPNLQNIPIKT------DLGQKIRRAFISPPTKKLISA-DYSQIELRILAHIAKI 764
           RL+S  PNLQ +P  T      D    ++RAF S     +++  D+S IE++I+    K 
Sbjct: 731 RLSSSAPNLQQLPSHTSDVNKFDYHYPVKRAFKSRYKNGIMTELDFSAIEMKIIGLYTKD 790

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             + + F    DIH+  A+ ++   +E ++ + R++ K +NF I YG SPF  + +  + 
Sbjct: 791 PEMLESFLKGEDIHKSTASIVYNKPVEDITAEERQNTKKVNFGIAYGESPFSFSGKNNMT 850

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA +   +YF+  P +   I+ T +FV+++GYVE + G +    +  S     RN   
Sbjct: 851 VEEAEEIFNKYFNTKPSVKNSIDATHDFVQKHGYVEAMQGHQRFIRDAQSSDKKKRNQAL 910

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R + N  IQ +A  +T  A+  +   ++ + + +K++  +HD ++ +   ++I    ++ 
Sbjct: 911 RQSFNTIIQSTAGYLTNMALTFIDDFIQQNNIKSKIVATVHDSILIDTHPDDIFIIGKVS 970

Query: 945 VHSME 949
            H ME
Sbjct: 971 KHIME 975


>gi|15924430|ref|NP_371964.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927021|ref|NP_374554.1| hypothetical protein SA1273 [Staphylococcus aureus subsp. aureus
           N315]
 gi|82751040|ref|YP_416781.1| 5'-3' exonuclease [Staphylococcus aureus RF122]
 gi|148267927|ref|YP_001246870.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus JH9]
 gi|150393990|ref|YP_001316665.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus JH1]
 gi|156979759|ref|YP_001442018.1| hypothetical protein SAHV_1428 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315949|ref|ZP_04839162.1| hypothetical protein SauraC_07342 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253733314|ref|ZP_04867479.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006227|ref|ZP_05144828.2| hypothetical protein SauraM_07160 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425506|ref|ZP_05601931.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428165|ref|ZP_05604563.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430795|ref|ZP_05607177.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433553|ref|ZP_05609911.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus E1410]
 gi|257436395|ref|ZP_05612442.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus M876]
 gi|257795504|ref|ZP_05644483.1| 5'-3' exonuclease [Staphylococcus aureus A9781]
 gi|258413314|ref|ZP_05681590.1| 5'-3' exonuclease [Staphylococcus aureus A9763]
 gi|258420579|ref|ZP_05683521.1| 5'-3' exonuclease [Staphylococcus aureus A9719]
 gi|258426776|ref|ZP_05687996.1| 5'-3' exonuclease [Staphylococcus aureus A9299]
 gi|258444774|ref|ZP_05693103.1| 5'-3' exonuclease [Staphylococcus aureus A8115]
 gi|258449723|ref|ZP_05697824.1| 5'-3' exonuclease [Staphylococcus aureus A6224]
 gi|258454608|ref|ZP_05702572.1| 5'-3' exonuclease [Staphylococcus aureus A5937]
 gi|269203063|ref|YP_003282332.1| 5'-3' exonuclease, putative [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892935|ref|ZP_06301170.1| 5'-3' exonuclease [Staphylococcus aureus A8117]
 gi|282904021|ref|ZP_06311909.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905788|ref|ZP_06313643.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908757|ref|ZP_06316575.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911019|ref|ZP_06318821.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914229|ref|ZP_06322016.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919152|ref|ZP_06326887.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus C427]
 gi|282924336|ref|ZP_06332010.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus C101]
 gi|283958205|ref|ZP_06375656.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293501256|ref|ZP_06667107.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510218|ref|ZP_06668926.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus M809]
 gi|293526811|ref|ZP_06671495.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407189|ref|ZP_06816989.1| 5'-3' exonuclease [Staphylococcus aureus A8819]
 gi|295427950|ref|ZP_06820582.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275552|ref|ZP_06858059.1| 5'-3' exonuclease, putative [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297244613|ref|ZP_06928496.1| 5'-3' exonuclease [Staphylococcus aureus A8796]
 gi|297591082|ref|ZP_06949720.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|13701238|dbj|BAB42533.1| SA1273 [Staphylococcus aureus subsp. aureus N315]
 gi|14247211|dbj|BAB57602.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|82656571|emb|CAI80994.1| probable 5'-3' exonuclease [Staphylococcus aureus RF122]
 gi|147740996|gb|ABQ49294.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus JH9]
 gi|149946442|gb|ABR52378.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus JH1]
 gi|156721894|dbj|BAF78311.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253728854|gb|EES97583.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271963|gb|EEV04101.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275006|gb|EEV06493.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278923|gb|EEV09542.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281646|gb|EEV11783.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus E1410]
 gi|257284677|gb|EEV14797.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus M876]
 gi|257789476|gb|EEV27816.1| 5'-3' exonuclease [Staphylococcus aureus A9781]
 gi|257839878|gb|EEV64346.1| 5'-3' exonuclease [Staphylococcus aureus A9763]
 gi|257843527|gb|EEV67934.1| 5'-3' exonuclease [Staphylococcus aureus A9719]
 gi|257849937|gb|EEV73895.1| 5'-3' exonuclease [Staphylococcus aureus A9299]
 gi|257850267|gb|EEV74220.1| 5'-3' exonuclease [Staphylococcus aureus A8115]
 gi|257856971|gb|EEV79871.1| 5'-3' exonuclease [Staphylococcus aureus A6224]
 gi|257862991|gb|EEV85755.1| 5'-3' exonuclease [Staphylococcus aureus A5937]
 gi|262075353|gb|ACY11326.1| 5'-3' exonuclease, putative [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282313723|gb|EFB44116.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus C101]
 gi|282316962|gb|EFB47336.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus C427]
 gi|282322297|gb|EFB52621.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324714|gb|EFB55024.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327021|gb|EFB57316.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331080|gb|EFB60594.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595639|gb|EFC00603.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764932|gb|EFC05057.1| 5'-3' exonuclease [Staphylococcus aureus A8117]
 gi|283790354|gb|EFC29171.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817119|gb|ADC37606.1| DNA polymerase I [Staphylococcus aureus 04-02981]
 gi|290920369|gb|EFD97433.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096261|gb|EFE26522.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467162|gb|EFF09680.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus M809]
 gi|294967902|gb|EFG43931.1| 5'-3' exonuclease [Staphylococcus aureus A8819]
 gi|295128308|gb|EFG57942.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297178643|gb|EFH37889.1| 5'-3' exonuclease [Staphylococcus aureus A8796]
 gi|297575968|gb|EFH94684.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|302333051|gb|ADL23244.1| exonuclease [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312438157|gb|ADQ77228.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829832|emb|CBX34674.1| 5'-3' exonuclease, C-terminal SAM fold family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129152|gb|EFT85147.1| hypothetical protein CGSSa03_06911 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727070|gb|EGG63526.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 21172]
          Length = 292

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|16079259|ref|NP_390083.1| 5'3'-exonuclease [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310115|ref|ZP_03591962.1| hypothetical protein Bsubs1_12111 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314437|ref|ZP_03596242.1| hypothetical protein BsubsN3_12032 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319359|ref|ZP_03600653.1| hypothetical protein BsubsJ_11958 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323635|ref|ZP_03604929.1| hypothetical protein BsubsS_12087 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730895|sp|P54161|EX53_BACSU RecName: Full=5'-3' exonuclease
 gi|1256623|gb|AAA96617.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634620|emb|CAB14118.1| 5'3'-exonuclease [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484621|dbj|BAI85696.1| hypothetical protein BSNT_03280 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 296

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 139/263 (52%), Gaps = 13/263 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N L LVDG + ++RAF+AT +         G+P N + GF   L   ++  +     +H 
Sbjct: 4   NKLLLVDGMALLFRAFFATAVHRNFMINDSGVPTNGVNGFLKHLITAVETFQ----PTHV 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + T+RN+++ DYKANR   P  L+PQ  L + A    GI  I   G+EADD I
Sbjct: 60  VCCWDMGSKTYRNDLFQDYKANRSAPPVELIPQFDLAKEAAAELGIMNIGFAGYEADDCI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDI-EHVIKKWGIPPE 177
            T   +   E   +T+++ D+DL+QL++       L   +   K+   E   ++ G+ P+
Sbjct: 120 GTLADLFANEA-DITVVTGDRDLLQLLTDKVSVALLQKGIGNYKVYTKETFYEETGVMPK 178

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            ++ ++AL GDS DN PG+ GIG KTA  L++EY  ++ +L N S +  K ++  I +  
Sbjct: 179 ALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLENLSLLP-KGQQGKIQQGL 237

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
               +SRKL  +   VP+   L+
Sbjct: 238 SDLEMSRKLAEIHCSVPLACTLK 260


>gi|258422527|ref|ZP_05685435.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257847284|gb|EEV71290.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 292

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLARQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLNRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|258447392|ref|ZP_05695536.1| 5'-3' exonuclease [Staphylococcus aureus A6300]
 gi|257853583|gb|EEV76542.1| 5'-3' exonuclease [Staphylococcus aureus A6300]
          Length = 283

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|94499173|ref|ZP_01305711.1| exonuclease IX [Oceanobacter sp. RED65]
 gi|94428805|gb|EAT13777.1| exonuclease IX [Oceanobacter sp. RED65]
          Length = 263

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 141/256 (55%), Gaps = 9/256 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L D  + I R  YAT     K DG+  N +    N + K +++ R     SH A +FD
Sbjct: 3   VLLFDAMNLI-RRIYATQ--QDKPDGVE-NTLLLSQNAMLKDIEHFR----PSHVACVFD 54

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + T+R+ IYP YKANR  +P+ L   LP      +  GI  +     EADD+IAT   
Sbjct: 55  GHSKTWRHTIYPAYKANRNPMPKDLSAALPEFHRRFEQIGIRCLLYDYLEADDVIATLAV 114

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +++ G +V I+STDK  MQ++   T LY     ++++++ V    G  P ++V   +L 
Sbjct: 115 KSQQRGKSVCIVSTDKGYMQIMDEQTSLYHHFDRKQLNLDDVRSILGFEPSQLVDFLSLV 174

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS + +PG+ GIG KTA  LL ++G+L++ILI++  I  K  R+ +  +   A  +RK+
Sbjct: 175 GDSTNEVPGVDGIGQKTAGKLLDQFGDLDSILIHSDEISGKVGRQ-LENHFRIALRARKM 233

Query: 247 VMLRTDVPITIPLEHL 262
           V L+TD  + I L+ L
Sbjct: 234 VTLKTDCELAINLKGL 249


>gi|283470652|emb|CAQ49863.1| probable 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 292

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFTAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|303271985|ref|XP_003055354.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
 gi|226463328|gb|EEH60606.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
          Length = 1996

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 221/510 (43%), Gaps = 88/510 (17%)

Query: 550  LQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
            L L  L+R KL   +    L      ++ P++ V++ ME  G+      L +     +K 
Sbjct: 1480 LSLDALVRAKLADPRAPSGLEDALRAIEMPLVPVLASMERAGVAFAPATLSRQLRRATKR 1539

Query: 606  LLSLEENIY------------DLSGEKFNLSSPKQLGDILFTK------LKFPSGAKTKT 647
            +  +E                 ++  +FNL+S   +  +LF         + P GAK   
Sbjct: 1540 VREIETEAVAVVATHFACRHPGMAPPEFNLASSDDVARVLFDAPPAGLGAEPPRGAKPTA 1599

Query: 648  GQWK-TTAQD--LEQINCGDNPII---KNILEWRQLSKI-----------KSTYADSLPN 690
             + + +T QD  L  +     PI    K +LE R L K+           KS        
Sbjct: 1600 ARGRRSTRQDDLLALVREQGGPIAAFPKLVLEHRSLRKLLDEANEFGRLAKSELGGDAAA 1659

Query: 691  HINKR-TQRVHTFYSLASTMTGRLASLEPNLQNIP----------------------IKT 727
              ++  T R+       +T TGRLA  +PNLQ +P                        T
Sbjct: 1660 AADESVTIRLRGVIHQTNTGTGRLAMEDPNLQCVPRPREFALSRAYPERLSASGRVSPGT 1719

Query: 728  DLGQK----IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE-NSLDIHRMVA 782
            D G +    IR AF +P  KKLI+ DY QIELR++AH++    L       S+D  +++A
Sbjct: 1720 DAGAEETLAIRNAFRAPRGKKLIAFDYKQIELRVIAHLSCDRGLIAALCVRSVDPFKVIA 1779

Query: 783  A--EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  +  G   + VS + R  AK + + I YG    R    + +   EA   I+ +    P
Sbjct: 1780 ARWKGDGTTPKNVSDEDRAKAKELCYGICYGAGVGRYQQAMGVTELEARAAIEDFKRSLP 1839

Query: 841  GIHEYIEKTKNFVRQNG--YVETIFGRRIHYDEINSPKSS--IRNINERAAINAPIQGSA 896
            G+  +        R+    +V TI GR      +N+  +   IR  +ER AIN   QGSA
Sbjct: 1840 GVERWKSALVKDARERTPPHVRTIAGRCRFLPSLNATGAGGEIRAADERKAINTACQGSA 1899

Query: 897  ADITRRAMISVHKSL-------EDHKL-------ATKMLLQIHDELVFEVPEEEITTASQ 942
            ADI +R MI +H  L       +D +        A +M+LQ+HDEL+FEV E ++  A +
Sbjct: 1900 ADIVKRVMIELHAKLTSGGGADDDDEWAPLREVDACEMVLQVHDELLFEVDERKVDVAVR 1959

Query: 943  IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             I   ME+A     +++VPL V + V ++W
Sbjct: 1960 AIRGVMERA-REVHDMKVPLPVRVSVGDDW 1988


>gi|323488671|ref|ZP_08093913.1| 5'-3' exonuclease [Planococcus donghaensis MPA1U2]
 gi|323397689|gb|EGA90493.1| 5'-3' exonuclease [Planococcus donghaensis MPA1U2]
          Length = 299

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 152/295 (51%), Gaps = 31/295 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           H+ L+DG + ++R+F+AT  ++   R  +GL  N + GF     + +  ++     +H A
Sbjct: 5   HVLLIDGMALLFRSFFATSAVNQYFRTTEGLATNGVQGFT----RHVLTAKTMMKPTHMA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D  + TFR +++  YKANRP  PE ++ Q    +  ++  G       G EADD I 
Sbjct: 61  VCWDMGSKTFRTDLFDGYKANRPAPPEDMVHQFDWAQEISEQLGWKNYGEAGIEADDFIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---------YDTVKEEKIDIEHVIKKWG 173
           ++T   + +    TII+ DKD++QL++P+  +         YD   E +      I+++G
Sbjct: 121 SFTKQWQDQ-VDFTIITGDKDMLQLLTPSVNIAFMKKGFHVYDVYTEARF-----IEEYG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +   ++A  GD  D  PG+ GIG KTA  L+Q YG+   +L     +K  ++++ I
Sbjct: 175 IQPSQFADVKAFMGDPSDGYPGVKGIGPKTALQLIQNYGSTNGVLEAIEELKPAQKKK-I 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILED--------CNGPRLISFLKALE 280
            E+ +   LS+KL +++ D+ + + LE + + +        C   +L    K LE
Sbjct: 234 DEHKDMLLLSKKLAVIKCDIQLDVSLEEITVPNYTNDHIQLCRDQQLTLLAKQLE 288


>gi|311068712|ref|YP_003973635.1| 5'3'-exonuclease [Bacillus atrophaeus 1942]
 gi|310869229|gb|ADP32704.1| 5'3'-exonuclease [Bacillus atrophaeus 1942]
          Length = 296

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 142/260 (54%), Gaps = 13/260 (5%)

Query: 7   LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG + ++R+F+AT +         G+P N + GF   L   ++  +     +H   
Sbjct: 5   LLLVDGMALLFRSFFATAVHRNFMINDSGVPTNGVNGFLKHLITAMERFQ----PTHVVC 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + T+RN+++ DYKANR + P  L+PQ  L + A    GI  I ++G+EADD I T
Sbjct: 61  CWDMGSKTYRNDLFQDYKANRSQPPIELVPQFDLAKEAAAELGILNIGLKGYEADDCIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDIEHVI-KKWGIPPEKM 179
              +  +E   +TI++ DKDL+QL+S       L   +   KI  + +  ++ G+ P+ +
Sbjct: 121 LAALFTEEA-EITIVTGDKDLLQLLSDGINVALLQKGIGNYKIYTKDLFYEETGVLPKAL 179

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DN PG+ GIG KTA  L+ EY  +E +L N + +  K ++  I    + 
Sbjct: 180 IDVKALMGDSSDNYPGVKGIGEKTAYKLIGEYETIERLLENIALLP-KGQQGKIQAGLKE 238

Query: 240 ARLSRKLVMLRTDVPITIPL 259
             +SR+L  +   VP+T  L
Sbjct: 239 LGISRQLAEINCAVPLTCAL 258


>gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 808

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 164/634 (25%), Positives = 263/634 (41%), Gaps = 105/634 (16%)

Query: 439 STGKNTLTKEILSYLKKF-FENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV-- 495
           S  ++   K +L  L ++ F+NE  LKI  N+ ++     +YG  + G     L+ +V  
Sbjct: 171 SMDRDEARKLVLDLLDEYLFKNEKVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRC 230

Query: 496 --LDSGRSSHDIASIAQKW-LSYTRKEI-----------LKSRKSSIPIDKISDSQVQE- 540
             + + +  ++       W L    KEI           LK  K     D+I  S+ +  
Sbjct: 231 LQIAAPQKINNPKKPTSGWGLKPATKEIFGVTMNDFSALLKKYKVDF-FDEIDASKGEGL 289

Query: 541 -HAIENSNVILQ---LWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            ++ E+++  LQ    W  +  ++   E+ LH   +++ P   V+  ME  G+  D +L 
Sbjct: 290 LYSAEDADYALQHYEYWSQIASQIPQYEEWLH---KIEMPFTRVIGLMEYWGMNWDPNLA 346

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNL-------SSPKQLGDILFTKLKFPSGAKTKTG 648
            Q   E         E I  ++ E FN+           ++  ++F  LK P     KTG
Sbjct: 347 TQKKQEAEIMQEQAAERIKQVAKETFNVDINTGKSGKTNEVKSLMFDYLKIPVAKYGKTG 406

Query: 649 ----------------------------------QWKTTAQD----LEQINCG------- 663
                                              W+    D    L+++  G       
Sbjct: 407 ASLDQEALIDMAFMLENKLNDIDEEKYLSIPLPENWEIIDPDKDPTLDKLERGAIRIAKR 466

Query: 664 -DNPIIKNILEW-RQLSKIKSTYADSLPNHINKR-------TQRVHTFYSLASTMTGRLA 714
             +P  +  LE   QL KI+  Y   L +HI  R       + R+H  YS   T TGRL 
Sbjct: 467 EPHPYKEQALEVIDQLKKIQK-YTTLLSSHIVGREKYLNFMSGRIHAGYS-PFTETGRLN 524

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PN QN+P   +   KIR  F+  P K L   D+S  ELR++A  +    + ++F   
Sbjct: 525 SFNPNGQNVPRPDNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTG 584

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP------FRLATQLRIPRSEA 828
            D+HR  A+ + G   +++  + R  AK  NF I YG +       F+    +R    E 
Sbjct: 585 GDMHRRTASVMTGKPEDEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDEC 644

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           A  +      +  I EY  K     R+ GYV+TI+G       INS     R   ER A 
Sbjct: 645 AQIVNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAA 704

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHK-----LATKMLLQIHDELVFEVPE--EEITTAS 941
           N P+QGSAADI ++    +++S+   +      +  M+ QIHDE++FE+ +  E +  A 
Sbjct: 705 NTPVQGSAADIMKKVQNEIYESIGKQEGVLAHGSADMIAQIHDEIIFEIDDDPEIVVAAE 764

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           + I   ME+  +P     VP++    V   W E+
Sbjct: 765 KQIKQVMEQPPVP--GFPVPIEAEGSVGYRWGEK 796


>gi|281356102|ref|ZP_06242595.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Victivallis
           vadensis ATCC BAA-548]
 gi|281317471|gb|EFB01492.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Victivallis
           vadensis ATCC BAA-548]
          Length = 323

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 95/254 (37%), Positives = 138/254 (54%), Gaps = 12/254 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+D  S I+RAFYA   L+    G P NA+  F     +LL   +KE   S  A++
Sbjct: 3   DELILIDAYSQIFRAFYAIRQLTNSR-GEPTNAVFVFT----RLLLGIQKEYPTSRGAML 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   V FR ++ P+YKANRP +PE L  Q+P++R   +AFG P +E   +EADD+ A +
Sbjct: 58  FDCGKVEFRMKLNPEYKANRPPMPEALRTQIPVIRELAEAFGWPLLEEPEYEADDLAAAF 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              AE     V IIS+DKDL QLV     +          E+  +  +  K+ +PP  ++
Sbjct: 118 ARAAEG---PVKIISSDKDLAQLVDDRVTMLSPAPRNAGFEERGVAEITAKFQVPPALLI 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GDS DNIPG+PGIG K AA LL  YG     L +  ++   K  + +       
Sbjct: 175 DYLALLGDSSDNIPGVPGIGAKGAAQLLNTYGPASEWLEHPEKLAGTKFEKKLAGAGNIL 234

Query: 241 RLSRKLVMLRTDVP 254
           + +++L+ LR+D+P
Sbjct: 235 KRNQELIRLRSDLP 248


>gi|70949566|ref|XP_744181.1| DNA polymerase 1 [Plasmodium chabaudi chabaudi]
 gi|56524028|emb|CAH74320.1| DNA polymerase 1, putative [Plasmodium chabaudi chabaudi]
          Length = 1069

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 155/307 (50%), Gaps = 49/307 (15%)

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           II NI  +R+  K+   Y ++LP HI K T ++H  ++     TGRL+  +PNLQNI  K
Sbjct: 683 IISNIKLYRESKKLFQNYIENLPKHIQKNTNKIHCNFNQLGASTGRLSCDQPNLQNIHSK 742

Query: 727 TDLGQKIRRAFISPPTKK------------LISADYSQIELRILAHIAKITPLYQVFENS 774
                 ++   I P + K            L++ DY Q+EL ++A+++  + L ++  NS
Sbjct: 743 FRCTISLKNDDIKPISVKTKHVKNKSVNQNLLTFDYKQMELFVMAYLSFDSQLLKMLNNS 802

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+    A  +F  N   V+ ++RR  KT+ + I+YG S   LA  L +  + A   I  
Sbjct: 803 -DVFVETAKVLFNTN--DVTKELRRMTKTVIYGILYGQSENGLAKNLLVSENFAKSLIDN 859

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           +F+ +P + ++++K K  V+    V T+ GR+   D       +I+N   R ++N PIQG
Sbjct: 860 FFNFYPNVFKFMQKQKILVKNINSVYTLIGRKRLVD------PTIKN-KYRISMNTPIQG 912

Query: 895 SAADITRRAMISVHKSL---------------------------EDHKLATKMLLQIHDE 927
            AADI + A++S HK L                           +++  +TK++LQIHDE
Sbjct: 913 CAADIMKFALLSCHKILSYFDNPNQDIDTFLKMNNINISLLKKYKNYIKSTKLILQIHDE 972

Query: 928 LVFEVPE 934
           L+F+  E
Sbjct: 973 LLFQCDE 979


>gi|282927966|ref|ZP_06335575.1| 5'-3' exonuclease [Staphylococcus aureus A10102]
 gi|282590263|gb|EFB95343.1| 5'-3' exonuclease [Staphylococcus aureus A10102]
          Length = 292

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRFAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|50364870|ref|YP_053295.1| 5'-3' exonuclease [Mesoplasma florum L1]
 gi|50363426|gb|AAT75411.1| 5'-3' exonuclease [Mesoplasma florum L1]
          Length = 317

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 143/257 (55%), Gaps = 14/257 (5%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + ++DG   +++ +Y T     L+   +G+P+NAI  F   + +L++ +   SI     V
Sbjct: 10  ILIIDGYHLLHKGYYGTLKRKKLATNREGVPINAIYTFVAKINQLVKKNNYYSII----V 65

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D     +R E+YP+YKA R + PE L+PQ  ++R    A  IP  E+  +EADDII T
Sbjct: 66  TLDMDEGCWRRELYPEYKAKRKETPEDLVPQKQIIREFLTAANIPWYEMPRYEADDIIGT 125

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEK---IDIEHVIKKWGIPPEKM 179
              IA K  + V I+S DKD+ QLV   TT + ++ K+++   ID E V++K+G  P ++
Sbjct: 126 INRIALKLDYDVHILSNDKDIFQLVGERTTVITNSSKDDEHILIDHEKVVEKFGCHPSQV 185

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-KQKKRRENILEYAE 238
             ++AL GD  DNI G+  + Y  A  LL +YGN++NI  +   I K   +R N  E  E
Sbjct: 186 ADIKALMGDPSDNIKGVRYLHYAQAIDLLNKYGNIDNIFEHIDEINKNISKRLN--ESKE 243

Query: 239 TARLSRKLVMLRTDVPI 255
               ++K+  ++  +PI
Sbjct: 244 LILTNKKITTIQDRLPI 260


>gi|309799220|ref|ZP_07693469.1| DNA polymerase I [Streptococcus infantis SK1302]
 gi|308117154|gb|EFO54581.1| DNA polymerase I [Streptococcus infantis SK1302]
          Length = 197

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 109/196 (55%), Gaps = 11/196 (5%)

Query: 7   LFLVDGSSFIYRAFYA--TPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DGSS  +RAF+A    L   K+D GL  NAI GF  ML  LL+  +     SH  V
Sbjct: 6   LLLIDGSSVAFRAFFALYQQLDRFKNDNGLHTNAIYGFHLMLNHLLERVQ----PSHILV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T
Sbjct: 62  AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +AEK+ F VTI+S DKDL+QL    T +  + K     E    E++++K GI P + 
Sbjct: 122 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKMGITPTQF 181

Query: 180 VCLQALTGDSIDNIPG 195
           + L+AL GD  DNIPG
Sbjct: 182 IDLKALMGDKSDNIPG 197


>gi|47459323|ref|YP_016185.1| DNA polymerase I [Mycoplasma mobile 163K]
 gi|47458653|gb|AAT27974.1| DNA polymerase I [Mycoplasma mobile 163K]
          Length = 295

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 12/267 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + L+DG+   +++F+AT  +    +   G+P NA+  F N ++KLL    KE   +H 
Sbjct: 4   NKILLIDGNLLAFKSFFATAYIGSSLQTSTGIPTNAVHTFINTIFKLL----KELNPTHI 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD P  TFR+E + +YK+ R   P+ L  Q   ++       I   E    EADD+I
Sbjct: 60  FVAFDKPGKTFRHEFFEEYKSKRQSTPDSLKVQFIYIKRVLSKMRICWFEESLIEADDLI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---YDTVKEEKIDIEH-VIKKWGIPPE 177
           AT+          V + S+DKDL+QLV+    +   +D   E  ID E+   ++  I P 
Sbjct: 120 ATWVSKINTSKDEVIVYSSDKDLLQLVAKNVSVISKWDK-NEYVIDNENNFFERHSIFPN 178

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++   +AL GD+ DN  GI GIG KTA  LL E+  +EN+  N + IK KK +E +    
Sbjct: 179 QIPDFKALAGDASDNYLGISGIGPKTAINLLSEFQIIENLYENLANIKSKKVKEVLELEK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLIL 264
           + A L +K+  L+TDV +   LE + L
Sbjct: 239 DKAFLYKKIAKLKTDVNLNFSLEDIKL 265


>gi|57650395|ref|YP_186324.1| 5'-3' exonuclease, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161192|ref|YP_494029.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195173|ref|YP_499974.1| hypothetical protein SAOUHSC_01454 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221562|ref|YP_001332384.1| hypothetical protein NWMN_1350 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509607|ref|YP_001575266.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140993|ref|ZP_03565486.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258451098|ref|ZP_05699133.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262048967|ref|ZP_06021846.1| hypothetical protein SAD30_1245 [Staphylococcus aureus D30]
 gi|262051616|ref|ZP_06023836.1| hypothetical protein SA930_1893 [Staphylococcus aureus 930918-3]
 gi|282921685|ref|ZP_06329402.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|284024439|ref|ZP_06378837.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           132]
 gi|294848403|ref|ZP_06789149.1| hypothetical protein SKAG_00465 [Staphylococcus aureus A9754]
 gi|304380978|ref|ZP_07363636.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284581|gb|AAW36675.1| 5'-3' exonuclease, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|87127166|gb|ABD21680.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202731|gb|ABD30541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374362|dbj|BAF67622.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368416|gb|ABX29387.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257861153|gb|EEV83966.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259160457|gb|EEW45481.1| hypothetical protein SA930_1893 [Staphylococcus aureus 930918-3]
 gi|259162899|gb|EEW47462.1| hypothetical protein SAD30_1245 [Staphylococcus aureus D30]
 gi|269940934|emb|CBI49318.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282593947|gb|EFB98936.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|294824429|gb|EFG40852.1| hypothetical protein SKAG_00465 [Staphylococcus aureus A9754]
 gi|302751270|gb|ADL65447.1| exonuclease [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340503|gb|EFM06439.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315197817|gb|EFU28151.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140388|gb|EFW32244.1| 5'-3' exonuclease, SAM fold protein [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320142685|gb|EFW34488.1| 5'-3' exonuclease, SAM fold protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329314117|gb|AEB88530.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus T0131]
 gi|329723214|gb|EGG59745.1| 5'-3' exonuclease, SAM domain protein [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 292

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 17/260 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L         G P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGEPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIP 175
            T    Y  + +   V II+ DKDL+Q ++    ++   K   I   + + +    + + 
Sbjct: 119 GTLAQQYSTDND---VYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALE 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +   +R + I +
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNK-IND 234

Query: 236 YAETARLSRKLVMLRTDVPI 255
             +   LS++L  + T VPI
Sbjct: 235 NLDELYLSKRLAEIHTQVPI 254


>gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
 gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
          Length = 808

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 184/753 (24%), Positives = 301/753 (39%), Gaps = 162/753 (21%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASF--------KIITDTMDAFHSKPIAIAISTLDQKDD 419
           Y  I+   D+++++++    G A F        +I T    AF     A A   +D K+ 
Sbjct: 61  YQAILTVSDLKKYLERCVQTGKAGFDWETVASEEIRTHYKKAFEDIEEACATGIIDDKEA 120

Query: 420 TS----------------FKVETIFIDLSV--HTS-------------QDSTGKNTLTKE 448
            S                +K E   + LS   H S             + S  +    K 
Sbjct: 121 ESRSESLQKAYLKTPLDPWKGEICTVSLSAAAHESRVVPISHKVGQVFEPSMDRGEARKL 180

Query: 449 ILSYLKKF-FENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLM-------------- 492
           +L  L ++ F+NE  LKI  N+ ++     +YG  + G   D ++M              
Sbjct: 181 VLDLLDEYLFKNEKVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKIN 240

Query: 493 -------SYVLDS------GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
                   + L        G + +D A++ +K+      EI  S+   +    +  ++  
Sbjct: 241 NPKKPTSGWGLKPATKHIFGVTMNDFAALLKKYKVDFFDEIDASKGEGL----LYSAEDA 296

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A+++     Q+   + P+   E  LH   +++ P   V+  ME  G+  D +L  Q  
Sbjct: 297 DYALQHYEYWSQIAAQI-PRY--EDWLH---KIEMPFTRVIGLMEYWGMNWDPNLATQKK 350

Query: 600 AEISKNLLSLEENIYDLSGEKFNL-------SSPKQLGDILFTKLKFPSGAKTKTG---- 648
            E         E I  ++ E FN+           ++  ++F  LK P     KTG    
Sbjct: 351 QEAEIMQEQAAERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLD 410

Query: 649 ------------------------------QWKTTAQD----LEQINCG--------DNP 666
                                          W++   D    L+++  G         +P
Sbjct: 411 QEALIDMAFMLENKLNDIDEEKYLSISLPENWESIDPDKDPTLDKLERGAIRIAKREPHP 470

Query: 667 IIKNILEW-RQLSKIKSTYADSLPNHINKR-------TQRVHTFYSLASTMTGRLASLEP 718
             +  LE   QL KI+  Y   L +HI  R       + R+H  YS   T TGRL S  P
Sbjct: 471 YKEQALEVIDQLKKIQK-YTTLLSSHIIGREKYLNFMSGRIHAGYS-PFTETGRLNSFNP 528

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           N QN+P   +   KIR  F+  P K L   D+S  ELR++A  +    + ++F    D+H
Sbjct: 529 NGQNVPRPDNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMH 588

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP------FRLATQLRIPRSEAA--- 829
           R  A+ + G +  ++  + R  AK  NF I YG +       F+    +R    E A   
Sbjct: 589 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIV 648

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + +K  + R P   EY  K     R+ GYV+TI+G       INS     R   ER A N
Sbjct: 649 NAVKTAYKRIP---EYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAAN 705

Query: 890 APIQGSAADITRRAMISVHKSLEDHK-----LATKMLLQIHDELVFEVPEE-EITTA-SQ 942
            P+QGSAADI ++    +++S+   +      +  M+ QIHDE++FE+ ++ EI  A  +
Sbjct: 706 TPVQGSAADIMKKVQNEIYESIGKQEGVLAHGSADMIAQIHDEIIFEIDDDPEIVVAVEK 765

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            I   ME+  +P     VP++    V   W E+
Sbjct: 766 QIKQVMEQPPVP--GFPVPIEAEGSVGYRWGEK 796


>gi|226530274|ref|NP_001151880.1| DNA polymerase I [Zea mays]
 gi|195650551|gb|ACG44743.1| DNA polymerase I [Zea mays]
          Length = 422

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 163/314 (51%), Gaps = 43/314 (13%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKH--------DGLPVNAIAGFCNMLWKLLQNSRKE 55
           ++ + LVDG+S +YR++Y   L   +H        +G  V  I    ++L  +L     E
Sbjct: 91  KSRIMLVDGTSMMYRSYYKI-LAQLQHGQLEHADGNGDWVLTIFKALSLLLDML-----E 144

Query: 56  SIASHFAVIFDYPAV-------------------TFRNEIYPDYKANRPKIPEMLLPQLP 96
            I SH AV+FD+  V                   TFR+ +YP YK+NR   P+ ++  + 
Sbjct: 145 FIPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPAYKSNRTPTPDTVVQGMQ 204

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
            ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L  
Sbjct: 205 YLKASIKAMSIKVIEVPGVEADDVIGTLAINSVSAGYKVRIVSPDKDFFQILSPSLRLLR 264

Query: 157 TVKEE----KIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
                       +E  +K++G + P + V + AL+G   DNIPG+ GIG   A  L+ ++
Sbjct: 265 IAPRGSGMVSFGVEDFVKRYGPLKPSQFVDVVALSGYKADNIPGVEGIGDINAVKLISKF 324

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLE--HLILEDC- 267
           G+L+N+L +   ++ ++ ++ ++ Y+E A L + L  LR+D+P   +P +   L+ +   
Sbjct: 325 GSLDNLLKSVDEVEDERIKQALISYSEQAILCKNLATLRSDLPHYMVPFKTADLVFKKPQ 384

Query: 268 -NGPRLISFLKALE 280
            +G + I  L+ALE
Sbjct: 385 DDGEKFIKLLRALE 398


>gi|193216862|ref|YP_002000104.1| 5'-3' exonuclease, exo domain of DNA polymerase I [Mycoplasma
           arthritidis 158L3-1]
 gi|193002185|gb|ACF07400.1| 5'-3' exonuclease, exo domain of DNA polymerase I [Mycoplasma
           arthritidis 158L3-1]
          Length = 293

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 146/294 (49%), Gaps = 17/294 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N + ++DG+   YR+++AT    ++    +G   NA+ GF N L  L++  +     +H
Sbjct: 2   KNKILVIDGTYLAYRSYFATTYKGVVMANQEGTLTNAVFGFFNTLLTLIKMQK----VTH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E++  YKA R K P     QL  ++    A  I      GFEADDI
Sbjct: 58  VFVAFDSKIKTFRHELFSGYKATRQKAPSDFYVQLNFIQQLLDALNITNFYKDGFEADDI 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE---KIDIEHVIKKWGIPPE 177
           IA    I  ++   + I S D+DL QL++P   +     +    +++  +  + +   P 
Sbjct: 118 IAKVVSIFSED--EILIHSADQDLNQLINPNVAIIKKNNKGVYFELNANNFGEYYDFLPS 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++  +AL GDS DN  G+PGIG K+AA LL EYG LENI  N   IK   + + I    
Sbjct: 176 QVIDYKALVGDSSDNFKGVPGIGPKSAAGLLHEYGTLENIFANIESIKPALKAK-IEANK 234

Query: 238 ETARLSRKLVMLRTDVPITIPLEH---LILEDCNGPRLISFLKALEFTKLINRV 288
           E A   + L  LRTD  I  P+ H   LI      P     ++ LE   L NR+
Sbjct: 235 EEALRDKYLATLRTDFEIP-PISHEELLISAITLSPDASYIIRRLELNSLKNRL 287


>gi|110589136|gb|ABG77077.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score =  138 bits (348), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/154 (44%), Positives = 100/154 (64%), Gaps = 5/154 (3%)

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I RSEA +Y+  YF R+PG+  Y+E+T+   R+ GYVET+FGRR++  +I + +   R
Sbjct: 1   LGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGRRLYLPDIKA-RGPRR 59

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ER AINAP+QG+AADI +RAM++V   +E  +   ++L+Q+HDELV EV E  + TA
Sbjct: 60  SAAERTAINAPMQGTAADIIKRAMLAVDGWIEADRPPLRLLMQVHDELVLEVQESFLETA 119

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            Q +   ME A      L VPL V + + +NW E
Sbjct: 120 CQHLRDCMESAA----ELAVPLLVEVGIGDNWDE 149


>gi|115754782|ref|XP_790049.2| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
 gi|115960873|ref|XP_001194514.1| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
          Length = 1312

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 172/332 (51%), Gaps = 17/332 (5%)

Query: 609  LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
            +E   Y  +G  F ++S  QL  +LF +LK     +   GQ K    +++ +      ++
Sbjct: 782  VERQCYKKAGHPFQITSHIQLRQVLFDELKL---DELCPGQ-KLARTNVQNLKSTSEMVL 837

Query: 669  KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
              + +   L ++  T+  ++ N I K+  +VH   + +      ++S  P        T 
Sbjct: 838  HKLKDLHPLPELVLTHRQNIQN-IPKQPLQVHKDANGSVVNESTVSSTAP-------ATT 889

Query: 729  LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIF 786
            L   +R  F S      I+AD+  IELRILAH+++   L +VF +  S DI   +  E  
Sbjct: 890  LW--MREPFFSHEGWSFIAADFQSIELRILAHLSQDAVLLKVFNDAGSTDIFVQLTCEWL 947

Query: 787  GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
            G+N+E V    R   K I +S+IYG+   RLA  L   +  A  + K +  +F G++ + 
Sbjct: 948  GLNLEDVKTGDRERTKRIVYSVIYGVGAERLAETLNDTKENAKAFTKSFLVKFKGVNTFA 1007

Query: 847  EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
            ++  +  +++G+V+TIF R      I+S    +R+  ER A+N  IQGSAADI + AMI 
Sbjct: 1008 QRCISECQRHGHVKTIFHRHRLISNISSQNFHVRSHAERQAVNFVIQGSAADICKLAMIH 1067

Query: 907  VHKSL-EDHKLATKMLLQIHDELVFEVPEEEI 937
            +   L E + +  ++L+QIHDEL+FEV +E+I
Sbjct: 1068 IMTVLSERNTVRARLLVQIHDELLFEVHDEDI 1099


>gi|169825451|ref|YP_001695626.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|168994728|gb|ACA42267.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
          Length = 300

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/278 (35%), Positives = 152/278 (54%), Gaps = 26/278 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           EN L LVDG + + R F+AT    +   DG   N ++ F  M++       +   +++  
Sbjct: 22  ENWL-LVDGDNILNRTFHATKYEYKTAPDGRHTNGVSAFLKMVF-----GYQRKFSANIV 75

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD     FR E+YP+YK  R + PE L+ Q P ++    A  IP+ E   FEADD+IA
Sbjct: 76  VFFD-QGKGFRKELYPEYKDGRKEKPEELIQQFPTLKEVLLAADIPSFESDYFEADDLIA 134

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI-------KKWGIP 175
           +   I++ +G    I+S DKDL+QLVS    +   +++   +++ +I       +  G+ 
Sbjct: 135 SS--ISKLQGHKY-ILSNDKDLLQLVSDDVTV---IRKGNKNVDSLITPETFTNEYPGMT 188

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR-ENIL 234
           P ++V ++AL GDS DNI G+PGIG K A  L+Q YG +EN++++    K+ KR    ++
Sbjct: 189 PLQIVDIKALAGDSSDNIKGVPGIGEKGAFNLVQFYGTVENMIVSTECPKELKRYFTKLM 248

Query: 235 EYAETARLSRKLVMLRTDVPITI---PL-EHLILEDCN 268
              E A  S+ L  LR D  ITI   PL EH + E C+
Sbjct: 249 AAKEDAIFSKMLTTLRKDASITIQARPLNEHGLREQCD 286


>gi|167946072|ref|ZP_02533146.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 68/152 (44%), Positives = 99/152 (65%), Gaps = 5/152 (3%)

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I RSEA +Y+  YF R+PG+  Y+E+T+   R+ GYVET+FGRR++  +I + +   R+ 
Sbjct: 3   IERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGRRLYLPDIKA-RGPRRSA 61

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI +RAM++V   +E  +   ++L+Q+HDELV EV E  + TA Q
Sbjct: 62  AERTAINAPMQGTAADIIKRAMLAVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQ 121

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   ME A      L VPL V + + +NW E
Sbjct: 122 HLRDCMESAA----ELAVPLLVEVGIGDNWDE 149


>gi|134093425|ref|YP_001098500.1| putative 5'-3' exonuclease [Herminiimonas arsenicoxydans]
 gi|133737328|emb|CAL60371.1| Putative 5'-3' exonuclease [Herminiimonas arsenicoxydans]
          Length = 261

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 20/254 (7%)

Query: 7   LFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L  +DG + + R + A   P  + K D    +++A F     KLL   +     +H    
Sbjct: 4   LLAIDGLNIVRRVYEANVEPDTAAKADAALRHSLASF----RKLLATHQ----PTHVLPA 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT- 123
           FD+   T+R+++YP Y+  R  +PE+L  +LP       A G+  I     EADD+IAT 
Sbjct: 56  FDFGGHTWRHDLYPQYREKREPMPEVLRERLPDFYAQLSALGLKVISAPEVEADDVIATG 115

Query: 124 -YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              ++ E  G AV I STDKDL  L++    ++D  K E  D + V +K+G+PPE +  L
Sbjct: 116 VMRWLGEGRGDAV-IASTDKDLHVLIAHGAVIWDHFKSEWHDSKWVEEKFGVPPEMLADL 174

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRRENILEYAET 239
            AL GD  D+IPG+  +G KTAA LLQ YGN+E I+  A  +K    ++ R++  + A  
Sbjct: 175 LALMGDVSDSIPGVSKVGVKTAAKLLQSYGNIERIMAGAGILKDGLGERLRKDSAQLA-- 232

Query: 240 ARLSRKLVMLRTDV 253
             +SR+LV L+TDV
Sbjct: 233 --ISRQLVELKTDV 244


>gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 607

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 192/407 (47%), Gaps = 32/407 (7%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF-NLSSPKQLGDILFTKLKFPSGAK 644
           TG  +DQ+ L  ++         LE  + D+  EK+  +S P+  G+I     K P+  K
Sbjct: 204 TGASLDQEALIDMA-------FMLENKLNDIDEEKYLGVSLPENWGNI--DPEKDPTLDK 254

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            + G  +   ++          +I  + + ++ + + S++      ++N  + R+H  YS
Sbjct: 255 LERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYS 314

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
              T TGRL S  PN QN+P   +   KIR  F+  P K L   D+S  ELR++A  +  
Sbjct: 315 -PFTETGRLNSFNPNGQNVPRPDNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGD 373

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP------FRLA 818
             + ++F    D+HR  A+ + G +  ++  + R  AK  NF I YG +       F+  
Sbjct: 374 EVMIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTK 433

Query: 819 TQLRIPRSEAA---DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
             +R    E A   + +K  + R P   EY  K     R+ GYV+TI+G       INS 
Sbjct: 434 YMIRKTLDECAQIVNAVKTAYKRIP---EYQRKIVLEAREQGYVQTIYGYMRLLPGINSA 490

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-----LATKMLLQIHDELVF 930
               R   ER A N P+QGSAADI ++    +++S+   +      +  M+ QIHDE++F
Sbjct: 491 NRRDRGSAERQAANTPVQGSAADIMKKVQNEIYESIGKQEGVLSHGSADMIAQIHDEIIF 550

Query: 931 EVPEE-EITTA-SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+ ++ EI  A  + I   ME+  +P     VP++    V   W E+
Sbjct: 551 EIDDDPEIVVAVEKQIKQVMEQPPVP--GFPVPIEAEGSVGYRWGEK 595


>gi|330684998|gb|EGG96673.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU121]
          Length = 292

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 143/262 (54%), Gaps = 21/262 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R F+AT L ++      G+P N I GF   ++  +     E   +H 
Sbjct: 3   NKVLLVDGMALLFRHFFATSLHNQFMYNSKGVPTNGIQGFVRHIFSAIH----EIQPTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I +  +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFEGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVTNYEADDVI 118

Query: 122 ATY--TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG----IP 175
            T   TY  + +   V II+ D+DL+Q ++    ++   K   I   + + ++     + 
Sbjct: 119 GTLAQTYSVDND---VYIITGDRDLLQCINENVEVWLIKKGFNIYNRYTLNRFNEEYELA 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENI 233
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+YG++E ++  I+A    Q+K+   I
Sbjct: 176 PQQLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYGSVEGVIEQIDALTPGQRKK---I 232

Query: 234 LEYAETARLSRKLVMLRTDVPI 255
            +      LS++L  + T+VPI
Sbjct: 233 NDNMNELHLSKRLAEIHTNVPI 254


>gi|239636884|ref|ZP_04677883.1| DNA polymerase I [Staphylococcus warneri L37603]
 gi|239597558|gb|EEQ80056.1| DNA polymerase I [Staphylococcus warneri L37603]
          Length = 292

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 145/263 (55%), Gaps = 23/263 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R F+AT L ++      G+P N I GF   ++  +     E   +H 
Sbjct: 3   NKVLLVDGMALLFRHFFATSLHNQFMYNSKGVPTNGIQGFVRHIFSAIH----EIQPTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I +  +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFEGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVTNYEADDVI 118

Query: 122 ATY--TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG----IP 175
            T   TY  + +   V II+ D+DL+Q ++    ++   K   I   + + ++     + 
Sbjct: 119 GTLAQTYSTDND---VYIITGDRDLLQCINENVEVWLIKKGFNIYNRYTLHRFNEEYELA 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR-REN 232
           P++++ ++A  GD+ D   G+ GIG KTA  L+Q+YG++E ++  I+A    Q+K+  +N
Sbjct: 176 PKQLIDIKAFMGDTADGYAGVKGIGEKTALKLIQQYGSVEEVINQIDALTPGQRKKINDN 235

Query: 233 ILEYAETARLSRKLVMLRTDVPI 255
           I E      LS++L  + T+VPI
Sbjct: 236 INE----LHLSKRLAEIHTNVPI 254


>gi|12045117|ref|NP_072928.1| 5'-3' exonuclease, putative [Mycoplasma genitalium G37]
 gi|2494183|sp|Q49406|EX53_MYCGE RecName: Full=5'-3' exonuclease
 gi|1045955|gb|AAC71483.1| 5'-3' exonuclease, putative [Mycoplasma genitalium G37]
 gi|166079091|gb|ABY79709.1| 5'-3' exonuclease, putative [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 291

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 139/260 (53%), Gaps = 23/260 (8%)

Query: 9   LVDGSSFIYRAFYAT--PLLSRKHDGLPVN-AIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L+DG+S  YRA++AT   +   K + LP N AI     M W L+    K ++  +  V F
Sbjct: 6   LIDGNSLAYRAYFATWKQVEYAKQNNLPFNNAIRTMLLMCWNLI----KANVYQYGIVSF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++IY  YK  R K P  LL Q+PL++ A    G    E  GFEADD+I +Y 
Sbjct: 62  DTKAPTFRDQIYEGYKQKRVKTPVELLVQIPLIKQALVYLGFLVCEKDGFEADDLIGSYA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK--------WGIPPE 177
            +  K+   V I S+D+D++QLV+  T ++  +K  K   E V+          +G+ P 
Sbjct: 122 NLFTKQEITVDIYSSDRDMLQLVNAFTNVFLCIKGTK---EMVMYNNENFKSLFYGLAPY 178

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKRRENILE 235
           ++V  + L GD+ DN+ GI GIG      LLQ+YG ++NI  N + +  + +K   N  E
Sbjct: 179 QVVEYKGLVGDNSDNLAGIKGIGPIKGIELLQQYGTIDNIYTNFNNLPNQLQKLLNNQKE 238

Query: 236 YAETARLSRKLVMLRTDVPI 255
            A+T      L  ++TD+ +
Sbjct: 239 IAKTFSF---LAKIKTDIEL 255


>gi|58583261|ref|YP_202277.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625095|ref|YP_452467.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575436|ref|YP_001912365.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427855|gb|AAW76892.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369035|dbj|BAE70193.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519888|gb|ACD57833.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 328

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 136/287 (47%), Gaps = 9/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G   NA+ GF   L  +L+    + I   F    D
Sbjct: 21  LYLVDASLYVFRAWHSIPDEFQDAQGWSTNAVHGFARFLLDVLERENPQHITIAFDEALD 80

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I +  +
Sbjct: 81  ---SCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLIGSALH 137

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
                G    I+S DKDL QL+      +D  + ++  ++ V  + G+   ++    AL 
Sbjct: 138 SVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWSMDGVKARHGVHAHQIADYLALC 197

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAETA 240
           GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + E  E A
Sbjct: 198 GDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLREQREHA 257

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            L R+L  +  D P+ +          +   L    ++L F  L  R
Sbjct: 258 LLWRQLTTIALDAPLALTETGFTRAHADAGMLTGLCESLRFGPLTRR 304


>gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus]
          Length = 1473

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 141/301 (46%), Gaps = 27/301 (8%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH   +L +T TGRL++ +PNLQN P       KIR AF +     L+ ADY Q+ELR+
Sbjct: 1170 RVHCSLNL-NTETGRLSARKPNLQNQPALEKDQYKIRAAFRAEEGNTLVVADYGQLELRL 1228

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVN-------------------IEKV 793
            LAHI     +   F+     H   A  +F      V+                   ++ V
Sbjct: 1229 LAHITDCKSMITAFKEGGCFHSRTAVGMFDHVKEAVDKGEVLLEWDYSKGEPPKPLVKDV 1288

Query: 794  SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
                RR AKT+NFSI YG +   L     +   EA D +K ++   P +  + ++     
Sbjct: 1289 FASERRQAKTLNFSIAYGKTGHGLFKDWGVTLKEAEDLVKAWYADRPEVKRWQKQVIQNA 1348

Query: 854  RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
            +  G+  T+ GR     +I S          RAAIN PIQG AAD+   AMI + +S   
Sbjct: 1349 KDTGFSRTLMGRYRKLPDITSNDRGKVGHGTRAAINTPIQGGAADVAMVAMIGIVRSPLL 1408

Query: 914  HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA--CLPKINLRVPLKVNIKVSNN 971
             KL  K+LLQ+HDE++ E PEE    A    V  M++    +    LRV L V+ K +  
Sbjct: 1409 KKLGWKLLLQVHDEVILEGPEESAKEALAETVRCMQQPWDGIGLRELRVDLLVDAKSAKT 1468

Query: 972  W 972
            W
Sbjct: 1469 W 1469


>gi|167957257|ref|ZP_02544331.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7c]
          Length = 265

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132
           R  I P YKA R   P     Q+P++     AFG P  E   +EADDI+ T + +AE+ G
Sbjct: 24  RLNILPTYKAGRKTPPSDFFNQIPILHDLLDAFGWPLYEFDDYEADDIMGTISLMAEQHG 83

Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVCLQALTG 187
               ++++D D++QLVSP T +Y  +K    +IE      +  K GI   + + L+AL G
Sbjct: 84  IETCLVTSDLDMLQLVSPLTKVY-AMKRGLSNIEEYNPSILENKLGIKVSQFLDLKALKG 142

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           DS DNIPG+PGIG KTA  LL+E+ +L+NI  N   IK    ++ +L   E+A +SRK+ 
Sbjct: 143 DSSDNIPGVPGIGDKTAVALLKEFESLDNIYKNIEIIKPAWAKK-LLAGKESAYISRKVG 201

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +  D P+   L+ + + + +  +L   L+ LEF  LI R+ T 
Sbjct: 202 QIWRDAPVDFDLKSMDIHNLDVVKLSDQLRKLEFNSLIKRLPTA 245


>gi|270264832|ref|ZP_06193096.1| exonuclease IX [Serratia odorifera 4Rx13]
 gi|270041130|gb|EFA14230.1| exonuclease IX [Serratia odorifera 4Rx13]
          Length = 252

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 90/263 (34%), Positives = 145/263 (55%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P          VNA     + L +L+Q+SR     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPC---------VNACQ---HALQQLIQHSR----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++I PDYKA R  +PE L  ++P +R A +A G+      G EADD+ 
Sbjct: 48  VFDEDDRSESWRHQILPDYKAGRSPMPENLQQEMPQLRQAFEALGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT T      G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P+++  
Sbjct: 108 ATLTAKVAGGGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVQQEFGVAPQQLAD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTA LLLQ+ G L+ +  +  ++ +K R + + ++ + A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGPKTAVLLLQQAGTLDGLYQDLEQVAEKWRGK-LQQHRDMAY 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +S+K+  LRTD+ +T  L+ L L
Sbjct: 227 VSKKVATLRTDLTLTGNLQQLRL 249


>gi|313637962|gb|EFS03268.1| DNA polymerase I [Listeria seeligeri FSL S4-171]
          Length = 190

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 106/194 (54%), Gaps = 9/194 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHATFKGYKGGRQKTPSELSEQFPFIRELLAAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + P +++
Sbjct: 117 TKKAEADGLEVAIITGDRDLTQLASDKTTVYITKKGIADMETNTPETLKEKYDLTPAQII 176

Query: 181 CLQALTGDSIDNIP 194
            ++ L GDS DNIP
Sbjct: 177 DMKGLMGDSSDNIP 190


>gi|304373271|ref|YP_003856480.1| DNA polymerase I [Mycoplasma hyorhinis HUB-1]
 gi|304309462|gb|ADM21942.1| DNA polymerase I [Mycoplasma hyorhinis HUB-1]
 gi|330723856|gb|AEC46226.1| 5'-3' exonuclease [Mycoplasma hyorhinis MCLD]
          Length = 296

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 150/270 (55%), Gaps = 14/270 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLL--SRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           N + LVDG+  ++++FYA+     S  H+  G   NAI  F   L+K++    KE   +H
Sbjct: 3   NRVLLVDGNLLLFKSFYASFNFKGSNMHNSAGQETNAIHTFFLSLFKVI----KELKPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD  + T R+ ++ +YK  R + P+ L  QL LV+       +   +   FEADD+
Sbjct: 59  IYIAFDKSSQTERHNLFAEYKQGRKQAPDSLFSQLNLVKELLSLANLKWSDDFEFEADDL 118

Query: 121 IAT--YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP 175
           IA+  YT++ + +   + + S+D+DL+QLVS  T + D  K+    I   ++  +   + 
Sbjct: 119 IASMNYTFLKQDQNSKIFVFSSDQDLLQLVSNQTYIVDKNKDNSFLIKTADNFFELHNLL 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+++   +AL+GDS DNI G+PGIG KTA  L+ ++ N+ENIL N  ++  K +++ ++E
Sbjct: 179 PKQIPDFKALSGDSSDNIKGVPGIGPKTAKSLISQFDNIENILANLDQLPSKMKQK-LIE 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE 265
             E   L +KL  L+T+      +  + L+
Sbjct: 238 NKENIILFKKLTTLKTNAKFDFNIADIALK 267


>gi|218672108|ref|ZP_03521777.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 106

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R A
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREA 104


>gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
 gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
          Length = 853

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 157/328 (47%), Gaps = 25/328 (7%)

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +I+ +++ ++ + + S++      ++N  T R+H  YS + T TGRL S +PN QN+P  
Sbjct: 511 LIEQMMKIQKYTTLISSHIVGRQKYLNPFTDRIHAGYS-SFTDTGRLNSFKPNGQNVPRP 569

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
            +   KIR  F   P K L   D+S  ELR++A  +    + ++F  + D+HR  A+ + 
Sbjct: 570 DNDDFKIRSFFAPKPGKILFFIDFSGFELRLIAWKSNDEVMIELFNTNGDMHRRTASALT 629

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISP------FRLATQLRIPRSEAADYIKRYFHRFP 840
           G     ++   R +AK  NF I YG +       F+    +R    E A  +      +P
Sbjct: 630 GKPESDITKIERTNAKAGNFGIAYGGTEYALQKTFKTDYGVRKTLDECAAIVNAVKTAYP 689

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +   +     R+NGY ETI+G +    +IN   S +R  +ER A N PIQGSAADI 
Sbjct: 690 RIPQMQRQAILDARENGYAETIYGYKRLLRDINGTNSKLRGSDERRAGNTPIQGSAADIM 749

Query: 901 RRAMISVHKSLEDHKLATK--------------MLLQIHDELVFEVPEEE--ITTASQII 944
           +     V+  + +     +              M+ QIHDE++FE+ ++   +  A   I
Sbjct: 750 KDCQNKVYDRIGEDTFKQRQGETDVLFTHGSIDMIAQIHDEMIFEMDDDPALVEKAGAWI 809

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
              ME+  LP  +  VP+     V  +W
Sbjct: 810 KAVMERPPLP--DFPVPVIAEASVGKDW 835


>gi|290998603|ref|XP_002681870.1| predicted protein [Naegleria gruberi]
 gi|284095495|gb|EFC49126.1| predicted protein [Naegleria gruberi]
          Length = 1648

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 139/439 (31%), Positives = 218/439 (49%), Gaps = 61/439 (13%)

Query: 579  VVSQMEITGIQIDQDLLKQVSA-------EISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
            V+S ME  GI+ +   +K  +        EI+++L SL+     L G+K ++S+   +  
Sbjct: 1185 VLSTMEHNGIRFNYHWIKHNTKLIDAKLDEITRDLNSLQI----LDGKKIDVSNNDHVAL 1240

Query: 632  ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
            +LF KLK   G + KT   K   + L+++    + I+K I E+R L  IK+ +  ++PN 
Sbjct: 1241 LLFDKLK-LKGTERKTN--KEILEKLKKLYPDKSYIMKQISEYRYLLNIKTHHIQNMPND 1297

Query: 692  IN--KRTQRVHTFYSLASTM--TGRLASLEPNLQNIP----IKTDLGQK------IRRAF 737
            I     TQ    F S   T   TGRL+   PNLQNIP    IK    QK      IR AF
Sbjct: 1298 IKYCPDTQEYRIFASQMQTTSATGRLSVKNPNLQNIPNDIDIKDPFSQKSIITLSIRSAF 1357

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS-LDIHRMVAAEIFGVNIEKVSPQ 796
            I      ++S DY  IELRILAH+++   L  +  N+  DI   +A   +    E+  P 
Sbjct: 1358 IPRNGYVMVSIDYKNIELRILAHLSQDRTLSDILSNTERDIFEEIARNFWNFRPEEPVPL 1417

Query: 797  MRRHAKTINFSIIYGISPFRLATQL--RIPRSEAADYIKR---------------YFHRF 839
              R   ++   IIYGIS    +  L  ++  SE  D++ R               +F ++
Sbjct: 1418 SHR---SLVKQIIYGISYCMGSETLSGKMFNSENEDFMLRPGEDRIEAAERYKQNFFEKY 1474

Query: 840  PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             G+ +Y +  +N + +  YVET + R+    +I S  SS R    RAA+N   QGSA+DI
Sbjct: 1475 QGLKQYKDFVENHLVEKHYVETSYSRKRFIHDICSDDSSKRAAARRAALNTVSQGSASDI 1534

Query: 900  TRRAMISVH---KSLEDHKLATKMLLQIHDELVFEVPEEEITT---ASQIIVHSMEKACL 953
             +  M+ ++   +     +    MLLQIHDEL+FEV E+ ++T    ++ I+ + +K  L
Sbjct: 1535 MKIVMLGIYSFMRHFNKKEERAYMLLQIHDELLFEVREDSLSTFIYCTKNIMQNTDKKLL 1594

Query: 954  PKINLRVPLKVNIKVSNNW 972
                  VPL V +++ ++W
Sbjct: 1595 ------VPLPVKVQIGDSW 1607


>gi|290473644|ref|YP_003466516.1| exonuclease IX, 5'-3' exonuclease [Xenorhabdus bovienii SS-2004]
 gi|289172949|emb|CBJ79720.1| exonuclease IX, 5'-3' exonuclease [Xenorhabdus bovienii SS-2004]
          Length = 251

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 121/213 (56%), Gaps = 3/213 (1%)

Query: 55  ESIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
            S  +H   +FD      ++R+++ PDYKA R  +P+ L  ++PL++ A  A G+     
Sbjct: 38  HSSPTHAVAVFDEDDRGHSWRHQLLPDYKAGRSAMPDDLQQEMPLIKQAFNALGVACWHA 97

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
           +G EADD+ AT        G  VTI+STDK   QL+SPT  + D  ++  +D+  V +++
Sbjct: 98  EGHEADDLAATLATKVTSTGHRVTIVSTDKGYCQLLSPTIQIRDYFQKRWLDLPFVEREF 157

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P ++     L+G S   IPG+ GIG KTAA+LLQ+ G+L+N L      +  K R  
Sbjct: 158 GVSPAQLPDYWGLSGISSSKIPGVQGIGPKTAAILLQQAGSLDN-LFQYLEAQPDKWRNK 216

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           +  + E A +SR++  LRTD+ +   L+ L L+
Sbjct: 217 LATHKEMAYISREVASLRTDLSLNGNLQQLRLD 249


>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 585

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 139/542 (25%), Positives = 258/542 (47%), Gaps = 67/542 (12%)

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           GHN+KYD   L +Y I      D M+ + ++   R      S+A  +  +T + I K  +
Sbjct: 74  GHNLKYDLKYLMKYDIHPYTTFDTMVGAQLIGLNR-----VSLASVYNHFTGESIDKKEQ 128

Query: 526 -SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--------IVEK--------LLHV 568
            S+    ++++SQ+  +A ++  V+  L+  L+ +L        I++K        L   
Sbjct: 129 FSNWSSKELTESQIF-YAAKDVEVLRLLYEKLKNELNKEPTIIEILQKSRVAKVFGLEST 187

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y  ++   +  ++++E TGI ID   ++ +  ++ K    L  N Y     + ++SSPK+
Sbjct: 188 YAIIEMGFVQELAKIEHTGIGIDTKEIETMKKQLQKKTQELAMNFY--IKYRIDISSPKK 245

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI---NCGDNPIIKNILEWRQLSKIKSTYA 685
           +G+ L   L        K       +  +E +   N     +I ++LE+R+L K++   +
Sbjct: 246 VGEFLENHLNISLPRTDKDNIITDDSVLIEHLDYENEKAKDVISSVLEFRKLHKLQEKLS 305

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           + L  + N    R+H  +     +TGR++S  PN+QNIP      +++R    +      
Sbjct: 306 EILEYNEN---NRIHPEFWQIGAVTGRMSSSRPNVQNIP------RELRSILKAKDGYVF 356

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           + AD+SQIELRI A   K   +  +     D+H+  A+ I G ++E ++ + R+ AK  N
Sbjct: 357 VIADFSQIELRIAAEYVKDEVMIDIINKGEDLHKFTASLITGKSLEDITKEERQRAKAAN 416

Query: 806 FSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           F +IYGIS   L+   R      +   EA  + + +F  F GI  + E+ K  ++  G +
Sbjct: 417 FGLIYGISEKSLSLYARNSYGIDMSIEEAKRFREVFFSTFQGIKAWHERIKKELKAKGEI 476

Query: 860 --ETIFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED--- 913
             +TI G+  I Y   +             A N PIQG+ A++ + +++   + L+    
Sbjct: 477 RLKTIGGKPMIAYTFTD-------------AANYPIQGTGAELLKLSVLIFSQELKRAFP 523

Query: 914 ---HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
              H++A  + L +HDE+V E  E+     S+++  SM+KA    +N  V ++  I +++
Sbjct: 524 SIFHEVANVVNL-VHDEIVVEAKEDYKEEVSKLLEKSMKKAGSILLN-NVKIETEIVINH 581

Query: 971 NW 972
            W
Sbjct: 582 RW 583


>gi|72388042|ref|XP_844445.1| mitochondrial DNA polymerase I protein A [Trypanosoma brucei
           TREU927]
 gi|62359390|gb|AAX79828.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei]
 gi|70800978|gb|AAZ10886.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei brucei strain 927/4 GUTat10.1]
          Length = 958

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 160/352 (45%), Gaps = 55/352 (15%)

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINK---RTQRVHTFYSLASTMTGRLASLEPNLQN 722
           PI +   E+   S I     +++PN  ++   +  ++H       T TGRL S+EPN+Q 
Sbjct: 593 PIEEGDGEFTDFS-ISEQGKEAIPNASDRHKAKWAKLHPNLVQEGTETGRLTSVEPNMQA 651

Query: 723 IPIKTDL--------------------------------GQK------------IRRAFI 738
           +P  T L                                G +            IRR   
Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           +P    L+S DY Q+ELR+LAH++  + L  V   S DIHR +A  IF      V+ + R
Sbjct: 712 APDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIF--RKTSVTGEER 769

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
             AK + F I+YG  P  LA Q+ +   +A      +   FP +  Y  +  +  R +G 
Sbjct: 770 SLAKKVVFGILYGAGPRGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRSDGS 829

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLA 917
           V T+ GR     +IN    + R+  ER A N  +QGSAAD+ +  MI+V +  L+ H   
Sbjct: 830 VRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIAVEREVLQPHAPD 889

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            ++LLQ+HDE++  VP   + +   I+  +M     P I+L VPL V  KV 
Sbjct: 890 VRLLLQVHDEIILSVPNHMLHS---IVPAAMHAFAHP-ISLLVPLLVTTKVG 937


>gi|24421685|gb|AAN60992.1| Unknown protein [Oryza sativa Japonica Group]
          Length = 443

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 137/255 (53%), Gaps = 29/255 (11%)

Query: 55  ESIASHFAVIFDYPAV-------------------TFRNEIYPDYKANRPKIPEMLLPQL 95
           E I SH AV+FD+  V                   TFR+ +YP YK+NR   P+ ++  +
Sbjct: 165 EFIPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPSYKSNRIPTPDTIVQGM 224

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
             ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L 
Sbjct: 225 QYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRIVSPDKDFFQILSPSLRLL 284

Query: 156 DTVKEE----KIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
                        +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ +
Sbjct: 285 RIAPRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITK 344

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLE--HLILEDC 267
           +G+LEN+L +   +++++ ++ ++  +E A L + L  LR+D+P   +P +   L+ +  
Sbjct: 345 FGSLENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSDLPSYMVPFKTSDLVFQKP 404

Query: 268 --NGPRLISFLKALE 280
             +G + I  L+ALE
Sbjct: 405 KDDGAKFIKLLRALE 419


>gi|261327618|emb|CBH10594.1| mitochondrial DNA polymerase I protein A,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 958

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 153/332 (46%), Gaps = 54/332 (16%)

Query: 686 DSLPNHINK---RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL------------- 729
           +++PN  ++   +  ++H       T TGRL S+EPN+Q +P  T L             
Sbjct: 612 EAIPNASDRHKAKWAKLHPNLVQEGTETGRLTSVEPNMQALPRSTQLVATHEKNNTNDAD 671

Query: 730 -------------------GQK------------IRRAFISPPTKKLISADYSQIELRIL 758
                              G +            IRR   +P    L+S DY Q+ELR+L
Sbjct: 672 SENGNYENINGDVNAADAGGNESDGPVQEKEVSFIRRCLGAPDGYSLVSLDYEQVELRVL 731

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++  + L  V   S DIHR +A  IF      V+ + R  AK + F I+YG  P  LA
Sbjct: 732 AHLSGDSALINVLTKSGDIHRSIAEIIF--RKTSVTGEERSLAKKVVFGILYGAGPRGLA 789

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            Q+ +   +A      +   FP +  Y  +  +  R +G V T+ GR     +IN    +
Sbjct: 790 QQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRSDGSVRTLSGRVRSIPDINDRVLT 849

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEI 937
            R+  ER A N  +QGSAAD+ +  MI+V +  L+ H    ++LLQ+HDE++  VP   +
Sbjct: 850 KRSHAERQAFNTVVQGSAADVMKLGMIAVEREVLQPHAPDVRLLLQVHDEIILSVPNHML 909

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            +   I+  +M     P I+L VPL V  KV 
Sbjct: 910 HS---IVPAAMHAFAHP-ISLLVPLLVTTKVG 937


>gi|302867440|ref|YP_003836077.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Micromonospora
           aurantiaca ATCC 27029]
 gi|315506150|ref|YP_004085037.1| 5'-3' exonuclease, n-terminal resolvase-like domain protein
           [Micromonospora sp. L5]
 gi|302570299|gb|ADL46501.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Micromonospora
           aurantiaca ATCC 27029]
 gi|315412769|gb|ADU10886.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Micromonospora sp. L5]
          Length = 307

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 91/272 (33%), Positives = 142/272 (52%), Gaps = 24/272 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M     + L+D  S  +RA++  P  + K  DG PVNA+ GF +ML +L++  R + +  
Sbjct: 1   MAHRQPILLIDSPSLYFRAYFGIPESAAKTGDGQPVNAVRGFLDMLAQLVRTRRPDRMIC 60

Query: 60  HFAVIFDY-PAVTFRNEIYPDYKANR--PK----IPEMLLPQLPLVRLATQAFGIPAIEI 112
            F    D+ PA  +R E+ P YKA+R  P+    +P+ L PQ+P++     A GIPA+  
Sbjct: 61  AFD--HDWRPA--WRVELLPSYKAHRVAPEGGEVVPDTLSPQVPMILEVLDALGIPAVGA 116

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLY---DTVKEEKIDIE 166
            G+EADD++ T   +A  +   V ++S D+DL QLV    P   LY      K +  D  
Sbjct: 117 TGYEADDVLGT---LAVTQPGPVEVVSGDRDLFQLVDDAHPVRLLYVGRGVAKLDDCDDA 173

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V  ++G+P ++     AL GD  D +PG+ G+G KTAA L+  YG L+ IL      + 
Sbjct: 174 AVRTRYGVPADRYADFAALRGDPSDGLPGVAGVGEKTAARLIDRYGGLDGILAALDDPRS 233

Query: 227 ---KKRRENILEYAETARLSRKLVMLRTDVPI 255
                 R  +    +   ++ K+V + TDVP+
Sbjct: 234 GFAPGLRAKLDAARDYLAVAPKVVRVATDVPL 265


>gi|302527225|ref|ZP_07279567.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302436120|gb|EFL07936.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 316

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 146/281 (51%), Gaps = 32/281 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+    L L+D +S  +R+FYA P      DG PVNA+ GF + + ++L + R   + + 
Sbjct: 1   MRVTGPLALLDSASLYFRSFYALPDSMTAPDGTPVNAVRGFTDTIARILTDRRPSRLVAC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPA 109
                D+    FR ++ P YKA+R            ++P+ L PQ+P++    +AFG   
Sbjct: 61  LDA--DWRP-KFRTDLLPSYKAHRVAVPGDGGADVEEVPDTLTPQVPIILEVLEAFGFAV 117

Query: 110 IEIQGFEADDIIATYTYIAEKEGFA-VTIISTDKDLMQLV----SPTTCLY---DTVKEE 161
            E  G+EADD+I     +A +E  A V +I+ D+DL QLV    +PT+ +Y      K E
Sbjct: 118 AEADGYEADDVIGA---LATREKDAPVEVITGDRDLFQLVREEPTPTSVVYVGKGWAKAE 174

Query: 162 KIDIEHVIKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
            +    + +K+G+P E        + AL GD  D +PG+ GIG KTAA L+ E+G+LE +
Sbjct: 175 VLGQREIAEKYGVPAEHAGPAYADMAALRGDPSDGLPGVAGIGEKTAAKLITEFGSLEEL 234

Query: 218 LINASRIKQK---KRRENILEYAETARLSRKLVMLRTDVPI 255
           +  AS    +   K R  + + A+   ++  +V +  D P+
Sbjct: 235 VAAASAGDSRVPLKTRLRLSDAADYLAVAPTVVRVAVDAPV 275


>gi|89902244|ref|YP_524715.1| 5'-3' exonuclease [Rhodoferax ferrireducens T118]
 gi|89346981|gb|ABD71184.1| 5'-3' exonuclease [Rhodoferax ferrireducens T118]
          Length = 270

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 122/208 (58%), Gaps = 8/208 (3%)

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H   +FD+   T+++++Y  Y+ANR  +P+ L   L  ++      G+  I I+G EAD
Sbjct: 49  THAVAVFDHGGRTWKHDLYDGYQANRKPMPQPLRDGLLTLKRELHDMGLHWIAIEGIEAD 108

Query: 119 DIIAT----YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
           D IA     +   + K+     I+STDKD +QL++   C+YD  KE   D  +V +K+G+
Sbjct: 109 DAIAALVEKWCKYSAKQAI---ILSTDKDFLQLLNDQVCIYDHFKEVWRDSAYVQEKFGV 165

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +M  L AL GD++D +PG+  +G KTAA LL+  GNL+ ++ NA ++  +    N+ 
Sbjct: 166 TPSQMGDLLALMGDAVDGVPGVDKVGRKTAATLLRINGNLDRLISNADKVGGQV-GANLR 224

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHL 262
           +  E ARLSR+LV  +TD P+ +  + L
Sbjct: 225 KGIEIARLSRQLVSFKTDRPLGLTWKML 252


>gi|39939162|ref|NP_950928.1| 5'-3' exonuclease [Onion yellows phytoplasma OY-M]
 gi|39722271|dbj|BAD04761.1| 5'-3' exonuclease [Onion yellows phytoplasma OY-M]
          Length = 322

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 15/229 (6%)

Query: 6   HLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           HL LVDG+S ++RA++AT     PLL  K  G+  NA+  F  M  K+L+ ++      +
Sbjct: 3   HLVLVDGNSLLFRAYHATASKYKPLLQNKK-GIYTNALLSFIRMFEKILEETK-----GY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    T R+++Y  YK  RP+ P  L+ Q+PL++      G+       +EADDI
Sbjct: 57  ILVAFDTHKPTKRHQLYDAYKQGRPETPSALISQIPLIKQYLDLIGVKYHAQDEYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDT-VKEEKI-DIEHVIKKWGIPP 176
           I T    A  +   V+I S+D+DL+QLV    T CL    ++E K      + +++G+  
Sbjct: 117 IGTLAKEASNQNKTVSIYSSDQDLLQLVDEKITVCLLKKGLREIKCYKPPTLFEEYGLKE 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
            +M+  ++L GD  DNI G+ GIG KTA  LLQEY +L+N++ N   IK
Sbjct: 177 YQMIDYKSLIGDPSDNIKGVLGIGPKTAQKLLQEYDSLDNLMQNLDNIK 225


>gi|302855051|ref|XP_002959026.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
 gi|300255592|gb|EFJ39887.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
          Length = 2736

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 123/207 (59%), Gaps = 7/207 (3%)

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIE 791
            +R AF++PP   +++ADY QIELR++AH +  + L  +  N + D   ++AAE   +++E
Sbjct: 2495 LRNAFVAPPGHVILTADYKQIELRLMAHFSGDSALCDLLRNPAQDPFTLLAAEWKRLSVE 2554

Query: 792  KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            +V+P++R  AK + + ++YG+    LA +L +   EAA+    +    PG+  ++++   
Sbjct: 2555 QVTPEVRVQAKRLAYGMLYGMGTSTLAAELGVSVHEAAELSDNFRRAIPGVDRWMKEVVE 2614

Query: 852  FVRQNGYVETIFGRRIHYDEINSPKS----SIRNINERAAINAPIQGSAADITRRAMISV 907
              R  GY+ T+ GRR ++  IN        S R  +ER AIN+  QGSAAD+ + AMIS+
Sbjct: 2615 QCRSCGYIVTLMGRRRYFPRINERSCKEARSQRAQSERQAINSVCQGSAADLVKAAMISL 2674

Query: 908  HKSLEDHKLA--TKMLLQIHDELVFEV 932
             + + +   A   +++L +HDELV EV
Sbjct: 2675 TRRIREEGWAGRARLVLMVHDELVLEV 2701



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 558  PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            PKL  E LL     ++ P++ +++ ME TG+ +   +L+     +   L  L    +  +
Sbjct: 2259 PKLQSEGLLRPLLEVEMPLVRILAAMEATGVALAPRVLRDQRGPLEARLRQLAHKAHVAA 2318

Query: 618  GEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQ---DLEQINCGDNPIIKNIL 672
            G  F+L+SPK + ++LF  L    P  A T   Q   + +     E      +PI++ +L
Sbjct: 2319 GMTFDLNSPKDVSEVLFQHLNLQPPPCAFTSHHQKHPSTKXEVLEELEESTHHPILRYLL 2378

Query: 673  EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            ++R L K+ + + ++L  +   R Q   ++   A T TGRL+  EPNLQ IP
Sbjct: 2379 DYRSLHKLLTGFVETL--YSTARGQLCGSWLHTA-TATGRLSMDEPNLQTIP 2427


>gi|221501798|gb|EEE27554.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 932

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 155/311 (49%), Gaps = 19/311 (6%)

Query: 673 EWRQLSKIKSTYADSL---PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           E  + S   + +AD+    P     +  RV T ++   T+TGRL+S  PNLQNIP   + 
Sbjct: 622 EGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQNIPKAVN- 680

Query: 730 GQKIRRAF---ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
               R AF   +   +  +++ADY+QIE+R+L      + L       +D++R +A+   
Sbjct: 681 ---CREAFRDDVQDGSAVVVAADYAQIEMRLLVREKSFSSLVHTRCAPIDLYREMASLYA 737

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
            +   +V+ ++R   K    ++IYG     +A Q+ I  + A+ +  ++   FP +  +I
Sbjct: 738 EIPSHEVTKELRDKVKVTCLALIYGSGTCTIARQMNISLAAASAFRSKFLFVFPDVSHFI 797

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
                  R++G+V T+ GRR +  E  S  S +R + ER ++N+ IQGSA+DI + AM+ 
Sbjct: 798 RSIIAKGREDGFVTTLTGRRRYVPEAKSNSSHVRALGERLSVNSCIQGSASDIMKIAMMR 857

Query: 907 VHKSL-----EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           +   L         L  ++LL +HDELV       +   S++I  S+ +     + + VP
Sbjct: 858 LQAELLSFPWAPDALPPRLLLSVHDELVLHCSLSHLAPLSKMIKSSLTE----NMPVDVP 913

Query: 962 LKVNIKVSNNW 972
           L V+I     W
Sbjct: 914 LDVSISAGPTW 924



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           LLR   +V+ LL      + PM  +++ +++TGI I     +Q+ + +   L+++E+ + 
Sbjct: 434 LLRTHQLVQPLL----TQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVN 489

Query: 615 DLSGEK-FNLSSPKQLGDILFTKLKFP--------SGAKTKTGQWKT----TAQDLEQIN 661
            ++G     ++SP QL  +LF  L  P         G++ +    KT    TA+++ Q  
Sbjct: 490 RVAGTSCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEI 549

Query: 662 CGDNPIIKNILEWRQLSKIKSTY 684
              +P++  I  +R L+K++STY
Sbjct: 550 VDLHPVVPLIQNFRSLAKLRSTY 572


>gi|221480621|gb|EEE19073.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 935

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 155/311 (49%), Gaps = 19/311 (6%)

Query: 673 EWRQLSKIKSTYADSL---PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           E  + S   + +AD+    P     +  RV T ++   T+TGRL+S  PNLQNIP   + 
Sbjct: 625 EGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQNIPKAVN- 683

Query: 730 GQKIRRAF---ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
               R AF   +   +  +++ADY+QIE+R+L      + L       +D++R +A+   
Sbjct: 684 ---CREAFRDDVQDGSAVVVAADYAQIEMRLLVGEKSFSSLVHTRCAPIDLYREMASLYA 740

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
            +   +V+ ++R   K    ++IYG     +A Q+ I  + A+ +  ++   FP +  +I
Sbjct: 741 EIPSHEVTKELRDKVKVTCLALIYGSGTCTIARQMNISLAAASAFRSKFLFVFPDVSHFI 800

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
                  R++G+V T+ GRR +  E  S  S +R + ER ++N+ IQGSA+DI + AM+ 
Sbjct: 801 RSIIAKGREDGFVTTLTGRRRYVPEAKSNSSHVRALGERLSVNSCIQGSASDIMKIAMMR 860

Query: 907 VHKSL-----EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           +   L         L  ++LL +HDELV       +   S++I  S+ +     + + VP
Sbjct: 861 LQAELLSFPWAPDALPPRLLLSVHDELVLHCSLSHLAPLSKMIKSSLTE----NMPVDVP 916

Query: 962 LKVNIKVSNNW 972
           L V+I     W
Sbjct: 917 LDVSISAGPTW 927



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           LLR   +V+ LL      + PM  +++ +++TGI I     +Q+ + +   L+++E+ + 
Sbjct: 437 LLRTHQLVQPLL----TQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVN 492

Query: 615 DLSGEK-FNLSSPKQLGDILFTKLKFP--------SGAKTKTGQWKT----TAQDLEQIN 661
            ++G     ++SP QL  +LF  L  P         G++ +    KT    TA+++ Q  
Sbjct: 493 RVAGTSCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEI 552

Query: 662 CGDNPIIKNILEWRQLSKIKSTY 684
              +P++  I  +R L+K++STY
Sbjct: 553 VDLHPVVPLIQNFRSLAKLRSTY 575


>gi|237845437|ref|XP_002372016.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211969680|gb|EEB04876.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 938

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 155/311 (49%), Gaps = 19/311 (6%)

Query: 673 EWRQLSKIKSTYADSL---PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           E  + S   + +AD+    P     +  RV T ++   T+TGRL+S  PNLQNIP   + 
Sbjct: 628 EGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQNIPKAVN- 686

Query: 730 GQKIRRAF---ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
               R AF   +   +  +++ADY+QIE+R+L      + L       +D++R +A+   
Sbjct: 687 ---CREAFRDDVQDGSAVVVAADYAQIEMRLLVGEKSFSSLVHTRCAPIDLYREMASLYA 743

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
            +   +V+ ++R   K    ++IYG     +A Q+ I  + A+ +  ++   FP +  +I
Sbjct: 744 EIPSHEVTKELRDKVKVTCLALIYGSGTCTIARQMNISLAAASAFRSKFLFVFPDVSHFI 803

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
                  R++G+V T+ GRR +  E  S  S +R + ER ++N+ IQGSA+DI + AM+ 
Sbjct: 804 RSIIAKGREDGFVTTLTGRRRYVPEAKSNSSHVRALGERLSVNSCIQGSASDIMKIAMMR 863

Query: 907 VHKSL-----EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           +   L         L  ++LL +HDELV       +   S++I  S+ +     + + VP
Sbjct: 864 LQAELLSFPWAPDALPPRLLLSVHDELVLHCSLSHLAPLSKMIKSSLTE----NMPVDVP 919

Query: 962 LKVNIKVSNNW 972
           L V+I     W
Sbjct: 920 LDVSISAGPTW 930



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           LLR   +V+ LL      + PM  +++ +++TGI I     +Q+ + +   L+++E+ + 
Sbjct: 440 LLRTHQLVQPLL----TQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVN 495

Query: 615 DLSGEK-FNLSSPKQLGDILFTKLKFP--------SGAKTKTGQWKT----TAQDLEQIN 661
            ++G     ++SP QL  +LF  L  P         G++ +    KT    TA+++ Q  
Sbjct: 496 RVAGTSCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEI 555

Query: 662 CGDNPIIKNILEWRQLSKIKSTY 684
              +P++  I  +R L+K++STY
Sbjct: 556 VDLHPVVPLIQNFRSLAKLRSTY 578


>gi|149182897|ref|ZP_01861356.1| hypothetical protein BSG1_01425 [Bacillus sp. SG-1]
 gi|148849400|gb|EDL63591.1| hypothetical protein BSG1_01425 [Bacillus sp. SG-1]
          Length = 307

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 141/276 (51%), Gaps = 33/276 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           ++ NHL L+DG + ++R+F+AT +  +      G P N + GF   L   +++       
Sbjct: 10  KQNNHLLLIDGMALLFRSFFATAVSGQFMINSKGQPTNGVQGFMKHLLMAVEHIN----P 65

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV +D  + TFRNEIY DYKANR   P  L+PQ  L +   + F +  + + GFEAD
Sbjct: 66  THTAVCWDMGSSTFRNEIYSDYKANRNAPPVELIPQFDLAKEVAEGFALYNLGMAGFEAD 125

Query: 119 DIIATYTYIAEKEGFAVTIIST------------DKDLMQLVSPTTCLY--DTVKEEKID 164
           D I T    A K+   V+I+S             D  L++        Y  D   EEK  
Sbjct: 126 DCIGTIAKSAPKDT-KVSILSGDQDLLQLLDDNIDVVLLKKGFGNYLTYSKDFFMEEK-- 182

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
                   G+ PE+ + ++AL GD+ D  PG+ GIG KTA  L+QE+ +++ IL ++  +
Sbjct: 183 --------GLTPEQFIDVKALMGDTSDGYPGVKGIGEKTAVKLIQEHLHIQGIL-DSLHL 233

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
               +R+ I    +   LSR+L  ++ DVP+   +E
Sbjct: 234 LTPSQRKKIESDLDMLHLSRQLAEIKCDVPLEFNME 269


>gi|190572893|ref|YP_001970738.1| putative exodeoxyribonuclease [Stenotrophomonas maltophilia K279a]
 gi|190010815|emb|CAQ44424.1| putative exodeoxyribonuclease [Stenotrophomonas maltophilia K279a]
          Length = 311

 Score =  135 bits (339), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+  R   IA  F    D
Sbjct: 10  LYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPRHIAIAFDEALD 69

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ +YP YKANR   PE L  Q    +    A G+  +    +EADD+I +  +
Sbjct: 70  ---SGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHEYEADDLIGSALH 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +       V IIS DKDL QL+      +D  + ++ ++  V  + G+   ++    AL 
Sbjct: 127 VHRGSHRGV-IISADKDLSQLLLDHDEQWDYARNQRWNVAGVKARHGVHAHQIADYLALC 185

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAETA 240
           GD++DNIPGI G+G K+AA+LL  +G+++ +      +   + R        + E  E A
Sbjct: 186 GDAVDNIPGISGVGSKSAAVLLAHFGSMDALYERLDEVPFLRLRGAAQMAVRLREQREHA 245

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           +L R+L  +  D P+      L+ +  +   L    + L F  +  R
Sbjct: 246 QLWRQLTTIALDAPLEGSQPGLLRQTADPELLGGLCQTLRFGPMTRR 292


>gi|325842751|ref|ZP_08167786.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489551|gb|EGC91916.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 330

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 159/314 (50%), Gaps = 29/314 (9%)

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I+  I+ +++ +K+ +TY D L N ++K   R+   ++L  T T R++  +PN Q+IP  
Sbjct: 40  IVDEIVRYKKYNKLVTTYGDKLKNQLSKDG-RLRGHWNLIGTKTSRMSCQKPNFQSIP-- 96

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
               +++++ F +      I  DYS IELRILA I     L   F    D+H   A  I 
Sbjct: 97  ----KEMKKYFQAEEENVFIIMDYSTIELRILAEITNCQKLIDAFNAGADLHVETAKAI- 151

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFP 840
            +N E +S   R+  K +NF +IYG++PF L  ++       I   +A ++I  YF  +P
Sbjct: 152 -LNQESISDSERKLGKVVNFGLIYGLTPFGLKEKINAIPGFNISEYKAEEFIANYFKMYP 210

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + +Y ++     +Q   + T  G   ++D  N     +  +  R   N  +Q S A+  
Sbjct: 211 EVAKYQQQ-----QQYSDIITTLGGS-YWDNTN----GLDRLKPRQRYNYAVQASCAEGL 260

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + ++    K  +D     K++  IHDE++ EVPE E  TA + +  +M    + K+  ++
Sbjct: 261 KESLALFCKLKQDK---WKLVSAIHDEIIIEVPETEALTAKECLKQAMIDG-MGKLVKKI 316

Query: 961 PLKVNIKVSNNWQE 974
           P++V++ +S  W++
Sbjct: 317 PIEVSVNISKTWKK 330


>gi|261749394|ref|YP_003257079.1| DNA polymerase I [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497486|gb|ACX83936.1| DNA polymerase I [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 305

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 157/292 (53%), Gaps = 17/292 (5%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           LFL+D  + +Y+ +YA    PL + +  G+  + I  F       L N+  E   S+ A 
Sbjct: 6   LFLIDTYTILYQGYYAYIKNPLFTSQ--GINTSPIIHFTY----FLINTLNEEKPSYMAA 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-GFEADDIIA 122
            FD    TFR + YP YKA+R K P  +   +P V    ++F I +   + G+EADD+I 
Sbjct: 60  FFDTSRKTFRKKEYPKYKAHRKKTPRDISIAMPYVVNILKSFRISSFYAKDGYEADDLIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWG-IPPE 177
           T    AEK+G+ + II+ DKD  QLV+    +Y        ++ + IE + KK+G I P+
Sbjct: 120 TIAKKAEKKGYMIYIITLDKDFSQLVTKNIQIYRPPFKGNPKKILGIEEIKKKFGVIEPK 179

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L ++ GDS DNIPG+PGIG K A   +Q+YG+LE  L N++     K ++NI +  
Sbjct: 180 QVIDLWSMMGDSSDNIPGLPGIGEKYARKFIQKYGSLEKFL-NSTHDLSGKIKKNIEKNK 238

Query: 238 ETARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +   LS++LV + T+VP      E   ++  N   +      LEF +L+ + 
Sbjct: 239 KLGLLSKRLVTIVTNVPFFYFQEEKFSVKKPNWNSIKKIFCELEFQRLLKKT 290


>gi|194364475|ref|YP_002027085.1| 5'-3' exonuclease [Stenotrophomonas maltophilia R551-3]
 gi|194347279|gb|ACF50402.1| 5'-3' exonuclease [Stenotrophomonas maltophilia R551-3]
          Length = 316

 Score =  134 bits (338), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 138/287 (48%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+  R   IA  F    D
Sbjct: 10  LYLVDASIYVFRAWHSLPDEFQDSQGWPTNAVHGFARFLLDLLERERPRHIAIAFDEALD 69

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ +YP YKANR   PE L  Q    +    A G+  +    +EADD+I +  +
Sbjct: 70  ---SGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHEYEADDLIGSALH 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +       V IIS DKDL QL+      +D  + ++ D+  V  + G+   ++    AL 
Sbjct: 127 VHRGSHRGV-IISADKDLSQLLVDHDEQWDYARNQRWDVAGVKARHGVHAHQIADYLALC 185

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAETA 240
           GD++DNIPG+ G+G K+AA+LL  +G+++ +      +   + R        + E  E A
Sbjct: 186 GDAVDNIPGVSGVGSKSAAVLLAHFGSMDVLYERLDEVPFLRLRGAAQMAVRLREQREHA 245

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            L R+L  +  D P+      L+ +  +   L    + L F     R
Sbjct: 246 LLWRQLTTIALDAPLEGSQPGLLRQSADPELLAGLCQTLRFGPTTRR 292


>gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
 gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
          Length = 808

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 156/323 (48%), Gaps = 30/323 (9%)

Query: 676 QLSKIKSTYADSLPNHINKR-------TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           QL KI+  Y   L +HI  R       + R+H  YS   T TGRL S  PN QN+P   +
Sbjct: 481 QLKKIQK-YTTLLSSHIIGREKYLNFMSGRIHAGYS-PFTETGRLNSFNPNGQNVPRPDN 538

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
              KIR  F+  P K L   D+S  ELR++A  +    + ++F    D+HR  A+ + G 
Sbjct: 539 DEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGK 598

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISP------FRLATQLRIPRSEAA---DYIKRYFHRF 839
           +  ++  + R  AK  NF I YG +       F+    +R    E A   + +K  + R 
Sbjct: 599 SEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRI 658

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P   EY  K     R+ GYV+TI+G       INS     R   ER A N P+QGSAADI
Sbjct: 659 P---EYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADI 715

Query: 900 TRRAMISVHKSLEDHK-----LATKMLLQIHDELVFEVPEE-EITTA-SQIIVHSMEKAC 952
            ++    +++S+   +      +  M+ QIHDE++FE+ ++ EI  A  + I   ME+  
Sbjct: 716 MKKVQNEIYESIGKQEGVLSHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPP 775

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
           +P     VP++    V   W E+
Sbjct: 776 VP--GFPVPIEAEGSVGYRWGEK 796


>gi|157372037|ref|YP_001480026.1| exonuclease IX [Serratia proteamaculans 568]
 gi|166918966|sp|A8GIF8|XNI_SERP5 RecName: Full=Protein Xni
 gi|157323801|gb|ABV42898.1| 5'-3' exonuclease [Serratia proteamaculans 568]
          Length = 251

 Score =  134 bits (338), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 147/263 (55%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P          VNA     + L +L+Q+SR     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPC---------VNACQ---HALQQLIQHSR----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++I PDYKA R  +P+ L  ++P +R A ++ G+      G EADD+ 
Sbjct: 48  VFDEDDRSESWRHQILPDYKAGRSPMPDNLQQEMPQLRQAFESLGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT T      G  VTI+STDK   QL++P+  + D  ++  +D+  V +++G+ P+++  
Sbjct: 108 ATLTAKVAGGGHQVTIVSTDKGYCQLLAPSVQIRDYFQKRWLDMPFVQQEFGVSPQQLSD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTA LLLQ+ G+L+ +  +  ++ +K R + + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGPKTAVLLLQQAGSLDGLYQDLEQVPEKWRGK-LEQHREMAY 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +S+++  LRTD+ +T  L+ L L
Sbjct: 227 VSKRVATLRTDLALTGNLQQLRL 249


>gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51]
 gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51]
          Length = 802

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 153/320 (47%), Gaps = 24/320 (7%)

Query: 676 QLSKIKSTYADSLPNHINKR-------TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           QL KI+  Y   L +HI  R       + R+H  YS   T TGRL S  PN QN+P   +
Sbjct: 475 QLKKIQK-YTTLLSSHIIGREKYLNFMSGRIHAGYS-PFTETGRLNSFNPNGQNVPRPDN 532

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
              KIR  F+  P K L   D+S  ELR++A  +    + ++F    D+HR  A+ + G 
Sbjct: 533 DEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGK 592

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISP------FRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +  ++  + R  AK  NF I YG +       F+    +R    E A  +      +  I
Sbjct: 593 SEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRI 652

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            EY  K     R+ GYV+TI+G       INS     R   ER A N P+QGSAADI ++
Sbjct: 653 PEYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIMKK 712

Query: 903 AMISVHKSLEDHK-----LATKMLLQIHDELVFEVPEE-EITTA-SQIIVHSMEKACLPK 955
               +++S+   +      +  M+ QIHDE++FE+ ++ EI  A  + I   ME+  +P 
Sbjct: 713 VQNEIYESIGKQEGVLSHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVP- 771

Query: 956 INLRVPLKVNIKVSNNWQEE 975
               VP++    V   W E+
Sbjct: 772 -GFPVPIEAEGSVGYRWGEK 790


>gi|260827865|ref|XP_002608884.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
 gi|229294238|gb|EEN64894.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
          Length = 196

 Score =  134 bits (338), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 2/177 (1%)

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R   K + +SI+YG+ P +LAT L +  +E+  +I  +  RFPG+  +  K K   +  G
Sbjct: 13  RERTKRVVYSIMYGVGPEKLATYLNVSAAESKGFISSFLRRFPGVSRFTHKCKEECKAKG 72

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           +V TI  R      I SP   +R+  ER A+N  +QGSAADI + AMI V K L +  L 
Sbjct: 73  HVRTILKRWRLIPNIKSPNFFLRSQAERQAVNFVVQGSAADICKLAMILVGKRLAEEGLK 132

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL--PKINLRVPLKVNIKVSNNW 972
            K+L+Q+HDELVFEV +EE+ +   ++   M+   L   +I L+VPL+V++ V  +W
Sbjct: 133 AKLLIQLHDELVFEVADEEVDSVKGVVRDIMQSDALLGGQIKLQVPLRVSVSVGKSW 189


>gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
 gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
          Length = 808

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 156/323 (48%), Gaps = 30/323 (9%)

Query: 676 QLSKIKSTYADSLPNHINKR-------TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           QL KI+  Y   L +HI  R       + R+H  YS   T TGRL S  PN QN+P   +
Sbjct: 481 QLKKIQK-YTTLLSSHIIGREKYLNFMSGRIHAGYS-PFTETGRLNSFNPNGQNVPRPDN 538

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
              KIR  F+  P K L   D+S  ELR++A  +    + ++F    D+HR  A+ + G 
Sbjct: 539 DEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGK 598

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISP------FRLATQLRIPRSEAA---DYIKRYFHRF 839
           +  ++  + R  AK  NF I YG +       F+    +R    E A   + +K  + R 
Sbjct: 599 SEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRI 658

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P   EY  K     R+ GYV+TI+G       INS     R   ER A N P+QGSAADI
Sbjct: 659 P---EYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADI 715

Query: 900 TRRAMISVHKSLEDHK-----LATKMLLQIHDELVFEVPEE-EITTA-SQIIVHSMEKAC 952
            ++    +++S+   +      +  M+ QIHDE++FE+ ++ EI  A  + I   ME+  
Sbjct: 716 MKKVQNEIYESIGKQEGVLAHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPP 775

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
           +P     VP++    V   W E+
Sbjct: 776 VP--GFPVPIEAEGSVGYRWGEK 796


>gi|328881266|emb|CCA54505.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 335

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 143/274 (52%), Gaps = 34/274 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ + + + + +    
Sbjct: 33  RLMLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFITRLVQDHQPDDLVACWD--- 89

Query: 66  DYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           D     +R ++ P YKA+R            +IP+ L PQ+P++     A GI  I   G
Sbjct: 90  DDWRPQWRVDLIPSYKAHRVAVVTETGPDEEEIPDTLSPQVPVIEEVLAALGIARIGAAG 149

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---------PTTCLYDTVKEEKIDI 165
           +EADD+I T   +A +    V I++ D+DL QLV          P   + D    + +D 
Sbjct: 150 YEADDVIGT---LAGRARGPVDIVTGDRDLFQLVDDARSVRVLYPRKGVGDC---DLVDA 203

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA---- 221
           + ++ K+G+ P++     AL GD+ D +PG+ GIG KTAA L+ EYG+L  +   A    
Sbjct: 204 DMIVSKYGVRPDQYADFAALRGDASDGLPGVKGIGEKTAAQLITEYGDLAGVRAAAEDRT 263

Query: 222 SRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           S++   KRR  I+E A    ++  +V +  DVP+
Sbjct: 264 SKLTPAKRR-GIVEAAAYLDVAPTVVKVAGDVPL 296


>gi|262202398|ref|YP_003273606.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Gordonia bronchialis DSM 43247]
 gi|262085745|gb|ACY21713.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Gordonia bronchialis DSM 43247]
          Length = 347

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 141/282 (50%), Gaps = 41/282 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+FYA P      DG PVNA+ GF + +  L+   R     +   V 
Sbjct: 19  DSLMLLDGASLWFRSFYALPEKMTAPDGRPVNAVRGFLDTIANLVTRERP----TRLVVC 74

Query: 65  FDY---PAVTFRNEIYPDYKANR----------------PKIPEMLLPQLPLVRLATQAF 105
            D    P  +FR ++ P YKA+R                 ++P+ L PQ+ ++    +  
Sbjct: 75  LDLDWRP--SFRTDLIPSYKAHRVATPAASGTGDSEIDVEEVPDTLTPQVDMIMRVLECA 132

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTV 158
           GI      G EADD+I T  Y  E+    V ++S D+DL+Q+V+    P   LY      
Sbjct: 133 GIARSGAVGCEADDVIGTLAY--EEAQDPVVVVSGDRDLLQVVADDPVPVRVLYVGRGLA 190

Query: 159 KEEKIDIEHVIKKWGIPPEKMVCLQA----LTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           K E +  + V  ++G+P ++     A    L GD  D +PG+PG+G KTAA L+ E+G+L
Sbjct: 191 KAEMMGPDEVAARYGVPADRAGMAYAEMSMLRGDPSDGLPGVPGVGEKTAATLISEFGSL 250

Query: 215 ENILINASRIKQK---KRRENILEYAETARLSRKLVMLRTDV 253
           +N+   A+        + R+ IL  A+    +R +V++RTD 
Sbjct: 251 DNLEAAAADPSSSVPTRARKAILASADYLDAARTVVLVRTDA 292


>gi|238480047|ref|NP_001154673.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|332645362|gb|AEE78883.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 365

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 128/237 (54%), Gaps = 17/237 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK-------ESIAS 59
           + L+DG+S IYRA+Y   LL+R + G   +A     N  W L   S         + + S
Sbjct: 119 VMLIDGTSIIYRAYYK--LLARLNHGHLAHADG---NADWVLTIFSSLSLLIDVLKFLPS 173

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD+  + FR+ +YP YK+NRP  P+ ++  L  ++ + +A  I  IE+ G EADD
Sbjct: 174 HVAVVFDHDGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADD 233

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-I 174
           +I T    +   GF V ++S DKD  Q++SP+  L              +E   KK+G +
Sbjct: 234 VIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNL 293

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            P + V + AL GD  DNIPG+ GIG   A  L+  +G LEN+L +   IK+ K +E
Sbjct: 294 EPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLLQSVDEIKEGKIKE 350


>gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein A [Trypanosoma brucei]
          Length = 958

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 159/352 (45%), Gaps = 55/352 (15%)

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINK---RTQRVHTFYSLASTMTGRLASLEPNLQN 722
           PI +   E+   S I     +++PN  ++   +  ++H       T TGRL S+EPN+Q 
Sbjct: 593 PIEEGDGEFTDFS-ISEQGKEAIPNASDRHKAKWAKLHPNLVQEGTETGRLTSVEPNMQA 651

Query: 723 IPIKTDL--------------------------------GQK------------IRRAFI 738
           +P  T L                                G +            IRR   
Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
            P    L+S DY Q+ELR+LAH++  + L  V   S DIHR +A  IF      V+ + R
Sbjct: 712 VPDGYSLVSLDYEQVELRVLAHLSGDSALISVLTKSGDIHRSIAEIIF--RKTSVTGEER 769

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
             AK + F I+YG  P  LA Q+ +   +A      +   FP +  Y  +  +  R +G 
Sbjct: 770 SLAKKVVFGILYGAGPRGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRSDGS 829

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLA 917
           V T+ GR     +IN    + R+  ER A N  +QGSAAD+ +  MI+V +  L+ H   
Sbjct: 830 VRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIAVEREVLQPHAPD 889

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            ++LLQ+HDE++  VP   + +   I+  +M     P I+L VPL V  KV 
Sbjct: 890 VRLLLQVHDEIILSVPNHMLHS---IVPAAMHAFAHP-ISLLVPLLVTTKVG 937


>gi|313678741|ref|YP_004056481.1| 5'-3' exonuclease family protein [Mycoplasma bovis PG45]
 gi|312950734|gb|ADR25329.1| 5'-3' exonuclease family protein [Mycoplasma bovis PG45]
          Length = 305

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 141/276 (51%), Gaps = 23/276 (8%)

Query: 1   MQKENHL-FLVDGSSFIYRAFYAT-------PLLSRKHDGLPVNAIAGFCNMLWKLLQNS 52
           M  +N+L  LVDG+  ++++FYA+        +L  K DG   N +  F   L+KL++  
Sbjct: 1   MNSDNNLMLLVDGNFLVFQSFYASYNKYKPNSVLVAK-DGTTTNGVHVFFQTLFKLMRLY 59

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
                 +H  + FD    T R+E+Y +YKA R K PE++  Q  L +    A  I   E 
Sbjct: 60  N----PTHMFIAFDAKGKTKRHEVYNNYKAGREKAPEIIFEQFDLTKKILSAMNIKWFEK 115

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK------EEKID-I 165
            G+EADD+IAT T       F   I S DKDL+QLV+   C+   V+      E  ++ I
Sbjct: 116 VGYEADDLIATIT--KHNNQFKNYIYSKDKDLLQLVNENNCIIKVVRNPGNFTEYSLETI 173

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
              +  +GI P ++   + L GD+ D + G+ GIG K A  LL E+G+LE I  N  +I 
Sbjct: 174 NEFVDIYGINPNQIPDYKGLAGDTSDRLKGVAGIGPKKAVSLLNEFGSLEAIYENIGKI- 232

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
             K +E +    E+A   +KL +L  DV +   +++
Sbjct: 233 SGKTKEYLENDYESAHFCKKLAILNPDVEMDTDIDN 268


>gi|303285890|ref|XP_003062235.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456646|gb|EEH53947.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 565

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 161/380 (42%), Gaps = 104/380 (27%)

Query: 5   NHLFLVDGSSFIYRAFYA----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            H+ LVDG S ++RAFY      PLL+   + L V  +    + +  +L     E   SH
Sbjct: 166 GHVALVDGMSLVFRAFYGWRNREPLLATNGEDLSV--MYSVTHAILAIL-----ELAPSH 218

Query: 61  FAVIFDYPAVTFR--------------NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
            AV FD    TFR              +E++ DYKANRP  P  L  Q+P V  A +  G
Sbjct: 219 VAVCFDAKGKTFRRVLYTGSHTTPSAWHEMFTDYKANRPPTPPELKEQIPKVVEAVRRMG 278

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVK 159
           +P + I G EADDII T    + + G  VTI+S DKD  QL+ P           YD  K
Sbjct: 279 VPVLTISGVEADDIIGTIARRSVEAGLHVTIVSPDKDFFQLLGPRVRQLRPNGKNYDAAK 338

Query: 160 EEKI------------DIEH--VIKKWGIP--------------PEKMVCLQALTGDSID 191
           E               D  H  V  K  +P              P + V + A+ GD+ D
Sbjct: 339 EAAARDGEDAASDGFGDPTHRNVTGKGLVPFTERDFRAEFSDLDPAQFVDVLAMVGDASD 398

Query: 192 N------------------------------IPGIPGIGYKTAALLLQEYGNLENILINA 221
           N                              +PG+ GIG KTA  LL EYGN+E  + NA
Sbjct: 399 NVPGAVPRFQSRHTSTPFNSASDAFQLHPDIVPGVEGIGPKTAPKLLSEYGNIEGAIANA 458

Query: 222 SRIKQKKRRENILE--YAETARLSRKLVMLRT--DVPI----TIPLEHLILED-----CN 268
             IK K+ RE++     A +A L R LV +RT   VP      +P+  L + D      +
Sbjct: 459 GGIKNKRARESLASERGAASAYLCRSLVKIRTRLSVPTLNDPALPIADLAIADKVPNPAD 518

Query: 269 GPRLIS-FLKALEFTKLINR 287
           G   +S +  A+E   + +R
Sbjct: 519 GGLAVSDYFDAMELGTVASR 538


>gi|183983075|ref|YP_001851366.1| 5'-3' exonuclease [Mycobacterium marinum M]
 gi|183176401|gb|ACC41511.1| 5'-3' exonuclease [Mycobacterium marinum M]
          Length = 318

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 89/277 (32%), Positives = 140/277 (50%), Gaps = 33/277 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+++  P      DG P+NA+ GF + +  ++   R     S  AV  D
Sbjct: 5   LLLLDGASMWFRSYFGVPSSITAPDGRPINAVRGFIDSMAVVITQHR----PSRLAVCLD 60

Query: 67  YP-AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 FR ++ P YKA+R             ++P+ L PQ+ ++     AFGIPA    
Sbjct: 61  LDWRPQFRVDLIPSYKAHRVAEPEPAGQPDVEEVPDELTPQVDMIMELLDAFGIPAAGAA 120

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIE 166
           GFEADD++ T    A+++   V ++S D+DL+Q+V+    P   LY      K       
Sbjct: 121 GFEADDVLGTLA--AQEQRDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLSKATLFGPS 178

Query: 167 HVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V +++G+P E+       L  L GD  D +PG+PG+G KTAA LL ++G+L+ I+  A 
Sbjct: 179 EVAERYGLPAERAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLDRIVAAAH 238

Query: 223 RIKQ---KKRRENILEYAETARLSRKLVMLRTDVPIT 256
             K    K  R  +L  +     +R +V + TD P+T
Sbjct: 239 DPKSTMAKGVRTKLLAASAYIDAARSVVRVATDAPVT 275


>gi|118617832|ref|YP_906164.1| 5'-3' exonuclease [Mycobacterium ulcerans Agy99]
 gi|118569942|gb|ABL04693.1| 5'-3' exonuclease [Mycobacterium ulcerans Agy99]
          Length = 318

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 89/277 (32%), Positives = 140/277 (50%), Gaps = 33/277 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+++  P      DG P+NA+ GF + +  ++   R     S  AV  D
Sbjct: 5   LLLLDGASMWFRSYFGVPSSITAPDGRPINAVRGFIDSMAVVITQHR----PSRLAVCLD 60

Query: 67  YP-AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 FR ++ P YKA+R             ++P+ L PQ+ ++     AFGIPA    
Sbjct: 61  LDWRPQFRVDLIPSYKAHRVAEPEPAGQPDVEEVPDELTPQVDMIMELLDAFGIPAAGAA 120

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIE 166
           GFEADD++ T    A+++   V ++S D+DL+Q+V+    P   LY      K       
Sbjct: 121 GFEADDVLGTLA--AQEQRDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLPKATLFGPS 178

Query: 167 HVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V +++G+P E+       L  L GD  D +PG+PG+G KTAA LL ++G+L+ I+  A 
Sbjct: 179 EVAERYGLPAERAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLDRIVAAAH 238

Query: 223 RIKQ---KKRRENILEYAETARLSRKLVMLRTDVPIT 256
             K    K  R  +L  +     +R +V + TD P+T
Sbjct: 239 DPKSTMAKGVRTKLLAASAYIDAARSVVRVATDAPVT 275


>gi|296394174|ref|YP_003659058.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Segniliparus rotundus DSM 44985]
 gi|296181321|gb|ADG98227.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Segniliparus rotundus DSM 44985]
          Length = 309

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 31/273 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVD +   +RAFYA P      DG PVNA+ GFC+ML  LL+  R + +A    +  D+ 
Sbjct: 2   LVDAAGLWFRAFYALPESITAPDGSPVNAVRGFCDMLAALLERDRPKRLA--VCLDLDWR 59

Query: 69  AVTFRNEIYPDYKANR-------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              FR ++ P+YKA R                P  L PQ+ ++     A G+  +  +GF
Sbjct: 60  P-KFRVDLLPEYKAQRVAPGEDLAAPGAAASEPASLAPQVDMILALLGAAGVATVGAEGF 118

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHV 168
           EADD+I T    A +    V +++ D+DL+Q+V+    P    Y      K E +    V
Sbjct: 119 EADDVIGTLA--ARERRDDVVVVTGDRDLLQVVADEPVPVRVRYIGRGVAKSELLGPAEV 176

Query: 169 IKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR- 223
            +++G+PPE+       L  L GD  D +PG+ G+G KTAA L+  +G+L   L  A   
Sbjct: 177 AERYGLPPERAGAAYAELAVLRGDPSDGLPGVAGVGEKTAAKLISAFGSLAGTLEAAKNG 236

Query: 224 -IKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
            +   K ++ +L   +  R + ++V +R DVP+
Sbjct: 237 DVAPPKAQKALLAAEDYIRRAARVVFIRDDVPV 269


>gi|13357976|ref|NP_078250.1| DNA polymerase I [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762216|ref|YP_001752498.1| hypothetical protein UPA3_0432 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920415|ref|ZP_02931734.1| Exo [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508564|ref|ZP_02958081.1| Exo [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701745|ref|ZP_02971432.1| Exo [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|17367031|sp|Q9PQ75|EX53_UREPA RecName: Full=5'-3' exonuclease
 gi|11280430|pir||C82895 DNA polymerase I 5'-3'-exonuclease domain homolog UU414 [imported]
           - Ureaplasma urealyticum
 gi|6899402|gb|AAF30825.1|AE002138_12 DNA polymerase I: 5'-3' exonuclease domain protein [Ureaplasma
           parvum serovar 3 str. ATCC 700970]
 gi|168827793|gb|ACA33055.1| Exo [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902857|gb|EDT49146.1| Exo [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676010|gb|EDT87915.1| Exo [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701015|gb|EDU19297.1| Exo [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 289

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 152/286 (53%), Gaps = 13/286 (4%)

Query: 9   LVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           ++DG+S IYRAF+AT      + +   +P NAI    +M++K+L   +     ++  +  
Sbjct: 6   VIDGNSLIYRAFHATYKQAEWAVEKQLMPTNAIKLVASMIFKILNQEQ----FTYGLIAM 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + Y  YKA R  +   L+ QLP ++    A G   I   G EADD + +++
Sbjct: 62  DASKQTFRAQEYAAYKATRKPMDAKLIVQLPYLKKLFVAMGFRIISQPGIEADDFVGSFS 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEHV-IKKWGIPPEKMV 180
            +  K     TI S+D+D++QL++  T L      T   ++I++ +  +   GI P +++
Sbjct: 122 NLMNKFDVDTTIYSSDRDMLQLINKNTKLKLLKTGTSVMQEINLTNFSLLNNGILPYQII 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             + L GDS DN+ G+ GIG KTA  LL +Y N+ENI  N  +I    + + ++E+ + A
Sbjct: 182 EYKGLVGDSSDNLIGVKGIGPKTAINLLLKYDNIENIYTNLEKIAPSVKNK-LIEHKDMA 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            LS+KL  ++TD+     LE+ +L+  N   L     +L+   + N
Sbjct: 241 FLSKKLAAIQTDLLFDEKLENFVLKPYNTQELDELFTSLKINNMQN 286


>gi|83286526|ref|XP_730200.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489855|gb|EAA21765.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 1103

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 169/343 (49%), Gaps = 53/343 (15%)

Query: 667  IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI--- 723
            II NI  +R+  K+   Y ++LP +I K T+++H   +     TGRL+  +PNLQNI   
Sbjct: 765  IINNIKLYRESKKLFQNYIENLPKYIQKNTKKIHCNLNQLGASTGRLSCDQPNLQNIHSK 824

Query: 724  ---PIKTDLGQ----KIRRAFISPPT--KKLISADYSQIELRILAHIAKITPLYQVFENS 774
                I   L Q     I++  I   +  K L++ DY Q+EL ++A+++    L ++  NS
Sbjct: 825  FRCTISLKLNQLNSISIKKENIKNTSINKNLLTFDYKQMELFVMAYLSFDNQLLKMLNNS 884

Query: 775  LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
             D+    A  +F  N  +++ ++RR  KT+ + I+YG S   LA  L I  + A   I  
Sbjct: 885  -DVFVETAKILFNTN--EITKELRRMTKTVIYGILYGQSENGLAKNLLISENFAKSLIDN 941

Query: 835  YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
            +F+ +P ++++++K K  V+    V T+ GR+   D        I+N   R ++N PIQG
Sbjct: 942  FFNFYPNVYKFMQKQKILVKNMNSVYTLIGRKRIVD------LGIKN-KYRISMNTPIQG 994

Query: 895  SAADITRRAMISVH---------------------------KSLEDHKLATKMLLQIHDE 927
             +ADI + A++S +                           K  +++  +TK++LQIHDE
Sbjct: 995  CSADIMKFALLSCNKIISFDNNINKDINIFLKMNNINVSLLKKYQNYIKSTKLILQIHDE 1054

Query: 928  LVFEVPEEEITTASQII--VHSMEK--ACLPKINLRVPLKVNI 966
            L+FE  E        I+      +K    L   NL++P+K  I
Sbjct: 1055 LLFECDENGTHDIINILKPFGKFDKFDNILRDFNLKLPIKAEI 1097



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 54/92 (58%), Gaps = 5/92 (5%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +L +Y ++++P+I  +S++E  GI ++Q  ++++    S N L  ++ I +L G   NL+
Sbjct: 552 ILTLYTKIEQPLIFCISEIEKEGIYLNQKKIQEIQNN-SNNPLIYKKQIEELCGYDINLN 610

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           S KQ+  +L +K+ F         Q KTT+++
Sbjct: 611 SSKQVSSLL-SKILFSDSF---NQQDKTTSEN 638


>gi|291320097|ref|YP_003515355.1| DNA polymerase I: 5' 3' exonuclease domain [Mycoplasma agalactiae]
 gi|290752426|emb|CBH40397.1| DNA polymerase I: 5' 3' exonuclease domain [Mycoplasma agalactiae]
          Length = 305

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/276 (34%), Positives = 141/276 (51%), Gaps = 25/276 (9%)

Query: 1   MQKENHL-FLVDGSSFIYRAFYAT-------PLLSRKHDGLPVNAIAGFCNMLWKLLQNS 52
           M  EN L  LVDG+  I+++FYA+        +L  K DG   N +  F   L+KL++  
Sbjct: 1   MNSENKLMLLVDGNFLIFQSFYASYNKYNPNSVLVAK-DGTTTNGVHVFFQTLFKLIKFY 59

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           +     +H  + FD    T R+E Y +YKA R K PE++  Q  L +    A  I   E 
Sbjct: 60  K----PTHMFIAFDAKGKTKRHEEYDNYKAGREKAPEIIFEQFDLAKKILSAMNIKWFEK 115

Query: 113 QGFEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVK------EEKID- 164
            G+EADD+IAT   IA+    F   I S DKDL+QLV+    +   +K      E K++ 
Sbjct: 116 VGYEADDLIAT---IAKHNSHFNNYIYSKDKDLLQLVNENNSIIKVIKKVGNFTEYKLET 172

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
           I   +  +GI P ++   + L GDS D + G+ GIG K A  LL E+G LE I  N  +I
Sbjct: 173 INEFVDIYGINPNQIPDYKGLAGDSSDKLKGVAGIGPKKAISLLNEFGTLEAIYENIYKI 232

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
              K +E +    E+A   ++L +L +DV +   +E
Sbjct: 233 -SGKTKEYLENDCESAHFCKRLAILNSDVEMDTNIE 267


>gi|315282488|ref|ZP_07870892.1| DNA polymerase I [Listeria marthii FSL S4-120]
 gi|313613872|gb|EFR87612.1| DNA polymerase I [Listeria marthii FSL S4-120]
          Length = 143

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 4/143 (2%)

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           D+I RYF  +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N
Sbjct: 1   DFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMN 60

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQGSAADI ++AMI + + L+  KL  K+LLQ+HDEL+FE PE EI    +I+   ME
Sbjct: 61  TPIQGSAADIIKKAMILMSERLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVME 120

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
            A    + L VPLKV+    + W
Sbjct: 121 NA----VELSVPLKVDSAFGDTW 139


>gi|297161907|gb|ADI11619.1| 5'-3' exonuclease [Streptomyces bingchenggensis BCW-1]
          Length = 308

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 90/272 (33%), Positives = 143/272 (52%), Gaps = 30/272 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D SS  +RA++  P   R  DG PVNA+ G  + + +L+Q+   + + +   + FD
Sbjct: 5   LMLLDTSSLYFRAYFGVPESVRAPDGTPVNAVRGLLDFIARLVQDHHPDDLVA--CMDFD 62

Query: 67  YPAVTFRNEIYPDYKANR-------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +    +R ++ P YKA+R              ++P+ L PQ+P++     A GI  +   
Sbjct: 63  WRP-KWRVDLIPSYKAHRVAEEAPAPDGVDQEEVPDTLSPQVPVIDEVLDAVGIARVGAD 121

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---LYDTVKE----EKIDIE 166
           G+EADDII T   +A +    V I++ D+DL QLV  +     LY  VK     + ID +
Sbjct: 122 GYEADDIIGT---LAGRASGPVDIVTGDRDLFQLVDDSRAARVLY-PVKGVGTLQVIDED 177

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            + +K+G+       L  L GD+ D +PG+PGIG KTAA LL  YG+L  I+  A+    
Sbjct: 178 ALREKYGVGGAGYAELALLRGDTSDGLPGVPGIGEKTAAKLLASYGDLAGIMAAAADPAS 237

Query: 227 K---KRRENILEYAETARLSRKLVMLRTDVPI 255
           K    +R  + E  E   ++ K+V + +DVP+
Sbjct: 238 KLTPAQRRRLEEAREYVAVAPKVVRVASDVPL 269


>gi|238787248|ref|ZP_04631047.1| Uncharacterized exonuclease xni [Yersinia frederiksenii ATCC 33641]
 gi|238724510|gb|EEQ16151.1| Uncharacterized exonuclease xni [Yersinia frederiksenii ATCC 33641]
          Length = 232

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 123/218 (56%), Gaps = 3/218 (1%)

Query: 49  LQNSRKESIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           LQ     S  +H   +FD    + ++R++  PDYKA R  +P+ L  ++PL+R A  + G
Sbjct: 14  LQQLISHSQPTHAVAVFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIREAFISLG 73

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +      G EADD+ AT T      G  VTIISTDK   QL++P   + D  ++  +D+ 
Sbjct: 74  VNCWHSPGNEADDLAATLTAKVSSAGHQVTIISTDKGYCQLLAPNVQIRDYFQKRWLDMP 133

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +++G+ P ++     L G S   IPG+ GIG KTAALLLQ+  +LE +      + +
Sbjct: 134 FVKQEFGVLPHQLPDYWGLAGISSSKIPGVAGIGAKTAALLLQQANSLEELYQGIDAVPE 193

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           K R++ + E+ E A + +++  L+TD+P+T  L+ L L
Sbjct: 194 KWRKK-LQEHREMAFICKQIATLKTDLPLTGNLQQLRL 230


>gi|148377432|ref|YP_001256308.1| DNA polymerase I [Mycoplasma agalactiae PG2]
 gi|148291478|emb|CAL58863.1| DNA polymerase I: 5' 3' exonuclease domain [Mycoplasma agalactiae
           PG2]
          Length = 305

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 150/302 (49%), Gaps = 26/302 (8%)

Query: 1   MQKENHL-FLVDGSSFIYRAFYAT-------PLLSRKHDGLPVNAIAGFCNMLWKLLQNS 52
           M  EN L  LVDG+  I+++FYA+        +L  K DG   N +  F   L+KL++  
Sbjct: 1   MNSENKLMLLVDGNFLIFQSFYASYNKYNPNSVLVAK-DGTTTNGVHVFFQTLFKLIKFY 59

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
                 +H  + FD    T R+E Y DYKA R K PE++  Q  L +    A  I   E 
Sbjct: 60  N----PTHLFIAFDAKGKTKRHEEYDDYKAGREKAPEIIFEQFDLAKKILSAMNIKWFEK 115

Query: 113 QGFEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVK------EEKID- 164
            G+EADD+IAT   IA+    F   I S DKDL+QLV+    +   VK      E K++ 
Sbjct: 116 VGYEADDLIAT---IAKHNSQFNNYIYSKDKDLLQLVNQNNSIIKVVKKVGNFTEYKLET 172

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
           +      +GI P ++   + L GDS D + G+ GIG K A  LL E+G LE I  N ++I
Sbjct: 173 VNEFADIYGINPNQIPDYKGLAGDSSDKLKGVAGIGPKKAISLLNEFGTLEAIYENINKI 232

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
              K +E +    E+A   ++L +L + V +   +E   +   N  + IS LK   F  +
Sbjct: 233 -TGKTKEYLENDCESAHFCKRLAILNSYVEMDTNIEDYKIM-LNQDKAISILKEFGFDSI 290

Query: 285 IN 286
           ++
Sbjct: 291 LD 292


>gi|256081122|ref|XP_002576822.1| DNA polymerase I [Schistosoma mansoni]
 gi|238662107|emb|CAZ33059.1| DNA polymerase I, putative [Schistosoma mansoni]
          Length = 787

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/499 (24%), Positives = 217/499 (43%), Gaps = 101/499 (20%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P   ++++ME  G  ++ D L +    + K    LE   Y L+G+ F + SPK++  
Sbjct: 288 IELPCQSLLARMESNGFILNLDDLNKCHDSLLKACKQLESVAYRLAGQPFPMDSPKEISK 347

Query: 632 ILFTKLKFPS-------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
           +LF  L  P                      + ++         L       +P+   I+
Sbjct: 348 VLFKWLHLPQITDPNDLIMNRKRSQSYLLNGRNRSNHLPKATNTLLSKLTNLHPLPAVIM 407

Query: 673 EWRQLSKIKSTYADSLPNHI--------NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           EWR ++ I     +SL +            +  R+   Y +  T TGR+ S+ PNLQ++P
Sbjct: 408 EWRHINGILEKIFNSLVSTCRLIYISSTGDQPLRISPTYDVY-TATGRIISIMPNLQSVP 466

Query: 725 -----------------------------------IKTDLGQKI-----RRAFISPPTKK 744
                                              I ++L + I     R AF +P    
Sbjct: 467 KDIVIDWSKLHYKSSTVDNNCLNNNSEKWTSPFDQILSELPKSIETIRPRCAFHAPVGGL 526

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKT 803
           LIS D+ Q+ELR+LA+ +K   L ++        + +AA    + +  +V+   R+ AK 
Sbjct: 527 LISGDFCQLELRLLAYFSKDVELLKLLSVVEHASQTLAAHWLNIPHSNQVTDVQRQQAKQ 586

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           + ++I+YG+    LA+QL + +  A   I  + + +PG+ ++I+       + G ++T+ 
Sbjct: 587 LCYAILYGMGSQTLASQLNVSQQNAQKLIDSFLNTYPGVQKFIKTAVLTAHREGQIKTLN 646

Query: 864 GR---------RIHYD-----EIN---SPKSSIRN-----INERAAINAPIQGSAADITR 901
           G          +  +D     E+N   S K  +RN       E  A+N  IQGSA++I +
Sbjct: 647 GHIRLLPVLNSKTVFDSGTPYELNCNWSKKYDLRNHFAVIKAEGQAVNIIIQGSASEIAK 706

Query: 902 RAMISVHKSLEDHKLA--TKMLLQIHDELVFEV-PEEEITTASQIIVHSM---EKACLPK 955
            AM++V +++    +     ++L  HDEL++EV PE       ++I  +M    K C   
Sbjct: 707 IAMLAVDEAIHSSNIPGNAHLVLHEHDELIYEVFPESSAKQFGELIRQTMSNTSKHC--- 763

Query: 956 INLRVPLKVNIKVSNNWQE 974
            N+ VPL V +++ NNW +
Sbjct: 764 -NIDVPLPVKLRIGNNWSD 781


>gi|144575155|gb|AAZ43936.2| putative DNA polymerase I [Mycoplasma synoviae 53]
          Length = 294

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 136/253 (53%), Gaps = 14/253 (5%)

Query: 9   LVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++DG+  ++++FYAT      ++ R  +G P NAI  F   L K L   + +    +  +
Sbjct: 10  IIDGNYLMFQSFYATYRGDINVILRTSNGTPTNAITLFLKQLVKYLVFYKPD----YLFI 65

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    T R+E+   YKANR K P+ L  Q  L++   +   +   E  G EADD+IAT
Sbjct: 66  AFDAKERTKRHELLDRYKANRIKAPQELFIQFDLIKEILKEMKVFYYESAGDEADDLIAT 125

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +      E     I S DKDL+QLV+  T ++   K+E++   +  +K+ I P++++  +
Sbjct: 126 FC--KNFESLEKFIFSRDKDLLQLVNKNTRVF--FKDEEVTYLNFFEKYQINPDQIIDFK 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIKQKKRRENILEYAETARL 242
           AL GD  DN+PGI GIG KTA  LL E+   ENI  N  S++  +K + N+L+  E   L
Sbjct: 182 ALKGDPSDNLPGIKGIGDKTAIKLLNEFKTFENIYQNLDSKLISEKVKNNLLKGKENGML 241

Query: 243 SRKLVMLRTDVPI 255
             +L  L  +V +
Sbjct: 242 CYQLAKLNYEVEV 254


>gi|28395579|gb|AAO39143.1| exodeoxyribonuclease IX-like protein [Photorhabdus luminescens]
          Length = 252

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             I    + L +L+Q++      +H   
Sbjct: 3   HLLIVDALNLIRRIHAVQGSP------------CIPACEHALRQLIQHTHP----THAVA 46

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++I PDYKA R  +P+ L  ++P +R + +  G+     +G EADD+ 
Sbjct: 47  VFDEENRSHSWRHQILPDYKAGRSAMPDNLQQEMPQIRASFEQQGVACWHAEGHEADDLA 106

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ PE++  
Sbjct: 107 ATLAVKVTSAGHNVTIVSTDKGYCQLLSPNIRIRDYFQKRWLDMPFVQQEFGVLPEQLPD 166

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGI GIG KTAA LLQ+ G L+N+  N  + +  K R  +    E A 
Sbjct: 167 YWGLAGISSSKIPGIQGIGPKTAATLLQQAGTLDNLFQNLDQ-QPDKWRNKLESNKEMAF 225

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +SR++  LRTD+ +   L+ L L
Sbjct: 226 ISREVASLRTDLDLNGNLQQLRL 248


>gi|167393523|ref|XP_001740613.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165895221|gb|EDR22960.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 226

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 7/222 (3%)

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           ++LRILA+  K   L + F++++DIH+++AA     N+  ++   RR AKTI +  IYGI
Sbjct: 1   MKLRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVNDITDGERRKAKTIVYGCIYGI 60

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            PF LA QL I   E+  +++ +  +FP   ++ E+        G+V TI  RR   + +
Sbjct: 61  GPFSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIITNASTTGFVHTINNRRRRINNL 120

Query: 873 --NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
             +S K ++   ++R A+N+PIQG+AADI +  MI + K +    L  ++LL IHDE+V 
Sbjct: 121 TDSSDKKTLAE-SKRIAVNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVL 179

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           EVP+  +      + + ME      + L VPL V ++    W
Sbjct: 180 EVPDHLLDEVCVTLKYLMEHI----VQLEVPLVVTVETGKKW 217


>gi|71894539|ref|YP_278647.1| putative DNA polymerase I [Mycoplasma synoviae 53]
          Length = 291

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 136/253 (53%), Gaps = 14/253 (5%)

Query: 9   LVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++DG+  ++++FYAT      ++ R  +G P NAI  F   L K L   + +    +  +
Sbjct: 7   IIDGNYLMFQSFYATYRGDINVILRTSNGTPTNAITLFLKQLVKYLVFYKPD----YLFI 62

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    T R+E+   YKANR K P+ L  Q  L++   +   +   E  G EADD+IAT
Sbjct: 63  AFDAKERTKRHELLDRYKANRIKAPQELFIQFDLIKEILKEMKVFYYESAGDEADDLIAT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +      E     I S DKDL+QLV+  T ++   K+E++   +  +K+ I P++++  +
Sbjct: 123 FC--KNFESLEKFIFSRDKDLLQLVNKNTRVF--FKDEEVTYLNFFEKYQINPDQIIDFK 178

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIKQKKRRENILEYAETARL 242
           AL GD  DN+PGI GIG KTA  LL E+   ENI  N  S++  +K + N+L+  E   L
Sbjct: 179 ALKGDPSDNLPGIKGIGDKTAIKLLNEFKTFENIYQNLDSKLISEKVKNNLLKGKENGML 238

Query: 243 SRKLVMLRTDVPI 255
             +L  L  +V +
Sbjct: 239 CYQLAKLNYEVEV 251


>gi|296128451|ref|YP_003635701.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
 gi|296020266|gb|ADG73502.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
          Length = 326

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 137/278 (49%), Gaps = 30/278 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RAF+  P   R  DG PVNA+ G   M+ +L+ + R   + + +   
Sbjct: 9   GRLLLLDSASLYFRAFFGVPDSVRAPDGTPVNAVRGLVEMIARLVADRRPTRLVACWDDD 68

Query: 65  FDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +  PA  FR E  P YKA+R            ++PE L  Q+P++     A GIP +   
Sbjct: 69  W-RPA--FRVEAVPSYKAHRVAREVPGTTGEEEVPEALTAQVPVIVEVLAALGIPRLGAP 125

Query: 114 GFEADDIIATYTYIAEKEGFA----VTIISTDKDLMQLVS---PTTCLYDTVKEEK---- 162
           G EADD+I T          A    V +++ D+DL QLV    P   LY  VK  K    
Sbjct: 126 GHEADDVIGTLVAREAARPAAERAAVDVVTGDRDLFQLVDDAVPVRVLY-PVKGVKDLLE 184

Query: 163 IDIEHVIKKWGIPPEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI-- 219
           +D   +++++G+P  +    +  L GD  D +PG+PGIG KTAA LL  YG LE +L   
Sbjct: 185 VDQGVLVERYGVPTGRAYADMAVLRGDPSDGLPGVPGIGEKTAASLLARYGTLEGVLAAR 244

Query: 220 -NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPIT 256
             A R     +R  + + A+   ++ ++V +  D P+ 
Sbjct: 245 DAADRGLTATQRTRLTDAADYLAVAPRVVTVAPDAPVA 282


>gi|289674484|ref|ZP_06495374.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 141

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/141 (45%), Positives = 93/141 (65%), Gaps = 4/141 (2%)

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER AINAP+Q
Sbjct: 3   RYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQ 62

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+ I   M  A  
Sbjct: 63  GTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVSEQIRPHMSGAA- 121

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L VPL V + V NNW E
Sbjct: 122 ---QLAVPLLVEVGVGNNWDE 139


>gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01]
 gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01]
          Length = 682

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 139/533 (26%), Positives = 234/533 (43%), Gaps = 68/533 (12%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGI---SMRGFEDIMLMSYVLDSGRSSHDIASI-AQK 511
           F   E  L +GHN+K+D L L + G+   S +   D  L   VL      H  A + A K
Sbjct: 194 FSREEGPLLVGHNLKFDLLFLLKAGVWRASGKRLWDTGLAHQVL------HAQARMPALK 247

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK---LIVEKLLHV 568
            L+    + L++     P   +S  QV  +A  ++ V L L+   R +   L +EK+L V
Sbjct: 248 DLAPGLDKTLQTSDWGGP---LSSEQVA-YAGLDAAVPLVLYREQRERARTLRLEKVLEV 303

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
             R     +  V+ ME+ G+    +L ++ + E  +   +L   +        N +SP Q
Sbjct: 304 ERR----ALPAVAWMELKGVPFAPELWEEAAREAEREAEALRGELPF----GVNWNSPAQ 355

Query: 629 -LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
            L  +    L  P   +     ++            ++P++  +L +R+ +K  STY   
Sbjct: 356 VLAYLKGEGLDLPDTREDTLAGYR------------EHPLVAKLLRYREAAKRVSTYGKE 403

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
              H+N  T R+H  +      TGR+A  +PNLQ +P    L    RRAF     + ++ 
Sbjct: 404 WAKHLNPATGRIHPSWQQIGAETGRMACRKPNLQQVPRDPAL----RRAFRPKEGRVMLK 459

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD+SQIELRI A IAK   + + F    D+H + A+ + G  +E+V  + R+ AK +NF 
Sbjct: 460 ADFSQIELRIAAAIAKEGRMLRAFREGKDLHALTASLVLGKPLEEVGKEDRQLAKALNFG 519

Query: 808 IIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           ++YG+    L      A  +++   EA      +F  +P +  +    ++       V T
Sbjct: 520 LLYGLGAEGLRRYALTAYGVKLTLEEAQKLRDAFFRAYPALKRW---HRSQPEGEVVVRT 576

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL--ATK 919
           + GRR   D                 +N P+QG+ AD  + A+  +    E+  L     
Sbjct: 577 LLGRRRTTDRYTE------------KLNTPVQGTGADGLKMALALL---WENRGLLWGAF 621

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +L +HDE+V E PEE      + +   M +     +   VP++V   +  +W
Sbjct: 622 PVLAVHDEVVLEAPEEGAKEYLETLTALMRRGMEEVLGGAVPVEVEGGIYRDW 674


>gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6]
 gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6]
          Length = 628

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 195/431 (45%), Gaps = 55/431 (12%)

Query: 582 QMEITGIQID----QDLLKQVSAEISKNLLSLEEN-------IYDLSGEKFNLS-SPKQL 629
           +MEI+GI +D    +DL+ Q   EI   +  +++             G++     +P + 
Sbjct: 215 EMEISGIGLDSSGARDLIDQEEDEIIDQIWRMQDEAERKGFVTVSFDGKRLCCYLNPDRQ 274

Query: 630 GDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            D++ F   +    A TK       A+ L+ +        + ++ +R LS     + +  
Sbjct: 275 EDVMAFLAKRGYRPANTK-------AEVLKSLAAAGCSFAEALMRYRHLS-YNLLFLNKW 326

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
              ++    RVH  Y    + TGR++S  PN Q IP + D    IRR F     K+ + A
Sbjct: 327 LEKVHPLDGRVHPQYFQIPSSTGRISSRHPNAQQIPRRGDDAPAIRRLFRPAAGKRYVKA 386

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S IELRI+A I+    + + F   +D+HR+ A+ I G   E+V+   R+ AK +NF +
Sbjct: 387 DLSNIELRIMARISGDEAMQEAFIKGIDLHRLTASRISGTPFEEVTDSQRQAAKAMNFLL 446

Query: 809 IYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHEYIEKT------------K 850
           IYG S   L  ++       I   E  + ++R+F  +PG+ E+ +               
Sbjct: 447 IYGGSAKSLQWRILSDYGEFICLDETEERLERFFCSYPGVREWQKMQLSQMSYTMQHHFH 506

Query: 851 NFVRQNGY-------VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           N VR  G+         TI GRR  +    +  ++    ++    N P QG+ AD+ +  
Sbjct: 507 NCVR--GFFSLPLTATRTILGRRRIWPRFGAGITA----SKFQMYNTPCQGTGADLIKLV 560

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M  V++ L D +   +++  IHDE++ EVPE+     +  +   ME+    ++   VP+K
Sbjct: 561 MAEVYEKLSDEE--ARIIGSIHDEIILEVPEDRAEEYAARLKEIMERIG-SEMLYPVPVK 617

Query: 964 VNIKVSNNWQE 974
              KV  N  E
Sbjct: 618 AEAKVMRNLAE 628


>gi|284931594|gb|ADC31532.1| 5'-3' exonuclease [Mycoplasma gallisepticum str. F]
          Length = 288

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 149/295 (50%), Gaps = 19/295 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+      ++DG+S ++RAFYAT  +     K+   P N I     M+ K+L + + +  
Sbjct: 1   MKSTKKALIIDGNSLVFRAFYATLSMYEYAIKNGIRPSNGIKTSLKMINKILNSDQYD-- 58

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +  V FD    T R +IY  YKA R K  E L+ QL  ++      G+  +   G EA
Sbjct: 59  --YALVAFDSKEKTDRAKIYEGYKATRKKPVEGLIEQLVALQDGFSYLGLNVLSSPGIEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--------EEKIDIEHVI 169
           DD+I +++ +A K+     I ++D+D+ QLV+    +Y  VK         E+   EH  
Sbjct: 117 DDLIGSFSALANKDQITCHIYTSDQDIFQLVNKYNVVYQFVKGVSVFNQVHERNFQEHF- 175

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
               + PE ++  +AL GDS DNIPG+ GIG KTA  L+++Y N++NI  N  +IK    
Sbjct: 176 --HDLKPEDVIQYKALVGDSSDNIPGVKGIGEKTAVQLIKDYLNIDNIYANLDQIK-PSI 232

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           ++ ++       LS++L  +RTD  +   + +  L+  +     +F +  + + L
Sbjct: 233 KDKLVANKANCYLSKELATIRTDCLVDQDINNFKLKPLDQQNYFAFCEYYKISHL 287


>gi|238810016|dbj|BAH69806.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 300

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 155/309 (50%), Gaps = 34/309 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT------PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M K+N L L+DG+  ++ +FYA+        + R   GL  N +  F   L KL+   + 
Sbjct: 7   MNKDNFL-LIDGNYLLFSSFYASYNPDRLENIMRSPQGLTTNGVHVFLMTLSKLIAYFK- 64

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
                +  + FD    T R++I+ DYKA R K PE++  Q  L++       I   E  G
Sbjct: 65  ---PKYLFIAFDAYGETRRHKIFKDYKAGRTKAPEIIFEQFSLIKEILTKLNIKWFEQVG 121

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHV 168
            EADD+IAT   +A+ +     I S DKDL+QLV+  T +   VKE      E  DI + 
Sbjct: 122 DEADDLIAT---LAQNQDCNNLIFSKDKDLLQLVNLNTSVIKVVKENFKVSYELEDINNF 178

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
               GI P ++V  + L GDS DN+ GI GIG+K A  L+Q + ++EN+  N  +IK  K
Sbjct: 179 ETIHGIKPSQVVDYKGLAGDSSDNLRGINGIGHKGAIKLIQTFDSIENMYQNIDQIKG-K 237

Query: 229 RRENILEYAETARLSRKLVMLRTDVP----ITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +E +L+  + A L + L  L  +V     I+  L +L LED         L A+ F  L
Sbjct: 238 TKEKLLDEKDQAFLCKALAKLNLNVDMNKNISDYLLNLNLEDG--------LDAMRFYGL 289

Query: 285 INRVATTYD 293
            N+ A  ++
Sbjct: 290 -NKCANLFE 297


>gi|317493200|ref|ZP_07951623.1| 5'-3' exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918860|gb|EFV40196.1| 5'-3' exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 250

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 136/263 (51%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R  A   +P             +    + L +LL +S+     +H   
Sbjct: 4   HLLIIDALNLIRRIHAVQGSP------------CVVACQHALQQLLAHSQP----THAVA 47

Query: 64  IFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R++  PDYKA R  +PE L  ++P +R A    G+ +    G EADD+ 
Sbjct: 48  VFDEDDRDNSWRHQALPDYKAGRSAMPENLATEMPAIREAFAKLGVQSWHSAGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT  +     G  VTI+STDK   QL++PT  + D  ++  +D+  V K++G+ PE++  
Sbjct: 108 ATLAHKIALTGHQVTIVSTDKGYCQLLAPTIQIRDYFQKRWLDLPFVKKEFGVEPEQLTD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   I GIPGIG K AA LL E+G+L  I      +  K R++ + E+ E A 
Sbjct: 168 YWGLAGISSSKISGIPGIGPKAAATLLNEFGSLSAIFEQIENVPSKWRKK-LEEHREQAE 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L +K+  L+T++ I+  L+ L L
Sbjct: 227 LCKKVATLQTNLTISGNLQQLRL 249


>gi|74002862|ref|XP_545125.2| PREDICTED: similar to DNA polymerase theta (DNA polymerase eta)
           [Canis familiaris]
          Length = 576

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 138/565 (24%), Positives = 234/565 (41%), Gaps = 151/565 (26%)

Query: 465 IGHN-IKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           I H+ I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    +L+
Sbjct: 19  ISHDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSKEPTLHSIVSSFLPHELL-LLE 77

Query: 523 SRKSSIPIDKISDSQVQEHA---------IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
             ++   I  +  +   EH+         I   N + QL  LL+     E L  V+ +++
Sbjct: 78  GIETGQGIQSLGLNVNTEHSGRYRASVESILAFNAMNQLNSLLKK----ENLQDVFCKVE 133

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + + +
Sbjct: 134 MPSQYCLALLELNGIGFSTTECESQKHIMQAKLDAIEIQAYQLAGHSFSFTSSDDIAEDV 193

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
             KLK                          +P+   ILEWR+++   +     L     
Sbjct: 194 LNKLK------------------------ALHPLPGLILEWRRITNAITKVVFPL----- 224

Query: 694 KRTQRVHTFYSL--------ASTMTGRLASLEPNLQNI--------PI------------ 725
           +R +R++ F  +        + T TGR+  +EPN+QN+        PI            
Sbjct: 225 QREKRLNPFLGMERIYPVSQSHTATGRITFMEPNIQNVPRDFEIKMPILVGESPPSQALA 284

Query: 726 -----------------------------KTDLGQ----KIRRAFISPPTKKLISADYSQ 752
                                         +D G      +R AF+      +++ADYSQ
Sbjct: 285 KGLLPVYGRGRGKRSCGPNSGHQAQVEERASDQGMPFSVSMRHAFVPFSGGLILAADYSQ 344

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +ELRILAH++    L QV     D+ R +AAE   +  E V   +R+ AK I + IIYG+
Sbjct: 345 LELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGM 404

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
               L  Q+ I  ++AA YI+ +  R+ GI+ ++ +T    ++NG+V+TI GRR +   I
Sbjct: 405 GAKSLGEQMGIKENDAACYIESFKSRYTGINHFMRETVKNCKRNGFVQTILGRRRYLPGI 464

Query: 873 NS------------------------------------------PKS--SIRNIN-ERAA 887
           N                                           P S  ++ ++N ER A
Sbjct: 465 NDNNPYHKAHGKHSHGQYINDCDCIPIRPYLQKQELSQIWPEGLPTSGPTVPSLNAERQA 524

Query: 888 INAPIQGSAADITRRAMISVHKSLE 912
           IN  +QGSAADI + A +++ K LE
Sbjct: 525 INTTVQGSAADIVKIATVNIQKQLE 549


>gi|271967135|ref|YP_003341331.1| DNA polymerase I [Streptosporangium roseum DSM 43021]
 gi|270510310|gb|ACZ88588.1| DNA polymerase I [Streptosporangium roseum DSM 43021]
          Length = 306

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 87/265 (32%), Positives = 138/265 (52%), Gaps = 24/265 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLL-QNSRKESIASHFAVIF 65
           L L+D  S  +RAFY  P      DG+PVNA+ G  +M+  L+ Q+S  E +A   A   
Sbjct: 7   LMLLDTPSLYFRAFYGVPESMTAPDGMPVNAVRGLIDMIAMLVRQHSPGELVACMDA--- 63

Query: 66  DY-PAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           D+ PA  FR    P YKA+R       ++P+ L PQ+P++     A GI  + + G+EAD
Sbjct: 64  DWRPA--FRVAAIPTYKAHRVASGDVEEVPDTLAPQVPVIEQVLDAVGIARLGVPGYEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLV---SPTTCLYDTVKEEKIDI---EHVIKKW 172
           D++ T    A+++   V I++ D+D+ QLV    P   LY     + +D+     V  ++
Sbjct: 122 DVMGTLAVRAKRQ---VDIVTGDRDMFQLVDDAQPIRVLYTARGVKNLDLVDEAAVAARY 178

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRR 230
           G+P         L GD  D +PG+PG+G KTAA L+  +G+LE +L  ++        +R
Sbjct: 179 GVPGRSYADFATLRGDPSDGLPGVPGVGDKTAAALITRFGSLEALLRAVDEGGDLTAGQR 238

Query: 231 ENILEYAETARLSRKLVMLRTDVPI 255
             +    +  R++  +V +  DVPI
Sbjct: 239 AKLSAARDYLRVAPAVVQVARDVPI 263


>gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 80/114 (70%)

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            RR AK INF +IYG+S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVPEYMERTR 114


>gi|145350924|ref|XP_001419843.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580075|gb|ABO98136.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 460

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 200/439 (45%), Gaps = 45/439 (10%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY---------DLSGEKFN 622
           ++ P +  +  M+   I  D   +++  A +   L  LEE             +S  +  
Sbjct: 3   IEMPFVAPIVAMQTVRIPFDARKMREEMATMDDRLKKLEEYALTQKWIVLDSSVSIARRA 62

Query: 623 LSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSK 679
           L++   L D L+  LK   P GAKT        A +L ++    ++P    I+E R + K
Sbjct: 63  LTNNTYLQDRLYKHLKLTPPPGAKTSID-----ANNLRKLYEQSNHPFPLLIIEHRSVFK 117

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTM--TGRLASLEPNLQNIPIKTDLGQK----- 732
            +  +AD++   +          YS+  T    GRLA  EPN  ++      G +     
Sbjct: 118 -RRGFADTI---LGMYADDSRIRYSIFQTNHDCGRLAHSEPNFHSLAHDMTCGDQFYGLD 173

Query: 733 -----IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL------DIHRMV 781
                IR AF+ P  K  + ADYSQ+ELRI+AH +    L  + +N        D   M+
Sbjct: 174 APKISIRSAFVPPAAKVFVRADYSQLELRIMAHFSGDRTLIHMLQNPEPNNLKDDPFTML 233

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A++ +    + V  + R + K + + ++YG    +LA+ LR+    A   + R+    P 
Sbjct: 234 ASKWYRKAPDTVLAEERTNCKNLVYGLLYGSGAKKLASDLRMCEEAAKSEVARFKSMLPR 293

Query: 842 IHEYIEKTKNFVRQN---GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           + E+++      R+      V TI  R  ++ +++S  +  R   ER A+N   QGSAAD
Sbjct: 294 LMEWLDGIVIRAREEKPIARVTTISARHRYFPDLHSKNNDDRAAAERQAVNTVCQGSAAD 353

Query: 899 ITRRAMISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           I + A++ V  +L    L    +++L +HDE VFE         +QI+ H+ME     + 
Sbjct: 354 IFKTAVVRVIDTLRTKYLIERCQLVLTVHDECVFECDARSAKAIAQIVRHAMESVA-NEF 412

Query: 957 NLRVPLKVNIKVSNNWQEE 975
           NL VPL V +++ ++  ++
Sbjct: 413 NLAVPLPVKVQIGSSLGDD 431


>gi|127513684|ref|YP_001094881.1| exonuclease IX [Shewanella loihica PV-4]
 gi|156630384|sp|A3QGM4|XNI_SHELP RecName: Full=Protein Xni
 gi|126638979|gb|ABO24622.1| 5'-3' exonuclease [Shewanella loihica PV-4]
          Length = 256

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 143/265 (53%), Gaps = 19/265 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R   A P      +GLP   +   C    KLL         SH  ++
Sbjct: 2   NRFLIIDGLNLVRRIHAAQPN-ENDVNGLP-ERVTSACR---KLLSKHN----PSHVTLV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR--LATQAF-GIPAIEIQGFEADDII 121
           +D  A+++R ++Y DYK  R  +PE L   LP ++  LA + F  I AI     EADD+I
Sbjct: 53  WDGDAISWRKKLYDDYKKGRKPMPEALSQALPALKQHLAERGFHSIDAIA----EADDVI 108

Query: 122 ATY-TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           AT  + + + +G A+ I+STDK   QL+SP   L+D   ++ I IE   ++ G+   + +
Sbjct: 109 ATLASKMVQAKGEAI-IVSTDKGFTQLLSPQIQLWDHFNQQAITIEDRERQLGVDRSQFI 167

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GDS + IPGIPGIG K+A  LL+ +  L N+  +  +I  K+ ++ + E    A
Sbjct: 168 DFLAMAGDSGNKIPGIPGIGPKSACELLKTFRTLANVYASLDKIGAKQAKK-LEEGRALA 226

Query: 241 RLSRKLVMLRTDVPITIPLEHLILE 265
           RLS KLV L+TD+P+   L +  +E
Sbjct: 227 RLSYKLVQLQTDIPLNTRLANFRVE 251


>gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli]
 gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 79/114 (69%)

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ +
Sbjct: 1   FIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            RR AK INF +IYG+S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114


>gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli]
 gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli]
 gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli]
 gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli]
 gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli]
 gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli]
 gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli]
 gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli]
 gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli]
 gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli]
 gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli]
 gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli]
 gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli]
 gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli]
 gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli]
 gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli]
 gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli]
 gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli]
 gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli]
 gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli]
 gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli]
 gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli]
 gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli]
 gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli]
 gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli]
 gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli]
 gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli]
 gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli]
 gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli]
 gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli]
 gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli]
 gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli]
 gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli]
 gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli]
 gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli]
 gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli]
 gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli]
 gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli]
 gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli]
 gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli]
 gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli]
 gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli]
 gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli]
 gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli]
 gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli]
 gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli]
 gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli]
 gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli]
 gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli]
 gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli]
 gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli]
 gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli]
 gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli]
 gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli]
 gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli]
 gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli]
 gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli]
 gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli]
 gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli]
 gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli]
 gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli]
 gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli]
 gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli]
 gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli]
 gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli]
 gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli]
 gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli]
 gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 80/114 (70%)

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            RR AK INF +IYG+S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114


>gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40]
 gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40]
          Length = 703

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 163/645 (25%), Positives = 285/645 (44%), Gaps = 157/645 (24%)

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKW- 512
           K   ++  LK+GHN+K+D    +   I      D M+ S ++ +G    D I+ + +   
Sbjct: 61  KVLSDKDVLKVGHNLKFDLKFFYMNNIYPEPIFDTMIASQMIYAGLDEPDEISEVLEALK 120

Query: 513 -----------------------LSYTRKEILKSRKS-SIPID--------KISDSQVQE 540
                                   S++ + +LK   +  +P D        ++S++Q +E
Sbjct: 121 DDLTTEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGGELSEAQ-KE 179

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ--- 597
           +AI +   +  L + L  K+    + +V+  L+   + V+  +E+TG++ID++  K+   
Sbjct: 180 YAINDVKYLKDLSIELWKKIKALNIENVF-MLEMKFLPVLVMLELTGVKIDKEGWKKKME 238

Query: 598 ---------------------VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
                                VS +  K ++ L E   D   EK NL+SP Q+  I    
Sbjct: 239 KENQELLELEKELKKEIYEKFVSKQSEKMMVGLFE---DAEYEKINLNSPLQMAKIF--- 292

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
                      G    +   LE+I   ++P IK  +E+++ +K+ +TY+     ++ K T
Sbjct: 293 -----------GLPNVSKLTLEKI---EDPTIKKYVEYKKKAKLVTTYSKE---YLEKLT 335

Query: 697 Q--RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +  R+ + YS   T TGR++S  PNLQN+P         +R   +      + ADYSQ+E
Sbjct: 336 ENNRLMSDYSQTKTATGRISSSNPNLQNVP------SWFKRYITAEEGYVPVFADYSQVE 389

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGIS 813
           LRILA+++    +     NS D+H   A +I+ +  ++ V P++R+ AKT++F+I YG S
Sbjct: 390 LRILAYLSGDEAMIDSC-NSKDMHSENARKIYKIPPDQPVPPELRKKAKTVSFAIPYGSS 448

Query: 814 PFRLATQLRIPR-SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            + L  +      +EA + I+ +F+ FP + E++EK+     QNG      GR  +Y +I
Sbjct: 449 AYGLVVRGMFSSLAEAEEAIEGFFNSFPKVKEFLEKSAKSA-QNGITRDALGRVRNYKKI 507

Query: 873 ---------------------------------NSPKSS--IRNINERA---AINA---- 890
                                            NS K +  I  ++E+    AI+A    
Sbjct: 508 YISEDEKGALKILMFRLPSGISKDEFIKEVLEKNSFKDAAKIFGMDEQMLQLAISAYEKT 567

Query: 891 -------------PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
                        PIQ ++A IT+ AM+ + + L        M L +HD + FE+ +E I
Sbjct: 568 KKLAKIAREGQNHPIQATSASITKTAMVDLLEYLSMTGYGY-MTLTVHDSIFFEIKKEFI 626

Query: 938 TTASQIIVHSMEKA---CLPKINLRVPLKVNIKVS---NNWQEEN 976
             A   I   ME+A    +P I   V ++V  K+S   N+  +EN
Sbjct: 627 FDALPKIKEIMEQAGPKVVPGIITPVDVEVGEKISVYCNSCGKEN 671


>gi|312377443|gb|EFR24272.1| hypothetical protein AND_11228 [Anopheles darlingi]
          Length = 2035

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 213/466 (45%), Gaps = 66/466 (14%)

Query: 555  LLRP--KLI--VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            L+RP  KL+  V  L   ++  + P+  V+++ E+ G  +D+  L  +   +  +   + 
Sbjct: 1580 LMRPVRKLLQQVAGLEACFQSREMPVHVVLARSEVVGFPVDRTALGALIERLKASRERIA 1639

Query: 611  ENIYDLSGEK---FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
             +   L+G +   F  S        L    + P          +T  Q LE++   DNP+
Sbjct: 1640 TDARLLNGGRKLDFGSSRAVAAALRLAASRERP----------RTVRQVLERL---DNPL 1686

Query: 668  IKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNI--- 723
               ++ +R++    +   + L   I    + RVH   S   T TGR+   EPNLQ +   
Sbjct: 1687 AALVIAYRKIDSNLARTIEPLYRTIQLSAESRVHG-RSHCFTSTGRITMHEPNLQTVVKD 1745

Query: 724  ---PIKTDLGQKIRRA-------------FISPPTKKLISADYSQIELRILAHIAKITPL 767
               P     G + RR                +  T+ L+SAD+ Q+EL IL H+++   L
Sbjct: 1746 FTVPAPLAGGMRERRTTDEEEHFSCRSTFACNDTTRVLLSADFCQLELCILTHLSQDRRL 1805

Query: 768  YQVFENSL------------DIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISP 814
                + S             D+ R +AA    + +  +VS ++R   K I + +IYG+  
Sbjct: 1806 LAALDGSAVADGAGSRRKPQDVFRSLAARWHQLGDASEVSDELRTRTKAIVYGVIYGMGA 1865

Query: 815  FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
              +A +L++    A   ++++   +P I  Y E+     RQ GY+ET+ GRR +   I  
Sbjct: 1866 RAMAAELQMEEESARSLMEQFHRSYPDIRRYQERVIRLTRQLGYIETLTGRRRYLPAIGQ 1925

Query: 875  ---PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-----LATKMLLQIHD 926
                  + R   ER A+   IQGSAADI + A++ + ++L  +       A +++L +HD
Sbjct: 1926 AATADPAARAEAERQAVCTTIQGSAADILKNAIVRMERNLRKYADVLDVGAIQLVLHLHD 1985

Query: 927  ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ELV+E+P  ++   ++I+  SME        L VPL+V +K  ++W
Sbjct: 1986 ELVYELPRAQLPKVAKILRSSMENCA----KLSVPLRVKLKAGDSW 2027


>gi|331006918|ref|ZP_08330163.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419238|gb|EGG93659.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 316

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 154/296 (52%), Gaps = 16/296 (5%)

Query: 7   LFLVDGSSFIYRAFYATP--LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L+D S +I++ +++ P    S K +  P  A+ G+   L +LL+  +   +A+ F   
Sbjct: 18  VLLIDASIYIFQYYFSLPDNWFSEK-ECCPTAAVYGYTAWLVRLLKAEQPARVAACFDES 76

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D     FRN+IY DYK++R    E L  QL   +  T   GI       +EADD++ + 
Sbjct: 77  LDQ---CFRNDIYSDYKSSRALPDEALAFQLNACQKITHLLGINTYASHRYEADDLLGSL 133

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             I  +    + I++ DKDL QL+  P   L+D  K+++ D + + +K+ + P+++V   
Sbjct: 134 YRICCRSTVPIAILTRDKDLGQLLQRPQDYLWDYAKKQQYDEQGIAEKFLVRPDQLVDYL 193

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI---------KQKKRRENIL 234
           AL GD+ID+IPG+PGIG KTA+ LL+ YG++E +L     +            +   N+ 
Sbjct: 194 ALVGDAIDDIPGVPGIGAKTASALLKHYGSIEIMLSQLDELLLSPPVGVRGAPRIVANLQ 253

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            Y E   ++++L  + TD+P+   ++ L  +  +  ++  F + + F  L   +A 
Sbjct: 254 GYREQIAIAQQLATIVTDLPLIGSVKELDRQKVDLSKVNRFCQEMGFPALSKTIAA 309


>gi|300724808|ref|YP_003714133.1| exonuclease IX, 5'-3' exonuclease [Xenorhabdus nematophila ATCC
           19061]
 gi|297631350|emb|CBJ92045.1| exonuclease IX, 5'-3' exonuclease [Xenorhabdus nematophila ATCC
           19061]
          Length = 251

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 118/208 (56%), Gaps = 3/208 (1%)

Query: 59  SHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
           +H   +FD    + ++R+++ PDYKA R  +P+ L  ++PL++ A    G+     QG E
Sbjct: 42  THAVAVFDEDDRSHSWRHQLLPDYKAGRSAMPDDLQQEMPLIKQAFNTLGVACWHTQGHE 101

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+ AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P
Sbjct: 102 ADDLAATLATKVANSGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDLPFVQQEFGVSP 161

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++     L G S   IPGI GIG KTAA LLQ+ G+L+N+  +    +  K R+ +  +
Sbjct: 162 NQLPDYWGLAGISSSKIPGIQGIGPKTAATLLQQTGSLDNLFQHLEN-QPDKWRKKLESH 220

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLIL 264
            E A +SR++  L+TD+ +   L+ L L
Sbjct: 221 KEMAYISREVASLKTDLSLQGNLQQLRL 248


>gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
 gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 149/306 (48%), Gaps = 23/306 (7%)

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L K+ STY     + ++   +     + LA+  +GR +  EPNLQ +P +      +R  
Sbjct: 297 LDKLVSTYRWWARDFVDADRRIRCRLHPLAAD-SGRFSCTEPNLQQVPSEY-TAPGLRAC 354

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F+  P  +LI ADY+QIELR+ AH+A    L  VF    D HR  AA + G    +V   
Sbjct: 355 FVPAPGHRLIVADYAQIELRVAAHLAPCDALGAVFRAGRDPHRATAATLTGKPEPEVESH 414

Query: 797 MRRHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            R+ AK +NF  ++G+   R  +       L +   +AA+  + +F  FPGI  +  +  
Sbjct: 415 ERKLAKAVNFGFLFGMGARRFRSYAASGYGLDLDERQAAEAREAFFRTFPGIAAWHRRVG 474

Query: 851 NFVRQNGY----VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
              R+  +    V T  GRR  +     P     + N  AA+N P+QG+AA+  + AMI 
Sbjct: 475 ALSRRGDHEAITVTTAMGRRKTF-----PAGRF-SFN--AALNIPVQGTAAEGFKAAMIR 526

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           +H+ L    +  + +L +HDE + EVPE        ++   M  A + ++   VP+ V  
Sbjct: 527 LHRELP--SIGGRGVLVVHDEYLAEVPEARAEEGKAMVEAHM-IAAMGELVHTVPIVVEA 583

Query: 967 KVSNNW 972
           +++ +W
Sbjct: 584 EIAAHW 589


>gi|254524363|ref|ZP_05136418.1| exodeoxyribonuclease IX [Stenotrophomonas sp. SKA14]
 gi|219721954|gb|EED40479.1| exodeoxyribonuclease IX [Stenotrophomonas sp. SKA14]
          Length = 311

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 137/287 (47%), Gaps = 10/287 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+  R   IA  F    D
Sbjct: 10  LYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPRHIAIAFDEALD 69

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ +Y  YKANR   PE L  Q    +    A G+  +    +EADD+I +  +
Sbjct: 70  ---SGFRHRLYAAYKANRDPAPEALKRQFVHCKALCAALGLVVLAHHDYEADDLIGSALH 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              +      IIS DKDL QL+      +D  + ++ D+  V  + G+   ++    AL 
Sbjct: 127 -QHRHSHRGVIISADKDLSQLLLDHDEQWDYARNQRWDVAGVKARHGVHAHQIADYLALC 185

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAETA 240
           GD++DNIPG+ G+G K+AA+LL  +G+++ +      +   + R        + E  E A
Sbjct: 186 GDAVDNIPGVSGVGSKSAAVLLAHFGSMDALYERLDEVPFLRLRGAAQMAVRLREQREHA 245

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            L R+L  +  D P+      L+ +  +   L    + L F  +  R
Sbjct: 246 LLWRQLTTIALDAPLEGSQPGLLRQAADPELLGGLCQTLRFGPMTRR 292


>gi|50119958|ref|YP_049125.1| exonuclease IX [Pectobacterium atrosepticum SCRI1043]
 gi|81645952|sp|Q6D8F6|XNI_ERWCT RecName: Full=Protein Xni
 gi|49610484|emb|CAG73929.1| exodeoxyribonuclease IX [Pectobacterium atrosepticum SCRI1043]
          Length = 260

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 138/263 (52%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             I    + L +L+QNS+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CITACQHALHQLIQNSQP----THAVA 47

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R+++ PDYKA R  +P+ L  +LP ++ A  A G+ +    G EADD+ 
Sbjct: 48  VFDDEDRDTSWRHQLLPDYKAGRTPMPDNLKQELPQIKTAFAAVGVESWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TIISTDK   QL++P   + D  ++  +D+  + +++ + P+++  
Sbjct: 108 ATLATKLSSAGHQATIISTDKGYCQLLAPHIQIRDYFQKRWLDLPFIEQEFSVSPQQLTD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG K+AA LLQ+ GNLE +      + +K R++ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGPKSAAQLLQQAGNLEALYQQLDAVPEKWRKK-LEQHKEMAL 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +SR++  LRTD+ +   L+ L L
Sbjct: 227 ISRQVATLRTDLTLNGNLQQLRL 249


>gi|294660324|ref|NP_853015.2| 5'-3' exonuclease [Mycoplasma gallisepticum str. R(low)]
 gi|284811981|gb|AAP56583.2| 5'-3' exonuclease [Mycoplasma gallisepticum str. R(low)]
 gi|284930493|gb|ADC30432.1| 5'-3' exonuclease [Mycoplasma gallisepticum str. R(high)]
          Length = 288

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 148/295 (50%), Gaps = 19/295 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+      ++DG+S ++RAFYAT  +     K    P N I     M+ K+L + + +  
Sbjct: 1   MKSTKKALIIDGNSLVFRAFYATLSMYEYAIKKGIRPSNGIKTSLKMINKILNSDQYD-- 58

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +  V FD    T R +IY  YKA R K  E L+ QL  ++      G+  +   G EA
Sbjct: 59  --YALVAFDSKEKTDRAKIYEGYKATRKKPVEGLIEQLVALQDGFSYLGLNVLSSPGIEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--------EEKIDIEHVI 169
           DD+I +++ +A K+     I ++D+D+ QLV+    +Y  VK         E+   EH  
Sbjct: 117 DDLIGSFSALANKDQITCHIYTSDQDIFQLVNQYNVVYQFVKGVSVFNQVHERNFQEHF- 175

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
               + PE ++  +AL GDS DNIPG+ GIG KTA  L+++Y N++NI  N  +IK    
Sbjct: 176 --HDLKPEDVIQYKALVGDSSDNIPGVKGIGEKTAVQLIKDYLNIDNIYANLDQIK-PSI 232

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           ++ ++       LS++L  +RTD  +   + +  L+  +     +F +  + + L
Sbjct: 233 KDKLVANKANCYLSKELATIRTDCLVDQYINNFKLKPLDQQNYFAFCEYYKISHL 287


>gi|326794727|ref|YP_004312547.1| 5'-3' exonuclease, SAM-fold domain-containing protein [Marinomonas
           mediterranea MMB-1]
 gi|326545491|gb|ADZ90711.1| 5'-3' exonuclease, SAM-fold domain-containing protein [Marinomonas
           mediterranea MMB-1]
          Length = 267

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 139/268 (51%), Gaps = 11/268 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFC-NMLWKLLQNSRKESIASHFA 62
           +  L L+DG + I R + A  L S K D   +  + G C + + KL+    K   ++H A
Sbjct: 7   DKKLLLIDGLNLIRRLYAA--LESEKDDIRRIERVQGACIDAIAKLV----KLFDSTHIA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           ++FD P  T+R+  YP+YK  R  + + L   +       +      I + G+EADDIIA
Sbjct: 61  IVFDSPEKTWRHTEYPEYKLGRAPMDDSLFAAIEGFAKVFRFNHWHCIRLSGWEADDIIA 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T    + + G    I+STDK   QL+  P    YD   ++  D + V+ K+G+ P++M  
Sbjct: 121 TLASKSAERGVKSIIVSTDKGFTQLLEEPNIYQYDYFGKQGFDKDWVVAKYGVFPQQMTD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY-AETA 240
             A  GD+ ++IPGI GIG KTAA + Q   ++E++  N    +Q  R ++ LE   + A
Sbjct: 181 YWAFVGDTTNHIPGIKGIGPKTAASIFQAEQSIESVFANLE--QQSARIQSQLEGNLDHA 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCN 268
             +RK+V LR DV + I L  L +   N
Sbjct: 239 LWARKMVTLRQDVSLGIRLSQLEIRSTN 266


>gi|319777593|ref|YP_004137244.1| DNA polymerase i [Mycoplasma fermentans M64]
 gi|318038668|gb|ADV34867.1| DNA polymerase I [Mycoplasma fermentans M64]
          Length = 294

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 156/309 (50%), Gaps = 34/309 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT------PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M K+N L L+DG+  ++ +FYA+        + R   GL  N +  F   L KL+   + 
Sbjct: 1   MNKDNFL-LIDGNYLLFSSFYASYNPDRLENIMRSPQGLTTNGVHVFLMTLSKLIAYFKP 59

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    +  + FD    T R++I+ DYKA R + PE++  Q  L++       I   E  G
Sbjct: 60  K----YLFIAFDAYGETRRHKIFKDYKAGRTQAPEIIFEQFSLIKEILTKLNIKWFEQVG 115

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHV 168
            EADD+IAT   +A+ +     I S DKDL+QLV+  T +   VKE      E  DI + 
Sbjct: 116 DEADDLIAT---LAQNQDCNNLIFSKDKDLLQLVNLNTSVIKVVKENFKVSYELEDINNF 172

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
               GI P ++V  + L GDS DN+ GI GIG+K A  L+Q + ++EN+  N  +IK  K
Sbjct: 173 ETIHGIKPSQVVDYKGLAGDSSDNLRGINGIGHKGAIKLIQTFDSIENMYQNIDQIK-GK 231

Query: 229 RRENILEYAETARLSRKLVMLRTDVP----ITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +E +L+  + A L + L  L  +V     I+  L +L LED         L A+ F  L
Sbjct: 232 TKEKLLDEKDQAFLCKALAKLNLNVDMNKNISDYLLNLNLEDG--------LDAMRFYGL 283

Query: 285 INRVATTYD 293
            N+ A  ++
Sbjct: 284 -NKCANLFE 291


>gi|257056192|ref|YP_003134024.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Saccharomonospora viridis DSM 43017]
 gi|256586064|gb|ACU97197.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Saccharomonospora viridis DSM 43017]
          Length = 320

 Score =  129 bits (324), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 88/275 (32%), Positives = 139/275 (50%), Gaps = 32/275 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +R+F+A P      DG PVNA+ GF + + ++L + R   + +      D
Sbjct: 5   LVLLDAASLYFRSFFALPESLTAPDGTPVNAVRGFADTVARVLTDRRPARLVACLDA--D 62

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +    FR    P YKA+R            ++P+ L PQ+P++    +A GI   E +GF
Sbjct: 63  WRP-EFRVRALPSYKAHRVAESSEEGPDVEEVPDTLTPQVPIILELLEAVGIATAEAEGF 121

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLV----SPTTCLY---DTVKEEKIDIEHV 168
           EADD+I T    A +    V +++ D+DL QLV    SP + +Y      K E +    V
Sbjct: 122 EADDVIGTLA--AREAQLPVEVVTGDRDLFQLVRSEPSPVSVIYVGKGWAKAEVLGPAEV 179

Query: 169 IKKWGIPPEKMVCLQA----LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
             ++G+P E      A    L GD  D +PG+PGIG KTAA L+  +G+LE  L+ A+R 
Sbjct: 180 AARYGLPAEHAGAAYADMAMLRGDPSDGLPGVPGIGEKTAAKLVTRFGSLE-ALVAAARD 238

Query: 225 KQ----KKRRENILEYAETARLSRKLVMLRTDVPI 255
                  + R  ++E ++    +  +V + TD P+
Sbjct: 239 GHPDVPPRARTKLVESSDYLAAAPLVVRVATDAPV 273


>gi|308190226|ref|YP_003923157.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
 gi|307624968|gb|ADN69273.1| putative DNA-directed DNA polymerase [Mycoplasma fermentans JER]
          Length = 294

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 155/309 (50%), Gaps = 34/309 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT------PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M K+N L L+DG+  ++ +FYA+        + R   GL  N +  F   L KL+   R 
Sbjct: 1   MNKDNFL-LIDGNYLLFSSFYASYNPDRLENIMRSPQGLTTNGVHVFLMTLSKLIAYFRP 59

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    +  + FD    T R++I+ DYKA R + PE++  Q  L++       I   E  G
Sbjct: 60  K----YLFIAFDAHGETKRHKIFKDYKAGRTQAPEIIFEQFSLIKDILTKLNIKWFEQVG 115

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHV 168
            EADD+IAT   +A+ +     I S DKDL+QLV+  T +   VKE      E  DI + 
Sbjct: 116 DEADDLIAT---LAQNQDCNNLIFSKDKDLLQLVNLNTSVIKVVKENFKVSYELEDINNF 172

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
               GI P ++   + L GDS DN+ GI GIG+K A  L+Q + ++EN+  N  +IK  K
Sbjct: 173 ETIHGIKPSQVADYKGLAGDSSDNLRGINGIGHKGAIKLIQTFDSIENMYQNIDQIK-GK 231

Query: 229 RRENILEYAETARLSRKLVMLRTDVP----ITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +E +L+  + A L + L  L  +V     I+  L +L LED         L A+ F  L
Sbjct: 232 TKEKLLDEKDQAFLCKALAKLNLNVDMNKNISDYLLNLNLEDG--------LDAMRFYGL 283

Query: 285 INRVATTYD 293
            N+ A  ++
Sbjct: 284 -NKCANLFE 291


>gi|156390270|ref|XP_001635194.1| predicted protein [Nematostella vectensis]
 gi|156222285|gb|EDO43131.1| predicted protein [Nematostella vectensis]
          Length = 203

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 112/192 (58%), Gaps = 3/192 (1%)

Query: 749 DYSQIELRILAHIAKITPLYQVFENS--LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           D+  IELR+LA+++    L +VF +S  +DI   + ++  GV   KV  + R   K I +
Sbjct: 1   DFQSIELRLLANLSDDPDLLRVFNDSTSIDIFTKLTSQWLGVPPVKVDFKERERTKRIVY 60

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
           S+IYG+   RL   L +  +EA  +++ +  +FPGI+E+  K       NG+V TIF R+
Sbjct: 61  SVIYGVGRERLGNTLCVEPNEAKGFMESFLGKFPGINEFSRKCIEDCNTNGFVSTIFKRK 120

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIH 925
                I S    IR+  ER A+N  +QGSAAD+ + AMI +  +LE D  L  ++LLQIH
Sbjct: 121 RWIPHIKSRDFQIRSQAERQAVNFVVQGSAADLCKSAMIQIVHALEKDVSLKARLLLQIH 180

Query: 926 DELVFEVPEEEI 937
           DEL+ EV + +I
Sbjct: 181 DELLLEVADTDI 192


>gi|152981478|ref|YP_001351852.1| 5'-3' exonuclease [Janthinobacterium sp. Marseille]
 gi|151281555|gb|ABR89965.1| 5'-3' exonuclease [Janthinobacterium sp. Marseille]
          Length = 261

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 86/255 (33%), Positives = 134/255 (52%), Gaps = 22/255 (8%)

Query: 7   LFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L  +DG + + R + A      + K D    +++A F  +L           + +H    
Sbjct: 4   LLAIDGLNIVRRVYEANMEEDTAAKADAALRHSLASFRKLL--------NTHLPTHVLPA 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT- 123
           FD+   T+R+++YP Y+ NR  +PE+L  +LP   +     G+  + +   EADD+IAT 
Sbjct: 56  FDFGGHTWRHDLYPRYRENRAPMPEVLRERLPDFYVQLTELGLHVVSVPEVEADDVIATG 115

Query: 124 -YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              ++ E  G A+ I STDKDL  L+     ++D  K E  D + V  K+G+ PE +  L
Sbjct: 116 VLRWLGEGRGEAI-IASTDKDLHTLIEHGAVIWDHFKGEWHDSKWVESKFGVSPEMLTDL 174

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK----QKKRRENILEYAE 238
            AL GD  D+IPG+  +G KTAA LLQ YGN++ I+  A  +K    +K R++    Y  
Sbjct: 175 LALMGDVSDSIPGVSKVGVKTAAKLLQSYGNIDRIMAGAGILKDTLGEKLRKDKDQLY-- 232

Query: 239 TARLSRKLVMLRTDV 253
              +SR+LV L+ DV
Sbjct: 233 ---MSRQLVALKDDV 244


>gi|37524661|ref|NP_928005.1| exonuclease IX [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81420304|sp|Q7N8Q9|XNI_PHOLL RecName: Full=Protein Xni
 gi|36784086|emb|CAE12955.1| Exodeoxyribonuclease IX (5'-3' exonuclease) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 252

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             I    + L +L+Q+S      +H   
Sbjct: 3   HLLIVDALNLIRRIHAVQGSP------------CIPACEHALRQLIQHSHP----THAVA 46

Query: 64  IFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R++I PDYKA R  +P+ L  ++P +R + +  G+     +G EADD+ 
Sbjct: 47  VFDEENRNHSWRHQILPDYKAGRSPMPDNLQQEMPQIRASFEQQGVTCWHAKGHEADDLA 106

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ PE++  
Sbjct: 107 ATLAVKVTAAGHNVTIVSTDKGYCQLLSPNIRIRDYFQKRWLDMPFVQQEFGVLPEQLPD 166

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGI GIG KTAA LLQ+ G L+N+  +  + + +K R  +    E A 
Sbjct: 167 YWGLAGISSSKIPGIQGIGPKTAATLLQQAGTLDNLFQHLDQ-QPEKWRNKLESNQEIAF 225

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +SR++  LRTD+ +   L+ L L
Sbjct: 226 ISREVASLRTDLALKGNLQQLRL 248


>gi|294628456|ref|ZP_06707016.1| 5'-3' exonuclease [Streptomyces sp. e14]
 gi|292831789|gb|EFF90138.1| 5'-3' exonuclease [Streptomyces sp. e14]
          Length = 306

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 89/269 (33%), Positives = 141/269 (52%), Gaps = 26/269 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+++ R + + +      D
Sbjct: 5   LMLLDTASLYFRAYFGVPDSVRAPDGAPVNAVRGLLDFIDRLVKDHRPDRLVACMDA--D 62

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +    +R E+ P YKA+R            ++P+ L PQLP++     A GI  + + G+
Sbjct: 63  WRP-HWRVELIPSYKAHRVAEEHPGGPDEEEVPDTLSPQLPVIEAVLDAIGIARVGVAGY 121

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLYDT--VKEEKIDIEHVIK 170
           EADD+I T+T  A  +G  V I++ D+DL QLV        LY    V   +   E V++
Sbjct: 122 EADDVIGTFT--ARADG-PVDIVTGDRDLYQLVDDARGVRVLYPVKGVGTLQTTDEAVLR 178

Query: 171 -KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-- 227
            K+G+  +    L  L GD  D +PG+PG+G KTAA LL E+G+L  IL      K K  
Sbjct: 179 EKYGVDGKGYADLALLRGDPSDGLPGVPGVGEKTAAKLLAEFGDLAGILAAVDDPKAKLT 238

Query: 228 -KRRENILEYAETARLSRKLVMLRTDVPI 255
             +R+ + E      ++ K+V +  DVP+
Sbjct: 239 PAQRKRLDEARPYLAVAPKVVRVAADVPL 267


>gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/114 (51%), Positives = 80/114 (70%)

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            RR AK INF +IYG+S F LA QL IPR EA  Y+  YF R+PG+ +Y+E+T+
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLQYMERTR 114


>gi|75763377|ref|ZP_00743113.1| 5'-3' exonuclease [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74489139|gb|EAO52619.1| 5'-3' exonuclease [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 219

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 115/221 (52%), Gaps = 16/221 (7%)

Query: 7   LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LVDG + ++RAFYAT +     ++ DG P N I G+   L    Q        +H   
Sbjct: 4   VLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHIVT 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I T
Sbjct: 60  CWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGT 119

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPE 177
               Y  E E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 120 LAKQYCNEAE---VYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           ++V  +A  GD+ DN PG+ GIG KTA  L +  G +  +L
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLSRAXGTVSAVL 217


>gi|325989642|ref|YP_004249341.1| 5'-3' exonuclease [Mycoplasma suis KI3806]
 gi|323574727|emb|CBZ40383.1| 5\'-3\' exonuclease [Mycoplasma suis]
          Length = 278

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 141/274 (51%), Gaps = 22/274 (8%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNML------WKLLQNSRKESIASHFA 62
           L+DGSS IY+ F++  L + K    P      F N+L      W  L N       SH  
Sbjct: 10  LIDGSSLIYKCFFS--LDAEKKRDTP-EMKKKFMNLLLLQVRKWTTLNN------YSHGV 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI-QGFEADDII 121
           +IFD    +FR E+ P+YKANR  +P  LL  LP    A    G+  +   +G+EADD+ 
Sbjct: 61  MIFDIDRKSFRTELLPEYKANRDPMPPELLSWLPEAVSAVSETGLKVVYAPKGYEADDLA 120

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK----KWGIPPE 177
            T +    +  F V I +TD+D  QLV     +Y   K  +I++ + +       G+ P 
Sbjct: 121 GTISKSLSEYDFKVDIFTTDRDFFQLVDHLISVYRVGKSFQIEVNNHLNFSQLNEGLLPS 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIKQKKRRENILEY 236
           ++  L+AL+GD+ DN  GIP IG KTA  L+Q++   ENI +++   I+++K R++ILE 
Sbjct: 181 QIPLLKALSGDASDNYSGIPKIGPKTATKLIQQFKT-ENIFLSSLEEIQEEKLRQSILEN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
            E  +L  K+  ++TD+     +   +L     P
Sbjct: 240 EEQIKLFLKISRIKTDLDYKFEISDFLLGKPTTP 273


>gi|238751462|ref|ZP_04612954.1| Uncharacterized exonuclease xni [Yersinia rohdei ATCC 43380]
 gi|238710329|gb|EEQ02555.1| Uncharacterized exonuclease xni [Yersinia rohdei ATCC 43380]
          Length = 251

 Score =  129 bits (323), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 138/263 (52%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P ++    GL             +LLQ+S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCINACQHGLQ------------QLLQHSQ----PTHVVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    A ++R+   PDYKA R  +P+ L  ++P +R A  + G+      G EADD+ 
Sbjct: 48  VFDEDDRADSWRHHCLPDYKAGRSPMPDNLQQEMPQIRDAFMSLGVNCWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLAVKVSGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGVSPHQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAALLLQ+  +LE +      + +K R++ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTAALLLQQANSLEELYQGLDSVPEKWRKK-LQQHQEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           + +++  L+TD+P+   L+ L L
Sbjct: 227 ICKQIATLKTDLPLNGNLQQLRL 249


>gi|303289002|ref|XP_003063789.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454857|gb|EEH52162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 942

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 202/464 (43%), Gaps = 79/464 (17%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE-ENIYDLSG--EKFNLSSPKQ 628
           L+  +   +  +E  G+  D  +++  +  + + L S+E E    L G  +  NLSSP+Q
Sbjct: 479 LEGAIAAGLGTLESIGLPFDASVVEAAAVGLRRELSSIEAEASRSLPGRGQPLNLSSPQQ 538

Query: 629 LGDILFTKLKFPSGAK-----TKTGQWKTTAQDLEQINCGDN--PIIKNILEWRQLSK-- 679
           + D+L+  L FP  +       KT Q  T    L       N  P+   +L +R +++  
Sbjct: 539 VADVLYGFLGFPPPSSNAMQGAKTAQLTTKDDVLRDFASRPNAHPLPGMVLRYRAVTRAV 598

Query: 680 -IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI---KTDLGQK--- 732
            + + YA      +     R+   ++   T TGRL+S  PNLQ +         G++   
Sbjct: 599 AMCNAYAS-----LTDADGRLRCEWNNTRTATGRLSSSNPNLQAVGRAEHSAGAGEEELA 653

Query: 733 ---IRRAFISPPTKKLISADYSQIELRILAHIA---KITPLYQVFENSLDIHRMVAAEIF 786
              +R AF++PP K L++ DYSQIELR LAH+    K+  + +V  +  D+ +M+     
Sbjct: 654 TFNLRAAFVAPPGKVLLAVDYSQIELRTLAHLTRDEKLCGVLRVAGDGGDVFKMI----- 708

Query: 787 GVNIEK-------VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             N+ +       VS + R  AK   + ++YG     LA +L      A   I   F  F
Sbjct: 709 -WNLSRDAPRDAPVSAEDRDKAKRTVYGVLYGQGVAGLAEKLACSTDAAKGLIDALFRTF 767

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+  ++  TK   R     E   GR      I++  +S R   ER A+N  +QG+AAD+
Sbjct: 768 PGLKRFVVATKERARATKSAELPSGRHRPLPGIDAAAASARAEAERKAMNTLVQGTAADM 827

Query: 900 TRRAMI--------------------------SVHKSLEDHKLAT--KMLLQIHDELVFE 931
            + AM                             H  +      T  +++ QIHDEL+FE
Sbjct: 828 MKTAMARWFAAISPAPAASASASAISPGGAEGDAHADVRGKADPTRARLIAQIHDELLFE 887

Query: 932 VPEEEITTASQII--VHSMEKACLPK-INLRVPLKVNIKVSNNW 972
             +     A + +  V ++ K C+ +   + VP  V + V  +W
Sbjct: 888 CDD-----ARECVNRVAALAKVCMERAAKVSVPTPVKVSVGRDW 926


>gi|318059078|ref|ZP_07977801.1| 5'-3' exonuclease [Streptomyces sp. SA3_actG]
          Length = 309

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 93/300 (31%), Positives = 153/300 (51%), Gaps = 31/300 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R +++ + 
Sbjct: 1   MTQTPRLMLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDALVAC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPA 109
                D+    +R  + P YKA+R            ++P+ L PQ+P++     A GI  
Sbjct: 61  MDA--DWRP-EWRVSLIPSYKAHRVAEETETGPDEEEVPDTLSPQVPVIEAVLDALGIAR 117

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKID 164
           + + G+EADD+I T   +A +    V I++ D+DL QLV        LY    V   ++ 
Sbjct: 118 LGVPGYEADDVIGT---LATRAHGPVDIVTGDRDLFQLVDDARGVRVLYPLKGVGSLQVT 174

Query: 165 IEHVIK-KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN--- 220
            E +++ K+G+       L  L GD  D +PG+PGIG KTAA LL  YG+L+ I      
Sbjct: 175 DEALLREKYGVDGPGYADLATLRGDPSDGLPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 234

Query: 221 -ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
            AS+I   +RR  ++E A    ++  +V +  D+P+   L+  + ++   PR    L AL
Sbjct: 235 PASKITPAQRRR-LVESAPYLDVAPAVVRVARDIPVPEDLDERLPDE---PRDGEVLTAL 290


>gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1]
 gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1576

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 196/460 (42%), Gaps = 129/460 (28%)

Query: 580  VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY---DLS----------GEKFNLSSP 626
            +S ++  GI+I+ D  + +     ++L  L +NIY   DL            EKFN+ S 
Sbjct: 922  ISVIQSQGIKIEPDDYEFMKINFKRSLEELLKNIYNHPDLKPYIEEFEAKYKEKFNIQSA 981

Query: 627  KQLGDILFTKLKFPSGAKTKTGQW----------KTTAQDLEQINCGDNP-------IIK 669
            + L  + +  L+ P   KT T +           K    D+E  +  D         + +
Sbjct: 982  EHLTHMFYDYLQVPDKYKTFTDKGNIQMNESAIKKIKGIDIEDESIQDKKKVEIAKYLAE 1041

Query: 670  NILEWRQLSKIKSTYADSL-PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
              LE+R  SK+ S Y  S   N +      VH  Y    T+TGR++S EPN QNIP K D
Sbjct: 1042 KTLEYRTFSKLYSAYIQSYNKNDLIDTNYIVHPNYFTTGTVTGRMSSSEPNFQNIP-KGD 1100

Query: 729  LGQ--KIRRAFIS----------------PPTKKLISADYSQIELRILAHIAKITPLYQV 770
            L +  +++  F+S                P T  L+ ADYSQ+ELR+LA +++   L   
Sbjct: 1101 LPKEFQVKNIFVSRYLNSNKYFEDNDYKKPITGILLQADYSQMELRVLAMVSQDENLKNA 1160

Query: 771  FENSLDIHRMVAAEIFGVNI--------EKVSPQ-------------------------- 796
            F +  DIH   A  I G++          +++P+                          
Sbjct: 1161 FISGEDIHLATAKSITGMDYLSKDVDENTEITPEVKNLITKYKQYWGKEAENLTDKEILS 1220

Query: 797  --------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
                    +R+ AKT+NF I+YG++   LA ++ +   EA  +I++Y +  PG+  YI  
Sbjct: 1221 KIAHDTEVIRKKAKTVNFGIVYGMTAAGLAERINVSLKEAEKFIEQYLNALPGVQNYIIT 1280

Query: 849  TKNFVRQNGYVETIFGRR-----------------IHY-DEI---NSPKSSIRNINE--- 884
             +   ++ GYVETI+ R+                  HY D++   N+P+      N    
Sbjct: 1281 KQTKAKEKGYVETIWNRKRNLLNAKVYLHDIEQIIKHYKDKLYSKNTPEEDKLFYNNIIY 1340

Query: 885  -------------RAAINAPIQGSAADITRRAMISVHKSL 911
                         R +INAPIQG A+D T  ++I ++ + 
Sbjct: 1341 GLKQMYYVGTKSLRQSINAPIQGGASDFTFVSLICLNHAF 1380


>gi|34763058|ref|ZP_00144032.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887284|gb|EAA24381.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 286

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 132/261 (50%), Gaps = 17/261 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + + +A+ F V     
Sbjct: 6   LLDVSAIMYRAYFANINFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +   R EIY DYK+NR   PE L+ Q+P +     AF I   +I G+EADD++ +     
Sbjct: 61  SSLKRTEIYGDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIDGYEADDVLGSLAKKI 120

Query: 129 EKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
            K+   V II+ DKDL QLV        L    + EK  I    + V+   G+ PEK+  
Sbjct: 121 AKQDIEVIIITGDKDLSQLVERNISVALLGKGTEGEKFGILKNSDDVVNYLGVVPEKIPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236
           L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +N++  
Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYENIDNLKNIDGIGPSLIKNLVNE 240

Query: 237 AETARLSRKLVMLRTDVPITI 257
            + A +SR+L  + TD+ IT+
Sbjct: 241 KDIAFMSRELAKIFTDLDITV 261


>gi|332160581|ref|YP_004297158.1| exonuclease IX [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318606941|emb|CBY28439.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664811|gb|ADZ41455.1| exonuclease IX [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 251

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 136/261 (52%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R       +    D   VNA    C      LQ     S  +H   +F
Sbjct: 4   HLLIVDALNLIRR-------IHAVQDSPSVNA----CQ---HALQQLISHSQPTHAVAVF 49

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++  PDYKA R  +P+ L  ++PL+R A  + G+      G EADD+ AT
Sbjct: 50  DEDDRSDSWRHQSLPDYKAGRSPMPDNLQQEMPLIREAFNSLGVNCWSSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 110 LAIKIGEAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG KTAALLLQ+  +LE +      + +K R++ + ++ E A + 
Sbjct: 170 GLAGISSSKIPGVAGIGAKTAALLLQQASSLEELYQELDSVPEKWRKK-LQQHQEMAFIC 228

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+ D+P++  L+ L L
Sbjct: 229 KQIATLKADLPLSGNLQQLRL 249


>gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
 gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
          Length = 682

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 148/629 (23%), Positives = 270/629 (42%), Gaps = 92/629 (14%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q P    +   I    D++    +L         + T  +D    +P  +++ST  ++D 
Sbjct: 120 QTPQTPQASQLITRPSDLEALPPRLMAAPVLGLDLETTGLDPHQDRPRLLSLST--ERD- 176

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF-LKIGHNIKYDKLVLHR 478
                 T  +DL                  L  L+  FE +   + +GHN+K+D   L +
Sbjct: 177 ------TYLVDLFA------------LPHALEALRPLFEAKTGPVLVGHNLKFDLAFLLK 218

Query: 479 YGISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            G+   G       L   V+ +      +A +           + K  ++S     IS++
Sbjct: 219 AGLWPEGRRLWCTGLAHQVIHARSRMPALADLVPG--------LDKRLQTSDWSGPISEA 270

Query: 537 QVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           Q+  +A  ++ V+L L+   +    +L + K+L +  R     +  V+ M + G+  + +
Sbjct: 271 QLA-YAARDTQVLLPLYHQQQEESRRLGIGKVLEIESR----ALPAVAWMGLMGVPFNPE 325

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
                + E     LS +E +  L   + N  SPKQ+ + L       +G +    + +T 
Sbjct: 326 RWLATAKEAE---LSAQEALKRLDW-RTNWDSPKQVLEALRR-----AGIELSDTREETL 376

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           ++  E      +P +  +L +R+  K +STY  +   +++  T R+H  +      +GR+
Sbjct: 377 SRHRE------HPTVAALLAYREHRKRQSTYGAAWLENLHPLTGRIHPSWQQIGAESGRM 430

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +   PNLQ +P +       R  F +P  + LI ADYSQIELR+ A IA    + + FE 
Sbjct: 431 SCSRPNLQQVPREP----AYRACFQAPGGRVLIKADYSQIELRLAAQIAGEKRMLEAFEQ 486

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQM--RRHAKTINFSIIYGISPFRLATQLR------IPR 825
             D+H + A  + G    K  P    R+ AK +NF ++YG+    L T  R      +  
Sbjct: 487 GEDLHTLTARLVTG----KAEPSREDRQLAKALNFGLLYGMGSEGLRTYARANYGLELSP 542

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE--TIFGRRIHYDEINSPKSSIRNIN 883
            EA    + +F  +PG+  +     +  +  G VE  T+ GRR         + + R   
Sbjct: 543 QEAEALREAFFRAYPGLRAW-----HRHQPEGEVEVRTLAGRR---------RVTGRYTE 588

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           +   +N P+QGS AD  +  +  +++S +        +L +HDE+V E P + ++ A   
Sbjct: 589 K---LNTPVQGSGADGLKLTLALLYESRQKAP-GCFPVLAVHDEIVIEAPADGVSAAYAW 644

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +  SM +  +  I  +VP+ V + V  +W
Sbjct: 645 LTRSMREG-MEAILTKVPVLVEVGVCEDW 672


>gi|268590545|ref|ZP_06124766.1| exodeoxyribonuclease IX [Providencia rettgeri DSM 1131]
 gi|291313932|gb|EFE54385.1| exodeoxyribonuclease IX [Providencia rettgeri DSM 1131]
          Length = 266

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 115/207 (55%), Gaps = 3/207 (1%)

Query: 58  ASHFAVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           A+H   +FD      ++R+E  PDYKA R  +PE L  +LP +    +  G+   + +G 
Sbjct: 41  ATHIVAVFDEEGRHQSWRHEKLPDYKAGRQPMPEDLHAELPTLIALFKEKGVHCWQSEGD 100

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADD+ AT        G  VTI+STDK   QL+SP   + D  ++  +DI  + K++G+ 
Sbjct: 101 EADDLAATLATRIAGSGHTVTIVSTDKGYCQLLSPNLRIRDYFQKRWLDIPFIEKEFGVS 160

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P ++     L G S   +PG+ GIG K+A  LLQ+Y ++ENI  N   +++K +++ ++ 
Sbjct: 161 PNQLPDYWGLAGISSSKVPGVAGIGPKSATTLLQQYHSIENIFANLDNLEEKWQKK-LIN 219

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL 262
             E A + R +  LRTD+PI   L  L
Sbjct: 220 QQEIALICRDIATLRTDIPIRGNLNQL 246


>gi|255551068|ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis]
 gi|223544402|gb|EEF45923.1| DNA polymerase theta, putative [Ricinus communis]
          Length = 2154

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 127/238 (53%), Gaps = 22/238 (9%)

Query: 734  RRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVN 789
            R  FI  PT++   L++ADYSQIELR++AH +K   L ++      D+  ++AA   G  
Sbjct: 1873 REFFI--PTQENWLLLTADYSQIELRLMAHFSKDASLIELLSKPHGDVFTIIAARWTGKA 1930

Query: 790  IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
             E V+   R   K + + I+YG+    LA QL     EAA+ IK +   FPG+  ++ + 
Sbjct: 1931 EESVASLERDQTKRLVYGILYGMGANTLAQQLECSSDEAAEKIKSFKSCFPGVASWLHEA 1990

Query: 850  KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
                R+NGYVET+ GR+    +I    S  ++  +R A+N+  QGSAAD+ + AMI+++ 
Sbjct: 1991 VASCRKNGYVETLKGRKRFLSKIKFGNSKEKSKAQRQAVNSICQGSAADLIKIAMINIYS 2050

Query: 910  SLE-------DHKLATK---------MLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
             +           LATK         +LLQ+HDELV EV    I  A+ ++   ME A
Sbjct: 2051 VIARVDGPDPSSSLATKFHMLKGRCRILLQVHDELVLEVDPPVIKEAASLLQAGMENA 2108



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 4/89 (4%)

Query: 552  LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
            LW LL    I E L+   ++++ P+++V++ ME+ GI +D +   +    + K L  LE+
Sbjct: 1687 LWKLL----ISEGLVEALKKIEMPLVNVLADMELWGIGVDMEACLRARNVLGKKLRHLEK 1742

Query: 612  NIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
              Y+L+G  F+L +   + ++L+ +LK P
Sbjct: 1743 KAYELAGMTFSLYTAADIANVLYGRLKLP 1771


>gi|291461228|ref|ZP_06600301.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378193|gb|EFE85711.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 370

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 141/293 (48%), Gaps = 20/293 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D S+ +YRA++A      K++  P  A+ GF N L  ++    KE    + A  FD  
Sbjct: 6   LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSII----KEFNPDYMAAAFDVK 59

Query: 69  AVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
             +  R EIY DYK+NR   PE L+ Q+P +     AF I    I+ +EADD++ +    
Sbjct: 60  RSSLKRTEIYADYKSNRQSTPEDLVAQIPRIEEVLDAFNINRYRIESYEADDVLGSIAKK 119

Query: 128 AEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKEEKIDI----EHVIKKWGIPPEKMV 180
             K+   V I++ DKDL QLV        L    + EK  +    E V+   G+ PEK+ 
Sbjct: 120 IAKDDLEVIIVTGDKDLSQLVEKNITIALLGKGAEGEKFGMLRTAEDVVNYLGVVPEKIP 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-----RENILE 235
            L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K  +       +N+  
Sbjct: 180 DLFGLIGDKSDGIPGVTKIGEKKALAIFSKYDSLEKIYENIDDLKNIEGIGPSLIKNLTN 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             + A LSR+L  + T++ I    E+L     +  +L    K LEF   I ++
Sbjct: 240 EKDIAFLSRELAKIFTNLDINADEENLKYS-MDKEKLYELCKVLEFKMFIKKL 291


>gi|145300082|ref|YP_001142923.1| exodeoxyribonuclease IX [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|156630377|sp|A4SQK3|XNI_AERS4 RecName: Full=Protein Xni
 gi|142852854|gb|ABO91175.1| exodeoxyribonuclease IX [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 265

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 89/263 (33%), Positives = 132/263 (50%), Gaps = 16/263 (6%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAI----AGFCNMLWKLLQNSRKESIAS 59
           HL ++D  + I R  A  A   L+      P  A+    A   N   KLL  S      +
Sbjct: 3   HLLIIDALNLIRRLHAVQAQQALT------PAQALIATRANLINTCRKLLTGSE----PT 52

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H   +FD    ++R E+YP YK  R  +P  L   L  ++ A    G+ A+  Q  EADD
Sbjct: 53  HVIAVFDGEIHSWRKEVYPAYKEGRTPMPVELREGLNTLQDAFWECGVDALLSQTDEADD 112

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT      + G   TIISTDK   QL+ P   + D   +  +D   V +++G+ P ++
Sbjct: 113 LIATLASGIAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAFVEQQYGVVPAQL 172

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V   ALTG S  NI G+PGIG KTA  LLQ+YG+L  +L    + +  K    + +Y + 
Sbjct: 173 VDFWALTGISGSNIKGVPGIGPKTATQLLQQYGSLSALLAACQQEEASKPLLKLRQYQDD 232

Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262
           A L+++LV L+ D+P+   L  +
Sbjct: 233 ALLAQRLVRLQRDIPLGFNLREI 255


>gi|330830776|ref|YP_004393728.1| hypothetical protein B565_3076 [Aeromonas veronii B565]
 gi|328805912|gb|AEB51111.1| hypothetical protein B565_3076 [Aeromonas veronii B565]
          Length = 266

 Score =  127 bits (319), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 89/263 (33%), Positives = 131/263 (49%), Gaps = 16/263 (6%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAI----AGFCNMLWKLLQNSRKESIAS 59
           HL ++D  + I R  A  A   L+      P  A+    A   N   KLL NS      +
Sbjct: 7   HLLIIDALNLIRRLHAVQAQQALT------PAQALVATRANLINTCRKLLANSE----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H   +FD    ++R E+YP YK  R  +P  L   L  ++ A    G+ A+  +  EADD
Sbjct: 57  HVIAVFDGEVHSWRKEVYPAYKEGRTPMPLELREGLATLQDAFWECGVDALLSETDEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT        G   TIISTDK   QL+ P   + D   +  +D   V +++G+ P ++
Sbjct: 117 LIATLASGIASHGHQATIISTDKGFCQLICPQIRVRDYFNKRWLDAAFVQQQYGVAPAQL 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V   ALTG S  NI G+PGIG KTA  LLQ+YGNL  +L    +    K    + ++ + 
Sbjct: 177 VDFWALTGISGSNIKGVPGIGPKTATQLLQQYGNLAAMLEACQQEDAAKPLLKLRQHKDE 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262
           A L+++LV L+ D+P+   L  +
Sbjct: 237 ALLAQRLVHLQRDIPLGFNLRDI 259


>gi|302561571|ref|ZP_07313913.1| 5'-3' exonuclease [Streptomyces griseoflavus Tu4000]
 gi|302479189|gb|EFL42282.1| 5'-3' exonuclease [Streptomyces griseoflavus Tu4000]
          Length = 306

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 89/269 (33%), Positives = 140/269 (52%), Gaps = 26/269 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+++ R + + +     + 
Sbjct: 5   LMLLDTASLYFRAYFGVPESVRAPDGTPVNAVRGLLDFIDRLVKDHRPDQLVACMDADWR 64

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
            P   +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + + G+
Sbjct: 65  -PG--WRVELIPSYKAHRVAEERAAGPDEEEVPDTLSPQVPVIESVLDAVGIARVGVAGY 121

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKIDIEHVIK 170
           EADD+I T+T  A   G  V I++ D+DL QLV        LY    V   +I  E V++
Sbjct: 122 EADDVIGTFT--ARAAG-PVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQITDEAVLR 178

Query: 171 -KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-- 227
            K+G+  +    L  L GD  D +PG+PGIG KTAA LL E+G+L  IL      + K  
Sbjct: 179 EKYGVDGKGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGILAAVDDRQAKLT 238

Query: 228 -KRRENILEYAETARLSRKLVMLRTDVPI 255
             +R  + E      ++ K+V +  DVP+
Sbjct: 239 PSQRRRLDEARPYLAVAPKVVRVADDVPL 267


>gi|254385029|ref|ZP_05000363.1| 5'-3' exonuclease [Streptomyces sp. Mg1]
 gi|194343908|gb|EDX24874.1| 5'-3' exonuclease [Streptomyces sp. Mg1]
          Length = 301

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 92/270 (34%), Positives = 139/270 (51%), Gaps = 32/270 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  YRA++  P   +  DG PVNA+ G  + + +L+Q+ R + + +      D+ 
Sbjct: 2   LLDTASLYYRAYFGVPDSVKAPDGTPVNAVRGLLDFIGRLVQDHRPDDLVACMDA--DWR 59

Query: 69  AVTFRNEIYPDYKANRPKI-----------PEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
              +R E+ P YKA+R  +           P+ L PQ+P++  A  AFGI  + + G+EA
Sbjct: 60  P-QWRVELIPSYKAHRVAVETETGPDLEDTPDTLAPQVPIIEAALDAFGIARVGVAGYEA 118

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKIDIEHVIK-K 171
           DD+I T T  A   G  V I++ D+DL QLV        LY    V   ++  E  ++ K
Sbjct: 119 DDVIGTLT--ARASG-PVDIVTGDRDLYQLVDDARGRRVLYPLKGVGTLQVTDEAWLREK 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIK---- 225
           +G+       L  L GD  D +PG+PGIG KTAA LL  YGNL  I+  I+  R +    
Sbjct: 176 YGVDGPGYADLALLRGDPSDGLPGVPGIGEKTAAKLLDAYGNLAGIIAAIDDPRSRLTAT 235

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPI 255
           Q+KR +    Y   A     +V + +DVP+
Sbjct: 236 QRKRLDESRPYLAVA---PTVVKVASDVPL 262


>gi|56963870|ref|YP_175601.1| 5'-3' exonuclease [Bacillus clausii KSM-K16]
 gi|56910113|dbj|BAD64640.1| 5'-3' exonuclease [Bacillus clausii KSM-K16]
          Length = 302

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 139/267 (52%), Gaps = 18/267 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT----PL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M  E  L LVDG + + R ++AT    P+  L R  +GL VN +  F   L+KL+ +   
Sbjct: 1   MANEQALLLVDGFNLLSRGYFATSYNRPIEKLERNDEGLYVNGLRVFIQKLFKLVTDYS- 59

Query: 55  ESIASHFAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
               SH  V +D P     R + +PDYK  R ++PE L+ Q           G+  +++ 
Sbjct: 60  ---ISHCIVTWDVPREEALRRKTFPDYKLTRNELPEPLIQQYQQCVKTLSYIGVEQLKVP 116

Query: 114 GFEADDIIATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK 171
            +EADDII   +  + AE  G    I S DKDL QL+S  T      K+ ++  +    K
Sbjct: 117 PYEADDIIGAISAKWEAETSG-PCYIYSNDKDLFQLLSSRTTQIVAKKQTEVLFDEASFK 175

Query: 172 --WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--K 227
             +G+ P + V ++AL GD+ DNIPG PGIG KTA  L+  YG++E++      I+   K
Sbjct: 176 ASYGLSPTQWVDVKALVGDTSDNIPGCPGIGEKTALPLIAAYGSIESLYQQIDTIQPPLK 235

Query: 228 KRRENILEYAETARLSRKLVMLRTDVP 254
           + ++ +L    + +LS+KL  +  D+P
Sbjct: 236 RAQKKLLAGQASTQLSKKLSAIICDIP 262


>gi|90020805|ref|YP_526632.1| exodeoxyribonuclease IX [Saccharophagus degradans 2-40]
 gi|89950405|gb|ABD80420.1| 5'-3' exonuclease [Saccharophagus degradans 2-40]
          Length = 289

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 112/204 (54%), Gaps = 6/204 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+D S + ++ ++A P      +G P   + G+ N L ++L +       S+ A  FD
Sbjct: 5   VYLIDVSIYFFKYYFALPDNWWSEEGNPTAGVYGYANWLKRMLADLN----PSYIAACFD 60

Query: 67  YPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               T FRN+IYPDYK +R    ++L  QL   R  T+A GIP       EADD++ T  
Sbjct: 61  ESLTTCFRNDIYPDYKCSRVLPDDLLAFQLAASRQVTEALGIPCYASATHEADDLLGTLA 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             A  +G  V ++S DKDL QL+   T  L+D      +    + +K G+ PE++V L A
Sbjct: 121 VRAASKGLEVCVLSRDKDLSQLIGCETAQLWDYPDGIPMKRAQIHEKLGVWPEQVVDLLA 180

Query: 185 LTGDSIDNIPGIPGIGYKTAALLL 208
           L GD  D+IPG+PG+G KTAA LL
Sbjct: 181 LVGDVGDDIPGVPGVGVKTAAQLL 204


>gi|302518090|ref|ZP_07270432.1| 5'-3' exonuclease [Streptomyces sp. SPB78]
 gi|302426985|gb|EFK98800.1| 5'-3' exonuclease [Streptomyces sp. SPB78]
          Length = 312

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 151/294 (51%), Gaps = 31/294 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R +++ +      D
Sbjct: 10  LMLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDALVACMDA--D 67

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +    +R  + P YKA+R            ++P+ L PQ+P++     A GI  + + G+
Sbjct: 68  WRP-EWRVSLIPSYKAHRVAEETETGPDEEEVPDSLSPQVPVIEAVLDALGIARLGVPGY 126

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKIDIEHVIK 170
           EADD+I T   +A +    V I++ D+DL QLV        LY    V   ++  E +++
Sbjct: 127 EADDVIGT---LATRAHGPVDIVTGDRDLFQLVDDARGVRVLYPLKGVGSLQVTDEALLR 183

Query: 171 -KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----ASRIK 225
            K+G+       L  L GD  D +PG+PGIG KTAA LL  YG+L+ I       AS+I 
Sbjct: 184 EKYGVDGPGYADLATLRGDPSDGLPGVPGIGEKTAAKLLAAYGDLDGIRAAAADPASKIT 243

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
             +RR  ++E A    ++  +V +  D+P+   L+  + ++   PR    L AL
Sbjct: 244 PAQRRR-LVESAPYLDVAPAVVRVARDIPVPEDLDERLPDE---PRDGEVLTAL 293


>gi|118469848|ref|YP_888174.1| 5'-3' exonuclease [Mycobacterium smegmatis str. MC2 155]
 gi|118171135|gb|ABK72031.1| 5'-3' exonuclease [Mycobacterium smegmatis str. MC2 155]
          Length = 338

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 153/316 (48%), Gaps = 34/316 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG+S  +R+++  P   +  DG PVNA+ GF + +  L+   +   +        D
Sbjct: 24  ILLLDGASMWFRSYFGVPSSIKAPDGRPVNAVRGFIDAISTLVTREKPRRL---VVCRDD 80

Query: 67  YPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
                +R ++ P YKA+R             ++P+ L PQ+ ++     AFGIP     G
Sbjct: 81  DWRPQWRVDLIPSYKAHRVAEPEPDGVPDIEEVPDDLTPQVNMILELLDAFGIPTAGAAG 140

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV----SPTT-CLY---DTVKEEKIDIE 166
           FEADD++ T +  A +E   V ++S D+DL+QLV    +P    LY      K  K    
Sbjct: 141 FEADDVLGTLS--AREERDPVVVVSGDRDLLQLVRDEPAPQVRVLYLGRGLAKATKWGPA 198

Query: 167 HVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V +++G+P ++       L  L GD  D +PG+ GIG KTAA LL ++G+L+NIL  A 
Sbjct: 199 EVAEQYGVPLDRAGTAYAELALLRGDPSDGLPGVAGIGEKTAASLLAKHGSLQNILDAAH 258

Query: 223 RIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLK 277
             K    K  R  +L   +    +  +V + TD P+T   P + L L   +  R+     
Sbjct: 259 DPKSGLSKAHRTKLLGAVDYIAAAETVVRVATDAPVTFSTPTDTLPLAAGDPARVAELAA 318

Query: 278 ALEFTKLINRVATTYD 293
           A   +  I+R+ T  D
Sbjct: 319 AYGVSSSISRLQTALD 334


>gi|271499485|ref|YP_003332510.1| 5'-3' exonuclease, SAM-fold domain-containing protein [Dickeya
           dadantii Ech586]
 gi|270343040|gb|ACZ75805.1| 5'-3' exonuclease, SAM-fold domain protein [Dickeya dadantii
           Ech586]
          Length = 253

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD          A  L+ R H     + +    + L +LLQ+SR     +H   +F
Sbjct: 4   HLLIVD----------ALNLIRRIHAVQGSSCLTACQHALNQLLQHSR----PTHAVAVF 49

Query: 66  D--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D  +   ++R+++ P+YKA R  +PE L  +LP +R A  A G+ +    G EADD+ AT
Sbjct: 50  DDEHRDQSWRHQLLPEYKAGRAPMPENLSYELPQIREAFLALGVASWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                  +G   TI+STDK   QL++PT  + D  ++  +D+  + +++G+ P ++    
Sbjct: 110 LASKVAAQGHQATIVSTDKGYCQLLAPTLRIRDYFQKRWLDVPFIQQEFGVQPAQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG KTAA LLQ+ G+LE +     +I +K RR+ +    E A   
Sbjct: 170 GLAGISSSKIPGVSGIGPKTAAQLLQQAGSLEALYQQLEQIPEKWRRK-LESQQEMAYRC 228

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           R++  LRTD+ +   L+ L L
Sbjct: 229 RQVATLRTDLVLNGNLQQLRL 249


>gi|119775554|ref|YP_928294.1| exonuclease IX [Shewanella amazonensis SB2B]
 gi|156630383|sp|A1S8B8|XNI_SHEAM RecName: Full=Protein Xni
 gi|119768054|gb|ABM00625.1| 5'-3' exonuclease [Shewanella amazonensis SB2B]
          Length = 253

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 136/258 (52%), Gaps = 11/258 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L ++DG + + R   A P      D L  + +A  C    KLL+  +     +H A++
Sbjct: 2   NRLLIIDGLNLVRRIHAALPD-EGDMDTL-YDRVAQACR---KLLRGHQ----PTHCAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D  A+++R  +Y DYK  R  +PE L   LP ++   +   + ++     EADDIIAT 
Sbjct: 53  WDGDAISWRKHLYEDYKKGRKPMPEALAKGLPALKTKLETLDVHSVNADS-EADDIIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                  G    I+STDK L+QL+SP    +D    +  DIE    K GI   +++   A
Sbjct: 112 ACKLAATGGEAIIVSTDKGLLQLMSPHIRQWDHFAGQFFDIEAFEAKLGIERHQLLDYIA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGIPGIG K+A+ LL+ Y +L N+  +   +  ++  + + E  + ARLS 
Sbjct: 172 LCGDSGNKIPGIPGIGPKSASELLRTYRSLANLYHSLGTLGSRQANK-LREGRDMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHL 262
           KL  L+T++P+ + L  L
Sbjct: 231 KLAKLQTELPLHLKLSDL 248


>gi|307129810|ref|YP_003881826.1| Ssb-binding protein [Dickeya dadantii 3937]
 gi|306527339|gb|ADM97269.1| Ssb-binding protein [Dickeya dadantii 3937]
          Length = 253

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 140/263 (53%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P L+               + L +L+Q+S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCLTACQ------------HALGQLIQHSQ----PTHAVA 47

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R+++ P+YKA R  +PE L  +LP +R A  A G+ +    G EADD+ 
Sbjct: 48  VFDDEQRDQSWRHQLLPEYKAGRAPMPENLSQELPQIRDAFLALGVDSWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT       +G   TI+STDK   QL++PT  + D  ++  +D+  + +++G+ PE++  
Sbjct: 108 ATLACKVAAQGHQATIVSTDKGYCQLLAPTIRIRDYFQKRWLDVPFIQQEFGVQPEQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAA LLQ+ G+LE +     +I +K RR+ +    + A 
Sbjct: 168 YWGLAGISSSKIPGVSGIGPKTAAQLLQQAGSLEALYQQLEQIPEKWRRK-LESQQDMAY 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
            SR++  LRTD+ +   L+ L L
Sbjct: 227 RSREVATLRTDLVLNGNLQQLRL 249


>gi|255579458|ref|XP_002530572.1| DNA polymerase I, putative [Ricinus communis]
 gi|223529871|gb|EEF31802.1| DNA polymerase I, putative [Ricinus communis]
          Length = 246

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 108/191 (56%), Gaps = 5/191 (2%)

Query: 70  VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE 129
           + FR+ +YP YK+NRP  P+ ++  L  ++ + +A  I  IE+ G EADD+I T    + 
Sbjct: 1   MNFRHTLYPSYKSNRPPTPDTIIQGLQYLKASIRAMSIKVIEVPGVEADDVIGTLATRSV 60

Query: 130 KEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWG-IPPEKMVCLQA 184
             GF V ++S DKD  Q++SP+  L              +E   K +G + P + V + A
Sbjct: 61  DAGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFEMVSFGMEDFAKLYGELRPSQFVDVMA 120

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD  DNIPG+ GIG   A  L+ ++G LEN+L    +++ ++ RE +   A+ A LS+
Sbjct: 121 LMGDKSDNIPGVEGIGTVYAVELITKFGTLENLLECVDKVEGQRIREALKANADQAVLSK 180

Query: 245 KLVMLRTDVPI 255
            L +LR+D+P 
Sbjct: 181 NLALLRSDLPF 191


>gi|157962794|ref|YP_001502828.1| exonuclease IX [Shewanella pealeana ATCC 700345]
 gi|189030097|sp|A8H6V6|XNI_SHEPA RecName: Full=Protein Xni
 gi|157847794|gb|ABV88293.1| 5'-3' exonuclease [Shewanella pealeana ATCC 700345]
          Length = 256

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 141/260 (54%), Gaps = 15/260 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L ++DG + + R   A P  S    GL    + G C  L K         I +H A++
Sbjct: 2   NKLLIIDGMNLVRRIHAAQPNES-DITGLK-ERVHGACRKLLKY-------HIPTHAAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D  A+++R  ++PDYK  R  +PE L   L  ++       I +++    EADD+IAT 
Sbjct: 53  WDGDAISWRKTLFPDYKKGRKPMPEALANGLNDIKAYLAEHHIHSVDADS-EADDVIATL 111

Query: 125 -TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            T +   +G A+ I+STDK   QL  P   L+D   +  + IE + KK GI   +++   
Sbjct: 112 ATKLVNIDGEAI-IVSTDKGFSQLNHPKIKLWDHFNQTYLTIEEMEKKLGIERSQLIDYL 170

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ETARL 242
           AL GDS + IPG+PGIG K+A  LL+ Y +L +I  +  ++  K+ ++  LE   + ARL
Sbjct: 171 ALAGDSGNKIPGVPGIGPKSAVELLRIYRSLASIYNSIDKVGAKQAKK--LEAGKQMARL 228

Query: 243 SRKLVMLRTDVPITIPLEHL 262
           S KLV L+TD+P+++ L+  
Sbjct: 229 SYKLVQLKTDMPLSVNLKQF 248


>gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 374

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 145/289 (50%), Gaps = 31/289 (10%)

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T R+H+ +      TGR++S +PNLQNIP       ++R  F       +I ADYSQIEL
Sbjct: 108 TVRIHSQFRQIGAPTGRMSSSKPNLQNIP------PELRVLFRPSKGYSMIVADYSQIEL 161

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RI A       +   F+   D+HR  A+ I G + E+++ + R+ AK INF +IYGISP 
Sbjct: 162 RIAAEYTNDEVMINAFKEGKDLHRFTASLITGKSYEEITKEERQLAKAINFGLIYGISPR 221

Query: 816 RLATQLR------IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY--VETIFGRRI 867
            L    R      I   EA D+  ++F  + G  ++ E+TK  + ++    V+++ GRR+
Sbjct: 222 SLMEYARNNYGVDISLKEAQDFHDKFFQHYRGFKKWHEETKEKLNKHRQITVQSLLGRRM 281

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
                              A+N PIQ S +D+ + A+       +D  L   ++  +HDE
Sbjct: 282 KVSRFTD------------AVNYPIQASGSDMLKMAVNFFGILKKD--LNAYIVNLVHDE 327

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINL-RVPLKVNIKVSNNWQEE 975
           ++ E  E+    A  I+  SM+KA   KI L +VP++    +  +W E+
Sbjct: 328 IIVEAKEDITVQAKNILEESMKKAG--KILLKKVPVEYEANIVKSWAEK 374


>gi|296104468|ref|YP_003614614.1| exonuclease IX [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058927|gb|ADF63665.1| exonuclease IX [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 264

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 49  LQNSRKESIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           L+   + S  +H   +FD  A    +R++  PDYKA R  +P+ L  ++P++R A +  G
Sbjct: 46  LEQLIRHSEPTHVVAVFDDEARNSGWRHQRLPDYKAGRAPMPDDLHSEMPMIRSAFEKRG 105

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +P    QG EADD+ AT        G   TI+STDK   QL+SPT  + D  ++  +D  
Sbjct: 106 VPCWGAQGNEADDLAATLAVKVASAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAP 165

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            +  ++G+ PE++     L G S   +PG+ GIG K+AA LL ++ NLE I      + +
Sbjct: 166 FIASEFGVSPEQLPDYWGLAGISSSKVPGVAGIGPKSAAQLLTDFQNLEGIYARLDEVPE 225

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           K R++ +  + E A + R +  L+TD+ +   L+ L LE
Sbjct: 226 KWRKK-LEAHKEMAFICRDVATLQTDLQLDGNLQQLRLE 263


>gi|289772665|ref|ZP_06532043.1| 5'-3' exonuclease [Streptomyces lividans TK24]
 gi|289702864|gb|EFD70293.1| 5'-3' exonuclease [Streptomyces lividans TK24]
          Length = 306

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 89/271 (32%), Positives = 136/271 (50%), Gaps = 30/271 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+++ R E    H     D
Sbjct: 5   LMLLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLDFIDRLVKDHRPE----HLVACMD 60

Query: 67  YP-AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
                 +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + + G
Sbjct: 61  ADWRPHWRVELIPSYKAHRVAEERPAGPDAEEVPDTLSPQVPVIEAVLDALGIARVGVAG 120

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLYDTVKE----EKIDIEH 167
           +EADD+I TYT  A   G  V I++ D+DL QLV        LY  VK       +D   
Sbjct: 121 YEADDVIGTYT--ARATG-PVDIVTGDRDLYQLVDDARGVRVLY-PVKGVGTLNLVDEAA 176

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           + +K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  I       K +
Sbjct: 177 LREKYGVDGAGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIQAAVDDPKAR 236

Query: 228 ---KRRENILEYAETARLSRKLVMLRTDVPI 255
               +R+ + E      ++ K+V +  DVP+
Sbjct: 237 LTPTQRKRLTEAGPYLAVAPKVVRVAADVPL 267


>gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 536

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 154/315 (48%), Gaps = 28/315 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQ--NSRKESIASHFAVI 64
           L ++D  +  YRAFY+ P      DG PVNA+ G  + +  L    N+ +   AS  A  
Sbjct: 4   LVIIDTPALYYRAFYSVPSSLTSSDGTPVNALRGTLDAIATLATRLNTTRFIAASDAAW- 62

Query: 65  FDYPAVTFRNEIYPDYKANRPK-------IPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                 TFR +I P YKA+R +        P+ L+PQ+PL+  A    G+P   I+  EA
Sbjct: 63  ----RPTFRTQIVPAYKAHREREDKPGTETPDELIPQIPLIYQACTLLGMPVGHIEDTEA 118

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKE--EKIDIEHVIKKW 172
           DD+I +   +  +    +T++S D+DL+ L+SP    T L    +   E+  I  + + +
Sbjct: 119 DDVIGS---VVRQWDGPITVVSPDRDLLSLLSPDKQVTLLRPRPRGQWEETTIHDLPELY 175

Query: 173 GIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-IK----Q 226
           G+P  ++   L AL GD  D + G  GIG KTAA LL  YG L+N+   A R +K     
Sbjct: 176 GVPNGQRYRELAALRGDPSDGLEGATGIGEKTAAKLLAGYGTLDNVFEAAKRGVKDHGLS 235

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            KRREN+LE  +  R + +++ + TD+ +   +E       N   L  F +     + I 
Sbjct: 236 PKRRENLLEAEDAVRKNVEVMTVLTDLDVGNLIEASATITPNIAGLEDFAQCYGVERSIG 295

Query: 287 RVATTYDCDAANIEP 301
           R+  T+   A    P
Sbjct: 296 RLTDTFTSHAPQKAP 310


>gi|293363788|ref|ZP_06610529.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma alligatoris
           A21JP2]
 gi|292552654|gb|EFF41423.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma alligatoris
           A21JP2]
          Length = 292

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 144/271 (53%), Gaps = 18/271 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           ++   L+DG+  ++++FYAT       + +   G+  N I  F   L+ LL + + + I 
Sbjct: 2   KDKFLLIDGNLMLFQSFYATYNPNNSYVMQSQSGITTNGIYQFFRTLYNLLNSVKPKYIF 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
               + FD    T R+ IYP+YKA R K PE++  Q    +       IP+ EI G EAD
Sbjct: 62  ----IAFDAKEKTNRHLIYPEYKAGRRKAPEIIFEQFHYTKELLSKLNIPSSEINGAEAD 117

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLY-DTVKEE--KIDIEHVIKKWGI 174
           D+IAT + I + E     I S D+DL+QLV+   + LY DT   +  KI  ++  +K+ I
Sbjct: 118 DLIATLSKIQDVEK---IIFSKDQDLLQLVNDDISILYRDTFSNQYSKITKDNFEEKYLI 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P ++   +A+ GD+ DN+PG+ GIG   A  LL+E+G  +NI  N  +     +++ ++
Sbjct: 175 KPNQIPDYKAINGDNSDNLPGVKGIGKIGAIKLLKEFGTWQNIYNNLDKHSTTVQKK-LV 233

Query: 235 EYAETARLSRKLVMLRTDV-PITIPLEHLIL 264
           E  E ++L   L  L  DV  + + LE+  L
Sbjct: 234 ESQEMSKLCYDLAKLNYDVEELDLNLENYFL 264


>gi|227326524|ref|ZP_03830548.1| exonuclease IX [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 260

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 139/263 (52%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             I    + L +L+QNS+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CITACQHALHQLIQNSQ----PTHAVA 47

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R+++ PDYKA R  +PE L  +LP ++ A  A G+ +    G EADD+ 
Sbjct: 48  VFDDEDRDTSWRHQLLPDYKAGRTPMPENLKQELPQIKAAFAAVGVASWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL++P   + D  ++  +D+  + +++G+ P+++  
Sbjct: 108 ATLAVKLSSAGHQATIVSTDKGYCQLLAPHIQIRDYFQKRWLDLPFIEQEFGVSPQQLTD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG K+AA LLQ+ G+LE +      + +K R++ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGPKSAAQLLQQAGSLEALYQQLDTVPEKWRKK-LEQHKEMAL 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +SR++  LRTD+ +   L+ L L
Sbjct: 227 ISRQIATLRTDLTLNGNLQQLRL 249


>gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 551

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 121/247 (48%), Gaps = 27/247 (10%)

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
           + I+ +  R+H   ++ +T TGRL++  PNLQN P       KIR AF++ P   LI AD
Sbjct: 299 DRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRHAFVAAPGNTLIVAD 357

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796
           Y Q+ELRILAH+     + + F+   D H   A  ++      V  +KV     PQ    
Sbjct: 358 YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 417

Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                         RR AK +NFSI YG +   L+   ++   EA D +K ++     + 
Sbjct: 418 KPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDRKEVS 477

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            + +K K F  +   V T+ GR   +  +       +   ERAAINAP+QGSAAD+   A
Sbjct: 478 AWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGHVERAAINAPVQGSAADVAMCA 537

Query: 904 MISVHKS 910
           M+ + ++
Sbjct: 538 MLEIERN 544


>gi|269138078|ref|YP_003294778.1| exonuclease IX [Edwardsiella tarda EIB202]
 gi|267983738|gb|ACY83567.1| exonuclease IX [Edwardsiella tarda EIB202]
 gi|304558122|gb|ADM40786.1| Exodeoxyribonuclease IX [Edwardsiella tarda FL6-60]
          Length = 253

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 119/210 (56%), Gaps = 7/210 (3%)

Query: 59  SHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
           SH   +FD+   A ++R+++ P YKA R  +P+ L  ++  +R A  A G+      G E
Sbjct: 43  SHAVAVFDHDDRAESWRHQLLPGYKAGRQAMPDDLAQEMESLRAAFTALGVACWHSPGNE 102

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+ AT  +   + G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ P
Sbjct: 103 ADDLAATLAHKVAQSGHRVTIVSTDKGYCQLLSPQIQIRDYFQKRWLDLPFVQREFGVAP 162

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENIL 234
           +++     L G     IPG+ GIG KTAA LL+E+G+LE +     R+ Q  ++ R+ + 
Sbjct: 163 QQLTDFWGLAGIGSSKIPGVSGIGAKTAAALLKEFGSLETLY---QRLAQAPERWRQRLT 219

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           E  E A + R++  L+TD+ +   L+ L L
Sbjct: 220 EQREMAEICRRVATLQTDLALHGNLQQLRL 249


>gi|239978548|ref|ZP_04701072.1| 5'-3' exonuclease [Streptomyces albus J1074]
 gi|291450444|ref|ZP_06589834.1| 5'-3' exonuclease [Streptomyces albus J1074]
 gi|291353393|gb|EFE80295.1| 5'-3' exonuclease [Streptomyces albus J1074]
          Length = 301

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 139/267 (52%), Gaps = 26/267 (9%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R +++ +     +  P
Sbjct: 2   LLDTASLYFRAYFGVPDTVRAPDGTPVNAVRGLLDFIARLVQDHRPDTLVACMDADWR-P 60

Query: 69  AVTFRNEIYPDYKANR--------PKI---PEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           A  +R E+ P YKA+R        P +   P+ L PQ+P++     A GI   E  G+EA
Sbjct: 61  A--WRVELIPTYKAHRVAEETPEGPDVEETPDTLSPQVPVIEAVLDALGIARAEAAGYEA 118

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKIDIEHVIK-K 171
           DD+I T    AE     V I++ D+DL QLV        LY    V   ++  E +++ K
Sbjct: 119 DDVIGTLATAAEG---PVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQLTDEELLREK 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---K 228
           +G+       L  L GD  D +PG+PG+G KTAA LL  YG++  I+  A   + K    
Sbjct: 176 YGVDGAGYAELALLRGDPSDGLPGVPGVGEKTAAKLLAAYGDVAGIVAAAEDPRSKVTPA 235

Query: 229 RRENILEYAETARLSRKLVMLRTDVPI 255
           +R+ +LE      ++ K+V + TD+ +
Sbjct: 236 QRKRLLEARPYLAVAPKVVRVATDIEL 262


>gi|226327076|ref|ZP_03802594.1| hypothetical protein PROPEN_00937 [Proteus penneri ATCC 35198]
 gi|225204294|gb|EEG86648.1| hypothetical protein PROPEN_00937 [Proteus penneri ATCC 35198]
          Length = 249

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 116/209 (55%), Gaps = 3/209 (1%)

Query: 59  SHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
           +H   +FD      ++R+++ PDYKA R  +P+ L  QLP ++      GI +    G E
Sbjct: 42  THAVAVFDEDDREGSWRHQLLPDYKAGRTPMPDDLRQQLPEIKAMLLNLGIQSWHSGGDE 101

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+ AT        GF VTIISTDK   QL+SP+  + D  +   +D+E +  ++G+ P
Sbjct: 102 ADDVAATLATKVASAGFRVTIISTDKGYCQLLSPSIRIRDYFQRRWLDLEFIRSEFGVEP 161

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++     LTG S   + G+PGIG K+A  LLQ Y +LE++  +   +   K +  +  +
Sbjct: 162 SQLTDYWGLTGVSSSKVVGVPGIGPKSATELLQAYPDLESLYQHIDDVP-TKWQNKLTTH 220

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILE 265
            E+A +SRK+  LRTD+ +   L+ L L+
Sbjct: 221 KESAFISRKIATLRTDIQLNGNLQQLRLK 249


>gi|312171312|emb|CBX79571.1| 5'-3' exonuclease [Erwinia amylovora ATCC BAA-2158]
          Length = 251

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 129/224 (57%), Gaps = 7/224 (3%)

Query: 43  NMLWKLLQNSRKESIASHFAVIFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
           N + +LL ++R     +H   +FD    +V++R+++ PDYKA R  +P+ L  ++PL+R 
Sbjct: 30  NAVQQLLLHTR----PTHAVAVFDDDRRSVSWRHQLLPDYKAGRSPMPDALCDEMPLLRS 85

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           A  + G+ +   +G EADD+ AT        G   TI+STDK   QL++PT  + D  ++
Sbjct: 86  AFASIGVTSWHSRGDEADDLAATLASKVAAVGHQATIVSTDKGYCQLLAPTIRIRDYFQK 145

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
             +D+  +   +G+ P ++     L G S   IPG+ GIG K+AA LL+++G++  I  N
Sbjct: 146 RWLDVPFITDSFGVEPTQLTDYWGLAGISSSKIPGVAGIGGKSAAQLLKQFGSMAAIYQN 205

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             ++ +K R++ + E  +TA + +++  L+TD+ +   L+ L L
Sbjct: 206 LDQVPEKWRKK-LAEQQQTATICKRVATLKTDLLLEGNLKELRL 248


>gi|117618346|ref|YP_855694.1| exodeoxyribonuclease IX [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559753|gb|ABK36701.1| exodeoxyribonuclease IX [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 301

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 131/263 (49%), Gaps = 16/263 (6%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAI----AGFCNMLWKLLQNSRKESIAS 59
           HL ++D  + I R  A  A   L+      P  A+    A   N   KLL  S      +
Sbjct: 41  HLLIIDALNLIRRLHAVQAQQALT------PAQALIATRANLINTCRKLLAASE----PT 90

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H   +FD    ++R E+YP YK  R  +P  L   L  ++ A    G+ A+  Q  EADD
Sbjct: 91  HVIAVFDGEVHSWRKEVYPAYKEGRTPMPTELREGLNELQDAFWECGVDALLSQTDEADD 150

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT      + G   TIISTDK   QL+ P   + D   +  +D   V +++G+ P ++
Sbjct: 151 LIATLATGIAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAFVEQQYGVAPAQL 210

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V   ALTG    NI G+PGIG KTA  LLQ+YG+L ++L    +    K    + ++ + 
Sbjct: 211 VDFWALTGIGGSNIKGVPGIGPKTATQLLQQYGDLASLLAACQQEDAAKALLKLRQHQDE 270

Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262
           A L+++LV L+ D+P+   L  +
Sbjct: 271 ALLAQRLVRLQRDIPLGFNLREI 293


>gi|238918762|ref|YP_002932276.1| hypothetical protein NT01EI_0824 [Edwardsiella ictaluri 93-146]
 gi|259710447|sp|C5BHA5|XNI_EDWI9 RecName: Full=Protein Xni
 gi|238868330|gb|ACR68041.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 253

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 118/208 (56%), Gaps = 3/208 (1%)

Query: 59  SHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
           SH   +FD    A ++R+ + P YKA R  +P+ L  ++  +R A  A G+      G E
Sbjct: 43  SHAVAVFDQDDRAESWRHRLLPGYKAGRQAMPDALAQEMESLRAAFTAQGVACWHSPGNE 102

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+ AT  Y   + G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ P
Sbjct: 103 ADDLAATLAYKVAQGGHRVTIVSTDKGYCQLLSPQIQIRDYFQKRWLDLPFVQREFGVAP 162

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++     L G     IPGI GIG KTAA LL+E+G+LE +  + +++ + + R+ + E 
Sbjct: 163 QQLTDFWGLAGIGSSKIPGISGIGAKTAAALLKEFGSLEALYQHLAQVPE-RWRQRLTEQ 221

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLIL 264
            E A + R++  L+TD+ +   L+ L L
Sbjct: 222 REMAEICRRVATLQTDLALHGNLQQLRL 249


>gi|296269792|ref|YP_003652424.1| 5'-3' exonuclease [Thermobispora bispora DSM 43833]
 gi|296092579|gb|ADG88531.1| 5'-3' exonuclease [Thermobispora bispora DSM 43833]
          Length = 314

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 116/226 (51%), Gaps = 19/226 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q E  L L+D  S  +RAF+  P      DG PVNA+ G  +M+  L++      IA+  
Sbjct: 10  QNERVLMLLDTPSLYFRAFHGVPESVTAPDGTPVNAVRGLIDMITTLVRRRSPAGIAACM 69

Query: 62  AVIFDYPAVTFRNEIYPDYKANR-------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
              +  PA  FR  + P YKA+R        ++PE L  QLP++     A GI  I + G
Sbjct: 70  DADWR-PA--FRVAVLPAYKAHRVAADGVTEQVPEALTAQLPVIEQVLDAVGIARIGVPG 126

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV---SPTTCLYDT--VKE-EKIDIEHV 168
           +EADD+I T   +A +   AV I++ D+DL QLV    P   LY    V+  + +D   +
Sbjct: 127 YEADDVIGT---LAARATGAVEIVTGDRDLFQLVDDAKPCRVLYTARGVRALQVVDEAFI 183

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             ++GIP         L GD  D +PG+PGIG +TAA L+  +G L
Sbjct: 184 TARYGIPGRSYADFALLRGDPSDGLPGVPGIGERTAAALISTFGTL 229


>gi|333028231|ref|ZP_08456295.1| putative 5'-3' exonuclease [Streptomyces sp. Tu6071]
 gi|332748083|gb|EGJ78524.1| putative 5'-3' exonuclease [Streptomyces sp. Tu6071]
          Length = 302

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 150/292 (51%), Gaps = 31/292 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R +++ +      D+ 
Sbjct: 2   LLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDALVACMDA--DWR 59

Query: 69  AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
              +R  + P YKA+R            ++P+ L PQ+P++     A GI  + + G+EA
Sbjct: 60  P-EWRVSLIPSYKAHRVAEETEAGPDEEEVPDTLSPQVPVIEAVLDALGIARLGVPGYEA 118

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKIDIEHVIK-K 171
           DD+I T   +A +    V I++ D+DL QLV        LY    V   ++  E +++ K
Sbjct: 119 DDVIGT---LATRAHGPVDIVTGDRDLFQLVDDARGVRVLYPLKGVGSLQVTDEALLREK 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----ASRIKQK 227
           +G+       L  L GD  D +PG+PGIG KTAA LL  YG+L+ I       AS+I   
Sbjct: 176 YGVDGPGYADLATLRGDPSDGLPGVPGIGEKTAAKLLAAYGDLDGIRAAAADPASKITPA 235

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
           +RR  ++E A    ++  +V +  D+P+   L+  + ++   PR    L AL
Sbjct: 236 QRRR-LIESAPYLDVAPAVVRVARDIPVPEDLDERLPDE---PRDGEVLTAL 283


>gi|254506827|ref|ZP_05118966.1| exonuclease IX [Vibrio parahaemolyticus 16]
 gi|219550112|gb|EED27098.1| exonuclease IX [Vibrio parahaemolyticus 16]
          Length = 259

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 130/257 (50%), Gaps = 13/257 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N IA       + L    KES  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---------DPNDIARTITTTTRTLNKIIKESQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P+YK NR  +PE LL  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQERGWRAEILPEYKQNRKPMPEPLLNGLESIQDAWWQLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+SPT  + D  +   +D   + K++G+ P+++    
Sbjct: 115 LAMKVANHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDAPFIEKEFGVTPKQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E     AS     K R+ + E+ ++AR  
Sbjct: 175 GLTGVSSSQVPGVPGIGPKAAKEILTQFDDIEAAY--ASDELPSKYRKKLDEHIDSARRC 232

Query: 244 RKLVMLRTDVPITIPLE 260
           +++  L+TD+ +   L+
Sbjct: 233 KQIAALKTDIELGFNLQ 249


>gi|163749528|ref|ZP_02156776.1| exonuclease IX [Shewanella benthica KT99]
 gi|161330937|gb|EDQ01864.1| exonuclease IX [Shewanella benthica KT99]
          Length = 257

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 131/260 (50%), Gaps = 11/260 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R   A P      +GL  N +A  CN L K  Q        SH A++
Sbjct: 2   NTFLIIDGLNLVRRIHAAQPN-DNDTNGLD-NRVASACNKLLKFHQ-------PSHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   V++R  ++ DYK  R  +P+ L   LP ++L      + +++    EADD+IAT 
Sbjct: 53  WDGKEVSWRKHLFEDYKKGRKPMPKALSEYLPGLKLHLANIHVNSLDADS-EADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                  G    I+STDK   QL  P    +D   +  + I    ++ G+   + +   A
Sbjct: 112 ASKLAASGGEAIIVSTDKGFTQLNHPKIKRWDHFNKVYLTIAEREQQLGVQHSQFIDYLA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPG+PGIG K+A  LL+ + +L NI ++   +  K+ ++ + E  + ARLS 
Sbjct: 172 LAGDSGNKIPGVPGIGPKSAIELLKRFRSLANIYLSIDEVGAKQAKK-LEEGKQMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLIL 264
           KLV LRTD+P+   L    L
Sbjct: 231 KLVQLRTDMPLKANLNQFRL 250


>gi|318075728|ref|ZP_07983060.1| 5'-3' exonuclease [Streptomyces sp. SA3_actF]
          Length = 302

 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 150/292 (51%), Gaps = 31/292 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R +++ +      D+ 
Sbjct: 2   LLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDALVACMDA--DWR 59

Query: 69  AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
              +R  + P YKA+R            ++P+ L PQ+P++     A GI  + + G+EA
Sbjct: 60  P-EWRVSLIPSYKAHRVAEETETGPDEEEVPDTLSPQVPVIEAVLDALGIARLGVPGYEA 118

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKIDIEHVIK-K 171
           DD+I T   +A +    V I++ D+DL QLV        LY    V   ++  E +++ K
Sbjct: 119 DDVIGT---LATRAHGPVDIVTGDRDLFQLVDDARGVRVLYPLKGVGSLQVTDEALLREK 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----ASRIKQK 227
           +G+       L  L GD  D +PG+PGIG KTAA LL  YG+L+ I       AS+I   
Sbjct: 176 YGVDGPGYADLATLRGDPSDGLPGVPGIGEKTAAKLLAAYGDLDGIRAAAADPASKITPA 235

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
           +RR  ++E A    ++  +V +  D+P+   L+  + ++   PR    L AL
Sbjct: 236 QRRR-LVESAPYLDVAPAVVRVARDIPVPEDLDERLPDE---PRDGEVLTAL 283


>gi|157376443|ref|YP_001475043.1| exonuclease IX [Shewanella sediminis HAW-EB3]
 gi|189030098|sp|A8FYJ2|XNI_SHESH RecName: Full=Protein Xni
 gi|157318817|gb|ABV37915.1| 5'-3' exonuclease [Shewanella sediminis HAW-EB3]
          Length = 255

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 133/265 (50%), Gaps = 13/265 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R   A P      +GL +  +   C  L K  Q        +H AV+
Sbjct: 2   NTFLIIDGMNLVRRMHAAQPN-ENDVNGLDIR-VGSACKKLVKYHQ-------PTHVAVV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R  ++ DYK  R  +PE L   LP ++      G+ +I+    EADD+IAT 
Sbjct: 53  WDGDDISWRKHLFEDYKKGRKPMPEALSNTLPALKSYLAEQGVNSIDAAS-EADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                  G    I+STDK   QL  P    +D   +  + IE   +K G+   + +   A
Sbjct: 112 ASKLVANGGKAIIVSTDKGFTQLSDPYIQRWDHFNQHYMTIEEREEKLGVEHSQFIDYLA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ETARLS 243
           L GDS + IPG+PGIG K+A  LL+ + +L NI  +  +I  K+ ++  LE   + ARLS
Sbjct: 172 LAGDSGNKIPGVPGIGPKSAIELLRTFRSLANIYASLDKIGAKQAKK--LEAGKQMARLS 229

Query: 244 RKLVMLRTDVPITIPLEHLILEDCN 268
            KLV L+TD+P+ I L    L + N
Sbjct: 230 YKLVQLQTDIPLNINLSQFRLPNPN 254


>gi|83319696|ref|YP_424044.1| 5-3 exonuclease family protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283582|gb|ABC01514.1| 5-3 exonuclease family protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 304

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 117/219 (53%), Gaps = 11/219 (5%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L+DG   +++ +Y T     +S+  DG+ +NAI  F   + K + + +  S+     V
Sbjct: 9   ILLIDGYHLLHKGYYGTLKRKKVSKNKDGIIINAIYSFVANILKFINSDQYHSVI----V 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD     +R +IYP+YKA R   P  L+PQL + R    A  I   E   +E DDII +
Sbjct: 65  AFDVDDNCWRKQIYPEYKAKRKPTPNDLIPQLQIARDFLIASNITWYEKSNYEGDDIIGS 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKIDI---EHVIKKWGIPPEKM 179
              IA K G+ V I++ DKD+ QLV+  T +   V K+EK  I   + V + +   P ++
Sbjct: 125 ICKIANKLGYEVQILTNDKDIYQLVNQKTSIITNVSKKEKTKIIREKEVYEHFLCKPNQV 184

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             ++A+ GD  DNI GI  I  K A  L+ +Y N+ENIL
Sbjct: 185 ADIKAILGDQSDNIKGIKYIKRKQAEALINKYENVENIL 223


>gi|254364903|ref|ZP_04980949.1| hypothetical 5-3 exonuclease [Mycobacterium tuberculosis str.
           Haarlem]
 gi|308376910|ref|ZP_07440493.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu008]
 gi|134150417|gb|EBA42462.1| hypothetical 5-3 exonuclease [Mycobacterium tuberculosis str.
           Haarlem]
 gi|308349570|gb|EFP38421.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu008]
          Length = 337

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 142/288 (49%), Gaps = 33/288 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 22  SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLD 79

Query: 65  FDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI     
Sbjct: 80  LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 138

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 139 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 196

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 197 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 256

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
              K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 257 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 304


>gi|156630376|sp|A0KHE3|XNI_AERHH RecName: Full=Protein Xni
          Length = 267

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 131/263 (49%), Gaps = 16/263 (6%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAI----AGFCNMLWKLLQNSRKESIAS 59
           HL ++D  + I R  A  A   L+      P  A+    A   N   KLL  S      +
Sbjct: 7   HLLIIDALNLIRRLHAVQAQQALT------PAQALIATRANLINTCRKLLAASE----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H   +FD    ++R E+YP YK  R  +P  L   L  ++ A    G+ A+  Q  EADD
Sbjct: 57  HVIAVFDGEVHSWRKEVYPAYKEGRTPMPTELREGLNELQDAFWECGVDALLSQTDEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT      + G   TIISTDK   QL+ P   + D   +  +D   V +++G+ P ++
Sbjct: 117 LIATLATGIAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAFVEQQYGVAPAQL 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V   ALTG    NI G+PGIG KTA  LLQ+YG+L ++L    +    K    + ++ + 
Sbjct: 177 VDFWALTGIGGSNIKGVPGIGPKTATQLLQQYGDLASLLAACQQEDAAKALLKLRQHQDE 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262
           A L+++LV L+ D+P+   L  +
Sbjct: 237 ALLAQRLVRLQRDIPLGFNLREI 259


>gi|308380268|ref|ZP_07489325.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu011]
 gi|308362076|gb|EFP50927.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu011]
          Length = 337

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 138/279 (49%), Gaps = 31/279 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 22  SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLD 79

Query: 65  FDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI     
Sbjct: 80  LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 138

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 139 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 196

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 197 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 256

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI 257
              K    K  R  +L  +   + + ++V + TD P+T+
Sbjct: 257 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTL 295


>gi|41407923|ref|NP_960759.1| hypothetical protein MAP1825 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396277|gb|AAS04142.1| hypothetical protein MAP_1825 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 318

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 33/278 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+++  P      DG PVNA+ GF + L  ++   R     S   V  D
Sbjct: 5   LVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFLDSLAVVITQQR----PSRLVVCLD 60

Query: 67  YP-AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 FR ++ P YKA+R             ++P+ L PQ+ ++    +A+GIP    +
Sbjct: 61  LDWRPQFRVDLVPSYKAHRVPEAEPAGEPDVEEVPDDLTPQIDMIAELLEAYGIPTAGAE 120

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIE 166
           GFEADD++ T    A +    V ++S D+DL+Q+VS    P   LY      K       
Sbjct: 121 GFEADDVLGTLA--ARERDDPVVVVSGDRDLLQVVSDDPVPVRVLYLGRGLSKATLFGPV 178

Query: 167 HVIKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V + +G+P ++       L  L GD  D +PG+PG+G KTAA LL ++G+LE +L  A 
Sbjct: 179 EVAEHYGVPVDRAGPAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLERVLAAAH 238

Query: 223 RIKQKKR---RENILEYAETARLSRKLVMLRTDVPITI 257
             K K     R  +L   +    +  +V + TD P+ +
Sbjct: 239 DPKSKMAKGLRAKLLGALDYIEAAGAVVRVATDAPVKL 276


>gi|191168545|ref|ZP_03030330.1| exodeoxyribonuclease-9 [Escherichia coli B7A]
 gi|190901392|gb|EDV61156.1| exodeoxyribonuclease-9 [Escherichia coli B7A]
          Length = 251

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 135/263 (51%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              LTG S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLTGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|332669054|ref|YP_004452062.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Cellulomonas fimi ATCC 484]
 gi|332338092|gb|AEE44675.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas fimi ATCC 484]
          Length = 318

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 144/283 (50%), Gaps = 34/283 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L L+D +S  +RAF+  P   +  DG PVNA+ G  +M+ +L+ + R   + + 
Sbjct: 1   MTAHGRLLLLDTASLYFRAFFGVPDSVKAPDGTPVNAVRGLLDMIARLVVDRRPTRLVAC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPA 109
           +    D     FR E  P YKA+R            ++P++L PQ+P++    +AFGI  
Sbjct: 61  WD---DDWRPAFRVEAIPSYKAHRVAVPVPGGSDVEEVPDLLTPQVPVIVEVLEAFGIAR 117

Query: 110 IEIQGFEADDIIATYTYIAEK-----EGFAVTIISTDKDLMQLV---SPTTCLYDT--VK 159
           +   GFEADD+I T     EK     E  AV +++ D+DL QLV   +    LY    +K
Sbjct: 118 VGAPGFEADDVIGTLV-AREKARPAGERAAVDVVTGDRDLFQLVDDEAHVRVLYTVRGIK 176

Query: 160 E-EKIDIEHVIKKWGIPPEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
           + E +D   + +++ +        +  L GD  D +PG+ GIG KTAA L+  YG+L+ I
Sbjct: 177 DLEVVDQARLAERYAVASGPAYADMAVLRGDPSDGLPGVAGIGEKTAATLVHRYGSLDGI 236

Query: 218 LI-----NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           L      +A     ++RR  ++E A+   ++ ++V +  D P+
Sbjct: 237 LAARDTGDAGLTATQRRR--LVEAADYLAVAPRVVTVAHDAPV 277


>gi|331703109|ref|YP_004399796.1| DNA polymerase I, 5' 3' exonuclease [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328801664|emb|CBW53817.1| DNA polymerase I, 5' 3' exonuclease [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 303

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 11/219 (5%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L+DG   +++ +Y T    ++S+  DG+ +NAI  F   + K +Q+ R  S+     V
Sbjct: 9   ILLIDGYHLLHKGYYGTLKRTIVSKNKDGIVINAIYSFVANILKFVQSDRYHSVI----V 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+    +R E+Y +YKA R   P  L+PQL + R    +  I   E   +E DD+I +
Sbjct: 65  AFDFDENCWRKELYSEYKAKRKPTPIDLVPQLQIARDFLTSANISWYEKYNYEGDDVIGS 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKIDI---EHVIKKWGIPPEKM 179
              IA K G+ V I++ DKD+ QLV+  T +   + K+EK  I   + V + +   P ++
Sbjct: 125 ICRIANKLGYDVCILTNDKDIYQLVNNKTSIITNISKKEKTKIIKPQQVYEHFLCQPNQV 184

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             ++A+ GD  DNI G+  I  K A  L+ +Y N+ENIL
Sbjct: 185 ADIKAILGDQSDNIKGVKYIKRKQAENLINKYENVENIL 223


>gi|254819633|ref|ZP_05224634.1| hypothetical protein MintA_06909 [Mycobacterium intracellulare ATCC
           13950]
          Length = 318

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 33/277 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+++  P      DG PVNA+ GF + +  ++   R     S   V  D
Sbjct: 5   LVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFIDSVAFVITQQR----PSRLVVCLD 60

Query: 67  YP-AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 FR ++ P YKA+R             ++P+ L PQ+ ++     AFGIP    +
Sbjct: 61  LDWRPQFRVDLVPSYKAHRVAEPEPPGEPDIEEVPDDLTPQIDMIAELLDAFGIPTAGAE 120

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIE 166
           GFEADD++ T    A +    V ++S D+DLMQ+VS    P   LY      K       
Sbjct: 121 GFEADDVLGTLA--ARERDDPVVVVSGDRDLMQVVSDDPVPVRVLYLGRGLSKATLFGPA 178

Query: 167 HVIKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V + +G+P E+       L  L GD  D +PG+PG+G KTAA LL ++G+LE IL  A 
Sbjct: 179 EVAEHYGVPVERAGPAYAELALLRGDPSDGLPGVPGVGEKTAASLLAQHGSLEQILAAAH 238

Query: 223 RIKQKKR---RENILEYAETARLSRKLVMLRTDVPIT 256
             K K     R  +L   +    +  +V + TD  +T
Sbjct: 239 DPKSKMPKGLRAKLLGALDYIEAAGDVVRVATDAHVT 275


>gi|260856908|ref|YP_003230799.1| exonuclease IX [Escherichia coli O26:H11 str. 11368]
 gi|257755557|dbj|BAI27059.1| exonuclease IX [Escherichia coli O26:H11 str. 11368]
          Length = 281

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQP----THAVA 77

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++GI P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGIQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|292487211|ref|YP_003530083.1| 5'-3' exonuclease [Erwinia amylovora CFBP1430]
 gi|292900414|ref|YP_003539783.1| exodeoxyribonuclease IX [Erwinia amylovora ATCC 49946]
 gi|291200262|emb|CBJ47390.1| exodeoxyribonuclease IX [Erwinia amylovora ATCC 49946]
 gi|291552630|emb|CBA19675.1| 5'-3' exonuclease [Erwinia amylovora CFBP1430]
          Length = 251

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 129/224 (57%), Gaps = 7/224 (3%)

Query: 43  NMLWKLLQNSRKESIASHFAVIFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
           N + +LL ++R     +H   +FD    +V++R+++ PDYKA R  +P+ L  ++PL+R 
Sbjct: 30  NAVQQLLLHTR----PTHAVAVFDDDRRSVSWRHQLLPDYKAGRSPMPDALCDEMPLLRS 85

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           A  + G+ +   +G EADD+ +T        G   TI+STDK   QL++PT  + D  ++
Sbjct: 86  AFASIGVTSWHSRGDEADDLASTLASKVAAVGHQATIVSTDKGYCQLLAPTIRIRDYFQK 145

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
             +D+  +   +G+ P ++     L G S   IPG+ GIG K+AA LL+++G++  I  N
Sbjct: 146 RWLDVPFITDSFGVEPTQLTDYWGLAGISSSKIPGVAGIGGKSAAQLLKQFGSMAAIYQN 205

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             ++ +K R++ + E  +TA + +++  L+TD+ +   L+ L L
Sbjct: 206 LDQVPEKWRKK-LAEQQQTATICKRVATLKTDLLLEGNLKELRL 248


>gi|215488115|ref|YP_002330546.1| exonuclease IX [Escherichia coli O127:H6 str. E2348/69]
 gi|215266187|emb|CAS10613.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 281

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     
Sbjct: 70  SQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSAS 129

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 130 GNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFG 189

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+++     L G S   +PG+ GIG K+A  LL E+ +LE I  N + + +K R++ +
Sbjct: 190 VQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFKSLEGIYENLNAVAEKWRKK-L 248

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 249 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 279


>gi|256384342|gb|ACU78912.1| DNA polymerase I, 5'-3' exonuclease [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|256385174|gb|ACU79743.1| DNA polymerase I, 5'-3' exonuclease [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|296455437|gb|ADH21672.1| dna polymerase I, 5'-3' exonuclease [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 303

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 11/219 (5%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L+DG   +++ +Y T    ++S+  DG+ +NAI  F   + K +Q+ R  S+     V
Sbjct: 9   ILLIDGYHLLHKGYYGTLKRTIVSKNKDGIVINAIYSFVANILKFVQSDRYHSVI----V 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+    +R E+Y +YKA R   P  L+PQL + R    +  I   E   +E DD+I +
Sbjct: 65  AFDFDENCWRKELYSEYKAKRKPTPIDLVPQLQIARDFLTSANISWYEKYNYEGDDVIGS 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKIDI---EHVIKKWGIPPEKM 179
              IA K G+ V I++ DKD+ QLV+  T +   + K+EK  I   + V + +   P ++
Sbjct: 125 ICRIANKLGYDVCILTNDKDIYQLVNNKTSIITNISKKEKTKIIKPQQVYEHFLCQPNQV 184

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             ++A+ GD  DNI G+  I  K A  L+ +Y N+ENIL
Sbjct: 185 ADIKAILGDQSDNIKGVKYIKRKQAENLINKYENVENIL 223


>gi|261252287|ref|ZP_05944860.1| probable exodeoxyribonuclease IX [Vibrio orientalis CIP 102891]
 gi|260935678|gb|EEX91667.1| probable exodeoxyribonuclease IX [Vibrio orientalis CIP 102891]
          Length = 258

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 132/267 (49%), Gaps = 16/267 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N IA       + L     ES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---------DPNDIARTITTTSRTLNRILSESQPTHIIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI+P+YK NR  +PE L+  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQERGWRAEIWPEYKQNRKPMPEPLMNGLEAIQDAWWKLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   + K++G+ P+++    
Sbjct: 115 LAMKVASHNEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIDKEFGVKPKQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PG+G K A  +L ++ ++E     AS     K R+ + E+ E+AR  
Sbjct: 175 GLTGISSSQVPGVPGVGPKAAKEILTQFTDIEQAF--ASEELPAKYRKKLDEHIESARKC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGP 270
           + +  L+TD+ +   L+ L     NGP
Sbjct: 233 KLIAALKTDIELGFNLQDLRF---NGP 256


>gi|256788770|ref|ZP_05527201.1| 5'-3' exonuclease [Streptomyces lividans TK24]
          Length = 301

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 135/269 (50%), Gaps = 30/269 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+++ R E    H     D  
Sbjct: 2   LLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLDFIDRLVKDHRPE----HLVACMDAD 57

Query: 69  -AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + + G+E
Sbjct: 58  WRPHWRVELIPSYKAHRVAEERPAGPDAEEVPDTLSPQVPVIEAVLDALGIARVGVAGYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLYDTVKE----EKIDIEHVI 169
           ADD+I TYT  A   G  V I++ D+DL QLV        LY  VK       +D   + 
Sbjct: 118 ADDVIGTYT--ARATG-PVDIVTGDRDLYQLVDDARGVRVLY-PVKGVGTLNLVDEAALR 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-- 227
           +K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  I       K +  
Sbjct: 174 EKYGVDGAGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIQAAVDDPKARLT 233

Query: 228 -KRRENILEYAETARLSRKLVMLRTDVPI 255
             +R+ + E      ++ K+V +  DVP+
Sbjct: 234 PTQRKRLTEAGPYLAVAPKVVRVAADVPL 262


>gi|21220118|ref|NP_625897.1| 5'-3' exonuclease [Streptomyces coelicolor A3(2)]
 gi|17367064|sp|Q9RJ79|EX53_STRCO RecName: Full=5'-3' exonuclease
 gi|6119664|emb|CAB59475.1| putative 5'-3' exonuclease [Streptomyces coelicolor A3(2)]
          Length = 301

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 135/269 (50%), Gaps = 30/269 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+++ R E    H     D  
Sbjct: 2   LLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLDFIDRLVKDHRPE----HLVACMDAD 57

Query: 69  -AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + + G+E
Sbjct: 58  WRPHWRVELIPSYKAHRVAEERPAGPDAEEVPDTLSPQVPVIEAVLDALGIARVGVAGYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLYDTVKE----EKIDIEHVI 169
           ADD+I TYT  A   G  V I++ D+DL QLV        LY  VK       +D   + 
Sbjct: 118 ADDVIGTYT--ARATG-PVDIVTGDRDLYQLVDDARGVRVLY-PVKGVGTLNLVDEAALR 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-- 227
           +K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  I       K +  
Sbjct: 174 EKYGVDGAGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIQAAVDDPKARLT 233

Query: 228 -KRRENILEYAETARLSRKLVMLRTDVPI 255
             +R+ + E      ++ K+V +  DVP+
Sbjct: 234 PTQRKRLTEAGPYLAVAPKVVRVAADVPL 262


>gi|15803320|ref|NP_289353.1| exonuclease IX [Escherichia coli O157:H7 EDL933]
 gi|82778177|ref|YP_404526.1| exonuclease IX [Shigella dysenteriae Sd197]
 gi|291284127|ref|YP_003500945.1| hypothetical protein G2583_3451 [Escherichia coli O55:H7 str.
           CB9615]
 gi|12517277|gb|AAG57912.1|AE005508_3 5'-3' exonuclease [Escherichia coli O157:H7 str. EDL933]
 gi|13363130|dbj|BAB37081.1| 5'-3' exonuclease [Escherichia coli O157:H7 str. Sakai]
 gi|81242325|gb|ABB63035.1| 5'-3' exonuclease [Shigella dysenteriae Sd197]
 gi|209761308|gb|ACI78966.1| 5'-3' exonuclease [Escherichia coli]
 gi|209761310|gb|ACI78967.1| 5'-3' exonuclease [Escherichia coli]
 gi|209761312|gb|ACI78968.1| 5'-3' exonuclease [Escherichia coli]
 gi|209761314|gb|ACI78969.1| 5'-3' exonuclease [Escherichia coli]
 gi|209761316|gb|ACI78970.1| 5'-3' exonuclease [Escherichia coli]
 gi|290764000|gb|ADD57961.1| Uncharacterized exonuclease xni [Escherichia coli O55:H7 str.
           CB9615]
          Length = 281

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQP----THAVA 77

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|238760465|ref|ZP_04621602.1| Uncharacterized exonuclease xni [Yersinia aldovae ATCC 35236]
 gi|238701307|gb|EEP93887.1| Uncharacterized exonuclease xni [Yersinia aldovae ATCC 35236]
          Length = 251

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 136/264 (51%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGF--CNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                ++A+ G    N     LQ     S  +H   
Sbjct: 4   HLLIVDALNLIRR----------------IHAVQGSPCVNACQHALQQLISHSQPTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++P +R A  A G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPHIREAFNALGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLVAKISGAGHQATIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAALLLQ+  +LE +  +   I +K R++ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTAALLLQQVSSLEELYQSLESIPEKWRKK-LQQHQEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           + +++  L+TD+P++  L+ L L+
Sbjct: 227 ICKQIATLKTDLPLSGNLQQLRLK 250


>gi|121637975|ref|YP_978199.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224990469|ref|YP_002645156.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121493623|emb|CAL72098.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224773582|dbj|BAH26388.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 355

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 142/288 (49%), Gaps = 33/288 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 40  SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLD 97

Query: 65  FDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI     
Sbjct: 98  LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 156

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 157 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 214

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 215 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 274

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
              K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 275 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 322


>gi|308379118|ref|ZP_07485107.2| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu010]
 gi|308358102|gb|EFP46953.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu010]
          Length = 368

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 138/279 (49%), Gaps = 31/279 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 53  SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLD 110

Query: 65  FDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI     
Sbjct: 111 LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 169

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 170 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 227

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 228 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 287

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI 257
              K    K  R  +L  +   + + ++V + TD P+T+
Sbjct: 288 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTL 326


>gi|209972979|ref|YP_002300426.1| gp32.85 [Bacillus phage SPO1]
 gi|209871299|gb|ACI91055.1| gp32.85 [Bacillus phage SPO1]
          Length = 314

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 128/249 (51%), Gaps = 16/249 (6%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG++  +R F+       K DG P   I G  N +  LL+   K        V++D 
Sbjct: 3   MLIDGNNLAHRVFHTPQSSLTKKDGTPSGVILGVINSIKGLLE---KFPDTEAVTVMWDG 59

Query: 68  PAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
               +R E+YP+YKA R          +  + L  Q+  +        I ++++ G+EAD
Sbjct: 60  GRSEWRKELYPEYKAQRDYGEDDEEKAEAYQGLWDQIEELHKNLDKLAIDSVKLTGYEAD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA  T   E  G  V I+++DKD++QLVS  T +Y   ++  I + + ++  G+    
Sbjct: 120 DLIALMTKQLESLGKNVLIVTSDKDMLQLVSEKTSVYSPYRDIVIGLSNFVENTGVELNA 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK----KRRENIL 234
            +  +AL GD+ DNI G+PGIG KTA  L+++YG+++NIL +   ++++    KR   I 
Sbjct: 180 YMGYRALVGDTSDNIIGVPGIGEKTAQNLMKKYGHIDNILQSTGSVRKELMKSKRNARIF 239

Query: 235 EYAETARLS 243
           E     RL 
Sbjct: 240 EPENLKRLG 248


>gi|170727796|ref|YP_001761822.1| exonuclease IX [Shewanella woodyi ATCC 51908]
 gi|226733940|sp|B1KQX1|XNI_SHEWM RecName: Full=Protein Xni
 gi|169813143|gb|ACA87727.1| 5'-3' exonuclease [Shewanella woodyi ATCC 51908]
          Length = 252

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 138/262 (52%), Gaps = 15/262 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA-IAGFCNMLWKLLQNSRKESIASHFAV 63
           N   ++DG + + R   A P    ++D   ++A +A  C  L K  Q        SH A+
Sbjct: 2   NTFLIIDGLNLVRRIHAAQP---NENDVNGLDARVASACKKLLKYHQ-------PSHVAI 51

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           ++D  A ++R  +Y DYK  R  +PE L   LP ++       + +I+ +  EADD+IAT
Sbjct: 52  VWDGDATSWRKTLYEDYKKGRKPMPEALAKSLPALKTHLSELNVNSIDAEA-EADDVIAT 110

Query: 124 Y-TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
             T +   +G A+ I+STDK   QL       +D   +  I IE   +K G+   + +  
Sbjct: 111 LATKLVNNQGKAI-IVSTDKGFTQLTHTNIERWDHFNQAYITIEQREEKLGVERTQFIDY 169

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GDS + IPG+PGIG K+A+ LL+ + +L N+  +  ++  K+ ++ + E  + ARL
Sbjct: 170 LALAGDSGNKIPGVPGIGPKSASELLKIFRSLSNLYGSLEQVGAKQAKK-LEEGKQMARL 228

Query: 243 SRKLVMLRTDVPITIPLEHLIL 264
           S KLV L+T++P+   L    L
Sbjct: 229 SYKLVQLQTEIPLNANLSQFRL 250


>gi|308050518|ref|YP_003914084.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Ferrimonas balearica DSM 9799]
 gi|307632708|gb|ADN77010.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Ferrimonas balearica DSM 9799]
          Length = 255

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 131/257 (50%), Gaps = 13/257 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDG + + R   A P  +   + L    +          +  + ++   SH  +++D
Sbjct: 5   LLLVDGLNLVRRIHAAVP--NEDAEDLKRRCLGA--------MDKALRQHKPSHAILVWD 54

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                ++R ++YP+YKA+R  +PE L   LPL+     + G+ ++  Q  EADD+IAT  
Sbjct: 55  GGHDNSWRRQLYPEYKAHRKPMPEDLARALPLLDTGFASLGVRSVRQQDLEADDLIATIA 114

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
                 G  V I+STDK   QL+ P    +D      ID E + +K G+P  +++   AL
Sbjct: 115 SKVSAAGGEVVILSTDKGFGQLLGPGIAQWDHFDGHWIDAELLQQKVGVPQSRLLDYWAL 174

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS + IPGIPGIG KTA  L+ ++ +L+ +   A+     K  E +  + + ARLS +
Sbjct: 175 AGDSGNGIPGIPGIGKKTALELVSQFDSLKALF--AADAVPGKLGERLQAHQDEARLSYR 232

Query: 246 LVMLRTDVPITIPLEHL 262
           LV LR D+ + + L   
Sbjct: 233 LVQLRRDLELKLNLSQF 249


>gi|329939069|ref|ZP_08288443.1| 5'-3' exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301954|gb|EGG45847.1| 5'-3' exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 301

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 146/293 (49%), Gaps = 33/293 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+++ R + + +     +  P
Sbjct: 2   LLDTASLYFRAYFGVPESLKAPDGTPVNAVRGLLDFIDRLVKDHRPDDLVACMDADWR-P 60

Query: 69  AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           A  +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + +  +EA
Sbjct: 61  A--WRVELIPSYKAHRVAEARPAGPDTEEVPDTLSPQVPIIEAVLDALGIARVGVAEYEA 118

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLYDT--VKEEKIDIEHVIK-K 171
           DD+I T+T  A   G  V I++ D+DL QLV        LY    V    +  E V++ K
Sbjct: 119 DDVIGTFT--ARATG-PVDIVTGDRDLYQLVDDARGVRVLYPVKGVGTLLLTDEAVLREK 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------ 225
           +G+       L  L GD  D +PG+PG+G KTAA LL E+G+L  +L      K      
Sbjct: 176 YGVDGRGYADLATLRGDPSDGLPGVPGVGEKTAAKLLAEFGDLPGVLAAVEDPKARLTPT 235

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           Q++R    L Y E A    K+V +  DVP+  P+   +      P ++  L +
Sbjct: 236 QRRRLTEALPYLEVA---PKVVKVADDVPLP-PVPTALPHTARDPEMVEALAS 284


>gi|251790755|ref|YP_003005476.1| 5'-3' exonuclease [Dickeya zeae Ech1591]
 gi|247539376|gb|ACT07997.1| 5'-3' exonuclease [Dickeya zeae Ech1591]
          Length = 253

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 139/263 (52%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P L            A   + L +L+Q+SR     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCL------------AACQHALNQLIQHSR----PTHAVA 47

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R+++ P+YKA R  +PE L  +LP +R A  A G+ +    G EADD+ 
Sbjct: 48  VFDDEQRDQSWRHQLLPEYKAGRAPMPENLSRELPQIREAFLASGVDSWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT       +G   TI+STDK   QL++PT  + D  ++  +D+  + +++G+ PE++  
Sbjct: 108 ATLASKVAAQGHQATIVSTDKGYCQLLAPTIRIRDYFQKRWLDVPFIQQEFGVQPEQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAA LLQ+ G+LE +     +I +K RR+ +    + A 
Sbjct: 168 YWGLAGISSSKIPGVSGIGPKTAAQLLQQAGSLEALYQQLEQIPEKWRRK-LESQQDMAY 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
             R++  L+TD+ +   L+ L L
Sbjct: 227 RCRQVATLKTDLVLNGNLQQLRL 249


>gi|215431016|ref|ZP_03428935.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis EAS054]
 gi|219558061|ref|ZP_03537137.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis T17]
 gi|260201202|ref|ZP_05768693.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis T46]
          Length = 318

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 33/286 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +  D
Sbjct: 5   LVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLDLD 62

Query: 67  YPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      G
Sbjct: 63  WRP-QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPG 121

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEH 167
           FEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K        
Sbjct: 122 FEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAE 179

Query: 168 VIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A  
Sbjct: 180 VAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADD 239

Query: 224 IKQ---KKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
            K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 240 RKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 285


>gi|74313370|ref|YP_311789.1| exonuclease IX [Shigella sonnei Ss046]
 gi|82545097|ref|YP_409044.1| exonuclease IX [Shigella boydii Sb227]
 gi|89109584|ref|AP_003364.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli str. K-12
           substr. W3110]
 gi|157158560|ref|YP_001464121.1| exonuclease IX [Escherichia coli E24377A]
 gi|157162252|ref|YP_001459570.1| exonuclease IX [Escherichia coli HS]
 gi|170082369|ref|YP_001731689.1| Ssb-binding protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187730847|ref|YP_001881461.1| exonuclease IX [Shigella boydii CDC 3083-94]
 gi|209920249|ref|YP_002294333.1| exonuclease IX [Escherichia coli SE11]
 gi|218555349|ref|YP_002388262.1| exonuclease IX [Escherichia coli IAI1]
 gi|218696397|ref|YP_002404064.1| exonuclease IX [Escherichia coli 55989]
 gi|238901936|ref|YP_002927732.1| Ssb-binding protein, misidentified as ExoIX [Escherichia coli
           BW2952]
 gi|253772350|ref|YP_003035181.1| exonuclease IX [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037852|ref|ZP_04871910.1| exonuclease IX [Escherichia sp. 1_1_43]
 gi|254162724|ref|YP_003045832.1| exonuclease IX [Escherichia coli B str. REL606]
 gi|260845444|ref|YP_003223222.1| exonuclease IX [Escherichia coli O103:H2 str. 12009]
 gi|293412146|ref|ZP_06654869.1| xni [Escherichia coli B354]
 gi|293449124|ref|ZP_06663545.1| xni [Escherichia coli B088]
 gi|331643485|ref|ZP_08344616.1| 5-3 exonuclease [Escherichia coli H736]
 gi|331678779|ref|ZP_08379453.1| 5-3 exonuclease [Escherichia coli H591]
 gi|332280532|ref|ZP_08392945.1| ssb-binding protein [Shigella sp. D9]
 gi|882693|gb|AAB40448.1| TTG start; ORF_o281 [Escherichia coli str. K-12 substr. MG1655]
 gi|73856847|gb|AAZ89554.1| 5'-3' exonuclease [Shigella sonnei Ss046]
 gi|81246508|gb|ABB67216.1| 5'->3' exonuclease [Shigella boydii Sb227]
 gi|85675617|dbj|BAE76870.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli str. K12
           substr. W3110]
 gi|157067932|gb|ABV07187.1| exodeoxyribonuclease-9 [Escherichia coli HS]
 gi|157080590|gb|ABV20298.1| exodeoxyribonuclease-9 [Escherichia coli E24377A]
 gi|169890204|gb|ACB03911.1| Ssb-binding protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187427839|gb|ACD07113.1| exodeoxyribonuclease-9 [Shigella boydii CDC 3083-94]
 gi|209913508|dbj|BAG78582.1| exonuclease IX [Escherichia coli SE11]
 gi|218353129|emb|CAU98971.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli 55989]
 gi|218362117|emb|CAQ99726.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli IAI1]
 gi|226839476|gb|EEH71497.1| exonuclease IX [Escherichia sp. 1_1_43]
 gi|238863574|gb|ACR65572.1| Ssb-binding protein, misidentified as ExoIX [Escherichia coli
           BW2952]
 gi|242378345|emb|CAQ33122.1| YgdG [Escherichia coli BL21(DE3)]
 gi|253323394|gb|ACT27996.1| 5'-3' exonuclease [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974625|gb|ACT40296.1| exonuclease IX [Escherichia coli B str. REL606]
 gi|253978790|gb|ACT44460.1| exonuclease IX [Escherichia coli BL21(DE3)]
 gi|257760591|dbj|BAI32088.1| exonuclease IX [Escherichia coli O103:H2 str. 12009]
 gi|291322214|gb|EFE61643.1| xni [Escherichia coli B088]
 gi|291468917|gb|EFF11408.1| xni [Escherichia coli B354]
 gi|309703156|emb|CBJ02490.1| 5'-3' exonuclease [Escherichia coli ETEC H10407]
 gi|315137405|dbj|BAJ44564.1| exonuclease IX [Escherichia coli DH1]
 gi|331036956|gb|EGI09180.1| 5-3 exonuclease [Escherichia coli H736]
 gi|331073609|gb|EGI44930.1| 5-3 exonuclease [Escherichia coli H591]
 gi|332102884|gb|EGJ06230.1| ssb-binding protein [Shigella sp. D9]
          Length = 281

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 77

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|167967041|ref|ZP_02549318.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis H37Ra]
 gi|17375479|sp|Q10699|EX53_MYCTU RecName: Full=5'-3' exonuclease
          Length = 318

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 31/277 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +  D
Sbjct: 5   LVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLDLD 62

Query: 67  YPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      G
Sbjct: 63  WRP-QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPG 121

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEH 167
           FEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K        
Sbjct: 122 FEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAE 179

Query: 168 VIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A  
Sbjct: 180 VAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADD 239

Query: 224 IKQ---KKRRENILEYAETARLSRKLVMLRTDVPITI 257
            K    K  R  +L  +   + + ++V + TD P+T+
Sbjct: 240 RKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTL 276


>gi|218706294|ref|YP_002413813.1| exonuclease IX [Escherichia coli UMN026]
 gi|218433391|emb|CAR14293.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli UMN026]
          Length = 281

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRVHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 77

Query: 64  IFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRTAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|289447711|ref|ZP_06437455.1| 5'-3' exonuclease [Mycobacterium tuberculosis CPHL_A]
 gi|289420669|gb|EFD17870.1| 5'-3' exonuclease [Mycobacterium tuberculosis CPHL_A]
 gi|323719389|gb|EGB28528.1| 5'-3' exonuclease [Mycobacterium tuberculosis CDC1551A]
          Length = 374

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 33/288 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 59  SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLD 116

Query: 65  FDYPAVTFRNEIYPDYKANR---------P---KIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R         P   ++P+ L PQ+ ++     AFGI     
Sbjct: 117 LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 175

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 176 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 233

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 234 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 293

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
              K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 294 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 341


>gi|289443596|ref|ZP_06433340.1| 5'-3' exonuclease [Mycobacterium tuberculosis T46]
 gi|289570203|ref|ZP_06450430.1| 5-3 exonuclease [Mycobacterium tuberculosis T17]
 gi|289754200|ref|ZP_06513578.1| 5'-3' exonuclease [Mycobacterium tuberculosis EAS054]
 gi|289416515|gb|EFD13755.1| 5'-3' exonuclease [Mycobacterium tuberculosis T46]
 gi|289543957|gb|EFD47605.1| 5-3 exonuclease [Mycobacterium tuberculosis T17]
 gi|289694787|gb|EFD62216.1| 5'-3' exonuclease [Mycobacterium tuberculosis EAS054]
          Length = 374

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 33/288 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 59  SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLD 116

Query: 65  FDYPAVTFRNEIYPDYKANR---------P---KIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R         P   ++P+ L PQ+ ++     AFGI     
Sbjct: 117 LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 175

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 176 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 233

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 234 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 293

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
              K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 294 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 341


>gi|15841581|ref|NP_336618.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis CDC1551]
 gi|215403474|ref|ZP_03415655.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis 02_1987]
 gi|215411796|ref|ZP_03420588.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis 94_M4241A]
 gi|215446313|ref|ZP_03433065.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis T85]
 gi|218753812|ref|ZP_03532608.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis GM 1503]
 gi|254551123|ref|ZP_05141570.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187079|ref|ZP_05764553.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis CPHL_A]
 gi|294997034|ref|ZP_06802725.1| 5'-3' exonuclease [Mycobacterium tuberculosis 210]
 gi|297634671|ref|ZP_06952451.1| 5'-3' exonuclease [Mycobacterium tuberculosis KZN 4207]
 gi|297731659|ref|ZP_06960777.1| 5'-3' exonuclease [Mycobacterium tuberculosis KZN R506]
 gi|298525589|ref|ZP_07012998.1| 5'-3'-exonuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|306789229|ref|ZP_07427551.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu004]
 gi|313658994|ref|ZP_07815874.1| 5'-3' exonuclease [Mycobacterium tuberculosis KZN V2475]
 gi|13881829|gb|AAK46432.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis CDC1551]
 gi|298495383|gb|EFI30677.1| 5'-3'-exonuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|308334287|gb|EFP23138.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu004]
          Length = 318

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 33/286 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +  D
Sbjct: 5   LVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLDLD 62

Query: 67  YPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      G
Sbjct: 63  WRP-QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPG 121

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEH 167
           FEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K        
Sbjct: 122 FEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAE 179

Query: 168 VIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A  
Sbjct: 180 VAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADD 239

Query: 224 IKQ---KKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
            K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 240 RKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 285


>gi|26249203|ref|NP_755243.1| exonuclease IX [Escherichia coli CFT073]
 gi|91212166|ref|YP_542152.1| exonuclease IX [Escherichia coli UTI89]
 gi|218559786|ref|YP_002392699.1| exonuclease IX [Escherichia coli S88]
 gi|237706571|ref|ZP_04537052.1| exonuclease IX [Escherichia sp. 3_2_53FAA]
 gi|26109610|gb|AAN81813.1|AE016765_215 Exodeoxyribonuclease IX [Escherichia coli CFT073]
 gi|91073740|gb|ABE08621.1| exodeoxyribonuclease IX [Escherichia coli UTI89]
 gi|218366555|emb|CAR04308.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli S88]
 gi|226899611|gb|EEH85870.1| exonuclease IX [Escherichia sp. 3_2_53FAA]
 gi|294491910|gb|ADE90666.1| exodeoxyribonuclease-9 [Escherichia coli IHE3034]
          Length = 281

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQP----THAVA 77

Query: 64  IFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|24114083|ref|NP_708593.1| exonuclease IX [Shigella flexneri 2a str. 301]
 gi|30064144|ref|NP_838315.1| exonuclease IX [Shigella flexneri 2a str. 2457T]
 gi|110806739|ref|YP_690259.1| exonuclease IX [Shigella flexneri 5 str. 8401]
 gi|24053213|gb|AAN44300.1| 5-3 exonuclease [Shigella flexneri 2a str. 301]
 gi|30042400|gb|AAP18125.1| 5-3 exonuclease [Shigella flexneri 2a str. 2457T]
 gi|110616287|gb|ABF04954.1| 5'-3' exonuclease [Shigella flexneri 5 str. 8401]
 gi|281602158|gb|ADA75142.1| putative exonuclease xni [Shigella flexneri 2002017]
          Length = 281

 Score =  124 bits (311), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 135/263 (51%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 77

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA+RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKADRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|289806032|ref|ZP_06536661.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 142

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 92/141 (65%), Gaps = 1/141 (0%)

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T+
Sbjct: 3   VLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTS 62

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL
Sbjct: 63  EEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRL 121

Query: 714 ASLEPNLQNIPIKTDLGQKIR 734
           +S +PNLQNIP++ + G++IR
Sbjct: 122 SSTDPNLQNIPVRNEEGRRIR 142


>gi|218690921|ref|YP_002399133.1| exonuclease IX [Escherichia coli ED1a]
 gi|218428485|emb|CAR09411.2| exonuclease IX (5'-3' exonuclease) [Escherichia coli ED1a]
 gi|222034489|emb|CAP77231.1| exodeoxyribonuclease-9 [Escherichia coli LF82]
 gi|312947326|gb|ADR28153.1| exonuclease IX [Escherichia coli O83:H1 str. NRG 857C]
          Length = 281

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQP----THAVA 77

Query: 64  IFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDMHIDGNLQQLRL 279


>gi|302546696|ref|ZP_07299038.1| probable 5'-3' exonuclease [Streptomyces hygroscopicus ATCC 53653]
 gi|302464314|gb|EFL27407.1| probable 5'-3' exonuclease [Streptomyces himastatinicus ATCC 53653]
          Length = 308

 Score =  124 bits (311), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 94/297 (31%), Positives = 151/297 (50%), Gaps = 39/297 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+Q+ R + + +   + FD
Sbjct: 5   LMLLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLDFIARLVQDHRPDDLVA--CMDFD 62

Query: 67  Y-PAVTFRNEIYPDYKANR-------------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           + PA  +R E+ P YKA+R              ++P+ L PQ+P++     A GI  +  
Sbjct: 63  WRPA--WRVELIPTYKAHRVAEEAPEAAAVDQEEVPDTLSPQVPVIDAVLDAIGIARVGS 120

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKE----EKIDI 165
            G+EADD+I T   +A +    V I++ D+DL QLVS       LY  VK     + +D 
Sbjct: 121 AGYEADDVIGT---LAGRATGPVDIVTGDRDLFQLVSDERRARVLY-PVKGVGTLQLVDE 176

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----A 221
             + +K+G+       L  L GD  D +PG+PG+G KTAA LL  +G+L  I+       
Sbjct: 177 ALLREKYGVDGGGYADLALLRGDPSDGLPGVPGVGEKTAAKLLAAHGDLAGIMAAVDDPG 236

Query: 222 SRI--KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           S++   Q+KR +    Y   A    K+V + +DVP+  P +  +      PR +  L
Sbjct: 237 SKLTPTQRKRLDEARPYLAVA---PKVVRVASDVPLP-PFDAAVPRTPRDPRAVDAL 289


>gi|290961715|ref|YP_003492897.1| 5'-3' exonuclease [Streptomyces scabiei 87.22]
 gi|260651241|emb|CBG74363.1| putative 5'-3' exonuclease [Streptomyces scabiei 87.22]
          Length = 316

 Score =  124 bits (311), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 141/279 (50%), Gaps = 46/279 (16%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   +  DG PVNA+ G    + +L+++ R   + +      D
Sbjct: 15  LMLLDTASLYFRAYFGVPESVKAPDGTPVNAVRGLLEFIDRLVKDHRPTDLVA--CTDAD 72

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +    +R ++ P YKA+R            ++P+ L PQ+P++     A GI  + + G+
Sbjct: 73  WRP-QWRVDLIPSYKAHRVAEEHEAGPDEEQVPDTLSPQVPVIEAVLDALGIARVGVAGY 131

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI------------ 163
           EADD+I T+T +A+     V I++ D+DL QLV       D  +E ++            
Sbjct: 132 EADDVIGTFTALAKD---PVDIVTGDRDLYQLV-------DDAREVRVLYPLKGVGTLQL 181

Query: 164 -DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN-- 220
            D   + +K+G+       L  L GD  D +PG+PGIG KTAA LL ++G+L  I+    
Sbjct: 182 TDEAWLREKYGVVGRGYADLALLRGDPSDGLPGVPGIGEKTAAKLLDQFGDLAGIMAAVD 241

Query: 221 --ASRI--KQKKRRENILEYAETARLSRKLVMLRTDVPI 255
             A+++   Q+KR +    Y   A    K+V++  DVP+
Sbjct: 242 DPAAKLTPSQRKRLDEARPYVAVA---PKVVLVAADVPL 277


>gi|188494962|ref|ZP_03002232.1| exodeoxyribonuclease IX [Escherichia coli 53638]
 gi|188490161|gb|EDU65264.1| exodeoxyribonuclease IX [Escherichia coli 53638]
          Length = 281

 Score =  124 bits (311), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 77

Query: 64  IFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|124262774|ref|YP_001023244.1| DNA polymerase I [Methylibium petroleiphilum PM1]
 gi|124262020|gb|ABM97009.1| DNA polymerase I [Methylibium petroleiphilum PM1]
          Length = 265

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 131/268 (48%), Gaps = 7/268 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L L+DG+S + R + A P      D  P   + G        ++ +  E + +H
Sbjct: 1   MSTRPKLLLLDGTSVVRRVYEAVP-----GDDGPAR-VDGAITASMHSIKRALGEHLPTH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F   FD    T+R+++ P YK+ R  + E L   LP +    ++ G   +   G EADD+
Sbjct: 55  FLAAFDDGGPTWRHQLLPTYKSTRKPMYEGLRAALPRLYRDMESLGFSWVSPPGVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T  + A   GF V I+S D D+  L+S    +Y+    E  D   +  + GI P ++ 
Sbjct: 115 IGTIAHRAAARGFEVVIVSNDVDMCALLSANVRVYNHFAREWRDETWLASQIGITPAQVS 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L G+   ++PG+ G+G KTAA LL ++G+L+ +L  A+ +  K   E +   AE  
Sbjct: 175 AYIGLVGEEKKSVPGVAGVGPKTAAKLLAQHGDLDGVLAAAAEMPGKI-GERLRAGAEAC 233

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCN 268
           RLS+ L  L+ DV ++I    L L + N
Sbjct: 234 RLSQALGTLKLDVDLSIRPSQLALPNRN 261


>gi|148823304|ref|YP_001288058.1| 5'-3' exonuclease [Mycobacterium tuberculosis F11]
 gi|289745366|ref|ZP_06504744.1| 5'-3' exonuclease [Mycobacterium tuberculosis 02_1987]
 gi|289758207|ref|ZP_06517585.1| 5'-3' exonuclease [Mycobacterium tuberculosis T85]
 gi|289762252|ref|ZP_06521630.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|308373325|ref|ZP_07431861.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu005]
 gi|308375774|ref|ZP_07445066.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu007]
 gi|308377913|ref|ZP_07480882.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu009]
 gi|148721831|gb|ABR06456.1| hypothetical 5'-3' exonuclease [Mycobacterium tuberculosis F11]
 gi|289685894|gb|EFD53382.1| 5'-3' exonuclease [Mycobacterium tuberculosis 02_1987]
 gi|289709758|gb|EFD73774.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713771|gb|EFD77783.1| 5'-3' exonuclease [Mycobacterium tuberculosis T85]
 gi|308338089|gb|EFP26940.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu005]
 gi|308345268|gb|EFP34119.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu007]
 gi|308354199|gb|EFP43050.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu009]
 gi|326903704|gb|EGE50637.1| 5-3 exonuclease [Mycobacterium tuberculosis W-148]
          Length = 393

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 33/288 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 78  SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLD 135

Query: 65  FDYPAVTFRNEIYPDYKANR---------P---KIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R         P   ++P+ L PQ+ ++     AFGI     
Sbjct: 136 LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 194

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 195 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 252

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 253 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 312

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
              K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 313 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 360


>gi|238792765|ref|ZP_04636396.1| Uncharacterized exonuclease xni [Yersinia intermedia ATCC 29909]
 gi|238727873|gb|EEQ19396.1| Uncharacterized exonuclease xni [Yersinia intermedia ATCC 29909]
          Length = 250

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 140/263 (53%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P          +NA     + L +L+Q+S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPC---------INACQ---HALQQLIQHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++P +R A  + G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQRLPDYKAGRSPMPDNLQQEMPQIREAFTSLGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLATKIGGAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAALLLQ   NLE +  +   + +K R++ + ++ + A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTAALLLQHASNLEALYQDLESVPEKWRKK-LQQHQDMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           + +++  LRTD+P+   L+ L L
Sbjct: 227 ICKQIATLRTDLPLNGNLQQLRL 249


>gi|301026235|ref|ZP_07189699.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 196-1]
 gi|299879784|gb|EFI87995.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 196-1]
          Length = 278

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 31  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 74

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 75  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 134

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 135 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 194

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 195 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 253

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 254 LCRDIARLQTDLHIDGNLQQLRL 276


>gi|260869476|ref|YP_003235878.1| exonuclease IX [Escherichia coli O111:H- str. 11128]
 gi|257765832|dbj|BAI37327.1| exonuclease IX [Escherichia coli O111:H- str. 11128]
          Length = 281

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     
Sbjct: 70  SQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTS 129

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 130 GNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFG 189

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+++     L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +
Sbjct: 190 VQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-L 248

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 249 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 279


>gi|326382291|ref|ZP_08203983.1| 5'-3' exonuclease [Gordonia neofelifaecis NRRL B-59395]
 gi|326199021|gb|EGD56203.1| 5'-3' exonuclease [Gordonia neofelifaecis NRRL B-59395]
          Length = 313

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 89/271 (32%), Positives = 136/271 (50%), Gaps = 33/271 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG+S  +R+FYA P      DG PVNA+ GF + +  L+   R     +   V  D
Sbjct: 7   VMLLDGASLWFRSFYALPEKMTAPDGRPVNAVRGFVDTIAALVTTHR----PTRLVVCLD 62

Query: 67  Y---PAVTFRNEIYPDYKANR--------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               PA  FR E+ P YKA+R         ++P+ L PQ+ ++    +  GI     +G 
Sbjct: 63  LDWRPA--FRTELIPSYKAHRVAAEGDGAEEVPDTLTPQVDMILDVLRCAGIATSGARGC 120

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHV 168
           EADD+I T  +    +   V ++S D+DL+Q+V+    P   LY      K E +  E V
Sbjct: 121 EADDVIGTLAFHEAVDD--VLVVSGDRDLLQVVADDPVPVRVLYVGRGLAKAELMGPEEV 178

Query: 169 IKKWGIPPEKMVCLQA----LTGDSIDNIPGIPGIGYKTAALLLQEYGN---LENILINA 221
             K+G+P ++     A    L GD  D +PG+PGIG KTAA LL ++ +   LE+   + 
Sbjct: 179 SAKYGVPVDRAGVAYAEMSILRGDPSDGLPGVPGIGEKTAAKLLTQFASLDALESAAGDP 238

Query: 222 SRIKQKKRRENILEYAETARLSRKLVMLRTD 252
           +     + R +IL   E    +R +V +RTD
Sbjct: 239 TAPVPTRARNSILNSVEYLAAARTVVAVRTD 269


>gi|323154845|gb|EFZ41038.1| exonuclease xni [Escherichia coli EPECa14]
          Length = 251

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++GI P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGIQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|239932297|ref|ZP_04689250.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672]
          Length = 314

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 121/230 (52%), Gaps = 25/230 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+++ R      H     D
Sbjct: 13  LMLLDTASLYFRAYFGVPESVRAPDGTPVNAVRGLLDFIDRLVKDHR----PGHLVACMD 68

Query: 67  YP-AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
                 +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + ++ 
Sbjct: 69  ADWRPQWRVELIPSYKAHRVAREQAAGPDEEEVPDTLSPQVPVIEAVLDALGIARVGVER 128

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKIDIEHVI 169
           +EADD+I T+T  A  EG  V I++ D+DL QLV        LY    V   ++  E V+
Sbjct: 129 YEADDVIGTFT--ARAEG-PVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQVTDEAVL 185

Query: 170 K-KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           + K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  IL
Sbjct: 186 REKYGVDGRGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIL 235


>gi|238784867|ref|ZP_04628867.1| Uncharacterized exonuclease xni [Yersinia bercovieri ATCC 43970]
 gi|238714184|gb|EEQ06196.1| Uncharacterized exonuclease xni [Yersinia bercovieri ATCC 43970]
          Length = 252

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 83/264 (31%), Positives = 138/264 (52%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             I    + L +L+Q+S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CIKACQHALQQLIQHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++PL+R A  + G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIREAFNSLGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLATKISGTGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTA LLLQ+   LE +      + +K R++  L + + A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTATLLLQQANTLEALYQGLESVPEKWRKKLQL-HQDMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           + +K+  L+TD+P++  L+ L L+
Sbjct: 227 ICKKIATLKTDLPLSGNLQQLRLQ 250


>gi|15609227|ref|NP_216606.1| 5'-3' exonuclease [Mycobacterium tuberculosis H37Rv]
 gi|148661905|ref|YP_001283428.1| putative 5'-3' exonuclease [Mycobacterium tuberculosis H37Ra]
 gi|1370257|emb|CAA98202.1| Probable 5'-3' exonuclease [Mycobacterium tuberculosis H37Rv]
 gi|148506057|gb|ABQ73866.1| putative 5'-3' exonuclease [Mycobacterium tuberculosis H37Ra]
          Length = 393

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 139/279 (49%), Gaps = 31/279 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 78  SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLD 135

Query: 65  FDYPAVTFRNEIYPDYKANR---------P---KIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R         P   ++P+ L PQ+ ++     AFGI     
Sbjct: 136 LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 194

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 195 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 252

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 253 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 312

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI 257
              K    K  R  +L  +   + + ++V + TD P+T+
Sbjct: 313 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTL 351


>gi|253798851|ref|YP_003031852.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 1435]
 gi|289554126|ref|ZP_06443336.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 605]
 gi|253320354|gb|ACT24957.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 1435]
 gi|289438758|gb|EFD21251.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 605]
 gi|328458610|gb|AEB04033.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 4207]
          Length = 393

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 33/288 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 78  SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLD 135

Query: 65  FDYPAVTFRNEIYPDYKANR---------P---KIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R         P   ++P+ L PQ+ ++     AFGI     
Sbjct: 136 LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 194

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 195 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 252

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 253 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 312

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
              K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 313 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 360


>gi|307312773|ref|ZP_07592403.1| 5'-3' exonuclease, SAM-fold domain [Escherichia coli W]
 gi|306907208|gb|EFN37714.1| 5'-3' exonuclease, SAM-fold domain [Escherichia coli W]
 gi|315062079|gb|ADT76406.1| ssb-binding protein, misidentified as ExoIX [Escherichia coli W]
 gi|323377338|gb|ADX49606.1| 5'-3' exonuclease, SAM-fold domain protein [Escherichia coli KO11]
          Length = 281

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 77

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|269849501|sp|Q0T161|XNI_SHIF8 RecName: Full=Protein Xni
 gi|269849502|sp|Q83JW7|XNI_SHIFL RecName: Full=Protein Xni
 gi|313647860|gb|EFS12306.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
 gi|332753652|gb|EGJ84031.1| exonuclease xni [Shigella flexneri K-671]
 gi|332754382|gb|EGJ84748.1| exonuclease xni [Shigella flexneri 2747-71]
 gi|332765751|gb|EGJ95964.1| exonuclease xni [Shigella flexneri 2930-71]
 gi|332999942|gb|EGK19525.1| exonuclease xni [Shigella flexneri K-218]
 gi|333015332|gb|EGK34673.1| exonuclease xni [Shigella flexneri K-304]
          Length = 251

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 135/263 (51%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA+RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKADRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|159483045|ref|XP_001699573.1| hypothetical protein CHLREDRAFT_178318 [Chlamydomonas reinhardtii]
 gi|158272678|gb|EDO98475.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 113/200 (56%), Gaps = 4/200 (2%)

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-I 725
           ++  ++E  +L K+  +Y      H+++RT RV+   +   T TGRL+    NL  +P  
Sbjct: 324 VVHLVMEHARLDKLIQSYTGLFLQHVDRRTGRVYPTLNQVGTATGRLSMSGANLMALPHD 383

Query: 726 KTDLGQKIR---RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           K + G+ +R   RA ++ P   L++ADYSQ+ELR++AHI +   L   F    D+H   A
Sbjct: 384 KEEFGEHLRNFRRALVARPGWLLLAADYSQVELRVIAHITQDPTLASAFRERRDVHAQTA 443

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           A +F V +  V+P  R+  K +NF ++YG+   +LA  + +P +EA+D+I  +   F  +
Sbjct: 444 ARVFRVPLGAVTPAQRQAGKQVNFGLVYGMGAAKLARDIGLPDNEASDFIHTFRDVFATL 503

Query: 843 HEYIEKTKNFVRQNGYVETI 862
           ++ +++TK     +GY  ++
Sbjct: 504 YDQMDRTKAQAFVSGYATSL 523


>gi|297516923|ref|ZP_06935309.1| exonuclease IX [Escherichia coli OP50]
          Length = 251

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 CWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|269849479|sp|B7UHL4|XNI_ECO27 RecName: Full=Protein Xni
          Length = 251

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 135/263 (51%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N + + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFKSLEGIYENLNAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|270585837|ref|ZP_06221408.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270318509|gb|EFA29597.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 141

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 90/142 (63%), Gaps = 1/142 (0%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME TG+ ID D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P  
Sbjct: 1   MERTGVLIDSDALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVL 60

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  G   T  + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT 
Sbjct: 61  QKTPKGAPSTNEEVLEEL-AYSHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTS 119

Query: 703 YSLASTMTGRLASLEPNLQNIP 724
           Y  A T TGRL+S +PNLQNIP
Sbjct: 120 YHQAVTATGRLSSSDPNLQNIP 141


>gi|262364150|gb|ACY60707.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 159

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/155 (43%), Positives = 95/155 (61%), Gaps = 5/155 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLLLVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
               AEK G +V I + DKD+ QLV+P   L +T+
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTM 155


>gi|269115188|ref|YP_003302951.1| DNA polymerase I [Mycoplasma hominis]
 gi|268322813|emb|CAX37548.1| DNA polymerase I [Mycoplasma hominis ATCC 23114]
          Length = 297

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 143/279 (51%), Gaps = 23/279 (8%)

Query: 1   MQKEN-HLFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+K+N  L ++DG+   YR++YAT   + +     +G   NAI  F   L+ LL+    +
Sbjct: 1   MKKDNEQLLIIDGTFLAYRSYYATSYNATQILTTSEGFETNAIVAFFKTLFLLLKKLNPK 60

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
            I     + FD    TFR+E++P YK  R K PE    QL L++       I      GF
Sbjct: 61  YIY----IAFDSHVKTFRHELFPSYKDGRKKAPESFYLQLDLIQEILTNINIQNQYYNGF 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVI 169
           EADDIIA    +  K      I S D+DL QL+   T +   +K++K      ++ ++  
Sbjct: 117 EADDIIAK---VKNKFNLNTIIFSGDQDLNQLIDEQTAI---IKKDKTGSFFFLNSKNFS 170

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           + +   P +++  +AL GD+ DN  G+ GIG K+A  LL +Y  +ENI  N  +IK    
Sbjct: 171 EYYDFLPNQVIDYKALVGDNSDNFKGVVGIGPKSAKTLLDDYKTIENIYNNIEKIKPSIA 230

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIP-LEHLILEDC 267
           ++ ++EY E   L + L  LR D  + +P LE+L + + 
Sbjct: 231 KK-LIEYKENTFLDKYLATLRIDFDLQLPELENLAISNI 268


>gi|320182413|gb|EFW57310.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 251

 Score =  123 bits (309), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDCFQKRWLDAPCIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|313664974|ref|YP_004046845.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma leachii PG50]
 gi|312949786|gb|ADR24382.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma leachii PG50]
          Length = 304

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 11/219 (5%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L+DG   +++ +Y T     +S+  DG+ +NAI  F   + K + +++  S+     V
Sbjct: 9   ILLIDGYHLLHKGYYGTLKRKKVSKNKDGIIINAIYSFVANILKFINSNQYHSVI----V 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD     +R +IYP+YKA R   P  L+PQL + R    A  I   E   +E DDII +
Sbjct: 65  AFDVDDNCWRKQIYPEYKAKRKPTPNDLIPQLQIARDFLIASNITWYEKSNYEGDDIIGS 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKIDI---EHVIKKWGIPPEKM 179
              IA K G+ V I++ DKD+ QLV+  T +   V K+EK  I   + V + +   P ++
Sbjct: 125 ICKIANKLGYEVQILTNDKDIYQLVNQKTSIITNVSKKEKTKIIREKEVYEHFLCKPNQV 184

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             ++A+ GD  DNI GI  I  K A  L+ +Y N+E+IL
Sbjct: 185 ADIKAILGDQSDNIKGIKYIKRKQAEALINKYENVESIL 223


>gi|312964931|ref|ZP_07779171.1| putative exonuclease [Escherichia coli 2362-75]
 gi|312290487|gb|EFR18367.1| putative exonuclease [Escherichia coli 2362-75]
          Length = 214

 Score =  123 bits (309), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     
Sbjct: 3   SQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSAS 62

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 63  GNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFG 122

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+++     L G S   +PG+ GIG K+A  LL E+ +LE I  N + + +K R++ +
Sbjct: 123 VQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFKSLEGIYENLNAVAEKWRKK-L 181

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 182 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 212


>gi|332753515|gb|EGJ83895.1| exonuclease xni [Shigella flexneri 4343-70]
          Length = 247

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD    +  +R++  PDYKA+RP +PE L  ++P +R A +  G+P     
Sbjct: 36  SQPTHAVAVFDDENRSSGWRHQRLPDYKADRPPMPEELHDEMPALRAAFEQRGVPCWSAS 95

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 96  GNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFG 155

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+++     L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +
Sbjct: 156 VQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-L 214

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 215 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 245


>gi|284922736|emb|CBG35824.1| 5'-3' exonuclease [Escherichia coli 042]
          Length = 281

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD       +R++  PDYKA RP +PE L  ++P +R A +  G+P     
Sbjct: 70  SQPTHAVAVFDDENRNSGWRHQRLPDYKAGRPPMPEELHDEMPALRTAFEQRGVPCWSAS 129

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 130 GNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFG 189

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+++     L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +
Sbjct: 190 VQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-L 248

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 249 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 279


>gi|254232253|ref|ZP_04925580.1| hypothetical protein TBCG_02040 [Mycobacterium tuberculosis C]
 gi|308369618|ref|ZP_07418455.2| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu002]
 gi|308370913|ref|ZP_07423185.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu003]
 gi|124601312|gb|EAY60322.1| hypothetical protein TBCG_02040 [Mycobacterium tuberculosis C]
 gi|308327019|gb|EFP15870.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu002]
 gi|308330454|gb|EFP19305.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu003]
          Length = 313

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 33/284 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +  D+ 
Sbjct: 2   LLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLDLDWR 59

Query: 69  AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      GFE
Sbjct: 60  P-QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFE 118

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHVI 169
           ADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K        V 
Sbjct: 119 ADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVA 176

Query: 170 KKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   K
Sbjct: 177 ERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRK 236

Query: 226 Q---KKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
               K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 237 TTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 280


>gi|289574771|ref|ZP_06454998.1| 5'-3' exonuclease [Mycobacterium tuberculosis K85]
 gi|289539202|gb|EFD43780.1| 5'-3' exonuclease [Mycobacterium tuberculosis K85]
          Length = 374

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 143/288 (49%), Gaps = 33/288 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L ++DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 59  SPLVILDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLD 116

Query: 65  FDYPAVTFRNEIYPDYKANR---------P---KIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R         P   ++P+ L PQ+ ++     AFGI     
Sbjct: 117 LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 175

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 176 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 233

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 234 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 293

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
              K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 294 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 341


>gi|259909477|ref|YP_002649833.1| Exodeoxyribonuclease IX [Erwinia pyrifoliae Ep1/96]
 gi|224965099|emb|CAX56631.1| Exodeoxyribonuclease IX [Erwinia pyrifoliae Ep1/96]
 gi|283479550|emb|CAY75466.1| 5'-3' exonuclease [Erwinia pyrifoliae DSM 12163]
          Length = 249

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 128/224 (57%), Gaps = 7/224 (3%)

Query: 43  NMLWKLLQNSRKESIASHFAVIFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
           N + +LL ++R     +H   +FD    + ++R+++ PDYKA R  +P+ L  ++PL+R 
Sbjct: 30  NAMQQLLLHTR----PTHAVAVFDDDRRSSSWRHQLLPDYKAGRSPMPDALRDEMPLLRC 85

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           A  + G+ +   +G EADD+ AT        G   TI+STDK   QL++PT  + D  ++
Sbjct: 86  AFASIGVKSWHSKGDEADDLAATLASKVAAVGHQATIVSTDKGYCQLLAPTIQIRDYFQK 145

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
             +D+  +   +G+ P ++     L G S   IPG+ GIG K+AA LL+++G++  I  N
Sbjct: 146 RWLDMPFITDSFGVEPTQLTDYWGLAGISSSKIPGVAGIGGKSAAQLLRQFGSMAAIYQN 205

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             ++ +K R++ + E+ + A + +++  L+TD+ +   L+ L L
Sbjct: 206 LEQVPEKWRKK-LAEHQQMATICKQVATLKTDLLLEGNLKELRL 248


>gi|293406290|ref|ZP_06650216.1| exonuclease xni [Escherichia coli FVEC1412]
 gi|298382026|ref|ZP_06991623.1| exonuclease xni [Escherichia coli FVEC1302]
 gi|269849489|sp|B7N732|XNI_ECOLU RecName: Full=Protein Xni
 gi|291426296|gb|EFE99328.1| exonuclease xni [Escherichia coli FVEC1412]
 gi|298277166|gb|EFI18682.1| exonuclease xni [Escherichia coli FVEC1302]
          Length = 251

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRVHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRTAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|295097359|emb|CBK86449.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 268

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 3/219 (1%)

Query: 49  LQNSRKESIASHFAVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           L+   + S  +H   +FD  A    +R++  PDYKA R  +P+ L  ++P +R A +  G
Sbjct: 50  LEQLIRHSEPTHAVAVFDDEARNTGWRHQRLPDYKAGRAPMPDDLHAEMPAIRAAFEQRG 109

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +P     G EADD+ AT        G   TI+STDK   QL+SPT  + D  ++  +D  
Sbjct: 110 VPCWGAHGNEADDLAATLAVKVASAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAP 169

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            +  ++G+ PE++     L G S   +PG+ GIG K+AA LL E+ +LE I      + +
Sbjct: 170 FIASEFGVSPEQLPDYWGLAGISSSKVPGVAGIGPKSAAQLLTEFQSLEGIYARLDEVPE 229

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           K R++ +  + E A + R++  L+TD+ +   L+ L LE
Sbjct: 230 KWRKK-LEAHKEMAFICREVATLQTDLQLDGNLQQLRLE 267


>gi|38704119|ref|NP_311685.2| exonuclease IX [Escherichia coli O157:H7 str. Sakai]
 gi|168751015|ref|ZP_02776037.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4113]
 gi|168758183|ref|ZP_02783190.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4401]
 gi|168764518|ref|ZP_02789525.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4501]
 gi|168766771|ref|ZP_02791778.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4486]
 gi|168777575|ref|ZP_02802582.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4196]
 gi|168778792|ref|ZP_02803799.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4076]
 gi|168788062|ref|ZP_02813069.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC869]
 gi|168801662|ref|ZP_02826669.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC508]
 gi|170018956|ref|YP_001723910.1| exonuclease IX [Escherichia coli ATCC 8739]
 gi|193065120|ref|ZP_03046194.1| exodeoxyribonuclease-9 [Escherichia coli E22]
 gi|193071101|ref|ZP_03052026.1| exodeoxyribonuclease-9 [Escherichia coli E110019]
 gi|194426223|ref|ZP_03058778.1| exodeoxyribonuclease-9 [Escherichia coli B171]
 gi|194439644|ref|ZP_03071715.1| exodeoxyribonuclease-9 [Escherichia coli 101-1]
 gi|195936402|ref|ZP_03081784.1| exonuclease IX [Escherichia coli O157:H7 str. EC4024]
 gi|208809296|ref|ZP_03251633.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4206]
 gi|208812635|ref|ZP_03253964.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4045]
 gi|208820419|ref|ZP_03260739.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4042]
 gi|209398738|ref|YP_002272264.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4115]
 gi|217327577|ref|ZP_03443660.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. TW14588]
 gi|226524743|ref|NP_417278.4| Ssb-binding protein, misidentified as ExoIX [Escherichia coli str.
           K-12 substr. MG1655]
 gi|254794739|ref|YP_003079576.1| exonuclease IX [Escherichia coli O157:H7 str. TW14359]
 gi|256019414|ref|ZP_05433279.1| exonuclease IX [Shigella sp. D9]
 gi|256024698|ref|ZP_05438563.1| exonuclease IX [Escherichia sp. 4_1_40B]
 gi|261226099|ref|ZP_05940380.1| exonuclease IX [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256646|ref|ZP_05949179.1| exonuclease IX [Escherichia coli O157:H7 str. FRIK966]
 gi|293416045|ref|ZP_06658685.1| exonuclease xni [Escherichia coli B185]
 gi|300815782|ref|ZP_07096006.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 107-1]
 gi|300820588|ref|ZP_07100739.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 119-7]
 gi|300906673|ref|ZP_07124362.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 84-1]
 gi|300920345|ref|ZP_07136783.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 115-1]
 gi|300931260|ref|ZP_07146600.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 187-1]
 gi|300950532|ref|ZP_07164440.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 116-1]
 gi|300958118|ref|ZP_07170276.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 175-1]
 gi|301304569|ref|ZP_07210679.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 124-1]
 gi|301645233|ref|ZP_07245186.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 146-1]
 gi|307139485|ref|ZP_07498841.1| exonuclease IX [Escherichia coli H736]
 gi|309786082|ref|ZP_07680711.1| putative exonuclease [Shigella dysenteriae 1617]
 gi|309795268|ref|ZP_07689687.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 145-7]
 gi|312972984|ref|ZP_07787157.1| putative exonuclease [Escherichia coli 1827-70]
 gi|331654283|ref|ZP_08355283.1| 5-3 exonuclease [Escherichia coli M718]
 gi|331669533|ref|ZP_08370379.1| 5-3 exonuclease [Escherichia coli TA271]
 gi|269849478|sp|A7ZQP2|XNI_ECO24 RecName: Full=Protein Xni
 gi|269849481|sp|B7LEX6|XNI_ECO55 RecName: Full=Protein Xni
 gi|269849482|sp|Q8X6R9|XNI_ECO57 RecName: Full=Protein Xni
 gi|269849485|sp|B7LXL4|XNI_ECO8A RecName: Full=Protein Xni
 gi|269849486|sp|C4ZZV3|XNI_ECOBW RecName: Full=Protein Xni
 gi|269849487|sp|B1XDK7|XNI_ECODH RecName: Full=Protein Xni
 gi|269849488|sp|A8A3T3|XNI_ECOHS RecName: Full=Protein Xni
 gi|269849490|sp|B6I6J6|XNI_ECOSE RecName: Full=Protein Xni
 gi|269849498|sp|B2TZD5|XNI_SHIB3 RecName: Full=Protein Xni
 gi|269849499|sp|Q31XJ2|XNI_SHIBS RecName: Full=Protein Xni
 gi|269849500|sp|Q32CC0|XNI_SHIDS RecName: Full=Protein Xni
 gi|269849503|sp|Q3YY58|XNI_SHISS RecName: Full=Protein Xni
 gi|269849724|sp|P38506|XNI_ECOLI RecName: Full=Protein Xni; AltName: Full=Exonuclease IX;
           Short=ExoIX
 gi|169753884|gb|ACA76583.1| 5'-3' exonuclease [Escherichia coli ATCC 8739]
 gi|187767211|gb|EDU31055.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4196]
 gi|188014862|gb|EDU52984.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4113]
 gi|189003443|gb|EDU72429.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4076]
 gi|189354954|gb|EDU73373.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4401]
 gi|189363834|gb|EDU82253.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4486]
 gi|189365504|gb|EDU83920.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4501]
 gi|189372147|gb|EDU90563.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC869]
 gi|189376214|gb|EDU94630.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC508]
 gi|192927251|gb|EDV81871.1| exodeoxyribonuclease-9 [Escherichia coli E22]
 gi|192955562|gb|EDV86040.1| exodeoxyribonuclease-9 [Escherichia coli E110019]
 gi|194415531|gb|EDX31798.1| exodeoxyribonuclease-9 [Escherichia coli B171]
 gi|194421391|gb|EDX37407.1| exodeoxyribonuclease-9 [Escherichia coli 101-1]
 gi|208729097|gb|EDZ78698.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4206]
 gi|208733912|gb|EDZ82599.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4045]
 gi|208740542|gb|EDZ88224.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4042]
 gi|209160138|gb|ACI37571.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4115]
 gi|217319944|gb|EEC28369.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. TW14588]
 gi|226510970|gb|AAC75840.2| Ssb-binding protein, misidentified as ExoIX [Escherichia coli str.
           K-12 substr. MG1655]
 gi|254594139|gb|ACT73500.1| Ssb-binding protein [Escherichia coli O157:H7 str. TW14359]
 gi|260448151|gb|ACX38573.1| 5'-3' exonuclease [Escherichia coli DH1]
 gi|291432234|gb|EFF05216.1| exonuclease xni [Escherichia coli B185]
 gi|300315184|gb|EFJ64968.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 175-1]
 gi|300401574|gb|EFJ85112.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 84-1]
 gi|300412670|gb|EFJ95980.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 115-1]
 gi|300450142|gb|EFK13762.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 116-1]
 gi|300460914|gb|EFK24407.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 187-1]
 gi|300526852|gb|EFK47921.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 119-7]
 gi|300531711|gb|EFK52773.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 107-1]
 gi|300840173|gb|EFK67933.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 124-1]
 gi|301076503|gb|EFK91309.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 146-1]
 gi|308121239|gb|EFO58501.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 145-7]
 gi|308926193|gb|EFP71671.1| putative exonuclease [Shigella dysenteriae 1617]
 gi|310332926|gb|EFQ00140.1| putative exonuclease [Escherichia coli 1827-70]
 gi|315256660|gb|EFU36628.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 85-1]
 gi|315615186|gb|EFU95823.1| exonuclease family protein [Escherichia coli 3431]
 gi|320189134|gb|EFW63793.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320202445|gb|EFW77015.1| DNA polymerase I [Escherichia coli EC4100B]
 gi|320640448|gb|EFX09987.1| flap endonuclease-like protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320645694|gb|EFX14679.1| flap endonuclease-like protein [Escherichia coli O157:H- str.
           493-89]
 gi|320650994|gb|EFX19434.1| flap endonuclease-like protein [Escherichia coli O157:H- str. H
           2687]
 gi|320656490|gb|EFX24386.1| flap endonuclease-like protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662386|gb|EFX29783.1| flap endonuclease-like protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667084|gb|EFX34047.1| flap endonuclease-like protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323159885|gb|EFZ45855.1| putative exonuclease [Escherichia coli E128010]
 gi|323167862|gb|EFZ53553.1| putative exonuclease [Shigella sonnei 53G]
 gi|323172899|gb|EFZ58530.1| putative exonuclease [Escherichia coli LT-68]
 gi|323183340|gb|EFZ68737.1| exonuclease xni [Escherichia coli 1357]
 gi|323935840|gb|EGB32143.1| 5'-3' exonuclease [Escherichia coli E1520]
 gi|323946479|gb|EGB42505.1| 5'-3' exonuclease [Escherichia coli H120]
 gi|323960684|gb|EGB56308.1| 5'-3' exonuclease [Escherichia coli H489]
 gi|323971600|gb|EGB66831.1| 5'-3' exonuclease [Escherichia coli TA007]
 gi|324016346|gb|EGB85565.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 117-3]
 gi|324119840|gb|EGC13719.1| 5'-3' exonuclease [Escherichia coli E1167]
 gi|326339127|gb|EGD62942.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342991|gb|EGD66759.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
 gi|331047665|gb|EGI19742.1| 5-3 exonuclease [Escherichia coli M718]
 gi|331063201|gb|EGI35114.1| 5-3 exonuclease [Escherichia coli TA271]
 gi|332092152|gb|EGI97230.1| exonuclease xni [Shigella boydii 3594-74]
 gi|332344691|gb|AEE58025.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 251

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|325115196|emb|CBZ50752.1| hypothetical protein NCLIV_012190 [Neospora caninum Liverpool]
          Length = 1235

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 157/342 (45%), Gaps = 72/342 (21%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIP--------------------------------- 724
            RV T ++   T+TGRL+S  PNLQNIP                                 
Sbjct: 891  RVFTRWNQTRTVTGRLSSSYPNLQNIPKVMVLPSLSSLTSSSSSCSSSSPSSDVSPSSPS 950

Query: 725  ---IKTDLGQKI--RRAF---ISPPTKKLISADYSQIELRILAHIAKITPLYQVF----- 771
               ++  L + +  R AF   +   +  +++ADY+QIE+R+LAH     PL  +      
Sbjct: 951  SSRLRYTLPKTVNCREAFRDDVQDGSAVVVAADYAQIEMRLLAHFCGKGPLQSLLTGRDT 1010

Query: 772  ---------------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
                           +  +D++R +AA    +   +V+ ++R   K    ++IYG     
Sbjct: 1011 REARGSAPDDESETSKEPIDLYREMAALYAEIPPSQVTKELRDKVKVTCLALIYGSGTCT 1070

Query: 817  LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            +A Q+ I  + A+ +  ++   FP +  +I       R++G+V T+ GRR +  E  S  
Sbjct: 1071 IARQMNISLAAASAFRSKFLFVFPDVSHFIRSIVAKGREDGFVTTLTGRRRYIPEAKSNS 1130

Query: 877  SSIRNINERAAINAPIQGSAADITRRAMISVHKSL-----EDHKLATKMLLQIHDELVFE 931
            S +R + ER ++N+ IQGSA+DI + AM+ +   L     + H L  ++LL +HDELV  
Sbjct: 1131 SHVRALGERLSVNSCIQGSASDIMKIAMMRLQAELLSFPWDPHALPPRVLLSVHDELVMH 1190

Query: 932  VPEEEITTASQIIVHSMEKACLPK-INLRVPLKVNIKVSNNW 972
               + +   S++I     + CL + + + VPL V+I     W
Sbjct: 1191 CSLKHLQPLSKMI-----RKCLTENMPVDVPLDVSISAGPTW 1227



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 18/147 (12%)

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           LLR   +V+ LL      + PM  +++ +++TGI I     +Q+ + + + L+++E+ + 
Sbjct: 673 LLRCHQLVQPLLTQ----EIPMASLLALLDVTGIAIQPHCHEQLKSALDEALVAVEKEVN 728

Query: 615 DLSG-EKFNLSSPKQLGDILFTKLKFPSGAKT-------------KTGQWKTTAQDLEQI 660
             +G     +SSP QL ++LF  L  P  A+T             K    ++TA+++ Q 
Sbjct: 729 RTAGTSSVQVSSPAQLSNLLFDHLALPLPARTFAAVRGNRPRRAAKRTLARSTAEEILQE 788

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADS 687
               +P++  I  +R L+K++STY +S
Sbjct: 789 IVDLHPVVPLIQNFRSLAKLRSTYLES 815


>gi|113971051|ref|YP_734844.1| exonuclease IX [Shewanella sp. MR-4]
 gi|114048276|ref|YP_738826.1| exonuclease IX [Shewanella sp. MR-7]
 gi|123030445|sp|Q0HSY6|XNI_SHESR RecName: Full=Protein Xni
 gi|123324832|sp|Q0HGN0|XNI_SHESM RecName: Full=Protein Xni
 gi|113885735|gb|ABI39787.1| 5'-3' exonuclease [Shewanella sp. MR-4]
 gi|113889718|gb|ABI43769.1| 5'-3' exonuclease [Shewanella sp. MR-7]
          Length = 260

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 135/266 (50%), Gaps = 14/266 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P      D L  + ++  C  L ++          +H A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPD-ENDMDSL-TDRVSVACTKLLRIHH-------PTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++   ++  I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPDYKKGRKPMPEPLAAGLSALQEHLKSLPIQSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL  P    +D   ++ ++I  + +K G+   + + L A
Sbjct: 112 AMKTAKAQGEAVIVSTDKGFSQLNHPRISQWDHFNQQYLNIAELEQKLGVDRNQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ +  L  +  + S +  K+ ++ + E  + ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLRTFRTLATLFSSLSNLGAKQAKK-LAEGRDMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGP 270
           KL  L+TD+P+ I L        NGP
Sbjct: 231 KLAQLQTDLPLNINLRDF---RVNGP 253


>gi|254775082|ref|ZP_05216598.1| hypothetical protein MaviaA2_10471 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 318

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+++  P      DG PVNA+ GF + L  ++   R     S   V  D
Sbjct: 5   LVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFLDSLAVVITQQR----PSRLVVCLD 60

Query: 67  YP-AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 FR ++ P YKA+R             ++P+ L PQ+ ++    +A+GIP    +
Sbjct: 61  LDWRPQFRVDLVPSYKAHRVAEAEPAGEPDVEEVPDDLTPQIDIIAELLEAYGIPTAGAE 120

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIE 166
           GFEADD++ T    A +    V ++S D+DL+Q+VS    P   LY      K       
Sbjct: 121 GFEADDVLGTLA--ARERDDPVVVVSGDRDLLQVVSDDPVPVRVLYLGRGLSKATLFGPV 178

Query: 167 HVIKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V + +G+P ++       L  L GD  D +PG+PG+G KTAA LL ++G+L  +L  A 
Sbjct: 179 EVAEHYGVPVDRAGPAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLHRVLAAAH 238

Query: 223 RIKQKKR---RENILEYAETARLSRKLVMLRTDVPITI 257
             K K     R  +L   +    +  +V + TD P+ +
Sbjct: 239 DPKSKTAKGLRTKLLGALDYIEAAGAVVRVATDAPVKL 276


>gi|323180231|gb|EFZ65783.1| exonuclease xni [Escherichia coli 1180]
          Length = 251

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     
Sbjct: 40  SQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTS 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+++     L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +
Sbjct: 160 VQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 219 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|269126556|ref|YP_003299926.1| 5'-3' exonuclease [Thermomonospora curvata DSM 43183]
 gi|268311514|gb|ACY97888.1| 5'-3' exonuclease [Thermomonospora curvata DSM 43183]
          Length = 312

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 132/279 (47%), Gaps = 23/279 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M   + L L+D  S  +RAF+  P      DG PVNA+ G  +M+ +L+ +     +   
Sbjct: 1   MAPMDALMLLDTPSLYFRAFFGVPESVTAPDGTPVNAVRGLIDMIARLVADRSPARLVCC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +  PA  FR    P YKA+R       ++P+ L  QLP++    +A G+    + G
Sbjct: 61  MDADWR-PA--FRVAALPSYKAHRVAADGGDQVPDALAAQLPIIDAVLEAAGLARAGVPG 117

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDI---EHV 168
           +EADD+I T        G AV I++ D+DL QLV    P   LY       + +   E V
Sbjct: 118 YEADDVIGTLAVRHAAGGGAVDIVTGDRDLFQLVDRRGPIQVLYTARGVRNLQVMGEEEV 177

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIK- 225
             ++GIP        AL GD  D +PG+PG+G KTAA L+  +G++  IL  ++A   + 
Sbjct: 178 AARYGIPGRAYGEYAALRGDPSDGLPGVPGVGDKTAAALVSRFGSVAGILQALDAGVTEG 237

Query: 226 ----QKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
                ++R E   EY   A    K+V    D P    LE
Sbjct: 238 FPAGSRRRLEAAREYLAAAETVVKVVT-DIDAPELTALE 275


>gi|31793273|ref|NP_855766.1| 5'-3' exonuclease [Mycobacterium bovis AF2122/97]
 gi|31618865|emb|CAD96970.1| 5'-3' exonuclease [Mycobacterium bovis AF2122/97]
          Length = 374

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 33/288 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + 
Sbjct: 59  SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVIIQQRPNRLA--VCLD 116

Query: 65  FDYPAVTFRNEIYPDYKANR---------P---KIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D+    FR ++ P YKA+R         P   ++P+ L PQ+ ++     AFGI     
Sbjct: 117 LDW-RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 175

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            GFEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K      
Sbjct: 176 PGFEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGP 233

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A
Sbjct: 234 AEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAA 293

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
              K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 294 DDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 341


>gi|110642939|ref|YP_670669.1| exonuclease IX [Escherichia coli 536]
 gi|191171306|ref|ZP_03032856.1| exodeoxyribonuclease-9 [Escherichia coli F11]
 gi|300976433|ref|ZP_07173418.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 200-1]
 gi|269849729|sp|Q0TE61|XNI_ECOL5 RecName: Full=Protein Xni
 gi|110344531|gb|ABG70768.1| exodeoxyribonuclease IX [Escherichia coli 536]
 gi|190908606|gb|EDV68195.1| exodeoxyribonuclease-9 [Escherichia coli F11]
 gi|300308514|gb|EFJ63034.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 200-1]
 gi|320194939|gb|EFW69568.1| DNA polymerase I [Escherichia coli WV_060327]
 gi|324015362|gb|EGB84581.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 60-1]
          Length = 251

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LENHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|320173217|gb|EFW48427.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
          Length = 251

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHSVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|260205380|ref|ZP_05772871.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis K85]
          Length = 318

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 141/286 (49%), Gaps = 33/286 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +  D
Sbjct: 5   LVILDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLDLD 62

Query: 67  YPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      G
Sbjct: 63  WRP-QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPG 121

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEH 167
           FEADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K        
Sbjct: 122 FEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAE 179

Query: 168 VIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A  
Sbjct: 180 VAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADD 239

Query: 224 IKQ---KKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
            K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 240 RKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 285


>gi|238796595|ref|ZP_04640102.1| Uncharacterized exonuclease xni [Yersinia mollaretii ATCC 43969]
 gi|238719573|gb|EEQ11382.1| Uncharacterized exonuclease xni [Yersinia mollaretii ATCC 43969]
          Length = 252

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 139/264 (52%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             I    + L +L+Q+S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CIKACQHALQQLIQHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  P+YKA R  +P+ L  ++P +R A  + GI      G EADD+ 
Sbjct: 48  VFDEDDRSESWRHQCLPEYKAGRSPMPDNLQQEMPFIREAFNSLGIACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLATKIGDAGHQVTIVSTDKGYCQLLAPHVQIRDYFQKRWLDMPFVKQEFGVLPHQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAALLLQ+   LE +      + +K R++ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTAALLLQQANTLEALYQELESVPEKWRKK-LQQHQEMAL 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           + +++  L+TD+P++  L+ L L+
Sbjct: 227 ICKQIATLKTDLPLSGNLQQLRLQ 250


>gi|323941520|gb|EGB37702.1| 5'-3' exonuclease [Escherichia coli E482]
          Length = 251

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSRGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|308232029|ref|ZP_07663975.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu001]
 gi|308215233|gb|EFO74632.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu001]
          Length = 313

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 83/275 (30%), Positives = 136/275 (49%), Gaps = 31/275 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +  D+ 
Sbjct: 2   LLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLDLDWR 59

Query: 69  AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      GFE
Sbjct: 60  P-QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFE 118

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHVI 169
           ADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K        V 
Sbjct: 119 ADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVA 176

Query: 170 KKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   K
Sbjct: 177 ERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRK 236

Query: 226 Q---KKRRENILEYAETARLSRKLVMLRTDVPITI 257
               K  R  +L  +   + + ++V + TD P+T+
Sbjct: 237 TTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTL 271


>gi|218547683|ref|YP_002381474.1| exonuclease IX [Escherichia fergusonii ATCC 35469]
 gi|218355224|emb|CAQ87831.1| exonuclease IX (5'-3' exonuclease) [Escherichia fergusonii ATCC
           35469]
          Length = 281

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 134/264 (50%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQP----THVVA 77

Query: 64  IFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD       +R++  PDYKA RP +P+ L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRNSGWRHQRLPDYKAGRPPMPDELHNEMPTLRAAFEQRGVPCWSATGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LEMHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           L R +  L+TDV I   L+ L L+
Sbjct: 257 LCRDIARLQTDVHIDGNLQQLRLK 280


>gi|293394689|ref|ZP_06638981.1| exodeoxyribonuclease IX [Serratia odorifera DSM 4582]
 gi|291422815|gb|EFE96052.1| exodeoxyribonuclease IX [Serratia odorifera DSM 4582]
          Length = 252

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 45  LWKLLQNSRKESIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102
           L +L+Q+S      SH   +FD    + ++R+++ PDYKA R  +PE L  ++P +R A 
Sbjct: 33  LRQLIQHSS----PSHAVAVFDEDDRSDSWRHQLLPDYKAGRSPMPENLQQEMPQLRQAF 88

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK 162
           +A G+      G EADD+ AT        G  VTI+STDK   QL+SP   + D  ++  
Sbjct: 89  EALGVACWHSAGNEADDLAATLAVKVAAGGHQVTIVSTDKGYCQLLSPKVQIRDYFQKRW 148

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
           +D+  V +++G+ P+++     L G     IPG+ GIG KTA  LLQ+ G+L+ +    +
Sbjct: 149 LDMPFVQQEFGVLPQQLADYWGLAGIGSSKIPGVAGIGPKTAVQLLQQAGSLDGVYQQLA 208

Query: 223 RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            I +K R + + ++ E A + +++  LRTD+ +   L+ L L +
Sbjct: 209 AIPEKWRSK-LEQHREMAYVCKQIATLRTDLQLNGNLQQLRLPE 251


>gi|323498638|ref|ZP_08103630.1| flap endonuclease-like protein [Vibrio sinaloensis DSM 21326]
 gi|323316336|gb|EGA69355.1| flap endonuclease-like protein [Vibrio sinaloensis DSM 21326]
          Length = 258

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 131/268 (48%), Gaps = 16/268 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N IA       + L     ES  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---------DPNDIARTITTTSRTLNKIISESQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P+YK NR  +PE L+  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQERGWRAEILPEYKQNRKPMPEPLMQGLEAIQDAWWHLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LAMKVANHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDDPFIEKEFGVKPTQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PG+G K A  +L ++  +E     AS     K R+ + ++ ++AR  
Sbjct: 175 GLTGVSSSQVPGVPGVGPKAAKEILTQFATIEEAF--ASEELAAKYRKKLDQHIDSARRC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+TD+ +   L+ +      GP+
Sbjct: 233 KQIAALKTDIELGFNLQDIRF---TGPK 257


>gi|289811950|ref|ZP_06542579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 172

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 5/172 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
               AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+P
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVP 172


>gi|227888339|ref|ZP_04006144.1| exonuclease IX [Escherichia coli 83972]
 gi|300979389|ref|ZP_07174533.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 45-1]
 gi|301049438|ref|ZP_07196399.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 185-1]
 gi|331648526|ref|ZP_08349614.1| exodeoxyribonuclease IX [Escherichia coli M605]
 gi|269849480|sp|B7MLB9|XNI_ECO45 RecName: Full=Protein Xni
 gi|269849491|sp|Q1R7P3|XNI_ECOUT RecName: Full=Protein Xni
 gi|269849513|sp|Q8FEF2|XNI_ECOL6 RecName: Full=Protein Xni
 gi|269849728|sp|A1AEY5|XNI_ECOK1 RecName: Full=Protein Xni
 gi|227834608|gb|EEJ45074.1| exonuclease IX [Escherichia coli 83972]
 gi|281179799|dbj|BAI56129.1| exonuclease IX [Escherichia coli SE15]
 gi|300298788|gb|EFJ55173.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 185-1]
 gi|300409489|gb|EFJ93027.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 45-1]
 gi|307554770|gb|ADN47545.1| exodeoxyribonuclease IX [Escherichia coli ABU 83972]
 gi|307625632|gb|ADN69936.1| exonuclease IX [Escherichia coli UM146]
 gi|315289348|gb|EFU48743.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 110-3]
 gi|315293771|gb|EFU53123.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 153-1]
 gi|323950985|gb|EGB46861.1| 5'-3' exonuclease [Escherichia coli H252]
 gi|323957190|gb|EGB52914.1| 5'-3' exonuclease [Escherichia coli H263]
 gi|324005647|gb|EGB74866.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 57-2]
 gi|330908827|gb|EGH37341.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331042273|gb|EGI14415.1| exodeoxyribonuclease IX [Escherichia coli M605]
          Length = 251

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|306812321|ref|ZP_07446519.1| exonuclease IX [Escherichia coli NC101]
 gi|331658912|ref|ZP_08359854.1| exodeoxyribonuclease IX [Escherichia coli TA206]
 gi|269849484|sp|B7MZ94|XNI_ECO81 RecName: Full=Protein Xni
 gi|305854359|gb|EFM54797.1| exonuclease IX [Escherichia coli NC101]
 gi|315298845|gb|EFU58099.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 16-3]
 gi|331053494|gb|EGI25523.1| exodeoxyribonuclease IX [Escherichia coli TA206]
          Length = 251

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDMHIDGNLQQLRL 249


>gi|331684420|ref|ZP_08385012.1| 5-3 exonuclease [Escherichia coli H299]
 gi|331078035|gb|EGI49241.1| 5-3 exonuclease [Escherichia coli H299]
          Length = 251

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 135/263 (51%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N + + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVVGIGPKSATQLLVEFKSLEGIYENLNAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|301325747|ref|ZP_07219199.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 78-1]
 gi|300847446|gb|EFK75206.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 78-1]
          Length = 251

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPYVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|238763990|ref|ZP_04624946.1| Uncharacterized exonuclease xni [Yersinia kristensenii ATCC 33638]
 gi|238697807|gb|EEP90568.1| Uncharacterized exonuclease xni [Yersinia kristensenii ATCC 33638]
          Length = 251

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 85/263 (32%), Positives = 140/263 (53%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P          VNA     + L +LL +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPC---------VNACQ---HALQQLLSHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++PL+R A  + G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQRLPDYKAGRSPMPDNLQQEMPLIREAFHSLGVNCWSSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLAIKIGGAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPYQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTA LLLQ+  +LE +      I +K R++ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTATLLLQQASSLEELYQQLDSIPEKWRKK-LQQHQEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           + +++  L+TD+P++  L+ L L
Sbjct: 227 ICKQIATLKTDLPLSGNLQQLRL 249


>gi|294139913|ref|YP_003555891.1| exodeoxyribonuclease IX [Shewanella violacea DSS12]
 gi|293326382|dbj|BAJ01113.1| exodeoxyribonuclease IX [Shewanella violacea DSS12]
          Length = 252

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 15/262 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R   A P      +GL  N +A  CN L K  Q        +H A++
Sbjct: 2   NTFLIIDGLNLVRRIHAAQPN-ENDTNGLD-NRVASACNKLLKYHQ-------PTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R +++ DYK  R  +PE L   LP ++L      + +++    EADD+IAT 
Sbjct: 53  WDGKEISWRKQLFEDYKKGRKPMPEALSEYLPGLKLHLAKIHVNSLDAAS-EADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                  G    I+STDK   QL  P    +D   +  + +E   +K G+   + +   A
Sbjct: 112 ASKLATSGGEAIIVSTDKGFTQLNHPKIKRWDHFNKAYLTVEEREQKLGVQHSQFIDYLA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETARL 242
           L GDS + IPG+PGIG K+A  LL+ + +L NI   I+    KQ K+ E   E  + ARL
Sbjct: 172 LAGDSGNKIPGVPGIGPKSAVELLKIFRSLANIYSSIDEVGAKQAKKLE---EGKQMARL 228

Query: 243 SRKLVMLRTDVPITIPLEHLIL 264
           S KLV L+ D+P+   L    L
Sbjct: 229 SYKLVQLQLDMPLKANLSQFRL 250


>gi|294811677|ref|ZP_06770320.1| Putative 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|326440139|ref|ZP_08214873.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|294324276|gb|EFG05919.1| Putative 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 329

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 133/272 (48%), Gaps = 28/272 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RA++  P   R  DG PVNA+ G    + +L+Q+ R + + + +   
Sbjct: 26  RRLMLLDTASLYFRAYFGVPDTVRAPDGTPVNAVRGLLEFIGRLVQDHRPDDLVACWDND 85

Query: 65  FDYPAVTFRNEIYPDYKANRPKI-----------PEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +      +R E+ P YKA+R  +           P+ L PQ+P++    +A GI  +   
Sbjct: 86  W---RPHWRVELIPSYKAHRVAVETEAGPDEEEAPDTLTPQVPVIAEVLEALGIARVGAD 142

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC------LYDTVKEEKIDIEH 167
           G+EADD+I T T  A      V I++ D+DL QLV           L      +  D   
Sbjct: 143 GYEADDVIGTLTARATGP---VDIVTGDRDLFQLVDDARGRRVLYPLKGVGTLQTTDEGW 199

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----ASR 223
           + +++G+       L  L GD  D +PG+PGIG KTAA LL  +G+L  I+      ASR
Sbjct: 200 LRERYGVDGPGYADLALLRGDPSDGLPGVPGIGEKTAAKLLDAFGDLAGIMAAVDDPASR 259

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           +   +RR  + E      ++ K+V + TD P+
Sbjct: 260 LTPAQRR-RLDEARGYVAVAPKVVRVATDAPL 290


>gi|156630385|sp|Q8EGP9|XNI_SHEON RecName: Full=Protein Xni
          Length = 261

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 137/256 (53%), Gaps = 13/256 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +         ++A  C  L ++          +H AV+
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDENDMESLTERVSVA--CTKLLRIHH-------PTHVAVV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++   Q   I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPDYKKGRKPMPEPLAAGLIALQEHLQNLQIQSI-YAAAEADDVIATL 111

Query: 125 -TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            T  A+ +G A+ I+STDK   QL  P    +D   ++ ++I  + +K G+   + + L 
Sbjct: 112 ATKTAKAQGEAL-IVSTDKGFSQLNHPRISQWDHFNQQYLNIAELEQKLGVDRSQFLDLM 170

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS + IPGIPGIG K+AA LL+ +  L  +  +   +  K+ ++ + E  + ARLS
Sbjct: 171 ALAGDSGNKIPGIPGIGPKSAAELLRTFRTLATLFSSLPNLGAKQAKK-LAEGRDMARLS 229

Query: 244 RKLVMLRTDVPITIPL 259
            KLV L+TD+P+ I L
Sbjct: 230 YKLVQLQTDLPLNINL 245


>gi|29833256|ref|NP_827890.1| 5'-3' exonuclease [Streptomyces avermitilis MA-4680]
 gi|29610378|dbj|BAC74425.1| putative 5'-3' exonuclease [Streptomyces avermitilis MA-4680]
          Length = 309

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 142/282 (50%), Gaps = 31/282 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q    L L+D +S  +RA++  P   +  DG PVNA+ G    + +L+++ R + + +  
Sbjct: 3   QPTRRLMLLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLEFIDRLVKDHRPDELVACM 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAI 110
               D+    +R ++ P YKA+R            ++P+ L PQ+P++     A GI  +
Sbjct: 63  DA--DWRP-QWRVDLIPSYKAHRVAEERESGPDEEEVPDTLSPQVPVIENVLDALGIARV 119

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI- 169
            ++G+EADD+I T+T  A  +G  V I++ D+DL QLV     +      + + +  +  
Sbjct: 120 GVEGYEADDVIGTFT--ARAKG-PVDIVTGDRDLYQLVDDERGIRVLYPLKGVGLLQLTD 176

Query: 170 -----KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
                +K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  I+      
Sbjct: 177 EAWLREKYGVDGGGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIMAAVDDP 236

Query: 225 KQK---KRRENILEYAETARLSRKLVMLRTDVP-----ITIP 258
           K K    +R+ + E      ++ K+V +  DVP     IT+P
Sbjct: 237 KAKLTPSQRKRLDESRPYLAVAPKVVRVAGDVPLPDVDITLP 278


>gi|194434669|ref|ZP_03066923.1| exodeoxyribonuclease-9 [Shigella dysenteriae 1012]
 gi|194417066|gb|EDX33181.1| exodeoxyribonuclease-9 [Shigella dysenteriae 1012]
 gi|332089093|gb|EGI94203.1| exonuclease xni [Shigella dysenteriae 155-74]
          Length = 251

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPCIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|117625026|ref|YP_854014.1| exodeoxyribonuclease IX [Escherichia coli APEC O1]
 gi|115514150|gb|ABJ02225.1| exodeoxyribonuclease IX [Escherichia coli APEC O1]
          Length = 214

 Score =  122 bits (307), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     
Sbjct: 3   SQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSAS 62

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 63  GNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFG 122

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+++     L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +
Sbjct: 123 VQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-L 181

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 182 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 212


>gi|332087539|gb|EGI92667.1| exonuclease xni [Shigella boydii 5216-82]
          Length = 251

 Score =  122 bits (307), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPCIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LEPHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus]
          Length = 482

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 104/183 (56%), Gaps = 2/183 (1%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-- 789
           K R + ++ P    +SADYSQ+E+R++AH++    L +VF +  D+ R +AA + G    
Sbjct: 214 KPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGKK 273

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
            E ++ + RR  K + + ++YG S   L  QLR+ R EA    +     FP + E+++K 
Sbjct: 274 AEDITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTFPKLTEFLKKV 333

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K   ++ GYVET+ GRR +  +INS   + R+  ER A N   QGSAAD+ + A  +V  
Sbjct: 334 KEDCKECGYVETLLGRRRYLPQINSTDKAERSRAERQAANTTTQGSAADLLKLAATNVAA 393

Query: 910 SLE 912
            LE
Sbjct: 394 RLE 396


>gi|170681600|ref|YP_001744962.1| exonuclease IX [Escherichia coli SMS-3-5]
 gi|170519318|gb|ACB17496.1| exodeoxyribonuclease-9 [Escherichia coli SMS-3-5]
          Length = 251

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEIPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|76665032|emb|CAJ17956.1| 5'-3' exonuclease [Candidatus Phytoplasma solani]
          Length = 252

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD   +T R++IY DYK  RP  P  L+ Q+PL++      G+       +EADDII 
Sbjct: 3   VAFDTHHLTKRHQIYDDYKKGRPITPSELISQIPLIKQYLTLIGVKHHYQPEYEADDIIG 62

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDT-VKEEK-IDIEHVIKKWGIPPEK 178
           T    A K+   V I S+D+DL+QLV    T CL    +KE K  D + +++++G+   +
Sbjct: 63  TLAKKASKKNKKVFIYSSDQDLLQLVDANITVCLIKKGLKEIKCFDPQTLLEEYGLKEYQ 122

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+  +AL GD  DNI G+ GIG KTA  LLQ Y NL N+LI   +IK  + +E I    +
Sbjct: 123 MIDYKALIGDPSDNIKGVVGIGPKTAQKLLQTYDNLNNLLICLDQIK-PRLKEQIKNSEK 181

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
             +LS+ L  +  +VP+        ++ C+  ++ +F + ++F +L
Sbjct: 182 DLKLSKILTTIEVEVPLPFEFNQTQMQACSYQKIKAFYEEMDFRRL 227


>gi|311278246|ref|YP_003940477.1| 5'-3' exonuclease, SAM-fold domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747441|gb|ADO47193.1| 5'-3' exonuclease, SAM-fold domain protein [Enterobacter cloacae
           SCF1]
          Length = 277

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 3/225 (1%)

Query: 49  LQNSRKESIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           L+   + S  +H   +FD  A    +R++  PDYKA R  +P+ L  ++P +R A + +G
Sbjct: 46  LEQLIRHSQPTHAVAVFDDEARNSGWRHQRLPDYKAGRAPMPDDLHSEMPAIRAAFEQYG 105

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +P    QG EADD+ AT        G   TI+STDK   QL+SPT  + D  ++  +D  
Sbjct: 106 VPCWGAQGNEADDLAATLAIKVANAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAP 165

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            +  ++G+ P+++     L G     +PG+ GIG K+AA LL E+ +LE I      + +
Sbjct: 166 FIASEFGVAPQQLPDYWGLAGIGSSRVPGVAGIGPKSAAQLLNEFQSLEGIYARLDDVPE 225

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           K R++ +  + E A + R +  L+TD+ +   L+ L L     P+
Sbjct: 226 KWRKK-LEAHQEMAFICRDVARLQTDLQLDGNLQQLRLVKRGAPQ 269


>gi|170766180|ref|ZP_02900991.1| exodeoxyribonuclease-9 [Escherichia albertii TW07627]
 gi|170125326|gb|EDS94257.1| exodeoxyribonuclease-9 [Escherichia albertii TW07627]
 gi|323966776|gb|EGB62207.1| 5'-3' exonuclease [Escherichia coli M863]
 gi|323978591|gb|EGB73673.1| 5'-3' exonuclease [Escherichia coli TW10509]
          Length = 251

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LEMHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley]
 gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley]
          Length = 608

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 132/512 (25%), Positives = 236/512 (46%), Gaps = 65/512 (12%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++   
Sbjct: 95  HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPV 154

Query: 517 RKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             E +K+      +K     DKI       D   + +A    + IL   LL +   +V +
Sbjct: 155 TAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYA--GMDTILVSRLLGKVAPLVPE 212

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI---SKNLLSLEENIYDLSGEKF 621
             H     +  + +V+S +E TG  +D D  +++SA++   S++  ++    Y +     
Sbjct: 213 SSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVARYAYGVD---- 268

Query: 622 NLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +++S ++L D L  T +K     +T TG+ +  A+ LE +    N + K  +E ++    
Sbjct: 269 SVNSTEKLADGLERTGVKIK--GRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSW 326

Query: 681 KSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           + T+   + N I +R    RVH   +     T R+++  P+ QN+P    +   +RR F+
Sbjct: 327 EKTW---VRNFIERRDANDRVHPGINPLQARTARMSTTSPSAQNLPANDWM---VRRCFL 380

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P + ++S DY   ELR+LA +A    + + FE   D+H+ V A+  G++        R
Sbjct: 381 ADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQ-VTADAAGMD--------R 431

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           +  K  NF  +YG    +LAT   I   EA   +  +   +PG+ +  +  +      GY
Sbjct: 432 KVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTDLSKSLQREAANLGY 491

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V T  GRR+  D    P          AA+N  +Q ++ D+T  A++ +H    D  LA 
Sbjct: 492 VVTPTGRRLPVD----PDRGY------AALNYMVQSTSRDVTASAVLRLH----DAGLAP 537

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            + L IHDE++  VPE E    ++ I   ME+
Sbjct: 538 MIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQ 569


>gi|313233190|emb|CBY24305.1| unnamed protein product [Oikopleura dioica]
          Length = 1902

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 152/311 (48%), Gaps = 22/311 (7%)

Query: 666  PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            P I+N++E+R+  K    ++D L      R  R+++   L +  TGR++   P+LQ +  
Sbjct: 1606 PRIRNLIEFRRAQK---AFSDLLTYKNASRDDRIYSTPVLIN-RTGRISMDNPSLQMVQN 1661

Query: 726  KTDLGQKI---RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
            + +   KI   R  F + P K  IS DY Q+ELR+LA ++    L   F +  D    + 
Sbjct: 1662 EFECCGKIIKVRNCFRANPKKIFISVDYRQLELRVLALLSGDEGLQASFIDHEDPFVSIG 1721

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
             +   +  E++S   R   K + + +IYG+    L+T L +   EA +    +   +PG+
Sbjct: 1722 RK--WLKRERISVAQRTQVKGLVYGVIYGMGNKTLSTTLGVSIEEAKNISSEFMSSYPGM 1779

Query: 843  HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             +++         N Y ET+ GRR  +D   S  +       R A+N  IQGSAADI + 
Sbjct: 1780 QKFLVDVDKSASSNLYTETLIGRRRSFDNYTSRAA-------RVAVNTKIQGSAADIVKI 1832

Query: 903  AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN-LRVP 961
              +   + +++  +  K++LQIHDEL+FEV E +     + ++  + K  LP  N   V 
Sbjct: 1833 GTVRAARKIKETGINAKLVLQIHDELLFEVEESQ-----KGLLEDILKKVLPLENEYAVR 1887

Query: 962  LKVNIKVSNNW 972
              V +K   +W
Sbjct: 1888 FDVKVKKGLSW 1898


>gi|37679067|ref|NP_933676.1| exonuclease IX [Vibrio vulnificus YJ016]
 gi|81758154|sp|Q7MN34|XNI_VIBVY RecName: Full=Protein Xni
 gi|37197809|dbj|BAC93647.1| 5'-3' exonuclease [Vibrio vulnificus YJ016]
          Length = 259

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 131/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P  +        N I   C  L +++     ES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDPTDI-----ANTIQNTCRTLQRII----SESHPTHIVAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P+YK  R  +PE LL  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHLGSDRGWRAEILPEYKQGRKPMPEPLLNGLEKIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P+++    
Sbjct: 115 LACKVAQHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDQPFIEQEFGVKPQQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   + GIPGIG K A  +L ++ ++E   ++      KK R    ++ E AR  
Sbjct: 175 GLTGISSSQVTGIPGIGPKAAKEILSQFDDIEQAFLSPDL--PKKYRTKFDQHIELARRC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ L
Sbjct: 233 KRVSALKTDIELGFNLQDL 251


>gi|297195391|ref|ZP_06912789.1| 5'-3' exonuclease [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152763|gb|EDY63147.2| 5'-3' exonuclease [Streptomyces pristinaespiralis ATCC 25486]
          Length = 306

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 140/277 (50%), Gaps = 42/277 (15%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R + + + +    D
Sbjct: 5   LMLLDTASLYFRAYHGVPDSVRAPDGTPVNAVRGLIDFIARLVQDHRPDDLVACWDN--D 62

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +    +R ++ P YKA+R            ++P+ L PQ+P++     A GI  +   G+
Sbjct: 63  WRP-QWRVDLIPSYKAHRVAAEHDQGPDEEEVPDTLTPQIPVIEAVLAAVGIARVGADGY 121

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI------------ 163
           EADDII T T  A   G  V I++ D+DL QLV       D  +E ++            
Sbjct: 122 EADDIIGTLT--ARATG-PVDIVTGDRDLFQLV-------DDARERRVLYPLKGVGTLQT 171

Query: 164 -DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--- 219
            D   + +++G+     V L  L GD  D +PG+PGIG KTAA LL  YG+L+ I+    
Sbjct: 172 TDEAWLRERYGVDGPGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDTYGDLDGIMAAVG 231

Query: 220 -NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
              S++   +RR  + E      ++ K+V + +DV +
Sbjct: 232 DRGSKLTPTQRRR-LDEARAYVAVAPKVVRVASDVAL 267


>gi|331664359|ref|ZP_08365265.1| 5-3 exonuclease [Escherichia coli TA143]
 gi|331674289|ref|ZP_08375049.1| 5-3 exonuclease [Escherichia coli TA280]
 gi|331058290|gb|EGI30271.1| 5-3 exonuclease [Escherichia coli TA143]
 gi|331068383|gb|EGI39778.1| 5-3 exonuclease [Escherichia coli TA280]
          Length = 251

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD       +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRNSGWRHQRLPDYKAGRPPMPEELHDEMPALRTAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|291440662|ref|ZP_06580052.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672]
 gi|291343557|gb|EFE70513.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672]
          Length = 301

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 25/228 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+++ R      H     D  
Sbjct: 2   LLDTASLYFRAYFGVPESVRAPDGTPVNAVRGLLDFIDRLVKDHR----PGHLVACMDAD 57

Query: 69  -AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + ++ +E
Sbjct: 58  WRPQWRVELIPSYKAHRVAREQAAGPDEEEVPDTLSPQVPVIEAVLDALGIARVGVERYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKIDIEHVIK- 170
           ADD+I T+T  A  EG  V I++ D+DL QLV        LY    V   ++  E V++ 
Sbjct: 118 ADDVIGTFT--ARAEG-PVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQVTDEAVLRE 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  IL
Sbjct: 175 KYGVDGRGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIL 222


>gi|332999551|gb|EGK19136.1| exonuclease xni [Shigella flexneri VA-6]
          Length = 251

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA+RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKADRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTLAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|310825374|ref|YP_003957732.1| 5'-3' exonuclease family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398446|gb|ADO75905.1| 5'-3' exonuclease family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 296

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 101/292 (34%), Positives = 140/292 (47%), Gaps = 20/292 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDG+  ++RA ++        DG  V A  G  + L  LL +  K    +H AV FD
Sbjct: 3   LHLVDGTYELFRAHFSPRPGHSAPDGQDVKATVGLMSSLLALLHD--KAEAVTHLAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  +FRN ++  YK++   +P  L  Q  L   A +A G+ A  ++  EADD +AT   
Sbjct: 61  NPIRSFRNTLFAGYKSDE-GVPPELHAQFDLAEEAVRALGVTAWSMKDHEADDALATAAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               +   V +++ DKDL Q V     +  D  +E+++D E V  K G+PP  +  L AL
Sbjct: 120 RWAAQVEQVRLLTPDKDLGQCVRGRHVVQVDRRQEKELDEEAVRAKLGVPPASVPDLLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL-----EYAETA 240
            GD  D IPG+ G G K AA LL  YG+LE I   A+  K + R    L     E+ E A
Sbjct: 180 VGDEADGIPGLTGFGEKGAATLLTAYGHLEAIPAEAADWKVRPRGAERLAATLREHREEA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINRVATT 291
            L R+L  L TD P+   L  L  +    GP          F  L NR+  T
Sbjct: 240 LLYRRLATLVTDAPLKESLAALAWKGVPRGP----------FEALCNRLGVT 281


>gi|108799445|ref|YP_639642.1| 5'-3' exonuclease [Mycobacterium sp. MCS]
 gi|119868558|ref|YP_938510.1| 5'-3' exonuclease [Mycobacterium sp. KMS]
 gi|108769864|gb|ABG08586.1| 5'-3' exonuclease [Mycobacterium sp. MCS]
 gi|119694647|gb|ABL91720.1| 5'-3' exonuclease [Mycobacterium sp. KMS]
          Length = 316

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 139/279 (49%), Gaps = 36/279 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+++A P      DG PVNA+ GF + +  L+   R     S   V  D
Sbjct: 5   LLLLDGASMWFRSYFALPSSITAPDGRPVNAVRGFLDTVAMLIGRER----PSRLVVCRD 60

Query: 67  ---YPAVTFRNEIYPDYKANR---PK--------IPEMLLPQLPLVRLATQAFGIPAIEI 112
               P   +R ++ P YKA+R   P+        +P+ L PQ+ ++     AFGIP    
Sbjct: 61  DDWRP--QWRVDLVPSYKAHRVAEPQAAGTDVEVVPDELTPQVDMIMEMLDAFGIPHAGA 118

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            G+EADD++ T     E++   V ++S D+D++Q+V         LY      K      
Sbjct: 119 PGYEADDVLGTLAVAEERD--RVIVVSGDRDMLQVVRDDPVEVRVLYLGRGMSKATLFGP 176

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V  ++ +P E+       L  + GD  D +PG+PG+G KTAA LL ++G+LE I+  A
Sbjct: 177 AEVADQYAVPKERAGAAYAELALMRGDPSDGLPGVPGVGEKTAATLLAQFGSLEAIVAAA 236

Query: 222 SRIKQKKR---RENILEYAETARLSRKLVMLRTDVPITI 257
           +  K K     R+ +L  A+    +  +V + TD P+T+
Sbjct: 237 NDPKSKMSKAYRKKMLAAADYIEAAEPVVRVATDAPVTM 275


>gi|269849492|sp|B7LVW5|XNI_ESCF3 RecName: Full=Protein Xni
 gi|324111205|gb|EGC05188.1| 5'-3' exonuclease [Escherichia fergusonii B253]
 gi|325496159|gb|EGC94018.1| exonuclease IX [Escherichia fergusonii ECD227]
          Length = 251

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 23/265 (8%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHVVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD       +R++  PDYKA RP +P+ L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRNSGWRHQRLPDYKAGRPPMPDELHNEMPTLRAAFEQRGVPCWSATGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YAETA 240
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++  LE + E A
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK--LEMHKEMA 225

Query: 241 RLSRKLVMLRTDVPITIPLEHLILE 265
            L R +  L+TDV I   L+ L L+
Sbjct: 226 FLCRDIARLQTDVHIDGNLQQLRLK 250


>gi|323188784|gb|EFZ74069.1| exonuclease xni [Escherichia coli RN587/1]
          Length = 251

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD       +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRNSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|261822613|ref|YP_003260719.1| exonuclease IX [Pectobacterium wasabiae WPP163]
 gi|261606626|gb|ACX89112.1| 5'-3' exonuclease, SAM-fold domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 264

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 138/263 (52%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             I    + L +L+QNS+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CITACQHALHQLIQNSQ----PTHAVA 47

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R+ + PDYKA R  +P+ L  +LP ++ A    G+ +    G EADD+ 
Sbjct: 48  VFDDDDRDTSWRHHLLPDYKAGRAPMPDNLQQELPQIKAAFSTMGVASWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL++P   + D  ++  +D+  + +++G+ P+++  
Sbjct: 108 ATLAVKLSSVGHQATIVSTDKGYCQLLAPHIQIRDYFQKRWLDLPFIEQEFGVSPQQLTD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG K+AA +LQ+ G+LE++      + +K R++ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGPKSAAQILQQAGSLESLYQQLDAVPEKWRKK-LEQHKEMAL 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +SR++  LRTD+ +   L+ L L
Sbjct: 227 ISRQIATLRTDLTLNGNLQQLRL 249


>gi|24373120|ref|NP_717163.1| exonuclease IX [Shewanella oneidensis MR-1]
 gi|24347316|gb|AAN54607.1|AE015601_1 exodeoxyribonuclease IX [Shewanella oneidensis MR-1]
          Length = 236

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 118/202 (58%), Gaps = 4/202 (1%)

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV++D   +++R ++YPDYK  R  +PE L   L  ++   Q   I +I     EAD
Sbjct: 22  THVAVVWDGDEISWRKQLYPDYKKGRKPMPEPLAAGLIALQEHLQNLQIQSI-YAAAEAD 80

Query: 119 DIIATY-TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           D+IAT  T  A+ +G A+ I+STDK   QL  P    +D   ++ ++I  + +K G+   
Sbjct: 81  DVIATLATKTAKAQGEAL-IVSTDKGFSQLNHPRISQWDHFNQQYLNIAELEQKLGVDRS 139

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L AL GDS + IPGIPGIG K+AA LL+ +  L  +  +   +  K+ ++ + E  
Sbjct: 140 QFLDLMALAGDSGNKIPGIPGIGPKSAAELLRTFRTLATLFSSLPNLGAKQAKK-LAEGR 198

Query: 238 ETARLSRKLVMLRTDVPITIPL 259
           + ARLS KLV L+TD+P+ I L
Sbjct: 199 DMARLSYKLVQLQTDLPLNINL 220


>gi|188534853|ref|YP_001908650.1| Exodeoxyribonuclease IX [Erwinia tasmaniensis Et1/99]
 gi|188029895|emb|CAO97779.1| Exodeoxyribonuclease IX [Erwinia tasmaniensis Et1/99]
          Length = 251

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 118/211 (55%), Gaps = 3/211 (1%)

Query: 59  SHFAVIFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
           +H   +FD    + ++R+ + PDYKA R  +P+ L  ++PL+R A  + G+ +    G E
Sbjct: 42  THAVAVFDDEQRSDSWRHRLLPDYKAGRSPMPDALCEEMPLLRSAFASIGVKSWHATGDE 101

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+ AT        G   TI+STDK   QL++P   + D  ++  +D+  +   +G+ P
Sbjct: 102 ADDLAATIASKVAAAGHQATIVSTDKGYCQLLAPRVQIRDYFQKRWLDMPFISNTFGVEP 161

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++     L G S   IPG+ GIG K+AA LLQ++G+L  I  +  ++ +K R + + E+
Sbjct: 162 AQLTDYWGLAGISSSKIPGVGGIGGKSAAQLLQQFGSLAAIYQDLEQVPEKWRNK-LSEH 220

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDC 267
            + A + +++  L+TD+ +   L+ L LE C
Sbjct: 221 QKMAAICKQVATLKTDLVLKGNLKELRLEQC 251


>gi|313608057|gb|EFR84137.1| 5'-3' exonuclease [Listeria monocytogenes FSL F2-208]
          Length = 221

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 109/193 (56%), Gaps = 6/193 (3%)

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           NE+Y  YKA R   PE ++PQ  L +     FG   + + GFEADD I T T  A     
Sbjct: 5   NELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEADDCIGTITVQASNT-I 63

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
           A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI P + + ++AL GD+
Sbjct: 64  ATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGISPRQFIDVKALMGDT 123

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++ + I E      LS+KL  +
Sbjct: 124 SDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQTK-IQEDLAMLELSQKLARI 182

Query: 250 RTDVPITIPLEHL 262
            T+VP+ I L  L
Sbjct: 183 HTEVPLEIDLPSL 195


>gi|328873005|gb|EGG21372.1| DNA polymerase theta short isoform [Dictyostelium fasciculatum]
          Length = 989

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 6/231 (2%)

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           S   G L++LE    N  + T    +IR +FI       +SADYSQIELRILAH+++   
Sbjct: 748 SKSIGSLSTLELKEDNCRLIT---VRIRDSFIPRKGYLFLSADYSQIELRILAHLSEDKL 804

Query: 767 LYQVFEN-SLDIHRMVAAEIF-GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
           L     N   D  + +  ++  G  IE V+ + R  AK + + I+YG+  + LA +L   
Sbjct: 805 LLDGLNNPDFDFFKTMFVQMNKGTRIEDVTAEERDIAKELCYGILYGMGTWSLANKLDRD 864

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA    ++ ++ +  + +YI+  K    Q GYVET + R+   D     K  I    +
Sbjct: 865 EKEARILKEKLYNTYRDLIKYIDSVKKRYHQVGYVETFYHRKRFLDNNTRDKVEIEK-EK 923

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           R A+N+  QG+AADI ++AMIS+ +  E+ K    M+LQIHDEL+FEV E+
Sbjct: 924 RKAVNSIPQGTAADIIKQAMISIDRIFEEQKTPALMVLQIHDELLFEVRED 974



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 26/223 (11%)

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVIL-QLWLLLRPKLIVEKLLHVYERLDKPM 576
           +E  + +K S  +D+++      H    S V++ QL+           L  ++  ++ P+
Sbjct: 483 REFSQDKKLSTNVDELNHYDRSFHHCYRSFVLMKQLFTRFH---FNRDLYKIFNEMEMPL 539

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN----IYDLSGEKFNLSSPKQLGDI 632
           + ++++ME  GI  D    +    E+ + L  +E      + DL   KF++SS + + +I
Sbjct: 540 LVILAKMEYNGIGFDDATCQNTKYEVLQKLQYIEVKARLMVPDL---KFSMSSKEDMSNI 596

Query: 633 LFTKLKFPSGAKTKTGQ-----WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           L+  L+     K   G+       T A  LE +        K ++EWR+LS     Y   
Sbjct: 597 LYNVLRVVDIPKANRGKIVKRHHSTKAAILEAVPEEKAAFPKMLIEWRKLSHHLLNYVHV 656

Query: 688 L-------PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           L       P++      R++T     +  TGRLA   PNLQ+I
Sbjct: 657 LFKFGYYNPDY---EMMRIYTTIMQTNVPTGRLAMTYPNLQSI 696


>gi|126435099|ref|YP_001070790.1| 5'-3' exonuclease [Mycobacterium sp. JLS]
 gi|126234899|gb|ABN98299.1| 5'-3' exonuclease [Mycobacterium sp. JLS]
          Length = 316

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 139/279 (49%), Gaps = 36/279 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+++A P      DG PVNA+ GF + +  L+   R     S   V  D
Sbjct: 5   LLLLDGASMWFRSYFALPSSITAPDGRPVNAVRGFLDTVAMLIGRER----PSRLVVCRD 60

Query: 67  ---YPAVTFRNEIYPDYKANR---PK--------IPEMLLPQLPLVRLATQAFGIPAIEI 112
               P   +R ++ P YKA+R   P+        +P+ L PQ+ ++     AFGIP    
Sbjct: 61  DDWRP--QWRVDLVPSYKAHRVAEPQAAGTDVEVVPDELTPQVDMIMEMLDAFGIPHAGA 118

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
            G+EADD++ T     E++   V ++S D+D++Q+V         LY      K      
Sbjct: 119 PGYEADDVLGTLAAAEERD--RVIVVSGDRDMLQVVRDDPVEVRVLYLGRGMSKATLFGP 176

Query: 166 EHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V  ++ +P E+       L  + GD  D +PG+PG+G KTAA LL ++G+LE I+  A
Sbjct: 177 AEVADQYAVPKERAGAAYAELALMRGDPSDGLPGVPGVGEKTAATLLAQFGSLEAIVAAA 236

Query: 222 SRIKQKKR---RENILEYAETARLSRKLVMLRTDVPITI 257
           +  K K     R+ +L  A+    +  +V + TD P+T+
Sbjct: 237 NDPKSKMSKAYRKKMLAAADYIEAAEPVVRVATDAPVTM 275


>gi|197286144|ref|YP_002152016.1| exodeoxyribonuclease IX [Proteus mirabilis HI4320]
 gi|227357264|ref|ZP_03841621.1| exodeoxyribonuclease IX [Proteus mirabilis ATCC 29906]
 gi|194683631|emb|CAR44545.1| exodeoxyribonuclease IX [Proteus mirabilis HI4320]
 gi|227162527|gb|EEI47516.1| exodeoxyribonuclease IX [Proteus mirabilis ATCC 29906]
          Length = 249

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 7/221 (3%)

Query: 47  KLLQNSRKESIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA 104
           +LL ++R     +H   +FD      ++R+++ P+YKA R  +P  L  QLP ++     
Sbjct: 34  QLLNHTR----PTHAVAVFDEDDRENSWRHQLLPEYKAGRSPMPADLHQQLPEIKAMLLN 89

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID 164
            GI +    G EADD+ AT      + G  VTIISTDK   QL+SP   + D  ++  +D
Sbjct: 90  LGIKSWHSGGDEADDVAATLATKVAQAGHNVTIISTDKGYCQLLSPAIRIRDYFQKRWLD 149

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
           +E + +++G+ P ++     LTG S   + G+PGIG K+A  LLQ Y NLE++  +   +
Sbjct: 150 LEFINQEFGVKPTQLTDYWGLTGVSSSKVSGVPGIGPKSATELLQLYPNLESLYQHIDEV 209

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
             KK +  + +  E A +SR++  LRTD+ +   L+ L L+
Sbjct: 210 P-KKWQTKLSDNKEVAFISRQITTLRTDIQLNGNLQQLRLK 249


>gi|167624979|ref|YP_001675273.1| exonuclease IX [Shewanella halifaxensis HAW-EB4]
 gi|189030096|sp|B0TPG7|XNI_SHEHH RecName: Full=Protein Xni
 gi|167355001|gb|ABZ77614.1| 5'-3' exonuclease [Shewanella halifaxensis HAW-EB4]
          Length = 252

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 136/262 (51%), Gaps = 13/262 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R   A P  S    GL    + G C  L K  Q        SH A++
Sbjct: 2   NKFLIIDGMNLVRRIHAAQPNES-DITGLK-ERVNGACRKLLKFHQ-------PSHAAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D  A+++R  ++ DYK  R  +PE L   L  ++       + +I     EADD+IAT 
Sbjct: 53  WDGDAISWRKALFEDYKKGRKPMPEALANGLVELKAYLAEHQLNSINADS-EADDVIATL 111

Query: 125 -TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            T +    G A+ I+STDK   QL  P    +D   +  + IE + KK G+   + +   
Sbjct: 112 ATKLTSINGEAI-IVSTDKGFCQLSHPNIKRWDHFNQGYLTIEEMEKKLGVESTQFIDYL 170

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS + IPG+PGIG K+A  LL+ + +L NI  +  ++  K+ ++ + E  + ARLS
Sbjct: 171 ALAGDSGNKIPGVPGIGPKSAVELLKIFRSLANIYNSIDKVGSKQAKK-LEEGKQMARLS 229

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
            KLV L+TD+P+ + L+   +E
Sbjct: 230 YKLVQLQTDLPLNVNLKQFRIE 251


>gi|183600877|ref|ZP_02962370.1| hypothetical protein PROSTU_04477 [Providencia stuartii ATCC 25827]
 gi|188019660|gb|EDU57700.1| hypothetical protein PROSTU_04477 [Providencia stuartii ATCC 25827]
          Length = 252

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 59  SHFAVIFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
           +H   +FD      ++R+E  PDYKA R  +PE L  +LP +    +A G+   +  G E
Sbjct: 42  THIVAVFDEEGRHNSWRHEKLPDYKAGRQPMPENLYAELPSLVKQFEAKGVHCWQSSGDE 101

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+ AT        G  VTI+STDK   QL+SP+  + D  ++  +D+  + K++G+ P
Sbjct: 102 ADDLAATLAKKIADAGQTVTIVSTDKGYCQLLSPSIRIRDYFQKRWLDVPFIEKEFGVKP 161

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++     L G S   +PG+ GIG K+A  LLQ+Y ++EN+  +   + +K R++ I ++
Sbjct: 162 CQLPDYWGLAGISSSKVPGVAGIGAKSATQLLQQYHSIENLFAHLDSVDEKWRKKLIGQF 221

Query: 237 AETARLSRKLVMLRTDVPITIPLEHL 262
            + A++ R +  LRTD+ +   L  L
Sbjct: 222 -DIAKVCRDIATLRTDIQLQGNLNQL 246


>gi|300936283|ref|ZP_07151216.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 21-1]
 gi|300458608|gb|EFK22101.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 21-1]
          Length = 251

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRSAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFLSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|148906869|gb|ABR16580.1| unknown [Picea sitchensis]
          Length = 400

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 139/286 (48%), Gaps = 33/286 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDG--LPVNAIAGFCNMLWKLLQN--SRKESIASH 60
             L L+DG++ +YRA+Y   L++  H G     +    +   ++K L       E   SH
Sbjct: 112 GRLMLIDGTAAMYRAYYQ--LMASLHYGNLEHADGNGDWVLSIFKALSTMLDMLELCPSH 169

Query: 61  FAVIFDYPAV-------------------TFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
            AV+FD+                      TFR+ +YP YK+NR   P+ ++  L  ++ A
Sbjct: 170 IAVVFDHRGFEFGYNPPNLCQEFCGSTGPTFRHTLYPAYKSNRMPTPDTIVQALQYLKAA 229

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE- 160
            QA    ++++ G EADD+I T        G  V ++S DKD  Q++ P+  L       
Sbjct: 230 LQAM---SVKVPGVEADDVIGTLAVNGVAAGLKVRVVSPDKDFFQILCPSLRLLRISSRG 286

Query: 161 ---EKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
                  +E   +K+G + P ++V + AL GD+ D IPG+ GIG   A  L+ ++G+LEN
Sbjct: 287 SRIASFGVEQFAEKYGDLKPSQIVDVMALAGDNADFIPGVHGIGDMNALKLIIKFGSLEN 346

Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
           +L N  R+     R+ +L     A LS++L  LR ++P  +   H+
Sbjct: 347 LLANLDRVPDGAIRKALLFDDGQALLSKELATLRCNLPYCMVPFHM 392


>gi|118463818|ref|YP_881611.1| 5'-3' exonuclease [Mycobacterium avium 104]
 gi|118165105|gb|ABK66002.1| 5'-3' exonuclease [Mycobacterium avium 104]
          Length = 313

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 85/276 (30%), Positives = 134/276 (48%), Gaps = 33/276 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+DG+S  +R+++  P      DG PVNA+ GF + L  ++   R     S   V  D  
Sbjct: 2   LLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFLDSLAVVITQQR----PSRLVVCLDLD 57

Query: 69  -AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               FR ++ P YKA+R             ++P+ L PQ+ ++    +A+GIP    +GF
Sbjct: 58  WRPQFRVDLVPSYKAHRVAEAEPAGEPDVEEVPDDLTPQIDMIAELLEAYGIPTAGAEGF 117

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHV 168
           EADD++ T    A +    V ++S D+DL+Q+VS    P   LY      K        V
Sbjct: 118 EADDVLGTLA--ARERDDPVVVVSGDRDLLQVVSDDPVPVRVLYLGRGLSKATLFGPVEV 175

Query: 169 IKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            + +G+P ++       L  L GD  D +PG+PG+G KTAA LL ++G+L  +L  A   
Sbjct: 176 AEHYGVPVDRAGPAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLHRVLAAAHDP 235

Query: 225 KQKKR---RENILEYAETARLSRKLVMLRTDVPITI 257
           K K     R  +L   +    +  +V + TD P+ +
Sbjct: 236 KSKMAKGLRAKLLGALDYIEAAGPVVRVATDAPVKL 271


>gi|310766616|gb|ADP11566.1| Exodeoxyribonuclease IX [Erwinia sp. Ejp617]
          Length = 249

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 128/224 (57%), Gaps = 7/224 (3%)

Query: 43  NMLWKLLQNSRKESIASHFAVIFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
           N + +LL ++R     +H   +FD    + ++R+++ PDYKA R  +P+ L  ++PL+R 
Sbjct: 30  NAVQQLLLHTR----PTHAVAVFDDDRRSSSWRHQLLPDYKAGRSPMPDALRDEMPLLRG 85

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           A  + G+ +   +G EADD+ AT        G   TI+STDK   QL++PT  + D  ++
Sbjct: 86  AFASIGVKSWHSKGDEADDLAATLASKVAAVGHQATIVSTDKGYCQLLAPTIQIRDYFQK 145

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
             +D+  +   +G+ P ++     L G S   IPG+ GIG K+AA LL+++G++  I  N
Sbjct: 146 RWLDMPFITDSFGVEPTQLTDYWGLAGISSSKIPGVAGIGGKSAAQLLRQFGSMAAIYQN 205

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             ++ +K R++ + E+ + A + +++  L+TD+ +   L+ L L
Sbjct: 206 LEQVPEKWRKK-LAEHQQMATICKQVATLKTDLLLEGNLKELRL 248


>gi|152999889|ref|YP_001365570.1| exonuclease IX [Shewanella baltica OS185]
 gi|166918968|sp|A6WL18|XNI_SHEB8 RecName: Full=Protein Xni
 gi|151364507|gb|ABS07507.1| 5'-3' exonuclease [Shewanella baltica OS185]
          Length = 262

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 11/256 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +          ++  C    KLL+  R     SH A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDETDMQS--LTERVSSACT---KLLRVHR----PSHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++    A  I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL       +D   ++ +DI  + +K G+   + + L A
Sbjct: 112 AIKTAKAQGEAIIVSTDKGFSQLNHRHISQWDHFNQQYLDIAALEQKLGVERSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ + +L  +  + S +  K+ ++ + E  E ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNLGAKQAKK-LAEGKEMARLSY 230

Query: 245 KLVMLRTDVPITIPLE 260
           KL  L+TD+P+ I L+
Sbjct: 231 KLAQLQTDLPLNINLK 246


>gi|229821989|ref|YP_002883515.1| 5'-3' exonuclease [Beutenbergia cavernae DSM 12333]
 gi|229567902|gb|ACQ81753.1| 5'-3' exonuclease [Beutenbergia cavernae DSM 12333]
          Length = 319

 Score =  121 bits (304), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 136/285 (47%), Gaps = 34/285 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L L+D +S  +RAF+  P   R  DG P+ A+ GF   +  LL  +R     S 
Sbjct: 1   MTSRGSLLLLDSASMYFRAFFGVPDSVRSPDGQPIGAVRGFLEAI-TLLLTTRS---PSR 56

Query: 61  FAVIFD---YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFG 106
               +D    PA  FR    P YKA+R            ++P+ L  Q+P++  A  A G
Sbjct: 57  LVACWDDDWRPA--FRVAAIPSYKAHRVARDVPGTTGEEEVPDALSVQVPVIVEALAAIG 114

Query: 107 IPAIEIQGFEADDIIATYTYI----AEKEGFAVTIISTDKDLMQLV---SPTTCLYDTVK 159
           IP I   G+EADD+I T+  +     + E  AV I++ D+DL QLV   +P   LY    
Sbjct: 115 IPRIGRPGYEADDVIGTFATLEAGRPDGERSAVEIVTGDRDLFQLVDDDAPIRVLYTARG 174

Query: 160 EEKIDIEHVIK---KWGIPPEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
              +D+  V +   ++G+        + AL GD  D +PG+PGIG KTA  LL  YG+L 
Sbjct: 175 MRDLDVVDVARLRERYGVASGAAYADMAALRGDPSDGLPGVPGIGEKTAVALLNRYGDLA 234

Query: 216 NILI---NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITI 257
            +L    +        +R+ + E A    ++  +V +  DVP+ +
Sbjct: 235 GVLRARDDGDPGLSATQRKRLTEAAGYLDVAPTVVQVARDVPVGV 279


>gi|156932718|ref|YP_001436634.1| hypothetical protein ESA_00506 [Cronobacter sakazakii ATCC BAA-894]
 gi|166918964|sp|A7MR03|XNI_ENTS8 RecName: Full=Protein Xni
 gi|156530972|gb|ABU75798.1| hypothetical protein ESA_00506 [Cronobacter sakazakii ATCC BAA-894]
          Length = 251

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   TP             +    + L +L+ NS+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGTP------------CVDTCLHALEQLIGNSQ----PTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A    +R+++ PDYKA RP +P+ L  ++P +R A    G+P   ++G EADD+ 
Sbjct: 48  VFDDEARAQGWRHQLLPDYKAGRPPMPDDLHQEMPALRDAFTRRGVPCWHVEGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL+ P   + D  ++  +D   +  ++G+ P ++  
Sbjct: 108 ATLAVKVAAAGHEATIVSTDKGYCQLLRPEIRIRDYFQKRWLDAPFIESEFGVSPGQLAD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+PGIG K+A  L+ ++G LE +      +  K R++ +  + E+A 
Sbjct: 168 FWGLAGISSSKIPGVPGIGPKSATQLINDFGTLEALYERLDDVPDKWRKK-LEAHRESAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           + R +  L+TD+ +   L+ L L
Sbjct: 227 VCRAVATLKTDLQLDGNLQQLRL 249


>gi|256376383|ref|YP_003100043.1| 5'-3' exonuclease [Actinosynnema mirum DSM 43827]
 gi|255920686|gb|ACU36197.1| 5'-3' exonuclease [Actinosynnema mirum DSM 43827]
          Length = 349

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 137/277 (49%), Gaps = 33/277 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+D +S  +R+FYA P      DG PVNA+ GF + + K++ N R    AS     
Sbjct: 37  SPLVLMDAASLYFRSFYALPESMTAPDGTPVNAVRGFVDTIAKIV-NDRN---ASRLVAC 92

Query: 65  FDY---PAVTFRNEIYPDYKANR-------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
            D    P   FR    P YKA+R        ++P+ L PQ+P++     A GI   E  G
Sbjct: 93  LDADWRP--EFRVAALPSYKAHRVAESGDAEEVPDTLTPQVPIILDVLDAVGIATAEAPG 150

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV----SPTTCLY---DTVKEEKIDIEH 167
           +EADD+I T    A +    V +++ D+DL Q+V    +P   LY      K E +    
Sbjct: 151 YEADDVIGTLA--ARETTNPVEVVTGDRDLFQVVRTTPTPAGVLYLGRGWAKAELVGPAE 208

Query: 168 VIKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INA 221
           +  K+ +P E        +  L GD  D +PG+ GIG KTAA L+ E+G+LE +L  ++ 
Sbjct: 209 LAAKYALPEEDAGRAYAGMAVLRGDPSDGLPGVAGIGEKTAAKLITEFGSLEALLAAVHD 268

Query: 222 SRIKQ--KKRRENILEYAETARLSRKLVMLRTDVPIT 256
            R ++   K R  ++   +   ++  +V +  D P+T
Sbjct: 269 GRDRKLTTKARNALIAAEDYLAVAPTVVNVALDAPVT 305


>gi|254230379|ref|ZP_04923762.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395017|ref|YP_003286871.1| exodeoxyribonuclease IX [Vibrio sp. Ex25]
 gi|151937085|gb|EDN55960.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262338611|gb|ACY52406.1| exodeoxyribonuclease IX [Vibrio sp. Ex25]
          Length = 260

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 131/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEANPTHIIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ N+E     AS     K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFENIEAAY--ASEDLAPKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+ D+ +   L+ +
Sbjct: 233 KRVAALKCDIELGFNLQDI 251


>gi|66812036|ref|XP_640197.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
 gi|60468189|gb|EAL66199.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
          Length = 1459

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 33/258 (12%)

Query: 734  RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG---VNI 790
            R +FIS     L+  DY+Q+ELRI+AH ++   L + FE+  D+  M+A  +     +++
Sbjct: 1184 RNSFISREGFSLVVLDYNQVELRIIAHFSRDKHLIEYFESGSDVINMMAVRLSDRDDLDV 1243

Query: 791  EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
              V  + R   K I + I+YGI  F L   L IP  +A+D+IK ++ +F G+  +I+ TK
Sbjct: 1244 NNVDKETRDRVKRIVYGILYGIQAFSLGKLLNIPIYKASDHIKNFYFKFDGVSNFIQITK 1303

Query: 851  NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER---AAINAPIQGSAADITRRAMISV 907
            +   ++  V T+ G+R            IR ++ +    A+N+ IQGS+ADI + AMI++
Sbjct: 1304 SNAEKSHVVPTL-GKR------------IRKLDSKFKTKAVNSIIQGSSADIIKLAMITI 1350

Query: 908  HKSLEDHKLAT---------KMLLQIHDELVFEVPEEEITTAS----QIIVHSMEKACLP 954
               L    L           + LLQ+HDELVFEVP+E +   S     +I + ME     
Sbjct: 1351 MNELFLPLLNLNSNNNNKIPRFLLQVHDELVFEVPDEYLGDNSIRMDLLIKYQMENVS-N 1409

Query: 955  KINLRVPLKVNIKVSNNW 972
              N+ VPL  ++ +   +
Sbjct: 1410 YFNMCVPLSTSLSIGKKY 1427


>gi|120599611|ref|YP_964185.1| exonuclease IX [Shewanella sp. W3-18-1]
 gi|156630387|sp|A1RLT6|XNI_SHESW RecName: Full=Protein Xni
 gi|120559704|gb|ABM25631.1| 5'-3' exonuclease [Shewanella sp. W3-18-1]
          Length = 262

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 13/257 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA-IAGFCNMLWKLLQNSRKESIASHFAV 63
           N   ++DG + + R + A P    ++D   +   +   C  L ++          SH A+
Sbjct: 2   NKFLIIDGLNLVRRIYAAIP---NENDMESLKERVTSACTKLLRVHH-------PSHIAI 51

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           ++D   +++R ++YPDYK  R  +PE L   L  ++       I +I     EADD+IAT
Sbjct: 52  VWDGDEISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASI-YAAAEADDVIAT 110

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 K      I+STDK   QL  P    +D   ++ +DI  + +K G+   + + L 
Sbjct: 111 LAVKTAKAQGEAIIVSTDKGFSQLNHPRITQWDHFNQQYLDIAALEQKLGVDRSQFLDLM 170

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS + IPGI GIG K+AA LL+ +  L  +  +   +  K+ ++ + E  E ARLS
Sbjct: 171 ALAGDSGNKIPGIAGIGPKSAAELLKTFRTLSTLFSSLPNLGAKQAKK-LAEGKEMARLS 229

Query: 244 RKLVMLRTDVPITIPLE 260
            KL  L+TD+P+ I L+
Sbjct: 230 YKLAQLQTDLPLNINLK 246


>gi|146312892|ref|YP_001177966.1| exonuclease IX [Enterobacter sp. 638]
 gi|145319768|gb|ABP61915.1| 5'-3' exonuclease [Enterobacter sp. 638]
          Length = 264

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 136/263 (51%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   TP    K   L         N L +L+++S+     +H   
Sbjct: 17  HLLIVDALNLIRRIHAVQGTPC---KDTCL---------NALEQLIRHSQ----PTHVVA 60

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A    +R+++ PDYKA R  +P+ L  ++P +R A +  G+P    QG EADD+ 
Sbjct: 61  VFDDEARNTGWRHQLLPDYKAGRAPMPDDLHAEMPTIRAAFEHRGVPCWGAQGNEADDLA 120

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL+SPT  + D  ++  +D   +  ++G+ P+++  
Sbjct: 121 ATLAIKVAGAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAPFIASEFGVSPQQLPD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+AA LL ++ +LE I  +   + +K R++ +  + E A 
Sbjct: 181 YWGLAGISSSKVPGVAGIGPKSAAQLLTDFQDLEGIYAHIDDVPEKWRKK-LEAHKEMAF 239

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           + R +  L+ D+ +   L+ L L
Sbjct: 240 ICRDVAKLQIDLQLDGNLQQLRL 262


>gi|282864307|ref|ZP_06273363.1| 5'-3' exonuclease [Streptomyces sp. ACTE]
 gi|282560794|gb|EFB66340.1| 5'-3' exonuclease [Streptomyces sp. ACTE]
          Length = 311

 Score =  121 bits (303), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 87/272 (31%), Positives = 139/272 (51%), Gaps = 31/272 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   R  DG PVNA  G  + + +L+Q+ R + + +      D
Sbjct: 9   LMLLDTASLYFRAYFGVPDSVRAPDGTPVNAARGLLDFIARLVQDHRPDELVACMDA--D 66

Query: 67  YPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    +R ++ P YKA+R             ++P+ L PQ+P++     A GI  + + G
Sbjct: 67  WRP-QWRVDLIPTYKAHRVATETAAGLPDEEEVPDTLSPQVPVIEDVLDALGIARVGVAG 125

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLYDTVKE----EKIDIEH 167
           +EADD+I T   +A +    V I++ D+DL QLV        LY  VK     +  D   
Sbjct: 126 YEADDVIGT---LAGRATGPVDIVTGDRDLYQLVDDARGIRVLY-PVKGVGTLQMTDEAW 181

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----ASR 223
           + +K+G+     V L  L GD  D +PG+PGIG KTAA LL  +G+L  I+      A+R
Sbjct: 182 LREKYGVDGAGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDAFGDLAGIMAAVDDPAAR 241

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           +   +RR  + E      ++ K+V +  DVP+
Sbjct: 242 LTPSQRRR-LDEARAYVAVAPKVVRVADDVPL 272


>gi|108759097|ref|YP_628609.1| 5'-3' exonuclease family protein [Myxococcus xanthus DK 1622]
 gi|108462977|gb|ABF88162.1| 5'-3' exonuclease family protein [Myxococcus xanthus DK 1622]
          Length = 294

 Score =  120 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 94/264 (35%), Positives = 136/264 (51%), Gaps = 11/264 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDG+  +YRA ++        DG  V A  G  + L  LL ++  +   +H AV FD
Sbjct: 3   LHLVDGTYELYRAHFSPRPGHAAPDGQDVKATVGLMSSLLALLHDA--DEAVTHVAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  +FRN ++  YK++   +P  L  Q  L   A +A G+ A  ++  EADD +AT   
Sbjct: 61  NPIRSFRNALFDGYKSDE-GVPPELHAQFDLAEEAVRALGVTAWSMKEQEADDALATAAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQAL 185
                   V +++ DKDL Q V  +  +    ++EK+ D + V  K G+PP  +  L AL
Sbjct: 120 RWADTVEQVRLLTPDKDLGQCVRGSRVVQVDRRQEKVLDEDAVRAKLGVPPASVPDLLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL-----EYAETA 240
            GD+ D IPG+PG G K A+ LL  +G+LE+I   AS  K + R    L     E+ + A
Sbjct: 180 MGDAADGIPGLPGFGEKGASALLSAHGHLEDIPAEASEWKVRPRGAEKLAATLREHRDAA 239

Query: 241 RLSRKLVMLRTDVPI--TIPLEHL 262
            L R+L  L TD P+  T  LE L
Sbjct: 240 LLYRRLATLVTDAPLPGTSSLEDL 263


>gi|295839822|ref|ZP_06826755.1| 5'-3' exonuclease [Streptomyces sp. SPB74]
 gi|295827663|gb|EDY44700.2| 5'-3' exonuclease [Streptomyces sp. SPB74]
          Length = 312

 Score =  120 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 27/245 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   R  DG PVNA+ G  + +  L+Q+ R +S+ +      D
Sbjct: 10  LMLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIAHLVQDHRPDSLVACMDA--D 67

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +    +R  + P YKA+R            ++P+ L PQ+P++     A GI  + + G+
Sbjct: 68  WRP-EWRVALIPGYKAHRVAGETEAGPDEEEVPDTLSPQVPVIEAVLDALGIARLGVPGY 126

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKIDIEHVIK 170
           EADD+I T T  A      V I++ D+DL QLV        LY    V   +   E V++
Sbjct: 127 EADDVIGTLTTRARG---PVDIVTGDRDLFQLVDDARGVRVLYPLKGVGSLQATDEAVLR 183

Query: 171 -KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----ASRIK 225
            K+G+       L  L GD  D +PG+PGIG KTAA LL  YG+L+ I       AS+I 
Sbjct: 184 EKYGVDGPGYADLATLRGDPSDGLPGVPGIGEKTAAKLLAAYGDLDGIRAAAADPASKIT 243

Query: 226 QKKRR 230
             +RR
Sbjct: 244 PAQRR 248


>gi|218701515|ref|YP_002409144.1| exonuclease IX [Escherichia coli IAI39]
 gi|218371501|emb|CAR19339.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli IAI39]
          Length = 281

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 133/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 34  HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQP----THAVA 77

Query: 64  IFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP + E L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMQEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|319425692|gb|ADV53766.1| Exonuclease IX [Shewanella putrefaciens 200]
          Length = 262

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 13/257 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA-IAGFCNMLWKLLQNSRKESIASHFAV 63
           N   ++DG + + R + A P    ++D   +   +   C  L ++          SH A+
Sbjct: 2   NKFLIIDGLNLVRRIYAAIP---NENDMESLKERVTSACTKLLRVHH-------PSHIAI 51

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           ++D   +++R ++YPDYK  R  +PE L   L  ++       I +I     EADD+IAT
Sbjct: 52  VWDGDDISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASI-YAAAEADDVIAT 110

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 K      I+STDK   QL  P    +D   ++ +DI  + +K G+   + + L 
Sbjct: 111 LAVKTAKAQGEAIIVSTDKGFSQLNHPRITQWDHFNQQYLDIAALEQKLGVDRSQFLDLM 170

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS + IPGI GIG K+AA LL+ +  L  +  +   +  K+ ++ + E  E ARLS
Sbjct: 171 ALAGDSGNKIPGIAGIGPKSAAELLKTFRTLSTLFSSLPNLGAKQAKK-LAEGKEMARLS 229

Query: 244 RKLVMLRTDVPITIPLE 260
            KL  L+TD+P+ I L+
Sbjct: 230 YKLAQLQTDLPLNINLK 246


>gi|182439682|ref|YP_001827401.1| putative 5'-3' exonuclease [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178468198|dbj|BAG22718.1| putative 5'-3' exonuclease [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 307

 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 85/270 (31%), Positives = 139/270 (51%), Gaps = 27/270 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R + + + +    D
Sbjct: 5   LMLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIGRLVQDHRPDDLVACWDN--D 62

Query: 67  YPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    +R ++ P YKA+R             ++P+ L PQ+P++     A GI  + +  
Sbjct: 63  WRP-QWRVDLIPTYKAHRVAEETPAGQTDEEEVPDTLSPQVPIIEDVLAALGIARVGVTP 121

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLY--DTVKEEKIDIEHVI 169
           +EADD+I T   +A +    V I++ D+DL QLV        LY    V   ++  E  +
Sbjct: 122 YEADDVIGT---LAGRATGPVDIVTGDRDLYQLVDDARQVRVLYPLKGVGTLQVTDEAWL 178

Query: 170 K-KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK- 227
           + K+G+     V L  L GD  D +PG+PGIG KTAA LL  YG+L+ I+      K K 
Sbjct: 179 RGKYGVDGAGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDAYGDLDGIMAAVDDPKAKL 238

Query: 228 --KRRENILEYAETARLSRKLVMLRTDVPI 255
              +R+ + E      ++ K+V +  DVP+
Sbjct: 239 TPSQRKRLDEARAYVAVAPKVVRVAGDVPL 268


>gi|327251538|gb|EGE63224.1| exonuclease xni [Escherichia coli STEC_7v]
          Length = 251

 Score =  120 bits (302), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 134/264 (50%), Gaps = 23/264 (8%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 TTLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YAETA 240
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++  LE + E A
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK--LEMHKEMA 225

Query: 241 RLSRKLVMLRTDVPITIPLEHLIL 264
            L R +  L+TD+ I   L+ L L
Sbjct: 226 FLCRDIARLQTDLHIDGNLQQLRL 249


>gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5]
 gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5]
          Length = 608

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 235/512 (45%), Gaps = 65/512 (12%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++   
Sbjct: 95  HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPV 154

Query: 517 RKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             E +K+      +K     DKI       D   + +A    + IL   LL +   +V +
Sbjct: 155 TAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYA--GMDTILVSRLLGKVAPLVPE 212

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI---SKNLLSLEENIYDLSGEKF 621
             H     +  + +V+S +E TG  +D D  +++SA++   S++  ++    Y +     
Sbjct: 213 SSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVARYAYGVD---- 268

Query: 622 NLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +++S ++L D L  T +K     +T TG+ +  A+ LE +    N + K  +E ++    
Sbjct: 269 SVNSTEKLADGLERTGVKIK--GRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSW 326

Query: 681 KSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           + T+   + N I +R    RVH   +     T R+++  P+ QN+P    +   +RR F+
Sbjct: 327 EKTW---VRNFIERRDANDRVHPGINPLQARTARMSTTSPSAQNLPANDWM---VRRCFL 380

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P + ++S DY   ELR+LA +A    + + FE   D+H+ V A+  G++        R
Sbjct: 381 ADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQ-VTADAAGMD--------R 431

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           +  K  NF  +YG    +LAT   I   EA   +  +   +PG+ +  +  +      GY
Sbjct: 432 KVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTDLSKSLQREAANLGY 491

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V T  GRR+  D    P          AA+N  +Q ++ D+T  A++ +H    D  L  
Sbjct: 492 VVTPTGRRLPVD----PDRGY------AALNYMVQSTSRDVTASAVLRLH----DAGLTP 537

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            + L IHDE++  VPE E    ++ I   ME+
Sbjct: 538 MIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQ 569


>gi|146292392|ref|YP_001182816.1| exonuclease IX [Shewanella putrefaciens CN-32]
 gi|166918969|sp|A4Y4Y4|XNI_SHEPC RecName: Full=Protein Xni
 gi|145564082|gb|ABP75017.1| 5'-3' exonuclease [Shewanella putrefaciens CN-32]
          Length = 262

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 129/260 (49%), Gaps = 19/260 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATP----LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           N   ++DG + + R + A P    + S K        +   C  L ++          SH
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDENDMESLKER------VTSACTKLLRVHH-------PSH 48

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+++D   +++R ++YPDYK  R  +PE L   L  ++       I +I     EADD+
Sbjct: 49  IAIVWDGDEISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASI-YAAAEADDV 107

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT      K      I+STDK   QL  P    +D   ++ +DI  + +K G+   + +
Sbjct: 108 IATLAVKTAKAQGEAIIVSTDKGFSQLNHPRITQWDHFNQQYLDIAALEQKLGVDRSQFL 167

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GDS + IPGI GIG K+AA LL+ +  L  +  +   +  K+ ++ + E  E A
Sbjct: 168 DLMALAGDSGNKIPGIAGIGPKSAAELLKTFRTLSTLFSSLPNLGAKQAKK-LAEGKEMA 226

Query: 241 RLSRKLVMLRTDVPITIPLE 260
           RLS KL  L+TD+P+ I L+
Sbjct: 227 RLSYKLAQLQTDLPLNINLK 246


>gi|242240407|ref|YP_002988588.1| 5'-3' exonuclease [Dickeya dadantii Ech703]
 gi|242132464|gb|ACS86766.1| 5'-3' exonuclease [Dickeya dadantii Ech703]
          Length = 253

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 135/263 (51%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             +A   + L +L+ +SR     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CVAACQHALKQLILHSR----PTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    T  +R+E+ PDYKA RP +PE L  +LP ++ A    G+ +    G EADD+ 
Sbjct: 48  VFDDEQRTQSWRHELLPDYKAGRPPMPENLRQELPQIKDAFLGLGVDSWRSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT       +G   TI+STDK   QL++PT  + D  ++  +D+  + +++G+ P  +  
Sbjct: 108 ATLASKVAAQGHQATIVSTDKGYCQLLAPTIQIRDYFQKRWLDVPFIRQEFGVEPGLLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTA  LL + G+L+ +     ++ +K RR+ ++E  E A 
Sbjct: 168 YWGLAGISSSKIPGVSGIGPKTATSLLHQAGSLDALYQQLEQLPEKWRRK-LVEQQEMAY 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
             R++  L+ D+ +   L+ L L
Sbjct: 227 RCRQVATLKIDLELNGNLQQLRL 249


>gi|123443498|ref|YP_001007471.1| exonuclease IX [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|156630388|sp|A1JP96|XNI_YERE8 RecName: Full=Protein Xni
 gi|122090459|emb|CAL13327.1| exodeoxyribonuclease IX [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 251

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 135/263 (51%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGF--CNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                ++A+ G    N     LQ     S  +H   
Sbjct: 4   HLLIVDALNLIRR----------------IHAVQGSPSVNACQHALQQLISHSQPTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  + + L  ++PL+R A  + G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQSLPDYKAGRSPMSDNLQQEMPLIREAFNSLGVNCWSSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLAVKIGGAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAALLLQ+  +LE +      + +K R++ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTAALLLQQASSLEQLYQELDSVPEKWRKK-LQQHQEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           + +++  L+TD+P++  L+ L L
Sbjct: 227 ICKQIATLKTDLPLSGNLQQLRL 249


>gi|149907571|ref|ZP_01896318.1| exodeoxyribonuclease IX [Moritella sp. PE36]
 gi|149809241|gb|EDM69170.1| exodeoxyribonuclease IX [Moritella sp. PE36]
          Length = 259

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 135/259 (52%), Gaps = 6/259 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +NHL ++D  + I R       L++ +D  PV  I+     +   ++     +  +H   
Sbjct: 3   QNHLLIIDALNLIRRVHAVQ--LNQSND--PVAQISATRETIKHAVRKLLSITAPTHVVA 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD     +R++IYP+YKANR  +PE L   L L++       + ++  +  EADD+IAT
Sbjct: 59  VFDAEQTGWRHDIYPEYKANRKPMPESLQQALTLIQDDLWELNVDSLLTEQDEADDLIAT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                  +   VTIISTDK   QL++P   + D   +  +D   +  K+G+ P ++V   
Sbjct: 119 LAIKMSAQQQQVTIISTDKGYCQLLTPYIQIRDYFNKRWLDQAFINDKFGVQPLQLVDYW 178

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL G S  ++ G+ GIG KTA  LL ++ NL+ I   AS   + K RE +  + E A ++
Sbjct: 179 ALVGISGSHLAGVAGIGPKTATQLLTQHVNLDAIY--ASEELKPKLREKLDTHKEMAYIT 236

Query: 244 RKLVMLRTDVPITIPLEHL 262
           ++L  L+ D+P+   L+ L
Sbjct: 237 QQLAQLKIDIPLGFNLKDL 255


>gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem]
 gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem]
          Length = 608

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 236/512 (46%), Gaps = 65/512 (12%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++   
Sbjct: 95  HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPV 154

Query: 517 RKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             E +K+      +K     DKI       D   + +A    + IL   LL +   +V +
Sbjct: 155 TAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYA--GMDTILVSRLLGKVAPLVPE 212

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI---SKNLLSLEENIYDLSGEKF 621
             H     +  + +V+S +E TG  +D D  +++SA++   +++  ++    Y +     
Sbjct: 213 SSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYTAVARYAYGVD---- 268

Query: 622 NLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +++S ++L D L  T +K     +T TG+ +  A+ LE +    N + K  +E ++    
Sbjct: 269 SVNSTEKLADGLERTGVKIK--GRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSW 326

Query: 681 KSTYADSLPNHINKRT--QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           + T+   + N I +R    RVH   +     TGR+++  P+ QN+P    +   +RR F+
Sbjct: 327 EKTW---VRNFIERRDADDRVHPGINPLQARTGRMSTSNPSAQNLPSGDWM---VRRCFL 380

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P + ++S DY   ELR+LA +A    + + FE   D+H+ V A+  G++        R
Sbjct: 381 ADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQ-VTADAAGMD--------R 431

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           +  K  NF  +YG    +LAT   I   EA   +  +   +PG+ +  +  +      GY
Sbjct: 432 KVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTDLSKSLQREAANLGY 491

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V T  GRR+  D    P          AA+N  +Q ++ D+T  A++ +H    D  L  
Sbjct: 492 VVTPTGRRLPVD----PDRGY------AALNYMVQSTSRDVTASAVLRLH----DAGLTP 537

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            + L IHDE++  VPE E    ++ I   ME+
Sbjct: 538 MIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQ 569


>gi|320157185|ref|YP_004189564.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319932497|gb|ADV87361.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 259

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 133/268 (49%), Gaps = 14/268 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P  +        N I   C  L +++     ES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQPDPTDI-----ANTIQNTCRTLQRII----SESHPTHIVAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P+YK  R  +PE LL  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHLGSDRGWRAEILPEYKQGRKPMPEPLLNGLEKIQEAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P+++    
Sbjct: 115 LACKVAQHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDQPFIEQEFGVKPQQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   + GIPGIG K A  +L ++ ++E   ++      KK R    ++ E AR  
Sbjct: 175 GLTGISSSQVTGIPGIGPKAAKEILSQFDDIEQAFLSPDL--PKKYRTKFDQHIELARRC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+TD+ +   L+ L     N PR
Sbjct: 233 KRVSALKTDIELGFNLQDLRFT-ANEPR 259


>gi|160874514|ref|YP_001553830.1| exonuclease IX [Shewanella baltica OS195]
 gi|189030095|sp|A9KTM9|XNI_SHEB9 RecName: Full=Protein Xni
 gi|160860036|gb|ABX48570.1| 5'-3' exonuclease [Shewanella baltica OS195]
 gi|315266753|gb|ADT93606.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Shewanella baltica OS678]
          Length = 262

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 132/256 (51%), Gaps = 11/256 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +          ++  C    KLL+  R     +H A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDETDMQS--LTERVSSACT---KLLRVHR----PTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++    A  I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL       +D   ++ +DI  + +K G+   + + L A
Sbjct: 112 AIKTAKAQGEAIIVSTDKGFSQLNHRQISQWDHFNQQYLDIAALEQKLGVERSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ + +L  +  + S +  K+ ++ + E  E ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNLGAKQAKK-LAEGKEMARLSY 230

Query: 245 KLVMLRTDVPITIPLE 260
           KL  L+TD+P+ I L+
Sbjct: 231 KLAQLQTDLPLNINLK 246


>gi|281413897|ref|ZP_06245639.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 134

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/134 (42%), Positives = 86/134 (64%), Gaps = 4/134 (2%)

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ +Y+       RQ+GY  TI GRR +  +++S    +R++ ERAA+NAPIQGSAADI 
Sbjct: 2   GVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSAADII 61

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +RAM+ V   LE+H LA+++LLQ+HDEL+ EVP  E+  A+ ++   M +A      L V
Sbjct: 62  KRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRAA----ELSV 117

Query: 961 PLKVNIKVSNNWQE 974
           PL V++    +W +
Sbjct: 118 PLDVHVGRGRSWHD 131


>gi|269101927|ref|ZP_06154624.1| putative exodeoxyribonuclease IX [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161825|gb|EEZ40321.1| putative exodeoxyribonuclease IX [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 258

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 133/261 (50%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP--VNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R   A         G P   N     C  L K++  S+     +H   
Sbjct: 4   HLVVIDALNLIRRVHAA-------QHGEPNVENTAQVCCQALTKIIAMSQP----THIVA 52

Query: 64  IFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD+      +R E+ P YK  R  +PE L   +  ++ A  A GI ++   G EADD++
Sbjct: 53  VFDHNGEDRGWRAELLPKYKEGRKPMPEELAQGMDKIQDAFMAMGIDSLLSSGDEADDLV 112

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT           VTIISTDK   QL+ PT  + D  +E  +D   + +++G+ PE++  
Sbjct: 113 ATLAIKVASHNEQVTIISTDKGYCQLLQPTLRIRDYFQERWLDSPFIEQEYGVKPEQLPD 172

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGIPGIG K A  LL +YG+LE++L +A  + +K +++ IL   + AR
Sbjct: 173 YWGLAGISSSKIPGIPGIGPKAAVELLSQYGDLESVL-SADDLAEKWQKK-ILGNEDLAR 230

Query: 242 LSRKLVMLRTDVPITIPLEHL 262
             +++  L+TD+ +   L+ +
Sbjct: 231 ACKQVASLKTDLELGFNLQDI 251


>gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29]
 gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase
 gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29]
          Length = 607

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 135/284 (47%), Gaps = 19/284 (6%)

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           + E ++L K ++++  +  +       R HTF +     T R++      Q +P      
Sbjct: 321 VQEAKKLGKWRTSWVQTFLD-TRDSEDRCHTFVNPLQARTSRMSITGIPAQTLPASD--- 376

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
             +RR F++ P   + S DY   ELR+LA ++    + Q F++  D+H M A   FG +I
Sbjct: 377 WTVRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAFGDHI 436

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            K  P+ R++AKT+NF  +YG     +A Q  I    A   +  +   +PG+  Y  K  
Sbjct: 437 TKDDPE-RKYAKTVNFGRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPGVTRYSRKLA 495

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           N  ++NGY+    GRR+  D   +           +A+N  IQ ++ D+T +A+I +H++
Sbjct: 496 NEAKRNGYIINPMGRRLPVDRSRT----------YSALNYQIQSTSRDVTCKALIRLHEA 545

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
                    + L IHDE+V  +P E+    ++ I   M +   P
Sbjct: 546 ----GFTPYLRLPIHDEIVASLPAEKANWGAREIARLMAEEMGP 585


>gi|294635105|ref|ZP_06713616.1| exodeoxyribonuclease IX [Edwardsiella tarda ATCC 23685]
 gi|291091482|gb|EFE24043.1| exodeoxyribonuclease IX [Edwardsiella tarda ATCC 23685]
          Length = 254

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 86/265 (32%), Positives = 136/265 (51%), Gaps = 25/265 (9%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P     H+          C  L +LL ++      SH   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPC----HEAC--------CAALRQLLGHT----TPSHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    A ++R+ + P YKA R  +P+ L+ ++  +R A  A G+   +  G EADD+ 
Sbjct: 48  VFDDDDRADSWRHRLLPTYKAGRQAMPDSLVAEMDALRAAFAALGVACWQSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ P+++  
Sbjct: 108 ATLADKVARSGHRVTIVSTDKGYCQLLSPQIQIRDYFQKRWLDLPFVRQEFGVEPQQLTD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAET 239
              L G S   IPG+ GIG KTAA LL E+G+LE I  +  ++ +  + R E   E AET
Sbjct: 168 FWGLAGISSSKIPGVAGIGAKTAAALLAEFGSLEAIYQHLPQVAERWRHRLEAQREMAET 227

Query: 240 ARLSRKLVMLRTDVPITIPLEHLIL 264
               R++  L+T + +   L+ L L
Sbjct: 228 C---RRVATLQTTLSLHGNLQQLRL 249


>gi|320011768|gb|ADW06618.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Streptomyces flavogriseus ATCC 33331]
          Length = 302

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 136/269 (50%), Gaps = 29/269 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R + + +      D+ 
Sbjct: 2   LLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDDLVACMDA--DWR 59

Query: 69  AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              +R ++ P YKA+R             ++P+ L PQ+P++     A GI  + +  +E
Sbjct: 60  P-QWRVDLIPTYKAHRVAAETAEGLPDEEEVPDTLSPQVPVIEAVLDALGIARVGVSPYE 118

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY---DTVKEEKIDIEHVIK 170
           ADD+I T T  A      V I++ D+DL QLV        LY        +  D E +  
Sbjct: 119 ADDVIGTLTGRATG---PVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQVTDEEWLRG 175

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----ASRIKQ 226
           K+G+     V L  L GD  D +PG+PGIG KTAA LL  +G+L  I+      A+R+  
Sbjct: 176 KYGVDGAGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDAFGDLAGIMAAVDDPAARLTP 235

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPI 255
            +RR  + E  +   ++ K+V +  DVP+
Sbjct: 236 SQRRR-LDEARDYVAVAPKVVRVADDVPL 263


>gi|330468020|ref|YP_004405763.1| 5'-3' exonuclease [Verrucosispora maris AB-18-032]
 gi|328810991|gb|AEB45163.1| 5'-3' exonuclease [Verrucosispora maris AB-18-032]
          Length = 308

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 124/231 (53%), Gaps = 19/231 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++  + LVD  S  +RA++  P  + K  DG PVNA+ GF +ML +L++  R   +  
Sbjct: 1   MAQQTPIMLVDAPSLYFRAYFGIPESAAKTADGQPVNAVRGFLDMLAQLVRTRRPGRMVC 60

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANR--PK----IPEMLLPQLPLVRLATQAFGIPAIEIQ 113
             A+  D+    +R  + P YKA+R  P+    +P+ L PQ+P++    +A GI  +   
Sbjct: 61  --AMDHDWRP-DWRVALLPSYKAHRVAPEGGEIVPDTLSPQVPMLLDVLEALGITVVGAA 117

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---LY---DTVKEEKIDIEH 167
           G+EADD++ T   ++  +   V ++S D+DL QL+        LY      K +  D   
Sbjct: 118 GYEADDVLGT---LSVTQPGPVEVVSGDRDLFQLIDDARAVRLLYIGRGVAKLDDCDDAA 174

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           V  ++G+P ++     AL GD  D +PG+ G+G KTAA L+  YG++  IL
Sbjct: 175 VRARYGVPADRYAEFAALRGDPSDGLPGVAGVGEKTAARLIDRYGDIAGIL 225


>gi|134098839|ref|YP_001104500.1| potential 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|291005803|ref|ZP_06563776.1| 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|133911462|emb|CAM01575.1| potential 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338]
          Length = 305

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 121/232 (52%), Gaps = 24/232 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +   +R+++A P      DG PVN++ GFC+ML KL+   R   +    A + +  
Sbjct: 2   LIDSAGLWFRSYFALPDSLTAPDGTPVNSVRGFCDMLAKLVTERRPARLV---ACLDNDW 58

Query: 69  AVTFRNEIYPDYKANR--------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
              FR +  P YKA+R         ++P+ L PQ+P++     A GI   E +GFEADD+
Sbjct: 59  RPQFRVDALPSYKAHRVAEEDPDAEEVPDTLTPQIPVILELLDALGIATAEAEGFEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLV----SPTTCLY---DTVKEEKIDIEHVIKKWG 173
           I    +   ++   V +++ D+DL QLV    +P   +Y      K +    E + +++G
Sbjct: 119 IGALAHRETQD--RVEVVTGDRDLFQLVRTEPTPVRVIYVGGGLSKAQNYGPEELAERYG 176

Query: 174 IPP----EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
           + P    +    +  L GD  D +PG+ GIG KTAA L+ ++G+L+ +L  A
Sbjct: 177 LSPGRAGDDYADMAVLRGDPSDGLPGVAGIGEKTAAKLITQFGSLDALLAAA 228


>gi|51597329|ref|YP_071520.1| exonuclease IX [Yersinia pseudotuberculosis IP 32953]
 gi|153948056|ref|YP_001399986.1| exonuclease IX [Yersinia pseudotuberculosis IP 31758]
 gi|170023304|ref|YP_001719809.1| exonuclease IX [Yersinia pseudotuberculosis YPIII]
 gi|186896435|ref|YP_001873547.1| exonuclease IX [Yersinia pseudotuberculosis PB1/+]
 gi|81638758|sp|Q667H8|XNI_YERPS RecName: Full=Protein Xni
 gi|166918971|sp|A7FFF8|XNI_YERP3 RecName: Full=Protein Xni
 gi|226733943|sp|B2JZ46|XNI_YERPB RecName: Full=Protein Xni
 gi|226733944|sp|B1JQE9|XNI_YERPY RecName: Full=Protein Xni
 gi|51590611|emb|CAH22252.1| exodeoxyribonuclease IX [Yersinia pseudotuberculosis IP 32953]
 gi|152959551|gb|ABS47012.1| exodeoxyribonuclease-9 [Yersinia pseudotuberculosis IP 31758]
 gi|169749838|gb|ACA67356.1| 5'-3' exonuclease [Yersinia pseudotuberculosis YPIII]
 gi|186699461|gb|ACC90090.1| 5'-3' exonuclease [Yersinia pseudotuberculosis PB1/+]
          Length = 251

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             +    + L +L+Q+S+     SH   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CVKACQHALQQLIQHSQ----PSHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++PL+R A    G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLVVKVAGAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ G+G KTA LLLQ+   LE +  N   I +K R++ + ++ + A 
Sbjct: 168 YWGLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPEKWRKK-LQQHQQMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
             +++  L+TD+ ++  L+ L L+
Sbjct: 227 TCKQIATLKTDLLLSGNLQQLRLK 250


>gi|260599148|ref|YP_003211719.1| exonuclease xni [Cronobacter turicensis z3032]
 gi|260218325|emb|CBA33325.1| Uncharacterized exonuclease xni [Cronobacter turicensis z3032]
          Length = 251

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 79/264 (29%), Positives = 133/264 (50%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   TP             +    + L +LL NS+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGTP------------CVDTCLHALEQLLGNSQ----PTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A    +R+++ PDYKA RP +P+ L  ++P +R A    G+P   ++G EADD+ 
Sbjct: 48  VFDDEARAQGWRHQLLPDYKAGRPPMPDDLHQEMPALREAFTRRGVPCWHVEGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL+ P   + D  ++  +D   +  ++G+ P ++  
Sbjct: 108 ATLAVKVATAGHEATIVSTDKGYCQLLRPEIRIRDYFQKRWLDAPFIENEFGVAPGQLAD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG K+A  L+ ++G LE +      + +K R++ +  + E+A 
Sbjct: 168 FWGLAGISSSKIPGVAGIGPKSATQLINDFGTLEALYERLDEVPEKWRKK-LEAHRESAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           + R +  L++D+ +   L+ L L+
Sbjct: 227 ICRDVATLKSDLQLDGNLQQLRLK 250


>gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium linens BL2]
          Length = 578

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 142/291 (48%), Gaps = 47/291 (16%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+D  +  YRAFY+ P      +G PVNA+ G  + + ++++              FD
Sbjct: 1   MVLIDTPALYYRAFYSVPDSIVNDEGQPVNAVRGVLDAIAQMIRR-------------FD 47

Query: 67  YPAV----------TFRNEIYPDYKANRPK-------IPEMLLPQLPLVRLATQAFGIPA 109
            P V           FR  I P+YKA R K       IP  L  QLP++    +A GIP 
Sbjct: 48  SPRVVATMDADWRPAFRTAIMPEYKAARVKDAEAGTEIPPELDAQLPIMTDVLRAAGIPI 107

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-----DTVKEEKID 164
            E+ G EADD+IAT   +A +    V I+S D+DL+ L+   + +         + E I 
Sbjct: 108 AEVDGTEADDVIAT---MAAQSQTPVVIVSPDRDLLALIDAASDVSVLRPRKGGEWEAIS 164

Query: 165 IEHVIKKWGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
              + + +G+P   +   L A+ GD  D +PG PGIG KTAA LL  +G+LE+I I A++
Sbjct: 165 QADLPEAYGVPDGTRYRELAAMRGDPSDGLPGAPGIGEKTAATLLANFGSLESI-IKAAK 223

Query: 224 IKQK------KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
              K      KR   ++E  ET   + +++   TDV   + LE +  E C+
Sbjct: 224 AGVKTGGLSPKRAATLIEEEETLHKTIEVMRCLTDVAHGLDLESVPGE-CD 273


>gi|238754818|ref|ZP_04616169.1| Uncharacterized exonuclease xni [Yersinia ruckeri ATCC 29473]
 gi|238706978|gb|EEP99344.1| Uncharacterized exonuclease xni [Yersinia ruckeri ATCC 29473]
          Length = 232

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/218 (33%), Positives = 120/218 (55%), Gaps = 3/218 (1%)

Query: 49  LQNSRKESIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           LQ     S  +H   +FD    + ++R+   PDYKA R  +P+ L  ++P +R A    G
Sbjct: 14  LQTLISHSQPTHAVAVFDEDDRSDSWRHRCLPDYKAGRSPMPDNLQQEMPQLRQAFADLG 73

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +      G EADD+ AT        G  VTI+STDK   QL++P   + D  ++  +D+ 
Sbjct: 74  VCCWHSPGNEADDLAATLVAKIAGAGHQVTIVSTDKGYCQLLAPRVQIRDYFQKRWLDLP 133

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +++G+ P ++     L G S   IPG+ GIG KTAALLLQ+ G+LE I  +  +I +
Sbjct: 134 FVQQEFGVAPHQLPDYWGLAGISSSKIPGVAGIGAKTAALLLQQAGSLEAIYQDLEQIPE 193

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           K R++ + ++   A + +++  L+TD+ ++  L+ L L
Sbjct: 194 KWRKK-LQQHQAMAFICKQVATLKTDLSLSGNLQQLRL 230


>gi|27363779|ref|NP_759307.1| flap endonuclease-like protein [Vibrio vulnificus CMCP6]
 gi|81449164|sp|Q8DFB4|XNI_VIBVU RecName: Full=Protein Xni
 gi|27359895|gb|AAO08834.1| exonuclease IX [Vibrio vulnificus CMCP6]
          Length = 259

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 130/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + LQ    ES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IANTIQNTRRTLQRIISESHPTHIVAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P+YK  R  +PE LL  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHLGSDRGWRAEILPEYKQGRKPMPEPLLNGLEKIQEAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P+++    
Sbjct: 115 LACKVAQHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDQPFIEQEFGVKPQQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   + GIPGIG K A  +L ++ ++E   ++      KK R    ++ E AR  
Sbjct: 175 GLTGISSSQVTGIPGIGPKAAKEILSQFDDIEQAFLSPDL--PKKYRTKFDQHIELARRC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ L
Sbjct: 233 KRVSALKTDIELGFNLQDL 251


>gi|261344748|ref|ZP_05972392.1| hypothetical protein PROVRUST_06007 [Providencia rustigianii DSM
           4541]
 gi|282567191|gb|EFB72726.1| exodeoxyribonuclease IX [Providencia rustigianii DSM 4541]
          Length = 255

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 3/198 (1%)

Query: 58  ASHFAVIFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           A+H   +FD      ++R+E  PDYKA R  +PE L  +LP +    +  GI   + +G 
Sbjct: 41  ATHIVAVFDEDGRHHSWRHEKLPDYKAGRQPMPEELQTELPSLVSQFEENGIHCWQSEGD 100

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADD+ AT        G  VTI+STDK   QL+SP   + D  ++  +D+  +  ++G+ 
Sbjct: 101 EADDLAATLAKRIASAGHTVTIVSTDKGYCQLLSPNLRIRDYFQKRWLDVPFIENEFGVK 160

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++     L G S   +PG+ GIG K+A  LLQ + N+EN+  N   +++K +++ +  
Sbjct: 161 PEQLPDYWGLAGISSSKVPGVAGIGAKSATTLLQRFQNIENLYANFDSLEEKWQKK-LAN 219

Query: 236 YAETARLSRKLVMLRTDV 253
             E A + R +  L+TD+
Sbjct: 220 NQEIAMICRDIATLKTDI 237


>gi|22127027|ref|NP_670450.1| exonuclease IX [Yersinia pestis KIM 10]
 gi|45442587|ref|NP_994126.1| exonuclease IX [Yersinia pestis biovar Microtus str. 91001]
 gi|108813130|ref|YP_648897.1| exonuclease IX [Yersinia pestis Nepal516]
 gi|145598963|ref|YP_001163039.1| exonuclease IX [Yersinia pestis Pestoides F]
 gi|149366967|ref|ZP_01889000.1| exodeoxyribonuclease IX [Yersinia pestis CA88-4125]
 gi|166011901|ref|ZP_02232799.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211570|ref|ZP_02237605.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167419722|ref|ZP_02311475.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425285|ref|ZP_02317038.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468867|ref|ZP_02333571.1| exonuclease IX [Yersinia pestis FV-1]
 gi|218928200|ref|YP_002346075.1| exonuclease IX [Yersinia pestis CO92]
 gi|229837739|ref|ZP_04457899.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|229840961|ref|ZP_04461120.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843062|ref|ZP_04463212.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229903573|ref|ZP_04518686.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|294503049|ref|YP_003567111.1| exonuclease IX [Yersinia pestis Z176003]
 gi|123246269|sp|Q1CFD3|XNI_YERPN RecName: Full=Protein Xni
 gi|123776877|sp|Q7CH07|XNI_YERPE RecName: Full=Protein Xni
 gi|156630389|sp|A4TLA4|XNI_YERPP RecName: Full=Protein Xni
 gi|21960075|gb|AAM86701.1|AE013915_10 5'-3' exonuclease [Yersinia pestis KIM 10]
 gi|45437452|gb|AAS63003.1| exodeoxyribonuclease IX [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776778|gb|ABG19297.1| exodeoxyribonuclease IX [Yersinia pestis Nepal516]
 gi|115346811|emb|CAL19697.1| exodeoxyribonuclease IX [Yersinia pestis CO92]
 gi|145210659|gb|ABP40066.1| exodeoxyribonuclease IX [Yersinia pestis Pestoides F]
 gi|149290581|gb|EDM40657.1| exodeoxyribonuclease IX [Yersinia pestis CA88-4125]
 gi|165989167|gb|EDR41468.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207341|gb|EDR51821.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962463|gb|EDR58484.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167055685|gb|EDR65469.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679343|gb|EEO75446.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229689938|gb|EEO81997.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697327|gb|EEO87374.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704116|gb|EEO91128.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|262361085|gb|ACY57806.1| exonuclease IX [Yersinia pestis D106004]
 gi|262365327|gb|ACY61884.1| exonuclease IX [Yersinia pestis D182038]
 gi|294353508|gb|ADE63849.1| exonuclease IX [Yersinia pestis Z176003]
 gi|320014164|gb|ADV97735.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 251

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             +    + L +L+Q+S+     SH   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CVKACQHALQQLIQHSQ----PSHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++PL+R A    G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ G+G KTA LLLQ+   LE +  N   I +K R++ + ++ + A 
Sbjct: 168 YWGLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPEKWRKK-LQQHQQMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
             +++  L+TD+ ++  L+ L L+
Sbjct: 227 TCKQIATLKTDLLLSGNLQQLRLK 250


>gi|302550272|ref|ZP_07302614.1| 5'-3' exonuclease [Streptomyces viridochromogenes DSM 40736]
 gi|302467890|gb|EFL30983.1| 5'-3' exonuclease [Streptomyces viridochromogenes DSM 40736]
          Length = 301

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/268 (31%), Positives = 135/268 (50%), Gaps = 28/268 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+++ R +    H     D  
Sbjct: 2   LLDTASLYFRAYFGVPESVKAPDGTPVNAVRGLLDFIDRLVKDHRPD----HLVACMDAD 57

Query: 69  -AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + +  +E
Sbjct: 58  WRPHWRVELIPSYKAHRVAEERAAGPDEEEVPDTLSPQVPVIEAVLDAVGIARVGVAEYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY--DTVKEEKIDIEHVIK- 170
           ADD+I T+T  A+     V I++ D+DL QLV        LY    V   ++  E V++ 
Sbjct: 118 ADDVIGTFTAGAKG---PVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQLTDEAVLRG 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--- 227
           K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  I+      + K   
Sbjct: 175 KYGVDGSGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIMAAVEDRRSKLTP 234

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPI 255
            +R  + E      ++ K+V +  DVP+
Sbjct: 235 TQRRRLDEARPYLAVAPKVVRVADDVPL 262


>gi|71282215|ref|YP_270212.1| exonuclease IX [Colwellia psychrerythraea 34H]
 gi|123631612|sp|Q47YA8|XNI_COLP3 RecName: Full=Protein Xni
 gi|71147955|gb|AAZ28428.1| exodeoxyribonuclease IX [Colwellia psychrerythraea 34H]
          Length = 290

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 133/272 (48%), Gaps = 19/272 (6%)

Query: 6   HLFLVDGSSFIYRAFYAT--PLLSRKHD-----------GLPVNAIAGFCNMLWKLLQNS 52
           HL L+D  + I R +     P +  K D            +  N      N L K++   
Sbjct: 4   HLILIDALNLIRRVYAVQERPFIQIKQDHDDELSASTLKQVLFNTQNTCVNALIKIIDQH 63

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           +     +H   +FD     +R +++  YK  R K+P+ L  +L  ++ A    G+ ++  
Sbjct: 64  Q----PTHALTVFDSQEPCWRYQLFEGYKKGRKKMPDHLANKLIDIQDAFMEQGVDSLTS 119

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
              EADD+IAT        G  VTIISTDK  + L+SP   +YD      +D EHV  K+
Sbjct: 120 DEDEADDLIATLAVKMALHGQKVTIISTDKGFLPLLSPNIHIYDYFNRRYLDEEHVQSKF 179

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            +   +++    LTGD+ + I G+ GIG  TAA LL +YG+L+ IL  A+ +K     E 
Sbjct: 180 SVKTSQLIDFWTLTGDNTNKIEGVSGIGQVTAAKLLNQYGSLKAIL-EATDLKD-SLAEK 237

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           + +  E   L+RKL+ L+ D+P+   L+ + L
Sbjct: 238 LTQSLEQMDLARKLLTLKQDIPLGFNLKDIRL 269


>gi|240172771|ref|ZP_04751430.1| 5'-3' exonuclease [Mycobacterium kansasii ATCC 12478]
          Length = 318

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 135/278 (48%), Gaps = 33/278 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R         V  D
Sbjct: 5   LLLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQHR----PGRLVVCLD 60

Query: 67  YP-AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 FR ++   YKA+R             ++P+ L PQ+ ++     A+GIP     
Sbjct: 61  LDWRPQFRVDLISSYKAHRVAETEPEGRPDIEEVPDELTPQVDMIMELLDAYGIPTAGAP 120

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIE 166
           GFEADD+I T    A++    V ++S D+DL+Q+V+    P   LY      K       
Sbjct: 121 GFEADDVIGTLA--AQERHDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLSKATLFGPA 178

Query: 167 HVIKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V +++G+P ++       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A 
Sbjct: 179 EVAERYGLPADRAGSAYAELALLRGDPSDGLPGVPGVGEKTAAALLAAHGSLDQIMSAAH 238

Query: 223 RIKQ---KKRRENILEYAETARLSRKLVMLRTDVPITI 257
             K    K  R  +L  ++   ++  +V + TD P+ +
Sbjct: 239 DPKSGMAKGLRAKVLGASDYIEVAGSVVRVATDSPVQL 276


>gi|320183564|gb|EFW58410.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 202

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 108/193 (55%), Gaps = 1/193 (0%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R++  PDYKA RP +PE L  ++P +R A +  G+P       EADD+ AT      + 
Sbjct: 9   WRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSSNEADDLAATLAVKVTQA 68

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++     L G S  
Sbjct: 69  GHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSS 128

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
            +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A L R +  L+T
Sbjct: 129 KVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAFLCRDIARLQT 187

Query: 252 DVPITIPLEHLIL 264
           D+ I   L+ L L
Sbjct: 188 DLHIDGNLQQLRL 200


>gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2]
 gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2]
          Length = 604

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 122/515 (23%), Positives = 235/515 (45%), Gaps = 54/515 (10%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  YD  V+ R  GI M        D  ++++++D      G   H +  + + ++   
Sbjct: 95  HNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFKEGGIGHKLEELVKHYIDAN 154

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL---IVEKLLHVYERLD 573
             E +K+  +++  +  +        +E +N   QL+  + P L   +++KL+ +   + 
Sbjct: 155 VAENVKTLMATLAREYKTTKAHIWTKVELTNPYYQLYSGMDPILAARLLQKLIPLVPAVS 214

Query: 574 KPMI-------DVVSQMEITGIQIDQDLLKQVSAEISKN---LLSLEENIYDLSGEKFNL 623
           + ++       ++ S ME  G  +D +  +++S ++ +      S  + +Y L     N+
Sbjct: 215 QDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADILYGLE----NV 270

Query: 624 SSPKQLGDILF---TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +SP Q+ + L     K+K     +T+TGQ K     L+++    +P+ + I E ++  K 
Sbjct: 271 NSPIQVAEALMRRGVKIK----ERTETGQPKVDKVLLDRLIKEGDPLAEAITEAKKWGKW 326

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           + T+     +  + +  R H   +     T R++      Q +P    L   +RR F++ 
Sbjct: 327 EKTWVRKFLDSRDSK-DRCHANINPLQARTARMSITGIPAQTLPSGDWL---VRRCFLAD 382

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-GVNIEKVSPQMRR 799
             + + S DY   ELR+LA ++    + Q F++  D+H M A   +    I K SP+ R+
Sbjct: 383 EGQLMASVDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAWPDREITKDSPE-RK 441

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           +AKT+NF  +YG     +A Q  +    A   +  +   +PG+     K +    QNG++
Sbjct: 442 YAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQRLSAKLQREASQNGHI 501

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T  GRR+  D    P  +       +A+N  IQ ++ D+T  A+I +H++         
Sbjct: 502 VTPKGRRLPVD----PSRAY------SALNYLIQSTSRDVTGEALIRLHEA----GFTKY 547

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + L IHDE++  VPE++    +Q I   M +   P
Sbjct: 548 LRLPIHDEILASVPEDKAQWGAQEIARLMAEQMGP 582


>gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole]
          Length = 609

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 128/516 (24%), Positives = 238/516 (46%), Gaps = 65/516 (12%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++   
Sbjct: 95  HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPV 154

Query: 517 RKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             E +K+      +K     DKI       D   + +A    + IL   LL +   +V +
Sbjct: 155 TAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYA--GMDTILVSRLLGKVAPLVPE 212

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI---SKNLLSLEENIYDLSGEKF 621
             H     +  + +V+S +E TG  +D D  +++SA++   S++  ++    Y +     
Sbjct: 213 SSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVARYAYGVD---- 268

Query: 622 NLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +++S ++L D L  T +K     +T TG+ +  A+ LE +    N + K  +E ++    
Sbjct: 269 SVNSTEKLADGLERTGVKIK--GRTTTGKRQVNAELLEALAEEGNALAKAAIEAKKWGSW 326

Query: 681 KSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           + T+   + N I +R    RVH   +     TGR+++  P+ QN+P    +   +RR F+
Sbjct: 327 EKTW---VRNFIERRDANDRVHPGINPLQARTGRMSTSNPSAQNLPSGDWM---VRRCFL 380

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P + + S DY   ELR+LA ++    + + FE   D+H+ V A+  GV+        R
Sbjct: 381 ADPGQIIASVDYRAQELRVLAALSGDQTMLRAFEEESDLHQ-VTADAAGVD--------R 431

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           +  K  NF + YG    +LAT   I   EA   ++ +   +PG+    ++ +      G+
Sbjct: 432 KIGKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYPGVDTLNKRMQQEAGSAGF 491

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           + T  GRR+  D    P  +       +A+N  IQ S+ D+T  A++ +H++        
Sbjct: 492 ITTPTGRRLPVD----PDRAY------SALNYLIQSSSRDVTGAAVLRLHEA----GFTP 537

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
            M L +HDE++  +PE +   A + +   ME+   P
Sbjct: 538 NMRLVVHDEVLLSLPEADAEAAVKEVGQIMEQRIGP 573


>gi|165927080|ref|ZP_02222912.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939839|ref|ZP_02228379.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|270487354|ref|ZP_06204428.1| 5'-3' exonuclease C-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|165912242|gb|EDR30879.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920976|gb|EDR38200.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|270335858|gb|EFA46635.1| 5'-3' exonuclease C-terminal domain protein [Yersinia pestis KIM
           D27]
          Length = 239

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 3/219 (1%)

Query: 49  LQNSRKESIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           LQ   + S  SH   +FD    + ++R++  PDYKA R  +P+ L  ++PL+R A    G
Sbjct: 21  LQQLIQHSQPSHAVAVFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIRQAFNELG 80

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +      G EADD+ AT        G  VTI+STDK   QL++P   + D  ++  +D+ 
Sbjct: 81  VACWHSPGNEADDLAATLVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMP 140

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +++G+ P ++     L G S   IPG+ G+G KTA LLLQ+   LE +  N   I +
Sbjct: 141 FVKQEFGVLPRQLPDYWGLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPE 200

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           K R++ + ++ + A   +++  L+TD+ ++  L+ L L+
Sbjct: 201 KWRKK-LQQHQQMAFTCKQIATLKTDLLLSGNLQQLRLK 238


>gi|323356520|ref|YP_004222916.1| 5'-3' exonuclease [Microbacterium testaceum StLB037]
 gi|323272891|dbj|BAJ73036.1| 5'-3' exonuclease [Microbacterium testaceum StLB037]
          Length = 309

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 25/279 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L L+D +S  +RAFY  P   R  DG  VNA+ G  +M+ KL+       + + + 
Sbjct: 4   RPEKLLLLDTASLYFRAFYGVPDKVRAADGTSVNAVRGLLDMIAKLVSTYGPTRVVACWD 63

Query: 63  VIFDYPAVTFRNEIYPDYKA-----------NRPKIPEMLLPQLPLVRLATQAFGIPAIE 111
              D     +R E+ P YKA           +R + P+ LL Q+PL+R A    GIP + 
Sbjct: 64  ---DDWRPAWRVELLPSYKAHRVVEAVSTGPDREETPDPLLAQIPLIREALAVLGIPVVG 120

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDT---VKEEKIDI 165
               EADD+I T   +A      V I++ D+DL QL+        +Y        E +D 
Sbjct: 121 AAEHEADDVIGT---LATAADVPVDIVTGDRDLFQLIDDDHHVRIVYTARGMSNLELVDD 177

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--NASR 223
             V+ K+GI   +      L GD  D +PG+ GIG K+AA LL  +G+L+ IL    A  
Sbjct: 178 AVVVSKYGIHAAQYADFAVLRGDPSDGLPGVAGIGEKSAAALLTAHGDLDGILTAAEAGT 237

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
                +R  IL  A+   ++  +V +  D+ + +P + L
Sbjct: 238 GGTPAQRAKILAAADYLAVAPTVVRVVRDLDLDVPDDEL 276


>gi|239940070|ref|ZP_04692007.1| putative 5'-3' exonuclease [Streptomyces roseosporus NRRL 15998]
 gi|239986559|ref|ZP_04707223.1| putative 5'-3' exonuclease [Streptomyces roseosporus NRRL 11379]
 gi|291443499|ref|ZP_06582889.1| 5'-3' exonuclease [Streptomyces roseosporus NRRL 15998]
 gi|291346446|gb|EFE73350.1| 5'-3' exonuclease [Streptomyces roseosporus NRRL 15998]
          Length = 302

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 138/268 (51%), Gaps = 27/268 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+ + R + + + +    D+ 
Sbjct: 2   LLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIGRLVHDHRPDELVACWDN--DWR 59

Query: 69  AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              +R ++ P YKA+R             +IP+ L PQ+P++     A GI  + +  +E
Sbjct: 60  P-QWRVDLIPTYKAHRVAEETPAGQTDEEEIPDTLSPQVPIIEDVLAALGIARVGVTPYE 118

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLY--DTVKEEKIDIEHVIK- 170
           ADDII T T  A  +G  V I++ D+DL QLV        LY    V   ++  E  ++ 
Sbjct: 119 ADDIIGTLT--ARAKG-PVDIVTGDRDLYQLVDDARQVRVLYPLKGVGTLQVTDEAWLRE 175

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--- 227
           K+G+     V L  L GD  D +PG+PGIG KTAA LL  YG+L+ I+      K K   
Sbjct: 176 KYGVDGAGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDAYGDLDGIMAAVDDPKAKLTP 235

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPI 255
            +R+ + E      ++ K+V +  DVP+
Sbjct: 236 SQRKRLDESRAYVAVAPKVVRVAGDVPL 263


>gi|269849483|sp|B7NVU6|XNI_ECO7I RecName: Full=Protein Xni
          Length = 251

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 133/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCVETCQHALD------------QLIMHSQ----PTHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP + E L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMQEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|77362377|ref|YP_341951.1| exonuclease IX [Pseudoalteromonas haloplanktis TAC125]
 gi|123586738|sp|Q3ICC5|XNI_PSEHT RecName: Full=Protein Xni
 gi|76877288|emb|CAI89505.1| putative exonuclease IX, 5'-3' exonuclease [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 257

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 138/265 (52%), Gaps = 18/265 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKH--DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL L+D  + I R  YA     + H  + +   + A   +   KLL +++    A+H   
Sbjct: 4   HLLLIDALNLI-RRIYAVDANQKHHSDEQMLKASCARVAHACSKLLSSTK----ATHAIA 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    ++R   Y DYK +R  +P++L   L   + A +  GI   E    EADDIIAT
Sbjct: 59  VFDGDK-SWRYHFYKDYKHSRAPMPQILKDALVQFKAAIEETGIVVFEPINDEADDIIAT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A     +  I+STDK  +  ++    +YD  K+  +D + + +++G+  +K+V   
Sbjct: 118 LANKASHNNISSVIVSTDKGFLPFLNEHIAVYDYFKKHYLDQDSIKQRFGVEQKKLVEFW 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL----INASRIKQKKRRENILEYAET 239
           A  GD  ++IPG+ GIG K+A LL+  Y ++E+ L    ++AS   +KK  EN+  Y   
Sbjct: 178 AFAGDKTNDIPGVKGIGTKSAQLLVNNYSSVEDALNDDALSASL--RKKLTENMDMYV-- 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHLIL 264
             +S++LV LRTD+ +   L+ L L
Sbjct: 234 --ISKQLVSLRTDINLGFSLKQLRL 256


>gi|326780346|ref|ZP_08239611.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Streptomyces cf. griseus XylebKG-1]
 gi|326660679|gb|EGE45525.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Streptomyces cf. griseus XylebKG-1]
          Length = 302

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 84/268 (31%), Positives = 138/268 (51%), Gaps = 27/268 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R + + + +    D+ 
Sbjct: 2   LLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIGRLVQDHRPDDLVACWDN--DWR 59

Query: 69  AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              +R ++ P YKA+R             ++P+ L PQ+P++     A GI  + +  +E
Sbjct: 60  P-QWRVDLIPTYKAHRVAEETPAGQTDEEEVPDTLSPQVPIIEDVLAALGIARVGVTPYE 118

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLY--DTVKEEKIDIEHVIK- 170
           ADD+I T   +A +    V I++ D+DL QLV        LY    V   ++  E  ++ 
Sbjct: 119 ADDVIGT---LAGRATGPVDIVTGDRDLYQLVDDARQVRVLYPLKGVGTLQVTDEAWLRE 175

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--- 227
           K+G+     V L  L GD  D +PG+PGIG KTAA LL  YG+L+ I+      K K   
Sbjct: 176 KYGVDGAGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDAYGDLDGIMAAVDDPKAKLTP 235

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPI 255
            +R+ + E      ++ K+V +  DVP+
Sbjct: 236 SQRKRLDEARAYVAVAPKVVRVAGDVPL 263


>gi|328472520|gb|EGF43383.1| flap endonuclease-like protein [Vibrio parahaemolyticus 10329]
          Length = 260

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEAKPTHIIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIDKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E     AS     K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFEDIEAAY--ASDELAPKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+ D+ +   L+ +
Sbjct: 233 KRVAALKCDIELGFNLQDI 251


>gi|254392836|ref|ZP_05008006.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|197706493|gb|EDY52305.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 301

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 135/268 (50%), Gaps = 28/268 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA++  P   R  DG PVNA+ G    + +L+Q+ R + + + +    D+ 
Sbjct: 2   LLDTASLYFRAYFGVPDTVRAPDGTPVNAVRGLLEFIGRLVQDHRPDDLVACWDN--DWR 59

Query: 69  AVTFRNEIYPDYKANRPKI-----------PEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
              +R E+ P YKA+R  +           P+ L PQ+P++    +A GI  +   G+EA
Sbjct: 60  P-HWRVELIPSYKAHRVAVETEAGPDEEEAPDTLTPQVPVIAEVLEALGIARVGADGYEA 118

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY---DTVKEEKIDIEHVIKK 171
           DD+I T T  A   G  V I++ D+DL QLV        LY        +  D   + ++
Sbjct: 119 DDVIGTLT--ARATG-PVDIVTGDRDLFQLVDDARGRRVLYPLKGVGTLQTTDEGWLRER 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----ASRIKQK 227
           +G+       L  L GD  D +PG+PGIG KTAA LL  +G+L  I+      ASR+   
Sbjct: 176 YGVDGPGYADLALLRGDPSDGLPGVPGIGEKTAAKLLDAFGDLAGIMAAVDDPASRLTPA 235

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPI 255
           +RR  + E      ++ K+V + TD P+
Sbjct: 236 QRRR-LDEARGYVAVAPKVVRVATDAPL 262


>gi|28897471|ref|NP_797076.1| exonuclease IX [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839025|ref|ZP_01991692.1| exodeoxyribonuclease IX [Vibrio parahaemolyticus AQ3810]
 gi|260365319|ref|ZP_05777872.1| 5'-3' exonuclease [Vibrio parahaemolyticus K5030]
 gi|260896294|ref|ZP_05904790.1| 5'-3' exonuclease [Vibrio parahaemolyticus Peru-466]
 gi|81728352|sp|Q87RT0|XNI_VIBPA RecName: Full=Protein Xni
 gi|28805683|dbj|BAC58960.1| exodeoxyribonuclease IX [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747495|gb|EDM58439.1| exodeoxyribonuclease IX [Vibrio parahaemolyticus AQ3810]
 gi|308086148|gb|EFO35843.1| 5'-3' exonuclease [Vibrio parahaemolyticus Peru-466]
 gi|308113496|gb|EFO51036.1| 5'-3' exonuclease [Vibrio parahaemolyticus K5030]
          Length = 260

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEAKPTHIIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E     AS     K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFEDIEAAY--ASDELAPKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+ D+ +   L+ +
Sbjct: 233 KRVAALKCDIELGFNLQDI 251


>gi|284991144|ref|YP_003409698.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Geodermatophilus obscurus DSM 43160]
 gi|284064389|gb|ADB75327.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 305

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 112/227 (49%), Gaps = 18/227 (7%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RAFY  P      DG PVNA+ GF +M  +L+     + + + +    D  
Sbjct: 2   LLDAASLYFRAFYGVPTSVTSPDGRPVNAVRGFLDMTARLVTAHAPDRLVACWD---DDW 58

Query: 69  AVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              FR E  P YKA+R       + P+ L PQ+P++     A G+  +   G+EADD+I 
Sbjct: 59  RPAFRVEALPSYKAHRLSPDGGEETPDELGPQVPVLVEVLAAAGLARVGAPGYEADDVIG 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDT---VKEEKIDIEHVIKKWGIPP 176
           T T  A      V +++ D+DL QLV        LY        E +D   V  K+GIP 
Sbjct: 119 TLTTRARG---PVDVVTGDRDLFQLVDDERGVRVLYTARGITDLELVDEAAVTAKYGIPG 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
                   L GD  D +PG+ GIG KTAA L+ E+G+L  I   A+R
Sbjct: 176 RAYADFAVLRGDPSDGLPGVAGIGAKTAAALITEFGDLAGIRAAAAR 222


>gi|260901980|ref|ZP_05910375.1| 5'-3' exonuclease [Vibrio parahaemolyticus AQ4037]
 gi|308108415|gb|EFO45955.1| 5'-3' exonuclease [Vibrio parahaemolyticus AQ4037]
          Length = 260

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEAKPTHIIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E     AS     K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFEDIEAAY--ASDELAPKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+ D+ +   L+ +
Sbjct: 233 KRVAALKCDIDLGFNLQDI 251


>gi|317507055|ref|ZP_07964819.1| 5'-3' exonuclease [Segniliparus rugosus ATCC BAA-974]
 gi|316254658|gb|EFV13964.1| 5'-3' exonuclease [Segniliparus rugosus ATCC BAA-974]
          Length = 325

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 135/289 (46%), Gaps = 43/289 (14%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           LVDG+   +RAFYA P      DG PVNA+ GFC+ML  L++  R   +A    +  D+ 
Sbjct: 2   LVDGAGLWFRAFYALPESITAPDGRPVNAVRGFCDMLAALVERDRPNRLA--VCLDLDWR 59

Query: 69  AVTFRNEIYPDYKANR------PKI---------PEMLLPQLPLVRLATQAFGIPAIEIQ 113
              FR E+ P+YKA+R      P           PE L PQ+ ++     A G+     +
Sbjct: 60  P-RFRVELLPEYKAHRVAPGGDPDAPGAGPGEAEPESLGPQVEMILALLDAAGVATAGAE 118

Query: 114 GFEADDIIATYTYIAEKEGFA-------VTIISTDKDLMQLVS----PTTCLY---DTVK 159
           GFEADD+IAT      +   +       V +++ D+DL+QL +    P    Y      K
Sbjct: 119 GFEADDVIATLAARERRSASSLNRREAGVVVVTGDRDLLQLAADAPVPVQVRYLGRGVAK 178

Query: 160 EEKIDIEHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
            E      V  ++ +P E+       L  L GD  D +PG+ GIG KTAA L+  +G L 
Sbjct: 179 SELFGPAEVADRYSLPLERAGAAYAELAVLRGDPSDGLPGVAGIGEKTAAKLISAFGGLA 238

Query: 216 NIL-------INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITI 257
             L       ++++R+   +    ++   +    + ++V+ R D P+ +
Sbjct: 239 PALEAAKRGEVSSARVASARVESALVAAEDYIGRAVRVVVTREDAPVEL 287


>gi|333000965|gb|EGK20535.1| exonuclease xni [Shigella flexneri K-272]
 gi|333015531|gb|EGK34870.1| exonuclease xni [Shigella flexneri K-227]
          Length = 247

 Score =  119 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 115/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD    +  +R++  PDYKA+RP +PE L  ++P +R A +  G+P     
Sbjct: 36  SQPTHAVAVFDDENRSSGWRHQRLPDYKADRPPMPEELHDEMPALRAAFEQRGVPCWSAS 95

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
             EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 96  DNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFG 155

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+++     L G     +PG+ GIG K+A  LL E+ +LE I  N   + +K R++ +
Sbjct: 156 VQPQQLPDYWGLAGICSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKK-L 214

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 215 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 245


>gi|84394481|ref|ZP_00993194.1| exodeoxyribonuclease IX [Vibrio splendidus 12B01]
 gi|84374896|gb|EAP91830.1| exodeoxyribonuclease IX [Vibrio splendidus 12B01]
          Length = 257

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 4/214 (1%)

Query: 54  KESIASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE 111
           KES  +H   +FD+      +R E+ P YK NR  +PE L+  L  ++ A    GI ++ 
Sbjct: 43  KESKPTHIIAVFDHHLQDRGWRAEVLPAYKQNRKPMPEPLMKGLDAIQQAWWELGIDSLL 102

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK 171
             G EADD++AT        G  VTIISTDK   QL+SPT  + D  +   +D   +  +
Sbjct: 103 SDGDEADDLVATLAKKVADHGETVTIISTDKGYCQLLSPTLQIRDYFQHRWLDKPFIEAE 162

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +G+ PE++     LTG S   +PGIPG+G K A  +L  Y ++E   +       KK R+
Sbjct: 163 FGVKPEQLADYWGLTGVSSSQVPGIPGVGPKAAKEILTTYPDIETAFLAEDL--PKKYRK 220

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
              E+ E+AR+ + +  L+TD+ +   L+ +  E
Sbjct: 221 KFDEHIESARVCKLVSALKTDIDLGFNLQDIRYE 254


>gi|89075438|ref|ZP_01161855.1| exonuclease IX [Photobacterium sp. SKA34]
 gi|89048854|gb|EAR54424.1| exonuclease IX [Photobacterium sp. SKA34]
          Length = 258

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 129/260 (49%), Gaps = 15/260 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP-VNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           HL ++D  + I R   A P       G P V A A  C    + L+   K S  +H   +
Sbjct: 4   HLVVIDALNLIRRVHAARP-------GEPDVKATADTCC---RALKKIIKISQPTHIVAV 53

Query: 65  FDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           FD+      +R E+ P YK  R  +P+ L+  + +++ A    GI ++   G EADD++A
Sbjct: 54  FDHNGDDRGWRAELLPHYKEGRKPMPDELMTGMDIIQDAFMEIGIDSLLSDGDEADDLVA 113

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T        G  VTIISTDK   QL+ PT  + D  +E  +D   + K++G+ P+K+   
Sbjct: 114 TLALKVASRGEQVTIISTDKGYCQLLQPTLRIRDYFQERWLDSAFIEKEYGVAPDKLTDY 173

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L G S   IPGI GIG K A  LL +Y  LE IL  A+     K ++ I  + E A  
Sbjct: 174 WGLAGISSSKIPGIAGIGPKAAVELLSQYPTLETIL--AADDLPAKWQKKITGHHEVALA 231

Query: 243 SRKLVMLRTDVPITIPLEHL 262
           S+ +  L+TD+ +   L+ +
Sbjct: 232 SKAVSSLKTDLELGFNLQDI 251


>gi|153835061|ref|ZP_01987728.1| exodeoxyribonuclease IX [Vibrio harveyi HY01]
 gi|148868496|gb|EDL67599.1| exodeoxyribonuclease IX [Vibrio harveyi HY01]
          Length = 260

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 131/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTGRTLTRILSEAQPTHIIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMKGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PG+G K A  +L ++ ++E     AS     K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGVGPKAAKEILTQFEDIEAAY--ASEELVPKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+ D+ +   L+ +
Sbjct: 233 KRVAALKCDIELGFNLQDI 251


>gi|126173609|ref|YP_001049758.1| exonuclease IX [Shewanella baltica OS155]
 gi|166918967|sp|A3D2C6|XNI_SHEB5 RecName: Full=Protein Xni
 gi|125996814|gb|ABN60889.1| 5'-3' exonuclease [Shewanella baltica OS155]
          Length = 262

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +     L    I+  C    KLL+  R     +H A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDETDMQS-LTERVISA-CT---KLLRVHR----PTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++    A  I +I     EADD+IAT 
Sbjct: 53  WDGHEISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL       +D   ++ +DI  + +K G+   + + L A
Sbjct: 112 AIKTAKAQGEAIIVSTDKGFSQLNHRHISQWDHFNQQYLDIAALEQKLGVERSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ + +L  +  + S +  K+ ++ + E  E ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNLGAKQAKK-LAEGKEMARLSY 230

Query: 245 KLVMLRTDVPITIPLE 260
           KL  L+TD+P+ I L+
Sbjct: 231 KLAQLQTDLPLNINLK 246


>gi|149408291|ref|YP_001294570.1| hypothetical protein ORF062 [Pseudomonas phage M6]
          Length = 664

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 143/613 (23%), Positives = 267/613 (43%), Gaps = 122/613 (19%)

Query: 441 GKNTLTKEILSYLK---KFFENEHFLKIGHNIKYDKLVLHRYGIS---MRGFEDIMLMSY 494
           G N   + +L+YL+   K F  +    +G N+ YD   L   GI    +R F DI +   
Sbjct: 81  GGNLPLEGVLAYLRAQAKVFTGD---LVGANLPYDLDFLAGDGIEFERVRYFRDIQIADP 137

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKE-ILKSRKSSIPIDKISDSQ------VQEHAIENSN 547
           ++     S+ + +IA++W  + + E +L++      ID   D        V ++A E++ 
Sbjct: 138 LICELHDSYSMQAIAERWGFHGKDEALLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTR 197

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           + L +      ++  + L  VY  L+  ++ +++ +   G++ID D L  +     +   
Sbjct: 198 LPLNILRRQEREIDEQDLWGVYN-LESKLLPILTGLRRRGVRIDCDRLDMIERWALEKET 256

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS----GAK-TKTGQWKTTAQDLEQINC 662
                +  ++G +        +GD+   ++  P+    G K  KT Q K    D E +  
Sbjct: 257 EALAQVRSITGHRI------AVGDVWKPEVIAPALEHIGIKLNKTSQGKPNI-DKELLGS 309

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH-TFYSL-----------ASTMT 710
            D+P+   +   R+++K+++T+A S+ +H+     R+H TF  L           A    
Sbjct: 310 IDHPVADLLERARKVNKLRTTFASSVRDHMV--NGRLHGTFNQLRRQKDDESDGTAGAAY 367

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH---IAKITPL 767
           GRL+S  PNLQ  P + +     R  ++    +   S DYSQ E R+  H   +AK    
Sbjct: 368 GRLSSEHPNLQQQPARDEFAMMWRAIYLPEEGQHWASNDYSQQEPRMAVHYACLAKDLIG 427

Query: 768 YQVFENSL------------DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           +Q + +++            D H+M+ A++ G+         R+ AK I   + YG+   
Sbjct: 428 HQAWLSAIEARDKYRNDPNTDNHQMM-ADMAGIK--------RKDAKEIYLGLSYGMGGA 478

Query: 816 RLATQLRIP-----------------------------RSEAAD-----YIKRYFHRFPG 841
           ++  +L +P                             R EAA       +  + H+ P 
Sbjct: 479 KMCRKLGLPTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEAAGPEGQALLDTFDHKVPF 538

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN-ERAAINAPIQGSAADIT 900
           I +  +  +   +  GY+ T+ GRR  +     PK    N +     +N  IQGS+AD T
Sbjct: 539 IKKLAKACEARAKAVGYITTLSGRRCRF-----PKDKDGNYDWTHKGLNRLIQGSSADQT 593

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-EEITTASQIIVHSMEKACLPKINLR 959
           + AM++  ++  D      +++Q+HDE+ F V + +E   A+ I+     + C P   L 
Sbjct: 594 KMAMVACAEAGLD------IIIQVHDEIAFSVHDMKEAAEAAHIM-----RTCTP---LE 639

Query: 960 VPLKVNIKVSNNW 972
           +P KV++++  +W
Sbjct: 640 LPSKVDVEIGQSW 652


>gi|261342227|ref|ZP_05970085.1| exodeoxyribonuclease IX [Enterobacter cancerogenus ATCC 35316]
 gi|288315562|gb|EFC54500.1| exodeoxyribonuclease IX [Enterobacter cancerogenus ATCC 35316]
          Length = 252

 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 3/219 (1%)

Query: 49  LQNSRKESIASHFAVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           L+   + S  +H   +FD  A    +R++  PDYKA R  +P+ L  ++P +R A +  G
Sbjct: 33  LEQLIRHSEPTHAVAVFDDEARNTGWRHQRLPDYKAGRAPMPDDLHAEMPAIRAAFEQRG 92

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +P     G EADD+ AT        G   TI+STDK   QL++PT  + D  ++  +D  
Sbjct: 93  VPCWGAYGNEADDLAATLAVKVASAGHQATIVSTDKGYCQLLTPTIRIRDYFQKRWLDAP 152

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            +  ++G+ P ++     L G S   +PG+ GIG K+AA LL ++ +LE I      + +
Sbjct: 153 FIASEFGVSPAQLPDYWGLAGISSSKVPGVAGIGPKSAAQLLTDFQHLEGIYARLDEVPE 212

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           K R++ +  + E A + R++  L+TD+ +   L+ L LE
Sbjct: 213 KWRKK-LEAHKEMAFICREIATLQTDLQLDGNLQQLRLE 250


>gi|315123484|ref|YP_004065490.1| exonuclease IX [Pseudoalteromonas sp. SM9913]
 gi|315017244|gb|ADT70581.1| exonuclease IX [Pseudoalteromonas sp. SM9913]
          Length = 257

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 135/263 (51%), Gaps = 14/263 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAI-AGFCNMLWKLLQNSRKESIASHFAVI 64
           HL L+D  + I R +      +   D   + A  A   +   KL+  +     A+H   +
Sbjct: 4   HLLLIDALNLIRRIYAVDANQTHHSDEHMLKACCARVAHACKKLITTTN----ATHAIAV 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    ++R   Y DYK +R  +P+ L   LP  + A +  GI   E    EADDIIAT 
Sbjct: 60  FDGDK-SWRYHFYKDYKHSRAPMPQTLKEALPHFKAAIEETGIVVFEPTNDEADDIIATL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            + A       TI+STDK  +  ++    +YD  K++++  +H+ +++G+   K++   A
Sbjct: 119 AHKAANNQINNTIVSTDKGFLPHLNEQIEVYDYFKKQQLTQQHIQERFGVAQHKLIDFWA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYAETAR 241
           L GD  ++IPG+ GIG K+A  L+ +Y  LE  L + S   R+ QKK  +++  +     
Sbjct: 179 LAGDKTNDIPGVKGIGVKSAQQLVNQYNTLEEALSDESLSARL-QKKLADDMDMFV---- 233

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +S++LV LRTD+ +   L+ L L
Sbjct: 234 ISKQLVSLRTDIHLGFSLKQLRL 256


>gi|217974146|ref|YP_002358897.1| exonuclease IX [Shewanella baltica OS223]
 gi|254799414|sp|B8EAT2|XNI_SHEB2 RecName: Full=Protein Xni
 gi|217499281|gb|ACK47474.1| 5'-3' exonuclease [Shewanella baltica OS223]
          Length = 262

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 132/256 (51%), Gaps = 11/256 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +          ++  C    KLL+  R     +H A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDETDMQS--LTERVSSACT---KLLRVHR----PTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YP+YK  R  +PE L   L  ++    A  I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPNYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL       +D   ++ +DI  + +K G+   + + L A
Sbjct: 112 AIKTAKAQGEAIIVSTDKGFSQLNHRQISQWDHFNQQYLDIAALEQKLGVERSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ + +L  +  + S +  K+ ++ + E  E ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNLGAKQAKK-LAEGKEMARLSY 230

Query: 245 KLVMLRTDVPITIPLE 260
           KL  L+TD+P+ I L+
Sbjct: 231 KLAQLQTDLPLNINLK 246


>gi|116670552|ref|YP_831485.1| 5'-3' exonuclease [Arthrobacter sp. FB24]
 gi|116610661|gb|ABK03385.1| 5'-3' exonuclease [Arthrobacter sp. FB24]
          Length = 312

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 29/238 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+D +S  +RAFY  P   R+ DG PVNA+ G  +M+ +L  +      A+H    
Sbjct: 3   HRLMLLDTASLYFRAFYGVPDTIRRADGTPVNAVRGLLDMIARLTTDYE----ATHLIAC 58

Query: 65  FD---YPAVTFRNEIYPDYKANR--------PKI---PEMLLPQLPLVRLATQAFGIPAI 110
           +D    P   +R ++ P YK++R        P I   P+ L  Q+P++R   +  GI  +
Sbjct: 59  WDDDWRP--QWRVDLIPSYKSHRVAEVVAGAPDIEVVPDALETQIPMIRRVLELAGIAVV 116

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI-- 165
                EADD++ TY   A + G  V +++ D+DL Q+VS       +Y     + +++  
Sbjct: 117 GATEHEADDVVGTY---ASQAGLPVDVVTGDRDLFQVVSDDRGVRVIYTARGMKNLEVVT 173

Query: 166 -EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
              ++ K+ + PE+      L GD+ D +PG+ GIG KTAA LL EYG L  +L  A+
Sbjct: 174 DAVIVGKYRVLPEQYADYAILRGDTSDGLPGVAGIGEKTAASLLGEYGTLAMLLEAAT 231


>gi|42560650|ref|NP_975101.1| DNA polymerase I, 5'-3' exonuclease [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492146|emb|CAE76743.1| DNA POLYMERASE I, 5'-3' exonuclease [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301321342|gb|ADK69985.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 304

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 11/219 (5%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L+DG   +++ +Y T    ++S+  DG+ +NAI  F   + K +Q+ R  S+     V
Sbjct: 9   ILLIDGYHLLHKGYYGTLKRTIVSKNKDGIVINAIYSFVANILKFVQSDRYHSVI----V 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+    +R E+Y +YKA R   P  L+PQL + R    +  I   E   +E DD+I +
Sbjct: 65  AFDFDENCWRKELYSEYKAKRKPTPIDLIPQLQIARDFLTSANISWYEKYNYEGDDVIGS 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEHVIKKWGIPPEKM 179
              IA K G+ V I++ DKD+ QLV+  T +        K + I  E V + +   P ++
Sbjct: 125 ICRIANKLGYDVCILTNDKDIYQLVNNKTSIITNISKKEKIKIIKSEQVYEHFLCQPNQV 184

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             ++A+ GD  DNI G+  I  K A  L+ +Y N+ENIL
Sbjct: 185 ADIKAILGDQSDNIKGVKYIKRKQAESLINKYENVENIL 223


>gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle]
          Length = 608

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 124/519 (23%), Positives = 233/519 (44%), Gaps = 58/519 (11%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  YD  V  R  G+ M       +D  ++++++D      G S H +  + ++++   
Sbjct: 95  HNAAYDLQVFERTLGVPMEAMWPKVKDTRILAHLIDPRGKDEGGSGHSLEDLTRRYIDSA 154

Query: 517 RKEILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKL---IVEKLLHVYERL 572
             + +K+  + +   +K +   V +  +   +   QL+  + P L   +++KL  + +  
Sbjct: 155 VADNVKTLMADLAKANKTTKVNVWKK-VPFEDPHYQLYSGMDPILAARLIQKLAPLVKVS 213

Query: 573 DKPMID-------VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
           D+ ++D       + S ME TG  +D +  +++S ++        E   +   EK N  S
Sbjct: 214 DE-LVDNEHKLAAICSYMERTGFLLDVEYTEELSLDLQVKESHYNEIALNYGCEKVN--S 270

Query: 626 PKQLGDILFT-----KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
             Q+ D+L +     K + PSG K K       ++ +E    G+      ++E ++  K 
Sbjct: 271 TDQVADVLESMGVRIKGRTPSG-KRKVDD-AVLSELVEHEKAGE--FATAVIEAKKAGKW 326

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           + T+ D      + +  R H   +     T R++      Q +P        IRR F++ 
Sbjct: 327 RKTWVDGFLKQRDSQN-RCHAAINPLRARTARMSITGIPAQTLPAGD---STIRRCFLAD 382

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
              ++ S DY   ELR+LA ++K   + Q F +  D+H M A   FG +I+K  P+ R++
Sbjct: 383 EGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDADLHLMTARAAFGEHIQKDDPE-RKY 441

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +NF  +YG     +A Q  +  + A   +  +   +P + +  ++ +    +NGY+ 
Sbjct: 442 AKVVNFGRVYGGGAKTVAEQTGLDMATAQKVVAGFDRAYPEVQKLSQRLQREAIRNGYIT 501

Query: 861 TIF-----GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           T F     GRR+  D    P+ +       +A+N  IQ S+ D+T RA++ +H    D  
Sbjct: 502 TPFIDGLGGRRLPVD----PQRAY------SALNYLIQSSSRDVTCRALLRLH----DAG 547

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
               + L IHDE++  VP E+    +  I   M +   P
Sbjct: 548 FTPYLRLPIHDEILASVPAEQAEWGANRIGELMAEQMGP 586


>gi|152971671|ref|YP_001336780.1| exonuclease IX [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206578924|ref|YP_002236839.1| exodeoxyribonuclease-9 [Klebsiella pneumoniae 342]
 gi|238896270|ref|YP_002921006.1| exonuclease IX [Klebsiella pneumoniae NTUH-K2044]
 gi|262041553|ref|ZP_06014750.1| exodeoxyribonuclease IX [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288933787|ref|YP_003437846.1| 5'-3' exonuclease, SAM-fold domain protein [Klebsiella variicola
           At-22]
 gi|290511133|ref|ZP_06550502.1| exonuclease IX [Klebsiella sp. 1_1_55]
 gi|166918965|sp|A6TD79|XNI_KLEP7 RecName: Full=Protein Xni
 gi|226733930|sp|B5XUZ0|XNI_KLEP3 RecName: Full=Protein Xni
 gi|150956520|gb|ABR78550.1| exonuclease IX [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206567982|gb|ACI09758.1| exodeoxyribonuclease-9 [Klebsiella pneumoniae 342]
 gi|238548588|dbj|BAH64939.1| exonuclease IX [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259041114|gb|EEW42188.1| exodeoxyribonuclease IX [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888516|gb|ADC56834.1| 5'-3' exonuclease, SAM-fold domain protein [Klebsiella variicola
           At-22]
 gi|289776126|gb|EFD84125.1| exonuclease IX [Klebsiella sp. 1_1_55]
          Length = 251

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 115/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD    A  +R++  P+YKA R  +PE L+ ++P +R A +  GI      
Sbjct: 40  SQPTHAVAVFDDEDRAHGWRHQRLPEYKAGRAPMPETLVAEMPALRAAFEQRGIRCWASP 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   +  ++G
Sbjct: 100 GSEADDLAATLAVKVAQAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAPFIASEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + PE++     L G S   +PG+ GIG K+AA LL E+ +LE +    + + +K R++ +
Sbjct: 160 VTPEQLADYWGLAGISSSKVPGVAGIGPKSAAQLLNEFQDLEGLYARLAEVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A   R++  L+TD+ +   L+ L L
Sbjct: 219 AAHQEMAFTCREVARLQTDLQLDGNLQQLRL 249


>gi|330003161|ref|ZP_08304540.1| 5'-3' exonuclease, SAM domain protein [Klebsiella sp. MS 92-3]
 gi|328537044|gb|EGF63328.1| 5'-3' exonuclease, SAM domain protein [Klebsiella sp. MS 92-3]
          Length = 251

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 115/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD    A  +R++  P+YKA R  +PE L+ ++P +R A +  GI      
Sbjct: 40  SQPTHAVAVFDDEDRAHGWRHQRLPEYKAGRAPMPETLVAEMPTLRAAFEQRGIRCWASP 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   +  ++G
Sbjct: 100 GSEADDLAATLAVKVAQAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAPFIASEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + PE++     L G S   +PG+ GIG K+AA LL E+ +LE +    + + +K R++ +
Sbjct: 160 VTPEQLADYWGLAGISSSKVPGVAGIGPKSAAQLLNEFQDLEGLYARLAEVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A   R++  L+TD+ +   L+ L L
Sbjct: 219 AAHQEMAFTCREVARLQTDLQLDGNLQQLRL 249


>gi|325973199|ref|YP_004250263.1| 5'-3' exonuclease, DNA polymerase I like protein [Mycoplasma suis
           str. Illinois]
 gi|323651801|gb|ADX97883.1| 5'-3' exonuclease, DNA polymerase I like protein [Mycoplasma suis
           str. Illinois]
          Length = 259

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 19/242 (7%)

Query: 41  FCNML------WKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ 94
           F N+L      W  L N       SH  +IFD    +FR E+ P+YKANR  +P  LL  
Sbjct: 20  FMNLLLLQVRKWTTLNN------YSHGVMIFDIDRKSFRTELLPEYKANRDPMPPELLSW 73

Query: 95  LPLVRLATQAFGIPAIEI-QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
           LP    A    G+  +   +G+EADD+  T +    +  F V I +TD+D  QLV     
Sbjct: 74  LPEAVSAVSETGLKVVYAPKGYEADDLAGTISKSLSEYDFKVDIFTTDRDFFQLVDHLIS 133

Query: 154 LYDTVKEEKIDIEHVIK----KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           +Y   K  +I++ + +       G+ P ++  L+AL+GD+ DN  GIP IG KTA  L+Q
Sbjct: 134 VYRVGKSFQIEVNNHLNFSQLNEGLLPSQIPLLKALSGDASDNYSGIPKIGPKTATKLIQ 193

Query: 210 EYGNLENILINA-SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
           ++   ENI +++   I+++K R++ILE  E  +L  K+  ++TD+     +   +L    
Sbjct: 194 QFKT-ENIFLSSLEEIQEEKLRQSILENEEQIKLFLKISRIKTDLDYKFEISDFLLGKPT 252

Query: 269 GP 270
            P
Sbjct: 253 TP 254


>gi|304409481|ref|ZP_07391101.1| 5'-3' exonuclease, SAM-fold domain [Shewanella baltica OS183]
 gi|307303839|ref|ZP_07583592.1| 5'-3' exonuclease, SAM-fold domain [Shewanella baltica BA175]
 gi|304351999|gb|EFM16397.1| 5'-3' exonuclease, SAM-fold domain [Shewanella baltica OS183]
 gi|306912737|gb|EFN43160.1| 5'-3' exonuclease, SAM-fold domain [Shewanella baltica BA175]
          Length = 262

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 131/256 (51%), Gaps = 11/256 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +          ++  C    KLL+  R     +H A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDETDMQS--LTERVSSACT---KLLRVHR----PTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++    A  I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPDYKKGRKPMPEPLAQGLDALQDHLTAMHIGSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL       +D   ++ +DI  + +K G+   + + L A
Sbjct: 112 AIKTAKAQGEAIIVSTDKGFSQLNHRQISQWDHFNQQYLDIAALEQKLGVERSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ + +L  +  + S +  K+ ++ +    E ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNLGAKQAKK-LAGGKEMARLSY 230

Query: 245 KLVMLRTDVPITIPLE 260
           KL  L+TD+P+ I L+
Sbjct: 231 KLAQLQTDLPLNINLK 246


>gi|218710358|ref|YP_002417979.1| exonuclease IX [Vibrio splendidus LGP32]
 gi|254799415|sp|B7VJ90|XNI_VIBSL RecName: Full=Protein Xni
 gi|218323377|emb|CAV19554.1| Probable exodeoxyribonuclease IX [Vibrio splendidus LGP32]
          Length = 257

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 4/213 (1%)

Query: 55  ESIASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           ES  +H   +FD+      +R E+ P YK NR  +PE L+  L  ++ A    GI ++  
Sbjct: 44  ESKPTHIIAVFDHHLQDRGWRAEVLPAYKQNRKPMPEPLMKGLDAIQQAWWELGIDSLLS 103

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
            G EADD++AT        G  VTIISTDK   QL+SPT  + D  +   +D   +  ++
Sbjct: 104 DGDEADDLVATLAKKVADHGETVTIISTDKGYCQLLSPTLQIRDYFQHRWLDKPFIEAEF 163

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ PE++     LTG S   +PGIPGIG K A  +L  Y ++E   +       KK R+ 
Sbjct: 164 GVKPEQLADYWGLTGVSSSQVPGIPGIGPKAAKEILTTYPDIETAFLAEDL--PKKYRKK 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
             E+ E+AR+ + +  L+TD+ +   L+ +  E
Sbjct: 222 FDEHIESARVCKLVSALKTDIDLGFNLQDIRYE 254


>gi|212636417|ref|YP_002312942.1| exonuclease IX [Shewanella piezotolerans WP3]
 gi|226733939|sp|B8CS65|XNI_SHEPW RecName: Full=Protein Xni
 gi|212557901|gb|ACJ30355.1| 5'-3' exonuclease [Shewanella piezotolerans WP3]
          Length = 255

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 131/272 (48%), Gaps = 27/272 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATP-------LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           N   ++DG + + R   A P       L  R H         G C  L K  Q       
Sbjct: 2   NKFLILDGMNLVRRIHAAQPNEADISGLKERVH---------GACKKLLKFHQ------- 45

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH A+++D  A+++R  +Y DYK  R  +PE L   L  ++       I ++E    EA
Sbjct: 46  PSHVAIVWDGNAISWRKALYEDYKKGRKPMPEALSNGLGDIKSYLAEHHIASLEADS-EA 104

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IAT        G    I+STDK   QL  P    +D   +  + +E + +K G+  +
Sbjct: 105 DDVIATLATKLVSIGGEAIIVSTDKGFCQLKHPNIKQWDHFNQTYMTVEAMEQKLGVEHK 164

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + +   AL GDS + IPG+PGIG K+A  LL+ + +L NI  +  ++  K+ ++  LE  
Sbjct: 165 QFIDYLALAGDSGNKIPGVPGIGPKSAVELLKIFRSLANIYSSIEQVGSKQAKK--LEAG 222

Query: 238 E-TARLSRKLVMLRTDVPITIPLEHLILEDCN 268
           +  ARLS KLV L+ D+P+   L+   L   N
Sbjct: 223 KHLARLSYKLVQLQLDMPLNANLKQFRLPKAN 254


>gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon]
 gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon]
          Length = 609

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 238/516 (46%), Gaps = 65/516 (12%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++   
Sbjct: 95  HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPV 154

Query: 517 RKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             E +K+      +K     DKI       D   + +A    + IL   LL +   +V +
Sbjct: 155 TAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYA--GMDTILVSRLLGKVAPLVPE 212

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI---SKNLLSLEENIYDLSGEKF 621
             H     +  + +V+S +E TG  +D D  +++SA++   S++  ++    Y +     
Sbjct: 213 SSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVARYAYGVD---- 268

Query: 622 NLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +++S ++L D L  T +K     +T TG+ +  A+ LE +    N + K  +E ++    
Sbjct: 269 SVNSTEKLADGLERTGVKIK--GRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSW 326

Query: 681 KSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           + T+   + N I +R    RVH   +     TGR+++  P+ QN+P    +   +RR F+
Sbjct: 327 EKTW---VRNFIERRDANDRVHPGINPLQARTGRMSTSNPSAQNLPSGDWM---VRRCFL 380

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P + + S DY   ELR+LA ++    + + F+   D+H+ V A+  GV+        R
Sbjct: 381 ADPGQIIASVDYRAQELRVLAALSGDQTMLRAFKEESDLHQ-VTADAAGVD--------R 431

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           +  K  NF + YG    +LAT   I   EA   ++ +   +PG+    ++ +      G+
Sbjct: 432 KIGKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYPGVDTLNKRMQQEAGSAGF 491

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           + T  GRR+  D    P  +       +A+N  IQ S+ D+T  A++ +H++        
Sbjct: 492 ITTPTGRRLPVD----PDRAY------SALNYLIQSSSRDVTGAAVLRLHEA----GFTP 537

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
            M L +HDE++  +PE +   A + +   ME+   P
Sbjct: 538 NMRLVVHDEVLLSLPEADAEAAVKEVGQIMEQRIGP 573


>gi|260876450|ref|ZP_05888805.1| 5'-3' exonuclease [Vibrio parahaemolyticus AN-5034]
 gi|308091625|gb|EFO41320.1| 5'-3' exonuclease [Vibrio parahaemolyticus AN-5034]
          Length = 241

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 13/249 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEAKPTHIIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E     AS     K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFEDIEAAY--ASDELAPKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTD 252
           +++  L+ D
Sbjct: 233 KRVAALKCD 241


>gi|296139879|ref|YP_003647122.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Tsukamurella paurometabola DSM 20162]
 gi|296028013|gb|ADG78783.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Tsukamurella paurometabola DSM 20162]
          Length = 320

 Score =  117 bits (294), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 27/232 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +   +RA+YA P   +  DG  VNA+ GF +M  +L+   R   + +   +  D
Sbjct: 14  LMLLDSAGLWFRAYYAIPDKVKAADGRSVNALRGFLDMTSQLIATHRPGRLVA--CLDLD 71

Query: 67  Y-PAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
           + PA  FR ++ P YK +R          ++P+ L PQ+ ++     A GI     +G E
Sbjct: 72  WRPA--FRVDLLPTYKTHRVAEDAEDGAEEVPDTLAPQVDMILEVLDAVGIATAGAEGLE 129

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHVI 169
           ADD++ T    A+++   V ++S D+DL+Q+      P  CLY      K E      V 
Sbjct: 130 ADDVLGTLA--AQEQVDPVIVVSGDRDLLQVADDTPPPVKCLYIGRGIAKAEMFGPAEVA 187

Query: 170 KKWGIPP----EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
           +K+G+P     E    L  L GD  D +PG+PGIG KTA+ LL +YG+L  I
Sbjct: 188 EKYGLPADRAGEAYAELALLRGDPSDGLPGVPGIGEKTASKLLLQYGSLAAI 239


>gi|296165171|ref|ZP_06847719.1| 5'-3' exonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899479|gb|EFG78937.1| 5'-3' exonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 306

 Score =  117 bits (294), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 140/306 (45%), Gaps = 35/306 (11%)

Query: 17  YRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP-AVTFRNE 75
           +R+++  P      DG PVNA+ GF + L  ++   R     S   V  D      FR +
Sbjct: 3   FRSYFGVPSSITAPDGRPVNAVRGFIDSLAVVINQQR----PSRLVVCLDLDWRPQFRVD 58

Query: 76  IYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + P YKA+R             ++P+ L PQ+ ++     AFGIP    +GFEADD++ T
Sbjct: 59  LVPSYKAHRVAEAEPAGEPDVEEVPDDLTPQIDMIMELLDAFGIPTAGAEGFEADDVLGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHVIKKWGIPP 176
               A +    V ++S D+DL+Q+V+    P   LY      K        V   +G+P 
Sbjct: 119 LA--ARERRDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVADHYGVPQ 176

Query: 177 EKMVCLQA----LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR--- 229
            +     A    + GD  D +PG+PG+G KTAA LL ++G+LE+IL  A   K K     
Sbjct: 177 HRAGPAYAEFALMRGDPSDGLPGVPGVGEKTAAALLAQHGSLEHILAAARDPKSKMAKGL 236

Query: 230 RENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLKALEFTKLINR 287
           R  +L   +    + ++V + TD P+++  P + L L   +  R       L     I R
Sbjct: 237 RSKLLGATDYIEAAGQVVRVATDAPVSLSTPTDALPLAAGDPQRTAKLATKLGVGSSIAR 296

Query: 288 VATTYD 293
           +    D
Sbjct: 297 LQKALD 302


>gi|86146929|ref|ZP_01065248.1| exonuclease IX [Vibrio sp. MED222]
 gi|85835381|gb|EAQ53520.1| exonuclease IX [Vibrio sp. MED222]
          Length = 257

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 4/213 (1%)

Query: 55  ESIASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           ES  +H   +FD+      +R E+ P YK NR  +PE L+  L  ++ A    GI ++  
Sbjct: 44  ESKPTHIIAVFDHHLQDRGWRAEVLPAYKQNRKPMPEPLMKGLDAIQQAWWELGIDSLLS 103

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
            G EADD++AT        G  VTIISTDK   QL+SPT  + D  +   +D   +  ++
Sbjct: 104 DGDEADDLVATLAKKVADHGETVTIISTDKGYCQLLSPTLQIRDYFQHRWLDKPFIEAEF 163

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ PE++     LTG S   +PGIPGIG K A  +L  Y ++E   +       KK R+ 
Sbjct: 164 GVKPEQLADYWGLTGVSSSQVPGIPGIGPKAAKEILTTYPDIETAFLAEDL--PKKYRKK 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
             E+ E+AR+ + +  L+TD+ +   L+ +  E
Sbjct: 222 FDEHIESARVCKLVSALKTDIDLGFNLQDIRYE 254


>gi|156973498|ref|YP_001444405.1| exonuclease IX [Vibrio harveyi ATCC BAA-1116]
 gi|166918970|sp|A7MYB8|XNI_VIBHB RecName: Full=Protein Xni
 gi|156525092|gb|ABU70178.1| hypothetical protein VIBHAR_01189 [Vibrio harveyi ATCC BAA-1116]
          Length = 260

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 131/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTGRTLTRILSEAQPTHIIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLIKGLDALQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PG+G K A  +L ++ ++E     AS     K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGVGPKAAKEILTQFEDIEAAY--ASEELVPKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+ D+ +   L+ +
Sbjct: 233 KRVAALKCDIDLGFNLQDI 251


>gi|226359985|ref|YP_002777763.1| 5'-3' exonuclease [Rhodococcus opacus B4]
 gi|226238470|dbj|BAH48818.1| putative 5'-3' exonuclease [Rhodococcus opacus B4]
          Length = 321

 Score =  117 bits (294), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 120/231 (51%), Gaps = 31/231 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RA+YA P      DG  VNA+ GF +M+  L+   +     S  AV  D
Sbjct: 8   LLLLDGASLWFRAYYALPDSITSPDGRSVNAVRGFTDMVAALITKHQ----PSRLAVCLD 63

Query: 67  Y---PAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               PA  FR E  P YKA+R          ++P+ L PQ+P++     A GI     +G
Sbjct: 64  LDWRPA--FRVEAVPTYKAHRVAEDTGGAEEEVPDTLSPQVPMILDVLAATGIATAGAEG 121

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEH 167
            EADD++ T      ++  AV +++ D+DL+Q+V+    P   LY      K E +  E 
Sbjct: 122 LEADDVLGTLAATETRD--AVIVVTGDRDLLQVVTDDPVPVRVLYVVRGLAKAELLGPEE 179

Query: 168 VIKKWGIPP----EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           V  K+G+P     E    L  L GDS D +PG+ GIG KTA+ L+ +YG+L
Sbjct: 180 VAAKYGVPADRAGEAYAELALLRGDSSDGLPGVKGIGEKTASSLIMQYGSL 230


>gi|162135103|ref|YP_001595844.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513950|emb|CAO77776.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 664

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 142/613 (23%), Positives = 268/613 (43%), Gaps = 122/613 (19%)

Query: 441 GKNTLTKEILSYLK---KFFENEHFLKIGHNIKYDKLVLHRYGIS---MRGFEDIMLMSY 494
           G N   + +L+YL+   K F  +    +G N+ YD   L   GI    +R F DI +   
Sbjct: 81  GGNLPLEGVLAYLRAQAKVFTGD---LVGANLPYDLDFLAGDGIEFERVRYFRDIQIADP 137

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKE-ILKSRKSSIPIDKISDSQ------VQEHAIENSN 547
           ++     S+ + +IA++W  Y + E +L++      ID   D        V ++A E++ 
Sbjct: 138 LICELHDSYSMQAIAERWGFYGKDEALLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTR 197

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           + L +      ++  + L  VY  L+  ++ +++++   G++ID D L  +     +   
Sbjct: 198 LPLNILRRQEREIDEQDLWGVYN-LESKLLPILTRLRRRGVRIDCDRLDMIERWALEKET 256

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS----GAK-TKTGQWKTTAQDLEQINC 662
                +  ++G +        +GD+   ++  P+    G K  KT Q K +  D E +  
Sbjct: 257 EALAQVRSITGHRI------AVGDVWKPEVIAPALEHIGIKLNKTSQGKPSI-DKELLGS 309

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH-TFYSL-----------ASTMT 710
            D+P+   +   R+++K+++T+A S+ +H+     R+H TF  L           A    
Sbjct: 310 IDHPVAGLLERARKVNKLRTTFASSVRDHMV--NGRLHGTFNQLRRQKDDESDGTAGAAY 367

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH---IAKITPL 767
           GRL+S  PNLQ  P + +     R  ++    +   S DYSQ E R+  H   +AK    
Sbjct: 368 GRLSSEHPNLQQQPARDEFAMMWRSIYLPEEGQHWASNDYSQQEPRMAVHYACLAKDLIG 427

Query: 768 YQVFENSL------------DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           ++ + +++            D H+M+ A++ G+         R+ AK I   + YG+   
Sbjct: 428 HKAWLSAIEARDKYRNDPNTDNHQMM-ADMAGIK--------RKDAKEIYLGLSYGMGGA 478

Query: 816 RLATQLRIP-----------------------------RSEAAD-----YIKRYFHRFPG 841
           ++  +L +P                             R EAA       +  +  + P 
Sbjct: 479 KMCRKLGLPTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEAAGPEGQALLDTFDQKVPF 538

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN-ERAAINAPIQGSAADIT 900
           I +  +  +   +  GY+ T+ GRR  +     PK    N +     +N  IQGS+AD T
Sbjct: 539 IKKLAKACEARAKAVGYITTLSGRRCRF-----PKDKDGNYDWTHKGLNRLIQGSSADQT 593

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-EEITTASQIIVHSMEKACLPKINLR 959
           + AM++  ++  D      +++Q+HDE+ F V + +E   A+ I+     + C P   L 
Sbjct: 594 KMAMVACAEAGLD------IIIQVHDEIAFSVHDMKEAAEAAHIM-----RTCTP---LE 639

Query: 960 VPLKVNIKVSNNW 972
           +P KV++++  +W
Sbjct: 640 LPSKVDVEIGQSW 652


>gi|294155790|ref|YP_003560174.1| probable 5'-3' exodeoxyribonuclease [Mycoplasma crocodyli MP145]
 gi|291599989|gb|ADE19485.1| probable 5'-3' exodeoxyribonuclease [Mycoplasma crocodyli MP145]
          Length = 293

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 135/262 (51%), Gaps = 18/262 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+KEN L ++DG+  ++++FYAT       +   + G+  N    F   L  LL+    E
Sbjct: 1   MKKENFL-IIDGNLLMFQSFYATYNPYNSYVMTSNKGVTTNGTFQFFTTLINLLE----E 55

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               +  + FD    T R+E YPDYKA R K PE++  Q   V+       I   EI G 
Sbjct: 56  LKPKYLFIAFDAKGKTKRHEEYPDYKAGRTKAPEIIYEQFESVKKLLTLLKINHNEIVGA 115

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKIDIEHVIKK 171
           EADD+IAT + I E   +   I S D+DL+QLV    + +Y   +T K   ++ ++    
Sbjct: 116 EADDLIATVSKINEVSKY---IYSKDQDLLQLVKEDISIIYKNPETKKFATVNKDNFYDI 172

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +   P ++   +A+ GD+ DN+PG+ GIG   A  LL+++G++ N+  N  ++   K +E
Sbjct: 173 YNFYPNQIPDYKAINGDTSDNLPGVKGIGKIGAIKLLEQFGSIHNVYDNIDKLTL-KMQE 231

Query: 232 NILEYAETARLSRKLVMLRTDV 253
            +L   E + L  KL  L  +V
Sbjct: 232 KLLNSKEMSLLCYKLACLNNNV 253


>gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches]
 gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches]
          Length = 608

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 123/518 (23%), Positives = 231/518 (44%), Gaps = 56/518 (10%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  YD  V  R  G+ M       +D  ++++++D      G S H +  + ++++   
Sbjct: 95  HNAAYDLQVFERTLGVPMETMWPKVKDTRILAHLIDPRGKDEGGSGHSLEDLTRRYIDSA 154

Query: 517 RKEILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKL---IVEKLLHVYERL 572
             + +K+  + +   +K +   V +  +   +   QL+  + P L   +++KL  + +  
Sbjct: 155 VADNVKTLMADLAKANKTTKVNVWKK-VPFEDPHYQLYSGMDPILAARLIQKLAPLVKVS 213

Query: 573 DK------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           D+       +  + S ME TG  +D +  +++S ++        E   +   EK N  S 
Sbjct: 214 DELVENEHKLAAICSYMERTGFLLDVEYTEELSLDLQVKESHYNEIALNYGCEKVN--ST 271

Query: 627 KQLGDILFT-----KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
            Q+ D+L +     K + PSG K K       ++ +E    G+      ++E ++  K +
Sbjct: 272 DQVADVLESMGVRIKGRTPSG-KRKVDD-AVLSELVEHEKAGE--FATAVIEAKKAGKWR 327

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            T+ D      + +  R H   +     T R++      Q +P        IRR F++  
Sbjct: 328 KTWVDGFLKQRDSQN-RCHAAINPLRARTARMSITGIPAQTLPAGD---STIRRCFLADE 383

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             ++ S DY   ELR+LA ++K   + Q F +  D+H M A   FG +I+K  P+ R++A
Sbjct: 384 GHRIASVDYQAQELRVLAALSKDQRMIQAFLDDADLHLMTARAAFGEHIQKDDPE-RKYA 442

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF  +YG     +A Q  +  + A   +  +   +P + +  ++ +    +NGY+ T
Sbjct: 443 KVVNFGRVYGGGAKTVAEQTGLDMATAQKVVAGFDRAYPEVQKLSQRLQREAIRNGYITT 502

Query: 862 IF-----GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
            F     GRR+  D    P+ +       +A+N  IQ S+ D+T RA++ +H    D   
Sbjct: 503 PFIDGLGGRRLPVD----PQRAY------SALNYLIQSSSRDVTCRALLRLH----DAGF 548

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
              + L IHDE++  VP E+    +  I   M +   P
Sbjct: 549 TPYLRLPIHDEILASVPAEQAEWGANRIGELMAEQMGP 586


>gi|145594788|ref|YP_001159085.1| 5'-3' exonuclease [Salinispora tropica CNB-440]
 gi|145304125|gb|ABP54707.1| 5'-3' exonuclease [Salinispora tropica CNB-440]
          Length = 315

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 19/225 (8%)

Query: 7   LFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVD  S  +RA++  P   +   DG PVNA+ GF +ML  L++  R + +    A+  
Sbjct: 15  LMLVDAPSLYFRAYFGIPESAAVGPDGQPVNAVRGFLDMLASLIRTRRPDRMVC--AMDH 72

Query: 66  DYPAVTFRNEIYPDYKANR--PK----IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           D+    +R  + P YKA+R  P+    +P+ L PQ+PL+     A GI  +   G+EADD
Sbjct: 73  DWRP-EWRVALLPSYKAHRVAPEGGEVVPDTLSPQVPLILDVLDALGITTVGATGYEADD 131

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLY---DTVKEEKIDIEHVIKKWG 173
           ++ T   ++  +   V ++S D+DL QLV        LY      K    D   V  ++G
Sbjct: 132 VLGT---LSVTQPGPVEVVSGDRDLFQLVDDARGVRLLYVGRGVAKLADCDDAAVQARYG 188

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           +P  +     AL GD  D +PG+PG+G KTAA L+  +G++  +L
Sbjct: 189 VPAARYADFAALRGDPSDGLPGVPGVGEKTAARLVDRHGDIAGVL 233


>gi|148979790|ref|ZP_01815697.1| exonuclease IX [Vibrionales bacterium SWAT-3]
 gi|145961584|gb|EDK26884.1| exonuclease IX [Vibrionales bacterium SWAT-3]
          Length = 257

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 113/213 (53%), Gaps = 4/213 (1%)

Query: 55  ESIASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           ES  +H   +FD+      +R E+ P YK NR  +PE L+  L  ++ A    GI ++  
Sbjct: 44  ESKPTHIIAVFDHHLQERGWRAEVLPAYKQNRKPMPEPLMQGLDAIQQAWWELGIDSLLS 103

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
            G EADD++AT        G  VTIISTDK   QL+SPT  + D  +   +D   +  ++
Sbjct: 104 DGDEADDLVATLAKKVADHGETVTIISTDKGYCQLLSPTLQIRDYFQHRWLDKPFIEAEF 163

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P+++     LTG S   +PGIPG+G K A  +L  Y ++E      +    KK R+ 
Sbjct: 164 GVKPDQLADYWGLTGVSSSQVPGIPGVGPKAAKEILTTYPDIETAF--QAEDLPKKYRKK 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
             E+ E+AR+ +++  L+TD+ +   L+ +  E
Sbjct: 222 FDEHIESARVCKQVSALKTDIDLGFNLQDIRYE 254


>gi|269962334|ref|ZP_06176684.1| exodeoxyribonuclease IX [Vibrio harveyi 1DA3]
 gi|269832830|gb|EEZ86939.1| exodeoxyribonuclease IX [Vibrio harveyi 1DA3]
          Length = 260

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTGRTLTRILSEAQPTHIIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHSEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PGIPG+G K A  +L ++ ++E     AS     K R+   E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGIPGVGPKAAKEILTQFEDIEAAY--ASEELVPKYRKKFDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +K+  L+ D+ +   L+ +
Sbjct: 233 KKVAALKCDIELGFNLQDI 251


>gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2]
 gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2]
          Length = 608

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 236/512 (46%), Gaps = 65/512 (12%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++   
Sbjct: 95  HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPA 154

Query: 517 RKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             E +K+      +K     DKI       D   + +A    + IL   LL +   +V +
Sbjct: 155 TAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYA--GMDTILVSRLLGKVAPLVPE 212

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI---SKNLLSLEENIYDLSGEKF 621
             H     +  + +V+S +E TG  +D D  +++SA++   +++  ++    Y +     
Sbjct: 213 SSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYTAVARYAYGVD---- 268

Query: 622 NLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +++S ++L D L  T +K     +T TG+ +  A+ LE +    N + K  +E ++    
Sbjct: 269 SVNSTEKLADGLERTGVKIK--GRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSW 326

Query: 681 KSTYADSLPNHINKRT--QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           + T+   + N I +R    RVH   +     T R+++  P+ QN+P    +   +RR F+
Sbjct: 327 EKTW---VRNFIERRDADDRVHPGINPLQARTARMSTTSPSAQNLPANDWM---VRRCFL 380

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P + ++S DY   ELR+LA +A    + + FE   D+H+ V A+  G++        R
Sbjct: 381 ADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQ-VTADAAGMD--------R 431

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           +  K  NF  +YG    +LAT   I   EA   +  +   +PG+ +  +  +      GY
Sbjct: 432 KVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTDLSKSLQREAANLGY 491

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V T  GRR+  D    P          AA+N  +Q ++ D+T  A++ +H++     +  
Sbjct: 492 VITPTGRRLPVD----PDRGY------AALNYMVQSTSRDVTASAVLRLHEA----GMTP 537

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            + L IHDE++  VPE E    ++ I   ME+
Sbjct: 538 MIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQ 569


>gi|117921327|ref|YP_870519.1| exonuclease IX [Shewanella sp. ANA-3]
 gi|156630386|sp|A0KZ94|XNI_SHESA RecName: Full=Protein Xni
 gi|117613659|gb|ABK49113.1| 5'-3' exonuclease [Shewanella sp. ANA-3]
          Length = 260

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 133/266 (50%), Gaps = 14/266 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P      D L    ++  C  L ++          +H  ++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPD-ENDMDSL-TERVSVACTKLLRIHH-------PTHVTIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   LP ++   ++  I +I     EADD+IAT 
Sbjct: 53  WDGDEMSWRKQLYPDYKKGRKPMPEPLAAGLPALQEHLKSVQIQSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL  P    +D   ++ ++I  + +K G+   + + L A
Sbjct: 112 AMKTAKAQGEAVIVSTDKGFSQLNHPRISQWDHFNQQYLNITELEQKLGVDRSQFLDLLA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ +  L  +  +   +  K+ ++ + E  + ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLRTFRTLAALFSSLPNLGAKQAKK-LAEGRDMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGP 270
           KL  L+ D+P+ I L+       NGP
Sbjct: 231 KLAQLQIDLPLNINLKDF---RVNGP 253


>gi|86740972|ref|YP_481372.1| 5'-3' exonuclease [Frankia sp. CcI3]
 gi|86567834|gb|ABD11643.1| 5'-3' exonuclease [Frankia sp. CcI3]
          Length = 327

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 111/228 (48%), Gaps = 24/228 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVD  S  +R+F+  P   R  DG PVNA+ G  ++L + +   R + + + F  
Sbjct: 17  DGRLMLVDTPSLYFRSFFGVPRSVRAPDGTPVNAVRGLLDVLARQIGEVRPKRVVACFDA 76

Query: 64  IFDYPAVTFRNEIYPDYKANR---------------PKIPEMLLPQLPLVRLATQAFGIP 108
            +  PA  FR  +   YKA+R                ++   LL QLP++     AFGI 
Sbjct: 77  DW-RPA--FRVALLASYKAHRVADVGAGEAGGGGQVERVDGDLLAQLPIIDEVLDAFGIA 133

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---YDTVKEEKIDI 165
             E  GFEADD+IAT   +A +    V I++ D+DL QLV     +   Y   K   +D 
Sbjct: 134 RAEAAGFEADDVIAT---LATRHRGEVDILTGDRDLFQLVDDAAGVRVRYAVEKFAVVDE 190

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             V  ++G+P         L GD  D +PG+ GIG KTAA LL  +G+
Sbjct: 191 AAVTARYGVPGRAYADFAVLRGDPSDGLPGVAGIGAKTAAALLTRFGS 238


>gi|330445129|ref|ZP_08308781.1| 5'-3' exonuclease, C-terminal SAM fold family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489320|dbj|GAA03278.1| 5'-3' exonuclease, C-terminal SAM fold family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 258

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 130/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P    K D +P  A    C  L K+++ S+     +H   +F
Sbjct: 4   HLVVIDALNLIRRVHAARP---GKPD-VPATA-ETCCRALSKIIKISQP----THIVAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P YK  R  +P+ L+  + +++ A    GI ++   G EADD++AT
Sbjct: 55  DHHGDDRGWRAEILPHYKEGRKPMPDELMTGMDIIQDAFMNIGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+ PT  + D  +E  +D   + K++G+ P+K+    
Sbjct: 115 LALKVASRGEQVTIISTDKGYCQLLQPTLRIRDYFQERWLDSAFIEKEYGVAPDKLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPGI GIG K A  LLQ Y NLE IL  A+     K ++ I    E A  S
Sbjct: 175 GLAGISSSKIPGITGIGPKAAVELLQLYPNLEAIL--AADDLPAKWKKKIDGNHEIALAS 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +    L+TD+ +   L+ +
Sbjct: 233 KAASSLKTDLALGFNLQDI 251


>gi|253687326|ref|YP_003016516.1| 5'-3' exonuclease [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259710448|sp|C6DAH2|XNI_PECCP RecName: Full=Protein Xni
 gi|251753904|gb|ACT11980.1| 5'-3' exonuclease [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 260

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 139/263 (52%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             I    + L +L+QNS+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CITACQHALHQLIQNSQ----PTHAVA 47

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R+++ PDYKA R  +P+ L  +LP ++ A  A G+ +    G EADD+ 
Sbjct: 48  VFDDEDRDTSWRHQLLPDYKAGRTPMPDNLKQELPQIKAAFAAAGVASWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL++P   + D  ++  +D+  V +++G+ P+++  
Sbjct: 108 ATLATKLSSAGHQATIVSTDKGYCQLLAPHIQIRDYFQKRWLDLPFVEQEFGVSPQQLTD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG K+AA LLQ+ G+LE +      + +K R++ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGPKSAAQLLQQAGSLEALYQQLDGVPEKWRKK-LEQHKEMAL 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +SR++  LRTD+ +   L+ L L
Sbjct: 227 VSRQIATLRTDLTLNGNLQQLRL 249


>gi|298241292|ref|ZP_06965099.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Ktedonobacter
           racemifer DSM 44963]
 gi|297554346|gb|EFH88210.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Ktedonobacter
           racemifer DSM 44963]
          Length = 291

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 91/267 (34%), Positives = 136/267 (50%), Gaps = 20/267 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           ++LVDG+  ++R+ +  P   RK  DG  V A       L + L         +H A  F
Sbjct: 3   IYLVDGTYELFRSHFGAP--PRKAPDGREVGATL----GLLRSLLMLLTTPGITHVACAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   +FRN+ YP YK     +   L+ Q PL   A  A G+    +  FEADD +++ T
Sbjct: 57  DHVIESFRNDQYPGYKTG-AGVDSNLIAQFPLAEEAVSALGLVVWSMVEFEADDALSSAT 115

Query: 126 YIAEKEGFA--VTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              + E     + I S DKDL QLVS +  + +D  ++  ID   V++K+G+ P+ +   
Sbjct: 116 ARFKNEAGVEQIVICSPDKDLAQLVSGSRIVGWDRRRDILIDEAGVVEKFGVRPQSIPDW 175

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-------INASRIKQKKRRENILE 235
             L GD+ D  PGIPG G K+AA +L +Y +LE I        ++ASR    +  E++ +
Sbjct: 176 LGLVGDAADGFPGIPGWGEKSAAAVLAKYEHLEAIPADPQTWGLSASR--AARLAESLAQ 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL 262
           +   A L RKL MLR DVP+   L  L
Sbjct: 234 HWAEALLFRKLAMLREDVPLKETLADL 260


>gi|289644683|ref|ZP_06476745.1| 5'-3' exonuclease [Frankia symbiont of Datisca glomerata]
 gi|289505500|gb|EFD26537.1| 5'-3' exonuclease [Frankia symbiont of Datisca glomerata]
          Length = 324

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 108/228 (47%), Gaps = 24/228 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+D  S  +RA+Y  P   R   G PVNA+ G  + L + +   R   + + F   
Sbjct: 18  DRLMLLDTPSLYFRAYYGVPRSVRAGGGTPVNAVRGLLDTLTRQIAEIRPTRLVACFDA- 76

Query: 65  FDYPAVTFRNEIYPDYKANR---------------PKIPEMLLPQLPLVRLATQAFGIPA 109
            D+    FR  +   YKA+R                 +P  L  QLP++     A GIP 
Sbjct: 77  -DWRP-RFRVALLASYKAHRVAAGGTGGAEGAGWIEDVPAELTAQLPIIDAVLDAVGIPR 134

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIE 166
           +   G+EADD+I T   +A +    V +++ D+DL QLV    P    Y   +   ID  
Sbjct: 135 VSAAGYEADDVIGT---LAARGRAEVDVLTGDRDLFQLVDDSWPVRVRYAVERFAVIDEA 191

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            V  ++GIP         L GD  D +PG+PGIG KTAA LL+ +G+L
Sbjct: 192 AVTSRFGIPGRAYADFAVLRGDPSDGLPGVPGIGVKTAAALLRTFGSL 239


>gi|284008530|emb|CBA75061.1| exonuclease IX [Arsenophonus nasoniae]
          Length = 251

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 56  SIASHFAVIFDYP---AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           ++ +H   IFD        +R ++ P YKA R  +P+ L  ++  + +A +A G+     
Sbjct: 39  TLPTHAVAIFDSKEQLTNNWRQQLLPQYKAGRQAMPDDLYQEINNLEIAFKAQGLACWHA 98

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
              EADD+ AT        G+ VTIISTDK   QL+S +  + D  ++  +D+  V K++
Sbjct: 99  IENEADDLAATLAIKVATAGYRVTIISTDKGYCQLLSSSIYIRDYFQKRWLDLSFVNKEF 158

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ PE++     LTG +   IPGI GIG KTAA LLQ+Y  LE I  N + I +K R+  
Sbjct: 159 GVKPEQLQDYWGLTGINSSKIPGITGIGPKTAATLLQQYPTLEAIFANINSIPEKWRKR- 217

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHL 262
           I    + A +SR++  L+TD+ +   L+ L
Sbjct: 218 IEPGQKIAFISRQVASLKTDLQLNGNLQQL 247


>gi|260773293|ref|ZP_05882209.1| probable exodeoxyribonuclease IX [Vibrio metschnikovii CIP 69.14]
 gi|260612432|gb|EEX37635.1| probable exodeoxyribonuclease IX [Vibrio metschnikovii CIP 69.14]
          Length = 257

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 13/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P  S          IA   N   + LQ    ES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDESD---------IARTANTTCRTLQRIINESAPTHMIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK  R  +P  L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHTLQDRGWRAELLPSYKQGRKPMPISLQNGLEQIQQAWWELGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVASYGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDAPFIEQEFGVKPSQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+ G+G K A  +L ++ ++E+    AS     K R+ + +  E AR+ 
Sbjct: 175 GLTGMSSSQVPGVAGLGPKAAQAILTQFTDIEHAY--ASEALASKYRKKLDQEIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           +++  L+TD+ +   L+ +  E
Sbjct: 233 KQVATLKTDIELGFNLQDIRFE 254


>gi|90413508|ref|ZP_01221499.1| putative exodeoxyribonuclease IX [Photobacterium profundum 3TCK]
 gi|90325440|gb|EAS41923.1| putative exodeoxyribonuclease IX [Photobacterium profundum 3TCK]
          Length = 258

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 132/261 (50%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP--VNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R   A P       G P   N     C  L K+++ S      SH   
Sbjct: 4   HLVVIDALNLIRRVHAAQP-------GEPDVQNTARVCCQALSKIIKFSE----PSHIVA 52

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD+      +R E+ P YK  R  +P  L   + +++ A    GI ++   G EADD++
Sbjct: 53  VFDHHGDDRGWRAELLPHYKEGRKPMPPELQAGMEIIQDAFMDLGIDSLLSDGDEADDLV 112

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT           VTIISTDK   QL+SPT  + D  ++  +D   V K++G+ PE++  
Sbjct: 113 ATLALKVASRHQQVTIISTDKGYCQLLSPTLRVRDYFQQRWLDSPFVEKEYGVKPEQLPD 172

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGIPGIG K A  LL  Y +L++IL  A  +  K +++ I ++ E+A 
Sbjct: 173 YWGLAGISSSKIPGIPGIGPKAALELLSLYPDLDSIL-QAEDLPTKWQKK-ITDHRESAE 230

Query: 242 LSRKLVMLRTDVPITIPLEHL 262
            S+K+  L+TD+ +   L+ +
Sbjct: 231 ASKKVASLKTDLTLGFNLQDI 251


>gi|169835973|ref|ZP_02869161.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 180

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           + +V+   RR+AK INF ++YG+SP  L+    +   EA  +I  YF+    I E+IE+T
Sbjct: 1   MAQVTSNQRRNAKVINFGVLYGMSPHGLSAATGMSFIEAKKFIDDYFNLRRPIREFIEET 60

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
               +  GYV T FGRR    ++ S    +R   +RAA N PIQG+ AD+ +RAM+   +
Sbjct: 61  LEKAKNEGYVTTYFGRRRPTPDVKSSNFMVREAAKRAAANMPIQGTEADLMKRAMLRTEE 120

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            L +     + +LQIHD ++ E P++      +I+   ME +  P+++++  LKV+IK  
Sbjct: 121 KLGN---LGEQILQIHDSILVECPKKNADKVVEILRFEME-SVAPELDIK--LKVDIKTG 174

Query: 970 NNWQE 974
            +W E
Sbjct: 175 EHWGE 179


>gi|220912533|ref|YP_002487842.1| 5'-3' exonuclease [Arthrobacter chlorophenolicus A6]
 gi|219859411|gb|ACL39753.1| 5'-3' exonuclease [Arthrobacter chlorophenolicus A6]
          Length = 315

 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 29/235 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RAFY  P   R+ DG PVNA+ G  +M+ +L  +      A+H    +D
Sbjct: 5   LMLLDTASLYFRAFYGLPDTIRRPDGTPVNAVRGLLDMIARLTTDYH----ATHLVACWD 60

Query: 67  ---YPAVTFRNEIYPDYKANRPK-----------IPEMLLPQLPLVRLATQAFGIPAIEI 112
               P   +R ++ P YKA+R             +P+ L  QLP++R A +  GI  +  
Sbjct: 61  DDWRP--QWRVDLVPTYKAHRVAEANPGGTDVEVVPDALEAQLPMIRKALELAGIAIVGA 118

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDI---E 166
              EADD+I TY   A      V +++ D+DL Q+         +Y       +++   E
Sbjct: 119 ADHEADDVIGTY---ASHADMPVDVVTGDRDLFQVCDDERQVRVIYTARGMRNLEVCTEE 175

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
            ++ K+ + P++      L GD+ D +PG+ GIG KTAA LL +YG L+ +L  A
Sbjct: 176 TIVAKYKVLPQQYADYATLRGDASDGLPGVAGIGEKTAASLLLKYGTLDALLAAA 230


>gi|269965062|ref|ZP_06179227.1| exodeoxyribonuclease IX [Vibrio alginolyticus 40B]
 gi|269830365|gb|EEZ84590.1| exodeoxyribonuclease IX [Vibrio alginolyticus 40B]
          Length = 260

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 130/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEANPTHIIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +P  LL  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPLPLLQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPNQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E     AS     K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFESIEAAY--ASEDLVPKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+ D+ +   L+ +
Sbjct: 233 KRVAALKCDIELGFNLQDI 251


>gi|91228736|ref|ZP_01262648.1| exonuclease IX [Vibrio alginolyticus 12G01]
 gi|91187724|gb|EAS74044.1| exonuclease IX [Vibrio alginolyticus 12G01]
          Length = 260

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 130/259 (50%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEANPTHIIAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +P  LL  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPLPLLQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E     AS     K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFESIEAAY--ASEDLVPKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+ D+ +   L+ +
Sbjct: 233 KRVAALKCDIELGFNLQDI 251


>gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder]
          Length = 604

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 120/513 (23%), Positives = 233/513 (45%), Gaps = 50/513 (9%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  YD  V+ R  GI M        D  ++++++D      G   H +  + + ++   
Sbjct: 95  HNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFKEGGIGHKLEELVKHYIDAP 154

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL---IVEKLLHVYERLD 573
             E +K+  +++  +  +        +E +N   QL+  + P L   +++KL+ +   + 
Sbjct: 155 VAENVKTLMATLAREYKTTKAHIWTKVEWTNPYYQLYAGMDPILAARLLQKLIPLVPSVS 214

Query: 574 KPMI-------DVVSQMEITGIQIDQDLLKQVSAEISKN---LLSLEENIYDLSGEKFNL 623
           + ++       ++ S ME  G  +D +  +++S ++ +      S  + +Y L     N+
Sbjct: 215 QDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADILYGLE----NV 270

Query: 624 SSPKQLGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           +SP Q+ + L  + +K     +T+ GQ K     L+++    +P+ + I E ++  K + 
Sbjct: 271 NSPIQVAEALMRRGVKITE--RTEGGQPKVDKVLLDRLIKEGDPLAEAISEAKKWGKWEK 328

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           T+     +  + +  R H   +     T R++      Q +P    L   +RR F++   
Sbjct: 329 TWVRKFLDSRDSK-DRCHASINPLQARTARMSITGIPAQTLPSGDWL---VRRCFLADEG 384

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-GVNIEKVSPQMRRHA 801
           + + S DY   ELR+LA ++    + Q F +  D+H M A   +    I K SP+ R++A
Sbjct: 385 ELMASVDYQAQELRVLAALSGDRTMIQAFRDGADLHLMTARAAWPDREITKDSPE-RKYA 443

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT+NF  +YG     +A Q  +    A   +  +   +PG+ +   K +    Q G++ T
Sbjct: 444 KTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQKLSRKLQMEASQKGHIIT 503

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
             GRR+  D    P  +       +A+N  IQ S+ D+T RA+I +H++         + 
Sbjct: 504 PVGRRLPVD----PSRAY------SALNYLIQSSSRDVTGRALIRLHEA----GFTRYLR 549

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           L IHDE++  VP ++    +Q I   M +   P
Sbjct: 550 LPIHDEILASVPADKAQWGAQEIARLMAEQMGP 582


>gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
 gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
          Length = 602

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 116/514 (22%), Positives = 222/514 (43%), Gaps = 54/514 (10%)

Query: 467 HNIKYDKLVLHR-YGISMRGFE----DIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  YD  V  +  G+ M        D  ++++++D      G + H +  + + +L   
Sbjct: 95  HNASYDLQVFDKCLGVPMEELWPKVVDTKILAHLVDPRGRKEGGTGHSLEELTRHYLDAD 154

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-------------IVE 563
             + +K+  + +  ++ +        +   N   QL+  + P L             +  
Sbjct: 155 VADTVKTLMTDLAKEEKTTKANVWKKVSLDNPRYQLYAGMDPILACRLRQKLSPLVPVSA 214

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD---LSGEK 620
           + L  YER    + +V S ME TG  +D D  +++S       L L+E++     LS   
Sbjct: 215 RGLVGYER---DLAEVCSVMERTGFLLDVDYTRKLSTR-----LRLDESVASEIALSYGC 266

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
            N++S  Q+ D+L     +  G +T TG+ +     L Q+    N   +++++ ++  K 
Sbjct: 267 ENVNSTDQVADVLEQMGAWIPG-RTPTGKKQVNDTLLAQLAKDGNEFARSVIDAKKAGKW 325

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           + T+ D     ++    R H   +     T R++  E   Q +P    +   IRR F++ 
Sbjct: 326 RKTWVDRFLQTVDP-DGRCHASINPLQARTARMSITEIPAQTLPAGDWM---IRRCFLAD 381

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
             + + S DY   ELR+LA ++    + + F    D+H + A   FG +I K  P+ R++
Sbjct: 382 EGELIASVDYQAQELRVLAALSGDPTMIRAFAEGQDLHLLTARAAFGDHITKDDPE-RKY 440

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +NF  +YG     ++ Q  +    A   +  +   +PG+     K +    ++G + 
Sbjct: 441 AKVVNFGRVYGGGAKTVSEQTGLGFMAAKQVVDGFDKAYPGVRVLSHKLQEEAVKSGQIV 500

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T  GR +  D+  +           AA+N  IQ ++ D+T +A+I +H++         +
Sbjct: 501 TPTGRVLPVDQDRA----------YAALNYLIQSTSRDVTGKALIRLHRA----GFGPNL 546

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
            L IHDE++  VP  +    +  I   M +   P
Sbjct: 547 RLPIHDEVLASVPAAKARWGANRIAEIMREQMGP 580


>gi|254285570|ref|ZP_04960534.1| exodeoxyribonuclease IX [Vibrio cholerae AM-19226]
 gi|150424432|gb|EDN16369.1| exodeoxyribonuclease IX [Vibrio cholerae AM-19226]
          Length = 283

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 129/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y        VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LAYKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 257 KQVSALKTDIELGFNLQDI 275


>gi|323491411|ref|ZP_08096595.1| flap endonuclease-like protein [Vibrio brasiliensis LMG 20546]
 gi|323314280|gb|EGA67360.1| flap endonuclease-like protein [Vibrio brasiliensis LMG 20546]
          Length = 260

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 13/257 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + +Q    ES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTIATTSRTIQRILNESQPTHIIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK NR  +PE L+  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQERGWRAEVLPQYKENRKPMPEPLMNGLEAIQDAWWKLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   +  ++G+ P ++    
Sbjct: 115 LAMKVASHNEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEMEFGVKPHQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PGIPG+G K A  +L ++ N+E     AS     K R+ + E+ E+AR  
Sbjct: 175 GLAGISSSQVPGIPGVGPKAAKEILTQFDNIEQAY--ASDELPAKYRKKLDEHIESARKC 232

Query: 244 RKLVMLRTDVPITIPLE 260
           +++  L+TD+ +   L+
Sbjct: 233 KQIAALKTDMELGFNLQ 249


>gi|87119348|ref|ZP_01075246.1| 5'-3' exonuclease [Marinomonas sp. MED121]
 gi|86165739|gb|EAQ67006.1| 5'-3' exonuclease [Marinomonas sp. MED121]
          Length = 262

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 136/269 (50%), Gaps = 21/269 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAI----AGFCNMLWKLLQNSRKES 56
           MQK     ++DG + I R + A   L ++ D  PV  I    +   + L +LL       
Sbjct: 1   MQK--RFLIIDGLNLIRRLYAA---LEKESD--PVRRIERTQSTSLDALSRLLHQ----- 48

Query: 57  IASHFAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               FAV+ FD    T+R++++P+YK  R  + + LL  +P      +   +PA+ + G+
Sbjct: 49  FEPDFAVVVFDSNGQTWRHKVFPEYKLGRIPMDDALLQSMPEFAKLFRFNRVPALRLSGW 108

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEHVIKKWGI 174
           EADD+IAT    A ++     IISTDK   QL+     L YD   +   D E V +K+G+
Sbjct: 109 EADDLIATLAVKAAQKDVKSYIISTDKGFTQLLDNECILQYDYFAKLGYDKEWVNEKYGV 168

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           P  ++    AL GD  + IPGI GIG KTA  +L +   +E+I  N      K R+  +L
Sbjct: 169 PATQLGDYWALVGDITNKIPGIKGIGPKTAVKVLSQANTVESIYQNLEAFDPKMRQ--ML 226

Query: 235 EYA-ETARLSRKLVMLRTDVPITIPLEHL 262
           E   E  +LSR L +L+TDV I + L   
Sbjct: 227 EGGLEQCQLSRSLALLKTDVEIGVKLSQF 255


>gi|297584247|ref|YP_003700027.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Bacillus selenitireducens MLS10]
 gi|297142704|gb|ADH99461.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Bacillus selenitireducens MLS10]
          Length = 297

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 134/260 (51%), Gaps = 14/260 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCN----MLWKLLQNSRKESIASHFA 62
           L L+DG + + R ++AT   +++ + LP N    F N     + KL Q  R+++I S   
Sbjct: 6   LLLIDGFNLLSRGYFATSF-NKEPEELPRNGEGRFTNAVNVFMTKLFQLIREQNIDSVHV 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
                    FRN+ Y  YKA R  +PE L+ Q   +        +P     G+EADDI+ 
Sbjct: 65  SWDGKRNEGFRNQEYDFYKAQRTDLPEPLIDQYHFLTEILADLQVPQSSAPGYEADDIMG 124

Query: 123 TYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI--DIEHVIKKWGIPPEK 178
           T    +  E+ G  V + S D+DL QL+          K++++  D+    +++ + P +
Sbjct: 125 TLAKRWGNERHG-DVILYSNDRDLFQLIDEHISQRVAKKKQEVVYDLNLFREEFDLLPSQ 183

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQ--KKRRENIL 234
            V ++AL GDS DNIPG PG+G K+A  L++ Y +L  +   + A  +    K+ R+N++
Sbjct: 184 WVDVKALLGDSSDNIPGCPGVGEKSAYPLIRHYESLTGVYKALEADELDPVFKRYRKNLI 243

Query: 235 EYAETARLSRKLVMLRTDVP 254
           E  E AR+S KL  + T VP
Sbjct: 244 EGEELARISYKLATIETQVP 263


>gi|321309590|ref|YP_004191919.1| DNA polymerase I: 5'-3' exonuclease [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801434|emb|CBY92080.1| DNA polymerase I: 5'-3' exonuclease [Mycoplasma haemofelis str.
           Langford 1]
          Length = 279

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 24/277 (8%)

Query: 9   LVDGSSFIYRAFYATP---LLSRKHD-------GLPVNAIAGFCNMLWKLLQNSRKESIA 58
           ++DG++FIY+A++A+    + S+K D       G  V  +   C  L  LL+   K ++ 
Sbjct: 8   IIDGNAFIYKAYFASQAELIKSKKPDEEISKFFGRTVQVVLNMCKPL--LLRKDYKYAV- 64

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI-QGFEA 117
               V+FD    TFR E + +YKANR  +P  LL  L  ++      G   I   Q +E 
Sbjct: 65  ----VVFDSSKKTFRQEKFQNYKANRASMPAPLLKGLDSIKSMLMGLGFRIINAPQNYEG 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-----YDTVKEEKIDIEHVIKKW 172
           DD+I T +++      +  I STD+DL+QLV+    +          +E    E      
Sbjct: 121 DDVICTLSHLFHNREVSTDIFSTDRDLLQLVTENITVNILRSKGLPPQEYKHEEFSTLTG 180

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P ++  L+A+ GDS DN  GIPGIG KTA  LL++Y  + NI  N  ++  + R + 
Sbjct: 181 GLSPSQIPQLKAMAGDSSDNYGGIPGIGSKTAMELLKKYSTIANIYENLDKLPDRIRGK- 239

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           ++E+ +T  L  ++     D+ I   L+     + +G
Sbjct: 240 LMEHKKTVDLFLEISTTVKDIEIPKDLDSYTKNEASG 276


>gi|217031813|ref|ZP_03437316.1| hypothetical protein HPB128_199g21 [Helicobacter pylori B128]
 gi|216946465|gb|EEC25067.1| hypothetical protein HPB128_199g21 [Helicobacter pylori B128]
          Length = 400

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 17/254 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           KE  L L+D  ++++R++Y +    PL + K  G P   + G   M+ K  ++ RK    
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             FA+  +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 64  IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA+   +A    +   I S DKD  QL+S    L+D   E     +  ++K+GI P +
Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235
               Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N   A  +   K  + +++
Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236

Query: 236 YAETARLSRKLVML 249
              +A LS++L  L
Sbjct: 237 DKGSAFLSKELATL 250


>gi|284031533|ref|YP_003381464.1| 5'-3' exonuclease [Kribbella flavida DSM 17836]
 gi|283810826|gb|ADB32665.1| 5'-3' exonuclease [Kribbella flavida DSM 17836]
          Length = 308

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 140/301 (46%), Gaps = 27/301 (8%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RAF+  P   +  DG P NA+ G  + + +L++N R   + + +    D  
Sbjct: 2   LLDTASLYFRAFFGVPDTMKAADGTPTNAVRGLLDFIARLVENHRPTQLVACWD---DNW 58

Query: 69  AVTFRNEIYPDYKANRPK-----------IPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             ++R  + P YKA R +           +P+ L  Q+P +R    + GI        EA
Sbjct: 59  RPSWRVALIPSYKAQRVEYVATGGEQVEDVPDRLEVQVPYIRACLDSLGIAIAGAPDHEA 118

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLYDTVK----EEKIDIEHVIK 170
           DD+I T ++ A      V +++ D+DL QL+  T     +Y   K     E  D + ++ 
Sbjct: 119 DDVIGTLSHRATT---PVDVVTGDRDLFQLIDDTRGVRVIYTAAKGVGRAEVYDEKALLA 175

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QK 227
           K+ +P  +      L GD+ D +PG+ GIG KTAA L+  YG L  I   A+        
Sbjct: 176 KYQVPAGRYADFATLRGDASDGLPGVKGIGEKTAASLVTAYGGLAEIRAAAADPATPMSP 235

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
             +  IL+ A+   ++ K+V + TD P++     L  E  +  R +  ++ LE      R
Sbjct: 236 SVKRKILDAADYLDVAPKVVAVATDAPVSAFDPDLPTEVADPQRWLDLVELLELGGSAQR 295

Query: 288 V 288
           V
Sbjct: 296 V 296


>gi|260889281|ref|ZP_05900544.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860692|gb|EEX75192.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 346

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 134/279 (48%), Gaps = 15/279 (5%)

Query: 16  IYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           +YR+ +A  +  R  +G+   A  GF N L  +++  R + + +   V  D      R  
Sbjct: 1   MYRSHFAL-MGMRNSNGMSTGATFGFINTLESVIREFRPDYLVACLDVKRDELE---RAG 56

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI---AEKEG 132
               YKA+R  +PE L+ Q+  +      + IP  +  G EADD+IAT+       E E 
Sbjct: 57  ELETYKAHRESMPEELVMQIDTIMKVLDGYRIPKYKKAGQEADDVIATFATKFSNDEDEQ 116

Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------EHVIKKWGIPPEKMVCLQAL 185
             V +I+ DKDL QLV     +    K +K          E V++  G+ P+K+  L  L
Sbjct: 117 IEVFVITGDKDLAQLVDGKINIALLGKGDKNSAFKHIKTDEDVVEYLGVTPDKIPDLFGL 176

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD  D IPG+ GIG K    L+  YGNLE I  N   IK  K++E +L   E A +SR+
Sbjct: 177 MGDKSDGIPGVAGIGPKNGVKLITTYGNLEGIYENIDEIKG-KQKEKLLTDKENAFISRE 235

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           L  ++ ++ I    + L  E+ +   L+   + L+F + 
Sbjct: 236 LATVKRELDIEYDKKKLKFEEKDFDSLLELYEELDFKRF 274


>gi|158315953|ref|YP_001508461.1| 5'-3' exonuclease [Frankia sp. EAN1pec]
 gi|158111358|gb|ABW13555.1| 5'-3' exonuclease [Frankia sp. EAN1pec]
          Length = 318

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 78/235 (33%), Positives = 112/235 (47%), Gaps = 24/235 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L D  S  +RAF+  P   R  DG+ VNA+ G  ++L + +   R   +   F   
Sbjct: 2   DRLLLADTPSLYFRAFHGVPRSVRAPDGMAVNAVRGLLDVLARQIVEVRPRRLVCCFDAD 61

Query: 65  FDYPAVTFRNEIYPDYKANR----------------PKIPEMLLPQLPLVRLATQAFGIP 108
           +  PA  FR  +   YKA+R                 ++P+ L  QLP++     AFGI 
Sbjct: 62  WR-PA--FRVALIGSYKAHRVAGPTPGPAAGAGGVEEEVPDELEAQLPVIDAVLDAFGIA 118

Query: 109 AIEIQGFEADDIIATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCL---YDTVKEEKI 163
            +E  GFEADD+I T    +     G  V I++ D+DL QLV   T +   Y   +   +
Sbjct: 119 RVEAAGFEADDVIGTLATRHSGRPGGGPVDILTGDRDLFQLVCDDTGVVVRYAVERFAVV 178

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           D   +  ++GIP         L GD  D +PG+ GIG KTAA LL  +G+L  IL
Sbjct: 179 DEASISARYGIPGRAYADFAVLRGDPSDGLPGVAGIGAKTAAALLGRFGSLRAIL 233


>gi|119946402|ref|YP_944082.1| exonuclease IX [Psychromonas ingrahamii 37]
 gi|156630381|sp|A1SYB8|XNI_PSYIN RecName: Full=Protein Xni
 gi|119865006|gb|ABM04483.1| 5'-3' exonuclease [Psychromonas ingrahamii 37]
          Length = 262

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG---FCNMLWKLLQNSRKESIASHFAV 63
           L ++D  + + R +    +  ++H   P   IA      N L KLL+  +     +H   
Sbjct: 5   LLIIDAMNLVRRIY---AVQQKQHGDTPTALIATQSTTTNALKKLLRIHQ----PTHAIC 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A ++R++IYP+YK  R  IPE+L   LP ++      GI ++  +  EADD+IA 
Sbjct: 58  VFDSHAPSWRHQIYPEYKQGRKPIPELLKQGLPAIQEQFFDLGIDSLVTEEDEADDLIAC 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 K+     I+STDK   QL++ +  LYD  +   +  + V +K GI  +++    
Sbjct: 118 LADKIAKQQQKCIIVSTDKGFYQLLNESIQLYDYFQNSFVIRQQVHQKMGISIQQLNDYW 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           A+TG S   I G+ GIG K A  LLQ+YG+L NI   A      K    I      A L+
Sbjct: 178 AITGISSSAIKGVEGIGSKGALSLLQQYGSLNNIFQQAED-SNNKLLTKIKSQQSNAILA 236

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           ++LV L+TD+ +   L+ L   D
Sbjct: 237 KQLVTLKTDIKLGFNLKDLRYTD 259


>gi|66394986|ref|YP_240958.1| ORF037 [Staphylococcus phage G1]
 gi|62637008|gb|AAX92119.1| ORF037 [Staphylococcus phage G1]
 gi|182627951|gb|ACB89113.1| gp ORF120 [Staphylococcus phage A5W]
          Length = 286

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           +RI+    K   + Q F N  DIH+  A+ ++   +E+V+ + R+  K +NF + +G SP
Sbjct: 1   MRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESP 60

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F  A +  +  SEA +  ++YF   P +   I+    FV+Q GYV+T+ G R       S
Sbjct: 61  FSFAGKNNMEVSEAEEIFEKYFQTKPSVKTSIDNVHEFVQQYGYVDTMHGHRRFIRSAQS 120

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               I+N   R + N  IQGS + +T  ++  +   ++   L +K++  +HD ++ + P 
Sbjct: 121 TDKKIKNEGLRQSFNTIIQGSGSFLTNMSLTYLDDFIQSRNLKSKVIATVHDSILIDCPP 180

Query: 935 EEITTASQIIVHSME-------KACLPKINLRVPLKVNIKVSNNWQE 974
           EE    +++ +H ME       KA +    ++ P++ ++++  N+ +
Sbjct: 181 EEAKIMAKVTIHIMENLPFDFLKAEIDGKEVQYPIEADMEIGLNYND 227


>gi|308374490|ref|ZP_07436248.2| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu006]
 gi|308341736|gb|EFP30587.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu006]
          Length = 306

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 134/276 (48%), Gaps = 33/276 (11%)

Query: 17  YRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEI 76
           +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +  D+    FR ++
Sbjct: 3   FRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLDLDWRP-QFRVDL 59

Query: 77  YPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            P YKA+R             ++P+ L PQ+ ++     AFGI      GFEADD++ T 
Sbjct: 60  IPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTL 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHVIKKWGIPPE 177
                ++   V ++S D+DL+Q+V+    P   LY      K        V +++G+P  
Sbjct: 120 ATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAH 177

Query: 178 KMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRR 230
           +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   K    K  R
Sbjct: 178 RAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLR 237

Query: 231 ENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
             +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 238 TKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 273


>gi|149925128|ref|ZP_01913436.1| 5'-3' exonuclease family protein [Plesiocystis pacifica SIR-1]
 gi|149814005|gb|EDM73642.1| 5'-3' exonuclease family protein [Plesiocystis pacifica SIR-1]
          Length = 293

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 129/258 (50%), Gaps = 14/258 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+  ++R+F+  P  +      P     G    L + L    +E   SH A+ F
Sbjct: 2   QLHLIDGTYELFRSFFGAPPATS-----PSGREVGAARGLLRSLLALLREEGTSHVAIAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT-Y 124
           D+   +FRNE++  YK      P  L  Q PL    ++A G+    +  FEADD +AT  
Sbjct: 57  DHVIESFRNELFDGYKTGAGMDPA-LWQQFPLAERVSEALGLVVWPMVEFEADDALATGA 115

Query: 125 TYIAEKEGFA-VTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              A+  G   + + S DKDL Q V  +   L+D  + E  D + + +K+G+ P  +  L
Sbjct: 116 ARFADAPGVERILLCSPDKDLGQCVRGSKVVLFDRRRGETYDADGIREKFGVDPASIPDL 175

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS----RIKQKKRRENILEYAE 238
            AL GDS D IPG+P  G K+ A +L EYG+L+ I  + S    +++  K   + L    
Sbjct: 176 LALVGDSADGIPGLPRWGMKSTATVLGEYGHLDAIPDDPSAWTVKVRGAKGLADKLRAGR 235

Query: 239 T-ARLSRKLVMLRTDVPI 255
             A+L R L  LRTDVP+
Sbjct: 236 ADAQLYRTLATLRTDVPL 253


>gi|283786498|ref|YP_003366363.1| Uncharacterised exonuclease xni [Citrobacter rodentium ICC168]
 gi|282949952|emb|CBG89580.1| Uncharacterised exonuclease xni [Citrobacter rodentium ICC168]
          Length = 257

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 27/273 (9%)

Query: 1   MQKEN----HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M +EN    HL +VD  + I R  A   +P +      L             +L+ +S+ 
Sbjct: 1   MLRENTVAVHLLIVDALNLIRRIHAVQGSPCVETCQHALE------------QLILHSQ- 47

Query: 55  ESIASHFAVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
               +H   +FD  A   ++R++   DYKA RP +P+ L  ++P +R A +  G+     
Sbjct: 48  ---PTHAVAVFDDEARNSSWRHQRLADYKAGRPPMPDELQQEMPSLRAAFEQRGVACWMS 104

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
            G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++
Sbjct: 105 SGNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIAKEF 164

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P+++     L G S   +PG+ GIG K+A  LL ++  LE++  N + + +K R  N
Sbjct: 165 GVSPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLAQFQTLEDLYANIAAVPEKWR--N 222

Query: 233 ILE-YAETARLSRKLVMLRTDVPITIPLEHLIL 264
            LE + E A L R +  L+TD+ +   L+ L L
Sbjct: 223 KLETHKEMAFLCRDIARLQTDLHLDGNLQQLRL 255


>gi|224584760|ref|YP_002638558.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|254799413|sp|C0PXF9|XNI_SALPC RecName: Full=Protein Xni
 gi|269849493|sp|Q57KE5|XNI_SALCH RecName: Full=Protein Xni
 gi|224469287|gb|ACN47117.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 251

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +  ++ +K R++ +
Sbjct: 160 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDKVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 219 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG]
 gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG]
          Length = 608

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 127/512 (24%), Positives = 237/512 (46%), Gaps = 65/512 (12%)

Query: 467 HNIKYDKLVLHRY-GISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++   
Sbjct: 95  HNAAFDLQVIERMLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPV 154

Query: 517 RKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             E +K+      +K     DKI       D   + +A    + IL   LL +   +V +
Sbjct: 155 TAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYA--GMDTILVSRLLGKVAPLVPE 212

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI---SKNLLSLEENIYDLSGEKF 621
             H     +  + +V+S +E TG  +D D  +++SA++   S++  ++    Y +     
Sbjct: 213 SSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVARYAYGVD---- 268

Query: 622 NLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +++S ++L D L  T +K     +T TG+ +  A+ LE +    N + K  +E ++    
Sbjct: 269 SVNSTEKLADGLERTGVKIK--GRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSW 326

Query: 681 KSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           + T+   + N I +R    RVH   +     T R+++  P+ QN+P    +   +RR F+
Sbjct: 327 EKTW---VRNFIERRDANDRVHPGINPLQARTARMSTNNPSAQNLPAGDWM---VRRCFL 380

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           +   + ++S DY   ELR+LA +A    + Q F+++ D+H+ + A+  GV+        R
Sbjct: 381 ADSGQLMVSVDYQAQELRVLAALANDRTMIQAFKDNADLHQ-ITADASGVD--------R 431

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           +  K +NF+ ++G  P  +A Q  I   EA   I  +   +P +    +  +      GY
Sbjct: 432 KVGKMVNFAYVFGSGPSTIAAQAGITFPEAKRVIAGFEQSYPEVTALSKSLQREAANLGY 491

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V T  GRR+  D    P          AA+N  +Q ++ D+T  A++ +H++     +  
Sbjct: 492 VITPTGRRLPVD----PDRGY------AALNYMVQSTSRDVTASAVLRLHEA----GMTP 537

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            + L IHDE++  VPE E    ++ I   ME+
Sbjct: 538 MIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQ 569


>gi|62181481|ref|YP_217898.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62129114|gb|AAX66817.1| exonuclease IX, 5'-3' exonuclease [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322715965|gb|EFZ07536.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 271

 Score =  115 bits (287), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 60  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 120 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 179

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +  ++ +K R++ +
Sbjct: 180 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDKVPEKWRKK-L 238

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 239 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 269


>gi|111017852|ref|YP_700824.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817382|gb|ABG92666.1| probable DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 318

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 31/231 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RA+YA P      DG  VNA+ GF +M+  L+   +     S  AV  D
Sbjct: 5   LLLLDGASLWFRAYYALPDSITSPDGRSVNAVRGFTDMVAALITKHQ----PSRLAVCLD 60

Query: 67  Y---PAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               PA  FR E  P YKA+R          ++P+ L PQ+P++     A GI     +G
Sbjct: 61  LDWRPA--FRVEAVPTYKAHRVAEDTGGAEEEVPDTLSPQVPMILDVLAATGIATAGAEG 118

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEH 167
            EADD++ T   I  ++     +++ D+DL+Q+V+    P   LY      K E +  + 
Sbjct: 119 LEADDVLGTLAAIETRD--TTIVVTGDRDLLQVVTDAPVPVRVLYVVRGLAKAELLGPDE 176

Query: 168 VIKKWGIPP----EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           V  K+G+P     E    L  L GDS D +PG+ GIG KTA+ L+ +YG+L
Sbjct: 177 VAAKYGVPADRAGEAYAELALLRGDSSDGLPGVKGIGEKTASSLIMQYGSL 227


>gi|297198471|ref|ZP_06915868.1| 5'-3' exonuclease [Streptomyces sviceus ATCC 29083]
 gi|297147105|gb|EDY61418.2| 5'-3' exonuclease [Streptomyces sviceus ATCC 29083]
          Length = 306

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 77/238 (32%), Positives = 124/238 (52%), Gaps = 23/238 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RA++  P   +  DG PVNA+ G    + +L+++   + + +      D
Sbjct: 5   LMLLDTASLYFRAYFGVPESVKAPDGTPVNAVRGLLEFIDRLVKDHHPDLLVACMDA--D 62

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +    +R ++ P YKA+R            ++P+ L PQ+P++     A GI  + + G+
Sbjct: 63  WRP-QWRVDLIPSYKAHRVAEEHESGPDEEEVPDTLSPQVPVIEAVLDALGIARVGVAGY 121

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLY--DTVKEEKIDIEHVIK 170
           EADD+I T+T  A+  G  V I++ D+DL QLV        LY    V   ++  E  ++
Sbjct: 122 EADDVIGTFT--AQATG-PVDIVTGDRDLYQLVDDERQVRVLYPLKGVGTLQLTDEAWLR 178

Query: 171 -KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            K+G+     V L  L GD  D +PG+PGIG KTAA LL ++G+L  I+      K K
Sbjct: 179 EKYGVDGRGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDQFGDLAGIMAAVDDPKAK 236


>gi|59711201|ref|YP_203977.1| exonuclease IX [Vibrio fischeri ES114]
 gi|75354474|sp|Q5E7A7|XNI_VIBF1 RecName: Full=Protein Xni
 gi|59479302|gb|AAW85089.1| exonuclease IX (5'-3' exonuclease) [Vibrio fischeri ES114]
          Length = 259

 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 125/262 (47%), Gaps = 13/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           + I        + +    KE+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---------NQDDIQAVITTTTRTINKILKETEPTHIIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P YK +R  +PE L   +  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQDRGWRAEILPQYKEDRKPMPEALQKGMDDIQEAWWKLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   V K++G+ PE++    
Sbjct: 115 LANKVAMHNEQVTIISTDKGYCQLLSPTLRIRDYFQHRWLDAPFVEKEFGLKPEQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   I GIPG+G K A  +L ++  +E    N S    KK R+   E+ ETA L 
Sbjct: 175 GLAGISSSKITGIPGVGPKAALEILTQFPTIE--AANESEDLPKKYRKKFDEHYETAILC 232

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  LRTD+ +   L+ +  E
Sbjct: 233 RQVAGLRTDIELGFNLQDIRYE 254


>gi|237729762|ref|ZP_04560243.1| exonuclease IX [Citrobacter sp. 30_2]
 gi|226908368|gb|EEH94286.1| exonuclease IX [Citrobacter sp. 30_2]
          Length = 251

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 115/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A    +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDEARNSGWRHQRLPDYKAGRPPMPDDLHQEMPALRAAFEQRGVCCWVSS 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLAVKVSQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+++     L G S   IPG+ GIG K+A  LL ++  LE +  +   + +K R++ +
Sbjct: 160 VLPQQLPDYWGLAGISSSKIPGVAGIGPKSATQLLAQFPTLEALYEHLDDVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
            E+ E A L R +  L+TD+ I   L+ L L
Sbjct: 219 EEHREMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|273067853|gb|ACZ97543.1| DNA polymerase I [Lactobacillus reuteri]
          Length = 286

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 6/207 (2%)

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIE 166
           ++  +EADDII T    A+  G+   I++ D+DL QL S  T +  T K     E     
Sbjct: 3   DLANYEADDIIGTLAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTPA 62

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
           HV +K GI P +++ ++AL GDS DN PG+  IG KTA  L++++G++E +  +   +K+
Sbjct: 63  HVEEKLGITPRQIIDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYEHIDELKK 122

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            K +E+++E  E AR  + L  +  D PI I L  L  E      L+ F K + F   + 
Sbjct: 123 SKMKEHLIEDEEIARQCKTLATILRDAPIKISLADLKYEGPQNDELVKFYKEMGFKSFLK 182

Query: 287 RVATTY--DCDAANIEPVVLDINTTEN 311
           ++   +  D D A I P+   + T +N
Sbjct: 183 KMDPDHVGDEDEATIAPISYTVLTKDN 209


>gi|198241843|ref|YP_002216946.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|226733932|sp|B5FTX5|XNI_SALDC RecName: Full=Protein Xni
 gi|269849494|sp|B5QWQ6|XNI_SALEP RecName: Full=Protein Xni
 gi|269849495|sp|B5RDV0|XNI_SALG2 RecName: Full=Protein Xni
 gi|197936359|gb|ACH73692.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326624711|gb|EGE31056.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 251

 Score =  114 bits (286), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  GI      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 160 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 219 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|168242736|ref|ZP_02667668.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194447676|ref|YP_002046942.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|226733935|sp|B4TGM7|XNI_SALHS RecName: Full=Protein Xni
 gi|194405980|gb|ACF66199.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338115|gb|EDZ24879.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 251

 Score =  114 bits (286), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   TP +      L             +L+ +S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGTPCVETCQHALD------------QLIIHSQ----PTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKK-LETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|167550159|ref|ZP_02343916.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205324757|gb|EDZ12596.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 251

 Score =  114 bits (286), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 160 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYTHLDEVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 219 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|205353914|ref|YP_002227715.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858237|ref|YP_002244888.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205273695|emb|CAR38688.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710040|emb|CAR34395.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629027|gb|EGE35370.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 271

 Score =  114 bits (286), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  GI      
Sbjct: 60  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIRCWASD 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 120 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 179

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 180 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKK-L 238

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 239 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 269


>gi|213027747|ref|ZP_03342194.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 223

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 12  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 71

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 72  GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 131

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 132 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKK-L 190

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 191 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 221


>gi|197335724|ref|YP_002155351.1| hypothetical protein VFMJ11_0608 [Vibrio fischeri MJ11]
 gi|226733942|sp|B5FAT7|XNI_VIBFM RecName: Full=Protein Xni
 gi|197317214|gb|ACH66661.1| conserved hypothetical protein [Vibrio fischeri MJ11]
          Length = 262

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 125/262 (47%), Gaps = 13/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           + I        + +    KE+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---------NQDDIQAVITTTTRTINKILKETEPTHIIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P YK +R  +PE L   +  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQDRGWRAEILPQYKEDRKPMPEALQKGMDDIQEAWWKLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   V K++G+ PE++    
Sbjct: 115 LANKVAVHNEQVTIISTDKGYCQLLSPTLRIRDYFQHRWLDAPFVEKEFGLKPEQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   I GIPG+G K A  +L ++  +E    N S    KK R+   E+ ETA L 
Sbjct: 175 GLAGISSSKITGIPGVGPKAALEILTQFPTIE--AANESEDLPKKYRKKFDEHYETAILC 232

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  LRTD+ +   L+ +  E
Sbjct: 233 RQVAGLRTDIELGFNLQDIRYE 254


>gi|168463875|ref|ZP_02697792.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|213052487|ref|ZP_03345365.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213417739|ref|ZP_03350857.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213424898|ref|ZP_03357648.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213621784|ref|ZP_03374567.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213649814|ref|ZP_03379867.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213857391|ref|ZP_03384362.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|289829836|ref|ZP_06547351.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|269849496|sp|Q8Z433|XNI_SALTI RecName: Full=Protein Xni
 gi|195633258|gb|EDX51672.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 251

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 160 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 219 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|212712110|ref|ZP_03320238.1| hypothetical protein PROVALCAL_03190 [Providencia alcalifaciens DSM
           30120]
 gi|212685251|gb|EEB44779.1| hypothetical protein PROVALCAL_03190 [Providencia alcalifaciens DSM
           30120]
          Length = 251

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 3/207 (1%)

Query: 58  ASHFAVIFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           A+H   +FD      ++R+E  PDYKA R  +PE L  +LP +    +  GI   + +G 
Sbjct: 41  ATHVVAVFDEEGRHHSWRHEKLPDYKAGRQPMPESLHTELPNLVAQFEENGIHCWQSEGD 100

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADD+ AT        G  VTI+STDK   QL+SP   + D  ++  +D+  +  ++G+ 
Sbjct: 101 EADDLAATLAKRIANSGHTVTIVSTDKGYCQLLSPNLRIRDYFQKRWLDVPFIENEFGVK 160

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE++     L G S   +PG+ GIG K+A  LLQ + ++EN+  N   +++K +++ +  
Sbjct: 161 PEQLPDYWGLAGISSSKVPGVAGIGAKSATELLQRFRSIENLYANFDVLEEKWQKK-LAN 219

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL 262
             + A + R++  L+T++ +   L  L
Sbjct: 220 QKDIAIICREIATLKTNIALKGNLNQL 246


>gi|194445551|ref|YP_002042222.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|226733936|sp|B4T4W5|XNI_SALNS RecName: Full=Protein Xni
 gi|194404214|gb|ACF64436.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 251

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 160 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHPDEVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 219 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|291618647|ref|YP_003521389.1| Xni [Pantoea ananatis LMG 20103]
 gi|291153677|gb|ADD78261.1| Xni [Pantoea ananatis LMG 20103]
 gi|327395027|dbj|BAK12449.1| exodeoxyribonuclease IX Xni [Pantoea ananatis AJ13355]
          Length = 252

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 23/254 (9%)

Query: 5   NHLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +HL +VD  + I R  A   +P L             G    L +LL ++R     SH  
Sbjct: 3   HHLLIVDALNLIRRLHAVQGSPCLD------------GCVAALRQLLGHTR----PSHVV 46

Query: 63  VIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            +FD  A    +R+++ PDYK+ RP +PE L  ++P ++ A +A G+     +  EADD+
Sbjct: 47  AVFDGEARHQGWRHQLLPDYKSGRPPMPEDLQAEMPALQAAFRAAGVSCWIAEQDEADDL 106

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
            AT      + G   TI+STDK   QL++P   + D  ++  +D+  +  ++G+ P  + 
Sbjct: 107 AATLAVKMARAGHQATIVSTDKGYCQLLAPDIRIRDYFQKRWLDLPFIETEFGVAPTVLP 166

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ET 239
               L G S   IPGI GIG K+A  LLQ++G+LE++     ++  K R  N L+   E 
Sbjct: 167 DYWGLCGISSSKIPGIAGIGPKSARELLQQFGSLESLYQQLDQVPTKWR--NKLQTGQEM 224

Query: 240 ARLSRKLVMLRTDV 253
           A +SR +  L+ D+
Sbjct: 225 AFISRDVARLKQDL 238


>gi|16761750|ref|NP_457367.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143234|ref|NP_806576.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|25512792|pir||AF0862 5'-3' exonuclease [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504052|emb|CAD02798.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138867|gb|AAO70436.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 271

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 60  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 120 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 179

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 180 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKK-L 238

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 239 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 269


>gi|283969415|gb|ADB54441.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969418|gb|ADB54442.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969420|gb|ADB54443.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969440|gb|ADB54453.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969448|gb|ADB54457.1| DNA polymerase I [Leptospira kirschneri]
          Length = 144

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 95/146 (65%), Gaps = 2/146 (1%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     KT
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHKQAGGPFNIASTKELQKILFDNLKLRIVKKT 60

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +TG + T  + LE++  G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+ 
Sbjct: 61  QTG-FSTDHEVLEEL-AGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQ 731
               TGRL+S +PNLQNIPI+   G+
Sbjct: 119 TIAATGRLSSTDPNLQNIPIRDREGR 144


>gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper]
 gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper]
          Length = 609

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 127/516 (24%), Positives = 235/516 (45%), Gaps = 65/516 (12%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++   
Sbjct: 95  HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPV 154

Query: 517 RKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             E +K+      +K     DKI       D   + +A    + IL   LL +   +V +
Sbjct: 155 TAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYA--GMDTILVSRLLGKVAPLVPE 212

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL- 623
             H     +  + +V+S +E TG  +D D     S ++S+++L   E+   ++   + + 
Sbjct: 213 SSHKLIPYEHKLAEVMSYVERTGFLLDVDY----SEKLSEDMLRKAEHYTAVARYAYGVD 268

Query: 624 --SSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
             +S ++L D L  T +K     +T T + +  A+ LE +    N + K  +E ++    
Sbjct: 269 SVNSTEKLADGLERTGVKIK--GRTATNKRQVNAELLEALAEEGNALAKAAIEAKKWGSW 326

Query: 681 KSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           + T+   + N I +R    RVH   +     TGR+++  P+ QN+P    +   +RR F+
Sbjct: 327 EKTW---VRNFIERRDANDRVHPGINPLQARTGRMSTSNPSAQNLPSGDWM---VRRCFL 380

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P + + S DY   ELR+LA ++    + + FE   D+H+ V A+  GV+        R
Sbjct: 381 ADPGQIIASVDYRAQELRVLAALSGDQTMLRAFEEESDLHQ-VTADAAGVD--------R 431

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           +  K  NF + YG    +LAT   I   EA   ++ +   +PG+    ++ +      G+
Sbjct: 432 KIGKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYPGVDTLNKRMQQEAGSAGF 491

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           + T  GRR+  D    P  +       +A+N  IQ S+ D+T  A++ +H++        
Sbjct: 492 ITTPTGRRLPVD----PDRAY------SALNYLIQSSSRDVTGAAVLRLHEA----GFTP 537

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
            M L +HDE++  +PE +   A + +   ME+   P
Sbjct: 538 NMRLVVHDEVLLSLPEADAEAAVKEVGQIMEQRIGP 573


>gi|117928414|ref|YP_872965.1| 5'-3' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648877|gb|ABK52979.1| 5'-3' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 324

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 92/272 (33%), Positives = 127/272 (46%), Gaps = 28/272 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L  VD +S  +RAFY  P      DG PVNA+ G  + L  L++ S  E      AV  D
Sbjct: 17  LLAVDAASLYFRAFYGVPERFAARDGTPVNAVRGLLDALVTLIRLSEPE----FLAVCLD 72

Query: 67  ---YPAVTFRNEIYPDYKANRPK------IPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
               PA  FR    P YKA+R        +P  L  Q+PL+    QA GI  + + GFEA
Sbjct: 73  PDWRPA--FRVAALPAYKAHRAASDGSEIVPPELAVQIPLIPKVLQALGIAVVAVPGFEA 130

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLV---SPTTCLY---DTVKEEKIDIEHVIKK 171
                    +A +    V I + D+DL Q+V    P   LY        E +D  +V  +
Sbjct: 131 ---DDALATLAARHPGPVDIATGDRDLFQVVDDAKPVRVLYVQRGVRDAEVVDDGYVRHR 187

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL---INASRIKQKK 228
           +G+P         L GD  D +PGIPG+G KTAA LL+ +G+++ +L      S     +
Sbjct: 188 YGVPASSYADFAMLRGDPSDGLPGIPGVGEKTAARLLRTFGSVDALLAACAAGSADVPAR 247

Query: 229 RRENILEYAETARLSRKLVMLRTDVPI-TIPL 259
            RE I   A     +  +V +R DVPI T P+
Sbjct: 248 LRERISSAASYLAAAHIVVTVRRDVPIDTAPV 279


>gi|315444011|ref|YP_004076890.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Mycobacterium sp. Spyr1]
 gi|315262314|gb|ADT99055.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Mycobacterium sp. Spyr1]
          Length = 324

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 35/277 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF- 65
           L L+DG+S  +R+++  P      DG PVNA+ GF + +  ++   R      H  V+  
Sbjct: 13  LVLLDGASMWFRSYFGVPSSITAPDGRPVNALRGFLDAVSTVIARER-----PHRLVVCR 67

Query: 66  -DYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D     +R ++ P YKA+R             ++P+ L PQ+ ++     AFGI     
Sbjct: 68  DDDWRPQWRVDLIPSYKAHRVLEENPADGPDVEEVPDELTPQVDMIMEILDAFGIATAGA 127

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
             +EADD++ T     E++   V ++S D+DL+QLV     P   LY      K  K   
Sbjct: 128 AHYEADDVLGTLAAAEERD--PVVVVSGDRDLLQLVRDEPVPVRVLYLGKGLAKAVKWGP 185

Query: 166 EHVIKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V   +G+P E+     V L  L GD  D +PG+PGIG KTAA LL ++ +LENI+  A
Sbjct: 186 AEVADTYGVPLERAGSAYVELALLRGDPSDGLPGVPGIGEKTAATLLAQHNSLENIVAAA 245

Query: 222 ---SRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
              +    K  R+ +L  ++    +  +V + TD  +
Sbjct: 246 HDPASTLSKAHRKKLLAASDYIEKAEPVVRVATDAEL 282


>gi|145223684|ref|YP_001134362.1| 5'-3' exonuclease [Mycobacterium gilvum PYR-GCK]
 gi|145216170|gb|ABP45574.1| 5'-3' exonuclease [Mycobacterium gilvum PYR-GCK]
          Length = 321

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 35/277 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF- 65
           L L+DG+S  +R+++  P      DG PVNA+ GF + +  ++   R      H  V+  
Sbjct: 10  LVLLDGASMWFRSYFGVPSSITAPDGRPVNALRGFLDAVSTVIARER-----PHRLVVCR 64

Query: 66  -DYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
            D     +R ++ P YKA+R             ++P+ L PQ+ ++     AFGI     
Sbjct: 65  DDDWRPQWRVDLIPSYKAHRVLEENPADGPDVEEVPDELTPQVDMIMEILDAFGIATAGA 124

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDI 165
             +EADD++ T     E++   V ++S D+DL+QLV     P   LY      K  K   
Sbjct: 125 AHYEADDVLGTLAAAEERD--PVVVVSGDRDLLQLVRDEPVPVRVLYLGKGLAKAVKWGP 182

Query: 166 EHVIKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V   +G+P E+     V L  L GD  D +PG+PGIG KTAA LL ++ +LENI+  A
Sbjct: 183 AEVADTYGVPLERAGSAYVELALLRGDPSDGLPGVPGIGEKTAATLLAQHNSLENIVAAA 242

Query: 222 ---SRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
              +    K  R+ +L  ++    +  +V + TD  +
Sbjct: 243 HDPASTLSKAHRKKLLAASDYIEKAEPVVRVATDAEL 279


>gi|311900125|dbj|BAJ32533.1| putative 5'-3' exonuclease [Kitasatospora setae KM-6054]
          Length = 333

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 142/300 (47%), Gaps = 43/300 (14%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +S  +RA++  P   R   G PVNA+ G  + + +L+ +   + + +     +
Sbjct: 11  RLMLLDTASLYFRAYFGVPDSLRSPQGEPVNAVRGLLDFISRLVHDHGPDQLVACMDADW 70

Query: 66  DYPAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                 +R ++ P YK +R          ++P+ L PQ+P++     A GI  + +  +E
Sbjct: 71  ---RPQWRVDLIPTYKTHRVAEAAQAGEEEVPDTLAPQVPVIEQVLDALGIARVGVPDYE 127

Query: 117 ADDIIATYTY--------------IAEKEGFAVTIISTDKDLMQLVSPTTCL-----YDT 157
           ADD+I T                  A+ +   V I++ D+DL QLV     +        
Sbjct: 128 ADDVIGTLATRATGPVRIVTGDRETADYQPARVLIVTGDRDLFQLVDDARGVQVIYPIKG 187

Query: 158 VKEEKIDIEHVI-KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
           V   ++  E V+  K+G+   +   + AL GD  D +PG+ GIG KTA  L++EYG+L  
Sbjct: 188 VGNAEVITEAVLLDKYGVTGAEYADMAALRGDPSDGLPGVKGIGEKTATQLIREYGDLAG 247

Query: 217 ILINASRIKQK---KRRENILEYAETARLSRKLVMLRTDVPI--------TIPLEHLILE 265
           I   A+    K    RR+N+LE A    ++  +V + TDVP+        T PL+ + LE
Sbjct: 248 IRTAAADPLSKLTPARRKNLLEGAAYLDVAPTVVRVATDVPLPAFDPTLPTEPLDPMTLE 307


>gi|291086231|ref|ZP_06571407.1| exodeoxyribonuclease IX [Citrobacter youngae ATCC 29220]
 gi|291068608|gb|EFE06717.1| exodeoxyribonuclease IX [Citrobacter youngae ATCC 29220]
          Length = 226

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 115/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A    +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 15  SQPTHAVAVFDDEARNSGWRHQRLPDYKAGRPPMPDELHQEMPALRAAFEQRGVCCWVSS 74

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 75  GNEADDLAATLAVKVCQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIEKEFG 134

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P+++     L G     +PG+ GIG K+A  LL ++  LE +  +  ++ +K R++ +
Sbjct: 135 VQPQQLPDYWGLAGIGSSKVPGVAGIGPKSATQLLTQFPTLEALYEHLDKVPEKWRKK-L 193

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
            E+ E A L R +  L+TD+ I   L+ L L
Sbjct: 194 EEHREMAFLCRDIARLQTDLHIDGNLQQLRL 224


>gi|204928172|ref|ZP_03219372.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322494|gb|EDZ07691.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 251

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPTLRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 160 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 219 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|56414921|ref|YP_151996.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363849|ref|YP_002143486.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|226733937|sp|B5BF27|XNI_SALPK RecName: Full=Protein Xni
 gi|269849727|sp|Q5PEL3|XNI_SALPA RecName: Full=Protein Xni
 gi|56129178|gb|AAV78684.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095326|emb|CAR60884.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 251

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 160 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 219 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|161615902|ref|YP_001589868.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167993467|ref|ZP_02574561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231064|ref|ZP_02656122.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168261881|ref|ZP_02683854.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168820305|ref|ZP_02832305.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194471810|ref|ZP_03077794.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197247516|ref|YP_002147882.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197262698|ref|ZP_03162772.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|238909751|ref|ZP_04653588.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|189030094|sp|A9N2I4|XNI_SALPB RecName: Full=Protein Xni
 gi|226733931|sp|B5F4R7|XNI_SALA4 RecName: Full=Protein Xni
 gi|269849497|sp|Q8ZMC9|XNI_SALTY RecName: Full=Protein Xni
 gi|161365266|gb|ABX69034.1| hypothetical protein SPAB_03696 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194458174|gb|EDX47013.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197211219|gb|ACH48616.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240953|gb|EDY23573.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205328455|gb|EDZ15219.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334446|gb|EDZ21210.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342928|gb|EDZ29692.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349043|gb|EDZ35674.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|312913993|dbj|BAJ37967.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087397|emb|CBY97162.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321225653|gb|EFX50707.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 251

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 160 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 219 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|16766277|ref|NP_461892.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16421523|gb|AAL21851.1| exonuclease IX, 5'-3' exonuclease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261248108|emb|CBG25943.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995111|gb|ACY89996.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159532|emb|CBW19051.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|323131329|gb|ADX18759.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332989842|gb|AEF08825.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 271

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 60  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 120 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 179

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 180 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKK-L 238

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 239 ETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 269


>gi|283969363|gb|ADB54415.1| DNA polymerase I [Leptospira interrogans]
 gi|283969375|gb|ADB54421.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969377|gb|ADB54422.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969379|gb|ADB54423.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969381|gb|ADB54424.1| DNA polymerase I [Leptospira interrogans]
 gi|283969383|gb|ADB54425.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969385|gb|ADB54426.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969387|gb|ADB54427.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969389|gb|ADB54428.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969391|gb|ADB54429.1| DNA polymerase I [Leptospira interrogans serovar IH CF1]
 gi|283969393|gb|ADB54430.1| DNA polymerase I [Leptospira interrogans]
 gi|283969395|gb|ADB54431.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969399|gb|ADB54433.1| DNA polymerase I [Leptospira interrogans]
 gi|283969401|gb|ADB54434.1| DNA polymerase I [Leptospira interrogans]
 gi|283969403|gb|ADB54435.1| DNA polymerase I [Leptospira interrogans]
 gi|283969405|gb|ADB54436.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969407|gb|ADB54437.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969422|gb|ADB54444.1| DNA polymerase I [Leptospira interrogans]
 gi|283969424|gb|ADB54445.1| DNA polymerase I [Leptospira interrogans]
 gi|283969426|gb|ADB54446.1| DNA polymerase I [Leptospira interrogans]
 gi|283969428|gb|ADB54447.1| DNA polymerase I [Leptospira interrogans]
 gi|283969430|gb|ADB54448.1| DNA polymerase I [Leptospira interrogans]
 gi|283969432|gb|ADB54449.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969436|gb|ADB54451.1| DNA polymerase I [Leptospira interrogans]
 gi|283969438|gb|ADB54452.1| DNA polymerase I [Leptospira interrogans]
 gi|283969444|gb|ADB54455.1| DNA polymerase I [Leptospira interrogans]
 gi|283969446|gb|ADB54456.1| DNA polymerase I [Leptospira interrogans]
 gi|283969450|gb|ADB54458.1| DNA polymerase I [Leptospira interrogans]
 gi|283969452|gb|ADB54459.1| DNA polymerase I [Leptospira interrogans]
 gi|283969454|gb|ADB54460.1| DNA polymerase I [Leptospira interrogans]
          Length = 144

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 95/146 (65%), Gaps = 2/146 (1%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     KT
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDDLKLRIVKKT 60

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +TG + T  + LE++  G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+ 
Sbjct: 61  QTG-FSTDHEVLEEL-AGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQ 731
               TGRL+S +PNLQNIPI+   G+
Sbjct: 119 TIAATGRLSSTDPNLQNIPIRDREGR 144


>gi|200388894|ref|ZP_03215506.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605992|gb|EDZ04537.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 251

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 3/211 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +
Sbjct: 160 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKK-L 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             + E A L R +  L+TD+ I   L+ L L
Sbjct: 219 ETHREMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|291300659|ref|YP_003511937.1| 5'-3' exonuclease [Stackebrandtia nassauensis DSM 44728]
 gi|290569879|gb|ADD42844.1| 5'-3' exonuclease [Stackebrandtia nassauensis DSM 44728]
          Length = 303

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/265 (31%), Positives = 132/265 (49%), Gaps = 23/265 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVD     YR+FY  P   R  DG  +NA+ GF + L  L++N     +A   AV  D
Sbjct: 2   LVLVDAPGLWYRSFYGLPSSLRGPDGTQINAVRGFIDGLATLIRNHNATGLAC--AVDND 59

Query: 67  Y-PAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + PA  +R ++ P YK +R       + P+ L  Q+ ++     A+GIP I + G+EADD
Sbjct: 60  WRPA--WRVDLLPSYKTHRLADNGGEEEPDALPHQVAIITQLLTAWGIPVIGVDGYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLV---SPTTCLY---DTVKEEKIDIEHVIKKWG 173
           ++AT   +A      V + + D+DL QL+   +    +Y      K E +D   ++ + G
Sbjct: 118 VLAT---LATTTKGPVGVATGDRDLFQLIDDDNDIRVIYFGRGIAKAETLDDAALVARHG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRR 230
           + P++ V    L GD  D +PG+ GIG KTAA L+  +GNL +    A+        + R
Sbjct: 175 VHPDQYVDFAVLRGDPSDGLPGVKGIGDKTAATLITTHGNLTDARAAAADPATTMAPRVR 234

Query: 231 ENILEYAETARLSRKLVMLRTDVPI 255
           + + E  E    + K+V    D P+
Sbjct: 235 KALTESGEYLDAAVKVVRTANDAPV 259


>gi|260767258|ref|ZP_05876199.1| probable exodeoxyribonuclease IX [Vibrio furnissii CIP 102972]
 gi|260617766|gb|EEX42944.1| probable exodeoxyribonuclease IX [Vibrio furnissii CIP 102972]
 gi|315180889|gb|ADT87803.1| exonuclease IX [Vibrio furnissii NCTC 11218]
          Length = 258

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 129/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P             IA   +   + LQ    E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---------DETDIARTIDTTSRTLQRIIGEADPTHIIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKA R  +P+ L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLQDRGWRAEVLPGYKAGRKPMPQPLQQGLDQIQQAWWELGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   +  ++G+ P ++    
Sbjct: 115 LATKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDAPFIENEFGVKPTQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L +Y ++++    AS     K R+ + E+ E AR+ 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQYPDIDSAY--ASDDLPAKYRKKLDEHIELARVC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 233 KQVAGLKTDIELGFNLQDI 251


>gi|156630380|sp|Q6LN06|XNI_PHOPR RecName: Full=Protein Xni
          Length = 258

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 130/259 (50%), Gaps = 17/259 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP--VNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R   A P       G P   N     C  L K+++ S      SH   
Sbjct: 4   HLVVIDALNLIRRVHAAQP-------GEPDVKNTARVCCQALSKIIKFSE----PSHIVA 52

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD+      +R ++ P YK  R  +P  L   + +++ A    GI ++   G EADD++
Sbjct: 53  VFDHHGDDRGWRAKLLPHYKEGRKPMPPELQAGMEIIQDAFMDLGIDSLLSDGDEADDLV 112

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT           VTIISTDK   QL+SPT  + D  ++  +D   V K++G+ PE++  
Sbjct: 113 ATLALKVASRHQQVTIISTDKGYCQLLSPTLRVRDYFQQRWLDSPFVEKEYGVKPEQLPD 172

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGIPGIG K A  LL  Y +L+ IL  A  +  K +++ I ++ E+A 
Sbjct: 173 YWGLAGISSSKIPGIPGIGPKAALELLSLYPDLDTIL-QAEDLPTKWQKK-ITKHRESAE 230

Query: 242 LSRKLVMLRTDVPITIPLE 260
            S+K+  L+TD+ +   L+
Sbjct: 231 ASKKVASLKTDLTLGFNLQ 249


>gi|256391638|ref|YP_003113202.1| 5'-3' exonuclease [Catenulispora acidiphila DSM 44928]
 gi|256357864|gb|ACU71361.1| 5'-3' exonuclease [Catenulispora acidiphila DSM 44928]
          Length = 315

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 135/278 (48%), Gaps = 30/278 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D  +  +RAF+  P   R  DG+ VNA+ G    +  L+   + + + + F   + 
Sbjct: 8   LMVLDTPTLYFRAFFGVPDTIRSPDGMVVNAVRGTVESVSYLINTYKPDRLVACFDADWR 67

Query: 67  YPAVTFRNEIYPDYKANR--------------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
            PA  FR E  P YKA+R               ++P++L PQ+P++  A  A GI   E 
Sbjct: 68  -PA--FRVEAIPSYKAHRVLEEAPAGGAGVDVEEVPDLLSPQVPVIEAALDALGIARAEA 124

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIE 166
            GFEADD++AT     +  G  V +++ D+DL QLV  T  +          K E +  +
Sbjct: 125 PGFEADDVLATLAERWDGRG-PVDVVTMDRDLYQLVDDTREIRVLNIGKGVTKLEVVTDQ 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA---SR 223
            + +K+GI   +     AL GD  D +PG+ GIG KTAA L+ +Y +L  +   A   + 
Sbjct: 184 ILREKYGITGGEYADFAALRGDPSDGLPGVSGIGEKTAAALISQYKDLAGVRAAAEDPAS 243

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
             +  +R+ I E A     +  +V +  D P+   +EH
Sbjct: 244 TLKPAQRKRIAEAAGYLDAAPTVVRVVRDAPV---VEH 278


>gi|307331453|ref|ZP_07610570.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Streptomyces
           violaceusniger Tu 4113]
 gi|306882896|gb|EFN13965.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Streptomyces
           violaceusniger Tu 4113]
          Length = 310

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 140/281 (49%), Gaps = 45/281 (16%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY- 67
           L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R + + +   + FD+ 
Sbjct: 2   LLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDDLVA--CMDFDWR 59

Query: 68  PAVTFRNEIYPDYKANR--------------------PKIPEMLLPQLPLVRLATQAFGI 107
           PA  +R  +   YKA+R                     ++P+ L PQ+P++     A GI
Sbjct: 60  PA--WRVALISTYKAHRVAEEAPEGAGVDQEGAGVDQEEVPDTLSPQVPVIDEVLDAIGI 117

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKE---- 160
             +    +EADD+I T T  A      V I++ D+DL QLV        LY  VK     
Sbjct: 118 ARVGAADYEADDVIGTLTGRASG---PVDIVTGDRDLFQLVDDERGVRVLY-PVKGVGTL 173

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-- 218
           + +D  +V +K+G+     V L  L GD  D +PG+PG+G KTAA LL  +G+L  I+  
Sbjct: 174 QLVDESYVREKYGVDGRGYVDLALLRGDPSDGLPGVPGVGEKTAAKLLAAHGDLAGIMAA 233

Query: 219 INASRIK----QKKRRENILEYAETARLSRKLVMLRTDVPI 255
           ++    K    Q+KR +    Y E A    K+V + +DV +
Sbjct: 234 VDDPTAKLTPTQRKRLDEARPYIEVA---PKVVRVASDVAL 271


>gi|90580953|ref|ZP_01236754.1| exonuclease IX [Vibrio angustum S14]
 gi|90437831|gb|EAS63021.1| exonuclease IX [Vibrio angustum S14]
          Length = 258

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 128/260 (49%), Gaps = 15/260 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP-VNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           HL ++D  + I R   A P       G P V A A  C    + L+   K S  +H   +
Sbjct: 4   HLVVIDALNLIRRVHAARP-------GEPDVKATAETCC---RALKKIIKISQPTHIVAV 53

Query: 65  FDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           FD+      +R E+ P YK  R  +P+ L+  + +++ A    GI ++   G EADD++A
Sbjct: 54  FDHHGDDRGWRAELLPHYKEGRKPMPDELMTGMDIIQDAFMEIGIDSLLSDGDEADDLVA 113

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T        G  VTIISTDK   QL+ PT  + D  +E  +D   + K++G+ P+K+   
Sbjct: 114 TLALKVASRGEQVTIISTDKGYCQLLQPTLRIRDYFQERWLDSAFIEKEYGLAPDKLTDY 173

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L G S   IPGI GIG K A  LL  Y  LE IL  A+     K ++ I  + + A  
Sbjct: 174 WGLAGISSSKIPGITGIGPKAAVELLSLYPTLETIL--AADDLPAKWKKKIDGHHDVALA 231

Query: 243 SRKLVMLRTDVPITIPLEHL 262
           S+ +  L+TD+ +   L+ +
Sbjct: 232 SKAVSSLKTDLELGFNLQDI 251


>gi|283969353|gb|ADB54410.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
 gi|283969355|gb|ADB54411.1| DNA polymerase I [Leptospira interrogans]
 gi|283969357|gb|ADB54412.1| DNA polymerase I [Leptospira interrogans serovar Australis]
 gi|283969359|gb|ADB54413.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969361|gb|ADB54414.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969365|gb|ADB54416.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969367|gb|ADB54417.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969369|gb|ADB54418.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969371|gb|ADB54419.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969373|gb|ADB54420.1| DNA polymerase I [Leptospira interrogans serovar Bataviae]
 gi|283969397|gb|ADB54432.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969409|gb|ADB54438.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
 gi|283969413|gb|ADB54440.1| DNA polymerase I [Leptospira interrogans serovar Wolffi]
 gi|283969434|gb|ADB54450.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969456|gb|ADB54461.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
          Length = 144

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 95/146 (65%), Gaps = 2/146 (1%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     KT
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDNLKLRIVKKT 60

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +TG + T  + LE++  G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+ 
Sbjct: 61  QTG-FSTDHEVLEEL-VGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQ 731
               TGRL+S +PNLQNIPI+   G+
Sbjct: 119 TIAATGRLSSTDPNLQNIPIRDREGR 144


>gi|168236020|ref|ZP_02661078.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737620|ref|YP_002115923.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|226733938|sp|B4TUJ1|XNI_SALSV RecName: Full=Protein Xni
 gi|194713122|gb|ACF92343.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197290862|gb|EDY30216.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322614219|gb|EFY11151.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620966|gb|EFY17824.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624029|gb|EFY20863.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628231|gb|EFY25020.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633350|gb|EFY30092.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636072|gb|EFY32780.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639409|gb|EFY36097.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322643728|gb|EFY40280.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648841|gb|EFY45288.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655166|gb|EFY51476.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658003|gb|EFY54271.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664105|gb|EFY60304.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667073|gb|EFY63245.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673122|gb|EFY69229.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677887|gb|EFY73950.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681062|gb|EFY77095.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685658|gb|EFY81652.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194797|gb|EFZ79984.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196548|gb|EFZ81696.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323205038|gb|EFZ90021.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207760|gb|EFZ92706.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212687|gb|EFZ97504.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323214829|gb|EFZ99577.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222559|gb|EGA06924.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226438|gb|EGA10646.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230682|gb|EGA14800.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234967|gb|EGA19053.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239005|gb|EGA23055.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244637|gb|EGA28643.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247252|gb|EGA31218.1| flap endonuclease-like protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251785|gb|EGA35650.1| flap endonuclease-like protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257472|gb|EGA41162.1| flap endonuclease-like protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263257|gb|EGA46794.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267508|gb|EGA50992.1| flap endonuclease-like protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269088|gb|EGA52543.1| flap endonuclease-like protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 251

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 115/212 (54%), Gaps = 5/212 (2%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++  
Sbjct: 160 VLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKK-- 217

Query: 234 LE-YAETARLSRKLVMLRTDVPITIPLEHLIL 264
           LE + E A L R +  L+TD+ I   L+ L L
Sbjct: 218 LEMHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|54310102|ref|YP_131122.1| exonuclease IX [Photobacterium profundum SS9]
 gi|46914541|emb|CAG21320.1| putative exodeoxyribonuclease IX [Photobacterium profundum SS9]
          Length = 278

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 131/261 (50%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP--VNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R   A P       G P   N     C  L K+++ S      SH   
Sbjct: 24  HLVVIDALNLIRRVHAAQP-------GEPDVKNTARVCCQALSKIIKFSE----PSHIVA 72

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD+      +R ++ P YK  R  +P  L   + +++ A    GI ++   G EADD++
Sbjct: 73  VFDHHGDDRGWRAKLLPHYKEGRKPMPPELQAGMEIIQDAFMDLGIDSLLSDGDEADDLV 132

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT           VTIISTDK   QL+SPT  + D  ++  +D   V K++G+ PE++  
Sbjct: 133 ATLALKVASRHQQVTIISTDKGYCQLLSPTLRVRDYFQQRWLDSPFVEKEYGVKPEQLPD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGIPGIG K A  LL  Y +L+ IL  A  +  K +++ I ++ E+A 
Sbjct: 193 YWGLAGISSSKIPGIPGIGPKAALELLSLYPDLDTIL-QAEDLPTKWQKK-ITKHRESAE 250

Query: 242 LSRKLVMLRTDVPITIPLEHL 262
            S+K+  L+TD+ +   L+ +
Sbjct: 251 ASKKVASLKTDLTLGFNLQDI 271


>gi|309813094|ref|ZP_07706818.1| 5'-3' exonuclease, SAM domain protein [Dermacoccus sp. Ellin185]
 gi|308432898|gb|EFP56806.1| 5'-3' exonuclease, SAM domain protein [Dermacoccus sp. Ellin185]
          Length = 308

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 27/256 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RAFY  P  +   DG P NA+ GF +M+  LL       I + +   + 
Sbjct: 6   LMLLDSASLYFRAFYGVPERTAA-DGTPNNALRGFADMIATLLTTYEPTDIVACWDNDWR 64

Query: 67  YPAVTFRNEIYPDYKANR--------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            PA  FR E  P YKA+R         + PE L PQ+PL+R   +  GI  + + G+EAD
Sbjct: 65  -PA--FRVEAIPSYKAHRVQEGSDVAEESPENLTPQVPLIRELLELAGITRLGVDGYEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-------TCLYDTVKEEKIDIEHVIKK 171
           D+I T T+     G  V +++ D+DL QLV          T        + +D   ++ +
Sbjct: 122 DVIGTLTHRFRDAG-PVDVVTGDRDLFQLVDDAMGVRVIYTAKGGVRAPDLVDESFLMAR 180

Query: 172 WGIPPEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL----ENILINASRIK- 225
           +G+   +    +  + GD+ D +PG+ GIG KTAA L+ E+G+L    + I     RIK 
Sbjct: 181 YGVATGRAYADMAVMRGDTSDGLPGVAGIGEKTAAALIAEFGSLAAIRDAIASGDPRIKG 240

Query: 226 -QKKRRENILEYAETA 240
            ++ R E   +Y + A
Sbjct: 241 ARRTRLEAASDYLDVA 256


>gi|312884937|ref|ZP_07744627.1| exonuclease IX [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367414|gb|EFP94976.1| exonuclease IX [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 265

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 131/260 (50%), Gaps = 15/260 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVN-AIAGFCNMLWKLLQNSRKESIASHFAVI 64
           HL ++D  + I R   A P      D   +N  I   C  L +++     ES  +H   +
Sbjct: 4   HLVIIDALNLIRRVHSAQP------DPNDINRTITTTCRTLRRII----SESEPTHVLAV 53

Query: 65  FD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +D       +R E+   YKANR  +PE LL  L  ++ A    GI ++  +G EADD+IA
Sbjct: 54  YDNHIQHRGWRAELLTSYKANRKPMPEPLLVGLESIQEAWWEIGIDSLVSEGDEADDLIA 113

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T      +    VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++   
Sbjct: 114 TLAMKVARRHEKVTIISTDKGYCQLLSPTLQIRDYFQNRWLDEPFIEREFGVRPSQLSDY 173

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             + G S   +PG+PG+G K A  +L ++ N+E+ +   S     K R+ + +  E A +
Sbjct: 174 WGIVGISSSQVPGVPGLGPKAAKEILAQFVNIESAV--QSEELAGKYRKKLTDNIELATV 231

Query: 243 SRKLVMLRTDVPITIPLEHL 262
            +K+ MLRTD+ +   L+ +
Sbjct: 232 CKKVAMLRTDIKLGFNLQDI 251


>gi|297581282|ref|ZP_06943206.1| exodeoxyribonuclease IX [Vibrio cholerae RC385]
 gi|297534598|gb|EFH73435.1| exodeoxyribonuclease IX [Vibrio cholerae RC385]
          Length = 283

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDAIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHKEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVNPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGQKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 257 KQVSALKTDIELGFNLQDI 275


>gi|26553652|ref|NP_757586.1| DNA polymerase I: 5'-3' exonuclease [Mycoplasma penetrans HF-2]
 gi|26453658|dbj|BAC43990.1| DNA polymerase I: 5'-3' exonuclease [Mycoplasma penetrans HF-2]
          Length = 292

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 126/254 (49%), Gaps = 22/254 (8%)

Query: 9   LVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI- 64
           L+DG+S ++RA+Y T        K++  P NAI     +++KLL  +  +     +AVI 
Sbjct: 7   LIDGNSLMFRAYYGTINQVDYYIKNNLEPTNAIKTMMLIIFKLLTTNNYD-----YAVIA 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+    FR E   DYK  R K P+ L+ Q+  ++     FG+    + G EADD++ + 
Sbjct: 62  FDHKDKNFRKEELEDYKGTRKKTPDHLISQIEPIKEIMSYFGLNVYCVSGIEADDVVGSA 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK---------WGIP 175
           + +         I S+D DL+QLV+        V + K  I+  I           +G+ 
Sbjct: 122 SKLLTDNDVYCEIYSSDNDLLQLVNEKA----NVIQLKKGIDETITYTQENFSNLFYGLQ 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P ++   + ++GDS DN+PGI G+G KTA  LLQ+Y +LE+I  N   I     +  +L 
Sbjct: 178 PAQIPDYKGISGDSSDNLPGIKGLGNKTAIDLLQKYKSLESIYENLDFITSNSVKTKLLA 237

Query: 236 YAETARLSRKLVML 249
             E     +KL  +
Sbjct: 238 GKEIGLKCKKLATI 251


>gi|283969442|gb|ADB54454.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
          Length = 144

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 95/146 (65%), Gaps = 2/146 (1%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     KT
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDNLKLRIVKKT 60

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +TG + T  + LE++  G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+ 
Sbjct: 61  QTG-FSTDHEVLEEL-IGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQ 731
               TGRL+S +PNLQNIPI+   G+
Sbjct: 119 TIAATGRLSSTDPNLQNIPIRDREGR 144


>gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum]
          Length = 158

 Score =  113 bits (283), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 96/151 (63%), Gaps = 4/151 (2%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
           ++ L  LK   E+E  LK+  N+KYD L+L RYGI  R F+D ML+SYVL+   + H + 
Sbjct: 9   RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFDDTMLISYVLEPAPARHGMD 68

Query: 507 SIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            +++K+L +T    K++  S K+++  D +   +   +A E+++V L+LWL+L+P     
Sbjct: 69  PLSEKFLGHTPIPYKDVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPG-CAR 127

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            L  VYERL++P++ V+++ME  GI +D+ +
Sbjct: 128 GLTSVYERLERPLLPVLARMEARGITVDRQI 158


>gi|209694283|ref|YP_002262211.1| exonuclease IX [Aliivibrio salmonicida LFI1238]
 gi|226698165|sp|B6EGG3|XNI_ALISL RecName: Full=Protein Xni
 gi|208008234|emb|CAQ78379.1| 5'-3' exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 257

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 126/262 (48%), Gaps = 13/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P    + D   V    G      + +    KE+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---NQDDIQAVVTTTG------RTINRILKETEPTHIIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK +R  +PE L   +  ++ +    GI ++   G EADD++AT
Sbjct: 55  DHHLQDRGWRAEVLPKYKEDRKPMPEALQKGMDAIQESWWKLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTI+STDK   QL+SPT  + D  +   +D   + K++G+ PE++    
Sbjct: 115 LANKVASRNEQVTIVSTDKGYCQLLSPTLRIRDYFQHRWLDEPFIEKEFGLKPEQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   I GIPGIG K A  +L ++  +E    N S    KK R+   EY  TA L 
Sbjct: 175 GLAGISSSKITGIPGIGPKAALEILTQFPTIE--AANESDELPKKYRKKFDEYYNTAILC 232

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           RK+  LRTD+ +   L+ +  E
Sbjct: 233 RKVAGLRTDIELGFNLQDIRYE 254


>gi|90415813|ref|ZP_01223746.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2207]
 gi|90332187|gb|EAS47384.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2207]
          Length = 301

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 127/269 (47%), Gaps = 12/269 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +L+D S +I+R+++  P   +  D G   +A+ GF   L  +L+N   E    H    FD
Sbjct: 4   YLIDSSIYIFRSYFTLPENWQALDSGHSTHAVYGFTAFLLDMLRNKNPE----HLFCAFD 59

Query: 67  YP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                 FR+++  DYKANR    E L  QL   R   +  GI  +    +EADD+I    
Sbjct: 60  ESLGSGFRHQLCSDYKANRELPDEALAFQLNACRQLCRVLGIAEMASDTYEADDLIGAVA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A        +++ DKDLMQL+      +D  K        V K   I  ++M    AL
Sbjct: 120 KNARLANSQPVVVTRDKDLMQLIEAEDLFWDFGKAPPKTQRQVEKDLEIGCQQMADFLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAET 239
           TGDS DNI G+PG+G KTA  LL  + +++ IL +  +++        K  + I  + + 
Sbjct: 180 TGDSSDNIAGVPGVGAKTAKQLLLHFPDIDAILDHLDQLQDLPIRGASKLADKIDNHRDQ 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCN 268
             L+R+L  + TD+     LE +  +  N
Sbjct: 240 LLLARQLTTICTDIAEAPKLEQIAWQGIN 268


>gi|91793909|ref|YP_563560.1| exonuclease IX [Shewanella denitrificans OS217]
 gi|123356631|sp|Q12L39|XNI_SHEDO RecName: Full=Protein Xni
 gi|91715911|gb|ABE55837.1| 5'-3' exonuclease [Shewanella denitrificans OS217]
          Length = 252

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 13/259 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L ++DG + + R   A P  +  ++   +  +A  C  + K  Q        SH  V+
Sbjct: 2   NTLLIIDGLNLVRRIHAAQPDENDINNVQQMTLLA--CTKMLKTHQ-------PSHVIVV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    ++R ++Y DYK  R  +PE L   L  +R      GI ++E +  EADD+IAT 
Sbjct: 53  WDGDEESWRKKLYSDYKKGRKPMPEALKIALVGIRNTLSEAGIHSLEAES-EADDVIATL 111

Query: 125 -TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            T + E  G A+ I+STDK   QLV     ++D  K+  +DI    KK  +   + +   
Sbjct: 112 ATKMVENSGAAI-IVSTDKGFSQLVKKNIQIWDHFKQLFLDISAHEKKLAVEQYQFLDFI 170

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS + IPGI GIG K+AA LL ++  L NI  +   +  K+ ++ + E  E AR+S
Sbjct: 171 ALAGDSGNKIPGIAGIGPKSAADLLNKFRTLANIYNSLDNLGAKQAQK-LAEGREMARIS 229

Query: 244 RKLVMLRTDVPITIPLEHL 262
            KL  L+  +P+ I L+  
Sbjct: 230 YKLGQLQCHMPLEINLKQF 248


>gi|229505497|ref|ZP_04395007.1| hypothetical protein VCF_000705 [Vibrio cholerae BX 330286]
 gi|229513003|ref|ZP_04402469.1| hypothetical protein VCB_000648 [Vibrio cholerae TMA 21]
 gi|229523305|ref|ZP_04412712.1| hypothetical protein VIF_000163 [Vibrio cholerae TM 11079-80]
 gi|229530000|ref|ZP_04419390.1| hypothetical protein VCG_003106 [Vibrio cholerae 12129(1)]
 gi|229333774|gb|EEN99260.1| hypothetical protein VCG_003106 [Vibrio cholerae 12129(1)]
 gi|229339668|gb|EEO04683.1| hypothetical protein VIF_000163 [Vibrio cholerae TM 11079-80]
 gi|229349896|gb|EEO14850.1| hypothetical protein VCB_000648 [Vibrio cholerae TMA 21]
 gi|229357720|gb|EEO22637.1| hypothetical protein VCF_000705 [Vibrio cholerae BX 330286]
          Length = 261

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 6   HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 56

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 57  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 117 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 177 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 234

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 235 KQVSALKTDIELGFNLQDI 253


>gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1]
 gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1]
          Length = 608

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 238/512 (46%), Gaps = 65/512 (12%)

Query: 467 HNIKYDKLVLHR-YGISMRGF----EDIMLMSYVLD-----SGRSSHDIASIAQKWLSYT 516
           HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++   
Sbjct: 95  HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYIDPV 154

Query: 517 RKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             E +K+      +K     DKI       D   + +A    + IL   LL +   +V +
Sbjct: 155 TAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYA--GMDTILVSRLLGKVAPLVPE 212

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI---SKNLLSLEENIYDLSGEKF 621
             H     +  + +V+S +E TG  +D D  +++SA++   S++  ++    Y +     
Sbjct: 213 PSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVARYAYGVD---- 268

Query: 622 NLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +++S ++L D L  T +K     +T TG+ +  A+ LE +    N + K  +E ++    
Sbjct: 269 SVNSTEKLADGLERTGVKIK--GRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSW 326

Query: 681 KSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           + T+   + N I +R    RVH   +     T R+++  P+ QN+P    +   +RR F+
Sbjct: 327 EKTW---VRNFIERRDANDRVHPGINPLQARTARMSTNNPSAQNLPAGDWM---VRRCFL 380

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P + ++S DY   ELR+LA +A    + Q F+++ D+H+ + A+  GV+        R
Sbjct: 381 ADPGQLMVSVDYQAQELRVLAALANDRTMIQAFKDNADLHQ-ITADASGVD--------R 431

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           +  K +NF+ ++G  P  +A Q  I   EA   I  +   +P +    +  +      GY
Sbjct: 432 KVGKMVNFAYVFGSGPSTIAAQAGITFPEAKRVIAGFEQSYPEVTALSKSLQREAANLGY 491

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V T  GRR+  D    P          AA+N  +Q ++ D+T  A++ +H++     +  
Sbjct: 492 VITPTGRRLPVD----PDRGY------AALNYMVQSTSRDVTASAVLRLHEA----GMTP 537

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            + L IHDE++  VPE E    ++ I   ME+
Sbjct: 538 MIRLVIHDEVLASVPEAEAEATAKEIGRIMEQ 569


>gi|262191485|ref|ZP_06049670.1| probable exodeoxyribonuclease IX [Vibrio cholerae CT 5369-93]
 gi|262032633|gb|EEY51186.1| probable exodeoxyribonuclease IX [Vibrio cholerae CT 5369-93]
 gi|327483634|gb|AEA78041.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 259

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 233 KQVSALKTDIELGFNLQDI 251


>gi|310830967|ref|YP_003966068.1| DNA polymerase I [Paenibacillus polymyxa SC2]
 gi|309250434|gb|ADO60000.1| DNA polymerase I [Paenibacillus polymyxa SC2]
          Length = 347

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 160/348 (45%), Gaps = 68/348 (19%)

Query: 5   NHLFLVDGSSFIYRAFYAT-PLLSRKH----------------DGLPVNAIAGFCNMLWK 47
           N L LVDGSS +  +F+AT PL  +K                 DG+  N +    + L K
Sbjct: 2   NSLLLVDGSSLLTTSFFATAPLDYQKAKTPEEMAKTSKKLMQVDGVYTNGVYTMIDKLLK 61

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +++N        + A+ +D    TFR +IYP+YKANR +    L  Q PL +   +  GI
Sbjct: 62  IIKNQN----PKYLAIAWDLNRQTFRRDIYPEYKANRSETRPELKSQYPLAQEVLKEMGI 117

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE 166
                +G+EADDII T +     E   V I++ D+D +QLV+    L Y T K E++  E
Sbjct: 118 AQFIYEGYEADDIIGTLSNKMSSE-VPVYILTKDQDALQLVNERVRLWYMTNKAEEM-YE 175

Query: 167 HV---IKKWGIP------------------PEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
            V   IK++ +P                  P +++  +A+ GD+ DNIPG+ G+G  +  
Sbjct: 176 QVGLNIKEFNLPEKVFEFTPLYVHEFYRVEPIQIIDRKAIEGDTSDNIPGVKGVGESSVV 235

Query: 206 LLLQEYGNLENI--------------LINASRIKQK------KRRENILEYAETARLSRK 245
            LL E+ ++E I              +I    IK+       +  +  L   E+A LS++
Sbjct: 236 PLLNEFKSVEGIFDFLENNDELTVKTMIKELGIKRSPVKLLTQSSDTELVGKESALLSKR 295

Query: 246 LVMLRTDVPIT--IPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           L  +  D+     + LE L L+  N  R     K L F  L++ V +T
Sbjct: 296 LATIDVDMACMQDVKLEDLYLQ-INEERKKDIFKRLAFNSLLDSVEST 342


>gi|71893931|ref|YP_279377.1| putative 5'-3' exonuclease [Mycoplasma hyopneumoniae J]
 gi|71852058|gb|AAZ44666.1| putative 5'-3' exonuclease [Mycoplasma hyopneumoniae J]
          Length = 294

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 128/228 (56%), Gaps = 11/228 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L+DG+   +++F+     +R     G    A+  F + ++KLL+  R +++  +FA  
Sbjct: 5   ILLIDGTWLTFKSFFGGFHGNRLINSKGEMTFAVHIFFSSVFKLLKLLRPDNV--YFA-- 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+ A T R+++YPDYK  R K P+ L  Q+  ++           E Q FEADD+IA+ 
Sbjct: 61  FDFGAKTPRHQMYPDYKKGRIKPPDSLFFQMDQIKKILSLANFLWSEHQDFEADDLIASL 120

Query: 125 TY-IAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKM 179
              I +K+  A + I S D+DL+QLV   T +   +K   I+I   E+  + +G  P ++
Sbjct: 121 KKKIQKKDNEAEILIFSADQDLLQLVDKKTKVITKIKNNFININTQENFYESYGFSPSQV 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           +  + L GD  DNI  I G+G KTA  LL++Y NL+NIL+N  +I QK
Sbjct: 181 IDFKVLAGDVSDNIKVIEGLGKKTAIKLLEKYKNLDNILLNLDKINQK 228


>gi|108806503|ref|YP_650419.1| exonuclease IX [Yersinia pestis Antiqua]
 gi|123072951|sp|Q1CAP8|XNI_YERPA RecName: Full=Protein Xni
 gi|108778416|gb|ABG12474.1| exodeoxyribonuclease IX [Yersinia pestis Antiqua]
          Length = 230

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 20/229 (8%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             +    + L +L+Q+S+     SH   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CVKACQHALQQLIQHSQ----PSHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++PL+R A    G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
              L G S   IPG+ G+G KTA LLLQ+   LE +  N   I + +RR
Sbjct: 168 YWGLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPECQRR 216


>gi|262276542|ref|ZP_06054351.1| exonuclease IX [Grimontia hollisae CIP 101886]
 gi|262220350|gb|EEY71666.1| exonuclease IX [Grimontia hollisae CIP 101886]
          Length = 258

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P      +   + + A  C    + L    + S  +H   +F
Sbjct: 4   HLVIIDAMNLIRRVHAAQP------NPEDIASTAQVCT---RALHKIIRSSEPTHIVAVF 54

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R ++ P+YK  R  +PE+L   L  ++ A    G+ ++   G EADD+IAT
Sbjct: 55  DHTGQDRGWRAKLVPEYKQGRKPMPEVLQQGLDSIQDAFWEEGVDSLLSSGDEADDMIAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTI+STDK   QL+ PT  + D  ++  +D   + K++ + PE++    
Sbjct: 115 LAIKVANHDGQVTIVSTDKGYCQLLQPTVRIRDYFQQRWLDSPFIEKEFAVQPEQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   + G+PGIG KTA+ LLQ YG LE +   A+   + K ++ +    E A   
Sbjct: 175 GLTGISSSGVSGVPGIGPKTASTLLQRYGTLEQLY--AAEDIEPKWQKKLEGTQELALRC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 233 KQVATLKTDITLGFNLQDI 251


>gi|54020611|ref|YP_116106.1| DNA polymerase I [Mycoplasma hyopneumoniae 232]
 gi|72080909|ref|YP_287967.1| 5'-3' exonuclease [Mycoplasma hyopneumoniae 7448]
 gi|53987784|gb|AAV27985.1| DNA polymerase I [Mycoplasma hyopneumoniae 232]
 gi|71914033|gb|AAZ53944.1| 5'-3' exonuclease [Mycoplasma hyopneumoniae 7448]
          Length = 294

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 128/228 (56%), Gaps = 11/228 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L+DG+   +++F+     +R     G    A+  F + ++KLL+  R +++  +FA  
Sbjct: 5   ILLIDGTWLTFKSFFGGFHGNRLINSKGEMTFAVHIFFSSVFKLLKLLRPDNV--YFA-- 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+ A T R+++YPDYK  R K P+ L  Q+  ++           E Q FEADD+IA+ 
Sbjct: 61  FDFGAKTPRHQMYPDYKKGRIKPPDSLFFQMDQIKKILSLANFLWSEHQDFEADDLIASL 120

Query: 125 TY-IAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKM 179
              I +K+  A + I S D+DL+QLV   T +   +K   I+I   E+  + +G  P ++
Sbjct: 121 KKKIQKKDNEAEILIFSADQDLLQLVDKKTKVITKIKNNFININTQENFYESYGFSPSQV 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           +  + L GD  DNI  I G+G KTA  LL++Y NL+NIL+N  +I QK
Sbjct: 181 IDFKVLAGDVSDNIKVIEGLGKKTAIKLLEKYKNLDNILLNLDKINQK 228


>gi|262172090|ref|ZP_06039768.1| probable exodeoxyribonuclease IX [Vibrio mimicus MB-451]
 gi|261893166|gb|EEY39152.1| probable exodeoxyribonuclease IX [Vibrio mimicus MB-451]
          Length = 259

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQP---------DPNDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ N+E     AS    +K R+ +    E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKEILTQFANIEEAY--ASPELPEKYRKKLEPQIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 233 KQVSALKTDIELGFNLQDI 251


>gi|167470382|ref|ZP_02335086.1| DNA polymerase I [Yersinia pestis FV-1]
          Length = 140

 Score =  112 bits (281), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 5/140 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLLLVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKD 143
               AEK G +V I + DKD
Sbjct: 121 LAREAEKAGHSVLISTGDKD 140


>gi|255744688|ref|ZP_05418639.1| probable exodeoxyribonuclease IX [Vibrio cholera CIRS 101]
 gi|262161179|ref|ZP_06030290.1| probable exodeoxyribonuclease IX [Vibrio cholerae INDRE 91/1]
 gi|158962633|sp|Q9KTK4|XNI_VIBCH RecName: Full=Protein Xni
 gi|255737719|gb|EET93113.1| probable exodeoxyribonuclease IX [Vibrio cholera CIRS 101]
 gi|262028929|gb|EEY47582.1| probable exodeoxyribonuclease IX [Vibrio cholerae INDRE 91/1]
          Length = 259

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   +  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 233 KQVSALKTDIELGFNLQDI 251


>gi|262402754|ref|ZP_06079315.1| probable exodeoxyribonuclease IX [Vibrio sp. RC586]
 gi|262351536|gb|EEZ00669.1| probable exodeoxyribonuclease IX [Vibrio sp. RC586]
          Length = 259

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQP---------DPNDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ N+E     AS    +K R+ +    E AR+ 
Sbjct: 175 GLTGVSSSQIPGVTGIGPKAAKEILIQFANIEEAY--ASPELPEKYRKKLEPQIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 233 KQVCALKTDIELGFNLQDI 251


>gi|88857359|ref|ZP_01132002.1| exonuclease IX [Pseudoalteromonas tunicata D2]
 gi|88820556|gb|EAR30368.1| exonuclease IX [Pseudoalteromonas tunicata D2]
          Length = 258

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 131/262 (50%), Gaps = 11/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R +      S + +    NAI      + KLL    K++I SH   +F
Sbjct: 4   HLLIIDALNLIRRIYAVDSNQSNQEELAIKNAINRVERAVSKLL----KQTIPSHAIAVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA--FGIPAIEIQGFEADDIIAT 123
           D    ++R + YPDYK NR  +PE+L  Q  L   A Q    G+ +   Q  EADD+IAT
Sbjct: 60  D-GENSWRYQFYPDYKLNRKPMPEVL--QTNLTHFAKQLTNLGVISYFPQEDEADDVIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K+    TI+STDK  + L++    +YD    + +  + +  K+ +   ++    
Sbjct: 117 LADKAAKQHINSTIVSTDKGFLPLLNQHIQVYDYFTAQYVSDKTIFDKFSVNKNQLTEFW 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD  ++IPG+ GIG KTA  LL +Y ++ + L  AS    +K R  I        +S
Sbjct: 177 ALAGDPTNDIPGVKGIGKKTAQTLLAQYPSVTHAL--ASTELNEKIRLKIESELNQYVIS 234

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           + L  LR D+P+   L+ L L+
Sbjct: 235 KTLATLRVDLPLGFSLKDLRLK 256


>gi|121588140|ref|ZP_01677887.1| exodeoxyribonuclease IX [Vibrio cholerae 2740-80]
 gi|121729621|ref|ZP_01682114.1| exodeoxyribonuclease IX [Vibrio cholerae V52]
 gi|153216617|ref|ZP_01950544.1| exodeoxyribonuclease IX [Vibrio cholerae 1587]
 gi|153802295|ref|ZP_01956881.1| exodeoxyribonuclease IX [Vibrio cholerae MZO-3]
 gi|153817193|ref|ZP_01969860.1| exodeoxyribonuclease IX [Vibrio cholerae NCTC 8457]
 gi|227081073|ref|YP_002809624.1| exodeoxyribonuclease IX [Vibrio cholerae M66-2]
 gi|298498981|ref|ZP_07008788.1| exodeoxyribonuclease IX [Vibrio cholerae MAK 757]
 gi|121547631|gb|EAX57730.1| exodeoxyribonuclease IX [Vibrio cholerae 2740-80]
 gi|121628598|gb|EAX61076.1| exodeoxyribonuclease IX [Vibrio cholerae V52]
 gi|124114189|gb|EAY33009.1| exodeoxyribonuclease IX [Vibrio cholerae 1587]
 gi|124122177|gb|EAY40920.1| exodeoxyribonuclease IX [Vibrio cholerae MZO-3]
 gi|126512227|gb|EAZ74821.1| exodeoxyribonuclease IX [Vibrio cholerae NCTC 8457]
 gi|227008961|gb|ACP05173.1| exodeoxyribonuclease IX [Vibrio cholerae M66-2]
 gi|297543314|gb|EFH79364.1| exodeoxyribonuclease IX [Vibrio cholerae MAK 757]
          Length = 283

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 257 KQVSALKTDIELGFNLQDI 275


>gi|157148338|ref|YP_001455657.1| exonuclease IX [Citrobacter koseri ATCC BAA-895]
 gi|166918961|sp|A8AP08|XNI_CITK8 RecName: Full=Protein Xni
 gi|157085543|gb|ABV15221.1| hypothetical protein CKO_04156 [Citrobacter koseri ATCC BAA-895]
          Length = 251

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 7/213 (3%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A    +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARNSGWRHQRLPDYKAGRPPMPDELHNEMPAIRAAFEQRGVQCWVSS 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--KRRE 231
           + P+++     L G S   +PG+ GIG K+A  LL ++  LE I  +   + +K  K+ E
Sbjct: 160 VLPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQTLEGIYAHLDEVAEKWCKKLE 219

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
               + E A L R +  L+TD+ I   L+ L L
Sbjct: 220 ---AHKEMAFLCRDIARLQTDLHIDGNLQQLRL 249


>gi|258621626|ref|ZP_05716658.1| exodeoxyribonuclease IX [Vibrio mimicus VM573]
 gi|258586098|gb|EEW10815.1| exodeoxyribonuclease IX [Vibrio mimicus VM573]
          Length = 259

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQP---------DPNDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ N+E     AS    +K R+ +    E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKDILTQFANIEEAY--ASPELPEKYRKKLEPQIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 233 KQVSALKTDIELGFNLQDI 251


>gi|258624377|ref|ZP_05719325.1| exodeoxyribonuclease IX [Vibrio mimicus VM603]
 gi|258583339|gb|EEW08140.1| exodeoxyribonuclease IX [Vibrio mimicus VM603]
          Length = 259

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQP---------DPNDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ N+E     AS    +K R+ +    E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKEILTQFANIEEAY--ASPELPEKYRKKLDPQIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 233 KQVSALKTDIELGFNLQDI 251


>gi|254227030|ref|ZP_04920589.1| exodeoxyribonuclease IX [Vibrio cholerae V51]
 gi|125620434|gb|EAZ48809.1| exodeoxyribonuclease IX [Vibrio cholerae V51]
          Length = 283

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 199 GLTGISSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 257 KQVSALKTDIELGFNLQDI 275


>gi|289209536|ref|YP_003461602.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Thioalkalivibrio sp. K90mix]
 gi|288945167|gb|ADC72866.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Thioalkalivibrio sp. K90mix]
          Length = 315

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 127/263 (48%), Gaps = 11/263 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVD S F++RA++A  L      G P  A+ G  + L + L       IA  F    +
Sbjct: 16  LTLVDSSIFVFRAWFARGL-DPDPLGRPGGAVHGLVHSLCQWLPACAPGPIAFCFD---E 71

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ + P YKA+RP  P  L  Q   +R      G   +    +EADD+IA+   
Sbjct: 72  SLRQGFRHRLDPTYKAHRPPAPPELREQFARIRELLGQLGFRTLAHPEYEADDLIASLAR 131

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
                GF + + S DKDL Q++      L+D  +   +D   + K++ I PE++  + AL
Sbjct: 132 AGRAAGFRIEVKSADKDLTQVILGDQDRLHDPERGTALDRRAIEKRFRIRPEQVADMLAL 191

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAET 239
            GD+ DNIPGI G+G +TAA +L+  G+LE +L +   + +   R        I   ++ 
Sbjct: 192 AGDASDNIPGIEGVGPRTAARILRRLGDLETVLADPQAVARCTIRRADAVAARIAGQSDR 251

Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262
             LSR+L  L   +P    LE L
Sbjct: 252 LCLSRRLTGLVDRIPDLPRLETL 274


>gi|229510833|ref|ZP_04400312.1| hypothetical protein VCE_002240 [Vibrio cholerae B33]
 gi|229517954|ref|ZP_04407398.1| hypothetical protein VCC_001978 [Vibrio cholerae RC9]
 gi|229608516|ref|YP_002879164.1| exonuclease IX [Vibrio cholerae MJ-1236]
 gi|229344669|gb|EEO09643.1| hypothetical protein VCC_001978 [Vibrio cholerae RC9]
 gi|229350798|gb|EEO15739.1| hypothetical protein VCE_002240 [Vibrio cholerae B33]
 gi|229371171|gb|ACQ61594.1| hypothetical protein VCD_003434 [Vibrio cholerae MJ-1236]
          Length = 261

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 6   HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 56

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   +  ++ A    GI ++  +G EADD++AT
Sbjct: 57  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 117 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 177 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 234

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 235 KQVSALKTDIELGFNLQDI 253


>gi|328464756|gb|EGF36076.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 147

 Score =  112 bits (280), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 67/149 (44%), Positives = 86/149 (57%), Gaps = 7/149 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA    L S K  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYVEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS 149
           I T+    EK GF  TI++ D+DL QL S
Sbjct: 119 IGTFAAKGEKVGFTTTIVTGDRDLTQLAS 147


>gi|322831576|ref|YP_004211603.1| 5'-3' exonuclease, SAM-fold domain protein [Rahnella sp. Y9602]
 gi|321166777|gb|ADW72476.1| 5'-3' exonuclease, SAM-fold domain protein [Rahnella sp. Y9602]
          Length = 250

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 137/263 (52%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R  A   +P L         NAI        +L+Q+++     +H   
Sbjct: 4   HLLIIDALNLIRRIHAVQGSPCLITCQ-----NAIG-------QLIQHTQP----THAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    A ++R++  PDYKA R  +P+ L+ ++P ++   +  GI      G EADD+ 
Sbjct: 48  VFDEDDRADSWRHQCLPDYKAGRSPMPDNLVAEMPSLKAGFEGLGIACWHSAGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V + +G+ P+++  
Sbjct: 108 ATLAAKVSSGGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVQETFGVLPQQLTD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+PGIG KTA  LL + G+L+ +  N   + +K R++ + E+ E A 
Sbjct: 168 YWGLAGISSSKIPGVPGIGPKTAVTLLTQTGSLDELYDNLEGVPEKWRKK-LEEHRELAY 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
             +++  L+TDV +   L+ L L
Sbjct: 227 ACKRVSTLQTDVALDGNLQQLRL 249


>gi|167399754|ref|ZP_02305272.1| exodeoxyribonuclease-9 (Exodeoxyribonuclease IX)(Exonuclease IX)
           (Exo IX) [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167050462|gb|EDR61870.1| exodeoxyribonuclease-9 (Exodeoxyribonuclease IX)(Exonuclease IX)
           (Exo IX) [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 218

 Score =  112 bits (280), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 2/184 (1%)

Query: 49  LQNSRKESIASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           LQ   + S  SH   +FD    + ++R++  PDYKA R  +P+ L  ++PL+R A    G
Sbjct: 21  LQQLIQHSQPSHAVAVFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIRQAFNELG 80

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +      G EADD+ AT        G  VTI+STDK   QL++P   + D  ++  +D+ 
Sbjct: 81  VACWHSPGNEADDLAATLVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMP 140

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +++G+ P ++     L G S   IPG+ G+G KTA LLLQ+   LE +  N   I +
Sbjct: 141 FVKQEFGVLPRQLPDYWGLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPE 200

Query: 227 KKRR 230
            +RR
Sbjct: 201 CQRR 204


>gi|153831155|ref|ZP_01983822.1| exodeoxyribonuclease IX [Vibrio cholerae 623-39]
 gi|148873359|gb|EDL71494.1| exodeoxyribonuclease IX [Vibrio cholerae 623-39]
          Length = 283

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 257 KQVSALKTDIELGFNLQDI 275


>gi|90407483|ref|ZP_01215666.1| putative exodeoxyribonuclease IX [Psychromonas sp. CNPT3]
 gi|90311404|gb|EAS39506.1| putative exodeoxyribonuclease IX [Psychromonas sp. CNPT3]
          Length = 261

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 125/256 (48%), Gaps = 5/256 (1%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D  + I R  YA   +  K  G    AI     +    LQ   ++   +H   +FD
Sbjct: 5   LLIIDAMNLI-RRIYA---IQEKQHGESTRAIEETTKIACTALQKLAQQHTPTHVICVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               ++R+++YP YK  R  IP +L   L  ++      G  ++  +  EADD+IAT + 
Sbjct: 61  SHTKSWRHQLYPLYKHGRKPIPTLLKQSLGNIQDQFMKIGFESLLSETDEADDLIATLSD 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              K+     I+STDK   QL+ P   ++D  +    D   V+ K  +  +K+    A+T
Sbjct: 121 KMAKKKQKCIIVSTDKGFYQLLGPQILIFDHFQNSYTDSGRVLNKMALNIDKLCDYWAIT 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           G S   I G+ G+G K A LLL EYGNL+ I  +A   ++ K    + +    ARLS++L
Sbjct: 181 GISSSAIKGVEGVGEKGALLLLHEYGNLQAIF-DAPINEKNKPLCKVKKCEHEARLSQQL 239

Query: 247 VMLRTDVPITIPLEHL 262
           V L+ D+ +   L+ L
Sbjct: 240 VTLKKDINLGFNLQDL 255


>gi|328885742|emb|CCA58981.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 277

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 90/255 (35%), Positives = 131/255 (51%), Gaps = 16/255 (6%)

Query: 7   LFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L LVDG   ++RA+Y  A  ++SR    +    + GF  +L K      + + AS   V+
Sbjct: 7   LLLVDGHYLLHRAWYGFAARIMSRDKT-IDRTGVFGFTALLRKA---QIQHADASEIFVV 62

Query: 65  FDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD       R     DYKA RP     L+  L LV+ A +  G+  IE  G EADD+IAT
Sbjct: 63  FDSEDGSQARAGQDSDYKAQRPAPEPGLIESLALVKNALEHTGVRWIEQDGCEADDVIAT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDT---VKEEKIDIEHVIKKWGIPPEKM 179
               A   G AV I++TDKD +QL++ P+  L +T   ++      EH++ ++G+  E+ 
Sbjct: 123 LATGARAAGRAVDIMTTDKDYLQLLTDPSVRLLNTGLAMERRYTAGEHILPRYGVLAEQW 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              +AL GD  DNIPG+ GIG  TAA LL +   LENI  +  R     + + +L + E 
Sbjct: 183 PDFRALMGDPADNIPGVRGIGATTAARLLADGRQLENIPADELRPAWTSQWQQVLRWREM 242

Query: 240 ARLSRKLVMLRTDVP 254
            +L  K     TD+P
Sbjct: 243 IKLDTK-----TDLP 252


>gi|147674734|ref|YP_001216375.1| exonuclease IX [Vibrio cholerae O395]
 gi|146316617|gb|ABQ21156.1| exodeoxyribonuclease IX [Vibrio cholerae O395]
 gi|227012717|gb|ACP08927.1| exodeoxyribonuclease IX [Vibrio cholerae O395]
          Length = 283

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 116/216 (53%), Gaps = 4/216 (1%)

Query: 49  LQNSRKESIASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           LQ    E++ SH   +FD+      +R E+ P YKANR  +P++L   L  ++ A    G
Sbjct: 62  LQRIINEALPSHMIAVFDHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLG 121

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           I ++  +G EADD++AT           VTIISTDK   QL+SPT  + D  ++  +D  
Sbjct: 122 IDSLLSEGDEADDLVATLACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEP 181

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            + +++G+ P ++     LTG S   IPG+ GIG K A  +L ++ ++E     AS    
Sbjct: 182 FIAQEFGVTPAQLTDYWGLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELP 239

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
            K R+ +  + E AR+ +++  L+TD+ +   L+ +
Sbjct: 240 AKYRKKLDPHIEMARICKQVSALKTDIELGFNLQDI 275


>gi|153823732|ref|ZP_01976399.1| exodeoxyribonuclease IX [Vibrio cholerae B33]
 gi|126518747|gb|EAZ75970.1| exodeoxyribonuclease IX [Vibrio cholerae B33]
          Length = 254

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 129/261 (49%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   +  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ + L
Sbjct: 233 KQVSALKTDIELGFNLQDIRL 253


>gi|85059930|ref|YP_455632.1| exonuclease IX [Sodalis glossinidius str. 'morsitans']
 gi|123518932|sp|Q2NRJ8|XNI_SODGM RecName: Full=Protein Xni
 gi|84780450|dbj|BAE75227.1| exodeoxyribonuclease IX [Sodalis glossinidius str. 'morsitans']
          Length = 250

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 19/262 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD          A  L+ R H     + +A   + L +L+ +       SH   +F
Sbjct: 4   HLLIVD----------ALNLIRRIHAVQGASCLAACGHALSQLILHC----TPSHAVAVF 49

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R++  P YK+ R  IPE L   +P +R       +      GFEADDI AT
Sbjct: 50  DDDERHESWRHQQLPQYKSGRAPIPEDLQALMPAIRAEFNRQSVTCWHASGFEADDIAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VT++STDK   QL+SP+  + D  ++  +D+  V++ +G+ P+++    
Sbjct: 110 LAIKVAAGGHRVTLVSTDKGYCQLLSPSIQIRDYFQKRWLDMPFVMRHFGVQPQQLTDFW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY-AETARL 242
            L G S   IPG+ GIG K+AA L+ E G LE +    +++ +K R    LE+  + A L
Sbjct: 170 GLAGVSSSKIPGVAGIGPKSAAQLISEAGTLEALYQRLAQLPEKWRHR--LEHDRDLAFL 227

Query: 243 SRKLVMLRTDVPITIPLEHLIL 264
            R++V L T V +   L+ L L
Sbjct: 228 CRRIVTLDTAVTLQGNLQQLRL 249


>gi|152996893|ref|YP_001341728.1| 5'-3' exonuclease [Marinomonas sp. MWYL1]
 gi|150837817|gb|ABR71793.1| 5'-3' exonuclease [Marinomonas sp. MWYL1]
          Length = 263

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 4/206 (1%)

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           S+  V+FD    T+R+ +YP+YK  R  + + LL  LP      +   +P + I G+EAD
Sbjct: 52  SYAVVVFDSNGKTWRHRVYPEYKLGRVPMDDTLLESLPDFAKVFRFNHLPCLRIDGWEAD 111

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEHVIKKWGIPPE 177
           D+IAT    A        I+STDK   QL+     L YD   +   D   V  K+G+ PE
Sbjct: 112 DLIATLAVKAANSNVKSYIVSTDKGFTQLLGNDRILQYDYFAKLGYDKIWVPGKYGVEPE 171

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++    AL GD+ + IPG+ GIG KTA  ++  +  +E I  N     +  R +++L   
Sbjct: 172 QLTDYWALVGDTTNRIPGVKGIGPKTALSIISLFPTVEEIYANLPSFSE--RIQSMLAGG 229

Query: 238 -ETARLSRKLVMLRTDVPITIPLEHL 262
            E   LSR LV L+TDV I + L  L
Sbjct: 230 YEQCLLSRSLVALKTDVEIGVRLSQL 255


>gi|328465063|gb|EGF36337.1| DNA polymerase I [Listeria monocytogenes 1816]
          Length = 141

 Score =  112 bits (279), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/145 (43%), Positives = 80/145 (55%), Gaps = 5/145 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNND-KGVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS 149
           T  AE +G  V II+ D+DL QL S
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLAS 141


>gi|283969411|gb|ADB54439.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
          Length = 144

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 94/146 (64%), Gaps = 2/146 (1%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     K 
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDNLKLRIVKKN 60

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +TG + T  + LE++  G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+ 
Sbjct: 61  QTG-FSTDHEVLEEL-VGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQ 731
               TGRL+S +PNLQNIPI+   G+
Sbjct: 119 TIAATGRLSSTDPNLQNIPIRDREGR 144


>gi|149192512|ref|ZP_01870693.1| exonuclease IX [Vibrio shilonii AK1]
 gi|148833653|gb|EDL50709.1| exonuclease IX [Vibrio shilonii AK1]
          Length = 260

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 113/213 (53%), Gaps = 4/213 (1%)

Query: 55  ESIASHFAVIFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           ES  +H   +FD+      +R +I P+YK NR  +PE L   L  ++ A    GI ++  
Sbjct: 44  ESKPTHIIAVFDHHEQDRGWRADILPEYKQNRKPMPEPLFNGLEKIQDAWWQLGIDSLLS 103

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
           +G EADD++AT           VTIISTDK   Q++SPT  + D  +   +D   V +++
Sbjct: 104 EGDEADDLVATLAVKVASHNEKVTIISTDKGYCQILSPTLQIRDYFQHRWLDAPFVEQEF 163

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ PE++     LTG S   +PG+ G+G K A  +L ++ ++E+     S     K R+ 
Sbjct: 164 GVKPEQLADYWGLTGISSSQVPGVAGVGPKAAKEILNQFTDIESAY--TSDDLAAKYRKK 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           + E+ E AR  +++  L+TD+ +   L+ +  E
Sbjct: 222 LDEHIEMARKCKQVAALKTDIELGFNLQDIRFE 254


>gi|15640914|ref|NP_230545.1| exonuclease IX [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254848033|ref|ZP_05237383.1| exonuclease IX [Vibrio cholerae MO10]
 gi|9655353|gb|AAF94060.1| exodeoxyribonuclease IX [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|254843738|gb|EET22152.1| exonuclease IX [Vibrio cholerae MO10]
          Length = 283

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   +  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 257 KQVSALKTDIELGFNLQDI 275


>gi|308808137|ref|XP_003081379.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
 gi|116059841|emb|CAL55548.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
          Length = 1489

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 198/465 (42%), Gaps = 58/465 (12%)

Query: 552  LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
            LW     K ++  L+    R++ P +  +  ME   +  D   LK+  A +   L  LEE
Sbjct: 1001 LWEECEAKDLIRALI----RVEMPFVAPIVAMETVKVPFDPRRLKEEIAAMDDRLKKLEE 1056

Query: 612  ----------------------NIYDLSG--EKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
                                  N Y +    E   L+ P    ++ FTK  + S AK  T
Sbjct: 1057 YAKKQKWLDPLHPANLRRAFTDNAYLVKCLYEHLKLTPPAG-SELAFTK-DWVSNAKECT 1114

Query: 648  GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               KTT + + + +    P++  ILE R + K + T+AD L     + +      YS+  
Sbjct: 1115 VSTKTTYEKVHEQSGHMFPLL--ILEHRSVFK-RLTFADVLLGMYGE-SMDSRIRYSIHQ 1170

Query: 708  TM--TGRLASLEPNLQNIPIKTDLGQ----------KIRRAFISPPTKKLISADYSQIEL 755
            T    GRL  +EPN  ++                   +R AF  P  +  +  DYS +EL
Sbjct: 1171 TNHDCGRLTHIEPNFHSMAHDMKCVDAFDGLDAPVISVRSAFTPPADRVFLRVDYSHLEL 1230

Query: 756  RILAHIAKITPLYQVFENSL------DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
            R++AH +    L  + +N        D   M+A +  GV +  VS   R+  K + + I+
Sbjct: 1231 RVMAHFSGDQTLIALLQNPEPVNAHDDPFTMLACKWRGVPLNAVSVDERQRVKNLVYGIL 1290

Query: 810  YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG---YVETIFGRR 866
            YG    RLA +LR+   +A   +       P +  + +       +      V TI  R 
Sbjct: 1291 YGSGVKRLARELRLSDEKAKILVDELKSMLPTLMNWRDDVVARAIEEKPIPRVTTISSRH 1350

Query: 867  IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL--ATKMLLQI 924
             ++ E+ S     R+  ER A+N   QGSAADI + A++ V ++L    L    +++L +
Sbjct: 1351 RYFPELLSRSGDERSAAERQAVNTVCQGSAADIFKTAVVLVMETLRAKHLLDRCQLVLTV 1410

Query: 925  HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            HDE VFEV       A++I+ ++ME       NL VPL V  ++ 
Sbjct: 1411 HDEAVFEVNASVAKAAARIVRNTMESVA-GVFNLSVPLPVKAQIG 1454


>gi|300718139|ref|YP_003742942.1| exodeoxyribonuclease IX [Erwinia billingiae Eb661]
 gi|299063975|emb|CAX61095.1| Exodeoxyribonuclease IX [Erwinia billingiae Eb661]
          Length = 253

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 136/263 (51%), Gaps = 17/263 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P        N L +L+++S      +H   +F
Sbjct: 4   HLLIVDALNLI-RRIHAV-------QGSPCQETC--VNALHQLIRHSN----PTHAVAVF 49

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D       +R+++ P YKA R  +P+ L  ++PL+R A  A G+   ++ G EADD+ AT
Sbjct: 50  DDDERHEGWRHQLLPGYKAGRTPMPDSLHEEMPLLRAAFAAAGVACWQVAGEEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL++P   + D  ++  +D+  +  ++G+ P ++    
Sbjct: 110 LACKVAAGGHQATIVSTDKGYCQLLAPAIQIRDYFQKRWLDVPFIDAEFGVSPAQLTDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG K+AA LL+E+G L+ +    + +  K +++ + E+ + A + 
Sbjct: 170 GLAGISSSKIPGVAGIGAKSAAELLREFGTLDAVYQQLASVPTKWQKK-LQEHQQMAEIC 228

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           R++  L+TD+ +   L+ L L D
Sbjct: 229 RQVATLKTDLVLEGNLKELRLPD 251


>gi|86158642|ref|YP_465427.1| 5'-3' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775153|gb|ABC81990.1| 5'-3' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 319

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 130/262 (49%), Gaps = 9/262 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDG+  ++RA ++     R  DG  V A  G    L  LL  + +    +H AV FD
Sbjct: 3   LHLVDGTYELFRAHFSGRPGHRAPDGREVKATLGMAASLVALLHEAGEA--VTHVAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  +FRN+++  YK+    +P  LL QL     A +A G+    +   EADD +AT   
Sbjct: 61  RPIRSFRNDLWAGYKSEE-GVPPELLAQLEAAEDAARALGLVVWSMDALEADDALATAAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQ-LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               E   V I++ DKDL Q L        D ++  ++D   ++ + GI P+ +    AL
Sbjct: 120 RFRDEVEQVRILTPDKDLGQCLRGRRVVQVDRMRGREVDEAALLARRGIQPQSVPDWLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-----ETA 240
            GD+ D IPG+PG G ++A+ LL  YG+LE++  + +R     R    L  A     E A
Sbjct: 180 VGDAADGIPGLPGFGERSASALLAVYGHLEDVPADPARWPAGVRGAAKLGRALEDGREAA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHL 262
            L R+L  L TD P+   LE L
Sbjct: 240 LLYRRLATLVTDAPLPERLEDL 261


>gi|326331442|ref|ZP_08197732.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
 gi|325950698|gb|EGD42748.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
          Length = 302

 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 24/229 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+D +S  +RA++  P + +  DG PVNA+ G    + +L+ +     +   +    D
Sbjct: 1   MLLLDTASLYFRAYFGVPEI-KAEDGTPVNAVRGLLEFISRLVNDYSPTDLVCCWDN--D 57

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +    +R ++ P YKA+R            ++P+ L  Q+P++R    A GI  I   G+
Sbjct: 58  WRP-QWRVDLIPSYKAHRVVEELEAAPDVEEVPDPLQVQVPIIREVLAAAGICVIGADGY 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLYDTV---KEEKIDIEHVI 169
           EADD+I T   +A   G  V +++ D+DL QLV        LY T      + +D + V+
Sbjct: 117 EADDVIGT---LATGAGMPVDVVTGDRDLFQLVDDAAGVRILYPTRGVGDPDLVDEKWVL 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
            K+GI   +      + GD+ D +PG+ G+G KTAA LL++YG+L+ I+
Sbjct: 174 AKYGISAAQYADFATMRGDTSDGLPGVKGVGEKTAAKLLEQYGDLDGIV 222


>gi|154338261|ref|XP_001565355.1| DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062404|emb|CAM42265.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 977

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 141/278 (50%), Gaps = 48/278 (17%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIE 791
           +R  + +PP   L+S D++Q+ELR+LAH++  + L +   +++D+  +V A +  + +I+
Sbjct: 703 LRHLYCAPPGCVLVSFDFNQLELRLLAHLSGDSALQEHLSSNVDVLALVTASVLRLPSID 762

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRI------------------------PRSE 827
            V P+ R+  K I + ++YG+ P  +  ++R                         P S 
Sbjct: 763 HVRPEQRQAVKVIVYGLLYGMGPELMDVRIRKINEEFATAEQQQQHDREGAASSSDPESA 822

Query: 828 AA-DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A D ++R++H +P +  Y+ +T+   + +  VET+ GR+    E ++      N  ++ 
Sbjct: 823 SARDLLRRFYHAYPRVESYLRETRQEAQNSLVVETLSGRKTLLAETDA------NRRKQR 876

Query: 887 AINAPIQGSAADITRRAMISVHKS-------LEDHKLATKMLLQIHDELVFEVPE---EE 936
           AI   +QG AAD+   AM +VH+        L    LA  +++ IHDELV+  P    +E
Sbjct: 877 AIAQAVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA--LVMSIHDELVYATPRVAIDE 934

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +    Q I+    +     + L VPL V+++V +++ E
Sbjct: 935 VVRGVQRILEDQARV----LRLAVPLPVSVRVGHSFGE 968


>gi|261212053|ref|ZP_05926339.1| probable exodeoxyribonuclease IX [Vibrio sp. RC341]
 gi|260838661|gb|EEX65312.1| probable exodeoxyribonuclease IX [Vibrio sp. RC341]
          Length = 225

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 11/229 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQP---------DANDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+  P   +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLPDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFITQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            LTG S   IPG+ GIG K    +L ++ N+E   ++    ++ ++  N
Sbjct: 175 GLTGVSSSQIPGVAGIGPKATKEILNQFSNIEEAYLSPELAEKYRKNSN 223


>gi|15829191|ref|NP_326551.1| DNA polymerase I (POL I) [Mycoplasma pulmonis UAB CTIP]
 gi|17366622|sp|Q98PK2|EX53_MYCPU RecName: Full=5'-3' exonuclease
 gi|14090135|emb|CAC13893.1| DNA POLYMERASE I (POL I) [Mycoplasma pulmonis]
          Length = 297

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 135/261 (51%), Gaps = 12/261 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K     L+DG+  ++R++Y    +S K      + I  F   + K+++N   E+I     
Sbjct: 7   KSEKFLLIDGNYLVHRSYY----VSFKFKNNFRSTIYLFFQTIIKIIKNLNPENIF---- 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    T+R+++  +YK+ R K+ +        +R    +  + +   +G EADD+IA
Sbjct: 59  IAFDEEGGTWRHDLCKEYKSQRSKMEDEFWNIFKAIREILDSINLNSGGFRGHEADDVIA 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T T   + E   + I S DKDL+QL+     + +D   +  I IE+  + + + P+++V 
Sbjct: 119 TITSKFKDEN-QIYIFSRDKDLLQLIDKNVYITHDNELKNLISIENFYQNFQLEPDQIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAET 239
            +A+ GDS DN+ GI GIG K A  LL  + +LE I   + ++ +  K +++ I +  E 
Sbjct: 178 FKAIAGDSSDNLKGIAGIGEKGAKNLLNNFKSLEKIFDSLESTNLISKAQKQKIRDGKEQ 237

Query: 240 ARLSRKLVMLRTDVPITIPLE 260
           A   +K+V L  +VP+ +  E
Sbjct: 238 ALFLKKIVTLNKEVPMKLEKE 258


>gi|221057828|ref|XP_002261422.1| DNA polymerase I [Plasmodium knowlesi strain H]
 gi|194247427|emb|CAQ40827.1| DNA polymerase I, putative [Plasmodium knowlesi strain H]
          Length = 1245

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 154/346 (44%), Gaps = 91/346 (26%)

Query: 667  IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI--- 723
            II N+  +R+  K+   Y ++LP  I K T ++H  ++     TGRL+   PNLQNI   
Sbjct: 804  IINNVKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQVGASTGRLSCEHPNLQNIHSR 863

Query: 724  ----------------------PIKTDLGQKIRRAFISP----PT--KKLISADYSQIEL 755
                                   +  D  ++I    +SP    P+  + LI+ DY Q+EL
Sbjct: 864  FRCAISLKGEDSSSVEVGKDKLTVAEDPDREILTCEMSPHESTPSDGENLITFDYKQMEL 923

Query: 756  RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
             ++A+++    L ++ + S D+    A  +F  N  +V+ ++RR  KT+ + I+YG +  
Sbjct: 924  FVMAYLSFDRQLLKMLQ-SGDVFVETAKVLF--NTTQVTSELRRMTKTVIYGILYGQTEN 980

Query: 816  RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
             LA  L I    A++ I  +F  FP ++ ++E  K  ++    V T+ GR+     I  P
Sbjct: 981  GLARSLLISEGMASNLISNFFQVFPNVYRFMEMQKILLKHMNRVYTLVGRK----RIIEP 1036

Query: 876  KSSIRNINERAAINAPIQGSAADITRRAMISV----------------------HKSLED 913
              +++N   R ++N PIQG AADI + A++S                       H   + 
Sbjct: 1037 --TVKN-KYRISMNTPIQGCAADIMKFALLSCLSIMTHGRGRQVVSNFGSVHEPHNKYDV 1093

Query: 914  HKL----------------------------ATKMLLQIHDELVFE 931
            H +                            ATK++LQ+HDEL+FE
Sbjct: 1094 HSMGHWTQSARLLEINNVSAALLEENKPFLEATKLILQVHDELLFE 1139



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           LL++Y R+++P+I  +S++E  GI +++  ++++    S N L  +E I  L     NL+
Sbjct: 563 LLNIYVRIEQPLILCISEIERRGIFLNKKKIEEIHQSCS-NPLVYKEEIEQLCECNINLN 621

Query: 625 SPKQLGDILFTKL 637
           S KQ+  +++  L
Sbjct: 622 SSKQVASLIYGHL 634


>gi|269958049|ref|YP_003327838.1| 5'-3' exonuclease [Xylanimonas cellulosilytica DSM 15894]
 gi|269306730|gb|ACZ32280.1| 5'-3' exonuclease [Xylanimonas cellulosilytica DSM 15894]
          Length = 313

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 88/276 (31%), Positives = 138/276 (50%), Gaps = 34/276 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RAFY  P   R   G PVNAI G  + +  L+   R E + + +    D
Sbjct: 3   LLLLDTASLYFRAFYGVPDSLRSPRGEPVNAIRGLLDTIAFLVTEHRPERLVACWD---D 59

Query: 67  YPAVTFRNEIYPDYKANR-------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                +R ++   YKA+R              ++P++L PQ+P++    +A GI  I   
Sbjct: 60  DWRPQWRVDLIGSYKAHRVAVPDAGPGGTDVEEVPDLLSPQVPVIASVLEAIGIARIGSP 119

Query: 114 GFEADDIIATYTYIAEKEGFAVT-IISTDKDLMQLV---SPTTCLYDT--VKE-EKIDIE 166
           GFEADD+I T        G   T I++ D+DL QLV   +    LY    V++ + +D  
Sbjct: 120 GFEADDVIGTLVAREVAAGRRPTSIMTGDRDLFQLVDDDAGVRVLYPARGVRDPDVVDQA 179

Query: 167 HVIKKWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-- 223
            + +K+G+P  +    +  L GD  D +PG+ GIG KTAA LL  +G L+ +L  A+R  
Sbjct: 180 RLAEKYGVPSGDAYADMAVLRGDPSDGLPGVVGIGEKTAAGLLARFGTLDGVL--AARDS 237

Query: 224 ----IKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
                  ++RR  + E AE   ++  +V + TD P+
Sbjct: 238 GFGLTPAQQRR--LTEAAEYLTVAPTVVRVATDAPL 271


>gi|153827055|ref|ZP_01979722.1| exodeoxyribonuclease IX [Vibrio cholerae MZO-2]
 gi|149739096|gb|EDM53392.1| exodeoxyribonuclease IX [Vibrio cholerae MZO-2]
          Length = 283

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 127/259 (49%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+       R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGRRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 257 KQVSALKTDIELGFNLQDI 275


>gi|227114674|ref|ZP_03828330.1| exonuclease IX [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 260

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 138/263 (52%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             I    + L +L+QNS+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CITACQHALHQLIQNSQ----PTHAVA 47

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R+++ PDYKA R  +P+ L  +LP ++ A  A G+ +    G EADD+ 
Sbjct: 48  VFDDEDRDTSWRHQLLPDYKAGRTPMPDNLKQELPQIKAAFAAVGVASWHSSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL++P   + D  ++  +D+  + +++G+ P+++  
Sbjct: 108 ATLAAKLSSAGHQATIVSTDKGYCQLLAPYIQIRDYFQKRWLDLPFIEQEFGVSPQQLTD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG K+A  LLQ+ G+LE +      + +K R++ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGPKSATQLLQQAGSLEALYQQLDTVPEKWRKK-LEQHKEMAL 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +SR++  LRTD+ +   L+ L L
Sbjct: 227 ISRQVATLRTDLTLNGNLQQLRL 249


>gi|229525513|ref|ZP_04414918.1| hypothetical protein VCA_003143 [Vibrio cholerae bv. albensis
           VL426]
 gi|229339094|gb|EEO04111.1| hypothetical protein VCA_003143 [Vibrio cholerae bv. albensis
           VL426]
          Length = 292

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 13/257 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 37  HLVIIDALNLIRRVHSAQP---------DPNDITRTAETTTRTLQRIINEAQPSHMIAVF 87

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 88  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 147

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 148 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 207

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E     AS     K R+ +  +   AR+ 
Sbjct: 208 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIAMARIC 265

Query: 244 RKLVMLRTDVPITIPLE 260
           +++  L+TD+ +   L+
Sbjct: 266 KQVSALKTDIELGFNLQ 282


>gi|119960593|ref|YP_947778.1| 5'-3' exonuclease [Arthrobacter aurescens TC1]
 gi|119947452|gb|ABM06363.1| putative 5'-3' exonuclease [Arthrobacter aurescens TC1]
          Length = 316

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 25/230 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RAFY  P   R+ DG PVNA+ G  +M+ +L  +      A+H    +D
Sbjct: 9   LMLLDTASLYFRAFYGVPDSIRRPDGTPVNAVRGLMDMIARLTTDYE----ATHLVACWD 64

Query: 67  YP-AVTFRNEIYPDYKANR-----PK------IPEMLLPQLPLVRLATQAFGIPAIEIQG 114
                 +R ++ P YK++R     P       +P+ L  Q+P++R      GI  + +  
Sbjct: 65  NDWRPQWRVDLIPSYKSHRVAEIVPNGPDVEVVPDPLEAQIPMIRRVLDLAGIAVVGVDD 124

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIK- 170
            EADD++ TY   A +      +++ D+DL QLV        +Y     + +++   +  
Sbjct: 125 HEADDVVGTY---ASQAHIPTDVVTGDRDLFQLVDDDREVRIIYTARGMKNLEVVTDVVV 181

Query: 171 --KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             K+ + P++      L GD+ D +PG+ GIG KTAA LL E+G+LE +L
Sbjct: 182 VGKYRVLPQQYADFATLRGDASDGLPGVAGIGEKTAASLLGEHGSLEGLL 231


>gi|332533975|ref|ZP_08409827.1| exonuclease IX [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036611|gb|EGI73077.1| exonuclease IX [Pseudoalteromonas haloplanktis ANT/505]
          Length = 257

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 126/261 (48%), Gaps = 10/261 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKH--DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL L+D  + I R  YA     + H  + +     A   +   KLL  S     A+H   
Sbjct: 4   HLLLIDALNLI-RRIYAVDANQKHHSDEQMIQTCCARVAHACKKLLDTSN----ATHAIA 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    ++R   Y DYK +R  +P++L   L   + A +  GI   E    EADDIIAT
Sbjct: 59  VFDGDK-SWRYHFYKDYKHSRAPMPQVLKDALLHFKAAIEETGIVVFEPINDEADDIIAT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             + A       T++STDK  +  + P   +YD  K+  +D   + +++G+   K+V   
Sbjct: 118 LAFKASNNQITSTVVSTDKGFLPYIGPYITVYDYFKKLYLDETSIKERFGVEQNKLVDFW 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD  ++IPG+ GIG K+A  ++  Y ++E    + S     K +  +    +   +S
Sbjct: 178 ALAGDKTNDIPGVKGIGTKSAQQIVNNYNSIEQAAEDESLSPSIKTK--LAANMDMYVIS 235

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           + LV LRTD+ +   L+ L L
Sbjct: 236 KHLVSLRTDINLGFSLKQLRL 256


>gi|20095249|gb|AAL85287.2|AF465603_1 polymerase [Vibrio phage 1]
          Length = 786

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 31/295 (10%)

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL-------------ASTMTGRLASLEPN 719
           +W Q  K + TY      H  +     H  Y L             + T+TGRLA+ +P 
Sbjct: 445 KWNQADKAQGTYCTGFLRH-QREDGYFHPSYMLFKGAFDNDKGTDDSGTVTGRLAAKDPA 503

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +Q +P KT L +++R  +  P    ++  D+SQ ELR L  +A    + + +   LD+H 
Sbjct: 504 IQTLPKKTSLAKRLRACYEPPEGYSIVEIDFSQGELRRLCGMANEPAMKKAYREGLDLHV 563

Query: 780 MVAAEIFGVNIEKVS----------PQMRRHAKTINFSIIYGISPFRLATQLR------I 823
           +      G++ E++            + R + K  NF ++YG+S        +      +
Sbjct: 564 ISGGATAGLSYEQMQELEKTDAALYKKYRNYGKPQNFGLLYGMSWGGFQQYAKDQYGVLL 623

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              EA +    +F  +  + ++ E+TK F R NGY+ +  GR  H   INS  +  ++  
Sbjct: 624 SDKEAQNMRFNFFDTYARLPDWHEETKEFARVNGYIRSPLGRVRHLPLINSFDNFYKSQA 683

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           ER A+N+ +Q + +D+    M        D     K +  IHD LV  +  ++++
Sbjct: 684 ERQAVNSGVQSTLSDLLIYGMARFRAQYGDPD-EVKFMAMIHDALVSYIKTDQLS 737


>gi|159037971|ref|YP_001537224.1| 5'-3' exonuclease [Salinispora arenicola CNS-205]
 gi|157916806|gb|ABV98233.1| 5'-3' exonuclease [Salinispora arenicola CNS-205]
          Length = 353

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 19/225 (8%)

Query: 7   LFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           + LVD  S  +RA++  P   +    G PVNA+ GF +ML  L++      +    A+  
Sbjct: 53  IMLVDAPSLYFRAYFGIPESAATAPGGQPVNAVRGFLDMLASLIRTRGPGRMVC--AMDH 110

Query: 66  DYPAVTFRNEIYPDYKANR--PK----IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           D+    +R  + P YKA+R  P+    +P+ L PQ+P++     A GI  +   G+EADD
Sbjct: 111 DW-RPDWRVALLPSYKAHRVAPEGGEVVPDTLSPQVPVILDVLDALGIATVGASGYEADD 169

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---LY---DTVKEEKIDIEHVIKKWG 173
           ++ T +         V ++S D+DL QLV        LY      K    D   V  ++G
Sbjct: 170 VLGTLSVTQPGP---VEVVSGDRDLFQLVDDARGVRLLYIGRGVAKLADCDDTAVRARYG 226

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           +P  +     AL GD  D +PG+PG+G KTAA L+  +G++  +L
Sbjct: 227 VPAARYADFAALRGDPSDGLPGVPGVGEKTAARLVDRHGDISGVL 271


>gi|15614743|ref|NP_243046.1| 5'-3' exonuclease [Bacillus halodurans C-125]
 gi|17366931|sp|Q9KAV6|EX53_BACHD RecName: Full=5'-3' exonuclease
 gi|10174799|dbj|BAB05899.1| 5'-3' exonuclease [Bacillus halodurans C-125]
          Length = 303

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 135/260 (51%), Gaps = 18/260 (6%)

Query: 7   LFLVDGSSFIYRAFYATPL------LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG + + R ++AT        L R   G  +NA+  F   L++L+    +E   +H
Sbjct: 6   LLLIDGFNLLSRGYFATSYGKDEAQLPRNEAGYYINALRVFFPKLFQLI----REHNVTH 61

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV +D     + R + +  YKA+R ++PE L+ Q        +  G+  + I  +EADD
Sbjct: 62  VAVAWDVKREDSHRRQAFAFYKASRGELPEALIEQYETATSLLEEIGVAQVTIPPYEADD 121

Query: 120 IIATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI--DIEHVIKKWGIP 175
            I  +   +  E++G    I S D+DL+QL+S +T    + K + +    E+    + I 
Sbjct: 122 TIGAFACRWAKEEKGHCF-IYSNDRDLLQLLSKSTSQIISSKGKDLIYTEENFRNDYNIS 180

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR--ENI 233
           P + V ++AL GD  DNIPG PG+G K+A  L+Q+YG +E +      +  K +R  + +
Sbjct: 181 PAQWVDVKALLGDKSDNIPGCPGVGEKSALPLIQQYGTIETLYEQIEDLDPKYKRYHKKL 240

Query: 234 LEYAETARLSRKLVMLRTDV 253
           +   E+  +S++L  + T++
Sbjct: 241 VAGEESVIISKELATITTEI 260


>gi|312139733|ref|YP_004007069.1| 5'-3' exonuclease [Rhodococcus equi 103S]
 gi|311889072|emb|CBH48385.1| 5'-3' exonuclease [Rhodococcus equi 103S]
          Length = 314

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 27/237 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RAFYA P      DG PVNA+ GF +M+  L+  ++     S  AV  D
Sbjct: 5   LLLLDGASLWFRAFYALPESMTAPDGRPVNAVRGFTDMVAALITRTQ----PSRLAVCLD 60

Query: 67  YP-AVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                 FR +  P YKA+R          ++P+ L PQ+ ++     A GI      G E
Sbjct: 61  LDWRPQFRVDAVPSYKAHRVAEGSDGSAEEVPDTLTPQVDMIMDVLDAAGIATAGAAGLE 120

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHVI 169
           ADD++ T    A+++   V ++S D+DL+Q+V+        LY      K E    E V 
Sbjct: 121 ADDVLGTLA--AQEKTDTVVVVSGDRDLLQVVADDPVAVRVLYVGRGLAKAELFGPEEVA 178

Query: 170 KKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            K+G+P ++       L  L GDS D +PG+ G+G KTA+ LL  +G+L ++   A+
Sbjct: 179 AKYGVPADRAGAAYAELALLRGDSSDGLPGVKGVGEKTASTLLLRHGSLRDLRAAAA 235


>gi|311742487|ref|ZP_07716296.1| 5'-3' exonuclease [Aeromicrobium marinum DSM 15272]
 gi|311314115|gb|EFQ84023.1| 5'-3' exonuclease [Aeromicrobium marinum DSM 15272]
          Length = 307

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 23/249 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  YRAF+  P   +  DG  VNA+ G  + +  L+     E++ + +    D
Sbjct: 5   LLLLDTASLYYRAFFGLPDTLKAPDGTVVNAVRGLVDFVATLVNREGAEAVVACWD---D 61

Query: 67  YPAVTFRNEIYPDYKANR--------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
                +R E+ P YK  R         + P+ L PQ+PL+  A    GIP +     EAD
Sbjct: 62  DWRPAWRVELVPTYKTQRLADGSSDAEQTPDDLSPQVPLIAEALTLLGIPVVGAPDAEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---LYDT---VKEEKIDIEHVIKKW 172
           D+I T   + ++    V +++ D+DL QLV        LY      K +++D   + +K+
Sbjct: 122 DVIGT---LVDRWDGPVDVVTGDRDLFQLVDDAAAHRVLYTARGVSKLDEVDEAWIREKY 178

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA---SRIKQKKR 229
            I   + V    L GD+ D +PG+ GIG KTAA LL  +G+L+ IL  A   S     + 
Sbjct: 179 DIDAARYVDYAVLRGDASDGLPGVAGIGEKTAAALLGAFGDLDGILAAAQDPSTAITPRP 238

Query: 230 RENILEYAE 238
           R +++E A+
Sbjct: 239 RRSLVEQAD 247


>gi|325676816|ref|ZP_08156489.1| 5'-3' exonuclease [Rhodococcus equi ATCC 33707]
 gi|325552364|gb|EGD22053.1| 5'-3' exonuclease [Rhodococcus equi ATCC 33707]
          Length = 317

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 27/237 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RAFYA P      DG PVNA+ GF +M+  L+  ++     S  AV  D
Sbjct: 8   LLLLDGASLWFRAFYALPESMTAPDGRPVNAVRGFTDMVAALITRTQ----PSRLAVCLD 63

Query: 67  YP-AVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                 FR +  P YKA+R          ++P+ L PQ+ ++     A GI      G E
Sbjct: 64  LDWRPQFRVDAVPSYKAHRVAEGSDGSAEEVPDTLTPQVDMIMDVLDAAGIATAGAAGLE 123

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHVI 169
           ADD++ T    A+++   V ++S D+DL+Q+V+        LY      K E    E V 
Sbjct: 124 ADDVLGTLA--AQEKTDTVVVVSGDRDLLQVVADDPVAVRVLYVGRGLAKAELFGPEEVA 181

Query: 170 KKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            K+G+P ++       L  L GDS D +PG+ G+G KTA+ LL  +G+L ++   A+
Sbjct: 182 AKYGVPADRAGAAYAELALLRGDSSDGLPGVKGVGEKTASTLLLRHGSLRDLRAAAA 238


>gi|213025755|ref|ZP_03340202.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 107

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 1/108 (0%)

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT  G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y
Sbjct: 1   KTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY 59

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
             A T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYS
Sbjct: 60  HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYS 107


>gi|325963149|ref|YP_004241055.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469236|gb|ADX72921.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 311

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 29/230 (12%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD-- 66
           L+D +S  +RAFY  P   R+ DG PVNA+ G  +M+ +L  +      A+H    +D  
Sbjct: 2   LLDTASLYFRAFYGLPDTIRRPDGTPVNAVRGLLDMIARLTTDYH----ATHLIACWDDD 57

Query: 67  -YPAVTFRNEIYPDYKANRPK-----------IPEMLLPQLPLVRLATQAFGIPAIEIQG 114
             P   +R ++ P YKA+R             +P+ L  QLP++R      GI  +    
Sbjct: 58  WRP--QWRVDLLPTYKAHRVAEAVTDAPDVEVVPDALEAQLPMIRHVLGLAGIAVVGAAH 115

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDI---EHV 168
            EADD++ TY   A      V +++ D+DL Q+         +Y     + +++   E V
Sbjct: 116 HEADDVVGTY---ASHASLPVDVVTGDRDLFQVCDDERQVRVIYTARGMKNLEVITEEVV 172

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           + K+ + P++      L GD+ D +PG+ GIG KTAA LL ++G LE +L
Sbjct: 173 VAKYRVLPQQYADYATLRGDASDGLPGVAGIGDKTAASLLLKHGTLEGLL 222


>gi|282598885|ref|YP_003358435.1| N4 gp39-like protein [Pseudomonas phage LIT1]
 gi|259048645|emb|CAZ66294.1| N4 gp39-like protein [Pseudomonas phage LIT1]
          Length = 871

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/487 (23%), Positives = 214/487 (43%), Gaps = 76/487 (15%)

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK------------- 604
           P ++ ++   +Y  L K  +D++ QME+ G+ ++   + +V+ E++              
Sbjct: 362 PIMVQDQQDALYHGLFKDSLDLIIQMELVGMPMNPRKITEVNTELNNLRDGYHNTVMSHP 421

Query: 605 -------------------NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
                               L +++  +   S  +FN +S  Q+  +L   L  P    T
Sbjct: 422 AVAKVEVLIQTSEMEKANAKLKTIQHPLSKFSHIRFNPNSGPQVARLLHEVLDLPVLDVT 481

Query: 646 KTGQWKTTAQDLEQI--NCGDNP---IIKNILEWRQLSKIKSTYADSLPNHINKRTQR-- 698
            T Q  T+   L+++  +    P   +I+ +++   + K+ S +   +P     R +   
Sbjct: 482 ATKQPSTSGGTLKKLLNHIKAEPYKDLIQALMDLGAVEKVISAF---MPAFKAGRMKADG 538

Query: 699 ---VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
              +H  ++L  T++GRL+S +PNLQN+P  +  G+ ++  F +PP      AD++ +E 
Sbjct: 539 MMYLHGSFNLGGTISGRLSSSDPNLQNLPAGSTYGKLVKSLFCAPPGFLFGGADFAALED 598

Query: 756 RILAHIAKITPLYQVFENSLDIHRM------------VAAEIFGVN-IEKVSPQMRRHAK 802
           RI A + +     +V+ +  D H M            +   +  +N I+KV P +R  AK
Sbjct: 599 RINALLTQDPNKIKVYTDGYDGHSMRTFAFWPDKCDGIVDTVDSINSIQKVYPDLRSKAK 658

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           T +F + YG S   L  Q+     EA +    Y   +   +E++    +   + GYVE  
Sbjct: 659 TPHFLLQYGGSWMGLVRQVGFSDEEAQEIETNYNKLYRVSNEWVAGEIDKATKTGYVELA 718

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD------ITRRAMISVHKSLED--H 914
           F  R+    + S    ++   + AA  +   G+A        +T RA +   K L D  +
Sbjct: 719 FNLRLRTPLLGSTILGLKATPKEAAAESRSAGNAVSGQSWGLLTNRAAVEFRKLLLDSPY 778

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL-----PKIN-LRVPLKVNIKV 968
           KL  +++  IHD +    P++   T   + V++    C+     PKIN  RVPL  N+ +
Sbjct: 779 KLKVEIISLIHDAIYVMWPDDPDVT---VWVNNTLCKCMAWQEDPKINDKRVPLGANLDI 835

Query: 969 -SNNWQE 974
              +W+E
Sbjct: 836 FWPSWRE 842


>gi|300786751|ref|YP_003767042.1| potential 5'-3' exonuclease [Amycolatopsis mediterranei U32]
 gi|299796265|gb|ADJ46640.1| potential 5'-3' exonuclease [Amycolatopsis mediterranei U32]
          Length = 314

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 29/228 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RAF+A P   R  DG  VNA+ GF + + ++L + R   +        D
Sbjct: 5   LALLDSASLYFRAFFALPDSMRAADGTQVNAVRGFADTIARILTDRRPARLVCCLDA--D 62

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +    FR ++ P YKA+R            ++P+ L PQ+P++    +AFG    E  G+
Sbjct: 63  WRP-KFRTDLLPSYKAHRVAEETGSGPDVEEVPDTLTPQVPIILDLLEAFGFATAEAAGY 121

Query: 116 EADDIIATYTYIAEKEGF-AVTIISTDKDLMQLV----SPTTCLY---DTVKEEKIDIEH 167
           EADD+I     +A +E    V +I+ D+DL QLV    SP + +Y      K E +    
Sbjct: 122 EADDVIGA---LATREKTDPVEVITGDRDLFQLVRSEPSPASVIYVGKGWAKAEVLGPAE 178

Query: 168 VIKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
           + +++ +P E        +  + GD  D +PG+ GIG KTAA L+ ++
Sbjct: 179 IAERYSLPRETAGPAYADMSVMRGDPSDGLPGVAGIGEKTAAKLITQF 226


>gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12]
 gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12]
          Length = 595

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 28/333 (8%)

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++S  Q  D L  ++      +T++G+ +     L+ ++   N +   I E ++L K  
Sbjct: 269 NVNSTDQCADAL-EEMGVKIKGRTESGKRQVNDDLLQSLSDDGNELAAIIQEAKKLGKWN 327

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            T+     + +     R HTF +     T R++      Q +P    +   +RR F++ P
Sbjct: 328 KTWVAKFLS-VRDSEDRCHTFVNPLQARTSRMSITGIPAQTLPASDWI---VRRCFVADP 383

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            + + S DY   ELR+LA ++    + + F+   D+H+M A           S  +R+  
Sbjct: 384 GQVMASVDYQTQELRVLAALSGDQTMIEAFKTGADLHQMTA---------DASQVVRKVG 434

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K  NF  +YG     LA Q  I    A   +  +   +PG+  Y +K      +NGY+  
Sbjct: 435 KMANFLTVYGGGAKTLAEQAHIDFPTAKRVLDGFAKTYPGVARYSKKLAMEAGRNGYIVN 494

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
             GRR+       P  S R  +   A+N  IQ S+ D+T RA+I +H++         + 
Sbjct: 495 AMGRRL-------PVDSSRTYS---ALNYMIQSSSRDVTCRALIRLHEA----GFTPYLR 540

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           L IHDE+V  +P  +    ++ I   M++   P
Sbjct: 541 LPIHDEVVASLPAGQAEWGAKEIARLMQEEMGP 573


>gi|153005677|ref|YP_001380002.1| 5'-3' exonuclease [Anaeromyxobacter sp. Fw109-5]
 gi|152029250|gb|ABS27018.1| 5'-3' exonuclease [Anaeromyxobacter sp. Fw109-5]
          Length = 298

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 129/261 (49%), Gaps = 10/261 (3%)

Query: 9   LVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
           LVDG+  ++RA ++  + S R   G    A  G    L  LL ++ +    +H AV FD 
Sbjct: 5   LVDGTFELFRAHFSPRMASHRARAGGEAKATVGLVISLLGLLHDAAEG--VTHLAVAFDN 62

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
           P  +FRN+++  YK++   +P  L  Q      A +A G+    ++  EADD +AT    
Sbjct: 63  PIRSFRNDLWAGYKSDE-GVPPELRAQFDAAEEAARALGLVVWSMRELEADDALATGVRR 121

Query: 128 AEKEGFAVTIISTDKDLMQ-LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
                  V I++ DKDL Q L      + D V+  +ID   ++ + GI PE +    AL 
Sbjct: 122 FRDAVEQVRIVTPDKDLGQCLDGGRVVMVDRVRRREIDEGSLLARRGIRPESVPDYLALV 181

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-----RENILEYAETAR 241
           GDS D IPG+PG G  TAA LL  +G+L+ I    +R     R        ++E+ + A 
Sbjct: 182 GDSADGIPGVPGFGPVTAARLLAAHGHLDAIPEQPARWPAGIRGATQLAATLVEHRDAAV 241

Query: 242 LSRKLVMLRTDVPITIPLEHL 262
           L R+L  L +D P+   LE L
Sbjct: 242 LYRRLATLVSDAPLAESLEEL 262


>gi|255023377|ref|ZP_05295363.1| hypothetical protein LmonocyFSL_07860 [Listeria monocytogenes FSL
           J1-208]
          Length = 165

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 8/153 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGVQGFMRHMFAAI----RQSNP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
           D I T T +      A T++S DKDL+QL++PT
Sbjct: 119 DCIGTIT-VQASNTIATTVLSGDKDLLQLIAPT 150


>gi|317124911|ref|YP_004099023.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Intrasporangium calvum DSM 43043]
 gi|315588999|gb|ADU48296.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Intrasporangium calvum DSM 43043]
          Length = 319

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 78/237 (32%), Positives = 116/237 (48%), Gaps = 36/237 (15%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RAFY  P +     G+P NA+ G  +M+  L++ SR     SH A  +D
Sbjct: 8   LLLLDTASLYFRAFYGVPEVVGP-SGVPTNAVRGLLDMIASLVERSR----PSHLAACWD 62

Query: 67  ---YPAVTFRNEIYPDYKANRP-----------------KIPEMLLPQLPLVRLATQAFG 106
               PA  FR E  P YK +R                  ++P+ L  Q+P++  A  A G
Sbjct: 63  NDWRPA--FRVEAIPSYKTHRAAVTSPVDAATAEGVLEEEVPDGLAVQVPIIVDALAALG 120

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV---SPTTCLYDTV----K 159
           +  + + G EADD+I T   +   +   + I++ D+DL QLV   +    LY        
Sbjct: 121 LARVGVDGHEADDVIGTLVTLHRGQ-LPIDIVTGDRDLFQLVDDANEVRVLYTARGGVRS 179

Query: 160 EEKIDIEHVIKKWGIPPEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
            + +D   +  K+GIP       +  L GDS D +PG+ GIG KTAA L+  YG+LE
Sbjct: 180 PDLVDEAFLQDKYGIPDGAAYADMAVLRGDSSDGLPGVAGIGEKTAAKLITTYGSLE 236


>gi|169629277|ref|YP_001702926.1| 5'-3' exonuclease [Mycobacterium abscessus ATCC 19977]
 gi|169241244|emb|CAM62272.1| Probable 5'-3' exonuclease [Mycobacterium abscessus]
          Length = 337

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 131/290 (45%), Gaps = 47/290 (16%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG+S  +R+++  P      DG PVNA+ GF + + +L+   R        AV  D
Sbjct: 14  VLLLDGASLWFRSYFGVPDSITSPDGRPVNAVRGFLDTVSQLITLYRPH----RLAVCLD 69

Query: 67  Y---PAVTFRNEIYPDYKA----------NRP------------KIPEMLLPQLPLVRLA 101
               PA  +R    P YKA           RP            ++P+ L PQ+ ++   
Sbjct: 70  LDWRPA--WRVAAIPSYKAHRVVTDDPLAGRPSDTVGAQTVDIEEVPDELTPQVDMIADI 127

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY-- 155
             AFGI +    GFEADD++ T      ++   V ++S D+DL+Q+V+    P    Y  
Sbjct: 128 LDAFGIASAGAAGFEADDVLGTLAANERRD--PVIVVSGDRDLLQVVADVPVPVRVFYMG 185

Query: 156 -DTVKEEKIDIEHVIKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQE 210
               K        V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL E
Sbjct: 186 RGFAKATLFGPTEVAEQYGVPLARAGAAYAELALLRGDPSDGLPGVPGVGEKTAAKLLAE 245

Query: 211 YGNLENILINASRIKQ---KKRRENILEYAETARLSRKLVMLRTDVPITI 257
           +G+L+ IL  A   K    K  R  +         +  +V +  D P+ +
Sbjct: 246 FGSLDGILTAADDPKSGLAKAVRAKLQAATVYMAAAEPVVRVAVDAPVIV 295


>gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis]
          Length = 471

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 3/180 (1%)

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           RR AK +NFSI YG +   L+   ++   EA D + R++   P I ++ ++ +   +Q G
Sbjct: 290 RRKAKVLNFSIAYGKTAHGLSKDWKVSLEEAKDTVDRWYADRPEIRKWQDEQRRQAQQRG 349

Query: 858 YVETIFGRRIHY-DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           YV TI GRR    D   S   + ++   RAAIN PIQGSAADI   AM+ +++      +
Sbjct: 350 YVTTILGRRRQLPDAALSRNRAAQSHALRAAINTPIQGSAADIATAAMLRINEDEALQSM 409

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK--ACLPKINLRVPLKVNIKVSNNWQE 974
             ++LLQ+HDE++ E P E    A + +V  M      L    L V L V+ K ++ W E
Sbjct: 410 GWRLLLQVHDEVILEGPRETAELARERVVACMRSPFTGLGPKPLLVDLVVDAKHADTWYE 469


>gi|114563941|ref|YP_751455.1| exonuclease IX [Shewanella frigidimarina NCIMB 400]
 gi|122299153|sp|Q07ZE8|XNI_SHEFN RecName: Full=Protein Xni
 gi|114335234|gb|ABI72616.1| 5'-3' exonuclease [Shewanella frigidimarina NCIMB 400]
          Length = 255

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 125/261 (47%), Gaps = 17/261 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK---ESIASHF 61
           N L ++DG + + R     P           N IA       ++L  S+K   +   +H 
Sbjct: 2   NKLLIIDGLNLVRRIHAVLP---------DENDIASVQE---RVLAASKKMLLQHQPTHC 49

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V++D    ++R  +Y DYK  R  +P  L   L  ++       I + + Q  EADD+I
Sbjct: 50  MVVWDGNEPSWRKTLYSDYKKGRKPMPTALSDGLVNIKATLAEHDINSFDAQS-EADDVI 108

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT           V I+STDK   QL +    L+D   ++  D+E   KK GI   +M+ 
Sbjct: 109 ATIAMKMISNKGEVIIVSTDKGFSQLPTKNLTLWDHFNQQVFDVEQYEKKLGIEQYQMLD 168

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GDS + IPGI GIG K+AA LL ++  L N+  +   +  K+  + + E  E AR
Sbjct: 169 FIALAGDSGNKIPGIMGIGPKSAADLLNKFRTLANLYRSLDNLGAKQALK-LAEGKEIAR 227

Query: 242 LSRKLVMLRTDVPITIPLEHL 262
           +S KL  L+ D+P+ I L+  
Sbjct: 228 ISYKLAQLQCDIPLNINLKQF 248


>gi|262165146|ref|ZP_06032883.1| probable exodeoxyribonuclease IX [Vibrio mimicus VM223]
 gi|262024862|gb|EEY43530.1| probable exodeoxyribonuclease IX [Vibrio mimicus VM223]
          Length = 259

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 125/259 (48%), Gaps = 13/259 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQP---------DPNDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SP   + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPPLQIRDYFQHRWLDEPFITQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG K A  +L ++ N+E     AS    +K R+ +    E AR+ 
Sbjct: 175 GLAGVSSSQIPGVAGIGPKAAKEILTQFANIEEAY--ASPELPEKYRKKLEPQIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHL 262
           +++  L+TD+ +   L+ +
Sbjct: 233 KQVSALKTDIELGFNLQDI 251


>gi|237807265|ref|YP_002891705.1| 5'-3' exonuclease [Tolumonas auensis DSM 9187]
 gi|259710449|sp|C4L9Z0|XNI_TOLAT RecName: Full=Protein Xni
 gi|237499526|gb|ACQ92119.1| 5'-3' exonuclease [Tolumonas auensis DSM 9187]
          Length = 260

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 127/257 (49%), Gaps = 5/257 (1%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R      + S++H       +A     + + +    +E+  SH   +F
Sbjct: 3   HLLILDALNLIRRIH---SVQSKQHPDDVAAQLAATDITMQRAVNTILQEATPSHVIAVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A  +R   Y  YK  R  +P+ L   L  ++ +    GI ++  +  EADD+IAT  
Sbjct: 60  DSEAPGWRKAKYAAYKEGRTAMPDALRQGLGQLQDSLLRLGIDSLVSETDEADDLIATLV 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
                    VT+ISTDK   QL+     + D   +  +D   V +++G+ P ++V   AL
Sbjct: 120 KPLVANDHQVTLISTDKGFCQLLDSGLQIRDYFNKRWLDHAFVQQQYGLQPSQLVDFWAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
           TG S  NI G+PGIG KTA  LL EYG L  +L   +     K+ + + ++ E   L+++
Sbjct: 180 TGISGMNIKGVPGIGEKTAQQLLSEYGTLTQLL--DADATDNKKLQLVQQHREVCLLAQE 237

Query: 246 LVMLRTDVPITIPLEHL 262
           LV L+ D+P+   L+ L
Sbjct: 238 LVRLKDDIPLGFNLKDL 254


>gi|331013568|gb|EGH93624.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 443

 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 148/300 (49%), Gaps = 25/300 (8%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF-KVE 425
           +Y  I+       W++KL      +F   ++  DA  ++ + ++ +T  Q  + ++  + 
Sbjct: 47  AYEVILEQSQFDAWLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAT--QTHEAAYIPLT 104

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--------H 477
             ++ +     +D+         +L  LK   E+    K+G + K+   +L         
Sbjct: 105 HSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQ 155

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
             GI ++G   D +L SYVLDS  + HD  S+  K+L++T    +EI       +  D+I
Sbjct: 156 TQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQI 215

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q  ++A E +++ L+L  +   +L  +  L  V   ++ P++ V++ +E  G  +D 
Sbjct: 216 AIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIERQGALVDA 275

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT TGQ  T
Sbjct: 276 NLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQAST 335


>gi|215427467|ref|ZP_03425386.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis T92]
          Length = 317

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 134/285 (47%), Gaps = 35/285 (12%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S  +R+    P      D   VNA  GF + +  ++   R     +  AV  D  
Sbjct: 6   VLDGASMWFRSIIGVPSSITAPDDRTVNAERGFIDSMAVVITQQR----PTRLAVCLDLD 61

Query: 69  -AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      GF
Sbjct: 62  WRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGF 121

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHV 168
           EADD++ T      ++   V ++S D+DL+Q+V+    P   LY      K        V
Sbjct: 122 EADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 179

Query: 169 IKKWGIPPEKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   
Sbjct: 180 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 239

Query: 225 KQ---KKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
           K    K  R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 240 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 284


>gi|84496431|ref|ZP_00995285.1| putative 5'-3' exonuclease [Janibacter sp. HTCC2649]
 gi|84383199|gb|EAP99080.1| putative 5'-3' exonuclease [Janibacter sp. HTCC2649]
          Length = 333

 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 149/333 (44%), Gaps = 66/333 (19%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +S  +RAF+  P      D  P NA+ GF +M+  L    +     +H    +
Sbjct: 5   RLLLLDSASLYFRAFFGVPDQRSSSDEPPTNALRGFLDMIATLTTAHQP----THLVACW 60

Query: 66  D---YPAVTFRNEIYPDYKANR--------------------------------PKIPEM 90
           D    P   FR ++ P YKA+R                                 ++P+ 
Sbjct: 61  DNDWRP--QFRVDLIPSYKAHRVGEPVGSAKNSVNVAAGAVPDQAHPASADTAIEELPDD 118

Query: 91  LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP 150
           L PQ+PL+  A  A GI  +   GFEADD+I T      +   A+ +++ D+DL+QL+  
Sbjct: 119 LSPQVPLIADALAALGIARLGADGFEADDVIGTLVE-RHRGSMAIDVVTGDRDLLQLIDD 177

Query: 151 TT---CLY---DTVKEEKIDIEHVIK-KWGIP-PEKMVCLQALTGDSIDNIPGIPGIGYK 202
                 LY     V+E     +  ++ K+ +P  +  + +  L GD+ D +PG+ GIG K
Sbjct: 178 ANSVRVLYTGKGGVREPDQGTQAYLQEKYAVPNGDAYLDMSILRGDTSDGLPGVKGIGDK 237

Query: 203 TAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL 259
           TAA L+  YG+LE +   + +     +  RR N+   A    ++ ++V +  D P+    
Sbjct: 238 TAAQLIAAYGSLEGLRKAVADGDPAIKGARRANLEAAAAYLDVAPRVVRVARDAPVA--- 294

Query: 260 EHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
                 D +    IS    +  T+L++ +A+TY
Sbjct: 295 ------DTD----ISLPTKVADTRLLSLLASTY 317


>gi|119716884|ref|YP_923849.1| 5'-3' exonuclease [Nocardioides sp. JS614]
 gi|119537545|gb|ABL82162.1| 5'-3' exonuclease [Nocardioides sp. JS614]
          Length = 301

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 26/231 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RAF+  P +    DG PVNA+ G  + + +L+ + R     +H    +D  
Sbjct: 2   LLDSASMYFRAFFGVPEILAP-DGTPVNAVRGLLDFIARLVADYR----PTHLVACWDND 56

Query: 69  -AVTFRNEIYPDYKANR--------PKIPEMLLP---QLPLVRLATQAFGIPAIEIQGFE 116
               +R ++ P YKA+R        P + E+  P   Q+P++R    AFGI  +   G+E
Sbjct: 57  WRPQWRVDLLPSYKAHRVEAERTGEPDVEEVPGPLEVQVPIIREVLAAFGICVLGADGYE 116

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLV---SPTTCLY---DTVKEEKIDIEHVIK 170
           ADD+I +    A +    V +++ D+DL QLV   +    LY      K E++  + V  
Sbjct: 117 ADDVIGSLATQARQ---PVDVVTGDRDLFQLVDDEADVRVLYIARGVGKHERVTNDWVRT 173

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
           K+GI   +      L GD+ D +PG+ G+G KTAA LL  +G++  I+  A
Sbjct: 174 KYGIDARQYADFATLRGDASDGLPGVAGVGEKTAATLLGRFGDMAGIVAAA 224


>gi|288556758|ref|YP_003428693.1| 5'-3' exonuclease [Bacillus pseudofirmus OF4]
 gi|288547918|gb|ADC51801.1| 5'-3' exonuclease [Bacillus pseudofirmus OF4]
          Length = 300

 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 18/262 (6%)

Query: 7   LFLVDGSSFIYRAFYATPL------LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG + + R ++AT        LS+  DGL  NA+  F   L  L+     E   +H
Sbjct: 6   LLLIDGFNLLSRGYFATSYGRSDDQLSKNSDGLYTNALRVFFQKLMNLIH----EHDVTH 61

Query: 61  FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV +D     + R +  P YK  R  +P  L+ Q        +  GI  + +  +EADD
Sbjct: 62  AAVAWDVKREDSVRRQYAPTYKETRNDLPAPLIEQYETCTRILEDMGILQVTVPPYEADD 121

Query: 120 IIATYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI--KKWGIPP 176
            I   +   + +      I S D+DL+QL+   T      K+ +I   H    +++GI P
Sbjct: 122 AIGALSCQWSNRNDGRCLIYSNDRDLLQLLDERTTQIIASKKGEILYTHTHFEEEYGITP 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL----INASRIKQKKRREN 232
            + + ++AL GD  DNIPG PG+G K+A  L+Q+YG++E +             K+ ++ 
Sbjct: 182 TQWIDVKALLGDKSDNIPGCPGVGEKSALPLIQQYGSVEGVYNQLETGEFDPAYKRYQKK 241

Query: 233 ILEYAETARLSRKLVMLRTDVP 254
           ++   E+A LS+KL  +  ++P
Sbjct: 242 LIAGRESAILSKKLATIICEIP 263


>gi|229917676|ref|YP_002886322.1| 5'-3' exonuclease [Exiguobacterium sp. AT1b]
 gi|229469105|gb|ACQ70877.1| 5'-3' exonuclease [Exiguobacterium sp. AT1b]
          Length = 330

 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 154/305 (50%), Gaps = 55/305 (18%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVN-----AIAGFCNMLWKLLQNSRKESIA 58
           E  LFL+DG+S +  A+Y     SR   G  V+     A+ G   ++  +L+  R     
Sbjct: 2   ERKLFLIDGNSMLASAYYGA-AASRTKKGREVSKNDRSAVIGMTGLIRTILRRHR----P 56

Query: 59  SHFAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           +HF V++D    T +R E+YP YK  R + P  L  Q+ L+R   +  GIP  +++G+E 
Sbjct: 57  THFVVVWDVSRETLWRRELYPGYKRRRRQTPPELKAQMELMRQLLEDSGIPQFQVEGYEG 116

Query: 118 DDIIATYTYIAEKEGFA--VTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDI----- 165
           +D+IA   +IA K   +  V I++ DKDL+QLVSP   ++   +E      + DI     
Sbjct: 117 EDLIA---HIARKFSCSAPVVIMTKDKDLLQLVSPRITVWLQTQELQQMQARCDIRDNRP 173

Query: 166 -----------EHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
                      E +   + G+ P+++  ++ALTGD  D IP + G+    +  L++ +G+
Sbjct: 174 LPLKRHLEIRPEEIAALYEGLKPKQLSAVKALTGDRSDGIPPVAGLDESQSVQLIKRFGS 233

Query: 214 LENILINASRIKQKKRR---ENIL-----EYAETARLSRK-----LVMLRTDVPITIP-L 259
           L+  L +A  IK +KR+   E I      E     R +RK     + ++R DV  T+P L
Sbjct: 234 LDK-LYSALSIKGEKRQQVNETIAALTSEEVPRNLRRTRKKAERNMELVRLDV--TVPAL 290

Query: 260 EHLIL 264
           EHL L
Sbjct: 291 EHLKL 295


>gi|312601528|gb|ADQ90783.1| 5'-3' exonuclease [Mycoplasma hyopneumoniae 168]
          Length = 261

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 114/196 (58%), Gaps = 9/196 (4%)

Query: 37  AIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP 96
           A+  F + ++KLL+  R +++  +FA  FD+ A T R+++YPDYK  R K P+ L  Q+ 
Sbjct: 4   AVHIFFSSVFKLLKLLRPDNV--YFA--FDFGAKTPRHQMYPDYKKGRIKPPDSLFFQMD 59

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTY-IAEKEGFA-VTIISTDKDLMQLVSPTTCL 154
            ++           E Q FEADD+IA+    I +K+  A + I S D+DL+QLV   T +
Sbjct: 60  QIKKILSLANFLWSEHQDFEADDLIASLKKKIQKKDNEAEILIFSADQDLLQLVDKKTKV 119

Query: 155 YDTVKEEKIDI---EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
              +K   I+I   E+  + +G  P +++  + L GD  DNI  I G+G KTA  LL++Y
Sbjct: 120 ITKIKNNFININTQENFYESYGFSPSQVIDFKVLAGDVSDNIKVIEGLGKKTAIKLLEKY 179

Query: 212 GNLENILINASRIKQK 227
            NL+NIL+N  +I QK
Sbjct: 180 KNLDNILLNLDKINQK 195


>gi|156101137|ref|XP_001616262.1| DNA polymerase 1 [Plasmodium vivax SaI-1]
 gi|148805136|gb|EDL46535.1| DNA polymerase 1, putative [Plasmodium vivax]
          Length = 1221

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 150/332 (45%), Gaps = 80/332 (24%)

Query: 670  NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            N+  +R+  K+   Y ++LP  I K T ++H  ++     TGRL+  +PNLQNI  +   
Sbjct: 794  NVKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQIGASTGRLSCEQPNLQNIHSRFRC 853

Query: 730  -----------------------------------GQKIRRAFISPPT-----------K 743
                                               G  +  A   PP            +
Sbjct: 854  AVSLKGGEVGGEERGSGERGIANQCSANRGSVEVGGNNLTTAENPPPANFTCEGAPPDGE 913

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             LI+ DY Q+EL ++A+++    L ++ + S D+    A  +F  N  +V+ ++RR  KT
Sbjct: 914  NLITFDYKQMELFVMAYLSFDVQLLKMLQ-SGDVFVETAKVLF--NTTQVTSELRRMTKT 970

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            + + I+YG +   LA  L I    A++ I  +F  FP ++ +++  K  ++    V T+ 
Sbjct: 971  VIYGILYGQTENGLAKSLLISEGMASNLISNFFQVFPNVYRFMQMQKILLKHMNRVYTLI 1030

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH--------------- 908
            GR+     +  P  +I+N   R ++N PIQG AAD+ + A++S                 
Sbjct: 1031 GRK----RVIEP--TIKN-KYRISMNTPIQGCAADVMKFALLSCFCIMTHGWPQSARLLK 1083

Query: 909  ------KSLEDHK---LATKMLLQIHDELVFE 931
                    LE++K    ATK++LQ+HDEL+FE
Sbjct: 1084 INNVSAAVLEENKPFLKATKLILQVHDELLFE 1115


>gi|309807617|ref|ZP_07701563.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308169138|gb|EFO71210.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 341

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 113/206 (54%), Gaps = 6/206 (2%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           +P+++      GI + E+  +EADDI+ T   +    GF VTI++ D+DL QL      +
Sbjct: 1   MPIIKELLTYLGIKSYELSNYEADDILGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTV 60

Query: 155 YDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
             T K+   D+E     H+ + +G+ P++ + ++AL GD+ DN PG+  +G KTA+ L+ 
Sbjct: 61  MVT-KKGVNDLEIYTPKHMQEVYGVTPKQFIDVKALMGDASDNYPGVEKVGAKTASKLIN 119

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           +YG++EN+    +++K  K +E ++     A L +KL  +    P+ + ++ L L+    
Sbjct: 120 QYGSVENLYEKIAQVKASKIKEYLIRDKNNAILGKKLATIDCTSPVDLKIDDLELQAQQL 179

Query: 270 PRLISFLKALEFTKLINRVATTYDCD 295
            +L SF + L F K ++ +    + D
Sbjct: 180 TQLRSFYERLGFKKFLSELPDVEEID 205


>gi|147858394|emb|CAN81408.1| hypothetical protein VITISV_010447 [Vitis vinifera]
          Length = 734

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 125/271 (46%), Gaps = 61/271 (22%)

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
            + FR+ +YP YK+NRP  P+ ++  L  ++ + +A  I  IE+ G EADD+I T +  +
Sbjct: 439 GLNFRHTLYPSYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLSVRS 498

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-IPPEKMVCLQ 183
              G+ V ++S DKD  Q++SP+  L              +E   K++G + P + V + 
Sbjct: 499 VDAGYKVRVVSPDKDFFQILSPSLRLLRIAPRGFEMTSFGMEDFAKRYGNLEPSQFVDVI 558

Query: 184 ALTGDSIDNIP------------------------------------------------- 194
           +L GD  DNIP                                                 
Sbjct: 559 SLVGDKSDNIPGSFVLIMVKDPIENIPIEKLVSDIVVFFFLYCKSEQSDPRILRIVLLGN 618

Query: 195 GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP 254
           G+ GIG   A  L+ ++G LEN+L    ++++++ R+ ++  A+ A LS+ L +LR D+P
Sbjct: 619 GVEGIGNVHAVQLITKFGTLENLLQCVDQVQEERIRKALISGADQAVLSKNLALLRCDLP 678

Query: 255 I-TIPL--EHLIL---EDCNGPRLISFLKAL 279
              +P   E LI    ED NG +  S L A+
Sbjct: 679 FYMVPFTTEDLIFTKPED-NGEKFTSLLNAI 708


>gi|240047653|ref|YP_002961041.1| 5-3 exonuclease [Mycoplasma conjunctivae HRC/581]
 gi|239985225|emb|CAT05238.1| 5-3 exonuclease [Mycoplasma conjunctivae]
          Length = 293

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 12/229 (5%)

Query: 7   LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L+DG+  +++++Y +     L +   G+  NAI  F    +KL+  +    I  +FA 
Sbjct: 5   ILLIDGNLMLFKSYYGSVYGGGLLKNSQGIETNAIHTFFLTFFKLI--NLFNPINCYFA- 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  + T R+  + +YK  R + PE L  Q+  V+       I   +   +EADD+IA+
Sbjct: 62  -FDKGSKTPRHLAFSEYKQGRSETPESLFTQMEKVKQILTYANINWSQDYNYEADDLIAS 120

Query: 124 YT--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG---IPPEK 178
                + +     + I S D+DL+QL+   T + DT+K E  +I+++   +    I P +
Sbjct: 121 LKKQILDQNPQAKIVIFSADQDLLQLIDENTIVVDTIKAEGPNIKNLDNFYDLHHIFPHQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           +V  + L+GD  DNI  I G+G K A  LL++YGNLENI+ N+ +I  K
Sbjct: 181 VVDFKVLSGDKSDNIKIIAGLGLKGAQKLLEKYGNLENIIANSDQISGK 229


>gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5]
 gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase
 gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5]
          Length = 595

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 141/314 (44%), Gaps = 31/314 (9%)

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ--RVH 700
            +T+TG+ +  A  L+++    N +     E ++L K + T+       I+ R    R H
Sbjct: 289 GRTETGKRQVNAALLDKLVEDGNELAAIAQEAKKLGKWRKTWVQKF---IDTRDSEDRCH 345

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           TF +     T R++      Q +P    +   +RR FI+ P   + S DY   ELR+LA 
Sbjct: 346 TFINPLQARTSRMSITGIPAQTLPSSDWI---VRRCFIAEPGDVMASVDYQAQELRVLAA 402

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    + + FEN  D+H+M A           +   R+  KT NF  +YG     LA  
Sbjct: 403 LSGDRNMIEAFENGADLHQMTA---------DAAQVPRKVGKTANFQKVYGGGAKALAEA 453

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           + I    A    + +   +PG+    +K      +NGY+    GRR+       P  S R
Sbjct: 454 VGISIPVAKRVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAMGRRL-------PVDSSR 506

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
             +   A+N  IQ S+ D+T RA+I +H++         + L IHDE+V  +P  E   A
Sbjct: 507 TYS---ALNYMIQSSSRDVTCRALIRLHEA----GYTPYLRLPIHDEIVASLPASEAERA 559

Query: 941 SQIIVHSMEKACLP 954
           +  I H M++   P
Sbjct: 560 AAHIGHLMQEQMGP 573


>gi|301299356|ref|ZP_07205639.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853042|gb|EFK80643.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 253

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 16/210 (7%)

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQ 183
           AEK+ + V +++ D+DL QL +    +  TVK     E+    HV +K G+ PE++V ++
Sbjct: 1   AEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIGLIPEQIVDMK 60

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DN PG+  IG KTA  LL++YG L+ I  N   +K+ K +EN++   E A L 
Sbjct: 61  ALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENLIREKEIAYLC 120

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN--RVATTYDCD----AA 297
           + L  +R D P+ I LE       +  +L++  + L+F K ++  +  ++   D     +
Sbjct: 121 QDLAEIRKDAPVEIDLEETEWTGKDIEKLVTLYQKLDFRKFLSQLKAESSEQLDIFESKS 180

Query: 298 NIEPVVL------DINTTENKGIAIETEID 321
           NIE   L      DIN ++N  I    EID
Sbjct: 181 NIEFTELTEENLDDINVSDNDEIVFNLEID 210


>gi|308187959|ref|YP_003932090.1| 5'-3' exonuclease [Pantoea vagans C9-1]
 gi|308058469|gb|ADO10641.1| 5'-3' exonuclease [Pantoea vagans C9-1]
          Length = 251

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 21/252 (8%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             + G    L ++L ++R     +H   
Sbjct: 4   HLVIVDALNLIRRLHAVQGSP------------CVDGCVAALRQVLGHAR----PTHAVA 47

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A    +R+++ PDYK+ RP +P+ L  ++P ++ A ++ G+        EADD+ 
Sbjct: 48  VFDGEARHQGWRHQLLPDYKSGRPPMPDDLQAEMPALQEAFRSAGVSCWIAGEDEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL++P   + D  ++  +D+  +  ++G+ P+ +  
Sbjct: 108 ATLAVKMAQAGHLATIVSTDKGYCQLLAPEIRIRDYFQKRWLDLPFIEAEFGVAPQLLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGI GIG K+A  LL E+  LE I     ++   K RE + E  + A 
Sbjct: 168 YWGLCGISSSKIPGITGIGPKSAKQLLAEFHTLEGIYQQLDQVP-AKWREKLAEGQQMAE 226

Query: 242 LSRKLVMLRTDV 253
           +SR++  L+ D+
Sbjct: 227 ISRQVATLKRDL 238


>gi|304399245|ref|ZP_07381112.1| 5'-3' exonuclease, SAM-fold domain [Pantoea sp. aB]
 gi|304353299|gb|EFM17679.1| 5'-3' exonuclease, SAM-fold domain [Pantoea sp. aB]
          Length = 251

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 21/252 (8%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             + G    L ++L ++R     +H   
Sbjct: 4   HLVIVDALNLIRRLHAVQGSP------------CVDGCVAALRQVLGHAR----PTHAVA 47

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A    +R+++ PDYK+ RP +P+ L  ++P ++ A +A G+        EADD+ 
Sbjct: 48  VFDGEARHQGWRHQLLPDYKSGRPPMPDDLQAEMPALQEAFRAAGVSCWIAGEDEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL++P   + D  ++  +D+  +  ++G+ P+++  
Sbjct: 108 ATLAVKMAQAGHQATIVSTDKGYCQLLAPEIRIRDYFQKRWLDLPFIEAEFGVAPQRLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGI GIG K+A  LL  +  LE +     ++   K RE + E    A 
Sbjct: 168 YWGLCGISSSKIPGITGIGPKSAKQLLTTFQTLEGVYQQLDQVP-AKWREKLAEGQHMAE 226

Query: 242 LSRKLVMLRTDV 253
           +SR++  L+ D+
Sbjct: 227 ISRQVATLKQDL 238


>gi|48429404|gb|AAT42470.1| PolA [Escherichia coli B]
          Length = 179

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 104/171 (60%), Gaps = 5/171 (2%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508
           L  LK   E+E  LK+G N+KYD+ +L  YGI +RG   D ML SY+L+S    HD+ S+
Sbjct: 9   LELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSL 68

Query: 509 AQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           A++WL +   T +EI    K+ +  ++I+  +   +A E+++V LQL L + P L   K 
Sbjct: 69  AERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKG 128

Query: 566 -LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
            L+V+E ++ P++ V+S++E  G++ID  +L   S E++  L  LE+  ++
Sbjct: 129 PLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHE 179


>gi|162421325|ref|YP_001607517.1| exonuclease IX [Yersinia pestis Angola]
 gi|269969685|sp|A9R2J1|XNI_YERPG RecName: Full=Protein Xni
 gi|162354140|gb|ABX88088.1| exodeoxyribonuclease-9 (Exodeoxyribonuclease IX)(Exonuclease IX)
           (Exo IX) [Yersinia pestis Angola]
          Length = 218

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 20/209 (9%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P             +    + L +L+Q+S+     SH   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSP------------CVKACQHALQQLIQHSQ----PSHAVA 47

Query: 64  IFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++PL+R A    G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQE 210
              L G S   IPG+ G+G KTA LLLQ+
Sbjct: 168 YWGLAGISSSKIPGVAGVGAKTATLLLQQ 196


>gi|115376896|ref|ZP_01464117.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115366075|gb|EAU65089.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 259

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 86/245 (35%), Positives = 118/245 (48%), Gaps = 18/245 (7%)

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           K    +H AV FD P  +FRN ++  YK++   +P  L  Q  L   A +A G+ A  ++
Sbjct: 11  KAEAVTHLAVAFDNPIRSFRNTLFAGYKSDE-GVPPELHAQFDLAEEAVRALGVTAWSMK 69

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEHVIKKW 172
             EADD +AT       +   V +++ DKDL Q V     +  D  +E+++D E V  K 
Sbjct: 70  DHEADDALATAAARWAAQVEQVRLLTPDKDLGQCVRGRHVVQVDRRQEKELDEEAVRAKL 129

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+PP  +  L AL GD  D IPG+ G G K AA LL  YG+LE I   A+  K + R   
Sbjct: 130 GVPPASVPDLLALVGDEADGIPGLTGFGEKGAATLLTAYGHLEAIPAEAADWKVRPRGAE 189

Query: 233 IL-----EYAETARLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLIN 286
            L     E+ E A L R+L  L TD P+   L  L  +    GP          F  L N
Sbjct: 190 RLAATLREHREEALLYRRLATLVTDAPLKESLAALAWKGVPRGP----------FEALCN 239

Query: 287 RVATT 291
           R+  T
Sbjct: 240 RLGVT 244


>gi|262198341|ref|YP_003269550.1| 5'-3' exonuclease, SAM-fold domain protein [Haliangium ochraceum
           DSM 14365]
 gi|262081688|gb|ACY17657.1| 5'-3' exonuclease, SAM-fold domain protein [Haliangium ochraceum
           DSM 14365]
          Length = 294

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 15/267 (5%)

Query: 6   HLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           ++ LVDG+  ++RA+Y   P  ++  DG  V  +     ++  LL   R+  + +H AV 
Sbjct: 2   NVHLVDGTFELFRAYYGGRP--AKAPDGAEVAEVGATRTLMRSLLALVREPEV-THVAVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    +FRNE++  YK      PE LL Q  L   A +A G+    ++ +EADD +A  
Sbjct: 59  FDTVIESFRNELFDGYKTGAGIEPE-LLAQFALAEEAAEALGLVVWRMRRYEADDALAAG 117

Query: 125 TYIAEKEGFAVTII--STDKDLMQLV--SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
                ++     ++  S DKDL Q V      CL D ++++ +D   VI+K+G+PP  + 
Sbjct: 118 AARYAEDARVTRVLLCSPDKDLAQCVRGERVVCL-DRMRKKLLDEAGVIEKFGVPPASIP 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL-----E 235
              AL GDS D IPG+P  G K+ A +L  YG+L+ I   AS  + K R  + L     E
Sbjct: 177 DYLALVGDSADGIPGLPRWGAKSTATVLAHYGDLDAIPDQASDWQVKVRGADGLATSLRE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL 262
             E ARL R+L  LR+DVP++  L+ L
Sbjct: 237 RREDARLYRELARLRSDVPLSESLDDL 263


>gi|75759443|ref|ZP_00739536.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74493056|gb|EAO56179.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 1015

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 153/320 (47%), Gaps = 29/320 (9%)

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM-TGRLASLEPNLQNIP 724
           P +    E+ +++ ++  ++ +LP      T     F  +   + TGR++  +PN Q+  
Sbjct: 423 PFVNYFQEFNEVNTLRKNFSKNLPEFC---TPDGFMFSGVKQFLKTGRVSISKPNYQSY- 478

Query: 725 IKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVA 782
                     + +I P P   +   DYS IE R++A ++K   L + F++ + D H++ A
Sbjct: 479 ------NDTVKKYIKPRPGFWMGDMDYSSIEYRVIASMSKQLSLIEAFQDPNTDYHKLQA 532

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL--RIPRS---EAADYIKRYFH 837
           + ++ +  E VS  MR  AK  NF I +G+   +L   +  ++ +    +A    +RYF 
Sbjct: 533 SNMYQIPYELVSKAMRGEAKAFNFGIPFGMGNEKLGMTIFGKVSKENTRKATALRERYFK 592

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
               + E+    +    + GY ET FGRR +Y++  +   SI+    R   N  IQG+AA
Sbjct: 593 GQDNVREFFVNAQRDAVKYGYTETHFGRRRYYNKETTSVGSIK----RQGGNQRIQGTAA 648

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQ--IHDELVFEVPEE-EITTASQIIVHSMEKACLP 954
           DI ++A++ +   + +     K+LL   IHDEL+ EV  E       +++   ME     
Sbjct: 649 DIYKQAVVRLFLRIINEGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEME----L 704

Query: 955 KINLRVPLKVNIKVSNNWQE 974
           K++   PL +   V  +W E
Sbjct: 705 KVDGFCPLYIGFGVGRSWYE 724


>gi|229493526|ref|ZP_04387311.1| 5-3 exonuclease [Rhodococcus erythropolis SK121]
 gi|229319487|gb|EEN85323.1| 5-3 exonuclease [Rhodococcus erythropolis SK121]
          Length = 321

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 82/237 (34%), Positives = 118/237 (49%), Gaps = 27/237 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RAFYA P      DG PVNA+ GF +M+  L+   +     S  AV  D
Sbjct: 5   LLLLDGASLWFRAFYALPESFVDPDGRPVNAVRGFTDMVASLITKHQ----PSRLAVCLD 60

Query: 67  YP-AVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                 FR +  P YKA+R          ++P+ L PQ+ ++     A GI      G E
Sbjct: 61  LDWRPQFRVDAVPTYKAHRVEEGSDGASEEVPDTLTPQVDMIMDVLAAAGIATAGAVGLE 120

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHVI 169
           ADD++ T     E+E   V ++S D+DL+Q+V+    P   LY      K E      V 
Sbjct: 121 ADDVLGTLA-ATEREDLTV-VVSGDRDLLQVVTDEYVPVRVLYVGRGLSKAELFGPVEVA 178

Query: 170 KKWGIP----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
           +K+G+P     E    L  L GD+ D +PGI G+G KTA+ L+  YG+L  +   A+
Sbjct: 179 EKYGVPGDRAGEAYAELAVLRGDASDGLPGIKGVGEKTASTLMLRYGSLAGLRAAAA 235


>gi|312197474|ref|YP_004017535.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Frankia sp. EuI1c]
 gi|311228810|gb|ADP81665.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Frankia sp. EuI1c]
          Length = 384

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 111/266 (41%), Gaps = 70/266 (26%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD--- 66
           VD  S  +RAFY  P      DG+PVNA+ G  ++L + + + R     +H    FD   
Sbjct: 33  VDTPSLYFRAFYGVPQSVTAPDGMPVNAVRGLLDVLARQIADLRP----AHLVCCFDGDW 88

Query: 67  YPAVTFRNEIYPDYKANR--------------------------------------PKIP 88
            PA  FR E+   YKA+R                                       ++P
Sbjct: 89  RPA--FRVELVESYKAHRVADVLDPAAVPPSVPVSAAATPGPAGTTEGVAAGAVAVEEVP 146

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT----------YIAEKEGFA---- 134
           + L PQLP++     AFGI  +E  GFEADD+I T            + A+  G A    
Sbjct: 147 DELTPQLPVIDAVLDAFGICRVEAAGFEADDVIGTLATRFPHGDAAGWAAQDRGEAPAGG 206

Query: 135 ------VTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
                 V I++ D+DL QLV    P    Y   K   ID   V  ++G+P         L
Sbjct: 207 GPFAGPVEILTGDRDLFQLVRDDVPVRVRYSVEKFAAIDEAAVSARYGVPGRAYGDFATL 266

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEY 211
            GD  D +PG+ GIG KTAA LL  +
Sbjct: 267 RGDPSDGLPGVAGIGAKTAAALLTRF 292


>gi|229915869|ref|YP_002884515.1| 5'-3' exonuclease [Exiguobacterium sp. AT1b]
 gi|229467298|gb|ACQ69070.1| 5'-3' exonuclease [Exiguobacterium sp. AT1b]
          Length = 260

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 23/263 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNML--WKLLQNSRKESIASHFAVI 64
           L LVDG + + R ++AT    R+    P   + G    +  W         +  SH A  
Sbjct: 3   LILVDGFNLLSRYYFAT---ERRRAQDPEVTVKGLLRKVDSWT--------TDFSHIAFF 51

Query: 65  FDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +D     T R  +YP+YKA R  +PE L      +R A    GI   E+ G+EADD++  
Sbjct: 52  WDGTRESTHRYAMYPEYKATRNGLPEPLFEDYLKLRTALDERGILQSELTGYEADDLMGA 111

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKIDIEHVIK-KWGIPPEKMVC 181
                  E +   + S+D+DL+QL+SP    +     EE++  E   +  +G+ P + V 
Sbjct: 112 VATAFPGESY---LYSSDRDLLQLLSPNVFQIMPKKGEEQLVNEASFELMYGVKPYQFVD 168

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS----RIKQKKRRENILEYA 237
           ++AL GDS DNIPG+ GIG KTA +L+Q Y  +E + ++          +K  + +  + 
Sbjct: 169 VKALQGDSSDNIPGVRGIGPKTATILIQHYDTIETLYMHVQNETLEAPHQKYAKKLDGHE 228

Query: 238 ETARLSRKLVMLRTDVPITIPLE 260
           E A LS++L  +    P+    E
Sbjct: 229 EIALLSKRLSQIDIHAPVNTDWE 251


>gi|228904297|ref|ZP_04068392.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|228930754|ref|ZP_04093731.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228828844|gb|EEM74504.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228855382|gb|EEM99946.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 1097

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 153/320 (47%), Gaps = 29/320 (9%)

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM-TGRLASLEPNLQNIP 724
           P +    E+ +++ ++  ++ +LP      T     F  +   + TGR++  +PN Q+  
Sbjct: 505 PFVNYFQEFNEVNTLRKNFSKNLPEFC---TPDGFMFSGVKQFLKTGRVSISKPNYQSY- 560

Query: 725 IKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVA 782
                     + +I P P   +   DYS IE R++A ++K   L + F++ + D H++ A
Sbjct: 561 ------NDTVKKYIKPRPGFWMGDMDYSSIEYRVIASMSKQLSLIEAFQDPNTDYHKLQA 614

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL--RIPRS---EAADYIKRYFH 837
           + ++ +  E VS  MR  AK  NF I +G+   +L   +  ++ +    +A    +RYF 
Sbjct: 615 SNMYQIPYELVSKAMRGEAKAFNFGIPFGMGNEKLGMTIFGKVSKENTRKATALRERYFK 674

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
               + E+    +    + GY ET FGRR +Y++  +   SI+    R   N  IQG+AA
Sbjct: 675 GQDNVREFFVNAQRDAVKYGYTETHFGRRRYYNKETTSVGSIK----RQGGNQRIQGTAA 730

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQ--IHDELVFEVPEE-EITTASQIIVHSMEKACLP 954
           DI ++A++ +   + +     K+LL   IHDEL+ EV  E       +++   ME     
Sbjct: 731 DIYKQAVVRLFLRIINEGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEME----L 786

Query: 955 KINLRVPLKVNIKVSNNWQE 974
           K++   PL +   V  +W E
Sbjct: 787 KVDGFCPLYIGFGVGRSWYE 806


>gi|119493749|ref|ZP_01624319.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
 gi|119452494|gb|EAW33680.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
          Length = 874

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 140/557 (25%), Positives = 246/557 (44%), Gaps = 82/557 (14%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG-RSSHDIASI 508
           S L K  +    +K+  +    + +L++ G+ + G   D+ L   +L +G    + IASI
Sbjct: 33  SQLSKILQEPTTVKVFADAVVGQNLLNQNGLKVGGQIFDVKLADSLLTAGLEVDNSIASI 92

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           + + L        K    S+P D                 +L+L  +LR KL  E+L+ V
Sbjct: 93  SSRHLG-------KFSLESLPQD-----------------LLKLRDVLRVKLASEELIEV 128

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK- 627
             +++       +QM   G+++D   LK    E+ +    LE  + D  GEK    + K 
Sbjct: 129 A-KIEFNATKATAQMSQNGVRLDTAWLKDKQQELEEERRGLESQVKDWLGEKLPDETDKI 187

Query: 628 QLGDILFTKLKFPSGAKTKTGQ-WKTTAQDLEQIN-------CGDNPIIKNILEWRQLSK 679
           QL D+  TK       KT+T + +      LE  N         ++PI+      R ++ 
Sbjct: 188 QLSDLTSTK----KADKTQTLECFNRAGVPLESFNKNHIQSLTTEHPILNQFQRMRTVND 243

Query: 680 -IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
            I +     L N ++    +V+  +   S  TGR+++ +P +QNIP        ++RA I
Sbjct: 244 LIGNKGIQGLLNVVDDEN-KVYPTWHQNSAATGRMSATKPAIQNIPAS------LKRAII 296

Query: 739 SPPTKK------LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
             P ++       + ADYSQ ELRILA +     L   ++   D HR+ A+ + G    +
Sbjct: 297 --PEQQGEEKQVFVRADYSQQELRILAQLTGDKTLTSAYQEGRDAHRLTASLMTGKPENQ 354

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS------EAADYIKRYFHRFPGIHEYI 846
           ++ + R+ AK +NF  IYG SP  L +  ++         +A  +       +P +  + 
Sbjct: 355 ITSEERQRAKPVNFGKIYGQSPQGLQSYAKVSYGVEFSIEDAMKFQAAMDKGYPSVARHE 414

Query: 847 EKTK-NFVRQ---------NGY--VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           ++ + +F  Q         N Y    T+ GR+    E    +     INE  A+NAPIQG
Sbjct: 415 QQVRQDFKHQWNAALSSEDNQYPQTRTLLGRK---REWQPQQHQYPPINE--ALNAPIQG 469

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           S AD+++ A+  +  +L++     K+ L  HD++V    E +     +I+   M+ A L 
Sbjct: 470 SGADMSKLALALLPDALQE--TGAKITLIRHDKIVLTAQESQAEKVGKILESVMKVAGL- 526

Query: 955 KINLRVPLKVNIKVSNN 971
           +I   +P    + + +N
Sbjct: 527 RITPDIPTVAEVSICDN 543


>gi|226306651|ref|YP_002766611.1| 5'-3' exonuclease [Rhodococcus erythropolis PR4]
 gi|226185768|dbj|BAH33872.1| probable 5'-3' exonuclease [Rhodococcus erythropolis PR4]
          Length = 321

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 81/237 (34%), Positives = 118/237 (49%), Gaps = 27/237 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RAFYA P      DG PVNA+ GF +M+  L+   +     S  AV  D
Sbjct: 5   LLLLDGASLWFRAFYALPESFVDPDGRPVNAVRGFTDMVASLITKHQ----PSRLAVCLD 60

Query: 67  YP-AVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                 FR +  P YKA+R          ++P+ L PQ+ ++     A GI      G E
Sbjct: 61  LDWRPQFRVDAVPTYKAHRVEEGSDGSSEEVPDTLTPQVDMIMDVLAAAGIATAGAVGLE 120

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHVI 169
           ADD++ T     E+E   V ++S D+DL+Q+V+    P   LY      + E      V 
Sbjct: 121 ADDVLGTLA-ATEREDLTV-VVSGDRDLLQVVTDEYVPVRVLYVGRGLSRAELFGPVEVA 178

Query: 170 KKWGIP----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
           +K+G+P     E    L  L GD+ D +PGI G+G KTA+ L+  YG+L  +   A+
Sbjct: 179 EKYGVPGDRAGEAYAELAVLRGDASDGLPGIKGVGEKTASTLMLRYGSLAGLRAAAA 235


>gi|262168682|ref|ZP_06036377.1| probable exodeoxyribonuclease IX [Vibrio cholerae RC27]
 gi|262022800|gb|EEY41506.1| probable exodeoxyribonuclease IX [Vibrio cholerae RC27]
          Length = 210

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 105/191 (54%), Gaps = 2/191 (1%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT        
Sbjct: 14  WRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVATLACKVAAH 73

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
              VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++     LTG S  
Sbjct: 74  QEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYWGLTGVSSS 133

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
            IPG+ GIG K A  +L ++ ++E     AS     K R+ +  + E AR+ +++  L+T
Sbjct: 134 QIPGVAGIGPKAAKEILNQFSSIEEAY--ASPELPAKYRKKLDPHIEMARICKQVSALKT 191

Query: 252 DVPITIPLEHL 262
           D+ +   L+ +
Sbjct: 192 DIELGFNLQDI 202


>gi|256825236|ref|YP_003149196.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Kytococcus
           sedentarius DSM 20547]
 gi|256688629|gb|ACV06431.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Kytococcus
           sedentarius DSM 20547]
          Length = 316

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 133/277 (48%), Gaps = 35/277 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  YRAF+  P   R  D  P NAI G  +M   L+ + R  ++     + +D
Sbjct: 6   LMLIDAASLYYRAFHGVPDRRRSADAPPNNAIRGLVDMTASLIAHRRPAALV----MCWD 61

Query: 67  ---YPAVTFRNEIYPDYKANR----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
               PA  FR E  P YK +R             P  L+PQ+P++     A GI  +   
Sbjct: 62  DDWRPA--FRVEAIPSYKQHRLAAGDTTGTTEDTPADLVPQVPVIVELLAALGIARVGAA 119

Query: 114 GFEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLV---SPTTCLYDT---VKE-EKID 164
           G+EADD+I T   + E+      V +++ D+DL QLV   +  + LY     V++ + +D
Sbjct: 120 GYEADDVIGT---LVERTAGRRPVEVVTGDRDLFQLVDDAAGVSVLYTARGGVRDADLVD 176

Query: 165 IEHVIKKWGIPPEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
              +++K+G+   +    +  L GD  D +PG+ GIG KTA  LL  +G+L  +L    R
Sbjct: 177 ESWLVQKYGLASGRAYAEMAVLRGDPSDGLPGVQGIGEKTAVQLLDTFGSLAGVLEALDR 236

Query: 224 IKQK---KRRENILEYAETARLSRKLVMLRTDVPITI 257
              +    RR  + E  E    + ++V +  D P+ +
Sbjct: 237 GDDRLKGARRTRLEEGREYLAAAPQVVDVARDAPVEL 273


>gi|225460702|ref|XP_002267236.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 366

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 132/262 (50%), Gaps = 32/262 (12%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG--------------I 107
           AVI       +R ++ P YKA+R K  +    QLP  R ++ + G              +
Sbjct: 110 AVIDGERCNEYRQKLLPSYKAHRRKFSK----QLPSQRFSSVSAGRSRQVVRDVLRKCNV 165

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKI 163
           P ++I+G EADD++AT      + G+ V I S DKD  QL+S    +   + E       
Sbjct: 166 PVLKIEGCEADDVVATLVGQVLQRGYRVVIASPDKDFKQLISEEVQIVMPMPEFGRWSFY 225

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILI 219
            ++H I ++   P   + L+ + GD +D +PGI    PG G KTA  LL+++G+LEN L+
Sbjct: 226 TLKHYIAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLEN-LL 284

Query: 220 NASRIKQKKRR--ENIL-EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI--S 274
           NA+ ++   R+  +N L +YA+  R + +++ LR DV + +  E L   D     ++  +
Sbjct: 285 NAAAVRTVGRQYAQNALTKYADFLRRNYEILSLRRDVDVQLEEEWLFDRDSRNDSVVLSN 344

Query: 275 FLKALEFTKLINRVATTYDCDA 296
           F K L  T+ +    T++  D 
Sbjct: 345 FFKLLGETQKLTNQNTSHSSDG 366


>gi|284047294|ref|YP_003397634.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Conexibacter woesei DSM 14684]
 gi|283951515|gb|ADB54259.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Conexibacter woesei DSM 14684]
          Length = 289

 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 123/261 (47%), Gaps = 14/261 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L  VD  S +YRA++A P   +   G+PVNA+ G  N + +++ +    ++     +   
Sbjct: 5   LLAVDAPSLLYRAWFALPDSIKGAGGMPVNALLGATNAILRIVADRGPRAVV----ICNG 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A  +R E Y  Y A+RP +P+ L  Q        + FG         EADD++ +++ 
Sbjct: 61  AEAARYRVERYAGYHADRPPVPDGLAAQFARAGELFEGFGWTLAGSDELEADDLLHSFSL 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCL 182
              + G    +++ D+D+ Q  + T T LY        E++    V +++GIPP  +   
Sbjct: 121 AEVEAGGGALLMTGDRDMFQCATDTVTVLYLKTGVRGFEEMTPAAVEQRYGIPPALVPDF 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI----NASRIKQKKRRE--NILEY 236
            AL GD  D +PG  GIG K AA LL+ +G+LE  L        R+    R +   + +Y
Sbjct: 181 IALRGDPSDGLPGARGIGEKGAADLLRRHGSLEAALAAPDGEKPRVATALREQAGELRDY 240

Query: 237 AETARLSRKLVMLRTDVPITI 257
              A L R  V L  D P+ +
Sbjct: 241 LAIATLQRVPVALPADRPLDL 261


>gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 798

 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 172/387 (44%), Gaps = 49/387 (12%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           +K+F E+E   K+ HN+K+D  V  R GI +RG+  D  LM++  D    S  +    + 
Sbjct: 348 VKRFLEDERVRKLAHNLKFDHQVSAREGIEVRGWLHDTQLMAFFADENMMSKSLDDCTRV 407

Query: 512 WL----SYTRK---EILKSRKSSIPIDKI--SDSQVQEHAIEN-----SNVILQLWLLLR 557
           W+     Y       I KS+   +P D I  +D +V ++ + N     ++  L+L   L 
Sbjct: 408 WVPEMAGYADNFNMAIDKSKMMDVPPDDILDADGKVVQYGMRNYAGGDTDACLRLAQRLD 467

Query: 558 PKLIVE--KLLHVYERLDKPMIDVVSQM-EITGIQIDQDLLKQVSAEISKNLLSLEENI- 613
            K++ E  +    Y R+  P I   +++ E  G+ +D++ L+ ++ ++++   +  + I 
Sbjct: 468 -KILREDPRQYQCYRRIQMPAIIAFAKVVERYGLSVDKEHLRSLADQVAQYTDAKYDEIV 526

Query: 614 ----------YDLSGEKFNLSSPKQLGDILFTKLKFPSGAK--TKTGQWKTTAQDLEQIN 661
                     Y   GE+ + +    + DILF K  F    K  TK+      AQ +  ++
Sbjct: 527 RLIPPALRRDYLRRGEEISFTRDVVMRDILFGKKGFGLTPKVFTKSTAKLPPAQRVPSVS 586

Query: 662 CGDN------------PIIKNILEWRQLSKIKSTYADSLPNHIN-----KRTQRVHTFYS 704
             D+              +   +++ +  K+ +TY  S                ++  Y 
Sbjct: 587 TKDHMPYFEDAPGNAGRFVTGYIDFLKQQKLITTYIGSEEKQSGFWQYIAPDGAIYPSYK 646

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
           L +T+TGR AS  PN QN P +    +   + F + P  KL+SAD SQIELRI A +A  
Sbjct: 647 LHATVTGRSASDNPNGQNFPKRGRFAKSYNKVFKARPGYKLVSADLSQIELRIAAWMANE 706

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIE 791
             + +++    DIH    A   G   E
Sbjct: 707 PEMLRIYRADGDIHASTGAATAGWTDE 733


>gi|213423791|ref|ZP_03356771.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 304

 Score =  104 bits (260), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 88/352 (25%), Positives = 149/352 (42%), Gaps = 57/352 (16%)

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+PPE ++   AL G
Sbjct: 4   AEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFLALMG 63

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETAR 241
           DS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  + A 
Sbjct: 64  DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAY 123

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A   +P
Sbjct: 124 LSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAKGAKP 183

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                 T     + I+               S S+  + ++ E                 
Sbjct: 184 AAKPQET-----VVID--------------ESPSEPAAALSYE----------------- 207

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                +Y  I++   ++ W++KL+     +F   TD++D   +  + ++ + ++      
Sbjct: 208 -----NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPGVAAY 261

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             V   ++D     S+         +  L  LK   E+E   K+G N+KYD+
Sbjct: 262 VPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDR 304


>gi|296081158|emb|CBI18184.3| unnamed protein product [Vitis vinifera]
          Length = 380

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 132/262 (50%), Gaps = 32/262 (12%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG--------------I 107
           AVI       +R ++ P YKA+R K  +    QLP  R ++ + G              +
Sbjct: 124 AVIDGERCNEYRQKLLPSYKAHRRKFSK----QLPSQRFSSVSAGRSRQVVRDVLRKCNV 179

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKI 163
           P ++I+G EADD++AT      + G+ V I S DKD  QL+S    +   + E       
Sbjct: 180 PVLKIEGCEADDVVATLVGQVLQRGYRVVIASPDKDFKQLISEEVQIVMPMPEFGRWSFY 239

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILI 219
            ++H I ++   P   + L+ + GD +D +PGI    PG G KTA  LL+++G+LEN L+
Sbjct: 240 TLKHYIAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLEN-LL 298

Query: 220 NASRIKQKKRR--ENIL-EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI--S 274
           NA+ ++   R+  +N L +YA+  R + +++ LR DV + +  E L   D     ++  +
Sbjct: 299 NAAAVRTVGRQYAQNALTKYADFLRRNYEILSLRRDVDVQLEEEWLFDRDSRNDSVVLSN 358

Query: 275 FLKALEFTKLINRVATTYDCDA 296
           F K L  T+ +    T++  D 
Sbjct: 359 FFKLLGETQKLTNQNTSHSSDG 380


>gi|91224626|ref|ZP_01259887.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|91190514|gb|EAS76782.1| DNA polymerase I [Vibrio alginolyticus 12G01]
          Length = 680

 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 216/503 (42%), Gaps = 50/503 (9%)

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE---HAIENSNVILQLW 553
           ++ R  + + ++A ++  + R  ++KS      ID  S    +E   +A E++ V  +L+
Sbjct: 193 ENNRIRYALNTVASRYDIHHRFNLVKSDLQHSFIDYDSGEFTREQIHYAAEDAIVAAKLY 252

Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
           L    +L ++   H    ++ P +   + ME  G+ +D++    V    +  L +L   +
Sbjct: 253 LPQMQQLTLQGCYHHLITVEMPWVTTNAAMEWHGVSVDREKCNAVLNASTPKLETLRSQL 312

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ---DLEQINCGDNPIIKN 670
             +  +  N    K+     F +L        K G++    Q   DL  I+    P I  
Sbjct: 313 AQMGLDNPNSHQQKE---TFFRQLNLLDHF-NKGGKYSFKLQLLKDLAHIH----PAIGL 364

Query: 671 ILEWRQLSKIKSTYADSL--PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           + E+   SK+++   D L  P  I   + RVH  +     +TGR +   PNL  +P    
Sbjct: 365 LAEF---SKVQAIERDILLRPTIIGSDS-RVHPEHKQLEVVTGRQSCASPNLLGLP---- 416

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
               +R   I      +  ADYSQIE+ I A +     L   F N+ DI+ ++A E + +
Sbjct: 417 --GAMRPLIIPKKGNGIGEADYSQIEVAITAAVYSDKNLIAKF-NAGDIYTVMAQEFYAI 473

Query: 789 NIEKVSPQM------------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           ++++   Q             R   KT    I+YG+SPF L ++L I   EA   + R+ 
Sbjct: 474 DLDEEDRQCDSDTFKHKHKDKRDIMKTCVLGILYGLSPFGLGSRLEISELEAKQLMNRFL 533

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +   +E         GYV T  G  +H    N+   S    N    +N P QG+A
Sbjct: 534 AMFPTLKHMMETAPQQAAYRGYVSTSTG--LHRHRSNNGALSRHETN--WMVNMPAQGTA 589

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL--- 953
           A + + A   +++  + +    K++L +HD  +FE P + +     +  + M +A +   
Sbjct: 590 AALFKLAGNRLYQLYKPYN--AKLVLAMHDAFIFEAPLDHMEEVGTLTTNVMIQAVIEHF 647

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
           P++  R+ L  N      W ++ 
Sbjct: 648 PELKPRIDL--NDSAPQCWTKDG 668


>gi|331697087|ref|YP_004333326.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951776|gb|AEA25473.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
          Length = 312

 Score =  104 bits (259), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 30/228 (13%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+D +S  +RA+Y  P      DG PVNA+ GF +M+ +L+   R   + +   +  D+ 
Sbjct: 2   LLDAASMYFRAYYGVPESITAPDGTPVNAVRGFTDMVARLVAERRPTRLVA--CLDLDWR 59

Query: 69  AVTFRNEIYPDYKANR--------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
              FR +  P YKA+R               ++P+ L PQ+P++     A GI      G
Sbjct: 60  P-RFRVDALPSYKAHRVAGTERDTVPYGVPEEVPDTLAPQVPILLEVLAAAGIATGGAVG 118

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV----SPTTCLY---DTVKEEKIDIEH 167
            EADD+I T      +   AV+++S D+DLMQ+V    +P   +Y      K E +  + 
Sbjct: 119 HEADDVIGTLA--GRERTDAVSVVSGDRDLMQVVREEPTPVRLIYVGRGLAKAETLGPKE 176

Query: 168 VIKKWGIP----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
           V +K+G+P     E    +  L GD  D +PG+PG+G KTAA L+  +
Sbjct: 177 VAEKYGVPVDRAGEAYAEMAMLRGDPSDGLPGVPGVGAKTAATLVSRF 224


>gi|150404365|gb|ABR68496.1| DNA polymerase I [Lactobacillus casei]
 gi|150404409|gb|ABR68518.1| DNA polymerase I [Lactobacillus casei]
 gi|150404423|gb|ABR68525.1| DNA polymerase I [Lactobacillus casei]
 gi|150404433|gb|ABR68530.1| DNA polymerase I [Lactobacillus casei]
 gi|150404437|gb|ABR68532.1| DNA polymerase I [Lactobacillus casei]
 gi|225349774|gb|ACN87812.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 118/213 (55%), Gaps = 11/213 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           +R G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P  
Sbjct: 34  NRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP-- 91

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++       SN +  L   L   L  +    ++  ++ P+  V+++MEI GI ++
Sbjct: 92  --EDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLN 149

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + 
Sbjct: 150 AKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YS 208

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           T+   L ++    +PI+++IL++R  +K+ STY
Sbjct: 209 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTY 240


>gi|329296361|ref|ZP_08253697.1| 5'-3' exonuclease [Plautia stali symbiont]
          Length = 255

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 118/213 (55%), Gaps = 11/213 (5%)

Query: 45  LWKLLQNSRKESIASHFAVIFD----YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
           L +LL ++R     +H   +FD     P   +R+++ PDYKA RP +P+ L  ++  ++ 
Sbjct: 33  LHQLLGHTR----PTHVVAVFDSHDRQPG--WRHQLLPDYKAGRPPMPDDLQQEMASLQA 86

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           A +A G+     +  EADD+ AT        G   TI+STDK   QL++P+  + D  ++
Sbjct: 87  AFEASGVSCWIAEHDEADDLAATLAVKMADAGHQATIVSTDKGYCQLLAPSIRIRDYFQK 146

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
             +D+  + +++G+ P ++     L G S   IPG+ GIG K+A  LLQ++G+LE +   
Sbjct: 147 RWLDVPFIEQEFGVAPAQLADYWGLCGISSSKIPGVLGIGPKSARELLQQFGSLEALYQQ 206

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
             ++ +K +++ + ++   A + R++  L+ D+
Sbjct: 207 LDQVPEKWQKK-LRDHRAIAEVCRQVSTLKRDL 238


>gi|150404367|gb|ABR68497.1| DNA polymerase I [Lactobacillus casei]
 gi|150404369|gb|ABR68498.1| DNA polymerase I [Lactobacillus casei]
 gi|150404385|gb|ABR68506.1| DNA polymerase I [Lactobacillus casei]
 gi|150404393|gb|ABR68510.1| DNA polymerase I [Lactobacillus casei]
 gi|150404395|gb|ABR68511.1| DNA polymerase I [Lactobacillus casei]
 gi|150404435|gb|ABR68531.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 118/213 (55%), Gaps = 11/213 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           +R G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P  
Sbjct: 34  NRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYDKGAKRQVP-- 91

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++       SN +  L   L   L  +    ++  ++ P+  V+++MEI GI ++
Sbjct: 92  --EDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLN 149

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + 
Sbjct: 150 AKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YS 208

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           T+   L ++    +PI+++IL++R  +K+ STY
Sbjct: 209 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTY 240


>gi|150404373|gb|ABR68500.1| DNA polymerase I [Lactobacillus casei]
 gi|150404375|gb|ABR68501.1| DNA polymerase I [Lactobacillus casei]
 gi|150404377|gb|ABR68502.1| DNA polymerase I [Lactobacillus casei]
 gi|150404381|gb|ABR68504.1| DNA polymerase I [Lactobacillus casei]
 gi|150404417|gb|ABR68522.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 118/213 (55%), Gaps = 11/213 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           +R G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P  
Sbjct: 34  NRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP-- 91

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++       SN +  L   L   L  +    ++  ++ P+  V+++MEI GI ++
Sbjct: 92  --EDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLN 149

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + 
Sbjct: 150 AKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YS 208

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           T+   L ++    +PI+++IL++R  +K+ STY
Sbjct: 209 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTY 240


>gi|300923223|ref|ZP_07139278.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 182-1]
 gi|300420532|gb|EFK03843.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 182-1]
          Length = 179

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 98/178 (55%), Gaps = 1/178 (0%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +PE L  ++P +R A +  G+P     G EADD+ AT      + G   TI+STDK   Q
Sbjct: 1   MPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAGHQATIVSTDKGYCQ 60

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L+SPT  + D  ++  +D   + K++G+ P+++     L G S   +PG+ GIG K+A  
Sbjct: 61  LLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQ 120

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           LL E+ +LE I  N   + +K R++ +  + E A L R +  L+TD+ I   L+ L L
Sbjct: 121 LLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 177


>gi|150404363|gb|ABR68495.1| DNA polymerase I [Lactobacillus casei]
 gi|150404397|gb|ABR68512.1| DNA polymerase I [Lactobacillus casei]
 gi|150404399|gb|ABR68513.1| DNA polymerase I [Lactobacillus casei]
 gi|150404401|gb|ABR68514.1| DNA polymerase I [Lactobacillus casei]
 gi|150404407|gb|ABR68517.1| DNA polymerase I [Lactobacillus casei]
 gi|150404413|gb|ABR68520.1| DNA polymerase I [Lactobacillus casei]
 gi|150404415|gb|ABR68521.1| DNA polymerase I [Lactobacillus casei]
 gi|150404439|gb|ABR68533.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 118/213 (55%), Gaps = 11/213 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           +R G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P  
Sbjct: 34  NRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDMPRDEDIYGKGAKRQVP-- 91

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++       SN +  L   L   L  +    ++  ++ P+  V+++MEI GI ++
Sbjct: 92  --EDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLN 149

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + 
Sbjct: 150 AKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YS 208

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           T+   L ++    +PI+++IL++R  +K+ STY
Sbjct: 209 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTY 240


>gi|322492142|emb|CBZ27416.1| DNA polymerase theta (polymerase domain only),putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1171

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 47/277 (16%)

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIE 791
            +R  + +PP   L S D++Q+ELR+LAH++    L +    ++D+  +V A +  + +I+
Sbjct: 898  LRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASVLRLPSID 957

Query: 792  KVSPQMRRHAKTINFSIIYGISP-------------FRLATQLRIPRS-----------E 827
             V PQ R+  K I + ++YG+ P             F  + Q +  R             
Sbjct: 958  HVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEFATSEQQQHHRGGEASSPGPAPMS 1017

Query: 828  AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            A D ++R+ H +P I  Y+ +T+    ++  VET+ GR+    E ++      N   + A
Sbjct: 1018 AHDLLRRFHHVYPRIESYLRETRQEALRSFAVETLSGRKSLIAEKDA------NRRRQRA 1071

Query: 888  INAPIQGSAADITRRAMISVHKS-------LEDHKLATKMLLQIHDELVFEVPE---EEI 937
            I   +QG AAD+   AM +VH+        L    LA  +++ +HDELV+ VP    EE+
Sbjct: 1072 IAQAVQGGAADVLHSAMRAVHQQRHSFLPYLPAATLA--LVMSVHDELVYAVPRAAIEEV 1129

Query: 938  TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                Q ++    +     + L VPL V ++V  ++ E
Sbjct: 1130 VRGVQRVLEDQARV----LRLAVPLPVTVRVGYSFGE 1162


>gi|62327214|ref|YP_223952.1| DNA polymerase [Phage phiJL001]
 gi|50059532|gb|AAT69504.1| DNA polymerase [Phage phiJL001]
          Length = 631

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 128/588 (21%), Positives = 241/588 (40%), Gaps = 85/588 (14%)

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM---RGFEDIMLMSYVL 496
            G N    ++L Y+K  F+      +G N+ YD       GI M   + + D+++    +
Sbjct: 74  NGDNLDAAQVLRYIKDQFKTFDGELVGANLGYDLDWAWAEGIDMPLVKAYRDVLIAEPCI 133

Query: 497 DSGRSSHDIASIAQKWLSYTRKEIL---KSRKSSIPIDK--------ISDSQVQEHAIEN 545
           +  +  + + S+A  WL   + + L    +R   +  D         +    V  +  ++
Sbjct: 134 NENKFFYSLDSVAGDWLGEQKSKTLMIEAARAYGMRKDSELGSYIHLLPARYVGVYGEDD 193

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             + L++ L L+ K I ++ +     L+  ++ V+ +M   G+++D+D L +V    +K 
Sbjct: 194 CALPLRI-LELQEKEIEQQGIQAVWDLESKVLPVLVRMRQRGVKVDEDRLMEVEIRATKE 252

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
                + I  ++G         + G IL   L+                    + +C   
Sbjct: 253 RRDASDLITRVTGVAVGPEDAMKKG-ILVDALRAAGHQLNADDAVDKHFIARHEGHCEVT 311

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH-TFYSLAS----------TMTGRLA 714
             +  + +W  L K+     D + NH+     R+H +F  +A+             GRL+
Sbjct: 312 AALGRLRKWDTLRKLA---IDPVKNHMV--NGRIHCSFNQMAADKDNGKGTKGARYGRLS 366

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA-DYSQIELRILAHIAKITPLYQVFEN 773
               N+Q  P + +    I R    P    L +A DYSQ E R+L H A+I  +    E 
Sbjct: 367 CEHVNMQQQPSRDEDIAPIWRRIYRPDDGGLWAALDYSQQEPRMLVHFAEICGMPGASEA 426

Query: 774 S--------LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           +         D H+M+A ++ G++        R+ AK I   + YG+   +L   L++P 
Sbjct: 427 AQKYRDDPDTDNHQMMA-DMAGIS--------RKEAKIIFLGLCYGMGQEKLCHDLQLPT 477

Query: 826 S---------------EAADYIKRYFHRFPGIHEYIEKTKNFVR----QNGYVETIFGRR 866
                            A D   R F  F     ++++ +N  +    + G++ T+ GRR
Sbjct: 478 KIIELKKGPRKGQKMVVAGDEGARLFETFHAKVPFVKQMENLCKDRATERGFITTLLGRR 537

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
             +         +       A+N  IQGS+AD T+ AM++  ++        ++ LQ+HD
Sbjct: 538 CRF---KMGDDGLNYWGTHKALNRLIQGSSADQTKAAMVAADEA------GYELQLQVHD 588

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+   V   E    ++ I   M + C   + + VP KV+++V  +W E
Sbjct: 589 EIDLTVESRE---QAEKIAEIM-RTC---VEINVPSKVDVEVGVSWGE 629


>gi|300898139|ref|ZP_07116505.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 198-1]
 gi|301027532|ref|ZP_07190869.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 69-1]
 gi|300358197|gb|EFJ74067.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 198-1]
 gi|300395040|gb|EFJ78578.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 69-1]
          Length = 179

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 98/178 (55%), Gaps = 1/178 (0%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +PE L  ++P +R A +  G+P     G EADD+ AT      + G   TI+STDK   Q
Sbjct: 1   MPEELHDEMPALRTAFEQRGVPCWSASGNEADDLAATLAVKVTQAGHQATIVSTDKGYCQ 60

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L+SPT  + D  ++  +D   + K++G+ P+++     L G S   +PG+ GIG K+A  
Sbjct: 61  LLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQ 120

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           LL E+ +LE I  N   + +K R++ +  + E A L R +  L+TD+ I   L+ L L
Sbjct: 121 LLVEFQSLEGIYENLDAVAEKWRKK-LETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 177


>gi|86171563|ref|XP_966236.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
 gi|46361202|emb|CAG25066.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
          Length = 1444

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 155/347 (44%), Gaps = 74/347 (21%)

Query: 669  KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            +NI  +R+  K+   Y ++LP +I K T ++H  ++     TGRL+  +PNLQNI  +  
Sbjct: 1014 RNIKLYRESKKLVQNYIENLPKYIQKNTNKIHCNFNQIGASTGRLSCDQPNLQNIHSRFR 1073

Query: 729  LGQKIR------------------RAFISPPT----------------------KKLISA 748
                ++                  +  IS                         K LI+ 
Sbjct: 1074 CAISLKGKEENDTHDNNNNNNNIPQIHISTNNVSTNNVPMNIMSSTYPLYTMNKKNLITF 1133

Query: 749  DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            DY Q+EL ++A+++    L ++  N  D+    A  +F  N   V+ ++RR  KT+ + I
Sbjct: 1134 DYKQMELFVMAYLSFDEQLLKLL-NYSDVFIETAKVLFNTN--DVTNELRRMTKTVIYGI 1190

Query: 809  IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            +YG +   LA  L I  + A++ I+ +F  FP ++ +++  K  V+    V T+ GR+  
Sbjct: 1191 LYGQTENGLAKSLLISDTLASNLIENFFQFFPNVYRFMQMQKFLVKHMNCVYTLIGRK-- 1248

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED--------------- 913
               I  P  +I+N   R ++N PIQG AADI + +++S    L +               
Sbjct: 1249 --RIILP--NIKN-KYRISMNTPIQGCAADIMKFSLLSCFSVLNNNIYNNNKLLKMNNIN 1303

Query: 914  ----HKLA-----TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
                HK       T ++LQ+HDEL+ E   +      Q++   +E A
Sbjct: 1304 PLIIHKNQAFLNPTNLILQVHDELLLESEHDATKYIIQLLNPILENA 1350


>gi|157273314|gb|ABV27213.1| DNA polymerase I [Candidatus Chloracidobacterium thermophilum]
          Length = 175

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/144 (38%), Positives = 82/144 (56%), Gaps = 5/144 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + LFL+D  + IYRA+YA   L+ K  G P NA+ GF ++L KL    +K     +  V 
Sbjct: 9   HRLFLIDAMAHIYRAYYAVRGLATKA-GQPTNAVFGFTSILRKL----QKTYTPEYLVVA 63

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D  A +FR   +  YKA+R ++P  L  Q+P++     A  IP +++ G+EADD+I T 
Sbjct: 64  MDSAAPSFRKAWFDGYKAHRAEMPADLQEQIPVIEKVCDALRIPRVKVDGYEADDLIGTL 123

Query: 125 TYIAEKEGFAVTIISTDKDLMQLV 148
             +A + G    I+S DKD+ QLV
Sbjct: 124 ARLAVEHGLEAVIVSNDKDMTQLV 147


>gi|270620199|ref|ZP_06221866.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270317757|gb|EFA29140.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 150

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 5/139 (3%)

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
           GIP + ++G EADD+I T    A   G  V I + DKD+ QLV     L +T+    +D 
Sbjct: 1   GIPLLVVEGIEADDVIGTLALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDR 60

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           E VI+K+GIPPE ++   AL GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ 
Sbjct: 61  EGVIEKYGIPPELIIDYLALMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA 120

Query: 226 QKKRRENILEYAETARLSR 244
                E  ++Y    R+SR
Sbjct: 121 -----ELPIKYRSCRRVSR 134


>gi|120404410|ref|YP_954239.1| 5'-3' exonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119957228|gb|ABM14233.1| 5'-3' exonuclease [Mycobacterium vanbaalenii PYR-1]
          Length = 323

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 119/253 (47%), Gaps = 36/253 (14%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF- 65
           L L+DG+S  +R+++  P      DG PVNA+ GF + +  ++   R      H  V+  
Sbjct: 6   LVLLDGASMWFRSYFGVPSSITAPDGRPVNALRGFLDAVATVITRER-----PHRLVVCR 60

Query: 66  -DYPAVTFRNEIYPDYKANR----------------PKIPEMLLPQLPLVRLATQAFGIP 108
            D     +R ++ P YKA+R                 ++P+ L PQ+ ++     AFGI 
Sbjct: 61  DDDWRPQWRVDLIPSYKAHRVAVPAEEANPPTDVDVEEVPDDLTPQVDMIMEMLDAFGIA 120

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEE 161
               Q  EADD++ T      ++   V ++S D+DL+QLV     P   LY      +  
Sbjct: 121 TAGAQQCEADDVLGTLAGRETRD--PVVVVSGDRDLLQLVRDEPVPVRVLYLGRGLARAT 178

Query: 162 KIDIEHVIKKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
                 V + + +P ++       L  L GD  D +PG+PGIG KTAA LL ++G+LE I
Sbjct: 179 TYGPVEVSETYNVPVDRAGPAYAELALLRGDPSDGLPGVPGIGEKTAATLLAQHGSLEAI 238

Query: 218 LINASRIKQKKRR 230
           L  A   K K  R
Sbjct: 239 LAAAQDPKSKLSR 251


>gi|150404387|gb|ABR68507.1| DNA polymerase I [Lactobacillus casei]
 gi|150404391|gb|ABR68509.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|150404419|gb|ABR68523.1| DNA polymerase I [Lactobacillus casei]
 gi|150404429|gb|ABR68528.1| DNA polymerase I [Lactobacillus casei]
 gi|225349752|gb|ACN87801.1| PolA [Lactobacillus casei]
 gi|225349762|gb|ACN87806.1| PolA [Lactobacillus casei]
 gi|225349764|gb|ACN87807.1| PolA [Lactobacillus casei]
 gi|225349768|gb|ACN87809.1| PolA [Lactobacillus casei]
 gi|225349770|gb|ACN87810.1| PolA [Lactobacillus casei]
 gi|225349772|gb|ACN87811.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 119/213 (55%), Gaps = 11/213 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           +R G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P  
Sbjct: 34  NRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP-- 91

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++       S+ +  L   L   L  ++   ++  ++ P+  V+++MEI GI ++
Sbjct: 92  --EDDKLFGQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLN 149

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + 
Sbjct: 150 AKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YS 208

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           T+   L ++    +PI+++IL++R  +K+ STY
Sbjct: 209 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTY 240


>gi|150404389|gb|ABR68508.1| DNA polymerase I [Lactobacillus casei]
 gi|225349760|gb|ACN87805.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 118/213 (55%), Gaps = 11/213 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           +R G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P  
Sbjct: 34  NRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP-- 91

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++       S+ +  L   L   L  +    ++  ++ P+  V+++MEI GI ++
Sbjct: 92  --EDDKLFGQFARKSDALFALRPDLTGDLKKQAQTDLFTDMEMPLSRVLAEMEIQGITLN 149

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + 
Sbjct: 150 AKALKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YS 208

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           T+   L ++    +PI+++IL++R  +K+ STY
Sbjct: 209 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTY 240


>gi|150404361|gb|ABR68494.1| DNA polymerase I [Lactobacillus casei]
 gi|150404383|gb|ABR68505.1| DNA polymerase I [Lactobacillus casei]
 gi|150404403|gb|ABR68515.1| DNA polymerase I [Lactobacillus casei]
 gi|150404405|gb|ABR68516.1| DNA polymerase I [Lactobacillus casei]
 gi|150404411|gb|ABR68519.1| DNA polymerase I [Lactobacillus casei]
 gi|150404421|gb|ABR68524.1| DNA polymerase I [Lactobacillus casei]
 gi|150404425|gb|ABR68526.1| DNA polymerase I [Lactobacillus casei]
 gi|150404427|gb|ABR68527.1| DNA polymerase I [Lactobacillus casei]
 gi|150404431|gb|ABR68529.1| DNA polymerase I [Lactobacillus casei]
 gi|225349756|gb|ACN87803.1| PolA [Lactobacillus casei]
 gi|225349758|gb|ACN87804.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 119/213 (55%), Gaps = 11/213 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           +R G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P  
Sbjct: 34  NRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP-- 91

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++       S+ +  L   L   L  ++   ++  ++ P+  V+++MEI GI ++
Sbjct: 92  --EDDKLFGQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLN 149

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + 
Sbjct: 150 AKTLKAMGTEFSQSIKILEEKIYAEAGLKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YS 208

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           T+   L ++    +PI+++IL++R  +K+ STY
Sbjct: 209 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTY 240


>gi|150404371|gb|ABR68499.1| DNA polymerase I [Lactobacillus casei]
 gi|150404379|gb|ABR68503.1| DNA polymerase I [Lactobacillus casei]
 gi|225349754|gb|ACN87802.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 118/213 (55%), Gaps = 11/213 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           +R G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P  
Sbjct: 34  NRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP-- 91

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++       S+ +  L   L   L  +    ++  ++ P+  V+++MEI GI ++
Sbjct: 92  --EDDKLFGQFARKSDALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLN 149

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + 
Sbjct: 150 AKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YS 208

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           T+   L ++    +PI+++IL++R  +K+ STY
Sbjct: 209 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTY 240


>gi|71662488|ref|XP_818250.1| DNA polymerase theta (polymerase domain only) [Trypanosoma cruzi
           strain CL Brener]
 gi|70883490|gb|EAN96399.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 147/323 (45%), Gaps = 48/323 (14%)

Query: 689 PNHINKRTQ---RVHTFYSLASTMTGRLASLEPNLQ----NIPIK-------------TD 728
           P+H+  + +    VH  +S+    T RL    P LQ    N PI              T+
Sbjct: 560 PHHVGAQYRLFFSVHAKWSVHHATTSRLFCSRPCLQTVAKNPPISRTAPSSSPPVTIFTN 619

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
               +R  +  PP   L+S D++QIELR++AH++    L Q      D+   +A  +  +
Sbjct: 620 PEWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRGGSDVLAEMALRVMQL 679

Query: 789 -NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSE-----AADYIKRYF 836
             +  V+P +R+  K + + ++YG+ P  L  +LR       P +E     A  +++ + 
Sbjct: 680 PRLADVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKETTPSAEQPPLSARQFLRSFN 739

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P +  ++  T+          T+ G R   D    P     N  ++ A+   IQG A
Sbjct: 740 QCYPAVQGFLRSTRLRAFHEKRCTTLNGLR---DLSGEPDG---NRRKQMAVALAIQGGA 793

Query: 897 ADITRRAMISVHKSLEDHKL-------ATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A I   AM+ VH+  + H+L       A  ++L +HDELV+ VP+  ++  +  I   +E
Sbjct: 794 AVILHHAMVEVHE--KRHELLPFLPAAAVALVLSVHDELVYAVPDSAVSIVAPKIKQILE 851

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
           +     ++L VPL V++K   ++
Sbjct: 852 QQAA-ALSLSVPLPVSMKAGKSF 873


>gi|119470909|ref|ZP_01613493.1| exonuclease IX [Alteromonadales bacterium TW-7]
 gi|119445931|gb|EAW27211.1| exonuclease IX [Alteromonadales bacterium TW-7]
          Length = 257

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 127/269 (47%), Gaps = 26/269 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDG------LPVNAIAGFCNMLWKLLQNSRKESIAS 59
           HL L+D  + I R +      ++KH             +A  C  + ++         A+
Sbjct: 4   HLLLIDALNLIRRIYAVDA--NQKHSNEKQLVLTCSERVAQACKKMLRITD-------AT 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H   +FD    ++R   Y  YK +R  +PE L   L   + A +  GI   E    EADD
Sbjct: 55  HAIAVFDGDK-SWRYHFYEHYKHSRAPMPETLKSALHHFKSAIEETGIVVFEPINDEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT    A       TI+STDK  +  ++    +YD  K + +D   + +++G+   ++
Sbjct: 114 IIATLACKAADNKITSTIVSTDKGFLPYLNSEIHIYDYFKRQHLDEPAIHERFGVDKNRL 173

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN----LENILINASRIKQKKRRENILE 235
           V   AL GD  ++IPG+ G+G K+A  L+  Y +    L + L+N+    +KK   N+  
Sbjct: 174 VDFWALAGDKTNDIPGVKGVGIKSAQQLVNNYTSINEALSDELLNSGL--RKKLETNMDM 231

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLIL 264
           Y     +S++LV LRTD+ +   L+ L L
Sbjct: 232 YV----ISKQLVSLRTDINLGFSLKQLRL 256


>gi|157870107|ref|XP_001683604.1| DNA polymerase theta (polymerase domain only) [Leishmania major
            strain Friedlin]
 gi|68126670|emb|CAJ04554.1| putative DNA polymerase theta [Leishmania major strain Friedlin]
          Length = 1170

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 137/275 (49%), Gaps = 45/275 (16%)

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIE 791
            +R  + +PP   L S D++Q+ELR+LAH++    L +    ++D+  +V A +  + +I+
Sbjct: 899  LRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASVLRLPSID 958

Query: 792  KVSPQMRRHAKTINFSIIYGISPFRL------------ATQLRIPRSEAA---------- 829
            +V PQ R+  K + + ++YG+    +            A++ +  R EA+          
Sbjct: 959  RVRPQQRQAVKVVVYGLLYGMGLESMDVRIKKINEEFAASEQQQHRGEASSSAPAPMPAR 1018

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            D ++R+   +P I  Y+ +T+    ++  VET+ GR+    E ++      N  ++ AI 
Sbjct: 1019 DLLRRFHRVYPRIESYLRETRQEALRSFAVETLSGRKSLIAEKDA------NRRKQRAIA 1072

Query: 890  APIQGSAADITRRAMISVHKS-------LEDHKLATKMLLQIHDELVFEVPE---EEITT 939
              +QG AAD+   AM +VH+        L    LA  +++ IHDELV+ VP    +E+  
Sbjct: 1073 QAVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA--LVMSIHDELVYAVPRVAIDEVVR 1130

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              Q I+    +     + L VPL V+++V N + E
Sbjct: 1131 GVQRILEDQARV----LRLAVPLPVSVRVGNCFGE 1161


>gi|160938061|ref|ZP_02085418.1| hypothetical protein CLOBOL_02955 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439055|gb|EDP16810.1| hypothetical protein CLOBOL_02955 [Clostridium bolteae ATCC
           BAA-613]
          Length = 358

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 138/352 (39%), Gaps = 81/352 (23%)

Query: 4   ENHLFLVDGSSFIYRAFYA----------TPLLSRKH--------DGLPVNAIAGFCNML 45
           E    +VDGSS +   +YA          T     KH        DG   N I G    +
Sbjct: 3   ERKFVIVDGSSLLSTCYYAVLPREIMFAKTDEEKEKHYGKILHASDGTYTNGIMGVLKAV 62

Query: 46  WKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAF 105
             LL+  +     ++ A +FD    TFR E+YPDYK  R + PE L  Q  L+    +  
Sbjct: 63  VSLLKKQQ----PAYVAFVFDKTRDTFRRELYPDYKGTRSRTPEPLKQQFVLMERILEEA 118

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---------------- 149
           G   +    +EADD   +  Y   +E   + +++ D D +QLVS                
Sbjct: 119 GFKVLYSDRYEADDYAGSLVYKF-REQVPMVVMTKDHDYLQLVSDEYNVRAWMVQARQEK 177

Query: 150 -PTTC-----LYDTVKEE--------KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
               C     LY   K          +   E V  + G+ P ++  L+ + GD+ DNIPG
Sbjct: 178 AEELCDKYYGLYGLDKASVNLPEKTFEFTAETVYSEEGVWPRQITDLKGIQGDTSDNIPG 237

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------------------------- 230
           + G+    A LLL EYG +E+I       +Q K++                         
Sbjct: 238 VRGVA-SAAPLLLGEYGTVEHIYEVIHEAEQDKKQLKELQDFWKNCLGISRSPYKSLTKT 296

Query: 231 --ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
             E  L     ARLS++L  ++TD+P+   LE      C    L  + + L+
Sbjct: 297 GEEGELCGEAAARLSKELATIKTDIPLDFELEDFSASCCREEVLKEWCRKLD 348


>gi|48696692|ref|YP_024986.1| DNA polymerase I [Vibrio phage VP5]
 gi|40806155|gb|AAR92073.1| DNA polymerase I [Vibrio phage VP5]
          Length = 633

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 115/500 (23%), Positives = 216/500 (43%), Gaps = 82/500 (16%)

Query: 523 SRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +RK+ +P + +     V+++A  ++ + L+LWL  + +LI ++ L      ++ ++  + 
Sbjct: 160 TRKTQMPNLYRAPSGLVRKYACPDAELTLELWLE-QQELIAKRGLEKIVAFERKVMPTLI 218

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           + E  G+++D +  +Q   ++   +   +  ++ L+G +FN +SPKQ+ ++         
Sbjct: 219 RAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREFNPNSPKQVREVF-------- 270

Query: 642 GAKTKTGQWKTTAQD---LEQINCGD------------NPIIKNILEWRQLSKIKSTYAD 686
           GAK + G W  T++D   LE+   G+            +P+   +LE R   K K T+  
Sbjct: 271 GAKEERGVW--TSRDGTVLERTATGNPCLDADALRAMKDPLAAAVLELRSNIKTKDTF-- 326

Query: 687 SLPNHINKRTQRVHTFYSL-------ASTMTGRLASLEPNLQNIPIKTD-LGQKIRRAFI 738
            L  H+ + +     + ++         T TGRL+   P LQ IP +   +   I+ AF+
Sbjct: 327 -LAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRNKRIAAIIKPAFL 385

Query: 739 SPPTKKLISADYSQIELRILAH-IAKITP-LYQVF-EN-SLDIHRMVAAEIFGVNIEKVS 794
               +  + +D +  E+RI AH +A   P + + + EN  LD+H+ V  ++ G+     S
Sbjct: 386 PEEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYAENPELDLHQWV-GDLMGIP-RNAS 443

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRS-------------------EAADYIKRY 835
              + +AK +N  +I+      +A  L +P                     EA   I  Y
Sbjct: 444 YSGQANAKQMNLGMIFNRGDGAVADSLGMPWEWCEFTDKKGDLIRYKKAGPEAKAVIAAY 503

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
             +  G+     + +    + G+++T  GRR+ +   N  KS         A    IQ +
Sbjct: 504 HTQIQGVKTLATRAQKIAEERGWIQTAHGRRLRFP--NGYKSY-------KASGILIQAT 554

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD  +   + +  +L        M+L  HD     V E       ++      K  + +
Sbjct: 555 AADENKENWLRIEDALGSD---GSMILNTHDSYSMSVDENWKPIWERV------KKAVER 605

Query: 956 INLRVPLKVNI-KVSNNWQE 974
             LRVPL +    V  NW E
Sbjct: 606 QTLRVPLLLEFDGVGKNWAE 625


>gi|48696650|ref|YP_024429.1| DNA polymerase I [Vibrio phage VP2]
 gi|40950048|gb|AAR97639.1| DNA polymerase I [Vibrio phage VP2]
          Length = 633

 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 115/500 (23%), Positives = 216/500 (43%), Gaps = 82/500 (16%)

Query: 523 SRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +RK+ +P + +     V+++A  ++ + L+LWL  + +LI ++ L      ++ ++  + 
Sbjct: 160 TRKTQMPNLYRAPSGLVRKYACPDAELTLELWLE-QQELIAKRGLEKIVAFERKVMPTLI 218

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           + E  G+++D +  +Q   ++   +   +  ++ L+G +FN +SPKQ+ ++         
Sbjct: 219 RAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREFNPNSPKQVREVF-------- 270

Query: 642 GAKTKTGQWKTTAQD---LEQINCGD------------NPIIKNILEWRQLSKIKSTYAD 686
           GAK + G W  T++D   LE+   G+            +P+   +LE R   K K T+  
Sbjct: 271 GAKEERGVW--TSRDGTILERTATGNPCLDADALRAMKDPLAAAVLELRSNIKTKDTF-- 326

Query: 687 SLPNHINKRTQRVHTFYSL-------ASTMTGRLASLEPNLQNIPIKTD-LGQKIRRAFI 738
            L  H+ + +     + ++         T TGRL+   P LQ IP +   +   I+ AF+
Sbjct: 327 -LAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRNKRIAAIIKPAFL 385

Query: 739 SPPTKKLISADYSQIELRILAH-IAKITP-LYQVF-EN-SLDIHRMVAAEIFGVNIEKVS 794
               +  + +D +  E+RI AH +A   P + + + EN  LD+H+ V  ++ G+     S
Sbjct: 386 PEEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYAENPELDLHQWV-GDLMGIP-RNAS 443

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRS-------------------EAADYIKRY 835
              + +AK +N  +I+      +A  L +P                     EA   I  Y
Sbjct: 444 YSGQANAKQMNLGMIFNRGDGAVADSLGMPWEWCEFTDKKGDLIRYKKAGPEAKAVIAAY 503

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
             +  G+     + +    + G+++T  GRR+ +   N  KS         A    IQ +
Sbjct: 504 HTQIQGVKTLATRAQKIAEERGWIQTAHGRRLRFP--NGYKSY-------KASGILIQAT 554

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD  +   + +  +L        M+L  HD     V E       ++      K  + +
Sbjct: 555 AADENKENWLRIEDALGSD---GSMILNTHDSYSMSVDENWKPIWERV------KKAVER 605

Query: 956 INLRVPLKVNI-KVSNNWQE 974
             LRVPL +    V  NW E
Sbjct: 606 QTLRVPLLLEFDGVGKNWAE 625


>gi|58257974|gb|AAW69382.1| DNA polymerase I [Hydrogenothermus marinus]
          Length = 172

 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 26/190 (13%)

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP        +R+ F       +I ADYSQIELRI A   K   +   F+  LD
Sbjct: 1   DPNLQNIPTS------LRKLFRPAKNYSMIVADYSQIELRIAAEYTKDQVMINAFKQGLD 54

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAAD 830
           +HR  A+ I G + E ++ + R+ AK INF +IYGISP  L      +  + I   EA  
Sbjct: 55  LHRFTASLITGKDYEDITKEERQMAKAINFGLIYGISPRSLMEYASSSYGVEISLKEAQI 114

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVE--TIFGRRIHYDEINSPKSSIRNINERAAI 888
           + +++F  + G  ++ E+TK  ++ +  +E  ++ GRR+   +               A+
Sbjct: 115 FHEKFFEHYKGFKKWHEETKEKLKNHREIEVVSLLGRRMKVMKFTD------------AV 162

Query: 889 NAPIQGSAAD 898
           N PIQG+ AD
Sbjct: 163 NYPIQGTGAD 172


>gi|289750685|ref|ZP_06510063.1| 5-3 exonuclease [Mycobacterium tuberculosis T92]
 gi|289691272|gb|EFD58701.1| 5-3 exonuclease [Mycobacterium tuberculosis T92]
          Length = 306

 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 80/277 (28%), Positives = 128/277 (46%), Gaps = 35/277 (12%)

Query: 17  YRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP-AVTFRNE 75
           +R+    P      D   VNA  GF + +  ++   R     +  AV  D      FR +
Sbjct: 3   FRSIIGVPSSITAPDDRTVNAERGFIDSMAVVITQQR----PTRLAVCLDLDWRPQFRVD 58

Query: 76  IYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + P YKA+R             ++P+ L PQ+ ++     AFGI      GFEADD++ T
Sbjct: 59  LIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY---DTVKEEKIDIEHVIKKWGIPP 176
                 ++   V ++S D+DL+Q+V+    P   LY      K        V +++G+P 
Sbjct: 119 LATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPA 176

Query: 177 EKMVC----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKR 229
            +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   K    K  
Sbjct: 177 HRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGL 236

Query: 230 RENILEYAETARLSRKLVMLRTDVPITI--PLEHLIL 264
           R  +L  +   + + ++V + TD P+T+  P + L L
Sbjct: 237 RTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 273


>gi|153847210|ref|ZP_01993922.1| exodeoxyribonuclease IX [Vibrio parahaemolyticus AQ3810]
 gi|149744744|gb|EDM56212.1| exodeoxyribonuclease IX [Vibrio parahaemolyticus AQ3810]
          Length = 218

 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 2/152 (1%)

Query: 55  ESIASHFAVIFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           E+  +H   +FD+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  
Sbjct: 66  EAKPTHIIAVFDHHKQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLS 125

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
           +G EADD++AT        G  VTI+STDK   QL+SPT  + D  +   +D   + K++
Sbjct: 126 EGDEADDLVATLATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEF 185

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
           G+ P ++     LTG S   +PG+PGIG K A
Sbjct: 186 GVKPSQLADYWGLTGISSSQVPGVPGIGPKAA 217


>gi|317049318|ref|YP_004116966.1| 5'-3' exonuclease [Pantoea sp. At-9b]
 gi|316950935|gb|ADU70410.1| 5'-3' exonuclease, SAM-fold domain protein [Pantoea sp. At-9b]
          Length = 251

 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 45  LWKLLQNSRKESIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102
           L +LL ++R     +H   +FD       +R+ + PDYKA RP +P+ L  ++P ++ A 
Sbjct: 33  LHQLLGHTR----PTHVVAVFDSATRQPGWRHALLPDYKAGRPPMPDDLQQEMPAIQQAF 88

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK 162
           QA G+        EADD+ AT        G   TI+STDK   QL++P   + D  ++  
Sbjct: 89  QAAGVSCWIADQDEADDLAATLAIKMADAGHQATIVSTDKGYCQLLAPQIRIRDYFQKRW 148

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
           +D+  + +++G+ P ++     L G S   IPG+ GIG K+A  L+ ++G+LE I     
Sbjct: 149 LDVPFIEQEFGVTPAQLADYWGLCGISSSKIPGVAGIGPKSARELIGQFGSLEAIYQQWD 208

Query: 223 RIKQKKRRENILEYAETARLSRKLVMLRTDV 253
           ++  K + + +      A + R++  L+ D+
Sbjct: 209 QVPAKWQGK-LQSQRAMAEICRQVSTLKRDL 238


>gi|66821457|ref|XP_644204.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
 gi|60472150|gb|EAL70103.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
          Length = 519

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 132/263 (50%), Gaps = 29/263 (11%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-GVNIEKVS 794
           +FIS     L++ DY+QIELRI+AH +K   L + FE+  D+  M+A+ +  GV+   V 
Sbjct: 223 SFISREGYSLVALDYNQIELRIMAHYSKDKHLIEYFESGKDVINMMASRLIDGVDPNNVK 282

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            ++R   K I + I+YGI    L   L +   EA ++I  +  +F  +  +I+       
Sbjct: 283 KEIRDKVKRIVYGILYGIQKNSLHKLLGVSLDEAQEHINNFNLKFEEVSSFIKINSQI-- 340

Query: 855 QNGYVETIFGRRIHYDE-----INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           +NG + TI  R   + +      ++  SS  + +   AIN+ +QGS+ADI + AMI++  
Sbjct: 341 KNGKILTIGNRIRRFQDHSSIIPSTSSSSSLSSSPIQAINSIMQGSSADIIKMAMINIMN 400

Query: 910 SL----------------EDHKLATKMLLQIHDELVFEVPEEEITTAS----QIIVHSME 949
            L                 D     + +LQ+HDELVFE+P++ ++  S     +I + ME
Sbjct: 401 ELLLPLSKLREFIGVNSKGDVVGTPRFVLQVHDELVFEIPDQLLSDESIRLDLLIKYQME 460

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
           +      NL VPL  ++ +   +
Sbjct: 461 RIG-NHFNLLVPLVTSLSIGKKY 482



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 14/153 (9%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-----KFNLSSPKQLGDILFTKL 637
           MEI G+  D   L   S +I K +  +  ++Y+   +     K NL+SP+Q+ D     L
Sbjct: 1   MEIEGVCCDTSKLDNCSEKILKRIKEINCSVYNEDSKLIREPKINLNSPQQVLDWFGKNL 60

Query: 638 KFPSGAKTKTGQWKTTA-QDLEQINCGDNPI---IKNILEWRQLSKIKSTYADSL--PNH 691
           +     K  +   +T A + ++ +NC +  +   I ++   R+L+K+ S+Y   +   N 
Sbjct: 61  E---NYKITSSNKETLAIERVKFLNCNNKKVVDFIDSVSNVRKLTKLNSSYIKIILKSNR 117

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            N    +    ++   T TGRL+S +PN Q++P
Sbjct: 118 TNNLKFQFSCLWNQTGTTTGRLSSTKPNFQSLP 150


>gi|317487299|ref|ZP_07946094.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
 gi|316921489|gb|EFV42780.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
          Length = 626

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 151/372 (40%), Gaps = 39/372 (10%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E FN +S +Q+ D L  K  +     T TGQ K     L  +     P  K ++++ +L 
Sbjct: 276 ETFNPASRQQIADRLMEKHGWKPSEFTDTGQPKVDEDVLASLPF---PECKPLVDYLELL 332

Query: 679 KIKSTYADSLPNHIN--KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           KI    A+     +       R+H        +TGR     PNL  IP +   G++ R  
Sbjct: 333 KIIGMLAEGKNGWLKLVGPDGRIHGRVITNGAVTGRCTHNSPNLAQIPARGQYGKQCRAL 392

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F +PP    + AD S +ELR+LAH          ++       ++  +I   N      +
Sbjct: 393 FAAPPPLVQVGADASGLELRMLAHY------LAAYDGGAYAKVLLEGDIHTANQHAAGLE 446

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK-------RYFHRFPGIHEYIEKT 849
            R +AKT  ++ +YG    +L + +  P + +A   K       R+F   P I   I+  
Sbjct: 447 TRDNAKTFIYAFLYGAGDEKLGS-IVAPLASSAVQTKRGRALKDRFFRSLPAIKRLIDDV 505

Query: 850 KNFVRQNG---YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           +  +   G   Y+  I GR +H          IR  +  +A+N  +Q + A + + A + 
Sbjct: 506 QGVLTGPGKRPYLIGIDGRHLH----------IR--SSHSALNTLLQSAGAVLMKLATVI 553

Query: 907 VHKSLEDHKLATK----MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
            H   +   L        +L +HDE  F    E+     ++ V S+E A      +R P 
Sbjct: 554 FHMEAQRRGLRLGEDYAQVLHVHDEAQFNTTPEKADALGKLFVESIELAGR-HFGMRCPT 612

Query: 963 KVNIKVSNNWQE 974
               KV  NW E
Sbjct: 613 TGEYKVGANWAE 624


>gi|302386608|ref|YP_003822430.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Clostridium saccharolyticum WM1]
 gi|302197236|gb|ADL04807.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Clostridium saccharolyticum WM1]
          Length = 358

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 150/353 (42%), Gaps = 84/353 (23%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR------------KH--------DGLPVNAIAGFCN 43
           E    +VDGSS +   +YA  +L R            KH        DG   NA+ G   
Sbjct: 3   ERKFVIVDGSSMLSTCYYA--VLPREIMFAKSEEEKQKHYDKILHAKDGTYTNAVFGMLK 60

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           M+  L++  + + IA     +FD    TFR E+YPDYK  R   PE L  Q  L+    +
Sbjct: 61  MIVSLMKKQQPDYIA----FVFDKTRDTFRRELYPDYKGTRGITPEPLKSQFVLMEEILK 116

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-------------- 149
             G   +  + +EADD   +      KE  ++ +++ D D +QLV+              
Sbjct: 117 DVGFQVLLSEQYEADDYAGSLVMKFRKE-ISMILLTKDHDYLQLVNDEYNVRAWMVQSRQ 175

Query: 150 -PTTCLYDT------VKEEKIDI---------EHVIKKWGIPPEKMVCLQALTGDSIDNI 193
                LY        VK+E++++         + V+++ G+ PE++  L+ + GD  DNI
Sbjct: 176 EKAEELYQKYYSFYGVKKEEVNLPEKVFEYTSDTVLREEGVRPEQIADLKGIQGDPSDNI 235

Query: 194 PGIPGIGYKTAALLLQEYGNLENIL--INASRIKQK------------------------ 227
           PG+ G+       LL+EYG +E I   I+ +   +K                        
Sbjct: 236 PGVKGVS-SAVPPLLREYGTVEEIYRSIHEAEADKKILKELQDFWKNQLGITRSPYKALT 294

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           K  E  L   + A LS+ L  ++TD+PI + LE    E     ++  +LK L+
Sbjct: 295 KTSEEELCGEKAAMLSKTLATMKTDIPIDMALEAFSAEAYQEEKVKKWLKILD 347


>gi|226357424|ref|YP_002787163.1| 5-3 exonuclease [Deinococcus deserti VCD115]
 gi|226319414|gb|ACO47409.1| putative 5-3 exonuclease [Deinococcus deserti VCD115]
          Length = 244

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 122/255 (47%), Gaps = 19/255 (7%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFD 66
            L+D S+ I RA+Y          G   +A+    C ++W L    + E +    A + D
Sbjct: 4   LLIDSSNAICRAYYGRA-------GGQAHAVPQVLCEVVWSLQHRFQAEHV---IAALDD 53

Query: 67  YPAVTFRNEIYPDYKANR-PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                FR  +Y  YK +R PK  ++         L   A  IPA+     EADD++ T  
Sbjct: 54  --TRNFRQSLYESYKGHRTPKPADLTHLLTQAAELMGAAGAIPALA-PNHEADDVMGT-- 108

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            +A +      I+++D+DL   V+ T  +Y+      I +  V  ++G+ PE++   ++L
Sbjct: 109 -LARRAPGRAVIVTSDRDLFSAVTETVQVYEPRSRTVITVADVQARFGVSPERIPLFKSL 167

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ G+G K A++L  + G ++ I    S   ++ ++  +       RL  +
Sbjct: 168 CGDSSDNIPGVRGLGEKAASVLAAQCGTVDEIFERVSTFDRRYQKALLAADPMEIRLFHQ 227

Query: 246 LVMLRTDVPIT-IPL 259
           L  +RTD P+  +PL
Sbjct: 228 LATVRTDAPVARVPL 242


>gi|315181204|gb|ADT88118.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 676

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 189/423 (44%), Gaps = 43/423 (10%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP--KQL 629
           ++ P +   + +E  G ++ +D   Q+     + L     N+Y     +  +++P  +  
Sbjct: 268 IEMPWVVTNAAIEWNGFKVCRDKCSQILEACERKL-----NLYSQELAQLGMTNPNSQHQ 322

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-L 688
              LF  L        K G+  +  +++   N   +P +  + ++   + I S Y D  L
Sbjct: 323 KQALFASLGLLH--HFKDGEDYSFQREMLSKNYALHPAVAFLAKY---THIDSVYKDVIL 377

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
              I     RVH+     +  TGR A++ PN+  +P        +R   ++     +   
Sbjct: 378 QPGIVGSDGRVHSEQKQLTAATGRQATVAPNILGLPAV------LRPLVVAQDGYAIGEV 431

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE------------KVSPQ 796
           D +QIE+ I A +   + L +++ N  D++  +A E F   +E            +  P+
Sbjct: 432 DLAQIEVAIAAGVYGDSNLVKMY-NQGDLYTAMAQEFFCDELESEYRICDSSTFKEKYPE 490

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            R   K     +IYGI+ F +A +L I  ++A + + ++   FP + + IEK   +    
Sbjct: 491 KRAIMKQCTLGLIYGITSFGIAKKLNISVNKATELMDKFLSMFPELQKAIEKMPQYGALR 550

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           G+V T  G    Y ++++ +    +  +   +N P+QG+AA + + A   +H+  + +  
Sbjct: 551 GHVSTATGLH-RYRQLDAKRG---HTEKNWMVNMPVQGTAAALFKAAGNRLHQLYKSYD- 605

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNIKVSNNWQ 973
             K+++ +HD  VFEVP+E ++  S++    M +      P++ +R    +NI   + W 
Sbjct: 606 -AKLIVAMHDAFVFEVPKEHLSEVSELTAQLMTQVVQEMYPQLKIRA--DINISQPDCWT 662

Query: 974 EEN 976
           ++ 
Sbjct: 663 KDG 665


>gi|288918044|ref|ZP_06412402.1| 5'-3' exonuclease [Frankia sp. EUN1f]
 gi|288350562|gb|EFC84781.1| 5'-3' exonuclease [Frankia sp. EUN1f]
          Length = 341

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 109/246 (44%), Gaps = 43/246 (17%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L D  S  +RAF+  P   R  DG+ VNA+ G  ++L + + + R   +   F   
Sbjct: 11  ERLLLADTPSLYFRAFHGVPRSVRAPDGMVVNAVRGLLDVLARQIVDLRPRRLVCCFDA- 69

Query: 65  FDY-PAVTFRNEIYPDYKANR--------------------------------PKIPEML 91
            D+ PA  FR  +   YKA+R                                 ++P+ L
Sbjct: 70  -DWRPA--FRVALIASYKAHRVADPVPAPVAVSPVADAGGLGLGGPQAGGVVVEEVPDEL 126

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT--YIAEKEGFAVTIISTDKDLMQLVS 149
             QLP++     AFGI   E  GFEADD+IAT    +   + G  V I++ D+DL QLV 
Sbjct: 127 EAQLPVIDAVLAAFGIARAEAAGFEADDVIATLATRHSVGRVG-PVDILTGDRDLFQLVC 185

Query: 150 PTTCL---YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
               +   Y   K   +D   V  ++GIP         L GD  D +PG+ GIG KTAA 
Sbjct: 186 DDVGVAVRYAVEKFALVDEASVSARYGIPGRAYADFAVLRGDPSDGLPGVAGIGAKTAAA 245

Query: 207 LLQEYG 212
           LL  +G
Sbjct: 246 LLVRFG 251


>gi|152965853|ref|YP_001361637.1| 5'-3' exonuclease [Kineococcus radiotolerans SRS30216]
 gi|151360370|gb|ABS03373.1| 5'-3' exonuclease [Kineococcus radiotolerans SRS30216]
          Length = 320

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 109/233 (46%), Gaps = 21/233 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RAF+  P      DG PVNA+ GF + +  L+       + + +    D
Sbjct: 12  LMLLDSASLCFRAFHGVPESLTAPDGTPVNAVRGFLDAIAHLVATHAPTRLVACWD---D 68

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                FR    P YKA+R       + P  L  Q+ +V     A G+  +   G+EADD+
Sbjct: 69  DWRPAFRVAALPSYKAHRVSPDGGEETPAALPAQVDVVVEVLAALGVARVGAPGYEADDV 128

Query: 121 IATYTY-----IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV------KEEKIDIEHVI 169
           +AT T       A + G  V +++ D+DL QLV     + D        + + +D   + 
Sbjct: 129 MATLTARASTGSASRPGVPVDVVTGDRDLFQLVDDAAGVRDVYCGKGVRRADLVDQAWLA 188

Query: 170 KKWGIPPEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
            ++G+        +  L GD  D +PG+ GIG KTAA L+  YG+L  +L  A
Sbjct: 189 ARYGVASGAAYADVAVLRGDPSDGLPGVAGIGEKTAAALVGRYGDLAGVLAAA 241


>gi|322499407|emb|CBZ34480.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1171

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 131/275 (47%), Gaps = 45/275 (16%)

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIE 791
            +R  + +PP   L S D++Q+ELR+LAH++    L +    ++D+  +V A +  + +I+
Sbjct: 900  LRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASVLRLPSID 959

Query: 792  KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA---------------------- 829
             V PQ R+  K I + ++YG+ P  +  +++    E A                      
Sbjct: 960  HVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEFATSEQQQHRGEAASSAPAPMAAR 1019

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            D ++R+   +P I  Y+ +T+    ++  VET+ GR+    E ++      N   + AI 
Sbjct: 1020 DLLRRFHRVYPRIENYLRETRQEALRSFAVETLSGRKSLIAEKDA------NRRRQRAIA 1073

Query: 890  APIQGSAADITRRAMISVHKS-------LEDHKLATKMLLQIHDELVFEVPE---EEITT 939
              +QG AAD+   AM +VH+        L    LA  +++ IHDELV+ VP    EE+  
Sbjct: 1074 QAVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA--LVMSIHDELVYAVPRVAIEEVVR 1131

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              Q I+    +     + L VPL V+ +V +   E
Sbjct: 1132 GVQRILEDQARV----LRLAVPLPVSARVGHCLGE 1162


>gi|294498772|ref|YP_003562472.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294348709|gb|ADE69038.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 295

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 123/260 (47%), Gaps = 17/260 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK---ESIASHFAV 63
           L ++DG + + R ++AT    R    L  N+   F N L   +Q       +   SH  V
Sbjct: 5   LLVIDGFNLLSRCYFATSY-GRDEAALTRNSKGQFTNALRVTIQKMHALIHQYEPSHIFV 63

Query: 64  IFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +D     T R + Y  YK  R ++PE L+ Q   ++      GI  + +  +EADD+I 
Sbjct: 64  AWDVKREDTKRKDTYALYKQTRAELPEPLIQQYETLKQFFDTVGIYQMSLSSYEADDLIG 123

Query: 123 TYTYIAEKE----GFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIKKWGIP 175
                  KE    G+   I S D+DL+QL+            V +     +H  +++ I 
Sbjct: 124 ALASKWSKEKQSPGY---IYSNDRDLLQLLDQHISQIIAKKQVGDLVYGFKHFQEEYNIH 180

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENI 233
           P + V ++AL GD  DNIPG+PG+G K A  L+Q+YG++  I     ++     + ++ +
Sbjct: 181 PRQWVDVKALLGDKSDNIPGVPGVGEKAALPLIQQYGSIHEIYAQIEQLDPAFNRYKKKL 240

Query: 234 LEYAETARLSRKLVMLRTDV 253
           +E  E   LSR+L  +  D+
Sbjct: 241 VEGKELGMLSRELAEIIIDI 260


>gi|94499044|ref|ZP_01305582.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94428676|gb|EAT13648.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 288

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D S+  +R ++A   +    DG  V+A+    ++ W L     +  +A      FD  
Sbjct: 4   IIDISAVFFRYYFAPGPVVINDDGYDVSAL--LSSLRWLL---KPEFLLAESTICCFDES 58

Query: 69  AVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
             T FR+E+ P+YKANRP   + ++ QL  ++L  +  G   +     EADD+IAT   I
Sbjct: 59  LGTGFRHELDPEYKANRPLPTDDIIYQLSALKLVCETLGFAVLASDELEADDLIATT--I 116

Query: 128 AEKEGFAVTIISTDKDLMQL-VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           A        I S DKDL QL +     + D    +    + + ++ G+ P+++    A+ 
Sbjct: 117 ACYPSDPCVIHSRDKDLRQLLIEGRVTMQDVATNQIWTQKRLEEEVGLAPQQIPLYLAMV 176

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILI-----------NASRIKQKKRRENILE 235
           GD  DNIPG+PGIG KTA  LLQ Y +   I+             ++RIKQ     NILE
Sbjct: 177 GDVSDNIPGVPGIGDKTALRLLQAYEDWPQIMDAVHSDDILPVRGSARIKQ-----NILE 231

Query: 236 YAETARLSRKLVMLRT 251
           Y +   L+ KL  L+ 
Sbjct: 232 YQDRIVLNLKLTQLKV 247


>gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock]
          Length = 595

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 135/312 (43%), Gaps = 27/312 (8%)

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            +T+TG+ +     LE++    N +     E ++L K + T+     +  +    R HTF
Sbjct: 289 GRTETGKRQVDKTLLEKLVAEGNELATIAQEAKKLGKWRKTWVQKFLDTRDAE-DRCHTF 347

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
            +     T R++      Q +P        +RR F++     + S DY   ELR+LA ++
Sbjct: 348 VNPLQARTSRMSITGIPAQTLPASD---STVRRCFLAEEGDVMASIDYQTQELRVLAALS 404

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               + + F+   D+H+M A           +   R+  K  NF  +YG     LA Q +
Sbjct: 405 NDQTMIEAFKTGADLHQMTA---------DAAQVTRKVGKMANFLTVYGGGAKTLAEQAK 455

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +    A   +  +   +PG+    +K      + GY+ T  GRR+       P  S R+ 
Sbjct: 456 VDFPTAKRTLDAFARTYPGVARLSKKLGTEAGRKGYIVTPVGRRL-------PVDSSRSY 508

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
           +   A+N  +Q S+ D+T RA+I +HK+         + L IHDE+V  +P  E   A+ 
Sbjct: 509 S---ALNYMVQSSSRDVTCRALIRLHKA----GYTPYLRLPIHDEIVASLPASEAERAAA 561

Query: 943 IIVHSMEKACLP 954
            I   M +   P
Sbjct: 562 HIGQLMAEQMGP 573


>gi|197122061|ref|YP_002134012.1| 5'-3' exonuclease [Anaeromyxobacter sp. K]
 gi|196171910|gb|ACG72883.1| 5'-3' exonuclease [Anaeromyxobacter sp. K]
          Length = 319

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDG+  ++RA ++     R  DG  V A  G    L  LL  + +    +H AV FD
Sbjct: 3   LHLVDGTYELFRAHFSGRPGHRAPDGREVKATLGMAASLLALLHEAGEA--VTHVAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  +FRN+++  YK+     PE+L         A    G+    +   EADD +AT   
Sbjct: 61  RPIRSFRNDLWAGYKSEEGVEPELLAQLEAAEEAARAL-GLVVWSMDALEADDALATAAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQ-LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               E   V I++ DKDL Q L        D ++  + D   ++ + GI PE +    AL
Sbjct: 120 RFRDEVEQVRILTPDKDLGQCLRGRRVVQVDRMRGRETDEAALLARRGIQPESVPDWLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR----IKQKKRRENILEYA-ETA 240
            GD+ D IPG+PG G +TA+ LL  YG+LE++  + +R    ++   +    LE   E A
Sbjct: 180 VGDTADGIPGLPGFGERTASALLAVYGHLEDVPADPARWPAGVRGAAKLARALEEGREAA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            L R+L  L TD P+   LE L     +  RL ++  +L   +L+
Sbjct: 240 LLYRRLATLVTDAPLAEGLEALRWPGLSRERLGAWAASLGAERLV 284


>gi|220916831|ref|YP_002492135.1| 5'-3' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954685|gb|ACL65069.1| 5'-3' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 319

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDG+  ++RA ++     R  DG  V A  G    L  LL  + +    +H AV FD
Sbjct: 3   LHLVDGTYELFRAHFSGRPGHRAPDGREVKATLGMAASLLALLHEAGEA--VTHVAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  +FRN+++  YK+     PE+L         A    G+    +   EADD +AT   
Sbjct: 61  RPIRSFRNDLWAGYKSEEGVEPELLAQLEAAEEAARAL-GLVVWSMDALEADDALATAAA 119

Query: 127 IAEKEGFAVTIISTDKDLMQ-LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               E   V I++ DKDL Q L        D ++  + D   ++ + GI PE +    AL
Sbjct: 120 RFRDEVEQVRILTPDKDLGQCLRGRRVVQVDRMRGRETDEAALLARRGIQPESVPDWLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR----IKQKKRRENILEYA-ETA 240
            GD+ D IPG+PG G +TA+ LL  YG+LE++  + +R    ++   +    LE   E A
Sbjct: 180 VGDTADGIPGLPGFGERTASALLAVYGHLEDVPADPARWPAGVRGAAKLARALEEGREAA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            L R+L  L TD P+   LE L     +  RL ++  +L   +L+
Sbjct: 240 LLYRRLATLVTDAPLAEGLEALRWPGLSRERLGAWAASLGAERLV 284


>gi|225349766|gb|ACN87808.1| PolA [Lactobacillus casei]
          Length = 243

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 118/213 (55%), Gaps = 11/213 (5%)

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531
           +R G+ +     D++L SY+++   +S+D+  IA+   +    R E +  K  K  +P  
Sbjct: 34  NRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP-- 91

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++       S+ +  L   L   L  ++   ++  ++  +  V+++MEI GI ++
Sbjct: 92  --EDDKLFGQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEPTLSRVLAEMEIQGITLN 149

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG + 
Sbjct: 150 AKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YS 208

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           T+   L ++    +PI+++IL++R  +K+ STY
Sbjct: 209 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTY 240


>gi|146087835|ref|XP_001465919.1| DNA polymerase theta (polymerase domain only) [Leishmania infantum
            JPCM5]
 gi|134070020|emb|CAM68350.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
            infantum JPCM5]
          Length = 1169

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 131/275 (47%), Gaps = 45/275 (16%)

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIE 791
            +R  + +PP   L S D++Q+ELR+LAH++    L +    ++D+  +V A +  + +I+
Sbjct: 898  LRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASVLRLPSID 957

Query: 792  KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA---------------------- 829
             V PQ R+  K I + ++YG+ P  +  +++    E A                      
Sbjct: 958  HVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEFATSEQQQHRGEAASSAPAPMAAR 1017

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            D ++R+   +P I  Y+ +T+    ++  VET+ GR+    E ++      N   + AI 
Sbjct: 1018 DLLRRFHRVYPRIENYLRETRQEALRSFAVETLSGRKSLIAEKDA------NRRRQRAIA 1071

Query: 890  APIQGSAADITRRAMISVHKS-------LEDHKLATKMLLQIHDELVFEVPE---EEITT 939
              +QG AAD+   AM +VH+        L    LA  +++ IHDELV+ VP    EE+  
Sbjct: 1072 QAVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA--LVMSIHDELVYAVPRVAIEEVVR 1129

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              Q I+    +     + L VPL V+ +V +   E
Sbjct: 1130 GVQRILEDQARV----LRLAVPLPVSARVGHCLGE 1160


>gi|258653118|ref|YP_003202274.1| 5'-3' exonuclease [Nakamurella multipartita DSM 44233]
 gi|258556343|gb|ACV79285.1| 5'-3' exonuclease [Nakamurella multipartita DSM 44233]
          Length = 333

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 52/297 (17%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +   +RAFYA P  +   DG P+NA+ G  +++ +++ ++R   + +   + + 
Sbjct: 2   LQLLDLAGIYFRAFYAVPTSTTAPDGRPMNAVRGSLDIIARVMADARPTRVIACLDLDW- 60

Query: 67  YPAVTFRNEIYPDYKANR------------------------------PK-----IPEML 91
            PA  +R E+   YK +R                              P      +P+ L
Sbjct: 61  RPA--WRVELIESYKTHRVLEPGSAQAASLAAAADALAAATPHSGTAGPSADIEVVPDEL 118

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV--- 148
            PQ+P++     A GI      GFEADD+I T  +    +   V +++ D+DL Q+    
Sbjct: 119 SPQVPILLDTLAAIGITVAGAPGFEADDVIGTLAHAESVD--PVEVVTGDRDLFQVARDD 176

Query: 149 -SPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
             P T  Y      K  +     V  ++GIP +      AL GD  D +PG+ G+G KTA
Sbjct: 177 APPVTVRYIGAGMSKAKVYSAADVAARYGIPADSYADFAALRGDPSDGLPGVAGVGEKTA 236

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETAR----LSRKLVMLRTDVPITI 257
           A L+  +G++E  LI A   +       +      AR    ++ ++V +  D P+++
Sbjct: 237 ATLIGRFGSIEG-LIEALDARSTGLAPGVRSKLAAARDYLLVAPRVVRVAQDAPVSV 292


>gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 842

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 129/317 (40%), Gaps = 71/317 (22%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+H   +L +T TGRL   +PNLQN P   +    IR+AF + P   LI  DYSQ+ELRI
Sbjct: 554 RIHPSLALDTT-TGRLCCRKPNLQNPPSAHNDLYSIRKAFSARPGNTLIVGDYSQLELRI 612

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS----------------------- 794
           LAH+++   + +      DIH   A ++F    E V+                       
Sbjct: 613 LAHMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAVANGSVGRLHSRIDRRATVQVVIDD 672

Query: 795 --------------PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
                            R+ AK +NFSI YG +   LA ++ +P ++  D   R+ +   
Sbjct: 673 AEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDMFTRWNNSKK 732

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  +  +    VR                E   P+   R+ ++         G A+  +
Sbjct: 733 GVERWKAEILREVRACS------------GEFRHPRVGGRHRHD---------GHASRRS 771

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL---PKIN 957
           RR         E      K+++Q+HDE++ E P E  T A  I+   ME       P   
Sbjct: 772 RR---------ETTAHGVKIVMQVHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYR 822

Query: 958 LRVPLKVNIKVSNNWQE 974
           + + L V+I    NW +
Sbjct: 823 MLINLDVDIATGTNWSD 839



 Score = 41.2 bits (95), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502
           ++ +L   + +FEN    KI HN   D  VL+ +GI++RG E D   ++ + DS  SS
Sbjct: 145 SRHVLDLFRSYFENPAKRKIFHNFAADAHVLYGHGITVRGLEADTRYLARLFDSSLSS 202


>gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik]
 gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik]
          Length = 600

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 170/385 (44%), Gaps = 41/385 (10%)

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSP---KQLGDIL 633
           ++ S ++  G Q+D     + + E+S   L  E+++++ +   ++ L +P   +Q  D++
Sbjct: 227 EICSYIDRKGFQLD----VEYAQELSDRWL-YEKSVWEAILFTEYGLDNPNSNEQCADVI 281

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP----IIKNILEWRQLSKIKSTYADSLP 689
             +  +    +T TG+ +  A   +++     P    +   I E ++L K ++T+     
Sbjct: 282 -EEAGWKIKGRTDTGKRQVNADLYDEMIKKGTPEQAALAAMIQEAQKLGKWRNTWVQKFL 340

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
             +     R HTF +     T R++      Q +P        +RR F++ P   + S D
Sbjct: 341 E-VKDSDDRCHTFVNPLQARTSRMSITGIPAQTLPAGD---WTVRRCFLAEPGHVMSSID 396

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           Y   ELR+LA ++    + + F+   D+H+M A           +   R+  K  NF  +
Sbjct: 397 YQTQELRVLAALSGDKTMIEAFKTGADLHQMTA---------DAAQVPRKIGKMANFLTV 447

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG     LA Q  I    A   ++ +   +PG+  Y +K      + GY+    GRR+  
Sbjct: 448 YGGGAKTLAEQANIDFPTAKRVLEAFAKTYPGVARYSKKLAAEAGRQGYIVNGMGRRL-- 505

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
                P  S R  +   A+N  IQ S+ D+T RA+I +H++         + L IHDE+V
Sbjct: 506 -----PVDSSRTYS---ALNYMIQSSSRDVTCRALIRLHEA----GFTPYLRLPIHDEIV 553

Query: 930 FEVPEEEITTASQIIVHSMEKACLP 954
             +P E+    ++ I   M +   P
Sbjct: 554 ASLPAEKAEWGAKKIGQLMAEEMGP 578


>gi|295704093|ref|YP_003597168.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294801752|gb|ADF38818.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 295

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 122/260 (46%), Gaps = 17/260 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK---ESIASHFAV 63
           L ++DG + + R ++AT    R    L  N+   F N L   +Q       +   SH  V
Sbjct: 5   LLVIDGFNLLSRCYFATSY-GRDEAALTRNSKGQFTNALRVTIQKMHALIHQYEPSHIFV 63

Query: 64  IFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +D     T R + Y  YK  R ++PE L+ Q   ++      GI  + +  +EADD+I 
Sbjct: 64  AWDVKREDTKRKDTYALYKQTRAELPEPLIQQYETLKQFFDTVGIYQMSLSSYEADDLIG 123

Query: 123 TYTYIAEKE----GFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIKKWGIP 175
                  KE    G+   I S D+DL+QL+            V +     +H  +++ I 
Sbjct: 124 ALVSKWSKEKQSPGY---IYSNDRDLLQLLDQHISQIIAKKQVGDLVYGFKHFQEEYNIH 180

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENI 233
           P + V ++AL GD  DNIPG+PG+G K A  L+Q+YG++  I     ++     + ++ +
Sbjct: 181 PRQWVDVKALLGDKSDNIPGVPGVGEKAALPLIQQYGSIHEIYAQIEQLDPAFNRYKKKL 240

Query: 234 LEYAETARLSRKLVMLRTDV 253
            E  E   LSR+L  +  D+
Sbjct: 241 AEGKELGMLSRELAEIIIDI 260


>gi|167516798|ref|XP_001742740.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779364|gb|EDQ92978.1| predicted protein [Monosiga brevicollis MX1]
          Length = 632

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 80/138 (57%), Gaps = 2/138 (1%)

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           P +R   K + ++++YG+   RLA QL++   E    +  +  RFPG+ +  ++   ++ 
Sbjct: 421 PGLRERGKRVTYAVVYGVGAERLAAQLQLSVPETGQLVAEFLDRFPGVAQLRDRVDAYLH 480

Query: 855 QNGYVETIFGRRIHYDE--INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
           Q+GYVET+  RR +          S+ +  + RAA N  +QGSAADI + AM+++   L+
Sbjct: 481 QHGYVETLTMRRRYLSPPGTGGESSTTQARDSRAAFNFVMQGSAADICKAAMVTLQAHLD 540

Query: 913 DHKLATKMLLQIHDELVF 930
            H++   ++LQ+HD++V 
Sbjct: 541 KHEVEGGIVLQLHDQIVI 558



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 526 SSIP--IDKISDSQVQEHAIENS--NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           S++P  +D++    + + A   S  +++  LW  L+ +L   + L ++ERL+ P+  V+ 
Sbjct: 236 SAVPPKVDQVCQLYLPDRAPSASWPSLLNMLWRRLKAELEQRQQLTLFERLEVPLTPVLV 295

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-- 639
           +M++ G+ +    L    A +   L SL +    L+G+ FNL S +Q+ +ILFT L+   
Sbjct: 296 RMQVLGVGVALPQLVATQAALQHCLQSLTQEAAILAGQSFNLDSAQQVANILFTHLQLGR 355

Query: 640 --PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
             P    T +G+  T  + L ++    +P+   IL +RQL +  S Y
Sbjct: 356 NVPMLPMTASGKPSTGEETLRKLQS-KHPLPGLILRYRQLKRCLSGY 401


>gi|327197776|ref|YP_004301474.1| gp141 [Brochothrix phage A9]
 gi|299810376|gb|ADJ53175.1| gp141 [Brochothrix phage A9]
          Length = 334

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 134/277 (48%), Gaps = 22/277 (7%)

Query: 719 NLQNIP------IKTDLGQKIRRAFISPPTKK-----LISADYSQIELRILAHIAKITPL 767
           NLQN+P       + D    I+  F   P K      L+  DYS  E R+   +A    +
Sbjct: 2   NLQNLPRSISDPTRFDYAFPIKDYF--GPNKARNHDTLVFTDYSAQEARLAGVLAGDEQM 59

Query: 768 YQVF-ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
              F + S D+H   A+ +F V +E+V+  +R  AK + F ++YG  P   A +  +P  
Sbjct: 60  INAFLDPSRDVHTETASLVFKVPVEEVTKDLRTRAKAVTFGLMYGEDPNSFAGKNNMPIE 119

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF-GRRIHYDEINSPKSSIRNINER 885
           E+    + Y+   P I E I+  ++   ++GY++    G R + +++ S     +N   R
Sbjct: 120 ESEQLFEDYYAGKPKIKELIDIAQSSATRDGYIDVPGSGFRRNLEDVWSADFKTKNGALR 179

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N  +QG +A +T++A+I++++    + +   +++ +HD +V     E + T + I+ 
Sbjct: 180 QALNTMVQGGSAYLTQKALITINQYFRAYDIDAYIMVTVHDSIVCSTKRELVPTVATIMQ 239

Query: 946 HSMEKACLPKIN-------LRVPLKVNIKVSNNWQEE 975
            +ME   +  +N       +R P+  ++ V   + +E
Sbjct: 240 VAMENVEVDYLNIEHNGNPIRFPMVADVGVGVTYNKE 276


>gi|319949285|ref|ZP_08023365.1| 5'-3' exonuclease [Dietzia cinnamea P4]
 gi|319437075|gb|EFV92115.1| 5'-3' exonuclease [Dietzia cinnamea P4]
          Length = 309

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 127/263 (48%), Gaps = 24/263 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L ++D +   +RAF++ P      DG P NA+ GFC+M+  L++      +    A 
Sbjct: 3   QGSLMVLDSAGLWFRAFHSVPEKITGPDGAPANAVRGFCDMVAVLVEEYSPTGLV---AA 59

Query: 64  IFDYPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           +       +R E+ P YKA+R         P  L PQ+  +R    A G+     +  EA
Sbjct: 60  LDRQWRPDWRVELLPSYKAHRVGDDGEEDAPASLGPQVGAIRDVLGAAGLTQAWAEDAEA 119

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----VIKKWG 173
           DD++A  +   ++E   V +++ D+DL QL S TT +       K  + +    V +++ 
Sbjct: 120 DDVLAALS-ARDRE---VLVVTGDRDLFQLASATTTVVYVGAGMKKRLAYTPQVVAERFD 175

Query: 174 IPP----EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA---SRIKQ 226
           +P             L GD+ D +PG+ GIG K+AA LL+EYG+L+ I+  A        
Sbjct: 176 LPAGDDARAYADYAVLVGDASDGLPGVAGIGAKSAATLLREYGDLDGIIAAAGDPGSAMS 235

Query: 227 KKRRENILEYAETARLSRKLVML 249
            ++R+ I E A+    +R +V L
Sbjct: 236 ARQRKAITEGADYLTAARGVVRL 258


>gi|161506484|ref|YP_001573596.1| hypothetical protein SARI_04690 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867831|gb|ABX24454.1| hypothetical protein SARI_04690 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 180

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +P+ L  ++P +R A +  G+      G EADD+ AT      + G   TI+STDK   Q
Sbjct: 1   MPDNLHNEMPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQ 60

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L+SPT  + D  ++  +D   + K++G+ P ++     L G S   +PG+ GIG K+A  
Sbjct: 61  LLSPTLRIRDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQ 120

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           LL ++ NLE I  + + + +K R++ +  + E A L R +  L+TD+ I   L+ L L
Sbjct: 121 LLTQFQNLEGIYAHLNEVPEKWRKK-LETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 177


>gi|83273619|ref|XP_729478.1| 5'-3' exonuclease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487389|gb|EAA21043.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium yoelii yoelii]
          Length = 450

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 132/293 (45%), Gaps = 49/293 (16%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFC---NMLWKLLQNSRKESIASHFAV 63
             ++DGSS +++ ++  P L  ++D + ++ I GF    N ++KL          S+ A+
Sbjct: 130 FLIIDGSSLLFKNYFGMPFLKNEND-VNLSTIYGFTQSLNKIYKLFS-------PSYIAI 181

Query: 64  IFDYPAVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD       + EIY  YK  R K PE L  QL LV       GI  I  +  E+D+ IA
Sbjct: 182 VFDSKTSNKEKREIYAQYKTIRKKNPEELYEQLKLVSEFCDVIGIKTIISENVESDNYIA 241

Query: 123 T-----YTYIA----------------------EKEGFAVTIISTDKDLMQLVSPTTCLY 155
           +     Y  I+                      ++  F + IIS+DKDL+QL+      +
Sbjct: 242 SLVDQIYNTISTNNELESRHYENGLVSLNNDQIKENHFRIVIISSDKDLLQLLEYNDNAH 301

Query: 156 DTV---------KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           + +         K   I+    I++  I P +      L GD  D I GIP IG KT+  
Sbjct: 302 NNIDISVCQPNRKYRIINAHTFIQEHNIYPNQYSDYLILAGDKTDGISGIPNIGDKTSKY 361

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL 259
           LL+EY +++NIL N   +  K +    +   E   + RKL+ L+ +   +I L
Sbjct: 362 LLKEYYSIDNILKNIQNLPPKLQTI-FINNIENINMFRKLIKLKCETNQSINL 413


>gi|116621877|ref|YP_824033.1| 5'-3' exonuclease [Candidatus Solibacter usitatus Ellin6076]
 gi|116225039|gb|ABJ83748.1| 5'-3' exonuclease [Candidatus Solibacter usitatus Ellin6076]
          Length = 281

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 123/255 (48%), Gaps = 19/255 (7%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L+DG+  ++R +YA P  +R   GL V A  G    +  ++Q       A+H AV  D  
Sbjct: 5   LIDGTYELFRHYYALPS-ARDAHGLEVAAARGVLRSVLGMIQAG-----ATHVAVATDQV 58

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             +FRN ++P YK      P+ LL Q PL+     A G+    +  FEADD +A    +A
Sbjct: 59  IESFRNGLWPGYKTGDGIEPD-LLAQFPLLEEVLAAAGVVVWPMVEFEADDALAAGASVA 117

Query: 129 EKEGFA--VTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQAL 185
            ++     V I + DKDL Q V  T  +    +     D   ++ K+G+ PE +    AL
Sbjct: 118 ARDPRVDQVIICTPDKDLGQSVRGTRVVQLNRRTRVTFDEAAIVAKFGVSPESIPDYLAL 177

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-------LINASRIKQKKRRENILEYAE 238
            GD+ D  PG+PG G K++A +L ++ +LE+I        +NAS          + E  E
Sbjct: 178 VGDAADGYPGLPGWGAKSSAAVLAKFRHLESIPLDWREWRVNAS--NAGALAHTLAEQRE 235

Query: 239 TARLSRKLVMLRTDV 253
            A L R L  L TD+
Sbjct: 236 QAMLFRTLATLCTDI 250


>gi|326332395|ref|ZP_08198673.1| 5'-3' exonuclease, C- SAM fold protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325949803|gb|EGD41865.1| 5'-3' exonuclease, C- SAM fold protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 330

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 18/248 (7%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L +VD  S ++R  +A   T ++ R   G P  A+ G   ML ++L +   ++ A   AV
Sbjct: 9   LLVVDAPSLLHRNHHARAHTRMVDRA--GRPAWALHG---MLRQILDS--IDAFAPD-AV 60

Query: 64  IF--DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +F  D    + R + YPDYKA R +   ML+ QL        A G+  +   G EADD+ 
Sbjct: 61  LFGLDDRTASVRRDAYPDYKAGRAEKDPMLVEQLGRAGAMLDALGLATLTPPGLEADDVN 120

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK-----EEKIDIEHVIKKWGIPP 176
           A+    A + G+   +I++D+D   L+S  T +   +         ++   +   +G+P 
Sbjct: 121 ASAAAWAVRNGWNCVVITSDRDAFALISEHTQVLRLINGGINGSPLLNPARLYSMYGVPA 180

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + +   AL GD+ DN+PG+ GIG KTAA LL ++G ++ +  + S    +K  E +  +
Sbjct: 181 TRYLEYAALRGDASDNLPGVSGIGEKTAAALLDQFGPMDGVWADISDNDGQKVTEVLDAW 240

Query: 237 AETARLSR 244
           A    + R
Sbjct: 241 AADTGVRR 248


>gi|322815448|gb|EFZ24101.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 148/323 (45%), Gaps = 48/323 (14%)

Query: 689 PNHINKRTQ---RVHTFYSLASTMTGRLASLEPNLQ----NIPIK-------------TD 728
           P+H+  + +    VH  +S+    T RL    P LQ    N PI              ++
Sbjct: 560 PHHVEAQYRLFFSVHPKWSVHHATTSRLFCSRPCLQTVAKNPPISRTAPSSSPPVTIFSN 619

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
               +R  +  PP   L+S D++QIELR++AH++    L Q   +  D+   +A  +  +
Sbjct: 620 PKWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRDGSDVLAEMALRVMQL 679

Query: 789 -NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSE-----AADYIKRYF 836
             +  V+P +R+  K + + ++YG+ P  L  +LR       P +E     A  +++ + 
Sbjct: 680 PRLTDVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKEITPFAEQPPLSARQFLRSFN 739

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P +  +++ T+          T+ G R   D    P     N  ++ A+   IQG A
Sbjct: 740 QCYPAVQGFLKSTRLRAFHEKRCATLNGLR---DLSGEPDG---NRRKQVAVALAIQGGA 793

Query: 897 ADITRRAMISVHKSLEDHKLA-------TKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A I   AM+ VH+  + H+L          ++L +HDELV+ VP+  ++  +  I   +E
Sbjct: 794 AVILHHAMVEVHE--KRHELVPFLPAAAAALVLSVHDELVYAVPDGAVSFVAPKIKQILE 851

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
           +     ++L VPL V++K   ++
Sbjct: 852 QQAA-ALSLSVPLPVSMKAGKSF 873


>gi|295098758|emb|CBK87847.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Eubacterium cylindroides T2-87]
          Length = 170

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 8/148 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L L+DG+S ++RA+YAT    R    +G+P NA+ GF  ML K +   + +SI     V 
Sbjct: 4   LLLLDGNSMLFRAYYATLYTHRMSTSNGIPTNAVFGFIMMLNKAIDIIKPDSIL----VA 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    TFR++ +  YK  R  + E L+ Q P+VR    A GI   EI+G+EADDII + 
Sbjct: 60  WDAGKPTFRHKQFAAYKGTRKPLDEDLIVQFPIVREFLDATGIKRFEIEGYEADDIIGSM 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTT 152
                K     TI+++D+DL+QL+  TT
Sbjct: 120 AKTNSKG--MTTILTSDRDLLQLIDDTT 145


>gi|307106798|gb|EFN55043.1| hypothetical protein CHLNCDRAFT_134898 [Chlorella variabilis]
          Length = 158

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 81/149 (54%), Gaps = 11/149 (7%)

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EAA   + +    PG+  ++EK     RQ GYVET+ GRR     IN     +R   ER 
Sbjct: 7   EAAKLKQEFLESMPGVAAFLEKVVEDCRQTGYVETLAGRRCPLPNINLQSWRLRGEAERK 66

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKL---ATKMLLQIHDELVFEVPEEEITTASQI 943
           A+N P+QGSAAD+ + AMI++ +SL+  +       ++L IHDELV EV        + I
Sbjct: 67  AVNTPMQGSAADVMKAAMIALGESLQIGQAGEGGAAIVLMIHDELVIEV--------AAI 118

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +   ME   + K++L VPL V + +  +W
Sbjct: 119 VRECMEVVPVRKLHLSVPLAVKMSMGRSW 147


>gi|260776519|ref|ZP_05885414.1| probable exodeoxyribonuclease IX [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607742|gb|EEX34007.1| probable exodeoxyribonuclease IX [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 184

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 2/184 (1%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +PE LL  L  ++ A    GI ++  +G EADD++AT           VTIISTDK   Q
Sbjct: 1   MPEPLLNGLDAIQQAWWELGIDSLLSEGDEADDLVATLAMKVASHKEKVTIISTDKGYCQ 60

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L+SPT  + D  +   +D   + K++G+ P ++     L G S   +PG+PG+G K A  
Sbjct: 61  LLSPTLQIRDYFQHRWLDAPFIDKEFGVKPSQLADYWGLAGVSSSQVPGVPGVGPKAAKE 120

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           +L ++ ++E    +   +   K R+ + E+ ++AR  +K+  L+TD+ +   L+ +    
Sbjct: 121 ILTQFEDIEQAYTSDELV--AKYRKKLDEHIDSARRCKKVSALKTDIELGFNLQDIRFTG 178

Query: 267 CNGP 270
            N P
Sbjct: 179 ANTP 182


>gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured gamma proteobacterium HF0070_03O15]
          Length = 454

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 166/370 (44%), Gaps = 47/370 (12%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG-DNPIIKNILEWRQLSK 679
           FN+ S KQL      KL+   G        K +       NC  D+P I+ ++ W++  K
Sbjct: 114 FNIKSSKQL----LEKLELVLGYTPVNNDGKPSVAKDALKNCAADSPTIQTLMTWKRREK 169

Query: 680 IK---STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            +    +  D + N        V   Y      TGR++S++PN Q IP  ++     R+ 
Sbjct: 170 RRQMIESIQDKMSND-----GFVRASYMQLGADTGRMSSIKPNNQQIPRDSEF----RQC 220

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
             +P   K++ AD+SQ+ELR+ A +AK   +   F+   D+H    AE  G +       
Sbjct: 221 VQAPQGWKIVDADFSQMELRLAAALAKDKNMTAAFQRGEDLHDYT-AEQMGCD------- 272

Query: 797 MRRHAKTINFSIIY-----GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            R+ AK+ NF ++Y     G+  +  ++ + +   EA      +   + GI ++ ++  N
Sbjct: 273 -RQIAKSANFGLLYGAGAEGLRKYAGSSGVIMTNDEAVKIRDNWLTTYSGIRDW-QREMN 330

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIR-----NINERAA-INAPIQGSAADITRRAMI 905
           ++ ++   +        + E   P S++R     ++N      N PIQG+ A I + A+ 
Sbjct: 331 YLSRSTEGD-------EWPETRVPVSNMRRFLKGDLNRTTVRCNTPIQGAGAAILKCALG 383

Query: 906 SV-HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           ++  K  E  +   ++   +HDEL+  V E+     ++I+  +ME A    ++  VP   
Sbjct: 384 NLWDKVKETGEDKVRIAAAVHDELILLVKEDLADDWAEILKTTMENAEAKWLD-DVPALA 442

Query: 965 NIKVSNNWQE 974
            + + + W E
Sbjct: 443 EVSIGDRWSE 452


>gi|146086133|ref|XP_001465462.1| mitochondrial structure specific endonuclease I (SSE-1) [Leishmania
           infantum JPCM5]
 gi|134069560|emb|CAM67883.1| putative mitochondrial structure specific endonuclease I (SSE-1)
           [Leishmania infantum JPCM5]
 gi|322498941|emb|CBZ34014.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 297

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 107/204 (52%), Gaps = 19/204 (9%)

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLV-RLATQAFG---------IPAIEI 112
           V FD+     R +IY DYKANR  + + + P+  L+ R+A + F          +P  + 
Sbjct: 82  VCFDH-GDGGRRQIYADYKANR--LEKTVTPEFRLIERVAKKVFADEPRESLLVVPDCDA 138

Query: 113 Q----GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV--SPTTCLYDTVKEEKIDIE 166
                  EADD+IAT  +  ++      ++S D DL QLV  +  +  YD   +  +   
Sbjct: 139 GLTNLNAEADDMIATLAFFNQQSRRPTVVMSHDYDLYQLVDEAKKSYHYDIRTKHLVSER 198

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            VI++ G+PP+ +   ++L GDS DNIPG+ GIG   A  LL++YGNL+ IL    + + 
Sbjct: 199 GVIERVGVPPKLVRDFKSLAGDSSDNIPGVNGIGKVRARNLLKKYGNLDGILFKGIKKET 258

Query: 227 KKRRENILEYAETARLSRKLVMLR 250
               E + E A+ A +SR+LV  R
Sbjct: 259 GHLGELLNEGAKMALISRQLVDFR 282


>gi|239623599|ref|ZP_04666630.1| 5'-3' exonuclease [Clostridiales bacterium 1_7_47_FAA]
 gi|239521630|gb|EEQ61496.1| 5'-3' exonuclease [Clostridiales bacterium 1_7_47FAA]
          Length = 357

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 144/352 (40%), Gaps = 81/352 (23%)

Query: 4   ENHLFLVDGSSFIYRAFYA----------TPLLSRKH--------DGLPVNAIAGFCNML 45
           EN   +VDGSS +   +YA          T    +KH        DG   N I G    +
Sbjct: 3   ENKFVIVDGSSLLSTCYYAVLPREIMFAKTDEEKQKHYDKILHAADGTYTNGIFGVLKAV 62

Query: 46  WKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAF 105
             LL+  + +    H A +FD    TFR E+YPDYK  R + P+ L  Q  L+    +  
Sbjct: 63  VSLLKKQQPD----HVAFVFDKTRDTFRRELYPDYKGTRSETPKPLKQQFVLLEQILEDA 118

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---------------P 150
           G+  +    +EADD   +   +  ++   + +++ D D +QLV                 
Sbjct: 119 GVRVLYSSRYEADDYAGSLV-MKFRDRIPMVVMTKDHDYLQLVDDGHNVRAWMVQSRQEK 177

Query: 151 TTCLYDTV---------------KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
              LYD                 K  +   EHV+ + G+ P ++  L+ + GD+ DNIPG
Sbjct: 178 ADELYDKYYAPYGMDKKSVNLPEKTFEFTAEHVLAEEGVWPHQITDLKGIQGDTSDNIPG 237

Query: 196 IPGIGYKTAALLLQEYGNLENILI-------NASRIKQ--------------------KK 228
           + G+    A +LL EYG +E I         + + +K+                    K 
Sbjct: 238 VKGVA-SAAPILLGEYGTIEEIYAAIHEAEKDKASLKELQDFWKSGLGISRSPYKALTKT 296

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
             E+ L     A LS++L  ++TD+ I   L+   +   +  +L ++ + L+
Sbjct: 297 GEEDELCGEAAALLSKRLATIKTDIAIEESLDDFHVSGYDEDKLKAWCRKLD 348


>gi|115441359|ref|NP_001044959.1| Os01g0874800 [Oryza sativa Japonica Group]
 gi|56784844|dbj|BAD82084.1| putative DNA polymerase I 3'-5' exo domain [Oryza sativa Japonica
           Group]
 gi|113534490|dbj|BAF06873.1| Os01g0874800 [Oryza sativa Japonica Group]
 gi|215740431|dbj|BAG97087.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 358

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 13/214 (6%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R  + P YKA+RP+ P        +  L  +   +P + + G+EADD++AT T    ++
Sbjct: 132 YRRRLLPSYKAHRPRGPGTGADSRVIDVL--RECNVPVVRVDGYEADDVVATLTEQVLQK 189

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTG 187
           GF V I S DKD  QL+S    L   + E        + H + ++   P   + L+   G
Sbjct: 190 GFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTADLSLRCFIG 249

Query: 188 DSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAETAR 241
           D  D IPGI    PG G KTA  LL+++G+LEN+L  A+   + +   ++ ++++A+  R
Sbjct: 250 DEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYAQDALVKHADYLR 309

Query: 242 LSRKLVMLRTDVPITIPLEHLILED-CNGPRLIS 274
            + +++ L+ DV + +    L   D CN   ++S
Sbjct: 310 KNYEVLSLKRDVKVQLDDRWLSTRDSCNDSSVLS 343


>gi|284054557|ref|ZP_06384767.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 197

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 98/199 (49%), Gaps = 15/199 (7%)

Query: 17  YRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTF 72
           +RA+YA         R   G+P +   GF   L +++   + E +A    + FD    TF
Sbjct: 3   FRAYYAFGKSRNGGLRTSTGIPTSVCFGFIKSLLEVIDTYKPELVA----IAFDRAEPTF 58

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132
           R+E   +YKA+R + P   +  +  ++   + F IP   + G+EADD++ T        G
Sbjct: 59  RHEADANYKADRAETPADFIEDINNLQELLEGFRIPIFSVAGYEADDVLGTLANRGSAAG 118

Query: 133 FAVTIISTDKDLMQLVSPT---TCLY----DTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           + V I+S D+DL QL+      T L+         ++     V +K  I PE++V  +AL
Sbjct: 119 YQVKILSGDQDLFQLIDEQKQITVLHLSHGKGSSPQEFAAAQVYEKLSIKPEQVVDYKAL 178

Query: 186 TGDSIDNIPGIPGIGYKTA 204
            GD  D IPG+ GIG KTA
Sbjct: 179 CGDKSDCIPGVRGIGEKTA 197


>gi|19386844|dbj|BAB86222.1| putative DNA polymerase I [Oryza sativa Japonica Group]
 gi|20804753|dbj|BAB92438.1| putative DNA polymerase I 3'-5' exo domain [Oryza sativa Japonica
           Group]
 gi|215686883|dbj|BAG89733.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222619621|gb|EEE55753.1| hypothetical protein OsJ_04262 [Oryza sativa Japonica Group]
          Length = 356

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 13/214 (6%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R  + P YKA+RP+ P        +  L  +   +P + + G+EADD++AT T    ++
Sbjct: 132 YRRRLLPSYKAHRPRGPGTGADSRVIDVL--RECNVPVVRVDGYEADDVVATLTEQVLQK 189

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTG 187
           GF V I S DKD  QL+S    L   + E        + H + ++   P   + L+   G
Sbjct: 190 GFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTADLSLRCFIG 249

Query: 188 DSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAETAR 241
           D  D IPGI    PG G KTA  LL+++G+LEN+L  A+   + +   ++ ++++A+  R
Sbjct: 250 DEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYAQDALVKHADYLR 309

Query: 242 LSRKLVMLRTDVPITIPLEHLILED-CNGPRLIS 274
            + +++ L+ DV + +    L   D CN   ++S
Sbjct: 310 KNYEVLSLKRDVKVQLDDRWLSTRDSCNDSSVLS 343


>gi|68073511|ref|XP_678670.1| 5'-3' exonuclease, N-terminal resolvase-like domain, [Plasmodium
           berghei strain ANKA]
 gi|56499210|emb|CAI04895.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium berghei]
          Length = 342

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 131/293 (44%), Gaps = 49/293 (16%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFC---NMLWKLLQNSRKESIASHFAV 63
             ++DGSS +++ ++  P L  ++D + ++ I GF    N ++KL          S+ A+
Sbjct: 22  FLIIDGSSLLFKNYFGMPFLKNEND-INLSTIYGFTQSLNKIYKLFS-------PSYIAI 73

Query: 64  IFDYPAVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD       + EIY  YK  R K PE L  QL LV       GI  I  +  E+D+ IA
Sbjct: 74  VFDSKTSNKEKREIYAQYKTLRKKNPEELYDQLKLVSEFCDIIGIKTIISENVESDNYIA 133

Query: 123 T-----YTYIA----------------------EKEGFAVTIISTDKDLMQLVSPTTCLY 155
           +     Y  I                       ++  F + I+S+DKDL+QL+      +
Sbjct: 134 SLVDQIYNTIYTNNELAPNHYETGLISLNNDEIKENNFRIVIVSSDKDLLQLLEYNDNAH 193

Query: 156 DTV---------KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           + +         K   ++    I++  I P +      L GD  D I GIP IG KT+  
Sbjct: 194 NNIDISVCQPNRKYRIVNAHTFIQEHNIYPNQYSDYLILAGDKTDGISGIPNIGDKTSKY 253

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL 259
           LL+EY +++NIL N   +  K +   I    E   + RKL+ L+ +   +I L
Sbjct: 254 LLKEYYSIDNILKNIHNLPPKLQTIFINN-IENINMFRKLIKLKCETNQSINL 305


>gi|118483131|gb|ABK93472.1| unknown [Populus trichocarpa]
          Length = 375

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 21/231 (9%)

Query: 73  RNEIYPDYKANRPKIP-EMLLPQ-LPLVR------LATQAFGIPAIEIQGFEADDIIATY 124
           R ++ P YKA+R K   +   PQ  P  R      + T+   +P ++I+G EADD++AT 
Sbjct: 133 RRQLLPSYKAHRRKFSRKSSAPQKYPAERSHVVMDVLTKC-NVPVVKIEGHEADDVVATL 191

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
                + G  V I S DKD  QL+S    +   + E        ++H I ++   P   +
Sbjct: 192 AGQVLQNGHKVVIASPDKDFKQLISEDVQIVLPIAELNRWSFYTLKHYISQYNCDPCSDL 251

Query: 181 CLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENIL 234
             + + GD +D +PGI    PG G KTA  LL+++G+L+N+L  A+   + +K  ++ + 
Sbjct: 252 SFRCIMGDEVDGVPGIQNVAPGFGRKTALKLLKKHGSLQNLLDAAAVRTVGKKYAQDALT 311

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILED-CNGPRLIS-FLKALEFTK 283
           ++++  R + +++ LR DV + +  E L+  D CN   ++S F K LE +K
Sbjct: 312 KHSDYLRRNYEILALRRDVDVQLKEEWLVERDRCNDSIILSNFFKLLEQSK 362


>gi|261334514|emb|CBH17508.1| DNA polymerase theta, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 846

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 148/311 (47%), Gaps = 45/311 (14%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP-----------IKTDLG-------QKIRRAFISP 740
           VH  +++  T TGRL    PNLQ +P           + +D G         +R  +   
Sbjct: 535 VHPHWAVHHTSTGRLYCSRPNLQTVPKTAQKCTYVSPLTSDYGLLFTNPEWTMRHLYGPA 594

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRR 799
           P   L+S D++Q+ELR+LAH++    L Q   +  D+   +   + G+ + E+V P +R 
Sbjct: 595 PGCVLLSFDFNQMELRVLAHLSGDELLIQHLSSEYDVLSAMTRHLTGLSDDEQVPPHLRE 654

Query: 800 HAKTINFSIIYGISPFRLATQLRI--------PRSE---AADYIKRYFH-RFPGIHEYIE 847
             K + + + YG+    +  +++I        P S+    AD + R FH R+P   +++ 
Sbjct: 655 TVKVVVYGLFYGMGLATMKERVKILMDSAHSVPSSQRKITADTLLRAFHQRYPAAGKFLT 714

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           + +          T+ G     ++++S K    N   + +I   +QGS++ + + AM+ V
Sbjct: 715 RARIRAFHEARCVTLTG----INDLSSEKDG--NRRRQHSIARILQGSSSTLFQSAMVKV 768

Query: 908 HKSLED-----HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM-EKACLPKINLRVP 961
           H+   D           ++L IHDEL++ V E  +   ++ I   M E+A +   +LRVP
Sbjct: 769 HERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVAREIKGIMVEQAQV--FSLRVP 826

Query: 962 LKVNIKVSNNW 972
           L+V++KV   +
Sbjct: 827 LRVSVKVGKTF 837


>gi|218189462|gb|EEC71889.1| hypothetical protein OsI_04629 [Oryza sativa Indica Group]
          Length = 356

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 13/214 (6%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R  + P YKA+RP+ P        +  L  +   +P + + G+EADD++AT T    ++
Sbjct: 132 YRRRLLPSYKAHRPRGPGTGADSRVIDVL--RECNVPVVRVDGYEADDVVATLTEQVLQK 189

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTG 187
           GF V I S DKD  QL+S    L   + E        + H + ++   P   + L+   G
Sbjct: 190 GFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTADLSLRCFIG 249

Query: 188 DSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAETAR 241
           D  D +PGI    PG G KTA  LL+++G+LEN+L  A+   + +   ++ ++++A+  R
Sbjct: 250 DEADGVPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYAQDALVKHADYLR 309

Query: 242 LSRKLVMLRTDVPITIPLEHLILED-CNGPRLIS 274
            + +++ L+ DV + +    L   D CN   ++S
Sbjct: 310 KNYEVLSLKRDVKVQLDDRWLSTRDSCNDSSVLS 343


>gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis]
          Length = 158

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 12/157 (7%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           + +R  F +P    +I+ADYSQIELR++A   K   + + F+ + D+H++ A+ I G N 
Sbjct: 2   KDLRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKNY 61

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHE 844
           E+++ + R  AK INF +IYGISP  L         + I   EA  + K +F  +  I +
Sbjct: 62  EEITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINITLPEANKFHKNFFEFYKDIKK 121

Query: 845 YIEKTKNFVRQNGYV--ETIFGRRI----HYDEINSP 875
           + E+TKN +  +GY+  +T+ GRRI      D +N P
Sbjct: 122 WHEETKNHLNHHGYIIAKTLLGRRILAKKFTDAVNYP 158


>gi|294948800|ref|XP_002785901.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
 gi|239900009|gb|EER17697.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
          Length = 1712

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 18/223 (8%)

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----------SLDIHRMV 781
            +R AF++P  + L+S DY Q+E R+LAH      L  +F             + DI   +
Sbjct: 1452 LRDAFVAPKGRLLLSVDYCQLEARLLAHFCGDQRLITLFNQPDGDYNSTGSPTYDIFVHI 1511

Query: 782  AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            A+      + +VS   R   K + + +IYG+    L+ ++ +  +E    + ++ + FP 
Sbjct: 1512 ASTWLSKALNEVSDMERNGIKQLVYGVIYGMGARSLSREMGVTLAEGEALMSKFDNEFPR 1571

Query: 842  IHEYIEKT-KNFVRQNGYVETIFGRRIHYDEINSPKSSI-RNINERAAINAPIQGSAADI 899
            + E+         R+   V +I GR  H   +    ++  R   +R A+N   Q SAADI
Sbjct: 1572 VREWTRSVIHGATREGASVPSILGRPRHLAGLGGGGTAQERARAQRQAVNTACQASAADI 1631

Query: 900  TRRAMISVHKSL-----EDHKLATKMLLQIHDELVFEVPEEEI 937
             + A + V + L     E+ +   ++LLQIHDEL+ EV E+ I
Sbjct: 1632 MKAATLEVARRLAAMRDENGRPPAEILLQIHDELLLEVDEDRI 1674


>gi|71755431|ref|XP_828630.1| DNA polymerase theta [Trypanosoma brucei TREU927]
 gi|70834016|gb|EAN79518.1| DNA polymerase theta, putative [Trypanosoma brucei]
          Length = 896

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 148/311 (47%), Gaps = 45/311 (14%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP-----------IKTDLG-------QKIRRAFISP 740
           VH  +++  T TGRL    PNLQ +P           + +D G         +R  +   
Sbjct: 585 VHPHWAVHHTSTGRLYCSRPNLQTVPKTAQKCTYVSPLTSDYGLLFTNPEWTMRHLYGPA 644

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRR 799
           P   L+S D++Q+ELR+LAH++    L +   +  D+   +   I G+ + E+V P +R 
Sbjct: 645 PGCVLLSFDFNQMELRVLAHLSGDELLIKHLSSEYDVLSAMTRHITGLSDDEQVPPHLRE 704

Query: 800 HAKTINFSIIYGISPFRLATQLRI--------PRSE---AADYIKRYFH-RFPGIHEYIE 847
             K + + + YG+    +  +++I        P S+    AD + R FH R+P   +++ 
Sbjct: 705 TVKVVVYGLFYGMGLATMKERVKILMDSAHSVPSSQRKFTADTLLRAFHQRYPAAGKFLT 764

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           + +          T+ G     ++++S K    N   + +I   +QGS++ + + AM+ V
Sbjct: 765 RARIRAFHEARCVTLTG----INDLSSEKDG--NRRRQHSIARILQGSSSTLFQSAMVKV 818

Query: 908 HKSLED-----HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM-EKACLPKINLRVP 961
           H+   D           ++L IHDEL++ V E  +   ++ I   M E+A +   +LRVP
Sbjct: 819 HERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVARKIKGIMVEQAQV--FSLRVP 876

Query: 962 LKVNIKVSNNW 972
           L+V++KV   +
Sbjct: 877 LRVSVKVGKTF 887


>gi|322491670|emb|CBZ26943.1| putative mitochondrial structure specific endonuclease I (SSE-1)
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 297

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 107/204 (52%), Gaps = 19/204 (9%)

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLV-RLATQAFG---------IPAIEI 112
           V FD+     R +IY DYKANR  + + + P+  L+ R+A + F          +P  + 
Sbjct: 82  VCFDH-GDGGRRQIYADYKANR--LEKTVTPEFRLIERVAKKVFADEPRESLLVVPDCDA 138

Query: 113 Q----GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV--SPTTCLYDTVKEEKIDIE 166
                  EADD+IAT  +  ++      ++S D DL QLV  +  +  YD   +  +   
Sbjct: 139 GLANLNAEADDMIATLAFFNQQSRRPTVVMSHDYDLYQLVDEAKKSYHYDIRTKHLVSER 198

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            VI++ G+PP+ +   ++L GDS DNIPG+ GIG   A  LL++YG+L+ IL    + + 
Sbjct: 199 GVIERIGVPPKLVRDFKSLAGDSSDNIPGVNGIGKVRARNLLKKYGDLDGILFQGVKKET 258

Query: 227 KKRRENILEYAETARLSRKLVMLR 250
               E + E A+ A +SR+LV  R
Sbjct: 259 GHLGELLNEGAKMALISRQLVDFR 282


>gi|261884408|ref|ZP_06008447.1| DNA polymerase I [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 179

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 5/175 (2%)

Query: 11  DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV 70
           D   F +R +YA   L +   G P   + GF N ++ L Q+   + I   FA+  D    
Sbjct: 8   DTFGFFFRLYYAMIGL-KSQSGKPSGMVHGFANFIYNLKQDFPSDYIV--FAL--DSGGK 62

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           TFR++I P+YKANR   P+ L  QLP+     +  G+ ++ ++G+EADDIIA++   ++ 
Sbjct: 63  TFRSQIDPNYKANRVSPPQELKDQLPVCIDMIEKMGLCSLRVEGYEADDIIASFIKNSKD 122

Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           +   + I++ DKDL QL+     ++   K+E  + +   +K+G+ PE++    AL
Sbjct: 123 QDLEIRIVTHDKDLYQLIDDRVSIFSPAKKELYNRDGCYEKYGVYPEQIRDFLAL 177


>gi|70919502|ref|XP_733432.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56505224|emb|CAH83005.1| hypothetical protein PC300270.00.0 [Plasmodium chabaudi chabaudi]
          Length = 199

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 108/208 (51%), Gaps = 22/208 (10%)

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKK------------LISADYSQIELRILAHIAKI 764
           +PNLQNI  K      ++   I P + K            L++ DY Q+EL ++A+++  
Sbjct: 2   QPNLQNIHSKFRCTISLKNDDIKPISVKTKHVKNKSVNQNLLTFDYKQMELFVMAYLSFD 61

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
           + L ++  NS D+    A  +F  N   V+ ++RR  KT+ + I+YG S   LA  L + 
Sbjct: 62  SQLLKMLNNS-DVFVETAKVLFNTN--DVTKELRRMTKTVIYGILYGQSENGLAKNLLVS 118

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            + A   I  +F+ +P + ++++K K  V+    V T+ GR+   D       +I+N   
Sbjct: 119 ENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIGRKRLVDP------TIKN-KY 171

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLE 912
           R ++N PIQG AADI + A++S HK L 
Sbjct: 172 RISMNTPIQGCAADIMKFALLSCHKILS 199


>gi|213421486|ref|ZP_03354552.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 123

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 5/120 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120


>gi|56693107|ref|YP_164694.1| hypothetical protein LP65_gp059 [Lactobacillus phage LP65]
 gi|54633608|gb|AAV35879.1| orf59 [Lactobacillus phage LP65]
          Length = 988

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 129/294 (43%), Gaps = 15/294 (5%)

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP-NLQNIPIKTDLGQKIRRAFISP 740
            ++ D LP  +  +   V   ++   T T RL+S    N QN   +TD       ++   
Sbjct: 599 GSFIDKLP-EVRDKDDFVKPSFNPYVTETSRLSSSGAFNAQNQTRRTDNPNDFNYSYGVK 657

Query: 741 PTKK-------LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
              +       L++ DYS +E+  +A ++K   + Q   +  DIH+  A+  F V  ++V
Sbjct: 658 SMYRSRFKGGILLNMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASLGFHVPYDEV 717

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +  +R  AK ++F I Y +    LA  L +   EA           P + + +  ++ F 
Sbjct: 718 TKNLRTSAKKVSFGIPYSMGIKTLAKDLGVDEKEAQRIYDAILATMPQVKQAMADSQEFA 777

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
            +  Y ET+ G R     ++S    +R   +R A N  IQGS ++I    +ISVH+    
Sbjct: 778 ARYKYAETLNGFRRDLSNVDSILKDVRAKAKRQAFNTEIQGSGSNIVNLGLISVHEQFCK 837

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI------NLRVP 961
             L +K++  +HD ++ +V   E+     ++ +  E    P I        RVP
Sbjct: 838 RNLKSKIIATVHDSILLDVYPPELAEVYAVVKYCCEHVNFPAIINNDATGYRVP 891


>gi|301092543|ref|XP_002997126.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262111575|gb|EEY69627.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 280

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 7/256 (2%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVDG++ +Y  FY  PL + + +G+   A+ G    L +LL+   K     H +V+FD 
Sbjct: 25  LLVDGNNALYH-FY-DPLSNVEQNGVKTEAVDG----LLRLLRRMDKTHEPEHISVVFDS 78

Query: 68  PA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T R  + P YK +R  +P+ L PQ    +       +  IE  G EADDIIA+Y+ 
Sbjct: 79  KQRPTTRRVMQPVYKTDRAPMPQSLAPQFTYAQEVLSRANVNCIERPGMEADDIIASYSV 138

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
                G+ V +IS D D +QLV     +Y   K   I   +V  ++G+ P+ +    AL 
Sbjct: 139 QYTVAGYDVLLISNDNDFLQLVHGGVNIYQPSKRRYIRERNVRGRFGLHPKLLPDFHALC 198

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           G     +P +  +  + A  LL +YG L  +L     +      + + +   +   S ++
Sbjct: 199 GHHWKRLPRVDSLTDELAVQLLTQYGGLYPLLRQLDTLVDPVLCKTLKQCITSVESSYRI 258

Query: 247 VMLRTDVPITIPLEHL 262
           V L   V + + +E L
Sbjct: 259 VKLVDTVELPVAIEDL 274


>gi|156122486|gb|ABU50234.1| DNA polymerase [Cyanophage S-CBP3]
          Length = 582

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 130/288 (45%), Gaps = 36/288 (12%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           R  R+H   S+A T T R A  +PNL  +P + +     R+ F + P   ++ AD + IE
Sbjct: 321 RNDRIHHHCSVA-TNTHRCAHRKPNLAQVPAEAEF----RKLFRATPGMVMVGADLAGIE 375

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LAH      L Q ++       ++  +I   N +K+    RR  KT+ ++ +YG   
Sbjct: 376 LRMLAHY-----LAQ-WDGGRYGDVLLNGDIHQENADKIGIS-RRLVKTVTYAFLYGAGN 428

Query: 815 FRLATQLRIPRSEAADYIKR--------YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            ++   L   +S + D  K+        Y    PG+ + +E TK    + GY+  I GR 
Sbjct: 429 QKIG--LSYDQSLSPDKAKKKGQEIRQAYMDAIPGLRKLVEATKKAANR-GYIRAIDGRH 485

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           I    ++SP  S+         N  +Q SA  I +R +   H+++    +    L  IHD
Sbjct: 486 I---SVDSPHKSL---------NYLLQSSAGVIAKRWLALTHEAIIRADIKAHQLAFIHD 533

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL FE   E +      ++     A     NLR+P+  + K  N+W E
Sbjct: 534 ELQFETTPEHVEDLKFALLWGAASAG-EYYNLRIPIAADAKSGNDWSE 580


>gi|255521587|ref|ZP_05388824.1| 5-3 exonuclease family protein [Listeria monocytogenes FSL J1-175]
          Length = 177

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%)

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           GFEADD I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     
Sbjct: 1   GFEADDCIGTITVQASNT-IATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFF 59

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           ++ GI P + + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++
Sbjct: 60  EEMGISPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQ 119

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
            + I E      LS+KL  + T+VP+ I L  L
Sbjct: 120 TK-IQEDLAMLELSQKLARIHTEVPLEIDLPSL 151


>gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29]
          Length = 478

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 158/370 (42%), Gaps = 47/370 (12%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK- 679
           FNL+SP+QL     +KL    G K ++     +   L +   G +P+++  L W++  K 
Sbjct: 138 FNLNSPQQLK----SKLSAVLGVKLES----VSKNALSEF-AGHHPVVQMYLNWKKAEKR 188

Query: 680 ---IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
              I S      P+        V   Y      TGR+    PN Q IP      ++ R  
Sbjct: 189 RQMITSIQEKMRPDGF------VKASYMQLGAETGRMTCFNPNNQQIPKD----KQFRGC 238

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
             +P    ++ AD+ Q+ELR+ A +A+   + Q F++  D+H  V AE  G         
Sbjct: 239 VEAPKGWLIVDADFGQMELRLAAAVAQDKKMIQAFKDGEDLH-TVTAEAIGCT------- 290

Query: 797 MRRHAKTINFSIIY-----GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            R+ AK+ NF ++Y     G+  +   + + +   EA      +F  F GI ++ +K  +
Sbjct: 291 -RQIAKSANFGLLYGSGAKGLRNYAAGSNVSMTLEEAQKVRSDWFQEFEGIAKWHKKEND 349

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIR-----NINE-RAAINAPIQGSAADITRRAMI 905
             + N       G++     I  P++ +R     + N      N P+QG+ A I ++A+ 
Sbjct: 350 --KANNPNPRFKGKKCGIQFIEIPETGMRRDLPGDANRLTVRCNTPVQGAGAAILKQALG 407

Query: 906 SVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
            +   + +    T ++   +HDE++  V E+     +  +   ME+A    +   +P   
Sbjct: 408 KLWPLVREAGEETVRIAAAVHDEILLLVREDAAEEWAATLKQVMEEAEAKWLG-EIPALA 466

Query: 965 NIKVSNNWQE 974
            +     WQE
Sbjct: 467 EVSFGKTWQE 476


>gi|325973136|ref|YP_004250200.1| 5'-3' exonuclease, DNA polymerase I-like protein [Mycoplasma suis
           str. Illinois]
 gi|323651738|gb|ADX97820.1| 5'-3' exonuclease, DNA polymerase I-like protein [Mycoplasma suis
           str. Illinois]
          Length = 268

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 17/258 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIA--GFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++DGS+   + F+A     +       N  +   F N L+  ++   K        ++FD
Sbjct: 11  IIDGSAIARKCFHAVTSDKKDQKIYENNDFSYKKFLNCLFSGIKKIMKTKRYFRKIIVFD 70

Query: 67  Y-PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR-LATQAFGIP-AIEIQGFEADDIIAT 123
                 FR +I+P+YKANR K+ E     +   + L  +  G+   +   G+E DD I T
Sbjct: 71  RRGGDNFRKKIFPEYKANRKKVDESFYYWIEKSKSLLKRYLGLEIYVSENGYEGDDQIGT 130

Query: 124 YTYIAEK--EGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW-----GIP 175
              IA+K  E F  V I + D D +QLV     ++   K+  I I + ++ +     G+ 
Sbjct: 131 ---IAKKFSEKFCYVDIFTIDSDFLQLVDEFISVH-LFKKSFIKISYNLENFSKLTDGLL 186

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +    +AL+GDS DN PGIP IG KTA  L++++G+ +N L N   IK  + + +I E
Sbjct: 187 PHQFPLFKALSGDSSDNYPGIPNIGKKTAINLIKQFGSEDNFLKNYQNIKDWRIKTSISE 246

Query: 236 YAETARLSRKLVMLRTDV 253
             E  ++  ++  ++T++
Sbjct: 247 NIEKLKIYLEIAKIKTNL 264


>gi|269964624|ref|ZP_06178862.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830523|gb|EEZ84744.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 676

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 184/422 (43%), Gaps = 41/422 (9%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P +   + +E  G ++ +D  +Q+     + L    + +  L     N    KQ   
Sbjct: 268 IEMPWVVTNAAIEWNGFKVCRDKCRQILEACERKLSLYSQGLAQLGMTNPNSQHQKQ--- 324

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPN 690
           +LF  L        K G   +  +++   N   +P +  + ++   + I S Y D  L  
Sbjct: 325 VLFASLGLLH--HFKDGDDYSFQREMLSKNYALHPAVAFLAKY---THIDSVYKDVILQP 379

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS-AD 749
            I     RVH+     +  TGR A++ PN+  +P        + R  +      +I   D
Sbjct: 380 GIVGSDGRVHSEQKQLTAATGRQATVAPNILGLP-------AVLRPLVVAQDGYVIGEVD 432

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE------------KVSPQM 797
            +QIE+ I A +   + L +++ N  D++  +A E F   +E            +  P+ 
Sbjct: 433 LAQIEVAIAAGVYGDSNLVKMY-NQGDLYTAMAQEFFCEELEPEYSTCDSAVFKEKYPEK 491

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R   K     +IYGI+ F +A +L I  ++A + + ++   FP + + I+K   +    G
Sbjct: 492 RAIMKQCTLGLIYGITSFGIAKKLNISVNKATELMDKFLSMFPELQKAIDKMPQYGALRG 551

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           +V T  G    Y ++++ +    +  +   +N P+QG+AA + + A   +H+  + +   
Sbjct: 552 HVSTATGLH-RYRQLDAKRG---HTEKNWMVNMPVQGTAAALFKAAGNRLHQLYKSYN-- 605

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNIKVSNNWQE 974
             +++ +HD  VFE P+E +   S++    M +      P++ +R    +NI   + W +
Sbjct: 606 AILIVAMHDAFVFEAPKECLNEVSELTAQIMTQVVQEMYPQLKIRA--DINISQPDCWTK 663

Query: 975 EN 976
           + 
Sbjct: 664 DG 665


>gi|5616166|gb|AAD45654.1|AF124228_1 kinetoplast structure-specific endonuclease I [Crithidia
           fasciculata]
          Length = 297

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 22/196 (11%)

Query: 73  RNEIYPDYKANR---PKIPEMLLPQLPLVRLATQAFG---------IPAIEIQ----GFE 116
           R +IY DYKANR    + PE+L+    + ++A + F          +P  + +      E
Sbjct: 91  RRQIYADYKANRLSVKRTPELLM----MEKVAKKVFADEPAGTTLVVPDCDARLKTVNAE 146

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCL-YDTVKEEKIDIEHVIKKWGI 174
           ADD+IAT     ++      ++S D DL QLV     C  YD   +  +  + VI++ G+
Sbjct: 147 ADDMIATLALFNQQNKVPTVVMSHDFDLYQLVDDLHKCYNYDIRTKHLVSEKSVIERVGV 206

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P  +   +A+ GD+ DNIPG+ GIG   A  LL++YG+L+ IL    + +  +  E + 
Sbjct: 207 HPRLIRDFKAMAGDASDNIPGMKGIGKVRACQLLKKYGDLDGILARGPKNETGRLAELLE 266

Query: 235 EYAETARLSRKLVMLR 250
           E A++A +SR+LV  R
Sbjct: 267 EGAKSAHISRQLVDFR 282


>gi|324999158|ref|ZP_08120270.1| 5'-3' exonuclease [Pseudonocardia sp. P1]
          Length = 303

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 111/233 (47%), Gaps = 38/233 (16%)

Query: 17  YRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY-PAVTFRNE 75
           +RA++  P      DG PVNA+ GF +M+ +L+   R   + +   +  D+ PA  FR  
Sbjct: 3   FRAYFGVPESITAPDGTPVNAVRGFTDMISRLVTEQRPSRLVA--CLDLDWRPA--FRVA 58

Query: 76  IYPDYK--------------ANRPK-IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             P YK              A  P+ +P+ L PQ+P++     A GI      G EADD+
Sbjct: 59  ALPSYKAHRVVAARAADEVPAGVPEEVPDTLGPQVPVIMEVLAAAGICTAGADGHEADDV 118

Query: 121 IATYTYIAEKE-GFAVTIISTDKDLMQLVSP-------TTCLY---DTVKEEKIDIEHVI 169
           I T   +A++E    V  +S D+DLMQ+V            LY      K E +  + V 
Sbjct: 119 IGT---LADRETADPVLAVSGDRDLMQIVRDPGDGRPRVRLLYIGRGLNKAEDLGPDEVA 175

Query: 170 KKWGIPPEKMVCLQA----LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
            K+ +P ++     A    L GD  D +PG+PG+G KTAA L+  +G+   +L
Sbjct: 176 AKYDLPRDRAGAAYAEMAMLRGDPSDGLPGVPGVGAKTAATLVGRFGSWAELL 228


>gi|186488278|ref|NP_001117409.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|51536440|gb|AAU05458.1| At1g34380 [Arabidopsis thaliana]
 gi|52421279|gb|AAU45209.1| At1g34380 [Arabidopsis thaliana]
 gi|332193586|gb|AEE31707.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 347

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 14/221 (6%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLP--LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           R E+ P YKA+R         + P   V    +   +P + I+G EADD++AT    A +
Sbjct: 125 RRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPVVRIEGHEADDVVATLMEQAVQ 184

Query: 131 EGFAVTIISTDKDLMQLVSPTT----CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            G+   I S DKD  QL+S        L D  +     ++H   ++   P+  +  + + 
Sbjct: 185 RGYRAVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNCDPQSDLSFRCIM 244

Query: 187 GDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAETA 240
           GD +D +PGI    P  G KTA  L++++G+LE++L  A+   + +   +E + +YA+  
Sbjct: 245 GDEVDGVPGIQHMVPAFGRKTAMKLVRKHGSLESLLSAAAVRTVGRPYAQEALTKYADYL 304

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPR--LISFLKAL 279
           R + +++ L  DV + I  E L+  D +     L SF   L
Sbjct: 305 RRNYQVLALNRDVRVQIQNEWLMERDTSNDSEVLSSFFSTL 345


>gi|154337326|ref|XP_001564896.1| mitochondrial structure specific endonuclease I (SSE-1) [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134061934|emb|CAM38975.1| putative mitochondrial structure specific endonuclease I (SSE-1)
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 297

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 19/204 (9%)

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLV-RLATQAFG---------IPAIEI 112
           V FD+     R +IY  YKANR +      P+  L+ R+A + F          +P  + 
Sbjct: 82  VCFDH-GDGGRRQIYASYKANRSE--RATTPEFRLIERVAKKVFADEPRESLLVVPDCDA 138

Query: 113 Q----GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT--TCLYDTVKEEKIDIE 166
                  EADD+IAT  +  ++      ++S D DL QLV     +  YD   +  +   
Sbjct: 139 GLASLNAEADDMIATLAFFNQQSRRPTVVMSHDYDLYQLVDEARKSYHYDIRTKHLVSER 198

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V+++ G+PP+ +   ++L GDS DNIPG+ GIG   A  LL++YG+L+ IL    + + 
Sbjct: 199 SVMERVGVPPKLVRDFKSLAGDSSDNIPGVNGIGKMRACNLLKKYGDLDGILFKGVKSET 258

Query: 227 KKRRENILEYAETARLSRKLVMLR 250
               E + E A+ A LSR+L+  R
Sbjct: 259 GHLGELLSEGAKMALLSRQLIDFR 282


>gi|167945527|ref|ZP_02532601.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 110

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 4/112 (3%)

Query: 43  NMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102
           NML +L+ + + E    H AV+FD P  +FRN++YPDYKANRP +PE L  Q+  +    
Sbjct: 2   NMLRRLIDDYQPE----HMAVVFDAPGGSFRNQLYPDYKANRPPMPEELRQQIEPLHQIV 57

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           +A G+P + I G EADD+I T    A + G    I + DKD+ QLV+    L
Sbjct: 58  RAMGLPLLMIPGVEADDVIGTLAQQAAQLGMQSLISTGDKDMAQLVNAQVAL 109


>gi|9964623|ref|NP_064753.1| RP DNA pol [Roseobacter phage SIO1]
 gi|9944314|gb|AAG02598.1|AF189021_17 RP DNA pol [Roseobacter phage SIO1]
          Length = 580

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 134/580 (23%), Positives = 231/580 (39%), Gaps = 117/580 (20%)

Query: 463 LKIGHN-IKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGR-SSHDIASIA-------Q 510
           L IGHN I +D   + +   YGI ++   D ++MS +LD  R   H + +++        
Sbjct: 48  LWIGHNVIGFDIPQIKKLWGYGIPLKDVADTLVMSRLLDPTRKGGHSLDALSGNEKIDFH 107

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            + +YT  E+L   K  + I              N  V LQL      K  +        
Sbjct: 108 DFSTYT-PEMLAYCKQDVAI--------------NEKVYLQL------KEELSNFGKASI 146

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQV-----------SAEISKNLLSL---------- 609
           +L+  M  +V + E  G  +D D+ +++            AEI + ++ +          
Sbjct: 147 QLEHQMQAIVCEQEKNGFMLDTDIAEEIYTTCLRETNRIEAEIKEFMVPIAVPVKEVIIK 206

Query: 610 ---EENIYD---------------LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ-W 650
              + +IY                ++ E+FNL SP Q+   L  +L +    KTK+G  +
Sbjct: 207 RKKDGSIYSNQLLEGCNVQGDYTKIAWEEFNLGSPAQVNKRL-DRLGWKPTVKTKSGNSY 265

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           K   ++L  I       +K +  W+ L        + L    ++ T RVH    L   +T
Sbjct: 266 KICPENLATIPDTAPEAVKGLKAWKVLETRWKLAQEWLQK--SQETGRVHGRVILTGAVT 323

Query: 711 GRLASLEPNLQNIP------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            R A   PN+ NIP            ++   G + R+AF  P  K L+  D + I+LR+L
Sbjct: 324 HRAAHQGPNMANIPSVPHGKDGILWKMEGMYGAECRQAFKVPEGKLLVGTDAAGIQLRVL 383

Query: 759 AHIAKITPLY--QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           AH     P+Y  QV +   DIH     E  G   +      R  AKT  ++ + G     
Sbjct: 384 AHYMN-DPIYTEQVIDG--DIHTF-NKEALGRYCKD-----RPTAKTFIYAFLLGAGTGM 434

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR--RIHYDEINS 874
           +A+ L     +A + +  ++   P + + ++   +     G+++ + GR  RI  D +  
Sbjct: 435 IASILGCNNRQANEAMANFYEAIPSLKK-LKSQASQAASMGWMKGLDGRVLRIGSDHL-- 491

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                       A++  +QG    I R A +   +  +   +  K    +HDE   EV E
Sbjct: 492 ------------ALSVYLQGGETVIMRLANVFWQRQAKKEGINFKQCAWVHDEWQTEVDE 539

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++     +I V +++ A      L  P+    K+  NW E
Sbjct: 540 DQAQRLGEIQVQAIKDAG-TFFKLNCPMDGEAKIGKNWLE 578


>gi|225390409|ref|ZP_03760133.1| hypothetical protein CLOSTASPAR_04162 [Clostridium asparagiforme
           DSM 15981]
 gi|225043527|gb|EEG53773.1| hypothetical protein CLOSTASPAR_04162 [Clostridium asparagiforme
           DSM 15981]
          Length = 318

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 122/307 (39%), Gaps = 63/307 (20%)

Query: 31  DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM 90
           DG   N I G    +  L++  + +    H A +FD    TFR E+YPDYK  R   PE 
Sbjct: 6   DGTYTNGIFGVLKAVASLVKRQQPD----HVAFVFDKTRDTFRRELYPDYKGTRTSTPEP 61

Query: 91  LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP 150
           L  Q  L+       G   +    +EADD   +   +  ++   + +++ D D +QLV  
Sbjct: 62  LKQQFVLLEQILADAGFKVLYSDRYEADDYAGSLV-MKFRDQIPMVVMTKDHDYLQLVDD 120

Query: 151 ---TTCLYDTVKEEKID---------------------------IEHVIKKWGIPPEKMV 180
                      ++EK D                            EHV+ + G+ P ++ 
Sbjct: 121 EHNVRAWMVQARQEKADELYEKYYGPYGLDKKSINLPEKTFEFTAEHVLAEEGVLPCQIT 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR----------- 229
            L+ + GDS DNIPG+ G+    A LLL EYG +E I       +Q K+           
Sbjct: 181 DLKGIQGDSSDNIPGVKGVA-SAAPLLLNEYGTVEEIYAALHEAEQDKKVLKELQDFWKQ 239

Query: 230 ----------------RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
                            E  L     A LS++L  ++TD+ +   LE   L   +  +L 
Sbjct: 240 NLGISRSPYKALTKTGEEGELCGEAAAMLSKELATIKTDIELDYILEDFELSHYDEKKLR 299

Query: 274 SFLKALE 280
           ++ K L+
Sbjct: 300 AWCKKLD 306


>gi|297851880|ref|XP_002893821.1| At1g34380 [Arabidopsis lyrata subsp. lyrata]
 gi|297339663|gb|EFH70080.1| At1g34380 [Arabidopsis lyrata subsp. lyrata]
          Length = 335

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 12/206 (5%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLP--LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           R E+ P YKA+R         + P   V    +   +P + + G EADD++AT    A +
Sbjct: 113 RRELLPSYKAHRKSPNPGRYSKRPHQFVDEVLRKCNVPVVRLDGHEADDVVATLMEQAVQ 172

Query: 131 EGFAVTIISTDKDLMQLVSPTT----CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            G+   I S DKD  QL+S        L D  +     ++H   ++   P+  +  + + 
Sbjct: 173 RGYRAVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNCDPQSDLSFRCIM 232

Query: 187 GDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAETA 240
           GD +D +PGI    P  G KTA  L++++G+LE++L  A+   + +   +E + +YA+  
Sbjct: 233 GDEVDGVPGIQHVVPAFGRKTAMKLVRKHGSLESLLSAAAVRTVGRPYAQEALTKYADYL 292

Query: 241 RLSRKLVMLRTDVPITIPLEHLILED 266
           R + +++ L+ DV + I  E L+  D
Sbjct: 293 RRNYQVLALKRDVRVEIQEEWLVERD 318


>gi|157869156|ref|XP_001683130.1| mitochondrial structure specific endonuclease I (SSE-1) [Leishmania
           major strain Friedlin]
 gi|68224013|emb|CAJ05050.1| putative mitochondrial structure specific endonuclease I (SSE-1)
           [Leishmania major strain Friedlin]
          Length = 297

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 19/204 (9%)

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLV-RLATQAFG---------IPAIEI 112
           V FD+     R +IY DYKANR  + + +  +  L+ R+A + F          +P  + 
Sbjct: 82  VCFDH-GDGGRRQIYADYKANR--LQKAVTSEFRLIERVAKKVFADEPRESLLVVPDCDA 138

Query: 113 Q----GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV--SPTTCLYDTVKEEKIDIE 166
                  EADD+IAT  +  ++      ++S D DL QLV  +  +  YD   +  +   
Sbjct: 139 GLANLNAEADDMIATLAFFNQQNTRPTVVMSHDYDLYQLVDEAKKSYHYDIRTKHLVSER 198

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V+++ G+PP+ +   ++L GDS DNIPG+ GIG   A  LL++YG+L+ IL    + + 
Sbjct: 199 GVMERVGVPPKLVRDFKSLAGDSSDNIPGVNGIGKVRARNLLKKYGDLDGILFKGIKKET 258

Query: 227 KKRRENILEYAETARLSRKLVMLR 250
               E + E A+ A +SR+LV  R
Sbjct: 259 GHLGELLNEGAKMALISRQLVDFR 282


>gi|207109828|ref|ZP_03243990.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 152

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 5/157 (3%)

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   +  +FG ++ K   + R  AK+INF ++YG+   +L+  L I  +EA  
Sbjct: 1   FLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYGMGSKKLSETLNISLNEAKS 57

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI+ YF RFP I +Y+ + K  + +     T+ GR   +D        I+    R  +NA
Sbjct: 58  YIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYIKGNYLREGVNA 116

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             QGSA+D+ +  M+ V +  +++  + ++LLQ+HDE
Sbjct: 117 IFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDE 152


>gi|169839370|ref|ZP_02872558.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 243

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 8/148 (5%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD--Y 67
           +DG  F YR +YA P LS K DG P   + GF ++  ++++    + +     V +D  +
Sbjct: 1   MDGIRF-YRGYYAMPGLSTK-DGTPTGGVFGFASLSLEIVKKLEPDYVC----VAWDKKH 54

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
            ++  R  I P YKA R   P     Q+P++     AFG P  E   +EADDI+ T + +
Sbjct: 55  TSIRKRLNILPTYKAGRKTPPSDFFNQIPILHDLLDAFGWPLYEFDDYEADDIMGTISLM 114

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLY 155
           AE+ G    ++++D D++QLVSP T +Y
Sbjct: 115 AEQHGIETCLVTSDLDMLQLVSPLTKVY 142


>gi|94969451|ref|YP_591499.1| 5'-3' exonuclease [Candidatus Koribacter versatilis Ellin345]
 gi|94551501|gb|ABF41425.1| 5'-3' exonuclease [Candidatus Koribacter versatilis Ellin345]
          Length = 300

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 17/266 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           +++LVDG+  ++R +YA P  ++  DG  V A+ G    +  ++++      A+H AV  
Sbjct: 2   NVYLVDGTYELFRHYYALPS-AKDADGHEVAAVRGVLASVMGMIRDG-----ATHIAVAT 55

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI---PAIEIQGFEADDIIA 122
           D+   +FRN ++P YK +   +   LL Q  L+     A GI   P IE +  +      
Sbjct: 56  DHVIESFRNNLWPGYKTSE-GVERDLLAQFHLLEEVLSAAGITVWPMIEFEA-DDALAAG 113

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVC 181
                A K    V + + DKDL Q V+ T  +    +    +D   V++K+G+ PE +  
Sbjct: 114 AAAAAANKRVKQVIVCTPDKDLAQCVAGTRVVQLNRRTNVPMDEAGVVQKFGVTPESIAD 173

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-----IKQKKRRENILEY 236
             AL GD+ D  PG+ G G K+++ +L ++ +LE+I  +A                + E 
Sbjct: 174 YLALVGDAADGYPGLKGWGAKSSSAVLAKFLHLESIPPDAREWGVHVAGASTLAATLSEQ 233

Query: 237 AETARLSRKLVMLRTDVPITIPLEHL 262
            + A L R L  LRTD+ +   +E L
Sbjct: 234 HKQALLFRTLATLRTDIQLFDDVEQL 259


>gi|56784845|dbj|BAD82085.1| putative DNA polymerase I 3'-5' exo domain [Oryza sativa Japonica
           Group]
 gi|215686953|dbj|BAG89766.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737221|dbj|BAG96150.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 339

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 100/189 (52%), Gaps = 12/189 (6%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R  + P YKA+RP+ P        +  L  +   +P + + G+EADD++AT T    ++
Sbjct: 132 YRRRLLPSYKAHRPRGPGTGADSRVIDVL--RECNVPVVRVDGYEADDVVATLTEQVLQK 189

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTG 187
           GF V I S DKD  QL+S    L   + E        + H + ++   P   + L+   G
Sbjct: 190 GFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTADLSLRCFIG 249

Query: 188 DSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAETAR 241
           D  D IPGI    PG G KTA  LL+++G+LEN+L  A+   + +   ++ ++++A+  R
Sbjct: 250 DEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYAQDALVKHADYLR 309

Query: 242 LSRKLVMLR 250
            + +++ L+
Sbjct: 310 KNYEVLSLK 318


>gi|288919368|ref|ZP_06413702.1| 5'-3' exonuclease [Frankia sp. EUN1f]
 gi|288349257|gb|EFC83500.1| 5'-3' exonuclease [Frankia sp. EUN1f]
          Length = 304

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 126/277 (45%), Gaps = 29/277 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS--HFAVI 64
           LFL+DG + ++RA + TP      D    +    F  M + LL+ +    + S     V+
Sbjct: 7   LFLIDGHNLLFRACFGTPAEIYSRDAERRDITTQF--MFFALLRKAVTAELDSWPEILVV 64

Query: 65  FDYP-AVTFRNEIYPDYKANRPKIPEMLLP--QLPLVRLATQAFGIPAIEIQGFEADDII 121
           FD       R      YKANR        P   L  V+      GI  IEI   EADD+I
Sbjct: 65  FDGEHGSAERQASDAGYKANRDTSDPARRPLEALADVKTGLDLLGIAWIEIDDVEADDVI 124

Query: 122 ATYT--YIAEKEGFAVTIISTDKDLMQLVSPTTC--------LYDTVKE---EKIDIEHV 168
           AT      AE++   V I+S D+D  QL++ +          + +T +      I    V
Sbjct: 125 ATLAAATCAERD---VLILSMDQDFYQLLADSDSDGTRQSVRILNTAQRPGSRLIGPADV 181

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-----LINASR 223
           + ++G+ P +   L+AL+GD+ DNIPG+ GIG KTAA LL     LE++     LI A  
Sbjct: 182 LARYGVHPAQFADLRALSGDTSDNIPGVRGIGPKTAATLLAGGLALEDLPASGRLIGAKG 241

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPI-TIPL 259
              +     IL +    R+ R + + RT   I T PL
Sbjct: 242 AAIQAAWPQILTWRAMIRMRRDVPLPRTPTGIATTPL 278


>gi|333023285|ref|ZP_08451349.1| putative gp44 [Streptomyces sp. Tu6071]
 gi|332743137|gb|EGJ73578.1| putative gp44 [Streptomyces sp. Tu6071]
          Length = 624

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 162/373 (43%), Gaps = 44/373 (11%)

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V S ME TG   D +  ++    ++      E     L  E  N++S +Q+ D L T L 
Sbjct: 234 VTSLMERTGYAHDLEYAERECVNLTNQQREWESKAQTLGVE--NVNSNQQIIDRL-TVLG 290

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
           +    KTK G     + D + +    +P+ + I+  ++  K + T+ +S     +K   R
Sbjct: 291 YKLTKKTKKGN---ISVDDDVLTSIAHPLTEAIVNAKKAGKWRKTWFESAIKGRDK-NGR 346

Query: 699 VHTFYSLASTMTGR-----------LASLEPN-----LQNIPIKTDLGQKIRRAFISPPT 742
           VH   +     T R           L + +P      L +  +  + G+ +    +S   
Sbjct: 347 VHCSINSCQARTARMTITGAIPAQTLPAGDPYVRHEFLADAAVLGENGEVLEEEHVS--- 403

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA- 801
               S D+S +ELR++A  +    +   F   +D+H + A   FG   E ++   +R A 
Sbjct: 404 ---CSIDFSNMELRVMAAASGDPVMLDAFNRGIDLHNITAIAAFGPMPEGMTKHPKRKAG 460

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K  NF++ +G     +     +P  +A   ++ ++  + G+  + ++ +    + G++ T
Sbjct: 461 KGTNFAVGFGGGWKAVTDGFGVPEPDAKKAVEAFWGTYKGVKRFADQLQRQAIRTGHIYT 520

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
             GRRI  D+              AA+N  IQ SA DIT RA++ +HK+         M 
Sbjct: 521 ATGRRIPVDKTRP----------YAALNYYIQSSARDITVRALLELHKA----GYTPWMR 566

Query: 922 LQIHDELVFEVPE 934
           L IHDE+VF  P+
Sbjct: 567 LVIHDEIVFSFPK 579


>gi|326522204|dbj|BAK04230.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 350

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 13/214 (6%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R  + P YKA+R +   +       V    +   +P +++ G+EADD++AT T    ++
Sbjct: 130 YRRRLLPSYKAHRTR--GVGTGADSRVVDVLRECNVPIVQVDGYEADDVVATLTEQVLQK 187

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTG 187
           G+ V I S DKD  QL+S    L   + E        + H + ++   P   + L+   G
Sbjct: 188 GYRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTVDLSLRCFMG 247

Query: 188 DSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS-RIKQKKRRENIL-EYAETAR 241
           D  D +PGI    PG G KTA  LL ++G+LEN+L  A+ R   K+  +++L ++A+  R
Sbjct: 248 DEADGVPGIQHLAPGFGRKTAVKLLNKHGSLENLLKTAAVRTVGKEYAQDVLVKHADYLR 307

Query: 242 LSRKLVMLRTDVPITIPLEHLILED-CNGPRLIS 274
            + +++ L+ DV + + +  L   D CN   ++S
Sbjct: 308 KNYEVLSLKRDVNVQLDVRWLSARDTCNDTSVLS 341


>gi|282599434|ref|YP_003358324.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
 gi|259048533|emb|CAZ66183.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
          Length = 875

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 110/528 (20%), Positives = 226/528 (42%), Gaps = 80/528 (15%)

Query: 463 LKIGHNIKYDKL-VLHRYGISMRGFEDIMLMSYV-LDSGRS-SHDIASIAQKWLS-YTRK 518
           L + H++  DK+ +L    I  RG +D  +++Y+ L+S  S S+ +  + Q+    +++ 
Sbjct: 276 LYMAHDL--DKVGMLRGLEIMCRGMQDTKVVAYLALNSTSSPSYSLKDLGQEHAGDWSQG 333

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           + +K  +  IP+D     Q+ E+   ++   + +W    P ++ EK   +Y  L     +
Sbjct: 334 DDIKDIRK-IPLD-----QLMEYNAVDAVTTMYVWNKYYPVMVAEKQDQLYHGLFMESQE 387

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISK--------------------------------NL 606
           ++   E+ G+ +    L +V  E++K                                 L
Sbjct: 388 MIIHTELVGMPMCPKRLAEVETELTKLRDGYFNTIMQDPMVHRTTLLLREEAMVKKNATL 447

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-----N 661
            ++++ I D S  +FN  S  Q   +L   +  P   KT TGQ  T   +L ++      
Sbjct: 448 KTIQKTIDDFSHIEFNPGSGPQKALLLHKVIGLPVLDKTPTGQPATGGDELTKLIRHPAG 507

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR-----VHTFYSLASTMTGRLASL 716
                +++ +++  ++ KI S +   +P     R +      +H  ++L  T++GRL+S 
Sbjct: 508 ASFKGLLQAMIDLDRVQKILSAF---IPAFKAGRLKADGMLYLHGSFNLGGTISGRLSSS 564

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PN+QN+P  +  G+ I+  F++        AD++ +E RI A + +     +V+ +  D
Sbjct: 565 DPNMQNLPSGSAYGKLIKSIFMAAKGYLFGGADFAALEDRINALLTRDPNKIKVYTDGYD 624

Query: 777 IHRM------------VAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
            H M            +   +  +N I+ + P +R  AK  +F + YG S   L   +  
Sbjct: 625 GHSMRTFAFWPEKCIGIVDTVSSINSIQHIYPGLRGEAKAPHFLLQYGGSWMGLVKNVGF 684

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              EA      Y   +    +++        + GYV+  FG ++    + +   +++   
Sbjct: 685 AEDEAKRIEDNYHKLYSVSADWVATEIQKATKQGYVQLAFGLKLRTPLLGNTMLNLKVTP 744

Query: 884 ERAAINAPIQGSAAD------ITRRAMISVHKSLEDHKLATKMLLQIH 925
           ++AA  +   G+A        +  RA ++  K +    LA+K   ++H
Sbjct: 745 KQAAAESRSAGNAVSGQSWGLLNNRAAVAFRKRV----LASKWREEVH 788


>gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii]
 gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 259

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 28/199 (14%)

Query: 723 IPIKTDLGQ---KIRRAFIS--PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           IP++  L +   K+R+AF +       L+ ADY Q+ELR+LAH+     + + F    D 
Sbjct: 19  IPLQPALEKDRYKVRQAFTADVAAGHTLVVADYGQLELRLLAHMTDCKSMLEAFVLGGDF 78

Query: 778 HRMVAAEIFG--------------VNIEKVSP---------QMRRHAKTINFSIIYGISP 814
           H   A  ++                + E  SP           RR AK +NFSI YG + 
Sbjct: 79  HSRTAVGMYDHIKDAIRDNKVLLEWDGEGESPLPLVKDLYASERRKAKVLNFSIAYGKTA 138

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
             LA   +  + EA   + +++     + ++ EKTK   RQ G V T+ GR      IN+
Sbjct: 139 HGLAADFKTSKEEAQATVDKWYADRFEVRQWQEKTKEGARQEGKVRTLLGRTRPLPGINA 198

Query: 875 PKSSIRNINERAAINAPIQ 893
           P    +  +ERAAIN PIQ
Sbjct: 199 PDFKSKGHSERAAINTPIQ 217


>gi|242059405|ref|XP_002458848.1| hypothetical protein SORBIDRAFT_03g041390 [Sorghum bicolor]
 gi|241930823|gb|EES03968.1| hypothetical protein SORBIDRAFT_03g041390 [Sorghum bicolor]
          Length = 350

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 12/194 (6%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R  + P YKA+R +   +       V    +   +P + + G+EADD++AT T    ++
Sbjct: 127 YRRRLLPSYKAHRAR--GVGTGADTRVVNVLRECNVPVVRVDGYEADDVVATLTEQVLQK 184

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTG 187
           G+ V I S DKD  QL+S    L   + E        + H + ++   P   + L+   G
Sbjct: 185 GYRVVIASPDKDFKQLISDDVQLVMPIPEIGRWSFYTLRHYVAQYKCDPTADLSLRCFMG 244

Query: 188 DSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAETAR 241
           D  D +PGI    PG G KTA  LLQ++G+LEN+L  A+   + +   ++ + ++A+  R
Sbjct: 245 DETDGVPGIQHLVPGFGRKTAVKLLQKHGSLENLLNTAATRTVGKDYAQDALTKHADYLR 304

Query: 242 LSRKLVMLRTDVPI 255
            + +++ L+ DV +
Sbjct: 305 KNYEVLSLKRDVSV 318


>gi|21234370|ref|NP_640280.1| DNA polymerase [Vibrio phage VpV262]
 gi|21064883|gb|AAM28367.1| DNA polymerase [Vibrio phage VpV262]
          Length = 661

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 120/548 (21%), Positives = 238/548 (43%), Gaps = 66/548 (12%)

Query: 465 IGHNIKYDKLVLHRYGI--SMRGFEDIMLMSYVLDSG-----RSSHDIASIAQKWLSYTR 517
           + HN K+D   L R G+  S     D ML  YVL        + +  + ++A+++L  T+
Sbjct: 92  VAHNAKFDIKWLIRAGLDPSRILVADTMLAEYVLTGNLKAGKKGALTLGALAKQYLGVTK 151

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAI-------ENSNVILQ---LWLLLRPKLIVEKLLH 567
             +         +DK+    V    I        N + I Q   LWL LR +++   ++H
Sbjct: 152 DPL---------VDKLMRGGVSPRVIPKSLLERRNKSDIFQTRNLWLKLRDEMMERDVIH 202

Query: 568 V-YER-LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
           + Y R L  P   V++ +E+ G+ +D++ + +     S+ +  +E ++ D+   + N  S
Sbjct: 203 LFYNRCLLSP---VLADIELNGVHLDKERVCEEHDIASRRMAEVEADLMDMIDGR-NPRS 258

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC---GDNPIIKNILEWRQLSKIKS 682
             Q+ + ++  LKF    K +  +W+ T +++ Q           +    E+ QL+   S
Sbjct: 259 VPQMQEFIYDVLKFKP-LKKRGVEWRPTGEEVLQFEARTKKQQAFLDLKKEFAQLNADLS 317

Query: 683 TYADSLPNHINKRTQRV-HTFYSLASTMTGRLAS--------LEPNLQNIPIKTDLGQKI 733
              D     + +R   + +  ++ A T+T RL+S        + P  ++I ++    +  
Sbjct: 318 KNLDYFYGVVTEREDCLFYAQFNQAQTVTHRLSSSGIKTKFEMYPKAKSIQLQNSPRKYK 377

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R      P   +I  D +QIE R+  +I + T + Q   + +D+HR  A+ +   + E+V
Sbjct: 378 RLYSARNPDWYVIEMDGAQIEFRVAGYIGQDTRICQDIVDGVDVHRFTASVLNHCDEEEV 437

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +   R  AK   F  +YG   +    Q+         Y + + +++  I +  +     V
Sbjct: 438 TKDQRTDAKPDTFKPLYG-GQYGTDDQMA--------YYEAFRNKYQDITQAQQDWLMKV 488

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI-NAPIQGSA-ADITRRAMISVHKSL 911
            +N  +    G   +Y   N+  SS     +  ++ N P+Q  A A+I   A++++   +
Sbjct: 489 LRNKEITHPTGITFYYP--NASMSSSGYCQDFPSVCNYPVQNLATAEIIPIALVAIWHVM 546

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQI-------IVHSMEKACLPKINLRVPLKV 964
           +  KL + ++  +HD ++ E P +E+    +I        V+     C   +   VPL V
Sbjct: 547 KAMKLQSFLVNTVHDSVISESPRDELELMYEISKWAFLWWVYEFLDICY-DLQFNVPLGV 605

Query: 965 NIKVSNNW 972
             +   +W
Sbjct: 606 GYQAHTHW 613


>gi|111223170|ref|YP_713964.1| putative 5'-3' exonuclease [Frankia alni ACN14a]
 gi|111150702|emb|CAJ62403.1| putative 5'-3' exonuclease [Frankia alni ACN14a]
          Length = 389

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 108/257 (42%), Gaps = 46/257 (17%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L D  S  +RAFY  P   R  DG PVNA+ G  ++L + +   R   + + F   
Sbjct: 21  GGLLLADAPSLYFRAFYGVPRSVRAPDGTPVNAVRGLLDVLARQIVEVRPRGLVACFDAD 80

Query: 65  FDYPAVTFRNEIYPDYKANRPKIP------------------------------------ 88
           +  PA  FR  +   YKA+R  +P                                    
Sbjct: 81  W-RPA--FRVALLASYKAHRVAVPAGRAGVSAPGGAVVGDAAAGRVGAGGDGAAGGEVEE 137

Query: 89  --EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT--YIAEKEGFAVTIISTDKDL 144
             + L  QLP++     AFGI      GFEADD+IAT    +     G  V I++ D+DL
Sbjct: 138 VADELTVQLPIIDAVLDAFGIARAAAAGFEADDVIATLATRHGGGARGGGVDILTGDRDL 197

Query: 145 MQLVSPTTCL---YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
            QLV     +   Y   K   +D   V  ++ IP         L GD  D +PG+ GIG 
Sbjct: 198 FQLVDDAAGVRVRYAVEKFAVVDEASVRARYDIPGRAYADFAVLRGDPSDGLPGVAGIGA 257

Query: 202 KTAALLLQEYGNLENIL 218
           KTAA LL  +G+L  IL
Sbjct: 258 KTAAALLNRFGSLAAIL 274


>gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1]
 gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1]
          Length = 618

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 183/428 (42%), Gaps = 47/428 (10%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           KL V K L VYE     +  + +QM   G+ +D++    + ++++ +     E       
Sbjct: 216 KLGVPKTLAVYEHR---VARICAQMVRAGLVLDEEYTTGLQSDLAYDADRYSEVALGYGV 272

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA----------QDLEQINCGD-NPI 667
           E  N  S +Q+   L   L      KT +G  K             +D + I   + N +
Sbjct: 273 ESVN--SARQVSAALL-DLGETLTEKTASGALKVDKAVLMALADLDRDWKPIRSREPNVL 329

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
              +L  ++  K +S YAD+   +++ +  R+H         T R++  +P +Q +P   
Sbjct: 330 ADAVLRSKRAGKWRSAYADNFLENVDAQG-RIHPNVQSMQARTFRMSVTQPAVQTLPSSD 388

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            +   IRRA ++ P + ++S D+  +ELR+LA +A +  +        D+H   A  +FG
Sbjct: 389 KM---IRRALLADPGEVMVSVDFQAVELRVLAALADVKRMKAAIAAGEDLHSFTARLVFG 445

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
              +  + + R+ +K I F  +YG     ++ Q   P       + +Y   +P +    +
Sbjct: 446 ---DGFTDKDRKVSKGIAFGKVYGGGAATVSRQTGAPLGAVQRAMAKYDQVYPEVGRAAK 502

Query: 848 KTKNFVRQNGYVE-TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
             +     N  V  +I G R+  D   S           A  N  +Q +A D   +A+I 
Sbjct: 503 DWRIEAFNNHMVGISITGHRLPLDRDRS----------YAITNYLVQSTARDCLGQALI- 551

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR-VPLKVN 965
               +++  L   + L IHDE++  VP+ E    S+ I  +M        +LR VP++ +
Sbjct: 552 ---HMDEAGLVPYLRLPIHDEVLASVPKAEAEEISRAIAKAM------TFSLRGVPIEAD 602

Query: 966 IKVS-NNW 972
            ++   +W
Sbjct: 603 AEIGKRSW 610


>gi|224135903|ref|XP_002327332.1| predicted protein [Populus trichocarpa]
 gi|222835702|gb|EEE74137.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 22/232 (9%)

Query: 73  RNEIYPDYKANRPKIP-EMLLPQ-LPLVR------LATQAFGIPAIEIQGFEADDIIATY 124
           R ++ P YKA+R K   +   PQ  P  R      + T+   +P ++I+G EADD++AT 
Sbjct: 125 RRQLLPSYKAHRRKFSRKSSAPQKYPAERSHVVMDVLTKC-NVPVVKIEGHEADDVVATL 183

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
                +    V I S DKD  QL+S    +   + E        ++H I ++   P   +
Sbjct: 184 AGQVLQNRHKVVIASPDKDFKQLISEDVQIVLPIAELNRWSFYTLKHYISQYNCDPCSDL 243

Query: 181 CLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENIL 234
             + + GD +D +PGI    PG G KTA  LL+++G+L+N+L  A+   + +K  ++ + 
Sbjct: 244 SFRCIMGDEVDGVPGIQNVAPGFGRKTALKLLKKHGSLQNLLDAAAVRTVGKKYAQDALT 303

Query: 235 EYAETARLSRKLVMLRT-DVPITIPLEHLILED-CNGPRLIS-FLKALEFTK 283
           ++++  R + +++ LR  DV + +  E L+  D CN   ++S F K LE +K
Sbjct: 304 KHSDYLRRNYEILALRRWDVDVQLKEEWLVERDRCNDSIILSNFFKLLEQSK 355


>gi|114592896|ref|XP_001147297.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 311

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 2/169 (1%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
           R  F+S      ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   V +E
Sbjct: 139 RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVE 198

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + ++++YG    RLA  L +P  EAA +++ +  ++  I ++      
Sbjct: 199 QVTHADREQTKKVVYAVVYGAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIA 258

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
              Q G V +I GRR     I++    +R   ER A+N  +Q  +  + 
Sbjct: 259 QCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQAQSQHLC 307



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 47/75 (62%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  ++  L+ P+I +++ ME   IQ++++ +++ SA +   L  LE+  + ++GE+F + 
Sbjct: 10  LWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLIM 69

Query: 625 SPKQLGDILFTKLKF 639
           S  QL +ILF KLK 
Sbjct: 70  SNNQLREILFGKLKL 84


>gi|302669710|ref|YP_003829670.1| 5'-3' exonuclease C-terminal domain-containing protein
           [Butyrivibrio proteoclasticus B316]
 gi|302394183|gb|ADL33088.1| 5'-3' exonuclease C-terminal domain-containing protein
           [Butyrivibrio proteoclasticus B316]
          Length = 385

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 138/345 (40%), Gaps = 72/345 (20%)

Query: 9   LVDGSSFIYRAFYAT---PLLSRK-------------HD--GLPVNAIAGFCNMLWKLLQ 50
           L+DGSS +   +Y      LL  K             H+  G   NAI G    + K++ 
Sbjct: 48  LIDGSSMLVTNYYGNLPKALLFEKDPEKKEKLYSQILHNDKGQYTNAIYGMMRTILKIIA 107

Query: 51  NSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAI 110
             +     +H    FD    TFR E YPDYK NR + PE L  Q   +       G    
Sbjct: 108 EQK----PTHMMFAFDMTRDTFRREKYPDYKGNRGETPEPLKEQFENMEKLLLEMGFQVF 163

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKE--EK 162
               FEADDI+ +     EKE     II+ D D +QLVS  T ++      +T  E   K
Sbjct: 164 FDNKFEADDIVGSVVTKFEKE-IPSFIITKDHDYLQLVSDYTRVWLIQTKQETADELLNK 222

Query: 163 IDIEH--------------------VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
              E+                     + ++G+ PE++  L+ + GD+ DNIPG+ G+   
Sbjct: 223 YGAEYGWNSKLAAIPDKAFEVTPPLCLSEYGVKPEQIPDLKGIQGDTSDNIPGVKGVS-S 281

Query: 203 TAALLLQEYGNLENIL-------INASRIK------------QKKRRENILEYAETARLS 243
            A  LL EYG +E I         +A  +K             +   + + EY + A LS
Sbjct: 282 AAIPLLAEYGTIEKIYEAIDECGGDAKALKALGAHWKEDLGISRSPMKALTEYRDMAFLS 341

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           ++L  +R D      LE   + + N  R         F  LI ++
Sbjct: 342 KELAQIRRDYDTGKTLEDFRI-NINKDRAKELFLEYGFKSLIEKL 385


>gi|328479632|gb|EGF48820.1| DNA polymerase I [Lactobacillus rhamnosus MTCC 5462]
          Length = 105

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 4/102 (3%)

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +I+S   ++R   ER A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+F
Sbjct: 4   QIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIF 63

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           E P  E+    Q++   M+ A    ++L VPLKV       W
Sbjct: 64  EAPTAEMAQLGQLVPKIMDSA----VSLAVPLKVESHYGPTW 101


>gi|40807290|ref|NP_047956.2| gp11 [Streptomyces phage phiC31]
 gi|579076|emb|CAA53907.1| unnamed protein product [Streptomyces phage phiC31]
 gi|40313247|emb|CAA07135.2| gp11 [Streptomyces phage phiC31]
          Length = 617

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 144/326 (44%), Gaps = 34/326 (10%)

Query: 655 QDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +D E+I   + NP+ + +L  ++  K  +TYAD   N+ +    R+H   +     TGR+
Sbjct: 310 RDWERIGAREPNPLAEAVLRAKRAGKWVTTYADRFANNHDPHG-RIHPNINTLQARTGRM 368

Query: 714 A-SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           + + +   Q +P    +   IRRA +   P   + S D+  IE+R+LA +A +  +   F
Sbjct: 369 SINGDFAAQTLPSSDWM---IRRAIVGDAPDHIMGSVDFQAIEMRVLAALADVKRMKDGF 425

Query: 772 ENS---LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            N     DIH   A  I G+   K   + R+  K   F  +YG     +A Q     +E 
Sbjct: 426 VNGGSDFDIHMYTAQLIKGLEATK---RDRKVFKGAGFGKVYGGGVATIARQTGATEAEI 482

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE-TIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +  Y   FP I     + +   R  G V  ++ GRR+  D         RN    A 
Sbjct: 483 ARAVAEYDRVFPEIKRASSRWQREARGTGLVTVSVTGRRLPLD---------RN-RTYAV 532

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N   Q +A D+  +AM++    + D  L   M L IHDE+VF  P+ +    ++ I   
Sbjct: 533 VNYQCQSAARDVLGQAMLN----MRDAGLLDYMKLPIHDEIVFSAPKAD----AKDIARE 584

Query: 948 MEKACLPKINLRVPLKVNIKVSN-NW 972
            EK C+      VP+  +  +   +W
Sbjct: 585 FEK-CMTMDLFGVPVVADADLGGRSW 609


>gi|167464943|ref|ZP_02330032.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384416|ref|ZP_08058102.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150774|gb|EFX44234.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 388

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 136/329 (41%), Gaps = 79/329 (24%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI----TPLYQVFENS 774
           NLQN+P K   G ++R  FI       I AD  QI+ RI+AHI  +      + Q+F + 
Sbjct: 26  NLQNLPAKG-AGVRVRNCFIPRKGFTFIGADLGQIQPRIMAHIMYVKYGDNSMRQIFVDG 84

Query: 775 LDIHRMVAAEIFG----VNIEK-----VSPQM-------------RRHAKTINFSIIYGI 812
           +D++  +A   FG    V ++K     VS Q              R+  KT   ++ Y  
Sbjct: 85  VDLYTKMAMMTFGLPEQVCLDKAWYDPVSGQGGFGGEPPATAYYPRKMMKTGQLAVSYDQ 144

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           SP   A ++ +    A  + + +   FP     ++  +  ++++GYVET+FGR+  + + 
Sbjct: 145 SPRAFAKKMNVTEDVAHMFFENFDETFPSFKPMVKDYREMMKRDGYVETLFGRKRRFPDF 204

Query: 873 N-----------------SPKSSIRNINE------------------------------R 885
           N                 S +  ++NI                                R
Sbjct: 205 NEVAAFVKRNEQRLYRLYSERKRLQNITNPRDADRKRLTAVQDEIDILSAKRGLVGYWIR 264

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AA NA IQG+ ADI +  +I +  +    +   +M   IHDE+   +P ++ T  +  ++
Sbjct: 265 AAFNAVIQGTGADILK--LIGIRNAAVCRERGWEMNASIHDEIKNSIPNDQFTAETIDLI 322

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + +    +  + L VPL  +  +   W +
Sbjct: 323 NEI---MMKTVELSVPLVTDTVIEPCWMQ 348


>gi|33322741|gb|AAQ07105.1|AF496417_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 101

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 67/101 (66%), Gaps = 2/101 (1%)

Query: 720 LQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP +T+ G++IR+AF+ S P   + S DYSQIELR+LAH++    + + F+   DIH
Sbjct: 1   LQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIH 60

Query: 779 RMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
              A +IF + ++++V+    R AK +NF I+YGIS   L+
Sbjct: 61  AHTAMKIFHLSSVDEVTSLQXRRAKAVNFGIVYGISDXGLS 101


>gi|33322851|gb|AAQ07161.1|AF496471_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 95

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/97 (45%), Positives = 66/97 (68%), Gaps = 4/97 (4%)

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           ++R+  ER AIN+PIQGSAADI + AMI+V K L++  L TKM++Q+HDEL+F+VP +E+
Sbjct: 1   NVRSFAERTAINSPIQGSAADIMKIAMINVQKKLDELGLKTKMVVQVHDELIFDVPADEL 60

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            T  +I+   M+ A    + L VPL  +    ++W E
Sbjct: 61  ETIXKIVPSVMQAA----VKLDVPLVADAGWGHDWYE 93


>gi|237651592|ref|YP_002899062.1| DNA polymerase [Roseophage DSS3P2]
 gi|220898062|gb|ACL81320.1| N4 DNA pol-like protein [Silicibacter phage DSS3phi2]
          Length = 876

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 124/563 (22%), Positives = 214/563 (38%), Gaps = 105/563 (18%)

Query: 465 IGHNIKYDKLVL----------------HRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           I HNI YD  VL                    + +  +E   L++Y+  +  + +++   
Sbjct: 246 IYHNICYDAYVLIYQLFMDHILDQEGFLEGLDVMLENWECTQLITYLATNSCAGNELGLK 305

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISD-SQVQEHAIENSNVI--LQLWLLLRPK---LIV 562
           AQ           +    +  ++ I D +Q++   +   N++  L  W +       +I 
Sbjct: 306 AQA----------QEFAGNYAVEDIQDITQIELPKLLEYNLVDGLSTWFVYNKHYQTMIN 355

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQD----LLKQVSAEISKNL------------ 606
           ++   +Y  L K  +  + QM++TG+ ++ D    L  Q+ AE   N+            
Sbjct: 356 DQQFEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKLNDQLGAESEHNVWKMLQTKIVQGF 415

Query: 607 -LSLEENIY---------------DLSGEK-----FNLSSPKQLGDILFTK--LKFPSGA 643
              LEEN                 DL   +     FN  S  QL  +L++   L  P   
Sbjct: 416 VYQLEENALKKKNEKLKTKVVTRVDLGSTQDLMVAFNPGSAPQLQRLLYSDEFLGLPVLD 475

Query: 644 KTKTGQWKTTAQDLEQ-----INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            T +G   T A  LE+     I+      +  +LE++  + I ST+  +           
Sbjct: 476 LTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEYKASAIILSTFLPAFLKACPGPDGW 535

Query: 699 VHTF--YSLASTMTGRLASLEPNLQNIP------IKTDLGQKIRRAFISPPTKKLISADY 750
            + F  + L  T++GRL+S  PNLQNIP      +K+ L + I++ F +PP    +  D+
Sbjct: 536 HYLFGNFRLGGTLSGRLSSNNPNLQNIPSSAGGPLKSRLAKLIKKCFEAPPGWLFVGLDF 595

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ-------------- 796
             +E RI A   K     +V+ +  D H + A   FG  +  + P               
Sbjct: 596 DSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYFGDQMPDIDPSSVDSINSIAKKYKP 655

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           +R+ +K   F++ Y  +   L       + +A D   +Y   +    EY+EK      ++
Sbjct: 656 LRQESKAPTFALTYQGTFHTLMVNCGFSKEKAQDIENKYKKMYKVSIEYVEKKLEQATRD 715

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD-----ITRRAMISVHKSL 911
           GY+   FG R+    +           + AA      G+A       +  RA     K +
Sbjct: 716 GYITVAFGLRVRTPLLAQTILGTNKTPKEAAAEGRTAGNAMGQSFCMLNSRAASEFMKKV 775

Query: 912 E--DHKLATKMLLQIHDELVFEV 932
               HKL  K    IHD   + V
Sbjct: 776 RASKHKLDIKPCAHIHDAQYYLV 798


>gi|156122484|gb|ABU50233.1| DNA polymerase [Cyanophage S-CBP1]
          Length = 586

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 137/296 (46%), Gaps = 48/296 (16%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           R  RVH   S+A T+T R A   PNL  +P  +DL    RR F + P   ++ AD S IE
Sbjct: 321 RKDRVHHHCSVA-TVTHRCAHRNPNLAQVP--SDL--NFRRLFCASPGHIMVGADLSGIE 375

Query: 755 LRILAH-IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAH +A+       +++      ++  +I   N +K+    RR  KT+ ++ +YG  
Sbjct: 376 LRMLAHYLAR-------YDDGRYGDILLHGDIHQENADKIGIS-RRLVKTVTYAFLYGAG 427

Query: 814 PFRLATQLRIPRSEAADYIKR--------YFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
             ++   L   +  + D  K+        Y    PG+ + +E TK      G++ +I GR
Sbjct: 428 DQKIG--LSYDQGLSPDKAKQKGKEIRQAYMDAIPGLEKLVEATKK-AADRGFIRSIDGR 484

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK---SLEDHKLA-TKML 921
            I+ D            +   A+N  +Q SA  I +R M+  +    ++++  LA T  L
Sbjct: 485 HINVD------------SSHKALNMLLQSSAGCIAKRWMVIANDNFPTIDNEYLAHTHQL 532

Query: 922 LQIHDELVFE---VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             IHDEL FE   +  E++ T  ++      +      NLR+P+    K+ + W +
Sbjct: 533 AFIHDELQFECLPLYAEDLKTHLELCAELAGEY----YNLRIPIAAEGKIGSTWAD 584


>gi|329928821|ref|ZP_08282660.1| 5'-3' exonuclease, SAM domain protein [Paenibacillus sp. HGF5]
 gi|328937464|gb|EGG33885.1| 5'-3' exonuclease, SAM domain protein [Paenibacillus sp. HGF5]
          Length = 193

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 11/188 (5%)

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           +  GIP + + G+EADD I T   +A + G    V I+S D DL+QLV+ +T +    K 
Sbjct: 1   ECLGIPNLGVVGYEADDCIGT---LARRFGDSMNVMILSGDHDLLQLVNDSTSVIIMKKG 57

Query: 161 E----KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
                    E +  + G+ P +++ ++ L GD+ DN PG+ GIG KTA  L+QEY ++E 
Sbjct: 58  HGNYMHYTPETLYAEKGLSPRQVIDVKGLMGDTSDNYPGVRGIGEKTAVKLIQEYESVEG 117

Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           IL N   +  K  R  I    E   LSR L  +  +VP+   L+ L     +  R ++ L
Sbjct: 118 ILANLDSLT-KGVRTKIEADLEMLHLSRALAEIHCEVPMECELD-LCRLSVDHERALTKL 175

Query: 277 KALEFTKL 284
           + LE   L
Sbjct: 176 EELEMKSL 183


>gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148]
          Length = 640

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 160/371 (43%), Gaps = 49/371 (13%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN++SPKQL + L   L  P   +   G+   + Q L      D+ +I+  LEW++  K 
Sbjct: 300 FNINSPKQLVEKLTVILGEPP--RDANGKPSASRQALRSY-AADHEVIQIYLEWKRCEK- 355

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           +    +S+   ++  T  V   Y      +GR++ ++PN Q IP      ++ R    +P
Sbjct: 356 RRQMIESIQEKMDG-TGFVRASYMQLGAESGRMSCIKPNNQQIPRD----KQFRSCVEAP 410

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
               L+ AD+ Q+ELR+ A +A    +   F+   D H  V A+  G +        R+ 
Sbjct: 411 EGWLLVDADFGQMELRLAAAVADDERMIAAFQAGEDPH-TVTAKAIGCD--------RQT 461

Query: 801 AKTINFSIIYGISPFRLATQLR---------IPRSEAADYIKRYFHRFPGIHEY------ 845
           AK+ NF ++YG      AT LR         + +  AAD    +   F G+ ++      
Sbjct: 462 AKSANFGLLYGSG----ATGLRNYAGGMGITMTQERAADIRNEWLGVFQGVAKWQRDNAK 517

Query: 846 -IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
             ++T+++      V     RR    ++N  + ++R        N PIQG+ A I + A+
Sbjct: 518 EADETQDYKWAATRVPISGMRRYLQGDMN--RLTVR-------CNTPIQGAGAAILKCAL 568

Query: 905 ISVH-KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            ++  K  E  +   ++   +HDE++  V E      +  +   ME A    +   +P  
Sbjct: 569 GNLWPKVKEAGEDTVRIAAAVHDEILLLVRENAAQEWAATLKQVMEDAEAKWLG-EIPAL 627

Query: 964 VNIKVSNNWQE 974
             + V   W E
Sbjct: 628 AEVSVGKTWSE 638


>gi|266620231|ref|ZP_06113166.1| putative 5'-3' exonuclease [Clostridium hathewayi DSM 13479]
 gi|288868174|gb|EFD00473.1| putative 5'-3' exonuclease [Clostridium hathewayi DSM 13479]
          Length = 355

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 137/351 (39%), Gaps = 81/351 (23%)

Query: 5   NHLFLVDGSSFIYRAFYA----------TPLLSRKH--------DGLPVNAIAGFCNMLW 46
           +   +VDGSS +   +YA          T    +KH        DG   NAI G    + 
Sbjct: 3   DKFVIVDGSSMLSTCYYAVLPREIMFAKTEEEKQKHYGKILHAGDGTYTNAIFGMLKTIA 62

Query: 47  KLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
            LL    K+    + A +FD    TFR E+Y +YK  R   PE L  Q  L+    +  G
Sbjct: 63  SLL----KKQEPGYIAFVFDKTRDTFRRELYAEYKGTRGATPEPLKQQFVLIESILEEAG 118

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKI 163
              +    +EADD   +   +  +    V +++ D D +QLV+            K+EK 
Sbjct: 119 FRVLYSDDYEADDYAGSLV-MKFRSQVPVVVMTKDHDYLQLVNDEYNVRAWMVQAKQEKA 177

Query: 164 D---------------------------IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
           D                            EHV  + G+ PE++  L+ + GD+ DNIPG+
Sbjct: 178 DELYEKYYGPYGLTKKDVNLPEKTFEFTAEHVFAEEGVWPEQITDLKGIQGDTSDNIPGV 237

Query: 197 PGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRE----------------------- 231
            G+       LL EYG +E +   I+ +   +K+ +E                       
Sbjct: 238 KGVS-SAVPPLLAEYGTVEAMYEAIHDAETDKKQLKELQDFWKEKLGITRTPYKALTKTG 296

Query: 232 --NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
               L     A LS++L  ++TD+P+ + L    +E      L  + K L+
Sbjct: 297 EDGELCGEAAALLSKRLAAIKTDIPLDLELADFSVEKYQEKVLRKWCKKLD 347


>gi|150017025|ref|YP_001309279.1| 5'-3' exonuclease [Clostridium beijerinckii NCIMB 8052]
 gi|149903490|gb|ABR34323.1| 5'-3' exonuclease [Clostridium beijerinckii NCIMB 8052]
          Length = 340

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 49/255 (19%)

Query: 5   NHLFLVDGSSFIYRAFYAT------------------PLLSRKHDGLPVNAIAGFCNMLW 46
           ++L L+DGSS +   F+                      L +   G   N +      + 
Sbjct: 3   DNLLLIDGSSLLSCCFFGNLPREYRFAKTDEEKDKYIEKLRQSPKGEFTNGVFTMMASML 62

Query: 47  KLLQNSRKESIASHFAVIFDY-PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAF 105
           K+++N       +H AV +D     TFR ++Y +YK  R  +   L  Q  L +   +  
Sbjct: 63  KMIKNQN----PTHIAVAWDLTKEFTFRKKLYSEYKGTRKDMRSELGSQFALAQKVLREM 118

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLV----------SPTTC 153
            +P    + +EADDII T   +A+K G    V+I + D+D +QLV          S    
Sbjct: 119 NVPEFVFKEYEADDIIGT---LAKKFGRSMRVSIWTKDQDCLQLVDDNVRVWLITSKCAD 175

Query: 154 LYDT----VKEEKI-------DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
           +Y++    +KE  I         ++V   +G+ P +++  +A+ GDS DNIPGI G+G K
Sbjct: 176 MYESLGINIKELNIPSGVFEFTTQYVNHFYGVDPIQIIDRKAIEGDSSDNIPGINGVGEK 235

Query: 203 TAALLLQEYGNLENI 217
           +   LLQE+  +E I
Sbjct: 236 SVIPLLQEFETVEGI 250


>gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 375

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 129/316 (40%), Gaps = 66/316 (20%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI----TPLYQVFENS 774
           NLQN+P K   G ++R  FI       + AD  QIE RI+AHI         + Q+F + 
Sbjct: 26  NLQNLPAKG-AGVRVRNCFIPRKGFTFVGADLGQIEPRIMAHIMHTKYGDNSMRQIFMDG 84

Query: 775 LDIHRMVAAEIFGVN-----IEKVSP----QMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           +D++   A + FG+       E   P    + R+  KT   ++ Y  SP   A ++ +  
Sbjct: 85  VDLYTTGAMQTFGLEEKYCLDEAYDPTGTFEPRKLMKTGQLAVSYDQSPKSFAKKMNVTE 144

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN------------ 873
             A  + + +   +P     ++  +  ++  GYVET+FGR+  + + N            
Sbjct: 145 EVAHMFFENFDRTYPSFRTMVKDIREEMKSCGYVETLFGRKRRFPDFNEVASQTARNEQK 204

Query: 874 -----SPKSSIRNINE------------------------------RAAINAPIQGSAAD 898
                + +  +RN                                 RAA NA IQG+ AD
Sbjct: 205 LIRLYTERKRLRNKKNPTAADMRRLTAVQDEIDILSEKRGLVGYWLRAAFNAVIQGTGAD 264

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +  +I +  +    +   +M   IHDE+   +P E++T  +  +++ +       + L
Sbjct: 265 ILK--LIGIRNAEICRERGWEMNASIHDEIKNSIPNEQLTEGTIDLINEI---MTQTVEL 319

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL  +  +   W +
Sbjct: 320 SVPLITDTVIEPRWMQ 335


>gi|300781564|ref|ZP_07091418.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
 gi|300533271|gb|EFK54332.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
          Length = 1474

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 125/575 (21%), Positives = 236/575 (41%), Gaps = 60/575 (10%)

Query: 418  DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI-KYDKLVL 476
            DD     +  F+ L+ ++      +   T +I   L    E    + +GHNI +YD  VL
Sbjct: 914  DDQHVTDDPGFVRLATYSV--GGAEPVATTDIAGELIPLLEQADTI-VGHNIVQYDLPVL 970

Query: 477  HR-YGISMRGF------EDIMLMSYVLDSGRSS--HDIASIAQ------KWLSYTRKEIL 521
             R YG+ +          D ++M  +   G  +  +++ ++A       K L+ +   + 
Sbjct: 971  QRLYGLDVGALIKAGKVRDTLIMVRLASGGNRNLEYNLDAVAHRCGVDGKLLAGSESALK 1030

Query: 522  KSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
               K     DKI   + +  E+A+++      ++  L P  I E +   Y R +   +  
Sbjct: 1031 ALAKQYGGFDKIPVDNPEYVEYALQDVRANGAVYEKLLPATI-EAVGEDYLRREHEKMHS 1089

Query: 580  VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG----EKFNLSSPKQLGDILFT 635
            +S +E  G+++D   +    AE ++    +   + D  G     K   +S      I   
Sbjct: 1090 LSVVESHGVRVDTAKVDAFIAEEAQTKAEIRAWLVDTVGIPDEGKAPWASAAGKQAIAEY 1149

Query: 636  KLKFPSGA-KTKTGQWKTTAQDLEQIN--CGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
              +F   A +T  G   T+A+ L  +     D P +  +    +     ST A ++  ++
Sbjct: 1150 LERFGVAAPRTAKGAISTSAKALNDLAEAHADVPEVVELAAKMETLLQSSTPATTIKKYL 1209

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYS 751
              R +RV+   + +S  TGRL++  P +     + +   + R   ++    ++LIS D S
Sbjct: 1210 --RGERVYPHIT-SSQATGRLSTTNPGMTVFGSRDERLIRQREMIVADSADEELISVDLS 1266

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            QI+ R +A  +       +F    D H  +A  +FG          R  AK +  +  YG
Sbjct: 1267 QIDARCMAAGSGDAAYAALFAPGRDAHTEMAIRVFG------DAARRSDAKALGHAANYG 1320

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            + P   A    I   EA + + R    FP +  + +  +   +  G++ T FGRR+  D 
Sbjct: 1321 MGPKSFAAHAGISEVEAKEQLDRLHFEFPQLEAFKDHLRKHAKALGWIATGFGRRVAVD- 1379

Query: 872  INSPKSSIRNINERAAINAPI---QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
                         +A   AP    QG+A D+    ++++       ++   + + +HDE+
Sbjct: 1380 -----------RAKAYTQAPAAYGQGTARDVFLEGVLNLPA-----EVLEMVRIFVHDEI 1423

Query: 929  VFEVPEEEITTASQIIVHSMEKACLP-KINLRVPL 962
            V  VP E      Q ++ + +   LP K ++ VP+
Sbjct: 1424 VLSVPRERAEDIKQTVMDAFKAVTLPCKGDVDVPV 1458


>gi|195651987|gb|ACG45461.1| DNA polymerase I [Zea mays]
          Length = 346

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 14/195 (7%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R  + P YKA+R +          +V +  Q   +  + + G+EADD++AT T    ++
Sbjct: 123 YRRRLLPSYKAHRAR-GVGTGADTRVVDVLRQC-NVAVVRVDGYEADDVVATLTEQVLQK 180

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTG 187
           G+ V I S DKD  QL+S    L   + E        + H + ++   P   + L+   G
Sbjct: 181 GYRVAIASPDKDFKQLISDDVQLVVPIPEIGRWSFYTLRHYVAQYKCDPTADLSLRCFMG 240

Query: 188 DSIDNIPGI----PGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAETA 240
           D  D +PGI    PG G KTA  LLQ++G+LEN L+N + I+   R   ++ + ++A+  
Sbjct: 241 DEADGVPGIQHLVPGFGRKTAVKLLQKHGSLEN-LLNTAAIRTVGRGYAQDALTKHADYL 299

Query: 241 RLSRKLVMLRTDVPI 255
           R + +++ L+ DV +
Sbjct: 300 RKNYQVLSLKRDVNV 314


>gi|326567456|gb|EGE17571.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 835

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 110/522 (21%), Positives = 221/522 (42%), Gaps = 72/522 (13%)

Query: 453 LKKFFENEHFLKIGHNIKYD--KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           LK+FFE+   + I HN  +D   ++ H +  + R F+ ++   + +   R+  D   IA 
Sbjct: 219 LKRFFESYSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTM--CRNIEDTKIIAY 276

Query: 511 KWLSYTRKEILKSRKSS--------IPIDKISD---SQVQEHAIENSNVILQLWLLLRPK 559
              + T+  IL  ++ S        I +  + +   + V E+ ++++     ++   +PK
Sbjct: 277 LATNNTQGNILGLKELSHEFVGNYAIDVKHVLNHPLATVLEYNLKDTLATYWVFNKYKPK 336

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQID---------------QDLLKQVSA---- 600
           ++ +    +Y+ +  P I  + Q+E+ G+ ++                D L+Q+ A    
Sbjct: 337 MLSDNQDSIYKTIMLPSIKTIIQIELHGMPMNMDKVVIVKKQLQNQANDALEQIYASEHV 396

Query: 601 -------------EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
                        +I+  L + +  +  +   +F  +S   L  +L+  L  P    T  
Sbjct: 397 KAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSTAHLAILLYDYLGLPILDYTPN 456

Query: 648 GQWKTTAQDLEQI--NCGDNPIIK---NILEWRQLSKIKSTYADSLPNHINKRT-QRVHT 701
            Q    A  +E++  +  D+ II     +LE+ ++ KI ST+  +      K     +H 
Sbjct: 457 KQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQKDDWHYLHG 516

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            ++L  T++ RL+S  PNLQ +P  +  G+ I++ F +P     + AD++ +E RI   +
Sbjct: 517 SFNLGGTLSNRLSSSNPNLQQLPSGSTYGKTIKQCFQAPDDWLFVGADFNALEDRINTLL 576

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFG------VN-------IEKVSPQMRRHAKTINFSI 808
            K     +++ +  D H   A   F       +N       I+   P++R+ +K  +F++
Sbjct: 577 TKDPNKQKIWIDGYDAHCFRAYYYFANQMPDIINTKESINSIKHKYPELRQESKAPSFAL 636

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            YG   F L        S+A +    Y   +     + ++      + GY++  FG RI 
Sbjct: 637 QYGGQYFTLMKNCGFSESKAKEIETNYHKMYEVSDAWTQRKLEQCAKQGYIDVAFGLRIR 696

Query: 869 YDEI-----NSPKSSIRNINERAAINAPIQG-SAADITRRAM 904
              +     N+ K+      E  ++   I G S   +T RA+
Sbjct: 697 TPVVGKTVLNTSKTPYLASAEARSVGNAISGQSYCQLTNRAI 738


>gi|296131039|ref|YP_003638289.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
 gi|296022854|gb|ADG76090.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
          Length = 393

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 27/284 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L  VDG+S I+R+F+A      R  DG P  A+ G    +   +     +++     V F
Sbjct: 50  LLAVDGNSLIHRSFHALAGSQLRTRDGRPTWAVKGALAQVLGAVDRVGADAVV----VGF 105

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A   R + +P YKA+R + P  L+ QL L      + G+  +   G EADD++A+  
Sbjct: 106 DDAAGNVRRDAHPHYKAHRAEKPGDLVTQLALAVDVFWSAGLHVVIPDGLEADDVLASAA 165

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK------WGIPPEKM 179
             A   G+   + ++D+D   LV  TT     +    ++   V+         GI P + 
Sbjct: 166 SAATAAGWHTVVCTSDRDAFALVDETTSALRIIN-GGVEASPVLTPERLRILTGIDPWQY 224

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN-----ASRIKQKKRRENIL 234
               A+ GD+ DN+ GI G+G KTA  LL  +G+++    +      +R+ +      + 
Sbjct: 225 RQYAAMRGDASDNLTGIRGVGPKTAVALLNAFGSVDAAFADVDTNGGARVAEVVGTACVR 284

Query: 235 EYAETARLSR-----KLVMLRTDVPITIPLEHLILEDCNGPRLI 273
           + A+    +R     +L+ +RTD+ +      + L   +GP L+
Sbjct: 285 KLADPEGRARFWENVELMTMRTDLDL-----EMDLTAASGPGLL 323


>gi|159476518|ref|XP_001696358.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
 gi|158282583|gb|EDP08335.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
          Length = 894

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 34/175 (19%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R AF++P  + L+SADYSQIELR+LAH++                              +
Sbjct: 616 RAAFVAPAGRLLVSADYSQIELRLLAHLS------------------------------I 645

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLR---IPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           S + R  AK I ++IIYG+SP  LA  L    +   EA      +   F G+  +I  + 
Sbjct: 646 SSRDREQAKRIIYAIIYGMSPQGLAQALSDHGVEVKEATALRSSFLRHFAGVQSFITSSL 705

Query: 851 NFVRQNGYVET-IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +  R++G++ T + GRR     + S    +R   ER  +N+ +QGSAAD+ + AM
Sbjct: 706 HHARRHGFITTGLLGRRRPISGLASNDVRLRAEAERKVVNSIVQGSAADLIKMAM 760


>gi|168705115|ref|ZP_02737392.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 125

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 9/124 (7%)

Query: 855 QNGYVETIFGRRIHYD----EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           + G ++TI GR   ++    ++NS     R +  R AIN  IQGSAAD+ ++AM+  H  
Sbjct: 1   ERGRLQTILGRWRAFNLDGRDVNSTYQG-RTMAAREAINYEIQGSAADLIKKAMLGAHAR 59

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           +   +L  +MLL +HDELVFE P  E+   ++++   M  A    I L VPLKV++    
Sbjct: 60  MAAQRLHARMLLTVHDELVFEAPPAEVEPLARLVREEMTSA----IKLDVPLKVDVAAGP 115

Query: 971 NWQE 974
           NW E
Sbjct: 116 NWLE 119


>gi|302808435|ref|XP_002985912.1| hypothetical protein SELMODRAFT_46231 [Selaginella moellendorffii]
 gi|300146419|gb|EFJ13089.1| hypothetical protein SELMODRAFT_46231 [Selaginella moellendorffii]
          Length = 273

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 17/211 (8%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG----------IPAIEIQGFEADDII 121
           +R +I P YKA R K  + L P     R    +F           IP +++   EADD+I
Sbjct: 56  YRRKILPSYKAGRRKF-KPLDPSFKWTRGLEASFSRFQCFLRQCNIPVVKVDNVEADDVI 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPE 177
           AT             I S DKD  QLVS    L     D  +     ++  +++    P 
Sbjct: 115 ATLARQVNDRSLKAVIASPDKDFKQLVSENVELLIPFADLRRWSFYTVKDYVEQHKCEPG 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILE 235
             + L+ L GD+ D +PG+PG G KTA  L++++G+LEN+L  A+   + +   ++ + E
Sbjct: 175 IELGLRCLLGDAADGVPGVPGFGRKTALKLMRKHGSLENLLSAAAFRTVGKPYIQDALKE 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILED 266
           ++     + +++ LR D+ + +P+E  +  D
Sbjct: 235 HSVLLEKNLEVLSLRRDINVELPVEWCLSRD 265


>gi|219885673|gb|ACL53211.1| unknown [Zea mays]
 gi|238009624|gb|ACR35847.1| unknown [Zea mays]
          Length = 352

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 14/195 (7%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R  + P YKA+R +          +V +  Q   +  + + G+EADD++AT T    ++
Sbjct: 129 YRRRLLPSYKAHRAR-GVGTGADTRVVDVLRQC-NVAVVRVDGYEADDVVATLTEQVLQK 186

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTG 187
           G+ V I S DKD  QL+S    L   + E        + H + ++   P   + L+   G
Sbjct: 187 GYRVAIASPDKDFKQLISDDVQLVVPIPEIGRWSFYTLRHYVAQYKCDPTADLSLRCFMG 246

Query: 188 DSIDNIPGI----PGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAETA 240
           D  D +PGI    PG G KTA  LLQ++G+LEN L+N + I+   R   ++ + ++A+  
Sbjct: 247 DEADGVPGIQHLVPGFGRKTAVKLLQKHGSLEN-LLNTAAIRTVGRGYAQDALTKHADYL 305

Query: 241 RLSRKLVMLRTDVPI 255
           R + +++ L+ DV +
Sbjct: 306 RKNYQVLSLKRDVNV 320


>gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
 gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
          Length = 608

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVH   +     TGR++   P LQ +  K D   ++R  F + P   LIS D+SQ+E+R+
Sbjct: 348 RVHPQINTLRAKTGRMSITGPALQTLK-KGD--PRLRHCFQADPGHVLISCDFSQVEVRV 404

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            A +++   L  V  + +DIH   A  +FG    K     R  AK   F  IYG     L
Sbjct: 405 TAALSRDPALTDVLASGVDIHDATARLLFGDGFTK---DQRTLAKRATFGTIYGGGARAL 461

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
                     A D I R+   +PG+  Y  +  +    +  V T  GRRI  D       
Sbjct: 462 MNATGATHQVATDVITRWRAAYPGVAAYSARLAD----HNPVITGSGRRIPADP------ 511

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
               +   A  N  +Q +A D+    + +VH  +  H L   + L +HDE++  VP +  
Sbjct: 512 ----LRPYANANYAVQSTARDLL---VTAVHTLVTRHGLHDALWLFVHDEVIVHVPTDR- 563

Query: 938 TTASQI 943
             A+Q+
Sbjct: 564 --AAQV 567


>gi|47076970|dbj|BAD18421.1| unnamed protein product [Homo sapiens]
          Length = 312

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 2/169 (1%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
           R  F+S      ++AD+SQIELRIL H++    L ++F+ S   D+   + ++   V +E
Sbjct: 140 RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVE 199

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + ++++YG    RLA  L +P  EAA +++ +  ++  I ++      
Sbjct: 200 QVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIA 259

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
              Q G V +I GRR     I++    +R   ER A+N  +Q  +  + 
Sbjct: 260 QCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQAQSQHLC 308



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  ++  L+ P+I +++ ME   IQ++++ +++ SA +   L  LE+  + ++GE+F ++
Sbjct: 11  LWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLIT 70

Query: 625 SPKQLGDILFTKLKF 639
           S  QL +ILF KLK 
Sbjct: 71  SNNQLREILFGKLKL 85


>gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
 gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
          Length = 640

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 186/439 (42%), Gaps = 75/439 (17%)

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNL------LSLEENIYDLSGEKFNLSSPKQLGDIL 633
           V+   I GI+ID++ +++     S++       L L+E I+         +S K+L D+L
Sbjct: 207 VANSWIMGIRIDREQVRRNDKFFSESKTAIAKKLGLDEGIF---------TSTKRLPDLL 257

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLE----QINCGDNPIIKN----ILEWRQLSKIKSTYA 685
           F +   P  +KT +G     A  L+    Q+N   N  + +    ILE +Q S + S Y 
Sbjct: 258 FKEWLLPVISKTPSGNPSCNADTLKLLQYQLNEAGNTEMADKLGLILEAKQYSTLHSKYV 317

Query: 686 DSLPNHINKRTQRVHTFYS--LASTMTGRLASL---------EPNLQNIPIKTDLG---- 730
            S+   + + T   + + S  +  T TGR             + N +    K+ +     
Sbjct: 318 KSMIEAL-EHTGDGYIYASPRIFGTYTGRFTYSSTTNGKDYEDDNAKTKKFKSAIAVHQI 376

Query: 731 ----QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
               + +R++ I+P   ++  AD S  E R++A  +K   + ++F   ++ H M  A I 
Sbjct: 377 PRRDKMVRKSMIAPEGYEIYEADASGQESRLMALRSKDPVMIEIFSKDMNFHSMTGASII 436

Query: 787 GVNIEKVS-------------PQMRRHAKTINFSIIYGISPFRLATQLRIPRS-----EA 828
           G +                   + R+  K  N S  Y I    L+ +  +        + 
Sbjct: 437 GEDYSDFQVKYKAEGDEGGYYTEQRQLGKLTNLSCNYRIGGKALSQKAFLDYDTFLTVQT 496

Query: 829 ADYIKRYFHR-FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
             ++ + F+R + G+ +Y E      R+ GY ET  GRR    + +S K     I E +A
Sbjct: 497 GLFLVQTFNRTYKGVPQYWEDVVWESRKQGYTETFGGRRYKLTDWHSHKW----ITESSA 552

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           IN PIQG+ AD+     I++ ++ E    A   LL +HD   F VP        + + H+
Sbjct: 553 INVPIQGAGADMKE---IAIKETFEKVPEAL-FLLDLHDANFFYVPSVNAVDLHEKLDHT 608

Query: 948 M-----EKACLPKINLRVP 961
           +     EK    K+ + +P
Sbjct: 609 LNTIDYEKYWGFKLEIELP 627


>gi|119952216|ref|YP_950517.1| DNAP [Enterobacteria phage N4]
 gi|117650935|gb|ABK54408.1| DNAP [Enterobacteria phage N4]
          Length = 859

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 104/497 (20%), Positives = 210/497 (42%), Gaps = 77/497 (15%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----------------KLVLHRYGISMR 484
           G+      + S L+ FF      ++ HNI +D                + +LH   I +R
Sbjct: 230 GRQVHNMLVRSMLRDFFIKYLNRQMYHNIAFDVYALIYQLFMTDLLDTEGLLHGMSIMLR 289

Query: 485 GFEDIMLMSYVLDSGRSSHDIA--SIAQKWLS-YTRKEILKSRKSSIPIDKISDSQVQEH 541
            ++   L++Y+  +  + + ++    AQ++   Y ++EI         I +I  +++ E+
Sbjct: 290 NWDCTKLITYLATNSCAGNKLSLKDQAQEYAGNYAQEEIND-------ITRIPLAELLEY 342

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            + +      ++      L+ ++ L VY  + KP  + + QM++TG+ I+   +  V   
Sbjct: 343 NLVDGLCTWYVYEKHWDTLVNDQQLDVYTNIFKPACEDIIQMQLTGMPINMKTVLGVEEA 402

Query: 602 ISKNLLSLEENIYDL-------------------------------SGEKFNLSSPKQLG 630
           ++++  +  + I D                                + E+FN +S  QL 
Sbjct: 403 LTQDYNNALKTIADSKVIKDFTRLLNEEWVEKQNQILKKKRVTLADAKEQFNPNSGVQLQ 462

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCGDNPIIK---NILEWRQLSKIKSTYA 685
            +LF  L+ P    T +    T +  L+ +  +  D  I++    +++++ + KI + + 
Sbjct: 463 KLLFEFLELPVLGLTASKLPATGSGILKSLKNHTQDTSILEILDALIDYKAVDKILTAFI 522

Query: 686 DSLPNHINKRTQRVHTF--YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
            +L N         + F   +L  T++GRL+S EPNLQN+P  +   + I++ F +PP  
Sbjct: 523 PALKNARQGPDGWHYLFGNLNLGGTVSGRLSSSEPNLQNLPSGSRYAKIIKKCFEAPPGW 582

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG------------VN-I 790
                D++ +E RI A   K     +V+ +  D H + A   FG            VN I
Sbjct: 583 IFCGLDFASLEDRISALTTKDPNKLKVYTDGYDGHSLRAYAYFGEMMPDIEDTVESVNSI 642

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++     R+ +K   F++ Y  +   L      P  +A    +RY   +    ++++   
Sbjct: 643 QEKYKAYRQDSKAPTFALTYQGTYITLMKNCGFPEQKARMVEERYHTLYKVSDDWVQAKL 702

Query: 851 NFVRQNGYVETIFGRRI 867
           +   ++GYV   FG R+
Sbjct: 703 DQAAKDGYVTVAFGLRV 719


>gi|326573170|gb|EGE23139.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 835

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 111/522 (21%), Positives = 217/522 (41%), Gaps = 72/522 (13%)

Query: 453 LKKFFENEHFLKIGHNIKYD--KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           LK+FFE+   + I HN  +D   ++ H +  + R F+ ++   + +   R+  D   IA 
Sbjct: 219 LKRFFESYSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTM--CRNIEDTKIIAY 276

Query: 511 KWLSYTRKEILKSRKSS---IPIDKISDSQVQEHAIEN------SNVILQLWLL--LRPK 559
              + T+  IL  ++ S   +    I    V  H +         + +   W+    +PK
Sbjct: 277 LATNNTQGNILGLKELSHEFVGNYAIDVKHVLNHPLATVLEYNLKDTLGTYWVFNKYKPK 336

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQID---------------QDLLKQVSA---- 600
           ++ +    +Y+ +  P I  + Q+E+ G+ ++                D L+Q+ A    
Sbjct: 337 MLSDNQDSIYKTIMLPSIKTIIQIELHGMPMNMDKVVVVKKQLQNQANDALEQIYASEHV 396

Query: 601 -------------EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
                        +I+  L + +  +  +   +F  +S   L  +L+  L  P    T  
Sbjct: 397 KAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSIAHLAILLYDYLGLPILDYTPN 456

Query: 648 GQWKTTAQDLEQI--NCGDNPIIK---NILEWRQLSKIKSTYADSLPNHINKRT-QRVHT 701
            Q    A  +E++  +  D+ II     +LE+ ++ KI ST+  +      K     +H 
Sbjct: 457 KQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQKDDWHYLHG 516

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            ++L  T++ RL+S  PNLQ +P  +  G+ I++ F +P     + AD++ +E RI   +
Sbjct: 517 SFNLGGTLSNRLSSSNPNLQQLPSGSTFGKTIKQCFQAPDDWLFVGADFNALEDRINTLL 576

Query: 762 AKITPLYQVFENSLDIHRMVAAEIF------------GVN-IEKVSPQMRRHAKTINFSI 808
            K     +++ +  D H   A   F             +N I+   P++R+ +K  +F++
Sbjct: 577 TKDPNKQKIWIDGYDAHCFRAYYYFVNQMPDIINTKESINSIKHKYPELRQESKAPSFAL 636

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            YG   F L        S+A +    Y   +   + + ++      + GY++  FG RI 
Sbjct: 637 QYGGQYFTLMKNCGFSESKAKEIETNYHKMYEVSNAWTQRKLEQCAKQGYIDVAFGLRIR 696

Query: 869 YDEI-----NSPKSSIRNINERAAINAPIQG-SAADITRRAM 904
              +     N+ K+      E  ++   I G S   +T RA+
Sbjct: 697 TPVVGKTVLNTSKTPYLASAEARSVGNAISGQSYCQLTNRAI 738


>gi|302808221|ref|XP_002985805.1| hypothetical protein SELMODRAFT_122968 [Selaginella moellendorffii]
 gi|300146312|gb|EFJ12982.1| hypothetical protein SELMODRAFT_122968 [Selaginella moellendorffii]
          Length = 324

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 17/211 (8%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG----------IPAIEIQGFEADDII 121
           +R +I P YKA R K  + L P     R    +F           IP +++   EADD+I
Sbjct: 94  YRRKILPAYKAGRRKF-KPLDPSFKWTRGLEASFSRFQCFLRQCNIPVVKVDNAEADDVI 152

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPE 177
           AT             I S DKD  QLVS    L     D  +     ++  +++    P 
Sbjct: 153 ATLARQVNDRSLKAVIASPDKDFKQLVSENVELLIPFADLRRWSFYTVKDYVEQHKCEPG 212

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILE 235
             + L+ L GD+ D +PG+PG G KTA  L++++G+LEN+L  A+   + +   ++ + E
Sbjct: 213 IELGLRCLLGDAADGVPGVPGFGRKTALKLMRKHGSLENLLSAAAFRTVGKPYIQDALKE 272

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILED 266
           ++     + +++ LR D+ + +P+E  +  D
Sbjct: 273 HSVLLEKNLEVLSLRRDINVELPVEWCLSRD 303


>gi|302806216|ref|XP_002984858.1| hypothetical protein SELMODRAFT_46232 [Selaginella moellendorffii]
 gi|300147444|gb|EFJ14108.1| hypothetical protein SELMODRAFT_46232 [Selaginella moellendorffii]
          Length = 273

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 17/211 (8%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG----------IPAIEIQGFEADDII 121
           +R +I P YKA R K  + L P     R    +F           IP +++   EADD+I
Sbjct: 56  YRRKILPSYKAGRRKF-KPLDPSFKWTRGLEASFSRFQCFLRQCNIPVVKVDNAEADDVI 114

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPE 177
           AT             I S DKD  QLVS    L     D  +     ++  +++    P 
Sbjct: 115 ATLARQVNDRSLKAVIASPDKDFKQLVSENVELLIPFADLRRWSFYTVKDYVEQHKCEPV 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILE 235
             + L+ L GD+ D +PG+PG G KTA  L++++G+LEN+L  A+   + +   ++ + E
Sbjct: 175 IELGLRCLLGDAADGVPGVPGFGRKTALKLMRKHGSLENLLSAAAIRTVGKPYIQDALKE 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILED 266
           ++     + +++ LR D+ + +P+E  +  D
Sbjct: 235 HSVLLEKNLEVLSLRRDINVELPVEWCLSRD 265


>gi|109392407|ref|YP_654951.1| gp54 [Mycobacterium phage Cooper]
 gi|88910241|gb|ABD58171.1| gp54 [Mycobacterium phage Cooper]
          Length = 617

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 163/381 (42%), Gaps = 50/381 (13%)

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS--AEISKNLLSLEENIYDLSGE 619
            E+LL   E + + M+    +    G+ +D+  L + +   +I +NL   E   + L G 
Sbjct: 244 AEELLATQETVHRVML----RRSAVGLAVDRAYLDRYAEQVDIDRNLAIAELAAHGLEG- 298

Query: 620 KFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
                   +L + L  + + P+   +T T + + T  DL+ +   D+P+     +  Q+ 
Sbjct: 299 --GSGKGAKLVEYLAERGELPANWPRTPTRKLRATKADLDGL---DHPLAAAQRKLAQID 353

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYS-LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           K+   Y + +    +  T R H     L ++ TGR+A   P LQ  P          RA 
Sbjct: 354 KVMG-YLEKVDRQASV-TGRCHPQVGVLGASATGRMAYGSPELQQFPADA-------RAI 404

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
           I+   + L S D+SQIE   +A +AK       FE   D++           I++ +   
Sbjct: 405 ITDDGQGLTSIDWSQIEPVTMALMAKDHEFLAPFEAGEDLYE---------PIQRSAGID 455

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R  AK +    +YG+   +LA Q+      AA   ++ F    G   ++ K +N     G
Sbjct: 456 RPVAKVVLLGTMYGLGIAKLARQIGHTEESAAQIRRQMFEAMKGCERWMRKVQNVAETYG 515

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV-HKSLEDHKL 916
            V T  GR +  D+            E  A+N  IQGSA D+   +++ +  + + DH  
Sbjct: 516 RVVTAGGRILPVDQ----------GYEYKAVNYAIQGSAYDVLAHSIVEMDRRGIGDH-- 563

Query: 917 ATKMLLQIHDELVF--EVPEE 935
              + L +HDELV   EV EE
Sbjct: 564 ---LQLAMHDELVVDTEVAEE 581


>gi|71746478|ref|XP_822294.1| mitochondrial structure specific endonuclease I (SSE-1)
           [Trypanosoma brucei TREU927]
 gi|70831962|gb|EAN77466.1| mitochondrial structure specific endonuclease I (SSE-1), putative
           [Trypanosoma brucei]
 gi|261331952|emb|CBH14945.1| mitochondrial structure specific endonuclease I (SSE-1), putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 295

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 103/199 (51%), Gaps = 21/199 (10%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLV-RLATQAF-GIPA------------IEIQGFEAD 118
           R EIYP YK NR      +  +L ++ ++AT+ F G P             ++    EAD
Sbjct: 89  RREIYPKYKLNREG--REVGEELGVIQKVATKVFLGEPKNTLLIVPHFDSKLKNVNAEAD 146

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT-CLY-DTVKEEKIDIEHVIKKWGIPP 176
           D+I+T     ++      I+S D DL QL+   + C Y D   +  I  + VI++ G+ P
Sbjct: 147 DMISTLAQHTQRIRIPTVIMSHDHDLYQLIDEASRCYYYDIRTKHLISEKGVIERLGVHP 206

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + +   + L GD  DNIPG+ GIG   A  LL++YG+LE +L   ++ KQ     ++L  
Sbjct: 207 KLVRDYKCLAGDPSDNIPGVKGIGKTRALQLLKKYGDLEGVLTKGTK-KQGGVVGDLLRA 265

Query: 237 A-ETARLSRKLVMLRTDVP 254
             E A LSRKLV LR D P
Sbjct: 266 GVEGAELSRKLVELR-DCP 283


>gi|255571798|ref|XP_002526842.1| DNA polymerase I, putative [Ricinus communis]
 gi|223533846|gb|EEF35577.1| DNA polymerase I, putative [Ricinus communis]
          Length = 411

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 10/154 (6%)

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---- 162
           +P ++I+G EADD++AT      + G+   + S DKD  QLVS    +   V E K    
Sbjct: 202 VPVVKIEGHEADDVVATLVEQVLQRGYKAVVASPDKDFKQLVSEDVQIVLPVTELKRWSF 261

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENIL 218
             I+H I ++   P   + L+ + GD +D IPGI    PG G KTA  LL+++G+LEN+L
Sbjct: 262 YTIKHYIAQYNCDPCSDLSLRCIMGDEVDGIPGIQSVAPGFGRKTALKLLKKHGSLENLL 321

Query: 219 -INASRIKQKKRRENIL-EYAETARLSRKLVMLR 250
            + A R   K   ++ L ++A+  R + +++ LR
Sbjct: 322 NVAAIRTVGKPYAQDALTKHADYLRRNYEVLALR 355


>gi|322830435|gb|EFZ33458.1| mitochondrial structure specific endonuclease I (SSE-1), putative
           [Trypanosoma cruzi]
          Length = 295

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 20/196 (10%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVR-LATQAFG---------IPAIEIQ----GFEAD 118
           R E+YP YK NR +       +L +++ +A + F          +P ++ +      EAD
Sbjct: 89  RRELYPAYKENRAEREHA--AELSVIKKVAIKVFTGEPKNTLIVLPDLDAKLKDVDAEAD 146

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT-CL-YDTVKEEKIDIEHVIKKWGIPP 176
           DIIAT     ++      ++S D DL QL+     C  YD   +  +  + VI++ G+ P
Sbjct: 147 DIIATLALHNQQLKIPTVVMSHDYDLYQLIDEANKCYHYDIRTKHLVSEKGVIERVGVHP 206

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + +   ++L GDS DNIPG+ GIG   A  LL++YG+LE +L    + KQ     ++L  
Sbjct: 207 KLVRDYKSLAGDSSDNIPGVKGIGKTRALQLLKKYGDLEGVLTKGKK-KQGGHLGDLLRA 265

Query: 237 -AETARLSRKLVMLRT 251
            A  A LSRKLV LR+
Sbjct: 266 GAADAELSRKLVELRS 281


>gi|194100568|ref|YP_002003893.1| gp54 [Mycobacterium phage Nigel]
 gi|192758284|gb|ACF05057.1| gp54 [Mycobacterium phage Nigel]
          Length = 618

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 160/381 (41%), Gaps = 50/381 (13%)

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS--AEISKNLLSLEENIYDLSGE 619
            E+LL   E + + M+    +    G+ +D+  L + +   ++ +NL   E   + L G 
Sbjct: 245 AEQLLWTQETVHRVML----RRSAVGLAVDRAYLDRYAEQVDVDRNLAVAELAAHGLEGG 300

Query: 620 KFNLSSPKQLGDILFTKLKFPS-GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
               +   +L + L+ + + P    +T T + + T  DLE +   D+P+     +   + 
Sbjct: 301 SGKAA---KLVEYLYQRGELPEPWPRTPTKKLRATKDDLEGL---DHPLAAAQRKLATIE 354

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYS-LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           K+    A    +     T R H     L ++ TGR+A   P LQ  P          RA 
Sbjct: 355 KVMGYLAKV--DRQASVTGRCHPQVGVLGASATGRMAYGSPELQQFPADA-------RAI 405

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
           I+   + L S D+SQIE   +A +AK       FE   D++           I++ +   
Sbjct: 406 ITDDGQGLTSIDWSQIEPVTMALMAKDHDFLAPFEAGEDLYE---------PIQRSAGID 456

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R  AK +    +YG+   +LA Q+      AA   ++ F    G   ++ K +N     G
Sbjct: 457 RPVAKVVLLGTMYGLGIAKLARQIGHTEESAAQIRRQMFEAMKGCERWMRKVQNVAETYG 516

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV-HKSLEDHKL 916
            V T  GR +  D             E  A+N  IQGSA D+   +++ +  + + DH  
Sbjct: 517 RVVTAGGRILPVDP----------GYEYKAVNYAIQGSAYDVLANSIVEMDRRGISDH-- 564

Query: 917 ATKMLLQIHDELVF--EVPEE 935
              + L +HDELV   EV EE
Sbjct: 565 ---LQLAMHDELVVDTEVAEE 582


>gi|54025129|ref|YP_119371.1| putative 5'-3' exonuclease [Nocardia farcinica IFM 10152]
 gi|54016637|dbj|BAD58007.1| putative 5'-3' exonuclease [Nocardia farcinica IFM 10152]
          Length = 326

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 113/232 (48%), Gaps = 26/232 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RAF+A P      DG  VNA+ GF +M+  L+       +    A+  D
Sbjct: 16  LLLLDGASLWFRAFHAIPDKLTAPDGRSVNAVRGFTDMVASLITRFGPGRLV--VALDLD 73

Query: 67  YPAVTFRNEIYPDYKANR--PK-------IPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           +   TFR E+ P YK +R  P        +P+ L PQ+ ++     A GI      G EA
Sbjct: 74  W-RPTFRVELVPSYKTHRLDPSGDPTAELVPDRLTPQVDMILDVLAAAGIATGGAAGLEA 132

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLV-----SPTTCLY---DTVKEEKIDIEHVI 169
           DD++ T       +   V ++S D+DL+QLV      P    Y      K E      V 
Sbjct: 133 DDVLGTLADRERDD--DVVVVSGDRDLLQLVRDDPAPPVRVFYAGRGLAKAELFGPAEVS 190

Query: 170 KKWGIPPEKM----VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
            K+G+P E        +  L GD+ D +PG+PGIG K+AA L+  +G+LE +
Sbjct: 191 AKYGVPLENAGPAYADMATLRGDASDGLPGVPGIGDKSAATLISRFGSLEAL 242


>gi|226529211|ref|NP_001146806.1| hypothetical protein LOC100280411 [Zea mays]
 gi|219888829|gb|ACL54789.1| unknown [Zea mays]
          Length = 361

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 23/204 (11%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R  + P YKA+R +          +V +  Q   +  + + G+EADD++AT T    ++
Sbjct: 129 YRRRLLPSYKAHRAR-GVGTGADTRVVDVLRQC-NVAVVRVDGYEADDVVATLTEQVLQK 186

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE---------K 178
           G+ V I S DKD  QL+S    L   + E        + H + ++   P          K
Sbjct: 187 GYRVAIASPDKDFKQLISDDVQLVVPIPEIGRWSFYTLRHYVAQYKCDPTADLSLIMNWK 246

Query: 179 MVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINASRIKQKKR---RE 231
           + C     GD  D +PGI    PG G KTA  LLQ++G+LEN L+N + I+   R   ++
Sbjct: 247 LCCTGCFMGDEADGVPGIQHLVPGFGRKTAVKLLQKHGSLEN-LLNTAAIRTVGRGYAQD 305

Query: 232 NILEYAETARLSRKLVMLRTDVPI 255
            + ++A+  R + +++ L+ DV +
Sbjct: 306 ALTKHADYLRKNYQVLSLKRDVNV 329


>gi|12323855|gb|AAG51896.1|AC023913_4 DNA polymerase type I, putative; 54894-56354 [Arabidopsis thaliana]
          Length = 343

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 18/221 (8%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLP--LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           R E+ P YKA+R         + P   V    +   +P     G EADD++AT    A +
Sbjct: 125 RRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPV----GHEADDVVATLMEQAVQ 180

Query: 131 EGFAVTIISTDKDLMQLVSPTT----CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            G+   I S DKD  QL+S        L D  +     ++H   ++   P+  +  + + 
Sbjct: 181 RGYRAVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNCDPQSDLSFRCIM 240

Query: 187 GDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAETA 240
           GD +D +PGI    P  G KTA  L++++G+LE++L  A+   + +   +E + +YA+  
Sbjct: 241 GDEVDGVPGIQHMVPAFGRKTAMKLVRKHGSLESLLSAAAVRTVGRPYAQEALTKYADYL 300

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPR--LISFLKAL 279
           R + +++ L  DV + I  E L+  D +     L SF   L
Sbjct: 301 RRNYQVLALNRDVRVQIQNEWLMERDTSNDSEVLSSFFSTL 341


>gi|302845441|ref|XP_002954259.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
 gi|300260464|gb|EFJ44683.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
          Length = 689

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 110/258 (42%), Gaps = 59/258 (22%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-------------DIHRM 780
           R AF++PP + L++ADYSQIELR+LAH++    L ++ +  +             D  R 
Sbjct: 460 RNAFVAPPGRLLVAADYSQIELRLLAHMSGDLRLQELLKRGVEQSEGRGGGGGGTDAFRH 519

Query: 781 VAAEIF--GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR---IPRSEAADYIKRY 835
           +AA     G     VS + R   K + + IIYG++   LA QL    +   EA      +
Sbjct: 520 IAASWLRPGTAPADVSSRDREQVKRVVYGIIYGMTAQGLAQQLAEYGVGLEEATALRTSF 579

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVET-IFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
              F G+  +I  +    R++GY+ T + GRR     +NS  S  R +N           
Sbjct: 580 LRHFAGVQAFITSSLYHARRHGYITTGLLGRRRPIAGVNS--SDPRVVNS---------- 627

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
                                     ++QIHDELVFEV +       +++V   E  C  
Sbjct: 628 --------------------------IVQIHDELVFEV-DSRPEVVRRLVVAVREIMC-G 659

Query: 955 KINLRVPLKVNIKVSNNW 972
            ++L VPL V +     W
Sbjct: 660 VVSLNVPLLVKVAAGPTW 677


>gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173]
          Length = 169

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 25/187 (13%)

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP      + +RR F +      + AD+SQIELRI A       + + F+   D
Sbjct: 1   DPNLQNIP------KDLRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRD 54

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT-----QLRIPRSEAADY 831
           +HR  A+ + G   E ++ + R+ AK +NF +IYGIS   L+       + +P  EA   
Sbjct: 55  LHRYTASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAI 114

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYV--ETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +R+F  F G  ++  K K  +++ G     T+ GR   Y     P           A+N
Sbjct: 115 RERFFSYFEGFKDWHNKVKEELKKTGKSSGHTLLGR--SYVAHTFPD----------AVN 162

Query: 890 APIQGSA 896
            PIQG+ 
Sbjct: 163 YPIQGTG 169


>gi|291529772|emb|CBK95358.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Eubacterium rectale M104/1]
          Length = 354

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 117/287 (40%), Gaps = 66/287 (22%)

Query: 7   LFLVDGSSFIYRAF-------------------YATPLLSRKHDGLPVNAIAGFCNMLWK 47
             L+DGSS +   F                   YA  +L    +G+  N +      +  
Sbjct: 2   FLLIDGSSLLTTNFMGNLPPEIKFCKDDDKYDRYADKIL-HTSNGIYTNGVYSTLMDIMN 60

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +++  R E    + AV FD    TFR ++YP+YKA R   PE L  Q   ++      GI
Sbjct: 61  IIRIHRPE----YMAVAFDKTRDTFRRKLYPEYKAQRKPKPECLQQQFTTLKAILNELGI 116

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEE 161
             +E   +EADD+I +     E     + I++ D D +QL +    ++      DT   E
Sbjct: 117 MVLESGDYEADDLIGSVASHFENPFMKIKILTKDHDYLQLKTDNIDVWIMQTSADTA--E 174

Query: 162 KIDIEHVIKK---W-------------------------------GIPPEKMVCLQALTG 187
           ++ I++ I+K   W                               G+    +  L+ L G
Sbjct: 175 RMRIKYNIRKVEEWQYVAARKSYSEDDCLPCKAINFTDDIIKGEHGVDSMLIADLKGLMG 234

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           DS DNIPG+ G+G K A  LL  YG++ENI       +    +E +L
Sbjct: 235 DSSDNIPGVRGLGPKAAVPLLDFYGSIENIYAAIDACENDAAKEKML 281


>gi|77407374|ref|ZP_00784270.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77174018|gb|EAO76991.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 91

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 58/91 (63%), Gaps = 4/91 (4%)

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN+PIQGSAADI + AMI++ + L+     +KMLLQ+HDE+V EVP EEI    ++
Sbjct: 3   ERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIREL 62

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +  +ME A    I+L VPL  +      W E
Sbjct: 63  VTKTMESA----ISLSVPLIADENAGETWYE 89


>gi|71424184|ref|XP_812706.1| mitochondrial structure specific endonuclease I (SSE-1)
           [Trypanosoma cruzi strain CL Brener]
 gi|70877520|gb|EAN90855.1| mitochondrial structure specific endonuclease I (SSE-1), putative
           [Trypanosoma cruzi]
          Length = 295

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 20/196 (10%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVR-LATQAFG---------IPAIEIQ----GFEAD 118
           R E+YP YK NR +       +L +++ +A + F          +P ++ +      EAD
Sbjct: 89  RRELYPAYKENRAEREHA--AELSVIKKVAIKVFTGEPKNTLIVLPDLDAKLKDVDAEAD 146

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT-CL-YDTVKEEKIDIEHVIKKWGIPP 176
           DIIAT     ++      ++S D DL QL+     C  YD   +  +  + VI++ G+ P
Sbjct: 147 DIIATLALHNQQLKIPTVVMSHDYDLYQLIDEANKCYHYDIRTKHLVSEKGVIERVGVHP 206

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + +   ++L GDS DNIPG+ GIG   A  LL++YG+LE +L    + KQ     ++L  
Sbjct: 207 KLVRDYKSLAGDSSDNIPGVKGIGKTRALQLLKKYGDLEGVLTKGKK-KQGGHLGDLLRA 265

Query: 237 -AETARLSRKLVMLRT 251
            A  A LSRKLV LR+
Sbjct: 266 GAADAELSRKLVELRS 281


>gi|308516943|emb|CBW47048.1| N4 DNA polymerase-like protein [Roseovarius sp. 217 phage 1]
          Length = 874

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 138/611 (22%), Positives = 233/611 (38%), Gaps = 123/611 (20%)

Query: 443 NTLTKE----ILSYLKKFFENEHFLKIG-----HNIKYDKLVL----------------H 477
           NT TKE    I   LK FF    F + G     HNI YD  VL                 
Sbjct: 216 NTRTKEEDPVIRQALKTFFY--RFRESGRKMIYHNICYDAYVLIYQLFMDHILDQEGLLE 273

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKIS 534
              + +  FED  +++Y+  +  + +++   AQ      +Y  +EI     + I +DK+ 
Sbjct: 274 GLDVMLENFEDTQIITYLATNSCAGNELGLKAQAQEFAGNYAVEEI--KDITLIDLDKLL 331

Query: 535 DSQVQEHAIENSNVILQLWLLLRPK---LIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  + +         L  W +       +I +  L  YE   + ++D++ QM++TG+ ++
Sbjct: 332 EYNLVDG--------LSTWYVYNKHYQTMITDLQLGTYENFKEWVVDII-QMQLTGLPVN 382

Query: 592 QD----LLKQVSAEISKNL-------------LSLEENIY---------------DLSGE 619
            D    L K ++AE   N+               LEE                  DL   
Sbjct: 383 MDKVVALDKLLTAESEHNIWKMMQTKIVQGFQYQLEEEALAKKNAKLKTKTVTRKDLGLT 442

Query: 620 K-----FNLSSPKQLGDILFTK--LKFPSGAKTKTGQWKTTAQDLEQ-----INCGDNPI 667
           K     +N  S  QL  +L++K  L  P    T +G   T A  LE+     I+      
Sbjct: 443 KDLEVAYNPGSAPQLQRLLYSKEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKDF 502

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRT-----QRVHTFYSLASTMTGRLASLEPNLQN 722
           +K +LE++  + I ST+   LP  +           +   + L  T++GRL+S  PNLQN
Sbjct: 503 LKILLEYKASAIILSTF---LPAFLKAHPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQN 559

Query: 723 IP------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           IP      +K+ L + I+  F +PP    +  D+  +E RI A   K     +V+ +  D
Sbjct: 560 IPSSAGGPLKSRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYD 619

Query: 777 IHRMVAAEIFGVNIEKVSPQ--------------MRRHAKTINFSIIYGISPFRLATQLR 822
            H + A   FG  +  + P               +R+ +K   F++ Y  +   L     
Sbjct: 620 GHSLRAYGYFGDQMPDIDPSSVESINSIGKKYKPLRQESKAPTFALTYQGTYHTLMQNCG 679

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
             + +A     +Y   +    +Y+ +       +GY+   FG R+    +          
Sbjct: 680 FSKEKAQMIENKYRQMYSVSIDYVNEKLEQATHDGYITVAFGLRVRTPLLVQTILGTNKT 739

Query: 883 NERAAINAPIQGSAAD-----ITRRAMISVHKSLE--DHKLATKMLLQIHDELVFEVPEE 935
            + AA      G+A       +  RA  +  K +    H+L  K    IHD   + V + 
Sbjct: 740 PKEAAAEGRTAGNAMGQSYCMLNSRAASAFMKKVRRSSHRLDIKPCAHIHDAQYYLVRDG 799

Query: 936 EITTASQIIVH 946
              +   I  H
Sbjct: 800 AFDSLVYINTH 810


>gi|237651508|ref|YP_002898979.1| DNA polymerase [Roseophage EE36P1]
 gi|220898140|gb|ACL81397.1| N4 DNA pol-like protein [Sulfitobacter phage EE36phi1]
          Length = 876

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 119/563 (21%), Positives = 212/563 (37%), Gaps = 105/563 (18%)

Query: 465 IGHNIKYDKLVL----------------HRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           I HNI YD  VL                    + +  +E   L++Y+  +  + +++   
Sbjct: 246 IYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENWECTQLITYLATNSCAGNELGLK 305

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISD-SQVQEHAIENSNVI--LQLWLLLRPK---LIV 562
           AQ           +    +  ++ I D +Q++   +   N++  L  W +       +I 
Sbjct: 306 AQA----------QEFAGNYAVEDIQDITQIELAKLLEYNLVDGLSTWYVYNKHYQTMIN 355

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQD----LLKQVSAEISKNLLSLEEN------ 612
           ++   +Y  L K  +  + QM++TG+ ++ D    L  Q+ AE   N+  + +       
Sbjct: 356 DQQYEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKLNNQLGAESEHNVWKMMQTKIVQGF 415

Query: 613 IYDLSGEK---------------------------FNLSSPKQLGDILFTK--LKFPSGA 643
           +Y L  +                            FN  S  QL  +L++   L  P   
Sbjct: 416 VYQLEEDALKKKNEKLKTKVVTRADLGSTQDLMVAFNPGSAPQLQRLLYSDEFLGLPVLD 475

Query: 644 KTKTGQWKTTAQDLEQ-----INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            T +G   T A  LE+     I+      +  +LE++  + I ST+  +           
Sbjct: 476 LTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEYKASAIILSTFLPAFLKACPGPDGW 535

Query: 699 VHTF--YSLASTMTGRLASLEPNLQNIP------IKTDLGQKIRRAFISPPTKKLISADY 750
            + F  + L  T++GRL+S  PNLQNIP      +K+ L + I+  F +PP    +  D+
Sbjct: 536 HYLFGNFRLGGTLSGRLSSNNPNLQNIPSSAGGPLKSRLAKLIKECFEAPPGWLFVGLDF 595

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ-------------- 796
             +E RI A   K     +V+ +  D H + A   FG  +  + P               
Sbjct: 596 DSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYFGDQMPDIDPSSVDSINSIAKKYKP 655

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           +R+ +K   F++ Y  +   L       + +A D   +Y   +    E++EK      ++
Sbjct: 656 LRQESKAPTFALTYQGTFHTLMVNCGFSKEKAQDIENKYKKMYKVSIEFVEKKLEQATRD 715

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD-----ITRRAMISVHKSL 911
           GY+   FG R+    +           + AA      G+A       +  RA     K +
Sbjct: 716 GYITVAFGLRVRTPLLAQTILGTNKTPKEAAAEGRTAGNAMGQSYCMLNSRAASEFMKKV 775

Query: 912 E--DHKLATKMLLQIHDELVFEV 932
               HKL  K    IHD   + V
Sbjct: 776 RVSKHKLDIKPCAHIHDAQYYLV 798


>gi|29366786|ref|NP_813726.1| gp11 [Streptomyces phage phiBT1]
 gi|29243106|emb|CAD80134.1| gp11 [Streptomyces phage phiBT1]
          Length = 624

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 138/323 (42%), Gaps = 42/323 (13%)

Query: 655 QDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGR 712
           +D E+I   + NP+ + +L  ++  K  S+YAD    NH      R+H   +     TGR
Sbjct: 310 RDWERIGAREPNPLAEAVLRAKRAGKWVSSYADKFAENH--DPLGRIHPTINTLQARTGR 367

Query: 713 LA-SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKI------ 764
           ++ S +   Q +P    +   IRRA +   P   + S D+  IE+R+LA +A +      
Sbjct: 368 MSISGDFAAQTLPSSDWM---IRRAVLGDKPDHIVGSVDFQAIEMRVLAALAGVRRMTEG 424

Query: 765 ----TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
                P   V+ +  DIH   A  I G N  K   + R+  K   F  +YG     ++ Q
Sbjct: 425 FLDPDPDPSVYPDGFDIHMYTARLIKGPNATK---RDRKVFKGAGFGKVYGGGIKTISRQ 481

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE-TIFGRRIHYDEINSPKSSI 879
              P  E A  +  Y   FP I     K +   R  G V  T  GR +  D         
Sbjct: 482 TGAPEHEIARAVAEYDRVFPEIKRASSKWQREARARGCVTVTPTGRILPLD--------- 532

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           RN    A +N   Q +A D+  +AMI+    + D  L   M L IHDE+VF  P+ +   
Sbjct: 533 RN-RMYAVVNYKCQSTARDVLGQAMIN----MRDAGLLEYMKLPIHDEIVFSAPKSD--- 584

Query: 940 ASQIIVHSMEKACLPKINLRVPL 962
            +Q I    E+ C+      VP+
Sbjct: 585 -AQDIAREFER-CMTMDLFGVPV 605


>gi|71412751|ref|XP_808546.1| mitochondrial structure specific endonuclease I (SSE-1)
           [Trypanosoma cruzi strain CL Brener]
 gi|70872773|gb|EAN86695.1| mitochondrial structure specific endonuclease I (SSE-1), putative
           [Trypanosoma cruzi]
          Length = 267

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 20/196 (10%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVR-LATQAFG---------IPAIEIQ----GFEAD 118
           R E+YP YK NR +       +L +++ +A + F          +P ++ +      EAD
Sbjct: 61  RRELYPAYKENRAEREHA--AELSVIKKVAIKVFTGEPKNTLIVLPDLDAKLKDVDAEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT-CL-YDTVKEEKIDIEHVIKKWGIPP 176
           DIIAT     ++      ++S D DL QL+     C  YD   +  +  + VI++ G+ P
Sbjct: 119 DIIATLALHNQQLKIPTVVMSHDYDLYQLIDEANKCYHYDIRTKHLVSEKGVIERVGVHP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + +   ++L GDS DNIPG+ GIG   A  LL++YG+LE +L    + KQ     ++L  
Sbjct: 179 KLVRDYKSLAGDSSDNIPGVKGIGKTRALQLLKKYGDLEGVLTKGKK-KQGGHLGDLLRA 237

Query: 237 -AETARLSRKLVMLRT 251
            A  A LSRKLV LR+
Sbjct: 238 GAADAELSRKLVELRS 253


>gi|189426956|ref|YP_001950055.1| 5'-3' exonuclease [Ralstonia phage RSL1]
 gi|189233268|dbj|BAG41625.1| 5'-3' exonuclease [Ralstonia phage RSL1]
          Length = 250

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 46/259 (17%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +F+VDG+ +++RA +    +    +GLP + +A        ++     +  A    V FD
Sbjct: 3   IFVVDGNWYLWRAAHVYKSILPMAEGLPYDVLA--------MVMKDALQLKAHATLVAFD 54

Query: 67  YPAVTFRNEIYPDYKANRPK------------------IPEMLLPQLPLVRLATQAFGIP 108
             A  FRN++YP+YKANR +                  + + +   LP +       G+ 
Sbjct: 55  -GARLFRNKLYPEYKANRREGRLNDGQHDAENGPVRGDLRDQVYGALPGIYQLFDEVGLA 113

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTII--STDKDLMQLVSPTTCLYDTVKEEK---- 162
             +   +EADD++ +   +A   G   T+I  + DKD  Q + P+  LYD+  + K    
Sbjct: 114 YYQPPKYEADDVLCS---VAHAFGNEHTVICGTKDKDAYQYLRPSVRLYDSSAKGKDGKS 170

Query: 163 ----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
               I  E  +KK+G+ P +M+  Q L GD  DNI  +P +       LL EYG++   +
Sbjct: 171 KPRFITEEDCVKKFGVLPRQMIAYQTLLGDPGDNIMPLPNMKPARVKKLLNEYGSVTKWM 230

Query: 219 INASRIKQKKRRENILEYA 237
                  +++R E+I + A
Sbjct: 231 ------AKRQRGEDIPDSA 243


>gi|156085240|ref|XP_001610103.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Babesia bovis
           T2Bo]
 gi|154797355|gb|EDO06535.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Babesia bovis]
          Length = 346

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 126/322 (39%), Gaps = 70/322 (21%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV-TFRNEIYPDYKANRPKI 87
           K+ G  + AI GF N L ++ ++   + I     + FD P   + + E++P+YKANR  I
Sbjct: 20  KYVGTEIGAIVGFMNSLGRIYKSFGPKYIG----IAFDSPGSNSTKREVWPEYKANRQTI 75

Query: 88  PEMLLPQL-------------PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE--- 131
                 QL               ++ AT+A  I A  I      + I       E+E   
Sbjct: 76  QTSFKKQLMWIKEFCAIIGIPVFLKRATEADDIIASMIGFLSGGNTINERAATGEEEVQR 135

Query: 132 ------------------------------------------GFAVTIISTDKDLMQLVS 149
                                                      F V +++ DKDL+Q++ 
Sbjct: 136 LKQVDYRVPDSTSGGVFDRVLRSTGRELEPLDLCDSGDINHRKFDVHVLTADKDLLQVLE 195

Query: 150 PTTCLYDTV-------KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
                  +V       K   +D + VI ++GIPP +     AL GDS DNIPG+ GIG K
Sbjct: 196 YNDDANISVRIIQPHKKFRTVDEDTVIDEYGIPPSRFSEYLALVGDSADNIPGVMGIGPK 255

Query: 203 TAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
           TA +L+ +Y + + I+ +    K  KR E      + A     +  LR DVP+   L  L
Sbjct: 256 TAPVLISKYNSFKQIIESDEIAKIAKRSEKHNVSVQRAYDFHLITKLRADVPVLSSLSQL 315

Query: 263 ILEDCNGPRLISFLKALEFTKL 284
             +     + ++F +     K 
Sbjct: 316 CKKRTLESQFVAFCRMFSLQKC 337


>gi|110741816|dbj|BAE98851.1| hypothetical protein [Arabidopsis thaliana]
          Length = 131

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 70  VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE 129
           + FR+ +YP YK+NRP  P+ ++  L  ++ + +A  I  IE+ G EADD+I T    + 
Sbjct: 1   MNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSI 60

Query: 130 KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-IPPEKMVCLQA 184
             GF V ++S DKD  Q++SP+  L              +E   KK+G + P + V + A
Sbjct: 61  SAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFVDIIA 120

Query: 185 LTGDSIDNIPG 195
           L GD  DNIPG
Sbjct: 121 LAGDKSDNIPG 131


>gi|115304357|ref|YP_762649.1| DNA polymerase [Cyanophage Pf-WMP4]
 gi|110559071|gb|ABG75891.1| DNA polymerase [Phormidium phage P4]
 gi|113201851|gb|ABI33163.1| PfWMP4_19 [Phormidium phage Pf-WMP4]
          Length = 630

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 128/602 (21%), Positives = 234/602 (38%), Gaps = 96/602 (15%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           L+K   +   + +  N  YD  VL  +G+ +    + D M++++ ++  +  + + S  +
Sbjct: 46  LEKLLTDPDVIFVIQNAAYDVWVLRHHGVDIPPGRYVDTMVLAHCVNPQQGDYSLESYGR 105

Query: 511 ----KWLSY----TRKEILKSRKSSIPIDKISDSQVQE-HAIENSNVILQLWLLLRPKLI 561
               + + Y     R  + +  K    +  +  + + E + +++  + L+ W  L P L 
Sbjct: 106 SVDDEKVDYRTEMVRAGLWEGGKEDPSVYDVPFNPIMERYGLQDVRLTLKWWGELLPHLE 165

Query: 562 VE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE----ISKNLLSLEENI--- 613
            + +L   Y  +  P ++    +   G+ ID+    + + E    I +  L         
Sbjct: 166 RDARLADSYYNIHLPAVETTISLH-GGLYIDRKATLKAATELMGDIEEGYLEFARRYPKV 224

Query: 614 -----------YD--LSGEKF-----NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
                      YD  + G K      NL SP  +  +L+     P+  K  TG+   T+Q
Sbjct: 225 YKMKWNDKTKEYDIVMKGGKPVMTAPNLQSPNDMASLLYMMGWVPTEFKRSTGK-PVTSQ 283

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF------------Y 703
           D+ ++   D+     + E        +T+  SL + +  + Q +               +
Sbjct: 284 DVLKLLIADDETPPKLKE-------CATFVQSLRSLVGIQNQLMQLLELVDDKGFVKGNW 336

Query: 704 SLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAFISPPTKKLISADYSQIELRILAH-- 760
               T T R +S  PN+QN   +    G+++R  F  PP   +   D SQIEL I+A   
Sbjct: 337 YQTGTQTFRYSSSSPNMQNFSTRHPKWGKRVRECFTPPPGYVMFMGDLSQIELAIVAWYL 396

Query: 761 --IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----QMRRHAKTINFSIIYGISP 814
             +A  + + +      D H +     +GV  E  +P    Q R  AK   F+  YG   
Sbjct: 397 EILAGDSAMAEGNRQGRDAHDVNTENWYGVTRES-NPDEFKQCRPRAKNGAFAANYGAKY 455

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN-----------------G 857
            RLA  +     EA D ++    R   I    +   + +RQ+                 G
Sbjct: 456 RRLAFTIGCSFEEAKDILET-VERATQITPLKQLVWDTMRQSRDVLPVQVPYSWRKTTKG 514

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           ++      R+ Y  I+S +   R  +ER A NA  QG  A I R+     ++SL   +  
Sbjct: 515 FLYDCLNTRLFYPGIDSKERYERESSERKAFNALAQGGCASILRKL---CNQSLPYIQAG 571

Query: 918 TKMLLQ-IHDELVFEVPEEEITTASQIIVH---SMEKACLPKINLRVPLKVNIKVSNNWQ 973
                  +HDE +  V E+    A + I+H         LP     V ++   K+ N+W 
Sbjct: 572 EGWFAGLVHDEAIGYVKEQ---YADETIIHLNREWNSLTLPSPQGGVFVRAEFKIVNSWS 628

Query: 974 EE 975
           ++
Sbjct: 629 DK 630


>gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus]
          Length = 169

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 29/189 (15%)

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP      +++R  F +   K L+ +D+SQIELRI +       + + F+   D
Sbjct: 1   DPNLQNIP------RELRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRD 54

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-----IPRSEAA-- 829
           +HR  A+ + G   E+VS + R+ AK +NF +IYGIS   L+   +     +   EA   
Sbjct: 55  LHRYTASILLGKREEEVSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLSVDEAQKI 114

Query: 830 -DYIKRYFHRFPGIHEYIEKT-KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            D    YF  F   HE +++  K F    GY  T+ GR+  Y     P           A
Sbjct: 115 RDKFFEYFVSFKNWHEKVKRELKEFKESRGY--TLLGRK--YVAHTFPD----------A 160

Query: 888 INAPIQGSA 896
           +N PIQG+ 
Sbjct: 161 VNYPIQGTG 169


>gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
 gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1388

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 116/533 (21%), Positives = 221/533 (41%), Gaps = 67/533 (12%)

Query: 465  IGHNI-KYDKLVLHR-YGISMRGF------EDIMLMSYVLDSGRSS--HDIASIAQ---- 510
            +GHN+ +YD   L R YG+ ++         D ++M+ +   G  +  +D+  +A     
Sbjct: 871  VGHNVLQYDLPALQRLYGLDVKALIKADRVRDTLVMARLRAGGDKNLKYDLDKVASRCGV 930

Query: 511  --KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLL- 566
              K L+     +    K     DKI         ++N N +      +R  + V EKLL 
Sbjct: 931  DGKLLADGETALKALAKQFGGFDKIP--------VDNPNYVEYALQDVRANVAVYEKLLT 982

Query: 567  -------HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
                     Y RL+   +  ++ +E  GI++D   + Q  AE  +    +   + D  G 
Sbjct: 983  SVGKEINQDYLRLEHAKMHALAVVEARGIRVDTSKVDQFLAEEEQTKGEIRTWLIDTVGI 1042

Query: 620  KFNLSSP------KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
                 SP      KQ+     ++    +  +T  G   T+ + L ++    +P +  ++E
Sbjct: 1043 PDEGKSPWASAAGKQVIADYLSQFNV-AAPRTSKGSISTSTKALNEL-AEKHPDVPEVVE 1100

Query: 674  WRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLAS-TMTGRLASLEPNLQNIPIKTDLGQ 731
                +K+++    S P + IN+  +    + S+ S   TGRL++ +P +     + +   
Sbjct: 1101 L--AAKMETLLHASTPASTINRYLRGDRVYPSIKSIQATGRLSTTKPGMTVFGSRGEWLI 1158

Query: 732  KIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R   +   T + L+S D SQI+ R +A  +      Q+F    D H  +A  +FG   
Sbjct: 1159 RQREMILPDSTDEALVSVDLSQIDARCMAAGSGDANYAQLFTPGRDAHTEMALRVFG--- 1215

Query: 791  EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
                   R  AK +  +  YG+     A    I   EA   ++R  + FP + ++ +  +
Sbjct: 1216 ---DASRRSDAKALAHAANYGMGQKSFAQHAGISEVEATKQLERLHYEFPALEKFKDHLR 1272

Query: 851  NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
                 +G++ T FGRR+  D     K+  R     AA     QG+A D+    ++++   
Sbjct: 1273 KHAAAHGWIPTGFGRRVTVDRA---KAYTRG---PAAYG---QGTARDVFLEGVLNLPA- 1322

Query: 911  LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-NLRVPL 962
                ++   + + +HDE+V  VP +        ++ + +   LP    + VP+
Sbjct: 1323 ----EVLEMVRIFVHDEIVLSVPRDRAEEIKHTVMGAFQAVELPNTGGVDVPV 1371


>gi|68069867|ref|XP_676845.1| DNA polymerase 1 [Plasmodium berghei strain ANKA]
 gi|56496719|emb|CAH97694.1| DNA polymerase 1, putative [Plasmodium berghei]
          Length = 842

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 16/169 (9%)

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           II NI  +R+  K+   Y ++LP HI K T+++H  ++     TGRL+  +PNLQNI  K
Sbjct: 678 IINNIKLYRESKKLFQNYIENLPKHIQKNTKKIHCNFNQLGASTGRLSCDQPNLQNIHSK 737

Query: 727 TDLGQKIRRAFISPPT------------KKLISADYSQIELRILAHIAKITPLYQVFENS 774
                 ++   + P +            K L++ DY Q+EL ++A+++    L ++  NS
Sbjct: 738 FRCTISLKFNELKPTSIQKQDIKNKSVNKNLLTFDYKQMELFVMAYLSFDNQLLKMLNNS 797

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
            D+   V  ++   N  +V+ ++RR  KT+ + I+YG S   LA  L +
Sbjct: 798 -DV--FVETKVL-FNTNEVTKELRRMTKTVIYGILYGQSENGLAKNLLV 842



 Score = 37.7 bits (86), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +L +Y ++++P+I  +S++E  GI ++Q  ++++    S N L  ++ I +L G   NL+
Sbjct: 448 ILTLYIKIEQPLIFCISEIEKEGIYLNQKKIQEIQNN-SNNPLIYKKQIEELCGYDINLN 506

Query: 625 SPKQLGDIL 633
           S KQ+  +L
Sbjct: 507 SSKQVSSLL 515


>gi|119717066|ref|YP_924031.1| 5'-3' exonuclease [Nocardioides sp. JS614]
 gi|119537727|gb|ABL82344.1| 5'-3' exonuclease [Nocardioides sp. JS614]
          Length = 289

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 62  AVIF--DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           AV+F  D    + R + YP YKA R +    L+ QL        A G+  +   G EADD
Sbjct: 16  AVLFGLDDRRTSVREQAYPAYKAGRAEKDPALVDQLERAAGLLDALGMLTVTPDGLEADD 75

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK-----EEKIDIEHVIKKWGI 174
           + A+    AE+ G++  +I++D+D    +S  T +   +         ++   +   +G+
Sbjct: 76  VNASAATWAEQHGWSCVLITSDRDAFAHISEHTQVLRLISGGINGSPLLNPARLRTMYGV 135

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
             E  +   AL GD  DN+PG+PGIG K A  LL E G++  +
Sbjct: 136 AAEHYLEYAALRGDPSDNLPGVPGIGEKIAPFLLSEMGSMRAV 178


>gi|330859587|emb|CBX69927.1| uncharacterized exonuclease xni [Yersinia enterocolitica W22703]
          Length = 215

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 16/186 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R       +    D   VNA     + L +L+ +S+     +H   +F
Sbjct: 4   HLLIVDALNLIRR-------IHAVQDSPSVNACQ---HALQQLISHSQ----PTHAVAVF 49

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++  PDYKA R  +P+ L  ++PL+R A  + G+      G EADD+ AT
Sbjct: 50  DEDDRSDSWRHQSLPDYKAGRSPMPDNLQQEMPLIREAFNSLGVNCWSSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 110 LAIKIGEAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPDYW 169

Query: 184 ALTGDS 189
            L G S
Sbjct: 170 GLAGIS 175


>gi|163937889|ref|YP_001642775.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
 gi|163865744|gb|ABY46800.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
          Length = 359

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 131/318 (41%), Gaps = 67/318 (21%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI----TPLYQVFENS 774
           NLQNIP ++  G ++R AF        ++AD SQIE RI+AHI         L  +F   
Sbjct: 32  NLQNIPARSKEGARVRGAFKPQEGWFYLAADLSQIEPRIMAHIMWTIYGDNSLRSIFTAG 91

Query: 775 LDIHRMVAAEIFGVN----IEKV-----SPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            D++  +A  +F ++    ++K      + + R   KT   +  Y          + +  
Sbjct: 92  RDLYTTMAMMVFNLDEKYCVDKAYDPTGTFKPRAMMKTGVLAKSYDQQVGNFCNTMGVSI 151

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY---------------- 869
                + +++   FP     +   + F    GY ET++GR+  +                
Sbjct: 152 EVGNMFYEKFDTAFPSFINMVRDKRKFAYDKGYSETLYGRKRRFPQLAEWSKIVKRNERK 211

Query: 870 ----------------------------DEINSPKSSIRNI---NERAAINAPIQGSAAD 898
                                       +E+  P + +RN+    ERA+ N+ IQG+ AD
Sbjct: 212 LMDLYIERARIRKKVVKSRYDFERLDTLEELIKPMAEMRNMVGYWERASFNSVIQGTGAD 271

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS-QIIVHSMEKACLPKIN 957
           I +  MI +++  E  K    +   IHDE+  EVP +++T  +  +I   M K+    + 
Sbjct: 272 ILKLNMIRLYR--ECQKRGWYLNASIHDEIKVEVPRKDLTLENCDLITDIMTKS----VE 325

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L +PLK +  +   W +E
Sbjct: 326 LSLPLKSDTVIETVWGKE 343


>gi|167947001|ref|ZP_02534075.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 112

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 154 LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
           L +T+ E   D + V+ K+G+ PE+++   AL GDS DNIPG+P  G KTAA  L +YG+
Sbjct: 2   LINTMSESYTDRDGVVAKFGVTPEQIIDYLALVGDSADNIPGVPKCGPKTAAKWLGQYGD 61

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           L+N++ +A  IK K   EN+    E   LSR+L  ++ DV +
Sbjct: 62  LDNLIAHADEIKGKI-GENLRASLEQLPLSRQLATIKLDVAL 102


>gi|168021165|ref|XP_001763112.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685595|gb|EDQ71989.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 302

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 22/208 (10%)

Query: 72  FRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           +R  + P YKA R                  L   LPL+        IP ++ +  EADD
Sbjct: 68  YRRALLPSYKAKRNFYRPLGAGYGHSSAANDLRKALPLIHGFLSLCHIPVVKQEFAEADD 127

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           +IAT    A  +GF V I S D D  QL++P   +   V E        +++ + +    
Sbjct: 128 VIATLARQARHKGFQVVIASPDMDFQQLLTPDVHMLLPVPELGRWSFFTLQNYVAQNTAT 187

Query: 176 PEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKR 229
           P+  + L+ L GD  DN+PG+    PG G  TA  L+ ++G+LEN+L  A+   + ++  
Sbjct: 188 PDLELGLKCLLGDVSDNVPGLPDVSPGFGKNTALKLMLKHGSLENLLAAAATRTVGREYI 247

Query: 230 RENILEYAETARLSRKLVMLRTDVPITI 257
           ++ + ++    R + +++ LRTDV + +
Sbjct: 248 QDALKKHENLLRRNLQVLSLRTDVDVVL 275


>gi|320541049|ref|ZP_08040478.1| putative Ssb-binding protein, misidentified as ExoIX [Serratia
           symbiotica str. Tucson]
 gi|320028888|gb|EFW11138.1| putative Ssb-binding protein, misidentified as ExoIX [Serratia
           symbiotica str. Tucson]
          Length = 174

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 1/174 (0%)

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148
           E L  ++P ++ A    G+ +    G EADD+ AT        G  VTIISTDK   QL+
Sbjct: 1   ENLRQEMPQLQQAFAKLGVASWHSPGNEADDLAATLAAKIASGGHQVTIISTDKGYCQLL 60

Query: 149 SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
           +P+  + D  ++  +D+  V +++G+ P+++     L G S   IPG+ GIG KTA  LL
Sbjct: 61  APSVQIRDYFQKRWLDMPFVQQEFGVTPQQLPDYWGLAGISSSKIPGVAGIGPKTAVSLL 120

Query: 209 QEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
           Q+ G+L+ +     ++ +K R + + ++ E A +S+++  L TD+ +   L+ L
Sbjct: 121 QQMGSLDELYRQLQQVPEKWRSK-LQQHRELAYISKRVATLSTDLTLDGNLQQL 173


>gi|32442301|gb|AAP82221.1| DNA polymerase [Podovirus GOM]
          Length = 399

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 182/421 (43%), Gaps = 49/421 (11%)

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSG-RSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
           D LVL R     R   D +     LD+    SH + +  Q+ L + + +  ++  +    
Sbjct: 1   DTLVLSRLVYPNRRERDAIHRWKYLDTKLYGSHSLKAWGQR-LDFAKGDYGQTEDA---W 56

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +K+S++ V E+ I++  +  +L+ +L+PKL   K L     L++ +  + ++ E  GI  
Sbjct: 57  EKLSEAMV-EYCIQDVELTHKLYGILKPKLQSRKALS----LEQELTVICNRQERHGIPF 111

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFN--LSSPK------QLGDILFTKLKFPSG 642
           D D  +   +++      L+  + D  G  +   L  PK      +L  ++F        
Sbjct: 112 DVDRAQLFYSDLCGRRSELQTELIDKFGWWYTGELREPKTKPSYSKLIKVVFNPRSRQHI 171

Query: 643 AK-------------TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           AK             T +G+ K     L ++   + P  K + E+  ++K  S  A+   
Sbjct: 172 AKRLKDFYNWKPTEFTPSGEPKVDESVLSKL---EYPEAKLLTEYLLVNKRISQLAEEDQ 228

Query: 690 NHIN-KRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLIS 747
             +  +R  R+H   +   ++T R +   PNL  IP +    G++ R  F +P   + + 
Sbjct: 229 AWLKLERNGRIHGRVNTMGSVTSRCSHSHPNLAQIPSVSAPYGKECRELFCAPEGFRFLG 288

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            D S +ELR LAH   +      F+N     +++  +I  VN        R  AKT  ++
Sbjct: 289 VDISGLELRCLAHYMAL------FDNGDYGKKLLEDDIHTVNQNAAGLSTRNQAKTFIYA 342

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR---QNGYVETIFG 864
            +YG    ++ + +     E A   KR+  + P     +EK +N V+   Q GY++ + G
Sbjct: 343 FLYGAGDEKIGSIVGGSSEEGAKLKKRFLSQIPA----LEKLRNAVKKKAQKGYLKGLDG 398

Query: 865 R 865
           R
Sbjct: 399 R 399


>gi|302789077|ref|XP_002976307.1| hypothetical protein SELMODRAFT_105035 [Selaginella moellendorffii]
 gi|300155937|gb|EFJ22567.1| hypothetical protein SELMODRAFT_105035 [Selaginella moellendorffii]
          Length = 277

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 7/201 (3%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R ++ P YKA R K  + L P     R    +  I  ++    EADD++AT        
Sbjct: 57  YRRKLLPSYKAGRRKF-KPLDPSFKWTRGIVLSVDIHVVKADNAEADDVVATLARQVNDR 115

Query: 132 GFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
                I S DKD  QLVS    L     D  +     ++  +++    P   +  + L G
Sbjct: 116 SLKAVIASRDKDFKQLVSENVELLIPFADLRRWSFYTVKDDVEQHKCEPGIELGHRCLLG 175

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAETARLSRK 245
           D+ D +PG+PG G KT+  L++++G+LEN+L  A+   + +   ++ + E++     + K
Sbjct: 176 DAADGVPGVPGFGRKTSLKLMRKHGSLENLLSAAAIRTVGKPYIQDALKEHSVLLEKNLK 235

Query: 246 LVMLRTDVPITIPLEHLILED 266
           ++ LR D+ + +P+E  +  D
Sbjct: 236 VLSLRRDINVELPVEWCLSRD 256


>gi|308403489|ref|ZP_07493848.2| hypothetical protein TMLG_03582 [Mycobacterium tuberculosis
           SUMu012]
 gi|308365714|gb|EFP54565.1| hypothetical protein TMLG_03582 [Mycobacterium tuberculosis
           SUMu012]
          Length = 240

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 21/165 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +  D
Sbjct: 61  LVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA--VCLDLD 118

Query: 67  YPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      G
Sbjct: 119 WRP-QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPG 177

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----PTTCLY 155
           FEADD++ T      ++   V ++S D+DL+Q+V+    P   LY
Sbjct: 178 FEADDVLGTLATRERRD--PVIVVSGDRDLLQVVADDPVPVRVLY 220


>gi|330938828|gb|EGH42350.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 89

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 7  LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
          L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+FD
Sbjct: 6  LVLVDGSSYLYRAFHALPPLATS-KGLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60

Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL 95
              TFR+ +Y DYKANRP +P+ L  Q+
Sbjct: 61 AKGGTFRDALYNDYKANRPSMPDDLRVQV 89


>gi|117530349|ref|YP_851192.1| DNA polymerase [Microcystis phage Ma-LMM01]
 gi|117165961|dbj|BAF36269.1| DNA polymerase [Microcystis phage Ma-LMM01]
          Length = 320

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 41/240 (17%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR-------------- 779
           R A  +PP    +S D+S  ELR+    +K + + +++      HR              
Sbjct: 9   RFALQAPPGYAWVSVDFSSQELRLAGAFSKDSAITEIYVLEDKYHRGIRPLPLSPEGLTY 68

Query: 780 --------MVAAEIFGVNIEK---------------VSPQMRRHAKTINFSIIYGISPFR 816
                   +VA+     +IE+               +SP  R+  K +NF +IYG S   
Sbjct: 69  TDPKVDQHLVASTFLNKDIERRMIHEPWTVSADDPVISP-WRKKGKIMNFKVIYGGSASS 127

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA  L     EA   +K+YF  F G++ +IE T +   +  +V +  GR I+ +E N+  
Sbjct: 128 LAADLNCDDKEAGRLLKQYFTGFHGLYTWIEITGSLCSRTRWVRSAMGRFINVNEDNAKG 187

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK---MLLQIHDELVFEVP 933
            + ++   R A+N+ IQ S +++ + ++  V +++E      +   ++   HDE+   VP
Sbjct: 188 IAGKSTTRRKAVNSVIQSSGSEMLKISLPRVRQAIETIDAGERRASIINATHDEINLLVP 247


>gi|330004306|ref|ZP_08304864.1| 5'-3' exonuclease, SAM domain protein [Klebsiella sp. MS 92-3]
 gi|328536678|gb|EGF63000.1| 5'-3' exonuclease, SAM domain protein [Klebsiella sp. MS 92-3]
          Length = 325

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 22/222 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           ++ ++DG+S     +Y      + H G +  +A+ GF   +       R  S+     ++
Sbjct: 7   NILIIDGNSL---GYYHQQQPKKLHSGDMETHAVFGFITNM------RRYASLLKARPIV 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFEAD 118
                   R E YPDYKANR    EM         Q P ++ A  + G+  I     EAD
Sbjct: 58  LWDGFSDKRREFYPDYKANRDDNAEMKQMKEGFAVQKPFIKKAITSLGVDQITAIDGEAD 117

Query: 119 DI--IATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLYDTVKEEKIDIEHVIKKWG 173
           D+  I    Y+A K+   + +++ D D +QLV        L +  K ++I+IE   +  G
Sbjct: 118 DLAGILKKRYVASKDVEHIYLLTADSDWIQLVDEKVTWVSLREDAKHKRINIEAFSELTG 177

Query: 174 IP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            P P   +  +AL GD  DNI  + GIG K A  L+ EYG++
Sbjct: 178 YPTPRGYLEGKALQGDKSDNIQQVGGIGDKGAMDLINEYGSI 219


>gi|194383398|dbj|BAG64670.1| unnamed protein product [Homo sapiens]
          Length = 611

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 105/187 (56%), Gaps = 8/187 (4%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V ++  EN   + +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++
Sbjct: 393 VNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEK 452

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKTKTGQWK 651
            SA +   L  LE+  + ++GE+F ++S  QL +ILF KLK        S  +T   ++ 
Sbjct: 453 TSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 512

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T++ +       +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TG
Sbjct: 513 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 570

Query: 712 RLASLEP 718
           RL++  P
Sbjct: 571 RLSAKHP 577


>gi|167945573|ref|ZP_02532647.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 161

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 5/126 (3%)

Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KE 519
           K+G N+KYD  VL RYGI +RG   D ML SYVLDS  S HD+ S+A+K+L Y     ++
Sbjct: 6   KVGQNLKYDMSVLARYGIELRGIAFDTMLESYVLDSTASRHDMDSLAKKYLHYDTIHFED 65

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMID 578
           +    K  +  D+I       +A E++++ L+L   L P+L  E  L  +   L+ P++ 
Sbjct: 66  VAGKGKKQLTFDQIPLESAAPYAAEDADITLRLHQTLWPRLQAEPTLASLTTDLEVPLVP 125

Query: 579 VVSQME 584
           V+S++E
Sbjct: 126 VLSRIE 131


>gi|152003765|gb|ABB17229.2| DNA polymerase [Cyanophage S-CBP2]
          Length = 588

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 140/338 (41%), Gaps = 39/338 (11%)

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T TG+ K   + L  I   +      ILE ++   + S   +S    + K  +  H+   
Sbjct: 280 TDTGKPKIDEEVLNAIGTEEAKKFGRILELQKHVGMLSEGKNSWLQMVEKDGRIHHS--C 337

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAK 763
           + +T TGR A + PNL  +P     G + R  F        + AD S +ELR LAH +A+
Sbjct: 338 VLNTATGRNAHMRPNLAQVPS----GHEFRELFTPGEGYVQVGADASGLELRCLAHYLAR 393

Query: 764 ITPLYQVFENSL---DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
                  F   L   DIH  +A  I+G +        R+  KT+ + +IYG    +L   
Sbjct: 394 FDG--GKFGKVLLEGDIHTDLA-NIYGTD--------RKTGKTVTYCLIYGGGDTKLGLS 442

Query: 821 LRIPRSEAADYIKRY----FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
              P+  AA   K+          G  + I   +    Q+G +  I GR           
Sbjct: 443 AGEPKKSAASRGKKIRQAIMKDLDGFAQLITAVQERA-QSGVITGIDGR----------- 490

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             IR     AA+N  +Q   A I ++ ++  ++ L +  +    L  +HDE    V  ++
Sbjct: 491 -PIRMRKAHAALNYLLQSCGAVICKKWVVRSNELLTEAGIDYTPLAFVHDEQQLAVRPDQ 549

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +  AS +I  +M K     I  RVPL  +++   NW +
Sbjct: 550 VEMASTLISLAM-KDVEHAIKFRVPLDCDVQSGANWGD 586


>gi|221053243|ref|XP_002257996.1| 5'-3' exonuclease, N-terminal resolvase,putative [Plasmodium
           knowlesi strain H]
 gi|193807828|emb|CAQ38533.1| 5'-3' exonuclease, N-terminal resolvase,putative [Plasmodium
           knowlesi strain H]
          Length = 447

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 41/286 (14%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             +VDGSS +++ F+  P L  + + + ++ I GF   L K+     K    S+  ++FD
Sbjct: 130 FLIVDGSSILFKNFFGMPYLKNESE-INLSTIYGFIQSLNKVY----KLFCPSYVVIVFD 184

Query: 67  YPAVTFRNEIYPDYKAN---RPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             + T  +E    Y      R K PE L  QL LV       GI  +     E+D+ IA 
Sbjct: 185 --SKTSNDEKKKIYAKYKIMRKKNPEELYEQLKLVNDFCDLIGIKTVSPTNVESDNYIAA 242

Query: 124 YT--------------YIAEKEG-------FAVTIISTDKDLMQLVSPTTCLYDTV---- 158
                           Y +   G       F V ++S+DKDL+QL+      ++ +    
Sbjct: 243 IVDSISNTLKAGNISHYSSPNGGETTTQKEFRVIVVSSDKDLLQLLEYNDDAHNNMDISI 302

Query: 159 -----KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
                K   +D    I++  + P +      + GD  D I GIP IG KT+  LL+++  
Sbjct: 303 CQPNRKYRVVDASTFIQEHNLLPAQYSDYLIMAGDKTDGITGIPNIGDKTSKNLLKQFHT 362

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL 259
           ++NIL N   + Q K     L   E   + RKL+ L+ +   ++ L
Sbjct: 363 IDNILKNLHNLPQ-KLHAIFLNNFENINIFRKLIKLKCETHQSLVL 407


>gi|225420465|ref|ZP_03762768.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
 gi|225040896|gb|EEG51142.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
          Length = 110

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 4/110 (3%)

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           +GRR    E+ S     R   ER A+N+PIQG+AAD+ + AMI V + L+   + ++++L
Sbjct: 1   YGRRRPIPELKSANFMQRQFGERVAMNSPIQGTAADVMKIAMIRVDRELKKRNMKSRIVL 60

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           QIHDEL+ E    E+     ++   M+ A     +L+V L+V+ KV ++W
Sbjct: 61  QIHDELLVETERSEVEAVKALLEEQMKGAA----DLKVALEVDAKVGDSW 106


>gi|302838945|ref|XP_002951030.1| hypothetical protein VOLCADRAFT_117717 [Volvox carteri f.
           nagariensis]
 gi|300263725|gb|EFJ47924.1| hypothetical protein VOLCADRAFT_117717 [Volvox carteri f.
           nagariensis]
          Length = 455

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 71/152 (46%), Gaps = 15/152 (9%)

Query: 78  PDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTI 137
           P YKA R    E+    L  ++       +P +     EADD+       A + G AV I
Sbjct: 233 PSYKAGRTSKGEVFYADLSNLQRLLGLMSVPPLLRPWLEADDLAGLLVEQAVQHGMAVRI 292

Query: 138 ISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           +S D+DLMQL+          +E       V+   G+PP  +   +AL GD+ D +PG+ 
Sbjct: 293 LSGDRDLMQLL----------READ-----VVSALGVPPALVADYKALVGDASDCLPGVN 337

Query: 198 GIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           GIG KTA  LL  YGNL  I      +  K+R
Sbjct: 338 GIGPKTAVSLLASYGNLAGIYRAVGEMTPKRR 369


>gi|239502682|ref|ZP_04661992.1| hypothetical protein AbauAB_10247 [Acinetobacter baumannii AB900]
          Length = 345

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 17/220 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN + LVD +S  Y A +A  L S     +   A+  F     K ++  R+    +   V
Sbjct: 2   ENLIILVDANSIGYAAQHAIKLYS---GSMQTQAVFSFI----KTMRELRQRYPHAGMVV 54

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFEA 117
           ++D  A  +R E  P YK+NR   P M         Q P ++ A +A GI  +     EA
Sbjct: 55  LWDGRA-EWRFEREPSYKSNRKSDPRMQQEHDAYKAQCPFIKRALKALGIKQMTSAIHEA 113

Query: 118 DDIIATYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-IDIEHVIKKWGI- 174
           DD+        A      + +I+ D+D +QLV P     D   E + I   +  +K G  
Sbjct: 114 DDLAGILVQRFASDPNNRILLITGDRDWLQLVKPNVSWRDPRDESRFIHWANFYEKTGFK 173

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            P   +  +AL GDS D I G+ GIG  TA  +L EYG++
Sbjct: 174 SPVAFLQGKALQGDSSDCISGVGGIGEATAIKILAEYGSV 213


>gi|158425221|ref|YP_001526513.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
 gi|158332110|dbj|BAF89595.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
          Length = 609

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 132/309 (42%), Gaps = 25/309 (8%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKI 733
           ++L +I +T  ++   H+ K   R+H   +    +TGR+   +PN+  +P   +  G + 
Sbjct: 315 KRLGQI-ATGKEAWLKHV-KADGRIHGDVTTNGAVTGRMTHSKPNIAQVPGNGSPYGHRC 372

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R  F++   K L+  D   +ELR LA               L+  + +  ++  +N + +
Sbjct: 373 RELFVAAKRKLLVGCDADALELRCLAGYMARYDGGAYVRTVLEGKKELGTDMHTLNAKAL 432

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF----PGIHEYIEKT 849
               R  AK   ++ IYG   F+L T L  P+ E   + +R   RF    P +   I+K 
Sbjct: 433 GCS-RDVAKVWFYAFIYGAGDFKLGTILGAPKGEEQKWGRRSRARFLKALPALGTIIKKV 491

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           +  V++ G++  + GR             +R  +  +A N  +Q + A + + A++ + +
Sbjct: 492 QEKVQKKGFLRGLDGR------------ELRVRSAHSAFNTLLQSAGAVLMKMALVLLDE 539

Query: 910 SLEDHKLAT----KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            L+          + +  +HDE   EV EE      +  V ++ +A         PL  N
Sbjct: 540 DLQAAGYVPGQHYEFVANVHDEWQIEVNEEIAEDVGKRAVTAIVRAG-EHFGFGCPLSGN 598

Query: 966 IKVSNNWQE 974
             V  +W E
Sbjct: 599 FAVGRSWAE 607


>gi|213029602|ref|ZP_03344049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 79

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 56/73 (76%)

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+QG
Sbjct: 4   YFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQG 63

Query: 895 SAADITRRAMISV 907
           +AADI +RAMI+V
Sbjct: 64  TAADIIKRAMIAV 76


>gi|302840030|ref|XP_002951571.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
 gi|300263180|gb|EFJ47382.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
          Length = 1758

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 14/151 (9%)

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           RR AK +NFSI YG +   LA   +  + EA + + ++         Y ++ + F     
Sbjct: 60  RRKAKVLNFSIAYGKTAHGLAVDFKTTKEEAQETVDKW---------YSDRWEEF----- 105

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
            V T+ GR      I+SP   +   + RAAIN PIQGSAAD+   AM+++HKS       
Sbjct: 106 KVRTLLGRTRPLPNISSPDFRLSGHSNRAAINTPIQGSAADVAAAAMVAIHKSEALRATG 165

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
            K+L+QIHDE++ E P +    A ++++  M
Sbjct: 166 FKLLMQIHDEVILEGPRDRSEDAKRLVMELM 196


>gi|329923373|ref|ZP_08278856.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus sp. HGF5]
 gi|328941364|gb|EGG37657.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus sp. HGF5]
          Length = 104

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 7/96 (7%)

Query: 7   LFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L LVDG + ++RA+YAT     + R   G+P NAI GF   +W  +   +     +H A 
Sbjct: 11  LMLVDGMALLFRAYYATASSGYIRRTKAGVPTNAIYGFLRYMWDAIDKFQ----PTHVAC 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
            +D  + TFR E +  YK NRP+ P+ L+PQ  LVR
Sbjct: 67  CWDMGSKTFRTEQFASYKGNRPEAPDDLVPQFSLVR 102


>gi|238059068|ref|ZP_04603777.1| LOW QUALITY PROTEIN: 5'-3' exonuclease [Micromonospora sp. ATCC
           39149]
 gi|237880879|gb|EEP69707.1| LOW QUALITY PROTEIN: 5'-3' exonuclease [Micromonospora sp. ATCC
           39149]
          Length = 250

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 10/126 (7%)

Query: 7   LFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           + L+D  S  +RA++  P   +R  DG PVNA+ GF +ML  L++  R + +    A+  
Sbjct: 102 ILLIDAPSLYFRAYFGVPESAARATDGTPVNAVRGFLDMLATLVRTRRPDRMVC--ALDH 159

Query: 66  DYPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           D+    +R  + P YKA+R       ++P+ L PQ+P++     A GI A+   G+EADD
Sbjct: 160 DWRP-DWRVALLPSYKAHRVAPEGGEEVPDTLTPQVPVILDVLAAIGITAVGAAGYEADD 218

Query: 120 IIATYT 125
           ++ T +
Sbjct: 219 VLGTLS 224


>gi|84994918|ref|XP_952181.1| 5'-3' exonuclease [Theileria annulata strain Ankara]
 gi|65302342|emb|CAI74449.1| 5'-3' exonuclease, putative [Theileria annulata]
          Length = 501

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 25/192 (13%)

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC------LYDTVK 159
            +P  E      +DI++   Y     G+ +T+++ DKDL+Q++S          +    K
Sbjct: 310 ALPYREYPVTSENDIMSNGVY----RGYDITVVTADKDLLQILSQNDVNKINVKIVQPHK 365

Query: 160 EEKIDIEHVIKK-WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             +I  +H +K+ +GI PE+     AL GD+ DNIPGI GIG KTA  L+Q+Y + ++IL
Sbjct: 366 SYRIVNQHTVKQEYGIEPERFSEYLALVGDTADNIPGIMGIGPKTAPKLIQKYQSFDDIL 425

Query: 219 ----INASRIKQKKRRENIL---EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
               I+    K  K RE++    E+    +L R L +L++       ++ L+  +    +
Sbjct: 426 RSEEISKLSSKGGKYRESVRMAHEFHSIVKLKRNLRVLKS-------MDQLVKSNALTCQ 478

Query: 272 LISFLKALEFTK 283
           L  FLK     K
Sbjct: 479 LSKFLKMFSLQK 490



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + +VDG+   YR F+A P L +   G  +  + GF N L +L     +     +  V+FD
Sbjct: 128 VMIVDGTGLAYRCFFALPDL-KTSKGTDIGCLMGFMNSLARL----HRMFDPKYIGVVFD 182

Query: 67  YPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            P     + +I+P+YK NR  +      QL  +R      G+P       EADDII +
Sbjct: 183 SPGANDEKRDIWPEYKLNRQVVSYSFRNQLGWIREFCAILGLPVFIEPSTEADDIITS 240


>gi|325171249|ref|YP_004251221.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512275|gb|ADX87732.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512343|gb|ADX87799.1| putative DNA polymerase [Vibrio phage ICP2_2006_A]
          Length = 710

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 145/608 (23%), Positives = 239/608 (39%), Gaps = 132/608 (21%)

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQK 511
           EN   L +G NIK+D L + R     R         D  L  Y+L      H +AS+ + 
Sbjct: 72  ENGVLLLVGQNIKFDLLWMMRTYPDFRDMLPNLCIWDTQLAEYLLTG--QDHKMASLNEL 129

Query: 512 WLSYTR-------KEILKSR--KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            + Y          E  K+    S IP   +   + Q++ + N+ ++   +L    ++I 
Sbjct: 130 AMKYGGTLKDDRIAEFWKAGVDTSDIPFPMLE--EYQKYDVINTEIV---FLEQVDQIIK 184

Query: 563 EKLLHV-YERLDKPMIDVVSQMEITGIQIDQDLL----KQVSAEIS--KNLLSLEENIYD 615
           E LL++   ++D  M    ++ME  G++ D+DL     K + AEI   K  +S       
Sbjct: 185 EGLLNLTMTQMDALM--ATTEMEWHGMKFDKDLALELAKPLQAEIEDIKGAVSSVMEAVG 242

Query: 616 LSGEKFNLSSPKQLGDILF-----------------TKLKFPSGA--------------- 643
              +  N+ S  Q+  ++F                 T   F  GA               
Sbjct: 243 FPKDSINVGSNSQISALIFGGEVKYKEKDYIYNDDGTIATFKGGARAGQPKTKIFERSKR 302

Query: 644 ----------KTKTGQWKTTAQDLEQINC---GD---NPIIKNILEWRQLSKIKSTYADS 687
                     K K G +      L ++     GD     ++ +IL++RQL K  +TY   
Sbjct: 303 IEGLCKPISPKGKNGSYPVGDDSLSKVKAKYKGDAVVEQLVGDILKFRQLEKDVNTYYIG 362

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQK------------IR 734
             + +      +H  Y+   T TGRL+S  PNLQNI     DL +K            I+
Sbjct: 363 YASQVFPDGC-LHGNYNHTKTGTGRLSSSSPNLQNISNSGKDLQRKNNKTTQRFHMSDIK 421

Query: 735 RAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA---------E 784
           R  IS  P  K++  D+SQ+E+   A +     + +     +D H M A+         E
Sbjct: 422 RCIISRFPNGKIMECDFSQLEVVGGAVLTGDPMMKKDIIEGVDTHCMSASWANPKYSYEE 481

Query: 785 IF-GVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           I  G   E     ++R++AK +NF++ YG      A    I   +A   I  Y+ R+  +
Sbjct: 482 ILAGYKAEDPFFTKLRKNAKPVNFALQYGAGAETAAENAGIEVEQAQAIIDNYYKRYCVL 541

Query: 843 HEY----IEKTKNFVRQ-------------NGYVETIFGRRIHYDEINSP-----KSSIR 880
            ++    IE+  N  RQ              G      GR   + E ++P     +  + 
Sbjct: 542 KQFQDDVIEQV-NKSRQPSSRRTEMGMPAGRGEYRNPTGRIFTFYEYDAPEFLRRRGQMT 600

Query: 881 NINERAAINAPIQGSA-ADITRRAMISVHKSL-EDHKLATKMLL--QIHDELVFEVPEEE 936
           + +     N P Q  A  DI    +  ++K L  D  L  K LL   +HD +VF+V  + 
Sbjct: 601 SFSPTQCKNYPTQSFATGDIVPMMLGHIYKLLMTDKTLRDKCLLIGTVHDSVVFDVHPDI 660

Query: 937 ITTASQII 944
           +  A++ +
Sbjct: 661 LDYAAKAV 668


>gi|4678934|emb|CAB41325.1| putative protein [Arabidopsis thaliana]
          Length = 384

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 90/280 (32%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA-V 63
             + L+DG+S IYRA+Y   LL+R + G   +A     N  W L       +I S  + V
Sbjct: 117 GRVMLIDGTSIIYRAYYK--LLARLNHGHLAHADG---NADWVL-------TIFSSLSLV 164

Query: 64  IFDY----------------------PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
           +FD+                        + FR+ +YP YK+NRP  P+ ++  L  ++ +
Sbjct: 165 VFDHDEPFSGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKAS 224

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL---------VSP-- 150
            +A  I  IE++                       ++S DKD  Q+         ++P  
Sbjct: 225 IKAMSIKVIEVR-----------------------VVSPDKDFFQILSPSLRLLRLTPRG 261

Query: 151 TTCLYDTVKEEKI---DIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           + C+  T    ++    +E   KK+G + P + V + AL GD  DNIP            
Sbjct: 262 SDCVKATASCGRMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIP------------ 309

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
                G LEN+L +   IK+ K +E+++  A+ A LS+KL
Sbjct: 310 -----GTLENLLQSVDEIKEGKIKESLIASADQAILSKKL 344


>gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 562

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 49/319 (15%)

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMT 710
           T A +LE+I   D+P ++ +L +++L ++ + +  + L + +  R  R    Y    T++
Sbjct: 248 TRAWELERI---DHPAVEPLLRYKKLYRLHTAHGWAWLQSWV--RDGRFRPEYLPGGTVS 302

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR  +       IP      + +RRA ++ P  +L+ AD  Q+E R+LA I++   L +V
Sbjct: 303 GRWTTNGGGALQIP------KVVRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEV 356

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             +  D++  ++   F           R  AK      +YG +             +   
Sbjct: 357 AGSGRDLYATLSDRAFSGR--------RELAKLALLGAVYGQT-----------SGDGLK 397

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH---------YDEINSPK----- 876
           ++     RFP    Y+++      +   V T  GR             DE   P+     
Sbjct: 398 HLAALRRRFPAAVAYVDEAARAGEEGRLVRTWLGRTCPPVGGGAEEPADEAGLPREQEEP 457

Query: 877 --SSIRNINERAAI--NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
              S  +   R     N  +QGSAAD     + ++ +SL    L  +++   HDE++   
Sbjct: 458 SYGSTASARARGRFTRNFVVQGSAADWALLMLAALRRSLTGAGLRAEIVFFQHDEVIVHC 517

Query: 933 PEEEITTASQIIVHSMEKA 951
           P+EE  T  + I  + E A
Sbjct: 518 PQEEADTVREAIAEAGETA 536


>gi|255070583|ref|XP_002507373.1| predicted protein [Micromonas sp. RCC299]
 gi|226522648|gb|ACO68631.1| predicted protein [Micromonas sp. RCC299]
          Length = 1659

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 12/113 (10%)

Query: 862  IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
            ++ RR   D         R+ +ER A+N   QGSAAD+ +RAMI+V   L D  LAT  +
Sbjct: 1548 LYSRRFRLD---------RSADERRAVNTACQGSAADVVKRAMIAVFDEL-DPSLATP-V 1596

Query: 922  LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            LQIHDEL+FEV    +  A++ +   ME+A   +  L VPL V +    NW +
Sbjct: 1597 LQIHDELLFEVDASRVVEAARAVRAIMERAG-DEFGLTVPLPVKVSAGANWGD 1648


>gi|213163760|ref|ZP_03349470.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 103

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 5/103 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMG 103


>gi|71030922|ref|XP_765103.1| 5'-3' exonuclease [Theileria parva strain Muguga]
 gi|68352059|gb|EAN32820.1| 5'-3' exonuclease, putative [Theileria parva]
          Length = 470

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVK------EEKIDIEHVIKK-WGIPPEKMVCLQA 184
           G+ +T+++ DKDL+Q++S        VK        +I  +H +K+ +GI PE+     A
Sbjct: 301 GYDITVVTADKDLLQILSENDANKVNVKIVQPHKSYRIVNQHTVKQEYGIDPERFSEYLA 360

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPGI GIG KTA  L+Q+Y + ++IL +    K   +     E    A    
Sbjct: 361 LVGDTADNIPGIMGIGPKTAPKLIQKYQSFDDILRSEEITKLSSKGGKYRESVRMAHEFH 420

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
            +V L+ ++ +   ++ L+  +    +L  FLK     K
Sbjct: 421 SIVKLKKNLRVLKSMDQLVKSNALTCQLSKFLKMFSLQK 459



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + +VDG+   YR F+A P L +   G  +  + GF N L +L     +     +  V+
Sbjct: 97  DRVMIVDGTGLAYRCFFALPDL-KTSKGTDIGCLMGFMNSLARL----HRMFDPKYIGVV 151

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     + +I+P+YK NR  +   L  QL  +R      G+P       EADDII +
Sbjct: 152 FDSPGANDEKRDIWPEYKLNRQVVSYSLRNQLGWIREFCAILGLPVFIEPSTEADDIITS 211


>gi|229472225|gb|ACQ72627.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472385|gb|ACQ72707.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 31/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P + +     R+ F + P   ++ AD + IELR+LAH +A+       F+    
Sbjct: 1   PNLAQVPSEAEF----RKLFTATPGMVMVGADLAGIELRMLAHYLAR-------FDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAAD 830
              ++  +I   N +K+    R+  KT+ ++ +YG    ++      QL     R++ A+
Sbjct: 50  GDVLINGDIHQENADKIGIS-RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N 
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGRRIACD------------GPHKALNY 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 157 LLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|88856344|ref|ZP_01131003.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814428|gb|EAR24291.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 523

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 110/255 (43%), Gaps = 25/255 (9%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R H+   +    TGR A   P LQNI       + +R   ++P  + L+S D+SQ+E R+
Sbjct: 267 RTHSTLYVRRARTGRGAVTGPALQNIH------RGLRPLLMAPVGEVLVSLDFSQMEPRV 320

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE----KVSPQMRRHAKTINFSIIYGIS 813
            A +++   L    E+  D++  ++  I+G   +    K +P +R  AKT+   I YG  
Sbjct: 321 SAGLSQDPDLLAALESG-DLYAELSRRIWGAEADDADGKPNPLLRDRAKTLMLGIFYGEG 379

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
              L   L I   +A   +   +  FPG+  Y    ++ VR      T  GR +      
Sbjct: 380 KNALGRALGIEPKDAKVLLDSVWAAFPGLQAYDLWLQSEVRAGRPAFTQDGRPVPL---- 435

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
            PK  +      AA+N  +Q  +ADI   A+  V   L    L     L +HDELV  VP
Sbjct: 436 -PKRGL-----HAALNNRVQAESADIFWAAVARVAAVLGPKSL----FLGVHDELVVSVP 485

Query: 934 EEEITTASQIIVHSM 948
                 A  ++   M
Sbjct: 486 ANRSEWARIVLEREM 500


>gi|229472247|gb|ACQ72638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 31/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P + +     R+ F + P   ++ AD + IELR+LAH +A+       F+    
Sbjct: 1   PNLAQVPSEAEF----RKLFTATPGMVMVGADLAGIELRMLAHYLAR-------FDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAAD 830
              ++  +I   N +K+    R+  KT+ ++ +YG    ++      QL     R++ A+
Sbjct: 50  GDVLINGDIHQENADKIGIS-RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N 
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKRKARQYSYINAIDGRRIACD------------GPHKALNY 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 157 LLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|289804725|ref|ZP_06535354.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 163

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G
Sbjct: 100 GNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFG 159

Query: 174 IPP 176
           + P
Sbjct: 160 VLP 162


>gi|221066661|ref|ZP_03542766.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
 gi|220711684|gb|EED67052.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
          Length = 766

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 144/359 (40%), Gaps = 70/359 (19%)

Query: 668 IKNILEWRQLSKIKSTYA--DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           +  I  WR L   + T A  D L   ++    R+H  +    T+TGRL +  P       
Sbjct: 425 LPGIAAWRDLCDARRTLASCDDLIASVSP-NGRLHPLFGY-DTVTGRLTAKRP------A 476

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP--------LYQVFENSLDI 777
              + Q++R A  +P    +ISADYSQIELRI A  A+           L   F   +D 
Sbjct: 477 SMAMDQRLRSAVTAPEGSVIISADYSQIELRIAACFAEKMRAGTGLPGMLATAFRTGVDP 536

Query: 778 HRM-----------------VAAEIFGVNIEKVSPQMRR------HAKTINFSIIYGI-- 812
           H                    AA I G+  E+      R       AK  NF ++YG+  
Sbjct: 537 HLTTALQSVRQRGDIDFTGNAAAYIAGLCDEERCELKSRLFVERDTAKAQNFGLLYGMKD 596

Query: 813 SPF----RLATQLRIPRSEAADYIKRYFHRFPGI---HEYIEKTKN-------FVR-QNG 857
           S F    RLA  L     EA      +F  +P I   H+  + T +       F++  +G
Sbjct: 597 SSFWEYGRLAYGLTWTFEEAQAARDAWFKMYPEIALLHDSYQSTFSAAAKETLFLKAHDG 656

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
             +T   R +    ++  K  +   +    ++   QG+ ADI   A+ S+     DH   
Sbjct: 657 VFQTTTSRVVSGATLSGRK--VTATSPFLLLSYACQGTGADIIISAIASM-----DHGTR 709

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSM---EKACLPKINLRVPLKVNIKVSNNWQ 973
             ++  +HDELV  VPE      +  +  +M   E A   + N  +P  V+I V N+W 
Sbjct: 710 RHLVNVVHDELVLCVPESCSQREAAEVRRAMLSAEDAVFAQYN--IPASVDITVGNSWS 766


>gi|229472229|gb|ACQ72629.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472329|gb|ACQ72679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 31/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P + +     R+ F + P   ++ AD + IELR+LAH +A+       F+    
Sbjct: 1   PNLAQVPSEAEF----RKLFTATPGMVMVGADLAGIELRMLAHYLAR-------FDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAAD 830
              ++  +I   N +K+    R+  KT+ ++ +YG    ++      QL     R++ A+
Sbjct: 50  GDVLINGDIHQENADKIGIS-RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N 
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGRRIACD------------GPHKALNY 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 157 LLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|156093852|ref|XP_001612964.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Plasmodium
           vivax SaI-1]
 gi|148801838|gb|EDL43237.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium vivax]
          Length = 442

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 37/276 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             +VDGSS +++ F+  P L  + + + ++ I GF   L KL     K    S+  ++FD
Sbjct: 125 FLIVDGSSILFKNFFGMPHLKNESE-INLSTIYGFIQSLNKLY----KLFCPSYVVIVFD 179

Query: 67  YPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                  + +IY  YK  R K PE L  QL LV       GI  +     E+D+ IA   
Sbjct: 180 SKTSNDGKKKIYAKYKIMRKKNPEELYEQLKLVSDFCDLIGIKTVSSTDVESDNYIAGMV 239

Query: 126 --------------YIAEKEG-------FAVTIISTDKDLMQLVSPTTCLYDTV------ 158
                         Y     G       F V ++S+DKDL+QL+      ++ +      
Sbjct: 240 DSISNTLRERSSPEYFPPNGGETITKNHFRVIVVSSDKDLLQLLEYNDDAHNNMHIAICQ 299

Query: 159 ---KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
              K   +D    +++  + P +      + GD  D I GIP IG KT+  LL+++ +++
Sbjct: 300 PNRKYRLVDASTFVQEHNLLPAQYSDYLIMAGDKTDGIAGIPNIGDKTSKHLLKQFHSID 359

Query: 216 NILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
           NIL N   +   K     L   E   + RKL+ L+ 
Sbjct: 360 NILQNLHNL-PPKLHALFLNNVENINMFRKLIKLKC 394


>gi|85708302|ref|ZP_01039368.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
 gi|85689836|gb|EAQ29839.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
          Length = 515

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 32/263 (12%)

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            + T R+    PNLQNIP      +K R    S    +L   D+ Q E+ I+A ++    
Sbjct: 277 GSRTSRVQIRSPNLQNIP------KKYRSIINSRDDAQLCYVDFDQFEVGIMAALSGDEM 330

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL---ATQLRI 823
           L +++    D++ + A    G+         R+ AK +  S  YG+S   L   A  L +
Sbjct: 331 LKELYAAG-DMYELFATTQLGL------VDNRKAAKQLFLSYAYGMSRKALVDAAVSLGV 383

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R +A    K+ F +F G  ++        ++ G V +I G           +  +    
Sbjct: 384 ERQKA----KKAFRQFRGYEDWKRTVWTEFQKAGRVSSILGNHFR----REGQGQLTGKE 435

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           +R+A++  +QG+A+ I +RA+ISV  SLED ++A    L +HD L+FE   +E       
Sbjct: 436 QRSAVSQVVQGTASLIFKRALISV-ASLEDLRVA----LPMHDALLFEHRSDETPAK--- 487

Query: 944 IVHSMEKACLPKINLRVPLKVNI 966
           +V   E      +N  V  K +I
Sbjct: 488 VVEVFESVMTVSLNSEVSGKASI 510


>gi|229472251|gb|ACQ72640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 31/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P + +     R+ F + P   ++ AD + IELR+LAH +A+       F+    
Sbjct: 1   PNLAQVPNEAEF----RKLFTATPGMVMVGADLAGIELRMLAHYLAR-------FDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAAD 830
              ++  +I   N +K+    R+  KT+ ++ +YG    ++      QL     R++ A+
Sbjct: 50  GDVLINGDIHQENADKIGIS-RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N 
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGRRIACD------------GPHKALNY 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 157 LLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|229472471|gb|ACQ72750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 31/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P + +     R+ F + P   ++ AD + IELR+LAH +A+       F+    
Sbjct: 1   PNLAQVPSEAEF----RKLFTATPGMVMVGADLAGIELRMLAHYLAR-------FDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAAD 830
              ++  +I   N +K+    R+  KT+ ++ +YG    ++      QL     R++ A+
Sbjct: 50  GDVLINGDIHQENADKIGIS-RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N 
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGRRIACD------------GPHKALNY 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 157 LLQSSAGVIAKRWMLLTDESLRQGSIEAHQLAFVHDE 193


>gi|282857717|ref|ZP_06266926.1| DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282584387|gb|EFB89746.1| DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 656

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 124/335 (37%), Gaps = 71/335 (21%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQI 753
           R  R+H        +TGR   + PN+  +P +    G + R  F +PP   ++ AD S +
Sbjct: 336 RDGRIHGHVITNGAVTGRCTHVSPNMAQVPAVGVPWGAEFRSLFYAPPGWSVLGADASGL 395

Query: 754 ELRILAH-IAKITP---LYQVFENSLDIHRMVAAEIFGV--NIEKVSPQMRRH------- 800
           ELR LAH +A+        ++ E   DIH    A+  G+    EK  P+   H       
Sbjct: 396 ELRCLAHFMARYDGGAYARKILEG--DIH-WANAQALGLVAEGEKKDPENPYHMWARNKV 452

Query: 801 AKTINFSIIYGISPFRLA------------------------TQLRIPRS---------- 826
           AK   +++ YG    +L                         T  R+ +           
Sbjct: 453 AKRFIYALNYGAGDHKLGELVELTDDQAKALLAAAPKSKIDQTSARLAKQFQYKTITFKD 512

Query: 827 -----EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
                + A+    +    P +   IE  K   ++ GY+  +  RR++   I+S       
Sbjct: 513 IAQSLKGAELRATFMKNLPALASLIEDVKRVAKKRGYLIGLDKRRLNVRSIHS------- 565

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM--LLQIHDELVFEVPEEEITT 939
                A N  +Q + A   ++A   +   L    LA K+  +  +HDE    V E E   
Sbjct: 566 -----AFNTLLQSAGAIAVKKATCVLWDDLTTAGLADKVQQVAHVHDEYQLLVKEGEEEH 620

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             QI   +  KA L     R+PL    K   NW E
Sbjct: 621 VGQIATAAFGKAGL-FFEFRIPLAGEFKFGRNWAE 654


>gi|213025636|ref|ZP_03340083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 99

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID  +L + S
Sbjct: 1   YAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHS 60

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
            EI+  L  LE+  +D++GE FNLSS KQL  ILF K
Sbjct: 61  EEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEK 97


>gi|291301867|ref|YP_003513145.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
 gi|290571087|gb|ADD44052.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
          Length = 548

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 148/365 (40%), Gaps = 60/365 (16%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  SP+Q+    F K   P     +T    T A +L+ I   D+P +  +L +++LS++
Sbjct: 217 FNPDSPQQV-LAAFRKAGHP----IET----TRAWELKTI---DHPAVPPLLRYKELSRV 264

Query: 681 KST--------YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
            S         +    P   +   +R    Y +   +TGR A+       IP      + 
Sbjct: 265 HSAHGWNWLSEWVGDGPGGPDSPAKRFRPRYVVGGVVTGRWATDGGAALQIP------KV 318

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR A  +    KL+ AD +Q+E R+LA +++   +    E   D++  +A    G     
Sbjct: 319 IRAAATADAGHKLVVADAAQLEPRMLAAMSQDPGMIAAAEAD-DMYAALAPTFDG----- 372

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
                R  AK    S +YG +       L + R            RFP  + Y+E+    
Sbjct: 373 ----SRDDAKIALLSAMYGGTAGNATALLTVMR-----------RRFPTAYAYVEQAARD 417

Query: 853 VRQNGYVETIFGRRI------HYDEINSPKSSIRNINERAAI--NAPIQGSAADITRRAM 904
             + G V T  GR         ++ +  P  + R+  +R     N  +QG+AA+     M
Sbjct: 418 GEKGGLVRTWLGRTSPAPGDGWWNALTGPGGT-RSARDRGRFTRNFVVQGTAAEWALSMM 476

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVP 961
             +   L + +L   +  Q HDE++    +    T + +I    ++A      ++++RVP
Sbjct: 477 ALLRSRLWERELGDLVFFQ-HDEIIVHCEQSRAETVAGLIQECADQATRLLFGRLSMRVP 535

Query: 962 LKVNI 966
           L   I
Sbjct: 536 LSAAI 540


>gi|229472383|gb|ACQ72706.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 31/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P + +     R+ F + P   ++ AD + IELR+LAH +A+       F+    
Sbjct: 1   PNLAQVPSEAEF----RKLFTATPGMVMVGADLAGIELRMLAHYLAR-------FDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA----TQLRI--PRSEAAD 830
              ++  +I   N +KV    R+  KT+ ++ +YG    ++      QL     R++ A+
Sbjct: 50  GDVLINGDIHQENADKVGIS-RKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N 
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGRRIACD------------GPHKALNY 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 157 LPQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|213865448|ref|ZP_03387567.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
          Length = 101

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 5/92 (5%)

Query: 4  ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
          EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6  ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL 95
          +FD    TFR+E++  YK++RP +P+ L  Q+
Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQI 92


>gi|255591756|ref|XP_002535585.1| DNA polymerase I, putative [Ricinus communis]
 gi|223522595|gb|EEF26798.1| DNA polymerase I, putative [Ricinus communis]
          Length = 409

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 20/212 (9%)

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLL------PQLPLVRLATQAFGIPAIEIQGFE 116
           +I+D  A  +R ++ P YK+ R + PE         PQ   +R A + F +  I   G E
Sbjct: 53  IIWDGRA-QWRYDLLPTYKSGRHRTPEQRADRAAYEPQRLHIRHALRFFPVIQILHPGAE 111

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-IDIEHVIKKWGIP 175
           ADD+    ++    +G  V + ++D D MQ V P     +  K  + I++E   +  G  
Sbjct: 112 ADDVAYGLSHQLAAQGHLVDLHTSDTDWMQTVGPRVRWVNARKAAQVIELEGFARATGFA 171

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P      +AL GD  D+I G+PG+    A+ L+ +YG++  +L  A         E++ 
Sbjct: 172 TPALYAQGKALAGDDTDDIIGVPGVAMGRASALIAKYGDVAGVLHAA---------EDVF 222

Query: 235 EYAETARLSRKLVM--LRTDVPITIPLEHLIL 264
            +++  +  R L++  +R  V   +PL  L L
Sbjct: 223 TFSQEPKYYRHLMLPEVREQVRKNLPLVDLSL 254


>gi|88856925|ref|ZP_01131576.1| DNA polymerase A [marine actinobacterium PHSC20C1]
 gi|88813801|gb|EAR23672.1| DNA polymerase A [marine actinobacterium PHSC20C1]
          Length = 517

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 34/278 (12%)

Query: 700 HTF--YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           H F    L    TGR +   P L      T L +K R   I       IS D+ + E  +
Sbjct: 267 HVFPMVHLRGAKTGRGSVTGPAL------TSLSKKYRSLIIPEDGAVFISLDFDRAEPTV 320

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            A +++   L +    + D++R +A ++FG    +     R   KTI   I+YG     L
Sbjct: 321 AAALSQDEGLQEALSTT-DVYRELAVKVFGEQARE-DDIARATCKTIFLGILYGRGAQGL 378

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           + QL I ++EA + I+  +  FP ++ Y E  K         + I G+     E+ +P  
Sbjct: 379 SQQLGISKAEATETIRSVWDSFPALNAYCEGLK--------ADAIAGK-----ELRTPWG 425

Query: 878 SIRNINERAAINAP---IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
            +  +  R     P   IQ SAAD+    + +V + L     A ++ L IHDE++ +  +
Sbjct: 426 RLLPVPNRGPYQTPNLMIQASAADVFYVGLKNVVELLG----ADRLTLPIHDEILLQSSQ 481

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++  +S ++  +M    +P +N+ V  +   ++  +W
Sbjct: 482 GDVFRSSALLEEAM---TVPFLNMTVTGQTK-QLGGSW 515


>gi|196009946|ref|XP_002114838.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
 gi|190582900|gb|EDV22972.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
          Length = 628

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 163/415 (39%), Gaps = 119/415 (28%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLE----------------ENIYDLSGEKFNLSSP 626
           ++IT I+ID +LL+         L +LE                ++I  +SG  F+L SP
Sbjct: 302 LDITPIRIDTELLRDYQPIFEAKLEALEKKAHQVYCIIFIKRLRQSILQISGYSFSLQSP 361

Query: 627 KQLGDILFTKLKFPS------GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           KQ+  ILF KLK           KTK  Q  +T+ ++                   L+KI
Sbjct: 362 KQIETILFEKLKLDQVLKLNLVLKTKKKQSLSTSDEV-------------------LNKI 402

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           KST  D +   + K  Q +      A    G +   +   +N           R   I+ 
Sbjct: 403 KSTSIDGILRLMKKNMQAIPK----AMIDFGGIEDTKIFGENENETYKGSYSPRDMIITK 458

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGVNIEKVSPQMR 798
               L+S D+  IELR+LAH +  + L Q+F    +++I+  +A   F  NI+ +S    
Sbjct: 459 KNYSLVSVDFQAIELRLLAHFSNDSMLLQIFNEHPTINIYTWLATFWFNKNIDDISQAEF 518

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
             AK I +SI+YGI                         +FP + +Y        +QN  
Sbjct: 519 DQAKEICYSILYGIV------------------------KFPAVAKY--------KQN-- 544

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
                 RR H                        QGSAAD+ +  +I +   L D   A 
Sbjct: 545 ----LIRRCHE-----------------------QGSAADLYKLRLIELFAILTDE--AF 575

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP-KINLRVPLKVNIKVSNNW 972
           K + +I+  +    P  E      ++ + ME   +  +I L VP+KV+IKV  +W
Sbjct: 576 KSVSRIN--IFATCPRLE------VLYNVMESPNIGNEIRLTVPMKVSIKVGESW 622


>gi|316995410|gb|ADU79191.1| DNA polymerase [Enterobacter phage EcP1]
          Length = 865

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 129/633 (20%), Positives = 247/633 (39%), Gaps = 88/633 (13%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH 434
           K+I  W+QKL T  + S  I   ++  + ++   I+ +  +Q +  +F V+         
Sbjct: 175 KEISDWLQKLHTYPALSADIEAWSLKFYEARLGTISFA-WNQHEGIAFAVDF-------- 225

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSY 494
              +   ++ L   +L  LK FF       + HN  YD  V+  Y + M G  D   +  
Sbjct: 226 ---ERNYEDALAIRLL--LKGFFTEYKGKMLWHNGSYDLTVI-IYELWMNGLLDQKGLLT 279

Query: 495 VLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSS------IPIDKISD-SQVQEHAIENS 546
            LD   ++ HD   I     +      L  +  S        +D I D S + +  +   
Sbjct: 280 GLDVMTKNWHDTKIITYLATNSCAGNHLGLKAQSHEYAGNYALDDIKDISLIPKKDLVRY 339

Query: 547 NVI--LQLWLLLRPKLIV---EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           N+I  L  W +          +    +Y+ L  P +  + QM++TGI +D + + +V   
Sbjct: 340 NLIDSLCTWYVYGKHWQTMNDDNQRELYDDLFMPSLKNIIQMQLTGIPLDMEEVLKVEKI 399

Query: 602 ISKNLLSLEENIYDLS-------------------------------GEKFNLSSPKQLG 630
           + K  ++  + +   S                                ++FN  SP QL 
Sbjct: 400 LIKEKVTFYQEMLKFSVITDLVHSVRKRKCEKKNASLKTKQVTVEDFDDQFNPDSPLQLQ 459

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG-----DNPIIKNILEWRQLSKIKSTY- 684
           ++L+  +  P    T T    T A+ +E++           ++  ++++ +++KI +++ 
Sbjct: 460 ELLYDIMGLPVIDLTDTKAPATGAETMEKLKFKVKTPEHAELLDLLIKFSKVNKIITSFI 519

Query: 685 -ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPT 742
            A             +  F++L  T++GRL+S  PNLQ IP  K+   + I++ F +P  
Sbjct: 520 PAFKAAPKAEDGWHYLFGFFNLGGTVSGRLSSSNPNLQQIPSSKSPYSKVIKKCFRAPKG 579

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF------------GVN- 789
              +  D++ +E RI A   K +   +V+ +  D H + A   F             +N 
Sbjct: 580 FLFVGLDFASLEDRISAVTTKDSNKLKVYTDGYDGHCLRAYAYFKDEMPDIINTVESINS 639

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           IE     +R+ +KT  F + Y  +   L  +       A     RY   +    +++   
Sbjct: 640 IEGKYKDIRQKSKTPTFLLTYRGTYMGLMQKCGFDEPTAKQIESRYHELYKESDDWVNAR 699

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD-----ITRRAM 904
                + GYV   FG R+    ++      ++    A       G+A       +  RA 
Sbjct: 700 LEEATKVGYVTAAFGLRVRTPLLHQVVMGTKHTPYEAEAEGRTAGNALGQSWCLLNNRAA 759

Query: 905 ISVHKSLE---DHKLATKMLLQIHDELVFEVPE 934
           + V + LE   + ++  +    IHD   + +P+
Sbjct: 760 VDVAQRLEKLPELRMQIRPGAHIHDAQYYIIPD 792


>gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp.
           SA3_actG]
          Length = 555

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 168/419 (40%), Gaps = 76/419 (18%)

Query: 579 VVSQMEITGI----QIDQDLLKQVSAEI------SKNLLSLEENIYDLSGEKFNLSSPKQ 628
           V +++  TG+    +  +DLL+++  E        + L  L E I    G +     P +
Sbjct: 174 VAAELNATGLPWSAERHKDLLRELLGERYAGGGEPRGLAELAEEISRAFGRRVRPDLPAE 233

Query: 629 LGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           +      +    +G K T T +W     +LE++   D+P +  +L +++L ++ + +  S
Sbjct: 234 V-----VRAFAEAGVKLTSTRRW-----ELEKV---DHPAVAPLLTYKKLYRVWTAHGWS 280

Query: 688 -LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L + +  R  R    Y +   ++GR  +       IP      + +RRA ++ P  +L+
Sbjct: 281 WLADWV--REGRFRPRYVVGGAVSGRWTTAGGGALQIP------KVVRRAVVADPGWRLV 332

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            AD +Q+E RILA +A  T L  V   + D++  V+   F  +        R  AK    
Sbjct: 333 VADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAFAGD--------RDRAKIAVL 384

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIF 863
             IYG +              + D +K       RFP    Y+++      +   V T  
Sbjct: 385 GAIYGQT--------------SGDGLKNLAALRRRFPKAVAYVDEAARAGEEGRLVRTWL 430

Query: 864 GR-------------RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           GR              I  ++  +P  S      R   N  +QG+AAD T   + ++ + 
Sbjct: 431 GRTCPPLGGEVQEEAGIPQEDEPAPSPSASRARGRFTRNFVVQGAAADWTLLLLAALRRE 490

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVNI 966
           L  H    +++   HDE++   P  E      +I  +  +A   C     LRVP    I
Sbjct: 491 L--HTRKAELVFFQHDEVIVHAPASEAAEIPALITEAAREATRVCFGDTPLRVPFTTAI 547


>gi|284032329|ref|YP_003382260.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
 gi|283811622|gb|ADB33461.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
          Length = 551

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 48/298 (16%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P ++ ++E+++L +I +    S  N       R    +    T++GR  +       I
Sbjct: 252 DHPAVEPLIEYKKLYRIYTANGWSWLNDWVH-DGRFRPGFVPGGTVSGRWITNGGGGLQI 310

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      + IRRA ++ P  +L+ AD SQ+E R+LA I++   L +V  N+ D+++ V+ 
Sbjct: 311 P------KVIRRAVVADPGWRLVVADASQLEPRVLAAISRDPGLMEVAGNAADLYKAVSD 364

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF---HRFP 840
           + F  +        R  AK      IYG +              + D +K       RFP
Sbjct: 365 KAFSGD--------RAMAKLAVLGAIYGQT--------------SGDGLKNLAALRKRFP 402

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGR-------RIHYDEINSPKSSIRNINERAA------ 887
               Y++       +   V T  GR       ++   ++  P +    ++ R A      
Sbjct: 403 KAVAYVDDAARAGEEGRLVRTWLGRTCPPSGSQLDSAQLEGPPADEPQVDSRRARARGRF 462

Query: 888 -INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
             N  +QGSAAD     M ++ +S+  +K   +++   HDE++   P EE    +  I
Sbjct: 463 TRNFVVQGSAADWALLMMAALRQSIATYK--AELVFFQHDEVIVHCPAEEADQVAAAI 518


>gi|328866460|gb|EGG14844.1| hypothetical protein DFA_10717 [Dictyostelium fasciculatum]
          Length = 1213

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 43/187 (22%)

Query: 820  QLRIPRSEAAD-YIKRYFHR---FPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINS 874
            +LR+   ++ D ++  +F +   FP + ++I  TK   ++  YV T+ GR R  Y    S
Sbjct: 1022 ELRVMAHQSDDEHLLHFFQQDADFPKVKKFINDTKADTKKLKYVRTLLGRHRTFY----S 1077

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----------------------- 911
            P  +   I +R ++N+ IQGSAADI + AMI +++ L                       
Sbjct: 1078 PHLTPGEI-DRQSVNSIIQGSAADIIKAAMIRINQLLIQESKEVNQILQQQGQQQGQTNQ 1136

Query: 912  ---EDHKLATKMLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVN 965
               +D  +  ++LLQIHDEL+FE+P   +     I   I H ME  C     L+V LKV 
Sbjct: 1137 QQNKDDIIEARLLLQIHDELIFEIPNVMLEIKPDILEKIKHMME--C--STELKVDLKVA 1192

Query: 966  IKVSNNW 972
            +K+ N+W
Sbjct: 1193 MKIGNSW 1199


>gi|152968215|ref|YP_001363999.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
 gi|151362732|gb|ABS05735.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
          Length = 592

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 124/284 (43%), Gaps = 34/284 (11%)

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA-DSLPNHINKRTQRVHTFYSLASTMT 710
           T A  LE++    +P +  +L WR+  ++ +TY    L  H+     R+   +S A    
Sbjct: 297 TRAWRLERLREA-HPGVAALLAWRKAERLATTYGYRWLDEHVGA-DGRLRGEWSGADAAA 354

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR+ + +  L N+P       ++R A  + P   L+ AD  Q+E R+LA ++    L   
Sbjct: 355 GRM-TAQAGLHNLP------SELRPAVAAEPGHVLVRADLGQVEPRVLAAVSGDAGLVAA 407

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             +  D++  VAA + GV+        R  AK    + +YG +              A +
Sbjct: 408 TRDD-DLYAPVAAAL-GVD--------RPTAKVAVLAAMYGQT-----------SGAAGE 446

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK-SSIRNINERAAIN 889
            ++R    +P    Y+   +    +   V T  GR +   ++   +  +      R A N
Sbjct: 447 ALRRMERAYPTALGYLRAAELAGLEGRDVRTYGGRLVRISDLAPAEPGAATAARGRFARN 506

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           A +QG+AA++ +    +V   L     A +++L +HDEL+  VP
Sbjct: 507 AVVQGAAAELFKAWAAAVRAGLAGS--AGRIVLCLHDELLLHVP 548


>gi|228907507|ref|ZP_04071364.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200]
 gi|228851999|gb|EEM96796.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200]
          Length = 235

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 36/197 (18%)

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGI+   L+ QL I ++ A   I ++  + P    +  +T   V  NGYV+ +FGR+  
Sbjct: 3   LYGITEIGLSDQLNITKAAATSLINQFKKQLPNFLRWESETHREVLTNGYVKDLFGRKRR 62

Query: 869 YDEI---NSPKSSIRNIN--------ERAAINAPIQGSAADITRRAMISV---------- 907
           + E     +  S+ +N N        +R + N  IQG++A   ++AM+++          
Sbjct: 63  FKETILKATSSSTFKNKNSDWRLEKIKRQSCNFKIQGTSATQVKKAMVNLFYPTRPDGTK 122

Query: 908 -----------HKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
                      +KS LE+H +   ++LQIHDEL+F+VP++      + I + M  A +P 
Sbjct: 123 CLDRDEWLQENYKSILEEHDI--HIVLQIHDELIFDVPQDVSQDVLKKISNIMLNA-IPS 179

Query: 956 INLRVPLKVNIKVSNNW 972
            +L V    +I  S  W
Sbjct: 180 THLGVTFHSDIHTSPYW 196


>gi|213581474|ref|ZP_03363300.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 86

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H
Sbjct: 1   AINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-H 59

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + C     + VPL V +    NW +
Sbjct: 60  QLMENC---TRIDVPLLVEVGSGENWDQ 84


>gi|333025332|ref|ZP_08453396.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332745184|gb|EGJ75625.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 555

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 168/419 (40%), Gaps = 76/419 (18%)

Query: 579 VVSQMEITGI----QIDQDLLKQVSAEI------SKNLLSLEENIYDLSGEKFNLSSPKQ 628
           V +++  TG+    +  +DLL+++  E        + L  L E I    G +     P +
Sbjct: 174 VAAELNATGLPWSAERHKDLLRELLGERYAGGGEPRGLAELAEEISRAFGRRVRPDLPAE 233

Query: 629 LGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           +      +    +G K T T +W     +LE++   D+P +  +L +++L ++ + +  S
Sbjct: 234 V-----LRAFAEAGVKLTSTRRW-----ELEKV---DHPAVAPLLTYKKLYRVWTAHGWS 280

Query: 688 -LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L + +  R  R    Y +   ++GR  +       IP      + +RRA ++ P  +L+
Sbjct: 281 WLADWV--REGRFRPRYVVGGAVSGRWTTAGGGALQIP------KVVRRAVVADPGWRLV 332

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            AD +Q+E RILA +A  T L  V   + D++  V+   F  +        R  AK    
Sbjct: 333 VADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAFAGD--------RDRAKIAVL 384

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIF 863
             IYG +              + D +K       RFP    Y+++      +   V T  
Sbjct: 385 GAIYGQT--------------SGDGLKNLAALRRRFPKAVAYVDEAARAGEEGRLVRTWL 430

Query: 864 GR-------------RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           GR              I  ++  +P  S      R   N  +QG+AAD T   + ++ + 
Sbjct: 431 GRTCPPLGGEVQEEAGIPQEDEPAPSPSASRARGRFTRNFVVQGAAADWTLLLLAALRRE 490

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVNI 966
           L  H    +++   HDE++   P  E      +I  +  +A   C     LRVP    I
Sbjct: 491 L--HTREAELVFFQHDEVIVHAPASEAAEIPALITEAAREATRVCFGDTPLRVPFTTAI 547


>gi|228969100|ref|ZP_04130014.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|229073434|ref|ZP_04206570.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228709741|gb|EEL61779.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228790589|gb|EEM38276.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 235

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 36/197 (18%)

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGI+   L+ QL I ++ A   I ++  + P    +  +T   V  NGYV+ +FGR+  
Sbjct: 3   LYGITEIGLSDQLNITKAAATSLINQFKKQLPNFLRWESETHREVLTNGYVKDLFGRKRR 62

Query: 869 YDEI---NSPKSSIRNIN--------ERAAINAPIQGSAADITRRAMISV---------- 907
           + E     +  S+ +N N        +R + N  IQG++A   ++AM+++          
Sbjct: 63  FKETILKATSSSTFKNKNSDWRLEKIKRQSCNFKIQGTSATQVKKAMVNLFYPTRPDGTK 122

Query: 908 -----------HKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
                      +KS LE+H +   ++LQIHDEL+F+VP++      + I + M  A +P 
Sbjct: 123 CLDRDEWLQENYKSILEEHDI--HIVLQIHDELIFDVPQDVSQDVLKEISNIMLNA-IPS 179

Query: 956 INLRVPLKVNIKVSNNW 972
            +L V    +I  S  W
Sbjct: 180 THLGVTFHSDIHTSPYW 196


>gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK1057]
          Length = 643

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 122/288 (42%), Gaps = 54/288 (18%)

Query: 704 SLASTMT--GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
           SLA T+   G++ +L+   +N+P    L + IR AF+     + I AD++ IE R+LA +
Sbjct: 340 SLARTLVKEGQVETLDTLYENVP--GVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWL 397

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL-- 817
           +  +   +VFE   DI+   A+ +FGV +EK   +  +R+  K    ++ YG S   L  
Sbjct: 398 SGESWRLEVFEQGGDIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTA 457

Query: 818 --ATQLRIPRSEAADYIKRYFHRFPGIHEYI----------------EKTKNFV--RQNG 857
             A  + +   E    + ++    P I  +                 +K KN V   Q+G
Sbjct: 458 MGALDMGLEEEELQPLVNQWRSANPHIVAFWWEIDKVAKQVYETREPKKIKNLVISYQSG 517

Query: 858 --YVETIFGRRIHY-------DEINSPKSSIRNINE-----RAAINAP------IQGSAA 897
             ++    GR++ Y       +    P  +   I E     R     P      +QG A 
Sbjct: 518 MLFITLPSGRKLAYVKPRMGMNAFGKPGLTYEGIGESKKWTRLETYGPKLVENIVQGIAR 577

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           D+    MI + +          ++L +HDE V EV EE +    Q++ 
Sbjct: 578 DLLAYGMIQLKQK------GLAIVLHVHDEAVVEVREESVAKVCQLLA 619


>gi|262212351|gb|ACY35792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 97/219 (44%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
          Length = 1564

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 154/356 (43%), Gaps = 37/356 (10%)

Query: 587  GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
            G+++D DL++++ AE +  L +  E+I     +  N  S +Q+   L  +L  P   +TK
Sbjct: 1198 GLRLDADLVERLHAEQTAALTAASEHIRAFGVD--NPGSDQQVAAAL-ERLGAPL-PRTK 1253

Query: 647  TGQWKTTAQDLEQINCGDNPI---IKNILEWRQLSKIKSTYADSLPNHINKRTQRVH-TF 702
            TG+       L+ +   D  I   ++  L+++        + +     +     R   T 
Sbjct: 1254 TGRPSVAKGVLDPLKNVDGEIGDLVRARLDYQTAENRLGLFLEPYRQLVTNGDGRARPTI 1313

Query: 703  YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
            Y+LA+  TGR++ + PNLQ +P +       R    + P   LISAD+S +ELR+ A ++
Sbjct: 1314 YTLAAD-TGRMSCVRPNLQQVPREGGF----RACITADPGHVLISADFSGVELRVAAALS 1368

Query: 763  KITPLYQ-VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
            +   L   V +   DIHR +A  ++G +  K  P+ R  AK   F  +YG     L T  
Sbjct: 1369 QDQNLMAIVADPDRDIHREIAQLVWGPDAGK--PE-RYQAKRKVFGRLYGSGLNGLITS- 1424

Query: 822  RIPRSE--AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE--TIFGRRIHYDEINSPKS 877
              P SE  A   I+      PG+  +     + V   G  E     GR I+         
Sbjct: 1425 DPPVSEPIAKAIIEAMDLMTPGLSSWSRMVADGV-DAGRTEFQAYSGRTIY--------- 1474

Query: 878  SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
             +      A  N  IQG+A    R  +I         +    +LL +HDELV  VP
Sbjct: 1475 -MPTDRGYAGPNYCIQGTA----RELLIDALVRWSGTRWGNAVLLPVHDELVVHVP 1525


>gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK72]
          Length = 643

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 121/288 (42%), Gaps = 54/288 (18%)

Query: 704 SLASTMT--GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
           SLA T+   G+  +L+   +N+P    L + IR AF+     + I AD++ IE R+LA +
Sbjct: 340 SLARTLVKEGQFETLDTLYENVP--GVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWL 397

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL-- 817
           +  +   +VFE   DI+   A+ +FGV +EK   +  +R+  K    ++ YG S   L  
Sbjct: 398 SGESWRLEVFEQGGDIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTA 457

Query: 818 --ATQLRIPRSEAADYIKRYFHRFPGIHEYI----------------EKTKNFV--RQNG 857
             A  + +   E    + ++    P I  +                 +K KN V   Q+G
Sbjct: 458 MGALDMGLEEEELQPLVNQWRSANPHIVAFWWEIDKVAKQVYETREPKKIKNLVISYQSG 517

Query: 858 --YVETIFGRRIHY-------DEINSPKSSIRNINE-----RAAINAP------IQGSAA 897
             ++    GR++ Y       +    P  +   I E     R     P      +QG A 
Sbjct: 518 MLFITLPSGRKLAYVKPRMGMNAFGKPGLTYEGIGESKKWTRLETYGPKLVENIVQGIAR 577

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           D+    MI + +          ++L +HDE V EV EE +    Q++ 
Sbjct: 578 DLLAYGMIQLKQK------GLAIVLHVHDEAVVEVREESVAKVCQLLA 619


>gi|33321977|gb|AAQ06707.1|AF496050_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 80

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 54/80 (67%), Gaps = 2/80 (2%)

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG ILF KL  P   KTKTG + T+ + L Q+    +P + +ILE+RQ+SKI+ST
Sbjct: 1   NSPKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLK-EQSPXVSDILEYRQISKIQST 58

Query: 684 YADSLPNHINKRTQRVHTFY 703
           Y   L + I++R  R+HT Y
Sbjct: 59  YVKGLLDVIDERDGRIHTRY 78


>gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
 gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
          Length = 661

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 132/294 (44%), Gaps = 55/294 (18%)

Query: 562 VEKLLHVYERLDK-PMIDVV-------SQMEITGIQIDQDLLKQVSA--EISKN-LLSLE 610
           VE  L + +RL K P+ D V        ++  +GI +D D+++   A  E SK+ L++  
Sbjct: 190 VEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVENAIAFDERSKSALITAM 249

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           +NI +L      +   + L D         +G +T++   K  A  +++ + GD   I  
Sbjct: 250 KNITNLDNPNSVVQMKQWLSD---------NGVETESLGKKEVAGLIKETD-GD---ISK 296

Query: 671 ILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP----- 724
            L+ R QL+K       ++ N + K  +    F    +  +GR A     LQN+P     
Sbjct: 297 ALKLRLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQNHMS 356

Query: 725 -----------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
                                  I   L Q IR AFI+ P  K I +DYS IE R+LAH+
Sbjct: 357 DLTEARELVRTGDYDTLDMLYDDIPDTLSQLIRTAFIARPGYKFIVSDYSAIEARVLAHL 416

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           A  T   +VF    DI+   A+++FGV ++K  ++  +R+  K    ++ YG S
Sbjct: 417 AGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAELALGYGGS 470


>gi|307105222|gb|EFN53472.1| hypothetical protein CHLNCDRAFT_136747 [Chlorella variabilis]
          Length = 911

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 32/169 (18%)

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           +++QME  G+  D  LL++       ++  +EE   +L+G  FN +SP+QL ++L++ LK
Sbjct: 679 LLAQMEGAGLGFDPWLLREAGRVARSHMSRIEEECAELAGRPFNPASPQQLAEVLYSVLK 738

Query: 639 FP-------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS--------- 682
            P       S AKT     +T  Q LE +    +P+   +LE+R L    S         
Sbjct: 739 LPPPTGRGRSSAKTHL---RTDEQALEALRP-LSPLPGLVLEYRALQNFSSKWVEADWCR 794

Query: 683 ----------TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                      YA + P        RVH  +   ST TGRL+S  PNLQ
Sbjct: 795 AAAAGFESADAYAAARPG--GGGWPRVHCCWHQTSTATGRLSSSAPNLQ 841


>gi|294083961|ref|YP_003550718.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663533|gb|ADE38634.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 587

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 111/269 (41%), Gaps = 23/269 (8%)

Query: 707 STMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             +TGR      N   +P ++   G++ R  F  P    L+ +D S +ELR LA++ +  
Sbjct: 339 GAVTGRATHFNFNTAQVPSVRAPYGKECRELFGVPEGYSLVGSDLSGVELRCLANVLQDQ 398

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
             Y     + DIH          N+  +    R  AKT  + +IYG    RL   +    
Sbjct: 399 GKYANIILNADIHL--------ANMHSMGLTSRDQAKTAIYCMIYGGGDARLGEVVGKGA 450

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +E       +    P   + + + K  V + G++  + GR++          ++R     
Sbjct: 451 AEGRTLRNNFMKANPAFADLVRQLKQVVTKRGHLVGLDGRKL----------AVRG---H 497

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           A +N  +Q +AA ++++ +  +   +    +  +++  +HDE+  +V + +      I  
Sbjct: 498 AQLNVLLQSAAALLSKKWVELIDTEIATQGIDAEIIAWVHDEVQIKVRKGDEENVGHITG 557

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              E+A       ++P++    +  NW E
Sbjct: 558 RMAEEAG-KFFKFKIPIESEFNIGRNWAE 585


>gi|307106799|gb|EFN55044.1| hypothetical protein CHLNCDRAFT_134899 [Chlorella variabilis]
          Length = 1781

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 134/315 (42%), Gaps = 58/315 (18%)

Query: 553  WLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            W  ++P+L  I    + V    + P+  V++ ME  G+ ID   L+ + +++ +    +E
Sbjct: 1467 WEEVQPQLQAINGSTMAVLLEQEMPLAVVLAGMEAVGVGIDTQHLQSLRSQLEQRRKDIE 1526

Query: 611  ENIYDLSGEKFNLSSPKQLGDILFTKLKF-------PSGAKTKTGQW---KTTAQDLEQI 660
              I    G + +LS  K++ D+LF KL+        P   K K G +   K   Q L ++
Sbjct: 1527 LEIARALGRRLDLSKFKEVSDVLFGKLEGQLGLQPPPCAKKLKRGGYSANKEVMQALVRL 1586

Query: 661  NCGDNPIIKNILEWR-------------QLSKIKSTYADSL-------PNHINKRTQRVH 700
            N    P++K I E R             Q ++  +  A  L       P        R+ 
Sbjct: 1587 NPDCPPVVKLIAEHRRLAYSVWFIRQLLQCARAGAALAQQLEPAAGAAPLGRAGGGPRIW 1646

Query: 701  TFYSLASTMTGRLASLEPNLQN--IPIKTDL-----------------GQ------KIRR 735
            T     ++ TG  A L   L+   +P   +L                 GQ       +R+
Sbjct: 1647 TVLHQTNSDTGAGAVLLGLLRRCCVPRTHELRMLLKGTAREGDDVSASGQHRLLEANVRK 1706

Query: 736  AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-DIHRMVAAEIFGVNIEKVS 794
            AF++ P   L+ ADY  IELR++AH ++   L   F++   D  R++AA+  G  + +VS
Sbjct: 1707 AFVAAPGCVLLGADYRAIELRMMAHFSQDEKLLATFQDGQHDPFRLLAAKWLGKELGQVS 1766

Query: 795  PQMRRHAKTINFSII 809
               R+  K + + I+
Sbjct: 1767 QTDRQLIKHLQYGIM 1781


>gi|262212405|gb|ACY35819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 31/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLAR-------YDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK--- 833
              ++  +I  VN +K+    RR  KT+ ++ +YG    ++        S+ A   K   
Sbjct: 50  GDVLLNGDIHQVNADKIGIS-RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKE 108

Query: 834 ---RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N 
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNY 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 157 LLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|291335384|gb|ADD94998.1| DNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
          Length = 217

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 29/237 (12%)

Query: 745 LISADYSQIELRILAH-IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           ++ AD S IELR+LAH +A+       ++       ++  +I  +N +K+    RR  KT
Sbjct: 1   MVGADLSGIELRMLAHYLAR-------YDGGRYAKLLLEDDIHQINADKIGIS-RRQVKT 52

Query: 804 INFSIIYGISPFRLAT----QLRI--PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           + ++ +YG    ++      QL     + +  +    Y     G+ + ++  K    + G
Sbjct: 53  VTYAFLYGAGDEKIGHSYDPQLSTTAAKKKGKEIRAAYVDAVDGLDDLLKAIKQ-AAERG 111

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           ++ +I GR+++   ++SP           A+N  +Q  A  I +R M+   +++ + ++ 
Sbjct: 112 FIRSIDGRKVN---VDSPHK---------ALNYCLQSGAGVIAKRWMVINQETMREAQIC 159

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              L  IHDEL FE   E +   S  +V+S   A     N+R+ +       NNW E
Sbjct: 160 ASQLGFIHDELQFECAPEHVGDLSTSLVYSATAAG-EYYNMRIRIDAEATHGNNWSE 215


>gi|254505350|ref|ZP_05117498.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222436194|gb|EEE42876.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 126/300 (42%), Gaps = 34/300 (11%)

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           +N+ T RVH   +     TGR +  +PN+  +  K DL  ++R  + + P   L+  D  
Sbjct: 296 VNEETSRVHGAVNTIGAATGRCSHFKPNMAQVD-KKDL--RMRECWEARPGWDLVGVDAE 352

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            +ELR+LAH         +    L+  +    +   +N + V    R +AK + ++++YG
Sbjct: 353 GLELRMLAHYLGKFDGGALTRALLEGSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYG 412

Query: 812 ISPFRLATQLRIPRSEA------------ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
               +L   +     EA            A   K       G+ + ++K K+   +  Y+
Sbjct: 413 AGDVKLGQIIVDDAREAGINLKGNKKALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYI 472

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT- 918
           + + GRRI+          +R  +E +A N  +QG  A + ++A+I  H +   HK    
Sbjct: 473 QGLDGRRIY----------VR--SEHSAFNFLLQGGGAIVMKQALILFHFN-HSHKFGPY 519

Query: 919 ----KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                    +HDE+  E   +     ++ +   + +A     ++R PL     +  NW++
Sbjct: 520 GERWAYCANVHDEVQSETHPDISKAYAETLADCIREAG-EHFDMRCPLAGAYDIGKNWKD 578


>gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 593

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 126/300 (42%), Gaps = 34/300 (11%)

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           +N+ T RVH   +     TGR +  +PN+  +  K DL  ++R  + + P   L+  D  
Sbjct: 309 VNEETSRVHGAVNTIGAATGRCSHFKPNMAQVD-KKDL--RMRECWEARPGWDLVGVDAE 365

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            +ELR+LAH         +    L+  +    +   +N + V    R +AK + ++++YG
Sbjct: 366 GLELRMLAHYLGKFDGGALTRALLEGSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYG 425

Query: 812 ISPFRLATQLRIPRSEA------------ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
               +L   +     EA            A   K       G+ + ++K K+   +  Y+
Sbjct: 426 AGDVKLGQIIVDDAREAGINLKGNKKALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYI 485

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT- 918
           + + GRRI+          +R  +E +A N  +QG  A + ++A+I  H +   HK    
Sbjct: 486 QGLDGRRIY----------VR--SEHSAFNFLLQGGGAIVMKQALILFHFN-HSHKFGPY 532

Query: 919 ----KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                    +HDE+  E   +     ++ +   + +A     ++R PL     +  NW++
Sbjct: 533 GERWAYCANVHDEVQSETHPDISKAYAETLADCIREAG-EHFDMRCPLAGAYDIGKNWKD 591


>gi|18640489|ref|NP_570330.1| DNA polymerase [Synechococcus phage P60]
 gi|18478719|gb|AAL73268.1| DNA polymerase [Synechococcus phage P60]
          Length = 587

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 145/345 (42%), Gaps = 51/345 (14%)

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWR----QLSKIKSTYADSLPNHINKRTQRV 699
           +T  GQ K   + L +IN  ++     ILE +    QLS+ K+ +         +R  R+
Sbjct: 278 RTAGGQPKIDDEILREINTKESLAFARILELQKHLGQLSEGKNAWLKL------ERKGRL 331

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRIL 758
           H    L +T TGR A + PNL  +P   +      R+   P    L + +D S +ELR L
Sbjct: 332 HHSCVL-NTNTGRQAHMRPNLAQVPSAHEY-----RSLFKPSDNHLQVGSDASGLELRCL 385

Query: 759 AHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
            H        +  E  +  DIH  +A EI+G +        R+  K + + +IYG    +
Sbjct: 386 GHYLSRYDGGKFAEEVVNGDIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGNHK 436

Query: 817 LATQLRIPRSEAA-------DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           L       +S A+         I +    F  ++  I++      ++G ++ + GR I  
Sbjct: 437 LGLTAGASKSSASRKGQEIRGKIMQGLSGFADLNAAIQERA----KSGVLKGLDGRPIRL 492

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
              N            AA+N  +Q + A I +  +I  H+ L++  +    L  +HDE  
Sbjct: 493 QGKN-----------HAALNYLLQSAGAIICKLWVIRTHELLQEAGIDYYPLAFVHDEQQ 541

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             V  ++   A+Q+   +M K    ++  R  L    ++ N+W +
Sbjct: 542 LSVRADQAEMAAQLTTLAM-KDVEHQVKFRCALDSEYQIGNSWAD 585


>gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 565

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 167/418 (39%), Gaps = 76/418 (18%)

Query: 580 VSQMEITGI----QIDQDLLKQVSAEI------SKNLLSLEENIYDLSGEKFNLSSPKQL 629
            +++  TG+    +  +DLL+++  E        + L  L E I    G +     P ++
Sbjct: 185 AAELNATGLPWSAERHKDLLRELLGERYAGGGEPRGLAELAEEISRAFGRRVRPDLPAEV 244

Query: 630 GDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS- 687
                 +    +G K T T +W     +LE++   D+P +  +L +++L ++ + +  S 
Sbjct: 245 -----LRAFAEAGVKLTSTRRW-----ELEKV---DHPAVAPLLTYKKLYRVWTAHGWSW 291

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L + +  R  R    Y +   ++GR  +       IP      + +RRA ++ P  +L+ 
Sbjct: 292 LADWV--REGRFRPRYVVGGAVSGRWTTAGGGALQIP------KVVRRAVVADPGWRLVV 343

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD +Q+E RILA +A  T L  V   + D++  V+   F  +        R  AK     
Sbjct: 344 ADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAFAGD--------RDRAKIAVLG 395

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            IYG +              + D +K       RFP    Y+++      +   V T  G
Sbjct: 396 AIYGQT--------------SGDGLKNLAALRRRFPKAVAYVDEAARAGEEGRLVRTWLG 441

Query: 865 R-------------RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
           R              I  ++  +P  S      R   N  +QG+AAD T   + ++ + L
Sbjct: 442 RTCPPLGGEVQEEAGIPQEDEPAPSPSASRARGRFTRNFVVQGAAADWTLLLLAALRREL 501

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVNI 966
             H    +++   HDE++   P  E      +I  +  +A   C     LRVP    I
Sbjct: 502 --HTRKAELVFFQHDEVIVHAPASEAAEIPALITEAAREATRVCFGDTPLRVPFTTAI 557


>gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6]
 gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6]
          Length = 645

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 145/353 (41%), Gaps = 86/353 (24%)

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH--INKRTQRVHTFYSLASTMTGRLA 714
           +EQ N  D+ + + +L  +QL+K       ++ N+  ++ R + +  FY   +  TGR A
Sbjct: 270 IEQTN--DDKLKEVLLLRQQLAKSSVRKYQAMQNYACLDNRARGLFQFY--GANRTGRFA 325

Query: 715 SLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLI 746
                LQN+P                            +   L + IR AFI  P  K I
Sbjct: 326 GRGIQLQNLPQNHMSDLAEARELVRNGEYELLALLYDNVPEVLSELIRTAFIPKPGMKFI 385

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTI 804
            +D+S IE R++A +A      +VF N  DI+   A+++FGV +EK  V+  +R+  K  
Sbjct: 386 VSDFSAIEARVIAWLAGEKWRKEVFRNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIA 445

Query: 805 NFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYI-------------- 846
             ++ YG S   L    A  + +   E    +  +    P I +                
Sbjct: 446 ELALGYGGSVGALTAMGALNMGLTEDELQPLVASWRETNPAITKLWWDIDSAAKGCVSVG 505

Query: 847 EKTK----NFVRQNG--YVETIFGRRIHY-------DEINSPKSSIRNIN-----ERAAI 888
            KT+     F  ++G  +++ + GRR+ Y       +       +   +      ER   
Sbjct: 506 AKTETHGITFEYKSGFMFIQLLSGRRLAYVKPRIGQNRFGGAAVTYEGVGTTKKWERLES 565

Query: 889 NAP------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             P      +Q  A DI   AM    ++L+D+++       +HDE++ EVP+E
Sbjct: 566 YGPKFVENIVQAMARDILCFAM----QNLKDYRIVG----HVHDEVIIEVPKE 610


>gi|167933046|ref|ZP_02520133.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [candidate division TM7 single-cell isolate TM7b]
          Length = 132

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132
           R  I P YKA R   P     Q+P++     AFG P  E   +EADDI+ T + +AE+ G
Sbjct: 34  RLNILPTYKAGRKTPPSDFFNQIPILHDLLDAFGWPLYEFDDYEADDIMGTISLMAEQHG 93

Query: 133 FAVTIISTDKDLMQLVSPTTCLY 155
               ++++D D++QLVSP T +Y
Sbjct: 94  IETCLVTSDLDMLQLVSPLTKVY 116


>gi|316934307|ref|YP_004109289.1| 5'-3' exonuclease [Rhodopseudomonas palustris DX-1]
 gi|315602021|gb|ADU44556.1| 5'-3' exonuclease, SAM-fold domain [Rhodopseudomonas palustris
           DX-1]
          Length = 238

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 66/146 (45%), Gaps = 17/146 (11%)

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
            V FR  I P YKANR    + L     L R        P+ E  G EADDI+  +    
Sbjct: 56  GVNFRYSIDPTYKANRKGTRKPLAYNEVLKRTKDIW---PSFEFPGLEADDILGIF---G 109

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
            +E  A  I S DKD+  +  P T L+D  K +KID       W        C Q L GD
Sbjct: 110 SREPDAAIICSADKDMKTI--PCT-LWDGSKLQKID--RATADW------WFCYQTLVGD 158

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNL 214
           + D  PG+PG+G K A  +L   G +
Sbjct: 159 TADGYPGVPGVGPKKAQAILGPVGKM 184


>gi|134288333|ref|YP_001110496.1| 5'-3' exonuclease [Burkholderia vietnamiensis G4]
 gi|134132983|gb|ABO59693.1| 5'-3' exonuclease [Burkholderia vietnamiensis G4]
          Length = 323

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 120/286 (41%), Gaps = 36/286 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           H  L+DG+S  Y   Y+  L S+   G+ V AI+G    +     + R       F ++ 
Sbjct: 5   HFMLIDGNSVGYANQYSHTLTSQ---GMQVQAISGTLRSI-----SRRIREYPDFFPIVL 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLP------QLPLVRLATQAFGIPAIEIQGFEADD 119
                 +R ++Y DYK+NR K             Q P +R+  +  G+  I     EADD
Sbjct: 57  WDGRAQWRFDLYADYKSNRLKSESSRAARAAYEKQQPYLRIMAEKLGLTQIVAPCAEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI----DIE-HVIKKWGI 174
           +      I    G  V  +++D + +Q         D   ++ I    D+E HV      
Sbjct: 117 VGYQLALILLSMGHKVLFVTSDTEWLQGYQEGLSWLDPKTDKFIASASDMEAHVGTS--- 173

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL---INASRIKQKKRRE 231
            P   +  +AL GD+ D I G+P IG  TA  +  ++G   +       A ++  KK+  
Sbjct: 174 DPRAYIEAKALAGDTSDTIAGVPRIGITTALKVFAQFGGSMDAFYAHAEAGKVDLKKKTL 233

Query: 232 NILEYAET-ARLSRKLVMLR-------TDVPITI---PLEHLILED 266
           N L  AE  A  +R + ++        T+  I +   P++H++  D
Sbjct: 234 NSLASAEGRAIFARNMKLMDLAAAPKLTESEIVVSREPVDHIVFTD 279


>gi|182437857|ref|YP_001825576.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466373|dbj|BAG20893.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 558

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 140/347 (40%), Gaps = 72/347 (20%)

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMT 710
           T   +LE++   D+P ++ ++ +++L +I + +  S L + +  R  R    Y    T++
Sbjct: 244 TRRWELEEL---DHPAVEPLIAYKKLYRIWTAHGWSWLQDWV--REGRFRPEYQPGGTVS 298

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR  +       IP      + IR+A ++ P  +L+ AD  Q+E R+LA I++   L +V
Sbjct: 299 GRWTTNGGGALQIP------KVIRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEV 352

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             +  D+++ ++   F  +        R HAK      IYG +              + D
Sbjct: 353 AGHDGDLYKALSDRAFSGD--------REHAKLAMLGAIYGQT--------------SGD 390

Query: 831 YIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            +K       RFP    Y++       +   V T  GR        SP ++    +E A 
Sbjct: 391 GLKNLAALRRRFPLAVAYVDDAARAGEEGRVVRTWLGR-------TSPPAASAGQDEEAG 443

Query: 888 I---------NAP----------------IQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           +          AP                +QGSAAD     + ++ +++ +  L  +++ 
Sbjct: 444 LPQEDPEGSGGAPDGGPARARGRFTRNFVVQGSAADWALLMLAALRRTIFEQGLRAQLVF 503

Query: 923 QIHDELVFEVPEEEITTASQIIVHSME---KACLPKINLRVPLKVNI 966
             HDE++   P EE     + I  + E   +    +  +R P    +
Sbjct: 504 FQHDEVIVHCPAEESAAVVEAIRAAGELAGRTAFGRTPVRFPFTTAV 550


>gi|56752739|gb|AAW24581.1| SJCHGC05886 protein [Schistosoma japonicum]
          Length = 191

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 32/185 (17%)

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA+QL I    A   I  + + + GI ++I  T +   + G ++T+ G       +NS K
Sbjct: 6   LASQLNISEKSAQKLIDGFLNIYTGIQKFITTTVSTAHREGQIKTLNGHIRLLPALNS-K 64

Query: 877 SSIRNIN---------------------ERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           S    ++                     ER A+N+ IQGSAA+I + AM++V +++    
Sbjct: 65  SIFSCVSANEFSCNWSKKQRNHFAVTKAERQAVNSIIQGSAAEIAKLAMLAVDEAISSAN 124

Query: 916 LA--TKMLLQIHDELVFEV-PEEEITTASQIIVHSME---KACLPKINLRVPLKVNIKVS 969
           +    +++L  HDEL++E+ PE  +     +I  +M    K C    N+ VPL V +K+ 
Sbjct: 125 IPGYARLVLHEHDELIYEIFPESSVKQFGVLIRQAMSSTGKYC----NINVPLPVKLKIG 180

Query: 970 NNWQE 974
            NW +
Sbjct: 181 PNWSD 185


>gi|262212385|gb|ACY35809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 31/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLAR-------YDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK--- 833
              ++  +I   N +K+    RR  KT+ ++ +YG    ++        S+ A   K   
Sbjct: 50  GDVLLNGDIHQENADKIGIS-RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKE 108

Query: 834 ---RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N 
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRITCD------------GPHKALNY 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 157 LLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens
           FD-1]
          Length = 654

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           +G L +++   ++IP    L Q IR AFI P  KK + AD+S IE R+++ +A  T   +
Sbjct: 360 SGDLDAVKERFEDIP--DVLSQLIRTAFIPPEGKKFVVADFSAIEARVISWLAGETWRME 417

Query: 770 VFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
            F N  DI+   AA++FGV +EK  V+  +R+  K    +  YG S
Sbjct: 418 AFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGS 463


>gi|124800751|ref|XP_001349551.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium falciparum 3D7]
 gi|23503355|gb|AAC71825.2| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium falciparum 3D7]
          Length = 577

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT-------VKEEKIDIEHVI-KKWGIPPEK 178
           I +K+ F V ++S+DKDL+QL+      Y+         K+ ++   H+  ++  I P +
Sbjct: 401 IDKKKKFRVIVVSSDKDLLQLLEYNNETYNMDISICQPNKKYRLVNSHLFYEEHEILPSQ 460

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                 LTGD  D I G+P IG KT+  LL+EY N+ENIL N  ++  K      L   E
Sbjct: 461 YSDYLILTGDKTDGISGVPYIGDKTSKCLLKEYHNIENILKNLHKLPSKLHHI-FLNNIE 519

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
                RKL+ L+ +       E L+ +D    R+ +F +   F
Sbjct: 520 NINTFRKLIKLKCETN-----ESLVFDDYKQKRIKNFEQFRNF 557



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 10/119 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             +VDGSS +++ F+  P L   +D + ++ I GF   L K+        + ++ A+IFD
Sbjct: 110 FLIVDGSSILFKNFFGMPFLKNDND-VNLSTIYGFIQSLNKIYN----LFLPTYIAIIFD 164

Query: 67  YPAVTFRNE---IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             + T  N+   IY +YK  R K P+ L  QL +V       GI  I     E+DD IA
Sbjct: 165 --SKTSNNDKKKIYANYKIFRRKNPDELYEQLKIVSNFCDTIGIKTISSTNIESDDYIA 221


>gi|307190034|gb|EFN74248.1| DNA polymerase theta [Camponotus floridanus]
 gi|307190035|gb|EFN74249.1| DNA polymerase theta [Camponotus floridanus]
          Length = 158

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 12/118 (10%)

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           LL+ +  ++  ++ +++ ME++GI I+   L+++S   S  + SLE   YDL+G KFN S
Sbjct: 51  LLYAFREIEMKIVIILACMELSGIGINIKSLQELSLVTSNEMQSLETKAYDLAGRKFNFS 110

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           SPK++G +L           +K  +  T+   LE+    DNPI   ++ WR+LS  K+
Sbjct: 111 SPKEVGQVL---------GLSKDKKVSTSKAVLEKC---DNPISNLVISWRKLSATKT 156


>gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK115]
          Length = 645

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 132/322 (40%), Gaps = 68/322 (21%)

Query: 705 LASTMT--GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           LA T+   G+L +L+    N+P    L + IR AF+     + I AD++ IE R+LA ++
Sbjct: 341 LARTLVKDGQLKALDLLYDNVP--NVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLS 398

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL--- 817
             T   +VFE   DI+   AA +FGV +EK  V+  +R+  K    ++ YG S   L   
Sbjct: 399 GETWRLEVFEQGGDIYCASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAM 458

Query: 818 -ATQLRIPRSEAADYIKRYFHRFPGIHEY---IEKTKNFVRQNG-----------YVETI 862
            A  + +   E    + ++    P I  +   I+K    V +             Y   +
Sbjct: 459 GALDMGLDEEELQPLVNQWRMANPHIVAFWWVIDKASKEVYETREPQKVGNLLLYYQAGM 518

Query: 863 F------GRRIHY-------DEINSPKSSIRNINE-----RAAINAP------IQGSAAD 898
           F      GR++ Y       +    P  +   I E     R     P      +QG A D
Sbjct: 519 FFIALPSGRKLAYVKPRMELNAFGKPGLTYEGIGENKKWSRIDTYGPKLVENIVQGIARD 578

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC-----L 953
           +    M+ + K   D      ++L +HDE V EV E E          S+E+ C     L
Sbjct: 579 LLAHGMMQLQKQELD------IVLHVHDEAVVEVKEGEA---------SVEEVCQLFATL 623

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
           P     +PL+ +      +Q++
Sbjct: 624 PDWAEGLPLRADGYACQFYQKD 645


>gi|262342311|gb|ACY54666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 33/218 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP-LYQVFENSL 775
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+     Y     S 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLSG 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK-- 833
           DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K  
Sbjct: 57  DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGK 107

Query: 834 ----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
                Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N
Sbjct: 108 EIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALN 155

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 156 YLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|262212397|gb|ACY35815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 33/218 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP-LYQVFENSL 775
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+     Y+    + 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYRDVLLNG 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK-- 833
           DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K  
Sbjct: 57  DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAAIAKGK 107

Query: 834 ----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
                Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N
Sbjct: 108 EIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALN 155

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 156 YLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|32442289|gb|AAP82215.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 136/313 (43%), Gaps = 38/313 (12%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
            +PKL+ +KL+  Y + D  +    S+  +T  + D+  +K  S E       + + + D
Sbjct: 121 FKPKLVDDKLVTPYVKKDGEL----SKRGMTDEEYDR-CIKTQSVEPF-----MRQKLVD 170

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW---KTTAQDLEQINCGDNPIIKNIL 672
                FNL S KQ+G+ L      P    T TGQ    + T + +E I   +  +I + L
Sbjct: 171 -----FNLGSRKQIGEYLIDFGWIPK-KFTPTGQPIVDEGTLKKIEHIR--EAKLIADFL 222

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQ 731
            +++     ++  D L      +  RVH       T+TGR+    PN+  +P   +  G+
Sbjct: 223 LYQKRIAQVTSRIDEL------KDDRVHGSVIPNGTITGRMTHRNPNMAQVPNAGSPYGK 276

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           + R  +  P  +KL+  D S +ELR+LAH     P Y        I  +V  +I   N  
Sbjct: 277 ECRSCWTIPEGRKLVGIDASGLELRMLAHYMN-DPEY--------IEEVVNGDIHTTNQN 327

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
               + R  AKT  ++++YG    ++ +       +  +  + +F   P +    EK + 
Sbjct: 328 LAGLKTRDQAKTFIYALVYGAGDAKIGSVAGGGLKKGKELKQTFFKNLPSLKNLKEKVQK 387

Query: 852 FVRQNGYVETIFG 864
              + GY++ + G
Sbjct: 388 -ASERGYLKGLDG 399


>gi|207110463|ref|ZP_03244625.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 103

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADY 750
           +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+   +  L+  DY
Sbjct: 4   LKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDY 63

Query: 751 SQIELRILAHIAK 763
           SQIELR+LAH ++
Sbjct: 64  SQIELRLLAHFSQ 76


>gi|262342099|gb|ACY54560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 98/219 (44%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA----- 829
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A     
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 830 DYIKR-YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             I+R Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRRAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262212403|gb|ACY35818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVAYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIGANQLAFIHDE 193


>gi|326778493|ref|ZP_08237758.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
 gi|326658826|gb|EGE43672.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
          Length = 558

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 140/347 (40%), Gaps = 72/347 (20%)

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMT 710
           T   +LE++   D+P ++ ++ +++L +I + +  S L + +  R  R    Y    T++
Sbjct: 244 TRRWELEEL---DHPAVEPLIAYKKLYRIWTAHGWSWLQDWV--REGRFRPEYQPGGTVS 298

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR  +       IP      + IR+A ++ P  +L+ AD  Q+E R+LA I++   L +V
Sbjct: 299 GRWTTNGGGALQIP------KVIRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEV 352

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             +  D+++ ++   F  +        R HAK      +YG +              + D
Sbjct: 353 AGHDGDLYKALSDRAFSGD--------REHAKLALLGAVYGQT--------------SGD 390

Query: 831 YIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            +K       RFP    Y++       +   V T  GR        SP ++    +E A 
Sbjct: 391 GLKNLAALRRRFPLAVAYVDDAARAGEEGRVVRTWLGR-------TSPPAASAGQDEEAG 443

Query: 888 I---------NAP----------------IQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           +          AP                +QGSAAD     + ++ +++ +  L  +++ 
Sbjct: 444 LPQEDPEGSGGAPDGGPARARGRFTRNFVVQGSAADWALLMLAALRRTIFEQGLRAQLVF 503

Query: 923 QIHDELVFEVPEEEITTASQIIVHSME---KACLPKINLRVPLKVNI 966
             HDE++   P EE     + I  + E   +    +  +R P    +
Sbjct: 504 FQHDEVIVHCPAEESAAVVEAIRAAGELAGRTAFGRTPVRFPFTTAV 550


>gi|262342271|gb|ACY54646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEVRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262212411|gb|ACY35822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 41/219 (18%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-- 775
           PNL  +P  +DL    RR F++ P + ++ AD S IELR+LAH       Y  F ++L  
Sbjct: 1   PNLAQVP--SDL--TYRRLFMATPGQVMVVADLSGIELRMLAHYLARYDTY--FGDNLLN 54

Query: 776 -DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA---TQLRIP---RSEA 828
            DIH+        +N +K+    R+  KT+ ++ +YG    ++     +L  P   +++ 
Sbjct: 55  GDIHQ--------INADKIGIS-RKLVKTVCYAFLYGAGLEKIGYSYDRLLSPQKAKAKG 105

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +  + +    PG+ E +   K+   + G+V+ I GR+I    ++SP           A+
Sbjct: 106 REIKEAFIEAIPGLSELLGAVKSAANR-GFVKGIDGRKI---LVDSPHK---------AL 152

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  I +R M+  H    D+      L  IHDE
Sbjct: 153 NYLLQGSAGVIAKRWMVIAH----DNNYCASQLAFIHDE 187


>gi|262212363|gb|ACY35798.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212401|gb|ACY35817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212413|gb|ACY35823.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212415|gb|ACY35824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342105|gb|ACY54563.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342275|gb|ACY54648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342277|gb|ACY54649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342281|gb|ACY54651.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342287|gb|ACY54654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342291|gb|ACY54656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342293|gb|ACY54657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342297|gb|ACY54659.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342301|gb|ACY54661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342307|gb|ACY54664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|225388910|ref|ZP_03758634.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
 gi|225045019|gb|EEG55265.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
          Length = 67

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 44/63 (69%)

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F + +++V+P  RR+AK +NF I+YGIS F L+  L I R EA +YI +YF  +PG+  
Sbjct: 1   MFHIPLDQVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEAVEYINKYFETYPGVKT 60

Query: 845 YIE 847
           +++
Sbjct: 61  FLD 63


>gi|262342149|gb|ACY54585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +    D     R  FI+ PT KL+ +D + IELR+ AH +A+       ++    
Sbjct: 1   PNLAQVSSDKD----CRELFITNPTWKLVDSDLAGIELRLFAHYLAR-------YDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ------LRIPRSEAAD 830
              ++  +I  VN EK+    RR  KTI +  +YG    +L         L   + + A+
Sbjct: 50  AKILLEQDIHQVNAEKIGIS-RRQVKTITYCFLYGGGDQKLGLSFDNMLPLDKAKKKGAE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + ++ T+  V + G +  I  R+I  D+            E  A+N 
Sbjct: 109 IRRAYMDAIPGLEDLVKDTRR-VAERGSIRAIDKRQIIVDK------------EHKALNC 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSAA + +R ++   + L       +    IHDE
Sbjct: 156 LLQGSAAVVAKRWLLLTDQDLRMSMFNHERYAFIHDE 192


>gi|167565000|ref|ZP_02357916.1| DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 619

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 129/333 (38%), Gaps = 51/333 (15%)

Query: 673 EWRQLSK--IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           +W QL+    K+       +H ++   RVH + +    +TGR+    PN  NI       
Sbjct: 305 QWTQLASPPKKNGTGGGWIHHADE-NHRVHGYVNSNGAVTGRMTHSRPNSANID------ 357

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           +++R  +I     K +  D   +ELR+LAH        ++    LD  + +  +   VN 
Sbjct: 358 KEMRHIWIPSMGMKQVGCDAEGLELRVLAHYLARYDGGRLTRQLLDGDKALGTDAHSVNR 417

Query: 791 EKVSPQMRRHAKTINFSIIYG----------ISPFRLA--------------TQLRIPRS 826
           +      R  AKT+ +  +YG          I+ +R +               +L+  ++
Sbjct: 418 DNTDLFSRDGAKTLLYGSLYGAGDEKAGNIWIADWRTSGKPVSEWPVWCHVRGKLKTAKA 477

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
                  +      G  + I+  +   +  G+++ I GRR            IR  +  A
Sbjct: 478 IGRVVKAKLLDGIVGFRKLIKDIETAAKSRGWLKGIDGRR------------IRVRHAHA 525

Query: 887 AINAPIQGSAADITRRAMISVHKSLED-----HKLATKMLLQIHDELVFEVPEEEITTAS 941
           A+N  +QG+ A I ++A+   H  + +     H +    L  +HDE+  E   +      
Sbjct: 526 ALNTLLQGTGAIIMKKALAIYHAEITEIHGLVHGVHFGYLANVHDEVQQECLPQYAELIG 585

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +++ KA     N R  L     + NNW E
Sbjct: 586 TTFKNAITKAG-EHWNFRCRLDGAFDIGNNWHE 617


>gi|262342283|gb|ACY54652.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 835 ------YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQVYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|47934668|gb|AAT39772.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 7/160 (4%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN  S  Q+GD L  +L +     T+TG+ K     LE I   D P  + I E+  + K
Sbjct: 56  EFNPGSRLQIGDRL-QELGWKPKQFTETGKAKVDETILESI---DLPEAQLIAEYLMIQK 111

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFI 738
            +    DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F 
Sbjct: 112 -RVGLIDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFT 170

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
                +LI  D S IELR LAH  +  P +Q    + DIH
Sbjct: 171 VEDGNRLIGCDLSGIELRCLAHYMQ-DPEWQEELLNGDIH 209


>gi|47934688|gb|AAT39782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 7/160 (4%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN  S  Q+GD L  +L +     T+TG+ K     LE I   D P  + I E+  + K
Sbjct: 56  EFNPGSRLQIGDRL-QELGWKPKQFTETGKAKVDETILESI---DLPEAQLIAEYLMIQK 111

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFI 738
            +    DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F 
Sbjct: 112 -RVGLIDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFT 170

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
                +LI  D S IELR LAH  +  P +Q    + DIH
Sbjct: 171 VEDGNRLIGCDLSGIELRCLAHYMQ-DPEWQEELLNGDIH 209


>gi|47934690|gb|AAT39783.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934692|gb|AAT39784.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934700|gb|AAT39788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934702|gb|AAT39789.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 7/160 (4%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN  S  Q+GD L  +L +     T+TG+ K     LE I   D P  + I E+  + K
Sbjct: 56  EFNPGSRLQIGDRL-QELGWKPKQFTETGKAKVDETILESI---DLPEAQLIAEYLMIQK 111

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFI 738
            +    DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F 
Sbjct: 112 -RVGLIDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFT 170

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
                +LI  D S IELR LAH  +  P +Q    + DIH
Sbjct: 171 VEDGNRLIGCDLSGIELRCLAHYMQ-DPEWQEELLNGDIH 209


>gi|262342269|gb|ACY54645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342289|gb|ACY54655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342317|gb|ACY54669.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342319|gb|ACY54670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342323|gb|ACY54672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342325|gb|ACY54673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|262212399|gb|ACY35816.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342299|gb|ACY54660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  + +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVVAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262212359|gb|ACY35796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVAYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|47934672|gb|AAT39774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934674|gb|AAT39775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934676|gb|AAT39776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934678|gb|AAT39777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934680|gb|AAT39778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934686|gb|AAT39781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934694|gb|AAT39785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 7/160 (4%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN  S  Q+GD L  +L +     T+TG+ K     LE I   D P  + I E+  + K
Sbjct: 56  EFNPGSRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAI---DLPEAQLIAEYLMIQK 111

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFI 738
            +    DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F 
Sbjct: 112 -RVGLIDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFT 170

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
                +LI  D S IELR LAH  +  P +Q    + DIH
Sbjct: 171 VEDGNRLIGCDLSGIELRCLAHYMQ-DPEWQEELLNGDIH 209


>gi|153840366|ref|ZP_01993033.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149745971|gb|EDM57101.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 166

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ + +D+  
Sbjct: 4   SAVTIDRSQYETILDEASFNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFA-IDEGI 62

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V   ++D      +D          +L  LK   E++   K+G N+KYD  VL R
Sbjct: 63  AAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLAR 113

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           YGI M+G + D ML SYV +S    HD+ S+A ++L ++
Sbjct: 114 YGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHS 152


>gi|47934660|gb|AAT39768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNL+S KQ+ + L   L +     T+ GQ       LE I   D P  K I E+  L K 
Sbjct: 57  FNLASRKQIAERLMG-LGWTPTKHTEKGQPIVDEGTLEDI---DIPQAKLIAEYLMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS   H++K T RVH       T+TGR+A   PNL  +P +    G++IR  +  
Sbjct: 112 RVGMIDSWLKHVDKTTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKPYGEEIRSLWTV 171

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
                L+ +D S +ELR L+H  +     +   N  DIH
Sbjct: 172 DEGNVLVGSDLSGVELRCLSHYMQDEEWQEELLNG-DIH 209


>gi|330883874|gb|EGH18023.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 108

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 51/81 (62%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P++ V++ +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG 
Sbjct: 2   IEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGV 61

Query: 632 ILFTKLKFPSGAKTKTGQWKT 652
           IL+ KL  P  +KT TGQ  T
Sbjct: 62  ILYEKLGMPILSKTATGQAST 82


>gi|256786957|ref|ZP_05525388.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289770851|ref|ZP_06530229.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289701050|gb|EFD68479.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 493

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 162/406 (39%), Gaps = 89/406 (21%)

Query: 598 VSAEISKNLLSLEENIY-----DLSGEKF-NLSSPKQLGDIL------FTKLKFP----- 640
           V+AE+++  L    +++     DL GE++     P++L ++       F +   P     
Sbjct: 99  VAAEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRVRPDLPAD 158

Query: 641 -----SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINK 694
                  A  K G   T   +LE +   D+P +K ++E+++L +I   +  S L + +  
Sbjct: 159 VVKAFGQAGVKVG--STRRWELESL---DHPAVKPLIEYKKLYRIWVAHGWSWLQDWV-- 211

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           R  R    +    T+TGR  +       IP      + IRRA ++ P  +L+ AD  Q+E
Sbjct: 212 RDGRFRPEFLAGGTVTGRWVTNGGGGLQIP------KVIRRAVVADPGWRLVVADADQME 265

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            R+LA I++   L +V     D+++ V+   F  +        R  AK      +YG + 
Sbjct: 266 PRVLAAISRDPGLMEVAGRETDLYQSVSDRAFSGD--------RDQAKLAVLGAVYGQT- 316

Query: 815 FRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFGRRI---- 867
                        + D +K       RFP    Y++       +   V T  GR      
Sbjct: 317 -------------SGDGLKNLAALRRRFPRAVAYVDDAARAGEEGRLVRTWLGRTCPPAA 363

Query: 868 ----HYDEINSPKSSIRNINERA------------------AINAPIQGSAADITRRAMI 905
                 +E   P+    +  +RA                  A N  +QGSAAD     + 
Sbjct: 364 GAADGTEEAGLPQDEAADAGDRAQEWVPGYASTNARARGRFARNFVVQGSAADWALLLLA 423

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           ++ ++  D  +A +++   HDE++   PEEE  T    I  + E A
Sbjct: 424 ALRQTCAD--MAAELVFFQHDEVIVHCPEEEAATVVAAIRDAAELA 467


>gi|47934682|gb|AAT39779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 7/160 (4%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN  S  Q+GD L  +L +     T+TG+ K     LE I   D P  + I E+  + K
Sbjct: 56  EFNPGSRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAI---DLPEAQLIAEYLMIQK 111

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFI 738
            +    DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F 
Sbjct: 112 -RVGLIDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFT 170

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
                +LI  D S IELR LAH  +  P +Q    + DIH
Sbjct: 171 VEDGNRLIGCDLSGIELRCLAHYMQ-DPEWQEELLNGDIH 209


>gi|219815953|gb|ACL37076.1| truncated DNA polymerase I [uncultured bacterium]
 gi|219815954|gb|ACL37077.1| truncated DNA polymerase I [uncultured bacterium]
          Length = 282

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 19/186 (10%)

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRP-KIPE------------MLLPQL 95
           +Q+ R+        +  D  + ++R  + P YK NR  K  E                Q 
Sbjct: 44  VQSLRRSYHCDKLVIAGDMGSSSYRKALSPIYKQNRKDKFAEQTEQEAAEFEAFFAEVQG 103

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT---IISTDKDLMQLVSPTT 152
            LVR   +A   P +   G EADDI A Y  +++++ F ++   +IS+D+D   LV+   
Sbjct: 104 ILVRYEEEA-TYPLLRFPGVEADDI-AAYI-VSKRKQFNLSQIWLISSDRDWDLLVAQGV 160

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
             +  V  +++ +++    +    E+ + ++ L GDS DN+ G+PGIG K AA L+ +YG
Sbjct: 161 SRFSYVTRKEVTLDNWSTHYDFTQEEYISIKCLMGDSGDNVIGVPGIGPKKAAQLVLDYG 220

Query: 213 NLENIL 218
           +  +I+
Sbjct: 221 SAYDII 226


>gi|262212387|gb|ACY35810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEADQLAFVHDE 193


>gi|270627023|ref|ZP_06221947.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270317629|gb|EFA29059.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 81

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 47/73 (64%)

Query: 154 LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
           L +T+    +D E VI+K+GIPPE ++   AL GDS DNIPG+ G+G KTA  LLQ  G+
Sbjct: 7   LINTMNNSLLDREGVIEKYGIPPELIIDYLALMGDSADNIPGVAGVGEKTALGLLQGIGS 66

Query: 214 LENILINASRIKQ 226
           +  I  N  ++ +
Sbjct: 67  MAEIYANLEKVAE 79


>gi|111223189|ref|YP_713983.1| putative DNA polymerase I [Frankia alni ACN14a]
 gi|111150721|emb|CAJ62422.1| putative DNA polymerase I [Frankia alni ACN14a]
          Length = 669

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 56/294 (19%)

Query: 665 NPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           +P +  +L WR+  +I +TY    L  H+     R+   +  +    GR+ + +  L N+
Sbjct: 362 HPAVAALLAWRRTERIATTYGHRWLDTHVGP-DGRLRGAWHGSDGAAGRM-TAQAGLHNL 419

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P        +R A ++ P +  + AD  QIE R+LA +    P       + D++  VAA
Sbjct: 420 PAD------LRCAVVAEPGRVFVRADLGQIEPRVLA-VVSADPALAAATQADDMYAPVAA 472

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           ++          + R HAK    + +YG +              A + ++R    +P   
Sbjct: 473 QLG---------RDRAHAKVAMLAAMYGQT-----------TGAAGEALRRMRRAYPTAL 512

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK--------------------SSIRNIN 883
            Y++      R    + T  GR +       P                      ++  + 
Sbjct: 513 AYLDAADAAGRSGRDLRTYGGRLVRLAPAAGPPDRAAGPPRGLTDPAPPDEASPAVGGVT 572

Query: 884 ERA----AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           E+A    A NA IQG AA++ +   ++V   L    L  +++L +HDEL+  VP
Sbjct: 573 EQARGRFARNAVIQGPAAELFKAWAVTVRAELP--ALGGEIVLCLHDELLLHVP 624


>gi|262212377|gb|ACY35805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R  F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRELFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|148724470|ref|YP_001285436.1| DNA polymerase [Cyanophage Syn5]
 gi|145588115|gb|ABP87934.1| DNA polymerase [Synechococcus phage Syn5]
          Length = 583

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 122/293 (41%), Gaps = 53/293 (18%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELR 756
           RVH    L +T TGR A + PNL  +P  ++      RA   P   ++ + AD S +ELR
Sbjct: 326 RVHHSCVL-NTNTGRQAHMRPNLAQVPSASEY-----RALFGPGDSRVQVGADASGLELR 379

Query: 757 ILAHIAKITPLYQVFENSL--------DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            LAH   + P    F+N          DIH  +A+ I+G +        R+  K + + +
Sbjct: 380 CLAHY--LAP----FDNGSFAETVVNGDIHTELAS-IYGTD--------RKSGKGVTYCL 424

Query: 809 IYGISPFRLATQLRIPRSEAA-------DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           IYG    +L +     +++A+         I R    F  + + + +      + G +  
Sbjct: 425 IYGGGDHKLGSTAGASKAQASKKGKEIRGRIMRDLDGFAALSDAVSRRA----RTGVLRG 480

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           + GR I                  AA+N  +Q + A I ++ ++  ++ L++  +    L
Sbjct: 481 LDGRPIRLQG-----------KSHAALNYLLQSAGAVICKQWLLRSYELLDEANIDYWPL 529

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +HDEL   V   +   A+ +I  +M K     +  R  L    +  N+W +
Sbjct: 530 AFVHDELQISVAPSQAEMATLLITAAM-KDVQHNLKFRCELDSEAQTGNSWAD 581


>gi|47097719|ref|ZP_00235222.1| 5'-3' exonuclease family protein [Listeria monocytogenes str.
          1/2a F6854]
 gi|47013904|gb|EAL04934.1| 5'-3' exonuclease family protein [Listeria monocytogenes str.
          1/2a F6854]
          Length = 96

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 7/97 (7%)

Query: 2  QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
          +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  
Sbjct: 3  ENRENLLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGVQGFMRHMFAAI----RQSNP 58

Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL 95
          +H  + +D  + TFRNE+Y  YKA R   PE ++PQ 
Sbjct: 59 THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQF 95


>gi|309386062|gb|ADO66949.1| DNA polymerase type I [Enterococcus faecium]
          Length = 83

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDII 
Sbjct: 2   VAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDIIG 61

Query: 123 TYTYIAEKEGFAVTIISTDKDL 144
           T     +K+ F V ++S D+DL
Sbjct: 62  TLAEKVDKDQFDVVVLSGDRDL 83


>gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes]
 gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes]
 gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 651

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 134/354 (37%), Gaps = 74/354 (20%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------- 724
           +Q +K   +   ++ N + K  +    F    +  TGR A     LQN+P          
Sbjct: 293 QQAAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEA 352

Query: 725 -----------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
                             +  L Q IR AF+    KK I  D+S IE R+L+H+A     
Sbjct: 353 RELFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWR 412

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL----ATQL 821
            +VFE   DI+ M A+++FGV +EK   + ++R+  K    +  YG S   L    A  +
Sbjct: 413 SKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDM 472

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR-----------QNGYVET----IF--- 863
            +   E    +  +    P I  Y     N V+           QN   E     +F   
Sbjct: 473 GLSEEELQPLVNSWRQANPNIVLYWWDVDNAVKTAVKELLPTSTQNIQFEVKSGILFITL 532

Query: 864 --GRRIHY------------DEINSPKSSIRNINERAAINAP--IQGSAADITRRAMISV 907
             GR++ Y            + +    +      ER     P  ++     I+R  +   
Sbjct: 533 PSGRKLAYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFS 592

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVP-EEEITTASQIIVHSMEKACLPKINLRV 960
            K L D K+       +HDE++ E P E+++   + ++   +    L  INLR 
Sbjct: 593 MKQLNDFKIVG----HVHDEVIIECPIEQKLDEVASLM--GIAPYWLSDINLRA 640


>gi|32442279|gb|AAP82210.1| DNA polymerase [Podovirus SOG]
          Length = 406

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 28/265 (10%)

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ-WKTTAQDLEQINCGDNPIIKNILEW 674
           ++ E+FNL SP Q+   L  +L +    KTK+G  +K   ++L  I       +K +  W
Sbjct: 155 IAWEEFNLGSPVQVNKRL-DRLDWKPTVKTKSGNSYKICPENLATIPDTAPEAVKGLKAW 213

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------- 724
           + L        + L    ++ T RVH    L   +T R A   PN+ NIP          
Sbjct: 214 KVLETRWKLAQEWLQK--SQETGRVHGRVILTGAVTHRAAHQGPNMANIPSVPHGKDGIL 271

Query: 725 --IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
             ++   G + R+AF  P  K L+  D + I+LR+LAH     P+Y          +++ 
Sbjct: 272 WKMEGMYGAECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMN-DPIY--------TEQVID 322

Query: 783 AEIFGVNIEKVS--PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            +I   N E +    + R  AKT  ++ + G     +A+ L     +A + +  ++   P
Sbjct: 323 GDIHTFNKEALGRFCKDRPTAKTFIYAFLLGAGTGMIASILGCNNRQANEAMSNFYEAIP 382

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGR 865
            + + ++   +     G+++ + GR
Sbjct: 383 ALKK-LKSQASQAASMGWIKGLDGR 406


>gi|297476119|ref|XP_002688485.1| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
 gi|296486338|gb|DAA28451.1| polymerase (DNA directed) nu [Bos taurus]
          Length = 158

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 4/113 (3%)

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLL 922
           GRR     I +    +R   ER A N  +QGSAAD+ + AMI +  ++     L  ++L 
Sbjct: 2   GRRRPLPRIRAHDPQLRAQAERQAANFVVQGSAADLCKMAMIRIFTAMATSPTLTARLLA 61

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEK-ACLP--KINLRVPLKVNIKVSNNW 972
           QIHDEL+FEV + ++   + ++  +ME    +P  ++ L+VPLKV++    +W
Sbjct: 62  QIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKVSLSAGRSW 114


>gi|262212371|gb|ACY35802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 31/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLAR-------YDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK--- 833
              ++  +I   N +K     RR  KT+ ++ +YG    ++        S+ A   K   
Sbjct: 50  GDVLLNGDIHQENADKTGIS-RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKE 108

Query: 834 ---RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N 
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNY 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 157 LLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|32141203|ref|NP_733604.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|24413788|emb|CAD55317.1| putative DNA polymerase I [Streptomyces coelicolor A3(2)]
          Length = 563

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 161/406 (39%), Gaps = 89/406 (21%)

Query: 598 VSAEISKNLLSLEENIY-----DLSGEKF-NLSSPKQLGDIL------FTKLKFP----- 640
           V+AE+++  L    +++     DL GE++     P++L ++       F +   P     
Sbjct: 169 VAAEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRVRPDLPAD 228

Query: 641 -----SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINK 694
                  A  K G   T   +LE +   D+P +K ++E+++L +I   +  S L + +  
Sbjct: 229 VVKAFGQAGVKVG--STRRWELESL---DHPAVKPLIEYKKLYRIWVAHGWSWLQDWV-- 281

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           R  R    +    T+TGR  +       IP      + IRRA ++ P  +L+ AD  Q+E
Sbjct: 282 RDGRFRPEFLAGGTVTGRWVTNGGGGLQIP------KVIRRAVVADPGWRLVVADADQME 335

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            R+LA I++   L +V     D+++ V+   F  +        R  AK      +YG + 
Sbjct: 336 PRVLAAISRDPGLMEVAGRETDLYQSVSDRAFSGD--------RDQAKLAVLGAVYGQT- 386

Query: 815 FRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFGRRI---- 867
                        + D +K       RFP    Y++       +   V T  GR      
Sbjct: 387 -------------SGDGLKNLAALRRRFPRAVAYVDDAARAGEEGRLVRTWLGRTCPPAA 433

Query: 868 ----HYDEINSPKSSIRNINERA------------------AINAPIQGSAADITRRAMI 905
                 +E   P+       +RA                  A N  +QGSAAD     + 
Sbjct: 434 GAADGTEEAGLPQDEPAGAGDRAQEWVPGYASTNARARGRFARNFVVQGSAADWALLLLA 493

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           ++ ++  D  +A +++   HDE++   PEEE  T    I  + E A
Sbjct: 494 ALRQTCAD--MAAELVFFQHDEVIVHCPEEEAATVVAAIRDAAELA 537


>gi|229472433|gb|ACQ72731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F   P + ++ AD S IELR+LAH +A+       +++   
Sbjct: 1   PNLAQVPSDG----RFRELFKPTPGQVMVGADLSGIELRMLAHYLAR-------YDSGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++   L      +  +++ ++
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKQVKTVTYAFLYGAGDVKIGKSLDSSLSDKKAKAKGSE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             K Y     G+ + +   K+     G+V+ I  R+I  D            +   A+N 
Sbjct: 109 IRKAYVSAIDGLGDLLAAVKS-AGDRGFVKAIDQRKILVD------------SSHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSAA + +R M+   +++E  KL    L  +HDE
Sbjct: 156 LLQGSAAVLAKRWMLINQQTIEQTKLCCSQLAFVHDE 192


>gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 356

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 32/151 (21%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------------------------- 724
           + RT+ +  FY   +  TGR A     LQN+P                            
Sbjct: 17  DHRTRGMFQFY--GANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIGDYDSLSMLYDD 74

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           I   L Q IR AFI+ P  K   AD+S IE R++AH+A  +    VF+N  DI+   A++
Sbjct: 75  IPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKNGGDIYCASASQ 134

Query: 785 IFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           +F V +EK  ++  +R+  K    ++ YG S
Sbjct: 135 MFHVTVEKHGINGHLRQKGKIAELALGYGGS 165


>gi|262342147|gb|ACY54584.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342267|gb|ACY54644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F +      + AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVTVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|255928521|gb|ACU42136.1| gp59 [Mycobacterium phage UncleHowie]
          Length = 619

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 160/379 (42%), Gaps = 57/379 (15%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIY--DLSGEKFNLSSPK--QLGDILFTKLKFPS- 641
           GI +D++ L +       N ++ E+ IY  DL+    +  + K  +L   L  + + P  
Sbjct: 265 GINVDREYLDRY-----LNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLAERGELPQP 319

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST--YADSLPNHINKRTQRV 699
             +T  G  + T  DLE +    NP+ K  L    L+ I+ T  Y   +       T R 
Sbjct: 320 WPRTPKGALRATKADLEALAT-VNPLAKAQL---SLANIEKTLGYLSKVSTQ-AAVTGRC 374

Query: 700 HT-FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           H    +L ++ TGR++   P LQ  P       K  R  +      L S D+SQIE   +
Sbjct: 375 HPQVATLGASATGRMSYGSPELQQFP-------KDARPILCDDGDGLTSIDWSQIEPVTM 427

Query: 759 AHIAKITPLYQVFENSLDIHR--MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           A++A+       +E   D++   M+AA   G++        R  +K +  S +YG    +
Sbjct: 428 ANMARDIDFLAAYEAGEDLYGPIMLAA---GID--------RPTSKVVLLSSMYGSGIAK 476

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA  +       A   ++ F       +++ K +    Q G V T  GR +  DE    K
Sbjct: 477 LAALIGHTEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGGIFK 536

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP--- 933
                     A+N  +QGSA D+    ++ +++      +  ++ L +HDE+V   P   
Sbjct: 537 ----------AVNYTVQGSAYDVLANTIVEMYR----RGMTDELYLAMHDEVVVSTPVAA 582

Query: 934 --EEEITTASQIIVHSMEK 950
             +E ++T  + ++   E+
Sbjct: 583 EVQEIMSTPPEFLIRWAER 601


>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1429

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 128/297 (43%), Gaps = 25/297 (8%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISAD 749
            I  R  RVH    + +T T R  S  P+ QNIP   D    +RR F+S      + +  D
Sbjct: 1063 ILHRDGRVHQHIDMTATTTSRTVSAYPSCQNIP--KDDKSSVRRLFVSRFGSKGRCVEVD 1120

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----------QMRR 799
            YSQ+E+ +LA +     L +   + +D H   AA   G+  +++            ++R+
Sbjct: 1121 YSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRK 1180

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY--IEKTKNFVRQNG 857
             AK  +F  +YG     L     IP  +    I+R    +PGI ++  I ++      N 
Sbjct: 1181 TAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNP 1240

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL---EDH 914
             + T F   +      S ++    +N     N PIQG  A++ +  +  +++     + +
Sbjct: 1241 GLPTSFIAEMPTGLRMSLRTRDVVLNLPPIKNYPIQGYGAELAQMMLGRLYRHFVRKDFY 1300

Query: 915  KLATKMLLQIHDELVF----EVPEEEITTASQII--VHSMEKACLPKINLRVPLKVN 965
            K    ++  +HD +      +V  E +T   +I+  VH       P + + VPL+V+
Sbjct: 1301 KDRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSVHEYVPKVFPGVKISVPLQVS 1357


>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5]
 gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            infantum JPCM5]
          Length = 1430

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 125/300 (41%), Gaps = 31/300 (10%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISAD 749
            I  R  RVH    + +T T R  S  P+ QNIP   D    +RR F+S      + +  D
Sbjct: 1064 ILHRDGRVHQHIDMTATTTSRTVSAYPSCQNIP--KDDKSSVRRLFVSRFGSKGRCVEVD 1121

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----------QMRR 799
            YSQ+E+ +LA +     L +   + +D H   AA   G+  +++            ++R+
Sbjct: 1122 YSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRK 1181

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY--IEKTKNFVRQNG 857
             AK  +F  +YG     L     IP  +    I+R    +PGI ++  I ++      N 
Sbjct: 1182 TAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNP 1241

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL------ 911
             + T F   +      S ++    +N     N PIQG  A++ +  +  +++        
Sbjct: 1242 GLPTSFIAEMPTGLRMSLRTRDVVLNLPPIKNYPIQGYGAELAQMMLGRLYRHFVRKDFY 1301

Query: 912  EDHKLATKMLLQIHDELVF----EVPEEEITTASQII--VHSMEKACLPKINLRVPLKVN 965
            ED          +HD +      +V  E +T   +I+  VH       P + + VPL+V+
Sbjct: 1302 EDRAFLINF---VHDSVWMDCHVDVLRECVTDTCRILGSVHEYVPKVFPGVKISVPLQVS 1358


>gi|47934684|gb|AAT39780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 7/160 (4%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN  S  Q+GD L  +L +     T+TG+ K     LE I   D P  + I E+  + K
Sbjct: 56  EFNPGSRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAI---DLPEAQLIAEYLMIQK 111

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFI 738
            +    DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F 
Sbjct: 112 -RVGLIDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFT 170

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
                +LI  D S IELR LAH  +  P +Q    + DIH
Sbjct: 171 VEDGNRLIGCDLSGIELRCLAHHMQ-DPEWQEELLNGDIH 209


>gi|332522757|ref|ZP_08399009.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
 gi|332314021|gb|EGJ27006.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
          Length = 653

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 136/359 (37%), Gaps = 84/359 (23%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------- 724
           +Q +K   +   ++ N + K  +    F    +  TGR A     LQN+P          
Sbjct: 295 QQAAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEA 354

Query: 725 -----------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
                             +  L Q IR AF+    KK I  D+S IE R+L+H+A     
Sbjct: 355 RDLFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWR 414

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL----ATQL 821
            +VFE   DI+ M A+++FGV +EK   + ++R+  K    +  YG S   L    A  +
Sbjct: 415 SKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDM 474

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR------------------QNG--YVET 861
            + + E    +  +    P I  Y     N V+                  ++G  ++  
Sbjct: 475 GLSKEELQPLVNSWRLANPNIVLYWWDVDNAVKTAVKELIPTSTHGIQFEVKSGILFITL 534

Query: 862 IFGRRIHY------------DEINSPKSSIRNINERAAINAP--IQGSAADITRRAMISV 907
             GR++ Y            + +    S      ER     P  ++     I+R  +   
Sbjct: 535 PSGRKLAYIKPRIGDNQFGGESVTYEGSGTAKRWERLESYGPKFVENIVQAISRDILAFS 594

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPE----EEITTASQIIVHSMEKA--CLPKINLRV 960
            K L+D ++       +HDE++ E  +    E+I T        M KA   +P INLR 
Sbjct: 595 MKQLKDFRIVG----HVHDEIIIECDQSQNLEQIATL-------MGKAPYWMPDINLRA 642


>gi|262212367|gb|ACY35800.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212379|gb|ACY35806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT  ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTATYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|255927583|gb|ACU41205.1| gp59 [Mycobacterium phage Colbert]
          Length = 619

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 160/379 (42%), Gaps = 57/379 (15%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIY--DLSGEKFNLSSPK--QLGDILFTKLKFPS- 641
           GI +D++ L +       N ++ E+ IY  DL+    +  + K  +L   L  + + P  
Sbjct: 265 GINVDREYLDRY-----LNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLAERGELPQP 319

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST--YADSLPNHINKRTQRV 699
             +T  G  + T  DLE +    NP+ K  L    L+ I+ T  Y   +       T R 
Sbjct: 320 WPRTPKGALRATKADLEALAT-VNPLAKAQL---SLANIEKTLGYLSKVSTQ-AAVTGRC 374

Query: 700 HT-FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           H    +L ++ TGR++   P LQ  P       K  R  +      L S D+SQIE   +
Sbjct: 375 HPQVATLGASATGRMSYGSPELQQFP-------KDARPILCDDGDGLTSIDWSQIEPVTM 427

Query: 759 AHIAKITPLYQVFENSLDIHR--MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           A++A+       +E   D++   M+AA   G++        R  +K +  S +YG    +
Sbjct: 428 ANMARDIDFLAAYEAGEDLYGPIMLAA---GID--------RPTSKVVLLSSMYGSGIAK 476

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA  +       A   ++ F       +++ K +    Q G V T  GR +  DE    K
Sbjct: 477 LAALIGHTEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGGIFK 536

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP--- 933
                     A+N  +QGSA D+    ++ +++      +  ++ L +HDE+V   P   
Sbjct: 537 ----------AVNYTVQGSAYDVLANTIVEMYR----RGMTDELYLAMHDEVVVSTPVAA 582

Query: 934 --EEEITTASQIIVHSMEK 950
             +E ++T  + ++   E+
Sbjct: 583 EVQEIMSTPPEFLIRWAER 601


>gi|297538972|ref|YP_003674741.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
 gi|297258319|gb|ADI30164.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
          Length = 515

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 117/243 (48%), Gaps = 33/243 (13%)

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           ST+T R+    P +QN      L ++ R  FI+   + L   DY Q E+ I+A ++K   
Sbjct: 277 STVTSRMYYKNPTVQN------LAKRYRDIFIADNDRTLSYVDYDQFEIGIMAALSKDKK 330

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L +++ N+ DI++  + EIFG          R  +K +  +  YG++   L   ++    
Sbjct: 331 LEEIYSNT-DIYKKFSLEIFG------DEGKRSISKKLFLAFTYGMTHVNLLEAVK-QHG 382

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN--- 883
              +  + +F +F    E+    +    +NG + T+FG        N  ++ +  ++   
Sbjct: 383 GDKEVARLFFDQFAVFIEWRVGIEKLFLENGRISTLFGN-------NLERTGVGELSFKE 435

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE-LVFEVPEEEITTASQ 942
           +R+ ++  +QG+ + I ++A++ + K  E      ++L+ +HD  LV  +P  +I   S+
Sbjct: 436 KRSCVSHVVQGTGSLIFKKALLELSKDSE-----IEILIPMHDAVLVQHLPAYDI---SK 487

Query: 943 IIV 945
           II+
Sbjct: 488 III 490


>gi|258655373|ref|YP_003204529.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
 gi|258558598|gb|ACV81540.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
          Length = 550

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 128/322 (39%), Gaps = 52/322 (16%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P ++ +L +++L ++ +    +       R  R H  Y   + ++GR A+       I
Sbjct: 248 DHPAVRPVLAYKELVRLHTANGWAWLEQW-VRGNRFHAEYLSGAVVSGRWATRGGGALQI 306

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      + +R+A ++ P  +LI AD +Q+E R+LA I+    + Q      D++  +AA
Sbjct: 307 P------RVLRQAVVADPGYRLIVADAAQLEPRVLAAISADL-VLQAISAEDDLYAGLAA 359

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           + FG N        R  AK      +YG +             E    +     R+P   
Sbjct: 360 DGFGGN--------RAAAKVAMLGAMYGQT-----------TGEGGRLVSTLRARYPQAM 400

Query: 844 EYIEKTKNFVRQNGYVETIFGR------------RIHYDEINSPKSSIRNINERAAI--- 888
            Y++       +   V ++ GR            RI   +  +P    R + +R A    
Sbjct: 401 GYVDGAARAGERGEVVHSVLGRACPPPGTSWEAVRIGRQQDATPAE--RTLADRLAGDRG 458

Query: 889 ----NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
               N  +Q SAAD     +  +  SL +   A  +  Q HDEL+   PE      + +I
Sbjct: 459 RFTRNFVVQASAADWAAVWLAGLRTSLTEVAGAELVFFQ-HDELIVHAPEPVAEPVAGLI 517

Query: 945 VHSMEKA---CLPKINLRVPLK 963
             + + A     P   ++ P++
Sbjct: 518 EDAADAARRLVFPGSAVQTPVR 539


>gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
 gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
          Length = 658

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 166/429 (38%), Gaps = 90/429 (20%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI  D  L+KQ     +     L +   +L+G + N +SP Q+   +  +L     + TK
Sbjct: 210 GIGTDLILIKQAIECDTNYTERLTKAAIELTGLE-NPNSPTQIKKWIGERLGREVKSLTK 268

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQL-SKIKSTYADSLPNHINK--RTQRVHTFY 703
           T    +    +E+    +   +  +LE RQL +K      D++ N   K  R + +  FY
Sbjct: 269 T----SIPGLIEEATSLNKSEVIKMLELRQLMAKTSIKKYDTMQNARCKDGRVRGLLQFY 324

Query: 704 SLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRR 735
              +  TGR A     +QN+P                            +   L Q IR 
Sbjct: 325 --GANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGKFQEVEFLFDSVPDTLSQLIRT 382

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE--KV 793
           AFI     + I +D+S IE R++A  A       VF     I+   A+++F V IE  K 
Sbjct: 383 AFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFKVAIESIKK 442

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLR---IPRSEAADYIKRYFHRFPGIHEYI---- 846
             ++R+  K    ++ YG S   L++  R   IP  E    +K + +  P I ++     
Sbjct: 443 GSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEELPGLVKSWRNANPNITKFWWDVD 502

Query: 847 EKTKNFVRQNGYV-----------------------------------ETIFGRRIHYDE 871
           +  K  +R+   V                                   ET  G +I Y+ 
Sbjct: 503 KAAKKVIRERTTVNLQYGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFSGDKITYEG 562

Query: 872 INSPKSSIRNINERAA--INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
           +       + I+      +   +Q ++ D  R AM  V K+  D      +++ +HDE+V
Sbjct: 563 MEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYD------IVMHVHDEVV 616

Query: 930 FEVPEEEIT 938
            ++P++  T
Sbjct: 617 LDIPKDRAT 625


>gi|229472475|gb|ACQ72752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R  FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVD----CRSLFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
           + ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + ++ 
Sbjct: 51  NILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D   SP           A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGRKILVD---SPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVLAKRWLLVTHDRLQG--IEHERYAFIHDE 191


>gi|255021929|ref|ZP_05293938.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254968634|gb|EET26187.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 323

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 28/242 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            +  +DG++  Y + Y TP LSR  HDG P   I G    + ++ +    E++     V+
Sbjct: 3   QILAIDGNNIGYASMY-TPALSRLSHDGQPTGGILGLVQSVIRIAKRY-PEAVP---IVL 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLL------PQLPLVRLATQAFGIPAIEIQGFEAD 118
           +D  A  +R E+ P+YK NR   P+ +        Q P   L     G+  +     EAD
Sbjct: 58  WDGHA-AWRKELCPEYKENRRDRPDKVAVAESWKRQQPWANLFLLQMGVLQMRAPDAEAD 116

Query: 119 DIIATYTYIAEKEGFA------VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHV-IKK 171
           D+     +  E+  FA      +T++S D D  Q +S     +  + + ++ +  +   K
Sbjct: 117 DLAGRLAFAHER--FADFGIDGMTLVSGDTDWWQALSRHVTWFTPITDGEMTLADLQTDK 174

Query: 172 WGIPP----EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI--LINASRIK 225
               P    E+ +  +A+ GD  DNIPG+  +G  TA  LL+ +  L+ I   + + R K
Sbjct: 175 AKDGPFSGIEEYLLAKAMAGDPSDNIPGVQRVGIPTALKLLRLHEGLDGIAAAVASGRAK 234

Query: 226 QK 227
            K
Sbjct: 235 DK 236


>gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
 gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
          Length = 649

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 116/263 (44%), Gaps = 49/263 (18%)

Query: 586 TGIQIDQDLLKQVSA--EISKN-LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +GI++D D +KQ  A  EIS   L+   + I +L     N +S +Q+ D L       +G
Sbjct: 210 SGIKVDMDFVKQAIAMNEISHTKLMDQMQEITELD----NPNSVQQMKDWLSD-----NG 260

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPI-IKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVH 700
            +T T   K  A+ L+     D P  +  +L+ RQ L+K       ++ N +    +   
Sbjct: 261 LETDTLGKKAVAELLK-----DAPEHLAEVLKLRQQLAKSSVKKYTAMENAVCSDGRIRG 315

Query: 701 TFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQK 732
            F  L +  TGR +S    LQN+P                            I   L Q 
Sbjct: 316 MFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARSIVKNGDSEALELLYEDIPDTLSQL 375

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AF+     K I AD+S IE R+L+ +A      +VF N  DI+   A+++F V +EK
Sbjct: 376 IRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFANGGDIYCASASQMFRVPVEK 435

Query: 793 --VSPQMRRHAKTINFSIIYGIS 813
             V+  +R+  K    ++ YG S
Sbjct: 436 HGVNAHLRQKGKIAELALGYGGS 458


>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1430

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 125/300 (41%), Gaps = 31/300 (10%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISAD 749
            I  R  RVH    + +T T R  S  P+ QNIP   D    +RR F+S      + +  D
Sbjct: 1064 ILHRDGRVHQHIDMTATTTSRTVSAYPSCQNIP--KDDKSSVRRLFVSRFGSKGRCVEVD 1121

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----------QMRR 799
            YSQ+E+ +LA +     L +   + +D H   AA   G+  +++            ++R+
Sbjct: 1122 YSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRK 1181

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY--IEKTKNFVRQNG 857
             AK  +F  +YG     L     IP  +    I+R    +PGI ++  I ++      N 
Sbjct: 1182 TAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNP 1241

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL------ 911
             + T F   +      S ++    +N     N PIQG  A++ +  +  +++        
Sbjct: 1242 GLPTSFIAEMPTGLRMSLRTRDVVLNLPPIKNYPIQGYGAELAQMMLGRLYRHFVRRDFY 1301

Query: 912  EDHKLATKMLLQIHDELVF----EVPEEEITTASQII--VHSMEKACLPKINLRVPLKVN 965
            ED          +HD +      +V  E +T   +I+  VH       P + + VPL+V+
Sbjct: 1302 EDRAFLINF---VHDSVWMDCHVDVLRECVTDTCRILGSVHEYVPKVFPGVKISVPLQVS 1358


>gi|262212383|gb|ACY35808.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                 +
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKVL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262342123|gb|ACY54572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M    +SL    +    L  IHDE
Sbjct: 155 NYLLQSSAGVIAKRWMQLTDESLRQGSIEANQLAFIHDE 193


>gi|262212361|gb|ACY35797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 35/218 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           N  +Q SA  I +R M+   +SL    +    L  IHD
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHD 192


>gi|262342115|gb|ACY54568.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 41/219 (18%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-- 775
           PNL  +P  +DL    RR F++ P + ++ AD S IELR+L+H       Y  F ++L  
Sbjct: 1   PNLAQVP--SDL--TYRRLFMATPGQVMVGADLSGIELRMLSHYLARYDTY--FGDNLLN 54

Query: 776 -DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIK 833
            D+H++        N +K+    R+  KT+ ++ +YG    ++     R+  S+ A    
Sbjct: 55  GDVHQL--------NTDKIGIT-RKLVKTVTYAFLYGAGNEKIGYSYDRLLSSQKAKAKG 105

Query: 834 R-----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           R     +    PG+ + +   K+   + G+V+ I GR+I  D   SP           A+
Sbjct: 106 REIKEAFIEAIPGLSDLLSAVKSAANR-GFVKGIDGRKILVD---SPHK---------AL 152

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +R M+  +    D+      L  IHDE
Sbjct: 153 NYLLQGSAGVVAKRWMVIAN----DNPFCCSQLAFIHDE 187


>gi|229472321|gb|ACQ72675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R  FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDAD----CRELFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + A+ 
Sbjct: 51  DILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+   +E  K   + +  +  I GR+I    +NSP           A+N  
Sbjct: 110 RRAYLDAIPGLERLVEAVKTKAKVDRSLRAIDGRKIL---VNSPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R ++  H  L+D  +  +    IHDE
Sbjct: 158 LQSSAGVIAKRWLLITHDRLQD--IEHERYAFIHDE 191


>gi|47934696|gb|AAT39786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 7/160 (4%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN  S  Q+GD L  +L +     T+TG+ K     LE I   D P  + I E+  + K
Sbjct: 56  EFNPGSRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAI---DLPEAQLIAEYLMIQK 111

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFI 738
            +    DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F 
Sbjct: 112 -RVGLIDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFT 170

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
                +LI  D S IELR LAH  +  P +Q    + DIH
Sbjct: 171 VEDGNRLIGCDLSGIELRRLAHYMQ-DPEWQEELLNGDIH 209


>gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes]
 gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 651

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 29/168 (17%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------- 724
           +Q +K   +   ++ N + K  +    F    +  TGR A     LQN+P          
Sbjct: 293 QQAAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEA 352

Query: 725 -----------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
                             +  L Q IR AF+    KK I  D+S IE R+L+H+A     
Sbjct: 353 RELFGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWR 412

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
            +VFE   DI+ M A+++FGV +EK   + ++R+  K    +  YG S
Sbjct: 413 SKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGS 460


>gi|229472425|gb|ACQ72727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 29/201 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R  FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVD----CRSLFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
           + ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + ++ 
Sbjct: 51  NILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D   SP           A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKETGSIRSIDGRKILVD---SPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLE 912
           +Q SA  + +R ++  H  L+
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQ 178


>gi|229472449|gb|ACQ72739.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472451|gb|ACQ72740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472479|gb|ACQ72754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R  FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVD----CRSLFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
           + ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + ++ 
Sbjct: 51  NILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D   SP           A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGRKILVD---SPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQG--IEHERYAFIHDE 191


>gi|262342295|gb|ACY54658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                 +
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKVL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 155 NYLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|229472441|gb|ACQ72735.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 34/218 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP-LYQVFENSL 775
           PNL  +P   +     R+ F + P   ++ AD + IELR+LAH +A+     Y     + 
Sbjct: 1   PNLAQVPSDAEF----RQLFTATPGLVMVGADLAGIELRMLAHYLARYDEGRYADILLNG 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA----TQL--RIPRSEAA 829
           DIH+  A +I G++        RR  KT+ ++ +YG    +L      QL  +  + +  
Sbjct: 57  DIHQENADKI-GIS--------RRQVKTVTYAFLYGAGDAKLGRSYDPQLAEKEAKRKGK 107

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +  + Y    PG+ + +   K+   + GY+    GRR   D                A+N
Sbjct: 108 EIRQAYMDAVPGLEKLVSAVKSKA-ECGYINLCDGRRCSVD------------GSHKALN 154

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +QGSA  I +R M   H+S+    +  K L  +HDE
Sbjct: 155 YLLQGSAGVIAKRWMALTHESIYRSNIEAKQLAFVHDE 192


>gi|313760827|gb|ADR79390.1| DNA polymerase [T7-like bacteriophage Eptesicus
           fuscus/P1/IT/USA/2009]
          Length = 713

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 118/315 (37%), Gaps = 53/315 (16%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-GQKIRRAFISPPTKK-------- 744
           K   RVH   +    +TGR     PN+  +P    L G+  R AF +   KK        
Sbjct: 413 KSDGRVHGSINPCGAVTGRATHSSPNMAQVPANGKLHGETCRGAFGAHHNKKDGKPDPWI 472

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEI-FGVNI-----EKVSPQ 796
            +  D S +ELR L H A      +  EN L  DIH   A       N+     +     
Sbjct: 473 QVGVDASGLELRCLGHFAAPYDGGEYAENVLNGDIHWTNAVNAGLAPNVPRDKEDHYHDA 532

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI-------------- 842
            R +AKT  ++ +YG    ++ + +     E  +  K++    P I              
Sbjct: 533 CRNNAKTFIYAFLYGAGAAKIGSIVGGHAKEGKELTKKFMEGTPAIKSLREGIASALVSS 592

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++       +  +++ + GR++H   + SP S         A+N  +Q + A I ++
Sbjct: 593 EKWVDGEMQVKWKRRWLKGLDGRKVH---VRSPHS---------ALNTLLQSAGALICKK 640

Query: 903 AMISVHKSL--------EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
            ++ V K++         D   A   +  +HDEL      +EI      I   + +A   
Sbjct: 641 WIVEVEKAMIAAGYKHGWDGDFA--YMAWVHDELQIACRTQEIAEHCVQIAQDVMRAVGE 698

Query: 955 KINLRVPLKVNIKVS 969
               R  L    K+ 
Sbjct: 699 HFKFRCQLDTEGKIG 713


>gi|156122488|gb|ABU50235.1| DNA polymerase [Synechococcus phage S-CBP42]
          Length = 588

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 43/288 (14%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+H    L +T TGR A ++PNL  +P     G + R  F     +  + AD S +ELR 
Sbjct: 331 RIHHSCVL-NTNTGRQAHMKPNLAQVPS----GHEYRELFHPGANRSQVGADASGLELRC 385

Query: 758 LAH-IAKITP---LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           L H +A+        +V +   DIH  +A EI+G +        R+  K + + +IYG  
Sbjct: 386 LGHYLARFDGGKFAKEVVQG--DIHTALA-EIYGTD--------RKSGKGVTYCLIYGGG 434

Query: 814 PFRLATQLRIPRSEAADYIKRYFHR-------FPGIHEYIEKTKNFVRQNGYVETIFGRR 866
             +L       +++A    K    R       F  ++  +++      ++G ++ + GR 
Sbjct: 435 DSKLGLTAGASKAQAVKKGKEIRSRIMANLDGFAALNAAVQERA----KSGVLKGLDGRP 490

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           I     N            AA+N  +Q + A I +  ++  ++ L++  +    +  +HD
Sbjct: 491 IRLQGKN-----------HAALNYLLQSAGAVICKLWLLRSYELLDEAGIDYFPMAFVHD 539

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+   V   +   A Q+I  +M K    +I  R  L    ++ N+W +
Sbjct: 540 EVHISVAPSQAEQAGQLIQIAM-KDVEHQIKFRCALDSEYQIGNSWAD 586


>gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis]
 gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 651

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 29/168 (17%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------- 724
           +Q +K   +   ++ N + K  +    F    +  TGR A     LQN+P          
Sbjct: 293 QQAAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEA 352

Query: 725 -----------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
                             +  L Q IR AF+    KK I  D+S IE R+L+H+A     
Sbjct: 353 RELFGTGDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWR 412

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVS--PQMRRHAKTINFSIIYGIS 813
            +VFE   DI+ + A+++FGV +EK     ++R+  K    +  YG S
Sbjct: 413 SKVFEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGS 460


>gi|229472455|gb|ACQ72742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R  FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDAD----CRELFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + ++ 
Sbjct: 51  DILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D   SP           A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGRKILVD---SPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQG--IEHERYAFIHDE 191


>gi|229472387|gb|ACQ72708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 29/201 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R  FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVD----CRSLFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + ++ 
Sbjct: 51  DILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D   SP           A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKETGSIRSIDGRKILVD---SPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLE 912
           +Q SA  + +R ++  H  L+
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQ 178


>gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
          Length = 655

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 168/431 (38%), Gaps = 94/431 (21%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAK 644
           GI  D  L+KQ     +     L +    L+G + N +SP Q+   +  +L  +  S  K
Sbjct: 207 GIDTDLILIKQAIECDTNYTERLTKAAIKLTGLE-NPNSPTQIKKWIGERLGREVKSLTK 265

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL-SKIKSTYADSLPNHINK--RTQRVHT 701
           T        A+DL +     + +IK +LE RQL +K      D++ N   K  R + +  
Sbjct: 266 TSIPGLIEEAKDLNK-----SEVIK-MLELRQLMAKTSIKKYDTMQNARCKDGRVRGLLQ 319

Query: 702 FYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKI 733
           FY   +  TGR A     +QN+P                            +   L Q I
Sbjct: 320 FY--GANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGKFEEVEFLFDSVPDTLSQLI 377

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-- 791
           R AFI     + I +D+S IE R++A  A       VF     I+   A+++F V IE  
Sbjct: 378 RTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFKVPIESI 437

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLR---IPRSEAADYIKRYFHRFPGIHEYI-- 846
           K   ++R+  K    ++ YG S   L++  R   IP  E    +K + +  P I ++   
Sbjct: 438 KKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEELPGLVKSWRNANPNITKFWWD 497

Query: 847 --EKTKNFVRQNGYV-----------------------------------ETIFGRRIHY 869
             +  K  +R+   V                                   ET  G +I Y
Sbjct: 498 VDKAAKKAIRERTTVNLQYGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFSGDKITY 557

Query: 870 DEINSPKSSIRNINERAA--INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           + +       + I+      +   +Q ++ D  R AM  V+K   D      +++ +HDE
Sbjct: 558 EGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYD------IVMHVHDE 611

Query: 928 LVFEVPEEEIT 938
           +V ++P++  T
Sbjct: 612 VVLDIPKDRAT 622


>gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
 gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
          Length = 656

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 122/287 (42%), Gaps = 42/287 (14%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GIQ+D DL++   A   ++   L E    ++G    L++P     +L T +   S  K +
Sbjct: 205 GIQLDMDLVRGALAIDDQHKTELVEKAIQITG----LTNPNSRNQLL-TWINDNSDLKLE 259

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI--NKRTQRVHTFYS 704
               +T A+ L+     ++ + + +   R L+K   +  +S+ N +  + R + V  FY 
Sbjct: 260 KLTKETVAESLQ---IAEDQVAEVLHIRRALAKSSISKYESMKNAVCADGRIRGVLQFY- 315

Query: 705 LASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRA 736
             +  TGR A     +QN+P                            I T L   IR A
Sbjct: 316 -GANRTGRWAGRLVQVQNLPHDVPVAMDTAIRLVKNGNARGVKLMYGHISTSLSHLIRAA 374

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VS 794
           F++P    L  +D+S IE R+L+ +A       VF    DI+   A+ +FGV +EK  ++
Sbjct: 375 FVAPEGSLLCVSDFSAIEARVLSWLADEKWRQDVFAKGGDIYCASASSMFGVPVEKHGIN 434

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
             +R+  K    ++ Y   P  L T   + +    D +    HR+ G
Sbjct: 435 GHLRQKGKVAELALGYQGGPPALITMGALKQGLTEDELPDIVHRWRG 481


>gi|229472487|gb|ACQ72758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R  FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVD----CRSLFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + ++ 
Sbjct: 51  DILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D   SP           A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKEAKEAGSIRSIDGRKILVD---SPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQG--IEHERYAFIHDE 191


>gi|329114048|ref|ZP_08242812.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696587|gb|EGE48264.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 542

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 31/229 (13%)

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKIT 765
            + T R+    P+LQNIP       K  R+ IS  T  KL   D+ Q E+ I+A ++   
Sbjct: 284 GSRTSRVQLRSPSLQNIP-------KRYRSIISARTGAKLCYVDFDQFEVGIMAALSGDE 336

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL---ATQLR 822
            L +++    D++ + A    G+         R+ AK +  S  YG+S   L   A  L 
Sbjct: 337 ELKRLYAAG-DMYDLFANTHLGL------VNNRKAAKQLFLSYAYGMSRKALIDAAYSLG 389

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R +A +   R F R+      I       +  G V T+ G   HY  I   K  +   
Sbjct: 390 VERQKAKEAF-RLFQRYEDWKRSIWAE---FQGTGRVATVLGN--HYRRIG--KGQLSGK 441

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            +R+A++  +QG+A+ I +RA+++V  S++D     K++L +HD L+FE
Sbjct: 442 EQRSAVSQVVQGTASLIFKRALLAV-ASIDD----VKVVLPMHDALLFE 485


>gi|229472535|gb|ACQ72782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P     G + R+ F + P   ++ AD + IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVP----HGDEFRKLFRATPGMVMVGADLAGIELRMLAHYLAR-------WDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR-- 834
              ++  +I   N +K+    RR  KT+ ++ +YG    ++   L   +S +AD  K+  
Sbjct: 50  GDVLINGDIHQENADKIGIS-RRLVKTVTYAFLYGAGDQKIG--LSYDQSLSADKAKKKG 106

Query: 835 ------YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 +    PG+ + +E TK    + GY+  I GR I  D   SP  S         +
Sbjct: 107 QEIRQAHMDAIPGLQDLVEATKKAANR-GYIRAIDGRHISVD---SPHKS---------L 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q SA  I +R +   H+++    +    L  IHDE
Sbjct: 154 NYLLQSSAGVIAKRWLALTHEAIIRADIEAHQLAFIHDE 192


>gi|17570813|ref|NP_523322.1| gene 5B protein [Enterobacteria phage T3]
 gi|579192|emb|CAA35141.1| 5B [Enterobacteria phage T3]
 gi|17384297|emb|CAC86285.1| gene 5B protein [Enterobacteria phage T3]
          Length = 372

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 47/306 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 83  KIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 142

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 143 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGF 196

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I               +++   +    
Sbjct: 197 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKW 256

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 257 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 304

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L          +  IHDE+      EEI      +     +      N R  L    K+
Sbjct: 305 GLKHGWDGDFAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEHWNFRCLLDTEGKM 364

Query: 969 SNNWQE 974
             NW+E
Sbjct: 365 GANWKE 370


>gi|255928280|gb|ACU41897.1| gp60 [Mycobacterium phage Puhltonio]
          Length = 619

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 159/382 (41%), Gaps = 63/382 (16%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIY--DLSGEKFNLSSPKQ------LGDILFTKLK 638
           GI +D++ L +   +++      E+ IY  DL+    +  + K       L D+      
Sbjct: 265 GINVDREYLDRYLNQVAD-----EQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQP 319

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST--YADSLPNHINKRT 696
           +P   +T  G  + T  DLE +    NP+ K  L    L+ I+ T  Y   +       T
Sbjct: 320 WP---RTPKGALRATKADLEYL-AEINPLAKAQL---SLANIEKTLGYLTKVSTQ-AAVT 371

Query: 697 QRVHT-FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
            R H    +L ++ TGR++   P LQ  P       K  R  +      L S D+SQIE 
Sbjct: 372 GRCHPQVATLGASATGRMSYGSPELQQFP-------KDARPILCDDGDGLTSIDWSQIEP 424

Query: 756 RILAHIAKITPLYQVFENSLDIHR--MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
             +A++A+       +E   D++   M+AA   G++        R  +K +  S +YG  
Sbjct: 425 VTMANMARDIDFLAAYEAGEDLYGPIMLAA---GID--------RPTSKVVLLSSMYGSG 473

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             +LA  +       A   ++ F       +++ K +    Q G V T  GR +  DE  
Sbjct: 474 IAKLAALIGHTEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGG 533

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
             K          A+N  +QGSA D+    ++ +++      +  ++ L +HDE+V   P
Sbjct: 534 IFK----------AVNYTVQGSAYDVLANTIVEMYR----RGMTDELYLAMHDEVVVSTP 579

Query: 934 -----EEEITTASQIIVHSMEK 950
                +E ++T  + ++   E+
Sbjct: 580 VAAEVQEIMSTPPEFLIRWAER 601


>gi|262342309|gb|ACY54665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P     G + R  FI  P + ++ AD + IELR+L+H           +N    
Sbjct: 1   PNLAQVPS----GHRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARCDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLSNLCCSQLAFIHDE 192


>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1419

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 125/297 (42%), Gaps = 25/297 (8%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISAD 749
            I  R  RVH    + +T T R  S  P+ QNIP   D    +RR F+S      + +  D
Sbjct: 1064 ILHRDGRVHQHIDMTATTTSRTVSAYPSCQNIP--KDDKSSVRRLFVSRFGSQGRCVEVD 1121

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----------QMRR 799
            YSQ+E+ +LA +     L     + +D H   AA   G+  +++            ++RR
Sbjct: 1122 YSQLEIVVLAILCNDANLTHDLNHGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRR 1181

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ--NG 857
             AK  +F  +YG     L     IP  +    I+R    +PGI ++    ++   +  N 
Sbjct: 1182 TAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEAYPGIAQFHRTIRSVALRPNNP 1241

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL---EDH 914
             + T F   +      S ++    +N     N PIQG  A++ +  +  + +     + +
Sbjct: 1242 GLPTSFIAEMPTGLRMSLRTRDVVLNLPPIKNYPIQGYGAELAQMMLGRLFRHFMRRDFY 1301

Query: 915  KLATKMLLQIHDELVF----EVPEEEITTASQII--VHSMEKACLPKINLRVPLKVN 965
            K    ++  +HD +      +V  E +T   +I+   H       P + + VPL+V+
Sbjct: 1302 KNRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSAHEYVPKVFPGVKISVPLQVS 1358


>gi|262212391|gb|ACY35812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 35/219 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENS 774
           PNL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+
Sbjct: 107 KEIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKAL 154

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q  A  I +R M+   +SL    +    L  +HDE
Sbjct: 155 NYLLQSLAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246]
          Length = 209

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ--RVHTFYSLASTMTGRLASLEPNLQN 722
           +P+   + E+R  +K  STY       + K  Q   V   ++     +GR++  +PNLQ 
Sbjct: 75  HPLGALVREYRAAAKRLSTYGRVW---VEKHVQDGAVLPSWNQLGAESGRMSCSDPNLQQ 131

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           +P     G   RR F + P   L+ ADYSQ ELRI A +A+   +   + +  D+H + A
Sbjct: 132 VP----RGSAHRRCFTARPEHPLVKADYSQTELRIAAKVAREKVMMAAYADGRDLHALTA 187

Query: 783 AEIFGVNIEKVSPQMRRHAK 802
           A +   + + V+   R+ AK
Sbjct: 188 ARVLNKDEDAVTKDDRQLAK 207


>gi|229472381|gb|ACQ72705.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472595|gb|ACQ72812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 29/201 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R  FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVD----CRSLFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + ++ 
Sbjct: 51  DILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D   SP           A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGRKILVD---SPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLE 912
           +Q SA  + +R ++  H  L+
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQ 178


>gi|72391456|ref|XP_846022.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei TREU927]
 gi|62176585|gb|AAX70690.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei]
 gi|70802558|gb|AAZ12463.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
          Length = 1649

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH  +    T TGRL+S  PNLQNIP K DL   I   F      ++I ADYSQ+E+ +
Sbjct: 1331 RVHGEFCHVVTATGRLSSQSPNLQNIP-KEDLRCLIVSRF-GRRAGRMIEADYSQLEVVV 1388

Query: 758  LAHIAKITPLYQVFENSLDIH----RMVAAEIFGVNIEKVSP-------QMRRHAKTINF 806
            LA +++   + Q   +++D H     ++  E +   I KV         Q+R+ AKT +F
Sbjct: 1389 LAALSRDARMLQELNDNVDFHCLRVSLMTKEPYEDVIHKVKQVKDPHYIQLRQQAKTFSF 1448

Query: 807  SIIYGISPFRLATQLRIPRSEAADYI 832
               YG     +AT   +  +E    I
Sbjct: 1449 QRQYGAGTSTIATTTGLSETEVVRLI 1474


>gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378]
          Length = 684

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 45/260 (17%)

Query: 587 GIQIDQDLLKQVSA--EIS-KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           GI++D D +KQ  A  +IS + LL++ + I +L     N +S +Q+   L       +G 
Sbjct: 246 GIKVDMDFVKQAIAMDDISHEKLLTVMQQITNLD----NPNSVQQMKSWLCE-----NGL 296

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           + +T   K  A+ L++ +   N ++      +QL+K       ++ N +   ++    F 
Sbjct: 297 EMETLGKKAVAEKLKETDGELNEVLSLR---QQLAKSSVKKYTAMENAVCSDSRARGMFQ 353

Query: 704 SLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRR 735
              +  TGR A     LQN+P                            I   L Q IR 
Sbjct: 354 FYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRNGDVETLEMLYEDIPDTLSQLIRT 413

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--V 793
           AF+     K I AD+S IE R+L+ +A  T   +VF +  DI+   A+++F V +EK  V
Sbjct: 414 AFVPRVGHKFIVADFSAIEARVLSWLAGETWRTKVFASGGDIYCASASQMFKVPVEKHGV 473

Query: 794 SPQMRRHAKTINFSIIYGIS 813
           +  +R+  K    ++ YG S
Sbjct: 474 NGHLRQKGKIAELALGYGGS 493


>gi|21929663|gb|AAM81964.1|AF445378_1 DNA polymerase I-like protein C [Trypanosoma brucei]
          Length = 1649

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH  +    T TGRL+S  PNLQNIP K DL   I   F      ++I ADYSQ+E+ +
Sbjct: 1331 RVHGEFCHVVTATGRLSSQSPNLQNIP-KEDLRCLIVSRF-GRRAGRMIEADYSQLEVVV 1388

Query: 758  LAHIAKITPLYQVFENSLDIH----RMVAAEIFGVNIEKVSP-------QMRRHAKTINF 806
            LA +++   + Q   +++D H     ++  E +   I KV         Q+R+ AKT +F
Sbjct: 1389 LAALSRDARMLQELNDNVDFHCLRVSLMTKEPYEDVIHKVKQLKDPHYIQLRQQAKTFSF 1448

Query: 807  SIIYGISPFRLATQLRIPRSEAADYI 832
               YG     +AT   +  +E    I
Sbjct: 1449 QRQYGAGTSTIATTTGLSETEVVRLI 1474


>gi|261329543|emb|CBH12525.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei
            gambiense DAL972]
          Length = 1649

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH  +    T TGRL+S  PNLQNIP K DL   I   F      ++I ADYSQ+E+ +
Sbjct: 1331 RVHGEFCHVVTATGRLSSQSPNLQNIP-KEDLRCLIVSRF-GRRAGRMIEADYSQLEVVV 1388

Query: 758  LAHIAKITPLYQVFENSLDIH----RMVAAEIFGVNIEKVSP-------QMRRHAKTINF 806
            LA +++   + Q   +++D H     ++  E +   I KV         Q+R+ AKT +F
Sbjct: 1389 LAALSRDARMLQELNDNVDFHCLRVSLMTKEPYEDVIHKVKQLKDPHYIQLRQQAKTFSF 1448

Query: 807  SIIYGISPFRLATQLRIPRSEAADYI 832
               YG     +AT   +  +E    I
Sbjct: 1449 QRQYGAGTSTIATTTGLSETEVVRLI 1474


>gi|229472223|gb|ACQ72626.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 29/201 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R  FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVD----CRSLFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + ++ 
Sbjct: 51  DILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D   SP           A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGRKILVD---SPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLE 912
           +Q SA  + +R ++  H  L+
Sbjct: 158 LQSSAGVLAKRWLLITHGRLQ 178


>gi|38638464|ref|NP_943839.1| gp61 [Mycobacterium phage PG1]
 gi|109391908|ref|YP_655158.1| gp62 [Mycobacterium phage Orion]
 gi|206600352|ref|YP_002241372.1| gp62 [Mycobacterium phage Chah]
 gi|33334079|gb|AAQ12138.1| gp61 [Mycobacterium phage PG1]
 gi|88910450|gb|ABD58378.1| gp62 [Mycobacterium phage Orion]
 gi|206287440|gb|ACI12782.1| gp62 [Mycobacterium phage Chah]
 gi|282721440|gb|ADA83888.1| gp62 [Mycobacterium phage Fang]
 gi|282721543|gb|ADA83990.1| gp61 [Mycobacterium phage Scoot17C]
          Length = 619

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 159/382 (41%), Gaps = 63/382 (16%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIY--DLSGEKFNLSSPKQ------LGDILFTKLK 638
           GI +D++ L +   +++      E+ IY  DL+    +  + K       L D+      
Sbjct: 265 GINVDREYLDRYLNQVAD-----EQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQP 319

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST--YADSLPNHINKRT 696
           +P   +T  G  + T  DLE +    NP+ K  L    L+ I+ T  Y   +       T
Sbjct: 320 WP---RTPKGALRATKADLEYL-AEINPLAKAQL---SLANIEKTLGYLTKVSTQ-AAVT 371

Query: 697 QRVHT-FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
            R H    +L ++ TGR++   P LQ  P       K  R  +      L S D+SQIE 
Sbjct: 372 GRCHPQVATLGASATGRMSYGSPELQQFP-------KDARPILCDDGDGLTSIDWSQIEP 424

Query: 756 RILAHIAKITPLYQVFENSLDIHR--MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
             +A++A+       +E   D++   M+AA   G++        R  +K +  S +YG  
Sbjct: 425 VTMANMARDIDFLAAYEAGEDLYGPIMLAA---GID--------RPTSKVVLLSSMYGSG 473

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             +LA  +       A   ++ F       +++ K +    Q G V T  GR +  DE  
Sbjct: 474 IAKLAALIGHTEESTAQIKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGG 533

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
             K          A+N  +QGSA D+    ++ +++      +  ++ L +HDE+V   P
Sbjct: 534 IFK----------AVNYTVQGSAYDVLANTIVEMYR----RGMTDELYLAMHDEVVVSTP 579

Query: 934 -----EEEITTASQIIVHSMEK 950
                +E ++T  + ++   E+
Sbjct: 580 VAAEVQEIMSTPPEFLIRWAER 601


>gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain
            Friedlin]
 gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
            strain Friedlin]
          Length = 1429

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 125/297 (42%), Gaps = 25/297 (8%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISAD 749
            I  R  RVH    + +T T R  S  P+ QNIP   D    +RR F+S      + +  D
Sbjct: 1063 ILHRDGRVHQHIDMTATTTSRTVSAYPSCQNIP--KDDKSSVRRLFVSRFGSKGRCVEVD 1120

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----------QMRR 799
            YSQ+E+ +LA +     L     + +D H   AA   G+  +++            ++RR
Sbjct: 1121 YSQLEIVVLAILCNDANLTNDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRR 1180

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY--IEKTKNFVRQNG 857
             AK  +F  +YG     L     IP  +    I+R    +PGI ++  I ++      N 
Sbjct: 1181 TAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNP 1240

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL--EDHK 915
             + T F   +      S ++    +N     N PIQG  A++ +  +  +++    +D  
Sbjct: 1241 GLPTSFIAEMPTGLRMSLRTRDVVLNLPPIKNYPIQGYGAELAQMMLGRLYRHFVRKDFY 1300

Query: 916  LATKMLLQ-IHDELVF----EVPEEEITTASQII--VHSMEKACLPKINLRVPLKVN 965
                 L+  +HD +      +V  E +    +I+  VH       P + + VPL+V+
Sbjct: 1301 DDRAFLINFVHDSVWMDCHVDVLRECVRDTCRILGSVHEYVPKVFPGVKISVPLQVS 1357


>gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
          Length = 645

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 45/260 (17%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI +D +L++Q  A  +++   L + + +L+G   N +S +Q+   L        G +T 
Sbjct: 207 GIGVDMELVRQAIAMDARSREQLTDALQELTGLD-NPNSVQQMKQWLADH-----GLETD 260

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVHTFY 703
           T   K  A   E +     P+ K +L  RQ L+K       ++ N +  + R   +  FY
Sbjct: 261 TLGKKVVA---ELVRSAPEPL-KTVLSLRQQLAKSSVKKYAAMENAVCADGRAHGMFQFY 316

Query: 704 SLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRR 735
              +  TGR +     LQN+P                            I   L Q IR 
Sbjct: 317 --GANRTGRFSGRLIQLQNLPQNHMSDLAQARALMRGGNYEAISMLYEDIPDTLSQLIRT 374

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--V 793
           AF+    +K I AD+S IE R++A  A      +VFE+  DI+   A+++F V +EK  V
Sbjct: 375 AFVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGDDIYSASASQMFHVPVEKHGV 434

Query: 794 SPQMRRHAKTINFSIIYGIS 813
           +  +R+  K    ++ YG S
Sbjct: 435 NGHLRQKGKIAELALGYGGS 454


>gi|17570811|ref|NP_523320.1| DNA polymerase [Enterobacteria phage T3]
 gi|118853|sp|P20311|DPOL_BPT3 RecName: Full=DNA polymerase
 gi|15702|emb|CAA35140.1| 5 [Enterobacteria phage T3]
 gi|17384295|emb|CAC86283.1| DNA polymerase [Enterobacteria phage T3]
          Length = 704

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 47/306 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I               +++   +    
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L          +  IHDE+      EEI      +     +      N R  L    K+
Sbjct: 637 GLKHGWDGDFAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEHWNFRCLLDTEGKM 696

Query: 969 SNNWQE 974
             NW+E
Sbjct: 697 GANWKE 702


>gi|296270208|ref|YP_003652840.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
 gi|296092995|gb|ADG88947.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
          Length = 538

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 156/407 (38%), Gaps = 65/407 (15%)

Query: 579 VVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYDLSGEKFNLSSPKQ 628
           + ++M   G+   QD+   +  E+             L +L + I    G   N  SP+Q
Sbjct: 166 IAAEMRHHGMPWRQDVHDALLTELLGPRPAPGMRPARLQALADEISAAFGHPVNPDSPQQ 225

Query: 629 LGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           L        +  PS          T +  LE++   D+P +K +LE+++LS++ S Y  +
Sbjct: 226 LLKAFKAAGIDLPS----------TRSHVLERV---DHPAVKPLLEYKELSRLHSFYGWA 272

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
                  R  R H  Y +   ++GR A+       IP      + +RRA ++     L+ 
Sbjct: 273 WAAQWV-RGGRFHPEYVVGGVVSGRWATSGGGALQIP------KVMRRAVVADQGWTLVV 325

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD +Q+E R+LA ++             D++  + AE FG +        R  AK    S
Sbjct: 326 ADAAQLEPRVLAAMSGDA-ALARAAGEADLYSAL-AEAFGGS--------RESAKIAMLS 375

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
            +YG       T    PR      +     RFP  + ++E+      +   V +  GR  
Sbjct: 376 AMYG------GTSGDAPR-----LLAVMRQRFPRAYAFVEEAARAGEEGRVVRSWLGRTC 424

Query: 868 -----HYDEINSPKSSIRNINERAAI--NAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
                 + E+ +     R   ER     N  +Q +AA+     +  +   L D     ++
Sbjct: 425 PPPSQRWRELTAGPDGGRVARERGRFTRNFVVQATAAEWALTLLAVLRGLLPD---PARL 481

Query: 921 LLQIHDELVFEVP---EEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           +   HDE++   P    E +  A +       +    +  +R P+K 
Sbjct: 482 VFFQHDEVMVHCPLHQAERVRAAVERAAGEATRLLFGRTPVRFPMKA 528


>gi|32442303|gb|AAP82222.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 8/173 (4%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQI 753
           +  ++H   +     TGR    +PN+   P +    G++ R  F +P    L+ AD S +
Sbjct: 243 KGGKIHGRVNTNGAATGRCTHSKPNVAQTPSVGAAYGRECRELFHAPEGYSLVGADLSGL 302

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR LAH          F++      +V  +I  +N +      R +AKT  +  +YG  
Sbjct: 303 ELRCLAH------YMARFDSGSYADVVVNGDIHTLNQKSAGLPTRNNAKTFIYGFLYGAG 356

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN-GYVETIFGR 865
           P ++ + +     E    I ++    P I          V++N GY++ + GR
Sbjct: 357 PAKIGSIVDGSEKEGRKLISKFMKATPAIKLLRTAVSEVVKKNGGYLKGLDGR 409


>gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14]
          Length = 651

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 29/168 (17%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------- 724
           +Q +K   +   ++ N + K  +    F    +  TGR A     LQN+P          
Sbjct: 293 QQAAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEA 352

Query: 725 ---IKTD--------------LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
               KT               L Q IR AF+    KK I  D+S IE R+L+H+A     
Sbjct: 353 RKLFKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWR 412

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
            +VFE   DI+ M A+++FGV +EK   + ++R+  K    +  YG S
Sbjct: 413 SKVFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGS 460


>gi|262342279|gb|ACY54650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 35/218 (16%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENSL 775
           NL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N  
Sbjct: 2   NLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG- 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK-- 833
           DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K  
Sbjct: 57  DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGK 107

Query: 834 ----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
                Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N
Sbjct: 108 EIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALN 155

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 156 YLLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|262212357|gb|ACY35795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 35/218 (16%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENSL 775
           NL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+        V  N  
Sbjct: 2   NLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG- 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK-- 833
           DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K  
Sbjct: 57  DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGK 107

Query: 834 ----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
                Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N
Sbjct: 108 EIRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALN 155

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +Q SA  + +R M+   +SL    +    L  IHDE
Sbjct: 156 YLLQSSAGVVAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262342103|gb|ACY54562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342129|gb|ACY54575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 31/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +DL  + R+ F +      + AD + IELR+ AH +A+       ++    
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASSGYVTVGADLAGIELRMPAHYLAR-------YDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK--- 833
              ++  +I   N +K+    RR  KT+ ++ +YG    ++        S+ A   K   
Sbjct: 50  GDVLLNGDIHQENADKIGIS-RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKE 108

Query: 834 ---RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N 
Sbjct: 109 IRQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNY 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 157 LLQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 596

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 111/526 (21%), Positives = 205/526 (38%), Gaps = 87/526 (16%)

Query: 465 IGHNIKYDKLVLHRYG--------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           I HN ++D+ V  R          I  R + D   ++  L + R   ++A  A+K L   
Sbjct: 83  ISHNARFDRAVFFRMKELGIVPAHIMPREWHDSAALAVYLQAPR---NLAGAAEKLLGEK 139

Query: 517 RKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
             + ++     I    +  D  V ++A++++ +  +LW+    K   +      ERL   
Sbjct: 140 PNKAIRDAMKGIQGGLLCHDKAVLDYALDDARLACELWISHCDKWPKK------ERL--- 190

Query: 576 MIDVVSQMEIT----GIQIDQ-------DLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
               +SQ+ I     G+ +DQ       + L QV  + + NL             +   S
Sbjct: 191 ----LSQLTIEQGEYGVHLDQKRIREGIETLTQVRDDEATNLPWFP---------RLKPS 237

Query: 625 SPKQLGDILF-TKLKFPSGAKTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLSKIKS 682
           SPK   +     ++  P+       Q   T + +E+   G+  P +K++ EWR+ +++  
Sbjct: 238 SPKAFAEACQQARIPIPNSTSEDDPQ---TQEWIERY--GERYPWLKHMSEWRKANRMLK 292

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP-NLQNIPIKTDLGQKIRRAFISPP 741
              +++ +   +            +  TGR A     N QN   +   G   R+  ++ P
Sbjct: 293 VL-ETMQSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNREAYYGVDPRKCLVARP 351

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDI---HRMVAAEIFGVNIEKVSPQMR 798
             KLI AD SQIE R+LA IA    L+    N L I   H   +    G +++K +  + 
Sbjct: 352 GHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQAHAETSMNWKGGDLKKENSNLY 411

Query: 799 RHAKTINFSIIYG-----ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
             AK     + YG              L +   EA   +  +    P I    +  ++ +
Sbjct: 412 LLAKCRVIGLGYGAGCKTFQSLARGYGLEMSIGEAKRTVDDFRKANPRIVSLWQAVEDSM 471

Query: 854 RQN------GYVETIFGRRIHYDEINSPKSSIRNINERAA----------INAPIQGSAA 897
           R +       Y+ ++  R I Y ++   +  +    ER                +Q +A 
Sbjct: 472 RYHIGSTFFMYLPSL--RSIRYFDVQE-EEGLTATTERGGRRLHWYGGKLTENLVQATAR 528

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           D+    ++ +HK+        ++L  +HDE++ EVPE    T   +
Sbjct: 529 DVFAEGLLRIHKA------GIRILWTVHDEVICEVPENSDITVETV 568


>gi|170781985|ref|YP_001710317.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156553|emb|CAQ01704.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 592

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 151/391 (38%), Gaps = 71/391 (18%)

Query: 579 VVSQMEITGIQIDQ--------DLL--KQVSAEISKNLLSLEENIYD-LSGEKFNLSSPK 627
           V ++M   G+  D         DLL  +   +     LL L   I + L+    N+ SP 
Sbjct: 201 VAAEMSADGLPWDTAVHDALLVDLLGGRPAHSGAPPALLRLAARIREILAAPDLNVDSPP 260

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
              D+L   L+      + T QW+     L++I   D+P+I  +LE ++LS++ +    +
Sbjct: 261 ---DVL-RALRRAGVDASSTRQWE-----LQEI---DHPVIAPLLEHKKLSRLLTANGWT 308

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
                  R  R H  Y     +TGR A+       +P      ++IR A  + P  +L+ 
Sbjct: 309 W-METWIRDGRFHPEYVPGGVVTGRWAASGGGALQLP------RQIRSAVRADPGWRLVV 361

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD +Q+E R+LA +++   +      +     +V A +            R HAK     
Sbjct: 362 ADAAQLEPRVLAALSEDRAMADAGRGTDLYQGLVDAGVV---------DTRAHAKVAMLG 412

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR- 866
            +YG +             E+   + R    +P    Y+E+        G V T  GR  
Sbjct: 413 AMYGAT-----------SGESGRLMPRLVRAYPRATGYVERAARAGESGGVVSTRLGRSS 461

Query: 867 -------IHYDEIN-----SPKSSIRNINE-----RAAINAPIQGSAADITRRAMISVHK 909
                  +   +I      SP  + R         R   N  +QGSAA+     +  + +
Sbjct: 462 PPPGDAWVDVQQIGRAGEASPSDAARARTSARDQGRFTRNFVVQGSAAEWALCWLAGLRR 521

Query: 910 ---SLEDHKLATKMLLQIHDELVFEVPEEEI 937
              +LE       ++  +HDE++   P++ +
Sbjct: 522 RLAALERPGSRPHLVFFLHDEVMVHTPDDRV 552


>gi|229472265|gb|ACQ72647.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 36/221 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +DL    RR F + P   ++ AD S IELR+LAH +A+       +++   
Sbjct: 1   PNLAQVP--SDL--NFRRLFCASPGHIMVGADLSGIELRMLAHYLAR-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL--RIPRSEAADYIKR 834
              ++  +I   N +K+    RR  KT+ ++ +YG    R+       +P  +A    K 
Sbjct: 50  GDILLHGDIHQENADKIGIS-RRLVKTVTYAFLYGAGDQRIGESYDQSLPPDKAKQKGKE 108

Query: 835 ----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +E TK      G++ +I GR I+ D            +   A+N 
Sbjct: 109 IRQAYMDAIPGLEKLVEATKK-AADRGFIRSIDGRHINVD------------SSHKALNM 155

Query: 891 PIQGSAADITRRAMISVHK---SLEDHKLA-TKMLLQIHDE 927
            +Q SA  I +R M+  +    ++++  LA T  L  IHDE
Sbjct: 156 LLQSSAGCIAKRWMVIANDNFPTIDNEYLAHTHQLAFIHDE 196


>gi|32442285|gb|AAP82213.1| DNA polymerase [Podovirus GOM]
          Length = 409

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 39/320 (12%)

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE---------- 611
            EKL+H   R  +  + +V  M   G ++ +  + Q+  E  K  LS EE          
Sbjct: 113 AEKLVHKTFRPRETQMTLVPLMTKAG-KVSK--MAQIKGETKKVRLSDEEYAKASANPNE 169

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
           ++     E FNL S KQ+G+ L  +  +     T TGQ     + L +I   D P    I
Sbjct: 170 HLVRCDSEPFNLGSRKQIGEYLM-EFGWKPAKFTPTGQPIVDEKVLSKIK--DIPEAAVI 226

Query: 672 LEW----RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IK 726
            E+    +++++I S + +   +       RV  F +    +TGR+    PN+  +P   
Sbjct: 227 AEYLMLQKRIAQITSWFKEVGDD------GRVRGFVNTNGAVTGRMTHSHPNMAQVPSTG 280

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL-YQVFENSLDIHRMVAAEI 785
           +  G++ R+ +      KL+  D S +ELR+LAH        Y++    +     +AA +
Sbjct: 281 SPYGKECRQCWTVMDGYKLVGIDASGLELRMLAHYMNDEGFTYELLNGDIHTANQMAAGL 340

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
                     + R  AKT  ++++YG    +L   +     +     + +F   P     
Sbjct: 341 ----------ESRNQAKTFIYALLYGAGDAKLGAVVGGNADDGGRLRQSFFDNLPAFKVL 390

Query: 846 IEKTKNFVRQNGYVETIFGR 865
            ++     ++ GY++ + GR
Sbjct: 391 KDRVARAAKR-GYLKGLDGR 409


>gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
 gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
          Length = 651

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 31/149 (20%)

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-------------IKTD---------- 728
           ++ R + +  FY   +  TGR A     LQN+P              KT           
Sbjct: 312 LDGRARGMFQFY--GANRTGRWAGRLVQLQNLPQNHLPDLKEARDLFKTGDLEATDLLYG 369

Query: 729 ----LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
               L Q IR AF+    KK I  D+S IE R+L+H+A       VFE   DI+ M A++
Sbjct: 370 TQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMVFEQGKDIYCMSASQ 429

Query: 785 IFGVNIEK--VSPQMRRHAKTINFSIIYG 811
           +FGV +EK   +  +R+  K    +  YG
Sbjct: 430 MFGVPVEKHGRNADLRQKGKIAELACGYG 458


>gi|151505397|gb|ABG29153.2| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|151505399|gb|ABG29157.2| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 162

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 8/126 (6%)

Query: 143 DLMQLVSPTTCLYDTVK------EEKID-IEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           DL+QLV+   C+   V+      E  I+ I   +  +GI P ++   + L GD+ D + G
Sbjct: 1   DLLQLVNENNCIIKVVRNPGNFTEYSIETINEFVDIYGINPNQIPDYKGLAGDTSDRLKG 60

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           + GIG K A  LL E+G+LE I  N  +I   K +E +    E+A   +KL +L  DV +
Sbjct: 61  VAGIGPKKAVSLLNEFGSLEAIYENIGKI-SGKTKEYLENDYESAHFCKKLAILNPDVEM 119

Query: 256 TIPLEH 261
              +++
Sbjct: 120 DTDIDN 125


>gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
 gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
          Length = 651

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 31/149 (20%)

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-------------IKTD---------- 728
           ++ R + +  FY   +  TGR A     LQN+P              KT           
Sbjct: 312 LDGRARGMFQFY--GANRTGRWAGRLVQLQNLPQNHLPDLKEARDLFKTGDLEATDLLYG 369

Query: 729 ----LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
               L Q IR AF+    KK I  D+S IE R+L+H+A       VFE   DI+ M A++
Sbjct: 370 TQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMVFEQGKDIYCMSASQ 429

Query: 785 IFGVNIEK--VSPQMRRHAKTINFSIIYG 811
           +FGV +EK   +  +R+  K    +  YG
Sbjct: 430 MFGVPVEKHGRNADLRQKGKIAELACGYG 458


>gi|194473823|ref|YP_002048647.1| DNA polymerase [Morganella phage MmP1]
 gi|194307044|gb|ACF42026.1| DNA polymerase [Morganella phage MmP1]
          Length = 703

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 128/314 (40%), Gaps = 61/314 (19%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKK-------LISA- 748
           R+H   +    +TGR     PN+  +P ++   G++ R+AF +   +K        + A 
Sbjct: 408 RMHGSVNPNGAVTGRATHSFPNVAQVPSVRAPYGEECRKAFGAEHNRKPDGTKDPWVQAG 467

Query: 749 -DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            D S +ELR LAH          F+N    H ++  +I   N        R +AKT  + 
Sbjct: 468 IDASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQNAAELPTRDNAKTFIYG 521

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI---HEYIE----KTKNFVR------ 854
            +YG    ++   +   +    +   ++    P I    E IE    K+  +VR      
Sbjct: 522 FLYGAGDEKIGQIVGAGKERGKELKAKFLENTPAIAALRESIEQTLVKSSKWVRNADGTS 581

Query: 855 ------QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
                 +  +V+ + GR++H   + SP          AA+N  +Q + A I ++ +++  
Sbjct: 582 EQKVSWKRRWVKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKQWIVTTE 629

Query: 909 KSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI----NL 958
           + L    L          +  +HDE+      E I   ++I+V + ++A + K+    N 
Sbjct: 630 EMLLAKGLKHGWDGDFAYMAWVHDEIQVACRNEAI---AKIVVETAQEA-MRKVGEMFNF 685

Query: 959 RVPLKVNIKVSNNW 972
           R  L    K+  NW
Sbjct: 686 RCQLDTEGKIGANW 699


>gi|71416914|ref|XP_810416.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70874942|gb|EAN88565.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1627

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 12/133 (9%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH       T TGRL+S  PNLQNIP + DL + I   F      ++I ADYSQ+E+ +
Sbjct: 1308 RVHGELCHTVTATGRLSSQSPNLQNIPREEDLRRLIVSRF-GRREGRMIEADYSQLEVVV 1366

Query: 758  LAHIAKITPLYQVFENSLDIH----RMVAAEIFGVNIEKVSP-------QMRRHAKTINF 806
            LA +++ T + Q   + +D H     ++  E +   + K          Q+R+ AKT +F
Sbjct: 1367 LAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYENVVRKAKQERDPHYIQLRQQAKTFSF 1426

Query: 807  SIIYGISPFRLAT 819
               YG     +AT
Sbjct: 1427 QRQYGAGIATIAT 1439


>gi|152206740|gb|ABS30731.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 162

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 8/126 (6%)

Query: 143 DLMQLVSPTTCLYDTVK------EEKID-IEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           DL+QLV+   C+   V+      E  I+ I   +  +GI P ++   + L GD+ D + G
Sbjct: 1   DLLQLVNENNCIIKVVRNPGNFTEYSIEPINEFVDIYGINPNQIPDYKGLAGDTSDRLKG 60

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           + GIG K A  LL E+G+LE I  N  +I   K +E +    E+A   +KL +L  DV +
Sbjct: 61  VAGIGPKKAVSLLNEFGSLEAIYENIGKI-SGKTKEYLENDYESAHFCKKLAILNPDVEM 119

Query: 256 TIPLEH 261
              +++
Sbjct: 120 DTDIDN 125


>gi|71414776|ref|XP_809478.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70873866|gb|EAN87627.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1499

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 12/133 (9%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH       T TGRL+S  PNLQNIP + DL + I   F      ++I ADYSQ+E+ +
Sbjct: 1180 RVHGELCHTVTATGRLSSQSPNLQNIPREEDLRRLIVSRF-GRREGRMIEADYSQLEVVV 1238

Query: 758  LAHIAKITPLYQVFENSLDIH----RMVAAEIFGVNIEKVSP-------QMRRHAKTINF 806
            LA +++ T + Q   + +D H     ++  E +   + K          Q+R+ AKT +F
Sbjct: 1239 LAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYENVVRKAKQERDPHYIQLRQQAKTFSF 1298

Query: 807  SIIYGISPFRLAT 819
               YG     +AT
Sbjct: 1299 QRQYGAGIATIAT 1311


>gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1]
          Length = 658

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 35/179 (19%)

Query: 668 IKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +K++LE R +   S +K   A       + R + + +FY   ++ TGR A     LQN+P
Sbjct: 291 VKSVLELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFY--GASRTGRWAGRIIQLQNLP 348

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       +   L Q IR AF+  P  K I AD+S IE R
Sbjct: 349 QNHIPDLTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEAR 408

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           ++A +A        F N  DI+   A+++FGV + K  V+ ++R+  K    +  YG S
Sbjct: 409 VIAWLAGEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGS 467


>gi|48697456|ref|YP_024841.1| Pas55 [Actinoplanes phage phiAsp2]
 gi|47679674|gb|AAT36803.1| Pas55 [Actinoplanes phage phiAsp2]
          Length = 1415

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 31/255 (12%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELR 756
            RVH         TGR +   P L  +  +   G+ + RA + P P + L+SAD SQ+++R
Sbjct: 1162 RVHPKIGF-DQATGRWSVTRPGLTVLGKRG--GRHVERAVLLPDPGEVLMSADLSQVDMR 1218

Query: 757  ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
             +A +++     ++ +   D H  +A E+FG      +   R  AK I     YG     
Sbjct: 1219 AVAGLSQDLAYIEMLKKD-DPHAEIAKELFG------TADRREEAKAIGHGWNYGRGIKA 1271

Query: 817  LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            ++    I  +    +      RF  + E+  + +        ++  FGR +  D      
Sbjct: 1272 ISEGQEIEPALVRRFDASMRERFGRLVEWQTEVRAVAEAGQLLDNGFGRLMRADP----- 1326

Query: 877  SSIRNINERAAINAPI---QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
                   +RA    P    QG+A DI    ++ +     D ++   +  QIHDE+VF VP
Sbjct: 1327 -------QRAHTQGPALMGQGAARDIMMTGLLRL-----DRRILPMLRAQIHDEIVFSVP 1374

Query: 934  EEEITTASQIIVHSM 948
              E     + +V ++
Sbjct: 1375 VAEAEEVGRAVVEAL 1389


>gi|294085087|ref|YP_003551847.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664662|gb|ADE39763.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 418

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 16/220 (7%)

Query: 735 RAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD-IHRMVAAEIFGVNIEK 792
           R+ I P P   L   D+S  E+ I A ++    L+Q + +    I   + A +  V   K
Sbjct: 167 RSLIKPEPGTALAYLDFSSQEIAIAACLSGDDALWQAYASGDPYIQFAIDAGLAPVGATK 226

Query: 793 VSPQMRRHA-KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            S +  R A K I   + YG+S + +  +  +   EA D ++R+   +     + E+  N
Sbjct: 227 ESHKAERDACKVIMLGVQYGMSAYGMGQKASLHVLEAEDLLQRHKDVYLTFWRWAERNVN 286

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
                  + T+FG +I            R++ E   +N P+Q + A++ R A I+    L
Sbjct: 287 AGLAGVELHTVFGWKIR-------AGKGRDVKENTFLNWPMQANGAEMLRLAYIA----L 335

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           E+  +   M   +HD ++ E P + I    +   H M+KA
Sbjct: 336 EEESIV--MCAPVHDAILIEAPLDAIDQHVERATHEMQKA 373


>gi|229472349|gb|ACQ72689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDATPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +R M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKRWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|262212347|gb|ACY35790.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 41/219 (18%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-- 775
           PNL  +P  +DL    RR F++ P +  + AD S IELR+L+H       Y  F ++L  
Sbjct: 1   PNLAQVP--SDL--TYRRLFMATPGQVTVGADLSGIELRMLSHYLARYDTY--FGDNLLN 54

Query: 776 -DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA---TQLRIPRSEAADY 831
            DIH++        N +K+    R+  KT+ ++ +YG    ++     +L  P+   A  
Sbjct: 55  GDIHQL--------NADKIG-TARKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKAKAKG 105

Query: 832 --IKRYF-HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             IK  F    PG+ + +   K+   + G+V+ I GR+I  D   SP           A+
Sbjct: 106 REIKEAFIEAIPGLSDLLSAVKSAANR-GFVKGIDGRKILVD---SPHK---------AL 152

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +R M+  +    D+      L  +HDE
Sbjct: 153 NYLLQGSAGVVAKRWMVIAN----DNPFCCSQLAFVHDE 187


>gi|313892512|ref|ZP_07826101.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119091|gb|EFR42294.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 626

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 120/292 (41%), Gaps = 26/292 (8%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQ 752
           K   ++H   +   T+TGR     PN+  +P + T  G++ R+ F  P        D   
Sbjct: 344 KSDGKIHGRVNPNGTVTGRATHSNPNVAQVPHVGTPYGEECRKLFNVPQGWTQAGIDACG 403

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +ELR LAH   ++P    ++     H +V  +I   N +      R  AKT  ++ +YG 
Sbjct: 404 LELRCLAHY--LSP----YDKGKYAHEVVHGDIHTSNQKAAGLATRNLAKTFIYAFLYGA 457

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGI---HEYIEKTKNFVRQNGYVETIFGRRIHY 869
               +   +     E     K++F   P I    E IEK    ++   Y   I  +R + 
Sbjct: 458 GDLMIGELVGGKEKEGKAIKKKFFKATPSIKLLKEDIEKA--LIKTRIYNRKIQWKRKYL 515

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED----HKLATKMLLQ-- 923
             ++  K  +R+I+  +A+N  +Q + A I +  ++   + L      H      +L   
Sbjct: 516 RGLDGRKLYVRSIH--SALNLLLQSAGALICKYWIVRTEERLTQRGYKHGWNGDFVLMAW 573

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVNIKVSNNW 972
           +HDE  +    EEI   + +++H  ++A          RV L    K   NW
Sbjct: 574 VHDEGQYACRTEEI---ADVVIHEAQEAMRDTQKHFKFRVQLDTEGKKGKNW 622


>gi|262342321|gb|ACY54671.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 31/216 (14%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLDI 777
           NL  +P  +DL  + R+ F +     ++ AD + IELR+LAH +A+       ++     
Sbjct: 2   NLAQVP--SDL--EFRKLFTASSGYVMVGADLAGIELRMLAHYLAR-------YDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK---- 833
             ++   I   N +K+    RR  KT+ ++ +YG    ++        S+ A   K    
Sbjct: 51  DVLLNGGIHQENADKIGIS-RRLVKTVTYAFLYGAGDKKIGLSYDPQPSDKAATAKGKEI 109

Query: 834 --RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|322786066|gb|EFZ12677.1| hypothetical protein SINV_07179 [Solenopsis invicta]
          Length = 136

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 26/116 (22%)

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDH---------------KLATK-------M 920
            ER A+N  +QGSAADI ++AMIS+   +  +               KL +        +
Sbjct: 21  TERQAVNTKVQGSAADIVKKAMISIEDKIRSYFPDSTVIFPEVHTTRKLRSNLQQRGGYL 80

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +LQ+HDEL++EV   ++   + II  SME  C     L VPL V ++V   W + N
Sbjct: 81  VLQLHDELLYEVNLVDLKQVAVIIKESMENVC----QLSVPLPVKVRVGPAWGDLN 132


>gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 645

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 192/479 (40%), Gaps = 85/479 (17%)

Query: 392 FKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVETIFIDLSVHTSQ----DSTGKNTLT 446
            K I+  ++ F S P+A A +    + +D     E +    SV   +    D      + 
Sbjct: 1   MKSISIDVETFSSVPLAKAGVYKYAESED----FEILLFGYSVDGGEVQVVDLANGEEIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMR--GFEDIMLMSYVLDSGRSSH 503
           KEIL+ L     +E   K   N  ++++ L R+ GI ++   +   M+ +  L    S  
Sbjct: 57  KEILAALT----DETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLK 112

Query: 504 DIASIAQKWLSYTRKEILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP--K 559
           D+ ++   WL   + E  K   R   +P      +  +   +       + W L     K
Sbjct: 113 DVGAVL--WLDRQKLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAP--EKWKLFTEYNK 168

Query: 560 LIVEKLLHVYERLDKPMI------DVVSQMEIT--GIQIDQDLLKQ--VSAEISKNL-LS 608
             VE  + +  RL K  +      + V   EI   GI +D   + Q     E SK + L 
Sbjct: 169 RDVETEMAIQARLKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLE 228

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
             +N+ DL     N +SP QL D L  K L   S AK++  +   TA        GD   
Sbjct: 229 RAQNLTDLE----NPNSPLQLMDWLHGKGLSVESLAKSEVTKMLKTAT-------GD--- 274

Query: 668 IKNILEWRQ-LSK--IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           ++ +LE RQ LSK  +K   A       + R + +  FY   +  TGR A     LQN+P
Sbjct: 275 VREVLELRQQLSKTSVKKYMAMEAVTGADHRARGLFQFY--GANRTGRFAGRLIQLQNLP 332

Query: 725 ---------IKT-------------------DLGQKIRRAFISPPTKKLISADYSQIELR 756
                    ++T                    L Q IR +F+  P  + + ADY+ IE R
Sbjct: 333 QNHLAQLKEVRTLVKDGDFELLDMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEAR 392

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           +LA +A    +  VF    DI+   A+ +F   +EK   +  +R+  K    S  YG S
Sbjct: 393 VLAWLAGEQWVLDVFREHGDIYCETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGS 451


>gi|328479628|gb|EGF48818.1| DNA polymerase I [Lactobacillus rhamnosus MTCC 5462]
          Length = 94

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 9  LVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
          L+DG+S  +RAF+A    L R    DGL  NAI  F NML  +L++ + ++      V F
Sbjct: 2  LIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDAAL----VAF 57

Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
          D    TFR   Y DYK+ R K P  LL QLP ++
Sbjct: 58 DAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIK 91


>gi|229472571|gb|ACQ72800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R  FI+ P  KL+ +D + IELR+ AH          ++     + ++  +I  VN +K+
Sbjct: 7   RSLFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYANILLNDDIHQVNADKI 60

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRI------PRSEAADYIKRYFHRFPGIHEYIE 847
               RR  KT+ ++ +YG S  ++ T           R + ++  + Y    PG+ + +E
Sbjct: 61  GIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQLVE 119

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             K   ++ G + +I GR+I  D   SP           A+N  +Q SA  + +R ++  
Sbjct: 120 AVKKKAKEAGSIRSIDGRKILVD---SPHK---------ALNFLLQSSAGVLAKRWLLIT 167

Query: 908 HKSLE 912
           H  L+
Sbjct: 168 HDRLQ 172


>gi|229472373|gb|ACQ72701.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   Q+GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-QSGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|262342127|gb|ACY54574.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 35/216 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +DL    RR F++ P   ++ AD S IELR+L+H       Y    N+   
Sbjct: 1   PNLAQVP--SDL--TYRRLFMATPGLVMVGADVSGIELRMLSH-------YLARYNTYLG 49

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA---TQLRIP---RSEAADY 831
             ++  +I  +N +K+    R+  KT+ ++ +YG    ++     +L  P   +++  + 
Sbjct: 50  DNLLNGDIHQLNADKIGIT-RKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKAKAKGREI 108

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + +    PG+ + +   K+   + G+V+ I GR+I  D   SP           A+N  
Sbjct: 109 KEAFIEAIPGLSDLLSAVKSAANR-GFVKGIDGRKILVD---SPHK---------ALNYL 155

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R M+  +    D+      L  IHDE
Sbjct: 156 LQGSAGVVAKRWMVIAN----DNPFCCSQLAFIHDE 187


>gi|229472613|gb|ACQ72821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 36/221 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +DL    RR F + P   ++ AD S IELR+LAH +A+       +++   
Sbjct: 1   PNLAQVP--SDL--NFRRLFCASPGHIMVGADLSGIELRMLAHYLAR-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL--RIPRSEAADYIKR 834
              ++  +I   N +K+    RR  KT+ ++ +YG    R+       +P  +A    K 
Sbjct: 50  GDILLHGDIHQENADKIGIS-RRLVKTVTYASLYGAGDQRIGESYDQSLPPDKAKQKGKE 108

Query: 835 ----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +E TK      G++ +I GR I+ D            +   A+N 
Sbjct: 109 IRQAYMDAIPGLEKLVEATKK-AADRGFIRSIDGRHINVD------------SSHKALNM 155

Query: 891 PIQGSAADITRRAMISVHK---SLEDHKLA-TKMLLQIHDE 927
            +Q SA  I +R M+  +    ++++  LA T  L  IHDE
Sbjct: 156 LLQSSAGCIAKRWMVIANDNFPTIDNEYLAHTHQLAFIHDE 196


>gi|325964629|ref|YP_004242535.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470716|gb|ADX74401.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 572

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 126/322 (39%), Gaps = 47/322 (14%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +P I  +L ++QLS++ +    S  +       R    Y +   ++GR AS       IP
Sbjct: 270 HPAIAPLLAYKQLSRLHTANGWSWLDAWVA-GGRFRPEYVVGGVVSGRWASRGGGALQIP 328

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                 + IR A  + P  KLI AD SQ+E R+L  +A+ + + +   +  D++  +AA+
Sbjct: 329 ------RNIRGAVHADPGHKLIVADASQLEPRVLVALAQDSSMAEAARDQ-DLYAGIAAK 381

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
            FG +        R  AK      +YG +             EA   + +    +P   +
Sbjct: 382 GFGGD--------RAKAKVALLGAMYGAT-----------SGEAGRLMPQLARTYPRAVD 422

Query: 845 YIEKTKNFVRQNGYVETIFGR-------------RIHYDEINSPKSSIRNINERAAINAP 891
           Y+E+        G V T  GR             R    E      SI     R   N  
Sbjct: 423 YVEQAARAGESGGTVTTRLGRSSPPPSERWFQSQRSASAEEQRRAESIARSRGRFTRNFV 482

Query: 892 IQGSAADIT----RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT---TASQII 944
           +QGSAAD            +    +D  L  +++L +HDE++   P E +    TA +  
Sbjct: 483 VQGSAADWAACWLAELRRRLRALRKDLHLNAELVLFLHDEVMVHAPVEAVDACITAIEDA 542

Query: 945 VHSMEKACLPKINLRVPLKVNI 966
             + ++     I +  P+ V +
Sbjct: 543 ARAAKELLFGPIPVEFPVSVAV 564


>gi|229472241|gb|ACQ72635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + ++ M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish]
 gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish]
          Length = 605

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 166/382 (43%), Gaps = 53/382 (13%)

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            EK+L   E + + M+    +    G+ +D + L +   E     +   E +    G + 
Sbjct: 227 AEKILGDQETVHRVMLRRTGK----GLAVDHEYLTRYQEEKDAERIQ-HEALLAAHGLEG 281

Query: 622 NLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
                K++ + L +  + P+   +T TG  K T +DL  ++  D+P+       R+L++I
Sbjct: 282 GAGKGKKIVEYLESIGQLPANWPRTPTGGLKAT-KDL--LDGFDHPLTT---AQRKLAEI 335

Query: 681 KSTYADSLPNHINKR------TQRVHTFYS-LASTMTGRLASLEPNLQNIPIKTDLGQKI 733
                D +  ++ K       T R H     L ++ TGR+A   P LQ  P       K 
Sbjct: 336 -----DKVLGYLTKVERQASVTGRCHPQVGVLGASATGRMAYSMPELQQFP-------KD 383

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
            R  I+   + L S D+SQIE   +A++A        FE   D++  +     G+ + K 
Sbjct: 384 ARPIITDDGQGLTSIDWSQIEPVTMANMAGDVGFLIPFEAGEDLYEPIQRSC-GLPMTK- 441

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRS-EAADYIKR-YFHRFPGIHEYIEKTKN 851
             + R  AK +  + +YG+    LA  L+I  + E+A  I+R      P   +++ + + 
Sbjct: 442 --EGRDIAKVVLLATMYGMGVNGLA--LKINHTVESAQQIRRQMLAAMPESAKWMARVQG 497

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
              Q G + T  GR +  D+    +          A+N  +QGSA D+    ++ + ++ 
Sbjct: 498 IADQYGRIITAAGRILPVDDGGVFR----------AVNYTVQGSALDVLHDTIVRMERA- 546

Query: 912 EDHKLATKMLLQIHDELVFEVP 933
               LA ++ + +HDEL+   P
Sbjct: 547 ---GLADELHVAMHDELIVSTP 565


>gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 565

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 136/347 (39%), Gaps = 61/347 (17%)

Query: 641 SGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA-DSLPNHINKRTQR 698
           SG K T T +W     +LE++    +P +  +L +++L ++ + +    L + +  R  R
Sbjct: 251 SGVKLTSTRRW-----ELEKVG---HPAVAPLLAYKKLYRVWTAHGWGWLADWV--REGR 300

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
               Y +   ++GR  +       IP      + +RRA ++ P  +L+ AD +Q+E RIL
Sbjct: 301 FRPRYVVGGAVSGRWTTAGGGALQIP------KVVRRAVVADPGWRLVVADAAQMEPRIL 354

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           A +A    L  V   + D++  V+   F  +        R  AK      IYG +     
Sbjct: 355 AAVAGDAGLLDVAAKADDLYAAVSDRAFAGD--------RDRAKIAVLGAIYGQT----- 401

Query: 819 TQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFGR---------- 865
                    + D +K       RFP    Y+++      +   V T  GR          
Sbjct: 402 ---------SGDGLKNLAALRRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPVGGEDP 452

Query: 866 ---RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
               I  ++  +P  S      R   N  +QG+AAD T   ++           A +++ 
Sbjct: 453 GEAGIPQEDEPAPSPSASRARGRFTRNFVVQGAAADWT--LLLLAALRRALRARAAELVF 510

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVNI 966
             HDE++   P  E      +I  +  +A   C   I LRVP    +
Sbjct: 511 FQHDEVIVHAPAAEAAEIPALIAEAAREATRVCFGDIPLRVPFTTAV 557


>gi|262212061|gb|ACY35647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212137|gb|ACY35685.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212159|gb|ACY35696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA------D 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++        S A       +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKRGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G++E I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIEAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|88854986|ref|ZP_01129651.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88815514|gb|EAR25371.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 558

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 139/341 (40%), Gaps = 61/341 (17%)

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF-----YSLA 706
           T A +L+Q+    +P+I  +L +++L+++ +       N  N     VH       Y   
Sbjct: 245 TRAWELKQLR---HPVISPLLHYKKLARLLTA------NGWNWLDSWVHDGRFRPDYVPG 295

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGR A+       +P        IR A I  P  KL+ AD SQ+E RILA ++    
Sbjct: 296 GVVTGRWATSGGGALQLP------HLIRGAVIPDPGWKLVVADASQLEPRILAAMSADRG 349

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + +   +S D++  + A          + + R HAK      +YG +             
Sbjct: 350 MVEA-GSSGDLYEGIVA--------SGAVETRAHAKLAMLGAMYGAT-----------TG 389

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI-------HYDEINSP--KS 877
           E+   + +    +P   + +E       +   V T  GR          YDE  +P  ++
Sbjct: 390 ESGRLMPKLARAYPRAIQLVEDAARAGERGEIVSTQLGRSSPRGEDTGTYDESLTPAERA 449

Query: 878 SIRNINE---RAAINAPIQGSAADITRRAMISVHK---SLEDHKLATK---MLLQIHDEL 928
           ++R       R   N  +QG+AA+     M S+     SL + K  T+   ++  +HDE+
Sbjct: 450 ALRERGRSWGRFTRNFIVQGTAAEWALCWMASIRSRLVSLGEGKWLTESPHLVFFLHDEV 509

Query: 929 VFEVPEEEITTASQII---VHSMEKACLPKINLRVPLKVNI 966
           V   PEE   T + +I    H   +    ++ +  PL V I
Sbjct: 510 VVHAPEELAETVAALIDDAAHEAGRLLFGELPVTFPLTVAI 550


>gi|330974698|gb|EGH74764.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 74

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 8/77 (10%)

Query: 7  LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
          L LVDGSS++YRAF+A P L+      P  A+ G  NML  L    R++   S  AV+F+
Sbjct: 6  LVLVDGSSYLYRAFHALPPLATS----PTGAVKGVLNMLKSL----RRQYPDSPLAVVFN 57

Query: 67 YPAVTFRNEIYPDYKAN 83
              TFR+ +Y DYKAN
Sbjct: 58 AKGGTFRDALYNDYKAN 74


>gi|229472255|gb|ACQ72642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 98/220 (44%), Gaps = 40/220 (18%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENS 774
           PNL  +P   +     R+ F + PT  ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVPSDAEF----RKLFRASPTLVMVGADLAGIELRMLAHYLARYDEGRYADVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH+  A +I G++        R+  KT+ ++ +YG    +L      P+    D  K+
Sbjct: 57  -DIHQENADKI-GIS--------RKQVKTVTYAFLYGAGDAKLGRSYD-PQLSEKDAKKK 105

Query: 835 -------YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
                  Y    PG+ + +   K+   ++GY+    GRR   D                A
Sbjct: 106 GKEIRQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDGRRCSVD------------GSHKA 152

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +N  +QGSA  + +R ++  H++   H+L    L  IHDE
Sbjct: 153 LNYLLQGSAGILAKRWLLINHEN--PHELCCSQLAFIHDE 190


>gi|262212135|gb|ACY35684.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342221|gb|ACY54621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQDNLKLLNLCCSQLAFIHDE 192


>gi|229472377|gb|ACQ72703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLAR-------YDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA----TQLRIPRSEAADYI 832
              ++  +I   N +K+    RR  KT+ ++ +YG    ++      QL    + A D  
Sbjct: 50  GDVLLNGDIHQENADKIG-MSRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKDKE 108

Query: 833 KR--YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            R  Y    PG+ + +   K+   ++GY++   GRR   D                A+N 
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 156 LLQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
 gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
          Length = 645

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 54/265 (20%)

Query: 587 GIQIDQDLLKQVSA--EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           GI+ID+D ++      E+SK    L + + +L+G    L +P  +  +         G +
Sbjct: 206 GIEIDKDFVEAAVQLDELSK--AGLNQQLQELTG----LENPNSV--LQMRGWLLDHGLE 257

Query: 645 TKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQR 698
           T++   K  A+ LEQ      PI   +K +L  RQ L+K       ++ N    + R++ 
Sbjct: 258 TESLGKKAVAELLEQ------PIDENLKQVLVLRQQLAKSSVKKYQAMQNFACSDNRSRG 311

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLG 730
           +  FY   +  TGR A     LQN+P                            +   L 
Sbjct: 312 LFQFY--GANRTGRFAGRGIQLQNLPQNHMSDLSEARSLVKQSNFEMLNILYGNVPNVLS 369

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           + +R AF+     K I +D+S IE R++A ++      +VF+N  DI+   A+++FGV +
Sbjct: 370 ELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGGDIYCASASQMFGVPV 429

Query: 791 EK--VSPQMRRHAKTINFSIIYGIS 813
           EK  V+  +R+  K    ++ YG S
Sbjct: 430 EKHGVNGHLRQKGKIAELALGYGGS 454


>gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 662

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 166/424 (39%), Gaps = 95/424 (22%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGAKT 645
           GI ID +L KQ  A  +K+  SL   + + +G + N +S  Q+ D L    LK  S  K 
Sbjct: 224 GIAIDLELAKQAVALDAKSRESLMAALKERTGLE-NPNSVIQMLDWLEQHGLKTDSLGKK 282

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK--IKSTYADSLPNHINKRTQRVHTFY 703
              +   TAQ+         P+   +L  ++L+K  +K   A  +    + R + +  FY
Sbjct: 283 NVQELLKTAQE---------PLRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFY 333

Query: 704 SLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRR 735
              +  TGR A     LQN+P                            I   L Q IR 
Sbjct: 334 --GANRTGRFAGRHIQLQNLPQNHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRT 391

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--V 793
           AF+     K + +D+S IE R+++ +A      + F    DI+   A+++FGV + K  +
Sbjct: 392 AFVPRAGMKFVVSDFSAIEARVISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGI 451

Query: 794 SPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +  +R+  K    +  YG S   L    A  + IP  E  + ++ +    P I ++  + 
Sbjct: 452 NGNLRQKGKIAELACGYGGSVGALKAMGALDMGIPEEELGNLVQSWRSANPHIVDFWWQV 511

Query: 850 KNFVR------------------QNG--YVETIFGRRIHY-------DEINSPKSSIRNI 882
              V+                  Q+G  ++E   GRR+ Y       +       +   I
Sbjct: 512 DGAVKTTIKQRIPVWVNNIRFFCQSGMLFIELPSGRRLSYVKPRIGENRFGGESVTYEGI 571

Query: 883 N-----ERAAINAP------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
                 E+     P      +QG + DI   AM ++            ++  +HDEL+ E
Sbjct: 572 GATKKWEQLESYGPKFVENIVQGISRDILCYAMQTLR--------CCAIVGHVHDELIIE 623

Query: 932 VPEE 935
            P++
Sbjct: 624 CPKD 627


>gi|32442291|gb|AAP82216.1| DNA polymerase [Podovirus SOG]
          Length = 401

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 112/249 (44%), Gaps = 20/249 (8%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC--GDNPIIKNILEWRQ 676
           ++FNL S KQ+G+ L     +     T TGQ       L++I       PI   +L  ++
Sbjct: 169 QEFNLGSRKQIGEYLM-DFGWEPKRFTPTGQPIVDEGTLKKITHIHEAKPIADFLLYQKR 227

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRR 735
           +++I+S + D+L     +   RVH       T+TGR++   PN+  +P + +  G + R 
Sbjct: 228 IAQIQS-WLDAL-----EEDGRVHGSVIPNGTITGRMSHNHPNVAQVPAVYSPFGVECRA 281

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            +       L+  D S +ELR+LAH            +   I+ +V  +I   N +    
Sbjct: 282 CWTVEEGNVLVGVDASGLELRMLAHY---------MNDEEYINEVVNGDIHTTNQKLAGL 332

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + R  AKT  ++++YG    ++ + +   R +  +   R     P +    EK +   ++
Sbjct: 333 ESRDTAKTFIYALVYGAGDEKIGSVVGGSRKQGKELKNRSLTNLPALKTLKEKVQQAAKR 392

Query: 856 NGYVETIFG 864
            G+++ + G
Sbjct: 393 -GFLKGLDG 400


>gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 644

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 116/263 (44%), Gaps = 51/263 (19%)

Query: 587 GIQIDQDLLKQ--VSAEISKN-LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           GI ID   +KQ  V  E S+  L++L ++I +L     N +S +Q+ D L       +G 
Sbjct: 206 GIAIDMTFVKQAVVMDEHSREKLMALMQDITNLE----NPNSVQQMKDWLAD-----NGL 256

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVH 700
           +T T   K  A   E +     P+   +LE RQ L+K       ++ N +  + R + + 
Sbjct: 257 ETDTLGKKAVA---EMLKTAPEPL-GTVLELRQQLAKSSVKKYTAMENAVCNDGRARGMF 312

Query: 701 TFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQK 732
            FY   +  TGR +     LQN+P                            I   L + 
Sbjct: 313 QFY--GANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFDALTLLYDSIPEVLSEL 370

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AFI     K I AD+S IE R++A +A       VF+N  DI+   A+++F V +EK
Sbjct: 371 IRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGGDIYCASASQMFNVPVEK 430

Query: 793 --VSPQMRRHAKTINFSIIYGIS 813
             V+  +R+  K    ++ YG S
Sbjct: 431 HGVNGHLRQKGKIAELALGYGGS 453


>gi|229472611|gb|ACQ72820.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA----TQL--RIPRSEA 828
            DIH+  A +I G++        RR  KT+ ++ +YG    ++      QL  +   +E 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTEG 106

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +  + Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKRVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++ T  L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIKTYQLAFIHDE 192


>gi|189427035|ref|YP_001950134.1| DNA polymerase I [Ralstonia phage RSL1]
 gi|189233347|dbj|BAG41704.1| DNA polymerase I [Ralstonia phage RSL1]
          Length = 1050

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 111/313 (35%), Gaps = 77/313 (24%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHIN-----KRTQRVHTFYSLASTMTGRLASLEPN 719
           N ++    E++ L+K+ STY  +    +N          +   Y L  T  GRL S +PN
Sbjct: 572 NKVVALYGEYQALTKVISTYVKAWSRRLNTALDESTDDSLRADYFLVDT--GRLGSKDPN 629

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL---- 775
           LQ IP +  L + ++  F++ P   L+  DYS  E+RI +  +    +   F   L    
Sbjct: 630 LQQIPSRGPLSKLLKTLFVARPGYLLVRFDYSAHEVRIWSVASGDKVIAAAFRTGLELRQ 689

Query: 776 ------------------DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG------ 811
                             D H +     F   ++K  P +R   K + F +IYG      
Sbjct: 690 AFIQDPSDANKKALKEKGDFHILNVQRFFKKLVDKDHP-LRDAVKKVVFGVIYGKGAETL 748

Query: 812 --------ISPFR--------------------------------LATQLRIPRSEAADY 831
                   IS  R                                L       RSE A  
Sbjct: 749 GEDTKEGDISSLRAEVAKLYDESLTCKDAKRLARINEMLEELDDKLTALFNEDRSEYAQG 808

Query: 832 I-KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           I  + F  F   H +I++      +  YV +  GR  H     +    I +   R   NA
Sbjct: 809 IVDKMFGEFKAGHRWIQRMSKMAEEKFYVYSFNGRVRHLYAAMTGDKRIISKQVRRGTNA 868

Query: 891 PIQGSAADITRRA 903
           PIQG A++I  +A
Sbjct: 869 PIQGVASEIGNKA 881


>gi|229472173|gb|ACQ72601.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472401|gb|ACQ72715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + ++ M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKQWMVHTHNVIKLNQIKAYQLAFVHDE 192


>gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4]
 gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Lactobacillus gasseri ATCC 33323]
 gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4]
          Length = 644

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 168/442 (38%), Gaps = 108/442 (24%)

Query: 580 VSQMEITGIQIDQDLLKQ---VSAEISKNLLSLEENIYD--------LSGEKFNLSSPKQ 628
           VSQ E     +DQD+  +   +  ++  N +  +EN +D        L+G   N +SP Q
Sbjct: 186 VSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQKLTGLA-NPNSPLQ 244

Query: 629 LGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           L D L  + +   S +K    Q       L Q   G    +  +L  RQL    S     
Sbjct: 245 LKDWLNQRGMNIDSLSKASVAQ-------LLQTTTGK---VHQVLSLRQLLSKSSVKKYQ 294

Query: 688 LPNHINKRTQRVHTFYSL-ASTMTGRLASLEPNLQNIP---------------------- 724
                  R  RVH       +  TGR A     +QN+P                      
Sbjct: 295 AMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNTTAL 354

Query: 725 ------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
                 +   L Q IR AFI         AD+S +E R++A ++      + F N+ DI+
Sbjct: 355 SMLYDSVPDVLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAFANNEDIY 414

Query: 779 RMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYI 832
              A+++FGV + K  V+ ++R+  K    ++ YG S   L    AT L +   E    +
Sbjct: 415 CASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGATNLGLTEEELHSLV 474

Query: 833 KRYFHRFPGIHEY---IEKTK---------------NFVRQNG--YVETIFGRRIHYDEI 872
           + + +  P I ++   I+K                  F+ ++G  ++    GR++ Y + 
Sbjct: 475 QMWRNASPHIVQFWWDIDKAAKECIKSHLPQATHGIKFIYRSGCMFLRLRSGRKLCYSK- 533

Query: 873 NSPKSSIRNINERA----AINAP-----------------IQGSAADITRRAMISVHKSL 911
             PK  I      +     INA                  +Q ++ D+   AM    + L
Sbjct: 534 --PKIGINRFGSESITFMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAM----RRL 587

Query: 912 EDHKLATKMLLQIHDELVFEVP 933
           ED      +++ IHDE V + P
Sbjct: 588 ED--AGNPVVMHIHDEAVIDAP 607


>gi|229472189|gb|ACQ72609.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472331|gb|ACQ72680.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472419|gb|ACQ72724.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472601|gb|ACQ72815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + ++ M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|229472403|gb|ACQ72716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472503|gb|ACQ72766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDP----RFRELFLPSPGQVMVAADLSGIELRMLSH------FLARYDGGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ----LRIPRSE--AADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++       L  P+++    + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSPKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N  
Sbjct: 110 RAAYIDAIDGLDKLLASIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 650

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 42/243 (17%)

Query: 668 IKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +K ILE RQL   + IK           + R + +  FY   +  TGR A     +QN+P
Sbjct: 279 VKKILELRQLMAKTSIKKYETMQRARCEDGRMRGLLQFY--GANRTGRWAGRLVQVQNLP 336

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       I   L Q IR AFI     + I AD+S IE R
Sbjct: 337 QNHLPDLDDARNFIRTGQFDKVEFLYDSIPDTLSQLIRTAFIPKEGNRFIVADFSAIEAR 396

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISP 814
           ++A  A       VF N+ DI+   A+++F V +EK  ++  +R+  K    ++ YG S 
Sbjct: 397 VIAWYAGEQWRLDVFNNNGDIYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSV 456

Query: 815 FRLAT---QLRIPRSEAADYIKRYFHRFPGIHEYI----EKTKNFVRQNGYVETIFGRRI 867
             L +   +  IP  E    +K +    P I ++     +  K  +R+   V   FG + 
Sbjct: 457 GALMSMDKKKNIPEDELPGLVKDWRDASPHITKFWWDVDKAAKKAIRERTTVVLQFGLKF 516

Query: 868 HYD 870
            YD
Sbjct: 517 IYD 519


>gi|194100384|ref|YP_002003958.1| gp5 [Enterobacteria phage 13a]
 gi|193201431|gb|ACF15908.1| gp5 [Enterobacteria phage 13a]
          Length = 704

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 121/307 (39%), Gaps = 53/307 (17%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I               +++   +    
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVN 965
            L          +  +HDE+      EEI   +Q+++ + ++A        N R  L   
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVGCRTEEI---AQVVIETAQEAMRWVGDHWNFRCLLDTE 693

Query: 966 IKVSNNW 972
            K+  NW
Sbjct: 694 GKMGPNW 700


>gi|289976608|gb|ADD21653.1| DNA polymerase [Caulobacter phage Cd1]
          Length = 797

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 121/303 (39%), Gaps = 54/303 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISADYSQIELR 756
           +H   +  ST+T R +S  PNLQN+P   D    ++  FIS   P  K+I +D++ +E+ 
Sbjct: 433 IHHMLNHTSTVTARFSSSNPNLQNLP--KDGKSLVKSVFISRFGPEGKVIQSDFTALEVY 490

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN---------IEKVS--PQMRRHAKTIN 805
           I A +     L    ++ LD+H +  ++  G+          +EKV      R  AK  +
Sbjct: 491 IQAILTDCRQLILDLKDGLDMHCVRVSQAEGIPYEEAYRLCVVEKVKEWSTKRTKAKIFS 550

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK----------------- 848
           F   YG     +A    + R E    I+    R+P I ++ E+                 
Sbjct: 551 FQRAYGAGAALIAESTGMAREEVDALIEAENTRYPEIEKFYERLTKKIMANSVPTNKFAQ 610

Query: 849 -------TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI----------NAP 891
                  T NF R++ Y +T  G+   Y E  +P+   +    R             N  
Sbjct: 611 HPDLPHLTCNF-RKSTY-QTPDGKLYSYRESPAPEFLAKAPASRGGCTTSFSPTEIKNYV 668

Query: 892 IQGSAADITRRAM-ISVHKSLEDHKLATKMLL--QIHDELVFEVPEEEITTASQIIVHSM 948
           +QG   +  + AM +++           + LL  Q+HD L  +  +E     + ++   M
Sbjct: 669 VQGGGGEWAKAAMWLAIRAFYARGNFGGRGLLVNQVHDALYADAAKEVALEVAALLHACM 728

Query: 949 EKA 951
           E A
Sbjct: 729 EAA 731


>gi|262342273|gb|ACY54647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342305|gb|ACY54663.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342315|gb|ACY54668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342327|gb|ACY54674.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342329|gb|ACY54675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H           +N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARCDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLSNLCCSQLAFIHDE 192


>gi|229472339|gb|ACQ72684.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+       +E    
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLAR-------YEGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK--- 833
              ++  +I   N +K+    RR  KT+ ++ +YG    ++        SE     K   
Sbjct: 50  GDVLLNGDIHQENADKIGIS-RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKE 108

Query: 834 ---RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +   K+   ++GY++   GRR   D                A+N 
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + ++ M+  H  ++ +++    L  IHDE
Sbjct: 156 LLQGSAGCVAKQWMVHTHDVIKLNQIKAYQLAFIHDE 192


>gi|47934612|gb|AAT39744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 254

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 30/214 (14%)

Query: 745 LISADYSQIELRILAHIAKITPLYQVF-----ENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           L+  D S +ELR+LAH  K     +       ++  D+H         VN        R 
Sbjct: 50  LVGCDASGLELRMLAHYMKDDDYVRTVCEGSSKDGTDVHT--------VNQRAAGLSTRD 101

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           +AKT  ++ +YG    ++ + +     + +    ++  + P + + IE+      + G+V
Sbjct: 102 NAKTFIYAFLYGAGDAKIGSIVGGSAKDGSKLKAKFLDQTPALRKLIERVSKQAAK-GWV 160

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
             + GRRI           +R+  E AA+N+ +QG+ A + ++A++     ++ +K   K
Sbjct: 161 PGLDGRRIW----------VRS--EHAALNSLLQGAGAIVMKKALVIFSDKIKTNKWNVK 208

Query: 920 MLLQIHDELVFE----VPEEEITTASQIIVHSME 949
           ++  +HDE  FE    + EE    A   IV + E
Sbjct: 209 LVANVHDEFQFECSKDIAEEAGKAAKMSIVEAGE 242


>gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
 gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
          Length = 655

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TG L +LE   +++P    L Q IR AFI  P  + I AD+S IE R++A +A  T   Q
Sbjct: 357 TGNLEALELLHESVP--DTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTLQ 414

Query: 770 VFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
            F    D++   A+ +FGV +EK  V+ ++R+  K    +  +G S
Sbjct: 415 AFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGS 460


>gi|229472439|gb|ACQ72734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR--LATQLRIPRSEAADYI 832
            DIH+  A +I G++        RR  KT+ ++ +YG    +  L+   ++P  +A    
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLPEKDATTKG 106

Query: 833 KR----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           K     Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|312195229|ref|YP_004015290.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
 gi|311226565|gb|ADP79420.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
          Length = 586

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 49/284 (17%)

Query: 665 NPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           +P+I  +L WR+  +I +TY    L  H+     R+   +  +    GR+ + +  L N+
Sbjct: 292 HPVIDELLAWRKAERIATTYGHRWLATHVGA-DGRLRGRWHGSDGAAGRM-TADAGLHNL 349

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P       ++R A ++ P  + + AD  QIE R+LA ++    L +      D++  VAA
Sbjct: 350 P------AEMRVAVVAEPGHRFVRADLGQIEPRVLAVVSGDPELTRATRQD-DLYAPVAA 402

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            + GV+        R  AK    + +YG +            + AA    R      G+ 
Sbjct: 403 RL-GVD--------RPTAKVAVLAAMYGQT------------TGAAGQALRQMRETYGVA 441

Query: 844 EYIEKTKNFVRQNGY--------VETIFGRRIHYDEINSPKSSIRNINERAAI------N 889
                  +   ++          + T  GRRI    +  P  +  +I   AA       N
Sbjct: 442 LAYLDAADAAGRSAALGAAPATPLRTFGGRRIPLRAL--PADADGDIGRAAAAYGRFARN 499

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           A +QG+AA++ +   ++V ++L    L   ++L +HDEL+ +VP
Sbjct: 500 AVVQGAAAELFKAWAVTVRQAL--IPLGGTIVLCLHDELLLQVP 541


>gi|194100330|ref|YP_002003760.1| gp5 [Enterobacteria phage EcoDS1]
 gi|193201325|gb|ACF15804.1| gp5 [Enterobacteria phage EcoDS1]
          Length = 723

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 118/320 (36%), Gaps = 61/320 (19%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAFISPPTKK--------LISA 748
           R+H   +    +TGR     PN+  +P      G+  R AF +   KK         +  
Sbjct: 420 RMHGSINPCGAVTGRATHSSPNMAQVPANGAPYGETCRGAFGAAWNKKDGKPDPWIQVGV 479

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI--EKVSPQMRR------- 799
           D S +ELR L + A        F+       +V  +I   N     ++P ++R       
Sbjct: 480 DASGLELRCLGNRA------APFDGGEYAKTVVEGDIHWANAVNAGLAPNVKRDKSNHEH 533

Query: 800 -----HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
                +AKT  ++ +YG    ++   +   + E A  +K++    P I +  E   N + 
Sbjct: 534 EAFRNNAKTFIYAFLYGAGAAKIGLIVGGGKKEGAALMKKFIEGTPAIKDLREAVSNTLI 593

Query: 855 QNG--------------YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            +               ++  + GRRIH   I SP S         A+NA +QG  A + 
Sbjct: 594 SDSKWVDGENIVKWKRRWLRGLDGRRIH---IRSPHS---------ALNALLQGDGAVVC 641

Query: 901 RRAMISVHKSLED----HKLATKM--LLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +  ++   + LE+    H        +  +HDEL      +EI      I     +    
Sbjct: 642 KHWIVETERMLEEAGYIHGWEGDFAYMAWVHDELQIACRTQEIAEEVVKIAQLAMRKVGE 701

Query: 955 KINLRVPLKVNIKVSNNWQE 974
             N +  L    K+   W+E
Sbjct: 702 FYNFKCVLDTEGKIGPTWKE 721


>gi|262212381|gb|ACY35807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 41/219 (18%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-- 775
           PNL  +P  +DL    RR F++ P + ++ AD S IELR+L+H       Y  F ++L  
Sbjct: 1   PNLAQVP--SDLTH--RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTY--FGDNLLN 54

Query: 776 -DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA---TQLRIP---RSEA 828
            DIH++ A +I G+         R+  KT+ ++ +YG    ++     +L  P   +++ 
Sbjct: 55  GDIHQLNADKI-GIT--------RKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKAKAKG 105

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +  + +    PG+ + +   K+   + G+V+ I GR+I    ++SP           A 
Sbjct: 106 REIKEAFIEAIPGLSDLLSAVKSAANR-GFVKGIDGRKI---LVDSPHK---------AP 152

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +R M+  +    D+      L  IHDE
Sbjct: 153 NYLLQGSAGVVAKRWMVIAN----DNPFCCSQLAFIHDE 187


>gi|229472561|gb|ACQ72795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA----TQL--RIPRSEA 828
            DIH+  A +I G++        RR  KT+ ++ +YG    ++      QL  ++  ++ 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKVATAKG 106

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +  + Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|229472505|gb|ACQ72767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQHNLKLLNLCCSQLAFVHDE 192


>gi|59897263|gb|AAX12058.1| exodeoxyribonuclease [Enterobacteria phage T5]
          Length = 276

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 34/234 (14%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    +L +VDG++  +R          KH+    N+   F +     +Q+  K   A  
Sbjct: 1   MASRRNLMIVDGTNLGFRF---------KHN----NSKKPFASSYVSTIQSLAKSYSART 47

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPK-----------IPEMLLPQLP-LVRLATQAFGIP 108
             V+ D     FR E  P+YK NR +           + E     L     L    F  P
Sbjct: 48  TIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTF--P 105

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
              I+G EADD+ A   YI +  G     V +ISTD D   L++     +      +  +
Sbjct: 106 TFTIRGVEADDMAA---YIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHL 162

Query: 166 EHVIKKWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             + +   +   E+ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+
Sbjct: 163 RDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDII 216


>gi|157168417|ref|YP_001456774.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
 gi|74268849|emb|CAJ29727.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
          Length = 634

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 124/302 (41%), Gaps = 48/302 (15%)

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR----- 695
           S  +T TG+ K   Q  E +   D+P+I         +  K    D + +++ K      
Sbjct: 328 SWPRTPTGRLKADKQAFESL---DHPLID--------AHRKVADTDHILDYLGKTDAMAQ 376

Query: 696 -TQRVHTFYS-LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            T RVH     L ++ TGR+A  +P LQ  P       + R+  +    +  +S D+S +
Sbjct: 377 ITGRVHPQVGILGASATGRMAYSQPELQQFP------SEARKIILWDKPEGAVSIDWSSV 430

Query: 754 ELRILAHIAKITPLYQVF-ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           E  I+A+ A+ T     F  +  D++    A I    IE      R+ AK +  + +YG 
Sbjct: 431 EPVIMANCARDTEFLAGFNHHGADLY----APITSQGIE------RKTAKVVMLAAMYGQ 480

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR--RIHYD 870
               LA +L +   EA    K+ F   P    +++  +    Q+G + T  GR   I  D
Sbjct: 481 GSRSLAERLGVSVDEAKSLRKKVFEPMPRTDAFMKAIQATSEQHGRIMTADGRMLTIPTD 540

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
              +P +          +N   QGSA  +    M  V        ++  + L +HDELV 
Sbjct: 541 PTGAPMA-------YRGVNYFCQGSAYSV----MSEVINRAYGEGISDGIYLAMHDELVV 589

Query: 931 EV 932
           + 
Sbjct: 590 DA 591


>gi|326633014|ref|YP_004306603.1| flap endonuclease [Enterobacteria phage SPC35]
 gi|321272208|gb|ADW80100.1| flap endonuclease [Enterobacteria phage SPC35]
          Length = 291

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 34/234 (14%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    +L +VDG++  +R          KH+    N+   F +     +Q+  K   A  
Sbjct: 16  MASRRNLMIVDGTNLGFRF---------KHN----NSKKPFASSYVSTIQSLAKSYSART 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPK-----------IPEMLLPQLP-LVRLATQAFGIP 108
             V+ D     FR E  P+YK NR +           + E     L     L    F  P
Sbjct: 63  TIVLGDKGKSAFRLEHLPEYKGNRDEKYSQRTEEEKALDEQFFEYLKDAFELCETTF--P 120

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
              I+G EADD+ A   YI +  G     V +ISTD D   L++     +      +  +
Sbjct: 121 TFTIRGVEADDMAA---YIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHL 177

Query: 166 EHVIKKWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             + +   +   E+ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+
Sbjct: 178 RDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDII 231


>gi|229472527|gb|ACQ72778.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFRATPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + ++ M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer]
 gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer]
          Length = 605

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 129/295 (43%), Gaps = 43/295 (14%)

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR------TQ 697
           +T TG  K T +DL  ++  D+P+    +  R+L+++     D +  ++ K       T 
Sbjct: 305 RTPTGGLKAT-KDL--LDGFDHPLT---IAQRKLAEV-----DKVLGYLTKVERQAAVTG 353

Query: 698 RVHTFYS-LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           R H     L ++ TGR+A   P LQ  P       K  R  I+   + L S D+SQIE  
Sbjct: 354 RCHPQVGVLGASATGRMAYSMPELQQFP-------KDARPIITDDGQGLTSIDWSQIEPV 406

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
            +A++A        FE   D++  +     G+ + K   + R  AK +  + +YG+    
Sbjct: 407 TMANMAGDVGFLIPFEAGEDLYEPIQRSC-GLPMTK---EGRDIAKVVLLATMYGMGVNG 462

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA +++     A    ++     P   +++ + +    Q G + T  GR +  D+    +
Sbjct: 463 LALKIKHTVESAQQIRRQMLAAMPESAKWMARVQGIADQYGRIITAAGRILPVDDGGVFR 522

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
                     A+N  +QGSA D+    ++     +E+  L   + L +HDEL+ +
Sbjct: 523 ----------AVNYTVQGSAYDVLASTIV----RMEEAGLGDHLQLAMHDELIVD 563


>gi|60219516|emb|CAI56770.1| hypothetical protein [Homo sapiens]
          Length = 2149

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 134/310 (43%), Gaps = 42/310 (13%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
            S L+K  + E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI 
Sbjct: 1779 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1838

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564
              +L +    +L+  ++S  I  +  +   EH     A   S +I      L   L  E 
Sbjct: 1839 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1897

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L  V+ +++ P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +
Sbjct: 1898 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1957

Query: 625  SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662
            S   + ++LF +LK P                      +G K + G+  +T++D+     
Sbjct: 1958 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQLSTSKDVLNKLK 2017

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714
              +P+   ILEWR+++   +     L     +R + ++ F  +        + T TGR+ 
Sbjct: 2018 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 2072

Query: 715  SLEPNLQNIP 724
              EPN+QN+P
Sbjct: 2073 FTEPNIQNVP 2082


>gi|46401866|ref|YP_006958.1| flap endonuclease [Enterobacteria phage T5]
 gi|119684|sp|P06229|EXO5_BPT5 RecName: Full=Exodeoxyribonuclease; AltName: Full=5'-exonuclease;
           AltName: Full=T5FEN
 gi|46015845|pdb|1UT5|A Chain A, Divalent Metal Ions (Manganese) Bound To T5 5'-Exonuclease
 gi|46015846|pdb|1UT5|B Chain B, Divalent Metal Ions (Manganese) Bound To T5 5'-Exonuclease
 gi|46015847|pdb|1UT8|A Chain A, Divalent Metal Ions (Zinc) Bound To T5 5'-Exonuclease
 gi|46015848|pdb|1UT8|B Chain B, Divalent Metal Ions (Zinc) Bound To T5 5'-Exonuclease
 gi|45775044|gb|AAS77176.1| flap endonuclease [Enterobacteria phage T5]
 gi|51512068|gb|AAU05267.1| 5'-3' exonuclease [Enterobacteria phage T5]
 gi|224882|prf||1203256A exonuclease,5'
          Length = 291

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 34/234 (14%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    +L +VDG++  +R          KH+    N+   F +     +Q+  K   A  
Sbjct: 16  MASRRNLMIVDGTNLGFRF---------KHN----NSKKPFASSYVSTIQSLAKSYSART 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPK-----------IPEMLLPQLP-LVRLATQAFGIP 108
             V+ D     FR E  P+YK NR +           + E     L     L    F  P
Sbjct: 63  TIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTF--P 120

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
              I+G EADD+ A   YI +  G     V +ISTD D   L++     +      +  +
Sbjct: 121 TFTIRGVEADDMAA---YIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHL 177

Query: 166 EHVIKKWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             + +   +   E+ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+
Sbjct: 178 RDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDII 231


>gi|9627454|ref|NP_041982.1| DNA polymerase [Enterobacteria phage T7]
 gi|118856|sp|P00581|DPOL_BPT7 RecName: Full=DNA polymerase; AltName: Full=T7 DNA polymerase
 gi|15591|emb|CAA24412.1| unnamed protein product [Enterobacteria phage T7]
 gi|37956666|gb|AAP33936.1| gene 5 [Enterobacteria phage T7]
 gi|265524990|gb|ACY75853.1| DNA polymerase [Enterobacteria phage T7]
          Length = 704

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 121/307 (39%), Gaps = 53/307 (17%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I               +++   +    
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVN 965
            L          +  +HDE+      EEI   +Q+++ + ++A        N R  L   
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVGCRTEEI---AQVVIETAQEAMRWVGDHWNFRCLLDTE 693

Query: 966 IKVSNNW 972
            K+  NW
Sbjct: 694 GKMGPNW 700


>gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus]
 gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus]
          Length = 605

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 165/385 (42%), Gaps = 53/385 (13%)

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            EK+L   E + + M+    +    G+ +D + L +   E     +   E +    G + 
Sbjct: 227 AEKILGDQETVHRVMLRRTGK----GLAVDHEYLTRYQEEKDAERIQ-HEALLAAHGLEG 281

Query: 622 NLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
                K++ + L    + P+   +T TG  K T +DL  ++  D+P+    +  R+L+++
Sbjct: 282 GAGKGKKIVEYLAEIGQLPADWPRTPTGGLKAT-KDL--LDGFDHPLT---IAQRKLAEV 335

Query: 681 KSTYADSLPNHINKR------TQRVHTFYS-LASTMTGRLASLEPNLQNIPIKTDLGQKI 733
                D +  ++ K       T R H     L ++ TGR+A   P LQ  P       K 
Sbjct: 336 -----DKVLGYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPELQQFP-------KD 383

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
            R  I+   + L S D+SQIE   +A++A        FE   D++  +     G+ + K 
Sbjct: 384 ARPIITDDGQGLTSIDWSQIEPVTMANMAGDVGFLIPFEAGEDLYEPIQRSC-GLPMTK- 441

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
             + R  AK +  + +YG+    LA +++     A    ++     P   +++ + +   
Sbjct: 442 --EGRDIAKVVLLATMYGMGVNGLALKIKHTVESAQQIRRQMLAAMPESAKWMARVQGIA 499

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-LE 912
            Q G + T  GR +  D+    +          A+N  +QGSA D+    ++ + ++ L 
Sbjct: 500 DQYGRIITAAGRILPVDDGGVFR----------AVNYTVQGSAYDVLASTIVRMERAGLG 549

Query: 913 DHKLATKMLLQIHDELVF--EVPEE 935
           DH     + L +HDEL+   EV +E
Sbjct: 550 DH-----LQLAMHDELIVDTEVSDE 569


>gi|229472511|gb|ACQ72770.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472585|gb|ACQ72807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.0 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|2982125|pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
           Nucleoside Triphosphate, And Its Processivity Factor
           Thioredoxin
 gi|50513551|pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE AND
           DDATP
 gi|50513555|pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513559|pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template
 gi|50513563|pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513565|pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513571|pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513575|pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template And An Incoming Nucleotide
 gi|52695798|pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Ddctp At The Insertion Site
 gi|52695802|pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
           The Templating Strand
 gi|52695806|pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Damp At The Elongation Site
 gi|52695810|pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Dcmp At The Elongation Site
 gi|56553842|pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
           Insertion Site.
 gi|56554410|pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
           Acetylaminofluorene-Adducted Dna
 gi|56554414|pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Ctp As The Incoming
           Nucleotide.
 gi|56554418|pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Atp As The Incoming
           Nucleotide
          Length = 698

 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 121/307 (39%), Gaps = 53/307 (17%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 409 KIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 468

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 469 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF 522

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I               +++   +    
Sbjct: 523 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKW 582

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 583 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 630

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVN 965
            L          +  +HDE+      EEI   +Q+++ + ++A        N R  L   
Sbjct: 631 GLKHGWDGDFAYMAWVHDEIQVGCRTEEI---AQVVIETAQEAMRWVGDHWNFRCLLDTE 687

Query: 966 IKVSNNW 972
            K+  NW
Sbjct: 688 GKMGPNW 694


>gi|262212393|gb|ACY35813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 41/219 (18%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-- 775
           PNL  +P  +DL    RR F++ P + ++ AD S IELR+L+H       Y  F ++L  
Sbjct: 1   PNLAQVP--SDL--TYRRLFMATPGQVMVGADLSGIELRMLSHYLARYDTY--FGDNLLN 54

Query: 776 -DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA---TQLRIP---RSEA 828
            DIH++ A +I G+         R+  KT+ ++ + G    ++     +L  P   +++ 
Sbjct: 55  GDIHQLNADKI-GIT--------RKLVKTVTYAFLCGAGNEKIGYSYDRLLSPQKAKAKG 105

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +  + +    PG+ + +   K+   + G+V+ I GR+I  D   SP           A+
Sbjct: 106 REIKEAFIEAIPGLSDLLSAVKSAANR-GFVKGIDGRKILVD---SPHK---------AL 152

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +R M+  +    D+      L  IHDE
Sbjct: 153 NYLLQGSAGVVAKRWMVIAN----DNPFCCSQLAFIHDE 187


>gi|213582238|ref|ZP_03364064.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 124

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 142 KDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
           K   QL+SP   + D  ++  +D   + K++G+ P ++     L G S   +PG+ GIG 
Sbjct: 1   KGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGP 60

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           K+A  LL ++ NLE I  +   + +K R++ +  + E A L R +  L+TD+ I   L+ 
Sbjct: 61  KSATQLLVQFQNLEGIYAHLDEVPEKWRKK-LETHKEMAFLCRDIARLQTDLHIDGNLQQ 119

Query: 262 LIL 264
           L L
Sbjct: 120 LRL 122


>gi|262212353|gb|ACY35793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P     G + RR F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPS----GPEFRRLFTATPGQVMVGADLSGIELRMLAHYLAR-------YDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR--LATQLRIPRSEA----AD 830
              ++  +I  VN +K+    R+  K + ++ +YG    +  L    ++P ++A    A+
Sbjct: 50  ADILLNGDIHQVNADKIGI-TRKLVKNVTYAFLYGAGDVKIGLTYDKQLPPNKAKKKGAE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG  + +   K      G+V+ I GR++  D   SP           A+N 
Sbjct: 109 IRAAYVAAIPGPDDLLTAIK-VAGDRGFVKAIDGRKVLLD---SPHK---------ALNF 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  I +R ++  +     H +    L  IHDE
Sbjct: 156 LLQGSAGVIAKRWLVIANH--HTHDICCSQLAFIHDE 190


>gi|37956773|gb|AAP34041.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 125/307 (40%), Gaps = 53/307 (17%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGSVNPNGAVTGRATHAFPNLAQIPSVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI---HEYIEKT--KNFVRQNG------ 857
           +YG    ++   +   +    +  K++    P I    E I++T  ++F    G      
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLKNTPAIAALRESIQQTLVESFQWVAGEQQVKW 588

Query: 858 ---YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
              +++ + GR+IH   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKIH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVN 965
            L          +  +HDE+      EEI   +Q+++ + ++A        N R  L   
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVGCRTEEI---AQVVIETAQEAMRWVGDHWNFRCLLDTE 693

Query: 966 IKVSNNW 972
            K+  NW
Sbjct: 694 GKMGLNW 700


>gi|116666722|pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
 gi|116666726|pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
          Length = 704

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 121/307 (39%), Gaps = 53/307 (17%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I               +++   +    
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVN 965
            L          +  +HDE+      EEI   +Q+++ + ++A        N R  L   
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVGCRTEEI---AQVVIETAQEAMRWVGDHWNFRCLLDTE 693

Query: 966 IKVSNNW 972
            K+  NW
Sbjct: 694 GKMGPNW 700


>gi|262212223|gb|ACY35728.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+ AKT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLAKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472607|gb|ACQ72818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     RR F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDAEF----RRLFKASPGQIMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA------AD 830
              ++  +I   N +K+    RR  KT+ ++ +YG    +L        SE+       +
Sbjct: 50  ADVLLHGDIHQENADKIGIS-RRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +   K+   ++G++    GRR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCSVD------------GAHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 156 LLQGSAGVLAKRWLLINHNNTRE--LCCSQLAFIHDE 190


>gi|37956721|gb|AAP33990.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 125/307 (40%), Gaps = 53/307 (17%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGSVNPNGAVTGRATHAFPNLAQIPSVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI---HEYIEKT--KNFVRQNG------ 857
           +YG    ++   +   +    +  K++    P I    E I++T  ++F    G      
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLKNTPAIAALRESIQQTLVESFQWVAGEQQVKW 588

Query: 858 ---YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
              +++ + GR+IH   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKIH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVN 965
            L          +  +HDE+      EEI   +Q+++ + ++A        N R  L   
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVGCRTEEI---AQVVIETAQEAMRWVGDHWNFRCLLDTE 693

Query: 966 IKVSNNW 972
            K+  NW
Sbjct: 694 GKMGLNW 700


>gi|109289304|gb|ABG29147.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 161

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 8/125 (6%)

Query: 144 LMQLVSPTTCLYDTVK------EEKID-IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
           L+QLV+   C+   V+      E  I+ I   +  +GI P ++   + L GD+ D + G+
Sbjct: 1   LLQLVNENNCIIKVVRNPGNFTEYSIETINEFVDIYGINPNQIPDYKGLAGDTSDRLKGV 60

Query: 197 PGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPIT 256
            GIG K A  LL E+G+LE I  N  +I   K +E +    E+A   +KL +L  DV + 
Sbjct: 61  AGIGPKKAVSLLNEFGSLEAIYENIGKI-SGKTKEYLENDYESAHFCKKLAILNPDVEMD 119

Query: 257 IPLEH 261
             +++
Sbjct: 120 TDIDN 124


>gi|297192970|ref|ZP_06910368.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151581|gb|EFH31247.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 406

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 137/343 (39%), Gaps = 60/343 (17%)

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMT 710
           T   +LE+I   D+P +K ++E+++L +I + +  S L + +  R  R    Y    +++
Sbjct: 88  TRRWELEEI---DHPAVKPLIEYKKLYRIWTAHGWSWLQDWV--RDGRFRPGYLPGGSVS 142

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR  +       IP      + IRRA ++    +L+ AD  Q+E R+LA I++   L +V
Sbjct: 143 GRWTTNGGGALQIP------KVIRRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEV 196

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             +  D++  ++   F  +        R HAK      IYG +       L   R     
Sbjct: 197 AGHDGDLYTSLSDRAFSGD--------RDHAKIALLGAIYGQTSGDGLKNLAALR----- 243

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-------DEINSPKSSIR--- 880
                  RFP    Y++       +   V T  GR           DE   P+  +    
Sbjct: 244 ------RRFPRAVAYVDDAAKAGEEGRLVRTWLGRTSPRAAGAGDDDEAGIPQEPVEAAP 297

Query: 881 ----------NINERA----AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
                     + N RA      N  +QGSAAD     + ++ ++    +   +++   HD
Sbjct: 298 ADGEFTPGYASTNARARGRFTRNFVVQGSAADWALLMLAALRQATAGMR--AELVFFQHD 355

Query: 927 ELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVNI 966
           E++   P EE    ++ I  + E A      +  +R P  + +
Sbjct: 356 EVIVHCPAEEARDVAEAIRSAGELAGRIAFGETPVRFPFTIAV 398


>gi|296123324|ref|YP_003631102.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
 gi|296015664|gb|ADG68903.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
          Length = 686

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 128/277 (46%), Gaps = 28/277 (10%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+ T  S   + TGR+ + + + Q+IP++      +R A +    + LISADY   E R+
Sbjct: 424 RLRTRLSQNRSRTGRITASQYSCQSIPLR------LRPAVVVGEGRTLISADYRAFEWRV 477

Query: 758 LAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
            A +++ + L   F +   D++  + ++   +  +  S   R   K  +   +Y      
Sbjct: 478 AAALSQDSQLLTDFGSPDFDLYAFLVSQFDDLKHDVSS--ARPIIKGDSIQALYDFIDDG 535

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            A+     ++  A+ I+R    FP +  + +        +G+V T  GR I   E     
Sbjct: 536 TASD---GKTSVAEAIQRL---FPRLMTWRQSVAAEALSSGFVTTPLGRVIDLTEGQD-- 587

Query: 877 SSIRNIN-ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
               ++N +R A+N  IQ  AA++ ++A+I++ + L       ++LL +HD ++ +    
Sbjct: 588 ----DLNRQRQAVNNLIQAHAAELFKQALIAMDQRLPP---GARILLPMHDGVLVDCLTH 640

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           ++   ++ I  +M     P   + VPL+V I+   NW
Sbjct: 641 QLDAVARGIRAAMTGFSNP---MPVPLQVVIETGQNW 674


>gi|229472499|gb|ACQ72764.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R  FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDAD----CRELFITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + A+ 
Sbjct: 51  DILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+   +E  K   + +  +  I GR+I    +NSP           A+N  
Sbjct: 110 RRAYPDAIPGLERLVEAVKTKAKVDRSLRAIDGRKIL---VNSPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVIAKRWLLITHDRLQG--IEHERYAFIHDE 191


>gi|32442281|gb|AAP82211.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 27/237 (11%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ-WKTTAQDLEQINCGDNPIIKNILEWRQL 677
           E+FNL SP Q+   L  KL +    KTK+G+ +K   ++L  I       +K +  W+ L
Sbjct: 162 EEFNLGSPTQINKRL-DKLGWNPTVKTKSGESYKICPENLATIPDDAPQAVKGLKAWKVL 220

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP----------IKT 727
                   + L    ++   RVH        +T R A   PN+ NIP           K 
Sbjct: 221 ETRWKLAQEWLEK--SQGDGRVHGTVITTGAVTHRAAHRGPNMANIPSVPHNKDGIFWKM 278

Query: 728 D--LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY--QVFENSLDIHRMVAA 783
           D     + R+ F  P  + L+  D + I+LR+LAH     P+Y  QV +   DIH     
Sbjct: 279 DGMYAAECRQVFKVPEGRLLVGTDAAGIQLRVLAHYMN-DPVYTEQVIDG--DIH----- 330

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
             F +N      + R  AKT  ++ + G    ++A  L     +A   +K ++   P
Sbjct: 331 -TFNMNALGRHCKDRPTAKTFIYAFLLGAGVGKIAEILGCNGGQANVAMKNFYEALP 386


>gi|229472371|gb|ACQ72700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEVRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + ++ M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|229472319|gb|ACQ72674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 36/218 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-- 775
           PNL  +P   D     R+ F + P + ++ AD S IELR+LAH        +  E  L  
Sbjct: 1   PNLAQVPSDKDF----RKLFQATPGQVMVGADLSGIELRMLAHYLARYDAGRYAEVLLHG 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA----TQL--RIPRSEAA 829
           DIH+  A +I G++        R+  KT+ ++ +YG    +L      QL  +  + +  
Sbjct: 57  DIHQENADKI-GIS--------RKQVKTVTYAFLYGAGDAKLGRSYDPQLNEKEAKRKGK 107

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +  + Y    PG+   +   K+   ++GY+    GRR   D                A+N
Sbjct: 108 EIRQAYMDAVPGLETLVTAVKSKA-ESGYINLCDGRRCSVD------------GSHKALN 154

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +QGSA  + +R M+  H +  +  L    L  +HDE
Sbjct: 155 YLLQGSAGVLAKRWMLINHDNTRE--LCCSQLAFVHDE 190


>gi|228969098|ref|ZP_04130012.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228790587|gb|EEM38274.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 388

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 36/199 (18%)

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL------------KQVSAEISKN 605
           PK  +  +  ++  ++ P+I V++  E  GI+I+++ L            + V  EI  +
Sbjct: 187 PKFNLVHIYKLFREIEMPLIAVLTTAERKGIKINEEFLSNDVKQILQAKLQSVKKEILNH 246

Query: 606 LLSL-----------EENIYD----LSGEKFNLSSPKQLGDILFTK-------LKFPSGA 643
           L S            ++N Y+    L+   FN++SP  L   L+         +++  G 
Sbjct: 247 LGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKGC 306

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-QRVHTF 702
           K+   + KT  + L + N   +P+I  ILE+R+L K+ S++ +SLP         ++H  
Sbjct: 307 KSLISKLKTDRKTLIR-NLSMHPVIPLILEYRRLVKLISSFCNSLPKEQQGTIDNKIHPI 365

Query: 703 YSLASTMTGRLASLEPNLQ 721
           Y+   T TGR++   PNL+
Sbjct: 366 YNSVGTKTGRMSCSSPNLK 384


>gi|262342131|gb|ACY54576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  ++     R+ F   P + ++ AD S IELR+LAH +A+       F+  + 
Sbjct: 1   PNLAQVPSDSEF----RKLFQPTPGQIMVGADLSGIELRMLAHYLAR-------FDRGVY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA----TQLRIPR--SEAAD 830
              ++  +I  VN +K+    RR  KT+ ++ +YG    ++     + L   R  S+  +
Sbjct: 50  ADILLHGDIHQVNADKIGIS-RRAVKTVTYAFLYGAGDAKIGLSYDSSLSPTRAKSKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               +     G+ + +E  K    + GYV +I  R+I   +++SP           A+N 
Sbjct: 109 IRTAFVEAIDGLAQLLEAIKT-ASEKGYVRSIDTRKI---KVDSPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q  A  I +R M+  H + ++  L    L  IHDE
Sbjct: 156 LLQSGAGIIAKRWMVINHANTQE--LCCSQLAFIHDE 190


>gi|229472461|gb|ACQ72745.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     RR F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDAEF----RRLFKASPGQIMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL--RIPRSEAADYIKR 834
              ++  +I   N +K+    RR  KT+ ++ +YG    +L      ++  S+A    K 
Sbjct: 50  ADVLLHGDIHQENADKIGIS-RRAVKTVTYAFLYGAGDAKLGKSFDAQLTESQAKKKGKE 108

Query: 835 ----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +   K+   ++GY+    GRR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDGRRCAVD------------GAHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 156 LLQGSAGVLAKRWLLINHNNTRE--LCCSQLAFVHDE 190


>gi|229472351|gb|ACQ72690.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472367|gb|ACQ72698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472447|gb|ACQ72738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|182682942|ref|YP_001837066.1| flap endonuclease [Enterobacteria phage EPS7]
 gi|182630654|gb|ACB97586.1| flap endonuclease [Enterobacteria phage EPS7]
          Length = 291

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 34/229 (14%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           +L +VDG++  +R          KH+    N+   F +     +Q+  K   A    V+ 
Sbjct: 21  NLMIVDGTNLGFRF---------KHN----NSKKPFASSYVSTIQSLAKSYSARTTIVLG 67

Query: 66  DYPAVTFRNEIYPDYKANRPK-----------IPEMLLPQL-PLVRLATQAFGIPAIEIQ 113
           D     FR E  PDYK NR +           + E     L     L    F  P   I+
Sbjct: 68  DKGKSVFRLEHLPDYKGNRDEKYAQRTEEEKALDEQFFEYLRDAFELCETTF--PTFTIR 125

Query: 114 GFEADDIIATYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK 170
           G EADD+ A   YI +  G     V +ISTD D   L++     +      +  +  + +
Sbjct: 126 GVEADDMAA---YIVKLIGHLYDHVWLISTDGDWDTLLTDRVSRFSFTTRREYHLRDMYE 182

Query: 171 KWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
              +   ++ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+
Sbjct: 183 HHNVDDVDQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDII 231


>gi|229472457|gb|ACQ72743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHSVIKLNQIEAYQLAFVHDE 192


>gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 650

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 35/179 (19%)

Query: 668 IKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +K +LE RQ L+K       ++ N +  + R + +  FY   +  TGR +     LQN+P
Sbjct: 283 LKEVLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFY--GANRTGRFSGRHIQLQNLP 340

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       +   L Q IR AFIS   +K I AD+S IE R
Sbjct: 341 QNHLADLEYARSLVRQGSFAALELLYESVPDVLSQLIRTAFISKEGRKFIVADFSAIEAR 400

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           +L+ +AK      VF N  DI+   A  +F  N+ K   +  +R++ K    S  YG S
Sbjct: 401 VLSWLAKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGS 459


>gi|229472485|gb|ACQ72757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 34/218 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI-------SPFRLATQLRIPRSEAA 829
              ++  +I  VN +K+    R+  KT+ ++ +YG        S  +L +  +  R +  
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKR-KGK 107

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +  + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N
Sbjct: 108 EIREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALN 154

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +QG++A + +R M+   ++++D  L    L  +HDE
Sbjct: 155 YCLQGNSAILAKRWMVINQQNIKDLNLCCSQLAFVHDE 192


>gi|30387474|ref|NP_848283.1| DNA polymerase [Yersinia pestis phage phiA1122]
 gi|30314111|gb|AAP20519.1| DNA polymerase [Yersinia pestis phage phiA1122]
          Length = 704

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 121/307 (39%), Gaps = 53/307 (17%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDEITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I               +++   +    
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP S         A+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKVH---VRSPHS---------ALNTLLQSAGALICKLWIIKTEEMLVEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVN 965
            L          +  +HDE+      EEI   +Q+++ + ++A        N R  L   
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVGCRTEEI---AQVVIDTAQEAMRWVGDHWNFRCLLDTE 693

Query: 966 IKVSNNW 972
            K+  NW
Sbjct: 694 GKMGPNW 700


>gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 641

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 39/205 (19%)

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQR 698
           G +T++   KT A  L  ++     ++K +LE RQ L+K       ++ N +  + R + 
Sbjct: 252 GVETESLDKKTVAALLTNVS----ALLKEVLELRQQLAKSSVKKYQAMQNTVCADNRARG 307

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLG 730
           +  FY   +  TGR +     LQN+P                            +   L 
Sbjct: 308 MFQFY--GANRTGRFSGRHIQLQNLPQNHLANLEYARSLVRQGNFAALELLYESVSDVLS 365

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           Q IR AFI    +K I AD+S IE R+L+ +AK      VF N  DI+   A  +F  N+
Sbjct: 366 QLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRMDVFANDGDIYCATAGRMFHCNV 425

Query: 791 EK--VSPQMRRHAKTINFSIIYGIS 813
            K   +  +R+  K    +  YG S
Sbjct: 426 VKHGENGHLRQKGKQAELACGYGGS 450


>gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 558

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 132/331 (39%), Gaps = 52/331 (15%)

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           +I   D+P ++ +LE+++L +I   +  S L N +  R  R    +    T+TGR  +  
Sbjct: 249 EIQSLDHPAVRPLLEYKRLYRIWVAHGWSWLQNWV--RDGRFRPEFHAHGTVTGRWVTNG 306

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
                IP      + IRRA ++ P   L+ AD +Q+E R+LA I++   L +V   + D+
Sbjct: 307 GGALQIP------KVIRRAVVADPGHCLVVADAAQLEPRVLAAISRDPGLMEVAARADDL 360

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           ++ V+   F  +        R  AK      IYG +           + +    +     
Sbjct: 361 YQSVSERAFSGD--------RAQAKLAVLGAIYGQT-----------KGDGLKNLAALRR 401

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGR----------------RIHYDEINSPKSSIRN 881
           RFP    Y+++      +   V T  GR                 I  +E      S+  
Sbjct: 402 RFPRAVAYVDEAARAGEEGRLVRTWLGRTCPPAAGAGEDAAEEAGIPQEEAGDGSRSVPG 461

Query: 882 ---INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
                 R A N  +QGSAAD     + ++ +      LA +++   HDE++   P EE  
Sbjct: 462 DARARGRFARNFVVQGSAADWALLLLAALRRGCAG--LAAELVFFQHDEVIVHCPVEEAD 519

Query: 939 TASQIIVHSMEKA---CLPKINLRVPLKVNI 966
               ++  +   A      ++ +RVP    +
Sbjct: 520 AVVTVLEEASRLATRLAFGEVPVRVPFTTAV 550


>gi|262212227|gb|ACY35730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++A+ S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAANLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA------D 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++        S A       +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKRGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G++E I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIEAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 32/151 (21%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------------------------- 724
           + R + +  FY   +  TGR A     +QN+P                            
Sbjct: 321 DGRARGMFQFY--GANRTGRWAGRIIQMQNLPQNHLPDLAEARALVRCGDFDGVELLYED 378

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +   L Q IR AF+  P  K I +D+S IE R+LA  A  T   +VFE   DI+   A++
Sbjct: 379 VPDTLSQLIRTAFVPRPGYKFIVSDFSAIEARVLAWFAGETWRQEVFEKGGDIYCASASQ 438

Query: 785 IFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           +F V +EK  V+  +R+  K    ++ YG S
Sbjct: 439 MFKVPVEKHGVNGHLRQKGKIAELALGYGGS 469


>gi|262212165|gb|ACY35699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADPAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G++  + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIRALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQDNLKLLNLCCSQLAFIHDE 192


>gi|229472253|gb|ACQ72641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|229472239|gb|ACQ72634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  NS
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNS 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|262342143|gb|ACY54582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       ++R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RLRALFLPSPGQAMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCPQLAFIHDE 192


>gi|168069855|ref|XP_001786601.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660901|gb|EDQ48585.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 6/100 (6%)

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           ++++ G+ P +++ ++ L GD+ DN PG+ GIG KTA  L+QE+G++E IL +   +  K
Sbjct: 248 LLEERGLTPAQIIDVKGLMGDASDNYPGVKGIGEKTAHKLVQEHGSVEGILASL-ELLSK 306

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
             R  I    +   LSR+L  +  + P+      L ++DC
Sbjct: 307 TVRAKIEADLDMLHLSRRLATIHCEAPVA-----LAMDDC 341


>gi|262212409|gb|ACY35821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     RR F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDAEF----RRLFKASPGQIMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK--- 833
              ++  +I   N +K+    RR  KT+ ++ +YG    +L        +E+    K   
Sbjct: 50  ADVLLHGDIHQENADKIGIS-RRAVKTVTYAFLYGAGDAKLGKSYDAQLTESQTKKKGKE 108

Query: 834 ---RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +   K+   ++G++    GRR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCGGRRCSVD------------GAHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            IQGSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 156 LIQGSAGVLAKRWLLINHDNTRE--LCCSQLAFIHDE 190


>gi|221504718|gb|EEE30383.1| hypothetical protein TGVEG_032240 [Toxoplasma gondii VEG]
          Length = 461

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI-ASH 60
           +K+  L ++DG+  ++R+ +  P +     G PV AI GF    ++ L   R+  +  SH
Sbjct: 62  EKKKTLAVIDGTCVVFRSHFGMPEVL-DGGGFPVQAIIGF----FRSLAAIRRALLHPSH 116

Query: 61  FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             V+FD P +   R  I+  YK +R + P  L+ Q  ++    +   I  +   G EADD
Sbjct: 117 LVVVFDGPESRESRKAIFDGYKGHRSETPASLINQFAVILRLCERMQIGTLSEAGVEADD 176

Query: 120 IIAT 123
           +IAT
Sbjct: 177 VIAT 180


>gi|262342093|gb|ACY54557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     R+ F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDANF----RKLFTATPGQVMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE------AAD 830
              ++  +I   N +K+    RR  KT+ ++ +YG    +L        SE        +
Sbjct: 50  ASILLHGDIHQENADKIGIS-RRQVKTVTYAFLYGAGDSKLGRSYDPQLSEQQAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +   K+   ++GY+     RR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDSRRCTVD------------GSHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  I +R M+  + + ++  L    L  IHDE
Sbjct: 156 LLQGSAGVIAKRWMLINYTNTKE--LCCSQLAFIHDE 190


>gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932]
 gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196]
 gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196]
          Length = 652

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 165/425 (38%), Gaps = 94/425 (22%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI++D +L++       +    L +    ++G   N +SP QL   L  K+ F   + T
Sbjct: 205 TGIKVDTELIENAIECDKRYTEKLTKEAIKITGLN-NPNSPAQLKKWLSDKVGFEITSLT 263

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTF 702
           K    ++  + L+Q+   D+  +  ILE R+L   + IK   A  L    + R + +  F
Sbjct: 264 K----ESIPEILKQV---DDENVVRILELRKLMSKTSIKKYEAMKLAKGNDNRVRGLLQF 316

Query: 703 YSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIR 734
           Y   +  TGR A     +QN+P                            +   L Q IR
Sbjct: 317 Y--GANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDLIELLYDSVPDVLSQLIR 374

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE--K 792
            AFI     + I +D+S IE R++A +A       VF +   I+   A+++F + IE  K
Sbjct: 375 TAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGKIYEASASQMFKIPIENIK 434

Query: 793 VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY--- 845
              ++R+  K    S  YG S   L    A ++ +   E    +  + +  P I ++   
Sbjct: 435 KGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEELQPIVTAWRNANPNITKFWWD 494

Query: 846 ----------------IEKTKNFVRQNG--YVE------------------TIFGRRIHY 869
                           I+    F+   G  ++E                  T  G +I Y
Sbjct: 495 VDKAAKKAIKDRTIVEIQHGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKITY 554

Query: 870 DEINSPKSSIRNINERAA--INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           + +       + I+      +   +Q +A D  R AM +V  +         +++ +HDE
Sbjct: 555 EGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDA------GYSIVMHVHDE 608

Query: 928 LVFEV 932
           LV +V
Sbjct: 609 LVIDV 613


>gi|37956877|gb|AAP34143.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 114/304 (37%), Gaps = 47/304 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I               +++   +    
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L          +  +HDE+      EEI      I     +      N R  L    K+
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIEIAQEAMRWVGDHWNFRCLLDTEGKM 696

Query: 969 SNNW 972
             NW
Sbjct: 697 GPNW 700


>gi|229472393|gb|ACQ72711.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D     R   I+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDAD----CRELLITRPGWKLVDSDLAGIELRVFAH------YLGRYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT----QLR--IPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T    QL     R + A+ 
Sbjct: 51  DILLNDDIHQVNADKIGIS-RRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+   +E  K   + +  +  I GR+I    +NSP           A+N  
Sbjct: 110 RRAYLDAIPGLERLVEAVKTKAKVDRSLRAIDGRKIL---VNSPHK---------ALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVIAKRWLLITHDRLQG--IEHERYAFIHDE 191


>gi|229472271|gb|ACQ72650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIKAYQLAFIHDE 192


>gi|37956824|gb|AAP34091.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 114/304 (37%), Gaps = 47/304 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I               +++   +    
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L          +  +HDE+      EEI      I     +      N R  L    K+
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIEIAQEAMRWVGDHWNFRCLLDTEGKM 696

Query: 969 SNNW 972
             NW
Sbjct: 697 GPNW 700


>gi|229472589|gb|ACQ72809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|229472289|gb|ACQ72659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     RR F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDAEF----RRLFKASPGQIMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA------AD 830
              ++  +I   N +K+    RR  KT+ ++ +YG    +L        SE+       +
Sbjct: 50  ADVLLHGDIHQENADKIGIS-RRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +   K+   ++G++    GRR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 156 LLQGSAGVLAKRWLLINHNNTRE--LCCSQLAFVHDE 190


>gi|237839683|ref|XP_002369139.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211966803|gb|EEB01999.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 461

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI-ASH 60
           +K+  L ++DG+  ++R+ +  P +     G PV AI GF    ++ L   R+  +  SH
Sbjct: 62  EKKKTLAVIDGTCVVFRSHFGMPEVL-DGGGFPVQAIIGF----FRSLAAIRRALLHPSH 116

Query: 61  FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             V+FD P +   R  I+  YK +R + P  L+ Q  ++    +   I  +   G EADD
Sbjct: 117 LVVVFDGPESRESRKAIFDGYKGHRSETPASLINQFAVILRLCERMQIGTLSEAGVEADD 176

Query: 120 IIAT 123
           +IAT
Sbjct: 177 VIAT 180


>gi|47934814|gb|AAT39845.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 166

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGD-ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + ++   +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 14  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 68

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 69  K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFW 125

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 126 CVPEGHKLIGCDASGLELRMLAH 148


>gi|262342109|gb|ACY54565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     R+ F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDAEF----RKLFKASPNQVMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAAD 830
              ++  +I   N +K+    RR  KT+ ++ +YG    +L          +  + +  +
Sbjct: 50  ADVLLHGDIHQENADKIGIS-RRAVKTVTYAFLYGAGDSKLGKSFDAQLTEQQAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +   K+   ++G++    GRR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVNAVKSKA-ESGFINLCDGRRCSVD------------GSHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + +R M+  ++S  +  L    L  IHDE
Sbjct: 156 LLQGSAGVLAKRWMLINYESTRE--LCCSQLAFIHDE 190


>gi|221484522|gb|EEE22816.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 461

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI-ASH 60
           +K+  L ++DG+  ++R+ +  P +     G PV AI GF    ++ L   R+  +  SH
Sbjct: 62  EKKKTLAVIDGTCVVFRSHFGMPEVL-DGGGFPVQAIIGF----FRSLAAIRRALLHPSH 116

Query: 61  FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             V+FD P +   R  I+  YK +R + P  L+ Q  ++    +   I  +   G EADD
Sbjct: 117 LVVVFDGPESRESRKAIFDGYKGHRSETPASLINQFAVILRLCERMQIGTLSEAGVEADD 176

Query: 120 IIAT 123
           +IAT
Sbjct: 177 VIAT 180


>gi|26988997|ref|NP_744422.1| DNA polymerase [Pseudomonas putida KT2440]
 gi|24983817|gb|AAN67886.1|AE016420_8 DNA polymerase [Pseudomonas putida KT2440]
          Length = 695

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 125/330 (37%), Gaps = 67/330 (20%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAFISPPTKKLISADYSQ 752
           ++  R+H   +     TGR     PN+  +P   +  G+  R  F  P    L+ AD S 
Sbjct: 382 EKQGRIHGSVNPNGAATGRATHAYPNVAQVPASGSPYGKDCRELFTVPLGWLLVGADASG 441

Query: 753 IELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEK------VSPQMRRHAKTI 804
           +ELR LAH        +  +  L  DIH     +  G+  EK      +    R  AKT 
Sbjct: 442 LELRCLAHFMARYDGGKYVDILLNGDIH-WANVQAMGITSEKRDDHNTLHKLYRDGAKTF 500

Query: 805 NFSIIYGISPFRLAT----QLRIPRSEAADY-------------------------IKRY 835
            ++ +YG    ++ T     +   ++   DY                         +K  
Sbjct: 501 IYAFLYGAGDEKVGTIVFGMVAKAKALGLDYQHLLDVFFNGQDNPDEEALKAAGKKLKAT 560

Query: 836 FHR-FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           F R  P + + ++  K   ++ G++  + GR +H       KS+       AA+N  +QG
Sbjct: 561 FLRKTPALKKLVKAVKEAAKR-GHLVGLDGRHVHV------KSA------HAALNYLLQG 607

Query: 895 SAADITRRAMISVHKSLEDHKLA------TKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           + A   ++ ++ +   L+   L             +HDE+      E I     +IV   
Sbjct: 608 AGALACKQWLVFLDDELQARGLKHGWDGDYAFCAWVHDEVQIACRNEAIA----VIVREA 663

Query: 949 EKACLPK----INLRVPLKVNIKVSNNWQE 974
            +AC+ K     N R PL    K+  NW E
Sbjct: 664 AEACVAKAGEAFNFRCPLAGESKMGLNWAE 693


>gi|229472453|gb|ACQ72741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR--LATQLRIPRSEAADYI 832
            DIH+  A +I G++        RR  KT+ ++ +YG    +  L+   ++   +AA   
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDAATKG 106

Query: 833 KR----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           K     Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|262212191|gb|ACY35712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRVLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472603|gb|ACQ72816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     RR F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDAEF----RRLFKASPGQIMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE------AAD 830
              ++  +I   N +K+    RR  KT+ ++ +YG    +L        SE        +
Sbjct: 50  ADVLLHGDIHQENADKIGIS-RRQVKTVTYAFLYGAGDAKLGKSYDAQLSEQQAKKRGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +   K+   ++GY+    GRR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDGRRCSVD------------GSHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + +R ++  +++  +  L    L  +HDE
Sbjct: 156 LLQGSAGILAKRWLLINYENTRE--LCCSQLAFVHDE 190


>gi|83753886|pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
          Length = 698

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 120/307 (39%), Gaps = 53/307 (17%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  IP +++  G++ R AF +         K  + A  
Sbjct: 409 KIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGI 468

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    H ++  +I   N        R +AKT  +  
Sbjct: 469 DASGLELRCLAH------FMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF 522

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG     +   +   +    +  K++    P I               +++   +    
Sbjct: 523 LYGAGDEAIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKW 582

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 583 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLVEK 630

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVN 965
            L          +  +HDE+      EEI   +Q+++ + ++A        N R  L   
Sbjct: 631 GLKHGWDGDFAYMAWVHDEIQVGCRTEEI---AQVVIETAQEAMRWVGDHWNFRCLLDTE 687

Query: 966 IKVSNNW 972
            K+  NW
Sbjct: 688 GKMGPNW 694


>gi|157311100|ref|YP_001469095.1| gp096 [Lactococcus phage KSY1]
 gi|108861440|gb|ABG21639.1| gp096 [Lactococcus phage KSY1]
          Length = 895

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 26/213 (12%)

Query: 783 AEIFGVNIEKVSPQMRRHAK-----TINFSIIYGISPFRLATQLR------IPRSEAADY 831
            +++ VN+   +  +R + K       NFS++YG     L    R      + + +A ++
Sbjct: 687 GDVYCVNVPTHNIVIRHNDKVSIQGNCNFSLLYGAQSKTLRDYARTNMGIDMSQEDADEF 746

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + +F  +PG+  +    K F+ ++GY+++  GRR +   + S     +    R +IN P
Sbjct: 747 HRAFFESYPGLVSWHNACKRFLDEHGYIQSPLGRRRYLPTVYSKDWGEKESAYRRSINTP 806

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQ--IHDELVFEVPEEEIT-TASQIIVHSM 948
           +QG  +DI   AM ++   L+  +      +   IHD ++    E++    A  II   M
Sbjct: 807 VQGLGSDICVSAMTTI---LQHPEYGKTFFVHGTIHDAILVTAYEDQAEHVAYDIIKKIM 863

Query: 949 EKACLPKINLRVP------LKVNIKVSNNWQEE 975
           E    P I  ++P      L  +  V+++W  E
Sbjct: 864 EH---PPILDKLPTTNGLYLIADADVTDSWGGE 893



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           +T TGR +S  PNLQ +P  +    ++R    +P   K I  DYSQ+ELR  A+ A+   
Sbjct: 314 TTKTGRTSSSNPNLQQVPQDS----RVRNIIAAPKGMKFIECDYSQLELRCAAYCAQEPA 369

Query: 767 LYQVFENSLDIH 778
           + + ++N  D+H
Sbjct: 370 MMEAYKNGADLH 381


>gi|262212079|gb|ACY35656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212083|gb|ACY35658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + RR M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILARRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472431|gb|ACQ72730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 36/218 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP-LYQVFENSL 775
           PNL  +P   +     RR F + P + ++ AD S IELR+LAH +A+     Y       
Sbjct: 1   PNLAQVPSDAEF----RRLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYASILLHG 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA------A 829
           DIH+  A +I G++        RR  KT+ ++ +YG    +L        SE+       
Sbjct: 57  DIHQENADKI-GIS--------RRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGK 107

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +  + Y    PG+ + +   K+   ++G++    GRR   D                A+N
Sbjct: 108 EIRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALN 154

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 155 YLLQGSAGVLAKRWLLINHDNTRE--LCCSQLAFVHDE 190


>gi|229472227|gb|ACQ72628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+       +E    
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLAR-------YEGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK--- 833
              ++  +I   N +K+    RR  KT+ ++ +YG    ++        SE     K   
Sbjct: 50  GDVLLNGDIHQENADKIGIS-RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKE 108

Query: 834 ---RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +   K+   ++GY++   GRR   D                A+N 
Sbjct: 109 IRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 156 LLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|229073437|ref|ZP_04206573.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           cereus F65185]
 gi|228709744|gb|EEL61782.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           cereus F65185]
          Length = 464

 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 36/199 (18%)

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL------------KQVSAEISKN 605
           PK  +  +  ++  ++ P+I V++  E  GI+I ++ L            + V  EI  +
Sbjct: 263 PKFNLVHIYKLFREIEMPLIAVLTTAERKGIKISEEFLSNDVKQILQAKLQSVKKEILNH 322

Query: 606 LLSL-----------EENIYD----LSGEKFNLSSPKQLGDILFTK-------LKFPSGA 643
           L S            ++N Y+    L+   FN++SP  L   L+         +++  G 
Sbjct: 323 LGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKGC 382

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-QRVHTF 702
           K+   + KT  + L + N   +P+I  ILE+R+L K+ S++ +SLP         ++H  
Sbjct: 383 KSLISKLKTDRKTLIR-NLSMHPVIPLILEYRRLVKLISSFCNSLPKEQQGTIDNKIHPI 441

Query: 703 YSLASTMTGRLASLEPNLQ 721
           Y+   T TGR++   PNL+
Sbjct: 442 YNSVGTKTGRMSCSSPNLK 460


>gi|262342285|gb|ACY54653.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H           +N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARCDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D                A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVDP------------PHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLSNLCCSQLAFIHDE 192


>gi|229472509|gb|ACQ72769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSH------FLARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RRLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|229472363|gb|ACQ72696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|229472423|gb|ACQ72726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + ++ M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGVVAKQWMVHTHDVIKLNQIKAYQLAFVHDE 192


>gi|294630609|ref|ZP_06709169.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292833942|gb|EFF92291.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 566

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 166/431 (38%), Gaps = 111/431 (25%)

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF-NLSSPKQLGDIL---- 633
           V ++M   G+    D+ +QV              ++DL GE++     P++L ++     
Sbjct: 163 VAAEMNSAGLPWRADVHRQV--------------LHDLLGERYAGGGEPRRLAELADEVS 208

Query: 634 --FTKLKFP------------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
             F     P            +G K ++    T   +L  +   D+P ++ +LE+++L +
Sbjct: 209 AAFGHRVRPDLPAEVVKAFARAGVKVRS----TRRWELRSV---DHPAVEPLLEYKRLYR 261

Query: 680 IKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           I   +  S L + +  R  R    +    T+TGR  +       IP      + IRRA +
Sbjct: 262 IWVAHGWSWLQDWV--REGRFRPEFLAGGTVTGRWVTNGGGALQIP------KVIRRAVV 313

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P  +L+ AD  Q+E R+LA I++   L +V   + D+++ V+   F  +        R
Sbjct: 314 ADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRTSDLYQSVSDRAFAGD--------R 365

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQ 855
             AK      +YG +              + D +K       RFP    Y+++      +
Sbjct: 366 AQAKLAVLGAVYGQT--------------SGDGLKNLAALRRRFPRAVAYVDEAARAGEE 411

Query: 856 NGYVETIFGRRIHYDEINS---------PK--------------------------SSIR 880
              V T  GR       NS         P+                          SS  
Sbjct: 412 GRLVRTWLGRTCPPAAANSEDATQEAGLPQDDPAERPGGGSGDRTNGDRGWLPGYASSDA 471

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               R A N  +QGSAAD     + ++ ++  D  +A +++   HDE++   P+EE  T 
Sbjct: 472 RARGRFARNFVVQGSAADWALLLLAALRRTCRD--MAAELVFFQHDEVIVHCPKEEADTV 529

Query: 941 SQIIVHSMEKA 951
            + I  + E A
Sbjct: 530 VEAIREAAELA 540


>gi|262212395|gb|ACY35814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 37/203 (18%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL---DIHRMVAAEIFGVNI 790
           RR F++ P + ++ AD S IELR+L+H       Y  F ++L   DIH++ A +I G+  
Sbjct: 7   RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTY--FGDNLLNGDIHQLNADKI-GI-- 61

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLA---TQLRIP---RSEAADYIKRYFHRFPGIHE 844
                 +R+  KT+ ++ +YG    ++     +L  P   +++  +  + +    PG+ +
Sbjct: 62  ------IRKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKVKAKGREIKEAFIEAIPGLSD 115

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +   K      G+V+ I GR+I  D   SP           A+N  +QGSA  + +R M
Sbjct: 116 LLSAVK-CAANRGFVKGIDGRKILVD---SPHK---------ALNYILQGSAGVVVKRWM 162

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  +    D+      L  IHDE
Sbjct: 163 VIAN----DNPFCCSQLAFIHDE 181


>gi|283457405|ref|YP_003361981.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283133396|dbj|BAI64161.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 668

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 134/329 (40%), Gaps = 54/329 (16%)

Query: 667 IIKNILEWRQLSKIKS----TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           +I  IL +++L +I +    T+AD+    +++   R H    +    TGR  +       
Sbjct: 361 LIDPILRYKKLYRIWTANGWTWADTW---VSEGAFRPH--LEVGGAATGRWGASGGGALQ 415

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           +P +      IR+A  +P  + L   D SQIE RILA +++   L      + D++  +A
Sbjct: 416 LPAE------IRQAVQAPEGQVLTVTDGSQIEPRILAALSRDEALASAGRGA-DLYAGIA 468

Query: 783 --AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
             A + GV + +     R HAK    +I+YG               E    +      FP
Sbjct: 469 ELARLKGVGLTE-----RSHAKVGMLAIMYGGR-----------SGEIGALLPHVAALFP 512

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRI-----HYDEI----NSPKSSIRNINE-----RA 886
              E+ E+        G V T  GR        + EI    +SP +  R ++      R 
Sbjct: 513 QAMEFTERAARIGEAGGQVTTFLGRTSPPVDERFREIVADRSSPAAESRAVSTARAHGRM 572

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHK-----LATKMLLQIHDELVFEVPEEEITTAS 941
             N  +QG+AA+     M +V   L   +     + T+++  +HDEL+   PE E     
Sbjct: 573 TRNFIVQGTAAEWALCWMGAVRSRLLSERIFGMPMRTRIVYFLHDELLLCGPELEADRVE 632

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           +I+     +A       RVP+   + V+ 
Sbjct: 633 RIVREGAAEAARLLFG-RVPVDFPVSVAR 660


>gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
 gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
          Length = 643

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 117/259 (45%), Gaps = 49/259 (18%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENI---YDLSGEKFNLSSPKQLGDILFTK-LKFPSG 642
           GI ID+ L   V + I  + +  EEN+    +L+G + N +SP QL + L  K L+  S 
Sbjct: 204 GILIDEVL---VDSAIKFDGILREENMDRAIELTGLE-NPNSPLQLKEWLNKKGLEIDSL 259

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINK--RTQRV 699
           AK          +D+E         IK +LE RQ LSK      D++ N   K  R + +
Sbjct: 260 AK----------KDVESALKNTEGDIKEVLELRQELSKSSVRKYDAMKNVKGKDNRARGL 309

Query: 700 HTFYSLAST--MTGRLASLEP----NLQNIPIKTDL--------------------GQKI 733
             FY    T   +GRL  ++     NL+++ +   L                     Q I
Sbjct: 310 IQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYETMEILYESPSDILSQLI 369

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK- 792
           R AFI+    + I +D+S IE R+LA +A    +   FEN  DI+   A+ +FGV +EK 
Sbjct: 370 RTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENGEDIYCRTASRMFGVPVEKH 429

Query: 793 -VSPQMRRHAKTINFSIIY 810
            V+  +R+  K    +  Y
Sbjct: 430 GVNGHLRQKGKIATLACGY 448


>gi|262212097|gb|ACY35665.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212109|gb|ACY35671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212119|gb|ACY35676.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212129|gb|ACY35681.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255]
          Length = 652

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 164/425 (38%), Gaps = 94/425 (22%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI++D +L++       +    L +    ++G   N +SP QL   L  K+ F   + T
Sbjct: 205 TGIKVDTELIENAIECDKRYTEKLTKEAIKITGLN-NPNSPAQLKKWLSDKVSFEITSLT 263

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTF 702
           K    ++  + L+Q+   D+  +   LE R+L   + IK   A  L    + R + +  F
Sbjct: 264 K----ESIPEILKQV---DDENVVRTLELRKLMSKTSIKKYEAMKLAKGNDNRVRGLLQF 316

Query: 703 YSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIR 734
           Y   +  TGR A     +QN+P                            +   L Q IR
Sbjct: 317 Y--GANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDLIELLYDSVPDVLSQLIR 374

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE--K 792
            AFI     + I +D+S IE R++A +A       VF +   I+   A+++F V IE  K
Sbjct: 375 TAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGKIYEASASQMFKVPIESIK 434

Query: 793 VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY--- 845
              ++R+  K    S  YG S   L    A ++ +   E    +  + +  P I ++   
Sbjct: 435 KGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEELQPIVTAWRNANPNITKFWWD 494

Query: 846 ----------------IEKTKNFVRQNG--YVE------------------TIFGRRIHY 869
                           I+    F+   G  ++E                  T  G +I Y
Sbjct: 495 VDKAAKKAIKDRTIVEIQHGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKITY 554

Query: 870 DEINSPKSSIRNINERAA--INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           + +       + I+      +   +Q +A D  R AM +V  +         +++ +HDE
Sbjct: 555 EGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDA------GYSIVMHVHDE 608

Query: 928 LVFEV 932
           LV +V
Sbjct: 609 LVIDV 613


>gi|229472191|gb|ACQ72610.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472285|gb|ACQ72657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472519|gb|ACQ72774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472529|gb|ACQ72779.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472531|gb|ACQ72780.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472549|gb|ACQ72789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472609|gb|ACQ72819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|167841478|ref|ZP_02468162.1| 38L [Burkholderia thailandensis MSMB43]
          Length = 787

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 49/319 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK--IRRAFISPPTKK--LISADYSQIE 754
           VH   +  +T+TGRL+S  PNLQN+      GQK  ++  F S   +   +I +D+S +E
Sbjct: 433 VHHMLNHTNTVTGRLSSSNPNLQNL----SKGQKSRVKEVFESRWGEDGVIIQSDFSSLE 488

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--------SPQM---RRHAKT 803
           + + A + K   L +  ++  D+H +  A   G   E+V         P+    R  AK 
Sbjct: 489 VYVQAILTKAEKLIEDLKSGKDMHCVRLAAKEGKTYEEVFELCKIIADPEWDYKRTGAKV 548

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN------- 856
            +F   YG     +A    +P  E     +    R+  +  Y EK    ++ +       
Sbjct: 549 FSFQRAYGAGNKTIAESTGMPLEEVEALAQAEDERYHEVPAYFEKKTEEIKASREPAGIW 608

Query: 857 --------------GYVETIFGRRIHYDEINSP-----KSSIRNINERAAINAPIQGSAA 897
                         G+  T  G+   Y E  +P     +  +RN       N  +QG   
Sbjct: 609 LIHPANGADVQLGVGHSRTPGGKLYTYKETLAPDFLVKRGILRNFMPTEIKNYEVQGEGG 668

Query: 898 DITRRAM---ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC-L 953
           +I +  M   +    + E+ K+   ++ Q+HD    +  ++  T A+ ++   M +A   
Sbjct: 669 EIAKAGMWLTVRAFYTYENFKMLALLVNQVHDAEYADAHKKVATKAAALLHACMSEASNF 728

Query: 954 PKINLRVPLKVNIKVSNNW 972
               L+ P+ +++     W
Sbjct: 729 FSWFLQWPIPLHVPTDTVW 747


>gi|229472273|gb|ACQ72651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
 gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
          Length = 645

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 165/419 (39%), Gaps = 91/419 (21%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI +D +L++Q  A  +++   L   + +L+ E  N +S +Q+   L        G +T 
Sbjct: 207 GIGVDMELVRQAIAIDTRSRERLTAAMRELT-ELENPNSAQQMKQWLADH-----GLETD 260

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           T   K  A   E +     P+ + +L  RQ L+K       ++ N +   ++    F   
Sbjct: 261 TLGKKAVA---ELVKTAPEPL-REVLSLRQQLAKSSVKKYTAMENAVCADSRAHGMFQFY 316

Query: 706 ASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAF 737
            +  TGR +     LQN+P                            I   L Q IR A+
Sbjct: 317 GANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEALSVLYEDIPDTLSQLIRTAY 376

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSP 795
           +    +K I AD+S IE R++A  A      +VFE+  DI+   A+++F V +EK  V+ 
Sbjct: 377 VPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGGDIYCASASQMFHVPVEKHGVNG 436

Query: 796 QMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYI----E 847
            +R+  K    ++ YG S   L    A ++ +   E    +  +    P I ++      
Sbjct: 437 HLRQKGKIAELALGYGGSVGALKSMGALEMGLAEEELQPLVDAWRGSNPMITQFWWDVDR 496

Query: 848 KTKNFVRQNGYVET-----------IF-----GRRIHY-------DEINSPKSSIRNIN- 883
             K+ +RQ    ET           +F     GRR+ Y       ++      +   ++ 
Sbjct: 497 AVKDCIRQRIPTETHGLRFDYRSAMLFINLPSGRRLAYVKPRIGENQFGGESVTYMGVSG 556

Query: 884 ----ERAAINAP------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
               ER     P      +QG+A DI   AM ++            ++  +HDE++ E 
Sbjct: 557 TKKWERLESYGPKFVENIVQGTARDILCYAMQTLKN--------CSIVAHVHDEIIIEA 607


>gi|229472483|gb|ACQ72756.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLDLCCSQLAFIHDE 192


>gi|229472343|gb|ACQ72686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472583|gb|ACQ72806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|77118186|ref|YP_338108.1| DNA polymerase [Enterobacteria phage K1F]
 gi|72527930|gb|AAZ72982.1| DNA polymerase [Enterobacteria phage K1F]
 gi|84095014|emb|CAJ29370.2| gp5 protein [Enterobacteria phage K1F]
          Length = 723

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 118/320 (36%), Gaps = 61/320 (19%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAFISPPTKK--------LISA 748
           R+H   +    +TGR     PN+  +P      G+  R AF +   K          +  
Sbjct: 420 RMHGSINPCGAVTGRATHSSPNMAQVPANGAPYGETCRGAFGAAWNKTDGKPDPWIQVGV 479

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI--EKVSPQM--------- 797
           D S +ELR L + A        F+       +V  +I   N     ++P +         
Sbjct: 480 DASGLELRCLGNRA------APFDGGAYAKTVVEGDIHWANAVNAGLAPNVPRDKSNHDH 533

Query: 798 ---RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN-FV 853
              R +AKT  ++ +YG    ++   +   + E +  +K++    P I +  E   N  +
Sbjct: 534 DAFRNNAKTFIYAFLYGAGAAKIGLIVGGGKKEGSALMKKFIEGTPAIKDLREAVSNTLI 593

Query: 854 RQNGYVE-------------TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            ++ +V+              + GRRIH   I SP S         A+NA +QG  A + 
Sbjct: 594 SESKWVDGENIVKWKRRWLKGLDGRRIH---IRSPHS---------ALNALLQGDGAVVC 641

Query: 901 RRAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +  ++   + LE+             +  +HDEL      +EI   +  I     +    
Sbjct: 642 KHWIVETERMLEEAGYVHGWEGDFAYMAWVHDELQIACRTQEIAERTVEIAQLAMRKVGE 701

Query: 955 KINLRVPLKVNIKVSNNWQE 974
             N +  L    K+   W+E
Sbjct: 702 FYNFKCVLDTEGKIGPTWKE 721


>gi|229472261|gb|ACQ72645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472379|gb|ACQ72704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472605|gb|ACQ72817.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIKAYQLAFIHDE 192


>gi|14719815|pdb|1XO1|A Chain A, T5 5'-Exonuclease Mutant K83a
 gi|14719816|pdb|1XO1|B Chain B, T5 5'-Exonuclease Mutant K83a
          Length = 291

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 34/234 (14%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    +L +VDG++  +R          KH+    N+   F +     +Q+  K   A  
Sbjct: 16  MASRRNLMIVDGTNLGFRF---------KHN----NSKKPFASSYVSTIQSLAKSYSART 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPK-----------IPEMLLPQLP-LVRLATQAFGIP 108
             V+ D     FR E  P+Y  NR +           + E     L     L    F  P
Sbjct: 63  TIVLGDKGKSVFRLEHLPEYAGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTF--P 120

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
              I+G EADD+ A   YI +  G     V +ISTD D   L++     +      +  +
Sbjct: 121 TFTIRGVEADDMAA---YIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHL 177

Query: 166 EHVIKKWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             + +   +   E+ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+
Sbjct: 178 RDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDII 231


>gi|229472533|gb|ACQ72781.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSEA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|229472395|gb|ACQ72712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSDP----RFRELFLPSPGQVMVAADLSGIELRMLSH------FLARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N  
Sbjct: 110 RAAYIDAIDGLDKLLASIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFVHDE 192


>gi|47934780|gb|AAT39828.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGD-ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + ++   +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFW 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 CVPEGHKLIGCDASGLELRMLAH 190


>gi|229472365|gb|ACQ72697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   +I AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMIGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|229472243|gb|ACQ72636.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472435|gb|ACQ72732.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472469|gb|ACQ72749.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472473|gb|ACQ72751.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472481|gb|ACQ72755.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472489|gb|ACQ72759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472497|gb|ACQ72763.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472575|gb|ACQ72802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|47934768|gb|AAT39822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGD-ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + ++   +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFW 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 CVPEGHKLIGCDASGLELRMLAH 190


>gi|262212221|gb|ACY35727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +KV    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKVGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|47934614|gb|AAT39745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934636|gb|AAT39756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934640|gb|AAT39758.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934764|gb|AAT39820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934772|gb|AAT39824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934774|gb|AAT39825.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934778|gb|AAT39827.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934810|gb|AAT39843.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934832|gb|AAT39854.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGD-ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + ++   +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFW 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 CVPEGHKLIGCDASGLELRMLAH 190


>gi|229472279|gb|ACQ72654.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRGLFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          R  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSRAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|47934828|gb|AAT39852.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGD-ILFTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + ++   +KF    KT
Sbjct: 23  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLVGVGVKFKQ--KT 80

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 81  EKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 134

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 135 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 190


>gi|229472569|gb|ACQ72799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 34/218 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-- 775
           PNL  +P   +     RR F + P ++++ AD S +ELR LAH        +  E  L  
Sbjct: 1   PNLAQVPSDPEF----RRLFRASPGQRMVGADLSGVELRCLAHYLAGYDGGRYGEILLND 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAA 829
           DIH+        VN +K+    R+  KT+ ++ +YG    ++             +++  
Sbjct: 57  DIHQ--------VNADKIGIS-RKLVKTVTYAFLYGAGDQKIGLSYDKSLSPNKAKAKGK 107

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +  + Y     G+ + ++  K    + GYV  I  R++  D            +   A+N
Sbjct: 108 EIRQAYIDAIDGLDKLLKDIKQ-ASERGYVRAIDKRKVLVD------------SSHKALN 154

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +Q +AA + +R M+   +++++ KL    L  IHDE
Sbjct: 155 YLLQSTAAVLAKRWMVINDQTIKETKLCCSQLAFIHDE 192


>gi|229472411|gb|ACQ72720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472513|gb|ACQ72771.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472523|gb|ACQ72776.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  +HDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCSQLAFVHDE 192


>gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 655

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TG L +LE   +++P    L Q IR AFI     + I AD+S IE R++A +A  T   +
Sbjct: 357 TGNLDALELLYESVP--DTLSQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGETSTLE 414

Query: 770 VFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
            F    D++   A+ +FGV +EK  V+ ++R+  K    +  YG S
Sbjct: 415 AFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGS 460


>gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 643

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 117/259 (45%), Gaps = 49/259 (18%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENI---YDLSGEKFNLSSPKQLGDILFTK-LKFPSG 642
           GI ID+ L   V + I  + +  EEN+    +L+G + N +SP QL + L  K L+  S 
Sbjct: 204 GILIDEIL---VDSAIKFDEILREENMDRAIELTGLE-NPNSPLQLKEWLNKKGLEIDSL 259

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINK--RTQRV 699
           AK          +D+E         IK +LE RQ LSK      D++ N   K  R + +
Sbjct: 260 AK----------KDVESAIKNAEGDIKEVLELRQELSKSSVRKYDAMKNVKGKENRARGL 309

Query: 700 HTFYSLAST--MTGRLASLEP----NLQNIPIKTDL--------------------GQKI 733
             FY    T   +GRL  ++     NL+++ +   L                     Q I
Sbjct: 310 IQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYETMEFLYESPSDILSQLI 369

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK- 792
           R AFI     + I +D+S IE R+LA IA+   +   FEN  DI+   A+ +FGV +EK 
Sbjct: 370 RTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDAFENGEDIYCRTASRMFGVPVEKH 429

Query: 793 -VSPQMRRHAKTINFSIIY 810
            ++  +R+  K    +  Y
Sbjct: 430 GINGHLRQKGKIATLACGY 448


>gi|154334253|ref|XP_001563378.1| mitochondrial DNA polymerase I protein C [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1628

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 131/324 (40%), Gaps = 55/324 (16%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH       T TGRL+S  PNLQNIP + DL + I   F +     +I ADYSQ+E+ +
Sbjct: 1310 RVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGA--QGMMIEADYSQLEVVV 1367

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--------SP---QMRRHAKTINF 806
            LA + +   + Q   +++D H +  + +     E V         P   Q+R+ AK  +F
Sbjct: 1368 LAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKAKVKKDPQYIQLRQQAKVFSF 1427

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR- 865
               YG     ++T   +   E    I          H Y E +K +      VE    R 
Sbjct: 1428 QRQYGAGISTISTTTGLTEQEVDRLI------VAEEHHYKELSKYYSLVTRCVEAGADRL 1481

Query: 866  -RIHYDEINSPKSSIRNI---------------------NERAAI----NAPIQGSAADI 899
             R+   + +   ++IR +                      +R ++    N P+QG A +I
Sbjct: 1482 LRLRTLDTSCWNTNIRRVVMLTEPMYYFVVPTGSKFDFTRDRKSVPRLKNYPVQGLAGEI 1541

Query: 900  TRRAMISVHKSL-EDHKLATKMLL--QIHDELVFE----VPEEEITTASQIIVHSME--K 950
             +    ++ +   +      K  L   +HD +  +    V +E     ++I+ H+ E   
Sbjct: 1542 VQIMCGAIVREFYQKRNYGEKAFLVNTVHDCVWVDAHKSVADEVRADLARIMGHTQETIA 1601

Query: 951  ACLPKINLRVPLKVNIKVSNNWQE 974
               P + L VP KV I   ++  E
Sbjct: 1602 TLWPDMKLDVPFKVEIHSGSSLGE 1625


>gi|229472459|gb|ACQ72744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     R+ F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDAEF----RKLFKASPGQIMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE------AAD 830
              ++  +I   N +K+    RR  KT+ ++ +YG    +L        SE        +
Sbjct: 50  ADVLLHGDIHQENADKIGIS-RRQVKTVTYAFLYGAGDAKLGKSYDAQLSEQQAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +   K+   ++G++    GRR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 156 LLQGSAGVLAKRWLLINHNNTRE--LCCSQLAFIHDE 190


>gi|47934792|gb|AAT39834.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934822|gb|AAT39849.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGD-ILFTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + ++   +KF    KT
Sbjct: 23  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLVGVGVKFKQ--KT 80

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 81  EKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 134

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 135 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 190


>gi|229472215|gb|ACQ72622.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIKAYQLAFVHDE 192


>gi|322504483|emb|CAM37559.2| putative mitochondrial DNA polymerase I protein C [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1628

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 131/324 (40%), Gaps = 55/324 (16%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH       T TGRL+S  PNLQNIP + DL + I   F +     +I ADYSQ+E+ +
Sbjct: 1310 RVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGA--QGMMIEADYSQLEVVV 1367

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--------SP---QMRRHAKTINF 806
            LA + +   + Q   +++D H +  + +     E V         P   Q+R+ AK  +F
Sbjct: 1368 LAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKAKVKKDPQYIQLRQQAKVFSF 1427

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR- 865
               YG     ++T   +   E    I          H Y E +K +      VE    R 
Sbjct: 1428 QRQYGAGISTISTTTGLTEQEVDRLI------VAEEHHYKELSKYYSLVTRCVEAGADRL 1481

Query: 866  -RIHYDEINSPKSSIRNI---------------------NERAAI----NAPIQGSAADI 899
             R+   + +   ++IR +                      +R ++    N P+QG A +I
Sbjct: 1482 LRLRTLDTSCWNTNIRRVVMLTEPMYYFVVPTGSKFDFTRDRKSVPRLKNYPVQGLAGEI 1541

Query: 900  TRRAMISVHKSL-EDHKLATKMLL--QIHDELVFE----VPEEEITTASQIIVHSME--K 950
             +    ++ +   +      K  L   +HD +  +    V +E     ++I+ H+ E   
Sbjct: 1542 VQIMCGAIVREFYQKRNYGEKAFLVNTVHDCVWVDAHKSVADEVRADLARIMGHTQETIA 1601

Query: 951  ACLPKINLRVPLKVNIKVSNNWQE 974
               P + L VP KV I   ++  E
Sbjct: 1602 TLWPDMKLDVPFKVEIHSGSSLGE 1625


>gi|229472357|gb|ACQ72693.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|229472211|gb|ACQ72620.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 36/218 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP-LYQVFENSL 775
           PNL  +P   +     R+ F + P + ++ AD S IELR+LAH +A+     Y       
Sbjct: 1   PNLAQVPSDAEF----RKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYASILLHG 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL--RIPRSEAADYIK 833
           DIH+  A +I G++        RR  KT+ ++ +YG    +L      ++  S+A    K
Sbjct: 57  DIHQENADKI-GIS--------RRQVKTVTYAFLYGAGDAKLGKSYDAQLTESQAKKKGK 107

Query: 834 R----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
                Y    PG+ + +   K+   ++G++    GRR   D                A+N
Sbjct: 108 EIRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCSVD------------GAHKALN 154

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +QGSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 155 YLLQGSAGVLAKRWLLINHNNTRE--LCCSQLAFIHDE 190


>gi|47934830|gb|AAT39853.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGD-ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + ++   +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFW 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 CVPEGHKLIGCDASGLELRMLAH 190


>gi|256375220|ref|YP_003098880.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
 gi|255919523|gb|ACU35034.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
          Length = 555

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 130/319 (40%), Gaps = 45/319 (14%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P  + +L +++L+++   +  S  +       R    Y +   ++GR A+       I
Sbjct: 254 DHPAAEPLLAYKELARLWVAHGWSWLDAWVA-DGRFRPDYVVGGVVSGRWATRGGAALQI 312

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      + +R A  + P  +L++AD +Q+E R+LA +++   L +V     D++  +AA
Sbjct: 313 P------RSLRTAVRADPGWRLVAADAAQLEPRVLAALSRDRRLAEVAGED-DLYTTLAA 365

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           + F  +        R  AK    S +YG +              AA+ +     RFP   
Sbjct: 366 DSFHGD--------RGQAKIAMLSAMYGGT-----------SGGAAELLAVLRRRFPDAV 406

Query: 844 EYIEKTKNFVRQNGYVETIFGR------RIHYDEINSP-------KSSIRNINE--RAAI 888
            Y+E+      + G V +  GR      +  ++   S        + S R   E  R   
Sbjct: 407 GYVERAAREGERGGVVRSRLGRTSPAPSQAWHEATGSADDGEDALRRSQRAAREWGRFTR 466

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N  +Q SAAD T   + ++ + L +      ++   HDE++   P          +V + 
Sbjct: 467 NFVVQASAADWTAALLGALRRRLHERAPEAHLVFFQHDEVLVHCPAGLAEVVCAEVVAAG 526

Query: 949 EKAC---LPKINLRVPLKV 964
           E+A        ++R PLK 
Sbjct: 527 EEASRLVFEGTDVRFPLKA 545


>gi|229472269|gb|ACQ72649.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDIIKLNQIEAYQLAFIHDE 192


>gi|229472245|gb|ACQ72637.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 99/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR--LATQLRIPRSEAADYI 832
            DIH+  A +I G++        RR  KT+ ++ +YG    +  L+   ++    A D  
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATDKG 106

Query: 833 KR----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           K     Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|47934782|gb|AAT39829.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934784|gb|AAT39830.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934796|gb|AAT39836.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934804|gb|AAT39840.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934820|gb|AAT39848.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGD-ILFTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + ++   +KF    KT
Sbjct: 23  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLVGVGVKFKQ--KT 80

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 81  EKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 134

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 135 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 190


>gi|47934626|gb|AAT39751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 200

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGD-ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + ++   +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFW 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 CVPEGHKLIGCDASGLELRMLAH 190


>gi|229472577|gb|ACQ72803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDL--VFRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + ++ M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKQWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|229472231|gb|ACQ72630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGGYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|262342107|gb|ACY54564.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 34/216 (15%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLDI 777
           NL  +P   +     R+ F + P + ++ AD S IELR+LAH +A+       ++     
Sbjct: 3   NLAQVPSDAEF----RKLFKASPNQVMVGADLSGIELRMLAHYLAR-------YDEGRYA 51

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L          +  + +  + 
Sbjct: 52  DVLLHGDIHQENADKIGIS-RRAVKTVTYAFLYGAGDSKLGKSFDAQLTEQQAKKKGKEI 110

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY+    GRR   D                A+N  
Sbjct: 111 RQAYMDAVPGLEKLVNAVKSKA-ESGYINLCDGRRCSVD------------GSHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R M+  H +  +  L    L  IHDE
Sbjct: 158 LQGSAGVLAKRWMLINHDNTRE--LCCSQLAFIHDE 191


>gi|262212057|gb|ACY35645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212063|gb|ACY35648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212099|gb|ACY35666.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212105|gb|ACY35669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262342141|gb|ACY54581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   D     R+ F++ P + ++ AD S IELR+LAH          F+     
Sbjct: 1   PNLAQVPSDKDF----RQLFMATPGQIMVGADLSGIELRMLAH------YLSRFDGGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA----TQLRIPRSEAADYIK 833
             ++  +I   N +K+    RR  KT+ ++ +YG    +L      QL    ++      
Sbjct: 51  EILLHGDIHQENADKIGIS-RRQVKTVTYAFLYGAGDAKLGRSYDPQLTEKEAKKKGKEI 109

Query: 834 R--YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           R  Y    PG+   +   K+   + GY+    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLETLVTAVKSKA-ELGYINLCDGRRCAVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 157 LQGSAGVLAKRWLLINHNNTTE--LCCSQLAFIHDE 190


>gi|229472415|gb|ACQ72722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I    + SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIM---VGSPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|229472259|gb|ACQ72644.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472389|gb|ACQ72709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472463|gb|ACQ72746.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472553|gb|ACQ72791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472573|gb|ACQ72801.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472587|gb|ACQ72808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472597|gb|ACQ72813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
          Length = 653

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 63/286 (22%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL---------FTK 636
           TGI++D+ L+    A   ++  +      +L+G + N +SP QL D L          TK
Sbjct: 213 TGIRLDRVLVDHAVACDRQHRATTLARAQELTGLE-NPNSPIQLKDWLAAHGAPLQSLTK 271

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR-QLSKIKSTYADSLPNHINKR 695
            +  +   T TGQ                  ++ +L  R +L+K      +++  H+  R
Sbjct: 272 DEVAAALDTATGQ------------------VREVLLLRGELAKSSVKKYEAM-QHVTGR 312

Query: 696 TQRVHTFYSL-ASTMTGRLASLEPNLQNIP----------------------------IK 726
             R   F     +  TGR A     +QN+P                            + 
Sbjct: 313 DGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARSLVRTGDFEAVELLYDSVP 372

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
             L Q IR AFI     + + AD+S IE R++A +A  T   + F +  D++   A+ +F
Sbjct: 373 DTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGETTTLEAFRDGKDLYCETASRMF 432

Query: 787 GVNIEK--VSPQMRRHAKTINFSIIY--GISPFRLATQLRIPRSEA 828
           GV ++K   + ++R+  K    +  Y  G+   +    LR+  +E+
Sbjct: 433 GVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRMGLAES 478


>gi|325117552|emb|CBZ53104.1| putative DNA polymerase I [Neospora caninum Liverpool]
          Length = 542

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWK----LLQNSRKESIASHFA 62
           L ++DG+  ++R+ +  P +     G+PV AI GF   L      LLQ        SH  
Sbjct: 54  LAVIDGTCVVFRSHFGMPEV-LDGGGVPVQAIIGFFRSLAAIRRALLQ-------PSHLV 105

Query: 63  VIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           V+FD P +   R  I+  YK +R + P  L+ Q  ++    +   I  +   G EADD+I
Sbjct: 106 VVFDGPESRESRKAIFDGYKGHRSETPASLVNQFAIILRLCERMQITTLSEPGVEADDVI 165

Query: 122 AT 123
           AT
Sbjct: 166 AT 167


>gi|184200105|ref|YP_001854312.1| putative DNA polymerase [Kocuria rhizophila DC2201]
 gi|183580335|dbj|BAG28806.1| putative DNA polymerase [Kocuria rhizophila DC2201]
          Length = 588

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 125/323 (38%), Gaps = 47/323 (14%)

Query: 668 IKNILEWRQLSKI-KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +  +LE+++LS++  +T    L   +++   R H  Y +   +TGR A+       IP  
Sbjct: 287 VTPVLEYKKLSRVFSATGWHWLDTWVHE--GRFHPEYVVGGVVTGRWAARGGGALQIP-- 342

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
               + IR A  + P   L+ AD +Q+E R+LA +A+   L +      D++  +A +  
Sbjct: 343 ----KYIRDAVRADPGHALVVADAAQLEPRVLAILARDDALAEA-SRGRDLYTAIAEQGQ 397

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
               E      R HAK      +YG +                 ++ +    FP    Y+
Sbjct: 398 ARGSELTE---RSHAKLALLGAMYGAT-----------SGAGGRFMPQLTRMFPRAVGYV 443

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSP------KSSIRNINERAAINAP--------- 891
           E           V T  GR   +     P      +++     ER A  A          
Sbjct: 444 EHAARVGELGHQVCTYLGR---WSPAPGPEWFEVQRATDTQAGERRAAQASRSHGRFSRN 500

Query: 892 --IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
             +QGSAA+     +  + + L    +  +++  +HDE++    E+      QI+ H+  
Sbjct: 501 FVVQGSAAEWALAWLGHIRQGLHGADVDAELVFFLHDEVMVHCAEQHADRVQQIVEHAAG 560

Query: 950 KA---CLPKINLRVPLKVNIKVS 969
           +A       + + VP+   +  S
Sbjct: 561 QAVHTVFGTVPVEVPVATTVVTS 583


>gi|262212231|gb|ACY35732.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRCA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|47934826|gb|AAT39851.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGD-ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + ++   +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFW 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 CVPEGHKLIGCDASGLELRMLAH 190


>gi|262212095|gb|ACY35664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--ND--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472197|gb|ACQ72613.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472287|gb|ACQ72658.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472311|gb|ACQ72670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472417|gb|ACQ72723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFIPTPGQIMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|291438121|ref|ZP_06577511.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291341016|gb|EFE67972.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 563

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 135/327 (41%), Gaps = 67/327 (20%)

Query: 575 PMIDVVS----QMEITGIQIDQDLLKQ-VSAEISKNLLSLEEN--------------IYD 615
           P+ D+++    Q   TG     D ++  ++AE +  L++ E N              ++D
Sbjct: 118 PLADLLAVYAEQQRRTGATAHPDRMRLLIAAESAGMLVAAEMNRAGLPWRADVHRAVLHD 177

Query: 616 LSGEKF-NLSSPKQLGDIL------FTKLKFPS------GAKTKTGQWKTTAQDLEQINC 662
           L GE++     P++L ++       F +   P        A  + G  K ++    +I  
Sbjct: 178 LLGERYAGGGEPRRLAELADEVSAAFGRRVRPDLPADVVKAFAQAGV-KVSSTRRWEIES 236

Query: 663 GDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            D+P +K +LE+++L +I   +  S L + +  R  R    +    T++GR  S      
Sbjct: 237 VDHPAVKPLLEYKKLYRIWVAHGWSWLQDWV--RDGRFRPEFHAGGTVSGRWVSHGGGAL 294

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
            IP      + IRRA ++ P  +L+ AD  Q+E R+LA I++   L +V     D+++ V
Sbjct: 295 QIP------KVIRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSV 348

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF---HR 838
           +  +F  +        R  AK      +YG +              + D +K       R
Sbjct: 349 SDRVFSGD--------RDRAKLAVLGAVYGQT--------------SGDGLKNLAALRRR 386

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGR 865
           FP    Y+++      +   V T  GR
Sbjct: 387 FPRAVAYVDEAARAGEEGRLVRTWLGR 413


>gi|229472219|gb|ACQ72624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     RR F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDAEF----RRLFKASPGQIMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA------AD 830
              ++  +I   N +K+    RR  KT+ ++ +YG    +L        SE+       +
Sbjct: 50  ADVLLHGDIHQENADKIGIS-RRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +   K+   ++G++    GRR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            + GSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 156 LLHGSAGVLAKRWLLINHNNTRE--LCCSQLAFIHDE 190


>gi|262212089|gb|ACY35661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212167|gb|ACY35700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCPQLAFIHDE 192


>gi|239929792|ref|ZP_04686745.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 577

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 135/327 (41%), Gaps = 67/327 (20%)

Query: 575 PMIDVVS----QMEITGIQIDQDLLKQ-VSAEISKNLLSLEEN--------------IYD 615
           P+ D+++    Q   TG     D ++  ++AE +  L++ E N              ++D
Sbjct: 132 PLADLLAVYAEQQRRTGATAHPDRMRLLIAAESAGMLVAAEMNRAGLPWRADVHRAVLHD 191

Query: 616 LSGEKF-NLSSPKQLGDIL------FTKLKFPS------GAKTKTGQWKTTAQDLEQINC 662
           L GE++     P++L ++       F +   P        A  + G  K ++    +I  
Sbjct: 192 LLGERYAGGGEPRRLAELADEVSAAFGRRVRPDLPADVVKAFAQAGV-KVSSTRRWEIES 250

Query: 663 GDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            D+P +K +LE+++L +I   +  S L + +  R  R    +    T++GR  S      
Sbjct: 251 VDHPAVKPLLEYKKLYRIWVAHGWSWLQDWV--RDGRFRPEFHAGGTVSGRWVSHGGGAL 308

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
            IP      + IRRA ++ P  +L+ AD  Q+E R+LA I++   L +V     D+++ V
Sbjct: 309 QIP------KVIRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSV 362

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF---HR 838
           +  +F  +        R  AK      +YG +              + D +K       R
Sbjct: 363 SDRVFSGD--------RDRAKLAVLGAVYGQT--------------SGDGLKNLAALRRR 400

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGR 865
           FP    Y+++      +   V T  GR
Sbjct: 401 FPRAVAYVDEAARAGEEGRLVRTWLGR 427


>gi|325272840|ref|ZP_08139177.1| DNA polymerase [Pseudomonas sp. TJI-51]
 gi|324102045|gb|EGB99554.1| DNA polymerase [Pseudomonas sp. TJI-51]
          Length = 683

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 154/405 (38%), Gaps = 71/405 (17%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN SS   + D L     +     TK G+ +   + + ++N    P  K + E+  ++K
Sbjct: 298 EFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLN---YPPCKLLTEYLLVAK 354

Query: 680 IKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAF 737
             S  A+      + ++  R+H   +     TGR     PN+  +P   +  G   R  F
Sbjct: 355 RISQLAEGKQAWMLVEKQGRIHGSVNPNGAATGRATHAYPNVAQVPASGSPYGIDCRELF 414

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEK--- 792
             P    L+ AD S +ELR LAH        +  +  L  DIH     +  G+  EK   
Sbjct: 415 TVPHGWLLVGADASGLELRCLAHFMARYDGGKYVDILLNGDIH-WANVQAMGITSEKRDD 473

Query: 793 ---VSPQMRRHAKTINFSIIYGISPFRLAT----QLRIPRSEAADY-------------- 831
              +    R  AKT  ++ +YG    ++ T     +   ++   DY              
Sbjct: 474 HNTLHKLYRDGAKTFIYAFLYGAGDEKVGTIVYGMVAKAKALGLDYQHLLDVFFNGQDNP 533

Query: 832 -----------IKRYFHR-FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
                      +K  F R  P + + ++  K   ++ G++  + GR +H       KS+ 
Sbjct: 534 DEEALKAAGKKLKATFLRKTPALKKLVKAVKEAAKR-GHLVGLDGRHVHV------KSA- 585

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA------TKMLLQIHDELVFEVP 933
                 AA+N  +QG+ A   ++ ++ +   L+   L             +HDE+     
Sbjct: 586 -----HAALNYLLQGAGALACKQWLVFLDDELQARGLKHGWDGDYAFCAWVHDEVQIACR 640

Query: 934 EEEITTASQIIVHSMEKACLPK----INLRVPLKVNIKVSNNWQE 974
            E I      IV    +AC+ K     N R PL    K+  NW E
Sbjct: 641 NEAIAA----IVREAAEACVAKAGEAFNFRCPLAGESKMGLNWAE 681


>gi|47934766|gb|AAT39821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGD-ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + ++   +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVPAPYGKECRSFW 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 CVPEGHKLIGCDASGLELRMLAH 190


>gi|262342251|gb|ACY54636.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +D G   R  FI  P + ++ AD + IELR+L+H +A+       ++N   
Sbjct: 1   PNLAQVP--SDHG--FRELFIPTPGQVMVGADLAGIELRMLSHSLAR-------YDNGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----D 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N 
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472237|gb|ACQ72633.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472591|gb|ACQ72810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIKAYQLAFVHDE 192


>gi|229472341|gb|ACQ72685.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYTMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [butyrate-producing bacterium SM4/1]
          Length = 646

 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 11/130 (8%)

Query: 687 SLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           +LP NH++  T+      +      G   +LE   +++P    L Q IR AF+    +K 
Sbjct: 334 NLPQNHLDDLTE------ARGLVRAGGFDALEMLYEDVP--DTLSQLIRTAFVPQGNRKF 385

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKT 803
           I AD+S IE R++A +A       VF    DI+   A+++FGV +EK  V+  +R+  K 
Sbjct: 386 IVADFSAIEARVIAWLADEKWRQDVFAEGKDIYCASASQMFGVPVEKHGVNGHLRQKGKI 445

Query: 804 INFSIIYGIS 813
              ++ YG S
Sbjct: 446 AELALGYGGS 455


>gi|229472221|gb|ACQ72625.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472277|gb|ACQ72653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472293|gb|ACQ72661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472375|gb|ACQ72702.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472445|gb|ACQ72737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472465|gb|ACQ72747.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472501|gb|ACQ72765.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472515|gb|ACQ72772.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472547|gb|ACQ72788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472579|gb|ACQ72804.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|255600297|ref|XP_002537427.1| DNA polymerase I, putative [Ricinus communis]
 gi|223516387|gb|EEF24957.1| DNA polymerase I, putative [Ricinus communis]
          Length = 152

 Score = 59.3 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 13/157 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L  +DG + + R + A+P      K D    +A++ F     + L N  +    +H    
Sbjct: 4   LLAIDGLNIVRRVYEASPEPDSPDKADIALRHALSSF-----RTLVNDHE---PTHLLPA 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   T+R+++Y  Y+  R  +P  L   LP      +  G+  + +   EADD+I T 
Sbjct: 56  FDFGGRTWRHDLYAGYRKGRAPMPSPLREALPAFYDKLRGLGMHVVSLPEVEADDVIGTV 115

Query: 125 T--YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
              ++AE  G A TI +TDKDL  L++    ++D  K
Sbjct: 116 VLRWLAEGRGEA-TIATTDKDLHGLIAHGARVWDHFK 151


>gi|47934794|gb|AAT39835.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDILF-TKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 14  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLVGVGVKFKQ--KT 71

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 72  EKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 125

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 126 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 181


>gi|229472305|gb|ACQ72667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472551|gb|ACQ72790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212067|gb|ACY35650.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212073|gb|ACY35653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212087|gb|ACY35660.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212103|gb|ACY35668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212107|gb|ACY35670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212117|gb|ACY35675.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212149|gb|ACY35691.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212151|gb|ACY35692.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212163|gb|ACY35698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212185|gb|ACY35709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212199|gb|ACY35716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342209|gb|ACY54615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342219|gb|ACY54620.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342245|gb|ACY54633.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|157866599|ref|XP_001687691.1| mitochondrial DNA polymerase I protein C [Leishmania major strain
            Friedlin]
 gi|68125305|emb|CAJ03123.1| putative mitochondrial DNA polymerase I protein C [Leishmania major
            strain Friedlin]
          Length = 1548

 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH       T TGRL+S  PNLQNIP + DL + I   F +     +I ADYSQ+E+ +
Sbjct: 1230 RVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFSA--QGMMIEADYSQLEVVV 1287

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--------SP---QMRRHAKTINF 806
            LA + +   + Q   +++D H +  + +     E V         P   Q+R+ AK  +F
Sbjct: 1288 LAALCRDPRMMQELRDNIDFHCLRVSLMTKEPYEDVVRKAKVEKDPQYIQLRQQAKVFSF 1347

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
               YG     ++T   +   E    I    H +  + +Y
Sbjct: 1348 QRQYGAGVSTISTTTGLTEQEVDRLIVAEEHHYKELSKY 1386


>gi|229472249|gb|ACQ72639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.3 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|262212355|gb|ACY35794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     R+ F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDANF----RKLFTATPGQVMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE------AAD 830
              ++  +I   N +K+    RR  KT+ ++ +YG    +L        SE        +
Sbjct: 50  ASILLHGDIHQENADKIGIS-RRQVKTVIYAFLYGAGDSKLGRSYDPQLSEQQAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +   K+   ++GY+     RR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDSRRCTVD------------GSHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  I +R M+  + + ++  L    L  IHDE
Sbjct: 156 LLQGSAGVIAKRWMLINYTNTKE--LCCSQLAFIHDE 190


>gi|229472263|gb|ACQ72646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK--- 833
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++        S A    K   
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGEE 108

Query: 834 ---RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A   +R M+   ++++D  L    L  +HDE
Sbjct: 156 CLQGNSAIPAKRWMVINQQNIKDLNLCCSQLAFVHDE 192


>gi|47934622|gb|AAT39749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE   D +G++       FNL+S KQ+ + L   L +     T+ GQ       LE I 
Sbjct: 38  VEERWSDKTGKQLKDKVTIFNLASRKQIAERL-QGLGWTPTKHTEKGQPIVDEGTLEDI- 95

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P  + I E+  L K +    D+    ++++T RVH       T+TGR+A   PNL 
Sbjct: 96  --DIPQAQLIAEYLMLQK-RVGMIDAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLG 152

Query: 722 NIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            +P +    G++IR  +       L   D S IELR LAH
Sbjct: 153 QVPSVTKPYGEQIRSLWTVDDGNVLCGTDLSGIELRCLAH 192


>gi|47934616|gb|AAT39746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 211

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE   D +G++       FNL+S KQ+ + L   L +     T+ GQ       LE I 
Sbjct: 39  VEERWSDKTGKQLKDKVTIFNLASRKQIAERL-QGLGWTPTKHTEKGQPIVDEGTLEDI- 96

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P  + I E+  L K +    D+    ++++T RVH       T+TGR+A   PNL 
Sbjct: 97  --DIPQAQLIAEYLMLQK-RVGMIDAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLG 153

Query: 722 NIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            +P +    G++IR  +       L   D S IELR LAH
Sbjct: 154 QVPSVTKPYGEQIRSLWTVDDGNVLCGTDLSGIELRCLAH 193


>gi|262342303|gb|ACY54662.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDVIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  +HDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCSQLAFVHDE 192


>gi|262342119|gb|ACY54570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLDLCCSQLAFIHDE 192


>gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
 gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
          Length = 520

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 121/311 (38%), Gaps = 37/311 (11%)

Query: 664 DNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           D+P +  +L  R+L+K+ ST    + DS       R  R    Y     ++GR AS    
Sbjct: 232 DHPAVPLLLRHRELAKLYSTNGWQWMDSW-----VRGDRFRPIYVPGGVVSGRWASRGGG 286

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
              IP      + +R + ++ P    + AD  Q+E RILA ++    +     +  D++ 
Sbjct: 287 ALQIP------KTMRSSVVADPGHVFVVADAGQLEPRILAAMSGDRRMMAAAGDD-DLYA 339

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           +V AE FG +        R  AK     ++YG +             EA   +     RF
Sbjct: 340 LVGAEAFGGD--------RAKAKVAILGVLYGAT-----------AGEAKALLVLLRKRF 380

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P   EY+E+      +   V+++ GR       +       +   R   N  +Q +A++ 
Sbjct: 381 PVAVEYVEQAAKAGERGEVVKSLLGRACPPPSPDFYSHGDAHARGRFTRNFVVQATASEW 440

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL-PKINL 958
               +  + + L +      +  Q HDE+V      E  TA  +   +     L     +
Sbjct: 441 ALCLLADLRRRLAEDPDGELVFFQ-HDEVVVHTRNPESGTAHVLAAAASATRLLFGDTVV 499

Query: 959 RVPLKVNIKVS 969
           R P+ V ++ S
Sbjct: 500 RFPMDVGVRES 510


>gi|229472291|gb|ACQ72660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 36/218 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP-LYQVFENSL 775
           PNL  +P   +     R+ F + P + ++ AD S IELR+LAH +A+     Y       
Sbjct: 1   PNLAQVPSDAEF----RKLFKASPGQIMVGADLSGIELRMLAHYLARYDEGRYASILLHG 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA------A 829
           DIH+  A +I G++        RR  KT+ ++ +YG    +L        SE+       
Sbjct: 57  DIHQENADKI-GIS--------RRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGK 107

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +  + Y    PG+ + +   K+   ++G++    GRR   D                A+N
Sbjct: 108 EIRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALN 154

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 155 YLLQGSAGVLAKRWLLINHDNTRE--LCCSQLAFVHDE 190


>gi|148807524|gb|ABR13565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DVPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1473

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 25/272 (9%)

Query: 721  QNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
            QNIP   D    IRR F+S   +K   +  DYSQ+E+ +LA +     L       +D H
Sbjct: 1157 QNIP--KDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFH 1214

Query: 779  RMVAAEIFGVNIEKVSP----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
               A+   G+  +++            Q+RR AKT +F  +YG     L     IP  + 
Sbjct: 1215 IKRASFFSGLPYDEIYKGYKRGIPEYVQLRRTAKTFSFQRLYGAGVPLLHKTTGIPVEDL 1274

Query: 829  ADYIKRYFHRFPGIHEY--IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
               I++    +PGI ++  + +T     +N  + T F   +      S K+    +N   
Sbjct: 1275 EASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFVVELPTGIRMSFKTRDVVLNLPP 1334

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDHKLATK---MLLQIHDELV----FEVPEEEITT 939
              N PIQG  A++ +  +  V +         +   M+  +HD L      +V EE I  
Sbjct: 1335 VKNYPIQGFGAELAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDVLEECIRE 1394

Query: 940  ASQII--VHSMEKACLPKINLRVPLKVNIKVS 969
               I+  VH+      P + L+VPL +  +  
Sbjct: 1395 TRDILTEVHTYVAKAFPGVELKVPLNITTQCG 1426


>gi|228907509|ref|ZP_04071366.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           thuringiensis IBL 200]
 gi|228852001|gb|EEM96798.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           thuringiensis IBL 200]
          Length = 464

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 36/199 (18%)

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL------------KQVSAEISKN 605
           PK  +  +  ++  ++ P+I V++  E  GI+I ++ L            + V  EI   
Sbjct: 263 PKFNLGPIYKLFREIEMPLIAVLTTAERKGIKISEEFLSNDVKQILQTKFQSVKKEILNY 322

Query: 606 LLSL-----------EENIYD----LSGEKFNLSSPKQLGDILFTK-------LKFPSGA 643
           L S            ++N Y     L+   FN++SP  L   L+         +++    
Sbjct: 323 LGSTITLNNCMHPPKQQNKYKGANKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKSC 382

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-QRVHTF 702
           K+   + KT  + L + N   +P+I  ILE+R+L K+ S++ DSLP         ++H  
Sbjct: 383 KSVISKLKTDRKTLIR-NLSKHPVIPLILEYRRLVKLISSFCDSLPKEQQGTIDNKIHPI 441

Query: 703 YSLASTMTGRLASLEPNLQ 721
           Y+   T TGR++   PNL+
Sbjct: 442 YNSVGTKTGRMSCSSPNLK 460


>gi|229472407|gb|ACQ72718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFIPTPGQIMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|229472405|gb|ACQ72717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSH------FLARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|148807526|gb|ABR13566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DVPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1404

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 37/278 (13%)

Query: 721  QNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
            QNIP   D    IRR F+S   +K   +  DYSQ+E+ +LA +     L       +D H
Sbjct: 1088 QNIP--KDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFH 1145

Query: 779  RMVAAEIFGVNIEKVSP----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
               A+   G+  +++            Q+RR AKT +F  +YG     L     IP  + 
Sbjct: 1146 IKRASFFSGLPYDEIYKGYKRGIPEYVQLRRTAKTFSFQRLYGAGVPLLHKTTGIPVEDL 1205

Query: 829  ADYIKRYFHRFPGIHEY--IEKTKNFVRQNGYVETIF------GRRIHYDEINSPKSSIR 880
               I++    +PGI ++  + +T     +N  + T F      G RI +      K+   
Sbjct: 1206 EASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFVVELPTGIRISF------KTRDV 1259

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK---MLLQIHDELV----FEVP 933
             +N     N PIQG  A++ +  +  V +         +   M+  +HD L      +V 
Sbjct: 1260 VLNLPPVKNYPIQGFGAELAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDVL 1319

Query: 934  EEEITTASQII--VHSMEKACLPKINLRVPLKVNIKVS 969
            EE I     I+  VH+      P + L+VPL +  +  
Sbjct: 1320 EECIRETRDILTEVHTYVAKAFPGVELKVPLNITTQCG 1357


>gi|262212139|gb|ACY35686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212161|gb|ACY35697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSN----HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472337|gb|ACQ72683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        S+ A   K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY+    GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIRLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|229472257|gb|ACQ72643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAH------YLAHYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK---- 833
             ++  +I   N +K+    RR  KT+ ++ +YG    ++        SE     K    
Sbjct: 51  DVLLNGDIHQENADKIGIS-RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEI 109

Query: 834 --RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 157 LQGSAGCVAKLWMVHTHDVIKLNQIKAYQLAFIHDE 192


>gi|262212349|gb|ACY35791.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDELLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  +HDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCPQLAFVHDE 192


>gi|229472213|gb|ACQ72621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKVGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY+    GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIRLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|322489694|emb|CBZ24954.1| mitochondrial DNA polymerase I protein C,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1538

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH       T TGRL+S  PNLQNIP + DL + I   F +     +I ADYSQ+E+ +
Sbjct: 1220 RVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGA--QGMMIEADYSQLEVVV 1277

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--------SP---QMRRHAKTINF 806
            LA + +   + Q   +++D H +  + +     E V         P   Q+R+ AK  +F
Sbjct: 1278 LAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVMRKAKVEKDPQYIQLRQQAKVFSF 1337

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
               YG     ++T   +   E    I    H +  + +Y
Sbjct: 1338 QRQYGAGVSTISTTTGLTEQEVDRLIVAEEHHYKELSKY 1376


>gi|262212115|gb|ACY35674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSNS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKR-- 834
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA+   +  
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 835 ---YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|166012257|ref|ZP_02233155.1| exonuclease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|165988836|gb|EDR41137.1| exonuclease [Yersinia pestis biovar Antiqua str. E1979001]
          Length = 271

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 35/244 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N+LF VDG+S  Y    +  L    H+G + V A  GF       ++N R+ +   H   
Sbjct: 2   NYLF-VDGNSLGYYHQQSDKL----HNGEMEVQAAFGF-------VKNVRRYASILHARP 49

Query: 64  IFDYPAVT-FRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFE 116
           +  +   +  R + YP+YKANR   P+M         Q P +     A G+  +  +  E
Sbjct: 50  MILWDGFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAE 109

Query: 117 ADDIIATY-TYIAEKEGF-AVTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKK 171
           ADD+     + +A +     + +++ D D +QLV        L +  K ++++ E   + 
Sbjct: 110 ADDLAGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAEL 169

Query: 172 WGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG---------NLENILINA 221
            G+P P   +  +AL GD+ DNI G+ GIG   A  LL E+G         N  +I+IN 
Sbjct: 170 TGLPTPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINK 229

Query: 222 SRIK 225
            R K
Sbjct: 230 GRYK 233


>gi|229472557|gb|ACQ72793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A  I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADRI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIKAYQLAFVHDE 192


>gi|322489593|emb|CBZ24851.1| mitochondrial DNA polymerase I protein D,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1579

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 63/285 (22%)

Query: 671  ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS----------TMTGRLASLEPNL 720
            ILE R L K+  TY +S     +  T  V   +S+ S          T TGRLAS  PN 
Sbjct: 1212 ILELRALEKLIGTYYES----TDGGTGMVSLVHSMDSCIHHELIHNKTNTGRLASANPNC 1267

Query: 721  QNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
            QNIP K D    +R  FIS    K   I ADYSQ+E+  LA +A    + +   N++D H
Sbjct: 1268 QNIP-KED-KSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFH 1325

Query: 779  ----RMVAAEIFGVNI--------EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
                 M+  ++   ++        E    ++R+ AK  +F   YG     L+    + + 
Sbjct: 1326 CKRVTMMRPDLKYTDVLQRAKKNKEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGLTQD 1385

Query: 827  EAADYIKRYFHRFPGI-----------HEYIEKTKNFVRQ-------NGYVETIFGRRIH 868
            +    I++    + G+           + Y    +N VR         G    + G R  
Sbjct: 1386 QVRMLIEKENETYRGVEVFNKMVTLSANSYDASLQNGVRNVRGHQFFKGMFPVLTGSRYV 1445

Query: 869  YDEINSPKSSIRNINERAAI------------NAPIQGSAADITR 901
            + E + P+  +R   ER A+            N P+QG A +I +
Sbjct: 1446 FTESDVPEGMLR---ERDAVRKSTNFSPTHLKNYPVQGFAGEIVQ 1487


>gi|229472539|gb|ACQ72784.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKEKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26]
 gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55]
 gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34]
 gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79]
 gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291]
 gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58]
 gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291]
          Length = 652

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 165/425 (38%), Gaps = 94/425 (22%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI++D +L++       +    L +    ++G   N +SP QL   L  K+ F   + T
Sbjct: 205 TGIKVDTELIENAIECDKRYTEKLTKEAIKITGLN-NPNSPAQLKKWLSDKVGFEITSLT 263

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTF 702
           K    ++  + L+Q+   D+  +  ILE R+L   + IK   A  L    + R + +  F
Sbjct: 264 K----ESIPEILKQV---DDENVVRILELRKLMSKTSIKKYEAMKLAKGNDNRVRGLLQF 316

Query: 703 YSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIR 734
           Y   +  TGR A     +QN+P                            +   L Q IR
Sbjct: 317 Y--GANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDLIELLYDSVPDVLSQLIR 374

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE--K 792
            AFI     + I +D+S IE R++A  A       VF +   I+   A+ +F V IE  K
Sbjct: 375 TAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNSHGKIYEASASHMFKVPIESIK 434

Query: 793 VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIE- 847
               +R+  K    ++ YG S   L    A ++ +   E    +  + +  P I ++   
Sbjct: 435 KGDPLRQKGKISELALGYGGSIGALTSMGAIKMGLDEEELQPLVTTWRNANPNITKFWWD 494

Query: 848 ---------KTKNFVR-QNG----------YVETIFGRR------------------IHY 869
                    K +  V+ Q+G          ++E   GRR                  I Y
Sbjct: 495 VDKAAKKAIKDRTIVKLQHGIKFIYNPGVLFIELPSGRRLSYLRPKIEPHTTFSGDKITY 554

Query: 870 DEINSPKSSIRNINERAA--INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           + +       + I+      +   +Q +A D  R AM +V  +         +++ +HDE
Sbjct: 555 EGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDA------GYSIVMHVHDE 608

Query: 928 LVFEV 932
           LV +V
Sbjct: 609 LVIDV 613


>gi|262212133|gb|ACY35683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEV 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 646

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 35/179 (19%)

Query: 668 IKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +  IL  RQ L+K       ++ N +  + R + +  FY   +  TGR A     LQN+P
Sbjct: 279 MSEILALRQKLAKSSVRKYQAMQNSVCEDGRVRGMFQFY--GANRTGRFAGRLVQLQNLP 336

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       I   L Q IR AFI    +  I AD+S IE R
Sbjct: 337 QNHMEDLAEARGLVRSGDYDSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEAR 396

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           ++A  A  +    VF    DI+   A+++FGV +EK  V+  +R+  K    ++ YG S
Sbjct: 397 VIAWFAGESWRADVFAKGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGS 455


>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1417

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 25/272 (9%)

Query: 721  QNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
            QNIP   D    IRR F+S   +K   +  DYSQ+E+ +LA +     L       +D H
Sbjct: 1101 QNIP--KDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFH 1158

Query: 779  RMVAAEIFGVNIEKVSP----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
               A+   G+  +++            Q+RR AKT +F  +YG     L     IP  + 
Sbjct: 1159 IKRASFFSGLPYDEIYKGYKRGIPEYVQLRRTAKTFSFQRLYGAGVPLLHKTTGIPVEDL 1218

Query: 829  ADYIKRYFHRFPGIHEY--IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
               I++    +PGI ++  + +T     +N  + T F   +      S K+    +N   
Sbjct: 1219 EASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFVVELPTGIRMSFKTRDVVLNLPP 1278

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDHKLATK---MLLQIHDELV----FEVPEEEITT 939
              N PIQG  A++ +  +  V +         +   M+  +HD L      +V EE I  
Sbjct: 1279 VKNYPIQGFGAELAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDVLEECIRE 1338

Query: 940  ASQII--VHSMEKACLPKINLRVPLKVNIKVS 969
               I+  VH+      P + L+VPL +  +  
Sbjct: 1339 TRDILTEVHTYVAKAFPGVELKVPLNITTQCG 1370


>gi|262212155|gb|ACY35694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHR---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725]
 gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725]
          Length = 657

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 121/301 (40%), Gaps = 65/301 (21%)

Query: 632 ILFTKLKFPSGAKTKTGQW--KTTAQDLEQINCG----------DNPIIKNILEWRQ-LS 678
           I  T L  P+ A  + G+W  + T QD+E +  G          D   ++ +LE RQ L+
Sbjct: 232 IQVTGLDNPNSA-AQLGKWLKEKTGQDIENLQKGTVSELIGSLEDKEAVR-VLEIRQELA 289

Query: 679 K--IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP------------ 724
           K  IK   A       + R + +  FY   +  TGR A     +QN+P            
Sbjct: 290 KTSIKKYVAMEEAICPDGRIRGLLQFY--GANRTGRWAGRLVQVQNLPRNYLETLDYARE 347

Query: 725 ----------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
                           +   L Q IR AF+     K + AD+S IE R++A +A      
Sbjct: 348 IVKSQDADFLKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQ 407

Query: 769 QVFENSLDIHRMVAAEIFGVNIE---KVSPQ--MRRHAKTINFSIIYGISPFRL----AT 819
           +VF     I+   A+++FGV IE   K +P+  +R+  K    ++ YG S   L    A 
Sbjct: 408 EVFATHGKIYEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMGAL 467

Query: 820 QLRIPRSEAADYIKRYFHR-------FPGIHEYIEKTKNFVRQNGYVETIFGRRIH--YD 870
            + +   E  D ++R+ +        + GI   + K        G    IF R I   YD
Sbjct: 468 DMGLEEKELPDVVRRWRNANKRITDLWYGIENAVIKLMETGETQGLKGIIFSREIDLIYD 527

Query: 871 E 871
           +
Sbjct: 528 Q 528


>gi|229472541|gb|ACQ72785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G+         RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIG--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|148807548|gb|ABR13576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 655

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 103/441 (23%), Positives = 173/441 (39%), Gaps = 103/441 (23%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +M   G++ID DL++Q     +K    L E    ++G + N +S  QL D L ++    S
Sbjct: 205 RMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITGLE-NPNSVAQLRDWLTSRGIETS 263

Query: 642 G-AKTKTGQW--------------------KTTAQDLEQIN---CGDNPIIKNILEWRQL 677
           G AK +                        KT+ +  E ++   C D  I + +L++   
Sbjct: 264 GLAKKQVSDLLQTDLPGDVRRVLILRQMMSKTSVKKYEAMDRSICKDGHI-RGLLQFYGA 322

Query: 678 SKI-----KSTYADSLPNH----INKRTQRVHTF-YSLASTMTGRLASLEPNLQNIPIKT 727
           ++      +   A +LP H    +++  Q V T  Y L +T+ G LA L           
Sbjct: 323 NRTGRWAGRIVQAHNLPKHRIGDLDEARQLVKTGNYELITTLYGSLADL----------- 371

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            L Q  R AFI     + + +D+S IE R++A +A      +VFE    I+   A+++FG
Sbjct: 372 -LSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGKIYEASASQMFG 430

Query: 788 VNIE---KVSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFP 840
           V IE   K SP +R+  K    ++ YG +   L    A ++ +   E    +K +    P
Sbjct: 431 VPIEEITKASP-LRQKGKIAELALGYGGAKGALTQMGALEMGLSEDELPALVKAWRKANP 489

Query: 841 ---------------------------GIHEY-----------IEKTKNFVRQNGYVETI 862
                                      GI  Y             ++ ++VR    ++  
Sbjct: 490 NIVNLWYDLEKSAFEAVKWQKVVTAKSGIQFYGGSGLLRARLPSGRSLSYVRPQIGIDER 549

Query: 863 FGR-RIHYDEINSPKSSIRNINERAAINAP--IQGSAADITRRAMISVHKSLEDHKLATK 919
           FGR  I Y+ +         I+      A   +Q  A D    AM+ +  +        +
Sbjct: 550 FGREEITYEGVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAA------GYQ 603

Query: 920 MLLQIHDELVFEVPEEEITTA 940
           +   +HDE+V EVP E+   A
Sbjct: 604 IRFHVHDEVVIEVPNEQDAKA 624


>gi|77937070|gb|ABB05515.1| exodeoxyribonuclease IX [Xenorhabdus nematophila]
          Length = 101

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 1/99 (1%)

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V +++G+ P ++     L G S   IPGI GIG KTAA LLQ+ G+L+N+  +    +  
Sbjct: 3   VQQEFGVSPNQLPDYWGLAGISSSKIPGIQGIGPKTAATLLQQTGSLDNLFQHLEN-QPD 61

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           K R+ +  + E A +SR++  L+TD+ +   L+ L L +
Sbjct: 62  KWRKKLESHKEMAYISREVASLKTDLSLQGNLQQLRLTN 100


>gi|229472359|gb|ACQ72694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     R+ F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDAEF----RKLFKASPGQIMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE------AAD 830
              ++  +I   N +K+    RR  KT+ ++ +YG    +L        SE        +
Sbjct: 50  ADVLLHGDIHQENADKIGIS-RRQVKTVTYAFLYGAGDAKLGKSYDAQLSEQQAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y    PG+ + +   K+   ++G++    GRR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 156 LLQGSAGVLAKRWLLINHDNTRE--LCCSQLAFVHDE 190


>gi|32442295|gb|AAP82218.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 137/352 (38%), Gaps = 63/352 (17%)

Query: 543 IENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDL---LKQV 598
           ++   V + L  L   K+ +E  +H V+  + KP+  +V +++  G      L    ++ 
Sbjct: 93  LDQEAVFMLLAELKEKKMELEDEVHKVFGPIAKPVRRIVPKIKKDGCMSSVGLKYYGERW 152

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S EI      LE        ++FN+ S +Q+ + L +    P+    KT +         
Sbjct: 153 SDEICGEHTRLEW-------QEFNIGSRQQIAERLMSAGWKPTKFTPKTPK--------- 196

Query: 659 QINCGDNPIIKNILEWRQLSKIKS-----------------TYADSLPNHINKRTQRVHT 701
               G NPI+ +++    L+ +K                    A S  + +     RVH 
Sbjct: 197 --GGGGNPIVDDVV----LADVKGIPEATLMADYLTVVRRIAMAQSWLDAVED-DGRVHG 249

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDL-GQKIRRAFISPPTKKLISADYSQIELRILAH 760
             +    +TGR+    PNL  +   + + G ++R  +  P   KL+  D   +ELR+LAH
Sbjct: 250 EVNSNGAVTGRMTHYSPNLGQVTSGSKIYGPEMRSCWTVPQGHKLVGMDADGLELRMLAH 309

Query: 761 IAKITPLYQVFENSLDIHRMVA-------AEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
                     + N  +  RMVA        +    N        R  AKT  ++ +YG  
Sbjct: 310 ----------YMNDPEYTRMVAEGDKDAGTDAHTANQRAAGLNSRDDAKTFIYAFLYGAG 359

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
             ++ T +        +   R+    P +    E+  N  R+ G+++ + GR
Sbjct: 360 DAKIGTIVGKGAKAGRELKARFLDNTPALASLRERVSNSARR-GWLKGLDGR 410


>gi|322497680|emb|CBZ32756.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1548

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 124/319 (38%), Gaps = 61/319 (19%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH       T TGRL+S  PNLQNIP + DL + I   F +     +I ADYSQ+E+ +
Sbjct: 1230 RVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGA--QGMMIEADYSQLEVVV 1287

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--------SP---QMRRHAKTINF 806
            LA + +   + Q   +++D H +  + +     E V         P   Q+R+ AK  +F
Sbjct: 1288 LAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKAKVEKDPQYIQLRQQAKVFSF 1347

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
               YG     ++T   +   E    I          H Y E  K +      VE    R 
Sbjct: 1348 QRQYGAGVSTISTTTGLTEQEVDRLI------VAEEHHYKELCKYYSLVTRCVEAGADRL 1401

Query: 867  IHYDEINSPKSSIRNINERAAI------------------------------NAPIQGSA 896
            +    ++   +S+ N N R A+                              N P+QG A
Sbjct: 1402 LRLRTLD---TSLWNANIRRAVMLTEPIYYFVVPTGSKFDFTRDRKSVPRLKNYPVQGLA 1458

Query: 897  ADITRRAMISVHKSL-EDHKLATKMLL--QIHDELVFE----VPEEEITTASQIIVHSME 949
             +I +    ++ +          K  L   +HD +  +    V +E     ++I+ H+ E
Sbjct: 1459 GEIVQIMCGAIVREFYRKRNYGEKAFLVNTVHDCVWVDAHKCVADEVHADLARIMGHTQE 1518

Query: 950  --KACLPKINLRVPLKVNI 966
               A  P + L VP K  I
Sbjct: 1519 AIAALWPDMKLDVPFKAEI 1537


>gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 643

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 39/184 (21%)

Query: 664 DNPI-IKNILEWRQ-LSKIKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEPN 719
           D P+ ++ +LE RQ L K      +++ N I +  R + +  FY   ++ TGR +     
Sbjct: 259 DLPLKVRRVLEIRQQLGKTSVKKYEAMTNTIGEGDRVRGISQFY--GASKTGRFSGRLVQ 316

Query: 720 LQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADYS 751
           +QN+P                            I   L Q IR AFI     + + AD+S
Sbjct: 317 MQNLPRNYLEPLAETRECVKRQDYETLKLLFDSIPDTLSQLIRTAFIPSTGNQFVVADFS 376

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---PQ--MRRHAKTINF 806
            IE R++A +AK T + +VF     I+   A+++F V IEK++   P+  +R+  K    
Sbjct: 377 AIEARVIAWLAKETWVQEVFATHGKIYEATASQMFHVPIEKIAKGNPEYALRQKGKVATL 436

Query: 807 SIIY 810
           ++ Y
Sbjct: 437 ALGY 440


>gi|2392326|pdb|1EXN|A Chain A, T5 5'-Exonuclease
 gi|2392327|pdb|1EXN|B Chain B, T5 5'-Exonuclease
          Length = 290

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 97/229 (42%), Gaps = 34/229 (14%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           +L +VDG++  +R          KH+    N+   F +     +Q+  K   A    V+ 
Sbjct: 20  NLXIVDGTNLGFRF---------KHN----NSKKPFASSYVSTIQSLAKSYSARTTIVLG 66

Query: 66  DYPAVTFRNEIYPDYKANRPK-----------IPEMLLPQLP-LVRLATQAFGIPAIEIQ 113
           D     FR E  P+YK NR +           + E     L     L    F  P   I+
Sbjct: 67  DKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTF--PTFTIR 124

Query: 114 GFEADDIIATYTYIAEKEGF---AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK 170
           G EADD  A   YI +  G     V +ISTD D   L++     +      +  +    +
Sbjct: 125 GVEADDXAA---YIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHLRDXYE 181

Query: 171 KWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
              +   E+ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+
Sbjct: 182 HHNVDDVEQFISLKAIXGDLGDNIRGVEGIGAKRGYNIIREFGNVLDII 230


>gi|321399199|emb|CBZ08517.1| putative mitochondrial DNA polymerase I protein C [Leishmania
            infantum JPCM5]
          Length = 1548

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 124/319 (38%), Gaps = 61/319 (19%)

Query: 698  RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            RVH       T TGRL+S  PNLQNIP + DL + I   F +     +I ADYSQ+E+ +
Sbjct: 1230 RVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRFGA--QGMMIEADYSQLEVVV 1287

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--------SP---QMRRHAKTINF 806
            LA + +   + Q   +++D H +  + +     E V         P   Q+R+ AK  +F
Sbjct: 1288 LAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKAKVEKDPQYIQLRQQAKVFSF 1347

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
               YG     ++T   +   E    I          H Y E  K +      VE    R 
Sbjct: 1348 QRQYGAGVSTISTTTGLTEQEVDRLI------VAEEHHYKELCKYYSLVTRCVEAGADRL 1401

Query: 867  IHYDEINSPKSSIRNINERAAI------------------------------NAPIQGSA 896
            +    ++   +S+ N N R A+                              N P+QG A
Sbjct: 1402 LRLRTLD---TSLWNANIRRAVMLTEPIYYFVVPTGSKFDFTRDRKSVPRLKNYPVQGLA 1458

Query: 897  ADITRRAMISVHKSL-EDHKLATKMLL--QIHDELVFE----VPEEEITTASQIIVHSME 949
             +I +    ++ +          K  L   +HD +  +    V +E     ++I+ H+ E
Sbjct: 1459 GEIVQIMCGAIVREFYRKRNYGEKAFLVNTVHDCVWVDAHKCVADEVRADLARIMGHTQE 1518

Query: 950  --KACLPKINLRVPLKVNI 966
               A  P + L VP K  I
Sbjct: 1519 AIAALWPDMKLDVPFKAEI 1537


>gi|229472281|gb|ACQ72655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212143|gb|ACY35688.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212169|gb|ACY35701.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212175|gb|ACY35704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212179|gb|ACY35706.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212233|gb|ACY35733.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212337|gb|ACY35785.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342211|gb|ACY54616.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342215|gb|ACY54618.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342217|gb|ACY54619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342223|gb|ACY54622.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342231|gb|ACY54626.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342253|gb|ACY54637.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342255|gb|ACY54638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|148807562|gb|ABR13583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DVPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            S +TGR+    PNL  +P +    G++ R  +  P   KL+  D S +ELR+LAH
Sbjct: 125 NSAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLVGIDASGLELRMLAH 180


>gi|262342225|gb|ACY54623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCGQLAFVHDE 192


>gi|29566249|ref|NP_817817.1| gp56 [Mycobacterium phage Rosebush]
 gi|29424974|gb|AAN01898.1| gp56 [Mycobacterium phage Rosebush]
          Length = 609

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 32/238 (13%)

Query: 696 TQRVHTFYS-LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           T R H   + L ++ TGR++   P LQ  P       K  R  I    + L S D++QIE
Sbjct: 359 TGRCHPQVAILGASATGRMSYGSPELQQFP-------KDARPIIVDDGQGLTSVDWAQIE 411

Query: 755 LRILAHIAKITP-LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
              +A +A     L   FEN  D++  +     G++        R  AK I  + +YG  
Sbjct: 412 PVTMALMAGDREFLAPFFENDADLYEPI-MRACGID--------RPMAKVILLATMYGQG 462

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
              +A ++      AA   ++     P   +++ K ++    +G + T  GR +  D+  
Sbjct: 463 ARSMARRIGHTEESAAQIRRQMLAAMPASRDFMAKVESIAITHGRIVTGGGRILPVDQQG 522

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           S +          A+N   QGSA D+    ++     L++  L+  + L +HDELV +
Sbjct: 523 SYR----------AVNYICQGSAYDVLAHTIV----RLDEAGLSGHVQLAMHDELVVD 566


>gi|148807536|gb|ABR13571.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K L  + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVLPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKLIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|16082842|ref|NP_395396.1| putative exonuclease [Yersinia pestis CO92]
 gi|45478654|ref|NP_995510.1| hypothetical protein YP_pMT068 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108793586|ref|YP_636740.1| exonuclease [Yersinia pestis Antiqua]
 gi|108793786|ref|YP_636628.1| exonuclease [Yersinia pestis Nepal516]
 gi|145597250|ref|YP_001154717.1| exonuclease [Yersinia pestis Pestoides F]
 gi|149192739|ref|YP_001293970.1| putative exonuclease [Yersinia pestis CA88-4125]
 gi|165928498|ref|ZP_02224330.1| exonuclease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|166214635|ref|ZP_02240670.1| exonuclease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|229896998|ref|ZP_04512157.1| putative exonuclease [Yersinia pestis Pestoides A]
 gi|229897715|ref|ZP_04512870.1| putative exonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229900330|ref|ZP_04515464.1| putative exonuclease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904857|ref|ZP_04519967.1| putative exonuclease [Yersinia pestis Nepal516]
 gi|270491046|ref|ZP_06208119.1| 5'-3' exonuclease C-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|294502039|ref|YP_003565776.1| putative exonuclease [Yersinia pestis Z176003]
 gi|5834736|emb|CAB55233.1| putative exonuclease [Yersinia pestis CO92]
 gi|45357307|gb|AAS58701.1| hypothetical protein YP_pMT068 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108777850|gb|ABG20368.1| exonuclease [Yersinia pestis Nepal516]
 gi|108782133|gb|ABG16190.1| exonuclease [Yersinia pestis Antiqua]
 gi|145213018|gb|ABP42423.1| exonuclease [Yersinia pestis Pestoides F]
 gi|148872397|gb|ABR14886.1| putative exonuclease [Yersinia pestis CA88-4125]
 gi|165919488|gb|EDR36821.1| exonuclease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|166204177|gb|EDR48657.1| exonuclease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|229678172|gb|EEO74278.1| putative exonuclease [Yersinia pestis Nepal516]
 gi|229686583|gb|EEO78665.1| putative exonuclease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229693296|gb|EEO83346.1| putative exonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700034|gb|EEO88074.1| putative exonuclease [Yersinia pestis Pestoides A]
 gi|262364089|gb|ACY64425.1| putative exonuclease [Yersinia pestis D182038]
 gi|270335027|gb|EFA45805.1| 5'-3' exonuclease C-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|294352510|gb|ADE66566.1| putative exonuclease [Yersinia pestis Z176003]
 gi|320017584|gb|ADW01154.1| putative exonuclease [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 314

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 35/244 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N+LF VDG+S  Y    +  L    H+G + V A  GF       ++N R+ +   H   
Sbjct: 2   NYLF-VDGNSLGYYHQQSDKL----HNGEMEVQAAFGF-------VKNVRRYASILHARP 49

Query: 64  IFDYPAVT-FRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFE 116
           +  +   +  R + YP+YKANR   P+M         Q P +     A G+  +  +  E
Sbjct: 50  MILWDGFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAE 109

Query: 117 ADDIIATY-TYIAEKEGFA-VTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKK 171
           ADD+     + +A +     + +++ D D +QLV        L +  K ++++ E   + 
Sbjct: 110 ADDLAGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAEL 169

Query: 172 WGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG---------NLENILINA 221
            G+P P   +  +AL GD+ DNI G+ GIG   A  LL E+G         N  +I+IN 
Sbjct: 170 TGLPTPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINK 229

Query: 222 SRIK 225
            R K
Sbjct: 230 GRYK 233


>gi|255326718|ref|ZP_05367794.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
 gi|255295935|gb|EET75276.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
          Length = 668

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 134/329 (40%), Gaps = 54/329 (16%)

Query: 667 IIKNILEWRQLSKIKS----TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           +I  IL +++L +I +    T+AD+    +++   R H    +    TGR  +       
Sbjct: 361 MIDPILRYKKLYRIWTANGWTWADTW---VSEGAFRPH--LEVGGAATGRWGASGGGALQ 415

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           +P +      IR+A  +P  + L   D SQIE RILA +++   L      + D++  +A
Sbjct: 416 LPAE------IRQAVQAPEGQVLTVTDGSQIEPRILAALSRDEALASAGRGA-DLYAGIA 468

Query: 783 --AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
             A + GV + +     R HAK    +I+YG               E    +      FP
Sbjct: 469 ELARMKGVGLTE-----RSHAKVGMLAIMYGGR-----------SGEIGALLPHVAALFP 512

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRI-----HYDEI----NSPKSSIRNINE-----RA 886
              ++ E+        G V T  GR        + EI    +SP +  R ++      R 
Sbjct: 513 QAMDFTERAARIGEAGGQVTTFLGRTSPPVDERFREIVADRSSPAAESRAVSSARAHGRM 572

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHK-----LATKMLLQIHDELVFEVPEEEITTAS 941
             N  +QG+AA+     M +V   L   +     + T+++  +HDEL+   PE E     
Sbjct: 573 TRNFIVQGTAAEWALCWMGAVRSRLLSERIFGMPMRTRIVYFLHDELLLCGPELEADRVE 632

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           +I+     +A       RVP+   + V+ 
Sbjct: 633 RIVREGAAEAARLLFG-RVPVDFPVSVAR 660


>gi|229472235|gb|ACQ72632.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472491|gb|ACQ72760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|262212333|gb|ACY35783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFILTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 662

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 32/166 (19%)

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP------------- 724
           S +K   A  +    + R + +  FY   +  TGR A     LQN+P             
Sbjct: 308 SSVKKYQAMEMTACEDSRARGMFQFY--GANRTGRFAGRHIQLQNLPQNHLPDLAEAREL 365

Query: 725 ---------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
                          I   L Q IR AF+     K + +D+S IE R+L+ +A  T    
Sbjct: 366 VRQGNYEALELLYDSIPDVLSQLIRTAFVPRKGMKFVVSDFSAIEARVLSWLAGETWRLD 425

Query: 770 VFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           VF  + DI+   A+ +FGV +EK  V+  +R+  K    ++ YG S
Sbjct: 426 VFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGS 471


>gi|47934834|gb|AAT39855.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGD-ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + ++   +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFW 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 GVPEGHKLIGCDASGLELRMLAH 190


>gi|32442283|gb|AAP82212.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 102/237 (43%), Gaps = 27/237 (11%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTG-QWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           E+FNL+S  Q+   L  +L +    KTK G  +K   ++L  I       +K + +W+ L
Sbjct: 161 EEFNLASQPQINKRL-NRLGWKPTVKTKGGDSYKICPENLATIPDTAPQAVKGLKKWKVL 219

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP----------IKT 727
                  ++ L    ++   RVH        +T R A   PN+ NIP           K 
Sbjct: 220 ETRWKLASEWLQG--SQVDGRVHGQVITPGAVTHRAAHRGPNMANIPSVPHGKDGILWKM 277

Query: 728 D--LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY--QVFENSLDIHRMVAA 783
           D     + R+AF  P  K L+  D + I+LR+LAH     P+Y  QV +   DIH     
Sbjct: 278 DGMYAAECRQAFTVPEGKLLVGTDAAGIQLRVLAHYMN-DPVYTEQVIDG--DIH----- 329

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
             F +N      + R  AKT  ++ + G    ++A  L    ++A   ++ ++   P
Sbjct: 330 -TFNMNALGKFCKDRPTAKTFIYAFLLGAGVGKIAEILGCNAAQANKSMQNFYEALP 385


>gi|47934642|gb|AAT39759.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNL+S KQ+ + L   L +     T+ GQ       LE I   D P  + I E+  L K 
Sbjct: 57  FNLASRKQIAERL-QGLGWTPTKHTEKGQPIVDEGTLEDI---DIPQAQLIAEYLMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    D+    ++++T RVH       T+TGR+A   PNL  +P +    G++IR  +  
Sbjct: 112 RVGMIDAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKPYGEQIRSLWTV 171

Query: 740 PPTKKLISADYSQIELRILAH 760
                L   D S IELR LAH
Sbjct: 172 DDGNVLCGTDLSGIELRCLAH 192


>gi|47934770|gb|AAT39823.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGD-ILFTKLKFPSGAKT 645
           ++Q++ ++ K L  + EE   + +G++       FN+ S KQ+ + ++   +KF    KT
Sbjct: 23  MRQITEQLQKVLPPIVEERWSEKTGKRLKNKVTEFNVGSRKQIAERLVGVGVKFKQ--KT 80

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + L  I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 81  EKGAVIVNEKVLGGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 134

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 135 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 190


>gi|262212235|gb|ACY35734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ +  +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYEFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472391|gb|ACQ72710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 36/218 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           N  +QGSA  + ++ M+  H  ++ +++    L  +HD
Sbjct: 154 NYLLQGSAGCVAKQWMVHTHDVIKLNQIEAYQLAFVHD 191


>gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 655

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 46/226 (20%)

Query: 622 NLSSPKQLGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR---QL 677
           NL+SP QL   L T+  +  S AK +      TA            ++K +LE R     
Sbjct: 247 NLNSPIQLKQWLVTRGCELESLAKAEVDAALDTA----------TGVVKEVLELRGDLAK 296

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP------------- 724
           S +K   A       + R + +  FY   +  TGR A     +QN+P             
Sbjct: 297 SSVKKYQAMHNVAGADGRARGLIQFYG--AGRTGRFAGRLVQVQNLPRNYLPDLDQARSL 354

Query: 725 ---------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
                          +   L Q IR AFI  P  + I AD+S IE R++A +A  T    
Sbjct: 355 VQTGNLDALELLYESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTLA 414

Query: 770 VFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
            F    D++   A+ +F V +EK  ++ ++R+  K    +  YG S
Sbjct: 415 AFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGS 460


>gi|229472477|gb|ACQ72753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP--LYQVFENS 774
           PNL  +P   +     R+ F + P ++++ AD S +ELR LAH +A+       +V  N 
Sbjct: 1   PNLAQVPSDPEF----RKLFRASPGQRMVGADLSGVELRCLAHYLARYDEGRYREVLLND 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEA 828
            DIH+ V A+  G++        R+  KT+ ++ +YG    ++             +++ 
Sbjct: 57  -DIHQ-VNADKIGIS--------RKLVKTVTYAFLYGAGDQKIGLSYDKSLSPNKAKAKG 106

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +  + Y     G+ + ++  K    + GYV  I  R++  D            +   A+
Sbjct: 107 KEIRQAYIDAIDGLDKLLKDIKQ-ASERGYVRAIDKRKVLVD------------SSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q +AA + +R M+   +++++ KL    L  IHDE
Sbjct: 154 NYLLQSTAAVLAKRWMVINDQTIKETKLCCSQLAFIHDE 192


>gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 649

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 178/447 (39%), Gaps = 114/447 (25%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIY---DLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           GI +D D ++Q    IS +     ENI    +L+G + N +SP QL D L  +     G 
Sbjct: 208 GINLDMDFVRQA---ISCDEKFKAENIKKAKELTGLE-NPNSPAQLKDWLLKQ-----GM 258

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVH 700
           KT +   K    +L Q + G+   I   L  RQ L+K       S+ N +  + R + + 
Sbjct: 259 KTDSLS-KAVVSELLQDSDGE---IHEALSIRQQLAKSSVKKYTSMENVVCSDSRARGLI 314

Query: 701 TFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQK 732
            FY   +  TGR +     +QN+P                            I + L + 
Sbjct: 315 QFY--GANRTGRYSGRLIQVQNLPQNHLPDLKQARSLVKSGNFTALDLLYDSIPSVLSEL 372

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AFI     + I AD+S IE R++A +A       VF    DI+   A+++F V ++K
Sbjct: 373 IRTAFIPRYGSRFIVADFSAIEARVIAWLAGERWRIDVFAGGGDIYCASASQMFNVPVKK 432

Query: 793 --VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIH--- 843
             ++  +R+  K    ++ YG S   L    A Q+ +   E    +  + +  P I    
Sbjct: 433 NGINGHLRQKGKIAELALGYGGSVGALKAMGAIQMGLVEDELKPIVDAWRNSNPNITSLW 492

Query: 844 -------EYIEKTK--------NFVRQNG--YVETIFGRRIHY-------DEINSPKSSI 879
                  + + KTK            Q+G  +++   GRR+ Y       +       + 
Sbjct: 493 WRIDRAVKTVVKTKQPIEIYGIGIFYQSGILFIKLPSGRRLAYVKPLIGENRFGGESVTY 552

Query: 880 RNIN-----ERAAINAP------IQGSAADITRRAMISVHKSLEDHKLAT---KMLLQIH 925
             +      ER     P      +Q  + DI   AM+         KLAT   ++++ +H
Sbjct: 553 EGVGGTKKWERIESYGPKFVENIVQAISRDILAEAML---------KLATHEFQIVMHVH 603

Query: 926 DELVFEVPEEEITTASQIIVHSMEKAC 952
           DE+V E P +         V S+E+ C
Sbjct: 604 DEVVIEAPNK---------VSSVEEIC 621


>gi|229472267|gb|ACQ72648.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G++E I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKPLAAIKK-ASERGFIEAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   +++++  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKELNLCCSQLAFIHDE 192


>gi|229472429|gb|ACQ72729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ------LRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGCSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I    + SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIM---VGSPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKELNLCCSQLAFVHDE 192


>gi|262342257|gb|ACY54639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHR---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016]
 gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 644

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 115/263 (43%), Gaps = 51/263 (19%)

Query: 587 GIQIDQDLLKQ---VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           GI ID   +KQ   +  +  + L++L ++I +L     N +S +Q+ + L       +G 
Sbjct: 206 GIAIDMAFVKQAVKMDEQSREKLMALMQDITNLE----NPNSIQQMKEWLAD-----NGL 256

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVH 700
           +T +   K  A   E +     P+   +LE RQ L+K       ++ N +  + R + + 
Sbjct: 257 ETDSLGKKAVA---EMLKTAPEPL-GTVLELRQQLAKSSIKKYTAMENAVCNDGRARGMF 312

Query: 701 TFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQK 732
            FY   +  TGR +     LQN+P                            I   L + 
Sbjct: 313 QFY--GANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFDALTLIYDSIPEVLSEL 370

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AF+     K I AD+S IE R++A +A       VF+N  DI+   A+++F V +EK
Sbjct: 371 IRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGGDIYCASASQMFNVPVEK 430

Query: 793 --VSPQMRRHAKTINFSIIYGIS 813
             V+  +R+  K    ++ YG S
Sbjct: 431 NGVNGHLRQKGKIAELALGYGGS 453


>gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
 gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
          Length = 640

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 120/322 (37%), Gaps = 79/322 (24%)

Query: 697 QRVHTFYSL-ASTMTGRLASLEPNLQNIP----------------------------IKT 727
           QR H       +  TGR A     +QN+P                            +  
Sbjct: 298 QRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEMLYSSVPD 357

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            L Q IR AFI     + I ADYS IE R+LA +A        F+N  D++   A+ +FG
Sbjct: 358 TLSQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATASAMFG 417

Query: 788 VNIEK--VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPG 841
           V +EK  V+ ++R+  K    +  Y  S   L    A ++ +   E    +  +    P 
Sbjct: 418 VPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLSEDELQPIVDAWRQANPN 477

Query: 842 IHEYIEKTKN------------------FVRQNG--YVETIFGRRIHYDE----INS-PK 876
           I +   K  N                  F +++G  ++    GRR+ Y +    +N    
Sbjct: 478 IVQLWHKVDNAATRAISTGRPLTLRNLGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGG 537

Query: 877 SSIRNINERAA-------------INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           +SI    +  A             +   +Q +A D+   A+  +  +        ++++ 
Sbjct: 538 TSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENA------GHQIVMH 591

Query: 924 IHDELVFEVPEEEITTASQIIV 945
           IHDE+V + P    TT + I  
Sbjct: 592 IHDEVVIDEPINSGTTVADICA 613


>gi|31795439|ref|NP_857892.1| hypothetical protein Y1111 [Yersinia pestis KIM]
 gi|40787970|ref|NP_857684.2| DNA polymerase I [Yersinia pestis KIM]
 gi|52788113|ref|YP_093941.1| hypothetical protein pG8786_061 [Yersinia pestis]
 gi|3883109|gb|AAC82769.1| unknown [Yersinia pestis KIM 10]
 gi|52538042|emb|CAG27467.1| hypothetical protein [Yersinia pestis]
          Length = 331

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 35/244 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N+LF VDG+S  Y    +  L    H+G + V A  GF       ++N R+ +   H   
Sbjct: 19  NYLF-VDGNSLGYYHQQSDKL----HNGEMEVQAAFGF-------VKNVRRYASILHARP 66

Query: 64  IFDYPAVT-FRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFE 116
           +  +   +  R + YP+YKANR   P+M         Q P +     A G+  +  +  E
Sbjct: 67  MILWDGFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAE 126

Query: 117 ADDIIATY-TYIAEKEGFA-VTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKK 171
           ADD+     + +A +     + +++ D D +QLV        L +  K ++++ E   + 
Sbjct: 127 ADDLAGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAEL 186

Query: 172 WGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG---------NLENILINA 221
            G+P P   +  +AL GD+ DNI G+ GIG   A  LL E+G         N  +I+IN 
Sbjct: 187 TGLPTPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINK 246

Query: 222 SRIK 225
            R K
Sbjct: 247 GRYK 250


>gi|302553133|ref|ZP_07305475.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302470751|gb|EFL33844.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 560

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 159/397 (40%), Gaps = 95/397 (23%)

Query: 598 VSAEISKNLLSLEENIY-----DLSGEKF-NLSSPKQLGDIL------FTKLKFP----- 640
           V+AE++++ L     ++     DL GE++     P++L ++       F +   P     
Sbjct: 166 VAAEMNRSGLPWRAEVHRAVLHDLLGERYAGGGEPRRLAELADEVSTAFGRRVRPDLPAD 225

Query: 641 -------SGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNH 691
                  +G K + T +W        +I   D+P +K +LE+++L +I   +  S L + 
Sbjct: 226 VVKAFAQAGIKVSSTRKW--------EIESVDHPAVKPLLEYKKLYRIWVAHGWSWLQDW 277

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           +  R  R    +    T+TGR  +       IP      + IRRA ++ P  +L+ AD  
Sbjct: 278 V--REGRFRPEFLAGGTVTGRWVTNGGGGLQIP------KVIRRAVVADPGWRLVVADAD 329

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           Q+E R+LA I++   L +V     D+++ V+   F  +        R  AK      +YG
Sbjct: 330 QMEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAFSGD--------RAQAKLAVLGAVYG 381

Query: 812 ISPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFGRRI- 867
            +              + D +K       RFP    Y+++      +   V T  GR   
Sbjct: 382 QT--------------SGDGLKNLAALRRRFPRAVAYVDEAARAGEEGRLVRTWLGRTCP 427

Query: 868 --------HYDEINSPKS-------------SIRNINERA----AINAPIQGSAADITRR 902
                     +E   P S                + N RA    A N  +QGSAAD    
Sbjct: 428 PAARATDEAAEEAGIPLSEDDTQRDAQQWVPGYASTNARARGRFARNFVVQGSAADWALL 487

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
            + ++ K+  +  L+ +++   HDE++   PEEE   
Sbjct: 488 LLAALRKTCAE--LSAELVFFQHDEVIVHCPEEETAA 522


>gi|302808415|ref|XP_002985902.1| hypothetical protein SELMODRAFT_424811 [Selaginella moellendorffii]
 gi|300146409|gb|EFJ13079.1| hypothetical protein SELMODRAFT_424811 [Selaginella moellendorffii]
          Length = 443

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 8/148 (5%)

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADD++ T              + TD+ L  ++ P   +  +   + I + +     G+ 
Sbjct: 168 EADDVVTTLARQVTDRS-----LKTDRSLKAVLHPRIKISSSSFRKTITLNNTNASLGLN 222

Query: 176 PEKM-VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKKRREN 232
            + + +  + L GD+ D  PG+PG G KTA  L++++G+LENIL  A+   + +  R++ 
Sbjct: 223 WDFVYIQFRCLLGDAADGGPGVPGFGRKTALKLMRKHGSLENILSAAAIRAVGKPYRQDA 282

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLE 260
           + E++     + +++ LR D+ + +P+E
Sbjct: 283 LKEHSVLLEKNMEVLSLRRDINVELPVE 310


>gi|297559551|ref|YP_003678525.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843999|gb|ADH66019.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 554

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 128/351 (36%), Gaps = 53/351 (15%)

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S +    L  L   I +  G + N  SP Q+       + +       T  W      LE
Sbjct: 204 SGQRPPVLADLAARIGEAVGREVNPDSPAQV----LRAMAWIGHPVDSTRSWV-----LE 254

Query: 659 QINCGDNPIIKNILEWRQLSKIKST--------YADSLPNHINKRTQRVHTFYSLASTMT 710
           +I   D+P++  +L +++LS++ S         +    P        R H  Y +   ++
Sbjct: 255 RI---DHPVVPLLLRYKELSRLHSANGWAWLDAWVRRRPGPDGTTLGRFHPDYVVGGVVS 311

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR A+       IP      + +R A  + P   L+ AD  Q+E R+LA ++    L   
Sbjct: 312 GRWATRGGGALQIP------RSLRGAVRADPGWVLVRADAGQLEPRVLAAVSGDDALAAA 365

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                   R+ A  + G          R  AK    S +YG +             +AA 
Sbjct: 366 AAEEDLYARL-AVHVGG---------DRDRAKIGMLSAMYGQT-----------SGDAAP 404

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE-----INSPKSSIRN-INE 884
            +      +P   EY++         G V +  GR     E     ++ P    R     
Sbjct: 405 LLATMRRLYPRALEYVDSAARTGEGGGIVRSWLGRTSPVPEGWDAAVSGPGGERRRRAQG 464

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           R   N  +Q +AA+     + S+ + L D      ++  +HDE+V  VP +
Sbjct: 465 RFTRNFVVQATAAEWALVLLASLRQRLPDMPEGAGIVFFVHDEVVLHVPAD 515


>gi|262212225|gb|ACY35729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIP-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|18466675|ref|NP_569482.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16505991|emb|CAD09877.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 314

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 35/244 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N+LF VDG+S  Y    +  L    H+G + V A  GF       ++N R+ +   H   
Sbjct: 2   NYLF-VDGNSLGYYHQQSDKL----HNGEMEVQAAFGF-------VKNVRRYASILHARP 49

Query: 64  IFDYPAVT-FRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFE 116
           +  +   +  R + YP+YKANR   P+M         Q P +     A G+  +  +  E
Sbjct: 50  MILWDGFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAE 109

Query: 117 ADDIIATY-TYIAEKEGF-AVTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKK 171
           ADD+     + +A +     + +++ D D +QLV        L +  K ++++ E   + 
Sbjct: 110 ADDMAGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAEL 169

Query: 172 WGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG---------NLENILINA 221
            G+P P   +  +AL GD+ DNI G+ GIG   A  LL E+G         N  +I+IN 
Sbjct: 170 TGLPTPRAFLEAKALQGDNSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINK 229

Query: 222 SRIK 225
            R K
Sbjct: 230 GRYK 233


>gi|262342111|gb|ACY54566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  FI  P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDG----RFRELFIPSPGQLMVGADLSGIELRMLAHYLAR-------YDGGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE------AAD 830
              ++  +I  VN +K+    RR  KT+ ++ +YG    ++ T      SE        +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RREVKTVTYAFLYGAGDAKIGTSFDSSLSETKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               +     G+ E +   K      G+V +I  R+I  D   SP           A+N 
Sbjct: 109 IRSAFISAIDGLDELLSAIKE-ASTRGFVRSIDQRKILVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q  A  + ++ M+  + ++ +  +    L  IHDE
Sbjct: 156 LLQSGAGVVAKKWMLINNDTINNVGICCSQLAFIHDE 192


>gi|262212205|gb|ACY35719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 30/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK---- 833
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++       RS  A   K    
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSCDKLRSSQAAKKKGKEI 109

Query: 834 --RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           +QG++A + +R M+    +L+   L    L  IHD
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHD 191


>gi|148807495|gb|ABR13552.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKTIDEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  IP +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQIPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|308178280|ref|YP_003917686.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745743|emb|CBT76715.1| putative DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 549

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 145/341 (42%), Gaps = 53/341 (15%)

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A +LEQ+N   +P+I  +LE+++LS++ ST+ D+  +   K   R H  Y L +  +GR 
Sbjct: 240 AWELEQLN---HPLIAEVLEYKKLSRLASTHGDAWLDQWVKNG-RFHPHYVLGTVTSGRW 295

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           A+       +P        IR+   +      + AD  Q+E RILA I+    L +  + 
Sbjct: 296 AASGGGALQLP------HSIRQVVRTREGSTFVVADGRQLEPRILAAISNDQQLQKAGQQ 349

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY-GISPFRLATQLRIPRSEAADYI 832
             D+++ +      ++ + V+   R  AK    S+IY G      A    + RS      
Sbjct: 350 D-DLYQWL------LDAKLVA--SRNDAKLGMLSVIYGGGGGASGAVGAALTRS------ 394

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI-HYDE--INSPKSSIRNINERAAI- 888
                 FP    ++E+     +Q G V +  GR     DE  +   K++    ++RAA  
Sbjct: 395 ------FPTAMRFVEQAAATGQQGGGVRSFLGRGCPPADEQWLAGQKATSDEASQRAADS 448

Query: 889 ----------NAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936
                     N  +Q +AA+     M      +     +   K +  +HDE+VFE P   
Sbjct: 449 AARARGRFTRNFVVQATAAEWALVWMGHARHLIHQAGWSRICKQVFFVHDEIVFECPTGL 508

Query: 937 ITTASQIIVHS---MEKACLPKINLRVPLKVNIKVSNNWQE 974
                ++I H+     +    + + R P  V++ +S+N+ E
Sbjct: 509 APQLQEVIRHAAMLAGRTLFGQASPRFP--VSVAISDNYAE 547


>gi|229472517|gb|ACQ72773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 28/203 (13%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           + R  F+  P + +++AD S IELR+L+H +AK       +++      ++  +I  VN 
Sbjct: 8   RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRYADILLNGDIHQVNA 60

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 61  DKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGLDK 119

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +   K    + G+++ I GRRI  D   SP           A+N  +QG++A + +R M
Sbjct: 120 LLAAIKT-ASERGFIKAIDGRRIMVD---SPHK---------ALNYCLQGNSAILAKRWM 166

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +   ++++D  L    L  IHDE
Sbjct: 167 VINQQNIKDLNLCCSQLAFIHDE 189


>gi|262342227|gb|ACY54624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 34/218 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKI-TPLYQVFENSL 775
           PNL  +P  +D   ++R  FI  P + ++ AD + IELR+L+H +A+     Y V   + 
Sbjct: 1   PNLAQVP--SD--HRLRELFIPTPGQVMVGADLAGIELRMLSHFLARYDNGRYAVILLNG 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA----- 829
           DIH+        VN +K+    R+  +T+ ++ +YG    ++     ++  S+AA     
Sbjct: 57  DIHQ--------VNADKIGIS-RKLVRTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGK 107

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +  + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N
Sbjct: 108 EIRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALN 154

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 155 YCLQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472209|gb|ACQ72619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472325|gb|ACQ72677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472333|gb|ACQ72681.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472437|gb|ACQ72733.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     R+ F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDAEF----RKLFKASPGQIMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL--RIPRSEAADYIKR 834
              ++  +I   N +K+    RR  KT+ ++ +YG    +L      ++  S+A    K 
Sbjct: 50  ADVLLHGDIHQENADKIGIS-RRAVKTVTYAFLYGAGDAKLGKSYDAQLTESQAKKKGKE 108

Query: 835 ----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y    PG+ + +   K+   ++G++    GRR   D                A+N 
Sbjct: 109 IRQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCSVD------------GAHKALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 156 LLQGSAGVLAKRWLLINHNNTRE--LCCSQLAFVHDE 190


>gi|47934776|gb|AAT39826.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGD-ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + ++   +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R   
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFR 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 CVPEGHKLIGCDASGLELRMLAH 190


>gi|323512097|gb|ADX87557.1| DNA polymerase [Vibrio phage ICP3_2009_A]
          Length = 678

 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 116/308 (37%), Gaps = 53/308 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP---------IKTDLGQKIRRAFISPPTKKLISAD 749
           +H   +    +TGR     PNL  +P          ++  G +  R + +      +  D
Sbjct: 386 IHGQVNPNGAVTGRATHSYPNLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVD 445

Query: 750 YSQIELRILAH-IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            S +ELR L H +AK       F++   I+ ++  +I   N        R +AKT  +  
Sbjct: 446 ASGLELRCLGHFMAK-------FDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGF 498

Query: 809 IYGISPFRLATQL----RIPRSEAADYIKRYFHRFPGIH--------------EYIEKTK 850
           +YG    ++   +       +   A+ IK++    P I               +++  T+
Sbjct: 499 LYGAGAQKIGEIVGKFGEEGKKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQ 558

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
               +  +++ + GR++H   + SP          AA+N  +Q + A I ++ ++   K 
Sbjct: 559 QIKWKRKWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKKWIVEWDKG 606

Query: 911 LE----DHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           ++     H        +  +HDE       +EI   +  I     +      N R PL  
Sbjct: 607 MQAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDT 666

Query: 965 NIKVSNNW 972
             K+  NW
Sbjct: 667 EGKIGANW 674


>gi|281416182|ref|YP_003347917.1| DNA polymerase [Vibrio phage N4]
 gi|237701489|gb|ACR16482.1| DNA polymerase [Vibrio phage N4]
          Length = 678

 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 116/308 (37%), Gaps = 53/308 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP---------IKTDLGQKIRRAFISPPTKKLISAD 749
           +H   +    +TGR     PNL  +P          ++  G +  R + +      +  D
Sbjct: 386 IHGQVNPNGAVTGRATHSYPNLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVD 445

Query: 750 YSQIELRILAH-IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            S +ELR L H +AK       F++   I+ ++  +I   N        R +AKT  +  
Sbjct: 446 ASGLELRCLGHFMAK-------FDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGF 498

Query: 809 IYGISPFRLATQL----RIPRSEAADYIKRYFHRFPGIH--------------EYIEKTK 850
           +YG    ++   +       +   A+ IK++    P I               +++  T+
Sbjct: 499 LYGAGAQKIGEIVGKFGEEGKKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQ 558

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
               +  +++ + GR++H   + SP          AA+N  +Q + A I ++ ++   K 
Sbjct: 559 QIKWKRKWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKKWIVEWDKG 606

Query: 911 LE----DHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           ++     H        +  +HDE       +EI   +  I     +      N R PL  
Sbjct: 607 MQAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDT 666

Query: 965 NIKVSNNW 972
             K+  NW
Sbjct: 667 EGKIGANW 674


>gi|229472593|gb|ACQ72811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 34/212 (16%)

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENSLDIHRMV 781
           + +DL  + R+ F + P   ++ AD + IELR+LAH +A+        V  N  DIH+  
Sbjct: 4   VPSDL--EFRKLFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQEN 60

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK------RY 835
           A +I G++        RR  KT+ ++ +YG    ++        S+ A   K       Y
Sbjct: 61  ADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAY 111

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
               PG+ + +   K+   ++GY++   GRR   D                A+N  +QGS
Sbjct: 112 MDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGS 158

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           A  + ++ M+  H ++  +++    L  +HDE
Sbjct: 159 AGCVAKQWMVHTHNAINLNQIEAYQLAFVHDE 190


>gi|325171294|ref|YP_004251265.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512000|gb|ADX87462.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512146|gb|ADX87605.1| DNA polymerase [Vibrio phage ICP3_2008_A]
 gi|323512194|gb|ADX87652.1| DNA polymerase [Vibrio phage ICP3_2007_A]
          Length = 678

 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 116/308 (37%), Gaps = 53/308 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP---------IKTDLGQKIRRAFISPPTKKLISAD 749
           +H   +    +TGR     PNL  +P          ++  G +  R + +      +  D
Sbjct: 386 IHGQVNPNGAVTGRATHSYPNLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVD 445

Query: 750 YSQIELRILAH-IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            S +ELR L H +AK       F++   I+ ++  +I   N        R +AKT  +  
Sbjct: 446 ASGLELRCLGHFMAK-------FDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGF 498

Query: 809 IYGISPFRLATQL----RIPRSEAADYIKRYFHRFPGIH--------------EYIEKTK 850
           +YG    ++   +       +   A+ IK++    P I               +++  T+
Sbjct: 499 LYGAGAQKIGEIVGKFGEEGKKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQ 558

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
               +  +++ + GR++H   + SP          AA+N  +Q + A I ++ ++   K 
Sbjct: 559 QIKWKRKWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKKWIVEWDKG 606

Query: 911 LE----DHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           ++     H        +  +HDE       +EI   +  I     +      N R PL  
Sbjct: 607 MQAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDT 666

Query: 965 NIKVSNNW 972
             K+  NW
Sbjct: 667 EGKIGANW 674


>gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
 gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
          Length = 646

 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 109/484 (22%), Positives = 195/484 (40%), Gaps = 113/484 (23%)

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS---LEENIYDLS 617
           I E  + +Y RLD+ + D        G+ +D++L++Q    +S +LL    + +  Y+L+
Sbjct: 187 IPESEMELY-RLDQKIND-------RGVLVDRELVRQA---VSCDLLYKDVVTKRAYELT 235

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           G    L +P  +  I        +G + ++   KT A  +E+     +  ++ +L  R L
Sbjct: 236 G----LENPNSVAQI--KSWLGENGVEMESLSKKTVAGLIEE----SDGEVQELLRLRLL 285

Query: 678 ---SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------- 724
              + +K   A       + R   +  FY   +  TGR A     +QN+P          
Sbjct: 286 MAKTSVKKYEAMERSVCSDGRVHGLLQFY--GANRTGRWAGRLVQVQNLPQNHILDLEMA 343

Query: 725 ---IKTD---------------LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              +K                 L + IR AFI  P  + + AD+S IE R+LA ++    
Sbjct: 344 RNLVKQGRFEDVELLYDSTPNVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERW 403

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKV---SPQMRRHAKTINFSIIYGISPFRL----AT 819
             +VF +   I+   A+ +F V IE+V   SP  R+  K    ++ YG +   L    A 
Sbjct: 404 RLEVFASHGKIYEASASAMFHVPIEEVTKGSP-FRQKGKISELALGYGGAVGALTSMGAL 462

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEY------------IEKTKN------FVRQNG--YV 859
            + +   E A  +  +    P I ++             EK K       F  ++G  +V
Sbjct: 463 DMGLVEEELAPLVSAWRSANPHITQFWWDVDAAAVKAVTEKKKTRAGRIVFEYKSGILFV 522

Query: 860 ETIFGRRIHY-------DEINSPKSSIRNINE-----RAAINAP------IQGSAADITR 901
           E   GR++ Y       ++      +   I E     R     P      +QG+A D+  
Sbjct: 523 ELPSGRKLSYVKPRMALNKFGRNGLTYEGIAENKKWDRIETYGPKLVENIVQGTARDLLA 582

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AM+ V       ++   +++  HDE++ EVPE   +      V +++    P+    +P
Sbjct: 583 EAMLRV------EEMGYPIVMHCHDEIIAEVPEGTGSVEEMCAVMAVQ----PEWADGLP 632

Query: 962 LKVN 965
           L+ +
Sbjct: 633 LRAD 636


>gi|262212389|gb|ACY35811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCRSQLAFIHDE 192


>gi|262212085|gb|ACY35659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 99/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+     +  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-HKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    + +   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNPKLLNLCCSQLAFIHDE 192


>gi|328462170|gb|EGF34317.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 79

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 47/73 (64%)

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++AL GD+ DN PG+  +G K A+ L+Q+YG++E I  +   +K+ K +EN++   + A 
Sbjct: 2   MKALMGDNSDNYPGVTKVGPKIASRLIQKYGSVEGIYDHIDEMKKSKLKENLINDKDKAF 61

Query: 242 LSRKLVMLRTDVP 254
           L++KL  +  D P
Sbjct: 62  LAKKLATIDRDSP 74


>gi|32442297|gb|AAP82219.1| DNA polymerase [Podovirus GOM]
          Length = 397

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           RVH   +    +TGR+   EPNL  +P ++   G++ R  +  P    L+  D S +ELR
Sbjct: 239 RVHGRVNTNGAVTGRMTHSEPNLAQVPAVRAPYGKECRSCWTVPEGYSLVGFDASGLELR 298

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH            +    + ++  +I   N      + R  AKT  ++ +YG    +
Sbjct: 299 MLAHY---------MGDREYTNEILHGDIHTANQHLAGLESRDQAKTFIYAFLYGAGDAK 349

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           L T +       +    R+ +  P + +  E+        GY++ + G
Sbjct: 350 LGTIVGGNARTGSALRARFLNGLPALRDLTERVATKA-GAGYLKGLDG 396


>gi|229472525|gb|ACQ72777.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            ++G++A + +R M+   ++++D  L    L  IHDE
Sbjct: 156 CLRGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|148807493|gb|ABR13551.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++QV+ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQVTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKLIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
          Length = 1404

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 119/281 (42%), Gaps = 43/281 (15%)

Query: 718  PNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSL 775
            P+ QNIP   D    +R  F+S   +K   +  DYSQ+E+ ++A + +   L       +
Sbjct: 1086 PSCQNIP--KDDKSSLRHLFVSRFGEKGRCVEIDYSQLEIVVMAVLCEDERLVSDLNQGV 1143

Query: 776  DIHRMVAAEIFGVNIEKVSP----------QMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            D H   A+   G++ +++            ++R+ AKT +F  +YG     L     IP 
Sbjct: 1144 DFHVKRASFFSGISYDEIYNGYKRGEAKFLKLRKVAKTFSFQRLYGAGVPLLHKTTGIPV 1203

Query: 826  SEAADYIKRYFHRFPGIHEY--IEKTKNFVRQNGYVETIF------GRRIHYDEINSPKS 877
             +  + I+R    +PGI  +  + +T      N  + T F      G R+ Y      K+
Sbjct: 1204 QDLQECIRREEEEYPGISRFHRLARTVALRANNPGLPTHFIVELPTGLRVCY------KT 1257

Query: 878  SIRNINERAAINAPIQGSAADITRRAMIS------VHKSLEDHKLATKMLLQIHDELVFE 931
                +N     N PIQ   A++  + MI       V KS    K    M+  +HD L  +
Sbjct: 1258 RDVVLNLPPVKNYPIQSFGAELA-QMMIGRVFRQFVRKSFYGQK--AFMINFVHDSLWLD 1314

Query: 932  ----VPEEEITTASQII--VHSMEKACLPKINLRVPLKVNI 966
                V EE +     I+  V +      P + L+VPLKV++
Sbjct: 1315 CHMSVLEECVHETRTIMEEVDTYVAKTFPGVKLKVPLKVSV 1355


>gi|116671916|ref|YP_832849.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
 gi|116612025|gb|ABK04749.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
          Length = 568

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 129/308 (41%), Gaps = 54/308 (17%)

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLA 706
           KTT Q   ++    +P I+ +L +++L+++ +     + D+  N+      R    Y + 
Sbjct: 254 KTTRQ--WELKESSHPAIEPLLAYKKLARLHAANGWAWLDAWVNN-----GRFQPEYVVG 306

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             ++GR AS       IP      ++IR A  + P  KLI AD SQ+E R+L  +A+ + 
Sbjct: 307 GVVSGRWASRGGGALQIP------RQIRGAVHADPGHKLIVADASQLEPRVLVALAQDSK 360

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + +   +  D++  +AA+ FG +        R  AK      IYG +             
Sbjct: 361 MAEAARDK-DLYAGIAAQGFGGD--------RAKAKVALLGAIYGAT-----------TG 400

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE---INSPKSSIRNIN 883
           E+   + +    +P    ++E+        G V +  GR         + S KS+     
Sbjct: 401 ESGRLMPQLTRTYPRAVGFVEQAAREGEAGGTVTSRLGRSSPPPSDRWLQSQKSTTAEEQ 460

Query: 884 ERA-AI---------NAPIQGSAADITRRAMISVHKSLEDHKLA----TKMLLQIHDELV 929
            RA AI         N  +QGSAAD     +  + + L   + A     +++  +HDE++
Sbjct: 461 RRADAIARSRGRFTRNFVVQGSAADWAACWLAELRRRLRAMRSAGGPTGELVFFLHDEVM 520

Query: 930 FEVPEEEI 937
              P+  +
Sbjct: 521 VHCPDGSV 528


>gi|47934824|gb|AAT39850.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDILF-TKLKFPSGAKT 645
           ++QV+ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 23  MRQVTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLVGVGVKFKQ--KT 80

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 81  EKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 134

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 135 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 190


>gi|29831179|ref|NP_825813.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29608293|dbj|BAC72348.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 564

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 127/325 (39%), Gaps = 65/325 (20%)

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           +I   D+P +K +LE+++L +I   +  S L + +  R  R    Y    T+TGR  +  
Sbjct: 247 EIESVDHPAVKPLLEYKKLYRIWVAHGWSWLQDWV--RDGRFRPEYLPGGTVTGRWVTNG 304

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
                IP      + IRRA ++ P  +L+ AD  Q+E R+LA I++   L +V     D+
Sbjct: 305 GGALQIP------KVIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDL 358

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF- 836
           ++ V+   F  +        R  AK      IYG +              + D +K    
Sbjct: 359 YQSVSDRAFSGD--------RAQAKLAVLGAIYGQT--------------SGDGLKNLAA 396

Query: 837 --HRFPGIHEYIEKTKNFVRQNGYVETIFGR----------------RIHYDEINSPKSS 878
              RFP    Y++       +   V T  GR                 I  DE  +P S 
Sbjct: 397 LRRRFPKAVAYVDDAARAGEEGRLVRTWLGRTSPPAAGASEDSAEEAGIPQDE-PAPSSG 455

Query: 879 I--------RNINERA----AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
                     + N RA    A N  +QGSAAD     ++          LA +++   HD
Sbjct: 456 AAQEWMPGYASTNSRARGRFARNFVVQGSAADWA--LLLLAALRRACAGLAAELVFFQHD 513

Query: 927 ELVFEVPEEEITTASQIIVHSMEKA 951
           E++   P EE  T    I  + + A
Sbjct: 514 EVIVHCPAEEADTVVAAIREAADLA 538


>gi|322497562|emb|CBZ32636.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1579

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 49/278 (17%)

Query: 671  ILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            ILE R L K+  TY +S      + + ++     +H       T TGRLAS  PN QNIP
Sbjct: 1212 ILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRLASANPNCQNIP 1271

Query: 725  IKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIH---- 778
             K D    +R  FIS    K   I ADYSQ+E+  LA +A    + +   N++D H    
Sbjct: 1272 -KED-KSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRV 1329

Query: 779  RMVAAEIFGVNIEKVSP--------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             M+  ++   ++ + S         ++R+ AK  +F   YG     L+    + + +   
Sbjct: 1330 TMMRPDLKYTDVLQRSKKIKEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGLTQDQVRM 1389

Query: 831  YIKRYFHRFPGI-----------HEYIEKTKNFVRQ-------NGYVETIFGRRIHYDEI 872
             I++    + G+           + Y    +N VR         G    + G R  + E 
Sbjct: 1390 LIEKENETYRGVEVFNKMVTLSANSYDASLQNGVRNVRGHQFFKGMFPVLTGSRYVFTES 1449

Query: 873  NSPKSSIR---------NINERAAINAPIQGSAADITR 901
            + P+  +R         N +     N P+QG A +I +
Sbjct: 1450 DVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIVQ 1487


>gi|229472185|gb|ACQ72607.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472199|gb|ACQ72614.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472315|gb|ACQ72672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342203|gb|ACY54612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|229472301|gb|ACQ72665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRTLFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   +++++  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKELNLCCSQLAFIHDE 192


>gi|302529171|ref|ZP_07281513.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302438066|gb|EFL09882.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 566

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 128/311 (41%), Gaps = 46/311 (14%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           D+P +  +LE+++LS++ S    + L   +     R H  Y +   ++GR A+       
Sbjct: 254 DHPAVAPLLEYKELSRLHSANGWAWLDEWVTDGRFRPH--YVVGGVVSGRWATRGGGALQ 311

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP      + +R    + P  KL+ AD +Q+E R+L  ++    L +V   + D++  +A
Sbjct: 312 IP------RALRSCASADPGWKLVVADGAQLEPRVLTALSGDRRLAEV-AAATDLYARLA 364

Query: 783 AEIF-GVNIEKVSP----QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
             +F G     + P      R  AK    S +YG +             EA   +     
Sbjct: 365 EALFSGTRYVPLRPGDTRDDRSRAKIAMLSAMYGGT-----------SGEAGPLLALLRQ 413

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGR--------------RIHYDEINSPKS--SIRN 881
           RFP    Y+E+      +   V +  GR               +  DE    ++  + R+
Sbjct: 414 RFPDAVSYVERAAAAGERGERVRSRLGRTSPAPSAAWRALTGGLTEDEATETRARRASRS 473

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
              R   N  +Q SAAD+T   + ++   L D      ++  +HDE++   P E     +
Sbjct: 474 WG-RFTRNFVVQASAADLTAVLLATLRGRLPDP---AHLVFFLHDEVIVHAPAELADEVA 529

Query: 942 QIIVHSMEKAC 952
           +I+  S+++A 
Sbjct: 530 EIVETSIQEAA 540


>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927]
 gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            brucei]
 gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
            gambiense DAL972]
          Length = 1404

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 119/281 (42%), Gaps = 43/281 (15%)

Query: 718  PNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSL 775
            P+ QNIP   D    +R  F+S   +K   +  DYSQ+E+ ++A + +   L       +
Sbjct: 1086 PSCQNIP--KDDKSSLRHLFVSRFGEKGRCVEIDYSQLEIVVMAVLCEDERLVSDLNQGV 1143

Query: 776  DIHRMVAAEIFGVNIEKVSP----------QMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            D H   A+   G++ +++            ++R+ AKT +F  +YG     L     IP 
Sbjct: 1144 DFHVKRASFFSGISYDEIYNGYKRGEAKFLKLRKVAKTFSFQRLYGAGVPLLHKTTGIPV 1203

Query: 826  SEAADYIKRYFHRFPGIHEY--IEKTKNFVRQNGYVETIF------GRRIHYDEINSPKS 877
             +  + I+R    +PGI  +  + +T      N  + T F      G R+ Y      K+
Sbjct: 1204 QDLQECIRREEEEYPGISRFHRLARTVALRANNPGLPTHFIVELPTGLRVCY------KT 1257

Query: 878  SIRNINERAAINAPIQGSAADITRRAMIS------VHKSLEDHKLATKMLLQIHDELVFE 931
                +N     N PIQ   A++  + MI       V KS    K    M+  +HD L  +
Sbjct: 1258 RDVVLNLPPVKNYPIQSFGAELA-QMMIGRVFRQFVRKSFYGQK--AFMINFVHDSLWLD 1314

Query: 932  ----VPEEEITTASQII--VHSMEKACLPKINLRVPLKVNI 966
                V EE +     I+  V +      P + L+VPLKV++
Sbjct: 1315 CHMSVLEECVHETRTIMEEVDTYVAKTFPGVKLKVPLKVSV 1355


>gi|146081058|ref|XP_001464182.1| mitochondrial DNA polymerase I protein D [Leishmania infantum
           JPCM5]
          Length = 1073

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 117/284 (41%), Gaps = 50/284 (17%)

Query: 671 ILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           ILE R L K+  TY +S      + + ++     +H       T TGRLAS  PN QNIP
Sbjct: 706 ILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRLASANPNCQNIP 765

Query: 725 IKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIH---- 778
            K D    +R  FIS    K   I ADYSQ+E+  LA +A    + +   N++D H    
Sbjct: 766 -KED-KSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRV 823

Query: 779 RMVAAEIFGVNI--------EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
            M+  ++   ++        E    ++R+ AK  +F   YG     L+    + + +   
Sbjct: 824 TMMRPDLKYTDVLQRAKKIKEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGLTQDQVRM 883

Query: 831 YIKRYFHRFPGI-----------HEYIEKTKNFVRQ-------NGYVETIFGRRIHYDEI 872
            I++    + G+           + Y    +N VR         G    + G R  + E 
Sbjct: 884 LIEKENETYRGVEVFNKMVTLSANSYDASLQNGVRNVRGHQFFKGMFPVLTGSRYVFTES 943

Query: 873 NSPKSSIR---------NINERAAINAPIQGSAADITRRAMISV 907
           + P+  +R         N +     N P+QG A +I  + M+ V
Sbjct: 944 DVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGV 986


>gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 647

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 112/261 (42%), Gaps = 51/261 (19%)

Query: 587 GIQIDQDLLKQ---VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           GI ID   +KQ   +     + L++L ++I +L     N +S +Q+ D L       +G 
Sbjct: 209 GIAIDMTFVKQAVEMDEHSREKLIALMQDITNLE----NPNSVQQMKDWLAD-----NGL 259

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVH 700
           +T +   K  A   E +     P+   +LE RQ L+K       ++ N +  + R + + 
Sbjct: 260 ETDSLGKKVVA---EMLKTAPEPL-GTVLELRQQLAKSSVKKYTAMENAVCSDGRARGMF 315

Query: 701 TFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQK 732
            FY   +  TGR +     LQN+P                            I   L + 
Sbjct: 316 QFY--GANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFDALTLLYDSIPEVLSEL 373

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AFI     K I AD+S IE R++A +A       VF+   DI+   A+++F V +EK
Sbjct: 374 IRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGGDIYCASASQMFNVPVEK 433

Query: 793 --VSPQMRRHAKTINFSIIYG 811
             V+  +R+  K    ++ YG
Sbjct: 434 HGVNGHLRQKGKIAELALGYG 454


>gi|229472181|gb|ACQ72605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGI-FRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   +++++  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKELNLCCSQLAFIHDE 192


>gi|229472193|gb|ACQ72611.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472303|gb|ACQ72666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   +++++  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKELNLCCSQLAFIHDE 192


>gi|148807507|gb|ABR13557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           K G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  KKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|157866402|ref|XP_001681907.1| mitochondrial DNA polymerase I protein D [Leishmania major strain
            Friedlin]
 gi|68125206|emb|CAJ03183.1| putative mitochondrial DNA polymerase I protein D [Leishmania major
            strain Friedlin]
          Length = 1577

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 116/281 (41%), Gaps = 55/281 (19%)

Query: 671  ILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            ILE R L K+  TY +S      + + ++     +H       T TGRLAS  PN QNIP
Sbjct: 1210 ILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRLASANPNCQNIP 1269

Query: 725  IKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIH---- 778
             K D    +R  FIS    K   I ADYSQ+E+  LA +A    + +   N++D H    
Sbjct: 1270 -KED-KSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRV 1327

Query: 779  RMVAAEIFGVNI--------EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             M+  ++   ++        E    ++R+ AK  +F   YG     L+    + + +   
Sbjct: 1328 TMMRPDLKYTDVLQRAKKIKEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGLTQDQVRM 1387

Query: 831  YIKRYFHRFPGI-----------HEYIEKTKNFVRQ-------NGYVETIFGRRIHYDEI 872
             I++    + G+           + Y    +N VR         G    + G R  + E 
Sbjct: 1388 LIEKENETYRGVEVFNKMVTLSANSYDASLQNGVRNVRGHQFFKGMFPVLTGSRYVFTES 1447

Query: 873  NSPKSSIRNINERAAI------------NAPIQGSAADITR 901
            + P+  +R   ER A+            N P+QG A +I +
Sbjct: 1448 DVPEGMLR---ERDAVRKSTNFSPTHLKNYPVQGFAGEIVQ 1485


>gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 63/286 (22%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL---------FTK 636
           TGI++D+ L+    A   ++  +      +L+G + N +SP QL D L          TK
Sbjct: 213 TGIRLDRVLVDHAVACDRQHRATTLARAQELTGLE-NPNSPIQLKDWLAAHGAPLQSLTK 271

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR-QLSKIKSTYADSLPNHINKR 695
            +  +   T TGQ                  ++ +L  R +L+K      +++  H+  R
Sbjct: 272 DEVAAALDTATGQ------------------VREVLLLRGELAKSSVKKYEAM-QHVTGR 312

Query: 696 TQRVHTFYSL-ASTMTGRLASLEPNLQNIP----------------------------IK 726
             R   F     +  TGR A     +QN+P                            + 
Sbjct: 313 DGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARSLVRTGNYDAVELLYDSVP 372

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
             L Q IR AFI     + + AD+S IE R++A +A      + F +  D++   A+ +F
Sbjct: 373 DTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATTLEAFRDGKDLYCETASRMF 432

Query: 787 GVNIEK--VSPQMRRHAKTINFSIIY--GISPFRLATQLRIPRSEA 828
           GV ++K   + ++R+  K    +  Y  G+   +    LR+  +E+
Sbjct: 433 GVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRMGLAES 478


>gi|148807585|gb|ABR13593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +GE+       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGERLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K + E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMVYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|268572043|ref|XP_002641219.1| C. briggsae CBR-POLQ-1 protein [Caenorhabditis briggsae]
 gi|187032127|emb|CAP28706.1| CBR-POLQ-1 protein [Caenorhabditis briggsae AF16]
          Length = 631

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           L+      V +M  +GI  D+   KQ   +  K +  LEE I+ L+  KFN++S  +  +
Sbjct: 484 LEMDTCQAVLKMFYSGISFDRVACKQFIGDTRKRIEILEEQIWRLAHGKFNINSSNEASN 543

Query: 632 ILFTKLK--FP--SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           +LF +L   +P  S  K K     T  Q L Q+  G + I++ IL +R +    +     
Sbjct: 544 VLFHRLGLVYPETSSCKIKQRHLPTNKQILNQM-IGQHQIVEKILTYRHIQHTLTQCLLP 602

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
           L N+     +R+H    +  T TGR+ +  PNLQ
Sbjct: 603 LANY----EKRIHCRMEMC-TATGRMLTSSPNLQ 631


>gi|229472495|gb|ACQ72762.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYVMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT  ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTATYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|167467621|ref|ZP_02332325.1| hypothetical protein YpesF_06939 [Yersinia pestis FV-1]
          Length = 314

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 35/244 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N+LF VDG+S  Y    +  L    H+G + V A  GF       ++N R+ +   H   
Sbjct: 2   NYLF-VDGNSLGYYHQQSDKL----HNGEMEVQAAFGF-------VKNVRRYASILHARP 49

Query: 64  IFDYPAVT-FRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFE 116
           +  +   +  R + YP+YKANR   P+M         Q P +     A G+  +  +  E
Sbjct: 50  MILWDGFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAE 109

Query: 117 ADDIIATY-TYIAEKEGFA-VTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKK 171
           ADD+     + +A +     + +++ D D +QLV        L +  K ++++ E   + 
Sbjct: 110 ADDLPGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAEL 169

Query: 172 WGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG---------NLENILINA 221
            G+P P   +  +AL GD+ DNI G+ GIG   A  LL E+G         N  +I+IN 
Sbjct: 170 TGLPTPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINK 229

Query: 222 SRIK 225
            R K
Sbjct: 230 GRYK 233


>gi|262212141|gb|ACY35687.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLGAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472409|gb|ACQ72719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 156 CLQGNSAILAKRWMVIDQQNIKELNLCCSQLAFVHDE 192


>gi|307107569|gb|EFN55811.1| hypothetical protein CHLNCDRAFT_145313 [Chlorella variabilis]
          Length = 494

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 14/158 (8%)

Query: 82  ANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII--S 139
           ANRP +P    P  P  +   Q  G+      G+EADD +A       +   A +++  S
Sbjct: 112 ANRPSLPGGD-PLRPFKQQVEQLGGVYLEAAGGWEADDGMAAVCRAVHQRHPAASVVVAS 170

Query: 140 TDKDLMQLVSPT---------TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190
            D D++QL++P          T L   +  E +  E   ++ G PP       A TG   
Sbjct: 171 GDTDMLQLLAPQVSWLQLHNQTSLGCPLGAELVTAEAFQQQHGFPPSAYPDWLAFTGKKE 230

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +I G   +G +TAA LL  YG+LE +L  AS   Q K
Sbjct: 231 ASIAGA-SVGARTAAKLLGRYGSLEAVLA-ASAAGQLK 266


>gi|47934624|gb|AAT39750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGD-ILFTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + ++   +KF    KT
Sbjct: 23  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLVGVGVKFKQ--KT 80

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 81  EKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 134

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    P+L  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 135 NGAVTGRMTHHSPSLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 190


>gi|229472169|gb|ACQ72599.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472187|gb|ACQ72608.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472201|gb|ACQ72615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472299|gb|ACQ72664.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472313|gb|ACQ72671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472317|gb|ACQ72673.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472413|gb|ACQ72721.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 100/217 (46%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKELNLCCSQLAFVHDE 192


>gi|148807500|gb|ABR13554.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807556|gb|ABR13580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DVPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KL+  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLVGIDASGLELRMLAH 180


>gi|262342265|gb|ACY54643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP         R A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SP---------RKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212187|gb|ACY35710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  K + ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKAVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 654

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 170/430 (39%), Gaps = 86/430 (20%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF--TKLKF 639
           +M  TG+ ID+ L+        +N  +L E  Y+L+G   N +S  QL D L   T L+ 
Sbjct: 199 RMNATGVGIDRQLVDGALTIDEENKKALLEEAYELTGLS-NPNSRNQLLDWLNSNTNLEL 257

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQR 698
               K       T A DL           K +L  R+ L+K   +  + + +   +  + 
Sbjct: 258 EKLTKDSVAAAMTDADDLA----------KKVLTIRKKLAKSSVSKYEMMASATGQDGRL 307

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLG 730
             T     +  TGR A     +QN+P                            +   L 
Sbjct: 308 RGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRVGLGLLFGDVSDTLS 367

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           Q IR A I+     L  AD+S IE R++A ++  T   +VF    DI+   A+ +FGV +
Sbjct: 368 QLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGDIYCASASSMFGVPV 427

Query: 791 EK--VSPQMRRHAKTINFSIIY--GISPFRL--ATQLRIPRSEAADYIKRYFHRFPGIHE 844
            K  V+  +R+  K    ++ Y  G++  +   A  + +   E  + +  +    P I +
Sbjct: 428 VKHGVNGHLRQKGKVAELALGYQGGVNALKAMGALDMGLTEEELPNIVGLWRQASPNIVK 487

Query: 845 Y---IEKTKNFVRQNGY-------------VETIFGRRIHYDEINS------PKSSIR-N 881
           +   +EK   +    G              V+  +G R    E+ S      P   I+ N
Sbjct: 488 FWYTVEKAAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLN 547

Query: 882 INERAAINAPIQGSAADITR-----RAMISVHKSLEDHKLATKML----------LQIHD 926
             ++ A++   Q + A +T      + + ++ +++    LA  ++          + IHD
Sbjct: 548 NFDKEAVHFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHD 607

Query: 927 ELVFEVPEEE 936
           E V EVP++E
Sbjct: 608 EAVIEVPKDE 617


>gi|262212123|gb|ACY35678.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RELVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIAD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|194100278|ref|YP_002003476.1| gp5 [Enterobacteria phage BA14]
 gi|193201273|gb|ACF15753.1| gp5 [Enterobacteria phage BA14]
          Length = 704

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 111/306 (36%), Gaps = 47/306 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS--------PPTKKLISA 748
           R+H   +    +TGR     PN+  +P I+   G+  R AF +        P     +  
Sbjct: 415 RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGV 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR L H      +Y+  E    +  ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLGHF-----MYRYDEGEY-VETILTGDIHTKNQMAAGLPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +     +    IK +  + P I               +++   +    
Sbjct: 529 LYGAGAAKIGQIVGGTAEDGKRLIKNFLEQTPAIAALREAITGTLVKDSKWVGGEQKVTW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +V  + GR++H   + SP          AA+N  +Q + A I +  ++   + L + 
Sbjct: 589 KRRWVRGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIVETERLLLEA 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L          +  +HDE+      +EI      +     +      N R  L    K 
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKT 696

Query: 969 SNNWQE 974
             NW++
Sbjct: 697 GANWKD 702


>gi|148807564|gb|ABR13584.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITGQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKEGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|148807502|gb|ABR13555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKLIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|159046195|ref|YP_001541867.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
 gi|157913954|gb|ABV95386.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
          Length = 516

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 31/229 (13%)

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            + T R+    P+LQN+       +K R         +L   D+ Q E+ I+A ++K   
Sbjct: 277 GSRTSRIHLRSPSLQNMS------KKYRGIIAGREGAELSYVDFDQYEVGIMAALSKDCE 330

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL---ATQLRI 823
           L +++    D++ + A    G++        R+ AK +  S  YG+S   L   A  L +
Sbjct: 331 LMKLYAAG-DMYDLFATTHLGLSGN------RKAAKQLFLSYAYGMSKKALIDAAVSLGV 383

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-DEINSPKSSIRNI 882
            R+ A    K  F  F     +        + NG V T+ G   HY  E + P ++    
Sbjct: 384 DRTRA----KNAFGLFAQYETWKRSVWADFQANGRVATLLGN--HYLRERDGPLTAK--- 434

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            +R++++  +QG+A+ I +RA++ V K L+D      ++L +HD L+FE
Sbjct: 435 EQRSSVSQVVQGTASLIFKRALLDVGK-LDD----VTIVLPMHDALLFE 478


>gi|47934812|gb|AAT39844.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 199

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGD-ILFTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S K + + ++   +KF    KT
Sbjct: 23  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKXIAERLVGVGVKFKQ--KT 80

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 81  EKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 134

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 135 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 190


>gi|326536127|ref|YP_004300559.1| gp5 [Enterobacteria phage 285P]
 gi|256861516|gb|ACV32472.1| gp5 [Enterobacteria phage 285P]
          Length = 704

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 111/306 (36%), Gaps = 47/306 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS--------PPTKKLISA 748
           R+H   +    +TGR     PN+  +P I+   G+  R AF +        P     +  
Sbjct: 415 RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGV 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR L H      +Y+  E    +  ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLGHF-----MYRYDEGEY-VETILTGDIHTKNQLAAGLPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +     +    IK +  + P I               +++   +    
Sbjct: 529 LYGAGAAKIGQIVGGTAEDGKRLIKNFLEQTPAIAALREAITGTLVKDSKWVGGEQKVTW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +V  + GR++H   + SP          AA+N  +Q + A I +  ++   + L + 
Sbjct: 589 KRRWVRGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIVETERLLLEA 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L          +  +HDE+      +EI      +     +      N R  L    K 
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKT 696

Query: 969 SNNWQE 974
             NW++
Sbjct: 697 GANWKD 702


>gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
 gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
          Length = 656

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 122/300 (40%), Gaps = 51/300 (17%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           M   G+++D DL++        +   L +    L+G    L +P     +L  +    +G
Sbjct: 201 MNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLTG----LQNPNSAAQLL--QWLRDNG 254

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSK--IKSTYADSLPNHINKRTQRV 699
            +    Q  T A+ L  IN      ++ +LE RQ L K  IK   A         R + +
Sbjct: 255 TEADNLQKATVAELLGGINPNK---VRRMLEIRQQLGKTSIKKYVAMDTARGEGDRVRGL 311

Query: 700 HTFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQ 731
             +Y   +  TGR A     +QN+P                            +   L Q
Sbjct: 312 TQYY--GANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNYDGVRILYGNVPDTLSQ 369

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
            IR AFI     K + AD+S IE R++A +A    + +VF     I+   A+++FGV +E
Sbjct: 370 LIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVNEVFATHGKIYEATASQMFGVPVE 429

Query: 792 KVS---PQ--MRRHAKTINFSIIY--GISPF--RLATQLRIPRSEAADYIKRYFHRFPGI 842
           +++   P+  +R+  K    ++ Y  G S      A Q+ +   E  D ++R+    P I
Sbjct: 430 RIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMGALQMGLTEEELPDIVQRWRQANPRI 489


>gi|229472467|gb|ACQ72748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QG A  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGCAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|212671402|ref|YP_002308401.1| DNA polymerase [Kluyvera phage Kvp1]
 gi|211997246|gb|ACJ14563.1| DNA polymerase [Kluyvera phage Kvp1]
          Length = 704

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 111/306 (36%), Gaps = 47/306 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS--------PPTKKLISA 748
           R+H   +    +TGR     PN+  +P I+   G+  R AF +        P     +  
Sbjct: 415 RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGV 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR L H      +Y+  E    +  ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLGHF-----MYRYDEGEY-VETILTGDIHTKNQLAAGLPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +     +    IK +  + P I               +++   +    
Sbjct: 529 LYGAGAAKIGQIVGGTAEDGKRLIKNFLEQTPAIAALREAITGTLVKDSKWVGGEQKVTW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +V  + GR++H   + SP          AA+N  +Q + A I +  ++   + L + 
Sbjct: 589 KRRWVRGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIVETERLLLEA 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L          +  +HDE+      +EI      +     +      N R  L    K 
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKT 696

Query: 969 SNNWQE 974
             NW++
Sbjct: 697 GANWKD 702


>gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 674

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           G + +LE   ++IP    L Q IR AFI     K I AD+S IE R+LA +A      +V
Sbjct: 381 GNVEALEMLYEDIP--DTLSQLIRTAFIPRTGLKFIVADFSAIEARVLAWLAGEKWRMRV 438

Query: 771 FENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           F    DI+   A+++F V +EK  V+  +R+  K    ++ YG S
Sbjct: 439 FAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGS 483


>gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU]
 gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF]
 gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS]
          Length = 735

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R   I  P KKL+ ADYS +E R LA +A        F   LDI+++ A ++FG++ + 
Sbjct: 383 VRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALDTFRAGLDIYKVTAGKMFGISPDD 442

Query: 793 VSPQMRRHAKTINFSIIYG 811
           V    R+  K     + YG
Sbjct: 443 VDGYRRQIGKACELGLGYG 461


>gi|262212125|gb|ACY35679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 QQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|6537229|gb|AAF15571.1|AF179378_2 exonuclease homolog [Mycoplasma fermentans]
          Length = 154

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 7/117 (5%)

Query: 143 DLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
           DL+QLV+  T +   VKE      E  DI +      I P ++   + L GDS DN+ G+
Sbjct: 1   DLLQLVNENTSVIKVVKENFKVSYELEDINNFENIHEIKPSQVADYKGLAGDSSDNLKGV 60

Query: 197 PGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
            GIG+K A  L+Q + ++EN+  N  ++K K  ++ +L   + A L + L  L  +V
Sbjct: 61  NGIGHKGAIKLIQTFDSIENMYQNIDQVKGKT-KDKLLSEKDQAFLCKSLAKLNLNV 116


>gi|321399177|emb|CAM66559.2| putative mitochondrial DNA polymerase I protein D [Leishmania
            infantum JPCM5]
          Length = 1579

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 114/278 (41%), Gaps = 49/278 (17%)

Query: 671  ILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            ILE R L K+  TY +S      + + ++     +H       T TGRLAS  PN QNIP
Sbjct: 1212 ILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRLASANPNCQNIP 1271

Query: 725  IKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIH---- 778
             K D    +R  FIS    K   I ADYSQ+E+  LA +A    + +   N++D H    
Sbjct: 1272 -KED-KSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRV 1329

Query: 779  RMVAAEIFGVNI--------EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             M+  ++   ++        E    ++R+ AK  +F   YG     L+    + + +   
Sbjct: 1330 TMMRPDLKYTDVLQRAKKIKEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGLTQDQVRM 1389

Query: 831  YIKRYFHRFPGI-----------HEYIEKTKNFVRQ-------NGYVETIFGRRIHYDEI 872
             I++    + G+           + Y    +N VR         G    + G R  + E 
Sbjct: 1390 LIEKENETYRGVEVFNKMVTLSANSYDASLQNGVRNVRGHQFFKGMFPVLTGSRYVFTES 1449

Query: 873  NSPKSSIR---------NINERAAINAPIQGSAADITR 901
            + P+  +R         N +     N P+QG A +I +
Sbjct: 1450 DVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIVQ 1487


>gi|229472179|gb|ACQ72604.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 SYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|148807513|gb|ABR13560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H+  +  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPGAKLIYEYLMLQK-RAAQIDSWLTHV--KDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S ++LR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLKLRMLAH 180


>gi|262212131|gb|ACY35682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI    + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTLGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK---- 833
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++      P S  A   K    
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYGKPLSSQAAKKKGKEI 109

Query: 834 --RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
 gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 513

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 125/311 (40%), Gaps = 41/311 (13%)

Query: 664 DNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           D+P +  +L  R LSK+ ST    + DS       R  R    Y     ++GR AS    
Sbjct: 227 DHPAVPLLLRHRDLSKLFSTNGWQWLDSW-----VRDDRFRPVYVPGGVVSGRWASRGGG 281

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
              IP      + +R + I+ P    + AD  Q+E RILA ++    +      + D++ 
Sbjct: 282 ALQIP------KPLRSSVIADPGHTFVIADAGQLEPRILAAMSGDARMVAA-AGADDLYA 334

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            VAAE F  +        R  AK     ++YG +     + L + R+           RF
Sbjct: 335 PVAAETFDGD--------RGKAKVAILGVLYGATAGEARSLLTLLRT-----------RF 375

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P   EY+E+      +   V +  GR       +           R   N  +Q +AA+ 
Sbjct: 376 PVAVEYVERAARAGERGEVVHSWLGRACPPPSPDFWSHGDARSRGRFTRNFVVQATAAEW 435

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKI 956
               +  + + L D   +  +  Q HDE++    + +  +A++ ++ ++E A      + 
Sbjct: 436 ALCVLADLRRRLADDPDSELVFFQ-HDEVMVHTRDPD--SATRHVLGAVEVATRLLFGET 492

Query: 957 NLRVPLKVNIK 967
            +R P+ V ++
Sbjct: 493 RVRFPMDVAVR 503


>gi|262212171|gb|ACY35702.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  +T+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVETVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212111|gb|ACY35672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342243|gb|ACY54632.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI    + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTLGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK---- 833
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++      P S  A   K    
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEI 109

Query: 834 --RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|119637765|ref|YP_919001.1| DNA polymerase [Yersinia phage Berlin]
 gi|119391796|emb|CAJ70669.1| hypothetical protein [Yersinia phage Berlin]
          Length = 704

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 109/304 (35%), Gaps = 47/304 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS--------PPTKKLISA 748
           R+H   +    +TGR     PN+  +P I+   G+  R AF +        P     +  
Sbjct: 415 RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGV 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR L H      +Y+  E    +  ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLGHF-----MYRYDEGEY-VETILTGDIHTKNQMAAGLPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +     +    IK +  + P I               +++   +    
Sbjct: 529 LYGAGAAKIGQIVGGTSEDGKRLIKNFLEQTPAIAALREAITGALVKDSKWVGGEQKVTW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED- 913
           +  +V  + GR++H   + SP          AA+N  +Q + A I +  ++   + L + 
Sbjct: 589 KRRWVRGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIVKTEEMLLEM 636

Query: 914 ---HKLATKMLLQ--IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
              H       L   IHDE       EEI      +     +      N R  L    K+
Sbjct: 637 GYKHGWDGDFCLMGWIHDEQQLACRTEEIAKVVIEVSQQAMRWVGDHFNFRCQLDTEGKM 696

Query: 969 SNNW 972
             NW
Sbjct: 697 GPNW 700


>gi|151505395|gb|ABG29150.2| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 146

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
           I   +  +GI P ++   + L GD+ D + G+ GIG K A  LL E+G+LE I  N  +I
Sbjct: 14  INEFVDIYGINPNQIPDYKGLAGDTSDRLKGVAGIGPKKAVSLLNEFGSLEAIYENIGKI 73

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
              K +E +    E+A   +KL +L  DV +   +++
Sbjct: 74  -SGKTKEYLENDYESAHFCKKLAILNPDVEMDTDIDN 109


>gi|262212301|gb|ACY35767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RILVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342237|gb|ACY54629.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 30/215 (13%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N     
Sbjct: 3   NLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYAD 52

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DYI 832
            ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     +  
Sbjct: 53  ILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIR 111

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  +
Sbjct: 112 QAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYCL 158

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 159 QGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 193


>gi|262342247|gb|ACY54634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 99/216 (45%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +QG++A + +R M+   ++++D  L    L  +HD
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCPQLAFVHD 191


>gi|262342259|gb|ACY54640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 30/194 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMI 905
           +QG++A + +R M+
Sbjct: 157 LQGNSAILAKRWMV 170


>gi|262342213|gb|ACY54617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  K + ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKAVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|229472521|gb|ACQ72775.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R  +   ++++D  L    L  +HDE
Sbjct: 156 CLQGNSAILAKRWTVINQQNIKDLNLCCSQLAFVHDE 192


>gi|229472421|gb|ACQ72725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   +++ +  L    L  +HDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIRELNLCCSQLAFVHDE 192


>gi|262212219|gb|ACY35726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 104/217 (47%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +D G   R  FI  P + ++ AD + IELR+L+H +A+       ++N   
Sbjct: 1   PNLAQVP--SDHG--FRELFIPTPGQVMVGADLAGIELRMLSHSLAR-------YDNGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----D 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N 
Sbjct: 109 IRQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R  +    +L+   L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWTVINQNNLKLLNLCCSQLAFIHDE 192


>gi|320010013|gb|ADW04863.1| DNA-directed DNA polymerase [Streptomyces flavogriseus ATCC 33331]
          Length = 568

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/433 (20%), Positives = 164/433 (37%), Gaps = 87/433 (20%)

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V ++M+ +G+    D+ + V  E+      L E  Y   GE   L+         F +  
Sbjct: 170 VAAEMDASGLPWRADVHRAVLNEL------LGER-YPGGGEPRRLAEAADEVSAAFGRRV 222

Query: 639 FP----------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA-DS 687
            P          + A  K G   T   +LE +   D+P ++ ++ +++L ++ + +    
Sbjct: 223 RPDLPADVVKAFAQAGIKVGS--TRRWELEAL---DHPAVEPLIRYKKLYRVWTAHGWGW 277

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L + +  R  R    Y    T++GR  +       IP      + IRRA ++    +L+ 
Sbjct: 278 LQDWV--RDGRFRPGYQPGGTVSGRWTTNGGGALQIP------KVIRRAVVADEGWRLVV 329

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD  Q+E R+LA I++   L +V  +  D+++ ++   F  +        R HAK     
Sbjct: 330 ADADQMEPRVLAAISRDRGLMEVAGHEGDLYKALSDRAFHGD--------RDHAKIALLG 381

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            +YG +              + D +K       RFP    Y++       +   V T  G
Sbjct: 382 AVYGQT--------------SGDGLKNLAALRRRFPQAVAYVDDAAKAGEEGRLVRTWLG 427

Query: 865 R----RIHYDEIN----------------------SPKSSIRNINERAAI--NAPIQGSA 896
           R     +  DE                        +P  +  N   R     N  +QGSA
Sbjct: 428 RTSPPAVGADEDGEAGIPQESEEPPSGEATGTYGFTPGYASSNARARGRFTRNFVVQGSA 487

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME---KACL 953
           AD     + ++ ++L    +  +++   HDE++   P EE +   + I  + E   +   
Sbjct: 488 ADWALLLLAALRRALAAGGMRAELVFFQHDEVIVHCPAEEASAVVEAIREAGELAGRVAF 547

Query: 954 PKINLRVPLKVNI 966
            +  +R P    +
Sbjct: 548 GETPVRFPFTTAV 560


>gi|109289266|gb|ABG29119.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|109289269|gb|ABG29121.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|109289272|gb|ABG29123.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|109289275|gb|ABG29125.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 149

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
           I   +  +GI P ++   + L GD+ D + G+ GIG K A  LL E+G+LE I  N  +I
Sbjct: 17  INEFVDIYGINPNQIPDYKGLAGDTSDRLKGVAGIGPKKAVSLLNEFGSLEAIYENIGKI 76

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
              K +E +    E+A   +KL +L  DV +   +++
Sbjct: 77  -SGKTKEYLENDYESAHFCKKLAILNPDVEMDTDIDN 112


>gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
 gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
          Length = 646

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           +G  A+LE    ++P    L + IR AF+     K I AD+S IE R++A +A      +
Sbjct: 352 SGNFAALEMLYDSVP--EVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQE 409

Query: 770 VFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           VFE+  DI+   A+++F V +EK  V+  +R+  K    ++ YG S
Sbjct: 410 VFESGGDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGS 455


>gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 516

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 107/270 (39%), Gaps = 36/270 (13%)

Query: 664 DNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           D+P +  +L  R+L+K+ ST    + DS       R  R    Y     ++GR AS    
Sbjct: 232 DHPAVPLLLRHRELAKLYSTNGWQWMDSW-----VRGDRFRPIYVPGGVVSGRWASRGGG 286

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
              IP      + +R + ++ P    + AD  Q+E RILA ++    +     +  D++ 
Sbjct: 287 ALQIP------KTMRSSVVADPGHVFVVADAGQLEPRILAAMSGDRRMMAAAGDD-DLYA 339

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           +V AE FG +        R  AK     ++YG +             EA   +     RF
Sbjct: 340 LVGAEAFGGD--------RAKAKVAILGVLYGAT-----------AGEAKALLILLRKRF 380

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P   EY+E+      +   V+++ GR       +       +   R   N  +Q +A++ 
Sbjct: 381 PVAVEYVEQAAKAGERGEVVKSLLGRACPPPSPDFYSHGDAHARGRFTRNFVVQATASEW 440

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELV 929
               +  + + L +      +  Q HDE+V
Sbjct: 441 ALCLLADLRRRLAEDPDGELVFFQ-HDEVV 469


>gi|262342145|gb|ACY54583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F   P + ++ AD + IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDS----RFRELFQPSPGQLMVGADLAGIELRMLSH------FLARYDQGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG    ++     ++  S AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RRLVKTVTYAFLYGAGDEKIGHSYDKLLSSTAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + ++  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLDAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +++   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQHNVKQLDLCCSQLAFIHDE 192


>gi|307249710|ref|ZP_07531689.1| hypothetical protein appser4_5130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858218|gb|EFM90295.1| hypothetical protein appser4_5130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 68

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           MI + K++       KM++Q+HDELVFEV EE I   SQ+I   MEKA    I L+VPL 
Sbjct: 1   MIGIDKAIRGDD-NIKMIMQVHDELVFEVKEELIEHYSQLIKAEMEKA----IQLKVPLI 55

Query: 964 VNIKVSNNWQE 974
             + V +NW E
Sbjct: 56  AEVGVGDNWDE 66


>gi|262342199|gb|ACY54610.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGADDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A++  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALSYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|148807571|gb|ABR13586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEEVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 63/286 (22%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL---------FTK 636
           TGI++D+ L+        ++  +      +L+G + N +SP QL D L          TK
Sbjct: 213 TGIRLDRVLVDHAVQCDRQHRATTLARAQELTGLE-NPNSPIQLKDWLTAHGTPLQSLTK 271

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR-QLSKIKSTYADSLPNHINKR 695
            +  +   T TG+                  ++ +L+ R +L+K      +++  H+  R
Sbjct: 272 DEVAAALDTATGE------------------VREVLQLRGELAKSSVKKYETM-QHVAGR 312

Query: 696 TQRVHTFYSL-ASTMTGRLASLEPNLQNIP----------------------------IK 726
             R   F     +  TGR A     +QN+P                            + 
Sbjct: 313 DGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEARDLVRTGEFEAVELLYDSVP 372

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
             L Q IR AF+     + + AD+S IE R++A +A      Q F +  D++   A+ +F
Sbjct: 373 DTLSQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEATTLQAFRDGKDLYCETASRMF 432

Query: 787 GVNIEK--VSPQMRRHAKTINFSIIY--GISPFRLATQLRIPRSEA 828
           GV ++K   + ++R+  K    +  Y  G+   +    LR+  +E+
Sbjct: 433 GVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRMGLAES 478


>gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 560

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           G + +LE   ++IP    L Q IR AFI     K I AD+S IE R+LA +A      +V
Sbjct: 267 GNVEALEMLYEDIP--DTLSQLIRTAFIPRTGFKFIVADFSAIEARVLAWLAGEKWRMRV 324

Query: 771 FENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           F    DI+   A+++F V +EK  V+  +R+  K    ++ YG S
Sbjct: 325 FAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGS 369


>gi|294083960|ref|YP_003550717.1| putative phage exonuclease [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663532|gb|ADE38633.1| putative phage exonuclease [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 242

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 20/178 (11%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
           P   FR ++ P YK+NR K  + +  +  LV    Q++     +    EADD +   + +
Sbjct: 65  PDANFRKDVDPSYKSNRKKTRKPVGYK-ALVEWVEQSY--RTFKKSTLEADDCLGILSTM 121

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
            +  G  + ++S DKDLM +      LY   K+E++ I           ++    Q + G
Sbjct: 122 PDNVGKCI-VVSDDKDLMTIPGQ---LYRPTKDERMTITEQ------DADRFFLTQTMVG 171

Query: 188 DSIDNIPGIPGIGYKTAALLL---QEYGNLENILINASRIK----QKKRRENILEYAE 238
           D++D   GI GIG K A  +L     +G +E   + A   K    Q+ R   IL +++
Sbjct: 172 DTVDGYKGIHGIGPKKAEAILGSHPSWGAVEQAFLKAGMTKDDAIQQARLARILRWSD 229


>gi|47934818|gb|AAT39847.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDILF-TKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 23  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLVGVGVKFKQ--KT 80

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 81  EKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 134

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 135 NGAVTGRMTHHGPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 190


>gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4]
 gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4]
          Length = 513

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 125/311 (40%), Gaps = 41/311 (13%)

Query: 664 DNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           D+P +  +L  R LSK+ ST    + DS       R  R    Y     ++GR AS    
Sbjct: 227 DHPAVPLLLHHRDLSKLFSTNGWQWLDSW-----VRDNRFRPVYVPGGVVSGRWASRGGG 281

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
              IP      + +R + I+ P    + AD  Q+E RILA ++  T +      + D++ 
Sbjct: 282 ALQIP------KPLRSSVIADPGHTFVIADAGQLEPRILAAMSGDTRMVAA-AGADDLYA 334

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            VAAE F  +        R  AK     ++YG +     + L + R+           RF
Sbjct: 335 PVAAETFDGD--------RGKAKVAILGVLYGATAGEARSLLTLLRT-----------RF 375

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P   EY+E+      +   V +  GR       +           R   N  +Q +A++ 
Sbjct: 376 PVAVEYVERAARAGERGEVVHSWLGRACPPPSPDFWSHGDARSRGRFTRNFVVQATASEW 435

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKI 956
               +  + + L D   +  +  Q HDE++      E  +A++ ++ +++ A      + 
Sbjct: 436 ALCVLADLRRRLADEPDSELVFFQ-HDEVMVHTRNPE--SATRHVLGAVDVATRLLFGET 492

Query: 957 NLRVPLKVNIK 967
            +R P+ V ++
Sbjct: 493 RVRFPMDVAVR 503


>gi|229472537|gb|ACQ72783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R    + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALLTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGNKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|262342207|gb|ACY54614.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 QQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|312141752|ref|YP_004009088.1| DNA polymerase i pola2 [Rhodococcus equi 103S]
 gi|311891091|emb|CBH50410.1| putative DNA polymerase I PolA2 [Rhodococcus equi 103S]
          Length = 521

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 35/206 (16%)

Query: 664 DNPIIKNILEWRQLSKIKS----TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           D+P ++ +L +R L+K+ +    T+ D+       R  R    Y     ++GR AS    
Sbjct: 236 DHPAVEPLLRYRDLAKLHAANGWTWLDAW-----VRGNRFRPVYVPGGVVSGRWASRGGG 290

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
              IP      + +R + I+ P    + AD  Q+E RILA ++   P       + D++ 
Sbjct: 291 ALQIP------KALRTSVIADPGHTFVIADAGQLEPRILAAMSG-DPRMTAAAGTDDLYA 343

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           +VAAE+FG +        R  AK     ++YG +             EA   +     RF
Sbjct: 344 LVAAEVFGGD--------RAKAKIAILGVLYGATA-----------GEARALLTLLRKRF 384

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGR 865
           P   + +E       +   V +  GR
Sbjct: 385 PVAVQLVEDAARAGERGEVVHSWLGR 410


>gi|262212065|gb|ACY35649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212229|gb|ACY35731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI    + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTLGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK---- 833
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++      P S  A   K    
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEI 109

Query: 834 --RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|229472443|gb|ACQ72736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSH------FLARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFVHDE 192


>gi|262212053|gb|ACY35643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + G +I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGGKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|47934790|gb|AAT39833.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGDILF-TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + L    +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLVGVGVKFKQ--KTEKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVPAPYGKECRSFW 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 CVPEGHKLIGCDASGLELRMLAH 190


>gi|148807539|gb|ABR13572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKNGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|148807532|gb|ABR13569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DVPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|271967935|ref|YP_003342131.1| DNA polymerase I - 3'-5' exonuclease-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511110|gb|ACZ89388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains-like
           protein [Streptosporangium roseum DSM 43021]
          Length = 531

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/374 (20%), Positives = 146/374 (39%), Gaps = 61/374 (16%)

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            L +L + + +  G  FN  SP+Q+    F     P  +        T A +++++   D
Sbjct: 195 RLQALADQVAEAFGTPFNPDSPQQIVKA-FKSAGVPVAS--------TRAHEIKKV---D 242

Query: 665 NPIIKNILEWRQLSKIKS----TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
           +P +  +L ++++++I S     +AD        R  R    Y +   ++GR A+     
Sbjct: 243 HPGVAPLLAYKEMARIYSFHGWVWADQW-----VRDHRFRPEYVVGGVVSGRWATSGGGA 297

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
             IP      + +R+  ++     L+ AD +Q+E R+LA +A    L +     +D+++ 
Sbjct: 298 LQIP------KVMRQVVVADEGWTLVVADAAQLEPRVLAAMAGDGGLARA-AGQIDLYQA 350

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           + A+ FG          R  AK    S +YG +             +A   +     RFP
Sbjct: 351 L-AQAFGGE--------RDSAKIAMLSAMYGGT-----------SGDAPKLLAVMRQRFP 390

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRI-----HYDEINSPKSSIRNINERAAI--NAPIQ 893
             ++++E       +   V +  GR        + E+ S     R   +R     N  +Q
Sbjct: 391 RAYQFVEDAARSGEEGKLVRSWLGRTCPQPSAGWRELVSGPEGKRAARDRGRFTRNFVVQ 450

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP---EEEITTASQIIVHSMEK 950
            +AA+     M  +   L D     +++   HDE++   P    EE+  A         +
Sbjct: 451 ATAAEWALALMAVLRGLLPD---PARLVFFQHDEVMVHCPAELAEEVVAAVGRAAEEATR 507

Query: 951 ACLPKINLRVPLKV 964
                  +R P++ 
Sbjct: 508 LLFGPTPVRFPMQA 521


>gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 663

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 34/171 (19%)

Query: 675 RQLSKIKSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-------- 724
           +QL+K       ++ N +  + R + +  FY   +  +GR A     LQN+P        
Sbjct: 304 QQLAKSSVKKYQAMQNAVCDDGRARGMFQFY--GANRSGRWAGRIIQLQNLPQNHMEDLD 361

Query: 725 -----IKTD---------------LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
                +K+                L + IR AFI     K   AD+S IE R++AH+AK 
Sbjct: 362 VARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAIEARVIAHLAKE 421

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
               +VF ++ DI+   A+ +FGV +EK   +  +R+  K    ++ YG S
Sbjct: 422 RWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYGGS 472


>gi|31711656|ref|NP_853574.1| gp14 [Enterobacteria phage SP6]
 gi|31505660|gb|AAP48753.1| gp14 [Enterobacteria phage SP6]
 gi|40787031|gb|AAR90005.1| 13 [Enterobacteria phage SP6]
          Length = 849

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 23/225 (10%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           N+ NIP +      +R  FI+   K ++  D + +ELR+L+H     P YQ      DIH
Sbjct: 542 NVVNIPARGLY--PLRDLFIAGKGKMILGCDGAGLELRVLSHFMN-DPEYQEIVLHGDIH 598

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
                     N  K     R  AKT  ++ +YG     LA    +   E  + + R+   
Sbjct: 599 TH--------NQLKAGLPKRDMAKTFIYAFLYGSGIANLAAVCGVTEDEMKEVVARFEIE 650

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            P +    E       + GY++   G   H+  I   + S   + E   +N  +Q + + 
Sbjct: 651 LPSLARLRENVIAAGNKFGYLQAPDG---HWGRI---RMSGGELKEHTMLNVLLQMTGSL 704

Query: 899 ITRRAMISVHKSLEDHKLATKML------LQIHDELVFEVPEEEI 937
             + A++     +    +A   L        +HDE+  EVPEEE+
Sbjct: 705 CMKYALVKAFAVMRREGVALDNLGNPCGVANVHDEIQMEVPEEEV 749


>gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
 gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
          Length = 538

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 110/278 (39%), Gaps = 49/278 (17%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGAK 644
           TGI +D  L     A   ++  +      +L+G + N +SP QL + L T   +  S AK
Sbjct: 95  TGILLDHTLADAAVALDDQHRAATLARARELTGLE-NPNSPIQLKEWLTTHGCEMSSLAK 153

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWR---QLSKIKSTYADSLPNHINKRTQRVHT 701
                      D+E         +K +LE R     S +K   A       + R + +  
Sbjct: 154 A----------DVEAALESATGKVKEVLELRGDLAKSSVKKYQAMHNVTGTDGRARGLIQ 203

Query: 702 FYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKI 733
           FY   +  TGR A     +QN+P                            +   L Q I
Sbjct: 204 FY--GAGRTGRFAGRLVQVQNLPRNYLPDLDQARTLTRQRNLDALELLYDSVPDTLSQLI 261

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK- 792
           R AFI     + I ADYS IE R++A +A  T     F +  D++   A+ +FGV +EK 
Sbjct: 262 RTAFIPSAGCRFIVADYSAIEARVIAWLAGETSTLAAFRDGKDLYCETASRMFGVPVEKH 321

Query: 793 -VSPQMRRHAKTINFSIIY--GISPFRLATQLRIPRSE 827
            ++ ++R+  K    +  Y   +   +    LR+  +E
Sbjct: 322 GINAELRQKGKIATLACGYNGSVGALKAMGALRMGLAE 359


>gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
 gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
          Length = 653

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 119/280 (42%), Gaps = 54/280 (19%)

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           +L H+ +R++   +    QM    + +D+    QV++E+    +SL             L
Sbjct: 192 QLWHLDQRINARGLFCDLQMVEGALAVDE----QVTSELRAEAISLT-----------GL 236

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKI-- 680
            +PK +   L   L   +G + +  Q  T ++ +++++ G     + +LE RQ LSK   
Sbjct: 237 DNPKSV-QQLSKWLAEETGEEVENLQKGTVSKLIDKLDEGK---ARRVLEIRQELSKTST 292

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------------- 724
           K   A       ++R + +  FY   +  TGR A     +QN+P                
Sbjct: 293 KKYAAMQTAAGSDQRVRGLLQFY--GANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVE 350

Query: 725 ------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                       +   L Q IR AF+ P  K+L  AD+S IE R++A +A       VF 
Sbjct: 351 RKVEMLKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFA 410

Query: 773 NSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSIIY 810
               I+   A+++FGV IE++     +R+  K    ++ Y
Sbjct: 411 THGKIYEASASQMFGVPIEQIGKGSDLRQKGKVAELALGY 450


>gi|262212183|gb|ACY35708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  K + ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKAVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|119960534|ref|YP_949044.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119947393|gb|ABM06304.1| putative DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 563

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 131/325 (40%), Gaps = 51/325 (15%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +P I+ +L +++LS++ +    S  +    R  R H  Y +   ++GR AS       IP
Sbjct: 261 HPAIQPLLAYKKLSRLHTANGWSWLD-AWVRDGRFHPEYVVGGVVSGRWASRGGGALQIP 319

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                 + IR A  + P  KLI AD SQ+E R+L  +A+ T + +   +  D++  +AA+
Sbjct: 320 ------RNIRAAVHADPGHKLIVADASQLEPRVLVALAQDTKMAEAARDK-DLYAGIAAQ 372

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
            FG +        R  AK      +YG +             E+   + +    +P    
Sbjct: 373 GFGGD--------RAKAKIALLGAVYGAT-----------TGESGRLMPQLTRTYPRAVG 413

Query: 845 YIEKTKNFVRQNGYVETIFGRRI---HYDEINSPKSSIRNINERA----------AINAP 891
           ++E+          V T  GR         + S +S+      RA            N  
Sbjct: 414 FVEQAAREGEAGRTVTTRLGRSSPPPSAGWLRSQQSTTAEEQRRADNLARSRGRFTRNFV 473

Query: 892 IQGSAADIT----RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +QGSAA+            +     +   A +++  +HDE++   P++ +       + +
Sbjct: 474 VQGSAAEWAACWLAELRRRLRALRAEGSAAGELVFFLHDEVMVHAPDDAVDA----CISA 529

Query: 948 MEKACLPKINL---RVPLKVNIKVS 969
           +E+A      L   R+P++  + V+
Sbjct: 530 IEEAATAAKELMFGRIPVEFPVSVA 554


>gi|262212213|gb|ACY35723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 30/215 (13%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N     
Sbjct: 1   NLAQVP--SD--HRFRELFILTPGQVMVGADLAGIELRMLSH------FLARYDNGRYAD 50

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DYI 832
            ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     +  
Sbjct: 51  ILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIR 109

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  +
Sbjct: 110 QAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYCL 156

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 QGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 191


>gi|262212147|gb|ACY35690.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGADDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A++  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALSYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212077|gb|ACY35655.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + +  AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMAGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHRVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINRNNLKLLNLCCSQLAFIHDE 192


>gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 971

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 107/254 (42%), Gaps = 41/254 (16%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI ID +L KQ  A  +K+  SL   + + +G +   S  + LG +    LK  S  K +
Sbjct: 224 GIAIDLELAKQAVAMDAKSRESLMAALKEKTGLENPNSVLQMLGWLEDHGLKTDSLGKKQ 283

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             +   TAQ+           ++++L+ RQ L+K       ++ N + +  +    F   
Sbjct: 284 VKELLKTAQE----------PLRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFY 333

Query: 706 ASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAF 737
            +  TGR+A     LQN+P                            I   L Q IR AF
Sbjct: 334 GANRTGRVAGRHIQLQNLPQNHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAF 393

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSP 795
           +     K + +D+S IE R+++ +A        F    DI+   A+++FGV + K  V+ 
Sbjct: 394 VPRAGMKFVVSDFSAIEARVISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNG 453

Query: 796 QMRRHAKTINFSII 809
           ++R+  K    + I
Sbjct: 454 ELRQKGKIAELACI 467


>gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 649

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P+   L Q IR AFI     + I AD+S IE R+LA +A      Q F    D++   A+
Sbjct: 363 PLPDTLSQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGTLQAFREGKDLYCQTAS 422

Query: 784 EIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
            +FGV +EK   + ++R+  K    +  YG S
Sbjct: 423 RMFGVPVEKHGANSELRQKGKIAVLACGYGGS 454


>gi|262212373|gb|ACY35803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 38/219 (17%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P   +     R+ F + P + ++ AD S IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVPSDANF----RKLFTATPGQVMVGADLSGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFR-----LATQLRIPRSEA 828
              ++  +I   N +K+    RR  KT+ ++ +YG     P R     L+ Q    + + 
Sbjct: 50  ASILLHGDIHQENADKIGIS-RRQVKTVIYAFLYGAGDSKPGRSYDPQLSEQQ--AKKKG 106

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +  + Y    PG+ + +   K+   ++GY+     RR   D                A+
Sbjct: 107 KEIRQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDSRRCTVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  I +R M+  + + ++  L    L  IHDE
Sbjct: 154 NYLLQGSAGVIAKRWMLINYTNTKE--LCCSQLAFIHDE 190


>gi|148807552|gb|ABR13578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNERVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|325672986|ref|ZP_08152680.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
 gi|325556239|gb|EGD25907.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
          Length = 521

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 35/206 (16%)

Query: 664 DNPIIKNILEWRQLSKIKS----TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           D+P ++ +L +R L+K+ +    T+ D+       R  R    Y     ++GR AS    
Sbjct: 236 DHPAVEPLLRYRDLAKLHAANGWTWLDAW-----VRGNRFRPVYVPGGVVSGRWASRGGG 290

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
              IP      + +R + ++ P    + AD  Q+E RILA ++   P       + D++ 
Sbjct: 291 ALQIP------KALRTSVVADPGHTFVIADAGQLEPRILAAMSG-DPRMTAAAGTDDLYA 343

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           +VAAE+FG +        R  AK     ++YG +             EA   +     RF
Sbjct: 344 LVAAEVFGGD--------RAKAKIAILGVLYGATA-----------GEARALLTLLRKRF 384

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGR 865
           P   + +E       +   V +  GR
Sbjct: 385 PVAVQLVEDAARAGERGEVVHSWLGR 410


>gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
 gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
          Length = 644

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 164/425 (38%), Gaps = 95/425 (22%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+++D +L+    A   + +    E+   L+G + N +S  QL + L  +L +      K
Sbjct: 199 GVKVDMELVDAALACNDEIVEEATESSKILTGLE-NPNSTMQLKEWLTARLGYDLETMRK 257

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTFY 703
                  AQD+          ++ +L+ RQ+   S IK   A  + N +     R+H   
Sbjct: 258 DDVSNLLAQDIPSD-------VRKVLQNRQVLGNSSIKKYLA--MKNAVCS-DGRIHGML 307

Query: 704 SLASTM-TGRLASLEPNLQNIP-------------IKTD---------------LGQKIR 734
                M +GR A     LQN+P             +K+                + Q IR
Sbjct: 308 QFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEMLDLLYGNPGDVIKQLIR 367

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-- 792
            A ++    + I AD+S IE R++A +A       VF    DI+   A+ +F V +EK  
Sbjct: 368 TALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIYCASASSMFHVPVEKHG 427

Query: 793 VSPQMRRHAKTINFSIIY--GISPFR-LATQLRIPRSEAADYIKRYFHRFPGIHEY---- 845
           V+  +R+  K    ++ Y  G+   + + ++  IP  E    I+ +    P I ++    
Sbjct: 428 VNGHLRQKGKVAELALGYGGGVGAMKAMDSKGEIPEKELPGIIEAWRQASPRITKFWKDA 487

Query: 846 ----------------IEKTKNFVRQNG--YVETIFGRR-----------------IHYD 870
                           I+    F +  G  ++E   GRR                 I YD
Sbjct: 488 DSAAKQVVRTGEPVRIIQGNIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEYD 547

Query: 871 EINSPKSSIRNINERAA--INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
            ++  K++   +       +   +Q  A D    +M+ + K+        K++  IHDE+
Sbjct: 548 GMDQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKA------GYKIVAHIHDEV 601

Query: 929 VFEVP 933
           V E P
Sbjct: 602 VIEAP 606


>gi|300742225|ref|ZP_07072246.1| putative DNA polymerase I [Rothia dentocariosa M567]
 gi|300381410|gb|EFJ77972.1| putative DNA polymerase I [Rothia dentocariosa M567]
          Length = 579

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 164/430 (38%), Gaps = 61/430 (14%)

Query: 579 VVSQMEITGIQIDQDL----LKQV------SAEISKNLLSLEENI-YDLSGEKFNLSSPK 627
           V +++E  GI  D  +    L ++        E    L+ L E I  DL     N  SP+
Sbjct: 175 VAAEIEYYGIPFDTAVHDAHLTEILGPRPPEGEHPAKLMELAEQIRADLFAPHLNPDSPQ 234

Query: 628 QLGDILFTK-LKFPSGAKTKTGQW-KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           +L   L    +  PS        W + TA   E+      PI++    +R  +    ++A
Sbjct: 235 ELLRALHAAGVNVPSTRSYVLKGWAEETATQRERRWVLIEPILRYKKLYRIFTANGWSWA 294

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           DS       R  R      +    TGR  +       +P       +IR A ++P  +  
Sbjct: 295 DSW-----VRNGRFRPHLEVGGAATGRWGASGGGALQLP------AEIRSAILAPEGEVF 343

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           + +D SQIE RILA ++    L      + D++  + AE+    +E V+   R  AK   
Sbjct: 344 LVSDGSQIEPRILAALSHDEALASAGRGT-DMYTGI-AEL--ARLEGVALTERAQAKVGL 399

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
            +I+YG               E    +      FP   E+ E+        G V T  GR
Sbjct: 400 LAIMYGGR-----------SGEIGALLPHVAKLFPRAMEFTERAARIGEVGGQVTTFLGR 448

Query: 866 ----------RIHYDEINSPKSSIRNIN-----ERAAINAPIQGSAADITRRAMISVHKS 910
                     R   D  ++P +  R ++      R   N  +QG+AA+     M  V   
Sbjct: 449 TSPTPDERFKRTVADR-STPAAESRAVSLSRSYGRMTRNFVVQGTAAEWALCWMGRVRSR 507

Query: 911 LEDH-----KLATKMLLQIHDELVFEVPEEEITTASQIIVHS-MEKACLPKINLRVPLKV 964
           L         + TK++  +HDEL+   P+ E     +I+  S  E A L    + V   V
Sbjct: 508 LLTETVFGMPMRTKIVYFLHDELLLCGPKLEAERVERILRESAAEAARLLFGTVPVEFPV 567

Query: 965 NIKVSNNWQE 974
           ++ V+ N+ E
Sbjct: 568 SVTVTTNYAE 577


>gi|311112135|ref|YP_003983357.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
 gi|310943629|gb|ADP39923.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
          Length = 650

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 170/433 (39%), Gaps = 67/433 (15%)

Query: 579 VVSQMEITGIQIDQ--------DLL--KQVSAEISKNLLSLEENI-YDLSGEKFNLSSPK 627
           V +++E  GI  D         ++L  +    E    L+ L E I  DL     N  SP+
Sbjct: 246 VAAEIEYYGIPFDTAAHDAHLTEILGPRPPEGEHPAKLMELAEQIRADLFAPHLNPDSPQ 305

Query: 628 QLGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS---- 682
           +L   L    +  PS   T++   K  A++          +I+ IL +++L +I +    
Sbjct: 306 ELLRALHAAGVNVPS---TRSYVLKGWAEETATQRERRWALIEPILRYKKLYRIFTANGW 362

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           ++ADS       R  R      +    TGR  +       +P       +IR A ++P  
Sbjct: 363 SWADSW-----VRNGRFRPHLEVGGAATGRWGASGGGALQLP------AEIRSAILAPEG 411

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           +  + +D SQIE RILA ++    L      + D++  + AE+    +E V+   R  AK
Sbjct: 412 EVFLVSDGSQIEPRILAALSHDEALASAGRGT-DMYAGI-AEL--ARLEGVALTERAQAK 467

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
               +I+YG               E    +      FP   E+ E+        G V T 
Sbjct: 468 VGLLAIMYGGR-----------SGEIGALLPHVAKLFPRAMEFTERAARIGEVGGQVTTF 516

Query: 863 FGR----------RIHYDEINSPKSSIRNIN-----ERAAINAPIQGSAADITRRAMISV 907
            GR          R   D  ++P +  R ++      R   N  +QG+AA+     M  V
Sbjct: 517 LGRTSPAPDERFKRTVADR-STPAAESRAVSLSRSYGRMTRNFVVQGTAAEWALCWMGRV 575

Query: 908 HKSLEDH-----KLATKMLLQIHDELVFEVPEEEITTASQIIVHS-MEKACLPKINLRVP 961
              L         + TK++  +HDEL+   P+ E     +I+  S  E A L    + V 
Sbjct: 576 RSRLLTETVFGMPMRTKIVYFLHDELLLCGPKLEAERVERILRESAAEAARLLFGTVPVE 635

Query: 962 LKVNIKVSNNWQE 974
             V++ V+ N+ E
Sbjct: 636 FPVSVTVTTNYAE 648


>gi|262342261|gb|ACY54641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 30/215 (13%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N     
Sbjct: 1   NLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYAD 50

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DYI 832
            ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     +  
Sbjct: 51  ILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIR 109

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  +
Sbjct: 110 QAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYCL 156

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 QGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 191


>gi|262212201|gb|ACY35717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI    + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTLGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK---- 833
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++      P S  A   K    
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSHDKPLSSQAAKKKGKEI 109

Query: 834 --RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472355|gb|ACQ72692.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R  F + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALFTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   K+   ++GY++   GR    D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRCCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|32442313|gb|AAP82227.1| DNA polymerase [Podovirus GOM]
          Length = 404

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 32/195 (16%)

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWR----QLSKIKSTYADSLPNHINKRTQRV 699
           +T +G+ K     L++I   +      ILE +    QLS+ K+ +   L   +N +    
Sbjct: 194 RTASGRAKIDDSVLKEIGSPEALKFARILELQKHLGQLSEGKNAW---LQQEVNGKIH-- 248

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRIL 758
           H+   + +T TGR+A L PNL   P   +      RA   P T +L + AD S +ELR L
Sbjct: 249 HS--CILNTNTGRMAHLRPNLAQAPSAPEY-----RALFHPGTNRLQVGADASGLELRCL 301

Query: 759 AHIAKITPL-YQVFENSL---DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           AH   + P     F  S+   DIH  +AA I+G +        R+  K + + +IYG   
Sbjct: 302 AHY--LAPFDGGKFAESVVHGDIHTDLAA-IYGTD--------RKSGKGVTYCLIYGGGD 350

Query: 815 FRLATQLRIPRSEAA 829
            +L       +++AA
Sbjct: 351 TKLGLTAGASKAQAA 365


>gi|68299732|ref|YP_249581.1| DNA polymerase [Vibriophage VP4]
 gi|66473271|gb|AAY46280.1| DNA polymerase [Vibriophage VP4]
          Length = 678

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 117/308 (37%), Gaps = 53/308 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF-----ISPPTKK---LISAD 749
           +H   +    +TGR     PNL  +P I+   G + R  F     +   T K    +  D
Sbjct: 386 IHGQVNPNGAVTGRATHSYPNLAQVPSIRKYKGVECRSLFGAEHHLDYHTGKPWIQVGVD 445

Query: 750 YSQIELRILAH-IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            S +ELR L H +AK       F++   I+ ++  +I   N        R +AKT  +  
Sbjct: 446 ASGLELRCLGHFMAK-------FDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGF 498

Query: 809 IYGISPFRLATQL----RIPRSEAADYIKRYFHRFPGIH--------------EYIEKTK 850
           +YG    ++   +       +   A+ IK++    P I               +++  T+
Sbjct: 499 LYGAGAQKIGEIVGKFGEEGKKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQ 558

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
               +  +++ + GR++H   + SP          AA+N  +Q + A I ++ ++   K 
Sbjct: 559 QIKWKRKWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKKWIVEWDKG 606

Query: 911 LE----DHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           +      H        +  +HDE       +EI   +  I     +      N R PL  
Sbjct: 607 MRAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDT 666

Query: 965 NIKVSNNW 972
             K+  NW
Sbjct: 667 EGKIGANW 674


>gi|148807560|gb|ABR13582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIANEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|148807558|gb|ABR13581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRLLAH 180


>gi|312436366|gb|ADQ83175.1| DNA polymerase [Yersinia phage Yep-phi]
          Length = 704

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 115/307 (37%), Gaps = 53/307 (17%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS--------PPTKKLISA 748
           R+H   +    +TGR     PN+  +P I+   G+  R AF +        P     +  
Sbjct: 415 RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPCRAAFGAEHNLKDGKPDPWIQVGV 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR L H      +Y+  E    +  ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLGHF-----MYRYDEGEY-VETILTGDIHTKNQMAAGLPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +     +    IK +  + P I               +++   +    
Sbjct: 529 LYGAGAAKIGQIVGGTAEDGKRLIKNFLEQTPAIAALREAITGTLVKDSKWVGGEQKVTW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED- 913
           +  +V  + GR++H   + SP          AA+N  +Q + A I +  ++   + L + 
Sbjct: 589 KRRWVRGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIVKTEEMLLEM 636

Query: 914 ---HKLATKMLLQ--IHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVN 965
              H       L   IHDE       EEI   +++++   ++A        N R  L   
Sbjct: 637 GYKHGWDGDFCLMGWIHDEQQLACRTEEI---AKVVIEVSQQAMHWVGDHFNFRCQLDTE 693

Query: 966 IKVSNNW 972
            K+  NW
Sbjct: 694 GKMGPNW 700


>gi|148807497|gb|ABR13553.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807509|gb|ABR13558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807517|gb|ABR13562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807522|gb|ABR13564.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807550|gb|ABR13577.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807573|gb|ABR13587.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807587|gb|ABR13594.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807591|gb|ABR13595.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807593|gb|ABR13596.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807595|gb|ABR13597.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|148807583|gb|ABR13592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGATIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|229472203|gb|ACQ72616.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIP-----RSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++P     + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLPSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|148807597|gb|ABR13598.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIAEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|47934798|gb|AAT39837.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGDILF-TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S  Q+ + L    +KF    KT+ G      + LE I   D P  K I E+  L 
Sbjct: 30  EFNVGSRXQIAERLVGVGVKFKQ--KTEKGAVVVNXKVLEGI---DIPEAKTIYEYLMLQ 84

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 85  K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVXAPYGKECRSFW 141

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 142 CVPEGHKLIGCDASGLELRMLAH 164


>gi|47934740|gb|AAT39808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934806|gb|AAT39841.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + L    +KF    +T+ G      + LE I   D P  K I E+  L 
Sbjct: 56  EFNVGSRKQIAERLEGVGVKFK--LQTEKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQ 110

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PN+  +P +    G++ R  +
Sbjct: 111 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNMAQVPSVSAPYGRECRSFW 167

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 168 CVPEGHKLIGCDASGLELRMLAH 190


>gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 646

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 112/260 (43%), Gaps = 45/260 (17%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+++D +L+ Q  A  +++   L   I D++ E  N +S +Q+   L       +G +T 
Sbjct: 208 GVRLDMELVSQAIAMDTRSREELTAAIKDMT-ELENPNSVQQMKQWLSD-----NGIETD 261

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTFY 703
           +   K  A+ L+  +  DN  + ++L  RQ    S ++   A       + R + +  FY
Sbjct: 262 SLDKKAVAELLK--DAPDN--LADVLTLRQQLAKSSVRKYQAMEKTVCSDGRARGMFQFY 317

Query: 704 SLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRR 735
              +  TGR +     LQN+P                            +   L Q IR 
Sbjct: 318 --GANRTGRFSGRNIQLQNLPQNHLPDLSEARSLVRSGDFDGVELLYEDVPDTLSQLIRT 375

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--V 793
           AFI         AD+S IE R++A  A  +   QVFE   DI+   A+++F V +EK  +
Sbjct: 376 AFIPRENALFYVADFSAIEARVIAWFAGESWRQQVFEKGGDIYCASASQMFKVPVEKHGI 435

Query: 794 SPQMRRHAKTINFSIIYGIS 813
           +  +R+  K    ++ YG S
Sbjct: 436 NGHLRQKGKIAELALGYGGS 455


>gi|147771801|emb|CAN71326.1| hypothetical protein VITISV_007135 [Vitis vinifera]
          Length = 119

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 10/119 (8%)

Query: 187 GDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINASRIKQKKRR--ENIL-EYAET 239
           GD +D +PGI    PG G KTA  LL+++G+LEN L+NA+ ++   R+  +N L +YA+ 
Sbjct: 2   GDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLEN-LLNAAAVRTVGRQYAQNALTKYADF 60

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI--SFLKALEFTKLINRVATTYDCDA 296
            R + +++ LR DV + +  E L   D     ++  +F K L  T+ +    T++  D 
Sbjct: 61  LRRNYEILSLRRDVDVQLEEEWLFDRDSRNDSVVLSNFFKLLGETQKLTNQNTSHSSDG 119


>gi|32442293|gb|AAP82217.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 12/123 (9%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           R+H   +    +TGR+   +PNL  +P I +  G++ R  +I P  K L+  D S +ELR
Sbjct: 242 RIHGRVNSCGAVTGRMTHSKPNLAQVPAIYSPYGEECRELWIVPEGKCLVGIDASGLELR 301

Query: 757 ILAHIAKITPLYQVFENSLD-IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           +LAH          + N  D    ++  +I   N      Q R  AKT  ++ +YG    
Sbjct: 302 MLAH----------YMNDKDYTDEILNGDIHTANQLAAGLQSRDQAKTFIYAFLYGGGDG 351

Query: 816 RLA 818
           ++ 
Sbjct: 352 KIG 354


>gi|262342229|gb|ACY54625.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 30/194 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMI 905
           +QG++A + +R M+
Sbjct: 157 LQGNSAILAKRWMV 170


>gi|229472361|gb|ACQ72695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKIT--PLYQVFENS 774
           PNL  +P  +DL    R    + P   ++ AD + IELR+LAH +A+        V  N 
Sbjct: 1   PNLAQVP--SDLA--FRALLTASPGYAMVGADLAGIELRMLAHYLARYDGGRYGDVLLNG 56

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
            DIH+  A +I G++        RR  KT+ ++ +YG    ++        SE     K 
Sbjct: 57  -DIHQENADKI-GIS--------RRLVKTVTYAFLYGAGDEKIGLSYDPQLSEKDATTKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y    PG+ + +   ++   ++GY++   GRR   D                A+
Sbjct: 107 KEIRQAYMDAIPGLEKLVTAVRSKA-ESGYIQLCDGRRCPVD------------GSHKAL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 154 NYLLQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|148807569|gb|ABR13585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           +FN+ S KQ+ + L    +KF    +T+ G      + LE I   D P  K I E+  L 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFK--LQTEKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQ 100

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +
Sbjct: 101 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFW 157

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 158 CVPEGHKLIGCDASGLELRMLAH 180


>gi|220913904|ref|YP_002489213.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
 gi|219860782|gb|ACL41124.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
          Length = 590

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 34/237 (14%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +P+I  +LE+++LS++ +    S  +       R    Y +   ++GR AS       IP
Sbjct: 282 HPVIGPLLEYKKLSRLHTANGWSWLDAWVA-GGRFRPEYVVGGVVSGRWASRGGGALQIP 340

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                 +++R A  + P  KLI AD SQ+E R+L  +A+ + + +   +  D++  +AA+
Sbjct: 341 ------RQVRGAVHADPGYKLIVADASQLEPRVLVALARDSVMAEAARDQ-DLYAGIAAK 393

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
            FG +        R  AK      +YG +             E+   + +    +P   +
Sbjct: 394 GFGGD--------RAKAKVALLGAMYGAT-----------SGESGRLMPQLARTYPRAVD 434

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           ++E+        G V T  GR       +SP  S R    + +  A  Q  A  I R
Sbjct: 435 FVEQAARAGEAGGTVTTRLGR-------SSPPPSERWYQSQRSATAEEQRRAESIAR 484


>gi|262212069|gb|ACY35651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 30/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKR-- 834
             ++  +I  VN +K+    R   KT+ ++ +YG    ++     ++  S+AA+   +  
Sbjct: 51  DILLNGDIHQVNADKIGIS-RELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 835 ---YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           +QG++A + +R M+    +L+   L    L  IHD
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHD 191


>gi|262342097|gb|ACY54559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    K R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----KFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|290958457|ref|YP_003489639.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260647983|emb|CBG71088.1| putative DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 571

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 119/301 (39%), Gaps = 56/301 (18%)

Query: 579 VVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYDLSGEKFNLSSPKQ 628
           V ++M   G+    D+ ++V  E+           + L  L E + +  G +     P  
Sbjct: 169 VAAEMNRAGLPWRPDVHREVLRELLGERYAGGGEPRRLAELAEEVSNAFGRRVRPDLPAD 228

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS- 687
           +      K    +G + K+    T   ++E +   D+P +K +LE+++L +I   +  S 
Sbjct: 229 V-----VKAFARAGVRVKS----TRRWEIESV---DHPAVKPLLEYKKLYRIWVAHGWSW 276

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L + +  R  R    +    T+TGR  +       IP      + IRRA ++ P  +L+ 
Sbjct: 277 LQDWV--RDGRFRPEFLAHGTVTGRWVTNGGGALQIP------KVIRRACVADPGWRLVV 328

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD  Q+E R+LA I++   L  V     D+++ V+   F  +        R  AK     
Sbjct: 329 ADADQMEPRVLAAISRDPGLMDVAGRPGDLYQAVSDRAFSGD--------REQAKLAVLG 380

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            +YG +              + D +K       RFP    Y++       +   V T  G
Sbjct: 381 AVYGQT--------------SGDGLKNLAALRRRFPHAVRYVDDAARAGEEGRLVRTWLG 426

Query: 865 R 865
           R
Sbjct: 427 R 427


>gi|332800714|emb|CBY88554.1| hypothetical protein [Pantoea phage LIMEzero]
          Length = 814

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 116/322 (36%), Gaps = 53/322 (16%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISADYSQIELR 756
           VH   ++ ST T RL+S  PN QN+P K     K+++ F S      K+  ADYS +E+ 
Sbjct: 463 VHHSINMTSTETTRLSSSRPNSQNLPRKGT--SKVKQMFTSRFGGEGKICEADYSALEVV 520

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV---------------SPQMRRHA 801
                 K   L Q   +  D+H M  ++    + E V                 +MR   
Sbjct: 521 GQCGFTKDKNLTQALLDGTDMHCMRLSQQLNEDYESVLLKAKKDESHPDHKRYDEMRTAI 580

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE-----------KTK 850
           K   FS  YG +   +A        EA  +I      FP + ++ +           K+ 
Sbjct: 581 KPKAFSYQYGATAMGIAYSTGCSVEEAQAFIDSEKALFPDVEKWYDEVITPIVERNGKSN 640

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIR-----NINERAAI---------NAPIQGSA 896
            F  Q+     +   R H+        S R     + + RAA+         N PIQG  
Sbjct: 641 RFKEQDENGRWVSYCRGHWQSPGGTCYSFRQHEKWDRDARAAVMMYKPTQMRNYPIQGET 700

Query: 897 ADITRRAMISVHKSLEDHKLATKMLL---QIHDELVF----EVPEEEITTASQII--VHS 947
           A   +     + + L  +       +   Q+HD   F    + P E       I+  +  
Sbjct: 701 AFWVQGIGGLLFRWLLANDFFDGKAVPINQVHDAFYFDCAPDCPHEFFVGLKAIMECIPE 760

Query: 948 MEKACLPKINLRVPLKVNIKVS 969
                 P+ NL VP    ++V 
Sbjct: 761 YYNHVWPEYNLHVPFPAEVEVG 782


>gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 646

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 109/269 (40%), Gaps = 54/269 (20%)

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR   +E   ++ P    L + IR AF++ P  + I +DYS IE R+LA +A      QV
Sbjct: 350 GRYEEVELFYESTP--NVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQV 407

Query: 771 FENSLDIHRMVAAEIFGVNIE---KVSPQMRRHAKTINFSIIYGISPFRL----ATQLRI 823
           FE    I+   A+ +F V IE   K SP +R+  K    ++ YG +   L    A ++ +
Sbjct: 408 FETHGKIYEASASAMFHVAIEEITKTSP-LRQKGKISELALGYGGAVGALTSMGALKMGL 466

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTK------------------NFVRQNG--YVETIF 863
              E    +  +    P I  +                       +F  ++G  +V    
Sbjct: 467 TEEELPGLVSTWRSANPHITAFWWAVDEAAVTAVRDKKPSKVGRVSFEYKSGILFVTLPS 526

Query: 864 GRRIHY-------DEINSPKSSIRNINE-----RAAINAP------IQGSAADITRRAMI 905
           GR++ Y       ++      +   I E     R     P      +Q ++ DI   AM+
Sbjct: 527 GRKLSYVKPRMMLNKFGREGLTYEGIGESKKWMRLETYGPKLVENIVQAASRDILAEAML 586

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPE 934
            + K   D      ++  +HDE+V EVP+
Sbjct: 587 RLEKEGFD------IVCHVHDEVVLEVPD 609


>gi|262212121|gb|ACY35677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212127|gb|ACY35680.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + +  AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMAGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEATDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINRNNLKLLNLCCSQLAFVHDE 192


>gi|239918065|ref|YP_002957623.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|281415754|ref|ZP_06247496.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|239839272|gb|ACS31069.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
          Length = 578

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 98/268 (36%), Gaps = 35/268 (13%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R H  Y +   +TGR A+       +P        +R A  + P   L  AD SQ+E RI
Sbjct: 306 RFHAAYLVGGVVTGRWAAHGGGAMQVP------AGVRDAVRADPGWTLTVADASQVEPRI 359

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LA +A    L +    + D++R VA +             R  AK      +YG +    
Sbjct: 360 LAAMAADEVLARA-GTTPDLYREVAEQGRAAGTALAD---RGRAKIALLGAMYGSTTGDS 415

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR----------- 866
           A  +         +++R + R  G+   +E+        G V T  GR            
Sbjct: 416 AALM--------PHLRRLYPRAIGL---LERAATVGEGGGQVSTWLGRWSPAPGRKWQES 464

Query: 867 ---IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
              +      S     R    R   N  +QG+AA+     M  + + L    + T+++  
Sbjct: 465 VSDVGTQAAESAARRRRRSQGRFTRNFVVQGTAAEWALCWMGEIRRRLRSAGMRTELVFF 524

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKA 951
           +HDE+V   P  E      ++  S   A
Sbjct: 525 VHDEVVLHGPTTEAEAVRTVVAESASAA 552


>gi|26989000|ref|NP_744425.1| phage exonuclease, putative [Pseudomonas putida KT2440]
 gi|24983821|gb|AAN67889.1|AE016421_1 phage exonuclease, putative [Pseudomonas putida KT2440]
          Length = 199

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 82/201 (40%), Gaps = 23/201 (11%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           ++QN   ++ A    ++F    V +R  + P YK NR K  + LL +  L   A + F  
Sbjct: 1   MVQNLIDKTGADEALLVFS-DKVNWRKTVLPTYKHNRSKTVQPLL-RSHLTAWAQETF-- 56

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP----TTCLYDTVKEEKI 163
           P+I     E DD+       A K G  + + S DKD   +        T  +  V EE+ 
Sbjct: 57  PSISKPTLEGDDVCGILLTRARKFGEEIVVASIDKDFKTVPGHHYNFNTDTFFEVTEEEA 116

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D  H+              Q L GD+ D   G PGIG   A  LL +    E ++  A+ 
Sbjct: 117 DYWHL-------------YQTLMGDTTDGYSGCPGIGPVAAKRLLDKSPTWETVV--AAF 161

Query: 224 IKQKKRRENILEYAETARLSR 244
            K     E  L  A  AR+ R
Sbjct: 162 EKAGLCEEEALVQARVARILR 182


>gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 352

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 37/166 (22%)

Query: 697 QRVHT---FYSLASTMTGRLASLEPNLQNIP----------------------------I 725
           QR H    FY   +  TGR A     +QN+P                            +
Sbjct: 46  QRAHGLLQFY--GANRTGRWAGRLVQVQNLPRNYLPDLAQARSLVRDGNGETLEMLYSSV 103

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
              L Q IR AFI     + I ADYS IE R+LA +A        F+N  D++   A+ +
Sbjct: 104 PDTLSQLIRTAFIPSKGHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATASAM 163

Query: 786 FGVNIEK--VSPQMRRHAKTINFSIIY--GISPFRLATQLRIPRSE 827
           FGV +EK  V+ ++R+  K    +  Y   +   +    L++  SE
Sbjct: 164 FGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLSE 209


>gi|262342133|gb|ACY54577.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F   P + ++ AD + IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDS----RFRELFQPSPGQLMVGADLAGIELRMLSH------FLARYDQGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSTAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + ++  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLDAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +++   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQHNVKQLDLCCSQLAFIHDE 192


>gi|84662633|ref|YP_453598.1| putative DNA directed DNA polymerase [Xanthomonas phage OP1]
 gi|84570682|dbj|BAE72745.1| putative DNA directed DNA polymerase [Xanthomonas oryzae phage OP1]
          Length = 793

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 134/329 (40%), Gaps = 65/329 (19%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRI 757
           VH    + +T+TGRL+S  PNLQN+P K D  + +++ F+S  P   ++ +D++ +E+ +
Sbjct: 441 VHHQLQMVNTVTGRLSSALPNLQNLP-KGDKSE-VKKLFVSRFPGGFIVQSDFTALEIYV 498

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM--------------RRHAKT 803
             +++  + L       LD+H    A+  GV+ + V  +               R  AK 
Sbjct: 499 QGNLSGDSALIADLRAGLDMHCKRLAQKEGVSYDYVFERAKDKKHIDYIVWNSKRSKAKG 558

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN------- 856
            +F   YG     +A    +   E  + I+     +PG+ EY ++T   + +N       
Sbjct: 559 FSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGVPEYNKRTMKELERNLIPSKMY 618

Query: 857 ---------------GYVETIFGRRIHYDEINSPKSSIRNINERAAI----------NAP 891
                           Y  T  G+R    +  +PK     + ER  +          N P
Sbjct: 619 IASSYEVGVSLNLGKSYFRTPDGKRYTMYQTQAPKW----LWEREGVQLTFSSTTTKNYP 674

Query: 892 IQGSAADITRRAM-ISVHKSLEDHKLATKMLL--QIHDELVFEVPEEEITTASQIIVHS- 947
           +QG+  +  + AM + V +         + L+   +HD    +    E+   S  ++H+ 
Sbjct: 675 VQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYID-SAPEVAKESMALLHAC 733

Query: 948 -------MEKACLPKINLRVPLKVNIKVS 969
                  ME     K+++ VP + +I  S
Sbjct: 734 MEEASRYMEHQFSWKLHIDVPSETSIGTS 762


>gi|302559315|ref|ZP_07311657.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302476933|gb|EFL40026.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 563

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 156/408 (38%), Gaps = 93/408 (22%)

Query: 598 VSAEISKNLLSLEENIY-----DLSGEKF-NLSSPKQLGDIL------FTKLKFP----- 640
           V+AE+++  L    +++     DL GE++     P++L ++       F +   P     
Sbjct: 169 VAAEMNRTGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVSAAFGRRVRPDLPAD 228

Query: 641 -------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHI 692
                  +G K  +    T   +LE +   D+P +  ++E+++L +I   +  S L + +
Sbjct: 229 VVKAFAQAGVKVAS----TRRWELESV---DHPAVAPLIEYKKLYRIWVAHGWSWLQDWV 281

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
             R  R    +    T+TGR  +       IP      + IRRA ++ P  +L+ AD  Q
Sbjct: 282 --RDGRFRPEFLAGGTVTGRWVTNGGGALQIP------KVIRRAAVADPGWRLVVADADQ 333

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +E R+LA I++   L +V     D+++ V+   F  +        R  AK      +YG 
Sbjct: 334 MEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAFSGD--------RAQAKLAVLGAVYGQ 385

Query: 813 SPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFGRRI-- 867
           +              + D +K       RFP    Y++       +   V T  GR    
Sbjct: 386 T--------------SGDGLKNLAALRRRFPRAVAYVDDAARAGEEGRLVRTWLGRTCPP 431

Query: 868 -------HYDEINSP-----------------KSSIRNINERAAINAPIQGSAADITRRA 903
                    +E   P                  S+      R A N  +QGSAAD     
Sbjct: 432 AARTGDDAAEEAGIPVADEGTPDGDRAWVPGYASTDARARGRFARNFVVQGSAADWA--L 489

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           ++          +A +++   HDE++   PEEE  T    I  + E A
Sbjct: 490 LLLAALRRTLAGMAAELVFFQHDEVIVHCPEEEAETVVAAIREAAELA 537


>gi|255601377|ref|XP_002537664.1| DNA polymerase I, putative [Ricinus communis]
 gi|223515546|gb|EEF24720.1| DNA polymerase I, putative [Ricinus communis]
          Length = 71

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI+V   LE + L T+M++Q+HDELV EVP++E+    + +   M+        L+VPL
Sbjct: 2   AMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEVVREKLPELMKNVA----ELKVPL 57

Query: 963 KVNIKVSNNWQE 974
              + +  NW E
Sbjct: 58  LAEVGIGKNWDE 69


>gi|109521836|ref|YP_655732.1| gp52 [Mycobacterium phage Qyrzula]
 gi|91980780|gb|ABE67498.1| gp52 [Mycobacterium phage Qyrzula]
          Length = 600

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 101/238 (42%), Gaps = 32/238 (13%)

Query: 696 TQRVHTFYS-LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           T R H   + L ++ TGR++   P LQ  P       K  R  I    + L S D++QIE
Sbjct: 350 TGRCHPQVAILGASATGRMSYGSPELQQFP-------KDARPIIVDDGQGLTSVDWAQIE 402

Query: 755 LRILAHIAKITP-LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
              +A +A     L   FE   D++  +     G++        R  AK I  + +YG  
Sbjct: 403 PVTMALMAGDREFLAPFFEKDADLYEPI-MRACGID--------RPMAKVILLATMYGQG 453

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
              +A ++      AA   ++     P   +++ K ++    +G + T  GR +  D+  
Sbjct: 454 ARSMARRIGHTEESAAQIRRQMLAAMPASRDFMAKVESIAITHGRIVTGGGRILPVDQQG 513

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           S +          A+N   QGSA D+    ++     L++  L+  + L +HDELV +
Sbjct: 514 SYR----------AVNYICQGSAYDVLAHTIV----RLDEVGLSGHVQLAMHDELVVD 557


>gi|229472369|gb|ACQ72699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 34/217 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +D   + R  F + P+  ++ AD + IELR+LAH +A+       ++    
Sbjct: 1   PNLAQVP--SD--DQFRELFQASPSMVMVGADLAGIELRMLAHYLAR-------YDEGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA----TQLRIPRSEAADYI 832
              ++  +I   N +K+    RR  KT+ ++ +YG    ++      QL   ++ A    
Sbjct: 50  ADILLNGDIHQENADKIGIS-RRQVKTVTYAFLYGAGDNKIGLSYDPQLSSKQATAKGEE 108

Query: 833 KR--YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            R  Y    PG+ + +   K+  + +G +  I GR I     +SP           A+N 
Sbjct: 109 IRAAYMDAVPGLEKLVTAVKHKAQSSGKIRAIDGRSI---SCSSPHK---------ALNM 156

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +Q SA  I +R M  V+++L      T  L  IHDE
Sbjct: 157 LLQSSAGVIAKRWMQIVNENLPPF---THQLAFIHDE 190


>gi|293411939|ref|ZP_06654664.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469494|gb|EFF11983.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 314

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 111/242 (45%), Gaps = 28/242 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N+LF VDG+S  Y    +  L    H+G + V A  GF       ++N R+ +   H   
Sbjct: 2   NYLF-VDGNSLGYYHQQSDKL----HNGEMEVQAAFGF-------VKNVRRYASILHARP 49

Query: 64  IFDYPAVT-FRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFE 116
           +  +   +  R + YPDYKANR   P+M         Q P +     A G+  I  +  E
Sbjct: 50  MILWDGFSDKRRDFYPDYKANRDDDPDMKKMKEGFAVQKPYILKMMTALGVNQIIAKDAE 109

Query: 117 ADDIIATY-TYIAEKEGFA-VTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKK 171
           ADD+     + +A +     + +++ D D +QLV        L +  K ++++ E   + 
Sbjct: 110 ADDLAGLLVSRMAPQPTVEHIYLLTGDSDWLQLVRENVSWVSLREDAKNKQVNFEQFAEL 169

Query: 172 WGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKK 228
            G   P   +  +AL GD+ DNI G+ GIG   A  LL E+G++  ++  IN   I   K
Sbjct: 170 TGFATPRAFLEAKALQGDNSDNISGVGGIGAGGAKELLHEWGSVATMVRGINDGSIVVDK 229

Query: 229 RR 230
            R
Sbjct: 230 GR 231


>gi|291335762|gb|ADD95365.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C243]
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 23/147 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+H   S+ ST T R A  +PNL  +P      ++ R  F + P   ++ AD S IELR+
Sbjct: 67  RIHHHCSV-STNTFRCAHRKPNLAQVPAS----EEFRELFTASPGMVMVGADLSGIELRM 121

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH          ++       ++  +I  VN +K+    RR  KT+ ++ +YG    +L
Sbjct: 122 LAH------YLGRYDGGRYADILLNDDIHQVNADKIGI-TRRQVKTVTYAFLYGAGNEKL 174

Query: 818 AT-----------QLRIPRSEAADYIK 833
            T           + R PRSE   Y++
Sbjct: 175 GTSYDNSLQPKEAKKRDPRSEKLSYLQ 201


>gi|256824902|ref|YP_003148862.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
 gi|256688295|gb|ACV06097.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
          Length = 587

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 130/343 (37%), Gaps = 69/343 (20%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P+I+ +LE++ L+++ +    S   H   R  R    +     +TGR AS       +
Sbjct: 266 DHPVIEPLLEYKALARLYTANGWSWMRHW-VRDGRFRPDWVAGGVVTGRWASRGGGALQL 324

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      Q+IR A  + P  +L+ AD +Q+E R+LA ++         ++        A 
Sbjct: 325 P------QQIRSAVRAEPGWRLVVADAAQLEPRVLAAMS---------QDGAMARAAAAG 369

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           +++   +++     R HAK      +YG +             EA   + R    +P   
Sbjct: 370 DLYQGLVDEGVVDTRAHAKVAMLGAMYGAT-----------SGEAGALMARLRRAYPRAM 418

Query: 844 EYIEKTKNFVRQNGYVETIFGR---------RIHYDEINSPKSSIRNINERAAINAP--- 891
            +++       +   V T  GR         R        P +S     ER A +A    
Sbjct: 419 GWVDAAAAAGERGERVSTWLGRTSPAPPAFWREAQAAAQHPDAS--PAAERRAHSAAREW 476

Query: 892 --------IQGSAADITRRAMISVHKSLED-HKLAT----------------KMLLQIHD 926
                   +QG+AA+     M  + + L+D H                    +++  +HD
Sbjct: 477 GRFTRNFVVQGTAAEWALCWMGFLRRGLDDLHGPGGMREGDGGPGGLTASRPELVYFLHD 536

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACL---PKINLRVPLKVNI 966
           E++   PEE     ++ +  +  +A +   P   +  PL V +
Sbjct: 537 EVIVHAPEEFADEVAECVREAARRAGVLLFPGSPVDFPLSVAV 579


>gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
 gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
          Length = 663

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 35/179 (19%)

Query: 668 IKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +K +L  RQ L+K       ++ N +  + R + +  FY   +  +GR A     LQN+P
Sbjct: 296 LKTVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFY--GANRSGRWAGRLIQLQNLP 353

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       +   L Q IR AF+     + I +D+S IE R
Sbjct: 354 QNHMSDLEEARSLVKQGNYEAMNMLYDDVPDTLSQLIRTAFVPRKGMEFIVSDFSAIEAR 413

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           +L+H+A       VF +  DI+   A+++F V +EK  V+  +R+  K    ++ YG S
Sbjct: 414 VLSHLAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGS 472


>gi|262212369|gb|ACY35801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI-AKITPLYQVFENSLD 776
           PNL  +P       + R   +  P + +++AD S IELR+L+H  AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALSLPSPGQVMVAADLSGIELRMLSHFPAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  AGILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDGLDKLLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|262212217|gb|ACY35725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL   P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQGP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG+ A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNYAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212173|gb|ACY35703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  FI  P + ++ AD + IELR+L+H          ++N      ++  +I  VN 
Sbjct: 10  HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYADILLNGDIHQVNA 63

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++     ++  S+AA     +  + Y     G+ +
Sbjct: 64  DKIGIS-RKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 122

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +E  K    + G+++ + GR+I    ++SP           A+N  +QG++A + +R M
Sbjct: 123 LLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYCLQGNSAILAKRWM 169

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +    +L+   L    L  +HDE
Sbjct: 170 VINQNNLKLLNLCCSQLAFVHDE 192


>gi|312062862|gb|ADQ12724.1| DNA polymerase A domain-like protein [Acinetobacter phage phiAB1]
          Length = 494

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 99/249 (39%), Gaps = 42/249 (16%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISADYSQIELR 756
           +H   +  +T+TGRL+  +PNLQN+P   D   K++  F+S      +L+  DYS +E+ 
Sbjct: 162 IHHQLNNCATVTGRLSGSKPNLQNVP--RDGTSKVKEMFVSRFGSDGRLVECDYSALEVV 219

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--------------SPQMRRHAK 802
            LA I+    L Q   +  D+H    A   G + E V                Q+R   K
Sbjct: 220 ALASISGDKNLLQQLIDGTDMHCYRLAGALGEDYETVFEKCHDKSHPEHKKYKQLRTDIK 279

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK-TKNFVRQNGY--- 858
              F+  YG S   ++        EA  + +     FP    + E+  +  V QNG    
Sbjct: 280 PRAFANQYGASAMGISFSTGCSLEEAEQFKETERKLFPESSTFSERIVRPQVEQNGLSMP 339

Query: 859 --VETIFG-----RRIHYDEINSPKSSIR-------NINER------AAINAPIQGSAAD 898
              E + G     RR  +  ++    S R        + E+         N PIQG A+ 
Sbjct: 340 MESELVNGIWKHFRRGFFKALSGTCYSFRQFPKYVKGVGEKYDYKDTQIANYPIQGEASF 399

Query: 899 ITRRAMISV 907
           I + A   V
Sbjct: 400 IVQCACGRV 408


>gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
 gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
          Length = 662

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 35/181 (19%)

Query: 666 PIIKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           P ++N+LE RQ L+K       ++   +  + R + +  FY   +  TGR A     LQN
Sbjct: 293 PELQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFY--GANRTGRWAGRLIQLQN 350

Query: 723 IP----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +P                            +   L Q IR AFI     +   +D+S IE
Sbjct: 351 LPQNHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFSAIE 410

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGI 812
            R++A  A  T   +VF    DI+   A+++F V +EK  ++  +R+  K    ++ YG 
Sbjct: 411 ARVIAWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGG 470

Query: 813 S 813
           S
Sbjct: 471 S 471


>gi|229472397|gb|ACQ72713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEV 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|255521252|ref|ZP_05388489.1| 5'-3' exonuclease [Listeria monocytogenes FSL J1-175]
          Length = 83

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 2  QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
          +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  +    ++S  
Sbjct: 3  ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAI----RQSNP 58

Query: 59 SHFAVIFDYPAVTFRNEIYPDYKA 82
          +H  + +D  + TFRNE+Y  YKA
Sbjct: 59 THTLICWDMGSQTFRNELYDGYKA 82


>gi|260889283|ref|ZP_05900546.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860694|gb|EEX75194.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 168

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 447 KEILSY-LKKFFENEHFLKIGHNIKYDKLVLH--RYGISMRGFEDIMLMSYVLDSGRSSH 503
           KEI++Y +K++ +N      G+++      ++  R+GI    + DI+L  YVL +  S  
Sbjct: 5   KEIIAYNVKEYMKNGESEYFGYSVGGKTYGINNDRFGIKCTEYFDILLARYVLGT-ESLQ 63

Query: 504 DIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           +I  I          T +E  K  +       +SD  V E   + +  I +L  + R +L
Sbjct: 64  EIEEIILDEFGVEIATFEEQFKKERRKKDFSDVSDDVVCEFLSKRTFFIYKLETIFRNRL 123

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
             E+ L+++++L+  +I V++QME TGI+ID+    +   E+ +
Sbjct: 124 QNEQFLNIFDKLESRLIPVLAQMEETGIKIDKKYFSEFHNELEE 167


>gi|154334068|ref|XP_001563289.1| mitochondrial DNA polymerase I protein D [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060301|emb|CAM45712.1| putative mitochondrial DNA polymerase I protein D [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1578

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 121/294 (41%), Gaps = 56/294 (19%)

Query: 664  DNPIIKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            D+     ILE R L K+  TY +S      + + ++     +H       T TGRLAS  
Sbjct: 1204 DDKTASIILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRLASAN 1263

Query: 718  PNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSL 775
            PN QNIP K D    +R  FIS    K   I ADYSQ+E+  LA +A    + +    ++
Sbjct: 1264 PNCQNIP-KED-KSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRQNV 1321

Query: 776  DIH----RMVAAEIFGVNIEKVSP--------QMRRHAKTINFSIIYGISPFRLATQLRI 823
            D H     M+  ++   ++ + +         ++R+ AK  +F   YG     L+    +
Sbjct: 1322 DFHCKRVTMMRPDLKYTDVLQRAKKNKELEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGL 1381

Query: 824  PRSEAADYIKRYFHRFPGI-----------HEYIEKTKNFVRQ-------NGYVETIFGR 865
             + +    I++    + G+           + Y    +N VR         G    + G 
Sbjct: 1382 TQDQVRMLIEKENETYRGVEVFNKMVALSANSYDASLQNGVRNVRGHQFFKGMFPVLTGS 1441

Query: 866  RIHYDEINSPKSSIRNINERAAI------------NAPIQGSAADITRRAMISV 907
            R  + E + P+  +R   ER A+            N P+QG A +I  + M+ V
Sbjct: 1442 RYVFTESDVPEGMLR---ERDAVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGV 1491


>gi|229472177|gb|ACQ72603.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472327|gb|ACQ72678.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472427|gb|ACQ72728.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342091|gb|ACY54556.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342095|gb|ACY54558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342101|gb|ACY54561.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342121|gb|ACY54571.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342139|gb|ACY54580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|322829428|gb|EFZ32819.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 576

 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 120/284 (42%), Gaps = 57/284 (20%)

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS----------TMTGRLASLEP 718
           + ILE R + K+  TY +    + +  T  V   +S+ S          T TGRLAS  P
Sbjct: 207 ETILELRTMEKLIGTYYE----NTDDGTGMVSLVHSVDSCIHHELIHNKTNTGRLASANP 262

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLD 776
           N QNIP K D    +R  F+S   +K   I ADYSQ+E+  LA +A    + +   +++D
Sbjct: 263 NCQNIP-KED-KSPLREMFVSRYGEKGMCIEADYSQLEVVALAVLADDFQMLEDLRSNVD 320

Query: 777 IH-RMVA--------AEIFGVNIEKVSPQ---MRRHAKTINFSIIYGISPFRLATQLRIP 824
            H + VA         E+     +   P+   +R+ AK  +F   YG     ++    + 
Sbjct: 321 FHCKRVAMMRPDLQYTEVLLRAKKNKEPEFVKLRQQAKIFSFQRQYGAGVKMISQSTGLT 380

Query: 825 RSEAADYIKRYFHRFPGIHEY--------------IEKTKNFVRQNGYVETIF----GRR 866
           + +  + I++    + G+  +              I+     VR + + + +F    G R
Sbjct: 381 QDQVRNLIEKERETYRGVDAFNSMVALSANNFDASIQDGSRNVRGHQFFKGMFPVITGSR 440

Query: 867 IHYDEINSPKSSIR---------NINERAAINAPIQGSAADITR 901
             + E + P+  +R         N +     N P+QG A +I +
Sbjct: 441 YVFTESDVPEGIMREKSLSAKSTNFSPTHLKNYPVQGFAGEIVQ 484


>gi|262363933|gb|ACY60652.1| putative exonuclease [Yersinia pestis D106004]
          Length = 309

 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 21/174 (12%)

Query: 73  RNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY-T 125
           R + YP+YKANR   P+M         Q P +     A G+  +  +  EADD+     +
Sbjct: 55  RRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDLAGMLVS 114

Query: 126 YIAEKEGFA-VTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKKWGIP-PEKMV 180
            +A +     + +++ D D +QLV        L +  K ++++ E   +  G+P P   +
Sbjct: 115 RLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGLPTPRAFL 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYG---------NLENILINASRIK 225
             +AL GD+ DNI G+ GIG   A  LL E+G         N  +I+IN  R K
Sbjct: 175 EAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINKGRYK 228


>gi|148807528|gb|ABR13567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S K++ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKRIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K   E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKTTYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|262212189|gb|ACY35711.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342241|gb|ACY54631.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y      + + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDELDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|148807491|gb|ABR13550.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I     P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGIGI---PEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|291335899|gb|ADD95494.1| T7-like exonuclease [uncultured phage MedDCM-OCT-S08-C41]
          Length = 253

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 47/214 (21%)

Query: 49  LQNSRKE--SIASHFA------VIFDYPAVTFRNEIYPDYKANR--------PKIPEMLL 92
           + N R++  +I  HF       ++F   +V FR +I P YK +R         ++   L 
Sbjct: 39  MANVRRDLTNIKGHFTWDVPELILFFSDSVNFRKKILPSYKGHRNRKKPCGYKRVINELS 98

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q  ++R+ T             EADD +  Y            I+S DKD+ Q+     
Sbjct: 99  KQYEVIRMPT------------LEADDAMGIYATANPGN----VIVSPDKDMRQIPGRLF 142

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            + +TV    +  E    +W +       +Q + GD  D   G+PGIG K A  L  E+G
Sbjct: 143 NMTETV----MITEEEGYRWHL-------IQTMAGDQTDGYSGVPGIGIKRAVALFDEHG 191

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKL 246
              + ++ A + K     + ++     ARL++ L
Sbjct: 192 YTWDTVVQAFKDKDMTEEDALI----NARLAKIL 221


>gi|262342125|gb|ACY54573.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F   P + ++ AD + IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDS----RFRELFQPSPGQLMVGADLAGIELRMLSH------FLARYDQGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSTAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + ++  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLDAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +++   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQHNVKQLDLCCSQLAFVHDE 192


>gi|229472205|gb|ACQ72617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  GILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|148807554|gb|ABR13579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKGKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  + I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAEMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|291335495|gb|ADD95107.1| 5B protein [uncultured phage MedDCM-OCT-S04-C348]
          Length = 429

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 136/327 (41%), Gaps = 39/327 (11%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQL 677
           E FN  S +Q+ D L  K  +   +KT  G        LE++   +  P+ + +L  ++L
Sbjct: 49  EVFNPGSRQQIVDRLKKKYGWVPESKTDKGNPVLNDDVLEKLPYPEAKPLAEYMLLKKRL 108

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRA 736
            +IK    ++    +      +H        +TGR +   PN   IP   +  G++ R  
Sbjct: 109 GQIKD--GNNAWIKLVSPDGYIHGDMVTNGCITGRCSHRNPNTAQIPAGYSPYGKECRSL 166

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV---AAEIFGVNIEKV 793
           F +P    LI +D   +ELR LA        Y  F +  +  +MV   + +I   N EK 
Sbjct: 167 FHAPDDWILIGSDAKALELRCLAG-------YLAFWDGGEYGQMVTDDSVDIHTYNQEKF 219

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR--------YFHRFPGIHEY 845
             + R  +K + ++++YG   ++  T +  P  +  D +K+        +    P + E 
Sbjct: 220 GVETRDISKRLLYAVLYGAGFYKAGTIVD-PDEKDPDILKQLGKTAINSFMTGVPALQEL 278

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             K    +   GY+  +  R ++       +S  +      A+N  +Q   A + ++ +I
Sbjct: 279 KNKLAENLVARGYLLGLDRRPLYC------RSDFK------ALNVLLQSCGAILMKQVVI 326

Query: 906 SVHKSLEDHKLATKMLLQ----IHDEL 928
           ++HK+L    L           IHDE+
Sbjct: 327 NIHKNLVSAGLVYGQDWHQHGMIHDEI 353


>gi|229472195|gb|ACQ72612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYGKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342089|gb|ACY54555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +D   + R  F + P   +  AD S +ELR+LAH +AK            D
Sbjct: 1   PNLAQVP--SDY--RFRELFTASPGMVMCGADLSGVELRMLAHYLAKHDG-----GKYAD 51

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAAD 830
           I  ++  +I  VN +K+    R   KT+ ++ +YG    ++          +  +++  +
Sbjct: 52  I--LLNGDIHQVNADKIGIS-RSAVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKAKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y     G+ + +   K+   + G++  I  R+I    ++SP           A+N 
Sbjct: 109 IKQAYIEAIEGLDKLLADVKS-ASERGFIRAIDQRKI---LVDSPHK---------ALNF 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QGS+A + +R +   H++++   +    L  IHDE
Sbjct: 156 LLQGSSACLAKRWLTIAHENIKQLGIKAHQLAFIHDE 192


>gi|148807601|gb|ABR13600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  + I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAEMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|262212197|gb|ACY35715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ ++G    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLFGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ +  E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLPEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|294813269|ref|ZP_06771912.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|326441791|ref|ZP_08216525.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325868|gb|EFG07511.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 571

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 82/434 (18%), Positives = 161/434 (37%), Gaps = 88/434 (20%)

Query: 579 VVSQMEITGIQIDQDLLKQV----------SAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           V ++M   G+    D+ +QV               + L  L + +    G +     P+ 
Sbjct: 172 VAAEMHRAGLPWRADVHRQVLDGLLGERYAGGGEPRRLAELADEVSAAFGRRVR---PEL 228

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA-DS 687
             D+L    +  +G + ++    T   +LE I   D+P +  +LE+++L +I   +    
Sbjct: 229 SADVLKAFAR--AGVRLRS----TRRWELEGI---DHPAVPPLLEYKKLYRIWVAHGWGW 279

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L + +  R  R    Y     ++GR  +L      IP      + IRRA ++    +L+ 
Sbjct: 280 LQDWV--RDGRFRPAYQPGGAVSGRWTTLGGGALQIP------KVIRRAVVADAGWRLVV 331

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD  Q+E R+LA +++   L +V  +  D++  ++   F  +        R  AK     
Sbjct: 332 ADVDQMEPRVLAAVSRDPGLMEVAAHEDDLYTRLSDRAFSGD--------REQAKLALLG 383

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            +YG +              + D +K       RFP    Y+++      +   V T  G
Sbjct: 384 AVYGQT--------------SGDGLKNLAALRRRFPAAVAYVDEAARAGEEGRLVRTWLG 429

Query: 865 R-------RIHYDEINSPKSSIRNINERAAINAPIQG-----SAADITRRAMISVHKSLE 912
           R       R   DE   P+ +     + AA   P  G     +++D   R   + +  ++
Sbjct: 430 RTSPRAVGRDGDDEAGIPQEAPDPAGDPAAGAGPATGFTPGYASSDARARGRFTRNFVVQ 489

Query: 913 DH-----------------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---C 952
                               +  +++   HDE++   P +E     + +  + E A    
Sbjct: 490 GSAADWALLLLAAVRQALVGMRAELVFFQHDEVIVHCPADEADAVVEAVRQAGETAGEVA 549

Query: 953 LPKINLRVPLKVNI 966
             +  +R P+   +
Sbjct: 550 FGRTPVRFPMTTAV 563


>gi|262212193|gb|ACY35713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  FI  P + ++ AD + IELR+L+H          ++N      ++  +I  VN 
Sbjct: 3   HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYADILLNGDIHQVNA 56

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++     ++  S+AA     +  + Y     G+ +
Sbjct: 57  DKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 115

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +E  K    + G+++ + GR+I    ++SP           A+N  +QG++A + +R M
Sbjct: 116 LLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYCLQGNSAILAKRWM 162

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +    +L+   L    L  +HDE
Sbjct: 163 VINQNNLKLLNLCCSQLAFVHDE 185


>gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 662

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 35/181 (19%)

Query: 666 PIIKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           P ++ +LE RQ L+K       ++   +  + R + +  FY +    TGR A     LQN
Sbjct: 293 PELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGV--NRTGRWAGRLIQLQN 350

Query: 723 IP----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +P                            +   L Q IR AFI     +   +D+S IE
Sbjct: 351 LPQNHLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFSAIE 410

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGI 812
            R++A  A  T   +VFE   DI+   A+++F V +EK  ++  +R+  K    ++ YG 
Sbjct: 411 ARVIAWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGG 470

Query: 813 S 813
           S
Sbjct: 471 S 471


>gi|297201366|ref|ZP_06918763.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147869|gb|EFH28770.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 563

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 128/323 (39%), Gaps = 66/323 (20%)

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           +I   D+P +K ++E+++L +I   +  S L + +  R  R    +    T+TGR  +  
Sbjct: 247 EIQSLDHPAVKPLVEYKKLYRIWVAHGWSWLQDWV--RDGRFRPEFLAGGTVTGRWVTHG 304

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
                IP      + IRRA ++ P  +L+ AD  Q+E R+LA I++   L +V     D+
Sbjct: 305 GGALQIP------KVIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDL 358

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF- 836
           ++ V+   F  +        R  AK      +YG +              + D +K    
Sbjct: 359 YQSVSDRAFSGD--------RAQAKLAVLGAVYGQT--------------SGDGLKNLAA 396

Query: 837 --HRFPGIHEYIEKTKNFVRQNGYVETIFGRRI---------------HYDEINSPKS-- 877
              RFP    Y++       +   V T  GR                   D    P S  
Sbjct: 397 LRRRFPKAVAYVDDAARAGEEGRLVRTWLGRTCPPAAGAGDAEEAGIPQDDPAGQPASGE 456

Query: 878 -----SIRNINERA----AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
                   + N RA    A N  +QGSAAD     ++          +A +++   HDE+
Sbjct: 457 DGWVPGYASTNTRARGRFARNFVVQGSAADWA--LLLLAALRQACAGMAAELVFFQHDEV 514

Query: 929 VFEVPEEEITTASQIIVHSMEKA 951
           +   P+EE    ++ +V ++ +A
Sbjct: 515 IVHCPKEE----AEAVVAAIREA 533


>gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4]
          Length = 649

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 37/184 (20%)

Query: 664 DNPIIKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNL 720
           +NP +K +LE R+ +SK      +++   +  ++R + +  FY   ++ TGR A     +
Sbjct: 272 ENPEVKRLLELRRAMSKTSVKKYEAMERSVGSDQRVRGLLQFY--GASRTGRWAGRLVQI 329

Query: 721 QNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQ 752
            N+P                            +   L Q IR AFI     + + AD+S 
Sbjct: 330 HNLPRNSLKDLQVARELLESGKYEALEVLFESVSDVLSQLIRTAFIPSKGHRFVVADFSA 389

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE---KVSPQMRRHAKTINFSII 809
           IE R++A +A       VF++   I+   AA++F V IE   K SP +R+  K    ++ 
Sbjct: 390 IEARVIAWLAGERWRMDVFQSHGKIYEASAAQMFKVPIETIDKGSP-LRQKGKIAELALG 448

Query: 810 YGIS 813
           YG S
Sbjct: 449 YGGS 452


>gi|254388656|ref|ZP_05003889.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197702376|gb|EDY48188.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 562

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 82/434 (18%), Positives = 161/434 (37%), Gaps = 88/434 (20%)

Query: 579 VVSQMEITGIQIDQDLLKQV----------SAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           V ++M   G+    D+ +QV               + L  L + +    G +     P+ 
Sbjct: 163 VAAEMHRAGLPWRADVHRQVLDGLLGERYAGGGEPRRLAELADEVSAAFGRRVR---PEL 219

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA-DS 687
             D+L    +  +G + ++    T   +LE I   D+P +  +LE+++L +I   +    
Sbjct: 220 SADVLKAFAR--AGVRLRS----TRRWELEGI---DHPAVPPLLEYKKLYRIWVAHGWGW 270

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L + +  R  R    Y     ++GR  +L      IP      + IRRA ++    +L+ 
Sbjct: 271 LQDWV--RDGRFRPAYQPGGAVSGRWTTLGGGALQIP------KVIRRAVVADAGWRLVV 322

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD  Q+E R+LA +++   L +V  +  D++  ++   F  +        R  AK     
Sbjct: 323 ADVDQMEPRVLAAVSRDPGLMEVAAHEDDLYTRLSDRAFSGD--------REQAKLALLG 374

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            +YG +              + D +K       RFP    Y+++      +   V T  G
Sbjct: 375 AVYGQT--------------SGDGLKNLAALRRRFPAAVAYVDEAARAGEEGRLVRTWLG 420

Query: 865 R-------RIHYDEINSPKSSIRNINERAAINAPIQG-----SAADITRRAMISVHKSLE 912
           R       R   DE   P+ +     + AA   P  G     +++D   R   + +  ++
Sbjct: 421 RTSPRAVGRDGDDEAGIPQEAPDPAGDPAAGAGPATGFTPGYASSDARARGRFTRNFVVQ 480

Query: 913 DH-----------------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---C 952
                               +  +++   HDE++   P +E     + +  + E A    
Sbjct: 481 GSAADWALLLLAAVRQALVGMRAELVFFQHDEVIVHCPADEADAVVEAVRQAGETAGEVA 540

Query: 953 LPKINLRVPLKVNI 966
             +  +R P+   +
Sbjct: 541 FGRTPVRFPMTTAV 554


>gi|330469036|ref|YP_004406779.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
 gi|328812007|gb|AEB46179.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
          Length = 548

 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 119/323 (36%), Gaps = 49/323 (15%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P +  +LE+++L +I + +  +       R  R    Y     ++GR A+       I
Sbjct: 247 DHPAVPLVLEYKELYRIWTAHGRAW-RDAWVRDGRFQPEYVPGGVVSGRWATRGGGALQI 305

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      + IRRA ++ P  + + AD  Q+E R+LA ++    L        D+++ +A 
Sbjct: 306 P------KVIRRAAMADPGWRFVVADAGQLEPRVLAAVSGDARLAAAGATG-DLYQALAR 358

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           + FG +        R  AK      +YG +             EA   +      +P   
Sbjct: 359 DAFGGD--------RGRAKLALLGAMYGQT-----------GGEAVPALAGVRGNYPTAF 399

Query: 844 EYIEKTKNFVRQNGYVETIFGRRI--------------HYDEINSPKSSIRNINERAAI- 888
            Y+E         G V +  GR                  D    P+S            
Sbjct: 400 GYVEAAARTGEAGGLVRSWLGRTCPPGSAGFATDEGVADPDAAGDPQSPRARAARSRGRF 459

Query: 889 --NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
             N  IQ +AA+     +  +   L   +   +++   HDE++   P E+    ++ +  
Sbjct: 460 TRNFVIQATAAEWASTLLAVLRGELAGTE--AELVFFQHDEVIVHCPAEQAERVAEAVQR 517

Query: 947 SMEKACL---PKINLRVPLKVNI 966
           +  +A +       +R PL ++I
Sbjct: 518 AGRRATVLLFGDTPVRFPLDLSI 540


>gi|229472545|gb|ACQ72787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  ++  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDVHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472233|gb|ACQ72631.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342135|gb|ACY54578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|307084736|ref|ZP_07493849.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu012]
 gi|308365685|gb|EFP54536.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu012]
          Length = 133

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRRENILEYAE 238
           L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   K    K  R  +L  + 
Sbjct: 13  LALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASA 72

Query: 239 TARLSRKLVMLRTDVPITI 257
             + + ++V + TD P+T+
Sbjct: 73  YIKAADRVVRVATDAPVTL 91


>gi|323934233|gb|EGB30657.1| 5'-3' exonuclease [Escherichia coli E1520]
          Length = 314

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 28/242 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N+LF VDG+S  Y    +  L    H+G + V A  GF       ++N R+ +   H   
Sbjct: 2   NYLF-VDGNSLGYYHQQSDKL----HNGEMEVQAAFGF-------VKNVRRYASILHARP 49

Query: 64  IFDYPAVT-FRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFE 116
           +  +   +  R + YPDYKANR   P+M         Q P +     A G+  +  +  E
Sbjct: 50  MILWDGFSDKRRDFYPDYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVTQLIAKDAE 109

Query: 117 ADDIIATY-TYIAEKEGFA-VTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKK 171
           ADD+     + +A +     + +++ D D +QLV        L +  K ++++ E   + 
Sbjct: 110 ADDLAGLLVSRMAPQPTVEHIYLLTGDSDWLQLVRENVSWVSLREDAKNKQVNFEQFAEL 169

Query: 172 WGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKK 228
            G   P   +  +AL GD+ DNI G+ GIG   A  LL E+G++  ++  IN   I   K
Sbjct: 170 TGFATPRAFLEAKALQGDNSDNISGVGGIGAGGAKELLHEWGSVATMVRGINDGSIVVDK 229

Query: 229 RR 230
            R
Sbjct: 230 GR 231


>gi|262212093|gb|ACY35663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQVMVGADLAGIELRMLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKR-- 834
             ++  +I  VN +K+    R   KT+ ++ +YG    ++     ++  S+AA+   +  
Sbjct: 51  DILLNGDIHQVNADKIGIS-RELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 835 ---YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAVLAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212153|gb|ACY35693.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212177|gb|ACY35705.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G  + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGPDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +  M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKWWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|158315552|ref|YP_001508060.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
 gi|158110957|gb|ABW13154.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
          Length = 673

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 116/295 (39%), Gaps = 61/295 (20%)

Query: 663 GDNPIIKNILEWRQLSKIKSTYA-DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
           G +P+++ +L WR+  +I +TY    L  H+     R+   +  +    GR+ +    L 
Sbjct: 369 GVHPVVEALLAWRKAERIATTYGYRWLDTHVGA-DGRLRGEWRGSDGAAGRMTAAA-GLH 426

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           N+P        +R   I+ P  + + AD  QIE R+LA ++    L +      D++  V
Sbjct: 427 NLP------ADLRVVVIAEPGYRFVRADLGQIEPRVLAVVSGDPELTRATRQD-DLYAPV 479

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AA + GV+        R  AK    + +YG +              A   +++    +P 
Sbjct: 480 AASL-GVD--------RPTAKVAVLAAMYGQT-----------TGVAGQALRQMRETYP- 518

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER------AAI------- 888
               +                 GR      +  P++ +R    R      AA+       
Sbjct: 519 ----VALAYLDAADATGRAAALGRPPPNPPVTDPQARLRTFGGRRVPLRFAAVDDGADEN 574

Query: 889 -----------NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
                      NA +QG+AA++ +   ++V +++    L   ++L +HDEL+  V
Sbjct: 575 RVGMTWGRFARNAVVQGAAAELFKAWAVTVRQAIA--PLGGAIVLCLHDELLLHV 627


>gi|197935871|ref|YP_002213707.1| DNA polymerase [Ralstonia phage RSB1]
 gi|197927034|dbj|BAG70376.1| DNA polymerase [Ralstonia phage RSB1]
          Length = 815

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 99/258 (38%), Gaps = 56/258 (21%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK--IRRAFIS--PPTKKLISADYSQIE 754
           VH   ++  T+T RL+S +PNLQNIP     GQK   +  F S      K+I +D+S +E
Sbjct: 451 VHHTLNMCRTVTARLSSSDPNLQNIP----KGQKSEAKTMFESRFGADGKIIQSDFSSLE 506

Query: 755 LRILAHIAKITPLYQVFENSLDIH--RMVAAE--------------IFGVNIEKVSPQ-- 796
           + + A +     L       +D+H  R+ A E                GV++ +      
Sbjct: 507 VYVQAMLTLCKQLIADLAAGIDMHCMRLAAKEKREYDEVLMLCKKGKVGVDLTQEERDEW 566

Query: 797 --MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK+ +F   YG     +A    IP  E          R+P I EY E   + +R
Sbjct: 567 DYKRTGAKSFSFQRAYGAGVAAIAAGTGIPLEEVQALADAEDARYPEIGEYFEMKADEIR 626

Query: 855 QN----------------------GYVETIFGRRIHYDEINSPKSSIRNINERAAI---- 888
           +                       GY  T  G+R  Y E  SPK  I     R       
Sbjct: 627 ETRTPTLDIVEHPEIKGLKCQLGKGYSVTPDGKRYSYRESPSPKYMIERGRPRTGFVPTQ 686

Query: 889 --NAPIQGSAADITRRAM 904
             N  +QG+  ++ + AM
Sbjct: 687 IKNYEVQGTGGEVMKAAM 704


>gi|2996329|gb|AAC13209.1| DNA polymerase I [Yersinia pestis KIM 10]
          Length = 289

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 21/174 (12%)

Query: 73  RNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY-T 125
           R + YP+YKANR   P+M         Q P +     A G+  +  +  EADD+     +
Sbjct: 35  RRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDLAGMLVS 94

Query: 126 YIAEKEGFA-VTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKKWGIP-PEKMV 180
            +A +     + +++ D D +QLV        L +  K ++++ E   +  G+P P   +
Sbjct: 95  RLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGLPTPRAFL 154

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYG---------NLENILINASRIK 225
             +AL GD+ DNI G+ GIG   A  LL E+G         N  +I+IN  R K
Sbjct: 155 EAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINKGRYK 208


>gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 470

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 126/298 (42%), Gaps = 53/298 (17%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLE--ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           GI+IDQ L+   +A   +N+   +  +   +L+G   N +SP QL D L  +     GAK
Sbjct: 30  GIRIDQQLVN--NAIKCQNVFHDQYLQTAKELTGLA-NPNSPLQLKDWLQQQ-----GAK 81

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHT 701
           T +    + AQ L Q   G    +  IL  RQL   S +K   A       + R   +  
Sbjct: 82  TDSLSKASVAQ-LLQTTTGK---VHQILALRQLLSKSSVKKYQAMQKAMCQDGRVHGLLQ 137

Query: 702 FYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKI 733
           FY   +  TGR A     +QN+P                            +   L Q I
Sbjct: 138 FY--GANRTGRWAGRLVQVQNLPRNSMPDLEEARKLVKQGNVTALAMLYDSVPDVLSQLI 195

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK- 792
           R AFI         AD+S +E R++A ++      + F  + DI+   A+++FGV + K 
Sbjct: 196 RTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQEAFAKNEDIYCASASQMFGVPVVKH 255

Query: 793 -VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
            ++ ++R+  K    ++ YG S   L    AT+L +   E    ++ + +  P I ++
Sbjct: 256 GINGELRQKGKIAELALGYGGSIGALKAMGATKLVLTDDELPPLVQMWRNASPHIVQF 313


>gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
          Length = 644

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 114/281 (40%), Gaps = 57/281 (20%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L + IR AF++ P  + I +D+S IE R++ ++A    + + F  +  I+   A+++F +
Sbjct: 365 LSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKIYEQTASKMFHI 424

Query: 789 NIEKV---SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE-------------AADYI 832
            IE++   SP  R   K  + +  YG +   L +   +   E             A  +I
Sbjct: 425 PIEEITKGSP-YRARGKVASLACQYGGAEGALVSMGALNFVEEEELKGLVQSWRTANPHI 483

Query: 833 KRYFHRFPGIHEYIEKTK---------------------------NFVRQNGYVETIFGR 865
             Y++   G  +   K +                           ++VR    V      
Sbjct: 484 VNYWYEIDGAVKAAVKERKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSE 543

Query: 866 RIHYDEINSPK--SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            + Y+ I + +  + I +   +   N  +Q +A D+   AM+ + K   D      ++  
Sbjct: 544 SVSYEGIGTNRKWTRIESYGAKFCENI-VQATARDVLAEAMLCLEKKGFD------IVCH 596

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           IHDE+V EVPE    T+S   V+ +   C P     +PLK 
Sbjct: 597 IHDEVVLEVPE---GTSSVEEVNGIMAVC-PDWCEGLPLKA 633


>gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 310

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)

Query: 710 TGRLASLEP-NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           TGR    E  NLQN+      G + R+A  +P  + +  AD S IE RI+A  A+ T L 
Sbjct: 55  TGRYGGNEGLNLQNL----QRGSEHRKALTAPFGQLVYVADSSNIEARIVAWFAQETALL 110

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH-AKTINFSIIYGIS 813
             F+N +D +  +A +I+G  + K + Q+ R+  K     + YG+ 
Sbjct: 111 NQFKNGIDTYATLATDIYGFPVTKQTHQLERNVGKVARLGLQYGMG 156


>gi|262212059|gb|ACY35646.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212071|gb|ACY35652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212081|gb|ACY35657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212101|gb|ACY35667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212145|gb|ACY35689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQVMVGADLAGIELRMLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKR-- 834
             ++  +I  VN +K+    R   KT+ ++ +YG    ++     ++  S+AA+   +  
Sbjct: 51  DILLNGDIHQVNADKIGIS-RELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 835 ---YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|309797643|ref|ZP_07692030.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 145-7]
 gi|308118740|gb|EFO56002.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 145-7]
          Length = 331

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 107/242 (44%), Gaps = 28/242 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N+LF VDG+S  Y    +  L    H+G + V A  GF       ++N R+ +   H   
Sbjct: 19  NYLF-VDGNSLGYYHQQSDKL----HNGEMEVQAAFGF-------VKNVRRYASILHARP 66

Query: 64  IFDYPAVT-FRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFE 116
           +  +   +  R + YPDYKANR   P+M         Q P +     A G+  +  +  E
Sbjct: 67  MILWDGFSDKRRDFYPDYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVTQLIAKDAE 126

Query: 117 ADDIIATYTYIAEKEGFA--VTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKK 171
           ADD+          +     + +++ D D +QLV        L +  K ++++ E   + 
Sbjct: 127 ADDLAGLLVASIAPQPIVEHIYLLTGDSDWLQLVRENVSWVSLREDAKNKQVNFEQFAEL 186

Query: 172 WGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKK 228
            G   P   +  +AL GD  DNI G+ GIG   A  LL E+G++  ++  IN   I   K
Sbjct: 187 TGFATPRAFLEAKALQGDKSDNISGVGGIGAGGAKELLHEWGSVATMVRGINDGSIVVDK 246

Query: 229 RR 230
            R
Sbjct: 247 GR 248


>gi|47934634|gb|AAT39755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDILF-TKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 23  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLVGVGVKFKQ--KT 80

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 81  EKGAVIVNEKVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 134

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI    S +ELR+LAH
Sbjct: 135 NGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCGASGLELRMLAH 190


>gi|302808413|ref|XP_002985901.1| hypothetical protein SELMODRAFT_424808 [Selaginella moellendorffii]
 gi|300146408|gb|EFJ13078.1| hypothetical protein SELMODRAFT_424808 [Selaginella moellendorffii]
          Length = 472

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 78/149 (52%), Gaps = 10/149 (6%)

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADD++ T              + TD+ L  ++ P   +  +   + I + +     G+ 
Sbjct: 197 EADDVVTTLARQVTDRS-----LKTDRSLKAVLHPRIKISSSSFRKTITLNNTNASLGLN 251

Query: 176 PEKM-VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RE 231
            + + +  + L GD+ D  PG+PG G KTA  L++++G+LENIL +A+ I+   +   ++
Sbjct: 252 WDFVYIQFRCLLGDAADGGPGVPGFGRKTALKLMRKHGSLENIL-SAAAIRAVGKPYIQD 310

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLE 260
            + E++     + +++ LR D+ + +P+E
Sbjct: 311 ALKEHSVLLEKNMEVLSLRRDINVELPVE 339



 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 14/93 (15%)

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAETARLSRK 245
           + D +PG+PG    TA  L++++G+LEN L++A+ I+   +   ++ + E++     + +
Sbjct: 40  AADGVPGVPGF---TALKLMRKHGSLEN-LVSAAAIRTVVKPYMQDALKEHSVLLEKNLE 95

Query: 246 LVMLRTDVPITIPLE-------HLILEDCNGPR 271
           ++ LR D+ + +PLE         IL  C+G R
Sbjct: 96  VLSLRRDIDVELPLEWCLSRMSQTILLHCSGWR 128


>gi|262342235|gb|ACY54628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + +ELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGVELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|148272793|ref|YP_001222354.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830723|emb|CAN01663.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 556

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 113/298 (37%), Gaps = 50/298 (16%)

Query: 579 VVSQMEITGIQIDQ--------DLL--KQVSAEISKNLLSLEENIYD-LSGEKFNLSSPK 627
           V ++M   G+  D         DLL  +         LL L   + + L     N+ SP 
Sbjct: 165 VAAEMSADGLPWDTSVHDALLVDLLGGRPAHGGAPPALLRLAARVREILRAPDLNVDSPP 224

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
              D+L   L+        T QW+     L++I   D+P+I ++LE ++LS++ +    +
Sbjct: 225 ---DVL-RALRRAGIDAASTRQWE-----LQEI---DHPVIASLLEHKRLSRLLTANGWT 272

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
                  R  R H  Y     +TGR A+       +P      ++IR A  +    +L+ 
Sbjct: 273 W-METWIRDGRFHPEYVPGGVVTGRWAASGGGALQLP------RQIRSAVRADRGWRLVV 325

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD +Q+E R+LA +A+   +      +     +V A +            R HAK     
Sbjct: 326 ADAAQLEPRVLAALAEDRAMADAGRGTDLYQGLVDAGVV---------DTRAHAKVAMLG 376

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
            +YG +             E+   + R    +P    Y+E+          V T  GR
Sbjct: 377 AMYGAT-----------SGESGRLMPRLVRAYPRATGYVERAARAGESGAVVSTRLGR 423


>gi|310005686|gb|ADP00074.1| exonuclease [Cyanophage 9515-10a]
          Length = 246

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 95/217 (43%), Gaps = 23/217 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58
           M +   + L+D     Y+A  A        D + V A + F N+L    +  +K + A  
Sbjct: 1   MVRSTLMLLIDTDFLAYKAAQACEEGIDFGDDVIV-AQSNFSNVLKIFERELKKVTTAMF 59

Query: 59  -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
              F + F  P   FR +I  DYK +R +   +   +L  V      +    +   G EA
Sbjct: 60  DDEFILYFSSPQ-NFRKKISADYKGHRNRRKPLGYKRL--VNHCKDKYRF--VLRDGLEA 114

Query: 118 DDIIAT-YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           DD +    T   +KE     I+S DKD+ Q+      L+D     K D+E + K+ G   
Sbjct: 115 DDALGMDATKYPDKE---TIIVSPDKDMRQIPG---ILWDM----KGDVEEITKEDG--- 161

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
           +    +Q+L GD  D  PG PGIG K A  LL ++ N
Sbjct: 162 DMWHLIQSLAGDPTDGYPGCPGIGVKRATELLNKHKN 198


>gi|148807489|gb|ABR13549.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   D    H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDPWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|220979962|emb|CAP72154.1| Putative exonuclease (Hypothetical protein) [Escherichia coli LF82]
          Length = 314

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 28/242 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N+LF VDG+S  Y    +  L    H+G + V A  GF       ++N R+ +   H   
Sbjct: 2   NYLF-VDGNSLGYYHQQSDKL----HNGEMEVQAAFGF-------VKNVRRYASILHARP 49

Query: 64  IFDYPAVT-FRNEIYPDYKANRPKIPEM------LLPQLPLVRLATQAFGIPAIEIQGFE 116
           +  +   +  R + YPDYKANR   P+M         Q P +     A G+  +  +  E
Sbjct: 50  MILWDGFSDKRRDFYPDYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVTQLIAKDAE 109

Query: 117 ADDIIATY-TYIAEKEGFA-VTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKK 171
           ADD+     + +A +     + +++ D D +QLV        L +  K ++++ E   + 
Sbjct: 110 ADDLAGLLVSRMAPQPTVEHIYLLTGDSDWLQLVRENVSWVSLREDAKNKQVNFEQFAEL 169

Query: 172 WGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKK 228
            G   P   +  +AL GD  DNI G+ GIG   A  LL E+G++  ++  IN   I   K
Sbjct: 170 TGFATPRAFLEAKALQGDKSDNISGVGGIGAGGAKELLHEWGSVATMVRGINDGSIVVDK 229

Query: 229 RR 230
            R
Sbjct: 230 GR 231


>gi|262342195|gb|ACY54608.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGADDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + G +I    ++SP           A++  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGGKI---IVDSPHK---------ALSYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
 gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
          Length = 668

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 97/240 (40%), Gaps = 45/240 (18%)

Query: 668 IKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +  +LE RQ    + +K   A  +      R + +  +Y   +  TGR A     LQN+P
Sbjct: 289 VARMLEIRQQLGKTSVKKYVAMDVARGEGDRVRGLTQYY--GANRTGRWAGRLVQLQNLP 346

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       +   L Q IR AFI     K + AD+S IE R
Sbjct: 347 RNYLKTLDYARELVKAKNYDGLRILYGNVPDTLSQLIRTAFIPSEGHKFVVADFSAIEAR 406

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---PQ--MRRHAKTINFSIIYG 811
            +A +A    + +VF     I+   AA++FGV +E+++   P+  +R+  K    ++ Y 
Sbjct: 407 AIAWLAGEQWVNEVFATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQ 466

Query: 812 ISPFRL----ATQLRIPRSEAADYIKRYFH---RFPGIHEYIEKTKNFVRQNGYVETIFG 864
            S   L    A ++ +   E  D + R+ +   R  G+   +E T   V Q    + + G
Sbjct: 467 GSTAALIAMGALKMGLTEDELPDIVTRWRNANKRICGLWYAVENTALRVMQTAQPQGLNG 526


>gi|71402991|ref|XP_804342.1| mitochondrial DNA polymerase I protein D [Trypanosoma cruzi strain CL
            Brener]
 gi|70867265|gb|EAN82491.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            cruzi]
          Length = 1607

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 120/284 (42%), Gaps = 57/284 (20%)

Query: 669  KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS----------TMTGRLASLEP 718
            + ILE R + K+  TY +    + +  T  V   +S+ S          T TGRLAS  P
Sbjct: 1238 ETILELRTMEKLIGTYYE----NTDDGTGMVSLVHSVDSCIHHELIHNKTNTGRLASANP 1293

Query: 719  NLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLD 776
            N QNIP K D    +R  F+S   +K   I ADYSQ+E+  LA +A    + +   +++D
Sbjct: 1294 NCQNIP-KED-KSPLREMFVSRYGEKGMCIEADYSQLEVVALAVLADDFQMLEDLRSNVD 1351

Query: 777  IH-RMVA--------AEIFGVNIEKVSPQ---MRRHAKTINFSIIYGISPFRLATQLRIP 824
             H + VA         E+     +   P+   +R+ AK  +F   YG     ++    + 
Sbjct: 1352 FHCKRVAMMRPDLQYTEVLLRAKKNKEPEFVKLRQQAKIFSFQRQYGAGVKMISQSTGLT 1411

Query: 825  RSEAADYIKRYFHRFPGIHEY--------------IEKTKNFVRQNGYVETIF----GRR 866
            + +  + I++    + G+  +              I+     VR + + + +F    G R
Sbjct: 1412 QDQVRNLIEKERETYRGVDAFNSMVALSANNFDASIQDGSRNVRGHQFFKGMFPVITGSR 1471

Query: 867  IHYDEINSPKSSIR---------NINERAAINAPIQGSAADITR 901
              + E + P+  +R         N +     N P+QG A +I +
Sbjct: 1472 YVFTESDVPEGIMREKSMSAKSTNFSPTHLKNYPVQGFAGEIVQ 1515


>gi|261334251|emb|CBH17245.1| mitochondrial DNA polymerase I protein D,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1629

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 134/337 (39%), Gaps = 64/337 (18%)

Query: 618  GEKFNLSSPKQL-GDILFTKLKFPSGAKTKTGQ-----WKTTAQDLEQINCGDNPIIKNI 671
            G + N   P QL  + +  K + P+  + + G+     +K T  D            + I
Sbjct: 1212 GGRLNQYVPSQLDAEQVMRKFRSPTTRQLQVGEDSLTYFKKTHGD---------KTAETI 1262

Query: 672  LEWRQLSKIKSTY------ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            LE R + K+  TY         + + ++     +H       T TGRLAS  PN QNIP 
Sbjct: 1263 LELRAMEKLIGTYYENTDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASANPNCQNIP- 1321

Query: 726  KTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIH-RMVA 782
            K D    +R  F+S   +K   I ADYSQ+E+  LA +A    + +   +++D H + VA
Sbjct: 1322 KED-KSPLREMFVSRYGEKGMCIEADYSQLEVVALAVLANDQQMLEDLRSNVDFHCKRVA 1380

Query: 783  --------AEIFGVNIEKVSPQ---MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
                     EI     +   P+   +R+ AK  +F   YG     ++    + + +    
Sbjct: 1381 MMRPDLQYTEILKKAKKDKEPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQDQVRHL 1440

Query: 832  IKRYFHRFPGIHEY--------------IEKTKNFVRQN----GYVETIFGRRIHYDEIN 873
            I++    + G+  +              ++     VR +    G    I G R  + E +
Sbjct: 1441 IEKERETYRGVDVFNSMVALSANKFDASLQNGSRNVRGHQIFKGMFPVITGSRYIFTESD 1500

Query: 874  SPKSSIR---------NINERAAINAPIQGSAADITR 901
             P+  +R         N +     N P+QG A +I +
Sbjct: 1501 VPEGLLRNKSLAVKSTNFSPTHLKNYPVQGFAGEIVQ 1537


>gi|71754987|ref|XP_828408.1| mitochondrial DNA polymerase I protein D [Trypanosoma brucei TREU927]
 gi|21929665|gb|AAM81965.1|AF445379_1 DNA polymerase I-like protein D [Trypanosoma brucei]
 gi|70833794|gb|EAN79296.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            brucei]
          Length = 1629

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 134/337 (39%), Gaps = 64/337 (18%)

Query: 618  GEKFNLSSPKQL-GDILFTKLKFPSGAKTKTGQ-----WKTTAQDLEQINCGDNPIIKNI 671
            G + N   P QL  + +  K + P+  + + G+     +K T  D            + I
Sbjct: 1212 GGRLNQYVPSQLDAEQVMRKFRSPTTRQLQVGEDSLTYFKKTHGD---------KTAETI 1262

Query: 672  LEWRQLSKIKSTY------ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            LE R + K+  TY         + + ++     +H       T TGRLAS  PN QNIP 
Sbjct: 1263 LELRAMEKLIGTYYENTDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASANPNCQNIP- 1321

Query: 726  KTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIH-RMVA 782
            K D    +R  F+S   +K   I ADYSQ+E+  LA +A    + +   +++D H + VA
Sbjct: 1322 KED-KSPLREMFVSRYGEKGMCIEADYSQLEVVALAVLANDQQMLEDLRSNVDFHCKRVA 1380

Query: 783  --------AEIFGVNIEKVSPQ---MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
                     EI     +   P+   +R+ AK  +F   YG     ++    + + +    
Sbjct: 1381 MMRPDLQYTEILKKAKKDKEPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQDQVRHL 1440

Query: 832  IKRYFHRFPGIHEY--------------IEKTKNFVRQN----GYVETIFGRRIHYDEIN 873
            I++    + G+  +              ++     VR +    G    I G R  + E +
Sbjct: 1441 IEKERETYRGVDVFNSMVALSANKFDASLQNGSRNVRGHQIFKGMFPVITGSRYIFTESD 1500

Query: 874  SPKSSIR---------NINERAAINAPIQGSAADITR 901
             P+  +R         N +     N P+QG A +I +
Sbjct: 1501 VPEGLLRNKSLAVKSTNFSPTHLKNYPVQGFAGEIVQ 1537


>gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterococcus sp. 7L76]
          Length = 545

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 52/242 (21%)

Query: 587 GIQIDQDLLKQVSA--EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           GI+ID+D ++      E+SK    L + + +L+G    L +P  +  +         G +
Sbjct: 206 GIEIDKDFVEAAVQLDELSK--AGLNQQLQELTG----LENPNSV--LQMRGWLLDHGLE 257

Query: 645 TKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQR 698
           T++   K   + LEQ      PI   +K +L  RQ L+K       ++ N    + R++ 
Sbjct: 258 TESLGKKAVDELLEQ------PIDENLKQVLVLRQQLAKSSVKKYQAMQNFACSDNRSRG 311

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLG 730
           +  FY   +  TGR A    +LQN+P                            +   L 
Sbjct: 312 LFQFY--GANRTGRFAGRGIHLQNLPQNHMSDLSEARSLVKQSNFEMLNILYGNVPNVLS 369

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           + +R AF+     K I +D+S IE R++A ++      +VF+N  DI+   A+++FGV +
Sbjct: 370 ELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGGDIYCASASQMFGVPV 429

Query: 791 EK 792
           EK
Sbjct: 430 EK 431


>gi|262342205|gb|ACY54613.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          +++    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHGYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A++  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALDYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|189427219|ref|YP_001949769.1| gp5 [Salmonella phage phiSG-JL2]
 gi|189085872|gb|ACD75687.1| gp5 [Salmonella phage phiSG-JL2]
          Length = 704

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 118/307 (38%), Gaps = 53/307 (17%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  +P +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    + ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I                +I   +    
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVKSSAWIGAEQKVQW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLIEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVN 965
            L          +  +HDE+      E I   +QI++ + ++A          R  L   
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVACRTEHI---AQIVIDTAQEAMRWVGEHWAFRCRLDTE 693

Query: 966 IKVSNNW 972
            K+  NW
Sbjct: 694 GKMGPNW 700


>gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 952

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q IR AFI     + I +D+S IE R+LA +A    +   F+N  DI+   A+++FGV
Sbjct: 674 LSQLIRTAFIPKEGCRFIVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQMFGV 733

Query: 789 NIEK--VSPQMRRHAKTINFSIIYGIS 813
            + K  V+  +R+  K    +  YG S
Sbjct: 734 PVVKHGVNGDLRQKGKVATLACGYGGS 760


>gi|262212075|gb|ACY35654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212091|gb|ACY35662.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212181|gb|ACY35707.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342239|gb|ACY54630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQVMVGADLAGIELRMLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKR-- 834
             ++  +I  VN +K+    R   KT+ ++ +YG    ++     ++  S+AA+   +  
Sbjct: 51  DILLNGDIHQVNADKIGIS-RELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 835 ---YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|229472347|gb|ACQ72688.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNRRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212157|gb|ACY35695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGCYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEV 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y      + + +   K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDVLDKLLGAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|148807599|gb|ABR13599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  +S+ ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEY-LMSQKRAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              ++GR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVSGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|148807511|gb|ABR13559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       F + S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFKVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|229472171|gb|ACQ72600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 32/217 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P       + R  F+  P + +++AD S IELR+L+H +AK       +++   
Sbjct: 1   PNLAQVPSDP----RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAAD 830
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  +
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKE 108

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
             + Y      + + +   K    + G+++ I GR+I  D   SP           A+N 
Sbjct: 109 IREAYIDAIDELDKLLAAIKK-ASERGFIKAIDGRKIMVD---SPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 156 CLQGNSAILAKRWMVINQQNIKELNLCCSQLAFVHDE 192


>gi|239908264|ref|YP_002955005.1| hypothetical protein DMR_36280 [Desulfovibrio magneticus RS-1]
 gi|239798130|dbj|BAH77119.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 1507

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 111/259 (42%), Gaps = 22/259 (8%)

Query: 725  IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
            I + L +K R  F+      +++ D    E  I++ ++  T    +  +  DI+  VA  
Sbjct: 1259 ILSTLNKKFRLLFLPSEGHVILAFDMKHFEPTIISSLSNDTYALGLINSGKDIYTEVAMS 1318

Query: 785  IFG-VNIEKVSPQMRRHAKTINFSIIYGISPFRLA-----TQLRIPRSEAADYIKRYFHR 838
            I G +N E+ +   R   K +    I G +   L      T + I RS +A+    + + 
Sbjct: 1319 ISGALNEERFND--RSFGKVLFNIAINGGNEHALVSRCYETNVIITRSCSAEIFNNFRNM 1376

Query: 839  FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            FP I ++  +  +  R  G + T F R ++ D+         N+ +   +N  +QGS AD
Sbjct: 1377 FPVIFQFQNRILHMARTYGKMYTKFSRVLYVDD---------NVKDSTIVNFVVQGSGAD 1427

Query: 899  ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-N 957
              +R ++ V+  L   +    +L    D L  +VPE       + +   +E +      N
Sbjct: 1428 AFKRLLLKVNDFLNHPE--EDILFHHFDALYIQVPEHGAAKRMEALREIIEDSLSSDFGN 1485

Query: 958  LRVPLKVNIKVSNNWQEEN 976
            +R  +  +++ S  W EE+
Sbjct: 1486 VRFSVAASMRRS--WAEED 1502


>gi|310005798|gb|ADP00184.1| exonuclease [Cyanophage NATL2A-133]
          Length = 240

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 27/244 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA---SHFAV 63
           + L+D     Y+A  A        D + V A + F N+L    +  +K + A     F +
Sbjct: 1   MLLIDTDFLAYKAAQACEEGIDFGDDVIV-AQSNFSNVLKIFERELKKVTTAMFDDEFIL 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA- 122
            F  P   FR +I  DYK +R +   +   +L  V      +    +   G EADD +  
Sbjct: 60  YFSSPQ-NFRKKISADYKGHRNRRKPLGYKRL--VNHCKDKYRF--VLRDGLEADDALGM 114

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
             T   +KE     I+S DKD+ Q+      L+D     K D+E + K+ G   +    +
Sbjct: 115 DATKYPDKE---TIIVSPDKDMRQIPG---VLWDM----KGDVEEITKEDG---DMWHLI 161

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GD  D  PG PGIG K A  LL ++ N    +  A + +     + +L     ARL
Sbjct: 162 QSLAGDPTDGYPGCPGIGVKRATELLNKHENKWEAICQAYKERGLSDDDALL----NARL 217

Query: 243 SRKL 246
           ++ L
Sbjct: 218 AKIL 221


>gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 726

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 127/325 (39%), Gaps = 61/325 (18%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK---QVSAEISKNLLSLEEN 612
           L P    E+ L+++   D+ M D        G+ ID +L     +++ E    L +  + 
Sbjct: 264 LNPVTPFERALYIF---DQTMND-------KGVCIDSELANNAIRMNDEAQDELFAEMQE 313

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
           I +L     N +SP QL   L +KL  P  +  K        +D +++  G +  +K +L
Sbjct: 314 ITNLE----NPNSPVQLKQWLSSKLGRPIQSLAK--------EDAKELATGASEDVKRVL 361

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD---- 728
             R +S   S               ++H         TGR A     + N+P  +     
Sbjct: 362 YLRSMSSKTSVKKYEAMTLAKCSDNKLHDLLQFYGAKTGRWAGRIVQVHNLPRNSSKDLA 421

Query: 729 ------------------------LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
                                   L Q IR AFI+     L   D+S IE R++A +A  
Sbjct: 422 LARELVKKNDFELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGE 481

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKV---SPQMRRHAKTINFSIIY--GISPFRL-- 817
               +VF  S  I+   AA +FGV+ + +   SP +R+  K    ++ Y  G +  ++  
Sbjct: 482 EWRLKVFRGSGRIYEASAARMFGVDEKTITHDSP-LRQKGKIAELALGYEGGANALKIMG 540

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGI 842
           A ++ +   E A  +  + +  P I
Sbjct: 541 ADKMGLSDPEIAQIVSGWRNSSPNI 565


>gi|262212365|gb|ACY35799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK---- 833
             ++  +I  VN +K+    R+  KT+  + +YG    ++      P S  A   K    
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTNAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEI 109

Query: 834 --RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  +    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEVIRK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R  +    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWTVINQNNLKLLNLCCSQLAFIHDE 192


>gi|70918106|ref|XP_733082.1| 5'-3' exonuclease, N-terminal resolvase-like domain, [Plasmodium
           chabaudi chabaudi]
 gi|56504551|emb|CAH76102.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium chabaudi chabaudi]
          Length = 202

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 42/207 (20%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVT-FRNEIYPDYKANRPKIPEML 91
           + ++ I GF   L K+ +          + +IFD       + EIY  YK  R K PE L
Sbjct: 1   INLSTIYGFTQSLNKIYK-----LFCPSYIIIFDSKTSNKEKREIYAQYKTLRKKNPEEL 55

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIAT-----YTYIA------------------ 128
             QL LV       GI  I  +  E+D+ IA+     Y  I                   
Sbjct: 56  YEQLKLVSEFCDIIGIKTIISENVESDNYIASLVDKIYNTIQTNNEWGPRHDENGLVSLT 115

Query: 129 ----EKEGFAVTIISTDKDLMQLVSPTTCLYDTV---------KEEKIDIEHVIKKWGIP 175
               ++  F + ++S+DKDL+QL+      ++ +         K   ++    I++  I 
Sbjct: 116 DDEIKENNFRIVVVSSDKDLLQLLEYNDNDHNNIDISVCQPNRKYRVVNAHTFIQEHEIY 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYK 202
           P +      L GD  D I G+P IG K
Sbjct: 176 PNQYSDYLILAGDKTDGISGLPNIGDK 202


>gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 651

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 97/249 (38%), Gaps = 51/249 (20%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L + IR AF++ P  + + ADYS IE R +A +A    +  +FE   DI+      +F  
Sbjct: 374 LSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGGDIYCETGTRMFRQ 433

Query: 789 NIEKVSPQMRRHAKTINFSIIY--GISPFRL--ATQLRIPRSEAADYIKRYFHRFPGIHE 844
            +EK SP +R+ AK    +  Y  G+   +     +L +   E AD +  +    P I +
Sbjct: 434 VVEKHSP-LRQRAKVAVLACGYQGGVGALKTMGGEKLGLSEDEMADIVAAWRAANPKIAQ 492

Query: 845 Y---IEKTKNFVRQNGYVETIFGRRIHYDE------------------------------ 871
               I      V ++G    +   R+ +D+                              
Sbjct: 493 LWWDINAAAIAVIKDGGARAVGRIRLAHDKGALIITLPSGRPLVYPSPRIGENRFGGESI 552

Query: 872 ------INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
                 +N     I     +   N  +Q +A DI   A+  + +S         +++ IH
Sbjct: 553 THMGVGVNRKWGRIETYGGKLTENI-VQATARDILAHAIARLERS------GYPVVMHIH 605

Query: 926 DELVFEVPE 934
           DE+V EVPE
Sbjct: 606 DEVVTEVPE 614


>gi|284991224|ref|YP_003409778.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
 gi|284064469|gb|ADB75407.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
          Length = 552

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 41/257 (15%)

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T +  LEQ+   D+P++  +LE+++L+++ +    +  +    R  R  +++     +TG
Sbjct: 233 TRSWTLEQL---DHPVVGPLLEYKRLARLLTANGWAWLD-TWVRDGRFRSWFVPGGVVTG 288

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R AS      ++P +      +R A ++    +L+ AD +Q+E R+LA ++    + +  
Sbjct: 289 RWASNGGGALSVPTQ------VRPAAVADDGWRLVVADVAQLEPRVLAGMSGDDAMAEAA 342

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
             +     MVAA            + R  AK      +YG +           R E+   
Sbjct: 343 RAADLYEGMVAAGTV---------ETRAQAKVAILGAMYGAT-----------RGESGRI 382

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           + R   R+P     +E+      +   V T+ GR        SP+ +        A+  P
Sbjct: 383 MPRLARRYPRAIGLVEQAARAGERGDVVHTLLGR-------GSPRPTGAWAERAVALGEP 435

Query: 892 IQGSAA----DITRRAM 904
            + S +    D  RRA 
Sbjct: 436 AEVSGSPEERDRARRAW 452


>gi|331697147|ref|YP_004333386.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
 gi|326951836|gb|AEA25533.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
          Length = 502

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 152/388 (39%), Gaps = 50/388 (12%)

Query: 579 VVSQMEITGIQID---QDLL-------KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           V  +M   G+  D    D L       +   +   + L +L ++I    G   N  SP +
Sbjct: 127 VAEEMRAEGLPWDAAVHDALLTAALGPRPAGSARPRRLAALADDIATAFGRPVNPDSPAE 186

Query: 629 -LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
            L       ++ PS          T +  L+Q+   D+P +  +L +++L+++ S +  +
Sbjct: 187 VLRAFGRVGVELPS----------TRSWVLKQV---DHPAVAPLLAYKELARLHSAHGWA 233

Query: 688 -LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            L   ++    R    Y +   ++GR A+       IP      + +R A  + P  +L+
Sbjct: 234 WLRTWVHD--GRFRPEYVVGGVVSGRWATRGGGALQIP------KAVRAAVRADPGNRLV 285

Query: 747 SADYSQIELRILAHIAKITPLYQVF--ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            AD +Q+E RILA +A    L +    +   D++  +A E+FG       P  R  AK  
Sbjct: 286 VADAAQLEPRILAAMAGDAALARAGGRDQDSDLYAGLAHELFG----GAGPDGRAKAKLA 341

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
             S IYG +             +A  ++     RFP   E +E       +   V +  G
Sbjct: 342 VLSAIYGQT-----------SGDAGAHLALLRRRFPAAVEVVEAAARAGEEGRIVRSWLG 390

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           R          + +      R   N  +Q +AA+     +  +  +L       +++   
Sbjct: 391 RTCPPAAPGDEQPARARARGRFTRNFVVQATAAEWALVLLAELRAALHAAGDPARLVFFQ 450

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKAC 952
           HDE++   P +    A++++  + + A 
Sbjct: 451 HDEVLLHGPADGAGLAARLVQDAADTAT 478


>gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
 gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
          Length = 601

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 28/173 (16%)

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP- 724
           PI + ++E RQ     ST   +    I     R H         TGR +      QN+P 
Sbjct: 230 PIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGATTGRWSGKHFQPQNLPR 289

Query: 725 -----------------------IKTD----LGQKIRRAFISPPTKKLISADYSQIELRI 757
                                  I  D    L   +R    +P  K+LI  DYSQIE R+
Sbjct: 290 PSFKDTDNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDYSQIEARV 349

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           L  +A            ++I+++ A++I+GV  EKV+ + R   K    ++ Y
Sbjct: 350 LPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGY 402


>gi|148807534|gb|ABR13570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   +  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTY--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPFGRECRSFWWVPEGHKLIGCDASGLELRMLAH 180


>gi|262342117|gb|ACY54569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F   P + ++ AD + IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDS----RFRELFQPSPGQVMVGADLAGIELRMLSH------FLARYDGGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK---- 833
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++        S +A   K    
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKQLSSSAAKKKGKEI 109

Query: 834 --RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RTAYVEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262342137|gb|ACY54579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++++YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYALLYGAGDEKIGHSCDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHE---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCGQLAFIHDE 192


>gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 646

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 30/169 (17%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------- 724
           +QL+K       ++ N +    +    F    +  TGR A     +QN+P          
Sbjct: 287 QQLAKSSVRKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHLEDLAEA 346

Query: 725 ------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
                             +   L Q IR AF+     +LI +D+S IE R++A +A    
Sbjct: 347 RALVRFGDFDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEW 406

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
              VF    DI+   A+++F V +EK  ++  +R+  K    ++ YG S
Sbjct: 407 RQDVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGS 455


>gi|148727216|ref|YP_001285708.1| p39 [Xanthomonas phage Xop411]
 gi|116583516|gb|ABK00186.1| p39 [Xanthomonas phage Xop411]
          Length = 793

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 137/329 (41%), Gaps = 65/329 (19%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRI 757
           VH    + +T+TGRL+S  PNLQN+P K D  + ++  F+S  P   ++ +D++ +E+ +
Sbjct: 441 VHHQLQMVNTVTGRLSSALPNLQNLP-KGDKSE-VKTLFVSRFPGGFIVQSDFTALEIYV 498

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM--------------RRHAKT 803
             +++  + L       LD+H    A+  GV+ + V  +               R  AK 
Sbjct: 499 QGNLSGDSALIADLRAGLDMHCKRLAQKEGVSYDYVFERAKDKKHIEYIVWNSKRSKAKG 558

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT-----KNFVRQNGY 858
            +F   YG     +A    +   E  + I+     +PGI EY ++T     +N V    Y
Sbjct: 559 FSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNLVPSKMY 618

Query: 859 VETIF-----------------GRRIHYDEINSPKSSIRNINERAAI----------NAP 891
           + + +                 G+R    +  +PK     + ER  +          N P
Sbjct: 619 ITSSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKW----LWEREGVQLTFSSTTTKNYP 674

Query: 892 IQGSAADITRRAM-ISVHKSLEDHKLATKMLL--QIHDELVFEVPEEEITTASQIIVHS- 947
           +QG+  +  + AM + V +         + L+   +HD    +    E+   S  ++H+ 
Sbjct: 675 VQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYID-SAPEVAKESMALLHAC 733

Query: 948 MEKAC-------LPKINLRVPLKVNIKVS 969
           ME+A          K+++ VP + +I  S
Sbjct: 734 MEEASRYIESQFAWKLHIDVPSETSIGPS 762


>gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 33/201 (16%)

Query: 584 EITGIQIDQDL-------LKQVSAEISKNLLSL-----EENIYDLSGEK-------FNLS 624
           E  G  +DQ L        K+   EI  +L +L     EE   + +G++       FN+ 
Sbjct: 1   ERNGWLLDQRLCHILCAKFKERMNEIESDLQALFPPIVEERYSEKTGKRLKDKVTVFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAK----TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           S +Q+ + L  K     GA     T TG+     + L++ +    P    +LE+  L K 
Sbjct: 61  SRQQVAERLSAK-----GAVWTELTPTGKPMVDEKTLKENS--HVPEAAQVLEYLLLQK- 112

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    +S   H+ +   RVH   +    +TGR+    PN+  +P + ++ G+  R  +I 
Sbjct: 113 RYAQVNSWLEHV-QDDGRVHGRVTTNGAVTGRMTHQNPNMAQVPSVNSEYGEDCRNCWIV 171

Query: 740 PPTKKLISADYSQIELRILAH 760
           P  +KL+  D S +ELR+LAH
Sbjct: 172 PEGRKLVGVDASGLELRMLAH 192


>gi|108757261|ref|YP_629462.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
 gi|108461141|gb|ABF86326.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
          Length = 669

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 142/358 (39%), Gaps = 100/358 (27%)

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD------SLPNH 691
           +FP G           A D + +    + +++++ +  ++ K KSTY D      SLP  
Sbjct: 282 RFPDG---------QVATDRDTLLGSGDALLEDLGKSGRVDKYKSTYLDVVEAGTSLP-- 330

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN R      F  L ST   R++S   + Q +P K      IR    + P     S DY 
Sbjct: 331 INPR------FNVLVSTT--RVSS---DYQQLPQKGG----IREVHEARPGFAYCSVDYG 375

Query: 752 QIELRILAHIA----KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM---------- 797
            +ELR +A  A      + + +   + LD+H + AAE  G + +++ P++          
Sbjct: 376 GLELRTMAQRAIWELGYSKMAEALNSGLDVHTLAAAEFLGASYDELLPKVKAKDPLAVAF 435

Query: 798 RRHAKTINF---------SIIY--------------------GISPFRLATQLRIPR--- 825
           R+ AK +NF         S++Y                    GI    +  Q R P+   
Sbjct: 436 RQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADVCGIERIVITVQ-RKPKMVC 494

Query: 826 ----SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI-- 879
                 A +   ++ + +P   E  ++ K+     G+ + +            P ++I  
Sbjct: 495 RACVEVAKELDTKWLNAWPEQRELQQRAKSSTYGGGFADVMI-----------PGANILR 543

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLE-DHK---LATKMLLQIHDELVFEVP 933
                   +N P QG  A   + AM  V + +  D +     ++++L +HDEL+ E+P
Sbjct: 544 GGCGYTQILNTPFQGLGAVGCKLAMWRVSREMYVDRRSPLYGSRLVLMVHDELISELP 601


>gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 658

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 32/151 (21%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------------------------- 724
           + R   +  FY   ++ TGR A     +QN+P                            
Sbjct: 315 DGRAHGLLQFY--GASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLYPS 372

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +   L Q IR AFI     + I ADYS IE R+LA +A        F N  D++   A+ 
Sbjct: 373 VPDTLSQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCATASA 432

Query: 785 IFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           +FGV +EK   + ++R+  K    +  Y  S
Sbjct: 433 MFGVPVEKHGANAELRQKGKIAVLACGYNGS 463


>gi|262342249|gb|ACY54635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          +++    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|311898817|dbj|BAJ31225.1| putative DNA polymerase [Kitasatospora setae KM-6054]
          Length = 562

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 38/246 (15%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P    ++ +++LS++ + +  +       R  R    Y +   +TGR AS       I
Sbjct: 262 DHPAAALLVRYKELSRLHAAHGWAW-QAAWARGGRFRPEYVVGGVVTGRWASRGGGALQI 320

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      + +RRA ++ P   L+ AD +Q+E R+LA ++    L +      D++  +AA
Sbjct: 321 P------RTLRRAVVADPGWLLVVADAAQLEPRVLAALSGDAGLARTAAGG-DLYAALAA 373

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             F  +        R  AK      +YG +   +   L        + ++R   R+P   
Sbjct: 374 SAFHGD--------REQAKLGLLGAMYGQTGGGIGPLL--------NTLRR---RYPDAM 414

Query: 844 EYIEKTKNFVRQNGYVETIFGRRI------HYDEINSPKS---SIRNINERAAI--NAPI 892
            Y+E         G V +  GR          D   +P+S     R+   R     N  I
Sbjct: 415 GYVEAAARTGEDGGVVASRLGRVCPPPSADWLDLTEAPESGEAGGRSARARGRFTRNFVI 474

Query: 893 QGSAAD 898
           QGS AD
Sbjct: 475 QGSGAD 480


>gi|262212113|gb|ACY35673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEV 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y      + + +   K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDVLDKLLGAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|148807504|gb|ABR13556.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 18/175 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LA
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLA 179


>gi|229472307|gb|ACQ72668.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 97/215 (45%), Gaps = 30/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++          +  + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           +QG++A + +R M+    +L+   L    L  IHD
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHD 191


>gi|148807515|gb|ABR13561.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS      ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLT--REKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAH 180


>gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
 gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
          Length = 644

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 57/281 (20%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L + IR AF++ P  + I +D+S IE R++ ++A    + + F  +  I+   A+++F +
Sbjct: 365 LSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKIYEQTASKMFHI 424

Query: 789 NIEKV---SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE-------------AADYI 832
            IE++   SP  R   K  + +  YG +   L +   +   E             A  +I
Sbjct: 425 PIEEITKGSP-YRARGKVASLACQYGGAEGALVSMGALNFVEEEELKGLVQSWRTANPHI 483

Query: 833 KRYFHRFPGIHEYIEKTK---------------------------NFVRQNGYVETIFGR 865
             Y++   G  +   K +                           ++VR    V      
Sbjct: 484 VNYWYEIDGAVKAAVKERKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSE 543

Query: 866 RIHYDEINSPK--SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            + Y+ + + +  + I +   +   N  +Q +A D+   AM+ + K   D      ++  
Sbjct: 544 SVSYEGVGTNRKWTRIESYGAKFCENI-VQATARDVLAEAMLRLEKKGFD------IVCH 596

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           IHDE+V EVPE    T+S   V+ +   C P     +PLK 
Sbjct: 597 IHDEVVLEVPE---GTSSVEEVNEIMAVC-PDWCEGLPLKA 633


>gi|145595499|ref|YP_001159796.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
 gi|145304836|gb|ABP55418.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
          Length = 592

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 34/221 (15%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P    +LE+++L +I + +  +       R  R    Y  A  ++GR A+       I
Sbjct: 282 DHPAAPLVLEYKELYRIWTAHGWAW-QEAWVRDGRFRPEYVPAGVVSGRWATRGGGALQI 340

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      + IRRA ++ P    + AD  Q+E RILA ++  T L      + D++  +A 
Sbjct: 341 P------KVIRRAVVADPGWTFVVADAGQLEPRILAAVSGDTRLAAA-ARAGDLYAALAD 393

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           + FG +        R  AK      +YG +    A  L + R             +P   
Sbjct: 394 DAFGGD--------RARAKVALLGAMYGQTGGSAAPALEVLR-----------RNYPAAF 434

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            Y+E           V +  GR         P  S+  + E
Sbjct: 435 GYVETAARSGEAGELVRSWLGR-------TCPPGSVDRVGE 468


>gi|229472555|gb|ACQ72792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + ++ AD + IE R+L H          +++    
Sbjct: 1   PNLAQVPSDP----RFRELFLPSPGQVMVGADLAGIEFRMLTH------FLARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RGAYIDAIDGLDKLLEAIKK-ASERGFIKALDGRKI---MVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +++   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQHNMKHLNLCCSQLAFVHDE 192


>gi|238060029|ref|ZP_04604738.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237881840|gb|EEP70668.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 554

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 124/324 (38%), Gaps = 50/324 (15%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P +  +LE ++L +I + +  +       R  R H  Y     ++GR A+       I
Sbjct: 253 DHPAVPLVLEHKELYRIWTAHGWAW-RDAWVRGGRFHPEYVPGGVVSGRWATRGGGALQI 311

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      + IRRA ++ P  +L+ AD  Q+E R+LA ++           + D++  +A 
Sbjct: 312 P------KVIRRAVVADPGWRLVVADAGQLEPRVLAAVSGDA-RLAAAGGAGDLYAALAR 364

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           + FG +        R  AK      +YG +       + +P   A   ++R    +P   
Sbjct: 365 DSFGGD--------RPRAKVALLGAMYGQT-----GGMAVP---ALTVLRR---NYPTAF 405

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN--AP---------- 891
            Y+E         G V +  GR                I+  AA++   P          
Sbjct: 406 AYVEAAARTGEAGGLVRSWLGRTCPPGAAGFADGDDAGIDPEAAVDPQGPRARAARSRGR 465

Query: 892 ------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
                 IQ +AA+     + ++  +L       +++   HDE++   P  +    ++ I 
Sbjct: 466 FTRNFVIQATAAEWASTLLATLRTALAGSD--AELVFFQHDEVIVHCPAGQADEVAEAIR 523

Query: 946 HSMEKAC---LPKINLRVPLKVNI 966
            S  +A         +R PL V++
Sbjct: 524 ASGARATALLFGDTPVRFPLDVSV 547


>gi|18640491|ref|NP_570332.1| exonuclease [Synechococcus phage P60]
 gi|18478721|gb|AAL73270.1| exonuclease [Synechococcus phage P60]
          Length = 243

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 40/213 (18%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D   F+YRA       +   D L  +         ++  Q   ++SI   F   FD 
Sbjct: 6   LLIDADYFLYRA------CNTAEDELEFDFETTLVVGDFRKGQQIFRQSI-KDFTTKFDT 58

Query: 68  PAV--------TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             V         FR ++ P YK NR K       +L     A + +  P++   G EADD
Sbjct: 59  DKVLLTFTDSRNFRKDVEPTYKGNRVKRKPCGYKKLK--NWAMKEW--PSVMKPGLEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEK 178
           ++         + F   +IS DKD+ Q+     C +YD        ++H   ++   PEK
Sbjct: 115 VMGILATNGSLDNFV--LISPDKDMAQI----PCRIYD--------LKH---EYTQTPEK 157

Query: 179 ---MVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
              ++ LQ LTGDS D   G PGIG K A  +L
Sbjct: 158 AHELLYLQCLTGDSTDGYSGCPGIGPKRALAIL 190


>gi|32442299|gb|AAP82220.1| DNA polymerase [Podovirus GOM]
          Length = 396

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAFISPPTKKLISADYSQIELR 756
           RVH   +    +TGR+    PN+  +P   +  G + R  +  P   +L+  D + +ELR
Sbjct: 238 RVHGRVNPIGAVTGRMTHSSPNMAQVPASYSPYGTECRECWTVPKGYRLVGIDAAGLELR 297

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH            N  D+H          N +      R  AKT  ++ +YG    +
Sbjct: 298 MLAHYMNDEEYTNEVTNG-DVHT--------TNQKNAGLATRDLAKTFIYAFLYGAGDAK 348

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           +   +   R + A+  +++ +  P +    E+     ++ GY++ + G
Sbjct: 349 IGAIVGGSRRDGAELKEKFLNNTPPLRHLRERVAKSAKR-GYLKGLDG 395


>gi|262212207|gb|ACY35720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342263|gb|ACY54642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEV 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y      + + +   K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDVLDKLLGAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262342233|gb|ACY54627.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 167

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 91/191 (47%), Gaps = 30/191 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAA-----DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++     ++  S+AA     + 
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I    ++SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNYC 156

Query: 892 IQGSAADITRR 902
           +QG++A + +R
Sbjct: 157 LQGNSAILAKR 167


>gi|148807579|gb|ABR13590.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  + I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAEMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S + LR+LAH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLXLRMLAH 180


>gi|332800352|ref|YP_004461851.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1]
 gi|332698087|gb|AEE92544.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1]
          Length = 652

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 46/260 (17%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+++D+ L++        +   L     DL+G + N +SP QL     T LK     +  
Sbjct: 204 GVRVDRQLVENAICCDGIHQKELMAEAIDLTGLE-NPNSPAQLK----TWLKGNHNIQVD 258

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVHTFY 703
           +       + L +IN   +P +  +LE RQ +SK      +++   +  + R + +  +Y
Sbjct: 259 SLSKANVEELLNKIN---HPTVTRVLELRQDMSKTSVRKYEAMDRAMGGDGRIRGLLQYY 315

Query: 704 SLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRR 735
              +  TGR A     +QN+P                            +   L Q IR 
Sbjct: 316 --GANRTGRWAGRLVQVQNLPRNNMKDLDLARKLLLAGDYESLELLFDSVPDVLSQLIRT 373

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE---K 792
           AF+  P  + I +D+S IE R++A +A    +   F+    I+ M A+++FGV +E   K
Sbjct: 374 AFVPSPGHRFIISDFSAIEARVIAWLAGEKWVVDTFKGHGKIYEMTASKMFGVPMELIVK 433

Query: 793 VSP--QMRRHAKTINFSIIY 810
            +P  ++R+  K    +  Y
Sbjct: 434 GNPEYELRQKGKVAVLACGY 453


>gi|9634020|ref|NP_052094.1| 5B protein [Yersinia phage phiYeO3-12]
 gi|6599011|emb|CAB63615.1| 5B protein [Yersinia phage phiYeO3-12]
          Length = 384

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 113/304 (37%), Gaps = 47/304 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  +P +++  G++ R AF +         K  + A  
Sbjct: 95  KIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGI 154

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    + ++  +I   N        R +AKT  +  
Sbjct: 155 DASGLELRCLAH------FMARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGF 208

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I                +I   +    
Sbjct: 209 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVNSSAWIGGEQKVQW 268

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 269 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLIEK 316

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L          +  IHDE+      EE+      +     +      N R  L    K+
Sbjct: 317 GLKHGWDGDFAQMGWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEHWNFRCRLDTEGKI 376

Query: 969 SNNW 972
             NW
Sbjct: 377 GPNW 380


>gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
 gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
          Length = 1461

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 387 IGSASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
           +GSASF   T  +M A  S     A     +KD        I++D+      D  G+  +
Sbjct: 691 LGSASFGATTHGSMAALGSGDAGSAAGGPVRKD-------RIWVDIWSEVELDEEGRPIM 743

Query: 446 TKE---------ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYV 495
                       IL   K+FFE+E   K+ HN  +D+ VL   GI   GF  D + M+ +
Sbjct: 744 DGRYVRLKPHHPILDEFKRFFEDESVKKVWHNYGFDRHVLENMGICCAGFGGDTLHMARL 803

Query: 496 LDSGRSS 502
            D+ RS 
Sbjct: 804 ADASRSG 810



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 691  HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISA 748
            +IN  T R+     +   M   ++++ PNLQN P       K+RRAF +       L+ A
Sbjct: 1385 NINTETGRLSARRHVCCEMRLHISAVVPNLQNQPALEKDRYKVRRAFTADTEGGNTLVVA 1444

Query: 749  DYSQIELRILAHI 761
            DY Q+ELRILAH+
Sbjct: 1445 DYGQLELRILAHM 1457


>gi|32128451|ref|NP_858986.1| DNA polymerase lacking N-terminal exonuclease domain [Xanthomonas
           phage Xp10]
 gi|31788514|gb|AAP58706.1| 38L [Xanthomonas phage Xp10]
          Length = 794

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 128/320 (40%), Gaps = 57/320 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRI 757
           VH    + +T+TGRL+S  PNLQN+P K D  + ++  F+S  P   ++ +D++ +E+ +
Sbjct: 441 VHHQLQMVNTVTGRLSSALPNLQNLP-KGDKSE-VKTLFVSRFPGGFIVQSDFTALEIYV 498

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM--------------RRHAKT 803
             +++    L       LD+H    A+  GV+ + V  +               R  AK 
Sbjct: 499 QGNLSGDIALIADLRAGLDMHCKRLAQKEGVSYDYVFERAKDKKHIEYIVWNSKRSKAKG 558

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN------- 856
            +F   YG     +A    +   E  + I+     +PGI EY ++T   + +N       
Sbjct: 559 FSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNLIPSKMY 618

Query: 857 ---------------GYVETIFGRRIHYDEINSPKSSIRNINERAAI----------NAP 891
                           Y  T  G+R    +  +PK     + ER  +          N P
Sbjct: 619 IASSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKW----LWEREGVQLTFSSTTTKNYP 674

Query: 892 IQGSAADITRRAM-ISVHKSLEDHKLATKMLL--QIHDELVFEVPEEEITTASQIIVHSM 948
           +QG+  +  + AM + V +         + L+   +HD    +    E+   S  ++H+ 
Sbjct: 675 VQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYID-SAPEVAKESMALLHAC 733

Query: 949 EKACLPKINLRVPLKVNIKV 968
            +     I  +   K++I V
Sbjct: 734 MEEASRYIESQFAWKLHIDV 753


>gi|323359890|ref|YP_004226286.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276261|dbj|BAJ76406.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 499

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 32/224 (14%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P++  ++ +++L ++ +    +  +    R  R    Y  A  +TGR AS       I
Sbjct: 180 DHPVVAPLVSYKKLMRLYTANGWTWMSEW-VRDGRFRPVYVPAGVVTGRWASSGGGALQI 238

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      +++R A  + P   L++AD +Q+E R+LA +A+ T L                
Sbjct: 239 P------RQLRVAVRADPGWTLVTADVAQLEPRVLAAMARDTALADAARRR--------- 283

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           +++   +E  +   R  AK      +YG +             E+   + R    FP   
Sbjct: 284 DLYSGVVEAGAVATRAEAKIAMLGAMYGATT-----------GESGRLLPRLRRTFPRAM 332

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
             ++       + G V T  GR         P  + R +  RA 
Sbjct: 333 ALVDHAARVGEEGGVVSTWLGR-----TSPGPGEAWRAVQSRAG 371


>gi|158345163|ref|YP_001522870.1| putative DNA polymerase [Enterobacteria phage LKA1]
 gi|114796459|emb|CAK24997.1| putative DNA polymerase [Pseudomonas phage LKA1]
          Length = 791

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 19/159 (11%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISADYSQIELR 756
           +H   +L +T TGRL+S  PNLQN+P   D   +++  F S      ++I  DYS +E+ 
Sbjct: 454 IHHSLNLCATATGRLSSSYPNLQNLP--RDGTSRVKEMFESRFGTAGRIIEVDYSALEVV 511

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV---------------SPQMRRHA 801
           +LA ++    L +      D+H +  A   G   E+V                 QMR   
Sbjct: 512 MLAALSGDENLLEQLVKGTDMHCLRLAAKLGEPYEEVLHKAVENQAHPEHKRYKQMRTDI 571

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           K  +F+  YG S   +A    +    A ++++     FP
Sbjct: 572 KPPSFAAQYGASAEGIAYATGVSVEYAKEFLETEARLFP 610


>gi|239942253|ref|ZP_04694190.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239988720|ref|ZP_04709384.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291445710|ref|ZP_06585100.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291348657|gb|EFE75561.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 563

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 125/316 (39%), Gaps = 74/316 (23%)

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMT 710
           T   +LE++   D+P ++ ++ +++L +I + +  S L + +  R  R    Y    T++
Sbjct: 244 TRRWELEEL---DHPAVEPLIAYKKLYRIWTAHGWSWLQDWV--REGRFRPEYQPGGTVS 298

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR  +       IP      + IR+A ++ P  +L+ AD  Q+E R+LA I++   L +V
Sbjct: 299 GRWTTNGGGALQIP------KVIRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEV 352

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             +  D+++ ++   F  +        R HAK      +YG +              + D
Sbjct: 353 AGHDGDLYKALSDRAFSGD--------REHAKLALLGAVYGQT--------------SGD 390

Query: 831 YIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            +K       RFP    Y++       +   V T  GR        SP       +E A 
Sbjct: 391 GLKNLAALRRRFPLAVAYVDDAARAGEEGRVVRTWLGR-------TSPPVVSAGQDEEAG 443

Query: 888 I--NAP----------------------------IQGSAADITRRAMISVHKSLEDHKLA 917
           I   AP                            +QGSAAD     +  + ++L +  L 
Sbjct: 444 IPQEAPEGAGDAGGPAGSGGGTARARGRFTRNFVVQGSAADWALLLLAGLRRTLFEQGLR 503

Query: 918 TKMLLQIHDELVFEVP 933
            +++   HDE++   P
Sbjct: 504 AQLVFFQHDEVIVHCP 519


>gi|148807541|gb|ABR13573.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807546|gb|ABR13575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 10/143 (6%)

Query: 620 KFNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           ++N+ S KQ+ + L    +KF    +T+ G      + LE I   D P  K I E+  L 
Sbjct: 45  EYNVGSRKQIAERLEGVGVKFK--LQTEKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQ 99

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K ++   DS   H  ++  RVH        +TGR+    PNL  +  +    G++ R  +
Sbjct: 100 K-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVASVSAPYGRECRSFW 156

Query: 738 ISPPTKKLISADYSQIELRILAH 760
             P   KLI  D S +ELR+LAH
Sbjct: 157 CVPEGHKLIGCDASGLELRMLAH 179


>gi|215509404|gb|EEC18857.1| DNA polymerase gamma, putative [Ixodes scapularis]
          Length = 1055

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 114/272 (41%), Gaps = 39/272 (14%)

Query: 706 ASTMTGRLASLEPNL--QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL----- 758
           A T+T R  ++EP     +   K  +G +++    +P    ++ AD    EL I      
Sbjct: 698 AGTVTRR--AVEPTWLTASNAYKDRVGSELKSMVQAPKGYHIVGADVDSQELWIASILAD 755

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PF-- 815
           AH A++     +   +L  ++ V  ++       V    R  AK IN++ IYG   PF  
Sbjct: 756 AHFAEMHGCTAIGWMTLQGNKAVGTDMHSRTATSVGIS-RDQAKVINYARIYGAGQPFAQ 814

Query: 816 RLATQL--RIPRSEAADYIKRYFHRFPGIH----EYIEKTKNFVR------QNGYVETIF 863
           RL  Q   R+   EA+   K+ + +  G+     E +E  + FVR      + G    +F
Sbjct: 815 RLLMQFNHRLDAQEASTKAKKMYAQTKGVRVAVPEVVEGQQVFVRGKRKVWEGGSESHMF 874

Query: 864 GRRIHYDEINSPKSSIRNIN-----ERAA---------INAPIQGSAADITRRAMISVHK 909
            +     +   P++ +         E AA         IN  +Q SA D     +I++  
Sbjct: 875 NKLEAIADSEEPRTPVLGCRISRALEPAAVDTNFFNSRINWVVQSSAVDYLHLMLITMRW 934

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
            ++D+ +  +  + IHDE+ F V  E+   A+
Sbjct: 935 LMDDYAIQGRFAVSIHDEVRFLVASEDRYRAA 966


>gi|9634019|ref|NP_052093.1| DNA polymerase [Yersinia phage phiYeO3-12]
 gi|6599010|emb|CAB63614.1| DNA polymerase [Yersinia phage phiYeO3-12]
          Length = 704

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 113/304 (37%), Gaps = 47/304 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP------PTKKLISA-- 748
           ++H   +    +TGR     PNL  +P +++  G++ R AF +         K  + A  
Sbjct: 415 KIHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          F+N    + ++  +I   N        R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI--------------HEYIEKTKNFVR 854
           +YG    ++   +   +    +  K++    P I                +I   +    
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVNSSAWIGGEQKVQW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  +I   + L + 
Sbjct: 589 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIIKTEEMLIEK 636

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L          +  IHDE+      EE+      +     +      N R  L    K+
Sbjct: 637 GLKHGWDGDFAQMGWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEHWNFRCRLDTEGKI 696

Query: 969 SNNW 972
             NW
Sbjct: 697 GPNW 700


>gi|148807603|gb|ABR13601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 18/176 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  + I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAEMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+ AH
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMPAH 180


>gi|167600414|ref|YP_001671914.1| 5'-3' exonuclease [Pseudomonas phage LUZ24]
 gi|161168277|emb|CAP45442.1| 5'-3' exonuclease [Pseudomonas phage LUZ24]
          Length = 276

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 63/157 (40%), Gaps = 40/157 (25%)

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL--------------------- 147
           AI   G EADD +        +EG   T  S DKD+ Q+                     
Sbjct: 86  AITFHGIEADDWLGIR---GTEEGANFTACSRDKDIRQVPGCYHYSWPCGDSQPELGPFQ 142

Query: 148 ------VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL--QALTGDSIDNIPGIPGI 199
                 VS +  +Y   K +K         W +       L  Q L GDS+DNIPG+PG 
Sbjct: 143 VDGLGRVSASWRMYGVKKPQK--------SWKLEGNGTAFLYGQLLVGDSVDNIPGLPGT 194

Query: 200 GYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           G KTAA LL +  +  ++    +   Q+K  +N  EY
Sbjct: 195 GPKTAADLLGKLSSERDLFAACAYAYQQKYGDNWKEY 231


>gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
 gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
          Length = 644

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 37/180 (20%)

Query: 668 IKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +  +LE RQL   S +K   A       + R + +  FY   +  TGR A     +QN+P
Sbjct: 275 LSEVLELRQLLAKSSVKKYTAMENAVCTDGRARGLLQFY--GANRTGRFAGRLIQVQNLP 332

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       I   L + IR AF+     K I AD+S IE R
Sbjct: 333 QNHLSDLEQARRLVRGGHFDALEILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEAR 392

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV---SPQMRRHAKTINFSIIYGIS 813
           ++A +A  T   +VF     I+   A+++F V +E+V   SP +R+  K    ++ YG S
Sbjct: 393 VIAWLAGETWRNEVFATHGKIYEASASQMFKVPLEEVTKGSP-LRQKGKIAELALGYGGS 451


>gi|42562521|ref|NP_174698.2| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|332193585|gb|AEE31706.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 264

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLP--LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           R E+ P YKA+R         + P   V    +   +P + I+G EADD++AT    A +
Sbjct: 125 RRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPVVRIEGHEADDVVATLMEQAVQ 184

Query: 131 EGFAVTIISTDKDLMQLVS 149
            G+   I S DKD  QL+S
Sbjct: 185 RGYRAVIASPDKDFKQLIS 203


>gi|289624730|ref|ZP_06457684.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 517

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 117/265 (44%), Gaps = 34/265 (12%)

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           ++L  R+++K +S       N I    +R++       ++T R+   +P+LQN+      
Sbjct: 243 DLLRLRKIAKSRSVL-----NAIPLSQKRIYPIVDCFGSITSRIYFKDPSLQNLA----- 292

Query: 730 GQKIRRAFISPPTKKLIS-ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
             K  R  + P   +  S  DY Q E  I+A ++    L +++ +  D+++ VA +IF  
Sbjct: 293 --KHHRDILVPDEGRAFSYVDYEQYEAGIMAALSGDEKLLELYADG-DLYKQVANDIFE- 348

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD--YIKRYFHRFPGIHEYI 846
                    R+ AK +  S  YG+    L   +       AD    K +F +F    E+ 
Sbjct: 349 -----GEGRRKEAKRLFLSYAYGMKNRHL---IDAAFGYGADRRATKTFFKQFGKFEEWK 400

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
               +   ++  + T+ G  +  D        + +  +R+A++  +QG+A+ I +++++ 
Sbjct: 401 ISVHDSFGKDQRIGTVLGNYLKRDRTG----PLTDKEKRSAVSQLVQGTASLIFKKSLMK 456

Query: 907 VHKSLEDHKLATKMLLQIHDELVFE 931
           +       +    + + +HD ++FE
Sbjct: 457 LR-----DEAGAGLKVPMHDAVLFE 476


>gi|282866382|ref|ZP_06275427.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
 gi|282558778|gb|EFB64335.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
          Length = 568

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 44/241 (18%)

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMT 710
           T   +LE++   D+P ++ ++ +++L ++ + +  S L + +  R  R    Y    T++
Sbjct: 244 TRRWELEKV---DHPAVEPLIRYKKLYRVWTAHGWSWLTDWV--REGRFRPEYQPGGTVS 298

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR  +       IP      + IR+A ++ P  +L+ AD  Q+E R+LA I++   L +V
Sbjct: 299 GRWTTNGGGALQIP------RVIRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEV 352

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             +  D++  ++   F  +        R HAK      +YG +              + D
Sbjct: 353 AGHEGDLYTALSDRAFHGD--------RDHAKIALLGAVYGQT--------------SGD 390

Query: 831 YIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            +K       RFP    Y+++      +   V T  GR        SP ++    +E A 
Sbjct: 391 GLKNLAALRRRFPHAVAYVDEAAKAGEEGRLVRTWLGR-------TSPPAAGAGESEEAG 443

Query: 888 I 888
           I
Sbjct: 444 I 444


>gi|281306676|ref|YP_003345482.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
 gi|271277981|emb|CBH51587.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
          Length = 789

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 121/300 (40%), Gaps = 53/300 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPI--KTDLG---QKIRRAFIS--PPTKKLISADYS 751
           +H   ++A+T+T RL+S +PNLQN+P   + D G    +++  F S       +I  DY+
Sbjct: 452 IHHSLNVAATITARLSSSDPNLQNLPRSDEDDDGVAKSRVKEMFTSRFGDDGVIIEVDYT 511

Query: 752 QIELRILAHIAKITPLYQVFENSLDIH--RMVAA------EIFGVNIEKVSP------QM 797
            +E+ +LA ++    L +  +N  D+H  R+ A       EI  +  +K  P      Q 
Sbjct: 512 ALEVVMLAALSGDQALLKHLQNGTDMHCLRLAAKLKRPYEEILAIAKDKHHPEHNSIKQQ 571

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP----------------- 840
           R   K  +F+  YG S   +A    +    A +++      FP                 
Sbjct: 572 RTDIKPPSFAAQYGASASGIAFATGVSLEYATEFLATEARLFPRAIAFRDVVRAEVERTG 631

Query: 841 ----GIHEYIEKTKNF-VRQNGYVETIFGRRIHYDEIN----SPKSSIRNINERAAINAP 891
               G+    +   NF V + GY +   G    + + +      +  +         N  
Sbjct: 632 ALPTGLMREQDDAGNFRVYRRGYYQADGGTCYSFRQFDVWDAEARKRVMGFKPTQIANYW 691

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATK---MLLQIHDELVFEVPEE---EITTASQIIV 945
            QG +  +   +   V + L  H +      M+  +HD L F+V ++   E+  A++ I+
Sbjct: 692 CQGESGYLMTLSAGRVMRWLIQHPMFMSKIFMINNVHDALYFDVHKDYLKEVAAAAKAIM 751


>gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 662

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 35/179 (19%)

Query: 668 IKNILEWRQ-LSKIKSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           ++ +LE RQ L+K       ++   +  + R + +  FY   +  TGR A     LQN+P
Sbjct: 295 LQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFY--GANRTGRWAGRLIQLQNLP 352

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       +   L Q IR AFI     +L  +D+S IE R
Sbjct: 353 QNHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFSAIEAR 412

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           ++A  A      +VF +  DI+   A+++F V +EK  V+  +R+  K    ++ YG S
Sbjct: 413 VIAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGS 471


>gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2]
 gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2]
          Length = 625

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 94/462 (20%), Positives = 175/462 (37%), Gaps = 72/462 (15%)

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYER---LDKPMIDVVSQMEIT-----------G 587
           A+ ++ + L LW +L    I ++L H ++    +D+     V +  IT           G
Sbjct: 187 AMADTVMTLALWPVLYEAAIDQQLDHPFQSRGCVDRAEAQYVVERMITELRIVGTRVAKG 246

Query: 588 IQIDQDLLKQV--SAEISKNLLSLEENIYDLSGEKFNLSSP-KQLGDILFTKLKFPSGAK 644
           + +D+  L++   S E  +   +       L G K   S   + L  +      +P   +
Sbjct: 247 VNVDRGALERYADSVEDDRRRATATLAAVGLEGGKGKESKIIEYLASVGHLPADWP---R 303

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR------TQR 698
           T +G+ K T   +E +    +PI          ++    + D L  ++ K       T R
Sbjct: 304 TPSGKLKATKDLMEGLG---DPIAT--------AQRTLAHMDQLTGYLEKVEAQSQVTGR 352

Query: 699 VHTFYSLA-STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            H   S+A +  TGR++   P LQ            R    +   +++ S D+SQIE   
Sbjct: 353 CHPQISVAGAAATGRMSISSPPLQQ------FSGPARAILTADEGQRMWSVDWSQIEPVT 406

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +A +A  +     F    D++  +   +    IE      R+ AK +    +YG    ++
Sbjct: 407 MALLAGDSEFLAPFAAGADLYEPI---MRAAGIE------RKVAKVLLLQTMYGSGAAKI 457

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A  +      A    ++ F   P   +++ + +     +G + T   R +  D     K 
Sbjct: 458 AETIGHTPESAVQLRRQMFAAMPESSKFMSRVQTLGDTHGKIVTAGKRVLDVDSGFGYK- 516

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE-- 935
                    A N   QG+A DI    +I     L+   L   ML  +HDE++   P E  
Sbjct: 517 ---------ATNYICQGTALDILTETIIE----LDRRGLGDSMLWWMHDEILVSGPPEVA 563

Query: 936 -EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            E+    +I+   M     P    ++  +  +++   W E+ 
Sbjct: 564 REVQEVMEIVPDFMR--TWPGHIDKLRTECEVRIGAAWAEKG 603


>gi|47934816|gb|AAT39846.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 126

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 7/110 (6%)

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T + LE I   D P  K I E+  L K ++   DS   H  ++  RVH        +TG
Sbjct: 15  STRRVLEGI---DIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVITNGAVTG 68

Query: 712 RLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           R+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH
Sbjct: 69  RMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAH 118


>gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
 gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
          Length = 646

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 32/151 (21%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------------------------- 724
           + R + +  FY   +  TGR +     LQN+P                            
Sbjct: 307 DGRARGMFQFY--GANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSGNFEAVKLLYED 364

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +   L Q IR AFI     + + AD+S IE R++A  A      +VF    DI+   A++
Sbjct: 365 VPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWRQEVFAKGGDIYCASASQ 424

Query: 785 IFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           +F V +EK  ++  +R+  K    ++ YG S
Sbjct: 425 MFKVPVEKHGINGHLRQKGKIAELALGYGGS 455


>gi|262342151|gb|ACY54586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 30/191 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +D   + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVP--SD--HRFRELFIPTPGQVMVGADLAGIELRMLSH------FLARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK---- 833
             ++  +I  VN +K+    R+  KT+  + +YG    ++      P S  A   K    
Sbjct: 51  DILLNGDIHQVNADKIGIS-RKLVKTVTNAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEI 109

Query: 834 --RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEVIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRR 902
           +QG++A + +R
Sbjct: 157 LQGNSAILAKR 167


>gi|262212195|gb|ACY35714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQFMVGADLAGIELRVLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKR-- 834
             ++  +I  VN +K+    R   KT+ ++ +YG    ++     ++  S+AA+   +  
Sbjct: 51  DILLNGDIHQVNADKIGIS-RELVKTVTYAFLYGAGDEKIGHSYDKLLPSKAAEKKGKEI 109

Query: 835 ---YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G  + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAYIEAIDGRDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|47934638|gb|AAT39757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+H + +   T+TGR+    PN+  IP     G + R  F+ P  +KL+  D S +ELR+
Sbjct: 129 RIHGYVNSNGTVTGRMTHSNPNMAQIPS----GAEYRSCFVVPQGRKLVGVDASGLELRM 184

Query: 758 LAHIAKITPLYQVFENSLDIH 778
           LAH  +     Q   +  DIH
Sbjct: 185 LAHYMRDDAFTQEILDG-DIH 204


>gi|262342113|gb|ACY54567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 51.2 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 36/219 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLI--SADYSQIELRILAH-IAKITPLYQVFENS 774
           PNL  +P       + R  FI  P+K L+   AD S IELR+L+H +A+       F+  
Sbjct: 1   PNLAQVPSDG----RFRELFI--PSKGLVMCGADLSGIELRMLSHYLAR-------FDGG 47

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK- 833
                ++  +I  VN +K+    R+  KT+ ++ +YG    ++        S  A   K 
Sbjct: 48  RYAEILLNGDIHQVNADKIGIS-RKQVKTVTYAFLYGAGDEKIGYSYDAQLSSTAAKRKG 106

Query: 834 -----RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                 Y     G+ + +        + G+V++I GR+I   +++SP           A+
Sbjct: 107 KEIRSAYVSAVDGLGDLLTAVAK-AAERGFVKSIDGRKI---KVDSPHK---------AL 153

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           N  +Q  A  + ++ M    + +++ +L    L  IHDE
Sbjct: 154 NYLLQSGAGVVAKKWMCINQEHIKELQLCCSQLAFIHDE 192


>gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 125/298 (41%), Gaps = 53/298 (17%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLE--ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           GI+IDQ L+   +A   +N+   +  +   +L+G   N +SP QL D L  +     G K
Sbjct: 204 GIRIDQQLVN--NAIKCQNVFHDQYLQTAKELTGLA-NPNSPLQLKDWLQQQ-----GIK 255

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHT 701
           T +    + AQ L Q   G    +  +L  RQL   S +K   A       + R   +  
Sbjct: 256 TNSLSKASVAQ-LLQTTTG---TVHQVLALRQLLSKSSVKKYQAMQKAMCQDGRVHGLLQ 311

Query: 702 FYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKI 733
           FY   +  TGR A     +QN+P                            +   L Q I
Sbjct: 312 FY--GANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPALAMLYDSVPDVLSQLI 369

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK- 792
           R AFI         AD+S +E R++A ++      + F  + DI+   A+++FGV + K 
Sbjct: 370 RTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIYCASASQMFGVPVVKH 429

Query: 793 -VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
            ++ ++R+  K    ++ YG S   L    AT+L +   E    ++ + +  P I ++
Sbjct: 430 GINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDELPPLVQMWRNASPHIVQF 487


>gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 646

 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 32/151 (21%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------------------------- 724
           + R + +  FY   +  TGR +     LQN+P                            
Sbjct: 307 DGRARGMFQFY--GANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSGNFEAVELLYED 364

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +   L Q IR AFI     + + AD+S IE RI+A  A       VF    DI+   A++
Sbjct: 365 VPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWRQDVFAKGGDIYCASASQ 424

Query: 785 IFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           +F V +EK  ++  +R+  K    ++ YG S
Sbjct: 425 MFKVPVEKHGINGHLRQKGKIAELALGYGGS 455


>gi|294337982|emb|CBJ93820.1| Putative phage RNase H [Campylobacter phage CP220]
 gi|294338177|emb|CBJ94214.1| Putative phage RNase H [Campylobacter phage CPt10]
          Length = 352

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 27/207 (13%)

Query: 7   LFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNA--IAG-FCNMLWKLLQNSRKESIASHF 61
           + L D SS I+RA + +   +   K DG  +    I+G    ++ +LL+N R   +  + 
Sbjct: 1   MILYDLSSLIHRALHTSIKQMNPHKKDGKYITEEFISGTIFRIIEELLENYRLYRVKYNT 60

Query: 62  AVIF--DYPAVTFRNEIYPDYKANRP--------KIPEMLLPQLPLVRLATQAFGIPAIE 111
            VI   D+    +R  +YPDYKA R            E+      L+R+        AI 
Sbjct: 61  MVICIDDHSVPYWRKSLYPDYKAQRKTQREESEVNFKEVYKHINILIRILNDYTPFKAIG 120

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK 171
           + G EADDII   T    K   ++ I+S DKD  QL      L D  +   I       K
Sbjct: 121 VPGAEADDIIGVLTRKFCKAE-SILILSPDKDFKQLHK----LGDIKQYSAI-----TNK 170

Query: 172 WGI--PPEKMVCLQALTGDSIDNIPGI 196
           W +   PE    +    GD+ DN+P +
Sbjct: 171 WVVNDDPEGWERIHCCLGDAADNVPRV 197


>gi|325272837|ref|ZP_08139174.1| phage exonuclease, putative [Pseudomonas sp. TJI-51]
 gi|324102042|gb|EGB99551.1| phage exonuclease, putative [Pseudomonas sp. TJI-51]
          Length = 198

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 23/201 (11%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           ++QN   ++ A    ++F    V +R  + P YK NR K  + LL +  L   A + F  
Sbjct: 1   MVQNLIDKTGADEALLVFS-DKVNWRKTVLPTYKHNRNKTVQPLL-RAHLTAWAQETF-- 56

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL----VSPTTCLYDTVKEEKI 163
           P++     E DD+         K G  + + S DKD   +     +  T  +  V EE+ 
Sbjct: 57  PSVTKPTLEGDDVCGILLTRTRKFGEEIVVASIDKDFKTVPGHHYNFNTDTFFEVTEEEA 116

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D  H+              Q L GD+ D   G PGIG   A  LL +    E ++  A+ 
Sbjct: 117 DYWHL-------------YQTLMGDTTDGYTGCPGIGPVAAKRLLDKSPTWETVV--AAF 161

Query: 224 IKQKKRRENILEYAETARLSR 244
            K     E  L  A  AR+ R
Sbjct: 162 DKAGLCEEEALVQARVARILR 182


>gi|328883338|emb|CCA56577.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 571

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 117/298 (39%), Gaps = 60/298 (20%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           D+P ++ ++ +++L +I + +  S L + +  R  R    Y    T++GR  +       
Sbjct: 262 DHPAVEPLIAYKKLYRIWTAHGWSWLQDWV--RDGRFRPEYLPGGTVSGRWTTNGGGALQ 319

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP      + IRRA ++    +L+ AD  Q+E R+LA I++   L +V  +  D++  ++
Sbjct: 320 IP------KVIRRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHPDDLYTRLS 373

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF---HRF 839
              F  +        R HAK      IYG +              + D +K       RF
Sbjct: 374 DRAFSGD--------RDHAKIALLGAIYGQT--------------SGDGLKNLAALRRRF 411

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGR-------RIHYDEINSPKSSIRNINE-------- 884
           P    Y+++      +   V T  GR           +E   P+       E        
Sbjct: 412 PRAVAYVDEAAKAGEEGRLVRTWLGRTSPRAVGAGEAEEAGLPQEGGEQPAEEGEFVPGY 471

Query: 885 ---------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
                    R   N  +QGSAAD     + ++ +SL   +   +++   HDE++   P
Sbjct: 472 ASGNARARGRFTRNFVVQGSAADWALLMLAALRRSLAGMR--AELVFFQHDEVIVHCP 527


>gi|289705267|ref|ZP_06501666.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289558017|gb|EFD51309.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 578

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 99/268 (36%), Gaps = 35/268 (13%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R H  Y +   +TGR A+       +P        +R A  + P   L  AD SQ+E RI
Sbjct: 306 RFHAAYLVGGVVTGRWAAHGGGAMQVPAG------VRDAVRADPGWTLTVADASQVEPRI 359

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LA +A    L +    + D++R VA +             R  AK      +YG +    
Sbjct: 360 LAAMAADEALARA-GTTPDLYREVAEQGRAAGTALAD---RGRAKIALLGAMYGSTTGDS 415

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR----------- 866
           A  +         +++R + R  G+   +E+  +     G V T  GR            
Sbjct: 416 AALM--------PHLRRLYPRAIGL---LERAASVGEGGGQVSTWLGRWSPAPGRKWQES 464

Query: 867 ---IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
              +      S     R    R   N  +QG+AA+     M  + + L    + T+++  
Sbjct: 465 VSDVGTQAAESAARRRRRSQGRFTRNFVVQGTAAEWALCWMGEIRRRLRSAGMRTELVFF 524

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKA 951
           +HDE+V   P  E      ++  S   A
Sbjct: 525 VHDEVVLHGPATEAEAVRTVVAESASAA 552


>gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul]
 gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul]
          Length = 693

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 14/126 (11%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L   +R A  +P   + ++ D S IE  ++A +A   PL  VF      +R  A  ++GV
Sbjct: 381 LAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPLLNVFREGRCAYREFATRLYGV 440

Query: 789 NIEKVSPQMRRHAKTINFSIIY--------------GISPFRLATQLRIPRSEAADYIKR 834
              +V+ QMR  +K       Y              G+  +     + + R EA D +K 
Sbjct: 441 EYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGLWGYAENMGIDMSRQEAHDSVKM 500

Query: 835 YFHRFP 840
           Y   +P
Sbjct: 501 YREAYP 506


>gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
          Length = 646

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 33/157 (21%)

Query: 668 IKNILEWRQ-LSKIKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +K +L+ RQ LSK      +++   + K  R + +  FY   +  TGR +      QN+P
Sbjct: 270 VKRVLKLRQELSKTSVKKYEAIKRAVCKDERVRGLLKFY--GANRTGRWSGKLVQTQNLP 327

Query: 725 IKTD----------------------------LGQKIRRAFISPPTKKLISADYSQIELR 756
             T                             L Q IR AFI     + I +D+S IE R
Sbjct: 328 RNTMDNLEAARMLLKSGNYEMLEVLFYSVPEVLSQLIRTAFIPAFNSRFIVSDFSAIEAR 387

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           ++A +A    +   F+ S  ++ M A+ +FGV IEK+
Sbjct: 388 VIAWLAGEKWVIDTFKGSGKVYEMAASRMFGVPIEKI 424


>gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
 gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
          Length = 644

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 110/280 (39%), Gaps = 55/280 (19%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L + IR AF++ P  + I +D+S IE R++ ++A    + + F  +  I+   A+++F +
Sbjct: 365 LSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKIYEQTASKMFHI 424

Query: 789 ---NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE-------------AADYI 832
               I K SP  R   K  + +  YG +   L +   +   E             A  +I
Sbjct: 425 PIGEITKGSP-YRARGKVASLACQYGGAEGALISMGALNFVEEEELKGLVQSWRTANPHI 483

Query: 833 KRYFHRFPGIHEYIEKTK---------------------------NFVRQNGYVETIFGR 865
             Y++   G  +   K +                           ++VR    V      
Sbjct: 484 VNYWYEIDGAVKAAVKERKMTKVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFGSE 543

Query: 866 RIHYDEINSPKSSIRNINERAAINAPI-QGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
            + Y+ I + +   R  +  A     I Q +A D+   AM+ + K   D      ++  I
Sbjct: 544 SVSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFD------IVCHI 597

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           HDE+V EVPE    T+S   V+ +   C P     +PLK 
Sbjct: 598 HDEVVLEVPE---GTSSVEEVNGIMAVC-PDWCEGLPLKA 633


>gi|167583608|ref|YP_001671798.1| DNA polymerase-like protein [Enterobacteria phage phiEco32]
 gi|164375446|gb|ABY52854.1| DNA polymerase-like protein [Enterobacteria phage phiEco32]
          Length = 614

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 26/255 (10%)

Query: 737 FISPPTKKLISADYSQIELRILAH-------------IAKITPLYQVFEN----SLDIHR 779
           +I    +  +  D S +ELR+LAH             I +  P  +        S  ++R
Sbjct: 363 YIPAGKEVFLGYDGSGLELRMLAHYLIKECRDMLAEAIEENNPAKKALAERGLASAIMYR 422

Query: 780 --MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
             ++  +I   N +      R +AKT  ++  YG    +L + +     E +    R+  
Sbjct: 423 DILLEGDIHSHNQKLAGLPTRDNAKTFIYAFNYGAGDAKLGSIVGGGADEGSVMRARFLA 482

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
             P I   I++      Q GY+  + GR+I      + K  +       A+N  +Q + A
Sbjct: 483 ENPCIAILIDRMTEKAAQ-GYLIGVDGRKITMRRDATGKVMVHK-----ALNTLLQCAGA 536

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
            + + AM+ ++K +E  K+    ++ +HDE  F V   ++    +     ++KA    +N
Sbjct: 537 VVMKYAMMFLNKWIEKDKVRCAKVIDMHDEGQFSVNRNDVQKLKEHTELCVKKAG-EYLN 595

Query: 958 LRVPLKVNIKVSNNW 972
           +  PL  + ++  NW
Sbjct: 596 MECPLASDCQIGLNW 610


>gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
 gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
          Length = 644

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 123/298 (41%), Gaps = 53/298 (17%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLE--ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           GI+IDQ L+   +A   +N+   +  +    L+G   N +SP QL D L  +     G K
Sbjct: 204 GIRIDQQLVN--NAIKCQNVFHDQYLQTAKKLTGLA-NPNSPLQLKDWLHQQ-----GIK 255

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHT 701
           T +    + AQ L Q   G    +  +L  RQL   S IK   A       + R   +  
Sbjct: 256 TDSLSKASVAQ-LLQTTTG---TVHQVLALRQLLSKSSIKKYQAMQKAMCQDGRVHGLLQ 311

Query: 702 FYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKI 733
           FY   +  TGR A     +QN+P                            +   L Q I
Sbjct: 312 FY--GANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPALAMLYDSVPDVLSQLI 369

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK- 792
           R AFI         AD+S +E R++A ++      + F  + DI+   A+++FGV + K 
Sbjct: 370 RTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIYCASASQMFGVPVVKH 429

Query: 793 -VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
            ++ ++R+  K    ++ YG S   L    AT L +   E    ++ + +  P I ++
Sbjct: 430 GINGELRQKGKIAELALGYGGSIGALKAMGATNLGLTDDELPPLVQMWRNASPHIVQF 487


>gi|27476023|ref|NP_775225.1| DNA polymerase1 [Pseudomonas phage PaP3]
 gi|27414453|gb|AAL85539.1| DNA polymerase1 [Pseudomonas phage PaP3]
          Length = 545

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 97/229 (42%), Gaps = 18/229 (7%)

Query: 745 LISADYSQIELRILA-HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            +  D + +ELR+LA +I       +V +  +     +AA +            R  AKT
Sbjct: 330 FVGYDGAGLELRMLASYIGDPDYTREVVDGDVHTANQIAAGL----------PTRDDAKT 379

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
             ++ IYG    ++   +   R++ A   +++    P + + IE+ K    + GY+  + 
Sbjct: 380 FIYAFIYGAGDAKIGQIIGGTRADGARLREQFLKANPELAKLIERVKQEA-ERGYLVGLD 438

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GR++      S +  +       A+N  +Q + A + + AM+ + + +    L    +L 
Sbjct: 439 GRKLTMRRSESGEVMVHK-----ALNTLLQAAGAIVMKWAMVILDEKVRRAGLKAWKVLD 493

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           IHDE  +E   E++ T    +   +++A    +    PL  +     +W
Sbjct: 494 IHDEGQWECHPEDLATLRGFMETCVKEAG-EILGCNCPLASDSIAGRSW 541


>gi|229472183|gb|ACQ72606.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472275|gb|ACQ72652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472399|gb|ACQ72714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 32/195 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H +AK       ++    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPGQIMVGADLAGIELRMLSHFLAK-------YDQGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK--- 833
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++        S +A   K   
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKQLSSSAAKKKGKE 108

Query: 834 ---RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y     G+ + ++  K    + G+++ + GR+I    ++SP           A+N 
Sbjct: 109 IRTAYVDAIDGLDKLLDAIKK-ASERGFIKALDGRKI---IVDSPHK---------ALNY 155

Query: 891 PIQGSAADITRRAMI 905
            +QG++A + +R M+
Sbjct: 156 CLQGNSAILAKRWMV 170


>gi|281416299|ref|YP_003347539.1| DNA polymerase [Klebsiella phage KP32]
 gi|262410418|gb|ACY66683.1| DNA polymerase [Klebsiella phage KP32]
          Length = 704

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/309 (19%), Positives = 119/309 (38%), Gaps = 57/309 (18%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISA-------- 748
           ++H   +    +TGR     PNL  +P +++  G+  R AF +      ++         
Sbjct: 415 KIHGSVNPNGAVTGRATHSFPNLGQVPGVRSPYGEPCRAAFGAEHHLDGLTGLPWVQAGI 474

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          ++       ++  +I  VN +      R +AKT  +  
Sbjct: 475 DASGLELRCLAH------FMSKYDGGAYADVILNGDIHTVNQQAAELPTRDNAKTFIYGF 528

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFP-------GIHEYIEKTKNFVR------- 854
           +YG    ++   +   +    +  K++    P       GI + + ++  +V        
Sbjct: 529 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREGIQQTLVESSRWVAGEQKVKW 588

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  ++   + L   
Sbjct: 589 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIVETEELLLKA 636

Query: 915 KLATKM------LLQIHDELVF-----EVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            L          +  +HDE+       E+ ++ I TA Q + +  E         R  L 
Sbjct: 637 GLKHGWDGDFAYMAWVHDEIQVACRTPEIAQQVIDTAQQAMRNVGE-----HFKFRCRLD 691

Query: 964 VNIKVSNNW 972
              K+  NW
Sbjct: 692 TEGKMGPNW 700


>gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916]
 gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916]
          Length = 653

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 35/168 (20%)

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRT--QRVHTFYSL-ASTMTGRLASLEPNLQNIP 724
           +K ILE RQL  +  T        +N R   +RV        +  TGR A     +QN+P
Sbjct: 282 VKKILELRQL--MAKTSIKKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLP 339

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       I   L Q IR AFI     + I AD+S IE R
Sbjct: 340 QNHLPDLEEARNLLRNGDFETIEFLFDSIPDTLSQLIRTAFIPTDGNRFIVADFSAIEAR 399

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAK 802
           ++A++A       VF+   DI+   A+++F V +EK  ++  +R   K
Sbjct: 400 VIAYLANEQWRLDVFKEGGDIYCASASKMFKVPVEKHGINGHLRAKGK 447


>gi|156937484|ref|YP_001435280.1| flap endonuclease-1 [Ignicoccus hospitalis KIN4/I]
 gi|166973698|sp|A8AAC1|FEN_IGNH4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|156566468|gb|ABU81873.1| flap endonuclease 1 [Ignicoccus hospitalis KIN4/I]
          Length = 350

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  VK E+I ++ V+++ GI  E++V +  L G   D  PG+ G+G KTA   ++
Sbjct: 201 PNKNVYVEVKPEEITLKCVLEELGITREQLVAIAVLIG--TDYTPGVKGVGPKTALRYVK 258

Query: 210 EYGNLENIL 218
            YG+LE +L
Sbjct: 259 SYGDLERVL 267


>gi|229472559|gb|ACQ72794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 32/192 (16%)

Query: 745 LISADYSQIELRILAH-IAKIT--PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
           ++ AD + IELR+LAH +A+        V  N  DIH+  A +I G++        RR  
Sbjct: 4   MVGADLAGIELRMLAHYLARYDGGRYGDVLLNG-DIHQENADKI-GIS--------RRLV 53

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIK------RYFHRFPGIHEYIEKTKNFVRQ 855
           KT+ ++ +YG    ++        S+ A   K       Y    PG+ + +   K+   +
Sbjct: 54  KTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVTAVKSKA-E 112

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           +GY++   GRR   D                A+N  +QGSA  + +  M+  H  ++ ++
Sbjct: 113 SGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHNVIKLNQ 160

Query: 916 LATKMLLQIHDE 927
           +    L  IHDE
Sbjct: 161 IKAYQLAFIHDE 172


>gi|262212055|gb|ACY35644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQVMVGADLAGIELRMLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKR-- 834
             ++  +I  VN +K+    R   KT+ ++ +YG    ++     ++  S+AA+   +  
Sbjct: 51  DILLNGDIHQVNADKIGIS-RELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 835 ---YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              +     G+ + +E  K    + G+++ + GR+I  D   SP           A+N  
Sbjct: 110 RQAHIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD---SPHK---------ALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG+ A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNPAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|229472175|gb|ACQ72602.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472207|gb|ACQ72618.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 89/195 (45%), Gaps = 32/195 (16%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLD 776
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H +AK       ++    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPGQIMVGADLAGIELRMLSHFLAK-------YDQGRY 49

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK--- 833
              ++  +I  VN +K+    R+  KT+ ++ +YG    ++        S +A   K   
Sbjct: 50  ADILLNGDIHQVNADKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKQLSSSAAKKKGKE 108

Query: 834 ---RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               Y     G+ + ++  K    + G+++ + GR+I  D   SP           A+N 
Sbjct: 109 IRTAYVDAIDGLDKLLDAIKK-ASERGFIKALDGRKIIVD---SP---------HKALNY 155

Query: 891 PIQGSAADITRRAMI 905
            +QG++A + +R M+
Sbjct: 156 CLQGNSAILAKRWML 170


>gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
 gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
          Length = 650

 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 144/393 (36%), Gaps = 106/393 (26%)

Query: 649 QW--KTTAQDLEQINCGDNP---------IIKNILEWRQ---LSKIKSTYADSLPNHINK 694
           QW  KT   ++E +N    P          +K +LE RQ    + +K   A       + 
Sbjct: 247 QWLLKTDGLEVESLNKESVPELLKQTESSTVKQMLELRQEMAKTSVKKYLAMERAKGKDG 306

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIP----------------------------IK 726
           R + +  FY   +  TGR A     +QN+P                            + 
Sbjct: 307 RVRGLLQFY--GANRTGRWAGRLVQVQNLPRNSIKDLDQARQLLKAGDYEMLELLFESVP 364

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           T L Q IR AF+     + I AD+S IE R++A +A       VF     I+   A+ +F
Sbjct: 365 TVLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRMDVFRTHGKIYEASASAMF 424

Query: 787 GVNIEKVSPQ--MRRHAKTINFSIIY---------------GISPFRLATQLRIPRSEAA 829
            V IE+++    +R+  K    ++ Y               G++   L   +++ R  + 
Sbjct: 425 HVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMGALKEGLTEEELPGLVKLWRQSSP 484

Query: 830 DYIKRYFH-RFPGIHEYIEKTK-------NFVRQNG--YVETIFGRRIHY--------DE 871
           + +K ++      I    EKT        +F+ ++G  ++    GRR+ Y          
Sbjct: 485 NIVKFWYDTEAAAIKAVKEKTTVELHHGIHFIYESGILFIRLPSGRRLAYIKPRIQNNPR 544

Query: 872 INSPKSSIRNINERAA------------INAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ++ P  +     +               +   +Q  A D    A++ +  +        K
Sbjct: 545 LDKPALTYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVA------GYK 598

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
            ++ +HDE V E+P           V S+E AC
Sbjct: 599 TVMHVHDESVMEMPHG---------VGSLEDAC 622


>gi|125999975|ref|YP_001039646.1| DNA polymerase A domain-like protein [Erwinia amylovora phage
           Era103]
 gi|121621831|gb|ABM63405.1| DNA polymerase A domain-like protein [Enterobacteria phage Era103]
          Length = 833

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 21/211 (9%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R  FI+   KK++  D + +ELR+LAH     P Y       DIH          N EK
Sbjct: 550 LRDLFIASKGKKVLGCDGAGLELRVLAHFMN-DPEYSEVVLHGDIHTH--------NQEK 600

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
               +R  AKT  ++ +YG     LA    +   E      R+    P +   +   +  
Sbjct: 601 AGLPLRDMAKTFIYAFLYGSGDDNLAAVCGVSVKEMKAIRARFMAELPQLARLMAAVQAS 660

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
             + GY++   G   H+  I      +    E   +N  +Q + +   + A++     ++
Sbjct: 661 GNEYGYLQAPDG---HWGRIRKKDGKLL---EHTMLNVLLQMTGSLCMKYALVRAVMVMK 714

Query: 913 ------DHKLATKMLLQIHDELVFEVPEEEI 937
                 D       L  IHDE+  EV  +E+
Sbjct: 715 QEGVGLDENGHPAFLANIHDEMQMEVNADEV 745


>gi|32442287|gb|AAP82214.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 17/224 (7%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQL 677
           + FNL S KQ+G+ L     +     T TGQ     + L  I +  +  +I + L    L
Sbjct: 168 QDFNLGSRKQIGEYLID-FGWKPERFTPTGQPIVDEKTLSAITHIHEAKLIADFL----L 222

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRA 736
            + +    DS    + +   RVH F      +TGR+    PN+  +P + +  G++ R  
Sbjct: 223 LQKRIAQVDSWVEGV-QEDGRVHGFVIPNGAITGRMTHRNPNVAQVPAVYSPYGKECRAC 281

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           +       LI  D S +E+R+LAH            +    + ++  +I   N +    +
Sbjct: 282 WTVEEGNVLIGVDASGLEIRMLAH---------YMNDEEYTNEILNGDIHTANQKLAKLE 332

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            R  AKT  ++++YG    +L + +    S+     + +F   P
Sbjct: 333 SRDKAKTFIYALMYGAGDEKLGSVVGGSTSDGKRARQYFFDNKP 376


>gi|148724472|ref|YP_001285438.1| exonuclease [Cyanophage Syn5]
 gi|145588117|gb|ABP87936.1| exonuclease [Synechococcus phage Syn5]
          Length = 245

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 25/159 (15%)

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +E   +   V+F      FR ++ P YK NR K       +L    ++T      ++   
Sbjct: 55  RERFETEDLVLFWTDKKNFRKDVEPTYKGNRTKRKPAGYAKLKKWAMSTWK----SVMKP 110

Query: 114 GFEADD---IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKIDIEHVI 169
           G EADD   I+AT   I+        ++S DKD+ Q+     C LY+  +E     E   
Sbjct: 111 GLEADDALGIVATQGNISN-----FVLVSPDKDMEQI----PCRLYNLKREFTQTPEDA- 160

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
                  E+ + +Q LTGDS D   G PG+G K A L+L
Sbjct: 161 -------ERKLYVQCLTGDSTDGYRGCPGVGPKRADLIL 192


>gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 675

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 34/251 (13%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD---ILFTKLKFPSGA 643
           G  ID +L+K++   I+     L+E   +L+      +    L +    L+T L  P  A
Sbjct: 198 GYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDLLNKYLFLYTGLDLPDMA 257

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           ++ T     +  D+ Q++     I+ N L   Q + +K    ++L   ++   +   T  
Sbjct: 258 ES-TVLTALSQPDIPQLS---KAILNNRLSSSQSAILK---LNTLSGAVSPDNRLRGTLQ 310

Query: 704 SLASTMTGRLASLEPNLQNIPIKT-------------DLGQKI-----------RRAFIS 739
              ++ TGR +      QN+P +T             D G  I           R   I+
Sbjct: 311 FFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVPIKDPLRFASDCVRSCIIA 370

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            P KKLI AD + IE R+LA +A        F N  DI++   ++ F V +  V+   R 
Sbjct: 371 SPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFNVPLSDVTKDQRA 430

Query: 800 HAKTINFSIIY 810
             K +  ++ Y
Sbjct: 431 IGKVMELALGY 441


>gi|282857723|ref|ZP_06266932.1| exonuclease [Pyramidobacter piscolens W5455]
 gi|282584393|gb|EFB89752.1| exonuclease [Pyramidobacter piscolens W5455]
          Length = 252

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 83/205 (40%), Gaps = 36/205 (17%)

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI- 112
           ++ I +  AV    P   FR  I+P+YKANR         + PLV    +A+     E  
Sbjct: 55  RDKITADDAVFALSPKRNFRYRIWPEYKANRKD------KRRPLVLEQLKAWMTEEYETF 108

Query: 113 --QGFEADD---IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----TVKEEKI 163
              G EADD   I+AT  YI E E     I+S DKD   + +    + D       E + 
Sbjct: 109 LRPGLEADDSLGILATSPYIIEGEKI---IVSADKDFKTVPAKFCDIRDWEVRETTEAQA 165

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIG-YKTAALL--LQEYGNLENILIN 220
           D  H+              Q LTGD+ D   G P  G  K   +L  L  Y  +   ++ 
Sbjct: 166 DYNHM-------------FQTLTGDACDGYKGCPDCGPVKARKVLDGLSSYREMWPAVVE 212

Query: 221 ASRIKQKKRRENILEYAETARLSRK 245
           A   K+    E  L  A  AR+ R+
Sbjct: 213 A-YAKKGLGEEYALVMARLARICRR 236


>gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001]
 gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001]
          Length = 1757

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 121/296 (40%), Gaps = 40/296 (13%)

Query: 658  EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            EQ N     +++ IL    L+  +S Y  +L +H      R+H   +     +GR +   
Sbjct: 1442 EQGNQTQTELLETILS---LTGARSVYGTAL-DHCQS-DGRIHPQVAPLQA-SGRFSLTN 1495

Query: 718  PNLQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSL 775
            P +     +   G+   RA   P     +L++AD SQI++R +A  A+     ++F+   
Sbjct: 1496 PGITVFGKRG--GRVTERAIFLPDADDHRLLAADLSQIDMRAMAAHAQDPAYLELFQPGR 1553

Query: 776  DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
            D H  +AA + G++        R  AK I     YG+S      +  I ++ A  + +  
Sbjct: 1554 DAHSEIAAAV-GLS--------RSDAKAIGHGWNYGMS-VNGMVRHGISQALAEQFDQGM 1603

Query: 836  FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI--- 892
               FP +  + ++ +        ++  FGR             +R    RA    P    
Sbjct: 1604 RRSFPQLVAWRDQIRERAASGQLLDNGFGR------------MMRPNPARAHTQGPALMG 1651

Query: 893  QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
            QG+A D+    M+     L    +     L +HDELVF VP   +  A + I+ +M
Sbjct: 1652 QGTARDL----MMLALLRLPLWLVPQLRFL-VHDELVFSVPVARLDEAGEQILQAM 1702


>gi|70606571|ref|YP_255441.1| flap endonuclease-1 [Sulfolobus acidocaldarius DSM 639]
 gi|68567219|gb|AAY80148.1| XPG/RAD25 related endonuclease [Sulfolobus acidocaldarius DSM 639]
          Length = 331

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 12/127 (9%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I++E ++KK GI  E+++ +  L G    N  G+ GIG KTA  +++
Sbjct: 179 PNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTDY-NPDGVKGIGVKTALRIIK 237

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           +Y N+EN  I    I+  K   +I E        RKL +      +  P E L L +CN 
Sbjct: 238 KYNNIEN-AIEKGEIQLSKINFDIREI-------RKLFITPE---VKKPTERLELAECNE 286

Query: 270 PRLISFL 276
             +I  L
Sbjct: 287 REIIELL 293


>gi|317487295|ref|ZP_07946090.1| hypothetical protein HMPREF0179_03453 [Bilophila wadsworthia 3_1_6]
 gi|316921485|gb|EFV42776.1| hypothetical protein HMPREF0179_03453 [Bilophila wadsworthia 3_1_6]
          Length = 271

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 95/238 (39%), Gaps = 46/238 (19%)

Query: 8   FLVDGSSFIYRAFY-ATPLLSRKHDG-LPV----NAIAGFCNMLWKLLQNSRKESIASHF 61
            L+D     YRA   A  ++  + D   P+    +A A F   L+ +L     +   S +
Sbjct: 11  LLIDADVLAYRAAAGAEKVICFEEDSCFPLCSLADAQAAFFGQLYAILD----QLGTSDY 66

Query: 62  AVIF-DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI---QGFEA 117
           A+ F D     FR  ++P YKANR   P  +   L  +R A      P   +    G EA
Sbjct: 67  ALCFSDDHNGGFRRRLFPGYKANRDGKPRPV--ALKFLREALMRDDNPDASVYIKPGLEA 124

Query: 118 DDIIATYTYIAE-KEGFAVTIISTDKDLMQLVSPTTCLYDT---------VKEEKIDIEH 167
           DD +     +     G    I+S DKD+  +       YD          V  E  D+ H
Sbjct: 125 DDCLGILATLPSFMRGRQKVIVSVDKDMKSIPG---FFYDMGKPDLGIQPVSREDADLWH 181

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL----QEYGNLENILINA 221
           +              Q L GD+ D  PG P IG  TA  L     ++YG+L  ++++A
Sbjct: 182 MT-------------QTLIGDAADGYPGCPKIGPMTAKKLFDGIPRDYGHLWPVVVSA 226


>gi|76364187|sp|Q4JAN1|FEN_SULAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 349

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 12/127 (9%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I++E ++KK GI  E+++ +  L G    N  G+ GIG KTA  +++
Sbjct: 197 PNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTDY-NPDGVKGIGVKTALRIIK 255

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           +Y N+EN  I    I+  K   +I E        RKL +      +  P E L L +CN 
Sbjct: 256 KYNNIEN-AIEKGEIQLSKINFDIREI-------RKLFITPE---VKKPTERLELAECNE 304

Query: 270 PRLISFL 276
             +I  L
Sbjct: 305 REIIELL 311


>gi|332983347|ref|YP_004464788.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
 gi|332701025|gb|AEE97966.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
          Length = 657

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           +G   +LE    ++P    L + IR AF+  P  K I AD+S IE R++A +A      +
Sbjct: 361 SGDFDALEILYDSVP--GVLSELIRTAFVPMPGYKFIVADFSAIEARVIAWLAGEQWRNE 418

Query: 770 VFENSLDIHRMVAAEIFGVNIEKV---SPQMRRHAKTINFSIIYGIS 813
           VF +   I+   A+++F V IE++   SP +R+  K    ++ YG S
Sbjct: 419 VFASHGKIYEASASQMFRVPIEEITKGSP-LRQKGKIAELALGYGGS 464


>gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 49/260 (18%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLE--ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           GI+IDQ L+   +A   +N+   +  +   +L+G   N +SP QL D L  +     G K
Sbjct: 204 GIRIDQQLVN--NAIKCQNVFHDQYLQTAKELTGLA-NPNSPLQLKDWLQQQ-----GIK 255

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHT 701
           T +    + AQ L Q   G    +  +L  RQL   S +K   A       + R   +  
Sbjct: 256 TNSLSKASVAQ-LLQTTTG---TVHQVLALRQLLSKSSVKKYQAMQKAMCQDGRVHGLLQ 311

Query: 702 FYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKI 733
           FY   +  TGR A     +QN+P                            +   L Q I
Sbjct: 312 FY--GANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPALAMLYDSVPDVLSQLI 369

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK- 792
           R AFI         AD+S +E R++A ++      + F  + DI+   A+++FGV + K 
Sbjct: 370 RTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIYCASASQMFGVPVVKH 429

Query: 793 -VSPQMRRHAKTINFSIIYG 811
            ++ ++R+  K    ++ YG
Sbjct: 430 GINGELRQKGKIAELALGYG 449


>gi|296226151|ref|XP_002758779.1| PREDICTED: DNA polymerase theta-like [Callithrix jacchus]
          Length = 66

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LQ+HDEL++EV EE++   +QI+ + ME A    + L V LK+ +K+  +W E
Sbjct: 11  ILQLHDELLYEVAEEDVVQVAQIVKNEMESA----VKLSVKLKLKVKIGASWGE 60


>gi|47934750|gb|AAT39813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 14/160 (8%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE I + +G++       FN  S KQ+ + L   L      KT+ G      + L+ I 
Sbjct: 38  VEERISEKTGKRLKDKVTIFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSI- 95

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P  K +  +  L K +    DS    + K   RVH      S +TGR+  L PN+ 
Sbjct: 96  --DLPEAKAVARYMMLQK-RVAQIDSWLKAV-KDDGRVHGRVITNSAVTGRMTHLSPNMA 151

Query: 722 NIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            +P +    G + R  +      +L+  D S +ELR+LAH
Sbjct: 152 QVPAVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAH 191


>gi|47934836|gb|AAT39856.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 219

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           + R+H  Y   +T T R A   PNL  +P      ++ RR F + P +++++AD S IEL
Sbjct: 139 SSRIH-HYCSTNTATFRCAHRTPNLGQVPSD----ERFRRLFTATPGQRMVAADLSGIEL 193

Query: 756 RILAH 760
           R+LAH
Sbjct: 194 RMLAH 198


>gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 653

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q IR AFI     +   AD+S IE R++A +A       VF +  DI+   A+++F V
Sbjct: 372 LSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMDVFADGGDIYCASASKMFHV 431

Query: 789 NIEK--VSPQMRRHAKTINFSIIYG 811
            +EK  V+  +R+  K    ++ YG
Sbjct: 432 PVEKHGVNGHLRQKGKVAELALGYG 456


>gi|323943783|gb|EGB39879.1| DNA polymerase I [Escherichia coli H120]
          Length = 71

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 40  GFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
           G  NML  L+   +     +H AV+FD    TFR+E++  YK++RP +P+ L  Q+  + 
Sbjct: 3   GVLNMLRSLIMQYK----PTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLH 58

Query: 100 LATQAFGIPAIEI 112
              +A G+P + +
Sbjct: 59  AMVKAMGLPLLAV 71


>gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 662

 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 9/123 (7%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q IR  FI  P  + I +D+S IE RI+A +A    +  VF++   I+   A+++F V
Sbjct: 376 LSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVLNVFQDHGKIYEAAASQMFKV 435

Query: 789 NIEKV-----SPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRF 839
            +E +     + ++R   K    +  Y   P  L    A +  IP  E    +KR+    
Sbjct: 436 PMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMGALKSGIPEEELPGIVKRWRKAN 495

Query: 840 PGI 842
           P I
Sbjct: 496 PRI 498


>gi|213420856|ref|ZP_03353922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 72

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C     + V
Sbjct: 1   KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC---TRIDV 56

Query: 961 PLKVNIKVSNNWQE 974
           PL V +    NW +
Sbjct: 57  PLLVEVGSGENWDQ 70


>gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes
           L99]
          Length = 644

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 39/254 (15%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G++ID DL+K   A   +   SL +    L+G + N +S +QL D L   + +P  +  K
Sbjct: 205 GVRIDVDLVKHAIACQERYQASLSKKAKGLTGLE-NPNSVQQLKDWL-ADMGYPVSSLNK 262

Query: 647 TGQWKTTA-QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
               +  A +DL      D  + + +L  +++SK      + +  H      RV      
Sbjct: 263 DSVSELLADEDL------DEDVREMLLLRQEMSKTSIKKYEKM-QHARCHDGRVRGLLQF 315

Query: 706 -ASTMTGRLASLEPNLQNIP---------IKTD-------------------LGQKIRRA 736
             +  TGR A     +QN+P         ++ D                   L Q IR A
Sbjct: 316 NGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTA 375

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI+         D+S IE R++A +A       VF +   I+   A+++F + IE+V   
Sbjct: 376 FIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKN 435

Query: 797 MRRHAKTINFSIIY 810
           +R+  K    ++ Y
Sbjct: 436 LRQKGKVSELALGY 449


>gi|332672359|ref|YP_004421603.1| putative RNaseH [Campylobacter phage NCTC12673]
 gi|327493536|gb|AEA86395.1| putative RNaseH [Campylobacter phage NCTC12673]
          Length = 341

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 24/178 (13%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
            K+ G+ V+ I  +     KL+Q        +   +  +  + ++R   YP+YK NR K+
Sbjct: 31  EKYHGMFVHLIFNYL----KLIQTEYARDYGNEIILALE-GSNSWRKSYYPEYKTNR-KL 84

Query: 88  PEML------LPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            ++        P +  ++ +  ++     + ++G E DDIIA    +A      V ++S 
Sbjct: 85  SDVFDWENEVFPAVNEIIDVIKKSLPYKVLRVKGAEGDDIIAV---LANHTAKPVLVVSE 141

Query: 141 DKDLMQL-VSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
           DKD MQL ++    L+  +K+E   +IE           K + +  L GD  DNIP I
Sbjct: 142 DKDFMQLLINKHITLFKPIKKEFFRNIEES------EITKTLTMHILLGDKADNIPSI 193


>gi|47934646|gb|AAT39761.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 30/166 (18%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAK----TKTGQWKTTAQDL 657
           +EE   D +G++       FN  S +Q+ D L  K     GA     T TG+ K   + L
Sbjct: 38  IEERYSDKTGKRLKDRVTVFNPGSRQQVADRLTAK-----GAVWKDITPTGKPKVDEKSL 92

Query: 658 EQINCGDNPIIKNILEWRQLSK---IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           EQ    + P    +LE+  LSK   +  ++ D++ +       R+H   +    +TGR+ 
Sbjct: 93  EQ--NANIPEAALVLEYLTLSKRIGMVRSWLDAVGD-----DGRIHGRVNTCGAITGRMT 145

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              PN+  IP ++      R  F      KL+  D S +ELR+LAH
Sbjct: 146 HSSPNMAQIPSES----LYRSCFTVADGNKLVGIDASGLELRMLAH 187


>gi|213584655|ref|ZP_03366481.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 122

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 56  SIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      
Sbjct: 40  SQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASD 99

Query: 114 GFEADDIIATYTYIAEKEGFAVT 136
           G EADD+ AT      + G   T
Sbjct: 100 GNEADDLAATLALKVTEAGHQAT 122


>gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3]
 gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3]
          Length = 656

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 724 PIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           PI   L    R+ F  + P   L+ AD S IE R    IA    L + FE  +D +++ A
Sbjct: 365 PILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLELLEAFEKGVDPYKLAA 424

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           A IF V  E V+   R+  K    ++ YG
Sbjct: 425 AAIFQVTYEAVTKDQRQIGKVAMLALTYG 453


>gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 644

 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 123/299 (41%), Gaps = 55/299 (18%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLE--ENIYDLSGEKFNLSSPKQLGDILFTK-LKFPSGA 643
           GI+IDQ L+   +A   +N+   +  +   +L+G   N +SP QL D L  + +K  S +
Sbjct: 204 GIRIDQQLVN--NAIKCQNVFHDQYLQTAKELTGLA-NPNSPLQLKDWLQQQDIKTNSLS 260

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVH 700
           K    Q       L Q   G    +  +L  RQL   S IK   A       + R   + 
Sbjct: 261 KASVAQ-------LLQTTTG---TVHQVLALRQLLSKSSIKKYQAMQKAMCQDGRVHGLL 310

Query: 701 TFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQK 732
            FY   +  TGR A     +QN+P                            +   L Q 
Sbjct: 311 QFY--GANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPALAMLYDSVPDVLSQL 368

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AFI         AD+S +E R++A ++      + F  + DI+   A+++FGV + K
Sbjct: 369 IRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIYCASASQMFGVPVVK 428

Query: 793 --VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
             ++ ++R+  K    ++ YG S   L    AT L +   E    ++ + +  P I ++
Sbjct: 429 HGINGELRQKGKIAELALGYGGSIGALKAMGATNLGLTDDELPPLVQMWRNASPHIVQF 487


>gi|47934670|gb|AAT39773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 30/166 (18%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAK----TKTGQWKTTAQDL 657
           +EE   D +G++       FN  S +Q+ D L  K     GA     T TG+ K   + L
Sbjct: 38  IEERYSDKTGKRLKDRVTVFNPGSRQQVADRLTAK-----GAVWKDITPTGKPKVDEKSL 92

Query: 658 EQINCGDNPIIKNILEWRQLSK---IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           EQ    + P    +LE+  LSK   +  ++ D++ +       R+H   +    +TGR+ 
Sbjct: 93  EQ--NANIPEAALVLEYLTLSKRIGMVRSWLDAVGD-----DGRIHGRVNTCGAITGRMT 145

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              PN+  IP ++      R  F      KL+  D S +ELR+LAH
Sbjct: 146 HSSPNMAQIPSES----LYRSCFTVADGNKLVGIDASGLELRMLAH 187


>gi|47934654|gb|AAT39765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 30/166 (18%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAK----TKTGQWKTTAQDL 657
           +EE   D +G++       FN  S +Q+ D L  K     GA     T TG+ K   + L
Sbjct: 38  IEERYSDKTGKRLKDRVTVFNPGSRQQVADRLTAK-----GAVWKDITPTGKPKVDEKSL 92

Query: 658 EQINCGDNPIIKNILEWRQLSK---IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           EQ    + P    +LE+  LSK   +  ++ D++ +       R+H   +    +TGR+ 
Sbjct: 93  EQ--NANIPEAALVLEYLTLSKRIGMVRSWLDAVGD-----DGRIHGRVNTCGAITGRMT 145

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              PN+  IP ++      R  F      KL+  D S +ELR+LAH
Sbjct: 146 HSSPNMAQIPSES----LYRSCFTVADGNKLVGIDASGLELRMLAH 187


>gi|47934648|gb|AAT39762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934652|gb|AAT39764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934664|gb|AAT39770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 30/166 (18%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAK----TKTGQWKTTAQDL 657
           +EE   D +G++       FN  S +Q+ D L  K     GA     T TG+ K   + L
Sbjct: 38  IEERYSDKTGKRLKDRVTVFNPGSRQQVADRLTAK-----GAVWKDITPTGKPKVDEKSL 92

Query: 658 EQINCGDNPIIKNILEWRQLSK---IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           EQ    + P    +LE+  LSK   +  ++ D++ +       R+H   +    +TGR+ 
Sbjct: 93  EQ--NANIPEAALVLEYLTLSKRIGMVRSWLDAVGD-----DGRIHGRVNTCGAITGRMT 145

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              PN+  IP ++      R  F      KL+  D S +ELR+LAH
Sbjct: 146 HSSPNMAQIPSES----LYRSCFTVADGNKLVGIDASGLELRMLAH 187


>gi|159038749|ref|YP_001538002.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
 gi|157917584|gb|ABV99011.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
          Length = 566

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 27/202 (13%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P +  +LE+++L +I + +  +       R  R    Y     ++GR A+       I
Sbjct: 270 DHPAVPLVLEYKELYRIWTAHGWAW-RDAWVRDGRFRPEYVPGGVVSGRWATRGGGALQI 328

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      + IRRA ++ P   L+ AD  Q+E R+LA ++  T        + D++  +A 
Sbjct: 329 P------KVIRRAVVADPGWTLVVADAGQLEPRVLAAVSGDT-RLAAAAGAGDLYAALAR 381

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           + FG +        R  AK      +YG +    A  L + R             +P   
Sbjct: 382 DAFGGD--------RARAKVALLGAMYGQTGGSAAPALEVLR-----------RNYPAAF 422

Query: 844 EYIEKTKNFVRQNGYVETIFGR 865
            Y+E         G V +  GR
Sbjct: 423 AYVESAARSGESGGLVRSWLGR 444


>gi|47934656|gb|AAT39766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 30/166 (18%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAK----TKTGQWKTTAQDL 657
           +EE   D +G++       FN  S +Q+ D L  K     GA     T TG+ K   + L
Sbjct: 38  IEERYSDKTGKRLKDRVTVFNPGSRQQVADRLTAK-----GAVWKDITPTGKPKVDEKSL 92

Query: 658 EQINCGDNPIIKNILEWRQLSK---IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           EQ    + P    +LE+  LSK   +  ++ D++ +       R+H   +    +TGR+ 
Sbjct: 93  EQ--NANIPEAALVLEYLTLSKRIGMVRSWLDAVGD-----DGRIHGRVNTCGAITGRMT 145

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              PN+  IP ++      R  F      KL+  D S +ELR+LAH
Sbjct: 146 HSSPNMAQIPSES----LYRSCFTVADGNKLVGIDASGLELRMLAH 187


>gi|315518941|dbj|BAJ51818.1| DNA polymerase-like protein [Ralstonia phage RSB2]
          Length = 701

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 122/330 (36%), Gaps = 77/330 (23%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLG----------QKIRRAFISPPTKKLISA 748
           +H   +    +TGR     PNL  +P  T L           + IR+  +       +  
Sbjct: 393 IHGSVNPNGAVTGRATHAFPNLAQVPSGTALYGPQCRALFGVEHIRKTVVGWAAAVQVGT 452

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE------------KVSP- 795
           D S +ELR L H          F++   I  ++  +I  VN+E            K  P 
Sbjct: 453 DASGLELRCLGH------FMARFDDGQYIRDILEGDIHWVNVEALGLVPKGTKRIKEGPG 506

Query: 796 -----QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA---DYIKRYFHRFPGI----- 842
                + R +AKT  ++ +YG    ++ +   IP    A   D  K++    P I     
Sbjct: 507 HEEHDKFRGYAKTFIYAFLYGAGDEKIGSI--IPGGNKAVGKDLKKKFMEGTPAIASLRA 564

Query: 843 ---------HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
                     ++++       +  +++ + GR+I   ++ SP          AA+N+ +Q
Sbjct: 565 TLEELLVESQKWVDGVAQVKWKRRWIKGLDGRKI---KVRSP---------HAALNSLLQ 612

Query: 894 GSAADITRRAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHS 947
            + A + +  ++   + L +  L          L  +HDE+       EI   + II   
Sbjct: 613 SAGALLCKYWVVRTEQLLLERGLVHGWHGDFAYLAWVHDEMQIAARTPEI---AAIIAEC 669

Query: 948 MEKACLPK---INLRVPLKVNIKVSNNWQE 974
            ++A          R  L    KV +NW++
Sbjct: 670 SQQAMREAGDFFAFRCILDTESKVGDNWKD 699


>gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23]
 gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23]
          Length = 545

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 39/254 (15%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G++ID DL+K   A   +   SL +    L+G + N +S +QL D L   + +P  +  K
Sbjct: 106 GVRIDVDLVKHAIACQERYQASLSKKAKGLTGLE-NPNSVQQLKDWL-ADMGYPVSSLNK 163

Query: 647 TGQWKTTA-QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
               +  A +DL      D  + + +L  +++SK      + +  H      RV      
Sbjct: 164 DSVSELLADEDL------DEDVREMLLLRQEMSKTSIKKYEKM-QHARCHDGRVRGLLQF 216

Query: 706 -ASTMTGRLASLEPNLQNIP---------IKTD-------------------LGQKIRRA 736
             +  TGR A     +QN+P         ++ D                   L Q IR A
Sbjct: 217 NGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTA 276

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI+         D+S IE R++A +A       VF +   I+   A+++F + IE+V   
Sbjct: 277 FIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKN 336

Query: 797 MRRHAKTINFSIIY 810
           +R+  K    ++ Y
Sbjct: 337 LRQKGKVSELALGY 350


>gi|239980380|ref|ZP_04702904.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291452241|ref|ZP_06591631.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291355190|gb|EFE82092.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 562

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 130/355 (36%), Gaps = 77/355 (21%)

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA-DSLPNHINKRTQRVHTFY 703
           T T +W     +LE+I   D+P +  +L  ++L +I   +    L + +  R  R    Y
Sbjct: 243 TSTRRW-----ELEKI---DHPAVAPLLAHKKLYRIWVAHGWQWLADWV--RDGRFRPSY 292

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
               T++GR A+       IP      + IRRA ++ P  +L+ AD  Q+E RILA ++ 
Sbjct: 293 LPGGTVSGRWATNGGGALQIP------KVIRRAVVADPGWRLVVADADQLEPRILAAVSG 346

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L +V     D+++ V+   F  +        R  AK      +YG +          
Sbjct: 347 DRALMEVASRPDDLYQAVSDRAFQGD--------RDLAKLAVLGAVYGQT---------- 388

Query: 824 PRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
               + D +K       RFP   +++++      +   V T  GR         P ++  
Sbjct: 389 ----SGDGLKNLAALRRRFPAAVDHVDEAARAGEEGRLVRTWLGR------TCPPATAPG 438

Query: 881 NINERAAIN-----------APIQGSAADITRR---------------AMISVHKSLEDH 914
              E A I            AP   S A    R                ++         
Sbjct: 439 GPAEEAGIPDALPEGDTGGYAPGASSGARARGRFTRNFVVQGSAADWALLLLAALRSSLA 498

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVNI 966
            L  +++   HDE++   P+EE       I  + ++A   C   + +R P    +
Sbjct: 499 PLRAELVFFQHDEVIVHCPDEEAPAVVAAIAAASDRATAICFGDVPVRFPFTTAV 553


>gi|328553017|gb|AEB23509.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
          Length = 763

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 32/181 (17%)

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R   K  NF   YG    + +  L +    A   +  + + FP +  Y ++    V++N 
Sbjct: 591 RYIGKMFNFMRNYGGGAKKASEALEVSMEIANALVSGWSNTFPEVSYYQKQVAAKVQKNS 650

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAI-NAPIQGSAADITRRAMISVHKSLEDHKL 916
           Y   ++GR +++         + N ++   + N  +QGS AD+ +  +I + + L ++  
Sbjct: 651 YATNMYGR-VYF---------LSNTDKAYKVGNYLVQGSCADMLKGYVIRIGEFLRENNC 700

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN--------LRVPLKVNIKV 968
            T  L  IHDEL             Q +VH  E+   P I         ++VP+ V++++
Sbjct: 701 KTLPLANIHDEL-------------QFLVHKGEEWIFPHIKRIMEDVEWMQVPVVVDLEI 747

Query: 969 S 969
           +
Sbjct: 748 T 748


>gi|47934644|gb|AAT39760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 30/166 (18%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAK----TKTGQWKTTAQDL 657
           +EE   D +G++       FN  S +Q+ D L  K     GA     T TG+ K   + L
Sbjct: 38  IEERYSDKTGKRLKDRVTVFNPGSRQQVADRLTAK-----GAVWKDITPTGKPKVDEKSL 92

Query: 658 EQINCGDNPIIKNILEWRQLSK---IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           EQ    + P    +LE+  LSK   +  ++ D++ +       R+H   +    +TGR+ 
Sbjct: 93  EQ--NANIPEAALVLEYLTLSKRIGMVRSWLDAVGD-----DGRIHGRVNTCGAITGRMT 145

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              PN+  IP ++      R  F      KL+  D S +ELR+LAH
Sbjct: 146 HSSPNMAQIPSES----LYRSCFTVDEGNKLVGIDASGLELRMLAH 187


>gi|47934708|gb|AAT39792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 16/161 (9%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +EE I + +G++       FN  S KQ+ + L    +KF    KT+ G       D + +
Sbjct: 38  VEERISEKTGKRLKDKVTIFNPGSRKQIAERLQGLGVKFKK--KTEKG---NVIVDEKVL 92

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
           N  D P  K +  +  L K +    DS    + K   RVH        +TGR+  L PN+
Sbjct: 93  NSIDLPEAKAVARYMMLQK-RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNM 150

Query: 721 QNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
             +P +    G + R  +      +L+  D S +ELR+LAH
Sbjct: 151 AQVPAVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAH 191


>gi|47934752|gb|AAT39814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 9/142 (6%)

Query: 621 FNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           FN  S KQ+ + L    +KF +  KT+ G       D + +N  D P  K +  +  L K
Sbjct: 57  FNPGSRKQIAERLQGLGVKFTN--KTEKGN---IIVDEKALNSIDLPEAKAVARYMMLQK 111

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFI 738
            +    DS    + K   RVH        +TGR+  L PN+  +P +    G + R  + 
Sbjct: 112 -RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWT 169

Query: 739 SPPTKKLISADYSQIELRILAH 760
                KL+  D S +ELR+LAH
Sbjct: 170 VDEGNKLVGIDASGLELRMLAH 191


>gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 651

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 120/346 (34%), Gaps = 77/346 (22%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL-ASTMTGRLASLEPNLQNI 723
           +P  + +L+ RQ S   S    +         QR+H F     +  TGR A      QN+
Sbjct: 270 SPETRRVLQIRQESGKTSITKYAAIQRSVCNDQRLHGFLQFYGANRTGRWAGRIFQPQNL 329

Query: 724 PIKT----DLGQK------------------------IRRAFISPPTKKLISADYSQIEL 755
           P       +L +K                        IR A I P       ADYS IE 
Sbjct: 330 PRNAFNDIELARKLVKEKDFESLDMLYGSYNQVFSTLIRTAVIPPNGHMFAIADYSAIEA 389

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--PQMRRHAKTINFSIIYGIS 813
           R+ A         +VF  +  I+   AA++F V IE V+    +R+  K    ++ YG  
Sbjct: 390 RLTAWFCNEEWRQEVFATTGKIYEASAAQMFHVPIESVTKGSDLRKKGKVAELALGYGGG 449

Query: 814 PFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN----FVRQNGYVETIFGR 865
              L       + +   E  D + ++    P I +   + ++     VR+   V  + G 
Sbjct: 450 VSALERMGGADMGLSEDEMQDIVNKWRLASPNIKKMWYRVQDAAYTAVRERKRVSVVHGV 509

Query: 866 RIHYDE--INSPKSSIRNI--------NERAAINAPIQGSAAD----------------- 898
           R  Y    + +   S R +          R       +G  +D                 
Sbjct: 510 RYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGSDQDGKQTKKWCRQKTWGG 569

Query: 899 ---------ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
                    I R  +      L+D  +  K+++ IHDE+V EVP E
Sbjct: 570 KLFENLIQAIARDCLAKAMLKLDD--VGYKIIMHIHDEVVVEVPSE 613


>gi|262212209|gb|ACY35721.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 173

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 28/194 (14%)

Query: 741 PTKKLISADYSQIELRILAHI-AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           P + +++AD S IELR+L+H  AK       +++      ++  +I  VN +K+    R+
Sbjct: 1   PGQVMVAADSSGIELRMLSHFPAK-------YDDGRYADILLNGDIHQVNADKIGIS-RK 52

Query: 800 HAKTINFSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
             KT+ ++ +YG    ++             + +  +  + Y     G+ + +   K   
Sbjct: 53  LVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGLDKLLAAIKT-A 111

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
              G+++ I GR+I  D   SP           A+N  +QG++A + +R M+   ++++D
Sbjct: 112 SGRGFIKAIDGRKIMVD---SPHK---------ALNYCLQGNSAILAKRWMVINQQNIKD 159

Query: 914 HKLATKMLLQIHDE 927
             L    L  IHDE
Sbjct: 160 LNLCCPQLAFIHDE 173


>gi|47934710|gb|AAT39793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE I + +G++       FN  S KQ+ + L   L      KT+ G      + L+ I 
Sbjct: 38  VEERISEKTGKRLKDKVTIFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSI- 95

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P  K +  +  L K +    DS    + K   RVH        +TGR+  L PN+ 
Sbjct: 96  --DLPEAKAVARYMMLQK-RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMA 151

Query: 722 NIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            +P +    G + R  +      +L+  D S +ELR+LAH
Sbjct: 152 QVPAVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAH 191


>gi|194100439|ref|YP_002003812.1| gp5 [Klebsiella phage K11]
 gi|193201378|gb|ACF15856.1| gp5 [Klebsiella phage K11]
          Length = 709

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/304 (19%), Positives = 112/304 (36%), Gaps = 47/304 (15%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISA-------- 748
           ++H   +    +TGR     PNL  +P +++  G+  R AF +      ++         
Sbjct: 420 KIHGSVNPNGAVTGRATHSFPNLGQVPGVRSPYGEPCRAAFGAEHHLDGLTGQPWVQAGI 479

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           D S +ELR LAH          +++      ++  +I  VN        R +AKT  +  
Sbjct: 480 DASGLELRCLAH------FMSKYDDGAYADVILNGDIHTVNQTAAELPTRDNAKTFIYGF 533

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFP-------GIHEYIEKTKNFVR------- 854
           +YG    ++   +   +    +  K++    P       GI + + ++  +V        
Sbjct: 534 LYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALREGIQQTLVESSRWVAGEQKVKW 593

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  +++ + GR++H   + SP          AA+N  +Q + A I +  ++   + L   
Sbjct: 594 KRRWIKGLDGRKVH---VRSP---------HAALNTLLQSAGALICKLWIVETEELLLKA 641

Query: 915 KLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L          +  +HDE+       EI      I     +        R  L    K+
Sbjct: 642 GLKHGWDGDFAYMAWVHDEIQVACRTSEIAQQVIDIAQQAMRNVGDHFKFRCRLDTEGKM 701

Query: 969 SNNW 972
             NW
Sbjct: 702 GPNW 705


>gi|77918409|ref|YP_356224.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544492|gb|ABA88054.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelobacter carbinolicus DSM 2380]
          Length = 593

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 25/234 (10%)

Query: 735 RAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF---ENSLDIHRMVAAEIFGVNI 790
           R  + P P   L   DY Q E  I   ++    + Q +   +  L       A   G   
Sbjct: 327 RKLVRPGPGNGLAYLDYEQQEFGIAGALSGDEAMRQAYISGDPYLAFAIQAGAAPRGATK 386

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           E     +R   K     + YG+   RLA  L I + EA   +  +   +    ++ +  +
Sbjct: 387 ESHG-DIRSRFKATALGVQYGMGQDRLAMNLNISKGEAKALLDLHRKTYARFWQWQQDIE 445

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM-ISVHK 909
           N     G +  + G ++    I S         +R   N P+Q + A++ R A+ +   +
Sbjct: 446 NKALIEGSIGGVLGWKMR---ITS------KTKDRTLANFPMQANGAEMLRLAVCLCAER 496

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRV 960
           ++       K++  +HD LV E P   +  A  I + +M++A    L   +LR+
Sbjct: 497 NI-------KIVAMVHDALVIEAPIAGLEAAKSIAIQAMKEASEIILAGFSLRI 543


>gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
 gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
          Length = 559

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 46/320 (14%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D+P I  +LE+++L+++ S +  +  +    R  R    Y +   ++GR AS       I
Sbjct: 259 DHPAIAPLLEYKELARLHSAHGWAWLDQW-VRDGRFRPVYVVGGVVSGRWASRGGAALQI 317

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P      + +R    + P   L+ AD +Q+E R+LA ++    L +V  ++ D++  +  
Sbjct: 318 P------KLLRGCVRADPGWTLVVADAAQLEPRVLAALSGDRRLAEVSADA-DLYTSLTH 370

Query: 784 EIFG-VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +FG   IE      R  AK    S +YG +             EAA  +     RFP  
Sbjct: 371 TLFGRTPIE----DDRARAKIAMLSAMYGGT-----------SGEAAPLLSLLRRRFPHA 415

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRI-------------HYDEINSPKSSIRNINERAAIN 889
             ++E       + G V +  GR                 DE NS + + R+   R   N
Sbjct: 416 VSFVEHAAREGERGGLVRSRLGRTSLPPPEAWRTLTGGSGDE-NSARRAARDWG-RFTRN 473

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
             +Q SAAD T   + ++ + L        ++   HDE++   P E        +  S  
Sbjct: 474 FVVQASAADWTAVLLATLRRRL---PAPAHLVFFQHDEVLVHCPTELAGQVQGCLADSAT 530

Query: 950 KACL----PKINLRVPLKVN 965
           +A      P   +R P+   
Sbjct: 531 EATTLVFGPSCPVRFPMPAK 550


>gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31]
 gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31]
          Length = 656

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 117/296 (39%), Gaps = 57/296 (19%)

Query: 583 MEITGIQIDQDLLKQ---VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           M   G+++D +L+     + A    NLL    +I  L     N +S  QL + L      
Sbjct: 201 MNAYGVRVDSELVNGALYIDALSRANLLEEARDITKLD----NPNSTSQLLNWLE----- 251

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINK--RT 696
            +G + +  Q  T  + ++ +   D+   K +LE RQ LSK       ++   + K  R 
Sbjct: 252 EAGEEVENLQKATVGKMIDTL---DDGKAKRVLEIRQELSKTSVKKYKAMDEAMCKDERV 308

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIP----------------------------IKTD 728
           + +  FY   +  TGR A     +QN+P                            I   
Sbjct: 309 RGLLQFY--GANRTGRYAGRLVQVQNLPRNYIETLDVARDVIKKGDGELLEMLYGNIPDT 366

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q IR AFI       + +D+S IE R++A +A      +VF+    I+   A+++FGV
Sbjct: 367 LSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVFKTHGKIYEASASQMFGV 426

Query: 789 NIEKVSP-----QMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRY 835
            I  ++       +R   K    ++ Y  S   L    A  + +   E  D + R+
Sbjct: 427 PINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAADMGLTDEEMKDIVDRW 482


>gi|47934704|gb|AAT39790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934706|gb|AAT39791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934746|gb|AAT39811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE I + +G++       FN  S KQ+ + L   L      KT+ G      + L+ I 
Sbjct: 38  VEERISEKTGKRLKDKVTIFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSI- 95

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P  K +  +  L K +    DS    + K   RVH        +TGR+  L PN+ 
Sbjct: 96  --DLPEAKAVARYMMLQK-RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMA 151

Query: 722 NIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            +P +    G + R  +      +L+  D S +ELR+LAH
Sbjct: 152 QVPAVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAH 191


>gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
 gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
          Length = 649

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR   LE   +++PI   L + IR   I     + I AD+S IE R+LA +A    +   
Sbjct: 349 GRFKELELLYESVPIV--LSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDT 406

Query: 771 FENSLDIHRMVAAEIFGVNIEKVS 794
           F+    I+   A+ +FGV +EK++
Sbjct: 407 FKGHGKIYEQTASRMFGVPVEKIA 430


>gi|269794009|ref|YP_003313464.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
 gi|269096194|gb|ACZ20630.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
          Length = 568

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 106/273 (38%), Gaps = 52/273 (19%)

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL+  +A++S  L           G + NL SP +L       ++      T T  W   
Sbjct: 213 LLEAKAAQVSAAL-----------GVEVNLDSPVEL----LRSMRSAGLPATSTRSW--- 254

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYA-DSLPNHINKRTQRVHTFYSLASTMTGR 712
             +L+QI   D+P I  +LE++++S++ +      L   +     R    Y     +TGR
Sbjct: 255 --ELQQI---DHPAIAPLLEYKKMSRLMTANGWHWLDTWVAD--GRFRPVYVPGGVVTGR 307

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
            AS       +P       +IR A  S P   L+ AD +Q+E RILA ++          
Sbjct: 308 WASDGGGALQLP------HQIRSAVRSDPGWSLVVADAAQLEPRILAAMSG--------- 352

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++       AA+++   +   + + R+ AK      +YG       TQ      E+   +
Sbjct: 353 DAAMAEAGRAADMYEGMVATGAVETRQQAKFGMLGAMYG------GTQ-----GESGRML 401

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
            R    FP     +E       Q   V T  GR
Sbjct: 402 PRITRAFPQALALVEAAARAGEQGEVVSTWLGR 434


>gi|255595591|ref|XP_002536350.1| DNA polymerase I, putative [Ricinus communis]
 gi|223520014|gb|EEF26033.1| DNA polymerase I, putative [Ricinus communis]
          Length = 547

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 102/234 (43%), Gaps = 33/234 (14%)

Query: 574 KPMIDVVSQMEITGIQIDQD-----LLKQVS--AEISKNLLSLEENIYDLSGEKFNLSSP 626
           +P +  + QM  TG+   Q+     +L Q +  AE +  L+ +E ++   S     LS+P
Sbjct: 3   EPQVWDIVQMRETGMPWSQEEAENYVLAQWAKVAEHAAKLIEMEPSLAPFSAA---LSNP 59

Query: 627 KQ---------LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE-WRQ 676
           +          +G   F+          K+G +K   +DL ++        K   E W  
Sbjct: 60  EAGIKADLKAAIGQA-FSNRGIELQMTEKSGAFKIGEKDLRRVKAAVVEDAKPFFEEWVA 118

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLAST----MTGRLASLEPNLQNIPIKTDLGQK 732
           L++ K   A  +   ++K   R +      +T    +TGRL+S EPN Q  P        
Sbjct: 119 LNRAKK--AGGMAREVSKYASRSYDGRLHPNTGHGPVTGRLSSSEPNCQQFPRDPGFRAI 176

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           +R    S P  K++SADYS +++R+ A  A I    Q+ +  +D  R V  +++
Sbjct: 177 VR----SRPGFKIVSADYSALDMRVGAACA-IRAQRQILDAYMD-ERAVPHDVY 224



 Score = 38.9 bits (89), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 36/226 (15%)

Query: 759 AHIAKITPLYQVFE-NSLDIHRMVAAEIFGVN---------IEKVSPQM----------R 798
           A  A+   L   F  + +DIH   A ++FG N          E+V+  +          R
Sbjct: 302 AGTAEWGSLRDAFSIDGMDIHTWTALDMFGHNPGTLFAGLQGEEVAAALKKWKKELGGDR 361

Query: 799 RHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           +  K  N S++Y +  F L         +     EA+D   ++   +  +  + + T+  
Sbjct: 362 QTGKVGNLSLLYAMQAFGLQEAAAKNYNIHWTLEEASDVRSKWLAAYVEVDLWHKWTELN 421

Query: 853 VRQNGYV-----ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
            ++  Y+        FG++  Y      +  I      AA++   Q + ADI    +  V
Sbjct: 422 PKEEVYIPDPDRGGKFGKKQVYAAYTLGERLIYAFGLNAALSYEDQSTGADI----LGLV 477

Query: 908 HKSLEDHKLATKMLL-QIHDELVFEVPEEEITTASQIIVHSMEKAC 952
            +    H    K ++ Q+HDE++FE+P++++   + +I   M  A 
Sbjct: 478 MQEFRQHPGVFKCIVNQVHDEVLFEIPDDKVDEYNAVISRVMTDAA 523


>gi|326912829|ref|XP_003202748.1| PREDICTED: DNA polymerase theta-like [Meleagris gallopavo]
          Length = 2152

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 920  MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +LQ+HDEL++EV E+++   +QI+ H ME A    + L V L V +K+  +W
Sbjct: 2096 FILQLHDELLYEVAEDDVIQVAQIVKHEMENA----VKLSVKLNVKVKIGPSW 2144


>gi|47934744|gb|AAT39810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 16/161 (9%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +EE I + +G++       FN  S KQ+ + L    +KF    KT+ G       D + +
Sbjct: 38  VEERISEKTGKRLKDKVTIFNPGSRKQIAERLQGLGVKFKK--KTEKG---NIIVDEKVL 92

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
           N  D P  K +  +  L K +    DS    + K   RVH        +TGR+  L PN+
Sbjct: 93  NSIDLPEAKAVARYMMLQK-RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNM 150

Query: 721 QNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
             +P +    G + R  +      +L+  D S +ELR+LAH
Sbjct: 151 AQVPAVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAH 191


>gi|47934802|gb|AAT39839.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 228

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 14/145 (9%)

Query: 620 KFNLSSPKQLGDIL----FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           +FNL S +Q+G  L    +   KF     T+TGQ     + LE +   D P  + I E+ 
Sbjct: 83  EFNLGSRQQIGRYLRLFGWKPEKF-----TETGQAVVDEKTLETVT--DIPEAQLIAEYL 135

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIR 734
            + K  +    SL     +   RVH   +    +TGR+    PN+   P +    G + R
Sbjct: 136 MVGKRIAQVQSSL--DAVEDDGRVHGQVNAIGAVTGRMTHSSPNMAQTPAVGVPYGYECR 193

Query: 735 RAFISPPTKKLISADYSQIELRILA 759
             +I P   KL+  D S +ELR+LA
Sbjct: 194 ACWIVPDGHKLVGVDASGLELRMLA 218


>gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R   I+   KKL+ AD + IE R+LA IA      + F N  DI+    A+ F   I+K
Sbjct: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423

Query: 793 VSPQMRRHAKTINFSIIY 810
           VS + R   K +  ++ Y
Sbjct: 424 VSKEQRAIGKVMELALGY 441


>gi|47934650|gb|AAT39763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 22/162 (13%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE   D +G++       FN  S +Q+ D L  K        T TG+ K   + LEQ  
Sbjct: 38  IEERYSDKTGKRLKDRVTVFNPGSRQQVADRLTAKDAVWKDI-TPTGKPKVDEKSLEQ-- 94

Query: 662 CGDNPIIKNILEWRQLSK---IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
             + P    +LE+  LSK   +  ++ D++ +       R+H   +    +TGR+    P
Sbjct: 95  NANIPEAALVLEYLTLSKRIGMVRSWLDAVGD-----DGRIHGRVNTCGAITGRMTHSSP 149

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           N+  IP ++      R  F      KL+  D S +ELR+LAH
Sbjct: 150 NMAQIPSES----LYRSCFTVADGNKLVGIDASGLELRMLAH 187


>gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R   I+   KKL+ AD + IE R+LA IA      + F N  DI+    A+ F   I+K
Sbjct: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423

Query: 793 VSPQMRRHAKTINFSIIY 810
           VS + R   K +  ++ Y
Sbjct: 424 VSKEQRAIGKVMELALGY 441


>gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 652

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 114/276 (41%), Gaps = 46/276 (16%)

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           +G+  ++E    + P    L Q IR AFI     + I +D+S IE R++A +A  +   +
Sbjct: 352 SGKFEAIELLFNSPPFV--LSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMK 409

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQ--MRRHAKTINFSIIYGISPFRL----ATQLRI 823
           VF++   I+   A+ +F V IE+++    +R+  K    ++ YG S   L    A ++ +
Sbjct: 410 VFKSHGKIYEASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGL 469

Query: 824 PRSEAADYIKRYFHRFP---------------GIHEY----IEKTKNFVRQNG--YVETI 862
              E  D +  + +  P                + E+    I+    F  ++G  +++  
Sbjct: 470 DADELPDLVTAWRNSNPKIVKLWWDVDKAAMTAVREHMPVRIQYGITFSYKDGFLFIKLP 529

Query: 863 FGRRIHY-------DEINSPK------SSIRNINERAAINAP--IQGSAADITRRAMISV 907
            GR++ Y        +   P         I+   ER     P  ++     + R  +   
Sbjct: 530 SGRKLAYVKPKIKDGKFGRPALTYEGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVN 589

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
              L+D     +M   +HDE++ +VP  +    +Q+
Sbjct: 590 MLRLDDAGYDIRM--HVHDEVILDVPNTDTDALAQV 623


>gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R   I+   KKL+ AD + IE R+LA IA      + F N  DI+    A+ F   I+K
Sbjct: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423

Query: 793 VSPQMRRHAKTINFSIIY 810
           VS + R   K +  ++ Y
Sbjct: 424 VSKEQRAIGKVMELALGY 441


>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1]
 gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1]
          Length = 675

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R   I+   KKL+ AD + IE R+LA IA      + F N  DI+    A+ F   I+K
Sbjct: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423

Query: 793 VSPQMRRHAKTINFSIIY 810
           VS + R   K +  ++ Y
Sbjct: 424 VSKEQRAIGKVMELALGY 441


>gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 119/299 (39%), Gaps = 55/299 (18%)

Query: 587 GIQIDQDLLK---QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           GI+IDQ L+    +   E     L   + +  L+    N +SP QL + L  +     G 
Sbjct: 204 GIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTGLA----NPNSPLQLKNWLHQQ-----GV 254

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVH 700
           +T +    + AQ L Q   G    +  +L  RQL   S +K   A       +     + 
Sbjct: 255 ETDSLAKASVAQ-LLQTTTG---TVHQVLALRQLLSKSSVKKYQAMQKAMCKDGCVHGLL 310

Query: 701 TFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQK 732
            FY   +  TGR A     +QN+P                            +   L Q 
Sbjct: 311 QFY--GANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTALAMLYESVPDVLSQL 368

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AFI         AD+S +E R++A ++        F  + DI+   A+++FGV + K
Sbjct: 369 IRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDIYCASASQMFGVPVVK 428

Query: 793 --VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
             ++ ++R+  K    ++ YG S   L    AT+L +   E    ++ + +  P I ++
Sbjct: 429 HGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDELPPLVQMWRNASPHIVQF 487


>gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R   I+   KKL+ AD + IE R+LA IA      + F N  DI+    A+ F   I+K
Sbjct: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423

Query: 793 VSPQMRRHAKTINFSIIY 810
           VS + R   K +  ++ Y
Sbjct: 424 VSKEQRAIGKVMELALGY 441


>gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R   I+   KKL+ AD + IE R+LA IA      + F N  DI+    A+ F   I+K
Sbjct: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423

Query: 793 VSPQMRRHAKTINFSIIY 810
           VS + R   K +  ++ Y
Sbjct: 424 VSKEQRAIGKVMELALGY 441


>gi|254386231|ref|ZP_05001542.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194345087|gb|EDX26053.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 413

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 121/301 (40%), Gaps = 56/301 (18%)

Query: 579 VVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYDLSGEKFNLSSPKQ 628
           V ++M   G+    D  + +  E+           + L  L + I D  G +     P  
Sbjct: 14  VAAEMHRAGLPWRADTHRALLTELLGERYAGGGQPRRLAELADRISDAFGRRVRPDLPA- 72

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS- 687
             D++  K    +G K K+    T   ++++I   D+P ++ ++E+++L +I + +  S 
Sbjct: 73  --DVI--KAFAEAGIKLKS----TRRWEIQEI---DHPAVEPLVEFKKLYRIYTAHGWSW 121

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L + ++    R    +    T TGR  +       IP      + IRRA ++ P  +L+ 
Sbjct: 122 LADWVHD--GRFRPEFIPGGTFTGRWVTNGGGALQIP------KVIRRAVVADPGWRLVV 173

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD  Q+E R+LA I++     +V     D++  ++ + F  +        R  AK     
Sbjct: 174 ADADQMEPRVLAAISRDPAFMEVAGRPEDLYTAISRQGFAGD--------RDMAKLAVLG 225

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYF---HRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            +YG +              + D +K       RFP    Y+++      +   V T  G
Sbjct: 226 AVYGQT--------------SGDGLKNLAALRRRFPRAVAYVDEAAKAGEEGRLVRTWLG 271

Query: 865 R 865
           R
Sbjct: 272 R 272


>gi|108861996|ref|YP_654112.1| 13 [Enterobacteria phage K1-5]
 gi|40787082|gb|AAR90053.1| 13 [Enterobacteria phage K1-5]
          Length = 846

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 23/225 (10%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           N+ NIP +      +R  FI+   K ++  D + +ELR+L+H     P YQ      DIH
Sbjct: 541 NVVNIPARGLY--PLRDLFIAGKGKLILGCDGAGLELRVLSHFMN-DPEYQEIVLHGDIH 597

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
                     N  K     R  AKT  ++ +YG     LA    +   E  + + R+   
Sbjct: 598 TH--------NQMKAGLPKRDMAKTFIYAFLYGSGIANLAAVCGVTEEEMEEVVARFEVE 649

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            P +    E       + GY++   G   H+  I   + S   + E   +N  +Q + + 
Sbjct: 650 LPSLARLRENVIAQGNKFGYLQAPDG---HWGRI---RMSGGELKEHTMLNVLLQMTGSL 703

Query: 899 ITRRAMISVHKSLEDHKLATKML------LQIHDELVFEVPEEEI 937
             + A++     +    +A   +        +HDE+  EVPE+E+
Sbjct: 704 CMKYALVRAFAVMRKEGVALDSMGNPCGIANVHDEIQMEVPEDEV 748


>gi|83571734|ref|YP_424986.1| putative DNA polymerase [Enterobacteria phage K1E]
 gi|83308185|emb|CAJ29417.1| gp13 protein [Enterobacteria phage K1E]
          Length = 848

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 23/225 (10%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           N+ NIP +      +R  FI+   K ++  D + +ELR+L+H     P YQ      DIH
Sbjct: 541 NVVNIPARGLY--PLRDLFIAGKGKLILGCDGAGLELRVLSHFMN-DPEYQDIVLHGDIH 597

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
                     N  K     R  AKT  ++ +YG     LA    +   E  + + R+   
Sbjct: 598 TH--------NQMKAGLPKRDMAKTFIYAFLYGSGIANLAAVCGVTEEEMEEVVARFEVE 649

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            P +    E       + GY++   G   H+  I   + S   + E   +N  +Q + + 
Sbjct: 650 LPSLARLRENVIAQGNKFGYLQAPDG---HWGRI---RMSGGELKEHTMLNVLLQMTGSL 703

Query: 899 ITRRAMISVHKSLEDHKLATKML------LQIHDELVFEVPEEEI 937
             + A++     +    +A   +        +HDE+  EVPE+E+
Sbjct: 704 CMKYALVRAFAVMRKEGVALDSMGNPCGIANVHDEIQMEVPEDEV 748


>gi|47934742|gb|AAT39809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE I + +G++       FN  S KQ+ + L   L      KT+ G      + L+ I 
Sbjct: 38  VEERISEKTGKRLKDKVTIFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSI- 95

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P  K +  +  L K +    DS    + +   RVH        +TGR+  L PN+ 
Sbjct: 96  --DLPEAKAVARYMMLQK-RVAQIDSWLKAV-RDDGRVHGRVITNGAVTGRMTHLSPNMA 151

Query: 722 NIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            +P +    G + R  +      +L+  D S +ELR+LAH
Sbjct: 152 QVPAVSAPFGTECRSCWTVDGGNRLVGIDASGLELRMLAH 191


>gi|47934618|gb|AAT39747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 14/160 (8%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE I + +G++       FN  S KQ+ + L   L      KT+ G      + L+ I 
Sbjct: 38  VEERISEKTGKRLKDKVTIFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGI- 95

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P  K I  +  L K +    DS    + K   RVH        +TGR+  L PN+ 
Sbjct: 96  --DLPEAKXIARYMMLQK-RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMA 151

Query: 722 NIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            +P +    G + R  +       L+  D S +ELR+LAH
Sbjct: 152 QVPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAH 191


>gi|310818189|ref|YP_003950547.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309391261|gb|ADO68720.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 630

 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 163/417 (39%), Gaps = 103/417 (24%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEE-NIYDLSGEK-----FNLSSPKQLGDILFTK 636
           +   G+ +  +L K+V AE  +N +  +   I+   G K       L +    G+  +T 
Sbjct: 151 LRTNGVAV-AELRKRVEAEWQQNRIRFQAAGIFRADGSKDTKRLAALVTAAYGGNPPYTA 209

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD------SLPN 690
              PS A+   GQ    A D + +    +P+++++ +  ++ K KSTY D      SLP 
Sbjct: 210 ---PS-ARYPDGQ---IATDRDTLLGSGDPLLEDLGKSGKVDKYKSTYLDVVEAGVSLP- 261

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            IN R      F  L ST   R++S   + Q +P K      IR    + P     S DY
Sbjct: 262 -INPR------FNVLVSTT--RVSS---DYQQLPQKG----GIREVHEARPGYVFCSVDY 305

Query: 751 SQIELRILAHIA----KITPLYQVFENSLDIHRMVAAEIFGVNI----------EKVSPQ 796
             +ELR +A  A      + +     + LD+H + AAE  G +           + V+  
Sbjct: 306 GGLELRTMAQRAIWELGYSKMADALNSGLDVHTLAAAEFLGESYAGLLAKVKAKDPVAVA 365

Query: 797 MRRHAKTINF---------SIIYG------ISPFRLATQL------RIPRS--------- 826
            R+ AK +NF         S++Y       +S   LA +       R+P +         
Sbjct: 366 FRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADMCGVERVPVTVQRKPKMVC 425

Query: 827 -----EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI-- 879
                 A +  +++   +P   +   K K+     G  + +            P ++I  
Sbjct: 426 RTCVEVARELDEKWLAAWPEQRDLQRKAKSLTYGGGVADVMI-----------PGANILR 474

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHK----LATKMLLQIHDELVFEV 932
                   +N P QG  A   +  M  V + +   +      ++++L +HDEL+ E+
Sbjct: 475 GACGYTQILNTPFQGLGAVGCKLGMWRVSREMYTVRSSPLFGSRLVLNVHDELISEL 531


>gi|115374272|ref|ZP_01461557.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368693|gb|EAU67643.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 699

 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 163/417 (39%), Gaps = 103/417 (24%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEE-NIYDLSGEK-----FNLSSPKQLGDILFTK 636
           +   G+ +  +L K+V AE  +N +  +   I+   G K       L +    G+  +T 
Sbjct: 220 LRTNGVAV-AELRKRVEAEWQQNRIRFQAAGIFRADGSKDTKRLAALVTAAYGGNPPYTA 278

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD------SLPN 690
              PS A+   GQ    A D + +    +P+++++ +  ++ K KSTY D      SLP 
Sbjct: 279 ---PS-ARYPDGQ---IATDRDTLLGSGDPLLEDLGKSGKVDKYKSTYLDVVEAGVSLP- 330

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            IN R      F  L ST   R++S   + Q +P K      IR    + P     S DY
Sbjct: 331 -INPR------FNVLVSTT--RVSS---DYQQLPQKG----GIREVHEARPGYVFCSVDY 374

Query: 751 SQIELRILAHIA----KITPLYQVFENSLDIHRMVAAEIFGVNI----------EKVSPQ 796
             +ELR +A  A      + +     + LD+H + AAE  G +           + V+  
Sbjct: 375 GGLELRTMAQRAIWELGYSKMADALNSGLDVHTLAAAEFLGESYAGLLAKVKAKDPVAVA 434

Query: 797 MRRHAKTINF---------SIIYG------ISPFRLATQL------RIPRS--------- 826
            R+ AK +NF         S++Y       +S   LA +       R+P +         
Sbjct: 435 FRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADMCGVERVPVTVQRKPKMVC 494

Query: 827 -----EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI-- 879
                 A +  +++   +P   +   K K+     G  + +            P ++I  
Sbjct: 495 RTCVEVARELDEKWLAAWPEQRDLQRKAKSLTYGGGVADVMI-----------PGANILR 543

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHK----LATKMLLQIHDELVFEV 932
                   +N P QG  A   +  M  V + +   +      ++++L +HDEL+ E+
Sbjct: 544 GACGYTQILNTPFQGLGAVGCKLGMWRVSREMYTVRSSPLFGSRLVLNVHDELISEL 600


>gi|305662518|ref|YP_003858806.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
 gi|304377087|gb|ADM26926.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
          Length = 354

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 21/130 (16%)

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---------- 153
           A GIP I+          A   YIA+K G A    S D D +   +P             
Sbjct: 145 AMGIPVIQAAEEGE----AEAAYIAKK-GLAWATASQDYDSLLFGAPRLVRNLTITGKRK 199

Query: 154 -----LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
                +Y  +K E I++E ++K  GI  E+++ +  L G    N  G+ GIG KTA  L+
Sbjct: 200 LPGKDIYIEIKPEIIELEKLLKTLGITHEQLIDIAILIGTDY-NPDGVEGIGPKTAYQLI 258

Query: 209 QEYGNLENIL 218
           + YG+LE I+
Sbjct: 259 KAYGSLEKII 268


>gi|47934786|gb|AAT39831.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 14/160 (8%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE I + +G++       FN  S KQ+ + L   L      KT+ G      + L+ I 
Sbjct: 38  VEERISEKTGKRLKDKVTIFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGI- 95

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P  K +  +  L K +    DS    + K   RVH        +TGR+  L PN+ 
Sbjct: 96  --DLPEAKAVARYMMLQK-RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMA 151

Query: 722 NIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            +P +    G + R  +       L+  D S +ELR+LAH
Sbjct: 152 QVPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAH 191


>gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 645

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 32/151 (21%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-------------IKTD----------- 728
           +KR + +  FY   +  TGR A     +QN+P             +K+            
Sbjct: 303 DKRVRGLLQFY--GANRTGRWAGRLVQVQNLPQNHLKDLTLARNLVKSGDFDTLALLFES 360

Query: 729 ----LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
               L + IR AFI     + I AD+S IE R++A +A       VF     I+   A++
Sbjct: 361 VPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHGKIYEASASQ 420

Query: 785 IFGVNIEKV--SPQMRRHAKTINFSIIYGIS 813
           +F V IE++  +  +R+  K    ++ YG S
Sbjct: 421 MFKVPIEEITKTSALRQKGKISELALGYGGS 451


>gi|289812259|ref|ZP_06542888.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 84

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K R++ +  + E A L 
Sbjct: 3   GLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKK-LETHKEMAFLC 61

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           R +  L+TD+ I   L+ L L
Sbjct: 62  RDIARLQTDLHIDGNLQQLRL 82


>gi|47934730|gb|AAT39803.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934732|gb|AAT39804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934734|gb|AAT39805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E FN  S +Q+ + L  K   P    TK  +  +   D E +   D P  K + E+  L 
Sbjct: 56  EPFNPGSRQQIAERLIEKGWKP----TKRTEKGSVIVDEEVLASLDYPEAKALAEYMMLQ 111

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K +    DS    + K   RVH        +TGR+  + PN+  +P   +  G + R  +
Sbjct: 112 K-RIAQIDSWLEAVGK-DGRVHGRVITNGAVTGRMTHMSPNMAQVPNSGSPYGHECRDLW 169

Query: 738 ISPPTKKLISADYSQIELRILAH 760
                 KL+  D + +ELR+LAH
Sbjct: 170 TVEKGYKLVGIDAAGLELRMLAH 192


>gi|258622057|ref|ZP_05717084.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258585671|gb|EEW10393.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 353

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 24/215 (11%)

Query: 738 ISPPTKKLISA-DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           +SPPT  + +  DY Q E  I A ++    L  ++E   D++  +AA+I   N E     
Sbjct: 135 LSPPTGSVYALLDYEQQEPMIAASLSGCQSLMGMYERG-DVYTQLAADI--TNDEAS--- 188

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            R   K +  S I G      A +L +P +    ++     +   I  Y+       ++ 
Sbjct: 189 -RDVFKELLLSHINGTGVISAAEKLNLPEAVVRRWLIELKRKLQPIDSYLTHQVFLAQRR 247

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           G ++++  R  H+   +    SIRN         P+Q + ADI RRA  ++ ++      
Sbjct: 248 GLLQSLDWR--HFISPDQNNKSIRNW--------PLQATGADIMRRACFNLDEA------ 291

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
              +LL  HD  +  + EE   +  ++ V +++ A
Sbjct: 292 NIPLLLTNHDSFLVRLDEENQDSQLELAVKALKNA 326


>gi|29838472|gb|AAO93094.1| DNA polymerase [Bacillus phage Bastille]
          Length = 279

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKT------DLGQKIRRAFISP-PTKKLISADYS 751
           +H  ++   T T RL+S  PNLQN+P KT      D    I+RAF++      LI  DYS
Sbjct: 209 LHGSFNSEGTETSRLSSAAPNLQNLPRKTGDVFRFDYQHPIKRAFVTRFEGGALIQLDYS 268

Query: 752 QIELRILA 759
            +E R++A
Sbjct: 269 SLESRVMA 276


>gi|47934726|gb|AAT39801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E FN  S +Q+ + L  K   P    TK  +  +   D E +   D P  K + E+  L 
Sbjct: 56  EPFNPGSRQQIAERLIEKGWKP----TKRTEKGSVIVDEEVLASLDYPEAKALAEYMMLQ 111

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K +    DS    + K   RVH        +TGR+  + PN+  +P   +  G + R  +
Sbjct: 112 K-RIAQIDSWLEAVGK-DGRVHGRVITNGAVTGRMTHMSPNMAQVPNSGSPYGHECRDLW 169

Query: 738 ISPPTKKLISADYSQIELRILAH 760
                 KL+  D + +ELR+LAH
Sbjct: 170 TVEKGYKLVGIDAAGLELRMLAH 192


>gi|47934728|gb|AAT39802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E FN  S +Q+ + L  K   P    TK  +  +   D E +   D P  K + E+  L 
Sbjct: 57  EPFNPGSRQQIAERLIEKGWKP----TKRTEKGSVIVDEEVLASLDYPEAKALAEYMMLQ 112

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K +    DS    + K   RVH        +TGR+  + PN+  +P   +  G + R  +
Sbjct: 113 K-RIAQIDSWLEAVGK-DGRVHGRVITNGAVTGRMTHMSPNMAQVPNSGSPYGHECRDLW 170

Query: 738 ISPPTKKLISADYSQIELRILAH 760
                 KL+  D + +ELR+LAH
Sbjct: 171 TVEKGYKLVGIDAAGLELRMLAH 193


>gi|269956874|ref|YP_003326663.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305555|gb|ACZ31105.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
          Length = 546

 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 17/104 (16%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINK-----RTQRVHTFYSLASTMTGRLASLEPN 719
           +P+++ ++E+++LS++ +       N  N      R  R  + Y +   +TGR +S+   
Sbjct: 237 HPVVEPLMEYKKLSRLLTA------NGWNWLDTWVRDGRFRSEYVVGGVVTGRWSSVGGG 290

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
              +P      +++RRA ++ P   L+ AD +Q+E R+LA +++
Sbjct: 291 ALQLP------KEVRRAVVADPGWTLVVADVAQLEPRVLAAMSR 328


>gi|16266049|gb|AAL16725.1|AF358674_1 putative DNA polymerase I [Helicobacter hepaticus]
          Length = 77

 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132
           R +IY  YK NR   P+ LL QLP+     +  G   I I+G+EADD+IA+   +A  + 
Sbjct: 16  RRQIYDAYKRNRQPPPQELLMQLPIAIEWIEKMGFLNISIEGYEADDVIASINKVANAQN 75

Query: 133 F 133
            
Sbjct: 76  I 76


>gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 103/261 (39%), Gaps = 51/261 (19%)

Query: 587 GIQIDQDLLK---QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           GI+IDQ L+    +   E     L   + +  L+    N +SP QL + L  +     G 
Sbjct: 204 GIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTGLA----NPNSPLQLKNWLHQQ-----GV 254

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVH 700
           +T +    + AQ L Q   G    +  +L  RQL   S +K   A       +     + 
Sbjct: 255 ETDSLAKASVAQ-LLQTTTG---TVHQVLALRQLLSKSSVKKYQAMQKAMCKDGCVHGLL 310

Query: 701 TFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQK 732
            FY   +  TGR A     +QN+P                            +   L Q 
Sbjct: 311 QFY--GANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTALAMLYESVPDVLSQL 368

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AFI         AD+S +E R++A ++        F  + DI+   A+++FGV + K
Sbjct: 369 IRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDIYCASASQMFGVPVVK 428

Query: 793 --VSPQMRRHAKTINFSIIYG 811
             ++ ++R+  K    ++ YG
Sbjct: 429 HGINGELRQKGKIAELALGYG 449


>gi|118596594|dbj|BAF37956.1| putative flap endonuclease-1 [Sulfolobus sp. G81]
          Length = 304

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+++ ++KK G+  E+++ +  + G    N  GI G G KTA  +++
Sbjct: 152 PGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDY-NPDGIKGYGVKTAYRIIK 210

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           +YG+LE   I    I + K   N+ E        R L +   +  +  P E+L L DC+G
Sbjct: 211 KYGSLEKA-IEKGEIPKIKVNFNVEEI-------RSLFL---NPQVVEPKENLELADCDG 259

Query: 270 PRLISFL 276
            +++  L
Sbjct: 260 NKILDIL 266


>gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A]
 gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A]
          Length = 653

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 13/147 (8%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q +R  F +     L  +D+S IE R++A  AK      VF     I+   AA++FGV
Sbjct: 373 LSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASAAQMFGV 432

Query: 789 ---NIEKVSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPG 841
              +I+K  P +R+  K    ++ Y   P  L    A  + I  SE    +  +    P 
Sbjct: 433 PVDSIKKGDP-LRQKGKVSELALGYQGGPGALKAMGALDMGIDESELQGLVDSWRKANPN 491

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIH 868
           I  + +       Q+  +ET+  R+ H
Sbjct: 492 IVAFWKGC-----QDAAIETVRTRQTH 513


>gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
          Length = 661

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           +LE   + IP      Q IR AFI     + + +D+S IE R++A +A       VF   
Sbjct: 367 TLELLFEGIPFV--FSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEKWRLNVFRTH 424

Query: 775 LDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSIIYG 811
             I+   AA++F V IE +    ++R+  K    ++ YG
Sbjct: 425 GKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYG 463


>gi|47934714|gb|AAT39795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGI---DRPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           ++   DS    + K   RVH        +TGR+    PN+  +P +    G + R  +  
Sbjct: 112 RAAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNVLVGIDASGLELRMLAH 191


>gi|167565003|ref|ZP_02357919.1| putative phage exonuclease [Burkholderia oklahomensis EO147]
          Length = 264

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 71/182 (39%), Gaps = 27/182 (14%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           FR  IYP YK  R + PE   P    V    +    P     G EADD++   +      
Sbjct: 72  FRRGIYPPYKGARGEKPEQYKPLEDWVFENARVAWYP-----GLEADDVMGVLS------ 120

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           G    I S DKD+  +      LY T K++ + I      W          Q L GDS D
Sbjct: 121 GEDKVICSNDKDMKTVPGR---LYVTGKKKLVTITETRADW------QWMYQTLMGDSTD 171

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINA-------SRIKQKKRRENILEYAETARLSR 244
              G  G G   A  +L+   +L+ +  NA        + K K   +  L++   A L+R
Sbjct: 172 GFGGCVGCGESGAERVLEGCRSLKEMAHNAVLRYLEPKKGKYKDVTQTALDFRRMAVLAR 231

Query: 245 KL 246
            L
Sbjct: 232 IL 233


>gi|229472507|gb|ACQ72768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 28/192 (14%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           + R  F+  P + +++AD S IELR+L+H +AK       +++      ++  +   VN 
Sbjct: 10  RFRALFLPSPGQVMVAADLSGIELRMLSHFLAK-------YDDGRYADILLNGDTHQVNA 62

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 63  DKIGIS-RKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGLDK 121

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +   K    + G+++ I GR+I  D   SP           A+N  +QG++A + +R M
Sbjct: 122 LLAAIKT-ASERGFIKAIDGRKIMVD---SPHK---------ALNYCLQGNSAILAKRWM 168

Query: 905 ISVHKSLEDHKL 916
           +   ++++D  L
Sbjct: 169 VINQQNIKDLNL 180


>gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T]
          Length = 714

 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI T L   +R  FI+ P KK +  D+S IE  +LA +A+     +VF     I+ M A+
Sbjct: 458 PI-TLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRLEVFRTHGKIYEMSAS 516

Query: 784 EIFGVNIEKV 793
           +I GV  E++
Sbjct: 517 KISGVPFEEM 526


>gi|213021568|ref|ZP_03336015.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 70

 Score = 46.2 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I H + + C     + VPL
Sbjct: 1   AMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC---TRIDVPL 56

Query: 963 KVNIKVSNNWQE 974
            V +    NW +
Sbjct: 57  LVEVGSGENWDQ 68


>gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C]
          Length = 686

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           ++   PI T L   +R  FI+ P KK +  D+S IE  +LA +A+     +VF     I+
Sbjct: 363 DIWGDPI-TLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVFRTHGKIY 421

Query: 779 RMVAAEIFGVNIEKV 793
            M A++I GV  E++
Sbjct: 422 EMSASKISGVPFEEM 436


>gi|47934738|gb|AAT39807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 14/160 (8%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE I + +G++       FN  S KQ+ + L   L      KT+ G      + L+ I 
Sbjct: 38  VEERISEKTGKRLKDKVTIFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGI- 95

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P  K +  +  L K  +     L     K   RVH        +TGR+  L PN+ 
Sbjct: 96  --DLPEAKAVARYMMLQKRVAQIGSWL--KAVKDDGRVHGRVITNGAVTGRMTHLSPNMA 151

Query: 722 NIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            +P +    G + R  +       L+  D S +ELR+LAH
Sbjct: 152 QVPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAH 191


>gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVFENSL--DIHRMVAAEIF 786
           +R   I+PP KKL+ +D S IE R+LA +A    K+   +  F+N    D++++  A  F
Sbjct: 186 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNA-FSEFDNGKGDDLYKLAYARAF 244

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYG 811
            +  E V+ + R+  K +   + YG
Sbjct: 245 NLLPEDVTKEQRQIGKVMELGLGYG 269


>gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVFENSL--DIHRMVAAEIF 786
           +R   I+PP KKL+ +D S IE R+LA +A    K+   +  F+N    D++++  A  F
Sbjct: 186 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNA-FSEFDNGKGDDLYKLAYARAF 244

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYG 811
            +  E V+ + R+  K +   + YG
Sbjct: 245 NLLPEDVTKEQRQIGKVMELGLGYG 269


>gi|123494006|ref|XP_001326419.1| XPG I-region family protein [Trichomonas vaginalis G3]
 gi|121909333|gb|EAY14196.1| XPG I-region family protein [Trichomonas vaginalis G3]
          Length = 414

 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 14/116 (12%)

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY- 155
           L R A + F  P      +EAD   A   Y+A K G+   ++S D DL+    PTT L  
Sbjct: 137 LQRNAVEYFVAP------YEAD---AQLVYLA-KSGYVDAVLSEDSDLIAYQCPTTLLKF 186

Query: 156 -DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
            DT    +ID ++V+K  G+P +    L  L G   D I  I  +G KTA   L++
Sbjct: 187 DDTYHVLQIDFQNVLKLIGLPADTFTSLCILAG--CDYIDHIDKLGPKTALKFLKD 240


>gi|47934756|gb|AAT39816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + L+ I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGI---DLPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNSLVGIDASGLELRMLAH 191


>gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
 gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
          Length = 763

 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R   I    KK + ADYS +E R LA IA       VF+   DI+   A ++FG++ E 
Sbjct: 396 VRGCIIPAKGKKFVVADYSNVEGRGLAWIAGEKTALMVFKAGRDIYCETAGKMFGLDPEY 455

Query: 793 VSPQ---MRRHAKTINFSIIYG 811
           +      +R+  K     + YG
Sbjct: 456 IKANRKDLRQIGKACELGLGYG 477


>gi|47934748|gb|AAT39812.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934754|gb|AAT39815.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934758|gb|AAT39817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934760|gb|AAT39818.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934800|gb|AAT39838.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + L+ I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGI---DLPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNSLVGIDASGLELRMLAH 191


>gi|47934762|gb|AAT39819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + L+ I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGI---DLPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNSLVGIDASGLELRMLAH 191


>gi|47934736|gb|AAT39806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + L+ I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGI---DLPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGSSLVGIDASGLELRMLAH 191


>gi|47934662|gb|AAT39769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGI---DRPEAKAVAHYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVVTNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNVLVGIDASGLELRMLAH 191


>gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
 gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
          Length = 681

 Score = 45.4 bits (106), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFG 787
           +R   ++P  K+L  +D S IE R  A +A      Q F +       D++++  A  FG
Sbjct: 361 VRGTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFG 420

Query: 788 VNIEKVSPQMRRHAKTINFSIIY--GISPF 815
           V +E V   MR+  K +  ++ Y  G+  F
Sbjct: 421 VAVEAVDKYMRQLGKVMELALAYEGGVGAF 450


>gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3]
          Length = 502

 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVFENSL--DIHRMVAAEIF 786
           +R   I+PP KKL+ +D S IE R+LA +A    K+   +  F+N    D++++  A  F
Sbjct: 186 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNA-FSEFDNGKGDDLYKLAYARAF 244

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYG 811
            +  E V+ + R+  K +   + YG
Sbjct: 245 NLLPEDVTKEQRQIGKVMELGLGYG 269


>gi|262342201|gb|ACY54611.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.4 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 39/220 (17%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSL- 775
           PNL  +P   +      R+   P    L + +D S +ELR L H        +  E  + 
Sbjct: 1   PNLAQVPSAHEY-----RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVN 55

Query: 776 -DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA----- 829
            DIH  +A EI+G +        R+  K + + +IYG    +L       +S A+     
Sbjct: 56  GDIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQE 106

Query: 830 --DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
               I +    F  ++  I++      ++G ++ + GR I     N            AA
Sbjct: 107 IRGKIMQGLSGFADLNAAIQERA----KSGVLKGLDGRPIRLQGKN-----------HAA 151

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +N P+Q + A I +  +I  H+ L++  +   +L  IHDE
Sbjct: 152 LNYPLQSAGAIICKLWVIRTHELLQEAGIDYYLLAFIHDE 191


>gi|167945574|ref|ZP_02532648.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 58

 Score = 45.4 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           LE+  ++L+G  FN++SPKQ+G I F +L  P  AKT  G   T    L+++
Sbjct: 4   LEQQAHELAGHSFNMASPKQIGHIFFEELGLPVIAKTPKGAPSTAESVLQEL 55


>gi|139473888|ref|YP_001128604.1| phage DNA polymerase [Streptococcus pyogenes str. Manfredo]
 gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2]
 gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q +R A ++        +D+S IE R++A  A       VF     I+   A+++FG+
Sbjct: 365 LKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFGI 424

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            IE++  ++R+  K    ++ Y   P  L
Sbjct: 425 PIEEIDKELRQKGKISELALGYQGGPGAL 453


>gi|315518944|dbj|BAJ51821.1| exonuclease-like protein [Ralstonia phage RSB2]
          Length = 287

 Score = 45.4 bits (106), Expect = 0.052,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 21/179 (11%)

Query: 37  AIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI----PEMLL 92
           A   FCN +  L   SR+ S A       D     +R ++ P YKA R  +    P    
Sbjct: 36  AKEAFCNQVEALRSRSRRWSTAKVIMCFTD--DYNWRKDVLPSYKAARSGVGKGKPIAYW 93

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATY-TYIAEKEGFAVTIISTDKDLMQLVSPT 151
             +  ++   + F  P     G E DD +    T  +  +     I+S DKD   +  P 
Sbjct: 94  LLVEWIKENFECFQRP-----GLEGDDCMGILSTKPSLIDCTHTIIVSPDKDFKTI--PG 146

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
              + T  E  +  E     W +        Q L GD+ D   G PGIG  +AA  L E
Sbjct: 147 EFFWMTTGESLVLTEEDANYWHM-------YQTLMGDTTDGYAGCPGIGPGSAAEFLAE 198


>gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047]
 gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q +R A ++        +D+S IE R++A  A       VF     I+   A+++FG+
Sbjct: 365 LKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFGI 424

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            IE++  ++R+  K    ++ Y   P  L
Sbjct: 425 PIEEIDKELRQKGKISELALGYQGGPGAL 453


>gi|47934606|gb|AAT39741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 45.4 bits (106), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + LE I   D P  K +  +  L K 
Sbjct: 58  FNPGSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGI---DRPEAKAVAHYMMLQK- 112

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R  +  
Sbjct: 113 RVAQIDSWLKAV-KDDGRVHGRVVTNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTV 171

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 172 DEGNVLVGIDASGLELRMLAH 192


>gi|47934788|gb|AAT39832.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 14/160 (8%)

Query: 609 LEENIYDLSGEK-------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +EE I + +G++       FN  S KQ+ + L   L      KT+ G      + L+ I 
Sbjct: 38  VEERISEKTGKRLKDKVTIFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGI- 95

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P  K +  +  L K +    DS    +     RVH        +TGR+  L PN+ 
Sbjct: 96  --DLPEAKAVARYMMLQK-RVAQIDSWLKAVXD-DGRVHGRVITNGAVTGRMTHLSPNMA 151

Query: 722 NIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            +P +    G + R  +       L+  D S +ELR+LAH
Sbjct: 152 QVPAVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAH 191


>gi|47934628|gb|AAT39752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + L+ I   D P  K +  +  L K 
Sbjct: 50  FNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGI---DLPEAKAVARYMMLQK- 104

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +  
Sbjct: 105 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTV 163

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 164 DEGNSLVGIDASGLELRMLAH 184


>gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
 gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q +R A ++        +D+S IE R++A  A       VF     I+   A+++FG+
Sbjct: 368 LKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFGI 427

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            IE++  ++R+  K    ++ Y   P  L
Sbjct: 428 PIEEIDKELRQKGKISELALGYQGGPGAL 456


>gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score = 45.1 bits (105), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 426 TIFIDLSVHTSQDSTGKNTL-------TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
           T F      T+    GKN L        +++L   K++FE+    K+ HN  +DK VL R
Sbjct: 657 TCFSIYCGPTADFGDGKNRLWIDVLDGGEDVLKVFKRYFESPSIKKVWHNYSFDKHVLGR 716

Query: 479 YGISMRGFE-DIMLMSYVLDSGR 500
           +GI  +GF  D + ++ + DS R
Sbjct: 717 HGIHPQGFHADTIHLARLYDSAR 739


>gi|47934724|gb|AAT39800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGI---DRPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNVLVGIDASGLELRMLAH 191


>gi|47934716|gb|AAT39796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGI---DRPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNVLVGIDASGLELRMLAH 191


>gi|38707869|ref|NP_944975.1| Putative exodeoxyribonuclease [Enterobacteria phage Felix 01]
 gi|33340472|gb|AAQ14823.1| putative exodeoxyribonuclease [Enterobacteria phage Felix 01]
          Length = 348

 Score = 45.1 bits (105), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 22/106 (20%)

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEH 167
           + GFEAD I+      AEK G    ++S DKDL Q    T C+ D   E+     I   +
Sbjct: 166 LDGFEADSIVIA---KAEKMGKKAALMSIDKDLRQ-AEGTYCI-DMTYEKSPLIFIADNN 220

Query: 168 VIKKWGIP----PE---------KMVCLQALTGDSIDNIPGIPGIG 200
           V + W  P    P+         K +C QA+ GD+ DN  G+ G+G
Sbjct: 221 VGEIWDCPIKSTPKAKKTVGVGFKFLCYQAVAGDNADNYFGLKGVG 266


>gi|47934720|gb|AAT39798.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGI---DRPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNVLVGIDASGLELRMLAH 191


>gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9]
 gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9]
          Length = 640

 Score = 45.1 bits (105), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q +R A ++        +D+S IE R++A  A       VF     I+   A+++FG+
Sbjct: 365 LKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFGI 424

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            IE++  ++R+  K    ++ Y   P  L
Sbjct: 425 PIEEIDKELRQKGKISELALGYQGGPGAL 453


>gi|47934718|gb|AAT39797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGI---DRPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNVLVGIDASGLELRMLAH 191


>gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
 gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
          Length = 640

 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q +R A ++        +D+S IE R++A  A       VF     I+   A+++FG+
Sbjct: 365 LKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFGI 424

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            IE++  ++R+  K    ++ Y   P  L
Sbjct: 425 PIEEIDKELRQKGKISELALGYQGGPGAL 453


>gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVFENSL--DIHRMVAAEIF 786
           +R   I+PP KKL+ +D S IE R+LA +A    K+   +  F+N    D++++  A  F
Sbjct: 186 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNA-FSEFDNGKGDDLYKLAYARAF 244

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYG 811
            +  E V+   R+  K +   + YG
Sbjct: 245 NLLPEDVTKDQRQIGKVMELGLGYG 269


>gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
 gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q +R A ++        +D+S IE R++A  A       VF     I+   A+++FG+
Sbjct: 365 LKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFGI 424

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            IE++  ++R+  K    ++ Y   P  L
Sbjct: 425 PIEEIDKELRQKGKISELALGYQGGPGAL 453


>gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes
           MGAS315]
 gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage
           315.6]
 gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q +R A ++        +D+S IE R++A  A       VF     I+   A+++FG+
Sbjct: 365 LKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFGI 424

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            IE++  ++R+  K    ++ Y   P  L
Sbjct: 425 PIEEIDKELRQKGKISELALGYQGGPGAL 453


>gi|291334901|gb|ADD94538.1| exonuclease [uncultured phage MedDCM-OCT-S08-C159]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 22/182 (12%)

Query: 67  YPAVTFRNEIYPDYKANR--PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           YP  TFR+EI+P+YK NR   + P  L   +  ++   ++   P       E DD++   
Sbjct: 66  YP--TFRHEIFPEYKMNRIGKRKPLALKSIIKKIKNEYESAAYP-----NLEGDDVLGLL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               + +     I+S DKD+  +  P   +      ++ +I H+ +K     ++     +
Sbjct: 119 ATNGQYKN--PIIVSVDKDMKTI--PCKLI------QEDEILHITEK---KADRHWFEMS 165

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS D I G+ G+G  TA+  L    +  + L +  +    K+  +I +    ARL+R
Sbjct: 166 LAGDSGDGIAGLKGMGMVTASKTLANTPDTRDALWSKVQETYTKKGYSIADAILNARLTR 225

Query: 245 KL 246
            L
Sbjct: 226 IL 227


>gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45
 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1]
          Length = 993

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVFENSL--DIHRMVAAEIF 786
           +R   I+PP KKL+ +D S IE R+LA +A    K+   +  F+N    D++++  A  F
Sbjct: 371 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVN-AFSEFDNGKGDDLYKLAYARAF 429

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYG 811
            +  E V+ + R+  K +   + YG
Sbjct: 430 NLLPEDVTKEQRQIGKVMELGLGYG 454


>gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAK---ITPLYQVFENSL--DIHRMVAAEIFG 787
           +R   I+PP KKL+ +D S IE R+LA +A        +  F+N    D++++  A  F 
Sbjct: 186 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFN 245

Query: 788 VNIEKVSPQMRRHAKTINFSIIYG 811
           +  E V+   R+  K +   + YG
Sbjct: 246 LLPEDVTKDQRQIGKVMELGLGYG 269


>gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score = 44.7 bits (104), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAK---ITPLYQVFENSL--DIHRMVAAEIFG 787
           +R   I+PP KKL+ +D S IE R+LA +A        +  F+N    D++++  A  F 
Sbjct: 186 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFN 245

Query: 788 VNIEKVSPQMRRHAKTINFSIIYG 811
           +  E V+   R+  K +   + YG
Sbjct: 246 LLPEDVTKDQRQIGKVMELGLGYG 269


>gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4]
          Length = 773

 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVFENSL--DIHRMVAAEIF 786
           +R   I+PP KKL+ +D S IE R+LA +A    K+   +  F+N    D++++  A  F
Sbjct: 151 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVN-AFSEFDNGKGDDLYKLAYARAF 209

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYG 811
            +  E V+ + R+  K +   + YG
Sbjct: 210 NLLPEDVTKEQRQIGKVMELGLGYG 234


>gi|332796311|ref|YP_004457811.1| XPG I domain-containing protein [Acidianus hospitalis W1]
 gi|332694046|gb|AEE93513.1| XPG I domain protein [Acidianus hospitalis W1]
          Length = 344

 Score = 44.7 bits (104), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 103 QAFGIPAI----EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS------PTT 152
           +A GIP +    E +   A      YT+ A  + +   +   +K +  L        P  
Sbjct: 135 EAMGIPVVQAPSEGEAEAAYLCSQGYTWAAASQDYDSLLFGANKLIRNLTLTGKRKLPKK 194

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            +Y  +K E I++E ++KK+GI  E++V +  L G   D   GI GIG  TA  ++++YG
Sbjct: 195 DVYVEIKPELIELEDLLKKFGITREQLVDIGILIGTDYDP-DGIKGIGPVTALRIIKKYG 253

Query: 213 NLE 215
            +E
Sbjct: 254 KIE 256


>gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont
           phage 1]
          Length = 415

 Score = 44.7 bits (104), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVFENSL--DIHRMVAAEIF 786
           +R   I+PP KKL+ +D S IE R+LA +A    K+   +  F+N    D++++  A  F
Sbjct: 206 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNA-FSEFDNGKGDDLYKLAYARAF 264

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYG 811
            +  E V+   R+  K +   + YG
Sbjct: 265 NLLPENVTKAQRQIGKVMELGLGYG 289


>gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 704

 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 139/335 (41%), Gaps = 62/335 (18%)

Query: 424 VETIFIDLS--------VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KL 474
           V+ I IDL         +H   +S G  T  +E L+       N     +GH++ ++ + 
Sbjct: 76  VQVIVIDLGWTAKERSRIHQKLESLGFWTTLQERLA-------NPQVEVVGHSLDFEQRW 128

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSG---------RSSHDIASIAQKWLSYTRKEILKSRK 525
           +L +Y   +R   D  LMS V  +G            H + S+  +        I KSR+
Sbjct: 129 MLAKYNFPIRNLRDTKLMSQVYWAGLDPWLLKQHGKPHSLESVCLR----LGISIDKSRQ 184

Query: 526 SS------IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER--LDKPMI 577
           +S      +   ++S++Q   +A  ++++ +++  LL P+L   K + V+    ++    
Sbjct: 185 TSDWGWGDLGNGQLSNNQFN-YAANDASITIKVHDLLEPRL---KEIGVWTSYLIECAAS 240

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF-NLSSPKQLGDILFTK 636
              +QM   G+ +D+ +L  V+        SL E +     E   +L SPK+L  ++  +
Sbjct: 241 PAFAQMSHYGMPVDEGVLADVTVAYEAAYQSLVEQLGGTFSECLPHLYSPKKLIALINRR 300

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST--YADSLPN-HIN 693
            +                  L+  N  D   +  I E R +S IK+T  Y D L +    
Sbjct: 301 FRV----------------TLKSANVDDLSKLWGIPEVRLISVIKTTKTYVDYLHSIQAQ 344

Query: 694 KRTQRVHTFYS-LASTMTGRLASLEPNLQNIPIKT 727
            R   V   Y+ +     GR +  EPNLQN P  T
Sbjct: 345 VRNGFVRGKYTQINRKGFGRSSCSEPNLQNPPSPT 379


>gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 579

 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAK---ITPLYQVFENSL--DIHRMVAAEIFG 787
           +R   I+PP KKL+ +D S IE R+LA +A        +  F+N    D++++  A  F 
Sbjct: 371 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFN 430

Query: 788 VNIEKVSPQMRRHAKTINFSIIYG 811
           +  E V+   R+  K +   + YG
Sbjct: 431 LLPEDVTKDQRQIGKVMELGLGYG 454


>gi|47934666|gb|AAT39771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L       T+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-KGLGVTFNKMTEKGNIIVDEKVLEGI---DRPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R+ +  
Sbjct: 112 RVAQIDSWLGAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRQCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNVLVGIDASGLELRMLAH 191


>gi|47934722|gb|AAT39799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGI---DRPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVPAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNVLVGIDASGLELRMLAH 191


>gi|47934658|gb|AAT39767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L       T+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-KGLGVTFNKMTEKGNIIVDEKVLEGI---DRPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R+ +  
Sbjct: 112 RVAQIDSWLGAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRQCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNVLVGIDASGLELRMLAH 191


>gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 644

 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L + IR AFI     + I AD+S IE R++A +A      +VF     I+   A+++F V
Sbjct: 365 LSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRNEVFATHGKIYEASASQMFNV 424

Query: 789 NIEKV---SPQMRRHAKTINFSIIYGIS 813
            +E++   SP +R+  K    ++ YG S
Sbjct: 425 PLEEIDKGSP-LRQKGKISELALGYGGS 451


>gi|219681356|ref|YP_002456120.1| putative exodeoxyribonuclease [Erwinia phage phiEa21-4]
 gi|327198485|ref|YP_004327073.1| putative exodeoxyribonuclease [Erwinia phage phiEa104]
 gi|199580623|gb|ACH89010.1| putative exodeoxyribonuclease [Erwinia phage phiEa21-4]
 gi|311875181|emb|CBX44441.1| putative exodeoxyribonuclease [Erwinia phage phiEa104]
          Length = 357

 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 20/136 (14%)

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---------TTCLYDTVKEEKID 164
           GFEAD   A    + E++G    I+S DKDL QL+              +++TV     D
Sbjct: 176 GFEAD---AAVIAMGERKGKRAVILSLDKDLRQLMGGYMLDMSYDKAPLIFNTVDNPLGD 232

Query: 165 IEH--VIKKWGIPPE------KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
           +    +  K   PP+      K +C QAL GD  D   GI G+G      LL E   +  
Sbjct: 233 VWRCPIKSKPKQPPKYVGCGFKWLCYQALAGDPSDGYYGISGVGGAAIIKLLDECETIHQ 292

Query: 217 ILINASRIKQKKRREN 232
            L     + +KK  E 
Sbjct: 293 CLDAIYALYKKKFPEG 308


>gi|158345045|ref|YP_001522810.1| putative DNA polymerase A [Pseudomonas phage LKD16]
 gi|114796398|emb|CAK25954.1| putative DNA polymerase A [Pseudomonas phage LKD16]
          Length = 808

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 24/166 (14%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTD----LGQKIRRAFIS--PPTKKLISADYSQ 752
           +H   +  +T T RL+S  PNLQ +P K +     G +++  F+S   P   L   DY+ 
Sbjct: 461 IHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGPDGMLGETDYTA 520

Query: 753 IELRILAHIAKITPLYQVFENSLDIH--RMVAAE--IFGVNIE-----KVSPQMRRHAKT 803
           +E+ +LA ++K   L +      D+H  R+        G + +     K  P    H + 
Sbjct: 521 LEVVMLAALSKDRNLLEKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHEWHGRV 580

Query: 804 IN---------FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           +          FS  YG S   +A        EA +++      FP
Sbjct: 581 MQARKKIKPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFP 626


>gi|47934630|gb|AAT39753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 239

 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+H   +    +TGR+    PN+  IP  +      R+ F+ P   KL+  D S +ELR+
Sbjct: 171 RIHGRVNTCGAVTGRMTHSSPNMAQIPSDS----LYRQCFVVPEGSKLVGIDASGLELRM 226

Query: 758 LAH 760
           LAH
Sbjct: 227 LAH 229


>gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2]
 gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2]
 gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 993

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAK---ITPLYQVFENSL--DIHRMVAAEIFG 787
           +R   I+PP KKL+ +D S IE R+LA +A        +  F+N    D++++  A  F 
Sbjct: 371 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFN 430

Query: 788 VNIEKVSPQMRRHAKTINFSIIYG 811
           +  E V+   R+  K +   + YG
Sbjct: 431 LLPEDVTKDQRQIGKVMELGLGYG 454


>gi|312137188|ref|YP_004004525.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
 gi|311224907|gb|ADP77763.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
          Length = 327

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 11/119 (9%)

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT----CLYDTVK 159
           A GIP I+      ++  A   Y+  K G A  + S D D +   +P       +   + 
Sbjct: 141 AMGIPYIQ----APNEGEAQAVYLV-KNGDAWAVASQDYDCLLFGAPRVIRNLAISSDIN 195

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
            E ++++ ++KK GI  E+++ +  L G   +  PG+ GIG K    L++++G++  ++
Sbjct: 196 LELLELDKILKKLGISREQLIDIALLVGTDFN--PGVKGIGAKRGLELIKKFGDIYTVI 252


>gi|284162570|ref|YP_003401193.1| XPG I domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012567|gb|ADB58520.1| XPG I domain protein [Archaeoglobus profundus DSM 5631]
          Length = 335

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  VK E ID+E+ +KK GI  E+++ +  L G   D   G+ GIG K A   ++
Sbjct: 194 PGKNVYTEVKPEVIDLEYNLKKLGITREQLIDIALLVG--TDYNEGVEGIGVKKAYKYVK 251

Query: 210 EYGNLENIL 218
            YG++  +L
Sbjct: 252 AYGDIFKVL 260


>gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82]
          Length = 975

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE-----NSLDIHRMVAAEIFG 787
           +R   I+P  KKL+ +D S IE R+LA +A        F         D++++  A+ +G
Sbjct: 372 LRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKLAYAKAYG 431

Query: 788 VNIEKVSPQMRRHAKTINFSII 809
           + +E+V+   R+  K +  + I
Sbjct: 432 IEVERVTKDQRQIGKVLELACI 453


>gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
 gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
 gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
 gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
          Length = 339

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  VK E I +E  +K  GI  E++V +  L G   D   GI G+G KTA  L++
Sbjct: 197 PRKNVYVDVKPEIILLEENLKNLGISREQLVDIGILVG--TDYNEGIKGVGPKTALKLIK 254

Query: 210 EYGNLENIL 218
           +YG+LE I+
Sbjct: 255 KYGSLEKII 263


>gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
 gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
          Length = 339

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  VK E I +E  +K  GI  E++V +  L G   D   GI G+G KTA  L++
Sbjct: 197 PRKNVYVDVKPEIILLEENLKNLGISREQLVDIGILVG--TDYNEGIKGVGPKTALKLIK 254

Query: 210 EYGNLENIL 218
           +YG+LE I+
Sbjct: 255 KYGSLEKII 263


>gi|32442311|gb|AAP82226.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 156/378 (41%), Gaps = 76/378 (20%)

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++ I+++ V L+L+ LL+ ++   +    Y +L+  M  +++Q E +G + D D   +V 
Sbjct: 66  DYCIQDTQVTLRLYELLQRRM---ETYADYIKLEMDMAMLMAQQEASGFRFDMDAAVRVR 122

Query: 600 AEISKNLLSLEENIYDL----SGEKFNLS--------------------SPKQLGDILFT 635
           A++     S+   I  +     G+ F                       +P    +I + 
Sbjct: 123 AQLQDEFDSITNAIAQIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQNIAWA 182

Query: 636 KLKFPSGAK----TKTGQWKTTAQDLEQI-----NCGDNPI---------IKNILEW-RQ 676
              F  GA+    T+TG+ K     L ++     + G+  +         +  + +W  Q
Sbjct: 183 LQTF-RGARFTRVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQKWLGQ 241

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI 733
           LS+  +++ +S+          +H   +L ST TGR A   PNL  +   P   +L    
Sbjct: 242 LSEGTNSWFNSIEGDGC-----IHHSCTL-STQTGRNAHRGPNLGQVVSAPWAREL---- 291

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
              F+  P   ++ AD   +ELR+L H          F++      +V  +I   N ++V
Sbjct: 292 ---FVPHPGHIMVGADLEGLELRLLGHY------LAAFDSGSFAEVVVNGDIHQQNADRV 342

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA------ADYIKRYFHRFPGIHEYIE 847
               R   KT+ ++ IYG    +L   L+   S+A       +  +++    PG+   ++
Sbjct: 343 GC-TRTQVKTLTYAFIYGAGDVKLGHSLQPELSDAQKKTLGGELRRKFLDAIPGLEPLVD 401

Query: 848 KTKNFVRQNGYVETIFGR 865
             K  VR  G ++ + GR
Sbjct: 402 AVKLKVRSTGRLKGLDGR 419


>gi|255713056|ref|XP_002552810.1| KLTH0D01980p [Lachancea thermotolerans]
 gi|238934190|emb|CAR22372.1| KLTH0D01980p [Lachancea thermotolerans]
          Length = 1223

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 48/246 (19%)

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILA-------HIAKITPL-YQVFENS--- 774
           K  +G +++    +PP    + AD    EL I +       +I   TP+ +   E S   
Sbjct: 646 KNRIGSELKAQVQAPPGYVFVGADVDSEELWIASLVSDSVFNIHGGTPIGWMCLEGSKSE 705

Query: 775 -LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSE 827
             D+H   A +I G +        R  AK  N+  IYG    + ATQL       +   E
Sbjct: 706 GTDMHTKTA-QILGCS--------RNEAKIFNYGRIYGAG-VKFATQLLKNFNPGLTDYE 755

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVR--QNGYVETIFGRRIHYDEINSPKSSI------ 879
           A +  ++ +    G+   ++++K F +   +G    +F +  H  E  +P++ +      
Sbjct: 756 AKETAEKLYSSTKGL---VKRSKTFKKFWYSGSESILFNKLEHIAEQAAPRTPVLGAGIT 812

Query: 880 ---------RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                     N    + IN  IQ S  D       S++  ++   L  ++ L IHDE+ F
Sbjct: 813 SSLMKGNLGSNTFLPSRINWAIQSSGVDYLHLLCCSMNYLIKKFSLRARLALSIHDEIRF 872

Query: 931 EVPEEE 936
              E++
Sbjct: 873 LTAEKD 878


>gi|159475852|ref|XP_001696028.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
 gi|158275199|gb|EDP00977.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
          Length = 498

 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            E  FID++  T      +      IL+  K+FFE+    K+ HN  +D+ VL   GI+ 
Sbjct: 209 TEVAFIDVTSETPV----RLKPHHPILAEFKRFFEHAGVKKVWHNYGFDRHVLENMGIAA 264

Query: 484 RGF-EDIMLMSYVLDSGRSS 502
            GF  D + M+ + D+ RS 
Sbjct: 265 AGFGGDTLHMARLADASRSG 284


>gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           LL3]
          Length = 648

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 101/259 (38%), Gaps = 48/259 (18%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK-LKFPSGAKT 645
           G++ID DL+K   A   +    L     +L+G   N +S  QL   L  K L   S AK 
Sbjct: 204 GVRIDADLVKHAIACDEQYQAGLMVEAKELTGLP-NPNSTAQLKTWLEDKGLSVSSLAKD 262

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQ---LSKIKSTYADSLPNHINKRTQRVHTF 702
           K           E I   D+  +  +L  RQ    + +K   A       + R + +  F
Sbjct: 263 KIE---------ELIEKTDDASVHRVLRLRQEMAKTSVKKYLAMEKALCPDSRVRGLLQF 313

Query: 703 YSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIR 734
           Y   ++ TGR A     +QN+P                            +   L Q +R
Sbjct: 314 Y--GASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEAIELLYGQVPFVLSQLVR 371

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE--- 791
            AFI     +   +D+S IE R++A +A       VF     I+   AA++F V +E   
Sbjct: 372 TAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKIYEASAAQMFKVPVESIT 431

Query: 792 KVSPQMRRHAKTINFSIIY 810
           K SP +R+  K    ++ Y
Sbjct: 432 KGSP-LRQKGKVAELALGY 449


>gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
          Length = 648

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 101/259 (38%), Gaps = 48/259 (18%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK-LKFPSGAKT 645
           G++ID DL+K   A   +    L     +L+G   N +S  QL   L  K L   S AK 
Sbjct: 204 GVRIDADLVKHAIACDEQYQAGLMVEAKELTGLP-NPNSTAQLKKWLEDKGLSVSSLAKD 262

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQ---LSKIKSTYADSLPNHINKRTQRVHTF 702
           K           E I   D+  +  +L  RQ    + +K   A       + R + +  F
Sbjct: 263 KIE---------ELIEKTDDASVHRVLRLRQEMAKTSVKKYLAMEKALCPDSRVRGLLQF 313

Query: 703 YSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIR 734
           Y   ++ TGR A     +QN+P                            +   L Q +R
Sbjct: 314 Y--GASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEAIELLYGQVPFVLSQLVR 371

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE--- 791
            AFI     +   +D+S IE R++A +A       VF     I+   AA++F V +E   
Sbjct: 372 TAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKIYEASAAQMFKVPVESIT 431

Query: 792 KVSPQMRRHAKTINFSIIY 810
           K SP +R+  K    ++ Y
Sbjct: 432 KGSP-LRQKGKVAELALGY 449


>gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 673

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R   I+   KKL+ AD + IE R+LA IA        F N  DI++   ++ F + +  
Sbjct: 362 VRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFNIPLSN 421

Query: 793 VSPQMRRHAKTINFSIIY 810
           V+   R   K +  ++ Y
Sbjct: 422 VTKDQRAIGKVMELALGY 439


>gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5]
          Length = 773

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAK---ITPLYQVFENSL--DIHRMVAAEIFG 787
           +R   I+PP KKL+ +D S IE R+LA +A        +  F+N    D++++  A  F 
Sbjct: 151 LRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFN 210

Query: 788 VNIEKVSPQMRRHAKTINFSIIYG 811
           +  E V+   R+  K +   + YG
Sbjct: 211 LLPEDVTKDQRQIGKVMELGLGYG 234


>gi|209878979|ref|XP_002140930.1| DNA-repair protein UVH3 [Cryptosporidium muris RN66]
 gi|209556536|gb|EEA06581.1| DNA-repair protein UVH3, putative [Cryptosporidium muris RN66]
          Length = 1017

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 18/127 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           VR+  QAFGIP I+  G EA+   +  T +    G    ++S D D   ++    C+Y  
Sbjct: 748 VRMLLQAFGIPWIDSPG-EAEAQASILTQL----GLCDGVLSDDSDC--ILFGAKCVYRN 800

Query: 158 V-------KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
                   K  K+DIE+ +   GI     +C+ AL     D   G+ G+G   A  +L+ 
Sbjct: 801 FFCGTTVEKYVKVDIENFL---GIKNHDQMCILALLL-GCDYTVGVSGVGPVNALEILKA 856

Query: 211 YGNLENI 217
           Y NL ++
Sbjct: 857 YPNLSDM 863


>gi|32442309|gb|AAP82225.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 156/378 (41%), Gaps = 76/378 (20%)

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++ I+++ V L+L+ LL+ ++   +    Y +L+  M  +++Q E +G + D D   +V 
Sbjct: 66  DYCIQDTQVTLRLYELLQRRM---ETYADYIKLEMDMAMLMAQQEASGFRFDMDAAVRVR 122

Query: 600 AEISKNLLSLEENIYDL----SGEKFNLS--------------------SPKQLGDILFT 635
           A +     S+ ++I  +     G+ F                       +P    +I + 
Sbjct: 123 ATLQDEFDSITKSIAAIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQNIAWA 182

Query: 636 KLKFPSGAK----TKTGQWKTTAQDLEQI-----NCGDNPI---------IKNILEW-RQ 676
              F  GA+    T+TG+ K     L ++     + G+  +         +  + +W  Q
Sbjct: 183 LQTF-RGARFTKVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQKWLGQ 241

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI 733
           LS+  +++ +S+          +H   +L ST TGR A   PNL  +   P   +L    
Sbjct: 242 LSEGTNSWFNSIEGDGC-----IHHSCTL-STQTGRNAHRGPNLGQVVSAPWAREL---- 291

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
              F+  P   ++ AD   +ELR+L H          F+       +V  +I   N ++V
Sbjct: 292 ---FVPHPGHVMVGADLEGLELRLLGHY------LAAFDQGSFAEVVVNGDIHQQNADRV 342

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA------ADYIKRYFHRFPGIHEYIE 847
               R   KT+ ++ IYG    +L   L+   S+A       +  +++    PG+   ++
Sbjct: 343 GC-TRTQVKTLTYAFIYGAGDVKLGHSLQPELSDAQKKTLGGELRRKFLDAIPGLEPLVD 401

Query: 848 KTKNFVRQNGYVETIFGR 865
             K  VR  G ++ + GR
Sbjct: 402 AVKLKVRSTGRLKGLDGR 419


>gi|118596592|dbj|BAF37955.1| putative flap endonuclease-1 [Sulfolobus sp. NO82]
          Length = 304

 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+++ ++KK G+  E+++ +  + G    N  GI G G KTA  +++
Sbjct: 152 PGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDY-NPDGIKGYGVKTAYRIIK 210

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           +YG+LE   I    I + K   N+ E        R L +   +  +  P E+L L DC+ 
Sbjct: 211 KYGSLEKA-IEKGEIPKIKVNFNVEEI-------RSLFL---NPQVVEPKENLELADCDD 259

Query: 270 PRLISFL 276
            +++  L
Sbjct: 260 NKILDIL 266


>gi|32442307|gb|AAP82224.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 155/377 (41%), Gaps = 76/377 (20%)

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++ I+++ V L+L+ LL+ ++   +    Y +L+  M  +++Q E +G + D D   +V 
Sbjct: 66  DYCIQDTQVTLRLYELLQRRM---ETYADYIKLEMDMAMLMAQQEASGFRFDMDAAVRVR 122

Query: 600 AEISKNLLSLEENIYDL----SGEKFNLS--------------------SPKQLGDILFT 635
           A++     S+ E I  +     G+ F                       +P    +I + 
Sbjct: 123 AQLQDEFDSITEAIAKIYLYVPGKVFTPKRADKKRGYVAGAPMTRLTDFNPTSRQNIAWA 182

Query: 636 KLKFPSGAK----TKTGQWKTTAQDLEQI-----NCGDNPI---------IKNILEW-RQ 676
              F  GA+    T+TG+ K     L ++     + G+  +         +  + +W  Q
Sbjct: 183 LQTF-RGARFTKITETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQKWLGQ 241

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI 733
           LS+  +++ +S+          +H   +L ST TGR A   PNL  +   P   +L    
Sbjct: 242 LSEGTNSWFNSIEGDGC-----IHHSCTL-STQTGRNAHRGPNLGQVVSAPWAREL---- 291

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
              F+  P   ++ AD   +ELR+L H          F+       +V  +I   N ++V
Sbjct: 292 ---FVPHPGHIMVGADLEGLELRLLGHY------LAAFDEGSFAEVVVNGDIHQQNADRV 342

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA------ADYIKRYFHRFPGIHEYIE 847
               R   KT+ ++ IYG    +L   L+   S+A       +  +++    PG+   ++
Sbjct: 343 GC-TRTQVKTLTYAFIYGAGDVKLGHSLQPELSDAQKKTLGGELRRKFLDAIPGLEPLVD 401

Query: 848 KTKNFVRQNGYVETIFG 864
             K  VR  G ++ + G
Sbjct: 402 AVKLKVRSTGRLKGLDG 418


>gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase
 gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2]
 gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2]
          Length = 648

 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 98/252 (38%), Gaps = 54/252 (21%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L Q +R AFI     +   +D+S IE R++A +A      +VF     I+   AA++F V
Sbjct: 366 LSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKIYEASAAQMFKV 425

Query: 789 NIE---KVSPQMRRHAKTINFSIIY---------------GISPFRLATQLRIPRSEAAD 830
            +E   K SP +R+  K    ++ Y               G++   L   ++  R+    
Sbjct: 426 PVESITKGSP-LRQKGKVAELALGYQGGKGALIQMGALNMGLAEGELPELVKAWRTANKK 484

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNG----------YVETIFGRRIHY-------DE-- 871
            +K ++       + +++ K    Q+G          +V+   GRR+ Y       DE  
Sbjct: 485 IVKFWYDVEAAAIKAVKERKPVKLQHGLTFLYESGILFVQLPSGRRLAYAKPKLELDERF 544

Query: 872 ----------INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
                     + S K    N      +   +Q +A D     ++ +  +        K +
Sbjct: 545 GKEALTYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNA------GYKTV 598

Query: 922 LQIHDELVFEVP 933
           + +HDE V +VP
Sbjct: 599 MHVHDEAVLDVP 610


>gi|290997255|ref|XP_002681197.1| predicted protein [Naegleria gruberi]
 gi|317374913|sp|D2V434|FEN1_NAEGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|284094820|gb|EFC48453.1| predicted protein [Naegleria gruberi]
          Length = 387

 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 17/130 (13%)

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
           L+RL     G+P +E  G EA+   A       K G      + D D +   +P    + 
Sbjct: 144 LLRL----MGVPVVEAPG-EAEAQCAELC----KGGLVYATATEDMDALTYATPVLARHL 194

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E      ++   + VI+  G+  ++ + +  L G   D    I GIG K A  ++++
Sbjct: 195 TFSEARKQPIQEFTFKQVIEGLGVTVDQFIDICILCG--CDYTDSIKGIGPKKALAMIKK 252

Query: 211 YGNLENILIN 220
           YGN+EN+L N
Sbjct: 253 YGNIENLLKN 262


>gi|254580281|ref|XP_002496126.1| ZYRO0C11110p [Zygosaccharomyces rouxii]
 gi|238939017|emb|CAR27193.1| ZYRO0C11110p [Zygosaccharomyces rouxii]
          Length = 610

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 21/133 (15%)

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVSPTTCLYD 156
            +A  IP + +  FEAD   A   Y+ EK GF   I+S D DL+     +L++      +
Sbjct: 137 CKAQNIPYV-VAPFEAD---AQMVYL-EKNGFIQGILSEDSDLLIFGCRRLITKLNDFGE 191

Query: 157 TVKEEKIDIEHVIKKWGI----PPE--KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
            ++  + D   +  K+ +    P E   MVCL        D   GIP +G  TA  L+Q 
Sbjct: 192 CIEICRDDFCKLPYKFALNKLTPQEIRTMVCLAG-----CDYTSGIPKVGLVTAMKLVQR 246

Query: 211 YGNLENILINASR 223
           +  LE IL++  R
Sbjct: 247 FRTLERILLHVQR 259


>gi|84662631|ref|YP_453596.1| putative DNA polymerase I [Xanthomonas phage OP1]
 gi|84570680|dbj|BAE72743.1| putative DNA polymerase I [Xanthomonas oryzae phage OP1]
          Length = 309

 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 12/142 (8%)

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT-----VKEEKIDIEHVIK 170
           EADD IA  T  A   G    ++S DKD  ++ +    ++ T     VK    D     K
Sbjct: 139 EADDGIAYCTEAAYTLGRPGAVMSADKDF-RMFAGVHVVWRTLQVVEVKPGTYDQMFAGK 197

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           ++G    K   LQ + GD  DNI G+PG G   A   L +  + ++ +     + +K+ R
Sbjct: 198 QYG---HKFFWLQMIMGDQADNIVGLPGCGEVAAEKTLHDTTSNQDAMTAVVALYKKRMR 254

Query: 231 ENILEYAETARLSRKLVMLRTD 252
           E    +A+       L+ +RTD
Sbjct: 255 E---LWAQHFVEQASLLWMRTD 273


>gi|270610572|ref|ZP_06221670.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270318079|gb|EFA29335.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 164

 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 37/186 (19%)

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           KK  E +L     A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N
Sbjct: 5   KKLGEKLLAEKNNADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFSRYEFKRWLN 64

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
            V    D      E  V                       K +Q+ + S   S +  E T
Sbjct: 65  EVMNGADSITQTTEQPV-----------------------KMNQYQASSQDQSAV--ENT 99

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P+              I+   Y  ++   D+ +W++KL      +    TD++D   +  
Sbjct: 100 PK------------IQIDRTKYETLLTQADLTRWIEKLNAAKLIAVDTETDSLDYMSANL 147

Query: 407 IAIAIS 412
           + I+ +
Sbjct: 148 VGISFA 153


>gi|304654266|gb|EFM47658.1| PsRxL467 [Phytophthora sojae]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L   K F E+  +LK+ HN  +D+ VL+ +GI+++G   D M M+ + ++ R  H   S+
Sbjct: 141 LQLFKDFLESREYLKVWHNYSFDRHVLYNHGINVQGLGGDTMHMARLWNTARFQHGGYSL 200


>gi|115658831|ref|XP_001188956.1| PREDICTED: similar to DNA polymerase N, partial [Strongylocentrotus
           purpuratus]
 gi|115686030|ref|XP_797000.2| PREDICTED: similar to DNA polymerase N, partial [Strongylocentrotus
           purpuratus]
          Length = 48

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 895 SAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEI 937
           SAADI + AMI + K L E + +  ++L+QIHDEL+FEV +E+I
Sbjct: 1   SAADICKLAMIHIMKVLSEKNTVRARLLVQIHDELLFEVHDEDI 44


>gi|125999984|ref|YP_001039655.1| 5'-3' exonuclease-like protein [Erwinia amylovora phage Era103]
 gi|121621840|gb|ABM63414.1| 5'-3' exonuclease-like protein [Enterobacteria phage Era103]
          Length = 379

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 60/152 (39%), Gaps = 39/152 (25%)

Query: 80  YKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY-----IAEKEGFA 134
           YK  RP        +L    L TQ      I   G EADD I+   +       E+EG  
Sbjct: 120 YKGTRPASKPAFFQELRRYLLETQ----DTILAVGEEADDRISIEAWRMAREFCEEEGIE 175

Query: 135 V-----------TIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE------ 177
           V            +IS DKDLMQ+  P   L+   K   +++E V K   + P+      
Sbjct: 176 VGSEEHKAFADYVVISKDKDLMQV--PGWHLH--YKNNAMELEWVTKFGYLRPKYKGDGK 231

Query: 178 ---------KMVCLQALTGDSIDNIPGIPGIG 200
                    K +  Q L GD +DN  G+PG G
Sbjct: 232 MKKLEGAGLKFLYAQMLMGDDVDNYKGLPGCG 263


>gi|311875225|emb|CBX44484.1| 5\'-3\' exonuclease-like protein [Erwinia phage phiEa1H]
 gi|311875346|emb|CBX45087.1| 5'-3'-exonuclease [Erwinia phage phiEa100]
          Length = 379

 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 60/152 (39%), Gaps = 39/152 (25%)

Query: 80  YKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY-----IAEKEGFA 134
           YK  RP        +L    L TQ      I   G EADD I+   +       E+EG  
Sbjct: 120 YKGTRPASKPAFFQELRRYLLETQ----DTILAVGEEADDRISIEAWRMAREFCEEEGIE 175

Query: 135 V-----------TIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE------ 177
           V            +IS DKDLMQ+  P   L+   K   +++E V K   + P+      
Sbjct: 176 VGSEEHKAFADYVVISKDKDLMQV--PGWHLH--YKNNAMELEWVTKFGYLRPKYKGDGK 231

Query: 178 ---------KMVCLQALTGDSIDNIPGIPGIG 200
                    K +  Q L GD +DN  G+PG G
Sbjct: 232 MKKLEGAGLKFLYAQMLMGDDVDNYKGLPGCG 263


>gi|45188230|ref|NP_984453.1| ADR357Cp [Ashbya gossypii ATCC 10895]
 gi|44983074|gb|AAS52277.1| ADR357Cp [Ashbya gossypii ATCC 10895]
          Length = 1131

 Score = 42.7 bits (99), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 91/243 (37%), Gaps = 48/243 (19%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAK--------ITPLYQVFENS----LD 776
           +G +++   ++P     + AD    EL I + I              Y   E +     D
Sbjct: 661 IGSELKTKIVAPEGYSFVGADVDSEELWIASLIGDSVFNIHGGTAIGYMCLEGTKDAGTD 720

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAAD 830
           +H   A+ I G +        R  AK  N+  IYG    R A QL       +   +   
Sbjct: 721 MHTKTAS-ILGCS--------RNEAKIFNYGRIYGAG-VRFAAQLLKQFNPTLSEEQTRA 770

Query: 831 YIKRYFHRFPG--IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI--------- 879
             +R +    G   H  I K   F    G    +F +  H  E + P++ +         
Sbjct: 771 TAERLYEATKGKTYHSKIFKKFWF---GGSESILFNKLEHIAEQDQPRTPVLGAGITVSL 827

Query: 880 --RNINER----AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
             RN+ +     + IN  IQ S  D       S+H  +E ++L  ++ + IHDEL + V 
Sbjct: 828 LKRNLGKDTFLPSRINWAIQSSGVDYLHLLFCSMHYLIEKYRLRARVCISIHDELRYLVA 887

Query: 934 EEE 936
            E+
Sbjct: 888 NED 890


>gi|28380019|sp|Q976H6|FEN_SULTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 351

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+++ ++KK G+  E+++ +  + G    N  GI G G KTA  +++
Sbjct: 199 PGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDY-NPDGIKGYGVKTAYRIIK 257

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           +YG+LE   I    I + K   N+ E         + + L+  V    P E+L L DC+ 
Sbjct: 258 KYGSLEKA-IEKGEIPKIKVNFNVEEI--------RSLFLKPQV--VEPKENLELVDCDS 306

Query: 270 PRLISFL 276
            +++  L
Sbjct: 307 NKILDIL 313


>gi|238801845|ref|YP_002922895.1| putative exodeoxyribonuclease [Enterobacteria phage WV8]
 gi|216263058|gb|ACJ71926.1| putative exodeoxyribonuclease [Enterobacteria phage WV8]
          Length = 348

 Score = 42.4 bits (98), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 22/104 (21%)

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVI 169
           GFEAD I+      AEK G    ++S DKDL Q    T C+ D   E+     I   +V 
Sbjct: 168 GFEADSIVIA---KAEKMGKKAALMSIDKDLRQ-AEGTYCI-DMTYEKSPLIFIADNNVG 222

Query: 170 KKWGIP----PE---------KMVCLQALTGDSIDNIPGIPGIG 200
             W  P    P+         K +C QA+ GD+ DN  G+ G G
Sbjct: 223 DIWDCPIKSKPKAAKTVGVGFKFLCYQAVAGDNADNYFGLKGAG 266


>gi|47934608|gb|AAT39742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 42.4 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGI---DRPEAKAVAHYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVVTNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LAH
Sbjct: 171 DEGNVLVGIDASGLELRMLAH 191


>gi|262342183|gb|ACY54602.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 39/220 (17%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSL- 775
           PNL  +P   +      R+   P    L + +D S +ELR L H        +  E  + 
Sbjct: 1   PNLAQVPSAHEY-----RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVN 55

Query: 776 -DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA----- 829
            DIH  +A EI+G +        R+  K + + +IYG    +L       +S A+     
Sbjct: 56  GDIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQE 106

Query: 830 --DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
               I +    F  ++  I++      ++G ++ + GR I     N           RAA
Sbjct: 107 IRGKIMQGLSSFADLNAAIQERA----KSGVLKGLDGRPIRLQGKN-----------RAA 151

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +N  +Q + A I +  +I  H+ L++  +    L  IHDE
Sbjct: 152 LNYLLQSAGAIICKLWVIRTHELLQEAGIDYYPLAFIHDE 191


>gi|269975301|gb|ACZ55525.1| putative exodeoxyribonuclease [Staphylococcus phage SA1]
          Length = 346

 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 22/104 (21%)

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVI 169
           GFEAD I+      AEK G    ++S DKDL Q    T C+ D   E+     I   +V 
Sbjct: 168 GFEADSIVIA---KAEKMGKKAALMSIDKDLRQ-AEGTYCI-DMTYEKSPLIFIADNNVG 222

Query: 170 KKWGIP----PE---------KMVCLQALTGDSIDNIPGIPGIG 200
             W  P    P+         K +C QA+ GD+ DN  G+ G G
Sbjct: 223 DIWDCPIKSKPKAAKTVGVGFKFLCYQAVAGDNADNYFGLKGAG 266


>gi|148807575|gb|ABR13588.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 173

 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 18/165 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    +T
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFK--LQT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISAD 749
              +TGR+    PNL  +P +    G++ R  +  P   KLI  D
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCD 169


>gi|302306477|ref|NP_982895.2| ABL052Cp [Ashbya gossypii ATCC 10895]
 gi|317374930|sp|Q75DS8|FEN1_ASHGO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|299788534|gb|AAS50719.2| ABL052Cp [Ashbya gossypii ATCC 10895]
          Length = 378

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 13/120 (10%)

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-- 162
            GIP ++  G EA+   A       K+G      S D D +   +P    + T  E +  
Sbjct: 146 MGIPYVDAPG-EAEAQCAELA----KKGKVFAAASEDMDTLCYRTPYLLRHLTFSEARKE 200

Query: 163 ----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
               ID E V++  G+  E++V L  + G   D    I G+G  TA  L++E+G+LENI+
Sbjct: 201 PIHEIDTELVLQGLGLSQEQLVDLGIMLG--CDYCESIKGVGPVTALKLIKEHGSLENIV 258


>gi|15920393|ref|NP_376062.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
 gi|15621175|dbj|BAB65171.1| 304aa long hypothetical flap endonuclease [Sulfolobus tokodaii str.
           7]
          Length = 304

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+++ ++KK G+  E+++ +  + G    N  GI G G KTA  +++
Sbjct: 152 PGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDY-NPDGIKGYGVKTAYRIIK 210

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           +YG+LE   I    I + K   N+ E         + + L+  V    P E+L L DC+ 
Sbjct: 211 KYGSLEKA-IEKGEIPKIKVNFNVEEI--------RSLFLKPQV--VEPKENLELVDCDS 259

Query: 270 PRLISFL 276
            +++  L
Sbjct: 260 NKILDIL 266


>gi|302789073|ref|XP_002976305.1| hypothetical protein SELMODRAFT_416415 [Selaginella moellendorffii]
 gi|300155935|gb|EFJ22565.1| hypothetical protein SELMODRAFT_416415 [Selaginella moellendorffii]
          Length = 300

 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 45  LWKLLQNSRKESIASHFAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           LW +    R+  +A     +FD      +R +I P YKA R K  + L P     R    
Sbjct: 137 LWWMRAFLRRIVLADPVIAVFDGEFGNDYRRKILPSYKAGRRKF-KPLDPSFKWTRGLEA 195

Query: 104 AFG----------IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           +F           IP +++   EADD++ T             I S DKD  QL
Sbjct: 196 SFSRFQRFLRQCNIPVVKVDNAEADDVVTTLARQVTDRSLKAVIASPDKDFKQL 249


>gi|118596582|dbj|BAF37950.1| putative flap endonuclease-1 [Sulfolobus sp. Tu A]
 gi|118596584|dbj|BAF37951.1| putative flap endonuclease-1 [Sulfolobus sp. Tu B-1]
 gi|118596586|dbj|BAF37952.1| putative flap endonuclease-1 [Sulfolobus sp. Sko-3]
 gi|118596588|dbj|BAF37953.1| putative flap endonuclease-1 [Sulfolobus sp. Ta]
          Length = 304

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+++ ++KK G+  E+++ +  + G    N  GI G G KTA  +++
Sbjct: 152 PGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDY-NPDGIKGYGVKTAYRIIK 210

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           +YG+LE   I    I + K   N+ E         + + L+  V    P E+L L DC+ 
Sbjct: 211 KYGSLEKA-IEKGEIPKIKVNFNVEEI--------RSLFLKPQV--VEPKENLELVDCDS 259

Query: 270 PRLISFL 276
            +++  L
Sbjct: 260 NKILDIL 266


>gi|209878504|ref|XP_002140693.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209556299|gb|EEA06344.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 496

 Score = 42.0 bits (97), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 20/125 (16%)

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
           GI  I +  +EAD   A  +Y+  + G+   +I+ D D++   SP T +Y    ++K  I
Sbjct: 145 GIECI-VAPYEAD---AQLSYLC-RTGYVDAVITEDSDMLVFGSPCT-IYK--HDDKTGI 196

Query: 166 EHVIKKWGIPPEKMVCLQ----------ALTGDSIDNIPGIPGIGYKTAALLLQE-YGNL 214
             VI  WG  P   +  Q            T    D +    G+G KTA  L+QE YG+L
Sbjct: 197 CRVIY-WGDLPRSGILRQNIFTYEMFVLGCTLTGCDYVKSPQGVGIKTAMKLVQEYYGDL 255

Query: 215 ENILI 219
           E I++
Sbjct: 256 ERIIL 260


>gi|325849905|ref|ZP_08170944.1| conserved domain protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325479929|gb|EGC83012.1| conserved domain protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 83

 Score = 42.0 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 7  LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
          + L+DGSS I+RAF+A P L+   DG+  N + GF  M ++ ++  + + I   F
Sbjct: 5  VMLIDGSSLIFRAFFALPNLTNA-DGVMTNGVYGFLTMYFRAVEEYKPDYILVAF 58


>gi|254500991|ref|ZP_05113142.1| hypothetical protein SADFL11_1027 [Labrenzia alexandrii DFL-11]
 gi|254505305|ref|ZP_05117453.1| hypothetical protein SADFL11_PLAS3 [Labrenzia alexandrii DFL-11]
 gi|222436149|gb|EEE42831.1| hypothetical protein SADFL11_PLAS3 [Labrenzia alexandrii DFL-11]
 gi|222437062|gb|EEE43741.1| hypothetical protein SADFL11_1027 [Labrenzia alexandrii DFL-11]
          Length = 272

 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 80/198 (40%), Gaps = 38/198 (19%)

Query: 72  FRNEIYPDYKANR-PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           FR  + P YKANR  + PE  L  +  +    +    P +E     ADDII       ++
Sbjct: 69  FRKTLLPTYKANRTGEKPEAYLAAVNALEDEYEVLRQPKLE-----ADDIIGIMMGSPKR 123

Query: 131 EGFAVTIISTDKDLMQ----LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
               VTI   DKDL      L +PT       K  KI+  +         ++    Q + 
Sbjct: 124 TFVGVTI---DKDLHSCPGYLFNPTK----DKKPRKINTRYA--------DEFHLKQTMC 168

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR-------------ENI 233
           GD++D   GIPG+G   A  +L     L       SR K K +              E++
Sbjct: 169 GDTVDGYTGIPGVGPAKAQEILANPHRLLKETKTISRGKNKGKSKTNWVKGGPCSVWESM 228

Query: 234 LEYAETARLSRKLVMLRT 251
           ++YA  + +S   + L++
Sbjct: 229 VDYANKSGMSEADLSLQS 246


>gi|148807520|gb|ABR13563.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 18/164 (10%)

Query: 595 LKQVSAEISKNLLSL-EENIYDLSGEK-------FNLSSPKQLGDIL-FTKLKFPSGAKT 645
           ++Q++ ++ K    + EE   + +G++       FN+ S KQ+ + L    +KF    KT
Sbjct: 13  MRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKQ--KT 70

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           + G      + LE I   D P  K I E+  L K ++   DS   H  ++  RVH     
Sbjct: 71  EKGAIIVNEKVLEGI---DIPEAKLIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVIT 124

Query: 706 ASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISA 748
              +TGR+    PNL  +P +    G++ R  +  P   KLI  
Sbjct: 125 NGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGC 168


>gi|47934712|gb|AAT39794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 7/141 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      + LE I   D P  K +  +  L K 
Sbjct: 57  FNPGSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGI---DRPEAKAVARYMMLQK- 111

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+    PN+  +P +    G + R  +  
Sbjct: 112 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTV 170

Query: 740 PPTKKLISADYSQIELRILAH 760
                L+  D S +ELR+LA 
Sbjct: 171 DEGNVLVGIDASGLELRMLAR 191


>gi|302842273|ref|XP_002952680.1| hypothetical protein VOLCADRAFT_93304 [Volvox carteri f.
           nagariensis]
 gi|300262024|gb|EFJ46233.1| hypothetical protein VOLCADRAFT_93304 [Volvox carteri f.
           nagariensis]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           V +IS D D++QL++   C +   ++++  +        +PP       AL G +   +P
Sbjct: 202 VVVISADSDMLQLLAYPGCCWLEQQQQQATL--------LPPAAYPDFLALVGKAEAGVP 253

Query: 195 GIPGIGYKTAALLLQEYGNLENIL 218
           G+ G+G + +  LL  YG++  I+
Sbjct: 254 GV-GLGSRASKKLLARYGSISGII 276


>gi|288931681|ref|YP_003435741.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
           10642]
 gi|288893929|gb|ADC65466.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
           10642]
          Length = 336

 Score = 41.6 bits (96), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E ID+E  +KK GI  E+++ +  L G   D   G+ GIG K A   ++
Sbjct: 195 PGKNVYVEIKPEIIDLEANLKKLGITREQLIDVAILVG--TDYNEGVKGIGAKKALKYVK 252

Query: 210 EYGNLENIL 218
            YG+++ +L
Sbjct: 253 TYGDVKKVL 261


>gi|47934610|gb|AAT39743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTD-LGQKIRRAFISPPTKKLISADYSQIEL 755
            RVH        +TGR+    PN+  +P  +   G + R  +     K L+ AD S +EL
Sbjct: 21  HRVHGKVITNGAVTGRMTHHSPNMAQVPSSSSPWGHECRDCWTVDEGKILVGADASSLEL 80

Query: 756 RILAHIAK 763
           R+LAH  K
Sbjct: 81  RMLAHYMK 88


>gi|257077017|ref|ZP_05571378.1| flap endonuclease-1 [Ferroplasma acidarmanus fer1]
          Length = 339

 Score = 41.6 bits (96), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 18/112 (16%)

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS---------------PTTCLYDTVKEEKIDIE 166
           A  +Y++ K G   ++IS D D + L +                 T  +  +  E ID++
Sbjct: 155 AQASYMS-KVGAVDSVISQDYDCLLLGARRVLRNFTMYGRRRISGTGKFINITPEIIDLK 213

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             +   GI  ++++ +  L G   +  PGI GIG KT   L+++YG++E++L
Sbjct: 214 ENLDNLGITQDQLIGIGILVGTDFN--PGIRGIGAKTGLSLIKKYGDIESVL 263


>gi|148747813|ref|YP_001285779.1| DNA polymerase [Phormidium phage Pf-WMP3]
 gi|146230046|gb|ABQ12454.1| DNA polymerase [Phormidium phage Pf-WMP3]
          Length = 220

 Score = 41.6 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 23/218 (10%)

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR---- 822
           L +VF +  D+H+  A +I+G++        R+ AK + F   +G    ++A        
Sbjct: 14  LSKVFVDGEDVHQFFA-DIYGID--------RKIAKNVTFGYAFGAGATKMAATASRGGS 64

Query: 823 -IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV-ETIFGRRIHYDEINSPKSSIR 880
            +P S     +     R P +           R NG V   + G+R    E+ S   S R
Sbjct: 65  VVPVSTIKGALSSLQDRLPALPALKTLVVEHARDNGGVFHDLLGQRYVVPELLSKNKSER 124

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF---EVPEEEI 937
              ER A N  +QG  A   R   +         +   K+   +HDE+ +    V  EE 
Sbjct: 125 AAGERRAFNYWVQGFEATAFRYLQLKARPV--QFEYGAKLAFVVHDEVGYLCQSVVAEEF 182

Query: 938 TTASQIIVHSMEKACLPK-INLRVPLKVNIKVSNNWQE 974
             A Q+      +   P  +   + L+   +V   W E
Sbjct: 183 --AKQMTSIYTTREVFPSDMTSGLTLEAEFQVGQTWLE 218


>gi|32128449|ref|NP_858984.1| 5'-exonuclease similar to N-terminal domains of DNA polymerase I
           [Xanthomonas phage Xp10]
 gi|31788512|gb|AAP58704.1| 36L [Xanthomonas phage Xp10]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 67/164 (40%), Gaps = 29/164 (17%)

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDL------------MQLVSPTTCLYDTVKEEKI 163
           EADD IA  T  A K G    ++S DKD             +Q+V  T   YD +     
Sbjct: 139 EADDGIAYCTEAAYKLGRPGAVMSADKDFRMFAGVHVVWRTLQVVEITPGTYDQM----- 193

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ-EYGNLENILINAS 222
                 K++G    K   LQ + GD  DNI G+PG G   A   L     N + +    +
Sbjct: 194 ---FAGKQYG---HKFFWLQMIMGDQADNIVGLPGCGEVAAEKTLNGTSSNQDAMAAVVA 247

Query: 223 RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
             KQ+ +      + E A     L+ +RTD  +  P + L + D
Sbjct: 248 LYKQRMKELWAPHFVEQA----SLLWMRTD-SVASPTDFLKIAD 286


>gi|260939924|ref|XP_002614262.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
 gi|238852156|gb|EEQ41620.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
          Length = 930

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 35/184 (19%)

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAA 829
           D+H   A +I G++        R  AK  N+  IYG    + AT+L       +  +EA 
Sbjct: 424 DLHSKTA-DIMGIS--------RNDAKVFNYGRIYGAG-VKFATRLLKQCNANLSDAEAE 473

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG--RRIHYDEINSPKSSI-------- 879
              K  + +  G+  + +  K  V   G    +F     I Y E   P++ +        
Sbjct: 474 RLAKELYEKTKGLASHSKIFKRRVYHGGSESVMFNALEAIAYQE--HPRTPVLGASITDA 531

Query: 880 -------RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
                  +N    + IN  IQ S  D     ++S+   +E  KL  ++++ +HDE+ + V
Sbjct: 532 LTQKYLNKNNYLTSRINWTIQSSGVDYLHLLIVSMDYLIEKFKLDARLMITVHDEVRYMV 591

Query: 933 PEEE 936
            EE+
Sbjct: 592 KEEQ 595


>gi|331035472|gb|AEC53029.1| RNaseH ribonuclease [Synechococcus phage S-CRM01]
          Length = 280

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 72  FRNEIYPDYKANRPKIPE-------MLLPQLPLVRLATQA-FGIPAIEIQGFEADDIIAT 123
           +R E++P YK NR +  E        +   L  +R   +  F    I+ QG EADDIIAT
Sbjct: 61  WRKEVFPLYKKNRKQEREESNIDWDHVFSVLNKIRDEIRINFPYKVIQAQGAEADDIIAT 120

Query: 124 YTYIAEKEGFA--VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
                        V I+S DKD +QL       YD VK+     + +  +W      +  
Sbjct: 121 LCMHNSHREIPDRVLILSADKDFIQLHK-----YDFVKQ----YDPIRNRWIKEEYPIFY 171

Query: 182 LQA--LTGDSIDNIPGI 196
           LQ   + GD  D IP I
Sbjct: 172 LQEHIIRGDRSDGIPNI 188


>gi|58532997|ref|YP_195220.1| rnh RNaseH [Synechococcus phage S-PM2]
 gi|58331464|emb|CAF34250.1| rnh RNaseH [Synechococcus phage S-PM2]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 22/136 (16%)

Query: 72  FRNEIYPDYKANRPKIPEM-------LLPQLPLVRLATQA-FGIPAIEIQGFEADDIIAT 123
           +R +I+P YK NR K  E        +   L  +R   +  F    +E+ G EADD+I+T
Sbjct: 60  WRKDIFPYYKQNRKKDRERSGHNWSSIFEVLNKIRDEIRDLFPYKVVEVLGAEADDVIST 119

Query: 124 YTYIAEKEGFA--VTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
              + + +G    + I+S DKD +QL   P    Y+ + ++++  ++        P   +
Sbjct: 120 ---LCKNKGPKELILILSGDKDFIQLHKYPGVYQYNPITKKQLGYDN--------PHAFI 168

Query: 181 CLQALTGDSIDNIPGI 196
               L GD  D IP  
Sbjct: 169 KEHILKGDKSDGIPNF 184


>gi|61806419|ref|YP_214196.1| T7-like exonuclease [Prochlorococcus phage P-SSP7]
 gi|61374344|gb|AAX44198.1| T7-like exonuclease [Prochlorococcus phage P-SSP7]
 gi|265525456|gb|ACY76222.1| predicted protein [Prochlorococcus phage P-SSP7]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 27/177 (15%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           FR +I P+YK +R +       ++  ++   + + +  I     EADD +  Y   A K 
Sbjct: 69  FRKKILPEYKGHRNRKKPCGYKRV--IQELKKNYKV--ILRDTLEADDAMGIY---ATKH 121

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE--KMVCLQALTGDS 189
              V I+S DKD+ Q+      LYD    E +DI         P E  +   +Q + GD+
Sbjct: 122 TGNV-IVSPDKDMRQIAGK---LYDF--NETVDI--------TPDEGARWHLIQTMAGDN 167

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
            D   G+PGIG K A  + +  G     ++     K     + ++     ARL+R L
Sbjct: 168 TDGYSGVPGIGVKRAEQIFKLKGYTWKAVVETFEEKGMTEEDALM----NARLARIL 220


>gi|262212299|gb|ACY35766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.96,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 39/220 (17%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSL- 775
           PNL  +P   +      R+   P    L + +D S +ELR L H        +  E  + 
Sbjct: 1   PNLAQVPSAHEY-----RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVN 55

Query: 776 -DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA----- 829
            DIH  +A EI+G +        R+  K + + +IYG    +L       +S A+     
Sbjct: 56  GDIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQE 106

Query: 830 --DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
               I R    F  ++  I++      ++G ++ + GR I     N            AA
Sbjct: 107 IRGKIMRGLSGFADLNAAIQERA----KSGVLKGLDGRPIRLQGKN-----------HAA 151

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +N  +Q + A I +  +I  H+ L++  +    L  IHDE
Sbjct: 152 LNYLLQSAGAIICKLWVIRTHELLQEAGIDYYPLAFIHDE 191


>gi|115608313|ref|XP_001179661.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
            purpuratus]
 gi|115610072|ref|XP_788319.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
            purpuratus]
          Length = 2412

 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query: 560  LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
            L+   LL ++ +++ P I  ++++E+ GI ID    +   A +   L  LEE  Y ++G 
Sbjct: 2341 LLEGPLLFLFPQVEMPSIVTLARVELNGIGIDGAECETQKAVMQAKLKCLEEEAYKIAGH 2400

Query: 620  KFNLSSP 626
             F+L+SP
Sbjct: 2401 GFSLTSP 2407


>gi|52549222|gb|AAU83071.1| DNA repair protein [uncultured archaeon GZfos26E7]
          Length = 339

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  VK E I+++  + + GI  E+++ +  L G   D  PGI GIG K A  L+ 
Sbjct: 197 PGKNVYVDVKLEIIELQPNLDRLGITQEQLIDIAILVGTDYD--PGIHGIGAKKALQLIY 254

Query: 210 EYGNLENIL 218
           ++G++E+ L
Sbjct: 255 KHGSIEDAL 263


>gi|47934632|gb|AAT39754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 79

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAFISPPTKKLISADY 750
           + + T R+H   +    +TGR+    PNL  +P   +  G+  R  F       L+  D 
Sbjct: 2   LRRGTGRIHGKVNTCGAVTGRMTHSSPNLAQVPASHSPYGEDCRELFTVEDGYCLVGMDA 61

Query: 751 SQIELRILAH 760
           S +ELR+LAH
Sbjct: 62  SGLELRMLAH 71


>gi|292656986|ref|YP_003536883.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
 gi|291370541|gb|ADE02768.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
          Length = 326

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 12/114 (10%)

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--EKIDIEHVIKKWGIPPEKM 179
           A  +Y+A K G A  + S D D +   +P T    T K   E +D++  + K  I  E++
Sbjct: 157 AQASYMARK-GDADYVGSEDYDTLLFGAPYTLRQLTSKGNPELMDLDATLDKHDITYEQL 215

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-------INASRIKQ 226
           V +  L G   +   GI GIG KTA  ++ E+G+L ++L        NA R+++
Sbjct: 216 VDIAMLCGTDFNE--GITGIGPKTAVKVVTEHGDLWSVLEARGASIPNADRVRE 267


>gi|294657671|ref|XP_459977.2| DEHA2E15444p [Debaryomyces hansenii CBS767]
 gi|199432866|emb|CAG88226.2| DEHA2E15444p [Debaryomyces hansenii]
          Length = 678

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 23/163 (14%)

Query: 129 EKEGFAVTIISTDKDLMQLVSPT--TCLYDTVKEEKIDIEHVIKKWGIP------PEKMV 180
           E+ G    I+S D DL+     T  T L D  +  +I  ++      IP       E++ 
Sbjct: 159 ERIGLVDGILSEDSDLLIFGCNTLITKLNDYGECIEICRDNFCNVKKIPFLSNYTQEQLR 218

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L+G   D   GIPGIG KTA  L++ + NLE +LI A R   KK   +  +    A
Sbjct: 219 LVAMLSG--CDYTKGIPGIGLKTAFNLVKRFNNLEKVLI-ALRSDGKKPPVDFEDEVYKA 275

Query: 241 RLS-----------RKLVMLRTDVPITIPLEHLILEDCNGPRL 272
            L+           +KL  L +  P+ + L+  ILE C G  L
Sbjct: 276 NLAFQFQKVFSPLTKKLETLNS-YPVDLKLDFEILEACCGKTL 317


>gi|255714619|ref|XP_002553591.1| KLTH0E02398p [Lachancea thermotolerans]
 gi|238934973|emb|CAR23154.1| KLTH0E02398p [Lachancea thermotolerans]
          Length = 665

 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 14/117 (11%)

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVSPTTCLYDTVKEEKIDIEHVI 169
           FEAD   A   Y+ EK+G    IIS D DL+     +L++  T   + ++  + D   + 
Sbjct: 150 FEAD---AQMVYL-EKKGLVHGIISEDSDLLIFGCRKLITKLTDHGEGIEICRDDFPRLP 205

Query: 170 KKWGIP---PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
            K+ +    PE+   +  L+G   D   GIP IG  TA  L++++  ++NI+ N  R
Sbjct: 206 SKFPLSQLCPEETRAMVCLSG--CDYTAGIPKIGLLTAMKLVRKHKTMDNIIKNIQR 260


>gi|197935873|ref|YP_002213709.1| DNA polymerase [Ralstonia phage RSB1]
 gi|197927036|dbj|BAG70378.1| DNA polymerase [Ralstonia phage RSB1]
          Length = 323

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 23/103 (22%)

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQL-------------VSPTTCLYDTVKEEK 162
           EADD  A   Y +      V   + DKD+  L             V P    YD V E  
Sbjct: 138 EADDGFAKAAYESPAPADLVAHFTADKDMRMLPGIHLGWKDFTRVVVPAGA-YDVVGE-- 194

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
           ID +    KW         +Q L GD+ DNI GIPG+G K +A
Sbjct: 195 IDGKQYGHKW-------FWMQCLHGDTADNIGGIPGVGEKGSA 230


>gi|13541391|ref|NP_111079.1| flap endonuclease-1 [Thermoplasma volcanium GSS1]
 gi|28380020|sp|Q97B98|FEN_THEVO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|14324774|dbj|BAB59701.1| FLAP endonuclease-1 [Thermoplasma volcanium GSS1]
          Length = 335

 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y TV  E + ++ V+KK GI  ++++ +  L G   +   GI GIG K A  L++
Sbjct: 195 PRKNVYRTVYPEYVMLDEVLKKNGINQDQLIEIGILVGTDFNE--GIKGIGAKKALALIK 252

Query: 210 EYGNLENIL 218
           + GN++ +L
Sbjct: 253 KEGNIKAVL 261


>gi|322796178|gb|EFZ18754.1| hypothetical protein SINV_08354 [Solenopsis invicta]
          Length = 1253

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 37/148 (25%)

Query: 687 SLPNHINKRTQRVHTFYS-------LASTMTGRLASLEPNL---QNIPIKTDLGQKIRRA 736
           SLP  I KRT+R HT Y        ++ T+T R  ++EP      N  ++  +G ++R  
Sbjct: 838 SLPG-IVKRTKR-HTRYGAIIPQVVVSGTLTRR--AVEPTWMTASNAHVER-IGSELRCM 892

Query: 737 FISPPTKKLISADYSQIELRIL-----AHIAKI---TP-----LYQVFENSLDIHRMVAA 783
             +PP   ++ AD    EL I      AH  +I   TP     L     N  D+H  V A
Sbjct: 893 IQAPPGYNIVGADVDSQELWIASVIGDAHYKRIHGATPFGWMTLIGTKSNGTDMHS-VTA 951

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           +  G++        R HAK IN++ IYG
Sbjct: 952 KAIGIS--------RDHAKVINYARIYG 971


>gi|262212261|gb|ACY35747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 39/220 (17%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSL- 775
           PNL  +P   +      R+   P    L + +D S +ELR L H        ++ E  + 
Sbjct: 1   PNLAQVPSAHEY-----RSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKLAEEVVN 55

Query: 776 -DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA----- 829
            DIH  +A EI+G +        R+  K + + +IYG    +L       +S A+     
Sbjct: 56  GDIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQE 106

Query: 830 --DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
               I +    F  ++  I++      ++G ++ + GR I     N            AA
Sbjct: 107 IRGKIMQGLSGFADLNAAIQERA----KSGVLKGLDGRPIRLQGKN-----------HAA 151

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +N  +Q + A I +  +I  H+ L++  +    L  IHDE
Sbjct: 152 LNCLLQSAGAIICKLWVIRTHELLQEAGIDYYPLAFIHDE 191


>gi|439149|gb|AAA64535.1| DNA polymerase [Bacillus phage SPO1]
          Length = 91

 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 19/97 (19%)

Query: 673 EWRQLSKIKSTYADSL-----PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           E+R+ + + + +   L     P++I      VH  Y++  T+TGRL+S EPN Q  P K 
Sbjct: 1   EFRKANHLYNNFVSKLSLMIDPDNI------VHPSYNIHGTVTGRLSSNEPNAQQFPRKV 54

Query: 728 D------LGQKIRRAFIS--PPTKKLISADYSQIELR 756
           +         +I++ F S       ++  DYSQ+ELR
Sbjct: 55  NTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELR 91


>gi|149047437|gb|EDM00107.1| rCG36059 [Rattus norvegicus]
          Length = 129

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ME   I ID++ +++ SA +  +L  LE+  + ++GE+F + S  QL +ILF KLK 
Sbjct: 1   MENHKISIDKEEMERTSALLGAHLKKLEQEAHFVAGEQFLIMSNNQLREILFGKLKL 57


>gi|256272689|gb|EEU07666.1| Rad2p [Saccharomyces cerevisiae JAY291]
          Length = 1031

 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 17/189 (8%)

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           +E++     ++    E+ +  +  V+     FGIP I     EA+   A    +   +G 
Sbjct: 751 DELFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYI-TAPMEAEAQCAELLQLNLVDG- 808

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGD 188
              II+ D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G 
Sbjct: 809 ---IITDDSDV--FLFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGS 863

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETARLSRK 245
              N  G+ G+G  ++  ++ E+GNL+N      N    K+K+  EN  E     +L   
Sbjct: 864 DYTN--GLKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNN 921

Query: 246 LVMLRTDVP 254
            ++L  D P
Sbjct: 922 EIILDDDFP 930


>gi|50302949|ref|XP_451412.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640543|emb|CAH03000.1| KLLA0A09427p [Kluyveromyces lactis]
          Length = 1011

 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 116/280 (41%), Gaps = 24/280 (8%)

Query: 50  QNSRKESIASHFAVIFDYPAVT---FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           Q +R++   +HF    +   V      +E++   K ++    E+ +  +  ++     FG
Sbjct: 703 QLTREQEDYNHFKSTLNPNLVNTAFLEDELFEQQKKDKRDADEVTIEMIHEIQSLLSRFG 762

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           IP I     EA+   AT   +   +G    +I+ D D+   +   T +Y  + +EK  +E
Sbjct: 763 IPYI-TAPMEAEAQCATLLQLKLVDG----VITDDSDV--FLFGGTHVYKNMFQEKNYVE 815

Query: 167 HVI-----KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI--LI 219
           +       +K G+  +K++ L  L G   D  PG+ GIG      +L E+G+L+      
Sbjct: 816 YYSLDLFDQKLGLDRDKLIQLAQLLGS--DYTPGLRGIGPVMGVEILAEFGSLKEFAKWY 873

Query: 220 NASRI-KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           N  +  KQK   E   +     RL    ++L  + P     +  I    +  +      +
Sbjct: 874 NEGQFDKQKLEGETAFQKQLRKRLVSNEIILDDNFPSEAVYDAYIHPTVDADKTKFVWGS 933

Query: 279 LEFTKLINRVATTYDCDAANIE----PVVLDINTTENKGI 314
            +  KL + +  T   D A  +    P++ D+N  +  G+
Sbjct: 934 PDLDKLRSFLQQTIGWDKAKSDEVLIPLIRDLNKRKATGV 973


>gi|154339662|ref|XP_001565788.1| flap endonuclease-1 (FEN-1) [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|317374905|sp|A4HFE4|FEN1_LEIBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|134063106|emb|CAM45304.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 395

 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 13/122 (10%)

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK 162
           Q  G+P I+    EA+   A       K+G A  + + D D +   S     +  + + K
Sbjct: 150 QLMGVPVIQAPS-EAEAQCAELV----KKGKAWAVGTEDMDALTFGSTVMLRHLNISDAK 204

Query: 163 ------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
                 I ++ V++  G+  ++ V L  L G   D +P +PGIG + A   +Q YGN+E+
Sbjct: 205 KRPIAEIHLDEVLQATGLSMDQFVDLCILLG--CDYVPKVPGIGPQRAWEGIQRYGNIES 262

Query: 217 IL 218
            L
Sbjct: 263 FL 264


>gi|41614884|ref|NP_963382.1| flap endonuclease-1 [Nanoarchaeum equitans Kin4-M]
 gi|48427872|sp|P61942|FEN_NANEQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|40068608|gb|AAR38943.1| NEQ088 [Nanoarchaeum equitans Kin4-M]
          Length = 339

 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  VK E I++E V+  W I  E+++ +  L G   +    +PGIG KTA  +++
Sbjct: 198 PGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLLGTDYNE--KVPGIGPKTAIEIVK 255

Query: 210 EYGN 213
            +G+
Sbjct: 256 RFGD 259


>gi|151943533|gb|EDN61844.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
          Length = 1031

 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 17/189 (8%)

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           +E++     ++    E+ +  +  V+     FGIP I     EA+   A    +   +G 
Sbjct: 751 DELFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYI-TAPMEAEAQCAELLQLNLVDG- 808

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGD 188
              II+ D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G 
Sbjct: 809 ---IITDDSDV--FLFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGS 863

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETARLSRK 245
              N  G+ G+G  ++  ++ E+GNL+N      N    K+K+  EN  E     +L   
Sbjct: 864 DYTN--GLKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNN 921

Query: 246 LVMLRTDVP 254
            ++L  D P
Sbjct: 922 EIILDDDFP 930


>gi|6321697|ref|NP_011774.1| Rad2p [Saccharomyces cerevisiae S288c]
 gi|131811|sp|P07276|RAD2_YEAST RecName: Full=DNA repair protein RAD2
 gi|172329|gb|AAA66928.1| RAD2 [Saccharomyces cerevisiae]
 gi|1323470|emb|CAA97287.1| RAD2 [Saccharomyces cerevisiae]
 gi|285812449|tpg|DAA08349.1| TPA: Rad2p [Saccharomyces cerevisiae S288c]
          Length = 1031

 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 17/189 (8%)

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           +E++     ++    E+ +  +  V+     FGIP I     EA+   A    +   +G 
Sbjct: 751 DELFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYI-TAPMEAEAQCAELLQLNLVDG- 808

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGD 188
              II+ D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G 
Sbjct: 809 ---IITDDSDV--FLFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGS 863

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETARLSRK 245
              N  G+ G+G  ++  ++ E+GNL+N      N    K+K+  EN  E     +L   
Sbjct: 864 DYTN--GLKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNN 921

Query: 246 LVMLRTDVP 254
            ++L  D P
Sbjct: 922 EIILDDDFP 930


>gi|323354903|gb|EGA86736.1| Rad2p [Saccharomyces cerevisiae VL3]
          Length = 998

 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-- 162
           FGIP I     EA+   A    +   +G    II+ D D+   +   T +Y  +  EK  
Sbjct: 782 FGIPYI-TAPMEAEAQCAELLQLNLVDG----IITDDSDV--FLFGGTKIYKNMFHEKNY 834

Query: 163 ---IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-- 217
               D E ++K  G+  + M+ L  L G    N  G+ G+G  ++  ++ E+GNL+N   
Sbjct: 835 VEFYDAESILKLLGLDRKNMIELAQLLGSDYTN--GLKGMGPVSSIEVIAEFGNLKNFKD 892

Query: 218 -LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP 254
              N    K+K+  EN  E     +L    ++L  D P
Sbjct: 893 WYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDDDFP 930


>gi|118596590|dbj|BAF37954.1| putative flap endonuclease-1 [Sulfolobus sp. M02]
          Length = 304

 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 12/127 (9%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+++ ++KK G+  E+++ +  + G    N  GI G G KTA  +++
Sbjct: 152 PGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDY-NPDGIKGYGVKTAYRIIK 210

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           +YG+LE   I    I + K   N+ E        R L +   +  +  P E+L L  C+ 
Sbjct: 211 KYGSLEKA-IEKGEIPKIKVNFNVEEI-------RGLFL---NPQVVEPKENLELAACDS 259

Query: 270 PRLISFL 276
            +++  L
Sbjct: 260 NKILDIL 266


>gi|207344901|gb|EDZ71889.1| YGR258Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1031

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-- 162
           FGIP I     EA+   A    +   +G    II+ D D+   +   T +Y  +  EK  
Sbjct: 782 FGIPYI-TAPMEAEAQCAELLQLNLVDG----IITDDSDV--FLFGGTKIYKNMFHEKNY 834

Query: 163 ---IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-- 217
               D E ++K  G+  + M+ L  L G    N  G+ G+G  ++  ++ E+GNL+N   
Sbjct: 835 VEFYDAESILKLLGLDRKNMIELAQLLGSDYTN--GLKGMGPVSSIEVIAEFGNLKNFKD 892

Query: 218 -LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP 254
              N    K+K+  EN  E     +L    ++L  D P
Sbjct: 893 WYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDDDFP 930


>gi|225626345|ref|YP_002727841.1| DNA polymerase A [Pseudomonas phage phikF77]
 gi|225594854|emb|CAX63139.1| DNA polymerase A [Pseudomonas phage phikF77]
          Length = 808

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 24/166 (14%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTD----LGQKIRRAFIS--PPTKKLISADYSQ 752
           +H   +  +T T RL+S  PNLQ +P K +     G +++  F+S       +   DY+ 
Sbjct: 461 IHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGADGMIGETDYTA 520

Query: 753 IELRILAHIAKITPLYQVFENSLDIH--RMVAA----------EIFGVNIEKVSP----- 795
           +E+ +LA ++K   L        D+H  R+             ++  +  +   P     
Sbjct: 521 LEVVMLAALSKDRNLLAKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPWHGRM 580

Query: 796 -QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            Q R++ K   FS  YG S   +A        EA +++      FP
Sbjct: 581 MQARKNIKPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFP 626


>gi|302808411|ref|XP_002985900.1| hypothetical protein SELMODRAFT_424803 [Selaginella moellendorffii]
 gi|300146407|gb|EFJ13077.1| hypothetical protein SELMODRAFT_424803 [Selaginella moellendorffii]
          Length = 151

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 14/91 (15%)

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAETARLSRKLV 247
           D +PG+PG    TA  L++++G+LEN L++A+ I+   +   ++ + E++     + +++
Sbjct: 42  DGVPGVPGF---TALKLMRKHGSLEN-LVSAAAIRTVVKPYMQDALKEHSVLLEKNLEVL 97

Query: 248 MLRTDVPITIPLE-------HLILEDCNGPR 271
            LR D+ + +PLE         IL  C+G R
Sbjct: 98  SLRRDIDVELPLEWCLSRMSQTILLHCSGWR 128


>gi|33300830|ref|NP_877458.1| putative DNA directed DNA polymerase [Pseudomonas phage phiKMV]
 gi|195546662|ref|YP_002117743.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|195546724|ref|YP_002117802.1| putative exonuclease [Pseudomonas phage PT2]
 gi|33284801|emb|CAD44210.1| putative DNA directed DNA polymerase [Enterobacteria phage phiKMV]
 gi|158187623|gb|ABW23100.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|165880733|gb|ABY70988.1| putative exonuclease [Pseudomonas phage PT2]
          Length = 807

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 24/166 (14%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTD----LGQKIRRAFIS--PPTKKLISADYSQ 752
           +H   +  +T T RL+S  PNLQ +P K +     G +++  F+S       +   DY+ 
Sbjct: 460 IHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGADGMIGETDYTA 519

Query: 753 IELRILAHIAKITPLYQVFENSLDIH--RMVAA----------EIFGVNIEKVSP----- 795
           +E+ +LA ++K   L        D+H  R+             ++  +  +   P     
Sbjct: 520 LEVVMLAALSKDRNLLAKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPWHGRM 579

Query: 796 -QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            Q R++ K   FS  YG S   +A        EA +++      FP
Sbjct: 580 MQARKNIKPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFP 625


>gi|241955293|ref|XP_002420367.1| exodeoxyribonuclease, putative [Candida dubliniensis CD36]
 gi|223643709|emb|CAX41445.1| exodeoxyribonuclease, putative [Candida dubliniensis CD36]
          Length = 715

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 25/130 (19%)

Query: 129 EKEGFAVTIISTDKDLM---------QLVSPTTCL------YDTVKEEKIDIEHVIKKWG 173
           EK G    I+S D DL+         +L    TC+      +D VKE    I + + ++ 
Sbjct: 159 EKMGVVDGILSEDSDLLIFGCKKLITKLKDDGTCVEINRDKFDKVKE----IPY-LNQYN 213

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           +   ++V +  L+G   D   G+PGIG +TA  L+++Y N   +LI A R   KK  +N 
Sbjct: 214 MEQLRLVAM--LSG--CDYTKGVPGIGLRTAFQLVRKYNNFTKVLI-ALRSMGKKIPDNF 268

Query: 234 LEYAETARLS 243
           ++  + A L+
Sbjct: 269 IDEVKLANLA 278


>gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi]
 gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi]
          Length = 1429

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 75/151 (49%), Gaps = 6/151 (3%)

Query: 443  NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
            N     IL  L+K   +E+ +KI  N K+D   L     ++    D  + S +LD  ++ 
Sbjct: 1280 NITNNNILDGLRKILNDENIVKIIQNGKFDTKFLLYNNFNITNIFDTYIASKLLDKNKNM 1339

Query: 503  HD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +   + +I +K+LS     + K +++S+  + + ++    +A  +S+ +L+L+  L  ++
Sbjct: 1340 YGFKLNNIVEKYLSVY---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQI 1396

Query: 561  IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            + E  + +   ++   I  +  ME+ GI +D
Sbjct: 1397 VAEN-MQIVNDIENKCILPICDMELNGITVD 1426


>gi|48477300|ref|YP_023006.1| flap endonuclease-1 [Picrophilus torridus DSM 9790]
 gi|73919351|sp|Q6L2I9|FEN_PICTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|48429948|gb|AAT42813.1| RAD-2/FEN-1 exonuclease [Picrophilus torridus DSM 9790]
          Length = 338

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 157 TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
            V  E ID+   +   GI  E+++ +  LTG   +  PG+ GIG KTA  L+++Y ++ +
Sbjct: 204 NVNPEIIDLNENLSNLGISREQLIYIGILTGTDFN--PGVKGIGAKTALSLIKKYNDIYS 261

Query: 217 IL 218
           ++
Sbjct: 262 VI 263


>gi|167600464|ref|YP_001671963.1| DNA polymerase [Pseudomonas phage LUZ19]
 gi|161168327|emb|CAP45491.1| DNA polymerase [Pseudomonas phage LUZ19]
          Length = 807

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 24/166 (14%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTD----LGQKIRRAFIS--PPTKKLISADYSQ 752
           +H   +  +T T RL+S  PNLQ +P K +     G +++  F+S       +   DY+ 
Sbjct: 460 IHHSLNTTATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGADGMIGETDYTA 519

Query: 753 IELRILAHIAKITPLYQVFENSLDIH--RMVAA----------EIFGVNIEKVSP----- 795
           +E+ +LA ++K   L        D+H  R+             ++  +  +   P     
Sbjct: 520 LEVVMLAALSKDRNLLAKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPWHGRM 579

Query: 796 -QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            Q R++ K   FS  YG S   +A        EA +++      FP
Sbjct: 580 MQARKNIKPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFP 625


>gi|229472283|gb|ACQ72656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472335|gb|ACQ72682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 41/221 (18%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP---LYQVFEN 773
           PNL  +P       + R  F     +  + AD S +ELR L H +A+        +V E 
Sbjct: 1   PNLAQVPS----AHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEG 56

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH  + AEI+G +        R+  K + + +IYG    +L      P+++A    K
Sbjct: 57  --DIHTAL-AEIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAGAPKAQAVKKGK 105

Query: 834 RYFHR-------FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
               R       F  ++  +++      ++G ++ + GR I     N            A
Sbjct: 106 EIRSRIMADLDGFAALNAAVQERA----KSGVLKGLDGRPIRLQGKN-----------HA 150

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           A+N  +Q + A I +  ++  ++ L++  +    +  IHDE
Sbjct: 151 ALNYLLQSAGAVICKLWLLRSYELLDEAGIDYFPMAFIHDE 191


>gi|291335808|gb|ADD95408.1| T7-like exonuclease [uncultured phage MedDCM-OCT-S05-C849]
          Length = 254

 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 23/143 (16%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT--YIAE 129
           FR +I P YK +R +       ++  ++   + + +  I     EADD +  Y   Y   
Sbjct: 69  FRKKILPSYKGHRNRKKPCGFKRV--IQKLKENYKV--IIKDTLEADDAMGIYATKYTGN 124

Query: 130 KEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
                  I+S DKD+ Q+      LYD  +  +I  E    +W +       +QA+ GD+
Sbjct: 125 ------IIVSPDKDMRQIAGK---LYDFNETVEITPEEG-ARWHL-------IQAMAGDN 167

Query: 190 IDNIPGIPGIGYKTAALLLQEYG 212
            D   G+PGIG K A  + +  G
Sbjct: 168 TDGYSGVPGIGIKRAEQIFKLKG 190


>gi|262212259|gb|ACY35746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 39/220 (17%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSL- 775
           PNL  +P   +      R+   P    L + +D S +ELR L H        +  E  + 
Sbjct: 1   PNLAQVPSAHEY-----RSLFKPSDNHLQVGSDTSGLELRCLGHYLSRYDGGKFAEEGVN 55

Query: 776 -DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA----- 829
            DIH  +A EI+G +        R+  K + + +IYG    +L       +S A+     
Sbjct: 56  GDIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQE 106

Query: 830 --DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
               I +    F  ++  I++      ++G ++ + GR I     N            AA
Sbjct: 107 IRGKIMQGLSGFADLNAAIQERA----KSGVLKGLDGRPIRLQGKN-----------HAA 151

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +N  +Q + A I +  +I  H+ L++  +    L  IHDE
Sbjct: 152 LNYLLQSAGAIICKLWVIRTHELLQEAGIDYYPLAFIHDE 191


>gi|47934808|gb|AAT39842.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 253

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           +H   +    +TGR     PN+  +P  +++ G++ R+ F  PP   L+ +D S +ELR 
Sbjct: 170 IHGSVNPNGAVTGRATHSYPNVAQVPGSQSEYGKECRQLFTVPPGWVLMGSDASGLELRC 229

Query: 758 LAH 760
           L H
Sbjct: 230 LGH 232


>gi|156319560|ref|XP_001618134.1| hypothetical protein NEMVEDRAFT_v1g225484 [Nematostella vectensis]
 gi|156197578|gb|EDO26034.1| predicted protein [Nematostella vectensis]
          Length = 758

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 145/378 (38%), Gaps = 52/378 (13%)

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIY-DLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           G+QID +   ++     K L +    ++   +   FN  S +Q+   ++        +K 
Sbjct: 85  GLQIDMEKRNELRTASQKQLDTARSRLHVKFADPAFNPGSWQQVEKYIYNIF---GASKP 141

Query: 646 KTGQWKTTAQDLEQINCGD-NPIIK----NILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           K G+ K+   +   +   + +P++     +IL +R+  K   TY D L     +    ++
Sbjct: 142 KIGKSKSGTDEKNLLAVAEQHPLLARLTTDILAYREAQKAIGTYYDFL-RFQGRLLWALN 200

Query: 701 TFYSLASTMTGRLASL--EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            F +    M    +SL     +QNIP         ++  ++    +L  AD SQ E R  
Sbjct: 201 PFGTETERMACSASSLWCGTQVQNIP------SYAKQMLVADDGYELFEADNSQSEGRTT 254

Query: 759 AHIAKITPLYQVFENS-LDIHRMVAAEIFGVNIEKVSPQMRR------------------ 799
           A+ A+   L    E +  D +R +    F +  E+V+   R                   
Sbjct: 255 AYCAQEPALIAALETAGRDFYRTLGTLFFNIPYEEVTDFFRNKVLKRIVHGTNYMMGGKT 314

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEA---------ADYIKRYFHR-FPGIHEYIEKT 849
             + I   ++Y  +P      + IP  +A         A Y+   +H  FP I ++  + 
Sbjct: 315 FTENIGIVVLYETAPKVGIKLVEIPTKDAEMEMTIRQFAKYLLDLYHEPFPRIRKWYGEI 374

Query: 850 KNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
           K  V   GY+ +  G  R  +  I    + +R++    + N  ++      TR      H
Sbjct: 375 KTEVATTGYIVSPLGHVRKCFGNITRDHNMLRSLVAHQSQNLSVEILNIGFTR----IYH 430

Query: 909 KSLEDHKLATKMLLQIHD 926
           + +   K   ++  QIHD
Sbjct: 431 ELVLPDKGNIRLKAQIHD 448


>gi|297526096|ref|YP_003668120.1| flap structure-specific endonuclease [Staphylothermus hellenicus
           DSM 12710]
 gi|297255012|gb|ADI31221.1| flap structure-specific endonuclease [Staphylothermus hellenicus
           DSM 12710]
          Length = 350

 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+++ +++K GI  E+++ +  L G    N  G+ GIG K A  L++
Sbjct: 201 PRKNVYIEIKPEIIELKKLLEKLGITREQLIYVALLIGTDY-NPDGVKGIGPKKALQLVK 259

Query: 210 EYGNLENILINASRIKQKKRRENILEY 236
            Y  L+ IL    + +     E I+EY
Sbjct: 260 AYKTLDKILKAIPKTEFPVEPEKIVEY 286


>gi|241762843|ref|ZP_04760906.1| Glutamate synthase (ferredoxin) [Acidovorax delafieldii 2AN]
 gi|241368018|gb|EER62223.1| Glutamate synthase (ferredoxin) [Acidovorax delafieldii 2AN]
          Length = 1577

 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 38/207 (18%)

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
           + T +  R    Y+  AA +EP     +     G  I   +DR+  ++ S++    D   
Sbjct: 334 QHTTMDERRRAFYEYHAAMLEPWDGPASIVFTDGRQIGATLDRNG-LRPSRYCITDDDLV 392

Query: 340 KINSEQT----------------PQKLFLERLQKLSQYPINNDSY-TKIVNTKDIQQWVQ 382
            + SE                  P K+FL  L++     I++D     IVNTK  +QW++
Sbjct: 393 IMGSESGVLPVPENKIVRKWRLQPGKMFLIDLEQGRM--IDDDELKANIVNTKPYKQWIE 450

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
            L        K+ + T DA H+ P A  +  LD++    +  E I   ++        G 
Sbjct: 451 NLR------IKLDSITADAAHAVPPAAGLPLLDRQQAFGYTQEDIKFLMAPMAKNGEEGI 504

Query: 443 NTL------------TKEILSYLKKFF 457
            ++             K + +Y K+ F
Sbjct: 505 GSMGNDSPLAVLSGKNKPLYNYFKQLF 531


>gi|308374489|ref|ZP_07436247.2| hypothetical protein TMFG_01048 [Mycobacterium tuberculosis
           SUMu006]
 gi|308341782|gb|EFP30633.1| hypothetical protein TMFG_01048 [Mycobacterium tuberculosis
           SUMu006]
          Length = 137

 Score = 39.7 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A
Sbjct: 80  LVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLA 131


>gi|229579856|ref|YP_002838255.1| flap endonuclease-1 [Sulfolobus islandicus Y.G.57.14]
 gi|238620410|ref|YP_002915236.1| flap endonuclease-1 [Sulfolobus islandicus M.16.4]
 gi|284998466|ref|YP_003420234.1| Xpg I [Sulfolobus islandicus L.D.8.5]
 gi|304372803|ref|YP_003858299.1| flap-1 endonuclease [Sulfolobus islandicus L.S.2.15]
 gi|228010571|gb|ACP46333.1| XPG I domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|238381480|gb|ACR42568.1| XPG I domain protein [Sulfolobus islandicus M.16.4]
 gi|284446362|gb|ADB87864.1| Xpg I [Sulfolobus islandicus L.D.8.5]
 gi|323475286|gb|ADX85892.1| XPG I domain protein [Sulfolobus islandicus REY15A]
          Length = 302

 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 21/128 (16%)

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVS-------- 149
           +A GIP +  Q     +  A Y  I    GF+    S D D +     +LV         
Sbjct: 93  RAMGIPIV--QAPSEGEAEAAYLNIL---GFSWAAASQDYDSILFGAKRLVRNLTITGKR 147

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
             P   +Y  +K E I+ E ++KK GI  E+++ +  L G    N  GI GIG + A  +
Sbjct: 148 KLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDY-NPDGIKGIGPERALKI 206

Query: 208 LQEYGNLE 215
           +++YG +E
Sbjct: 207 IKKYGKIE 214


>gi|323478011|gb|ADX83249.1| XPG I domain protein [Sulfolobus islandicus HVE10/4]
          Length = 302

 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 21/128 (16%)

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVS-------- 149
           +A GIP +  Q     +  A Y  I    GF+    S D D +     +LV         
Sbjct: 93  RAMGIPIV--QAPSEGEAEAAYLNII---GFSWAAASQDYDSILFGAKRLVRNLTITGKR 147

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
             P   +Y  +K E I+ E ++KK GI  E+++ +  L G    N  GI GIG + A  +
Sbjct: 148 KLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDY-NPDGIKGIGPERALKI 206

Query: 208 LQEYGNLE 215
           +++YG +E
Sbjct: 207 IKKYGKIE 214


>gi|229581484|ref|YP_002839883.1| flap endonuclease-1 [Sulfolobus islandicus Y.N.15.51]
 gi|228012200|gb|ACP47961.1| XPG I domain protein [Sulfolobus islandicus Y.N.15.51]
          Length = 302

 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 21/128 (16%)

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVS-------- 149
           +A GIP +  Q     +  A Y  I    GF+    S D D +     +LV         
Sbjct: 93  RAMGIPIV--QAPSEGEAEAAYLNIL---GFSWAAASQDYDSILFGAKRLVRNLTITGKR 147

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
             P   +Y  +K E I+ E ++KK GI  E+++ +  L G    N  GI GIG + A  +
Sbjct: 148 KLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDY-NPDGIKGIGPERALKI 206

Query: 208 LQEYGNLE 215
           +++YG +E
Sbjct: 207 IKKYGKIE 214


>gi|227828219|ref|YP_002829999.1| flap endonuclease-1 [Sulfolobus islandicus M.14.25]
 gi|227460015|gb|ACP38701.1| XPG I domain protein [Sulfolobus islandicus M.14.25]
          Length = 302

 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 21/128 (16%)

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVS-------- 149
           +A GIP +  Q     +  A Y  I    GF+    S D D +     +LV         
Sbjct: 93  RAMGIPIV--QAPSEGEAEAAYLNIL---GFSWAAASQDYDSILFGAKRLVRNLTITGKR 147

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
             P   +Y  +K E I+ E ++KK GI  E+++ +  L G    N  GI GIG + A  +
Sbjct: 148 KLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDY-NPDGIKGIGPERALKI 206

Query: 208 LQEYGNLE 215
           +++YG +E
Sbjct: 207 IKKYGKIE 214


>gi|281416187|ref|YP_003347922.1| exonuclease [Vibrio phage N4]
 gi|237701494|gb|ACR16487.1| exonuclease [Vibrio phage N4]
          Length = 287

 Score = 39.7 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 82/217 (37%), Gaps = 27/217 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNML--WKLLQNSRKESIASHFA 62
           NH  ++D    +Y+A  A  + ++  D    +     C+ +  W +L  S +  +A   A
Sbjct: 7   NHALILDADYLVYQAMSAAEIETQWSD----DVWTLECDHVKAWDILIGSVQAIVAKRKA 62

Query: 63  VIFDYPAVTF------RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                  + F      R ++ P YKANR K           V    Q     +      E
Sbjct: 63  WATSKIVMCFTDDHNWRKDVLPTYKANR-KATRKPTGYRAFVNKVMQYPEWESFLRPNLE 121

Query: 117 ADD---IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            DD   I+ T   +   +    T++S DKD   +  P    + T  E K   E    +W 
Sbjct: 122 GDDCMGILGTRPSLVGAK--TSTLVSCDKDFNTI--PCEFFWLTTGEIKTITEEDADRWH 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           +       LQ + GD  D   GI G+G  TA   L+E
Sbjct: 178 M-------LQTIMGDVTDGYSGIKGMGKDTALAFLEE 207


>gi|52548675|gb|AAU82524.1| DNA repair protein [uncultured archaeon GZfos18C8]
          Length = 190

 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  VK E I+++  + + GI  E+++ +  L G   D  PGI GIG K A  L+ 
Sbjct: 48  PGKKVYVDVKLEIIELQPNLDRLGITEEQLIDIAILVGTDYD--PGIHGIGAKKALQLIY 105

Query: 210 EYGNLENIL 218
           ++G++E+ L
Sbjct: 106 KHGSIEDAL 114


>gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group]
 gi|113623082|dbj|BAF23027.1| Os08g0175600 [Oryza sativa Japonica Group]
          Length = 570

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 80/194 (41%), Gaps = 43/194 (22%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS--- 502
           +++L     FFE+    K+ HN  +D  V+   GI + GF  D M ++ + DS R +   
Sbjct: 333 RDVLMEFAPFFEDPSIKKVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGG 392

Query: 503 --------------------HDIASIAQKWLSYTRKEILK--SRKSSIPIDKISDSQVQE 540
                               H    ++ K + + RK + K  S   +I I+ +   Q ++
Sbjct: 393 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTI-FGRKNVRKNGSEGKTISIEPVKKLQRED 451

Query: 541 HAIE------NSNVILQLWLLLRPKLIVEK----------LLHVYERLDKPMIDVVSQME 584
             +       +S   L+L+  L+ KL  ++          +   YE   +P   ++ +ME
Sbjct: 452 RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKME 511

Query: 585 ITGIQIDQDLLKQV 598
             G+ +D+  L ++
Sbjct: 512 TEGMFVDRAYLSEI 525


>gi|325171301|ref|YP_004251272.1| exonuclease [Vibrio phage ICP3]
 gi|323512007|gb|ADX87469.1| exonuclease [Vibrio phage ICP3]
 gi|323512054|gb|ADX87515.1| exonuclease [Vibrio phage ICP3_2009_B]
 gi|323512103|gb|ADX87563.1| exonuclease [Vibrio phage ICP3_2009_A]
 gi|323512152|gb|ADX87611.1| exonuclease [Vibrio phage ICP3_2008_A]
 gi|323512200|gb|ADX87658.1| exonuclease [Vibrio phage ICP3_2007_A]
          Length = 291

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 82/217 (37%), Gaps = 27/217 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNML--WKLLQNSRKESIASHFA 62
           NH  ++D    +Y+A  A  + ++  D    +     C+ +  W +L  S +  +A   A
Sbjct: 7   NHALILDADYLVYQAMSAAEIETQWSD----DVWTLECDHVKAWDILIGSVQTIVAKRKA 62

Query: 63  VIFDYPAVTF------RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                  + F      R ++ P YKANR K           V    Q     +      E
Sbjct: 63  WATSKIVMCFTDDHNWRKDVLPTYKANR-KATRKPTGYRAFVNKVMQYPEWESFLRPNLE 121

Query: 117 ADD---IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            DD   I+ T   +   +    T++S DKD   +  P    + T  E K   E    +W 
Sbjct: 122 GDDCMGILGTRPSLVGAK--TSTLVSCDKDFNTI--PCEFFWLTTGEIKTITEEDADRWH 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           +       LQ + GD  D   GI G+G  TA   L+E
Sbjct: 178 M-------LQTIMGDVTDGYSGIKGMGKDTALAFLEE 207


>gi|304372804|ref|YP_003858300.1| flap endonuclease-1 [Sulfolobus islandicus M.16.27]
          Length = 351

 Score = 39.3 bits (90), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+ E ++KK GI  E+++ +  L G    N  GI GIG + A  +++
Sbjct: 199 PNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDY-NPDGIKGIGPERALKIIK 257

Query: 210 EYGNLE 215
           +YG +E
Sbjct: 258 KYGKIE 263


>gi|229472599|gb|ACQ72814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 41/221 (18%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP---LYQVFEN 773
           PNL  +P       + R  F     +  + AD S +ELR L H +A+        +V E 
Sbjct: 1   PNLAQVPS----AHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEG 56

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH  + AEI+G +        R+  K + + +IYG    +L      P+++A    K
Sbjct: 57  --DIHTAL-AEIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAGAPKAQAVKKGK 105

Query: 834 RYFHR-------FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
               R       F  ++  +++      ++G ++ + GR I     N            A
Sbjct: 106 EIRSRIMADLDGFAALNAAVQERA----KSGVLKGLDGRPIRLQGKN-----------HA 150

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           A+N  +Q + A I +  ++  ++ L++  +    +  +HDE
Sbjct: 151 ALNYLLQSAGAVICKLWLLRSYELLDEAGIDYFPMAFVHDE 191


>gi|109290194|ref|YP_656443.1| RNaseH [Aeromonas phage 25]
 gi|104345867|gb|ABF72767.1| RNaseH [Aeromonas phage 25]
          Length = 304

 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 17/145 (11%)

Query: 63  VIFDYPA-VTFRNEIYPDYKANR-------PKIPEMLLPQLPLV--RLATQAFGIPAIEI 112
           + FD  A V +R +I   YK NR       P   E+L   +  V   +     G+  I++
Sbjct: 66  IAFDDSAMVYWRRDIAWYYKLNRKANKKESPWDWELLFSIINKVVNEMLNIYPGVKMIKL 125

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK-K 171
              EADDIIA       +EG  V I S+D D  QL       Y  VK+     +  +K K
Sbjct: 126 DKTEADDIIAVLVKKFTEEGRCVMISSSDSDFTQLHK-----YKGVKQYSPAQKKAVKPK 180

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGI 196
           +G P   +  ++ + GD+ D + GI
Sbjct: 181 YGSPKHDLF-VKLIKGDAKDGVSGI 204


>gi|291335807|gb|ADD95407.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C849]
          Length = 124

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           ++ R  F + P   ++ AD + IELR+LAH          ++       ++  +I  VN 
Sbjct: 8   KEFRELFTASPGMTMVGADLAGIELRMLAH------YLGRYDGGRYADILLNGDIHQVNA 61

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLA 818
           +K+    RR  KT++++ +YG    +L 
Sbjct: 62  DKIGIS-RRQVKTVSYAYLYGAGNLKLG 88


>gi|229472217|gb|ACQ72623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 41/221 (18%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-IAKITP---LYQVFEN 773
           PNL  +P       + R  F     +  + AD S +ELR L H +A+        +V E 
Sbjct: 1   PNLAQVPS----AHEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEG 56

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH  + AEI+G +        R+  K + + +IYG    +L      P+++A    K
Sbjct: 57  --DIHTAL-AEIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAGAPKAQAVKKGK 105

Query: 834 RYFHR-------FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
               R       F  ++  +++      ++G ++ + GR I     N            A
Sbjct: 106 EIRSRIMADLDGFAALNAAVQERA----KSGVLKGLDGRPIRLQGKN-----------HA 150

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           A+N  +Q + A I +  ++  ++ L++  +    +  +HDE
Sbjct: 151 ALNYLLQSAGAVIRKLWLLRSYELLDEAGIDYFPMAFVHDE 191


>gi|158425216|ref|YP_001526508.1| putative phage exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158332105|dbj|BAF89590.1| putative phage exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 247

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 58/150 (38%), Gaps = 32/150 (21%)

Query: 72  FRNEIYPDYKANRPKI--PEMLLPQLPLVRLATQAFGIPAIEIQGFEADD---IIATYTY 126
           FR  + P YK  R  I  P +L      +     A+  P     G E DD   I+AT+  
Sbjct: 70  FRRGVDPSYKGTRSSIRKPIILKRFKDFLVQERGAYWRP-----GLEGDDCMGILATHPK 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVS------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +   E     I+S DKD+  +                V EE+ D  H+            
Sbjct: 125 LIPGEK---VIVSIDKDMKTVPGLFIRWGAEGASLTEVSEEEADYWHL------------ 169

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
             Q LTGD  D   G PG+G K A  +L+E
Sbjct: 170 -YQTLTGDVTDGYKGCPGVGPKKAEAILKE 198


>gi|148727214|ref|YP_001285706.1| p37 [Xanthomonas phage Xop411]
 gi|116583514|gb|ABK00184.1| p37 [Xanthomonas phage Xop411]
          Length = 309

 Score = 39.3 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 15/157 (9%)

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-----DIEHVIK 170
           EADD IA  T  A   G    ++S DKD  ++ +    ++ T++  +I     D     K
Sbjct: 139 EADDGIAYCTEAAYTLGRPGAVMSADKDF-RMFAGVHVVWRTLQVVEIKPGTYDQMFAGK 197

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ-EYGNLENILINASRIKQKKR 229
           ++G    K   LQ + GD  DNI G+PG G   A   L     N + +    +  KQ+ +
Sbjct: 198 QYG---HKFFWLQMIMGDQADNIVGLPGCGEVAAEKTLHGTSANQDAMAAVVALYKQRMK 254

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
                 + E A     L+ +RTD  +  P + L + D
Sbjct: 255 ELWAPHFVEQA----SLLWMRTD-SVASPTDFLKIAD 286


>gi|310722239|ref|YP_003969063.1| RNaseH [Aeromonas phage phiAS4]
 gi|306021082|gb|ADM79617.1| RNaseH [Aeromonas phage phiAS4]
          Length = 304

 Score = 39.3 bits (90), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
           G+  I++   EADDIIA       +EG  V I S+D D  QL       Y  VK+     
Sbjct: 119 GVKMIKLDKTEADDIIAVLVKKFTEEGRCVMISSSDSDFTQLHK-----YKGVKQYSPAQ 173

Query: 166 EHVIK-KWGIPPEKMVCLQALTGDSIDNIPGI 196
           +  +K K+G P   +  ++ + GD+ D + GI
Sbjct: 174 KKAVKPKYGSPKHDLF-VKLIKGDAKDGVSGI 204


>gi|254581264|ref|XP_002496617.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
 gi|238939509|emb|CAR27684.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
          Length = 1239

 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 36/192 (18%)

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAA 829
           D+H   A +I G N        R  AK  N+  IYG    + ATQL       +P  EA 
Sbjct: 757 DLHTKTA-QILGCN--------RNEAKIFNYGRIYGAG-VKFATQLLKKFNPSLPDEEAQ 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQ--NGYVETIFGRRIHYDEINSPKSSI-------- 879
               + +    G    I+++K F +    G    +F +     E + P++ +        
Sbjct: 807 GIANQLYENTKG---KIQRSKIFKKFWFGGSESILFNKLESIAEQDEPRTPVLGCGITFS 863

Query: 880 ---RNINER----AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
              RN+       + IN  IQ S  D       S++  +  + +  ++ + IHDE+ F V
Sbjct: 864 LMKRNLRTNTFLPSRINWTIQSSGVDYLHLLCCSMNYLIATYHIKARLCISIHDEIRFLV 923

Query: 933 PEEEITTASQII 944
            +E+   AS  +
Sbjct: 924 ADEDKYRASMAL 935


>gi|68299734|ref|YP_249583.1| Exonuclease [Vibriophage VP4]
 gi|66473273|gb|AAY46282.1| exonuclease [Vibriophage VP4]
          Length = 287

 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 82/217 (37%), Gaps = 27/217 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNML--WKLLQNSRKESIASHFA 62
           NH  ++D    +Y+A  A  + ++  D    +     C+ +  W +L  S +  +A   A
Sbjct: 7   NHALILDADYLVYQAMSAAEIETQWSD----DVWTLECDHVKAWDILIGSVQTIVAKRKA 62

Query: 63  VIFDYPAVTF------RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                  + F      R ++ P YKANR K           V    Q     +      E
Sbjct: 63  WATSKIVMCFTDENNWRKDVLPTYKANR-KATRKPTGYRAFVNKVMQYPEWESFLRPNLE 121

Query: 117 ADD---IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            DD   I+ T   +   +    T++S DKD    + P    + T  E K   E    +W 
Sbjct: 122 GDDCMGILGTRPSLVGAK--TSTLVSCDKDFN--IIPCEFFWLTTGEIKTITEEDADRWH 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           +       LQ + GD  D   GI G+G  TA   L+E
Sbjct: 178 M-------LQTIMGDVTDGYSGIKGMGKDTALAFLEE 207


>gi|330721714|gb|EGG99712.1| DNA polymerase I [gamma proteobacterium IMCC2047]
          Length = 51

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +Q+HDELV EV + ++   SQ +   M +     + L VPL V + V  NW +
Sbjct: 1   MQVHDELVLEVADSDVELVSQGLNQYMSET----VKLDVPLLVEVGVGENWGQ 49


>gi|145349446|ref|XP_001419144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|317374919|sp|A4S1G4|FEN1_OSTLU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|144579375|gb|ABO97437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 389

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC--LYDTVKEEK 162
            G+P  E    EA+   A       K G    + + D D +   +P     L     ++K
Sbjct: 149 LGVPVFEAP-CEAEASCAAMC----KAGLVWAVATEDMDTLTFAAPRLARNLMAPKSQDK 203

Query: 163 ----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
                D + V+   G+ PE+ + +  L G   D    I GIG KTA  L++E+G++E IL
Sbjct: 204 PVLEFDYDKVLAGLGLTPEQFIDMCILCG--CDYCDTIRGIGPKTALKLIKEHGSIEKIL 261


>gi|51013165|gb|AAT92876.1| YGR258C [Saccharomyces cerevisiae]
          Length = 1031

 Score = 38.9 bits (89), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 12/126 (9%)

Query: 137 IISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           II+ D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G    
Sbjct: 809 IITDDSDV--FLFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYT 866

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETARLSRKLVM 248
           N  G+ G+G  ++  ++ E+GNL+N      N    K+K+  EN  E     +L    ++
Sbjct: 867 N--GLKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEII 924

Query: 249 LRTDVP 254
           L  D P
Sbjct: 925 LDDDFP 930


>gi|193083976|gb|ACF09651.1| XPG I flap structure-specific endonuclease [uncultured marine
           crenarchaeote AD1000-56-E4]
 gi|193084049|gb|ACF09722.1| XPG I flap structure-specific endonuclease [uncultured marine
           crenarchaeote KM3-86-C1]
          Length = 341

 Score = 38.9 bits (89), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 21/128 (16%)

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD-----LMQLVS---------- 149
           FGIP ++ +     D  AT  Y+  K G A  + S D D      ++L+           
Sbjct: 142 FGIPYVQAKA----DGEATAAYM-NKNGMADAVASQDFDSILFGAVKLIRNFTNSGRRKL 196

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P    Y  ++ E I  +  +   GI  E+++ +  L G    N  G   IG KTA  +++
Sbjct: 197 PNRNTYIDIEPEIISYQKSLDALGITGEQIIDIGILIGTDF-NPDGFERIGPKTALKMIK 255

Query: 210 EYGNLENI 217
           EYG LE+I
Sbjct: 256 EYGKLEDI 263


>gi|167933075|ref|ZP_02520162.1| hypothetical protein cdivTM7_00514 [candidate division TM7
          single-cell isolate TM7b]
          Length = 53

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 1  MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQ 50
          M     L ++DG S  YR +YA P LS K DG P   + GF ++  ++++
Sbjct: 5  MVHMKRLVIIDGKSVFYRGYYAMPGLSTK-DGTPTGGVFGFASLSLEIVK 53


>gi|33340353|gb|AAQ14704.1|AF320576_163 putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 909

 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 69/162 (42%), Gaps = 15/162 (9%)

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR-YFHRFPGIHEYIEK-TKNFVRQ 855
           R+ AK   +++++G    + A  ++   +E     K+ YF R P I + +++  ++F   
Sbjct: 715 RKKAKNGIYALLFGAGDEKFAKTIKASSTEEGALTKQTYFVRLPKIKKLLDRLEEDFKAT 774

Query: 856 NGYVETIFGRR---IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
              +E +FG+         I    + +   +    +N  + GS A +    +   ++ L 
Sbjct: 775 KKALEEVFGKTSAIAKGGYIKVAGAWLWCKSPHKLLNYTLMGSEAQVQNEGINLANRELT 834

Query: 913 DHKL----------ATKMLLQIHDELVFEVPEEEITTASQII 944
           + KL            + +   HDE+  EVP +++    +II
Sbjct: 835 ERKLTVLNGRKPAIGARWVCSYHDEVSLEVPTKDVPDVKEII 876


>gi|38707863|ref|NP_944958.1| Putative DNA polymerase [Enterobacteria phage Felix 01]
 gi|33340466|gb|AAQ14817.1| putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 906

 Score = 38.9 bits (89), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 69/162 (42%), Gaps = 15/162 (9%)

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR-YFHRFPGIHEYIEK-TKNFVRQ 855
           R+ AK   +++++G    + A  ++   +E     K+ YF R P I + +++  ++F   
Sbjct: 712 RKKAKNGIYALLFGAGDEKFAKTIKASSTEEGALTKQTYFVRLPKIKKLLDRLEEDFKAT 771

Query: 856 NGYVETIFGRR---IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
              +E +FG+         I    + +   +    +N  + GS A +    +   ++ L 
Sbjct: 772 KKALEEVFGKTSAIAKGGYIKVAGAWLWCKSPHKLLNYTLMGSEAQVQNEGINLANRELT 831

Query: 913 DHKL----------ATKMLLQIHDELVFEVPEEEITTASQII 944
           + KL            + +   HDE+  EVP +++    +II
Sbjct: 832 ERKLTVLNGRKPAIGARWVCSYHDEVSLEVPTKDVPDVKEII 873


>gi|328462327|gb|EGF34407.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 70

 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           EH+ +  G+ P + + ++AL GD+ DN PG+  +G K A+ L+Q    L+   I +++
Sbjct: 13  EHMKEVNGVTPTEFIDMKALMGDNSDNYPGVTKVGPKIASRLIQNTVPLKGFTIISTK 70


>gi|153799363|gb|ABS50441.1| DNA polymerase I [Enterococcus phage F4]
          Length = 299

 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 19/194 (9%)

Query: 453 LKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510
           +K+ FE++    + HN  +D  L     GI+ R    D +++ ++LD    S+ +  +A 
Sbjct: 85  IKRVFESDK-ATVWHNATFDMGLAKASLGIAPRTPVHDTLILMHLLDEDLPSYQLKVLAT 143

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL-----QLWLLLRPKLIVEKL 565
           ++L+       +    +     I+    + +A +++ V       QL +L +P     K+
Sbjct: 144 RFLNIPSDTFEEMFGKNAKFADIAVEIARWYAGKDTYVGFLLFEWQLNILNKPSFA--KI 201

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLL----KQVSAEISKNLLSLEENIYDLSGEKF 621
             VYER+++P I    +ME  G  I+ + +    K+  AE+ +    L+    D+     
Sbjct: 202 KKVYERIERPCIMATFEMESEGFHINMEEVEVQRKESEAELEEISARLQARFGDV----- 256

Query: 622 NLSSPKQLGDILFT 635
           N SSP QL  +L+ 
Sbjct: 257 NFSSPSQLLKLLYV 270


>gi|310831000|ref|YP_003969643.1| putative RNaseH [Cafeteria roenbergensis virus BV-PW1]
 gi|309386184|gb|ADO67044.1| putative RNaseH [Cafeteria roenbergensis virus BV-PW1]
          Length = 287

 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 17/134 (12%)

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGF--AVTIISTDKDLMQLVSPTTCLYDTVKE 160
           + + I  +++   EADDIIA+     +K  F   + I+S D D  QL      + +  K+
Sbjct: 132 KPYPIHQLKLPETEADDIIASICIYMKKHNFNEEIIIVSGDDDFTQLGRENVSILNYHKK 191

Query: 161 E--KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI-----PGIGYKTAALLLQEYGN 213
           +  K D E          E  + L+ + GD  DNIP I       +  KT  L+ +    
Sbjct: 192 KLIKFDNEEC--------EDKLRLKIINGDKSDNIPSIFPKSRKEVSLKTRKLVKESISA 243

Query: 214 LENILINASRIKQK 227
           +     N   IK K
Sbjct: 244 MNEFFENNPEIKSK 257


>gi|13928294|dbj|BAB46986.1| hypothetical protein [Staphylococcus aureus]
          Length = 344

 Score = 38.5 bits (88), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 104/255 (40%), Gaps = 33/255 (12%)

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D L   +N  T R++T  SL  T T R+ +   NLQ +P      + ++   +    KK+
Sbjct: 110 DRLEQALNG-TNRLYTQLSLIGTRTHRITTKNFNLQGLP------KAVQHTILPSKFKKV 162

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + D+   E  + A++ + + L  +      ++  + +E+       +S ++R   K   
Sbjct: 163 YTVDFKSFEPSVAAYMTQDSKLIDLLNQKDGLYDALLSEL------GLSDELRVFVKRA- 215

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIK--RYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
                 I  F      + P+ +   Y+   ++        + IE  K+  + N       
Sbjct: 216 -----FIGSFLFGGNFKNPKFKLNQYVSEVQWLDAVSQFTKVIELKKHVEKSNS---MPM 267

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
              I +D      SSI  I         +Q  A+ I +  ++ V+K+  D K   K+++ 
Sbjct: 268 PYSIEHDMSAFQGSSIMAIY--------VQTVASYIFKHILLKVYKAQCDQK-TFKIIVP 318

Query: 924 IHDELVFEVPEEEIT 938
           IHD ++ E  +EEI 
Sbjct: 319 IHDAIMIECEDEEIA 333


>gi|149236109|ref|XP_001523932.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452308|gb|EDK46564.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
          Length = 975

 Score = 38.5 bits (88), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAA 829
           D+H   A+ I G++        R  AK  N+  IYG    + AT L       +   EA 
Sbjct: 676 DLHSKTAS-ILGIS--------RNDAKVFNYGRIYGAG-LKFATTLLKQFNPSLSEKEAE 725

Query: 830 DYIKRYFHRFPG-IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI--------- 879
           D  K+ +    G I        N     G    +F       +   P++ +         
Sbjct: 726 DTAKKLYASTKGKIRGSKSVKSNKFYSGGSESVMFNALEAIAQQPKPRTPVLGAQITEAL 785

Query: 880 --RNINER----AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
             RN+N+     + +N  IQ S  D     ++S+   +E + +  ++ + +HDEL + V 
Sbjct: 786 TKRNLNKNTYMTSRVNWTIQSSGVDYLHLLIVSMDYLIERYGIDARLAITVHDELRYLVK 845

Query: 934 EEEITTASQII 944
           EE+   AS ++
Sbjct: 846 EEDKYMASLLL 856


>gi|14324641|dbj|BAB59568.1| TVG0411609 [Thermoplasma volcanium GSS1]
          Length = 346

 Score = 38.5 bits (88), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 9/158 (5%)

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG--RRIHYDEI 872
           + +A ++++P      Y K     F GI +Y      FV+++G+   +    + +  +E+
Sbjct: 12  YLVAVRVKVPNPIPEKYWKSISDEFYGIQKYYHIGAMFVKESGHWNILMNAFKVLPTEEV 71

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-----DHKLATKMLLQIHDE 927
            S    I N+  +  +   +   A  I R       KS++     D  +   ++   ++E
Sbjct: 72  ISIVDYINNVYTKMGLGTVVSNDAKHIIRSITDISDKSIDRLAGIDGLVLYPVISIGNNE 131

Query: 928 L--VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           L  VFE PEE     S++I+  + KA LP   +++ +K
Sbjct: 132 LIMVFEYPEEASDEVSRMILDYVNKAPLPAEIIKMEMK 169


>gi|259146759|emb|CAY80016.1| Rad2p [Saccharomyces cerevisiae EC1118]
          Length = 1031

 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 17/189 (8%)

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           +E++     ++    E+ +  +  V+     FGIP I     EA+   A    +   +G 
Sbjct: 751 DELFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYI-TAPMEAEAQCAELLQLNLVDG- 808

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGD 188
              II+ D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G 
Sbjct: 809 ---IITDDSDV--FLFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGS 863

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETARLSRK 245
              N  G+ G+G  ++  ++ E+GNL++      N    K+K+  EN  E     +L   
Sbjct: 864 DYTN--GLKGMGPVSSIEVIAEFGNLKDFKDWYNNGQFDKRKQETENKFEKDLRKKLVNN 921

Query: 246 LVMLRTDVP 254
            ++L  D P
Sbjct: 922 EIILDDDFP 930


>gi|308071862|emb|CBW54783.1| putative DNA polymerase A [Pantoea phage LIMElight]
          Length = 778

 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 112/284 (39%), Gaps = 52/284 (18%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISADYSQIELR 756
           +H   +  +T+T RL+S  PNLQN+P   D   K+++ F S      ++I  DYS +E+ 
Sbjct: 447 IHHRLNTCATITTRLSSGNPNLQNLP--RDGTSKVKQMFTSRFGSAGRIIEVDYSALEVV 504

Query: 757 I-LAHIAKITPLYQVFENSLDI--------HRMVAAEIFGVNIE-------KVSPQMRRH 800
           +   H   +  L  + +   D+        H M   ++  + +E       K+  Q R  
Sbjct: 505 MGCVHTGDLK-LLHLLQTGTDMHCYRLAFRHNMPYEDVLKLAVEDEDGPDYKMWKQRRTD 563

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG-------IHEYIEKTKNF- 852
            K  +F+  YG +   +A    +      +++      FP        I + +E+T N  
Sbjct: 564 IKPPSFAAQYGATAKGIAFATGLSLEFCQEFLDNEAKLFPDSIKFRDVIRKEVERTGNLP 623

Query: 853 --------------VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA--INAPIQGSA 896
                         V + GY  +  G+R  + +    +   + ++ +A    N   QG A
Sbjct: 624 GQLKREQNDDGSFSVYKVGYWTSPSGQRYSFRQKKQWRDGRQTMDYKATEMANYWCQGEA 683

Query: 897 ADITRRA--MISVH---KSLEDHKLATKMLLQIHDELVFEVPEE 935
             +   A  M+  H       D K+A  ++  +HD    +  +E
Sbjct: 684 FFMMAVAFGMLIRHLIANDFYDGKVA--LMTNVHDAAYLDAADE 725


>gi|13541256|ref|NP_110944.1| hypothetical protein TVN0425 [Thermoplasma volcanium GSS1]
          Length = 341

 Score = 38.5 bits (88), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 9/158 (5%)

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG--RRIHYDEI 872
           + +A ++++P      Y K     F GI +Y      FV+++G+   +    + +  +E+
Sbjct: 7   YLVAVRVKVPNPIPEKYWKSISDEFYGIQKYYHIGAMFVKESGHWNILMNAFKVLPTEEV 66

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-----DHKLATKMLLQIHDE 927
            S    I N+  +  +   +   A  I R       KS++     D  +   ++   ++E
Sbjct: 67  ISIVDYINNVYTKMGLGTVVSNDAKHIIRSITDISDKSIDRLAGIDGLVLYPVISIGNNE 126

Query: 928 L--VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           L  VFE PEE     S++I+  + KA LP   +++ +K
Sbjct: 127 LIMVFEYPEEASDEVSRMILDYVNKAPLPAEIIKMEMK 164


>gi|116668192|pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
          Length = 346

 Score = 38.5 bits (88), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+ E ++KK GI  E+++ +  L G    N  GI GIG + A  +++
Sbjct: 194 PNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDY-NPDGIRGIGPERALKIIK 252

Query: 210 EYGNLENIL 218
           +YG +E  +
Sbjct: 253 KYGKIEKAM 261


>gi|28380021|sp|Q980U8|FEN_SULSO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 349

 Score = 38.5 bits (88), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+ E ++KK GI  E+++ +  L G    N  GI GIG + A  +++
Sbjct: 197 PNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDY-NPDGIRGIGPERALKIIK 255

Query: 210 EYGNLENIL 218
           +YG +E  +
Sbjct: 256 KYGKIEKAM 264


>gi|293336273|ref|NP_001167833.1| hypothetical protein LOC100381533 [Zea mays]
 gi|223944315|gb|ACN26241.1| unknown [Zea mays]
          Length = 1028

 Score = 38.5 bits (88), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 20/188 (10%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           +K  TD +    S+   I + +++ KDD + +       +S+       GK TL K +  
Sbjct: 155 YKKETDLVGIKKSRNKVIRMLSMETKDDDALESHQALKIVSI-VGVGGLGKTTLAKTVHD 213

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
            LKK F+   F+ IG     +           R FE ++L    LD      D+A    +
Sbjct: 214 MLKKQFDCSAFISIGRTPNLN-----------RTFEKMLLK---LDREYKQVDMARWDLE 259

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQE---HAIENSNVILQLWLLLRPKLIVEKLLHV 568
                  E LK ++  I +D I D    E   +A++++N   ++ +  R   IV KL  V
Sbjct: 260 QFKNELDEFLKDKRYLIVVDDIWDVDSWEAIRYALKDNNCGSRIIMTTRNFGIVTKLEEV 319

Query: 569 YERLDKPM 576
           Y RL KP+
Sbjct: 320 Y-RL-KPL 325


>gi|304379977|ref|ZP_07362706.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|14021052|dbj|BAB47676.1| hypothetical protein [Staphylococcus aureus]
 gi|27529902|dbj|BAC53839.1| hypothetical protein [Staphylococcus aureus]
 gi|166197579|dbj|BAG06188.1| hypothetical protein [Staphylococcus aureus]
 gi|205825351|dbj|BAG71442.1| hypothetical protein [Staphylococcus aureus]
 gi|221148468|gb|ACL99829.1| hypothetical protein [Staphylococcus pseudintermedius]
 gi|238768493|dbj|BAH66805.1| hypothetical protein [Staphylococcus aureus]
 gi|269939553|emb|CBI47912.1| hypothetical protein SATW20_00300 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|283469258|emb|CAQ48469.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|288551798|gb|ADC53394.1| hypothetical protein [Staphylococcus aureus]
 gi|288964699|gb|ADC79456.1| hypothetical protein [Staphylococcus aureus]
 gi|304341557|gb|EFM07467.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|329315338|gb|AEB89751.1| hypothetical protein SAT0131_02880 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 366

 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 104/255 (40%), Gaps = 33/255 (12%)

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D L   +N  T R++T  SL  T T R+ +   NLQ +P      + ++   +    KK+
Sbjct: 110 DRLEQALNG-TNRLYTQLSLIGTRTHRITTKNFNLQGLP------KAVQHTILPSKFKKV 162

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + D+   E  + A++ + + L  +      ++  + +E+       +S ++R   K   
Sbjct: 163 YTVDFKSFEPSVAAYMTQDSKLIDLLNQKDGLYDALLSEL------GLSDELRVFVKRA- 215

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIK--RYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
                 I  F      + P+ +   Y+   ++        + IE  K+  + N       
Sbjct: 216 -----FIGSFLFGGNFKNPKFKLNQYVSEVQWLDAVSQFTKVIELKKHVEKSNSMP---M 267

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
              I +D      SSI  I         +Q  A+ I +  ++ V+K+  D K   K+++ 
Sbjct: 268 PYSIEHDMSAFQGSSIMAIY--------VQTVASYIFKHILLKVYKAQCDQK-TFKIIVP 318

Query: 924 IHDELVFEVPEEEIT 938
           IHD ++ E  +EEI 
Sbjct: 319 IHDAIMIECEDEEIA 333


>gi|207111070|ref|ZP_03245232.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_CA4C1]
          Length = 67

 Score = 38.1 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 20  TKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 67


>gi|261601793|gb|ACX91396.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
          Length = 351

 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+ E ++KK GI  E+++ +  L G    N  GI GIG + A  +++
Sbjct: 199 PNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDY-NPDGIRGIGPERALKIIK 257

Query: 210 EYGNLENIL 218
           +YG +E  +
Sbjct: 258 KYGKIEKAM 266


>gi|193084394|gb|ACF10047.1| XPG I flap structure-specific endonuclease [uncultured marine
           crenarchaeote SAT1000-21-C11]
          Length = 341

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 21/128 (16%)

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVS---------- 149
           FGIP I+ +     D  AT  ++  K G A  + S D D +     +LV           
Sbjct: 142 FGIPYIQAKA----DGEATAAHM-NKTGKAYAVASQDYDSILFGATKLVRNFTNSGRRKI 196

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P    Y  V+ E I  +  +   GI  E+++ +  L G    N  G   IG KTA  +++
Sbjct: 197 PNRNTYIDVEPEMISHQKSLDALGITGEQIIDIGILVGTDF-NPDGFERIGPKTALKMIK 255

Query: 210 EYGNLENI 217
           EYG LE+I
Sbjct: 256 EYGKLEDI 263


>gi|15897130|ref|NP_341735.1| flap endonuclease-1 [Sulfolobus solfataricus P2]
 gi|284174372|ref|ZP_06388341.1| flap endonuclease-1 [Sulfolobus solfataricus 98/2]
 gi|25310048|pir||F90158 DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [imported] -
           Sulfolobus solfataricus
 gi|13813313|gb|AAK40525.1| DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [Sulfolobus
           solfataricus P2]
          Length = 302

 Score = 38.1 bits (87), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  +K E I+ E ++KK GI  E+++ +  L G    N  GI GIG + A  +++
Sbjct: 150 PNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDY-NPDGIRGIGPERALKIIK 208

Query: 210 EYGNLENIL 218
           +YG +E  +
Sbjct: 209 KYGKIEKAM 217


>gi|238882475|gb|EEQ46113.1| hypothetical protein CAWG_04457 [Candida albicans WO-1]
          Length = 699

 Score = 38.1 bits (87), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 24/106 (22%)

Query: 129 EKEGFAVTIISTDKDLM---------QLVSPTTCL------YDTVKEEKIDIEHVIKKWG 173
           EK G    I+S D DL+         +L    TC+      +D VKE    I + + ++ 
Sbjct: 159 EKMGIVDGILSEDSDLLIFGCKKLITKLKDDGTCVEINRDKFDKVKE----IPY-LNQYN 213

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
           +   ++V +  L+G   D   G+PGIG KTA  L+++Y N   I+I
Sbjct: 214 MEQLRLVAM--LSG--CDYTKGVPGIGLKTAFQLVRKYNNFTKIMI 255


>gi|281419843|ref|ZP_06250842.1| hypothetical protein PREVCOP_03696 [Prevotella copri DSM 18205]
 gi|281405970|gb|EFB36650.1| hypothetical protein PREVCOP_03696 [Prevotella copri DSM 18205]
          Length = 216

 Score = 38.1 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 591 DQDLLKQVSAEISKNLLSLEE-NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           D    K++ + I KN   L++ N+Y +  + F       +G+++  KL+ PS  K     
Sbjct: 85  DDAFFKEIDSSIRKNCHKLQDVNVYLIQFQNFTQDLMMLMGNLMKFKLRLPSFMKNSL-- 142

Query: 650 WKTTAQDLEQI----NCGDNPIIKNILEWRQLSK 679
           +K TA+ +E I    +  D  ++K +L+ RQ +K
Sbjct: 143 YKLTAKTVEDIFTKNDFSDASVLKTVLQLRQFNK 176


>gi|68478167|ref|XP_716825.1| hypothetical protein CaO19.8541 [Candida albicans SC5314]
 gi|68478288|ref|XP_716765.1| hypothetical protein CaO19.926 [Candida albicans SC5314]
 gi|46438448|gb|EAK97778.1| hypothetical protein CaO19.926 [Candida albicans SC5314]
 gi|46438510|gb|EAK97839.1| hypothetical protein CaO19.8541 [Candida albicans SC5314]
          Length = 699

 Score = 38.1 bits (87), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 24/106 (22%)

Query: 129 EKEGFAVTIISTDKDLM---------QLVSPTTCL------YDTVKEEKIDIEHVIKKWG 173
           EK G    I+S D DL+         +L    TC+      +D VKE    I + + ++ 
Sbjct: 159 EKMGIVDGILSEDSDLLIFGCKKLITKLKDDGTCVEINRDKFDKVKE----IPY-LNQYN 213

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
           +   ++V +  L+G   D   G+PGIG KTA  L+++Y N   I+I
Sbjct: 214 MEQLRLVAM--LSG--CDYTKGVPGIGLKTAFQLVRKYNNFTKIMI 255


>gi|225450415|ref|XP_002278964.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 341

 Score = 38.1 bits (87), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC--L 154
           L+RL     G+P IE    EA+   A       K G    + S D D +   +P     L
Sbjct: 145 LLRL----MGVPVIEAPS-EAEAQCAALC----KSGKVYAVASEDMDSLTFGAPKFLRHL 195

Query: 155 YDTVKEE----KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
            D    +    + DI  ++++  +  ++ + L  L+G   D    I GIG +TA  L+++
Sbjct: 196 MDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQ 253

Query: 211 YGNLENILINASR 223
           +G++ENIL N +R
Sbjct: 254 HGSIENILENINR 266


>gi|296089863|emb|CBI39682.3| unnamed protein product [Vitis vinifera]
          Length = 416

 Score = 38.1 bits (87), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC--L 154
           L+RL     G+P IE    EA+   A       K G    + S D D +   +P     L
Sbjct: 145 LLRL----MGVPVIEAPS-EAEAQCAALC----KSGKVYAVASEDMDSLTFGAPKFLRHL 195

Query: 155 YDTVKEE----KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
            D    +    + DI  ++++  +  ++ + L  L+G   D    I GIG +TA  L+++
Sbjct: 196 MDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQ 253

Query: 211 YGNLENILINASR 223
           +G++ENIL N +R
Sbjct: 254 HGSIENILENINR 266


>gi|313126141|ref|YP_004036411.1| flap endonuclease 1 [Halogeometricum borinquense DSM 11551]
 gi|312292506|gb|ADQ66966.1| flap endonuclease 1 [Halogeometricum borinquense DSM 11551]
          Length = 326

 Score = 37.7 bits (86), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 12/114 (10%)

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--EKIDIEHVIKKWGIPPEKM 179
           A  +Y+A K+G    + S D D + L +P T    T K   E +D+E  +    +  E++
Sbjct: 157 AQASYMA-KQGDVDYVGSEDYDTLLLGAPYTLRQLTSKGDPELMDLEATLSDLDVTQEQL 215

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-------INASRIKQ 226
           + +  L G   D   GI G+G KTA   ++E+G+L  +L        NA R+++
Sbjct: 216 IDIAILCG--TDFNEGISGVGPKTALKEVKEHGDLWTVLEARDDYIENADRVRE 267


>gi|167821768|ref|ZP_02453448.1| 38L [Burkholderia pseudomallei 91]
          Length = 808

 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 72/161 (44%), Gaps = 15/161 (9%)

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR---- 698
           A +  G +  +++ +E +   D P +K +    +L K   TY  +      ++       
Sbjct: 382 ASSTPGLYSVSSEVIEALGNRDIPFLKTLANVAKLGKDLGTYYITTDEKTGQQKGMLTLV 441

Query: 699 -----VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ-KIRRAFISP--PTKKLISADY 750
                +H   +  ST+T R +  +PNLQN+   +  G+ +++  F+S      +++ +D+
Sbjct: 442 GDDGIIHQKINHTSTVTARFSEQDPNLQNV---SGAGKSQVKSVFVSRWLADGQVVQSDF 498

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           + +E+ I A +     L       LD+H +  ++  G+  E
Sbjct: 499 TSLEIFIQAILTGCKQLIDDLRAGLDMHCVRVSQKEGITYE 539


>gi|322830259|gb|EFZ33345.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
           cruzi]
          Length = 274

 Score = 37.7 bits (86), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 11/86 (12%)

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIH----RMVAAEIFGVNIEKVSP----- 795
           +I ADYSQ+E+ +LA +++ T + Q   + +D H     ++  E +   + K        
Sbjct: 1   MIEADYSQLEVVVLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYENVVRKAKQERDPH 60

Query: 796 --QMRRHAKTINFSIIYGISPFRLAT 819
             Q+R+ AKT +F   YG     +AT
Sbjct: 61  YIQLRQQAKTFSFQRQYGAGIATIAT 86


>gi|37651699|ref|NP_932573.1| RNaseH ribonuclease [Aeromonas phage 44RR2.8t]
 gi|66392019|ref|YP_238944.1| rnh RNaseH ribonuclease [Aeromonas phage 31]
 gi|34732999|gb|AAQ81536.1| RNaseH ribonuclease [Aeromonas phage 44RR2.8t]
 gi|62114856|gb|AAX63704.1| rnh RNaseH ribonuclease [Aeromonas phage 31]
          Length = 307

 Score = 37.7 bits (86), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
           G+  I+I   EADDIIA  T +   +G  V I S+D D  QL       +  VK+     
Sbjct: 122 GVKMIKIGKTEADDIIAILTKLFTDQGRCVMISSSDSDFTQLHK-----FKGVKQYSPAQ 176

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
           +  +K     P+  +  + + GD  D + GI
Sbjct: 177 KKSVKPKNGSPKHDLFYKIIKGDGKDGVAGI 207


>gi|156843134|ref|XP_001644636.1| hypothetical protein Kpol_526p31 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115283|gb|EDO16778.1| hypothetical protein Kpol_526p31 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 487

 Score = 37.7 bits (86), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 24/122 (19%)

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVSPTTCLYDTVKEEKIDIEHVI 169
           FEAD   A   Y+ EK+     IIS D DL+     +L++      + ++  K D   + 
Sbjct: 149 FEAD---AQMVYL-EKQNIVQGIISEDSDLLIFGCRRLITKLNDFGECIEICKDDFNKLP 204

Query: 170 KKW--------GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
           KK+        GI  + MVCL        D   GIP IG   A  L+ +Y N++ IL++ 
Sbjct: 205 KKFPLHELSEEGI--KTMVCLSGC-----DYTNGIPRIGLVKAIKLVHQYRNIDKILLSI 257

Query: 222 SR 223
            R
Sbjct: 258 RR 259


Searching..................................................done


Results from round 2




>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 1261 bits (3263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 976/976 (100%), Positives = 976/976 (100%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH
Sbjct: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI
Sbjct: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV
Sbjct: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
           CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA
Sbjct: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE
Sbjct: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ
Sbjct: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT
Sbjct: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG
Sbjct: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE
Sbjct: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA
Sbjct: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI
Sbjct: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
           NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL
Sbjct: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM
Sbjct: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP
Sbjct: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT
Sbjct: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV
Sbjct: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960

Query: 961 PLKVNIKVSNNWQEEN 976
           PLKVNIKVSNNWQEEN
Sbjct: 961 PLKVNIKVSNNWQEEN 976


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score = 1094 bits (2830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 494/995 (49%), Positives = 677/995 (68%), Gaps = 19/995 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPVNA++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNE+Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRNELYDLYKANRTAPPEDLVPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTIIS+DKDLMQLV+    +YD +K+++I +  V++KWG+ PE
Sbjct: 121 DDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVVEKWGVAPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRENI+  A
Sbjct: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRENIIANA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + ARLSR+LV LRTDVP+   LE L+LE  NGP+LI+FLKA+EFT L  RVA   D DA+
Sbjct: 241 DLARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEATDSDAS 300

Query: 298 NIEPVVLDINTTENKG--IAIETEIDRDTTIKTSQFSSLSDQTSKINSE-QTPQKLFLER 354
            IE   + +    +                 KT+  +S +    K+  E   P  L   R
Sbjct: 301 AIEAANVPVQWGADAHGPDLDAAPAVAAADDKTAVPASTNAPARKVTGEGSAPTDLATAR 360

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
               S   I+  +YT I +  ++ +WV      G  +F   T ++D   ++ +  +++  
Sbjct: 361 QTVFSAAKIDTTAYTTIRDLAELDRWVAAARETGVVAFDTETTSLDPMQAELVGFSLAIA 420

Query: 415 D-QKDDTSFKVETIFIDLSVHTSQDS---------TGKNTLTKEILSYLKKFFENEHFLK 464
           D  KD +   +   ++ L+  T                     E L+ LK   E+E  LK
Sbjct: 421 DNGKDASGTDIRAAYVPLTHKTGSGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLK 480

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEIL 521
           I  N+KYD L++ R+G+ M+ F+D ML+SYVL++G+++H + +++++WL +T    K++ 
Sbjct: 481 IAQNLKYDYLLMKRHGVVMQSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYKDVA 540

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            S KSSI  D +   +   +A E+++V L+LW++L+P+L  E+L  VYERL++P++ V++
Sbjct: 541 GSGKSSITFDFVDIDKATAYAAEDADVTLRLWMVLKPRLAAERLTSVYERLERPLVPVLA 600

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME  GI +D+ +L ++S E+++   + EE +Y L+GE+FN+ SPKQLGDILF ++  P 
Sbjct: 601 HMEERGITVDRQILSRLSGELAQKAAAFEEEVYQLAGERFNIGSPKQLGDILFGRMGLPG 660

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           G+KTKTGQW T+AQ LE +      + + I++WRQL+K+KSTY D+LP +++ +T+RVHT
Sbjct: 661 GSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHT 720

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            Y+LAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KL+SADYSQIELR+LAH+
Sbjct: 721 SYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHV 780

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A I  L   FEN +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL
Sbjct: 781 ADIPQLRSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQL 840

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I RSEA +YIK+YF RFPGI +Y+E TK F R+NGYVETIFGRR HY EI S   S++ 
Sbjct: 841 SIARSEAGEYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPSMKA 900

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
            NERAAINAPIQGSAADI RRAM+ +   LE  KL+ +MLLQ+HDEL+FEV E EI    
Sbjct: 901 FNERAAINAPIQGSAADIIRRAMVRIEPVLEAEKLSARMLLQVHDELIFEVEEGEIEKTL 960

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            I+V  ME A +P I++RVPLKV+ + ++NW E +
Sbjct: 961 PIVVSVMENAAMPAISMRVPLKVDARAADNWDEAH 995


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score = 1094 bits (2829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/982 (48%), Positives = 672/982 (68%), Gaps = 12/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNEIYP+YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRNEIYPEYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  IAE+ G  VTI+S+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARIAEQAGGDVTIVSSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  ++SR+LV L+TDVP+ + L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKISRELVTLKTDVPLDVDLDSLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +EP  ++ +   +     + ++        SQ +S     +  +   TP+ L  +R  +
Sbjct: 301 AVEPCHVETDWGADAH-GPDVDVPAKADNAASQPTSA---VAASDQGYTPKALAEKRATE 356

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+  +YT I +   ++ W+ +    G  +F   T ++D   ++ +  +++    +
Sbjct: 357 AAAQTIDTSAYTCIRDIATLKLWLAEAVETGVLAFDTETTSLDPMQAELVGFSLALAPGR 416

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                         E L+ LK   E+   LKI  N+KYD LV+ 
Sbjct: 417 --AAYIPLQHKSGAGDLLGGGMVEGQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMR 474

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +     K++  S KS++  D + 
Sbjct: 475 RHGINTVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIPYKDVAGSGKSAVSFDMVD 534

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV++ ME  GI +D+ +
Sbjct: 535 LDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEERGIAVDRQV 594

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY+L+GE+FN+ SPKQLGDILF K+     +KTKTGQW T+A
Sbjct: 595 LSRLSGDLAQAAAAYEDEIYELAGERFNIGSPKQLGDILFGKMSLSGASKTKTGQWSTSA 654

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN  T+RVHT Y++AST TGRL+
Sbjct: 655 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSYAMASTSTGRLS 714

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KL+SADYSQIELR+LAH+A I  L Q F + 
Sbjct: 715 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRVLAHVADIAQLKQAFADG 774

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 775 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 834

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R+NGYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 835 YFERFPGIKDYMEATKAFARENGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 894

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI RRAMI +  +L +  LA +MLLQ+HDEL+FEVP+ E+     ++ H ME A +P
Sbjct: 895 SAADIIRRAMIRMEDALAEQNLAARMLLQVHDELIFEVPDNEVEKTIPVVRHIMENAAMP 954

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL V+ + ++NW E +
Sbjct: 955 AVSLAVPLHVDARAAHNWDEAH 976


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score = 1091 bits (2822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/982 (48%), Positives = 672/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ + L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDVDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   +  +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQPLS-APTAAGPDQGYTPKALAERRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 ATAQKIDTSAYVCIRDIATLEQWLAEATETGVLAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1]
          Length = 978

 Score = 1090 bits (2820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 674/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ + L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDVDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQPLS-APTAAEPDQGYTPKALAERRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 ATAQKIDTSAYVCIRDIATLEQWLAEAAETGVLAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF +SSPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTISSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
          Length = 998

 Score = 1090 bits (2819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/998 (49%), Positives = 681/998 (68%), Gaps = 22/998 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPVNA++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNE+Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRNELYDLYKANRSAPPEDLVPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTIIS+DKDLMQLV+    +YD +K+++I +  VI+KWG+ PE
Sbjct: 121 DDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVIEKWGVGPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRENI+  A
Sbjct: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRENIIANA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E ARLSR+LV LRTDVP+   LE L+LE  NGP+LI+FLKA+EFT L  RVA   D DA+
Sbjct: 241 ELARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEATDSDAS 300

Query: 298 NIEPVVLDINTTENKGI----AIETEIDRDTTIKTS--QFSSLSDQTSKINSEQTPQKLF 351
            I+P  + +    +       A    +  D + + +    S+++     I    TP  L 
Sbjct: 301 AIDPANVPVQWGADAHGPDLDAPAAAMAGDVSAEGNNRPASAVAPAKRMIGEGSTPADLT 360

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             R    +   I+  +YT I +   +  W+      G  +F   T ++D   ++ +  ++
Sbjct: 361 TARQALFAATKIDTTAYTAIRDIATLDLWIAAAREAGVVAFDTETTSLDPMQAELVGFSL 420

Query: 412 STLD-QKDDTSFKVETIFIDLSVHTSQDS---------TGKNTLTKEILSYLKKFFENEH 461
           +  D  KD +   +   ++ L+  T                     E L  LK   E+E 
Sbjct: 421 AIADNGKDASGTDIRAAYVPLTHKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLLEDEA 480

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518
            LK+  N+KYD L++ R+G+ MR F+D ML+SYVL++G+++H + +++++WL +T    K
Sbjct: 481 VLKVAQNLKYDYLLMKRHGVVMRSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYK 540

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           ++  S KSSI  D ++  +   +A E+++V L+LW+ L+P+L+ E+L  VYERL++P++ 
Sbjct: 541 DVTGSGKSSITFDFVNIDKATAYAAEDADVTLRLWMALKPRLVSERLTKVYERLERPLVP 600

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V++ ME  GI +D+ +L ++S E+++   S EE IY+L+GE+FN+ SPKQLGDILF ++ 
Sbjct: 601 VLAHMEERGITVDRQILSRLSGELAQKAASFEEEIYELAGERFNIGSPKQLGDILFGRMG 660

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P G+KTKTGQW T+AQ LE +      + + I++WRQL+K+KSTY D+LP++I+  T+R
Sbjct: 661 LPGGSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPETKR 720

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y+LAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KL+SADYSQIELR+L
Sbjct: 721 VHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVL 780

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A I  L   FEN +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA
Sbjct: 781 AHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLA 840

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I RSEA DYIK+YF RFPGI +Y+E TK F R+NGYVETIFGRR HY EI S   S
Sbjct: 841 NQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPS 900

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           ++  NERAAINAPIQGSAADI RRAMI +  +LE  KL+ +MLLQ+HDEL+FEV E EI 
Sbjct: 901 VKAFNERAAINAPIQGSAADIIRRAMIRIEPALEAEKLSARMLLQVHDELIFEVEEAEIE 960

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
               ++V  ME A +P I++RVPLKV+ + ++NW E +
Sbjct: 961 KTLPVVVSVMEDAAMPAISMRVPLKVDARAADNWDEAH 998


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score = 1090 bits (2819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/982 (48%), Positives = 672/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 435 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 492

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 493 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 552

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 553 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 612

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 613 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 672

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 673 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 732

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELRILAH+A I  L Q F + 
Sbjct: 733 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADG 792

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 793 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 852

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 853 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 912

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 913 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 972

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 973 AVSLAVPLRVDARAAHNWDEAH 994


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score = 1090 bits (2818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/982 (48%), Positives = 670/982 (68%), Gaps = 9/982 (0%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ +Q+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDVQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        +     +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAAASQLLSAPTAAEPDQGYTPKALAEGRAAQ 375

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 376 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 435

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 436 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 493

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 494 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 553

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 554 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 613

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 614 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 673

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 674 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 733

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 734 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 793

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 794 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 853

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 854 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 913

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 914 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 973

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 974 AVSLAVPLRVDARAAHNWDEAH 995


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score = 1090 bits (2818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 672/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 435 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 492

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 493 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 552

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 553 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 612

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 613 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 672

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 673 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 732

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 733 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 792

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 793 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 852

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 853 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 912

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 913 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 972

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 973 AVSLAVPLRVDARAAHNWDEAH 994


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score = 1090 bits (2818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 672/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDPSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 435 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 492

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 493 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 552

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 553 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 612

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 613 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 672

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 673 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 732

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 733 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 792

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 793 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 852

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 853 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 912

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 913 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 972

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 973 AVSLAVPLRVDARAAHNWDEAH 994


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score = 1090 bits (2818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 673/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 435 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 492

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 493 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 552

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 553 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 612

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 613 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 672

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+++ I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 673 QVLEDLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 732

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 733 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 792

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 793 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 852

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 853 YFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAINAPIQG 912

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 913 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 972

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 973 AVSLAVPLRVDARAAHNWDEAH 994


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score = 1089 bits (2817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/982 (48%), Positives = 673/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQPLS-APTAAEPDQGYTPKALAERRAVQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 ATAQKIDTSAYVCIRDIATLEQWLAEAAETGVLAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK   E+   LKI  N+KYD LV+ 
Sbjct: 435 --AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMR 492

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 493 RHGINAVSFDDTMLISYVLDAGTGSHGMNPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 552

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 553 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 612

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 613 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 672

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 673 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 732

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 733 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 792

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 793 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 852

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 853 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 912

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++ H ME A +P
Sbjct: 913 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMP 972

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 973 AVSLAVPLRVDARAAHNWDEAH 994


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score = 1089 bits (2816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/982 (48%), Positives = 671/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKA R   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKATRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 435 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 492

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 493 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 552

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 553 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 612

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 613 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 672

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 673 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 732

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 733 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 792

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 793 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 852

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 853 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 912

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 913 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 972

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 973 AVSLAVPLRVDARAAHNWDEAH 994


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score = 1088 bits (2815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/982 (48%), Positives = 672/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TD+P+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 257 DQTKIARELVTLKTDMPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 435 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 492

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 493 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 552

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 553 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 612

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 613 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 672

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 673 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 732

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 733 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 792

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 793 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 852

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 853 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 912

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 913 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 972

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 973 AVSLAVPLRVDARAAHNWDEAH 994


>gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score = 1088 bits (2814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/982 (48%), Positives = 672/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELRILAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1]
          Length = 978

 Score = 1088 bits (2814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 672/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDPSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
          Length = 978

 Score = 1088 bits (2814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 672/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score = 1088 bits (2814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/982 (48%), Positives = 671/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G   H +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGRHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
          Length = 979

 Score = 1088 bits (2813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/982 (48%), Positives = 670/982 (68%), Gaps = 9/982 (0%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ +Q+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDVQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        +     +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAAASQLLSAPTAAEPDQGYTPKALAEGRAAQ 359

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 360 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 419

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 420 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 477

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 478 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 537

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 538 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 597

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 598 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 657

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 658 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 717

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 718 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 777

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 778 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 837

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 838 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 897

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 898 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 957

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 958 AVSLAVPLRVDARAAHNWDEAH 979


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
           polymerase, family A:5'-3' exonuclease:3'-5'
           exonuclease:Hel [Brucella melitensis biovar Abortus
           2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
          Length = 978

 Score = 1088 bits (2813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 673/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+++ I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score = 1087 bits (2812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 671/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCYVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++ +   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLVQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13]
 gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score = 1087 bits (2812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/982 (48%), Positives = 673/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQPLS-APTAAEPDQGYTPKALAERRAVQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 ATAQKIDTSAYVCIRDIATLEQWLAEAAETGVLAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK   E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMNPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++ H ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 978

 Score = 1087 bits (2811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/982 (48%), Positives = 671/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKA R   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKATRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score = 1087 bits (2811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/982 (48%), Positives = 674/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +A ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMAPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+++ I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94]
          Length = 978

 Score = 1086 bits (2810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/982 (48%), Positives = 672/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TD+P+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDMPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
          Length = 978

 Score = 1086 bits (2810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 672/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTDSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score = 1086 bits (2809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/993 (49%), Positives = 672/993 (67%), Gaps = 18/993 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNM+WKLL  +R  S+   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPALTRKSDGLPVGAVSGFCNMMWKLLTEARDTSVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY + TFR ++YP+YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSSKTFRKDLYPEYKANRSAPPEDLVPQFGLIRQATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTI+S+DKDLMQLV+    +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDIIATYARAAEAIGADVTIVSSDKDLMQLVTANVHMYDSMKDKQIGIPDVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DNIPGIPGIG KTAA LL+EYG+L+ ++  AS IKQ KRRENIL  A
Sbjct: 181 KMIDLQSLTGDSTDNIPGIPGIGPKTAAQLLEEYGDLDTLMARASEIKQNKRRENILAGA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  +LSR+LV LRTDVP+ +PL+ L+LE  +GP+L++FLKA+EFT L  RVA   DCDA 
Sbjct: 241 ELVKLSRQLVTLRTDVPLDMPLDALMLEKQDGPKLVAFLKAMEFTSLTRRVADNCDCDAG 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            IEP  + +    +             T  + Q +  + Q++K     TP  L   R   
Sbjct: 301 AIEPATISVEWGASARGPDLDAGAAAQTPASGQEAGPTAQSAKAEG-ATPADLAAARQSA 359

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
               PI+  +Y  I +   ++ W+      G  +F   T ++D   +  + ++++  D  
Sbjct: 360 FGGQPIDRSAYVTIRDLPTLEGWIAAAREAGFVAFDTETTSLDPMQADLVGVSLALQDNA 419

Query: 418 DDTSFK-VETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIGHN 468
                  +   ++ L   T +D                   L+ LK   E+   LK+  N
Sbjct: 420 ASPGAATIRAAYVPLGHKTGRDDLFSDGLKLAENQIPMDAALTALKGLLEDASVLKVAQN 479

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRK 525
           +KYD LV+ R+GI +RGF+D ML+SYVL++G  +H + S++++WL +     KE+  S K
Sbjct: 480 LKYDYLVMKRHGIVIRGFDDTMLLSYVLEAGVGAHGMDSLSERWLGHTPIPYKEVAGSGK 539

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           S +  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P++ V++ ME 
Sbjct: 540 SLVTFDLVDIDKATAYAAEDADVTLRLWLVLKPRLAAVGLARVYERLERPLVPVLADMEE 599

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI ID+ +L ++S E+++   + E+ IY+L+GE+FN+ SPKQLGDILF ++  P G+KT
Sbjct: 600 RGITIDRQILSRLSGELAQKAAAFEDEIYELAGERFNVGSPKQLGDILFGRMNLPGGSKT 659

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTGQW T+AQ LE +     P+ + I++WRQL+K+KSTY D+LP +++ +T+RVHT YS+
Sbjct: 660 KTGQWSTSAQVLEDLAAQGEPLPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYSM 719

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A+T TGRL+S EPNLQNIP++T  G+KIR AFIS P  KL+SADYSQIELR+LAH+A I 
Sbjct: 720 AATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADIP 779

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L Q F + +DIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F LA QL I R
Sbjct: 780 QLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRAKAINFGIIYGISAFGLANQLSIER 839

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +EA +YIK+YF RFPGI +Y+E TK FVR++GYVETIFGRR HY EI S   S+R  NER
Sbjct: 840 AEAGEYIKKYFERFPGIKDYMESTKAFVREHGYVETIFGRRAHYPEIKSSNPSMRAFNER 899

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEITTASQI 943
           AAINAPIQGSAAD+ RRAM+ V  +L    L   T+MLLQ+HDEL+FEV +E I  A  +
Sbjct: 900 AAINAPIQGSAADVIRRAMVQVEPALAKAGLGEKTRMLLQVHDELIFEVEDEAIEAALPV 959

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           IV +ME A +P I +RVPLKV+ + ++NW E +
Sbjct: 960 IVSTMENAAMPAIAMRVPLKVDARAADNWDEAH 992


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
          Length = 985

 Score = 1086 bits (2808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/987 (48%), Positives = 669/987 (67%), Gaps = 13/987 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNE+YPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRNELYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  IA + G  VTI+S+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARIAAEAGGDVTIVSSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+ DVP+ + L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKNDVPLDVDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTS-----QFSSLSDQTSKINSEQTPQKLFL 352
           ++EP  ++     +   A     D D   K          + +   S   +  TP  L  
Sbjct: 301 SVEPSHVETGWGADASTADLHGPDMDIPPKADGEVTVVAVTATVTVSTTEAGYTPTALAD 360

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            R +      ++  +YT I +   ++ W+ +    G  +F   T ++D   ++ +  +++
Sbjct: 361 RRAEAARAQKVDTSAYTCIRDIATLKLWLAEAVETGLLAFDTETTSVDPMQAELVGFSLA 420

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               +   ++                +        E L+ LK   E+   LKI  N+KYD
Sbjct: 421 LAPGR--AAYIPLQHKSGAGDLLGGGTVEGQIPLGEALAALKTVLEDASVLKIAQNMKYD 478

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIP 529
            L++ RYGI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KSS+ 
Sbjct: 479 WLIMRRYGINTVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSSVT 538

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI 
Sbjct: 539 FDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIA 598

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D+ +L ++S ++++   + E+ IY+L+GE+F + SPKQLGDILF K+  P  +KTKTGQ
Sbjct: 599 VDRQVLSRLSGDLAQAAAAYEDEIYELAGERFTIGSPKQLGDILFGKMGLPGASKTKTGQ 658

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           W T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN  T+RVHT Y++AST 
Sbjct: 659 WSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPATRRVHTCYAMASTS 718

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q
Sbjct: 719 TGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQ 778

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA 
Sbjct: 779 AFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAG 838

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    IR  NERAAIN
Sbjct: 839 QYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQIRAFNERAAIN 898

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI RRAMI +  +L   KLA +MLLQ+HDEL+FEVPE E+     ++ H ME
Sbjct: 899 APIQGSAADIIRRAMIRMEDALAKEKLAARMLLQVHDELIFEVPENEVEKTVSVVRHVME 958

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A +P ++L VPL V+ + ++NW E +
Sbjct: 959 NAAMPAVSLAVPLHVDARAAHNWDEAH 985


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score = 1083 bits (2801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/982 (48%), Positives = 670/982 (68%), Gaps = 10/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EI PDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEINPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA+EFT L  RVA   D DA+
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  ++ +   +     + ++        SQ  S +   ++ +   TP+ L   R  +
Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+  +Y  I +   ++QW+ +    G  +F   T ++D    + +  +++    K
Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQGELVGFSLALAPGK 418

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                           L+ LK+  E+   LKI  N+KYD LV+ 
Sbjct: 419 --AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMR 476

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S KS++  D + 
Sbjct: 477 RHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAVTFDMVD 536

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME  GI +D+ +
Sbjct: 537 IDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQV 596

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +KTKTGQW T+A
Sbjct: 597 LSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSA 656

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y++AST TGRL+
Sbjct: 657 QVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLS 716

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 717 SSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADG 776

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  YI+ 
Sbjct: 777 IDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGQYIRT 836

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NERAAINAPIQG
Sbjct: 837 YFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAINAPIQG 896

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++   ME A +P
Sbjct: 897 AAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMP 956

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V+ + ++NW E +
Sbjct: 957 AVSLAVPLRVDARAAHNWDEAH 978


>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
 gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
          Length = 1040

 Score = 1082 bits (2799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/1004 (47%), Positives = 667/1004 (66%), Gaps = 28/1004 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
            M+  +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R  S+   
Sbjct: 37   MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 96

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +HFAVIFDY + TFRN +Y  YKANR   PE L+PQ  L+R AT+AF +P IE +G+EA
Sbjct: 97   PTHFAVIFDYSSKTFRNALYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 156

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +AE+ G  VTI+S+DKDLMQLV+P   +YD++K+++I I  VI+KWG+PPE
Sbjct: 157  DDLIATYARLAEEAGAGVTIVSSDKDLMQLVTPNVSMYDSMKDKQIAIPDVIEKWGVPPE 216

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRE I+  A
Sbjct: 217  KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLSRAGEIKQQKRREAIIANA 276

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            E ARLSR+LV L+ D P+ +PLE L L+  +GP+LI+FLK +EFT L  RVA   D DA 
Sbjct: 277  ELARLSRELVTLKKDTPLDVPLEDLRLDSQDGPKLIAFLKTMEFTTLTRRVAAATDTDAE 336

Query: 298  NIEPVVLDINTTENKG---------------IAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
             +EP  + +                       A  +          +  S L+ +     
Sbjct: 337  AVEPAPVPVEWGAAAHGPDLDVGEAAGPPPTPASSSAAPPRGNAAKAAVSFLTGKGDADA 396

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  TPQ L   R +  ++ P ++ +Y  I +   + +W+ +    G   F   T ++D  
Sbjct: 397  TGATPQGLAQARAEHFAKAPFDHSAYATIRDLATLDRWIAEAREAGLFGFDTETTSLDPM 456

Query: 403  HSKPIAIAISTLD-QKDDTSFKVETIFIDLSVH------TSQDSTGKNTLTKEILSYLKK 455
             +    ++++  D   D     +   ++ L                     +E LS LK 
Sbjct: 457  RADLCGVSLAIADYSNDPMGGTIRAAYVPLIHKNGVGDLLGGGLVENQVPMREALSRLKN 516

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+   LK+  N+KYD LV+ R+GI+M+ F+D MLMSYV+D+G   H + S++++WL +
Sbjct: 517  LLEDPSVLKVAQNLKYDYLVMKRHGIAMQSFDDTMLMSYVVDAGNGMHGMDSLSERWLGH 576

Query: 516  ---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
                 K+I  + K+S+  D +   +   +A E+++V L+LW +L+P+L  + L  VYERL
Sbjct: 577  TPIPYKDIAGTGKASVSFDFVDIDKATTYAAEDADVTLRLWHVLKPRLAAKGLTRVYERL 636

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P+I V++ ME  GI +D+ +L ++S E+++   +LE+ IY L+GE F + SPKQLGDI
Sbjct: 637  ERPLIAVLAHMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDI 696

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF K+  P G+KTKTGQW T+A  LE +    + + + I++WRQL+K+KSTY D+LP ++
Sbjct: 697  LFGKMGLPGGSKTKTGQWSTSASVLEDLAAVGHELPRKIVDWRQLTKLKSTYTDALPGYV 756

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            +  T+RVHT Y+LA+T TGRL+S EPNLQNIP++T  G++IR AFI+ P  KL+SADYSQ
Sbjct: 757  HPETKRVHTGYALAATTTGRLSSSEPNLQNIPVRTAEGRRIRTAFIATPGHKLVSADYSQ 816

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+LAH+A I  L Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGI
Sbjct: 817  IELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGI 876

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R++GYVETIFGRR HY +I
Sbjct: 877  SAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFAREHGYVETIFGRRAHYPDI 936

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             S   S+R  NERA+INAPIQGSAADI RRAM+ +  +L++ KLA +MLLQ+HDEL+FEV
Sbjct: 937  RSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALDEAKLAARMLLQVHDELIFEV 996

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             E EI     +IV  ME A +P +++RVPLKV+ + + NW E +
Sbjct: 997  EEGEIERTLPVIVSVMENAAMPALDMRVPLKVDARAAQNWDEAH 1040


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score = 1080 bits (2794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 490/1000 (49%), Positives = 669/1000 (66%), Gaps = 24/1000 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
            M+K +HLFLVDGS FI+RAF+A P L+RK DG+PV A++GFCNMLWKLL ++R  S+   
Sbjct: 1    MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGVPVGAVSGFCNMLWKLLTSARDTSVGVT 60

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +HFAVIFDY + TFR +IY  YKANR   PE L+PQ  L+R AT+AF +P IE  GFEA
Sbjct: 61   PTHFAVIFDYSSKTFRKDIYDAYKANRSAPPEELIPQFGLIRQATRAFNLPCIETDGFEA 120

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DDIIATY   AE  G  VTIIS+DKDLMQLV+P   +YD++K+++I I  VI+KWG+PPE
Sbjct: 121  DDIIATYARQAEATGADVTIISSDKDLMQLVTPMVHMYDSMKDKQIGIPDVIEKWGVPPE 180

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQALTGDS+DN+PGIPGIG KTAA LL+ +G+L+ +L  A  IKQ+KRRENI+  A
Sbjct: 181  KMIDLQALTGDSVDNVPGIPGIGPKTAAQLLETFGDLDTLLARAGEIKQEKRRENIIANA 240

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + AR+SR+LV LRTDVP+ +PL+ L+LE  NGP+L+ FLKA+EFT L  RVA   +CD  
Sbjct: 241  DLARISRQLVTLRTDVPLELPLDALVLEPQNGPKLVGFLKAMEFTSLTRRVAEACNCDPT 300

Query: 298  NIEPVVLDINTTENKG-----IAIETEIDRDTTIKTSQFSSLSDQTSK---INSEQTPQK 349
             IEP  +++   +        +    E+    T+     S  +        +     P  
Sbjct: 301  AIEPSDVNVEWGDTAHGPDLDVGDNVELVAGGTVAAEGASVPAPAVKPRVGVEGLTEPAD 360

Query: 350  LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
            L   R    +  PI++  Y  I +   + +W+      G  +F   T ++D   ++ +  
Sbjct: 361  LTKARAASFATAPIDHSKYVTIRDVGTLDRWIADARETGIVAFDTETTSLDVMQAEIVGF 420

Query: 410  AISTLDQKDDTSFK-VETIFIDLSVH------TSQDSTGKNTLTKEILSYLKKFFENEHF 462
            +++  D K+D S   +   ++ L+                    ++ L  LK   E+   
Sbjct: 421  SLAIADNKNDPSGASIRAAYVPLNHKNGVGDLLGGGLADNQIPLRDALPRLKALLEDTSV 480

Query: 463  LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYT---RK 518
            LKI  N+KYD L++ RYGI  +GF+D ML+SYVLD G + +H + S++++WL +     K
Sbjct: 481  LKIAQNLKYDYLLMKRYGIETKGFDDTMLLSYVLDGGANATHGMDSLSERWLGHKPIAYK 540

Query: 519  EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
            ++  S KS+I  D +   +   +A E+++V L+LWL+L+P+L  EKL  VYERL++P++ 
Sbjct: 541  DVAGSGKSNITFDLVDIDRATAYAAEDADVTLRLWLVLKPRLAAEKLATVYERLERPLVP 600

Query: 579  VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
            V++ ME  GI ID+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K+ 
Sbjct: 601  VLAHMEERGITIDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMG 660

Query: 639  FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
               G+KTKTGQW T+AQ LE +      + + I++WRQL+K+KSTY D+LP +++  T+R
Sbjct: 661  LAGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKR 720

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            VHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+L
Sbjct: 721  VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 780

Query: 759  AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
            AH+A I  L Q F + +DIH M A+E+FGV IE +  ++RR AK INF IIYGIS F LA
Sbjct: 781  AHVANIPQLEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAFGLA 840

Query: 819  TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             QL I RSEA DYIKRYF RFPGI +Y+E TK   R  GYVETIFGRR+H+ EI S   S
Sbjct: 841  NQLSIERSEAGDYIKRYFERFPGIRDYMESTKATARDKGYVETIFGRRVHFPEIRSSNPS 900

Query: 879  IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936
            +R  NERA+INAPIQGSAAD+ RRAMI +  +L D  L    +MLLQ+HDEL+FEV + +
Sbjct: 901  VRAFNERASINAPIQGSAADVIRRAMIKMEPALADAGLGDRVRMLLQVHDELIFEVEDAD 960

Query: 937  ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +  ++ +IV  ME A +P +N+ VPLKV+ + +NNW E +
Sbjct: 961  VERSTPVIVSVMENAAMPAVNMSVPLKVDARAANNWDEAH 1000


>gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1]
 gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
          Length = 978

 Score = 1074 bits (2778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/989 (47%), Positives = 672/989 (67%), Gaps = 24/989 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV+A+ GFCNM+WKLL+++R  ++   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLNRKSDGLPVSAVLGFCNMVWKLLRDARDTAVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR++IYP+YKANR + PE L+PQ  L+R AT+AF +P IE++G+EA
Sbjct: 61  PTHFAVIFDYSSKTFRSKIYPEYKANRTEPPEDLIPQFGLIREATRAFDLPCIEMEGYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +  + G   TIIS+DKDLMQLV PT  +YD +K+++I +  V++KWG+PPE
Sbjct: 121 DDLIATYARLVCEAGGDTTIISSDKDLMQLVGPTVSMYDPMKDKEIRVPEVVEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQALTGD+IDN+PG+PGIG KTAA LL+EYG+L+ +L  A  IKQ+KRREN++E+A
Sbjct: 181 KMIDLQALTGDTIDNVPGVPGIGPKTAAQLLEEYGDLDTLLSRAHEIKQQKRRENLIEFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E AR+SR+LV L+ DV + +PL+ L L   +GP+LI+FLKA+EF+ L  RVA     DAA
Sbjct: 241 EKARISRELVRLKNDVTVEMPLDALALNPPDGPKLIAFLKAMEFSTLTRRVAEATGADAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++EP  +++   +    A   ++    T      +       + +  +TP+KL  +    
Sbjct: 301 DVEPAYIEV---QKGAEAHGPDLTVPATGIGEPGAEGEVAPERDDGAETPEKLARKLADA 357

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S    ++  Y  I + + + QWV +    G  +    T ++D   ++   IA++T   +
Sbjct: 358 ASHEAFDHSRYVCIRDLETLNQWVAEARETGVVALDTETTSLDPMQAELCGIALATAPNR 417

Query: 418 DDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                     ++ LS     +              +E L+ L+   ++   LKIG N+KY
Sbjct: 418 --------AAYLPLSHKNGAEDLLGGGMVDGQIRVEEALAVLRPLLQDPSVLKIGQNLKY 469

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D ++L+R+GI +  ++D ML+SYVL++G  +H + ++A++WL +T    KE+  S +S +
Sbjct: 470 DWVLLYRHGIEIAPYDDTMLISYVLEAGTQAHGMDALAERWLGHTPVSYKEVTGSGRSKV 529

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D +   +   +A E+++V L+LW +L+P+L  + L+ VYERL++PM+ V+ +ME  GI
Sbjct: 530 TFDMVGLERATVYASEDADVTLRLWKVLKPQLAAKGLVSVYERLERPMVSVICRMEHRGI 589

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S + ++   ++EE IY L+G +F + SPKQLGDILF ++  P GAKTK+G
Sbjct: 590 MVDRQILSRMSGDFAQTAAAMEEEIYRLAGGRFTIGSPKQLGDILFGRMGLPGGAKTKSG 649

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE++    + + + I++WRQ++K+KSTY D+LP +I+  T RVHT YSLAST
Sbjct: 650 QWSTSAQVLEELAAAGHELPRKIVDWRQVTKLKSTYTDALPGYIHPETGRVHTSYSLAST 709

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I  L 
Sbjct: 710 TTGRLSSSEPNLQNIPVRTPEGRKIRTAFIAAPGYKLISADYSQIELRVLAHVADIPELK 769

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F   +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 770 KAFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIPRDEA 829

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YIKRYF RFPGI +Y+E+TK F R+ GYVETIFGRR HY EI S   S+R  NERA+I
Sbjct: 830 GAYIKRYFERFPGIRDYMERTKAFCREKGYVETIFGRRAHYPEIRSSNPSVRAFNERASI 889

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAPIQGSAADI RRAM+ +  +L D  L   KMLLQ+HDELVFE PE+ I  A  +I   
Sbjct: 890 NAPIQGSAADIIRRAMMRMEAALADSGLVDVKMLLQVHDELVFEAPEDAIERAIPVIRTV 949

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A  P  +L VPLKV+ + ++NW+E +
Sbjct: 950 MEGAAWPARSLSVPLKVDARAADNWEEAH 978


>gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
          Length = 1004

 Score = 1071 bits (2771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/1004 (47%), Positives = 667/1004 (66%), Gaps = 28/1004 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
            M+  +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R  S+   
Sbjct: 1    MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY + TFRN +Y  YKANR   PE L+PQ  L+R AT+AF +P IE +G+EA
Sbjct: 61   PTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +AE+ G  VTI+S+DKDLMQLV+P   +YD++K+++I +  VI+KWG+PPE
Sbjct: 121  DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRE+I+  A
Sbjct: 181  KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR+LV L+ D P+ +P E   L+  +GP+LI+FLKA+EFT L  RVA   D DA 
Sbjct: 241  DLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300

Query: 298  NIEPVVLDINTTENKG---------------IAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
             IEP  + +                          +          +  S LS       
Sbjct: 301  AIEPAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADT 360

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  TP  L   R     + P ++  Y  I +   +++W+      G   F     + DA 
Sbjct: 361  TGATPTGLAEARAAYFGKAPFDHSGYRTIRDIDTLERWIADAREAGLVGFDTQATSPDAM 420

Query: 403  HSKPIAIAISTLDQKDDTSF-KVETIFIDLSVHTS------QDSTGKNTLTKEILSYLKK 455
             +  +  +++  D  +D S  ++   ++ L+  +                 +E LS LK+
Sbjct: 421  RADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVRETLSRLKE 480

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+   LK+G N+KY  LV+ R+GI+MR F+D MLMSYVLD+G  +H + S+A++WL +
Sbjct: 481  LLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFDDTMLMSYVLDAGNGAHGMDSLAERWLGH 540

Query: 516  T---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            T    K++  + +SS+  D +   +   +A E++++ L+LW +L+P+L  + L  VYERL
Sbjct: 541  TPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTRVYERL 600

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P+I V++ ME  GI +D+ +L ++S E+++   +LE+ IY L+GE F + SPKQLGDI
Sbjct: 601  ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDI 660

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF K+  P G+KTKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  +
Sbjct: 661  LFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFV 720

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            +  T+RVHT +++A+T TGRL+S +PNLQNIPI+T  G+KIR AF++ P  KL+SADYSQ
Sbjct: 721  HPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQ 780

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+LAH+A I  L Q F + +DIH M A+E+FGV ++ +  ++RR AK INF IIYGI
Sbjct: 781  IELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYGI 840

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY +I
Sbjct: 841  SAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPDI 900

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             S   S+R  NERA+INAPIQGSAADI RRAM+ +  +LE  KL+ +MLLQ+HDEL+FEV
Sbjct: 901  RSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEV 960

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             + EI     +I+  ME A +P +++RVPLKV+ + ++NW E +
Sbjct: 961  EDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score = 1071 bits (2770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/1004 (47%), Positives = 667/1004 (66%), Gaps = 28/1004 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
            M+  +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R  S+   
Sbjct: 1    MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY + TFRN +Y  YKANR   PE L+PQ  L+R AT+AF +P IE +G+EA
Sbjct: 61   PTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +AE+ G  VTI+S+DKDLMQLV+P   +YD++K+++I +  VI+KWG+PPE
Sbjct: 121  DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRE+I+  A
Sbjct: 181  KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR+LV L+ D P+ +P E   L+  +GP+LI+FLKA+EFT L  RVA   D DA 
Sbjct: 241  DLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300

Query: 298  NIEPVVLDINTTENKG---------------IAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
             IEP  + +                          +          +  S LS       
Sbjct: 301  AIEPAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADT 360

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  TP  L   R     + P ++  Y  I +   +++W+      G   F     + DA 
Sbjct: 361  TGATPTGLAEARAAYFGKAPFDHSGYRTIRDIDTLERWIADAREAGLVGFDTQATSPDAM 420

Query: 403  HSKPIAIAISTLDQKDDTSF-KVETIFIDLSVHTS------QDSTGKNTLTKEILSYLKK 455
             +  +  +++  D  +D S  ++   ++ L+  +                 +E LS LK+
Sbjct: 421  RADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPGRETLSRLKE 480

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+   LK+G N+KY  LV+ R+GI+MR F+D MLMSYVLD+G  +H + S+A++WL +
Sbjct: 481  LLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFDDTMLMSYVLDAGNGAHGMDSLAERWLGH 540

Query: 516  T---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            T    K++  + +SS+  D +   +   +A E++++ L+LW +L+P+L  + L  VYERL
Sbjct: 541  TPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTRVYERL 600

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P+I V++ ME  GI +D+ +L ++S E+++   +LE+ IY L+GE F + SPKQLGDI
Sbjct: 601  ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDI 660

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF K+  P G+KTKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  +
Sbjct: 661  LFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFV 720

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            +  T+RVHT +++A+T TGRL+S +PNLQNIPI+T  G+KIR AF++ P  KL+SADYSQ
Sbjct: 721  HPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQ 780

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+LAH+A I  L Q F + +DIH M A+E+FGV ++ +  ++RR AK INF IIYGI
Sbjct: 781  IELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYGI 840

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY +I
Sbjct: 841  SAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPDI 900

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             S   S+R  NERA+INAPIQGSAADI RRAM+ +  +LE  KL+ +MLLQ+HDEL+FEV
Sbjct: 901  RSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEV 960

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             + EI     +I+  ME A +P +++RVPLKV+ + ++NW E +
Sbjct: 961  EDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004


>gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419]
 gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419]
          Length = 1004

 Score = 1070 bits (2767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/1004 (48%), Positives = 674/1004 (67%), Gaps = 28/1004 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
            M+  +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R  S+   
Sbjct: 1    MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +HFAVIFDY + TFRN +Y  YKANR   PE L+PQ  L+R AT+AF +P IE +G+EA
Sbjct: 61   PTHFAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +AE+ G  VTI+S+DKDLMQLV+P   +YD++K+++I +  VI+KWG+PPE
Sbjct: 121  DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRE+I+  A
Sbjct: 181  KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              ARLSR+LV L+ D P+ +PL+  +L+  +GP+LI+FLKA+EFT L  RVA   D DA 
Sbjct: 241  NLARLSRELVTLKKDTPLDVPLDDFMLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300

Query: 298  NIEPVVLDINT-TENKGIAIET--------------EIDRDTTIKTSQFSSLSDQTSKIN 342
            +IEP  + +   TE +G  ++                         +  S LS       
Sbjct: 301  SIEPAHVPVEWGTEARGPDLDVGEAGGPPPSPQSSSAAPPRGNAARAAVSFLSPGQDADA 360

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  TP  L   R    +  P ++ +Y  I +   +++W+      G   F     + DA 
Sbjct: 361  TGATPADLAEARAAYFASAPFDHSAYITIRDLASLERWIADAREAGLVGFGTQATSSDAM 420

Query: 403  HSKPIAIAISTLDQKDDTSF-KVETIFIDLSVH------TSQDSTGKNTLTKEILSYLKK 455
             +  +  +++  D  +D S  ++   ++ L+                    +E LS LK+
Sbjct: 421  RADLVGFSLAIADYANDPSGSRIRAAYVPLAHKNGTGDLLGGGHIDNQIPAREALSRLKE 480

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+   LK+  N+KY  LV+ R+G++M+GF+D ML+SYVLD+G  +H + S+A++WL +
Sbjct: 481  LLEDPSILKVAQNLKYGYLVMKRHGVTMQGFDDTMLISYVLDAGNGAHGMESLAERWLGH 540

Query: 516  TR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            T    K I  S +SS+ ID +   +   ++ E++++ L+LW +L+P+L    L  VYERL
Sbjct: 541  TPIASKGITGSGRSSLTIDFVDIDKAAAYSAEDADIALRLWHVLKPRLTARGLTRVYERL 600

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P+I V++ ME  GI +D+ +L ++S E+++   +LE+ IY L+GE F + SPKQLGDI
Sbjct: 601  ERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDI 660

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF KL  P G+KTKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  +
Sbjct: 661  LFGKLGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFV 720

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            +  T+RVHT ++LA+T TGRL+S +PNLQNIPI+T  G+KIR AF++ P  KL+SADYSQ
Sbjct: 721  HPETKRVHTCFALAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQ 780

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+LAH+A I  L Q F + +DIH M A+E+FGV ++ +  ++RR AK INF IIYGI
Sbjct: 781  IELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINFGIIYGI 840

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY +I
Sbjct: 841  SAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKTFARENGYVETIFGRRAHYPDI 900

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             S   S+R  NERA+INAPIQGSAADI RRAM+ +  +LE  KL+ +MLLQ+HDEL+FEV
Sbjct: 901  RSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEV 960

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             E EI     +IV  ME A +P +++RVPLKV+ + ++NW E +
Sbjct: 961  EEGEIERTIPVIVSVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004


>gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
 gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
          Length = 997

 Score = 1069 bits (2765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/983 (46%), Positives = 660/983 (67%), Gaps = 9/983 (0%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+Q++R   +   
Sbjct: 17  MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLMQDARNTDVGIV 76

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRN++YP+YKANR   PE L+PQ  L+R AT+AF +P IE++GFEA
Sbjct: 77  PTHFAVIFDYSSKTFRNDLYPEYKANRSAPPEDLIPQFGLIRQATRAFNLPCIEMEGFEA 136

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV  T  +YD +K+ +I I  VI+KWG+PPE
Sbjct: 137 DDLIATYCRLACEAGGDTTIISSDKDLMQLVGDTVAMYDPMKDRQIGIPEVIEKWGVPPE 196

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV LQALTGDS+DN+PG+PGIG KTAA LL+++G+L+ +L  A  IKQ KRRE+I+   
Sbjct: 197 KMVDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDGLLARAGEIKQDKRRESIIANT 256

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+SR+LV L+ DVP+   L+  +L   +GP+LI FLK +EFT L  RVA     +A 
Sbjct: 257 DKARISRQLVTLKNDVPVAEGLDDFVLHAPDGPKLIGFLKTMEFTSLTRRVAEATSTEAG 316

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++  V + +   ++                 ++ S  +  T       TP  L   RL++
Sbjct: 317 DVPAVAVTVERADSAHGPDVGAGAPVMARNGAEPSQANGTTQTPKQGDTPSLLAALRLER 376

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+  +Y  I +   ++ WV +    G A+F +     D   ++ I +A++T   +
Sbjct: 377 AATRKIDISAYQCIRDIATLKAWVAEAREAGIAAFDVRATAADPMQAELIGMAMATAPGR 436

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                +       +E L+ LK   E++  LKI  N+KYD +++ 
Sbjct: 437 --AAYIPFAHKSGNGDLLGGGTLENQIPLREALAVLKPLLEDKSVLKIAQNLKYDLVIMS 494

Query: 478 RYGISMRGFEDIMLMSYVLDSGR-SSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           RYGI +  F+D ML+SYVLD+G    H + ++A KWL +     K+++ S K+S+  D++
Sbjct: 495 RYGIDVAPFDDTMLISYVLDAGTPHGHGMDALADKWLGHTPLQLKDVIGSGKNSVGFDQV 554

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +   HA E+++V L+LWL+L+P+L    L+ VYERL++P++ V+++ME  GI +D+ 
Sbjct: 555 DIDKATAHAAEDADVTLRLWLVLKPRLAATGLVSVYERLERPLVSVLARMEQRGISVDRQ 614

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L ++S E+++    LEE IY L GE+ N+ SPKQLGDILF ++  P G+KTKTGQW T+
Sbjct: 615 ILSRLSGELAQGAARLEEEIYQLVGERINIGSPKQLGDILFGRMGLPGGSKTKTGQWSTS 674

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           AQ LE +    + + + I++WRQL+K+KSTY D+LP  I+  T+RVHT Y+LA+T TGRL
Sbjct: 675 AQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFIHPETKRVHTSYALAATTTGRL 734

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++T  G+KIR AFI+    +L+SADYSQIELR+LAH+A+I  L Q F +
Sbjct: 735 SSSDPNLQNIPVRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFAD 794

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH + A+E+F V +E +  ++RR AK INF IIYGIS F LA QL IPR EA++YIK
Sbjct: 795 GADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEASNYIK 854

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF RFPGI +YIE+TK + R++G+VETIFGRRIHY +I S   SIR  NERA+INA +Q
Sbjct: 855 KYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSIRAFNERASINARLQ 914

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI RRAM+ + ++LE  KL+ +MLLQ+HDEL+FE  + E+     I+ H ME A +
Sbjct: 915 GTAADIIRRAMVRMDEALEKAKLSARMLLQVHDELIFETVDAEVEATIPIVRHVMENAAM 974

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
           P +++ VPL V+ + +NNW E +
Sbjct: 975 PAVSMSVPLHVDARAANNWDEAH 997


>gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83]
          Length = 1004

 Score = 1068 bits (2763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/1004 (47%), Positives = 666/1004 (66%), Gaps = 28/1004 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
            M+  +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R  S+   
Sbjct: 1    MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY + TFRN +Y  YKANR   PE L+PQ  L+R AT+AF +P IE +G+EA
Sbjct: 61   PTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +AE+ G  VTI+S+DKDLMQLV+P   +YD++K+++I +  VI+KWG+PPE
Sbjct: 121  DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L  A  IKQ+KRRE+I+  A
Sbjct: 181  KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR+LV L+ D P+ +P E   L+  +GP+LI+FLKA+EFT L  RVA   D DA 
Sbjct: 241  DLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300

Query: 298  NIEPVVLDINTTENKG---------------IAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
             IEP  + +                          +          +  S LS       
Sbjct: 301  AIEPAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADT 360

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
            +  TP  L   R     + P ++     I +   +++W+      G   F     + DA 
Sbjct: 361  TGATPTGLAEARAAYFGKAPFDHSGCRTIRDIDTLERWIADAREAGLVGFDTQATSPDAM 420

Query: 403  HSKPIAIAISTLDQKDDTSF-KVETIFIDLSVHTS------QDSTGKNTLTKEILSYLKK 455
             +  +  +++  D  +D S  ++   ++ L+  +                 +E LS LK+
Sbjct: 421  RADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVREALSRLKE 480

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+   LK+G N+KY  LV+ R+GI+MR F+D MLMSYVLD+G  +H + S+A++WL +
Sbjct: 481  LLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFDDTMLMSYVLDAGNGAHGMDSLAERWLGH 540

Query: 516  T---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            T    K++  + +SS+  D +   +   +A E++++ L+LW +L+P+L  + L  VYERL
Sbjct: 541  TPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTRVYERL 600

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P+I V++ ME  GI +D+ +L ++S E+++   +LE+ IY L+GE F + SPKQLGDI
Sbjct: 601  ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDI 660

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF K+  P G+KTKTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  +
Sbjct: 661  LFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFV 720

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            +  T+RVHT +++A+T TGRL+S +PNLQNIPI+T  G+KIR AF++ P  KL+SADYSQ
Sbjct: 721  HPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQ 780

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+LAH+A I  L Q F + +DIH M A+E+FGV ++ +  ++RR AK INF IIYGI
Sbjct: 781  IELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYGI 840

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY +I
Sbjct: 841  SAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPDI 900

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             S   S+R  NERA+INAPIQGSAADI RRAM+ +  +LE  KL+ +MLLQ+HDEL+FEV
Sbjct: 901  RSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEV 960

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             + EI     +I+  ME A +P +++RVPLKV+ + ++NW E +
Sbjct: 961  EDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score = 1068 bits (2761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/982 (46%), Positives = 644/982 (65%), Gaps = 8/982 (0%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN-SRKES--I 57
            +  ++HL LVDGS+FI+RA++A P L+RK DGLPV A++GFCNMLWKLLQ     E    
Sbjct: 22   LTADDHLILVDGSTFIFRAYHALPPLTRKPDGLPVGAVSGFCNMLWKLLQEGLTPEEGDE 81

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +HFAVIFD+ A TFR+EIYP+YKA RP  PE L+PQ  L+R AT+AF    IE +GFEA
Sbjct: 82   PTHFAVIFDHSAQTFRSEIYPEYKAQRPPPPEDLVPQFGLIREATRAFSTHCIEQEGFEA 141

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY   A ++G  VTI+S DKDLMQL+ P   + DT+K +      V +K+G+ P+
Sbjct: 142  DDLIATYARQAAEQGARVTIVSGDKDLMQLIGPKIGMIDTMKNKTFGEPEVFEKFGVGPD 201

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            K++ +Q+L GDS+DN+PG+PGIG KTAALL+ E+ +LE +L  A+ IKQKKRREN++E+A
Sbjct: 202  KVIEVQSLAGDSVDNVPGVPGIGLKTAALLINEFSDLETLLAQAATIKQKKRRENLIEFA 261

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + AR+S++LV L+ DVP+ IP+  L + + +GP+ + FLKA+ FT L  RVA T   D A
Sbjct: 262  DQARISKELVTLKQDVPVVIPVGDLSVCEIDGPKAVGFLKAMGFTTLTKRVAETTGADVA 321

Query: 298  NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            N+E   L++   +         +DR   +      + S  +   +    PQ +  ER  +
Sbjct: 322  NVEATDLEVPGWDVPD-HKGRMMDRPGGMAAPDADNNSGDSPAPDGLMVPQTVADERAAR 380

Query: 358  LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   P+++ +Y  +   + +Q W+      G  +F   T ++DA  ++ + I++S    K
Sbjct: 381  IGAIPVDSSAYETVTTLEQLQPWIDAAYEKGYVAFDTETTSLDAMQAELVGISLSCKPGK 440

Query: 418  DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +     +  +              + L  LK   E+   LKI  N+KYD LV+ 
Sbjct: 441  -ACYIPLTHKDGEGDLLGGGGLLPDQIPLDDALKALKPMLEDRGILKIAQNLKYDWLVMT 499

Query: 478  RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
            R+G+ +  ++D ML+SY +D+G+  + +  ++++WL +     KE+  S KS I  DK++
Sbjct: 500  RHGVDVDPYDDTMLLSYTVDAGKGGNGMDELSERWLGHKPIPFKEVCGSGKSMITFDKVA 559

Query: 535  DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              +   +A E+++V L+LWL L+P+L  + +  VYE L++PM+ V+++ME  GI +D+ +
Sbjct: 560  IDKATAYAAEDADVTLRLWLTLKPRLASDHMATVYETLERPMVPVLARMEKRGISVDRQM 619

Query: 595  LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
            L ++S + ++   +LE  IY+L+GE FN+ SPKQLGDILF K+  P G KTKTG W T+A
Sbjct: 620  LSRLSGDFAQGAAALESEIYELAGETFNVGSPKQLGDILFGKMGLPGGKKTKTGAWSTSA 679

Query: 655  QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            Q LE +    +P+   I+EWRQLSK+KSTY D+LP +IN  T+RVHT YSLA+T TGRL+
Sbjct: 680  QVLEDLAAEGHPLPSKIVEWRQLSKLKSTYTDALPGYINPETKRVHTSYSLAATTTGRLS 739

Query: 715  SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            S EPNLQNIP++T+ G+KIR+AFI+   +KLISADYSQIELR+LAH+A I  L + FE+ 
Sbjct: 740  SSEPNLQNIPVRTEAGRKIRQAFIAEKGQKLISADYSQIELRVLAHMADIPQLKKAFEDG 799

Query: 775  LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            LDIH M A+E+FG  IE + P +RR AK INF IIYGIS F LA QL I R EA DYIK 
Sbjct: 800  LDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAFGLANQLGISRGEAGDYIKT 859

Query: 835  YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
            YF RFPGI +Y+E  K  V  +GYV TIFGR+ HY E+N+   ++R   ERAAINAPIQG
Sbjct: 860  YFQRFPGIKDYMEAVKKQVHADGYVTTIFGRKAHYPEVNTKNPNMRAFYERAAINAPIQG 919

Query: 895  SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
            SAADI RRAM+ +   L   KL  +MLLQ+HDEL+FEVPE+++     +I   ME AC P
Sbjct: 920  SAADILRRAMVRMEDRLTASKLDAQMLLQVHDELIFEVPEDQVEATIPLIKDVMENACDP 979

Query: 955  KINLRVPLKVNIKVSNNWQEEN 976
             +   VPL+V+ + ++NW E +
Sbjct: 980  ALKFSVPLQVDARAADNWDEAH 1001


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score = 1068 bits (2761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/985 (46%), Positives = 647/985 (65%), Gaps = 11/985 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN-SRKES--I 57
           +  ++HL LVDGS+FI+RA++A P L+RK DGLPV A++GFCNMLWKLLQ     E    
Sbjct: 14  LTADDHLILVDGSTFIFRAYHALPPLTRKPDGLPVGAVSGFCNMLWKLLQEGLTPEEGDE 73

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ A TFRNEIYP+YKA+RP  PE L+PQ  L+R AT+AF +  IE +GFEA
Sbjct: 74  PTHFAVIFDHSAQTFRNEIYPEYKAHRPDPPEDLVPQFGLIREATRAFSVHCIEQEGFEA 133

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   A ++G  VTI+S DKDLMQL+ P   + DT+K +      V +K+G+ P+
Sbjct: 134 DDLIATYAREAAEQGARVTIVSGDKDLMQLIGPKVGMIDTMKNKTFGEAEVFEKFGVGPD 193

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ +Q+L GDS+DN+PG+PGIG KTAALL+ E+G+LE +L  A  IKQ KRREN++E+A
Sbjct: 194 KVIEVQSLAGDSVDNVPGVPGIGLKTAALLINEFGDLETLLAKADTIKQNKRRENLIEFA 253

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+SR+LV L+ DVP+ +P+  L +   +GP+ + FLKA+ FT L  RVA     D  
Sbjct: 254 DQARISRQLVTLKQDVPVEVPVGELSVTGIDGPKALGFLKAMGFTTLTRRVADVTGADMD 313

Query: 298 NIEPVVLDI---NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            ++   L +   +  ++KG  +E     D+    ++  S  D     +    PQ +   R
Sbjct: 314 AVDAADLKVPGWDVPDHKGRIMERPGGGDSVAAEAE-KSPDDADPDTSGLLVPQTVADAR 372

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            Q +   P+++ +Y  + + + +++W       G  SF   T ++DA  ++ + +++ST 
Sbjct: 373 AQSIRAIPVDSSAYETVTSLERLKEWCDAAFEKGYVSFDTETTSLDAMQAELVGVSLSTE 432

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K      +  +  +  +             K+ L  LK   E+   LKI  N+KYD L
Sbjct: 433 PGK-ACYVPLGHVDGEGDLLGGGGLVEGQIPLKDALDVLKPMLEDRSVLKIAQNLKYDWL 491

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           V+ RYGI +  F+D ML+SY +D+G+  + +  ++++WL +     KEI  S KS I  D
Sbjct: 492 VMTRYGIDITPFDDTMLLSYTVDAGKGGNGMDELSERWLDHKPIPFKEICGSGKSMITFD 551

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K++  +   +A E+++V L+LWL+L+P+L  E++  VYE L++PM+ V+++ME  GI +D
Sbjct: 552 KVAIDKATAYAAEDADVTLRLWLILKPRLASERMATVYETLERPMVPVLARMEKRGISVD 611

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           + +L ++S E ++ +   E  IY+L+GE FN+ SPKQLGDILF K+  P G KTKTG W 
Sbjct: 612 RQMLSRLSGEFAQGMAGKESEIYELAGENFNIGSPKQLGDILFGKMGLPGGKKTKTGAWS 671

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+AQ LE +    + +   I+ WRQLSK+KSTY D+LP +IN  T RVHT Y+LA+T TG
Sbjct: 672 TSAQVLEDLAAEGHELPSRIVSWRQLSKLKSTYTDALPGYINPETGRVHTSYALAATTTG 731

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIP++T+ G+KIR+AFI+    KLISADYSQIELR+LAH+A I  L + F
Sbjct: 732 RLSSSEPNLQNIPVRTEEGRKIRKAFIAEKGHKLISADYSQIELRVLAHMADIPQLKKAF 791

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++ LDIH M A+E+FG  IE + P +RR AK INF IIYGIS F LA QL I R EA DY
Sbjct: 792 DDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINFGIIYGISAFGLANQLGISRGEAGDY 851

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           IK YF RFPGI +Y+E  K  V  NGYV TIFGR+ HY E+N+   ++R   ERAAINAP
Sbjct: 852 IKTYFERFPGIKDYMEAIKKQVHANGYVTTIFGRKAHYPEVNTKNPNMRAFYERAAINAP 911

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI RRAM+ +   LE  KL  +MLLQ+HDEL+FEVP+ ++ T   +I   ME A
Sbjct: 912 IQGSAADILRRAMVRMENRLEGSKLDAQMLLQVHDELIFEVPDAQVETTIPVIKDVMENA 971

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
           C P + L VPL+V+ + +NNW E +
Sbjct: 972 CDPALKLSVPLQVDARAANNWDEAH 996


>gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
 gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
          Length = 1003

 Score = 1067 bits (2760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/990 (46%), Positives = 663/990 (66%), Gaps = 17/990 (1%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
            M+K +HLFL+DGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+Q++R   +   
Sbjct: 17   MKKGDHLFLIDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLMQDARNTDVGIV 76

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +HFAVIFDY + TFRN++YP+YKANR   PE L+PQ  L+R AT+AF +P IE++GFEA
Sbjct: 77   PTHFAVIFDYSSKTFRNDLYPEYKANRSAPPEDLIPQFGLIRQATKAFNLPCIEMEGFEA 136

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DD+IATY  +A + G   TIIS+DKDLMQLV  T  +YD +K+ +I I  VI+KWG+PPE
Sbjct: 137  DDLIATYCRLAREAGGDTTIISSDKDLMQLVGDTVGMYDPMKDRQIGIPEVIEKWGVPPE 196

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KMV LQALTGDS+DN+PG+PGIG KTAA LL+++G+L+ +L  A  IKQ KRRE+I+   
Sbjct: 197  KMVDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDGLLARAGEIKQDKRRESIIANT 256

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + A +SR+LV L+ DVP+   L+  +L   +GP+LI FLK +EFT L  RVA     +A 
Sbjct: 257  DKALISRQLVTLKNDVPVAEGLDDFVLHAPDGPKLIGFLKTMEFTSLTRRVAEATSTEAG 316

Query: 298  NIEPVVL---DINTTENKGIAIETEIDRDTTIKTSQFSS---LSDQTSKINSEQTPQKLF 351
            +++ V +     +      +     +   +  +T Q +     +          TP  L 
Sbjct: 317  DVQAVAVIVERADHAHGPDVGAGAPVVARSGAETGQANGEATATPTADTAKQGDTPSLLS 376

Query: 352  LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
              RL++ +   I+  +Y  I +   ++ WV +    G  +F +   + D   ++ I +AI
Sbjct: 377  ALRLERAATGKIDTAAYPCIRDIATLKAWVAEAREAGVTAFDVRATSADPMQAELIGMAI 436

Query: 412  STLDQKDDT-SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            +T   +     F  ++   DL       +       +E L+ LK   E+   LKI  N+K
Sbjct: 437  ATAPGRAGYIPFAHKSGNGDL---LGGGALENQIPLREALAVLKPLLEDRSVLKIAQNLK 493

Query: 471  YDKLVLHRYGISMRGFEDIMLMSYVLDSGR-SSHDIASIAQKWLSY---TRKEILKSRKS 526
            YD +++ RYGI +  F+D ML+SYVLD+G    H +  +A+KWL +     K++  S KS
Sbjct: 494  YDLVIMSRYGIDVAPFDDTMLISYVLDAGTPHGHGMDQLAEKWLGHTPLQLKDVTGSGKS 553

Query: 527  SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            S+  D++   +   HA E+++V L+LWL+L+P+L  + L+ VYERL++P++ V+++ME  
Sbjct: 554  SVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLVSVYERLERPLVPVLARMEQR 613

Query: 587  GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
            GI +D+ +L ++S E+++    LEE IY L GE+ N+ SPKQLGDILF ++  P G+KTK
Sbjct: 614  GISVDRQILSRLSGELAQGAARLEEEIYQLIGERINIGSPKQLGDILFGRMGLPGGSKTK 673

Query: 647  TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            TGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  I+  T+RVHT Y+LA
Sbjct: 674  TGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFIHPDTRRVHTSYALA 733

Query: 707  STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            +T TGRL+S +PNLQNIP++T  G+KIR AFI+    +L+SADYSQIELR+LAH+A+I  
Sbjct: 734  ATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQ 793

Query: 767  LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            L Q F +  DIH + A+E+F V +E +  ++RR AK INF IIYGIS F LA QL IPR 
Sbjct: 794  LRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPRE 853

Query: 827  EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            EA++YIK+YF RFPGI +YIE+TK + R++G+VETIFGRRIHY +I S   SIR  NERA
Sbjct: 854  EASNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSIRAFNERA 913

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            +INA +QG+AADI RRAM+ + ++L+  KL+ +MLLQ+HDEL+FE  E E+     ++ H
Sbjct: 914  SINARLQGTAADIIRRAMVRMEEALDRAKLSARMLLQVHDELIFETVEAEVEATIPVVRH 973

Query: 947  SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             ME A +P +++ VPL V+ + +NNW E +
Sbjct: 974  VMENAAMPAVSMSVPLHVDARAANNWDEAH 1003


>gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 997

 Score = 1065 bits (2755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/987 (46%), Positives = 666/987 (67%), Gaps = 15/987 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+ ++R   +   
Sbjct: 15  MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLMLDARNTDVGIV 74

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRN++YP+YKANR   PE L+PQ  L+R AT+AF +P +EI+G+EA
Sbjct: 75  PTHFAVIFDYSSKTFRNDLYPEYKANRSAPPEDLIPQFGLIRQATRAFNLPCVEIEGYEA 134

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV  T  +YD +K+ +I I  VI+KWG+PPE
Sbjct: 135 DDLIATYARLACEAGGDTTIISSDKDLMQLVGDTVAMYDPMKDRQIGIPEVIEKWGVPPE 194

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV LQALTGDS+DN+PG+PGIG KTAA LL+++G+L+ +L  A  IKQ KRRE+I+  A
Sbjct: 195 KMVDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDTLLARAGEIKQDKRRESIIANA 254

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+SR+LV L  DVP+T  LE  +L   +GP+LI FLK +EFT L  RVA     +A 
Sbjct: 255 DKARISRQLVTLMNDVPVTEGLEDFVLHAPDGPKLIGFLKTMEFTSLTRRVAEATSTEAG 314

Query: 298 NIEPVVLDINTTENKGI----AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           +++ V + +   ++       A    + R+        +  + +TSK     TP  L   
Sbjct: 315 DVQAVAVTVERADHAHGPDVGAGLPPVARNAPGTEPDEAGGTAETSK--QGDTPSLLAAL 372

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           RL++ +   I+  +Y  I +   ++ WV +    G A+F +   + D   ++ I +AI+T
Sbjct: 373 RLERAATGKIDISAYHCIRDISTLKAWVAEAREAGIAAFDVRATSADPMQAELIGMAIAT 432

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              +   ++                +       +E L+ LK   E+   LKI  N+KYD 
Sbjct: 433 APGR--AAYIPFAHMSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVLKIAQNLKYDL 490

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGR-SSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           +++ RYG+ +  F+D ML+SYVLD+G    H + ++A+KWL +     K++  S KSS+ 
Sbjct: 491 VIMSRYGVDVAPFDDTMLISYVLDAGTPHGHGMDALAEKWLGHTPLQLKDVTGSGKSSVG 550

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            D++   +   HA E+++V L+LWL+L+P+L  + L+ VYERL++P++ V+++ME  GI 
Sbjct: 551 FDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLVSVYERLERPLVPVLARMEQRGIS 610

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D+ +L ++S E+++    LEE IY L GE+ N+ SPKQLGDILF ++  P G+KTKTGQ
Sbjct: 611 VDRQILSRLSGELAQGAARLEEEIYQLIGERINIGSPKQLGDILFGRMGLPGGSKTKTGQ 670

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           W T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  I+  T+RVHT Y+LA+T 
Sbjct: 671 WSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFIHPDTKRVHTSYALAATT 730

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++T  G+KIR AFI+  + +L+SADYSQIELR+LAH+A+I  L Q
Sbjct: 731 TGRLSSSDPNLQNIPVRTAEGRKIRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQLRQ 790

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  DIH + A+E+F V +E +  ++RR AK INF IIYGIS F LA QL IPR EA 
Sbjct: 791 AFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEAG 850

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +YIK+YF RFPGI +YIE+TK + R++G+VETIFGRRIHY +I S   S+R  NERA+IN
Sbjct: 851 NYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSLRAFNERASIN 910

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A +QG+AADI RRAMI + ++LE   L+ +MLLQ+HDEL+FE  E E+     ++ H ME
Sbjct: 911 ARLQGTAADIIRRAMIRMEEALERAGLSARMLLQVHDELIFETVEAEVEATIPVVRHVME 970

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A +P +++ VPL V+ + +NNW E +
Sbjct: 971 NAAMPAVSMSVPLHVDARAANNWDEAH 997


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score = 1063 bits (2749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/988 (45%), Positives = 644/988 (65%), Gaps = 24/988 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M K +HLFLVDGS++I+RA++A P L+RK DGLPV A++GFCNMLWKL++ SR  S+   
Sbjct: 1   MNKGDHLFLVDGSAYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLVEESRDTSVGVA 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ + TFRNE+Y DYKANR   PE L+PQ  L+R A +AF +P IE QGFEA
Sbjct: 61  PTHFAVIFDHSSTTFRNELYADYKANREAPPEDLVPQFALIREAVRAFDLPCIEKQGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATYT  A + G  VTI+S+DKDLMQLV P   LYD +K++++  + V +K+G+ P+
Sbjct: 121 DDLIATYTRHAVEAGGDVTIVSSDKDLMQLVGPRVILYDQMKDKRLGPDEVKEKFGVHPD 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GD+ DN+PG+PGIG KTAA LL EYG+LE +L  A+ IKQ KRREN++ +A
Sbjct: 181 KMIDLQALVGDTSDNVPGVPGIGPKTAAQLLDEYGDLETLLERAAEIKQNKRRENLIAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + ARLS+ LV L  + P+ +PL+ L + + +G +LISFLKA+EFT L  R A     DA+
Sbjct: 241 DQARLSKTLVTLDQNTPLDVPLDDLFIHEPDGEKLISFLKAMEFTSLTRRAAAQLGTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E   + ++T             R   +  +  +  +          TP  L   R   
Sbjct: 301 EVESAAIAVDTPA-----------RGPDLDPAGSAVAAPGAGDAALPLTPAALVESRRAA 349

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +    ++ +Y  I +   +  W+ +    G  +F     ++ A     + ++ +T   +
Sbjct: 350 AAASVFDHSAYVTIRDAATLLAWMDEARETGLLAFDTEASSLSAMKCDLVGVSFATRAGR 409

Query: 418 DDTSFKVETIFID----LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                            LS    +D  G      E L+ LK   E++  LKIG N+KYD 
Sbjct: 410 AAYVPLAHVSPSGEADLLSDKAVEDEIGPQLPIDEALAILKPVLEDDAVLKIGQNVKYDY 469

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSYT---RKEILKSRKSSI 528
           LV+ R+GI+M  F+D ML+SY LD+  S   H +  +++++L +     KE+  S K + 
Sbjct: 470 LVMRRHGITMAPFDDTMLISYALDASASLAGHGMDELSERFLGHKPMSYKELCGSGKGAR 529

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           PI   +  +V  +A E+++V L+LW +L+P+L+ E L  VYERL++P++ V+++ME  GI
Sbjct: 530 PIAACAIDKVTAYAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGI 589

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D+ +L ++S   ++    LE  I +++GE FN  SPKQLG++LF KL  P G KTK+G
Sbjct: 590 KVDRQILSRLSGRFAQKQAGLEAEIAEIAGETFNPGSPKQLGEVLFGKLGLPGGKKTKSG 649

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T  + LE +    +P+ + I++WRQL+K+K TY D+LP H++ +  R+HT YS+AST
Sbjct: 650 QWSTDVRVLEDLAAEGHPLPRRIVDWRQLTKLKGTYTDTLPGHMDAQG-RIHTSYSMAST 708

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIP++T+ G+ IR AF++P    L+SADYSQIELRILAHIA I  L 
Sbjct: 709 TTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPAGHSLVSADYSQIELRILAHIADIPQLK 768

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F   LDIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA
Sbjct: 769 EAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLSIPRDEA 828

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YIKRYF RFPGI +Y++ TK F +++G+VET+FGRR+HY +I SP +S+R  NERAAI
Sbjct: 829 GTYIKRYFERFPGIRDYMDSTKAFAKEHGHVETLFGRRVHYPDIRSPNASVRAFNERAAI 888

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI RRAMI +  +L D  L+ +MLLQ+HDEL+FEV +++I     ++   M
Sbjct: 889 NAPIQGTAADIIRRAMIRMEPALADAGLSARMLLQVHDELIFEVEDDQIDATLPVVRRVM 948

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E+A LP + L VP++V+ K + NW E +
Sbjct: 949 EEAALPVVQLSVPIEVDAKAAANWDEAH 976


>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
 gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
          Length = 978

 Score = 1061 bits (2743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/984 (47%), Positives = 656/984 (66%), Gaps = 14/984 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR---KESI 57
           M+K +HL+LVDGS++I+RA++A P L+RK DGLP+ A++GFCNMLWKLL  +R   +  +
Sbjct: 1   MKKGDHLYLVDGSAYIFRAYHALPPLTRKSDGLPIGAVSGFCNMLWKLLDEARDTARGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNE+YP+YKANR + PE L PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSTTFRNELYPEYKANRSEPPEDLRPQFALIRQATRAFDVPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY  +A + G   TI+S+DKDLMQL++P   +YDT+K+  +D E V  K+G+ P 
Sbjct: 121 DDIIATYAKLATEAGADTTIVSSDKDLMQLINPQVVMYDTMKDIVVDEEGVFAKFGVDPS 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GDS DNIPG+PGIG KTAA LL EYG LE +L  A  IKQ KRREN++E+A
Sbjct: 181 KMIDLQALAGDSTDNIPGVPGIGPKTAAQLLDEYGTLEELLERAGEIKQNKRRENMIEHA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+S++LV LR DVP+ + L+ L L+  NGPRLI+FLK +    L  RVA   D DAA
Sbjct: 241 DLARISKQLVTLRDDVPLDMQLDELALDTVNGPRLIAFLKGIGLNSLTRRVAVDTDTDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N+E   + +   E +G  ++     D      Q  +      +      P KL  E   K
Sbjct: 301 NVEAEEVGVEGYEMRGPDMDAPQSIDGDHTQPQDDNGDGPPYR------PSKLVEELTAK 354

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++   I + +Y  + + + +++W+ +   +G  +    T ++DA     + ++++T   +
Sbjct: 355 VAAEKIEHSAYETVRDAEALKRWIAEAHDLGHVAVDTETTSLDAMACDLVGVSLATGPGR 414

Query: 418 DDTSFKVET--IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                         D     S+         KE L+ LK   E    LKI  N+KYD LV
Sbjct: 415 ACYIPLAHLKDGSSDDGDMFSEGLDPDQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLV 474

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
           L RYGI +  F+D ML+SYVLD+GR  H + +++   L +     KE+  S KS +  DK
Sbjct: 475 LSRYGIEVGPFDDTMLLSYVLDAGRGKHGMDALSLAHLDHTPIPFKEVAGSGKSMVTFDK 534

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +S  +   +A E+++V L+LW LL+ +L+ EK++ VYERL++P++ V+ +ME  G++ID+
Sbjct: 535 VSIEKASAYAAEDADVTLRLWTLLKARLVAEKMVTVYERLERPLVPVLCRMEARGVEIDR 594

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L ++S E+++    +E +I++++GE  N++SPKQLG++LF K++ P G KTKTGQW T
Sbjct: 595 QILSRLSGELAQKAAGIEADIHEMAGEPINIASPKQLGELLFGKMELPGGKKTKTGQWAT 654

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            AQ LE +    + + + I++WRQL+K+KSTY D+LP  INK T RVHT Y++AST TGR
Sbjct: 655 GAQALEDLAAEGHELPRRIVDWRQLTKLKSTYTDALPTFINKTTGRVHTSYAMASTTTGR 714

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
            +S EPNLQNIP++T+ G+KIR AFI+    KL+SADYSQIELR+LAH+A I+ L Q F 
Sbjct: 715 FSSSEPNLQNIPVRTEAGRKIRTAFIAADGHKLVSADYSQIELRVLAHMADISQLKQAFA 774

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + +DIH M A+E+F V +E + P +RR AK INF IIYGIS F LA  L I R EA+DYI
Sbjct: 775 DGIDIHAMTASEMFNVPVEGMDPSIRRQAKAINFGIIYGISAFGLANNLGIDRGEASDYI 834

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           K YF RFPGI +Y+++TK F R++GYVETIFGRR HY EI S    +R  NERAAINAPI
Sbjct: 835 KMYFERFPGIRDYMDETKKFAREHGYVETIFGRRAHYPEIKSSNPQMRAFNERAAINAPI 894

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI RRAM  +  +L   KL+ +MLLQ+HDEL+FEVP++E+    + +V  ME A 
Sbjct: 895 QGSAADIIRRAMARMEGALAAEKLSAQMLLQVHDELIFEVPDDEVDATIETVVKVMEDAP 954

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
           +P ++L VPL+V+ + + NW E +
Sbjct: 955 MPALSLSVPLQVDARAAENWDEAH 978


>gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1]
 gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
          Length = 994

 Score = 1060 bits (2741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/983 (46%), Positives = 641/983 (65%), Gaps = 9/983 (0%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN-SRKES--I 57
           +  ++HL LVDGS+FI+RA++A P L+RK DGLPV A+AGFCNMLWKLL      E    
Sbjct: 14  LTADDHLILVDGSTFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLWKLLTEGLTPEEGDE 73

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ A TFRN+IYP YKA RP+ PE L+PQ  L+R AT+AF +  IE +GFEA
Sbjct: 74  PTHFAVIFDHSAKTFRNDIYPAYKAQRPEPPEDLVPQFGLIREATRAFSVACIEQEGFEA 133

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   A   G  VTI+S DKDLMQL+ P   + DT+K +      V++K+G+ P+
Sbjct: 134 DDLIATYARQAADAGARVTIVSGDKDLMQLIGPRIGMIDTMKNKIFGEAEVVEKFGVGPD 193

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ +QAL GDSIDN+PG+PGIG KTAA L+ E+G+LE +L  A  IKQ KRREN++E+A
Sbjct: 194 KVIEVQALAGDSIDNVPGVPGIGIKTAAQLIGEFGDLEALLARADTIKQTKRRENLIEFA 253

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E AR+SRKLV L+ DVP+  P+  L +   +GP+ + FLKALEFT L  RVA     D A
Sbjct: 254 EQARISRKLVTLKQDVPVETPVGDLAVTSVDGPKAVGFLKALEFTTLTRRVAEATGADIA 313

Query: 298 NIEPVVLDI-NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            IEP+ LDI       G   + E       + +  SS  D+     +  TPQ L   R +
Sbjct: 314 AIEPLDLDIPGWHRPDGKGRQMERAEAAADRPTAASSAPDELPAA-AGMTPQALAAARAE 372

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                PI+   Y  + +   ++ WV +    G  +F   T ++DA  ++ + ++++T   
Sbjct: 373 AAKAEPIDRGVYETVTSLDRLKAWVAEAVETGLVAFDTETTSLDAMQAELVGVSLATAPG 432

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K      +  +  +  +              E L  L+   E+   LKI  N+KYD LV+
Sbjct: 433 K-ACYVPLAHVDGEGDLLGGGGLVEGQIPLAEALDVLRPMLEDAGVLKIAQNLKYDWLVM 491

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            RYG+ +  ++D ML+SYVLD+G+  + +  +A++WL +     KE+  S K+ +  DK+
Sbjct: 492 ARYGVEIAPYDDTMLLSYVLDAGKGGNGMDELAERWLDHTPIPFKEVAGSGKAMVTFDKV 551

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +   +A E+++V L+LW +L+P+L+ E++  VYE L++PM+ V+++ME  GI +D+ 
Sbjct: 552 PIDKATAYAAEDADVTLRLWRVLKPRLVAERMATVYETLERPMVPVLARMERRGISVDRQ 611

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L ++S + ++ + +LE  I+ L+GE FN+ SPKQLGDILF K+  P G KTKTG W T+
Sbjct: 612 MLSRLSGDFAQGMAALEAEIHALAGESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTS 671

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              L+ +    + +   I+ WRQLSK+KSTY+D+LP++I+  T+RVHT YSLAST TGRL
Sbjct: 672 VSVLDDLAAEGHELPSKIVAWRQLSKLKSTYSDALPSYIHPETKRVHTSYSLASTTTGRL 731

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP++T+ G+KIR+AF++   +KLISADYSQIELR+LAH+A I  L Q F +
Sbjct: 732 SSSEPNLQNIPVRTEEGRKIRKAFVADKGRKLISADYSQIELRVLAHMADIPQLKQAFAD 791

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH M A+E+FGV IE + P +RR AK INF IIYGIS F LA QL + R EA DYIK
Sbjct: 792 GLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAFGLAAQLGLSRGEAGDYIK 851

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RFPGI +Y+E  K  V   GYV T+FGR+ HY ++N+   S+R   ERAAINAPIQ
Sbjct: 852 TYFERFPGIRDYMEAIKKEVHTKGYVTTVFGRKAHYPDVNTSNPSLRAFYERAAINAPIQ 911

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI RRAM+ +  +L   KL  +MLLQ+HDEL+FEVPE+++     ++   ME A  
Sbjct: 912 GSAADIIRRAMVRMDAALAAAKLDAEMLLQVHDELIFEVPEDQVEATIPVVRRVMETATE 971

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
           P + L VPL+V+ + ++NW E +
Sbjct: 972 PALTLSVPLQVDARAADNWDEAH 994


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score = 1055 bits (2728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/991 (45%), Positives = 660/991 (66%), Gaps = 26/991 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+  +R  S+   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLVSEARDTSVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ + TFRNE+YP+YKANR   PE L+PQ  ++R AT+AF +P IE++GFEA
Sbjct: 61  PTHFAVIFDHSSKTFRNELYPEYKANRSAPPEDLVPQFAVIREATRAFDLPCIEMEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G  VT+IS+DKDLMQLV P   +YD++K+ +I +  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAREAGADVTVISSDKDLMQLVGPQVSMYDSMKDRQIGVPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQALTGDS+DN+PGIPGIG KTAA L++++G+L+ +L  A  IKQ KRRENI+E+A
Sbjct: 181 KMIDLQALTGDSVDNVPGIPGIGPKTAAQLIEQFGDLDTLLERAGEIKQNKRRENIVEFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+SR+LV LR DV ++  L  L+L   NGP+L++FLK +EFT L  RVA   D DA+
Sbjct: 241 DKARISRELVRLRDDVEVSEKLGELVLNPLNGPKLVAFLKGMEFTSLTRRVADATDTDAS 300

Query: 298 NIEPVVLDINTT-ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            ++   + ++   E +G  ++     +  +           T+   ++ TPQ L   R  
Sbjct: 301 AVDAADVAVDAAAEMRGPDLDPGDAANAAV-----------TATGQNDDTPQGLAKRRAA 349

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +     I+  +Y  + + + ++ W       G  +F   T ++DA  ++ +  +++  + 
Sbjct: 350 EAGSAKIDTTAYETLSDIEQLKAWCAMARETGVVAFDTETTSLDAMQAELVGFSLAVPEA 409

Query: 417 KDDTS-FKVETIFIDLSVH-------TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
             DT   KV   +  L+                     +  L  LK   E    LKIG N
Sbjct: 410 APDTGELKVRACYAPLAHSNGVGDLLGGGGLQPGQMPVRAALDELKALLEEPAVLKIGQN 469

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRK 525
           +KYD LV+ ++ I ++ F+D ML+SYVLD+G+  H + +++++WL +     K++  S K
Sbjct: 470 LKYDMLVMAQHNIEIKSFDDTMLLSYVLDAGQGGHGMDALSERWLGHKTIGYKDVTGSGK 529

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           S+IP  +++  +   +A E++ V L+LW  L+ +L+ E +  VYERL++P+  V+ +ME 
Sbjct: 530 SAIPFAQVAIDKATAYAAEDAEVTLRLWHALKVRLVSEGMTSVYERLERPLAPVLMRMEQ 589

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI++D+ +L ++S E+++   +LE  I +L+GE FN+ SPKQLG+ILF K+  P G+KT
Sbjct: 590 RGIRVDRQILSRLSGELAQGAAALEAEIQELAGENFNVGSPKQLGEILFDKMSLPGGSKT 649

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTGQW T+AQ LE +    + + + I++WRQL+K+KSTY D+LP  IN  T+RVHT +++
Sbjct: 650 KTGQWSTSAQALEDLAAAGHELPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSFAM 709

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A+T TGRL+S +PN+QNIP++T  G+KIR AF++ P   LISADYSQIELR+LAH+A I 
Sbjct: 710 AATTTGRLSSSDPNIQNIPVRTAEGRKIRTAFVAEPGNVLISADYSQIELRVLAHVANIP 769

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L Q F + +DIH M A+E+FGV IE +  ++RR AK INF IIYGIS F LA QL I R
Sbjct: 770 QLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIER 829

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           SEA DYI++YF RFPGI +Y++ TK   ++NGYV TIFGRR HY EI S    +R  NER
Sbjct: 830 SEAGDYIRKYFERFPGIKDYMDATKAEAKENGYVTTIFGRRAHYPEIRSSNPQVRAFNER 889

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAPIQGSAADI RRAM+ +  +LE   +  +MLLQ+HDEL+FE  E +      +IV
Sbjct: 890 AAINAPIQGSAADIIRRAMVRMEPALEAAGMQARMLLQVHDELIFETAEADADKIIPVIV 949

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             ME A +P I++ VPL+V+ + + NW + +
Sbjct: 950 EVMENAAMPAIDMAVPLQVDARAAKNWDQAH 980


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score = 1053 bits (2724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/999 (48%), Positives = 667/999 (66%), Gaps = 23/999 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTI+S+DKDLMQLV+P   +YD++K+++I I  V++KWG+PPE
Sbjct: 121 DDIIATYARQAEAAGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQIGIPDVVEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANV 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A+LSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 241 EMAKLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTSLTRRVAEVCDCDAS 300

Query: 298 NIEPVVLDINTTENKGI----AIETEI----DRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
            IEP V+ I            A E E       D + ++    S +     +    +P  
Sbjct: 301 VIEPAVVPIEWGAAAHGPDLDAAEPEPVAGGIPDVSGESVPVPSRAKAKPGVEGAFSPAD 360

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
           L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ +  
Sbjct: 361 LAKARAEAFATLPFDHSTYETIRDLATLDRWIAAARDTGLIAFDTETTSLDAMQAELVGF 420

Query: 410 AISTLDQ-KDDTSFKVETIFIDLSVHTSQDS------TGKNTLTKEILSYLKKFFENEHF 462
           A++  D   D T  K+   ++ L+                    ++ L  LK   E+E  
Sbjct: 421 AMAIADNVADPTGTKIRAAYVPLAHKDGVGDLLGGGLAENQIPMRDALPRLKALLEDESV 480

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
           LK+  N+KYD L++ RYG+  + F+D ML+SYVLD+G  +H +  +++K+L +     K+
Sbjct: 481 LKVAQNLKYDYLLMKRYGVETKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKD 540

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           +  S K++I  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P++ V
Sbjct: 541 VAGSGKANITFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPV 600

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K+  
Sbjct: 601 LARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMGL 660

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
             G+KTKTGQW T+A  LE +      + + I++WRQL+K+KSTY D+LP +++  T+RV
Sbjct: 661 AGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETRRV 720

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+LA
Sbjct: 721 HTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVLA 780

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA 
Sbjct: 781 HVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLAN 840

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S+
Sbjct: 841 QLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSV 900

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEI 937
           R  NERAAINAPIQGSAAD+ RRAMI +  +L +  L    +MLLQ+HDEL+FEV +E++
Sbjct: 901 RAFNERAAINAPIQGSAADVIRRAMIKMEPALAEAGLAERVRMLLQVHDELIFEVEDEDV 960

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A  IIV  ME A +P + +RVPLKV+ + + NW E +
Sbjct: 961 EKAMPIIVSVMENATMPALEMRVPLKVDARAATNWDEAH 999


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score = 1051 bits (2719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/986 (45%), Positives = 641/986 (65%), Gaps = 21/986 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++  +H+ L+DGS++I+RA++A P L+R  D LPV A+AGFCNMLWKL++        +H
Sbjct: 7   LEAGDHVVLIDGSAYIFRAYHALPPLTRPSDKLPVGAVAGFCNMLWKLVRAQGFSPAPTH 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR +IYP YKA RP +PE L+PQ PL+R AT+AF +  +E   +EADD+
Sbjct: 67  LAVVFDKSEQTFRKDIYPLYKAQRPDLPEDLIPQFPLIREATRAFDLACVEQDKYEADDL 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +ATY  +A+ +G  VTIIS+DKDLMQLV      +YD +K+  I +E V +K+G+ PEK+
Sbjct: 127 MATYAELAKAKGALVTIISSDKDLMQLVEGSRVRMYDPMKDRAIGVEEVFEKFGVGPEKV 186

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V +Q+L GDS+DN+PG+PGIG KTAA LL EYG+L+ +L  A  IKQ KRREN++E+A+ 
Sbjct: 187 VDVQSLAGDSVDNVPGVPGIGIKTAAQLLAEYGDLDTLLARAEEIKQTKRRENLIEFADQ 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           ARLSR+LV L+ DVP+ +PL+ + + +  G +LI+FLKA+EF  L  RVA TY+ +AA I
Sbjct: 247 ARLSRELVTLKRDVPLEVPLDDIAVVEPEGKKLIAFLKAMEFNTLTRRVAETYEIEAAAI 306

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           EP   D         + E     D     S      +  +   S  TPQ L   R+++ +
Sbjct: 307 EP---DSGLKAGGHESDELRAGLDPDTDRSAIPEGIEPPAPGESGLTPQALSAARIKEAT 363

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P++   Y  +   + +++WV +   +G  +    T  +D   +  +  +++T   +  
Sbjct: 364 ATPVDRSKYETVTTLERLKEWVARAFDLGFVAVDTETTGLDPMQADIVGFSLATAPNE-- 421

Query: 420 TSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                   ++ LS     +               + ++ +K   E+   LKIG N+KYD 
Sbjct: 422 ------ACYVPLSHKGGDEGLFSEGLLPDQIPIPDAVAAIKPLMEHPGVLKIGQNLKYDW 475

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
           L+L R GI +  ++D ML+SYVLD+G S H +  ++ +WL +     +E+    K  I  
Sbjct: 476 LILKRLGIELGPYDDTMLVSYVLDAGASPHGMDPLSMRWLGHTPIKFEEVCGKGKGQICF 535

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D+ +  +  ++A E+++V L+LW +L+P+L  E    VYE L++P++ V++QME  GI I
Sbjct: 536 DRAAIDKATDYAAEDADVTLRLWRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGITI 595

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D+ +L ++S E ++ +  LE  I +++GE FN  SPKQLGDILF K++ P G KT TG W
Sbjct: 596 DRQMLSRLSGEFAQGMGRLEAEISEMAGETFNPGSPKQLGDILFGKMQIPGGRKTPTGAW 655

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A  LE++    + + + IL+WRQL K+KSTY D+LP ++NK T RVHT ++LA+T T
Sbjct: 656 STGADVLEELAEQGHELPRRILDWRQLQKLKSTYTDALPTYVNKETGRVHTSFALAATTT 715

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S EPNLQNIP++T+ G+KIR+AFI+ P  KL+SADYSQIELR+LA IA    L Q 
Sbjct: 716 GRLSSSEPNLQNIPVRTEEGRKIRKAFIAAPGHKLVSADYSQIELRLLAEIADTPSLRQA 775

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F++ LDIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IPR EA  
Sbjct: 776 FQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIPREEAGA 835

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIKRYF RFPGI  Y+++T+NF R++GYVET+FGRR HY +I++   SIR  NERAAINA
Sbjct: 836 YIKRYFERFPGIRAYMDETRNFAREHGYVETLFGRRCHYPDISAKNPSIRAFNERAAINA 895

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            +QGSAADI RRAM  +  +LE   L+ +MLLQ+HDEL+FEVP++EI     ++  +ME 
Sbjct: 896 RLQGSAADIIRRAMARMDAALEKAGLSARMLLQVHDELIFEVPDDEIAATIPVVRETMEL 955

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A  P + L+VPLKV+ + + NW E +
Sbjct: 956 APFPAVALKVPLKVDARAAENWDEAH 981


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score = 1049 bits (2712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/999 (48%), Positives = 669/999 (66%), Gaps = 23/999 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTI+S+DKDLMQLVSP   +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDIIATYARQAEASGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLDRATEIKQVKRRETILANI 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + ARLSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 241 DMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDAS 300

Query: 298 NIEPVVLDINTTENKG--------IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
            IEP ++++   +            A       + + +++     +   + +    +P  
Sbjct: 301 AIEPAIVNVEWGKAAHGPDLDAAEPAPVAGGIPEVSGESAPVPPRAKAKASVEGAFSPAD 360

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
           L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ +  
Sbjct: 361 LAKARAEAFATLPFDHTAYVTIRDLATLDRWIADARATGLVAFDTETTSLDAMQAELVGF 420

Query: 410 AISTLDQ-KDDTSFKVETIFIDLSVH------TSQDSTGKNTLTKEILSYLKKFFENEHF 462
           +++  D   D T  K+   +I L+                    ++ L  LK   E+   
Sbjct: 421 SLAIADNTADPTGTKIRAAYIPLAHKNGVGDLLGGGLADNQISMRDALPRLKSLLEDAAV 480

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
           LK+  N+KYD L++ RYGI  R F+D ML+SYVLD+G  +H +  +++K+L +     K+
Sbjct: 481 LKVAQNLKYDYLLMQRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKD 540

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           +  S K+++  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P++ V
Sbjct: 541 VAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPV 600

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K+  
Sbjct: 601 LARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERFNIGSPKQLGDILFGKMGL 660

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
             G+KTKTGQW T+AQ LE +      + + I++WRQL+K+KSTY D+LP +++  T+RV
Sbjct: 661 AGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHAETKRV 720

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+LA
Sbjct: 721 HTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVLA 780

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA 
Sbjct: 781 HVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLAN 840

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S+
Sbjct: 841 QLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSV 900

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEEI 937
           R  NERAAINAPIQGSAAD+ RRAMI +  +L +  L    +MLLQ+HDEL+FEV +E++
Sbjct: 901 RAFNERAAINAPIQGSAADVIRRAMIRMEPALAEVGLGDRVRMLLQVHDELIFEVEDEDV 960

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A  IIV  ME A +P + +RVPL+V+ + ++NW E +
Sbjct: 961 EKAMPIIVSVMENATMPALEMRVPLRVDARAASNWDEAH 999


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score = 1049 bits (2712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/999 (48%), Positives = 666/999 (66%), Gaps = 23/999 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
            M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R   +   
Sbjct: 18   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 77

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 78   PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 137

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DDIIATY   AE  G  VTI+S+DKDLMQLVSP   +YD++K+++I I  VI+KWG+PPE
Sbjct: 138  DDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVIEKWGVPPE 197

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 198  KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 257

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 258  DMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEACDCDAS 317

Query: 298  NIEPVVLDINTTENKGI----AIETEIDRDTTIKTS----QFSSLSDQTSKINSEQTPQK 349
             IEP ++ I   E        A E E       + S         +   S +    +P  
Sbjct: 318  AIEPAIVRIEWGETARGPDLDAAEPEPVAGGIPEVSGESVPMPPRAKAKSAVEGAFSPAD 377

Query: 350  LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
            L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ +  
Sbjct: 378  LAKARAEAFATLPFDHSAYVTIRDLVTLDRWIADARATGLVAFDTETTSLDAMQAELVGF 437

Query: 410  AISTLDQ-KDDTSFKVETIFIDLSVH------TSQDSTGKNTLTKEILSYLKKFFENEHF 462
            +++  D   D T  K+   ++ L                     ++ L  LK   E+E  
Sbjct: 438  SLAIADNTADPTGTKIRAAYVPLVHKNGVGDLLGGGLADNQIPMRDALPRLKALLEDESV 497

Query: 463  LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
            LK+  N+KYD L+L RYGI  R F+D ML+SYVLD+G  +H +  +++K+L +     K+
Sbjct: 498  LKVAQNLKYDYLLLKRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKD 557

Query: 520  ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            +  S K+++  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P++ V
Sbjct: 558  VAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPV 617

Query: 580  VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
            +++ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K+  
Sbjct: 618  LARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERFNIGSPKQLGDILFGKMGL 677

Query: 640  PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
              G+KTKTGQW T+AQ LE +      + + I++WRQ++K+KSTY D+LP +++  T+RV
Sbjct: 678  SGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRV 737

Query: 700  HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
            HT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+LA
Sbjct: 738  HTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVLA 797

Query: 760  HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            H+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA 
Sbjct: 798  HVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLAN 857

Query: 820  QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S+
Sbjct: 858  QLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSV 917

Query: 880  RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEI 937
            R  NERAAINAPIQGSAAD+ RRAMI +  +L +  L    +MLLQ+HDEL+FEV ++++
Sbjct: 918  RAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRMLLQVHDELIFEVEDQDV 977

Query: 938  TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              A  +IV  ME A +P + +RVPL+V+ + + NW E +
Sbjct: 978  EKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDEAH 1016


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score = 1048 bits (2711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/999 (48%), Positives = 669/999 (66%), Gaps = 23/999 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
            M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R   +   
Sbjct: 18   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 77

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 78   PTHLAVIFDYSARTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 137

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DDIIATY   AE  G  VTI+S+DKDLMQLVSP   +YD++K+++I I  V++KWG+PPE
Sbjct: 138  DDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVVEKWGVPPE 197

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 198  KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 257

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 258  DMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEACDCDAS 317

Query: 298  NIEPVVLDINTTENKGI----AIETEI----DRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
             IEP ++ I   E        A E E       D + ++      +   + +    +P  
Sbjct: 318  AIEPAIVRIEWGEKARGPDLDAAEPEPVAGGIPDVSGESVPVPPRAKAKTAVEGAFSPAD 377

Query: 350  LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
            L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ +  
Sbjct: 378  LAKARAEAFATLPFDHSAYVTIRDLATLDRWIADARATGLVAFDTETTSLDAMQAELVGF 437

Query: 410  AISTLDQ-KDDTSFKVETIFIDLSVH------TSQDSTGKNTLTKEILSYLKKFFENEHF 462
            +++  D   D T  K+   ++ L                      + L+ LK   E+E  
Sbjct: 438  SLAIADNTADPTGTKIRAAYVPLVHKNGVGDLLGGGLAENQIPMGDALARLKALLEDESI 497

Query: 463  LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
            LK+  N+KYD L++ RYGI  R F+D ML+SYVLD+G  +H +  +++K+L +     K+
Sbjct: 498  LKVAQNLKYDYLLMKRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKD 557

Query: 520  ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            +  S K+++  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P++ V
Sbjct: 558  VAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPV 617

Query: 580  VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
            +++ME  GI +D+ +L ++S E++++   LE+ IY L+GE+FN+ SPKQLGDILF K+  
Sbjct: 618  LARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERFNIGSPKQLGDILFGKMGL 677

Query: 640  PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
              G+KTKTGQW T+AQ LE +      + + I++WRQ++K+KSTY D+LP +++  T+RV
Sbjct: 678  SGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRV 737

Query: 700  HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
            HT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+LA
Sbjct: 738  HTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVLA 797

Query: 760  HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            H+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA 
Sbjct: 798  HVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLAN 857

Query: 820  QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S+
Sbjct: 858  QLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSV 917

Query: 880  RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEI 937
            R  NERAAINAPIQGSAAD+ RRAMI +  +L +  L    +MLLQ+HDEL+FEV +E++
Sbjct: 918  RAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRMLLQVHDELIFEVEDEDV 977

Query: 938  TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              A  +IV  ME A +P + +RVPL+V+ + + NW E +
Sbjct: 978  EKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDEAH 1016


>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
 gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
          Length = 979

 Score = 1047 bits (2707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/979 (45%), Positives = 627/979 (64%), Gaps = 20/979 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++K +HLFLVDGS +I+RA++A P L+RK DG+PV A+AGFCNML+KL+++++ E   +H
Sbjct: 18  LKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGMPVGAVAGFCNMLYKLIEDTKDEFEPTH 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD  A TFRN+IYP+YKANR +  E L PQ  LVR AT+AFG+P IE +G+EADDI
Sbjct: 78  LAVIFDAAAKTFRNDIYPEYKANRVEPSEDLRPQFALVRDATRAFGVPCIEKKGYEADDI 137

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IATY  +A + G  VTI+S+DKDLMQLV+    + DT+K + I  E VI+K+G+PPEK+V
Sbjct: 138 IATYARLAHEAGARVTIVSSDKDLMQLVNDNVDMLDTMKLKTIAREQVIEKFGVPPEKVV 197

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GDS DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ+KRREN++E+AE A
Sbjct: 198 DVQALAGDSTDNVPGVPGIGIKTAAQLIGEYGDLETLLARAGEIKQQKRRENLIEFAEQA 257

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+SR+LV L  +VP+  PLE + + + +   LI F K +EF  L  RV   ++ D   I 
Sbjct: 258 RISRRLVELDNNVPLEEPLEGMGVREPDPETLIGFFKDMEFNTLTRRVGERFNIDVDAIP 317

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                   T+    A   E  +                 K    +T +      + K   
Sbjct: 318 AAGKHALITDGALAAPAGEEPKKE---------------KQTVARTARGGTPGAVPKGID 362

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              N+ +Y  +    D+ +W+ +    G  +    TD++    ++ + +++S L  +   
Sbjct: 363 ADFNDANYVAVTALADLDEWIARAREQGFLAVDTETDSLFPMQARLVGVSLSLLPGEACY 422

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                     L    +          KE ++ LK   E+   LKIG N+K+D  VL ++G
Sbjct: 423 IPLQHGAGGGLDFADAGGQP--QIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQHG 480

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
           I ++G +D MLMSY LD+G   H +  +++  L +      E+    K+ I  D++   +
Sbjct: 481 IQLKGLDDTMLMSYALDAGVHGHGMDELSELHLGHKPISFAEVAGKGKAQITFDQVPVDR 540

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E+++V L+LW +L+P+L+ E+ + VYE L++P++ V+++ME  G+++D+ +L +
Sbjct: 541 ATAYAAEDADVTLRLWHILKPRLVAERRVTVYETLERPLVSVLAEMERAGVKVDKAVLAR 600

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S + S+ +   E+ IY+L+GE+FN+ SPKQLG+ILF K     G KTKTG W T A  L
Sbjct: 601 LSGDFSQKMAQYEDEIYELAGERFNIGSPKQLGEILFDKQSLEGGRKTKTGAWSTDADTL 660

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    + + + +L+WR LSK+KSTY D+LP +IN  T R+HT YSLAST TGRLAS E
Sbjct: 661 EALAAKGHELPQRVLDWRGLSKLKSTYTDALPEYINPETGRIHTCYSLASTSTGRLASTE 720

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++T+ G+KIR AF++     LISADYSQIELR+LAHIA I  L + F   LDI
Sbjct: 721 PNLQNIPVRTEDGRKIRTAFVAEKGNLLISADYSQIELRLLAHIADIEALKKAFAEGLDI 780

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H M A+E+FGV IE +   +RR AK INF IIYGIS F LA QL IPR EA +YI RYF 
Sbjct: 781 HAMTASEMFGVPIEGMESSVRRRAKAINFGIIYGISAFGLANQLGIPRQEAGEYIDRYFK 840

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RFPGI  Y++ T++F  +NGYVETIFGRRIH   INS   + ++  ERAAINAPIQGSAA
Sbjct: 841 RFPGIRAYMDDTRDFAHKNGYVETIFGRRIHLPAINSKNPAEKSFMERAAINAPIQGSAA 900

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI RRAMI + ++L D KLA +MLLQ+HDEL+FEVPE+E    S+++   M  A  P + 
Sbjct: 901 DIIRRAMIRMPQALADAKLAARMLLQVHDELIFEVPEKEAEKTSKVVSRIMSDAAAPAVA 960

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V+ + + NW E +
Sbjct: 961 LTVPLDVDARAAKNWDEAH 979


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score = 1046 bits (2706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/997 (48%), Positives = 668/997 (67%), Gaps = 21/997 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELVPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTI+S+DKDLMQLV+P   +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDIIATYARQAEAVGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQIGIPDVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E AR+SR+LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 241 EMARISRELVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDAS 300

Query: 298 NIEPVVLDINTTENKGI----AIETEIDRDTTIKTSQFSSLSDQTSK--INSEQTPQKLF 351
            IEP V+ I   +        A E         + S  S      +K  +    +P  L 
Sbjct: 301 AIEPAVVRIEWGDAAHGPDLDAAEPAPVAGGIPEVSGQSVPVPPRAKAGVEGAFSPADLA 360

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ +  ++
Sbjct: 361 KARAEAFAALPFDHSAYVTIRDLATLDRWIADARDTGLVAFDTETTSLDAMQAELVGFSM 420

Query: 412 STLDQ-KDDTSFKVETIFIDLSVH------TSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
           +  D   D T  K+   ++ L+                    ++ L  LK   E+E  LK
Sbjct: 421 AIADNVADPTGTKIRAAYLPLAHKNGVGDLLGGGLAENQVPMRDALPRLKALLEDESVLK 480

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521
           +  N+KYD L+L RYGI  + F+D ML+SYVLD+G  +H +  +++K+L +     K++ 
Sbjct: 481 VAQNLKYDYLLLKRYGIETKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVA 540

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            S ++++  D +   +   +A E+++V L+LWL+L+P+L+   L  VYERL++P++ V++
Sbjct: 541 GSGRANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLVAAGLTSVYERLERPLLPVLA 600

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K+    
Sbjct: 601 RMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMGLAG 660

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           G+KTKTGQW T+A  LE +      + + I++WRQL+K+KSTY D+LP +++  T+RVHT
Sbjct: 661 GSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHT 720

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+LAH+
Sbjct: 721 SYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVLAHV 780

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL
Sbjct: 781 AEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQL 840

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S+R 
Sbjct: 841 SIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRA 900

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEITT 939
            NERAAINAPIQGSAAD+ RRAMI +  +L +  L    +MLLQ+HDEL+FEV +E++  
Sbjct: 901 FNERAAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVEDEDVDK 960

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           A  IIV  ME A +P + +RVPLKV+ + + NW E +
Sbjct: 961 AMPIIVSVMENATMPALEMRVPLKVDARAATNWDEAH 997


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score = 1046 bits (2705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/997 (48%), Positives = 665/997 (66%), Gaps = 21/997 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELVPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDIIATY   AE  G  VTI+S+DKDLMQLV+P   +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDIIATYARQAEAVGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQIGIPDVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E ARLSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+
Sbjct: 241 EMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDAS 300

Query: 298 NIEPVVLDINTTENKGI----AIETEIDRDTTIKTSQFSSLSDQTSK--INSEQTPQKLF 351
            IEP V+ I   +        A E         + S  S      +K  +    +P  L 
Sbjct: 301 AIEPAVVRIEWGDAAHGPDLDAAEPAPVAGGIPEVSGQSVPVPPRAKAGVEGAFSPADLA 360

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             R +  +    ++ +Y  I +   + +W+      G  +F   T ++DA  ++ +  ++
Sbjct: 361 KARAEAFAALLFDHSAYVTIRDLATLDRWIADARDTGLVAFDTETTSLDAMQAELVGFSM 420

Query: 412 STLDQKDDTSF-KVETIFIDLSVH------TSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
           +  D   D S  K+   ++ L+                    ++ L  LK   E+E  LK
Sbjct: 421 AIADNVADPSGTKIRAAYVPLAHKNGVGDLLGGGLAENQVPMRDALPRLKALLEDESVLK 480

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521
           +  N+KYD L+L RYGI  + F+D ML+SYVLD+G  +H +  +++K+L +     K++ 
Sbjct: 481 VAQNLKYDYLLLKRYGIETKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVA 540

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            S ++++  D +   +   +A E+++V L+LWL+L+P+L    L  VYERL++P++ V++
Sbjct: 541 GSGRANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLA 600

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K+    
Sbjct: 601 RMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMGLAG 660

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           G+KTKTGQW T+A  LE +      + + I++WRQL+K+KSTY D+LP +++  T+RVHT
Sbjct: 661 GSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHT 720

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+LAH+
Sbjct: 721 SYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVLAHV 780

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL
Sbjct: 781 AEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQL 840

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S+R 
Sbjct: 841 SIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRA 900

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEITT 939
            NERAAINAPIQGSAAD+ RRAMI +  +L +  L    +MLLQ+HDEL+FEV +E++  
Sbjct: 901 FNERAAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVEDEDVDK 960

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           A  IIV  ME A +P + +RVPLKV+ + + NW E +
Sbjct: 961 AMPIIVSVMENATMPALEMRVPLKVDARAATNWDEAH 997


>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
 gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
          Length = 971

 Score = 1043 bits (2696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/989 (46%), Positives = 656/989 (66%), Gaps = 31/989 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS++I+RA++A P L+RK DGLPV A++GFCNMLWKL++ SR  ++   
Sbjct: 1   MKKGDHLFLVDGSAYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLVEESRDTNVGAV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFRNE+Y +YKANR + PE L PQ  L+R A +AF +P IE +G+EA
Sbjct: 61  PTHFAVIFDYSSTTFRNELYSEYKANREEPPEDLRPQFGLIRDAVRAFDLPCIEKEGYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   A   G  VTI+S+DKDLMQLV P   LYD +K++++  + V +K+G+ PE
Sbjct: 121 DDLIATYATQAVAAGGDVTIVSSDKDLMQLVGPRVILYDQMKDKRLGPDEVKEKFGVYPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GD+ DN+PGIPGIG KTAA LL+EYG LE +L  A+ IKQ KRREN++E+A
Sbjct: 181 KMIDLQALVGDTSDNVPGIPGIGPKTAAQLLEEYGTLEELLERATEIKQNKRRENLIEFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             ARLS+KLV L  + P+   L+ L + + +G +L++FLKA+EFT L  RVA T D DA+
Sbjct: 241 AQARLSKKLVTLDCETPLDTELDDLYIHEPDGEKLVAFLKAMEFTTLTRRVAATLDTDAS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS--EQTPQKLFLERL 355
            +E   L+I                +   +     +  +  S  +S    TPQ+L  +  
Sbjct: 301 EVESAKLEI----------------EDAPRGPDLDAAKNPASPGDSVFPATPQRLAAKLK 344

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +   I+  +Y  I +   + +W+ +    G  +F   T  + A+    + ++++   
Sbjct: 345 DDAAGQAIDRSAYVTIRDIDTLNRWLDRARDRGVMAFDTETSELSAYKGHLVGVSMAITP 404

Query: 416 QKDDTSFKVETIFID---LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             +     +  +  D   L+   S ++ G      E L  LK   E++  LKIG N+KYD
Sbjct: 405 G-EAAYVPLGHVAADADLLTDPDSAEALGGQIPMDEALVALKDVLEDKSILKIGQNVKYD 463

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLD--SGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527
            LV+ ++GI+M   +D ML+SY LD  SG + H +  +++++L +     KE+  S +S+
Sbjct: 464 LLVMLQHGIAMTPIDDTMLISYALDASSGLAGHGMDELSERFLGHKPISYKELCGSGRSA 523

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            PI  +   +V E+A E+++V L++W +L+P+L  E L HVYERL++P+  V+++ME  G
Sbjct: 524 KPIAAVEIDRVTEYASEDADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRG 583

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I +D+ +L ++S   ++   +LE+ I  ++GE+FN  SPKQLG+ILF KL  P G KTK+
Sbjct: 584 IMVDRQILSRLSGNFAQKQAALEDEIAKMAGEEFNPGSPKQLGEILFGKLGLPGGKKTKS 643

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQW T A+ LE +    + + + +++WRQL+K+K TY D+LP+H+++   R+HT +S+AS
Sbjct: 644 GQWSTDARVLEDLAAEGHELPRRVVDWRQLTKLKGTYTDTLPHHMDE-NGRIHTSFSMAS 702

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S EPNLQNIP++T+ G+ IR AF++P  KKL+SADYSQIELRILAHIA I  L
Sbjct: 703 TTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPKGKKLLSADYSQIELRILAHIADIPQL 762

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F+N +DIH M A+E+F V +E + P +RR AK INF IIYGIS F LA QL IPR E
Sbjct: 763 KDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINFGIIYGISAFGLANQLAIPREE 822

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YIKRYF RFPGI +Y++KTK F +++GYVET+FGRR HY +I +    IR+ NERAA
Sbjct: 823 AGQYIKRYFERFPGIRDYMDKTKAFAKKHGYVETLFGRRAHYPDITAKNPQIRSFNERAA 882

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI RRAM+ +  +L D  L+  MLLQ+HDELVFEV E+EI    +++ + 
Sbjct: 883 INAPIQGTAADIIRRAMVRMEGALADANLSAMMLLQVHDELVFEVEEDEIDETIEVVTNI 942

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A  P++ L VPL+V  K + NW+E +
Sbjct: 943 MEAAASPRVILSVPLEVEAKAALNWEEAH 971


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score = 1042 bits (2694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/982 (46%), Positives = 641/982 (65%), Gaps = 21/982 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN---SRKESI 57
           + + +HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNMLWK++Q      +   
Sbjct: 14  LTENDHLILIDGSTFIFRAYHALPPLTRKPDGLPVGAVSGFCNMLWKMMQEGPTKEEGDE 73

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD    TFRN+ YP+YKA+RP  PE L PQ  L+R AT+AFG+PAIE QG+EA
Sbjct: 74  PTHFAVIFDKSGKTFRNDFYPEYKAHRPPPPEDLRPQFGLIRQATRAFGVPAIEQQGYEA 133

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   AE +G  VTI+S DKDLMQLV+    + DT+K + I    V +K+G+ PE
Sbjct: 134 DDLIATYARQAEAQGARVTIVSGDKDLMQLVTDKIGMVDTMKNKIIGKPEVFEKFGVGPE 193

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K+V +Q+L GDS+DN+PG+PGIG KTAALL+ E+G+L+ +L  A  IKQKKRREN++E+A
Sbjct: 194 KVVEVQSLAGDSVDNVPGVPGIGLKTAALLINEFGDLDTLLEQAETIKQKKRRENLIEFA 253

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E AR+S++LV L   VP+  P+E   + D +G + + FLKA+ FT L  +VA        
Sbjct: 254 EQARISKRLVQLEEAVPVETPVEDFSVCDVDGAQAVGFLKAMGFTSLTKKVADKTGAVLE 313

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           NIE   + I   E+     E   D    ++   +              T   L      +
Sbjct: 314 NIEAADVVIEGWESTAKPAEQAEDSAGELEGKAW--------------TAAPLAENVAAE 359

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +S  PI+N +Y  +   + +++W+ +   +G  +    TD ++A  S  + +++S    K
Sbjct: 360 ISALPIDNSAYETVSTVERLKEWIAEAYEVGYVAVDTETDALNAMESGLVGVSLSCTPGK 419

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +  +  +  +              E ++ LK   E+   LKI  N+KYD LVL 
Sbjct: 420 -ACYIPLAHVDGEGDLLGGGALLEGQIPLAEAITLLKPMLEDPAVLKIAQNMKYDWLVLK 478

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           RYG+ M  F+D ML+SY LD+G   + +  ++Q+WL++     KE+  S KS I  DK+ 
Sbjct: 479 RYGVEMAPFDDTMLLSYALDAGMGGNGMDELSQRWLNHTPIPFKEVCGSGKSQISFDKVP 538

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+LW +L+P+L  E++  VYERL++PM+  +++ME  GI ID+ +
Sbjct: 539 LDKATAYAAEDADVTLRLWKILKPRLAAEEMTVVYERLERPMVATLAKMERRGISIDRQM 598

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  +S E ++    LE  I+D++GE FN+ SPKQLG+ILF K+  P G KTKTG W T+A
Sbjct: 599 LSLLSGEFAQGAARLESEIHDVAGEIFNVGSPKQLGEILFGKMGLPGGKKTKTGAWSTSA 658

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+ +    + +   I+EWRQLSK+KSTY D+LP+ IN+ T RVHT +SLAST TGRL+
Sbjct: 659 SVLDDLAAQGHELPSKIVEWRQLSKLKSTYTDALPSFINQETGRVHTSFSLASTSTGRLS 718

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPN+QNIPI+T  G+KIR+AFI+   KKLISADYSQIELR+LAH+A I  L Q F + 
Sbjct: 719 SSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISADYSQIELRVLAHMADIPQLKQAFADG 778

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIH M A+E+FGV IE + P +RR AK INF IIYGIS F LA QL I R EA DYIK 
Sbjct: 779 LDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAFGLANQLGIARGEAGDYIKT 838

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E+TK FV  NGYVETIFGRR HY ++N+   ++R   ERAAINAPIQG
Sbjct: 839 YFERFPGIKDYMEETKKFVHANGYVETIFGRRAHYPDVNTKNPNMRQFYERAAINAPIQG 898

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI RRAM+ + + LE   L  +MLLQ+HDEL+FE+PE+++    ++++ +MEKA  P
Sbjct: 899 SAADIIRRAMVRMDEVLETANLDAQMLLQVHDELIFELPEDQVDETKKLVIATMEKATEP 958

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            + L VPLKV  + ++NW+E +
Sbjct: 959 ALQLSVPLKVEAEAADNWEEAH 980


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score = 1039 bits (2687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/999 (48%), Positives = 663/999 (66%), Gaps = 23/999 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
            M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R   +   
Sbjct: 18   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 77

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE QGFEA
Sbjct: 78   PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETQGFEA 137

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
            DDIIATY   AE  G  VTI+S+DKDLMQLVSP   +YD++K+++I I  VI+KWG+PPE
Sbjct: 138  DDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVIEKWGVPPE 197

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   
Sbjct: 198  KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 257

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            + ARLSR LV LR DVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   +CDA 
Sbjct: 258  DMARLSRDLVRLRIDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEACNCDAG 317

Query: 298  NIEPVVLDINTTE--------NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
             IEP ++ +   E                    D + ++      +   + +    +P  
Sbjct: 318  AIEPAIVRVEWGETARGPDLDAAAPEPVAGGIPDVSGESVPVPPRAKAKTAVEGAFSPAD 377

Query: 350  LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
            L   R +  +  P ++ +Y  I +   + +W+      G  +F   T ++DA  ++ +  
Sbjct: 378  LAKARAEVFATLPFDHSAYVTIRDLATLDRWIADARVTGLVAFDTETTSLDAMQAELVGF 437

Query: 410  AISTLDQ-KDDTSFKVETIFIDLSVH------TSQDSTGKNTLTKEILSYLKKFFENEHF 462
            +++  D   D T  K+   ++ L                     ++ L  LK   E+E  
Sbjct: 438  SLAIADNTADPTGTKIRAAYVPLVHKNGVGDLLGGGLAENQIPMRDALPRLKALLEDEAV 497

Query: 463  LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519
            LK+  N+KYD L+L RYGI  R F+D ML+SYVLD+G  +H +  +++K+L +     K+
Sbjct: 498  LKVAQNLKYDYLLLKRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKD 557

Query: 520  ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            +  S K+++  D +   +   +A E++ V L+LWL+L+P+L    L  VYERL++P++ V
Sbjct: 558  VAGSGKANVTFDLVDIDRATHYAAEDAEVTLRLWLVLKPRLAAAGLTSVYERLERPLLPV 617

Query: 580  VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
            +++ME  GI +D+ +L ++S E++++   LE+ IY L+GE+FN+ SPKQLGDILF K+  
Sbjct: 618  LARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERFNIGSPKQLGDILFGKMGL 677

Query: 640  PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
              G+KTKTGQW T+AQ LE +      + + I++WRQ++K+KSTY D+LP +++  T+RV
Sbjct: 678  SGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRV 737

Query: 700  HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
            HT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+LA
Sbjct: 738  HTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPRHKLISADYSQIELRVLA 797

Query: 760  HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            H+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA 
Sbjct: 798  HVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLAN 857

Query: 820  QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S+
Sbjct: 858  QLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSV 917

Query: 880  RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEI 937
            R  NERAAINAPIQGSAAD+ RRAMI +  +L +  L    +MLLQ+HDEL+FEV +E++
Sbjct: 918  RAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRMLLQVHDELIFEVEDEDV 977

Query: 938  TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              A  +IV  ME A +P + +RVPL+V+ + + NW E +
Sbjct: 978  EKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDEAH 1016


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
          Length = 968

 Score = 1039 bits (2687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/982 (48%), Positives = 663/982 (67%), Gaps = 20/982 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+  +HLFLVDGSS+I+RA++A P L RK DGLPV A++GFCNMLW+LL ++R  ++   
Sbjct: 1   MKINDHLFLVDGSSYIFRAYHALPPLKRKKDGLPVGAVSGFCNMLWRLLCDARNTAVGLT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFD+ + TFR +IYP+YKANR   P+ L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDHSSHTFRKQIYPEYKANRATPPDDLIPQFSLIRQATKAFNVPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY ++A + G   TIIS+DKDLMQLV+    LYD +K++ I +  V++KWG+ P+
Sbjct: 121 DDLIATYAHLATQVGAKTTIISSDKDLMQLVNAHVSLYDGMKDKHIGVAEVVEKWGVTPD 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV LQALTGD +DNIPGIPGIG KTAA LL ++G+L+ +L + S IKQ KRRENI  Y 
Sbjct: 181 KMVDLQALTGDPVDNIPGIPGIGPKTAAQLLNQFGSLDLLLQHVSEIKQTKRRENIQTYG 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +   +SR LV L+TDVPI   L+  ILE  +GPRLI+FLKA+EFT L  RVA   +CDA 
Sbjct: 241 KQTEISRVLVKLKTDVPIDNDLDSFILEPQDGPRLIAFLKAMEFTTLTRRVAEATECDAT 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            IE   ++   TE            D  +            S  +SE  PQ L  +R ++
Sbjct: 301 IIEACDVETEWTETVHGPDLDVQKADAAL------------SHTSSENCPQFLAQKRKEQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+Y  +++   +++W+ + E  G  SF   T ++D   +K +  +++    K
Sbjct: 349 AFTQVITRDAYETLLDEDILKKWLLEAEEQGYFSFDTETTSLDPMQAKLVGFSLALQPNK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +E I     +   +   G    T+  L+ LK   EN+  LKIG N+KYD LV+ 
Sbjct: 409 -AAYIPLEHIEGGNDLFGGERIVG-QIETQRALALLKPILENQAVLKIGQNMKYDWLVMR 466

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +Y I++R F+D ML+SYVLD+G S+H +  ++++WL +T    K +    K  +   ++ 
Sbjct: 467 QYDITIRSFDDTMLLSYVLDAGISTHGMDVLSERWLGHTPIAYKNLTCDGKKIVSFAQVD 526

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q   +A E++++ L+LW +L+P+L+ + +  +YERLD+P+I+V+++ME  GI +D+ +
Sbjct: 527 LKQATLYAAEDADITLRLWQVLKPQLVAQGMTKIYERLDRPLIEVLARMEERGILVDRQI 586

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  +S E+++  LSLEE IY L+GE+FN++SPKQLGDILF+K+  P GAKTK GQW T+A
Sbjct: 587 LSCLSGELAQAALSLEEEIYQLAGEQFNIASPKQLGDILFSKIGLPGGAKTKGGQWSTSA 646

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE++    + + + I++WRQ++K+KSTY D+LP++I+ +T RVHT YSLA+T TGRL+
Sbjct: 647 QILEELAAEGHMLPRKIVDWRQIAKLKSTYTDALPSYISPKTGRVHTNYSLATTSTGRLS 706

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPI+T  G+KIR AFI+     L+SADYSQIELR+LAHIA IT L + F   
Sbjct: 707 SSEPNLQNIPIRTIEGRKIRTAFIASEGCLLLSADYSQIELRLLAHIADITALKEAFAQG 766

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH M A+++FGV IE++S  +RR AK INF IIYGIS F LA QL I R EA+ YI+ 
Sbjct: 767 QDIHAMTASQMFGVAIERMSSDVRRRAKAINFGIIYGISAFGLANQLGISREEASHYIRV 826

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI  Y+E TK F RQ+GYVETIFGRRIHY EI +    +R  NERAAINAPIQG
Sbjct: 827 YFERFPGIQSYMEATKIFARQHGYVETIFGRRIHYPEIKARDRQVRAFNERAAINAPIQG 886

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI RRAMI +  +LE   L+ KMLLQ+HDEL+FE+P+ E      I+   ME A +P
Sbjct: 887 SAADIIRRAMIQMEGALEKEGLSAKMLLQVHDELIFEIPKAESEKTKAIVKKVMENATMP 946

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V + V+ NW E +
Sbjct: 947 ALSLSVPLEVKVMVAQNWDEAH 968


>gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
 gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
          Length = 1033

 Score = 1031 bits (2667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/1006 (44%), Positives = 654/1006 (65%), Gaps = 32/1006 (3%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P LSRK DGL VNA+ GFCNMLWKLL++   ++  +H A
Sbjct: 28   KGDHIFLVDGSSYIFRAYHALPPLSRKSDGLQVNAVLGFCNMLWKLLRDMPPDNRPTHLA 87

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD    TFRNE+YP YKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 88   IIFDKSEATFRNEMYPAYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIA 147

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ +I +  VI+K+G+PP+K+V +
Sbjct: 148  TYVREACEAGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGVAEVIEKFGVPPDKVVEV 207

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ KRRE ++E AE AR+
Sbjct: 208  QALAGDSVDNVPGVPGIGIKTAAQLITEYGDLETLLARAGEIKQPKRREALIENAEKARI 267

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300
            SRKLV+L   V + +PL+ L + + +  +LISFLKA+EFT L  RVA     D +++E  
Sbjct: 268  SRKLVLLDDHVKLDVPLDELAVHEPDARKLISFLKAMEFTTLTRRVADYAQIDPSDVEAE 327

Query: 301  --------PVVLDINTTENKGIAIETEID-RDTTIKTSQFSSLSDQTSKINSEQ------ 345
                    P+  ++      G       D     + ++Q S  S + S   S +      
Sbjct: 328  AALKSSPLPLAGEVGARSATGGGTAASGDLFSEQVPSTQPSPASGRGSAQQSGEGGALNA 387

Query: 346  ------------TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
                        +PQ L   R +   + P++  +Y  I    ++  W+ ++   G  +  
Sbjct: 388  GRGRDGRPGEVLSPQILAARRAETARKIPVDRTAYKTIRTLDELHGWIARIHDAGFVAVD 447

Query: 394  IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
             I  ++D   ++   IA++                 D S   +          +E L  L
Sbjct: 448  AIATSIDPMQAELCGIALALAPNDAAYIPLGHRQTGDGSGLFAAGLAPDQLGAREALDAL 507

Query: 454  KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            K   E+    KIG NIK+  ++L ++GI++R  +D+ LMSY LD+GR SH + ++++  L
Sbjct: 508  KPLLESAGLAKIGFNIKFTAVLLAQHGITLRNIDDLQLMSYALDAGRGSHGLDALSESNL 567

Query: 514  SYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
             +T     E+  S K+ I  D++   +  E+A E ++V L+LW +L+P+L+ E+++ VYE
Sbjct: 568  GHTLHALGELTGSGKAKIGFDQVPIERATEYAGERADVALRLWRVLKPRLVAERMMAVYE 627

Query: 571  RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
             L++P++ V+++ME  GI ID+ +L ++SA+ ++    +E  I +L+GE  N+ SPKQLG
Sbjct: 628  TLERPLVGVLARMERRGISIDRSVLSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLG 687

Query: 631  DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            DILF K+  P G+KTKTG W T+AQ L+++    +   + IL+WRQ+SK++STY D+LPN
Sbjct: 688  DILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPN 747

Query: 691  HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            +++ +TQRVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P  KL+SADY
Sbjct: 748  YVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIASPGYKLVSADY 807

Query: 751  SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            SQIELR+L+ +A++  L + F++ +DIH M A+E+FGV +E +  ++RR AK INF IIY
Sbjct: 808  SQIELRLLSEVAEVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIY 867

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            GIS F LA QL IPR EA  YIKRYF RFPGI  Y+++T++F R +GYVET+FGR+ HY 
Sbjct: 868  GISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRAHGYVETLFGRKCHYP 927

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            +I +   SIR  NERAAINA +QGSAADI RRAM  +  +L + KL+ +MLLQ+HDEL+F
Sbjct: 928  DIKASNPSIRAFNERAAINARLQGSAADIIRRAMGRMEDALAEKKLSAQMLLQVHDELIF 987

Query: 931  EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            EVP++E+     ++ H M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 988  EVPDDEVAATLPVVRHVMQDAPFPAVLLNVPLQVDARAADNWDEAH 1033


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score = 1028 bits (2657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/988 (49%), Positives = 669/988 (67%), Gaps = 32/988 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57
           M+  +HLFLVDGS +++RA+YA P L RK DGLPV A+AG+CNMLWKLL ++R  +   +
Sbjct: 1   MKATDHLFLVDGSGYVFRAYYALPPLKRKKDGLPVGAVAGYCNMLWKLLCDARNTATGIV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAV+FDY + TFR +IYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVVFDYSSDTFRKQIYPQYKANRVMPPEDLIPQFSLIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A K G   TIIS+DKDLMQLV+    LYD +K+  I I  VI+KWG+ PE
Sbjct: 121 DDLIATYAQLATKVGAKTTIISSDKDLMQLVNTHVSLYDGMKDRHIGISEVIEKWGVAPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV LQALTGD  DN+PGIPGIG K AA LL ++G+L+ +L + + +KQ KRRENI  Y+
Sbjct: 181 KMVDLQALTGDPTDNVPGIPGIGPKIAAQLLNQFGSLDLLLQHVTEVKQTKRRENIQAYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A++SR+LV L+TDVPI   L+  ILE  +GPRLI+FLKA+EF  L  RVA    CDAA
Sbjct: 241 EQAKISRELVQLKTDVPIENDLDDFILEPQDGPRLIAFLKAMEFATLTRRVAEATACDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+ + +D+          ++  +RD+  K ++  SL D      SE +PQ+L  +R  +
Sbjct: 301 VIDVLDIDVEWE-------KSGYERDSNFKRAERESLHD-----FSENSPQRLAQKRQDQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+YT I + K +++W+ + +  G  +F   T ++D   +K +  +++   +K
Sbjct: 349 ALSQKITRDTYTTIFDEKTLKEWLSQAQEQGFFAFDTETTSLDPIQAKLVGFSLALQPEK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK------NTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                     ++ L     ++   K         T++ L+ LK   E++  LKIG NIKY
Sbjct: 409 --------AAYVPLEHVEGENDLLKGGRIVSQIETQKALTLLKPILEDQAVLKIGQNIKY 460

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ +YGI +  F+D ML+SY L++G  +H++ +++++WL +     K++  + K   
Sbjct: 461 DWLVMKQYGIVIHCFDDTMLLSYALEAGTLTHNMNALSERWLGHKPIAYKDLTHNGKKIT 520

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              ++   Q   +A E++++ L+LW +L+P+L+ + +  +YERLD+P+I+V+++ME  GI
Sbjct: 521 SFAEVDLKQATLYAAEDADITLRLWQVLKPQLVAQGMTRIYERLDRPLIEVLARMEERGI 580

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S E+++    LEE IY LSGEKFNL+SPKQLGDILF K+  P GAKTK G
Sbjct: 581 LVDRQILLRLSGELAQAAFILEEEIYQLSGEKFNLASPKQLGDILFGKMGLPGGAKTKGG 640

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE++    + + + I++WRQL+K+KSTY D+LP++I  +T RVHT YSLA T
Sbjct: 641 QWSTSAQTLEELAAEGHILPRKIIDWRQLAKLKSTYTDALPSYILPKTGRVHTNYSLAIT 700

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIP++T  G+KIR AF++P    L+SADYSQIELRILAHIA IT L 
Sbjct: 701 STGRLSSSEPNLQNIPVRTAEGRKIRTAFVAPKRHVLLSADYSQIELRILAHIANITALK 760

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH + A++IFGV IE +   +RR AK INF IIYGIS F LA QL + R EA
Sbjct: 761 EAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEA 820

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +YIE TK F RQNGYVETIFGRRIHY EI +    +R+ NERAAI
Sbjct: 821 GRYIQLYFERFPGIKDYIETTKTFARQNGYVETIFGRRIHYPEIKAASPQVRSFNERAAI 880

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI RRAMI +  +LE  KL+ KMLLQ+HDELVFEVPEEE      ++   M
Sbjct: 881 NAPIQGSAADIIRRAMIQMEDALEKEKLSAKMLLQVHDELVFEVPEEESKKTMAVVKKVM 940

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A +P ++L VPL+V + V+ NW E +
Sbjct: 941 ENATMPVLSLSVPLEVKVMVAQNWDEAH 968


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score = 1026 bits (2652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/988 (48%), Positives = 670/988 (67%), Gaps = 32/988 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M++ +HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL + R  +I   
Sbjct: 1   MKENDHLFLVDGSGYIFRAYHALPPLKRKKDGLPVGAVAGFCNMLWKLLCDVRNTAIGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H A+IFDY + TFR EIYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHIAIIFDYSSNTFRKEIYPQYKANRAAPPEELIPQFALIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV+    LYD++K++ I I  VI+KWG+ PE
Sbjct: 121 DDLIATYAQLATQVGAKTTIISSDKDLMQLVNKHVSLYDSMKDKHIGISEVIEKWGVIPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQALTGD  DNIPGIPGIG K AA LL ++G+L+ +L   S +KQ KRRENI  Y+
Sbjct: 181 KMIDLQALTGDPTDNIPGIPGIGPKIAAQLLDQFGSLDLLLQRVSEVKQIKRRENIKTYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A++SR+LV L+TDVPI   L+H ILE  +G RLI+FLKA+EFT L  R+A    CDAA
Sbjct: 241 EQAKISRELVKLKTDVPIDKDLDHFILEPQDGRRLIAFLKAMEFTALTRRIAKETSCDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+ + LDI          ET    D + K +      D      SE +PQ L  +R  K
Sbjct: 301 AIDALELDIEW-------KETTCKTDLSSKENNTVLFHD-----FSENSPQILAQKRKDK 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+Y  I++ + +++W+ + +  G  SF   T +++   +K +  +++    K
Sbjct: 349 ALIQKITRDTYKTILDEEILKEWLLEAQEQGYFSFDTETTSLNPMQAKLVGFSLALQPGK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDSTG------KNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                     ++ L     +D+            T++ L+ LK   EN+  LKIG NIKY
Sbjct: 409 --------AAYVPLEHVAEEDNLLGGGRIVPQIETQKALALLKPILENQAVLKIGQNIKY 460

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ ++ I M  F+D ML+SY L++G S+H +  ++++WL +     K++  SR+  +
Sbjct: 461 DWLVMKQHNIVMCSFDDTMLLSYALEAGISTHGMDVLSERWLGHKPISYKDLTHSRRKIV 520

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              ++   Q   +A E++++ L+LW +L+P+L+ +K+  +YERLD+P+I+++++ME  GI
Sbjct: 521 SFARVDLKQATLYAAEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEERGI 580

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S E+++ +L+L E IY L GEKFN++SPKQLGDILF K+  P G KTK+G
Sbjct: 581 LVDRQILSRLSGELAQTVLNLGEEIYQLVGEKFNIASPKQLGDILFGKMGLPGGTKTKSG 640

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE++    + + + I++WRQL+K+KSTY D+LP++I   T RVHT YSLA+T
Sbjct: 641 QWSTSAQTLEELAAEGHILPRKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLATT 700

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRL+S EPNLQNIP++T  G+KIR AF++     L+SADYSQIELRILAH+A IT L 
Sbjct: 701 LTGRLSSSEPNLQNIPVRTAEGRKIRAAFVASKGHLLLSADYSQIELRILAHVADITALK 760

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH M A+++FGV +E ++ ++RR AK INF IIYGISPF LA+QL I R EA
Sbjct: 761 EAFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPFGLASQLGISRKEA 820

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           +DYI+ YF RFPGI +Y+E+TK F R  GYVETIFGRRIHY EI + K  IR+ NERAAI
Sbjct: 821 SDYIQLYFERFPGIEDYMERTKIFARHYGYVETIFGRRIHYPEIKTDKPQIRSFNERAAI 880

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI RRAMI +  +LE  +L+ KMLLQ+HDEL+FEVP+ E    + +I   M
Sbjct: 881 NAPIQGSAADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESKKTTILIKKVM 940

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A +P ++L VPL+V +  + NW E +
Sbjct: 941 ENATMPALSLSVPLEVKVIAAQNWDEAH 968


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score = 1024 bits (2647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 660/982 (67%), Gaps = 20/982 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+  +HLFLVDGSS+++RA+YA PLL RK DGLPV A+AGFCNMLWKLL ++R  +I   
Sbjct: 1   MKATDHLFLVDGSSYVFRAYYALPLLKRKKDGLPVGAVAGFCNMLWKLLCDARNTAIGIV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAV+FDY + TFR +IYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVVFDYSSDTFRKQIYPQYKANRVAPPEDLIPQFSLIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A K G   TIIS+DKD MQLV+    LYD +K++ I I  V++KW + PE
Sbjct: 121 DDLIATYAQLATKVGAKTTIISSDKDFMQLVNTHVSLYDGMKDKHIGISEVLEKWDVAPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV LQALTGD  DN+PGIPGIG K AA LL ++G+L+ +L   + +KQ KRRENI  Y+
Sbjct: 181 KMVDLQALTGDPTDNVPGIPGIGPKIAAQLLNQFGSLDLLLQRVAEVKQTKRRENIQAYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A++SRKLV L+TDVPI   L+ LILE  +GPRLI+FLK +EF  L  RVA    CDAA
Sbjct: 241 EQAKISRKLVQLKTDVPIENDLDDLILESQDGPRLIAFLKTMEFATLTRRVAEATACDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+ + LD+   E      ++E+ R     +  FS           + TPQ L  +R  +
Sbjct: 301 VIDALDLDVEWVEP-VYGCDSEVKRAERALSHDFS-----------KNTPQVLAQKRKCQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+Y  I + + +++W+ + +  G  +F   T ++D   +K +  +++    K
Sbjct: 349 ALSQTIKRDAYLSIFDEEILKKWLSEAKEQGFFAFDTETTSLDPLQAKLVGFSLALQPGK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++     F                 T++ L+ LK   E++  LKIG NIKYD LV+ 
Sbjct: 409 --AAYVPLEHFEGGGDLLGGGRIVGQIETRKALTLLKPILEDQAVLKIGQNIKYDWLVMK 466

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +YGI +R F+D ML+SY LD+G  +H++ +++++WL +     K++  + K      ++ 
Sbjct: 467 QYGIVIRCFDDTMLLSYALDAGALTHNMDALSERWLGHKPIAYKDLTHNGKKITSFAQVD 526

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q   +A E++++ L+LW +L+P+L+   +  VYERLD+P+++V+++ME  GI +D+ +
Sbjct: 527 LKQATLYAAEDADITLRLWQVLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQI 586

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S E+++    LEE IY L+GEKFNL+SPKQLG ILF K+  P G +TK+GQW T+A
Sbjct: 587 LLRLSGELAQAAFILEEEIYQLAGEKFNLASPKQLGGILFGKMSLPGGTRTKSGQWSTSA 646

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE++    + + + I++WRQL+K+KSTYAD+LP++I  +T R+HT YSLA T TGRL+
Sbjct: 647 QTLEELAAEGHILPRKIIDWRQLAKLKSTYADALPSYILSKTGRIHTNYSLAITSTGRLS 706

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP++T  G+KIR AFI+P    L+SADYSQIELRILAHIA I  L + F   
Sbjct: 707 SSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSADYSQIELRILAHIADIIALKEAFAQG 766

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A+++FGV IE ++  +RR AK INF IIYGIS F LA QL + R EA+ YI+ 
Sbjct: 767 QDIHAITASQMFGVAIEGMNSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEASHYIQL 826

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+E TKNF  +NGYVETIFGRRIHY EI +    +R+ NERAAINAPIQG
Sbjct: 827 YFERFPGIKDYMEMTKNFACRNGYVETIFGRRIHYPEIKAANLQVRSFNERAAINAPIQG 886

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI RRAMI +  +LE  KL+ KMLLQ+HDEL+FEVPE+E      ++   ME A +P
Sbjct: 887 SAADIIRRAMIQMENALEKEKLSAKMLLQVHDELIFEVPEDESERTMALVKKVMENATMP 946

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V +  + NW+E +
Sbjct: 947 VLSLSVPLEVKVMAAQNWEEAH 968


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score = 1023 bits (2644), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/982 (48%), Positives = 657/982 (66%), Gaps = 19/982 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57
           M+  +HLFLVDGS +++RA+YA P L RK DGLPV A+AGFCNMLWKLL ++R  +   +
Sbjct: 1   MKATDHLFLVDGSGYVFRAYYALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTATGIV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR +IYP+YKANR + PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSDTFRKQIYPEYKANRAEPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A K G   TIIS+DKDLMQLV+    LYD +K++ I I  V++KWG+ PE
Sbjct: 121 DDLIATYAKLATKVGAKTTIISSDKDLMQLVNTHVSLYDGMKDKHIGISEVVEKWGVAPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GDS DN+PGIPGIG KTAA LL ++ +L+ +L N + IKQ KRRENI  Y 
Sbjct: 181 KMIDLQALIGDSTDNVPGIPGIGPKTAAQLLDQFDSLDLLLQNVTEIKQTKRRENIQAYR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++SR+LV L+TDVPI   L+  ILE  +GPRLI+FLKA+EF+ L  RVA    CDA 
Sbjct: 241 EQVKISRELVRLKTDVPIDNDLDDFILEPQDGPRLIAFLKAMEFSTLTRRVAEATTCDAT 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+ + +D+   +            D+ IK ++ +SL +      SE +PQ    +R  +
Sbjct: 301 VIDALDIDVEWEKLSHG-------HDSDIKNTERASLHN-----FSENSPQVFAQKRKDQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+YT I++ + ++ W+ + +  G  +F   T ++D   +K +  +++   +K
Sbjct: 349 ALTQKITRDAYTTILDEEILKDWLSQAQEQGFFAFNTETTSLDPMQAKLVGFSLALQPEK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +E                    T++ L+ LK   E+   LKIG NIKYD LV+ 
Sbjct: 409 -AAYIPLEHFDEGEEDLLRGGHIASQIETRKALALLKPILEDSSVLKIGQNIKYDWLVMK 467

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +Y I +  F+D ML+SY  D+G  +H++  ++++WL +     K++  + K      ++ 
Sbjct: 468 QYDIIISSFDDTMLLSYAFDAGILTHNMDDLSERWLKHKPISYKDLTHNGKKITSFAQVD 527

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q   +A E +++ L+LW +L+P+L+   +  +YERLD+P+++V+++ME  GI ID+ +
Sbjct: 528 LKQATLYAAERADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERGILIDRQI 587

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S E+++  L LEE IY  + EKFNL+SPKQLGDILF K+    GAKTK GQW T+A
Sbjct: 588 LLRLSGELAQAALILEEEIYKQADEKFNLASPKQLGDILFGKMGLSGGAKTKGGQWSTSA 647

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE++    + + + I+EWRQL+K+KSTY D+LP++I  +T RVHT YSLA T TGRL+
Sbjct: 648 QTLEELAAEGHVLPRKIIEWRQLAKLKSTYTDALPSYIFSKTGRVHTNYSLAITSTGRLS 707

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP++T  G+KIR AFI+P    L+SADYSQIELRILAHIA I  L + F   
Sbjct: 708 SSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKALKEAFAKG 767

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A+++FGV IE +   +RR AK INF IIYGIS F LA QL I R EA  YI+ 
Sbjct: 768 HDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAFGLANQLGISRQEAGRYIQL 827

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+EKTK F R+NGYVETIFGRRIHY EI +    IR++NERAAINAPIQG
Sbjct: 828 YFERFPGIKDYMEKTKIFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAINAPIQG 887

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI RRAMI +  +L++ KL+ KMLLQ+HDEL+FEVPEEE      ++ + ME A +P
Sbjct: 888 SAADIIRRAMIQMENALKEEKLSAKMLLQVHDELIFEVPEEESKKTMAVVKNVMENATMP 947

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            ++L VPL+V +  + NW E +
Sbjct: 948 ILSLSVPLEVKVMTAQNWDEAH 969


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score = 1022 bits (2642), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/988 (48%), Positives = 664/988 (67%), Gaps = 32/988 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57
           M+  +HL LVDGS +++RA+YA P L RK DGLPV A+AGFCNMLWKLL ++R  +   +
Sbjct: 1   MKATDHLLLVDGSGYVFRAYYALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTATGIV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR +IYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSDTFRKQIYPQYKANRVDPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A K G   TIIS+DKDLMQLV+    LYD +K++ I I  VI+KWG+ PE
Sbjct: 121 DDLIATYAQLATKVGAKTTIISSDKDLMQLVNKHVSLYDGMKDKHIGISEVIEKWGVTPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GDS DN+PGIPGIG KTAA LL ++G+L+ +L   + IKQ KRRENI  Y+
Sbjct: 181 KMIDLQALIGDSTDNVPGIPGIGPKTAAQLLNQFGSLDLLLQRVTEIKQTKRRENIQAYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++SR+LV L+TDVPI   L+  ILE  +GPRLI+FLKA+EF+ L  RVA    CDAA
Sbjct: 241 EQVKISRELVRLKTDVPIDSDLDDFILEPQDGPRLIAFLKAMEFSTLTRRVAEETTCDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+ + +D+   +            DT IK  + +SL +      SE +PQ    +R  +
Sbjct: 301 VIDALDVDVEWEKLSHG-------HDTDIKNIEKTSLHN-----FSENSPQVFAQKRKDQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+YT I++ + +++W+ + +  G  +F   T ++D   +K +  +++    K
Sbjct: 349 ALTQKITRDTYTTILDEEILKEWLSQAQEQGFFAFDTETTSLDPMQAKLVGFSLALQPGK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK------NTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                     +I L     ++   K         T++ L+ LK   E+   LKIG NIKY
Sbjct: 409 --------AAYIPLEHFEGKEDLLKGGRIASQIETRKALALLKPLLEDSAVLKIGQNIKY 460

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ +Y I +R F+D ML+SY LD+G  +H++  ++++WL +     K++  + K   
Sbjct: 461 DWLVVKQYDIVIRSFDDTMLLSYALDAGALTHNMDDLSERWLEHKPIAYKDLTHNGKKIT 520

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              ++   Q   +A E++++ L+LW +L+P+L+   +  +YERLD+P+++V+++ME  GI
Sbjct: 521 SFAQVDLKQATLYAAEDADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERGI 580

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S E+++  L LEE IY  + EKFNL+SPKQLGDILF K+  P GAKTK G
Sbjct: 581 LVDRQILLRLSGELAQAALILEEEIYKQADEKFNLASPKQLGDILFDKMGLPGGAKTKGG 640

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE+++   + + + I+EWRQL+K+KSTYAD+LP++I  +T RVHT YSLA T
Sbjct: 641 QWSTSAQTLEELSAEGHTLPRKIIEWRQLAKLKSTYADALPSYILPKTGRVHTNYSLAIT 700

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIP++T  G+KIR AFI+P    L+SADYSQIELRILAHIA I  L 
Sbjct: 701 STGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKALK 760

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH + A+++FGV IE +   +RR AK INF IIYGIS F LA QL I R EA
Sbjct: 761 EAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAFGLANQLGISRQEA 820

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFPGI +Y+EKTK+F R+NGYVETIFGRRIHY EI +    IR++NERAAI
Sbjct: 821 GRYIQLYFERFPGIKDYMEKTKSFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAI 880

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI RRAMI +  +L++  L+ KMLLQ+HDEL+FEVPEEE      ++   M
Sbjct: 881 NAPIQGSAADIIRRAMIQMEDALKEENLSAKMLLQVHDELIFEVPEEESKKTMAVVKDVM 940

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A +P ++L VPL+V +  + NW E +
Sbjct: 941 ENATMPVLSLSVPLEVKVMTAQNWDEAH 968


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score = 1021 bits (2640), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/988 (48%), Positives = 657/988 (66%), Gaps = 32/988 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+  +HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL ++R  +I   
Sbjct: 1   MKANDHLFLVDGSGYIFRAYHALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTAIGIV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H A+IFDY + TFR +IYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHVAIIFDYSSNTFRKQIYPQYKANRTAPPEDLVPQFALIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV+    LYD +K++ I I  V++KWG+ PE
Sbjct: 121 DDLIATYAQLATQVGAKTTIISSDKDLMQLVNTHVSLYDGMKDKHIGISEVMEKWGVMPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KMV  QALTGD  DNIPG+PGIG K AA LL ++G+LE +L   + IKQ KRRENI  Y+
Sbjct: 181 KMVDFQALTGDPTDNIPGVPGIGPKIAAQLLDQFGSLELLLQRVTEIKQIKRRENIQAYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A++SR+LV L+ DVPI   L+H ILE  +GPRLI+FLKA+EFT L  RVA    CDAA
Sbjct: 241 EQAKISRELVKLKKDVPIDKSLDHFILEPQDGPRLIAFLKAMEFTALTRRVAKETSCDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+ + +DI   E    A       D  +K        D      SE +PQ L  +R  +
Sbjct: 301 VIDALDIDIEWEETTCEA-------DLNVKEDNKVLFHD-----FSENSPQILAQKRKDQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+Y  I++ + +++W+ + E  G  +F   T ++D   +K +  +++    K
Sbjct: 349 TLTQKIARDAYKTILDEEILKEWLLEAEKQGYFAFDTETTSLDPMQAKLVGFSLALQPGK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK------NTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                     +I L     +D             T++ L+ LK   EN+  LKIG NIKY
Sbjct: 409 --------AAYIPLEHTAGEDGLLAGGRIVPQIETQKALALLKPILENQAILKIGQNIKY 460

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ +Y I MR F+D ML+SY L++G S+H I  ++++WL +     K++  + K  +
Sbjct: 461 DWLVMKQYDIVMRSFDDTMLLSYALEAGISTHGIDVLSERWLGHKPITYKDLTYNGKKIV 520

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              +I   Q   +A E++++ L+LW +L+P+L+ +++  +YERLD+P+I+++++ME  GI
Sbjct: 521 SFAQIDLKQATLYAAEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGI 580

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S E+++  L+LEE IY L GE+FN++SPKQLGDILF K+  P GAKTK G
Sbjct: 581 LVDRQILSRLSGELAQAALNLEEEIYQLVGERFNIASPKQLGDILFGKMGLPGGAKTKNG 640

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE++    + + + I++WRQL+K+KSTY D+LP++I  +T RVHT YSLA+T
Sbjct: 641 QWSTSAQTLEELATEGHILPRKIVDWRQLAKLKSTYTDALPSYILTKTGRVHTNYSLATT 700

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIP +T  G+KIR AFI+     L+SADYSQIELRILAH A I  L 
Sbjct: 701 STGRLSSSEPNLQNIPARTAEGRKIRAAFIASEGHILLSADYSQIELRILAHFADIGALK 760

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH M A+++FGV +E +   +R+ AK INF IIYGIS F LA QL I R EA
Sbjct: 761 EAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINFGIIYGISSFGLANQLGISRKEA 820

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +YI+ YF RFPGI +Y+EKTK F R +GYVETIFGRRIHY EI +    IR  NERAAI
Sbjct: 821 GNYIRLYFERFPGIEDYMEKTKMFARHHGYVETIFGRRIHYPEIKTANPQIRAFNERAAI 880

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI RRAMI V  +LE  KL+ KMLLQ+HDEL+FEV + E T  + +I   M
Sbjct: 881 NAPIQGSAADIIRRAMIQVENALEKEKLSAKMLLQVHDELIFEVSKSESTKTAILIKKVM 940

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A +P ++L VPL+V +  + NW E +
Sbjct: 941 ENATMPALSLSVPLEVKVIAAQNWNEAH 968


>gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
 gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
          Length = 1032

 Score = 1019 bits (2634), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/1004 (43%), Positives = 653/1004 (65%), Gaps = 32/1004 (3%)

Query: 5    NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL+    ++  +H A+I
Sbjct: 29   DHIFLVDGSSYIFRAYHALPPLTRKSDGLQVNAVLGFCNMLWKLLREMPPDNRPTHLAII 88

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD    TFRN++YPDYKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IATY
Sbjct: 89   FDKSEHTFRNQLYPDYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIATY 148

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               A + G   TI+S+DKDLMQLV+    +YDT+K+ +I I  VI+K+G+PPEK+V +QA
Sbjct: 149  VREACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGIAEVIEKFGVPPEKVVEVQA 208

Query: 185  LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            L GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++E AE AR+SR
Sbjct: 209  LAGDSVDNVPGVPGIGIKTAAQLINEYGDLDTLLARAGEIKQPKRREALIENAEKARISR 268

Query: 245  KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE---- 300
            +LV+L   V + +PL+ L + + +  +LISFLKA+EFT L  RVA     D +++E    
Sbjct: 269  QLVLLDDKVKLDVPLDELAVHEPDARKLISFLKAMEFTTLTRRVADYSQIDPSDVEAEAA 328

Query: 301  ----PVVLDINTTENKGIAIETEIDRD---TTIKTSQFSSLSDQTSKINSEQ-------- 345
                P+ L             T    D     + + Q S    + S  +S +        
Sbjct: 329  LKSSPLPLAGEVGARSATGGGTSTGGDLFSGQVPSPQPSPAGGRGSAPHSAEGGPLNAGR 388

Query: 346  ----------TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395
                      +PQ L  +R +   + P++  +Y  +    ++Q W+ ++   G+ +   I
Sbjct: 389  GRDGQPGEVLSPQILAAKRAEAARKIPVDRTAYKTVRTRDELQGWIARIHDAGAFAVDAI 448

Query: 396  TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
              ++D   ++   IA+S                 D S   +          +++L  L+ 
Sbjct: 449  ATSIDPMQAELCGIALSLGPNDACYIPLGHRQTGDGSGLFAAGLAPDQLGARDVLDALRP 508

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              ++    KIG NIK+  ++L ++G+++R  +D+ L+SYVLD+GR SH + ++++  L +
Sbjct: 509  LLDSAGLAKIGFNIKFTAVLLAQHGVTLRNIDDVQLISYVLDAGRGSHGLDALSESNLGH 568

Query: 516  TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            T   +     S K+ I  D++   +  E+  E S+V L+LW +L+P+L+ E+++ VYE L
Sbjct: 569  TLHVLGALTGSGKAKIAFDQVPIDRATEYGGERSDVALRLWRVLKPRLVAERMMAVYETL 628

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P++ V+++ME  GI ID+ +L ++SA+ ++    +E  I +L+GE  N+ SPKQLGDI
Sbjct: 629  ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDI 688

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF K+  P G+KTKTG W T+AQ L+++    +   + IL+WRQ+SK++STY D+LP ++
Sbjct: 689  LFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPTYV 748

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            + +TQRVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P  +L+SADYSQ
Sbjct: 749  HPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHRLVSADYSQ 808

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+L+ +A +  L + F++ +DIH M A+E+FGV +E +   +RR AK INF IIYGI
Sbjct: 809  IELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSDIRRRAKAINFGIIYGI 868

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL IPR EA  YIKRYF RFPGI  Y+++T++F R +GYVET+FGR+ HY +I
Sbjct: 869  SAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRTHGYVETLFGRKCHYPDI 928

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             +   SIR  NERAAINA +QGSAADI RRAM+ +  +L + KLA +MLLQ+HDEL+FEV
Sbjct: 929  KASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLAAQMLLQVHDELIFEV 988

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            PE+E+T    ++ H M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 989  PEDEVTATLPVVSHVMQDAPFPAVILNVPLQVDARAADNWDEAH 1032


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score = 1018 bits (2632), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 562/984 (57%), Gaps = 68/984 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIIQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIEPLHKMVEAMGLPILVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEKEG +V I + DKD+ QLV+P   L +T+    +  E V +K+G+PPE ++   
Sbjct: 121 LALQAEKEGRSVLISTGDKDMAQLVTPYITLINTMTNTILGPEGVSEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+L++I      I        K     + ++ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGSLDDIYARLDEIATLSFRGAKTLSGKMAQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV +      L +   +   L++     EF + ++ V      +  
Sbjct: 241 EVAYLSYQLATIKTDVELDKTCLELAVTAPDSDELLALFSRYEFKRWLSDVQNGSWLEGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + +                        T+  ++ +++S   + +N               
Sbjct: 301 SQKSAA---------------------TVSAAKSATISSAPAAVN--------------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ ++Y  I++ K + +W+ KL+   + SF   TD +D      + ++ +    +
Sbjct: 325 -----ISPENYQTILDRKSLDEWIVKLKQAPAFSFDTETDGLDTLTVNLVGMSFAIAVGE 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            +    VE  ++ L  H   D+  +     E+L+ LK   E+ +  KIG N+K+D+ VL 
Sbjct: 380 SE----VEAAYLPLG-HDYLDAP-EQLDLHEVLAALKPLLEDANLPKIGQNLKFDRGVLA 433

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY +++ G   D ML SYVL+S    HD+ S+A + L Y     +EI    K  +  ++I
Sbjct: 434 RYDVALNGIVFDTMLESYVLNSVSGRHDMDSLADRHLGYKTTTFEEIAGKGKKQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +  ++A E+++V L+L  ++ P++  V  L  V++ ++ P++ V+S++E TG+ ID 
Sbjct: 494 PLEEAAKYAAEDADVTLRLHQVMYPQIDSVPTLKSVFQNIEMPLVPVLSRIERTGVLIDA 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L + S EI+  L  LE+  Y+L+GE+FNL+SPKQL  ILF KL  P   KT  G   T
Sbjct: 554 QTLAEHSTEITARLGELEKAAYELAGEEFNLASPKQLQVILFEKLNLPVLKKTPNGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE++   ++ + + ILE R L+K+KSTY D LP  +N  T+RVHT Y  A T TGR
Sbjct: 614 NEEVLEEL-ADNHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTKRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH+++   L + F 
Sbjct: 673 LSSRDPNLQNIPVRNDEGRRIRQAFIAPEGYCIMAADYSQIELRIMAHLSQDKGLLEAFA 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAE+FGV +E+V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 733 QGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFGLIYGMSAFGLSRQLSIPRGEAQRYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    ++G+VET+ GRR++  +I S  +  R  +ER AINAP+
Sbjct: 793 DLYFERYPGVLAYMERTRQQAAEHGFVETLEGRRLYLPDIKSRNAMRRKASEREAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI+V   +   +   +M++Q+HDELVFEV E E+ TA Q I   MEK  
Sbjct: 853 QGTAADIIKLAMIAVDNWIVSEQPNVRMIMQVHDELVFEVHESELATAEQKISELMEK-- 910

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              + L VPLKV++ +  NW + +
Sbjct: 911 --SMQLDVPLKVDVGIGINWDQAH 932


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score = 1017 bits (2630), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/988 (48%), Positives = 673/988 (68%), Gaps = 32/988 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M++ +HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL ++R  +I   
Sbjct: 1   MKENDHLFLVDGSGYIFRAYHALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTAIGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H A+IFDY + TFR EIYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHIAIIFDYSSNTFRKEIYPQYKANRAAPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV+    LYD++K++ I I  VI+KWG+ PE
Sbjct: 121 DDLIATYAQLATQVGAKTTIISSDKDLMQLVNKHVSLYDSMKDKHIGISEVIEKWGVMPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQALTGD  DNIPGIPGIG K AA LL ++G+L+ +L   + +KQ KRRENI  Y+
Sbjct: 181 KMIDLQALTGDPTDNIPGIPGIGPKIAAQLLDQFGSLDLLLQRVTEVKQIKRRENIQTYS 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A++SR+LV L+TDVP+   L+H ILE  +GPRLI+FLKA+EFT L  RVA    CDAA
Sbjct: 241 EQAKISRELVKLKTDVPVDKNLDHFILEPQDGPRLIAFLKAMEFTALTRRVAKETACDAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+ + LDI          ET    D + K +      D       E +PQ L  +R  +
Sbjct: 301 VIDALELDIEW-------KETTYKTDLSSKENNTVLFHDFF-----ENSPQILAQKRKDQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I  D+Y  I++ + +++W+ + +  G  SF   T ++D   +K +  +++    K
Sbjct: 349 ALIQKIARDAYKTILDEEILKEWLLEAQEQGYFSFDTKTISLDPMQAKLVGFSLALQPGK 408

Query: 418 DDTSFKVETIFIDLSVHTSQDSTG------KNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                     ++ L     +++            T++ L+ LK   EN+  LKIG NIKY
Sbjct: 409 --------AAYVPLEHVAEEENLLGGGRIVPQIETQKALALLKPILENQAVLKIGQNIKY 460

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           D LV+ +Y I M  F+D ML+SY L++G S+H +  ++++WL +     K++  S +  +
Sbjct: 461 DWLVMKQYNIVMCSFDDTMLLSYALEAGISTHGMDVLSKRWLGHKPISYKDLTHSGRKIV 520

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              ++   Q   +A E++++ L+LW +L+P+L+ +K+  +YERLD+P+I+++++ME  GI
Sbjct: 521 SFAQVDLKQATLYAAEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEERGI 580

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+ +L ++S E+++  L+LEE IY L GEKFN++SPKQLGDILF K+    GAKTK+G
Sbjct: 581 LVDRQILSRLSGELAQAALNLEEEIYQLVGEKFNIASPKQLGDILFGKMGLLGGAKTKSG 640

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           QW T+AQ LE++    + + + I++WRQL+K+KSTY D+LP++I   T RVHT YSLA+T
Sbjct: 641 QWSTSAQTLEELAAEGHILPRKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLATT 700

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRL+S EPNLQNIP++T  G+KIR+AF++     L+SADYSQIELRILAH+A IT L 
Sbjct: 701 LTGRLSSSEPNLQNIPVRTAEGRKIRKAFVASKGYLLLSADYSQIELRILAHVADITALK 760

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH M A+++FGV +E ++ ++RR AK INF IIYGISPF LA+QL I R EA
Sbjct: 761 EAFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPFGLASQLGISRKEA 820

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           +DYI+ YF RFPGI +Y+E+TK F R +GYVETIFGRRIHY EI + KS IR  NERAAI
Sbjct: 821 SDYIQLYFERFPGIEDYMERTKIFARHHGYVETIFGRRIHYPEIKTAKSQIRAFNERAAI 880

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI RRAMI +  +LE  +L+ KMLLQ+HDEL+FEVP+ E T  + +I   M
Sbjct: 881 NAPIQGSAADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESTKTAILIKKVM 940

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A +P ++L VPL+V +  + NW E +
Sbjct: 941 ENATMPALSLSVPLEVKVIAAQNWDEAH 968


>gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255]
 gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255]
          Length = 1010

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/990 (45%), Positives = 655/990 (66%), Gaps = 24/990 (2%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++  K    +H A
Sbjct: 29   QGKHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPKNDRPTHLA 88

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD   VTFRN++YP YKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 89   IIFDKSEVTFRNKLYPAYKAHRPPAPDDLIPQFALIREAVKAFDLPCLEQIGFEADDLIA 148

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ ++ I  VI+K+G+PPEK+V +
Sbjct: 149  TYVRQACERGATATIVSSDKDLMQLVNGCVTMYDTMKDRRLGIAEVIEKFGVPPEKVVEV 208

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A+ IKQ KRRE ++E AE AR+
Sbjct: 209  QALAGDSVDNVPGVPGIGVKTAAQLITEYGDLDTLLARATEIKQPKRREALIENAEKARI 268

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
            SR+LV+L   V + +PL+ L +++ +  +LI+FLKA+EFT L  RVA   + +AA IEP 
Sbjct: 269  SRQLVLLDDHVALDVPLDDLAVQEPDARKLIAFLKAMEFTTLTKRVADYSEVNAAEIEPD 328

Query: 303  VLDIN-----TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                +       +    A+  ++   +        + + + +     +TP  L   RL+ 
Sbjct: 329  AKHTSGRSAMVAKASATALTGDLFGSSDSVAKGTPAGTAKATGDTKMKTPAALAAARLET 388

Query: 358  LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   P+  D+Y  I     ++ W+ +++  GS +F+ +  T+D   ++   IA++     
Sbjct: 389  VRALPVRPDAYETIRTLDRLRDWIARIDDNGSFAFEALAPTIDPMQTELSGIALALAPN- 447

Query: 418  DDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIGHNI 469
                      +I LS   S DS G             ++ L  LK   E+   LKIG N+
Sbjct: 448  -------HACYIPLSHKQSGDSAGLFAAGLAPDQIAIRDALELLKPILESRGHLKIGLNV 500

Query: 470  KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526
            K+  ++L ++GI M+  +DI L+SY LD+GR SHD+AS+A++WL +      E+  S ++
Sbjct: 501  KFSAVLLAQHGIVMQNHDDIELISYALDAGRGSHDLASLAKRWLGHATVSHGELTGSGRN 560

Query: 527  SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
             +  D+++  +   +A E +++ L+LW +L+P+L+ E++  VYE L++PMI  ++QME  
Sbjct: 561  RLAFDQVAIDRATAYAAEYADMTLRLWQVLKPRLVAERMNTVYETLERPMIATLAQMERR 620

Query: 587  GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
            GI ID+ +L ++S E +++   LE  I  L+GE  N+ SPKQ+G+I+F K+  P G+KTK
Sbjct: 621  GITIDRQVLSRLSGEFAQSAARLEAEIQQLAGEPINVGSPKQIGEIMFGKMGLPGGSKTK 680

Query: 647  TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            TG W T+AQ L+++    +   + IL+WRQ+SK+KSTY D+LP +++ +T+RVHT Y+LA
Sbjct: 681  TGAWSTSAQILDELAEQGHDFPRKILDWRQVSKLKSTYTDALPEYVHPQTRRVHTTYALA 740

Query: 707  STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            +T TGRL+S EPNLQNIP++ + G+KIRRAFI+ P  KL+SADYSQIELR+LA IA I  
Sbjct: 741  ATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADIPV 800

Query: 767  LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            L Q F + LDIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F LA QL IPR 
Sbjct: 801  LKQAFRDGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAFGLANQLGIPRE 860

Query: 827  EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            EAA YIK+YF RFPGI  Y++ T+ F R++GYV T+FGR+ HY +I SP  S R  NERA
Sbjct: 861  EAAAYIKKYFERFPGIRAYMDATREFCREHGYVTTLFGRKCHYPDIKSPNPSHRAFNERA 920

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            AINA +QGSAADI RRAM  +  +L    L+ +MLLQ+HDEL+FEVP++E+     ++ H
Sbjct: 921  AINARLQGSAADIIRRAMARMDDALAARNLSARMLLQVHDELIFEVPDDEVAATLPVVQH 980

Query: 947  SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 981  VMQDAPFPAVLLSVPLQVDARAADNWDEAH 1010


>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 929

 Score = 1014 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/986 (36%), Positives = 564/986 (57%), Gaps = 75/986 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRTQIEPLHQMVEAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEKEG AV I + DKD+ QLV+P   L +T+    +  E V++K+G+PPE ++   
Sbjct: 121 LALQAEKEGRAVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVVEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G +++I  N  +I        K   + ++++ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGGMDDIFANLDKIAGLSFRGAKTLADKMVQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV +      L +++ +  +L       EF + ++ VA        
Sbjct: 241 DVAYLSYQLATIKTDVELDKTCVALSVKEPDTEKLHQLFSRYEFKRWLSDVANGDWLAEK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +PV                                    S  N E +P +       K
Sbjct: 301 GKKPV------------------------------------STGNDESSPTE------DK 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   +++D+Y  I++ +   +W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 319 SAAATLSSDNYQTILDQQSFDEWIEKLKKASVFAFDTETDSLDTLTANLVGVSFAISAG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +  ++ L          +    + +L+ LK   E+ + LKIG NIK+D+ VL 
Sbjct: 378 -------DAAYLPLGHDYL--GAPEQLDREVVLAALKPLLEDSNLLKIGQNIKFDRGVLA 428

Query: 478 RYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
           RYGI ++G   D ML SYVL+S  G   HD+ S+A++ L++     +EI    K+ +  +
Sbjct: 429 RYGIELQGIAYDTMLESYVLNSVAGMGRHDMDSLAERHLNHKTTTFEEIAGKGKNQLTFN 488

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +++  Q   +A E+++V L L   + P+L     L  V+   + P++ V+S+ME TG+ I
Sbjct: 489 QVAVEQAAMYAAEDADVTLLLHQAMWPQLEKAPTLEKVFLNTEMPLVMVLSRMERTGVLI 548

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D ++L + S EI+  L  LE+  ++L+GE FNL+SPKQL  ILF KL+ P   KT  G  
Sbjct: 549 DANILAEHSKEITARLDELEKEAHELAGEVFNLASPKQLQTILFEKLQLPVVKKTPNGAP 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    + + K ILE R L+K+KSTY D LP  ++  T+RVHT Y  A T T
Sbjct: 609 STNEEVLEEL-ADTHALPKVILEHRGLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAVTAT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++   G++IR+AF++P   ++++ADYSQIELRI+AH+++   L + 
Sbjct: 668 GRLSSRDPNLQNIPVRNKEGRRIRQAFVAPEGYRIMAADYSQIELRIMAHLSQDQGLLKA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+FG+ +E+V+ + RR AK INF +IYG+S F L+ QL IPR EA  
Sbjct: 728 FAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQR 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+  Y+E+T+    + GYVET+ GRR++  +I S  +  R   ER AINA
Sbjct: 788 YMDLYFERYPGVLAYMERTRKQAEEQGYVETLDGRRLYLSDIKSRNAMRRKAAEREAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI ++AMI+V   +   +   +M++Q+HDELVFEV E E+  A Q I   MEK
Sbjct: 848 PMQGTAADIIKKAMIAVDDWIVSEEPKVRMIMQVHDELVFEVHESELEYAEQKIRELMEK 907

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           + +    L VPLKV++ + +NW + +
Sbjct: 908 SMV----LDVPLKVDVGIGDNWDQAH 929


>gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
 gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
          Length = 1020

 Score = 1014 bits (2623), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/1002 (44%), Positives = 667/1002 (66%), Gaps = 35/1002 (3%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            MQ   H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++  K+   +H
Sbjct: 28   MQ-GKHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPKDDRPTH 86

Query: 61   FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             A++FD   VTFRN++YP YKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+
Sbjct: 87   LAIVFDKSEVTFRNKLYPAYKAHRPPAPDDLIPQFALIREAVKAFDLPCLEQAGFEADDL 146

Query: 121  IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
            IATY   A + G   TI+S+DKDLMQLV+    +YDT+K+ ++ I  VI+K+G+PP+K++
Sbjct: 147  IATYVRQACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRLGIPEVIEKFGVPPDKVI 206

Query: 181  CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +QAL GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A+ IKQ KRRE ++E AE A
Sbjct: 207  EVQALAGDSVDNVPGVPGIGVKTAAQLITEYGDLDTLLARAAEIKQPKRREALIENAEKA 266

Query: 241  RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            R+SR+LV+L   V + +PL+ L +++ +  +LI+FLKA+EFT L  RVA   + +AA IE
Sbjct: 267  RISRQLVLLDDHVALDVPLDDLAVQEPDARKLIAFLKAMEFTTLTKRVADYSEINAAEIE 326

Query: 301  PVVLDINTT--------------ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE-Q 345
            P   + +                E +G    +     ++   ++ + +S   +  ++E +
Sbjct: 327  PDAKNASNMIDAKALSAPSPLAGEGRGGGAISGDLFGSSDNVAKKAPVSGAKATSHTEIK 386

Query: 346  TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            TP  L   RL+ +   P+  DSY  I     ++ W+ +++  GS +F+ +  T+D   ++
Sbjct: 387  TPAALAAARLEAVRALPVRPDSYETIRTLDRLRDWIARIDDNGSFAFEALAPTIDPMQAE 446

Query: 406  PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFF 457
               ++++            +  +I L    + DS G             ++ L  LK   
Sbjct: 447  LAGLSLALAPN--------DACYIPLGHKQAGDSAGLFAAGLAPDQIAIRDALELLKPIL 498

Query: 458  ENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
            E+   LKIG NIK+  ++L ++GI M+  +D+ L+SY LD+GR SHD+AS+A++WL +T 
Sbjct: 499  ESGGHLKIGLNIKFSAVLLAQHGIVMQNHDDVELISYTLDAGRGSHDLASLAKRWLGHTT 558

Query: 518  ---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
                E+  S ++ + +D+++  +   +A E +++ L+LW +L+P+L+ E++  VYE L++
Sbjct: 559  LSHGELTGSGRNRLAVDQVAIDRATAYAAEYADMTLRLWQVLKPRLVAERMNAVYETLER 618

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            PM   +++ME  GI ID+ +L ++S E+++    LE  I  L+GE  N+ SPKQ+GDI+F
Sbjct: 619  PMTATLARMERRGITIDRQVLSRLSGELAQTAARLEAEIQQLAGEPINVGSPKQIGDIMF 678

Query: 635  TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
             K+  P G+KTKTG W T+AQ L+++    +   + IL+WRQ+SK+KSTY D+LP ++N 
Sbjct: 679  GKMGLPGGSKTKTGAWSTSAQVLDELAEQGHDFPRKILDWRQVSKLKSTYTDALPEYVNP 738

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            +T+RVHT Y+LA+T TGRL+S EPNLQNIP++ + G+KIRRAFI+ P  +L+SADYSQIE
Sbjct: 739  QTRRVHTTYALAATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIAAPGHRLVSADYSQIE 798

Query: 755  LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            LR+LA IA I  L Q F + LDIH M A+E+FGV ++ +  ++RR AK INF IIYGIS 
Sbjct: 799  LRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISA 858

Query: 815  FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            F LA QL IPR EAA YIK+YF RFPGI  Y++ T++F R++GYV T+FGR+ HY +I +
Sbjct: 859  FGLANQLGIPREEAAAYIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHYPDIKA 918

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
            P  S R  NERAAINA +QGSAADI RRAM+ +  +L   KL+ +MLLQ+HDEL+FEVP+
Sbjct: 919  PNPSHRAFNERAAINARLQGSAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPD 978

Query: 935  EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            EE+     ++ H M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 979  EEVAATLPVVQHVMQDAPFPAVLLSVPLQVDARAADNWDEAH 1020


>gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586]
 gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586]
          Length = 929

 Score = 1014 bits (2621), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/984 (36%), Positives = 550/984 (55%), Gaps = 71/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LLQ        SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGA-GEPTGAMYGVLNMLRSLLQQYH----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLSVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V  K+GIPP  ++   
Sbjct: 121 LAQQAERAGKPVLISTGDKDMAQLVTPQITLINTMNNTILGPDEVCAKYGIPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + ++ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGVGGLDALYDNLDKIATLTFRGAKTMAAKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L + + +   L       EF + +  V         
Sbjct: 241 DVAYLSYQLATIKTDVELELGCEQLTVNELDVTELRELFARYEFKRWLADVEDGKWLQGG 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P  +     E++                                        E   K
Sbjct: 301 KKGPAAVPFVKPESE----------------------------------------EDAPK 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ D Y  I++   +Q W+ ++   G  SF   TD +D   +  + I+++     
Sbjct: 321 EASSVLSQDGYVTILDESSLQDWIARINAAGLFSFDTETDGLDTLTANLVGISLAIKPG- 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D+         +L+ LK   ENE   KIG N+K+DK V+ 
Sbjct: 380 EAAYLPLGHDYLDAPTQLDRDT---------VLAQLKPLLENEAIGKIGQNLKFDKGVMA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVLDS    HD+ S+++++L +     +EI    K+ +  ++I
Sbjct: 431 RYGIDLRGIVFDTMLESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L  KL   ++L  V++ +D P++ V+S+ME TG+ ID 
Sbjct: 491 PLEQAAVYAAEDADVTLRLHETLWAKLEPQQELCQVFKNIDMPLVPVLSRMERTGVLIDT 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E+++ L  LE   ++L+GE FNL+SPKQLG IL+ KL+ P   KT  G   T
Sbjct: 551 TILAEHSQELTQRLAELEVRAHELAGEAFNLASPKQLGAILYEKLQLPVIKKTPKGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D+P+ K ILE R+L+K+KSTY D LP  IN  T+RVHT Y  A T TGR
Sbjct: 611 NEEVLAELAL-DHPLPKLILEHRELAKLKSTYTDKLPQMINPLTKRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L + F 
Sbjct: 670 LSSSDPNLQNIPVRNEEGRRIRQAFIAPQGYQILAADYSQIELRIMAHLSRDAGLLKAFS 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIHR  AAE+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL I R+EA  Y+
Sbjct: 730 DGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINFGLIYGMSAFGLSRQLGIARNEAQKYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  +  R   ERAAINAP+
Sbjct: 790 NLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPDIHSRNAMSRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AMI++   L+  K    ML+Q+HDELVFEV    +   S  I + ME   
Sbjct: 850 QGTAADIIKKAMIAIDDWLQQEKPLATMLMQVHDELVFEVHHSVLDEVSAKIRNLMEGCM 909

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL+V+I   +NW + +
Sbjct: 910 ----QLDVPLQVDIGTGSNWDQAH 929


>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
 gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI39]
          Length = 928

 Score = 1013 bits (2618), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 550/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            ++P                            Q +S++D+  ++ +              
Sbjct: 301 GVKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
          Length = 928

 Score = 1012 bits (2617), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
 gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
          Length = 928

 Score = 1012 bits (2617), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKTWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   ENE  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLENEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
          Length = 928

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGCPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        KK    + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKKMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
 gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
 gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
 gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
          Length = 928

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
 gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
          Length = 928

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
 gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
          Length = 928

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLELFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
 gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
 gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
 gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
 gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
 gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
          Length = 928

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
 gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
          Length = 928

 Score = 1011 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 550/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL +ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQNILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score = 1011 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/983 (48%), Positives = 657/983 (66%), Gaps = 22/983 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+ ++HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL ++R  ++   
Sbjct: 1   METKDHLFLVDGSGYIFRAYHALPPLKRKRDGLPVGAVAGFCNMLWKLLCDARNTAVGIV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR +IYP YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSDTFRKKIYPQYKANRAAPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +A + G   TIIS+DKDLMQLV+    LYD +K++ I +  VI+KWG+ PE
Sbjct: 121 DDLIATYAQLATQAGAKTTIISSDKDLMQLVNTRVSLYDGMKDKHIGVSEVIEKWGVAPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQAL GD+ DNIPG+PGIG K AA LL ++G L+ +L +A  IKQ KRRENI  Y 
Sbjct: 181 KMIDLQALVGDTTDNIPGVPGIGPKIAAQLLNQFGTLDLLLQHAEEIKQVKRRENIQAYK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  ++SR+LV L+TDVPI   L++ ILE  +GPRLI+FLKA+EFT L  RVA    CDA 
Sbjct: 241 EQTKISRELVKLKTDVPIDNNLDNFILEPQDGPRLIAFLKAMEFTTLTRRVAEATACDAE 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+ + +D            T+      + + +  SL    +    + +PQ L  +R  +
Sbjct: 301 VIDALDIDTEW---------TQTIHGPDLDSEKVGSL---LTHDFCKDSPQTLAQKRKDQ 348

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                   DSY  I++ K +++W+ + +  G  +F I T +++   +K I  +++   +K
Sbjct: 349 ALVQKNIGDSYETILDEKILREWLLEAQEQGYFAFNIETTSLNPIQAKIIGFSLALQPEK 408

Query: 418 DDT-SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 +      DL              T+++L+ LK   E++  LKIG+N+KY+ L++
Sbjct: 409 AAYIPLEHTEEGCDL---LGGGCVVTQIETQKVLALLKPILEDQAVLKIGYNMKYNWLIM 465

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            +Y I  + F+DIML+SY LD+G S+H+   ++++WL +     K++  + K      ++
Sbjct: 466 KQYAIVTQPFDDIMLISYALDAGTSTHNRDILSERWLKHKPIAYKDLTHNGKKITSFAQV 525

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              Q   +A E +++ L+LW +L+P+L+ + +  +YERLD+P+I+V+++ME  GI +D+ 
Sbjct: 526 DLKQATFYAAEGADITLRLWQVLKPQLVAQGVTKIYERLDRPLIEVLAKMEERGILVDRQ 585

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L ++S E+++  LSLEE IY L GE+FN++SPKQL DILF K+  P G KTK GQW T+
Sbjct: 586 ILSRLSCELAQAALSLEEEIYQLVGERFNIASPKQLSDILFGKMGLPGGVKTKNGQWSTS 645

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           AQ LE++    + + + I++WRQL+K+KSTY D+LP +I   T RVHT YSLA+T TGRL
Sbjct: 646 AQILEELAAEGHTLPRKIVDWRQLTKLKSTYTDALPYYILPETGRVHTNYSLATTSTGRL 705

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIPI+T  G+KIR AFI+P    L+SADYSQIELRILAHIA IT L + F  
Sbjct: 706 SSSEPNLQNIPIRTPEGRKIRTAFIAPKGCVLLSADYSQIELRILAHIANITALKEAFAQ 765

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH + A++IFGV +E +   +RR AK INF IIYGIS F LA QL I R+EA+ YI 
Sbjct: 766 DQDIHAITASQIFGVAVEGMPSDIRRRAKAINFGIIYGISAFGLANQLSISRNEASRYID 825

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RFPGI +Y+E TK+F RQ+GYVETIFGRRIHY EI +  S IR  NERAAINAPIQ
Sbjct: 826 IYFERFPGIKDYMETTKSFARQHGYVETIFGRRIHYPEIKATNSQIRTFNERAAINAPIQ 885

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI RRAMI +  +L+  KL+ KMLLQ+HDEL+FEVPE E      ++   ME A +
Sbjct: 886 GSAADIIRRAMIQMEGALKKEKLSAKMLLQVHDELIFEVPETESEKTKVLVTKVMENAAM 945

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
           P ++L VPLKV +  + NW E +
Sbjct: 946 PALSLSVPLKVKVAAAQNWNEAH 968


>gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
          Length = 928

 Score = 1011 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEEILKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
 gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
          Length = 938

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/978 (40%), Positives = 588/978 (60%), Gaps = 50/978 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQ-NSRKESIASHF 61
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + +  NS      +H 
Sbjct: 7   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYIDGNSASSDAPTHI 66

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI+G+EADDII
Sbjct: 67  AVIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRRATEAFNIACKEIEGYEADDII 126

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    A   G  VTIIS+DKDLMQLV     ++D +K  +ID+E V +K+G+ P+++V 
Sbjct: 127 ATLACQARDLGGRVTIISSDKDLMQLVGDGVEMFDAMKNRRIDVEGVEEKFGVGPDRVVD 186

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  I Q KRR+ ++E+     
Sbjct: 187 VQALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAEDIPQPKRRQTLIEHRAQIE 246

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+KLV L  + P+   L+ L L D +   L++FL  +EF  L  R+A +   +     P
Sbjct: 247 LSKKLVQLDCETPLDFTLDDLELRDPDPDTLLAFLAEMEFRTLSKRIADSLGAEP----P 302

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V+ D N         +   D                                        
Sbjct: 303 VIPDTNPAGANPTEGDAAPDWPA------------------------------------- 325

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+ DSY  + + + ++ W+  ++  G  +    T +++   +  + I+++    +    
Sbjct: 326 -IDPDSYEHVRDMEALEAWIAHIQARGLVAVDTETTSLNEMQAALVGISLAVEPGRACYI 384

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
               T      + +S            +L  LK   E++  LKIG N+KYD  +  R+GI
Sbjct: 385 PLRHTEGASGDLFSSDALAEGQLDLDAVLGALKPMLEDDAILKIGQNMKYDAKIFARHGI 444

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
            +  F+D MLMSY L++G   H + ++++++LS+     KE+L + KS++  D++  +  
Sbjct: 445 RVAPFDDTMLMSYALNAGIHGHGMDTLSERYLSHQPIPIKELLGTGKSAVTFDRVPVADA 504

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            ++A E++++ L+LW + +P+L  EK+  VYE L++P+  V++QME  GI++D++ L ++
Sbjct: 505 VKYAAEDADITLRLWHVFKPQLHREKVTTVYETLERPLSPVLAQMERNGIKVDRETLSRM 564

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S + ++ +  LEE I++L+G KFN+ SPKQLG+ILF ++    G + KTG + T A  LE
Sbjct: 565 SGKFAQKMAQLEEEIHELAGRKFNVGSPKQLGEILFDEMGLDGGKRGKTGAYATGADVLE 624

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +   ++ +   +L+WR LSK+KSTY D+L +HI+  T RVHT Y      TGRLAS +P
Sbjct: 625 DL-ATEHDLPARVLDWRALSKLKSTYTDALQDHIDPDTGRVHTSYVQTGATTGRLASTDP 683

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++++ G++IR AF++ P   L+S DYSQIELRILAHIA I  L Q F +  DIH
Sbjct: 684 NLQNIPVRSEEGRRIREAFVAEPGNVLVSLDYSQIELRILAHIADIDALRQAFRDGQDIH 743

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR EA  +I RYF R
Sbjct: 744 AMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDRYFER 803

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPGI  Y++KT +F +++G+V+T+F R+IH  EI S K        RAAINAPIQG+AAD
Sbjct: 804 FPGIKTYMDKTVDFAKEHGFVQTLFNRKIHTPEI-SAKGPRAGFARRAAINAPIQGTAAD 862

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I RRAMI +  ++    +  KMLLQ+HDEL+FEV               ME A  P + +
Sbjct: 863 IIRRAMIRMPAAI--EGMPAKMLLQVHDELIFEVEAGAADALIATARDVMEAAADPAVKI 920

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V+     NW E +
Sbjct: 921 DVPLVVDAGQGANWAEAH 938


>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
 gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
          Length = 928

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVTDEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
 gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
 gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
           exonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
          Length = 928

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLGYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
          Length = 928

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
 gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
          Length = 937

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/977 (42%), Positives = 583/977 (59%), Gaps = 47/977 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++     +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 65  VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNISCIETEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
                A + G   TI+S+DKDLMQLV     + D +K ++I  + VI+K+G+PPE++V +
Sbjct: 125 ALACRAREAGGTCTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVIEKFGVPPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+QEYG+LE +L  A  IKQ KRR  I + AE  R+
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLIQEYGDLEGLLARAGEIKQPKRRAAIEDNAEQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   LE L +       L+ FL  +EF  L  RVA +   +       
Sbjct: 245 SKRLVELDCNTPLDFALEDLEVRLPVADELLGFLNRMEFRTLTTRVAASLKVE------- 297

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +     + +E  P+ +     Q  +  P
Sbjct: 298 -----------------------------PPPAPTAFVVQNESVPEIVE----QVEAALP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++ SY  + + + +  W+ ++   G  +    T ++D   ++ + I++           
Sbjct: 325 FDSASYACVRDAEALAAWIARIRERGHVAIDTETTSLDEMRAELVGISLCVEAGS-ACYI 383

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +  S D           LS LK   E++  LKIG N+KYD  +  R+GI 
Sbjct: 384 PLGHRAGGGDLFGSLDLVADQIPLDLALSMLKPVLEDDAILKIGQNMKYDAKIFARHGIR 443

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY + +GR  H +  +   +L +     K +L S KS I  D++   Q  
Sbjct: 444 VAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVDQAV 503

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++V L+LW L +P+L   ++  VYE L++P++ V+++ME+ G+Q+D+D L ++S
Sbjct: 504 CYAAEDADVTLRLWRLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMS 563

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ + +LE  I+ L+G  FN+ SPKQLG+ILF ++    G K K G W T A  LE 
Sbjct: 564 NAFAQKMAALEAEIHGLAGGPFNVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLED 623

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT YS+A   TGRLAS +PN
Sbjct: 624 LAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGRLASTDPN 683

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T+ G++IR AF++P  K L+S DYSQIELRILAHIA I  L Q F    DIH 
Sbjct: 684 LQNIPVRTEEGRRIREAFVAPKGKLLVSVDYSQIELRILAHIADIPALKQAFREGHDIHA 743

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M AAE+F V +E + P +RR AK INF +IYGIS F LA  LRIPR++A  +I RYF RF
Sbjct: 744 MTAAEMFNVPLEGMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFIDRYFERF 803

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++T  F + +G+V+T+FGRRI+  EIN+ K        RAAINAPIQG+AAD+
Sbjct: 804 PGIRAYMDETVAFAKAHGFVQTLFGRRINTPEINA-KGPGAGFARRAAINAPIQGTAADV 862

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI + K+L+   L  KMLLQ+HDEL+FEV E         +   ME A  P + L 
Sbjct: 863 IRRAMIRMPKALD--GLPAKMLLQVHDELLFEVDEAAADPVIARVREVMESASEPAVKLS 920

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+     NW E +
Sbjct: 921 VPLTVDAGRGANWAEAH 937


>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
 gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
 gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
 gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11]
          Length = 928

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 TLEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
 gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
 gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
          Length = 928

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
 gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
          Length = 928

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T+RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
 gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
 gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
 gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
 gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
 gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
 gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
 gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
 gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
 gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
 gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9]
 gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B]
 gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
 gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736]
 gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
 gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
 gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
 gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
 gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
 gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K12 substr.
           W3110]
 gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
 gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
 gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
 gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
 gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
 gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
 gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
 gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli 55989]
 gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI1]
 gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
 gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Escherichia coli BL21(DE3)]
 gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
 gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
 gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
 gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
 gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
 gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
 gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
 gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
 gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
 gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
 gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
 gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
 gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
          Length = 928

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
 gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
          Length = 928

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLQYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933]
 gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
 gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
 gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
 gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
 gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
 gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
 gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
 gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
 gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88]
          Length = 928

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 547/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV  +++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
 gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli ED1a]
          Length = 928

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGRGENWDQAH 928


>gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
 gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
          Length = 1012

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1001 (42%), Positives = 642/1001 (64%), Gaps = 35/1001 (3%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL+    ++  +H A
Sbjct: 20   KGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLREMPPDNRPTHLA 79

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD    TFRNE+YP YKA RP  PE L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 80   IIFDKSEKTFRNEMYPAYKAQRPPAPEDLIPQFALIREAVRAFDLPCLEQIGFEADDLIA 139

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ +I I  VI+K+G+PP K+V +
Sbjct: 140  TYVREACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGIAEVIEKFGVPPNKVVEV 199

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A+ IKQ KRRE ++E A+ AR+
Sbjct: 200  QALAGDSVDNVPGVPGIGVKTAAQLINEYGDLDTLLSRAAEIKQPKRREALIENADKARI 259

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT------------ 290
            SR+LV+L   V + +PL+ L + + +  +LI+FLKA+EF+ L  RVA             
Sbjct: 260  SRRLVLLDDHVKLDVPLDELAVHEPDARKLIAFLKAMEFSTLTRRVAEYSQIDPADVAAD 319

Query: 291  --TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ--T 346
              T    A    P                   D  +     +     D   +  +    T
Sbjct: 320  AATKSAAAIAPAPTGDQFVMAGLDPAIHPASQDASSKATNPRVKPAGDGGKRGEAANDFT 379

Query: 347  PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
            P  L   R ++     ++ D Y  + +  ++ +W+ ++   G  +F+    ++D   ++ 
Sbjct: 380  PISLAAARAEQARNTKVDRDGYQTVRSLDELNRWIARIHDAGQVAFEAKATSIDPMQAEL 439

Query: 407  IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFE 458
              +A++    +          +I L    S D  G            T++ L  L+   E
Sbjct: 440  CGLALALTPNE--------ACYIPLGHKQSGDGDGLFAAGLAPDQIGTRDALEALRPLLE 491

Query: 459  NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-- 516
            +   LKIG NIK+  ++L ++G++++  +D+ LMSY LD+GR +H + ++A+ WL +   
Sbjct: 492  SPGVLKIGFNIKFTAVLLAQHGLTLQNHDDVQLMSYALDAGRHAHGLDALAENWLGHKAL 551

Query: 517  -RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
               E++ S K+ +  D+++  +   +A E+++V L+LW +L+P+L  E+++ VYE L++P
Sbjct: 552  SYGEVIGSGKAKLGFDQVAIDRATCYAAEDADVALRLWRILKPRLTAERMMTVYETLERP 611

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
            +I V+++ME  GI ID+ +L ++S++ ++    +E  I +++GE+ N+ SPKQLGD+LF 
Sbjct: 612  LIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIREIAGEELNIGSPKQLGDVLFG 671

Query: 636  KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
            K+  P G KTKTG W T+A  L+++    +   + IL+WRQ+SK++STY D+LP +++ +
Sbjct: 672  KMGLPGGKKTKTGAWSTSASILDELAEEGHQFPRKILDWRQVSKLRSTYTDALPTYVHPQ 731

Query: 696  TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
            T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P  KL+SADYSQIEL
Sbjct: 732  THRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAPGHKLVSADYSQIEL 791

Query: 756  RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
            R+L+ +A++  L   F++ +DIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F
Sbjct: 792  RLLSEVAEVPALRTAFQDGIDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIYGISAF 851

Query: 816  RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
             LA QL IPR EA  YIK+YF RFPGI +Y++ TK F R +GYVET+FGR+ HY +I + 
Sbjct: 852  GLANQLGIPREEAGAYIKKYFERFPGIRDYMDATKEFCRAHGYVETLFGRKCHYPDIKAS 911

Query: 876  KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
              SIR  NERAAINA +QG+AADI RRAM+ +  +L   +L+ +MLLQ+HDEL+FEVP++
Sbjct: 912  NPSIRAFNERAAINARLQGTAADIIRRAMVRMEDALAAKQLSAQMLLQVHDELIFEVPDD 971

Query: 936  EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            E+     ++   M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 972  EVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAADNWDEAH 1012


>gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272]
          Length = 928

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S          +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAPDQISH---------ERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ER AINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERTAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
 gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
          Length = 928

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
          Length = 928

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 547/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D   ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADDAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
 gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
          Length = 928

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAKLEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
 gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
 gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli UMN026]
 gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
          Length = 928

 Score = 1010 bits (2611), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/984 (36%), Positives = 547/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   ENE  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLENEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
          Length = 928

 Score = 1010 bits (2611), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S+ D+  ++ +              
Sbjct: 301 GEKPAAK------------------------PQQTSVVDEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
 gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
          Length = 928

 Score = 1010 bits (2611), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGRGENWDQAH 928


>gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
 gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
          Length = 1021

 Score = 1010 bits (2611), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1004 (43%), Positives = 648/1004 (64%), Gaps = 29/1004 (2%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL+    +   +H 
Sbjct: 18   SKGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLREMPNDERPTHL 77

Query: 62   AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            A+IFD    TFRNE+YP YKA RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+I
Sbjct: 78   AIIFDKAEKTFRNELYPLYKAQRPPAPDDLIPQFALIREAVRAFDLPCLEQIGFEADDLI 137

Query: 122  ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            ATY   A + G   TI+S+DKDLMQLV+    ++DT+K+ +I I  VI+K+G+PP+K+V 
Sbjct: 138  ATYVRQACERGATATIVSSDKDLMQLVTDCVTMFDTMKDRRIGIPQVIEKFGVPPDKVVE 197

Query: 182  LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +QAL GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A+ IKQ KRRE ++  AE AR
Sbjct: 198  VQALAGDSVDNVPGVPGIGVKTAAQLINEYGDLDTLLARAAEIKQPKRREALIANAEKAR 257

Query: 242  LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +SR+LV+L   V + +PL+ L + + +  +LI+FLKA+EF+ L  RVA     D A++E 
Sbjct: 258  ISRQLVLLDDKVALDVPLDELAVHEPDARKLIAFLKAMEFSTLTRRVAEYSQIDPADVEA 317

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSS--------------------LSDQTSKI 341
                 + T +             T     F +                    L+    + 
Sbjct: 318  DAAVKSGTSSPSPLAGEGRGGGATDAGDLFGAPPSPTLPRKGGGSAPQTGQGLASSAPQS 377

Query: 342  NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS------FKII 395
            +   TPQ L   R ++  + P+N D Y  +    ++  W+ K+  +G  +      F I 
Sbjct: 378  SDALTPQLLAAARAEEARKIPVNRDGYATLRTRDELHGWIAKIHDLGHVALEAKATFDIK 437

Query: 396  TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
            +  +D   ++   +A++    +            D +   +          ++ L  L+ 
Sbjct: 438  SAVVDPMQAELTGLALALGPNEACYVPLGHRQSGDAAGLFASGLEPDQIAARDALEALRP 497

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+   LKIG NIK+  ++L ++GI+++  +D+ LMSY LD+GR +H + ++A+ WL +
Sbjct: 498  ILESPGVLKIGFNIKFTAVLLAQHGITLQNADDVQLMSYALDAGRHAHGLDALAETWLGH 557

Query: 516  T---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
                  E++ S K+ +  D+++  +   +A E+++V L+LW +L+P+L+ E++  VYE L
Sbjct: 558  KTLSYGEVIGSGKAKLSFDQVAIDRATCYAAEDADVALRLWRVLKPRLVAERMTTVYETL 617

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P+I V+++ME  GI ID+ +L ++S + ++    +E  I +++GE+ N+ SPKQLGDI
Sbjct: 618  ERPLIGVLARMERRGISIDRAVLARLSGDFAQTAARIEAEIREIAGEEINIGSPKQLGDI 677

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF K++ P G+KTKTG W T+AQ LE++    +   + IL+WRQ+SK++STY D+LP ++
Sbjct: 678  LFGKMQLPGGSKTKTGAWSTSAQVLEELAEQGHEFPRKILDWRQVSKLRSTYTDALPTYV 737

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            + +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P  KL+SADYSQ
Sbjct: 738  HPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAPGHKLVSADYSQ 797

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+LA IA I  L Q F++ LDIH M A+E+FGV I+ +  ++RR AK INF IIYGI
Sbjct: 798  IELRLLAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGI 857

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL IPR EA  YIK+YF RFPGI  Y++ T++F R +G+VET+FGR+ HY +I
Sbjct: 858  SAFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCRAHGFVETLFGRKCHYPDI 917

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             +  +S+R  NERAAINA +QG+AADI RRAM+ +  +L + KL+ +MLLQ+HDEL+FEV
Sbjct: 918  KASNASVRAFNERAAINARLQGTAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEV 977

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             ++E+     ++   M+ A  P + L VPL+V+ + +NNW E +
Sbjct: 978  ADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAANNWDEAH 1021


>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
 gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
 gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
 gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli S88]
 gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
 gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
 gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
 gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
          Length = 928

 Score = 1010 bits (2611), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGRGENWDQAH 928


>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
 gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
          Length = 934

 Score = 1009 bits (2610), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/977 (39%), Positives = 588/977 (60%), Gaps = 50/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGSSFI+RA++A P L+RK DGLP+ A++GFCNML + ++ +      +H A
Sbjct: 5   KGCHLHLIDGSSFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEGNNGHDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++YP+YKANR  +PE L PQ+PL R AT+AF I   E +G+EADDIIA
Sbjct: 65  VIFDKGSHTFRNDLYPEYKANREAMPEDLRPQIPLTREATRAFNIACEEKEGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  VTIIS+DKDLMQLV     + D +K   ID+E V +K+G+ P+++V +
Sbjct: 125 TLACQARDLGGRVTIISSDKDLMQLVGDGVEMLDAMKNRLIDVEGVREKFGVSPDRVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRR+ ++E      +
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEALLDRAEEIKQPKRRDTLIEKRAQIEM 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L + D +   L+ FL  +EF  L  R+A      A  I   
Sbjct: 245 SKRLVQLDCNTPLDFTLDDLEVRDPDPEMLLGFLAQMEFRTLSKRIAEALGAVAPTI--- 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           + Q++    +Q+P    +E         
Sbjct: 302 -----------------------------PEPAAQSAATAPDQSPDWPAIE--------- 323

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
              ++Y  + +   +  W+  +   G  +F   T +++   +  + I+++T   +     
Sbjct: 324 --PETYVHVSDRATLDAWIATIRAQGYVAFDTETTSLNEMQADLVGISLATAPGRACYIP 381

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     +  S           E+L+ LK   E++  LKIG N+KYD  +L  +GI+
Sbjct: 382 VAHKDGAADDLFGSDARAEGQLPLDEVLNALKPVLEDDAILKIGQNMKYDAKILAAHGIT 441

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY L +G   H + ++++++L+++    + +L S K+++  D++  ++  
Sbjct: 442 VAPIDDTMLMSYALHAGLHGHGMDTLSERYLNHSPIPIRSLLGSGKAAVTFDRVPVAEAV 501

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A E++++ L+LWL L+P+L   ++  VYE L++P++ V+++ME  G+ +D+D L+ +S
Sbjct: 502 KYAAEDADITLRLWLTLKPQLHRAQVTTVYETLERPLVPVLARMERDGVLVDRDTLRAMS 561

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            + ++ +  LE  I+ L+   FN+ SPKQLG+ILF ++  P G K KTG + T A  LE 
Sbjct: 562 GKFAQKMAGLESEIHALARRSFNVGSPKQLGEILFDEMGLPGGEKGKTGAYATGADVLED 621

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ +   +L+WRQLSK+KSTY D+L +HI+  T RVHT Y      TGR +S +PN
Sbjct: 622 L-ATEHDLPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYLQTGASTGRFSSSDPN 680

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++ P  +L+S DYSQIELRILAH+A I  L Q F +  DIH 
Sbjct: 681 LQNIPVRSEEGRRIREAFVAAPGNRLVSLDYSQIELRILAHVAGIETLKQAFRDGHDIHA 740

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V + +++P++RR AK INF +IYGIS F LA  LRIPR EA  +I RYF RF
Sbjct: 741 MTASEMFNVPLAEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDRYFERF 800

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI +Y++ T  F +++GYV+T+FGR+IH  EI + K        RAAINAPIQG+AADI
Sbjct: 801 PGIKDYMDATTAFAKEHGYVQTLFGRKIHTPEI-AAKGPRAGFARRAAINAPIQGTAADI 859

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI + +++    L  KMLLQ+HDEL+FEV E+ +     +    M+ A  P + L 
Sbjct: 860 IRRAMIRMPEAI--EGLPCKMLLQVHDELIFEVAEDSVDRLIDVARAVMQGAADPAVRLD 917

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+     NW E +
Sbjct: 918 VPLVVDAGQGRNWAEAH 934


>gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B]
          Length = 928

 Score = 1009 bits (2610), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/984 (36%), Positives = 547/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P  L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E++NV LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDANVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
          Length = 928

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 547/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P  L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
 gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
          Length = 1025

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/996 (42%), Positives = 643/996 (64%), Gaps = 22/996 (2%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++   E+  +H A
Sbjct: 30   KGDHIFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLA 89

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD   VTFRN +YP+YKA+RP  PE L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 90   IIFDKSEVTFRNHLYPEYKAHRPPAPEDLIPQFALIREAVRAFDLPCLEQSGFEADDLIA 149

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ +I +  VI+K+G+PP K+V +
Sbjct: 150  TYVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFGVPPNKVVEV 209

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ KRRE ++E AE AR+
Sbjct: 210  QALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKARI 269

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300
            SRKLV+L   V + +PLE L + + +  +L++FLKA+EFT L  RVA     D +++E  
Sbjct: 270  SRKLVLLDDHVQLEVPLEELAVHEPDARKLVAFLKAMEFTTLTRRVADYAQIDPSDVEAE 329

Query: 301  -------PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-------- 345
                   P +           A +    + +       +  S Q   +N+ +        
Sbjct: 330  TALKSAVPPLAKSAAASGDLFAGQEPSPQPSPASGGGSALASGQGGPLNAGRGRDGRPGV 389

Query: 346  --TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
              +P+ L   R +   + P++  +Y  + +  ++  ++ ++   G  + + +  ++D   
Sbjct: 390  VLSPEALVAARAEAARKIPVDRTAYKTLRSLDELHGFIARIHDTGIVALETVATSIDPMQ 449

Query: 404  SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
            ++ I +A++           +     D     +          ++ L  LK   E+    
Sbjct: 450  AELIGLALALGPNDACYIPLLHKQSGDGDGLFAAGLAPDQIGPRDALDALKPILESAGVA 509

Query: 464  KIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEI 520
            K+G  IK+  ++L ++G+++R  +D  LMSY LD+GR SH + ++++  L +T     E+
Sbjct: 510  KVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHALDALSESNLGHTLHTLTEL 569

Query: 521  LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
              + K+ I  D++   +   +A E ++V L+L  +L+P+L+   +  VYE L++P++ V+
Sbjct: 570  TGTGKNKIGFDQVPVDRATAYAAERADVSLRLARVLKPRLVAGSMTAVYETLERPLVGVL 629

Query: 581  SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
            ++ME  GI ID+ +L ++SA+ ++    +E  I +L+GE  N+ SPKQLGDILF K+  P
Sbjct: 630  ARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDILFGKMGLP 689

Query: 641  SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
             G+KTKTG W T+AQ L+++    +   + IL+WRQ+SK++STY D+LPN+++ +T RVH
Sbjct: 690  GGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVH 749

Query: 701  TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
            T Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P  KL+SADYSQIELR+L+ 
Sbjct: 750  TTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQIELRLLSE 809

Query: 761  IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
            +A +  L + F++ +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA Q
Sbjct: 810  VADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQ 869

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            L IPR EA  YIKRYF RFPGI  Y+++T++F R +GYV T+FGR+ HY +I +   SIR
Sbjct: 870  LSIPREEAGAYIKRYFERFPGIRAYMDETRDFCRNHGYVTTLFGRKCHYPDIKASNPSIR 929

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              NERAAINA +QGSAADI RRAM+ +  +L + KL+ +MLLQ+HDEL+FEVPE E+   
Sbjct: 930  AFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEVEAT 989

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              ++   M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 990  LPVVRAVMQDAPFPAVILNVPLQVDARAADNWDEAH 1025


>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
 gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
          Length = 928

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIESGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALDEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
 gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
          Length = 928

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYATEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
          Length = 928

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 547/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPSV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
 gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
          Length = 928

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 547/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+    L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTSNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591]
 gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591]
          Length = 928

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/984 (37%), Positives = 550/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LLQ        SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGV-GEPTGAMYGVLNMLRSLLQQYH----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLSVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V  K+GIPP  ++   
Sbjct: 121 LAQQAERVGKPVLISTGDKDMAQLVTPHITLINTMNNTILGPDEVCAKYGIPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PGIG KTA  LLQ  G L+ +  N  +I        K     + ++ 
Sbjct: 181 ALMGDSSDNIPGVPGIGEKTAQALLQGVGGLDALYGNLDKIATLTFRGAKTMAAKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV +    E L + + N   L       EF + +  +       + 
Sbjct: 241 DVAYLSYQLATIKTDVELEQGCEQLTVNEPNVAELSELFTRYEFKRWLTDLEDGKWLQSG 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P  +     E                                ++ TP+ +       
Sbjct: 301 KKGPAAVPFVKAE--------------------------------ADDTPKDVV------ 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                +  D Y  I++   +  WV ++ T G  SF   TD +D   +  + I+++     
Sbjct: 323 ---GVLPQDGYVTILDEPTLHDWVARINTAGLFSFDTETDGLDTLTANLVGISLAIKPG- 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D  +   +D         ++L+ LK   E+E   KIG N+K+DK V+ 
Sbjct: 379 EAAYLPLGHDYLDAPMQLDRD---------KVLAVLKPLLEDESVAKIGQNLKFDKGVMA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVLDS    HD+ S++ ++L +     +EI    K+ +  ++I
Sbjct: 430 RYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLSDRYLQHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L  KL    +L  V++ +D P++ V+S+ME TG+ ID 
Sbjct: 490 PLEQAAVYAAEDADVTLRLHETLWAKLEPQPELCKVFQNIDMPLVPVLSRMERTGVLIDT 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E+++ L  LE   ++L+GE FNLSSPKQLG IL+ KL+ P   KT  G   T
Sbjct: 550 TILGEHSQELTQRLAELEVQAHELAGEAFNLSSPKQLGTILYEKLQLPVIKKTPKGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D+P+ K ILE R+L+K+KSTY D LP  IN  T+RVHT Y  A T TGR
Sbjct: 610 NEEVLAELAL-DHPLPKLILEHRELAKLKSTYTDKLPQMINPLTKRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L + F 
Sbjct: 669 LSSSDPNLQNIPVRNEQGRRIRQAFIAPEGYHILAADYSQIELRIMAHLSRDAGLLRAFS 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N LDIHR  AAE+FG+ +++V+ + RR AK INF +IYG+S F L+ QL IPR+EA  Y+
Sbjct: 729 NGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAFGLSRQLAIPRNEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  +  R   ERAAINAP+
Sbjct: 789 NLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPDIHSRNAMSRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AMI++   L+  K    ML+Q+HDELVFEV    +  AS  I + ME   
Sbjct: 849 QGTAADIIKKAMIAIDGWLQQEKPLVTMLMQVHDELVFEVHHSVLDEASAKIRNLMEGCM 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL+V+I   +NW + +
Sbjct: 909 ----QLDVPLQVDIGTGSNWDQAH 928


>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
 gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
          Length = 930

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/986 (36%), Positives = 548/986 (55%), Gaps = 74/986 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFESYKSHRPPMPDDLREQIAPLHEMVEAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LARQASQKGIPVLISTGDKDMAQLVEPNITLINTMTNTILGPQEVEDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+L+ I  +  +I        K     + E  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLKEIYDSLDKIAPLGFRGSKTLAPKMEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV +    E L + + +  +L       EF + +  V      D  
Sbjct: 241 EVAFLSYQLATIKTDVELEKSCEELAISEPDTDKLYQLFSRYEFKRWLADVENGTWMDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + +      + TE K  A+                                         
Sbjct: 301 SGKSSAPAASKTEKKIEAV----------------------------------------- 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++   ++ ++Y  I+   D+ +W++KL +    +F   TD++D   ++ + ++ +     
Sbjct: 320 MAAPTLSAENYQTILEKADLDRWIEKLTSASIFAFDTETDSLDTQEARLVGMSFAIEPG- 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D  V              ++L+ +K   EN+  LKIG N+KYD  VL 
Sbjct: 379 YAAYLPLGHDYLDAPV---------QLPLNDVLAAMKPILENDKILKIGQNLKYDAEVLL 429

Query: 478 RYGISMRGF-EDIMLMSYVLDS--GRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
            Y I ++G   D ML SYVL+S  G   HD+ S+A++ L++     +EI    K  +  +
Sbjct: 430 NYDIELKGIAFDTMLESYVLNSVAGMGRHDMDSLAERHLNHKTVSFEEIAGKGKKQLTFN 489

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I+  Q   +A E+++V L L   L P+L  E KL HV+  ++ P++ V+ +ME  G+ I
Sbjct: 490 QIALEQAANYAAEDADVTLLLHQALYPQLEAEPKLNHVFREIEMPLVPVLVRMERKGVLI 549

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L   S EI+  L  LE+  ++L+GE+FNL+S KQL  ILF KL+ P   KT +G  
Sbjct: 550 DAAVLAAQSKEITARLAELEKEAFELAGEEFNLASTKQLQTILFEKLQLPVVKKTPSGAP 609

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    + + K +LE R L+K+KSTY D LP  I+ +TQRVHT Y  A T T
Sbjct: 610 STNEEVLEELALN-HALPKLLLEHRSLAKLKSTYTDKLPLMISTKTQRVHTSYHQAVTAT 668

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++T+ G++IR+AFI+    K+++ADYSQIELRI+AH+++   L   
Sbjct: 669 GRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTA 728

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+FGV +++V+   RR AK INF +IYG+S F LA QL IPR EA  
Sbjct: 729 FAEGKDIHRATAAEVFGVPLDEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQR 788

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+  Y+E T++   + GYVET+ GRR++  +I S     R   ER AINA
Sbjct: 789 YMDLYFERYPGVLRYMENTRHQAAEQGYVETLEGRRLYLADIKSSNGMRRKAAEREAINA 848

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI ++AMI+V   L+  K    ML+Q+HDELVFEV E E+ + +  I   ME+
Sbjct: 849 PMQGTAADIIKKAMIAVDAWLQTEKPHADMLMQVHDELVFEVKESELDSVTTKIRELMEQ 908

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                + L VPLKV++ + +NW E +
Sbjct: 909 ----SMQLDVPLKVDVGIGDNWDEAH 930


>gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 928

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
          Length = 928

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIELGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
 gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
          Length = 928

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------LQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQSIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
          Length = 928

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 546/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKIDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV  +++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
 gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
          Length = 928

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLQQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
 gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040]
          Length = 935

 Score = 1008 bits (2606), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/977 (40%), Positives = 585/977 (59%), Gaps = 52/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML+K +++++     +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLFKQVEDNKGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+   +FRN++Y  YKANRP  PE L+PQ PL R AT+AF I   EI+GFEADDIIA
Sbjct: 68  VIFDHSGKSFRNDMYDQYKANRPPAPEDLVPQFPLTREATRAFNIACKEIEGFEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +
Sbjct: 128 TLACQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVREKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE++L  A  IKQ KRR+ ++E  +   +
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEDLLDRAEEIKQPKRRQTLIEKRDQIEM 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D+ +   L+ L + D +   L+ FL  +EF  L  R+A     +A  I   
Sbjct: 248 SKRLVQLDCDMELDFTLDDLEVRDPDADTLLGFLAEMEFRTLSKRMADQLGREAPTIPEA 307

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                                               L+      
Sbjct: 308 PS---------------------------------------------AAAAALELPEAPG 322

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++  YT + + + +QQW+  +   G  +    T  ++   +  + I++  +  +     
Sbjct: 323 FDSAEYTTVRDAETLQQWIDLIREHGYVAVDTETTGLNEMIADLVGISLCVVPGQACYVP 382

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     +  S D        K+ L  LK   E++  LKIG N+KYD  +  R GI 
Sbjct: 383 LTHKTGNSDDLFGSDDLAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARNGID 442

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D ML+SY L  G   H + ++++++L +     K +L S KS+I  D++S     
Sbjct: 443 VTPIDDTMLLSYALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVSIEDAT 502

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+LW   +P+L  +++  VYE L++P++ V++QME  GI++D+D L ++S
Sbjct: 503 PYAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQHGIKVDRDTLSRMS 562

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              S+ + +LE  I++L+GE FN+ SPKQLG+ILF K+  P G K KTG +  T  D+ +
Sbjct: 563 NAFSQKMAALEAEIHELAGETFNVGSPKQLGEILFDKMSLPGGKKGKTGAY-ATGADILE 621

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++ +   +L+WRQLSK+KSTY D+L  HI+  T RVHT Y      TGRLAS +PN
Sbjct: 622 DLATEHTLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGANTGRLASSDPN 681

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++     L+S DYSQIELRILAH+A I  L Q F +  DIH 
Sbjct: 682 LQNIPVRSEEGRRIREAFVADEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHDIHA 741

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +E+++P +RR AK INF +IYGIS F LA  LRIPR EA  +I RYF RF
Sbjct: 742 MTASEVFDVPLEEMTPDIRRKAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDRYFERF 801

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI +Y++ T NF +++GYV+T+FGR+IH  EI + K    +  +RAAINAPIQG+AAD+
Sbjct: 802 PGIRQYMDDTVNFAKEHGYVQTLFGRKIHTPEI-AAKGPRASFAKRAAINAPIQGTAADV 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAM+ + +++    L  +MLLQ+HDEL+FEVPE+ +     +    ME A  P +++ 
Sbjct: 861 IRRAMVRMPEAI--AHLPARMLLQVHDELLFEVPEDHVEETISVAREIMEGAADPAVHMD 918

Query: 960 VPLKVNIKVSNNWQEEN 976
           V L V+     NW E +
Sbjct: 919 VKLVVDAGRGQNWAEAH 935


>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
 gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
          Length = 934

 Score = 1008 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/986 (37%), Positives = 539/986 (54%), Gaps = 70/986 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+     +   SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIM----QYTPSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +     A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFESYKSHRPPMPDDLRAQIEPLHEMVAAMGLPLLVIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV P   L +T+    +  E V  K+G+PP  ++   
Sbjct: 121 LAREASSKGMPVLISTGDKDMAQLVEPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+LE+I  N   I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLEDIYKNLEAIAPLGFRGSKTLAPKMEDNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV +  P E L + + +  +L +     EF + +  V      D  
Sbjct: 241 ELAFLSYQLATIKTDVELDKPCEELKVAELDADKLHALFSRYEFKRWLADVENGTWMDG- 299

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         KG       +     ++   +        +++E             
Sbjct: 300 --------------KGAKSAKAAESYRAPESQPAAKAKPAVPTLSAEN------------ 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++   + +WV+KL      +F   TD++D   ++ + ++ +    +
Sbjct: 334 ----------YETILDKAQLDRWVKKLSESTLFAFDTETDSLDTQEARLVGMSFAIEAGR 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S D         E+++ +K   ENE   KIG N+KYD  VL 
Sbjct: 384 -AAYLPVGHDYLDAPAQLSLD---------EVIAVMKPILENEKIGKIGQNLKYDAEVLL 433

Query: 478 RYGISMRGF-EDIMLMSYVLDS--GRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
            Y I ++G   D ML SYVL+S  G   HD+ S+A + L++     +EI    K  +  +
Sbjct: 434 NYDIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTFN 493

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q   +A E+++V L L   L P+L  E KL HV++ ++ P++ V+ +ME  G+ I
Sbjct: 494 QIPLEQAANYAAEDADVTLLLHQALYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLI 553

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L   S  I+  L  LE+  +DL+GE+FNL+SPKQL  ILF KL+ P   KT +G  
Sbjct: 554 DAAVLTAQSQVITARLAELEKQAFDLAGEEFNLASPKQLQTILFEKLQLPVIKKTPSGAA 613

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    + + K +LE R L+K+KSTY D LP  IN RTQRVHT Y  A T T
Sbjct: 614 STNEEVLEELALN-HALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTAT 672

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++T+ G++IR+AF++    K+++ADYSQIELRI+AH+++   L   
Sbjct: 673 GRLSSRDPNLQNIPVRTEEGRRIRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLLTA 732

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+FGV +E+V+   RR AK INF +IYG+S F LA QL IPR EA  
Sbjct: 733 FAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQR 792

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+  Y+E T+    + GYVET+ GRR++  +I S     R   ER AINA
Sbjct: 793 YMDLYFERYPGVLRYMENTRLQASERGYVETLEGRRLYLADIKSSNGMRRKAAEREAINA 852

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI ++AMI+V   LE  K +  ML+Q+HDELVFEV E E+      +   ME+
Sbjct: 853 PMQGTAADIIKKAMIAVDNWLETEKPSADMLMQVHDELVFEVKESELEKVQAKVQELMEQ 912

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                + L VPLKV + V +NW E +
Sbjct: 913 ----SMTLDVPLKVEVGVGSNWDEAH 934


>gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
 gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
          Length = 1000

 Score = 1008 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1001 (43%), Positives = 621/1001 (62%), Gaps = 33/1001 (3%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKES 56
            +Q  +H+FLVDGSSF++RA++ +    RK     D LP  A+  FC  L + +++     
Sbjct: 8    LQPGDHVFLVDGSSFVFRAYFQSINQDRKYNFRSDRLPTGAVRLFCTKLLQFVRDGAVGI 67

Query: 57   IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              +H A+IFD    +FR E+YPDYKANR + PE L+PQ PL+R A +AFG+  +E   +E
Sbjct: 68   KPTHLAIIFDKSEDSFRKELYPDYKANRSEPPEELIPQFPLMREAVRAFGLIPVEQARYE 127

Query: 117  ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----------KIDIE 166
            ADD+IATY   A K G  V I+S DKDLMQ+V P   +YD    E          +I + 
Sbjct: 128  ADDLIATYADQAVKAGADVLIVSADKDLMQMVGPKVAMYDPASGESGGRGARPERRIGVG 187

Query: 167  HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
             V++ +G+PPEK+  +QAL GDS DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ
Sbjct: 188  EVLEYFGVPPEKVTDVQALAGDSTDNVPGVPGIGIKTAAQLIGEYGDLETLLARAGEIKQ 247

Query: 227  KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             KRRE++L  AE AR+S+ LV L  DV + +PLE L+LE  +  RLI+FLKA+EFT +  
Sbjct: 248  PKRRESLLTNAEAARISKTLVTLVRDVSVEVPLEDLVLEAPDAKRLIAFLKAMEFTTITR 307

Query: 287  RVATTYDCDAANIE--PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
            RVA  Y  +AA +E  P +               E D        +  ++S     ++  
Sbjct: 308  RVAEAYGVEAAEVEADPRLAPAGLFSPAAPTSAEETDGAEPATGGEAPAVSAVAQAMDGT 367

Query: 345  QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
             TP  L   R       P++  +Y  +++  +++ W  K +  G  +F   T+++D   +
Sbjct: 368  LTPSDLAHARASTARTIPVDRTAYRTVLDLAELKAWCAKAQDQGLLAFDTETNSLDPMQA 427

Query: 405  KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFE 458
              + ++++    +          +I L+   + D              ++ ++ LK   E
Sbjct: 428  DLVGVSLALSPNE--------ACYIPLAHTGAGDGLFSEGQLPGQIPVRDAIAALKGVLE 479

Query: 459  NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-- 516
            ++  LK+GHN+KYD+LVL R+GI +  F+  M MSY LD+G++ H +  ++   L +   
Sbjct: 480  DKGTLKVGHNVKYDQLVLARHGIDVAPFDCTMCMSYALDAGKNGHGMDELSVLHLGHQPI 539

Query: 517  -RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
               E+    K  +  DK++      +A E+++V L+LW +L+P+L  E    VYE L++P
Sbjct: 540  AFSEVTGKGKGKVTFDKVALEPATHYAAEDADVTLRLWQVLKPRLAAEGRTTVYETLERP 599

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
            +I V+++ME  GI ID+ +L ++S+E ++    +E+ I +L+GE+ N+ SPKQ+GDILF 
Sbjct: 600  LIAVLARMESRGISIDKAMLARLSSEFAQGAARIEDEIAELAGERLNVGSPKQMGDILFG 659

Query: 636  KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
            K+  P G KT TG W T A  LE++    + + + ILEWRQLSK++STY D+LPN +N +
Sbjct: 660  KMGLPGGTKTATGMWSTKATALEELAEAGHKLPQKILEWRQLSKLRSTYTDALPNFVNPQ 719

Query: 696  TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
            T+RVHT Y+LA+T TGRL+S +PNLQNIPI+T+ G++IRRAF++     L+SADYSQIEL
Sbjct: 720  TRRVHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAEEGNLLVSADYSQIEL 779

Query: 756  RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
            R+LA IA+I  L   F   LDIH M A+E+F V ++ +  ++RR AK INF IIYGIS F
Sbjct: 780  RLLAEIAEIPALRTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINFGIIYGISAF 839

Query: 816  RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
             LA QL IPR EA  YIKRYF RFPGI +Y+E+TK F R++GYVET+FGRR HY EI + 
Sbjct: 840  GLANQLGIPREEAGQYIKRYFERFPGIRDYMEETKTFCREHGYVETLFGRRCHYPEIAAK 899

Query: 876  KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
              SIR  NERAAINA +QG+AADI RRAMI +  +LE  KL+ +MLLQ+HDELVFEVPE 
Sbjct: 900  NPSIRAFNERAAINARLQGTAADIIRRAMIRMEPALEKAKLSARMLLQVHDELVFEVPEG 959

Query: 936  EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            E      ++   ME A  P + L VPLKV+ + + NW+E +
Sbjct: 960  EADATIPVVRQCMETASAPAVALAVPLKVDARAAKNWEEAH 1000


>gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
 gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
          Length = 1025

 Score = 1008 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/1004 (42%), Positives = 647/1004 (64%), Gaps = 38/1004 (3%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++   E+  +H A
Sbjct: 30   KGDHIFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLA 89

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD   VTFRN +YP+YKA+RP  PE L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 90   IIFDKSEVTFRNHLYPEYKAHRPPAPEDLIPQFALIREAVRAFDLPCLEQSGFEADDLIA 149

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ +I +  VI+K+G+PP K+V +
Sbjct: 150  TYVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFGVPPNKVVEV 209

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ KRRE ++E AE AR+
Sbjct: 210  QALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKARI 269

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300
            SRKLV+L   V + +PLE L + + +  +L++FLKA+EFT L  RVA     D +++E  
Sbjct: 270  SRKLVLLDDHVQLEVPLEELAVHEPDARKLVAFLKAMEFTTLTRRVADYAQIDPSDVEAE 329

Query: 301  -------PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-------- 345
                   P +           A +    + +       +  S Q   +N+ +        
Sbjct: 330  TALKSAVPPLAKSAPPSGDLFAGQEPSPQPSPAGGGGSAPASGQGGPLNAGRGRDGRPGV 389

Query: 346  --TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
              +P+ L   R +   + P++  +Y  + +  ++Q ++ ++   G  + +    ++D   
Sbjct: 390  VLSPETLVAARAEAARKIPVDRTAYKTLHSLDELQGFIARIHDTGIVALEAAATSIDPMQ 449

Query: 404  SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKK 455
            ++ I +A++            +  +I L    S D  G             ++ L  LK 
Sbjct: 450  AELIGLALALGPN--------DACYIPLPHKQSGDGDGLFAAGLAPDQIGPRDALDALKP 501

Query: 456  FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              E+    K+G  IK+  ++L ++G+++R  +D  LMSY LD+GR SH + ++++  L +
Sbjct: 502  ILESAGVAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHALDALSESNLGH 561

Query: 516  TR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            T     E+  + K+ I  D++   +   +A E ++V L+L  +L+P+L+   +  VYE L
Sbjct: 562  TLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLRLARVLKPRLVAGSMTAVYETL 621

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            ++P++ V+++ME  GI ID+ +L ++SA+ ++    +E  I +L+GE  N+ SPKQLGDI
Sbjct: 622  ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDI 681

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF K+  P G+KTKTG W T+AQ L+++    +   + IL+WRQ+SK++STY D+LPN++
Sbjct: 682  LFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNYV 741

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            + +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P  KL+SADYSQ
Sbjct: 742  HPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQ 801

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR+L+ +A +  L + F++ +DIH M A+E+FGV +E +  ++RR AK INF IIYGI
Sbjct: 802  IELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGI 861

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL IPR EA  YIKRYF RFPGI  Y+++T++F R +GYV T+FGR+ HY +I
Sbjct: 862  SAFGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRDFCRTHGYVTTLFGRKCHYPDI 921

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
             +   SIR  NERAAINA +QGSAADI RRAM+ +  +L + KL+ +MLLQ+HDEL+FEV
Sbjct: 922  KASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEV 981

Query: 933  PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            PE E+     ++   M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 982  PEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNWDEAH 1025


>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
 gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
          Length = 928

 Score = 1008 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 546/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++  YVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQSYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV  +++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
          Length = 928

 Score = 1008 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKXEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAR------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGRGENWDQAH 928


>gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14]
          Length = 928

 Score = 1007 bits (2603), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 546/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P  L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+F + +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFSLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
 gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
          Length = 934

 Score = 1007 bits (2603), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/986 (37%), Positives = 542/986 (54%), Gaps = 70/986 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+     +   SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIM----QYSPSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV P   L +T+    +  E V  K+G+PP  ++   
Sbjct: 121 LAREASSKGMPVLISTGDKDMAQLVEPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+LE I  +   I        K     + E  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLEAIYNDLEAIAPLGFRGSKTLAPKMAENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV +  P E L + + +  +L       EF + +  V      DA 
Sbjct: 241 ELAFLSYQLATIKTDVELEKPCEELKVSELDADKLHQLFSRYEFKRWLVDVENGSWMDAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                    +    S +TP+     + + 
Sbjct: 301 GAKP------------------------------------SKAAESYRTPENKPAAKSKP 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ ++Y  I++  ++  WV+KL      +F   TD++D   ++ + ++ +  +  
Sbjct: 325 TA-PTLSAENYQTILDKAELALWVKKLSEASLFAFDTETDSLDTQEARLVGMSFAI-EAG 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D  V  S D         ++++ +K   ENE   KIG N+KYD  VL 
Sbjct: 383 HAAYLPIGHDYLDAPVQLSLD---------DVIAVMKPILENEKIGKIGQNLKYDAEVLE 433

Query: 478 RYGISMRGF-EDIMLMSYVLDS--GRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
            YGI ++G   D ML SYVL+S  G   HD+ S+A + L++     +EI    K  +  +
Sbjct: 434 NYGIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTFN 493

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q   +A E+++V L L   L P+L  E KL HV++ ++ P++ V+ +ME  G+ I
Sbjct: 494 QIPLEQAANYAAEDADVTLLLHQALFPQLEEEPKLAHVFQNIEMPLVPVLVRMERKGVLI 553

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L   S  I+  L  LE+  ++L+GE+FNL+SPKQL  ILF KL+ P   KT +G  
Sbjct: 554 DAPTLAAQSKIITARLAELEKQAFELAGEEFNLASPKQLQTILFEKLQLPVIKKTPSGAA 613

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    + + K +LE R L+K+KSTY D LP  IN +T RVHT Y  A T T
Sbjct: 614 STNEEVLEELALN-HELPKLLLEHRSLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTAT 672

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++T+ G++IR+AFI+    K+++ADYSQIELRI+AH+++   L   
Sbjct: 673 GRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVMAADYSQIELRIMAHLSQDKGLLTA 732

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH+  AAE+FGV +++V+   RR AK INF +IYG+S F LA QL IPR EA  
Sbjct: 733 FAEGKDIHKATAAEVFGVPLDQVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQR 792

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+  Y+E T+    + GYVET+ GRR++  +I S     R   ER AINA
Sbjct: 793 YMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLADIKSSNGMRRKAAEREAINA 852

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI ++AMI+V   L+  K    ML+Q+HDELVFEV E E+      +   ME+
Sbjct: 853 PMQGTAADIIKKAMIAVDHWLQTEKPEADMLMQVHDELVFEVKESELEKVQAKVQELMEQ 912

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                + L VPLKV + V  NW E +
Sbjct: 913 ----SMKLDVPLKVEVGVGMNWDEAH 934


>gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
 gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
          Length = 1027

 Score = 1007 bits (2603), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1006 (42%), Positives = 647/1006 (64%), Gaps = 40/1006 (3%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++   E+  +H A
Sbjct: 30   KGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLA 89

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +IFD   VTFRN +YP+YKA+RP  PE L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 90   IIFDKSEVTFRNALYPEYKAHRPPAPEDLIPQFGLIREAVRAFDLPCLEQSGFEADDLIA 149

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ +I +  VI+K+G+PP K+V +
Sbjct: 150  TYVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFGVPPNKVVEV 209

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ KRRE ++E AE AR+
Sbjct: 210  QALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKARI 269

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300
            SRKLV+L   V + +PL  L + + +  +L++FLKA+EFT L  RVA     D +++E  
Sbjct: 270  SRKLVLLDDHVKLEVPLAELAVHEPDARKLVAFLKAMEFTTLTRRVAEYAQIDPSDVEAE 329

Query: 301  -------PVVLDINTTENKG--IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ------ 345
                   P +    +T   G   A +    + +       +  S     +N+ +      
Sbjct: 330  TALKSAVPPLARSGSTSASGDLFAGQEPSPQPSPASGRGGAPDSGPGGPLNAGRGRDGKP 389

Query: 346  ----TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
                +P+ L   R +   + P++  +Y  +    ++   + ++   G  + + +  ++D 
Sbjct: 390  GVVLSPEALVAARAEAARKVPVDRTAYKTLRTLDELHAVIARIHDSGVVALEAVATSIDP 449

Query: 402  FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYL 453
              ++   +A++            +  +I L    + D  G            T++ L  L
Sbjct: 450  MQAELTGVALALGPN--------DACYIPLGHKQAGDGDGLFAAGLAPDQLGTRDALDAL 501

Query: 454  KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            K   E+    K+G  IK+  ++L ++G+++R  +D  LMSY LD+GR SH + ++++  L
Sbjct: 502  KPVLESAGIAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHGLDALSESNL 561

Query: 514  SYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
             +T     E+  + K+ I +D++   +   +A E ++V L+L  +L+P+L+   +  VYE
Sbjct: 562  GHTLHTLTELTGTGKNKIGLDQVGIDRATAYAAERADVSLRLARVLKPRLVAGSMTAVYE 621

Query: 571  RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
             L++P++ V+++ME  GI ID+ +L ++S++ ++    +E  I +L+GE  N+ SPKQLG
Sbjct: 622  TLERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIEAEIRELAGEDINIGSPKQLG 681

Query: 631  DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            DILF K+  P G+KTKTG W T+AQ L+++    +   K ILEWRQ+SK++STY D+LPN
Sbjct: 682  DILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPKKILEWRQVSKLRSTYTDALPN 741

Query: 691  HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            +++ +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P  KL+SADY
Sbjct: 742  YVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHKLVSADY 801

Query: 751  SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            SQIELR+L+ +A +  L + F++ +DIH M A+E+FGV +E +  ++RR AK INF IIY
Sbjct: 802  SQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIY 861

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            GIS F LA QL IPR EA  YIKRYF RFPGI  Y+++T++F R +GYV T+FGR+ HY 
Sbjct: 862  GISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRAHGYVTTLFGRKCHYP 921

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            +I +   SIR  NERAAINA +QGSAADI RRAM+ +  +L + KL+ +MLLQ+HDEL+F
Sbjct: 922  DIKASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIF 981

Query: 931  EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            EVPE E+     ++   M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 982  EVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNWDEAH 1027


>gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70]
 gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218]
          Length = 928

 Score = 1006 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +                        T    Q +S++D+  ++ +              
Sbjct: 301 GAK------------------------TAAKPQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S          +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAPDQISH---------ERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
 gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
          Length = 932

 Score = 1006 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/985 (37%), Positives = 556/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P       T NK                                             
Sbjct: 301 KERPT----GQTSNKAF----------------------------------VAAEPAPAA 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K +  W+++L+     +F   TD +D   S  I ++ +     
Sbjct: 323 EVTAVLSQENYQTILDEKSLADWIERLKKSEVFAFDTETDGLDTLSSNLIGLSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E+E  LK+G N+K+D+ +L 
Sbjct: 382 EAAYLPLAHDYLDAPAQLDRD---------WVLATLKPLLEDEKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVL+S    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIELRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEEAGPYASEDADVTLQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDEGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L ++ +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQESEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V +NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGDNWDQAH 932


>gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
 gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
          Length = 928

 Score = 1006 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 546/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P  L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGPAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
          Length = 929

 Score = 1006 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/986 (36%), Positives = 548/986 (55%), Gaps = 75/986 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHAFPPLTN-STGEPTGAMYGVLNMLRSLVMQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQLVEAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEKEG +V I + DKD+ QLV+P   L +T+    +  E V++K+G+PPE ++   
Sbjct: 121 LALQAEKEGRSVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVVEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G +++I  N  +I        K     +  + 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGGIDDIFANLDKIAGLSFRGAKTLANKLEPHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV +      L +   +  +L       EF + ++ VA      A 
Sbjct: 241 DVAYLSYKLATIKTDVELDKTCVALSVAKPDTEKLHQLFSRYEFKRWLSDVANGDWLAAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + +                                             T          +
Sbjct: 301 DKK------------------------------------------LASTGSDDSASVESE 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                + +D+Y  I++ K   +W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 319 SVSSTLPSDNYQTILDQKSFDEWIEKLKRAPVFAFDTETDSLDTLTANLVGMSFAITAG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           D     +   ++       +D+         +L+ LK   E+ + LKIG NIK+D  VL 
Sbjct: 378 DAAYLPLGHDYLGAPEQLDRDA---------VLAALKPLLEDSNLLKIGQNIKFDCGVLV 428

Query: 478 RYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
           RYGI ++G   D ML SYVL+S  G   HD+ S+A++ L+Y     +EI    K+ +  +
Sbjct: 429 RYGIELQGIAYDTMLESYVLNSVAGMGRHDMDSLAERHLNYKTTTFEEIAGKGKNQLTFN 488

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQI 590
           ++   Q   +A E+++V LQL  ++ P+L     L  V+   + P+I V+S+ME  G+ I
Sbjct: 489 QVPVEQAAMYAAEDADVTLQLHQVIWPQLEKVPALEKVFLETEMPLIMVLSRMERAGVLI 548

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           + D+L + S EI+  L  LE+  ++L+GE FNL+SPKQL  ILF KL  P   KT  G  
Sbjct: 549 NSDILAEHSKEIAVRLDELEKEAHELAGEVFNLASPKQLQTILFEKLNLPVVKKTPGGAP 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    + + K ILE R L+K+KSTY D LP  ++  T+RVHT Y  A T T
Sbjct: 609 STNEEVLEEL-VDHHELPKVILEHRGLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAVTAT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AFI+    ++++ADYSQIELRI+AH+++   L + 
Sbjct: 668 GRLSSRDPNLQNIPVRNEEGRRIRQAFIASEGYRIMAADYSQIELRIMAHLSQDQGLLKA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+F V +E+V+ + RR AK INF +IYG+S F L+ QL IPR EA  
Sbjct: 728 FAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQR 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+  Y+E+T+    + GYVET+ GRR++  +I S   + R   ER AINA
Sbjct: 788 YMDLYFERYPGVLAYMERTREQAEEQGYVETLAGRRLYLPDIKSRNGTRRKAAEREAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI ++AMI+V   +       +M++Q+HDELVFEV E E+    Q I   MEK
Sbjct: 848 PMQGTAADIIKKAMIAVDDWIISEAPKVRMIMQVHDELVFEVHESELENTEQKIRELMEK 907

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           + +    L VPL+V++ + +NW + +
Sbjct: 908 SVV----LDVPLQVDVGIGDNWDQAH 929


>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
           [Shigella flexneri 2002017]
 gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671]
 gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71]
 gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304]
          Length = 928

 Score = 1006 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEVGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +                        T    Q +S++D+  ++ +              
Sbjct: 301 GAK------------------------TAAKPQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S          +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAPDQISH---------ERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
 gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
          Length = 935

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/977 (40%), Positives = 582/977 (59%), Gaps = 52/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++     +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+   +FRN++Y  YKANRP  PE L+PQ PL R AT+AF I   EI+GFEADDIIA
Sbjct: 68  VIFDHSGKSFRNDMYDLYKANRPPAPEDLVPQFPLTREATRAFNIACKEIEGFEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +
Sbjct: 128 TLACQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVREKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE++L  A  IKQ KRR+ ++E  E   +
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEDLLDRAEEIKQPKRRQTLIEKREQIEM 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D+ +   L+ L + D +   L+ FL  +EF  L  R+A     +A  I   
Sbjct: 248 SKRLVQLDCDMELDFTLDDLEVRDPDAETLLGFLAEMEFRTLSKRMADQLGREAPTIPE- 306

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                       A  T        +   F S                             
Sbjct: 307 ------------APSTAAAALELPEAPGFDSAE--------------------------- 327

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                YT + + + +QQW+  +   G  +    T  ++   +  + I +  +  +     
Sbjct: 328 -----YTTVRDAETLQQWIDLIREHGYVAVDTETTGLNEMIADLVGICLCVVPGQACYVP 382

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     +  S D        +  L  LK   E++  LKIG N+KYD  +  R GI 
Sbjct: 383 LTHKAGNSDDLFGSDDLAEGQMPLETALEMLKPVLEDDAILKIGQNMKYDAKIFARNGID 442

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D ML+SY L  G   H + ++++++L +     K +L S KS+I  D++      
Sbjct: 443 ITPIDDTMLLSYALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVPIDDAT 502

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+LW   +P+L  +++  VYE L++P++ V++QME  GI++D+D L ++S
Sbjct: 503 PYAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQNGIKVDRDTLSRMS 562

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              S+ + +LE  I++L+GE FN+ SPKQLG+ILF KL  P G K KTG +  T  D+ +
Sbjct: 563 NAFSQKMAALEAEIHELAGESFNVGSPKQLGEILFDKLSLPGGKKGKTGAY-ATGADILE 621

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++ +   +L+WRQLSK+KSTY D+L  HI+  T RVHT Y      TGRLAS +PN
Sbjct: 622 DLATEHELPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGANTGRLASSDPN 681

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++     L+S DYSQIELRILAH+A I  L Q F +  DIH 
Sbjct: 682 LQNIPVRSEEGRRIREAFVAEEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHDIHA 741

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +E+++P++RR AK INF +IYGIS F LA  LRIPR EA  +I RYF RF
Sbjct: 742 MTASEVFDVPLEEMTPEIRRKAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDRYFERF 801

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI +Y++ T NF + +GYV+T+FGR+IH  EI + K    +  +RAAINAPIQG+AAD+
Sbjct: 802 PGIRQYMDDTVNFAKDHGYVQTLFGRKIHTPEI-AAKGPRASFAKRAAINAPIQGTAADV 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAM+ +  ++    L  +MLLQ+HDEL+FEVPE+ +     +    ME A  P +++ 
Sbjct: 861 IRRAMVRMPDAI--AHLPARMLLQVHDELLFEVPEDHVDETISVAREIMEGAADPAVHMD 918

Query: 960 VPLKVNIKVSNNWQEEN 976
           V L V+     NW E +
Sbjct: 919 VKLVVDAGRGQNWAEAH 935


>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10]
 gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
 gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10]
 gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
 gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
 gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 932

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/985 (37%), Positives = 557/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLLLVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D+ 
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWLADVEAGKWLDSK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P                       T +TS  S ++  T+                  
Sbjct: 301 KDRP-----------------------TGQTSSQSFVAADTAPTAE-------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K +  W+++L+     +F   TD +D      I ++ +     
Sbjct: 324 -VTAVLSQENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E++  LK+G N+K+DK +L 
Sbjct: 382 EAAYLPLAHDYLDAPPQLDRD---------WVLATLKPLLEDDKALKVGQNLKFDKSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI ++G   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V  NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGANWDQAH 932


>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
 gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
          Length = 932

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/985 (37%), Positives = 557/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D+ 
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWLADVEAGKWLDSK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P                       T +TS  S ++  T+                  
Sbjct: 301 KDRP-----------------------TGQTSSQSFVAADTAPTAE-------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K +  W+++L+     +F   TD +D      I ++ +     
Sbjct: 324 -VTAVLSQENYQTILDEKALSDWIERLKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E++  LK+G N+K+DK +L 
Sbjct: 382 EAAYLPLAHDYLDAPPQLDRD---------WVLATLKPLLEDDKALKVGQNLKFDKSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI ++G   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V  NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGANWDQAH 932


>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
 gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
          Length = 932

 Score = 1006 bits (2600), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/985 (37%), Positives = 558/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDEQLHQLFSRYEFKRWLADVEEGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P     N T                               + +E  P          
Sbjct: 301 KERPTGQTSNKT------------------------------FVATEPAPAAEVTA---- 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K +  W+++L+     +F   TD +D   +  I ++ +     
Sbjct: 327 ----VLSQENYHTILDEKSLADWIERLKKADVFAFDTETDGLDTLSNNLIGLSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E++  LK+G N+K+D+ +L 
Sbjct: 382 EAAYLPLAHDYLDAPAQLDRD---------WVLATLKPLLEDDKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVL+S    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIELRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYASEDADVTLQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPQGYRIMAADYSQIELRIMAHLSQDEGLLTAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V +NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGDNWDQAH 932


>gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
 gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
          Length = 928

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 548/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                EK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREVEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +                        T    Q +S++D+  ++ +              
Sbjct: 301 GAK------------------------TAAKPQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S          +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAPDQISH---------ERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
 gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
 gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
 gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
          Length = 932

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/985 (37%), Positives = 557/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D+ 
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWLADVEAGKWLDSK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P                       T +TS  S ++  T+                  
Sbjct: 301 KDRP-----------------------TGQTSSQSFVAADTAPTAE-------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K +  W+++L+     +F   TD +D      I ++ +     
Sbjct: 324 -VTAVLSQENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E++  LK+G N+K+DK +L 
Sbjct: 382 EAAYLPLAHDYLDAPPQLDRD---------WVLATLKPLLEDDKALKVGQNLKFDKSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI ++G   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   MEK 
Sbjct: 852 QGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELMEK- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V  NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGANWDQAH 932


>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255]
 gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
          Length = 932

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/977 (40%), Positives = 594/977 (60%), Gaps = 52/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS FI+RA++A P L+RK DGLPV A++GFCNML+K++++ +     +H  
Sbjct: 5   KGHHLHLIDGSGFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLFKIIEDQKGSDAPTHLV 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR++IYP+YK NRP  PE L+PQ PL R AT+AFG+  IE +GFEADDI+A
Sbjct: 65  VVFDAKGKTFRSDIYPEYKMNRPPAPEDLIPQFPLTRDATRAFGLACIEQEGFEADDIMA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTI+S+DKDLMQLV     +YD +K ++I  E V +K+G+ P +++ +
Sbjct: 125 TLAVQAREAGGQVTIVSSDKDLMQLVGNGVEMYDAMKNKRIGPEQVEEKFGVAPNRVIDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GDS+DN+PG PGIG KTAALL+ EYG+L+++L  AS IKQ KRRE ++E A+  R 
Sbjct: 185 QSLAGDSVDNVPGAPGIGVKTAALLINEYGDLDSLLERASEIKQPKRRETLIENADQIRT 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV L+TD+ +    +   ++  +   ++ FL  +EF  +  R+A      A  I   
Sbjct: 245 SRDLVTLKTDMEMDCDFDDFQVQAPDPEVVLKFLAEMEFRTMSARIANKLGVSAPEI--- 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                    +S   +  DQ ++  S                   
Sbjct: 302 -------------------------SSDRINNEDQITEAES-----------------IS 319

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           IN + Y  I N  D+ +WV K+   G  +    T  ++      + I +S  +  +    
Sbjct: 320 INTEKYELIDNINDLNRWVTKIYQRGYVAVDTETTGLNDMIVDLVGICLSV-EIGEACYI 378

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V     +  +              E L  L+   ++   +KIG N+KYD  +  RY ++
Sbjct: 379 PVGHTNGENDLFGGASLCNGQINLDEALEILRPVLQDPSIIKIGQNVKYDTKIFARYDVN 438

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D ML+SY ++ G+ +H +  +++++L++     K +L S KS+I  DK+S +   
Sbjct: 439 LAPVDDTMLLSYAINGGKHNHGMDYLSERYLNHKPISIKTLLGSGKSAITFDKVSINDAV 498

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+LW L +P L    +  +YE L++P+I V+++ME+ GI++D++ L ++S
Sbjct: 499 NYAAEDADITLRLWKLFKPMLHESSVTKIYETLERPLIPVLAKMEMNGIKVDRNTLSRMS 558

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++++  LE  IY+L+G+ FN+ SPKQLG+ILF KL+ P G K KTG + T    LE 
Sbjct: 559 NNFAQSMSGLEAEIYNLAGQTFNVGSPKQLGEILFDKLELPGGKKGKTGAYGTGVDVLED 618

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +L+WRQ+SK+KSTY D+L  HIN  T RVHT Y ++   TGRL+S +PN
Sbjct: 619 LASEGHELPVKVLDWRQMSKLKSTYTDALQGHINPNTGRVHTSYVISGASTGRLSSTDPN 678

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G+KIR AFI+     L+S DYSQIELRILAHIAKI  L Q F    DIH 
Sbjct: 679 LQNIPIRSEAGRKIREAFIAEEGNVLLSLDYSQIELRILAHIAKIDTLKQAFHEGQDIHA 738

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+++F V +E + P +RR AK INF +IYGIS F LA  LRIPR EA  +I  YF RF
Sbjct: 739 LTASQMFNVPLENMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRKEAQSFIDTYFERF 798

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++T +F ++NGYVET+FGR+IH  EIN+ K       +RAAINAPIQG+AAD+
Sbjct: 799 PGIRTYMDETVSFAKENGYVETLFGRKIHTSEINA-KGPQAGFAKRAAINAPIQGTAADV 857

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAM+ +  ++    L  KMLLQ+HDEL+FEV ++ +   ++++ + MEKA  P + L 
Sbjct: 858 IRRAMVQMPNAI--SHLPAKMLLQVHDELIFEVNKDALNETTEVVRNIMEKASEPVVKLD 915

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+    NNW + +
Sbjct: 916 VPLVVDAGFGNNWADAH 932


>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
 gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
 gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
          Length = 932

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/985 (37%), Positives = 557/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D+ 
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWLADVEAGKWLDSK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P                       T +TS  S ++  T+                  
Sbjct: 301 KDRP-----------------------TGQTSSQSFVAADTAPTAE-------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K +  W+++L+     +F   TD +D      I ++ +     
Sbjct: 324 -VTAVLSQENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E++  LK+G N+K+DK +L 
Sbjct: 382 EAAYLPLAHDYLDAPPQLDRD---------WVLATLKPLLEDDKALKVGQNLKFDKSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI ++G   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V  NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGANWDQAH 932


>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
 gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
           exonuclease [Shigella flexneri 2a str. 301]
          Length = 928

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEVGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +                        T    Q +S++D+  ++ +              
Sbjct: 301 GAK------------------------TAAKPQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S          +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAPDQISH---------ERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEHADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
 gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
          Length = 930

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/986 (36%), Positives = 541/986 (54%), Gaps = 74/986 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LACEASRKGMPVLISTGDKDMAQLVEPNITLINTMNNTILGPDEVKEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+LE I  +   I        K     + E  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLEAIYNDLEAIAPLGFRGSKTLAPKMAENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV +    E L +   +  +L       EF + +  V      +  
Sbjct: 241 DVAFLSYQLATIKTDVELEKTCEELQVAQPDVDKLHQLFSRYEFKRWLADVENGTWMEGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                             SS     +   S   P    +  L  
Sbjct: 301 G---------------------------------SSAKPSPTPAASPVKPSNPTVPTL-- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                   ++Y  I+   D+++WV+KL      +F   TD++D   ++ + ++ +     
Sbjct: 326 ------CAENYQTILEKADLERWVEKLSKASLFAFDTETDSLDTQEARLVGMSFAIEPG- 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D  V             +E+L  +K   E+E+ LKIG N+KYD  VL 
Sbjct: 379 HAAYLPLGHDYLDAPV---------QLPLEEVLELMKPILESENILKIGQNLKYDAEVLE 429

Query: 478 RYGISMRGF-EDIMLMSYVLDS--GRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
            Y I ++G   D ML SYVL+S  G   HD+ S+A + L++     +EI    K  +  +
Sbjct: 430 NYDIELKGIGYDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTFN 489

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I+  +   +A E+++V L L   L P+L  E KL H+++ ++ P++ V+ +ME  G+ I
Sbjct: 490 QIALEEAANYAAEDADVTLLLHQALYPQLEAEPKLNHIFQNIEMPLVPVLVRMERKGVLI 549

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D ++L   S  I+  L  LE+  ++L+GE+FNL+SPKQL  ILF KL+ P   KT +G  
Sbjct: 550 DANVLAAQSKVITARLAELEKEAFELAGEEFNLASPKQLQTILFEKLQLPVIKKTPSGAA 609

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    + + K +LE R L+K+KSTY D LP  IN RTQRVHT Y  A T T
Sbjct: 610 STNEEVLEELALN-HALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTAT 668

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++T+ G++IR+AFI+    K+++ADYSQIELRI+AH+++   L   
Sbjct: 669 GRLSSRDPNLQNIPVRTEEGRRIRQAFIAREGYKVMAADYSQIELRIMAHLSQDKGLLTA 728

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH+  AAE+FGV +E+V+   RR AK INF +IYG+S F LA QL IPR EA  
Sbjct: 729 FAEGKDIHKATAAEVFGVPLEQVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQR 788

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+  Y+E T+    + GYVET+ GRR++  +I S     R   ER AINA
Sbjct: 789 YMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLADIKSSNGMRRKAAEREAINA 848

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI ++AMI+V   L+  K    ML+Q+HDELVFEV E E+      +   ME+
Sbjct: 849 PMQGTAADIIKKAMIAVDNWLQTEKPHADMLMQVHDELVFEVKESELERVQAQVQSLMEQ 908

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                + L VPLKV++ + +NW E +
Sbjct: 909 ----SMKLDVPLKVDVGIGDNWDEAH 930


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/980 (35%), Positives = 543/980 (55%), Gaps = 54/980 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             ++   LVDGSS+++RAF+A P L+    G    AI G  NM+ KLL+  + E      
Sbjct: 9   NPDSPFILVDGSSYLFRAFHAMPPLTNTK-GHATGAIFGVINMIGKLLEQYQPER----I 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD     FR+E+Y DYKA+RP +P+ L  Q+  +    +A GIP + I G EADD++
Sbjct: 64  AVVFDAKGKNFRHELYEDYKAHRPPMPDELRIQIEPIHEIIKALGIPLLVIDGVEADDVM 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  + A +      + + DKD+ QLV+    L +T+ +  +  + V +K+ + PE+++ 
Sbjct: 124 GTLAHQATQAKMDALLSTGDKDMAQLVNEHITLVNTMNDTLMTPDSVFEKFHVKPEQIID 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GDS DNIPGIP  G KTAA  + EYG+++N++ +A  IK  K  EN+    E  +
Sbjct: 184 YLALMGDSSDNIPGIPKCGPKTAAKWISEYGSIDNLIEHAEEIKG-KIGENLRANLEQLK 242

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS++L  +R D  + I L  +   + +   L +     +    + RV             
Sbjct: 243 LSQQLTTIRLDCDLPIALNDIKRHEADMEALEALFSEYDLRNWLTRVLKG---------- 292

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
              ++  +++ G    +E   +   K +  +S S +T K +S+                 
Sbjct: 293 ---ELPFSKSSGRKAHSETVTNGQSKKAN-TSPSTETPKADSQP---------------- 332

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  IV+     QW++KLE     +    T +++A  +K + ++ +  ++KD  +
Sbjct: 333 ------YETIVDWHTFDQWLKKLEASDVFAIDTETTSLNAMEAKIVGVSFAYAEKKDQ-A 385

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           ++    ++ L+     D   +    +E+L+ LK   EN    K+G N KYD  +    GI
Sbjct: 386 WQNFAAYVPLTHDY--DGAPEQLPIQEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNAGI 443

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537
            ++G   D ML SY  +S  + H++  +A  +L++     K+I  + K     ++I    
Sbjct: 444 EVQGMAYDTMLESYCFNSVATRHNMDDLALTYLNHSTIHFKDIAGTGKKQKTFNQIELET 503

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E++++ LQL   L PKL  E  L  V+E ++ P++ V+++ME  G+ ID+ +L 
Sbjct: 504 ASPYAAEDADITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLA 563

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E+ + L  LE+  + ++G  FNL+S KQL ++LF +L+ P   KT  GQ  T    
Sbjct: 564 DQSYELGQKLTELEQKAHLIAGTPFNLNSSKQLQEVLFERLELPIVKKTPKGQPSTAEPV 623

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L Q+    + +   ILE+R L+K+KSTY DSLP  IN++T RVHT Y  A   TGRL+S 
Sbjct: 624 LVQLAEDGHEMPNLILEYRSLAKLKSTYTDSLPKQINQQTGRVHTSYQQAVASTGRLSST 683

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI++  G++IR+AFI+ P  +L+++DYSQIELRI+AH++    L + F    D
Sbjct: 684 EPNLQNIPIRSAEGRRIRQAFIAQPGYRLMASDYSQIELRIMAHLSGDASLLKAFAEGKD 743

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH+  AAEIF + +E+V+ + RR AK +NF +IYG+S F LA QL I R  A +YI  YF
Sbjct: 744 IHQATAAEIFNMPLEEVTSEQRRSAKAVNFGLIYGMSAFGLAKQLNISRGLAQEYINLYF 803

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  Y+E TK   +Q GYVET+ GRR++  +IN+    +R   ER AINAP+QG+A
Sbjct: 804 ARYPGVANYMESTKENAKQTGYVETLMGRRLYLPDINAKNGQLRQYAERTAINAPMQGTA 863

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ + + L+      KML+Q+HDELVFEV E ++  A + I   ME A    +
Sbjct: 864 ADIIKTAMVKMQQWLDQTPCDIKMLMQVHDELVFEVAEADMDQARKEIKTIMEAA----L 919

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V I    NW E +
Sbjct: 920 KLDVPLIVEIGDGLNWDEAH 939


>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 932

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/985 (37%), Positives = 556/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLLLVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D+ 
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWLADVEAGKWLDSK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P                       T +TS  S ++  T+                  
Sbjct: 301 KDRP-----------------------TGQTSSQSFVAADTAPTAE-------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K +  W+++L+     +F   TD +D      I ++ +     
Sbjct: 324 -VTAVLSQENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E++  LK+G N+K+DK +L 
Sbjct: 382 EAAYLPLAHDYLDAPPQLDRD---------WVLATLKPLLEDDKALKVGQNLKFDKSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI ++G   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E  G+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERAGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V  NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGANWDQAH 932


>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
 gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
          Length = 928

 Score = 1004 bits (2597), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 551/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +PV                           Q + ++D+  ++N+              
Sbjct: 301 GAKPVAK------------------------PQETLVTDEAPEVNA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++   ++ W+ +LE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TTISYDNYVTILDEDTLKAWITRLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D           +    + +L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYVPVAHDYLDAP---------EQISRERVLELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYDIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPQDHVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  K   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEKPRVRMIMQVHDELVFEVHKDDLDVVAKKIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
 gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
          Length = 934

 Score = 1004 bits (2596), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/985 (36%), Positives = 553/985 (56%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL         SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNAS-GEPTGAMYGVLNMLRSLLLQYH----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G++V I + DKD+ QLV+P   L +T+    +  E V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGYSVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVREKFGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYSNLDKIASLTFRGAKTLSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +    LI+   +  +L +     EF + +  +      +  
Sbjct: 241 DVAYLSYQLATIKTDVELEVSCGELIVSTPDIDQLHTLFARYEFKRWLVDLEGGKWLEGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P     +  +   I + T     T +                               
Sbjct: 301 KARPTGTGKSDNKASDIVVATPTAEVTAL------------------------------- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ +    W+++L+     +F   TD +D   +  I ++ +     
Sbjct: 330 -----LSQENYQTILDEETFLIWIERLKQAEVFAFDTETDGLDTLSANLIGLSFAVAPG- 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D                  +L+ LK   E+E  LK+G N+K+DK +L 
Sbjct: 384 EAAYLPVAHDYLDAPA---------QLDRSWVLTTLKPLLEDEQALKVGQNLKFDKSLLA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVL+S    HD+ S+++++L++     +EI    K+ +  ++I
Sbjct: 435 RYGIELRGIAFDTMLESYVLNSVAGRHDMDSLSERYLNHKTITFEEIAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + PKL   E LL V+++++ P++ ++S++E TG+ IDQ
Sbjct: 495 ALEQASPYAAEDADVTLQLHLAMWPKLQESEDLLRVFQQIEMPLLPILSRIERTGVLIDQ 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 555 SILATHSQELTIRLTELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K +LE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 615 NEEVLAELAL-DYPLPKVLLEYRGLAKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L   F 
Sbjct: 674 LSSRDPNLQNIPVRNEEGRRIRQAFIAPAGYCILAADYSQIELRIMAHLSQDKGLLAAFA 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 734 EGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 794 DLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A+Q I   ME+ 
Sbjct: 854 QGTAADIIKRAMIAVDAWLQQQAEPLVRVIMQVHDELVFEVHESVVESATQTICDLMEQ- 912

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV + V  NW + +
Sbjct: 913 ---SMQLDVPLKVEVGVGKNWDQAH 934


>gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654]
 gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654]
          Length = 932

 Score = 1003 bits (2594), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/977 (40%), Positives = 580/977 (59%), Gaps = 52/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS++I+RA++A P L+RK DGLP+ A++GFCNML + ++++      +H A
Sbjct: 5   KGCHLHLIDGSAYIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEDNTGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD  + TFRN++Y  YKANR ++PE L PQ+PL R AT AF I   E++G+EADDIIA
Sbjct: 65  VVFDKGSHTFRNDMYDQYKANRDEMPEDLRPQIPLTREATIAFNIACKEMEGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +  + G  VTI+S+DKDLMQLV     + D +K ++ID E VI+K+G+ PE++V +
Sbjct: 125 TLACMGREAGGQVTILSSDKDLMQLVGDGVEMLDPMKNKRIDREGVIEKFGVGPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRRE + +  E   L
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLETLLDRAEEIKQPKRRETLTQKREQIEL 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + PI   L+ L ++D +  +L+ FL  +EF  L  R+A     +   I   
Sbjct: 245 SKRLVQLDCETPIDFTLDDLEVQDPDPDKLMPFLAKMEFRTLTRRIADKLGVEPLAI--- 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                                       P+              
Sbjct: 302 ------------------------------------------PEPEAKDAPEGDAPDAPE 319

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ + Y  + + + + +W+  +   G  +    T +++   ++   I ++ +  +     
Sbjct: 320 IDPEKYEWVKDMEALDRWIALIRDHGYVAVDTETTSLNEMQAEFAGICLAVVPGEACYIP 379

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
               +     +              ++L+ LK   E+   LKI  N KYD  +  R+G++
Sbjct: 380 VGHKVGDGEGLFADDKLAEGQLSLDDVLAALKPVLEDPAILKIFQNAKYDTKIFSRHGLN 439

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY + SG  +H + ++++ +L +T    K +L + KS+I  DK+      
Sbjct: 440 VAPIDDTMLMSYAMFSGLHNHGMDTLSEHYLGHTPISIKTLLGTGKSAITFDKVKIEDAV 499

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A E+++V L+LW L +P+L  EK+  VYE L++P++ V++QME+ G+Q+D+D L ++S
Sbjct: 500 KYAAEDADVTLRLWQLFKPRLHREKVTTVYETLERPLVPVLAQMEMHGVQVDRDTLSRMS 559

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I++L+G+ FN+ SPKQLG+ILF KL    G K KTG + T A  LE 
Sbjct: 560 NAFAQKMAGLEAEIHELAGQSFNVGSPKQLGEILFDKLGLEGGKKGKTGAYATGADVLED 619

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT Y      TGRLAS +PN
Sbjct: 620 LAA-QHDLPARVLDWRQLSKLKSTYTDALQTHIDPDTGRVHTSYLQTGASTGRLASTDPN 678

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IR AF++P  K L+S DYSQIELRILAH+A I  + Q F +  DIH 
Sbjct: 679 LQNIPIRTEEGRRIREAFVAPEGKVLVSLDYSQIELRILAHVAGIESMKQAFRDGEDIHA 738

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+F V +++++P +RR AK INF +IYGIS F LA  LRI R EA  +I RYF ++
Sbjct: 739 ATASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIARGEAQGFIDRYFEKY 798

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI EY++ T  F +++G+V T+FGR+IH  EIN+ K        RAAINAPIQGSAADI
Sbjct: 799 PGIKEYMDDTVAFAKEHGHVATLFGRKIHTPEINA-KGPHAGFARRAAINAPIQGSAADI 857

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI +  ++    L  KMLLQ+HDEL+FEV E  +  A  +I   ME A  P + L 
Sbjct: 858 IRRAMIRMPDAI--SGLPVKMLLQVHDELIFEVEEGGVDKAVSVIRDVMEGAADPAVKLD 915

Query: 960 VPLKVNIKVSNNWQEEN 976
           +PL V+     NW E +
Sbjct: 916 IPLVVDAGQGANWAEAH 932


>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
          Length = 903

 Score = 1003 bits (2594), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/981 (37%), Positives = 545/981 (55%), Gaps = 83/981 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRAF+A P L+    G P  A+ G  NML KLL++   E    H
Sbjct: 1   MSKTPPLVLVDGSSYLYRAFHALPPLTNSR-GEPTGAVYGVANMLRKLLKDYAPE----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD    TFR+E+Y +YKANRP +P+ L  Q+  +    QA G+P + + G EADD+
Sbjct: 56  VVVVFDAKGKTFRDEMYAEYKANRPPMPDELAAQVEPLHQVVQAMGLPMLVVPGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT      + G  V I + DKD+ QLV P   L +T+ + K+D E V +K+G+ PE++V
Sbjct: 116 IATLAREGREHGLEVVISTGDKDMAQLVEPGVTLVNTMTDTKMDAEGVKEKFGVAPEQIV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD++DN+PG+  +G KTA   L+ YG+L+ I+ +A  IK  K  EN+       
Sbjct: 176 DYLALIGDTVDNVPGVDKVGPKTAVKWLEAYGSLDGIMEHAEEIKG-KVGENLRAALGHL 234

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+LV +R D+ + +  E L L + +   L +    LEF   +  +            
Sbjct: 235 PLSRELVTVRRDLELDVTPESLRLGEPDRETLRALFSRLEFRTWLKELE----------- 283

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                           S  +Q    + + TP +           
Sbjct: 284 --------------------------------SGEEQAQAASDDPTPGQPA--------- 302

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  I++ K +  W+++LET    +F   T ++D   ++ + ++ +    +   
Sbjct: 303 -----QAYETILDEKALAAWMKRLETAELFAFDTETTSLDYMQAQVVGVSFAVKTGE--- 354

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L+   +     +     E L  LK   E+    K+GH++KYD+ VL  +G
Sbjct: 355 -----AAYLPLAHDYAD--APQQLDRDETLKRLKPLLESARHKKLGHHLKYDRNVLLNHG 407

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I + G   D ML SYVL+S  S HD+ S+AQK+L Y     +E+       IP  ++   
Sbjct: 408 IELNGIEHDTMLESYVLNSTASRHDMDSLAQKYLDYRTTHYEEVAGKGAKQIPFSQVRIE 467

Query: 537 QVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +A E++++ L+L   L P+L   E    VY  ++ P++ V+S+ME TG+++D + L
Sbjct: 468 DATPYAAEDADITLRLHEHLWPQLSAAEGQCRVYREIEMPLVPVLSRMERTGVKVDAERL 527

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S E+++ +  +E   ++++G  FNL SPKQ+ +IL+ + K P   KT  GQ  T   
Sbjct: 528 FAQSHELAERMGQIEREAHEVAGGAFNLGSPKQIQEILYERQKLPVLRKTPKGQPSTAED 587

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LEQ+   D P+ K ILE R LSK+KSTY D LP  I+  T RVHT Y  A   TGRL+S
Sbjct: 588 VLEQLAL-DYPLPKLILEHRSLSKLKSTYTDKLPERIDPDTGRVHTSYHQAVASTGRLSS 646

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G++IR+AF++P  ++L++ADYSQIELRI+AH++    L + F    
Sbjct: 647 SDPNLQNIPIRTEEGRRIRQAFVAPSGRRLVAADYSQIELRIMAHLSGDAGLLRAFAEGQ 706

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+FGV +++VS + RR AK INF +IYG+S F LA QL I R +A DY+ RY
Sbjct: 707 DIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIYGMSAFGLARQLGIERGDAQDYVDRY 766

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ +Y+E T+   R  GYVET+FGRR++  +IN+    IR   ER AINAP+QG+
Sbjct: 767 FARYPGVKDYMESTREKARDLGYVETLFGRRLYLPDINARNGQIRAQAERVAINAPMQGT 826

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI V + + + ++   M+LQ+HDELV EV E+ +    + +   M +A    
Sbjct: 827 AADIIKRAMIQVDQWIRESRIPAVMILQVHDELVLEVDEDAVDKVREELCVRMSQAA--- 883

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L+VPL V   V +NW + +
Sbjct: 884 -ELKVPLVVEAGVGDNWDDAH 903


>gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217]
 gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217]
          Length = 936

 Score = 1003 bits (2594), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/981 (40%), Positives = 588/981 (59%), Gaps = 52/981 (5%)

Query: 1   MQ--KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           MQ  K  HL L+DGSSFI+RA++A P L+RK DGLP+ A++GFCNML + ++ +      
Sbjct: 3   MQFGKGCHLHLIDGSSFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEGNNGPDAP 62

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AVIFD  + TFRN++YP+YKANR  +PE L PQ+PL R AT+AF I   EI+GFEAD
Sbjct: 63  THVAVIFDKGSHTFRNDLYPEYKANREAMPEDLRPQIPLTREATRAFNIACEEIEGFEAD 122

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           DIIAT    A   G  VTIIS+DKDLMQLV     + D +K   ID++ V +K+G+ P++
Sbjct: 123 DIIATLACQARDLGGRVTIISSDKDLMQLVGNGVEMLDAMKNRLIDVDGVREKFGVTPDR 182

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +V +QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRR+ ++E  +
Sbjct: 183 VVDVQALAGDSVDNVPGAPGIGIKTAALLINEFGSLEALLDRAGEIKQPKRRDTLIEKRD 242

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              +S++LV L  + P+   L+ L + D +   L+ FL  +EF  L  R+A     DA  
Sbjct: 243 QIEMSKRLVQLDCNTPLEFTLDDLEVRDPDPEVLLCFLAQMEFRTLSKRIADALGKDAPT 302

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           I                                            E  PQ+   E     
Sbjct: 303 I-------------------------------------------PEPKPQQAADEGQSVA 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I  ++Y ++ + K +  W+  + + G  +    T +++   +  + I+++    + 
Sbjct: 320 DWPAIEPETYERVSDQKSLDAWIAAIRSQGYVAVDTETTSLNEMQADLVGISLAIAPGRA 379

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                         +  S           + L+ LK   E+   LKIG N+KYD  +   
Sbjct: 380 CYIPLTHKDGAADDLFGSDKMAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFAA 439

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
            GI++   +D MLMSY L +G   H + ++++++L +T    K +L S K+++  D++  
Sbjct: 440 RGITVEPIDDTMLMSYALHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVTFDRVPV 499

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +  ++A E++++ L+LWL  +P+L   ++  VYE L++P++ V++QME  G+++D+  L
Sbjct: 500 DEAVKYAAEDADITLRLWLTFKPQLHRARVTTVYETLERPLVPVLAQMERYGVKVDRATL 559

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +S + ++ + +LE  I++L+G  FN+ SPKQLG+ILF ++    G K KTG + T A 
Sbjct: 560 RAMSGKFAQKMAALESEIHELAGRSFNVGSPKQLGEILFDEMGLSGGEKGKTGAYATGAD 619

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +   ++ +   +L+WRQLSK+KSTY D+L +HI+  T RVHT Y  A   TGRLAS
Sbjct: 620 VLEDL-ATEHELPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYVQAGANTGRLAS 678

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++++ G++IR AF++    +L+S DYSQIELRILAH+A+I  L Q F    
Sbjct: 679 TDPNLQNIPVRSEEGRRIREAFVAASGHRLVSLDYSQIELRILAHVAEIETLKQAFREGH 738

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPRSEA  +I RY
Sbjct: 739 DIHAMTASEMFNVPLDQMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGFIDRY 798

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPGI +Y++ T  F +++GYV+T+FGR+IH  EI S K        RAAINAPIQGS
Sbjct: 799 FERFPGIKDYMDATVAFAKEHGYVQTLFGRKIHTPEI-SAKGPRAGFARRAAINAPIQGS 857

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI RRAMI +  ++    L  KMLLQ+HDEL+FEV EE      +I    M+ A  P 
Sbjct: 858 AADIIRRAMIRMPDAI--EGLPCKMLLQVHDELIFEVAEEATDRLIEIARDVMQGAASPA 915

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           ++L VPL V+     NW E +
Sbjct: 916 VHLDVPLVVDAGQGVNWAEAH 936


>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
 gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
          Length = 932

 Score = 1003 bits (2594), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/985 (37%), Positives = 558/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + I  + L +   +  +L       EF + +  V      +  
Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELKVSPPDDDQLHQLFSRYEFKRWLADVEAGKWLEGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P     N                    TS+  + ++ T+ ++ +             
Sbjct: 301 KDRPTAQTNNR----------------AFVTSEPVAAAEVTAVLSQDN------------ 332

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++ K +  W+++L+     +F   TD +D   S  I ++ +     
Sbjct: 333 ----------YQTILDEKSLADWIERLKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L+ LK   E++  LK+G N+K+D+ +L 
Sbjct: 382 EAAYLPVAHDYLDAPAQLDRD---------WVLAQLKPLLEDDKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I++RG   D ML SYVL+S    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYDINLRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ V+S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKQVFQEIEMPLLPVLSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  I+  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMISPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  EI+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPEIHSRNATRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +  Q +   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQEPEPKVRVIMQVHDELVFEVHESVLESTEQKVRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV+I V +NW + +
Sbjct: 911 ---SMQLAVPLKVDIGVGDNWDQAH 932


>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
 gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
 gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
 gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
          Length = 928

 Score = 1003 bits (2594), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 546/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYGEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D  L SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTRLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE   ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELERKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLSDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 909 ----RLDVPLLVEVGSGENWDQAH 928


>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 932

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/985 (37%), Positives = 560/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  +  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFNHLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + I  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P     N                      + + +++ T+ ++ E             
Sbjct: 301 KDRPTAQASN----------------KAFVAPESAPVAEVTAVLSQEN------------ 332

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++ K +  W+++L+     +F   TD +D   S  I ++ +     
Sbjct: 333 ----------YQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E++  LK+G N+K+D+ +L 
Sbjct: 382 EAAYLPLAHDYLDAPAQLDRD---------WVLAQLKPLLEDDKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V  NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGYNWDQAH 932


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/985 (37%), Positives = 555/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISSLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELKVTAPDDDQLYQLFSRYEFKRWLADVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P     N                                 + +E +P       L  
Sbjct: 301 KDRPTAQSSNKV------------------------------FVAAESSPAVEVTAVL-- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 + ++Y  I++ K +  W+++L+     +F   TD +D   S  I  + +     
Sbjct: 329 ------SQENYQTILDEKSLSDWIERLKNAEVFAFDTETDGLDTLSSNLIGFSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      ++          +L+ LK   E+E  LK+G N+K+D+ +L 
Sbjct: 382 EAAYLPVAHDYLDAPTQLDRN---------WVLAQLKPLLEDEKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I +RG   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYDIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDQGLLTAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +EKV+   RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V +NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGDNWDQAH 932


>gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2]
 gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2]
          Length = 935

 Score = 1003 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/977 (41%), Positives = 597/977 (61%), Gaps = 49/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML++ ++++++    +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFRYVEDNKQGDAPTHAA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ A TFRN IYP YKANRP++PE L PQ PL R AT+AF I  IE +G+EADDIIA
Sbjct: 65  VIFDHSAKTFRNAIYPAYKANRPELPEDLRPQFPLTRQATRAFNIACIEAEGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  VTI+S+DKDLMQLV     + D +K  +I  E V +K+G+ P++++ +
Sbjct: 125 TLACRARAAGGTVTILSSDKDLMQLVGDGVEMLDPMKNRRIGPEEVFEKFGVAPDRVIDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL+GDS+DN+PG PGIG KTAALL+QEYG+LE +L  A  I Q KRR  + + AE  R+
Sbjct: 185 QALSGDSVDNVPGAPGIGMKTAALLIQEYGDLETLLARAGEISQPKRRAALQDNAELIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV L   +P+ + L+ L +       ++SFL A+EF  L  RVA +    A  +E  
Sbjct: 245 SRRLVALDCAMPLEVTLDSLEVHPPQPEAVLSFLNAMEFRSLTTRVAASLKVAAPPME-- 302

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                               +   +E T      E        P
Sbjct: 303 ------------------------------------AARGAEVTGAHDAPEAA---PSLP 323

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +  +Y  + +   +++W+  +   G  +    T ++D   ++ + I++           
Sbjct: 324 FDTAAYECVRDAAALERWIAAIRERGVVAVDTETTSLDEMRAELVGISLCVQAG-TACYI 382

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +  S   T       + L+ LK   E++  LKIG N+KYD  +L R GIS
Sbjct: 383 PLGHRQGGGDLFGSSALTEGQMPVAQALALLKPVLEDDAILKIGQNMKYDAKILARLGIS 442

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY + +G +SH + +++ ++L +     K +L S KS++  D++   Q  
Sbjct: 443 VAPIDDTMLMSYAMHAGLNSHGMDALSDQYLGHQPIAIKPLLGSGKSAVTFDRVPIDQAV 502

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+LW L +P+L    +  VYE L++P++ V++QME+ GIQ+D+D L ++S
Sbjct: 503 AYAAEDADITLRLWELFKPQLHRAHVTTVYETLERPLVPVLAQMEMAGIQVDRDTLSRMS 562

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I+D++GEKFN+ SPKQLG+ILF K+  P G K KTG + T A  LE 
Sbjct: 563 NAFAQKMAGLEAEIHDMAGEKFNVGSPKQLGEILFDKMSLPGGEKGKTGAYATGADVLED 622

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT YSL   +TGRLAS +PN
Sbjct: 623 L-ATEHELPGRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSLTGAVTGRLASTDPN 681

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++P  ++L+S DYSQIELRILAH+A I  L Q F    DIH 
Sbjct: 682 LQNIPVRSEEGRRIREAFVAPKGRRLVSLDYSQIELRILAHVADIPALKQAFREGQDIHA 741

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +++++P +RR AK INF +IYGIS F LA  LRIPRS A  +I RYF RF
Sbjct: 742 MTASEMFNVPLDQMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRSAAQGFIDRYFERF 801

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y++ T  F + NG+V+T+FGR+IH  EIN+         +RAAINAPIQG+AAD+
Sbjct: 802 PGIKGYMDDTVAFAKANGFVQTLFGRKIHTPEINAR-GPGAGFAKRAAINAPIQGTAADV 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAM+ +  ++    +  KMLLQ+HDEL+FEV E+ + T   I    ME AC P ++L 
Sbjct: 861 IRRAMVRMPAAI--AGIDAKMLLQVHDELLFEVAEDAVDTLIPIAREVMETACDPAVHLS 918

Query: 960 VPLKVNIKVSNNWQEEN 976
           V L V      NW E +
Sbjct: 919 VRLTVEAGHGANWAEAH 935


>gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 932

 Score = 1003 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/985 (37%), Positives = 559/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +    V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPLEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + I  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P     N                         + +   S   +E T           
Sbjct: 301 KDRPTAQASN------------------------KAFAAPESAPVAEVTA---------- 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K +  W+++L+     +F   TD +D   S  I ++ +     
Sbjct: 327 ----VLSQENYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E++  LK+G N+K+D+ +L 
Sbjct: 382 EAAYLPLAHDYLDAPAQLDRD---------WVLAQLKPLLEDDKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V  NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGYNWDQAH 932


>gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14]
 gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14]
          Length = 1014

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/991 (44%), Positives = 651/991 (65%), Gaps = 24/991 (2%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            MQ   H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++  K+   +H
Sbjct: 33   MQ-GKHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPKDDKPTH 91

Query: 61   FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             A+IFD   VTFRN++YP YKA+RP  P+ L+PQ  L+R A +AF +P IE  GFEADD+
Sbjct: 92   LAIIFDKSEVTFRNKLYPAYKAHRPPAPDDLIPQFALIREAVKAFDLPCIEQGGFEADDL 151

Query: 121  IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
            IATY   A + G   TI+S+DKDLMQLV+    ++DT+K+ ++ I  VI+K+G+PPEK+V
Sbjct: 152  IATYVRQACERGATATIVSSDKDLMQLVTDCVTMFDTMKDRRLGIAEVIEKFGVPPEKVV 211

Query: 181  CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  AS IKQ KRRE ++E AE A
Sbjct: 212  EVQALAGDSVDNVPGVPGIGVKTAAQLITEYGDLETLLAQASEIKQPKRREALIENAEKA 271

Query: 241  RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            R+SR+LV+L   V + +PL+ L +++ +  +LI+FLKA+EFT L  RVA   + +AA IE
Sbjct: 272  RISRQLVLLDDHVALDVPLDDLAVQEPDARKLIAFLKAMEFTTLTKRVADYSEVNAAEIE 331

Query: 301  PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ----TSKINSEQTPQKLFLERLQ 356
            P   + +   +       E        +   +  +       +   + +TPQ L   RL+
Sbjct: 332  PDRKNASGASSTAAKASAEAVTSDLFGSDGVAKATSAGRTRATSDTAIKTPQALAAARLE 391

Query: 357  KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             + + P++   Y  I     +Q W+ ++   GS   + +  T+D   ++   IA++    
Sbjct: 392  AVRKLPVDRTQYETIRTLDRLQHWIARIANHGSFVVEALAPTIDPMQAELSGIALALAPN 451

Query: 417  KDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIGHN 468
                       ++ L+   + DS G             ++ L  LK   E+   LK+G N
Sbjct: 452  A--------ACYVPLNHKQAGDSAGLFAAGLAPDQIAIRDALDLLKPLLESGGHLKVGFN 503

Query: 469  IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRK 525
            +K+  ++L ++GI M+  +D+ L+SY LD+GR +HD+ ++AQ+WL +      E++ S +
Sbjct: 504  VKFTAVLLAQHGIVMQNNDDVELISYALDAGRGAHDLEALAQRWLDHTALNYGELIGSGR 563

Query: 526  SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            + +  D+++  +   +A E + + L+LW +L+P+L+ E++  VYE L++PMI  +++ME 
Sbjct: 564  NKLAFDQVTIDRATTYAAEYAALTLRLWQVLKPRLVAERMNSVYETLERPMIATLARMER 623

Query: 586  TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
             GI ID+ +L ++S E ++    LE  I  L+GE  N+ SPKQ+G+I+F K+  P G+KT
Sbjct: 624  RGITIDRQVLSRLSGEFAQTAARLEAEIQKLAGEPINVGSPKQIGEIMFGKMGLPGGSKT 683

Query: 646  KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            KTG W T+AQ L+ +    +   + IL+WRQ+SK+KSTY D+LP ++N +T RVHT Y+L
Sbjct: 684  KTGAWSTSAQILDDLAEQGHDFPRKILDWRQVSKLKSTYTDALPEYVNPQTSRVHTTYAL 743

Query: 706  ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
            A+T TGRL+S EPNLQNIP++ + G+KIRRAFI+ P  KL+SADYSQIELR+LA IA I 
Sbjct: 744  AATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIP 803

Query: 766  PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
             L Q F + LDIH M A+E+FGV +  +  ++RR AK INF IIYGIS F LA QL IPR
Sbjct: 804  VLKQAFRDGLDIHAMTASEMFGVPVTGMPGEIRRRAKAINFGIIYGISAFGLANQLGIPR 863

Query: 826  SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             EA  YIK+YF RFPGI  Y++ T++F R++GYVET+FGR+ HY +I SP  S R  NER
Sbjct: 864  EEAGTYIKKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCHYPDIKSPNPSHRAFNER 923

Query: 886  AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AAINA +QG+AADI RRAM+ +  +L   KL+ +MLLQ+HDEL+FEVP++E+     ++ 
Sbjct: 924  AAINARLQGTAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDDEVAATLPVVQ 983

Query: 946  HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            H M+ A  P + L VPL+V+ + ++NW E +
Sbjct: 984  HVMQDAPFPAMLLSVPLQVDARAADNWDEAH 1014


>gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
 gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
          Length = 937

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/977 (42%), Positives = 588/977 (60%), Gaps = 47/977 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++     +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 65  VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
             +  A   G +VTI+S+DKDLMQLV     + D +K ++I  + V +K+G+ PE++V +
Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L  A  IKQ KRR  I E AE  R+
Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+T  LE L +       L+ FL  +EF  L  RVA +   +       
Sbjct: 245 SKRLVALDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASLKVE------- 297

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +   + + +E  P+ +     Q  +  P
Sbjct: 298 -----------------------------PPPAPTAAVLRNEGVPEIVE----QVEAALP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++ SY  + + + +  W+ ++  +G  +    T ++D   ++ + I++   +       
Sbjct: 325 FDSASYACVRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCV-EAGAACYI 383

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +  + +           LS LK   E+E  LKIG N+KYD  +L R+GI 
Sbjct: 384 PLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARHGIR 443

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY + +GR  H +  +   +L +     K +L S KS I  D++   Q  
Sbjct: 444 VAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQAV 503

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++V  +LW L +P+L   ++  VYE L++P++ V+++ME+ G+Q+D+D L ++S
Sbjct: 504 CYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMS 563

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I+ L+G  FN+ SPKQLG+ILF K+  P G K K G W T A  LE 
Sbjct: 564 NAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLED 623

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT YS+A   TGRLAS +PN
Sbjct: 624 LAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGRLASTDPN 683

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I  L Q F    DIH 
Sbjct: 684 LQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHA 743

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +E + P +RR AK INF +IYGIS F LA  LRIPR++A  +I RYF RF
Sbjct: 744 MTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFIDRYFERF 803

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++T +F + NG+VET+FGRRI+  EIN+ K        RAAINAPIQG+AAD+
Sbjct: 804 PGIRGYMDETISFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPIQGTAADV 862

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI + K++    +   MLLQ+HDEL+FEV EE      + +   ME A  P + L 
Sbjct: 863 IRRAMIRMPKAIR--GMPATMLLQVHDELLFEVEEEAADALIERVREVMEGAADPAVKLT 920

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V      NW   +
Sbjct: 921 VPLTVEAGRGLNWAAAH 937


>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
 gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
          Length = 932

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/985 (37%), Positives = 561/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+EI+ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEIFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFNNLDKIATLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      +  
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDEQLHQLFSRYEFKRWLADVEAGKWLEGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P     N                  I  ++ ++ ++ T+ ++ +             
Sbjct: 301 KERPTAQANNKY----------------IVATEPAAAAEVTAVLSQDN------------ 332

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++ + +  W+++L+     +F   TD +D   S  I ++ +    +
Sbjct: 333 ----------YQTILDEQTLADWIERLKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGE 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+ H   D+       + +L  LK   E+E  LK+G N+K+D+ +L 
Sbjct: 383 --------AAYLPLA-HDYLDAPA-QLDRQWVLDTLKPLLEDEKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+GE FNL+SPKQL  IL+ K + P   KT  G   T
Sbjct: 553 NILAAHSKELAIRLDELEKQAHELAGEPFNLASPKQLQVILYEKQQLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K I+E+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVIIEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  +INS  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDINSRNANRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+       ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQESAPLVRVIMQVHDELVFEVHETVLESAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V +NW++ +
Sbjct: 911 ---SMQLAVPLKVDVGVGDNWEQAH 932


>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 932

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/985 (37%), Positives = 560/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + I  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P     N                         + +   S   +E T           
Sbjct: 301 KDRPTAQASN------------------------KAFAAPESAPVAEVTA---------- 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K +  W+++L+     +F   TD +D   S  I ++ +     
Sbjct: 327 ----VLSQENYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E++  LK+G N+K+D+ +L 
Sbjct: 382 EAAYLPLAHDYLDAPAQLDRD---------WVLAQLKPLLEDDKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEIPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILVAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V  NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGYNWDQAH 932


>gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
 gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
          Length = 937

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/977 (42%), Positives = 587/977 (60%), Gaps = 47/977 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++     +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 65  VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
             +  A   G +VTI+S+DKDLMQLV     + D +K ++I  + V +K+G+ PE++V +
Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L  A  IKQ KRR  I E AE  R+
Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+T  LE L +       L+ FL  +EF  L  RVA +   +       
Sbjct: 245 SKRLVALDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASLKVE------- 297

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +   + + +E  P+ +     Q  +  P
Sbjct: 298 -----------------------------PPPAPTAAVLRNEGVPEIVE----QVEAALP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++ SY  I + + +  W+ ++  +G  +    T ++D   ++ + I++   +       
Sbjct: 325 FDSASYACIRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCV-EAGAACYI 383

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +  + +           LS LK   E+E  LKIG N+KYD  +L R+GI 
Sbjct: 384 PLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARHGIR 443

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY + +GR  H +  +   +L +     K +L S KS I  D++   Q  
Sbjct: 444 VAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQAV 503

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++V  +LW L +P+L   ++  VYE L++P++ V+++ME+ G+Q+D+D L ++S
Sbjct: 504 CYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMS 563

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I+ L+G  FN+ SPKQLG+ILF K+  P G K K G W T A  LE 
Sbjct: 564 NAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLED 623

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT YS+A   TGRLAS +PN
Sbjct: 624 LAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGRLASTDPN 683

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I  L Q F    DIH 
Sbjct: 684 LQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHA 743

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +E + P +RR AK INF +IYGIS F LA  LRIPR++A  +I RYF RF
Sbjct: 744 MTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFIDRYFERF 803

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++T  F + NG+VET+FGRRI+  EIN+ K        RAAINAPIQG+AAD+
Sbjct: 804 PGIRGYMDETIAFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPIQGTAADV 862

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI + K++    +   MLLQ+HDEL+FEV EE      + +   ME A  P + L 
Sbjct: 863 IRRAMIRMPKAIR--GMPATMLLQVHDELLFEVEEEAADALIERVREVMEGAADPAVKLT 920

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V      NW   +
Sbjct: 921 VPLTVEAGRGLNWAAAH 937


>gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
 gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
          Length = 937

 Score = 1002 bits (2590), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/977 (42%), Positives = 587/977 (60%), Gaps = 47/977 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++     +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 65  VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
             +  A   G +VTI+S+DKDLMQLV     + D +K ++I  + V +K+G+ PE++V +
Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L  A  IKQ KRR  I E AE  R+
Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+T  LE L +       L+ FL  +EF  L  RVA +   +       
Sbjct: 245 SKRLVALDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASLKVE------- 297

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +   + + +E  P+ +     Q  +  P
Sbjct: 298 -----------------------------PPPAPTAAVLRNEGVPEIVE----QVEAALP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++ SY  + + + +  W+ ++  +G  +    T ++D   ++ + I++   +       
Sbjct: 325 FDSASYACVRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCV-EAGAACYI 383

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +  + +           LS LK   E+E  LKIG N+KYD  +L R+GI 
Sbjct: 384 PLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARHGIR 443

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY + +GR  H +  +   +L +     K +L S KS I  D++   Q  
Sbjct: 444 VAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQAV 503

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++V  +LW L +P+L   ++  VYE L++P++ V+++ME+ G+Q+D+D L ++S
Sbjct: 504 CYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMS 563

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I+ L+G  FN+ SPKQLG+ILF K+  P G K K G W T A  LE 
Sbjct: 564 NAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLED 623

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT YS+A   TGRLAS +PN
Sbjct: 624 LAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGRLASTDPN 683

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I  L Q F    DIH 
Sbjct: 684 LQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHA 743

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +E + P +RR AK INF +IYGIS F LA  LRIPR++A  +I RYF RF
Sbjct: 744 MTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFIDRYFERF 803

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++T  F + NG+VET+FGRRI+  EIN+ K        RAAINAPIQG+AAD+
Sbjct: 804 PGIRGYMDETIAFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPIQGTAADV 862

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI + K++    +   MLLQ+HDEL+FEV EE      + +   ME A  P + L 
Sbjct: 863 IRRAMIRMPKAIR--GMPATMLLQVHDELLFEVEEEAADALIERVREVMEGAADPAVKLT 920

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V      NW   +
Sbjct: 921 VPLTVEAGRGLNWAAAH 937


>gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
 gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
          Length = 937

 Score = 1001 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/977 (42%), Positives = 587/977 (60%), Gaps = 47/977 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++     +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 65  VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
             +  A   G +VTI+S+DKDLMQLV     + D +K ++I  + V +K+G+ PE++V +
Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L  A  IKQ KRR  I E AE  R+
Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D P+T  LE L +       L+ FL  +EF  L  RVA +   +       
Sbjct: 245 SKRLVALDCDTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASLKVE------- 297

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +   + + +E  P+ +     Q  +  P
Sbjct: 298 -----------------------------PPPAPTAAVLRNEGVPEIVE----QVEAALP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++ SY  + + + +  W+ ++  +G  +    T ++D   ++ + I++   +       
Sbjct: 325 FDSASYACVRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCV-EAGAACYI 383

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +  + +           LS LK   E+E  LKIG N+KYD  +L R+GI 
Sbjct: 384 PLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARHGIR 443

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY + +GR  H +  +   +L +     K +L S KS I  D++   Q  
Sbjct: 444 VAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQAV 503

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++V  +LW L +P+L   ++  VYE L++P++ V+++ME+ G+Q+D+D L ++S
Sbjct: 504 CYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMS 563

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I+ L+G  FN+ SPKQLG+ILF K+  P G K K G W T A  LE 
Sbjct: 564 NAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLED 623

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +L+WRQLSK+KSTY D+L  HI+  T RVHT YS+A   TGRLAS +PN
Sbjct: 624 LAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGRLASTDPN 683

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I  L Q F    DIH 
Sbjct: 684 LQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHA 743

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +E + P +RR AK INF +IYGIS F LA  LRIPR++A  +I RYF RF
Sbjct: 744 MTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFIDRYFERF 803

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++T  F + NG+VET+FGRRI+  EIN+ K        RAAINAPIQG+AAD+
Sbjct: 804 PGIRGYMDETIAFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPIQGTAADV 862

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI + K++    +   MLLQ+HDEL+FEV E+      + +   ME A  P + L 
Sbjct: 863 IRRAMIRMPKAIR--GMPATMLLQVHDELLFEVEEKAADALIERVREVMEGAADPAVKLT 920

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V      NW   +
Sbjct: 921 VPLTVEAGRGLNWAAAH 937


>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
 gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
          Length = 932

 Score = 1001 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/985 (37%), Positives = 557/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  +  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSHLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + I  + L +   +  +L+      EF + +  V      D  
Sbjct: 241 DVAYLSYQLATIKTDVELDITCDQLTVSSPDNEQLLQLFSRYEFKRWLVDVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P     N                               S + +E  P          
Sbjct: 301 KERPTGQTSNK------------------------------SFVAAESAPA--------V 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K + +W+++L+     +F   TD +D   S  I ++ +    +
Sbjct: 323 EVTAVLSQENYHTILDEKSLMEWIERLKKAEVFAFDTETDGLDTLSSNLIGMSFAVAPGE 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+ H   D+         +L+ LK   ENE  LK+G N+K+D+ +L 
Sbjct: 383 --------AAYLPLA-HDYLDAPA-QLDRNWVLATLKPLLENEKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG  EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGGLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIRDLMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V  NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGYNWDQAH 932


>gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937]
 gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937]
          Length = 944

 Score = 1001 bits (2588), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/991 (36%), Positives = 555/991 (56%), Gaps = 70/991 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LLQ        SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGA-GEPTGAMYGVLNMLRSLLQQYH----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLSVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V  K+GIPP  ++   
Sbjct: 121 LAQQAERAGKPVLISTGDKDMAQLVTPNITLINTMNNTILGPDEVCAKYGIPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  +  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYADLDKIASLTFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L + + +   L       EF + +            
Sbjct: 241 ELAYLSYQLATIKTDVELELGCEQLTVNEPDVAELHELFTRYEFKRWL------------ 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                +++    ++  + S  +    K   E TP++        
Sbjct: 289 --------------------ADVEDGKWLQGGRKSQPAVPFVKATVEATPKE-------- 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ D Y  I++ K +  W+++++T    SF   TD +D   +  + ++++     
Sbjct: 321 -AASVLSQDGYVTILDEKVLLDWLERIKTAALFSFDTETDGLDTLTANLVGVSLAIKPG- 378

Query: 418 DDTSFKVETIFIDL-------SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           +     +  I   +       S  +             +L+ LK   E++   KIG N+K
Sbjct: 379 EAAYLPLGHITSRVYSSNIYSSTVSPATRMSTQLDRDRVLALLKPLLEDDGIRKIGQNLK 438

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKS 526
           +DK V+ RYGI +RG   D ML SYVLDS    HD+ S+++++L +     +EI    K+
Sbjct: 439 FDKGVMARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAGKGKN 498

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I  +Q   +A E+++V L+L   L  KL   ++L  V++ +D P++ V+S++E 
Sbjct: 499 QLTFDQIPLAQASVYAAEDADVTLRLHETLWAKLEPQQELRKVFQNIDMPLVPVLSRIER 558

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG+ ID  +L + S E+++ L  LE   ++L+GE FNLSSPKQLG IL+ KL+ P   KT
Sbjct: 559 TGVLIDTTILAEHSRELTQRLAELEVQAHELAGEAFNLSSPKQLGAILYEKLQLPVIKKT 618

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             G   T  + L ++   D P+ K ILE R L+K+KSTY D LP  IN  T+RVHT Y  
Sbjct: 619 PKGAPSTNEEVLAELAL-DYPLPKLILEHRGLAKLKSTYTDKLPQMINPLTRRVHTSYHQ 677

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A T TGRL+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++  
Sbjct: 678 AVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRILAADYSQIELRIMAHLSRDA 737

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F + LDIHR  AAE+FG+ +++V+ + RR AK INF +IYG+S F L+ QL IPR
Sbjct: 738 GLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAFGLSRQLAIPR 797

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           SEA  Y+  YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S   + R   ER
Sbjct: 798 SEAQKYMNLYFERYPGVQEYMERTRQQAVDQGYVSTLDGRRLYLPDIHSRNVNSRKAAER 857

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QG+AADI ++AMI++   L   K    ML+Q+HDELVFEV    +  AS  I 
Sbjct: 858 AAINAPMQGTAADIIKKAMIAIDAWLRQEKPLVTMLMQVHDELVFEVHHSVLDEASAKIR 917

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           + ME        L VPL+V+I   +NW + +
Sbjct: 918 NLMEGCM----QLDVPLQVDIGTGSNWDQAH 944


>gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
 gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
          Length = 1023

 Score = 1000 bits (2586), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/979 (44%), Positives = 638/979 (65%), Gaps = 7/979 (0%)

Query: 5    NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++   ++  +H A++
Sbjct: 45   DHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPADNRPTHLAIV 104

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD   VTFRN+IYP+YKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IATY
Sbjct: 105  FDKSEVTFRNKIYPEYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQGGFEADDLIATY 164

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               A   G   TI+S+DKDLMQLV+    +YDT+K+ +I I  VI+K+G+PPEK+V +QA
Sbjct: 165  AREASDRGATTTIVSSDKDLMQLVNDRITMYDTMKDRRIGIPEVIEKFGVPPEKVVEVQA 224

Query: 185  LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            L GDS DN+PG+PGIG KTAA L+ +YG+LE +L  A+ IKQ KRRE ++E AE AR+SR
Sbjct: 225  LAGDSTDNVPGVPGIGIKTAAQLIVDYGDLEQLLFRATEIKQPKRREALIENAEKARISR 284

Query: 245  KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            KLV+L   V + +PL+ L + + +  +LI+FLKA+EF+ L  RVA     D AN++  V 
Sbjct: 285  KLVLLDDKVELEVPLDDLAVHEPDARKLIAFLKAMEFSTLTRRVADYSQIDPANVDADVA 344

Query: 305  DINTTENKGIAIET---EIDRDTTIKTSQFSSLSDQTSKINS-EQTPQKLFLERLQKLSQ 360
            + +       A  T       D     +  ++  D+  K  S +  P  L   R + L +
Sbjct: 345  NSSEARGGDSAARTTSSATSGDLFAAPAVTATGGDKGGKSASIKGAPISLAAAREEALRK 404

Query: 361  YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             P++   Y  I    ++  ++ ++   G  + +I  +++D   +    +A+S        
Sbjct: 405  LPVDRGKYQAIKTLAELNAFIARIHDAGHVAIEIRANSIDPMQADLCGVALSLAPNDACY 464

Query: 421  SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                       +               + +  L+   E+   LKIG ++K+  ++L ++G
Sbjct: 465  VPLAHKQSGGGAGLFDGGLAPDQVKHADAIDALRPVLESSGILKIGFDVKFTAVMLAQHG 524

Query: 481  ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537
            I++R  +D  L+SYVLD+GR SH + S+A++W  +      E+L S K  I  D++   +
Sbjct: 525  ITLRNTDDAQLISYVLDAGRGSHGLESLAERWFGHAMLKEGELLGSGKGKITFDQVPIDK 584

Query: 538  VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                + E +++ L++W +L+P+L+ E +  VYE L++P++ V+++ME  GI ID+ +L +
Sbjct: 585  AAPLSAEGADMALRVWRVLKPRLVAEHMTTVYETLERPLVAVLARMERRGISIDRQVLSR 644

Query: 598  VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            +S + ++    +E  I +++GE  N+ SPKQ+GDILF K+  P G KTKTG W TTAQ L
Sbjct: 645  LSGDFAQTAARVEAEIQEIAGEPVNVGSPKQIGDILFGKMSLPGGTKTKTGAWSTTAQVL 704

Query: 658  EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +++    + + K ILEWRQ+SK+KSTY D+LP ++N +T RVHT Y+LA+T TGRL+S E
Sbjct: 705  DELAEQGHDLPKKILEWRQVSKLKSTYTDALPEYVNPQTHRVHTTYALAATTTGRLSSNE 764

Query: 718  PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
            PNLQNIP++T+ G+KIRRAFI+ P  KL+SADYSQIELR+LA IA I  L Q F + LDI
Sbjct: 765  PNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDI 824

Query: 778  HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
            H M A+E+FGV I+ +  ++RR AK INF IIYGIS F LA QL I R EA+ YIK+YF 
Sbjct: 825  HAMTASEMFGVPIKGMPSEIRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKKYFE 884

Query: 838  RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            RFPGI  Y+++T++F RQ+GYV T+FGR+ HY +I +  +S+R  NERAAINA +QG+AA
Sbjct: 885  RFPGIRAYMDETRDFCRQHGYVTTLFGRKCHYPDIKASNASVRAFNERAAINARLQGTAA 944

Query: 898  DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
            DI RRAM  V  +L + KL+ +MLLQ+HDEL+FEVP+ E+     ++ H M+ A  P + 
Sbjct: 945  DIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDAEVEATLPVVQHVMQDAPFPAVL 1004

Query: 958  LRVPLKVNIKVSNNWQEEN 976
            L VPL V+ + + NW E +
Sbjct: 1005 LSVPLHVDARAAKNWDEAH 1023


>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
 gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
          Length = 932

 Score = 1000 bits (2586), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/985 (37%), Positives = 556/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK   AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKADHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELKVSAPDDDQLHQLFSRYEFKRWLVDVEAGKWLDGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P       T N+  A+   ++                                    
Sbjct: 301 KDRPTA----QTSNRAFAVAEPVEAVEV-------------------------------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++ K +  W+++L+     +F   TD +D   S  I I+ +     
Sbjct: 325 --TAVLSQENYQTILDEKSLADWIERLKKAEVFAFDTETDGLDTLSSNLIGISFAVAPG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D          +L+ LK   E++  LK+G N+K+D+ +L 
Sbjct: 382 EAAYLPLAHDYLDSPAQLDRD---------WVLATLKPLLEDDKALKVGQNLKFDQSMLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 433 RYGIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ
Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T
Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 AGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLSIPRGEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  +I+S  ++ R   ER AINAP+
Sbjct: 792 DLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+ 
Sbjct: 852 QGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQ- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V +NW + +
Sbjct: 911 ---SMQLAVPLKVDVGVGDNWDQAH 932


>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
 gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
          Length = 926

 Score = 1000 bits (2585), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/988 (36%), Positives = 541/988 (54%), Gaps = 74/988 (7%)

Query: 1   MQKEN-HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML KL     K+   S
Sbjct: 1   MSNSSLPLLLVDGSSYLYRAFHAMPPLTTSS-GQPTGAVRGVVNMLRKL----AKDYPES 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             AVIFD    TFR++IY DYKANRP +P+ L  Q+  +    +A G+P I   G EADD
Sbjct: 56  PIAVIFDAKGKTFRDDIYSDYKANRPPMPDDLRAQIEPLHTIIRAMGLPLIIQDGVEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I TY   A ++G  V + + DKD+ QLVS    L +T+ E  +DI  V +K+GIPP  +
Sbjct: 116 VIGTYAQQATEKGIPVVVSTGDKDMAQLVSEHVTLVNTMTETVMDIAGVNEKFGIPPSLI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENI 233
           +   AL GD +DNIPG+PG+G KTA  LLQ  G++E+I  N  ++        K   + +
Sbjct: 176 IDFLALMGDKVDNIPGVPGVGEKTALALLQNLGSVEDIYANLDKVPTLEVRGAKSLAKKL 235

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            +  + A LS +L  ++ DV +   LE LI  D +   L++    LEF   +  ++    
Sbjct: 236 EDNRDKAFLSYELATIKLDVELEHSLEELIPVDPDNDALLALFTELEFKGWVTELSKGGG 295

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
             A    P                                                    
Sbjct: 296 TKAKKASPNAKQA------------------------------------------AEEAP 313

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    IN D+Y  I+    ++ WV +L      +F   T +++   +K + ++ + 
Sbjct: 314 AAAPEEAVEINRDNYETILTEASLEAWVDRLSKAELFAFDTETTSLNYMEAKVVGVSFAV 373

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              +          ++            +    +++L  LK   E+E+  K+G N+KYD 
Sbjct: 374 APGE--------AAYVPFGHDYL--GAPEQLSEEQVLGKLKPLLEDENVKKVGQNLKYDA 423

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIP 529
            VL  +GI+++G   D ML SYV++S  + HD+ ++A   L +T    +EI       + 
Sbjct: 424 SVLANHGIALQGIAFDTMLESYVVNSTANRHDMDTLALAHLGHTNISFEEIAGKGAKQLT 483

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I   Q   +A E++++ L+L   L P++   E +  ++E ++ P++ V+S++E TG 
Sbjct: 484 FNQIQLDQAAPYAAEDADITLRLHQALWPQVEAVEGIKSLFENVELPLVPVLSKVERTGA 543

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  +L Q SAE++ +L  ++   ++L+GE+FNL+SPKQLG ILF KL  P   KTKTG
Sbjct: 544 LIDATILGQQSAELAADLERIQREAWELAGEEFNLASPKQLGVILFEKLGIPVIKKTKTG 603

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
               TA+++ Q    D P+   +LE R L+K+KSTY D LP  IN  T RVHT Y+ A T
Sbjct: 604 APS-TAEEVLQELALDYPLPALLLEQRGLAKLKSTYTDKLPTMINPHTGRVHTSYNQAVT 662

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPIKT+ G+++R+AFI+P   ++++ADYSQIELRI+AH++    L 
Sbjct: 663 ATGRLSSTDPNLQNIPIKTEAGRRVRKAFIAPEGYRIVAADYSQIELRIMAHLSGDEGLT 722

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F   LD+H   AAE+FG ++E V+P+ RR AK INF +IYG+S F LA QL I R++A
Sbjct: 723 NAFNQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINFGLIYGMSAFGLARQLHIGRNDA 782

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF R+PG+  Y+E  + F +++GYVET+ GRR++  EIN+     R   ER AI
Sbjct: 783 QRYIDTYFDRYPGVARYMEDIRVFAKEHGYVETLMGRRLYLPEINASNGMRRQAAERTAI 842

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QGSAADI ++AMI V K L   K+  KM++Q+HDELV EV E++I   +  +   M
Sbjct: 843 NAPMQGSAADIIKKAMIDVDKWLSTLKVDAKMIMQVHDELVLEVAEDQIEPVTATLCDIM 902

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A    + L VPL V   V  NW E +
Sbjct: 903 SAA----LKLDVPLLVEAGVGMNWDEAH 926


>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
 gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
          Length = 957

 Score =  999 bits (2582), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/985 (37%), Positives = 544/985 (55%), Gaps = 71/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    +      AV
Sbjct: 32  ENPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDR----IAV 86

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I+G EADD+I T
Sbjct: 87  VFDAKGKTFRDDMYPEYKANRPPMPDELRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGT 146

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 147 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYL 206

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  +   I        K   + +++  
Sbjct: 207 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSKTMAKKLVDNK 266

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +         
Sbjct: 267 DNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKLYGQLAFKSWLNELL-------- 318

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E     +E     D   +TS  S  S   S+IN+              
Sbjct: 319 ------------EGGTGVVEA----DEKAQTSVRSGASPVESEINNAAA----------- 351

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I +      W+ KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 352 ----NIDRSQYQTIFDQATFDIWLDKLKASELFAFDTETDSLDYMVANLVGLSFAVAEG- 406

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L+ LK   E++   K+G N+KYD  VL 
Sbjct: 407 EAAYVPVAHDYLDAPEQLDRD---------WVLAQLKPLLEDDTKAKVGQNLKYDASVLA 457

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 458 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQI 517

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             ++   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 518 DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDD 577

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++G+ FN++SPKQL  ILF ++  P   KT +G    
Sbjct: 578 MKLSAQSQEIAVRLGELEQKAYEIAGQPFNMNSPKQLQTILFEQMGLPVIKKTPSGTPS- 636

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++ Q    D P+   I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 637 TAEEVLQELALDYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGR 696

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 697 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQ 756

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 757 QGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQTYM 816

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q+GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 817 DKYFERYPGVMQYMEDTRSNASQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPM 876

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  +T     +   ME A
Sbjct: 877 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESCLTEIESKVQQLMESA 936

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 937 A----QLNVPLVAEAGHGDNWDQAH 957


>gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM]
 gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM]
          Length = 933

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/977 (40%), Positives = 593/977 (60%), Gaps = 53/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + + +       +H A
Sbjct: 7   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYISDDHGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI+GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDLYGLYKANREAMPEDLRPQMPLTREATRAFNIACQEIEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  VTIIS+DKDLMQLV     + D +K  +ID+E V +K+G+ P+++V +
Sbjct: 127 TLACQARDLGGRVTIISSDKDLMQLVGGGVEMLDAMKNRRIDVEGVEEKFGVGPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++E+     L
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLETLLDRAEEIKQPKRRQTLIEHRAQIEL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L + D +   L+SFL  +EF  L  R+A             
Sbjct: 247 SKRLVQLDCNTPLDFGLDDLEVRDPDPETLLSFLSEMEFRTLSTRIA------------- 293

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                    K +A+E  +  D     S+  S +D  +                       
Sbjct: 294 ---------KALAVEAPVIPDVAPAASE-DSAADWPA----------------------- 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I  ++Y ++ +   +Q W+ ++   G  +    T +++   ++ + I+++    +     
Sbjct: 321 IAPEAYERVSDMAALQVWIDRILARGYVAIDTETTSLNEMQAELVGISLAVEPGQACYIP 380

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     +  S            +LS L+   E+   LKIG N+KYD  +    G++
Sbjct: 381 LGHREGASDDLFGSDALAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDAKIFAGLGLT 440

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY L+SG  +H + ++++++L++     K +L + KS++  DK+   +  
Sbjct: 441 IAPIDDTMLMSYALNSGIHNHGMDALSERYLAHNPIPIKTLLGTGKSAVTFDKVPIDEAV 500

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A E++++ L+LW + +P+L  +++  VYE L++P++ V+++ME  GI +D+D+L ++S
Sbjct: 501 KYAAEDADITLRLWHMFKPQLHQKQVTTVYETLERPLVPVLARMERHGILVDRDVLSRMS 560

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I++L+G  FN+ SPKQLG+ILF ++    G K KTG + T A  LE 
Sbjct: 561 NAFAQKMGGLEAEIHELAGRSFNVGSPKQLGEILFDEMALEGGKKGKTGAYATGADVLED 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ +   +L+WRQLSK+KSTY D+L +HI+  T RVHT Y      TGRLAS +PN
Sbjct: 621 L-ATEHELPARVLDWRQLSKLKSTYTDALQDHIDPNTGRVHTSYVQTGASTGRLASTDPN 679

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++   K+L+S DYSQIELRILAH+A I  L Q F + LDIH 
Sbjct: 680 LQNIPVRSEEGRRIREAFVADAGKRLVSLDYSQIELRILAHVAGIDALKQAFRDGLDIHA 739

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+FGV +++++  +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF RF
Sbjct: 740 MTASEMFGVPLDEMTSDVRRRAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFERF 799

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++T  F + +GYV+T+FGRRIH  EI + K       +RAAINAPIQG+AADI
Sbjct: 800 PGIRAYMDETVEFAKAHGYVQTLFGRRIHTPEI-AAKGPRAGFAKRAAINAPIQGTAADI 858

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI + +++ D  L  KMLLQ+HDEL+FE  E+ +          ME A  P ++L 
Sbjct: 859 IRRAMIRMPEAIAD--LPCKMLLQVHDELLFEAEEDAVDAVITAAREVMEGAADPAVHLD 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+     NW E +
Sbjct: 917 VPLTVDAGSGMNWAEAH 933


>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
 gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
          Length = 933

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/985 (37%), Positives = 540/985 (54%), Gaps = 69/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P +   G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V  K+GIPP  ++   
Sbjct: 121 LALEAEKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPALIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N   I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALYANLDNIATLNFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +    L +   +   L    K  EF + +  V      +  
Sbjct: 241 EVAYLSYKLATIKTDVELDLSCAELEVSPLDVDALQQLFKQYEFKRWLADVEAGIWLEGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V                                     K  S   P  +  +  + 
Sbjct: 301 KGSGV-------------------------------------KAVSASKPAGVVADTPKV 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            ++  ++ + Y  I++ K    W++KL+     +F   TD +D   +  I ++ +     
Sbjct: 324 AAEATLSQEGYVTILDEKTFADWLKKLKNAEVFAFDTETDGLDTLTANLIGLSFAVAPG- 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +           +L  LK   E+E  LK+G N+K+D  +L 
Sbjct: 383 EAAYLPVAHDYLDAPAQLDRAY---------VLETLKPLLEDEKALKVGQNLKFDMGLLA 433

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I++RG   D ML SYVLDS    HD+ S++ ++L +     +EI    K  +  ++I
Sbjct: 434 RYDITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFEEIAGKGKKQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L    +LL V+  ++ P++ V+S +E TG+ IDQ
Sbjct: 494 ALEQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNEIEMPLVPVLSHIERTGVLIDQ 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++K L  LE   ++L+ E FNL+S KQL  IL+ K K P   KT  G   T
Sbjct: 554 SILATHSIELTKRLAELEIQAHELAEEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+K+TY D LP  IN  + RVHT Y  A T TGR
Sbjct: 614 NEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPFSGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L + F 
Sbjct: 673 LSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFA 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FGV ++KV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 733 EGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  +++S     R   ERAAINAP+
Sbjct: 793 DLYFERYPGVLEYMERTRQQAAEQGYVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI V   L+   +   +M++Q+HDELVFE+ E  I  +SQ I   ME  
Sbjct: 853 QGTAADIIKRAMIEVDAWLQGQDEPLVRMIMQVHDELVFEIHESVIEASSQRIRELMEN- 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++ V  NW E +
Sbjct: 912 ---SMTLAVPLKVDVGVGANWDEAH 933


>gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2]
 gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2]
          Length = 928

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/984 (36%), Positives = 553/984 (56%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKIGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L +       L+   K  EF + +  V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVRQPAAEELLGLFKQYEFKRWVTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                 +     I  ++TP++        
Sbjct: 301 GTKP--------------------------------AAKLQETIVVDETPEE-------- 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   +++W+ KL+     +F   TD++D   +  + ++ +     
Sbjct: 321 -PATVLSYENYVTILDEATLEEWIAKLKKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     ++D           L  LK   E+E+  K+G N+KYD+ +L 
Sbjct: 380 -AAYVPVAHDYLDAPDQIARD---------RALELLKPLLEDENAHKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGITFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E +D P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E+++ L  LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEELTQRLNELEQKAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  INK+T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++ + S+ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKIHQLMEN-- 906

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
             +  + VPL V +    NW + +
Sbjct: 907 --ETQIDVPLLVEVGSGENWDQAH 928


>gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278]
 gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278]
          Length = 1034

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/980 (43%), Positives = 640/980 (65%), Gaps = 8/980 (0%)

Query: 5    NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++  +    +H A++
Sbjct: 55   DHVFLVDGSSYIFRAYHALPPLNRKSDGLNVNAVLGFCNMLWKLLRDMPETDRPTHLAIV 114

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD   VTFRN+IY DYKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IATY
Sbjct: 115  FDKSEVTFRNQIYADYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIATY 174

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              +A + G   TI+S+DKDLMQLV+    +YDT+K+ +I    VI+K+G+PPEK+V +QA
Sbjct: 175  ARLACERGATTTIVSSDKDLMQLVNDCVTMYDTMKDRRIGTAEVIEKFGVPPEKVVEVQA 234

Query: 185  LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            L GDS DN+PG+PGIG KTAA L+ +YG+LE++L  A+ IKQ KRRE ++E AE AR+SR
Sbjct: 235  LAGDSTDNVPGVPGIGIKTAAQLINDYGDLESLLTRAAEIKQPKRREALIENAEKARISR 294

Query: 245  KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EPVV 303
            +LV+L   V + +PL+ L + + +  +LI+FLKA+EF+ L  RVA     D A++     
Sbjct: 295  QLVLLDDKVALEVPLDDLAVHEPDPRKLIAFLKAMEFSTLTRRVAEYSQIDPADVTADAQ 354

Query: 304  LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN----SEQTPQKLFLERLQKLS 359
            L + ++        +      +  +   ++      +I+     + TP  L   R +   
Sbjct: 355  LKVGSSPAAAPTPSSPASGGGSAPSKPATAPRTGDPRIDKSAMGKGTPAGLAESRAEAAK 414

Query: 360  QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               I+ D Y  + +  +++ ++ +    G  +  +   ++D   +    ++++    +  
Sbjct: 415  SARIDRDKYQTLRSLPELKAFLARAHEFGRVTVDVKASSIDPMQANLCGLSLALAPGEAC 474

Query: 420  TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                      D                 E L+ LK   E+   LKIG+NIK+  ++L ++
Sbjct: 475  YIPLAHRQAGDGGGLFDAGLAPDQIKESEALAALKPVLESTGLLKIGYNIKFLAVLLAQH 534

Query: 480  GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
            GI+++  +DI+LMSY LD+GR SH + S+A+  L++   +  E++ S K+ +  ++++  
Sbjct: 535  GITLQNVDDILLMSYALDAGRGSHKLDSLAEHVLAHAIISEGELIGSGKNKLTFEQVAID 594

Query: 537  QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            +   HA E ++VI ++W +L+P+L  E++  VYE L++P++ V+++ME  GI ID+ +L 
Sbjct: 595  RATAHAAEAADVIHRVWRVLKPRLTAERMTAVYETLERPLVSVLARMERRGISIDRQVLS 654

Query: 597  QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            ++S + ++    +E  + +L+GE  N+ SPKQ+GDILF K+    G +TKTG W T+A  
Sbjct: 655  RLSGDFAQTAARVEAELQELAGEPINVGSPKQIGDILFGKMGLSGGTRTKTGAWSTSASI 714

Query: 657  LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            L+ +    N   + ILEWRQ+SK+KSTY D+LP ++N +T RVHT Y+LA+T TGRL+S 
Sbjct: 715  LDDLAEQGNDFARKILEWRQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATTTGRLSSN 774

Query: 717  EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            EPNLQNIP++T+ G+KIRRAFI+ P  KL+SADYSQIELR+LA IA I  L Q F++ LD
Sbjct: 775  EPNLQNIPVRTEDGRKIRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQAFKDGLD 834

Query: 777  IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            IH M A+E+FGV I+ +  ++RR AK INF IIYGIS F LA QL I R EA+ YIKRYF
Sbjct: 835  IHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKRYF 894

Query: 837  HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             RFPGI  Y+++T+ F R+NGYV T+FGR+ HY EI +  +S+R  NERAAINA +QG+A
Sbjct: 895  ERFPGIRAYMDETREFCRKNGYVVTLFGRKCHYPEIKASNASVRAFNERAAINARLQGTA 954

Query: 897  ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
            ADI RRAM  V ++L   KL+ +MLLQ+HDEL+FEVPE+E+     ++ H M+ A  P +
Sbjct: 955  ADIIRRAMTRVEEALAQKKLSAQMLLQVHDELIFEVPEDEVAATLPVVQHVMQDAPFPAV 1014

Query: 957  NLRVPLKVNIKVSNNWQEEN 976
             L VPL V+ + ++NW E +
Sbjct: 1015 LLSVPLHVDARAADNWDEAH 1034


>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
 gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
          Length = 928

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/985 (36%), Positives = 546/985 (55%), Gaps = 72/985 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H A
Sbjct: 5   QENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAA 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I 
Sbjct: 60  VVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVRAMGLPLLAVSGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++  
Sbjct: 120 TLAREAEKVGRPVLISTGDKDMAQLVTPGITLINTMTNTVLGPDEVVTKYGVPPELIIDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEY 236
            AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + + 
Sbjct: 180 LALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDVLYAQPEKIAELSFRGAKTMAAKLEQN 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS +L  ++TDV +    E L ++      L+   K  EF +    V +     A
Sbjct: 240 KEVAYLSYQLATIKTDVALEQSCEQLEVQPPAADTLVELFKKYEFKRWTTDVESGKWLQA 299

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +P    +                                             +E   
Sbjct: 300 KGGKPAAKPV-----------------------------------------AAPVVEEDA 318

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +     ++ + Y  +++ + ++ W++KL+     +F   TD++D   +  + ++ +    
Sbjct: 319 EEVVSALSAEHYVTVLDEETLKSWIEKLKKAPLFAFDTETDSLDNHSANMVGLSFACEPG 378

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  V   +I            +    +  L  LK   E+E  LK+G N+KYD+ +L
Sbjct: 379 V-AAYVPVAHDYIGAP---------EQISRERALELLKPLLEDEKALKVGQNLKYDRGIL 428

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
             YGI +RG   D ML SY LDS    HD+ S++++WL +     +EI    K+ +  ++
Sbjct: 429 ANYGIELRGIAWDTMLESYTLDSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLTFNQ 488

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I   Q   +A E+++V LQL L + PKL   E  L+V+  ++ P++ V+S++E  G++ID
Sbjct: 489 IDLEQAGRYAAEDADVTLQLHLKMWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVKID 548

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L++ S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   
Sbjct: 549 PQVLQKHSEEITLRLAELEQKAHDIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPS 608

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TG
Sbjct: 609 TSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATG 667

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L + F
Sbjct: 668 RLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLKAF 727

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAE+FG+ +E VS + RR AK INF +IYG+S F L+ QL IPR E+  Y
Sbjct: 728 AEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKY 787

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP
Sbjct: 788 MDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAAAERAAINAP 847

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI+V   L++ +   +M++Q+HDELVFEV ++ +   S+ I   ME +
Sbjct: 848 MQGTAADIIKRAMIAVDAWLQEEQPRVRMIMQVHDELVFEVHKDALDAVSKKIHELMESS 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL V +   +NW + +
Sbjct: 908 MA----LDVPLLVEVGSGDNWDQAH 928


>gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96]
 gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96]
          Length = 930

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/978 (36%), Positives = 548/978 (56%), Gaps = 71/978 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              L LVDGSSF++RA++A P L+   +G P NAI G  NML KL+ +   +    +  V
Sbjct: 19  RERLILVDGSSFLFRAYHAIPPLTNA-NGEPTNAIYGVSNMLRKLIADYHSD----YITV 73

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  TFRNE+Y  YKA+RP +P+ L  Q+  +    +A G+P I   G EADD++  
Sbjct: 74  VFDAPGKTFRNELYDQYKAHRPPMPDDLRVQIAPLHNLIRAMGLPLIIESGVEADDVLGV 133

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE++G+ V I + DKD+ QLV+    L +T+   ++DI+ VI K+G+ PE+++   
Sbjct: 134 LAQHAEQQGYDVIISTGDKDMAQLVTEHIILENTMSNTRMDIQGVIDKFGVRPEQIIDYL 193

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++DNIPG+P +G KTAA  L++Y  LEN++ +A +I   K  EN+    +   LS
Sbjct: 194 ALIGDTVDNIPGVPKVGPKTAAKWLEQYSTLENLIAHADKITG-KIGENLRASLDQLPLS 252

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           ++L  ++ D+ +   +E L  +  +   L   L  L F+  +  +  + +          
Sbjct: 253 KQLTTIKCDLDLPYNMEDLKQQPMDKAELRILLAELGFSSWLKSLDASTEL--------- 303

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                                  S  TP    +E  Q   +   
Sbjct: 304 ------------------------------------STGSSSTPALSPIEAAQTEDKPAK 327

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            + SY  ++  +    W+ +LE     +F   T ++D   ++ + ++ +    K      
Sbjct: 328 IDSSYETVLTEQHFDDWLARLEKAELFAFDTETTSLDYSKAQIVGVSFAVTPGK------ 381

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               ++ L+               EIL  L+   EN    K+G N+KYD  VL  +GI++
Sbjct: 382 --AAYVPLAHDYP--GVPDQLDRSEILEKLRPLLENPRKAKLGQNLKYDTHVLANHGIAL 437

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQ 539
           RG   D ML SYVL+S  + H++  +A+++L       +++       I   ++S  Q  
Sbjct: 438 RGIAHDTMLESYVLNSTATKHNMDDLAKEYLGVETIHYEDVAGKGAKQIGFQEVSIDQAA 497

Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ LQL  +L  KL    +LL +Y  ++ P+I V++++E  G+ ID  +L Q 
Sbjct: 498 PYAAEDADITLQLHQVLNAKLAQHPRLLELYSDMEVPLISVLARIENNGVLIDAAMLAQQ 557

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+S  ++SLE++ +DL+G+ FNL SPKQ+ DIL+ + K P   KT  GQ   T + + 
Sbjct: 558 SLELSSQIISLEQHAHDLAGQTFNLGSPKQIQDILYDQQKLPVLKKTPKGQPS-TEESVL 616

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D P+ K ILE+R LSK+KSTY D LP  I+ +T R+HT Y  A   TGRL+S +P
Sbjct: 617 QELALDYPLPKLILEYRSLSKLKSTYTDKLPQQIDGQTGRIHTSYHQAIAATGRLSSSDP 676

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G+KIR+AFI+P  KK+++ADYSQIELRI+AH++    L + F    D+H
Sbjct: 677 NLQNIPIRSEEGRKIRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLKAFSEEQDVH 736

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FGV  E+V+  +RR AK INF +IYG+S F LA QL + RS+A  YI  YF R
Sbjct: 737 RATAAEVFGVAPEQVTTDLRRSAKAINFGLIYGMSSFGLAQQLGLSRSQAQSYIDLYFAR 796

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+++ +   R+ GY+ET+FGRR++  EINS  ++ R   ER AINAP+QG+AAD
Sbjct: 797 YPGVKNYMDRIREQAREQGYIETLFGRRLYLPEINSRNAARRQYAERTAINAPMQGTAAD 856

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAMI+  + L   +   KM++Q+HDELVFE+ EE +   +  I   M  A     +L
Sbjct: 857 IIKRAMIAADQWLYKEQPDAKMIMQVHDELVFEIAEEHVDDCAAKIRSIMCAAA----DL 912

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V+I + NNW E +
Sbjct: 913 DVPLIVDIGIGNNWDEAH 930


>gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895]
 gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895]
          Length = 928

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/984 (36%), Positives = 549/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELSCDQLEVQQPAAEELLGLFKKYEFKRWTTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQESIVIDETPD 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +    ++ D+Y  I++ + ++ W++ L+     +F   TD++D   +  + ++ +     
Sbjct: 320 VPATALSYDNYVTILDEETLESWIETLKKAPVFAFDTETDSLDNHAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRERALELLKPLLEDEKARKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQYKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    + SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPQDYVIASADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLESVTAEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKERGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V K L+D +   +M++Q+HDELVFEV ++++   S+ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDKWLQDEQPRVRMIMQVHDELVFEVHKDDLDVVSKKIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
 gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
          Length = 928

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 544/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +  E L ++      L+   +  EF +    V       A 
Sbjct: 241 EVAYLSYKLATIKTDVELELTCEQLEVKQPIADELLDLFRKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + L ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETLVIDESPD 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ ++Y  I++   ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 320 EATAALSYENYVTILDEATLKAWIAKLEKAPVFAFDTETDSLDNITANLVGLSFAVEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     ++D           L  LK   E+E   K+G N+KYD+ +L 
Sbjct: 380 -AAYVPVAHDYLDAPDQIARD---------RALELLKPLLEDEKVSKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G+ ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEQKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIPPKDHVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   LE  +   +M++Q+HDELVFEV ++++   S+ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDGWLESEQPRVRMIMQVHDELVFEVHKDDLDVVSKKIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 931

 Score =  997 bits (2578), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/985 (36%), Positives = 542/985 (55%), Gaps = 71/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    +      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  +   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +         
Sbjct: 241 DNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKLYGQLAFKSWLNELL-------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E     +E +    T++++                       +E    
Sbjct: 293 ------------EGGTGVVEADEKAQTSVRSGA-------------------SPVESEIN 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+   Y  I +      W+ KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 322 NAAANIDRSQYQTIFDQATFDIWLDKLKASELFAFDTETDSLDYMVANLVGLSFAVAEG- 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D           +    + +L+ LK   E++   K+G N+KYD  VL 
Sbjct: 381 EAAYVPVAHDYLDAP---------EQLDREWVLAQLKPLLEDDTKAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 432 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             ++   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 492 DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++G+ FN++SPKQL  ILF ++  P   KT +G    
Sbjct: 552 MKLSAQSQEIAVRLGELEQKAYEIAGQPFNMNSPKQLQTILFEQMGLPVIKKTPSGTPS- 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++ Q    D P+   I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 TAEEVLQELALDYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQ 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 QGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q+GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 791 DKYFERYPGVMQYMEDTRSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  +T     +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESCLTEIESKVQQLMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 911 A----QLNVPLVAEAGHGDNWDQAH 931


>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
 gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
          Length = 931

 Score =  997 bits (2578), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 542/985 (55%), Gaps = 71/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    +      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  +   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +         
Sbjct: 241 DNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKLYGQLAFKSWLNELL-------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E     +E +    T++++                       +E    
Sbjct: 293 ------------EGGTGVVEADEKAQTSVRSGA-------------------SPVESEIN 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+   Y  I +      W+ KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 322 NAAANIDRSQYQTIFDQATFDIWLDKLKASELFAFDTETDSLDYMVANLVGLSFAVAEG- 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L+ LK   E++   K+G N+KYD  VL 
Sbjct: 381 EAAYVPVAHDYLDAPEQLDRD---------WVLAQLKPLLEDDTKAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 432 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             ++   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S+ME TG+ ID 
Sbjct: 492 DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++G+ FN++SPKQL  ILF ++  P   KT +G    
Sbjct: 552 MKLSAQSQEIAVRLGELEQKAYEIAGQPFNMNSPKQLQTILFEQMGLPVIKKTPSGTPS- 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++ Q    D P+   I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 TAEEVLQELALDYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQ 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 QGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q+GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 791 DKYFERYPGVMQYMEDTRSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  +T     +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESCLTEIESKVQQLMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 911 A----QLNVPLVAEAGHGDNWDQAH 931


>gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
 gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
          Length = 936

 Score =  997 bits (2578), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/984 (40%), Positives = 588/984 (59%), Gaps = 65/984 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++     +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+  ++FRNE+Y  YKANRP  PE L+PQ PL R AT+AF I   E++G+EADDIIA
Sbjct: 68  VIFDHSGMSFRNEMYDQYKANRPPAPEDLVPQFPLTREATKAFNIACKEVEGYEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTIIS+DKDLMQLV     + D +K ++ID + V++K+G+ P+++V +
Sbjct: 128 TLACQAREAGGQVTIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVVEKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRR+ ++E  E   L
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAEEIKQPKRRQTLIEMREQIEL 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L  D+ +   L+ L + + +   L++FL  +EF  L  R+A     +A  I   
Sbjct: 248 SKKLVQLDCDMELDFTLDDLEVMEPDAETLMTFLTEMEFRTLSKRMADRLGVEAPAIPEA 307

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                                                +     P
Sbjct: 308 PA-------------------------------------------AAPVSAAAEAPEAVP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + D Y  + +   +Q WV ++   G  +    T  +D      + I++     +     
Sbjct: 325 FDKDKYECVRDAAALQVWVDRIRERGRVAVDTETTGLDEMVVDLVGISLCVEAGE----- 379

Query: 423 KVETIFIDLSVHTSQDSTG-------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                +I L+     D               +E ++ LK   E+   LKIG N+KYD  +
Sbjct: 380 ---ACYIPLAHKAGGDDLFGGEGLSEGQMPLEEAVAMLKDVLEDPAVLKIGQNMKYDAKI 436

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
           LHRYG+ +   +D MLMSY L +G   H + ++++++L +T    K +L S KS++  D+
Sbjct: 437 LHRYGVDVAPIDDTMLMSYALHAGLHGHGMDTLSERYLDHTPIPIKPLLGSGKSAVTFDR 496

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +       +A E++++ L+LW   +P+L  E++  VYE L++P++ V+++ME  GI++D+
Sbjct: 497 VPIEDAVPYAAEDADITLRLWQTFKPQLHQERVTTVYETLERPLVPVLAEMERNGIKVDR 556

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L ++S   ++ +  LE  I++L+GE FN+ SP QLG+ILF K+    G + K G++  
Sbjct: 557 DTLSRMSNAFAQKMAGLEAEIHELAGETFNVGSPAQLGEILFDKMGLEGGKRGKNGKYS- 615

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T  D+ +    ++ + + +L+WRQLSK+KSTY D+L +HINK T RVHT Y+     TGR
Sbjct: 616 TGADILEDLATEHDLPRRVLDWRQLSKLKSTYTDALQDHINKDTGRVHTSYAQTGASTGR 675

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +AS +PNLQNIP++++ G++IR AF++     L+S DYSQIELRILAH+A I  L Q F 
Sbjct: 676 MASTDPNLQNIPVRSEEGRRIREAFVAEEGNVLLSLDYSQIELRILAHMAGIETLQQAFA 735

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH + A+E+FGV +E+++P++RR AK INF +IYGIS F LA  LRIPR +A  +I
Sbjct: 736 EGQDIHALTASEMFGVPLEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRKDAQGFI 795

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF RFPGI +Y++ T  F +++GYV+T+FGR+IH  EIN+ K       +RAAINAPI
Sbjct: 796 DRYFERFPGIRKYMDSTVEFAKEHGYVQTLFGRKIHTAEINA-KGPKAGFAKRAAINAPI 854

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ RRAMI + +++    L  +MLLQ+HDEL+FEVPE  +          ME A 
Sbjct: 855 QGTAADVIRRAMIRMPEAI--AHLPARMLLQVHDELLFEVPEAAVEDTIAAAREVMENAA 912

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
            P ++L V L V+     NW E +
Sbjct: 913 DPAVHLDVKLVVDAGRGKNWAEAH 936


>gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316]
          Length = 930

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/984 (36%), Positives = 548/984 (55%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMATKLQDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L +++     L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLHVQEPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T                                         +  E  + 
Sbjct: 301 GSKPAAKVKETI---------------------------------------AVDAEEPED 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ + Y  I++   + +W++KL+     +F   TD++D   +  + ++ +T    
Sbjct: 322 EEAVTLSFEHYETILDESQLVEWIEKLKKAPVFAFDTETDSLDNISANMVGLSFATAPGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  +K   E++  LK+G N+K+D+ +L 
Sbjct: 382 -AAYVPVAHDYLDAPDQIPRD---------RVLELMKPVLEDDKALKVGQNLKFDRGILQ 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+LDS    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 432 NYGIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L+V++ ++ P++ V+S++E  G++ID 
Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDP 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+++ L  LE+  ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 552 TVLHNHSGELAQRLTELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K IL++R L+K+KSTY D LP  IN +T RVHT Y  A   TGR
Sbjct: 612 SEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 731 EGQDIHRATAAEVFGLPLESVTNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDIKSSNAARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   LE  K   KM++Q+HDELVFEV ++++   S+ I   ME   
Sbjct: 851 QGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLEAVSRKIHELMEN-- 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              + L VPL V +    NW + +
Sbjct: 909 --SMTLDVPLLVEVGSGENWDQAH 930


>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 928

 Score =  995 bits (2573), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/984 (35%), Positives = 546/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            ++P                                         + +  + + ++    
Sbjct: 301 GVKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 930

 Score =  995 bits (2572), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/984 (36%), Positives = 553/984 (56%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I        K     + E  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLSFRGAKTMAGKLEENK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +  E L ++  +   L+S  K  EF +    V       A 
Sbjct: 241 EVAYLSYKLATIKTDVELELGCEQLEVQQPSADDLLSLFKKYEFKRWTTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                   +T  I+++   ++        
Sbjct: 301 GAKPAAK------------------------------PKETIVIDADDQAEEEAAA---- 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ + Y  I+    +  W++KL+     +F   TD++D   +  + ++ +T    
Sbjct: 327 -----LSFEHYETILEETQLVAWIEKLKKAPVFAFDTETDSLDNITANMVGLSFATEPGI 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D           +    + +L  LK   E+++ LK+G N+KYD+ +L 
Sbjct: 382 -AAYVPVAHDYLDAP---------EQLSRERVLELLKPILEDDNALKVGQNLKYDRGILQ 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+LDS    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 432 NYGIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L+V++ ++ P++ V+S++E  G++ID 
Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDP 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+++ L  LE+  ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 552 TVLHNHSGELAQRLTELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A   TGR
Sbjct: 612 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 731 EGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDIKSSNAARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   LE  K   KM++Q+HDELVFEV ++++ + S+ I   ME   
Sbjct: 851 QGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLDSVSKTIHELMEN-- 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              + L VPL V +    NW + +
Sbjct: 909 --SMKLDVPLLVEVGSGENWDQAH 930


>gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
 gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
          Length = 937

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/974 (40%), Positives = 575/974 (59%), Gaps = 50/974 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H AVIF
Sbjct: 11  HLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVAVIF 70

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +GFEADDIIAT  
Sbjct: 71  DKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEQEGFEADDIIATLA 130

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +QAL
Sbjct: 131 CQARDAGGRVTIISSDKDLMQLVGGGVEMLDAMKNKRIDTDGVFEKFGVGPDRVVDVQAL 190

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRR+ ++E      LS++
Sbjct: 191 AGDSVDNVPGAPGIGIKTAALLINEYGSLEDLLNRAEEIKQPKRRQTLIENRAQIELSKQ 250

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  ++ +   L+ L + D +  +L+SFL  +EF  L  RVA     +A  I      
Sbjct: 251 LVQLDNNMELDFTLDDLGVRDPDADQLLSFLAEMEFRTLSKRVADQLGKEAPAI------ 304

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                                                 +   Q         ++  P ++
Sbjct: 305 -------------------------------------VDAPAQSTDTAEAATVADMPFDS 327

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            SY  + + + +++WV ++   G  +    T   D      + I++              
Sbjct: 328 SSYECVRDAEALKKWVIQIRERGWVAVDTETTGFDEMVVDLVGISLCVEPGSACYIPLTH 387

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                  +  S D        ++ L+ LK   E+   LKIG N+KYD  +  R GI +  
Sbjct: 388 KSGSSDDLFGSDDLADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFARRGIDVAP 447

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
            +D MLMSY + +G+  H + ++++++L++T    K +L + KS+I  D++       +A
Sbjct: 448 IDDTMLMSYAMHAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDAVAYA 507

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E++++ L+LW L +P+L    +  VYE L++P++ V+++ME  GI++D+D L ++S   
Sbjct: 508 AEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDTLSRMSNAF 567

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           ++ +  LE  I++L+G+ FN+ SPKQLG+ILF KL    G K KTG +  T  D+ +   
Sbjct: 568 AQKMAGLEAEIHELAGQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAY-ATGADILEDLA 626

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT Y      TGRLAS +PNLQN
Sbjct: 627 TEHALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGANTGRLASTDPNLQN 686

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IPI+++ G++IR AF+      L++ DYSQIELRILAH+A I  L Q F    DIH + A
Sbjct: 687 IPIRSEEGRRIREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTA 746

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+F V +E+++  +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF RFPGI
Sbjct: 747 SEMFNVPLEEMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFERFPGI 806

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+++T  F +++G+V+T+FGR+IH  EI S K       +RAAINAPIQG+AAD+ RR
Sbjct: 807 RRYMDETVAFAKEHGHVQTLFGRKIHTPEI-SAKGPRAGFAKRAAINAPIQGTAADVIRR 865

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI +  ++    L  +MLLQ+HDEL+FEVPE  +    +     ME A  P ++L V L
Sbjct: 866 AMIRMPAAI--AHLPARMLLQVHDELLFEVPEAAVEDTIETARQVMETAADPAVHLDVKL 923

Query: 963 KVNIKVSNNWQEEN 976
            V+     NW E +
Sbjct: 924 VVDAGRGQNWAEAH 937


>gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 928

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/984 (35%), Positives = 545/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKSPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
 gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
          Length = 931

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/986 (36%), Positives = 551/986 (55%), Gaps = 73/986 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+         SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYH----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ DYK++RP +P+ L  Q+  +    +A G P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEDYKSHRPPMPDDLRAQIEPLHNMVKAMGFPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  EG  V I + DKD+ QLV+P   L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAQQAANEGKPVLISTGDKDMAQLVTPDITLINTMNNTILGPDEVRAKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + ++ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFANLDKIAGLSFRGAKTMAAKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L L + +   L       EF + +  VA+    + +
Sbjct: 241 DVAYLSYKLATIKTDVELVLNSEQLTLIEPDTDVLKEMFTRYEFKRWLADVASGQWLNGS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +                                        +   Q   K  ++   K
Sbjct: 301 GRK---------------------------------------HVQPAQPFVKPSVDDEPK 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++   ++ + Y  I++ + +  W+++++T G  +F   TD++D   +  + ++ +     
Sbjct: 322 VAASVLSQEGYVTILDEQTLIAWLERIKTKGVFAFDTETDSLDTISTTLVGVSFAINAG- 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   ++D      +D         ++L+ LK   E+   LKIG N+K+DK V+ 
Sbjct: 381 EAAYLPLGHDYLDAPEQLDRD---------KVLALLKPVLEDASVLKIGQNLKFDKGVMA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI++RG   D ML SYVLDS    HD+ S+++++L++     +EI    K+ +  ++I
Sbjct: 432 RYGITLRGIAFDTMLESYVLDSVAGRHDMDSLSERYLNHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L  +L  KL     L  V++ +D P++ ++S+ME  G+ ID 
Sbjct: 492 PLEQAAVYAAEDADVTLRLHQVLSEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDT 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E+++ L  LE   ++L+GE FNLSS KQL  IL+ KL+ P   KT  G   T
Sbjct: 552 AILAEHSKELTQRLAELEVRAHELAGEVFNLSSTKQLQAILYEKLQLPVTKKTPKGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  A T TGR
Sbjct: 612 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPMMINPLTKRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH++    L + F 
Sbjct: 671 LSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYCIVAADYSQIELRIMAHLSCDAGLLKAFS 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIHR  AAE+FG+ I+KV+ + RR AK INF +IYG+S F L+ QL I R+EA  Y+
Sbjct: 731 DGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMSAFGLSRQLGIGRNEAQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    + GYV T+ GRR++  +I+S  +  R   ERAAINAP+
Sbjct: 791 NLYFERYPGVQHYMEQTRQQAAEQGYVATLDGRRLYLPDIHSRNAISRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSL--EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           QG+AADI ++AM S+   L  ++  L   M++Q+HDELVFEV E  +  A   I   ME 
Sbjct: 851 QGTAADIIKKAMASIDAWLLSQEEPL-INMIMQVHDELVFEVHESVLEGAKAKIKALMES 909

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL+V++    NW E +
Sbjct: 910 CM----QLNVPLQVDVGSGKNWDEAH 931


>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 928

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/984 (35%), Positives = 545/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   S+ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVSKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 928

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/984 (35%), Positives = 545/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
          Length = 930

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/984 (36%), Positives = 536/984 (54%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIIQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVEAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE  G  V I + DKD+ QLV+P   L +T+    +  + V  K+G+PP  ++   
Sbjct: 121 LARRAELAGRHVLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVCDKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G+L+ I  +  R+        K     +L   
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGIGSLKTIYDDLDRVATLSFRGAKTMGAKLLLNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS  L  ++TDV +    + L ++  +   L       EF + ++ V        A
Sbjct: 241 EKADLSYLLATIKTDVDLAQGGDDLAIKVLDSETLHQLFSRYEFKRWLSDVQEGSWLTGA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                              +   +T       TP  L  E    
Sbjct: 301 -----------------------------------TGGRKTRGNKIADTPAALAPEVF-- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                +  + Y  I++   ++  + +L   GS +F   TD++D   +  + I+ +     
Sbjct: 324 ---VTLTREGYQTILDEAALEALITRLRQAGSFAFDTETDSLDVLSANLVGISCADKPG- 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +  +I L+ H   D+       + +L+ L+   E+E   KIG N+KYD  V+ 
Sbjct: 380 -------QACYIPLA-HDYLDAPH-QLDRQYVLARLQPLLEDEGIAKIGQNLKYDIGVMA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI++RG   D ML SYVL+S    HD+ S++ + L +     +EI    K  +  ++I
Sbjct: 431 RYGITLRGVAFDTMLESYVLNSVAGRHDMDSLSARHLDHKTITFEEIAGKGKGQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V LQL   L P L  E    H++  +D P++ V+S+ME TG+ ID 
Sbjct: 491 PLEQASEYAAEDADVTLQLHQHLWPMLEGESGPSHIFRDIDMPLVPVLSRMERTGVLIDS 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q S E++  L +LE+  +  +GE FNLSS KQL  ILF K + P   KT  G   T
Sbjct: 551 AILGQHSQELAVRLEALEQQAHSEAGEPFNLSSTKQLQSILFEKQQLPVLKKTPGGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++      + + ILE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 611 NEEVLVELAEQGYALPQVILEYRTLAKLKSTYTDKLPLMVNPLTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP+++D G++IR+AFI+P   ++++ADYSQIELRI+AH++    L Q F 
Sbjct: 671 LSSSDPNLQNIPVRSDEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHLSGDKGLLQAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E VS   RR AK INF +IYG+S F LA QL I R EA  Y+
Sbjct: 731 AGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+      GYVET+ GRR++  EIN+     R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYLPEINARNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L++ +L  +M++Q+HDELVFEVPE ++      +   ME   
Sbjct: 851 QGTAADIIKRAMIAVDGWLQETQLEVRMIMQVHDELVFEVPESQVEAVVCQVRVLMEN-- 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              ++L VPLKV+I    NW + +
Sbjct: 909 --SLSLAVPLKVDIGCGENWDQAH 930


>gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
 gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
          Length = 936

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/977 (40%), Positives = 581/977 (59%), Gaps = 51/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++     +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+   +FRN++Y  YKANRP  PE L PQ PL R AT+AF I   E++G+EADDIIA
Sbjct: 68  VIFDHSGKSFRNDLYDLYKANRPPAPEDLRPQFPLTRDATRAFNIACKEVEGYEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + A   G   TIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +
Sbjct: 128 TLAHQARAAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKRIDTDGVHEKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++E  +   L
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAEEIKQPKRRQTLIEKRDQIEL 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L   + +   ++ L +++     L++FL  +EF  L  R+A     +A  I   
Sbjct: 248 SKQLVQLDCAMELDFTIDDLEVQEPEAETLLTFLAEMEFRTLTKRMADQLGLEAPAI--- 304

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                                    E   Q+     +      P
Sbjct: 305 ----------------------------------------PEAPAQQGTSTEVTPPEAVP 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + + Y  + + +++  WV ++   G  +    T  +D      + I++      +    
Sbjct: 325 FDAEKYQCVTSAEELAPWVAQIRERGYVAVDTETTGLDEMVVDLVGISLCVEPG-EACYI 383

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +   +          + L  LK   E+   LKIG N+KYD  +LHRYG  
Sbjct: 384 PLTHKVGGDDLFGGEGLAEGQMPLDQALEMLKPVLEDPAILKIGQNMKYDAKILHRYGAD 443

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY L +G   H + ++++++L +     K +L S KS+I  D++  +   
Sbjct: 444 VAPIDDTMLMSYALHAGLHGHGMDTLSERYLDHKPIPIKPLLGSGKSAITFDRVPIANAV 503

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+LW L +P+L  E++  VYE L++P++ V++QME  GI++D+++L ++S
Sbjct: 504 PYAAEDADITLRLWQLFKPQLHQEQVTTVYETLERPLVPVLAQMERHGIKVDREVLSRMS 563

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I++++G  FN+ SPKQLG+ILF KL+ P G K KTG +  T  D+ +
Sbjct: 564 NAFAQKMAGLESEIHEMAGADFNVGSPKQLGEILFDKLELPGGKKGKTGAY-ATGADILE 622

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++ +   +L+WRQLSK+KSTY D+L +HIN  T+RVHT Y+     TGR+AS +PN
Sbjct: 623 DLATEHALPGLVLDWRQLSKLKSTYTDALQDHINAETRRVHTSYAQTGASTGRMASTDPN 682

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T+ G++IR AF++     L+S DYSQIELRILAH+A I  L Q F    DIH 
Sbjct: 683 LQNIPVRTEEGRRIREAFVAGEGNVLLSLDYSQIELRILAHMAGIDALKQAFAEGQDIHA 742

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V + +++P +RR AK INF +IYGIS F LA  LRIPR EA D+I RYF RF
Sbjct: 743 MTASEMFDVPMAEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRKEAQDFIDRYFQRF 802

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y++ T  F +++G+V+T+FGR+IH  EIN+ K       +RAAINAPIQG+AAD+
Sbjct: 803 PGIRRYMDSTVEFAKEHGFVQTLFGRKIHTAEINA-KGPRAGFAKRAAINAPIQGTAADV 861

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI +  ++    L  +MLLQ+HDEL+FEVPE  +     +    ME A  P ++L 
Sbjct: 862 IRRAMIRMPGAI--AHLPARMLLQVHDELLFEVPEAAVEETIAVAKEVMEGAANPAVHLD 919

Query: 960 VPLKVNIKVSNNWQEEN 976
           V L V      NW E +
Sbjct: 920 VKLLVEAGQGQNWAEAH 936


>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
 gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
           exonuclease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 928

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/984 (35%), Positives = 545/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193]
 gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193]
          Length = 935

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/977 (40%), Positives = 580/977 (59%), Gaps = 52/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++     +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+   +FRN++Y  YKANRP  PE L PQ PL R AT+AF I   E++GFEADDIIA
Sbjct: 68  VIFDHSGKSFRNDMYELYKANRPPAPEDLRPQFPLTRDATRAFNIACKEVEGFEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + A   G   TIIS+DKDLMQLV     + D +K ++ID E V +K+G+ P+++V +
Sbjct: 128 TLAHQARDAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKRIDSEGVHEKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++E  +   +
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAEEIKQPKRRQTLIEKRDQIEM 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L   + +   LE L + D +   L+ FL  +EF  L  R+A     +A  I  V
Sbjct: 248 SKRLVQLDCAMELDFSLEDLEVLDPDPEVLLGFLADMEFRTLTKRMADQLGREAPAIPEV 307

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                +                                  + +TP  +            
Sbjct: 308 STSGGSA---------------------------------APETPIAVA----------- 323

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + + Y  I +   +Q+W+ +    G  +    T  +DA     + +++           
Sbjct: 324 FDAEKYQCISDAAGLQEWIDQAYERGYVAIDTETTGLDAMVVDLVGVSLCVEPG-TACYI 382

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +   +         ++ L  LK   E+   LKIG N+KYD  +LHRYGI 
Sbjct: 383 PLTHKQGGDDLFGGEGLAEGQMPLEQALEMLKPMLEDPAVLKIGQNMKYDAKILHRYGID 442

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY L +G  +H +  +++++L +     K +L + KS+I  D++  +   
Sbjct: 443 VAPIDDTMLMSYALHAGEHNHGMDILSERYLDHKPIPIKPLLGTGKSAITFDRVPIADAV 502

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+LW   +P+L   ++  VYE L++P++ V+++ME  GI++D+D L ++S
Sbjct: 503 PYAAEDADITLRLWQHFKPELHQRQVTVVYETLERPLVPVLAEMERNGIKVDRDTLSRMS 562

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ + +LE+ I+ L+G+ FN+ SPKQLG+ILF KL+ P G K KTG +  T  D+ +
Sbjct: 563 NAFAQKMAALEDEIHALAGQPFNVGSPKQLGEILFDKLELPGGKKGKTGAY-ATGADILE 621

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT Y      TGR+AS +PN
Sbjct: 622 DLATEHALPALVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYIQTGANTGRMASSDPN 681

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF+      L+S DYSQIELRILAH+A I  L   F    DIH 
Sbjct: 682 LQNIPVRSEEGRRIREAFVPEQGNVLLSLDYSQIELRILAHVAGIDALKAAFAAGQDIHA 741

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +E+++  +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF RF
Sbjct: 742 MTASEMFDVPMEEMTADIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFERF 801

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++T  F +++GYV+T+FGR+IH  EI + K       +RAAINAPIQG+AAD+
Sbjct: 802 PGIRAYMDRTVEFAKEHGYVQTLFGRKIHTPEI-AAKGPRAGFAKRAAINAPIQGTAADV 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAM+ +  ++    L  +MLLQ+HDEL+FEVPE  +    +     ME A  P ++L 
Sbjct: 861 IRRAMVKMPPAI--AHLPARMLLQVHDELLFEVPEAAVEETIETARRVMENAADPALHLD 918

Query: 960 VPLKVNIKVSNNWQEEN 976
           V L V+    NNW E +
Sbjct: 919 VKLSVDAGRGNNWAEAH 935


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/977 (42%), Positives = 590/977 (60%), Gaps = 51/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + ++ +      +H A
Sbjct: 7   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLHRYVEANTGPEAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI+G+EADDIIA
Sbjct: 67  VIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRRATEAFNIACKEIEGYEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  A + G  VTIIS+DKDLMQLV     + D +K  +ID+E V  K+G+ P+++V +
Sbjct: 127 TLSCQAREAGGRVTIISSDKDLMQLVGGGVEMLDAMKNLRIDVEGVEAKFGVGPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG LE +L  A  IKQ KRR+ ++E+ E   L
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGTLEELLDRAGEIKQPKRRQTLIEHREQIEL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D P+   LE L + D +G  L+ FL  +EF  L  R+A     D   +EP 
Sbjct: 247 SKRLVQLDCDTPLDFTLEDLEVRDPDGETLLGFLNEMEFRTLTKRIA-----DQMGVEPP 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L    T     A ET                                       +    
Sbjct: 302 ALPEVNTRGGDDAPET---------------------------------------VEMPA 322

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ DSY  + N   +  W+ ++   G  +    T  +D   +  + I ++T         
Sbjct: 323 IDPDSYETVTNADQLAVWIGRIRERGYVAVDTETTGLDEMRADLVGICLATEPGLACYVP 382

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     +  ++D         E L  LK   E+E  LKIG N+KYD  +L R GI 
Sbjct: 383 LGHKAAEGEGLFATEDLAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYDAKILKRCGID 442

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539
           +   +D ML+SY L++G   H + ++A ++LS+     KE+L + K+ I  DK+   +  
Sbjct: 443 VAPCDDTMLISYALNAGLHQHGMDALADRYLSHTCIPIKELLGTGKAMITFDKVPIDKAT 502

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++V L+LW +L+P+L  +K+  VYE L++P+  V+++ME+ GI++D+D L ++S
Sbjct: 503 RYAAEDADVTLRLWQVLKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIKVDRDTLSRMS 562

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           +  ++ + +LE  I++L+GE+FN+ SPKQLG+ILF K+    G K KTG + T A  LE 
Sbjct: 563 SAFAQKMGALEAEIHELAGERFNVGSPKQLGEILFDKMGMEGGKKGKTGAYATGADVLED 622

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +L+WRQLSK+KSTY DSL  HI+  T RVHT Y      TGRLAS +PN
Sbjct: 623 L-ATLHELPARVLDWRQLSKLKSTYTDSLQTHIHPETGRVHTSYQQTGANTGRLASTDPN 681

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AFI+   K L+S DYSQIELRILAHIA I  L Q F+   DIH 
Sbjct: 682 LQNIPVRSEEGRRIREAFIAEEGKVLLSLDYSQIELRILAHIADIPALKQAFDEGQDIHA 741

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+FGV +E+++P++RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF RF
Sbjct: 742 ATASEMFGVPMEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFERF 801

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI +Y+ +T  F ++NGYV+T+FGRRIH  EI++ K        RAAINAPIQG+AADI
Sbjct: 802 PGIKDYMAETTEFGKKNGYVQTLFGRRIHTPEIDA-KGPRAGFARRAAINAPIQGTAADI 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI +  ++    L  KMLLQ+HDELVFEV E      +++    ME A  P + + 
Sbjct: 861 IRRAMIRMPDAI--LGLPAKMLLQVHDELVFEVDEAAADEVAEVARGVMETAADPAVRID 918

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+     NW E +
Sbjct: 919 VPLVVDAGQGRNWAEAH 935


>gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 929

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/984 (36%), Positives = 550/984 (55%), Gaps = 71/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YKA+RP +PE L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P+  L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAVQAEKAGKPVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + ++ 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAELSFRGAKTMAPKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L + + +   L       EF + ++ V +    +  
Sbjct: 241 DVAYLSYQLATIKTDVELDLSSEQLTVNEPDVDELHRLFSRYEFKRWLSDVESGTWLEGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                V  ++    +  A E+                                       
Sbjct: 301 KSSQPVPAVSKVVVEQAAEES--------------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ D Y  I++ + +  W+++L+     +F   TD +D   +  I ++ +    +
Sbjct: 322 -NAPALSADGYVTILDEETLLDWIERLKQAEVFAFDTETDGLDTLTANLIGLSFAIKPGE 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+ H   D+  +     ++L+  K   E+E  LKIG N+K+DK V+ 
Sbjct: 381 --------AAYLPLA-HDYLDAP-EQLDRAKVLALFKPLLEDEKLLKIGQNLKFDKGVMQ 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I +RG   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I
Sbjct: 431 RYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V L L   L  KL     L  V++ +D P++ V+S++E TG+ ID 
Sbjct: 491 ALEQAGPYAAEDADVTLHLHQKLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDP 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E++  L  LE   Y+L+GE+FNLSS KQL  IL+ K K P   KT  G   T
Sbjct: 551 AILAEHSKELTTRLAELETQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKTPKGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  A T TGR
Sbjct: 611 NEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH++    L   F 
Sbjct: 670 LSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAFA 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N LDIHR  A+E+FG  ++KV+ + RR AK INF +IYG+S F L+ QL IPRSE+  Y+
Sbjct: 730 NGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    ++GYV T+ GRR++  +I+S  +  R   ERAAINAP+
Sbjct: 790 NLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AMI++   L+      KM++Q+HDELVFE+ +  I  +   I   ME   
Sbjct: 850 QGTAADIIKKAMIAIDDWLQKDAPQVKMIMQVHDELVFEIHDSVIEESISKIKTLMEGCM 909

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL+V+I    NW E +
Sbjct: 910 ----ELNVPLQVDIGTGMNWDEAH 929


>gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 928

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/984 (35%), Positives = 544/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 928

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/984 (35%), Positives = 544/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP 
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPT 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   ++  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWIQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 934

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/985 (36%), Positives = 545/985 (55%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDG------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                          +   +  +QT   +   +        + +
Sbjct: 295 ------------------------------GTGVVTADEQTKTSSVTVSTAASHAAAIPE 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ +  +  
Sbjct: 325 SPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEG- 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLDRD---------WVIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDD 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 555 MLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 615 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 674 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 734 DGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINAP+
Sbjct: 794 DKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 854 QGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESA 913

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 914 A----ELAVPLVAEAGHGDNWDQAH 934


>gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 928

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/984 (36%), Positives = 544/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P      T                        SLS+  + ++ E             
Sbjct: 301 GAKPAAKPQETVVID-------------------ESLSEPAAALSYEN------------ 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 330 ----------YVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 928

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/984 (35%), Positives = 544/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +       
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQVK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN ++ RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKSGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
 gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
          Length = 933

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/978 (40%), Positives = 593/978 (60%), Gaps = 54/978 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + +         +H A
Sbjct: 6   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVDGDHGPDAPTHLA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF IP  E++G+EADDIIA
Sbjct: 66  VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRAATEAFNIPCKELEGYEADDIIA 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  A   G  VTI+S+DKDLMQLV     ++D +K ++ID + V +K+G+ P+++V +
Sbjct: 126 TLSNQARDAGGRVTIVSSDKDLMQLVGDGVEMFDAMKNKRIDRDGVFEKFGVFPDRVVDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRR+ +++      L
Sbjct: 186 QALAGDSVDNVPGAPGIGVKTAALLINEYGSLEDLLDRAEEIKQPKRRQTLIDMRAQIEL 245

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L L D +  +L+SFL  +EF  L  R+A     +A  I   
Sbjct: 246 SKRLVELDANTPLDFTLDDLELRDPDPEKLLSFLAEMEFRTLTKRIADKLGAEAPVIA-- 303

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                             + +   +E+ PQ           Q P
Sbjct: 304 ----------------------------------EKASPEAEEAPQP---------EQPP 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   Y  + +   ++ W+ +    G  +    T +++   +  + I+++          
Sbjct: 321 FDASRYECVRDAAALETWIAQARERGWVAVDTETTSLNEMTADLVGISLAVEPG-AACYI 379

Query: 423 KVETIFIDLSVHTSQDSTGK-NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
            +     D       D   +     ++ L  LK   E+   LKIG N+KYD  +  RYG+
Sbjct: 380 PLGHRDGDAGDLFGSDKLAEGQLPLQQTLDLLKPMLEDPAILKIGQNMKYDAKIFARYGV 439

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           ++   +D ML+SY +  G   H + ++++++LS+T    K +L S KS+I  DK++  + 
Sbjct: 440 AVAPIDDTMLLSYAMHGGLHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKVAIDEA 499

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A E++++ L+LW L +P+L   ++  VYE L++P++ V+++ME+ G+++D+++L ++
Sbjct: 500 TAYAAEDADITLRLWQLFKPQLHRAQVTTVYETLERPLVPVLAEMEMHGVKVDREVLSRM 559

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S   ++ +  LE  I++L+GE FN+ SP Q+G+ILF K+    G K KTG++ T A  LE
Sbjct: 560 SNAFAQKMAGLEAEIHELAGEPFNVGSPAQVGEILFDKMSLEGGKKGKTGKYSTPADVLE 619

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +   ++ +   IL+WRQLSK+KSTY D+L  HIN  T RVHT YS+    TGRLAS +P
Sbjct: 620 DL-ATEHELPARILDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGANTGRLASTDP 678

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T+ G++IR AF++ P   L+S DYSQIELRILAHIA I  L Q F + LDIH
Sbjct: 679 NLQNIPVRTEEGRRIREAFVAEPGNVLLSLDYSQIELRILAHIADIPALKQAFADGLDIH 738

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR+EA ++I RYF R
Sbjct: 739 AMTASEMFDVPLDQMTPEVRRRAKAINFGVIYGISGFGLARNLRIPRAEAQEFIDRYFER 798

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPGI  Y++ T  F +++G+V+T+FGRRIH  EIN+ K        RAAINAPIQG+AAD
Sbjct: 799 FPGIRTYMDDTIAFAKEHGFVQTLFGRRIHTPEINA-KGPHAGFARRAAINAPIQGTAAD 857

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + RRAM+ +  ++ D  L  KMLLQ+HDEL+FEV EE +          ME A  P + L
Sbjct: 858 VIRRAMVRMPDAIRD--LPAKMLLQVHDELLFEVAEEAVEDTIAAARDIMEGAADPAVRL 915

Query: 959 RVPLKVNIKVSNNWQEEN 976
            V L V+     NW E +
Sbjct: 916 DVRLVVDAGRGANWAEAH 933


>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
 gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
          Length = 930

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/989 (36%), Positives = 539/989 (54%), Gaps = 72/989 (7%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  EN L LVDGSS++YRAF+A P L+   +  P  A+ G  NML  L+   +     
Sbjct: 1   MAKIAENPLVLVDGSSYLYRAFHAFPPLTNSLN-EPTGAMYGVLNMLKSLISQVQ----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           SH AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EAD
Sbjct: 56  SHIAVVFDAKGKTFRDEMFEQYKSHRPPMPDELRSQILPLHNIIRALGIPLLVVEGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A K G  V I + DKD+ QLV     L +T+    +D E VI+K+G+PPE 
Sbjct: 116 DVIGTLAVQASKAGKKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREGVIEKYGLPPEL 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRREN 232
           ++   AL GDS DNIPG+PG+G KTA  LLQ  GN+ +I  N  ++        KK  + 
Sbjct: 176 IIDYLALMGDSSDNIPGVPGVGEKTALSLLQGIGNMTDIYANLEKVAELPIRGAKKLGDK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +LE  E A LS  L  ++TDV + I  E L     N  +L+ +    EF + +  +    
Sbjct: 236 LLEAKEMADLSYALATIKTDVKLEITPEQLTFGSANNDKLVEYFGRYEFKRWLTEIMHNG 295

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                N     + IN  +    A E E                                 
Sbjct: 296 SSSVTNGSEQPVKINNYQATPPATEPESAV------------------------------ 325

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                  +  I+   Y  I++  D ++W+ KL      +    TD +D   +  + I+ +
Sbjct: 326 -------KIEIDRSKYECILSVADFEKWLDKLAQAKLIAVDTETDNLDYMSANLVGISFA 378

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            L+  +     +   +I            +       LS LK   EN    K+G NIKYD
Sbjct: 379 -LENGEAAYLPLRHNYIGAP---------QQIDFDTALSRLKPILENPVIEKVGQNIKYD 428

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
             +  R GI+++G   D ML+SYVLDS    H++  +A+++L +     +EI    K  +
Sbjct: 429 LSIFARNGINVQGVTYDTMLLSYVLDST-GRHNMDDLAKRYLGHQTISFEEIAGKGKGQL 487

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITG 587
             D+I       +A E++++ ++L  +L  K+     L+ +Y  ++ P++ V+S+ME  G
Sbjct: 488 TFDQIPLEHATTYAAEDADITMKLQQVLWEKVSEQPTLVKLYRTMELPLLSVLSRMERNG 547

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID + L   S +I++ L +LE+  Y+L+G+ FNL+S KQL +ILF KL  P   KT  
Sbjct: 548 VLIDSNTLLTQSNKIAERLTALEQQAYELAGQTFNLASTKQLQEILFDKLGLPVLKKTPK 607

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   D+ + K ++E R LSK+KSTY D LP  INK T RVHT Y  A 
Sbjct: 608 GAPSTNEEVLEEL-AYDHELPKLLVEHRGLSKLKSTYTDKLPQMINKHTGRVHTSYHQAV 666

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIPI+ + G++IR+AFI      +++ADYSQIELRI+AH++K   L
Sbjct: 667 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIPREGFTMVAADYSQIELRIMAHLSKDQGL 726

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAEIFG+ +E+V+ + RR AK INF +IYG+S F L+ QL IPR++
Sbjct: 727 INAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIYGMSSFGLSRQLGIPRND 786

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+PG+  ++   +   +  GYV T+F RR++  +INS  +  R   ER A
Sbjct: 787 AQKYMDLYFQRYPGVQTFMTDIRETAKAQGYVATLFDRRLYLPDINSSNAIRRKAAERVA 846

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAMI + K +       +M++Q+HDELVFEV  E++   SQ+I  +
Sbjct: 847 INAPMQGTAADIIKRAMIDLDKQIV-GNPDIQMIMQVHDELVFEVRSEKVEEFSQLIKQT 905

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           MEKA      L VPL V++ V  NW E +
Sbjct: 906 MEKAA----QLVVPLIVDVGVGQNWDEAH 930


>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
 gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
          Length = 934

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/985 (36%), Positives = 544/985 (55%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDG------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                          +   +  +QT   +   +        + +
Sbjct: 295 ------------------------------GTGVVTADEQTKTSSVTVSTAASHAAAIPE 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ +  +  
Sbjct: 325 SPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEG- 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLERD---------WVIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDD 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 555 MLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 615 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 674 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 734 DGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 794 DKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 854 QGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESA 913

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 914 A----ELAVPLVAEAGHGDNWDQAH 934


>gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 928

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/984 (35%), Positives = 544/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLNAVAKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601]
 gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601]
          Length = 935

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/977 (40%), Positives = 586/977 (59%), Gaps = 50/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML K ++++      +H A
Sbjct: 6   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQKYVEDNAGPDAPTHVA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E++G+EADDIIA
Sbjct: 66  VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRRATEAFNIACKELEGYEADDIIA 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTIIS+DKDLMQLV     + D +K  +ID + V +K+G+ P+++V +
Sbjct: 126 TLARQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNRRIDRDGVFEKFGVFPDRVVDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRR+ ++E  E   L
Sbjct: 186 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEDLLDRAEEIKQPKRRQTLIEKREQIEL 245

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L + D +   L+ FL  +EF  L  R+A   D +A    PV
Sbjct: 246 SKRLVQLDEETPLEFGLDDLEVRDPDPEVLLGFLAEMEFRSLTKRIADQLDAEA----PV 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + D                             + + +    E TP+   +E         
Sbjct: 302 IPDT----------------------------TPEGANPAEEGTPEMPAIE--------- 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
              D+Y  +   +D+  ++      G  +    T  ++      + I++ T   +     
Sbjct: 325 --PDTYIWVKTAEDLAPFIDAAHQRGWVAVDTETTGLNEMACDLVGISLCTEPGEACYIP 382

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                  D  +    D        +  L  LK   E+   +KIG N+KYD  +  RYG+ 
Sbjct: 383 LAHRADSDGGLFGDGDLAEGQMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARYGVR 442

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY +++G   H + ++++++LS+T    KE+L S K     D++      
Sbjct: 443 IAPIDDTMLMSYAMNAGLHGHGMDALSERYLSHTPIPIKELLGSGKKMKTFDQVPIEDAV 502

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A E++++ L+LW LL+P+L    +  VYE +++P++ V+++ME+ G+Q+D+D L ++S
Sbjct: 503 KYAAEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAGVQVDRDTLSRMS 562

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              S+ + +LE  I++L+GE FN+ SPKQLG+ILF K+    G K KTG + T A  LE 
Sbjct: 563 NAFSQKMAALEAEIHELAGESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLED 622

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ +   +L+WRQLSK+KSTY D+L  HINK T RVHT Y ++   TGRL+S +PN
Sbjct: 623 L-ATEHELPARVLDWRQLSKLKSTYTDALQEHINKDTGRVHTSYVISGANTGRLSSTDPN 681

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++P  K +++ DYSQIELRILAH+A+I  L Q F +  DIH 
Sbjct: 682 LQNIPVRSEEGRRIREAFVAPEGKTIVALDYSQIELRILAHMAEIDALKQAFRDGQDIHA 741

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +++++ ++RR AK INF +IYGIS F LA  LRIPRSEA  +I RYF RF
Sbjct: 742 MTASEMFNVPMDEMTSEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGFIDRYFERF 801

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y++ T  F +++  VET+FGR IH  EI + K       +RAAINAPIQG+AADI
Sbjct: 802 PGIRTYMDDTVAFAKEHKRVETLFGRVIHTPEI-AAKGPRAGFAKRAAINAPIQGTAADI 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI +  ++   KL   MLLQ+HDEL+FEV +             ME A  P + L 
Sbjct: 861 IRRAMIRMPDAI--EKLPATMLLQVHDELIFEVEQGAEEALISAARTVMEGAAEPVVKLD 918

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+     +W E +
Sbjct: 919 VPLVVDAGQGKSWAEAH 935


>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 923

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/985 (36%), Positives = 541/985 (54%), Gaps = 79/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRA++A P  +   +G P  A+ G  NML  +L+    E    H AV
Sbjct: 6   ENPLILIDGSSYLYRAYHAAPNFTN-SEGQPTGAVYGVINMLRSMLRQFSTE----HIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E++ DYKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMFADYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+ +  +D   V++K+GI PE ++   
Sbjct: 121 LATQASKAGMPVLISTGDKDMAQLVDENITLINTMTDVVMDPAGVVEKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ +      I        K   + +L+  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDALYDRLDEIPALGFRGSKTMPKKLLDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV + I  + L+  + +   L      L+F + +  + +  D    
Sbjct: 241 EGAYLSYQLATIKLDVELDITPQELVKAEPDVDELTRLFGQLQFRRWLEEMLSGSDGKI- 299

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                      +  E+  Q +  E++  
Sbjct: 300 -------------------------------------------VADEKAAQAVASEKV-- 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I++      W+++L++  + +F   TD++D   +  + ++ +  + K
Sbjct: 315 -IAPVIDRSGYEVILDQSRFDAWLEQLKSAEAFAFDTETDSLDYMVANLVGVSFAVEEGK 373

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+ +  KIG N+KYD  V+ 
Sbjct: 374 -AAYVPVAHDYLDAPEQLDRD---------WVLAQLKPLLEDPNQAKIGQNLKYDASVIA 423

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L +     +EI    K  +  ++I
Sbjct: 424 RYGIEMQGIKYDTMLESYVYNSVVGRHDMDSLALRYLEHKNISFEEIAGKGKGQLTFNQI 483

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ L+L   L PK+   EKLLHV+  ++ P++ V+S+ME TG+ ID 
Sbjct: 484 DLEQAGPYAAEDADITLRLHNALYPKVSADEKLLHVFSDIEMPLVPVLSRMERTGVLIDS 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI++ L  LE+  ++++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 544 MKLSAQSQEIAQRLDELEKRAFEIADQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 604 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 663 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKVLAIDYSQIELRIMAHLSGDKALLDAFC 722

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI G+ +++VS + RR AK INF +IYG+S F LA QL + R EA +Y+
Sbjct: 723 HGKDIHAATAAEILGLPLDQVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRGEAQEYM 782

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+    + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 783 NTYFERYPGVLEYMETTRTVASEQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAM+ V + + +      ++L+Q+HDELVFEV E EI + +Q I   ME A
Sbjct: 843 QGTAADIIKRAMVLVDEWIGQQESGRVRLLMQVHDELVFEVQESEIESVAQEIKTLMESA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL  +I    NW + +
Sbjct: 903 A----QLDVPLIADIGYGENWDQAH 923


>gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 929

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/984 (36%), Positives = 550/984 (55%), Gaps = 71/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YKA+RP +PE L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHQMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P+  L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAVQAEKAGKPVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + ++ 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGLSFRGAKTMAPKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  + L + + +   L       EF + ++ + +       
Sbjct: 241 DVAYLSYQLATIKTDVELELSCDQLTVNELDVDELHRLFSRYEFKRWLSDIESGTWMQGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                V  ++    + +A E                                        
Sbjct: 301 KSSQPVQAVSNAVVEQVAEED--------------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ D Y  I++ K +  WV++L+     +F   TD +D   +  I ++ +    +
Sbjct: 322 -NAPTLSADGYVTILDEKTLLDWVERLKLAEVFAFDTETDGLDTLTANLIGLSFAIKPGE 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+ H   D+  +     ++L+  K   E+E  LKIG N+K+DK V+ 
Sbjct: 381 --------AAYLPLA-HDYLDAP-EQLDRTKVLALFKPLLEDEKLLKIGQNLKFDKGVMQ 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I +RG   D ML SYVLDS    HD+ S+A+++LS+     +EI    K+ +  ++I
Sbjct: 431 RYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V L L   L  KL     L  V++ +D P++ V+S++E TG+ ID 
Sbjct: 491 ALEQAGPYAAEDADVTLHLHQKLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDP 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E++  L  LE   Y+L+GE+FNLSS KQL  IL+ K K P   KT  G   T
Sbjct: 551 AILAEHSKELTIRLAELETQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKTPKGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  A T TGR
Sbjct: 611 NEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH++    L   F 
Sbjct: 670 LSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAFA 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N LDIHR  A+E+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL IPRSE+  Y+
Sbjct: 730 NGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    ++GYV T+ GRR++  +I+S  +  R   ERAAINAP+
Sbjct: 790 NLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AMI++   L+      KM++Q+HDELVFE+ +  I  +   I   ME   
Sbjct: 850 QGTAADIIKKAMIAIDDWLQKDTPKVKMIMQVHDELVFEIHDSVIEESISKIKALMEGCM 909

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL+V+I    NW E +
Sbjct: 910 ----QLNVPLQVDIGTGMNWDEAH 929


>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 928

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/984 (35%), Positives = 543/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
 gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
          Length = 930

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/984 (35%), Positives = 540/984 (54%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V       A 
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELQVQPPAADDLLALFRQYEFKRWTTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                                      + 
Sbjct: 301 GGKPAAKPAVPA---------------------------------------AAAEAEEEV 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + ++ +     
Sbjct: 322 EAATALSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGLSFAVEPGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                + +L+ LK   E+E  LK+G N+KYD+ +L 
Sbjct: 382 -AAYVPVAHDYLDAP---------DQIPRERVLTLLKPLLEDEKVLKVGQNLKYDRGILA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I +RG   D ML SY+LDS    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 432 NYDIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID 
Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDP 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 552 AVLHAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 612 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 EGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V + L   K   +M++Q+HDELVFEV ++E+   S+ I   ME + 
Sbjct: 851 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST 910

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 911 ----TLAVPLLVEVGSGENWDQAH 930


>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
 gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
          Length = 930

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/985 (36%), Positives = 544/985 (55%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 2   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASDR----MAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 57  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 117 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 177 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 237 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDG------ 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                          +   +  +QT   +   +        + +
Sbjct: 291 ------------------------------GTGVVTADEQTKTSSVTVSTAATHAAVIPE 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ +  +  
Sbjct: 321 SPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEG- 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 380 EAAYLPVAHDYLDAPQQLDRD---------WVIAQLKPLLEDESKAKVGQNLKYDASVMA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 431 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 491 ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 551 MLLSAQSQEIALRLDQLEQKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 730 DGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 850 QGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 910 A----ELAVPLVAEAGHGDNWDQAH 930


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/985 (37%), Positives = 540/985 (54%), Gaps = 69/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+ +  G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNRA-GEPTGAMYGVLNMLRSLMLQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    QA G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIEPLHKMVQAVGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAQAAEKAGRHVLISTGDKDMAQLVTPNITLINTMNNTILGPQEVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+L+ I  +  ++        K     +    
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGIGSLKQIYSDLDKVATLSFRGAKTMGAKLELNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  + L L+  +  +L       EF + +    T       
Sbjct: 241 DQADLSYLLATIKTDVELDVTCDDLKLKPMDTAQLHELFSRYEFKRWLEDAETGSWLSGE 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P                                     S  +  +T      E    
Sbjct: 301 KKAPAARK---------------------------------SAKDDTETAVTAVEETTAI 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LSQ     ++Y  +++   +   +  L+     +F   TD++D   +  + ++ +T    
Sbjct: 328 LSQ-----ENYLTVLDDAALDSLIASLKAAKIFAFDTETDSLDVLTTNLVGLSFATAPSV 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D         ++L+ LK   E+ + LK+G N+KYD+ V+ 
Sbjct: 383 -AAYIPVGHDYLDAPDQLDRD---------DVLAKLKPVLEDANLLKVGQNLKYDQGVMA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI ++G   D ML SY LDS    HD+ S+A++ L++     +EI    KS +  ++I
Sbjct: 433 RYGIELQGIAFDTMLESYDLDSVAGRHDMDSLAERHLNHKTITFEEIAGKGKSQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L L P+L  E  L  V+  +D P++ V+S+ME TG+ ID 
Sbjct: 493 ALEQATPYAAEDADVTLQLHLKLWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDS 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L + S E++  L  LE+  ++ +GE FNLSSPKQL  ILF K K P   KT  G   T
Sbjct: 553 NILGKHSQELAIRLDELEKKAHEAAGEPFNLSSPKQLQAILFEKQKLPVVKKTPGGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L +++     +   ILE R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLAELSEQGFELPTIILEHRGLAKLKSTYTDKLPQMINPATGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   K+++ADYSQIELRI+AH++    L   F 
Sbjct: 673 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSGDKGLLTAFA 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL I R EA  Y+
Sbjct: 733 AGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMSAFGLARQLNIARGEAQRYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYVET+ GRR++  EI+S     R   ERAAINAP+
Sbjct: 793 DLYFERYPGVLEYMERTRQQAAEQGYVETLDGRRLYLPEIHSRNGMRRKGAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMISV    L+  +   +M++Q+HDELVFEV E  I    + +   ME+ 
Sbjct: 853 QGTAADIIKRAMISVDAWLLQQKEPLVRMIMQVHDELVFEVHESVIEQTVEKVRELMEQ- 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++    NW + +
Sbjct: 912 ---SLELAVPLKVDVGTGENWDQAH 933


>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 927

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/985 (36%), Positives = 534/985 (54%), Gaps = 75/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NA+ G  NML  ++++   +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRHYASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  EG  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LATQASAEGIPVLISTGDKDMAQLVDENITLINTMTNTVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N   I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLEQLYDNLDSIAALGFRGSKTMAKKLEENK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +   +  L     +   LI     L F   +N +    D    
Sbjct: 241 DDAMLSYQLATIKLDVKLDHDIPSLSKSAPDQDSLIKLYGQLVFKSWLNELLEGGD---- 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                          + FS  SD +S +++              
Sbjct: 297 ------------------------GTIMADGAAFSRGSDTSSDLDT-------------- 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++   +  W+ KL +    +F   TD++D   +  + ++ +  +  
Sbjct: 319 -SAVKIDRSQYEIILDESAMAVWLNKLRSADVIAFDTETDSLDYMEANLVGVSFAIEEGV 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E+    K+G N+KYD  VL 
Sbjct: 378 -AAYVPVAHDYMDAPKQLERD---------WVLEQLKPILEDGSRAKVGQNLKYDASVLA 427

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI MRG   D ML SYV +S    HD+ S+A ++L ++    +++    K  +  ++I
Sbjct: 428 RYGIDMRGIKFDTMLASYVYNSVAGKHDMDSLALRFLQHSCISFEQVAGKGKKQLTFNQI 487

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V  +L   L+  L   +KL  +Y  ++ P++ V+S++E TG+ ID 
Sbjct: 488 DLEQAAPYAAEDADVTFRLHQRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGVLIDD 547

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L +LE+  +D++G++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 548 MKLSAQSQEIALRLDALEQQAFDIAGQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 607

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ + ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 608 NEEVLQELAL-DYPLPEKILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGR 666

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L + F+
Sbjct: 667 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAIDYSQIELRIMAHLSGDRALLEAFQ 726

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+I +V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 727 QGKDIHAATAAEILGVDISQVTAEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQQYM 786

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 787 DTYFERYPGVMQYMEDTRSIAAEQGYVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 846

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V   ++       K+L+Q+HDELVFEV E  +      I + ME+A
Sbjct: 847 QGTAADIIKKAMLLVDDWIQTEGQGRVKLLMQVHDELVFEVEETSLPEIESKIRNLMEQA 906

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL        NW + +
Sbjct: 907 A----QLKVPLVAEAGHGENWDQAH 927


>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
          Length = 933

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/977 (41%), Positives = 585/977 (59%), Gaps = 52/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DG+P+ A++GFCNML + +         +H A
Sbjct: 6   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGMPIGAVSGFCNMLQRYVDGDHGPDAPTHLA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF IP  E++G+EADDIIA
Sbjct: 66  VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRQATEAFNIPCKELEGYEADDIIA 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A K G  VTI+S+DKDLMQLV     + D +K ++ID E V +K+G+ PE++V +
Sbjct: 126 TLACQARKAGGRVTIVSSDKDLMQLVGDGVEMLDAMKNKRIDREGVFEKFGVYPERVVDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRR+ ++E  +   L
Sbjct: 186 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLETLLDRAEEIKQPKRRQTLIEKRDQIEL 245

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L    P+   L+ L L D +  +L+SFL  +EF  L  R+A     +     PV
Sbjct: 246 SKKLVQLDCKTPLDFTLDDLELRDPDPDKLLSFLAEMEFRTLSKRIAEKLGVEP----PV 301

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + D             E   D +                                     
Sbjct: 302 IADAPAPVAADDPPADETPFDAS------------------------------------- 324

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  + +   +++W+ +    G  +    T  ++   +  + I++     +     
Sbjct: 325 ----KYECVRDAAALRKWIDQAHERGWLAVDTETTGLNEMVADLVGISLCIEPGEACYIP 380

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     +  S           E L  LK   E+   LKIG N+KYD  +  RYG+ 
Sbjct: 381 LTHRDGASDDLFGSDALAEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARYGVD 440

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY + +G   H + ++++++L +T    K +L S KS+I  DK+   +  
Sbjct: 441 VAPIDDTMLMSYAMHAGEHGHGMDTLSERYLGHTPIPIKPLLGSGKSAITFDKVPIDEAT 500

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+LW L +P+L   ++  VYE L++P++ V++QME+ GI++D+D+L ++S
Sbjct: 501 AYAAEDADITLRLWKLFKPQLHRVQVTTVYETLERPLVPVLAQMEMHGIKVDRDVLSRMS 560

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ + +LE  I++L+GE FN+ SP QLG+ILF K+    G K KTG++ T A  LE 
Sbjct: 561 NAFAQKMAALEAEIHELAGETFNVGSPAQLGEILFEKMGLEGGKKGKTGKYSTGADVLED 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ + + +L+WRQLSK+KSTY D+L  HIN  T RVHT Y++    TGRLAS +PN
Sbjct: 621 L-ATEHELPRKVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYAITGANTGRLASTDPN 679

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T+ G++IR AF++ P   L+S DYSQIELRILAHIA I  L Q F + LDIH 
Sbjct: 680 LQNIPVRTEEGRRIREAFVAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHA 739

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF RF
Sbjct: 740 MTASEMFDVPLDEMTPEIRRKAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFERF 799

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y++ T  F +++GYV+T+FGR+IH  EIN+ K        RAAINAPIQG+AAD+
Sbjct: 800 PGIRRYMDDTIAFAKEHGYVQTLFGRKIHTPEINA-KGPHAGFARRAAINAPIQGTAADV 858

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAM+ + ++++   L  KMLLQ+HDEL+FEV E+ +    +I    ME A  P + L 
Sbjct: 859 IRRAMVRMPEAID--GLPAKMLLQVHDELLFEVAEDAVDQTIEIARDVMENAPDPAVKLD 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           V L V+     NW E +
Sbjct: 917 VKLTVDAGKGANWAEAH 933


>gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
 gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
          Length = 950

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/990 (41%), Positives = 591/990 (59%), Gaps = 58/990 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K  HL L+DGS+FI+RA++A P L+RK DGLPV A+AGF NM+++ +++++     +H 
Sbjct: 4   TKGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFTNMIFRYIEDAKGADAPTHA 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVIFDY + TFRNEIYP YK NRP  PE L PQ PL R AT+AF +  +EI+G+EADDII
Sbjct: 64  AVIFDYSSKTFRNEIYPAYKENRPPAPEDLRPQFPLTRDATRAFNLACLEIEGYEADDII 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    A + G  VTIIS+DKDLMQLV     + D +K   I  E V  K+G+ P +++ 
Sbjct: 124 ATLARQAREAGGRVTIISSDKDLMQLVGDGVVMLDAMKNIVIGPEEVEAKFGVRPNRVID 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GDS+DN+PG PGIG KTAA L+ +YG+LE +L  A  IKQ KRRE ++ +A+  R
Sbjct: 184 VQALAGDSVDNVPGAPGIGIKTAAQLIADYGDLETLLERAGEIKQPKRRETLVNFADQIR 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S++LV L   VP+   L+ L +++     LI+FL+A+EF  L  RVA  +  +     P
Sbjct: 244 ISKRLVTLEDHVPLDFGLDSLAVKEPEPEALIAFLEAMEFRTLTRRVAEKFGREVPVGAP 303

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                            SD  ++      PQ     + +  +  
Sbjct: 304 APK------------------------------SDAAARWAEGAAPQARLAPQAE--AVA 331

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           PI+   Y +I +   ++ ++   +  G  +    T ++D   ++ + +++ST   +    
Sbjct: 332 PIDTALYQRITDPAALRDFLATAQATGVLAVDTETTSLDEMQAELVGVSLSTGPGR---- 387

Query: 422 FKVETIFIDLSVHTSQD-------STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                 +I L   T  D                E L+ LK   E+E  LKIG N+KYD  
Sbjct: 388 ----ACYIPLGHTTGGDDLFGTTALAPGQMPMDEALAILKPVLEDESLLKIGQNMKYDWK 443

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531
           +  R+GI +  F+D MLMSY + SG   H + ++++++L +     KE++ + K+ I  D
Sbjct: 444 IFARHGIRVAPFDDTMLMSYAMFSGLHGHGMDALSEEYLRHRPIPIKELIGTGKAQITFD 503

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+   +   +A E++ +  +LW   +P+L   ++  VYE L++P++ V+++ME+ G+++D
Sbjct: 504 KVPLDKATAYAAEDAEITYRLWAAFKPQLHRAQVTTVYETLERPLVPVLAEMEMAGVKVD 563

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L ++S   ++ +  LEE I  L+G+ FN+ SPKQLG+ILF KL  P G K KTG + 
Sbjct: 564 PTVLARMSNVFAQRMAGLEEEIQALAGQSFNVGSPKQLGEILFDKLGVPGGEKGKTGAYA 623

Query: 652 TTAQDLEQINC-GDN----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T A  LE I    D+     +   +L+WRQ++K+KSTY D+L  H+N  T RVHT YS+A
Sbjct: 624 TGADVLEDITTMEDHKQAADLAAKVLDWRQIAKLKSTYTDALQTHVNPDTGRVHTSYSIA 683

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRLAS +PNLQNIP+++D G++IR AF++ P  +++S DYSQIELRILAH+A +  
Sbjct: 684 GANTGRLASTDPNLQNIPVRSDEGRRIREAFVATPGHRIVSLDYSQIELRILAHVANLPE 743

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           +   F   +DIH M A+E+FGV +E + P +RR AK INF +IYGIS F LA  LRIPRS
Sbjct: 744 MKAAFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINFGVIYGISGFGLARNLRIPRS 803

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  +I RYF RFPGI  Y+++T  F + NG+V+T+FGR+IH  EIN+ K       +RA
Sbjct: 804 EAQGFIDRYFERFPGIRAYMDETVAFAKANGFVQTLFGRKIHTPEINA-KGPGAGFAKRA 862

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQG+AADI RRAMI +  ++    L  KMLLQ+HDEL+FEV E  +         
Sbjct: 863 AINAPIQGAAADIIRRAMIRMPAAI--AHLPAKMLLQVHDELIFEVAESAVDPLIATARA 920

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME A  P + L VPL V+     +W E +
Sbjct: 921 VMEGAADPAVRLSVPLVVDAGQGASWAEAH 950


>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
 gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
          Length = 934

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 552/985 (56%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMIRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                             ++      T  + ++ SS++  T+  ++   P+         
Sbjct: 292 ------------------LDGGTGIVTADEQTKTSSVTVSTAATHAAAIPE--------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ +  +  
Sbjct: 325 SPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEG- 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLERD---------WVIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDD 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 555 MLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 615 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 674 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 734 DGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINAP+
Sbjct: 794 DKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 854 QGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESA 913

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW++ +
Sbjct: 914 A----ELAVPLVAEAGHGDNWEQAH 934


>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
 gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
          Length = 973

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/975 (41%), Positives = 590/975 (60%), Gaps = 37/975 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKL+++ + ++  +H AVI+
Sbjct: 32  RLFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLMRDMQGDA-PTHLAVIW 90

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   TFRN +Y  YKA+RP  PE L+PQ PLVR AT+AFG+PAIE+ G+EADD+IA Y 
Sbjct: 91  DHSEKTFRNNLYDKYKAHRPPPPEDLIPQFPLVREATRAFGVPAIELPGYEADDLIAAYA 150

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
                 G    I+S+DKDLMQLV     ++D +K  +ID + V +K+G+ P+++V +Q+L
Sbjct: 151 CKVRDMGGEAVIVSSDKDLMQLVGDGVSMFDPMKGLRIDRDQVFEKFGVYPDRVVDVQSL 210

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++EYA+  RLSR+
Sbjct: 211 CGDSVDNVPGAPGIGIKTAAQLINEYGDLDTLLERAGEIKQPKRRETLIEYADQIRLSRQ 270

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D P+  P++ L++ + +   L  FL+ +EF  L  RV                 
Sbjct: 271 LVKLDCDTPLPEPIDDLVVREPDKTVLADFLELMEFRSLARRVG---------------- 314

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                        + +   + +T    + +     +                     I++
Sbjct: 315 -------------DGNASASPRTLDRPAAAPTAPVLGVSYMGAAARAAANPVAEPATIDH 361

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y +I + + +  WV K    G  +F   TD + +  +    ++++    +        
Sbjct: 362 AAYVRIQDLETLNAWVAKATAKGIVAFDTETDALSSATAGLCGVSLAISPGEACYIPVGH 421

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                L++  + D        +E+++ LK   E+   LKI  N KYD  VL RYGI++  
Sbjct: 422 CEKDGLALEAAADLV--QVPMEEVIAALKPLLEDPAVLKIAQNAKYDIAVLARYGINVGP 479

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHA 542
            ED ML+SYVL++G   H +  +++ WL +     K++  S K  I    +  ++   +A
Sbjct: 480 IEDTMLISYVLEAGLHGHGMDELSELWLGHKPISFKQVAGSGKGQISFKHVGLAEATAYA 539

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E+++V L+L+ +L+P+L  E LL VYE L++P+  V++ ME  GI++D D L+++S E 
Sbjct: 540 AEDADVTLRLYNVLKPRLAREGLLTVYETLERPLPAVLAAMENDGIRVDPDTLRRLSNEF 599

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           S  +   E    +L G  FNL SPKQ+GD+LF ++    G KT TGQW T +  LE +  
Sbjct: 600 SMRMADFEARAQELVGRPFNLGSPKQIGDVLFGEMALKGGKKTATGQWSTDSDVLEALAL 659

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-QRVHTFYSLASTMTGRLASLEPNLQ 721
            ++ + + +L+WRQLSK+K TY ++L   I      RVHT Y+LA+T TGRL+S +PNLQ
Sbjct: 660 -EHELPRVLLDWRQLSKLKGTYTENLIAAIAPGGGNRVHTSYALAATTTGRLSSSDPNLQ 718

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T+ G+KIR+AF++ P K LISADYSQIELR+LAHI  I  L + F+  LDIH M 
Sbjct: 719 NIPIRTEEGRKIRKAFVAAPGKVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMT 778

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+E+F V IE +  ++RR AK INF I+YGIS F LA QL IP+ EA  YIK YF RFPG
Sbjct: 779 ASEMFNVPIEGMPSEVRRRAKAINFGIVYGISAFGLANQLSIPQGEAGAYIKTYFERFPG 838

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  Y+E TK FVR++GYV TIFGR+I+  +I     + R   ERAAINAPIQG+AAD+ R
Sbjct: 839 IQAYMEATKAFVREHGYVTTIFGRKINIPDIGGKSVAHRQFAERAAINAPIQGAAADVMR 898

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           RAM+ +  +L+   L+++MLLQ+HDELVFE PE E      +    M+ A  P + + VP
Sbjct: 899 RAMVRMPGALKAAGLSSRMLLQVHDELVFEAPEAEAQATIDVAREVMQGAAAPAVTISVP 958

Query: 962 LKVNIKVSNNWQEEN 976
           L V  + + NW E +
Sbjct: 959 LTVEARAAANWDEAH 973


>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
 gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
          Length = 933

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/985 (37%), Positives = 538/985 (54%), Gaps = 69/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P +   G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLVTPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNTILGPQEVCDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N   I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYGNLDGIAALSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + I    L + + +  +L    K  EF + +  V         
Sbjct: 241 EVAYLSYQLATIKTDVELEITCADLTVAEQDADQLQQLFKHYEFKRWLADVEAGTWLQNK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                    +K+ +   P  +  E  + 
Sbjct: 301 K-------------------------------------GNGAKVANGPKPSSVTAETPKA 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +++  ++ + Y  I+      +W+++L+     +F   TD +D   +  I ++ +     
Sbjct: 324 VAEAKLSQEGYVTILEESTFVEWLERLKKADVFAFDTETDGLDTLTANLIGLSFAIEPGV 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D  V   +           +L  LK   E+E  LK+G N+K+DK +L 
Sbjct: 384 -AAYLPVAHDYLDAPVQLDRAY---------VLETLKPLLEDEKALKVGQNLKFDKSLLA 433

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I +RG   D ML SYVLDS    HD+ S++ ++L +     +EI    K+ +  ++I
Sbjct: 434 RYDIDLRGIAYDTMLESYVLDSVSGRHDMDSLSDRYLDHKTITFEEIAGKGKNQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + PKL      L V+  ++ P++ V+S +E TG+ IDQ
Sbjct: 494 ALEQAAPYAAEDADVTLQLHLAMWPKLKESTGQLKVFNEIEMPLLPVLSHIERTGVLIDQ 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+SK L  LE   ++L+ E FNL+S KQL  IL+ K K P   KT  G   T
Sbjct: 554 HILAAHSKELSKRLGELEIQAHELAEEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+K+TY D LP  IN  + RVHT Y  A T TGR
Sbjct: 614 NEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 673 LSSSDPNLQNIPVRNDEGRRIRQAFIAPAGYRIVAADYSQIELRIMAHLSQDRGLLNAFA 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A E+FG+ ++KV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 733 AGKDIHRATAGEVFGLPLDKVTNEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYV T+ GRR++  ++ S     R   ERAAINAP+
Sbjct: 793 DLYFERYPGVLEYMERTRQQASEQGYVSTLDGRRLYLPDVRSSNGMRRKAAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+   +   +M++Q+HDELVFEV E  +  A   I   ME  
Sbjct: 853 QGTAADIIKRAMIAVDAWLQGQQQPLVRMIMQVHDELVFEVHESAMDDACLRIRSLME-- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV+I V  NW E +
Sbjct: 911 --GSMELAVPLKVDIGVGKNWDEAH 933


>gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
 gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
          Length = 937

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/974 (40%), Positives = 573/974 (58%), Gaps = 50/974 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H AVIF
Sbjct: 11  HLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVAVIF 70

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +GFEADDIIAT  
Sbjct: 71  DKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEQEGFEADDIIATLA 130

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +QAL
Sbjct: 131 CQARDAGGRVTIISSDKDLMQLVGGGVEMLDAMKNKRIDTDGVFEKFGVGPDRVVDVQAL 190

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRR+ ++E      LS++
Sbjct: 191 AGDSVDNVPGAPGIGIKTAALLINEYGSLEDLLNRAEEIKQPKRRQTLIENRAQIELSKQ 250

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  ++ +   L+ L + D +   L+SFL  +EF  L  RVA     +A  I      
Sbjct: 251 LVQLDNNMELDFTLDDLGVRDPDADHLLSFLAEMEFRTLSKRVADQLGKEAPAI------ 304

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                                                 +   Q         ++  P ++
Sbjct: 305 -------------------------------------VDAPAQSTDTAEAATVADMPFDS 327

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            SY  + +   +++WV ++   G  +    T   D      + I++     +        
Sbjct: 328 SSYECVRDAGALKKWVIQIRERGWVAVDTETTGFDEMVVDLVGISLCVEPGRACYIPLTH 387

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                  +  S D        ++ L  LK   E+   LKIG N+KYD  +  R GI +  
Sbjct: 388 KSGSSDDLFGSDDLADGQMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFARRGIDVAP 447

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542
            +D MLMSY + +G+  H + ++++++L++T    K +L + KS+I  D++       +A
Sbjct: 448 IDDTMLMSYAMHAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDAVAYA 507

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E++++ L+LW L +P+L    +  VYE L++P++ V+++ME  GI++D+D L ++S   
Sbjct: 508 AEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDTLSRMSNAF 567

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           ++ +  LE  I++L+G+ FN+ SPKQLG+ILF KL    G K KTG +  T  D+ +   
Sbjct: 568 AQKMAGLEAEIHELAGQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAY-ATGADILEDLA 626

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT Y      TGRLAS +PNLQN
Sbjct: 627 TEHALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGANTGRLASTDPNLQN 686

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IPI+++ G++IR AF+      L++ DYSQIELRILAH+A I  L Q F    DIH + A
Sbjct: 687 IPIRSEEGRRIREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTA 746

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+F V +E+++  +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF RFPGI
Sbjct: 747 SEMFNVPLEEMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFERFPGI 806

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+++T  F +++G+V+T+FGR+IH  EI S K       +RAAINAPIQG+AAD+ RR
Sbjct: 807 RRYMDETVAFAKEHGHVQTLFGRKIHTPEI-SAKGPRAGFAKRAAINAPIQGTAADVIRR 865

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI +  ++    L  +MLLQ+HDEL+FEVPE  +    +     ME A  P ++L V L
Sbjct: 866 AMIRMPAAI--AHLPARMLLQVHDELLFEVPEAAVEDTIETASQVMETAADPAVHLDVKL 923

Query: 963 KVNIKVSNNWQEEN 976
            V+     NW E +
Sbjct: 924 VVDAGRGQNWAEAH 937


>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
 gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
 gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
          Length = 934

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 552/985 (56%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLTFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                             ++      T  + ++ SS++  T+  ++   P+         
Sbjct: 292 ------------------LDGGTGIVTADEQTKTSSVTVSTAATHAAAIPE--------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ +  +  
Sbjct: 325 SPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEG- 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLERD---------WVIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDD 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 555 MLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 615 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 674 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 734 DGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINAP+
Sbjct: 794 DKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 854 QGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESA 913

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW++ +
Sbjct: 914 A----ELAVPLVAEAGHGDNWEQAH 934


>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
 gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
          Length = 934

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/985 (35%), Positives = 544/985 (55%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDRQGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDG------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                          +   +  +QT   +   +        + +
Sbjct: 295 ------------------------------GTGVVTADEQTKTSSVTVSTAASHAAAIPE 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ +  +  
Sbjct: 325 SPAAHIDRSQYQTILNEQDFQHWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEG- 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLDRD---------WVIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDD 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 555 MLLSAQSQEIALRLDQLEQKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 615 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 674 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 734 DGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINAP+
Sbjct: 794 DKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 854 QGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESA 913

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 914 A----ELAVPLVAEAGHGDNWDQAH 934


>gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/984 (36%), Positives = 545/984 (55%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +  E L ++      L+   K  EF +    V +     A 
Sbjct: 241 EVAYLSYKLATIKTDVELELTCEQLEVQQPIAHELLGLFKEYEFKRWTADVESGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------TAKPQETVIIDESPC 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             +  ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 ELKAALSYENYVTILDESTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E++   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDDKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV + ++   S+ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKGDLDAVSKRIHQLMENCT 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL V +    NW + +
Sbjct: 909 ----RIDVPLLVEVGSGENWDQAH 928


>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 929

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/984 (36%), Positives = 552/984 (56%), Gaps = 71/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YKA+RP +PE L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHKMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P+  L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAVQAEKAGKSVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + ++ 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGLSFRGAKTMAPKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L + + +   L       EF + ++ V +       
Sbjct: 241 EVAYLSYQLATIKTDVELELSCDQLTVNELDVDELHRLFSRYEFKRWLSDVESGTWMQGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                V  ++                        S++ +Q  + ++  T           
Sbjct: 301 KSSQPVQAVS------------------------SAVVEQVVEEDNAPT----------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D Y  I++ K +  W+++L+     +F   TD +D   +  I ++ +    +
Sbjct: 326 -----LSTDGYVTILDEKTLLDWIERLKQAEVFAFDTETDGLDTLTANLIGLSFAIKPGE 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+ H   D+  +     ++L+  K   E+E  LKIG N+K+DK V+ 
Sbjct: 381 --------AAYLPLA-HDYLDAP-EQLDRTKVLALFKPLLEDEKLLKIGQNLKFDKGVMQ 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I +RG   D ML SYVLDS    HD+ S+A+++LS+     +EI    K+ +  ++I
Sbjct: 431 RYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V L L   L  KL     L  V++ +D P++ V+S++E TG+ ID 
Sbjct: 491 ALEQAGPYAAEDADVTLHLHQKLWGKLQPHTDLCQVFQTIDMPLVPVLSRIERTGVLIDP 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S  ++  L  LE   Y+L+GE+FNLSS KQL  IL+ K K P   KT  G   T
Sbjct: 551 AILAEHSKRLTIRLAELETQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKTPKGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++  G  P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  A T TGR
Sbjct: 611 NEEVLAELALG-YPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH++    L   F 
Sbjct: 670 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYSIVAADYSQIELRIMAHLSGDKGLLNAFA 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N LDIHR  A+E+FG  ++KV+ + RR AK INF +IYG+S F L+ QL IPRSE+  Y+
Sbjct: 730 NGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    ++GYV T+ GRR++  +I+S  +  R   ERAAINAP+
Sbjct: 790 NLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AMI++   L       KM++Q+HDELVFE+ +  I  +   I   ME   
Sbjct: 850 QGTAADIIKKAMIAIDDWLRKDTPKVKMIMQVHDELVFEIHDSVIEESISKIKVLMEGCM 909

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL+V+I    NW E +
Sbjct: 910 ----QLNVPLQVDIGTGMNWDEAH 929


>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
 gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
          Length = 934

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/985 (37%), Positives = 549/985 (55%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL     +   SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLL----QYTPSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G AV I + DKD+ QLV+P   L +T+    +  + V++K+G+PP  ++   
Sbjct: 121 LALEAEQAGHAVLISTGDKDMAQLVTPGVTLINTMNNAILGPDEVVEKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  +  ++        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGIGGLDALYADLDKVSTLSFRGAKTMAAKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +    L + + +   L       EF + +            
Sbjct: 241 DVAYLSYQLATIKTDVKLDLTCAELTVSEPDADELHKLFGRYEFKRWL------------ 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                              + E     + K S   + +       +E T     +E  Q 
Sbjct: 289 ------------------ADVESGTWLSGKKSAGKAPAAAKKSAQAEDTTSAAVIEPNQ- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D Y  I++   + +W+  L+     +F   TD +D   +  I ++ +T   K
Sbjct: 330 -----LSQDGYVTILDQATLDEWIGYLKGSEVFAFDTETDGLDTLTANLIGLSFATEAGK 384

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D  V   +D         E+L  LK   E+E  LK+G N+K+D+ VL 
Sbjct: 385 -AAYLPVAHDYLDAPVQLDRD---------EVLKQLKPILEDEKQLKVGQNLKFDRGVLL 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I ++G   D ML SYVLDS    HD+ S+A ++L +     +EI    K+ +  ++I
Sbjct: 435 RYDIELKGIAFDTMLESYVLDSVSGRHDMDSLADRYLGHKTVSFEEIAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL   L P++   E L  V+  ++ P++ V+S +E TG+ IDQ
Sbjct: 495 ALEQAAPYAAEDADVTLQLHQALWPRIAESESLKTVFTDIEMPLVPVLSHIERTGVLIDQ 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L   S E++  L  LE   ++L+ E FNLSS KQL  IL+ K K P   KT  G   T
Sbjct: 555 NILAAHSKELAIRLNELENKAHELAEEPFNLSSTKQLQAILYEKQKLPILKKTPGGAPST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN ++ RVHT Y  A T TGR
Sbjct: 615 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPQSGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH++K   L + F 
Sbjct: 674 LSSSDPNLQNIPVRNDEGRRIRQAFIAPKDYIILAADYSQIELRIMAHLSKDEGLLKAFA 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG  +EKVS + RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 734 EGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQRYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+    + GYVET+ GRR++  +I S  +  R   ERAAINAP+
Sbjct: 794 DLYFERYPGVLEYMERTRTQASEQGYVETLDGRRLYLPDIKSSNAMRRKGAERAAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMISV   L+       ++++Q+HDELVFEV ++++  AS+ I + ME  
Sbjct: 854 QGTAADIIKRAMISVADWLKQPDAPRARIIMQVHDELVFEVHKDDVEVASEKIRNLMEA- 912

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPLKV++    NW + +
Sbjct: 913 ---SMTLAVPLKVDVGTGENWDQAH 934


>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
 gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
          Length = 934

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 552/985 (56%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                             ++      T  + ++ SS++  T+  ++   P+         
Sbjct: 292 ------------------LDGGTGIVTADEQTKTSSVTVSTAATHAAAIPE--------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ +  +  
Sbjct: 325 SPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEG- 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLERD---------WVIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++    K+ +  ++I
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDD 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 555 MLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 615 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 674 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 734 DGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINAP+
Sbjct: 794 DKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 854 QGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESA 913

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW++ +
Sbjct: 914 A----ELAVPLVAEAGHGDNWEQAH 934


>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
 gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
          Length = 931

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 536/985 (54%), Gaps = 71/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPETMSNGD-IPTNAVYGVVNMLRSMMRQFSSDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A + G  V I + DKD+ QLV     L +T+    +D + V++K+GIPPE ++   
Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G+LE +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTAKALLQGIGSLEKLYENLDDIAPLGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +         
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKNEPNKDELIKLYGQLVFKSWLNELLDGG----- 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                             SS+ +   K  +  +  K        
Sbjct: 296 ----------------------------------SSVVEADEKSGAAVSSAKSTSTVEMD 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 322 TSAVTIDRSQYETILDEATFNTWLEKLKAADVFAFDTETDSLDYMVANLVGLSFATEEGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E++   K+G N+KYD  VL 
Sbjct: 382 -AAYVPVAHDYLDAPQQLDRD---------WVLAQLKPILEDDTQAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 432 RYNIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +   E+L  +YE ++ P++ V+S++E TG+ ID 
Sbjct: 492 ELDQASPYAAEDADVTLRLHNRLMANIEKDEQLKAIYEEIEVPLVPVLSRIERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI++ L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 552 MKLAAQSQEIAQRLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ D G++IR+AFI+P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 671 LSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQ 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G  I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY+
Sbjct: 731 QGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 791 NTYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  +T     +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVQESALTEIESKVQQLMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 911 AA----LDVPLVAEAGHGDNWDQAH 931


>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
 gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
          Length = 932

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/985 (36%), Positives = 540/985 (54%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LASQASKAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G++E +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A +S +L  ++ DV +    E L+    N   LI     L F   +N +         
Sbjct: 241 DNAEMSYQLATIKLDVELEETPESLVKTQPNTDELIKLYGQLVFKSWLNEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                 ++  T +  +   S + ++S  ++  T +         
Sbjct: 292 ----------------------LEGGTGVVEADEKSGAARSSGTSATSTVEM-------N 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++ +    W++KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 323 TSAVTIDRSKYETILDEETFNAWLEKLKAAEVFAFDTETDSLDYMVANLVGLSFATEEGV 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 383 -AAYVPVAHDYLDAPQQLDRD---------WVLEQLKPILEDDAQAKVGQNLKYDMSVLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 433 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +YE ++ P+I V+S++E TG+ +D 
Sbjct: 493 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKAIYEEIEVPLIPVMSRIERTGVFVDD 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 553 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGSPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++    K+++ DYSQIELRI+AH++    L + F+
Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GVNIE V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 QGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + G+VETI+GRR+H  EI S     R   ERAAINAP+
Sbjct: 792 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 852 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESSLAEIESKVQELMESA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 912 A----ELEVPLVAEAGHGDNWDQAH 932


>gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2]
 gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2]
          Length = 1008

 Score =  989 bits (2557), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/990 (44%), Positives = 651/990 (65%), Gaps = 24/990 (2%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGS +I+RA++A P L+RK DGL VNA+ GFCNMLWKL+++   ++  +H A
Sbjct: 27   KGDHVFLVDGSGYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLMRDMPPDNRPTHLA 86

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            ++FD   VTFRN+IYP+YKA+RP  P+ L+PQ  L+R A +AF +P +E  GFEADD+IA
Sbjct: 87   IVFDKSEVTFRNKIYPEYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQGGFEADDLIA 146

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A + G   TI+S+DKDLMQLV+    +YDT+K+ ++ I  VI+K+G+PPEK+V +
Sbjct: 147  TYVRQACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRLGIPEVIEKFGVPPEKVVEV 206

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  IKQ KRRE+++E+A  AR+
Sbjct: 207  QALAGDSVDNVPGVPGIGIKTAAQLITEYGDLETLLQRAGEIKQPKRRESLIEHAAKARI 266

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP- 301
            SR+LV+L  +V + +PL+ L + + +  +LI+FLKA+EF+ L  RVA     DAA++ P 
Sbjct: 267  SRELVLLDNNVKLDVPLDELAVHEPDSRKLIAFLKAMEFSTLTRRVAEYAQIDAADVSPD 326

Query: 302  ----VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                  L     ++    +    + D   K +  +S +   +   +  +PQ L   R++K
Sbjct: 327  EHLKSPLATVVGQDSPQTLPLGGEPDARAKGTSATSATSAGAAPATAHSPQALAAVRIEK 386

Query: 358  LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             +   I+   Y  I    ++  W+ +   +G  +  I   ++D   +    IA++    K
Sbjct: 387  AATGKIDRGKYQTIRTLDELNAWITRAHDLGHVAIDIKATSIDPMQADICGIALALTPNK 446

Query: 418  DDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIGHNI 469
                      +I L    S                   +    L+K  E+E  LK G +I
Sbjct: 447  --------ACYIPLGHKKSGGGEDLFASGLAEGQIEAAKAFDVLRKLMESEAVLKSGLDI 498

Query: 470  KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
            K+  ++L ++ I++R  +D+ LMSY LD+GR +HDI S+AQKWL++      +++ S ++
Sbjct: 499  KFISVMLAQHKITLRTTDDVQLMSYALDAGRGAHDIESLAQKWLAHAAIKHGDVIGSGRN 558

Query: 527  SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
             + +D+++  +  E+  E +++I++LWLL++ +LI E++ +VYE L++P+I V+++ME  
Sbjct: 559  KLSLDQVTIERATEYGAETADIIIRLWLLMKARLISERMNNVYESLERPLIGVLARMERR 618

Query: 587  GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
            GI ID+ +L ++S + ++    LE+ I  ++GE  N  SPKQLGD++F K+  P G KTK
Sbjct: 619  GIMIDRQVLSRLSGDFAQTASRLEDEIRKIAGEDINPGSPKQLGDVIFGKMGLPGGQKTK 678

Query: 647  TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            TG W T+A  LE +    +   + IL+WRQ+SK+KSTY D+LPN++N +TQRVHT Y+LA
Sbjct: 679  TGAWSTSASILEDLAEEGHVFPRKILDWRQVSKLKSTYTDALPNYVNPQTQRVHTTYALA 738

Query: 707  STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            +T TGRL+S EPNLQNIP++T+ G+KIRRAFI+    KL+SADYSQIELR+LA IA I  
Sbjct: 739  ATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAEKGHKLVSADYSQIELRLLAEIADIPV 798

Query: 767  LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            L Q F + LDIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F LA QL IPR 
Sbjct: 799  LKQAFHDKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYGISAFGLANQLGIPRE 858

Query: 827  EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            EA  YIK+YF RFPGI  Y++ T++F R++GYVET+FGR+ HY +I +  +S+R  NERA
Sbjct: 859  EAGAYIKKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCHYPDIKASNASLRAFNERA 918

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            AINA +QG+AADI RRAMI +  +L + KLA +MLLQ+HDELVFEVP+ E+     +I  
Sbjct: 919  AINARLQGTAADIIRRAMIRMEDALAEKKLAARMLLQVHDELVFEVPDSEVGDTIPVIQE 978

Query: 947  SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             ME A  P   L VPL V+ + ++NW E +
Sbjct: 979  VMENAAFPAARLSVPLHVDARAAHNWDEAH 1008


>gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886]
 gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886]
          Length = 931

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/987 (36%), Positives = 538/987 (54%), Gaps = 71/987 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             +N L LVDGSS++YRA++A+P L+    G P  A+ G  NML  L+    K+   SH 
Sbjct: 4   TPDNPLILVDGSSYLYRAYHASPNLTNAK-GEPTGAVYGVVNMLRSLV----KQYPQSHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVIFD    TFR+++Y +YKA+RP +P+ L  Q+  +    +A G P + I+G EADD+I
Sbjct: 59  AVIFDAKGKTFRDDMYAEYKAHRPPMPDDLRSQIAPLHEIIEAMGFPMLVIEGVEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T      K G  + I + DKD+ QLV     L +T+    +  + V  K+G  PE ++ 
Sbjct: 119 GTLAVQGSKAGMPILISTGDKDMAQLVDDNITLINTMTNVIMTPQGVHDKYGFGPEHIID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILE 235
             AL GD +DNIPG+PG+G KTA  L+   G L++I  N  +I        K   + + E
Sbjct: 179 YLALMGDKVDNIPGVPGVGEKTATALIAGIGGLDDIYANLDKIADLGFRGSKTMAKKLEE 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++ D  +    E L   + +  +L++    L F + +          
Sbjct: 239 NKENAYLSYQLATIKLDCELPFKPEELTNREPDNEKLVALFTELNFKRWLAE-------- 290

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                            +  + ++  + K  S  T  K      
Sbjct: 291 -------------------------------AQNGGAGVTALSEKAASGTTATKSAENAE 319

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                  I+   Y  I+  +  Q+W++KL+     +F   TD++D   +  + I+ +  +
Sbjct: 320 VVFKAAIIDRSQYDTILTEEAFQRWMEKLKNADVVAFDTETDSLDYMEANLVGISFAVAE 379

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ L+ H   D+  K      +L+ +K + E+   LK+G N+KYD  V
Sbjct: 380 GE--------AAYLPLA-HDYLDAP-KQLDRDWVLAEMKLWLEDAGALKVGQNLKYDASV 429

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
           L RY I+MRG   D ML SYV +S    HD+ S+A ++L +     +EI    K  +  +
Sbjct: 430 LARYDIAMRGIAYDTMLESYVFNSVAGKHDMDSLALRYLQHQCISFEEIAGKGKKQLTFN 489

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q   +A E+++V L+L   L  +L   EKL  ++E+ + P++ V+S+ME  G+ I
Sbjct: 490 QIELDQAAPYAAEDADVTLRLHNALMAQLNNDEKLKVIFEQYEMPLVPVLSRMERHGVLI 549

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
             ++L + S EI+  L +LE+ +++L+GE+FNLSSPKQL  ILF K+  P   KT +G  
Sbjct: 550 SAEMLAKQSQEIAVRLDTLEKEVFELAGEEFNLSSPKQLQAILFEKMGLPVVKKTPSGTP 609

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++   D P+ K ILE+R L+K+KSTY D LP  +   T RVHT Y  A T T
Sbjct: 610 STNEEVLQELAL-DYPLPKRILEYRGLAKLKSTYTDKLPKMVKPATGRVHTSYHQAVTAT 668

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+ + G++IR+AFI+P  K +++ DYSQIELRI+AH++    L   
Sbjct: 669 GRLSSTDPNLQNIPIRNEEGRRIRQAFIAPAGKTILAVDYSQIELRIMAHLSGDEALIDA 728

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH   AAE+ G++I  V+P+MRR AK INF +IYG+S F LA QL IPR EA  
Sbjct: 729 FRHGKDIHAATAAEVMGIDISDVTPEMRRRAKAINFGLIYGMSAFGLAKQLGIPRGEAQQ 788

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ RYF R+PG+ +Y+E T+    + GYVETIFGRR+H  EI S  +  R   ERAAINA
Sbjct: 789 YMDRYFERYPGVRQYMENTRLQAAEQGYVETIFGRRLHLPEIKSSNAMRRKGAERAAINA 848

Query: 891 PIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI +RAMI V   ++   +    +++Q+HDELV EV  E +    Q +   ME
Sbjct: 849 PMQGTAADIIKRAMILVDAWIQQQPEGRVALIMQVHDELVLEVDTEHLAEVEQQVCKLME 908

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A L    L VPL  +     NW + +
Sbjct: 909 SAAL----LDVPLVADSGSGANWDQAH 931


>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
 gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
          Length = 927

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/984 (36%), Positives = 548/984 (55%), Gaps = 73/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G AV I + DKD+ QLV+P   L +T+    +  E V  K+G+PPE ++   
Sbjct: 121 LAKEAAAAGRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAELSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L ++      L++  +  EF +  + V       + 
Sbjct: 241 EVAYLSYQLATIKTDVELELSHDRLEVQQPQADELLALFRQYEFKRWTSDVEAGKWLQS- 299

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         K  A  TE          +  +LS +                    
Sbjct: 300 ------------RGKPAAKPTETIVVEAEPEEEAVALSSE-------------------- 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++ + +Q W+++++     +    TD++D   +  + I+ +T    
Sbjct: 328 ---------RYVTILDEETLQAWIERIKNAPVVAVDTETDSLDNLTANLVGISFATEPGL 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+D          +L  LK   E+E  +K+G N+K+D+ +L 
Sbjct: 379 -AAYIPVAHDYLDAPDQLSRD---------RVLELLKPLLEDESLVKVGQNLKFDRGILQ 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+LDS    HD+ S++ +WL +T    ++I    K+ +  ++I
Sbjct: 429 NYGIELRGIAFDTMLESYILDSVSGRHDMDSLSSRWLKHTTITFEQIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V LQL L + PKL   K  L+++E ++ P++ V+S++E  G++ID 
Sbjct: 489 DLEQAGRYAAEDADVTLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDP 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI+  L  LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 AVLHAHSQEIALKLTELEQKAHEIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K IL++R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 609 SEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E VS + RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 728 EGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +IN+  ++ R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLEYMERTRKQAKEQGYVETLDGRRLYLPDINASNAARRAGAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   KM++Q+HDELVFEV ++++   SQ I   ME   
Sbjct: 848 QGTAADIIKRAMIAVDGWLQKEQPRVKMIMQVHDELVFEVHKDDVEAVSQKIHELMEN-- 905

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              + L VPL V +    NW E +
Sbjct: 906 --SMQLDVPLLVEVGSGVNWDEAH 927


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/983 (41%), Positives = 584/983 (59%), Gaps = 64/983 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    H+ L+DGS FI+RAF+  P ++R  DG PVNA+ GF  ML KLL +S+ +    H
Sbjct: 1   MTAPRHVTLIDGSGFIFRAFHGLPPMTR-PDGTPVNAVYGFTTMLMKLLADSQSD----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD    TFR+EIYP+YKA+RP  P+ L+PQ PLVR AT+AF +PAIE++GFEADD+
Sbjct: 56  VAVIFDSSRKTFRSEIYPEYKAHRPPAPDELVPQFPLVREATRAFDLPAIELEGFEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IATY  +A + G +VTI+S+DKDLMQLV P   +YD +K   I    V +K+G+ P+K+V
Sbjct: 116 IATYARLAVEAGASVTIVSSDKDLMQLVGPGVDMYDPMKNRAIGEAEVREKFGVAPDKVV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GDS DN+PG+PGIG KTAA L++EYG+L+ +L  AS IKQ KRRE+++E+AE A
Sbjct: 176 DVQALCGDSSDNVPGVPGIGVKTAAQLIEEYGDLDTLLARASEIKQPKRRESLIEHAELA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+SR+LV LRTD P+ +PL  L ++     +L +F  A  F  L+ R+       A    
Sbjct: 236 RISRQLVRLRTDAPVPVPLADLDVKPPAPEKLAAFCAAQGFRSLMGRLNAKIPTTAPT-- 293

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                                        T   +     +  S 
Sbjct: 294 --------------------------------------------ATRAIVDTASAEAPSL 309

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P     Y  + +   + +WV +    G   F   T  +D   +K + ++++    +   
Sbjct: 310 PPKVESDYELVTDLAALDRWVAQASKAGLVGFDTETTGLDPLRAKLVGVSLALAPGRACY 369

Query: 421 SFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              + +      DL    S D+  K     +IL+ LK    +   LK+GHNIKYD  V+ 
Sbjct: 370 IPVMHSSGEAQGDLLGGPSADAP-KLIPAADILARLKPLLADPAVLKVGHNIKYDMQVMA 428

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
             G++++ F+D ML+SYVLD     H +  +    L +      E+  S ++ +  D++ 
Sbjct: 429 GLGLAIQSFDDTMLLSYVLDGASHGHGLDELCLLHLGHRNISFAEVCGSGRNQVTFDRVP 488

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E++++ L+L  LL+P+L++E+++ VYE L++P++ V++ ME  GI++D+  
Sbjct: 489 LDKACAYAAEDADMTLRLHGLLKPRLLLERMVSVYETLERPLVPVIAAMERDGIKVDRPQ 548

Query: 595 LKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           L  +S +  + L  LE  +  L+ GE FNL SP+QLG +LF  L  P G KTKTGQW T 
Sbjct: 549 LMALSEDFGRRLTELETEVVALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATG 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  LE +    +P+   +L+WRQLSK+K TY D+L   IN  T RVHT Y+LA+T TGRL
Sbjct: 609 ADVLEDL-AHLHPLPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYALAATTTGRL 667

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T+ G+KIR AF++ P K+LISADYSQIELR++AH+A+I  L   F +
Sbjct: 668 SSSDPNLQNIPIRTEEGRKIRHAFVAEPGKRLISADYSQIELRLVAHVAEIEGLRDAFAD 727

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH + A+++FGV ++ +   +RR AK INF IIYGISPF LA QL IP+ EA  YI+
Sbjct: 728 GADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGISPFGLAAQLGIPQGEAKAYIE 787

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P I  ++E+TK   R+ G+V T+FGR++    I     ++R   ERAAIN PIQ
Sbjct: 788 AYFARYPEIRTFMERTKEEAREKGFVTTLFGRKVFTPGIKDKNGAMRAFAERAAINGPIQ 847

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G AADI +RAMI +  +L    L  ++LLQ+HDELV E PE+E     +++   ME A  
Sbjct: 848 GGAADIIKRAMIRLPAALVAEGLKARLLLQVHDELVLEAPEDETEATVRVVKRVMEAAA- 906

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V   ++++W   +
Sbjct: 907 ---TLSVPLLVEAGIADSWDAAH 926


>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891]
 gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891]
          Length = 931

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 541/985 (54%), Gaps = 71/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L+ +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLDKLYENLDDIAPLGFRGSKTMAKKLIDNQ 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++ DV +    E L+  + N   LI     L F   +N +    +    
Sbjct: 241 DNAKLSYELATIKLDVALEETPESLLKAEPNKDELIKLYGQLVFKSWLNELLDGGNG--- 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                             +E +         S+ SS ++  +                  
Sbjct: 298 -----------------VVEADEKSGGAAGASKASSGAEMDT------------------ 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 323 -SAVTIDRSHYDTILDEASFNAWLEKLKAAEVFAFDTETDSLDYMVANLVGLSFATEEGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 382 -AAYVPVAHDYLDAPAQLERD---------WVLEQLKPILEDDAQAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 432 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S++E TG+ ID 
Sbjct: 492 ELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI++ L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 552 MKLGAQSQEIAQRLDELEQQAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+P   K+++ DYSQIELRI+AH++    L + F+
Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLEAFQ 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G  I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY+
Sbjct: 731 QGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + GYVETI+GRR+H  EI S     R   ERAAINAP+
Sbjct: 791 NKYFERYPGVMQYMEDTRSTASEQGYVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  +T     +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDEWIQTEGDGRVKLLMQVHDELVFEVQESALTEIESKVQELMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 911 A----ELDVPLVAEAGHGDNWDQAH 931


>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 930

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/984 (37%), Positives = 558/984 (56%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIIQYK----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +     A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVAAMGLPILVISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEKEG +V I + DKD+ QLV+P   L +T+    +  E VI+K+G+P E ++   
Sbjct: 121 LALQAEKEGRSVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVIEKYGVPSELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ I      I        K     + ++ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGGLDAIYARLDDIATLSFRGAKTLGGKMEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV +      L +   +   L++     EF + IN V      +  
Sbjct: 241 EVAYLSYQLATIKTDVELDKHCIELSVVPPDADELLALFSHYEFKRWINDVQNGTWLEGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +                        T+  S   +L+   S                  
Sbjct: 301 GQK------------------------TVSGSAKPALAVPNS------------------ 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+ +SY  I+  + ++ W++KL+   + SF   TD +D   +  + ++ +    +
Sbjct: 319 -TTVKISPESYQTILERQSLEAWIEKLKHAPAFSFDTETDGLDTLTANLVGMSFAIAAGE 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            +    VE  ++ L+ H   D+  +     E+L+ LK   E+ +  KIG N+K+D+ VL 
Sbjct: 378 SE----VEAAYLPLA-HDYLDAP-QQLDLHEVLTALKPLLEDANLPKIGQNLKFDRGVLA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY + + G   D ML SYVL+S    HD+ S+A++ LSY     ++I    K  +  ++I
Sbjct: 432 RYDVVLEGIVFDTMLESYVLNSVAGRHDMDSLAERHLSYKTTTFEDIAGKGKKQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +  ++A E+++V L+L   + P+L   E L  V+++++ P++ V+S+ME TG+ ID 
Sbjct: 492 PLEEAAKYAAEDADVTLRLHQAMYPQLASAEVLKKVFQKIEMPLVPVLSRMERTGVLIDA 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L + S EI+  L  LE++ Y L+ E+FNL+SPKQL  ILF K+K P   KT  G   T
Sbjct: 552 RTLAEHSREITVRLDELEKSAYALADEEFNLASPKQLQVILFEKMKLPVLKKTPNGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE++   ++ + + ILE R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 612 NEEVLEEL-AENHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTNRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSRDPNLQNIPVRNEEGRRIRQAFIAPTGYRIMAADYSQIELRIMAHLSQDKGLLAAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FGV +E V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 731 QGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQRYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    ++G+VET+ GRR++  EI S  +  R  +ER AINAP+
Sbjct: 791 DLYFERYPGVLNYMERTRQQAAEHGFVETLEGRRLYLPEIKSRNAMRRKASEREAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI+V   +   K   +M++Q+HDELVFEV E E+  A Q I   ME++ 
Sbjct: 851 QGTAADIIKLAMIAVDDWIVSEKPNVRMIMQVHDELVFEVHESELAMAEQKIRALMEQSM 910

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
           L    L VPLKV++ + +NW + +
Sbjct: 911 L----LDVPLKVDVGIGDNWDQAH 930


>gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
 gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
          Length = 1003

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/981 (44%), Positives = 635/981 (64%), Gaps = 7/981 (0%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            K +H+FLVDGS +I+RA++A P L+RK DGL +NA+ GFCNMLWKL+++   E   +H A
Sbjct: 23   KGDHVFLVDGSGYIFRAYHALPPLNRKSDGLQINAVLGFCNMLWKLMRDMPPEDRPTHLA 82

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            ++FD   VTFRN IY DYKA+RP  P+ L+PQ  L+R A  AF +P +E  GFEADD+IA
Sbjct: 83   IVFDKSEVTFRNTIYSDYKAHRPPAPDDLIPQFALIREAVHAFDLPCLEQGGFEADDLIA 142

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            TY   A   G + TI+S+DKDLMQLV+    +YDT+K+ ++ +  VI+K+G+PP+K+V +
Sbjct: 143  TYVREACARGASATIVSSDKDLMQLVTDCVTMYDTMKDRRLGVPEVIEKFGVPPDKVVEV 202

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A+ IKQ KRRE ++  AE AR+
Sbjct: 203  QALAGDSVDNVPGVPGIGVKTAAQLITEYGDLETLLSRATEIKQPKRREALIANAEKARI 262

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
            SR+LV+L   V + +PL+ L + + +  +LISFLKA+EF+ L  RVA   + DA+++ P 
Sbjct: 263  SRQLVLLDDKVKLDVPLDELAIHEPDYRKLISFLKAMEFSTLTRRVADYAEIDASSVMPD 322

Query: 303  V-LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ---TPQKLFLERLQKL 358
              L          A    +       T    ++S       +     +PQ L   R + +
Sbjct: 323  ERLKSAFAGGPSEASPQTLPLGGEPDTRARGTVSTAPVTTLAAAPVFSPQALAASRAKDV 382

Query: 359  SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            +   ++   Y  I    ++  WV +   +G  +  I   + D   +    IA++    + 
Sbjct: 383  AAAKVDRTKYATIRTADELAAWVTRAHDLGHVAIAIKATSFDPMQADICGIALALSPNEA 442

Query: 419  DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                             +           ++L  L    E+E  LK G +IK+  ++L +
Sbjct: 443  AYIPLGHKKAGGGDDLFASGLADGQIEAAKVLETLTALLESEAVLKTGFDIKFAAVLLAQ 502

Query: 479  YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
            + I++R  +D+ LMSY LD+GRSSHDI ++A++WL +      +I+ S ++ I +D++  
Sbjct: 503  HNITLRTVDDVQLMSYALDAGRSSHDIEALAEQWLGHEMIAHADIVGSGRNRISLDQVEI 562

Query: 536  SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             +  E+  E+++VI++LWL+ + +LI E++ +VYE L++P+IDV+++ME  GI ID+ +L
Sbjct: 563  PRAAEYGAESADVIMRLWLVFKARLISERMNNVYESLERPLIDVLARMERRGIMIDRQVL 622

Query: 596  KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             ++S E +++   LE  I +++GE  N  SPKQLGD++F K+  P G KTKTG W TTA 
Sbjct: 623  ARLSGEFAQSAARLEAEIREIAGEDINPGSPKQLGDVMFGKMGLPGGQKTKTGAWSTTAS 682

Query: 656  DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             LE +    +   + IL+WRQ+SK+KSTY D+LP H+  +TQRVHT Y+LA+T TGRL+S
Sbjct: 683  ILEDLAEAGHDFPRKILDWRQVSKLKSTYTDALPTHLLPQTQRVHTTYALAATTTGRLSS 742

Query: 716  LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             EPNLQNIP++T+ G+KIRRAFI+    KL+SADYSQIELR+LA IA I  L Q F++ L
Sbjct: 743  NEPNLQNIPVRTEDGRKIRRAFIAAKGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGL 802

Query: 776  DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
            DIH M A+E+FGV I+ +  ++RR AK INF IIYGIS F LA QL IPR EA  YIK+Y
Sbjct: 803  DIHAMTASEMFGVPIKDMPGEVRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYIKKY 862

Query: 836  FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
            F RFPGI  Y++ T++F R++GYV T+FGR+ HY +I +   S+R  NERAAINA +QG+
Sbjct: 863  FERFPGIRAYMDATRDFCREHGYVTTLFGRKCHYPDIKASNPSLRAFNERAAINARLQGT 922

Query: 896  AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
            AADI RRAMI +  +L   KLA +MLLQ+HDELVFEVP+ E+     +I   ME+A  P 
Sbjct: 923  AADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVPDSEVDKTLPVIREVMEQAPFPA 982

Query: 956  INLRVPLKVNIKVSNNWQEEN 976
              L VPL+V+ + ++NW E +
Sbjct: 983  TALSVPLRVDARAADNWDEAH 1003


>gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
 gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
          Length = 1024

 Score =  988 bits (2554), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1010 (41%), Positives = 610/1010 (60%), Gaps = 47/1010 (4%)

Query: 5    NHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            + + LVDGSSFI+RA++ +         R  DGLP  A+  FC  + + +Q        S
Sbjct: 24   DQVLLVDGSSFIFRAYFQSINQPERYNFRPSDGLPTGAVRLFCAKIAQFVQEGAAGVKPS 83

Query: 60   HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            H  ++FD    +FR EI+PDYK +RP  PE L  Q+PL+R A +AFG+  IE++ +EADD
Sbjct: 84   HLGIVFDKSEGSFRKEIFPDYKGHRPDAPEDLKRQMPLMREAVRAFGLEPIELERYEADD 143

Query: 120  IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHVI 169
            +IATY   AE  G  V I+S+DKDLMQLV      YD             E  +D   ++
Sbjct: 144  LIATYARQAEARGAGVIIVSSDKDLMQLVGDLVRFYDFESGQQGKPGYRPERNLDAAAIV 203

Query: 170  KKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            ++W G+ P ++    AL GD+ DN+PG+PGIG KTAA+L++E+G+LE +L  A+ IKQ K
Sbjct: 204  ERWEGLSPAQIGDALALIGDTSDNVPGVPGIGLKTAAVLIKEFGSLEALLERAAEIKQPK 263

Query: 229  RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            RRE +L   E ARLSR+LV L   VP+ +PLE L L   +  RL+ FLKA+EF  L  R+
Sbjct: 264  RRETLLANIEQARLSRRLVTLDEAVPVPVPLEALRLRKPDPDRLVGFLKAMEFNTLTRRI 323

Query: 289  ATTYDCDAANIEPVVL-----DINTTENKGIAIETEIDRDTT-----IKTSQFSSLSDQT 338
            A+    D   ++P          +    KG +  T    D        +   F+ L    
Sbjct: 324  ASLLHVDPEAVKPDPALLPGGAASYANEKGGSDVTPFFGDEARDQPAAEVDPFADLGLPD 383

Query: 339  SKINS----EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
            + +      E TP  L   R  + +  P + D+Y  I +   +  WV +    G  +   
Sbjct: 384  APLKPRGPVEATPGSLVAARAAE-AVKPFDTDAYETITSLDRLDAWVAEAAEAGVLAVDT 442

Query: 395  ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT-----KEI 449
             T+ +DA  +  + ++++T   +          +I LS   S+D  G+  L      + +
Sbjct: 443  ETNALDAHRADLVGVSLATAPGR--------AAYIPLSHRGSEDLFGEGLLPNQLPWEAV 494

Query: 450  LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             + LK   E+   LK+G N+KYD LVL R+GI +R ++D ML+SYVLD+G+ SH +  +A
Sbjct: 495  RARLKPLLEDPAVLKVGQNLKYDWLVLARHGIEVRPYDDTMLISYVLDAGKGSHGMDELA 554

Query: 510  QKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            ++ L +      ++  + ++ +  D++   +   +A E+++V L+LW L++P+L  E+  
Sbjct: 555  RRHLGHQPITFADVTGTGRTKVTFDRVPLDKATAYAAEDADVTLRLWRLMKPRLAAERRA 614

Query: 567  HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
             VYE L++P++ V+++ME  GI++D+ +L ++S + S++L  LE  I +++GE F++SSP
Sbjct: 615  TVYETLERPLVPVLARMESCGIRVDRGMLSRLSGDFSQSLARLEAEIQEMAGESFSVSSP 674

Query: 627  KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
            KQ+GDILF K   P   KT +GQW T A  LE++    + + K ILEWRQLSK+KSTY D
Sbjct: 675  KQIGDILFGKFGLPGAKKTPSGQWATPATLLEELAGQGHALPKKILEWRQLSKLKSTYTD 734

Query: 687  SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            +L  H ++ T RVHT ++LA+T TGRL+S +PNLQNIPI+T+ G++IR+AF++    KLI
Sbjct: 735  TLQEHADRETNRVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADEGHKLI 794

Query: 747  SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            SADYSQIELR+LAHIA I  L + F   +DIH   A+ +FGV +++++P +RR AKTINF
Sbjct: 795  SADYSQIELRLLAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINF 854

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
             IIYGIS F LA +L IP+ EAA +IK+YF RFPGI  YI+  K   R  GYV T+FGR 
Sbjct: 855  GIIYGISAFGLADRLGIPQGEAAAFIKQYFERFPGIRAYIDDIKKTCRDKGYVTTLFGRV 914

Query: 867  IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
             HY +I S     R   ER AINAPIQGSAADI RRAM+ +  +L    L T+MLLQ+HD
Sbjct: 915  CHYPQIRSNNPQERASVERQAINAPIQGSAADIIRRAMVRMEGALAAAGLTTRMLLQVHD 974

Query: 927  ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ELVFE P++E+  A  II   ME+A  P + LRVPL V  K + NWQE +
Sbjct: 975  ELVFEAPDDEVERALPIIARVMEEAPHPAVQLRVPLAVEAKAATNWQEAH 1024


>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
 gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score =  987 bits (2552), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/985 (36%), Positives = 537/985 (54%), Gaps = 73/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    E      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASER----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A + G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQSGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL+  G L+ +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLRGIGGLDKLYENLDDIAPLGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A+LS +L  ++ DV +    E L+  + N   LI     L F   +N +         
Sbjct: 241 ENAQLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLVFKSWLNELL-------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G +   E D  +    S  S   D  +                  
Sbjct: 293 --------------DGGSGVVEADEKSANTASSASPAVDMDT------------------ 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 321 -SAVTIDRSQYETILDEASFNAWLEKLKAADVFAFDTETDSLDYMVANLVGLSFATEEGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 380 -AAYVPVAHDYLDAPAQLDRD---------WVLEQLKPILEDDAQAKVGQNLKYDASVLA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 430 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S++E TG+ ID 
Sbjct: 490 ELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDD 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI++ L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 550 MKLSAQSQEIAQRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGTPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 610 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ D G++IR+AFI+P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 669 LSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQ 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G  I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY+
Sbjct: 729 QGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 789 NKYFERYPGVMQYMEDTRSAAADQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 849 QGTAADIIKKAMLLVDEWIQAEGQGRVKLLMQVHDELVFEVEESSLAEIESKVQQLMESA 908

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L VPL       +NW + +
Sbjct: 909 A----DLDVPLVAEAGHGDNWDQAH 929


>gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
 gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
          Length = 929

 Score =  987 bits (2551), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/984 (36%), Positives = 551/984 (55%), Gaps = 71/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G    A+ G  NML  LLQ    +   SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLQ----QYSPSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YKA+RP +PE L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P+  L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAVQAEKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + ++ 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGLSFRGAKTMAPKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L + + +   L       EF + ++ + +       
Sbjct: 241 EVAYLSYQLATIKTDVELELSCDQLTVNELDVDELHRLFSRYEFKRWLSDIESGTWMQGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                V  ++                                          +  + +++
Sbjct: 301 KSSQPVQTVSNA----------------------------------------VVEQAVEE 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ D Y  I++ K +  WV++L+     +F   TD +D   +  I ++ +    +
Sbjct: 321 DNVPTLSADGYVTILDEKTLLDWVERLKLADVFAFDTETDGLDTLTANLIGLSFAIKPGE 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+ H   D+         +L+ LK   E+E  LKIG N+K+DK V+ 
Sbjct: 381 --------AAYLPLA-HDYLDAPD-QLDRATVLALLKPLLEDEKLLKIGQNLKFDKGVMQ 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I +RG   D ML SYVLDS    HD+ S+A+++L +     +EI    K+ +  ++I
Sbjct: 431 RYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTITFEEIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V L L   L  KL     L  V++ +D P++ V+S++E TG+ ID 
Sbjct: 491 ALEQAGPYAAEDADVTLHLHQTLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDP 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E++  L  LE   Y+L+GE+FNLSS KQL  IL+ K K P   KT  G   T
Sbjct: 551 AILAEHSKELTTRLAELEIQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKTPKGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  A T TGR
Sbjct: 611 NEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    +++ADYSQIELRI+AH++    L   F 
Sbjct: 670 LSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDEGLLNAFA 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N LDIHR  A+E+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL IPRSE+  Y+
Sbjct: 730 NGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    ++GYV T+ GRR++  +I+S  +  R   ERAAINAP+
Sbjct: 790 NLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AMI++   L+      KM++Q+HDELVFE+ +  +  +   I   ME   
Sbjct: 850 QGTAADIIKKAMIAIDDWLQKDAPKVKMIMQVHDELVFEIDDSIVEESISKIKVLMEGCM 909

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL+V+I    NW + +
Sbjct: 910 ----QLNVPLQVDIGTGMNWDQAH 929


>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
 gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
          Length = 1020

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1002 (42%), Positives = 619/1002 (61%), Gaps = 35/1002 (3%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            Q  +H+FLVDGSSF++RA++ +    RK     D LP  A+  FC  L++ +++      
Sbjct: 27   QPGDHVFLVDGSSFVFRAYFQSINQDRKYNYRSDRLPTGAVRLFCTKLFQFVRDGALGIR 86

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H A+IFD    +FR E+YP YKANR   P+ L+PQ PL+R A +AFG+  +E   +EA
Sbjct: 87   PTHLAIIFDKSEDSFRKELYPLYKANRSDPPDDLIPQFPLMREAVKAFGLIPVEQARYEA 146

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----------KIDIEH 167
            DD+IATY   A+  G  V I+S DKDLMQL+     +YD    E          +I +  
Sbjct: 147  DDLIATYARQAQAAGADVLIVSADKDLMQLIGERVAMYDPASGESGGRGSRPERRIGVPE 206

Query: 168  VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            V++ +G+ PE++V +QAL GDS DN+PG+PGIG KTAA L+++YG+L+ +L  AS IKQ+
Sbjct: 207  VVEYFGVGPEQVVDVQALAGDSTDNVPGVPGIGIKTAATLIKDYGDLDTLLARASEIKQE 266

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRR++++E+A+ AR+S++LV L TDVP+ +PL  L+LE  +G +L+SFLKA+EFT ++ R
Sbjct: 267  KRRQSLIEHADKARISKELVKLVTDVPLEVPLADLVLEQPDGKQLVSFLKAMEFTTIVRR 326

Query: 288  VATTYDCDAANIEP----VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
             A  +  +AA I+P     V           A  +      T            T    +
Sbjct: 327  AAEAFGVEAAEIDPDPRLAVSGSGPLFAGQSAPVSTPPEADTDTAPPAPPAVALTGARPN 386

Query: 344  EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
               P  L   R Q+     ++   Y  + +  +++ W  K    G  +F   T ++D   
Sbjct: 387  VLEPADLAATRAQEARATKVDRSHYRMLTSLDELKAWCAKARDQGFVAFDTETTSLDPMQ 446

Query: 404  SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFF 457
            +  + ++++    +          +I L+   + D               + L+ LK   
Sbjct: 447  ADLVGVSLALAPNE--------ACYIPLAHVGAGDGLFTEGLLPGQIPFNDALAALKGML 498

Query: 458  ENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT- 516
            E+   LKIGHN+KYD  VL R+GI++  ++  M MSY LD+GR  H +  ++ K+L +T 
Sbjct: 499  EDGGTLKIGHNVKYDAAVLARHGITVAPYDCTMCMSYALDAGRGGHGMDELSIKYLGHTP 558

Query: 517  --RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
                E+    KS I  D++       +A E+++V L+LW +L+P+L  E +  VYE L++
Sbjct: 559  IAFTEVAGKGKSQITFDRVPLEAATAYAAEDADVTLRLWRVLKPRLPSEGMTTVYETLER 618

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P+I V+++ME  GI ID+  L ++S+E ++    LE+ I  L+GEK N+ SPKQ+GD+LF
Sbjct: 619  PLIAVLARMEARGISIDRATLARLSSEFAQGAARLEDEISGLAGEKINVGSPKQIGDLLF 678

Query: 635  TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
             K++ P   KT TG W T A  L+++    + + + IL WRQLSK++STY D+LPN++N 
Sbjct: 679  GKMQLPGATKTPTGAWSTKANVLDELAEAGHELPQKILAWRQLSKLRSTYTDALPNYVNP 738

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
             T RVHT Y+LA+T TGRL+S EPNLQNIPI+T+ G++IRRAF++ P  KL+SADYSQIE
Sbjct: 739  TTHRVHTSYALAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAVPGTKLVSADYSQIE 798

Query: 755  LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            LR+LA IA+I  L Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS 
Sbjct: 799  LRLLAEIAEIPALRQAFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 858

Query: 815  FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            F LA QL IPR EA  YIKRYF RFPGI  Y+++T+ + R++GYVET+FGRR HY +I +
Sbjct: 859  FGLANQLGIPRDEAGQYIKRYFERFPGIRAYMDETRAYCREHGYVETLFGRRCHYPDIAA 918

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               SIR  NERAAINA +QG+AADI RRAMI +  +L D  L+ +MLLQ+HDELVFEVP+
Sbjct: 919  SNPSIRAFNERAAINARLQGTAADIIRRAMIRMEGALADAGLSARMLLQVHDELVFEVPD 978

Query: 935  EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             E+     ++   ME A  P + L VPL+V  + ++NW+E +
Sbjct: 979  AEVEATLPVVRRVMETAARPAVELAVPLQVEARAADNWEEAH 1020


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/985 (37%), Positives = 537/985 (54%), Gaps = 71/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    E      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASER----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+YP+YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G+LE +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSLEKLYDNLDDIASLGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    + L+  + N   LI     L F   +N +         
Sbjct: 241 EEAFLSYELATIKLDVELEETPDSLLKAEPNTDELIKLYGQLVFKSWLNELLEG------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G+ +  E     +   +  ++    TS +                
Sbjct: 295 -------------GTGVVVADEKSGAASGAGASATASEIDTSAV---------------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I++ +    W+ KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 326 ----TIDRSQYETILDQQAFNTWLDKLKAADVFAFDTETDSLDYMVANLVGVSFATEEGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 382 -AAYVPVAHDYLDAPEQLDRD---------WVLEQLKPILEDDAQAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 432 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +   EKL  +YE ++ P++ V+S++E TG+ ID 
Sbjct: 492 ELEQASPYAAEDADVTLRLHNRLLANIEQDEKLKTIYEEVEVPLVPVLSRIERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  ++++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 552 MKLAAQSQEIALRLDELEQQAFEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ D G++IR+AFI+P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 671 LSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQ 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 QGKDIHAATAAEIIGVDIEQVSAEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQQYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 791 DTYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E       K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDEWIESQGQGRVKLLMQVHDELVFEVQESALAEIESKVQELMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 911 A----QLDVPLIAEAGHGDNWDQAH 931


>gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
 gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
          Length = 931

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/984 (40%), Positives = 592/984 (60%), Gaps = 61/984 (6%)

Query: 1   MQKEN-----HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  +N     HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML++ L      
Sbjct: 1   MSTQNFGEGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLYRYLGGLSGS 60

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H AVIFDY   +FRN+IY  YKANRP  PE L+PQ PL R AT+AF I   E++GF
Sbjct: 61  DAPTHVAVIFDYSGKSFRNQIYDKYKANRPPAPEDLVPQFPLTRDATRAFNIACYEVEGF 120

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADDIIAT            TIIS+DKDLMQLV     + D +K   ID + V +K+G+ 
Sbjct: 121 EADDIIATLAKQVRDSEGRCTIISSDKDLMQLVGDGVQMLDPMKNRIIDTDGVREKFGVA 180

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+++V +QAL GDS+DN+PG PGIG KTAALL+ EYG+L+++L  A  IKQ KRRE++++
Sbjct: 181 PDRVVDVQALAGDSVDNVPGAPGIGIKTAALLINEYGDLDSLLERAGEIKQPKRRESLID 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            A+  R+SR LV L   + +   L+ L ++  +   L+ FL  +EF  +  RVA     +
Sbjct: 241 NADLIRISRDLVQLDEKMALDFTLDDLEVKPADPEALLGFLGEMEFRTMSKRVADALGVE 300

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                                      + + +E       +E +
Sbjct: 301 -------------------------------------------APVVAETEAAANPVETV 317

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                  I+ D Y  + +   +Q+W+  +  IG  +    T +++   ++ + I++    
Sbjct: 318 P------IDPDKYECVSDVAALQKWIDHIRAIGHVAVDTETTSLNEMRAELVGISLCVEA 371

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                   +        +  S D       T  +L  LK   E+   LKIG N+KYD  +
Sbjct: 372 GIACYIPLIHKAAASDDLFGSADLAEGQLDTNVVLDLLKPVLEDPAVLKIGQNMKYDAKI 431

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
             RYG+ +  F+D MLMSY  ++G+ +H + S+++++L ++    K +L + KS+I  DK
Sbjct: 432 FARYGVKVAPFDDTMLMSYAQNAGKHNHSMDSLSERYLGHSPISIKTLLGTGKSAITFDK 491

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   ++A E+++V L+LW  L P L +EK+  VYER+++P++ V+++ME+ GI++D+
Sbjct: 492 VPVADAVKYAAEDADVTLRLWQFLGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDR 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L ++S   ++ +  LE  I++ +G+ FN+ SPKQLG+ILF KL+ P G K KTG +  
Sbjct: 552 DTLSRMSNAFAQKMAGLEAEIHEKAGQSFNVGSPKQLGEILFDKLELPGGKKGKTGAYS- 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T  D+ +    ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGR
Sbjct: 611 TGADILEDLATEHELPALVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYSIAGANTGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIPI+++ G++IR AF++     L++ DYSQIELRILAH+AKI  L + F 
Sbjct: 671 LASTDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDYSQIELRILAHVAKIDALKEAFY 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N +DIH + A+++F V +E + P +RR AK INF +IYGIS F LA  LRIPR+EA  +I
Sbjct: 731 NGVDIHALTASQMFNVPLEGMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQAFI 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RFPGI  Y+++T  F +++ +V+T+FGR+IH  +IN+ K       +RAAINAPI
Sbjct: 791 NTYFERFPGIRTYMDETVEFAKEHNFVQTLFGRKIHTPDINA-KGPGAGFAKRAAINAPI 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ RRAMI +  +++D  L  KMLLQ+HDELVFEV E+ +   +  +   ME A 
Sbjct: 850 QGTAADVIRRAMIRMPAAIKD--LPAKMLLQVHDELVFEVAEDAVEDVTNAVRKVMENAA 907

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
            P I L VPL V+     NW E +
Sbjct: 908 EPAIKLTVPLTVDAGQGANWAEAH 931


>gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
 gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
          Length = 966

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/974 (42%), Positives = 603/974 (61%), Gaps = 36/974 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKLL++ + +   +H AVI+
Sbjct: 26  RLFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGD-TPTHLAVIW 84

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   TFRN +Y  YKA+RP  PE L+PQ PLVR AT+AFG+PAIE+ G+EADD+IA Y 
Sbjct: 85  DHSEKTFRNTLYDQYKAHRPPPPEDLIPQFPLVREATRAFGVPAIELPGYEADDLIAAYA 144

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A + G    I+S+DKDLMQLV     ++D +K  +I+ E V +K+G+ PE++V +QAL
Sbjct: 145 CKAREVGGEAVIVSSDKDLMQLVGDGVSMFDPMKNVRIEREQVFEKFGVYPEQVVDVQAL 204

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAA L+ E+G+L+ +L  A  IKQ KRRE ++ +A+  RLSR 
Sbjct: 205 CGDSVDNVPGAPGIGIKTAAQLITEFGDLDTLLERAGEIKQPKRRETLINFADQIRLSRA 264

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D P+  PL+ L + + +   L +FL  +EF  L  RV                 
Sbjct: 265 LVKLDCDTPLPEPLDDLKVREPDKEVLAAFLDQMEFRSLARRVG---------------- 308

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
               +    A+   +DR      +  S++S   +   +   P               I++
Sbjct: 309 ----DGSAAAVPGSLDRPAAPPKAPVSTVSYMGAAARAAAQPVA---------EPVTIDH 355

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  + + + ++ WV K    G  +F   TD + +  +    ++++    +        
Sbjct: 356 AAYACVRDLETLRAWVDKATAKGVVAFDTETDALSSATAGLCGVSLAIAPGEACYIPVGH 415

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                L++  + D         ++++ LK   E+   LK+  N KYD  VL R+GI +  
Sbjct: 416 CEKEGLALEAAADLV--QIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARHGIQVSP 473

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
            ED ML+SYVL++G   H +  +++ WL +     K++  + K+ I    ++ S+   +A
Sbjct: 474 IEDTMLISYVLEAGLHGHGMDELSELWLGHKPIPFKQVAGTGKAQISFKHVALSEATAYA 533

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E+++V L+L+  L+P+L  E LL VYE L++PM  V++ ME  GI++D + L+++S E 
Sbjct: 534 AEDADVTLRLYETLKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALRRLSNEF 593

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           S  +   E    +L G  FNL SPKQ+GD+LF +++   G KT TGQW T +  LE +  
Sbjct: 594 SLRMAEFEARATELVGRPFNLGSPKQIGDVLFGEMQIKGGKKTATGQWSTDSDVLESLAL 653

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            ++ + + +L+WRQLSK+K TY ++L   I +RT RVHT Y+LA+T TGRL+S +PNLQN
Sbjct: 654 -EHELPRVLLDWRQLSKLKGTYTENLVAAIAERTGRVHTSYALAATTTGRLSSSDPNLQN 712

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T+ G+KIR+AFI+P  K LISADYSQIELR+LAHI  I  L + F+  LDIH M A
Sbjct: 713 IPVRTEEGRKIRKAFIAPQGKVLISADYSQIELRLLAHIGDIPQLKRAFQEGLDIHAMTA 772

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+F   IE + P +RR AK INF I+YGIS F LA QL IP+ EA  YIK YF RFPGI
Sbjct: 773 SEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGIPQGEAGAYIKTYFERFPGI 832

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y++ TK FVR++GYV TIFGR+I+  EI +     R   ERAAINAPIQG+AAD+ RR
Sbjct: 833 QAYMDATKAFVREHGYVTTIFGRKINIPEIQAKSVGQRQFAERAAINAPIQGAAADVMRR 892

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI + ++L+   L+ +MLLQ+HDELVFE PE E  TA  +I + MEKA  P + L VPL
Sbjct: 893 AMIRMPEALQAAGLSARMLLQVHDELVFEAPEAEAETARGVIANVMEKAAEPAVALSVPL 952

Query: 963 KVNIKVSNNWQEEN 976
            V ++ ++NW E +
Sbjct: 953 TVEVRAAHNWDEAH 966


>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
 gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
          Length = 929

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/985 (37%), Positives = 550/985 (55%), Gaps = 73/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEEYKSHRPPMPDELRAQIEPLHKMVKAMGLPLLAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V++K+GIPP  M+   
Sbjct: 121 LALEAEKAGQAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKDIYANLDKVATLTFRGAKTMAAKLEKNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L +++     L++  K  EF + I  +         
Sbjct: 241 EMALLSYQLATIKTDVELELTSDQLTVKEPAVEELLALFKHYEFKRWITDLEEGKWLQGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P +  +   +++  A+E                                        
Sbjct: 301 KGNPSMKKVAAVQDEPAAVE---------------------------------------- 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   +++D Y  I++ +    W+ KL+     +F + TD++D   +  I ++ +T    
Sbjct: 321 -AASVLSSDGYVTILDEETFASWLNKLQNSELFAFDLETDSLDTLSANIIGLSFATAPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      ++         ++L+ LK   EN   LK+G N+K+D+ VL 
Sbjct: 380 -AAYLPVAHDYLDAPAQLDRN---------DVLARLKPLLENPQALKVGQNLKFDRGVLK 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I ++G   D ML SY L+S    HD+ ++A +WL++     +EI    K  +  ++I
Sbjct: 430 SYDIELQGIRFDTMLESYALNSVIGRHDMDTLALRWLNHKTVTFEEIAGKGKKQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P L  E+   +V+E+L+ P++ V+S++E  G+ IDQ
Sbjct: 490 ALEQAGHYAAEDADVTLQLHLKMWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQ 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+   L  LE+  ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 550 GILATHSQELGSRLAELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  + RVHT Y    T TGR
Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+PP  ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPPGYRIVAADYSQIELRIMAHLSQDKGLLSAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIHR  AAE+FGV+++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 729 SEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSSFGLSRQLNIGAGEAKKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T+    + GYV T+ GRR++  +IN+  +  R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLQYMESTRELAAEKGYVSTLDGRRLYLPDINASNAIRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   LE       KM++Q+HDELVFEV  + +  AS  I   ME +
Sbjct: 849 QGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVHDELVFEVRADAVEAASAQIRALMEGS 908

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL+V+I V +NW + +
Sbjct: 909 MA----LDVPLRVDIGVGDNWDQAH 929


>gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220]
 gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/984 (36%), Positives = 552/984 (56%), Gaps = 72/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GAPTGAMYGVLNMLRSLILQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKNMAGKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF + +  V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVKQPIADELLGLFKQYEFKRWVADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + +E   +
Sbjct: 301 GAKP-----------------------------------------AAKPQETIVVEATPE 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D+Y  I++   +++W+ KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPATALSYDNYVTILDEATLEEWIAKLKKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+D           L+ LK   E+E+  K+G N+KYD+ +L 
Sbjct: 380 -AAYVPVAHDYLDAPDQISRD---------RALALLKPLLEDENAHKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I +RG   D ML SY+L+S    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 430 NYDIELRGIVFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E +D P++ V+S++E  G++I  
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E++  L  LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEELTLRLNELEQKAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  INK+T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++ + S+ I   ME   
Sbjct: 849 QGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKIHQLMEN-- 906

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
             + ++ VPL V +    NW + +
Sbjct: 907 --ETHIDVPLLVEVGSGENWDQAH 928


>gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45]
 gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45]
          Length = 935

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/977 (40%), Positives = 577/977 (59%), Gaps = 50/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML K +++S      +H A
Sbjct: 6   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQKYVEDSSGPDAPTHVA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT AF I   E++G+EADDIIA
Sbjct: 66  VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRTATLAFNIACKELEGYEADDIIA 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T T  A + G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ PE++V +
Sbjct: 126 TLTCQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVFPERVVDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ ++G+LE +L  A  IKQ KRR+ ++E  E   L
Sbjct: 186 QALAGDSVDNVPGAPGIGIKTAALLINDFGSLEELLDRADEIKQPKRRQTLIEKREQIEL 245

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L + D +   L+ FL  +EF  L  RVA  +  DA      
Sbjct: 246 SKRLVQLDCETPLDFSLDDLEVRDPDPGVLLGFLTEMEFRTLTKRVADKFGKDAP----- 300

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                                 +  E  P     E         
Sbjct: 301 --------------------------------------VLPEAAPAAAGAEAGAAPEMPA 322

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+   Y  +   +++  W+ + +  G  +    T  ++      + I++     K     
Sbjct: 323 IDPAGYAWVKTAEELAPWIAETQQRGWVAVDTETTGLNEMACDLVGISLCITPGKACYIP 382

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     +  S +        ++ L  LK   E+   +KIG N+KYD  +  RYGI 
Sbjct: 383 LAHRAAATDDLFGSDELAEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARYGIG 442

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY +  G   H + ++++++LS+T    K +L S KS I  D++      
Sbjct: 443 ITPIDDTMLMSYAMHGGLHGHGMDTLSERYLSHTPIPIKSLLGSGKSQITFDRVPVEDAV 502

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A E++++ L+LW + +P+L  +++  VYE L++P++ V+++ME+ G+Q+D+D L ++S
Sbjct: 503 KYAAEDADITLRLWTIFKPQLHQDRVTRVYEGLERPLVPVLAEMEMAGVQVDRDTLSRMS 562

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              S+ +  LE  I++L+GE FN+ SPKQLG+ILF K+    G K KTG + T A  LE 
Sbjct: 563 NAFSQKMAQLEAEIHELAGESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLED 622

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ +   +L+WRQLSK+KSTY D+L  HINK T RVHT Y +A   TGRLAS +PN
Sbjct: 623 L-ATEHELPARVLDWRQLSKLKSTYTDALQEHINKETGRVHTSYVIAGANTGRLASTDPN 681

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++++ G++IR AF++P  K ++S DYSQIELRILAH+A I  L + F    DIH 
Sbjct: 682 LQNIPVRSEEGRRIREAFVAPEGKTIVSLDYSQIELRILAHMAGIDALKEAFREGQDIHA 741

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +E+++P++RR AK INF +IYGIS F LA  LRIPR EA  +I RYF RF
Sbjct: 742 MTASEMFNVPMEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEAQAFIDRYFERF 801

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++T  F +++  VET+FGR IH  EI S         +RAAINAPIQG+AADI
Sbjct: 802 PGIKTYMDETVAFAKEHKRVETLFGRIIHTPEI-SASGPRAGFAKRAAINAPIQGTAADI 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAM+ +  ++ +  +  KMLLQ+HDEL+FEV +             ME A  P + L 
Sbjct: 861 IRRAMVRMPGAIAE--IPAKMLLQVHDELIFEVEQGAEDDLIAAARSVMEGAAEPVVKLD 918

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+     +W E +
Sbjct: 919 VPLVVDAGRGKSWAEAH 935


>gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
 gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
          Length = 1020

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/990 (44%), Positives = 640/990 (64%), Gaps = 23/990 (2%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++  +    +H 
Sbjct: 39   TKSDHVFLVDGSSYIFRAYHALPPLNRKSDGLNVNAVLGFCNMLWKLLRDMPETDRPTHL 98

Query: 62   AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            A++FD   VTFRN+IY DYKA+RP  P+ L+PQ  L+R A  AF +P +E  G+EADD+I
Sbjct: 99   AIVFDKSEVTFRNKIYADYKAHRPPAPDDLIPQFALIREAVHAFDLPCLEQAGYEADDLI 158

Query: 122  ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            ATY  +A + G   TI+S+DKDLMQLV+    +YDT+K+ +I    VI+K+G+PPEK+V 
Sbjct: 159  ATYARLACERGATTTIVSSDKDLMQLVNDCVTMYDTMKDRRIGTAEVIEKFGVPPEKVVE 218

Query: 182  LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +QAL GDS DN+PG+PGIG KTAA L+ +YG+LE +L  A+ IKQ KRRE ++E AE AR
Sbjct: 219  VQALAGDSTDNVPGVPGIGIKTAAQLINDYGDLEGLLTRAAEIKQPKRREALIENAEKAR 278

Query: 242  LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +SR+LV+L   V + +PL+ L + + +  +LI+FLKA+EFT L  RVA     D A++  
Sbjct: 279  ISRQLVLLDDHVALEVPLDDLAVHEPDPRKLIAFLKAMEFTTLTRRVAEYSQIDPADVAA 338

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN----SEQTPQKLFLERLQK 357
                 +       A                ++      + +    S+ TP  L   R + 
Sbjct: 339  NQQLKSGGGTAVPAPAAASAGTNAAGKPAAAAPKTGDPRTDKSAMSKGTPVSLAEARAEA 398

Query: 358  LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 I+ + Y  I +  ++  W+ ++  +G  + +   +++D   +    IA++     
Sbjct: 399  AKSARIDREKYQTIRSLPELNAWIARIHDLGRVTIEAKANSIDPMQASLCGIALALAPN- 457

Query: 418  DDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIGHNI 469
                   +  +I L+   + D  G             ++ L+ LK   E+   LKIG NI
Sbjct: 458  -------DACYIPLAHRQAGDGGGLFDAGLAPDQVKDRDALAALKPVLESAGILKIGFNI 510

Query: 470  KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
            K+  ++L ++GI++   +DI LMSY LD+GR S    S+A+  L++      E++ S K+
Sbjct: 511  KFVAVLLAQHGITLANVDDIQLMSYALDAGRGSQKFESLAEHVLAHAVLGEGELVGSGKN 570

Query: 527  SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
             +  ++++  +   HA E ++VI +LW +L+P+L+ E++  VYE L++P++ V++QME  
Sbjct: 571  KLTFEQVAIDRATAHAAEAADVIHRLWRVLKPRLVAERMTAVYETLERPLVTVLAQMERR 630

Query: 587  GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
            GI ID+ +L ++S + ++    +E  + +L+GE  N+ SPKQ+GDILF K+  P G KTK
Sbjct: 631  GIAIDRQVLSRLSGDFAQTAGRVEAELQELAGEPINVGSPKQIGDILFGKMGLPGGTKTK 690

Query: 647  TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            TG W T+A  L+ +    N   + ILEWRQ+SK+KSTY D+LP ++N ++QRVHT Y+LA
Sbjct: 691  TGAWSTSASILDDLAEQGNDFARKILEWRQVSKLKSTYTDALPTYVNPQSQRVHTTYALA 750

Query: 707  STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            +T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P  KL+SADYSQIELR+LA IA I  
Sbjct: 751  ATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPV 810

Query: 767  LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            L Q F++ LDIH M A+E+FGV I+ +  ++RR AK INF IIYGIS F LA QL I R 
Sbjct: 811  LKQAFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLANQLGIARE 870

Query: 827  EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            EA+ YIKRYF RFPGI  Y+++T+ F R++GYV T+FGR+ HY EI +  +S+R  NERA
Sbjct: 871  EASAYIKRYFERFPGIRAYMDETREFCRKHGYVTTLFGRKCHYPEIKASNASVRAFNERA 930

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            AINA +QG+AADI RRAM  V  +L + KL+ +MLLQ+HDEL+FEVP++E+     ++ H
Sbjct: 931  AINARLQGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDDEVAATLPVVQH 990

Query: 947  SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M+ A  P + L VPL V+ + ++NW E +
Sbjct: 991  VMQDAPFPAVLLSVPLHVDARAADNWDEAH 1020


>gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T]
 gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T]
          Length = 939

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/980 (37%), Positives = 551/980 (56%), Gaps = 50/980 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L R   G P  AI G  +ML +L  + + E      A +
Sbjct: 2   PTLLLVDGSSYLYRAFHALPDL-RNSQGEPTGAIRGVLSMLRRLESDYKAEFR----ACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ YP+YK++RP +P+ L  Q+  +  A +A G P + ++G EADD+I T 
Sbjct: 57  FDAKGKTFRDDWYPEYKSHRPPMPDDLRAQIAPLHEAVRAEGWPLLSVEGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T +A + G+ V I + DKDL QLV P     +T+ EE +D   V  K+G+PPE++V   A
Sbjct: 117 TRLALERGWEVVISTGDKDLTQLVRPGVRWVNTMSEEVLDEAGVAAKFGVPPERIVDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTA   L EYG L+N++ NA ++   K  EN+  + +   L R
Sbjct: 177 LVGDTVDNVPGVEKCGPKTAVKWLTEYGTLDNLVANADKV-GGKVGENLRRHLDFLPLGR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV-V 303
           KLV + TDV + + L+ L     +   L +  +  EF   +  +    +  AA+      
Sbjct: 236 KLVTVATDVELPVGLDELPARADDKAALRALYERFEFKSWLKDLDGGAESVAASKAASDA 295

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
              +  EN+G    +E                       +  TP +  +  +    Q   
Sbjct: 296 RRFDRQENRGQTPISEA----------------------ATTTPGEGGVCAISADEQMKD 333

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I++      W+ K+      +F   T ++D   ++ + ++ +    +      
Sbjct: 334 LTPVYLPILDWPTFDAWLAKISAAELTAFDTETTSLDPMAARLVGMSFAVEPGE------ 387

Query: 424 VETIFIDLSVHTSQ--DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
               ++ L+   +       +     E+L  L+ +FE++   K+G N+KYD  VL  +GI
Sbjct: 388 --AAYLPLAHRGAAQLPEAPEQLPLDEVLDRLRPWFESDRHAKLGQNLKYDAHVLANHGI 445

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQ 537
           ++RG   D +L SYVL+S ++ HD+ S+A++ L        E+       I  D++  ++
Sbjct: 446 ALRGIAHDTLLESYVLESDKA-HDMDSLAKRHLGLATIPYTEVCGKGAKQIGFDEVDVAR 504

Query: 538 VQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             E+A E+++V L+L   L P+L    +L  +Y  L+ P++ V+ +ME TG+ ID  LL 
Sbjct: 505 ATEYAAEDADVTLRLHQHLCPQLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPFLLG 564

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q S E+ + L +LE   + L+G+ FNL SPKQLG+ILF KL  P   KT TGQ  T  + 
Sbjct: 565 QHSEELGRRLYTLEGEAHALAGQPFNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEV 624

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D P+ K +LE R LSK+KSTYAD LP  +N RT RVHT +S A+ +TGRL+S 
Sbjct: 625 LEKL-AEDYPLPKLLLEHRGLSKLKSTYADKLPRMVNPRTGRVHTSFSQATAVTGRLSSS 683

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI+T  G++IR AFI+P    ++SADYSQIELRI+AH++    L + F    D
Sbjct: 684 EPNLQNIPIRTPEGRRIRAAFIAPRDHLIVSADYSQIELRIMAHLSDDARLLEAFARGED 743

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +HR  A E+FGV   +V+ + RR+AK INF +IYG+S   LA  L I R+ A  +I RYF
Sbjct: 744 VHRATAGEVFGVAPAEVTSEQRRYAKVINFGLIYGMSAHGLAKNLGIERAAAQAWIDRYF 803

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ EY+++T+   R+ GYVET+FGRR++  +I + ++  R   ERAAINAP+QG+A
Sbjct: 804 ARYPGVAEYMDRTRAEAREQGYVETVFGRRLYLPDIRASQAGRRAGAERAAINAPMQGTA 863

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ ++AMI+    L    L +K++LQ+HDELV EVP  E+ T  + +   M        
Sbjct: 864 ADLIKKAMIATDAWLASCGLKSKLVLQVHDELVLEVPGAELETVREELPRLMGGVA---- 919

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L+VPL V +   +NW E +
Sbjct: 920 TLKVPLLVEVGAGDNWDEAH 939


>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
 gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
          Length = 985

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/983 (36%), Positives = 533/983 (54%), Gaps = 68/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 60  NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 114

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 115 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTL 174

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D   VI+K+GIPPE ++   A
Sbjct: 175 ACQASQSGQKVLISTGDKDMTQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLA 234

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L   +
Sbjct: 235 LMGDSSDNIPGVSGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGEKLLAEKD 294

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV +    + L L D N   LI +    EF + +  V    +     
Sbjct: 295 MADLSYALATIKTDVALEFSPQDLPLGDSNNDALIEYFGRYEFKRWLGEVMNGTNSVTQP 354

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            + V   IN  +        E   + ++K                               
Sbjct: 355 TQSV--KINHYQATPAVKTDESAVENSVK------------------------------- 381

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
             + I+   Y  I+   D+  WV+KL      +    TD +D   +  + ++ +  + + 
Sbjct: 382 --FKIDRSRYENILTETDLTHWVEKLSAEKLIAVDTETDGLDYMSANLVGVSFALENGEA 439

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                       L +H       K       L+ LK   EN +  K+G N+K+D  +  R
Sbjct: 440 AY----------LPLHLDYLGAPKTLEKSTALAALKPILENPNIGKVGQNLKFDMTIFAR 489

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            GI +RG   D ML+SY LDS    H++  +A+++L +     ++I    K+ +  ++I 
Sbjct: 490 NGIELRGIEFDTMLLSYTLDST-GRHNMDDLAKRYLGHQTIGFEDIAGKGKNQLTFNQIP 548

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L  +L  KL     L+ +Y+ ++ P++ V+S+ME  G+ ID D
Sbjct: 549 LEQAGEYAAEDADVTMKLQQVLWEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLIDSD 608

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI++ L +LE   ++L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 609 ALFLQSNEITERLTALEMQAHELAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 668

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 669 EEVLEELAYS-HELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRL 727

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+    K+I+ADYSQIELRI+AH++    L   F  
Sbjct: 728 SSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDAGLINAFAQ 787

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FG+ +E+V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+ 
Sbjct: 788 GKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGISRADAQRYMD 847

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+  ++   +   +  GYVET+FGRR++  EINS  +  R   ER AINAP+Q
Sbjct: 848 LYFQRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAERVAINAPMQ 907

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +        M++Q+HDELVFEV  E+I   S +I   ME A  
Sbjct: 908 GTAADIIKRAMIKLDE-ITRDDPDIHMIMQVHDELVFEVRSEKIAFFSDLIKQHMEAAA- 965

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V++ V  NW E +
Sbjct: 966 ---ELVVPLIVDVGVGENWDEAH 985


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/990 (42%), Positives = 609/990 (61%), Gaps = 50/990 (5%)

Query: 6    HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
             ++L+DGS +I+RAF+A P L+R  DGLPV A+ GFCNMLWKLL+ ++  +  +H AVIF
Sbjct: 51   RVYLIDGSGYIFRAFHALPPLTRPSDGLPVGAVHGFCNMLWKLLRETKGANAPTHLAVIF 110

Query: 66   DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            D+  VTFR+ I   YKA RP+ P  L+PQ  L+R A +AF +  IE +GFEADDIIA YT
Sbjct: 111  DHSRVTFRSAISATYKAQRPEPPAELVPQFALIRDAVRAFNVACIEQEGFEADDIIAAYT 170

Query: 126  YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
              A   G  V I+S+DKDLMQLV P   + DT+K + I    VI+K+G+PP K+V +Q+L
Sbjct: 171  CQAADAGADVVIVSSDKDLMQLVRPGVTMLDTMKNKVIGEAEVIEKFGVPPSKVVDVQSL 230

Query: 186  TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
             GDS+DN+PG+PGIG KTAA L++EYG+LEN+L NA+ IKQK RRE ++E+A+ ARLSR+
Sbjct: 231  AGDSVDNVPGVPGIGIKTAAELIREYGDLENLLANAALIKQKMRRERLIEFADQARLSRR 290

Query: 246  LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
            LV L  D+P+  PL+   +E+ +   L+ FL+ +EF  L  R++  +  + +        
Sbjct: 291  LVELSCDMPVEKPLDLTAVEEPDPHALLEFLRTMEFNSLTKRISEAFGVEPST------- 343

Query: 306  INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                         E+ R + +   +    ++   K +   TP          L   P + 
Sbjct: 344  ------------GEMTRPSPVDGVE----AEAPEKSSGGDTPADEVRRVEAWLKAIPFDR 387

Query: 366  DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
              Y ++ + + ++ W+      G  +F   T  +DA  +K   +A++    +        
Sbjct: 388  SLYVQVTDLQALEDWIAAATEQGFVAFDTETTALDAMSAKLCGVALALEPGR-------- 439

Query: 426  TIFIDLSVHTSQDSTG------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              +I L+                    +  L  LK   E++  LKIG NIKYD L++ R+
Sbjct: 440  ACYIPLAHRAGDGLDFTGAGEIAQLPMESALPRLKALLEDDSVLKIGQNIKYDALIMRRH 499

Query: 480  G-ISMRGFEDIMLMSYVLDSGRSS---HDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            G I +  ++D MLM+Y  D GR       +  ++++ L +T     ++    K+    D 
Sbjct: 500  GDIRVAPYDDTMLMAYACDQGRGGLAGFGMDELSKRHLGHTPIAFTDVAGKGKAQSTFDC 559

Query: 533  ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            I+  +  E+A E+++V L+LW L R ++  E +  VY  L++PM  V+ QME  GI++D+
Sbjct: 560  IAVDKATEYAAEDADVTLRLWHLFRARIAAEGMAAVYATLERPMPAVLGQMEFNGIEVDR 619

Query: 593  DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             +L ++S + +++L  LE+ IY+L+G++FN+ SP+Q+ D+LF K   P   KT TG+W T
Sbjct: 620  TVLSRLSGDFAQSLARLEDEIYELAGQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKWST 679

Query: 653  TAQDLEQINCGDN------PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
             A+ LE +   ++       +   +LEWRQL+K+KSTY DSLP HI+  T R+HT YSLA
Sbjct: 680  GAKVLEDLVSSEDLTEDQRRLPAKLLEWRQLAKLKSTYTDSLPQHIDADTGRIHTCYSLA 739

Query: 707  STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            ST TGRL+S EPNLQNIPI+T  G+ IR AFI+ P KKLISADYSQIELR+LAH+A I  
Sbjct: 740  STSTGRLSSTEPNLQNIPIRTREGRMIRSAFIAAPGKKLISADYSQIELRVLAHMADIPA 799

Query: 767  LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            L   F   LDIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F L+ QL IPR 
Sbjct: 800  LKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIYGISAFGLSQQLGIPRQ 859

Query: 827  EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            EA DYI +YF RFPGI  Y++  ++ V ++G+VET+FGR+IH+ EI +PK ++R   ERA
Sbjct: 860  EAGDYIAKYFERFPGIRAYMDAMRSKVHEDGHVETLFGRKIHFPEIKTPKWNMRQFFERA 919

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            AINAPIQG+AADI RRAM+ V  +LE   +  +MLLQ+HDELVFE  + E+    + +  
Sbjct: 920  AINAPIQGTAADIIRRAMVRVPAALEQAGVRARMLLQVHDELVFEADDSEVEATIKAVTR 979

Query: 947  SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             ME+A  P +   VPLKV+ + + NW E +
Sbjct: 980  VMERAAEPAVAFSVPLKVDARAAQNWDEAH 1009


>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
 gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
          Length = 931

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/985 (35%), Positives = 536/985 (54%), Gaps = 71/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A + G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G ++ +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGIDKLYENLDDIAGLGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    + L+  + N   L+     L F   +N +         
Sbjct: 241 ENAELSYQLATIKLDVELDETPDSLVKAEPNKDELVKLYGQLVFKSWLNELLDGGTGVVE 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + E                                    Q S +++   P          
Sbjct: 301 SDEKS--------------------------------GAQRSSVSAASAPDMDT------ 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 323 -SAVTIDRSQYETILDQATFNAWLEKLKAADVFAFDTETDSLDYMVANLVGLSFATQEGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 382 -AAYVPVAHDYLDAPQQLDRD---------WVLEQLKPILEDDTQAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I ++G   D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 432 RYDIELKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +Y+ ++ P++ V+S++E TG+ ID 
Sbjct: 492 ELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI++ L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 552 MKLAAQSQEIAQRLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINSETGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQ 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G  I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY+
Sbjct: 731 QGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 791 NKYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  +T     +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDQWIQAEGDGRVKLLMQVHDELVFEVQESALTEIESKVQELMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW++ +
Sbjct: 911 A----ELAVPLVAEAGHGDNWEQAH 931


>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
 gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
          Length = 971

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/981 (41%), Positives = 572/981 (58%), Gaps = 44/981 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L+++D S++I+RA++A P L+RK DGLPV A+ G+CNMLWKLL++ +     +H   IF
Sbjct: 25  RLWMIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGADGPTHLVAIF 84

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   TFRN +Y  YKA+RP  PE L+PQ PLVR AT AFG+  +E+ G+EADD+IATY 
Sbjct: 85  DHSDKTFRNTLYDQYKAHRPPAPEDLVPQFPLVREATAAFGVHCVELPGYEADDLIATYA 144

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G    I+S+DKDLMQL+     ++D +K+ ++    V +K+G+ PEKM+ LQAL
Sbjct: 145 CKARDAGGEAVIVSSDKDLMQLIGGGVVMWDPMKDRRLAEPEVFEKFGVGPEKMIDLQAL 204

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAA LL EYG+L+ +L  A  IKQ KRRE ++ +A+  RLSR+
Sbjct: 205 IGDSVDNVPGAPGIGPKTAAQLLDEYGDLDALLARAGEIKQPKRRETLINFADQIRLSRE 264

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D P   P+E   + D +   L +FL  +EF  L  RV                 
Sbjct: 265 LVRLTCDAPAPEPIEDFAVRDPDPETLSAFLDKMEFRSLQRRVG---------------- 308

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                  G A  +E       +    S+           + P +              + 
Sbjct: 309 ------DGRAGPSETSAFAPKRAPNLSAPVATPRYGQVVEGPAE----------AQIFDL 352

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           ++Y  +   + + +W+ +    GS  F   T ++ A H+    ++++     +     + 
Sbjct: 353 EAYECVQTEEALDRWIARAVEAGSVGFDTETSSLSATHAGLCGVSLAVGPN-EACYIPLT 411

Query: 426 TIFID-------LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                         V        +     + L+ LK   EN   LK+  N KYD  V+ R
Sbjct: 412 HEHEPQAGEGGLFGVPGEAREPIQQLDKAKALAKLKVLLENPSVLKVLQNAKYDLAVMAR 471

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535
            GI +  ++D ML+SYVL+ G   H +  +A+  L +     K +  + KS      ++ 
Sbjct: 472 RGIRVAPYDDTMLISYVLEGGLHGHGMDELARLHLGHDPVPFKSVAGTGKSQKSFRHVAL 531

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               ++A E+++V L+LW LL+P+L  E L  VYE L++P+  V+++ME  G++ID D L
Sbjct: 532 KPATQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAGVRIDPDRL 591

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++S+E    +  LE   ++++G  FN+ SP+Q+G+ILF +L  P G KT +GQW T A 
Sbjct: 592 KRLSSEFGLRMAELEAQAHEIAGRPFNIGSPRQIGEILFGELNLPGGKKTASGQWGTDAS 651

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +    + + + +L+WRQLSK+K TY D+L    +  T RVHT Y LA+  TGRLAS
Sbjct: 652 VLEDLAAT-HALPRVLLDWRQLSKLKGTYTDALTAAADPATDRVHTSYQLAAATTGRLAS 710

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G++IR+AFI+ P   LISADYSQIELR+LAHI  I  L + F+  L
Sbjct: 711 SDPNLQNIPIRTETGREIRQAFIAAPGHLLISADYSQIELRLLAHIGDIPELKRAFKAGL 770

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+FGV +E +  + RR AK INF I+YGIS F LA QL I + EA  YIK Y
Sbjct: 771 DIHAATASEMFGVPVEGMPSETRRRAKAINFGIVYGISAFGLAAQLGIDQGEAGAYIKTY 830

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPGI  Y++KT+  VRQ G+V T+FGRRIH   I+S   + R   ERAAINAPIQG+
Sbjct: 831 FDRFPGIRTYMDKTRAEVRQAGFVSTVFGRRIHIPAIHSKSGAERQFGERAAINAPIQGA 890

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI RRAMI +  +L +  L T+MLLQ+HDELVFE PE E   A  +I   ME A  P 
Sbjct: 891 AADIIRRAMIRMPTALAEAGLTTRMLLQVHDELVFETPEAEADRAITVIKRVMETASDPA 950

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           + L VPL V+ + + NW   +
Sbjct: 951 VALTVPLVVDARAAPNWDAAH 971


>gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
 gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
          Length = 932

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/980 (40%), Positives = 589/980 (60%), Gaps = 58/980 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + +         +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYV-EGNAGGDVTHVA 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E++GFEADDIIA
Sbjct: 64  VIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEMEGFEADDIIA 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G   TIIS+DKDLMQLV     + D +K + ID++ V +K+G+ P+++V +
Sbjct: 124 TLACQAREAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKTIDVDGVFEKFGVGPDRVVDV 183

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++E+     L
Sbjct: 184 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGEIKQPKRRQTLIEHRAQIEL 243

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D+ +   +E L + D     L+ FL  +EF  L  R++     +A  +   
Sbjct: 244 SKRLVQLDCDMELDFTIEDLEVRDPEPETLLGFLAEMEFRTLTKRISGALGVEAPAV--- 300

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                           +  T+   +E+ P     E         
Sbjct: 301 -----------------------------PEPAATTASPEAEEHPPLSASE--------- 322

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT-- 420
                +  I + + +Q W+  +   G  +    T  ++   +  + +++     +     
Sbjct: 323 -----HVTIRDAETLQSWIDAIHARGVVAVDTETTGLNEMRADLVGVSLCVDPGRAAYLP 377

Query: 421 -SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            + K      DL    ++ + G     +  L  LK   E+   LKIG N+KYD  +L R 
Sbjct: 378 LAHKDGGGADDLFGGEAKLAEG-QLDFETALGMLKPVLEDPAVLKIGQNMKYDAKILARN 436

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           GI++   +D ML+SY L +G   H + ++++++L +T    K +L + KS+I  D +   
Sbjct: 437 GITVAPIDDTMLLSYALHAGLHGHGMDALSERYLDHTPIPIKTLLGTGKSAITFDFVPIE 496

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +  ++A E++ + L+LW  L+P+L + ++  VYE +++PM+ V+++ME+ GI++D+D L 
Sbjct: 497 EATKYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLS 556

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S   ++ +  LE  I++L+GE FN+ SP QLG+ILF K+ F  G   K+G++ T A  
Sbjct: 557 RMSNAFAQKMAGLEAEIHELAGESFNVGSPAQLGEILFEKMGFEGGKTGKSGKYSTPADV 616

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   ++ + + +L+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGRLAS 
Sbjct: 617 LEDL-ATEHDLPRRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSIAGANTGRLAST 675

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++++ G++IR AF++ P   L+S DYSQIELRILAHIA I  L   F + LD
Sbjct: 676 DPNLQNIPVRSEEGRRIREAFVAEPGHVLVSLDYSQIELRILAHIAGIDALKTAFRDGLD 735

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR+EA  +I  YF
Sbjct: 736 IHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQAFIDTYF 795

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFPGI  Y++ T  F +++ YV+T+FGR+IH  EI + K       +RAAINAPIQG+A
Sbjct: 796 ERFPGIRAYMDDTVAFAKEHKYVQTLFGRKIHTPEIGA-KGPQAGFAKRAAINAPIQGTA 854

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI RRAM+ +  ++ D  L  +MLLQ+HDEL+FEV E+ +      +   ME A  P +
Sbjct: 855 ADIIRRAMVRMPAAIAD--LPARMLLQVHDELIFEVEEDAVDRVIPAVRQVMEGAAAPVV 912

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
           +L VPL V+     +W E +
Sbjct: 913 HLDVPLTVDAGQGRSWAEAH 932


>gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222]
 gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222]
          Length = 940

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/977 (41%), Positives = 577/977 (59%), Gaps = 46/977 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+R+ DGLP+ A+AGFCNM+WK LQ+ +     +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRRSDGLPIGAVAGFCNMVWKYLQDGKGSDQPTHAA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ A TFRN+IYP YKANRP+ PE L PQ PL R AT+AF I  IE +GFEADDIIA
Sbjct: 67  VIFDHSARTFRNDIYPLYKANRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +    A   G  VTIIS+DKDLMQLV     + D +K + I  + V +K+G+ PE++V +
Sbjct: 127 SLACQARDAGGRVTIISSDKDLMQLVGGGVEMMDPIKAKPIGPDEVREKFGVGPERVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDSIDN+PG PGIG KTAA L++EYG+LE++L  A+ IKQ KRR+ ++++AE  R+
Sbjct: 187 QALAGDSIDNVPGAPGIGIKTAAQLIEEYGDLESLLARAAEIKQPKRRQTLIDHAEQIRI 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L   + +   LE L + + +   L+ FL  +E   L  RVA  +  +   +  V
Sbjct: 247 SKRLVELDCGMVLDFTLESLEIREPDPEALLEFLTRMELRTLTKRVAERFGTEPPTMAEV 306

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            +                                                          
Sbjct: 307 AVPAPAA---------------------------------------GADPAMPAAAELPA 327

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+   Y  I +   + +W+ ++   G  +    T  +D   ++ + +++ T   +     
Sbjct: 328 IDRSLYITIRDEAVLAEWLAEIAEKGVVAIDTETTGLDEMQAELVGVSLCTGPGR-AAYL 386

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +  +     +  S             L+ LK   E+   LKIG NIKYD  VL R+GI 
Sbjct: 387 PLGHVDGAADLFGSGARVEGQMDLDRALAMLKPVLEDPSVLKIGQNIKYDWKVLARHGIR 446

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539
           M   +D ML+SY  ++G  +H +  +A  +L +     K+++ S KS I   +++  +  
Sbjct: 447 MVPLDDTMLLSYAQNAGAHNHGMDELADLYLGHRCLPIKDLIGSGKSQINFSQVAIDKAS 506

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E+A E++ V  +LW  LRPKL    +   YERL++PMI V++ ME+ GI+ID + LK++S
Sbjct: 507 EYAAEDAEVTWRLWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKRMS 566

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I++L+G  FN+ SPKQLG+ILF ++    G + KTG + T A+ LE 
Sbjct: 567 NAFAQKMAGLEAEIHELAGGPFNVGSPKQLGEILFERMGLAGGKQGKTGAFSTGAEVLED 626

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +L+WR +SK+KSTY D+LP H+N  T RVHT YS+A   TGRLAS +PN
Sbjct: 627 LAAEGHELPARVLDWRAISKLKSTYTDALPLHVNPETGRVHTSYSIAGAQTGRLASTDPN 686

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++TD G++IR AF++ P  +L+S DYSQIELRILAH+A+I  L Q F + +DIH 
Sbjct: 687 LQNIPVRTDEGRRIREAFVAAPGMRLVSLDYSQIELRILAHVAQIPALQQAFRDGIDIHA 746

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+++FGV +E + P +RR AK INF +IYGIS F LA  LRIPR+EA  +I  YF RF
Sbjct: 747 MTASQMFGVPVEGMDPMIRRRAKAINFGVIYGISGFGLARNLRIPRAEAQAFIDTYFERF 806

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P I  Y+++T    +Q+G+V T+FGRRI    IN           RAAINAPIQG+AADI
Sbjct: 807 PEIRAYMDRTVAGAKQDGFVRTLFGRRIMTPGINQS-GPAAGGARRAAINAPIQGAAADI 865

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI + +++    L  +MLLQ+HDELVFEV E  +    ++    M+ A  P + L 
Sbjct: 866 IRRAMIRMPQAI--AHLPARMLLQVHDELVFEVEEAAVPELVEVARGVMQGAADPAVRLD 923

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+     NW E +
Sbjct: 924 VPLIVDAGQGANWAEAH 940


>gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341]
 gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341]
          Length = 938

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/985 (35%), Positives = 539/985 (54%), Gaps = 64/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMVRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L ++  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLNDLYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    + L+ +  +   L++    L F   +  +        A
Sbjct: 241 DNATLSYQLATIKCDVELAESPQTLLKQTPDRDALMALYGKLAFKAWLTELLDGGTGVVA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E                                     +   ++  +        +  
Sbjct: 301 ADEQ--------------------------------AKASSMTSSNSASNAVSHAAVIPA 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D   W++KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 329 SPAAQIDRSQYQTILNEQDFNLWLEKLQQADLFAFDTETDSLDYMVANLVGVSFAVAEG- 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D           +      +++ LK   E+E+  K+G N+KYD  V+ 
Sbjct: 388 EAAYIPVAHDYLDAP---------QQLDRAWVIAQLKPLLEDENKAKVGQNLKYDASVIA 438

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDD 558

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 559 MLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 618

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 619 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 677

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 678 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 737

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 738 EGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 797

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 798 DKYFERYPGVMQYMEDTRSRAAEQGYVETIFGRRLHLPEITSRNGMRRKAAERAAINAPM 857

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 858 QGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIEIKVQELMESA 917

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL  +    +NW + +
Sbjct: 918 A----ELAVPLVADAGHGDNWDQAH 938


>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
 gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
          Length = 944

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/975 (42%), Positives = 584/975 (59%), Gaps = 50/975 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES-IASHFAVI 64
            L+LVDGS FI+RAF+A P L+RK DGLPV A++GFCNM+WKLL   + ++   +H AV+
Sbjct: 16  RLYLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMIWKLLVEMKTQADAPTHLAVV 75

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   TFRN++Y  YKA+RP  PE L+PQ PLVR AT+AFG+P +E+ G+EADD+IA Y
Sbjct: 76  FDHSEQTFRNKLYDQYKAHRPPPPEDLVPQFPLVREATKAFGVPCLELPGYEADDLIAAY 135

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                  G  VTI+S+DKDLMQLV P   + DT+K  +I IE VI+K+G+ P+K+V +QA
Sbjct: 136 ACKVRDMGGEVTIVSSDKDLMQLVGPRVFMLDTMKNARIGIEQVIEKFGVTPDKVVDVQA 195

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DN+PG PGIG KTA+ L+ EYG+L+ +L  A+ IKQ KRR+ ++EYA+  RLSR
Sbjct: 196 LCGDSVDNVPGAPGIGIKTASALINEYGDLDTLLARATEIKQPKRRDTLIEYADQIRLSR 255

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV L  D P+  PL+ L ++D +   L  FL+ +EF  L  RV    D  A +      
Sbjct: 256 ELVRLDCDTPLPSPLDELAVDDPDPAVLSEFLERMEFRTLARRVG---DGKAGSAGQAAA 312

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D    E +                                           +K +   I+
Sbjct: 313 DTPRPETRAP-----------------------------------------EKPNHGKID 331

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  + +   +  W+ K    G  +F   TD + +  +    ++++    +       
Sbjct: 332 VTAYACVRDLPALDAWIAKAYARGIVAFDTETDALSSATAGLCGVSLAVAPGEACYIPLG 391

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L +  + D T      ++ ++ LK   E+   LK+  N KYD  VL RYGI + 
Sbjct: 392 HCEAEGLQLEAAADLT--QIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSRYGIEVG 449

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEH 541
             +D ML+SYVL++G  +H +  +++  L +     K +  + K+      +  S+   +
Sbjct: 450 PIDDTMLISYVLEAGLHNHGMDELSKLGLDHEPIAFKSVAGTGKAQKSFKYVGLSEATCY 509

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E+++V L+LW  L+P+L  E L  VYE L++PM  V++ ME  G ++D + L+Q+S E
Sbjct: 510 AAEDADVTLRLWEHLKPRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERLRQLSNE 569

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
             + +  LE   + L+G  FNL SPKQ+G++LF ++   SG  T TG + T A  LE + 
Sbjct: 570 FGQRMAELEAEAHRLAGRPFNLGSPKQIGEVLFKEMGLASGRVTATGAFSTDASMLEDLA 629

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              + + + +L+WRQLSK+K TY D+L   I+++T RVHT +SLAST TGRL+S +PNL 
Sbjct: 630 AQGHELPRILLDWRQLSKLKGTYTDALVAAISEQTGRVHTSFSLASTTTGRLSSSDPNLM 689

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T+ G+KIRRAF++ P K LISADYSQIELR+LAHI  I  L + F   LDIH M 
Sbjct: 690 NIPIRTEEGRKIRRAFVAEPGKVLISADYSQIELRLLAHIGDIPQLKRAFREGLDIHAMT 749

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+E+FGV +E +  + RR AK INF IIYGIS F LA QL IP+ EA  YIK YF RFPG
Sbjct: 750 ASEMFGVPVEGMPSETRRRAKAINFGIIYGISAFGLANQLGIPQDEAGAYIKTYFERFPG 809

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  Y+++TK   R  G+V TIFGR+++   + S   + R   +RAAINAPIQGSAAD+ R
Sbjct: 810 IRAYMDRTKQAARSQGFVHTIFGRKVNIPAVKSKSQAERAFGDRAAINAPIQGSAADVMR 869

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           RAMI +  +L+   L  +MLLQ+HDELVFE PE E     +I    MEKA  P + + VP
Sbjct: 870 RAMIRMPGALKAEGLTARMLLQVHDELVFEAPEAEAEAVIRIAKAVMEKAAEPAVAISVP 929

Query: 962 LKVNIKVSNNWQEEN 976
           L V  + + NW + +
Sbjct: 930 LVVEARAAPNWDDAH 944


>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
 gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
          Length = 966

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 547/984 (55%), Gaps = 73/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 45  ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 99

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 100 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 159

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G AV I + DKD+ QLV+P   L +T+    +  E V  K+G+PPE ++   
Sbjct: 160 LAKEAAAAGRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFL 219

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  
Sbjct: 220 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAELSFRGAKTMAAKLEQNK 279

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  + L ++      L++  +  EF +  + +       + 
Sbjct: 280 DVAYLSYQLATIKTDVELELSHDRLEVQQPLADELLALFRQYEFKRWTSDLEAGKWLQS- 338

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         K  A  +E          +  +LS +                    
Sbjct: 339 ------------RGKPAAKPSETIVVEAEPEEEAVALSSE-------------------- 366

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++ + +Q W+++++T    +    TD++D   +  + I+ +T    
Sbjct: 367 ---------RYVTILDEEMLQAWIERIKTAPVVAVDTETDSLDNLTANLVGISFATEPGL 417

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E+E  +K+G N+K+D+ +L 
Sbjct: 418 -AAYIPVAHDYLDAPDQLPRD---------RVLELLKPLLEDESLVKVGQNLKFDRGILQ 467

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+LDS    HD+ S++ +WL +T    ++I    K+ +  ++I
Sbjct: 468 NYGIELRGIVFDTMLESYILDSVSGRHDMDSLSSRWLKHTTITFEQIAGKGKNQLTFNQI 527

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V LQL L + PKL   K  L+++E ++ P++ V+S++E  G++ID 
Sbjct: 528 DLEQAGRYAAEDADVTLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDP 587

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI+  L  LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 588 AVLHAHSQEIALKLAELEQKAHEIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 647

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K IL++R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 648 SEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGR 706

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 707 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFA 766

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E VS + RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 767 EGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 826

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +IN+  ++ R   ERAAINAP+
Sbjct: 827 DLYFERYPGVLEYMERTRKQAKEQGYVETLDGRRLYLPDINASNAARRAGAERAAINAPM 886

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   LE  +   KM++Q+HDELVFEV ++++   SQ I   ME   
Sbjct: 887 QGTAADIIKRAMIAVDGWLEKEQPRVKMIMQVHDELVFEVHKDDVEAVSQKIHELMEN-- 944

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              + L VPL V +    NW   +
Sbjct: 945 --SMQLDVPLLVEVGSGVNWDLAH 966


>gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37]
 gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37]
          Length = 934

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/979 (40%), Positives = 586/979 (59%), Gaps = 56/979 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS++I+RAF+A P L+RK DGLP+ A++GFCNML + ++++      +H A
Sbjct: 7   KGCHLHLIDGSAYIFRAFHALPPLTRKSDGLPIGAVSGFCNMLHRYVEDNTGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD  + TFRN++Y DYKANR  +PE L PQ+PL R +T+AF I   EI+GFEADDI+A
Sbjct: 67  VVFDKGSHTFRNDLYHDYKANREAMPEELRPQIPLTRESTEAFNIACKEIEGFEADDIMA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A + G  VTI+S+DKDLMQLV     + D +K ++ID E V++K+G+ PE++V +
Sbjct: 127 TLACMAREAGGRVTILSSDKDLMQLVGDGVEMLDPMKNKRIDREGVMEKFGVGPERVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRRE ++E      L
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAGEIKQPKRRETLIEKRAQIEL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L   + +   L+ L +++ +   L++FL  +EF  L  R+A             
Sbjct: 247 SKKLVQLDCGMDLPFTLDDLEVKEPDPDTLLAFLTKMEFRTLTKRIA------------- 293

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                             + + + +   P+    E       +P
Sbjct: 294 ----------------------------------ENAGVEAPAIPEPEQQETPDAAPDWP 319

Query: 363 -INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+  +Y  + +   + +W+ +   +G+ +    T  ++      + I+++    +    
Sbjct: 320 AIDPAAYECVQDMAALDRWIARAMDLGTVAVDTETTGLNEMLCDLVGISLAVAPGEACYI 379

Query: 422 FKVETIFIDLSVHTSQDSTGK-NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                         + D+  +     ++ L  LK   E+   +KIG N+KYD  +  RYG
Sbjct: 380 PLAHLAEDGGEGLFASDAKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRYG 439

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
           I +   +D MLMSY L  G   H + ++++++L++T    K++L + KS I  D++   +
Sbjct: 440 IEIAPIDDTMLMSYALHGGEHQHGMDTLSERYLAHTPIPIKDLLGTGKSQITFDRVPLDK 499

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E++++ L+L L  +P+L    +  VYE L++P++ V+  ME+ GI++D+  L +
Sbjct: 500 ATGYAAEDADITLRLALTFKPQLHRAHVTRVYETLERPLVPVLKAMEMRGIKVDRATLSR 559

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S + ++ +  LEE I+ L+GEKFN+ SP QLGDILF K+  P G + K G++ T A  L
Sbjct: 560 MSGKFAQKMAELEEEIHALAGEKFNVGSPAQLGDILFEKMSLPGGKRGKNGKYSTPADVL 619

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +   ++ +   +L+WRQLSK+KSTY D+L  HIN  T RVHT YS+A   TGRLAS +
Sbjct: 620 EDL-ATEHDLPGRVLDWRQLSKLKSTYTDALQEHINPDTGRVHTSYSIAGANTGRLASND 678

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++++ G++IR AF++P    L+S DYSQIELRILAH+A I  L Q F + LDI
Sbjct: 679 PNLQNIPVRSEEGRRIREAFVAPEGHTLVSLDYSQIELRILAHMADIDALKQAFRDGLDI 738

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H M A+E+F V +++++P +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF 
Sbjct: 739 HAMTASEMFNVPLDEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFE 798

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RFPGI +Y++ T  F  ++  VET+FGR IH  EI + K       +RAAINAPIQG+AA
Sbjct: 799 RFPGIKQYMDDTVKFANEHKRVETMFGRVIHTPEIGA-KGPRAGFAKRAAINAPIQGTAA 857

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI RRAM+ +  ++   KL  KMLLQ+HDEL+FEV +        +    M+ AC P + 
Sbjct: 858 DIIRRAMVRMPDAI--AKLPAKMLLQVHDELIFEVEDGAAGDLIDVAREVMQNACDPVVK 915

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V+     NW E +
Sbjct: 916 LDVPLVVDAGQGANWAEAH 934


>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
          Length = 936

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/986 (35%), Positives = 548/986 (55%), Gaps = 74/986 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 12  ENPFILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PSHIAV 66

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK+ RP +P+ L  Q+  +     A G+P + + G EADD+I T
Sbjct: 67  VFDAKGKTFRDELFEQYKSQRPPMPDDLREQIAPLHEMVAAMGLPLLVVAGVEADDVIGT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K+G  V I + DKD+ QLV+    L +T+    +    V  K+G+PPE MV   
Sbjct: 127 LALQASKKGLPVLISTGDKDMAQLVTADITLINTMTNTLLGPAEVADKYGVPPELMVDFL 186

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+L  I  + S I        K   E + ++ 
Sbjct: 187 ALMGDSSDNIPGVPGVGEKTALALLQGIGDLATIYQDLSAIAPLGFRGSKTLAEKMAQHK 246

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++T+V +T   + L+++  +  +L +     EF + +  +         
Sbjct: 247 DIAFLSYKLATIKTNVDLTTDYDGLVMQAPDIEKLHALFSRYEFKRWLTDLQNGGWLTKK 306

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +                        ++  +  S   +  + +++E             
Sbjct: 307 TGQ-------------------SPTTVSVNNNDISLAKEPVAALSTE------------- 334

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+   D+ QWV+KL++    +F   TD++D   +  I ++ +    K
Sbjct: 335 ---------HYQTILTKADLMQWVEKLQSAKCFAFDTETDSLDTLSAHLIGLSFAIEKGK 385

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D           +     E+L+ +K    +++  KIG N+K+D  V+ 
Sbjct: 386 G-AYLPLGHNYLDAP---------QQLPLDEVLAAIKPILVDKNIQKIGQNLKFDYGVMA 435

Query: 478 RYGISMRGF-EDIMLMSYVLDS--GRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
            Y I ++    D ML SYVL+S  G   HD+ S+AQ+ L++     +EI    K+ +  +
Sbjct: 436 NYDIELKNMAFDTMLESYVLNSVAGLGRHDMDSLAQRHLNHKTITFEEIAGKGKNQLTFN 495

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q   +A E+++V L L   L P+L  E KL  ++++++ P++ V+++ME  G+ I
Sbjct: 496 QIPLEQASTYAAEDADVTLLLHQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVGVLI 555

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D + L + S EI+  L+ +E+  Y ++ ++FNL+SPKQL  ILF KL+ P   KT +G  
Sbjct: 556 DANKLAKQSREIASRLMEIEKEAYAIAEQEFNLASPKQLQAILFEKLQLPVVKKTPSGAP 615

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    + + K IL+ R LSK+KSTY D LP  I+ +T+RVHT Y  A T T
Sbjct: 616 STNEEVLEELAFS-HELPKIILQHRSLSKLKSTYTDKLPMMIHPKTKRVHTSYHQAVTAT 674

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++T+ G++IR+AFI+    K+++ADYSQIELRI+AH+++   L   
Sbjct: 675 GRLSSRDPNLQNIPVRTEEGRRIRQAFIAREGYKIVAADYSQIELRIMAHLSQDKGLLDA 734

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+FGV +  V+ + RR AK INF +IYG+S F L+ QL I R +A  
Sbjct: 735 FAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINFGLIYGMSAFGLSRQLGITRGQAQH 794

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+ RYF R+PG+  Y+E+T+    + GYVET+ GRR++  +INS  +  R  +ER AINA
Sbjct: 795 YMDRYFERYPGVLSYMERTRKQAAEQGYVETLAGRRLYLPDINSRNAMRRKASEREAINA 854

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI ++AMI++ K +E  K    ML+Q+HDELVFEV E  +  + Q I   ME+
Sbjct: 855 PMQGTAADIIKKAMIALDKWIESVKPDLYMLMQVHDELVFEVKESAVDRSQQKIRQLMEQ 914

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                + L VPLKV++ + +NW E +
Sbjct: 915 ----SMQLTVPLKVDVGIGDNWDEAH 936


>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
 gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
          Length = 950

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/984 (36%), Positives = 535/984 (54%), Gaps = 68/984 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRAF+A P L+   +G P  A+ G  NML  L+   +     SH AV
Sbjct: 24  ENPLVLVDGSSYLYRAFHAFPPLTN-SNGEPTGAMYGVLNMLKSLISQVQ----PSHIAV 78

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T
Sbjct: 79  VFDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D   VI+K+GIPPE ++   
Sbjct: 139 LARQASQNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYL 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L   
Sbjct: 199 ALMGDSSDNIPGVSGVGEKTALRLLQGIGSMAQIYANLDKVAELPIRGAKKLGEKLLAEK 258

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV +    + L L D +   LI +    EF + +  V    +    
Sbjct: 259 DMADLSYALATIKTDVALAFSPQELALGDSDNDALIEYFGRYEFKRWLGEVMNGTNSVTQ 318

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             + V   IN  +   +    E   + ++K                              
Sbjct: 319 PTQSV--KINPYQATPVVKTDESAVENSVK------------------------------ 346

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
              + I+   Y  I+   D+ +WV+KL      +    TD +D   +  + ++ +  + +
Sbjct: 347 ---FKIDRSRYENILTEADLARWVEKLSAEKLIAVDTETDGLDYMSANLVGVSFALENGE 403

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                        L +H       K       L+ LK   EN +  K+G N+K+D  +  
Sbjct: 404 AAY----------LPLHLDYLGAPKTLEKSTALAALKPILENPNIGKVGQNLKFDMTIFA 453

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R GI +RG   D ML+SY LDS    H++  +A+++L +     ++I    K+ +  ++I
Sbjct: 454 RNGIELRGIEFDTMLLSYTLDST-GRHNMDDLAKRYLGHQTIGFEDIAGKGKNQLTFNQI 512

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V ++L  +L  KL     L+ +Y+ ++ P++ V+S+ME  G+ ID 
Sbjct: 513 PLEQAGEYAAEDADVTMKLQQVLWGKLQSQPSLVELYQSIELPLLGVLSRMERCGVLIDS 572

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L   S EI++ L +LE   ++L+G+ FNL+S KQL +ILF KL  P   KT  G   T
Sbjct: 573 DALFLQSNEITERLTALEMQAHELAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 632

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
               LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGR
Sbjct: 633 NEDVLEELAYS-HELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGR 691

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+    K+I+ADYSQIELRI+AH++    L   F 
Sbjct: 692 LSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDAGLINAFA 751

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAEIFG+ +E+V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+
Sbjct: 752 QGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGISRADAQRYM 811

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  ++   +   +  GYVET+FGRR++  EINS  +  R   ER AINAP+
Sbjct: 812 DLYFQRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAERVAINAPM 871

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI + + +        M++Q+HDELVFEV  E+I   S +I   ME A 
Sbjct: 872 QGTAADIIKCAMIKLDE-ITRDDPDIHMIMQVHDELVFEVRSEKIAFFSDLIKQHMEAAA 930

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V++ V  NW E +
Sbjct: 931 ----ELVVPLIVDVGVGENWDEAH 950


>gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus influenzae 10810]
          Length = 935

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/983 (36%), Positives = 546/983 (55%), Gaps = 65/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEHYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NAALSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVMNGSDSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S + +           ++  
Sbjct: 302 TEQ-----------------------PVKINQYQATSPAQSSVGNSA---------VENT 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            +  I+   Y  ++   D+ +W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 330 PKIQIDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LENGE 388

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 389 AAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFAR 439

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I 
Sbjct: 440 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIP 498

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 499 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 558

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 559 ALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 618

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 619 EEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 677

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 678 SSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 737

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+ 
Sbjct: 738 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMD 797

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 798 LYFQRYPSVQQFMTDIREKAKTQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 857

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 858 GTAADIIKRAMIKLDEVIH-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHMESAA- 915

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 916 ---ELVVPLIVEVGVGQNWDEAH 935


>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
 gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
          Length = 929

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/985 (36%), Positives = 543/985 (55%), Gaps = 73/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V++K+GIPP  M+   
Sbjct: 121 LALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKDIYANLDKVATLTFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L +E      L++  K  EF + I  +         
Sbjct: 241 EMALLSYQLATIKTDVELELNSDQLTVEQPAVEELLALFKHYEFKRWITDLEDGKWLQGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P    +   +++    E                                        
Sbjct: 301 KGNPSTKKVAAVQDEPAVAE---------------------------------------- 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   +++D Y  I++ +    W++KL+     +F + TD++D   +  I I+ +T    
Sbjct: 321 -AASVLSSDGYVTILDEETFTSWLKKLQHSELFAFDLETDSLDTLSANIIGISFATAPG- 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D           +     ++L+ LK   E+    K+G N+K+D+ VL 
Sbjct: 379 EAAYLPVAHDYLDAP---------EQLDRSDVLARLKPLLEDPQSQKVGQNLKFDRGVLK 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I + G   D ML SY L+S    HD+ ++A +WL +     +EI    K+ +  ++I
Sbjct: 430 RYDIELLGIRFDTMLESYALNSVAGRHDMDTLASRWLQHKTVTFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L  E+   +V+E+++ P++ V+S++E  G+ IDQ
Sbjct: 490 ALEQAAHYAAEDADVTLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQ 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+   L  LE   ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 550 SILAVHSQELGSRLAELELKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R L+K+KSTY D LP  IN  + RVHT Y    T TGR
Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLSQDKGLLSAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIHR  AAE+FGV ++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 729 SEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T+    Q GYV T+ GRR++  +IN+  +  R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   LE       KM++Q+HDELVFEV  + +  A   I   ME  
Sbjct: 849 QGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQVHDELVFEVQADAVEAACAQIRALME-- 906

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL+V+I V +NW + +
Sbjct: 907 --GSMKLDVPLRVDIGVGDNWDQAH 929


>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
          Length = 929

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 542/985 (55%), Gaps = 73/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFDAYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V++K+GIPP  M+   
Sbjct: 121 LALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G ++ I  N  ++        K     + +  
Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKEIYDNLDKVATLTFRGAKTMAARLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  + L +E+     L++  K  EF + I  +         
Sbjct: 241 EMALLSYQLATIKTDVELELTSDQLTVEEPAVEELLALFKHYEFKRWITDLEDGKWLQGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P        +N+    E                                        
Sbjct: 301 KGSPSTKKKAAVQNEPAVAE---------------------------------------- 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   +++D Y  I++      W++KL+     +F + TD++D   +  I ++ +T    
Sbjct: 321 -ATSMLSSDGYVTILDEDTFTSWLKKLQDSELFAFDLETDSLDTLSANIIGLSFATAPG- 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D           +     ++L+ LK   E+    K+G N+K+D+ VL 
Sbjct: 379 EAAYLPVAHDYLDAP---------EQLDRSDVLARLKPLLEDPQAQKVGQNLKFDRGVLK 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I ++G   D ML SY L+S    HD+ ++A +WL++     +EI    K+ +  ++I
Sbjct: 430 RYDIELQGIRFDTMLESYALNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL + + P+L  E+   +V+E+++ P++ V+S++E  G+ ID 
Sbjct: 490 ALEQAAHYAAEDADVTLQLHVKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+   L  LE   ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 550 GILATHSQELGSRLAELELKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R L+K+KSTY D LP  IN  + RVHT Y    T TGR
Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGLLSAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIHR  AAE+FGV+++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 729 SEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T+    Q GYV T+ GRR++  +I +  +  R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V + LE       KM++Q+HDELVFEV  + +  A   I   ME  
Sbjct: 849 QGTAADIIKRAMIAVDRWLEQQPSPEVKMIMQVHDELVFEVHADAVEAACAQIRALME-- 906

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL+V+I V +NW + +
Sbjct: 907 --GSMKLDVPLRVDIGVGDNWDQAH 929


>gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501]
 gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501]
          Length = 931

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/986 (36%), Positives = 535/986 (54%), Gaps = 85/986 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    R++   S FA
Sbjct: 19  SQAPLVLVDGSSYLYRAFHALPPLTT-STGKPTGAVKGVLNMLLSL----RRQYPDSPFA 73

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+ ++ +YK++RP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 74  VVFDAKGPTFRDALFENYKSHRPPMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIG 133

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T        G  V I + DKD+ QLV P   L +T+     DIE V  K+G+ PE ++  
Sbjct: 134 TLARQCAALGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDIEGVKAKFGVGPELIIDF 193

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL    G L+ +  +  ++        K     + E
Sbjct: 194 LALMGDKVDNIPGVPGVGEKTACGLLNGIPGGLKGLYEHLDQVAGLPIRGAKSLGAKLEE 253

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + + A +S +L  ++ DV + + +  L+  + +   LI+  + LEF + ++ +       
Sbjct: 254 HRDAAFMSYELATIKIDVALDVEVGDLMPGEPHREALIALYRELEFKQWLDELLREAKAA 313

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N E         + +G +I+ E                                    
Sbjct: 314 GENCE--------VQPEGCSIQAEA----------------------------------- 330

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  ++   D ++W+ +L+     +F   T ++DA  ++ + ++ +   
Sbjct: 331 -----------QYETLLEQADFERWLARLKAAECFAFDTETTSLDAQRAELVGVSFAVEP 379

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +      +   ++ +      D+         +LS LK   E+    KI  + KYD  V
Sbjct: 380 GQ-AAYVPLRHSYMGVPQQLELDA---------VLSALKPLLEDPAKTKICQHGKYDMNV 429

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPID 531
           L  YGI MRG   D ML SYVLD+  + HD+ S+A K+L       ++I       +  D
Sbjct: 430 LMHYGIEMRGMAFDTMLESYVLDATATRHDMDSLALKYLGRGTIRFEDIAGKGAKQLTFD 489

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I+  Q   +A E+++V L+L   L  KL     LL V   ++ P++ V++++E  G  +
Sbjct: 490 QIAIEQAGPYAAEDADVTLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALV 549

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL Q S E+   L+ LE   +D++GE+FNL SPKQL  IL+ KL  P  +KT  GQ 
Sbjct: 550 DAQLLGQQSVELGDKLVQLEREAFDIAGEEFNLGSPKQLCAILYDKLGCPVISKTAGGQP 609

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    L ++   D P+ K I++ R LSK+K TY D LP  IN RT R+HT Y  A T T
Sbjct: 610 STAESVLAELAEQDYPLPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTAT 669

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T  G++IR+AF++ P  KL++ADYSQIELRI+AH+A+   L   
Sbjct: 670 GRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHA 729

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N LD+HR  AAE+FGV +E+VS   RR AK INF +IYG+S F LA Q+ + R EA +
Sbjct: 730 FQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDVGRKEAQE 789

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+  Y+E+T+    + GYVET+FGRR++  EINS   ++R   ER AINA
Sbjct: 790 YIDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTAINA 849

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI +RAMI+V   L+D  L  +++LQ+HDELV EV E+ +    + I   M  
Sbjct: 850 PMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELVLEVREDLVEQVREAICPLMSG 909

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A      L VPL V   V NNW E +
Sbjct: 910 AA----QLDVPLLVEAGVGNNWDEAH 931


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 923

 Score =  982 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/985 (35%), Positives = 538/985 (54%), Gaps = 79/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRA++A P  +   DG P  A+ G  NML  +L+    E    H AV
Sbjct: 6   ENPLILIDGSSYLYRAYHAAPNFTN-SDGEPTGAVYGVVNMLRSMLRQFSTE----HIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR++++P+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMFPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV     L +T+ +  +D   V+ K+GI PE ++   
Sbjct: 121 LATQASQQGMPVLISTGDKDMAQLVDQNITLINTMTDVVMDPAGVVDKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ +  N   I        K   + +L+  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDALYDNLDDIAPLGFRGSKTMAKKLLDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +S KL  ++ DV + +  + L     +   L      L+F + +  +    D    
Sbjct: 241 EAAYMSYKLATIKLDVELDVKPDELRKGVPDTDALTELFGKLQFRRWLTEMLEGSD---- 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G  +  E   +   +    +                         
Sbjct: 297 ---------------GRIVADEKSGNAPAEKKAVAP------------------------ 317

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I++      W+++L+   + +F   TD +D   +  + ++ +  + K
Sbjct: 318 ----TIDRSGYEIILDEAAFNVWLEQLKAAKAFAFDTETDGLDYMTANVVGVSFAIEEGK 373

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+ +  KIG N+K+D  ++ 
Sbjct: 374 -AAYVPVAHDYLDAPAQLDRD---------WVLAQLKPLLEDPNQAKIGQNLKFDASIVA 423

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L +     +EI    K  +  ++I
Sbjct: 424 RYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEIAGKGKKQLTFNQI 483

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             +Q   +A E++++ L+L   L PK+   EKL HV+E ++ P++ V+S+ME TG+ +D 
Sbjct: 484 DLAQAGPYAAEDADITLRLHNALYPKVEADEKLKHVFETIEMPLVPVLSRMERTGVYVDS 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  ++++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 544 MLLGAQSTEIAARLDELEKKAFEIADQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 604 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++    K+++ DYSQIELRI+AH++    L   F 
Sbjct: 663 LSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFR 722

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI G++IE+VS + RR AK INF +IYG+S F LA QL + R+EA DY+
Sbjct: 723 HGKDIHAATAAEILGLDIEQVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQDYM 782

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+N   + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 783 NVYFERYPGVLEYMESTRNTASEKGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI + AMI+V   ++   +   ++L+Q+HDELVFEV E  + + +  +   ME+A
Sbjct: 843 QGTAADIIKLAMIAVDNWVQQQPQDEVRLLMQVHDELVFEVKESALESVTAEVKALMEQA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL  +    +NW + +
Sbjct: 903 A----TLDVPLIADAGFGDNWDQAH 923


>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
 gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
          Length = 937

 Score =  982 bits (2539), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/985 (36%), Positives = 537/985 (54%), Gaps = 65/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPGIPG+G KTA  LLQ  G++E +  N   I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGIPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A +S +L  ++ DV +    E L+    N   LI     L F   +N +         
Sbjct: 241 DNADMSYQLATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNELL-------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E     +E +     T   +  SS S  TS +                
Sbjct: 293 ------------EGGSGVVEADERSAATGAGAVRSSASAATSTVE-------------MN 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+  +Y  I++      W++KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 328 TSAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDTETDSLDYMVANLVGLSFATEEGV 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 388 -AAYVPVAHDYLDAPQQLDRD---------WVLEQLKPILEDDTQAKVGQNLKYDMSVLA 437

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 438 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 497

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +YE ++ P+I V+S++E TG+ ID 
Sbjct: 498 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDD 557

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 558 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPST 617

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 618 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 676

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++    K+++ DYSQIELRI+AH++    L + F+
Sbjct: 677 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 736

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV I++V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 737 QGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 796

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + G+VETI+GRR+H  EI S     R   ERAAINAP+
Sbjct: 797 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 856

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 857 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVQESALAEIESKVQQLMESA 916

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L VPL       +NW + +
Sbjct: 917 A----DLEVPLVAEAGHGDNWDQAH 937


>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
 gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
          Length = 937

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/982 (36%), Positives = 539/982 (54%), Gaps = 86/982 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRA++A P L+    G P  A+ G  NML +L    RK+   S  AV+F
Sbjct: 31  PLVLVDGSSYLYRAYHALPPLTNSK-GQPTGAVKGVVNMLRRL----RKDYPQSPIAVVF 85

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E++ +YKANRP +PE L PQ+  +    QA G+P + I+G EADD+I T  
Sbjct: 86  DAKGKTFRDELFAEYKANRPPMPEDLRPQVQPIHDIVQAMGLPLLVIEGVEADDVIGTLA 145

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A ++   V I + DKD+ QLV+    L +T+ +  +DI  V  K+G  PE M+   AL
Sbjct: 146 RQATEQKRDVIISTGDKDMAQLVNEHVTLVNTMTDSVLDIPGVHAKYGFGPELMIDYLAL 205

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAET 239
            GD +DNIPG+PG+G KTA  L+Q  G+L+ I  +  ++        K   E ++E+ + 
Sbjct: 206 MGDKVDNIPGVPGVGEKTAQGLIQGIGSLDAIYTDLEKVRSLSFRGAKTMPEKLIEHRDM 265

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +L  ++TDV + +  E L  +  +  +L    + +EF   I  ++ T        
Sbjct: 266 AYLSYQLATIKTDVELPMGPEALHNQAADNAKLRVLFEEMEFKSWIAELSNTES------ 319

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                          AIE +   D   KT+                              
Sbjct: 320 ---------------AIEIDSQVDVPTKTA------------------------------ 334

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I    +   W+ +L+     SF   T ++D   ++ + ++++T      
Sbjct: 335 ----IEKHYDIIFTESEFATWLARLQAATEFSFDTETTSLDVMEARIVGVSVATEPGV-A 389

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++            +    + +L+ LK   E+EH +KIG NIKYD+ VL  Y
Sbjct: 390 AYIPCGHDYMGAP---------EQLSLEWVLNQLKPLLEDEHKIKIGQNIKYDRSVLLNY 440

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
           GI++RG   D ML SYV +S  S H++  +AQ +L Y     +E+       +  +++  
Sbjct: 441 GITLRGIKYDTMLESYVWNSVASRHNMDDLAQTYLDYKTVTFEELAGKGVKQLTFNQLKI 500

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                +A E++++ L+L     P+L  +  L  V+  ++ P++ V+S +E  G  +D  L
Sbjct: 501 EDAGHYAAEDADITLRLHQFFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAKL 560

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L Q S E+ + ++ LE   Y+L+G++FNLSSPKQLG ILF +L+ P   KT TG    TA
Sbjct: 561 LGQHSIELGERMVQLERKAYELAGQEFNLSSPKQLGVILFEQLQLPVIKKTPTGTPS-TA 619

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +++ Q    D P+ K I+E+R ++K+KSTY D LP  IN  T R+HT Y  A   TGRL+
Sbjct: 620 EEVLQELALDYPLPKVIMEYRAMAKLKSTYTDKLPLMINPATGRIHTNYHQAVAATGRLS 679

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPIKTD G++IR+AFI+P   KL++ADYSQIELRI+AH++  + L   FE  
Sbjct: 680 SQDPNLQNIPIKTDEGRRIRQAFIAPAGYKLVAADYSQIELRIMAHLSSDSGLLSAFEKG 739

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LD+HR  AAE+FGV ++ V+P+MRR AK INF +IYG+S F LA QL + R+EA  YI R
Sbjct: 740 LDVHRATAAEVFGVALDSVTPEMRRSAKAINFGLIYGMSAFGLAKQLHVGRNEAQQYIDR 799

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y+   +    + GYVET+FGRR++  +IN+   + +   ER AINAP+QG
Sbjct: 800 YFERYPGVQRYMNNIRAQAHEQGYVETLFGRRLYLPDINAKNKNFQLAAERTAINAPMQG 859

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI+V   L +  L  K+++Q+HDELV EV E  +      +V  M  A   
Sbjct: 860 TAADIIKTAMIAVDNWLVEAGLDAKLIMQVHDELVLEVAESCLDEVCTGVVARMSAAA-- 917

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL V+  V NNW E +
Sbjct: 918 --RLNVPLIVDAGVGNNWDEAH 937


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/985 (36%), Positives = 544/985 (55%), Gaps = 74/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GKPTGAMYGVLNMLRSLLLQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEAYKSHRPPMPDDLRAQIEPLHNMVRAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K+G  V I + DKD+ QLV+P   L +T+    +  + V++K+GIPPE ++   
Sbjct: 121 LALEAGKKGKPVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGIKDIYANLDKVADLTFRGAKTMATKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L + +     L+   +  EF + I  +         
Sbjct: 241 EMALLSYQLATIKTDVELDLTSEQLTVNEPAVEELLGLFREYEFKRWITDLEEGKWLQGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P          K +  + E   +TT                                
Sbjct: 301 KSHPAA-------QKALVEQVEEQVETT-------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ + Y  I++ +  + W+++L+T    +F + TD++D   +  + I+ +    K
Sbjct: 322 ---STLSAEGYVTILDEETFESWLKQLKTSSLFAFDLETDSLDTLSANIVGISFAIEPGK 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      ++S         +L  LK   E+   LK+G N+KYD+ VL 
Sbjct: 379 -AAYLPVAHDYLDAPAQLDRNS---------VLERLKPLLEDPALLKVGQNLKYDRGVLK 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I ++G   D ML SY L S  S HD+ +++ +WL++     +EI    K  +  ++I
Sbjct: 429 NYDIELQGIKFDTMLESYALSSVGSRHDMDTLSSRWLNHKTVSFEEIAGKGKKQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V LQL L + P+L  E+    V+E ++ P++ V+S++E  G+ IDQ
Sbjct: 489 DLEQAAHYAAEDADVTLQLHLKMWPELEKEQGPKEVFENIEMPLLTVISRIERNGVLIDQ 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 549 GILAAHSKELTIRLAELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 609 SEEVLAELAL-DYPLPKVILENRGLAKLKSTYTDKLPLMINPITGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+    K+++ADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSTDPNLQNIPVRNEEGRRIRQAFIASKGHKIVAADYSQIELRIMAHLSQDKGLLSAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +DIHR  AAE+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 728 EGMDIHRATAAEVFGMALDKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+    + GYV T+ GRR++  +IN+  +  R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLEYMESTRQQAAEKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI+V   L        KM++Q+HDELVFEV   E+  A+  I   ME  
Sbjct: 848 QGTAADIIKKAMIAVDGWLTPQSAPDVKMIMQVHDELVFEVKTSEVEAATAKIRDLMEN- 906

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL+V++ V +NW++ +
Sbjct: 907 ---SMKLDVPLQVDVGVGDNWEQAH 928


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score =  981 bits (2537), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/981 (42%), Positives = 593/981 (60%), Gaps = 72/981 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             +H++LVDGS +I+RA++A P L+R  DG PV A+ GFCNMLWKLL++ + E   +H A
Sbjct: 9   SSSHVYLVDGSGYIFRAYHALPPLTR-SDGTPVGAVQGFCNMLWKLLEDLKGEDQPTHLA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+ + TFRNEIY  YKANRP +PE L+PQ  L+R ATQAF +P IE++GFEADD+IA
Sbjct: 68  VIFDHSSKTFRNEIYDQYKANRPDLPEDLVPQFSLIREATQAFELPCIEMEGFEADDLIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY  +A  +G  VT+ S+DKDLMQLV+    L D +K ++I  + VI+K+G+ P+K+V +
Sbjct: 128 TYARLAADKGARVTVASSDKDLMQLVNDQVTLLDPMKSKRIGHDEVIEKFGVAPDKVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++E AE AR+
Sbjct: 188 QSLAGDSVDNVPGVPGIGIKTAAQLIHEYGDLDTLLERAGEIKQPKRREKLIENAENARV 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV L+ DVPIT  L+     D +  +L+ FLK++EF  L  R               
Sbjct: 248 SRLLVTLKPDVPITDELDVFGAADPDAEKLVGFLKSMEFRTLTRR--------------- 292

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                  ++      ++D+T                    +  P
Sbjct: 293 -----------------------VEEGLGGPVADETG------------------DATAP 311

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++   Y  +   + +++W++K +     +  + TD + A  S+ + ++++T   +     
Sbjct: 312 VDRSKYETVQTVEALEKWIEKAKHARVIAVDVETDALSAVASRLVGVSLATAPNE----- 366

Query: 423 KVETIFIDLSVHTSQDSTG----KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +I L       + G          E L  LK   EN+  LK+G N KYD  V  R
Sbjct: 367 ---ACYIPLGHEGGDLADGGMKPDQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQR 423

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
           YG+ +  ++D ML+SYV  +G  +H +  +A++ L +T    KE+  + KS     +I  
Sbjct: 424 YGVRVAPYDDTMLISYVQAAGLHNHGMDELAERHLGHTCISFKEVCGTGKSQKRFSEIDL 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               E+A E++++ L+LW LL+  L  + L  VYE L++P+  V++ ME+ G+++D   L
Sbjct: 484 KTATEYAAEDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++S++ ++ +   EE  + L+G KFNL SPKQ+G+ILF ++  P G KTK+G W T A 
Sbjct: 544 SRLSSDFAQKMAEAEETAHKLAGTKFNLGSPKQIGEILFGEMGLPGGKKTKSGAWSTDAA 603

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++    + + K +L WRQ SK+KSTY+D+L + IN  T RVHT +SLA+T TGRL+S
Sbjct: 604 VLDELAAQGHDLPKALLTWRQFSKLKSTYSDALKDAINPNTGRVHTSFSLAATTTGRLSS 663

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIPI+T+ G+KIR AF + P   +++ADYSQIELR+LAHIA +  L Q F    
Sbjct: 664 SEPNLQNIPIRTEEGRKIREAFTAEPGHVIVAADYSQIELRLLAHIADVEALKQAFREGQ 723

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + A+E+FGV +E + P  RR+AK INF IIYGIS F LA  L I R EA  YI  Y
Sbjct: 724 DIHALTASEMFGVPLENMDPTTRRNAKAINFGIIYGISAFGLANNLGIGRDEAKSYIDSY 783

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F +FPGI +Y++  K+  +  G V TIFGRRIH   I     S+R   ER AINAPIQG+
Sbjct: 784 FKKFPGIKDYMDAMKDEAKAKGCVSTIFGRRIHLPGIKDKNPSVRQFTERQAINAPIQGA 843

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI RRAM+ +  +L D  L T+MLLQ+HDELVFE PE E     +++   M  A LP 
Sbjct: 844 AADIIRRAMVRMPGALSDAGLKTRMLLQVHDELVFEAPESEADQVIKLVTEVMSTAALPA 903

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
            NL VPL+V  K ++ W + +
Sbjct: 904 QNLSVPLEVEAKAASTWGQAH 924


>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
 gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
          Length = 928

 Score =  981 bits (2537), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/988 (36%), Positives = 532/988 (53%), Gaps = 77/988 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     + LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+    K+   S 
Sbjct: 6   MANTPPIVLVDGSSYLYRAFHALPPLTTSK-GNPTGAVKGVLNMLKSLI----KQYPQSP 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR++IY +YKA+RP +P+ L PQ+  +    +A G+P + I+G EADD+
Sbjct: 61  MAVVFDAKGKTFRDDIYAEYKAHRPPMPDDLRPQVEPLHDCIRALGLPLLCIEGVEADDV 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A + G    I + DKD+ QLV+    L +T+K E +D+  V +K+GIPP  ++
Sbjct: 121 IGTLARQATEAGRDAVISTGDKDMAQLVNAHITLVNTMKGETLDVAGVEEKFGIPPSLVI 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRI------KQKKRRENI 233
              AL GD +DNIPG+PG+G KTA  LLQ   G L+ I  +  R+        K   + +
Sbjct: 181 DFLALMGDKVDNIPGVPGVGEKTALGLLQGMQGGLDTIYADLERVTTLSFRGAKTMPKKL 240

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E A LS +L  ++TD  + + L+ L +   +   L +    LEF   +N +    D
Sbjct: 241 EANREQAFLSYQLATIKTDCELPVGLDDLDIAHPDREALKTLYTELEFKNWLNELLEGRD 300

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
               ++             G     +  +     T++ +S +D                 
Sbjct: 301 EGVDDV-------------GSGDAVDAAQGPVASTAEATSRTD----------------- 330

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                            IV  +    W+ +L       F + T +++   +  + I +S 
Sbjct: 331 ---------------HVIVTREAFDAWLARLGEADIFCFDLETTSLNYMEADIVGIGLS- 374

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           LD  +     V   ++D           +      +L+ LK  +E+    KIG N+KYD 
Sbjct: 375 LDAGEAAYIPVAHRYLDAP---------EQLDRASVLAALKPLWEDPAKAKIGQNLKYDI 425

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIP 529
            VL RY I + G  ED ML SYVL++  + HD+ S+A K+L     + +EI       + 
Sbjct: 426 SVLARYDIEVAGRLEDTMLASYVLNATATRHDMDSLALKYLGEKTISFEEIAGKGAKQLT 485

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+ ++ L+L   LRP++  E  L  V + ++ P++ V+S+ME  G+
Sbjct: 486 FDQIALEQAAPYACEDVDITLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGV 545

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D + L   S E+ K L  LE   Y+L+G +FNL SPKQLG+ILF +LK P   KT  G
Sbjct: 546 ALDAERLHAQSRELEKRLRELETRAYELAGREFNLGSPKQLGEILFDELKIPVIKKTPKG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LE++   D P+ K I+E R  +K+KSTY D LP  +N  T+R+HT Y  A T
Sbjct: 606 APSTAEAVLEELAL-DYPLPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVT 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T+ G+KIR+AF++ P  ++++ADYSQIELRI+AH++    L 
Sbjct: 665 ATGRLSSSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLL 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH   AAE+FGV ++ VS + RR AK INF +IYG+S + L  QL I R++A
Sbjct: 725 DAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  ++E+ +     +GYVET+FGRR++  EIN+   + R   ER AI
Sbjct: 785 QTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAERTAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI + AMI V + L +      M++Q+HDELVFEV E ++   +  +   M
Sbjct: 845 NAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEAQVDAFTDAVRQRM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A      L VPL V     +NW E +
Sbjct: 905 EGAA----KLDVPLTVEANAGDNWDEAH 928


>gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510]
 gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510]
          Length = 972

 Score =  981 bits (2536), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/984 (40%), Positives = 595/984 (60%), Gaps = 53/984 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVDGS FI+RAF+A P+L+R  DG PVNA+ GF NML KLL +++ E+     AV+FD
Sbjct: 28  LYLVDGSGFIFRAFHALPMLTR-PDGTPVNAVLGFSNMLLKLLADAKAEA----VAVVFD 82

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              + FRNE YPDYKA+RP+ PE L PQ  L+R AT+AF +P +E++G+EADD+IATY  
Sbjct: 83  SKRLNFRNEFYPDYKAHRPEPPEELKPQFALIREATEAFCLPCLELEGYEADDLIATYAR 142

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +A++ G  VTI+S+DKDLMQLV P   ++D +K + I  + V +K+G+PPEK+V +QAL 
Sbjct: 143 LAQEAGRPVTIVSSDKDLMQLVRPGIGMFDPMKNKAIGPDEVFEKFGVPPEKVVDVQALA 202

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG+PGIG KTAA L+ EYG+LE +L NA +IKQ  RR+ ++E+AE AR+SR+L
Sbjct: 203 GDSVDNVPGVPGIGVKTAAQLITEYGDLEALLANADKIKQPARRQKLIEFAEQARISRRL 262

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L    P   PL+ L + + +  +LI FLKA  F  +++RV      D           
Sbjct: 263 VRLDDRAPPPKPLDELRVREPDHRKLIDFLKAQGFRSIVSRVEMEMQKDGR--------- 313

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                    I         + TS   S   +    +     Q   + +    +   +   
Sbjct: 314 ---------IADGAGSAPVVTTSATPSAPPENVSTDGTADTQDHPVRK----TVLHVPEV 360

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  + +   +++WV++    G  +    TD++    +  + +++ST             
Sbjct: 361 RYELVQDADALRRWVERARETGRLAVDTETDSLTPATATLVGVSLSTEPGI--------A 412

Query: 427 IFIDLSVHTSQDSTGKNTLTKEI-----------LSYLKKFFENEHFLKIGHNIKYDKLV 475
            +I L+      +                     ++ LK   E+   LKIGHN K+D  +
Sbjct: 413 CYIPLAHKAEGSAAAGQLDFDAPPPPAQIPAAEAMAILKDVLEDPSVLKIGHNFKFDHQL 472

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
             R GI++   +D ML+SYVL+ G   H +  +A+  L+Y     KE+  + K+ I  D+
Sbjct: 473 FGRNGITVSPVDDSMLISYVLEGGSHGHGMDELAELHLAYTPIPFKEVCGTGKNQITFDR 532

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   +   +A E++++ L+LW LL+P+L+  +++ VYE LD+P++ VV+ ME  G++IDQ
Sbjct: 533 VPLDKALAYAAEDADITLRLWTLLKPRLVDSRMVTVYETLDRPLVPVVANMEREGVRIDQ 592

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L ++S ++S  L  +E+ ++ L+G+ FN+ SPKQLG+ILF  LK  +G K KTG + T
Sbjct: 593 QALARLSQDLSVRLAEIEKEVHALAGQSFNIGSPKQLGEILFDTLKLGTGKKGKTGAYST 652

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            +  LE++    + I + +L+WRQL+K+KSTY D+L   I+  T RVHT ++LA+T TGR
Sbjct: 653 DSSVLEELAEQGHTIAQRVLDWRQLAKLKSTYTDALQEKISPVTGRVHTAFALAATNTGR 712

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++T+ G+KIRRAF++ P  KL+S DYSQIELR++A +A I  L   F 
Sbjct: 713 LSSTDPNLQNIPVRTEEGRKIRRAFVASPGHKLLSVDYSQIELRLVAEMADIQALKDAFR 772

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIH   AA++FG+ + +++P +RR AK INF IIYGIS F L  QL I   EA  +I
Sbjct: 773 DGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYGISGFGLGRQLGIAPGEANAFI 832

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           K Y  RF  +  ++E TK F RQ+GYV T+FGRR +   I    ++ R   ER AINAPI
Sbjct: 833 KTYLERFHELKVWMEATKAFARQHGYVATLFGRRCYMPGIQDKNAARRAFAERQAINAPI 892

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAM  +  +L       +MLLQ+HDEL+FEVPE E+  A++I+   ME A 
Sbjct: 893 QGTAADIMKRAMNRMPDALAAAGSNARMLLQVHDELLFEVPEAEVDDAARIVREVMEGAA 952

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L VPL     + +NW+E +
Sbjct: 953 ----HLGVPLVAEAGIGDNWEEAH 972


>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
 gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
          Length = 932

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/985 (36%), Positives = 541/985 (54%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    E      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPETMSNGE-IPTNAVYGVVNMLRSMMRQFASER----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+ +YP+YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDNMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             + A + G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAHQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G ++++      I        K   + + E+ 
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGIKDLYERLDDIAPLGFRGSKTMAKKLTEHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+ +  N   L      L F   +N +      +  
Sbjct: 241 DNAVLSYELATIKLDVELDCTPESLLKQQPNVDELTKLYGQLTFKSWLNELLEGGTGEVE 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E                       +  + +  +S SD+ S+++               
Sbjct: 301 AVE-----------------------SAARKTTSASQSDEQSEMD--------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            SQ  I+  +Y  I+  +    W++KL++    +F   TD++D   +  + ++ +  +  
Sbjct: 323 RSQVTIDRSAYETILTEESFNSWLEKLKSAPVIAFDTETDSLDYMVANLVGLSFAIEEGV 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   +I            +    + +L  LK   E++   K+G N+KYD  VL 
Sbjct: 383 -AAYVPVAHDYIGAP---------EQLDRQWVLEQLKPLLEDDAIAKVGQNLKYDASVLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I ++G   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 433 RYDIELKGIKFDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKAQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V  +L   L  +L   E L  +Y+ ++ P++ V+S++E TG+ ID 
Sbjct: 493 DLEQASPYAAEDADVTFRLHQRLNAELEKNEALNRIYQDIEVPLVPVLSRIERTGVLIDD 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  ++++G++FNLSSPKQL  I F K+  P   KT +G   T
Sbjct: 553 MLLGAQSQEIAARLDELEQKAFEIAGQEFNLSSPKQLQTIFFEKMGLPVIKKTPSGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AFI+P   K+++ DYSQIELRI+AH++    L   F+
Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFIAPHGWKILAVDYSQIELRIMAHLSGDKALLDAFK 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N  DIH   AAEI GV+I++V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 732 NGKDIHAATAAEIIGVDIDQVTSEQRRRAKAINFGLIYGMSAFGLSKQLGIPRGEAQQYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 792 DTYFERYPGVMQYMEDTRSLAAEKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV    ++     I   ME A
Sbjct: 852 QGTAADIIKKAMLLVDEWVQAEGEGKVKLLMQVHDELVFEVESSSLSEIESKIQKLMESA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 912 A----ELDVPLVAEAGHGDNWDQAH 932


>gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638]
 gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638]
          Length = 930

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/984 (36%), Positives = 544/984 (55%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    GLP  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GLPTGAMYGVLNMLRSLILQYQ----PSHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LAREAEKLGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVATKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +   + +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTIAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +  E L ++      L+   K  EF + I  V       A 
Sbjct: 241 EVAYLSYKLATIKTDVELELTCEQLEVQQPIAEELLGLFKQYEFKRWITDVEAGKWMQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P     +T                                         +  E   +
Sbjct: 301 GSKPAAKPKDTI---------------------------------------VVDAEDEVE 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D+Y  ++    +  WV+KL+     +F   TD++D   +  + ++ +T    
Sbjct: 322 EEATTLSYDNYEVVLEESQLIAWVEKLKKAPVFAFDTETDSLDNISANMVGLSFATEPGM 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D     S+         + +L  LK   E+E   K+G N+K+D+ +L 
Sbjct: 382 -AAYVPVAHDYLDAPNQISR---------ERVLELLKPLLEDEKAKKVGQNLKFDRGILQ 431

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 432 NYGIELRGIAYDTMLESYILNSVAGRHDMDSLSDRWLKHKTVTFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDP 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E++  L  LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 552 AVLHKHSEELALRLSELEQKAHEIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K IL++R L+K+KSTY D LP  IN +T RVHT Y  A   TGR
Sbjct: 612 SEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSTEPNLQNIPVRNEEGRRIRQAFIAPKDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+   RR AK INF +IYG+S F L+ QL IPR E+  Y+
Sbjct: 731 EGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDITSSNAARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   LE  K   +M++Q+HDELVFEV  E++   S+ I   ME   
Sbjct: 851 QGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELVFEVHHEDLEAVSKKIHELME--- 907

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              + L VPL V +    NW   +
Sbjct: 908 -GSMTLDVPLLVEVGSGENWDLAH 930


>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
 gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
          Length = 929

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/984 (36%), Positives = 549/984 (55%), Gaps = 71/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G    A+ G  NML  LL         SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYH----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YKA+RP +PE L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHSMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G +V I + DKD+ QLV+P+  L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LAVQAEKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + ++ 
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAELSFRGAKTMAPKLEQHK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L + + +   L       EF + ++ + +       
Sbjct: 241 EVAYLSYQLATIKTDVELELSCEQLTVNELDVDELHRLFSRYEFKRWLSDIESGTWMQGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                V  ++                                          +  + +++
Sbjct: 301 KSSQPVQTVSNA----------------------------------------VVEQAVEE 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ D Y  I++ K +  W+++L+     +F   TD +D   +  I ++ +    +
Sbjct: 321 DNAPTLSADGYVTILDEKTLLDWIERLKQAEVFAFDTETDGLDTLTANLIGLSFAIKPGE 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+ H   D+  +     ++L+  K   E+E  LKIG N+K+DK V+ 
Sbjct: 381 --------AAYLPLA-HDYLDAP-EQLDRAQVLALFKPLLEDEKLLKIGQNLKFDKGVMQ 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I +RG   D ML SYVLDS    HD+ S+A+++L +     +EI    K+ +  ++I
Sbjct: 431 RYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTITFEEIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V L L   L  KL     L  V++ +D P++ V+S++E TG+ ID 
Sbjct: 491 ALEQAGPYAAEDADVTLHLHQTLWGKLQPHADLCQVFQAIDMPLVPVLSRIERTGVLIDP 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S E++  L  LE   Y+L+GE+FNL+S KQL  IL+ K K P   KT  G   T
Sbjct: 551 AILAEHSKELTTRLAGLETQAYELAGEEFNLASTKQLQGILYEKQKLPILKKTPKGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T+RVHT Y  A T TGR
Sbjct: 611 NEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+     +++ADYSQIELRI+AH++    L   F 
Sbjct: 670 LSSSDPNLQNIPVRNDEGRRIRQAFIASKGYSIVAADYSQIELRIMAHLSGDKGLLNAFA 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N LDIHR  A+E+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL IPRSE+  Y+
Sbjct: 730 NGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    ++GYV T+ GRR++  +I+S  +  R   ERAAINAP+
Sbjct: 790 NLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AMIS+   L+      KM++Q+HDELVFE+ +  I  +   I   ME   
Sbjct: 850 QGTAADIIKKAMISIDDWLQKDTPLVKMIMQVHDELVFEIHDSVIEESISKIKILMEGCM 909

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL+V+I    NW + +
Sbjct: 910 ----QLNVPLQVDIGTGMNWDQAH 929


>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
 gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
          Length = 930

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/984 (35%), Positives = 539/984 (54%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVSKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAALSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V       A 
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                                      + 
Sbjct: 301 GGKPAAKPAEPA---------------------------------------AAAQAEAED 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + ++ +     
Sbjct: 322 EPASALSAEHYVTILDEATLVTWIDKLKQAPLFAFDTETDSLDNISANMVGLSFAVEPGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                + +L+ LK   E+E  LK+G N+KYD+ +L 
Sbjct: 382 -AAYVPVAHDYLDAP---------DQIPRERVLALLKPLLEDEKLLKVGQNLKYDRGILA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I +RG   D ML SY+LDS    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 432 NYDIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID 
Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDP 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 552 AVLHAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 612 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFS 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 EGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V + L   +   +M++Q+HDELVFEV ++E+   S+ I   ME + 
Sbjct: 851 QGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST 910

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 911 ----TLAVPLLVEVGSGENWDQAH 930


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/984 (36%), Positives = 529/984 (53%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLMQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVEAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE  G  V I + DKD+ QLV+P   L +T+    +  + V  K+G+PP  ++   
Sbjct: 121 LARRAELAGRHVLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVCDKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G+L+ I  +  R+        K     +L   
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGIGSLKTIYDDLDRVATLSFRGAKTMGAKLLLNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS  L  ++TDV +    + L ++  +   L       EF + +            
Sbjct: 241 EKADLSYLLATIKTDVDLAQDCDDLAIKPLDSETLHRLFSRYEFKRWL------------ 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                           + S L+       +              
Sbjct: 289 ----------------------------TDAQEGSWLTGAKGGRKTRVEKSADAPAAPAS 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                +  + Y  I++   ++  + +L   G  +F   TD++D   +  + I+ +     
Sbjct: 321 EVSVTLTREGYQTILDEAALEALIARLRQAGCFAFDTETDSLDVLSANLVGISCADAPG- 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +  +I L+ H   D+  +    + +L+ L+   E+E   KIG N+KYD  V+ 
Sbjct: 380 -------QACYIPLA-HDYLDAP-RQLDRQYVLARLQPLLEDEGVAKIGQNLKYDIGVMA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI++RG   D ML SYVL+S    HD+ S+A + L +     +EI    K  +  ++I
Sbjct: 431 RYGITLRGVAFDTMLESYVLNSVAGRHDMDSLAARHLDHKTITFEEIAGKGKGQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V LQL   L P L  E    H++  +D P+I V+S+ME TG+ ID 
Sbjct: 491 PLEQAAEYAAEDADVTLQLHQRLWPTLEGESGPSHIFRDIDMPLIPVLSRMERTGVLIDS 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q S E++  L +LE+  +  +GE FNLSS KQL  ILF K + P   KT  G   T
Sbjct: 551 AILGQHSQELAVRLEALEQQAHSEAGEPFNLSSTKQLQAILFEKQQLPVLKKTPGGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++      + + ILE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 611 NEEVLAELADQGYALPQVILEYRTLAKLKSTYTDKLPQMVNPLTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP+++D G++IR+AFI+P   ++++ADYSQIELRI+AH++    L   F 
Sbjct: 671 LSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSRIVAADYSQIELRIMAHLSGDKGLLAAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E VS   RR AK INF +IYG+S F LA QL I R EA  Y+
Sbjct: 731 AGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+      GYVET+ GRR++  EIN+     R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYLPEINARNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L++ +   +M++Q+HDELVFEVPE ++      +   ME   
Sbjct: 851 QGTAADIIKRAMIAVDGWLQEAQPEVRMIMQVHDELVFEVPESQVEAVVCQVRALMEN-- 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              ++L VPLKV+I    NW + +
Sbjct: 909 --SLSLAVPLKVDIGCGENWDQAH 930


>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044]
 gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 930

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/984 (35%), Positives = 540/984 (54%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V       A 
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                                      + 
Sbjct: 301 GGKPAAKPAVPA---------------------------------------AAAEAEEEV 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + ++ +     
Sbjct: 322 EAATALSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGLSFAVEPGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                + +L+ LK   E+E  LK+G N+KYD+ +L 
Sbjct: 382 -AAYVPVAHDYLDAP---------DQIPRERVLTLLKPLLEDEKVLKVGQNLKYDRGILA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I +RG   D ML SY+LDS    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 432 NYDIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID 
Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDP 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 552 AVLHAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 612 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 EGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V + L   K   +M++Q+HDELVFEV ++E+   S+ I   ME + 
Sbjct: 851 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST 910

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 911 ----TLAVPLLVEVGSGENWDQAH 930


>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
 gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
          Length = 930

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/984 (35%), Positives = 539/984 (54%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVSKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAALSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V       A 
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                                      + 
Sbjct: 301 GGKPAAKPAEPA---------------------------------------AAAQAEAED 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + ++ +     
Sbjct: 322 EPASALSAEHYVTILDEATLVTWIDKLKQAPLFAFDTETDSLDNISANMVGLSFAVEPGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                + +L+ LK   E+E  LK+G N+KYD+ +L 
Sbjct: 382 -AAYVPVAHDYLDAP---------DQIPRERVLALLKPLLEDEKLLKVGQNLKYDRGILA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I +RG   D ML SY+LDS    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 432 NYDIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID 
Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDP 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 552 AVLHAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 612 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 EGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V + L   +   +M++Q+HDELVFEV ++E+   S+ I   ME + 
Sbjct: 851 QGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST 910

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 911 ----TLAVPLLVEVGSGENWDQAH 930


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/985 (36%), Positives = 538/985 (54%), Gaps = 74/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL     +   SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLA----QYNPSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDELRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G +V I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LALEAEKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPEEVEQKYGVPPALIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           A+ GDS DNIPG+PG+G KTA  LLQ  G+++ I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADLGFRGAKTMATKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +P E L + + N   L +     EF + ++ +         
Sbjct: 241 DVAFLSYQLATIKTDVELALPCEELTVTEPNVEALQTLFSRYEFKRWLSDLQDGKWLQGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                         T    +LSD+   +                
Sbjct: 301 KSN---------------------------TQAQKALSDEPVAV---------------P 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   +  ++Y  I++      W++KL+     +F + TD +D   +  + I+ +     
Sbjct: 319 ETSSVLPTENYVTILDQDLFDSWLEKLKNSEVFAFDLETDALDTLSANIVGISFAIAPG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D           +      +L+ LK   E++   K+G N+KYD+ VL 
Sbjct: 378 EAAYLPVAHDYLDAP---------EQLDRAAVLAQLKPLLEDDSAWKVGQNLKYDRGVLK 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I + G   D ML SY+L+S    HD+ S+A +WL++     +EI    K+ +  ++I
Sbjct: 429 NYDIELAGIKFDTMLESYILNSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L  E     V+E+++ P++ V+S++E  G+ IDQ
Sbjct: 489 ALEQASHYAAEDADVTLQLHLKMWPELEKEAGPRKVFEQIEMPLLTVISRIERNGVLIDQ 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q S E++  L  LE   ++L+GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 AILAQHSKELTARLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPLSGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AF++    ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSADPNLQNIPVRNDEGRRIRQAFVAAKGYRIVAADYSQIELRIMAHLSQDKGLLDAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FGV ++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 728 QGEDIHRATASEVFGVPLDKVSAEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E T+      GYVETI GRR+   +I S  +  R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLRYMENTRQLAASKGYVETIEGRRLWLPDIKSSNAIRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   LE     + +M++Q+HDELVFEV  E +  ASQ I   ME  
Sbjct: 848 QGTAADIIKRAMIAVDAWLEQQNDNSVRMIMQVHDELVFEVKAEAVEAASQKIRALME-- 905

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL V + V +NW E +
Sbjct: 906 --GSVQLDVPLLVEVGVGDNWDEAH 928


>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 927

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/984 (35%), Positives = 540/984 (54%), Gaps = 73/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V       A 
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                                      + 
Sbjct: 301 GGKPAAKPA------------------------------------------VPAAAAEEV 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + ++ +     
Sbjct: 319 EAATALSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGLSFAVEPGV 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                + +L+ LK   E+E  LK+G N+KYD+ +L 
Sbjct: 379 -AAYVPVAHDYLDAP---------DQIPRERVLALLKPLLEDEKVLKVGQNLKYDRGILA 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I +RG   D ML SY+LDS    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 429 NYDIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID 
Sbjct: 489 ALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDP 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 AVLHAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 609 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 728 EGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V + L   K   +M++Q+HDELVFEV ++E+   S+ I   ME + 
Sbjct: 848 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST 907

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 908 ----TLAVPLLVEVGSGENWDQAH 927


>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
 gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
          Length = 932

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/985 (36%), Positives = 544/985 (55%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N   LVDGSS+++RA++A P  +   DG P  A+ G  NML  LL+    +      AV
Sbjct: 6   DNPFILVDGSSYLFRAYHAAPNFTN-GDGQPTGAVYGVINMLRSLLKQFGTDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRN++YP+YKANRP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  IFDAKGKTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+    +D E V++K+GI PE ++   
Sbjct: 121 LASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L+ +  +   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    E  + ++ N   LI     + F + +  +    D    
Sbjct: 241 EGAYLSYELATIKLDVELDKTPEEFVKQEPNVDELIQMFGQMNFKRWLTEMLDGSDGKIV 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + E     ++T+  +  A E                                      + 
Sbjct: 301 SHETSSNSVSTSSKQDDAEE--------------------------------------EL 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +    ++   Y  I+  +    W+ KL     A+F   TD++D   +  I ++ +  +  
Sbjct: 323 IVAAQVDRSKYETILTKEAFSVWLDKLNNADVAAFDTETDSLDYMVANLIGLSFAVEEG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L  LK + E+++  K+G N+KYD  VL 
Sbjct: 382 EAAYVPVAHDYLDAPEQLDRD---------WVLEQLKPYLEDDNKAKVGQNLKYDASVLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I M+G   D ML SYV +S    H++ S+A ++L +     +EI    K  +  ++I
Sbjct: 433 RYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E++++ L+L  +L  KL   EKL  V+  ++ P++ V+S+ME  G+ ID 
Sbjct: 493 ALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDD 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI + L  LE+  ++++GE+FN++SPKQL  ILF K++ P   KT +G   T
Sbjct: 553 MLLSAQSLEIGQRLDELEKAAFEVAGEEFNMNSPKQLQTILFEKMELPVIKKTPSGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAE+ GV+IE+V+ + RR AK INF +IYG+S F LA Q+ IPR EA DY+
Sbjct: 732 AGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    + GYVET++GRR+H  EIN+     R   ERAAINAP+
Sbjct: 792 NVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI V + +E + K    +L+Q+HDELVFEV E+ +   +  +   ME+A
Sbjct: 852 QGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEVTTKVRELMEQA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL       NNW E +
Sbjct: 912 ----VQLDVPLVAEAGFGNNWDEAH 932


>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
 gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
          Length = 930

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/985 (36%), Positives = 544/985 (55%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    +      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + +   LI     L F   +N +         
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLE------G 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V  D +T   +G +  ++ D DT                                 
Sbjct: 295 GTGVVEADESTGAARGGSAASKADMDT--------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W+ KL+     +F   TD++D   +  + ++ +T D+ 
Sbjct: 322 -SAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETDSLDYMVANLVGLSFAT-DEG 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+E   K+G N+KYD  VL 
Sbjct: 380 IAAYVPVAHDYLDAPQQLDRD---------WVLAQLKPILEDEAQAKVGQNLKYDASVLA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 491 DLDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 551 MKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVINKTPSGTPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 730 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + G+VETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  ++     + + ME A
Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQNLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL       +NW + +
Sbjct: 910 A----ELKVPLVAEAGHGDNWDQAH 930


>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
 gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Vibrio fischeri ES114]
          Length = 932

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/985 (36%), Positives = 543/985 (55%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N   LVDGSS+++RA++A P  +   DG P  A+ G  NML  LL+    +      AV
Sbjct: 6   DNPFILVDGSSYLFRAYHAAPNFTN-GDGQPTGAVYGVINMLRSLLKQFETDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRN++YP+YKANRP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  IFDAKGKTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+    +D E V++K+GI PE ++   
Sbjct: 121 LASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L+ +  +   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    E  + ++ N   LI     + F + +  +    D    
Sbjct: 241 EGAYLSYELATIKLDVELDKTPEEFVKQEPNVDELIQMFGQMNFKRWLTEMLDGSDGKIV 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + E     ++T+  +  A E                                      + 
Sbjct: 301 SHETSSNSVSTSSKQDDAEE--------------------------------------EL 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +    ++   Y  I+  +    W+ KL     A+F   TD++D   +  I ++ +  +  
Sbjct: 323 IVAAQVDRSKYETILTKEAFSVWLDKLNNADVAAFDTETDSLDYMVANLIGLSFAVEEG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L  LK + E+++  K+G N+KYD  VL 
Sbjct: 382 EAAYVPVAHDYLDAPEQLDRD---------WVLEQLKPYLEDDNKAKVGQNLKYDASVLA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I M+G   D ML SYV +S    H++ S+A ++L +     +EI    K  +  ++I
Sbjct: 433 RYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E++++ L+L  +L  KL   EKL  V+  ++ P++ V+S+ME  G+ ID 
Sbjct: 493 ALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDD 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI + L  LE+  ++++GE+FN++SPKQL  ILF K++ P   KT +G   T
Sbjct: 553 MLLSAQSVEIGQRLDELEKAAFEVAGEEFNMNSPKQLQTILFEKMELPVIKKTPSGAAST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFS 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAE+ GV+IE+V+ + RR AK INF +IYG+S F LA Q+ IPR EA DY+
Sbjct: 732 AGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    + GYVET++GRR+H  EIN+     R   ERAAINAP+
Sbjct: 792 NVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI V + +E + K    +L+Q+HDELVFEV E+ +   +  +   ME+A
Sbjct: 852 QGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEVTTKVRELMEQA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       NNW E +
Sbjct: 912 A----QLDVPLVAEAGFGNNWDEAH 932


>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
 gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
          Length = 930

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/983 (36%), Positives = 548/983 (55%), Gaps = 70/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P +A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTSAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S +  E TP+          
Sbjct: 302 TEQ-----------------------PVKMNQYQATSQDQSAV--ENTPK---------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL +    +    TD++D   +  + I+ + L+  +
Sbjct: 327 --IQIDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNSHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I 
Sbjct: 435 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 494 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 554 ALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 614 EEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 673 SSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLISAFSQ 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+ 
Sbjct: 733 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMN 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 793 LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 853 GTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA- 910

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 911 ---ELVVPLIVEVGVGKNWDEAH 930


>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 930

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/984 (35%), Positives = 540/984 (54%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H  V
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L ++      L++  +  EF +    V       A 
Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                                      + 
Sbjct: 301 GGKPAAKPAVPA---------------------------------------AAAEAEEEV 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++ + Y  I++   +  W+ KL+     +F   TD++D   +  + ++ +     
Sbjct: 322 EAATALSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGLSFAVEPGV 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                + +L+ LK   E+E  LK+G N+KYD+ +L 
Sbjct: 382 -AAYVPVAHDYLDAP---------DQIPRERVLALLKPLLEDEKVLKVGQNLKYDRGILA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I +RG   D ML SY+LDS    HD+ S++ +WL +     +EI    K+ +  ++I
Sbjct: 432 NYDIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + PKL   E  L++++ ++ P++ V+S++E  G++ID 
Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDP 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI++ L+ LE+  ++++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 552 AVLHAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 612 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 EGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V + L   K   +M++Q+HDELVFEV ++E+   S+ I   ME + 
Sbjct: 851 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELNAVSKKIHELMENST 910

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V +    NW + +
Sbjct: 911 ----TLAVPLLVEVGSGENWDQAH 930


>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
 gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
          Length = 930

 Score =  979 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/985 (36%), Positives = 544/985 (55%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    +      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + +   LI     L F   +N +         
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLE------G 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V  D +T   +G +  ++ D DT                                 
Sbjct: 295 GTGVVEADESTGAARGGSAASKADMDT--------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W+ KL+     +F   TD++D   +  + ++ +T D+ 
Sbjct: 322 -SAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETDSLDYMVANLVGLSFAT-DEG 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+E   K+G N+KYD  VL 
Sbjct: 380 IAAYVPVAHDYLDAPQQLDRD---------WVLAQLKPILEDEAQAKVGQNLKYDASVLA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +  + KL  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 491 DLDEASPYAAEDADVTLRLHNRLFANIEQDDKLKTVYEEIEMPLVPVLSRIERTGVLIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 551 MKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 730 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + G+VETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  ++     + + ME A
Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQNLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL       +NW + +
Sbjct: 910 A----ELKVPLVAEAGHGDNWDQAH 930


>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
 gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
          Length = 933

 Score =  979 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 535/985 (54%), Gaps = 69/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G++E +  N   I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A +S +L  ++ DV +    E L+    N   LI     L F   +N +         
Sbjct: 241 ANADMSYELATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNELLEG------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                       ++  + SS +   S  +S  T +         
Sbjct: 295 ------------------------GSGVVEADEKSSAAGAGSVRSSASTVEM-------N 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+  +Y  I++      W++KL+     +F   TD++D   +  + ++ +T D+ 
Sbjct: 324 TSAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAT-DEG 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 383 VAAYVPVAHDYLDAPQQLDRD---------WVLEQLKPILEDDAQAKVGQNLKYDMSVLA 433

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 434 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +YE ++ P+I V+S++E TG+ ID 
Sbjct: 494 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDD 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 554 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 614 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++    K+++ DYSQIELRI+AH++    L + F+
Sbjct: 673 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 733 QGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + G+VETI+GRR+H  EI S     R   ERAAINAP+
Sbjct: 793 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 853 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESALAEIESKVQELMESA 912

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 913 A----ELEVPLVAEAGHGDNWDQAH 933


>gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
 gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
          Length = 949

 Score =  979 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/993 (40%), Positives = 592/993 (59%), Gaps = 70/993 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +GFEADDIIA
Sbjct: 68  VIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEQEGFEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  VTIIS+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +
Sbjct: 128 TLACQARDAGGRVTIISSDKDLMQLVGGGVEMLDAMKNKRIDSDGVFEKFGVGPDRVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++E  E   L
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAEEIKQPKRRQTLIEKREQIEL 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L +++ +   L+ L + D +   L+SFL  +EF  L  RVA     +A    PV
Sbjct: 248 SKKLVQLDSNMELGFSLDDLGVRDPDADTLLSFLAEMEFRTLSKRVAEQLGKEA----PV 303

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + D       G A   +                                      ++  P
Sbjct: 304 IADAPAAAPSGGAAPADALS-----------------------------------VADLP 328

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +  +Y  + + + +Q W+ ++   G  +    T  +D   +  + I+++          
Sbjct: 329 FDASAYECVRDAEALQVWINQIRERGWVAVDTETTGLDEMKADLVGISLAVEPGA----- 383

Query: 423 KVETIFIDLSVHT---SQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDK 473
                +I L+      S D  G +TL +        LS LK   E+   LKIG N+KYD 
Sbjct: 384 ---ACYIPLAHKAEAGSDDLFGSDTLAEGQMDFATALSMLKPVLEDPAILKIGQNMKYDA 440

Query: 474 LVLHRY-------GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523
            +  R        GI++  ++D ML+SY L +G+  H + ++++++LS++    K +L +
Sbjct: 441 KIFRRQHGAGFEDGITVAPYDDTMLLSYALFAGQHGHGMDTLSERYLSHSPIPIKSLLGT 500

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            KS+I  D++  +    +A E++++ L+LW L +P+L  +++  VYE L++P+  V+++M
Sbjct: 501 GKSAITFDRVPIADAVAYAAEDADITLRLWKLFKPQLHQQRVTTVYETLERPLSPVLAKM 560

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E+ G+++D+D L ++S   ++ + +LE  I++L+GE FN+ SPKQLG+ILF K+    G 
Sbjct: 561 EMEGVKVDRDTLSRMSNAFAQKMAALESEIHELAGETFNVGSPKQLGEILFDKMGLEGGK 620

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           K KTG +  T  D+ +    ++ +   +L+WRQLSK+KSTY D+L +HI+  T RVHT Y
Sbjct: 621 KGKTGAY-ATGADILEDLATEHDLPARVLDWRQLSKLKSTYTDALQDHIHPETGRVHTSY 679

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
                 TGRLAS +PNLQNIPI+++ G++IR AF++     L++ DYSQIELRILAH+A 
Sbjct: 680 VQTGANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDYSQIELRILAHVAG 739

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
           I  L Q F    DIH + A+E+F V + +++P +RR AK INF +IYGIS F LA  LRI
Sbjct: 740 IDTLKQAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAINFGVIYGISGFGLARNLRI 799

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           PR+EA  +I RYF RFPGI  Y++ T  F +++GYV+T+FGR+IH  EI + K       
Sbjct: 800 PRAEAQGFIDRYFERFPGIRRYMDDTVAFAKEHGYVQTLFGRKIHTPEI-AAKGPRAGFA 858

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           +RAAINAPIQG+AAD+ RRAMI + +++    L  +MLLQ+HDEL+FEVPE       + 
Sbjct: 859 KRAAINAPIQGTAADVIRRAMIRMPEAI--AHLPARMLLQVHDELLFEVPESAAEDTIEA 916

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
               ME A  P ++L V L  +     NW E +
Sbjct: 917 ARKVMESAADPAVHLDVKLVADAGQGKNWAEAH 949


>gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
 gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
          Length = 931

 Score =  979 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/979 (40%), Positives = 591/979 (60%), Gaps = 59/979 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLQRYVEGNHGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +G+EADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDLYKANREAMPEDLRPQIPLTRDATKAFNIACKEKEGYEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G   TIIS+DKDLMQLV     + D +K + ID E V +K+G+ PE++V +
Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGDGVEMLDAMKNKTIDREGVFEKFGVYPERVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L  A  IKQ KRR+ +++ A+  RL
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLDRAEEIKQPKRRQTLIDNADQIRL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SRKLV L  D P+   LE L + D +   L+ FL  +                       
Sbjct: 247 SRKLVQLDEDTPLDFTLEDLEVRDPDPDTLLGFLAEM----------------------- 283

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP--QKLFLERLQKLSQ 360
                                      +F +LS + + +   + P  +   +    + + 
Sbjct: 284 ---------------------------EFRTLSKRIADVLGREAPVIEAPAVPDAPEAAD 316

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P    +Y  + +   +Q W+ ++   G  +    T  +D   ++ + I++     K   
Sbjct: 317 IPFEAGNYEHVSDAAALQVWIDQIYEFGYVAVDTETTGLDEMVAELVGISLCVQPGKACY 376

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              +        +  S+D       T+E L  L    E+   +KIG N+KYD  +  + G
Sbjct: 377 IPLIHKTHTGDDLFGSEDLAEGQIPTEEALRMLTPMLEDPSIMKIGQNMKYDSKIFAQLG 436

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
           I++   +D ML+SYV+ +G   H + ++++++L +T    K +L S KS++  DK+  +Q
Sbjct: 437 ITVAPIDDTMLLSYVMHAGLHGHGMDALSERYLGHTPIPIKPLLGSGKSAVTFDKVPLAQ 496

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E++++ L+LW L +P+L   ++  VYE L++P++ V++ ME +GI++D+D L +
Sbjct: 497 AVPYAAEDADITLRLWQLFKPQLHRIQVTKVYETLERPLVPVLAAMERSGIKVDRDTLSR 556

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S   ++ +  LE+ IY+L+G KFN+ SPKQLG+ILF ++    G K KTG + T A  L
Sbjct: 557 MSNAFAQKMAGLEDEIYELAGRKFNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVL 616

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +   ++ +   IL+WRQLSK+KSTY D+L +HINK T RVHT YS+A   TGRLAS +
Sbjct: 617 EDL-ATEHDLPGRILDWRQLSKLKSTYTDALQDHINKDTGRVHTSYSIAGASTGRLASTD 675

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G++IR AF++   K L++ DYSQIELRILAHIA I  L Q F++ +DI
Sbjct: 676 PNLQNIPIRSEEGRRIREAFVAEEGKVLVALDYSQIELRILAHIADIPELKQAFKDGIDI 735

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H + A+E+FGV +++++P +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF 
Sbjct: 736 HALTASEMFGVPLDEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFE 795

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RFPGI  Y++ TK F +++G+V+T+FGR+I+  EI + K       +RAAINAPIQG+AA
Sbjct: 796 RFPGIRTYMDNTKAFAKEHGFVQTLFGRKINTPEIGA-KGPRAGFAQRAAINAPIQGTAA 854

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ RRAMI +  +++D  +   MLLQ+HDEL+FEV +       +     ME A  P + 
Sbjct: 855 DVIRRAMIRMPAAIKD--IPATMLLQVHDELLFEVEKGAEDALIKAARDVMENASEPVVK 912

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L V L V+     NW E +
Sbjct: 913 LDVKLIVDAGKGANWAEAH 931


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score =  979 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/985 (35%), Positives = 534/985 (54%), Gaps = 79/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRA++A P  +   DG P  AI G  NML  +L+    E    H AV
Sbjct: 6   ENPLILIDGSSYLYRAYHAAPNFTN-SDGEPTGAIYGVVNMLRSMLRQFSTE----HIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRSQIEPLHAVIKAMGLPLIAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  A ++G  V I + DKD+ QLV     L +T+ +  +D   V+ K+GI PE ++   
Sbjct: 121 LSTQASQQGMPVLISTGDKDMAQLVDQNVTLINTMTDVVMDPAGVVDKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDALYDNLDDIAALGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +S KL  ++ DV + +  + L     +   L      L+F + +  +    D    
Sbjct: 241 EAAYMSYKLATIKLDVELDVTPDELRKGVPDTDALTELFGKLQFRRWLTEMLDGSD---- 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G  +  E   D   +    +                         
Sbjct: 297 ---------------GRIVADEKSGDVPTEKKAVAP------------------------ 317

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  +++ +    W+++L+   + +F   TD +D   +  + ++ +  + K
Sbjct: 318 ----TIDRSGYETVLDKESFATWLEQLKAAKAFAFDTETDGLDYMTANVVGVSFAIEEGK 373

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E+    KIG N+K+D  ++ 
Sbjct: 374 -AAYVPVAHDYLDAPAQLDRD---------WVLEQLKPLLEDPKQAKIGQNLKFDASIVA 423

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L +     +E+    K  +  ++I
Sbjct: 424 RYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI 483

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ L+L   L PK+  + KL HV+E ++ P++ V+S+ME TG+ +D 
Sbjct: 484 DLEQAGPYAAEDADITLRLHNTLYPKVEADDKLNHVFETIEMPLVPVLSRMERTGVYVDS 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  +E+  ++++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 544 MLLGAQSTEIAARLDEIEKKAFEIAEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K +LE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 604 NEEVLQELAL-DYPLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++    K+++ DYSQIELRI+AH++    L   F 
Sbjct: 663 LSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFR 722

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI  ++IE+VS + RR AK INF +IYG+S F LA QL + R+EA +Y+
Sbjct: 723 HGKDIHAATAAEILSLDIEEVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYM 782

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+N   + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 783 NVYFERYPGVLEYMESTRNAASEQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI + AMI+V   ++       ++L+Q+HDELVFEV E  +   +  +   ME+A
Sbjct: 843 QGTAADIIKLAMIAVDGWVQQQPEGNVRLLMQVHDELVFEVKESALEAVTASVKALMEQA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL  +    +NW + +
Sbjct: 903 A----TLDVPLIADTGYGDNWDQAH 923


>gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
          Length = 914

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/986 (36%), Positives = 534/986 (54%), Gaps = 85/986 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    R++   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTT-STGKPTGAVKGVLNMLLSL----RRQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+ ++ +YK++RP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 57  VVFDAKGPTFRDALFENYKSHRPPMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T        G  V I + DKD+ QLV P   L +T+     DIE V  K+G+ PE ++  
Sbjct: 117 TLARQCAALGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDIEGVKAKFGVGPELIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL    G L+ +  +  ++        K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTACGLLNGIPGGLKGLYEHLDQVAGLPIRGAKSLGAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + + A +S +L  ++ DV + + +  L+  + +   LI+  + LEF + ++ +       
Sbjct: 237 HRDAAFMSYELATIKIDVALDVEVGDLMPGEPHREALIALYRELEFKQWLDELLREAKAA 296

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N E         + +G +I+ E                                    
Sbjct: 297 GENCE--------VQPEGCSIQAEA----------------------------------- 313

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  ++   D ++W+ +L+     +F   T ++DA  ++ + ++ +   
Sbjct: 314 -----------QYETLLEQADFERWLARLKAAECFAFDTETTSLDAQRAELVGVSFAVEP 362

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +      +   ++ +      D+         +L  LK   E+    KI  + KYD  V
Sbjct: 363 GQ-AAYVPLRHSYMGVPQQLELDA---------VLGALKPLLEDPAKTKICQHGKYDMNV 412

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPID 531
           L  YGI MRG   D ML SYVLD+  + HD+ S+A K+L       ++I       +  D
Sbjct: 413 LMHYGIEMRGMAFDTMLESYVLDATATRHDMDSLALKYLGRGTIRFEDIAGKGAKQLTFD 472

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I+  Q   +A E+++V L+L   L  KL     LL V   ++ P++ V++++E  G  +
Sbjct: 473 QIAIEQAGPYAAEDADVTLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALV 532

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  LL Q S E+   L+ LE   +D++GE+FNL SPKQL  IL+ KL  P  +KT  GQ 
Sbjct: 533 DAQLLGQQSVELGDKLVQLEREAFDIAGEEFNLGSPKQLCAILYDKLGCPVISKTAGGQP 592

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    L ++   D P+ K I++ R LSK+K TY D LP  IN RT R+HT Y  A T T
Sbjct: 593 STAESVLAELAEQDYPLPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTAT 652

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T  G++IR+AF++ P  KL++ADYSQIELRI+AH+A+   L   
Sbjct: 653 GRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHA 712

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N LD+HR  AAE+FGV +E+VS   RR AK INF +IYG+S F LA Q+ + R EA +
Sbjct: 713 FQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDVGRKEAQE 772

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+  Y+E+T+    + GYVET+FGRR++  EINS   ++R   ER AINA
Sbjct: 773 YIDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTAINA 832

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI +RAMI+V   L+D  L  +++LQ+HDELV EV E+ +    + I   M  
Sbjct: 833 PMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELVLEVREDLVEQVREAICPLMSG 892

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A      L VPL V   V N+W E +
Sbjct: 893 AA----QLDVPLLVEAGVGNSWDEAH 914


>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 933

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/978 (40%), Positives = 589/978 (60%), Gaps = 56/978 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML K ++ +      +H A
Sbjct: 8   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQKYVEGNAGPDAPTHVA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E++G+EADDIIA
Sbjct: 68  VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQMPLTREATKAFNIACKELEGYEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VTI+S+DKDLMQLV     + D +K ++ID + V +K+G+ PE++V +
Sbjct: 128 TLAVQAREAGGQVTIVSSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVGPERVVDV 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRR+ ++E  +   L
Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLESLLDRAEEIKQPKRRQTLIEKRDQIEL 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L  + P+   L+ L ++D     L+ FL  +EF  L  R+A     +A  I   
Sbjct: 248 SKKLVQLDENTPLDFTLDDLEVKDPEPDTLLGFLAEMEFRTLTKRIADKLGAEAPVIADA 307

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
              ++  E + I                                               P
Sbjct: 308 PAPVDEPEAETI-----------------------------------------------P 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   Y  + +   +Q+W+ +    G  +    T  ++   +  + I++      +    
Sbjct: 321 FDAAKYECVRDAGALQKWIDQAYERGWVAVDTETTGLNEMIADLVGISLCIEPG-EACYI 379

Query: 423 KVETIFIDLSVHTSQDSTGK-NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
            +             D+  +      E L+ LK  FE+   LKIG N+KYD  +  RYG+
Sbjct: 380 PLTHRESATDDLFGSDALAEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARYGV 439

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           ++   +D MLMSY +  G+  H + ++++++LS+T    K +L S KS+I  DK+   + 
Sbjct: 440 NVVPIDDTMLMSYAMHGGKHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKVPIDEA 499

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A E++++ L+LW L +P+L   ++  VYE L++P++ V+++ME+ GI++D+D+L ++
Sbjct: 500 TAYAAEDADITLRLWKLFKPQLHQVQVTTVYETLERPLVPVLAEMEMNGIKVDRDVLSRM 559

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S   ++ +  LE  I++L+GE FN+ SP QLG+ILF K+    G K KTG++  T  D+ 
Sbjct: 560 SNAFAQKMAGLEAEIHELAGENFNVGSPAQLGEILFDKMGLEGGKKGKTGKYS-TGADIL 618

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +    ++ + + +L+WRQLSK+KSTY D+L  HIN  T RVHT YS+    TGRLAS +P
Sbjct: 619 EDLATEHELPRRVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGANTGRLASTDP 678

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T+ G++IR AFI+ P   L+S DYSQIELRILAHIA I  L Q F + LDIH
Sbjct: 679 NLQNIPVRTEEGRRIRGAFIAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIH 738

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF R
Sbjct: 739 AMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFER 798

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPGI  Y++ T  F +++GYV+T+FGR+IH  EIN+ K      + RAAINAPIQG+AAD
Sbjct: 799 FPGIRRYMDDTVAFAKEHGYVQTLFGRKIHTPEINA-KGPHAGFSRRAAINAPIQGTAAD 857

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + RRAM+ +  ++  + L  KMLLQ+HDEL+FEV E  +     I    ME A  P + L
Sbjct: 858 VIRRAMVRMPGAI--NGLPAKMLLQVHDELLFEVAEGAVDETIGIARDVMEGAADPAVKL 915

Query: 959 RVPLKVNIKVSNNWQEEN 976
            + L  +     NW E +
Sbjct: 916 DIKLVADAGQGANWAEAH 933


>gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
          Length = 929

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 541/985 (54%), Gaps = 73/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFDAYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V++K+GIPP  M+   
Sbjct: 121 LALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G ++ I  N  ++        K     + +  
Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKEIYDNLDKVATLTFRGAKTMAARLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + +  + L +E+     L++  K  EF + I  +         
Sbjct: 241 EMALLSYKLATIKTDVELELTSDQLTVEEPAVEELLALFKHYEFKRWITDLEDGKWLQGN 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P    +   +N+    E                                        
Sbjct: 301 KGSPSTKKVAAVQNEPAVAE---------------------------------------- 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   +++D Y  I++      W++KL+     +F + TD++D   +  I ++ +T    
Sbjct: 321 -ATSVLSSDGYVTILDEDTFTSWLKKLQDSELFAFDLETDSLDTLSANIIGLSFATAPG- 378

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D           +     ++L+ LK   E+    K+G N+K+D+ VL 
Sbjct: 379 EAAYLPVAHDYLDAP---------EQLDRSDVLARLKPLLEDPQAQKVGQNLKFDRGVLK 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I ++G   D ML SY L+S    HD+ ++A +WL++     +EI    K+ +  ++I
Sbjct: 430 RYDIELQGIRFDTMLESYALNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL + + P+L  E+   +V+E ++ P++ V+S++E  G+ I  
Sbjct: 490 ALEQAAHYAAEDADVTLQLHVKMWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E+   L  LE   ++L+GE FNLSSPKQL  ILF K       KT  G   T
Sbjct: 550 GILATHSQELGSRLAELELKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R L+K+KSTY D LP  IN  + RVHT Y    T TGR
Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGLLSAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIHR  AAE+FGV+++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 729 SEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T+    Q GYV T+ GRR++  +I +  +  R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V + LE       KM++Q+HDELVFEV  + +  A   I   ME  
Sbjct: 849 QGTAADIIKRAMIAVDRWLEQQPSPEVKMIMQVHDELVFEVHADAVEAACAQIRALME-- 906

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL+V+I V +NW + +
Sbjct: 907 --GSMKLDVPLRVDIGVGDNWDQAH 929


>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
 gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
          Length = 930

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/985 (36%), Positives = 543/985 (55%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    +      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + +   LI     L F   +N +         
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLE------G 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V  D +T   +G +  ++ D DT                                 
Sbjct: 295 GTGVVEADESTGAARGGSASSKADMDT--------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W+ KL+     +F   TD++D   +  + ++ +T D+ 
Sbjct: 322 -SAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETDSLDYMVANLVGLSFAT-DEG 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+E   K+G N+KYD  VL 
Sbjct: 380 IAAYVPVAHDYLDAPQQLDRD---------WVLAQLKPILEDEAQAKVGQNLKYDASVLA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 491 ELDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 551 MKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++    K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 730 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + G+VETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  ++     + + ME A
Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQNLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL       +NW + +
Sbjct: 910 A----ELKVPLVAEAGHGDNWDQAH 930


>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
 gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
          Length = 933

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/985 (36%), Positives = 533/985 (54%), Gaps = 69/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      D +P NA+ G  NML  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G++E +  N   I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A +S +L  ++ DV +    E L+    N   LI     L F   +N +         
Sbjct: 241 ANADMSYELATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNELLEG------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                       ++  + SS +   S  +S  T +         
Sbjct: 295 ------------------------GSGVVEADEKSSAAGAGSVRSSASTVEM-------N 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+  +Y  I++      W++KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 324 TSAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDTETDSLDYMVANLVGLSFATEEGV 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 384 -AAYVPVAHDYLDAPQQLDRD---------WVLEQLKPILEDDAQAKVGQNLKYDMSVLA 433

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K  +  ++I
Sbjct: 434 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +   +A E+++V L+L   L   +   EKL  +Y  ++ P+I V+S++E TG+ ID 
Sbjct: 494 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYGEIEVPLIPVMSRIERTGVFIDD 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 554 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K I+E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 614 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++    K+++ DYSQIELRI+AH++    L + F+
Sbjct: 673 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV+IE V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 733 QGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + G+VETI+GRR+H  EI S     R   ERAAINAP+
Sbjct: 793 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  +      +   ME A
Sbjct: 853 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESALAEIESKVQELMESA 912

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 913 A----ELEVPLVAEAGHGDNWDQAH 933


>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
 gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
          Length = 937

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/985 (36%), Positives = 528/985 (53%), Gaps = 80/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRA++A P  +   DG P  A+ G  NML  LL+    E    H AV
Sbjct: 21  ENPLILIDGSSYLYRAYHAAPNFTN-SDGEPTGAVYGVVNMLRSLLRQFSTE----HIAV 75

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR++IYP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 76  IFDAKGKTFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGT 135

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+ +  +    V++K+GI PE ++   
Sbjct: 136 LATQASKAGMPVLISTGDKDMAQLVDENVTLINTMTDVVMGPAGVVEKFGIGPELIIDYL 195

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ I  N   I        K   + + +  
Sbjct: 196 ALMGDKVDNIPGVPGVGEKTAKALLTGVGGLDAIYDNLDAIPALGFRGSKTMPKKLADNK 255

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +S +L  ++ DV +      L+  + +   L S    L+F + ++ +    D    
Sbjct: 256 EAAYMSYELATIKLDVELDSAPHELLKTEPDTDELTSLFGKLQFRRWLSEMLDGSDGKIV 315

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E     +                                                 +K
Sbjct: 316 ADEKASEPVE------------------------------------------------KK 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +    I+   Y  I++    + W+  L      +F   TD++D   +  + ++ +  + K
Sbjct: 328 VVAPTIDRSGYETILDEVSFKTWLDTLTAADVVAFDTETDSLDYMTANLVGVSFAVEEGK 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+    K+G N+K+D  +L 
Sbjct: 388 -AAYVPVAHDYLDAPEQLDRD---------WVLAQLKPLLEDPAQNKVGQNLKFDMSILA 437

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I+M+G   D ML SYV +S    HD+ S+A ++L +     +E+    K  +  ++I
Sbjct: 438 RYDINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI 497

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L  LL  K+   E+L  V+E ++ P++ V+S++E TG+ ID 
Sbjct: 498 DLDVAGPYAAEDADITLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDS 557

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE   Y+++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 558 MLLSAQSTEIAARLDELETKAYEIAEQEFNLSSPKQLQAILFEKMGLPILKKTPSGAPST 617

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K +LE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 618 NEEVLQELAL-DYPLPKILLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGR 676

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++   G++IR+AFI+P   K+++ DYSQIELRI+AH++    L + F+
Sbjct: 677 LSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFK 736

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G+ IE V+ + RR AK INF +IYG+S F LA QL + R+EA DY+
Sbjct: 737 QGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQDYM 796

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+    + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 797 NVYFERYPGVLEYMESTRIHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAINAPM 856

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAM+ V + +E  +    ++L+Q+HDELVFEV E E+   S  +   ME A
Sbjct: 857 QGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQESELDAVSADVRRLMELA 916

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL  +    +NW E +
Sbjct: 917 A----ELDVPLIADTGSGDNWDEAH 937


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/985 (36%), Positives = 542/985 (55%), Gaps = 74/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL     +   SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLA----QYNPSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G +V I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LALEAEKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPEEVEQKYGVPPALIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           A+ GDS DNIPG+PG+G KTA  LLQ  G+++ I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADLGFRGAKTMATKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +P E L + + +   L +     EF + ++ +       + 
Sbjct: 241 DVAFLSYQLATIKTDVELALPCEELNVTEPDVEALQTLFSRYEFKRWLSDLQDGKWLQSK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                         T    +LSD+ + +                
Sbjct: 301 KNN---------------------------TQAQKALSDEPAVV---------------V 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   + ++ Y  I++ +    W++KL+     +F + TD +D   +  + I+ +     
Sbjct: 319 ETSSVLPSEGYVTILDQEHFDSWLEKLKNSEVFAFDLETDALDTLSANIVGISFAVAPG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D                  +L+ LK   E+E+  K+G N+KYD+ VL 
Sbjct: 378 EAAYLPVAHDYLDAP---------DQLDRAAVLAQLKPLLEDENAWKVGQNLKYDRGVLK 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I + G   D ML SY+L+S    HD+ S+A +WL++     +EI    K+ +  ++I
Sbjct: 429 NYDIELAGIKFDAMLESYILNSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L  E     V+E+++ P++ V+S++E  G+ IDQ
Sbjct: 489 ALEQAAHYAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLTVISRIERNGVLIDQ 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q S E++  L  LE   ++L+GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 SILAQHSKELTARLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AF++    ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSADPNLQNIPVRNDEGRRIRQAFVAAKGHRIVAADYSQIELRIMAHLSQDKGLLDAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FGV ++KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 728 QGEDIHRATASEVFGVALDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E T+     NGYVET+ GRR+   +I S  +  R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLRYMENTRQLAASNGYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V + LE       +M++Q+HDELVFEV  E +  ASQ I   ME  
Sbjct: 848 QGTAADIIKRAMIAVDEWLEQQNDNAVRMIMQVHDELVFEVKAEAVEEASQKIRALME-- 905

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL V + V NNW E +
Sbjct: 906 --GSVQLDVPLLVEVGVGNNWDEAH 928


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score =  978 bits (2529), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/977 (41%), Positives = 588/977 (60%), Gaps = 60/977 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           + +H++L+DGS +I+RA++A P L+R  DG P  A+ GFCNMLWKLL++ + +   SH A
Sbjct: 9   ETSHVYLIDGSGYIFRAYHALPPLTRT-DGTPTGAVQGFCNMLWKLLEDLKGDDQPSHLA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD+   TFRN++Y  YKANRP  PE L+PQ  ++R AT+AFG P +E++ +EADDIIA
Sbjct: 68  VIFDHSGKTFRNDLYDLYKANRPPAPEDLIPQFSIIRDATRAFGTPCVELENYEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY   AE  G  VTI+S+DKDLMQLV+    ++D +K ++I +  V++K+G+ P+K++ +
Sbjct: 128 TYARQAEALGADVTIVSSDKDLMQLVTDKVSMFDAMKNKRIQVPEVMEKFGVGPDKVIDI 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GDS+DN+PG+PGIG KTAALL+ EYG+L+ +L  A  IKQK RRE +L +AE AR+
Sbjct: 188 QSLAGDSVDNVPGVPGIGVKTAALLINEYGDLDTLLERAGEIKQKGRREKLLAHAEDARI 247

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV L+ D P+   LE   L + +   L+ FL+                         
Sbjct: 248 SRDLVTLKLDAPMPERLEEFGLAEPDPDVLVPFLR------------------------- 282

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                           E++  +  +  + +    +  +      P               
Sbjct: 283 ----------------EMEFRSFTRKVEEALGGPRADETGDATAP--------------- 311

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           IN D Y  +   + +++W+ K    G  +    TD + +  S  + I+++T   +     
Sbjct: 312 INRDDYECVTTMEALERWIAKSFEAGQIAVDTETDALSSTASGLVGISLATAPGRACYIP 371

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                           +  +     + L  LK   E+   LKIG N KYD  VL RYGI 
Sbjct: 372 LAHVDPQGTGDMFDTGAAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRYGID 431

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539
           +  ++D ML+SYV+++G   H + ++A+  L +     KEI  + K+ I  DK+   +  
Sbjct: 432 VAPYDDTMLISYVMEAGLHGHGMDALAELHLGHTCIPFKEICGTGKNQITFDKVPLDKAT 491

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+LW +L+P L+ +K+  VYE L++PM DV+S+ME  GI++D D L ++S
Sbjct: 492 LYAAEDADITLRLWEILKPALVAKKMATVYETLERPMADVLSKMERVGIKVDPDQLNRLS 551

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           ++  + +++ E   ++ +G  FN++SPKQ+G+ILF ++  P G KTKTG W T A  L+Q
Sbjct: 552 SDFGQKMMAAEAEAHEAAGRDFNVASPKQIGEILFGEMGLPGGKKTKTGAWSTDAAVLDQ 611

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + +   +LE+RQ +K+KSTY+DSL  HIN+ T+RVHT +SLA+T TGRL+S EPN
Sbjct: 612 LAAEGHALPVALLEYRQFAKLKSTYSDSLFAHINRDTKRVHTSFSLAATTTGRLSSTEPN 671

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IR  FI+ P   L++ADYSQ+ELR+LAHIA +  L Q F +  DIH 
Sbjct: 672 LQNIPIRTEAGRQIREVFIAEPGHVLVAADYSQVELRLLAHIANVESLKQAFRDGTDIHA 731

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+FGV IE + P +RR AK INF +IYGIS F LA Q+ + R EA  +I  YF +F
Sbjct: 732 MTASEVFGVPIEGMDPMVRRKAKAINFGVIYGISAFGLANQIGVKRDEAKAFIDAYFEKF 791

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y+++ K    + GYVETIFGRR H+  I     ++R   ER AINAPIQGSAAD+
Sbjct: 792 PGIRAYMDEMKAKAAETGYVETIFGRRAHFPGIRDKNPNMRMFAERQAINAPIQGSAADV 851

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI +  +L    L  KMLLQ+HDELVFEVPE +      +    M +AC P + L 
Sbjct: 852 IRRAMIRMDDALNAANLDAKMLLQVHDELVFEVPENQAADLIALTAKVMGEACSPALELS 911

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+ K    W E +
Sbjct: 912 VPLVVDAKAGRTWGEAH 928


>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
 gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
          Length = 930

 Score =  978 bits (2529), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/983 (36%), Positives = 546/983 (55%), Gaps = 70/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P NA+ G  NML +L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPSLTNAA-GEPTNAMYGVLNMLKRLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRNE++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRNEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S +  E TP+          
Sbjct: 302 TEQ-----------------------PVKMNQYQATSQDQSAV--ENTPK---------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 327 --IQIDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN    KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPDIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + I    K+ +  ++I 
Sbjct: 435 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESIAGKGKNQLTFNQIP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID +
Sbjct: 494 LEQATEYAAEDADVTMKLQQALWLKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDSN 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LEE  Y+L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 554 ALFMQSNEIATRLTALEEQAYELAGQPFNLASTKQLQEILFDKLGLPILQKTPKGAPSTN 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 614 EEVLEELAYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 673 SSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+ 
Sbjct: 733 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLDISRPDAKKYMD 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 793 LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 853 GTAADIIKRAMIKLDEVIY-HDPDIEMIMQVHDELVFEVRSEKVEFFREQIKQQMEDAS- 910

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 911 ---ELVVPLIVEVGVGQNWDEAH 930


>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
 gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
           exonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 939

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/982 (36%), Positives = 540/982 (54%), Gaps = 54/982 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L LVDGSS++YRA++A P L R  +GLP  AI G  NML KL    R +  A + A
Sbjct: 4   SPKTLLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAEYSA 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++YP YK +RP +PE L  Q+  +  A +A G P + + G EADD+I 
Sbjct: 59  CVFDAKGKTFRDDLYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVDGVEADDVIG 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  A ++G    + + DKDL QLV+    L +T+  E +D   V+ K+G+PPE+++  
Sbjct: 119 TLSRQAMEQGVRTVVSTGDKDLAQLVNEHVTLVNTMSGEVLDPPGVLAKFGVPPERIIDY 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+P +G KTA   L E+G+L+ ++  AS IK     EN+    E   +
Sbjct: 179 LSLIGDAVDNVPGVPKVGPKTAVKWLAEHGSLDGVMAAASGIKG-VVGENLRNTLEWLPM 237

Query: 243 SRKLVMLRTDVPITIPLEHLIL---EDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           +R+LV ++TD  ++  +           +  +L++F +   F   +         DA   
Sbjct: 238 ARRLVTVKTDCDLSKSVADFHALRETGEDKEQLVAFFQRYGFKTWLREATGESLPDARAQ 297

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                  +     G                    L D  +    +  P        +   
Sbjct: 298 ARARAATSAPAQGG--------------------LFDAPAPSAGDGAPPADDAAPTEIR- 336

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  +     ++ W++++E+    +    T ++D   ++ + I++S     + 
Sbjct: 337 --------YETVTTPGMLEDWLRRIESAPLVAIDTETTSLDPMQAQLVGISLSAAPG-EA 387

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V     D++              + +L  ++ + E+    K+G N+KYD  V   +
Sbjct: 388 CYIPVAHRGPDVAGLPEHG----QLSREFVLERMRAWLEDASRPKLGQNLKYDIHVFANH 443

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISD 535
           GI +RG   D ML SYVL S R+ H + S+A++ LS    T +E+     S I  D+I  
Sbjct: 444 GIKLRGVAHDTMLQSYVLASHRN-HGMDSLAERLLSLKTITYEEVCGKGASQIGFDQIDL 502

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           ++  E+A E+++V L+L   + P++     L  VYE ++ P+  V+ ++E  G+ ID + 
Sbjct: 503 ARATEYAAEDADVTLRLHRRMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAER 562

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   SAE+ + +L+LE++ Y+ +G+ FNL SPKQ+G+ILF ++K P   KT +G   T  
Sbjct: 563 LAAQSAELGQRMLALEQSAYEAAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDE 622

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+++   D P+ K +L++R LSK+KSTY D LP  +N RT RVHT Y  A+ +TGRLA
Sbjct: 623 EVLQKL-AEDYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPRTGRVHTSYGQATAVTGRLA 681

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP++TD G++IR AFI+ P   ++SADYSQIELRI+AHI+    L + F N 
Sbjct: 682 STEPNLQNIPVRTDEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAFANG 741

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AAEIFGV  + VS + RR+AK INF +IYG+S F LA+ L I R  A  YI R
Sbjct: 742 EDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIERDAARHYIDR 801

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y+E+T+   R+ GYVET+FGRR+   +IN      R   ERAAINAP+QG
Sbjct: 802 YFMRYPGVAHYMEETRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAPMQG 861

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + +MI+V   LE   L T+ ++Q+HDELV EVPE E+      +   M      
Sbjct: 862 TAADLIKLSMIAVQDWLERDGLQTRQIMQVHDELVLEVPEHELELVKARLPELMCTVA-- 919

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              LRVPL   +    NW+E +
Sbjct: 920 --ELRVPLVAEVGSGANWEEAH 939


>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 930

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/983 (36%), Positives = 545/983 (55%), Gaps = 70/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S +              +  
Sbjct: 302 TEQ-----------------------PVKMNQYQATSQDQSAV--------------ENA 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            +  I+   Y  ++   D+ +W++KL +    +    TD++D   +  + I+ + L+  +
Sbjct: 325 PKIQIDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I 
Sbjct: 435 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 494 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 554 ALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 614 EEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 673 SSSDPNLQNIPIRNEEGRRIRQAFIARKGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+ 
Sbjct: 733 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMN 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 793 LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 853 GTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA- 910

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 911 ---ELVVPLIVEVGVGQNWDEAH 930


>gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
          Length = 964

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/981 (41%), Positives = 584/981 (59%), Gaps = 47/981 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L+++D S++I+RA++A P L+RK DGLPV A+ G+CNMLWKLL++ + E   +H   +F
Sbjct: 21  RLWMIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGEDGPTHLVAVF 80

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   TFRN++Y  YKA+RP  PE L+PQ PLVR AT+AFG+  +E+ G+EADD+IATY 
Sbjct: 81  DHSEKTFRNDLYDQYKAHRPPAPEDLVPQFPLVREATKAFGVHCVEMAGYEADDLIATYA 140

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G    I+S+DKDLMQL+     +YD +K+ +++ E V +K+G+ P+K+V +QAL
Sbjct: 141 CQARDAGGEAVIVSSDKDLMQLIGDGVVMYDPMKDRRLEEEAVFEKFGVTPDKVVEVQAL 200

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++ +A+  RLSR+
Sbjct: 201 IGDSVDNVPGAPGIGPKTAAQLIHEYGDLDTLLARAGEIKQPKRRETLINFADQIRLSRE 260

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D PI  P++  ++ D +   L +FL+ +EF  L  RV                 
Sbjct: 261 LVKLTCDAPIPEPIDDFLIRDPDPETLSAFLETMEFKSLARRVG---------------- 304

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                  G A + E    T   ++  +             TP+    E       + I+ 
Sbjct: 305 ------DGKAPQKEGSAFTRQPSAPVA-------------TPRYGQTEVAAPTETHAIDR 345

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           D Y  +   +D+ +W+ +    G   F   TD + + H+    ++++     +     + 
Sbjct: 346 DRYECVQTLEDLDRWIARARAAGVVGFDTETDALSSTHAGLCGVSLAVGPN-EACYIPLT 404

Query: 426 TIFIDLSVHTSQDS-------TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                                  +       L+ LK   E+   LK+G NIKYD  V+ R
Sbjct: 405 HEHEPTGDGGLDFGDGGDARPPLQQIDKPTALARLKDLLEDPSVLKVGQNIKYDLAVMAR 464

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535
            G+ +   +D+ML+SYVL+ G   H +  +A+  L +     K +  + KS      +  
Sbjct: 465 RGVRVAPIDDVMLISYVLEGGLHGHGMDELARLHLGHEPIPFKSVAGTGKSQKSFKHVEL 524

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                +A E+++V L+L  LL+P+L  E L +VYE L++ M  V++ ME  G+++D D L
Sbjct: 525 KSAVCYAAEDADVTLRLHRLLKPRLAAEGLSNVYETLERGMPAVLADMERAGVRVDPDRL 584

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +S+   + +  LEE  + L+G  FN+ SP+Q+G+ILF ++  P G KT +GQW T A 
Sbjct: 585 RSLSSTFGQRMAELEEEAHKLAGRPFNVGSPRQIGEILFGEMNLPGGKKTASGQWGTDAS 644

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +    +P+ + IL+WRQLSK+K TY D+L   ++ +T RVHT Y LA+  TGRLAS
Sbjct: 645 VLEDL-AQSHPLPRTILDWRQLSKLKGTYTDALVAAMDPQTNRVHTSYQLAAATTGRLAS 703

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G++IR+AFI+ P   LISADYSQIELR+LAHI  I  L + F++ L
Sbjct: 704 SDPNLQNIPIRTETGRQIRQAFIASPGHVLISADYSQIELRLLAHIGDIPELKRAFKSGL 763

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+FGV +E +  + RR AK INF IIYGIS F LA QL I + EA  YIK Y
Sbjct: 764 DIHAATASEMFGVPVEGMPSETRRRAKAINFGIIYGISAFGLAAQLGIDQGEAGAYIKTY 823

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPGI +Y+++TK  V++ G+V T+FGRRIH   I+S   + R   ERAAINAPIQG+
Sbjct: 824 FERFPGIRDYMDRTKALVKEQGFVTTVFGRRIHIPAIHSKSGAERQFGERAAINAPIQGA 883

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI RRAMI +  +L +  L T+MLLQ+HDELVFE PE E   A  +I   ME A LP 
Sbjct: 884 AADIIRRAMIRMPGALAEAGLQTRMLLQVHDELVFEAPEAEAERAVAVIRRIMEGAALPA 943

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           + L VPL V  K + NW + +
Sbjct: 944 VALSVPLDVEAKAAGNWDDAH 964


>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
 gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
          Length = 934

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/985 (36%), Positives = 541/985 (54%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P +   G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+    L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LALEAEKAGHAVLISTGDKDMAQLVTSNVTLINTMNNTILGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+ +  N   I        K     + +  
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQGLLQGLGGLDMLYANLDSIATLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++TDV + I    L +   +   L    K  EF + +  V      +  
Sbjct: 241 EMAYLSYKLATIKTDVELDITCADLQVSPLDVDTLQQLFKQYEFKRWLADVEAGVWLEGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         KG  ++      ++                           E  + 
Sbjct: 301 --------------KGAGVKATSAAKSSA----------------------SAVAETGKA 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            ++  ++ + Y  I++     +W++KL+     +F   TD +D   +  I ++ +     
Sbjct: 325 QAEATLSQEGYVTILDEDTFTEWLEKLKKAEVFAFDTETDGLDTLTANLIGLSFAIAPG- 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D                  +L+ LK   E+E  LK+G N+K+D  +L 
Sbjct: 384 EAAYLPVAHDYLDAPT---------QLDRAHVLATLKPLLEDEKALKVGQNLKFDMSLLA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I++RG   D ML SYVLDS    HD+ S++ ++L +     +EI    K  +  ++I
Sbjct: 435 RYDITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFEEIAGKGKKQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L    +LL V+ +++ P++ V+S +E TG+ IDQ
Sbjct: 495 ALEQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNQIEMPLLPVLSHIERTGVLIDQ 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++K L  LE   ++L+ E FNL+S KQL  IL+ K K P   KT  G   T
Sbjct: 555 SILATHSIELTKRLAELEIQAHELAEEPFNLASTKQLQAILYEKQKLPILKKTPGGAPST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+K+TY D LP  IN  + RVHT Y  A T TGR
Sbjct: 615 NEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L + F 
Sbjct: 674 LSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFA 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++KV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 734 AGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYV T+ GRR++  +++S     R   ERAAINAP+
Sbjct: 794 DLYFERYPGVLEYMERTRQQAASQGYVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI V   L+   K   +M++Q+HDELVFEV E  +  ++Q I   ME +
Sbjct: 854 QGTAADIIKRAMIEVDAWLQAQEKPLVRMIMQVHDELVFEVHESVLEESNQRIRELMENS 913

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPLKV++ V  NW E +
Sbjct: 914 MA----LAVPLKVDVGVGANWDEAH 934


>gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
          Length = 928

 Score =  977 bits (2527), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/985 (35%), Positives = 539/985 (54%), Gaps = 74/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL     +   +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLV----QYSPTHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G AV I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LALEAEKKGHAVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVEQKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           A+ GDS DNIPG+PG+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADLSFRGAKTMAAKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV +  P E L + + +   L +     EF + +  +         
Sbjct: 241 DVAFLSYQLATIKTDVELDQPCEALTVSEPDVNALQALFSRFEFKRWLTDLQEGKWLQGT 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                ++  D  + + + +SL                       
Sbjct: 301 KSNRQA--------------QQVLTDEPVASVEATSL----------------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D Y  I++ + +  WV+KL+     +F + TD +D   +  + ++ +     
Sbjct: 324 -----LSADGYITILDQQTLDAWVEKLKNSEVFAFDLETDGLDTLTANIVGLSFAVAPG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D+         +L+ LK   E+    K+G N+KYD+ VL 
Sbjct: 378 EAAYLPVAHDYLDAPEQLDRDA---------VLAQLKPLLEDPDASKVGQNLKYDRGVLK 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I + G   D ML SY+L+S    HD+ S++ +WL++     +EI    K+ +  ++I
Sbjct: 429 NYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L  E     V+E+++ P++ V+S++E  G+ IDQ
Sbjct: 489 ALEQAAHYAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQ 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q S E++  L  LE   ++L+GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 AILAQHSKELTSRLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AF++    ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAFS 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FGV + KV+ + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 728 QGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E T+     NGYVET+ GRR+   +I S  +  R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L+       +M++Q+HDELVFE+  E +  AS+ I   ME +
Sbjct: 848 QGTAADIIKRAMIAVDDWLQKQTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALMEGS 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL V + V +NW + +
Sbjct: 908 MA----LDVPLLVEVGVGDNWDQAH 928


>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
 gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
          Length = 920

 Score =  977 bits (2527), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/981 (36%), Positives = 536/981 (54%), Gaps = 66/981 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     + LVDGSS++YRAF+A P L+   +G P  AI G  NML KL  + +       
Sbjct: 1   MPSNPPIVLVDGSSYLYRAFHAMPPLTT-SNGQPTGAIKGVLNMLRKLQADVKPLR---- 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD    TFR++I+P+YKA RP +P+ L  Q+  +    +A G+P I I G EADD+
Sbjct: 56  MAVIFDAKGKTFRDDIFPEYKAQRPPMPDDLRAQIEPLYDCIRALGLPLISISGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I TY   A + G  V + + DKD+ QLV+    L +T+ +  +D + VI+K+G+PPE++V
Sbjct: 116 IGTYCVEASRLGERVLVSTGDKDIAQLVNEHVTLINTMNDTLLDRDGVIEKFGLPPEQIV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS+DNIPG+P  G KTA   L +YG+L+N++ +A  IK  K  EN+    E  
Sbjct: 176 DYLTLVGDSVDNIPGVPKCGPKTALKWLDDYGSLDNLIAHADEIKG-KVGENLRASLEQI 234

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+L  ++ DVP+   +  L LE+ N  +L+   + LEF   ++ +  + +   A   
Sbjct: 235 PLSRQLATIKCDVPLAQGVMELQLENANTEKLVELYQQLEFKSWLHDLLGSNEAAGA--- 291

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                       G ++        +I T    +   +                       
Sbjct: 292 ---------HQNGASVSIASPTAESIPTQDGFAFEPE----------------------- 319

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                + Y  I++  ++++WV +L      S    T +++   ++ + I+ S    +   
Sbjct: 320 -----NDYHTILDAAELERWVVRLLASDVFSVDTETTSLNYMDAELVGISFSLQAGE--- 371

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +    +   T +      +L+ LK   E E   KIG N+KYD  VL RYG
Sbjct: 372 -----AAYVPVGH--TAIGTPEQLPLDYVLNALKPILEAETPAKIGQNLKYDMNVLARYG 424

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           I++ G   D ML SYVLD+  + HD+ S+A K+L       +++       I  D++   
Sbjct: 425 ITLSGVRFDTMLESYVLDAAATRHDMDSLALKYLGQKTIAFEDVAGKGAKQITFDQVPLL 484

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           Q   +A E+++V L+L   L P++     L  V++ ++ P++ V+S+ME  G +ID   L
Sbjct: 485 QAATYAAEDADVTLKLHQALWPRVQKTPTLTKVFQEIEMPLVGVLSRMEREGARIDVAAL 544

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           KQ S ++ + +  LE   + L+G+ FNL+SPKQLG+IL+ +L+ P   KT  G   T   
Sbjct: 545 KQQSRQLGERMAELEAEAHTLAGQPFNLASPKQLGEILYDQLQLPILKKTPKGAPSTDES 604

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
              Q    D  + K +LE+R  +K+KSTY D LP  +N RT R+HT Y  A   TGRL+S
Sbjct: 605 V-LQDLAHDYELPKVLLEYRGCAKLKSTYTDKLPELVNPRTGRIHTSYHQAVASTGRLSS 663

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+ + G+KIR+AFI+ P   +++ADYSQIELRI+AH++    L   F   L
Sbjct: 664 SDPNLQNIPIRNESGRKIRQAFIAEPGFTMVAADYSQIELRIMAHLSDDESLIDAFARGL 723

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+ GV +E V+  MRR AK +NF +IYG+S F LA QL I R +A  Y+ RY
Sbjct: 724 DIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMSAFGLARQLGISREQAQAYMDRY 783

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           FHR+PG+  Y+E  +      GYVET+FGRR++  E+ +     R   ER AINAP+QGS
Sbjct: 784 FHRYPGVLRYMEDIRKQAHDQGYVETLFGRRLYLPEVRAASKMRRQAAERVAINAPMQGS 843

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI +   L       +M++Q+HDELVFEVP + +  A + I   M  A    
Sbjct: 844 AADIIKRAMIDIDTWLRTQPAKIRMIMQVHDELVFEVPNDVVPDAIEQIQKRMSGAA--- 900

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
            +L+VPL V      NW++ +
Sbjct: 901 -SLKVPLIVEAGTGTNWEQAH 920


>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
 gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
          Length = 930

 Score =  977 bits (2527), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/983 (36%), Positives = 547/983 (55%), Gaps = 70/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S +  E TP+          
Sbjct: 302 TEQ-----------------------PVKMNQYQATSQDQSAV--ENTPK---------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+  W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 327 --IQIDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            T   ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 ATYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I 
Sbjct: 435 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 494 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 554 ALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 614 EEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 673 SSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+ 
Sbjct: 733 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMN 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 793 LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 853 GTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHMESAA- 910

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 911 ---ELVVPLIVEVGVGQNWDEAH 930


>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
 gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
          Length = 922

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 528/985 (53%), Gaps = 80/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P  +   +G P  A+ G  NML  LL+    E    H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAAPNFTN-SEGEPTGAVYGVVNMLRSLLRQFSTE----HIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR++IYP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+ +  +    V++K+GI PE ++   
Sbjct: 121 LATQASKAGMPVLISTGDKDMAQLVDENVTLINTMTDVVMGPAGVVEKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ I  N   I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGVGGLDAIYDNLDAIPALGFRGSKTMPKKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +S +L  ++ DV +      L+  + +   L S    L+F + ++ +    D    
Sbjct: 241 EAAYMSYELATIKLDVELDSAPHELLKTEPDTDELTSLFGKLQFRRWLSEMLDGSDGKIV 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E                                          SE T +K+       
Sbjct: 301 ADEKA----------------------------------------SEPTEKKVV------ 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I++      W+  L      +F   TD +D   +  + ++ +  + K
Sbjct: 315 --APTIDRSGYETILDEASFNSWLATLTAADVVAFDTETDGLDYMTANLVGVSFAVEEGK 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L+ LK   E+    K+G N+K+D  +L 
Sbjct: 373 -AAYVPVAHDYLDAPEQLDRD---------WVLAQLKPLLEDPAQNKVGQNLKFDMSILA 422

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I+M+G   D ML SYV +S    HD+ S+A ++L +     +E+    K  +  ++I
Sbjct: 423 RYDINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L  LL  K+   E+L  V+E ++ P++ V+S++E TG+ ID 
Sbjct: 483 DLDVAGPYAAEDADITLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDS 542

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE   Y+++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 543 MLLSAQSTEIAARLDELETKAYEIAEQEFNLSSPKQLQAILFEKMGLPILKKTPSGAPST 602

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K +LE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 603 NEEVLQELAL-DYPLPKILLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++   G++IR+AFI+P   K+++ DYSQIELRI+AH++    L + F+
Sbjct: 662 LSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFK 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G+ IE V+ + RR AK INF +IYG+S F LA QL + R+EA DY+
Sbjct: 722 QGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLGMGRNEAQDYM 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+    + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 782 NVYFERYPGVLEYMESTRVHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAINAPM 841

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAM+ V + +E  +    ++L+Q+HDELVFEV E E+   S  +   ME A
Sbjct: 842 QGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQESELDAVSADVRRLMELA 901

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL  +    NNW E +
Sbjct: 902 A----ELDVPLIADAGAGNNWDEAH 922


>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
          Length = 935

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/983 (36%), Positives = 545/983 (55%), Gaps = 65/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P +A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTSAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   + + +           ++  
Sbjct: 302 TEQ-----------------------PVKMNQYQATSPAQNSVGNSA---------VENT 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            +  I+   Y  ++   D+  W++KL      +    TD++D   +  + I+ + L+  +
Sbjct: 330 PKIQIDRTKYESLLTQADLTHWIEKLNAAKLIAVDTETDSLDYMSANLVGISFA-LENGE 388

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 389 AAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFAR 439

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + I    KS +  ++I 
Sbjct: 440 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESIAGKGKSQLTFNQIP 498

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID +
Sbjct: 499 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSN 558

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LEE  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 559 ALFMQSNEIATRLTALEEQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 618

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 619 EEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 677

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 678 SSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 737

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++++ + RR+AK INF +IYG+S F L+ QL I R++A  Y+ 
Sbjct: 738 GKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMD 797

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 798 LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 857

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 858 GTAADIIKRAMIKLDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA- 915

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 916 ---ELVVPLIVEVGVGQNWDEAH 935


>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
 gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
          Length = 938

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/985 (35%), Positives = 547/985 (55%), Gaps = 64/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMVRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE++  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    + L+ +  +   L+++   L F   +  +         
Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                             ++      T  + ++ SS++   +  N+           +  
Sbjct: 292 ------------------LDGGTGIVTADEQAKVSSVTASNTANNAAS-----HGAAIPA 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D   W++KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 329 SPAVQIDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSCAVAEG- 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D           +    + +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 388 EAAYIPVAHDYLDAP---------QQLDREWVIAQLKPLLEDESKAKVGQNLKYDASVIA 438

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ I+ 
Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIND 558

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 559 MLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 618

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 619 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGR 677

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 678 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 737

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 738 EGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 797

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 798 DKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNGMRRKAAERAAINAPM 857

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 858 QGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESA 917

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW + +
Sbjct: 918 A----ELAVPLVAEAGHGDNWDQAH 938


>gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
 gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
          Length = 933

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/977 (40%), Positives = 586/977 (59%), Gaps = 53/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + ++ +      +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLHRYVEGNTGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +G+EADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDLYKANRDAMPEDLRPQIPLTRRATEAFNIACKEKEGYEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G   TIIS+DKDLMQLV     + D +K ++ID + V +K+G+ PE++V +
Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVYPERVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+L+ +L  A+ IKQ KRR+ ++++A+  RL
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLDALLERAAEIKQPKRRQTLIDHADQIRL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV+L    P+   LE L +   +  +L+ FL  +EF  L  R+A     +   I   
Sbjct: 247 SRRLVLLDEATPLDFTLEDLEVRTPDPDQLMPFLAEMEFRTLTKRIADQLKVEMPEI--- 303

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                               +  N+   P+         ++  P
Sbjct: 304 ----------------------------------NDTPANAPAAPE---------IADVP 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   Y+++ + + +Q W+ ++   G  +    T  ++   ++ + I++           
Sbjct: 321 FDKAGYSQVDSAEALQGWIDQIYERGYVAVDTETTGLNEMTAELVGISLCVEPGTACYIP 380

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +  S D        +  L  LK   E+E  LKIG N+KYD  V  + GI+
Sbjct: 381 LIHKAAGSDDLFGSDDLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKVFAQVGIT 440

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY +  G   H + ++++++L +T    K +L S KS+I  DK+  S+  
Sbjct: 441 VAPIDDTMLMSYAMHGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKVPLSEAV 500

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++V L+LW   +P L   ++  VYE L++PM+ V++ ME  GI++D+D L ++S
Sbjct: 501 PYAAEDADVTLRLWQQFKPALHRAQVTKVYETLERPMVAVLADMERAGIKVDRDTLSRMS 560

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              S+ + +LE+ +Y L G KFN+ SPKQLG+ILF ++    G K KTG + T A  LE 
Sbjct: 561 NAFSQKMAALEDEVYTLVGRKFNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLED 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ + + IL+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGRLAS +PN
Sbjct: 621 L-ATEHELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 679

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G++IR AF++   K L++ DYSQIELRILAHIA I  L   F++  DIH 
Sbjct: 680 LQNIPIRSEEGRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKTAFDDGQDIHA 739

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPRSEA  +I RYF RF
Sbjct: 740 MTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGFIDRYFERF 799

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y++ TK F +++GYVET+FGRRIH   I + K        RAAINAPIQG+AAD+
Sbjct: 800 PGIRAYMDDTKAFAKEHGYVETLFGRRIHTPNIGA-KGPQAGFAARAAINAPIQGTAADV 858

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI +  ++ +  L  KMLLQ+HDEL+FEV +       +     ME A  P ++L 
Sbjct: 859 IRRAMIRMPAAIAE--LPAKMLLQVHDELLFEVDQGAQDALIEAARSVMESAADPVVHLD 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           V L V+     NW   +
Sbjct: 917 VKLTVDAGQGPNWAVAH 933


>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
 gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
          Length = 956

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/985 (36%), Positives = 544/985 (55%), Gaps = 82/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDGSS++YRAF+A P L+    G P  A+ G  +ML KL+    K+    + AV
Sbjct: 42  EKPIILVDGSSYLYRAFHALPPLTTSS-GQPTGAVRGVASMLRKLI----KDYDPQYMAV 96

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E++ +YK+NRP +P+ L  Q+  +    +A G+P I   G EADD+I T
Sbjct: 97  IFDAKGKTFRDELFEEYKSNRPPMPDDLRAQVQPLHDLIRAMGLPLIIEDGVEADDVIGT 156

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +  I   +G  V I + DKD+ QLV+    L +T+     DIE V +K+G+ PE ++   
Sbjct: 157 FARIFGAQGKPVLISTGDKDMAQLVTEHVTLINTMNNALYDIEGVKQKFGVGPELIIDFL 216

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  L+Q  G+LE+I  N  +I        K   + + E+ 
Sbjct: 217 ALMGDKVDNIPGVPGVGEKTALGLIQGLGSLEDIYANLDKIAELSFRGAKTMAKKLEEHK 276

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ D  ++  L  L L + +   L  + K LEF   ++ + +  D    
Sbjct: 277 EMAFLSYQLATIKLDCELSEDLNDLKLGEPDNESLARYFKELEFKGWLSEILSGADASVV 336

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                       N+E  P          
Sbjct: 337 AA-------------------------------------AEEAGNNEAAPAA-------- 351

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 N D+Y  + +   + +W+ KL+  G  +F   T +++  +++ +  A++  D+ 
Sbjct: 352 ----GFNRDAYDIVYSEAMLDKWLDKLKAAGEFAFDTETTSLNYMNAELVGFAVAVSDKA 407

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
               F                        + ++   K   E++   KIG N+KYD  VL 
Sbjct: 408 AYIPFGHNYPGAP-----------DQIDKQLVIDKFKPLLEDDSLKKIGQNLKYDMSVLA 456

Query: 478 R-YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
              GI++RG   D ML SYVLDS  + HD+ S+A K+L     +  +I       +  ++
Sbjct: 457 EDAGITLRGVAFDTMLESYVLDSVATRHDMDSLALKYLGRKTISFTDIAGKGAKQLTFNQ 516

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           I   +   +A E+++V L+L   L PKL  E +L  V+  ++ P++ V+S++E  G  +D
Sbjct: 517 IGLHEASPYAAEDADVTLRLHQTLWPKLEAEDRLPEVFRDIELPLVTVLSRIERNGTYVD 576

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LLK  S  ++K +  L+E  +D++G++FNL+SPKQLG+IL+ KL+ P   KT  G   
Sbjct: 577 ATLLKHQSQFLAKRMAELQEKAFDIAGQEFNLASPKQLGEILYEKLEIPVIKKTPKGAPS 636

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            TA+ + Q    D P+ + I+++R ++K+K+TY D LP  IN+RT RVHT Y  A T TG
Sbjct: 637 -TAEAVLQELAHDYPLPQVIMDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAVTATG 695

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++++ G+KIR+AF++P  KK+++ DYSQIELRI+AH++    L   F
Sbjct: 696 RLSSSDPNLQNIPVRSEEGRKIRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKGLTDAF 755

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           E  LDIHR  AAE++G  +++VS   RR+AK INF +IYG+S F LA QL +PR EA +Y
Sbjct: 756 EQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAFGLAKQLGLPRKEAQEY 815

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R+PG+ +Y+E T+      GYVET++GRR++  EI+S     R   ERAAINAP
Sbjct: 816 IDLYFERYPGVKKYMEDTRALAIDKGYVETVYGRRLYLPEIHSKNGQRRQGAERAAINAP 875

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI ++AMI VH  LE      KM++Q+HDELVFEV ++++    + +   ME A
Sbjct: 876 MQGTAADIIKKAMIKVHDWLETTHFDAKMIMQVHDELVFEVADDQVDDLVKEVKARMESA 935

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL V+     NW+E +
Sbjct: 936 A----ELKVPLIVDAGAGENWEEAH 956


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/985 (35%), Positives = 539/985 (54%), Gaps = 74/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL     +   +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLV----QYSPTHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G AV I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LALEAEKKGHAVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVEQKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           A+ GDS DNIPG+PG+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADLSFRGAKTMAAKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV +  P E L + + +   L +     EF + +  +         
Sbjct: 241 DVAFLSYQLATIKTDVELDQPCEALTVSEPDVNALQALFSRFEFKRWLTDLQEGKWLQGT 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                ++  D  + + + +SL                       
Sbjct: 301 KSNRQA--------------QQVLTDEPVASVEATSL----------------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D Y  I++ + +  WV+KL+     +F + TD +D   +  + ++ +     
Sbjct: 324 -----LSADGYITILDQQTLDAWVEKLKNSEVFAFDLETDGLDTLTANIVGLSFAVAPG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D+         +L+ LK   E+    K+G N+KYD+ VL 
Sbjct: 378 EAAYLPVAHDYLDAPEQLDRDA---------VLAQLKPLLEDPDASKVGQNLKYDRGVLK 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I + G   D ML SY+L+S    HD+ S++ +WL++     +EI    K+ +  ++I
Sbjct: 429 NYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L  E     V+E+++ P++ V+S++E  G+ IDQ
Sbjct: 489 ALEQAAHYAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQ 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q S E++  L  LE   ++L+GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 AILAQHSKELTSRLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  + RVHT Y  A T TGR
Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AF++    ++++ADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAFS 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FGV + KV+ + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 728 QGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E T+     NGYVET+ GRR+   +I S  +  R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI++   L+       +M++Q+HDELVFE+  E +  AS+ I   ME +
Sbjct: 848 QGTAADIIKRAMIALDDWLQKQTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALMEGS 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL V + V +NW + +
Sbjct: 908 MA----LDVPLLVEVGVGDNWDQAH 928


>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
 gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
          Length = 934

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/985 (36%), Positives = 544/985 (55%), Gaps = 68/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N   LVDGSS+++RA++A P  +   +G P  A+ G  NML  LL+           AV
Sbjct: 6   DNPFILVDGSSYLFRAYHAAPNFTN-GNGEPTGAVYGVINMLRSLLKQFETNR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRN++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRNDMYPEYKANRPPMPDELRCQIEPLHKLIKAMGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G  V I + DKD+ QLV     L +T+    +  E V++K+G+PPE ++   
Sbjct: 121 LASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMGPEGVVEKFGVPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD+ DNIPG+PGIG KTA  LLQ  G L+ +  N   I        K   + + E  
Sbjct: 181 ALMGDASDNIPGVPGIGDKTARALLQGVGGLDTLYANLDDIAPLGFRGSKGMAKKLEENK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++ DV +    E L+ ++ N   LI     + F + +  +    D    
Sbjct: 241 EGAYLSYKLATIKLDVELEQQPEELVKQEPNVDELIQMFGQMNFKRWLTEMLDGSD---- 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         K ++ ET   R T+  + +  S  ++T                   
Sbjct: 297 -------------GKIVSHETSAHRTTSSSSDEGDSAEEET------------------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +    ++   Y  I   +    W++K+      +F   TD++D   +  I ++ S  +  
Sbjct: 325 IVAAQVDRSKYETIFTKEAFSAWLEKVNNAEVTAFDTETDSLDYMVANLIGLSFSVEEG- 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L+ LK + E+E   K+G N+KYD  VL 
Sbjct: 384 EAAYVPVAHDYLDAPEQLDRD---------WVLAQLKPYLEDETKAKVGQNLKYDASVLA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I M+G   D ML SYV +S    H++ S+A ++L +     +EI    K  +  ++I
Sbjct: 435 RYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQI 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E++++ L+L  +L  KL+  EKL  V+  ++ P+I V+S+ME  G+ ID 
Sbjct: 495 ALEEAAPYAAEDADITLRLHNVLHAKLVTDEKLNAVFTDIELPLISVLSRMERKGVYIDD 554

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI + L  LE   ++++G++FN++SPKQL  ILF K++ P   KT +G   T
Sbjct: 555 MLLSAQSLEIGQRLDELETASFEVAGQEFNMNSPKQLQTILFEKMELPVIKKTPSGAAST 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   +  + K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 615 NEEVLQELAL-EYELPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 673

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+   G++IR+AF++P   K+++ DYSQIELRI+AH+++   L + F 
Sbjct: 674 LSSTDPNLQNIPIRNKEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAFS 733

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAE+ GV+IE+V+ + RR AK INF +IYG+S F LA Q+ I R EA DY+
Sbjct: 734 AGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQIGISRGEAQDYM 793

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    + GYVET++GRR++  EIN+  +  R   ERAAINAP+
Sbjct: 794 NVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLYLPEINARNAIRRKAAERAAINAPM 853

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI V   +E        +L+Q+HDELVFEV E+E+   ++ +   ME A
Sbjct: 854 QGTAADIIKKAMILVDNWIEAEGTGRVNLLMQVHDELVFEVKEDELEAITKQVTALMEAA 913

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               ++L VPL       +NW E +
Sbjct: 914 ----VSLDVPLIAESGFGDNWDEAH 934


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
          Length = 930

 Score =  976 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/984 (36%), Positives = 544/984 (55%), Gaps = 70/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNGA-GEPTGAMYGVLNMLRSLIMQYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    QA G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVQAMGLPLLVVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ G  V I + DKD+ QLV+P   L +T+    +  + V  K+G+PPE ++   
Sbjct: 121 LARRAEQAGRHVLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVFDKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L++I  +  R+        K     +L   
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGIGGLQSIYGDIDRVATLSFRGAKTMGAKLLLNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS  L  ++TDV + +  + L ++  +   L +  +  EF + ++         AA
Sbjct: 241 EKADLSYLLATIKTDVDLALDCDDLAIKPLDSATLHTLFQRYEFKRWLSDAQDGSWLTAA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                       +KT      S++ + +++  T   L  E    
Sbjct: 301 Q--------------------------GMKTKAVKPASEE-ANLSAVATAATLSRE---- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I++   ++  + +L+ +G  +F   TD++D   +  + I+ +     
Sbjct: 330 ---------GYQTILDEAALEALIARLQHVGCFAFDTETDSLDVLSANLVGISCADAPG- 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +  +I L+ H   D+       + +L+ L+   E+E   K+G N+KYD  V+ 
Sbjct: 380 -------QAYYIPLA-HDYLDAPA-QLDREWVLARLQPLLEDEKVAKVGQNLKYDIGVMA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R+GI +RG   D ML SYVL+S    HD+ S+A + L +     +E+    K  +  ++I
Sbjct: 431 RHGIILRGVAFDTMLESYVLNSVAGRHDMDSLAARHLDHKTITFEEVAGKGKGQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  E+A E+++V L+L   L P L  E    HV+  +D P++ V+S+ME TG+ ID 
Sbjct: 491 PLEQAAEYAAEDADVTLRLHQRLWPMLESEAGPRHVFCDIDMPLVPVLSRMERTGVLIDS 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q S E++  L +LE+  + L+ E FNLSS KQL  ILF K + P   KT  G   T
Sbjct: 551 TILGQHSQELAVRLNALEQQAHTLADEPFNLSSTKQLQSILFDKQQLPILKKTPGGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++      + + IL++R L+K+KSTY D LP  ++  T RVHT Y  A T TGR
Sbjct: 611 NEEVLVELAEQGYELPQVILDYRTLAKLKSTYTDKLPQMVSPLTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP+++D G++IR+AFI+P   K+++ADYSQIELRI+AH++    L + F 
Sbjct: 671 LSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSKIVAADYSQIELRIMAHLSGDRGLLEAFA 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+   RR AK INF +IYG+S F LA QL I R+EA  Y+
Sbjct: 731 AGKDIHRATAAEVFGLPLEAVTADQRRSAKAINFGLIYGMSAFGLARQLNIGRNEAQRYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    + GYVET+ GRR++  EIN+  +  R   ERAAINAP+
Sbjct: 791 DLYFERYPGVLAYMERTRQQASEQGYVETLDGRRLYLPEINARNAMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEVPE  +      +   ME   
Sbjct: 851 QGTAADIIKRAMIAVDAWLQQSQPQVRMIMQVHDELVFEVPEALVDEVVSHVRTLME--- 907

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              + L VPLKV+I    NW + +
Sbjct: 908 -GSLALAVPLKVDIGCGENWDQAH 930


>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
 gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
          Length = 935

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/983 (36%), Positives = 541/983 (55%), Gaps = 65/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A +    V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLDKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALALLQGIGSMTEIYANLEKVAELPIRGAKKLGEKLLAEKT 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFSRYEFKRWLNEVMNGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E  V                            ++L  Q S+ NS           ++  
Sbjct: 302 TEQPVKINQYQ----------------------ATLPAQNSEGNSA----------VENE 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            +  I+   Y  ++   D+  W++KL      +    TD++D   +  + I+ + L+  +
Sbjct: 330 PKIQIDRTKYEILLTQADLTCWIEKLNAAKLIAVDTETDSLDYMSANLVGISFA-LENGE 388

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN    KIG NIK+D+ +  R
Sbjct: 389 AAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPDIHKIGQNIKFDESIFAR 439

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + I    K  +  ++I 
Sbjct: 440 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESIAGKGKGQLTFNQIP 498

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 499 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 558

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 559 ALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 618

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 619 EEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 677

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 678 SSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 737

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+ 
Sbjct: 738 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMN 797

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 798 LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 857

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 858 GTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA- 915

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 916 ---ELVVPLIVEVGVGQNWDEAH 935


>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
 gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
          Length = 933

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/985 (37%), Positives = 540/985 (54%), Gaps = 69/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P +   G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRTQIEPLHKMVKAMGLPLLVTPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE  G  V I + DKD+ QLV+P   L +T+    +  + V  K+GIPPE ++   
Sbjct: 121 LALEAEMAGHPVLISTGDKDMAQLVTPNVTLINTMNNTVLGPQEVCDKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  LLQ  G L+ +  N   I        K     + +  
Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGRLDVLYDNLGSIATLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS KL  ++T+V + +    L +   +   L    K  EF + +  V T    +  
Sbjct: 241 EIAYLSYKLATIKTNVELEVSYADLNMSAPDIDVLQQLFKRYEFKRWLADVETGAWLENK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         KG  ++T     +                            E+ + 
Sbjct: 301 --------------KGSGVKTAGVAKSASA-----------------------VAEKPKA 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            ++  +  DSY  I++      W+Q+L+     +F   TD +D   +  I ++ +     
Sbjct: 324 AAEAMLPQDSYVAILDEDTFVDWLQRLKKANVFAFDTETDGLDTLSANLIGLSFAIAPG- 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D                  +L  LK   E+E  LK+G N+K+D  VL 
Sbjct: 383 EAAYLPVAHDYLDAPA---------QLDRASVLERLKLLLEDEKVLKVGQNLKFDMGVLA 433

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI++RG   D ML SYVLDS    HD+ ++A ++L +     +EI    K+ +  ++I
Sbjct: 434 RYGINLRGIAYDTMLESYVLDSVGGRHDMDNLADRYLGHKTITFEEIAGKGKNQLTFNQI 493

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           + +Q   +A E+++V L+L L + P+L    +LL V+  +D P++ V+S +E TG+ ID 
Sbjct: 494 ALAQAALYAAEDADVTLRLHLAMWPQLKQSAELLRVFNEIDMPLVPVLSHIERTGVLIDP 553

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++K L  LE   ++L+GE FNL S KQL  IL+ K K P   KT  G   T
Sbjct: 554 AILSVHSQELTKRLGELEIQAHELAGEPFNLVSLKQLQAILYEKQKLPVLKKTPGGAPST 613

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+K+TY D LP  IN  + RVHT Y  A T TGR
Sbjct: 614 NEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATGR 672

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D  ++IR+AFI+P   ++++ADYSQIELRI+AH+++   L + F 
Sbjct: 673 LSSSDPNLQNIPVRNDEDRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQDAGLLKAFA 732

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FGV ++KV+ + RR AK INF +IYG+S F LA QL +PR EA  Y+
Sbjct: 733 EGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIYGMSAFGLARQLGVPRGEAQRYM 792

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF R+PG+ +Y+E+T+    + GYV T+ GRR++  +  S     R   ERAAINAP+
Sbjct: 793 DRYFERYPGVLDYMERTRQQAAEQGYVTTLDGRRLYLPDARSSNGMRRKAAERAAINAPM 852

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI V   +++      +M++Q+HDELVFEV E  I  +SQ I   ME +
Sbjct: 853 QGTAADIIKRAMIEVDAWIQEQGQPLVRMIMQVHDELVFEVHESVIDASSQRIRELMEGS 912

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPLKV++ V  NW E +
Sbjct: 913 MA----LAVPLKVDVGVGANWDEAH 933


>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
 gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
          Length = 930

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/983 (36%), Positives = 543/983 (55%), Gaps = 70/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPSLTNAA-GEPTGAMYGVLNMLKNLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S +  E TP+          
Sbjct: 302 TEQ-----------------------PVKINQYQATSQDQSAV--ENTPK---------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+  W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 327 --IQIDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + I    KS +  ++I 
Sbjct: 435 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESIAGKGKSQLTFNQIP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 494 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 554 ALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 614 EEVLEELAYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 673 SSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+ 
Sbjct: 733 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMD 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 793 LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 853 GTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA- 910

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 911 ---ELVVPLIVEVGVGQNWDEAH 930


>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
 gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
          Length = 930

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/985 (37%), Positives = 546/985 (55%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    +      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRQFASDR----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + +   LI     L F   +N +         
Sbjct: 241 DNAVLSYELATIKLDVELKETPESLLKTEPSIDELIKLYGQLTFKSWLNELLE------G 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V  D +T   +G +  +E+D DT                                 
Sbjct: 295 GTGVVEADESTGVVRGGSASSELDMDT--------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W+ KL+     +F   TD++D   +  + ++ +T +  
Sbjct: 322 -SAVKIDRSQYQTILDEASFYTWLDKLKASDLFAFDTETDSLDYMVTNLVGVSFATDEGV 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+ H   D+  +      +L  LK   E++   K+G N+KYD  VL 
Sbjct: 381 --------AAYVPLA-HDYLDAP-QQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             ++   +A E+++V L+L   L   +  +K L  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 491 DLNEAAPYAAEDADVTLRLHNRLAANIEQDKKLKAVYEEIEMPLVPVLSRIERTGVLIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  +LF K+  P   KT +G   T
Sbjct: 551 MKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 730 DGKDIHTATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +E+H     K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 850 QGTAADIIKKAMLLVGRWIEEHGDGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL  +    +NW + +
Sbjct: 910 A----ELKVPLVADAGHGDNWDQAH 930


>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
 gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
          Length = 941

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/982 (36%), Positives = 542/982 (55%), Gaps = 52/982 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L LVDGSS++YRA++A P L R  +GLP  AI G  NML KL    R +  A + A
Sbjct: 4   SPKTLLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAEYSA 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+E+YP YK +RP +PE L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 59  CVFDAKGKTFRDEMYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVEGVEADDVIG 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A ++G    + + DKDL QLV+    L +T+  E +D   V  K+G+PPE++V  
Sbjct: 119 TLARQAAEQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPAGVNAKFGVPPERIVDY 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+P +G KTA   L E+G L+NI+  A+ IK     EN+    +    
Sbjct: 179 LSLIGDAVDNVPGVPKVGPKTAVKWLTEHGTLDNIMAGAAGIKG-VVGENLRNTLDWLPK 237

Query: 243 SRKLVMLRTDVPITIPLEHLIL---EDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           +R+LV ++TD  ++  +           +  +LI+F     F   +         DA   
Sbjct: 238 ARELVTVKTDCDLSAAVADFHALREIGEDKEKLIAFFTRYGFKTWLREATGESLPDARAQ 297

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                      +   F + +  +S + +E  P +          
Sbjct: 298 ARARA-----------------AAAPAQGGLFDAPAATSSALAAETPPAEDMAP------ 334

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               +   Y  +      + W+Q++E+    +    T ++D   ++ + I++S     + 
Sbjct: 335 ----SEIRYELVTTEAAFEAWMQRIESAPLTAIDTETTSLDPMLAQLVGISLSVEPG-EA 389

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V     D++                +L+ ++ + E++   K+G NIKYD  V   +
Sbjct: 390 CYIPVGHRGPDVA----GMENNGQLSRDTVLARMRAWLEDDSKPKLGQNIKYDIHVFANH 445

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISD 535
           G+++ G   D ML SYVL S R+ H + S+A++ L+    T +E+     S I  D+I  
Sbjct: 446 GVTLCGVAQDTMLESYVLASHRN-HGMDSLAERLLNLKTITYEEVCGKGASQIGFDQIDL 504

Query: 536 SQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           ++  E+A E+++V L+L   + P++     L  VYE ++ P+  V+ ++E  G+ ID + 
Sbjct: 505 ARATEYAAEDADVTLRLHRKMFPQVSAAAGLRRVYEEIEIPVSVVLQKIERNGVLIDAER 564

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   SAE+ + +LSLE+  YD +G+ FNL SPKQ+G+ILF ++K P   KT +G   T  
Sbjct: 565 LAAQSAELGQRMLSLEQAAYDAAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDE 624

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+++   D P+ K +L++R L+K+KSTY D LP  +N  T RVHT Y  A+ +TGRLA
Sbjct: 625 EVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVTGRLA 683

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP++T+ G++IR AFI+ P   ++SADYSQIELRI+AHI+    L + F N 
Sbjct: 684 STEPNLQNIPVRTEEGRRIREAFIASPGSVIVSADYSQIELRIMAHISGDENLLRAFANG 743

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  A+EIFGV+ E VS + RR+AK INF +IYG+S F LA+ L I R  A  YI R
Sbjct: 744 EDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKHYIDR 803

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+ +Y+E T+   R+ GYVET+FGRR+   +IN      R   ERAAINAP+QG
Sbjct: 804 YFMRYPGVAQYMEDTRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAPMQG 863

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + +MI+V   LE  KL T+ ++Q+HDELV EVP++E+      +   M      
Sbjct: 864 TAADLIKLSMIAVQGWLERDKLQTRQIMQVHDELVLEVPQDELDVVKTRLPELMCSVA-- 921

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              LRVPL   +    NW+E +
Sbjct: 922 --QLRVPLVAEVGSGANWEEAH 941


>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
 gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
          Length = 930

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/983 (36%), Positives = 545/983 (55%), Gaps = 70/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S +  E TP+          
Sbjct: 302 TEQ-----------------------PVKMNQYKATSQDQSAV--ENTPK---------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL +    +    TD++D   +  + I+ + L+  +
Sbjct: 327 --IQIDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I 
Sbjct: 435 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 494 LQQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 554 ALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 614 EEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 673 SSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+ 
Sbjct: 733 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMD 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 793 LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   +E A  
Sbjct: 853 GTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHIEAAA- 910

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 911 ---ELVVPLIVEVGVGQNWDEAH 930


>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
          Length = 930

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/983 (36%), Positives = 546/983 (55%), Gaps = 70/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S +  E TP+          
Sbjct: 302 TEQ-----------------------PVKMNQYQATSQDQSAV--ENTPK---------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+  W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 327 --IQIDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            T   ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 ATYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I 
Sbjct: 435 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 494 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 554 ALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 614 EEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 673 SSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+ 
Sbjct: 733 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMD 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 793 LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 853 GTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA- 910

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 911 ---ELVVPLIVEVGVGQNWDEAH 930


>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
 gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
          Length = 923

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/985 (35%), Positives = 535/985 (54%), Gaps = 79/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRA++A P  +   DG P  AI G  NML  +L+    E    H AV
Sbjct: 6   ENPLILIDGSSYLYRAYHAAPNFTN-SDGEPTGAIYGVVNMLRSMLRQFSTE----HIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  IFDAKGKTFRDDMYPEYKANRPPMPDDLRSQIEPLHAVIKAMGLPLIAISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  A ++G  V I + DKD+ QLV     L +T+ +  +D   V+ K+GI PE ++   
Sbjct: 121 LSTQASQQGMPVLISTGDKDMAQLVDQNVTLINTMTDVVMDPAGVVDKFGIGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LL   G L+ +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDTLYDNLDDIAALGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +S KL  ++ DV + +  + L     +   L      L+F + +  +    D    
Sbjct: 241 EAAYMSYKLATIKLDVELDVTPDELRKGVPDTDVLTELFGKLQFRRWLTEMLDGSD---- 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          G  +  E   D   +    +                         
Sbjct: 297 ---------------GRIVADEKSGDVPAEKKAVAP------------------------ 317

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  +++ +    W+++L+   + +F   TD +D   +  + ++ +  + K
Sbjct: 318 ----TIDRSGYETVLDKESFATWLEQLKAAEAFAFDTETDGLDYMTANVVGVSFAIEEGK 373

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D      +D          +L  LK   E+    KIG N+K+D  ++ 
Sbjct: 374 -AAYVPLAHDYLDAPAQLDRD---------WVLEQLKPLLEDPKQAKIGQNLKFDASIVA 423

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L +     +E+    K  +  ++I
Sbjct: 424 RYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI 483

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ L+L   L PK+  + KL HV+E ++ P++ V+S+ME TG+ +D 
Sbjct: 484 DLEQAGPYAAEDADITLRLHNTLYPKVEADDKLKHVFENIEMPLVPVLSRMERTGVYVDS 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  +E+  ++++ ++FNLSSPKQL  ILF K+  P   KT +G   T
Sbjct: 544 MLLGAQSTEIAVRLDEIEKKAFEIAEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K +LE+R L+K+KSTY D LP  +N  T RVHT Y  A T TGR
Sbjct: 604 NEEVLQELAL-DYPLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++    K+++ DYSQIELRI+AH++    L   F 
Sbjct: 663 LSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFR 722

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI  ++IE VS + RR AK INF +IYG+S F LA QL + R+EA +Y+
Sbjct: 723 HGKDIHAATAAEILSLDIENVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYM 782

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E T+N   + GYVET+FGRR++  +I S     R   ERAAINAP+
Sbjct: 783 NVYFERYPGVLEYMESTRNAASEQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI + AMI+V   ++   +   ++L+Q+HDELVFEV E  +   +  +   ME+A
Sbjct: 843 QGTAADIIKLAMIAVDDWVQQQPEGDVRLLMQVHDELVFEVKESALEAVTASVKALMEQA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
            +    L VPL  +    +NW + +
Sbjct: 903 AM----LDVPLIADTGYGDNWDQAH 923


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/987 (34%), Positives = 532/987 (53%), Gaps = 72/987 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K+    LVDGSS+++RAF+  P L+    G    AI G  NML  L+    K+   +H 
Sbjct: 4   SKKPPFILVDGSSYLFRAFHGLPPLTNSK-GQDTGAIYGVVNMLKSLI----KQYNPTHM 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVIFD    TFR++IY +YKANRP +PE L  Q+  +    +A G+P I   G EADD+I
Sbjct: 59  AVIFDAKGKTFRDDIYKEYKANRPPMPEELRSQIEPLHTIIKAMGLPVIVESGVEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A ++G    I + DKD+ QLV+    L +T+  + +D+E V  K+GIPPE ++ 
Sbjct: 119 GTLAKHATEKGIDTLISTGDKDMAQLVNKHVTLINTMTNQLMDVEGVNTKFGIPPELVID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILE 235
             AL GD +DNIPG+PG+G K+A  LL   G ++ I  N  +I        K     + E
Sbjct: 179 FLALKGDKVDNIPGVPGVGDKSAQALLNGIGGIDEIYKNLDKIADLSFRGSKSMAAKMEE 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           Y E ARLS  L  +  D+ +   +E L+    +  +L       EF +    V+      
Sbjct: 239 YEEQARLSYTLATISIDLELDYDVETLMPCQADNEQLRDLFAEYEFKRWHAEVSAL---- 294

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                         +     SS ++ TS  +S+ T      +  
Sbjct: 295 ------------------------------LAGGDTSSATESTSAESSDST------QTS 318

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +  +   I+   Y  +++ +    W+ KL+     +F   T +++   ++ + ++    +
Sbjct: 319 ESATSGDIDKSKYETVLDEETFNTWLGKLQKAQLIAFDTETTSLNYMDAELVGVSFCIEE 378

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     V   + D     S++          +L  LK   E+ + +K+G +IKYDK V
Sbjct: 379 G-EAAYVPVAHDYPDAPTQLSREF---------VLDALKPILESSNIIKVGQHIKYDKNV 428

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L  Y I++ G   D ML SYVL+S    HD+ S+A  +L +     ++I       +  +
Sbjct: 429 LANYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEDIAGKGAKQLTFN 488

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I+  +   +A E++++ L+L   +  KL    +L ++   ++ P+  V+S+ME  G+ I
Sbjct: 489 QIALEEAGPYAAEDADITLRLHNTIWAKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLI 548

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L Q S +++  +  LE+ +++ +GE FNL S KQL  ILF K+  P   KT  G  
Sbjct: 549 DSQRLSQQSQDLAARIAELEKEVHEEAGEPFNLGSTKQLQHILFEKMSLPIIKKTPKGAP 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             T++D+ Q    + P+ K I+E+R L+K+K+TY D LP  IN RT RVHT Y  A T T
Sbjct: 609 S-TSEDVLQELALEYPLPKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITAT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+ + G+++R+AF+     K ++ADYSQIELRI+AH++    L   
Sbjct: 668 GRLSSTDPNLQNIPIRNEEGRRVRQAFVPRKGNKFVAADYSQIELRIMAHLSGDKGLLDA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH+  A+E+FGV +++V+ + RR AK INF +IYG+S F LA QL IPR+EA  
Sbjct: 728 FAHGKDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIPRNEAQK 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+ EY++ T+   ++ GYVET+FGRR++  +I +   + R   ERAAINA
Sbjct: 788 YMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI + AMI V   + ++      M++Q+HDELVFE+ E+++ +  + I   ME
Sbjct: 848 PMQGTAADIIKMAMIKVDDWISKNAADDVTMMMQVHDELVFEIKEDKVDSYVKTINTLME 907

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      L VPL V   V  NW E +
Sbjct: 908 SAA----TLNVPLVVEAGVGENWDEAH 930


>gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
 gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
          Length = 959

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/989 (42%), Positives = 604/989 (61%), Gaps = 61/989 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   L L+DGS +I+RA++  P L+RK DGLPV A++GFCNML KL++ +R +   SH A
Sbjct: 17  KAKRLVLIDGSGYIFRAYHGLPPLTRKSDGLPVGAVSGFCNMLVKLIKENRGDDAPSHLA 76

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANRP  PE L+PQ PLVR AT+AFG+PAIE+ GFEADD+I 
Sbjct: 77  VIFDAGSKTFRNDLYDGYKANRPPPPEDLIPQFPLVRDATRAFGLPAIELAGFEADDLIC 136

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY ++A ++GF VT+IS+DKDLMQLV+    + D VK   +  E VI+K+G+PPE +V  
Sbjct: 137 TYAHLAVQQGFEVTVISSDKDLMQLVNDKVTMMDPVKGTPVGREQVIEKFGVPPELVVDA 196

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAA LL EYG+L+++L  A  IKQ+KRR+ ++++ +   +
Sbjct: 197 QALIGDSVDNVPGAPGIGVKTAAQLLIEYGDLDSVLARAGEIKQEKRRQTLIDFKDQILM 256

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV LR D P+   +   +L+      L +FL A+EF  L  R+  +   ++      
Sbjct: 257 SRELVRLRCDTPVPAEIATFVLKQPEADILAAFLAAMEFNSLARRIGGSLSLESTT---- 312

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                               ++I +    + L+  + +   + P
Sbjct: 313 ----------------------------------ALAQIPTAPISRPLYGVKTELGEKQP 338

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + D+Y  +   + +Q WV++ E     +    TD + A H+K   I++ST         
Sbjct: 339 FDLDAYECVQTIEQLQTWVRRCEQAQVIAVDTETDDLSATHAKLCGISLSTDTN------ 392

Query: 423 KVETIFIDLSVHTSQDSTG------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                +I L    S           K     + ++ LK   EN + LK+G NIKYD  VL
Sbjct: 393 --CACYIPLGHLASDGLDFGGGDDLKQIPLDQAIALLKPVLENRNILKVGQNIKYDLSVL 450

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            RYGI +  ++D MLMSYV++ G   H +  ++Q  L +     K++  S K+      +
Sbjct: 451 KRYGIDVAPYDDTMLMSYVVEGGLHGHGMDELSQLHLGHTPIPFKQVAGSGKTLKSFKFV 510

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  +  ++A E+++V L+LW +L+P+L+ ++L  VYE L++ M   +S+ME+ GI++D  
Sbjct: 511 ALKEATQYAAEDADVTLRLWHVLKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQ 570

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L+ +S +    + ++E+  +   G  FNL+SP+QLG + F ++K P G +T +GQW T 
Sbjct: 571 VLRNLSQDFGTRMNAIEQEAHAHLGRPFNLNSPQQLGVVFFDEMKLPGGKRTASGQWATD 630

Query: 654 AQDLEQINCGDN------PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
            + LE I  G N       + K +L++RQ++K+K TY D+L  + + +TQR+HT + LAS
Sbjct: 631 VKVLEDIAEGKNGTGAGQTLAKLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHLAS 690

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRLAS EPNLQNIPI+T  G+KIR AFI+ P  KLISADYSQIELR+LAHI  I  L
Sbjct: 691 TTTGRLASNEPNLQNIPIRTGEGRKIRTAFIAKPGCKLISADYSQIELRLLAHIGDIEQL 750

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F +  DIH M A+E+FGV +  ++ ++RR AK INF IIYGIS F LA QL I + E
Sbjct: 751 KKAFSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINFGIIYGISGFGLANQLGIDQGE 810

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A+ YIK YF RFPGI +Y++ TK F+R NG+V+T+ GR+IH  EIN    +I+   ERAA
Sbjct: 811 ASRYIKTYFERFPGIKDYMDATKQFLRDNGFVQTLMGRKIHIPEINGKGGAIKAFAERAA 870

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI RRAM+ +   L+     T+MLLQ+HDEL+FE PE E+     +I   
Sbjct: 871 INAPIQGTAADIIRRAMMRMQPRLDAAGFTTRMLLQVHDELIFEAPEAEVAAVIPLIQEV 930

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M+ A LP + + VPL V  K +NNW E +
Sbjct: 931 MQNAALPAVQISVPLVVEAKAANNWDEAH 959


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/988 (43%), Positives = 608/988 (61%), Gaps = 32/988 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +H++L+DGS +I+RAF+A P L+R  DGLPV A+ GFC MLWKLL+ ++     +H  
Sbjct: 26  KGSHVYLIDGSGYIFRAFHALPPLTRPSDGLPVGAVHGFCQMLWKLLRETKASEAPTHMG 85

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD    TFRN+IYP YKA RP  PE L+PQ PL+R A +AF +  +E+ G+EADD+IA
Sbjct: 86  VIFDAGRETFRNQIYPQYKAQRPPPPEELIPQFPLIRDAVRAFNVACVELDGYEADDLIA 145

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY+  A   G  VT++S+DKDLMQLV P   ++D +K ++I  + VI+K+G+PPEK+V +
Sbjct: 146 TYSRRAVDVGGDVTVVSSDKDLMQLVRPGVTMFDGMKSKRIGRDEVIEKFGVPPEKVVDV 205

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GDS+DN+PG+PGIG KTAA L+  YG+L+ +L  A  IKQ KRRE ++E+AE AR+
Sbjct: 206 QSLAGDSVDNVPGVPGIGIKTAAELIAAYGDLDTLLARAGEIKQPKRREKLIEFAEQARI 265

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV+L+ DV +   ++ L + D     L+ FL+ +EF  L  R+A     +A     V
Sbjct: 266 SRSLVLLKDDVVLETAIDALGVRDPQVDALLGFLRMMEFNTLTKRIAEGLGAEAPPPLAV 325

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            +                   +   + Q  +L    +    + +P               
Sbjct: 326 SV-----------------GASVRVSPQQVNLDVIEAGAPQDASPAAAVAAGAAIARAQA 368

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+   Y  +     +++WV++    G  +F   T  + A  ++ + I+++     +    
Sbjct: 369 IDRSKYETVTTRARLEEWVRRAREAGRVAFDTETTDLSALDAELVGISLAVAPG-EACYI 427

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +    D+  +     E L+ +    E+   LKIG NIKYD LV+ R GI 
Sbjct: 428 PLGHTGPSGDLFGGDDNRPQQLAANEALALIGPLLEDPSVLKIGQNIKYDALVMKRRGIE 487

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-------KSRKSSIPIDKISD 535
           +  F+D ML+SY LD GR  H + ++A++ L +              ++KS      +  
Sbjct: 488 IVSFDDTMLLSYALDGGRGQHGMDALAERHLGHMCMTFAQAMGHAPGAKKSDKTFAAMPL 547

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +  E+A E+++V ++LW+ L+P+L  E++  VYE L++P++ V+  ME  GI++D+D+L
Sbjct: 548 DKATEYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDIL 607

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++S   ++  + LEE I  L G KFNL SPKQLG++LF +LK P G KTK+GQW+T A 
Sbjct: 608 SRLSHAFAQRTVRLEEEINGLVGHKFNLGSPKQLGELLFDRLKLPGGKKTKSGQWETRAN 667

Query: 656 DLEQINCGDN------PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            L+ +   +        +I  +LEWRQ++K+KSTY D+LP +IN  T R+HT Y+L +T 
Sbjct: 668 LLDDLAANEEIDGDARRLINTMLEWRQMTKLKSTYTDALPAYINAETGRIHTSYALGATT 727

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS +PNLQNIPI+T  G++IR AFI+    +LISADYSQIELR+LAH+A I  L +
Sbjct: 728 TGRLASSDPNLQNIPIRTKEGREIRTAFIADKGMQLISADYSQIELRVLAHVADIPQLKK 787

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F   LDIH M A+E+FGV ++ +  ++RR AK INF IIYGIS F LA QL I R EA+
Sbjct: 788 AFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFGIIYGISAFGLANQLSISREEAS 847

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIK YF RFPGI +Y++ TK  V  +G+VETIFGRRIHY EIN+   S+R   ERAAIN
Sbjct: 848 DYIKTYFQRFPGIRDYMDATKKQVHAHGHVETIFGRRIHYPEINTKNPSMRGFLERAAIN 907

Query: 890 APIQGSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           APIQGSAADI RRAMI +  +L D KL + +MLLQ+HDELVFEV + E +         M
Sbjct: 908 APIQGSAADIIRRAMIRMPAALVDAKLSSARMLLQVHDELVFEVADNEASALITTARRVM 967

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A  P + L VP+ V+ K +NNW E +
Sbjct: 968 ETAAEPALKLAVPIHVDAKAANNWDEAH 995


>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
 gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
          Length = 982

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/974 (41%), Positives = 583/974 (59%), Gaps = 36/974 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKLL++ + +   +H AVI+
Sbjct: 42  RLFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGD-TPTHLAVIW 100

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   TFRN +Y  YKA+RP  PE L+PQ PLVR AT AFG+PAIE+ G+EADD+IA Y 
Sbjct: 101 DHSEKTFRNALYDQYKAHRPPPPEDLIPQFPLVREATLAFGVPAIELPGYEADDLIAAYA 160

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G    I+S+DKDLMQLV     +YD +K  +I+ E V +K+G+ PEK+V +QAL
Sbjct: 161 CKARDIGGEAIIVSSDKDLMQLVGDGVSMYDPMKGVRIEREQVFEKFGVYPEKVVDVQAL 220

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++ +A+  RLSR 
Sbjct: 221 CGDSVDNVPGAPGIGIKTAAQLITEYGDLDTLLARAGEIKQPKRRETLINFADQIRLSRA 280

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D P+  PL+ L + + +   L +FL+ +EF  L  RV       +A   P  LD
Sbjct: 281 LVKLDCDTPLPQPLDALTVREPDKEALAAFLEQMEFRSLARRVGD----GSAAATPGTLD 336

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 K   +                                         +    I++
Sbjct: 337 RPAAPPKAPVVSVSYMG--------------------------AAARAAAHPVEPVKIDH 370

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  + +   ++ WV K    G  +F   TD + +  +    ++++     +     + 
Sbjct: 371 AAYACVRDLATLKAWVAKATDKGLVAFDTETDALSSATAGLCGVSLAIAPG-EACYIPIS 429

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                  +     +  +     ++++ LK   E+   LK+  N KYD  VL R+GI +  
Sbjct: 430 HCEKADGLAFEAPADIEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARHGIQVAP 489

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
            ED ML+SYVL++G   H +  +++  L +     K++  S K  I    ++  +   +A
Sbjct: 490 IEDTMLISYVLEAGLHGHGMDELSELHLGHKPIPFKQVAGSGKGQISFKHVALPEATAYA 549

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E+++V L+L+  L+P+L    L  VYE L++PM  V++ ME  G+++D + L+ +S E 
Sbjct: 550 AEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRLLSNEF 609

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           S  +   E    +L G  FNL SPKQ+GD+LF +++   G KT TGQW T +  LE +  
Sbjct: 610 SLRMAQFEARAQELVGRPFNLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDVLESLAL 669

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            ++ + + +L+WRQLSK+K TY ++L   I   T RVHT Y+LA+T TGRL+S +PNLQN
Sbjct: 670 -EHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALAATTTGRLSSSDPNLQN 728

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T+ G+KIR+AF++ P   LISADYSQIELR+LAHI  I  L + F+  LDIH M A
Sbjct: 729 IPVRTEEGRKIRKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTA 788

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+F   IE + P +RR AK INF I+YGIS F LA QL I + EA  YIK YF RFPGI
Sbjct: 789 SEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYFERFPGI 848

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y++ TK FVR++GYV TIFGR+I+  +I +  ++ R   ERAAINAPIQG+AAD+ RR
Sbjct: 849 QAYMDATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRR 908

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI +  +LE   L+T+MLLQ+HDELVFE PE E   A  ++   MEKA  P + L +PL
Sbjct: 909 AMIRMPVALEAAGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPL 968

Query: 963 KVNIKVSNNWQEEN 976
            V  + ++NW E +
Sbjct: 969 TVEARAASNWDEAH 982


>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
 gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
          Length = 906

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/975 (36%), Positives = 520/975 (53%), Gaps = 83/975 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSSF+YRAF+A P L+  H G P  A+ G  NML KLLQ        +H AV+FD
Sbjct: 10  LVLVDGSSFLYRAFFALPPLTNSH-GEPTGAVYGVINMLRKLLQT----YDGAHIAVVFD 64

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P   FR+E++  YKA+RP +P+ L  Q+  +    +A G+P +   G EADD+I T   
Sbjct: 65  APGRNFRDELFEHYKAHRPPMPDDLRSQIEPLHQVVRAMGLPMLIEPGVEADDVIGTLAR 124

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + GF V I + DKD+ QLV     L +T+ + ++D+  VI K+G+PPE++V   AL 
Sbjct: 125 QAVERGFRVVISTGDKDMAQLVCDRVTLENTMFDSRLDVNGVIVKFGVPPERIVDYLALV 184

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+P +G KTAA  L EYG+L+ ++  A  I  K   EN+    E   LSR+L
Sbjct: 185 GDTSDNIPGVPKVGPKTAAKWLAEYGSLDALIARAGEIGGKT-GENLRASLELIPLSREL 243

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +R D+P+ +  E L     +   L      LEF      +    D +A + +      
Sbjct: 244 ATIRCDLPLPLTPESLERRPPDKAALRELYTRLEFKT----LLRQLDAEADDPKAAPPVA 299

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              E                                                        
Sbjct: 300 AAPE-----------------------------------------------------VQT 306

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  +++     +W++KLE     +F   T ++D   ++ I ++ +              
Sbjct: 307 RYQAVMDPAAFDRWLEKLEAAELFAFDTETSSLDYMRAEVIGLSFAVEPGA--------A 358

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            ++ L+                +L  L+   E+    K+G ++KYD  VL  +GI +RG 
Sbjct: 359 AYVPLAHDYP--GAPPQLDRAMVLERLRPLLEDPGKAKLGQHLKYDANVLLNHGIMLRGI 416

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHA 542
             D ML SYVL+S  + HD+ S+A+++L       +++       IP  ++S      +A
Sbjct: 417 RHDTMLESYVLNSTATRHDMDSLAERYLDRKTLHYEDVAGKGAKQIPFARVSVEDACRYA 476

Query: 543 IENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+++V L L   L P+L  +  L  VYE ++ P++ V+S++E  G+ +D   L + S E
Sbjct: 477 AEDADVTLCLHRALWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSRE 536

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + + +  +E     ++GE FNL SPKQ+  IL+ KL  P   KT TGQ  T      Q  
Sbjct: 537 LERRMAEVEAEARAVAGETFNLGSPKQIQTILYDKLGLPVIKKTPTGQPSTDESV-LQDL 595

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                + + ILE+R LSK+KSTY D LP+ +N  + RVHT Y  A   TGRL+S +PNLQ
Sbjct: 596 AETFELPRLILEYRSLSKLKSTYTDKLPHQVNPVSGRVHTSYHQAVAATGRLSSSDPNLQ 655

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++T+ G++IR+AF++PP  KL++ADYSQIELRI+AH++    L   F    D+HR  
Sbjct: 656 NIPVRTEEGRRIRQAFVAPPGHKLLAADYSQIELRIMAHLSGDANLLAAFAEDADVHRAT 715

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV +E+V+   RR AK INF +IYG+S F LA QL I +  A  YI  YF R+PG
Sbjct: 716 AAEVFGVALEEVTSSQRRSAKAINFGLIYGMSAFGLAKQLGIQQKLAQGYIDLYFARYPG 775

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+++T+   R+ GYVET+FGRR+H  +I S     R   ER AINAP+QG+AADI +
Sbjct: 776 VRAYMDRTRESARELGYVETLFGRRLHVPDIQSRNGQRRQYAERTAINAPMQGTAADIIK 835

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           RAMI++   +E      +M++Q+HDELVFEV E+ ++ A+  +   M +A      L VP
Sbjct: 836 RAMIALDAWIESSGAPLRMIMQVHDELVFEVAEDFVSEATATVREHMSRAA----ELAVP 891

Query: 962 LKVNIKVSNNWQEEN 976
           L V+I   +NW E +
Sbjct: 892 LMVDIGTGDNWDEAH 906


>gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149]
 gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149]
          Length = 933

 Score =  974 bits (2518), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/977 (41%), Positives = 585/977 (59%), Gaps = 53/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + ++ +      +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLHRYVEGNTGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +G+EADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDLYKANREAMPEDLRPQIPLTRRATEAFNIACKEKEGYEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A K G   TIIS+DKDLMQLV     + D +K ++ID + V +K+G+ PE++V +
Sbjct: 127 TLAVQARKAGGTCTIISSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVYPERVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+++L  A  IKQ KR++ ++++A+  RL
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDSLLERAGEIKQPKRKQTLIDHADQIRL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV+L    P+   LE L + D N  +L+ FL  +EF  L  R+A     +   I   
Sbjct: 247 SRRLVLLDEATPLDFTLEDLEVRDPNPDQLMPFLAEMEFRTLTKRIADQLKVEMPEIN-- 304

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                         + ++  + +     P               
Sbjct: 305 -----------------------------DTPANAPAALEIADVP--------------- 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   Y+++ + K +Q+W+ ++   G  +    T  ++   +  + +++     K     
Sbjct: 321 FDKAGYSQVDSAKALQEWIDQIYERGYVAVDTETTGLNDMTADLVGVSLCVEPGKACYIP 380

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +  S D        +  L  LK   E+E  LKIG N+KYD  +  + GI+
Sbjct: 381 LIHKAASSDDLFGSDDLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKIFAQVGIT 440

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY +  G   H + ++++++L +T    K +L S KS+I  DK+  +   
Sbjct: 441 VAPIDDTMLMSYAMHGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKVPLNDAV 500

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++V L+LW   +P L   ++  VYE L++PM+ V++ ME  GI++D+D L ++S
Sbjct: 501 PYAAEDADVTLRLWQQFKPALHRAQVTRVYETLERPMVAVLADMERAGIKVDRDTLSRMS 560

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              S+ + +LE+ IY L G KFN+ SPKQLG+ILF ++    G K KTG + T A  LE 
Sbjct: 561 NAFSQKMAALEDEIYTLVGRKFNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLED 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ + + IL+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGRLAS +PN
Sbjct: 621 L-ATEHELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 679

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G++IR AF++   K L++ DYSQIELRILAHIA I  L   F++  DIH 
Sbjct: 680 LQNIPIRSEEGRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKAAFDDGQDIHA 739

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +++++P++RR AK INF +IYGIS F LA  LRIPRSEA  +I RYF RF
Sbjct: 740 MTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGFIDRYFERF 799

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y++ TK F +++GYVET+FGRRIH   I + K        RAAINAPIQG+AAD+
Sbjct: 800 PGIRTYMDDTKAFAKEHGYVETLFGRRIHTPNIGA-KGPQAGFAARAAINAPIQGTAADV 858

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI +  ++ D  L  KMLLQ+HDEL+FEV +             ME A  P ++L 
Sbjct: 859 IRRAMIRMPAAIVD--LPAKMLLQVHDELLFEVDQGSQGALIDAARSVMESAADPVVHLD 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           V L V+     NW   +
Sbjct: 917 VKLTVDAGEGPNWAVAH 933


>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
 gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
          Length = 935

 Score =  974 bits (2518), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/983 (36%), Positives = 546/983 (55%), Gaps = 65/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEHYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NAALSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVMNGSDSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S + +           ++  
Sbjct: 302 TEQ-----------------------PVKINQYQATSPAQSSVGNSA---------VENT 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            +  I+   Y  ++   D+ +W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 330 PKIQIDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LENGE 388

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 389 AAYLPLQLDYLDAP---------KTLEKSTALAAIKLILENPNIHKIGQNIKFDESIFAR 439

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I 
Sbjct: 440 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIP 498

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 499 LQQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 558

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 559 ALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 618

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 619 EEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 677

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 678 SSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 737

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+ 
Sbjct: 738 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMD 797

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 798 LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 857

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   +E A  
Sbjct: 858 GTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHIEAAA- 915

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 916 ---ELVVPLIVEVGVGQNWDEAH 935


>gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199]
 gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199]
          Length = 943

 Score =  974 bits (2518), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/983 (40%), Positives = 587/983 (59%), Gaps = 70/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++HL+LVDGS +I+RA++A P ++R  DG PVNA+ GF +ML +L+ +      A H AV
Sbjct: 21  QSHLYLVDGSGYIFRAYHALPPMNR-PDGTPVNAVFGFSSMLVRLIDDL----DADHVAV 75

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRNEIYP+YKA RP+ PE L+PQ  L+R AT+AF +P IE+ GFEADD+IAT
Sbjct: 76  IFDAGRTTFRNEIYPEYKAQRPEAPEDLVPQFSLIRDATRAFNVPCIEMDGFEADDLIAT 135

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           Y  +A + G+ VT++S+DKDLMQLV     ++D +K   I    VI+K+G+PPEK+V +Q
Sbjct: 136 YARLASERGWRVTVVSSDKDLMQLVKDGIDMFDPMKNRPIGRAEVIEKFGVPPEKVVDVQ 195

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           +L GDS+DN+PG+PGIG KTAA L+ EYG+LE++L  A  IKQ KRREN++EYAE AR+S
Sbjct: 196 SLAGDSVDNVPGVPGIGIKTAAQLIDEYGDLESLLARAGEIKQPKRRENLIEYAEKARIS 255

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           ++LV LR DV ++  LE L +   +   ++ FLK   F +L+ R  +             
Sbjct: 256 KQLVTLRDDVEVSEALEALAVRHIDPAMVLPFLKEQGFKRLVARFESE------------ 303

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                          E+    + +T   +  + + +                        
Sbjct: 304 ---------------EVQAGGSSETVAITEPAGEAAG----------------------- 325

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  + +   +++W+   + +G+ +F   T ++D   +  + ++++    K      
Sbjct: 326 ----YELVQDIAALERWIVAAQDLGTVAFDTETTSLDCMRADLVGVSLAVAPGK-ACYIP 380

Query: 424 VETIFI----DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--- 476
           +  +      DL      +   K       ++ LK   EN   LKI HN KYD LVL   
Sbjct: 381 LRHVGRQAQGDLLGAGPAEEAPKQIPFDTAMARLKDLLENPAVLKIAHNAKYDALVLSRP 440

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
              GI++   +D M +SYVL+ G   H +  +A   L +     +E+    K+ I   + 
Sbjct: 441 KNGGITVAPIDDTMCLSYVLEGGLHGHGLDELATLHLGHTNIKFEEVCGKGKTQIGFAEA 500

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +   +A E+++V  +L  LL+P+L+ E++  VYE L++ +I V+  ME  GI++D  
Sbjct: 501 PIDKACAYAAEDADVTFRLHALLKPRLVPERMTTVYETLERALIPVLVGMERNGIKVDPT 560

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L+ +SA+ +K L++LE  I++ +GE FN+ SPKQLG+ILF K+    G K KTG + T 
Sbjct: 561 ILRDMSADFAKRLVTLEGEIHEQAGEPFNVGSPKQLGEILFDKMGLAGGKKGKTGAYGTG 620

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  LE +    +   + +L+WRQ++K+KSTY D+L   IN  T RVHT YS+    TGRL
Sbjct: 621 ADVLETLAAEGSDFARKVLDWRQIAKLKSTYTDALVETINAETGRVHTSYSMVGAATGRL 680

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T+ G+KIR AF++ P   L+S DYSQIELR++A IA I  L + F +
Sbjct: 681 SSNDPNLQNIPIRTEEGRKIRTAFVAEPGNVLLSVDYSQIELRLVADIAGIESLRKAFLD 740

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A+E+FGV + +++P +RR AK INF IIYGIS F LA QL   ++EA  YI 
Sbjct: 741 GIDIHAQTASEVFGVPLSEMTPDIRRKAKAINFGIIYGISGFGLARQLSTSQAEAQAYIN 800

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RFPGI +Y+ + K F R++G+VET FGR++H   I     ++RN  ERAAINAPIQ
Sbjct: 801 AYFERFPGIRDYMTEMKTFAREHGFVETKFGRKVHIQAIRDKNPAMRNFGERAAINAPIQ 860

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ +RAM+ +  +L+  +   +MLLQ+HDEL+FEVPE+++   S ++   ME A  
Sbjct: 861 GTAADVIKRAMVRLPVALDKAQSKARMLLQVHDELLFEVPEDDVEATSALVREVMEGAAA 920

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
           P++NL VPL        +W E +
Sbjct: 921 PQLNLSVPLIAEAGWGKSWSEAH 943


>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 912

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/978 (34%), Positives = 538/978 (55%), Gaps = 75/978 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              L LVDGSS++YRAF+A P L+ K DG P  A+ G  NM+ KLL + R E      AV
Sbjct: 5   RKPLILVDGSSYLYRAFHAMPPLTNK-DGEPTGAMYGVLNMVRKLLDDYRPER----IAV 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  TFR+E++  YKA+RP +P+ L  Q+  ++   +A G+P +E+ G EADD+I T
Sbjct: 60  VFDAPGRTFRDELFDQYKAHRPPMPDELRAQIQPLKDIIRAMGLPLLEVPGVEADDVIGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+ + ++D   V +K+G+PPE+++   
Sbjct: 120 LARQAAEAGQPVVISTGDKDMAQLVDEQVTLLNTMNDTRLDEAGVKEKFGVPPERIIDYL 179

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+P +G KTAA  L ++G+L+ +   A  +K  K  E++  + +   LS
Sbjct: 180 ALVGDSSDNIPGVPRVGPKTAAKWLNQFGSLDALKARADEVKG-KVGESLRAHLDELALS 238

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
             L  +R D+ +    E L   + +  RL  + +  EF +L+  +          +    
Sbjct: 239 EDLATIRCDLDLDQRPEDLKPGESDVERLREYYQRYEFRRLLRELLNGDGDSGGEV---- 294

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                                                       
Sbjct: 295 ----------------------------------------------APAGPGAAGGAGEG 308

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           ++  Y  + +      W+++LE+    +F + T +++   ++ + +A++    +      
Sbjct: 309 DDARYHTVDDADAFDDWLRRLESAELFAFDLETSSLNYMDAEIVGVALAVGAGE------ 362

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               ++ L+ H   D+         +L+ LK   E+    K+G N+KYD  VL RY I +
Sbjct: 363 --AAYVPLA-HEGPDTP-TQLDRDRVLAALKPLLEDPDRAKVGQNLKYDMSVLARYDIHL 418

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQ 539
            G   D ML SYVLDS  S HD+ S+A K+L       +++       IP  +++     
Sbjct: 419 EGVAYDTMLESYVLDSTASRHDMDSLALKYLGRATVKYEDVCGKGAKQIPFAQVAVETAT 478

Query: 540 EHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L   L P+L  E  L+ V+  ++ P++ V+S+ME  G+++D+ LL+Q 
Sbjct: 479 RYAGEDADITLRLHQTLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQ 538

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+++ + +LE+  ++ +   FNLSSPKQ+ +ILF ++  P   KT  G   T    LE
Sbjct: 539 STELAEGMAALEQRAHEEAEGPFNLSSPKQIQEILFERMGLPVLQKTPKGAPSTAESVLE 598

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++      + + IL +R L+K+K+TY D LP  I+ +T RVHT Y  A   TGRL+S +P
Sbjct: 599 ELAARGYELPRLILAYRSLAKLKTTYTDKLPRLIHPKTGRVHTSYHQAVAATGRLSSSDP 658

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T  G++IR+AF++ P  KL++ADYSQ+ELRI+AH++    L Q F    DIH
Sbjct: 659 NLQNIPVRTAEGRRIRKAFVAEPGCKLLAADYSQVELRIMAHLSGDEGLRQAFAEGADIH 718

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AAE+FG+  E+V  + RR AK INF +IYG+S + LA QL I R EA  Y+ RYF R
Sbjct: 719 SATAAEVFGLAPERVGGEQRRAAKAINFGLIYGMSAYGLARQLGIERGEAQAYVDRYFER 778

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ EY+++T+   R+ GYVET+FGRR++  EIN+     R   ER AINAP+QG+AAD
Sbjct: 779 YPGVKEYMDRTRAEARERGYVETLFGRRLYLPEINARNRQRREYAERTAINAPMQGTAAD 838

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + +RAM++V   L +     +M++Q+HDELV EVP  ++   ++ +   M+ A      L
Sbjct: 839 LIKRAMVAVDAWLTEAHSKARMVMQVHDELVLEVPAADVPAVAEGLRERMQAAG----EL 894

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+V++ V+++W+  +
Sbjct: 895 AVPLEVDVGVADDWEGAH 912


>gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 933

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/983 (36%), Positives = 526/983 (53%), Gaps = 67/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + + G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K G  V I + DKD+ QLV     L +T+    +D   VI+K+GIPPE ++   A
Sbjct: 122 ASQASKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  +I        KK  E +L    
Sbjct: 182 LMGDSSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKIAELPIRGAKKLGEKLLAEKA 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV +      L + D N   LI +    EF + +  V         +
Sbjct: 242 MADLSYALATIKTDVELAFSPHELTIGDSNNDALIEYFGRYEFKRWLGEVMNGAGTVTQS 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E  V  IN  +    A   E   +  +K                               
Sbjct: 302 AEQPV-KINHYQATPAAKIDESAVENAVK------------------------------- 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
             + I+   Y  I+   D+ +W++KL      +    TD +D   +  + I+ +  + + 
Sbjct: 330 --FHIDRSRYENILTEADLARWLEKLNAAKLIAVDTETDGLDYMSANLVGISFALENGEA 387

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                       L +H       K       LS LK   EN +  KIG N+K+D  +  R
Sbjct: 388 AY----------LPLHLDYLGAPKTLEKNTALSALKPILENPNIGKIGQNLKFDMTIFAR 437

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            GI ++G   D ML+SY LDS    H++  +A+++L +     ++I    K+ +  ++I 
Sbjct: 438 NGIDLQGIEFDTMLLSYTLDST-GRHNMDDLAKRYLGHQTISFEDIAGKGKNQLTFNQIP 496

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L  +L  KL     L+ +Y+ ++ P++ V+S+ME  G+ ID D
Sbjct: 497 LEQAGEYAAEDADVTMKLQQVLWEKLEPQPGLVALYQSIELPLLSVLSRMERCGVLIDSD 556

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI++ L +LE   Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 557 ALFLQSNEITERLTALEMQAYALAGQPFNLASTKQLQEILFGKLGLPVLQKTPKGAPSTN 616

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 617 EEVLEELAYS-HELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRL 675

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+    K+I+ADYSQIELRI+AH++    L   F  
Sbjct: 676 SSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGLINAFAQ 735

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFG+ +E+V+ + RR+AK INF +IYG+S F    +L I R++A  Y+ 
Sbjct: 736 GKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFVFPARLGISRADAQRYMD 795

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P +  +I   +   +  GYVET+FGRR++  EINS  +  R   ER AINAP+Q
Sbjct: 796 LYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGTERVAINAPMQ 855

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI +   +        M++Q+HDELVFEV  E+I   S +I   ME A  
Sbjct: 856 GTAADIIKRAMIKLD-GITRDDPDIHMIMQVHDELVFEVRSEKIAFFSDLIKQHMEAAA- 913

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V++ V  NW E +
Sbjct: 914 ---ELVVPLIVDVGVGENWDEAH 933


>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 938

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/985 (36%), Positives = 549/985 (55%), Gaps = 64/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE++  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    + L+ +  +   L+++   L F   +  +         
Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMAWYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                             ++      T  + ++ SS++   +  N            + +
Sbjct: 292 ------------------LDGGTGIVTADEQAKASSVTASNAANN-----AASNAAAIPE 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D   W++KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 329 SPAAQIDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSFAVAEG- 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 388 EAAYIPVAHDYLDAPQQLDRD---------WVIAQLKPLLEDESKAKVGQNLKYDASVMA 438

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDD 558

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 559 MLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 618

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 619 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGR 677

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 678 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 737

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 738 EGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 797

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S  +  R   ERAAINAP+
Sbjct: 798 DKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPM 857

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 858 QGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESA 917

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW++ +
Sbjct: 918 A----ELAVPLVAEAGHGDNWEQAH 938


>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
 gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
          Length = 930

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/983 (36%), Positives = 546/983 (55%), Gaps = 70/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S +  E TP+          
Sbjct: 302 TEQ-----------------------PVKMNQYQATSQDQSAV--ENTPK---------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+  W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 327 --IQIDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            T   ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 ATYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I 
Sbjct: 435 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 494 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 554 ALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTN 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 614 EEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 673 SSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+ 
Sbjct: 733 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRLDAQKYMD 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 793 LYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 853 GTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA- 910

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 911 ---ELVVPLIVEVGVGQNWDEAH 930


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/987 (42%), Positives = 595/987 (60%), Gaps = 13/987 (1%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           + +H+FLVDGSSF++RA++ +     K     D LP  A+  FC  + + ++        
Sbjct: 10  RGSHVFLVDGSSFVFRAYFQSIRQDAKYNYRSDRLPTGAVRLFCAKILQFVREGAAGVKP 69

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H A+IFD    +FR EIYP+YKA+RP  PE L+PQ PL+R A +AFG+  IE   +EAD
Sbjct: 70  THLAIIFDKSEKSFRKEIYPEYKAHRPDPPEDLVPQFPLMRAAVRAFGLTPIEQDLYEAD 129

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D+IATY   A K+G  V I+S DKDLMQLV P   +YD          I    V+  +G+
Sbjct: 130 DLIATYAEQARKKGADVLIVSADKDLMQLVGPGVTMYDPASGAREERLITEAEVVDYFGV 189

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           PPEK+V +QAL GDS DN+PG  GIG KTAA L+ EYG+L+ +L  A  IKQ KRRE + 
Sbjct: 190 PPEKVVDVQALAGDSTDNVPGAKGIGVKTAAQLINEYGDLDTLLEKAPGIKQPKRREALT 249

Query: 235 E--YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           E    +  RLS+KLV L  D P+   L+ L LE+ +  +L+SFL+A+EFT +  RVA  Y
Sbjct: 250 EPEAVKLIRLSKKLVELVRDAPVETKLDELGLEEPDAKKLVSFLQAMEFTTITRRVAELY 309

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             DA +IEP    +     +    E   D        + ++   +        TP  L  
Sbjct: 310 GVDAHDIEPDADFVGPAGWRARNGEVREDAPAAAPKGEKTAGKSKHGGKAEGMTPASLAA 369

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            R  +     I+  +Y  + +   +++WV +    G  +    T ++D    + + ++++
Sbjct: 370 VRRAEAQATKIDRSAYETVTSLASLEKWVAEATDAGVVAVDTETTSLDPMSCELVGVSLA 429

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               +            D  +              + ++ LK   E++  LKI HN+KYD
Sbjct: 430 ITPGRACYIPLQHREPGDGDLFGGAALLQGQIPLDKAIATLKPLLEDDAVLKIAHNMKYD 489

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            LVL RYG+ +   ED ML+SY LD+GR++H +  +  K L +       +  S ++ I 
Sbjct: 490 LLVLARYGVDVAPIEDTMLISYTLDTGRNNHGLDELTLKHLGHENIPFSAVAGSGRNFIG 549

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +++  +  E+A E+++V L+LW  L+P+L  E + +VYE L++PM+  ++ ME  GI 
Sbjct: 550 FARVALDRATEYATEDADVTLRLWRALKPRLAAEHMTNVYETLERPMVATLAGMERRGIT 609

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID+ +L ++S E ++++  LE +I+DL+GE FNL SPKQLGDILF K+  P   KT TG 
Sbjct: 610 IDRAMLSRLSGEFAQDMARLEADIFDLAGETFNLGSPKQLGDILFGKMGLPGAKKTATGA 669

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           W T+A  LE +    N   + IL+WRQLSK+KSTY D+LP  +NK T RVHT Y+LA+T 
Sbjct: 670 WSTSASVLEDLANEGNDFARRILDWRQLSKLKSTYTDALPGFVNKETGRVHTSYALAATT 729

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++ + G+KIR+AF++ P   LISADYSQIELR+LAHIA I  L +
Sbjct: 730 TGRLSSSDPNLQNIPVRNEAGRKIRKAFVASPGHVLISADYSQIELRLLAHIADIPQLKK 789

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F + +DIH M A+E+FGV ++ + P++RR AK INF IIYGIS F LA QL IPR EA 
Sbjct: 790 AFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYGISAFGLANQLSIPREEAG 849

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YIKRYF RFPGI +Y+E TK  VR+ G V TIFGR  H+  I S  +S R   ERAAIN
Sbjct: 850 AYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVCHFPRIGSANASDRAFYERAAIN 909

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQG+AADI RRAM+ +  +L    L  +MLLQ+HDELVFE P++E     +I    ME
Sbjct: 910 APIQGAAADIIRRAMVRMDDALASEGLKAQMLLQVHDELVFEAPKKEAEATIEIARRVME 969

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           +A  P + L VPLKV+ + + NW E +
Sbjct: 970 EAPAPAVQLAVPLKVDARAAANWDEAH 996


>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
 gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
 gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
 gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
 gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
          Length = 930

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/983 (36%), Positives = 546/983 (55%), Gaps = 70/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P +A+ G  NML  L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPSLTNAA-GEPTSAMYGVLNMLKSLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRKGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKN 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S   S +  E TP+          
Sbjct: 302 TEQ-----------------------PVKMNQYKATSQDQSAV--ENTPK---------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL      +    TD++D   +  + I+ + L+  +
Sbjct: 327 --IQIDRTKYETLLTQADLTRWIEKLNAAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I 
Sbjct: 435 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 494 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL+ P   KT  G   T 
Sbjct: 554 ALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLELPVLQKTPKGAPSTN 613

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE+++   + + K +++ R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 614 EEVLEELSYS-HELPKILVKHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G+ IR+AFI+     +++ADYSQIELRI+AH++    L   F  
Sbjct: 673 SSSDPNLQNIPIRNEEGRHIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQ 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+ 
Sbjct: 733 GKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMD 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+Q
Sbjct: 793 LYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A  
Sbjct: 853 GTAADIIKRAMIKLDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA- 910

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V + V  NW E +
Sbjct: 911 ---ELVVPLIVEVGVGQNWDEAH 930


>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
 gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
          Length = 938

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/985 (36%), Positives = 546/985 (55%), Gaps = 64/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE++  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    + L+ +  +   L+++   L F   +  +         
Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAFKSWLTELLDG------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                          GI    E  R +++  S  ++ +   +    E             
Sbjct: 295 -------------GTGIVTADEQARASSVTASNAANNAASNAAAIPES------------ 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D   W++KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 330 -PAAQIDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSFAVAEG- 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D           +      +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 388 EAAYIPVAHDYLDAP---------QQLDRAWVIAQLKPLLEDESKAKVGQNLKYDASVMA 438

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDD 558

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 559 MLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 618

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 619 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 677

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 678 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 737

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 738 EGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 797

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 798 DKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNGIRRKAAERAAINAPM 857

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 858 QGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESA 917

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW++ +
Sbjct: 918 A----ELAVPLVAEAGHGDNWEQAH 938


>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
 gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
          Length = 951

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1000 (37%), Positives = 551/1000 (55%), Gaps = 73/1000 (7%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  EN L LVDGSS++YRAFYA P L+    G P  A+ G  NML  L+   +     
Sbjct: 1   MAKIAENPLVLVDGSSYLYRAFYAFPPLTN-SLGEPTGAMYGVLNMLKSLIAQVQ----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV+FD    TFR+EI+  YK++RP +P+ L  Q+  +    +A GIP + ++G EAD
Sbjct: 56  THIAVVFDAKGKTFRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A ++G  V I + DKD+ QLV     L +T+    +D + VI K+GIPPE 
Sbjct: 116 DVIGTLAVQASQQGKNVLISTGDKDMAQLVDDNIMLINTMNNSLLDRDGVIDKYGIPPEL 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
           +V   AL GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E 
Sbjct: 176 IVDYLALMGDSSDNIPGVSGVGEKTALGLLQGIGSMAEIYANLEKVAGLSVRGAKKLGEK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +      A LS  L  ++T+V + I  + L+L   N  +LI +    EF + +N V    
Sbjct: 236 LSSAKADADLSYLLATIKTNVELDITPDQLVLGQNNQDQLIEYFARYEFKRWLNEV---- 291

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                        I+   +   A + EI  D T    Q +S S+  S +           
Sbjct: 292 -------------ISGESSLTKATQQEIKLDKT----QTNSASESKSAV----------- 323

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                     I+  SY  I   + +  W++KL+     +    TD +D   +  + I+ +
Sbjct: 324 -----KKTIKIDRTSYETIDTQEKLNSWLEKLQQADLIAVDTETDALDPMRANLVGISFA 378

Query: 413 TLDQKDDTSFKVE------TIFIDLSVHTSQDS----TGKNTLTKE-ILSYLKKFFENEH 461
             + +                  DL   + Q++      KN L KE  L+ LK   EN  
Sbjct: 379 LTNGEACYIPLAHKQAVKEMTQTDLFTESEQNAEQFELVKNQLNKETCLAQLKPLLENPS 438

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE- 519
             KIG NIKYD  +   + I + G   D ML SYVLDS    H++ ++++++L +   E 
Sbjct: 439 IQKIGQNIKYDLTIFANHHIQLNGVCFDTMLQSYVLDST-GRHNMGALSERYLGHQVIEF 497

Query: 520 --ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPM 576
             I    K  +  DKI+ +Q  E+A E++++ ++L  +L  +L     L+ V+  ++ P+
Sbjct: 498 ESIAGKGKKQVTFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPL 557

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+S ME  G+ ID   L + S +I++ L +LE+ +Y  +G +FNL+S KQL +ILFTK
Sbjct: 558 VKVLSTMERNGVLIDSQALLKQSEKIARRLTALEQQVYQEAGAEFNLASTKQLQEILFTK 617

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L  P  AKT  G   T    LE +    + + K ++E R L+K+KSTY D LP+ +NK+T
Sbjct: 618 LALPIIAKTPKGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKT 677

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT Y  A T TGRL+S +PNLQNIPIK + G+ IR+AFI+    K+I+ADYSQIELR
Sbjct: 678 GRVHTSYHQAVTATGRLSSSDPNLQNIPIKNEEGRCIRQAFIARKGYKIIAADYSQIELR 737

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH+++   L   F    DIHR  AAEIFG+ + +V+ + RR AK INF +IYG+S F 
Sbjct: 738 IMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMSSFG 797

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ QL I R+ A  Y+  YF R+PG+  ++   +   ++ GYVET+FGRR++  EINS  
Sbjct: 798 LSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEINSSN 857

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           +  R   ER AINAP+QG+AADI + AMI++H  ++ + +   M++Q+HDELVFEV E +
Sbjct: 858 AIRRKGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDIQ--MIMQVHDELVFEVKENK 915

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   S +I   ME A     +L VPL V+I V +NW E +
Sbjct: 916 VDEYSALIKSLMENAA----HLSVPLIVDIGVGDNWDEAH 951


>gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46]
 gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46]
          Length = 1016

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1010 (41%), Positives = 609/1010 (60%), Gaps = 47/1010 (4%)

Query: 5    NHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            + + LVDGSSFI+RA++ +         R  DG+P  A+  FC  + + +Q        S
Sbjct: 16   DQVLLVDGSSFIFRAYFQSINQPERYNFRPSDGMPTGAVRLFCAKIAQFVQEGAAGIQPS 75

Query: 60   HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            H  ++FD    +FR EI+PDYK +RP  P+ L  Q+PL+R A +AFG+  IE++ +EADD
Sbjct: 76   HLGIVFDKSEGSFRKEIFPDYKGHRPDAPDDLKRQMPLMREAVRAFGLEPIELERYEADD 135

Query: 120  IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHVI 169
            +IATY   AE  G  V I+S+DKDLMQLV      YD             E  +D   ++
Sbjct: 136  LIATYARQAEARGAGVIIVSSDKDLMQLVGELVRFYDFESGQKGKPGYRPERNLDAAAIV 195

Query: 170  KKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            ++W G+ P ++    AL GD+ DN+PG+PGIG KTAA LL+E+G+LE +L  A+ IKQ K
Sbjct: 196  ERWEGLSPAQIGDALALIGDTSDNVPGVPGIGLKTAAALLKEFGSLEALLERAAEIKQPK 255

Query: 229  RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            RRE +L + + ARLSR+LV L   VP+ +PLE L L   +  RL+ FLKA+EF  L  R+
Sbjct: 256  RRETLLAHLDQARLSRRLVTLDEAVPVPVPLEALRLRKPDPERLVGFLKAMEFNTLTRRI 315

Query: 289  ATTYDCDAANIEPVVL-----DINTTENKGIAIETEIDRDTT-----IKTSQFSSL---- 334
            A+    D   + P               KG +  T    D        +T  F+ L    
Sbjct: 316  ASLLHVDPEAVRPDPALLPGGAAAYANGKGGSDATPFFGDEATAPPAPETDPFADLDLPD 375

Query: 335  SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
            +    +  +E TP ++   R  +  +   +  SY  I     +  W+ +    G  +   
Sbjct: 376  APPRPRGPAEPTPGQVVAARAAEAVKP-FDTASYETITRLDRLDAWIAEAAEAGVVAVDT 434

Query: 395  ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-----I 449
             T+ +DA  +  + ++++T   +          +I L+   S+D  G+  L  +     +
Sbjct: 435  ETNALDAHRADLVGVSLATAPGR--------AAYIPLAHRGSEDLFGEGLLPDQLPWDAV 486

Query: 450  LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             + LK   E+   LK+G N+KYD LVL R+GI ++ ++D ML+SYVLD+G+ SH +  +A
Sbjct: 487  RARLKPLLEDPAVLKVGQNVKYDWLVLVRHGIEIQPYDDTMLISYVLDAGKGSHGMDELA 546

Query: 510  QKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            ++ L +      ++  + ++ +  D++   +   +A E+++V L+LW L++P+L  E   
Sbjct: 547  RRHLGHQPITFADVTGTGRAKVTFDRVPLDKATAYAAEDADVTLRLWRLMKPRLAAEHRA 606

Query: 567  HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
             VYE L++P++ V+++ME  GI++D+D+L ++S + S++L  LE  I +++GE F++SSP
Sbjct: 607  TVYETLERPLVPVLARMEREGIRVDRDMLSRLSGDFSQSLARLEAEIQEMAGETFSVSSP 666

Query: 627  KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
            KQ+GDILF KL  P   KT +GQW T A  LE++    +P+ + ILEWRQLSK+KSTY D
Sbjct: 667  KQIGDILFGKLGLPGAKKTPSGQWATPATLLEELATQGHPLPRKILEWRQLSKLKSTYTD 726

Query: 687  SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            SL  H  + + RVHT ++LA+T TGRL+S +PNLQNIPI+T+ G++IR+AF++    +LI
Sbjct: 727  SLQEHAERESDRVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADAGHQLI 786

Query: 747  SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            SADYSQIELR+LAH+A I  L Q F + LDIH   A+ +FGV + +++P +RR AKTINF
Sbjct: 787  SADYSQIELRLLAHMADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTINF 846

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
             IIYGIS F LA +L IP+ EA+ +IK+YF RFPGI  YIE TK   R  GYV T+FGR 
Sbjct: 847  GIIYGISAFGLADRLGIPQGEASAFIKQYFERFPGIRAYIEDTKKACRDKGYVTTLFGRV 906

Query: 867  IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
             HY +I S     R   ER AINAPIQG+AADI RRAM+ +  +L    L T+MLLQ+HD
Sbjct: 907  CHYPQIRSNNPQERASVERQAINAPIQGTAADIIRRAMVRMEGALAGAGLTTRMLLQVHD 966

Query: 927  ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ELVFE P++E+  A  II   ME+A  P + L VPL V  K + NWQE +
Sbjct: 967  ELVFEAPQDEVARALPIIARVMEEAPQPAVRLTVPLAVEAKAAANWQEAH 1016


>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
 gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
          Length = 967

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/974 (41%), Positives = 588/974 (60%), Gaps = 36/974 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKLL++ + +   +H AVI+
Sbjct: 27  RLFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGD-TPTHLAVIW 85

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   TFRN +Y  YKA+RP  PE L+PQ PLVR AT AFG+PAIE+ G+EADD+IA Y 
Sbjct: 86  DHSEKTFRNALYDQYKAHRPPPPEDLIPQFPLVREATLAFGVPAIELPGYEADDLIAAYA 145

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G    I+S+DKDLMQLV     +YD +K  +I+ E V +K+G+ PEK+V +QAL
Sbjct: 146 CKARDIGGEAIIVSSDKDLMQLVGDGVSMYDPMKGVRIEREQVFEKFGVYPEKVVDVQAL 205

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE ++ +A+  RLSR 
Sbjct: 206 CGDSVDNVPGAPGIGIKTAAQLITEYGDLDTLLARAGEIKQPKRRETLINFADQIRLSRA 265

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D P+  PL+ L + + +   L +FL+ +EF  L  RV                 
Sbjct: 266 LVKLDCDTPLPQPLDALTVREPDKEALAAFLEQMEFRSLARRVG---------------- 309

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
               +    A    +DR      +   S+S   +   +   P +             I++
Sbjct: 310 ----DGSAAATPGTLDRPAAPPKAPVVSVSYMGAAARAAAHPVE----------PVKIDH 355

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  + +   ++ WV K    G  +F   TD + +  +    ++++     +     + 
Sbjct: 356 AAYACVRDLATLKAWVAKATDKGLVAFDTETDALSSATAGLCGVSLAIAPG-EACYIPIS 414

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                  +     +  +     ++++ LK   E+   LK+  N KYD  VL R+GI +  
Sbjct: 415 HCEKADGLAFEAPADIEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARHGIQVAP 474

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
            ED ML+SYVL++G   H +  +++  L +     K++  S K  I    ++  +   +A
Sbjct: 475 IEDTMLISYVLEAGLHGHGMDELSELHLGHKPIPFKQVAGSGKGQISFKHVALPEATAYA 534

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E+++V L+L+  L+P+L    L  VYE L++PM  V++ ME  G+++D + L+ +S E 
Sbjct: 535 AEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRLLSNEF 594

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           S  +   E    +L G  FNL SPKQ+GD+LF +++   G KT TGQW T +  LE +  
Sbjct: 595 SLRMAQFEARAQELVGRPFNLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDVLESLAL 654

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            ++ + + +L+WRQLSK+K TY ++L   I   T RVHT Y+LA+T TGRL+S +PNLQN
Sbjct: 655 -EHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALAATTTGRLSSSDPNLQN 713

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T+ G+KIR+AF++ P   LISADYSQIELR+LAHI  I  L + F+  LDIH M A
Sbjct: 714 IPVRTEEGRKIRKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTA 773

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+F   IE + P +RR AK INF I+YGIS F LA QL I + EA  YIK YF RFPGI
Sbjct: 774 SEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYFERFPGI 833

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y++ TK FVR++GYV TIFGR+I+  +I +  ++ R   ERAAINAPIQG+AAD+ RR
Sbjct: 834 QAYMDATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAAADVMRR 893

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI +  +LE   L+T+MLLQ+HDELVFE PE E   A  ++   MEKA  P + L +PL
Sbjct: 894 AMIRMPVALEAAGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPL 953

Query: 963 KVNIKVSNNWQEEN 976
            V  + ++NW E +
Sbjct: 954 TVEARAASNWDEAH 967


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/985 (36%), Positives = 538/985 (54%), Gaps = 74/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLMQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVKAMGLPLLAVTGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G  V I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LAQEAEKQGRPVLISTGDKDMAQLVTPGITLINTMTNTVLGPEEVEQKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           A+ GDS DNIPG+PG+G KTA  LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLEKVADLSFRGAKTMAAKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L + + +   L +     EF + +  +         
Sbjct: 241 DVAFLSYQLATIKTDVELELGCEQLTVNEPDVAVLQTLFSRYEFKRWLVDLQEGKWLQGT 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         KG A   +   D     ++ +S+                       
Sbjct: 301 --------------KGSAPAQQALADQPAAKAETASV----------------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                +++D Y  I++     +W++KL+     +F + TD++D   +  + +A +     
Sbjct: 324 -----LSSDGYVTILDQDTFSRWLEKLKKSDVFAFDLETDSLDTLSANIVGLAFAVAPG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D                  +L+ LK   E+    K+G N+KYD+ VL 
Sbjct: 378 EAAYLPVAHDYLDAP---------DQLDRAAVLAQLKPLLEDSKAAKVGQNLKYDRGVLK 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I + G   D ML SY L+S    HD+ S+A +WL++     +EI    K+ +  ++I
Sbjct: 429 NYDIELNGIKYDTMLESYCLNSVGGKHDMDSLAARWLNHKTVTFEEIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + P+L  E     V+  ++ P++ V+S++E  G+ IDQ
Sbjct: 489 AIEQAGHYAAEDADVTLQLHLKMWPELEKEAGPKKVFTEIEMPLLKVISRVERNGVLIDQ 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L + S E++  L  LE+  +DL+GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 549 NILAKHSQELTTRLAELEQQAHDLAGEPFNLSSTKQLQTILFEKQGIKPTKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPVTGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+ P K++++ADYSQIELRI+AH+++   L   F 
Sbjct: 668 LSSTDPNLQNIPVRNDEGRRIRQAFIAGPDKRIVAADYSQIELRIMAHLSQDKGLLAAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FGV + KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 728 QGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+      GYVET+ GRR+   +I S  +  R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLRYMEETREQAAAKGYVETLDGRRLWLPDITSSNAIRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V   L + K    KM++Q+HDELVFE+ ++ + +AS  I   ME  
Sbjct: 848 QGTAADIIKRAMIAVDGWLLEQKDDKVKMIMQVHDELVFEIHQDAVASASDKIRQLME-- 905

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL V +    NW + +
Sbjct: 906 --GSMKLDVPLLVEVGTGENWDQAH 928


>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
 gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
          Length = 926

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/987 (36%), Positives = 548/987 (55%), Gaps = 72/987 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A P L+    G P  A+ G  NM+ +L    +K+   S 
Sbjct: 1   MDTTTPLILVDGSSYLYRAYHALPPLTNSK-GKPTGAVKGVINMMRRL----QKDYPDST 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD    TFR+EIY +YKANRP +P+ L  Q+  +    +A G+P + I G EADD+
Sbjct: 56  HVVVFDAKGKTFRDEIYTEYKANRPPMPDDLREQIAPIHQIIEAMGMPMLIIDGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A      V I + DKD+ QLV+    L +T+    +D   VI+K+GIPPE ++
Sbjct: 116 IGTLAVQATAAKQPVVISTGDKDIAQLVNEHITLINTMNNSTMDRAGVIEKFGIPPELII 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENIL 234
              AL GD  DNIPG+PG+G KTA  LLQ  G+L++I  N   +        K     +L
Sbjct: 176 DYLALLGDKSDNIPGVPGVGEKTALGLLQGLGSLDDIYANLDDVAGLAFRGAKTMLPKLL 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           +  E A LS +L  ++TDV + + L  L   + +   L+S  K +EF   I+    T   
Sbjct: 236 DNKELAYLSYQLATIKTDVEMPVHLSELKNAEPDKAALLSLFKHMEFKTWIDE-GQTNSQ 294

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
             +N +      +  E  G+                 ++ +D+ + +             
Sbjct: 295 TNSNTKAAAASKSPVEQDGL----------------VAAPADKPAVV------------- 325

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y  ++  +D+  W++K+++    +    T ++D   +K + I++ST 
Sbjct: 326 -----------KDYQIVLTEQDLATWIEKIKSADLVAVDTETTSLDYMRAKLVGISLSTA 374

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             +          +I  +         +    +  L  LK + E+  F K+G N+KYD  
Sbjct: 375 PGE--------ACYIPFAHDYM--GAPEQLQPEFALEKLKPYLEDPAFPKVGQNLKYDMS 424

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPI 530
           VL ++GIS+RG   D ML SYVLDS  S HD+ S+A  +L        ++     + +  
Sbjct: 425 VLAQHGISLRGITFDTMLESYVLDSVASRHDMDSLALNYLGEETIKFADVAGKGAAQLTF 484

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++++  Q   +A E++++ L+L   L P++  E  L  V+E ++ P++ V+S++E TG  
Sbjct: 485 NQVALDQAGPYAAEDADITLRLHQTLWPRVAAEPTLTKVFEEIELPLVPVLSRIERTGAL 544

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D  LL Q S E+S  L  LE   ++L+G++FNL+SPKQLG+ILF KL+ P   KT  G 
Sbjct: 545 VDDTLLFQQSQELSARLGELETEAWELAGQQFNLASPKQLGEILFEKLQIPVLKKTAKGA 604

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
              T +++ Q    D P+ K +LE R L+K+KSTY D LP  IN  T R+HT Y  + T 
Sbjct: 605 PS-TKEEVLQELALDYPLPKVLLEHRGLAKLKSTYTDKLPTMINSVTGRIHTSYHQSGTA 663

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI++  G+++R+AF++ P  KL++ADYSQIELRI+AH+++   L  
Sbjct: 664 TGRLSSSDPNLQNIPIRSAEGRRVRQAFVAAPGCKLVAADYSQIELRIMAHLSEDPSLLA 723

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAE+FGV  E+V+   RR AK INF +IYG+S F LA QL I R +AA
Sbjct: 724 AFSAGQDIHRATAAEVFGVENEEVTIDQRRSAKAINFGLIYGMSAFGLARQLGINRKQAA 783

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +YI+ YF R+PG+  Y+   ++   + G+VET+FGRR++  EIN+     R   ER AIN
Sbjct: 784 EYIELYFTRYPGVQNYMNNIRHSAAEQGFVETVFGRRLYLPEINASNGMRRQAAERTAIN 843

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI + AMI+VH  LE   L +K+++Q+HDELV EVPE E+    + +   ME
Sbjct: 844 APMQGTAADIIKLAMINVHNWLETSDLTSKIIMQVHDELVLEVPESEMEEVQKGLNDLME 903

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      L VPL V+I V +NW E +
Sbjct: 904 SAA----ELLVPLVVDIGVGDNWDEAH 926


>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
 gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
          Length = 951

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1000 (37%), Positives = 551/1000 (55%), Gaps = 73/1000 (7%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  EN L LVDGSS++YRAFYA P L+    G P  A+ G  NML  L+   +     
Sbjct: 1   MAKIAENPLVLVDGSSYLYRAFYAFPPLTN-SLGEPTGAMYGVLNMLKSLIAQVQ----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV+FD    TFR+EI+  YK++RP +P+ L  Q+  +    +A GIP + ++G EAD
Sbjct: 56  THIAVVFDAKGKTFRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A ++G  V I + DKD+ QLV     L +T+    +D + VI K+GIPPE 
Sbjct: 116 DVIGTLAVQASQQGKNVLISTGDKDMAQLVDDNIMLINTMNNSLLDRDGVIDKYGIPPEL 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
           +V   AL GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E 
Sbjct: 176 IVDYLALMGDSSDNIPGVSGVGEKTALGLLQGIGSMAEIYANLEKVAGLSIRGAKKLGEK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +      A LS  L  ++T+V + I  + L+L   N  +LI +    EF + +N V    
Sbjct: 236 LSSAKADADLSYLLATIKTNVELDITPDQLVLGQNNQDQLIEYFARYEFKRWLNEV---- 291

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                        I+   +   A + EI  D T    Q +S S+  S +           
Sbjct: 292 -------------ISGESSLTKATQQEIKLDKT----QTNSASESKSAV----------- 323

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                     I+  SY  I   + +  W++KL+     +    TD +D   +  + I+ +
Sbjct: 324 -----KKTIKIDRTSYETIDTQEKLNSWLEKLQQADLIAVDTETDALDPMRANLVGISFA 378

Query: 413 TLDQKDDTSFKVE------TIFIDLSVHTSQDS----TGKNTLTKE-ILSYLKKFFENEH 461
             + +                  DL   + Q++      KN L KE  L+ LK   EN  
Sbjct: 379 LTNSEACYIPLAHKQAVKEMTQTDLFTESEQNAEQFELVKNQLNKETCLAQLKPLLENPS 438

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE- 519
             K+G NIKYD  +   + I + G   D ML SYVLDS    H++ ++++++L +   E 
Sbjct: 439 IQKVGQNIKYDLTIFANHHIQLNGVCFDTMLQSYVLDST-GRHNMGALSERYLGHQVIEF 497

Query: 520 --ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPM 576
             I    K  +  DKI+ +Q  E+A E++++ ++L  +L  +L     L+ V+  ++ P+
Sbjct: 498 ESIAGKGKKQVTFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPL 557

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+S+ME  G+ ID   L + S +I++ L +LE+ +Y  +G +FNL+S KQL +ILFTK
Sbjct: 558 VKVLSKMERNGVLIDSQALLKQSEKIARRLTALEQQVYQEAGAEFNLASTKQLQEILFTK 617

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L  P  AKT  G   T    LE +    + + K ++E R L+K+KSTY D LP+ +NK+T
Sbjct: 618 LALPIIAKTPKGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKT 677

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT Y  A T TGRL+S +PNLQNIPIK + G  IR+AFI+    K+I+ADYSQIELR
Sbjct: 678 GRVHTSYHQAVTATGRLSSSDPNLQNIPIKNEEGHCIRQAFIARKGYKIIAADYSQIELR 737

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH+++   L   F    DIHR  AAEIFG+ + +V+ + RR AK INF +IYG+S F 
Sbjct: 738 IMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMSSFG 797

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ QL I R+ A  Y+  YF R+PG+  ++   +   ++ GYVET+FGRR++  EINS  
Sbjct: 798 LSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEINSSN 857

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           +  R   ER AINAP+QG+AADI + AMI++H  ++ + +   M++Q+HDELVFEV E +
Sbjct: 858 AIRRKGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDIQ--MIMQVHDELVFEVKENK 915

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   S +I   ME A     +L VPL V+I V +NW E +
Sbjct: 916 VDEYSALIKSLMENAA----HLSVPLIVDIGVGDNWDEAH 951


>gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
 gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
          Length = 927

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/984 (36%), Positives = 541/984 (54%), Gaps = 73/984 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN + LVDGSS++YRA++A P L+ +  G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPIILVDGSSYLYRAYHAFPPLTNRA-GEPTGAMYGVLNMLKSLLVQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIAPLHDMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLVSP   L +T+    +  E V  K+G+PPE ++   
Sbjct: 121 LALAAARGGRDVLISTGDKDMAQLVSPKITLINTMSNTILGPEEVQLKFGVPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G LE++      +        K     + ++ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLESLYQQLDSVSSLSFRGAKTMAAKLEQHR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDVP+ +P + L +E+     L+   +  EF + ++ +         
Sbjct: 241 EVAFLSYQLATIKTDVPLDLPYDRLTVEEPEAEALMLLFQRYEFKRWLSDLEAGKWLQ-- 298

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                   +     +  F++     ++  +E             
Sbjct: 299 -----------------------RKSAVAPSPPFTAPRPAAAEEPTEA------------ 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ D Y  I     ++ W+  +   G  +F   TD +D   +  I +  +     
Sbjct: 324 -----LSKDGYVIIDTMATLEMWIGAIRHAGVFAFDTETDGLDTLTANLIGLCFAVKPG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D                  +L+ LK   E+    KIG N+K+D+ VL 
Sbjct: 378 EAAYLPVGHDYLDAP---------DQLDRATVLAALKPVMEDPTIGKIGQNLKFDRGVLK 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I + G   D ML SYVLDS    HD+ S+A+++L +T    +EI    ++ +  ++I
Sbjct: 429 RYDIELAGIAFDTMLESYVLDSVAGRHDMDSLAERFLQHTTVSFEEIAGKGRNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V L+L   L P++    +L  V+E ++ P++ V+S++E TG+ ID+
Sbjct: 489 AMEQAASYAAEDADVTLRLHQKLWPRIEQAPELRRVFEEIEMPLVPVLSRIERTGVLIDE 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++K L  LE   + L+ E FNLSS KQL +IL+ K K P   KT  G   T
Sbjct: 549 SILAAHSVELAKRLEELEGEAHQLAEEPFNLSSTKQLQEILYDKQKLPVLKKTPGGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  ++RVHT Y  A T TGR
Sbjct: 609 NEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPQMINPLSKRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ D G++IR+AFI+PP   +++ADYSQIELRI+AH+A+   L   F 
Sbjct: 668 LSSSDPNLQNIPVRNDEGRRIRQAFIAPPDALIVAADYSQIELRIMAHLARDPGLLNAFA 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+++EKV+   RR AK INF +IYG+S F LA QL +PRSEA  Y+
Sbjct: 728 AGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINFGLIYGMSAFGLARQLSVPRSEAQKYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+      GYVET+ GRR++  +I+S     +   ERAAINAP+
Sbjct: 788 NLYFERYPGVLEYMERTRRQASDRGYVETLDGRRLYLLDIHSRNGMRKKGVERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG++ADI +RAMI++   L+      +M++Q+HDELVFEV  + + +A   I   ME   
Sbjct: 848 QGTSADIIKRAMIAIDGWLQQEAPPVRMIMQVHDELVFEVQRDAVESAKARIKALME--- 904

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL+V++ V  NW + +
Sbjct: 905 -GCFKLDVPLQVDVGVGENWDQAH 927


>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
 gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
          Length = 938

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/985 (36%), Positives = 549/985 (55%), Gaps = 64/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE++  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    + L+ +  +   L+++   L F   +  +         
Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                             ++      T  + ++ SS++   +  N            + +
Sbjct: 292 ------------------LDGGTGIVTADEQAKASSVTASNAANN-----AASNAAAIPE 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D   W++KL+     +F   TD++D   +  + ++ +  +  
Sbjct: 329 SPAAQIDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSFAVAEG- 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D           +    + +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 388 EAAYIPVAHDYLDAP---------QQLDREWVITQLKPLLEDESKAKVGQNLKYDASVMA 438

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S++E TG+ ID 
Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDD 558

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  ILF ++K P   KT +G   T
Sbjct: 559 MLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPST 618

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 619 NEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGR 677

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 678 LSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFR 737

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+
Sbjct: 738 EGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYM 797

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI S  +  R   ERAAINAP+
Sbjct: 798 DKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPM 857

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + ++       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 858 QGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLMESA 917

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW++ +
Sbjct: 918 A----ELAVPLVAEAGHGDNWEQAH 938


>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
 gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
          Length = 931

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/985 (36%), Positives = 540/985 (54%), Gaps = 71/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    E      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRQFASER----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +    +  + 
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNEL---LEGGSG 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E V L  +   +   +   E++                                    
Sbjct: 298 TVEAVELAGSAQASSSSSSHAEME------------------------------------ 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +  D+ 
Sbjct: 322 TSAVTIDRSQYETILDEASFNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAI-DEG 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 381 IAAYVPVAHDYLDAPEQLDRD---------WVLEQLKPILEDDAQAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 432 RYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 492 ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 552 MKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 612 NEEVLHELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFR 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 DGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 791 DKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL       +NW + +
Sbjct: 911 A----ELKVPLVAEAGHGDNWDQAH 931


>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
 gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
          Length = 932

 Score =  972 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/985 (35%), Positives = 556/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 6   ENPFILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLIIQYK----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YK+NRP +P+ L  Q+  +    QA G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LALKAASDGRNVLISTGDKDMAQLVTPNITLINTMTNVILGPDEVKEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+LE+I     +I        K     ++E+ 
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGLGSLEDIYQQLDKIATLSFRGAKTLGAKMVEHE 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++TDV +    + L++ + N  +L+      EF + I+ +         
Sbjct: 241 KVAKLSYQLATIKTDVALDKTFDDLVVNEPNLDKLLEMFTRYEFKRWISDL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       +N G   +    +     +++ ++  +Q +  N               
Sbjct: 292 ------------QNGGWLAQRSSRKAPVPYSAEVATPKEQPAADN--------------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ ++Y  I+  + + +WV+ L+   + +F   TD+++   ++ I ++ +    K
Sbjct: 325 --FPVISQENYESILTHESLMRWVEVLKKAPAFAFDTETDSLNNIDARLIGLSFAVEPGK 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D           +     E+L+ LK   E++  LKIG N+K+D+ ++ 
Sbjct: 383 -AAYIPLRHDYLDAP---------EQLPVDEVLTALKPILEDKTILKIGQNLKFDRGIME 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI + G   D ML SYVL+S  S HD+ ++A+K L++     +EI    K  +  ++I
Sbjct: 433 NEGIELNGIYFDTMLESYVLNSVSSRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ L L   L P++     L HVY  ++ P++ V+S+ME  G+ ID 
Sbjct: 493 EVEQATLYAAEDADITLLLHQALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDA 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI++ L  +E+  + L+G++FNLSSPKQL +ILF KL  P   KT  G   T
Sbjct: 553 QVLAMQSQEITQRLAEIEKETFALAGQEFNLSSPKQLQEILFEKLNLPIIKKTPKGAPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE +    + + + ILE R L+K+KSTY D LP  +N +T+RVHT Y  A T TGR
Sbjct: 613 NEEVLEAL-AHSHELPRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+    K+++ADYSQIELRI+AH+++   L   F 
Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLLDAFA 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FG+ +++V+ + RR AK INF +IYG+S F L+ Q+ + R EA  Y+
Sbjct: 732 QGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEAQRYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    Q GYVET+ GRR++  EINS  +  R  +ER AINAP+
Sbjct: 792 DLYFERYPGVLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAINAPM 851

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI+V   +  +      M++Q+HDELVFEV E  +  A+ +I   ME  
Sbjct: 852 QGTAADIIKKAMIAVDNWICHECPDDVHMIMQVHDELVFEVRESYLEKANAMIHKLMES- 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L +PLKV + V NNW E +
Sbjct: 911 ---SMELAIPLKVEVGVGNNWDEAH 932


>gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
          Length = 930

 Score =  972 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/985 (36%), Positives = 537/985 (54%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    E      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRQFASER----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +         
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNELLEGGSGTVE 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E       ++ +    +ET                                       
Sbjct: 301 AVELAGSAQASSSSSHAEMET--------------------------------------- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +  D+ 
Sbjct: 322 -SAVTIDRSQYETILDEASFNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAI-DEG 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 380 IAAYVPVAHDYLDAPEQLDRD---------WVLEQLKPILEDDAQAKVGQNLKYDASVLA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 431 RYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 491 ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDD 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 551 MKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGAPST 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFR 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 730 DGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 790 DKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL       +NW + +
Sbjct: 910 A----ELKVPLVAEAGHGDNWDQAH 930


>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
 gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
          Length = 946

 Score =  972 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/991 (34%), Positives = 543/991 (54%), Gaps = 65/991 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 5   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 60  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPEK+V 
Sbjct: 120 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPEKIVD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L+N++  A  IK     EN+    +   
Sbjct: 180 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKG-VVGENLRNTLDWLP 238

Query: 242 LSRKLVMLRTDVPITIP---LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  ++      + L+    +  RL  F     F   +             
Sbjct: 239 KGRELLTVKTDCDLSPDVPSFDALVDGGEDRARLADFFGRYGFKTWLR------------ 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E   ++   T    +     + +           +     
Sbjct: 287 --------------------EATGESLPDTRSVGAARKAATPVKQYAPEAAAQQQASLFD 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            + P     Y  +     ++ W++ L+          T ++D   ++ + I++S    + 
Sbjct: 327 VETPPAEVKYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGISLSVQPGQ- 385

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+S   +          + +L+ ++ + E+E   K+G ++KYD  V   
Sbjct: 386 ACYIPVAHRGPDVSGLDAP----AQLSREAVLARMRLWLEDETRGKVGQHLKYDAHVFAN 441

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++RG   D ML SYVL S R+ H + ++A++ L     T +E+     + I  D+++
Sbjct: 442 HGIALRGITHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQIGFDEVA 500

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L PK+  + KL +VYER++ P   V+ +ME TG+ +D +
Sbjct: 501 LDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAE 560

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + SAE+ + LL+LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT +G   T 
Sbjct: 561 RLARQSAELGQRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTD 620

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +TGRL
Sbjct: 621 EEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRL 679

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH++    L + F  
Sbjct: 680 ASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFRE 739

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 740 GQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYID 799

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERAAINAP+Q
Sbjct: 800 RYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQ 859

Query: 894 GSAADITRRAMISVHKSLEDH--------KLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           G+AAD+ + +M++V   LE           + +++++Q+HDELV EVP++E+    + + 
Sbjct: 860 GTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELARVRERLP 919

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M    L    L VPL   + V +NW+E +
Sbjct: 920 ELMCGVAL----LSVPLVAEVGVGSNWEEAH 946


>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
 gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
          Length = 944

 Score =  972 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/991 (34%), Positives = 543/991 (54%), Gaps = 65/991 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 3   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 58  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPEK+V 
Sbjct: 118 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPEKIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L+N++  A  IK     EN+    +   
Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKG-VVGENLRNTLDWLP 236

Query: 242 LSRKLVMLRTDVPITIP---LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  ++      + L+    +  RL  F     F   +             
Sbjct: 237 KGRELLTVKTDCDLSPDVPSFDALVDGGEDRARLADFFGRYGFKTWLR------------ 284

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E   ++   T    +     + +           +     
Sbjct: 285 --------------------EATGESLPDTRSVGAARKAATPVKQYAPEAAAQQQASLFD 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            + P     Y  +     ++ W++ L+          T ++D   ++ + I++S    + 
Sbjct: 325 VETPPAEVKYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGISLSVQPGQ- 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+S   +          + +L+ ++ + E+E   K+G ++KYD  V   
Sbjct: 384 ACYIPVAHRGPDVSGLDAP----AQLSREAVLARMRLWLEDETRGKVGQHLKYDAHVFAN 439

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++RG   D ML SYVL S R+ H + ++A++ L     T +E+     + I  D+++
Sbjct: 440 HGIALRGITHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQIGFDEVA 498

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L PK+  + KL +VYER++ P   V+ +ME TG+ +D +
Sbjct: 499 LDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAE 558

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + SAE+ + LL+LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT +G   T 
Sbjct: 559 RLARQSAELGQRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTD 618

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +TGRL
Sbjct: 619 EEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRL 677

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH++    L + F  
Sbjct: 678 ASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFRE 737

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 738 GQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYID 797

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERAAINAP+Q
Sbjct: 798 RYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQ 857

Query: 894 GSAADITRRAMISVHKSLEDH--------KLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           G+AAD+ + +M++V   LE           + +++++Q+HDELV EVP++E+    + + 
Sbjct: 858 GTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELARVRERLP 917

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M    L    L VPL   + V +NW+E +
Sbjct: 918 ELMCGVAL----LSVPLVAEVGVGSNWEEAH 944


>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
 gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
          Length = 931

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/985 (36%), Positives = 541/985 (54%), Gaps = 71/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    E      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRQFASER----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +    +  + 
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNEL---LEGGSG 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            +E V L  +   +   +   E++                                    
Sbjct: 298 TVEAVELAGSAQASSSSSSHAEME------------------------------------ 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +  D+ 
Sbjct: 322 TSAVTIDRSQYETILDEASFNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAI-DEG 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E++   K+G N+KYD  VL 
Sbjct: 381 IAAYVPVAHDYLDAPEQLDRD---------WVLEQLKPILEDDAQAKVGQNLKYDASVLA 431

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI M+G   D ML SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 432 RYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID 
Sbjct: 492 ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDD 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 552 MKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFR 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 731 DGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 791 DKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 850

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 851 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL       +NW + +
Sbjct: 911 A----ELKVPLVAEAGHGDNWDQAH 931


>gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/987 (34%), Positives = 523/987 (52%), Gaps = 72/987 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K+    LVDGSS+++RAF+  P L+    G    AI G  NML  L+    K+   +H 
Sbjct: 4   SKKPPFILVDGSSYLFRAFHGLPPLTNSK-GQDTGAIYGVVNMLKSLI----KQYNPTHM 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVIFD    TFR++IY +YKANRP +P+ L  Q+  +    +A G+P I   G EADD+I
Sbjct: 59  AVIFDAKGKTFRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVESGVEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A ++G    I + DKD+ QLV+    L +T+  + +D+E V  K+GIPPE ++ 
Sbjct: 119 GTLAKHATEKGIDTLISTGDKDMAQLVNEHVTLINTMTNQLMDVEGVNTKFGIPPELVID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILE 235
             AL GD +DNIPG+PG+G K+A  LL   G +++I  N  +I        K     + E
Sbjct: 179 FLALKGDKVDNIPGVPGVGDKSAQALLNGIGGIDDIYKNLDKIADLSFRGSKSMAAKMQE 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           Y E ARLS  L  +  D+ +   +E L+    +  +L       EF +    V+      
Sbjct: 239 YEEQARLSYTLATISIDLDLDYDVEALMPCQADNEQLRDLFAEYEFKRWHAEVSALI--- 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                                +  D +    +    +    E  
Sbjct: 296 -------------------------------------AGGDTSGANANTNEEKSDSAEES 318

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           ++     I+   Y  ++  +    WV KLE     +F   T +++   ++ + ++    +
Sbjct: 319 EQSESVEIDKSKYETVLEEEHFNAWVAKLEKAELIAFDTETTSLNYMDAELVGVSFCIEE 378

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     V   + D     S++          +L  LK   E++  +K+G +IKYDK V
Sbjct: 379 G-EAAYVPVAHDYPDAPAQLSREF---------VLDALKPILESDTVIKVGQHIKYDKNV 428

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L  Y I++ G   D ML SYVL+S    HD+ S+A  +L +     +EI       +  +
Sbjct: 429 LANYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEEIAGKGAKQLTFN 488

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +IS  +   +A E++++ L+L   +  KL    +L ++   ++ P+  V+S+ME  G+ I
Sbjct: 489 QISLEEAGPYAAEDADITLRLHNAIWTKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLI 548

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L+Q S +++  +  LE  +++ +GE FNL S KQL  +LF K+  P   KT  G  
Sbjct: 549 DSQRLRQQSQDLATRIAELESEVHEEAGEPFNLGSTKQLQHVLFEKMSLPIIKKTPKGAP 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             T++D+ Q    + P+ K I+E+R L+K+K+TY D LP  IN RT RVHT Y  A T T
Sbjct: 609 S-TSEDVLQELALEYPLPKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAVTAT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+ + G+++R+AF+     K ++ADYSQIELRI+AH++    L   
Sbjct: 668 GRLSSTDPNLQNIPIRNEEGRRVRQAFVPREGNKFVAADYSQIELRIMAHLSGDKGLLDA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH+  AAE+FGV +++V+ + RR AK INF +IYG+S F L+ QL IPR+EA  
Sbjct: 728 FAHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLSKQLNIPRNEAQK 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+ EY++ T+   ++ GYVET+FGRR++  +I +   + R   ERAAINA
Sbjct: 788 YMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI + AMI V   +         M++Q+HDELVFE+ E+++ T    I   ME
Sbjct: 848 PMQGTAADIIKMAMIKVDDWIRKNASDDVTMMMQVHDELVFEIREDKVETYVSTITALME 907

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      L VPL V   V  NW E +
Sbjct: 908 SAA----TLNVPLVVEAGVGENWDEAH 930


>gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
 gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
          Length = 944

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/991 (34%), Positives = 542/991 (54%), Gaps = 65/991 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 3   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 58  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPEK+V 
Sbjct: 118 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L+N++  A  IK     EN+    +   
Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKG-VVGENLRSTLDWLP 236

Query: 242 LSRKLVMLRTDVPITIP---LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  ++      + L+    +  RL  F     F   +             
Sbjct: 237 KGRELLTVKTDCDLSPDVPSFDALVDGGEDRARLADFFGRYGFKTWLR------------ 284

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E   ++   T    +     + +           +     
Sbjct: 285 --------------------EATGESLPDTRSVGAARKAATPVKQYAPEAAAQQQASLFD 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            + P     Y  +     ++ W+Q L+          T ++D   ++ + I++S    + 
Sbjct: 325 VETPPAEVKYETVTTEAQLESWMQLLDASELVCIDTETTSIDPMLAQLVGISLSVQPGQ- 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+S   +          + +L+ ++ + E+E   K+G ++KYD  V   
Sbjct: 384 ACYIPVAHRGPDVSGLDAP----AQLSREAVLARMRLWLEDETRGKVGQHLKYDAHVFAN 439

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++RG   D ML SYVL S R+ H + ++A++ L     T +E+     + I  D+++
Sbjct: 440 HGIALRGITHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQIGFDEVA 498

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L PK+  + KL +VYER++ P   V+ +ME  G+ +D +
Sbjct: 499 LDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERNGVLVDAE 558

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + SAE+ + LL+LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT +G   T 
Sbjct: 559 RLARQSAELGQRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTD 618

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +TGRL
Sbjct: 619 EEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRL 677

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH++    L + F  
Sbjct: 678 ASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFRE 737

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 738 GQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYID 797

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERAAINAP+Q
Sbjct: 798 RYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQ 857

Query: 894 GSAADITRRAMISVHKSLEDH--------KLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           G+AAD+ + +M++V   LE           + +++++Q+HDELV EVP++E+    + + 
Sbjct: 858 GTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELARVRERLP 917

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M        +L VPL   + V +NW+E +
Sbjct: 918 ELMCGVA----SLSVPLVAEVGVGSNWEEAH 944


>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
 gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
          Length = 932

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/980 (40%), Positives = 592/980 (60%), Gaps = 60/980 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDKYKANREAMPEDLRPQIPLTRTATEAFNIACKEKEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G   TIIS+DKDLMQLV     + D +K + ID + V +K+G+ P+++V +
Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKSIDRDGVFEKFGVYPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L  A  IKQ KRR+ ++++A+  RL
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLERAGEIKQPKRRQTLIDHADQIRL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV L  + P+   LE L + D +  +L+ FL  +                       
Sbjct: 247 SRDLVKLDENTPLDFTLEDLEVRDPDADQLLGFLAEM----------------------- 283

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP---QKLFLERLQKLS 359
                                      +F +LS + +++  ++ P   +          +
Sbjct: 284 ---------------------------EFRTLSKRVAEVLGKEAPTIAEAPVAADAPAAA 316

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P + + Y  + +T  +Q W+ ++   G  +    T  +D   ++ + +++     K  
Sbjct: 317 DVPFDAELYEHVSDTAALQAWIDRIYEFGYVAVDTETTGLDDMVAQLVGVSLCVEPGKAC 376

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               +        +  S D       T+E L  L    E+   LKIG N+KYD  +  + 
Sbjct: 377 YIPLIHKARGSDDLFGSDDLAEGQIPTEEALRLLTPMLEDPSILKIGQNMKYDSKIFAQL 436

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           GI++   +D ML+SY + +G   H + ++++++LS+T    K +L + KS+I  DK+  +
Sbjct: 437 GINVAPIDDTMLLSYAMHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLA 496

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              ++A E++++ L+LW L +P+L    +  VYE L++P++ V++ ME +G+++D+D L 
Sbjct: 497 DAVKYAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVPVLAAMERSGVKVDRDTLS 556

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S   ++ +  LE++IY+L+G KFN+ SPKQLG+ILF ++    G K KTG + T A  
Sbjct: 557 RMSNAFAQKMAGLEDDIYELAGRKFNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADV 616

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGRLAS 
Sbjct: 617 LEDL-ATEHDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLAST 675

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+++ G++IR AF++ P K L++ DYSQIELRILAHIA I  L Q F++ +D
Sbjct: 676 DPNLQNIPIRSEEGRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELKQAFQDGID 735

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH + A+E+FGV +++++  +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF
Sbjct: 736 IHALTASEMFGVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYF 795

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFPGI  Y+  TK F +++G+V+T+FGR+IH  EI S K       +RAAINAPIQG+A
Sbjct: 796 ERFPGIRTYMNDTKAFAKEHGFVQTLFGRKIHTPEI-SAKGPRAGFAQRAAINAPIQGTA 854

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ RRAMI +  +++D  L   MLLQ+HDEL+FEV +           H ME A  P +
Sbjct: 855 ADVIRRAMIRMPDAIKD--LPATMLLQVHDELLFEVEKGAEDDLIAAARHVMENAADPVV 912

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L V L V+  V  +W E +
Sbjct: 913 KLDVKLDVDAGVGASWAEAH 932


>gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
 gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
          Length = 929

 Score =  971 bits (2511), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/994 (35%), Positives = 534/994 (53%), Gaps = 86/994 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+++Y +YKANRP +P+ +  Q+  +  +  A G P + ++G EADD+I 
Sbjct: 57  VVFDAKGGTFRDDMYAEYKANRPSMPDDMRVQIEPLHASVIALGFPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+    +D+E V +K+G+ PE+++  
Sbjct: 117 TLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQE-YGNLENILINASRIK------QKKRRENILE 235
            AL GDS DNIPG+PGIG KTA+ LL    G L+ +      +        K     + E
Sbjct: 177 LALMGDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + E A LS +L  ++ DVP+ + L+ L L + +  +L+     LEF   ++ +       
Sbjct: 237 HKEMAFLSYQLATIKVDVPLDVGLDDLHLGEPDREKLVELYSLLEFKSWLDELQ------ 290

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                    D    E  G                             +E TP  +  + +
Sbjct: 291 --------RDAKRVELSG-----------------------------AEATPAAVPPQAV 313

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           ++          Y  I++ +    W++KL+     +F   T  +DA  ++ + ++ S   
Sbjct: 314 EQAP----LELQYETILDQERFDAWLEKLKGAKLIAFDTETTGIDAQQAQLVGLSFSVKA 369

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++       +DS         +L  LK   E+   LK+G + K+D  +
Sbjct: 370 G-EAAYVPLTHSYMGAPAQLDRDS---------VLLALKPLLEDPKLLKVGQHAKFDMNI 419

Query: 476 LHRY--------GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKS 523
           L           GI++RG   D ML SYVL+S  + HD+ S+AQK+L ++    ++I   
Sbjct: 420 LANCAIGGDQANGITVRGVAFDTMLESYVLNSTATRHDMDSLAQKYLDHSTVSFQDIAGK 479

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQ 582
               +  D+I   Q   +A E+++V L+L  +L  KL  +  L  V   ++ P++ V+++
Sbjct: 480 GAKQLTFDQIPLEQAGPYAAEDADVTLRLHQVLFDKLSAIPSLASVLTDIEMPLVPVLAR 539

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D  LL   S E+   +++LE   ++++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 540 IERQGALVDDKLLGVQSIELGDKMVALEREAFEIAGEEFNLGSPKQLGSILYDKLGLPVL 599

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  GQ  T  + L ++   D P+ + ++++R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 600 KKTAKGQPSTAEEVLAKLAEDDYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 659

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A   TGRL+S +PNLQNIP++T  G++IR+AFI+PP  KL++ADYSQIELRI+AH++
Sbjct: 660 YHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPPGYKLLAADYSQIELRIMAHLS 719

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F N+LD+H   AAE+F V ++ V+   RR AK INF +IYG+   +L   + 
Sbjct: 720 RDEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINFGLIYGMGAQKLGKDIG 779

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +   +A  YI  YF R+PG+ EY+++T+      GYVETIFGRR++  EINS K   R  
Sbjct: 780 VDTKQAKAYIDTYFARYPGVREYMDRTRAQAADQGYVETIFGRRLYLPEINSNKPQERAG 839

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI ++AM++V   L    L  +++LQ+HDELV EV E+ +    +
Sbjct: 840 AERTAINAPMQGTAADIIKKAMVAVDNWLASSGLDARVILQVHDELVLEVREDLVDQVRE 899

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            I   M  A      L VPL V + V NNW E +
Sbjct: 900 EIRGHMSGAA----TLDVPLLVEVGVGNNWDEAH 929


>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
 gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
          Length = 1060

 Score =  971 bits (2511), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1035 (40%), Positives = 617/1035 (59%), Gaps = 64/1035 (6%)

Query: 5    NHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            + + LVDGSSFI+RA++ +        SR  DGLP  A+  FC  + + LQ+    ++ +
Sbjct: 27   DQVILVDGSSFIFRAYFQSINQDQKYNSRPSDGLPTGAVRLFCTKIAQFLQDGAAGTMPT 86

Query: 60   HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E++ +EADD
Sbjct: 87   HLGIVFDKSEGSFRKEMFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELERYEADD 146

Query: 120  IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHVI 169
            +IATYT  AE  G  V I+S+DKDLMQLV P    YD             E  +D+E ++
Sbjct: 147  LIATYTRQAEARGAGVIIVSSDKDLMQLVGPQVRFYDFESGAKGKPGYRPERNLDVEAIV 206

Query: 170  KKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
             KW G+ P ++    AL GD+ DN+PG+PGIG KTAA L++E+G+LE +L  A  IKQ K
Sbjct: 207  AKWEGLQPNQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEFGSLEALLERAGEIKQPK 266

Query: 229  RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            RRE +L   + A+LSR+LV L  DVP+ +PL+ L +   N  +L+ FLKA+EF  L  R+
Sbjct: 267  RRETLLANVDQAKLSRRLVALMEDVPVPVPLDDLGVPQPNPEKLVGFLKAMEFNTLTRRI 326

Query: 289  ATTYDCDAANIEPV------VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
            A     D   ++P                 G +       D+     + ++   +     
Sbjct: 327  AQMLHVDPEAVKPDPRLLPGARPHGYGNAAGGSDAVPFFGDSVPPDPETAAAGAERPPGA 386

Query: 343  S--------------------------EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376
            +                          E TP  +   R  + S  P +  +Y  + + + 
Sbjct: 387  APPEGGEIDPFADLDLPDAPAKPRAPVEATPGNVVAARAAE-SVAPFDTAAYETVSSLEQ 445

Query: 377  IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT-------SFKVETIFI 429
            +  W+ + E  G  +    TD++DA  +  + ++++    +          + KV+    
Sbjct: 446  LDAWIAEAEEAGVIAVDTETDSLDAHRAGLVGVSLAVATGRACYIPLAHVQAAKVQADAT 505

Query: 430  DLSVHTSQ-----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
            DL    +      +        KE ++ LK   EN   LK+G N+KYD +VL RYGI + 
Sbjct: 506  DLFGEGAAPSDVVEPVPGQIPLKEAVARLKPLLENPGVLKVGQNLKYDWVVLARYGIEVA 565

Query: 485  GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEH 541
             F+D ML+SYVLD+G+  H +  +A++ L +      ++  + ++ +  D+++  +   +
Sbjct: 566  PFDDTMLISYVLDAGKGGHGMDELARRHLGHQPITFSDVAGTGRNKVTFDRVAIDKATAY 625

Query: 542  AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            A E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI++D+++L ++S +
Sbjct: 626  AAEDADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQRGIRVDREMLSRLSGD 685

Query: 602  ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
             S+ L+ LEE I + +GEKF++ SPKQ+GDILF K+  P   KT +GQW T A  LE++ 
Sbjct: 686  FSQILVRLEEEIQEDAGEKFSVGSPKQIGDILFGKMGLPGAKKTPSGQWATPATLLEELA 745

Query: 662  CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               + + K ILEWRQLSK+KSTY D+L  H ++ T RVHT +SLA+T TGRL+S EPNLQ
Sbjct: 746  QAGHELPKKILEWRQLSKLKSTYTDALQAHADRETARVHTSFSLAATTTGRLSSSEPNLQ 805

Query: 722  NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
            NIPI+T+ G++IRRAF++ P  +LISADYSQIELR+LAH+A I  L + FE+ +DIH   
Sbjct: 806  NIPIRTEEGRRIRRAFVAAPGNRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAAT 865

Query: 782  AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            A+ +FGV +++++P +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF +FPG
Sbjct: 866  ASAMFGVPLKEMTPDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFEQFPG 925

Query: 842  IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            I +YIE TK   R  GYV T+FGR  HY +I S   S R   ER AINAPIQGSAADI R
Sbjct: 926  IRDYIETTKKSCRDKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGSAADIIR 985

Query: 902  RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            RAM  +  +L   KL  +MLLQ+HDELVFEV E+E+     II   ME+A  P + L+VP
Sbjct: 986  RAMTRMEAALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVMEEAPAPALTLKVP 1045

Query: 962  LKVNIKVSNNWQEEN 976
            L V    + NWQE +
Sbjct: 1046 LVVEANAAGNWQEAH 1060


>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 933

 Score =  971 bits (2510), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/983 (36%), Positives = 528/983 (53%), Gaps = 67/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + + G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K G  V I + DKD+ QLV     L +T+    +D   VI+K+GIPPE ++   A
Sbjct: 122 ASQASKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  + +L    
Sbjct: 182 LMGDSSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGKKLLAEKA 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV +      L + D +   LI++    EF + +  V         +
Sbjct: 242 MADLSYALATIKTDVMLEFSPHELAIGDSDNDALIAYFGRYEFKRWLGEVMNGAGTVTQS 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E  V  IN  +    A   E   +  +K                               
Sbjct: 302 AEQPV-KINHYQATPAAKIDESAVENAVK------------------------------- 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
             + I+   Y  I+   D+ +W++KL      +    TD +D   +  + ++ +  + + 
Sbjct: 330 --FHIDRSRYENILTEADLARWLEKLNAAKLIAVDTETDGLDYMSANLVGVSFALENGEA 387

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                       L +H       K       LS LK   EN +  KIG N+K+D  +  R
Sbjct: 388 AY----------LPLHLDYLGAPKTLEKNTALSALKPILENPNIGKIGQNLKFDMTIFAR 437

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            GI ++G   D ML+SY LDS    H++  +A+++L +     ++I    K+ +  ++I 
Sbjct: 438 NGIDLQGIEFDTMLLSYTLDST-GRHNMDDLAKRYLGHQTISFEDIAGKGKNQLTFNQIP 496

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L  +L  KL     L+ +Y+ ++ P++ V+S+ME  G+ ID D
Sbjct: 497 LEQAGEYAAEDADVTMKLQQVLWQKLQPQPGLVELYQSIELPLLGVLSRMERYGVLIDSD 556

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI++ L +LE   + L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 557 ALFLQSNEITERLTALEMQAHTLAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGVPSTN 616

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 617 EEVLEELAYS-HELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRL 675

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+    K+I+ADYSQIELRI+AH++    L   F  
Sbjct: 676 SSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGLINAFAQ 735

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFG+ +E+V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+ 
Sbjct: 736 GKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGISRADAQRYMD 795

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+P +  +I   +   +  GYVET+FGRR++  EINS  +  R   ER AINAP+Q
Sbjct: 796 LYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAERVAINAPMQ 855

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD  +RAMI +   +        M++Q+HDELVFEV  E+I   S +I   ME A  
Sbjct: 856 GTAADTIKRAMIKLD-GITRDDPDIHMIMQVHDELVFEVRSEKIAFFSDLIKQHMEAAA- 913

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL V++ V  NW E +
Sbjct: 914 ---ELVVPLIVDVGVGENWDEAH 933


>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
 gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
          Length = 938

 Score =  971 bits (2510), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/982 (35%), Positives = 529/982 (53%), Gaps = 55/982 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L LVDGSS++YRA++A P L R  +GLP  AI G  NML KL    R +  A + A
Sbjct: 4   SPKTLLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAEYSA 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++YP YK +RP +PE L  Q+  +  A +A G P + + G EADD+I 
Sbjct: 59  CVFDAKGKTFRDDMYPAYKEHRPSMPEDLARQIEPIHEAVRAMGWPIVVVDGVEADDVIG 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  A ++G    + + DKDL QLV+    L +T+  E +D   V+ K+G+PPE+++  
Sbjct: 119 TLSRQATEQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPPGVVAKFGVPPERIIDY 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+P +G KTA   L E+G+L+ ++  A  IK     EN+    +   +
Sbjct: 179 LSLIGDAVDNVPGVPKVGPKTAVKWLAEHGSLDGVIAAAPGIKG-VVGENLRNTLDWLPM 237

Query: 243 SRKLVMLRTDVPITIPLEHLIL---EDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           +R+LV ++TD  ++  +           +  +L++F     F   +         DA   
Sbjct: 238 ARQLVTVKTDCDLSAAVADFHALRETGEDKDKLVAFFSRYGFKTWLREATGESLPDARAQ 297

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                     +                                    P            
Sbjct: 298 ARARAAAAPAQGGLF------------------------------DVPATAGAAEAPAAD 327

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q       Y  +     ++ W++++E     +    T ++D   ++ + I++S       
Sbjct: 328 QAAPTEIRYDTVSTEAQLEDWMRRIEAAPLVAIDTETTSLDPMQAQLVGISLSVEPGV-A 386

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V     D++              + +L  ++ + E+    K+G N+KYD  V   +
Sbjct: 387 CYIPVAHRGPDVAGLPDHG----QLSREFVLGRMRAWLEDASRPKLGQNLKYDVHVFANH 442

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISD 535
           G+ +RG   D ML SYVL S R+ H + S+A++ LS    T +E+     S I  D+I  
Sbjct: 443 GVKLRGVAHDTMLQSYVLASHRN-HGMDSLAERLLSLKTITYEEVCGKGASQIGFDQIDL 501

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           ++  E+A E+++V L+L   + P++     L  VYE ++ P+  V+ ++E  G+ ID + 
Sbjct: 502 ARATEYAAEDADVTLRLHRKMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAER 561

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   SAE+ + +L+LE+  Y+ +G+ FNL SPKQ+G+ILF+++K P   KT +G   T  
Sbjct: 562 LAAQSAELGQRMLALEQAAYEAAGQPFNLGSPKQIGEILFSQMKLPVVKKTASGAPSTDE 621

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +TGRLA
Sbjct: 622 EVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTSYGQATAVTGRLA 680

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP++T+ G++IR AFI+ P   ++SADYSQIELRI+AHI+    L + F N 
Sbjct: 681 STEPNLQNIPVRTEEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAFANG 740

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  A EIFGV  E VS + RR+AK INF +IYG+S F LA  L I R  A  YI R
Sbjct: 741 EDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIEREAAKHYIDR 800

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y+E+T+   R+ GYVET+FGRR+   +IN      R   ERAAINAP+QG
Sbjct: 801 YFMRYPGVAHYMEETRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAPMQG 860

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + +MI+V   LE   L T+ ++Q+HDELV EVPE E+      +   M      
Sbjct: 861 TAADLIKLSMIAVQGWLERDGLQTRQIMQVHDELVLEVPEHELELVKVRLPELMCSVA-- 918

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              LRVPL   +    NW+E +
Sbjct: 919 --QLRVPLVAEVGSGANWEEAH 938


>gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
          Length = 916

 Score =  971 bits (2509), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/965 (36%), Positives = 530/965 (54%), Gaps = 72/965 (7%)

Query: 23  TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKA 82
            P L+    G P  A+ G  NML  L+   +     +H AV+FD    TFR+E++  YK+
Sbjct: 13  FPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAVVFDAKGKTFRDELFEHYKS 67

Query: 83  NRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDK 142
           +RP +P+ L  Q+  +    +A G+P + + G EADD+I T    AEK G  V I + DK
Sbjct: 68  HRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDK 127

Query: 143 DLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
           D+ QLV+P   L +T+    +  E V+ K+G+PPE ++   AL GDS DNIPG+PG+G K
Sbjct: 128 DMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEK 187

Query: 203 TAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETARLSRKLVMLRTDVPIT 256
           TA  LLQ  G L+ +     +I        K     + +  E A LS +L  ++TDV + 
Sbjct: 188 TAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELE 247

Query: 257 IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAI 316
           +  E L ++      L+   K  EF +    V       A   +P               
Sbjct: 248 LTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAKGAKPAAK------------ 295

Query: 317 ETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376
                        Q +S++D+  ++ +                   I+ D+Y  I++ + 
Sbjct: 296 ------------PQETSVADEAPEVTA-----------------TVISYDNYVTILDEET 326

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
           ++ W+ KLE     +F   TD++D   +  + ++ +           V   ++D      
Sbjct: 327 LKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV-AAYIPVAHDYLDAP---- 381

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYV 495
                     +  L  LK   E+E  LK+G N+KYD+ +L  YGI +RG   D ML SY+
Sbjct: 382 -----DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYI 436

Query: 496 LDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           L+S    HD+ S+A++WL +     +EI    K+ +  ++I+  +   +A E+++V LQL
Sbjct: 437 LNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 496

Query: 553 WLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
            L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L   S E++  L  LE+
Sbjct: 497 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 556

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
             ++++GE+FNLSS KQL  ILF K       KT  G   T+ + LE++   D P+ K I
Sbjct: 557 KAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELAL-DYPLPKVI 615

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           LE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +PNLQNIP++ + G+
Sbjct: 616 LEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGR 675

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           +IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ +E
Sbjct: 676 RIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLE 735

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+ 
Sbjct: 736 TVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRA 795

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
             ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+AADI +RAMI+V   L
Sbjct: 796 QAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWL 855

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           +  +   +M++Q+HDELVFEV  +++   ++ I   ME        L VPL V +    N
Sbjct: 856 QAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLMENCT----RLDVPLLVEVGSGEN 911

Query: 972 WQEEN 976
           W + +
Sbjct: 912 WDQAH 916


>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
 gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
          Length = 960

 Score =  970 bits (2508), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/991 (34%), Positives = 541/991 (54%), Gaps = 65/991 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 19  ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 73

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 74  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 133

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPEK+V 
Sbjct: 134 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVD 193

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L+N++  A  IK     EN+    +   
Sbjct: 194 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKG-VVGENLRNTLDWLP 252

Query: 242 LSRKLVMLRTDVPITIP---LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  ++      + L+    +  RL  F     F   +             
Sbjct: 253 KGRELLTVKTDCDLSPDVSSFDALVDGGEDRARLADFFGRYGFKTWLR------------ 300

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E   ++   T    +     + +           +     
Sbjct: 301 --------------------EATGESLPDTRSVGAARKAATPVKQYAPEAAAQQQASLFD 340

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            + P     Y  +     ++ W++ L+          T ++D   ++ + I++S    + 
Sbjct: 341 VETPPAEVQYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGISLSVQPGR- 399

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+S   +          + +L+ ++ + E+E   K+G ++KYD  V   
Sbjct: 400 ACYIPVAHRGPDVSGLDA----AAQLSREAVLARMRLWLEDEIRSKVGQHLKYDAHVFAN 455

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++RG   D ML SYVL S R+ H + ++A++ L     T +E+     + I  D+++
Sbjct: 456 HGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQIGFDEVA 514

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L PK+   +KL +VYE+++ P   V+ +ME  G+ +D +
Sbjct: 515 LDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAE 574

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + SAE+   LL+LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT +G   T 
Sbjct: 575 RLARQSAELGHRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTD 634

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +TGRL
Sbjct: 635 EEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRL 693

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH++    L + F  
Sbjct: 694 ASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFRE 753

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 754 GQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYID 813

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERAAINAP+Q
Sbjct: 814 RYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQ 873

Query: 894 GSAADITRRAMISVHKSLEDH--------KLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           G+AAD+ + +M++V   LE           + +++++Q+HDELV EVP++E+    + + 
Sbjct: 874 GTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELARVRERLP 933

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M        +L VPL   + V +NW+E +
Sbjct: 934 ELMCGVA----SLSVPLVAEVGVGSNWEEAH 960


>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
 gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
          Length = 949

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/985 (35%), Positives = 555/985 (56%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 23  ENPFILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLIIQYK----PSHVAV 77

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YK+NRP +P+ L  Q+  +    QA G+P + I G EADD+I T
Sbjct: 78  VFDAKGKTFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGT 137

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 138 LALKAASDGRNVLISTGDKDMAQLVTPNITLINTMTNVILGPDEVKEKYGVPPELIIDFL 197

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+LE+I     +I        K     ++E+ 
Sbjct: 198 ALMGDSSDNIPGVPGVGEKTALGLLQGLGSLEDIYQQLDKIATLSFRGAKTLGAKMVEHE 257

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS +L  ++TDV +    + L++ + N  +L+      EF + I+ +         
Sbjct: 258 KVAKLSYQLATIKTDVALDKTFDDLVVNEPNLDKLLEMFTRYEFKRWISDL--------- 308

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       +N G   +    +     +++ ++  +Q +  N               
Sbjct: 309 ------------QNGGWLAQRSSRKAPVPYSAEVATPKEQPAADN--------------- 341

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ ++Y  I+  + + +WV+ L+   + +F   TD+++   ++ I ++ +    K
Sbjct: 342 --FPVISQENYESILTHESLMRWVEVLKKAPAFAFDTETDSLNNIDARLIGLSFAVEPGK 399

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D           +     E+L+ LK   E++  LKIG N+K+D+ ++ 
Sbjct: 400 -AAYIPLRHDYLDAP---------EQLPVDEVLTALKPILEDKTILKIGQNLKFDRGIME 449

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI + G   D ML SYVL+S  S HD+ ++A+K L++     +EI    K  +  ++I
Sbjct: 450 NEGIELNGIYFDTMLESYVLNSVSSRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLTFNQI 509

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ L L   L P++     L HVY  ++ P++ V+S+ME  G+ ID 
Sbjct: 510 EVEQATLYAAEDADITLLLHQALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDA 569

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI++ L  +E+  + L+G++FNLSSPKQL +ILF KL  P   KT  G   T
Sbjct: 570 QVLAMQSQEITQRLAEIEKETFALAGQEFNLSSPKQLQEILFEKLNLPIIKKTPKGAPST 629

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE +    + + + ILE R L+K+KSTY D LP  +N +T+RVHT Y  A T TGR
Sbjct: 630 NEEVLEAL-AHSHELPRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGR 688

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI     K+++ADYSQIELRI+AH+++   L   F 
Sbjct: 689 LSSRDPNLQNIPVRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLLDAFA 748

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FG+ +++V+ + RR AK INF +IYG+S F L+ Q+ + R EA  Y+
Sbjct: 749 QGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEAQRYM 808

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    Q GYVET+ GRR++  EINS  +  R  +ER AINAP+
Sbjct: 809 DLYFERYPGVLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAINAPM 868

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI+V   +  +      M++Q+HDELVFEV E  +  A+ +I   ME  
Sbjct: 869 QGTAADIIKKAMIAVDNWICHECPDDVHMIMQVHDELVFEVRESYLEKANAMIHKLMES- 927

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L +PLKV + V NNW E +
Sbjct: 928 ---SMELAIPLKVEVGVGNNWDEAH 949


>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 937

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/983 (35%), Positives = 535/983 (54%), Gaps = 77/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVD SS++YRA++A P L+  H   P  A+ G  NML  LL         SH AV+
Sbjct: 7   NPLILVDASSYLYRAYHALPPLTNSHK-EPTGAMYGVLNMLRSLLSQYH----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y  YK++RP +P+ L  Q+  +    +A G+P + + GFEADD+I T 
Sbjct: 62  FDAKGKTFRDELYVQYKSHRPPMPDDLASQIEPLYRMVRAMGLPLLVVAGFEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AEK G +V I + DKD+ QLV+    L +T+    +  + V  K+G+PPE M+   A
Sbjct: 122 AQQAEKAGRSVVISTGDKDMAQLVTTNITLINTMNNTVLGSQEVRDKYGVPPELMIDFLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+PG+G KTA  L+Q  G L+ +  N  +I        K     + ++ E
Sbjct: 182 LMGDSSDNIPGVPGVGEKTAQALIQGLGGLDCLFSNLEKIATLTFRGAKTFAAKLQQHKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++TDV + I  + L +   +  +L       EF + +  + +        
Sbjct: 242 LAYLSYQLATIKTDVKLDIAHDKLNIPPPDIDQLHQLFSRYEFKRWLAELNSPDWPMG-- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       K    +S+ + T+                   
Sbjct: 300 ----------------------------KKRPATSIDEPTA------------------- 312

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                + D+Y  I++   +  W+++L      +F   TD +D  ++  I ++ +     +
Sbjct: 313 PSARFSQDNYQIILDEDSLSHWIEQLNQADLFAFDTETDGLDIINANLIGLSFAITPG-E 371

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   + D  +               +L  LK   EN    K+G N+K+DK +L R
Sbjct: 372 AAYLPLAHDYSDAPI---------QLDRTLVLDKLKPLLENPQKQKVGQNLKFDKSILAR 422

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            GI ++G   D ML SY+L++    HD+ S++Q++L +     +EI    KS +  ++I+
Sbjct: 423 CGIVLQGIAFDTMLESYILNTVAGRHDMDSLSQRYLQHKTITFEEIAGKGKSQLTFNQIA 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E++++ L+L   L P+L   K L  ++  ++ P++ V+S++E TG+ ID+ 
Sbjct: 483 LEQAAPYAAEDADITLRLHHCLWPQLQQSKALSWIFTHIEMPLLSVLSRIESTGVLIDRA 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L Q S E++  L  LEE  + L+ E FNL+SPKQL  IL+ K + P   KT  G   T 
Sbjct: 543 VLAQHSQELTTRLTELEEQAHLLAEEPFNLASPKQLQTILYEKQQLPVLKKTPKGAPSTD 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L ++   D P+ K +LE+R L+K+K+TY D LP+ IN  + RVHT Y  A T+TGRL
Sbjct: 603 EEVLAELAL-DYPLAKVLLEYRGLAKLKTTYTDKLPSMINPTSGRVHTSYHQAVTVTGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIPI+++ G++IR+AFI+PP  ++I+ADYSQIELRI+AH+++ + L + F  
Sbjct: 662 SSREPNLQNIPIRSEEGRRIRQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIKAFTA 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+F V++E  + + RR AK INF +IYG+S F LA QL I R EA  YI 
Sbjct: 722 DKDIHRATAAEVFNVSVETATDEQRRSAKAINFGLIYGMSAFGLARQLGIARVEAQHYID 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+  Y+E  +      GYV T+ GRR++  +IN+  +  R   ER AINAP+Q
Sbjct: 782 LYFARYPGVANYMEAIRKQAATQGYVTTLSGRRLYLPDINASSAMRRKAAEREAINAPMQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI +   L+   L  +M++Q+HDELVFEV E  +  A + I H ME+   
Sbjct: 842 GTAADIIKSAMIEIDAWLQHQPL-VRMIMQVHDELVFEVHESVVQGAVEKIRHLMEQTTE 900

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
             + L VPL VNI V  NW + +
Sbjct: 901 KSMPLTVPLCVNIGVGANWDQAH 923


>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
 gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Cupriavidus metallidurans CH34]
          Length = 934

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/982 (36%), Positives = 537/982 (54%), Gaps = 59/982 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L LVDGSS++YRA++A P L R  +GLP  AI G  NML KL    R +  A + A
Sbjct: 4   SPKTLLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAQYIA 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++YP YK +RP +PE L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 59  CVFDAKGKTFRDDMYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIG 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A ++G    + + DKDL QLV+ T  L +T+  E +D   V+ K+G+PPE++V  
Sbjct: 119 TLALQASQQGVNTVVSTGDKDLAQLVNDTVTLVNTMSGEVLDPPGVVAKFGVPPERIVDY 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+P +G KTA   L EYG L++I+ NA +IK     EN+    E    
Sbjct: 179 LSLIGDAVDNVPGVPKVGPKTAVKWLTEYGTLDDIMGNAEKIKG-VVGENLRNTLEWLPR 237

Query: 243 SRKLVMLRTDVPITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           +R+LV ++TD  ++      + L     +  +LI+F +   F   + R AT      A  
Sbjct: 238 ARELVTVKTDCDLSGAVADFQALHDLGEDKEKLIAFFQRYGFKSWL-REATGESLPNARA 296

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
               +        G+                                      +      
Sbjct: 297 AARAVPKAAPAQGGLFD---------------------------------APAQADAPAE 323

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P     Y  +     + +W++K+      +    T ++D   ++ + I++S       
Sbjct: 324 DVPPAEIRYETVTTEAALDEWLRKIADAPIVAIDTETTSLDPMLAQLVGISLSVEPG-AA 382

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V     D++   +          + +L  ++ + E+    K+G ++KYD  V   +
Sbjct: 383 AYIPVAHRGPDVAGLENHG----QLSREYVLERMRGWLEDPARPKLGQHLKYDSHVFANH 438

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISD 535
           G+++RG   D ML SYVL S R+ H + S+A++ LS    T +E+     + I  D+I  
Sbjct: 439 GVALRGIAHDTMLESYVLASYRN-HGMDSLAERLLSLKTITYEEVCGKGANQIGFDQIDL 497

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            +  E+A E+++V L+L   ++P+L   E L +VYE+++ P+  V+ ++E  G+ ID D 
Sbjct: 498 PRATEYAAEDADVTLRLHRKMQPQLEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADR 557

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   SAE+   ++ LE   +D +G+ FNL SPKQ+G+ILF ++K P   KT +G   T  
Sbjct: 558 LAAQSAELGLRMMDLERAAHDAAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDE 617

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+++   D P+ K +L++R LSK+KSTY D LP  +N  T RVHT Y  A+ +TGRLA
Sbjct: 618 EVLQKL-ADDYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVTGRLA 676

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T+ G++IR AFI+ P   ++SADYSQIELRI+AHI+    L + F N 
Sbjct: 677 STDPNLQNIPVRTEEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENLLRAFANG 736

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  A EIFGV  E VS + RR+AK INF +IYG+S F LA+ L I R  A  YI R
Sbjct: 737 EDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKHYIDR 796

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y+E+T+   R+ GYVET+FGRR+   +IN      R   ERAAINAP+QG
Sbjct: 797 YFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQG 856

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + +MI+V   LE  +L T+ ++Q+HDELV EVP+ E+      +   M      
Sbjct: 857 TAADLIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAELELVRVKLPELMCAVA-- 914

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL   +    NW+E +
Sbjct: 915 --TLNVPLVAEVGSGANWEEAH 934


>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
 gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
          Length = 932

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/985 (35%), Positives = 534/985 (54%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NA+ G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVINMVRAMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+YP+YKA RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELYPEYKAQRPPMPDDLRCQIEPLHNVIRAMGLPLLSIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             + A + G  V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   
Sbjct: 121 LAHQASQAGIPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N  +I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTALYDNLDKIADLGFRGSKTMAKKLEDNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS +L  ++ DV +    E L+    +   LI     L F   +N +         
Sbjct: 241 ANAELSYELATIKLDVALDCTPETLLKATPDRDALIELYGQLSFKSWLNELLEGGTGVVE 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E     +  +     A   +                                      
Sbjct: 301 AAEKSAASVAVSGAPQAAPMADS------------------------------------- 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+   Y  IV+     +W+ KL +    +F   TD++D   +  + ++ +  +  
Sbjct: 324 -AAVKIDRSQYETIVDEAAFNRWLDKLRSAEVFAFDTETDSLDYMVANLVGVSFAVAEG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +L+ LK   E+    K+G N+KYD  +L 
Sbjct: 382 EAAYVPVAHDYLDAPQQLDRD---------WVLAQLKPILEDAQQAKVGQNLKYDASILA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I+M+G   D ML SYV +S    HD+ S+A +++ ++    +++    K+ +  ++I
Sbjct: 433 RYDINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQHSCISFEQVAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L P L  + KLL VY  ++ P++ V+S++E TG+ I+ 
Sbjct: 493 DLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYRDIEMPLVPVLSRIERTGVLIND 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI++ L  LE+  +D++G++FNLSSPKQL  I F ++K P   KT +G   T
Sbjct: 553 MLLGAQSQEIAQRLDELEKKAFDIAGQEFNLSSPKQLQTIFFDQMKLPVIKKTPSGTPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+   ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLQELAL-DYPLPAVILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L + F+
Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQ 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G++I++V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 QGKDIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + GYVET+FGRR+H  EI S     R   ERAAINAP+
Sbjct: 792 DTYFERYPGVMQYMEDTRSTAAEQGYVETLFGRRLHLPEITSRNGMRRKAAERAAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V   +E       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 852 QGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESALSEIESKVQKLMESA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL       +NW E +
Sbjct: 912 AA----LKVPLVAEAGHGDNWDEAH 932


>gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2]
 gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2]
          Length = 938

 Score =  968 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/981 (39%), Positives = 580/981 (59%), Gaps = 56/981 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A++GF NML + ++ +     A+H A
Sbjct: 7   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFVNMLQRYVEGNNGADAATHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E++GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDQYKANRDAMPEDLRPQIPLTRTATKAFNIACEEMEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T ++ A   G  VTI+S+DKDLMQLV     + D +K ++ID + V++K+G+ P ++V +
Sbjct: 127 TLSHQARDAGGRVTIVSSDKDLMQLVGDGVEMLDPMKNKRIDSDGVVEKFGVGPNRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L  A  IKQ KRRE ++E  E   L
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLESLLDRAEEIKQPKRRETLIENREQIEL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+KLV L  ++ +   L+ L ++D +   L+ FL  +EF  +  R+A             
Sbjct: 247 SKKLVQLDCEMTLAFGLDDLEVKDPDPEVLMGFLTEMEFRTVTKRIA------------- 293

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                            D+                 +       
Sbjct: 294 ---------------------------------DKLGLEAPVVEAAAPAATEVATPEAVA 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + D+Y  + +   +Q W+ ++   G  +    T  ++   ++ + I++     +     
Sbjct: 321 FDPDAYECVRDAAALQVWIDRIRARGYVAVDTETTGLNEMIAELVGISLCVEAGQACYIP 380

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     +  S +         E L+ LK   ++   +KIG N+KYD  +  R  I 
Sbjct: 381 LTHKSAASDDLFGSDEMAEGQMDFDECLAMLKPVLQDPAVIKIGQNMKYDAKIFARLDID 440

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY +++G+ +H + ++++++L +T    K +L S KS+I  D++      
Sbjct: 441 VAPIDDTMLMSYAMNAGKHNHGMDTLSERYLGHTPIPIKPLLGSGKSAITFDRVPVDDAV 500

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A E++++ L+LW   +P+L + ++  VYE +++P++ V++QME  GI++D+D L ++S
Sbjct: 501 KYAAEDADITLRLWQQFKPQLHMNRVTTVYETMERPLVPVLAQMERHGIKVDRDTLSRMS 560

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQW--KTTAQ 655
              ++ +  LE+ I +++G  FN+ SPKQLG+ILF ++    P G K  TG+    +T  
Sbjct: 561 NAFAQKMAGLEDEIQEMAGRPFNVGSPKQLGEILFDEMGLEMPDGKKPSTGKTGAYSTGA 620

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +     + + + IL+WRQLSK+KSTY D+L  HIN  T RVHT YS+A   TGRLAS
Sbjct: 621 DVLEDLATLHDMPRRILDWRQLSKLKSTYTDALQEHINAETGRVHTSYSIAGANTGRLAS 680

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++++ G++IR AF++   K ++S DYSQIELRILAHIA I  L Q F + +
Sbjct: 681 TDPNLQNIPVRSEEGRRIREAFVAEDGKVIVSLDYSQIELRILAHIAGIDALKQAFLDGI 740

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH M A+E+F V +++++P +RR AK INF +IYGIS F LA  LRIPR EA  +I RY
Sbjct: 741 DIHAMTASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDRY 800

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPGI +Y++ T  F ++N YV+T+FGR+I+  EIN+ K       +RAAINAPIQG+
Sbjct: 801 FERFPGIRKYMDDTVAFAKENSYVQTLFGRKINTPEINA-KGPHAGFAKRAAINAPIQGT 859

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ RRAMI +  ++    L  KMLLQ+HDEL+FEV E  +          ME A  P 
Sbjct: 860 AADVIRRAMIRMPDAI--AGLPAKMLLQVHDELIFEVEEGAVDDLITAARDVMENASDPA 917

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           + L V L V+     NW E +
Sbjct: 918 VKLDVKLAVDAGQGANWAEAH 938


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score =  968 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/985 (36%), Positives = 537/985 (54%), Gaps = 73/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   +     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLMQYQ----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFENYKSHRPPMPDDLRAQIAPLHEMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK+G AV I + DKD+ QLV+P   L +T+    +  E V +K+G+PP  ++   
Sbjct: 121 LALEAEKQGRAVLISTGDKDMAQLVTPGITLINTMTNTVLGPEEVEQKYGVPPSLIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           A+ GDS DNIPG+PG+G KT   LLQ  G +++I  N  ++        K     + +  
Sbjct: 181 AMMGDSSDNIPGVPGVGEKTTQALLQGLGGMQSIYDNLDKVADLSFRGAKTMAAKLEQNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++TDV + +  E L + + +   L +     EF + +  +         
Sbjct: 241 DVAFLSYQLATIKTDVELELACEQLTVNEPDVEALQTLFSRYEFKRWLADLQEGKWLQGK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                              SL D+ +   +E             
Sbjct: 301 KSNSQAQ---------------------------KSLLDEPAVAAAETV----------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                +++D Y  I++      W++KL++    +F + TD++D   +  + IA +    K
Sbjct: 323 ---SVLSSDGYVTILDEATFADWLKKLQSADVFAFDLETDSLDTLSANIVGIAFAVAPGK 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                  +L  LK   E+    K+G N+KYD+ VL 
Sbjct: 380 -AAYLPVAHDYLDAPP---------QLDRAAVLKQLKPLLEDSKAAKVGQNLKYDRGVLK 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            Y I + G   D ML SY L+S    HD+ S+A +WL++     +EI    K  +  ++I
Sbjct: 430 NYDIELNGIKFDTMLESYCLNSVGGKHDMDSLAARWLNHKTVTFEEIAGKGKYQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   +A E+++V LQL L + PKL  E     V+E ++ P++ V+S++E  G+ IDQ
Sbjct: 490 ALEQAAHYAAEDADVTLQLHLQMWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVLIDQ 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L + S E++  L  LE+  ++L+GE FNLSS KQL  ILF K +     KT  G   T
Sbjct: 550 NILAKHSQELTTRLAELEQKAHELAGEPFNLSSTKQLQTILFEKQEIKPTKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L ++   D P+ K ILE R LSK+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 610 SEKVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPQMINPITGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+   K++++ADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSNDPNLQNIPVRNEEGRRIRQAFIAGADKRIVAADYSQIELRIMAHLSQDKGLLDAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FGV + KVS + RR AK INF +IYG+S F L+ QL I   EA  Y+
Sbjct: 729 QGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E T+      GYVET+ GRR+   +INS  +  R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLRYMEATRAQAADKGYVETLDGRRLWLPDINSSNAIRRKAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI +RAMI+V    L+ +    KM++Q+HDELVFE+ ++ +  ASQ I   ME  
Sbjct: 849 QGTAADIIKRAMIAVDGWLLQQNSDEVKMIMQVHDELVFEIHKDAVAGASQTIRELMEN- 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL+V +   +NW + +
Sbjct: 908 ---SMKLDVPLQVEVGTGDNWDQAH 929


>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
 gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
          Length = 932

 Score =  968 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/980 (40%), Positives = 592/980 (60%), Gaps = 60/980 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ +      +H A
Sbjct: 7   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E +GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDKYKANREAMPEDLRPQIPLTRTATEAFNIACKEKEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G   TIIS+DKDLMQLV     + D +K + ID + V +K+G+ P+++V +
Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKSIDRDGVFEKFGVYPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L  A  IKQ KRR+ ++++A+  RL
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLERAGEIKQPKRRQTLIDHADQIRL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV L  + P+   LE L + D +  +L+ FL  +                       
Sbjct: 247 SRDLVKLDENTPLDFTLEDLEVRDPDADQLLGFLAEM----------------------- 283

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP---QKLFLERLQKLS 359
                                      +F +LS + +++  ++ P   +      +   +
Sbjct: 284 ---------------------------EFRTLSKRVAEVLGKEAPTIAEAPVAADVPAAA 316

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P + + Y  + +T  +Q W+ ++   G  +    T  +D   ++ + +++     K  
Sbjct: 317 DVPFDAELYEHVSDTAALQAWIDRIYEFGYVAVDTETTGLDDMVAQLVGVSLCVEPGKAC 376

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               +        +  S D       T+E L  L    E+   LKIG N+KYD  +  + 
Sbjct: 377 YIPLIHKARGSDDLFGSDDLAEGQIPTEEALRLLTPMLEDHSILKIGQNMKYDSKIFAQL 436

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           GI++   +D ML+SY + +G   H + ++++++LS+T    K +L + KS+I  DK+  +
Sbjct: 437 GINVAPIDDTMLLSYAMHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLA 496

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              ++A E++++ L+LW L +P+L    +  VYE L++P++ V++ ME +G+++D+D L 
Sbjct: 497 DAVKYAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVSVLAAMERSGVKVDRDTLS 556

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S   ++ +  LE+ IY+L+G KFN+ SPKQLG+ILF ++    G K KTG + T A  
Sbjct: 557 RMSNAFAQKMAGLEDEIYELAGRKFNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADV 616

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGRLAS 
Sbjct: 617 LEDL-ATEHDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLAST 675

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+++ G++IR AF++ P K L++ DYSQIELRILAHIA I  L Q F++ +D
Sbjct: 676 DPNLQNIPIRSEEGRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELKQAFQDGID 735

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH + A+E+FGV +++++  +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF
Sbjct: 736 IHALTASEMFGVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYF 795

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFPGI  Y+  TK F +++G+V+T+FGR+IH  EIN+ K       +RAAINAPIQG+A
Sbjct: 796 ERFPGIRTYMNDTKAFAKEHGFVQTLFGRKIHTPEINA-KGPRAGFAQRAAINAPIQGTA 854

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ RRAMI +  +++D  L   MLLQ+HDEL+FEV +             ME A  P +
Sbjct: 855 ADVIRRAMIRMPHAIKD--LPATMLLQVHDELLFEVEKGAEDDLIAAARQVMENAADPVV 912

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L V L V+  V  +W E +
Sbjct: 913 KLDVKLDVDAGVGASWAEAH 932


>gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1]
 gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1]
          Length = 929

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/977 (40%), Positives = 586/977 (59%), Gaps = 55/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL LVDGS+FI+RA++A P L+RK DGLP+ A+AGFCNML K+++ +      +H A
Sbjct: 5   KGHHLHLVDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHKMIEGNTGPDAPTHAA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF +  IE++GFEADDIIA
Sbjct: 65  VIFDKGSHTFRNDLYDQYKANRDAMPEDLRPQIPLTRDATRAFNLACIEMEGFEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY  +A + G   TIIS+DKD+MQLV     ++D +K  +ID E V  K+G+ PE++V +
Sbjct: 125 TYARMAREAGGRCTIISSDKDMMQLVGDGVEMFDAMKNTRIDREGVEAKFGVGPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L  A  IKQ KRR+ ++++A+  RL
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLDRAEEIKQPKRRQTLIDHADQIRL 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV+L  +V +   L+ L + + +   L++FL  +EF  L  R+A +   +A  IE  
Sbjct: 245 SRQLVLLDENVELEDGLDALDVREPDHDTLLAFLAEMEFRTLTKRIADSAGVEAPVIE-- 302

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                                        +             P
Sbjct: 303 ---------------------------------------------EPAPEAAPDAPEMPP 317

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I++  Y  + + K +Q WV +    G  +F   T +++   ++ + +++           
Sbjct: 318 IDHAKYEVVNDVKTLQAWVDRAVVRGEVAFDTETTSLNEMTAELVGVSLCIEPG-AACYI 376

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +        +              + +  L+   E+   +K+  N KYD  VL  YG+ 
Sbjct: 377 PLLHRGGGDDLFADTSLAEGQIPFDDAMEILQPMLEDRSVMKVAQNAKYDVKVLANYGVE 436

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D ML+SY L +G  +H +  +A+++L +T    K ++ S KS I  D++  +   
Sbjct: 437 VAPIDDTMLLSYALHAGLHNHGMDGLAERYLGHTPLPIKSLIGSGKSQITFDRVPIADAA 496

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+   L +PKL    +  VYERL++P++ V+++ME +GI++D+D+L ++S
Sbjct: 497 PYAAEDADITLRFHKLFKPKLHQVGVTKVYERLERPLVPVLARMERSGIKVDKDVLSRMS 556

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I++L+GE FN+ SP QLG+ILF K+    G K KTG++  T  D+ +
Sbjct: 557 NAFAQKMAGLEAEIHELAGESFNVGSPAQLGEILFDKMGLQGGKKGKTGKYS-TGADILE 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++ +   +L+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGRLAS +PN
Sbjct: 616 DLATEHDLPGRVLDWRQLSKLKSTYTDALQDHINADTGRVHTSYSIAGANTGRLASTDPN 675

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G++IR AF++ P K L++ DYSQIELRILAHIA I  L   F++  DIH 
Sbjct: 676 LQNIPIRSEEGRRIREAFVAEPGKVLVALDYSQIELRILAHIAGIDALKDAFKDGQDIHA 735

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+F V +E+++P +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF RF
Sbjct: 736 ATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFERF 795

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y++ TK F ++N YV+T+FGR+IH  EIN+ K        RAAINAPIQG+AADI
Sbjct: 796 PGIRTYMDDTKKFAKENLYVQTLFGRKIHTPEINA-KGPGAGFAGRAAINAPIQGTAADI 854

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI +  ++    +  KMLLQ+HDELVFEV E+   T        ME A  P ++L 
Sbjct: 855 IRRAMIRMEDAI--EGIPAKMLLQVHDELVFEVDEDATDTLIARAREVMEGAADPAVHLS 912

Query: 960 VPLKVNIKVSNNWQEEN 976
           VP+ V+      W E +
Sbjct: 913 VPITVDAGQGETWAEAH 929


>gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001]
 gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001]
          Length = 1047

 Score =  967 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1033 (40%), Positives = 612/1033 (59%), Gaps = 61/1033 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ+       
Sbjct: 16   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQDGAAGVKP 75

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E++ +EAD
Sbjct: 76   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELERYEAD 135

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY   AE  G  V I+S+DKDLMQLVS     YD             E  +D + +
Sbjct: 136  DLIATYARQAEARGAEVIIVSSDKDLMQLVSDRIRFYDFESGAKGKPGYRPERNLDRDAI 195

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+L  +L  A+ IKQ 
Sbjct: 196  IAKWEGLTPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLAQLLERAAEIKQP 255

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 256  KRRETLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315

Query: 288  VATTYDCDAANIEPVVL------------------------DINTTENKGIAIETEIDRD 323
            +A     D   ++P                           D    + +  A     D  
Sbjct: 316  IAQMLHVDPEAVKPDPALLPGAQPHAYTNAAGGSDAVPFFGDAVPVDPETAAAPERTDGA 375

Query: 324  TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D        +  +  +E TP  L   R  + +  P +  +Y  I   +
Sbjct: 376  APPEAGEADPFADLDLPDQAPKKKRGAAEPTPANLVAARAAE-AVKPFDTAAYETIATVE 434

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 435  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494

Query: 432  -----SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                 +     D           L  LK   E+   LK+G N+KYD  VLHRYGI +  F
Sbjct: 495  FGDGGAGADESDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDFSVLHRYGIDVAPF 554

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +      ++  + ++ +  D+++  +   +A 
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 615  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GEKF +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 675  QILARLEEEIQEDAGEKFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL WRQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 735  GHDLPKKILNWRQLSKLKSTYTDSLQEHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  LDIH   A+
Sbjct: 795  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATAS 854

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 855  AMFGVPLDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 915  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +L   KLA +MLLQ+HDELVFEVP++E+     +I H ME+A  P ++L VPL 
Sbjct: 975  MTRMEDALGAEKLAARMLLQVHDELVFEVPDDEVEATIPVIAHVMEEAPAPALSLSVPLV 1034

Query: 964  VNIKVSNNWQEEN 976
            V  + + NW+E +
Sbjct: 1035 VEARAAGNWEEAH 1047


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score =  967 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/998 (35%), Positives = 544/998 (54%), Gaps = 71/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDANPVTQ 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N E  +                         + + + +     + +EQT           
Sbjct: 301 NSEEKI------------------------PNNYQATASVPQAVETEQT----------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            ++  I+   Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 326 FAKVEIDRSRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFL 463
              +         +E    DL    ++       +   K       L+ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +   +G+ + G   D ML SY L+S    H++  +A ++L +     +E
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNST-GRHNMDELADRYLGHKTIEFEE 504

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMID 578
           I    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P+++
Sbjct: 505 IAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVE 564

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFTKL 
Sbjct: 565 VLSRIERNGVLIDPEKLLAQSAEIEQRLSELEQLVHSEAGEVFNLASTKQLQEILFTKLG 624

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN +T R
Sbjct: 625 LPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGR 684

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI+
Sbjct: 685 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIM 744

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F L+
Sbjct: 745 AHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLS 804

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S  + 
Sbjct: 805 NQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAM 864

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE + 
Sbjct: 865 RRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEELVE 923

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             SQ+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 924 HYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDEAH 957


>gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 932

 Score =  967 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/985 (35%), Positives = 536/985 (54%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NA+ G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVINMVRAMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+YP+YKA RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELYPEYKAQRPPMPDDLRCQIEPLHNVIRAMGLPLLSIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             + A + G  V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   
Sbjct: 121 LAHQASQAGIPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N  +I        K   + + +  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTALYDNLDKIADLGFRGSKTMAKKLEDNR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS +L  ++ DV +    E L+    +   LI     L F   +N +         
Sbjct: 241 ANAELSYELATIKLDVALDCTPETLLKATPDRDALIELYGQLSFKSWLNELL-------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E     +E       ++  S  S  +     +                
Sbjct: 293 ------------EGGTGVVEAAEKSAASVAVSGASQAAPMADSV---------------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  IV+     +W+ KL +    +F   TD++D   +  + ++ +  +  
Sbjct: 325 --AVKIDRSQYETIVDEAAFNRWLDKLRSAEVFAFDTETDSLDYMVANLVGVSFAVAEG- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D           L+ LK   E+    K+G N+KYD  +L 
Sbjct: 382 EAAYVPVAHDYLDAPQQLDRD---------WALAQLKPILEDAQQAKVGQNLKYDASILA 432

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I+M+G   D ML SYV +S    HD+ S+A +++ ++    +++    K+ +  ++I
Sbjct: 433 RYDINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQHSCISFEQVAGKGKNQLTFNQI 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L P L  + KLL VY  ++ P++ V+S++E TG+ I+ 
Sbjct: 493 DLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYRDIEMPLVPVLSRIERTGVLIND 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL   S EI++ L  LE+  +D++G++FNLSSPKQL  I F ++K P   KT +G   T
Sbjct: 553 MLLGAQSQEIAQRLDELEKKAFDIAGQEFNLSSPKQLQTIFFDQMKLPVIKKTPSGTPST 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+   ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 613 NEEVLQELAL-DYPLPAVILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L + F+
Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQ 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAEI G++I++V+ + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 732 QGKDIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++   + GYVET+FGRR+H  EI S     R   ERAAINAP+
Sbjct: 792 DTYFERYPGVMQYMEDTRSTAAEQGYVETLFGRRLHLPEITSRNGMRRKAAERAAINAPM 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V   +E       K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 852 QGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESALSEIESKVQKLMESA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL       +NW E +
Sbjct: 912 AA----LKVPLVAEAGHGDNWDEAH 932


>gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48]
 gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48]
          Length = 953

 Score =  967 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/982 (42%), Positives = 598/982 (60%), Gaps = 38/982 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L L+DGS +I+RA++  P L+RK DGLPV A++GFCNML+KL++ +R E   SH A
Sbjct: 2   SPKRLVLIDGSGYIFRAYHGLPPLTRKSDGLPVGAVSGFCNMLYKLIKENRGEDAPSHLA 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  A TFRN++Y  YKA+RP  PE L+PQ PL+R AT+AFGI  +E+ GFEADD+I 
Sbjct: 62  VIFDAGAHTFRNDLYDQYKAHRPPPPEDLIPQFPLIRQATRAFGIHNVELLGFEADDLIC 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY ++A ++GF VTIIS+DKDLMQ+V+    + D VK   +  E VI+K+G+PPE +V  
Sbjct: 122 TYAHLAVQQGFEVTIISSDKDLMQVVNDHVSMLDPVKGTHVGREQVIEKFGVPPELVVDA 181

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS DN+PG PGIG KTAA L+ EYG+L+ +L  A  IKQ KRRE + ++ +   +
Sbjct: 182 QALIGDSTDNVPGAPGIGIKTAAQLILEYGSLDALLKRAHEIKQPKRREALTDFRDQILM 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV LR DVP   P+E   L+D N   L +FL  +EFT L  RV  +           
Sbjct: 242 SRELVRLRCDVPPPCPIEEFALKDPNAAELGAFLAEMEFTSLARRVGGSLATLE------ 295

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                       A     D    +    F +++  ++   +  TP+ L           P
Sbjct: 296 -----------TAQAAPRDLTAPVSKPLFGTMAQVSAPRPA--TPEALLT---------P 333

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++  +Y  + + + ++ ++ +    G  +    TD++ A  S  + +++S          
Sbjct: 334 VDYSAYQCVQDIEALKAYLVQCRAAGVFAVDTETDSLSATASGLVGVSLSCAPGSG-VYI 392

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +     D  +  S D   K     E L+ LK   E+   LK+G NIKYD  V  RYGI 
Sbjct: 393 PLSHQSDDGGLALSGDEF-KQIALVEALAELKPLLEDPTVLKVGQNIKYDLSVFARYGIR 451

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539
           +  ++D ML+SYVL+ G   H +  +++  L +     K++  + KS+     +      
Sbjct: 452 VAPYDDTMLISYVLEGGLHGHGMDELSELHLGHTPIPFKQVAGTGKSAKSFKFVDLKPAT 511

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E+A E++++ L+LW +L+P+L  ++LL VYE L++ M  V+S ME+ G++ID  +L+ +S
Sbjct: 512 EYAAEDADITLRLWHVLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQVLRLLS 571

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +    +  +E   + ++G  FNL+SP+QLG I F ++  P G KT TGQW T  + LE+
Sbjct: 572 QDFGVRMGEIETEAHTVAGHPFNLNSPQQLGAIFFDEMALPGGKKTATGQWATDVKVLEE 631

Query: 660 INCGDNP-----IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           I           + + +L++RQ++K+K TY D+L  + + +TQR+HT Y LAST TGRL+
Sbjct: 632 IAEKGTHDQGQRLARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQLASTTTGRLS 691

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPI+T  G+KIR AF++    KLISADYSQIELR+LAHI  I  L + F++ 
Sbjct: 692 SNEPNLQNIPIRTLEGRKIRTAFVARAGHKLISADYSQIELRLLAHIGDIGQLKKAFQDG 751

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH + A+E+FGV +E +  ++RR AK INF IIYGIS F L  QL I   EA  YIK 
Sbjct: 752 IDIHALTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLGNQLGIDNQEAGRYIKT 811

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI  Y++  K  V+  GYVETIFGRRIH  +I++  +  R   ERAAINAPIQG
Sbjct: 812 YFERFPGIKAYMDAAKEQVKATGYVETIFGRRIHIPDIHAKSAGQRAFAERAAINAPIQG 871

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +LE   L T MLLQ+HDEL+FE PE E+  A  +IV  M+ A LP
Sbjct: 872 TAADIIRRAMIRMPGALEAAGLTTTMLLQVHDELIFEAPEAEVEAAKAVIVEVMKHAALP 931

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            +++ VPL+V  K ++NW E +
Sbjct: 932 ALDISVPLEVEAKAADNWDEAH 953


>gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score =  967 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/998 (35%), Positives = 544/998 (54%), Gaps = 71/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDANPVTQ 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N E  +                         + + + +     + +EQT           
Sbjct: 301 NSEEKI------------------------PNNYQATASVPQAVETEQT----------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            ++  I+   Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 326 FAKVEIDRSRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFL 463
              +         +E    DL    ++       +   K       L+ LK   EN    
Sbjct: 386 ACYIPLMHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +   +G+ + G   D ML SY L+S    H++  +A ++L +     +E
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNST-GRHNMDELADRYLGHKTIEFEE 504

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMID 578
           I    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P+++
Sbjct: 505 IAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVE 564

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFTKL 
Sbjct: 565 VLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFTKLG 624

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN +T R
Sbjct: 625 LPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGR 684

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI+
Sbjct: 685 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIM 744

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F L+
Sbjct: 745 AHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLS 804

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S  + 
Sbjct: 805 NQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAM 864

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE + 
Sbjct: 865 RRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEELVE 923

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             SQ+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 924 HYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDEAH 957


>gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
 gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
          Length = 977

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1000 (35%), Positives = 533/1000 (53%), Gaps = 47/1000 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS+++RA++A P L R   G P  AI G   ML +L  ++R    A+ 
Sbjct: 1   MTDTQTLLLVDGSSYLFRAYHALPDL-RNKAGEPTGAIHGMVGMLRRLRDDTRLHGGATL 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD P  TFR+++Y  YKANR + PE L+ Q+  +   TQA G P + + G EADD+
Sbjct: 60  GAVIFDAPGRTFRDDLYEYYKANRSQTPEALVAQIAPIHELTQALGWPLLVVPGIEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIP 175
           I T    A   G    I + DKDL QLV   T L +T+         +D   V  K+G+ 
Sbjct: 120 IGTLATRARAAGMRTVISTGDKDLAQLVDDETLLVNTMTRDGVPPTVMDAAGVRDKFGVD 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++    LTGD++DN+PG+  +G KTAA  L EYG+L+ IL +A  IK  K  EN+  
Sbjct: 180 PGQIIDFLTLTGDAVDNVPGVDKVGPKTAAKWLNEYGSLDAILQHADEIKG-KVGENLRA 238

Query: 236 YAETARLSRKLVMLRTDVPIT---IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             +     R+LV +  D  ++     +E L L   +   L+      E      R+    
Sbjct: 239 ARDWLPRGRELVTVLRDADLSAWVGGVETLKLRPEDEEALLGLFDRWELRTFARRLVADR 298

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
               A        +    +   A   E        + Q S+ +                L
Sbjct: 299 QRREAGA-----GMGHGADTTGAAAGEGASAGQGTSGQVSAGAAGGRAGRGAAGDGTAGL 353

Query: 353 ERLQKL-----------SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
           E L                 P        +     +  W+ +++     +    T + D 
Sbjct: 354 EALPGGIGHFTRDGIVLEAPPAGELQAETVTTCAALDAWLARVQAADRVAIDTETTSKDP 413

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             ++ + I+++    +          +I +  + +     +     E+L+ LK + E++ 
Sbjct: 414 HAARLVGISLAVTPWQG--------CYIPVGHNYA--GVPEQLPLDEVLAVLKPWLESDA 463

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTR 517
             K+G NIKYD  VL  +GI++RG  +D ML SYVL++ R+ H + ++A + L+    T 
Sbjct: 464 QQKVGQNIKYDMHVLANHGITLRGVVDDTMLESYVLEAHRT-HGMDALAGRHLNRTTITY 522

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPM 576
           +E+      +I  D+++      +A E+++V LQL   L P +   E+L H+Y  ++ P 
Sbjct: 523 EEVAGKGAKAIGFDQVALDVATPYAAEDADVTLQLHRTLWPAIEASERLRHIYRNIEMPT 582

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+  ME  G+ +D+D L+  S ++++ L  LE   ++L+G+ FNL S KQLG+ILF +
Sbjct: 583 LQVLYDMERHGVLLDRDRLRAQSQQLAEQLQELERQAHELAGQPFNLGSTKQLGEILFER 642

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L  P   KT  G+  T    LE++   D P+ K +L+WR L+K+KSTY D LP  ++ +T
Sbjct: 643 LGLPVVKKTPAGKPSTDESVLEKLAL-DYPLPKVLLQWRGLAKLKSTYTDKLPEMVDPKT 701

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT YS A  +TGRLAS +PNLQNIP++T  G++IR AFI+PP  +++SADYSQIELR
Sbjct: 702 GRVHTTYSQAVAITGRLASSDPNLQNIPVRTPEGRRIREAFIAPPGHQMMSADYSQIELR 761

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AHI++   L + F +  D+HR  A+E+FGV I +V+ + RR+AK INF +IYG+S F 
Sbjct: 762 IMAHISQDAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAKVINFGLIYGMSAFG 821

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA  L I R  A  YI RYF R+PG+  Y+E+T+   R+ GYVET+FGRR+   EI S  
Sbjct: 822 LAANLGIERGAAQAYIDRYFARYPGVAAYMERTRAQAREQGYVETVFGRRLWLPEIGSSN 881

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
              R + ERAAINAP+QG+AAD+ + AMI VH  L    L  ++++Q+HDELV EVP+ E
Sbjct: 882 MGRRQMAERAAINAPMQGTAADLIKLAMIDVHAWLRRENLGARLVMQVHDELVLEVPDAE 941

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +      +   M         L VPL   + V  NW++ +
Sbjct: 942 VERLKTDLPARMAGVA----QLSVPLLAEVGVGENWEQAH 977


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/998 (35%), Positives = 543/998 (54%), Gaps = 71/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNNANPVTQ 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N E  +                         + + + +     + +EQT           
Sbjct: 301 NSEEKI------------------------PNNYQATASVPQAVETEQT----------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            ++  I+   Y  +   + +Q W++K+  +   +    TD +D+  +  + I+       
Sbjct: 326 FAKVEIDRSRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGISFGLANGD 385

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFL 463
              +         +E    DL    ++       +   K       L+ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +   +G+ + G   D ML SY L+S    H++  +A ++L +     +E
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNST-GRHNMDELADRYLGHKTIEFEE 504

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMID 578
           I    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P+++
Sbjct: 505 IAGKGKNQLTFDKIAIDIASQYAAEDADVTMKLHQVLSPELEKAPTLVKLFNEIEMPLVE 564

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFTKL 
Sbjct: 565 VLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFTKLG 624

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN +T R
Sbjct: 625 LPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGR 684

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI+
Sbjct: 685 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIM 744

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F L+
Sbjct: 745 AHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLS 804

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S  + 
Sbjct: 805 NQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAM 864

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE I 
Sbjct: 865 RRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEELIE 923

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             SQ+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 924 HYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDEAH 957


>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
 gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
          Length = 1013

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1003 (42%), Positives = 603/1003 (60%), Gaps = 28/1003 (2%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            Q  +H+FLVDGSSF++RA++ +     K     DGLP  A+  FC  +++ ++       
Sbjct: 11   QSGDHVFLVDGSSFVFRAYFQSIRQDAKYNYRSDGLPTGAVRLFCTKIFQFVREGAAGVK 70

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H A+IFD    +FR EIYP YK NR + PE L+PQ PL+R A +AFG+  +E   +EA
Sbjct: 71   PTHLAIIFDKSENSFRKEIYPPYKGNRSEPPEDLIPQFPLMRAAVRAFGLLPVEQDRYEA 130

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----------KIDIEH 167
            DD+IATY   A + G  VTIIS DKDLMQL+ P   +YD    E          +I ++ 
Sbjct: 131  DDLIATYARQARERGADVTIISADKDLMQLIGPGVSMYDPASGEAGAKGSREERRIGVDE 190

Query: 168  VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            V+  +G+PPEK+V +QAL GDS DN+PG  GIG KTAA L+ EYG+L+ +L  A  IKQ 
Sbjct: 191  VLAYFGVPPEKVVDVQALAGDSTDNVPGARGIGLKTAAQLIGEYGDLDTLLARAGEIKQP 250

Query: 228  KRRENILEYAETARL--SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            KRRE + +    A +  SRKLV L  DV +  PL+ L L    G  L++F KALEFT L 
Sbjct: 251  KRREILTDADSVALIRTSRKLVELVCDVEVETPLDDLRLAAPEGKTLVAFCKALEFTTLT 310

Query: 286  NRVATTYDCDAANIEPVVLDINTTENKG---------IAIETEIDRDTTIKTSQFSSLSD 336
             RVA     + A IEP          +G          A ET    +      + +    
Sbjct: 311  RRVAEACAVEPALIEPDPDFAGEAGWRGRNGAPPPVSTAAETPSAENLPQGPKRNARYGA 370

Query: 337  QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396
            +  +      P +L   R  +      +  +Y  IV+ + ++ ++ +    G  +    T
Sbjct: 371  EAPQQTIATGPGELAAARAAQARAEKFDLGAYETIVSFERLEAYIAEAIESGIIAIDTET 430

Query: 397  DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
             ++D   ++ + +++     +               +    D       + E L+ LK  
Sbjct: 431  SSLDPMQAELVGLSLCLAPGRAAYVPLRHRGEGAGDLFGGADLVPGQLDSDETLARLKPM 490

Query: 457  FENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
             E    LKI  N K+D+LVL + GI +   +D +L+SYVLD+GR+ H +  +A+K+  + 
Sbjct: 491  LEAPDVLKIAQNAKFDQLVLAQRGIRLAPVDDTLLLSYVLDAGRTDHGMDVLAEKYFGHR 550

Query: 517  RKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
              +   +  S ++ I   +++  +  E++ E+++V L+LW +L+P+L  E++  VYE L+
Sbjct: 551  PIQFGAVAGSGRTFIGFARVALDKATEYSAEDADVTLRLWRVLKPRLAAERMSAVYETLE 610

Query: 574  KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            +PM++ +++ME  G+ ID+ +L ++S E ++++  LE  I++L+GE FNL SPKQLGDIL
Sbjct: 611  RPMVETLARMERRGVSIDRAILSRLSGEFAQDMARLEAVIFELAGESFNLGSPKQLGDIL 670

Query: 634  FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            F K+      KT TG W T A  L+ +     P+   IL+WRQLSK+KSTY D+LP+++N
Sbjct: 671  FGKMGLAGARKTATGAWSTAAGVLDDLAEQGVPLAARILDWRQLSKLKSTYTDALPSYVN 730

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
              T RVHT Y+LA+T TGRL+S EPNLQNIP++ + G+KIR+AFI+PP +KLISADYSQI
Sbjct: 731  PETGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFIAPPGRKLISADYSQI 790

Query: 754  ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
            ELR+LAHIA I+ L   F  +LDIH M A+E+FGV +E + P++RR AK INF IIYGIS
Sbjct: 791  ELRLLAHIADISQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKAINFGIIYGIS 850

Query: 814  PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             F LA QL IPR EA  YIKRYF RFPGI  Y++ TK F R+NGYV TIFGR+ HY  I 
Sbjct: 851  AFGLANQLAIPREEAGAYIKRYFERFPGIRAYMDATKQFARENGYVTTIFGRKCHYPRIT 910

Query: 874  SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
            +   S R  NERAAINAPIQGSAADI RRAM+ + ++LE   L+ +MLLQ+HDELVFE P
Sbjct: 911  ASNPSERAFNERAAINAPIQGSAADIIRRAMVRMDEALEKAGLSAQMLLQVHDELVFEAP 970

Query: 934  EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +EEI     ++   M  A  P + L VPL+V+ K + NW E +
Sbjct: 971  DEEIDATIDVVRKVMVDAPHPFLQLAVPLQVDAKAAQNWDEAH 1013


>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
 gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
          Length = 936

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/989 (40%), Positives = 584/989 (59%), Gaps = 74/989 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A++GF NML + ++N+     A+H A
Sbjct: 7   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFVNMLQRYVENNSGADAATHVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   E++GFEADDIIA
Sbjct: 67  VIFDKGSHTFRNDMYDQYKANREAMPEELRPQIPLTRDATRAFNIACEEVEGFEADDIIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + A + G  VTI+S+DKDLMQLV     + D +K ++ID + V +K+G+ P+++V +
Sbjct: 127 TLAHQARRAGGRVTIVSSDKDLMQLVGDGVEMLDPMKNKRIDRDGVFEKFGVFPDRVVDV 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE++L  A  I Q KRRE ++ +     L
Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLESLLERAGEITQPKRRETLVNHRAQIEL 246

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D+ +   L+ L +   +   L++FL  +EF  +  R+A      A  IE  
Sbjct: 247 SKRLVQLDCDMVLDFGLDDLEIRLPDPDTLLAFLAQMEFRTVSKRIADKLGVAAPVIE-- 304

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                                   +E  P          +   P
Sbjct: 305 -----------------------------------APAPATETAP----------IEAVP 319

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + DSY  + +   +Q W+ ++   G  +    T ++D   +  + I++           
Sbjct: 320 FDADSYECVRDATALQVWIDRIYEAGHVAVDTETTSLDEMRADLVGISLCVAAG------ 373

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE-------ILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +  +I L+     D    +    E        L+ LK   E+   LKIG N+KYD  +
Sbjct: 374 --QACYIPLAHKAGADDLFGSDARAEGQMDMAACLAMLKPVLEDASILKIGQNMKYDAKI 431

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
               GI++   +D MLMSY + +G  +H + ++++++L +     K +L S KS+I  D+
Sbjct: 432 FALLGIAVAPIDDTMLMSYAMHAGLHNHGMDTLSERYLGHIPIPIKPLLGSGKSAITFDR 491

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +      ++A E+++V L+LW + +P+L   ++  VYE L++P++ V++QME+ GI++D+
Sbjct: 492 VPVDDAVKYAAEDADVTLRLWQMFKPQLHQSRVTTVYETLERPLVPVLAQMEMHGIKVDR 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-----PSGAKTKT 647
           D L ++S   ++ +  LE+ I  ++G  FN+ SPKQLG+ILF +L          AK KT
Sbjct: 552 DTLSRMSNAFAQKMAGLEDEIQKMAGRPFNVGSPKQLGEILFDELGLAMPDGKLPAKGKT 611

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T A  LE +    + + + IL+WRQL+K+KSTY D+L +HIN  T RVHT YS+A 
Sbjct: 612 GAYSTGADVLEDL-ATIHDLPRRILDWRQLAKLKSTYTDALQDHINPDTGRVHTSYSIAG 670

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRLAS +PNLQNIP+++D G++IR AF++ P   ++S DYSQIELRILAHIA I  L
Sbjct: 671 AITGRLASTDPNLQNIPVRSDEGRRIREAFVAAPGNVIVSLDYSQIELRILAHIAGIDAL 730

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            Q F + +DIH M A+E+F V +++++P +RR AK INF +IYGIS F LA  LRIPRS+
Sbjct: 731 KQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRSD 790

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +I RYF RFPGI +Y++ T  F R  GYV+T+FGRRI+  EIN  K       +RAA
Sbjct: 791 AQGFIDRYFERFPGIRQYMDDTVAFARDRGYVQTLFGRRINTPEIN-TKGPQAGFAKRAA 849

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AAD+ RRAMI + K++    L  KMLLQ+HDEL+FEV          I    
Sbjct: 850 INAPIQGTAADVIRRAMIRMPKAI--AGLPAKMLLQVHDELLFEVDATAADDLIGIARQV 907

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A  P + L V L V+     NW   +
Sbjct: 908 METASDPAVKLDVKLSVDAGQGPNWATAH 936


>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
 gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
          Length = 949

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/985 (35%), Positives = 551/985 (55%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 23  ENPFILVDGSSYLYRAYHAFPPLTNSQ-GEPTGAMYGVLNMLRSLIIQYK----PSHVAV 77

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YK+NRP +P+ L  Q+  +    QA G+P + I G EADD+I T
Sbjct: 78  VFDAKGKTFRDELYEEYKSNRPPMPDDLREQIAPLHEMVQAMGLPLLSISGVEADDVIGT 137

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 138 LALKAAADGRDVLISTGDKDMAQLVTPKITLINTMTNVILGPDEVKEKYGVPPELIIDFL 197

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G+L++I      I        K     + E+ 
Sbjct: 198 ALMGDSSDNIPGVPGVGEKTALGLLQGLGSLDDIYQQLDNIATLSFRGAKTLGAKMAEHE 257

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A+LS KL  ++TDV +    + L++ + N  +L+      EF + I+ +         
Sbjct: 258 KVAKLSYKLATIKTDVELDKTFDDLVVSEPNLEQLLEMFTRYEFKRWISDLQNGGWLAQR 317

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + + V +   +   K                                        E    
Sbjct: 318 STQKVAVPYTSEAVK--------------------------------------SKEASAS 339

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I  ++Y  I+  + + +WV+ L+   + +F   TD+++   ++ I ++ +    K
Sbjct: 340 ANFPVITQENYEAILTHESLARWVELLKKAPAFAFDTETDSLNNIDARLIGMSFAIEPGK 399

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D           +     ++L+ LK   E+++ LKIG N+K+D+ ++ 
Sbjct: 400 -AAYIPLRHEYLDAP---------EQLPVNDVLAALKPILEDKNILKIGQNLKFDRGIME 449

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI + G   D ML SYVL+S  + HD+ ++A+K L++     +EI    K  +  ++I
Sbjct: 450 NEGIELNGIHFDTMLESYVLNSVSNRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLTFNQI 509

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ L L   L P++   E L HVY  ++ P++ V+S+ME  G+ ID 
Sbjct: 510 EVEQATLYAAEDADITLLLHQALYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKGVLIDA 569

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S EI++ L  +E+  + L+G++FNLSSPKQL +ILF KL+ P   KT  G   T
Sbjct: 570 QVLAVQSQEITQRLAEIEKETFALAGQEFNLSSPKQLQEILFDKLQLPVIKKTPKGAPST 629

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE++    + + + ILE R L+K+KSTY D LP  +N +T+RVHT Y  A T TGR
Sbjct: 630 NEEVLEEL-AHSHELPRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGR 688

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+    K+++ADYSQIELRI+AH+++   L   F 
Sbjct: 689 LSSRDPNLQNIPVRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGLLDAFA 748

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  A+E+FG+ +E+V+ + RR AK INF +IYG+S F L+ Q+ + R EA  Y+
Sbjct: 749 QGKDIHRATASEVFGIPLEEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGVERREAQRYM 808

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    + GYVET+ GRR++  EINS  +  R  +ER AINAP+
Sbjct: 809 DLYFERYPGVLDYMERTRKQASEQGYVETLEGRRLYLPEINSKNAIRRKASEREAINAPM 868

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI+V   +  +      M++Q+HDELVFEV E  +  A+ +I   ME  
Sbjct: 869 QGTAADIIKKAMIAVDNWICNECPADVHMIMQVHDELVFEVRESYLENANIMIHKLMES- 927

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L +PLKV + V NNW E +
Sbjct: 928 ---SMELAIPLKVEVGVGNNWDEAH 949


>gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
 gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
          Length = 994

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/982 (40%), Positives = 574/982 (58%), Gaps = 44/982 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L+L+D S++I+RA++A P L+RK DGLPV A+ G+CNMLWKLL++ +     +H A IF
Sbjct: 46  RLWLIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGADGPTHLAAIF 105

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   TFRN +Y  YKANR   PE L+PQ PLVR AT+AFG+  +E+ G+EADD+IATY 
Sbjct: 106 DHSEKTFRNALYDQYKANRSAPPEDLVPQFPLVRDATRAFGVHCVELPGYEADDLIATYA 165

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
                 G    I+S+DKDLMQL+ P+  ++D +K+ ++  + V++K+G+ P+KM+ LQAL
Sbjct: 166 CKVRDAGGECVIVSSDKDLMQLIGPSVVMWDPMKDRRLAEDAVMEKFGVTPDKMIDLQAL 225

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG PGIG KTAA LL EYG+L+ +L  A  IKQ KRRE ++ + +   LSR+
Sbjct: 226 IGDSVDNVPGAPGIGPKTAAQLLDEYGDLDTLLERAGEIKQPKRRETLINFRDQILLSRQ 285

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D P   P++   + D +   L  FL+ +EF  L+ RV                D
Sbjct: 286 LVRLTCDAPAPEPIDDFRVRDPDPQTLADFLETMEFRSLLRRVG---------------D 330

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                + G A         +                    +P+         + +  +++
Sbjct: 331 GKLAGHDGSAFAPARPAPLSAPVI----------------SPRYAPQAVSADVEKQSVDH 374

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           D+Y  I +  D+  ++ +    G   F   TD + A H+    ++++     D     + 
Sbjct: 375 DAYHCIRDLADLDAFIARATEAGVVGFDTETDALSATHAGLCGVSLAIGPN-DACYVPLT 433

Query: 426 TIFIDLSVHTSQDSTGK--------NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                +      D  G               +L+ LK   E+   LK+  N KYD  V+ 
Sbjct: 434 HEHPPVEGAGGLDFGGDTDARPPLDQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMA 493

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           R GI +   +D ML+SYVL+ G   H +  +++  L +     K +  + K+      + 
Sbjct: 494 RRGIRVAPIDDTMLISYVLEGGLHGHGMDELSRLHLGHEPIPFKSVAGTGKAQKSFKHVE 553

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                 +A E+++V L+LW +L+P+L  E+L  VYE L++ M  V++ ME+ GI++D   
Sbjct: 554 LKPATCYAAEDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPAR 613

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+++S+E    +  LE   ++++G  FN+ SP+Q+G+ILF +L  P G KT +GQW+T A
Sbjct: 614 LRRLSSEFGLRMAELEAQAHEIAGRPFNVGSPRQIGEILFGELNLPGGKKTASGQWETGA 673

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +    + + + +L+WRQLSK+K TY D+L   ++ +T RVHT Y LA+  TGRLA
Sbjct: 674 ATLEGLAET-HALPRVLLDWRQLSKLKGTYTDALVAAMDPQTDRVHTSYQLAAATTGRLA 732

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T+ G++IR+AFI+     LISADYSQIELR+LAHI  I  L + F+  
Sbjct: 733 SSDPNLQNIPIRTETGRQIRQAFIAKDGHVLISADYSQIELRLLAHIGDIPELKRAFKAG 792

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A+E+FGV +  + P+ RR AK INF I+YGIS F LA QL I + EA  YIK 
Sbjct: 793 IDIHTATASEMFGVPVADMDPETRRRAKAINFGIVYGISAFGLANQLGIDQGEAGAYIKT 852

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI  Y++ T+  VR  G+V T+FGR+IH   I S   + R   ERAAINAPIQG
Sbjct: 853 YFERFPGIRTYMDATRAEVRSLGFVSTVFGRKIHIPAIASKSGAERQFGERAAINAPIQG 912

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI RRAMI +  +LE   L TKMLLQ+HDELVFE PE E+  A  +I   ME A  P
Sbjct: 913 AAADIIRRAMIRMPGALEAAGLETKMLLQVHDELVFEAPEAEVEAAIPLIKRIMEGAAEP 972

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            + L VPL V+ + + NW E +
Sbjct: 973 AVALSVPLVVDARAAKNWDEAH 994


>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
          Length = 928

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/985 (35%), Positives = 533/985 (54%), Gaps = 74/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    E      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRQFASER----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             + A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAHQASQKGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    E L+  + N   L+     L F   +N +         
Sbjct: 241 ENAMLSYELATIKLDVELEETPESLLKAEPNKDELVKLYGQLTFKSWLNELLEGG----- 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                S     +    + Q        +
Sbjct: 296 -------------------------------------SGSVEAVELAGSAQASASHAEME 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++ +    W+ KL+T    +F   TD +D   +  + ++ +  D+ 
Sbjct: 319 TSAVTIDRSQYETILDEETFNAWLDKLQTAELFAFDTETDNLDYMLANLVGLSFAV-DEG 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E+    K+G N+KYD  VL 
Sbjct: 378 IAAYVPVAHDYLDAPEQLDRD---------WVLEQLKPILEDAAKAKVGQNLKYDASVLA 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I ++G   D ML SY+ +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 429 RYDIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +  ++ L  VYE ++ P++ V+S++E TG+ ID+
Sbjct: 489 ELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDE 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 549 MKLSAQSVEITARLDELEKKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 609 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 668 LSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFR 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI G++IE+VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 728 DGKDIHAATAAEIMGLDIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 788 DKYFERYPGVMQYMEDTRSTAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 848 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL       +NW + +
Sbjct: 908 A----ELKVPLVAEAGHGDNWDQAH 928


>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
 gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
          Length = 911

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/987 (35%), Positives = 526/987 (53%), Gaps = 87/987 (8%)

Query: 1   MQKENH---LFLVDGSSFIYRAFYATPLLS--RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M KEN    + LVDGSS+++RA++  P L   R   G P  AI G  +ML KL    +K+
Sbjct: 1   MSKENRSAPVVLVDGSSYLFRAYH-VPNLKELRNSKGQPTGAIRGVISMLRKL----QKD 55

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              S    +FD     FR+E+Y DYKANRP +PE L  Q+  +    +A G+P + I+G 
Sbjct: 56  YPESQVVAVFDAKGKNFRHEMYSDYKANRPPMPEDLACQIEPLYDIVRAMGLPLLIIEGV 115

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADD+I T  + A  +G    I + DKD+ QLVSP   L +T+ +  +D E V++K+G+P
Sbjct: 116 EADDVIGTLAHEATTKGLDAVISTGDKDMAQLVSPHVTLVNTMTDTTMDREGVVEKFGVP 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE +V   AL GD++DNIPG+   G KTA   L E+G+L  ++  A  +K  K  EN+  
Sbjct: 176 PELIVDYLALIGDTVDNIPGVNKCGPKTAVKWLGEFGSLAQVIAQADEVKG-KIGENLRS 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E   LS++L  ++TDV +   LE +     +   L  +   LEF   I  +       
Sbjct: 235 SLEQLPLSKELATIKTDVELPFTLEEVHPNPVDTEALHKWFTELEFRTWIKDLD------ 288

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                               +S S  T+   +   P +      
Sbjct: 289 ------------------------------------ASTSSPTAATEASAPPAQS----- 307

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                   +   Y  +        W++ L    + SF   T +++   ++ + ++ +   
Sbjct: 308 --------DERDYQVVTEQDQFDHWIKALTDAKTFSFDTETTSLNYMEAEIVGVSFAVEP 359

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K      V   ++       +D         ++L+ LK   E+  + KIG N+KYD  V
Sbjct: 360 GK-AAYVPVAHDYMGAPEQLERD---------KVLAALKPLLEDPAYRKIGQNLKYDAHV 409

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPID 531
           L  +G+ + G   D ML SYVL+S  + HD+ ++A K L       ++I       +  +
Sbjct: 410 LANHGVQLNGIAEDTMLESYVLNSTANRHDMDTLASKHLGRETIHFEDIAGKGAKQLTFN 469

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590
           +IS  Q   +A E++++ LQL   L PKL  E  L  VY  ++ P++ V+ +ME  G  +
Sbjct: 470 QISLEQAGPYAAEDADITLQLHHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGALV 529

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L+  S E+++ +L LEE  Y+ +G+KFNL SPKQL +I + KL F    KT  GQ 
Sbjct: 530 DSQRLRTHSQELAERMLELEEEAYEKAGQKFNLGSPKQLQEIFYEKLGFDIIKKTPKGQP 589

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             TA+ + Q       + + +LE+R LSK+KSTY D LP  IN RT RVHT Y  A   T
Sbjct: 590 S-TAEPVLQELAEKYELPRVLLEYRGLSKLKSTYTDKLPEMINPRTGRVHTSYQQAVAAT 648

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AFI+P   KLISADYSQIELRI+AH++    L + 
Sbjct: 649 GRLSSSDPNLQNIPVRNEQGRRIRQAFIAPKGCKLISADYSQIELRIMAHLSGDEGLLKA 708

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LD+H+  AAE+F V  ++VS + RR AK INF +IYG+S F LA Q+ + RSEA  
Sbjct: 709 FSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAINFGLIYGMSAFGLARQIHVERSEAQS 768

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI +YF R+PG+  Y+ + +   +  GYVET+FGRR++  +I S   +++   ER AINA
Sbjct: 769 YIDKYFERYPGVLNYMNRIRAEAQDTGYVETLFGRRLYLPDIRSSNRNLQQAAERTAINA 828

Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI +RAM++V   LE D     KM++Q+HDEL+ EV E  +    + +   M 
Sbjct: 829 PMQGTAADIIKRAMLAVDAWLEGDSAPPAKMIMQVHDELILEVEESAVEAVKEKLTQIMS 888

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A     +L VPL V   V NNW E +
Sbjct: 889 SAA----DLNVPLLVEAGVGNNWDEAH 911


>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 930

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/989 (35%), Positives = 541/989 (54%), Gaps = 72/989 (7%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  EN L LVDGSS++YRAF+A P L+   +  P  A+ G  NML  L+   +     
Sbjct: 1   MAKIAENPLVLVDGSSYLYRAFHAFPPLTNSLN-EPTGAMYGVLNMLKSLISQVQ----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           SH AV+FD    TFR+EI+  YK++RP +PE L  Q+  +    +A GIP + ++G EAD
Sbjct: 56  SHIAVVFDAKGKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A + G  V I + DKD+ QLV     L +T+    +D E V++K+G+PPE 
Sbjct: 116 DVIGTLAVQASRAGKKVLISTGDKDMAQLVDENIMLINTMTNTLLDREGVLEKYGLPPEL 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRREN 232
           ++   AL GDS DNIPGIPG+G KTA  LLQ  G++  I  N  ++        K     
Sbjct: 176 IIDYLALMGDSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + E  + A LS  L  ++TDV + +  E L     N   LI +    EF + +N V    
Sbjct: 236 LAEAKDLADLSYLLATIKTDVALDVSPEQLTFGVANKDALIEYFARYEFKRWLNEVMNGG 295

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           +    N     + IN                                    + TP     
Sbjct: 296 ESSVTNGSEQAVKINPY----------------------------------QATPSTNER 321

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E         I+   Y  ++   ++++W+ KL      +    TD++D   +  + ++ +
Sbjct: 322 ENT---VSVQIDRSQYQCLLELSELKRWIDKLNQAKCIAIDTETDSLDYMVAHLVGVSFA 378

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            L+  +     +   ++            +    +  LS LK   EN    K+G NIKYD
Sbjct: 379 -LENGEAAYLPLRHDYLGAP---------QQVDFQTALSLLKPVLENPEIHKVGQNIKYD 428

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
             +  R+GI ++G   D ML+SYVLDS    H++  +A+++L +     ++I    K+ +
Sbjct: 429 LSIFARHGIEVQGVSYDTMLLSYVLDST-GRHNMDELAKRYLGHQTIHFEDIAGKGKAQL 487

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++I   Q  E+A E++++ ++L  +L  K+  + +L+ +Y+ ++ P+  V+S++E  G
Sbjct: 488 TFNQIPLEQAAEYAAEDADITMKLQQVLWEKVAAQPELVKLYQTMELPLASVLSRIERHG 547

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID D L   S +I   L +LE+  Y+L+G++FNL+S KQL +ILF KL  P   KT  
Sbjct: 548 VLIDSDALFSQSQQIGVRLTALEQQAYELAGQQFNLASTKQLQEILFDKLSLPVLKKTPK 607

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   ++ + K ++E R LSK+KSTY D LP  +NK T RVHT Y  A 
Sbjct: 608 GAPSTNEEVLEEL-AYEHALPKILVEHRGLSKLKSTYTDKLPLMVNKDTGRVHTSYHQAV 666

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIPI+ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L
Sbjct: 667 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAHLSQDKGL 726

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAEIFG+ + +VS + RR AK INF +IYG+S F L+ QL IPR E
Sbjct: 727 INAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIYGMSSFGLSRQLGIPRHE 786

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  Y+  YF R+PG+  ++   +   +  GYV T+F RR++  +I S  +  R   ER A
Sbjct: 787 AQKYMDLYFQRYPGVQAFMHDIRETAKAQGYVTTLFDRRLYLPDIQSSNAIRRKAAERVA 846

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAMI++ + +   +   KM++Q+HDELVFEV  ++I     II  +
Sbjct: 847 INAPMQGTAADIIKRAMITLDREIA-GQPDIKMIMQVHDELVFEVRTDKIEHFRTIIKTT 905

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME+A      L VPL V++ V  NW E +
Sbjct: 906 MEQAA----QLVVPLIVDVGVGKNWDEAH 930


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
          Length = 1047

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1033 (40%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ        
Sbjct: 16   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E+  +EAD
Sbjct: 76   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY   AE  G  V I+S+DKDLMQLVS     YD             E  +D E +
Sbjct: 136  DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L  AS IKQ 
Sbjct: 196  IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 255

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 256  KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315

Query: 288  VATTYDCDAANIEPVVL------------------------DINTTENKGIAIETEIDRD 323
            +A     D   ++P                           D    + +  A     D +
Sbjct: 316  IAQMLHVDPEAVKPDPSLLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375

Query: 324  TTIKTSQFSSLSDQTSKINS--------EQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D      +        E TP  L   R  + S  P +  +Y  I    
Sbjct: 376  APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 435  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494

Query: 432  -----SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                 +   + D           L  LK   E+   LK+G N+KYD  VLHRYGI +R F
Sbjct: 495  FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVRPF 554

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +      ++  + ++ +  D+++  +   +A 
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 615  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GE+F +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 675  QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL +RQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 735  GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  +DIH   A+
Sbjct: 795  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 855  AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 915  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +LE  KL  +MLLQ+HDELVFEVP++E+     +I   ME+A  P + LRVPL 
Sbjct: 975  MTRMEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034

Query: 964  VNIKVSNNWQEEN 976
            V  + + NW+E +
Sbjct: 1035 VEARAAGNWEEAH 1047


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1033 (40%), Positives = 610/1033 (59%), Gaps = 61/1033 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ        
Sbjct: 16   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E+  +EAD
Sbjct: 76   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY   AE  G  V I+S+DKDLMQLVS     YD             E  +D E +
Sbjct: 136  DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L  AS IKQ 
Sbjct: 196  IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 255

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 256  KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315

Query: 288  VATTYDCDAANIEPVVL------------------------DINTTENKGIAIETEIDRD 323
            +A     D   ++P                           D    + +  A     D +
Sbjct: 316  IAQMLHVDPEAVKPDPALLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375

Query: 324  TTIKTSQFSSLSDQTSKINS--------EQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D      +        E TP  L   R  + S  P +  +Y  I    
Sbjct: 376  APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 435  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494

Query: 432  -----SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                 +   + D           L  LK   E+   LK+G N+KYD  VLHRYGI +R F
Sbjct: 495  FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVRPF 554

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +      ++  + ++ +  D+++  +   +A 
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 615  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GE+F +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 675  QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL +RQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 735  GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  +DIH   A+
Sbjct: 795  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 855  AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 915  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +LE  KL  +MLLQ+HDELVFEVP++E+     +I   ME+A  P + LRVPL 
Sbjct: 975  MTRMEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034

Query: 964  VNIKVSNNWQEEN 976
            V  + + NW+E +
Sbjct: 1035 VEARAAGNWEEAH 1047


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/998 (35%), Positives = 544/998 (54%), Gaps = 71/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLALKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDANPVTQ 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N E  +                         + + + +     + +EQT           
Sbjct: 301 NSEEKI------------------------PNNYQATASVPQAVETEQT----------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            ++  I+   Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 326 FAKVEIDRSRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFL 463
              +         +E    DL    ++       +   K       L+ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +   +G+ + G   D ML SY L+S    H++  +A ++L +     +E
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNST-GRHNMDELADRYLGHKTIEFEE 504

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMID 578
           I    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P+++
Sbjct: 505 IAGKGKNQLTFDKIAIDVASKYAAEDADVTMKLHQVLTPELDKTPTLVKLFNEIEMPLVE 564

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFTKL 
Sbjct: 565 VLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFTKLG 624

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN++T R
Sbjct: 625 LPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGR 684

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI+
Sbjct: 685 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIM 744

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F L+
Sbjct: 745 AHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLS 804

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S  + 
Sbjct: 805 NQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAM 864

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE + 
Sbjct: 865 RRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEELVE 923

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             SQ+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 924 HYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDEAH 957


>gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301]
 gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301]
          Length = 928

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/983 (36%), Positives = 534/983 (54%), Gaps = 67/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L    +  P  AI G  NML +L     K+  + + A +
Sbjct: 2   KTLLLVDGSSYLYRAFHAMPDLRNSQN-EPTGAIQGVLNMLRRL----HKDYPSDYSACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++IY +YKANR  +P+ L  Q+  +  A +A G P I   G EADD+I   
Sbjct: 57  FDAKGKTFRDDIYAEYKANRASMPDDLRLQIEPLHEAIKAMGWPLIVESGVEADDVIGAL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
              AE+EG    I + DKD+ QLV+    + +T+++      + +DI  V  K+GIPP  
Sbjct: 117 AKQAEREGIRTIISTGDKDISQLVNEHITVVNTMRDAFRRTDDVLDIAGVENKFGIPPSL 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           MV    L GD+ DN+PG+  +G KTA   L+EYG+L+NI+ NA +I   K  EN+     
Sbjct: 177 MVDYLVLIGDTSDNVPGVEKVGPKTAVKWLKEYGSLDNIVANADKITG-KVGENLRAALG 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               +R+L+ +R DV I   L  L  +  +  +L       EF      +    D     
Sbjct: 236 WLPTARELITIRCDVGIQENLSDLSPQTIDKAKLAELFDRFEFKSWRRELENMQD----- 290

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                   +  + TS   +    TS+I   QT     + +    
Sbjct: 291 ------------------------NAPVPTSGNVTAKFPTSQIQPTQTADMFAVTQFTAN 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +       ++  I+  + +  W+ KL+T     F   T ++D   +K + ++ S      
Sbjct: 327 TS-----RNFETILTNQQLDTWLAKLQTAKLMCFDTETTSLDPMTAKIVGMSFSVEAGS- 380

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  + D           +     E L+ +K   EN    K+G N KYD+ VL  
Sbjct: 381 AAYLPLKHDYFDAP---------EQLDFVETLAKIKPILENAAIKKVGQNFKYDQHVLAN 431

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI++ G   D ML SYV +S ++ H + ++A++ L       +E+       +  ++++
Sbjct: 432 HGIALNGIAHDTMLESYVFESHKT-HGMDALAERHLGIQTISFEEVAGKGAKQVTFNQVT 490

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                E+A E++++ LQL   + P++  + KL  +Y +++ P   ++  +E  G+ ID+D
Sbjct: 491 VEVASEYAAEDADITLQLHQAMYPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLIDRD 550

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L   S EI   L++LE   Y+L+G+ FNL SPKQL +ILF KL      KT +G    T
Sbjct: 551 MLNIQSNEIGAKLVALENQAYELAGQPFNLGSPKQLQEILFDKLGIKPTKKTPSGAPS-T 609

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +D+ Q    D+P+ K +LE+R L+K+KSTY D LP  IN +T RVHT Y+ A  +TGRL
Sbjct: 610 DEDVLQELALDHPLPKVLLEYRGLAKLKSTYTDKLPKMINAQTGRVHTSYNQAVAITGRL 669

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP+++  G++IR AFI+P    ++SADYSQIELRI+AH++K   +   F N
Sbjct: 670 ASSDPNLQNIPVRSAEGRRIREAFIAPKGSHIVSADYSQIELRIMAHLSKDEGMLAAFAN 729

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIHR  AAEIFGV  E V  + RR+AK INF +IYG+S F LA  L I R  AA YI+
Sbjct: 730 NEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMSAFGLAQNLNIERGAAASYIE 789

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ EY++ T+   +Q GYVET FGRR+   EINSP  + R   ERAAINAP+Q
Sbjct: 790 RYFARYPGVREYMQNTREIAKQKGYVETYFGRRLWVPEINSPNGTRRAGAERAAINAPMQ 849

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + AMI+V K L   KL TK+++Q+HDELV EVP+ E+    Q +   M+    
Sbjct: 850 GTAADLIKLAMIAVDKWLRHEKLQTKLIMQVHDELVLEVPDNELELVKQKLPELMQNVA- 908

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL   + V +NW+  +
Sbjct: 909 ---KLDVPLLAEVGVGSNWESAH 928


>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
 gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
          Length = 911

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/981 (35%), Positives = 536/981 (54%), Gaps = 75/981 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVD S +++RA++A P L+    G P  A+ G  NML KL+++ R E    +
Sbjct: 1   MIPQYPLILVDASGYLFRAYHALPKLTNSR-GEPTGALVGVLNMLRKLIEDHRPE----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD     FR++ YPDYKANRP +PE L  Q+  +R   +A G+P + + G EADD+
Sbjct: 56  IGVVFDAGGRGFRHDRYPDYKANRPAMPEDLRAQIEPLRTIIRAMGLPLLVVPGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A   G    I + DKDL QLV     L +T+   ++D + V +K+G+PPE++V
Sbjct: 116 IGTLATQAAATGLPTLISTGDKDLAQLVGEHVTLINTMTGTRLDPDGVREKFGVPPERIV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GDS+DN+PG+P  G KTAA  + EYG+L+ ++  A  IK  K  E++    +  
Sbjct: 176 DYLALMGDSVDNVPGVPKCGPKTAAKWIAEYGDLDGVMAQAGTIKG-KIGESLRAVLDQL 234

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L+R L  ++ DV + +    L     +   L ++ + LE  +L+  +            
Sbjct: 235 PLARDLTTIKRDVALDLGPTDLRPTPPDVETLRNWYERLESRRLLATL------------ 282

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                             +        T+  S  ++ +++  +   PQ            
Sbjct: 283 ------------------DGVGVAGAPTAARSHEAEHSTESEAGTEPQ------------ 312

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I+    ++ W+ +L+T    +F   T  +DA  ++ + ++ +    +   
Sbjct: 313 -------YELILTEAALEDWLSRLQTADLFAFDTETTALDAMQAELVGVSFALEPGR--- 362

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L+                +L+ LK   E+    K+G N+KYD  VL RY 
Sbjct: 363 -----AAYVPLAH--VYPGAPDQLDRDRVLARLKPLLEDPGRPKVGQNLKYDMSVLARYD 415

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I++RG   D +L SYVLDS    HD+ S+A+++L +     +++       I  D++   
Sbjct: 416 IALRGIAHDTLLESYVLDSTA-RHDLDSLAKRFLDHDTIRFEDVAGKGAKQIGFDQVPLE 474

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           Q   +A E++ V L+L  + +P+L     L  +Y  ++ P++ V+S++E  G+ ID   L
Sbjct: 475 QAGPYAAEDAEVTLRLHRVFQPRLAAVPALERLYREIEMPLVPVLSRLERAGVLIDSARL 534

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              SAE+++ +L LEE+ Y ++G +FNL SPKQ+G I F +L  P  AKT  G   T+  
Sbjct: 535 ATQSAELARKILELEESAYRVAGRRFNLGSPKQIGAIFFDELGLPVVAKTPKGAPSTSED 594

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    + + + IL+ R LSK++STY D LP  +++ T RVHT Y  A T TGRL+S
Sbjct: 595 VLERLAAEGHELPRIILDHRGLSKLRSTYTDKLPRMVDRDTGRVHTSYHQAVTATGRLSS 654

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G++IRRAFI+    +L++ADYSQIELRI+AH++    L   F    
Sbjct: 655 SDPNLQNIPIRTEEGRRIRRAFIAASGHRLLAADYSQIELRIMAHLSGDERLLAAFAGGQ 714

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAEI G+  E V+ + RR AK INF +IYG+S F LA QL I R  A +Y+ RY
Sbjct: 715 DIHRATAAEILGLAPEDVTGEQRRSAKAINFGLIYGMSAFGLARQLGIERGAAQEYVDRY 774

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ +++++T+  VR++GYVET+FGRR+H  EI     + R   ER AINAP+QG+
Sbjct: 775 FERYPGVRDFMDRTRRQVREDGYVETLFGRRLHLPEIGHGNQARRAAAERTAINAPMQGT 834

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI+V   +E  + A +++LQ+HDELV EV E  +      +  +ME A    
Sbjct: 835 AADIIKRAMIAVDAWIEAEQPAARLILQVHDELVLEVAESAVEETRARVCAAMETAA--- 891

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L VPL V+I    NW + +
Sbjct: 892 -ELAVPLVVDIGEGANWDDAH 911


>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1043

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1014 (42%), Positives = 601/1014 (59%), Gaps = 39/1014 (3%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            +  + +FLVDGSSF++RA++ +     K     D LP  A+  FC  L++ ++    +  
Sbjct: 30   EAGDRVFLVDGSSFVFRAYFQSIRQDAKYNYRSDRLPTGAVRLFCTKLFQFIREGAADLK 89

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +H A+IFD    +FR EIYP YK+NR + PE L+PQ PL+R + +AFG+  +E   +EA
Sbjct: 90   PTHLAIIFDKSENSFRKEIYPPYKSNRSEPPEDLIPQFPLMRASVRAFGLQPVEQDRYEA 149

Query: 118  DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----------KIDIEH 167
            DD+IATY   A   G  V IIS DKDLMQL+ P   +YD    E          +I  E 
Sbjct: 150  DDLIATYATQAHALGAEVLIISADKDLMQLIGPGVSMYDPASGEAGAKGARQERRIGQEE 209

Query: 168  VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            V+  +G+ P+K++ +QAL GDS DN+PG  GIG KTAA L+ +YG+L+N+L  A  IKQ 
Sbjct: 210  VVAYFGVGPDKVIDVQALAGDSTDNVPGARGIGIKTAAQLINDYGDLDNLLKLAREIKQP 269

Query: 228  KRRENILE--YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            KRRE + E        +SRKLV L  DVP+ IPL  L L      +L+++LKALEFT L 
Sbjct: 270  KRREILTEPESVGLIEISRKLVTLVRDVPVEIPLADLGLHAPEPHKLVAYLKALEFTTLT 329

Query: 286  NRVATTYDCDAANIEPVVLDINTTENKG----IAIETEIDRDTTIKTSQFSSLSDQTSKI 341
             RVA  Y  D A +EP          +G    + +E E            +  S + +  
Sbjct: 330  KRVAEAYGVDLAAVEPDPAFCGAAGWRGRNGEVLVEAEPKAGEGATEPAGAEASGEVATR 389

Query: 342  NSEQT----------------PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
            +  +                 P      R  +       + +Y  IV  + +   +    
Sbjct: 390  SGPKRNARYGEPVEKAALGSGPGLFASARAAEGRAGTFEHSAYQTIVTLEALDAVIAAAY 449

Query: 386  TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
              G  +    T ++D   +    +++     K        T      +   +        
Sbjct: 450  EAGLLAIDTETTSLDPMLADLAGLSLCAEPGKAFYVPVGHTSGEGQDLFEGKGLLPGQLP 509

Query: 446  TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDI 505
               +L  LK   E+   LKIG N+KYD +VL ++G+ MR  +D +L+SYVLD+G + H +
Sbjct: 510  IGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQHGVEMRPLDDTLLLSYVLDAGLTDHGM 569

Query: 506  ASIAQKWLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
              +++K L +       +  S ++ I   +++  +  E+A E+++V L+LW +L+P+L  
Sbjct: 570  DVLSEKHLGHKPIPFSAVAGSGRTFIGFARVAIDKATEYAAEDADVTLRLWRVLKPRLPA 629

Query: 563  EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            EK+  VYE L++PMIDV+++ME  G+ ID  LL ++S++ ++++   E  IY+L+GEKFN
Sbjct: 630  EKMTTVYETLERPMIDVLARMERRGVAIDPPLLGRLSSDFAQDMARYEAEIYELAGEKFN 689

Query: 623  LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
            L SPKQLGDILF KL  P   KT TG W T A  LE +      +   IL+WRQL+K+KS
Sbjct: 690  LGSPKQLGDILFGKLGLPGAKKTATGAWSTAAGVLEDLAEQGVDLAARILDWRQLAKLKS 749

Query: 683  TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
            TY D+LPN+IN  + RVHT Y+LA+T TGRL+S EPNLQNIP++ + G+KIRRAFI+PP 
Sbjct: 750  TYTDALPNYINPSSGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRRAFIAPPG 809

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            +KL+SADYSQIELR+LAHIA I  L   F  +LDIH M A+E+FGV +E +  ++RR AK
Sbjct: 810  RKLVSADYSQIELRLLAHIADIKSLKNAFAENLDIHAMTASEMFGVPVEGMPSEIRRRAK 869

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             INF IIYGIS F LA QL IPR EAA YIK+YF RFPGI  Y++ TK   R+NGYVETI
Sbjct: 870  AINFGIIYGISAFGLANQLAIPREEAAAYIKKYFERFPGIRAYMDDTKKKARENGYVETI 929

Query: 863  FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            FGR+ HY  I +   S R +NERAAINAPIQGSAADI RRAMI +  +L   KL+ +MLL
Sbjct: 930  FGRKCHYPRIKASNPSERALNERAAINAPIQGSAADIIRRAMIHMEAALAAEKLSAQMLL 989

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            Q+HDEL+FEVP++E+     ++   M +A LP ++L VPL+V+ K + NW E +
Sbjct: 990  QVHDELIFEVPDDEVEATIAVVRKIMVEAPLPAVHLSVPLQVDAKAAQNWDEAH 1043


>gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
 gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
          Length = 987

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/982 (39%), Positives = 584/982 (59%), Gaps = 42/982 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVDGS FI+RA++A P L+R  DG PVNA+ GF NML KLL   + E+     AVIFD
Sbjct: 36  LYLVDGSGFIFRAYHALPPLNR-PDGTPVNAVLGFTNMLMKLLAELKAEA----VAVIFD 90

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              + FRNE YPDYKANRP+ PE L PQ  ++R A  AF +P +E++G+EADD+IATY  
Sbjct: 91  AKRLNFRNEFYPDYKANRPEPPEDLRPQFAIIREAVDAFCLPCLELEGYEADDLIATYAR 150

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +A ++G  VT++S+DKDLMQLV     L D +K   I  E V +K+G+PPEK+V +QAL 
Sbjct: 151 LAREQGRPVTVVSSDKDLMQLVRDGVRLMDPMKGRLIGPEEVAEKFGVPPEKVVDVQALA 210

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS+DN+PG+PGIG KTAA L+ EYG+LE +L  A  I+Q  RR+ +LE AE AR+S++L
Sbjct: 211 GDSVDNVPGVPGIGVKTAAQLITEYGDLETLLERAGEIRQAGRRQKLLENAELARISKRL 270

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V L   VP+ +PL+ L + + +  +LI +LK   F  +I++V      D       ++D 
Sbjct: 271 VRLDDAVPVPVPLDRLRVREPDHHKLIDWLKVQGFRSVIHKVEAELAADG-----TLVDG 325

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                         D  T + +  ++  +                 E             
Sbjct: 326 AAPAPAPAGRAPRTDVRTALDSRSYAPAATPVP-------------EARDDGVAPQPERV 372

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK--------- 417
            Y  + +   + +W+++    G+ +    TD +    +  + I++S    +         
Sbjct: 373 EYELVQDLDALDRWIERAREAGTVAVDTETDGLTPVSAGLVGISLSVEPGRACYIPVQHI 432

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           D  + K  T  +DL                + L+ LK   E+   LK+G N+K+D  +  
Sbjct: 433 DPATPKGATGGLDLG---GTPPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIFA 489

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           R+GI+M   +D ML+SYVL +G   H +  +A + L +      E+  + KS I  D++ 
Sbjct: 490 RHGIAMAPIDDTMLISYVLGTGLHGHGMDELALRHLGHTTIKYDEVTGTGKSRITFDRVP 549

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             + +++A E++++ L+L  +L+  L+ + ++ +YE +++P++ VV++ME  G+ +D+ +
Sbjct: 550 LDKARDYAAEDADITLRLHRVLKHDLVRQHMVTLYETVERPLVPVVARMESRGVLVDRAV 609

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+Q+S++ ++ +L +E  I  L+   FN+ SPKQLG+ILF ++K P G+K K+G W T +
Sbjct: 610 LRQMSSDFAQRMLEMEAEIQKLAPRAFNVGSPKQLGEILFDEMKLPGGSKGKSGAWGTDS 669

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +      I + +L+WRQL+K+KSTY D+L   I+ RT RVHT ++LA+T TGRL+
Sbjct: 670 GVLEGLAEQGVEIAQKVLDWRQLAKLKSTYTDALAEQIDARTGRVHTSFALAATATGRLS 729

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T+ G+KIRRAF++ P   L+S DYSQIELR++A +A +  L + F + 
Sbjct: 730 STDPNLQNIPIRTEEGRKIRRAFVARPGHLLLSVDYSQIELRLVAEMAGVPALRRAFHDG 789

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH M A+++FGV +++++ ++RR AK INF IIYGIS F L  QL I   EA  +I++
Sbjct: 790 IDIHAMTASQVFGVPLDQMTSEIRRKAKAINFGIIYGISGFGLGRQLGITPGEAGAFIRQ 849

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFP +  Y+E TK F R++GYV T+ GRR     I     + R   ER AINAPIQG
Sbjct: 850 YFERFPELQTYMETTKAFAREHGYVTTLLGRRCWIQGIREKAPARRAYAERQAINAPIQG 909

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI +RAM  +  +L   KL   MLLQ+HDEL+FEVPE ++   + ++   ME A   
Sbjct: 910 TAADIIKRAMARIEPALAAAKLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVMEGAAG- 968

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL      + NW E +
Sbjct: 969 ---LGVPLVAEAGWAPNWAEAH 987


>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
 gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
          Length = 901

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/981 (35%), Positives = 541/981 (55%), Gaps = 85/981 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L L+DGSS+++RAF+A P L+    G P  AI G  NML KLL   + +    +
Sbjct: 1   MAQNPVLILIDGSSYLFRAFHALPSLTTSK-GQPTGAIYGVINMLRKLLDEYQPQ----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR+E++  YKA+RP +PE L  Q+  +    +A G+P + ++G EADD+
Sbjct: 56  IAVVFDAKGKTFRHELFEQYKAHRPPMPEELACQIQPLHDLIRALGLPLLCMKGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +     I S DKDL QLV+P   L +T+   K+D   V  K+ + PE++V
Sbjct: 116 IGTLARQATAQRLETLISSGDKDLAQLVNPHVNLVNTMNLSKLDPAGVKAKFNVSPEQIV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD++DNIPGIPG+G KTAA LL +Y +L+ I+  AS IK  K  EN+  +    
Sbjct: 176 DYLALVGDTVDNIPGIPGVGPKTAAKLLCQYHSLDQIMAYASDIKG-KMGENLRSHLPQL 234

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L+++L  +R DV +    + L     N   L                            
Sbjct: 235 PLAKQLATIRQDVSLDWSPKELQRAPPNISALR--------------------------- 267

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                             E+      K+     L ++ S  ++                 
Sbjct: 268 ------------------ELYAALEFKSWLRELLDNENSHASTPHPSTNPA--------- 300

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  + + + ++ W+ +L+T    +F + T+++D   ++ + ++ +    +   
Sbjct: 301 -----PAYETVFSEESLEHWIARLKTTELFAFDLETNSLDYMEAEIVGLSFAIQPHE--- 352

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                 ++I L    +  +       +++L+ LK   E+    K+G N+K+D+ VL  YG
Sbjct: 353 -----AMYIPLGHEDA--TAPPQLPREQVLARLKPLLEDPRHGKVGQNLKFDRNVLANYG 405

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           I ++G   D ML SYVLDS  + H++ S+A K+L     T + +       +P ++++  
Sbjct: 406 IELQGIHHDSMLESYVLDSTATRHNMDSLALKYLQRTTITYEMVAGKGSKQLPFNQVTIE 465

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E++++ LQL     P++  E+ L  +Y+ L+ P+I V+S+ME  G+Q+D   L
Sbjct: 466 KAAPYAAEDADISLQLHRYFWPRIQQEESLRRLYQELEIPLIPVLSRMERNGVQVDTTQL 525

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K  S E++  L  LE+  +DL+GE FNL+SPKQ+  IL+ KLK P   KT TGQ  T   
Sbjct: 526 KTQSDELAARLKKLEQEAFDLAGESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAET 585

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++   D P+ + +L++R LSK+KSTY D LP  +N  T RVHT Y  A T TGRL+S
Sbjct: 586 VLQELAL-DYPLPQRLLQYRTLSKLKSTYTDRLPLQVNPHTGRVHTSYHQAVTATGRLSS 644

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T  G++IR+ FI+PP  +L++ADYSQIELRI+AH+++   L   FE   
Sbjct: 645 SDPNLQNIPIRTAEGRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEE 704

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH+  A E+F   +E+V+P+ RR AK INF +IYG+S   L  QL I R+ A  YI+RY
Sbjct: 705 DIHQRTATEVFRTPLEEVTPEQRRSAKAINFGLIYGMSAHGLGRQLGINRTAAQHYIERY 764

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+  Y++      RQ GYVET+FGRR++  +I+S ++  RN  ER AINAP+QGS
Sbjct: 765 FQRYPGVKAYMDNICQQARQKGYVETLFGRRLYLPDIHSRQTQRRNQAERTAINAPMQGS 824

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI     L+ +    +M++Q+HDELVFEV E+++    + I  +M  A    
Sbjct: 825 AADIIKRAMIHTDGWLQKNSDNARMIMQVHDELVFEVAEDKLEITMRAIRENMTAAA--- 881

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L++PL V I    NW E +
Sbjct: 882 -QLKIPLIVEIGSGANWDEAH 901


>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
 gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
          Length = 954

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/998 (35%), Positives = 538/998 (53%), Gaps = 74/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K  G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNKQ-GEPTGAMYGVLNMLKSLIAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLLSIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQASQAGKHVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G+++ I  N  ++        K     +    
Sbjct: 181 ALLGDSSDNIPGVKGVGEKTAIALLQGIGSMQAIYANLDKVAELSFRGAKTFAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           ETA LS  L  ++TDV + +  + LI +     +L+      EF + +N V         
Sbjct: 241 ETADLSYLLATIKTDVALDVTYDQLITQPQQRDQLVELFGRYEFKRWLNEVMN------- 293

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                          +  +  S +    N + T      ++   
Sbjct: 294 -----------------------------DANPVTQTSAEKIPNNYQATQAVSSEQKSAP 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             +  I+  +Y  + + +   +W+ KL+     +    TD +DA  +  + I+   L+  
Sbjct: 325 FVKISIDRTAYDCVNSPELFTKWLAKLQMAELVAVDTETDNLDAMQANLVGISF-GLENG 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK--------------NTLTKEILSYLKKFFENEHFL 463
           +     +      ++  T  D  G+                   + L+ LK   EN +  
Sbjct: 384 EACYIPLAHKGK-IAQPTQVDLFGESEAELDEVEALLPNQLNKADCLAQLKPILENPNIR 442

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +  RYGI ++G   D ML SY LDS    H++ ++A+++L +     +E
Sbjct: 443 KIGQNIKYDLTIFARYGIELQGVAFDTMLQSYTLDST-GRHNMDNLAERYLGHQTIPFEE 501

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMID 578
           +    K  +  D+I   +  E+A E++ + ++L  LL  +L    +L+ ++E+++ P++ 
Sbjct: 502 LAGKGKHQLTFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQIEMPLVS 561

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID   L   S EI + L  LE  ++  +GE FNL+S KQL +ILF KL 
Sbjct: 562 VLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEAGEVFNLASTKQLQEILFNKLG 621

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + LE++    + +   ++E R LSK+KSTY D LP  IN +T R
Sbjct: 622 LPILKKTPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQMINAQTGR 681

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+
Sbjct: 682 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIELRIM 741

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    + + F    DIHR  AAEIFGV +E V+ + RR AK INF +IYG+S F LA
Sbjct: 742 AHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYGMSEFGLA 801

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A  Y++ YF R+P + +++   +    + GYVET+FGRR++  EINS    
Sbjct: 802 NQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAAEKGYVETLFGRRLYLPEINSSNQM 861

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMI + +++ + +    M++Q+HDELVFEV  + + 
Sbjct: 862 RRKAAERVAINAPMQGTAADIIKVAMIGIDQAVRNCE-DIAMIMQVHDELVFEVKADRVE 920

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +Q+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 921 HYTQLIKAEMEKA----IELKVPLIAEVGVGSNWDEAH 954


>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
 gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
          Length = 937

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/983 (34%), Positives = 539/983 (54%), Gaps = 56/983 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 3   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A IFD    TFR+++YP YK +R  +P+ L  Q+  +  A +A G P + I+G EADD+I
Sbjct: 58  ACIFDAKGKTFRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVIEGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPE++V 
Sbjct: 118 GTLAERAAREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L E+G+L+N++  A  IK     EN+    E   
Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLTEFGSLDNVIARAGEIKG-VVGENLRNTLEWLP 236

Query: 242 LSRKLVMLRTDVPIT---IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++ D  ++      + LI    +  +L+ F     F   +           A+
Sbjct: 237 KGRELLTVKLDCDLSKEVPTFDALIDGGEDKSKLVDFFSRYGFKTWLRE---------AS 287

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E +    +    +  A   +       +    ++L D  +                   
Sbjct: 288 GEALPDTRSVGAARKAATPVKNYAGEAAQLQAQANLFDVEAPP----------------- 330

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +   Y  +     ++ W+Q+L+ +        T ++D   ++ + I++S     +
Sbjct: 331 -----DEIKYETVTTEAQLESWMQRLDEVDLVCIDTETTSIDPMLAQLVGISLSVKPG-E 384

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D++   +            +L+ +K + E+E   K+G ++KYD  V   
Sbjct: 385 ACYIPVAHRGPDVAGLDA----AAQLSRDTVLARMKLWLEDESRKKVGQHLKYDAHVFAN 440

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           + I++RG   D ML SYVL+S R+ H + ++A++ L     T + +     S I  D++ 
Sbjct: 441 HDIALRGIEHDTMLESYVLESHRN-HGMDALAERVLHLKTITYEAVCGKGASQIGFDEVP 499

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +   +A E+++V L+L   L PK+  + KL +VYE+++ P   V+ +ME  G+ ID D
Sbjct: 500 LDRATAYAAEDADVTLRLHRTLFPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAD 559

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S E+   L+ LE   + L+G+ FNL SPKQ+GDI F ++K P   KT +G   T 
Sbjct: 560 RLAKQSNELGLRLIELEAEAHKLAGQPFNLGSPKQIGDIFFNQMKLPVIKKTASGAPSTD 619

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +L++R L+K+KSTY D LP  +N RT RVHT Y  A+ +TGRL
Sbjct: 620 EEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAVTGRL 678

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T+ G++IR AFI+P    ++SADYSQIELRI+AH+++   L + F  
Sbjct: 679 ASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMRAFRE 738

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+F V   +V+P  RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 739 GQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAFGLASNLGIGRDAAKLYID 798

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG   Y+E+T+   R++GYVET+FGRR+   +IN      R   ERAAINAP+Q
Sbjct: 799 RYFARYPGAANYMEETRQSAREHGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQ 858

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +M++V   LE   + +++++Q+HDELV EVP++E+    + +   M     
Sbjct: 859 GTAADLIKLSMLAVQGWLEAEAMRSRLVMQVHDELVLEVPQDELAVVRERLPELMCSVA- 917

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL   + V  NW+E +
Sbjct: 918 ---TLRVPLVAEVGVGANWEEAH 937


>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
 gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
          Length = 928

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/985 (36%), Positives = 532/985 (54%), Gaps = 74/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    E      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRQFASER----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQKGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAGLGFRGSKTMAKKLIDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ DV +    E L+  + N   L+     L F   +N +         
Sbjct: 241 ENAMLSYELATIKLDVELEETPESLLKAEPNKDELVKLYGQLTFKSWLNELLEGG----- 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                S     +    + Q    +   +
Sbjct: 296 -------------------------------------SGSVEAVELAGSSQASSSQAEME 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   I+   Y  I++ +    W+ KL+T    +F   TD +D   +  + ++ +  D+ 
Sbjct: 319 TSAVTIDRSQYETILDKETFNAWLDKLQTAELFAFDTETDNLDYMLANLVGLSFAV-DEG 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D      +D          +L  LK   E+    K+G N+KYD  VL 
Sbjct: 378 IAAYVPVAHDYLDAPEQLDRD---------WVLEQLKPILEDAAKAKVGQNLKYDASVLA 428

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I ++G   D ML SY+ +S    HD+ S+A ++L ++    ++I    K+ +  ++I
Sbjct: 429 RYDIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E+++V L+L   L   +  ++ L  VYE ++ P++ V+S++E TG+ ID+
Sbjct: 489 ELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDE 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L   S EI+  L  LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T
Sbjct: 549 MKLSAQSVEITARLDELEKKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+ K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGR
Sbjct: 609 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F 
Sbjct: 668 LSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFR 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+
Sbjct: 728 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+
Sbjct: 788 DTYFERYPGVMQYMEDTRSTAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V + +++      K+L+Q+HDELVFEV E  ++     +   ME A
Sbjct: 848 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL       +NW + +
Sbjct: 908 A----ELKVPLVAEAGHGDNWDQAH 928


>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
 gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
          Length = 914

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/979 (36%), Positives = 532/979 (54%), Gaps = 71/979 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             N L LVDGSS++YRA++A P LS    G+   A+ G  NML  L    R +    + A
Sbjct: 2   NNNTLILVDGSSYLYRAYHAMPSLSNSQ-GMLTGAVYGVTNMLKSL----RADYQPIYVA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           ++FD     FR+E+YPDYK NRP +PE L+ Q+       +A G P +   G EADD+I 
Sbjct: 57  IVFDAKGKKFRHELYPDYKKNRPPMPEELVVQISSTHDMVRALGFPLLMENGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE  G    I S DKD  QLV+ +  L +T+K  ++D+E V +K+GIPP  +V  
Sbjct: 117 TLAKQAEAVGMQTLIFSNDKDFAQLVNESITLINTMKNTRLDVEGVTEKFGIPPALIVDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD  DNIPG+  IG KTA  LL+ YG+LE I+ N  +IK  K  +N+ E      L
Sbjct: 177 LSLIGDKSDNIPGVKTIGPKTAIKLLKNYGSLEAIIENIPQIKG-KVADNLREALSYLPL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +R+L+M++ DVP+    + L L   +  +L      L F K +  + T+ D   ++    
Sbjct: 236 TRQLLMIKCDVPLLNTPQQLKLTTPDVDKLRELYTKLAFKKWLAELNTSPDSSISS---- 291

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                              R   I  S+ +S                          +  
Sbjct: 292 ------------------FRKEGISHSEDASFEG----------------------VEGG 311

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++  Y  I+   D+  W+ +L      +F   T ++D   ++ + ++ +    +     
Sbjct: 312 TSHPKYHTILTQADLDDWLNRLNQAELFAFDTETTSLDYLQAQIVGVSFAVQVGE----- 366

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                ++ L+         +      +L+ LK   EN    KIG N+KYD  VL  +GI 
Sbjct: 367 ---AAYVPLAHDYL--GAPQQLSCDNVLAVLKPLLENPKKRKIGQNLKYDAHVLANHGIH 421

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQV 538
           ++G   D ML SYVL+S  + HD+ S+AQ +L     T +++    K  +  ++I     
Sbjct: 422 LQGMAFDTMLESYVLNST-TKHDMDSLAQIYLQKTTITFEDVAGKGKKQLSFNQIPLEHA 480

Query: 539 QEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ LQL   L  +L    KL  +++ L+ P+I V+ +ME  G++ID  LL Q
Sbjct: 481 TPYACEDADITLQLHQNLWEQLQNRPKLERIFDDLEMPLIPVLIRMERHGVKIDATLLHQ 540

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            SAE++  L  LE+  Y+ +G +FNL+SPKQL  ILF KL  P   KT      T  + L
Sbjct: 541 QSAELATRLQQLEQAAYEEAGTEFNLNSPKQLQTILFDKLSLPVLKKTPKKDPSTAVEVL 600

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ + IL +R LSK+KSTY D+LP  IN +T RVHT Y  A T TGRL+S  
Sbjct: 601 EELAI-DYPLPQLILIYRSLSKLKSTYTDTLPQQINPKTGRVHTSYHQAVTTTGRLSSTN 659

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI++  G++IR+AFI+P    L++ADYSQIELRI+AH+++   L        DI
Sbjct: 660 PNLQNIPIRSAEGRRIRQAFIAPKGYCLLAADYSQIELRIMAHLSEDEKLLSALTAGEDI 719

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H+ VAAE+F + +++V+ + RR AK +NF ++YG+  F LA QL I R +A  Y+  YF 
Sbjct: 720 HKAVAAEVFDLAMDEVTTEQRRQAKAVNFGLMYGMQAFGLAKQLGIERHQAQIYMDAYFA 779

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+  Y++  +   +Q GYVET+FGRR++  EI +     R   ER AINAP+QG+AA
Sbjct: 780 RYPGVKAYMDDMRVLAKQQGYVETVFGRRLYIPEIKTRHIGRRQAAERTAINAPMQGTAA 839

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ +RAM++V   +E   L  KML+Q+HDELVFE+ E  I  A   I+ +M +       
Sbjct: 840 DLIKRAMLTVDDWIEKSGLDVKMLMQVHDELVFEIAETVIEEAKVAIIEAMTQVA----E 895

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L+VPL V+I +  NW E +
Sbjct: 896 LKVPLIVDIGIGKNWDEAH 914


>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
 gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
          Length = 937

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/983 (34%), Positives = 541/983 (55%), Gaps = 56/983 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 3   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A IFD    TFR+++YP YK +R  +P+ L  Q+  +  A +A G P + ++G EADD+I
Sbjct: 58  ACIFDAKGKTFRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVVEGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V  K+G+PPE++V 
Sbjct: 118 GTLAERAAREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L E+G+L+N++ +A  IK     EN+    E   
Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLTEFGSLDNVIAHAGEIKG-VVGENLRNTLEWLP 236

Query: 242 LSRKLVMLRTDVPIT---IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++ D  ++      + LI    +  +L+ F     F   +           A+
Sbjct: 237 KGRELLTVKLDCNLSKEVPTFDALIDGGEDKSKLVDFFSRYGFKTWLRE---------AS 287

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E +    +    +  A   +       +    ++L D  +                   
Sbjct: 288 GEALPDTRSVGAARNAATPVKNYAGEAAQLQAQANLFDVEAPP----------------- 330

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +   Y  +     ++ W+Q+L+ +        T ++D   ++ + I++S     +
Sbjct: 331 -----DEIKYETVTTEAQLESWMQRLDEVDLVCIDTETTSIDPMLAQLVGISLSVKPG-E 384

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D++   +            +L+ +K + E+E   K+G ++KYD  V   
Sbjct: 385 ACYIPVAHRGPDVAGFDA----AAQLSRDTVLARMKLWLEDESRKKVGQHLKYDAHVFAN 440

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           + I++RG   D ML SYVL+S R+ H + ++A++ L     T + +     S I  D++ 
Sbjct: 441 HDIALRGIEHDTMLESYVLESHRN-HGMDALAERVLHLKTITYEAVCGKGASQIGFDEVP 499

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E+++V L+L   L PK+  + KL +VYE+++ P   V+ +ME  G+ ID D
Sbjct: 500 LDRATEYAAEDADVTLRLHRTLFPKVAEDDKLRYVYEQIEMPASIVLQKMERNGVLIDAD 559

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S E+   L+ LE   + L+G+ FNLSSPKQ+GDI F ++K P   KT +G   T 
Sbjct: 560 RLAKQSNELGLRLIDLEAEAHKLAGQPFNLSSPKQIGDIFFNQMKLPVIKKTASGAPSTD 619

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +L++R L+K+KSTY D LP  +N RT RVHT Y  A+ +TGRL
Sbjct: 620 EEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAVTGRL 678

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T+ G++IR AFI+P    ++SADYSQIELRI+AH+++   L + F  
Sbjct: 679 ASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMRAFRE 738

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+F V   +V+P  RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 739 GQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAFGLASNLGIGRDAAKLYID 798

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG   Y+++T+   R+ GYVET+FGRR+   +IN      R   ERAAINAP+Q
Sbjct: 799 RYFARYPGAASYMDETRQRAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQ 858

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +M++V   L+   + +++++Q+HDELV EVP++E+    + +   M     
Sbjct: 859 GTAADLIKLSMLAVQGWLDAEAMRSRLVMQVHDELVLEVPQDELAVVRERLPELMCSVA- 917

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL   + V  NW+E +
Sbjct: 918 ---TLRVPLVAEVGVGANWEEAH 937


>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
 gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
          Length = 944

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/991 (34%), Positives = 547/991 (55%), Gaps = 65/991 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 3   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 58  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T T  A +EG    + + DKDL QLV+    L +T+  E +D   V+ K+G+PPEK+V 
Sbjct: 118 GTLTERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPEKIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L+N++  A  IK     EN+    +   
Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLGEYGSLDNVIARAGEIKG-VVGENLRNTLDWLP 236

Query: 242 LSRKLVMLRTDVPITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++ D  +      LE L+    +  +L+ F     F   +             
Sbjct: 237 KGRELLTVKIDCDLATEVPTLEALVDGGEDRAKLVDFFSRYGFKTWLR------------ 284

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E   ++   T    +     + +           +     
Sbjct: 285 --------------------EAAGESLPDTRSVGAARKAATPVKQYAPEAAAQQQASLFD 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            + P     Y  +     ++ W++ L+T+        T ++D   ++ + I++S    + 
Sbjct: 325 VETPPAEVKYETVTTEAQLESWMRLLDTVELVCIDTETTSIDPMLAQLVGISLSVQPGQ- 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+S   +          + +L+ +K + E+E   K+G ++KYD  V   
Sbjct: 384 ACYIPVAHRGPDVSGLDN----AAQLSREAVLARMKLWLEDETRKKVGQHLKYDAHVFAN 439

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++RG   D ML SYVL S R+ H + ++A++ L     T +E+     + I  D+++
Sbjct: 440 HGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQIGFDEVA 498

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L PK+   +KL +VYE+++ P   V+ +ME  G+ +D +
Sbjct: 499 LDRATEYAAEDADITLRLHRALYPKVTEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAE 558

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + SAE+ + LL LE+  + L+G+ FNL+SPKQ+G++ FT+LK P   KT +G   T 
Sbjct: 559 RLARQSAELGQRLLELEQQAFALAGQPFNLNSPKQIGELFFTQLKLPVVKKTASGAPSTD 618

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +TGRL
Sbjct: 619 EEVLQKL-AEDYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRL 677

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH+++   L + F  
Sbjct: 678 ASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLMRAFRE 737

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 738 GQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYID 797

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERAAINAP+Q
Sbjct: 798 RYFARYPGVARYMDETRQVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQ 857

Query: 894 GSAADITRRAMISVHKSLEDH--------KLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           G+AAD+ + +M++V   LE           + T++++Q+HDELV EVP++E+    + + 
Sbjct: 858 GTAADLIKLSMLAVQDWLEGSPNAGKPGVPMRTRLVMQVHDELVLEVPQDELARVRERLP 917

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M        +LRVPL   + V +NW+E +
Sbjct: 918 ELMCDVA----SLRVPLVAEVGVGSNWEEAH 944


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1033 (40%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ        
Sbjct: 16   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E+  +EAD
Sbjct: 76   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY+  AE  G  V I+S+DKDLMQLVS     YD             E  +D E +
Sbjct: 136  DLIATYSRQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L  A  IKQ 
Sbjct: 196  IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERAGEIKQP 255

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 256  KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315

Query: 288  VATTYDCDAANIEPVVL------------------------DINTTENKGIAIETEIDRD 323
            +A     D   ++P                           D    + +  A     D +
Sbjct: 316  IAQMLHVDPEAVKPDPALLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375

Query: 324  TTIKTSQFSSLSDQTSKINS--------EQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D      +        E TP  L   R  + S  P +  +Y  I    
Sbjct: 376  APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 435  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494

Query: 432  -----SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                 +   + D           L  LK   E+   LK+G N+KYD  VLHRYGI +R F
Sbjct: 495  FGESGAGADASDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVRPF 554

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +      ++  + ++ +  D ++  +   +A 
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDHVAIDKATAYAA 614

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 615  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GE+F +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 675  QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL +RQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 735  GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  +DIH   A+
Sbjct: 795  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 855  AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 915  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +LE  KL  +MLLQ+HDELVFEVP++E+     +I   ME+A  P + LRVPL 
Sbjct: 975  MTRMEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034

Query: 964  VNIKVSNNWQEEN 976
            V  + + NW+E +
Sbjct: 1035 VEARAAGNWEEAH 1047


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 957

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/998 (35%), Positives = 541/998 (54%), Gaps = 71/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRGELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDANPVTQ 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N E  +                         + + + +     + +EQT           
Sbjct: 301 NSEEKI------------------------PNNYQATASVPQAVETEQT----------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            ++  I+   Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 326 FAKVEIDRSRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFL 463
              +         +E    DL    ++       +   K       L+ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +   +G+ + G   D ML SY L+S    H++  +A ++L +     +E
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNST-GRHNMDELADRYLGHKTIEFEE 504

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMID 578
           I    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P+++
Sbjct: 505 IAGKGKNQLTFDKIAIDVASKYAAEDADVTMKLHQVLVPELDKTPTLVKLFNEIEMPLVE 564

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFTKL 
Sbjct: 565 VLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFTKLG 624

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN++T R
Sbjct: 625 LPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGR 684

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI+
Sbjct: 685 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIM 744

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    +   F    DIH   AAEIFG+ +++V+ + RR AK INF +IYG+S F L+
Sbjct: 745 AHLANDEGMITAFAEGKDIHCATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLS 804

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S  + 
Sbjct: 805 NQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAM 864

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMI + K++       KM++Q+HDELVFEV EE I 
Sbjct: 865 RRKAAERVAINAPMQGTAADIIKVAMIDIDKAIRGDD-NIKMIMQVHDELVFEVKEELIE 923

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             SQ+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 924 HYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDEAH 957


>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
          Length = 959

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 541/991 (54%), Gaps = 66/991 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 19  ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 73

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+++YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 74  ACVFDAKGKTFRDDLYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVI 133

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V+ K+G+PP K+V 
Sbjct: 134 GTLAERATREGVRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPGKIVD 193

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L++++  A  IK     EN+    +   
Sbjct: 194 YLSLIGDTVDNVPGVPKVGPKTAVKWLGEYGSLDSVIARAGEIKG-VVGENLRNTLDWLP 252

Query: 242 LSRKLVMLRTDVPITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  +         LI    +  +L+ F     F   +   +     D   
Sbjct: 253 KGRELLTVKTDCDLATEVPTFAALIDGGEDRAKLVDFFGRYGFKTWLREASGESLPD--- 309

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                           ++       T +K     + + Q S  + E  P ++        
Sbjct: 310 --------------TRSVGAARKAATPVKQYAPEAAAQQASLFDVEAPPAEV-------- 347

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +     ++ W++ L+          T ++D   ++ + +++S    + 
Sbjct: 348 --------KYETVTTEAQLESWMRLLDASALVCLDTETTSIDPMQAQLVGLSLSVEPGQ- 398

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+S              + +L+ +K + E+    K+G ++KYD  V   
Sbjct: 399 ACYIPVAHRGPDVS----GLEAAGQLAREAVLARMKPWLEDASRKKVGQHLKYDAHVFAN 454

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++RG   D ML SYVL S R+ H + ++A++ L     T +E+     S I  D++ 
Sbjct: 455 HGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGASQIGFDEVP 513

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   + PK+  + KL +VYE+++ P   V+ +ME  G+ ID +
Sbjct: 514 LDRATEYAAEDADITLRLHRAMYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAE 573

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S  + + LL LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT +G   T 
Sbjct: 574 RLARQSTGLGQRLLELEQQAYALAGQPFNLNSPKQIGEIFFTQLKLPVIKKTASGAPSTD 633

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +TGRL
Sbjct: 634 EEVLQKL-AEDYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRL 692

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH+++   L + F  
Sbjct: 693 ASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFRE 752

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 753 GQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYID 812

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERAAINAP+Q
Sbjct: 813 RYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQ 872

Query: 894 GSAADITRRAMISVHKSLE--------DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           G+AAD+ + +M++V   L+           + T+ ++Q+HDELV EVP+EE++   + + 
Sbjct: 873 GTAADLIKLSMLAVQDWLDGSPSTGKPGAPMRTRQVMQVHDELVLEVPQEELSLVRERLP 932

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M         LRVPL   + V  NW+E +
Sbjct: 933 ELMCGVAA----LRVPLVAEVGVGANWEEAH 959


>gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2]
          Length = 935

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/987 (35%), Positives = 531/987 (53%), Gaps = 67/987 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K+    LVDGSS+++RAF+  P L+    G    AI G  NML  L++    +   +H 
Sbjct: 4   SKKPPFILVDGSSYLFRAFHGLPPLTNSK-GQDTGAIYGVVNMLKSLIR----QYNPTHM 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVIFD    TFR++IY +YKANRP +PE L  Q+  +    +A G+P I   G EADD+I
Sbjct: 59  AVIFDAKGKTFRDDIYEEYKANRPPMPEELRSQIEPLHTIIKAMGLPLIVESGVEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A + G    I + DKD+ QLV+    L +T+ ++ +DIE V  K+GIPPE ++ 
Sbjct: 119 GTLACRATEHGIDTLISTGDKDMAQLVNENVTLINTMTDQIMDIEGVNTKFGIPPELVID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILE 235
             AL GD +DNIPG+PG+G K+A  LL   G +  I  N  +I        K     + E
Sbjct: 179 FLALKGDKVDNIPGVPGVGDKSAQALLNGIGGISAIYDNLDKIADLSFRGSKTMATKMQE 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           Y E ARLS  L  +  D+ +   ++ L     +   L S     EF +    ++     D
Sbjct: 239 YEEQARLSYTLATIAIDLDLQYKIDELCPTLPDNETLQSMFAEFEFKRWHTEISALLASD 298

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                  E  +    K++  +S S+      ++           
Sbjct: 299 GN---------------------EPSKAENGKSTSDASDSESNDTDVAQ----------- 326

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
               +  I+   Y  +++    + W+++L+     +    T +++   ++ + ++     
Sbjct: 327 ---PESNIDKSGYDVVLDEATFEAWIEELKAAPLIAVDTETTSVNYMEAELVGVSFCIEP 383

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                   V   + D     S+D          +LS LK   E+E  +K+G +IKYDK V
Sbjct: 384 G-AAAYVPVAHDYPDAPTQLSRDY---------VLSALKPILESETIIKVGQHIKYDKNV 433

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L  Y I++ G   D ML SYVL+S    HD+ S+A  +L +     +EI       +  +
Sbjct: 434 LAHYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEEIAGKGAKQLTFN 493

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   +   +A E++++ ++L   +  KL  E KL  +   ++ P+  V+S+ME  G+ I
Sbjct: 494 QIGLEEAGPYAAEDADITMRLHQAIWAKLENEPKLKALLVDVEVPVACVLSRMEQQGVLI 553

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           +   L+Q S +++  +  LE+ +++ +GE FNL SPKQL  ILF K+  P   KT  G  
Sbjct: 554 ESQRLRQQSQDLATRIAELEKEVHEEAGEVFNLGSPKQLQHILFEKMSLPVIKKTPKGAP 613

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T+ + L+++   + P+ K ++E+R L+K+K+TY D LP  IN RT RVHT Y  A T T
Sbjct: 614 STSEEVLQELAL-EFPLPKKLMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITAT 672

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+ + G+K+R+AF+     K+++ADYSQIELRI+AH++    L   
Sbjct: 673 GRLSSTDPNLQNIPIRNEEGRKVRQAFVPREGYKIVAADYSQIELRIMAHLSGDEGLLDA 732

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  DIH+  AAE+FGV +++V+ + RR AK INF +IYG+S F LA QL IPR EA  
Sbjct: 733 FAHGRDIHKATAAEVFGVTLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIPRHEAQK 792

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+ EY++ T+   ++ GYVET+FGRR++  +I +   + R   ERAAINA
Sbjct: 793 YMDLYFERYPGVLEYMDSTREGAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINA 852

Query: 891 PIQGSAADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI + AMI V   +         M++Q+HDELVFE+ EE +    + IV  ME
Sbjct: 853 PMQGTAADIIKMAMIKVDDWITSLESDDVLMMMQVHDELVFEIREEHLEEQVKNIVSLME 912

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           +A +    L VPL V+  V +NW E +
Sbjct: 913 QAAV----LNVPLVVDAGVGDNWDEAH 935


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1033 (40%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ        
Sbjct: 21   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 80

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E+  +EAD
Sbjct: 81   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 140

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY   AE  G  V I+S+DKDLMQLVS     YD             E  +D E +
Sbjct: 141  DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 200

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L  AS IKQ 
Sbjct: 201  IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 260

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 261  KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 320

Query: 288  VATTYDCDAANIEPVVL------------------------DINTTENKGIAIETEIDRD 323
            +A     D   ++P                           D    + +  A     D +
Sbjct: 321  IAQMLHVDPEAVKPDPSLLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 380

Query: 324  TTIKTSQFSSLSDQTSKINS--------EQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D      +        E TP  L   R  + S  P +  +Y  I    
Sbjct: 381  APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 439

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 440  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 499

Query: 432  -----SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                 +   + D           L  LK   E+   LK+G N+KYD  VLHRYGI +  F
Sbjct: 500  FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVTPF 559

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +      ++  + ++ +  D+++  +   +A 
Sbjct: 560  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 619

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 620  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 679

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GE+F +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 680  QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 739

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL +RQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 740  GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 799

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  +DIH   A+
Sbjct: 800  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 859

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 860  AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 919

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 920  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 979

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +LE  +L  +MLLQ+HDELVFEVP++E+     +I   ME+A  P + LRVPL 
Sbjct: 980  MTRMEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1039

Query: 964  VNIKVSNNWQEEN 976
            V  + + NW+E +
Sbjct: 1040 VEARAAGNWEEAH 1052


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1033 (40%), Positives = 609/1033 (58%), Gaps = 61/1033 (5%)

Query: 4    ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++ + LVDGSSFI+RA++ +        +R  DGLP  A+  FC  + + LQ        
Sbjct: 16   DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E+  +EAD
Sbjct: 76   THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168
            D+IATY   AE  G  V I+S+DKDLMQLVS     YD             E  +D E +
Sbjct: 136  DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195

Query: 169  IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L  AS IKQ 
Sbjct: 196  IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 255

Query: 228  KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            KRRE +L   + A+LSR+LV L   VP+ +PL+ L +   +  +L+ FLKA+EF  L  R
Sbjct: 256  KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315

Query: 288  VATTYDCDAANIEPVVL------------------------DINTTENKGIAIETEIDRD 323
            +A     D   ++P                           D    + +  A     D +
Sbjct: 316  IAQMLHVDPEAVKPDPSLLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375

Query: 324  TTIKTSQFSSLSDQTSKINS--------EQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
               +  +    +D      +        E TP  L   R  + S  P +  +Y  I    
Sbjct: 376  APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434

Query: 376  DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431
             ++ W+ +    G  +    TD +DA  +  + ++++T   +         K E    DL
Sbjct: 435  QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494

Query: 432  -----SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                 +   + D           L  LK   E+   LK+G N+KYD  VLHRYGI +  F
Sbjct: 495  FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVTPF 554

Query: 487  EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAI 543
            +D ML+SYVLD+G+  H +  +A++ L +      ++  + ++ +  D+++  +   +A 
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            E+++V L+LW +++P+L+ E  + VYE L++P++ V+++ME  GI ID+++L ++S + S
Sbjct: 615  EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            + L  LEE I + +GE+F +SSPKQ+GD+LF K+  P   KT +GQW T A  LE++   
Sbjct: 675  QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734

Query: 664  DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
             + + K IL +RQLSK+KSTY DSL  H ++ T RVHT ++LA+T TGRL+S +PNLQNI
Sbjct: 735  GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794

Query: 724  PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            PI+T+ G++IRRAF++P  KKLISADYSQIELR+LAHIA I  L + FE  +DIH   A+
Sbjct: 795  PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             +FGV +++++  +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI 
Sbjct: 855  AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +YI+ TK   R+ GYV T+FGR  HY +I S   S R   ER AINAPIQG+AADI RRA
Sbjct: 915  DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            M  +  +LE  +L  +MLLQ+HDELVFEVP++E+     +I   ME+A  P + LRVPL 
Sbjct: 975  MTRMEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034

Query: 964  VNIKVSNNWQEEN 976
            V  + + NW+E +
Sbjct: 1035 VEARAAGNWEEAH 1047


>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
 gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
 gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
          Length = 926

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/983 (35%), Positives = 526/983 (53%), Gaps = 73/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGG-VGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +     A  
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDSEPAAAAGA 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                         G   E  +                                      
Sbjct: 302 AGAAAAGAAPDPASGATAELPL-------------------------------------- 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 324 ----ATARNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAEIVGLSFSVEPG-H 378

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 379 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLAN 429

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 430 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 488

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 489 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 548

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 549 RLSRQSGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 609 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 667

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 668 ASNDPNLQNIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 727

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 787

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 788 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 847

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 848 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 906

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 907 ---KLKVPLVAEVGVGENWEEAH 926


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/998 (35%), Positives = 541/998 (54%), Gaps = 71/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDANPVTQ 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N E  +                         + + + +     + +EQT           
Sbjct: 301 NSEEKI------------------------PNNYQATASVPQAVETEQT----------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            ++  I+   Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 326 FAKVEIDRSRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFL 463
              +         +E    DL    ++       +           L  LK   E+    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEPAEAETTTSFELAKNQLNLTACLIELKPLLESADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +   +G+ + G   D ML SY L+S    H++  +A ++L +     +E
Sbjct: 446 KIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNST-GRHNMDELADRYLGHKTIEFEE 504

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMID 578
           I    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P+++
Sbjct: 505 IAGKGKNQLTFDKIAIDIASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVE 564

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFTKL 
Sbjct: 565 VLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFTKLG 624

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN +T R
Sbjct: 625 LPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGR 684

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI+
Sbjct: 685 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIELRIM 744

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F L+
Sbjct: 745 AHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLS 804

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S  + 
Sbjct: 805 NQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAM 864

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE + 
Sbjct: 865 RRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEELVE 923

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             SQ+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 924 HYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDEAH 957


>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
          Length = 932

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/983 (36%), Positives = 531/983 (54%), Gaps = 68/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + I+G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K    V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 AVEASKANQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREAVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  + +L   E
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKVAELPIRGAKKLGDKLLAEKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++TDV + I  E L L   N  +L  +    EF + +N V    D    N
Sbjct: 242 MADLSYRLATIKTDVALDITPEQLTLGASNNDQLTEYFGRYEFKRWLNEVMNGADSITNN 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                                     T   + + TP        + L
Sbjct: 302 NEQ-----------------------------------PTKINHYQATPALAQNNDDEAL 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +WV+KL+     +    T+ +D   +  + I+ +  + + 
Sbjct: 327 PAIQIDRSRYETLLTEADLNRWVEKLKQAKLFALDTETNNLDYMAANLVGISFALENGEA 386

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                       L +        K       L+ LK   EN    K+G N KYD  +  R
Sbjct: 387 AY----------LPLQLDYLGAPKTLEKTTALALLKPVLENPAIQKVGQNFKYDLTIFAR 436

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            GI ++G   D ML SYVL+S    H++  +A+++L +     +EI    K+ +  ++I 
Sbjct: 437 NGIDVQGVAFDTMLESYVLNST-GRHNMDDLAKRYLGHQTITFEEIAGKGKNQLTFNQIP 495

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E+++V ++L  +L  KL     L  +++ ++ P++ V+S+ME  G+ ID D
Sbjct: 496 LEKAAEYAAEDADVTMKLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSD 555

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L  LEE  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 556 ALFLQSNEIANRLSELEEQAYVLAGQPFNLASTKQLQEILFDKLGLPVIQKTPKGAPSTN 615

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 616 EEVLEELAFS-HELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRL 674

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH+++   L   F  
Sbjct: 675 SSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLINAFTQ 734

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV +++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+ 
Sbjct: 735 GKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGIGRADAQSYMD 794

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+  ++   +   +  GYVET+FGRR++  +INS     R   ER AINAP+Q
Sbjct: 795 LYFKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPDINSSNGMRRKAAERVAINAPMQ 854

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + L+ +     M++Q+HDELVFEV  E++   S++I   ME A  
Sbjct: 855 GTAADIIKRAMIQLDQKLQ-NDPDIAMIMQVHDELVFEVRSEKVEFYSKLIKTHMESAA- 912

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
              +L VPL V++    NW E +
Sbjct: 913 ---DLVVPLIVDVGQGTNWDEAH 932


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 957

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/998 (35%), Positives = 542/998 (54%), Gaps = 71/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV+    L +T+    +D E VI K+GIPPE ++   
Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDANPVTQ 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N E  +                         + + + +     + +EQT           
Sbjct: 301 NSEEKI------------------------PNNYQATASVPQAVETEQT----------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            ++  I+   Y  +   + +Q W++K+  +   +    TD +D+  +  + ++       
Sbjct: 326 FAKVEIDRSRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFL 463
              +         +E    DL    ++       +   K       L+ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +   +G+ + G   D ML SY L+S    H++  +A ++L +     +E
Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNST-GRHNMDELADRYLGHKTIEFEE 504

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMID 578
           I    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P+++
Sbjct: 505 IAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVE 564

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID + L   S EI + L  LE+ ++  +GE FNL+S KQL +ILFTKL 
Sbjct: 565 VLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAGEVFNLASTKQLQEILFTKLG 624

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN++T R
Sbjct: 625 LPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGR 684

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI+
Sbjct: 685 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIM 744

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F L+
Sbjct: 745 AHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLS 804

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A  Y++ YF R+P + +++   +    + GYVET+FGRR++  EI S  + 
Sbjct: 805 NQLGISRADAKKYMELYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAM 864

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE + 
Sbjct: 865 RRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEELVE 923

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             SQ+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 924 HYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDEAH 957


>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
 gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
          Length = 946

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 540/991 (54%), Gaps = 65/991 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  L LVDGSS++YRA++A P L R  +G P  AI G  NML KL    R +  A + 
Sbjct: 5   ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+E+YP YK +R  +P+ L  Q+  +  A +A G P + + G EADD+I
Sbjct: 60  ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A +EG    + + DKDL QLV+    L +T+  E +D   V+ K+G+PP K+V 
Sbjct: 120 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPGKIVD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             +L GD++DN+PG+P +G KTA   L EYG+L++++  A  IK     EN+    +   
Sbjct: 180 YLSLIGDTVDNVPGVPKVGPKTAVKWLGEYGSLDSVIARAGEIKG-VVGENLRNTLDWLP 238

Query: 242 LSRKLVMLRTDVPITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R+L+ ++TD  +       E L+    +  +L+ F     F   +             
Sbjct: 239 KGRELLTVKTDCDLATEVPTFEALVDGGEDRAKLVDFFGRYGFKTWLR------------ 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E   ++   T    +     + +           +     
Sbjct: 287 --------------------EASGESLPDTRSVGAARKAATPVKQYAPEAAAQPQAGLFD 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            + P     Y  +     ++ W++ L+          T ++D   ++ + +++S    + 
Sbjct: 327 VEAPPAEVKYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGLSLSVEPGQ- 385

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+S     D+ G     + +L+ +K + E+    K+G ++KYD  V   
Sbjct: 386 ACYIPVAHRGPDVS---GLDAAG-QLSREAVLARMKPWLEDAARKKVGQHLKYDAHVFAN 441

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++RG   D ML SYVL S R+ H + ++A++ L     T +E+     S I  D++ 
Sbjct: 442 HGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGASQIGFDEVP 500

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L PK+  + KL +VYE+++ P   V+ +ME  G+ ID +
Sbjct: 501 LDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAE 560

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S  + + LL LE+  Y L+G+ FNL+SPKQ+G+I FT+LK P   KT +G   T 
Sbjct: 561 RLARQSTGLGQRLLELEQQAYALAGQPFNLNSPKQIGEIFFTQLKLPVIKKTASGAPSTD 620

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +L++R L+K+KSTY D LP  +N +T RVHT Y  A+ +TGRL
Sbjct: 621 EEVLQKL-AEDYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRL 679

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T+ G++IR AF++P    ++SADYSQIELRI+AH+++   L + F  
Sbjct: 680 ASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFRE 739

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FGV   +V+ + RR+AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 740 GQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYID 799

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+    + GYVET+FGRR+   +IN      R   ERAAINAP+Q
Sbjct: 800 RYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQ 859

Query: 894 GSAADITRRAMISVHKSLE--------DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           G+AAD+ + +M++V   L+           + T+ ++Q+HDELV EVP+EE++   + + 
Sbjct: 860 GTAADLIKLSMLAVQDWLDGSPSAGKPGAPMRTRQVMQVHDELVLEVPQEELSLVRERLP 919

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M        +LRVPL   + V  NW+E +
Sbjct: 920 ELMCGVA----SLRVPLVAEVGVGANWEEAH 946


>gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b]
 gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b]
          Length = 993

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/984 (42%), Positives = 587/984 (59%), Gaps = 16/984 (1%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           H+FLVDGSSF++RA++ +     K     D LP  A+  FC  L++ ++      + +H 
Sbjct: 13  HVFLVDGSSFVFRAYFQSIRQDAKYNYRADRLPTGAVRLFCAKLFQFVREGAAGVMPTHL 72

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A+IFD    +FR EIYPDYKA+R + P  L+PQ PL+R A +AFG+  IE   +EADD+I
Sbjct: 73  AIIFDKSENSFRKEIYPDYKAHRQEPPADLVPQFPLMRAAVRAFGLLPIEQDVYEADDLI 132

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----TVKEEKIDIEHVIKKWGIPPE 177
           ATY  +A   G  V I+S DKDLMQL+     +YD    T +E +I    VI+ +G+PPE
Sbjct: 133 ATYAKLARARGADVLIVSADKDLMQLIDDKVSMYDPASGTREERRIGYNEVIEYFGVPPE 192

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K+V +QAL GDS DN+PG  GIG KTAALL+ EYG+L+ +L  A  IKQ KRRE + + A
Sbjct: 193 KVVDVQALAGDSTDNVPGAKGIGVKTAALLINEYGDLDTLLARAGSIKQPKRREVLTDPA 252

Query: 238 ETARL--SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             A +  S+KLV L  D P+ I L+ L L   +G  L+SFL+A+EFT+L  R A TY  +
Sbjct: 253 SVALIRTSQKLVKLVDDAPLEISLDDLGLHQPDGKTLVSFLQAMEFTQLTRRAAETYGVE 312

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A  IEP    +     +G   E           +  + L    +      TP  L   R 
Sbjct: 313 ANEIEPDPAFVGPAGWRGRNGEVAEAPAQQAPAAPAAKLPTPEA---GALTPAALAEARR 369

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           ++     I+   Y  +   + +  W+ +    G  +    T ++D      + ++++T  
Sbjct: 370 EEGVATKIDRSLYETVTTLERLDAWIAEAFAAGFVAMDTETTSLDPMSCDLVGVSLATAP 429

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +               +    +         + ++ LK   E    LKI  N+KYD LV
Sbjct: 430 GRACYIPLRHVASAGPDLLGGGEPPPAQIPFDDAIARLKPLLEARSVLKIAQNMKYDLLV 489

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
           L   G+ +   ED ML+SY LDSGR++H +  +A+K L +       +  S +S I   +
Sbjct: 490 LACCGVDVAPIEDTMLISYALDSGRNNHGLDELAKKHLGHECIPFAAVAGSGRSFIGFAR 549

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   +  E+A E+++V L+LW +L+P+L  E +  VYE L++PM+ V++ ME  G+ ID+
Sbjct: 550 VPLDKATEYAAEDADVALRLWRVLKPRLAAEHMTSVYETLERPMVGVLAAMERRGVAIDR 609

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L ++S E ++++  LE  IYDL+GE FNL SPKQLGDILF ++  P   KT TG W T
Sbjct: 610 NILSRLSGEFAQDMARLEAEIYDLAGESFNLGSPKQLGDILFGRMGLPGAKKTATGAWST 669

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +A  LE +    N     IL+WRQLSK+KSTY D+LP  +NK T RVHT Y+LA+T TGR
Sbjct: 670 SASVLEDLAESGNTFAARILDWRQLSKLKSTYTDALPGFVNKATNRVHTSYALAATTTGR 729

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIP++ + G+KIR+AF++ P   LISADYSQIELR+LAHIA I  L Q F 
Sbjct: 730 LSSSEPNLQNIPVRNEAGRKIRKAFVAEPGHALISADYSQIELRLLAHIADIPQLRQAFA 789

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +DIH   A+E+FGV ++ +   +RR AK INF IIYGIS F LA QL IPR EAA YI
Sbjct: 790 EGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINFGIIYGISAFGLANQLGIPREEAAAYI 849

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           KRYF RFPGI +Y++KTK  VR+ G V TIFGR+ H+  I S  +S R   ERAAINAPI
Sbjct: 850 KRYFERFPGIRDYMDKTKRLVREQGVVTTIFGRKCHFPRIGSSNASERAFFERAAINAPI 909

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI RRAM  +  +L     + +ML+Q+HDELVFE P EE  T   ++   ME+A 
Sbjct: 910 QGAAADIIRRAMARMDAALATAGCSARMLMQVHDELVFEAPLEETETTIAVVKRVMEEAP 969

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
            P   L VPL+V  + + NW E +
Sbjct: 970 HPAATLTVPLQVEARAAQNWDEAH 993


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1000 (35%), Positives = 544/1000 (54%), Gaps = 74/1000 (7%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K   N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         
Sbjct: 1   MAKIASNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLIAQVE----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           SH AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EAD
Sbjct: 56  SHIAVVFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A K G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE 
Sbjct: 116 DVIGTLAVQAAKAGKDVLISTGDKDMAQLVNEHIMLINTMTNTLLDREGVIEKYGIPPEL 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRREN 232
           ++   AL GDS DNIPG+ G+G KTA  LLQ  G+++ I  N  ++        K     
Sbjct: 176 IIDYLALRGDSSDNIPGVKGVGEKTALALLQGIGSIQTIYQNLDKVAELSFRGAKTFAPK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +    E A LS  L  ++TDV +    + L     N   L++     EF K ++ V    
Sbjct: 236 LEAEKEMADLSYLLATIKTDVELEFRHDQLTTSPQNHDELVALFSQYEFKKWLSEV---- 291

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                              KG A        T  +  +  +  + T  + +E T      
Sbjct: 292 -------------------KGGANPV-----TQTEKVKIPNAYEVTQAVQNEPT------ 321

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                 ++  I+   Y  I  T  + +W++K++     +    TD++D+  +  + I+++
Sbjct: 322 -----FAKVNIDRSKYETITETAALNRWLEKIQMEKCIALDTETDSLDSMRANLVGISLA 376

Query: 413 TLDQKDDTSFKVE-------TIFIDLSVHTSQ----DSTGKNTLTKEILSYLKKFFENEH 461
               +                   DL     +    +           L+ LK   EN  
Sbjct: 377 LASGEACYIPLAHKTLVTTSAGQGDLFSSEMETVGYELAKNQLNLTACLAQLKPILENPE 436

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE- 519
             KIG NIKYD  V   +GI+++G   D ML SY L+S    H++  ++ ++L +   E 
Sbjct: 437 IKKIGQNIKYDLTVFANHGINVQGVAFDTMLESYTLNST-GRHNMDDLSDRYLGHKTIEF 495

Query: 520 --ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPM 576
             I    K+ +  D+I  S   E+A E+++V ++L  +L  +L+ E  L+ +++ ++ P+
Sbjct: 496 EAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLWSQLVQEPTLVKLFDEIELPL 555

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+S++E  G+ ID   LKQ S+EI + L  LE+ ++  +G  FNL+S KQL +ILF K
Sbjct: 556 VSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVHSEAGSVFNLASTKQLQEILFEK 615

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L  P   KT  G   T  + LE++    + + K ++E R LSK+KSTY D LP  IN +T
Sbjct: 616 LGLPILKKTPKGAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMINAKT 675

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELR
Sbjct: 676 GRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELR 735

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH+A    + + F    DIHR  A+EIFGV +++V+ + RR+AK INF +IYG+S F 
Sbjct: 736 IMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGMSEFG 795

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ QL I R++A  Y++ YF+R+P + +++   K    + GYVET+ GRR++  EI S  
Sbjct: 796 LSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEKGYVETLLGRRLYLPEIKSSN 855

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           +  R   ER AINAP+QG+AADI + AMI + + ++ H    KM++Q+HDELVFEV E++
Sbjct: 856 AMRRKAAERVAINAPMQGTAADIIKIAMIGIDRIIQ-HSDEIKMIMQVHDELVFEVREDK 914

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   S +I   MEKA    I L VPL   + + +NW E +
Sbjct: 915 VEHYSALIKAEMEKA----IQLSVPLIAEVGIGDNWDEAH 950


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/998 (35%), Positives = 536/998 (53%), Gaps = 71/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAANDGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 DAADLSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDANPVTQ 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N                                    +++              +E  Q 
Sbjct: 301 NS-----------------------------------AEKIPNNYQATVSAPQAVETEQT 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            ++  I+   Y  +     +Q W++K+  +   +    TD +D+  +  + I+       
Sbjct: 326 FAKVEIDRSRYETVTTMAQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGISFGLANGE 385

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFL 463
              +         +E    DL    ++       +           L  LK   E+    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +   +G+ + G   D ML SY L+S    H++  +A ++L +     +E
Sbjct: 446 KIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNST-GRHNMDELADRYLGHKTIEFEE 504

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMID 578
           I    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P+++
Sbjct: 505 IAGKGKNQLTFDKIAIDIASQYAAEDADVTMKLHQVLSPELEKAPTLVKLFNEIEMPLVE 564

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID + L   S EI + L  LE+ ++  +GE FNL+S KQL +ILFTKL 
Sbjct: 565 VLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAGEVFNLASTKQLQEILFTKLG 624

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN++T R
Sbjct: 625 LPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGR 684

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI+
Sbjct: 685 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIM 744

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F L+
Sbjct: 745 AHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLS 804

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S  + 
Sbjct: 805 NQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAM 864

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMI + K++       KM++Q+HDELVFEV EE I 
Sbjct: 865 RRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDD-NIKMIMQVHDELVFEVKEELIE 923

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             SQ+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 924 HYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDEAH 957


>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
 gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
          Length = 931

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/984 (35%), Positives = 541/984 (54%), Gaps = 71/984 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS+++RA+++ P L+   +G+   A+ G  NML  LL         SH AVI
Sbjct: 7   NPLVLVDGSSYLFRAYHSPPHLTNA-EGMATGAVYGVVNMLKSLLTQF----DPSHIAVI 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRNE+YP+YKANRP +P+ L  Q+  V  A +A G+P I I G EADD+I T 
Sbjct: 62  FDAKGPTFRNEMYPEYKANRPPMPDDLRCQIEPVHKAVKALGLPLICISGVEADDVIGTI 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  EG AV I + DKD+ QLV     L +T+ +  +D + V  K+G+PPE ++ L  
Sbjct: 122 AKQASAEGRAVLISTGDKDMAQLVDENVTLINTMTDTVLDPQGVKDKFGVPPELIIDLLG 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GD+ DNIPG+PG+G KTA  LLQ  G++++I  N   I        K   + ++E+ +
Sbjct: 182 LMGDASDNIPGVPGVGAKTALGLLQGLGSIKDIYNNLDAIAPLGFRGSKTLAKKMIEHKD 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +A +S  L  ++ DV   + L+ L + + +   L    + + F + +  +          
Sbjct: 242 SAEISYALATIKLDVETGVTLDDLAISETDTDALAELYQQMGFKRWLAALL--------- 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                         G      +      K++  +S SD    +                 
Sbjct: 293 -------------GGADATKHVYAGKAAKSNSAASESDSNDVV----------------- 322

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   I+  +Y  I+   D  +W++KL+     +F   T +++   ++ + ++ +  +  +
Sbjct: 323 APCTIDRSNYETILTQADFDRWLEKLQKAELFAFDTETTSLNYIQAELVGLSFAVAEG-E 381

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V   +ID      +D          +L+ LK   E+ +  K+G N+KYDK VL  
Sbjct: 382 AAYLPVAHDYIDAPEQLDRD---------HVLASLKTLLEDSNAKKVGQNLKYDKSVLAN 432

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           YGI++ G   D M+ SYV +S  + HD+ S+A K+L +     +EI    K  +  ++I 
Sbjct: 433 YGINLAGIAYDTMIESYVYNSIATRHDMDSLADKYLGHKTISFEEIAGKGKKQLTFNQIE 492

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E+++V L+L  +L PK+  E  L+ ++  ++ P++ ++S +E  G+ ID+ 
Sbjct: 493 LEQASAYAAEDADVTLRLHNVLWPKIEAEPSLVALFNEVELPLVSILSSVERQGVLIDKS 552

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S E+   +L LE   ++++ + FNLSSPKQL +ILF K++ P   KT  G    T
Sbjct: 553 KLDAQSVELGARMLELEAKAHEIAEQPFNLSSPKQLQEILFVKMELPVIKKTPKGAAS-T 611

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+D+ Q    + P+ K ILE+R LSK+KSTY D LP  I ++T RVHT Y  A T TGRL
Sbjct: 612 AEDVLQELALNYPLPKIILEYRSLSKLKSTYTDKLPTLIEEKTGRVHTSYHQAVTATGRL 671

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++   G++IR+AFI     K ++ DYSQIELRI+AH+++   L   F  
Sbjct: 672 SSSDPNLQNIPVRAGEGRRIRQAFIPETGYKYVAVDYSQIELRIMAHLSQDKGLLTAFSE 731

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+F V ++ V+   RR AK INF +IYG+S F L  QL IP+ EA  Y+ 
Sbjct: 732 GKDIHRATAAEVFSVELDDVTSDQRRSAKAINFGLIYGMSAFGLGRQLNIPQKEAKKYMT 791

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+   +  GYVET+ GRR++  EIN+     +   ERAAINAP+Q
Sbjct: 792 RYFERYPGVLTYMDETRKVAKDKGYVETLSGRRLYLPEINARNKMSQMAAERAAINAPMQ 851

Query: 894 GSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G+A+DI ++AMI+V   +E  +  + +ML+Q+HDELVFE+ EE +      I   M  A 
Sbjct: 852 GTASDIIKKAMINVAGWMETVETNSIRMLMQVHDELVFEIKEEHVEAYVVKIKELMAAAM 911

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L VPL     V +NW E +
Sbjct: 912 ----SLDVPLLAEAGVGDNWDEAH 931


>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
 gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
          Length = 922

 Score =  961 bits (2485), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/985 (35%), Positives = 530/985 (53%), Gaps = 77/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + LVDGSS++YRAF+A P L+   +G P  A+ G  NML +LL    K+   S  AV
Sbjct: 3   DTPIVLVDGSSYLYRAFHALPPLTT-SEGQPTGAVKGVLNMLKRLL----KDYPDSPMAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  TFR+++Y +YKA RP +P+ L  Q+  +    +A G+P + ++G EADD+I T
Sbjct: 58  VFDAPGKTFRDDLYAEYKAQRPPMPDDLRVQVEPLHDCVRALGLPLLCVEGVEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G    I + DKD+ QLV+    L +T+K+E +D   V  K+G+PP  ++   
Sbjct: 118 LARQAAEAGRDAVISTGDKDMAQLVNGHITLVNTMKDETLDTAGVEAKFGLPPSLIIDFL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIK------QKKRRENILEY 236
           AL GD +DNIPG+PG+G KTA  LLQ   G LE +  +  ++K       K   + + E 
Sbjct: 178 ALMGDKVDNIPGVPGVGEKTALGLLQGMEGGLETVYADLEKVKTLSFRGAKTLPKKLEEN 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS +L  ++TD  + + L+ L +   +   L++  + LEF   ++ +    D   
Sbjct: 238 REQAFLSYELATIKTDCELPVGLDDLNIARPDREALLALYRRLEFKNWLSELLEGGDEGV 297

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            ++                                              TP+        
Sbjct: 298 DDV-----------------------------------------AGGTATPEASDTADAG 316

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S    +      I     + +W+ +L    +  F + T ++    +  + + ++    
Sbjct: 317 NGSGARHD----VVITEQAVLDEWLARLADCEAFCFDLETTSLSYMEADIVGVGLALEPG 372

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          +I L+ H   D+  +    + +L  L   + +    KIG N+KYD  VL
Sbjct: 373 E--------AAYIPLA-HDYLDAP-EQLDRQAVLEALAPLWADAGKAKIGQNLKYDISVL 422

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            R+G  + G   D ML SYVLDS  + HD+ S+A K+L       ++I       +  ++
Sbjct: 423 ARHGHEVAGPLHDTMLESYVLDSTATRHDMDSLALKYLGEKTVSFEDIAGKGAKQLTFNQ 482

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQID 591
           I+  Q   +A E+ ++ L+L   LRP++  +  L  V + L++P++ V+S+ME  G+ +D
Sbjct: 483 IALEQAAPYACEDVDITLRLHRELRPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALD 542

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + L + S E+ + +  LE+  ++L+G +FNL SPKQLG+ILF + K P   KT  G   
Sbjct: 543 PERLHEQSRELGERIRELEQRAHELAGREFNLGSPKQLGEILFEEQKIPVIKKTPKGAPS 602

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LE++   D P+ K I+E R  SK++STY D LP  ++  T R+HT Y  A T TG
Sbjct: 603 TAEAVLEELAL-DYPLPKVIMEHRGFSKLRSTYTDKLPKLVDPTTGRLHTSYHQAVTATG 661

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+T+ G++IR+AF++ P  +L++ADYSQIELRI+AH++    L   F
Sbjct: 662 RLSSSDPNLQNIPIRTEQGRRIRQAFVARPGYRLVAADYSQIELRIMAHLSGDKGLLDAF 721

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AAE+FGV ++KVS + RR AK INF +IYG+S + L  QL I R++A  Y
Sbjct: 722 AQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQIY 781

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF R+PG+  Y+E+ +    ++GYVET+FGRR+H  EI+S   + R   ER AINAP
Sbjct: 782 IDRYFDRYPGVARYMERIRAQAAEDGYVETVFGRRLHLPEIHSQNRNRRQGAERTAINAP 841

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI V   L D  +   M++Q+HDELVFEV E E+      +   ME A
Sbjct: 842 MQGTAADIIKRAMIDVDGWLADGDIDAMMVMQVHDELVFEVAESEVDAFMDQVKTRMENA 901

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L V L V  +   NW E +
Sbjct: 902 A----ELDVALTVEAESGANWDEAH 922


>gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus parainfluenzae T3T1]
          Length = 932

 Score =  961 bits (2484), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/983 (36%), Positives = 531/983 (54%), Gaps = 68/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + I+G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K    V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   A
Sbjct: 122 AVAASKANQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDRDAVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  + +L   E
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKVAELPIRGAKKLGDKLLAEKE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++TDV + I  E L L   N  +L  +    EF + +N V    D    N
Sbjct: 242 MADLSYRLATIKTDVALDITPEQLTLGASNNDQLTEYFGRYEFKRWLNEVMNGADSITNN 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                                     T   + + TP        + L
Sbjct: 302 NEQ-----------------------------------PTKINHYQATPALAQDNSDEAL 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +WV+KL+     +    TD +D   +  + I+ +  + + 
Sbjct: 327 PAIQIDRSRYETLLTEADLNRWVEKLKQAKLFALDTETDNLDYMAANLVGISFALENGEA 386

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                       L +        K       L+ LK   EN    K+G N KYD  +  R
Sbjct: 387 AY----------LPLQLDYLGAPKTLEKTTALTLLKPILENPTIQKVGQNFKYDLTIFAR 436

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            GI ++G   D ML SYVL+S    H++  +A+++L +     +EI    K+ +  ++I 
Sbjct: 437 NGIDVQGVAFDTMLESYVLNST-GRHNMDDLAKRYLGHQTISFEEIAGKGKNQLTFNQIQ 495

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L  +L  KL     L  +++ ++ P++ V+S+ME  G+ ID D
Sbjct: 496 LEQAAEYAAEDADVTMKLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSD 555

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L  LEE  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T 
Sbjct: 556 ALFLQSNEIANRLSELEEQAYVLAGQPFNLASTKQLQEILFDKLGLPVIQKTPKGAPSTN 615

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL
Sbjct: 616 EEVLEELAFS-HELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRL 674

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH+++   L   F  
Sbjct: 675 SSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLINAFTQ 734

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV +++V+ + RR+AK INF +IYG+S F L+ QL I R++A  Y+ 
Sbjct: 735 GKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLSIGRADAQSYMD 794

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+  ++   +   +  GYVET+FGRR++  +INS     R   ER AINAP+Q
Sbjct: 795 LYFKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPDINSSNGMRRKAAERVAINAPMQ 854

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI + + L+ +     M++Q+HDELVFEV  E++   S++I   ME A  
Sbjct: 855 GTAADIIKRAMIQLDQKLQ-NDPDIAMIMQVHDELVFEVRSEKVEFYSKLIKTHMESAA- 912

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
              +L VPL V++    NW E +
Sbjct: 913 ---DLVVPLIVDVGQGTNWDEAH 932


>gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
 gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
          Length = 932

 Score =  961 bits (2484), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/977 (40%), Positives = 590/977 (60%), Gaps = 52/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DG+P+ A+AGFCNML + ++ +      +H A
Sbjct: 5   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGIPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT AF I   E++G+EADDIIA
Sbjct: 65  VIFDKGSHTFRNDMYDQYKANREAMPEDLRPQIPLTRTATAAFNIACKELEGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G   TIIS+DKDLMQLV     + D +K + ID + V +K+G+ PE++V +
Sbjct: 125 TLAVQARAAGGRCTIISSDKDLMQLVGDGVEMLDAMKNKTIDRDGVFEKFGVYPERVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L  A  IKQ KRR+ ++++AE  RL
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLERAGEIKQPKRRQTLIDHAEQIRL 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV+L  + PI   ++ L + D +  +L+ FL  +EF  L  RVA     +A  I   
Sbjct: 245 SRSLVLLDENTPIDFTIDDLEVRDPDPEQLLGFLSEMEFRTLSKRVAEVLGREAPAIPEA 304

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                                            +    +++  P
Sbjct: 305 PA---------------------------------------------PAVADAPQIADVP 319

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            ++  Y ++ + + ++ W+ ++  +G  +    T  +D   ++ + +++S    +     
Sbjct: 320 FDHSKYEQVSDAEALRVWLDRIYEVGYVAVDTETTGLDELTAELVGVSLSVEPGQACYIP 379

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     +  S D        +E L  L    E+   LKIG N+KYD  +  + GI+
Sbjct: 380 LTHKASRSDDLFGSDDLAPGQMPFEEALQLLTPMLEDPAILKIGQNMKYDGKIFAQLGIT 439

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D MLMSY + +G   H + ++++++L +T    K +L S KS++  DK+      
Sbjct: 440 VAPIDDTMLMSYAMHAGLHGHGMDTLSERYLGHTPLPIKPLLGSGKSAVTFDKVPMEDAV 499

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++V L+LW L +P+L   ++  VYE L++P++ V++QME  GI +D+D L ++S
Sbjct: 500 PYAAEDADVTLRLWKLFKPQLHRAEVTKVYETLERPLVPVLAQMERAGILVDRDTLSRMS 559

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE +I++L+GE FN+ SP QLG+ILF K+    G K KTG++ T A  LE 
Sbjct: 560 NAFAQKMAGLEADIHELAGETFNVGSPAQLGEILFGKMGLDGGKKGKTGKYSTGADVLED 619

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ + + +L+WRQLSK+KSTY D+L +H+N  T RVHT YS+A   TGRLAS +PN
Sbjct: 620 L-ATEHDLARRVLDWRQLSKLKSTYTDALQDHVNANTGRVHTCYSIAGAATGRLASTDPN 678

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G++IR AF++P  K L++ DYSQIELRILAHIA+I  L + FE   DIH 
Sbjct: 679 LQNIPIRSEEGRRIREAFVAPEGKVLVALDYSQIELRILAHIAQIDALKEAFERGDDIHA 738

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +++++P++RR+AK INF +IYGIS F LA  LRIPR+EA  +I RYF RF
Sbjct: 739 MTASEMFDVPMDQMTPEIRRNAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFERF 798

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  Y++ TK F +++G+V+T+FGR+I+   I + K        RAAINAPIQG+AAD+
Sbjct: 799 PGIRTYMDDTKAFAKEHGFVQTLFGRKINTPNIGA-KGPQAGFAARAAINAPIQGTAADV 857

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI + +++ D  L  KMLLQ+HDEL+FEV +             ME A  P + L 
Sbjct: 858 IRRAMIRMPEAIAD--LPAKMLLQVHDELLFEVEKGAEDALIAAAREVMENANDPVVKLD 915

Query: 960 VPLKVNIKVSNNWQEEN 976
           V L V+  V  NW E +
Sbjct: 916 VKLTVDAGVGANWAEAH 932


>gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238]
 gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238]
          Length = 928

 Score =  961 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/978 (39%), Positives = 576/978 (58%), Gaps = 58/978 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + +         +H A
Sbjct: 5   KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYV-EGNVGGDVTHVA 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRNE+Y  YKANR  +PE L PQ+PL R AT+AF I   EI+GFEADDIIA
Sbjct: 64  VIFDKGSHTFRNEMYDQYKANREAMPEDLRPQMPLTRDATRAFNIACEEIEGFEADDIIA 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDIEHVIKKWGIPPEKMVC 181
           T    A   G   TIIS+DKD+MQLV     + D +K  + ID+E V +K+G+ P +++ 
Sbjct: 124 TLAVQARDAGGRCTIISSDKDMMQLVGGGVVMMDAMKGNKIIDVEGVEEKFGVGPNRVID 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GD+ DN+PG PGIG KTAALL+ EYG+LE +L  A+ IKQ KRRE ++ +     
Sbjct: 184 VQALAGDTADNVPGAPGIGIKTAALLINEYGDLETLLDRAAEIKQPKRRETLINHRAQIE 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS++LV L   + +   L+ L + D +   L+ FL  +EF  +  R++     +A  IE 
Sbjct: 244 LSKRLVTLDDKMDLPFTLDDLEVRDPDPDVLLEFLSQMEFRTMTKRISDKLGVEAPVIED 303

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V +                                                      +Q 
Sbjct: 304 VAV-------------------------------------------------ASDAPAQV 314

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             + + Y  + +   +Q W+ ++   G  +    T +++   ++ + +++  +  +    
Sbjct: 315 AFDAEKYEWVKDAAALQVWIDRIYARGYVAVDTETTSLNEMRAELVGVSLCVMAGQACYI 374

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                      +             ++ L+ LK   E++  LKIG N+KYD  +  R GI
Sbjct: 375 PLTHKGGAADDLFGDDALAEGQMDFEDCLAILKPMLEDDSILKIGQNMKYDAKIFKRVGI 434

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
           ++   +D MLMSY +++G + H +  +++++L +T    K +L + KS+I  D++   + 
Sbjct: 435 TVDPIDDTMLMSYAMNAGLNRHSMDVLSEQYLGHTPIPIKPLLGAGKSAITFDRVPVEEA 494

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            ++A E++++ L+LW +L+P+L  +++  VYE +++P++ V+++ME+ GI++D+D L ++
Sbjct: 495 VKYAAEDADITLRLWQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGIKVDRDTLSRM 554

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S   ++ +  LE+ +Y+L+G KFN+ SP Q+G+ILF ++    G K KTG++  T  D+ 
Sbjct: 555 SNAFAQKMAGLEDELYELAGGKFNVGSPAQVGEILFDQMGLEGGKKGKTGKY-ATGADIL 613

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +    ++     +L+WRQLSK+KSTY D+L  HIN  T RVHT YS+    TGRL+S +P
Sbjct: 614 EDLATEHGFPGLVLDWRQLSKLKSTYTDALQTHINSETGRVHTSYSITGANTGRLSSTDP 673

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+TD G+KIR AFI+   K L++ DYSQIELRILAH+A I  L Q F +  DIH
Sbjct: 674 NLQNIPIRTDEGRKIREAFIADEGKVLVALDYSQIELRILAHVANIDALKQAFRDGHDIH 733

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            M A+E+F V +++++  +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF R
Sbjct: 734 AMTASEMFNVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFER 793

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPGI  Y++ T  F +++  VET+FGR+IH  EIN+ K       +RAAINAPIQG+AAD
Sbjct: 794 FPGIRTYMDDTVAFAKEHNRVETLFGRKIHTPEINA-KGPGAGFAKRAAINAPIQGTAAD 852

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + RRAMI +  ++    L  KMLLQ+HDELVFEV ++            ME A  P +  
Sbjct: 853 VIRRAMIRMDAAI--AHLPAKMLLQVHDELVFEVDKDAAHDLIAAAREVMENAANPVVKF 910

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V+  +   W E +
Sbjct: 911 DVPLVVDAGIGATWAEAH 928


>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
 gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
          Length = 920

 Score =  960 bits (2482), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/982 (34%), Positives = 539/982 (54%), Gaps = 80/982 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + LVDGSS++YRA++A P L+    G    A+ G  NM+ +LL    K+   S   VIF
Sbjct: 8   PIVLVDGSSYLYRAYHALPPLTNSK-GQATGAVKGVINMIRRLL----KDHPGSPSVVIF 62

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++IYP+YKA+RP +P+ L  Q+  +    +A G+P I I G EADD+I TY 
Sbjct: 63  DAKGKTFRDDIYPEYKAHRPPMPDDLREQIEPIHNIIKAMGLPLIIIDGVEADDVIGTYA 122

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A ++G  V + + DKD+ QLV+    L +T+ +  +D E V+ K+GIPP  ++   AL
Sbjct: 123 RQATEQGLDVIVSTGDKDMAQLVNKHITLVNTMNDTVMDEEGVLVKFGIPPSLIIDYLAL 182

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAET 239
            GD +DNIPG+ G+G KTA  LLQ  G+++ I  N  ++ +      K     + +  E 
Sbjct: 183 IGDKVDNIPGVAGVGEKTALGLLQGIGSIDEIFANLDKVPELPIRGAKTLSAKLEKEKEV 242

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +L  ++ DV +   +E L + + +   L+++ + +EF   +  +           
Sbjct: 243 AYLSYELATIKLDVDLPDSIESLAMVEPDSELLLTYFEDMEFKSWVEDLEKGG------- 295

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                           S L      ++SE   +           
Sbjct: 296 --------------------------------SGLPPPAVAVSSEAIAE----------P 313

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P     Y  ++   D  +W+ KLE     +F   T +++   ++ + ++ +       
Sbjct: 314 PTPPACVDYQLVLTEHDFSRWLTKLEAAPYFAFDTETTSLNYMEARVVGVSFAVEAGS-- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++            +      +L+ LK   E+    K+G N+KYD+ VL  +
Sbjct: 372 ------AAYVPFGHDYV--GVEQQLSEDWVLAQLKPLLEDSSRAKVGQNLKYDRNVLANH 423

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISD 535
           GI + G   D ML SYVL+S  + HD+ S+A+K+L       ++I       +  ++I  
Sbjct: 424 GIELNGIQFDTMLESYVLNSTATRHDMDSLARKYLDVGTIKFEDIAGKGAKQLTFNQIQL 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            Q   +A E++++ LQL  +L PKL   + L+ V++ ++  ++ V+S++E  G  + +DL
Sbjct: 484 QQAGPYAAEDADITLQLHEVLWPKLAAIDSLMSVFQTIELSLVPVLSRIERNGALVSRDL 543

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L + SAE+   L  LE+  ++L+GE FNLSSPKQLG ILF KL+ P   KT  G   T  
Sbjct: 544 LNKQSAELGTRLQQLEKEAHELAGEAFNLSSPKQLGHILFDKLELPVIKKTPKGAASTAE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L ++   D P+ + ++E+R LSK+KSTY D LP  I++ T R+HT Y  A T TGRL+
Sbjct: 604 EVLAELAL-DYPLPRILMEYRGLSKLKSTYTDKLPQMISEVTGRIHTSYHQAVTATGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T+ G+K+R+AF++    K+++ADYSQIELRI+AH+++   L + F   
Sbjct: 663 SSDPNLQNIPIRTEEGRKVRQAFVARDGYKIVAADYSQIELRIMAHLSQDNGLLKAFAEG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH+  AAE+FG+ +E+VS + RR AK INF +IYG+S F LA Q+ + R EA +YI  
Sbjct: 723 KDIHQATAAEVFGLELEQVSTEQRRRAKAINFGLIYGMSAFGLAKQIDVGRHEAQEYIDT 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+ +Y++ T+    + GYVET++GRR++  EIN+     R   ER AINAP+QG
Sbjct: 783 YFSRYPGVRDYMDNTRADAAERGYVETLYGRRLYLPEINASNGMRRQAAERTAINAPMQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI ++AM+ V + L +  +  +M++Q+HDELVFEV E  +      +   M  A + 
Sbjct: 843 TAADIIKKAMVDVDRWLLESDVDGQMIMQVHDELVFEVAEPSLDYLVSSVNDLMSGAVV- 901

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL V++ + +NW E +
Sbjct: 902 ---LDVPLIVDVGIGSNWDEAH 920


>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
          Length = 926

 Score =  960 bits (2481), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/983 (35%), Positives = 525/983 (53%), Gaps = 73/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +R+LV + T   +   +E     L  +      L        F   +  + +    + A 
Sbjct: 242 ARQLVTVETACELAPHVESFDASLATDGEGRDALRDIFAKYGFKTWLRELDSESAANGAL 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                         G   E  +                                      
Sbjct: 302 ATVAAAGAAPDPASGATAELPL-------------------------------------- 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+  +      +F   T ++D   ++ + ++ S      
Sbjct: 324 ----AAARNYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMLAQIVGLSFSVEPG-H 378

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +     DL     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 379 AAYVPLAHRGPDLPAQLPRD---------EVLAKLTPWLEDASRKKLGQHLKYDAQVLAN 429

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 430 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 488

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ LQL   L P++  E  L+ VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 489 LDKASEYAAEDADITLQLHRALYPQVAREPGLMRVYRDIEMPVSLVLRKMERTGVLIDSD 548

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S+EI+  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 549 RLSRQSSEIATRLVELEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 609 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 727

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 787

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 788 RYFLRYPGVAHYMEETRARAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 847

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVP+ E++   + +   M     
Sbjct: 848 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPDGELSVVREKLPEMMCGVA- 906

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 907 ---KLKVPLVAEVGVGENWEEAH 926


>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
 gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
          Length = 923

 Score =  960 bits (2481), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/983 (35%), Positives = 529/983 (53%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E           +     S  T+++                 
Sbjct: 294 ------------------EPAAAAGAAAAGAAPDPASGATAELPLATA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAEIVGLSFSVEPG-H 375

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 376 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLAN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 RLSRQSGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
 gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
          Length = 923

 Score =  960 bits (2481), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/983 (35%), Positives = 531/983 (54%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E           +     S  T+++                 
Sbjct: 294 ------------------EPAAAAGAAAAGAAPDPASGATAELPLATA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-- 374

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ ++ H   D       + E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 375 ------HAAYVPVA-HRGPDMPA-QLPSDEVLAKLTPWLEDAGKKKLGQHLKYDAQVLAN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 RLSRQSGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
 gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
 gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
          Length = 923

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/983 (35%), Positives = 529/983 (53%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E           +     S  T+++                 
Sbjct: 294 ------------------EPAAAAGAAAAGAAPDPASGATAELPLATA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-H 375

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 376 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLAN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 RLSRQSGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
 gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
          Length = 923

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/983 (35%), Positives = 529/983 (53%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E           +     S  T+++                 
Sbjct: 294 ------------------EPAAAAGAAAAGAAPDPASGATAELPLATA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-H 375

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 376 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLAN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 KLSRQSGEIATRLVTLEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens]
          Length = 939

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/994 (35%), Positives = 534/994 (53%), Gaps = 80/994 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FA
Sbjct: 6   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E+Y +YKANRP +P+ +  Q+  +  +  A G P + ++G EADD+I 
Sbjct: 61  VVFDAKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+    +D+E V +K+G+ PE+++  
Sbjct: 121 TLARSSAAADRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDY 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQE-YGNLENILINASRIK------QKKRRENILE 235
            AL GDS DNIPG+PGIG KTA+ LL    G L  +      +        K     + E
Sbjct: 181 LALMGDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLLIRGAKTLPAKLEE 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + E A LS +L  ++ DVP+ I L+ L +   +  +L      LEF   +N +       
Sbjct: 241 HKEMAFLSYQLATIKVDVPLDIGLDDLQMGPEDPAKLYELYTLLEFKSWLNDL------- 293

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                      D   K  + S+ ++     +       LF    
Sbjct: 294 ---------------------------DRDAKRQELSAAAEPAPAGD-------LFSAPA 319

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           ++ +       +Y  I++      W++KL+     +F   T  +DA  ++ + ++ +   
Sbjct: 320 EEEAPAAPAEAAYETILDQARFDVWLEKLKNAKLFAFDTETTGIDAQQAQLVGLSFAVQA 379

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   +I +     +D+         +L  LK   E+ + LK+G + K+D  +
Sbjct: 380 N-EAAYIPLTHSYIGVPEQLDRDT---------VLRALKPILEDPNKLKVGQHAKFDMNI 429

Query: 476 LHRY--------GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKS 523
           L           GI++RG   D ML SYVL+S  + HD+ S+AQK+L++T    ++I   
Sbjct: 430 LANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLNHTTVSFQDIAGK 489

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V+++
Sbjct: 490 GAKQLTFDQIALEQAGPYAAEDADVTLRLHQTLFEKLSAIPSLASVLTDIEIPLVPVLAR 549

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D DLL   S E+   +++LE   ++++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 550 IERQGAFVDADLLGIQSIELGNKMVALEREAFEIAGEEFNLGSPKQLGVILYEKLGLPVL 609

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  GQ  T  + L ++   D+ + K ++E R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 610 KKTAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTS 669

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A   TGRL+S +PNLQNIP++T  G++IR+AF++P   KL++ADYSQIELRI+AH++
Sbjct: 670 YHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLS 729

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F N+LD+H   AAE+F V + +V+   RR AK INF +IYG+   +L   + 
Sbjct: 730 RDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKLGKDIG 789

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +    A  YI  YF R+PG+ EY+++T+      G+VETIFGRR++  +INS K   R  
Sbjct: 790 VDTKTAKAYIDTYFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAA 849

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI ++AM++V   L    L  K++LQ+HDELV EV E+ +    +
Sbjct: 850 AERTAINAPMQGTAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQVRE 909

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            I   M +A      L VPL V + V NNW E +
Sbjct: 910 EIRVHMSEAA----KLDVPLLVEVGVGNNWDEAH 939


>gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62]
 gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62]
          Length = 932

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/978 (39%), Positives = 587/978 (60%), Gaps = 55/978 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + +      S  +H A
Sbjct: 6   KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYV-EGNAGSDVTHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI G+EADDIIA
Sbjct: 65  VIFDKGSHTFRNDMYDQYKANRDAMPEDLRPQMPLTRRATEAFNIACHEIAGYEADDIIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    + + G   TIIS+DKDLMQLV     ++D +K   I +E V +K+G+ P+++V +
Sbjct: 125 TLARQSREAGGRCTIISSDKDLMQLVGGGVEMFDAMKNRTIGVEGVEEKFGVGPDRVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L  A  IKQ KRR+++ +      L
Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLETLLDRAEEIKQPKRRQSLTDNRAQIEL 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  + P+   L+ L + D     L++FL  +EF  L  R+A T   +A +I   
Sbjct: 245 SKRLVQLDLNTPLEFTLDDLEVRDPVPEDLLAFLAEMEFRTLTTRIANTLGAEAPDIN-- 302

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                         + +     ++  + P+              
Sbjct: 303 -----------------------------DTPAAVAGAVDVPEAPE-------------- 319

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D Y  + +T  +Q W+ ++   G  +    T +++   ++ + I++     +     
Sbjct: 320 IDADQYEWVQDTDALQVWIDRIYERGYVAVDTETTSLNEMRAELVGISLCVKAGQ-ACYI 378

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
            +             D   +  + + + LS LK   +++  LKIG N+KYD  +  R G+
Sbjct: 379 PINHKEGANDDLFGSDKLAEGQMAEAVVLSMLKPMLQDDSILKIGQNMKYDAKIFARCGV 438

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
            +   +D MLMSY  ++G  +H + +++ + L +T    K +L + KS+I  D++  ++ 
Sbjct: 439 DVAPIDDTMLMSYAQNAGLHNHGMDTLSDRLLGHTPIPIKSLLGTGKSAITFDRVDVAEA 498

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            ++A E++++ L+LW  L+P+L V+ +  VYE L++P++ V+++ME+TGI++D+D L ++
Sbjct: 499 VKYAAEDADITLRLWQHLKPQLHVKGVTTVYETLERPLVPVLAEMEMTGIKVDRDTLSRM 558

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S   ++ +  LE  I++L+G  FN+ SPKQLG+ILF ++    G K KTG + T A  LE
Sbjct: 559 SNAFAQKMAGLEAEIHELAGRSFNVGSPKQLGEILFDEMGIEGGKKGKTGAYATGADVLE 618

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +   ++ +   +L+WRQLSK+KSTY D+L NHIN  T RVHT YS+A   TGRLAS +P
Sbjct: 619 DLAI-EHELPGRVLDWRQLSKLKSTYTDALQNHINAETGRVHTSYSIAGANTGRLASTDP 677

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G++IR AFI+   K L++ DYSQIELRILAH+A I  L Q F + +DIH
Sbjct: 678 NLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVADIPSLKQAFADGMDIH 737

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            M A+E+F V +++++  +RR AK INF +IYGIS F LA  LRIPR EA  +I RYF R
Sbjct: 738 AMTASEMFDVPLDQMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRFEAQGFIDRYFER 797

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPGI  Y++ T  F +++GYV+T+FGR+I+  EI + K       +RAAINAPIQG+AAD
Sbjct: 798 FPGIRTYMDDTVAFAKEHGYVQTLFGRKINTPEIGA-KGPQAGFAKRAAINAPIQGTAAD 856

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + RRAM+ +  ++ D     KMLLQ+HDEL+FEV         +     ME A +P + L
Sbjct: 857 VIRRAMVRMPDAIADQP--AKMLLQVHDELLFEVENGAQEKLIETARDVMENAAMPAVKL 914

Query: 959 RVPLKVNIKVSNNWQEEN 976
            V L  +     NW E +
Sbjct: 915 DVTLTADAGEGQNWAEAH 932


>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
 gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
          Length = 923

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/983 (35%), Positives = 531/983 (54%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E           +     S  T+++                 
Sbjct: 294 ------------------EPAAAAGAAAAGAAPDPASGATAELPLATA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-- 374

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ ++ H   D       + E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 375 ------HAAYVPVA-HRGPDMPA-QLPSDEVLAKLTPWLEDAGKKKLGQHLKYDAQVLAN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 KLSRQSGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
 gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
          Length = 918

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/983 (36%), Positives = 529/983 (53%), Gaps = 77/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L  K +  P  AI G  NML +L     K+  A + A +
Sbjct: 2   KTLLLVDGSSYLYRAFHAMPDLRNKQN-EPTGAIQGVLNMLRRL----HKDYPADYSACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++IYP+YKANR  +P+ L  Q+  +  A QA G P I   G EADD+I   
Sbjct: 57  FDAKGKTFRDDIYPEYKANRASMPDDLRLQIEPLHTAIQAMGWPLIVEDGVEADDVIGAL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
              AE+EG  V I + DKD+ QLV+    + +T+++      E +D   V  K+G+PP  
Sbjct: 117 AKQAEREGMRVIISTGDKDISQLVNEHITVVNTMRDAFRKTDEVLDPAGVEAKFGVPPSL 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           MV    L GDS DN+PG+  +G KTA   L +YG+LENI+ NA +I      EN+ +   
Sbjct: 177 MVDYLILIGDSSDNVPGVEKVGPKTAVKWLTQYGSLENIVANADQITG-VVGENLRKALP 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               +R+L+ +R DV I   LE L     +  +LI      EF  L   +          
Sbjct: 236 WLPTARELITIRCDVGIQESLEDLAPRPQDREKLIELFDRFEFKTLRRELD--------- 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                              L+   ++        +         
Sbjct: 287 -----------------------------------LAVPAAQAPLPAMAAQPAGTSADLF 311

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   +    +  I++   +Q+W+ K+ +     F   T ++D   +K + ++ S    + 
Sbjct: 312 AAAGVTTRQFETILDEASLQRWLDKISSAALVCFDTETTSLDPLTAKLVGMSFSIKAGE- 370

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L+                 L+ +K   EN    K+G N+KYDK VL  
Sbjct: 371 -------AAYLPLTHDYP--GAPDQLPFAATLARIKPLLENPAIKKVGQNLKYDKHVLAN 421

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI + G   D +L SYVL+S R+ H +  +A + L     T +++       +   +++
Sbjct: 422 HGIVLNGIAHDTLLQSYVLESHRT-HGMDDLAMRHLGVQTITYEQVAGKGAKQVSFSQVA 480

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V LQL   L P++  + KL  VY +++ P++D++  +E  G+ ID D
Sbjct: 481 LEQASEYAAEDADVTLQLHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDND 540

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L + S EI + L++LE+  Y+L+G+ FNL SPKQL +ILF KL      KT +G    T
Sbjct: 541 MLNRQSHEIGQKLMALEQQAYELAGQPFNLGSPKQLQEILFGKLGIKPLKKTPSGTPS-T 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +D+ Q    D P+ K +LE+R L+K+KSTY D LP  IN  T RVHT YS A  +TGRL
Sbjct: 600 DEDVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVAVTGRL 659

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++T  G++IR AF++P    ++SADYSQIELRI+AH+++   L   F  
Sbjct: 660 SSSDPNLQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQDDGLLTAFAA 719

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV  + VS + RR+AK INF +IYG+S F LA  L I R  A +YI+
Sbjct: 720 GEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLAQNLGIERQAAQNYIE 779

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y++ T+   +  GYVET FGRR+   EINSP    R   ERAAINAP+Q
Sbjct: 780 RYFTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWVPEINSPNGMRRAGAERAAINAPMQ 839

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + AMI+V   LE  KLATK+++Q+HDELV EVP+ E+    + +   M+    
Sbjct: 840 GTAADLIKLAMIAVQGWLESEKLATKLIMQVHDELVLEVPDNELALVKEKLPQLMQDVA- 898

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL   + V +NW+  +
Sbjct: 899 ---KLDVPLLAEVGVGSNWEAAH 918


>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
 gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
          Length = 924

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/984 (38%), Positives = 552/984 (56%), Gaps = 68/984 (6%)

Query: 1   MQKEN--HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M  +   HL LVDGS FI+RAF+A P ++   DG PVNA+ GF NML +LL+    E   
Sbjct: 1   MSSDKQVHLILVDGSGFIFRAFHALPPMT-SPDGTPVNAVYGFSNMLSRLLR----EHAG 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AVIFD    TFRN++Y +YKA+RP+ PE L PQ  LVR AT AFG+PA+E  G+EAD
Sbjct: 56  THLAVIFDAGRHTFRNDLYSEYKAHRPEPPEELRPQFSLVRDATAAFGVPALEEAGWEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA Y       G   TI S+DKDLMQL+ P   + D +K   I  + V  K+G+ P++
Sbjct: 116 DLIAAYARKVTDAGGQCTIYSSDKDLMQLIRPGVMMMDPIKNRPIGEKEVEAKFGVSPDR 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  +QAL GD +DN+PG+PGIG KTA+ L+ EYG+L+ IL  A  +K  +RR+N+L +A+
Sbjct: 176 VAQVQALIGDPVDNVPGVPGIGPKTASALMAEYGSLDGILAGAEGMKASRRRDNLLAHAD 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            ARLS +LV LR D P   PL  L+  D +  RL ++L  + F+ L+ R+          
Sbjct: 236 MARLSLELVTLREDAPCPEPLSALVCCDVDMERLGAWLAEMGFSSLLQRMGLK------- 288

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                               +    +I++   P  +        
Sbjct: 289 ------------------------------------AKPRPRISAHAHPAAVAEPEGALP 312

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +   Y  + + + ++QWV++  T G  +    TD +D   +  + I+++    + 
Sbjct: 313 PIPTEDYGPYETVTDPEVLRQWVEQARTSGVCAVDTETDGLDPLTAPLVGISLAPQCGR- 371

Query: 419 DTSFKVETIFIDLSVHTSQ-DSTG-KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                    +I L       DS G         L  L+  F +   LK+  N K+D LVL
Sbjct: 372 -------ACYIPLGHQVDLMDSLGTPQMPVGTALEILEPLFADPSVLKVFQNAKFDLLVL 424

Query: 477 HRYG-ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            + G +     +D ML+SY   +G+    +  +++  L +      E+  + ++ +   +
Sbjct: 425 TQAGSVQPAPIDDTMLISYAQSAGQHGQGMDELSRLTLDHSPIPYDEVTGTGRNRVVFSQ 484

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  ++   +A E+++V L+LW +LRP+L   + L +YE +++P+I +++ ME  GI +D 
Sbjct: 485 VDIARATPYAAEDADVTLRLWQVLRPRLRTSRALALYEEMERPLIPILADMERAGIAVDA 544

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L+ +S E ++ +  +E  I+ L+G +FN+ SPKQLG+ILF ++  P G +TK G W T
Sbjct: 545 DDLRAMSIEFAQRMGVIEAEIHKLAGREFNVGSPKQLGEILFDEMGLPGGKRTKAGAWGT 604

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            +  L+ +    + +   IL WRQL+K+KSTYAD+L N IN  T RVHT + +A T TGR
Sbjct: 605 DSSVLQDLADQGHDLPARILAWRQLAKLKSTYADALLNQINPATGRVHTSFQMAVTTTGR 664

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+T+ G +IRRAF++ P   L+SADYSQIELR+LA +A I  L + F 
Sbjct: 665 LSSNDPNLQNIPIRTEEGGRIRRAFVAAPGHLLVSADYSQIELRLLADVANIPALREAFA 724

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   A+E+FG+ +E + P  RR AK INF IIYGIS F L  QL IP  EA  YI
Sbjct: 725 LGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAFGLGRQLGIPPGEARGYI 784

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PGI +Y+E+ K   R  GYV T FGRR     I    +  RN  ER AINAP+
Sbjct: 785 DAYFARYPGIRDYMERVKAEARAKGYVTTPFGRRCWVPGIADKSAVRRNYAERQAINAPL 844

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG AADI +RAM+ +  +L D  L  +MLLQ+HDELVFEV +++    + ++   ME A 
Sbjct: 845 QGGAADIIKRAMVRIPAALSDAGLDGRMLLQVHDELVFEVRKDDADRLAALVRQVMESAA 904

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V      NW + +
Sbjct: 905 ----TLSVPLVVETGTGTNWADAH 924


>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
 gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
          Length = 957

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/998 (35%), Positives = 545/998 (54%), Gaps = 71/998 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLIAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDNLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAANDGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDVSDNIPGVKGVGGKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLVPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 EAADLSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDSNPVTQ 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N    +                         + + + S  +  + +EQT           
Sbjct: 301 NSAEKI------------------------PNNYQATSSVSQAVETEQT----------- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            ++  I+   Y  +   + +Q W++K+      +    TD++D+  +  + I+       
Sbjct: 326 FAKVDIDRSRYETVTTMEQLQSWIEKINQAKLVAVDTETDSLDSMSANLVGISFGLANGE 385

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFL 463
              +         +E    DL    ++       +           ++ LK   EN    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEPTEAETITSFELAKNQLNLTACVTELKPLLENADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +   +G+ + G   D ML SY L+S    H++  +A+++L +     +E
Sbjct: 446 KIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNST-GRHNMDELAERYLGHKTIEFEE 504

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMID 578
           I    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P+++
Sbjct: 505 IAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELDKAPTLVKLFNEIEMPLVE 564

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ I+ + L   SAEI + L  LE+ ++  +GE FNL+S KQL +ILFTKL 
Sbjct: 565 VLSRIERNGVLIEPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFTKLG 624

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN++T R
Sbjct: 625 LPVLKKTPKGAPSTNEEVLDELAGRGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGR 684

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELRI+
Sbjct: 685 VHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFITNKGYKIVAADYSQIELRIM 744

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+A    +   F    DIHR  AAEIFG+ +++V+ + RR AK INF +IYG+S F L+
Sbjct: 745 AHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLS 804

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I R++A  Y++RYF R+P + +++   +    + GYVET+FGRR++  EI S  + 
Sbjct: 805 NQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAM 864

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAP+QG+AADI + AMI + K++   +   KM++Q+HDELVFEV EE + 
Sbjct: 865 RRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEERVE 923

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             SQ+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 924 HYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDEAH 957


>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
          Length = 926

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/983 (35%), Positives = 524/983 (53%), Gaps = 73/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKRAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +    + A 
Sbjct: 242 ARKLVTVETACELAPHVESFDASLATDGEGRDALREIFSTYGFKTWLRELDSEPAANGAA 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
               +         G   E  +                                      
Sbjct: 302 AAAAMAGAAQDPAGGAPAELPLAMA----------------------------------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 327 -------RDYMTVQTWEQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFSVEPG-H 378

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 379 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDASKKKLGQHLKYDAQVLAN 429

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 430 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVRTIKYEDVAGKGAQQIGFDEVP 488

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 489 LEQASEYAAEDADITLQLHHALYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDTD 548

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S+EI+  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 549 RLGRQSSEIATRLIELEQQAYGLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 609 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  K++SADYSQIELRI+AHI++   L + F N
Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAN 727

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 787

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 788 RYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 847

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE E++   + +   M     
Sbjct: 848 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEGELSIVREKLPEMMCGVA- 906

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 907 ---KLKVPLVAEVGAGENWEEAH 926


>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
 gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
          Length = 923

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/983 (35%), Positives = 529/983 (53%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLMQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E           +     S  T+++                 
Sbjct: 294 ------------------EPAAAAGAAAAGAAPDPASGATAELPLATA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-H 375

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 376 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLAN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 RLSRQSGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1000 (36%), Positives = 551/1000 (55%), Gaps = 74/1000 (7%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K   N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         
Sbjct: 1   MAKIASNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLIAQVE----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           SH AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EAD
Sbjct: 56  SHIAVVFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A K+G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE 
Sbjct: 116 DVIGTLAVQAAKDGKDVLISTGDKDMAQLVNEHIMLINTMTNTLLDREGVIEKYGIPPEL 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRREN 232
           ++   AL GDS DNIPG+ G+G KTA  LLQ  G+++ I  N  ++        K     
Sbjct: 176 IIDYLALRGDSSDNIPGVKGVGEKTALALLQGIGSIQTIYQNLDKVEELSFRGAKTFAPK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +    E A LS  L  ++TDV +    + L     N   L++     EF K ++ V    
Sbjct: 236 LEAEKEMADLSYLLATIKTDVELEFRHDQLTTSPQNHDELVALFSQYEFKKWLSEV---- 291

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                              KG A        T  +  +  +  + T  + +E T      
Sbjct: 292 -------------------KGGANPV-----TQTEKVKTPNAYEVTQVVQNEPT------ 321

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                 ++  I+   Y  I  T  + +W++K++     +    TD++D+  +  + ++++
Sbjct: 322 -----FAKVDIDRSKYETITETVALNRWLEKMQAEKCIALDTETDSLDSMSANLVGVSLA 376

Query: 413 TLDQKDDTSFKVE-------TIFIDLSVHTSQ---DSTGKNTLTKEI-LSYLKKFFENEH 461
             + +      V            DL  +  +       KN L   + L+ LK   EN  
Sbjct: 377 LANGEACYIPLVHKTLVTTSAEQGDLFANEMETVGYELAKNQLNLTVCLAQLKPILENPE 436

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE- 519
             KIG NIKYD  V   +GI+++G   D ML SY L+S    H++  +A+++L +   E 
Sbjct: 437 IKKIGQNIKYDLTVFANHGINVQGVAFDTMLESYTLNST-GRHNMDDLAERYLGHKTIEF 495

Query: 520 --ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPM 576
             I    K+ +  D+I  S   E+A E+++V ++L  +L  +L  E  L+ +++ ++ P+
Sbjct: 496 EAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLWSQLAQEPALVKLFDEIELPL 555

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+S++E  G+ ID   LKQ S+EI + L  LE+ ++  +G  FNL+S KQL +ILF K
Sbjct: 556 VSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVHSEAGSVFNLASTKQLQEILFEK 615

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L  P   KT  G   T  + LE++    + + K ++E R LSK+KSTY D LP  IN +T
Sbjct: 616 LGLPILKKTPKGAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMINAKT 675

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+    K+++ADYSQIELR
Sbjct: 676 GRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQIELR 735

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH+A    + + F    DIHR  A+EIFGV +++V+ + RR+AK INF +IYG+S F 
Sbjct: 736 IMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGMSEFG 795

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ QL I R++A  Y++ YF+R+P + +++   K    + GYVET+ GRR++  EI S  
Sbjct: 796 LSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEKGYVETLLGRRLYLPEIKSSN 855

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           +  R   ER AINAP+QG+AADI + AMI + + ++ H    KM++Q+HDELVFEV E++
Sbjct: 856 AMRRKAAERVAINAPMQGTAADIIKIAMIGIDRVIQ-HSDEIKMIMQVHDELVFEVKEDK 914

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   S +I   MEKA    I L VPL   + V +NW E +
Sbjct: 915 VEHYSAVIKAEMEKA----IQLNVPLIAEVGVGDNWDEAH 950


>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4]
 gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4]
          Length = 918

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/983 (36%), Positives = 530/983 (53%), Gaps = 77/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L  K +  P  AI G  NML +L     K+  A + A +
Sbjct: 2   KTLLLVDGSSYLYRAFHAMPDLRNKQN-EPTGAIQGVLNMLRRL----HKDYPADYSACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++IYP+YKANR  +P+ L  Q+  +  A QA G P I   G EADD+I   
Sbjct: 57  FDAKGKTFRDDIYPEYKANRASMPDDLRLQIEPLHTAIQAMGWPLIVEDGVEADDVIGAL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
              AE+EG  V I + DKD+ QLV+    + +T+++      E +D   V  K+G+PP  
Sbjct: 117 AKQAEREGMRVIISTGDKDISQLVNEHITVVNTMRDAFRKTDEVLDPAGVEAKFGVPPSL 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           MV    L GDS DN+PG+  +G KTA   L +YG+LENI+ +A +I      EN+ +   
Sbjct: 177 MVDYLILIGDSSDNVPGVEKVGPKTAVKWLTQYGSLENIIAHADQITG-VVGENLRKALP 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               +R+L+ +R DV I   LE L     +  +LI      EF  L   +          
Sbjct: 236 WLPTARELITIRCDVGIQESLEDLAPRPQDREKLIELFDRFEFKTLRRELD--------- 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                              L+   ++        +         
Sbjct: 287 -----------------------------------LAVPAAQAPLPAMAAQPAGTSADLF 311

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   +    +  I++   +Q+W+ K+ +     F   T ++D   +K + ++ S    + 
Sbjct: 312 AAAGVTTRQFETILDEASLQRWLDKISSAALVCFDTETTSLDPLTAKLVGMSFSIKAGE- 370

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L+                 L+ +K   EN    K+G N+KYDK VL  
Sbjct: 371 -------AAYLPLTHDYP--GAPDQLPFAATLARIKPLLENPAIKKVGQNLKYDKHVLAN 421

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++ G   D +L SYVL+S R+ H +  +A + L     T +++       +   +++
Sbjct: 422 HGIALNGIAHDTLLQSYVLESHRT-HGMDDLAMRHLGVQTITYEQVAGKGAKQVSFSQVA 480

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V LQL   L P++  + KL  VY +++ P++D++  +E  G+ ID D
Sbjct: 481 LEQASEYAAEDADVTLQLHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDND 540

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L + S EI + L++LE+  Y+L+G+ FNL SPKQL +ILF KL      KT +G    T
Sbjct: 541 MLNRQSHEIGQKLMALEQQAYELAGQPFNLGSPKQLQEILFGKLGIKPLKKTPSGTPS-T 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +D+ Q    D P+ K +LE+R L+K+KSTY D LP  IN  T RVHT YS A  +TGRL
Sbjct: 600 DEDVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVAVTGRL 659

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++T  G++IR AF++P    ++SADYSQIELRI+AH+++   L   F  
Sbjct: 660 SSSDPNLQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQDDGLLTAFAA 719

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIFGV  + VS + RR+AK INF +IYG+S F LA  L I R  A +YI+
Sbjct: 720 GEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLAQNLGIERQAAQNYIE 779

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y++ T+   +  GYVET FGRR+   EINSP    R   ERAAINAP+Q
Sbjct: 780 RYFTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWVPEINSPNGMRRAGAERAAINAPMQ 839

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + AMI+V   LE  KLATK+++Q+HDELV EVP+ E+    + +   M+    
Sbjct: 840 GTAADLIKLAMIAVQGWLESEKLATKLIMQVHDELVLEVPDNELALVKEKLPQLMQDVA- 898

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL   + V +NW+  +
Sbjct: 899 ---KLDVPLLAEVGVGSNWEAAH 918


>gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
 gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
          Length = 929

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/971 (41%), Positives = 594/971 (61%), Gaps = 66/971 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +++HL+L+D S++++RAF+A P L+R  DGLPV A+AGFCNML+KLL++ + +   +HF
Sbjct: 7   TQDSHLYLIDASAYVFRAFHALPPLTRASDGLPVGAVAGFCNMLFKLLEDLKGKERPTHF 66

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A IFD    TFRNEIYP YKANR   PE L+PQ PLVR A  AF   AIE  GFEADD+I
Sbjct: 67  ACIFDASGDTFRNEIYPLYKANRSDPPEELVPQFPLVRRAAVAFAAHAIEQTGFEADDLI 126

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           ATY  +AE +G  VTI+S+DKDLMQL++    + D +K + +  + VI+K+G+ PE +V 
Sbjct: 127 ATYARLAEAKGARVTIVSSDKDLMQLITDKVLMLDPMKNKLLGRDDVIEKFGVGPEGVVD 186

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +Q+L+GDS+DN+PG PGIG KTAA LL EYG +E +L  A  IKQ KRRE ++ +A+  R
Sbjct: 187 VQSLSGDSVDNVPGAPGIGIKTAAQLLGEYGTVEALLERAGEIKQPKRRETLINFADQVR 246

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S++LV L+ DVP+ +P+E L ++D +   LI FL+ +EF  +  RV             
Sbjct: 247 VSKQLVQLKEDVPVVLPVEELAVQDPDPKVLIGFLEEMEFRTITRRVREQM--------- 297

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                          E E   +     +Q                               
Sbjct: 298 ---------------ELEGAIEAPAPEAQ------------------------------- 311

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P +  +Y  I + K ++ WV +    G  +    TD++D+     + ++++    +   +
Sbjct: 312 PFDVSAYACIRDLKTLEDWVARATAQGHVAVDTETDSLDSVSGGLVGVSLALAPGE---A 368

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             +    +D       D  G +   +    E L  LK   E+   LKIG NIKYD  V  
Sbjct: 369 CYIPLAHVDPEAKGDGDMFGADPPRQIKMAEALKVLKPMLEDPAVLKIGQNIKYDLSVFA 428

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           ++ I +   +D ML+S+ L++G   H +  +++++L +     K++  + K+     +++
Sbjct: 429 QHKIHVHPIDDTMLISFALNAGIHGHGMDDLSERYLGHKPITFKDVAGTGKAQKSFAQVA 488

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +  E+A E+++V L+LW  L+P+L  E++  VYE LD+P+  V+++ME  G+++D+D+
Sbjct: 489 LDKATEYAAEDADVTLRLWQALKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVKVDRDM 548

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++SA+ ++ + +LE   ++ +G  FN+ SPKQLG+ILF ++  P G KTKTG W T  
Sbjct: 549 LSRLSADFNQRMAALEAEAHEQAGRSFNIGSPKQLGEILFDEMNLPGGKKTKTGAWVTDG 608

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +    + + + I++WR LSK++STY ++L   INK+T RVHT Y +A   TGRL+
Sbjct: 609 DVLEGLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGAQTGRLS 668

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T+ G+KIR+AFI+     L+SADYSQIELRILAH+A I  L Q F++ 
Sbjct: 669 STDPNLQNIPVRTEEGRKIRQAFIAEEGNVLVSADYSQIELRILAHMADIPALKQAFKDG 728

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIH M A+E+FGV IE + P +RR AK INF IIYGIS F L  QL IP  EA  YIK 
Sbjct: 729 LDIHAMTASEMFGVPIEGMDPMVRRQAKAINFGIIYGISGFGLGRQLGIPSGEANQYIKT 788

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RFPGI +Y+++TK F R  G+V+T FGR+IH  +I S K   R+  ER AINAPIQG
Sbjct: 789 YFERFPGIRQYMDETKEFARATGFVKTAFGRKIHLPDIKS-KGPARSFAERQAINAPIQG 847

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI +RAMI + ++L +  L  +MLLQ+HDELVFE PE+E     +++  +M  A  P
Sbjct: 848 SAADIIKRAMIRMPEALAEAGLKAQMLLQVHDELVFECPEKEAEKLIKLVQKTMAAADGP 907

Query: 955 KINLRVPLKVN 965
            + L VPL V 
Sbjct: 908 SLRLSVPLVVE 918


>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
 gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
          Length = 923

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/983 (35%), Positives = 528/983 (53%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E           +     S  T+++                 
Sbjct: 294 ------------------EPAAAAGAAAAGAAPDPASGATAELPLATA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+  +      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAEIVGLSFSVEPG-H 375

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 376 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLAN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 RLSRQSGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
 gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
          Length = 928

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/985 (35%), Positives = 535/985 (54%), Gaps = 82/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N   LVDGSS+++RAF+  P L+    G    AI G  NML  L+    K+   +H AV
Sbjct: 14  NNPFILVDGSSYLFRAFHGMPPLTNSK-GQDTGAIYGVINMLRSLI----KQFSPTHMAV 68

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++IY +YKANRP +PE L  Q+  +    +A G+P I   G EADD+I T
Sbjct: 69  VFDAKGKTFRDDIYKEYKANRPSMPEELRSQIEPLHKIIRAMGLPIIVESGVEADDVIGT 128

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G    I + DKD+ QLV+    L +T+    +D + V++K+GIPPE ++   
Sbjct: 129 LADQASKLGIPTLISTGDKDMAQLVNEHVTLINTMNNHVMDPQGVVEKFGIPPELVIDFL 188

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G K+A  LLQ  G++ +I  N  +I        KK  + + EY 
Sbjct: 189 ALKGDKVDNIPGVPGVGDKSALGLLQGIGSINDIYENLDKIASLDFRGAKKMADKMREYE 248

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E ARLS  L  ++ DV +      L     +   L      L                  
Sbjct: 249 EQARLSYTLATIKLDVEMDCNPTSLSPVAADYSVLKELFAEL------------------ 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E K    +     +   +T Q  S SD+ S  +  Q            
Sbjct: 291 ------------EFKRWLKDATDALNNGAETEQAMSASDEPSPKSGVQV----------- 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I+    +++W  KL+     +F   T +++   ++ + ++ S  +  
Sbjct: 328 ---------TYQTILTQDALEKWFAKLQQADLFAFDTETTSLNYMQAELVGMSFSIEEG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           D     +   ++D           +      +L+  K   E+++  K+G ++KYDK VL 
Sbjct: 378 DAAYLPLAHDYVDAP---------QQLDRSAVLALFKPLLEDKNKAKVGQHLKYDKNVLA 428

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            Y I+++G   D ML SYVL+S  + HD+ S+AQ +L       ++I       +  ++I
Sbjct: 429 NYDINLQGIAYDTMLESYVLNSVATRHDMDSLAQYYLGLSTVHFEDIAGKGAKQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q  ++A E++++ L+L   +  KL    +L  V   ++ P+  V+++ME  G+ ID 
Sbjct: 489 PLDQAAQYAAEDADITLRLHNHIWQKLHQTPELASVLTEIEVPLATVLAKMEQFGVLIDS 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L Q S +++  ++ LE  +++L+GE+FNL S KQL +ILF KL  P   KT  G   T
Sbjct: 549 QKLSQQSQDLATRIMQLEREVHELAGEEFNLGSTKQLQEILFNKLSLPVLKKTPKGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L+++     P+ K ++E+R LSK+K+TY D LP  IN R+ RVHT Y  A T TGR
Sbjct: 609 SEEVLQELALT-YPLPKLLMEFRVLSKLKNTYTDKLPKMINPRSGRVHTSYHQAITATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G+++R+AFI+ P  K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 668 LSSTEPNLQNIPIRTEQGRRVRQAFIARPGYKIVAADYSQIELRIMAHLSQDEGLLKAFS 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAE+F V++ +V+ + RR+AK INF +IYG+S F L+ QL + R +A  Y+
Sbjct: 728 QGKDIHTATAAEVFNVSLTEVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSRHDAQHYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E ++   ++NGYV T+FGRR++  +IN+     R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLKYMEDSRIVAKENGYVSTVFGRRLYLPDINASNGLRRKGAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V   ++      T+M++Q+HDEL+FE+ E+ +      IV  MEKA
Sbjct: 848 QGTAADIIKKAMLKVDAWIDTLPSDQTRMIMQVHDELIFEIKEQNVENDKNTIVDLMEKA 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               ++L VPL V   V  NW + +
Sbjct: 908 ----VSLDVPLIVEAGVGENWDQAH 928


>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
 gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
          Length = 923

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/983 (35%), Positives = 527/983 (53%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E           +     S  T+++                 
Sbjct: 294 ------------------EPAAAAGAAAAGAAPDPASGATAELPLATA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+  +      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-H 375

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 376 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLAN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE   Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 RLSRQSGEIATRLVALEREAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
          Length = 926

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/983 (35%), Positives = 524/983 (53%), Gaps = 73/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKRAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +    + A 
Sbjct: 242 ARKLVTVETACELAPHVESFDASLATDGEGRDALREIFSTYGFKTWLRELDSEPAANGAA 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
               +         G   E  +                                      
Sbjct: 302 AAAAMAGAAQDPAGGAPAELPLAMA----------------------------------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 327 -------RDYMTVQTWEQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFSVEPG-H 378

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 379 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDASKKKLGQHLKYDAQVLAN 429

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 430 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVRTIKYEDVAGKGAQQIGFDEVP 488

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 489 LEQASEYAAEDADITLQLHHALYPQIAREPGLSRVYRDIEMPVSLVLRKMERTGVLIDSD 548

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S+EI+  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 549 RLGRQSSEIATRLIELEQQAYGLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 609 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 727

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 787

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 788 RYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 847

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE E++   + +   M     
Sbjct: 848 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPESELSIVREKLPEMMCGVA- 906

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 907 ---KLKVPLVAEVGAGENWEEAH 926


>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
 gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
          Length = 954

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/997 (35%), Positives = 535/997 (53%), Gaps = 72/997 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K  G P  A+ G  NML  L+         SH AV
Sbjct: 6   KNLLVLVDGSSYLYRAFHAFPPLTNKQ-GEPTGAMYGVLNMLKSLIAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLLSIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQASQAGKHVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G+++ I  N  ++        K     +    
Sbjct: 181 ALLGDSSDNIPGVKGVGEKTAIALLQGIGSMQAIYANLDKVAELSFRGAKTFAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           ETA LS  L  ++TDV + +  + L+ +     +L+      EF + +N V         
Sbjct: 241 ETADLSYLLATIKTDVALDVTYDQLVTQPQQRDQLVELFGRYEFKRWLNEVMN------- 293

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                          +  +  S +    N + T      ++   
Sbjct: 294 -----------------------------DANPVTQTSAEKIPNNYQATQAVSSEQKSAP 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             +  I+  +Y  + + +   +W+ KL+     +    TD +DA  +  + I+   L+  
Sbjct: 325 FVKISIDRTAYDCVNSPELFTKWLAKLQMAELVAVDTETDNLDAMQANLVGISF-GLENG 383

Query: 418 DDTSFKVET---IFIDLSVHTSQDSTGK----------NTLTKEILSYLKKFFENEHFLK 464
           +     +     I     V    +S  +               + L  LK   EN +  K
Sbjct: 384 EACYIPLAHKGKITQPTQVDLFGESEAELDEVEALLPNQLNKADCLVQLKPILENPNIRK 443

Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEI 520
           IG NIKYD  +  R GI ++G   D ML SY LDS    H++ ++A+++L +     +E+
Sbjct: 444 IGQNIKYDLTIFARNGIELQGVAFDTMLQSYTLDST-GRHNMDNLAERYLGHQTIPFEEL 502

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDV 579
               K  +  D+I   +  E+A E++ + ++L  LL  +L    +L+ ++E+++ P++ V
Sbjct: 503 AGKGKHQLTFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQIEMPLVSV 562

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +S++E  G+ ID   L   S EI + L  LE  ++  +GE FNL+S KQL +ILF KL  
Sbjct: 563 LSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEAGEVFNLASTKQLQEILFNKLGL 622

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KT  G   T  + LE++    + +   ++E R LSK+KSTY D LP  IN +T RV
Sbjct: 623 PILKKTPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRV 682

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+A
Sbjct: 683 HTSYHQAVTATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYSQIELRIMA 742

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+A    + + F    DIHR  AAEIFGV +E V+ + RR AK INF +IYG+S F LA 
Sbjct: 743 HLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYGMSEFGLAN 802

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I R++A  Y++ YF R+P + +++   +    + GYVET+FGRR++  EINS     
Sbjct: 803 QLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAAEKGYVETLFGRRLYLPEINSSNQMR 862

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAP+QG+AADI + AMI + +++ + +    M++Q+HDELVFEV  + +  
Sbjct: 863 RKAAERVAINAPMQGTAADIIKVAMIGIDQAVRNCE-DIAMIMQVHDELVFEVKADRVEH 921

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +Q+I   MEKA    I L+VPL   + V +NW E +
Sbjct: 922 YTQLIKAEMEKA----IELKVPLIAEVGVGSNWDEAH 954


>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
          Length = 926

 Score =  957 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/983 (35%), Positives = 524/983 (53%), Gaps = 73/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKRAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +    + A 
Sbjct: 242 ARKLVTVETACELAPHVESFDASLATDGEGRDALREIFSTYGFKTWLRELDSEPAANGAA 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
               +         G   E  +                                      
Sbjct: 302 AAAAMAGAAQDPAGGAPAELPLAMA----------------------------------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 327 -------RDYMTVQTWEQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFSVEPG-H 378

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 379 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDASKKKLGQHLKYDAQVLAN 429

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 430 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVRTIKYEDVAGKGAQQIGFDEVP 488

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 489 LEQASEYAAEDADITLQLHHALYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDSD 548

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S+EI+  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 549 RLGRQSSEIATRLIELEQQAYGLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 609 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 667

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 668 ASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 727

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 728 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 787

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 788 RYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 847

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE E++   + +   M     
Sbjct: 848 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPESELSIVREKLPEMMCGVA- 906

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 907 ---KLKVPLVAEVGAGENWEEAH 926


>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
          Length = 923

 Score =  957 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/983 (35%), Positives = 528/983 (53%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQRGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E           +     S  T+++                 
Sbjct: 294 ------------------EPAAAAGAAAAGAAPDPASGATAELPLATA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-H 375

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  +  +    K+G ++KYD  VL  
Sbjct: 376 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLGDAGKKKLGQHLKYDAQVLAN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 KLSRQSGEIATRLVTLEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
          Length = 923

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/983 (35%), Positives = 528/983 (53%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E           +     S  T+++                 
Sbjct: 294 ------------------EPAAAAGAAAAGAAPDPASGATAELLLATA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +   +    W+  +      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-H 375

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+     +D         E+L+ L  + E+    K+G ++KYD  VL  
Sbjct: 376 AAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLAN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 RLSRQSGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
 gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
          Length = 896

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/978 (36%), Positives = 537/978 (54%), Gaps = 88/978 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DGSS+ +RAF+A P L+    G P  AI G  NM+ K++++ + E      AV
Sbjct: 2   KPPLILIDGSSYFFRAFHALPPLTNSK-GQPTGAIYGVANMVKKIIKDYQPEE----IAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E YP+YKA+RP +P+ L  Q   +    QA G+P + I G EADD+I T
Sbjct: 57  VFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV+    L +T+    +DI+ V  K+G+ PE+++   
Sbjct: 117 LAKQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS+DNIPG+   G KTA   L EY  L+N+L +A+ I   K  E +        LS
Sbjct: 177 TLIGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEI-GGKIGEYLRASIPHLPLS 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KLV ++TD+ + + L  L+ +  +  +LI   + LEF                      
Sbjct: 236 KKLVTIKTDLELPLNLNQLMPKPADNEQLIKLTRELEFK--------------------- 274

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                       S L +   +  ++++P+++             
Sbjct: 275 ----------------------------SWLKELLQEEENQKSPKEMDAS---------- 296

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           NN SY  I   + +  W+ KLE          T  +D   ++ + I+++  ++       
Sbjct: 297 NNKSYEIITTHQQLNHWLNKLEQSQQFCIDTETTNLDVMQAELVGISLAVEEE------- 349

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I L+            + +E+L+ LK   EN    KIG NIKYD  VL  YGI++
Sbjct: 350 -NASYIPLAHTDGS----TQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYGITL 404

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
           +G   D ML SYVL+SG   HD+ S+A K+L Y     +++       +  D+I   +  
Sbjct: 405 KGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVEKAG 464

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+L   L P L  E L +V   ++ P++ V++ MEI G+ ID  +L++  
Sbjct: 465 IYAAEDADITLRLHHKLYPMLD-EPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHG 523

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           + + + + SLE+    L+G+ FNL+SPKQL +ILF + K P  AKT TGQ   TA+ + Q
Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPS-TAESVLQ 582

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D  +   ILE+R LSK+ STY D+LP  IN +T RVHT Y+ A   TGRL+S +PN
Sbjct: 583 ELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPN 642

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  DIH 
Sbjct: 643 LQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIHA 702

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+EIF  N+E VS + RR AK +NF +IYG+S F LA Q+ + R +A  YI  YF R+
Sbjct: 703 ATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYFRRY 762

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+E+T+    Q GYVET+FGRR++  EINS     +   ER AIN P+QG+AADI
Sbjct: 763 PKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTAADI 822

Query: 900 TRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++ M++V       K  + KM++Q+HDELVFEV +E +     II   ME+     + L
Sbjct: 823 IKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECHAIIHKLMEQ----TVKL 878

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V+I + +NW + +
Sbjct: 879 SVPLVVSIGIGSNWDDAH 896


>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
 gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
          Length = 935

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/994 (34%), Positives = 533/994 (53%), Gaps = 80/994 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E+Y +YKANRP +P+ +  Q+  +  +  A G P + ++G EADD+I 
Sbjct: 57  VVFDAKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+    +D++ V +K+G+ PE+++  
Sbjct: 117 TLARSSAAADRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVDGVKEKFGVAPEQIIDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQE-YGNLENILINASRIK------QKKRRENILE 235
            AL GDS DNIPG+PGIG KTA+ LL    G L  +      +        K     + E
Sbjct: 177 LALMGDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + E A LS +L  ++ DVP+ I L+ L +   +  +L      LEF   +N +       
Sbjct: 237 HKEMAFLSYQLATIKVDVPLDIGLDDLQMGPEDPAKLYELYTLLEFKSWLNDL------- 289

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                      D   K  + S+ ++     +       LF    
Sbjct: 290 ---------------------------DRDAKRQELSAAAEPVPAGD-------LFSAPA 315

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           ++ +       +Y  I++      W++KL+     +F   T  +DA  ++ + ++ +   
Sbjct: 316 EEEAPAAPAEAAYETILDQARFDVWLEKLKNAKLFAFDTETTGIDAQQAQLVGLSFAVQA 375

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   +I +     +D+         +L  LK   E+ + LK+G + K+D  +
Sbjct: 376 N-EAAYIPLTHSYIGVPEQLDRDT---------VLRALKPILEDPNKLKVGQHAKFDMNI 425

Query: 476 LHRY--------GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKS 523
           L           GI++RG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I   
Sbjct: 426 LANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQDIAGK 485

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E+++V L+L   L  KL  +  L  V   ++ P++ V+++
Sbjct: 486 GAKQLTFDQIALEQAGPYAAEDADVTLRLHQTLFDKLSAIPSLASVLTDIEIPLVPVLAR 545

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+   +++LE   ++++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 546 IERQGAFVDAELLGIQSIELGNKMIALEREAFEIAGEEFNLGSPKQLGVILYEKLGLPVL 605

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  GQ  T  + L ++   D+ + K ++E R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 606 KKTAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTS 665

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A   TGRL+S +PNLQNIP++T  G++IR+AF++P   KL++ADYSQIELRI+AH++
Sbjct: 666 YHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLS 725

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F N+LD+H   AAE+F V + +V+   RR AK INF +IYG+   +L   + 
Sbjct: 726 RDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKLGKDIG 785

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +    A  YI  YF R+PG+ EY+++T+      G+VETIFGRR++  +INS K   R  
Sbjct: 786 VDTKTAKAYIDTYFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAA 845

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI ++AM++V   L    L  K++LQ+HDELV EV E+ +    +
Sbjct: 846 AERTAINAPMQGTAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQVRE 905

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            I   M +A      L VPL V + V NNW E +
Sbjct: 906 EIRVHMSEAA----KLDVPLLVEVGVGNNWDEAH 935


>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 943

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/987 (36%), Positives = 559/987 (56%), Gaps = 55/987 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K + L LVDGSS++YRAF+A P L R   G P  AI G  NM+ +    +R E  A H
Sbjct: 1   MTK-HRLLLVDGSSYLYRAFHAMPDL-RNGAGEPTGAIYGMVNMMRR----ARSELKADH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+E+Y +YKA+R  +PE L+ Q+  +    +A G P + + G EADD+
Sbjct: 55  IACVFDAKGKTFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKAMGWPVLMVSGVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A + G+   I + DKDL QLV+P+  L +T+  EK+DIE VI+K+G+PPE +V
Sbjct: 115 IGTLACQATEAGWETIISTGDKDLAQLVNPSVTLINTMTNEKLDIEGVIEKFGVPPELIV 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              ++ GD++DN+PG+P  G KTA   L E+GNL+N++ NA ++K     EN+       
Sbjct: 175 DYLSIIGDTVDNVPGVPKAGPKTANKWLAEFGNLDNLMANADQVKG-VVGENLRASLTWL 233

Query: 241 RLSRKLVMLRTDVPITIPL---EHLILEDCNGPRLISFLKALEFTKLINRVATTYD--CD 295
             +R+L+ ++TD  ++  L   + L  +  +   L    +   F   +  V    +   D
Sbjct: 234 PQARQLITVKTDCDLSPHLPGLDDLHEKSEDAALLRELFERYAFKTWLRDVEKQLNNPSD 293

Query: 296 AANIEPVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
             +   V  D+  +     + ET+       I T+    L+ QTS +             
Sbjct: 294 GGSGAAVTFDLAGSPITNSSSETDSGELKRVIATAPTKGLTQQTSDLQDA---------- 343

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y  +V+ + +++W++K+E     +    T ++DA  ++ + I++S  
Sbjct: 344 ---------IERHYECVVDEESLERWMKKIEAAELTAVDTETTSLDALAAELVGISLSVK 394

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             +          +I ++    +         + +L  +K + E+   LK+G N+KYD  
Sbjct: 395 PGE--------ACYIPVAHRNGE----AQLSRELVLKRMKSWLESSSHLKVGQNLKYDIH 442

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPI 530
           +   Y I + G   D +L SYVL+S    H++ S+A++ L       +E+       I  
Sbjct: 443 IFANYDIHLEGIAFDTLLESYVLESH-LPHNMDSLAERHLGLKTIRYEEVCGKGVHQIGF 501

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQ 589
           D++       +A E++++ L+L L L P++     LL+VYE+++ P + V+  ME  GI+
Sbjct: 502 DQVDLQIATNYAAEDADITLRLHLELWPQIQASPGLLYVYEKIEMPAMLVLGIMERNGIR 561

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID  LL +   ++ K LL LE  I+ L+G+ FN+ SPKQ+ +ILF +L+ P   KT +G 
Sbjct: 562 IDSALLAKQGQQVGKRLLELEGEIHRLAGQPFNIQSPKQIAEILFGQLELPIVKKTPSGA 621

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L+++   D P+   IL++R L+K+ STY + LP   + +T R+HT +S A+ +
Sbjct: 622 PSTDEEVLQKL-AEDYPLPARILDYRSLAKLMSTYIEKLPRMADPKTGRIHTNFSQATAV 680

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS +PNLQNIP++T+ G++IR AFI     KL+SADYSQIELRI+AHIA+   L  
Sbjct: 681 TGRLASSDPNLQNIPVRTEEGRRIREAFIPADGCKLLSADYSQIELRIMAHIAEDENLLT 740

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   D+H+  AAEIFG+ ++ V+ + RR+AK INF +IYG+S F LA  L I R+ A 
Sbjct: 741 AFKEGKDVHQATAAEIFGIPLDDVNSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQ 800

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +YI +YF R+PG+ +Y+E+T+   R+NGYVET+FGRR+   EI       R   ERAAIN
Sbjct: 801 NYIAKYFDRYPGVAQYMERTRLEARENGYVETVFGRRLWLPEIKGSNGPRRQGAERAAIN 860

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AAD+ + AMI+V   LE  +L TKMLLQ+HDELVF+VP +EI      +   M 
Sbjct: 861 APMQGTAADLIKLAMIAVEDWLEKEQLKTKMLLQVHDELVFDVPLDEIDLLQAKLPDLMC 920

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
                   L+VPL V+I + +NW+E +
Sbjct: 921 HVA----QLKVPLVVSIGIGDNWEEAH 943


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/981 (37%), Positives = 548/981 (55%), Gaps = 85/981 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K + L L+DGSS+++RAF+A P L+    G P  A+ G  NML KLL   +      +
Sbjct: 1   MVKNSVLILIDGSSYLFRAFHALPPLTTSK-GQPTGAVYGVINMLRKLLDEHQPH----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD    TFR+E++  YKA+RP +PE L  Q+P +    +A G+P + ++G EADD+
Sbjct: 56  VAVIFDAKGKTFRDELFEQYKAHRPPMPEELACQIPPLHDLIRALGLPLLCVEGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +     I S DKDL QLV+    L ++  + K+D   V  K+ + PE++V
Sbjct: 116 IGTLAQQASGQHLETLISSGDKDLAQLVNHHVSLVNSTNQSKLDPAGVKAKFNVSPEQIV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD IDNIPGIPGIG KTAA LL +Y +L+ I+ +A  IK  K  EN+  +    
Sbjct: 176 DYLALVGDPIDNIPGIPGIGPKTAAKLLDQYHDLDQIMAHAQEIKG-KVGENLRLHLAQL 234

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L+R+L  +R      +PLE                       L  +       D   + 
Sbjct: 235 PLARQLATVRR----DLPLE-----------------------LGPKDLQCQPPDIPTLR 267

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            +   +         +E E DR ++  TS  SS S                         
Sbjct: 268 ELYGTLEFKTWLRELLEKEKDRASSPNTSTDSSPS------------------------- 302

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  +++ +  ++WV++LET    +F + T+++D   ++ + ++ +   ++   
Sbjct: 303 -------YETVLSEESFERWVKRLETAELFAFDLETNSLDYIEAEIVGLSFAIKPKE--- 352

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L+     D+       + +L+ L+   ++ +  K+G N+K+D+ VL  YG
Sbjct: 353 -----AAYVPLAHDY--DAAPLQLAREGVLARLQPLLQDSNRGKVGQNLKFDRNVLANYG 405

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           I + G   D ML SYVL S  S H++ S+A K+L     + +E+       +P +++   
Sbjct: 406 IELEGIRHDSMLESYVLHSTASRHNMDSLALKYLQRSTISYEEVAGKGAKQLPFNQVPID 465

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E++++ LQL     P+L  E+ L  +Y+ L+ P+I V+S+ME  G+QID   L
Sbjct: 466 KATRYAAEDADICLQLHHYFWPRLQQEEALCRLYQELEIPLIPVISRMERNGVQIDATQL 525

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K  SAE++  L  +E+  ++L+GE FNL+SPKQ+  IL+ KLK P   KT TGQ  T   
Sbjct: 526 KAHSAELTARLEKIEQEAFELAGEPFNLASPKQIQAILYDKLKLPITRKTPTGQPSTAET 585

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++   D P+ + +LE+R LSK+KSTY D LP  +N RT RVHT Y  A T TGRL+S
Sbjct: 586 VLQELAL-DYPLPQLLLEYRALSKLKSTYTDRLPLQVNPRTGRVHTSYHQAVTATGRLSS 644

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI++  G++IR+AFI+PP   L++ADYSQIELRI+AH++    L   FE   
Sbjct: 645 SDPNLQNIPIRSAEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAFEAGE 704

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH+  AAEIF   +E V+P+ RR AK INF +IYG+S   LA QL I RS A  YI+RY
Sbjct: 705 DIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSAHGLAQQLGISRSAAQHYIERY 764

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           FHR+PG+  Y++      RQ GYVET+FGRR++  EI+S ++  RN  ER AINAP+QG+
Sbjct: 765 FHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQAQRRNQAERMAINAPMQGT 824

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAM+   + L+      +M++Q+HDELVFEV E E+ T +  I  +M  A    
Sbjct: 825 AADIIKRAMLRADQWLQKQGSNARMIMQVHDELVFEVAEAELDTTTAAIRENMAGAA--- 881

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             ++VPL V +    NW E +
Sbjct: 882 -QIKVPLIVEMGSGANWDEAH 901


>gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179]
 gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179]
          Length = 925

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/985 (36%), Positives = 551/985 (55%), Gaps = 77/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           EN   LVDGSS++YRA++A   L      G P  A+ G  NML  LL    KE   +H A
Sbjct: 6   ENPFVLVDGSSYLYRAYHANFRLGLSNSAGEPTGAMYGVLNMLKSLL----KEVNPTHIA 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++  YK++RP +PE L  Q+  +    +A G+P + ++G EADD+I 
Sbjct: 62  VVFDAKGKTFRDEMFEQYKSHRPPMPEDLRQQIQPLHQMIEALGLPLLIVEGVEADDVIG 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  V I + DKD+ QLV     L +T+    +D E VI+K+ +PPE ++ L
Sbjct: 122 TLAKQASAAGREVLISTGDKDMAQLVDDKIMLINTMTNTLLDREGVIEKYEVPPELIIDL 181

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEY 236
            AL GDS DNIPG+P +G KTA  LLQ  G + +I     ++        KK  + +L  
Sbjct: 182 LALMGDSSDNIPGVPSVGNKTAIALLQGLGGIADIYSQLDKVTDLPIRGAKKLADKLLAG 241

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS KL  ++TDVP+ +  E L L+  N  +LI +    EF + +N          
Sbjct: 242 KEDADLSYKLATIKTDVPLDVTFEQLTLQPENRDQLIEYYARYEFKRWLN---------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                 E+  + T+ T+Q SS            T  K    R  
Sbjct: 292 ----------------------ELLNENTVSTAQNSS------------TMVKATPSREI 317

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + S   ++   Y  I+  + +QQW +KL      +    T++++   +K + ++ + L+ 
Sbjct: 318 QSSAIKVDRSRYQTILTEEQLQQWREKLSNASLFAIDTETNSLNYMQAKLVGLSFA-LEN 376

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     ++  ++D           +    K +L+ LK   E+ +  K+G N+KYD  +L
Sbjct: 377 GEAAYLPLQHHYLDCP---------QQLSWKTVLAALKTVLEDPNIKKVGQNLKYDLTIL 427

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            R+G+ ++G   D ML SY LDS    H++  +A+++L +     +++    K  +  D+
Sbjct: 428 ARHGVELQGVVYDTMLESYTLDST-GRHNMDDLAKRFLHHDTIHFEDLAGKGKGQLTFDQ 486

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I   +  E+A E+++V  +L  +L P+L     L+ ++  ++ P+  V+++ME  G+ ID
Sbjct: 487 IEIDKAAEYAAEDADVTFKLHQVLWPQLNQTPSLVKLFTEVELPLSQVLARMERNGVLID 546

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            DLL Q S EI+  L+ LE+  + L+G+ FNL+S KQL +ILF KL  P   KT  G   
Sbjct: 547 SDLLYQQSQEINARLIQLEQQAHQLAGQAFNLASTKQLQEILFGKLGLPVLKKTPKGAPS 606

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + LE++   ++ + K ++E R  SK+KSTY D LP  I+  T RVHT Y  A T+TG
Sbjct: 607 TNEEVLEEL-AYEHELPKLLVEHRGFSKLKSTYTDKLPQMIDPNTGRVHTSYHQAVTITG 665

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP +++ G+KIR+AFI+P   K+++ADYSQIELRI+AH++    L   F
Sbjct: 666 RLSSSDPNLQNIPTRSEEGRKIRQAFIAPQGFKVVAADYSQIELRIMAHLSADAGLAYAF 725

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            + LD+HR  AAE+F V +E+V+ Q R  AK INF +IYG+S F LA QL+IPR+EA  Y
Sbjct: 726 SHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAINFGLIYGMSAFGLARQLQIPRNEAQTY 785

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYFHR+PG+ +++   +   +Q GYVET+ GRR++  E+ S     R   ER AINAP
Sbjct: 786 IDRYFHRYPGVKQFMNDIQEKAKQQGYVETLLGRRLYLPELKSSNGMRRKAAERVAINAP 845

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI ++AMI + + + D     +M++Q+HDELVFEV E+++    +II   ME A
Sbjct: 846 MQGTAADIIKKAMIDIDRFIADKN-DIRMIMQVHDELVFEVKEDKVEYYEKIIKDMMENA 904

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL V +   +NW + +
Sbjct: 905 ----VKLSVPLIVEVNFGDNWDQAH 925


>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
 gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
          Length = 896

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/978 (36%), Positives = 535/978 (54%), Gaps = 88/978 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DGSS+ +RAF+A P L+    G P  AI G  NM+ K++++ + E      AV
Sbjct: 2   KPPLILIDGSSYFFRAFHALPPLTNSK-GQPTGAIYGVANMVKKIIKDYQPEE----IAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E YP+YKA+RP +P+ L  Q   +    QA G+P + I G EADD+I T
Sbjct: 57  VFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV+    L +T+    +DI+ V  K+G+ PE+++   
Sbjct: 117 LAKQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS+DNIPG+   G KTA   L EY  L+N+L +A+ I   K  E +        LS
Sbjct: 177 TLIGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEI-GGKIGEYLRASIPHLPLS 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KLV ++TD+ + + L  L+ +  +  +LI   + LEF                      
Sbjct: 236 KKLVTIKTDLELPLNLNQLMPKPADNEQLIKLTRELEFK--------------------- 274

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                       S L +   +  ++++P+++             
Sbjct: 275 ----------------------------SWLKELLQEEENQKSPKEMDAS---------- 296

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           NN SY  I   + +  W+ KLE          T  +D   ++ + I+++  +        
Sbjct: 297 NNKSYEIITTHQQLNHWLNKLEQSQQFCIDTETTNLDVMQAELVGISLAVEED------- 349

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I L+            + +E+L+ LK   EN    KIG NIKYD  VL  YGI++
Sbjct: 350 -NASYIPLAHTDGS----TQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYGITL 404

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
           +G   D ML SYVL+SG   HD+ S+A K+L Y     +++       +  D+I   +  
Sbjct: 405 KGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVEKAG 464

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+L   L P L    L +V   ++ P++ V++ ME+ G+ ID  +L++  
Sbjct: 465 IYAAEDADITLRLHHKLYPMLDKP-LRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHG 523

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           + + + + SLE+    L+G+ FNL+SPKQL +ILF + K P  AKT TGQ   TA+ + Q
Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPS-TAESVLQ 582

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D  +   ILE+R LSK+ STY D+LP  IN +T RVHT Y+ A   TGRL+S +PN
Sbjct: 583 ELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPN 642

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  DIH 
Sbjct: 643 LQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIHA 702

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+EIF  N+E VS + RR AK +NF +IYG+S F LA Q+ + R +A  YI  YF R+
Sbjct: 703 ATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYFRRY 762

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+E+T+    Q GYVET+FGRR++  EINS     +   ER AIN P+QG+AADI
Sbjct: 763 PKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTAADI 822

Query: 900 TRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++ M+++       K  + KM++Q+HDELVFEV +E +     II + ME+     + L
Sbjct: 823 IKKTMLAISSWEHSQKSPSAKMIMQVHDELVFEVRKEAVEECHAIIHNLMEQ----TVKL 878

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V+I   +NW + +
Sbjct: 879 SVPLVVSIGTGSNWDDAH 896


>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
 gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
          Length = 931

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/997 (34%), Positives = 524/997 (52%), Gaps = 90/997 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+++Y +YKANRP +P+ +  Q+  +  +  A G P + ++G EADD+I 
Sbjct: 57  VVFDAKGGTFRDDMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+    +D++ V +K+G+ PE+++  
Sbjct: 117 TLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVDGVKEKFGVAPEQIIDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQE-YGNLENILINASRIK------QKKRRENILE 235
            AL GDS DNIPG+PGIG KTA+ LL    G L+ +      +        K     + E
Sbjct: 177 LALMGDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA---TTY 292
           + E A LS +L  ++ DVP+ + L+ L L + +  +L+     LEF    + +       
Sbjct: 237 HKEMAFLSYQLATIKIDVPLDVGLDDLHLIEPDREKLLELYTLLEFKSWYDEIQRDTKRV 296

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           +   AN    V+D++      + +E                                   
Sbjct: 297 ELKTANEVAPVVDVSVEAVISVPVEA---------------------------------- 322

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                          YT I++      W++KL      +F   T  +DA  ++ + ++ +
Sbjct: 323 --------------IYTTILDQATFDLWLKKLNDAKLFAFDTETTGIDAHQAQLVGVSFA 368

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                +     +   +I +     +D+         +L  LK   E+   LKIG + K+D
Sbjct: 369 VQPH-EAAYIPLTHAYIGVPDQLDRDT---------VLRALKPLLEDPTKLKIGQHAKFD 418

Query: 473 KLVLHR--------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEI 520
             +L           GI+++G   D ML SYVL++  + HD+ S+A+K+L Y     ++I
Sbjct: 419 MNILANCAIDGDPAQGITVQGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVSFQDI 478

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDV 579
                  +  D+I+  Q   +A E+++V L+L   L  +L     L  V   ++ P++ V
Sbjct: 479 AGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQELHAQLAAIPSLASVLTDIEMPLVPV 538

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++++E  G  +D  LL   S E+   ++ LE   ++++GE FNL SPKQLG IL+ KL  
Sbjct: 539 LARIERQGALVDAQLLGVQSIELGNKMVELERQAFEIAGEAFNLGSPKQLGAILYEKLGM 598

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KT  GQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+
Sbjct: 599 PVLKKTGKGQASTAEDVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 658

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y  A   TGRL+S +PNLQNIP++T  G++IR+AF++P   KL++ADYSQIELRI+A
Sbjct: 659 HTSYHQAVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMA 718

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++K   L   F ++LD+H   AAE+F V + +V+   RR AK INF +IYG+   +L  
Sbjct: 719 HLSKDEGLMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINFGLIYGMGAQKLGK 778

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            + +    A  YI  YF R+PG+ EY+E+T+      GYVET FGRR++  +I+S K   
Sbjct: 779 DIGVDTKTAKAYIDVYFARYPGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNKPQE 838

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAP+QG+AADI ++AM+ V   L    L  K++LQ+HDELV EV E+ +  
Sbjct: 839 RAAAERTAINAPMQGTAADIIKKAMVRVDNWLTASGLDAKVILQVHDELVLEVREDLVAE 898

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            S+ +   M  A      L VPL V + V +NW E +
Sbjct: 899 VSEKVREHMSAAA----QLDVPLLVEVGVGDNWDEAH 931


>gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
 gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
          Length = 929

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/976 (34%), Positives = 519/976 (53%), Gaps = 52/976 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L R   G P  AI G  NML +L    R +  A + A +
Sbjct: 2   KTLLLVDGSSYLYRAFHAMPDL-RSPQGEPTGAIYGVLNMLRRL----RADYPADYSACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ YP+YKA+RP +P+ L  Q+  +     A G   + + G EADD+I T 
Sbjct: 57  FDAKGKTFRDDWYPEYKAHRPPMPDDLRAQIEPLHEVVAAAGWNILMVDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T+ A   G    + + DKDL QLV+P   L +T+  E +D   V+ K+G+ P ++V   A
Sbjct: 117 THQASSNGAHCIVSTGDKDLTQLVNPHVMLVNTMSNEVLDEAGVLAKFGVEPARIVDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTA   L +YG L+N+L +A  +      EN+    +     R
Sbjct: 177 LVGDTVDNVPGVAKCGPKTAVKWLTQYGTLDNLLAHADEV-GGAVGENLRAARDWLPQGR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++ DV +    + L     +  ++ +  +   F   +  V+               
Sbjct: 236 RLVTVKCDVALDRKFDELSAPAADIEKMKALFERFGFKSWLREVS--------------- 280

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                            R    +     + S  T  ++     Q+        L     +
Sbjct: 281 ----------YPSPASGRGAGGEGRSGDASSSLTPTLSQGARGQEQRQFEQPALPSTTND 330

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  I+    +  W+ KL      S    T  +D   ++ + I+ S            
Sbjct: 331 TSNYQTILTDAQLDAWLHKLMAAPLVSLDTETTGLDGMTAQLVGISFSIEAH-------- 382

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++ L+ H            +  L  LK + E+    K+G N+KYD+ +   +GI+  
Sbjct: 383 QAAYLPLAHHYP--GAPDQLGREHALQKLKHWLESPAHKKLGQNLKYDQHIFANHGIAFA 440

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G  ED +L SYVL+S +  H++ ++A + L     +  +++      I  D++       
Sbjct: 441 GIAEDTLLQSYVLESHK-PHEMGNLALRHLGLSTVSYADVVGKGAKQIGFDQVDLETATR 499

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E++++ LQL   L P+L   +L  VY +++ P+ +V+ +ME  G+ ID  +L + S 
Sbjct: 500 YAAEDADITLQLHQTLSPQLQG-RLDAVYRQIELPVREVLFKMERNGVLIDSAMLGRQSH 558

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+   L  +E+  ++ +G+ FNL+SPKQL +ILF KL+ P   KT +G   T  + L+++
Sbjct: 559 ELGLKLNEIEKQAFEAAGQPFNLNSPKQLSEILFDKLQLPVKKKTPSGTPSTDEEVLQEL 618

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K +LE+R ++K+KSTY D LP  +N +T RVHT Y+ A  +TGRLAS +PNL
Sbjct: 619 AL-DYPLPKLLLEYRGMAKLKSTYTDKLPQMVNAKTGRVHTSYAQAVAVTGRLASSDPNL 677

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+T  G++IR AFI+P   +++SADYSQIELRI+AH++    L + F    DIHR 
Sbjct: 678 QNIPIRTPEGRRIREAFITPAGSRIVSADYSQIELRIMAHLSGDEGLLKAFAAGEDIHRA 737

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+F V ++ VS + RR+AK INF +IYG+S + LA QL I  S A  YI  YF R+P
Sbjct: 738 TAAEVFSVALDAVSSEQRRYAKVINFGLIYGMSAYGLAAQLNIETSAAKQYIDLYFARYP 797

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y++ T+   +  G+VET FGRR+   EIN      R   ERAAINAP+QG+AAD+ 
Sbjct: 798 GVKRYMDSTREQAKAQGFVETWFGRRLWLPEINGANGMRRQAAERAAINAPMQGTAADLI 857

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI+V   LE  KLATK+++Q+HDELV EVP+ E+      +   M         L+V
Sbjct: 858 KLAMIAVQDWLETEKLATKLIMQVHDELVLEVPQGELARVKDKVRELMCNVA----ELKV 913

Query: 961 PLKVNIKVSNNWQEEN 976
           PL+V +    NW E +
Sbjct: 914 PLEVGMGEGGNWDEAH 929


>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
 gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
          Length = 918

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/977 (37%), Positives = 534/977 (54%), Gaps = 65/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L R   G P  AI G  +ML +L      +  A + A +
Sbjct: 2   PTLLLVDGSSYLYRAFHALPDL-RNSRGEPTGAIRGVLSMLRRL----ESDYKAEYRACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ YPDYKANRP +P+ L  Q+  +  A QA G P + + G EADD+I T 
Sbjct: 57  FDAKGKTFRDDWYPDYKANRPSMPDDLRVQVEPLHAAVQAEGWPLLSVDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  A + G+ V I + DKDL QLV P     +T+ EE +D   V  K+G+PPE++V   A
Sbjct: 117 TRQAVERGWEVVISTGDKDLTQLVRPGVRWVNTMSEEVLDEAGVTAKFGVPPERIVDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTA   L EYG L+ ++ +A ++   K  EN+ ++ E   L R
Sbjct: 177 LVGDTVDNVPGVEKCGPKTAVKWLTEYGTLDALVASADKV-GGKVGENLRKHLEFLPLGR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV + TD+P+ + L+ L   D +   L +  +  EF   +  +A     D         
Sbjct: 236 RLVTVATDIPLPVTLDELPARDDDREALKALYERFEFRSWLQDIA-----DGNRPGRSAP 290

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
             N       A+ETE                                       ++   +
Sbjct: 291 AGNGLRRNFAAVETEPVD---------------------------------PPQTEPGAH 317

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  +++      WV +LE     +F   T ++D   ++ + ++ + L Q +     +
Sbjct: 318 RVGYLTLLDWAQFDTWVARLEATPLVAFDTETTSLDPMSARLVGMSFA-LAQGEAAYLPL 376

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                D+          +     E+L+ LK + E++   K+G N+KYD  VL  +GI + 
Sbjct: 377 AHRGTDVP---------QQLPLDEVLARLKPWLESDRHAKLGQNLKYDAHVLLNHGIRLG 427

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQE 540
           G   D +L SYVL+S +  HD+ S+A++ L        E+       I  D+++      
Sbjct: 428 GITHDTLLESYVLESDK-PHDMDSLAKRHLGLTTIPYTEVCGKGAKQIGFDEVALDCAAA 486

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V L+L   L P++    +L  +Y  ++ P + V+ +ME TG+ ID  LL Q  
Sbjct: 487 YAAEDADVTLRLHETLWPQVEALPRLAALYRDVELPTLQVLFEMERTGVLIDPFLLAQHG 546

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + LL LE   + L+G+ FNL SPKQLG+ILF KL  P   KT TGQ  T    L Q
Sbjct: 547 EELGRRLLGLEAEAHVLAGQPFNLGSPKQLGEILFGKLALPVLKKTATGQPSTDEDVLTQ 606

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D P+ K +LE R L+K+KSTYAD LP  +N +T RVHT +S A+ +TGRLAS +PN
Sbjct: 607 L-AEDYPLPKLLLEHRSLAKLKSTYADKLPRMVNPKTGRVHTCFSQATAVTGRLASTDPN 665

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T  G++IR AFI+P    ++SADYSQIELRI+AH++    L + F    D+HR
Sbjct: 666 LQNIPIRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLLEAFAEGEDVHR 725

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FGV   +VS + RR+AK INF +IYG+S   LA  L I R  A  +I RYF R+
Sbjct: 726 ATAAEVFGVAPSEVSSEQRRYAKVINFGLIYGMSAHGLAKNLGIERGAAQAWIDRYFARY 785

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +Y+E+ K   +  GYVET+FGRR+H  +I + ++  R   ERAAINAP+QG+AAD+
Sbjct: 786 PGVADYMERIKAEAKDKGYVETVFGRRLHLPDIRAQQAGRRQAAERAAINAPMQGTAADL 845

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            ++AMI+V   L    L ++++LQ+HDELV EVP  E+ T    +   M         L 
Sbjct: 846 IKKAMIAVSGWLRASGLKSRLVLQVHDELVLEVPVAEVETLRAALPGLMGGVAA----LS 901

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V + V NNW E +
Sbjct: 902 VPLLVEVGVGNNWDEAH 918


>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
 gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/985 (35%), Positives = 537/985 (54%), Gaps = 74/985 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQK   L LVDGSS++YRAF+A P + R  +G P  A+ G  NML +L    R +  AS+
Sbjct: 1   MQK--TLLLVDGSSYLYRAFHALPDM-RNAEGAPTGALYGIINMLRRL----RNDYPASY 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+++YPDYKA R  +PE L  Q+  +  A +A G P + ++G EADD+
Sbjct: 54  VACVFDAKGKTFRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDV 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T +  A   G    + + DKD+ QLV+    L +T+  E +DI  V  K+G+PPE++V
Sbjct: 114 IGTLSVQATAAGLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIV 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              +L GD++DN+PG+   G KTA   L  YG L+ ++ NA +I      EN+    +  
Sbjct: 174 DYLSLIGDTVDNVPGVEKCGPKTAVKWLTAYGTLDGVMANADKISG-VVGENLRRALDWL 232

Query: 241 RLSRKLVMLRTDVPITIP----LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              R LV ++TD  ++      LE L ++  +   L        F   +  ++   +  A
Sbjct: 233 PQGRVLVTVKTDCDLSAHMSSILESLTMQPQDKDVLKELFTRYNFRTWLRELSDGAEAGA 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           +    V                    +   +   F++                       
Sbjct: 293 SKAPMV------------GASAAAALEAPAQGGLFAAAP--------------------- 319

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  ++    + QW+  +      +    T +++A  ++ + I++     
Sbjct: 320 --------KVEYETVLTDAQLDQWIATINAAELTAVDTETTSLEAMQAELVGISLCCEPG 371

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +      V   + D  V  S+         + +L  LK + E+    K+G ++KYD  + 
Sbjct: 372 R-AAYIPVAHNYQDAPVQLSR---------QHVLEKLKPWLEDASKPKLGQHLKYDSHIF 421

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDK 532
             YG+ + G   D +L SYV +S R  HD+ S+A + L   + T  E+     S I  ++
Sbjct: 422 ANYGVRLAGVKHDTLLESYVFESHR-PHDMDSLAARHLERKTITYAEVCGKGASQIGFNE 480

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           ++  +  E+A E++ V L L   + P++   +KL  +YE+++ P   V+ ++E  G+ ID
Sbjct: 481 VAIERATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLID 540

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + L Q S ++ K +L +E+  YDL+G+ FNL+SPKQLG+ILF KL+ P   KT +G   
Sbjct: 541 SERLGQQSHDLGKRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTASGAPS 600

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+++   D P+ K +L++R L+K+KSTY D LP  +N  T RVHT Y+ A  +TG
Sbjct: 601 TDEEVLQKL-AEDYPLPKVLLDYRGLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVAVTG 659

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+T  G++IR AF++P    ++SADYSQIELRI+AHI++   + + F
Sbjct: 660 RLSSNDPNLQNIPIRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAF 719

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            N+ DIHR  AAEIFG+  E+V  + RR+AK INF +IYG+S F LA+ L I R+ A  Y
Sbjct: 720 ANNEDIHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLASNLGIERAAAQMY 779

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I +YF RF G+  Y+++T+   +  GYVET+FGRR+   EINSP    R   ERAAINAP
Sbjct: 780 IDKYFMRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAP 839

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AAD+ + AMI+V   LE + L T+M++Q+HDELV EVP++E+    + +   M+  
Sbjct: 840 MQGTAADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEMVREKLPELMKNV 899

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL   + +  NW E +
Sbjct: 900 A----ELKVPLLAEVGIGKNWDEAH 920


>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
 gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
          Length = 915

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/984 (35%), Positives = 534/984 (54%), Gaps = 80/984 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +K+    LVDGSS+++RA++  P L R     G+   A+ G  NML  L++    E    
Sbjct: 3   EKKAPFILVDGSSYLFRAYH-VPQLQRMTNSSGMMTGAVFGVINMLKSLIKEYEPEQ--- 58

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             A++FD    TFRN++YP+YKANRP +PE L  Q+  +    +A G+P + I G EADD
Sbjct: 59  -MAMVFDAKGKTFRNDLYPEYKANRPPMPEDLRQQIEPIHEIVKAMGLPLLVIDGVEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPE 177
           +I T    A KEG    I + DKD+ QLVS    L +T+ +     D + VI+K+G+ PE
Sbjct: 118 VIGTLAKQACKEGRETLISTGDKDMAQLVSDHVTLINTMDKTNPITDRDRVIEKFGVKPE 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++   AL GD +DNIPG+   G KTA   L++YG+L+ ++ +A  I   K  EN+ E  
Sbjct: 178 QIIDYLALVGDKVDNIPGVDKCGPKTAVKWLEQYGSLQGVIDHADEI-GGKIGENLREAI 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +   LS +L  ++ D  +    E L +   +   L      +EF + +  V        A
Sbjct: 237 DRLPLSYELATIKLDCDLEFKPEQLNIGQPDLKELKKLYSDMEFRRWLTEVLKELGEGEA 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                   ++  +SE  P          
Sbjct: 297 G--------------------------------------DSAGDDSEDGP---------- 308

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   ++   Y  I+  K++ +W++KLE +   +F   T +++   ++ + ++ + LD  
Sbjct: 309 -SVALVDRSKYETILEQKELDKWIKKLEEVELFAFDTETTSLNYIEAELVGMSFA-LDNG 366

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++       +D         E+L  LK   E+E   K+G N+KYD  VL 
Sbjct: 367 EAAYLPVAHSYMGAPEQLERD---------EVLKQLKPLLESEKHKKVGQNLKYDMSVLA 417

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            Y I + G   D ML SY L+S  S HD+ ++A   L++     +EI    K+ +  D+I
Sbjct: 418 NYDIELAGIEFDTMLESYCLNSVASRHDMDTLALHHLNHVNIKFEEIAGKGKNQLTFDQI 477

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ ++L   L P+L   E    +++ ++ P++ ++S++E  G+ +D 
Sbjct: 478 EVEQAAPYASEDADITMRLHQKLWPELKQNEGPTQIFQHIEMPLLRILSKVERNGVLVDG 537

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL + S    K L  LE+  Y+++G++FNL SPKQL  I + +L  P   KT  GQ   
Sbjct: 538 KLLLEKSHLFEKRLKELEKEAYEIAGKEFNLGSPKQLQVIFYEELGLPILKKTPKGQPS- 596

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++ Q    D P+ K ILE R LSK+KSTY D LP  I+ +T RVHT Y  A   TGR
Sbjct: 597 TAEEVLQELALDYPLPKLILEHRGLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIAATGR 656

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPIKT+ G+ IR AFI+P   K+++ADYSQIELRI+AH+++   L + FE
Sbjct: 657 LSSTEPNLQNIPIKTEEGRSIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEGLLKAFE 716

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             LD+H   AAE+F V +++V+   RR+AK INF +IYG+S F LA Q+   R+ A DYI
Sbjct: 717 EGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLIYGMSAFGLAKQIDTDRNTAQDYI 776

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E TK      GYVET++GRR++  EI+S     R   ER AINAP+
Sbjct: 777 NTYFARYPGVETYMESTKEKAADLGYVETLYGRRLYLPEIHSKNGMRRKAAERTAINAPM 836

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM+ V K L+D K   KM++Q+HDELVFEV E+++  A + I   M+   
Sbjct: 837 QGSAADIIKLAMLEVDKWLKDVK-GIKMIMQVHDELVFEVEEDKLELAQKEIPKLMQSVA 895

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL  ++ V +NW E +
Sbjct: 896 ----ELSVPLIADVGVGDNWDEAH 915


>gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083]
 gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083]
          Length = 945

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/977 (39%), Positives = 571/977 (58%), Gaps = 54/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + +      S  +H A
Sbjct: 20  KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLQRYV-EGNAGSDVTHVA 78

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI+GFEADDIIA
Sbjct: 79  VIFDKGSHTFRNDMYDQYKANRDAMPEDLRPQMPLTRAATKAFNIACEEIEGFEADDIIA 138

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G   TIIS+DKD+MQLV     +YD +K+ +ID + V +K+G+ PE +V +
Sbjct: 139 TLARQAREAGGRCTIISSDKDMMQLVGDGVEMYDAMKQRRIDRDGVFEKFGVFPEGVVDV 198

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAALL+ EYG LE +L  A  IKQ KRR+ ++++     L
Sbjct: 199 QALAGDSVDNVPGAPGIGIKTAALLINEYGTLEELLDRAEEIKQPKRRQTLIDHRAQIEL 258

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  ++ +   L+ L + D     L+ FL  +EF  L  R++   D         
Sbjct: 259 SKRLVTLDGNMTLDFTLDDLEVRDPIADELLEFLAQMEFRTLTKRISEALD--------- 309

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                     +    +++   K  S   P+             P
Sbjct: 310 --------------------------APMPEIAEAPIKTGSLDAPE-----------AAP 332

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + + Y  + +   +  W+      G  +    T  ++   +  + I++ +   K     
Sbjct: 333 FDAEKYECVRDMGALHTWIDAAYARGYVAVDTETTGLNDMIADLVGISMCSEAGKACYIP 392

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     +  S +        +  ++ LK   E+   +KIG N+KYD  +  RYGI 
Sbjct: 393 LTHKDASTDDLFGSDELADGQLDLEIAIAALKPLLEDPSVMKIGQNMKYDAKIFARYGIE 452

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +   +D ML+SY   +G  +H + ++++++L +T    K +L + KS+I  D++      
Sbjct: 453 IAPIDDTMLISYAQHAGLHNHGMDALSERYLGHTPIPIKPLLGTGKSAITFDRVPIDHAT 512

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+LW  L+P L   +   VYE +++P++ V++QME  GI++D+D+L ++S
Sbjct: 513 PYAAEDADITLRLWQHLKPTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVLSRMS 572

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              ++ +  LE  I++++G  FN+ SP Q+G+ILF ++    G K K G++  T  D+ +
Sbjct: 573 NAFAQKMAGLEAEIHEMAGHSFNVGSPAQVGEILFDEMGLEGGKKGKNGKYS-TGADILE 631

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++ + + IL+WRQLSK+KSTY D+L +HIN  T RVHT YS+A   TGRLAS +PN
Sbjct: 632 DLATEHEMPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 691

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G++IR AFI+   K L++ DYSQIELRILAH+A I  L Q F +  DIH 
Sbjct: 692 LQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVAGIDSLKQAFRDGHDIHA 751

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           M A+E+F V +++++  +RR AK INF +IYGIS F LA  LRIPRSEA  +I RYF RF
Sbjct: 752 MTASEMFDVPLDEMTADVRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGFIDRYFDRF 811

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI EY+  T  F + N  VET+FGR IH   IN+ K       +RAAINAPIQG+AADI
Sbjct: 812 PGIKEYMNDTTAFAKANDRVETLFGRVIHTPNINA-KGPQAGFAKRAAINAPIQGTAADI 870

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAMI +  +++D     KMLLQ+HDEL+FEV ++ +    +     ME A  P + L 
Sbjct: 871 IRRAMIRMPDAIKDQP--AKMLLQVHDELLFEVEKDGVDQLIKTAKDIMENAADPVVKLD 928

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+     NW E +
Sbjct: 929 VPLIVDAGQGANWAEAH 945


>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
 gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
          Length = 940

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/990 (36%), Positives = 545/990 (55%), Gaps = 64/990 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M  +  L LVDGSS++YRAF+A P L R   G P      AI G  NM+  L    R+E 
Sbjct: 1   MTDKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPKSPATGAIRGMINMMTAL----RREV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A + A IFD P  TFR+++YP+YKANR  +P+ L  Q+  +    +  G P + +   E
Sbjct: 56  RADYAACIFDAPGKTFRDDLYPEYKANRSPMPDDLRSQIDPIHEVVKLMGWPVLCVPDIE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T    A ++G  V + S DKDL QLV     + DT+  +K D+  V  ++G+PP
Sbjct: 116 ADDVIGTLAKTAAQQGIEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             M+  Q L GD++DN+PG+  +G KTAA  L EYG+L+ ++  A+ +K  +  EN+ + 
Sbjct: 176 TLMIDYQTLVGDAVDNVPGVEKVGPKTAAKWLLEYGSLDALIERAAEVKG-QAGENLRKA 234

Query: 237 AETARLSRKLVMLRTDVPIT------IPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            +   LSR+LV +RTD  +         LE L +       L  F +   F  L+  +  
Sbjct: 235 LDKLPLSRQLVTIRTDCNLAAHVAGLPSLEGLPVGAPQTAELKPFYERFGFKSLVKSL-- 292

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
               +A  + P +++ N  +                 ++    L D+++++ + +     
Sbjct: 293 ----EALEVPPELIEENIKKQ---------MARGAAASADQGGLFDESAELGALE----- 334

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                   +  P +N  Y  I   +    W+ KLE    A+    T ++D   ++ + ++
Sbjct: 335 --------AASPASNLKYDTITTWEQFDAWLAKLEAAELAAIDTETTSLDEMVARIVGVS 386

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S               ++ L+ H   D+        E+L+ LK + EN    K+G +IK
Sbjct: 387 FSIEPGA--------AAYVPLA-HNYPDAPA-QLPFDEVLARLKPWLENPAKKKLGQHIK 436

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKS 526
           YD+ V   +GI ++G+  D ML SYVL++ R  H +AS+A++ L     + +++      
Sbjct: 437 YDRHVFANHGIEVQGYAHDTMLQSYVLEAHR-PHGLASLAERHLGRSGISYEDLCGKGAH 495

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            IP  ++  ++  E++ E+S+  L + L L P++  ++ L    +L+    + + ++E  
Sbjct: 496 QIPFSQVDIAKAAEYSCEDSDQTLDVHLALWPQIERDEKLRFIYQLEMDSSEALYRVERN 555

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID   L   S E+   +++LE+  Y+++G+ FNL SPKQ+G+I FTKL  P   KT 
Sbjct: 556 GVLIDAPTLAAQSHELGTRIMALEQEAYEIAGQPFNLGSPKQIGEIFFTKLGLPVVKKTP 615

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +G   T  + LE++   D P+   ILE R LSK+K TY D L    N RT RVHT Y+ A
Sbjct: 616 SGAPSTDEEVLEKL-AEDYPLPAKILEHRGLSKLKGTYTDKLGQLANPRTGRVHTHYAQA 674

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRL+S +PNLQNIPI+T  G+++R AFI+PP   + SADYSQIELRI+AHI+    
Sbjct: 675 VAVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAPPGSVIASADYSQIELRIMAHISGDES 734

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F   +D+HR  AAE+FG   ++VS + RR+AK INF +IYG+S F LA  L I   
Sbjct: 735 LLRAFREGIDVHRATAAEVFGATPDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIETK 794

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            AA YI RYF R+PG+  Y+++TK   ++ GYVET+FGRR++  EINSP    R   ERA
Sbjct: 795 AAASYIDRYFARYPGVKAYMDETKALAKEKGYVETVFGRRLYLPEINSPNGPRRGGAERA 854

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AAD+ + +MI V   L++ K AT+M++Q+HDELVFEVPE EI      I  
Sbjct: 855 AINAPMQGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDELVFEVPEAEIEWVRTEIPR 914

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M         L+VPL   I +  NW + +
Sbjct: 915 LMAGVA----ELKVPLLAEIGIGPNWDKAH 940


>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 896

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/978 (36%), Positives = 536/978 (54%), Gaps = 88/978 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DGSS+ +RAF+A P L+    G P  AI G  NM+ K++++ + E      AV
Sbjct: 2   KPPLILIDGSSYFFRAFHALPPLTNSK-GQPTGAIYGVANMIKKIIKDYQPEE----IAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E YP+YKA+RP +P+ L  Q   +    QA G+P + I G EADD+I T
Sbjct: 57  VFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV+    L +T+    +DI+ V  K+G+ PE+++   
Sbjct: 117 LAKQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS+DNIPG+   G KTA   L EY  L+N+L +A+ I   K  E +        LS
Sbjct: 177 TLIGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEI-GGKIGEYLRASIPHLPLS 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KLV ++TD+ + + L  L+ +  +  +LI   + LEF                      
Sbjct: 236 KKLVTIKTDLDLPLNLNQLMPKPADSEQLIKLTRELEFK--------------------- 274

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                       S L +   +  ++++P+++             
Sbjct: 275 ----------------------------SWLKELLQEEENQKSPKEMDAS---------- 296

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           NN SY  I   K +  W+ KLE          T  +D   ++ + I+++  ++       
Sbjct: 297 NNKSYEIITTHKQLNHWLNKLEQSQQFCIDTETTNLDVMQAELVGISLAVEEE------- 349

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I L+            + +E+L+ LK   EN    KIG NIKYD  VL  YGI++
Sbjct: 350 -NASYIPLAHTDGS----TQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYGITL 404

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
           +G   D ML SYVL+SG   HD+ S+A K+L Y     +++       +  D+I   +  
Sbjct: 405 KGIGYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVVKAG 464

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+L   L P L  E L +V   ++ P++ V++ ME+ G+ ID  +L++  
Sbjct: 465 IYAAEDADITLRLHHKLYPMLD-ESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHG 523

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           + + + + SLE+    L+G+ FNL+SPKQL +ILF + K P  AKT TGQ   TA+ + Q
Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPS-TAESVLQ 582

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D  +   ILE+R LSK+ STY D+LP  IN +T RVHT Y+ A   TGRL+S +PN
Sbjct: 583 ELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPN 642

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  DIH 
Sbjct: 643 LQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIHA 702

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+EIF  N++ VS + RR AK +NF +IYG+S F LA Q+ + R +A  YI  YF R+
Sbjct: 703 ATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYFRRY 762

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+E+T+    Q GYVET+FGRR++  EINS     +   ER AIN P+QG+AADI
Sbjct: 763 PKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTAADI 822

Query: 900 TRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++ M+++       K  + KM++Q+HDELVFEV +E +     II   ME+     + L
Sbjct: 823 IKKTMLAISSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECRAIIHKLMEQ----TVKL 878

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V+I   +NW + +
Sbjct: 879 SVPLVVSIGTGSNWDDAH 896


>gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
 gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
          Length = 924

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/977 (34%), Positives = 536/977 (54%), Gaps = 61/977 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLSNAQ-GEPTGALFGVVNMLRSTLKER-----PAYVAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y  YKANRP +P+ L  Q+  +    +A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYEQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +   VTI + DKD  QLV P   L +T+   ++D    V++K+G+  ++++ L A
Sbjct: 117 LQGVAQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++  A  +K  K  EN+    E   L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKG-KIGENLRAALERLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV +RTDV +      L L + + P L        FT+ +  +       A    P   
Sbjct: 236 ELVTIRTDVELEASPTTLALREQDVPELTELYARYGFTQALKELG------APLPAPTAA 289

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              T   +G A             + F+  S +     +         E           
Sbjct: 290 SEATPSLRGTA-------------AGFARGSAEAPAAGTLDPALAAPGE----------- 325

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  + +Q WV++L+     SF   TD +DA  ++ + I+++    K      V
Sbjct: 326 ---YETVLTAEQLQAWVERLQQADLISFDTETDALDAMRARLVGISLAVEPGK-AAYIPV 381

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +                  +++L  L+   ++    K+G + KYD  VL R+G+ ++
Sbjct: 382 GHDYPGAPP---------QLPMQQVLDALRPVLQDPAKKKLGQHGKYDLHVLRRHGVEVQ 432

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D ML S+VL+S  + HD+ S+A ++L Y     +++       IP  ++   +   
Sbjct: 433 GYHDDTMLESFVLNSTATRHDMDSLALRYLGYNTIKFEDVAGKGAKQIPFSQVGIDEASR 492

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L   L+P+L+ E  L  VY  ++ P++ V++ +E  G++ID   L++ S
Sbjct: 493 YAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTSIEANGVRIDTVELRRQS 552

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            ++S  +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 553 QDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPS-TNEEALE 611

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K++STY D LP  +N  T RVHT Y  +   TGRL+S +PN
Sbjct: 612 AIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAATGRLSSSDPN 671

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAFI+P   +L++ADYSQIELRI+AH+++   L   FE   D+HR
Sbjct: 672 LQNIPIRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHLSEDPGLVGAFEQGADVHR 731

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  +E+V+P  RR AK INF ++YG+S F LA  L I R +A DY+  YF R+
Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFSRY 791

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E+ +   R  GYVET+FGRR++ ++I++    +R   ERAAINAP+QG+AADI
Sbjct: 792 PGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAADI 851

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+ V + L D     +M+LQ+HDELVFE     +      +V  M +A      LR
Sbjct: 852 IKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEELRLQVVERMSQAA----KLR 907

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  + NNW E +
Sbjct: 908 VPLVVDTGIGNNWDEAH 924


>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
 gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
          Length = 924

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/977 (34%), Positives = 538/977 (55%), Gaps = 61/977 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLSNAQ-GEPTGALFGVVNMLRSTLKER-----PAYVAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y  YKANRP +P+ L  Q+  +    +A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +   VTI + DKD  QLV P   L +T+   ++D    V+ K+G+  ++++ L A
Sbjct: 117 LQGLAQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMDKFGVRADQIIDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++  A  +K  K  EN+    E   L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKG-KIGENLRAALERLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV +RTDV +      L L + + P L        FT+ +  +       A    P   
Sbjct: 236 ELVTIRTDVALDASPTTLALREQDVPELTELYTRYGFTQALKELG------APLPAPTAA 289

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              T   +G A             + F+  S +     +         E           
Sbjct: 290 SEATPSLRGTA-------------AGFARGSAEAPAAGTLDPALAAPGE----------- 325

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++ T+ +Q WV++L+     SF   TD +DA  ++ + ++++    +      V
Sbjct: 326 ---YETVLTTEQLQTWVERLQQAELISFDTETDALDAMRARLVGVSLAVEPGR-AAYIPV 381

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +                  +++L  L+   ++    K+G + KYD  VL R+G+ ++
Sbjct: 382 GHDYPGAPA---------QLPMQQVLDALRPVLQDPAKKKLGQHGKYDLHVLRRHGVDVQ 432

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D ML S+VL+S  + HD+ S+A ++L Y     +++       IP  ++   +   
Sbjct: 433 GYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQIPFSQVGIDEASR 492

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L   L+P+L+ E  L  VY  ++ P++ V++ +E  G++ID D L++ S
Sbjct: 493 YAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANGVRIDTDELRRQS 552

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            ++S  +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 553 QDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPS-TNEEALE 611

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K++STY D LP  +N  T RVHT Y  +   TGRL+S +PN
Sbjct: 612 AIAEQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQSGAATGRLSSSDPN 671

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++P   +L++ADYSQIELRI+AH+++   L + FE   D+HR
Sbjct: 672 LQNIPIRTEDGRRIRRAFVAPEGCQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHR 731

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  +E+V+P  RR AK INF ++YG+S F LA  L I R +A DY+  YF R+
Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFSRY 791

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E+ +   R  GYVET+FGRR++ ++I++    +R   ERAAINAP+QG+AADI
Sbjct: 792 PGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAADI 851

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+ V + L D     +M+LQ+HDELVFE     +      +V  M +A      LR
Sbjct: 852 IKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERMSQAA----KLR 907

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  + +NW E +
Sbjct: 908 VPLVVDTGIGSNWDEAH 924


>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 923

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/984 (35%), Positives = 525/984 (53%), Gaps = 79/984 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   R     +  AV+
Sbjct: 7   NPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSRYR----PTQMAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRNE+Y +YKA+RP +P+ L  Q+  +    +A GIP I I G EADD+I T 
Sbjct: 62  FDAKGPTFRNEMYQEYKAHRPPMPDDLRSQIAPLHRIIKALGIPLISIPGVEADDVIGTI 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  EG +V I + DKD+ QLV+    L +T+ +  +  E V  K+G+ PE ++ L A
Sbjct: 122 AIQAGNEGRSVLISTGDKDMAQLVNEHITLINTMTDTILGPEEVATKFGVGPELIIDLLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           + GD  DNIPG+PG+G KTA  +L   G +  +L     +        K     I + AE
Sbjct: 182 MMGDKADNIPGLPGVGEKTALAMLTGAGGVAKLLAEPDCVTDLGFRGAKTMAAKIRDNAE 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS KL  ++TDV +      L L + N   LI+    +EF + +  V          
Sbjct: 242 MLELSYKLATIKTDVTLEQDWHQLSLSEPNRDELIACYGEMEFKRWLAEVL--------- 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                D  S + ++    +   E  +  
Sbjct: 293 -------------------------------------DNKSPLGTKAAAPQANQETTESP 315

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   I    Y  ++   ++  W+ KL      +    T ++D   ++ + ++ +    K 
Sbjct: 316 AAAVIETQ-YHTLLTESELDAWLDKLSKAELIAVDTETTSLDYMQAELVGLSFAIEAGK- 373

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L               +  L+ LK   EN    K+G N+KYD  VL  
Sbjct: 374 -------AAYLPLGHDYP--GAPSQLPREATLAKLKPLLENPDIKKVGQNLKYDMSVLAN 424

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            GI ++G   D ML SYV +S  S HD+  +A K+L +     +EI       +  ++I+
Sbjct: 425 AGIQLKGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIA 484

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E++++ L+L   L P+L   E L  V+  L+ P+I+V+S +E  G+ ID  
Sbjct: 485 LEQAAPYAAEDADITLRLHQHLWPRLSKEEGLESVFTELELPLIEVLSDIERRGVLIDSM 544

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL Q S E+++ +  LE++ ++++GE FNLSS KQL ++ FTKL +P   KT  G    T
Sbjct: 545 LLGQQSEELARKIDELEQHAHEIAGEPFNLSSTKQLQELFFTKLGYPVIKKTPKGAPS-T 603

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+++      D P+ K ILE R L+K+KSTY D LP  IN RT RVHT Y  A+  TGRL
Sbjct: 604 AEEVLVELALDYPLPKIILEHRSLTKLKSTYTDKLPLMINGRTGRVHTSYHQANAATGRL 663

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T+ G++IR+AF++P  K++++ADYSQIELRI+AH+++   L + F  
Sbjct: 664 SSSDPNLQNIPIRTEEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGLLRAFAE 723

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+F V  E V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI 
Sbjct: 724 GKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQSYID 783

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PG+ +Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAAINAP+Q
Sbjct: 784 TYFKRYPGVLKYMEETRAMASEQGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQ 843

Query: 894 GSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G+AADI ++AMI++   ++ + +   +M++Q+HDELVFEV  ++     + +   M  A 
Sbjct: 844 GTAADIIKKAMIAIQHWIKTETQGEIQMIMQVHDELVFEVDADKADALKEKVCELMAAAA 903

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L VPL     + +NW + +
Sbjct: 904 ----SLDVPLLAEAGLGDNWDQAH 923


>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 942

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/984 (36%), Positives = 564/984 (57%), Gaps = 50/984 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K + L LVDGSS++YRAF+A P L R   G P  AI G  NM+ +    +R E  A H
Sbjct: 1   MTK-HRLLLVDGSSYLYRAFHAMPDL-RNGAGEPTGAIYGMVNMMRR----TRSELKADH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+E+Y +YKA+R  +PE L+ Q+  +    +A G P + + G EADD+
Sbjct: 55  IACVFDAKGKTFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKALGWPVLMVGGVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A + G+   I + DKDL QLV+ +  L +T+  EK+DIE V +K+G+PPE +V
Sbjct: 115 IGTLACQATQAGWETIISTDDKDLAQLVNSSVTLINTMTNEKLDIEGVKEKFGVPPELIV 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              ++ GD++DN+PG+P  G KTA   L E+G+L+N++ NA ++K     EN+    +  
Sbjct: 175 DYLSIIGDAVDNVPGVPKAGPKTANKWLAEFGSLDNLMANADQVKG-VVGENLRASLDWL 233

Query: 241 RLSRKLVMLRTDVPITIPL---EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             + +L+ ++TD  ++  L   + L  +  + P L    +   F   +  V       A 
Sbjct: 234 PQAHQLITVKTDCDLSPHLPGLDDLHAKSEDAPLLRELFERYAFKTWLRDVEKQLTSPAD 293

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               VV     T +   +  T  +R    +      +S  T  ++ E    +  +ER   
Sbjct: 294 KASEVV-----TFDLAGSPLTPSERGFDEEKKTRVIVSAPTKNLSQETRDSQDTIER--- 345

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  IV+   +++W++K+E+    +    T ++DAF ++ + I++S    +
Sbjct: 346 ---------RYECIVDIVGLEKWLKKIESSQLTAVDTETTSLDAFAAELVGISLSVKPGE 396

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     +I ++    +    ++     +L+ +K + E+   LK+G N+KYD  +  
Sbjct: 397 --------ACYIPVAHRNGEAQLDRDL----VLARMKSWLESATHLKVGQNLKYDSHIFA 444

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            YGI+++G   D +L SYVL+S    H++ S+A++ L       +E+       I  D++
Sbjct: 445 NYGITLKGVVFDTLLESYVLESH-LPHNMDSLAERHLGMKTIRYEEVCGKGVHQIGFDQV 503

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                 ++A E++++ L+L L L P++     LL+VYE+++ P + V+  ME  GI+ID 
Sbjct: 504 DLKIATDYAAEDADITLRLHLELWPQIQESPGLLYVYEKVEMPAMRVLGIMERNGIRIDS 563

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL +   ++ K LL LE  I+ L+G+ FN+ SPKQ+ +ILF +L+ P   KT +G   T
Sbjct: 564 ALLAKQGQQVGKRLLELEGEIHKLAGQPFNIQSPKQIAEILFGQLELPVIKKTPSGAPST 623

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+   IL++R L+K+ STY + LP   + +T RVHT +S A+ +TGR
Sbjct: 624 DEEVLQKL-AEDYPLPARILDYRSLAKLMSTYIEKLPRMADPKTGRVHTNFSQATAVTGR 682

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIP++T+ G++IR AFI     KL+SADYSQIELRI+AHIA+   L   F 
Sbjct: 683 LASSDPNLQNIPVRTEEGRRIREAFIPAEGCKLLSADYSQIELRIMAHIAEDENLLTAFR 742

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D+H+  AAEIFGV ++ VS + RR+AK INF +IYG+S F LA  L I  S A +YI
Sbjct: 743 DGKDVHQATAAEIFGVPLDDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIECSAAQNYI 802

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF R+PG+ +Y+E+T+   R+NGYVET+FGRR+   EI       R   ERAAINAP+
Sbjct: 803 AKYFDRYPGVAQYMERTRLEARENGYVETVFGRRLWSPEIKGSNGPRRQGAERAAINAPM 862

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ + AMI+V    E  +L TKMLLQ+HDELVF+VP +EI      + + M    
Sbjct: 863 QGTAADLIKLAMIAVEDWFEKEQLKTKMLLQVHDELVFDVPLDEIELLQAKLPNLMCHVA 922

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L+VPL V+I + +NW+E +
Sbjct: 923 ----QLKVPLAVSIGIGDNWEEAH 942


>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
 gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
          Length = 911

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/979 (35%), Positives = 537/979 (54%), Gaps = 79/979 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS+++RA+++ P L+    G    AI G  NML  L++    +   SH  V
Sbjct: 6   ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVINMLKSLIR----QYDPSHMVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKANRP +P+ L  Q+  +    +A G P I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +  IA ++   V + + DKD+ QLV+    L +T+ +   D + V++K+G+ P+ ++   
Sbjct: 121 FARIASEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDTISDPDTVVEKFGVGPDLIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD +DNIPG+ G G KTA   LQ+YG+L+ ++ NA  IK  K  E +    +   LS
Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLQKYGSLQGVMDNAGEIKG-KIGEKLANALDHLPLS 239

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            +L  ++ DV +   L+   L++ N   LI+     EF + +  +               
Sbjct: 240 YELATIKCDVEVESDLDTFKLQEPNKDELIALYGECEFRRWLAEL--------------- 284

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                                + +    Q       Q+     +
Sbjct: 285 -------------------------------------LENPSDAQTHLAVPSQETELPKV 307

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+        +++L      +F   T ++D   ++ + ++ S     +     
Sbjct: 308 EEAHYETILTEAQFDTLIEQLNGADLFAFDTETTSLDYMQAQLVGMSFSVKAG-EAAYLP 366

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           V   + D           +    + ++  L     + +  K+G N+KYDK VL   G  +
Sbjct: 367 VAHDYPDAP---------EQLSLEFVMQKLGPILADANKAKVGQNLKYDKSVLANAGYEL 417

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
            G   D ML SYV +S  + HD+ S+A K+L +     ++I    K  +  ++I   +  
Sbjct: 418 NGIKFDTMLESYVFNSVGTRHDMDSLALKYLGHKNISFEDIAGKGKKQLTFNQIELDKAA 477

Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L PK+   EKL  V+E ++ P++ V+S +E TG+ ID  +L   
Sbjct: 478 PYAAEDADITLRLHEVLWPKIEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSSMLGAH 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S  + + L+ LE+  ++++GE FNLSSPKQL  +LF KL+ P   KT  G    TA+++ 
Sbjct: 538 SQRLGERLIELEKEAFEIAGEPFNLSSPKQLQVLLFEKLELPIIKKTPKGAPS-TAEEVL 596

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D P+ K I+E R LSK+KSTY D LP  +N++TQRVHT Y  A T TGRL+S +P
Sbjct: 597 QELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDP 656

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G++IR AFI+    K+++ADYSQIELRI+AH+++   L   F N LD+H
Sbjct: 657 NLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANGLDVH 716

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AAE+FGV+++ V+  MRR AK +NF +IYG+S F LA QL +PR EA  YI +YF R
Sbjct: 717 SATAAEVFGVDLDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFER 776

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPG+ EY+E T+    +NGYVETIFGRR+H  EIN+   + R   ERAAINAP+QG+AAD
Sbjct: 777 FPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAAD 836

Query: 899 ITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I ++AM+SV++ + +    T K+L+Q+HDELVFE+  +     ++ I   M +A     +
Sbjct: 837 IIKKAMLSVNQWVYEQAPNTVKLLMQVHDELVFEIKTDCAEAYTKQICELMSQAA----S 892

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V      NW++ +
Sbjct: 893 LDVPLIVEADEGENWEQAH 911


>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
 gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
          Length = 911

 Score =  954 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/981 (35%), Positives = 530/981 (54%), Gaps = 79/981 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q+   + LVDGSS+++RA++A P L       P  AI G  +M+ KL     ++   S  
Sbjct: 4   QQTPPVVLVDGSSYLFRAYHALPPLMTSKS-HPTGAIKGVISMIRKL----EQDFPGSKM 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD    TFRN++Y DYKA RP +P+ L  Q+  +    +A G+P + + G EADD+I
Sbjct: 59  VVVFDAKGKTFRNDLYEDYKATRPPMPDDLAVQIQPIHDMVRAMGLPLLIVSGVEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  + A  +G  V + + DKD+ QLVS    L +T+ + ++D + V++K+GI P+++V 
Sbjct: 119 GTLAHEATSKGIDVVVSTGDKDMAQLVSDHVTLINTMTDTRMDRDGVVEKFGIGPDQIVD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD +DNIPG+   G KTA   LQ + NL+NI+ ++  +K  K  E + E  ET  
Sbjct: 179 YLALVGDKVDNIPGVNKCGPKTAVKWLQTWDNLDNIIEHSDEVKG-KIGEYLREATETLP 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LSR+L  ++TDV +   LE L L   +  +L+   +  E    I  +             
Sbjct: 238 LSRQLATIKTDVDLEFGLEDLKLRTQDDSQLLELFREYELRSWIAELE------------ 285

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                                   N +   +K     +   S  
Sbjct: 286 ----------------------------------------NGDSADEKSTDNAVDNSSNP 305

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                +YT + +  ++  W+ +L+     +F   T ++    +  + ++ +     +   
Sbjct: 306 ASKEKTYTVVTDQAELDSWIDRLKKAPLFAFDTETTSLRYMDADVVGVSFAIEPG-EAAY 364

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 ++       +D+         +LS LK   E+    K+G N+KYDK VL  +GI
Sbjct: 365 VPFGHDYMGAPEQLDRDT---------VLSQLKPLLEDPKKAKLGQNLKYDKNVLANHGI 415

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQ 537
           ++ G   D ML SYVL+S  S HD+ S+A ++L     T + I       +  ++I   Q
Sbjct: 416 NLNGIAEDTMLESYVLNSVGSRHDMDSLAMQYLGEQTITFESIAGKGAKQLTFNQIELEQ 475

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E++++ L+L   LRP+L     L  VYE++D P++ V+S+ME  G  I    L+
Sbjct: 476 AGPYAAEDADITLRLHQALRPQLEKTGRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLR 535

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + S E+++ +  LE+  ++ +GE FNL SPKQL  I + K+  P   KT  G    TA+ 
Sbjct: 536 KHSQELAERMAELEKEAHEEAGESFNLGSPKQLQAIFYDKMGLPVVKKTPKGAPS-TAEP 594

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + Q    ++ + + ILE R LSK+KSTY D+LP  I+ RT R+HT Y  A T TGRL+S 
Sbjct: 595 VLQELAHEHTLPRLILEHRSLSKLKSTYTDTLPELIHHRTGRIHTSYHQAVTATGRLSSS 654

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI+++ G++IR+AF++P   KL++ADYSQIELRI+AH++    L   FE   D
Sbjct: 655 EPNLQNIPIRSEQGRRIRQAFVAPEGYKLVAADYSQIELRIMAHLSGDKGLLTAFEKGED 714

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+FGV ++ VS   RR AK INF +IYG+S F L+ QL + R +A +YI RYF
Sbjct: 715 IHRATAAEVFGVAVDDVSGDQRRSAKAINFGLIYGMSAFGLSRQLDVGRHQAQEYIDRYF 774

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P + +Y++  +     +GYVET +GRR++  EIN+    ++   ER AINAP+QG+A
Sbjct: 775 ERYPAVLKYMDNIRKQAHDDGYVETFYGRRLYLPEINARNKQMQQAAERTAINAPMQGTA 834

Query: 897 ADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           ADI +RAM+SV   L++ H+   +M+LQ+HDEL+ EV E  + T  + +   M  A    
Sbjct: 835 ADIIKRAMVSVEDWLQEHHQDDARMILQVHDELILEVRESAVDTIREGLEKRMSAAA--- 891

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
            +L VPL V   V NNW E +
Sbjct: 892 -SLDVPLLVEAGVGNNWDEAH 911


>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
          Length = 923

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/983 (35%), Positives = 526/983 (53%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y +YKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYAEYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE +V  
Sbjct: 123 TLAKEAERRGMKVIVSTGDKDLAQLVTGHVTLINTMTNEALDRDGVLAKFGVPPELIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLSQYGTLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLE----HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETACELAPHVESIESSLATDGEGRDALRDIFSTYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E   +       +     S  T+++  +              
Sbjct: 294 ------------------EPAANGGAAAAGAVQDPASGATAELPLDAA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +        W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYDTVQTWAQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFSVEPG-H 375

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     DL     +D         E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 376 AAYVPVAHRGPDLPAQLPRD---------EVLAKLKPWLEDASRKKLGQHLKYDAQVLVN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 HGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LDKASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S+EI+  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 RLSRQSSEIATRLVELEQEAYVLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE    A +M++Q+HDELV EVPE E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGFAARMIMQVHDELVLEVPENELSVVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
 gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
          Length = 924

 Score =  953 bits (2464), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/977 (34%), Positives = 539/977 (55%), Gaps = 61/977 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLSNAQ-GEPTGALFGVVNMLRSTLKER-----PAYVAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y  YKANRP +P+ L  Q+  +    +A GI  + + G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYDQYKANRPPMPDELRSQVEPMCRIVEALGISILRVPGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +   VTI + DKD  QLV P   L +T+   ++D    V++K+G+  ++++ L A
Sbjct: 117 LQGLAQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++  A  +K  K  EN+    E   L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKG-KIGENLRAALERLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV +RTD+ +      L L + + P L        FT+ +  +       A    PV  
Sbjct: 236 ELVTIRTDLALDASPTTLALREQDVPELTELYARYGFTQALKELG------APVPAPVAA 289

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              T   +G A         +++     +L    S                         
Sbjct: 290 SEATPSLRGTAA---GFARGSVEAPAAGTLDPALSA------------------------ 322

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  +++ + +Q WV++L+     SF   TD +DA  ++ + I+++    +      V
Sbjct: 323 PGEYETVLSAEQLQAWVERLQQADLISFDTETDALDAMRARLVGISLAVEPGR-AAYIPV 381

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +                  +++L  L+   ++    K+G + KYD  VL R+G+ ++
Sbjct: 382 GHDYPGAPA---------QLPMQQVLDALRSVLQDPAKKKLGQHGKYDLHVLRRHGVQVQ 432

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D ML S+VL+S  + HD+ S+A ++L Y     +++       IP  ++   +   
Sbjct: 433 GYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQIPFSQVGIDEASR 492

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L   L+P+L+ E  L  VY  ++ P++ V++ +E  G+++D D L++ S
Sbjct: 493 YAAEDADITLRLHHALQPQLLAEPALDSVYRGIEMPLVPVLASIEANGVRVDTDELRRQS 552

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            ++S  +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 553 QDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPS-TNEEALE 611

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K++STY D LP  +N  T RVHT Y  +   TGRL+S +PN
Sbjct: 612 AIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAATGRLSSSDPN 671

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++P   +L++ADYSQIELRI+AH+++   L + FE   D+HR
Sbjct: 672 LQNIPIRTEDGRRIRRAFVAPEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHR 731

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  +E+V+P  RR AK INF ++YG+S F LA  L I R +A DY+  YF R+
Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFSRY 791

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E+ +   R  GYVET+FGRR++ ++I++    +R   ERAAINAP+QG+AADI
Sbjct: 792 PGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAADI 851

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+ V + L D     +M+LQ+HDELVFE     +      +V  M +A      LR
Sbjct: 852 IKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERMSQAA----KLR 907

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V NNW E +
Sbjct: 908 VPLVVDTGVGNNWDEAH 924


>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
 gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
          Length = 906

 Score =  953 bits (2464), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/956 (35%), Positives = 526/956 (55%), Gaps = 67/956 (7%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +P NAI G  NM+  +++    +      AVIFD    TFR+E+Y  YKA+RP +P+ L 
Sbjct: 6   IPTNAIYGVVNMIRSMMRQFASDR----MAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV    
Sbjct: 62  CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            L +T+    +D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G
Sbjct: 122 TLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181

Query: 213 NLENILINASRI------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            LE +  N  +I        K   + + E  + A+LS +L  ++ DV +    + L+ + 
Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQT 241

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +   L+S    L F   +  +                                      
Sbjct: 242 PDRDALMSLYGKLAFKSWLTELLDG----------------------------------- 266

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
             +   +  +QT   +   +        + +     I+   Y  I+N +D Q W++KL+ 
Sbjct: 267 -GTGVVTADEQTKTSSVTVSTAASHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQ 325

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   TD +D   +  + ++ +  +  +     V   ++D      +D        
Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFAVAEG-EAAYLPVAHDYLDAPQQLDRD-------- 376

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
             +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+
Sbjct: 377 -WVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435

Query: 506 ASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P +  
Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQ 495

Query: 563 E-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
           + KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+N Y+L+G+ F
Sbjct: 496 DAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPF 555

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NLSSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+K
Sbjct: 556 NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLK 614

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P 
Sbjct: 615 STYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPH 674

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR A
Sbjct: 675 GWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRA 734

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVET
Sbjct: 735 KAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVET 794

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKM 920
           IFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E       K+
Sbjct: 795 IFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKL 854

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           L+Q+HDELVFEV E  ++     +   ME A      L VPL       +NW + +
Sbjct: 855 LMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWDQAH 906


>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
          Length = 923

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/983 (35%), Positives = 525/983 (53%), Gaps = 76/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RK+  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y +YKA+RP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYAEYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+G+PPE +V  
Sbjct: 123 TLAKEAERRGMKVIVSTGDKDLAQLVTGHVTLINTMTNEALDRDGVLAKFGVPPELIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +YG L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLSQYGTLDGVVEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLE----HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L  +      L        F   +  + +        
Sbjct: 242 ARKLVTVETACELAPHVESIESSLATDGEGRDALRDIFSTYGFKTWLRELDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E   +       +        T+++  +              
Sbjct: 294 ------------------EPAANGGAAAAGAVQDPAGGATAELPLDAA------------ 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +        W+ K+      +F   T ++D   ++ + ++ S      
Sbjct: 324 -------RNYDTVQTWAQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFSVEPG-H 375

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     DL     +D         E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 376 AAYVPVAHRGPDLPAQLPRD---------EVLAKLKPWLEDASRKKLGQHLKYDAQVLVN 426

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D++ 
Sbjct: 427 HGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVP 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D
Sbjct: 486 LDKASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSD 545

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S+EI+  L+ LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 546 RLSRQSSEIATRLVELEQEAYVLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTD 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 606 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  K++SADYSQIELRI+AHI++   L + F +
Sbjct: 665 ASNDPNLQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFAH 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 725 GEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 785 RYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE    A +M++Q+HDELV EVPE E++   + +   M     
Sbjct: 845 GTAADLIKLSMIAVDDWLERGGFAARMIMQVHDELVLEVPENELSVVREKLPEMMCGVA- 903

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   + V  NW+E +
Sbjct: 904 ---KLKVPLVAEVGVGENWEEAH 923


>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
 gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
          Length = 916

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/980 (37%), Positives = 552/980 (56%), Gaps = 74/980 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++N L LVDGSS+++RAF++ P L+    G    AI G  NML  L+    K+   SH  
Sbjct: 5   QDNPLILVDGSSYLFRAFHSPPHLTNSR-GESTGAIYGVVNMLKSLV----KQFDPSHMV 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD    TFRN++Y +YKANRP +P+ L  Q+  +    +A G+P I I+G EADD+I 
Sbjct: 60  VIFDAKGKTFRNDMYAEYKANRPPMPDELRGQIAPLHDIIRAMGLPLISIEGVEADDVIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T+  IA ++   V I + DKD+ QLV+    L +T+ +  +D   V +K+G+PPE ++  
Sbjct: 120 TFARIATEQKRNVLISTGDKDMAQLVNEHVTLINTMTDTVLDPAGVTEKFGVPPELIIDY 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD +DNIPG+ G G KTA   LQ+YG+L  ++ NA+ IK  K  E +        L
Sbjct: 180 LALMGDKVDNIPGVDGCGPKTAVKWLQQYGSLSQVIENAAAIKG-KIGEKLQAAVPHLPL 238

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S +L  ++ DV ++  L+ L ++  N   LI      EF + +  +              
Sbjct: 239 SFELATIKLDVEVSDDLDQLTIQAPNKDELIKLYGHCEFRRWLAELL------------- 285

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                               D      Q  +  +  ++ +SE T   + +E         
Sbjct: 286 --------------------DGAAPAPQPLTQRETNAQTSSELTAPLIDVE--------- 316

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  I+  + + +W+ +L++    +F   T ++D   +  + ++ +    K     
Sbjct: 317 -----YETILTEEQLDKWLAQLQSAPLFAFDTETTSLDYMQADLVGMSFAVEAGK-AAYL 370

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +   ++      S++          + + L     +E   K+G N+KYDK VL R G+ 
Sbjct: 371 PIGHDYLGAPEQLSKEM---------VFAKLGPLLADEQRPKVGQNLKYDKSVLARAGLE 421

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQV 538
           + G   D ML SYVL+S  + HD+ S+A K+L +     +EI    K+ +  ++I   + 
Sbjct: 422 LNGIKFDTMLESYVLNSVGTRHDMDSLALKYLGHKNISFEEIAGKGKNQLTFNQIELDKA 481

Query: 539 QEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++ L+L  +L PKL   EKL  V+E ++ P++ V+S +E TG++ID D+L +
Sbjct: 482 APYAAEDADITLRLHQMLWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAK 541

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S EI K L  LE+  ++L+GE FNLSSPKQL  ILF K + P   KT  G    TA+++
Sbjct: 542 QSFEIGKRLDELEKEAHELAGEAFNLSSPKQLQVILFEKHELPVIKKTPKGAPS-TAEEV 600

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            Q    D P+ K I+E R LSK+KSTY D LP  +N  TQRVHT Y  A T TGRL+S +
Sbjct: 601 LQELAHDYPLPKLIIEHRGLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSSTD 660

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G+KIR+AF++    K+ +ADYSQIELRI+AH+++   L   F   LD+
Sbjct: 661 PNLQNIPIRTEEGRKIRQAFVAAKGYKIAAADYSQIELRIMAHLSQDKGLLNAFAQGLDV 720

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AAE+FGV++ +V+  MRR AK +NF +IYG+S F LA QL +PR EA  YI +YF 
Sbjct: 721 HSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFE 780

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RFPG+ EY+E T+    + GYVET+FGRR++  EIN+   + R   ERAAINAP+QG+AA
Sbjct: 781 RFPGVLEYMESTREKAAELGYVETLFGRRLYLPEINARNGASRKAAERAAINAPMQGTAA 840

Query: 898 DITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI ++AMI+V+  ++     T ++L+Q+HDELVFE+ EE +    Q I   M +A     
Sbjct: 841 DIIKKAMITVNAWVKAQPANTVRLLMQVHDELVFEIKEECVGDYMQHICLLMSQAAA--- 897

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V     +NWQ+ +
Sbjct: 898 -LDVPLIVESDSGDNWQQAH 916


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/986 (35%), Positives = 531/986 (53%), Gaps = 82/986 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K   + LVDGSS++YRAF+A P L+   DG P NA  G  +M+  L+         S  
Sbjct: 5   TKTAPMVLVDGSSYLYRAFHAIPPLTT-SDGQPTNAARGVISMIRSLIGK----YPESPI 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            VIFD    TFR+EIY +YKA RP +P+ L  Q+  +    +A G+P + I+G EADD+I
Sbjct: 60  VVIFDAKGKTFRDEIYSEYKAQRPPMPDDLRLQIEPIHRMIEAMGLPLVIIEGVEADDVI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T      + G  V + + DKD+ QLV+    L +T+ +  +DI  V  K+GIPPE ++ 
Sbjct: 120 GTIAKQVGEAGRDVIVSTGDKDMAQLVTDKVTLVNTMTDTVMDIAGVKDKFGIPPELIID 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILE 235
             AL GD +DNIPG+PG+G KTA  LLQ  G++++I      I        K   + + +
Sbjct: 180 YLALMGDKVDNIPGVPGVGEKTALALLQGIGSIKDIYERLDDIAPLGFRGSKTMSKKMED 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             + A LS  L  ++ DV +   +  L  E  N   L  + + LEF   +  +       
Sbjct: 240 NRDMAELSYTLATIKCDVELPFDMHALKNEPANKEVLREWFQKLEFKTWLRDIDK----- 294

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                            +  ++ +        E TP    +E  
Sbjct: 295 ---------------------------------APMAAGTTVNDSDEGEDTPAVSDIE-- 319

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +++     QW+++L      +F   T +++   ++ + ++++   
Sbjct: 320 ----------VQYETVLDKSQFNQWLEQLNQAELVAFDTETTSLNYMQAELVGVSVAIEA 369

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K      V   + D      +D          +L  LK + E+E   K+G ++KYD  V
Sbjct: 370 GK-AAYIPVAHDYEDAPEQLDRD---------WVLEQLKPWLEDEGKAKVGQHLKYDANV 419

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L+ Y I++RG   D ML SYV +S  + HD+ S++ K+L +     ++I          +
Sbjct: 420 LNNYDITLRGIKFDTMLESYVFNSTGTRHDMDSLSSKFLGHSTVKFEDIAGKGAKQKTFN 479

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q   +A E++++ L+L   + PKL    +L+ V+  ++ P++ V+++ME TG  I
Sbjct: 480 QIDLEQAAFYAAEDADITLRLHQAILPKLEKTPELVSVFSDIELPLVPVLAKMEQTGALI 539

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D L   SAEI+  L  +E   ++ +G++FNLSSPKQL +ILF K   P   KT  GQ 
Sbjct: 540 DPDRLHAQSAEIASRLQEVEIKAHEEAGQEFNLSSPKQLQEILFEKQGLPVIKKTPKGQP 599

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             TA+ + Q    +  + + I+E R L+K+KSTY D LP  I + T R+HT Y  A T T
Sbjct: 600 S-TAEPILQELAENYELPRLIMEHRSLAKLKSTYTDKLPEMI-QHTGRIHTSYHQAVTAT 657

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+++   L   
Sbjct: 658 GRLSSTDPNLQNIPIRTQEGRRIRQAFVAPEGHKLVAADYSQIELRIMAHLSQDKGLLDA 717

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  D+H+  AAE+F V ++ V+ + RR AK INF +IYG+S F LA QL I R EA  
Sbjct: 718 FAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAINFGLIYGMSAFGLAKQLGISRPEAQK 777

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y++RYF R+PG+  Y+E T+   ++ GYVETIFGRR++  EI +  + +R   ER AINA
Sbjct: 778 YVQRYFERYPGVRTYMETTRENAKEKGYVETIFGRRLYLPEIKARNAMMRQAAERTAINA 837

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QGSAADI +RAMI +H  L D  L  KM++Q+HDEL+FEV E+++  A   I+  M+ 
Sbjct: 838 PMQGSAADIIKRAMIKMHNWLADTDLGVKMIMQVHDELIFEVAEKDLEAAQAKIIDIMQN 897

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           +      + VPL V   V +NW E +
Sbjct: 898 ST----EIDVPLLVEAGVGDNWDEAH 919


>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
 gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
          Length = 916

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/981 (35%), Positives = 543/981 (55%), Gaps = 76/981 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDGSS++YRAF+A P +    DG P NA  G  +M+  L+    K    S   +IFD
Sbjct: 1   MVLVDGSSYLYRAFHAIPPMHT-SDGQPTNATRGVISMIRSLI----KTYPDSPMVIIFD 55

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+EIY +YKA+RP +P+ L PQ+  +    +A G+P + + G EADD+I T   
Sbjct: 56  AKGKTFRDEIYSEYKAHRPPMPDDLRPQIEPIHRVVEAMGLPLVIVDGVEADDVIGTIAK 115

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              ++G  V + + DKD+ QLV+    L +T+    +DI+ V  K+GIPPE ++   AL 
Sbjct: 116 QVGEQGREVVVSTGDKDMAQLVTDKVTLVNTMNNTVMDIQGVKDKFGIPPELIIDYLALM 175

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAETA 240
           GD +DNIPG+PG+G KTA  LLQ  G++++I      I        K  ++ + +  E A
Sbjct: 176 GDKVDNIPGVPGVGEKTALALLQGLGSIKDIYTRLDEIADLGFRGSKTMKQKMEDNKEMA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS  L  ++ DV +    + L   + +  +L  +   LEF   ++ +            
Sbjct: 236 ELSYTLATIKCDVELPFEPQELKNGEADKEKLREWFTKLEFKTWLSDLD----------- 284

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                     K     + SD     +SEQ  Q     +    + 
Sbjct: 285 --------------------------KAPSVETASDTVGNASSEQNGQVEIPVKSDLEA- 317

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  +++     +W++K++     +F   T +++   ++ + ++ S    +   
Sbjct: 318 ------NYETVLDKASFNKWLEKIQAAELVAFDTETTSLNYMAAELVGLSFSVEAGE--- 368

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ ++     +   +      +L  LK + E++   K+G ++KYD  VL+ Y 
Sbjct: 369 -----AAYVPVAHDY--EGAPEQLDRDWVLEQLKPWLEDDSKAKVGQHLKYDANVLNNYQ 421

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I++RG   D ML SYV +S  S HD+ ++A K+L +T    ++I          ++I   
Sbjct: 422 ITLRGIAYDTMLESYVYNSVSSRHDMNTLASKFLGHTCVSFEDIAGKGAKQKTFNQIDLE 481

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +A E++++ L+L   + PK+    +L+ +++ ++ P+I V+++ME TG  ID +LL
Sbjct: 482 VAAFYAAEDADITLRLHQAIWPKIETTPELVSIFKDIECPLIPVLAKMEQTGALIDPELL 541

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S+EI+  L  LE   ++ +GE FNLSSPKQL  ILF K   P   KT  GQ   TA+
Sbjct: 542 HAQSSEIAAKLQELEIKAHEEAGESFNLSSPKQLQVILFEKQGLPVIKKTPKGQPS-TAE 600

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            + Q    D  + + I+E R LSK+KSTY D LP  I ++T R+HT Y  A T TGRL+S
Sbjct: 601 PILQELAQDYELPRLIMEHRSLSKLKSTYTDKLPEMI-QKTGRIHTSYHQAITATGRLSS 659

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI++  G++IR+AFI+P   KL++ADYSQ+ELRI+AH+++ + L   F    
Sbjct: 660 TDPNLQNIPIRSAEGRRIRQAFIAPKGYKLVAADYSQVELRIMAHLSQDSGLLDAFTKDA 719

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H+  AAE+F V++++V+ + RR AK INF +IYG+S F LA QL I R EA  YIKRY
Sbjct: 720 DVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAGKYIKRY 779

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ +Y+E T+   ++ GYVETI+GRR++  +I +  + +R   ER AINAP+QGS
Sbjct: 780 FERYPGVQQYMENTREGAKEKGYVETIYGRRLYLPDIKAKNAMMRQAAERTAINAPMQGS 839

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI +H  L+   L  KM++Q+HDEL+FEV E+++  A + IV  M+ +    
Sbjct: 840 AADIIKRAMIKMHDWLQGTDLDVKMIMQVHDELIFEVAEKDLEAAQKKIVDIMQNSS--- 896

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             + VPL V   V +NW E +
Sbjct: 897 -KIDVPLLVEAGVGDNWDEAH 916


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/979 (36%), Positives = 542/979 (55%), Gaps = 79/979 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS+++RA+++ P L+    G    AI G  NML  L++    +   SH  V
Sbjct: 6   ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVINMLKSLIR----QYDPSHMVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRN++Y +YKANRP +P+ L  Q+  +    +A G P I I+G EADD+I T
Sbjct: 61  IFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPIHRIIKAMGFPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +  IA ++   V + + DKD+ QLV+    L +T+ +   D   V++K+G+ PE ++   
Sbjct: 121 FARIASEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD +DNIPG+ G G KTA   L++YG+L+ ++ NAS IK  K  E +    +   LS
Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDNASEIKG-KIGEKLAAALDHLPLS 239

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            +L  ++ DV +   L+   L++ N   LI+     EF + +  +               
Sbjct: 240 YQLATIKCDVEVESDLDTFKLQEPNKDELIALYGECEFRRWLAEL--------------- 284

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           LD        +A+ TE +    +  +Q                                 
Sbjct: 285 LDNPKDTETHLAVPTEANEVPKVAEAQ--------------------------------- 311

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+        +++L      +F   T ++D   ++ + ++ +     +     
Sbjct: 312 ----YETILTESQFDALIEQLNDAELFAFDTETTSLDYMQAQLVGMSFAVKAG-EAAYLP 366

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           V   +             +    + ++  L     +    K+G N+KYDK VL   G  +
Sbjct: 367 VAHDYPGAP---------EQLSLEFVMQKLGPILADAKKAKVGQNLKYDKSVLANAGYQL 417

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
            G   D ML SYVL+S  + HD+ S+A K+L +     ++I    K  +  +++   +  
Sbjct: 418 NGIKFDTMLESYVLNSVGTRHDMDSLALKFLGHKNISFEDIAGKGKKQLTFNQVELDKAG 477

Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L PKL   EKL  V+E ++ P+++V+S +E TG+ ID  +L   
Sbjct: 478 PYAAEDADITLRLHQVLWPKLAADEKLKSVFEDIEMPLVNVISDIERTGVAIDSKMLAAH 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S  + + LL LE+  Y+++GE FNLSSPKQL  +LF KL+ P   KT  G    TA+++ 
Sbjct: 538 SQRLGERLLELEKEAYEIAGEPFNLSSPKQLQVLLFEKLELPIIKKTPKGAPS-TAEEVL 596

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D P+ K I+E R LSK+KSTY D LP  +N++TQRVHT Y  A T TGRL+S +P
Sbjct: 597 QELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDP 656

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G++IR AFI+    K+++ADYSQIELRI+AH+++   L   F N LD+H
Sbjct: 657 NLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANGLDVH 716

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AAE+FGV++E+V+  MRR AK +NF +IYG+S F LA QL +PR EA  YI +YF R
Sbjct: 717 SATAAEVFGVSLEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFER 776

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPG+ EY+E T+    ++GYVETIFGRR++  EI +   + R   ERAAINAP+QG+AAD
Sbjct: 777 FPGVLEYMETTREKAAESGYVETIFGRRLYLPEIKAQNGARRKGAERAAINAPMQGTAAD 836

Query: 899 ITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I ++AM+SVH  + +    T K+L+Q+HDELVFE+  + +   ++ I   M +A      
Sbjct: 837 IIKKAMLSVHSWVYEQAPNTVKLLMQVHDELVFEIKTDCVDAYTKHICELMSQAA----T 892

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V     +NW++ +
Sbjct: 893 LDVPLIVEADEGDNWEQAH 911


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/999 (35%), Positives = 531/999 (53%), Gaps = 76/999 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   R     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNSQ-GEPTGAMFGVLNMLKSLISQVR----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++++  YK++RP +P+ L  Q+  +    ++ GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDKLFEQYKSHRPPMPDDLRRQIQPLHDIIRSLGIPLLSVEGVEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  +G  V I + DKD+ QLV     L +T+    +D + VI+K+GIPPE ++   A
Sbjct: 122 AVQASSQGKKVLISTGDKDMAQLVDENIMLINTMSNTLLDRQGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  +  N  ++        KK  E +L    
Sbjct: 182 LMGDSSDNIPGVAGVGEKTALGLLQGIGSMSEVYANLDKVADLPIRGAKKLGEKLLAAKA 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  E LI+   N   L +     EF + ++ V +  +     
Sbjct: 242 DADLSYVLATIKTDVKLDVIPEKLIIGTPNNDELAAQFGRYEFKRWLSEVLSGNNSMVNP 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E VV                                     +N  Q    +        
Sbjct: 302 PEQVVR------------------------------------VNRYQAAAAVPKTESAVK 325

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   I+   Y  +     +Q W++K++     +    TD++DA  ++ + I+   L+  +
Sbjct: 326 NSVKIDRTLYETVTTPAQLQSWIEKIQQANLIAVDTETDSLDAMTAELVGISFG-LENGE 384

Query: 419 DTSFKVETIFI----------DLSVH------TSQDSTGKNTLTKEILSYLKKFFENEHF 462
                +  +            DL         TS          ++ L+ LK   EN   
Sbjct: 385 ACYIPLAHVHEVAEAEEQAQADLFAEPKATGKTSWHRLPDQLNREDCLARLKPVLENADI 444

Query: 463 LKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518
            KIG N+KYD  +   +GI ++G   D ML SYVL+S    H++  +A+++L +     +
Sbjct: 445 RKIGQNLKYDLTIFANHGIQVQGVAFDTMLESYVLNST-GRHNMDDLAERYLGHQTISFE 503

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMI 577
            +    K+ +  DKI  +Q  E+A E+++V ++L   L  +L     L  +++ ++ P++
Sbjct: 504 TLAGKGKNQLTFDKIPLAQAAEYAAEDADVTMKLHQTLWAELEKTPTLTTLFKDIELPLV 563

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+S++E  G+ ID   L++ S E  + L +LE   ++++GE FNL+SPKQL +ILF KL
Sbjct: 564 SVLSRIERNGVLIDAQALRKQSQEFGERLTALEAKAHEIAGEAFNLASPKQLQEILFNKL 623

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
             P   KT  G   T  + LE++   D+ + K ++E R L+K+KSTY D LP  IN  T 
Sbjct: 624 HLPVLQKTPKGDPSTKEEVLEEL-AFDHELPKLLVEHRGLAKLKSTYTDKLPQMINPHTG 682

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVHT Y  A T TGRL+S +PNLQNIPI+ + G++IR+AF++    ++I+ADYSQIELRI
Sbjct: 683 RVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVARDGYRIIAADYSQIELRI 742

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH++    L   F    DIHR  A+EIFG+ +E VS + RR AK INF +IYG+S F L
Sbjct: 743 MAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQRRSAKAINFGLIYGMSAFGL 802

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           + QL I R EA  Y+  YF R+P +  ++   +   +  G+VET+FGRR++  +I S  +
Sbjct: 803 SRQLAISRMEAKKYMDLYFQRYPNVQTFMHDIQEKAKAQGFVETLFGRRLYLPDIKSGNA 862

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           S R   ER AINAP+QG+AADI +RAMI +   +   +    M++Q+HDELVFEV  E++
Sbjct: 863 SRRKGAERVAINAPMQGTAADIIKRAMIDIDHVIAGDE-DILMIMQVHDELVFEVRSEKV 921

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              S++I   ME A      L VPL V   V  NW E +
Sbjct: 922 EFYSELIKQKMETAA----QLDVPLIVEAGVGANWDEAH 956


>gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1]
 gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1]
          Length = 941

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/982 (39%), Positives = 568/982 (57%), Gaps = 60/982 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  + HL+LVDGS +I+RA++  P L+ +H G+P  A+ GF  MLWKL+    +    +H
Sbjct: 14  MSSK-HLYLVDGSGYIFRAYHRLPPLTNRH-GIPAGAVYGFTTMLWKLINELHQADGPTH 71

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVI D  + TFRNE+Y  YKA+RP  PE L+PQ PL+R A +AF +P IE  G EADDI
Sbjct: 72  LAVILDASSKTFRNEMYDQYKAHRPPPPEDLVPQFPLIRDAVRAFSVPCIEELGLEADDI 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA Y   A  + + VTI+S+DKDLMQL+ P   L DT+   ++  EHV++K+G+ PE + 
Sbjct: 132 IACYAEAALAQDWQVTIVSSDKDLMQLIRPGLDLLDTMNNRRLGREHVLEKFGVEPEALG 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GDS+DN+PG+PGIG KTA+ L+Q++G L+ +L +  +I + K +++++++A+ A
Sbjct: 192 DVLALMGDSVDNVPGVPGIGPKTASQLIQQFGTLDAVLASTDQITKPKLKQSLIDHADNA 251

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           RLSR+LV L+ D P+  PL+ L L+      L +FL+   F  L+ +V            
Sbjct: 252 RLSRELVRLKCDAPLPEPLDGLELKGLPPEPLRAFLEDQGFKSLLAKVQGDGPATLPTGG 311

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P +L +                                    +E+ P  +        +Q
Sbjct: 312 PTMLAL---------------------------------APGAEEKPAPVI-------AQ 331

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P N+  Y  +V+   + +W+      G  +    TD +D   +  + +++ST   K   
Sbjct: 332 VPFNHKDYETVVDEAALDRWIADGFACGRIAVDTETDNVDPVRANLVGVSLSTAPGK--- 388

Query: 421 SFKVETIFIDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                  +I L+         T +       L+ LK   E  H LKIG NIKYD +VL +
Sbjct: 389 -----ACYIPLAHIGDGLLSETPRQIAMDAALAKLKPLLEAAHILKIGQNIKYDMVVLAK 443

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKISD 535
           YG+ +  ++D ML+SY LD+G   H +  +AQ+ L +   E   +  + KS I  DK++ 
Sbjct: 444 YGVDVAPYDDTMLLSYDLDAGLGGHGMDELAQRHLDHGCIEFKTVCGTGKSQISFDKVTL 503

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               E+A E+++V L+LW LL+ +L  E    VYE +D+P++ V++ ME  GI++D++ L
Sbjct: 504 DVATEYAAEDADVTLRLWQLLKGRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREEL 563

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++SAE S     LE  I+  +G  F + SPKQLGDILF K+    G K KTG + T   
Sbjct: 564 ARLSAEFSGEATRLEAAIHAEAGTPFTVGSPKQLGDILFDKMGLKGGRKGKTGVYSTDVT 623

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           +LE++      I + +L+WRQL+K++STY D+L   IN  T RVHT +S+A   TGRL+S
Sbjct: 624 ELERLAGDGVAIARLVLDWRQLTKLRSTYTDALQQQINPATGRVHTCFSMAVAQTGRLSS 683

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI++D G++IR AF++ P K ++SADYSQIELR+ AH+A +  L   F    
Sbjct: 684 TDPNLQNIPIRSDHGRRIRDAFVAEPGKLILSADYSQIELRLAAHMADVPALKDAFARGD 743

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + A E+FG    +V+   R  AKTINFSI+YGIS + LA +L + R EA   I RY
Sbjct: 744 DIHALTAQEVFG----EVNRDTRARAKTINFSILYGISAWGLAGRLEVSREEAQGMIDRY 799

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPGI+ YI  T   VR  GYV T+FGR+ H   I S K   R   ER AINAPIQG+
Sbjct: 800 FSRFPGINHYIAATLGQVRDQGYVSTLFGRKTHLPWIRSAKQGERQSAERQAINAPIQGT 859

Query: 896 AADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +ADI +RAM+ ++ +L    L   KMLLQ+HDELVFE+  E++  AS +I   M  A  P
Sbjct: 860 SADIIKRAMVRMNPALAAAGLGDVKMLLQVHDELVFELAPEQVEPASAVIRAVMAGAAEP 919

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            + L VPL V I    +W   +
Sbjct: 920 IVRLSVPLGVEIGTGPSWGAAH 941


>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
 gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
          Length = 906

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/956 (35%), Positives = 531/956 (55%), Gaps = 67/956 (7%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +P NAI G  NM+  +++    +      AVIFD    TFR+E+Y  YKA+RP +P+ L 
Sbjct: 6   IPTNAIYGVVNMIRSMMRQFASDR----MAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV    
Sbjct: 62  CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            L +T+    +D + VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G
Sbjct: 122 TLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181

Query: 213 NLENILINASRI------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            LE +  N  +I        K   + + E  + A+LS +L  ++ DV +    + L+ + 
Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQT 241

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +   L+S    L F   +  +                           ++      T  
Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------------------LDGGTGVVTAD 274

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           + ++ SS+   T+  ++   P+              I+   Y  I+N +D Q W++KL+ 
Sbjct: 275 EQTKTSSVIVSTTATHAAAIPE---------SPAAHIDRSQYQTILNEQDFQLWLEKLKQ 325

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   TD +D   +  + ++ +  +  +     V   ++D      +D        
Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFAVAEG-EAAYLPVAHDYLDAPQQLERD-------- 376

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
             +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+
Sbjct: 377 -WVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435

Query: 506 ASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P +  
Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQ 495

Query: 563 E-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
           + KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+  Y+L+G+ F
Sbjct: 496 DSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLEQLEQKAYELAGQPF 555

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NLSSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+K
Sbjct: 556 NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLK 614

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P 
Sbjct: 615 STYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPH 674

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR A
Sbjct: 675 GWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRA 734

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVET
Sbjct: 735 KAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVET 794

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKM 920
           IFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E       K+
Sbjct: 795 IFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKL 854

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           L+Q+HDELVFEV E  ++     +   ME A      L VPL       +NW + +
Sbjct: 855 LMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWDQAH 906


>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
 gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
          Length = 928

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/981 (40%), Positives = 570/981 (58%), Gaps = 61/981 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +   H+ L+DGS FI+RAF+  P ++R  DG PVNA+ GF  ML KLL +S  +    H 
Sbjct: 3   EAPRHVTLIDGSGFIFRAFHGLPPMTRA-DGTPVNAVYGFTTMLMKLLADSSSD----HV 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVIFD    TFR+ IYP+YKA+RP  PE L+PQ PLVR AT+AF +PAIE++GFEADD+I
Sbjct: 58  AVIFDSSRKTFRSAIYPEYKAHRPPAPEELVPQFPLVREATRAFDLPAIELEGFEADDLI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           ATY  +A + G  VTI+S+DKDLMQLV P   + D +K   I    V +K+G+ P+K+V 
Sbjct: 118 ATYARLAVEAGARVTIVSSDKDLMQLVGPGVEMIDPMKNRTIGEAEVREKFGVSPDKVVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GDS DN+PG+PGIG KTAA L++EYG+L+ +L  AS IKQ KRRE+++  A+ AR
Sbjct: 178 VQALCGDSSDNVPGVPGIGVKTAAQLIEEYGDLDTLLARASEIKQPKRRESLIANADLAR 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +SR+LV LRTD P+ +PL  L ++     +L +F  A  F  L+ R+       A     
Sbjct: 238 ISRELVRLRTDAPVPVPLSELDVKPPAPEKLAAFCAAQGFRSLMGRLNAKIPTAAPTATR 297

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            VL                                                   +  S  
Sbjct: 298 AVLPTE---------------------------------------------APAEAPSLP 312

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P    +Y  + +   ++ W+      G   F   T  +D   ++ + ++++    +    
Sbjct: 313 PKVETAYELVTDLAALENWIALATGGGLVGFDTETTGLDPLRARLVGVSLAVAPGRACYI 372

Query: 422 FKVETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             +              ST   +     E L+ LK    +   LK+GHNIKYD  V+   
Sbjct: 373 PVLHAPAQAQGDLLGGPSTDAPQIIPAAETLARLKPLLADPSVLKVGHNIKYDMQVMAMQ 432

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           G+++  F+D ML+SY LD     H +  +    L +      E+  S ++ +  D++   
Sbjct: 433 GLAVEPFDDTMLLSYALDGASHGHGLDELCLLHLGHANIPFSEVCGSGRNQVTFDRVPLD 492

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           + +++A E++++ L+L  LL+P+L+ E+++ VYE L++P++ V++ ME  GI++D+  L 
Sbjct: 493 KARDYAAEDADMTLRLHALLKPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDRAQLM 552

Query: 597 QVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            +S +  + L  LE  +  L+ GE FNL SP+QLG +LF  L  P G KTKTGQW T A 
Sbjct: 553 ALSEDFGRRLTELETEVIALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGAD 612

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    + +   +L+WRQLSK+K TY D+L   IN  T RVHT YSLA+T TGRL+S
Sbjct: 613 VLEEL-APLHALPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYSLAATTTGRLSS 671

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G+KIR AF++ P KKL+SADYSQIELR++AH+A+I  L   F +  
Sbjct: 672 SDPNLQNIPIRTEEGRKIRHAFVAEPGKKLVSADYSQIELRLVAHVAEIAGLRDAFAHGA 731

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + A+++FGV ++ + P +RR AK INF IIYGIS F LA QL IP+ EA  YI+ Y
Sbjct: 732 DIHAITASQVFGVPLDGIDPALRRRAKAINFGIIYGISAFGLAAQLGIPQGEAKAYIEAY 791

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+P I  Y+E+TK   R  G+V T+FGR++    I     ++R   ERAAIN PIQG 
Sbjct: 792 FARYPEIRAYMERTKEEARDQGFVTTLFGRKVFTPGIKDKNGAMRAFAERAAINGPIQGG 851

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI +  +L    L+ ++LLQ+HDELV E PE E      ++   ME A    
Sbjct: 852 AADIIKRAMIRLPAALAAAGLSARLLLQVHDELVLEAPEAEADATVAVVKQVMEAAA--- 908

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
            +L VPL V   +++ W   +
Sbjct: 909 -SLSVPLLVEAGIADTWGAAH 928


>gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 928

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/985 (35%), Positives = 528/985 (53%), Gaps = 82/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N   LVDGSS+++RAF+  P L+    G    A+ G  NML  L+    K+   +H AV
Sbjct: 14  NNPFILVDGSSYLFRAFHGMPPLTNSK-GQDTGAVYGVINMLRSLI----KQFNPTHMAV 68

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+EIY +YKANRP +PE L  Q+  +    QA G+P I   G EADD+I T
Sbjct: 69  VFDAKGKTFRDEIYTEYKANRPSMPEELRSQIAPLHKIIQAMGLPIIVESGVEADDVIGT 128

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K G    I + DKD+ QLV+    L +T+  + +D + V++K+GIPPE ++   
Sbjct: 129 LADQASKLGIPTLISTGDKDMAQLVNEHVTLINTMNNQIMDPQGVVEKFGIPPELVIDFL 188

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G K+A  LLQ  G++  I  N  +I        KK  + + EY 
Sbjct: 189 ALKGDKVDNIPGVPGVGDKSAVGLLQGIGSINEIYQNLDKIATLDFRGAKKMADKMREYE 248

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E ARLS  L  ++ DV +      L   + N   L                         
Sbjct: 249 EQARLSYTLATIKLDVEMDCSPTSLSPTEANYSELRDLF--------------------- 287

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                              E E  R     T   S     +    S   P +    +   
Sbjct: 288 ------------------AELEFKRWLKEATDALSGNDQLSQADQSNDEPAQNTDIKA-- 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I+    +  W++KL      +F   T +++   ++ + ++    +  
Sbjct: 328 ---------NYHTILTQDALDDWLKKLHNAALFAFDTETTSLNYMQAELVGMSFCIEEG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     +   + D      +DS         +L+  K   E+++  K+G ++KYDK VL 
Sbjct: 378 EAAYLPLAHDYADAPEQLDRDS---------VLALFKPLLEDKNKAKVGQHLKYDKNVLA 428

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            Y I+++G   D ML SYVLDS  + HD+ S+AQ +L       ++I       +  ++I
Sbjct: 429 NYDINLQGIAYDTMLESYVLDSVATRHDMDSLAQHYLGLSTVHFEDIAGKGAKQLTFNQI 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              Q   +A E++++ L+L   +  KL    +L  V   ++ P+  V+++ME  G+ ID 
Sbjct: 489 PLEQAAHYAAEDADITLRLHNHIWKKLNQSPELASVLSEIEVPLATVLAKMEQFGVLIDS 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L Q S +++  +L LE  ++ L+GE+FNL S KQL +ILF KL  P   KT  G   T
Sbjct: 549 QKLGQQSQDLASRILQLENEVHILAGEEFNLGSTKQLQEILFKKLDLPVLKKTPKGAPST 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L+++     P+ K ++E+R LSK+K+TY D LP  IN+R+ RVHT Y  A T TGR
Sbjct: 609 SEEVLQELALT-YPLPKLLMEFRVLSKLKNTYTDKLPKMINQRSGRVHTSYHQAITATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G+++R+AFI  P  K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 668 LSSTEPNLQNIPIRTEQGRRVRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLLKAFS 727

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAE+F V++E+V+ + RR+AK INF +IYG+S F L+ QL + R +A  Y+
Sbjct: 728 QGKDIHTATAAEVFNVSLEEVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSRQDAQHYM 787

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E  +   ++ GYV T+FGRR++  +IN+     R   ERAAINAP+
Sbjct: 788 DLYFERYPGVLKYMEDARVVAKEKGYVSTVFGRRLYLPDINASNGLRRKGAERAAINAPM 847

Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AM+ V   ++      T+M++Q+HDEL+FE+ E+ + +    IV  MEKA
Sbjct: 848 QGTAADIIKKAMLKVDAWIDTLPNDQTRMIMQVHDELIFEIKEQNVESDKNTIVDLMEKA 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               ++L VPL V   V  NW E +
Sbjct: 908 ----VSLDVPLIVEAGVGENWDEAH 928


>gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/986 (36%), Positives = 549/986 (55%), Gaps = 66/986 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRAF++ P L+    G    A+ G  NML  LL    K+   SH  V
Sbjct: 6   ENPFILVDGSSYLYRAFFSPPHLTNSA-GEATGAVYGVVNMLQSLL----KQFNPSHVVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++Y +YK+NRP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYTEYKSNRPSMPDDLRIQIEPLHAVIKAMGLPILTIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  A  +G    I + DKD+ QLV   T L +T+    +D+E V +K+GIPPE ++   
Sbjct: 121 LSRQASAQGITTLISTGDKDMAQLVDTNTLLINTMTNTVLDVEGVNEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
            L GD +DNIPG+PG+G KTA  +LQ  G++++I +N  ++        K   + + +  
Sbjct: 181 GLMGDKVDNIPGVPGVGEKTALAMLQGLGSMDDIYLNLDKLAALGFRGSKTIAKKMQDNE 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E ARLS +L  ++TDV ++   E    +  +   LI     LEF + ++ +         
Sbjct: 241 EMARLSYQLATIKTDVELSESYEDFKPKAQDTDALIKLFGQLEFRRWLSALLDN------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                              S+++    ++S  T           
Sbjct: 295 ----------------------------------GSMTNHQGAVSSTATSSTSTATANPS 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ- 416
            +   I+   Y  I     + QW+ KLE     SF   T ++D   ++ + ++ +     
Sbjct: 321 ATTSSIDRSGYKTIYTQGQLTQWIAKLEAAELFSFDTETTSLDYMQARIVGLSFAVQSNV 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
             D    +E  ++ L+ H   D+  K       L  L+   E+E + K+G N+KYD+ VL
Sbjct: 381 GSDEQPIIEAAYLPLA-HDYIDAP-KQLDLTTTLEKLRPLLESEKYKKVGQNLKYDRSVL 438

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
             +GI ++G   D ML SYVLDS    HD+ ++A K+L +     +EI    K  +P ++
Sbjct: 439 LNHGIELKGIKFDTMLESYVLDST-GRHDMDTLALKYLGHQCISFEEIAGKGKKQLPFNQ 497

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           IS  +   +A E+++V L+L L L  +L  E KLL V+  ++ P++ V+S +E  G++ID
Sbjct: 498 ISIIEAAPYAAEDADVTLRLHLQLFEQLSAEPKLLSVFNNIELPLLTVLSDIERGGVEID 557

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            DLL + SAEI K LL LE   Y+ +G+ FNLSSPKQL  IL+ +L+ P   KT  G   
Sbjct: 558 SDLLTKQSAEIGKRLLELEALAYEEAGKPFNLSSPKQLQTILYDELELPVLKKTPKGAPS 617

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+++     P+ K I+E R LSK+KSTY D LP  +N++T R+HT Y  A T+TG
Sbjct: 618 TAEEVLQELALT-YPLPKLIIEHRGLSKLKSTYTDKLPKMVNEKTGRLHTSYQQAVTVTG 676

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI++  G++IR+AFI+ P  K+++ADYSQIELRI+AH+++   L   F
Sbjct: 677 RLSSTDPNLQNIPIRSAEGRRIRQAFIAQPGYKIVAADYSQIELRIMAHLSQDKGLLDAF 736

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH+  A+E+F V +++V+ + RR AK INF +IYG+S F LA QL I R EA  Y
Sbjct: 737 STGKDIHKATASEVFSVPLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIGRHEAQLY 796

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           + +YF+R+PG+  Y+E T++   +  YVETI GRR+    I S    ++   ERAAINAP
Sbjct: 797 MDKYFNRYPGVLIYMEDTRSLANEKAYVETILGRRLQLPNIKSRNGMLKKAAERAAINAP 856

Query: 892 IQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI ++AMI +   +      + +ML+Q+HDELVF + EE + + ++ I   M K
Sbjct: 857 MQGTAADIIKKAMIDMADWIAQKSPGSVQMLMQVHDELVFSIKEELVESYTKEIQAIMAK 916

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A     +L VPL  +  V +NW E +
Sbjct: 917 AA----DLDVPLIADAGVGDNWDEAH 938


>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
 gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
          Length = 906

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/956 (35%), Positives = 524/956 (54%), Gaps = 67/956 (7%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +P NAI G  NM+  +++    +      AVIFD    TFR+E+Y  YKA+RP +P+ L 
Sbjct: 6   IPTNAIYGVVNMIRSMMRQFASDR----MAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV    
Sbjct: 62  CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            L +T+    +D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G
Sbjct: 122 TLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181

Query: 213 NLENILINASRI------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            LE +  N  +I        K   + + E  + A+LS +L  ++ DV +    + L+ + 
Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQT 241

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +   L+S    L F   +  +                                      
Sbjct: 242 PDRDALMSLYGKLAFKSWLTELLDG----------------------------------- 266

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
             +   +  +QT   +   +        + +     I+   Y  I+N +D Q W++KL+ 
Sbjct: 267 -GTGVVTADEQTKTSSVTVSTAASHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQ 325

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   TD +D   +  + ++ +  +  +     V   ++D      +D        
Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFAVAEG-EAAYLPVAHDYLDAPQQLDRD-------- 376

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
             +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+
Sbjct: 377 -WVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435

Query: 506 ASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P +  
Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALQEAAQYAAEDADVTLRLHQRIHPLIEQ 495

Query: 563 E-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
           + KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+  Y+L+G+ F
Sbjct: 496 DAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGQPF 555

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NLSSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+K
Sbjct: 556 NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLK 614

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P 
Sbjct: 615 STYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPH 674

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR A
Sbjct: 675 GWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRA 734

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVET
Sbjct: 735 KAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVET 794

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKM 920
           IFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E       K+
Sbjct: 795 IFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKL 854

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           L+Q+HDELVFEV E  ++     +   ME A      L VPL        NW + +
Sbjct: 855 LMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGGNWDQAH 906


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/987 (36%), Positives = 537/987 (54%), Gaps = 80/987 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   L LVDGSSF++RAF+A P L+   DG P  AI G  NML KL    R+E      A
Sbjct: 21  KSKSLILVDGSSFLFRAFHALPPLT-APDGTPTGAIHGVINMLQKL----RREENPDRMA 75

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD P  TFR+E+YP+YKA RP +P+ L  Q+  V    +A G P + + G EADD+I 
Sbjct: 76  VVFDAPGPTFRDELYPEYKAQRPPLPDDLRVQIEPVHELVRALGFPLLCVSGVEADDVIG 135

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + A + G +V + + DKD  QLV+    L +T+    +D   +  K+GI   + +  
Sbjct: 136 TLMHQARQNGESVLVATADKDFAQLVTEGIRLVNTMTNTVLDEAAIEAKYGITAAQFIDY 195

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L GD++DN+PG+PG G KTAA  L E+ +L+N++ +A +IK  K  E++    E   +
Sbjct: 196 LTLVGDTVDNVPGVPGCGPKTAAKWLNEWQSLDNLMAHADQIKG-KVGESLRAAKEFLPI 254

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
            R+LV +RTD  + I L  L +E+ +   + +  +      L                  
Sbjct: 255 GRELVTIRTDCDLPIALADLAVEEPDVDAVRALAEKFGLNTLRR---------------- 298

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                      QFS  S   + +++    Q+             
Sbjct: 299 ---------------------------QFSEASSVPAPVSTPS--QETRRTSSDDGQLPL 329

Query: 363 INNDSYTKIVNTKDIQQWVQKLET--------IGSASFKIITDTMDAFHSKPIAIAISTL 414
            +   Y  I+   D Q+W+++++         +   +F   TD++D F  + + ++ S  
Sbjct: 330 SDPPMYETILTDADWQRWLEQIKNADKKTDKKMDWVAFDTETDSLDLFAGRIVGVSFSIE 389

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           D +          ++ L+ +              +L+ LK + E+    K+  N K+D  
Sbjct: 390 DNR--------AAYVPLAHNYP--GAPAQLDRDTVLADLKPWLEDASRTKVMQNAKFDSH 439

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPI 530
           +L  +GI++RG   D ML SYVLDS  + HD+ S+A K+L     T ++I      ++  
Sbjct: 440 MLANHGITLRGVLFDTMLESYVLDSTATRHDMDSLAAKYLGRSTITFEDIAGKGAKALSF 499

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
            +I   Q   +A E+++V  QL   L PKL VE  L  VYE +++P+I+V+  ME  G++
Sbjct: 500 PEIHLEQAGPYAAEDADVTGQLQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAGVR 559

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D+  L      I + + ++E+  +  +G +FNL S KQL ++LF +LK P G KT  G+
Sbjct: 560 VDRGELAIQGKAIGERIAAVEQAAFKEAGREFNLGSTKQLKELLFDELKLPVGKKTPKGE 619

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L ++  G +P+   IL++R LSK+KSTY D LP  I+  T RVH+ +  A T 
Sbjct: 620 PSTDEEALGEL-VGSHPLPALILDYRGLSKLKSTYIDRLPEDIHTHTGRVHSAFHQAVTA 678

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+++ G++IR+AF++ P  KLISADYSQIELRI+AH+++   L  
Sbjct: 679 TGRLSSSNPNLQNIPIRSEEGRRIRQAFVADPGCKLISADYSQIELRIMAHLSEDERLCA 738

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAE+FGV   +VS   RR AK INF +IYG+S F LA QL +PR EA 
Sbjct: 739 AFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINFGLIYGMSAFGLAKQLDVPRGEAQ 798

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI  YF R+PG+ +Y+E+ +   RQ GYVET+FGRR++  EI+S     R   ER AIN
Sbjct: 799 AYIDLYFARYPGVAKYMERMRQQARQMGYVETVFGRRLYLPEIHSRNGQRRQYAERTAIN 858

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI + AMI++HK L       +M+LQ+HDEL+FEVPE ++     II   M 
Sbjct: 859 APMQGTAADIIKIAMIALHKLLVVPG-RARMILQVHDELIFEVPESDVAEIEPIIRAQMT 917

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      L VPL+V I +  +W E +
Sbjct: 918 GAA----KLNVPLEVGIGIGRSWAEAH 940


>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
 gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
          Length = 906

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/956 (35%), Positives = 525/956 (54%), Gaps = 67/956 (7%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +P NAI G  NM+  +++    +      AVIFD    TFR+E+Y  YKA+RP +P+ L 
Sbjct: 6   IPTNAIYGVVNMIRSMMRQFASDR----MAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV    
Sbjct: 62  CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            L +T+    +D + VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G
Sbjct: 122 TLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181

Query: 213 NLENILINASRI------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            LE +  N  +I        K   + + +  + A+LS +L  ++ DV +    + L+ + 
Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEDNRDNAKLSYQLATIKCDVELEESPQTLLKQT 241

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +   L+S    L F   +  +                                      
Sbjct: 242 PDRDALMSLYGKLAFKSWLTELLDG----------------------------------- 266

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
             +   +  +QT   +   +        + +     I+   Y  I+N +D Q W++KL+ 
Sbjct: 267 -GTGVVTADEQTKTSSVTVSTAASHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQ 325

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   TD +D   +  + ++ +  +  +     V   ++D      +D        
Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFAVAEG-EAAYLPVAHDYLDAPQQLERD-------- 376

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
             +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+
Sbjct: 377 -WVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435

Query: 506 ASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P +  
Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQ 495

Query: 563 E-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
           + KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+  Y+L+G+ F
Sbjct: 496 DSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGKPF 555

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N+SSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+K
Sbjct: 556 NVSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLK 614

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P 
Sbjct: 615 STYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPH 674

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR A
Sbjct: 675 GWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRA 734

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVET
Sbjct: 735 KAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVET 794

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKM 920
           IFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E       K+
Sbjct: 795 IFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKL 854

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           L+Q+HDELVFEV E  ++     +   ME A      L VPL       +NW + +
Sbjct: 855 LMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWDQAH 906


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score =  951 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/945 (47%), Positives = 629/945 (66%), Gaps = 32/945 (3%)

Query: 44  MLWKLLQNSRKESI---ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
           MLWKLL ++R  +I    +H A+IFDY + TFR +IYP YKANR   PE L+PQ  L+R 
Sbjct: 1   MLWKLLCDARNTAIGIVPTHIAIIFDYSSNTFRKQIYPQYKANRTAPPEDLIPQFALIRQ 60

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           AT+AF +P IE +GFEADD+IATY  +A + G   TIIS+DKDLMQLV+    LYD++K+
Sbjct: 61  ATEAFNLPCIEKEGFEADDLIATYAQLATQVGAKTTIISSDKDLMQLVNTHVSLYDSMKD 120

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
           + I I  VI+KWG+ PEKM+  QALTGD  DNIPGIPGIG K AA LL ++G+L+ +L  
Sbjct: 121 KHIGISEVIEKWGVMPEKMIDFQALTGDPTDNIPGIPGIGPKIAAQLLDQFGSLDLLLQR 180

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
            + IKQ KRRENI  Y+E A++SR+LV L+ DVPI   L+H +LE  NGPRLI+FLKA+E
Sbjct: 181 VTEIKQIKRRENIQAYSEQAKISRELVKLKKDVPIDKNLDHFVLEPQNGPRLIAFLKAME 240

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
           FT L  RVA    C+AA I+ + +DI     K I  E ++       T+ F   SD    
Sbjct: 241 FTALTRRVAKETSCNAAVIDALEIDIEW---KKITCEPDLRAKED-DTALFHDFSD---- 292

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
                +PQ L  +R  ++    I   +Y  I++ + +++W+ + +  G  SF   T ++D
Sbjct: 293 ----NSPQNLAQKRKDQVLIQKIVRGAYKTILDEETLKEWLLEAKEQGYFSFDTETTSLD 348

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLK 454
              +K I  +++    K          +I L     +D         +   T++ L+ LK
Sbjct: 349 PMQAKLIGFSLALQPGK--------AAYIPLEHVAGEDDLWGDRRIVQQIETQKALALLK 400

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
              EN+  LKIG NIKYD LV+ +Y I MR F+D ML+SY L++G S+H +  ++++WL 
Sbjct: 401 PILENQAILKIGQNIKYDWLVMKQYNIVMRSFDDTMLLSYALEAGISTHGMDILSERWLG 460

Query: 515 YT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +     K++  + +      +I   Q   +A E++++ L+LW +L+P+L+ +++  +YER
Sbjct: 461 HKSITYKDLTYNGRKVNSFAQIDLKQATLYAAEDADITLRLWQVLKPQLVAQRMTKIYER 520

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           LD+P+I+++++ME  GI +D+ +L ++S E+++  L+LEE IY L GEKFN++SPKQLGD
Sbjct: 521 LDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVGEKFNIASPKQLGD 580

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K+  P G+KTK GQW T+AQ LE++    + + + I+ WRQL+K+KSTY D+LP++
Sbjct: 581 ILFGKIGLPGGSKTKNGQWSTSAQTLEELAAEGHILPRKIVNWRQLTKLKSTYTDALPSY 640

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           I  +T RVHT YSLA+T TGRL+S EPNLQNIP++T  G+KIR AFI+     L+SADYS
Sbjct: 641 ILPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIASKGYLLLSADYS 700

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAH A IT L + F    DIH M AA++FGV +E +S ++RR AK INF IIYG
Sbjct: 701 QIELRVLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINFGIIYG 760

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           ISPF LA QL I R EA+ YI+ YF RFPGI +Y+EKTK F R +GYVETIFGRRIH  E
Sbjct: 761 ISPFGLANQLGISRKEASHYIQLYFERFPGIKDYMEKTKMFARHHGYVETIFGRRIHCPE 820

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           I +    +R  NERAAINAPIQGSAADI RRAMI +  +LE  KL+ KMLLQ+HDEL+FE
Sbjct: 821 IKAVNPQVRAFNERAAINAPIQGSAADIIRRAMIQMENALEKEKLSAKMLLQVHDELIFE 880

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           VP+ E T  + ++   ME A +P ++L VPL+V +  + NW E +
Sbjct: 881 VPKSESTKTAILVRKVMENATMPALSLSVPLEVKVITAQNWDEAH 925


>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
 gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
          Length = 908

 Score =  951 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/985 (35%), Positives = 533/985 (54%), Gaps = 89/985 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L LVDGSS++YRAF+A P L+    G P  AI G  NML +L     K+   S  A
Sbjct: 2   STKPLILVDGSSYLYRAFHALPPLTTSK-GQPTGAIKGVVNMLRRL----EKDYPESPIA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+++Y DYKANRP +P+ L  Q+  +    +A G+P + ++G EADD+I 
Sbjct: 57  VVFDAKGKTFRDDMYKDYKANRPPMPDDLRSQVEPLHELIRAMGLPLLIVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T      ++G  V + + DKD+ QLV+    L +T+ +  +DIE V  K+GIPPE ++  
Sbjct: 117 TLAREGTEKGLPVVVSTGDKDMAQLVNEHITLVNTMTDTVMDIEGVKAKFGIPPELIIDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEY 236
            AL GD +DNIPG+PG+G KTA  LLQ  G L +I      I        K   + + E 
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTALALLQNLGGLNDIYTRLDEIASLSFRGSKSMAKKLEEN 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A LS +L  ++TDVP+ +P+E L     +   L+++ + LEF   I           
Sbjct: 237 RDNAYLSYELATIKTDVPLELPIEELKPAPADKAGLMNWYQELEFKGWI----------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                              + L +  +  +    P+ + LE   
Sbjct: 286 -----------------------------------AELENAPADDDGHAVPEAVALET-- 308

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +++    + W++KL+     +F   T +++   ++ + ++ +    
Sbjct: 309 ----------EYDVVLDESAFEAWLEKLQAAALFAFDTETTSLNYMDAEIVGVSFAVEPG 358

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K          ++ ++         +    + +L+ LK   EN+   K+G N+KYD  VL
Sbjct: 359 K--------AAYVPVAHDYL--GAPEQLSREHVLARLKPLLENDGLKKVGQNLKYDANVL 408

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
             Y I+++G   D ML SYV +S  S HD+ ++A+  L +     ++I       +  ++
Sbjct: 409 ANYDIALKGIAYDTMLESYVHNSTGSRHDMDTLAELHLGHKTIHFEDIAGKGAKQLTFNQ 468

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           I   +   +A E++++ L+L   L PK+   E L  V+  ++ P++ ++S++E  G  +D
Sbjct: 469 IKLEEAGPYAAEDADITLRLHQALWPKVAEAEGLKTVFNDVELPLVSILSRIERNGALLD 528

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LL ++S +   +++ LE+  Y+L+GE+FNL SPKQL  ILF K+  P   KT  G   
Sbjct: 529 TKLLGELSLQHGASIVKLEKEAYELAGEEFNLGSPKQLATILFEKMNLPVVKKTAKGAPS 588

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + ++++   D P+   IL+ R LSK+KSTY D LP  +NK+T RVHT Y  A   TG
Sbjct: 589 TNEEVMQELAL-DYPLPSVILQHRSLSKLKSTYTDKLPTMVNKKTGRVHTSYHQAVAATG 647

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPIKTD G++IR+AFI+P   K+++ADYSQIELRI+AH++    L + F
Sbjct: 648 RLSSSDPNLQNIPIKTDEGRRIRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGLQKAF 707

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              LD+H+  AAE+FG  +E VS + RR AK INF +IYG+S F LA QLRI R++A  Y
Sbjct: 708 AEGLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIYGMSAFGLARQLRIGRNDAQTY 767

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R+PG+ EY+   +    + GYVET+ GRR++  EINS     R   ER AINAP
Sbjct: 768 IDTYFERYPGVAEYMANIRKSAAEKGYVETLLGRRLYLPEINSSNGMRRQAAERVAINAP 827

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI V   L+  ++  ++++Q+HDELV EV   +    S  +   M  A
Sbjct: 828 MQGTAADIIKRAMIDVDAWLQTEQIDARIIMQVHDELVLEVAAADAEAISAKLCDIMSSA 887

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
            +    L VPL V   + +NW + +
Sbjct: 888 VV----LSVPLLVEAGIGDNWDQAH 908


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score =  951 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/979 (36%), Positives = 548/979 (55%), Gaps = 78/979 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  AI GF NML +L    +K+   ++ A IFD
Sbjct: 5   LLLVDGSSYLYRAYHALPDL-RNSAGEPTGAIYGFLNMLRRL----QKDYPTAYRACIFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN++Y +YKANR  +P+ L+ Q   +       G P ++++G EADD+I T   
Sbjct: 60  AKGKTFRNDLYQEYKANRAAMPDDLVEQTGHILELVDMLGWPILQVEGVEADDVIGTLAV 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A ++GF   + + DKD+ QLV     L +T+  E +D E VIKK+G+PPE++V   +L 
Sbjct: 120 KAHEDGFDTIVSTGDKDMSQLVDDKVTLVNTMNNEVLDREGVIKKFGVPPERIVDYLSLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DN+PG+  +G KTA   L +Y  L+ ++ NA  I      EN+ +  +    + +L
Sbjct: 180 GDTSDNVPGVAKVGPKTAVKWLTQYHTLDGVIENAQNI-GGAVGENLRQSLDWLPQAHEL 238

Query: 247 VMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           V +RT+  +          L+ +  N   L    +   F      +              
Sbjct: 239 VRIRTNCELPDKFASIETSLLKKPENTEGLKKAFERFGFKSWAKEL-------------- 284

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
             +    E    A +  +  ++  K S F                               
Sbjct: 285 --NAARQETPKAAGQIALFDESEDKKSGF------------------------------- 311

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +N+  Y  ++  K +++W++K++     +    T ++D  ++K + I++S          
Sbjct: 312 VNDKEYETVLTEKQLEKWLEKIDKADLTAIDTETTSLDVMNAKLVGISLSIEPG------ 365

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                +I L+ H+ + S  +    + +L  LK + EN    K+G N+KYD  VL  YGI 
Sbjct: 366 --HAAYIPLAHHSMEQS--EQLPLQSVLDKLKPWLENPKKHKVGQNLKYDSHVLANYGIR 421

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQV 538
           ++G   D +L SYVL+S R  HD+ S+++++L Y      +I     S I  D+I+    
Sbjct: 422 LQGIVHDTLLESYVLESHR-RHDMDSLSERFLDYKPVSYTDICGKGASQIGFDEIAIDVA 480

Query: 539 QEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL   + P+L   + L  +YE+++ P   V+ +ME  G+ ID D L  
Sbjct: 481 THYAAEDADVTLQLHQSMWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNV 540

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+   + SL+EN Y  +G+ FNL+SPKQLG++LF KLK P   KT +G   T+ + L
Sbjct: 541 QSRELGVKMDSLQENAYVTAGQPFNLNSPKQLGELLFDKLKLPMIKKTPSGAPSTSEEVL 600

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K IL++R +SK+K+TY D LP  +N  T RVHT Y+ A  +TGRLAS +
Sbjct: 601 EKL-AEDFPLPKIILDYRGMSKLKTTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASND 659

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G++IR AFI+ P  K+ISADYSQIELRI+AH++    L + F +  D+
Sbjct: 660 PNLQNIPIRSEEGRRIREAFIASPGNKIISADYSQIELRIMAHLSDDASLLKAFHDGQDV 719

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  A+EIF +   +V+   RR+AK INF +IYG+S F +A+ L I R++A +YI RYF 
Sbjct: 720 HRATASEIFDITPLEVTSDQRRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFE 779

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+  Y+++T+   R+ GYVET+FGRR+   EINSP    R   ERAAINAP+QG+AA
Sbjct: 780 RYPGVARYMDETRQLAREQGYVETVFGRRLWLPEINSPNGPRRQAAERAAINAPMQGTAA 839

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + +MI+V   LE  KL +K+++Q+HDELV +VPE+E+    + +   M +       
Sbjct: 840 DIIKLSMIAVQDWLEKEKLDSKLIMQVHDELVLDVPEKELVLVREKLPELMAQVA----R 895

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L+VPL   + V +NW + +
Sbjct: 896 LKVPLIAEVGVGDNWDQAH 914


>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
 gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
          Length = 913

 Score =  951 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/979 (35%), Positives = 543/979 (55%), Gaps = 79/979 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R  +G P  AI GF NML +L     K+   ++ A IFD
Sbjct: 5   LLLVDGSSYLYRAYHALPDL-RNAEGEPTGAIYGFLNMLHRL----EKDYPTAYVACIFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN++Y +YKANR  +P+ L  Q   +    +  G P + I+G EADD+I T   
Sbjct: 60  AKGKTFRNDLYQEYKANRSAMPDDLARQTGPIHELVKMLGWPILSIEGIEADDVIGTLVS 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           IA+++GF   + + DKD+ QLV     L +T+  E +D E V++K+G+PP+++V   +L 
Sbjct: 120 IAKRKGFDTVVSTGDKDMSQLVRDCVTLVNTMNNEIMDEEGVMRKFGVPPDRIVDYLSLV 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+  +G KTA   L +YG+L+ I+ NA  IK     +N+ E  E    +R+L
Sbjct: 180 GDTSDNIPGVNKVGPKTAVKWLTQYGSLDAIIENAVNIKG-TVGDNLRESLEWLPQARQL 238

Query: 247 VMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           + +RTD  ++       E L+    +   L    +   F   +  +              
Sbjct: 239 ITIRTDCDLSGQFKSIEETLVKNSEDVSGLRKAYERYGFKNWLRELNA------------ 286

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  + K    + ++  +   K  +F                               
Sbjct: 287 -----RHQEKETKGQIDLFGEPGTKPEKF------------------------------- 310

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +    Y  ++  +  ++W+  ++     S    T ++D+  ++ + I++S          
Sbjct: 311 VAKQEYETVLTEEQFEKWLNLIDQAPLTSLDTETTSLDSMTARLVGISLSVKPG------ 364

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                +I L+ H       K      +L  LK + EN    K+G N+KYD  +   Y I 
Sbjct: 365 --FAAYIPLAHH--PIEVAKQLPLDHVLKKLKSWLENPAKKKVGQNLKYDSHIFANYHIH 420

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQV 538
           ++G   D +L SYVL+S R  HD+ S++++ L Y     +EI     S I  D+I     
Sbjct: 421 LQGIAHDTLLESYVLESHR-RHDMDSLSERLLDYKPISYEEICGKGASQIGFDQIELDCA 479

Query: 539 QEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E++++  QL   + P++   E L  +YE+++ P+  V+ +ME  G+ ID DLL  
Sbjct: 480 TRYAAEDADITFQLHENMWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLG 539

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S+E++  +  LE+  Y ++ + FNL+SPKQL +ILF KL  P   KT +G   T+ + L
Sbjct: 540 QSSELALKIDELEKKAYSVAEQSFNLNSPKQLAEILFDKLGLPLVKKTPSGAPSTSEEVL 599

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K IL++R ++K+KSTY D LP  IN  T RVHT Y+ A  +TGRLAS +
Sbjct: 600 EKLAL-DYPLPKIILDFRGMAKLKSTYTDKLPRMINPETGRVHTNYAQAVAVTGRLASND 658

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP+KT+ G++IR AFI+P    ++SADYSQIELRI+AH++    L + F    D+
Sbjct: 659 PNLQNIPVKTEEGRRIREAFIAPAGCYIVSADYSQIELRIMAHLSDDPGLLKAFREGQDV 718

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H+  A+EIF +   +V+P+ RR+AK INF +IYG+S F +A+ L I R++A +YI RYF 
Sbjct: 719 HKATASEIFDIAPLEVTPEQRRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFR 778

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY++  +   R+ GYVET+FGRR+   EINSP    R   ERAAINAP+QG+AA
Sbjct: 779 RYPGVAEYMDAIRQTAREQGYVETVFGRRLWLPEINSPNGPRRQAAERAAINAPMQGTAA 838

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + +MI+V+  +E+ +L +K+++Q+HDELV EVP++E+    + +   M +      +
Sbjct: 839 DIIKLSMIAVNDWIENEQLESKLIMQVHDELVLEVPDKELERVRKRLPELMGQVA----S 894

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L+VPL  ++    NW+E +
Sbjct: 895 LKVPLIADVGFGKNWEEAH 913


>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
 gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
          Length = 906

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/956 (36%), Positives = 533/956 (55%), Gaps = 67/956 (7%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +P NAI G  NM+  +++    +      AVIFD    TFR+E+Y  YKA+RP +P+ L 
Sbjct: 6   IPTNAIYGVVNMIRSMMRQFASDR----MAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV    
Sbjct: 62  CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            L +T+    +D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G
Sbjct: 122 TLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181

Query: 213 NLENILINASRI------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            LE +  N  +I        K   + + E    A+LS +L  ++ DV +    + L+ + 
Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQT 241

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +   L+S    L F   +  +                           ++      T  
Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------------------LDGGTGIVTAD 274

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           + ++ SS++  T+  ++   P+              I+   Y  I+N +D Q W++KL+ 
Sbjct: 275 EQTKTSSVTVSTAATHAAAIPE---------SPAAHIDRSQYQTILNEQDFQLWLEKLKQ 325

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   TD +D   +  + ++ +  +  +     V   ++D      +D        
Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFAVAEG-EAAYLPVAHDYLDAPQQLERD-------- 376

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
             +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+
Sbjct: 377 -WVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435

Query: 506 ASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P +  
Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQ 495

Query: 563 E-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
           + KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+N Y+L+G+ F
Sbjct: 496 DAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPF 555

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NLSSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+K
Sbjct: 556 NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLK 614

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P 
Sbjct: 615 STYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPH 674

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR A
Sbjct: 675 GWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRA 734

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVET
Sbjct: 735 KAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVET 794

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKM 920
           IFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E       K+
Sbjct: 795 IFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKL 854

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           L+Q+HDELVFEV E  ++     +   ME A      L VPL       +NW++ +
Sbjct: 855 LMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQAH 906


>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
 gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
          Length = 929

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/994 (34%), Positives = 523/994 (52%), Gaps = 90/994 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FA
Sbjct: 6   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+++Y +YKANRP +P+ +  Q+  +  +  A G P + ++G EADD+I 
Sbjct: 61  VVFDAKGGTFRDDMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+    +DIE V +K+G+ PE+++  
Sbjct: 121 TLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDIEGVKEKFGVAPEQIIDY 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQE-YGNLENILINASRIK------QKKRRENILE 235
            AL GDS DNIPG+PGIG KTA+ LL    G L+ +      +        K     + E
Sbjct: 181 LALMGDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEE 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + E A LS +L  ++ DVP+ + L+ L L + +  +L+     LEF    + +       
Sbjct: 241 HKEMAFLSYQLATIKIDVPLDVGLDDLHLIEPDREKLLELYTLLEFKSWFDEIQ------ 294

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                    D    E K   +                                       
Sbjct: 295 --------RDAKRVELKAAPV-------------------------------------VE 309

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +YT I++      W++KL      +F   T  +DA  ++ + ++ +   
Sbjct: 310 DVAEVAAPAEATYTTILDQATFDIWLKKLNDAKLFAFDTETTGIDAQQAQLVGVSFAVQP 369

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   +I       +D+         +L  LK   E+   LK+G + K+D  +
Sbjct: 370 H-EAAYIPLTHAYIGAPEQLDRDT---------VLLALKPLLEDPTKLKVGQHAKFDMNI 419

Query: 476 LHR--------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKS 523
           L          +GI++RG   D ML SYVL++  + HD+ S+A+K+L Y     ++I   
Sbjct: 420 LANCAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVAFQDIAGK 479

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQ 582
               +  D+I+  Q   +A E+++V L+L   L  +L  +  L  V   ++ P++ V+++
Sbjct: 480 GAKQLTFDQIALEQAGPYAAEDADVTLRLHQALFAQLSAIPSLASVLTDIEIPLVPVLAR 539

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D+DLL   S E+   ++ LE   ++++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 540 IERQGALVDKDLLGIQSIELGNKMVELERQAFEIAGEEFNLGSPKQLGAILYEKLGLPVL 599

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  GQ  T  + L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT 
Sbjct: 600 KKTGKGQASTAEEVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 659

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A   TGRL+S +PNLQNIP++T  G++IR+AFI+P   K+++ADYSQIELRI+AH++
Sbjct: 660 YHQAVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPKGYKMLAADYSQIELRIMAHLS 719

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   L   F ++LD+H   AAE+F V +  V+   RR AK INF +IYG+   +L   + 
Sbjct: 720 KDEGLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGAQKLGKDIG 779

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +    A  YI  YF R+PG+ EY+E+T+      GYVET FGRR++  +I+S K   R  
Sbjct: 780 VDTKTAKAYIDVYFARYPGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNKPQERAA 839

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI ++AM+ V   L D  L  K++LQ+HDELV EV E+ +   S+
Sbjct: 840 AERTAINAPMQGTAADIIKKAMVLVDNWLTDSGLDAKVILQVHDELVLEVREDLVAEVSE 899

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            I   M  A      L VPL V + V +NW + +
Sbjct: 900 KIREYMSAAA----QLDVPLLVEVGVGDNWDQAH 929


>gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/979 (36%), Positives = 543/979 (55%), Gaps = 79/979 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS+++RA+++ P L+    G    AI G  NML  L+    K+   SH  V
Sbjct: 6   ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVVNMLKSLI----KQYDPSHMVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKANRP +P+ L  Q+  +    +A G P I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPLHSIIKAMGFPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +  IA ++   V + + DKD+ QLV+    L +T+ +   D E V++K+G+ PE ++   
Sbjct: 121 FARIASEQQRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPETVVEKFGVGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD +DNIPG+ G G KTA   LQ+YG+L+ ++ NAS IK  K  E + +  +   LS
Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLQKYGSLQGVIDNASDIKG-KIGEKLAKAIDHLPLS 239

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            +L  ++ DV +   L+   L+  N   LI+     EF + +  +               
Sbjct: 240 YELATIKCDVEVESDLDTFKLQTPNKDELIALYGECEFRRWLAEL--------------- 284

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           LD     +  +A+ T                                     Q+     +
Sbjct: 285 LDNPKDADTHLAVPT-------------------------------------QENELPKV 307

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            +  Y  I+     +  +++L      +F   T +++   ++ + ++ +     +     
Sbjct: 308 EDAHYETILTEAQFETLIEQLNEAELFAFDTETTSLEYMKAQLVGMSFAVKAG-EAAYLP 366

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           +   +             +    + ++  L     +E+  K+G N+KYDK VL   G  +
Sbjct: 367 IAHDYPGAP---------EQLSLEFVMQKLGPILADENKAKVGQNLKYDKSVLANAGYEL 417

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
            G   D ML SYV +S  + HD+ S+A K+L +     ++I    K  +  ++I   +  
Sbjct: 418 NGIKFDTMLESYVFNSVGTRHDMDSLALKYLGHKNISFEDIAGKGKKQLTFNQIELEKAA 477

Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L PKL   EKL  V+E ++ P++ V+S +E TG+ ID ++L   
Sbjct: 478 PYAAEDADITLRLHQVLWPKLEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLATH 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S  + + LL LE+  ++++GE FNLSSPKQL  +LF KL+ P   KT  G    TA+++ 
Sbjct: 538 SQRLGERLLELEKEAFEIAGEPFNLSSPKQLQVLLFEKLELPVIKKTPKGAPS-TAEEVL 596

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D P+ K I+E R LSK+KSTY D LP  +N+RTQRVHT Y  A T TGRL+S +P
Sbjct: 597 QELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDP 656

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G++IR AFI+    K+++ADYSQIELRI+AH+++   L   F N LD+H
Sbjct: 657 NLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANGLDVH 716

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AAE+FGV +E+V+  MRR AK +NF +IYG+S F LA QL +PR EA  YI +YF R
Sbjct: 717 SATAAEVFGVELEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFER 776

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPG+ EY+E T+    +NGYVETIFGRR+H  EIN+   + R   ERAAINAP+QG+AAD
Sbjct: 777 FPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAAD 836

Query: 899 ITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I ++AM+SVH  +      T K+L+Q+HDELVFE+  E     ++ I   M +A      
Sbjct: 837 IIKKAMLSVHAWVNQQAPNTVKLLMQVHDELVFEIKTECTEQYTKQICELMSQAA----Q 892

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V     +NW++ +
Sbjct: 893 LDVPLIVEADEGDNWEQAH 911


>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
 gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
          Length = 937

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/990 (36%), Positives = 536/990 (54%), Gaps = 67/990 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M  +  L LVDGSS++YRAF+A P L R   G P      AI G  NM+  L    R+E 
Sbjct: 1   MTDKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPKSPATGAIRGMINMMTAL----RREV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A + A IFD P  TFR++ YP+YKANR  +P+ L  Q+  +    +  G P + +   E
Sbjct: 56  RADYAACIFDAPGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVLTVPDVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T   IA  +G  V + S DKDL QLV     + DT+  +K D+  V  ++G+PP
Sbjct: 116 ADDVIGTLAKIAAAQGVEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             MV  Q L GDS+DN+PG+  +G KTAA  L EYG+L+ ++  A+ +K     EN+ + 
Sbjct: 176 NLMVDYQTLVGDSVDNVPGVEKVGPKTAAKWLLEYGSLDALVERAAEVKGA-AGENLRKA 234

Query: 237 AETARLSRKLVMLRTDVPITI------PLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            +   LSRKLV +RTD  +         LE L +       L  F +   F  L+  +  
Sbjct: 235 LDKLPLSRKLVTIRTDCDLEGHVTGLPSLEGLPVGAPQTSELKPFYEKFGFKSLVKTL-- 292

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
               +A  + P +++ N  +    A         T +   F   SD ++           
Sbjct: 293 ----EAQEVPPELIEENIKKKAAKA--------NTDQGGLFDEPSDLSA----------- 329

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                   +  P +N  Y  I   +    W+ KLE    A+    T ++D   ++ + ++
Sbjct: 330 ------LDAAAPASNLKYDTITTWEQFDGWLAKLEAAELAAIDTETTSLDEMVAQIVGVS 383

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S    +          +I L+ H   D+        E+L+ LK + EN    K+G +IK
Sbjct: 384 FSVEPGE--------AAYIPLT-HNYPDAPA-QLPIDEVLAKLKPWLENPEKKKLGQHIK 433

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKS 526
           YD+ V   +GI + G+  D ML SYVL+  +  H +AS+A++ L     + +++      
Sbjct: 434 YDRHVFANHGIEVEGYAHDTMLQSYVLEVHK-PHGLASLAERHLGRSGISYEDLCGKGAH 492

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            I   ++  ++  E++ E+S+  L +   L P+L   + L    +L+    + + ++E  
Sbjct: 493 QISFSQVDIAKAAEYSCEDSDQTLDVHRTLWPQLEANEKLRFVYQLEMDSSEALYRVERN 552

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID   L   S E+   +++LE+  Y+++G+ FNL SPKQ+G+I FTKL  P   KT 
Sbjct: 553 GVMIDSATLAAQSHELGTRIMALEQEAYEIAGQPFNLGSPKQIGEIFFTKLGLPVVKKTP 612

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +G   T  + LE++   D P+   ILE R LSK+K TY D L    N RT RVHT Y+ A
Sbjct: 613 SGAPSTDEEVLEKL-AEDYPLPAKILEHRGLSKLKGTYTDKLGQLANPRTGRVHTHYAQA 671

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRL+S +PNLQNIPI+T  G+++R AF++P    + SADYSQIELRI+AHI+    
Sbjct: 672 VAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDES 731

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F   +D+HR  AAE+FG   ++VS + RR+AK INF +IYG+S F LA  L I   
Sbjct: 732 LLRAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETK 791

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            AA YI+RYF R+PG+  Y+++TK   ++ GYVET+FGRR++  EINSP    R   ERA
Sbjct: 792 AAASYIERYFARYPGVKAYMDETKALAKEQGYVETVFGRRLYLPEINSPNGPRRGGAERA 851

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AAD+ + +M+ V   L++ K ATKM++Q+HDELVFEVPE E+      I  
Sbjct: 852 AINAPMQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDELVFEVPEAEVEWVRAEIPR 911

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M         L+VPL   I +  NW + +
Sbjct: 912 LMAGVAA----LKVPLLAEIGIGPNWDKAH 937


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
          Length = 952

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/997 (35%), Positives = 535/997 (53%), Gaps = 74/997 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+         SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAFHAFPPLTN-RLGEPTGAMYGVLNMLKSLISQVN----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L PQ+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K+G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G+LE I  N  +I        K     +    
Sbjct: 181 ALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATLSFRGAKNFAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS  L  ++TDV + +  + L+ +  +   L    +  EF + +N V         
Sbjct: 241 ANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELAQLFEHYEFKRWLNEVNQN------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                          +  +  S +    N + T      E +  
Sbjct: 295 ------------------------------ANPVTQTSAEKVPNNYQVTQAVRNEENVAN 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           + +  I+   Y  +   + +  W++KL      +    TD++DA  +  + I+ + L+  
Sbjct: 325 VVE--IDRSKYETVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFA-LENG 381

Query: 418 DDTSFKVETIFIDLSVHT-------------SQDSTGKNTLTKEILSYLKKFFENEHFLK 464
           +     +                        S +           LS LK    N    K
Sbjct: 382 EACYIPLGHKQKAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKK 441

Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEI 520
           IG NIKYD  +   YGI ++G   D M+ SY  +S    H++  +A ++L +     +E+
Sbjct: 442 IGQNIKYDLTIFANYGIELQGVAFDTMIESYTQNST-GRHNMDDLAARYLGHKTIPFEEL 500

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDV 579
               K+ +  DKI  ++  E+A E+++V ++L  +L  KL  E +L+ +++ ++ P++ V
Sbjct: 501 AGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGV 560

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +S++E  G+ ID   L   SAEI K L  +E  ++  +G+ FNL+S KQL +ILF KL  
Sbjct: 561 LSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGL 620

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  INK+T RV
Sbjct: 621 PVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRV 680

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y+ A T TGRL+S +PNLQNIPI+ + G++IR+AF++    K+++ADYSQIELRI+A
Sbjct: 681 HTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA 740

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    +   F    DIHR  AAEIFGV + +V+ + RR AK INF +IYG+S F L+ 
Sbjct: 741 HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLSN 800

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I R+EA  Y+  YF R+P + +++   +    + GYVET+FGRR++  +I S  + +
Sbjct: 801 QLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAIL 860

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAP+QG+AADI + AMI +  ++ D+    KM++Q+HDELVFEV  ++I  
Sbjct: 861 RKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EIKMIMQVHDELVFEVKADKIDH 919

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            SQ+I   MEKA    I+L+VPL   + V  NW E +
Sbjct: 920 YSQLIKTEMEKA----ISLKVPLIAEVGVGENWDEAH 952


>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
 gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
          Length = 896

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/978 (36%), Positives = 529/978 (54%), Gaps = 88/978 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DGSS+ +RAF+A P L+    G P  AI G  NM+ K++++ + E      AV
Sbjct: 2   KPPLILIDGSSYFFRAFHALPPLTNSK-GQPTGAIYGVANMIKKIIKDYQPEE----IAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E YP+YKA+RP +P+ L  Q   +    QA G+P + I G EADD+I T
Sbjct: 57  VFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV+    L +T+    +DI+ V  K+G+ PE+++   
Sbjct: 117 LAKQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS+DNIPG+   G KTA   L EY  L+N+L +A+ I   K  E +        LS
Sbjct: 177 TLIGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEI-GGKIGEYLRASIPHLPLS 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KLV ++TD+ + + L  L+ +  +  +LI         KL   +               
Sbjct: 236 KKLVTIKTDLDLPLNLNQLMPKPADSEQLI---------KLTREL--------------- 271

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                 E K    E   + +    T +  +                              
Sbjct: 272 ------EFKSWLKELLQEEENQKSTKEMDAG----------------------------- 296

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           NN SY  I   + +  W+ KLE          T  +D   ++ + I+++  +        
Sbjct: 297 NNKSYEIITTHQQLNHWLNKLEQSQQFCIDTETTNLDVMQAELVGISLAVEED------- 349

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I L+            + +E+L+ LK   EN    KIG NIKYD  VL  YGI++
Sbjct: 350 -NASYIPLAHTDGS----TQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYGITL 404

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
           +G   D ML SYVL+SG   HD+ S+A K+L Y     +++       +  D+I   +  
Sbjct: 405 QGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVEKAG 464

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+L   L P L    L +V   ++ P++ V++ ME+ G+ ID  +L++  
Sbjct: 465 IYAAEDADITLRLHHKLYPMLDKP-LRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHG 523

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           + + + + SLE+    L+G+ FNL+SPKQL +ILF + K P  AKT TGQ   TA+ + Q
Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPS-TAESVLQ 582

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D  +   ILE+R LSK+ STY D+LP  IN +T RVHT Y+ A   TGRL+S +PN
Sbjct: 583 ELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPN 642

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  DIH 
Sbjct: 643 LQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIHA 702

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+EIF  N+E VS + RR AK +NF +IYG+S F LA Q+ + R +A  YI  YF R+
Sbjct: 703 ATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYFRRY 762

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+E+T+    Q GYVET+FGRR++  EINS     +   ER AIN P+QG+AADI
Sbjct: 763 PKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTAADI 822

Query: 900 TRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++ M++V       K  + KM++Q+HDELVFEV +E +     II   ME+     + L
Sbjct: 823 IKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECHAIIHKLMEQ----TVKL 878

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V+I   +NW + +
Sbjct: 879 SVPLVVSIGTGSNWDDAH 896


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 952

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/997 (35%), Positives = 535/997 (53%), Gaps = 74/997 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+         SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAFHAFPPLTN-RLGEPTGAMYGVLNMLKSLISQVN----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L PQ+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDTKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K+G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G+LE I  N  +I        K     +    
Sbjct: 181 ALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATLSFRGAKNFAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS  L  ++TDV + +  + L+ +  +   L    +  EF + +N V         
Sbjct: 241 ANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELAQLFEHYEFKRWLNEVNQN------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                          +  +  S +    N + T      E +  
Sbjct: 295 ------------------------------ANPVTQTSAEKVPNNYQVTQAVRNEENVAN 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           + +  I+   Y  +   + +  W++KL      +    TD++DA  +  + I+ + L+  
Sbjct: 325 VVE--IDRSKYETVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFA-LENG 381

Query: 418 DDTSFKVETIFIDLSVHT-------------SQDSTGKNTLTKEILSYLKKFFENEHFLK 464
           +     +                        S +           LS LK    N    K
Sbjct: 382 EACYIPLGHKQKAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKK 441

Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEI 520
           IG NIKYD  +   YGI ++G   D M+ SY  +S    H++  +A ++L +     +E+
Sbjct: 442 IGQNIKYDLTIFANYGIELQGVAFDTMIESYTQNST-GRHNMDDLAARYLGHKTIPFEEL 500

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDV 579
               K+ +  DKI  ++  E+A E+++V ++L  +L  KL  E +L+ +++ ++ P++ V
Sbjct: 501 AGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGV 560

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +S++E  G+ ID   L   SAEI K L  +E  ++  +G+ FNL+S KQL +ILF KL  
Sbjct: 561 LSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGL 620

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  INK+T RV
Sbjct: 621 PVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRV 680

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y+ A T TGRL+S +PNLQNIPI+ + G++IR+AF++    K+++ADYSQIELRI+A
Sbjct: 681 HTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA 740

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    +   F    DIHR  AAEIFGV + +V+ + RR AK INF +IYG+S F L+ 
Sbjct: 741 HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLSN 800

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I R+EA  Y+  YF R+P + +++   +    + GYVET+FGRR++  +I S  + +
Sbjct: 801 QLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAIL 860

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAP+QG+AADI + AMI +  ++ D+    KM++Q+HDELVFEV  ++I  
Sbjct: 861 RKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EIKMIMQVHDELVFEVKADKIDH 919

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            SQ+I   MEKA    I+L+VPL   + V  NW E +
Sbjct: 920 YSQLIKTEMEKA----ISLKVPLIAEVGVGENWDEAH 952


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 952

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/997 (35%), Positives = 534/997 (53%), Gaps = 74/997 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+         SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAFHAFPPLTN-RLGEPTGAMYGVLNMLKSLISQVN----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR E++  YK++RP +P+ L PQ+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDTKGKTFRYELFKQYKSHRPPMPDDLRPQIEPLHRIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A K+G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+ G+G KTA  LLQ  G+LE I  N  +I        K     +    
Sbjct: 181 ALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATLSFRGAKNFAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS  L  ++TDV + +  + L+ +  +   L    +  EF + +N V         
Sbjct: 241 ANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELAQLFEHYEFKRWLNEVNQN------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                          +  +  S +    N + T      E +  
Sbjct: 295 ------------------------------ANPVTQTSAEKVPNNYQVTQAVRNEENVAN 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           + +  I+   Y  +   + +  W++KL      +    TD++DA  +  + I+ + L+  
Sbjct: 325 VVE--IDRSKYETVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFA-LENG 381

Query: 418 DDTSFKVETIFIDLSVHT-------------SQDSTGKNTLTKEILSYLKKFFENEHFLK 464
           +     +                        S +           LS LK    N    K
Sbjct: 382 EACYIPLGHKQKAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKK 441

Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEI 520
           IG NIKYD  +   YGI ++G   D M+ SY  +S    H++  +A ++L +     +E+
Sbjct: 442 IGQNIKYDLTIFANYGIELQGVAFDTMIESYTQNST-GRHNMDDLAARYLGHKTIPFEEL 500

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDV 579
               K+ +  DKI  ++  E+A E+++V ++L  +L  KL  E +L+ +++ ++ P++ V
Sbjct: 501 AGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGV 560

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +S++E  G+ ID   L   SAEI K L  +E  ++  +G+ FNL+S KQL +ILF KL  
Sbjct: 561 LSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGL 620

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  INK+T RV
Sbjct: 621 PVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRV 680

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y+ A T TGRL+S +PNLQNIPI+ + G++IR+AF++    K+++ADYSQIELRI+A
Sbjct: 681 HTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA 740

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    +   F    DIHR  AAEIFGV + +V+ + RR AK INF +IYG+S F L+ 
Sbjct: 741 HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLSN 800

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I R+EA  Y+  YF R+P + +++   +    + GYVET+FGRR++  +I S  + +
Sbjct: 801 QLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAIL 860

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAP+QG+AADI + AMI +  ++ D+    KM++Q+HDELVFEV  ++I  
Sbjct: 861 RKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EIKMIMQVHDELVFEVKADKIDH 919

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            SQ+I   MEKA    I+L+VPL   + V  NW E +
Sbjct: 920 YSQLIKTEMEKA----ISLKVPLIAEVGVGENWDEAH 952


>gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
 gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
          Length = 941

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/978 (38%), Positives = 569/978 (58%), Gaps = 58/978 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + ++        +H A
Sbjct: 18  KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEG-NVGGDVTHVA 76

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRN++Y  YKANR  +PE L PQ+PL R AT+AF I   EI+GFEADDIIA
Sbjct: 77  VIFDKGSHTFRNDMYDQYKANREAMPEDLRPQMPLTRDATKAFNIACEEIEGFEADDIIA 136

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDIEHVIKKWGIPPEKMVC 181
           T    A   G   TIIS+DKD+MQLV     + D +K  + ID+E V +K+G+ P +++ 
Sbjct: 137 TLAVQARDAGGRCTIISSDKDMMQLVGGGVVMMDAMKGNKIIDVEDVEEKFGVGPNRVID 196

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GD+ DN+PG PGIG KTAALL+ EYG+LE +L  A  I Q KRR+ ++++     
Sbjct: 197 VQALAGDTADNVPGAPGIGIKTAALLINEYGDLETLLDRAGEITQPKRRQTLIDHRAQIE 256

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS++LV L   + +   L+ L + D     L+ FL  +EF  +  R++      A  +  
Sbjct: 257 LSKRLVTLDDKMDLPFTLDDLEVRDPEPDVLLEFLSQMEFRTMTKRISDKLGVAAPAVAD 316

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V +  +  E                                                 Q 
Sbjct: 317 VAVAADAPE-------------------------------------------------QP 327

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             + + Y  + +   +Q W+ ++   G  +    T +++   ++ + +++     +    
Sbjct: 328 AFDAEKYEWVKDAAALQVWIDQIYARGYVAVDTETTSLNEMRAELVGVSLCVTAGEACYI 387

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                      +             +E L+ LK   E++  LKIG N+KYD  +  R GI
Sbjct: 388 PLTHKSGAADDLFGDDALAEGQMDFEECLAILKPMLEDDSILKIGQNMKYDAKIFKRVGI 447

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538
            +   +D MLMSY +++G   H +  +++++L +T    K +L + KS+   +++     
Sbjct: 448 DVDPIDDTMLMSYAMNAGLHRHGMDVLSEQYLGHTPIPIKPLLGAGKSAKTFNRVPVEDA 507

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A E++++ L+LW + +P+L  +++  VYE +++P++ V+++ME+ GI++D+D L ++
Sbjct: 508 VRYAAEDADITLRLWEVFKPQLHRKQVTSVYETMERPLVPVLAKMEMHGIKVDRDTLSRM 567

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S   ++ +  LE+ +Y+L+G KFN+ SP Q+G+ILF ++    G K K G++ T A  LE
Sbjct: 568 SNAFAQKMAGLEDELYELAGGKFNVGSPAQVGEILFDQMGLEGGKKGKNGKYATGADVLE 627

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +   ++ +   +L+WRQLSK+KSTY D+L  HIN  T RVHT YS+    TGRL+S +P
Sbjct: 628 DL-ATEHDLPGRVLDWRQLSKLKSTYTDALQTHINAETGRVHTSYSITGANTGRLSSTDP 686

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+TD G+KIR AFI+   K L++ DYSQIELRILAH+A I  L Q F +  DIH
Sbjct: 687 NLQNIPIRTDEGRKIREAFIADEGKVLVALDYSQIELRILAHVANIDALKQAFRDGHDIH 746

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            M A+E+F V +++++P +RR AK INF +IYGIS F LA  LRIPR+EA  +I RYF R
Sbjct: 747 AMTASEMFNVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRYFER 806

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPGI  Y++ T  F +++  VET+FGR+IH  EIN+ K       +RAAINAPIQG+AAD
Sbjct: 807 FPGIRTYMDDTVAFAKEHNRVETLFGRKIHTPEINA-KGPGAGFAKRAAINAPIQGTAAD 865

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + RRAMI +  ++    L  KMLLQ+HDELVFEV ++            ME A  P +  
Sbjct: 866 VIRRAMIRMDDAI--AHLPAKMLLQVHDELVFEVDKDAAEDLIAAARDVMENAANPVVKF 923

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V+  +   W E +
Sbjct: 924 DVPLVVDAGIGATWAEAH 941


>gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/985 (35%), Positives = 524/985 (53%), Gaps = 80/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   NNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +     A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIHALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  + V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L     +        K     I+E A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPENVSDLGFRGAKTMAAKIIENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  RLS +L  ++TDV +      L  +  +   LI     +EF + +  V      D  
Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEV-----LDNK 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               VV D                                              +E  + 
Sbjct: 296 APTTVVADAAK-------------------------------------------VETQES 312

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
               P     Y  I+    + +W+ KL+     +    T ++D   ++ + ++ +    K
Sbjct: 313 SMPNPALETQYDTILTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGMSFAVEAGK 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+         +    +  L  L+   E++   K+G N+KYD  VL 
Sbjct: 373 --------AAYLPLAHDYV--GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLA 422

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I       +  ++I
Sbjct: 423 NAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIGFEDIAGKGAKQLTFNQI 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  V+  ++ P+I V+S +E  G+ ID 
Sbjct: 483 PLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDS 542

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ + +LEE  Y+++GEKFNL SPKQL  + F KL +P   KT  G    
Sbjct: 543 MLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPS- 601

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 602 TAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 662 LSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFA 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI
Sbjct: 722 EGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 782 DTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPM 841

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++  T  Q +   M KA
Sbjct: 842 QGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
            +    L V L     + +NW E +
Sbjct: 902 AI----LDVALLAEAGIGDNWDEAH 922


>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
 gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
          Length = 942

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/983 (35%), Positives = 525/983 (53%), Gaps = 53/983 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L    +  PV AI G  NML +L     K+  A + A +
Sbjct: 2   KTLLLVDGSSYLYRAFHAMPDLRNSAN-EPVGAIQGVLNMLRRL----HKDYPAEYSACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++IYP+YKANR  +P+ L  Q+  +    +A G P I   G EADD+I   
Sbjct: 57  FDAKGKTFRDDIYPEYKANRASMPDDLRSQIEPLFETIRAMGWPLIIEDGVEADDVIGAL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
              AE++G    I + DKD+ QLV+    + +T+++      + +D+  V  K+GIPP  
Sbjct: 117 AKQAEQQGIKTIISTGDKDISQLVNEQITVVNTMRDAFRKTDDVLDVAGVENKFGIPPSL 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++    L GD+ DN+PG+  +G KTA   L+EYG L+NI+ NA  IK     EN+ +   
Sbjct: 177 IIDYLVLIGDTSDNVPGVEKVGPKTAVKWLKEYGTLDNIVANADSIKG-VVGENLRKALP 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               +R+L+ +R DV I    + L+ +  +  +L +     EF      +    D  +  
Sbjct: 236 WLPTARELITIRCDVGIREHFDELVQQAPDKAKLAALFDHFEFRSWKRELDNMPDAVSQP 295

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
              +                            F S +          +  K   +     
Sbjct: 296 SVELA-------------------PAGTSGDLFGSPATAPQTNAGAVSTPKAEPKTTNHH 336

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  I++   +  W+ KL       F   T ++D   ++ + ++ S      
Sbjct: 337 YTPNISRQ-YETILSEAVLDTWLAKLNQAELICFDTETTSLDPLTAQIVGMSFSVAAGTG 395

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   + D                 E+L+  K   EN    K+G N+KYDK VL  
Sbjct: 396 -AYLPLTHDYFDAP---------SQLPLAEVLAKFKPLLENPTIKKVGQNLKYDKHVLAN 445

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI++ G   D +L SYVL+S R  H +  ++ + L       +++       +  ++++
Sbjct: 446 HGIALNGIAHDTLLQSYVLESHRG-HGMDELSARHLGIEPISFEQVAGKGAKQVGFNQVT 504

Query: 535 DSQVQEHAIENSNVILQLWLLLRPK-LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                E+A E++++ LQL   L P+ L  +KL  +Y +++ P ++ +  +E  G+ ID +
Sbjct: 505 IEVAAEYAAEDADITLQLHEALSPQVLQDDKLNFIYSQVEMPSMECLFTIERNGVLIDAN 564

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L + S EI   L+ LE   ++L+G+ FNL SPKQL +ILF KL      KT +G    T
Sbjct: 565 MLNRQSNEIGMKLMELEAKAFELAGQPFNLGSPKQLQEILFGKLGIKPIKKTPSGAPS-T 623

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +D+ Q    D P+ K +LE+R L+K+KSTY D LP  IN  T RVHT Y+ A  +TGRL
Sbjct: 624 DEDVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPKMINAHTGRVHTNYNQAVAITGRL 683

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP   ++SADYSQIELRI+AH++K   + Q F N
Sbjct: 684 ASSDPNLQNIPVRTAEGRRIREAFIAPPGSHIVSADYSQIELRIMAHLSKDAGMLQAFAN 743

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIHR  AAEIFGV    V  + RR+AK INF +IYG+S F LA  L I RS A +YI+
Sbjct: 744 NEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIYGMSAFGLAQNLNIERSAAQNYIE 803

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y++ T+   ++ GYVET FGRR+   EINS     R   ERAAINAP+Q
Sbjct: 804 RYFARYPGVRQYMQDTRELAKEKGYVETYFGRRLWVPEINSANGMRRAGAERAAINAPMQ 863

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + AMI+V K L+D +L TK+++Q+HDELV EV + E+    Q +   M+    
Sbjct: 864 GTAADLIKLAMIAVDKWLKDEQLNTKLIMQVHDELVLEVADSELELVKQKLPELMQSVA- 922

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL   + V +NW+  +
Sbjct: 923 ---KLDVPLLAEVGVGSNWESAH 942


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/979 (39%), Positives = 558/979 (56%), Gaps = 71/979 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           H+FLVDGS FI+RAF+  P +SR  DG PVNA+ GF  ML KLL     ++ A H AVIF
Sbjct: 10  HVFLVDGSGFIFRAFHGLPAMSR-PDGTPVNAVYGFTTMLLKLLS----DTDADHVAVIF 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D   ++FRN+IYP+YKA+RP  PE L+PQ PL+R    AF +P++E++GFEADD+IATY 
Sbjct: 65  DAGRLSFRNDIYPEYKAHRPPAPEDLVPQFPLIRDVVAAFNVPSVEMEGFEADDLIATYA 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G  VTI+S+DKDLMQLV     + DT+K   I    V++K+G+ P+++V +QAL
Sbjct: 125 TQAVARGARVTIVSSDKDLMQLVGERVEMLDTLKNRTIRAPEVLEKFGVAPDRVVDVQAL 184

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD  DN+PG+PGIG KTAA L+ EYG+L+++L  A  IKQ KRRE +L  AE AR+SR+
Sbjct: 185 CGDPTDNVPGVPGIGVKTAAQLIGEYGDLDSLLARAGEIKQPKRRETLLNNAELARISRE 244

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L+ DV                  L SF K     +++                    
Sbjct: 245 LVRLKCDV-------------PVTESLDSFAKRPFDRQVLADFLAAQG------------ 279

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                                    F S+  +    +   T           ++      
Sbjct: 280 -------------------------FKSIVARLGGSSVTPTAAPSVT---APVAVAAPVV 311

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  + + + ++ WV +   IG  +F   T  +D   ++ + ++++T   +      ++
Sbjct: 312 AQYELVTSVEVLEAWVAEATRIGQVAFDTETTGLDPLRAELVGVSLATAPGR-ACYIPIK 370

Query: 426 TIFID----LSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                    L +  S  + G + L +E+ L+ L     +   LKIGHNIKYD  V+ + G
Sbjct: 371 HDAGPAQGSLLLDPSPAAAGPDILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQAG 430

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
           +++  F+D ML+SYVLD     H +  +A+  L +      ++  + K+ I  D++   +
Sbjct: 431 LTVTAFDDTMLLSYVLDGASHGHGMDELAKLHLDHDTIKFADVCGTGKNQITFDRVPLDK 490

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E++++ L+L   L+ +L+ E+++ VYE L++P++ V+  ME  GI++D+  L  
Sbjct: 491 ALAYAAEDADITLRLHGALKARLLAERMVTVYETLERPLVPVIVAMEAAGIKVDRTALMA 550

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +SAE    +  LE  I +L+G +FN+ SP+QLG +LF  +  P G KTKTGQW T A  L
Sbjct: 551 LSAEFGGRMAELEVQIQNLAGREFNVGSPQQLGKVLFENMSLPGGKKTKTGQWGTGADAL 610

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++    + +   +L+WRQLSK+K TY D+L   IN RT RVHT ++LA T TGRL+S +
Sbjct: 611 EELAAQGHDLPARVLDWRQLSKLKGTYTDALVAQINPRTGRVHTSFALALTTTGRLSSSD 670

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G+KIR AFI+ P   L+SADYSQIELR++AH+A I  L Q F +  DI
Sbjct: 671 PNLQNIPIRSEEGRKIRHAFIAEPGHVLLSADYSQIELRLVAHVACIKGLIQAFHDGADI 730

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H + AA++FGV +E + P +RR AK INF IIYGIS F LA QL I   EA  YI  YF 
Sbjct: 731 HAITAAQVFGVPVEGMDPMLRRRAKAINFGIIYGISAFGLAQQLGISNGEAKSYIDAYFG 790

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P I +++E+TK   R NG+V T FGR++    I     ++R   ERAAIN PIQG AA
Sbjct: 791 RYPEIRDFMERTKEEARANGFVLTPFGRKVFTPGIKDKNGAMRAFAERAAINGPIQGGAA 850

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI +  +L    L  ++LLQ+HDELV EVP  E      ++   ME A      
Sbjct: 851 DIIKRAMIRLPAALAAEGLKARLLLQVHDELVLEVPVAEQDATRAVVCRVMESAA----Q 906

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL        +W + +
Sbjct: 907 LDVPLVAEAGFGTSWGDAH 925


>gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 911

 Score =  948 bits (2450), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/979 (35%), Positives = 544/979 (55%), Gaps = 79/979 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS+++RA+++ P L+    G    AI G  NML  L++    +   SH  V
Sbjct: 6   ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVINMLKSLIR----QYDPSHMVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFRN++Y +YKANRP +P+ L  Q+  +    +A G P I I+G EADD+I T
Sbjct: 61  IFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           +  IA ++   V + + DKD+ QLV+    L +T+ +   D   V++K+G+ PE ++   
Sbjct: 121 FARIATEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD +DNIPG+ G G KTA   L++YG+L+ ++ +AS IK  K  E +    +   LS
Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDHASEIKG-KIGEKLAAALDHLPLS 239

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            +L  ++ DV +   L+   L++ N   LI+     EF + +  +               
Sbjct: 240 YELATIKCDVEVESDLDTFKLQEPNKDELIALYGECEFRRWLAEL--------------- 284

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           LD        +A+ TE                                           +
Sbjct: 285 LDNPKDAETHLAVPTEATE-------------------------------------LPKV 307

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            +  Y  I+        +++L +    +F   T ++D   ++ + ++ +    +      
Sbjct: 308 EDAHYETILTQAQFDTLIEQLNSAELFAFDTETTSLDYMKAQLVGMSFAVKAGE------ 361

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              +++ L+         +    + ++  L     +E+  K+G N+KYDK VL   G ++
Sbjct: 362 --AVYLPLAHDYP--GAPEQLSLEFVMQKLGPILADENKAKVGQNLKYDKSVLANAGFAL 417

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
            G   D ML SYV +S  + HD+ S+A K+L +     ++I    K  +  ++I   +  
Sbjct: 418 NGIKFDTMLESYVFNSVGTRHDMDSLALKYLGHKNISFEDIAGKGKKQLTFNQIELEKAA 477

Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L PK+   EKL  V+E ++ P++ V+S +E TG+ ID ++L   
Sbjct: 478 PYAAEDADITLRLHEVLWPKIAADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLAAH 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S  + + L+ LE+  ++++GE FNLSSPKQL  +LF KL  P   KT  G    TA+++ 
Sbjct: 538 SMRLGERLIELEKEAFEIAGEPFNLSSPKQLQVLLFEKLGLPIIKKTPKGAPS-TAEEVL 596

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q    D P+ K I+E R LSK+KSTY D LP  +N++TQRVHT Y  A T TGRL+S +P
Sbjct: 597 QELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAITATGRLSSTDP 656

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+++ G++IR AFI+    K+++ADYSQIELRI+AH+++   L   F N LD+H
Sbjct: 657 NLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANGLDVH 716

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AAE+FGV ++ V+  MRR AK +NF +IYG+S F LA QL +PR EA  YI +YF R
Sbjct: 717 SATAAEVFGVELDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFER 776

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPG+ EY+E T+    +NGYVETIFGRR+H  EIN+   + R   ERAAINAP+QG+AAD
Sbjct: 777 FPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAAD 836

Query: 899 ITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I ++AM+SV++ + +    T K+L+Q+HDELVFE+  +     ++ I   M +A      
Sbjct: 837 IIKKAMLSVNRWVHEQAPNTIKLLMQVHDELVFEIKTDCAPEYTKHICELMSQAAA---- 892

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V     +NW++ +
Sbjct: 893 LDVPLIVEADEGDNWEQAH 911


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score =  948 bits (2450), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/988 (41%), Positives = 581/988 (58%), Gaps = 72/988 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYAT------PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           ++ L+LVDGS++I+RAF+            +K DG P +A+ GFCNMLWKL+ ++   + 
Sbjct: 10  DSRLYLVDGSAYIFRAFHVLDRHAGGSERFQKKDGTPTSAVFGFCNMLWKLVSDAHDAAQ 69

Query: 58  -----ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
                 +HFAV+FD+   +FRN +Y +YKANR   PE L+PQ PLVR AT+AFG+P +E+
Sbjct: 70  EEIGQPTHFAVVFDHSGESFRNALYDEYKANRSAPPEDLVPQFPLVRDATRAFGLPCLEM 129

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
            G+EADDIIAT+  +AE++G    I+S+DKDLMQL++  T ++D +K   ID + VI+K+
Sbjct: 130 AGYEADDIIATHARLAEEKGAETVIVSSDKDLMQLITDRTVMFDPMKNRIIDRQAVIEKF 189

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G  PE+M+ +QAL GDS DN+PG+PGIG KTAA LL++YG+L+ +L  A  IKQKKRRE 
Sbjct: 190 GAGPERMIDMQALMGDSTDNVPGVPGIGPKTAAQLLEDYGSLDALLDRADEIKQKKRREM 249

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++ + E A LSR+LV L   VP+    E L L   +   L+ FL+               
Sbjct: 250 LIAHREDALLSRQLVTLDRHVPVEEAPEDLGLSPFDHAALVRFLE--------------- 294

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                                                +F++L  +  +    + P     
Sbjct: 295 ----------------------------------DEMEFNTLPKRIREAGGLEVP----- 315

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                 +  PI+ + Y  I + K ++  + + E  G  +    TD ++   +    I+ S
Sbjct: 316 TTEASPAAVPIDQNGYEIIFDPKILRALMAEAEEHGIIAIDTETDNLEGMKANLCGISFS 375

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            +  K      V     DLS+   + S  +       L  LK    +   LK+G N+KYD
Sbjct: 376 IVPGK-AYYVPVGHGQTDLSLDDPEHS--QQMSEATALDILKPVLLDPSILKVGQNLKYD 432

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSG-RSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
            L+L    I + G++D ML+SY  D G  S H +  ++++ L +     KEI+ + K   
Sbjct: 433 LLILRERDIDVVGYDDTMLLSYAADCGFASLHGMDELSKRHLGHEPIPYKEIVGTGKKQK 492

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
               +       +A E+++V L+L  +L+ + I  ++  VYE +D+P++ V++ ME  GI
Sbjct: 493 TFGDVPIKDAYIYAAEDADVTLRLHTILKSRAIESQVYTVYETMDRPLVSVITDMERAGI 552

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D+D L  +S E ++ + + E  ++D++GE+FNL+SPKQ+GDILF KL  P G KTKTG
Sbjct: 553 KVDRDRLSALSGEFAQRMAAHEAAVHDIAGERFNLASPKQIGDILFGKLGLPGGKKTKTG 612

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            W T A  LE +      I + IL  R L+K+K TY D+L   I+ +T RVHT +SLAST
Sbjct: 613 AWSTAADTLETLAADGAEIAQEILSHRGLAKLKGTYTDALSESIHPKTGRVHTSFSLAST 672

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T+ G+KIR AFI      LISADYSQIELR+LAHIA+I PL 
Sbjct: 673 TTGRLSSNDPNLQNIPIRTEDGRKIREAFIPEDGNVLISADYSQIELRLLAHIAEIGPLI 732

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F   LDIH M AAE+FGV +E + P +RR AK INF IIYGIS F LA  L I R EA
Sbjct: 733 EAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAINFGIIYGISAFGLARNLGIGRDEA 792

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           + +IKRYF RFPGI  Y+++T    R +GYVET+FGRR H   I + + +IR   ER AI
Sbjct: 793 SLFIKRYFERFPGIKAYMDETIEGARVHGYVETLFGRRSHTPNIKAKQPNIRMGAERQAI 852

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI +RAMI V  +L  H+L+ KMLLQ+HDELV E P ++    + ++   M
Sbjct: 853 NAPIQGSAADIVKRAMIRVPAALAAHRLSAKMLLQVHDELVVECPADQADETAAVLKDVM 912

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A  P ++L VPL V      +W++ +
Sbjct: 913 EGAAGPALSLSVPLVVEAGQGASWEQAH 940


>gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145]
 gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145]
          Length = 924

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/987 (34%), Positives = 545/987 (55%), Gaps = 83/987 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS+++RAF+A P L+    G P  A+ G  NML  LL+  +     SH AV
Sbjct: 7   ENPFILVDGSSYLFRAFHAPPHLTNSA-GEPTGAVYGVVNMLRSLLKRYK----PSHMAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++IY +YKA+RP +P+ L  Q+  +    +A G+P + ++G EADD+I T
Sbjct: 62  VFDAKGKTFRSDIYDEYKAHRPPMPDDLRTQIEPLHAIVKAMGLPLLCVEGVEADDVIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G    I + DKD+ QLV+    L +T+ +  +D   VI+K+G+ P +++   
Sbjct: 122 LAKQAGDKGRFTLISTGDKDMAQLVNDHVMLINTMTDTLLDESGVIEKFGVKPNQIIDYL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+P +G KTA  +LQ   +++ I  + + +        K   + + E+ 
Sbjct: 182 ALMGDSSDNIPGLPKVGEKTAQAMLQGIPSIDKIYEDINAVTELGFRGAKSMPKKLEEFK 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +   +SR+L  ++ DV +    + L +E  +  +L +    +EF + +N +  T      
Sbjct: 242 DQLLMSRELATIKCDVELECAPDALTIEPADTDQLQTLYGKMEFRRWLNELLET------ 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                   T +   E +P +   E    
Sbjct: 296 -------------------------------------GAATDQALGEASPAEEQSE---- 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             Q+ +N D+Y  + N +++  ++++L++    +F   T +++   ++ + ++ S  + +
Sbjct: 315 --QFSVNRDAYKTLFNEEEVSDYIEQLKSAEVIAFDTETTSLNYMEAQLVGVSFSIAEGE 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    ++I ++         K      +L  LK   E+    K+G N+KYD  +L 
Sbjct: 373 --------AVYIPVAHDYV--GVEKQVDRDWLLKVLKPLLEDSSIAKVGQNLKYDAHILR 422

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RYGI +RG + D ML SYV +S  S HD+ +++ ++L++     +EI       +  ++I
Sbjct: 423 RYGIKLRGIKNDTMLASYVFNSVGSRHDMDTLSLQYLNHKPIKFEEIAGKGAKQLTFNQI 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQID 591
             +Q   +A E++++ L+L  +L  K+    E+L  V   ++ P++ +++ ME  G+++D
Sbjct: 483 ELAQAAPYAAEDADITLRLHHILWDKVHQTGEQLASVLTDIEVPLVSILTDMEEYGVKVD 542

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            ++L + S EI+  L  LE+  ++++GE+FNL SPKQL  ILF KL+ P   KT  G   
Sbjct: 543 AEMLGKQSEEIANKLDELEQKAFEIAGEEFNLGSPKQLQQILFEKLELPVIKKTPKGAPS 602

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            TA+++ Q    D P+   IL+ R L+K+KSTY D LP  IN  T RVHT Y  A   TG
Sbjct: 603 -TAEEVLQELAHDYPLPDVILQHRSLAKLKSTYTDKLPRMINPDTGRVHTSYQQAVAATG 661

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIPI+T  G+++R+AF++     +++ DYSQIELRI+AH+++   L + F
Sbjct: 662 RLSSTEPNLQNIPIRTPEGRRVRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDASLLRAF 721

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  A+E+FG ++E+V+ + RR AK +NF +IYG+S F L+ QL IPR EA  Y
Sbjct: 722 AQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNFGLIYGMSAFGLSRQLDIPRHEAQAY 781

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           + +YF RFPG+ EY+E T+   ++ GYV T+FGRR+   EI +   + R   ERAAINAP
Sbjct: 782 MDKYFERFPGVLEYMENTRETAKKQGYVSTLFGRRLPLPEIKASNGARRKAAERAAINAP 841

Query: 892 IQGSAADITRRAMISVHKSLEDHKLAT--KMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +QG+AADI +RAMI V   +++    +  +ML+Q+HDELVFE+  E   + ++ +   M 
Sbjct: 842 MQGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQVHDELVFEIRTEHAESYAKALADVMG 901

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           +A     +L VPL        NW E +
Sbjct: 902 EAA----DLDVPLLAEYGFGANWDEAH 924


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 918

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/989 (35%), Positives = 530/989 (53%), Gaps = 84/989 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N L LVDGSS++YRAF+A+     R   GLP  A+    NM+  L    RK+    
Sbjct: 1   MAPSNPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSL----RKQYPDC 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD    TFR++IYP+YKA R  +P+ L  Q+  +    +A G P + ++G EADD
Sbjct: 57  HVAVVFDAKGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T    A ++   V I + DKD+ QLVS    L DT+K+ K D E VI+K+G+PPE +
Sbjct: 117 VIGTLARQATEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENI 233
           +   AL GD +DNIPG+ G+G KTA  LLQ  G+++ I  N  ++        K   +  
Sbjct: 177 IDYLALMGDKVDNIPGMTGVGEKTALALLQGIGSIDEIAANLDKVAALGFRGSKAFADKF 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E  E  RLS  L  ++TDV +   LE L L   +   L++  +  E   LI  + +  +
Sbjct: 237 REQEEQVRLSYVLATIKTDVELEQSLEELQLGPIDKESLLAVYREYELRNLIKELESGGE 296

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
             A   E                                +  D  + + + +T       
Sbjct: 297 ESAGQEE--------------------------------AGDDSAAPVAAIET------- 317

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  I++  +   W+++L+     +F   T ++D   ++ + ++ + 
Sbjct: 318 -------------DYRCILDEAEFDGWLEQLKVAPLFAFDTETTSLDYMEARIVGVSFAV 364

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              K          ++   V  ++           +L  LK   E+   LK+G N+KYD+
Sbjct: 365 EAGK-AAYVPFGHDYLGAPVQLTEAV---------VLGKLKPLLEDPTRLKVGQNLKYDR 414

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIP 529
            VL  + I ++G   D ML SYVL+S  S HD+ S+A+++L       ++I       + 
Sbjct: 415 NVLLNHDIDLQGIAYDTMLESYVLNSTASRHDMDSLAKRYLGVETTSFEDIAGKGVKQLT 474

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I   Q   +A E++++ L+L   L  +L     L  V+  ++ P++ V+++ME+ G 
Sbjct: 475 FNQIELEQAAPYAAEDADITLRLHQTLWGQLEAVPGLCQVFSEIELPLLPVLARMELLGT 534

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  LL Q S EI   L  LE   ++L+G++FNLSSPKQLG+ILFTKL  P   KT  G
Sbjct: 535 TIDPKLLHQQSQEIELRLAELERQAHELAGQEFNLSSPKQLGEILFTKLGLPIIKKTPKG 594

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++      + + ++E R L+K+KSTY D LP  I  +T RVHT Y  A  
Sbjct: 595 APSTAEEVLAELAET-YELPRLLMEHRTLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVA 653

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI     KL++ADYSQIELRI+AH++    L 
Sbjct: 654 ATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLL 713

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH+  AAE+FGV ++ V+  MRR AK INF +IYG+S F LA QL I R+EA
Sbjct: 714 TAFAEGKDIHKATAAEVFGVALDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEA 773

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+      GYVET+FGRR++  +I S  + +R   ERAAI
Sbjct: 774 QKYMDLYFERYPGVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNAGLRKGAERAAI 833

Query: 889 NAPIQGSAADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   +      + +ML+Q+HDELVFE+ EE++   + II   
Sbjct: 834 NAPMQGTAADIIKRAMINVDGWIRGIEDESIRMLMQVHDELVFEIREEKLEEYTAIIKEK 893

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M  A      L VPL V     +NW + +
Sbjct: 894 MSAAA----ELHVPLLVEAGTGDNWDQAH 918


>gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
 gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
          Length = 928

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/982 (35%), Positives = 521/982 (53%), Gaps = 65/982 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DGSS++YRAF+A P L R  DG PV A+ G  NML +L     KE    + A +
Sbjct: 2   KTLLLIDGSSYLYRAFHAMPDL-RSPDGRPVGAVYGMVNMLRRL----EKEVEFDYSACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+++YP+YKANRP +PE L  Q+  V    QA G P + + G EADD+I T 
Sbjct: 57  FDAKGKTFRDDLYPEYKANRPSMPEELASQITAVHDVVQASGWPMLVVPGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             +    G  V + + DKD+ QLV+P   L +T+  E +D   V +K+G+PP  ++    
Sbjct: 117 ARLGAAAGMKVIVSTGDKDMAQLVTPDVTLVNTMTNELLDEAGVKEKFGVPPSLIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD +DN+PG+   G KTA   L+EYG+L+ I+  A  +   K  EN+    +   + R
Sbjct: 177 LIGDKVDNVPGVDKCGPKTAVKWLEEYGSLDAIIAQAGSV-GGKVGENLRAALDWLPMGR 235

Query: 245 KLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +L+ +  DV +   L H    L     + PRL    + L F      V    +       
Sbjct: 236 RLITIDCDVDLEADLPHGLPGLQHGQKDKPRLAELFQDLGFRTFYREVTEGAEM------ 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P V        +G   + ++                            +           
Sbjct: 290 PAVAQRGEDAPRGGEAQGDMFA--------------------------EPAAPAAPPALS 323

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I+    +  W+ +L      SF   T ++D   ++ + ++ S        
Sbjct: 324 AGALERHYETILTEAQLDAWLARLMAAKVVSFDTETTSLDPMQARIVGVSFSVEAG---- 379

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L  H +     +    +  L+ LK + E+    K G N+KYD  VL  +G
Sbjct: 380 ----HAAYLPLEHHYA--GAPQQLPLEAALAKLKPWLEDASKKKCGQNLKYDCHVLANHG 433

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I++ G  +D ML SYVL+S +  H++  +A++ L       +EI       I   ++   
Sbjct: 434 IALAGIADDSMLASYVLESHQ-RHNMDDLARRHLGENTVSYEEICGKGAKQIGFSEVDVD 492

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +A E++++ L+L      +L  + L  VY  ++ P+ +V+ +ME  G+ ID+D L 
Sbjct: 493 IAANYAAEDADITLRLNQFFAGQLFGD-LEKVYRDIELPVAEVLFKMERHGVLIDRDKLA 551

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTTA 654
             S ++   +L LE+  Y+L+G+ FNL+SPKQL +ILF KL  P+    KT +G + T  
Sbjct: 552 AQSHQLGSQMLELEQRAYELAGQPFNLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTDE 611

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LEQ+   D+P+ K ILE+R L+K+KSTY D LP  I  +T RVHT Y+ A  +TGRLA
Sbjct: 612 SVLEQLAL-DHPLPKCILEYRGLAKLKSTYTDKLPTLIYPQTGRVHTTYAQAVAITGRLA 670

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+++R AFI+P   +++SADYSQIELRI+AH++    + + F + 
Sbjct: 671 SNDPNLQNIPVRTAEGRRVREAFIAPAGWQIVSADYSQIELRIMAHLSDDEGMLKAFASG 730

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AAE+FGV +  V+   RR AK INF +IYG+S F LA QL I RS A  YI R
Sbjct: 731 EDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLIYGMSAFGLAAQLDIERSAAQQYIDR 790

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+ EY++ T+   R+ GYVET+FGRR++  +I       R   ERAAINAP+QG
Sbjct: 791 YFMRYPGVAEYMQATREKAREQGYVETVFGRRLYLPDIKLSNPGRRAGAERAAINAPMQG 850

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + AMI+V   LE   L +K+++Q+HDELV EVP+ E+    + +   M  A   
Sbjct: 851 TAADLIKLAMIAVQDWLERDGLQSKLIMQVHDELVLEVPQAELEQVKRRLPEIMAGAA-- 908

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L+VPL   +   ++W+  +
Sbjct: 909 --ELKVPLLAEVGAGDSWEAAH 928


>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
 gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
          Length = 957

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/988 (35%), Positives = 536/988 (54%), Gaps = 53/988 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            K   L LVDGSS++YRAF+A P L          P  AI G  NML  L    RKE  A
Sbjct: 10  AKPKTLLLVDGSSYLYRAFHAMPDLRAVPGDPSSAPTGAIRGMINMLQSL----RKEVPA 65

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            + A IFD    TFR+ +YP+YKA+R  +P+ L  Q+  +    +  G   + + G EAD
Sbjct: 66  DYAACIFDDKGPTFRDALYPEYKAHRSPMPDDLRSQIEPIHEVVRLMGWKVLAVPGVEAD 125

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A ++G  V + S DKDL QLV+    + DT+   + D+  V  ++G+PP+ 
Sbjct: 126 DVIGTLAVTAARQGIEVIVSSGDKDLAQLVNSHITIIDTMNGRRRDVAGVEAEFGVPPQL 185

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           MV  Q L GD IDN+PG+P +G KTAA  LQEYG+L+ ++ NA +IK     EN+ +  +
Sbjct: 186 MVDFQTLVGDVIDNVPGVPKVGPKTAAKWLQEYGSLDAVVANADQIKG-VVGENLKKSLD 244

Query: 239 TARLSRKLVMLRTDVPITI------PLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
              L R+L+ ++TD  +         L+ +     +   L  F +   F  L   +    
Sbjct: 245 WLPLGRQLLTIKTDCDLDGWMPDLPALDSIATGTMDTGALAIFYEKYGFKGLARTLGGGA 304

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              A+        +   E      +    R  T +   F      +  I S  T      
Sbjct: 305 ASVASKAS-SGFGVGPKERSDAGSDPNSVRQLTREPGLFDEPEAASDPIPSSVT------ 357

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                       N  Y  I+  +   +W+ K++     +    T ++D   ++ + I+ S
Sbjct: 358 ------------NLHYDTILTWEAFDRWLAKVQAADLVALDTETTSLDEMRAQIVGISFS 405

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               +          +I L+ H   D+  +  L  ++L+ LK + ++    K+G ++KYD
Sbjct: 406 VTPGE--------AAYIPLA-HAYPDAPAQLPLA-DVLAKLKPWLQDASHKKLGQHVKYD 455

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSI 528
           + V   +GI ++G+  D ML SYVL+  +  H +AS+A++ L     + +++     + I
Sbjct: 456 RHVFANHGIEVQGYAHDTMLQSYVLEVTK-PHGLASLAERHLGRSGISFEDLCGKGANQI 514

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D++  +Q  +++ E+S++ L +   L P L     L     L+    + + ++E  G+
Sbjct: 515 CFDQVDIAQAAQYSCEDSDMTLDVHRALWPLLQANDKLRFIYELEIASSEALYRIERNGV 574

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID   L   S E+ + +L LE+  ++L+G+ FNLSSPKQ+ +I FTKL  P   KT TG
Sbjct: 575 LIDGPTLAVQSHELGQRILQLEKEAHELAGQPFNLSSPKQIAEIFFTKLGLPVVKKTPTG 634

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L+++   D P+   ILE R L+K+K TY D L    + RT RVHT Y+ A  
Sbjct: 635 SPSTDDEVLQKL-AEDYPLPAKILEHRGLAKLKGTYTDKLAQLAHPRTGRVHTHYAQAIA 693

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRL+SLEPNLQNIP++T  G+++R AF++PP   + SADYSQIELRI+AHI+    L 
Sbjct: 694 VTGRLSSLEPNLQNIPVRTPEGRRVREAFVAPPGSVIASADYSQIELRIMAHISGDAALL 753

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + +D+HR  A+EIFGV+  +V+ + RR+AK INF +IYG+S + LA  L I  + A
Sbjct: 754 LAFHDGIDVHRATASEIFGVDRAQVTSEQRRYAKVINFGLIYGMSAYGLAKALSIDNTAA 813

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +YI+RYF R+PG+  Y+E T+   ++ GYVET+FGRR++  EINSP    R+  ERAAI
Sbjct: 814 KNYIERYFDRYPGVKNYMEHTRALAKRQGYVETVFGRRLYLPEINSPNGPRRSGAERAAI 873

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AAD+ + +M+ V + +++ K ATKM++Q+HDELVFEVPE EI      +   M
Sbjct: 874 NAPMQGTAADLIKLSMVKVQQVIDEEKRATKMIMQVHDELVFEVPESEIDWVRHEVPRLM 933

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
                   +L+VPL   + V  NW + +
Sbjct: 934 AGVA----HLKVPLLAEVGVGANWDKAH 957


>gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
 gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
          Length = 917

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/988 (35%), Positives = 538/988 (54%), Gaps = 90/988 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FA
Sbjct: 6   SQAPLVLVDGSSYLYRAFHALPPLTT-STGKPTGAVKGVLNMLLSL----RKQYPDSPFA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 61  VVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++  
Sbjct: 121 TLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDF 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G   E +  +  ++ +      K     + E
Sbjct: 181 LALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEE 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + L+ L   +     LI+  + LEF   ++ +       
Sbjct: 241 NREQAFLSYQLATIKTDVELDVQLDQLYPGEPQREALIALYRELEFKNWLDDLLRE---- 296

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                                  + +  +    +TP +  ++  
Sbjct: 297 ---------------------------------------AKEAGESGEAETPIQAEVD-- 315

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +++      W++KLE     +F   T ++DA  ++ + ++ +  +
Sbjct: 316 ------------YDVVLDQAGFDAWLKKLEQAELIAFDTETTSIDAQQAQVVGVSFAVKE 363

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 364 G-EAAYVPLAHSYMGVPDQLERDA---------VLRALKPLLEDPQKLKVGQHAKYDINV 413

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           L      I+M+G   D ML SYVLDS  + HD+ S+A K+L +     ++I       + 
Sbjct: 414 LANASTPIAMQGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 473

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL     L  V   ++ P++ V++++E  G 
Sbjct: 474 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 533

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 534 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 593

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 594 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 653

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AFI+P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 654 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPQGYKLLAADYSQIELRIMAHLAKDEGLL 713

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 714 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 773

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 774 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 833

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L +  L  +++LQ+HDELV EV E+ +    + I   M
Sbjct: 834 NAPMQGTAADIMKRAMVAVDNWLRESGLDARVILQVHDELVLEVREDLVEQVREGIRPLM 893

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A     +L VPL V   + +NW E +
Sbjct: 894 SGAA----SLDVPLVVEAGIGSNWDEAH 917


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/985 (35%), Positives = 524/985 (53%), Gaps = 80/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   NNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +     A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIHALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  + V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++        K     I E A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPEKVSDLGFRGAKTMAAKITENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  RLS +L  ++TDV +      L  +  +   LI     +EF + +  V      D  
Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEV-----LDNK 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               VV D                                              +E  + 
Sbjct: 296 APTTVVADAAK-------------------------------------------VETQES 312

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
               P     Y  I+    + +W+ KL+     +    T ++D   ++ + ++ +    K
Sbjct: 313 SMPNPALETQYDTILTETQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGMSFAVEAGK 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+         +    +  L  L+   E++   K+G N+KYD  VL 
Sbjct: 373 --------AAYLPLAHDYV--GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLA 422

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I       +  ++I
Sbjct: 423 NAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIGFEDIAGKGAKQLTFNQI 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  V+  ++ P+I V+S +E  G+ ID 
Sbjct: 483 PLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDS 542

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ + +LEE  Y+++GEKFNL SPKQL  + F KL +P   KT  G    
Sbjct: 543 MLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPS- 601

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 602 TAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 662 LSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFA 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI
Sbjct: 722 EGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 782 DTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPM 841

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++  T  Q +   M KA
Sbjct: 842 QGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
            +    L V L     + +NW E +
Sbjct: 902 AI----LDVALLAEAGIGDNWDEAH 922


>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
 gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
          Length = 915

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/983 (36%), Positives = 530/983 (53%), Gaps = 84/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A
Sbjct: 8   DGKTLLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGIINMLRRM----RKEVTAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ YP YKANRP +P+ L  Q+  + +A ++ G P + I G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDWYPQYKANRPSMPDDLARQIEPIHVAVRSLGWPLLMIDGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE  G  V + + DKDL QLV+    L +T+  EK+D E V+ K+G+PPE++V  
Sbjct: 123 TLAKRAEARGMNVIVSTGDKDLAQLVTDHVTLINTMTNEKLDREGVVAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L ++G L+ I+ +A  IK     +N+        +
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAIKWLTQFGTLDGIVAHADEIKGA-VGDNLRRALHFLPM 241

Query: 243 SRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + TD  +T  +    + L     +   L        F   +  V      +   
Sbjct: 242 ARKLVTVETDCDLTEHVTSFADTLPTRPESREELRDVFTRHGFKTWLREVEVADAVEGP- 300

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             ET++    T++                               
Sbjct: 301 ------------------ETDVPPAPTVEGDGA--------------------------- 315

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +   +    W++K++     SF   T ++D   ++ + I+I+    K 
Sbjct: 316 -------REYDTVQTWEQFDAWLEKIDHAEITSFDTETTSLDPMVAQIVGISIAVEAGK- 367

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I ++ H             E+L+ LK + E+    K+G ++KYD+ VL  
Sbjct: 368 -------AAYIPVAHHGPD--APVQLPRDEVLAKLKPWLESRDKKKVGQHLKYDEQVLAN 418

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI+M G   D +L SYVL+S R  HD+ ++A + L       +++     S I  D+++
Sbjct: 419 YGITMDGIEHDTLLQSYVLESHR-PHDMDNLALRHLGLKTIKYEDVAGKGASQIGFDEVA 477

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L P++  E  L HVY  ++ P   V+ +ME  G+ ID +
Sbjct: 478 LDKASEYAAEDADITLRLHQTLYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVE 537

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+  S EI+  L+ LE   YDL+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 538 KLRVQSNEIATRLVELERQAYDLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTD 597

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K ILE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 598 EEVLQKL-AEDYPLPKTILEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAVTGRL 656

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F+ 
Sbjct: 657 ASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDEALLRAFKQ 716

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  A+E+F V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 717 GEDIHRATASEVFSVTPLEVSNDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 776

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 777 RYFARYPGVAAYMENTRTSAKMKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 836

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V K +E+  + T+M++Q+HDELV EVP++E++   + +   M     
Sbjct: 837 GTAADLIKLSMIAVQKWIEESGIRTRMIMQVHDELVLEVPDDELSDVRKRLPELMCGVA- 895

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 896 ---QLKVPLVAEVGAGANWEEAH 915


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/989 (36%), Positives = 532/989 (53%), Gaps = 85/989 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N L LVDGSS++YRAF+A+     R   GLP  A+    NM+  L    RK+    
Sbjct: 1   MAPSNPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSL----RKQYPDC 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD    TFR++IYP+YKANR  +P+ L  Q+  +    +A G P + ++G EADD
Sbjct: 57  HVAVVFDAKGKTFRDDIYPEYKANRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T    A ++   V I + DKD+ QLVS    L DT+K+ K D E VI+K+G+PPE +
Sbjct: 117 VIGTLARQATEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENI 233
           +   AL GD +DNIPG+ G+G KTA  LLQ  G+++ I  N  ++        K   +  
Sbjct: 177 IDYLALMGDKVDNIPGMTGVGEKTALALLQGIGSIDEIAANLDKVAALGFRGSKAFADKF 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E  E  RLS  L  ++TDV +   LE L L   +   L++  +  E   LI        
Sbjct: 237 REQEEQVRLSYVLATIKTDVALEQSLEELQLGPIDKEALLAVYREYELRNLI-------- 288

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                                            K  +     +  ++ + E       +E
Sbjct: 289 ---------------------------------KELESGGAEESGAEGDDEGAAPVAAIE 315

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  I++  +  +W+ +L+     +F   T ++D   ++ + ++ + 
Sbjct: 316 T------------DYRCILDEAEFDEWLARLQAAPLFAFDTETTSLDYMEARVVGVSFAI 363

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              K          ++   V  ++           +L  LK   E+   LK+G N+KYD+
Sbjct: 364 EPGK-AAYVPFGHDYLGAPVQLTEAV---------VLGKLKPLLEDPARLKVGQNLKYDR 413

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIP 529
            VL  +GI ++G   D ML SYVL+S  S HD+ S+A+++L+    + +EI       + 
Sbjct: 414 NVLLNHGIELQGIAYDTMLESYVLNSTASRHDMDSLARRYLNAETISFEEIAGKGVKQLT 473

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588
            ++I   Q   +A E++++ L+L   L  KL  E  L  V+  ++ P++ V+++ME  G 
Sbjct: 474 FNQIELEQAAPYAAEDADITLRLHQALWGKLSAEPGLAKVFSEIELPLLPVLARMERLGT 533

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            I+  LL Q S EI   L  LE+  ++L+G++FNLSSPKQLG+ILFTKL  P   KT  G
Sbjct: 534 TIEPKLLHQQSQEIEVRLAELEKQAHELAGQEFNLSSPKQLGEILFTKLGLPIIKKTPKG 593

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++      + + ++E R L+K+KSTY D LP  I  +T RVHT Y  A  
Sbjct: 594 APSTAEEVLAELAET-YELPQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVA 652

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI     KL++ADYSQIELRI+AH++    L 
Sbjct: 653 ATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHLSGDKGLL 712

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH+  AAE+FGV +E V+  MRR AK INF +IYG+S F LA QL I R+EA
Sbjct: 713 TAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEA 772

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+      GYVET+FGRR++  +I S  + +R   ERAAI
Sbjct: 773 QKYMDLYFERYPGVLEYMERTRQQADAQGYVETLFGRRLYLPDIKSRNAGLRKAAERAAI 832

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   +   +  + +ML+Q+HDELVFE+ EE++     II   
Sbjct: 833 NAPMQGTAADIIKRAMINVDGWIRGIEDQSIRMLMQVHDELVFEIREEKLEEYIAIIKEK 892

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M  A      L VPL V     +NW + +
Sbjct: 893 MSAAA----ELDVPLVVEAGTGDNWDQAH 917


>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
 gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
          Length = 905

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/977 (35%), Positives = 530/977 (54%), Gaps = 78/977 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P   R  +  P  A+ G  NML +L     K+  A + A +
Sbjct: 2   KTLLLVDGSSYLYRAFHALPDF-RNRNNEPTGAVYGVLNMLRRL----HKDYQADYSACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y +YKANRP +P+ L  Q+  +     A G P + ++G EADD+I T 
Sbjct: 57  FDAKGKTFRDELYAEYKANRPPMPDELAAQIAPLLECINAMGWPMLSVEGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AE E     I + DKD+ QLV+P   L +T+  E +D   V+ ++G+PPE+M+   A
Sbjct: 117 VKQAEGENMRCIISTGDKDIAQLVNPQVTLVNTMTNEMLDEAGVLGRFGVPPERMLDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DNIPG+  +G KTA   L +YG L+N+L++A  I      EN+         SR
Sbjct: 177 LVGDAVDNIPGVAKVGPKTAVKWLNQYGTLDNLLVHAGEI-GGVVGENLRNALGWLSRSR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L+ ++ DV + + L  L  +  +  +L    + L+F   +  +                
Sbjct: 236 QLLSIKCDVSLPVSLHDLGPQPPDMVKLAELYERLDFKSWLRELQQ-------------- 281

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                                 S+       L R    +   + 
Sbjct: 282 -------------------------------------ESQAEGAADALSRGFAPAGSNLV 304

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I+  + + +W+ ++     AS    T  +D   ++ + I+ S            
Sbjct: 305 QADYQTILTPEQLDEWMMRIAAAPLASLDTETTGLDPMRAELVGISFSVEPHHGA----- 359

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L    +     +      +L  LK +  +    K+G N+K+D+ V   +GI ++
Sbjct: 360 ---YIPLGHRYT--GVPRQLPLDFVLEKLKPWLTDPSAPKLGQNLKFDRHVFANHGIGLK 414

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G   D +L SYV +S R  HD+ ++A + L        E+     + I  +++   +  +
Sbjct: 415 GIVHDTLLQSYVFESHR-PHDMDNLALRHLGIKTITYDEVTGKGAARIGFEQVDIERAAQ 473

Query: 541 HAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V LQL   L  ++    KL H+Y  L+ P++DV+ +ME  G+ +D  LL+  S
Sbjct: 474 YAAEDADVTLQLHQHLYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQS 533

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + +L+LEE    ++G  FNL+SPKQ+ +ILF +LK P   KT +G    T +D+ Q
Sbjct: 534 RELGEKMLALEERACTIAGLPFNLNSPKQIQEILFDRLKLPVMKKTPSGVPS-TDEDVLQ 592

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D P+ + +L++R L+K+KSTY D LP  ++  T RVHT Y+ A  +TGRLAS EPN
Sbjct: 593 KLALDYPLARALLDYRGLAKLKSTYTDKLPRMVHPVTGRVHTNYAQAVAVTGRLASNEPN 652

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T  G++IR AFI+P   ++ISADYSQIELRI+AHI++   L + F    DIHR
Sbjct: 653 LQNIPIRTAEGRRIREAFIAPSGYRIISADYSQIELRIMAHISQDAGLLKAFAQGEDIHR 712

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
              +EIFGV +E V+ + RR+AK INF +IYG+S F LATQL I R+ A  Y+ RYF R+
Sbjct: 713 ATGSEIFGVPLETVNSEQRRYAKIINFGLIYGMSEFGLATQLGIERAAARTYMDRYFSRY 772

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +Y+++T+   R+N YVET+FGRR+   EINS     R   ERAAINAP+QG+AADI
Sbjct: 773 PGVADYMQRTRKTARENRYVETVFGRRLWLSEINSSNGMRRQAAERAAINAPMQGTAADI 832

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI VH  L  H+L +K+++Q+HDELV EVPE EI T  + +   M         L+
Sbjct: 833 IKLAMIEVHDWLRRHELRSKLVMQVHDELVLEVPENEIETIKRELPLLMGNVA----QLQ 888

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V + V  NW++ +
Sbjct: 889 VPLLVEVGVGPNWEQAH 905


>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
 gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
          Length = 896

 Score =  947 bits (2447), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/978 (35%), Positives = 532/978 (54%), Gaps = 88/978 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DGSS+ +RAF+A P L+    GLP  AI G  NM+ K++++ + E      AV
Sbjct: 2   KPPLILIDGSSYFFRAFHALPPLTNSK-GLPTGAIYGVANMIKKIIKDYQPEE----IAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E YP+YKA+RP +P+ L  Q   +    QA G+P + I G EADD+I T
Sbjct: 57  VFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQLLQAMGLPLLIIDGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV+    L +T+    +DI+ V  K+G+ PE+++   
Sbjct: 117 LAKQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS+DNIPG+   G KTA   L EY  L+N+L +A+ I   K  E +        LS
Sbjct: 177 TLIGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLDHANEI-GGKIGEYLRASIPHLPLS 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KLV ++TD+ + + L  L+ +  +           +  KL   +               
Sbjct: 236 KKLVTIKTDLDLPLNLNQLMPKPADRE---------QLIKLTRELEFK------------ 274

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                       S L +   +  ++++P+++             
Sbjct: 275 ----------------------------SWLKELLQEEENQKSPKEMGAS---------- 296

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           NN SY  I   + +  W+  LE          T  +D   ++ + I+++  ++       
Sbjct: 297 NNKSYEIITTHQQLNHWLNMLEQSQQFCIDTETTNLDVMQAELVGISLAVEEE------- 349

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I L+            + +E+L+ LK   EN    KIG NIKYD  VL  YGI++
Sbjct: 350 -NASYIPLAHTDGS----TQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYGITL 404

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
           +G   D ML SYVL+SG   HD+ S+A K+L Y     +++       +  D+I   +  
Sbjct: 405 KGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVEKAG 464

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++ L+L   L P L    L +V   ++ P++ V++ ME+ G+ ID  +L++  
Sbjct: 465 IYAAEDADITLRLHHKLYPMLDKP-LRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHG 523

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           + + + + SLE+    L+G+ FNL+SPKQL +ILF + K P  AKT TGQ   TA+ + Q
Sbjct: 524 SRLKEQMKSLEQEAIQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPS-TAESVLQ 582

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D  +   ILE+R LSK+ STY D+LP  IN +T RVHT Y+ A   TGRL+S +PN
Sbjct: 583 ELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPN 642

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  DIH 
Sbjct: 643 LQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIHA 702

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+EIF  N++ VS + RR AK +NF +IYG+S F LA Q+ + R +A  YI  YF R+
Sbjct: 703 ATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYFRRY 762

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+E+T+    Q GYVET+FGRR++  EINS     +   ER AIN P+QG+AADI
Sbjct: 763 PKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTAADI 822

Query: 900 TRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++ M++V       K  + KM++Q+HDELVFEV +E +     II   ME+     + L
Sbjct: 823 IKKTMLAVSNWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECRAIIHKLMEQ----TVKL 878

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V+I   +NW + +
Sbjct: 879 SVPLVVSIGTGSNWDDAH 896


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score =  947 bits (2447), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/985 (35%), Positives = 525/985 (53%), Gaps = 80/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   NNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +     A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIHALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  + V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++        K     I+E A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPEKVSDLGFRGAKTMAAKIIENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  RLS +L  ++TDV +      L  +  +   LI     +EF + +  V         
Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEVLDNKAPTTV 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +   +    +     A+ET+                                      
Sbjct: 301 VADAAKVKTQESSMPNPALETQ-------------------------------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+    + +W+ KL+     +    T ++D   ++ + ++ +    K
Sbjct: 323 ----------YDTILTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGMSFAVEAGK 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+         +    +  L  L+   E++   K+G N+KYD  VL 
Sbjct: 373 --------AAYLPLAHDYV--GAPQQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLA 422

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I       +  ++I
Sbjct: 423 NAGIKLQGVVFDTMLESYVFNSVASRHDMDGLAIKYLGHKNIGFEDIAGKGAKQLTFNQI 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  V+  ++ P+I V+S +E  G+ ID 
Sbjct: 483 PLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDS 542

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ + +LEE  Y+++GEKFNL SPKQL  + F KL +P   KT  G    
Sbjct: 543 MLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPS- 601

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 602 TAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 662 LSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFA 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI
Sbjct: 722 EGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 782 DTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPM 841

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++  T  Q +   M KA
Sbjct: 842 QGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
            +    L V L     + +NW E +
Sbjct: 902 AI----LDVALLAEAGIGDNWDEAH 922


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/994 (39%), Positives = 584/994 (58%), Gaps = 52/994 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++  L L+DGS +I+RAF+A P+++R  DG PVNA+ GF +ML KL+ +   +    H A
Sbjct: 15  QKARLLLIDGSGYIFRAFHALPMMTRA-DGTPVNAVYGFTSMLMKLVDDMMPD----HVA 69

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR++IYPDYKANR   PE L+PQ  LVR AT A  +P +E  GFEADD+IA
Sbjct: 70  VVFDTSRQTFRSDIYPDYKANRLAPPEDLIPQFALVREATTALSLPMMEASGFEADDLIA 129

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           TY  +AE       I+S+DKDLMQLV     + D +K+ +I    V +K+G+ P+K+V +
Sbjct: 130 TYAALAETANMETIIVSSDKDLMQLVRGNVTMLDPMKQRRIGAAEVEEKFGVTPDKVVDV 189

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS DN+PG+PGIG KTAA L+  YG+LE++L  A  IKQ KRREN++ +AE AR+
Sbjct: 190 QALAGDSSDNVPGVPGIGVKTAAELINIYGDLESLLACADEIKQPKRRENLIAFAEQARI 249

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV+LR D P  + +  +     N   L +FL   +F +L+ R+  + D       P 
Sbjct: 250 SRQLVLLREDAPTPLEMGAMKTPPRNMDVLKAFLVEQDFKRLLVRIGASADAADKVSNPA 309

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           V  +      G  + T  ++D T K S  +++ D  S  N E                  
Sbjct: 310 VRSM------GGTLSTNANQDQTAKDSAMATIHDAQSLRNIEA----------------- 346

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                YT I + + +  ++ K    G  +    T  ++A     + I+++    +     
Sbjct: 347 ----DYTLITDREALVSFLGKARKQGFLAVDTETTGLNASAVDLVGISMAIAPGQACYIP 402

Query: 423 KVETIFIDLSVHTSQDSTG-------------KNTLTKEILSYLKKFFENEHFLKIGHNI 469
                  D +V +     G                  +  ++ +K  FE+   LKIGHN+
Sbjct: 403 LRHGATNDSAVGSGVAVQGGLNFSDDDTPAHYPQLDFETAMAEIKPLFEDPAVLKIGHNL 462

Query: 470 KYDKLVLHR---YGISMRGFEDIMLMSYVLDSGR-SSHDIASIAQKWLSY---TRKEILK 522
           KYD  VL R    GI++   +D M +SYVLD GR   H +  +A  WL Y      ++  
Sbjct: 463 KYDAHVLMRPRNGGINLAPVDDTMCLSYVLDGGRVERHSMDYLAGHWLDYTTIKFSDVCG 522

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                IP  +++     ++A E++++ L+LW++L+P+L  EK+  VYERL++P+I V++Q
Sbjct: 523 KGAKQIPFSELAPEAALDYAAEDADITLRLWMILKPRLAGEKVASVYERLERPLIPVLAQ 582

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D+ +L ++S + +  + +L ++I  L+GE FN++SPKQLG+ILF K+    G
Sbjct: 583 MENYGITVDRSILARMSNDFATRMEALAQDILALAGEDFNIASPKQLGEILFDKMGLQGG 642

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            K KTG + T+A  LE +      I   +L+WR L+K+KSTYAD+L   I   T RVHT 
Sbjct: 643 KKAKTGAYSTSADVLEDLAASGVEIASKVLDWRHLAKLKSTYADALVECILPATGRVHTS 702

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           +S+    TGRL+S +PN+QNIPI+T  G++IR AFI+    KLIS DYSQIELR++AH+A
Sbjct: 703 FSMVGASTGRLSSSDPNVQNIPIRTSEGRQIRTAFIAAEGCKLISVDYSQIELRLVAHVA 762

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               + + F++ +DIH   A+E+FG+ ++++  + RR AK INF IIYGIS F LA QL 
Sbjct: 763 GEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSETRRRAKAINFGIIYGISAFGLARQLS 822

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP+ EA DYI  YF  FPGI  Y+E+ K   R++G+VET+FGRRIH   +    ++ R  
Sbjct: 823 IPQGEARDYIASYFENFPGIRAYMERIKTEAREDGFVETLFGRRIHITGMAGGSAAHRGF 882

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAPIQGSAADI +RAMI +  +L+   +   MLLQ+HDEL+FE P  +   A +
Sbjct: 883 AERQAINAPIQGSAADIIKRAMIRIPPALQAADIRADMLLQVHDELIFEAPAADADNAVK 942

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            I   ME A  P ++L+VPL     ++++W + +
Sbjct: 943 HITRIMEAAAAPVVDLKVPLVAEAGIADSWADAH 976


>gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 921

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/980 (40%), Positives = 573/980 (58%), Gaps = 68/980 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK-ESIASH 60
             + HL L+DGS +I+RA++  P L+ K  GLP  A+ GF  MLWKL++N RK +   +H
Sbjct: 5   SDKPHLILIDGSGYIFRAYHRLPPLTNKA-GLPAGAVYGFTTMLWKLVENIRKQDDAPTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           FAVIFD    +FR ++YP YKA+RP  PE L+PQ PL+R AT+AF +P+IE +G EADDI
Sbjct: 64  FAVIFDSSRKSFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA Y+ +A + GF VT+ S+DKDLMQL+ P   L+D V    I  E V+KK+G+ PEK+ 
Sbjct: 124 IACYSRVALERGFQVTVYSSDKDLMQLIQPRLNLFDPVNNCLIGSEQVVKKFGVVPEKLG 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GDS DNIPG+PG+G KTA+ L+ EYGNL  IL +A  IKQ K R+N++EY ETA
Sbjct: 184 DLLALMGDSADNIPGVPGVGPKTASRLINEYGNLSEILESAPEIKQPKLRQNLIEYKETA 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+LV L  D P+  PL++L+++  +   L  FL    F+ L+ R             
Sbjct: 244 ILSRELVALVDDKPLPEPLDNLVVKGVDMTPLRDFLSEQGFSSLLAR------------- 290

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                                      +  P     + +   S 
Sbjct: 291 ---------------------------------------AGGGQSAPVADGSKEMAASSS 311

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              + D+Y  +++ K + +W+  +   G  +    TD +DA  ++ + +++ST   K   
Sbjct: 312 QSFDPDAYETVIDEKALDRWIADIYQKGQVAVDTETDNLDATQARLVGVSLSTEAGK--- 368

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                 I      H   D          ++  LK   E+   LKIG NIKYD +VL RYG
Sbjct: 369 ---ACYIPCGHGGHDLLDQKPDQMDLSLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRYG 425

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
           IS++ F+D ML+SY LD+GR  H +  ++  +  +     K +  + KS+I  + +    
Sbjct: 426 ISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPA 485

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E++++  +LW LL+P+L  +    +YE +D+P+  V+++ME  GI +D   L  
Sbjct: 486 ATRYAAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHH 545

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S+  + ++  LEE IY L+G +F +SSPKQLG++LF  +    G K+K+GQ+ T   +L
Sbjct: 546 LSSRFAHDISRLEEEIYVLAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTEL 605

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++      I   ILEWRQLSK+KSTY+D+L   +N  T RVHT +SL    TGRL+S +
Sbjct: 606 ERLAAEGEVIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRLSSTD 665

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T++G++IR AFI+     L+SADYSQIELR+ AH+A    L Q F+   DI
Sbjct: 666 PNLQNIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDI 725

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H + A ++FG     V  + R  AKTINF+I+YGIS + LA +L I R  A + I RYF 
Sbjct: 726 HALTAKQLFG----HVDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYFE 781

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RFP I  YI++T +FVR +GYVET FGR+ H   I S K + R   ER AINAPIQG +A
Sbjct: 782 RFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMSA 841

Query: 898 DITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI +RAM+ +  +L    L++ KMLLQ+HDEL+FEVPEE+I  A  +I   M +A LP +
Sbjct: 842 DIIKRAMVRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIV 901

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L V L+V I    +W   +
Sbjct: 902 QLSVDLEVEIGTGTSWGAAH 921


>gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 939

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/982 (39%), Positives = 598/982 (60%), Gaps = 53/982 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR---KESIA 58
             + H++L+DGS +I+RA+YA P L+RK DGLPV A++GFCNML+K L+ SR   K    
Sbjct: 4   NSKKHIYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCNMLYKFLEESRSLDKVDRP 63

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +HFAVIFD     FRN+IY +YKANR   PE L+PQ   +R A +AF I  +E+  +EAD
Sbjct: 64  THFAVIFDTARKNFRNDIYKEYKANRQDTPEDLIPQFSYIRKAVEAFNILGVELANYEAD 123

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IATY   A K+   VTIIS+DKDLMQLV   T + DT+K++ I  E V +K+G+ P+K
Sbjct: 124 DLIATYKEQASKKNIKVTIISSDKDLMQLVDENTFMMDTMKDKYIGKEEVKEKFGVYPDK 183

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +Q+L GDS DNIPG+PGIG KTAA L+ ++G+LE +L NAS IKQ KRR+ +L+  +
Sbjct: 184 VIDVQSLAGDSSDNIPGVPGIGIKTAAELINQFGSLEKVLENASSIKQPKRRQTLLDNKD 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +S+KLV L+ DVP+   L+   L+  +  +++ FL+ +EF +L  ++ + Y   +  
Sbjct: 244 KALISKKLVTLKKDVPVKTSLDEFALKSIDPDKILKFLQEMEFGRLFKKLESDYGKFSGK 303

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P       TE+K  ++E+    D   K                               
Sbjct: 304 ASPQS---KLTESKEPSVESGKLPDVPEK------------------------------- 329

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I    ++ I +  +++  ++K +  G  +    T+++D   +  + I++S    + 
Sbjct: 330 ----IIEKKFSLIFDMSELKSVLKKSDEKGLFAIDTETNSLDTMVANLVGISLSYRPGE- 384

Query: 419 DTSFKVETIFIDLSVHTSQD-STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    +I +      D S  K    K++LS +K + E+    K+G NIKYD  +  
Sbjct: 385 -------AFYIPIGHQNKSDPSIKKQLKLKDVLSVIKPYLEDPTVKKVGQNIKYDYRIFL 437

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           ++GI M   ED MLMSY LD+G++ H +  +++  L++     K++    KS +  D + 
Sbjct: 438 KHGIQMNSIEDTMLMSYSLDAGKNRHGMDLLSELHLNHKTISFKDVAGIGKSQVTFDFVD 497

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q +++A E++++ L+L+ +   +L  E +L VY+ L+KP+I ++S +E  GI+ID+++
Sbjct: 498 IEQAKDYACEDADITLRLYKMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNI 557

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+++S +    + +LE+ I+ ++ E+FN+ SPKQLGD+++ KLK     KTK G + T  
Sbjct: 558 LEKLSKKFEIEIQNLEKKIFKIAKEEFNIGSPKQLGDVIYEKLKIAGSKKTKKGNFATNV 617

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE +    +   K +L WRQ SK+K+TY D+LP +IN +++RVHT + LA+T TGRLA
Sbjct: 618 AVLEDLASQGHEFPKLVLNWRQKSKLKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLA 677

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPIK   G++IR AF+S    KLISADYSQIE+RILAH+  +  L + F N 
Sbjct: 678 SANPNLQNIPIKNIEGKEIRSAFVSDKNSKLISADYSQIEMRILAHMGDVKELKKAFLNK 737

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A++IF V+++KV   MRR AK INF IIYGIS + LA Q+ +  SEA +++K 
Sbjct: 738 EDIHTLTASQIFDVSLKKVDEDMRRKAKAINFGIIYGISSYGLAKQISVSNSEAENFLKS 797

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF +FP I +++ +   F R+NGYV+T+F R+ H+  IN    ++R   ERA INAPIQG
Sbjct: 798 YFGKFPEIRDFMNENITFCRKNGYVKTLFDRKCHFPNINDKNHTLRTFQERACINAPIQG 857

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ R AMI + K +   ++   +L+Q+HDEL+ E  E+++++  Q I H ME A  P
Sbjct: 858 TAADLLRLAMIQIDKKISAKEIPASLLIQVHDELLLECKEKDVSSVQQKIAHEMENASEP 917

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            +   +PL V++K   NW E +
Sbjct: 918 LVKFSIPLTVDVKSGKNWSEAH 939


>gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024]
          Length = 881

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/933 (36%), Positives = 522/933 (55%), Gaps = 68/933 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           QG+AADI +RAMI+V   L+  +   +M++Q+H
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVH 881


>gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ]
 gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ]
          Length = 908

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/988 (35%), Positives = 527/988 (53%), Gaps = 92/988 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S 
Sbjct: 1   MT-QTPLVLVDGSSYLYRAFHALPPLAT-SGGTPTGAVKGVLNMLLAL----RKQYPDSP 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           FAV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + ++G EADD+
Sbjct: 55  FAVVFDAKGPTFRDELFEHYKSHRPPMPDDLRVQIEPLHACVRALGLPLLCVEGVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    +  +G  V I + DKD+ QLV     L +T+    +D   V +K+G+ PE ++
Sbjct: 115 IGTLARGSALDGRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDHAGVAEKFGVGPELII 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRI------KQKKRRENI 233
              AL GD +DNIPG+PG+G KTA  LLQ  G   + I  N  R+        K     +
Sbjct: 175 DYLALMGDKVDNIPGVPGVGEKTALGLLQGLGGGLDTIYANLERVATLPIRGAKSLAAKL 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E+ E A LS +L  ++TDV + I ++ L     +   LI+  + L              
Sbjct: 235 EEHREMAYLSHRLATIKTDVALDIEIDALHPAAPDREALIALYREL-------------- 280

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                                  E +   D  ++ +  +  +   +   +          
Sbjct: 281 -----------------------EFKSWLDELLREAHAAGPTADPAAPGT---------- 307

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  +++ +    W+ KL+  G  +F   T ++DA  ++ + ++ + 
Sbjct: 308 -------------HYETLLDRERFAAWLDKLKQAGLIAFDSETTSLDAQQAELVGLSFAV 354

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               +     +   ++ +     +D+         +L+ L+   E+    K+G + KYD 
Sbjct: 355 AP-LEAAYIPLAHSYMGVPDQLDRDA---------VLAALRPILEDPARAKVGQHAKYDM 404

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIP 529
            VL  YGI +RG   D ML SYVLDS  + HD+ S+A K+L       ++I       + 
Sbjct: 405 NVLAHYGIEVRGVAYDTMLESYVLDSTATRHDMDSLALKYLGQGTIRFEDIAGKGAKQLT 464

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL     L  V + ++ P++ V++++E  G 
Sbjct: 465 FDQIALEQAGPYAAEDADVTLRLHQCLWQKLEAIPALAKVLKEIEMPLVPVLARIERHGA 524

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D  LL + S E+ + L  LE   ++L+GE FNL+SPKQLG IL+ KL  P  +KT  G
Sbjct: 525 LVDAKLLGEQSLELGEKLQQLEREAHELAGEPFNLASPKQLGAILYDKLGLPVLSKTAKG 584

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L  +     P+ + I+  R L+K+K TY D LP  IN RT R+HT Y  A T
Sbjct: 585 QPSTAESVLADLAEQGYPLPQVIMRHRSLNKLKGTYTDKLPQQINPRTGRIHTSYHQAVT 644

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   +L++ADYSQIELRI+AH+A+ T L 
Sbjct: 645 ATGRLSSSDPNLQNIPIRTTEGRRIRQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSLL 704

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F N LD+HR  AAE+FGV  E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 705 HAFRNDLDVHRATAAEVFGVAPEAVSADQRRSAKAINFGLIYGMSAFGLARQIGVERKEA 764

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + GYVET+FGRR++  EI+S   ++R   ER AI
Sbjct: 765 QAYIDRYFARYPGVLAYMERTRAQAAEQGYVETLFGRRLYLPEIHSKNGALRKAAERTAI 824

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QGSAADI +RAM++V   L +  L  +M+LQ+HDELV EV E+++      ++  M
Sbjct: 825 NAPMQGSAADIIKRAMVTVDAWLLESGLDARMILQVHDELVLEVREDQVEALKAGLLPRM 884

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A      L VPL V   V  NW E +
Sbjct: 885 SGAAA----LDVPLLVEAGVGGNWDEAH 908


>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
 gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
          Length = 910

 Score =  946 bits (2444), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/977 (36%), Positives = 530/977 (54%), Gaps = 73/977 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L R   G P  A+ G  NML +L     K+  A + A +
Sbjct: 2   KTLLLVDGSSYLYRAFHALPDL-RNKAGEPTGAMYGVLNMLRRL----HKDYPADYSACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++IYPDYKA+RP +P+ L  Q+  +  A +A G P + I G EADD+I   
Sbjct: 57  FDAKGKTFRDDIYPDYKAHRPPMPDDLSRQIEPLHEAIRAMGWPLLMIDGVEADDVIGCL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AE +G  V I + DKD+ QLV+P   L +T+  E +D   V  K+GIPP  ++    
Sbjct: 117 AQQAEAQGMQVVISTGDKDMAQLVTPHIKLVNTMTNEILDEAGVEAKFGIPPSLIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DN+PG+  +G KTA   L ++G+L+NI+ NA+ I       N+ +  +     R
Sbjct: 177 LIGDSVDNVPGVEKVGPKTAVKWLTQHGSLDNIIANAANI-GGVVGNNLRKALDWLPTGR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L+ +R  + +   +  L+ +  +  +L    +  EF      +                
Sbjct: 236 ELIKIRCRLDLPHMVTELVTQPADNAKLAELYERFEFNTWRREL---------------- 279

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                      S+     ++I+    P  LF      +      
Sbjct: 280 ------------------------DAASTAGTAPARIDPSSAPGDLFSASATHI------ 309

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              +  I++   + +W+  L++    +    T ++D   +K + ++ S    K       
Sbjct: 310 GREFETILDQASLDRWLLLLKSAPLVALDTETTSLDPMQAKLVGMSFSVEAGK------- 362

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++ L+   +     +       L  L+   E+    K+G N+KYDK VL  +GI++ 
Sbjct: 363 -AAYVPLAHDYT--GAPQQLDFTAALRQLRPMLEDASIPKLGQNLKYDKHVLANHGIALN 419

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G   D +L SYVL+S R+ H +  +A + L       ++I       +P  +IS     E
Sbjct: 420 GITHDTLLQSYVLESHRT-HGMDDLAMRHLGVQTVTYEQIAGKGAKQVPFSQISIETAAE 478

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ LQL   L P++  + KL  VY  ++ P++D++  +E  G+ IDQ +L+  S
Sbjct: 479 YAAEDADITLQLHQALYPQIEADDKLAFVYREIEMPLLDILYTIERNGVLIDQAMLQAQS 538

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            EI + L+ LE+  YD++G+ FNL SPKQL +ILF KL      KT +G    T +D+ Q
Sbjct: 539 HEIGQKLIDLEQQAYDIAGQPFNLGSPKQLQEILFGKLGIKPLKKTPSGAPS-TDEDVLQ 597

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D P+ K +LE+R L+K+KSTY D LP  IN  T RVHT YS A  +TGRLAS +PN
Sbjct: 598 ELALDYPLPKVLLEYRGLAKLKSTYTDKLPRMINPATGRVHTSYSQAVAITGRLASSDPN 657

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T  G++IR AFI+PP   +ISADYSQIELRI+AH+++   L   F    DIHR
Sbjct: 658 LQNIPVRTAEGRRIREAFIAPPGASIISADYSQIELRIMAHLSQDEGLLSAFAKGEDIHR 717

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAEIFGV  ++VS + RR+AK INF +IYG+S F LA  L I R  A +YI RYF R+
Sbjct: 718 ATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMSAFGLAQNLNIERGAAQNYIDRYFARY 777

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ EY++ T+   ++ GYVET FGRR+   EINSP    R   ERAAINAP+QG+AAD+
Sbjct: 778 PGVREYMQNTRMLAKEQGYVETFFGRRLWVPEINSPNGMRRAGAERAAINAPMQGTAADL 837

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V + L +H L +K+++Q+HDELV EVP+ E+    Q +   M+        L 
Sbjct: 838 IKLAMIAVDRWLREHNLNSKIIMQVHDELVLEVPDAELELVQQTLPQLMQGVA----KLD 893

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL   + V  NW+  +
Sbjct: 894 VPLLAEVGVGKNWEAAH 910


>gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp]
 gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp]
          Length = 931

 Score =  946 bits (2444), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/989 (35%), Positives = 538/989 (54%), Gaps = 74/989 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 57  VVFDAKGGTFRDELFAEYKANRPSMPDELRVQVEPLHASVRALGLPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A  +   V I + DKD+ QLV P   L +T+     D   V +K+G+ PE ++  
Sbjct: 117 TLARQAAAQQRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDEGGVKEKFGVGPELIIDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENIL 234
            AL GD +DNIPG+PG+G KTA  LL          Y NL+ +     R   K     + 
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTALGLLVGVGGGLDVLYANLDKVPELPIR-GAKSLPAKLE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E+ E A LS +L  ++TDVP+ I ++ L   + +   L+     LEF   ++ +      
Sbjct: 236 EHREMAYLSYQLATIKTDVPLNIEIDSLHPGEPDQATLVQLYGELEFKAWLDELLRQNKA 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            AA       D+                        F+  +   ++  +E  P       
Sbjct: 296 LAAKAAVPAGDL------------------------FAEPAGPAAEETAETPP------- 324

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                   +    Y  ++       W++KL+     +F   T ++DA  ++ + ++ +  
Sbjct: 325 --------MGAGDYELVLEQAQFDAWLKKLQQAELIAFDSETTSIDAQQAQLVGLSFAVK 376

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
              +     +   ++ +     +D+         +L  LK   E+    K+G + KYD  
Sbjct: 377 AG-EAAYVPLAHSYMGVPQQLDRDA---------VLKALKPILEDPAKAKVGQHAKYDIN 426

Query: 475 VLHRYG--ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           VL      I+++G   D ML SYVLDS  + HD+ S+A K+L +     ++I       +
Sbjct: 427 VLANASTPIAVQGVAFDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGRGAKQL 486

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             D+I+  Q   +A E+++V L+L   L  +L     L  V   ++ P++ V++++E  G
Sbjct: 487 TFDQIALEQAGPYAAEDADVTLRLHQELWGRLEAVPSLAKVLREIEIPLVPVLARIERNG 546

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D  LL + S E+ + L+ LE   ++++GE+FNL+SPKQLG IL+ KL +P  +KT  
Sbjct: 547 ALVDAKLLGEQSVELGEKLVELERKAFEIAGEEFNLASPKQLGVILYEKLGYPVISKTAK 606

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L ++   D  + K ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 607 GQPSTAEAVLAELAEQDFELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAV 666

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIPI+T  G++IR+AF++P   K+++ADYSQIELRI+AH+AK   L
Sbjct: 667 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKMMAADYSQIELRIMAHLAKDEGL 726

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F + LD+H+  AAE+FGV +E+V+   RR AK INF +IYG+S F LA Q+ + R E
Sbjct: 727 LDAFRHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVERKE 786

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI RYF R+PG+  Y+E+T+    + GYVET+FGRR++  EI++   ++R   ERAA
Sbjct: 787 AQAYIDRYFARYPGVLSYMERTRAQAAEQGYVETVFGRRLYLPEIHAQNQAMRKGAERAA 846

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAMI+V   L+   +  +++LQ+HDELV EV E+ +      +   
Sbjct: 847 INAPMQGTAADIIKRAMIAVDDWLQGSGIDARIILQVHDELVLEVREDLLEEVGAQLKAL 906

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M  A      L VPL V + V  NW E +
Sbjct: 907 MGGAA----QLDVPLLVEVGVGANWDEAH 931


>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 917

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/985 (35%), Positives = 538/985 (54%), Gaps = 83/985 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRAF+A P L R  +G P  AI G  NML +L ++      A +
Sbjct: 7   MNK--TLLLVDGSSYLYRAFHAMPDL-RGPEGAPTGAIYGMINMLRRLRKDY---PDAEY 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+++Y +YKA R  +P+ L+ Q+  +  A +A G P + + G EADD+
Sbjct: 61  MACVFDAKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDV 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT    A   G    I + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V
Sbjct: 121 IATLAVAAVGHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIV 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GD++DN+PG+  +G KTA   L +YG L+ I+ +A+ IK     EN+    +  
Sbjct: 181 DYLTLVGDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIKG-VVGENLRRALDWL 239

Query: 241 RLSRKLVMLRTDVPITIP----LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             ++ L+ ++TD  ++       E L  +  +   +++F K   F   +  +        
Sbjct: 240 PQAKVLITVKTDCDLSAHMTEIPESLTQKTEDIEAMVAFFKRNGFKSWLREL-------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                       T KT   +S +     +  E TP+        
Sbjct: 292 ----------------------------TEKTEMPASATAPQGALFGEDTPE-------- 315

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +    ++ +W+QK+      +    T +++   ++ + I++     
Sbjct: 316 -------VEKHYETVWTEANLDRWLQKINAAELTAIDTETTSLEPMQAQLVGISLCCEPG 368

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  V   + D+ +  S+ S         +L  L+ + E++   K+G N+KYD  + 
Sbjct: 369 V-AAYIPVAHRYQDVPLQLSRAS---------VLEKLRSWLEDDSKPKVGQNLKYDSHIF 418

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             +G+++RG   D +L SYV +S RS HD+ S+A + L+    T +++     S +  D+
Sbjct: 419 ANHGVTLRGIVHDTLLQSYVFESHRS-HDMDSLALRHLNRKTMTFQDVCGKGASQLCFDQ 477

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  ++  E+A E++++ LQL   + P +  +  L  VYE+++ P   V+ ++E  G+ ID
Sbjct: 478 VDIARATEYAAEDADITLQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLID 537

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LL   S E+ K +L +E+  Y+L+G+ FNL SPKQ+G+I F K+K P   KT +G   
Sbjct: 538 PGLLATQSHELGKRMLEIEQQAYELAGQPFNLGSPKQIGEIFFEKMKLPVVKKTPSGSPS 597

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+++   D P+ K +LE+R LSK+KSTY D LP  I+  T RVHT Y+ A  +TG
Sbjct: 598 TDEEVLQKL-AEDYPLPKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVAVTG 656

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+   G++IR AFI+PP   ++SADYSQIELRI+AHI++   + + F
Sbjct: 657 RLSSNDPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAF 716

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAEIFGV    VS + RR+AK INF +IYG+S F LA  L I R+ A  Y
Sbjct: 717 AEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQSY 776

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++YF+RF G+  Y++ T+   +  GYV+T+FGRR+   EINSP    R   ERAAINAP
Sbjct: 777 IEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAAINAP 836

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AAD+ + AMI+V   LE  KL TKM++Q+HDELV EVPE E+      +   M   
Sbjct: 837 MQGTAADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPELMRNV 896

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL   + V  NW E +
Sbjct: 897 A----QLKVPLIAEVGVGKNWDEAH 917


>gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 911

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/985 (35%), Positives = 538/985 (54%), Gaps = 83/985 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRAF+A P L R  +G P  AI G  NML +L ++      A +
Sbjct: 1   MNK--TLLLVDGSSYLYRAFHAMPDL-RGPEGAPTGAIYGMINMLRRLRKDY---PDAEY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+++Y +YKA R  +P+ L+ Q+  +  A +A G P + + G EADD+
Sbjct: 55  MACVFDAKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT    A   G    I + DKDL QLV+    L +T+  E +D + V+ K+G+PPE++V
Sbjct: 115 IATLAVAAVGHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIV 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GD++DN+PG+  +G KTA   L +YG L+ I+ +A+ IK     EN+    +  
Sbjct: 175 DYLTLVGDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIKG-VVGENLRRALDWL 233

Query: 241 RLSRKLVMLRTDVPITIP----LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             ++ L+ ++TD  ++       E L  +  +   +++F K   F   +  +        
Sbjct: 234 PQAKVLITVKTDCDLSAHMTEIPESLTQKTEDIEAMVAFFKRNGFKSWLREL-------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                       T KT   +S +     +  E TP+        
Sbjct: 286 ----------------------------TEKTEMPASATAPQGALFGEDTPE-------- 309

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +    ++ +W+QK+      +    T +++   ++ + I++     
Sbjct: 310 -------VEKHYETVWTEANLDRWLQKINAAELTAIDTETTSLEPMQAQLVGISLCCEPG 362

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  V   + D+ +  S+ S         +L  L+ + E++   K+G N+KYD  + 
Sbjct: 363 V-AAYIPVAHRYQDVPLQLSRAS---------VLEKLRSWLEDDSKPKVGQNLKYDSHIF 412

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             +G+++RG   D +L SYV +S RS HD+ S+A + L+    T +++     S +  D+
Sbjct: 413 ANHGVTLRGIVHDTLLQSYVFESHRS-HDMDSLALRHLNRKTMTFQDVCGKGASQLCFDQ 471

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  ++  E+A E++++ LQL   + P +  +  L  VYE+++ P   V+ ++E  G+ ID
Sbjct: 472 VDIARATEYAAEDADITLQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLID 531

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LL   S E+ K +L +E+  Y+L+G+ FNL SPKQ+G+I F K+K P   KT +G   
Sbjct: 532 PGLLATQSHELGKRMLEIEQQAYELAGQPFNLGSPKQIGEIFFEKMKLPVVKKTPSGSPS 591

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L+++   D P+ K +LE+R LSK+KSTY D LP  I+  T RVHT Y+ A  +TG
Sbjct: 592 TDEEVLQKL-AEDYPLPKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVAVTG 650

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+   G++IR AFI+PP   ++SADYSQIELRI+AHI++   + + F
Sbjct: 651 RLSSNDPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAF 710

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  AAEIFGV    VS + RR+AK INF +IYG+S F LA  L I R+ A  Y
Sbjct: 711 AEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQSY 770

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++YF+RF G+  Y++ T+   +  GYV+T+FGRR+   EINSP    R   ERAAINAP
Sbjct: 771 IEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAAINAP 830

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AAD+ + AMI+V   LE  KL TKM++Q+HDELV EVPE E+      +   M   
Sbjct: 831 MQGTAADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPELMRNV 890

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL   + V  NW E +
Sbjct: 891 A----QLKVPLIAEVGVGKNWDEAH 911


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/985 (35%), Positives = 525/985 (53%), Gaps = 80/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   NNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA+RP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++        K     I++ A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      L  +  +   LI     +EF + +  V         
Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWLAEV--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                              + +  T    +E T      E  ++
Sbjct: 292 ---------------------------------LDNKAPATVAAKAETT------ETQEE 312

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +        Y  I+    + +W+ KL+     +    T ++D   ++ + ++ +    K
Sbjct: 313 SAPSVTIETQYDTILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGLSFAVEAGK 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+         +    +  L  L+   E+    K+G N+KYD  VL 
Sbjct: 373 --------AAYLPLAHDYV--GAPQQLDKQTALEKLRPLLEDAKIKKVGQNLKYDISVLA 422

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I       +  ++I
Sbjct: 423 NAGIKLQGVVFDTMLESYVFNSIASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFNQI 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  V+  ++ P+I ++S +E  G+ ID 
Sbjct: 483 PLETAAPYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDS 542

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ +  LE   YD++GEKFNLSSPKQL  + F KL +P   KT  G    
Sbjct: 543 MLLGQQSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPS- 601

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 602 TAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 662 LSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFA 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI
Sbjct: 722 EGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 782 DTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPM 841

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMIS+   ++ D +    M++Q+HDELVFEV  ++  T    +   M KA
Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCELMAKA 901

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                NL V L     + +NW + +
Sbjct: 902 A----NLDVELLAEAGIGDNWDQAH 922


>gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
 gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
          Length = 908

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/975 (37%), Positives = 537/975 (55%), Gaps = 75/975 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  AI G  +ML +L  + + E      A +FD
Sbjct: 4   LLLVDGSSYLYRAFHALPDL-RTSKGEPTGAIRGVLSMLRRLESDYKAEFR----ACVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP YKANRP +P+ L  Q+  +  A +A G P + + G EADD+I T T 
Sbjct: 59  AKGKTFRDDWYPQYKANRPSMPDDLRAQVGPLHEAVKAEGWPLLCVDGVEADDVIGTLTR 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A + G+ V I + DKDL QLV P     +T+ +E +D   V  K+G+PP  +V   AL 
Sbjct: 119 RALERGWEVVISTGDKDLTQLVRPGVRWVNTMSDEVLDEAGVAAKFGVPPALIVDYLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+   G KTA   L EYG L+N++ NA ++   K  EN+ ++ E   L ++L
Sbjct: 179 GDTVDNVPGVEKCGPKTAVKWLTEYGTLDNLVANADKV-GGKVGENLRKHLEFLPLGKRL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V + TD+ + I LE L   D +   L +  +  EF   +  +      DA          
Sbjct: 238 VTVATDLALPIQLEDLPARDDDKAALRALYERFEFRGWLQAIDDAAKSDAG--------- 288

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                                   F+  +D  S +                 S+   +  
Sbjct: 289 ----------------------VDFAGKNDGLSPV-----------------SEPGAHRA 309

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I++     +W+ KLE     +F   T ++D   +K + ++ + ++ +         
Sbjct: 310 GYESILDWSTFDRWLAKLEAADLVAFDTETTSLDQMAAKLVGMSFAIVEGE--------A 361

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            ++ L+      +        E+L+ LK + E++   K+G N+KYD  VL  +G+ + G 
Sbjct: 362 AYLPLAHIYP--AAPAQLPLAEVLAKLKPWLESDAHPKLGQNLKYDAHVLANHGLRLGGI 419

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542
             D +L SYVL+S R  HD+ S+A++ L         +       I  D+++  +  E+A
Sbjct: 420 AHDTLLQSYVLESDR-PHDMDSLAKRHLGIDTIPYTAVCGKGVGQICFDQVAIERATEYA 478

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHV-YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E++++ L+L   L P+L     L   Y  ++ P + V+  ME TG+ ID  LL Q S E
Sbjct: 479 AEDADITLRLHRKLWPQLEAAPALAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQSEE 538

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + + L++LE   +DL+G+ FNL SPKQLG+ILF KL  P   KT TGQ  T  + L Q+ 
Sbjct: 539 LGRRLMTLEREAHDLAGQPFNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLAQL- 597

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+KSTY D LP  +N +T RVHT +S A  +TGRLAS EPNLQ
Sbjct: 598 ADDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNAKTGRVHTSFSQAVAVTGRLASSEPNLQ 657

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T  G++IR AFI+P    ++SADYSQIELRI+AH++    L Q F    D+HR  
Sbjct: 658 NIPIRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAEGEDVHRAT 717

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAEIFG+   +V+ + RR+AK INF +IYG+S   LA  L + R+ AA YI RYF R+PG
Sbjct: 718 AAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSAHGLAKNLGLERAAAAAYIDRYFARYPG 777

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+T++  R  GYVET++GRR++  EI + ++  R   ERAAINAP+QG+AAD+ +
Sbjct: 778 VAAYMERTRSEARARGYVETVYGRRLYLPEIRASQAGRRQAAERAAINAPMQGTAADLIK 837

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           +AMI+  + L D  L ++++LQ+HDELV EVP +E+ T    +   M        +L VP
Sbjct: 838 KAMIATRRWLADAALRSRLVLQVHDELVLEVPRDELETVRATLPGLMTGIA----DLSVP 893

Query: 962 LKVNIKVSNNWQEEN 976
           L V +    NW E +
Sbjct: 894 LLVEVGHGENWDEAH 908


>gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01]
 gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01]
          Length = 960

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/989 (35%), Positives = 541/989 (54%), Gaps = 70/989 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FA
Sbjct: 27  SQAPLVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSPFA 81

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 82  VVFDAKGGTFRDELFAEYKANRPSMPDELRVQVEPLHASVRALGLPLLCVEGVEADDVIG 141

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A  E   V I + DKD+ QLV P   L +T+     D + V +K+G+ PE ++  
Sbjct: 142 TLARQAAGEKRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDADGVKEKFGVGPELIIDY 201

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENIL 234
            AL GD +DNIPG+PG+G KTA  LL          Y NL+ +     R   K     + 
Sbjct: 202 LALMGDKVDNIPGVPGVGEKTALGLLVGVGGGLDVLYANLDKVPELPIR-GAKGLPAKLE 260

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E+ E A LS +L  ++TDVP+ I ++ L   + +   L+     LEF   ++ +      
Sbjct: 261 EHREMAYLSYQLATIKTDVPLNIEIDSLHPGEPDQAALVELYGQLEFKNWLDDLLRQNKA 320

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            AA       D+                                    +E T + +    
Sbjct: 321 LAAKAAAPAGDL-----------------------------------FAEPTGEAVEEAA 345

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            +     P +   Y  ++    +  W+QKL+     +F   T ++DA  ++ + ++ +  
Sbjct: 346 EEAAEPAPASAGDYQLVLEQAQLDAWLQKLKQAELIAFDSETTSIDAQQAQLVGLSFAVK 405

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
              +     +   ++ +     +D+         +L+ LK   E+    K+G + KYD  
Sbjct: 406 AG-EAAYIPLAHSYMGVPQQLDRDA---------VLNALKPILEDPAKAKVGQHAKYDIN 455

Query: 475 VLHRYG--ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528
           VL      I ++G   D ML SYVLDS  + HD+ S+A K+L++     ++I       +
Sbjct: 456 VLANASTPIMVQGVAFDTMLESYVLDSTATRHDMDSLALKYLNHSTIRFEDIAGKGAKQL 515

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             D+I+  Q   +A E+++V L+L   L  +L     L  V   ++ P++ V++++E  G
Sbjct: 516 TFDQIALEQAGPYAAEDADVTLRLHQELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNG 575

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D  LL + S E+ + L+ LE   ++++GE+FNL+SPKQLG IL+ KL +P  +KT  
Sbjct: 576 ALVDAKLLGEQSVELGEKLVELERKAFEIAGEEFNLASPKQLGVILYEKLGYPVISKTAK 635

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L ++   D  + K ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 636 GQPSTAEAVLAELAEQDYELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAV 695

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L
Sbjct: 696 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLMAADYSQIELRIMAHLAKDEGL 755

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F   LD+H+  AAE+FGV +++V+   RR AK INF +IYG+S F LA Q+ + R E
Sbjct: 756 LDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVERKE 815

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI RYF R+PG+  Y+E T+    + GYVET++GRR++  EI++   ++R   ERAA
Sbjct: 816 AQAYIDRYFARYPGVLTYMESTRAQAAEQGYVETVYGRRLYLPEIHAQNQAMRKGAERAA 875

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAMI+V   L+D  +  +++LQ+HDELV EV EE I   S  +   
Sbjct: 876 INAPMQGTAADIIKRAMIAVDGWLQDSGIDARIILQVHDELVLEVREELINEVSAKLKSL 935

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M  A     +L VP+ V + V  NW E +
Sbjct: 936 MSGAA----DLDVPMLVEVGVGANWDEAH 960


>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 933

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/977 (36%), Positives = 536/977 (54%), Gaps = 52/977 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+ +Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
             A  +G +VTI + DKD  QLV P   L +T+   ++D    VI K+G+ P+++V L A
Sbjct: 117 LQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGDNLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++TDV +      L L + N   L        FT+ +  +           EPV L
Sbjct: 236 ELVTIKTDVTLASGPRALDLREPNTETLAVLYARYGFTQALRELGGASAQSGLLSEPVAL 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  +    E    R T   +   ++  D    +++                     
Sbjct: 296 GAAAATART---EPGRARGTGFVSGPVNAAVDLDPALSA--------------------- 331

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++    K       
Sbjct: 332 PGAYETILTQEQLDSWIAQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGK------- 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++    +               L+ L     +    K+G + KYD  V+ R+G+ + 
Sbjct: 385 -AAYLPFGHNFP--GAPVQLDRTHALAQLAPLLTDPAVRKVGQHGKYDLHVMRRHGVELA 441

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS      
Sbjct: 442 GYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATR 501

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L PKL  E  L  VY  ++ P++DV++++E  G+ +D   L++ S
Sbjct: 502 YAAEDADITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQS 561

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T +D  +
Sbjct: 562 ADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEDALE 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R LSK++STY D LP  I+ ++ RVHT Y  A   TGRL+S +PN
Sbjct: 621 AIADQHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN 680

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   F +  D+HR
Sbjct: 681 LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHR 740

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+ V   + DH    KM+LQ+HDELVFE   + + T    +   M  A      LR
Sbjct: 861 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMASAA----ELR 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V ++W + +
Sbjct: 917 VPLVVDSGVGDDWDQAH 933


>gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
 gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
          Length = 921

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/985 (35%), Positives = 547/985 (55%), Gaps = 80/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDGSS++YRAF+A P L     G P  A+ G   ML KL+    K+    + AV
Sbjct: 5   EKPIILVDGSSYLYRAFHALPPLVTSS-GQPTGAVRGVAAMLRKLI----KDYDPQYMAV 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E++ +YK+ RP +P+ L  Q+  +    +A G+P I   G EADD+I T
Sbjct: 60  IFDAKGKTFRDEMFEEYKSQRPPMPDDLREQVTPLHDLIRAMGLPLIIEDGVEADDVIGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           Y  I   +G  V I + DKD+ QLV+    L +T+ +   DI+ V KK+G+ PE ++   
Sbjct: 120 YARIFGSQGKPVLISTGDKDMAQLVTEQVTLINTMNDALYDIDGVKKKFGVGPELIIDFL 179

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G+LE I  N  ++        K   + + +  
Sbjct: 180 ALMGDKVDNIPGVPGVGEKTALGLLQGLGSLETIYDNLDKVADLSFRGAKTLGKKLEDNK 239

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++ D  ++  L  L L+  +  +L  + ++LEF   ++ +    D  A 
Sbjct: 240 EMAFLSYQLATIKLDCDVSDDLNELKLQTPDAEKLAEYYRSLEFKGWLSELLEGQDPAA- 298

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E+ G  +E E D ++ +                               
Sbjct: 299 ------------EDAGKKVELEADSESVLS------------------------------ 316

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ + Y  +++   +  W+  L+     +    T +++   ++ + ++++    K
Sbjct: 317 -----IDKEGYETVLDETALNAWIDALKNADVFALDTETTSLNYMQAELVGVSVAVEAGK 371

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     +I    +            + +L  LK   E+++  K+G N+KYD  VL 
Sbjct: 372 --------AAYIPFGHNYP--GAPDQLDKQFVLDALKPILEDDNLKKVGQNLKYDMSVLA 421

Query: 478 R-YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
              GI++RG   D ML SYVLDS  + HD+ S+A K+L     + +EI       +  ++
Sbjct: 422 EDVGITLRGVAYDTMLESYVLDSVATRHDMDSLALKYLGRKTISFEEIAGKGAKQLTFNQ 481

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQID 591
           +   +   +A E+++V L+L   L PKL  E  L  V+  ++ P++ V+S++E  G  +D
Sbjct: 482 VGLHEASRYAAEDADVTLRLHQTLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVD 541

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             LLK  S  ++K +  L+E   +++G++FNLSSPKQLG+IL+ KL+ P   KT  G   
Sbjct: 542 ATLLKHQSQFLAKRMAELQEKACEIAGQEFNLSSPKQLGEILYQKLEIPVIKKTPKGAPS 601

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            TA+ + Q    + P+ + I+++R ++K+K+TY D LP  IN+RT RVHT Y  A   TG
Sbjct: 602 -TAEAVLQELALEYPLPQVIMDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAVAATG 660

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++++ G+KIR+AF++P  +K+++ DYSQIELRI+AH++    L   F
Sbjct: 661 RLSSSDPNLQNIPVRSEEGRKIRQAFLAPKGRKIVACDYSQIELRIMAHLSDDKGLTDAF 720

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           E  LDIHR  AAE++G  +++VS   RR+AK INF +IYG+S F LA QL +PR EA +Y
Sbjct: 721 EKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAFGLAKQLGLPRKEAQEY 780

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R+PG+ +Y+  T+     NGYVET++GRR++  EI+S     R   ERAAINAP
Sbjct: 781 IDLYFERYPGVKKYMADTRALAADNGYVETVYGRRLYLPEIHSKNGQRRQAAERAAINAP 840

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI ++AMI VH  LE      KM++Q+HDELVFEV E+++    + +   ME A
Sbjct: 841 MQGTAADIIKKAMIKVHDWLETTDFDAKMIMQVHDELVFEVAEDQVDDLVREVKARMESA 900

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL V+  +  NW+E +
Sbjct: 901 A----ELKVPLIVDAGIGENWEEAH 921


>gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327]
          Length = 884

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/944 (36%), Positives = 523/944 (55%), Gaps = 71/944 (7%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML  L+   +     +H AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +
Sbjct: 1   MLRSLIMQYK----PTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVK 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI 163
           A G+P + + G EADD+I T    AEK G  V I + DKD+ QLV+P   L +T+    +
Sbjct: 57  AMGLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTIL 116

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
             E V+ K+G+PPE ++   AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +
Sbjct: 117 GPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEK 176

Query: 224 IKQ------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           I        K     + +  E A LS +L  ++TDV + +  E L ++      L+   K
Sbjct: 177 IAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFK 236

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
             EF +    V       A   +P                            Q +S++D+
Sbjct: 237 KYEFKRWTADVEAGKWLQAKGAKPAAR------------------------PQETSVADE 272

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
             ++ +                   I+ D+Y  I++ + +++W+ KLE     +F   TD
Sbjct: 273 APEVTA-----------------TVISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETD 315

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           ++D   +  + ++ +           V   ++D                +  L  LK   
Sbjct: 316 SLDNISANLVGLSFAIEPGV-AAYIPVAHDYLDAP---------DQISRERALELLKPLL 365

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           E+E  LK+G N+KYD+ +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL + 
Sbjct: 366 EDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHK 425

Query: 517 ---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERL 572
               +EI    K+ +  ++I+  +   +A E+++V LQL L + P L   K  L+V+E +
Sbjct: 426 TITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENI 485

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P++ V+S++E  G++ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  I
Sbjct: 486 EMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTI 545

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF K       KT  G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  I
Sbjct: 546 LFEKQGIKPLKKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMI 604

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N +T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQ
Sbjct: 605 NPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 664

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+
Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGM 724

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I
Sbjct: 725 SAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDI 784

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S   + R   ERAAINAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV
Sbjct: 785 KSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEV 844

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ++++   ++ I   ME        L VPL V +    NW + +
Sbjct: 845 HKDDVDAVAKQIHQLMENCT----RLDVPLLVEVGSGENWDQAH 884


>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
 gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
          Length = 927

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/985 (35%), Positives = 529/985 (53%), Gaps = 72/985 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+         + A +
Sbjct: 2   KRLILIDGSSYLYRAFHALPPLTNAA-GEPTGALFGVVNMLRATLKEK-----PDYVAFV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D P  TFR+++YP YKANRP +P+ L  Q+  +     A GI  + + G EADD+I T 
Sbjct: 56  VDAPGKTFRDDLYPQYKANRPPMPDELRAQVQPMCDIVHALGIDILRVDGVEADDVIGTL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLV-------SPTTCLYDTVKEEKID-IEHVIKKWGIPP 176
              A   G  VTI + DKD  QLV         +  L +T+   ++D    VI+K+G+P 
Sbjct: 116 ATQAADAGMEVTISTGDKDFAQLVRAPDGNGGGSIALVNTMTGSRMDSDAAVIEKFGVPA 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++V L AL GD+IDN+PG+   G KTAA  + E+G+LE ++  A  IK  K  +N+   
Sbjct: 176 GRIVDLLALMGDTIDNVPGVEKCGPKTAAKWIGEHGSLEGVIAAAPGIKG-KIGDNLRAA 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +   L+R+LV +RTDVP+    E L+L + +  +L        F + +  +      + 
Sbjct: 235 LDRLPLNRELVTIRTDVPLEQGPEALVLRERHVDQLRGLYARYGFNQALREL------EG 288

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             +   V +      +G                                          +
Sbjct: 289 GTVGAEVAEKEPGRARGTGF-------------------------------ATATAAAPE 317

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L         Y  +   + +Q W+  L   GS +    TD++D   ++ + ++ +    
Sbjct: 318 GLDPALAAPGQYETVTTVEQLQAWIATLRAAGSFALDTETDSLDPMRARLVGLSFAAEPG 377

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++ L               ++ L  L+    +    KIG + KYD  VL
Sbjct: 378 R--------AAYLPLGHDYP--GAPAQLGYEQALDLLRPLLADPAVRKIGQHGKYDLHVL 427

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            R+G+++ G+ +D +L S+VLDSG + HD+ S+A + L Y     ++I       IP  +
Sbjct: 428 RRHGVAVAGYADDTLLESFVLDSGNARHDMDSLALRHLGYTTVKYEDICGKGVRQIPFSQ 487

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
            +      +A E++++ L+L  +L  +L  E +L  VY  ++ P++ V+ ++E  G+ +D
Sbjct: 488 CALDDATRYAAEDADITLRLHRVLSARLQAEPQLQAVYRDIEMPLVQVLERIEANGVLVD 547

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D L++  A++S+ +L  +E    L+G  FNL SPKQL  +LF +LK P+  KT  GQ  
Sbjct: 548 MDELRRQGADLSRRMLEAQERATALAGRSFNLDSPKQLCALLFDELKLPALVKTPKGQPS 607

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            T ++  +     + + + ILE+R L+K++STY D LP  +N  T RVHT Y  A   TG
Sbjct: 608 -TNEEALEAIADLHELPRIILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGAATG 666

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+TD G++IRRAF++PP +KL++ DYSQIELRI+AH+++   L   F
Sbjct: 667 RLSSSDPNLQNIPIRTDDGRRIRRAFVAPPGRKLVACDYSQIELRIMAHLSQDPGLLGAF 726

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIHR  AAE+FG  +E+V+   RR AK INF ++YG+  F LA QL I R +A DY
Sbjct: 727 ASGADIHRATAAEVFGRPLEEVTVNERRAAKAINFGLMYGMGAFGLARQLGIDRGQAQDY 786

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R+PG+ +Y+E+T+   R+ GYVET+FGRR+H + IN+  ++ R   ERAAINAP
Sbjct: 787 IALYFSRYPGVRDYMERTREQARERGYVETVFGRRLHLEYINARNAAQRAGAERAAINAP 846

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AADI +RAMI+V   + DH    +MLLQ+HDELVFE  EE +      +   M  A
Sbjct: 847 MQGTAADIIKRAMIAVDAWIADHAQRARMLLQVHDELVFEADEEFVPELVSRVPELMSAA 906

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L VPL V+  + NNW E +
Sbjct: 907 G----DLSVPLVVDTGIGNNWDEAH 927


>gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 884

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/944 (36%), Positives = 523/944 (55%), Gaps = 71/944 (7%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML  L+   +     +H AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +
Sbjct: 1   MLRSLIMQYK----PTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVK 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI 163
           A G+P + + G EADD+I T    AEK G  V I + DKD+ QLV+P   L +T+    +
Sbjct: 57  AMGLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTIL 116

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
             E V+ K+G+PPE ++   AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +
Sbjct: 117 GPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEK 176

Query: 224 IKQ------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           I        K     + +  E A LS +L  ++TDV + +  E L ++      L+   K
Sbjct: 177 IAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFK 236

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
             EF + I  V       A   +P                            Q +S++D+
Sbjct: 237 KYEFKRWIADVEAGKWLQAKGAKPAAK------------------------PQETSVADE 272

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
             ++ +                   I+ D+Y  I++ + ++ W+ KLE     +F   TD
Sbjct: 273 APEVTA-----------------TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETD 315

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           ++D   +  + ++ +           V   ++D                +  L  LK   
Sbjct: 316 SLDNISANLVGLSFAIEPGV-AAYIPVAHDYLDAP---------DQISRERALELLKPLL 365

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           E+E  LK+G N+KYD+ +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL + 
Sbjct: 366 EDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHK 425

Query: 517 ---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERL 572
               +EI    K+ +  ++I+  +   +A E+++V LQL L + P L   K  L+V+E +
Sbjct: 426 TITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENI 485

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P++ V+S++E  G++ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  I
Sbjct: 486 EMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTI 545

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF K       KT  G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  I
Sbjct: 546 LFEKQGIKPLKKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMI 604

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N +T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQ
Sbjct: 605 NPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 664

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+
Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGM 724

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I
Sbjct: 725 SAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDI 784

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S   + R   ERAAINAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV
Sbjct: 785 KSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEV 844

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ++++   ++ I   ME        L VPL V +    NW + +
Sbjct: 845 HKDDVDAVAKQIHQLMENCT----RLDVPLLVEVGSGENWDQAH 884


>gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1]
 gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1]
          Length = 915

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/989 (34%), Positives = 527/989 (53%), Gaps = 90/989 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I 
Sbjct: 57  VVFDAKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +   G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++  
Sbjct: 117 TLARSSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIK------QKKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G    ++  N  ++        K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPTLAIRGAKTLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + + A LS +L  ++ DVP+ + +E L+  + +   L++    +EF   +          
Sbjct: 237 HRDAAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWV---------- 286

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                  E+ RD            +  +K+              
Sbjct: 287 ----------------------AEVQRDAAKAGDDVGPAVEPAAKVE------------- 311

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  I++      W++KL      +F   T  +DA  ++ + ++ +   
Sbjct: 312 ----------PKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGLSFAVEP 361

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ L+     +        + +L  LK   E+    K+G N KYD  +
Sbjct: 362 HE--------AAYVPLAHDY--EGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDINI 411

Query: 476 LHRYG---ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           L   G   I MRG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I       +
Sbjct: 412 LAN-GSPPIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQL 470

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             ++I+  +   +A E++++ L+L   L+ +L     +  V   ++ P++ V++++E  G
Sbjct: 471 TFNQITLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQG 530

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D +LLK  S E+   +  LE   Y+L+GE FNL SPKQLG IL+ KL  P  +KT  
Sbjct: 531 ALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTAK 590

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 591 GQPSTAEAVLDELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 650

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   L
Sbjct: 651 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R +
Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 770

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER A
Sbjct: 771 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAM+ V   L +  L  +++LQ+HDELV EV E+ +      I   
Sbjct: 831 INAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQH 890

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M +A      L VPL V   V  NW E +
Sbjct: 891 MSQAA----QLDVPLLVEAGVGANWDEAH 915


>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 933

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/977 (36%), Positives = 538/977 (55%), Gaps = 52/977 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
             A  +G +VTI + DKD  QLV P   L +T+   ++D  E VI K+G+ P+++V L A
Sbjct: 117 LQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDEAVIAKFGVRPDQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGDNLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++TDV +      L L + N   L        FT+ +  +  T        EPV L
Sbjct: 236 ELVTIKTDVTLASGPRALDLREPNTETLAVLYARYGFTQALREMGGTSAQAGLLSEPVAL 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  +    E    R T   +   ++  D    +++                     
Sbjct: 296 GAAAATART---EPGRARGTGFVSGPVNAAVDLDPALSA--------------------- 331

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++    K       
Sbjct: 332 PGEYETILTQEQLDSWIVQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGK------- 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++    +             + L+ L     +    K+G + KYD  V+ R+G+ + 
Sbjct: 385 -AAYLPFGHNFP--GAPVQLDRTQALAQLVPLLTDPAVRKLGQHGKYDLHVMRRHGVELA 441

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+  D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS      
Sbjct: 442 GYAHDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATR 501

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L PKL  E  L  VY  ++ P++DV++++E  G+ +D   L++ S
Sbjct: 502 YAAEDADITLRLHHVLGPKLAAEPGLERVYREIEMPLVDVLARIEANGVCVDAAELRRQS 561

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 562 ADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEALE 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +PN
Sbjct: 621 AIADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN 680

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+HR
Sbjct: 681 LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHR 740

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+SV   +  H    KM+LQ+HDELVFE   + + T    +   M  A      LR
Sbjct: 861 IKRAMVSVDGWIAGHAQRAKMILQVHDELVFEADTDFVDTLLSEVTTRMASAA----ELR 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  + +NW E +
Sbjct: 917 VPLVVDSGIGDNWDEAH 933


>gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1]
 gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1]
          Length = 915

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/989 (34%), Positives = 532/989 (53%), Gaps = 90/989 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I 
Sbjct: 57  VVFDAKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVKALGYPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A  +G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++  
Sbjct: 117 TLARSAAAKGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G    ++  N  ++        K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + + A LS +L  ++ DVP+ + ++ L+  + +   L +    +EF   +          
Sbjct: 237 HRDAAFLSYELATIKVDVPLDVEVDALVCGEPDREALQALYTEMEFKSWV---------- 286

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                  E+ R+     ++ + + +  +K+              
Sbjct: 287 ----------------------AEVQREAARAGNEVAPVEEPAAKVE------------- 311

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  I++    + W+ KL      +F   T  +DA  ++ + ++ +   
Sbjct: 312 ----------PTYETILDQARFEAWLDKLRQAPLFAFDTETTGLDAQKAQLVGLSFAVAP 361

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ L+     +          +L  LK   E+    K+G N KYD  +
Sbjct: 362 HE--------AAYVPLAHDY--EGAPAQLDRDAVLLALKPLLEDPAKAKVGQNAKYDINI 411

Query: 476 LHRYG---ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           L   G   I MRG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I       +
Sbjct: 412 LAN-GSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQL 470

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             ++I+  +   +A E++++ L+L   L+ +L     +  V   ++ P++ V++++E  G
Sbjct: 471 TFNQINLDKAGPYAAEDADITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQG 530

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D  LL   S E+   +  LE+  Y+L+GE+FNL SPKQLG IL+ KL  P  +KT  
Sbjct: 531 ALVDAALLHVQSGELGVKMGELEQRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTAK 590

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 591 GQPSTAEAVLDELALLGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 650

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   L
Sbjct: 651 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N LD+HR  AAE+FGV ++ V+   RR AK INF +IYG+S F LA Q+ + R +
Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALQDVTTDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQ 770

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER A
Sbjct: 771 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAM++V   L +  L  +++LQ+HDELV EV E+ +      I   
Sbjct: 831 INAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQH 890

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M +A      L VPL V   +  NW E +
Sbjct: 891 MSQAA----QLDVPLLVEAGIGANWDEAH 915


>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 927

 Score =  943 bits (2437), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/990 (35%), Positives = 530/990 (53%), Gaps = 77/990 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M K   L LVDGSS++YRAF+A P L R   G P      AI G  NML  L    R++ 
Sbjct: 1   MSKPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASPATGAIRGMINMLQAL----RRDY 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A + A +FD    TFR+ +YP+YKA+R  +P+ L  Q+  +    +  G P + + G E
Sbjct: 56  PADYAACVFDASGPTFRDTLYPEYKAHRAPMPDDLRAQIEPIHQVVRLMGWPVVCVPGVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T    A ++G  V + S DKDL QLV     + DT+  ++ D+  V  ++G+PP
Sbjct: 116 ADDVIGTLAACAARQGIEVIVSSGDKDLSQLVDEHITIIDTMSGKRRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             MV  Q L GD++DN+PG+P +G KTAA  L EYG+L+ +L  A  IK     EN+   
Sbjct: 176 TLMVDYQTLVGDAVDNVPGVPKVGPKTAAKWLNEYGSLDGLLARAGEIKG-VAGENLRGA 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLI------LEDCNGPRLISFLKALEFTKLINRVAT 290
            E     R+LV +RTD  +   ++ L       +   +   L  F +A  F  L   +  
Sbjct: 235 LEWLPKGRELVTIRTDCDLAGHVDGLPDLAGVAMGASDNAALRDFYQAYGFKGLARALQD 294

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
               +A    P                             F+S             P+  
Sbjct: 295 DLPANATATLP-----------------------GASGDLFAS-------------PETT 318

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
           F+    +  +      +Y  ++  +D  +W+++++     +    T ++D   ++ + ++
Sbjct: 319 FVAEAAQGREV-----AYDTVLTWEDFDRWLERIQGAELVALDTETTSLDELRAEIVGLS 373

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S               +I L+ H+  D+  +      +L  LK + E+    K+G ++K
Sbjct: 374 FSVEPGA--------AAYIPLA-HSGPDAP-EQLPLDAVLERLKPWLEDGSRAKLGQHVK 423

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKS 526
           YD+ V   + I +RG+  D ML SYVL+  +  H++AS+A++       + +++      
Sbjct: 424 YDRHVFANHDIGVRGYVHDTMLQSYVLEVHK-PHNLASLAERHTGRTGISYEDLCGKGAK 482

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            IP  ++   Q   ++ E+S+  L +  +L P +  ++ L     L+    +V+ ++E  
Sbjct: 483 QIPFAQVPVEQAAAYSCEDSDQTLDVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERN 542

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID   L+Q S ++ + +L LE+  YD++G+ FNL SPKQLG+I F KL  P   KT 
Sbjct: 543 GVLIDPATLQQQSHDLGQRILKLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGLPVVKKTA 602

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   T  + LE++   D P+   ILE R LSK+K TY D L    + RT RVHT Y+ A
Sbjct: 603 TGARSTDEEVLEKL-AEDYPLPAKILEHRSLSKLKGTYTDKLSQLADPRTGRVHTHYAQA 661

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRL+S EPNLQNIPI+T  G+++R AF++PP + + SADYSQIELRI+AH++    
Sbjct: 662 VAVTGRLSSNEPNLQNIPIRTSEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGDDA 721

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F   LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+S F LA  L I   
Sbjct: 722 LLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIDNK 781

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            AA YI RYF R+PG+ +Y+++TK   +  GYVET+FGRR++  EINSP    R   ERA
Sbjct: 782 AAAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGRRLYLPEINSPNGPRRGAAERA 841

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AAD+ ++AM++V   L+  K    M++Q+HDELVFE+PEEE       I  
Sbjct: 842 AINAPMQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVHDELVFELPEEEAGWLRTEIPR 901

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M         L+VPL   +    NW++ +
Sbjct: 902 LMAGVA----ELKVPLLAEVGTGPNWEKAH 927


>gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1]
          Length = 922

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/985 (35%), Positives = 524/985 (53%), Gaps = 80/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   NNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA+RP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++   
Sbjct: 121 IARRASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I++ A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVSELAFRGSKTMAAKIIDNA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  RLS +L  ++TDV +      L  +  +   LI     +EF + +  +         
Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWLAEILDNKAPATI 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 ++        +A+ET+                                      
Sbjct: 301 ATATTTVETEADTTPSLALETQ-------------------------------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+    + +W+ KL+     +    T ++D   ++ + ++ +    K
Sbjct: 323 ----------YDTILTEAQLDEWIAKLKQASLFAVDTETTSLDYMVAELVGMSFAVEAGK 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+         +    +  L  L+   E+    K+G N+KYD  VL 
Sbjct: 373 --------AAYLPLAHDYV--GAPQQLDKQFALEKLRPILEDAKLKKVGQNLKYDISVLA 422

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI+++G   D ML SYV +S  S HD+  +A K+L +     ++I       +  ++I
Sbjct: 423 NAGITLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFNQI 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           S      +A E++++ L+L   L P+L  E +L  V+  ++ P+I ++S +E  G+ ID 
Sbjct: 483 SLETAAPYAAEDADITLRLHQHLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFIDS 542

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ +  LE   YD++GEKFNLSSPKQL  + F KL +P   KT  G    
Sbjct: 543 MLLGQQSEELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPS- 601

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 602 TAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T  G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L   F 
Sbjct: 662 LSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNAFA 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI
Sbjct: 722 EGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 782 DTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPM 841

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMIS+   ++ D +    M++Q+HDELVFEV  ++  T  Q +   M KA
Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                NL V L     + +NW E +
Sbjct: 902 A----NLDVELLAEAGIGDNWDEAH 922


>gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 913

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/988 (35%), Positives = 533/988 (53%), Gaps = 90/988 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTT-STGKPTGAVKGVLNMLLSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 57  VVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +   G  V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++  
Sbjct: 117 TLARSSAAAGRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G   E +  +  ++ +      K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L   +     LI+  + LE               
Sbjct: 237 NREQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELE--------------- 281

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                          K      L +      + +    +  E  
Sbjct: 282 ------------------------------FKNWLDDLLREAKEAGENGEAETPIQAE-- 309

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +++      W++KLE     +F   T ++DA  ++ + ++ +  +
Sbjct: 310 ----------VDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQVVGVSFAVKE 359

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 360 G-EAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L +     ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL     L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L++  L  +++LQ+HDELV EV E+ +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVREGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A      L VPL V   V +NW E +
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDEAH 913


>gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619]
 gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619]
          Length = 915

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/989 (34%), Positives = 534/989 (53%), Gaps = 90/989 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I 
Sbjct: 57  VVFDAKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVKALGYPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +  +G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++  
Sbjct: 117 TLARSSAAKGRPVIISTGDKDMAQLVDGHVTLVNTMTGSVLDVAGVHEKFGVGPEHIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G    ++  N  ++        K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + + A LS +L  ++ DVP+ I ++ L+  + +   L++    +EF   I          
Sbjct: 237 HRDAAFLSYELATIKVDVPLDIEVDALVCGEPDREALLALYTEMEFKSWI---------- 286

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                  ++ RD      + + L    +K+              
Sbjct: 287 ----------------------ADVQRDAARAGDEVAPLEAPAAKVE------------- 311

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  I++      W++KL      +F   T ++DA  ++ + ++ +   
Sbjct: 312 ----------PKYETILDQARFDAWLEKLRQAPLFAFDTETTSLDAQKAQLVGLSFAVEP 361

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ L+     +        + +L  LK   ++    K+G N KYD  +
Sbjct: 362 HE--------AAYVPLAHDY--EGAPVQLDREAVLLALKPLLQDPAKEKVGQNAKYDINI 411

Query: 476 LHRYG---ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           L   G   I M+G   D ML SYVL+S  + HD+ S+AQK+L +     ++I       +
Sbjct: 412 LAN-GSPAIQMQGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHATIAFEDIAGKGAKQL 470

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             ++I   +   +A E++++ L+L   L+ +L     +L V   ++ P++ V++++E  G
Sbjct: 471 TFNQIHLDKAGPYAAEDADITLRLHQALQARLAQTPSVLPVLMDIEMPLVPVLAKIERQG 530

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D  LL+  S E+   +  LE   Y+L+GE+FNL SPKQLG IL+ KL  P  +KT  
Sbjct: 531 ALVDAALLQIQSGELGVKMADLERRAYELAGEEFNLGSPKQLGSILYDKLGMPVLSKTAK 590

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 591 GQPSTAEAVLDELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 650

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   L
Sbjct: 651 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N+LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R +
Sbjct: 711 LHAFRNNLDVHRATAAEVFGVALEAVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 770

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER A
Sbjct: 771 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAM++V   L +  L  +++LQ+HDELV EV E+ +      I   
Sbjct: 831 INAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVDQVKDEIRGQ 890

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M KA      L VPL V + V +NW E +
Sbjct: 891 MSKAA----QLDVPLLVEVGVGSNWDEAH 915


>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 933

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/977 (36%), Positives = 535/977 (54%), Gaps = 52/977 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+ +Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
             A  +G +VTI + DKD  QLV P   L +T+   ++D    VI K+G+ P+++V L A
Sbjct: 117 LQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGDNLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++ DV +      L L + N   L        FT+ +  +           EPV L
Sbjct: 236 ELVTIKIDVTLASGPRALDLREPNTETLAVLYARYGFTQALRELGGALAQSGLLSEPVAL 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  +    E    R T   +   ++  D    +++                     
Sbjct: 296 GAAAATART---EPGRARGTGFVSGPVNAAVDLDPALSA--------------------- 331

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++    K       
Sbjct: 332 PGAYETILTQEQLDSWIAQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGK------- 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++    +               L+ L     +    K+G + KYD  V+ R+G+ + 
Sbjct: 385 -AAYLPFGHNFP--GAPVQLDRTHALAQLAPLLTDPAVRKVGQHGKYDLHVMRRHGVELA 441

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS      
Sbjct: 442 GYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATR 501

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L PKL  E  L  VY  ++ P++DV++++E  G+ +D   L++ S
Sbjct: 502 YAAEDADITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQS 561

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T +D  +
Sbjct: 562 ADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEDALE 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R LSK++STY D LP  I+ ++ RVHT Y  A   TGRL+S +PN
Sbjct: 621 AIADQHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN 680

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   F +  D+HR
Sbjct: 681 LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHR 740

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+ V   + DH    KM+LQ+HDELVFE   + + T    +   M  A      LR
Sbjct: 861 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMASAA----ELR 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V ++W + +
Sbjct: 917 VPLVVDSGVGDDWDQAH 933


>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
 gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
          Length = 904

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/980 (34%), Positives = 533/980 (54%), Gaps = 83/980 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q ++ L LVDGSS++YRAF+A P L+   +G P  A+ G  NML KLL     E   + F
Sbjct: 3   QPDDRLVLVDGSSYLYRAFHALPALTNA-NGEPTGALYGVVNMLHKLLA----EEPEARF 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD P  TFR+E++  YKA+RP +P+ L  Q   ++    A G+P +E+ G EADD+I
Sbjct: 58  AVVFDAPGKTFRDELFEQYKAHRPPMPDELRAQREPLKAIIAALGVPVLEVPGVEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A      V I +TDKD+ QLV     L +T+   ++D E V +K+G+PPE +  
Sbjct: 118 GTLAARAS---GPVLISTTDKDMAQLVDEQVTLLNTMSGTRLDPEGVREKFGVPPELIRD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ DNIPG+P +G KTAA  L  YG+L+ +   A  I+  K  E++  + +   
Sbjct: 175 YLALVGDTSDNIPGVPKVGPKTAAKWLNAYGSLDALREQADEIRG-KVGESLRAHLDELP 233

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  LV +R D+ + +  E L+ +  +   L    +     +                  
Sbjct: 234 LSVDLVTIRCDLALEVAPEDLVRQSPDRETLGGLYQRYGMRR------------------ 275

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                          E +            +SL     ++                    
Sbjct: 276 ------------FLAELQAGDAAAAADGTGASLPPNAPEV-------------------- 303

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                +Y  +++   +  W+++L    + S  + T++++   ++ + ++++    +    
Sbjct: 304 -----AYEVVLDDHGLAAWMERLRNADAFSIDLETNSLNYMDAEIVGVSLAVEPGQ-AAY 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V            +D          +L  L+   E E   K+G N+KYD  VL RYGI
Sbjct: 358 LPVAHCGPGAPDQLDRD---------RVLDALRPLLEAEQPEKMGQNLKYDMSVLARYGI 408

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
            +RG   D ML SYVLDS  + HD+ S+A K+L       +++       +P  +I   +
Sbjct: 409 ELRGVAYDSMLESYVLDSTATRHDMDSLASKYLGVEVTSYEQLCGKGVRQVPFAEIDVER 468

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E++++ L+L  LL P+L  E  LL V+ +L+ P++ V+S+ME  G+++D DLL+
Sbjct: 469 AGHYAAEDADIALRLHQLLYPRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLE 528

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + S E++  +  +E+  ++ +GE FNL SPKQ+ +I F ++  P   +T  GQ  T    
Sbjct: 529 RQSEELAGRMAEVEQRAHEEAGEAFNLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESV 588

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE+++   + + + ILE R LSK+KSTY D LP  I++ T RVHT Y  A   TGRL+S 
Sbjct: 589 LEELSARGHELPRLILEHRGLSKLKSTYTDKLPQLIHRDTGRVHTSYHQAVAATGRLSSS 648

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T  G++IR+AF++ P  +LI+ADYSQ+ELRI+AH++    L + FE   D
Sbjct: 649 DPNLQNIPVRTPEGRRIRKAFVASPGHRLITADYSQVELRIMAHLSGDEGLRRAFEQGED 708

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+F    ++V+ + RR AK INF +IYG+S + L  QL IPR EA  YI RYF
Sbjct: 709 IHRATAAEVF--AADEVNDEQRRAAKAINFGLIYGMSAWGLGRQLGIPRDEAQTYIDRYF 766

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  ++++ +   R+ GYVET+FGRR+H  EI+S     R   ER AINAP+QG+A
Sbjct: 767 ERYPGVRAFMDRAREQAREQGYVETVFGRRLHVPEIHSRNRQRREYAERTAINAPMQGTA 826

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ +RAMI V   L +    +++++Q+HDELV EVPE + T     +   ME +    +
Sbjct: 827 ADVIKRAMIDVDALLNERFPESRLVMQVHDELVLEVPEAQATAVGDEVRRLMEGSDRGMV 886

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
              VPL+V + V ++W++ +
Sbjct: 887 --SVPLEVELGVGDDWEQAH 904


>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
 gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
          Length = 894

 Score =  941 bits (2433), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/981 (36%), Positives = 536/981 (54%), Gaps = 92/981 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M   + L LVDGSS+ +RAF+A P L+    G P  AI G  NM+ +L+++ + E     
Sbjct: 1   MTS-SPLILVDGSSYFFRAFHALPPLTNSK-GQPTGAIYGVVNMIKRLIKDYQPEE---- 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR+E YP+YKA+RP +P+ L  Q   +    +A GIP + I+G EADD+
Sbjct: 55  LAVVFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFTPLIELLEAMGIPILIIEGVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A ++G +V I + DKD+ QLV+    L +T+    +DIE V +K+GI P +++
Sbjct: 115 IGTLATQATEQGVSVVISTGDKDMAQLVNEHISLINTMNNSAMDIEGVKEKFGIMPSQVI 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS+DN+PG+   G KTA   L EY +L+N++ NA++I   K  + + E     
Sbjct: 175 DYLTLIGDSVDNVPGVTKCGPKTAIKWLTEYQSLDNLIRNANQI-GGKIGDYLRESIPQL 233

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS+KLV ++TDV + +    L  +  N  RLI+                          
Sbjct: 234 PLSKKLVTIKTDVSLPLRWGELQPKTMNKERLIA-------------------------- 267

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                              + RD   K      LS++ S  N+E+               
Sbjct: 268 -------------------LIRDLEFKNWLKELLSEEESYDNNEKQ-------------- 294

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 S+  I   + +  W+ +LE   +      T ++D   ++ + I+++  + K   
Sbjct: 295 ---VPVSFELITTNQQLSHWLNQLEKCEAFCIDTETTSLDVMMAEIVGISLAIEEGK--- 348

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I L+     D      L +E+L+ L    EN    KIG N+KYD  VL  +G
Sbjct: 349 -----AAYIPLTH----DDGSPQLLREEVLTALNPILENPTIKKIGQNLKYDYSVLRNHG 399

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I+++G   D ML SYVL+SG   HD+ S+A K+L +     +EI       +  D+I   
Sbjct: 400 ITLKGIYYDTMLESYVLNSGSGRHDMDSLALKYLGHKTISYEEIAGKGAKQLRFDQIPVE 459

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E++++ LQL   L P LI E + HV+  ++ P++ V++ ME  G+ ID   LK
Sbjct: 460 KAGAYAAEDADITLQLHHKLYP-LIPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLK 518

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q    + + + +LEE    L+G+ FNL+SPKQL +ILF   K P  AKT TGQ   TA+ 
Sbjct: 519 QHGERLKERIRTLEEEALHLAGKPFNLNSPKQLQEILFDSHKLPIIAKTPTGQPS-TAEA 577

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + Q    D  +   ILE+R L+K+ STY D+LP  IN +T RVHT Y+ A T TGRL+S 
Sbjct: 578 VLQELAYDYRLAAVILEYRSLTKLVSTYIDALPKKINPKTNRVHTSYNQAVTATGRLSSS 637

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI+++ G+ IR AFI+P    +++ADYSQIELRI+AH+++   L + F N  D
Sbjct: 638 EPNLQNIPIRSEEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDENLLKAFANGWD 697

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H   A+EIF + +E+++ + RR AK INF +IYG+S F LA Q+ + R +A  YI  YF
Sbjct: 698 VHAATASEIFQIPLEEINNEQRRRAKAINFGLIYGMSSFGLAKQIGVERQDAQYYIDTYF 757

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P + EY+ +T+      GYVET+FGRR++  EIN+     +   ER AINAP+QG+A
Sbjct: 758 QRYPKVLEYMNRTRQQAHHQGYVETLFGRRLYLPEINARNLMRQKAAERTAINAPMQGTA 817

Query: 897 ADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           ADI + AMI + K    H K   +M++Q+HDELVFEV +  I ++ ++I   ME      
Sbjct: 818 ADIIKNAMICIAKWQNSHEKPPARMIMQVHDELVFEVNKNAIESSKEMIRELMEH----T 873

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           + L VPL V+I    NW   +
Sbjct: 874 VTLSVPLVVSIGTGANWDAAH 894


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score =  941 bits (2433), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/985 (35%), Positives = 522/985 (52%), Gaps = 80/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   NNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA+RP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++        K     I++ A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      L  +  +   LI     +EF + +  V         
Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELEAKPADRDELIKCYGEMEFKRWLAEVLDNKAPTKV 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +    +        + IET+                                      
Sbjct: 301 AAKVETTETQEESTPSVTIETQ-------------------------------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+    + +W+ KL+     +    T ++D   ++ + ++ +    K
Sbjct: 323 ----------YDTILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGLSFAVEAGK 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+         +    +  L  L+   E+    K+G N+KYD  VL 
Sbjct: 373 --------AAYLPLAHDYV--GAPQQLDKQTALEKLRPILEDAKLKKVGQNLKYDISVLA 422

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I       +  ++I
Sbjct: 423 NAGIQLKGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFNQI 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  V+  ++ P+I ++S +E  G+ ID 
Sbjct: 483 PLETAAPYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDS 542

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ +  LE   YD++GEKFNLSSPKQL  + F KL +P   KT  G    
Sbjct: 543 MLLGQQSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPS- 601

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 602 TAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 662 LSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFA 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI
Sbjct: 722 EGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 782 DTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPM 841

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMIS+   ++ D +    M++Q+HDELVFEV  ++  T    +   M KA
Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEITMIMQVHDELVFEVDADKAETLKLKVCELMAKA 901

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                NL V L     + +NW + +
Sbjct: 902 A----NLDVELLAEAGIGDNWDQAH 922


>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 916

 Score =  941 bits (2433), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/983 (35%), Positives = 536/983 (54%), Gaps = 91/983 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + LVDGSS+++RAF+A P L+    G P  A+ G  NM+  L    +K    S   V+
Sbjct: 14  HKVILVDGSSYLFRAFHALPPLTNSK-GNPTGAVKGVINMIRSL----KKGYPDSKIIVV 68

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN+IYP+YKA+RP +P+ L  Q+  +    +A G+P + I   EADD+I T 
Sbjct: 69  FDAKGKTFRNDIYPEYKAHRPPMPDDLRVQIQPIHDIIKAMGLPLLVIDNVEADDVIGTL 128

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            + A  +G    + + DKD+ QLVS    L +T+  E++D++ V  K+G+PPE +V   A
Sbjct: 129 AHEATDQGIETLVSTGDKDMAQLVSEHVQLINTMNNEQLDVDGVQAKFGVPPEHIVDYLA 188

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GD +DNIPG+P +G KTA  L+   G+LE++      +        K  +  + E+ E
Sbjct: 189 LMGDKVDNIPGVPKVGEKTAKALIAGLGSLEDVYSRLDDVATLDFRGAKSMKAKLEEHKE 248

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS++L  ++TDV +   L  + +++ +                  ++   Y      
Sbjct: 249 QAFLSKELATIKTDVELEWGLGDIKIDEPDN----------------KKLLELY------ 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       +  +F +   + S    E+  Q+         
Sbjct: 287 ----------------------------QECEFKTWIKELSTGEVEEPKQQ--------- 309

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            Q P++   YT +   + +Q+W+ KL+     +    T ++    ++ + I+++    + 
Sbjct: 310 -QLPVDRSLYTNLSTEEALQEWLDKLDKAELYAIDTETTSLKYMEAEIVGISLAVAPNE- 367

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I L+   +     +      +L  +K   E+E   K+G N+KYD  VL  
Sbjct: 368 -------ACYIPLAHDYA--GAPEQLDRDWVLQKMKPLLEDETPKKVGQNLKYDAHVLKN 418

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           Y I + G   D ML SYVL+S  S H++  +A+ +L +     + I       +  ++I 
Sbjct: 419 YDIELNGIAHDTMLESYVLNSTASKHNMDDLAKHYLGHECIDFESIAGKGAKQLTFNQIP 478

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E++++ L+L  +L P+L  ++ LL +Y++++ P++ V++ ME  G  ++ D
Sbjct: 479 VEQAGEYAAEDADITLRLHQVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGASVNAD 538

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L Q S+EI + L  LE   +D++GE FNL S KQL  I F KL+ P   KT  GQ   T
Sbjct: 539 KLHQQSSEIEQRLQELERKAHDIAGEVFNLGSTKQLQAIFFEKLELPVIKKTPKGQPS-T 597

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+++      D  + K ILE R L+K+K+TY D LP  IN ++QRVHT Y  A T TGRL
Sbjct: 598 AEEVLVELSHDYELPKVILEHRGLAKLKNTYTDKLPLMINSKSQRVHTSYHQAVTATGRL 657

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+ + G+KIR+AF +P    L++ADYSQIELRI+AH++    L   F+N
Sbjct: 658 SSSDPNLQNIPIRNEEGRKIRQAFEAPEGYTLVAADYSQIELRIMAHLSGDKGLLDAFKN 717

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEI  V+   V  + RR AK +NF +IYG+S F LA QL I RSEA +YI 
Sbjct: 718 GKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMSAFGLARQLGIGRSEAQEYID 777

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF R+PG+ +Y+E T+    + GYVET+FGRR++  EINS     R   ER AINAP+Q
Sbjct: 778 KYFDRYPGVKKYMESTRELAAKQGYVETLFGRRLYLPEINSRNGMRRQAAERTAINAPMQ 837

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI +H+ +++      M++Q+HDEL+FEVP+ ++   S  I   ME A  
Sbjct: 838 GTAADIIKRAMIKMHQWIQESAHDVHMIMQVHDELIFEVPDGQLDAVSAEIKSIMEAAA- 896

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
              +L VPL V++   +NWQ+ +
Sbjct: 897 ---DLDVPLLVDVGHGDNWQQAH 916


>gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1]
          Length = 915

 Score =  941 bits (2433), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/989 (34%), Positives = 528/989 (53%), Gaps = 90/989 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I 
Sbjct: 57  VVFDAKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +   G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++  
Sbjct: 117 TLARSSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIK------QKKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G    ++  N  ++        K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPTLAIRGAKTLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + + A LS +L  ++ DVP+ + +E L+  + +   L++    +EF   +          
Sbjct: 237 HRDAAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWV---------- 286

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                  E+ RD        +   +  +K+              
Sbjct: 287 ----------------------AEVQRDAAKAGDDVAPAVEPAAKVE------------- 311

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  I++      W++KL      +F   T  +DA  ++ + ++ +   
Sbjct: 312 ----------PKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGLSFAVEP 361

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ L+     +        + +L  LK   E+    K+G N KYD  +
Sbjct: 362 HE--------AAYVPLAHDY--EGAPAQLDREAVLLALKPLLEDPAKAKVGQNAKYDINI 411

Query: 476 LHRYG---ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           L   G   I MRG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I       +
Sbjct: 412 LAN-GSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQL 470

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             ++I+  +   +A E++++ L+L   L+ +L     +  V   ++ P++ V++++E  G
Sbjct: 471 TFNQINLDKAGPYAAEDADITLRLHDALQARLAQTPSVQPVLMDIEMPLVPVLARIERQG 530

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D +LLK  S E+   +  LE   Y+L+GE FNL SPKQLG IL+ KL  P  +KT  
Sbjct: 531 ALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTAK 590

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 591 GQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 650

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   L
Sbjct: 651 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R +
Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 770

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER A
Sbjct: 771 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAM+ V   L +  L  +++LQ+HDELV EV E+ +      I   
Sbjct: 831 INAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQH 890

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M +A      L VPL V   V  NW E +
Sbjct: 891 MSQAA----QLDVPLLVEAGVGANWDEAH 915


>gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
 gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
          Length = 913

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/988 (35%), Positives = 533/988 (53%), Gaps = 90/988 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTT-STGKPTGAVKGVLNMLLSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 57  VVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++  
Sbjct: 117 TLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G   E +  +  ++ +      K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L  ++     LI+  + LE               
Sbjct: 237 NREQAFLSYQLATIKTDVELDVEIDKLYPDEPQREALIALYRELE--------------- 281

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                          K      L +      + +    +  E  
Sbjct: 282 ------------------------------FKNWLDDLLREAKEAGENGEAETPIQAE-- 309

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +++      W++KLE     +F   T ++DA  ++ + ++ +  +
Sbjct: 310 ----------VDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQVVGVSFAVKE 359

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 360 G-EAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L +     ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL     L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L++  L  +++LQ+HDELV EV EE +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVEQVCEGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A      L VPL V   V +NW E +
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDEAH 913


>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
 gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
          Length = 909

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/987 (35%), Positives = 533/987 (54%), Gaps = 89/987 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A P L+    G    A+ G  NM+ +L    +K+   S 
Sbjct: 1   MSDKQPLILVDGSSYLYRAYHALPPLTNSK-GAATGAVKGVINMIRRL----QKDYPEST 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR++IYP+YKANRP +P+ L  Q+  +    +  G+P +   G EADD+
Sbjct: 56  IAVVFDAKGKTFRDDIYPEYKANRPPMPDDLREQIEPIHSIVRGMGLPLLCEPGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A + G +V + + DKD+ QLV+    L +T+ +  +D + V+ K+GIPPE ++
Sbjct: 116 IGTLAKEASEAGCSVIVSTGDKDMAQLVNDRVTLVNTMNDTLMDPQGVVDKFGIPPELII 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENIL 234
            L AL GD +DNIPG+PG+G KTA  LLQ  G L+ I  +   +        K     + 
Sbjct: 176 DLLALMGDKVDNIPGVPGVGEKTALGLLQGLGGLDQIYASLDEVQNLSFRGAKTMAAKLE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           +  + A LS +L  + TD+ + +    L     +   L++      F +L  +       
Sbjct: 236 KERDNAYLSYELATIATDLKLPLVYADLANGVPDKAALLAL-----FRELEFK------- 283

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                             S    L ++ S  +S+ T +    E+
Sbjct: 284 ----------------------------------SWIDELENEASGDSSDATVEADTREQ 309

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                       +Y  +++      W+ +L      +F   T +++   +  + ++ +  
Sbjct: 310 ------------NYVTVLDQATFDDWLSRLSEAPLFAFDTETTSLNYMEADIVGLSFAV- 356

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           ++ +     +   +        +D+         IL+ LK   E+    K+G N+KYD  
Sbjct: 357 ERGEAAYVPLAHSYPGAPAQLDRDA---------ILAALKPLLEDPAKPKLGQNLKYDAS 407

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPI 530
           VL RY I M+G   D ML SYVLDS  + HD+ S+A K+L       +++       I  
Sbjct: 408 VLARYDIHMQGIAFDTMLESYVLDSTGTRHDMDSLALKYLGRSTTHFEDVAGKGAKQITF 467

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQ 589
           D++   Q   +A E++ V L L   L PKL     L  V+  ++ P++ V+S+ME TG  
Sbjct: 468 DQVGIEQAGPYAAEDAEVTLALHETLWPKLQESAGLASVFSDIELPLVPVLSRMERTGAL 527

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D++ L + S E+   L +LEE  ++L+G+ FNL SPKQLG ILF KL+ P   KT  G 
Sbjct: 528 LDEERLWEQSRELGGRLQALEEEAHNLAGQVFNLGSPKQLGQILFEKLELPVIKKTPKGA 587

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
              TA+++ Q    D P+ K ++E R LSK+KSTY D LP  IN RT R+HT Y  A T 
Sbjct: 588 PS-TAEEVLQELALDYPLPKLLIEHRGLSKLKSTYTDKLPGMINPRTGRIHTSYHQAVTA 646

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+T+ G++IR+AFI+    ++++ADYSQIELRI+AH++K   L +
Sbjct: 647 TGRLSSSDPNLQNIPIRTEEGRRIRQAFIAAEGYQVVAADYSQIELRIMAHLSKDAGLLE 706

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F  +LD+H   AAE+FGV+++ VS + RR AK INF +IYG+S F LA QLR+ R EA 
Sbjct: 707 AFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINFGLIYGMSAFGLARQLRLDRGEAQ 766

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI  YF R+PG+ EY++ T+    + GYVET+FGRR++  EIN    + +   ER AIN
Sbjct: 767 RYIDVYFERYPGVREYMDNTRALAHEQGYVETLFGRRLYLPEINVRNKNRQQAAERTAIN 826

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI +RAMI+V + + D  +  KM++Q+HDELV EV E+++      +   M 
Sbjct: 827 APMQGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDELVLEVAEDQLDPVCDELCKQMS 886

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      L VPL V +    NW E +
Sbjct: 887 AAA----ELAVPLLVEVGRGANWDEAH 909


>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
 gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
          Length = 921

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/985 (35%), Positives = 521/985 (52%), Gaps = 81/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++ L 
Sbjct: 121 IARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I+E A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      L ++  +   LI     +EF + +  V         
Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEVLDNKI---- 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                        +  TP     E  + 
Sbjct: 297 ---------------------------------------------TANTPIDAASETQED 311

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +        Y  I+   ++  W+ KL+     +    T ++D   ++ + I+ +    K
Sbjct: 312 STPVEAIATQYDCILTEAELDAWIAKLKQADLMAVDTETTSLDYMVAELVGISFAVEAGK 371

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++                    L  L+   E+    K+G N+KYD  +L 
Sbjct: 372 -AAYLPLTHDYVGAPT---------QIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILA 421

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     +EI       +  ++I
Sbjct: 422 NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQI 481

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  ++  ++ P+I V+S +E  G+ ID 
Sbjct: 482 PLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDS 541

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ + +LEE  YD++GEKFNL SPKQL  + F KL +P   KT  G    
Sbjct: 542 MLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPS- 600

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 601 TAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 660

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 661 LSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFA 720

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR EA  YI
Sbjct: 721 EGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYI 780

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 781 DTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPM 840

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++     + I   M +A
Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L V L     + NNW E +
Sbjct: 901 A----DLDVELLAEAGIGNNWDEAH 921


>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
 gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
          Length = 921

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/985 (35%), Positives = 523/985 (53%), Gaps = 81/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++ L 
Sbjct: 121 IARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I+E A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      L ++  +   LI     +EF + +  V         
Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEVLDNKI---- 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                        +  TP     E  + 
Sbjct: 297 ---------------------------------------------TANTPIDAASETQED 311

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +        Y  I+   ++  W+ KL+     +    T ++D   ++ + I+ +    K
Sbjct: 312 STPVEAIATQYDCILTEAELDAWIAKLKEADLMAVDTETTSLDYMVAELVGISFAVEAGK 371

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++      ++            L  L+   E+    K+G N+KYD  +L 
Sbjct: 372 -AAYLPLTHDYVGAPTQINKTV---------ALEKLRPLLEDPKLKKVGQNLKYDISILA 421

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     +EI       +  ++I
Sbjct: 422 NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQI 481

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  ++  ++ P+I V+S +E  G+ ID 
Sbjct: 482 PLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDS 541

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ + +LEE  YD++GEKFNL SPKQL  + F KL +P   KT  G    
Sbjct: 542 MLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPS- 600

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 601 TAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 660

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 661 LSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFA 720

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR EA  YI
Sbjct: 721 EGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYI 780

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 781 DTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPM 840

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++     + I   M +A
Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L V L     + NNW E +
Sbjct: 901 A----DLDVELLAEAGIGNNWDEAH 921


>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 933

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/977 (35%), Positives = 537/977 (54%), Gaps = 52/977 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y DYKANRP +PE L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYADYKANRPPMPEDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +G  VTI + DKD  QLV P   L +T+   ++D    VI K+G+ P+++V L A
Sbjct: 117 LQGAADGLQVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGDNLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++TDV +      L L + N   L        FT+ +  +           EPV L
Sbjct: 236 ELVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAQAGLLAEPVAL 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  +    E    R T   +   ++  D    +++                     
Sbjct: 296 GAAAATART---EPGRARGTGFVSGPVNAAVDLDPSLSA--------------------- 331

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++            
Sbjct: 332 PGQYETILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPG-------- 383

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++    H             + L+ L     +    K+G + KYD  V+ R+G+++ 
Sbjct: 384 QAAYLPFGHHFP--GAPAQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVALA 441

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS      
Sbjct: 442 GYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATR 501

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L P+L  E  L  VY  ++ P++DV++++E  G+ +D   L++ S
Sbjct: 502 YAAEDADITLRLHRVLGPRLASEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQS 561

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 562 ADLSKRMLAAQQKATELAGRSFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEALE 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K++STY D LP  ++ ++ RVHT Y  A   TGRL+S +PN
Sbjct: 621 AIADQHELPRVILEYRGLAKLRSTYTDKLPEMVHPQSGRVHTSYHQAGAATGRLSSSDPN 680

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+HR
Sbjct: 681 LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHR 740

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM++V   + +H    KM+LQ+HDELVFE   + + T    +   M  A      LR
Sbjct: 861 IKRAMVNVDGWIANHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMAGAA----ELR 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V +NW + +
Sbjct: 917 VPLVVDSGVGDNWDQAH 933


>gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1]
          Length = 913

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/988 (35%), Positives = 532/988 (53%), Gaps = 90/988 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTT-STGKPTGAVKGVLNMLLSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 57  VVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +   G  V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++  
Sbjct: 117 TLARSSAAAGRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G   E +  +  ++ +      K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L   +     LI+  + LE               
Sbjct: 237 NREQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELE--------------- 281

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                          K      L +      + +    +  E  
Sbjct: 282 ------------------------------FKNWLDDLLREAKEAGENGEAETPIQAE-- 309

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +++      W++KLE     +F   T ++DA  ++ + ++ +  +
Sbjct: 310 ----------VDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQVVGVSFAVKE 359

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 360 G-EAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L +     ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL     L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L +  L  +++LQ+HDELV EV E+ +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLLESGLDARVILQVHDELVLEVREDLVEQVREGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A      L VPL V   V +NW E +
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDEAH 913


>gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2]
          Length = 913

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/988 (35%), Positives = 532/988 (53%), Gaps = 90/988 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTT-STGKPTGAVKGVLNMLLSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 57  VVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++  
Sbjct: 117 TLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G   E +  +  ++ +      K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L   +     LI+  + LE               
Sbjct: 237 NREQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELE--------------- 281

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                          K      L +      + +    +  E  
Sbjct: 282 ------------------------------FKNWLDDLLREAKEAGENGEAETPIQAE-- 309

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +++      W++KLE     +F   T ++DA  ++ + ++ +  +
Sbjct: 310 ----------VDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQVVGVSFAVKE 359

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 360 G-EAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L +     ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL     L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L++  L  +++LQ+HDELV EV EE +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVEQVCEGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A      L VPL V   V +NW E +
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDEAH 913


>gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1]
 gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I
 gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1]
          Length = 913

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/988 (35%), Positives = 532/988 (53%), Gaps = 90/988 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTT-STGKPTGAVKGVLNMLLSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 57  VVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++  
Sbjct: 117 TLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G   E +  +  ++ +      K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L   +     LI+  + LE               
Sbjct: 237 NREQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELE--------------- 281

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                          K      L +      + +    +  E  
Sbjct: 282 ------------------------------FKNWLDDLLREAKEAGENGEAETPIQAE-- 309

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +++      W++KLE     +F   T ++DA  ++ + ++ +  +
Sbjct: 310 ----------VDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQVVGVSFAVKE 359

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 360 G-EAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L +     ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL     L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E VS   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L++  L  +++LQ+HDELV EV E+ +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVCEGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A      L VPL V   V +NW E +
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDEAH 913


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/985 (35%), Positives = 523/985 (53%), Gaps = 80/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   NNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA+RP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++   
Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++        K     I++ A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      L  +  +   LI     +EF + +  V        A
Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELEAKPADRDELIKCYGEMEFKRWLAEVLDNKAPTTA 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +    +        + IET+                                      
Sbjct: 301 AAKVETTETQEETAPSVTIETQ-------------------------------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+    + +W+ KL+     +    T ++D   ++ + ++ +    K
Sbjct: 323 ----------YDTILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGLSFAVEAGK 372

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+         +    +  L  L+   E+    K+G N+KYD  VL 
Sbjct: 373 --------AAYLPLAHDYV--GAPQQLDKQTALEKLRPILEDAKLKKVGQNLKYDISVLA 422

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     ++I       +  ++I
Sbjct: 423 NAGIQLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFNQI 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  V+  ++ P+I ++S +E  G+ ID 
Sbjct: 483 QLETAAPYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDS 542

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ +  LE   YD++GEKFNLSSPKQL  + F KL +P   KT  G    
Sbjct: 543 MLLGQQSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPS- 601

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 602 TAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 662 LSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFA 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI
Sbjct: 722 EGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 782 DTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPM 841

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMIS+   ++ D +    M++Q+HDELVFEV  ++  T    +   M KA
Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCELMAKA 901

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                NL V L     + +NW + +
Sbjct: 902 A----NLDVELLAEAGIGDNWDQAH 922


>gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48]
 gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Pseudomonas entomophila L48]
          Length = 922

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/989 (35%), Positives = 527/989 (53%), Gaps = 87/989 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FA
Sbjct: 6   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSLFA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I 
Sbjct: 61  VVFDAKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVRALGYPLLCVEGVEADDVIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +   G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++  
Sbjct: 121 TLARSSAAAGRPVIISTGDKDMAQLVDGHVTLVNTMTGSVLDVAGVHEKFGVGPEHIIDF 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G    ++  N  ++        K     + E
Sbjct: 181 LALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYQNLDKVPALAIRGAKTLPAKLEE 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + + A LS +L  ++ DV + + ++ L+  + +   L++    +EF   +  V  +    
Sbjct: 241 HRDAAFLSYELATIKCDVELDVEVDALVCGEPDREALLALYTEMEFKSWVAEVQRS---- 296

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                                   D  + + +++ P+       
Sbjct: 297 -----------------------------------APRTGDSDAAVAAQEAPEAKV---- 317

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  I++      W++KL      +F   T  +DA  +  + ++ +   
Sbjct: 318 ---------EPKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQASIVGLSFAVEP 368

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ L+     +        + +L  LK   E+    KIG N KYD  +
Sbjct: 369 NE--------AAYVPLAHDY--EGAPAQLDREAVLLALKPLLEDPAKGKIGQNAKYDINI 418

Query: 476 LHRYG---ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           L   G   I MRG   D ML SYVLDS  + HD+ S+AQK+L +T    ++I       +
Sbjct: 419 LAN-GSPAILMRGVAYDTMLESYVLDSTATRHDMDSLAQKYLDHTTIGFEDIAGKGAKQL 477

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITG 587
             ++I   +   +A E+++V L+L   L+ +L     +L V   ++ P++ V++++E  G
Sbjct: 478 TFNQIPLEKAGPYAAEDADVTLRLHHALQARLANTPSVLPVLMDIEMPLVPVLAKIERQG 537

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D  LL   S E+   L+ LE   Y L+GE+FNL SPKQLG IL+ KL  P  +KT  
Sbjct: 538 ALVDAALLGVQSGELGAKLVELEREAYALAGEEFNLGSPKQLGAILYDKLGMPVLSKTAK 597

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L+ +     P+ K ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 598 GQPSTAEAVLDDLAEQGYPLPKVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 657

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIP++T  G++IR+AF++ P  KL++ADYSQIELRI+AH+AK   L
Sbjct: 658 AATGRLSSSDPNLQNIPVRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGL 717

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N LD+HR  AAE+FGV +  V+   RR AK INF +IYG+S F LA Q+ + R +
Sbjct: 718 LHAFRNDLDVHRATAAEVFGVALADVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 777

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER A
Sbjct: 778 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 837

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAM++V   L D KL  +++LQ+HDELV EV E+ +      I   
Sbjct: 838 INAPMQGTAADIIKRAMVAVDNWLTDSKLDARVILQVHDELVLEVREDLVEQVKDEIRGY 897

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M  A      L VPL V + V +NW E +
Sbjct: 898 MSGAA----ELDVPLLVEVGVGSNWDEAH 922


>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
 gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
          Length = 903

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/981 (36%), Positives = 536/981 (54%), Gaps = 85/981 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L L+DGSS+++RAF+A P L+    G P  AI G  NML KLL   + +    +
Sbjct: 3   MAENPVLILIDGSSYLFRAFHALPSLTTSK-GQPTGAIYGVINMLRKLLDEYQPQ----Y 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR+E++  YK +RP +PE L  Q+  +    +A G+P + ++G EADD+
Sbjct: 58  IAVVFDAKGKTFRHELFEQYKDHRPPMPEELACQIQPLHDLIRALGLPLLCVKGVEADDV 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +     I S DKDL QLV+P   L +T+   K+D   V  K+ + PE++V
Sbjct: 118 IGTLARQATAQRLETLISSGDKDLAQLVNPHVSLVNTMNLSKLDPAGVKAKFNVSPEQIV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD++DNIPGIPGIG KTAA LL +Y +L+ I+  AS IK  K  E++  +    
Sbjct: 178 DYLALVGDTVDNIPGIPGIGPKTAAKLLCQYHSLDQIMAYASEIKG-KMGESLRSHLTQL 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L+                                 K L                A   +
Sbjct: 237 PLA---------------------------------KEL----------------ATVRQ 247

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            ++LD+   + +         R+        S L +     N+               + 
Sbjct: 248 DLLLDLGPKDLRCAPPNIPALRELYAALEFKSWLRELLDNENA----------HSSISNS 297

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              +  +Y  + + +  + WV +LE     +F + T+ +D   ++ + ++ +    +   
Sbjct: 298 STNSAPAYETVFSEESFENWVARLEKAELFAFDLETNNLDYIEAEIVGLSFAIQPHE--- 354

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                 ++I L    +  +       +++L+ LK   E+    K+G N+K+D  VL  YG
Sbjct: 355 -----AMYIPLGHEDA--TAPPQLPREQVLARLKPLLEDPRHGKVGQNLKFDCNVLANYG 407

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           I ++G   D ML SYVLDS  + H++ S+A K+L     T + +       +P ++++  
Sbjct: 408 IELQGIRHDSMLESYVLDSTATRHNMDSLALKYLQRTTITYEMVAGKGAKQLPFNQVTIE 467

Query: 537 QVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E++++ LQL     P+L   E L  +Y+ L+ P+I V+S+ME  G+Q++ + L
Sbjct: 468 KAAPYAAEDADISLQLHHCFWPRLQQEEGLRQLYQELEIPLIPVLSRMERNGVQVNTEQL 527

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K  S E++  L  LE+  ++L+GE FNL+SPKQ+  IL+ KLK P   KT TGQ  T   
Sbjct: 528 KAQSDELAARLKRLEQEAFELAGESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAET 587

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++   D P+ + +LE+R LSK+KSTY D LP  +N  T RVHT Y  A T TGRL+S
Sbjct: 588 VLQELAL-DYPLPQLLLEYRTLSKLKSTYTDRLPLQVNSHTGRVHTSYHQAVTATGRLSS 646

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI++  G++IR+AFI+PP  +L++ADYSQIELRI+AH+++   L   FE   
Sbjct: 647 SDPNLQNIPIRSTEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEE 706

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH+  A EIF   +E V+P+ RR AK INF +IYG+S   L  QL I R+ A  YI+RY
Sbjct: 707 DIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAHGLGRQLGINRTAAQHYIERY 766

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+  Y+E      RQ GYVET+FGRR++  EI+S ++  RN  ER AINAP+QGS
Sbjct: 767 FQRYPGVKAYMENICQQARQKGYVETLFGRRLYLPEIHSRQTQRRNQAERTAINAPMQGS 826

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI   + L++ K   +M++Q+HDELVFEV E+++    + I  +M  A    
Sbjct: 827 AADIIKRAMIHADRWLQEQKANARMIMQVHDELVFEVAEDKLEATIRAIRENMAAAA--- 883

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L+VPL V I    NW E +
Sbjct: 884 -QLKVPLIVEIGSGTNWDEAH 903


>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
 gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
          Length = 933

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/977 (36%), Positives = 540/977 (55%), Gaps = 52/977 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   KLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
             A  +G +VTI + DKD  QLV P   L +T+   ++D  E VI K+G+ P+++V L A
Sbjct: 117 LQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDEAVIAKFGVRPDQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  EN+        L+R
Sbjct: 177 LMGDTVDNVPGVDKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGENLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++TDV +      L L + N   L        FT+ +  +           EP+ L
Sbjct: 236 ELVTIKTDVTLASGPRALDLREPNAETLAVLYARYGFTQALRELGGAATQAGLLTEPMAL 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  +    E    R T   +   S+  +    +++                     
Sbjct: 296 GAAAASART---EPGRARGTGFVSGPVSAPVEVDPALSA--------------------- 331

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++            
Sbjct: 332 PGQYDTILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPG-------- 383

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++    +            ++ L+ L     +    K+G + KYD  V+ R+GI++ 
Sbjct: 384 QAAYLPFGHNFP--GAPAQLERRQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGIALA 441

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS      
Sbjct: 442 GYSDDTLLQSFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATR 501

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L PKL  E  L  VY  ++ P+++V++++E  G+ +D   L++ S
Sbjct: 502 YAAEDADITLRLHHVLGPKLAAEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQS 561

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 562 ADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEALE 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +PN
Sbjct: 621 AIADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN 680

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+HR
Sbjct: 681 LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHR 740

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+SV   + DH     M+LQ+HDELVFE   + + T    +   M  A      LR
Sbjct: 861 IKRAMVSVDAWIADHAEHALMILQVHDELVFEADADFVDTLLGEVTARMSAAA----ELR 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V +NW E +
Sbjct: 917 VPLVVDSGVGDNWDEAH 933


>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
 gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 965

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1000 (36%), Positives = 541/1000 (54%), Gaps = 76/1000 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV
Sbjct: 15  QNPLVLVDGSSYLYRAFHAFPPLTN-SLGEPTGAMFGVLNMLKSLITQVQ----PSHIAV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + I+G EADD+I T
Sbjct: 70  VFDAKGKTFRDELFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLSIEGVEADDVIGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 130 LALQASSAGKKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 189

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPGI G+G KTA  LLQ  G++  I  N  ++        KK  E +    
Sbjct: 190 ALMGDSSDNIPGISGVGEKTALGLLQGIGSMAEIYANLDKVADLPIRGAKKLGEKLAAAK 249

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A LS  L  ++TDV + +  E LI+   N   LI +    EF + +N           
Sbjct: 250 ADADLSYVLATIKTDVELDLNPEQLIIGTANKDELIEYFARYEFKRWLN----------- 298

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                    +     S  +   +Q  KIN+ Q    L  +    
Sbjct: 299 -------------------------EALNDESSVTKPQEQAVKINNYQATPALAKQESAV 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   I+   Y  + N   +QQW++K+  +   +    T+ +D   ++ + I+ + L+  
Sbjct: 334 KNSVKIDRTLYETVDNQAKLQQWIEKIRQVKLVAVDTETNALDPMLAELVGISFA-LENG 392

Query: 418 DDTSFKVETIFI----------DLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEH 461
           +     +  +            DL   + Q      +         E LS LK   EN  
Sbjct: 393 EACYIPLAHVHQVAAQAENAQGDLFAESEQSSESRWEPVVGQLNKAECLSQLKPLLENPE 452

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---R 517
             KIG NIKYD  +    GI+M+G   D ML SYVL+S    H++  +A+++L +     
Sbjct: 453 IKKIGQNIKYDLTIFANNGINMQGVTFDTMLESYVLNST-GRHNMDDLAERYLGHHTIAF 511

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPM 576
           ++I    K+ +  D+I   +  E+A E+++V ++L   L  ++    +L+ +Y+ ++ P+
Sbjct: 512 EDIAGKGKNQLTFDQIELKKAAEYAAEDADVTMKLHQTLWREVAQSPELVKLYQEMELPL 571

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+S++E  G+ ID   L   S E S+ L +LE   ++L+G+ FNL+S KQL +ILF K
Sbjct: 572 VSVLSRIERNGVLIDSRALLAQSKEFSQKLTALENKAHELAGQHFNLASTKQLQEILFDK 631

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L  P   KT  G   T  + LE++   ++ + K ++E R LSK+KSTY D LP  +N++T
Sbjct: 632 LGLPVLKKTPKGAPSTNEEVLEEL-AYEHELPKLLVEHRGLSKLKSTYTDKLPQMVNRKT 690

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+    K+I+ADYSQIELR
Sbjct: 691 GRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIARKGFKVIAADYSQIELR 750

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH++    L   F    DIHR  AAEIFG+ +E V+ + RR AK INF +IYG+S F 
Sbjct: 751 IMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVTAEQRRSAKAINFGLIYGMSSFG 810

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ QL I R +A  Y+  YF R+PG+  ++   +   +  GYVET+FGRR++  +I S  
Sbjct: 811 LSRQLGIARGDAQRYMDLYFQRYPGVQTFMTNIREKAKSQGYVETLFGRRLYLPDIQSAN 870

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           +  R   ER AINAP+QG+AADI +RAMI + K++ D      M++Q+HDELVFEV E++
Sbjct: 871 AMRRKAAERVAINAPMQGTAADIIKRAMIDIDKAITD-DPDILMIMQVHDELVFEVKEDK 929

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           I   S +I   ME A      L VPL V++ V +NW E +
Sbjct: 930 IEHYSALIKSLMENAA----QLHVPLIVDVGVGDNWDEAH 965


>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440]
 gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440]
          Length = 915

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/989 (34%), Positives = 528/989 (53%), Gaps = 90/989 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I 
Sbjct: 57  VVFDAKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +   G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++  
Sbjct: 117 TLARSSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G    ++  N  ++        K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + + A LS +L  ++ DVP+ + +E L+  + +   L++    +EF   +          
Sbjct: 237 HRDAAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWV---------- 286

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                  E+ RD        +   +   K+ +            
Sbjct: 287 ----------------------AELQRDAAKAGDDVAPAVEPAVKVEA------------ 312

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  I++      W++KL      +F   T  +DA  ++ + ++ +   
Sbjct: 313 -----------KYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGLSFAVEP 361

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ L+     +        + +L  LK   E+    K+G N KYD  +
Sbjct: 362 HE--------AAYVPLAHDY--EGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDINI 411

Query: 476 LHRYG---ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           L   G   I MRG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I       +
Sbjct: 412 LAN-GSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQL 470

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             ++I+  +   +A E++++ L+L   L+ +L     +  V   ++ P++ V++++E  G
Sbjct: 471 TFNQINLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQG 530

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D +LLK  S E+   +  LE   Y+L+GE FNL SPKQLG IL+ KL  P  +KT  
Sbjct: 531 ALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTAK 590

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 591 GQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 650

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   L
Sbjct: 651 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R +
Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 770

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER A
Sbjct: 771 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAM+ V   L +  L  +++LQ+HDELV EV E+ +      I   
Sbjct: 831 INAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQH 890

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M +A      L VPL V   V  NW E +
Sbjct: 891 MSQAA----QLDVPLLVEAGVGANWDEAH 915


>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
 gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
          Length = 934

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/984 (35%), Positives = 530/984 (53%), Gaps = 67/984 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              L LVDGSS++YRA++A P L R  DG P  AI G   ML KLL   R +  A H A 
Sbjct: 7   RPTLLLVDGSSYLYRAYHAMPDL-RGPDGQPTGAIHGLVAML-KLL---RSQIGAEHAAC 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++ YP YKA RP +P+ L  Q+  +    +  G P +E+ G EADD+I T
Sbjct: 62  VFDAKGPTFRDDWYPLYKAQRPPMPDDLRLQIEPIHEVVRLLGWPVLEVPGIEADDVIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              +AEK G  V I + DKDL QLV+    L +T+  E +DIE V  K+G+PP+++V   
Sbjct: 122 LAQLAEKSGHRVVISTGDKDLAQLVTEHVTLINTMSRESLDIEGVKAKFGVPPDRIVDYL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTAA  + E+G+L+ ++  A  IK     EN+    +    +
Sbjct: 182 TLMGDTVDNVPGVEKVGPKTAAKWIAEHGSLDGVVAAAGSIKG-VAGENLRRALDWLPTA 240

Query: 244 RKLVMLRTDVPITIP------LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           RKLV ++TD  ++        LE L L + +   L +F     F      +         
Sbjct: 241 RKLVTVKTDCDLSGHVPAWPALEALALREVDPDGLRAFYMRNGFRTWTREL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                              E +      I ++   +L D        Q            
Sbjct: 292 -------------------EAQAPSAPVIASAAAPALDDMA------QASGNGDAPAQAP 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I  T+ +  W+ +L+     +    TD++D   ++ I I+ +     
Sbjct: 327 APAADGAAGRYETIFTTEQLDAWIARLQAAPLVAIDTETDSLDPMRARIIGISFAVQP-L 385

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   +                   E+L+ L+ + E+    K+G NIKYD  V  
Sbjct: 386 EAAYVPVGHDYPGAP---------DQLPLDEVLARLRPWLEDAGTRKVGQNIKYDSHVFA 436

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKI 533
            +G+++RG+  D ML SYVL++ +  H +AS+A + L       +++       IP   +
Sbjct: 437 NHGVTVRGYAHDTMLESYVLEAHK-PHGLASLADRHLGRSGINYEDLCGKGAGQIPFSHV 495

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  Q   ++ E+S + LQ+   L P+L  E +L  +YE ++ P  +V+ ++E  G+ ID 
Sbjct: 496 AVDQASTYSGEDSEMTLQVHQTLWPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDA 555

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S ++++ + +LE+  + ++G+ FN+SSPKQ+G+ILFTKL  P   KT +G   T
Sbjct: 556 GVLARQSHQLAQRMHTLEQEAHAIAGQPFNMSSPKQIGEILFTKLGLPVKKKTASGAPST 615

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L+++   D P+   ILE R L+K+K TY D LP  +N  T RVHT Y+ A  +TGR
Sbjct: 616 DEEVLQELAA-DYPLPARILEHRSLAKLKGTYTDKLPLMVNPSTGRVHTNYAQAVAITGR 674

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+T  G+++R AF++ P  KL+SADYSQIELR++AHI+    L + F 
Sbjct: 675 LSSNDPNLQNIPIRTAEGRRVREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLKAFA 734

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + +D+HR  AAE+F +    V+ + RR+AKTINF +IYG+  F LA  L I +  A DYI
Sbjct: 735 DGMDVHRATAAEVFNIAAADVTSEQRRYAKTINFGLIYGMGAFGLAASLGIEQKAARDYI 794

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RYF R+P +  Y+++TK    Q G+VET+FGRRI   EI       +   ER AINAP+
Sbjct: 795 ERYFARYPDVKRYMDETKAGAAQLGHVETLFGRRIVLPEIKGGNGPRKAAAERQAINAPM 854

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ + AMI+V K+++D   A+KM++Q+HDELV EVPE E+  A + +   M    
Sbjct: 855 QGTAADLIKLAMIAVQKAIDDEGRASKMIMQVHDELVLEVPEAELGWAREALPRLMAGVA 914

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L+VPL   +    NW+E +
Sbjct: 915 ----QLKVPLVAEVGEGANWEEAH 934


>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
 gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
          Length = 962

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/997 (35%), Positives = 539/997 (54%), Gaps = 64/997 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+    L+    G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHVFNYLTN-SGGEPTGAMYGVLNMLRSLVNQVN----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDDLFEQYKSHRPPMPDELRAQIQPLHNIIRALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A ++G  V I + DKD+ QLV+    L +T+ +  +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAAQDGKEVLISTGDKDMAQLVNQHIMLINTMNDSLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+ GIG KTA  LLQ  G+L+ I  N  R+        K     ++   
Sbjct: 181 ALQGDASDNIPGVKGIGEKTALALLQGIGSLQTIYANLDRVATLSVRGAKTLATKLVAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +    L         LI+  +  EF + +N V         
Sbjct: 241 QAADLSYLLATIKTDVALDMTHHQLTPSAQRREELIALFERYEFKRWLNDVMN------- 293

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           +I P++ +++  + K     T ++  T ++  Q +       KI                
Sbjct: 294 DINPILKNVSDNDKK-----TTLNHSTDLQAVQNTVFDVPNKKI---------------- 332

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            +   I+   Y  I     + +W+ K+E     +    TD +DA  +  + I+       
Sbjct: 333 -ATVKIDRSQYQTITTELQLTEWMAKIEQAKLVAVDTETDNVDAMSAHLVGISFSLSNGE 391

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQDSTGK------NTLTKEILSYLKKFFENEHFLK 464
              +         V+    DL   T  D+  +             L+ LK   EN    K
Sbjct: 392 ACYIPLAHTQQISVQPQQEDLFAETDNDAITQFQLASNQLNLTACLAQLKPLLENVEIKK 451

Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEI 520
           +G NIKYD  V   +GI ++G   D ML SY L+S    H++  +A+++L +     ++I
Sbjct: 452 VGQNIKYDLTVFANHGIELQGVAFDTMLESYTLNST-GRHNMDELAERYLDHKTIAFEDI 510

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDV 579
               K+ +  DKI+     E+A E++++ ++L   L   L     L+ ++  ++ P+++V
Sbjct: 511 AGKGKNQLTFDKIAIETATEYAAEDADITMKLHQQLITSLAKTPSLIKLFNEIEMPLVNV 570

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++++E  G+ ID D L   S E+ + L  +E  ++  +G+ FNL+S KQL +ILF KL  
Sbjct: 571 LARVEQNGVLIDSDKLLAQSKEMEQRLAEVEIAVHTAAGQAFNLASTKQLQEILFEKLAL 630

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KT  G   T  + LEQ+    + + K + E R LSK+KSTY D LP  IN+ T RV
Sbjct: 631 PVLKKTPKGAPSTNEEVLEQLAQQGHLVPKLLSEHRALSKLKSTYTDKLPKMINQHTGRV 690

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y  A T TGRL+S +PNLQNIPI+T+ G++IR+AFI+    K+++ADYSQIELRI+A
Sbjct: 691 HTSYHQAVTTTGRLSSSDPNLQNIPIRTEAGRRIRQAFIARDGYKIVAADYSQIELRIMA 750

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+A    +   F N  DIH+  AAEIFG+++ +V+ + RR AK INF +IYG+S F LA 
Sbjct: 751 HLANDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQRRSAKAINFGLIYGMSDFGLAN 810

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL I R EA +Y+ RYF R+P + +++   +      GYVET+FGRR++  EI S  +  
Sbjct: 811 QLAISRDEAKEYMARYFQRYPNVQQFMRDIRESASVKGYVETLFGRRLYLPEIKSNNAIR 870

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAP+QG+AADI + AMIS+ K +   +   KM++Q+HDEL+FEV +E I  
Sbjct: 871 RKAAERLAINAPMQGTAADIIKIAMISIDKQIRADQ-NIKMIMQVHDELIFEVKQECIEY 929

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            + +I   MEKA    I ++VPL   + V  NW E +
Sbjct: 930 YTGLIKTEMEKA----IAMKVPLIAEVGVGANWDEAH 962


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
          Length = 921

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/989 (35%), Positives = 534/989 (53%), Gaps = 81/989 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N L LVDGSS++YRAF+A+     R   GLP  A+    NM+  L    RK+    
Sbjct: 1   MAPSNPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSL----RKQYPDC 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV+FD    TFR++IYP+YKA R  +P+ L  Q+  +    +A G P + ++G EADD
Sbjct: 57  HVAVVFDAKGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T    A ++   V I + DKD+ QLVS    L DT+K+ K D E VI+K+G+PPE +
Sbjct: 117 VIGTLARQATEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENI 233
           +   AL GD +DNIPG+ G+G KTA  LLQ  G++++I  N  ++        K   +  
Sbjct: 177 IDYLALMGDKVDNIPGMTGVGEKTALALLQGIGSIDDIAANLDKVAALGFRGSKAFADKF 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E  E  RLS +L  ++TDV +   LE L+L+  +   L++  +  E   LI  + +   
Sbjct: 237 REQEEQVRLSYRLATIKTDVELEQSLEELLLKPVDKESLLAVYREYELRNLIKELESG-- 294

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                                        + +    Q  +  +  + + + +T       
Sbjct: 295 ---------------------------GEEGSESAGQDEAGDESAAPVAAIET------- 320

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  I++  +   W+++L+     +F   T ++D   ++ + ++ + 
Sbjct: 321 -------------DYRCILDEAEFDGWLEQLKAAPLFAFDTETTSLDYMEARIVGVSFAV 367

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              K          ++   V  S+           +L  LK   E+   LK+G N+KYD+
Sbjct: 368 EAGK-AAYVPFGHDYLGAPVQLSEAV---------VLGKLKPLLEDPTCLKVGQNLKYDR 417

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIP 529
            VL  + I ++G   D ML SYVL+S  S HD+ S+A+++L       ++I       + 
Sbjct: 418 NVLLNHDIDLQGIAYDTMLESYVLNSTASRHDMDSLAKRYLGVETTSFEDIAGKGVKQLT 477

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I   Q   +A E++++ L+L   L  +L     L  V+  ++ P++ V+++ME+ G 
Sbjct: 478 FNQIELEQAAPYAAEDADITLRLHQTLWGQLEAVPGLAKVFSEIELPLLPVLARMELLGT 537

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  LL Q S EI   L  LE+  ++L+G++FNLSSPKQLG+ILFTKL  P   KT  G
Sbjct: 538 TIDPKLLHQQSQEIELRLAELEKQAHELAGQEFNLSSPKQLGEILFTKLGLPIIKKTPKG 597

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T  + L ++      + + ++E R L+K+KSTY D LP  I  +T RVHT Y  A  
Sbjct: 598 APSTAEEVLAELAET-YELPQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVA 656

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR+AFI     KL++ADYSQIELRI+AH++    L 
Sbjct: 657 ATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLL 716

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F    DIH+  AAE+FGV I+ V+  MRR AK INF +IYG+S F LA QL I R+EA
Sbjct: 717 TAFAEGKDIHKATAAEVFGVAIDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEA 776

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+  YF R+PG+ EY+E+T+      GYVET+FGRR++  +I S  + +R   ERAAI
Sbjct: 777 QKYMDLYFERYPGVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNAGLRKAAERAAI 836

Query: 889 NAPIQGSAADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI+V   +      + +ML+Q+HDELVFE+ EE++     II   
Sbjct: 837 NAPMQGTAADIIKRAMINVDSWIRGIEDESIRMLMQVHDELVFEIREEKLEEYIAIIKEK 896

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M  A      L VPL V     +NW + +
Sbjct: 897 MSAAA----ELDVPLVVEAGTGDNWDQAH 921


>gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814]
 gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814]
          Length = 956

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1000 (40%), Positives = 583/1000 (58%), Gaps = 74/1000 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK---ESI 57
           + +++HL+LVD S +I+RAF+A P L+RK DGLPV A++GFCNML+KLL  S++      
Sbjct: 7   LNEDSHLYLVDASGYIFRAFHALPPLTRKSDGLPVGAVSGFCNMLYKLLAESKEVTGNGK 66

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           A+HFA IFD  + TFRN++ P YKA RP  PE L PQ PLVR A  AFG PA+E+  +EA
Sbjct: 67  ATHFACIFDASSKTFRNDLDPRYKAQRPPTPEDLAPQFPLVRRAAIAFGTPAVELDNYEA 126

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IA Y  IAE++G  VTIIS+DKDLMQLV+    + DT+K+  +  E V+ K+G+ P+
Sbjct: 127 DDLIAAYARIAEEKGAKVTIISSDKDLMQLVTDKVSMMDTMKDRHLSFEAVMDKFGVAPD 186

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL----INASRIKQK------ 227
           ++  +QAL GDS+DN+PG+PGIG KTAA L+ E+G+LE +L     +    K K      
Sbjct: 187 RVTHVQALAGDSVDNVPGVPGIGLKTAAQLINEFGDLEALLKFSSEHVPDKKNKAHELLT 246

Query: 228 -KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            KR EN++E+A+ AR+S KLV L    P+ + +E   + +    +L+ FL  +EF  +  
Sbjct: 247 FKRHENLVEFADDARISFKLVTLDDHTPVPVAIEEFGVCEPELEQLVPFLDEMEFRTITR 306

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           RV       A  +                                              T
Sbjct: 307 RVVQALGDGAEPV---------------------------------------------AT 321

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P           +    +   YT ++   D+ +W+++ + +G       TD +DA  +  
Sbjct: 322 PASGEATIPVTETNNVFDTSQYTTLIKPDDLVEWMRRAQAVGVIGVDTETDGLDAIGANL 381

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + ++++             T   DL      D   +    K  L  LK   E+   LK+G
Sbjct: 382 VGVSLALGPNDACYIPLGHTGDGDL----LGDGAPEQMDMKLALGILKPMLEDPTILKVG 437

Query: 467 HNIKYDKLVLHRYG-------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---T 516
            N KYD  V HR G       I     +D ML+S  L++G+ +H +  +++    +    
Sbjct: 438 QNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAALEAGQHNHGMDVLSELHFDHKPIP 497

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            KE+  + K  I  DK+   +  ++A E+++V L+LW LL+P+L  E +  +YE +++PM
Sbjct: 498 FKEVAGTGKKQITFDKVPVPEATKYAAEDADVTLRLWALLKPRLSAEGMATLYETIERPM 557

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + VV+QME  GI ++++ L ++S + ++ +   E   Y+L+G +FN+ SPKQLG+ILF +
Sbjct: 558 VPVVAQMERAGIFVERETLSRLSGDFAQRMAQYEAEAYELAGREFNMGSPKQLGEILFGE 617

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           ++ P G KTKTG W T A  LE +    + + K +L WR LSK+KSTY D+L   IN  T
Sbjct: 618 MELPGGKKTKTGAWATGADALEDLAAEGHELPKILLGWRSLSKLKSTYTDALGECINAET 677

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT ++L    TGRL+S +PNLQNIPI+T+ G+KIR AF++     LI+ADYSQIELR
Sbjct: 678 GRVHTSFNLVGAQTGRLSSSDPNLQNIPIRTEEGRKIRAAFVAQEGNVLIAADYSQIELR 737

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAHI  I  L   F N LDIH M A+E+FGV IE + P +RR AK INF IIYGIS F 
Sbjct: 738 LLAHIGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAINFGIIYGISAFG 797

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL IPR EA++YIK Y  +FPGI +Y+++ K F R+ GYVET FGRRI    IN  K
Sbjct: 798 LARQLGIPRGEASEYIKAYNAKFPGILKYMDEMKAFAREKGYVETAFGRRIWMKGIN-GK 856

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
              R   ER AINAP+QGSAADI +RAM+ +  +LE   L  KMLLQ+HDEL+FE P+ E
Sbjct: 857 GPERGFAERQAINAPLQGSAADIIKRAMVKMPAALEKSGLQAKMLLQVHDELIFEAPKAE 916

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                +++   ME A  P ++L VPL V  + +++W E +
Sbjct: 917 AEKTIKLVKKIMETATFPVMDLSVPLLVEAEAAHSWNEAH 956


>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
 gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
          Length = 927

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/990 (35%), Positives = 525/990 (53%), Gaps = 77/990 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M K   L LVDGSS++YRAF+A P L R   G P      AI G  NML  L    RK+ 
Sbjct: 1   MSKPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASPATGAIRGMINMLQAL----RKDY 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A + A +FD    TFR+ +YP+YKA+R  +P+ L  Q+  +    +  G P + + G E
Sbjct: 56  PADYAACVFDASGPTFRDTLYPEYKAHRAPMPDDLRAQIEPIHQVVRLLGWPVVCVPGVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T    A ++G  V + S DKDL QLV     + DT+  ++ D+  V  ++G+PP
Sbjct: 116 ADDVIGTLAACAARQGIEVIVSSGDKDLSQLVDEHITIIDTMSGKRRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             MV  Q L GD++DN+PG+P +G KTAA  L EYG+L+ +L  A  IK     EN+   
Sbjct: 176 SLMVDYQTLVGDAVDNVPGVPKVGPKTAAKWLNEYGSLDGLLARAGEIKG-VAGENLRNA 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILED------CNGPRLISFLKALEFTKLINRVAT 290
            +     R+LV +RTD  +   +E L   D          +L  F +   F  L   +  
Sbjct: 235 LDWLPKGRELVTIRTDCDLAGHVEGLPALDGIAAGALETAQLREFYEKFGFKGLARALED 294

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T   +A    P                           +     +D  +   +E    + 
Sbjct: 295 TTPANATATLP--------------------------GASGDLFADSGTTFVAEAAQGR- 327

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                           +Y  I+  ++  +W  +++     +    T+++D   ++ + ++
Sbjct: 328 --------------EVAYDTILAWEEFDRWFARIQAADLVALDTETNSLDELRAQIVGLS 373

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S               +I L+   S     +      +L  LK + E+    K+G ++K
Sbjct: 374 FSVEPGA--------AAYIPLAH--SGPEAPEQLPLDTVLERLKPWLEDASRPKLGQHVK 423

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKS 526
           YD+ V   +GI +RG+  D ML SYVL+     H++AS+A++       + +++      
Sbjct: 424 YDRHVFANHGIDVRGYAHDTMLQSYVLE-VHRPHNLASLAERHTGRTGISYEDLCGKGAK 482

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            IP  ++   Q   ++ E+S+  L +  +L P +  ++ L     L+    +V+ ++E  
Sbjct: 483 QIPFAQVPVEQAAAYSCEDSDQTLDVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERN 542

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID   L+Q S ++ + +L LE+  YD++G+ FNL SPKQLG+I F KL  P   KT 
Sbjct: 543 GVLIDTATLQQQSHDLGQRILRLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGLPVVKKTA 602

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   T  + LE++   D P+   ILE R LSK+K TY D L    + RT RVHT Y+ A
Sbjct: 603 TGARSTDEEVLEKL-AEDYPLPAKILEHRSLSKLKGTYTDKLGQLADPRTGRVHTHYAQA 661

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRL+S EPNLQNIPI+T  G+++R AF++PP + + SADYSQIELRI+AH++    
Sbjct: 662 VAVTGRLSSNEPNLQNIPIRTAEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGDDA 721

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F   LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+S F LA  L I   
Sbjct: 722 LLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIDNK 781

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            AA YI RYF R+PG+ +Y+++TK   +  GYVET+FGRR++  EINSP    R   ERA
Sbjct: 782 AAAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGRRLYLPEINSPNGPRRGAAERA 841

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AAD+ ++AM++V   L+  K    M++Q+HDELVFE+PEEE       +  
Sbjct: 842 AINAPMQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVHDELVFELPEEESGWLRTEVPR 901

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M         L+VPL   + +  NW++ +
Sbjct: 902 LMAGVA----ELKVPLLAEVGMGPNWEKAH 927


>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
          Length = 917

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/983 (35%), Positives = 524/983 (53%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLVS    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 123 TLAREAERRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LALIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            RKLV + T   +   LE     L  +      L        F   +  V +        
Sbjct: 242 GRKLVTVETACDLAPHLESIDASLKSDGEARDLLRDIFARYGFKTWLREVDS-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       +     +   + + + +  TP++         
Sbjct: 294 -------------------------APAEGGGADAPDGEPAPVIAVDTPRE--------- 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I   +    W  KLE     +F   T  +D   ++ + ++ +    K 
Sbjct: 320 ---------YETIQTWEQFDAWFAKLEAAELTAFDTETTALDPMVARLVGLSFAVEPGK- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+          +     ++L+ LK + E+    K+G ++KYD  VL  
Sbjct: 370 AAYLPVAHRGPDMP---------EQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI + G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YGIELNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME  G+ ID  
Sbjct: 480 LAQAAEYAAEDADITLQLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDA 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+  S EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 RLQAQSNEIATRLVDLEAQAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFARYPGVAQYMEDTRATAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   KLA++M++Q+HDELV EVP++E++   + +   M     
Sbjct: 839 GTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGANWEEAH 917


>gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Shigella flexneri 2930-71]
          Length = 884

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/944 (36%), Positives = 523/944 (55%), Gaps = 71/944 (7%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML  L+   +     +H AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +
Sbjct: 1   MLRSLIMQYK----PTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVK 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI 163
           A G+P + + G EADD+I T    AEK G  V I + DKD+ QLV+P   L +T+    +
Sbjct: 57  AMGLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTIL 116

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
             E V+ K+G+PPE ++   AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +
Sbjct: 117 GPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEK 176

Query: 224 IKQ------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           I        K     + +  E A LS +L  ++TDV + +  E L ++      L+   K
Sbjct: 177 IAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFK 236

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
             EF +    V       A   +                        T    Q +S++D+
Sbjct: 237 KYEFKRWTADVEVGKWLQAKGAK------------------------TAAKPQETSVADE 272

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
             ++ +                   I+ D+Y  I++ + ++ W+ KLE     +F   TD
Sbjct: 273 APEVTA-----------------TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETD 315

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           ++D   +  + ++ +           V   ++D     S          +  L  LK   
Sbjct: 316 SLDNISANLVGLSFAIEPGV-AAYIPVAHDYLDAPDQISH---------ERALELLKPLL 365

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           E+E  LK+G N+KYD+ +L  YGI +RG   D ML SY+L+S    HD+ S+A++WL + 
Sbjct: 366 EDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHK 425

Query: 517 ---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERL 572
               +EI    K+ +  ++I+  +   +A E+++V LQL L + P L   K  L+V+E +
Sbjct: 426 TITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENI 485

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P++ V+S++E  G++ID  +L   S E++  L  LE+  ++++GE+FNLSS KQL  I
Sbjct: 486 EMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTI 545

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF K       KT  G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  I
Sbjct: 546 LFEKQGIKPLKKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMI 604

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N +T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQ
Sbjct: 605 NPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQ 664

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+
Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGM 724

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I
Sbjct: 725 SAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDI 784

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S   + R   ERAAINAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV
Sbjct: 785 KSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEV 844

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ++++   ++ I   ME        L VPL V +    NW + +
Sbjct: 845 HKDDVDAVAKQIHQLMENCT----RLDVPLLVEVGSGENWDQAH 884


>gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183]
 gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175]
 gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183]
 gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175]
          Length = 921

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/985 (35%), Positives = 525/985 (53%), Gaps = 81/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++ L 
Sbjct: 121 IARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I+E A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      L ++  +   LI     +EF + +            
Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAE---------- 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                VLD   T N  I   +E   D+T                                
Sbjct: 291 -----VLDNKITANTSIDAASETQEDSTP------------------------------- 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+   ++  W+ KL+     +    T ++D   ++ + I+ +    K
Sbjct: 315 ---VEAIATQYDCILTEAELDAWIAKLKQADLMAVDTETTSLDYMVAELVGISFAVEAGK 371

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++                    L  L+   E+    K+G N+KYD  +L 
Sbjct: 372 -AAYLPLTHDYVGAPT---------QIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILA 421

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     +EI       +  ++I
Sbjct: 422 NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQI 481

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  ++  ++ P+I V+S +E  G+ ID 
Sbjct: 482 PLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFIEVELPLIQVLSDIERQGVLIDS 541

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ + +LEE  YD++GEKFNL SPKQL  + F KL +P   KT  G    
Sbjct: 542 MLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPS- 600

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 601 TAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 660

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 661 LSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFA 720

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR EA  YI
Sbjct: 721 EGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYI 780

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 781 DTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPM 840

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++     + I   M +A
Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L V L     + NNW E +
Sbjct: 901 A----DLDVELLAEAGIGNNWDEAH 921


>gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51]
 gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51]
          Length = 915

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/989 (34%), Positives = 530/989 (53%), Gaps = 90/989 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G+P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+ ++ +YKANRP +P+ L  Q+  +  + +A G P + ++G EADD+I 
Sbjct: 57  VVFDAKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +   G  V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++  
Sbjct: 117 TLARSSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G    ++  N  ++        K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLGKVPALAIRGAKTLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + + A LS +L  ++ DVP+ + +E L+  + +   L++    +EF   +          
Sbjct: 237 HRDAAFLSYELATIKVDVPLDVEVEALVCGEPDRDALLALYTEMEFKSWV---------- 286

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                  ++ R+        + +++  +K+              
Sbjct: 287 ----------------------ADVQREAARVGDDVAPVAEPVAKVE------------- 311

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  I++      W++KL      +F   T  +DA  ++ + ++ +   
Sbjct: 312 ----------PKYETILDQTRFDAWLEKLRQAPLFAFDTETTGLDAQKAQLVGLSFAVAP 361

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ L+     +          +L  LK   E+    K+G N KYD  +
Sbjct: 362 HE--------AAYVPLAHDY--EGAPAQLDRDAVLLALKPLLEDPAKAKVGQNAKYDINI 411

Query: 476 LHRYG---ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
           L   G   I+MRG   D ML SYVL+S  + HD+ S+AQK+L +T    ++I       +
Sbjct: 412 LAN-GSPAIAMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQL 470

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             ++I   +   +A E++++ L+L   L+ +L     L  V   ++ P++ V++++E  G
Sbjct: 471 TFNQIDLDKAGPYAAEDADITLRLHHALQARLAQTPSLQPVLMDIEMPLVPVLAKIERQG 530

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D  LL   S E+ + +  LE   Y+L+GE+FNL SPKQLG IL+ KL  P  +KT  
Sbjct: 531 ALVDAALLHVQSGELGEKMAELERRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTAK 590

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ  T    L+++     P+ + ++++R LSK+KSTY D LP  IN RT R+HT Y  A 
Sbjct: 591 GQPSTAEAVLDELAELGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 650

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S +PNLQNIPI+T  G++IR+AFI+ P  KL++ADYSQIELRI+AH+AK   L
Sbjct: 651 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R +
Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALENVTVDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQ 770

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + DYI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  +IN+   ++R   ER A
Sbjct: 771 SQDYIDRYFARYPGVLAYMERTRTQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAM++V   L +  L  +++LQ+HDELV EV E+ +      I   
Sbjct: 831 INAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQH 890

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M KA      L VPL V   +  NW E +
Sbjct: 891 MSKAA----QLDVPLLVEAGIGANWDEAH 915


>gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 933

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/977 (35%), Positives = 535/977 (54%), Gaps = 52/977 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+ +Y DYKANRP + + L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDALYADYKANRPSMADDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
             A  +G +VTI + DKD  QLV P   L +T+   ++D    VI K+G+ P+++V L A
Sbjct: 117 LQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGDNLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++TDV +      L L + N   L        FT+ +  +           EPV L
Sbjct: 236 ELVTIKTDVTLASGPRALDLREPNTETLAVLYARYGFTQALRELGGASVQSGLLSEPVAL 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  +    E    R T   +   ++  +    +++                     
Sbjct: 296 GAAAATART---EPGRARGTGFVSGPVNAAVELDPALSA--------------------- 331

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++    K       
Sbjct: 332 PGAYETILTQEQLDSWIAQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGK------- 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++    +               L+ L     +    K+G + KYD  V+ R+G+ + 
Sbjct: 385 -AAYLPFGHNFP--GAPVQLDRTHALAQLAPLLTDPAVRKVGQHGKYDLHVMRRHGVELA 441

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS      
Sbjct: 442 GYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATR 501

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L PKL  E  L  VY  ++ P++DV++++E  G+ +D   L++ S
Sbjct: 502 YAAEDADITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQS 561

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 562 ADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEALE 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +PN
Sbjct: 621 AIADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN 680

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   F +  D+HR
Sbjct: 681 LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHR 740

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+ V   + DH    KM+LQ+HDELVFE   + + T    +   M  A      LR
Sbjct: 861 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMASAA----ELR 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V ++W + +
Sbjct: 917 VPLVVDSGVGDDWDQAH 933


>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
 gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
          Length = 912

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/978 (35%), Positives = 536/978 (54%), Gaps = 75/978 (7%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVDGSS++YRAF+A P L R  +G P  AI G  NML +L ++      A + A +FD 
Sbjct: 1   MLVDGSSYLYRAFHAMPDL-RGPNGAPTGAIYGMINMLRRLRKDY---PDAEYMACVFDA 56

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              TFR+++Y +YKA R  +P+ L+ Q+  +  A +A G P + ++G EADD+I T    
Sbjct: 57  KGKTFRDDLYAEYKAQRASMPDDLVKQIEPIHEAVRAMGWPILMVEGIEADDVIGTLAVE 116

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           A K G    I + DKDL QLV+    L +T+  EK+D + VI K+G+PPE+++    L G
Sbjct: 117 AVKHGMDTVISTGDKDLAQLVNDRVMLINTMSNEKLDRDGVIAKFGVPPERIIDYLTLIG 176

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D++DN+PG+  +G KTA   L +YG L+ I+ +A+ IK     +N+    +    ++ L+
Sbjct: 177 DTVDNVPGVDKVGPKTAVKWLTQYGTLDGIVEHAADIKGA-VGDNLRRALDWLPQAKTLI 235

Query: 248 MLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            ++TD  ++  +    E L     +   +I F     F   +  ++   +   A      
Sbjct: 236 TVKTDCDLSGHMDTIVESLTQRPEDKDAMIDFFTRNGFKTWLRELSDKPEAADA------ 289

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                     Q +  +D   ++                      
Sbjct: 290 ----------------AAAPAADAAPQGALFADDAPEVE--------------------- 312

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+   ++++W+QK+++    S    T ++    ++ + I++            
Sbjct: 313 --KHYETILTEAELERWLQKIDSAVLTSIDTETTSLIPMQAQLVGISLCCEPGV-AAYIP 369

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           V   + D+          +    + +L  +K + E+    K+G N+KYD  +   +G+++
Sbjct: 370 VAHHYQDVP---------QQLSRELVLEKMKPWLEDASKAKVGQNLKYDSHIFANHGVNL 420

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQ 539
           RG   D +L SYV +S RS HD+ S+A + L+    T +E+     S I  +++   +  
Sbjct: 421 RGIVHDTLLESYVFESHRS-HDMDSLALRHLNRKTITFQEVCGKGASQIGFEQVEIGRAT 479

Query: 540 EHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           E+A E++++ LQL   + P +  +  L  VYE+++ P   V+ ++E  G+ ID DLL + 
Sbjct: 480 EYAAEDADITLQLHQRMWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQ 539

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+ K +L +E+N Y+L+ + FNL+SPKQ+G+I F KLK P   KT +G   T  + L+
Sbjct: 540 SNELGKRMLEIEQNAYELAEQPFNLNSPKQIGEIFFEKLKLPVVKKTPSGSPSTDEEVLQ 599

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D P+ K +LE+R LSK+KSTY D LP  I+  T RVHT Y+ A  +TGRLAS +P
Sbjct: 600 KL-AEDYPLPKVLLEYRGLSKLKSTYTDKLPKMIDPTTGRVHTNYAQAVAVTGRLASNDP 658

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+   G++IR AFI+ P   ++SADYSQIELRI+AHI+    + Q F +  DIH
Sbjct: 659 NLQNIPIRNAEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENMLQAFADGEDIH 718

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAEIFGV    V  + RR+AK INF +IYG+S F LA  L I RS A  YI+RYFHR
Sbjct: 719 RATAAEIFGVERRAVDSEQRRYAKVINFGLIYGMSAFGLAGNLGIERSAAQSYIERYFHR 778

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+  Y+++T+   +  GYV+T+FGRR+   EINSP    R   ERAAINAP+QG+AAD
Sbjct: 779 FAGVKRYMDETRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGTAAD 838

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + AMI+V   LE  KL +KM++Q+HDELV EVPE E+    + +   M         L
Sbjct: 839 LIKLAMIAVQGWLETEKLQSKMIMQVHDELVLEVPETELPLVREKLPELMRHVA----QL 894

Query: 959 RVPLKVNIKVSNNWQEEN 976
           +VPL   + V NNW + +
Sbjct: 895 KVPLIAEVGVGNNWDKAH 912


>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
 gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
          Length = 935

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/985 (35%), Positives = 525/985 (53%), Gaps = 81/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 20  KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQ----PSHIAV 74

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 75  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGT 134

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++ L 
Sbjct: 135 IARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLL 194

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I+E A
Sbjct: 195 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA 254

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      L ++  +   LI     +EF + +            
Sbjct: 255 DMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAE---------- 304

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                VLD   T N  I   +E   D+T                                
Sbjct: 305 -----VLDNKITANTSIDAASETQEDSTP------------------------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+   ++  W+ KL+     +    T ++D   ++ + I+ +    K
Sbjct: 329 ---VEAIATQYDCILTEAELDAWIAKLKKANLMAVDTETTSLDYMVAELVGISFAVEAGK 385

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++                    L  L+   E+    K+G N+KYD  +L 
Sbjct: 386 -AAYLPLTHDYVGAPT---------QIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILA 435

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     +EI       +  ++I
Sbjct: 436 NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQI 495

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  ++  ++ P+I V+S +E  G+ ID 
Sbjct: 496 PLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDS 555

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ + +LEE  YD++GEKFNL SPKQL  + F KL +P   KT  G    
Sbjct: 556 MLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPS- 614

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 615 TAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGR 674

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 675 LSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFA 734

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR EA  YI
Sbjct: 735 EGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYI 794

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 795 DTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPM 854

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++     + I   M +A
Sbjct: 855 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 914

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L V L     + NNW E +
Sbjct: 915 A----DLDVELLAEAGIGNNWDEAH 935


>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
 gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
 gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
          Length = 921

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/985 (35%), Positives = 525/985 (53%), Gaps = 81/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     SH AV
Sbjct: 6   KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQ----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +    +A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  E  AV I + DKD+ QLV     L +T+ +  +  E V  K+G+ P++++ L 
Sbjct: 121 IARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDLL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ N+L    ++ +      K     I+E A
Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      L ++  +   LI     +EF + +            
Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAE---------- 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                VLD   T N  I   +E   D+T                                
Sbjct: 291 -----VLDNKITANTSIDAASETQEDSTP------------------------------- 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I+   ++  W+ KL+     +    T ++D   ++ + I+ +    K
Sbjct: 315 ---VEAIATQYDCILTEAELDAWIAKLKEADLMAVDTETTSLDYMVAELVGISFAVEAGK 371

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++                    L  L+   E+    K+G N+KYD  +L 
Sbjct: 372 -AAYLPLTHDYVGAPT---------QIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILA 421

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     +EI       +  ++I
Sbjct: 422 NAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQI 481

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  ++  ++ P+I V+S +E  G+ ID 
Sbjct: 482 PLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDS 541

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ + +LEE  YD++GEKFNL SPKQL  + F KL +P   KT  G    
Sbjct: 542 MLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPS- 600

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R LSK+KSTY D LP  +N +T RVHT Y  A+  TGR
Sbjct: 601 TAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTNYHQANAATGR 660

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L + F 
Sbjct: 661 LSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFA 720

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR EA  YI
Sbjct: 721 EGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQTYI 780

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+  Y+E+T+      GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 781 DTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERAAINAPM 840

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++ + ++ + +    M++Q+HDELVFEV  ++     + I   M +A
Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L V L     + NNW E +
Sbjct: 901 A----DLDVELLAEAGIGNNWDEAH 921


>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 963

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/989 (35%), Positives = 543/989 (54%), Gaps = 84/989 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P LS    G P  AI G  NML +L      ++     A++FD
Sbjct: 40  LLLVDGSSYLYRAFHAFPPLSNSK-GEPTGAIYGVLNMLRRLFLQYSPQN----MAIVFD 94

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+ ++ +YKA+RP +P+ L  Q+  +     A G+P + ++G EADD+I T   
Sbjct: 95  APGETFRSALFSEYKAHRPSMPDDLRAQIAPLHHILSAMGLPLLVVEGVEADDVIGTLAK 154

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            AEK G+ V I + DKD+ QLVSP   L +T+ ++ +D + V +K+G+PP+ +V L AL 
Sbjct: 155 DAEKAGYEVVISTGDKDMAQLVSPHITLINTMNDKTLDPDGVCEKFGVPPDLIVDLLALM 214

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAETA 240
           GDS DNIPG+PGIG KTA  LLQ  G L+ +  +  +I        +   E ++++ E A
Sbjct: 215 GDSADNIPGVPGIGEKTAQALLQGMGGLDKLFDHLDKIADLSFRGARTLAEKLIKHQEQA 274

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+L  ++TDV + I  + L +       L       EF   +       D +A    
Sbjct: 275 YLSRQLATIKTDVSLDIRCDELQVCPPQIDELKKLFSHYEFKTYLA------DVEAGKWP 328

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              L+  +++N  I+  T+  +                                      
Sbjct: 329 ATHLNSKSSKNNPISSSTDPLK-------------------------------------- 350

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              + D Y  I+N +    W+++L+     +    TD +D   +  I I+ +    K   
Sbjct: 351 AIFSTDDYETILNEERWFVWLERLKKASLFAIDTETDGLDTKTAHLIGISFAVAPGK--- 407

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L     +          ++L+  K   E+   LK+G N+K+D+ +L  YG
Sbjct: 408 -----AAYLPLGHDYPE--APAQLNRDKVLALFKPLLEDPQALKVGQNLKFDQSLLANYG 460

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I ++G   D ML SYV +S    HD+ S++++ L++     ++I    K+ +  ++I   
Sbjct: 461 IKLQGIAFDTMLESYVFNSVAGRHDMDSLSERHLNHKTLSFEDIAGKGKNQLTFNQIPLE 520

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           Q   +A E+++V L+L L L PKL     L+ V + ++ P++ V+S+ME TG+ ID D+L
Sbjct: 521 QAAIYAAEDADVTLRLHLALWPKLKENPDLMKVLQEIEMPLLSVLSRMERTGVMIDPDIL 580

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S E+   L  LE+  +D++GE FNL+S +QL  IL+ K   P   KT  G   T   
Sbjct: 581 LNHSKELQLRLTELEKKAHDIAGETFNLNSTQQLQTILYEKQTLPVLKKTPKGAPSTNEA 640

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L ++   D P+ K ILE R L+K+K+TY D LP  I+  + RVHT Y  A T TGRL+S
Sbjct: 641 VLAELAL-DYPLPKIILEHRSLTKLKTTYTDKLPLMIHPLSGRVHTSYHQAVTSTGRLSS 699

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++ + G++IR AFI+P   ++++ADYSQIELRI+AH+++   L   F    
Sbjct: 700 RDPNLQNIPVRNEEGRRIRHAFIAPRGYQIVAADYSQIELRIMAHLSQDQGLLNAFSEGQ 759

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + AAE+FG+ + +VS Q RR AK INF +IYG+S F LA QL + R EA  Y+  Y
Sbjct: 760 DIHLITAAEVFGLPVSQVSAQQRRSAKAINFGLIYGMSAFGLARQLNVSRFEAERYMNLY 819

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P + +Y+++T+    +NGYV T+ GRR++  +I+S  ++ R   ER AINAP+QG+
Sbjct: 820 FTHYPKVLDYMQRTREEAVKNGYVTTLEGRRLYLADIHSKNANRRKAAEREAINAPMQGT 879

Query: 896 AADITRRAMISVHKSLE--DHKLATK------MLLQIHDELVFEVPEEEITTASQIIVHS 947
           AADI +RAMI +   L+  + KLA K      +++Q+HDELVFEV +  + +A+  I   
Sbjct: 880 AADIIKRAMIHIDFWLQQEEQKLAPKQKSRVNLIMQVHDELVFEVHDSVLKSATDKIREL 939

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           MEK+    +     LKV+I   NNW++ +
Sbjct: 940 MEKSTQNLL-----LKVDIGFGNNWEQAH 963


>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
 gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
          Length = 933

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/977 (35%), Positives = 537/977 (54%), Gaps = 52/977 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +G  VTI + DKD  QLV P   L +T+   ++D    VI K+G+ P+++V L A
Sbjct: 117 LQGAADGLQVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGDNLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++TDV +      L L + N   L        FT+ +  +           EPV L
Sbjct: 236 ELVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAQAGLLAEPVAL 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  +    E    R T   +   ++  D    +++                     
Sbjct: 296 GAAAATART---EPGRARGTGFVSGPVNAAVDLDPSLSA--------------------- 331

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++            
Sbjct: 332 PGQYETILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPG-------- 383

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++    H             + L+ L     +    K+G + KYD  V+ R+G+++ 
Sbjct: 384 QAAYLPFGHHFP--GAPAQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVALA 441

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS      
Sbjct: 442 GYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATR 501

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L P+L  E  L  VY  ++ P++DV++++E  G+ +D   L++ S
Sbjct: 502 YAAEDADITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQS 561

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 562 ADLSKRMLAAQQKATELAGRSFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEALE 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +PN
Sbjct: 621 AIADQHELPRVILEYRGLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN 680

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+HR
Sbjct: 681 LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHR 740

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+
Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI
Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM++V   + +H    KM+LQ+HDELVFE   + + T    +   M  A      LR
Sbjct: 861 IKRAMVNVDGWIANHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMAGAA----ELR 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V +NW + +
Sbjct: 917 VPLMVDSGVGDNWDQAH 933


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/989 (34%), Positives = 538/989 (54%), Gaps = 51/989 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MNSIDKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E +  E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDRVFMYRPKHTGGFEVMGTEEVKTKFNIQT 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            E+++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 TEQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++TDVPI + ++ L+ E+ N   L    + LEF  LI+RV      +
Sbjct: 236 NREMITFSKFLATIKTDVPIQLDMDSLVREEPNEEELRKIFEELEFRTLIDRVLKKGSGN 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTT--IKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           +++  P     +       A       + +  I+   F++ + + + ++     +   L 
Sbjct: 296 SSSPTPTSPVPDLFAGTLFAQPQTSTPENSAPIQGDLFANFAGEGTGVS-----ENSNLT 350

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           RL+ L      +  Y  I       + +QKL T    S    T   +   ++ + ++ S 
Sbjct: 351 RLEML------DVDYQLIDTEDKRAEIIQKLLTSEILSIDTETTGTEPMDAELVGMSFSD 404

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + +          ++ +     +          +I++  +  FENE  +K+G NIKYD 
Sbjct: 405 AENR--------AYYVPVPAEREE--------VLKIVNEFRPLFENEKSMKVGQNIKYDM 448

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS-RKSSI 528
           ++L  YG+ ++G   D ML  YVL      H++  +A+ +L Y      E++ +  K+  
Sbjct: 449 IILQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGARGKNQK 507

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +E  G+
Sbjct: 508 NMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIEMPLVPVLVNIESNGV 567

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
            +D + LKQ S   +  L  +E+ IY+++GE FN+SS KQ+G++LF KLK      KTKT
Sbjct: 568 LLDTEALKQSSQHFTVRLQEIEKEIYEMAGETFNISSAKQVGEVLFDKLKIVEKAKKTKT 627

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+  T++++ Q     + II  ILE+R L K+ STY D+LP  IN RT R+HT ++ A 
Sbjct: 628 GQY-VTSEEVLQSYRSKHDIIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAV 686

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   +
Sbjct: 687 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNM 746

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F +  DIH   AA+I+ ++I  V+  MRR AKT NF IIYGIS F LA ++ + R E
Sbjct: 747 IDAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVSRQE 806

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF  +P + EY++K+    R+NGYVETIF R+    +INS    +R   ER A
Sbjct: 807 AKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNGVVRGYAERNA 866

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI + AM  +++  + + L  KM+LQ+HDEL F VPE E     +I++  
Sbjct: 867 INAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKELVQKIVIEE 926

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME+A     ++ VPLK +    NNW + +
Sbjct: 927 MEQA----YHMHVPLKADCGWGNNWLQAH 951


>gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
 gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
          Length = 913

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/988 (35%), Positives = 532/988 (53%), Gaps = 90/988 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTT-STGKPTGAVKGVLNMLLSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+E++ +YKANRP +P+ L  Q+  +  + +A G+P + ++G EADD+I 
Sbjct: 57  VVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+   ++D++ V +K+G+ PE ++  
Sbjct: 117 TLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRIKQ------KKRRENILE 235
            AL GD +DNIPG+PG+G KTA  LL   G   E +  +  ++ +      K     + E
Sbjct: 177 LALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + + ++ L   +     LI+  + LE               
Sbjct: 237 NREQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELE--------------- 281

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                          K      L +      + +    +  E  
Sbjct: 282 ------------------------------FKNWLDDLLREAKEAGENGEAETPIQAE-- 309

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +++      W++KLE     +F   T ++DA  ++ + ++ +  +
Sbjct: 310 ----------VDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQVVGVSFAVKE 359

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   E+   LK+G + KYD  V
Sbjct: 360 G-EAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409

Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           L      I++RG   D ML SYVLDS  + HD+ S+A K+L +     ++I       + 
Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            D+I+  Q   +A E+++V L+L   L  KL     L  V   ++ P++ V++++E  G 
Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D +LL   S E+ + +++LE   YDL+G++FNL SPKQLG IL+ KL  P  +KT TG
Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q  T    L ++   D  + K I+++R +SK+KSTY D LP  IN RT R+HT Y  A  
Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSYHQAVA 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK   L 
Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ + R EA
Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI RYF R+PG+  Y+E+T+    + G+VET+FGRR++  EI+S   ++R   ER AI
Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AADI +RAM++V   L++  L  +++LQ+HDELV EV E+ +    + I   M
Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVCEGIRPLM 889

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A      L VPL V   V +NW E +
Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDEAH 913


>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
 gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
          Length = 920

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/983 (36%), Positives = 524/983 (53%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 11  EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+E+Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 66  CVFDAKGKTFRDELYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLVS    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 126 TLAREAERRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDY 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 186 LALIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKG-VVGDNLRRALDFLPL 244

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            RKLV + T   +   LE     L  +      L        F   +  V +        
Sbjct: 245 GRKLVTVETACDLAPHLESIDASLKSDGEARDLLRDIFARYGFKTWLREVDS-------- 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       +     +   + + + +  TP++         
Sbjct: 297 -------------------------APAEGGGADAPDGEPAPVIAVDTPRE--------- 322

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I   +    W  KLE     +F   T  +D   ++ + ++ +    K 
Sbjct: 323 ---------YETIQTWEQFDAWFAKLEAAELTAFDTETTALDPMVARLVGLSFAVEPGK- 372

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+          +     ++L+ LK + E+    K+G ++KYD  VL  
Sbjct: 373 AAYLPVAHRGPDMP---------EQLPLDDVLARLKSWLESPDRKKVGQHLKYDAQVLAN 423

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI + G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 424 YGIELNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME  G+ ID  
Sbjct: 483 LAQAAEYAAEDADITLQLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDA 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+  S EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 543 RLQAQSNEIATRLVDLEAQAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 603 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 662 ASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 722 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 782 RYFARYPGVAQYMEDTRATAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   KLA++M++Q+HDELV EVP++E++   + +   M     
Sbjct: 842 GTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA- 900

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 901 ---KLKVPLVAEVGAGANWEEAH 920


>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
 gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
          Length = 920

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/983 (35%), Positives = 524/983 (53%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 11  EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 66  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLVS    L +T+  E +D + V+ K+G+PPE++V  
Sbjct: 126 TLAREAERRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDY 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N+    +   L
Sbjct: 186 LALIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKG-VVGDNLRRALDFLPL 244

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            RKLV + T   +   LE     L  +      L        F   +  V +        
Sbjct: 245 GRKLVTVETACDLAPHLESIDASLKSDGEARDLLRDIFARYGFKTWLREVDS-------- 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                       +     +   + + + +  TP++         
Sbjct: 297 -------------------------APAEGGGADAPDGEPAPVIAVDTPRE--------- 322

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I   +    W  KLE     +F   T  +D   ++ + ++ +    K 
Sbjct: 323 ---------YETIQTWEQFDAWFAKLEAAELTAFDTETTALDPMVARLVGLSFAVEPGK- 372

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+          +     ++L+ LK + E+    K+G ++KYD  VL  
Sbjct: 373 AAYLPVAHRGPDMP---------EQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLAN 423

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI + G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 424 YGIELNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME  G+ ID  
Sbjct: 483 LAQAAEYAAEDADITLQLHCALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDA 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+  S EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 543 RLQAQSNEIAMRLVDLEAQAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 603 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 662 ASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 722 GEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 782 RYFARYPGVAQYMEDTRASAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   KLA++M++Q+HDELV EVP++E++   + +   M     
Sbjct: 842 GTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA- 900

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 901 ---KLKVPLVAEVGAGANWEEAH 920


>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
 gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
          Length = 917

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/976 (36%), Positives = 540/976 (55%), Gaps = 66/976 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            HL L+DG ++++RAF+A         G P NA+ G+  ML  +L    KE   +H AV 
Sbjct: 2   PHLVLIDGPNYVFRAFHAVRHNLTNSKGEPTNAVFGYVQMLRSIL----KELGPTHVAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN +Y DYKA+RP +PE L  Q P +   T AF +  I ++ +EADD+IAT 
Sbjct: 58  FDPKGGTFRNRMYADYKAHRPPMPEDLAAQWPSIFDVTDAFRLNRICVEDYEADDVIATL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AE  G+ V+I+STDKDLMQLV     + DT+K +    E V ++WG+ P+++  L A
Sbjct: 118 ARQAEARGWDVSIVSTDKDLMQLVGERIWMLDTMKRKDYGPEEVKERWGVGPDRIQDLLA 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PGIG KTA  LL+ YG+LE +L  A  IKQ+KRREN++E+A+ ARLS 
Sbjct: 178 LAGDSADNIPGVPGIGPKTAVTLLEAYGDLEGVLTRAGEIKQQKRRENLIEFADDARLSY 237

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV L   VP+ I L+ L + + +  RL      LEF +++   +               
Sbjct: 238 RLVALDEQVPLPIELDDLAVTEPDRERLAELFTRLEFRRMLAEFSG-------------- 283

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                             + I++   PQ    E ++  +   + 
Sbjct: 284 ---------------------------------PAAIDTPVVPQAKPAEPVRTSTPATVT 310

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                 + +   +Q  + +L +    +    T ++ A  ++ + ++ +T    +     V
Sbjct: 311 PRIDRLVNDETTLQSLLAELSSAELIALDTETTSLQAHDAELVGLSFATRAG-EAWYIPV 369

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                DL V        +    + +L+ LK   E+    K GHN+KYD  VL R GI + 
Sbjct: 370 GHRSTDLLVP-----APQQLPLQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRAGIELA 424

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G   D ML++Y L   +    + S+A+ +L+Y      E+       +  D++  S    
Sbjct: 425 GIAADSMLLAYCLYPAKYPPSLDSVAEDYLNYHCTPYSEVAGKGAKQVCFDEVPVSIATP 484

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E++++ L+L  LL  +L+ E  L  ++ ++ P+  V++ +E TG  +D ++L  +S 
Sbjct: 485 YACEDADIALRLTGLLSAQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAGLST 544

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
                +  LE  I+  +GEKFN+ SPKQLG +LF  L  P G KTK+GQW T  + LE++
Sbjct: 545 GFGLRIAELESQIHAAAGEKFNIQSPKQLGVLLFETLAIPGGKKTKSGQWATGQEVLEKL 604

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++ + + IL+ RQL+K+KSTY D+LP  I++ T RVHT ++ A T TGRL+S +PNL
Sbjct: 605 -ADEHEVPRLILQVRQLAKLKSTYTDALPKLIHRTTGRVHTSFNQAITTTGRLSSSDPNL 663

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI++  G++IR+AFI+     L++ADYSQIELR++AH +    L   F N  DIH  
Sbjct: 664 QNIPIRSAEGREIRKAFIAEEGHTLLAADYSQIELRLMAHFSGDAALCAAFANGEDIHAA 723

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AA + G+ +E VS +MRR AK INF I+YG+S F LA QL I R EA  +I  YF R+P
Sbjct: 724 TAAAVNGIALEDVSGEMRRRAKAINFGILYGMSAFGLAKQLNISRGEAQTFIDTYFERYP 783

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            +  +++ T    R+ GYVET+ G R++  EI+S     R   ER AINAP+QGSAADI 
Sbjct: 784 SVRGFMDDTLVLAREQGYVETLLGHRVYVPEISSSNGMRRAYAERTAINAPLQGSAADII 843

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI +H+ L     A  ++LQ+HDEL+ E P ++I   S I+  +ME+A    + L V
Sbjct: 844 KVAMIHLHRRLRQEAPAAAIILQVHDELIVEAPVDQIDAVSAIMRQTMEQA----VTLEV 899

Query: 961 PLKVNIKVSNNWQEEN 976
           PL V+I   ++W + +
Sbjct: 900 PLTVDIGSGHSWYDAH 915


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/989 (34%), Positives = 537/989 (54%), Gaps = 51/989 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 8   MNSIDKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 63

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 64  HIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEADD 123

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E +  E V  K+ I  
Sbjct: 124 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDRVFMYRPKHTGGFEVMGTEEVKTKFNIQT 183

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            E+++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 184 TEQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVET 242

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++TDVPI + ++ L+ E+ N   L    + LEF  LI+RV      +
Sbjct: 243 NREMITFSKFLATIKTDVPIQLDMDSLVREEPNEEELRKIFEELEFRTLIDRVLKKGSGN 302

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTT--IKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           +++  P     +       A       + +  I+   F++ + + + ++     +   L 
Sbjct: 303 SSSPTPTSPVPDLFAGTLFAQPQTSTPENSAPIQGDLFANFAGEGTGVS-----ENSNLT 357

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           RL+ L      +  Y  I       + +QKL T    S    T   +   ++ + ++ S 
Sbjct: 358 RLEML------DIDYQLIDTEDKRAEIIQKLLTSEILSIDTETTGTEPMDAELVGMSFSD 411

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + +          ++ +     +          +I++  +  FENE  +K+G NIKYD 
Sbjct: 412 AENR--------AYYVPVPAEREE--------VLKIVNEFRPLFENEKSMKVGQNIKYDM 455

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS-RKSSI 528
           ++L  YG+ ++G   D ML  YVL      H++  +A+ +L Y      E++ +  K+  
Sbjct: 456 IILQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGARGKNQK 514

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +E  G+
Sbjct: 515 NMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIEMPLVPVLVNIESNGV 574

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
            +D + LKQ S   +  L  +E+ IY+++GE FN+SS KQ+G++LF KLK      KTKT
Sbjct: 575 LLDTEALKQSSQHFTVRLQEIEKEIYEMAGETFNISSAKQVGEVLFDKLKIVEKAKKTKT 634

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+  T++++ Q     + II  ILE+R L K+ STY D+LP  IN RT R+HT ++ A 
Sbjct: 635 GQY-VTSEEVLQSYRSKHDIIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAV 693

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   +
Sbjct: 694 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNM 753

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F +  DIH   AA+I+ ++I  V+  MRR AKT NF IIYGIS F LA ++ + R E
Sbjct: 754 IDAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVSRQE 813

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF  +P + EY++K+    R+NGYVETIF R+    +INS    +R   ER A
Sbjct: 814 AKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNGVVRGYAERNA 873

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI + AM  +++  + + L  KM+LQ+HDEL F VPE E     +I++  
Sbjct: 874 INAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKELVQKIVIEE 933

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME+A      + VPLK +    NNW + +
Sbjct: 934 MEQA----YRMYVPLKADCGWGNNWLQAH 958


>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
 gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
          Length = 944

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/979 (38%), Positives = 567/979 (57%), Gaps = 53/979 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++ HL L+DGS FI+RAF+A P +S    G+PVNA+ GF NML +LL+    + + +H A
Sbjct: 14  EKPHLVLIDGSGFIFRAFHALPPMS-SPQGVPVNAVYGFTNMLARLLR----DHVGTHLA 68

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD    TFRNEIYP YKA+RP+ PE L PQ  L+R AT AF +P+IE+ G+EADD++A
Sbjct: 69  VIFDAGRTTFRNEIYPQYKAHRPEAPEDLRPQFGLIRDATAAFNVPSIELAGWEADDLLA 128

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            Y   A + G   TIIS+DKDLMQLV P   L D +K++ I    V  K+G+ P+++V +
Sbjct: 129 AYAKAAVEAGGCCTIISSDKDLMQLVRPGVELMDPMKQKPIREAEVEAKFGVRPDQVVDV 188

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS DN+PG+PGIG K AA L+ EYG LE IL  A  +K  KRR+N++E+A+ AR+
Sbjct: 189 QALMGDSTDNVPGVPGIGPKGAAQLVNEYGTLEQILAAAPAMKASKRRDNLIEHADAARM 248

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV+L  + P+  P+  L   +     L  +L+ + F   I R+              
Sbjct: 249 SRRLVLLDDNAPMPQPISELGCREPVRETLRDWLEEMGFHSTIQRMGL------------ 296

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                     G+A +        ++    ++  D+ + +     P               
Sbjct: 297 ----------GLAAKPRPFMRQIVRPEDKAAARDEVAAVTIPDAP--------------- 331

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT-S 421
                Y  + +   + +W+      G  +    TD+++A  +  + +++S    K     
Sbjct: 332 --YGPYETVTDMDALDRWIADARAAGVMAVDTETDSLNARQANMVGLSLSVAPGKACYVP 389

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F  ETI   L   ++ ++  +     E L  LK   ++   LK+  N KYD  V    GI
Sbjct: 390 FLHETIRDLLEEDSTGEAFVRQLDRTEALERLKPLLQDASVLKVFQNAKYDLTVFRGAGI 449

Query: 482 -SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
             +   +D ML+SY   +G     +  +++  L +T      +  + +  IP  +++   
Sbjct: 450 PEITPIDDTMLISYAQSAGEHGQGMDELSELHLGHTPVTYDSVTGTGRKRIPFAQVAIEA 509

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E+++V L+LW +LRP+L   + L +YE +++P+I +++ ME  GI++D   L++
Sbjct: 510 ATAYAAEDADVTLRLWQVLRPQLRTRQALALYEEIERPLIQILTDMEDVGIKVDATELRR 569

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +SA+ ++ + ++E+ I++  G  FN+ SPKQLG+ILF ++  P G +TK+G W T +  L
Sbjct: 570 MSADFAERMGTIEQEIHEQVGRSFNVGSPKQLGEILFDEMGLPGGKRTKSGSWGTDSGVL 629

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    + + + IL WRQL+K+KSTYAD+L   +++ TQRVHT + +A T TGRL+S E
Sbjct: 630 ESLAEQGHELPQKILAWRQLAKLKSTYADALVQQMDQDTQRVHTSFQMAITTTGRLSSNE 689

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G +IR+AF++ P   L+SADYSQIELR+LAH+AKI PL + F    DI
Sbjct: 690 PNLQNIPIRTEEGARIRKAFVATPGCVLLSADYSQIELRLLAHVAKIEPLLEAFRLGQDI 749

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+E+FG+ +E + P  RR AK INF IIYGIS F LA QL+I   EA  YI  YF 
Sbjct: 750 HARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAFGLAQQLQISPGEARSYIDAYFA 809

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PGI  Y+E+TK   +++GYV T FGRR +   I     + R   ER AINAP+QG AA
Sbjct: 810 RYPGIRAYMERTKEEAKKHGYVTTPFGRRCYVPGITEKNGARRAYAERQAINAPLQGGAA 869

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAM+ + + L    L  KM+LQ+HDEL+FEV E++    +  +   ME A      
Sbjct: 870 DIIKRAMVHLARRLPATGLKAKMVLQVHDELLFEVEEQDAKALADFVRTEMEGAA----K 925

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L V L+V   +  +W + +
Sbjct: 926 LDVALEVETGIGPSWADAH 944


>gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
 gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
          Length = 924

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/994 (34%), Positives = 522/994 (52%), Gaps = 88/994 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M ++  L LVDGSS++YRAF+A P L R   G P      AI G  NML  L    RKE 
Sbjct: 1   MSEKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPASPPTGAIRGMINMLQSL----RKEV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A + A +FD    TFR+ +YP+YKA R  +P+ L  Q+  +    +  G   +++ G E
Sbjct: 56  TADYAACVFDAKGPTFRDALYPEYKAQRAPMPDDLRAQIEPIHQVVRLMGWAVLDVPGVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T    A  +G  V I S DKDL QLV+    + DT+  ++ D+  V  ++G+PP
Sbjct: 116 ADDVIGTLAVAAAAQGVEVFISSGDKDLSQLVNEHIVIVDTMNGKRRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             MV  Q L GD++DN+PG+  +G KTAA  L EYG+L+ ++  ++ IK     EN+ + 
Sbjct: 176 ALMVDYQTLVGDAVDNVPGVDKVGPKTAAKWLTEYGSLDALVARSAEIKGA-AGENLRKA 234

Query: 237 AETARLSRKLVMLRTDVPITI------PLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            +     R+L+ ++TD  +         L+ + + + +   L +F +   F         
Sbjct: 235 LDWLPTGRQLLTIKTDCDLNGWVPGLPALDAVRVGEPDNAALKTFYEQYGF--------- 285

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                                KG+A             ++   L D+ + +         
Sbjct: 286 ---------------------KGLAKALADKASAAASAAEAPGLFDEPAPV--------- 315

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                       I   +Y  I++ +    W+ +++     +    T ++D   ++ + I+
Sbjct: 316 ---------TPSITQVAYDTILDWEAFNTWLARIDAAELVALDTETTSLDEMVAEIVGIS 366

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S     +     +   + D      +D         E+L+ LK + EN    K+G ++K
Sbjct: 367 FSVTPG-EAAYIPLMHDYPDAPAQLPRD---------EVLAKLKGWLENPAKKKLGQHVK 416

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKS 526
           YD+ V   +GI ++G+  D ML SYVL+  +  H +AS+A++ L       +++      
Sbjct: 417 YDRHVFANHGIEVQGYVHDTMLQSYVLEVHK-PHGLASLAERHLGRKGINYEDLCGKGAK 475

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL----LHVYERLDKPMIDVVSQ 582
            IP  ++S  +  E++ E+S+  L +   L P+L  +      L     L+    + + +
Sbjct: 476 QIPFSQVSIDKAAEYSCEDSDQTLDVHRTLWPRLEKDAQEGGKLRFIYELEIASSETLYR 535

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G+ ID   L Q S E+ + +L LE+  Y+L+G+ FNL SPKQ+G+I F KL  P  
Sbjct: 536 IERNGVLIDAPTLAQQSHELGQRILQLEQEAYELAGQPFNLGSPKQIGEIFFGKLGLPIV 595

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT TG   T  + LE++   D P+   ILE R LSK+K TY D L       T RVHT 
Sbjct: 596 KKTATGAPSTDEEVLEKL-ADDYPLPAKILEHRGLSKLKGTYTDKLAQMALPGTGRVHTH 654

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y+ A  +TGRL+S +PNLQNIPI+T  G+++R AFI+PP   + SADYSQIELRI+AH++
Sbjct: 655 YAQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAPPGCLIASADYSQIELRIMAHLS 714

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L   F + +D+HR  A+E+FGV    V+ + RR+AKTINF +IYG+S + LA  L 
Sbjct: 715 GDAALLLAFHDGMDVHRATASEVFGVPTSAVTSEQRRYAKTINFGLIYGMSSYGLAKSLG 774

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I  + A +YI+RYF RF G+  Y+++T+   +  GYVET+FGRR++  EINSP    R  
Sbjct: 775 IDNTAAKNYIERYFDRFAGVKRYMDETRASAKAKGYVETVFGRRLYLPEINSPNGPRRGG 834

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ERAAINAP+QG+AAD+ + +M +V + L+     TKM++Q+HDELVFEVPE E+    +
Sbjct: 835 AERAAINAPMQGTAADLIKLSMNAVQRVLDAEGRKTKMIMQVHDELVFEVPENEVDWLKR 894

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +   M         LRVPL   + V  NW + +
Sbjct: 895 EVPKLMAGVA----QLRVPLLAEVGVGVNWDKAH 924


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/990 (34%), Positives = 536/990 (54%), Gaps = 52/990 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MNSTDKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A K+G    +++ DKD  QLVS    +Y        E + IE +  K+ I  
Sbjct: 117 VIGTLATEAGKQGITTYMMTPDKDYGQLVSDNVFMYRPKHSGGFEVMGIEEIKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            E+++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 TEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVAEFGSIENLLAHTDQLKGA-LKTKVEA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + +  L+ E+ N   L    + LEF  LINRV    D  
Sbjct: 236 NREMITFSKFLATIKVDVPIKLDMNTLVREEPNEEELRKIFEELEFRTLINRVLKKTDAP 295

Query: 296 AANIEPVVLDINTTE--NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
             +                        + +  ++   F++ +      +     +K  L 
Sbjct: 296 LPSSSNSAAPDPYAGTLFAQPTGSATPENNGPVQGDLFANFAG-----DGTDGAKKSNLT 350

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           RL+ L      +  Y  I   +  ++ +QKL T    S    T   +   ++ + ++ S 
Sbjct: 351 RLEML------DVDYQLIDTEEKRKEIIQKLLTTEILSIDTETTGTEPMEAELVGMSFSD 404

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + +          ++ +  +  +          +I++ L+  +ENE+ +K+G NIKYD 
Sbjct: 405 AENR--------AYYVPVPANRDE--------ALKIVNELRPLYENENSMKVGQNIKYDM 448

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS-RKSSI 528
           +VL  YG+ ++G   D ML  YVL      H++  +A+ +L Y      E++ +  K+  
Sbjct: 449 IVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLQYQTIHIDELIGARGKNQK 507

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +E  G+
Sbjct: 508 NMRDLPAEDVYRYACEDADVTLKLKNVLEKELKEQSAEHLFYEIEMPLVPVLVNIESNGV 567

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKF-PSGAKTK 646
           +ID + L+Q S   +  L  +E+ IY L+G E FN++SPKQ+G++LF +LK      KTK
Sbjct: 568 RIDTEALRQSSEHFTLRLQEIEKEIYALAGGETFNIASPKQVGEVLFDRLKIVDKAKKTK 627

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN RT R+HT ++ A
Sbjct: 628 TGQYVTSEEVLESLRS-KHAIIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQA 686

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   
Sbjct: 687 VTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKN 746

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           +   F +  DIH   AA+I+ V+I  V+  MRR AKT NF IIYGIS F LA ++ +PR 
Sbjct: 747 MIDAFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVFGLAERMNVPRQ 806

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA + I  YF  +P + EY++++    R+NGYVETIF R+    +INS  + +R   ER 
Sbjct: 807 EAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERN 866

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM  + + L+ + L  KM+LQ+HDEL F VPE E     +I++ 
Sbjct: 867 AINAPIQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHDELNFSVPEAEKEIIQKIVIE 926

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME+A      + VPLK +     NW E +
Sbjct: 927 EMERA----YRMLVPLKADCGWGKNWLEAH 952


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/977 (35%), Positives = 541/977 (55%), Gaps = 63/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAFHALPPLTT-STGLHTNAIRGAISAIQKLMRRTQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+E+ P YK +RP +P  L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHELSPIYKGDRPSMPTELSEQIPYLHALIRALGIPLHTLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AE  G  V I + DKD+ QLV+    L D+ KE+ +D++ V +K+G+ P +++    
Sbjct: 117 AKRAEAMGHQVLISTGDKDMAQLVTEKVTLEDSFKEKPLDVDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG++  IL N  +IK  K  +NI E+ +   L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGSIGGILENVDKIKG-KVGQNIKEHVDGIALDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+ +    + L L + N   L      LEF   +  +    + + +N +    
Sbjct: 236 QLASIVIDLDLNFGYDDLKLGEPNVETLRHLYTELEFRNQLQSLDHPNNPNNSNYQQAAK 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            IN                                   +   P+ L        S   + 
Sbjct: 296 SIN---------------------------------AKAVTAPEPLEDHASVTSSDDQLG 322

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  +++ +D     ++L T    +F   T ++D   ++ +  +++   Q        
Sbjct: 323 QATYHTVLSQQDWDTLFERLSTEKRFAFDTETTSLDYRIAQIVGFSVAFDAQ-------- 374

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++ L+     +   +    + IL+ +K   E+E   KIGH++KYD  VL  +GI + 
Sbjct: 375 NAYYVPLAHDY--EGAPEQLNREVILAQIKPILEDESVKKIGHHLKYDAHVLENHGIHLA 432

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL+S  + H +  +A+ +LS+   T +++          ++I       
Sbjct: 433 GWYFDTMLASYVLNSVATRHGMDDVARLYLSHLTTTYEQVAGKGAKQKTFNQIPLETAAH 492

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L+++   ++ P+  V++QME  GI++D   L Q+ 
Sbjct: 493 YAAEDAHVTYRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLG 552

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E S  + +LE  I +++GE FN+SSPKQ+G++LF KL    G KT TGQ+ T+   LE+
Sbjct: 553 GEFSNTMQNLENQIMEIAGESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEK 612

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++PI + ILE+R LSK+KSTY D L    N  T RVHT Y  A T TGRL+S +PN
Sbjct: 613 I---EHPIAQLILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPN 669

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+ ++G++IR+AF++P  + L++ADYSQIELR++AH+++   L   F +  D+HR
Sbjct: 670 LQNIPIRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEALLDAFIHGQDVHR 729

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ +E V+   RR AK +NF ++YG+S F L  QL   R E+ DYIK+YFHR+
Sbjct: 730 RTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQDYIKQYFHRY 789

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI++Y+++T+    + G+VET+ GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 790 PGIYDYMQRTRQVALEQGFVETLLGRRLYTPDIDARNMMVRKAAERAAINAPLQGSAADI 849

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   KMLLQ+HDELVFEV E+     +  +   M+      + + 
Sbjct: 850 IKMAMIEVDKMLPKDQ--AKMLLQVHDELVFEVDEDIADELAPKLAEVMQSV----LQIS 903

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW E +
Sbjct: 904 VPLVVEVGKGKNWDEAH 920


>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
          Length = 917

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/983 (36%), Positives = 519/983 (52%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 123 TLAREAERHGMKVVVSTGDKDLAQLVTDRVTLVNTMTNEILDRDGVIAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LALIGDTVDNVPGVEKCGPKTAVKWLTQYDSLDGVIEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            RKLV + T   +   LE     L  +      L        F   +  + +  +     
Sbjct: 242 GRKLVTVETACDLAPHLESIEATLATDGEARDLLRDIFARYGFKTWLREIDSALEESGGA 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P                                        + E  P        +  
Sbjct: 302 DAP----------------------------------------DGEPAPVVTAGAVRE-- 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I        W  K++     +F   T ++D   ++ + ++ S    K 
Sbjct: 320 ---------YDTIQTWAQFDAWFAKIDAAALTAFDTETTSLDPMTARLVGLSFSVEPGK- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     DL          +     E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 370 AAYLPVAHRGPDLP---------EQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI + G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YGIELSGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 480 LAQAAEYAAEDADITLQLHHALYPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDA 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+  S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 RLQAQSTEIATRLVELEAQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPETGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F N
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIASPGHQIVSADYSQIELRIMAHISGDASLLRAFSN 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVTADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFARYPGVAQYMEDTRAIAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L    LA++M++Q+HDELV EVPE E+    + +   M     
Sbjct: 839 GTAADLIKLSMIAVDDWLTRDGLASRMIMQVHDELVLEVPEAELPRVREKLPEMMCGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGANWEEAH 917


>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
 gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
          Length = 914

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/982 (35%), Positives = 530/982 (53%), Gaps = 78/982 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L R  +G P  A+ G  NML +L    R +  A++ A 
Sbjct: 2   QNTLLLVDGSSYLYRAFHALPDL-RNKEGAPTGALYGIINMLRRL----RSDFPAAYIAC 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++Y +YKA R  +PE L  Q+  +  A +A G P I ++G EADD+I T
Sbjct: 57  VFDAKGKTFRDDLYAEYKAQRASMPEDLARQVEPIHEAVRAMGWPLIMVEGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G    I + DKDL QLV+    L +T+  E++D + V+ K+G+PPE++V   
Sbjct: 117 LAVDAVRHGMKAVISTGDKDLAQLVNDDVMLINTMSNERLDRDGVLAKFGVPPERIVDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTA   L +YG L+ I+ NA+ I      EN+ +  +    +
Sbjct: 177 TLIGDTVDNVPGVSKVGPKTAVKWLTQYGTLDGIVENAANI-GGAVGENLRKALDWLPQA 235

Query: 244 RKLVMLRTDVPITIP----LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           + L+ ++TD  +        E L+ ++ +  ++I       F   +              
Sbjct: 236 KVLITVKTDCDLVDHMVSIPESLMAKEQDPAKMIDLYARFGFKTWLRE------------ 283

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                          A   E    T       S L D  +                    
Sbjct: 284 -------------ATAASAEEVIATAAPADAQSGLFDAPAAP------------------ 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I+   D+ +W+  ++     S    T ++    ++ + I++        
Sbjct: 313 ----AEQRYDTILTEADLDRWLAIIDAAALTSIDTETTSLVPLQAQLVGISLCCEPGV-A 367

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V   + D  V  S++          +L  ++ + E+    K+G N+KYD  +   +
Sbjct: 368 AYIPVAHRYADAPVQLSREL---------VLGKMQAWLEDPAKAKVGQNLKYDSHIFANH 418

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISD 535
           GI++RG   D ML SYV +S RS HD+ S+A + L     T +E+     S I  D++  
Sbjct: 419 GITLRGIAHDTMLESYVFESHRS-HDMDSLALRHLGRTTITFQEVCGKGASQICFDQVDI 477

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           ++  E+A E++++ LQL   + P++   E LL VYE+++ P   V+ ++E  G+ ID  +
Sbjct: 478 ARATEYAAEDADITLQLHQAMLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTGI 537

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+  S E+ K +L +E + Y+L+G+ FNL+SPKQ+G+I F KL+ P   KT +G   T  
Sbjct: 538 LQVQSHELGKRMLEIETSAYELAGQPFNLNSPKQIGEIFFEKLQLPVVKKTPSGAPSTDE 597

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L ++   D P+ K +LE+R LSK+KSTY D LP  I+  T RVHT Y+    +TGRLA
Sbjct: 598 EVLAKL-AEDYPLPKVLLEYRSLSKLKSTYTDKLPKMIDPTTGRVHTNYAQTVAVTGRLA 656

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPI+T  G++IR AF++P    ++SADYSQIELRI+AH++    + + F + 
Sbjct: 657 SNEPNLQNIPIRTAEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDANMLRAFADG 716

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIHR  AAEIF      V+ + RR+AK INF +IYG+S F LA  L I R  A  YI +
Sbjct: 717 IDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMSAFGLAGNLGIERGAAQSYIDK 776

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +++++T+   + +GYVET+FGRR+   EINSP    R   ERAAINAP+QG
Sbjct: 777 YFARFSGVKQFMDETRLKAKAHGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPMQG 836

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + +M++V   LE   L + M++Q+HDELV EVP+EE+      +   M      
Sbjct: 837 TAADLIKLSMVAVQGWLETDGLKSLMVMQVHDELVLEVPQEELELVRVKLPALMAGVA-- 894

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L+VPL   + +  NW E +
Sbjct: 895 --ELKVPLTAEVGIGKNWDEAH 914


>gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY]
 gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
          Length = 922

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/990 (35%), Positives = 520/990 (52%), Gaps = 82/990 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDG----LPVNAIAGFCNMLWKLLQNSRKES 56
           M +   L LVDGSS++YRAF+A P L R   G     P  AI G  NML  L    +KE 
Sbjct: 1   MTRPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASAPTGAIRGMINMLQAL----KKEV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A + A +FD    TFR+ +YP+YK +R  +P+ L  Q+  +    +  G P + I G E
Sbjct: 56  PADYAACVFDASGPTFRDALYPEYKQHRAPMPDDLRAQIEPIHEVVRLLGWPVLCIPGVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T    A  +G  V I S DKDL QLV+    + DT+  +K D+  V  ++G+PP
Sbjct: 116 ADDVIGTLAATAAGQGMQVVISSGDKDLSQLVNEHITIIDTMNGKKRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             MV  QAL GD++DN+PG+P +G KTAA  L EYG+L+ +L NA  IK     EN+   
Sbjct: 176 TLMVDYQALVGDAVDNVPGVPKVGPKTAAKWLTEYGSLDALLANAGAIKG-VAGENLRGA 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVAT 290
            +    +R LV ++TD  +   L+ L   D           L  F +   F  L      
Sbjct: 235 LDWLPTARTLVTIKTDCDLAGHLDGLPAIDAIAVGAEQADVLRDFYQKYGFKSLAR---- 290

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                                   A+ + +  D       F++       + ++Q     
Sbjct: 291 ------------------------ALPSAVVPDAGASGDLFATPDASAVAVQAQQ----- 321

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                           +Y  I+  + +  W+ +L+    A+    T ++D   ++ + ++
Sbjct: 322 -------------REVTYDTILTWEQLDGWLARLKAAPLAALDTETTSLDELRAEIVGVS 368

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S               +I L+ H   D+  +  L  E+L  L+ + E+    K+G ++K
Sbjct: 369 FSVEPGA--------AAYIPLA-HNGPDAPPQLPLA-EVLERLRPWLEDPACPKLGQHVK 418

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKS 526
           YD+ V   +GI +RG+  D ML SYVL+  +  H + S+A++       + +++      
Sbjct: 419 YDRHVFANHGIQVRGYAHDTMLQSYVLEVHK-PHGLTSLAERHTGRTGISYEDLCGKGAK 477

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            IP  ++   +   ++ E+S+  L +  +L P+L  +  L     L+    + + ++E  
Sbjct: 478 QIPFAQVPVDKAAAYSCEDSDQTLDVHRVLWPQLQADDKLRGIYELEMACSETLFRIERN 537

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID   L   S  + + +L LE+  Y ++G+ FNL SPKQLG+I F KL  P   KT 
Sbjct: 538 GVLIDAGKLAAQSHALGQRILQLEQEAYAIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTA 597

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   T  + LE++   D P+   +LE R L K+K TY D L    + RT RVHT Y+ A
Sbjct: 598 TGARSTDEEVLEKL-AEDYPLPAKLLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYAQA 656

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRL+S EPNLQNIPI+T  G+++R AF++P  + + SADYSQIELRI+AHI+    
Sbjct: 657 VAVTGRLSSNEPNLQNIPIRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDEA 716

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F   LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+S F LA  L I   
Sbjct: 717 LLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETK 776

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            AA YI RYF R+PG+ +Y+E+TK   +  GYVET+FGRR++  EINSP    R   ERA
Sbjct: 777 AAAAYIDRYFQRYPGVKQYMEETKAQAKARGYVETVFGRRLYLPEINSPNGPRRGAAERA 836

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AAD+ ++AM++V   L+  K    M++Q+HDELVFE+PE E+    + I  
Sbjct: 837 AINAPMQGTAADLIKKAMVAVQGELDARKPEVLMIMQVHDELVFELPEGEVDWLRREIPR 896

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M         L+VPL   + V  +W + +
Sbjct: 897 LMAGVAA----LQVPLLAEVGVGPDWDKAH 922


>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
 gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
          Length = 922

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/990 (35%), Positives = 521/990 (52%), Gaps = 82/990 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M +   L LVDGSS++YRAF+A P L R   G P      AI G  NML  L    +KE 
Sbjct: 1   MTRPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASAPTGAIRGMINMLQAL----KKEV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A + A +FD    TFR+ +YP+YK +R  +P+ L  Q+  +    +  G P + I G E
Sbjct: 56  PADYAACVFDASGPTFRDALYPEYKQHRAPMPDDLRAQIEPIHEVVRLLGWPVLCIPGVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T    A  +G  V I S DKDL QLV+    + DT+  +K D+  V  ++G+PP
Sbjct: 116 ADDVIGTLAATAAGQGMQVVISSGDKDLSQLVNENITIIDTMNGKKRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             MV  QAL GD++DN+PG+P +G KTAA  L EYG+L+ +L NA  IK     EN+   
Sbjct: 176 TLMVDYQALVGDAVDNVPGVPKVGPKTAAKWLTEYGSLDALLANAGAIKG-VAGENLRGA 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVAT 290
            +    +R LV ++TD  +   L+ L   D           L  F +   F  L      
Sbjct: 235 LDWLPTARMLVTIKTDCDLAGHLDGLPAIDAIAVGAEQADALRDFYQKYGFKSLAR---- 290

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                                   A+ + +  D       F++       + ++Q     
Sbjct: 291 ------------------------ALPSAVVPDAGASGDLFATPDASAVAVQAQQ----- 321

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                           +Y  I+  + +  W+ +L+    A+    T ++D   ++ + ++
Sbjct: 322 -------------REVTYDTILTWEQLDGWLARLKAAPLAALDTETTSLDELRAEIVGVS 368

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S               +I L+ H   D+  +  L  E+L  L+ + E+    K+G ++K
Sbjct: 369 FSVEPGA--------AAYIPLA-HNGPDAPPQLPLA-EVLERLRPWLEDPACPKLGQHVK 418

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKS 526
           YD+ V   +GI +RG+  D ML SYVL+  +  H +AS+A++       + +++      
Sbjct: 419 YDRHVFANHGIQVRGYAHDTMLQSYVLEVHK-PHGLASLAERHTGRTGISYEDLCGKGAK 477

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            IP  ++   +   ++ E+S+  L +  +L P+L  +  L     L+    + + ++E  
Sbjct: 478 QIPFAQVPVDKAAAYSCEDSDQTLDVHRVLWPQLQADDKLRGIYELEMACSETLFRIERN 537

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID   L   S  + + +L LE+  Y ++G+ FNL SPKQLG+I F KL  P   KT 
Sbjct: 538 GVLIDAGKLAAQSHALGQRILQLEQEAYAIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTA 597

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   T  + LE++   D P+   +LE R L K+K TY D L    + RT RVHT Y+ A
Sbjct: 598 TGARSTDEEVLEKL-AEDYPLPAKLLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYAQA 656

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRL+S EPNLQNIPI+T  G+++R AF++P  + + SADYSQIELRI+AHI+    
Sbjct: 657 VAVTGRLSSNEPNLQNIPIRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDEA 716

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F   LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+S F LA  L I   
Sbjct: 717 LLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETK 776

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            AA YI RYF R+PG+ +Y+E+TK   +  GYVET+FGRR++  EINSP    R   ERA
Sbjct: 777 AAAAYIDRYFQRYPGVKQYMEETKARAKARGYVETVFGRRLYLPEINSPNGPRRGAAERA 836

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AAD+ ++AM++V   L+  K    M++Q+HDELVFE+PE E+    + I  
Sbjct: 837 AINAPMQGTAADLIKKAMVAVQGELDARKPEVLMIMQVHDELVFELPEGEVDWLRREIPR 896

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M         L+VPL   + V  +W + +
Sbjct: 897 LMAGVAA----LQVPLLAEVGVGPDWDKAH 922


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/983 (34%), Positives = 542/983 (55%), Gaps = 75/983 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    G+  +AI GF N L  +L+        +H AV 
Sbjct: 2   KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKREN----PTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD+I T 
Sbjct: 58  FDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIP-PEKMV 180
           +  AEKEGF V +++ DKD  QLVS    +Y        E I +  V+ K+G+   E+++
Sbjct: 118 SKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIIGVPEVLNKYGLTSTEQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K   +++ + E AE  
Sbjct: 178 DLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGA-QKKKVEENAEQI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R S+ L  ++TDVPI       + E  N  RL      LEF   IN++++         E
Sbjct: 237 RFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSS---------E 287

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV                +      ++   F+  + +     S + P+K  L  L+    
Sbjct: 288 PV----------------KAAPKGPVQGDLFAIFTPE-----STEEPEKSILTDLKSTPH 326

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y      +      + L      +F   TD +D   +  + ++ +  + +   
Sbjct: 327 ------NYYLTDTEEKQADLARFLLGQEFFAFDTETDGIDPLKAGLVGMSFAVKENE--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +  ++ +          +++       +N   LKIG NIK+D LVL +Y 
Sbjct: 378 -----AWYVPVPANSVE--------AAKVVERFSPALQNPKSLKIGQNIKFDILVLRKYN 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           + + G   D M+  Y+L+     H +  +A+ +L Y     +E++    K+ + +  +  
Sbjct: 425 VKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQLSMRNVPV 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            Q+ E+A E++++ L+L     P+L  E L  ++  ++ P+I V+++ME TG+ +D   L
Sbjct: 484 EQIAEYAAEDADITLKLKNYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTA 654
           +Q S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK      KTKTG + T+ 
Sbjct: 544 RQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A T TGRL+
Sbjct: 604 DVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQNIP++ DLG++IR+AFI         SADYSQIELRI+AH++    + + F++
Sbjct: 663 STNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQS 722

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F LA +L IPRSE+ + I 
Sbjct: 723 GADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRSESKELID 782

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER AINAPIQ
Sbjct: 783 GYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERNAINAPIQ 842

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ +++  E+  L +KM+LQ+HDEL F V +EE     +I++  ME    
Sbjct: 843 GSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEEVKKIVLEEMENVM- 901

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL  +     NW E +
Sbjct: 902 ---KLQVPLIADCGEGENWLEAH 921


>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
 gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
          Length = 944

 Score =  935 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/989 (34%), Positives = 527/989 (53%), Gaps = 61/989 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPV----NAIAGFCNMLWKLLQNSRKESI 57
             +  L LVDGSS++YRAF+A P L R + G P      AI G  NM+ KL    RK+  
Sbjct: 3   SDKKTLLLVDGSSYLYRAFHAMPDL-RANPGDPTSPATGAIRGMINMMQKL----RKDVR 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           A + A +FD    TFR+ +YP YKA R  +P+ L  Q+  +    +  G   +++ G EA
Sbjct: 58  ADYAACVFDAKGPTFRDALYPQYKAQRSPMPDDLRSQVEPIHEVVRLLGWKVLDVPGVEA 117

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+I T   +A K+G  V I S DKDL QLV     + DT+ + + D+  V  ++G+PP 
Sbjct: 118 DDVIGTLACLASKQGIEVIISSGDKDLSQLVDENITVIDTMNDRRRDLAGVEAEFGVPPR 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            MV  QAL GD++DN+PG+P +G KTA   L EYG+L+ ++  A  IK     +N+    
Sbjct: 178 LMVDYQALVGDAVDNVPGVPKVGPKTAVKWLLEYGSLDALVARAGEIKG-VVGDNLRLSL 236

Query: 238 ETARLSRKLVMLRTDVPITI------PLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           +     R+L+ ++ D  +         LE + +       L +F +   F  L+ ++   
Sbjct: 237 DWLPKGRELLTIKKDCDLIGYIDGLPALESIAIGGQQTDALKAFYEKYGFKGLVRQI--- 293

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D ++A  E ++        K            +       SL D      +        
Sbjct: 294 -DTESAPPE-LIGGPEGRHAKSPGSVGSAGSSASPGLFDEPSLPDAPLAGRA-------- 343

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                       +N  Y  I   + +  W+ K+E     +    T ++D   ++ + I+ 
Sbjct: 344 ------------SNLKYDTIFTWELLDSWLAKIEAAELVAVDTETTSLDEMLAQIVGISF 391

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S     +     +   + D      +D         E+L+ LK + EN    K+G ++KY
Sbjct: 392 SVTPG-EAAYIPLTHDYPDAPAQLPRD---------EVLARLKPWLENPAIAKLGQHVKY 441

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSS 527
           D+ V   +GI ++G+  D ML SYVL+  +  H +AS+A++ +       +++       
Sbjct: 442 DRHVFANHGIEVQGYAHDTMLQSYVLEVHK-PHGLASLAERHVGRSGINYEDLCGKGVHQ 500

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           I  +++  ++  E++ E+S+  L +  +L P++     L     L+    + + ++E  G
Sbjct: 501 IKFNQVDIAKAAEYSCEDSDQTLDVHRVLWPQIEANDKLRFVYELEMKSSETLYRIERNG 560

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID   L + S E+   ++ LE   ++L+G+ FNL SPKQ+G+I FTKL  P   KT +
Sbjct: 561 VLIDAPTLAKQSGELGARIVQLEAEAHELAGQPFNLGSPKQIGEIFFTKLGLPVVKKTPS 620

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   D P+   ILE R LSK+K TY D L    + RT RVHT Y+ A 
Sbjct: 621 GAPSTDEEVLEKL-AEDYPLPAKILEHRGLSKLKGTYTDKLAQLAHPRTGRVHTHYAQAV 679

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRL+S +PNLQNIP+KT  G+++R AF++P    + SADYSQIELRI+AH+++   L
Sbjct: 680 AVTGRLSSNDPNLQNIPVKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHLSEDEAL 739

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F   LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+S F LA  L I    
Sbjct: 740 LRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIETKA 799

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA YI RYF R+PG+  Y+++T+   +  GYVET+FGRR++  EINSP    R   ERAA
Sbjct: 800 AAAYIDRYFQRYPGVKHYMDETRLSAKSKGYVETVFGRRLYLPEINSPNGPRRGGAERAA 859

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AAD+ + +M+ V + L+  K ATKM++Q+HDELVFEVPE E+      I   
Sbjct: 860 INAPMQGTAADLIKLSMVKVQEVLDAEKRATKMIMQVHDELVFEVPEAEVEWVRVEIPRI 919

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M        +LRVPL   I V  NW + +
Sbjct: 920 MAGVA----DLRVPLLAEIGVGPNWDKAH 944


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score =  935 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/982 (35%), Positives = 531/982 (54%), Gaps = 66/982 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS-HFAV 63
             L LVDGSS++YRAF+A P L R   G P  AI G  NML +L  +   + I S   A 
Sbjct: 2   KRLLLVDGSSYLYRAFHAMPDL-RNRAGEPTGAIYGMVNMLRRLRADYNTDDITSNCIAC 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  TFR++IYP+YKANR  +PE L  Q+P +   T+A G P +   G EADD+I T
Sbjct: 61  VFDAPGKTFRDDIYPEYKANRASMPEDLAAQIPHIHEVTRAMGWPIVMEPGIEADDVIGT 120

Query: 124 YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              +A ++GF  V + + DKD+ QLV+    L DT+K   +  + V +K+G+ PE++V  
Sbjct: 121 LAQVALEQGFDEVIVSTGDKDMAQLVNDKVRLVDTMKNAVMTRDSVFEKFGVYPEQIVDY 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L GD++DN+PG+  +G KTAA  L EY  L+ ++ NA +I   K  EN+ +  +    
Sbjct: 181 LTLVGDTVDNVPGVEKVGPKTAAKWLAEYKTLDGVVANADKI-GGKVGENLQKALDWLPT 239

Query: 243 SRKLVMLRTDVPITIP---LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            + LV ++TD    +     E L     N   L    +  EF      +    + DA+  
Sbjct: 240 GKSLVTIKTDCEFELRRHIEEQLKANPENKDALKDLFQRFEFKTWFRALGGVGEDDASAK 299

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             V                    +     S  S     T  ++S +T       +L  L 
Sbjct: 300 PKV--------------------EGPPDGSSMSLFDAPTQAVDSIETICVQTQAQLDSLL 339

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                  +                       +F   TD+++  +++ + ++ S       
Sbjct: 340 AELKAAAASKT------------------PVAFDTETDSLEPMNARIVGLSFSVKPGVG- 380

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   +I L+      +        E+L++LK +FE+    KI  N KYD  V+  +
Sbjct: 381 -------YYIPLTHQDL--TAEPQLPLAEVLAFLKPWFEDSDSPKIAQNAKYDLHVMANH 431

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
            + ++G FED ML SY+L++ +  H + ++A +WL+Y     +E+     S I  D++  
Sbjct: 432 DVWVKGLFEDTMLASYILEAHK-PHGMDALALRWLNYNTIKYEEVAGKGASQITFDQVPI 490

Query: 536 SQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
               ++A E++ V L+L   L+ +L  V +L  +Y  ++ P   V+ ++E  G+ ID D 
Sbjct: 491 DTATKYAAEDAEVTLRLAHALKAELDKVPELAKLYRDVELPFGQVLFEVERNGVLIDSDK 550

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+  SAEI+  L  +EE  ++L+G  FNL+SPKQ+G++LF KL  P   KT +G   T  
Sbjct: 551 LEAQSAEIADKLKLIEEQAFELAGGSFNLNSPKQIGELLFDKLGLPVVKKTASGAPSTDE 610

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L ++   D P+   +LE R L+K+KSTY D LP  +N RT RVHT Y+ A  +TGRLA
Sbjct: 611 EVLSKL-AEDYPLPAKLLEHRSLAKLKSTYTDKLPRMVNARTGRVHTNYAQAVAVTGRLA 669

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G+++R AFI+ P   L+SADYSQIELRI+AHI+    L   F   
Sbjct: 670 SNDPNLQNIPVRTAEGRRVREAFIAAPGCVLVSADYSQIELRIMAHISGDEALIHAFNEG 729

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIH   A+EIFGV + +V+   RR AK INF +IYG+S F LA  L I R  A  YI R
Sbjct: 730 LDIHSATASEIFGVGLNEVTSDHRRTAKVINFGLIYGMSAFGLAGNLGITREAAKLYIDR 789

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+ ++++  +   +++G+V+T+FGRR+   EI SP    R   ERAAINAP+QG
Sbjct: 790 YFARYPGVAKFMDNVRAQAKEDGFVQTVFGRRLWLPEIKSPNGPRRAGAERAAINAPMQG 849

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           ++AD+ + AM+ +   L+  KL +KM++Q+HDE++FEVP+ E+    + +   M +    
Sbjct: 850 TSADLIKMAMVELSAWLKAEKLNSKMIMQVHDEVIFEVPKGELELIQKRVPEIMTQVA-- 907

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              LRVPL+V   V NNW+E +
Sbjct: 908 --KLRVPLEVGCGVGNNWEEAH 927


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
 gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
          Length = 952

 Score =  935 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/990 (34%), Positives = 531/990 (53%), Gaps = 52/990 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MNSTDKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAYKQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + IE +  K+ I  
Sbjct: 117 VIGTLATEAGRQGIVTYMMTPDKDYGQLVSENVFMYRPKHSGGFEVMGIEEIKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            E+++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  R+K    +  +  
Sbjct: 177 TEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVTEFGSIENLLAHTDRLKGA-LKTKVEA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + +  L+ E+ N   L    + LEF  LI+RV       
Sbjct: 236 NREMIAFSKFLATIKVDVPIKLDMNTLVREEPNEEELRKIFEELEFRTLIDRVLKKTGSP 295

Query: 296 AANIEPVVLDINTTE--NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
             +                     T    +  ++   F++ +D     N     +   L 
Sbjct: 296 LPSSSNSASPDPYAGTLFAQPTDGTTSGNNAPVQGDLFANFAD-----NGTGDAKNSILT 350

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           RL+        +  Y  I   +  ++ +QKL T    S    T   +   ++ + ++ S 
Sbjct: 351 RLEMF------DVDYQLIDTEEKRKKIIQKLLTKEILSIDTETTGTEPMEAELVGMSFSD 404

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +         +  ++ +  +  +          +I++  +  +ENE+ +K+G NIKYD 
Sbjct: 405 AEN--------QAYYVPVPANRDE--------ALKIVNEFRPLYENENSMKVGQNIKYDM 448

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSI 528
           +VL  YG+ ++G   D ML  YVL      H++  +A+ +L Y      E++    K+  
Sbjct: 449 IVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGAKGKNQK 507

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    V  +A E+++V L+L  +L  +L      H++  ++ P++ V+  +E  G+
Sbjct: 508 NMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEHAAEHLFYEIEMPLVPVLVNIESNGV 567

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKF-PSGAKTK 646
           +ID + LKQ S   +  L  +E+ IY L+G E FN+ SPKQ+G++LF +LK      KTK
Sbjct: 568 RIDTEALKQSSEHFTLRLQEIEKEIYALAGGETFNIGSPKQVGEVLFDRLKIVEKAKKTK 627

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN RT R+HT ++ A
Sbjct: 628 TGQYVTSEEVLESLR-NKHAIIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQA 686

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   
Sbjct: 687 VTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKN 746

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           +   F +  DIH   AA+I+ V+I  V+  MRR AKT NF IIYGIS F LA ++ +PR 
Sbjct: 747 MIDAFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVFGLAERMNVPRQ 806

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA + I  YF  +P + EY++++    R+NGYVETIF R+    +INS  + +R   ER 
Sbjct: 807 EAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERN 866

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM  +++ L+ + L  KM+LQ+HDEL F VPE E     +I++ 
Sbjct: 867 AINAPIQGSAADIIKVAMSLIYQRLQSNNLKAKMILQVHDELNFSVPEAEKEIIQKIVIE 926

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME+A      + VPLK +     NW E +
Sbjct: 927 EMERA----YRMLVPLKADFGWGKNWLEAH 952


>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
 gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
          Length = 912

 Score =  935 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/977 (35%), Positives = 545/977 (55%), Gaps = 71/977 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L R     P  AI G  NML +L +  R +      A +
Sbjct: 2   KTLLLVDGSSYLYRAFHALPDL-RNRLNEPTGAIYGVLNMLRRLHKEYRPDYS----ACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++IYP YKA+RP +PE L+ Q+  +    +A G P +  +G EADD+I T 
Sbjct: 57  FDAKGKTFRDDIYPQYKAHRPPMPEDLVCQIGPLYACIRAMGWPLLIEEGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A        I + DKD+ QLV P   L +T+  E +D   +++K+G+ P +++   A
Sbjct: 117 VERAIARQAQCVIATGDKDIAQLVRPGIWLVNTMNNESLDESGILQKFGVTPAQIIDFLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DNIPG+  +G KTA   L +YG L++++ +A  IK     EN+ +  +  ++SR
Sbjct: 177 LVGDSVDNIPGVEKVGPKTAVKWLDQYGTLDDLIAHADEIKG-VVGENLRKALDWLKVSR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           KL+ ++ DVP+ +  + L+    +  RL    + LEF   +  +                
Sbjct: 236 KLLTIKCDVPLAMDWQDLVAVPPDTARLTELYEHLEFRSWLREL---------------- 279

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                       +   +++   ++S  +++ D  S    E                   +
Sbjct: 280 -----------KQPGPEKNEKAESSVMAAIVDDPSVPEGEND-----------------D 311

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I+    +  W+ + E+    S    T +++   +K + ++              
Sbjct: 312 GRDYQIILTDAQLGDWLAQCESAELVSIDTETTSLNPMEAKLVGLSFCMELG-------- 363

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  +I L+ H            +++L  LK + E++  LKIG N+KYD+ V   +G+ + 
Sbjct: 364 QAAYIPLAHHYP--GVPSQLNREQVLQRLKPWLESDEKLKIGQNLKYDRHVFANHGVMLN 421

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G   D +L SYVL+S  S HD+ S+A + L        E+       I  +++   +   
Sbjct: 422 GIVHDTLLQSYVLESHLS-HDLDSLASRHLGIQTISYDEVTGKGAKRIGFEQVEIHRAGI 480

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L P +  +  L ++Y++++ P+++V+ ++E  G+ +D DLL+  S
Sbjct: 481 YAAEDADIPLRLHRVLYPVISQDAHLEYIYQQIEIPLLEVLFRIERNGVLLDTDLLRVQS 540

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+++ L++LE+  + L+G  FNL+S KQ+ +ILF + K P   KT  G   T  +   Q
Sbjct: 541 GELTQQLVALEQQAHSLAGHAFNLNSTKQIQEILFGQHKLPVIKKTPKGVPSTDEEV-LQ 599

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D P+ K +L++R L+K+KSTY D LP  +NK+T RVHT Y+ A  +TGRLAS +PN
Sbjct: 600 RLASDYPLPKVLLDYRGLAKLKSTYIDKLPQMVNKQTGRVHTHYAQAVAVTGRLASNDPN 659

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T  G++IR AFI+P    ++SADYSQIELRI+AHI+    L   F    DIHR
Sbjct: 660 LQNIPVRTPEGRRIREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLIHAFSEGQDIHR 719

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FGV +E+V+P+ RR+AK INF +IYG+S F LATQL I R+ A  +I RYF R+
Sbjct: 720 ATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMSEFGLATQLGIERTAARTFIDRYFARY 779

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +Y+++T+   +Q+GYVET+ GRR+   +I S + + +   ERAAINAP+QG+AADI
Sbjct: 780 PGVADYMQRTRELAKQHGYVETVLGRRLQLSDIRSNQRNRQMGAERAAINAPMQGTAADI 839

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMISVH+ L + +L +K+++Q+HDELV EV  +E+    + +   ME      + L 
Sbjct: 840 IKLAMISVHRWLAEAQLQSKLIMQVHDELVLEVLVDELPVIKENLPRLMENV----LKLD 895

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPLKV   +  NW + +
Sbjct: 896 VPLKVQTGIGKNWDQAH 912


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
          Length = 932

 Score =  935 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/987 (33%), Positives = 520/987 (52%), Gaps = 74/987 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            +   LFL+D  + IYRA+YA     R    G   +AI GF N L  +L+        +H
Sbjct: 8   TRMEKLFLLDAYALIYRAYYALIKSPRINSKGFNTSAILGFVNTLEDVLKKEN----PTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD    TFR+E YP+YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+
Sbjct: 64  IGIAFDPAGPTFRHEAYPEYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A K G    +++ DKD  QLV     +Y         E + +E V  K+ I  
Sbjct: 124 IGTLATEAGKRGITTYMMTPDKDYGQLVGENVFMYRPRHNDKAFEVMGVEEVKNKYAIQS 183

Query: 177 E-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++ L  L GD+ DNIPG PG+G KTA  L+ ++GN+EN+L +  ++K    R  + E
Sbjct: 184 PLQVIDLLGLMGDASDNIPGCPGVGEKTAQKLIAQFGNIENLLAHTDQLKGA-LRTKVEE 242

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +    SR L  ++TDVP+ + ++ L  E  +   L    + LEF  L+ R+      +
Sbjct: 243 NRKQIEFSRFLATIKTDVPLPLDMDALKRESPDEEELRKIFQELEFRTLLERIFKEKPKE 302

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                P   D+                                       TP+       
Sbjct: 303 TPAATPGQGDLFGFF-----------------------------------TPETTSEPEK 327

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L+     N +Y  + N + + Q +Q + T    S    T + D   ++ + ++ S  +
Sbjct: 328 TNLATLHTLNCNYQLVDNEEKLSQLLQNIVTQSVLSLDTETTSTDPIRAELVGMSFSYAE 387

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  ++ +    S+         ++I+   +  FEN   +K+G NIKYD LV
Sbjct: 388 N--------QAFYVPVPADRSE--------AQKIVDRFRPVFENREIMKVGQNIKYDMLV 431

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG+ ++G   D M+  YVL      H++  +A+ +L+Y     +E++    K+   +
Sbjct: 432 LANYGVQLQGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLNYQTIHIEELIGPKGKNQGNM 490

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +  + V E+A E+++V L+L   L  +L    +  ++E ++ P+I V++ ME  G++I
Sbjct: 491 RDLPPASVYEYACEDADVTLKLKNKLEKELDENNVRKLFEEIEMPLIPVLAYMERNGVRI 550

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LK+ S   +  +  +EE +Y L+G +FN++SPKQ+G++LF +LK      KTKTGQ
Sbjct: 551 DTEALKETSRHFTLRMKQIEEEVYQLAGTEFNIASPKQVGEVLFDRLKIVEKAKKTKTGQ 610

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +  G + ++  ILE R L K+  TY D+LP  IN  T R+HT ++   T 
Sbjct: 611 YVTSEEVLESLR-GKHEVVGKILEHRGLKKLLGTYIDALPQLINPETGRIHTSFNQTVTA 669

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH++    + +
Sbjct: 670 TGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIE 729

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   DIH   A++I+ V +E+V+ + R  AKT NF IIYGIS F LA +L + R EA 
Sbjct: 730 AFQKGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIYGISVFGLAERLNVDRKEAK 789

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +P + EY++++    R+ GY+ETIF R+ +  +INS  + +R   ER AIN
Sbjct: 790 ELIDGYFENYPHVKEYMDESIRIARERGYIETIFKRKRYLPDINSRNAVVRGYAERNAIN 849

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM+ +++     ++ +KM+LQ+HDEL F V  EE     QI++  ME
Sbjct: 850 APIQGSAADIIKVAMVRIYQRFLKERIQSKMILQVHDELNFSVLPEEQEKVKQIVIEEME 909

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      ++ PL  +     NW E +
Sbjct: 910 SA----YKMKAPLLADSGWGQNWLEAH 932


>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
 gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
          Length = 906

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/975 (34%), Positives = 512/975 (52%), Gaps = 77/975 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRAF+A P L R   G P  AI G  NML +L  + + E      AV+FD
Sbjct: 4   LLLVDGSSYLYRAFHALPDL-RNKAGEPTGAIYGVLNMLRRLESDYKAEYK----AVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP+YKA+RP +P+ L+ Q+  +  A +A G P + + G EADD+I T   
Sbjct: 59  AKGKTFRDDWYPEYKAHRPPMPDDLVQQIEPLHAAIKAAGWPLLMVDGVEADDVIGTLAT 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  +G    I + DKDL QLVS     Y+T+  E +D   V  K+G+PP K+V   AL 
Sbjct: 119 NATADGIETLISTGDKDLTQLVSSHVRWYNTMSNELLDEAGVEAKFGVPPGKIVDYLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++D +PG+   G KTA   L +YG+L+ ++ +A+ I      +N+ ++     L ++L
Sbjct: 179 GDTVDGVPGVAKCGPKTALKWLAQYGSLDEVVAHANEI-GGVVGQNLRDHLGFLPLGKRL 237

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V +  D+        L     +   L                                  
Sbjct: 238 VTVACDLSNLPAPSTLTTTARDTATLRELYTRY--------------------------- 270

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                                  QF +   +     +        +      +       
Sbjct: 271 -----------------------QFRTWLGEIDGPEAAAAVPAREVSETPAAAPTAAIAV 307

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  +++      W+ K+E     +    T ++D+F ++ + I++S    +         
Sbjct: 308 HYETVLSWPQFDAWLAKIEAAELTALDTETTSLDSFAARIVGISLSVTPGE--------A 359

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            +I L+   +          +E+L+ LK + E+    K+  N KYD+ V   +GI++ G 
Sbjct: 360 CYIPLAH--TAPGVADQLPREEVLARLKSWLESAAHKKVLQNAKYDQHVFANHGIALSGI 417

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHA 542
             D ML SYV++S +  HD+  +  + L       +++       I  D++   +   +A
Sbjct: 418 AHDTMLQSYVIESDKG-HDLGQLCTRHLGLATIAYEDLCGKGAKQITFDQVDIERAATYA 476

Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            E+S+V L++  +L P+   E  L  +Y  ++ P   V+ Q+E  GI ID D+L + S E
Sbjct: 477 AEDSDVTLRVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHE 536

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + + +++LE   Y+L+G+ FNL+SPKQL DILF K   P   KT +G   T  + L ++ 
Sbjct: 537 MGQKIMALEAQAYELAGQPFNLASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELA 596

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+ K +LE R LSK+K TY D LP  +N +T RVHT +S A+ +TGRLAS +PNLQ
Sbjct: 597 L-DYPLPKLLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFSQAAVVTGRLASSDPNLQ 655

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++++ G+KIR AFI+P    ++SADYSQIELRI+AH++    L   F +  D+H+  
Sbjct: 656 NIPVRSEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFAHGEDVHKAT 715

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A EIFGV   +V P  RR AK+INF +IYG+S F LA QL + RS A  YI RYF R+PG
Sbjct: 716 AGEIFGVTPLEVGPDQRRVAKSINFGLIYGMSAFGLARQLGLERSAAQTYIDRYFARYPG 775

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  Y+E+ +   RQ+GYVET FGRR+ + +I S   + R   ERAAINAP+QG+AAD+ +
Sbjct: 776 VARYMEEARESARQHGYVETAFGRRLWFPDIRSSNGNRRQGAERAAINAPMQGTAADLIK 835

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V   LE   L ++++LQ+HDEL+ EVP+ E+      +   M +       L+VP
Sbjct: 836 LAMIAVQNWLEKSALKSRLILQVHDELLLEVPDGELMDVRTHLPRLMGQVA----ELKVP 891

Query: 962 LKVNIKVSNNWQEEN 976
           L V + V  NW+  +
Sbjct: 892 LVVEVGVGPNWEAAH 906


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/983 (34%), Positives = 536/983 (54%), Gaps = 75/983 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    G+  +AI GF N L  +L+        +H AV 
Sbjct: 2   KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKREN----PTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD+I T 
Sbjct: 58  FDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIP-PEKMV 180
           +  AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+   E+++
Sbjct: 118 SKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K   +++ + E AE  
Sbjct: 178 DLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGA-QKKKVEENAEQI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R S+ L  ++TDVPI       + E  N  RL      LEF   IN+++ +    AA   
Sbjct: 237 RFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLS-SEPVKAAPKG 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV  D+                                    +  TP+     +   L+ 
Sbjct: 296 PVQGDL-----------------------------------FAIFTPESTEEPKKSILTD 320

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y      +      + L      +F   TD +D   +  + ++ +  + +   
Sbjct: 321 LKSTPHNYYLTDTEEKQADLARFLLGQEFFAFDTETDGIDPLKAGLVGMSFAVKENE--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +  ++ +          +++       +N   LKIG NIK+D LVL +Y 
Sbjct: 378 -----AWYVPVPANSVE--------AAKVVERFSPALQNPKSLKIGQNIKFDILVLRKYN 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           + + G   D M+  Y+L+     H +  +A+ +L Y     +E++    K+ + +  +  
Sbjct: 425 VKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQLSMRNVPV 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            Q+ E+A E+++V L+L     P+L  E L  ++  ++ P+I V+ +ME TG+ +D   L
Sbjct: 484 EQIAEYAAEDADVTLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTA 654
           KQ S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK      KTKTG + T+ 
Sbjct: 544 KQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A T TGRL+
Sbjct: 604 DVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQNIP++ DLG++IR+AFI         SADYSQIELRI+AH++    + + F++
Sbjct: 663 STNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQS 722

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F LA +L IPRSE+ + I 
Sbjct: 723 GADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRSESKELID 782

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER AINAPIQ
Sbjct: 783 GYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERNAINAPIQ 842

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ +++  E+  L +KM+LQ+HDEL F V +EE     +I++  ME    
Sbjct: 843 GSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEEVKKIVLEEMENVM- 901

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL  +     NW E +
Sbjct: 902 ---KLQVPLIADCGEGENWLEAH 921


>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
 gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
          Length = 922

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/983 (35%), Positives = 521/983 (53%), Gaps = 85/983 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL    K+   SH AV+F
Sbjct: 13  PLILVDGSSYLYRAYHAPPHLTNSR-GEPTGAVYGVVNMLRSLL----KQYGPSHMAVVF 67

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+EIY +YKA+RP +P+ L  Q+  +    +A G+P I I G EADD+I T  
Sbjct: 68  DAKGKTFRDEIYAEYKAHRPPMPDDLRCQIEPLHAIIRALGLPLICISGVEADDVIGTLA 127

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             AE EG  V I + DKD+ QLV+    L +T+ +  +D+E V  K+G+ PE ++ L A+
Sbjct: 128 QQAEAEGHDVLISTGDKDMAQLVTDKITLINTMTDTVMDVEGVHNKFGVGPELIIDLLAM 187

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAET 239
            GD +DNIPG+PG+G KTA  +LQ  G+LE I  +   +        K   + + E+ E 
Sbjct: 188 MGDKVDNIPGLPGVGEKTALAMLQGIGSLEAIYQDVDAVAALGFRGAKTMPKKLAEHKEA 247

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS  L  ++TDV +      L++ + +   L      LEF + +N V      D   I
Sbjct: 248 AFLSYTLATIKTDVELDQKPSELLIGEADRDALAKLYGDLEFRRWLNEV-----LDGGAI 302

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P     N    K  A                                            
Sbjct: 303 LPAGNGDNGASAKAPAQ------------------------------------------- 319

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               N   +  I+    +  W++KL      +    T ++D   ++ + ++ +    K  
Sbjct: 320 ----NGTEHELILTESQLDTWIEKLSQAELFAIDTETTSIDYMAAELVGLSFAVEAGKG- 374

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V   +    V   +D+         +L+ LK   E+    K+G N+KYD  VL +Y
Sbjct: 375 AYLPVAHDYEGAPVQLDRDT---------VLAKLKPLLEDTAPRKVGQNLKYDMSVLAKY 425

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535
           GI++ G   D ML SY  +S    H++  +A K+L +     ++I          ++I  
Sbjct: 426 GIALNGIAFDTMLESYCFNSTAGRHNMDDMALKYLGHKTIHFEDIAGKGAKQKTFNQIPL 485

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            +   +A E++++ L+L   L P+L        V+E+L++P++ ++S ME  G+ ID D 
Sbjct: 486 EEAAPYAAEDADITLRLHQHLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQ 545

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L Q S+EI+  L SLE+  ++++GE FNL S KQL  I F KL +P   KT  G    TA
Sbjct: 546 LHQQSSEIATTLDSLEQQAHEIAGEVFNLGSTKQLQAIFFDKLGYPVLKKTPKGAPS-TA 604

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +++ Q    D P+ K ILE R L+K+K+TY D LP  +     RVHT Y  A T TGRL+
Sbjct: 605 EEVLQELALDYPLPKIILEHRSLAKLKNTYTDKLPQLVKPSG-RVHTSYHQAVTATGRLS 663

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T  G++IR+AFI+P   KL++ DYSQIELRI+AH+++   L + F   
Sbjct: 664 SSDPNLQNIPIRTAEGRRIRQAFIAPEGYKLLAIDYSQIELRIMAHLSQDKGLLEAFAAG 723

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH+  AAE+FGV+ + V+ + RR AK +NF +IYG+S F LA QL I R+EA +YI R
Sbjct: 724 KDIHKATAAEVFGVDFDSVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIGRAEAQEYIDR 783

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YFHR+PG+ EY+++T+       YVET+ GRR+H  EIN+     +   ER AINAP+QG
Sbjct: 784 YFHRYPGVLEYMDRTRAQAHDKEYVETLMGRRLHLPEINARNKMRQQAAERTAINAPMQG 843

Query: 895 SAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           +AADI ++AM+ V   L +  +    +++Q+HDELVFEV E         +   M +A  
Sbjct: 844 TAADIIKKAMLLVADYLSQQAEDEIHLIMQVHDELVFEVREGVAEQHKDALCELMSQAA- 902

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL     + +NW + +
Sbjct: 903 ---ELDVPLLAEGGLGDNWDQAH 922


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/977 (35%), Positives = 542/977 (55%), Gaps = 63/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAFHALPPLTT-STGLHTNAIRGAISAIQKLMRRTQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+E+ P YK +RP +P  L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHELSPIYKGDRPSMPTELSEQIPYLHALIRALGIPLHTLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AE  G  V I + DKD+ QLV+    L D+ KE+ +D++ V +K+G+ P +++    
Sbjct: 117 AKRAEAMGHQVLISTGDKDMAQLVTEKVTLEDSFKEKPLDVDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG++  IL N  +IK  K  +NI E+ +   L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGSIGGILENVDKIKG-KVGQNIKEHVDGIALDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+ +    + L L + N   L      LEF   +  +    + + +N +    
Sbjct: 236 QLASIVIDLDLNFGYDDLKLGEPNIETLRHLYTELEFRNQLQSLDHPNNPNNSNYQQAAK 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            IN                                   +   P+ L        S   + 
Sbjct: 296 SIN---------------------------------AKAVTAPEPLEDHASVTSSDDQLG 322

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  ++N +D     ++L T    +F   T ++D   ++ +  +++   Q        
Sbjct: 323 QATYHTVLNQQDWDTLFERLSTEKRFAFDTETTSLDYRIAQIVGFSVAFDAQ-------- 374

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++ L+     +   +    + IL+ +K   E+E   KIGH++KYD  VL  +GI + 
Sbjct: 375 DAYYVPLAHDY--EGAPEQLNREVILAQIKPILEDESVKKIGHHLKYDAHVLENHGIHLA 432

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL S  + H +  +A+ +LS+   T +++          ++I       
Sbjct: 433 GWYFDTMLASYVLYSVATRHGMDDVARLYLSHLTTTYEQVAGRGAKQKTFNQIPLETAAH 492

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L+++   ++ P+  V++QME  GI++D   L Q+ 
Sbjct: 493 YAAEDAHVTYRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLG 552

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E S  + +LE  I +++GE FN+SSPKQ+G++LF KL    G KT TGQ+ T+   LE+
Sbjct: 553 GEFSNTMQNLENQIMEIAGESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEK 612

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++PI + ILE+R LSK+KSTY D L    N  T RVHT Y  A T TGRL+S +PN
Sbjct: 613 I---EHPIAQLILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPN 669

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+ ++G++IR+AF++P  + L++ADYSQIELR++AH+++   L   F +  D+HR
Sbjct: 670 LQNIPIRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEALLDAFIHGQDVHR 729

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ +E+V+   RR AK +NF ++YG+S F L  QL   R E+ DYIK+YFHR+
Sbjct: 730 RTAAEVLGIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQDYIKQYFHRY 789

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI++Y+++T+    + G+VET+ GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 790 PGIYDYMQRTRQVALEQGFVETLLGRRLYTPDIDARNMMVRKAAERAAINAPLQGSAADI 849

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   KMLLQ+HDELVFEV E+     +  +   M+      + + 
Sbjct: 850 IKMAMIEVDKMLPKDQ--AKMLLQVHDELVFEVDEDIADELAPKLAEVMQSV----LQIS 903

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW E +
Sbjct: 904 VPLVVEVGKGKNWDEAH 920


>gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 922

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/994 (35%), Positives = 525/994 (52%), Gaps = 93/994 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    RK+   S FA
Sbjct: 2   SQAPLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+ +Y +YKANRP +P+ +  Q+  +  + +A G P + +   EADD+I 
Sbjct: 57  VVFDAKGGTFRDALYAEYKANRPSMPDDMRVQIEPLHASVKALGFPLLCVDNVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE+++  
Sbjct: 117 TLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVAPEQIIDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQE-YGNLENILINASRI------KQKKRRENILE 235
            AL GDS DNIPG+PGIG KTA+ LL    G L  +      +        K     + E
Sbjct: 177 LALMGDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVATLPIRGAKTLAAKLEE 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + E A LS +L  ++TDVP+ + L+ L +   +  +L      LEF              
Sbjct: 237 HKEMALLSYELATIKTDVPLDVGLDDLQMGTPDHEKLAELYTLLEFKSW----------- 285

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               E    D      + + +  E                                    
Sbjct: 286 ---FEENQRDAKRAGQEIVEVAEE------------------------------------ 306

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
               Q       Y  I++      W+ KL+     +F   T+  DA HS+ + ++ +   
Sbjct: 307 ----QPGAAEAKYEVILDQAHFDAWLAKLDKAPLFAFVTETNGGDAQHSQLVGLSFAVAP 362

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     +   ++ +     +D+         +L  LK   EN + LK+G + K++  +
Sbjct: 363 -YEAAYIPLTHSYMGVPEQLDRDT---------VLKALKPLLENPNKLKVGQHAKFETNI 412

Query: 476 LHRY--------GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKS 523
           L           GI ++G   D ML SYVLDS  + HD+ S+A K+L       ++I   
Sbjct: 413 LANCAIGGDQNNGILVQGIAFDTMLESYVLDSTATRHDMDSLALKYLGQSKTDFQDIAGK 472

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQ 582
               +  D+IS      +A E+++V  +L   L+ KL     L  V   ++ P++ V+++
Sbjct: 473 GVKQLTFDQISLELAGPYAAEDADVTFRLHQALQEKLAATPSLGTVLNDIEMPLMPVLAR 532

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G  +D +LL   S E+ + L++LE   + ++GE+FNL SPKQLG IL+ KL  P  
Sbjct: 533 IERQGALVDANLLGVQSVELGEKLVALEREAFAIAGEEFNLGSPKQLGVILYEKLGLPVL 592

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           +KT  GQ  T    L ++   D P+ K ++++R LSK+KSTY D LP  IN RT RVHT 
Sbjct: 593 SKTAKGQASTAEAVLAELAEQDYPLPKVLMQYRSLSKLKSTYTDRLPEQINSRTGRVHTN 652

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A   TGRL+S++PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A
Sbjct: 653 YQQAVAATGRLSSIDPNLQNIPIRTSEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 712

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K   L   F ++LD+HR  AAE+FGV +E V+   RR AK INF +IYG+S F LA Q+ 
Sbjct: 713 KDEGLLYAFRHNLDVHRATAAEVFGVELEAVTLDQRRSAKAINFGLIYGMSAFGLAKQIG 772

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           + R ++  YI RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   ++R  
Sbjct: 773 VDRKQSQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPALRKG 832

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI ++AM++V + L    L  K++LQ+HDELV EV E+ +     
Sbjct: 833 AERTAINAPMQGTAADIIKKAMVAVDRWLTTSGLDAKVILQVHDELVLEVREDLVDQVRD 892

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            I   M  A      L VPL V + V NNW E +
Sbjct: 893 EIRQHMSAAA----TLDVPLLVEVGVGNNWDEAH 922


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/988 (34%), Positives = 538/988 (54%), Gaps = 75/988 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M K   LFL+D  + IYR++YA     R    G+  +AI GF N L  +L+        +
Sbjct: 1   MLKVMKLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKREN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD
Sbjct: 57  HIAVAFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIP- 175
           +I T +  AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+  
Sbjct: 117 VIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            E+++ L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K   +++ + E
Sbjct: 177 TEQVIDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGA-QKKKVEE 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E  R S+ L  ++TDVPI       + E  N  RL      LEF   IN+++ +    
Sbjct: 236 NVEQIRFSKFLATIKTDVPIGFDAARCVREKPNEERLTEIYTELEFRTFINKLS-SEPVK 294

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           AA   PV  D+                                    +  TP+     + 
Sbjct: 295 AAPKGPVQGDL-----------------------------------FAIFTPESTEEPKK 319

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L+       +Y      +      + L      +F   TD +D   +  + ++ +  +
Sbjct: 320 SILTDLKSTPHNYYLTDTEEKQADLARFLLGQEFFAFDTETDGIDPLKAGLVGMSFAVKE 379

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +  ++ +          +++       +N   LKIG NIK+D LV
Sbjct: 380 NE--------AWYVPVPANSVE--------AAKVVERFSPALQNPKSLKIGQNIKFDILV 423

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L +Y + + G   D M+  Y+L+     H +  +A+ +L Y     +E++    K+ + +
Sbjct: 424 LRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQLSM 482

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +   Q+ E+A E+++V L+L     P+L  E L  ++  ++ P+I V+++ME TG+ +
Sbjct: 483 RNVPVEQIAEYAAEDADVTLKLKNYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGVTL 542

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQ 649
           D   LKQ S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK      KTKTG 
Sbjct: 543 DTVALKQSSGELTASMNKLEQEVYELAGAEFNINSTKQVGEILFDRLKLDEKAKKTKTGG 602

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+   LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A T 
Sbjct: 603 YSTSEDVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTS 661

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIP++ DLG++IR+AFI         SADYSQIELRI+AH++    + 
Sbjct: 662 TGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMI 721

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F++  DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F LA +L IPRSE+
Sbjct: 722 EAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRSES 781

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER AI
Sbjct: 782 KELIDGYFSTYPRIKEYMEESVKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERNAI 841

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AM+ +++  E+  L +KM+LQ+HDEL F V +EE     +I++  M
Sbjct: 842 NAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEVVKKIVLEEM 901

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E        L+VPL  +     NW E +
Sbjct: 902 ENVM----KLQVPLIADCGEGENWLEAH 925


>gi|162149305|ref|YP_001603766.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
          Length = 943

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/987 (38%), Positives = 544/987 (55%), Gaps = 67/987 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL LVDGS FI+RAF+A P ++   DG PVNA+ GF NML +LL+    + + +H AVIF
Sbjct: 8   HLILVDGSGFIFRAFHALPPMT-APDGTPVNAVFGFTNMLARLLR----DHVGTHLAVIF 62

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D   VTFRN IY  YKA+RP+ PE L PQ  LVR AT AFG+P IE  G+EADD+IA Y 
Sbjct: 63  DAGRVTFRNGIYDQYKAHRPEPPEELRPQFALVRDATAAFGVPGIEEAGWEADDLIAAYA 122

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            +    G   T++S+DKDLMQL+ P   + D ++++ I  + V  K+G+ P+K++ +QAL
Sbjct: 123 RLVTDAGGRCTVVSSDKDLMQLIRPGVEMLDPIRQKPIGPKEVEAKFGVTPDKVIDVQAL 182

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG+PGIG KTA+ L+ EYG+L+ IL  A  +K  KRR++++E+AE ARLSR 
Sbjct: 183 IGDSVDNVPGVPGIGPKTASALIAEYGSLDAILDGAPAMKPSKRRDSLIEHAERARLSRV 242

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV LR D P  + LE LI  D +  +L  +L+++ F  L++R+                 
Sbjct: 243 LVTLREDAPCPLGLEDLICRDPDEVKLGEWLQSMGFRSLLHRMGMK-------------- 288

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                      E+             ++        + ++ P                  
Sbjct: 289 -----------ESAAAVGVASSAPAPAAAVAAAPTPSPDRAP-----------------Y 320

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  +     ++ WV +  T G  +    TD +D   +  + I+++    +        
Sbjct: 321 GPYETVRTAGALETWVAEARTAGFCAIDTETDGLDPLRAGLVGISLAVAPGRACYIPLAH 380

Query: 426 TI------------FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           T                     + D  G    T   L+ L     +   LKI  N K+D 
Sbjct: 381 TAEPPPPQLLPDLLLEPAPQDDAPDPVGPQLETGLALAILGPLLADASVLKIFQNAKFDL 440

Query: 474 LVLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
           LVL R G       +D ML+SY   +GR    +  +++ +L +      E+  + ++ +P
Sbjct: 441 LVLTRAGAPQPAPVDDTMLISYAQFAGRHGQGMDELSRLYLGHTPIPYDEVTGTGRNRVP 500

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             ++  ++   +A E+++V L+LWL LRP L +   L +YE L++P++ V++ ME  GI 
Sbjct: 501 FARVDVARATAYAAEDADVTLRLWLSLRPTLRIHHALALYEELERPLVAVLADMERAGIA 560

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID   L+++SA+ +  +  +E  I  L+G  FN+ SPKQLG+ILF ++  P G + K+G 
Sbjct: 561 IDVVELRRMSADFATRMAQMEAEIQALAGRSFNVGSPKQLGEILFDEMGLPGGKRMKSGA 620

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           W T +  L+ +    + +   IL WRQL+K+KSTYAD+L    +  T RVHT + +A T 
Sbjct: 621 WGTDSSVLQDLADQGHDLPGRILAWRQLAKLKSTYADALVKQADPDTARVHTSFQMAITS 680

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S EPNLQNIPI+T+ G +IRRAF++ P   L+SADYSQIELR+LAH+A I  L +
Sbjct: 681 TGRLSSNEPNLQNIPIRTEEGGRIRRAFVAAPGHVLLSADYSQIELRLLAHVADIPALRE 740

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   A+E+FG+ IE + P  RR AK INF IIYGIS F L  QL IP  EA 
Sbjct: 741 AFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAINFGIIYGISAFGLGRQLGIPPGEAR 800

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI  YF R+PGI  Y+E  K   +  GYV T FGRR     I    +  R   ER AIN
Sbjct: 801 AYIDAYFARYPGIRAYMETVKQEAKDQGYVTTPFGRRCWVPGIADRSAVRRAYAERQAIN 860

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG AADI +RAM+ +  +L    L  ++LLQ+HDEL+FEV   +    S ++   ME
Sbjct: 861 APLQGGAADIIKRAMVRLPHALASAGLDGRLLLQVHDELLFEVRAGQQDALSALVKQVME 920

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A     +L VPL V      NW + +
Sbjct: 921 SAA----SLSVPLVVETGTGANWADAH 943


>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 934

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/978 (35%), Positives = 537/978 (54%), Gaps = 53/978 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +G AVTI + DKD  QLV P   L +T+   ++D    V+ K+G+ PE++V L A
Sbjct: 117 LQGAADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVVAKFGVRPEQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGDNLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EPVV 303
            LV ++TDV +      L L + N   L        FT+ +  +       A  + EPV 
Sbjct: 236 ALVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPVA 295

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L       +    E    R T   +   ++  D    +++                    
Sbjct: 296 LGAAAATART---EPGRARGTGFVSGPVNAAVDLDPSLSA-------------------- 332

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+  +    W+ +L   G  +F   TD++D   +  I ++++           
Sbjct: 333 -PGQYDTILTQEQFDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPG------- 384

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +  ++    +             + L+ L     +    K+G + KYD  V+ R+G+ +
Sbjct: 385 -QAAYLPFGHNFP--GAPVQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVEL 441

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
            G+  D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS     
Sbjct: 442 AGYAEDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDAT 501

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L P+L  E  L  VY  ++ P++DV++++E  G+ +D   L++ 
Sbjct: 502 RYAAEDADITLRLHRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQ 561

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  
Sbjct: 562 SADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEAL 620

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +P
Sbjct: 621 EAIADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 680

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   FE+  D+H
Sbjct: 681 NLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 740

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R
Sbjct: 741 RATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 800

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AAD
Sbjct: 801 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 860

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAM++V   + DH    KM+LQ+HDELVFE   + + T    +   M  A      L
Sbjct: 861 IIKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMAGAA----EL 916

Query: 959 RVPLKVNIKVSNNWQEEN 976
           RVPL V+  V +NW + +
Sbjct: 917 RVPLVVDSGVGDNWDQAH 934


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/987 (35%), Positives = 534/987 (54%), Gaps = 45/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        S
Sbjct: 1   MNSTDKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PS 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPVIKDIIRAYRIPILEVSGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A K+G    +++ DKD  QLVS    +Y        E + IE V  K+ I  
Sbjct: 117 VIGTLATEAGKQGITTYMMTPDKDYGQLVSDNVFMYRPKHTGGFEVMGIEEVKAKFNIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++ +  L GDS DNIPG PG+G KTA  L+ E+ ++EN+L +  R+K    +  +  
Sbjct: 177 TAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFDSIENLLEHTDRLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPIT+ +  L+ E+ +  +L    + LEF  LI+RV       
Sbjct: 236 NREMIIFSKFLATIKIDVPITLDMNALVREEPDEEKLRKIFEELEFRTLIDRVLKKNSTP 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            ++              G     +    T  K      L    +  +   + +   L RL
Sbjct: 296 LSSSTSSSSPSTPDLFAGTLFAQQKSETTENKGPVQGDLFANFAG-DGADSSKNSNLTRL 354

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + L      +  Y  I      ++ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 355 EML------DVDYQLIDTEGKRRKLIQKLLTTEILSIDTETTGTEPMEAELVGMSFSDAE 408

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K          ++ +  +  +          +I++ L+  +ENE  LK+G NIKYD +V
Sbjct: 409 NKG--------YYVPVPPNREE--------ALKIINELRPLYENEKSLKVGQNIKYDMIV 452

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG+ +RG   D ML  YVL      H++  +A+ +L Y      E++    K+   +
Sbjct: 453 LQNYGVQVRGALFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGAKGKNQKNM 511

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V  +A E++++ L+L  +L  +L  +   H++  ++ P++ V+  +E  G+++
Sbjct: 512 RDLPAEDVYRYACEDADITLKLKNVLEKELKEQGAEHLFYEIEMPLVPVLVNIETNGMRL 571

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ S   +  L  +E+NIY+L+GE FN+ SPKQ+G++LF KLK      KTKTGQ
Sbjct: 572 DTEALKQSSEHFTVRLQEIEKNIYELAGETFNIGSPKQVGEVLFDKLKIVEKAKKTKTGQ 631

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +  G + +I  ILE+R L K+ STY D+LP  IN RT R+HT ++ A T 
Sbjct: 632 YVTSEEVLESLR-GKHAVIGKILEYRGLKKLLSTYIDALPQLINSRTGRIHTSFNQAVTS 690

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   +  
Sbjct: 691 TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMID 750

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  DIH   AA+I+ ++IE+V+  MRR AKT NF IIYGIS F LA +L + R EA 
Sbjct: 751 AFLSGHDIHAATAAKIYKIDIEEVTSDMRRKAKTANFGIIYGISVFGLAERLNVSRQEAK 810

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +P + EY++K+    R+NGYVETIF R+    +INS  + +R   ER AIN
Sbjct: 811 ELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 870

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++ +  +KL  KM+LQ+HDEL F VP  E     QI++  ME
Sbjct: 871 APIQGSAADIIKVAMAHIYQRITSNKLKAKMILQVHDELNFSVPASEKELVQQIVIEEME 930

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      + VPLK +    NNW E +
Sbjct: 931 HA----YRMHVPLKADCGWGNNWLEAH 953


>gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
 gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
          Length = 915

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/985 (33%), Positives = 529/985 (53%), Gaps = 84/985 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L LVDGSS++YRA++A P L R  DG P  A+ G   M+ +L    R++  A H  
Sbjct: 4   SRPTLLLVDGSSYLYRAYHALPDL-RSPDGFPTGALHGMVAMMKRL----REQVPAEHAV 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ Y DYKA+RP +PE L  Q+  +    +  G P +E+ G EADD I 
Sbjct: 59  CVFDAKGPTFRDDWYADYKAHRPSMPEPLAQQVAPIHEVVRLLGWPVLEVPGIEADDAIG 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   +A++ G  V + + DKDL QLV     L +T+  E +D   V+ K+G+PP+++V  
Sbjct: 119 TLACVAKRAGHRVVVSTGDKDLAQLVDEHVTLINTMSNETLDPAGVLAKFGVPPQRIVDY 178

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L GD++DNIPG+  +G KTA   + E+G+L+ ++  A+ IK     EN+    +    
Sbjct: 179 LTLVGDAVDNIPGVEKVGPKTAVKWITEHGSLDGVMAAAATIKG-VAGENLRRALDWLPQ 237

Query: 243 SRKLVMLRTDVPITIP------LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            R+LV +  D  +         L+ L L   +   L+ F +   F      +      D 
Sbjct: 238 GRRLVTVACDCDLAAHVPGWPALDALALRPADEAGLLDFYRRYGFKTWGRELEGQLGGD- 296

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                  +   T   T   ++  D   +                
Sbjct: 297 -----------------------VPAATATGTVSAAAAIDVARE---------------- 317

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +   + +  W+++L+     +    TD+++   ++ + I+ +    
Sbjct: 318 -----------YETVTTWERLDAWLERLQAAELVAIDTETDSLEPMKARIVGISFAVEPG 366

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++ L+ H   D+  +      +L+ LK + E+    K+G N+KYD+ V 
Sbjct: 367 RGA--------YVPLA-HAGPDAP-EQLPLDAVLARLKPWLEDASRAKLGQNLKYDRHVF 416

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
              GI++ G   D ML SYVL++ +  H + S+A++ L     + +++     + IP  +
Sbjct: 417 ANAGIALAGVRHDTMLESYVLEAHK-PHSLESLAERHLGRKGLSYEDLCGKGVNQIPFAQ 475

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  ++  E++ E+S + L +  +L P++  +  L  VYE ++ P+ +V++++E  G+ +D
Sbjct: 476 VDVARATEYSAEDSEMALHVHQVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLVD 535

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L + S ++++ +++LE+ +Y ++ + FNL SPKQ+G+ILF KL  P   +T +G   
Sbjct: 536 PQELARQSRDLAERMVALEQEVYAIAEQPFNLGSPKQIGEILFGKLGLPVKKRTASGAPS 595

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    L ++   D P+   ILE R L+K+K TY D LP  +N  T RVHT Y+ A  +TG
Sbjct: 596 TDEDVLTELAA-DYPLPARILEHRSLAKLKGTYTDKLPAMVNPATGRVHTNYAQAVAVTG 654

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RLAS EPNLQNIPI+T  G+++RRAF++PP   ++SADYSQIELRI+AHI++   L + F
Sbjct: 655 RLASNEPNLQNIPIRTPEGRRVRRAFVAPPGHVILSADYSQIELRIMAHISEDEGLLRAF 714

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              LD+HR  AAE+FG+ + +V+ + RR+AK INF +IYG+  + LA  L I +  A DY
Sbjct: 715 SEGLDVHRATAAEVFGMPLAEVTSEQRRYAKVINFGLIYGMGAYGLAANLGIEQKAAKDY 774

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF RF G+  Y+++T+   ++ GYVET+FGRR+   EINS     R+  ER AINAP
Sbjct: 775 IDRYFARFAGVKRYMDETRVRAKEKGYVETVFGRRLWLPEINSGNGPRRSGAERQAINAP 834

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+AAD+ + AMI+V K L+    AT+M++Q+HDELV EVPE E+  A   I   M   
Sbjct: 835 MQGTAADLIKLAMIAVQKELDASGRATRMVMQVHDELVLEVPEAELDWAKDAIPRLMAGV 894

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+VPL   + V  NW E +
Sbjct: 895 AA----LKVPLLAEVGVGANWDEAH 915


>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 934

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/978 (36%), Positives = 537/978 (54%), Gaps = 53/978 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +G AVTI + DKD  QLV P   L +T+   ++D    VI K+G+ PE++V L A
Sbjct: 117 LQGAADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPEQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGDNLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EPVV 303
            LV ++TDV +      L L + N   L        FT+ +  +       A  + EPV 
Sbjct: 236 TLVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPVA 295

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L       +    E    R T   +   ++  D    +++                    
Sbjct: 296 LGAAAATART---EPGRARGTGFVSGPVNAAVDLDPSLSA-------------------- 332

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++    +      
Sbjct: 333 -PGQYDTILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQ-AAYLP 390

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               F  + V              + L+ L     +    K+G + KYD  V+ R+G+ +
Sbjct: 391 FGHNFPGVPV---------QLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVEL 441

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS     
Sbjct: 442 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDAT 501

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L P+L  E  L  VY  ++ P++DV++++E  G+ +D   L++ 
Sbjct: 502 RYAAEDADITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQ 561

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  
Sbjct: 562 RADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEAL 620

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +P
Sbjct: 621 EAIADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 680

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   FE+  D+H
Sbjct: 681 NLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 740

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R
Sbjct: 741 RATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 800

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AAD
Sbjct: 801 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 860

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAM+ V   + DH    KM+LQ+HDELVFE   + + T    +   M  A      L
Sbjct: 861 IIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMAGAA----EL 916

Query: 959 RVPLKVNIKVSNNWQEEN 976
           RVPL V+  V +NW + +
Sbjct: 917 RVPLVVDSGVGDNWDQAH 934


>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 933

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/990 (34%), Positives = 527/990 (53%), Gaps = 85/990 (8%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  EN L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     
Sbjct: 15  MPKIAENPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYK----P 69

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           S  AV+FD    TFRN++Y +YKA+RP +P+ L  Q+  +    +A G+P + I G EAD
Sbjct: 70  SQMAVVFDAKGKTFRNDMYEEYKAHRPAMPDDLRSQIEPLHRIIRALGLPLVCIPGVEAD 129

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T +  A KEG AV I + DKD+ QLV     L +T+    +    V +K+G+ PE 
Sbjct: 130 DVIGTISTQASKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPSEVTEKFGVGPEL 189

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
           ++ L AL GD  DNIPG+PG+G KTA  +L   G+++ IL    ++ +      K     
Sbjct: 190 IIDLLALQGDKADNIPGLPGVGEKTALAMLTGAGSIDKILAAPEKMPELGFRGSKTMPAK 249

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + E+ +  +LS +L  ++ DV +    + L +   +   LI     +EF + +  V    
Sbjct: 250 LAEHGDMLKLSYELATIKLDVELEQDWKDLTIAPADKDELIKCYGEMEFKRWLAEVLDNR 309

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                                                  SS S QTS    E   Q +  
Sbjct: 310 SG-------------------------------------SSASTQTSTEEDELPKQDIKT 332

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E              Y+ I+   ++ +W+ KL      +    T +++   +K + ++ +
Sbjct: 333 E--------------YSTILTHDELDEWIDKLSKAELFAVDTETTSLNYMEAKLVGLSFA 378

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               K          ++ L+ H   D+  +     E L+ LK   EN    K+G N+KYD
Sbjct: 379 VEAGK--------AAYLPLA-HDYLDAP-QQLNQAEALAKLKPLLENPEIKKVGQNLKYD 428

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
             +L   GI ++G   D ML SYV +S  S H++  +A K+L +     +EI       +
Sbjct: 429 MSILANVGIKLQGIAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQL 488

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++IS      +A E++++ L+L   L P+L  E +L  ++  ++ P++ V+S ME  G
Sbjct: 489 TFNQISLEVAAPYAAEDADITLRLHQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQG 548

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  LL Q S E+++ +  LE+  Y+++GE FNLSSPKQL  + F KL +P   KT  
Sbjct: 549 VLIDSMLLGQQSEELARTIDELEQKAYEIAGESFNLSSPKQLQVLFFEKLGYPIIKKTPK 608

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G    TA+++      D P+ K IL+ R L+K+KSTY D LP  +N +T RVHT Y  A+
Sbjct: 609 GAPS-TAEEVLVELALDYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQAN 667

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S EPNLQNIPI+T+ G++IR AFI+   +K+++ADYSQIELRI+AH+++   L
Sbjct: 668 AATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGRKVLAADYSQIELRIMAHLSQDKGL 727

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH+  AAE+F V+  +V+ + RR AK +NF +IYG+S F LA QL IPR E
Sbjct: 728 LTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRGE 787

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+  Y+E+T+      GYV T++GRR++   I    +  R   ERAA
Sbjct: 788 AQKYIDTYFKRYPGVLNYMEETRAIAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAA 847

Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMI+V   +  +      +++Q+HDELVFEV  ++     + +  
Sbjct: 848 INAPMQGTAADIIKKAMINVADWIANETDGEITLIMQVHDELVFEVDSDKAEALQEKVCQ 907

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M +A     +L V L     + +NW++ +
Sbjct: 908 LMAEAA----DLDVELLAEAGLGDNWEQAH 933


>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 934

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/978 (35%), Positives = 539/978 (55%), Gaps = 53/978 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +G AVTI + DKD  QLV P   L +T+   ++D    V+ K+G+ PE++V L A
Sbjct: 117 LQGAADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVVAKFGVRPEQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGDNLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EPVV 303
            LV ++TDV +      L L + N   L        FT+ +  +       A  + EPV 
Sbjct: 236 ALVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPVA 295

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L       +    E    R T   +   ++  D    +++                    
Sbjct: 296 LGAAAATART---EPGRARGTGFVSGPVNAAVDLDPSLSA-------------------- 332

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I+  + +  W+ +L   G  +F   TD++D   +  I ++++           
Sbjct: 333 -PGQYDTILTQEQLDNWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPG------- 384

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +  ++    +             + L+ L     +    K+G + KYD  V+ R+G+ +
Sbjct: 385 -QAAYLPFGHNFP--GAPVQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVEL 441

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
            G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       IP  +IS     
Sbjct: 442 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDAT 501

Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++++ L+L  +L P+L  E  L  VY  ++ P++DV++++E  G+ +D   L++ 
Sbjct: 502 RYAAEDADITLRLHRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQ 561

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SA++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  
Sbjct: 562 SADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEAL 620

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +P
Sbjct: 621 EAIADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 680

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   FE+  D+H
Sbjct: 681 NLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 740

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R
Sbjct: 741 RATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 800

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AAD
Sbjct: 801 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 860

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I +RAM++V   + DH    KM+LQ+HDELVFE   + + T    +   M  A      L
Sbjct: 861 IIKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMAGAA----EL 916

Query: 959 RVPLKVNIKVSNNWQEEN 976
           RVPL V+  V +NW + +
Sbjct: 917 RVPLVVDSGVGDNWDQAH 934


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/983 (34%), Positives = 536/983 (54%), Gaps = 75/983 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    G+  +AI GF N L  +L+        +H AV 
Sbjct: 2   KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKREN----PTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD+I T 
Sbjct: 58  FDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIP-PEKMV 180
           +  AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+   E+++
Sbjct: 118 SKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K   +++ + E AE  
Sbjct: 178 DLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGA-QKKKVEENAEQI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R S+ L  ++TDVPI       + E  N  RL      LEF   IN+++ +    AA   
Sbjct: 237 RFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLS-SEPVKAAPKG 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV  D+                                    +  TP+     +   L+ 
Sbjct: 296 PVQGDL-----------------------------------FAIFTPESTEEPKKSILTD 320

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y      +      + L      +F   TD +D   +  + ++ +  + +   
Sbjct: 321 LKSTPHNYYLTDTEEKQADLARFLLGQEFFAFDTETDGIDPLKAGLVGMSFAVKENE--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +  ++ +          +++       +N   LKIG NIK+D LVL +Y 
Sbjct: 378 -----AWYVPVPANSVE--------VAKVVERFSPALQNPKSLKIGQNIKFDILVLRKYN 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           + + G   D M+  Y+L+     H +  +A+ +L Y     +E++    K+ + +  +  
Sbjct: 425 VKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQLSMRNVPV 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            Q+ E+A E++++ L+L     P+L  E L  ++  ++ P+I V+ +ME TG+ +D   L
Sbjct: 484 EQIAEYAAEDADITLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTA 654
           KQ S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK      KTKTG + T+ 
Sbjct: 544 KQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A T TGRL+
Sbjct: 604 DVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQNIP++ DLG++IR+AFI         SADYSQIELRI+AH++    + + F++
Sbjct: 663 STNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQS 722

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F LA +L IPRSE+ + I 
Sbjct: 723 GADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRSESKELID 782

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER AINAPIQ
Sbjct: 783 GYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERNAINAPIQ 842

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ +++  E+  L +KM+LQ+HDEL F V +EE     +I++  ME    
Sbjct: 843 GSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEVVKKIVLEEMENVM- 901

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL  +     NW E +
Sbjct: 902 ---KLQVPLIADCGEGENWLEAH 921


>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 921

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/980 (40%), Positives = 573/980 (58%), Gaps = 68/980 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK-ESIASH 60
            ++ HL L+DGS +I+RA++  P L+ K  GLP  A+ GF  MLWKL++N RK +   +H
Sbjct: 5   SEKPHLILIDGSGYIFRAYHRLPPLTNKA-GLPAGAVYGFTTMLWKLVENIRKQDDAPTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           FAVIFD    +FR ++YP YKA+RP  PE L+PQ PL+R AT+AF +P+IE +G EADDI
Sbjct: 64  FAVIFDSSRKSFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA Y+ +A + GF VT+ S+DKDLMQL+ P   L+D V    I  E V+KK+G+ PEK+ 
Sbjct: 124 IACYSRVALERGFQVTVYSSDKDLMQLIQPRLNLFDPVNNCLIGSEQVVKKFGVVPEKLG 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GD+ DNIPG+PG+G KTA+ L+ EYGNL  IL +A  IKQ K R+N++EY ETA
Sbjct: 184 DLLALMGDTADNIPGVPGVGPKTASRLINEYGNLSEILESAPEIKQPKLRQNLIEYKETA 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+LV L  D P+  PL++L+++  +   L  FL    F+ L+ R             
Sbjct: 244 ILSRELVALVDDKPLPEPLDNLVVKGVDMTPLRDFLSEQGFSSLLAR------------- 290

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                                      +  P     + +   S 
Sbjct: 291 ---------------------------------------AGGGQSAPVADGSKEMAASSS 311

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              + D+Y  +++ K + +W+  +   G  +    TD +DA  ++ + +++ST   K   
Sbjct: 312 QSFDPDAYETVIDEKALDRWIADIYQKGQVAVDTETDNLDATQAQLVGVSLSTEAGK--- 368

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                 I      H   D          ++  LK   E+   LKIG NIKYD +VL RYG
Sbjct: 369 ---ACYIPCGHGGHDLLDQKPDQMDLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRYG 425

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
           IS++ F+D ML+SY LD+GR  H +  ++  +  +     K +  + KS+I  + +    
Sbjct: 426 ISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPA 485

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E++++  +LW LL+P+L  +    +YE +D+P+  V+++ME  GI +D   L  
Sbjct: 486 ATRYAAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHH 545

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S+  + ++  LEE IY L+G +F +SSPKQLG++LF  +    G K+K+GQ+ T   +L
Sbjct: 546 LSSRFAHDISRLEEEIYVLAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTEL 605

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++      I   ILEWRQLSK+KSTY+D+L   +N  T RVHT +SL    TGRL+S +
Sbjct: 606 ERLAAEGEAIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRLSSTD 665

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T++G++IR AFI+     L+SADYSQIELR+ AH+A    L Q F    DI
Sbjct: 666 PNLQNIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFREKEDI 725

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H + A ++FG     V  + R  AKTINF+I+YGIS + LA +L I R  A + I RYF 
Sbjct: 726 HALTAKQLFG----HVDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYFE 781

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RFP I  YI++T +FVR +GYVET FGR+ H   I S K + R   ER AINAPIQG +A
Sbjct: 782 RFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMSA 841

Query: 898 DITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI +RAM+ +  +L    L++ KMLLQ+HDEL+FEVPEE+I  A  +I   M +A LP +
Sbjct: 842 DIIKRAMVRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIV 901

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L V L+V I    +W   +
Sbjct: 902 QLSVDLEVEIGTGTSWGAAH 921


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
 gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
          Length = 941

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/987 (34%), Positives = 541/987 (54%), Gaps = 57/987 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  ++ LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        S
Sbjct: 1   MNSDDKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAILGFVNTLEEVLKKEN----PS 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + IE V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSENVFMYRPKHTGGFEIMGIEQVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            ++++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 TQQVIDMLGLMGDASDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGA-LKTKVEN 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E+ N   L    + +EF  LI+RV    +  
Sbjct: 236 NREMITFSKFLATIKIDVPIKLDMKALVREEPNEEELRKIFEEMEFRTLIDRVLKKSNAP 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           + +     L                  +  ++ + F   +             +L  E+ 
Sbjct: 296 SPSSAAPDLFSPGPLF--------APNNGPVQGNLFEEFAGD-----------RLDDEKK 336

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L++   +N  Y  +   +   + ++KL T    S    T + +   ++ + ++ S  +
Sbjct: 337 SNLARLETSNFDYQLLDTEEKRSEIIKKLLTTKILSIDTETTSAEPMEAELVGMSFSDTE 396

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  ++ +     +          +I++  +  +ENE+ +K+G NIKYD LV
Sbjct: 397 N--------QAYYVPVPPEREE--------ALKIVNEFRPLYENENSMKVGQNIKYDILV 440

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG+ ++G   D ML  YVL      H++  +A+ +L Y      E++    K+   +
Sbjct: 441 LQNYGVEVKGELFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 499

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +   +V ++A E++++ L+L  +L  +L  + + H++  ++ P++ V++ ME  G++I
Sbjct: 500 RDLPPEEVYKYACEDADITLKLKNVLEEELKKQGVEHLFYEIEMPLVRVLANMESNGVRI 559

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ S   +  L  +E+ IY+L+GE FN++SPKQ+G+ILF KLK      KTKTGQ
Sbjct: 560 DTETLKQTSEHFTVRLQEIEKEIYELAGETFNIASPKQVGEILFDKLKIIDKAKKTKTGQ 619

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    + +I  ILE+R L K+  TY D+LP  IN RT R+HT ++ A T 
Sbjct: 620 YVTSEEVLESLR-NKHEVIGKILEYRGLKKLLGTYVDALPLLINPRTGRIHTSFNQAVTA 678

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   +  
Sbjct: 679 TGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDDCEFFSADYSQIELRIMAHLSEDKNMID 738

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  DIH   AA+I+ ++I+ V+P MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 739 AFLSGYDIHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYGISIFGLAERMNVDRKEAK 798

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +P + EY++K+    R+ GYVETIF R+    +INS  +++R   ER AIN
Sbjct: 799 ELIDGYFETYPQVREYMDKSIQVAREQGYVETIFHRKRFLPDINSRNATVRGYAERNAIN 858

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  + +KL  KM+LQ+HDEL F VPE E     QI++  ME
Sbjct: 859 APIQGSAADIIKVAMARIYERFQSYKLKAKMILQVHDELNFSVPEAEKEFVQQIVIEEME 918

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           +A      + VPL+ +     NW + +
Sbjct: 919 RA----YRMHVPLRADCGWGKNWLKAH 941


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/983 (38%), Positives = 568/983 (57%), Gaps = 54/983 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + + HL LVDGS +I+RAF+A P ++R  DG+PVNA+ GF  ML   L       + +H 
Sbjct: 32  ETQPHLILVDGSGYIFRAFHALPPMTR-PDGVPVNAVFGFTTMLGNFLTK----HVGTHI 86

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD   VTFR+EIYPDYKA+RP+ P  L+PQ  L+R AT AFG+  +E  GFEADD+I
Sbjct: 87  AVVFDSSRVTFRSEIYPDYKAHRPEPPPELVPQFALIREATAAFGVACVEQPGFEADDLI 146

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A Y     + G  VTI+S+DKDLMQLV P   L D +K++ I    V++K+G+ P+K+V 
Sbjct: 147 AAYAKGFVERGGQVTIVSSDKDLMQLVRPGVQLLDPIKQKPIREPEVLEKFGVTPDKVVD 206

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +QAL GDS DN+PG+PGIG KTAA L+ EYG+LE +L  A +I+Q KRRE ++ +AE AR
Sbjct: 207 VQALAGDSTDNVPGVPGIGVKTAATLILEYGDLEGLLAAAPQIRQPKRREALINFAEQAR 266

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +SR+LV+L  + P+  P++ L+       RL  FL+   F  L++R+    D D A+  P
Sbjct: 267 ISRRLVLLDENAPLPAPVDQLLARAPEPGRLAGFLREQGFRSLLHRMG--LDGDTADSAP 324

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V      T           +       + F                              
Sbjct: 325 VSRPRFATNGAVPEPAATAEPPPAADAAPFGP---------------------------- 356

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  +     +Q ++      G  +    TD++DA ++  + ++++    +    
Sbjct: 357 ------YETVTELAALQPFLDAARAGGLLAIDTETDSLDALNANLVGLSLAVAPGR-ACY 409

Query: 422 FKVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR- 478
             +       S     ++          E++  L+    +   LKI HN KYD  VL R 
Sbjct: 410 VPLRHGPPPGSGDLLAEAPAAPAQLSQAEVVEALRPLLADPAVLKILHNAKYDLEVLARP 469

Query: 479 -YG-ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            +G + +   +D ML+SY +D+GR  H +  ++ + L +      E+  + ++ IP  ++
Sbjct: 470 EHGALDITPVDDTMLISYSMDAGRHGHGMDELSLRHLGHRPIPFDEVTGTGRARIPFSQV 529

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  +   +A E+++V L+LW  LRP+L  ++ L +YE++++ M+ V+  ME+ GI++D  
Sbjct: 530 ALDKATAYAAEDADVTLRLWQALRPRLRPDRSLALYEQVERRMVAVLRDMEMAGIKVDGA 589

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  + S+ ++ LE+ I++L+G+ FN+ SPKQLG+ILF + K P G + K G W T 
Sbjct: 590 ELARIGEDFSQRMVVLEQEIHELAGKPFNVGSPKQLGEILFDEQKLPGGKRGKNGAWGTD 649

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A  LE +    + + + +L WRQL+K+KSTY + L   I++R  RVHT +S+A T TGRL
Sbjct: 650 ASVLEDLAARGHELPRRVLHWRQLAKLKSTYVEGLAAQIDRRDGRVHTDFSMAVTSTGRL 709

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIPI+T+ G +IRRAF++ P   L++ADYSQIELR+LAH+A +  L   F  
Sbjct: 710 SSTEPNLQNIPIRTEEGVRIRRAFVAEPGHVLLAADYSQIELRLLAHLADVPSLRDAFAK 769

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+IFG+  +KV  + RR AKTINF IIYG+S F LA +L I   EA   I 
Sbjct: 770 GEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYGMSAFGLAARLGIGPGEARGIID 829

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF ++PGI E +E+ K+  R+ GYV + FGR++  D I + + + R   ERAAINAP Q
Sbjct: 830 AYFSQYPGILEEMERLKSEAREKGYVLSPFGRKLWIDGIQAKEQARRGNAERAAINAPFQ 889

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G AA+I +RAM+ +  +L    L+ +MLLQ+HDEL+FEVPE E+   ++ +   ME    
Sbjct: 890 GGAAEIIKRAMVRMPAALRAAGLSARMLLQVHDELLFEVPEAEVDATAECVRQVMESVA- 948

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPLK  I    NW   +
Sbjct: 949 ---TLRVPLKAEIGHGANWAVAH 968


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/985 (34%), Positives = 529/985 (53%), Gaps = 86/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     +  AV
Sbjct: 20  ENPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYK----PTQMAV 74

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRNE+Y +YKA+RP +P+ L  Q+  +    +A G+P + I G EADD+I T
Sbjct: 75  VFDAKGKTFRNEMYAEYKAHRPPMPDDLRTQIEPLHRIIRALGLPLVCIPGVEADDVIGT 134

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +EG AV I + DKD+ QLV     L +T+    +  + V +K+G+ PE ++ L 
Sbjct: 135 IARQASQEGRAVLISTGDKDMAQLVDDKITLINTMTNTILGPDEVSEKFGVGPELIIDLL 194

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +LQ  G +E IL N  ++ +      K     I E+ 
Sbjct: 195 ALQGDKADNIPGLPGVGEKTALAMLQGVGGVEAILANPEKMPELGFRGAKTMPAKIAEHG 254

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++ DV +      L ++  +   LI     +EF + +            
Sbjct: 255 DMLKLSYELATIKCDVELEQDWHQLNIQGADRDELIKCYGEMEFKRWL------------ 302

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                E+  + +  +SQ                      E   +
Sbjct: 303 --------------------AEVLDNKSSASSQ----------------------EEADE 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +      +  Y  I+  + + +W++ L      +    T +++   +K + ++ +    K
Sbjct: 321 VPAPQAIDTQYDTILTWEALDEWLKALAAAPLFALDTETTSLNYMEAKMVGLSFAIEPGK 380

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+   +     +   ++++L+ LK   E+   LK+G N+KYD  +L 
Sbjct: 381 --------AAYLPLAHDYAD--APEQLDSEQVLAKLKPLLEDPSLLKVGQNLKYDMSILA 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI+++G   D ML SYV +S  S H++  +A K+L +     +EI       +  ++I
Sbjct: 431 NVGIALKGVAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L    +L  V+  ++ P++ ++SQ+E  G+ ID 
Sbjct: 491 PLETAAPYAAEDADITLRLHQHLWPRLQKASELASVFTDIELPLVSILSQIERQGVLIDS 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ +  LE+  Y+++GE FNL S KQL  + F KL +P   KT  G    
Sbjct: 551 MLLGQQSDELARKIDELEQKAYEIAGEPFNLGSTKQLQALFFEKLGYPVLKKTPKGAPS- 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K ILE R LSK+KSTY D LP  ++ +T RVHT Y  A   TGR
Sbjct: 610 TAEEVLVELALDYPLPKIILEHRSLSKLKSTYTDKLPLMVDGKTGRVHTSYHQAIAATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR AF++P  +K+++ADYSQIELRI+AH+++   L   F 
Sbjct: 670 LSSSEPNLQNIPIRTEEGRRIRHAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLSAFA 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+F V+  +V+ + RR AK +NF +IYG+S F LA QL IPR EA  YI
Sbjct: 730 EGKDIHRATAAEVFDVDFSEVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQQYI 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E T+    + GYV T++GRR++   I    +  R   ERAAINAP+
Sbjct: 790 DIYFKRYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPM 849

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++ + +E + +    M++Q+HDELVFEV  ++  +    +   M +A
Sbjct: 850 QGTAADIIKKAMINIAQWIETETQGEITMIMQVHDELVFEVDADKADSLKLKVCELMAQA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L V L     + +NW++ +
Sbjct: 910 A----SLDVELLAEAGIGDNWEQAH 930


>gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
 gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
          Length = 933

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/977 (39%), Positives = 570/977 (58%), Gaps = 51/977 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K  HL L+DGS+FI+RA++A P L+R  DG PV A++GFCNML K +  +     A+H A
Sbjct: 5   KGCHLHLIDGSAFIFRAYHALPPLTRPSDGAPVGAVSGFCNMLQKYIDTNSGADAATHVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  + TFRNE++  YKANR ++PE L PQ+PL R AT+AF I   E++ +EADD+IA
Sbjct: 65  VIFDKGSQTFRNEMFDQYKANRSEMPEDLRPQIPLTRRATEAFNIACKEMENYEADDMIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
                A   G  VTI+S+DKDLMQLV     + D +K  +ID + V +K+G+ P+++V +
Sbjct: 125 ALACQARAAGGRVTIVSSDKDLMQLVGDGVEMLDPMKNRRIDRDGVFEKFGVFPDRVVDV 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DNIPG PGIG KTAALL+ EYG+LE +L  A  IKQ KRR+ ++EY     L
Sbjct: 185 QALAGDSVDNIPGAPGIGIKTAALLINEYGSLEELLERAEEIKQPKRRQTLIEYRAQIEL 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S++LV L  D P+   L+ L + + +  RL+ FL  +EF  +  R++     +A      
Sbjct: 245 SKRLVQLDCDTPLDFTLDDLEMREPDPERLLGFLAEMEFRTIARRISDKLGVEA------ 298

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                               +       P     E ++     P
Sbjct: 299 -----------------------------------PAMPERAAGPAAPVEEAVE---APP 320

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
             + +Y +I +   ++QW+ ++   G  + + I D+        + +A++    +     
Sbjct: 321 FEHAAYERIADAAALEQWIARVYDRGYVALRPIADSASETTCALVGLALAVEPGQAGYLP 380

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                  +  +  S D           L+ L+   E++  +K+  + K    +L R+GI+
Sbjct: 381 LRHVGDSEQGLFGSSDLAEGQMDFDAALALLRPMLEDDSIMKVAQDAKAAMKLLGRHGIA 440

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQVQ 539
           +   +D  L+SY L+SG   H + +++ + L +   E+   + + KS+   D++    V 
Sbjct: 441 LAPVDDTHLLSYALNSGLHGHTLDTLSDRLLGHRPIELKSVVGTGKSARTFDRVPVEAVT 500

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E ++++L+LW  L+ +L  +++  VYE L++P+I V++ ME  GI++D+D L ++S
Sbjct: 501 PYAAEEADIVLRLWQALKQQLFRKQVTRVYETLERPLIPVLAGMERAGIRVDRDTLSRMS 560

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              S+ +  LE  +Y+L+G +FNL SPKQLG+ILF +L  P G K KTG + T A  LE 
Sbjct: 561 NAFSQKMAGLEAEVYELAGREFNLGSPKQLGEILFDELGLPGGKKGKTGAYGTGADVLED 620

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ +   IL+WRQ+SK+KSTY DSL  +I   T RVHT YS A   TGRLAS EPN
Sbjct: 621 L-ATEHDLPGRILDWRQISKLKSTYTDSLQGYIQPETSRVHTSYSQAGAATGRLASTEPN 679

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T+ G++IR AF++   K L+S DYSQIELRILAH+A +  L + F +  DIH 
Sbjct: 680 LQNIPVRTEEGRRIREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHA 739

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+F V +E+++P +RR AK INF +IYGIS F LA  LRIPR EA  +I RYF RF
Sbjct: 740 ATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGLARSLRIPREEAQGFINRYFERF 799

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI +Y+++T  F +++G+V+T+FGR+IH  EIN+ K        RAAINAPIQG+AAD+
Sbjct: 800 PGIRDYMDETVAFAKEHGFVQTLFGRKIHTPEINA-KGPGAGFARRAAINAPIQGTAADV 858

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            RRAM+ +  ++    L   MLLQ+HDEL+FEV E  +          ME A +P +   
Sbjct: 859 IRRAMVRMPAAI--EGLPATMLLQVHDELLFEVEEGAVEALVAAAREVMEAAAMPVVQFT 916

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+     NW   +
Sbjct: 917 VPLVVDAGQGTNWAAAH 933


>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
 gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
          Length = 921

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/977 (35%), Positives = 547/977 (55%), Gaps = 62/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAFHALPPLTT-STGLHTNAIRGAISAIQKLMRRTQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+ + P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHVLSPIYKGDRPSMPEELSEQIPYLHALIRALGIPLYMLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AE  G  V I + DKD+ QLV+    L D+ K++ +D+  V +K+G+ P +++    
Sbjct: 117 AKRAEAAGQQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDVNGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG++  IL N  +IK  K  +NI E+A+   L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGSIGGILENVDKIKG-KVGQNIKEHADGIALDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+   +  + L L+D N   L S    LEF + +  +    + ++A  +    
Sbjct: 236 QLASIVCDLETGLTFDDLKLQDPNTEALRSLYTELEFRQQLQSLDHPNNPNSATYKQATQ 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            I  +      I TE         +  SS+ DQ  + N                      
Sbjct: 296 HIAKSAQSETVINTE-------DQAVQSSVDDQLGQAN---------------------- 326

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  +++ +   Q  ++L T    +F   T ++D   ++ +  +++   Q        
Sbjct: 327 ---YHTVLSAEQWTQLFKRLSTEKRFAFDTETTSLDYRVAQIVGFSVAFDAQ-------- 375

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++ L+     ++       ++IL+ +K   E+E   KIGH++KYD  VL  +GI ++
Sbjct: 376 DAYYVPLAHDY--ENAPAQLDREQILAQIKPILEDESVQKIGHHLKYDAHVLENHGIELK 433

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +++ +LS+   T +++          ++I       
Sbjct: 434 GWYFDTMLASYVLNAVATRHGMDDVSRLYLSHLTTTFEQVAGKGAKQKTFNQIEIETAAH 493

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L+++   ++ P+  V++ ME  GI++D   L Q+ 
Sbjct: 494 YAAEDAHVTYRLFEVLDAKLQKHPELVNILHNVEMPVARVLTIMEENGIELDLGFLDQLG 553

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +  + +LE  I +L+G+ FN+SSPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 554 IEFANTMANLESQITELAGQSFNVSSPKQVGEILFDKLGLKGGKKTATGQYSTSESVLEK 613

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   D+PI + IL++R LSK+KSTY D L    N  T RVHT Y  A T TGRL+S +PN
Sbjct: 614 I---DHPITELILDYRGLSKLKSTYTDGLLKQANSDTHRVHTSYHQALTATGRLSSTDPN 670

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++ ++G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 671 LQNIPVREEIGRQIRKAFIAPQGRVLLAADYSQIELRLMAHFSQDEALVDAFKHGQDVHR 730

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ GV +E V+   RR AK +NF ++YG+S F L  QL   R E+  YI +YF R+
Sbjct: 731 RTAAEVLGVALEDVTSDQRRQAKAVNFGLLYGMSEFGLTRQLGFSREESRGYIAKYFQRY 790

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +Y+E+T+   R+ G+VETI GRR++  +I +    I+   ERAAINAP+QGSAADI
Sbjct: 791 PGVLDYMERTRQIAREQGFVETILGRRLYTPDIMASNKMIKQAAERAAINAPLQGSAADI 850

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V + L   +  TKMLLQ+HDELVFEV E      +  +   M+      + + 
Sbjct: 851 IKMAMIAVDQMLPKDQ--TKMLLQVHDELVFEVDESIADELASKLADVMQSV----LQIS 904

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW E +
Sbjct: 905 VPLLVEVGKGRNWDEAH 921


>gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 921

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/980 (40%), Positives = 573/980 (58%), Gaps = 68/980 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK-ESIASH 60
             + HL L+DGS +I+RA++  P L+ K  GLP  A+ GF  MLWKL++N RK +   +H
Sbjct: 5   SDKPHLILIDGSGYIFRAYHRLPPLTNKA-GLPAGAVYGFTTMLWKLVENIRKQDDAPTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           FAVIFD    +FR ++YP YKA+RP  PE L+PQ PL+R AT+AF +P+IE +G EADDI
Sbjct: 64  FAVIFDSSRKSFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA Y+ +A + GF VT+ S+DKDLMQL+ P   L+D V    I  E V+KK+G+ PEK+ 
Sbjct: 124 IACYSRVALERGFQVTVYSSDKDLMQLIQPRLNLFDPVNNCLIGSEQVVKKFGVVPEKLG 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GD+ DNIPG+PG+G KTA+ L+ EYGNL  IL +A  IKQ K R+N++EY ETA
Sbjct: 184 DLLALMGDTADNIPGVPGVGPKTASRLINEYGNLSEILESAPEIKQPKLRQNLIEYKETA 243

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+LV L  D P+  PL++L+++  +   L  FL    F+ L+ R             
Sbjct: 244 ILSRELVALVDDKPLPEPLDNLVVKGVDMTPLRDFLSEQGFSSLLAR------------- 290

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                                      +  P     + +   S 
Sbjct: 291 ---------------------------------------AGGGQSAPVADGSKEMAASSS 311

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              + D+Y  +++ K + +W+  +   G  +    TD +DA  ++ + +++ST   K   
Sbjct: 312 QSFDPDAYETVIDEKALDRWIADIYQKGQVAVDTETDNLDATQAQLVGVSLSTEAGK--- 368

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                 I      H   D          ++  LK   E+   LKIG NIKYD +VL RYG
Sbjct: 369 ---ACYIPCGHGGHDLLDQKPDQMDLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRYG 425

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
           IS++ F+D ML+SY LD+GR  H +  ++  +  +     K +  + KS+I  + +    
Sbjct: 426 ISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPA 485

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E++++  +LW LL+P+L  +    +YE +D+P+  V+++ME  GI +D   L  
Sbjct: 486 ATRYAAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHH 545

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S+  + ++  LEE IY L+G +F +SSPKQLG++LF  +    G K+K+GQ+ T   +L
Sbjct: 546 LSSRFAHDISRLEEEIYALAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTEL 605

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++      I   ILEWRQLSK+KSTY+D+L   IN  T RVHT +SL    TGRL+S +
Sbjct: 606 ERLAAEGEVIASKILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVGAQTGRLSSTD 665

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T++G++IR AFI+     L+SADYSQIELR+ AH+A    L Q F+   DI
Sbjct: 666 PNLQNIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDI 725

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H + A ++FG     V  + R  AKTINF+I+YGIS + LA +L I R  A + I RYF 
Sbjct: 726 HALTAKQLFG----HVDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYFE 781

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RFP I  YI++T +FVR +GYVET FGR+ H   I S K + R   ER AINAPIQG +A
Sbjct: 782 RFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMSA 841

Query: 898 DITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           DI +RAM+ +  +L    L++ KMLLQ+HDEL+FEVPEE+I  A  +I   M +A LP +
Sbjct: 842 DIIKRAMVRMEPALAKVGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIV 901

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L V L+V I    +W   +
Sbjct: 902 QLSVDLEVEIGTGTSWGAAH 921


>gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454]
 gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
          Length = 927

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/983 (34%), Positives = 530/983 (53%), Gaps = 75/983 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R  DG P  A+ G  NM+ +L    R++  A + A
Sbjct: 11  EGKTLLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGLINMMRRL----RRDIPAEYSA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ Y DYKA+RP +PE L  Q+  + +A +A G P + I+  EADD+I 
Sbjct: 66  CVFDAKGKTFRDDWYADYKAHRPPMPEDLARQIEPIHVAVRALGWPLLMIERVEADDVIG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  V + + DKDL QLV+    L +T+  E++D + VI K+G+PPE++V  
Sbjct: 126 TLAVRAAQAGMNVVVSTGDKDLAQLVNERVTLINTMTNERLDRDGVIAKFGVPPERIVDY 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L GD++DN+PG+   G KTA   L +Y  L+ I+ +A+ IK     +N+         
Sbjct: 186 LTLIGDTVDNVPGVDKCGPKTALKWLAQYQTLDGIIEHANDIKGA-VGDNLRRALAFLPT 244

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +R+LV + T+  ++  ++     L         L        F   +  +          
Sbjct: 245 ARRLVTVHTECDLSPQVQSIATSLQARAEAKDELRDIYLRHGFKTWLREL---------- 294

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             ++E   DT   T+         +    E  P           
Sbjct: 295 ------------------DSEAGPDTFTATADGGVALGPGAV---EPAPATDI------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +   +  ++W+  +E     SF   T ++D   ++ + ++ +T   + 
Sbjct: 327 ------ERQYETVNAWEQFERWLAVIEAAPLTSFDTETTSLDPMRARIVGVSFATEPGR- 379

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L+ H   D         E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 380 -------AAYVPLA-HRGPDHPV-QLPRDEVLARLKPWLESPAHKKVGQHLKYDAQVLAS 430

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           +GI++ G   D +L SYVL+S R  HD+ ++A + L       +++     + I  D++S
Sbjct: 431 HGITLAGIEHDTLLESYVLESHR-PHDMDNLATRHLGVKTIKYEDVAGKGAAQIGFDEVS 489

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                E++ E++++ L+L  +L P++ VEK L +VY  ++ P   V+  +E  G+ ID+D
Sbjct: 490 VDVATEYSAEDADITLRLHQVLYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKD 549

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S E+   +L L+   Y L+G +FNL+SPKQ+G+I F +L+ P   KT +G    T
Sbjct: 550 RLVAQSNELGIRMLELQAEAYALAGGEFNLNSPKQIGEIFFQQLQLPVVKKTPSGAPS-T 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +D+ Q    D P+ K +L++R L+K+KSTY D LP  IN  T RVHT Y+ A  +TGRL
Sbjct: 609 DEDVLQKLAEDYPLPKVLLDYRALTKLKSTYTDKLPKMINPDTGRVHTNYAQAVAVTGRL 668

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP   ++SADYSQIELRI+AHI+    L   FE+
Sbjct: 669 ASNDPNLQNIPVRTPEGRRIREAFIAPPGSSIVSADYSQIELRIMAHISGDASLMAAFEH 728

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  A+EIFGV  ++V+ + RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 729 GEDVHRATASEIFGVTRQEVTSEQRRIAKVINFGLIYGMSAFGLASNLGIARDAAKLYID 788

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+   +  G+V+T+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 789 RYFARYPGVARYMDETRMEAKSCGFVQTVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 848

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   +E  ++ +++++Q+HDELV EVP++E+      +   M     
Sbjct: 849 GTAADLIKLSMITVQDWIERARVKSRLIMQVHDELVLEVPDDELEIIRAKVPELMCSVA- 907

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL   +    NW+E +
Sbjct: 908 ---QLNVPLVAELGTGANWEEAH 927


>gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR]
 gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR]
          Length = 921

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/987 (34%), Positives = 526/987 (53%), Gaps = 86/987 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS+++RAF+A P L+    G P  AI G  NML  LL+  +     SH AV
Sbjct: 7   ENPFILVDGSSYLFRAFHAPPHLTNSK-GEPTGAIYGVVNMLRSLLKRYK----PSHMAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++IY DYKANRP +P+ L  Q+  +    QA G+P + I   EADD+I T
Sbjct: 62  VFDAKGKTFRSDIYQDYKANRPPMPDDLRSQIKPLHDIVQAMGLPLLCIDDVEADDVIGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G    I + DKD+ QLV+    L +T+ +  +D E V KK+G+ P +++   
Sbjct: 122 LARQAGDKGRFTLISTGDKDMAQLVNEHVMLINTMTDTLMDPEGVEKKFGVKPNQIIDYL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GDS DNIPG+P +G KTA  LLQ   +++ I  N   +        K     + EY 
Sbjct: 182 ALMGDSSDNIPGLPKVGEKTAQALLQSIPSIDAIYENVDAVTELSFRGAKSMPAKLNEYK 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E   +SR+L  ++ DV + +  E L ++  +  +L       EF + ++ +         
Sbjct: 242 EQLLMSRELATIKLDVAMDLQPEELKIQTADSEKLQELYSRCEFRRWLDEL--------- 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                      + +     ++  E   +
Sbjct: 293 -------------------------------------------METGAATNQVLGETDGE 309

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                IN D+Y  ++  K++  ++ +L      +F   T +++   ++ + ++++     
Sbjct: 310 KPTSDINRDAYGVLMTEKEVSDYITQLNKFDYFAFDTETTSLNYMEAELVGVSLAMAPG- 368

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   +++      +D          +L  LK   E E   K+G N+KYD  +L 
Sbjct: 369 EAVYIPVGHDYMEAPDQVGRD---------WLLEQLKPLLEAEKPQKVGQNLKYDSHILR 419

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           RY I + G   D ML SYV +S  S HD+ +++  +L++     ++I       +  ++I
Sbjct: 420 RYKIRLAGILNDTMLASYVFNSVGSRHDMDTLSLHYLNHKTISFEDIAGKGAKQLTFNQI 479

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +  Q   +A E++++  +L  +L  K+     +L  V   ++ P++ ++  ME  G++ID
Sbjct: 480 ALEQAGPYAAEDADITYRLHDVLWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVRID 539

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            +LL + S EI++ L +LE+  ++++GE+FNL SPKQL  I F KL+ P   KT  G   
Sbjct: 540 ANLLGKQSQEIAEKLDALEKKAFEIAGEEFNLGSPKQLQRIFFEKLELPIVKKTPKGAPS 599

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++   D P+   IL+ R LSK+KSTY D LP  IN  T RVHT Y  A T TG
Sbjct: 600 TAEEVLHEL-AHDYPLPDVILQHRGLSKLKSTYTDKLPKMINPDTGRVHTSYQQAVTATG 658

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+T  G+++R+AFI     K+++ DYSQIELRI+AH+++   L + F
Sbjct: 659 RLSSTDPNLQNIPIRTAEGRRVRQAFIPEQGYKIVAIDYSQIELRIMAHLSQDESLLKAF 718

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              LDIHR  AAE+FG   ++VS   RR AK +NF +IYG+S F LA QL I R EA  Y
Sbjct: 719 AEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVNFGLIYGMSAFGLARQLGIARHEAQHY 778

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           + +YF RFPG+  Y+E T+   ++ GYV+T+FGRR+   +I +   + R   ERAAINAP
Sbjct: 779 MDKYFERFPGVLRYMEDTRKQAKEQGYVKTLFGRRLPLPDIKASNGARRKGAERAAINAP 838

Query: 892 IQGSAADITRRAMISVHKSLEDHK--LATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +QG+AADI ++AM+ V   ++ +      +ML+Q+HDELVFE+ E ++T   + +   ME
Sbjct: 839 MQGTAADIIKKAMLKVADWIDSNNCQDDVRMLMQVHDELVFEIKESKLTDYIEQLTEVME 898

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           KA     +L VPL       NNW E +
Sbjct: 899 KAA----SLDVPLIAEAGKGNNWDEAH 921


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score =  932 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/989 (34%), Positives = 536/989 (54%), Gaps = 51/989 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MNSIDKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E +  E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDNVFMYRPKHTGGFEIMGTEEVKTKFSIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++ +  L GD+ DNIPG PG+G KTA  L+ ++G++EN+L +  ++K    +  +  
Sbjct: 177 TAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLVAQFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++TDVPI + ++ L+ E+ N   L    + LEF  LI+RV      +
Sbjct: 236 NREMIAFSKFLATIKTDVPIRLKMDSLVREEPNEEELRKIFEELEFRTLIDRVLKKGSGN 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTT--IKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           +++  P     +       A       + +  I+   F++ + + + ++     +   L 
Sbjct: 296 SSSPTPTSPVPDLFAGTLFAQPQTSTPENSAPIQGDLFANFAGEGTGVS-----ENSNLT 350

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           RL+ L      +  Y  I       + +QKL T    S    T   +   ++ + ++ S 
Sbjct: 351 RLEML------DVDYQLIDTEDKRAEIIQKLLTSEILSIDTETTGTEPMDAELVGMSFSD 404

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + +          ++ +     +          +I++  +  FENE  +K+G NIKYD 
Sbjct: 405 AENR--------AYYVPVPAEREE--------VLKIVNEFRPLFENEKSMKVGQNIKYDM 448

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS----RKSSI 528
           ++L  YG+ ++G   D ML  YVL      H++  +A+ +L Y    I K      K+  
Sbjct: 449 IILQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDKLIGARGKNQK 507

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +S   V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +E  G+
Sbjct: 508 NMRDLSPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIEMPLVPVLVNIESNGV 567

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
            +D + LKQ S   +  L  +E+ IY+++GE FN+SS KQ+G++LF KLK      KTKT
Sbjct: 568 LLDTEALKQSSQHFTVRLQEIEKEIYEMAGETFNISSAKQVGEVLFDKLKIVEKAKKTKT 627

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+  T++++ Q     + II  ILE+R L K+ STY D+LP  IN RT R+HT ++ A 
Sbjct: 628 GQY-VTSEEVLQSYRSKHDIIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQAV 686

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   +
Sbjct: 687 TATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNM 746

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F +  DIH   AA+I+ ++I  V+  MRR AKT NF IIYGIS F LA ++ + R E
Sbjct: 747 IEAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVSRQE 806

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF  +P + EY++K+    R+ GYVETIF R+    +INS    +R   ER A
Sbjct: 807 AKELIDGYFETYPQVKEYMDKSIQVAREQGYVETIFHRKRFLPDINSRNGVVRGYAERNA 866

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQGSAADI + AM  +++  + + L  KM+LQ+HDEL F VPE E     +I++  
Sbjct: 867 INAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKELVQKIVIEE 926

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME+A      ++VPLK +    NNW + +
Sbjct: 927 MEQA----YRMQVPLKADCGWGNNWLQAH 951


>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
 gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
          Length = 926

 Score =  932 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/977 (35%), Positives = 532/977 (54%), Gaps = 59/977 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
             A  +G +VTI + DKD  QLV P   L +T+   ++D    VI K+G+ P ++V L A
Sbjct: 117 LQAASDGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPNQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+IDN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  EN+        L+R
Sbjct: 177 LMGDAIDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGENLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++TDV +      L L D N   L        F++ +  +       AA ++   +
Sbjct: 236 ELVTIKTDVVLASGPRALDLRDPNAEALAVLYARYGFSQALRELG---GAAAAGVQTDAM 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            +  TE         +    +       +L+                             
Sbjct: 293 AVARTEPGRARGTGFVSGPASAPVELDPALAAPG-------------------------- 326

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I+    +  W+ +L   G  +F   TD++D   +  I ++++            
Sbjct: 327 --QYETILTQAQLDNWIVRLRAAGQFAFDTETDSLDPLQANLIGLSVAAEPG-------- 376

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++                  + L+ L     +    K+G + KYD  V+ R+G+ + 
Sbjct: 377 QAAYLPFGHDFP--GAPAQLDRTQALAQLAPLLTDPALRKLGQHGKYDLHVMRRHGVELA 434

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL+SG + HD+ S+A+++L Y     +++       I   ++S      
Sbjct: 435 GYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIKFAQVSLEDATR 494

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L PKL  E  L  VY  ++ P+++V++++E  G+ +D   L++ S
Sbjct: 495 YAAEDADITLRLHQVLGPKLSAEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQS 554

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 555 ADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEALE 613

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +PN
Sbjct: 614 AIADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN 673

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++    L   FE+  D+HR
Sbjct: 674 LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVSAFESGADVHR 733

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+
Sbjct: 734 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 793

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI
Sbjct: 794 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 853

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+SV   + +H     M+LQ+HDELVFE   + + T    +   M  A      LR
Sbjct: 854 IKRAMVSVDGWIAEHAQRALMILQVHDELVFEADIDFVDTLLSEVTARMATAA----QLR 909

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V +NW E +
Sbjct: 910 VPLVVDSGVGDNWDEAH 926


>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
 gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
          Length = 913

 Score =  932 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/983 (36%), Positives = 531/983 (54%), Gaps = 86/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ YP+YKANRP +P+ L  Q+  + +A +A G P + I G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDWYPEYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  AEK G  V + + DKDL QLVS    L +T+  EK+D   V+ K+G+PPE++V  
Sbjct: 123 TLSTEAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +Y +L+ I+ +A  IK     +N+    +   +
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTALKWLTQYESLDGIVAHAGEIKGA-VGDNLRRALDFLPM 241

Query: 243 SRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV +  +  +T  +    E+L     +   L        F   +  V          
Sbjct: 242 ARKLVTVERNCDLTEHITSIEENLQSRPESREELRDVFTRHGFKTWLREV---------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                              ++D      ++  P           
Sbjct: 292 ----------------------------------EIADAVEGPETDVPPALTVD------ 311

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +   Y  +   +    W+Q++      SF   T ++D   ++ + ++ S  +   
Sbjct: 312 -----HERHYETVQTWEQFDAWLQRINAAELTSFDTETTSLDPMTAQIVGLSFSV-EAGH 365

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D  V             +E+L+ LK + E+    K+G ++KYD+ VL  
Sbjct: 366 AAYVPVAHRGPDAPV---------QLPREEVLAKLKPWLESAQQKKVGQHLKYDEQVLAN 416

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI MRG   D +L SYVL+S R  HD+ ++A + L       +++       I  D+++
Sbjct: 417 YGIEMRGIEHDTLLQSYVLESHR-PHDMDNLALRHLGVKTIKYEDVAGKGAQQIGFDEVA 475

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   + P+L  EK L +VY  ++ P   V+ +ME TG+ ID +
Sbjct: 476 LEKAAEYAAEDADITLRLHQTMYPQLAAEKTLENVYRDIEVPTSRVLRKMERTGVLIDAE 535

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+Q S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 536 KLRQQSNEIATRLIELESKAYELAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTD 595

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 596 EEVLQKL-AEDYPLPKILLEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAVTGRL 654

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F  
Sbjct: 655 ASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQ 714

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 775 RYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V K +E+  + T+M++Q+HDEL+ EVP+EE+    + +   M     
Sbjct: 835 GTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDEELPEVRKRLPELMCGVAA 894

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 895 ----LKVPLVAEVGAGLNWEEAH 913


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/984 (38%), Positives = 560/984 (56%), Gaps = 59/984 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +  HL LVDGS FI+RAF+A P ++   +G+PVNA+ GF  ML +LL    K+ + +H
Sbjct: 1   MTETPHLVLVDGSGFIFRAFHALPPMT-SPEGVPVNAVYGFTTMLARLL----KDHVGTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR+EIYP YKA+RP+ PE L PQ  L+R ATQAF +P IE+ G+EADD+
Sbjct: 56  LAVLFDASRQTFRSEIYPQYKAHRPEPPEDLRPQFSLIREATQAFNVPGIELPGWEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+Y      +G   TI+S+DKDLMQLV    C+ D +K+  +    V  K+G+PP K+V
Sbjct: 116 IASYATAIRAQGGTCTIVSSDKDLMQLVGDGVCMLDPIKQTPVGPTEVETKFGVPPTKVV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GD  DN+PG+PGIG KTAA L+QEYG LE +L  A  +K+ KRR+ ++E+A+ A
Sbjct: 176 DVQALMGDPTDNVPGVPGIGPKTAAALVQEYGTLEAVLNAAPEMKKSKRRDMLIEHADAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+S +LV L TDVP+ +P+E L   + +   L  +L  + F  +++R+            
Sbjct: 236 RVSLQLVTLATDVPLPVPVEELGTREPDMLVLADWLDRMGFRSILSRM------------ 283

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                       G+   +        +    +S++  T+  +    P    L        
Sbjct: 284 ------------GLGHPSGAHAHRAARKVAAASVAGATTPADDASAPDASVL-------- 323

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  +   + +Q+WV   +  G  +    TD +D   +  +  +I+T   K   
Sbjct: 324 -SAPYHDYETVRTAEALQKWVSAAQEAGICAVDTETDGLDPLAANIVGFSIATAPGK--- 379

Query: 421 SFKVETIFIDLSVHTSQDST-GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  ++ L    + ++  G+       L  L    +++  LKI HN K+D L+L   
Sbjct: 380 -----ACYVPLKHEGTLEAPTGEQLAVDAALKLLAPLLQDDAVLKIFHNAKFDLLILDHA 434

Query: 480 GISMRGF---EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           GI +      +D ML+SY   +G     +  ++   LS+T      +  + ++ +P  ++
Sbjct: 435 GIPLSSITAVDDTMLISYSQSAGLHGQGMDELSAMHLSHTPISYDSVTGTGRNRLPFAQV 494

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +   ++A E+++V L+LW +L P L   K L +YE++++P+  +++ ME  GI +D+ 
Sbjct: 495 PVATATKYAAEDADVTLRLWHVLHPTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRA 554

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++S +    +  +E +IY+ +G +FN+ SPKQLG+ILF ++    G + K G W T 
Sbjct: 555 ELDRLSKDFEARMQGMENDIYEAAGRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTD 614

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +  L+ +    + +   IL WRQL+K+KSTY D+L      R  RVHT + +A T TGRL
Sbjct: 615 SSVLQDLADQGHDLPARILAWRQLAKLKSTYTDALLRQA-GRNDRVHTSFQMAITSTGRL 673

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++T+ G +IR+AFI+PP KKLISADYSQIELR+LA +A I  L + F+ 
Sbjct: 674 SSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQIELRLLADVANIPALREAFQL 733

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A+E+F + +E +    RR AK INF IIYGIS F L  QL IP  EA  YI 
Sbjct: 734 GQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYID 793

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PGI +Y+E+ +   R +GYV T FGRR +   I+   ++ R   ER AINAP+Q
Sbjct: 794 AYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQ 853

Query: 894 GSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G AADI +RAM+ +  +L+      T+MLLQ+HDEL+FE  E E    + II + ME A 
Sbjct: 854 GGAADIIKRAMVHLPLALQKAGFGETRMLLQVHDELLFETDESEAEAVAAIIKNVMEAAA 913

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L VPL V   +  NW E +
Sbjct: 914 ----DLAVPLVVETGIGQNWAEAH 933


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/983 (34%), Positives = 536/983 (54%), Gaps = 75/983 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    G+  +AI GF N L  +L+        +H AV 
Sbjct: 2   KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKREN----PTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD+I T 
Sbjct: 58  FDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIP-PEKMV 180
           +  AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+   E+++
Sbjct: 118 SKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K   +++ + E AE  
Sbjct: 178 DLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGA-QKKKVEENAEQI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R S+ L  ++TDVPI       + E  N  RL      LEF   IN+++ +    AA   
Sbjct: 237 RFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLS-SEPVKAAPKG 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV  D+                                    +  TP+     +   L+ 
Sbjct: 296 PVQGDL-----------------------------------FAIFTPESTEEPKKSILTD 320

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y      +      + L      +F   TD +D   +  + ++ +  + +   
Sbjct: 321 LKSTPHNYYLTDTEEKQADLARFLLGQEFFAFDTETDGIDPLKAGLVGMSFAVKENE--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +  ++ +          +++       +N   LKIG NIK+D LVL +Y 
Sbjct: 378 -----AWYVPVPANSVE--------AAKVVERFSPALQNPKSLKIGQNIKFDILVLRKYN 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           + + G   D M+  Y+L+     H +  +A+ +L Y     +E++    K+ + +  +  
Sbjct: 425 VKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQLSMRNVPV 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            Q+ E+A E++++ L+L     P+L  E L  ++  ++ P+I V+ +ME TG+ +D   L
Sbjct: 484 EQIAEYAAEDADITLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTA 654
           KQ S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK      KTKTG + T+ 
Sbjct: 544 KQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A T TGRL+
Sbjct: 604 DVLEKLRS-KHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQNIP++ DLG++IR+AFI         SADYSQIELRI+AH++    + + F++
Sbjct: 663 STNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIEAFQS 722

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+G+ +EKV+  MRR AKT NF IIYGIS F LA +L IPRSE+ + I 
Sbjct: 723 GADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRSESKELID 782

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER AINAPIQ
Sbjct: 783 GYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLSDINSHNAVVRGYAERNAINAPIQ 842

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ +++  E+  L +KM+LQ+HDEL F V +EE     +I++  ME    
Sbjct: 843 GSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEEVKKIVLEEMENVM- 901

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL  +     NW E +
Sbjct: 902 ---KLQVPLIADCGEGENWLEAH 921


>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
 gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
          Length = 906

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/977 (35%), Positives = 545/977 (55%), Gaps = 77/977 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L R     P  AI G  NML +L +  + +      A +
Sbjct: 2   KTLVLVDGSSYLYRAFHALPDL-RNRLNEPTGAIYGVLNMLRRLYKEYQPDYS----ACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR EIYP YKANRP +P  L  Q+  +    +A G P +  +  EADD+I T 
Sbjct: 57  FDAKGKTFREEIYPQYKANRPPMPADLAGQINPLYACIRAMGWPLLVEEQVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  E     I + DKD+ QLV+P   L +T+  E +D   V++K+G+ P +++   A
Sbjct: 117 ARRAAGERIQCVISTGDKDIAQLVAPGIRLVNTMNSESLDEAGVLQKFGVMPAQIIDFLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DNIPG+  +G KTA   L +YG+L N++ +A  IK     EN+ +  +  ++SR
Sbjct: 177 LVGDSVDNIPGVEKVGPKTAVKWLNQYGSLNNLIAHAHEIKG-VVGENLRKALDWLQVSR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L+ ++ DVP+ +  + L+    +  RL++  + L                         
Sbjct: 236 ELLTIKCDVPLAMGWQDLVAAPLDVARLMALYEHL------------------------- 270

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                    +F S   +  + +SE  P  + +       +   +
Sbjct: 271 -------------------------EFRSWLRELRQSDSETGPATIPMYDPLVPGERNSD 305

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           +  Y  I+     ++WVQ+ E+    S    T +++   ++ + +++ T           
Sbjct: 306 SRDYQIILTDSQFEEWVQQCESAELVSIDTETTSLNPMEAELVGLSLCTEPG-------- 357

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L+ H            +++L  LK + EN    K+G N+KYD+ V   +G+ + 
Sbjct: 358 HAAYIPLAHHYQ--GVPSQLNREQVLQRLKPWLENSDIPKVGQNLKYDRHVFANHGVMLN 415

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G   D +L SYVL+S  S HD+ S+A++ L        ++       I  +++   Q   
Sbjct: 416 GIAHDTLLQSYVLESHLS-HDLDSLARRHLDIQTISYDDVTGKGAKRIGFEQVEIQQAGI 474

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L   L P +  +  L H+Y++++ P+++V+ ++E  G+ +D DLL++ S
Sbjct: 475 YAAEDADIPLRLHHFLYPIISKDAHLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLREQS 534

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+++ L+ LE+  + L+G  FNL+S KQ+ +ILF + K P   KT  G   T  + L+Q
Sbjct: 535 GELARQLVILEQQAHSLAGRAFNLNSTKQIQEILFGQHKLPVIKKTPKGAPSTDEEVLQQ 594

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D P+ K +L++R L+K++STY D LP  +N++T RVHT Y+ A  +TGRLAS +PN
Sbjct: 595 LAL-DYPLPKILLDYRSLAKLRSTYIDKLPQMVNRQTGRVHTNYAQAVAVTGRLASNDPN 653

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T  G++IR AFI+P    +ISADYSQIELRI+AHI++   L + F    DIH 
Sbjct: 654 LQNIPVRTPEGRRIREAFIAPSGWYIISADYSQIELRIMAHISQDAGLIRAFLGGQDIHS 713

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG+++ +V+ + RR+AK INF +IYG+S F LATQL I RS A  +I RYF R+
Sbjct: 714 ATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMSEFGLATQLGIDRSAARAFIDRYFARY 773

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +Y+++T+   RQNGYVET+ GRR+   +I S + + R   ERAAINAP+QG+AADI
Sbjct: 774 PGVADYMQRTRELARQNGYVETVLGRRLQLPDIRSSQHNRRMGAERAAINAPMQGTAADI 833

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMISVH+ L    L +K+++Q+HDELV EV E+E+    + ++  ME        L 
Sbjct: 834 IKLAMISVHQWLVKAPLQSKLIMQVHDELVLEVIEDELFVVKENLIILMEN----TFKLD 889

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPLKV + V  NW + +
Sbjct: 890 VPLKVEVGVGKNWDQAH 906


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/990 (35%), Positives = 530/990 (53%), Gaps = 85/990 (8%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  EN L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     
Sbjct: 27  MPKIAENPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYK----P 81

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           S  AV+FD    TFRN++Y +YKA RP +P+ L  Q+  +    +A G+P + I G EAD
Sbjct: 82  SQMAVVFDAKGKTFRNDMYEEYKAQRPPMPDDLRTQIEPLHNIIRALGLPLVCIPGVEAD 141

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A KEG AV I + DKD+ QLV     L +T+    +  E V +K+G+ PE 
Sbjct: 142 DVIGTIATQASKEGRAVLISTGDKDMAQLVDDNVTLINTMTNTIMGPEEVTEKFGVGPEL 201

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
           ++ L AL GD  DNIPG+PG+G KTA  +L   G++E IL    +I        K     
Sbjct: 202 IIDLLALQGDKADNIPGLPGVGEKTAVAMLTGAGSVEQILAAPEKIPALGFRGSKTMPAK 261

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + E+ E  +LS +L  ++ DV +    + L++   N   L+ +   +EF + +  V    
Sbjct: 262 LAEHGEMLKLSYELATIKLDVEMEQDWKELVIAPANKDDLVKYYGEMEFKRWLAEVL--- 318

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                            +NKG + +                 S   S    E  PQ +  
Sbjct: 319 -----------------DNKGSSAQ-----------------SSDNSADEEEVVPQAIDA 344

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E              Y  I+  + + +W+++L      +    T ++D   +K + I+ +
Sbjct: 345 E--------------YETILTHEALDKWIEQLTKADLIAIDTETTSLDYMTAKLVGISFA 390

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               K          ++ L+ H   D+  +     E ++ LK   E+    K+G N+KYD
Sbjct: 391 VEVGK--------AAYLPLA-HDYLDAP-EQLDFDEAIAKLKPLLEDPKLKKVGQNLKYD 440

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
             +    GI ++G   D ML SYV +S  S H++  +A K+L +     +EI       +
Sbjct: 441 ISIFANVGIKLQGVAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQL 500

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++I       +A E++++ L+L   L  +L  E KL  V+  ++ P++ V+S++E  G
Sbjct: 501 TFNQIDLETAAPYAAEDADITLRLHQHLWARLEKEPKLASVFTDIELPLVQVLSKIERQG 560

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  +L Q S EI+ ++  LE++ ++++GE FNLSSPKQL  + F KL +P   KT  
Sbjct: 561 VLIDSMMLGQQSQEIAISIDKLEQDAFEIAGETFNLSSPKQLQALFFEKLGYPVIKKTPK 620

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G    TA+++      D P+ K IL+ R L+K+KSTY D LP  +N ++ RVHT Y  A+
Sbjct: 621 GAPS-TAEEVLVELALDYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQSGRVHTSYHQAN 679

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S EPNLQNIPI+T+ G++IR AFI+   KK+++ADYSQIELRI+AH+++   L
Sbjct: 680 AATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAQEGKKVLAADYSQIELRIMAHLSQDKGL 739

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH+  AAE+FGV+  +V+ + RR AK +NF +IYG+S F LA QL IPR E
Sbjct: 740 LTAFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRGE 799

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+ +Y+E T+      GYV T++GRR++   I    +  R   ERAA
Sbjct: 800 AQKYIDTYFDRYPGVLKYMEDTRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAA 859

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMI++   +E        M++Q+HDELVFEV  ++     + I  
Sbjct: 860 INAPMQGTAADIIKKAMINIASWIESETHGEITMIMQVHDELVFEVDSDKAEALKEQICK 919

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M  A    ++L V L     + +NW++ +
Sbjct: 920 MMADA----VSLDVELLAEGGIGDNWEQAH 945


>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
 gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
          Length = 918

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/985 (35%), Positives = 532/985 (54%), Gaps = 84/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL         SH AV
Sbjct: 6   NNPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSR----YSPSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +     A G+P I I G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYGEYKAQRPPMPDDLRNQIEPLHRIIHAMGLPLISISGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A KEG A  I + DKD+ QLV+    L +T+ +  +  E V  K+G+ P++++   
Sbjct: 121 IALQASKEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVKTKYGVGPDRIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++ENIL +   +        K     I+E A
Sbjct: 181 ALMGDKSDNIPGLPGVGEKTALAMLLGMGSVENILADPQSVVEVGFRGSKTMPAKIIENA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +      + ++  +   LI     +EF + +  V         
Sbjct: 241 DMLKLSYELATIKTDVELAQDWHQMTVKPQDRDELIKSFGEMEFKRWLAEV--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                      ++++Q    +  +  ++
Sbjct: 292 -------------------------------------------LDNKQPRGTISQDSEEE 308

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +   P     Y  I+  + + +W++KL +    +    T +++   ++ + ++ +T   K
Sbjct: 309 VIVSPTIEAEYETILTMEALDKWIEKLNSAELIAIDTETTSLNYMEAELVGLSFATEAGK 368

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +   ++D  +                L  L+   E +   K+G N+KYD  +L 
Sbjct: 369 -AAYLPLAHDYLDAPL---------QIDKASALEKLRPILEGDTPQKVGQNLKYDMSILA 418

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GIS++G   D ML SYV +S  S HD+  +A K+L +     +E+       +  +++
Sbjct: 419 NAGISLKGIRFDTMLESYVFNSIASRHDMDGLALKYLGHKNISFEEVAGKGAKQLTFNQV 478

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  V+  L+ P+I V+S +E  G+ ID 
Sbjct: 479 HLDIAGPYAAEDADITLRLHQHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDS 538

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E++K L  LE   Y+++ EKFNL+SPKQL  + F KL +P   KT  G    
Sbjct: 539 MLLSQQSGELAKKLDDLENKAYEIAEEKFNLASPKQLQTLFFEKLGYPIKKKTPKGAPS- 597

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+D+      D P+ K ILE R L+K+KSTY D LP  +N  T RVHT Y  A+  TGR
Sbjct: 598 TAEDVLIELALDYPLPKVILEHRSLAKLKSTYTDKLPLMVNATTGRVHTSYHQANAATGR 657

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L   F 
Sbjct: 658 LSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLTAFA 717

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH+  AAE+FGV+ E+V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI
Sbjct: 718 EGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEAQKYI 777

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    + GYV T+FGRR++  EIN   +  R   ERAAINAP+
Sbjct: 778 DTYFARYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEINDRNAMRRQAAERAAINAPM 837

Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++H+ + +D +    +++Q+HDELVFEV E +  T    +   M +A
Sbjct: 838 QGTAADIIKKAMIAIHQWINQDTQGEITLIMQVHDELVFEVDEAQAETLKTKVCDLMAQA 897

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L V L     + +NW E +
Sbjct: 898 A----SLDVTLLAEAGIGDNWDEAH 918


>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
 gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
          Length = 921

 Score =  930 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/985 (35%), Positives = 525/985 (53%), Gaps = 81/985 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA+YA P L+    G    A+ G  NML  L+         SH AV
Sbjct: 6   ENPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLMSRYH----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN++Y +YKA RP +P+ L  Q+  +     A G+P I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIAPLHRIIHALGLPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  EG A  I + DKD+ QLV+    L +T+ +  +  E V  K+G+ PE ++   
Sbjct: 121 IAKRASAEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVATKFGVGPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  DNIPG+PG+G KTA  +L   G++E +L +   +        K     I++ A
Sbjct: 181 ALMGDKSDNIPGLPGVGEKTALAMLNGVGSVEKLLADPQSVLEVGFRGAKTMPAKIIDNA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  +LS +L  ++TDV +    + L ++  N   LI+    +EF + +  V         
Sbjct: 241 DMLKLSYQLATIKTDVELDPDWDLLAVKPHNKDELIACYGEMEFKRWLAEVLDN------ 294

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                     T +KTS                       E  + 
Sbjct: 295 -----------------------KAPTQVKTS--------------------SNAESDEV 311

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++     +  Y  I+   D+  W+ KL      +    T +++   +K + I+ +    +
Sbjct: 312 MAPVEAISAKYHTILTLDDLDTWIAKLSQAKLIAIDTETTSLNYMDAKLVGISFAIEAGE 371

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+ H   D+          L  L+   E+++  K+G N+KYD  +  
Sbjct: 372 --------AAYLPLA-HDYLDAP-SQIDMATALEKLRPLLESDNPAKVGQNLKYDISIFA 421

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
             GI ++G   D ML SYV +S  S HD+  +A K+L +     +++       +  ++I
Sbjct: 422 NVGIKLKGVHFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEDVAGKGAKQLTFNQI 481

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  +A E++++ L+L   L P+L  E +L  V+  L+ P+I V+S +E  G+ ID 
Sbjct: 482 DLDTAAPYAAEDADITLRLHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGVLIDP 541

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL Q S E+++ +  LE   Y+++GEKFNL SPKQL  + F KL +P   KT  G    
Sbjct: 542 MLLSQQSDELAQKIDKLELEAYEIAGEKFNLGSPKQLQVLFFEKLAYPIIKKTPKGAPS- 600

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA+++      D P+ K IL  R L+K+KSTY D LP  +N  T RVHT Y  A+  TGR
Sbjct: 601 TAEEVLVELALDYPLPKIILAHRSLAKLKSTYTDKLPLMVNGTTGRVHTSYHQANAATGR 660

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+T+ G++IR+AFI+P  +K+++ADYSQIELRI+AH+++   L   F 
Sbjct: 661 LSSSDPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDKGLLTAFA 720

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG + E+V+ + RR AK +NF +IYG+S F LA QL IPR+EA  YI
Sbjct: 721 EGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEAQTYI 780

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ +Y+E+T+    + GYV T+FGRR++  EI    +  R   ERAAINAP+
Sbjct: 781 DTYFARYPGVLQYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPM 840

Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           QG+AADI ++AMI++   ++ + +    M++Q+HDELVFEV E +  T    I   M +A
Sbjct: 841 QGTAADIIKKAMINIANWIKTETQGEITMIMQVHDELVFEVDEAQAETLKAKICLLMAQA 900

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L V L     + NNW E +
Sbjct: 901 A----DLDVTLLAEAGIGNNWDEAH 921


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score =  930 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/983 (34%), Positives = 535/983 (54%), Gaps = 75/983 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    G+  +AI GF N L  +L+        +H AV 
Sbjct: 2   KLFLIDAYALIYRSYYAFIKNPRINSKGVNTSAIFGFINSLEDVLKREN----PTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E +  YKA R + PE++   +P+++   +A+ IP +E+  +EADD+I T 
Sbjct: 58  FDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIP-PEKMV 180
           +  AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+   E+++
Sbjct: 118 SKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L GD+ DNIPG PG+G KTA  LL E+G++EN+L N  ++K   +++ + E AE  
Sbjct: 178 DLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGA-QKKKVEENAEQI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             S+ L  ++TDVPI       + E  N  RL      LEF   IN+++ +    AA   
Sbjct: 237 HFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLS-SEPVKAAPKG 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV  D+                                    +  TP+     +   L+ 
Sbjct: 296 PVQGDL-----------------------------------FAIFTPESTEEPKKSILTD 320

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y      +      + L      +F   TD +D   +  + ++ +  + +   
Sbjct: 321 LKSTPHNYYLTDTEEKQADLARFLLGQEFFAFDTETDGIDPLKAGLVGMSFAVKENE--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +  ++ +          +++       +N   LKIG NIK+D LVL +Y 
Sbjct: 378 -----AWYVPVPANSVE--------AAKVVERFSPALQNPKSLKIGQNIKFDILVLRKYN 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           + + G   D M+  Y+L+     H +  +A+ +L Y     +E++    K+ + +  +  
Sbjct: 425 VKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQLSMRNVPV 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            Q+ E+A E+++V L+L     P+L  E L  ++  ++ P+I V+ +ME TG+ +D   L
Sbjct: 484 EQIAEYAAEDADVTLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTA 654
           KQ S E++ ++  LE+ +Y+L+G +FN++S KQ+G+ILF +LK      KTKTG + T+ 
Sbjct: 544 KQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    +PII  +LE+R L K+ STY D+LP  IN +T ++HT ++ A T TGRL+
Sbjct: 604 DVLEKLRS-KHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQNIP++ DLG++IR+AFI         SADYSQIELRI+AH++    + + F++
Sbjct: 663 STNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIEAFQS 722

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+G+ +EKV+  MRR AKT NF IIYGIS F LA +L IPRSE+ + I 
Sbjct: 723 GADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRSESKELID 782

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P I EY+E++    ++ GYVETIF R+    +INS  + +R   ER AINAPIQ
Sbjct: 783 GYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERNAINAPIQ 842

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ +++  E+  L +KM+LQ+HDEL F + +EE     +I++  ME    
Sbjct: 843 GSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNIYKEEAEEVKKIVLEEMENVM- 901

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL  +     NW E +
Sbjct: 902 ---KLQVPLIADCGEGENWLEAH 921


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/984 (37%), Positives = 554/984 (56%), Gaps = 58/984 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +  HL LVDGS FI+RAF+A P ++   +G+PVNA+ GF  ML +LL    K+ + +H
Sbjct: 32  MTETPHLVLVDGSGFIFRAFHALPPMT-SPEGVPVNAVYGFTTMLARLL----KDHVGTH 86

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR+EIYP YKA+RP+ PE L PQ  L+R ATQAF +P IE+ G+EADD+
Sbjct: 87  LAVLFDASRQTFRSEIYPQYKAHRPEPPEDLRPQFSLIREATQAFNVPGIELPGWEADDL 146

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+Y      +G   TI+S+DKDLMQLV    C+ D +K+  +    V  K+G+PP K+V
Sbjct: 147 IASYATAIRAQGGTCTIVSSDKDLMQLVGDGVCMLDPIKQTPVGPAEVETKFGVPPTKVV 206

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GD  DN+PG+PGIG KTAA L+QEYG LE +L  A  +K+ KRR+ ++E+AE A
Sbjct: 207 DVQALMGDPTDNVPGVPGIGPKTAAALVQEYGTLEAVLNAAPEMKKSKRRDMLIEHAEAA 266

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+S +LV L TDVP+ +P++ L   + +   L  +L  + F  +++R+   +   A    
Sbjct: 267 RVSLQLVTLATDVPLPVPVDELNTREPDMLMLADWLDRMGFRSILSRMGLGHPSGAH--- 323

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                         A                +  +D     ++               S 
Sbjct: 324 --------------AHRAAKKVAAASVAGATTPAADTAPTTDA---------------SV 354

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  +   + +Q+W+   +  G  +    TD +D   +  +  +I+T   K   
Sbjct: 355 LSAPYHDYETVRTAEALQKWISTAQEAGICAVDTETDGLDPLAANIVGFSIATAPGK--- 411

Query: 421 SFKVETIFIDLSVHTSQDST-GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  ++ L    + ++  G+       L  L    +++  LKI HN K+D L+L   
Sbjct: 412 -----ACYVPLKHEGTLEAPTGEQLAVDAALKLLAPLLQDDAVLKIFHNAKFDLLILDHA 466

Query: 480 GISMRGF---EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
           GI +      +D ML+SY   +G     +  ++   L++   T   +  + ++ +P  ++
Sbjct: 467 GIPLSSITAVDDTMLISYSQSAGLHGQGMDELSNLHLNHTPITYDSVTGTGRNRVPFAQV 526

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                 ++A E+++V L+LW +L P L   K L +YE++++P+  +++ ME  GI +D+ 
Sbjct: 527 PVETATKYAAEDADVTLRLWYVLHPTLRTNKALALYEQIERPLSVILADMEKAGIAVDRT 586

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++S +    +  +E +IY+ +G +FN+ SPKQLG+ILF ++    G + K G W T 
Sbjct: 587 ELDRLSKDFEARMQGMENDIYEAAGRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTD 646

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +  L+ +    + +   IL WRQL+K+KSTY D+L      R  RVHT + +A T TGRL
Sbjct: 647 SSVLQDLADQGHDLPARILAWRQLAKLKSTYTDALLRQA-GRDDRVHTSFQMAITSTGRL 705

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++T+ G +IR+AFI+P  KKLISADYSQIELR+LA +A I  L + F+ 
Sbjct: 706 SSTDPNLQNIPVRTEEGTRIRQAFIAPSGKKLISADYSQIELRLLADVANIPALREAFQL 765

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A+E+F + +E +    RR AK INF IIYGIS F L  QL IP  EA  YI 
Sbjct: 766 GQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYID 825

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+PGI +Y+E+ +   R +GYV T FGRR +   I+   ++ R   ER AINAP+Q
Sbjct: 826 AYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQ 885

Query: 894 GSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G AADI +RAM+ +  +L+       +MLLQ+HDEL+FE  E +    ++II + ME A 
Sbjct: 886 GGAADIIKRAMVHLPLALQKAGFGATRMLLQVHDELLFETDESDAEAVAEIIKNVMEAAA 945

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L VPL V   +  NW E +
Sbjct: 946 ----DLAVPLVVETGIGQNWAEAH 965


>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
 gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
          Length = 941

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/988 (34%), Positives = 522/988 (52%), Gaps = 64/988 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKESIA 58
            +  L LVDGSS++YRAF+A P L     G P      AI G  NM+ KL    RK+  A
Sbjct: 4   DKKTLLLVDGSSYLYRAFHAMPDLRVTP-GDPQSPATGAIRGMVNMMQKL----RKDVRA 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +   +FD    TFR+ +YP+YKA R  +P+ L  Q+  +    Q  G   + + G EAD
Sbjct: 59  DYAVCVFDAKGPTFRDALYPEYKAQRSAMPDDLRSQVEPIHEVVQLLGWKVLAVPGVEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T   +A  +   V I S DKDL QLV     + DT+ + + D+  V  ++G+PP  
Sbjct: 119 DVIGTLACMASSQQIEVIISSGDKDLSQLVDEHITVIDTMNDRRRDLAGVEAEFGVPPRL 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           MV  Q L GD++DN+PG+P +G KTA   L EYG+L+ ++  A  IK     EN+ +  +
Sbjct: 179 MVDYQTLVGDTVDNVPGVPKVGPKTAVKWLLEYGSLDALVARAGEIKG-IVGENLRKSLD 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILED------CNGPRLISFLKALEFTKLINRVATTY 292
                R+L+ ++ D  +   ++ L   D           L +F     F  L+ ++    
Sbjct: 238 WLPKGRELLTIKKDCELADYIDGLPAMDSIAIGAQQTSALRTFYLKYGFKGLVGQI---- 293

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             DA N  P                 E+      +  +  + S  +  +  +  P     
Sbjct: 294 --DAENTPP-----------------ELVGGPERRKPRAPTASPDSPGLFDDDEPSL--- 331

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
             L        +N  Y  I+  + + +W+ K+E     +    T ++D   ++ + ++ S
Sbjct: 332 --LDTPLAGRASNLLYETILTWEALDRWLAKIEAAELVAVDTETTSLDEMRAQIVGVSFS 389

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               +          +I L+      S  +     E+L+ LK + EN    K+G NIKYD
Sbjct: 390 VTPGE--------AAYIPLTHDYP--SAPEQLPLDEVLARLKPWLENPARPKLGQNIKYD 439

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSI 528
           + V   +GI ++G+  D ML SYVL+  +  H +AS+A++ +       +++       I
Sbjct: 440 RHVFANHGIEVQGYAHDTMLQSYVLEVTK-PHGLASLAERHVGRSGINYEDLCGKGVHQI 498

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             +++  ++  E++ E+S+  L +  +L P+L   + L    +L+    + + ++E  G+
Sbjct: 499 KFNQVDIARAAEYSCEDSDQTLDVHRVLWPQLQANEKLLFIYQLEMQSSETLYRIERNGV 558

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  +L + S E+ + LL LE   Y+++G+ FNL SPKQL +I F KL      KT +G
Sbjct: 559 LIDAPMLARQSHELGQRLLQLETEAYEMAGQPFNLGSPKQLAEIFFDKLGMKVVKKTPSG 618

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              T    LE++   D+P+   +LE R LSK+K TY D L    N RT RVHT Y+ A  
Sbjct: 619 ARSTDEDVLEKL-AEDHPLPAKLLEHRSLSKLKGTYTDKLAQLANPRTGRVHTHYAQAVA 677

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +TGRL+S +PNLQNIP+KT  G+++R AF++P    + SADYSQIELRI+AHI+    L 
Sbjct: 678 VTGRLSSNDPNLQNIPVKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESLL 737

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F   LD+HR  AAE+FGV +E+VS + RR+AK INF +IYG+S F LA  L I    A
Sbjct: 738 HAFTAGLDVHRATAAEVFGVALEQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAA 797

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           A YI RYF R+PG+  Y++ T+   ++ GYVET+FGRR+   EINSP    R   ERAAI
Sbjct: 798 AAYIDRYFQRYPGVKHYMDSTRQLAKEQGYVETVFGRRLLLPEINSPNGPRRAGAERAAI 857

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QG+AAD+ + +M+ V + L+  K  TKM++Q+HDELVFEVPE E+      I   M
Sbjct: 858 NAPMQGTAADLIKLSMVKVQQVLDAEKRGTKMIMQVHDELVFEVPEAEVEWVRTEIPRLM 917

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
                    L+VPL   I    NW++ +
Sbjct: 918 AGVA----ELKVPLLAEIGFGPNWEQAH 941


>gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92]
 gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92]
          Length = 922

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/983 (34%), Positives = 529/983 (53%), Gaps = 83/983 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L LVDGSS++YRAF+A+     R   G+P  AI    +M+  L+    K+   S  AVI
Sbjct: 11  PLILVDGSSYLYRAFFASQQADLRNSAGIPTGAIRVVTSMMKSLI----KQYPESPVAVI 66

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+EI+ +YKA RP +P+ L  Q+  +    +A G P I  +G EADD+I T 
Sbjct: 67  FDAKGKTFRDEIFSEYKAQRPPMPDDLRSQVEPIHKIIKAMGFPLIVEEGVEADDVIGTM 126

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  +G A  I + DKD+ QLV     L +T+ +  +D+E V  K+GIPPE ++   A
Sbjct: 127 AREASAKGIATLISTGDKDMAQLVDQHVTLINTMTDTVMDVEGVKDKFGIPPELIIDFLA 186

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GD +DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K   + + +  E
Sbjct: 187 LMGDKVDNIPGVPGVGEKTALALLQGIGGLKDLYANLDKIADLGFRGSKSMAKKLEDNRE 246

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV +   +E  +  +    +L+   +  EF   +  +          
Sbjct: 247 AADLSYLLATIKTDVELQESVEDFVKPEPVKEQLLELFEEFEFRSWVKEL---------- 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                         S  S+ S   +  +  + P+          
Sbjct: 297 -----------------------------ESGESAASGTDASDDEPELPEAP-------- 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                ++  Y  +++   + QW++KL T    +F   T +++   ++ + ++ +    K 
Sbjct: 320 -----SDVEYDTVLDEATLDQWLEKLSTAELFAFDTETTSLNYMEAELVGVSFAIEPGK- 373

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V   ++            +    + +L  +K   E+    K+G ++KYD  VL R
Sbjct: 374 AAYVPVAHDYMGAP---------EQITRETLLEKMKPLLESSDHKKVGQHLKYDMNVLAR 424

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI + G   D ML SYVL+S  + HD+ S+A ++L       ++I    K  +  ++I 
Sbjct: 425 YGIELTGIEFDTMLESYVLNSTATRHDMDSLADRYLGLKTIKFEDIAGKGKKQLTFNQIE 484

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E++++ L+L   +  +L   E L  V+  +++P+I V+S +E  G  +D  
Sbjct: 485 LEQAAPYAAEDADITLRLHQAINAQLSKDETLTSVFNDIERPLIPVLSHIERNGALVDAS 544

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L + S E+++ ++ LE   YD++G++FNL+SPKQL  ILF +L  P   KT  G    T
Sbjct: 545 MLGEQSIELAERMVELERQAYDIAGKEFNLASPKQLQQILFEELSIPVIKKTPKGAPS-T 603

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+++ Q    D P+ K ILE R LSK+KSTY D LP  IN  T R+HT Y  A T TGRL
Sbjct: 604 AEEVLQELALDYPLPKLILEHRSLSKLKSTYTDKLPLMINPGTGRIHTSYHQAVTATGRL 663

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++T  G++IR AFI+P   K+++ADYSQIELRI+AH+++   L   F  
Sbjct: 664 SSTDPNLQNIPVRTQEGRRIRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQGLLDAFSK 723

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+F V +++VS   RR AK INF +IYG+S F LA QL I R +AA YI+
Sbjct: 724 GADIHRATAAEVFKVELDQVSDDQRRSAKAINFGLIYGMSAFGLAKQLGIARKDAAQYIE 783

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +PG+  Y++  +   ++ GYVET+FGRR++  EI +  +  R   ER AINAP+Q
Sbjct: 784 HYFETYPGVQHYMDDIRAKAQEQGYVETLFGRRLYLPEIKARNAMRRQAAERTAINAPMQ 843

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAM++V K L +     +M++Q+HDELVFEV + ++ +  + +   M  A  
Sbjct: 844 GTAADIIKRAMVTVDKWLAESDFDVRMIMQVHDELVFEVRDTQVDSFVEAVKDKMATAA- 902

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
              +L VPL V   V  NW++ +
Sbjct: 903 ---DLDVPLLVEAGVGENWEQAH 922


>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
 gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
          Length = 933

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/976 (38%), Positives = 553/976 (56%), Gaps = 63/976 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL L+DGS FI+RAF+A P ++R  DG PVNA+ GF NML + L    K+ + +H AVIF
Sbjct: 16  HLILIDGSGFIFRAFHALPPMTR-PDGTPVNAVFGFTNMLARFL----KDHVGTHLAVIF 70

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRN +YP YKA+RP+ P  L+PQ  L+R AT AFG+PAIE+  +EADD+IA+Y 
Sbjct: 71  DAGRTTFRNRLYPAYKAHRPEPPPELIPQFALIREATAAFGVPAIELADWEADDLIASYA 130

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G  VTI+S+DKDLMQL+ P   + D +K++ I    V++K+G+ PEKM+ +QAL
Sbjct: 131 RAAVTRGGRVTIVSSDKDLMQLIQPGVEMQDPIKQKTIGPAEVMEKFGVTPEKMIDVQAL 190

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L     +K  KRR+N++ +AE AR+SR+
Sbjct: 191 MGDSVDNVPGVPGIGPKTAAQLINEYGDLDGVLAALETMKPSKRRDNLVAHAEDARISRQ 250

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D P+ +P+  L +   +   L  +L A  F     R+                 
Sbjct: 251 LVALSQDAPLPVPITDLSVRQPDAAVLQDWLNAQGFRSTAARLG---------------- 294

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                                      +    +    +        L     L       
Sbjct: 295 -------------------------LETGGSTSPASPAASRTAAAALAAASPLPPSSAPF 329

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  +   + ++ W+ +    G  +    TD +DA   + + I+++    K        
Sbjct: 330 GPYETVTTVEALEPWLTEARKAGLFAMDTETDGLDAQQCRLVGISLAIAPGK-------- 381

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-R 484
             +I L   T+ D   +     EI + L     +   LKI  N K+D  VL R+ + +  
Sbjct: 382 ACYIPLDHQTTLDQPVRQPAIAEIAAALNPILADPTVLKIFQNGKFDLAVLRRHQMPVIA 441

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEH 541
             +D ML+SY  ++G   H +  ++   L ++     ++  + ++ +P  ++   +   +
Sbjct: 442 PIDDTMLISYAQEAGAHGHGMDELSVLHLGHSPISYDQVTGTGRNRLPFPQVPIDKATAY 501

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E+++V L+LW  LRP+L   K L VYE++++P++ V+  ME  GI++D+  L+++SA+
Sbjct: 502 AAEDADVTLRLWHALRPRLRETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRRMSAD 561

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +  +  +E  I+ L+G  FNL+SPKQLG++LF ++      ++KTG W T A  L+ I 
Sbjct: 562 FALRMADMETEIHQLAGRPFNLASPKQLGEVLFDEIGLTGSKRSKTGAWGTDAATLQAIA 621

Query: 662 CG-DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               + +   IL+WRQL+K+KSTYAD+L   +N RT RVHT + +A T TGRL+S EPNL
Sbjct: 622 DESGHALPARILDWRQLAKLKSTYADALVEDVNPRTGRVHTSFQMAITTTGRLSSNEPNL 681

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+T+ G +IRRAFI+ P   LISADYSQIELR+LAH+A I  L   F N  DIH  
Sbjct: 682 QNIPIRTEEGSRIRRAFIADPGHVLISADYSQIELRLLAHVADIPQLKDSFANGEDIHAR 741

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+E+FGV ++ +    RR AK INF IIYGIS F LA  L I   EA  YI  YF R+P
Sbjct: 742 TASEVFGVPMQGMDSLTRRRAKAINFGIIYGISAFGLARSLAISPGEARQYIDAYFARYP 801

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GI +Y+E+TK   R NG+V T FGRR     I     + R   ER AINAP+QG AADI 
Sbjct: 802 GIRDYMERTKEEARINGFVVTPFGRRCWVPGIADRNPARRGYAERQAINAPLQGGAADII 861

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +RAM+ +   L D+   T+MLLQ+HDEL+FE PE E    ++++  +M+ A      + V
Sbjct: 862 KRAMVRLPAVLADNSFQTRMLLQVHDELLFEAPEAEAEAVARLVTTTMQDAA----RISV 917

Query: 961 PLKVNIKVSNNWQEEN 976
           PL V   +  NW E +
Sbjct: 918 PLVVETGIGTNWGEAH 933


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/997 (33%), Positives = 532/997 (53%), Gaps = 52/997 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYRA+YA     R    G   +A+ GF N L ++L+        +H  V
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAVLGFVNTLEEVLKKEN----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I T
Sbjct: 58  AFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-PPEKM 179
               A K G    +++ DKD  QLV     +Y        E + IE V  K+ I  P ++
Sbjct: 118 LATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQI 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K    +  +    + 
Sbjct: 178 IDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGA-LKTKVEANRKM 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ L  ++ DVPIT+ ++ L  E+ N   L    + +EF  LI+RV       A   
Sbjct: 237 IEFSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKSAFAG 296

Query: 300 EPVVLDINTTENKGIAIETEI----DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL--- 352
                  N  + +    E         D + + S F   +       S  +PQ       
Sbjct: 297 TYTDATGNDLQGRNRTPEGSARQGNMPDGSGQLSLFGEPASNGKSPASPSSPQGNLFAEF 356

Query: 353 -------ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
                  E+   L+        Y  I   +   + +Q L T    S    T   D   ++
Sbjct: 357 TNGGTESEKYSNLACLDNLKYDYQLIDTEEKRSELLQNLLTKEIFSLDTETTGTDPITAE 416

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + ++ S  +         +  ++ +    ++         ++I++  +  FE E  LK+
Sbjct: 417 LVGMSFSYAEN--------QAFYVPVPADRTE--------AQKIVNEFRPAFEKEGALKV 460

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
           G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y     +E++
Sbjct: 461 GQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELI 519

Query: 522 K-SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
               K    +  +S   + ++A E+++V L+L  +L  +L       ++  ++ P++ V+
Sbjct: 520 GPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEMPLVPVL 579

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           + +E  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF KL+  
Sbjct: 580 AYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDKLRIV 639

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  INK T ++
Sbjct: 640 EKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKETGKI 698

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+A
Sbjct: 699 HTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMA 758

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS F LA 
Sbjct: 759 HLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAE 818

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ + R EA + I  YF  +P I EY++K+ +  R+ GY+ETIFGR+ +  +INS  S +
Sbjct: 819 RMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVV 878

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL F V  EE   
Sbjct: 879 RGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +I++  ME A     +++VPL+ +    +NW E +
Sbjct: 939 VQKIVIEEMENA----YHMQVPLRADCGWGSNWLEAH 971


>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
 gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
          Length = 948

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/983 (34%), Positives = 523/983 (53%), Gaps = 85/983 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+ + +    A +
Sbjct: 44  MNK--TLLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDHK----ADY 96

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A IFD    TFR+++YPDYK++RP +PE L  Q+  +  A +A G   + I+G EADDI
Sbjct: 97  AACIFDARGKTFRDDLYPDYKSHRPPMPEDLAAQIEPIHQAVRALGWQVLAIEGVEADDI 156

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A   G    + + DKDL QLV     L +T+  E +D   V  K+G+PP+++V
Sbjct: 157 IGTLACQASGMGIRTIVSTGDKDLAQLVDANVTLVNTMSGEVLDETGVRNKFGVPPDRIV 216

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GD+IDN+PG+  +G KTAA  L E+G++++++  A  IK      N+ E     
Sbjct: 217 DYLMLVGDAIDNVPGVAKVGPKTAAKWLAEFGSIDSLVEQADGIKG-VAGNNLREAIGQF 275

Query: 241 RLSRKLVMLRTDVPITIPL---EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            L+R+L+ ++ D  +   +   + L     +   L +  +   F   +  +         
Sbjct: 276 PLTRQLLTVKCDCDLAGHIGGIDDLAPRQPDTDTLQALYERYGFRTWLREL--------- 326

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                       +S++ PQ     R+  
Sbjct: 327 ------------------------------------------TGDSQRVPQ--GDARVIA 342

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +        Y  I +     +W+ +       +    T ++D   +  + I+++     
Sbjct: 343 EAPAAPAELRYLIISSWPAFDEWMAQAADTPLVALDTETTSLDEMQASLVGISMALAPGV 402

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     +I L+ H   DS  +    +E+L  ++ + ++    K+ H+ KYD  V  
Sbjct: 403 --------ACYIPLA-HRGPDS-AEQLPKREVLERMRAWLQDPARPKLLHHAKYDAHVFA 452

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKI 533
             G+++ G  +D ML +YVL+S R    +  +AQ++L     T +E+       I  D++
Sbjct: 453 NEGVALAGIQDDTMLQAYVLESHRGV-GLNDLAQRYLGRGGITYEELCGKGAKQIGFDEV 511

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  Q   +A E+++  LQL   LRP++  +  L    +L+  +  V++ +E  G+++D  
Sbjct: 512 AVEQAGHYACEDADFTLQLHHALRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAA 571

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S  + + +L LE+  Y+L+G+ FNL+SPKQLG+ILF +++ P   KT  G   T 
Sbjct: 572 ELGRQSHRLGQEMLQLEQRAYELAGQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTD 631

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L ++   D P+ + +LE+R LSK+KSTY D LP  IN RT RVHT YS A+ +TGRL
Sbjct: 632 EEVLTRL-AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINARTGRVHTHYSQAAVVTGRL 690

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T+ G+++R AF++     L+SADYSQIELRI+AH++    L Q F  
Sbjct: 691 ASSDPNLQNIPVRTEAGRRVREAFVAEHG-VLVSADYSQIELRIMAHVSDDANLQQAFAA 749

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  A+EIFGV +++V    RR AK INF +IYG+  F LA+ L I R  A  YI 
Sbjct: 750 GKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYID 809

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   RQ GYVET+FGRR+   +I +     R   ERAAINAP+Q
Sbjct: 810 RYFARYPGVAQYMEHTRQLARQQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQ 869

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + AM++V   L+  +LAT+M++Q+HDEL+ EVP+ E+      +   M     
Sbjct: 870 GTAADLIKMAMVAVQDWLDAERLATRMIMQVHDELILEVPDGELDAVRARLPELMCGVA- 928

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL   + V  NW++ +
Sbjct: 929 ---RLRVPLVAEVGVGPNWEQAH 948


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/997 (33%), Positives = 533/997 (53%), Gaps = 52/997 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYRA+YA     R    G   +A+ GF N L ++L+        +H  V
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAVLGFVNTLEEVLKKEN----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I T
Sbjct: 58  AFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-PPEKM 179
               A K G    +++ DKD  QLV     +Y        E + IE +  K+ I  P ++
Sbjct: 118 LATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEIKAKFDIQSPAQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K    +  +    E 
Sbjct: 178 IDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGA-LKAKVETNREM 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ L  ++ DVPIT+ ++ L  E+ N   L    + +EF  LI+RV       A   
Sbjct: 237 IEFSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKSAFAG 296

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQF--------------SSLSDQTSKINSEQ 345
                  N  + +    E    +      S+               +S S     + +E 
Sbjct: 297 TYTDATGNDLQGRNRTPEGSARQGNMPDGSEQLSLFGEPASNGKSPASPSSPQGNLFAEF 356

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           T +    E+   L+        Y  I   +   + +Q L T    S    T   D   ++
Sbjct: 357 TDRGTESEKYSNLACLDNLKYDYQLIDTEEKRSELLQNLLTKEIFSLDTETTGTDPITAE 416

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + ++ S  +         +  ++ +    ++         ++I++  +  FE E  LK+
Sbjct: 417 LVGMSFSYAEN--------QAFYVPVPADRTE--------AQKIVNEFRPAFEKEGALKV 460

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
           G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y     +E++
Sbjct: 461 GQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELI 519

Query: 522 K-SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
               K    +  +S   + ++A E+++V L+L  +L  +L       ++  ++ P++ V+
Sbjct: 520 GPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEMPLVPVL 579

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           + +E  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF KL+  
Sbjct: 580 AYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDKLRIV 639

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  INK T ++
Sbjct: 640 EKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKETGKI 698

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+A
Sbjct: 699 HTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMA 758

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS F LA 
Sbjct: 759 HLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAE 818

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ + R EA + I  YF  +P I EY++K+ +  R+ GY+ETIFGR+ +  +INS  S +
Sbjct: 819 RMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVV 878

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL F V  EE   
Sbjct: 879 RGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +I++  ME A     +++VPL+ +    +NW E +
Sbjct: 939 VQKIVIEEMENA----YHMQVPLRADCGWGSNWLEAH 971


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/980 (36%), Positives = 552/980 (56%), Gaps = 93/980 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     LFL+DGSS+IYRA+YA   LS    G+  NA+ GF  ML K++++   +     
Sbjct: 1   MSSAPRLFLIDGSSYIYRAYYAIRHLSTSQ-GMACNAVFGFTKMLLKVVRDHNPDQ---- 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD    TFR EIY +YKANR K+PE L+PQ+PL++    AF IPA+E+ GFEADDI
Sbjct: 56  LAVIFDAKGPTFRKEIYSEYKANRSKMPEDLVPQIPLIKDVVAAFNIPALEMNGFEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT        G  VT+++ DKDLMQ+VS   CL DT+K+++  +  V +++G  P+K++
Sbjct: 116 IATLARQKSAAGMDVTVVTGDKDLMQVVSDKVCLLDTMKDKQSGLAEVAERFGGTPDKVI 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GDS DN+PG+PGIG KTA  L++E+G++EN+L +  ++K KKR+EN+ E+A+ A
Sbjct: 176 EVQALAGDSSDNVPGVPGIGEKTAKALIEEFGDVENLLAHVDQVKGKKRQENLREFADQA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           RLSR+LV L  D+ ++         + +       L  L                     
Sbjct: 236 RLSRQLVTLVDDMDLSGLPADFARCEQD----REALSEL--------------------- 270

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                     KT +F  L D+ +     +  +            
Sbjct: 271 -------------------------FKTLEFQQLYDEFAVAEPHEQAE------------ 293

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  +  T ++   V  L      S    T +++   ++ +    +        
Sbjct: 294 -----GDYVCVTETAELDAMVAALRQAEVISVDTETTSLNPLLAEVVGFCFAVEPGHG-- 346

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +          +     E+++ ++   E+    K+G N+KYD LVL R G
Sbjct: 347 ------WYVPVGHCGG--GAEEQLPRDEVVAQVQPLLEDATLAKVGQNLKYDALVLRRAG 398

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I++RG   D ML SY+L     SH + ++A   L Y      E+  + K  I  D+++  
Sbjct: 399 IALRGVVADTMLQSYLLYPAARSHGLDALAADHLGYKMISYSEVAGTGKKQIGFDEVALD 458

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +A E++++ LQL+     +L    L  ++E ++ P++ V+  ME  G+++D++ L 
Sbjct: 459 VATRYAAEDADITLQLYQRFDAELDG-TLRELFETVEMPLLQVLIDMEWWGVRVDRERLD 517

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +SA  S ++  LE+ IY+L+GE+FN++SPKQLG ILF KL  P G KTKTG   +TA D
Sbjct: 518 ALSAGFSTSIKQLEQQIYELAGEEFNINSPKQLGVILFEKLDLPHGKKTKTG--WSTAVD 575

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +     + ++  IL++R L+K+K TY D+LP  I+  + R+HT ++ A T TGRL+S 
Sbjct: 576 VLKNLADKHDVVALILQYRSLAKLKGTYTDALPLLIHPDSGRIHTSFNQAVTATGRLSSS 635

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+++ G+ IR AF+    + L++ADYSQIELR++AH+A    L + F    D
Sbjct: 636 DPNLQNIPIRSEEGRAIREAFVPDAGQVLLAADYSQIELRVMAHMADEPILQESFRQGED 695

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH+  A+EIF V  + V  +MRR AKTINF ++YG+  F LA  L I   EA  YI  YF
Sbjct: 696 IHQRTASEIFSVFPDMVDSEMRRRAKTINFGVLYGMGAFSLAKDLGISNKEAKQYIDHYF 755

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P + E+IE+ K F R++ YVET+ GRR    +INS    +R+  ER A+N P+QGSA
Sbjct: 756 ERYPAVLEFIEQQKQFGREHLYVETLLGRRCAVSDINSKNGQVRSYAERNAVNYPVQGSA 815

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ +H+ L+D +L T+M+LQ+HDELVF+VP++E+     ++V  ME+A    +
Sbjct: 816 ADIIKVAMVRIHQRLQDLQLKTRMVLQVHDELVFDVPKDEVDDVVALVVQEMEQA----V 871

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL+V++    NW+E +
Sbjct: 872 ELRVPLEVSLGRGANWREAH 891


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/997 (33%), Positives = 532/997 (53%), Gaps = 52/997 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYRA+YA     R    G   +A+ GF N L ++L+        +H  V
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAVLGFVNTLEEVLKKEN----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I T
Sbjct: 58  AFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-PPEKM 179
               A K G    +++ DKD  QLV     +Y        E + IE V  K+ I  P ++
Sbjct: 118 LATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K    +  +    + 
Sbjct: 178 IDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGA-LKTKVEANRKM 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ L  ++ DVPIT+ ++ L  E+ N   L    + +EF  LI+RV       A   
Sbjct: 237 IEFSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKSAFAG 296

Query: 300 EPVVLDINTTENKGIAIETEI----DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL--- 352
                  N  + +    E         D + + S F   +       S  +PQ       
Sbjct: 297 TYTDATGNDLQGRNRTPEGSARQGNMPDGSGQLSLFGEPASNGKSPASPSSPQGNLFAEF 356

Query: 353 -------ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
                  E+   L+        Y  I   +   + +Q L T    S    T   D   ++
Sbjct: 357 TNGGTESEKYSNLACLDNLKYDYQLIDTEEKRSELLQNLLTKEIFSLDTETTGTDPITAE 416

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + ++ S  +         +  ++ +    ++         ++I++  +  FE E  LK+
Sbjct: 417 LVGMSFSYAEN--------QAFYVPVPADRTE--------AQKIVNEFRPAFEKEGALKV 460

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
           G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y     +E++
Sbjct: 461 GQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELI 519

Query: 522 K-SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
               K    +  +S   + ++A E++++ L+L  +L  +L       ++  ++ P++ V+
Sbjct: 520 GPKGKGQKNMRDLSPEAIYKYACEDADITLKLKNILEQELKTNDAEKLFYEIEMPLVPVL 579

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           + +E  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF KL+  
Sbjct: 580 AYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDKLRIV 639

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  INK T ++
Sbjct: 640 EKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKETGKI 698

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+A
Sbjct: 699 HTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMA 758

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS F LA 
Sbjct: 759 HLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAE 818

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ + R EA + I  YF  +P I EY++K+ +  R+ GY+ETIFGR+ +  +INS  S +
Sbjct: 819 RMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVV 878

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL F V  EE   
Sbjct: 879 RGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +I++  ME A     +++VPL+ +    +NW E +
Sbjct: 939 VQKIVIEEMENA----YHMQVPLRADCGWGSNWLEAH 971


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/997 (33%), Positives = 529/997 (53%), Gaps = 52/997 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYRA+YA     R    G   +A+ GF N L ++L+        +H  V
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAVLGFVNTLEEVLKKEN----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I T
Sbjct: 58  AFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-PPEKM 179
               A K G    +++ DKD  QLV     +Y        E + IE V  K+ I  P ++
Sbjct: 118 LATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K    +  +    + 
Sbjct: 178 IDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGA-LKTKVETNRKM 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ L  ++ DVPI + ++ L  E+ N   L    + +EF  LI+RV       A   
Sbjct: 237 IEFSKFLATIKIDVPIALNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRDKKSAFAG 296

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTS-QFSSLSDQTSKINSEQTPQKLF------- 351
                  N  + +         +  T   S Q S   +  S   S  +P           
Sbjct: 297 TYTDATGNDPQGRNRTPGGSARQGNTPNGSGQLSLFGEPASNGESPASPSSPQGNLFAEF 356

Query: 352 ------LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
                  E+   L+        Y  +   +   + +Q L T    S    T   D   ++
Sbjct: 357 TDGGTESEKYSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTDPITAE 416

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + ++ S  +         +  ++ +    ++         ++I++  +  FE E  LK+
Sbjct: 417 LVGMSFSYAEN--------QAFYVPVPADRAE--------AQKIVNEFRPAFEKEGVLKV 460

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
           G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y     +E++
Sbjct: 461 GQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELI 519

Query: 522 K-SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
               K    +  +S   + ++A E+++V L+L  +L  +L       ++  ++ P++ V+
Sbjct: 520 GPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEMPLVPVL 579

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           + ME  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF KL+  
Sbjct: 580 AYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDKLRIV 639

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  INK T ++
Sbjct: 640 EKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKETGKI 698

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+A
Sbjct: 699 HTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMA 758

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++  T + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS F LA 
Sbjct: 759 HLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAE 818

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ + R EA + I  YF  +P I EY++K+ +  R  GY+ETIFGR+ +  +INS  S +
Sbjct: 819 RMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRYLPDINSRNSVV 878

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL F V  EE   
Sbjct: 879 RGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEK 938

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +I++  ME A      ++VPL+ +    +NW E +
Sbjct: 939 VQKIVIEEMENA----YRMQVPLRADCGWGSNWLEAH 971


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/997 (33%), Positives = 530/997 (53%), Gaps = 52/997 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYRA+YA     R    G   +A+ GF N L ++L+        +H  V
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAVLGFVNTLEEVLKKEN----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I T
Sbjct: 58  AFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-PPEKM 179
               A K G    +++ DKD  QLV     +Y        E + IE V  K+ I  P ++
Sbjct: 118 LATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K    +  +    + 
Sbjct: 178 IDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGA-LKTKVETNRKM 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298
              S+ L  ++ DVPI + ++ L  E+ N   L    + +EF  LI+RV       A A 
Sbjct: 237 IEFSKFLATIKIDVPIALNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRDKKSAFAG 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF------- 351
             P     +          +    +T   + Q S   +  S   S  +P           
Sbjct: 297 TYPDATGNDPQGRNRTPGGSARQGNTPNGSGQLSLFGEPASNGESPASPSSPQGNLFAEF 356

Query: 352 ------LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
                  E+   L+        Y  +   +   + +Q L T    S    T   D   ++
Sbjct: 357 TDGGTESEKYSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTDPITAE 416

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + ++ S  +         +  ++ +    ++         ++I++  +  FE E  LK+
Sbjct: 417 LVGMSFSYAEN--------QAFYVPVPADRAE--------AQKIVNEFRPAFEKEGVLKV 460

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
           G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y     +E++
Sbjct: 461 GQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELI 519

Query: 522 K-SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
               K    +  +S   + ++A E+++V L+L  +L  +L       ++  ++ P++ V+
Sbjct: 520 GPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEMPLVPVL 579

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           + ME  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF KL+  
Sbjct: 580 TYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDKLRIV 639

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  INK T ++
Sbjct: 640 EKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKETGKI 698

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+A
Sbjct: 699 HTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMA 758

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++  T + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS F LA 
Sbjct: 759 HLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAE 818

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ + R EA + I  YF  +P I EY++K+ +  R  GY+ETIFGR+ +  +INS  S +
Sbjct: 819 RMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRYLPDINSRNSVV 878

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL F V  EE   
Sbjct: 879 RGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEK 938

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +I++  ME A      ++VPL+ +    +NW E +
Sbjct: 939 VQKIVIEEMENA----YRMQVPLRADCGCGSNWLEAH 971


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/990 (34%), Positives = 538/990 (54%), Gaps = 52/990 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + LFL+D  + IYR++YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MNSTDKLFLLDAYALIYRSYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + IE +  K+ I  
Sbjct: 117 VIGTLATEAGRQGIITYMMTPDKDYGQLVSDNVFMYRPKHSGGFEVMGIEEIKNKFNIRS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            E+++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 TEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVAEFGSIENLLAHTDQLKGA-LKTKVEA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + +  L+ E+ +  +L    + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKVDVPIKLDMTTLVREEPDEEKLRKIFEELEFRTLIDRVLKKSGAP 295

Query: 296 AANIEPVVLDINTTE--NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            ++    V                   + +  ++   F++ +D  +  N+E +       
Sbjct: 296 LSSSSNSVSPDLYAGTLFARPVDSPTPENNGPVQGDLFANFADNGTG-NAENS------- 347

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
               L+   + +  Y  I   +   + +QKL T    S    T   +   ++ + ++ S 
Sbjct: 348 ---NLTHLEMLDVDYQLIDTEEKRSEIIQKLLTTEILSIDTETTGTEPMEAELVGMSFSN 404

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + +          ++ +  +  +          +I++  +  +ENE+ +K+G NIKYD 
Sbjct: 405 AENR--------AYYVPVPANRDE--------ALKIVNEFRPLYENENSMKVGQNIKYDM 448

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS-RKSSI 528
           +VL  YG+ ++G   D ML  YVL      H++  +A+ +L Y      E++ S  K+  
Sbjct: 449 IVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLRYRTIHIDELIGSRGKNQK 507

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +E  G+
Sbjct: 508 SMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAEHLFYEIEMPLVPVLVNIESNGV 567

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646
           +ID + LKQ S   +  L  +E+ IY L+ GE FN++SPKQ+G++LF KLK      KTK
Sbjct: 568 RIDTEALKQSSEHFTLRLQEIEKEIYALANGETFNIASPKQVGEVLFDKLKIVEKAKKTK 627

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN RT R+HT ++ A
Sbjct: 628 TGQYVTSEEVLESLR-NKHAIIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQA 686

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   
Sbjct: 687 VTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRN 746

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           +   F +  DIH   AA+I+ V+I +V+  MRR AKT NF IIYGIS F LA ++ + R 
Sbjct: 747 MIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISVFGLAERMNVSRQ 806

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA + I  YF  +P I EY++K+    R+NGYVETIF R+    +INS  + +R   ER 
Sbjct: 807 EAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERN 866

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM  +++ ++ + L  KM+LQ+HDEL F VPE E     +I++ 
Sbjct: 867 AINAPIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVPEAEKEIIQKIVIE 926

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME+A      + VPLK +     NW E +
Sbjct: 927 EMERA----YRMLVPLKADFGWGKNWLEAH 952


>gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999]
          Length = 931

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/987 (35%), Positives = 541/987 (54%), Gaps = 71/987 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             E    LVDGSS+++RAF+  P +S    G   +AI G  NML  LL    K    +H 
Sbjct: 4   NSEAPFVLVDGSSYLFRAFHGMPPMSNSQ-GQATHAIYGVINMLKSLL----KTYEPTHI 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD    TFR++IYP+YKANRP +P+ L  Q+  +    +A G+P I     EADD+I
Sbjct: 59  AVVFDAKGKTFRDDIYPEYKANRPPMPDELRSQIAPLHAIIKAMGLPLIVEPNVEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T T  A   G    + + DKD+ QLV     L +T+    +D+  V++K+GI PE ++ 
Sbjct: 119 GTLTKRATALGMKSLVSTGDKDMAQLVDDHVTLINTMNNTLMDVPGVVEKFGIGPELIID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILE 235
             AL GD +DNIPG+PG+G K+A  LLQ  G + +I  N  +I        K   + + E
Sbjct: 179 FLALKGDKVDNIPGVPGVGDKSALGLLQGIGGINDIYNNLDKIATLDFRGAKTMAKKMQE 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + ++ARLS +L  +  D+P+    + L ++D +   L    +  EF +            
Sbjct: 239 HEQSARLSYELATIAIDLPLDYSPDQLSIKDADNNALAELFQTYEFKRW----------- 287

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                 TE+  DT  K     +  +      SE TP        
Sbjct: 288 ---------------------FTEVTGDTFAKAPHNKN--NNNDSPVSESTPANAVTSN- 323

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                  I++  Y  ++    + QW++K  +      +  T +     ++ + I++    
Sbjct: 324 ----TPKIDHTKYDVVLTEAALAQWIEKCSSAPLFGLQTFTSSAHYMEAQIVGISLCVAA 379

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  +I L +H   D+  +   ++  L  L    +N    K+GHN+K+DK V
Sbjct: 380 G--------DACYIPL-LHDYPDAP-EQLNSQWALEQLTPLLKNSKNQKVGHNLKFDKNV 429

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L  +GI++ G   D ML SYVL+S  + H I +++  +L +   T + I       +  +
Sbjct: 430 LANHGITLNGVAYDTMLESYVLNSVVTKHHIEALSLHYLGHSPITLESIAGKGAKQLTFN 489

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I  ++    A EN+++IL+L  LL P+L+   +L +V   L+ P+  V+S+ME TG+ I
Sbjct: 490 QIGLAEAAPFAAENADIILRLHQLLWPQLVNAPELANVVSELEVPLSQVLSRMEQTGVLI 549

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L Q S  +++ +L LEE +++++GE FNL S KQL  ILF K+  P   KT  G  
Sbjct: 550 DSQKLAQQSQSLAERILHLEETVHEMAGEAFNLGSTKQLQHILFEKMNLPVIKKTPKGAP 609

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L+++     P+ K I+E+R L+K+K+TY D LP  I+ RT RVHT Y  A T T
Sbjct: 610 STGEEVLQELALN-YPLPKAIMEYRGLTKLKNTYTDKLPKLIDHRTGRVHTSYQQAITAT 668

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T+ G+K+R AFI+ P  K+++ADYSQIELRI+AH++  + L   
Sbjct: 669 GRLSSTDPNLQNIPIRTEEGRKVREAFIARPGYKIVAADYSQIELRIMAHLSSDSGLLHA 728

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N LD+H+  A+E+FGV +E V+ + RR +K INF +IYG+S F LA QL IPR +A  
Sbjct: 729 FANGLDVHKATASEVFGVALEHVTSEQRRSSKAINFGLIYGMSAFGLAKQLNIPRGDAQH 788

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+ +Y++ T+   +  GYV+T+FGRR++  EI S   + R   ERAAINA
Sbjct: 789 YMDTYFERYPGVLQYMQDTREEAKAQGYVKTVFGRRLYLPEITSSNGARRAGAERAAINA 848

Query: 891 PIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           P+QG+AADI + +M++V   ++   +    M++Q+HDEL+FE+ E+++   S  I+  ME
Sbjct: 849 PMQGTAADIIKLSMLAVDNWIQTQDQSDICMIMQVHDELIFEIKEQKVDAYSTKIIELME 908

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A    ++L VPL V   V  NW++ +
Sbjct: 909 NA----VSLAVPLTVEFDVGENWEQAH 931


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/997 (33%), Positives = 532/997 (53%), Gaps = 52/997 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYRA+YA     R    G   +A+ GF N L ++L+        +H  V
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAVLGFVNTLEEVLKKEN----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +EI G+EADD+I T
Sbjct: 58  AFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEIPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-PPEKM 179
               A K G    +++ DKD  QLV     +Y        E + IE V  K+ I  P ++
Sbjct: 118 LATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K    +  +    + 
Sbjct: 178 IDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGA-LKTKVEANRKM 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ L  ++ DVPIT+ ++ L  E+ N   L    + +EF  LI+RV       A   
Sbjct: 237 IEFSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKSAFAG 296

Query: 300 EPVVLDINTTENKGIAIETEI----DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL--- 352
                  N  + +    E         D + + S F   +       S  +PQ       
Sbjct: 297 TYTDATGNDLQGRNRTPEGSARQGNMPDGSGQLSLFGEPASNGKSPASPSSPQGNLFAEF 356

Query: 353 -------ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
                  E+   L+        Y  I   +   + +Q L T    S    T   D   ++
Sbjct: 357 TDGGTESEKYSNLACLDNLKYDYQLIDTEEKRSELLQNLLTKEIFSLDTETTGTDPITAE 416

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + ++ S  +         +  ++ +    ++         ++I++  +  FE E  LK+
Sbjct: 417 LVGMSFSYAEN--------QAFYVPVPADRTE--------AQKIVNEFRPAFEKEGALKV 460

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
           G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y     +E++
Sbjct: 461 GQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELI 519

Query: 522 K-SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
               K    +  +S   + ++A E+++V L+L  +L  +L       ++  ++ P++ V+
Sbjct: 520 GPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEMPLVPVL 579

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           + +E  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF KL+  
Sbjct: 580 AYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDKLRIV 639

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  INK T ++
Sbjct: 640 EKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKETGKI 698

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+A
Sbjct: 699 HTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMA 758

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS F LA 
Sbjct: 759 HLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAE 818

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ + R EA + I  YF  +P I EY++K+ +  R+ GY+ETIFGR+ +  +INS  S +
Sbjct: 819 RMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVV 878

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAPIQGSAADI + AM+ +++  +   + +KM+LQ+HDEL F V  EE   
Sbjct: 879 RGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +I++  ME A     +++VPL+ +    +NW E +
Sbjct: 939 VQKIVIEEMENA----YHMQVPLRADCGWGSNWLEAH 971


>gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
 gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
          Length = 945

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/993 (38%), Positives = 559/993 (56%), Gaps = 65/993 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++ HL+LVDGS++I+RA++  P L+    G+PV A+ G+  MLWKL ++  K    +H
Sbjct: 1   MDEKQHLYLVDGSAYIFRAYHRLPPLTN-PRGVPVGAVYGYTTMLWKLAEDLHKADGPTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVI D    +FRN++Y  YKANRP  PE L+PQ PL+R AT+AF +  IE    EADD+
Sbjct: 60  LAVILDKAGTSFRNDLYDQYKANRPPPPEDLVPQFPLIRDATRAFSLACIEEDALEADDL 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT------TCLYDTVKEEKIDIEHVIKKWGI 174
           IA+Y   A   G+ VTI+S+DKDLMQLV           + DT+K ++IDI  V++K+G+
Sbjct: 120 IASYARAATLRGWDVTIVSSDKDLMQLVGKCATGGGCIDMLDTMKNQRIDIPEVVEKFGV 179

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           PPEK+  + AL GDS+DN+PGI GIG KTA  L+QE+G+LE+ L  A  +K  K RE+++
Sbjct: 180 PPEKVGDVLALMGDSVDNVPGIRGIGPKTATKLIQEHGDLESALAAAPTMKAGKLRESLI 239

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E AE ARLSR LV L+ D P+ +P+E   L       L +FL+   FT L+ R+      
Sbjct: 240 EQAEMARLSRVLVALKEDCPLPVPIEDFKLGQIPRDPLAAFLEEHGFTSLLRRLDDGKGS 299

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                +                                      +K +++  P      R
Sbjct: 300 PGPKTQL-----------------------------------NPAKPDNKAAPAAPEGNR 324

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
               S    +  +Y  + +  ++QQW+ +       +    T  +DA  +  + ++++  
Sbjct: 325 QALPSWPAPDLSAYACVQSMGELQQWIARAFEARVVAIDTETSALDAMRADLVGVSLALG 384

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                     +  +I L    S     K       E L+ LK   E++  LK+G NIKYD
Sbjct: 385 PN--------DACYIPLGHGGSDMFAEKPLQVDRAEALAALKPLLESDAVLKVGQNIKYD 436

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRS-----SHDIASIAQKWLSY---TRKEILKSR 524
             +L R GI +   +D M+MS+ LD+GRS      H +  ++++ L +     KE+  + 
Sbjct: 437 LNILARQGIMVSPIDDTMVMSFCLDAGRSETGLAGHGMDELSERHLLHTTMKFKELCGTG 496

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K +I   ++  +    +A E+++V  +L  L +P+L  E    +Y+++D+P+I VV+ ME
Sbjct: 497 KKAISFAEVPLADATRYAAEDADVTWRLHRLFQPRLAGEGGTRIYQKVDRPLIPVVAMME 556

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI++D++ L  +S E +  +  LE  I++  G  F + SPKQLG++LF KL +  G K
Sbjct: 557 RNGIKVDRERLSGLSTEFAAQIARLEGVIHEKCGMSFTIGSPKQLGEVLFDKLGYKGGKK 616

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            KTGQ+ T    LE +      +   +LEWRQLSK+KSTY D+L   IN  T RVHT YS
Sbjct: 617 GKTGQYSTDQSVLEGLAAQGAEVATLVLEWRQLSKLKSTYTDALQAAINPHTGRVHTSYS 676

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
           L    TGRL+S EPNLQNIPI+T++G++IR AF++ P   L++ADYSQIELR+ AH+A +
Sbjct: 677 LVGAQTGRLSSNEPNLQNIPIRTEIGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMADV 736

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    DIH   A E+FG     V    R  AKTINF+I+YGIS + L  +L + 
Sbjct: 737 PALKEAFAAGEDIHARTAMEMFGT----VDRDTRGRAKTINFAILYGISRWGLGGRLGVS 792

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA   I RYF RFPGI  YI +T   VR+ GY ET+FGR+  +  I+S   + R  +E
Sbjct: 793 ADEAQAMIDRYFERFPGIQRYIHETLESVRERGYSETLFGRKTWFPRISSKNQAERQGSE 852

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQI 943
           RAAINAPIQG++ADI +RAM  +  +L +  L   +MLLQ+HDELVFE+P+ ++  A  +
Sbjct: 853 RAAINAPIQGTSADIIKRAMARMMPALTEAGLGHVRMLLQVHDELVFELPQGDVEAAKPV 912

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           I   M  A  P + L VPL V I    +W   +
Sbjct: 913 IERVMATAAEPAVKLSVPLGVEIGTGLSWGAAH 945


>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
 gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
          Length = 913

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/983 (36%), Positives = 529/983 (53%), Gaps = 86/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ YPDYKANRP +P+ L  Q+  + +A +A G P + I G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  AEK G  V + + DKDL QLVS    L +T+  EK+D   V+ K+G+PPE++V  
Sbjct: 123 TLSTEAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +Y +L+ I+ +A  IK     +N+    +   +
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTALKWLTQYESLDGIVAHAGEIKGA-VGDNLRRALDFLPM 241

Query: 243 SRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV +     +T  +    E+L     +   L        F   +  V      +   
Sbjct: 242 ARKLVTVERHCDLTDHIASIEENLQSRPESREELRDVFTRHGFKTWLREVEIADAVEGPE 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                           P  L ++R    
Sbjct: 302 T---------------------------------------------DVPPALTVDR---- 312

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +        W+Q++E     SF   T ++D   ++ + ++ +  +   
Sbjct: 313 ------ERHYETVQTWHQFDAWLQRVEAAELTSFDTETTSLDPMTAQIVGLSFAV-EAGH 365

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D  V   +D         E+L+ LK + E+    K+G ++KYD+ VL  
Sbjct: 366 AAYVPVAHRGPDAPVQLPRD---------EVLAKLKPWLESAKHKKVGQHLKYDEQVLAN 416

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI MRG   D +L SYVL+S R  HD+ ++A + L       +++       I  D+++
Sbjct: 417 YGIEMRGIEHDTLLQSYVLESHR-PHDMDNLALRHLGVKTIKYEDVAGKGAQQIGFDEVA 475

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L P+L  EK L HVY  ++ P   V+ +ME TG+ ID +
Sbjct: 476 LDKAAEYAAEDADITLRLHQTLYPQLAAEKTLEHVYRDIEVPTSRVLRKMERTGVLIDAE 535

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+  S+EI+  L+ LE   Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 536 KLRLQSSEIAARLIELESEAYVLAGGEFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTD 595

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 596 EEVLQKL-AEDYPLPKILLEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAVTGRL 654

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F  
Sbjct: 655 ASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQ 714

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 775 RYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V K +E+  + T+M++Q+HDEL+ EVP+EE+    + +   M     
Sbjct: 835 GTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDEELPEVRKRLPELMCGVAA 894

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 895 ----LKVPLVAEVGAGLNWEEAH 913


>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
 gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
          Length = 913

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/983 (36%), Positives = 533/983 (54%), Gaps = 86/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ YPDYKANRP +P+ L  Q+  + +A +A G P + I G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  AEK G  V + + DKDL QLVS    L +T+  EK+D   V+ K+G+PPE++V  
Sbjct: 123 TLSTEAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +Y +L+ I+ +A  IK     +N+    +   +
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTALKWLTQYESLDGIVAHADEIKGA-VGDNLRRALDFLPM 241

Query: 243 SRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV +  +  +T  +    E+L     +   L        F   +  V          
Sbjct: 242 ARKLVTVERNCDLTEHIASIEENLQSRPESREELRDVFTRHGFKTWLREV---------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                              ++D      ++  P           
Sbjct: 292 ----------------------------------EIADAVEGPETDVPPALTVD------ 311

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +   Y  +   +    W+QK+      SF   T ++D   ++ + ++ S  +   
Sbjct: 312 -----HERHYETVQTWEQFDVWLQKINAAEITSFDTETTSLDPMVAQIVGLSFSV-EAGH 365

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D  V   +D         E+L+ LK + E+    K+G ++KYD+ VL  
Sbjct: 366 AAYVPVAHRGPDAPVQLPRD---------EVLAKLKPWLESAEHKKVGQHLKYDEQVLAN 416

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           YGI MRG   D +L SYVL+S R  HD+ ++A + L       +++       I  D+++
Sbjct: 417 YGIEMRGVEHDTLLQSYVLESHR-PHDMDNLALRHLGIKTIKYEDVAGKGAQQIGFDEVA 475

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L P+L  E+ L HVY  ++ P   V+ +ME +G+ ID +
Sbjct: 476 LDKAAEYAAEDADITLRLHQTLYPQLAAEETLEHVYRDIEVPTSRVLRKMERSGVLIDAE 535

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+Q S+EI+  L+ LE   Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T 
Sbjct: 536 KLRQQSSEIATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTD 595

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 596 EEVLQKL-AEDYPLPKILLEHRGLSKLKSTYTDKLPRMVNANTGRVHTNYAQAVAVTGRL 654

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F  
Sbjct: 655 ASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSE 714

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 775 RYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V K +E+  + T+M++Q+HDEL+ EVP+EE++   + +   M     
Sbjct: 835 GTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDEELSDVRKRLPELMCGVAA 894

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 895 ----LKVPLVAEVGAGLNWEEAH 913


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/966 (34%), Positives = 521/966 (53%), Gaps = 71/966 (7%)

Query: 16  IYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           ++RAF+A P L+    G P  A+ G  NM+  L++        S   V+FD    TFRNE
Sbjct: 1   MFRAFHALPPLTNSK-GAPTGAVKGVINMIRSLMKGF----PESRVIVVFDAKGPTFRNE 55

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
           IY +YKANRP +P+ L  Q+  +    +A G+P + + G EADD+I T    A   G   
Sbjct: 56  IYAEYKANRPPMPDDLRVQIEPIHEIIRAMGLPLLIVDGVEADDVIGTLAKQATDSGQDA 115

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            + + DKD+ QLVSP   L +T+    +D + VI+K+GIPPE+++   AL GD +DNIPG
Sbjct: 116 LVSTGDKDMAQLVSPHVTLMNTMTNTTMDRDGVIEKFGIPPERIIDYLALVGDKVDNIPG 175

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           +   G KTA   L+ Y +++ ++ +A  IK  K  E + E   T  +S  L  +R ++ +
Sbjct: 176 VHKCGPKTALKWLEAYDSMQGVIDHAEEIKG-KIGEYLREAVPTLPMSYDLATIRCELEL 234

Query: 256 TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIA 315
              L  +   + +  RL++  K  EF   I  +                           
Sbjct: 235 PQSLAEIQPVEADRERLLALFKDCEFKTWIRELEAGQGA--------------------- 273

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
                  D   + +    ++D ++  +    P                    Y  ++   
Sbjct: 274 ------VDVAEQGASVEPVTDASAVKSDALPP-------------------DYEVVLKQD 308

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
            + +W+ +L      SF   T +++   ++ + ++ +            +  ++ L    
Sbjct: 309 QLDRWLVRLAQFELFSFDTETTSLNYMQAEIVGVSFAVE--------YNKAAYVPLGHDY 360

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSY 494
                 +      +L+ LK   E+    K+G ++KYDK VL RYGI ++G   D ML SY
Sbjct: 361 P--GAPEQLDRDAVLNALKPLLEDTGKAKVGQHLKYDKNVLARYGIELKGIAHDTMLASY 418

Query: 495 VLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
           VL+S    HD+ S+A+++L       ++I       +  ++I   Q   +A E++++ LQ
Sbjct: 419 VLNSVAGRHDMDSLAERYLDRHTVHYEDIAGKGAKQLTFNQIDLEQAAPYAAEDADITLQ 478

Query: 552 LWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           L   L PKL  E  L  VY+ L+ P++DV++++E  G+++D D L   S E+++ +   E
Sbjct: 479 LHRELWPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEGMRQAE 538

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           E  ++ +GE FNL SPKQL  ILF K   P   KT  GQ  T    LE++    +P+ + 
Sbjct: 539 EAAHNEAGESFNLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGHPLPQW 598

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           IL +R LSK+KSTY D LP  I+ +T RVHT Y  A   TGRL+S +PNLQNIPI+++ G
Sbjct: 599 ILRYRALSKLKSTYTDKLPQLIDSKTGRVHTSYHQAVAATGRLSSSDPNLQNIPIRSEEG 658

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           ++IR AF++ P  K+++ADYSQIELRI+AH++    L + F+   DIH+  A+E+FGV +
Sbjct: 659 RRIREAFVAEPGHKILAADYSQIELRIMAHLSGDETLIRAFKEGRDIHQATASEVFGVPL 718

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++V  + RR AK +NF +IYG+S F LA QL I R EA  Y+  YF R+PG+ +Y+E+T+
Sbjct: 719 DEVESEQRRRAKAVNFGLIYGMSAFGLAKQLGISRGEAQGYVDTYFERYPGVRDYMERTR 778

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              R+ GYVET FGRR++  EI S     R   ER AINAP+QG+AADI +RAMI++H +
Sbjct: 779 EQAREQGYVETEFGRRLYLPEIQSRNVPRRQHAERTAINAPMQGTAADIIKRAMIAIHDA 838

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           LE      +M++Q+HDELVFEVPE++      ++   M +A     +LRV L V   +++
Sbjct: 839 LEKELPDVRMVMQVHDELVFEVPEDQAKQTQALVETKMVEAA----DLRVALDVESDIAD 894

Query: 971 NWQEEN 976
           +W   +
Sbjct: 895 SWGAAH 900


>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
 gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
          Length = 952

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/990 (34%), Positives = 535/990 (54%), Gaps = 52/990 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        S
Sbjct: 1   MNSTDKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PS 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A K G    +++ DKD  QLV+    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGKRGITTYMMTPDKDYGQLVADNVFMYRPKHTGGFEVMGVEEVKAKFDIRS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  R+K    +  +  
Sbjct: 177 TAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDRLKGA-LKIKVEN 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPIT+ ++ L+ E+ N   L    + LEF  L++RV    +  
Sbjct: 236 NREMITFSKFLATIKVDVPITLDMKALVREEANEDELRKIFEELEFRTLLDRVLKKGNSP 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDT---TIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             +        +       A + + + D     ++ + F++ +D     +   + +   L
Sbjct: 296 LPSSSTPSASPDLYAGTLFAAQPKTNADEKSGPVQGNLFANFAD-----DGADSSKNSNL 350

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            RL+      + +  Y  I   K  + ++QKL T    S    T   +   ++ + ++ S
Sbjct: 351 TRLE------LLDTDYQLIDTEKKRKDFIQKLITSEILSIDTETTGTEPMEAELVGMSFS 404

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             +         +  ++ +     +          +I++ L+  +ENE  LK+G NIKYD
Sbjct: 405 DAEN--------QAYYVPVPPIREE--------ALKIVNELRPLYENEKSLKVGQNIKYD 448

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS-RKSS 527
            +VL  Y I ++G   D ML  YVL      H++  +A+ +L Y      E++    K+ 
Sbjct: 449 MIVLQNYEIQVKGPLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGPRGKNQ 507

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
             +  +S  +V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +E  G
Sbjct: 508 KNMRDLSPEEVYRYACEDADVTLKLKNILEKELKEQGGEHLFHEIEMPLVPVLVNIESNG 567

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646
           +++D + LKQ S   +  L  +E+ IY L+ E FN++SPKQ+G+ILF KL+      KTK
Sbjct: 568 VRLDTEALKQSSEHFTIRLQEIEKEIYALADETFNIASPKQVGEILFDKLRIVEKAKKTK 627

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ+ T+ + LE +  G + II  ILE+R L K+ STY DSLP  IN RT  +HT ++ A
Sbjct: 628 TGQYVTSEEVLESLR-GKHGIIGKILEYRGLKKLLSTYIDSLPQLINPRTGHIHTSFNQA 686

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   
Sbjct: 687 VTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDRN 746

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           +   F +  DIH   AA+I+  +I  V+  MRR AKT NF IIYGIS F LA ++ + R 
Sbjct: 747 MIDAFRSGYDIHAATAAKIYKTDISDVTADMRRKAKTANFGIIYGISVFGLAERMNVSRQ 806

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA + I  YF  +P + EY++++    R+NGYVETIF R+    +INS  + +R   ER 
Sbjct: 807 EAKELIDGYFETYPQVKEYMDRSIRIARENGYVETIFHRKRFLPDINSRNAVVRGYAERN 866

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM  +H+    + L  KM+LQ+HDEL F VP  E     +I++ 
Sbjct: 867 AINAPIQGSAADIIKVAMAHIHRRFVSNNLKAKMILQVHDELNFSVPASEKEIVQKIVIE 926

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME A     ++ VPLK +     NW E +
Sbjct: 927 EMEHA----YSMHVPLKADCGWGKNWLEAH 952


>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
 gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
          Length = 917

 Score =  927 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/983 (36%), Positives = 522/983 (53%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVRAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++++ DYKANRP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLFVDYKANRPSMPPDLALQIEPIHEAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE  G  V I + DKDL QLV+    L +T+  E +D E VI K+G+PPE++V  
Sbjct: 123 TLARAAEARGMKVVISTGDKDLAQLVTSHVTLVNTMTNELLDREGVIAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +Y  L+ I+ +A+ IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYETLDGIVEHAAEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L     +   L+   +   F      +          
Sbjct: 242 ARKLVTVETACELKPQVESIEASLATGAESRAALLPIFETYGFKTWRRELDA-------- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                      E+   A   E                        +  P    +ER    
Sbjct: 294 ---------MPEDGAAAAAPEGI----------------------DPVPAAAEIER---- 318

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +        W+ K++     SF   T ++D   ++ + +++ T     
Sbjct: 319 --------NYETVQTWAQFDAWLAKIDAAALTSFDTETTSLDPMVAQIVGLSLCTEPGS- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ ++ H   D+  +     E+L+ LK + EN    K+G ++KYD  VL  
Sbjct: 370 -------AAYVPVA-HRGPDAP-EQLPRDEVLAKLKPWLENPARKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           Y I++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YDIALNGVEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                 +A E++++ LQL  ++ P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 480 LDVAAAYAAEDADITLQLHRVMYPQVEREAGLKRVYTEIELPVSFVLRKMERTGVLIDSG 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+  S EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 RLEAQSREIAVRLVELEREAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  IN  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMINASTGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  K++SADYSQIELRI+AHI+    L + F  
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISGDESLLRAFSQ 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVSTDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFARYPGVANYMETTRASAKAQGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE   L ++M++Q+HDELV EVP+ E+    + +   M     
Sbjct: 839 GTAADLIKLSMIAVDGWLERDGLRSRMIMQVHDELVLEVPDAELALVREKLPEMMSGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGTNWEEAH 917


>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
 gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
          Length = 947

 Score =  927 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/992 (34%), Positives = 519/992 (52%), Gaps = 61/992 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M     L L+DGSS++YRA++A P L R   G P      AI G  NML    Q  RKE 
Sbjct: 1   MSNSKTLVLIDGSSYLYRAYHAMPDL-RAEPGNPESPATGAIRGMINML----QAIRKEV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A +   +FD    TFR+ +YP+YKA+R  +P+ L  Q+  +    +  G P + IQG E
Sbjct: 56  AADYAVCVFDTSGPTFRDTLYPEYKAHRSPMPDDLRSQIEPIHEVVRLLGWPVLAIQGVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T    A  +G  V I S DKDL QLV     + DT+  ++ D+  V  ++G+PP
Sbjct: 116 ADDVIGTLAKTAAAQGVNVVISSGDKDLSQLVDSHIMVMDTMSGKRRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +M+  QAL GD++DN+PG+  +G KTA   L E+G+L+ ++  A  IK     +N+ + 
Sbjct: 176 TQMIDYQALVGDAVDNVPGVSKVGPKTAVKWLAEHGSLDGLIAAADGIKG-VAGQNLRDA 234

Query: 237 AE--TARLSRKLVMLRTDVPITIP------LEHLILEDCNGPRLISFLKALEFTKLINRV 288
                  LSR+LV ++TD  ++        L+ L   + +   L  F +   F  L   +
Sbjct: 235 IASGQLALSRQLVTMKTDCDLSAEVPTLPVLDALAPREPDTAPLRDFYERYGFKGLARML 294

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                   A  EP  L+      K  A           K     S  D  ++  +E    
Sbjct: 295 G------GAAPEPDALEAVKAGRKPAA-----------KPRADQSTGDMFAQEQAESDDA 337

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
               E +Q+          Y  ++  +   QW+ K+      +    T ++D   ++ + 
Sbjct: 338 TTEAEAVQQRP------LDYDVVLTWEAFDQWLAKINAAELTALDTETTSLDEMRAEIVG 391

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           I++S               +I L  H   D+  +     E+L  LK + E+    K+G +
Sbjct: 392 ISLSVEPGA--------AAYIPLR-HAGPDAP-EQLPADEVLQRLKPWLEDAARPKLGQH 441

Query: 469 IKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSR 524
           +KYD+ V    GI + G+  D ML SYVL+     H +AS+A +       + +++    
Sbjct: 442 VKYDRHVFANAGIEVHGYVHDTMLQSYVLE-VHRPHGLASLALRHTNRTGISYEDLCGKG 500

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
              IP  ++   +   +A E+++  L +  +L P+L     L     L+    + + ++E
Sbjct: 501 AHQIPFAQVPVDKAAAYACEDADQTLDVHRVLWPQLQANDGLRGVYELEIATSEALFRIE 560

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G+ ID   L + S ++ + ++ LE+  YD++G+ FNL+SPKQLG+I F KL  P   K
Sbjct: 561 RNGVLIDAATLARQSNDLGQRIVQLEQEAYDIAGQPFNLASPKQLGEIFFDKLGMPVVKK 620

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T TG   T  + LE++   D P+   +LE R LSK+K TY D L      RT RVHT Y+
Sbjct: 621 TATGARSTDEEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQLALPRTGRVHTHYA 679

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A  +TGRL+S +PNLQNIPI+T  G+++R AFI+ P   + SADYSQIELRI+AH++  
Sbjct: 680 QAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAAPGHVIASADYSQIELRIMAHLSGD 739

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    D+HR  A+E+F V +E+VS + RR+AK INF +IYG+S F LA  L I 
Sbjct: 740 ESLLRAFHEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIE 799

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
              AA YI RYF R+PG+  Y+++T  F R +GYVET+FGRR++  +IN      +   E
Sbjct: 800 TKAAAAYIDRYFQRYPGVKRYMDETVEFARDHGYVETVFGRRLYLVDINGGSGPRKKAAE 859

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AINAP+QG+AAD+ ++AM++V   L+  +   ++++Q+HDELVFE+PE E       I
Sbjct: 860 RQAINAPMQGTAADLIKKAMVAVQAELDARQSEVRVIMQVHDELVFELPEGESDWVRTEI 919

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              M        +L+VPL   + +  NW + +
Sbjct: 920 PRLMAGVA----DLKVPLLAEVGLGPNWDKAH 947


>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
 gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
          Length = 937

 Score =  927 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/992 (34%), Positives = 529/992 (53%), Gaps = 71/992 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A        DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNKPTLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGAMYGVLNMLRRL----RADYVHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++ 
Sbjct: 117 IGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKG-KVGENLRAALPRL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHTELSDGIESLRRTAPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPSERLPEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----VAPEKLDYQAVTTEAQFAAVLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    SQ +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGH--SQTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQISFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +PP   ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I++  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHK------LATKMLLQIHDELVFEVPEEEITTASQII 944
           P+QG+A+D+ +RAMI V + L + +      L +K+++Q+HDELV EVPE E+    + +
Sbjct: 848 PMQGTASDLIKRAMIDVSRWLSECEASLWDCLKSKLIMQVHDELVLEVPEAELDLVKEKL 907

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              M K       L VPL   +    NW+E +
Sbjct: 908 PQIMAKVDEGM--LNVPLVAEVGAGMNWEEAH 937


>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
 gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
          Length = 917

 Score =  927 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/983 (36%), Positives = 525/983 (53%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 123 TLAREAEQRGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LALIGDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            RKLV + T   +   LE     L  +      L        F   +  V      D+A 
Sbjct: 242 GRKLVTVDTACDLAPHLESIEASLKTDGEARDLLRDIFARYGFKTWLREV------DSAP 295

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E    D    E    A+ T+I R+                                   
Sbjct: 296 PEGGGADARDGEP-APAVATDIVRE----------------------------------- 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I        W  K++     +F   T ++D   ++ + ++ S    K 
Sbjct: 320 ---------YETIQTWAQFDAWFAKIDAAALTAFDTETTSLDPMTARLVGLSFSVEPGK- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     DL          +     ++L+ LK + E     K+G ++KYD  VL  
Sbjct: 370 AAYLPVAHRGPDLP---------EQLPLDDVLARLKPWLEAADRKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           Y I++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YDIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E++++ LQL  +L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 480 LDQAAAYAAEDADITLQLHHVLYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDA 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL   S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 LLHAQSNEIATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS EPNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F +
Sbjct: 659 ASNEPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAH 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFARYPGVAQYMEDTRAAAKDQGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   +LA++M++Q+HDELV EVP++E++   + +   M     
Sbjct: 839 GTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGANWEEAH 917


>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2]
 gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
          Length = 886

 Score =  927 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/935 (35%), Positives = 517/935 (55%), Gaps = 63/935 (6%)

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           ++  +   AVIFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+
Sbjct: 3   RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIE 62

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD+I T    A + G  V I + DKD+ QLV     L +T+    +D E VI+K+G
Sbjct: 63  GVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFG 122

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQK 227
           IPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K
Sbjct: 123 IPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSK 182

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
              + + E  + A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  
Sbjct: 183 TMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTE 242

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +                                        +   +  +QT   +   + 
Sbjct: 243 LLDG------------------------------------GTGVVTADEQTKTSSVTVST 266

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                  + +     I+   Y  I+N +D Q W++KL+     +F   TD +D   +  +
Sbjct: 267 AASHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLV 326

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            ++ +  +  +     V   ++D      +D          +++ LK   E+E   K+G 
Sbjct: 327 GMSFAVAEG-EAAYLPVAHDYLDAPQQLERD---------WVIAQLKPLLEDESKAKVGQ 376

Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKS 523
           N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++    +++   
Sbjct: 377 NLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGK 436

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQ 582
            K+ +  ++I+  +  ++A E+++V L+L   + P +  + KL  VY  ++ P++ V+S+
Sbjct: 437 GKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSR 496

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E TG+ ID  LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  ILF ++K P  
Sbjct: 497 IERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVL 556

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT +G   T  + L+++   D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT 
Sbjct: 557 QKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTS 615

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++
Sbjct: 616 YHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 675

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L   F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL 
Sbjct: 676 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLG 735

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R  
Sbjct: 736 IPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKA 795

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTAS 941
            ERAAINAP+QG+AADI ++AM+ V + +E       K+L+Q+HDELVFEV E  ++   
Sbjct: 796 AERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIE 855

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +   ME A      L VPL  +    +NW + +
Sbjct: 856 SKVQQLMESAA----ELAVPLVADAGHGDNWDQAH 886


>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
 gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
          Length = 890

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/945 (35%), Positives = 526/945 (55%), Gaps = 67/945 (7%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           M+  +++    +      AVIFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +
Sbjct: 1   MIRSMMRQFASDR----MAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIR 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI 163
           A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV     L +T+    +
Sbjct: 57  AMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVL 116

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +
Sbjct: 117 DREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDK 176

Query: 224 I------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           I        K   + + E    A+LS +L  ++ DV +    + L+ +  +   L+S   
Sbjct: 177 IAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYG 236

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
            L F   +  +                           ++      T  + ++ SS++  
Sbjct: 237 KLAFKSWLTEL---------------------------LDGGTGIVTADEQTKTSSVTVS 269

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
           T+  ++   P+              I+   Y  I+N +D Q W++KL+     +F   TD
Sbjct: 270 TAATHAAAIPE---------SPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETD 320

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
            +D   +  + ++ +  +  +     V   ++D      +D          +++ LK   
Sbjct: 321 NLDYMVANLVGMSFAVAEG-EAAYLPVAHDYLDAPQQLERD---------WVIAQLKPLL 370

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++
Sbjct: 371 EDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHS 430

Query: 517 ---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERL 572
               +++    K+ +  ++I+  +  ++A E+++V L+L   + P +  + KL  VY  +
Sbjct: 431 CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREI 490

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P++ V+S++E TG+ ID  LL   S EI+  L  LE+N Y+L+G+ FNLSSPKQL  I
Sbjct: 491 EMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTI 550

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+KSTY D LP  I
Sbjct: 551 LFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMI 609

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQ
Sbjct: 610 NPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 669

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR AK +NF +IYG+
Sbjct: 670 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGM 729

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI
Sbjct: 730 SAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEI 789

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFE 931
            S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E       K+L+Q+HDELVFE
Sbjct: 790 TSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFE 849

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           V E  ++     +   ME A      L VPL       +NW++ +
Sbjct: 850 VKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQAH 890


>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
 gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
          Length = 936

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/983 (33%), Positives = 534/983 (54%), Gaps = 66/983 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS--RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             ++ L LVDGSS+++RA++  P L      DG P  AI G  NM   L    +K+    
Sbjct: 12  NSQSPLILVDGSSYLFRAYH-VPYLQALSTADGQPTGAITGVLNMFRSL----KKDYPNG 66

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           +   IFD    TFRN+++P+YKANRP +P+ L  Q+  +     A G+P + I G EADD
Sbjct: 67  NIIAIFDAKGKTFRNDMFPEYKANRPPMPDDLRTQIAPIHEIITAMGLPLLVIPGVEADD 126

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T    A++ G    I + DKD+ QLV+    L +T+ + ++D+  V +K+G+ P+++
Sbjct: 127 VIGTLAKQADELGIETVISTGDKDMAQLVTKHVRLINTMTDVEMDVAGVSEKFGVRPDQI 186

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           +   AL GD +DNIPG+   G KTA   L E+G ++ ++ NA ++K  K  EN+ +  E 
Sbjct: 187 IDYLALMGDKVDNIPGVVKCGPKTAVKWLAEHGTMQEVIANADKVKG-KIGENLRDALEQ 245

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             LS +L  ++ DV +      L   + +   L    +  E  +L+  +        A+ 
Sbjct: 246 LPLSYQLATIKCDVELEQTAGELAASEPDVDALAELYQKFELKRLLADLGKGGSDVGAST 305

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             V                        K    +S+ +Q  +I +                
Sbjct: 306 SSVAKK--------------------TKADSTASVGEQAVEIKA---------------- 329

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              +    Y  I++ +  +QW++KL+   S +F   T ++    ++ + ++ +    K  
Sbjct: 330 -VDVEKTQYDIILDKELFEQWLKKLQACESFAFDTETTSVHYMKAELVGVSFAIEVGK-- 386

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ L+ H  +D+  +    + +L+ LK   E++   KIG N+KYD  VL  Y
Sbjct: 387 ------AAYVPLT-HDYEDAP-EQLDKEWVLAQLKPLLESKTIKKIGQNLKYDANVLSHY 438

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535
            I+++G   D M+ SY  +S  + H++ ++A K+L Y     +++       +  ++I  
Sbjct: 439 DIALQGIEFDTMIESYCYNSVATRHNMDALALKYLDYQTVHFEDVAGKGAKQLTFNQIDI 498

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            +   +A E++++ L+L   + P L     +L V+  ++ P++ V+++ME TG+ ID D+
Sbjct: 499 EKAGHYAAEDADITLRLHHAIFPALAETASMLSVFNEIEMPLLPVLARMEQTGVLIDSDI 558

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L + S  + + L  LE   ++L+G+ FNL+SPKQL  ILF  LK P   KT  G    TA
Sbjct: 559 LAEQSFTLGQRLDELEIEAHNLAGKSFNLASPKQLQQILFEDLKIPVIKKTPKGAPS-TA 617

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +++ Q    D P+ K ILE R LSK+KSTY D LP  ++ +T R+HT Y  A T TGRL+
Sbjct: 618 EEVLQELALDYPLPKVILENRGLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAVTATGRLS 677

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+++ G+KIR+AFI+P   K+++ DYSQIELRI+AH++    L   F   
Sbjct: 678 STDPNLQNIPIRSEQGRKIRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKGLVTAFSEG 737

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AAEIF V + +V+   RR AK INF +IYG+S F LA QL I R +A +Y  +
Sbjct: 738 KDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMSAFGLAKQLHIGRQQAQEYQDK 797

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y+E T+    + GYVET++GRR++  +IN+     +   ERAAINAP+QG
Sbjct: 798 YFQRYPGVLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNGMRKKAAERAAINAPMQG 857

Query: 895 SAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           +AADI ++AM++V   L +      KM +Q+HDEL+FE+ ++ +   +  +V  M  A  
Sbjct: 858 TAADIIKKAMLAVDSWLLEQNDDRIKMTMQVHDELIFEIHQDIVEETTAKLVTLMNDA-- 915

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
             + L VPL     + +NW E +
Sbjct: 916 --VELSVPLIAEAGIGDNWDEAH 936


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/990 (34%), Positives = 538/990 (54%), Gaps = 52/990 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + LFL+D  + IYR++YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MNSTDKLFLLDAYALIYRSYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + I+ +  K+ I  
Sbjct: 117 VIGTLATEAGRQGIITYMMTPDKDYGQLVSDNVFMYRPKHSGGFEVMGIDEIKAKFNIRS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            E+++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 TEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVAEFGSIENLLAHTDQLKGA-LKTKVEA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + +  L+ E+ +  +L    + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKVDVPIKLDMTTLVREEPDEEKLRKIFEELEFRTLIDRVLKKSGAP 295

Query: 296 AANIEPVVLDINTTE--NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            ++    V                   + +  ++   F++ +D  +  N+E +       
Sbjct: 296 LSSSSNSVSPDLYAGTLFARPVDSPTPENNGPVQGDLFANFADNGTD-NAENS------- 347

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
               L+   + +  Y  I   +   + +QKL T    S    T   +   ++ + ++ S 
Sbjct: 348 ---NLTHLEMLDVDYQLIDTEEKRSEIIQKLLTTEILSIDTETTGTEPMEAELVGMSFSN 404

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + +          ++ +  +  +          +I++  +  +ENE+ +K+G NIKYD 
Sbjct: 405 AENR--------AYYVPVPANRDE--------ALKIVNEFRPLYENENSMKVGQNIKYDM 448

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS-RKSSI 528
           +VL  YG+ ++G   D ML  YVL      H++  +A+ +L Y      E++ S  K+  
Sbjct: 449 IVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLRYRTIHIDELIGSRGKNQK 507

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +    V  +A E+++V L+L  +L  +L  +   H++  ++ P++ V+  +E  G+
Sbjct: 508 SMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAEHLFYEIEMPLVPVLVNIESNGV 567

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646
           +ID + LKQ S   +  L  +E+ IY L+ GE FN++SPKQ+G++LF KLK      KTK
Sbjct: 568 RIDTEALKQSSEHFTLRLQEIEKEIYALANGETFNIASPKQVGEVLFDKLKIVEKAKKTK 627

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN RT R+HT ++ A
Sbjct: 628 TGQYVTSEEVLESLR-NKHAIIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQA 686

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   
Sbjct: 687 VTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRN 746

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           +   F +  DIH   AA+I+ V+I +V+  MRR AKT NF IIYGIS F LA ++ + R 
Sbjct: 747 MIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISVFGLAERMNVSRQ 806

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA + I  YF  +P I EY++K+    R+NGYVETIF R+    +INS  + +R   ER 
Sbjct: 807 EAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERN 866

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM  +++ ++ + L  KM+LQ+HDEL F VPE E     +I++ 
Sbjct: 867 AINAPIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVPEAEKEIIQKIVIE 926

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME+A      + VPLK +     NW E +
Sbjct: 927 EMERA----YRMLVPLKADFGWGKNWLEAH 952


>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
 gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
          Length = 926

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/984 (34%), Positives = 530/984 (53%), Gaps = 66/984 (6%)

Query: 1   MQKEN--HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M +++   + LVDGSS+++RA++A P L    +  P  AI G   M+ +L      +   
Sbjct: 1   MTEQHTPPVVLVDGSSYLFRAYHALPPLMTSKN-HPTGAIKGVIAMIRRL----DLDFPG 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           S   V+FD    TFRN++YPDYKANRP +PE L  Q+  +    +  G+P + + G EAD
Sbjct: 56  SKIVVVFDAKGKTFRNDLYPDYKANRPPMPEDLAVQIEPIHQIVRHMGLPLLIVDGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T  + A  +G  V + + DKD+ QLVS    L +T+    +D   V +K+G+ P +
Sbjct: 116 DVIGTLAHEATSKGIDVVVSTGDKDMAQLVSAHVTLINTMTNTYMDNAGVEEKFGVTPAQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++   AL GD +DNIPG+   G KTA   LQEY N++N++ NA  IK  K  E + +  E
Sbjct: 176 IIDYLALVGDKVDNIPGVNKCGPKTAVKWLQEYQNIDNLMANADDIKG-KVGEYLRDARE 234

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           T  LSR L  ++ DV +   LE L   + N   L+   +  E    +N +          
Sbjct: 235 TLPLSRTLATIKLDVELEFGLEDLQEREQNNSALLELFREYELRSWVNELE--------- 285

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                           +++ +       K+    S SD  +   S  +P +    R +  
Sbjct: 286 ----------------SLDPQTTGPAVAKSGADHSTSDHNTAHQS--SPAESAQPRDKH- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y+ I N  ++ +WV++L+     +F   T ++    ++ + ++ +     +
Sbjct: 327 ---------YSIITNQAELDEWVERLKASELFAFDTETTSLRYMAAEVVGVSFAVQP-FE 376

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++       +D+         +L+ LK   E+    K+G N+KYDK VL  
Sbjct: 377 AAYVPFCHDYMGAPEQLDRDT---------VLAQLKPLLESPDHKKVGQNLKYDKNVLAN 427

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534
           + I + G   D M+ SYVL+S  S H++ ++A  +L     T + +       +  +++ 
Sbjct: 428 HDICLEGIAEDTMVQSYVLNSVSSRHNMDALALHYLGEETTTFESLAGKGAKQLTFNQLE 487

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +   +A E++++ L+L   LRP+L    KL  VYE +D P++ V+S+ME  G  I   
Sbjct: 488 LDKAGPYAAEDADITLRLHQALRPQLAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISAS 547

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+Q S E+++ +  LE   Y+ +GE FNL SPKQL  I + KL  P   KT  G    T
Sbjct: 548 TLRQHSQELAERMAELETAAYEAAGETFNLGSPKQLQVIFYEKLGLPVLKKTPKGAPS-T 606

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+ + Q     + + + +LE R LSK+KSTY D+LP  I+ RT RVHT Y  A T TGRL
Sbjct: 607 AEPVLQELAHRHELPRLLLEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRL 666

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIPI+++ G++IR+AF++    KL++ADYSQIELRI+AH+++   L   F  
Sbjct: 667 SSSEPNLQNIPIRSEQGRRIRQAFVAEKGYKLLAADYSQIELRIMAHLSEDKGLLTAFAK 726

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH+  AAE+FGV +E+V+   RR AK INF +IYG+S F LA QL + R  A  YI 
Sbjct: 727 GEDIHKATAAEVFGVTLEEVNTDQRRSAKAINFGLIYGMSAFGLARQLDVERKVAQQYID 786

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y++  +    ++GYVET+FGRR++  EIN+    ++   ER AINAP+Q
Sbjct: 787 RYFERYPGVLTYMDNIRKQAHEDGYVETLFGRRLYLPEINTRNKQLQQAAERTAINAPMQ 846

Query: 894 GSAADITRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           G+AADI + AMI V +  L ++  + +M +Q+HDEL+ EV EE +    + ++  M  A 
Sbjct: 847 GTAADIIKLAMIEVERWLLAEYPDSARMTMQVHDELIIEVKEEAVEVVREGLIKRMSGAA 906

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V   V +NW + +
Sbjct: 907 ----ELAVPLLVEAGVGDNWDQAH 926


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/997 (33%), Positives = 527/997 (52%), Gaps = 52/997 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYRA+YA     R    G   +A+ GF N L ++L+        +H  V
Sbjct: 2   DKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAVLGFVNTLEEVLKKEN----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I T
Sbjct: 58  AFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-PPEKM 179
               A K G    +++ DKD  QLV     +Y        E + IE V  K+ I  P ++
Sbjct: 118 LATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L GDS DNIPG PG+G KTA  L+ +YG++EN+L +++ +K    +  +    + 
Sbjct: 178 IDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGA-LKTKVETNRKM 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ L  ++ DVPI + ++ L  E+ N   L    + +EF  LI+RV       A   
Sbjct: 237 IEFSKFLATIKIDVPIALNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRDKKSAFAG 296

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTS-QFSSLSDQTSKINSEQTPQKLF------- 351
                  N  + +         +  T   S Q S   +  S   S  +P           
Sbjct: 297 TYTDATGNDPQGRNRTPGGSARQGNTPNGSGQLSLFGEPASNGESPASPSSPQGNLFAEF 356

Query: 352 ------LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
                  E+   L+        Y  +   +   + +Q L T    S    T   D   ++
Sbjct: 357 TDGGTESEKYSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDTETTGTDPITAE 416

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + ++ S  +         +  ++ +    ++         ++I++  +  FE E  LK+
Sbjct: 417 LVGMSFSYAEN--------QAFYVPVPADRAE--------AQKIVNEFRPAFEKEGVLKV 460

Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521
           G NIKYD LVL  YG  +RG   D M+  YVL      H++  +A+ +L Y     +E++
Sbjct: 461 GQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELI 519

Query: 522 K-SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
               K    +  +S   + ++A E+++V L+L  +L  +L       ++  ++ P++ V+
Sbjct: 520 GPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEMPLVPVL 579

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           + ME  G+++D + LKQ S   +  +  +EE ++ L+G  FN++SPKQ+G++LF KL+  
Sbjct: 580 AYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDKLRIV 639

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KTKTGQ+ T+ + LE +  G + I+  ILE R L K+  TY D+LP  INK T ++
Sbjct: 640 EKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKETGKI 698

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+A
Sbjct: 699 HTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMA 758

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    + + F+   DIH   AA+++ ++I+KV+ + R  AKT NF IIYGIS F LA 
Sbjct: 759 HLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAE 818

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ + R EA + I  YF  +P I EY++K+ +  R  GY+ETIFGR+ +  +INS  S +
Sbjct: 819 RMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRYLPDINSRNSVV 878

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ER AINAPIQG AADI + AM+ +++  +   + +KM+LQ+HDEL F V  EE   
Sbjct: 879 RGYAERNAINAPIQGGAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEK 938

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +I++  ME A      ++VPL+ +    +NW E +
Sbjct: 939 VQKIVIEEMENA----YRMQVPLRADCGWGSNWLEAH 971


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/960 (35%), Positives = 523/960 (54%), Gaps = 83/960 (8%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           R   G P  A+ G   ML +LL     +   S  AVIFD    TFR+E++ DYKA RP +
Sbjct: 7   RNSAGEPTGAVRGVTAMLRRLLA----DYPDSPIAVIFDAKGKTFRDELFEDYKAQRPPM 62

Query: 88  PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           P+ L  Q+  +    +A G+P + I G EADD+I T+   A ++G  V I + DKD+ QL
Sbjct: 63  PDDLRSQVQPIHDIIKAMGLPLLVIDGVEADDVIGTFARQATEKGLDVVISTGDKDMAQL 122

Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
           V+    L +T+ E  +D + V +K+G+PPE ++   AL GD +DNIPG+PG+G KTA  L
Sbjct: 123 VNQHVTLVNTMTETTLDPDGVKEKFGLPPELIIDFLALMGDKVDNIPGVPGVGEKTALAL 182

Query: 208 LQEYGNLENILINASRI------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           +Q  G++++I  +   +        KK  E + E  + A LS  L  ++ DV + I +E 
Sbjct: 183 IQSLGSIKDIYQDLEAVRSLDFRGAKKMPEKLAENKDMAELSYLLATIKCDVELDIDIEA 242

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
           +  ++ +   L++  K +EF   IN + +                               
Sbjct: 243 IKNQEQDTQSLLTLFKQMEFRSWINELESV------------------------------ 272

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
                         + T+ + +  TP      R Q           Y  I+N +  Q W+
Sbjct: 273 --------------NSTTVVTAASTPVNDHTTREQ----------DYHTILNEQQWQDWL 308

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           +KL      +F   T ++D   ++ + ++ +     +     +   +         D+  
Sbjct: 309 KKLNEAKLFAFDTETTSLDYLEARIVGVSFAVKAG-EAAYLPLNHDYPGAPDQLDFDA-- 365

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR 500
                  +++ LK   E+   LK+G N+KYD+ VL  + I+++G   D ML SYVLDS  
Sbjct: 366 -------VMADLKPLLEDPTKLKVGQNLKYDRHVLLNHDINLQGIAHDTMLESYVLDSTA 418

Query: 501 SSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           + HD+ S+A+K+L       ++I    K  +  ++I   +   +A E++++ LQL   L 
Sbjct: 419 TRHDMDSLAKKYLDRDTIHFEDIAGKGKKQLTFNQIGLEEAAPYAAEDADITLQLHETLW 478

Query: 558 PKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           P++     L+ VY  L+ P++ V++ +E  G+ ID  +L+  S  ++  +  LE+  ++ 
Sbjct: 479 PRIQAIPSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQIAELEKQAHES 538

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +G+ FNL SPKQL +IL+ K + P   KT  GQ  T  + L+ +      + + I+++R 
Sbjct: 539 AGQTFNLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEEVLQGLADDGYELPQIIMQYRG 598

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           LSK+KSTY D LP  +NK + RVHT Y  A T TGRL+S +PNLQNIPI+++ G++IR A
Sbjct: 599 LSKLKSTYTDKLPLQVNKSSGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSENGRRIREA 658

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F++     L++ADYSQIELRI+AH++    L + F    DIHR  A+EIF + +E VS  
Sbjct: 659 FVASNGYTLLAADYSQIELRIMAHLSGDESLLKAFAAGEDIHRHTASEIFDIALEDVSSD 718

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            RR AK INF +IYG+S   L+ QL I R +AADY++ YF R+PG+ +Y++ T+   ++ 
Sbjct: 719 QRRSAKAINFGLIYGMSAHGLSKQLGIERHQAADYMQTYFDRYPGVRQYMDNTREQAKEQ 778

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYVETIFGRR++  EINS     R   ER AINAP+QGSAADI +RAMI++H  L +   
Sbjct: 779 GYVETIFGRRLYLPEINSSNGMRRQYAERTAINAPMQGSAADIIKRAMIAIHSWLSEADT 838

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +M++Q+HDELVFEVP E++  A   I   M  A      L+VPL+V I V +NW++ +
Sbjct: 839 GIRMIMQVHDELVFEVPLEQLDMAKDTIEKFMMGAA----ELKVPLEVGIGVGDNWEQAH 894


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1]
          Length = 911

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/981 (34%), Positives = 539/981 (54%), Gaps = 75/981 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  LFL+DGS ++YRAF+    L+R  DG P NAI GF  ML K++++ + +     
Sbjct: 1   MTTQ-RLFLIDGSGYLYRAFFGVRNLTR-RDGFPTNAIFGFIKMLRKVIEDEKPDF---- 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD  A TFR+ +   YKANR  +P+ L  Q+P++     AF IP I ++G+EADDI
Sbjct: 55  VTIAFDTKAPTFRHTMDAQYKANRKPMPDELRVQIPVIHDVIDAFNIPRIALEGYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T+  +    G  V ++S DKDLMQL++P   ++D  K++    E V++ WG+  E++ 
Sbjct: 115 IGTFARLGCAAGVEVVVVSGDKDLMQLITPQVKMFDGSKDKWYGPEDVVESWGVAAERIP 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L GD+ DNIPG+ GIG KTAA L+ E+G+LE +L  A RIKQ KRR  +LE A+TA
Sbjct: 175 DLLGLAGDTSDNIPGVGGIGPKTAAQLIAEFGSLEGVLHGAERIKQPKRRTALLEQADTA 234

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R S +L  +  +VP+   L+   ++  N  RL    + + F  L            +   
Sbjct: 235 RRSLQLATINREVPLPFDLQGARMQRPNWARLREIYQDMSFATLAREAEKQLQALGSEAA 294

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P +                                                  +++   +
Sbjct: 295 PSI--------------------------------------------------QIETQPE 304

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              N  +Y  I +    Q ++++L+ +   +    T  +    ++ + I+I+        
Sbjct: 305 SLPNQPNYQVITSEAAFQAFMEQLKGLPRFAVDTETTDLHPHSAELVGISIAWQP----- 359

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              +   +I +  H    +        ++L+ LK   E+    K G NIKYD  +  RY 
Sbjct: 360 ---MVAYYIPVG-HALDAAPEGQLPRADVLAALKPLLESPEIGKTGQNIKYDYQIFKRYH 415

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           I+M+G E D ML SY+L     +H++ +IA + L       +++    +  I  D++   
Sbjct: 416 ITMQGIERDSMLYSYLLYGANRAHNLDAIATEELGRTTIKFEDVAGKGRKRIRFDQVPLH 475

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +A E++ V  Q    + P L  E  L  +YE +++P+I V+++ME  G+ +D+D+L
Sbjct: 476 LAAPYACEDAEVTWQAAASMAPNLDREPGLKRLYETIERPLIPVLAEMEYAGVLVDRDVL 535

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             +SA+ SK    L E I++L+GE FN++S +QLG ILF K+    G +TK+G + T   
Sbjct: 536 STMSADFSKRRARLVEEIHELAGEVFNVNSTQQLGHILFEKMGIKGGKRTKSG-FSTDVS 594

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L ++      I + +L +R L+K++STY D+L   I+  T RVHT Y+ A T+TGRL+S
Sbjct: 595 VLSKLADDGEKIPQQVLAYRSLTKLQSTYTDALVALIHPYTGRVHTSYNQAVTLTGRLSS 654

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G+ IR AFI+P    L++ADYSQIELR+LAH+  ++ L + F   L
Sbjct: 655 SDPNLQNIPIRTEEGRAIRTAFIAPAGWSLLAADYSQIELRVLAHMGNVSRLKEAFHAGL 714

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   AAE+FGV + +V+ + RR AKTINF ++YG+SPF LA +L I  +EA  Y+  Y
Sbjct: 715 DIHAATAAELFGVPLAQVTGEHRRMAKTINFGLVYGMSPFGLAKRLGIQNNEARAYMDLY 774

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+ G+ ++++ T    R +G+VET+ GRR    +IN+ + S+R   ER AINAP+QGS
Sbjct: 775 FARYDGVRQHMDATIRDARAHGFVETLGGRRCPIRDINATQRSLREFAERTAINAPLQGS 834

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           A+D+ + AMI +H +L+      +M+LQ+HDELV EVP++E+    +++   ME      
Sbjct: 835 ASDLIKLAMIRLHGALQAGGFKARMVLQVHDELVLEVPDKELAAVKEVVRSCMEGVM--- 891

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L +PL V++ V  NW E +
Sbjct: 892 -TLSIPLVVDMGVGQNWGEAH 911


>gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
 gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
          Length = 942

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/989 (33%), Positives = 541/989 (54%), Gaps = 60/989 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++  LFL+D  + I+R +YA     R    G+  +AI GF N L+ +++  + +    
Sbjct: 1   MSEKKRLFLLDAYALIFRGYYALIKNPRINSKGMDTSAIMGFMNSLFDVIRREQPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R E++P+YKANR + P+ +   +P ++   +A  IP IE  G EADD
Sbjct: 57  HLAVCFDKDGSAERTELFPEYKANRDETPDAIRVAVPWIQDILKAMHIPCIERSGLEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T    AE +G+ V +++ DKD  QLV+  T +Y   +     E   I  V K++G+ 
Sbjct: 117 IIGTLARQAEAQGYQVYMVTPDKDFGQLVTENTFMYRPARMGNGIEIWGIPEVQKRFGVE 176

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++    + GD+ DNIPG PG+G KTA   + ++G+LE +L N  ++K  K +E I+
Sbjct: 177 RPEQVIDYLGMMGDASDNIPGFPGVGDKTAKKFIDQFGSLEGLLENTEQLKG-KMKERII 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E AE  +LS+KL  +  D  +T   +   L   +  ++    + LEF +L ++    +  
Sbjct: 236 ENAELGKLSKKLATICVDCDVTFDEKDFELSMPDSQKVQELFEELEFRRLRDQFLKLFSG 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +  +   V              ET   ++    + QFS           E   +   +E 
Sbjct: 296 ETESGPAV-----------GTTETAKKQNREAGSGQFSLF---------EADAKGEQVEA 335

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                     +  Y  + +  + + +++ L       F   T ++D   ++ + IA S  
Sbjct: 336 YSGRKTIKDVSHLYQAVGDGMERKLFLKSLMAQNRVCFDTETTSLDPLEAELVGIAFSWE 395

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K             L V   +++ G      E+L  L+ FFE++   K+G N+KYD  
Sbjct: 396 AHKGFY----------LPVPEGREAAG------EVLEELRPFFESDTIEKVGQNLKYDIK 439

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRKSSIP 529
           VL  YGI +RG   D ML  Y+++     H++  +A+ +L+YT       I K  K+ + 
Sbjct: 440 VLSTYGIPVRGPLFDTMLAHYLINPDM-RHNMDVLAETYLNYTPVPISDLIGKKGKNQLS 498

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +      E+A+E++++ LQL  L  P+L   +   +++ ++ P++ V++ ME+ GI 
Sbjct: 499 MRDVPLEDQTEYAVEDADITLQLAQLFGPELREAQTEELFKEIEIPLLRVLADMELEGIN 558

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D   L+++S E+ K++  L   IY+ +GE+FN+ SPKQLG+ILF K+K      KT+TG
Sbjct: 559 LDTGFLEKLSGELEKDIEGLVGKIYEAAGEEFNIGSPKQLGEILFDKMKLVDKPKKTRTG 618

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+  TA+D+      ++ I++ +L++R L+K+KSTY D+LP  +   T RVHT Y     
Sbjct: 619 QYS-TAEDVLSGLAKEHEIVQMVLDYRGLTKLKSTYVDALPQQVAPSTGRVHTDYMQTVA 677

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ G++IR+AFI   P  +L++ADYSQIELRI+A +++   +
Sbjct: 678 ATGRLSSNNPNLQNIPIRTERGRQIRKAFIPRSPEYQLLAADYSQIELRIIAALSEEDTM 737

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F+   DIH   AA++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  + R+E
Sbjct: 738 IESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTNLSRTE 797

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  Y+  +P +  YI    +F R++GYV+T+ GRR +  +IN   + +R   ER A
Sbjct: 798 AKELIDTYYKTYPKLRNYISDQIDFAREHGYVQTVLGRRRYLKDINGSNAVVRGAAERNA 857

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI +++ L +    T+MLLQ+HDELVF+    E  T S +I   
Sbjct: 858 VNAPIQGSAADIIKIAMIRIYQKLREGNFKTRMLLQVHDELVFDCYRGEADTVSALIKSE 917

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A      L VPL V++     W E +
Sbjct: 918 MESA----YELAVPLVVDMGFGETWLEAH 942


>gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
          Length = 948

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/980 (33%), Positives = 519/980 (52%), Gaps = 83/980 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+ + + E    + A 
Sbjct: 45  KKTLLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDYKAE----YAAC 99

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YK++RP +PE L  Q+  +  A +A G P + I+G EADD+I T
Sbjct: 100 IFDARGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGT 159

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G    + + DKDL QLV+    L +T+  E +D   V+ K+G+ P+++V   
Sbjct: 160 LACRAAERGVHTVVSTGDKDLAQLVNSHVTLVNTMSGEVLDEAGVLNKFGVAPDRIVDYL 219

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTAA  + E+G+++ ++  A  IK      N+ E      L+
Sbjct: 220 MLVGDTVDNVPGVTKVGPKTAAKWISEFGSIDKLVEGAEGIKG-VAGNNLREAIPNFPLT 278

Query: 244 RKLVMLRTDVPITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+L+ ++ D  +T     ++ L   D +   L    +   F   +  +            
Sbjct: 279 RQLLTVKCDCDLTGHVDSVDDLTPRDRDDATLTELYERYGFRTWLRDL------------ 326

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                                    ++E+ P        +  + 
Sbjct: 327 ---------------------------------------TGDAERVPTGDARVAAEVPAA 347

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I +      W+++++     +    T ++D   +K + ++++        
Sbjct: 348 PT--ELDYRIIADWPAFDAWMEQVDKAALVAVDTETTSLDEMQAKLVGLSMAVAPGV--- 402

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I ++      +T       E+L+ L+ + E+    K+ H+ KYD  V    G
Sbjct: 403 -----ACYIPVAHRGPDGAT--QLPKDEVLARLRPWLEDASRAKLLHHAKYDTHVFANEG 455

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           I + G   D ML +YVL+S R    +  +AQ++L     + +++       I  D+++  
Sbjct: 456 IRLAGIAEDTMLQAYVLESHRGV-GLNDLAQRYLGRSGVSYEDLCGKGAKQIGFDEVAVD 514

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E+++  LQL  +LRP++  +  L     L+  +  V++ +E  G+++D   L 
Sbjct: 515 KAGHYAAEDADFTLQLHQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELG 574

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + S ++ + +L LE+  Y+L+G+ FNL+SPKQLG+ILF +++ P   KT  G   T  + 
Sbjct: 575 RQSHKLGQEMLQLEQKAYELAGQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEV 634

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L ++   D P+ + +LE+R LSK+KSTY D LP  IN  T RVHT YS A+ +TGRLAS 
Sbjct: 635 LSKL-AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPDTGRVHTHYSQAAVITGRLASS 693

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+ G+++R AFI+     L+SADYSQIELRI+AH++    L + F    D
Sbjct: 694 DPNLQNIPVRTEAGRRVREAFIAEQG-LLLSADYSQIELRIMAHVSDDANLQRAFAAGED 752

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  A+E+FGV +  VS + RR AK INF +IYG+  F LA+ L I R  A  YI RYF
Sbjct: 753 IHRATASEVFGVALADVSSEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYF 812

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  Y+E T+   R+ GYVET+FGRR+   EI       R   ERAAINAP+QG+A
Sbjct: 813 ARYPGVAMYMENTRRVAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQGTA 872

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM++V   LE  KL T+M++Q+HDELV E P+ E+    Q +   M        
Sbjct: 873 ADLIKMAMVAVQDWLEAEKLQTRMIMQVHDELVLEAPDAELELVKQTLPRLMCNVA---- 928

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL   + V  NW++ +
Sbjct: 929 ELRVPLVAEVGVGKNWEQAH 948


>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
 gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
          Length = 923

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/985 (33%), Positives = 534/985 (54%), Gaps = 76/985 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYRA+YA     R    GL  +AI GF N L ++L         SH  V
Sbjct: 2   DRLFLLDAYALIYRAYYAFIKSPRINSKGLNTSAILGFVNTLEEVLNKEH----PSHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E YP+YKA R + PE +   +P+++   +A+ IP +E+ GFEADD+I T
Sbjct: 58  AFDPAGPTFRHEAYPEYKAQREETPEAIRTAVPIIKDIIRAYRIPILEVAGFEADDVIGT 117

Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PE 177
               A   G     +++ DKD  QLV+    +Y         E + ++ V +K+ I  P 
Sbjct: 118 LATQAAAHGNLETYMMTPDKDYGQLVNERVKMYRPKFGDKDFEIMGVKEVTEKFDISSPT 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GDS DNIPG PG+G KTA+ L+ ++G++EN+L +   +K    +  +  + 
Sbjct: 178 QVIDILGLMGDSSDNIPGCPGVGGKTASKLVNQFGSIENLLEHTDELKGS-IKTKVETHR 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +    S+ L  ++TDVPIT+ LE L  ++ +   L    + LEF  L+ R    +     
Sbjct: 237 DMIAFSKFLATIKTDVPITLDLEALTTKEPDAEALQRLFEDLEFRTLLER---KFSKKQP 293

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + EP                         + S F+  +D++ + +           +   
Sbjct: 294 SAEP----------------------GFFQGSLFAEFADESPEAS-----------KYSN 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LS+Y   +  Y  I   +D  + +    T    S    T   D   +K + ++ S  +  
Sbjct: 321 LSKYKKEDFDYQLIETKEDRSRIIDLFVTKDFLSLDTETTGTDPISAKLVGLSFSVKEN- 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +  ++ +     +         ++I++  K  +E+E  LKIG NIKYD +VL 
Sbjct: 380 -------QAFYVPIPQDPEE--------AQKIVNEFKSVYEDERILKIGQNIKYDLMVLQ 424

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDK 532
            YGI+++G   D M+  Y+L      H +  +A+ +L+Y     +E++    K+   +  
Sbjct: 425 NYGITLKGEIFDTMIAHYLLQP-ELRHGMDYLAEVYLNYQTIHIEELIGPKGKNQKNMAD 483

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  SQV E+A E++++ L+L  +  PKL  E    ++  ++ P++ V++ ME  G+ ID 
Sbjct: 484 LPPSQVYEYACEDADITLKLKNVFEPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCIDT 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651
           + LK+ S   +K +  LEE I+ L+GE FN++SPKQ+G++LF KLK      KTKTGQ+ 
Sbjct: 544 EALKETSTLYTKEMNCLEEEIHALAGEPFNIASPKQVGEVLFEKLKISEKPKKTKTGQYV 603

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + LE +    +PI++ ILE R L K+  TY D+LP  IN  T  +HT ++   T TG
Sbjct: 604 TSEEVLETLRTR-HPIVEKILEHRGLKKLLGTYIDALPKLINPETGHIHTSFNQTITTTG 662

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S  PNLQNIP++ + G++IR+AFI  P  +  SADYSQIELRI+AH++    + + F
Sbjct: 663 RLSSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIEAF 722

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AA+++   +E+V+ + R  AKT NF IIYGI+ F LA ++ + R+EA + 
Sbjct: 723 REGHDIHAATAAKVYKKPLEEVTREERSKAKTANFGIIYGITVFGLAERMNVSRAEAKEL 782

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  +P + EY++K+    R+ GY ETI+ R+ +  +INS  + +R   ER AINAP
Sbjct: 783 IDGYFTTYPKVKEYMQKSIETAREKGYTETIYHRKCYLRDINSHNAVVRGYAERNAINAP 842

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI++++  +   + +KM+LQ+HDEL F V  EE     QI++  ME+A
Sbjct: 843 IQGSAADIIKIAMIAIYRRFQKEHIRSKMILQVHDELNFSVYPEEKERVQQIVIEEMERA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 ++VPL+ +     NW E +
Sbjct: 903 ----YTMQVPLEADYGWGKNWLEAH 923


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 941

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/988 (34%), Positives = 539/988 (54%), Gaps = 59/988 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  ++ LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MNSDDKLFLLDAYALIYRAYYAFIKSPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + IE V  K+ I  
Sbjct: 117 VIGTLATEAGQQGITTYMMTPDKDYGQLVSENVFMYRPKHTGGFEVMGIEQVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            ++++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 TQQVIDMLGLMGDASDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDKLKGA-LKTKVEN 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-VATTYDC 294
             E    S+ L  ++ DVPI + ++ L+ E+ N   L    + LEF  LI+R +  +   
Sbjct: 236 NREMIIFSKFLATIKIDVPIKLDMKALVREEPNEEELRKIFEELEFRTLIDRVLKKSSSP 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
             ++I P +                   +  ++ + F   +      N  +  +   L R
Sbjct: 296 SPSSIAPDLFSPGP---------LFTQNNGPVQGNLFEEFAS-----NGPEDSKNSNLAR 341

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L+ +      N  Y  I   +   + ++KL T    S    T + +   ++ + ++ S  
Sbjct: 342 LETI------NADYQLIDTEEKRSKIIKKLLTTKILSIDTETTSAEPMEAELVGMSFSDT 395

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +         +  ++ +     +          +I++  +  +ENE  +K+G NIKYD L
Sbjct: 396 EN--------QAYYVPVPAEREE--------ALKIVNEFRPLYENETSMKVGQNIKYDIL 439

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS-RKSSIP 529
           VL  YG+ ++G   D M+  YVL      H++  +A+ +L Y      E++    K+   
Sbjct: 440 VLQNYGMEVKGELFDTMIAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGPRGKNQKN 498

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +   +V ++A E+++V L+L  +L  +L  + + H++  ++ P++ V++ +E  G++
Sbjct: 499 MRDLPPEEVYKYACEDADVTLKLKNVLEEELKKQGVEHLFYEIEMPLVRVLANLESNGVR 558

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           ID + LKQ S   +  L  +E+ IY+L+ E FN++SPKQ+G+ILF KLK      KTKTG
Sbjct: 559 IDTEALKQTSEHFTVRLQEIEKEIYELAEETFNIASPKQVGEILFDKLKITDKAKKTKTG 618

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + LE +    + II  ILE+R L K+  TY D+LP  IN RT R+HT ++ A T
Sbjct: 619 QYVTSEEVLESLR-NKHEIIGKILEYRGLKKLLGTYIDALPLLINPRTGRIHTSFNQAVT 677

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH+++   + 
Sbjct: 678 ATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMI 737

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F +  DIH   AA+I+ V+I+ V+  MRR AKT NF IIYGIS F LA ++ + R EA
Sbjct: 738 DAFLSGYDIHAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYGISIFGLAERMNVDRKEA 797

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF  +P + EY++K+    R+ GYVETIF R+    +INS  +++R   ER AI
Sbjct: 798 KELIDGYFETYPQVREYMDKSIQIAREQGYVETIFHRKRFLPDINSRNATVRGYAERNAI 857

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AM  ++K  + + L  KM+LQ+HDEL F VPE E     QI++  M
Sbjct: 858 NAPIQGSAADIIKVAMARIYKRFQSNNLKAKMILQVHDELNFSVPEAEKEFVQQIVIEEM 917

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E+A      + VPL+ +     NW E +
Sbjct: 918 ERA----YRMHVPLRADCGWGKNWLEAH 941


>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
 gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
          Length = 917

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/983 (35%), Positives = 525/983 (53%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 123 TLAREAERHGMNVVVSTGDKDLAQLVTDHVTLVNTMTNETLDRDGVIAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LALIGDTVDNVPGVEKCGPKTAVKWLAQYDSLDGVIEHAGDIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            R LV + T   +T  LE     L  +      +        F   +  V          
Sbjct: 242 GRTLVTVETACDLTPHLESIEASLKSDGEARDLMRDIFARYGFKTWLREVD--------- 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                            S+ ++       E  P  +    +   
Sbjct: 293 ---------------------------------SAPAEGGGADAPEGEPAPVVAADI--- 316

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I   +    W  K++     +F   T ++D   ++ + ++ S    K 
Sbjct: 317 ------VREYDTIQTWEQFDAWFAKIDAAALTAFDTETTSLDPMLARLVGLSFSVESGK- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+          +     E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 370 AAYLPVAHRGPDMP---------EQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           Y I++ G   D +L SYV++S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YDIALNGIEHDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  LLHVY  ++ P+  V+ +ME TG+ ID  
Sbjct: 480 LTQAAEYAAEDADITLQLHHALYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDV 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+  S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 RLQAQSTEIATRLIELEAQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T++  ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFARYPGVAQYMEDTRSVAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   KLA++M++Q+HDELV EVP+ E++   + +   M     
Sbjct: 839 GTAADLIKLSMIAVDDWLTRDKLASRMIMQVHDELVLEVPDGELSLVREKLPEMMCGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGANWEEAH 917


>gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158]
          Length = 891

 Score =  925 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/951 (36%), Positives = 520/951 (54%), Gaps = 72/951 (7%)

Query: 38  IAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
           + G  NML  LL   +     SH AV+FD    TFR+E++ +YK++RP +P+ L  Q+  
Sbjct: 1   MYGVLNMLRSLLLQYK----PSHVAVVFDAKGKTFRDELFEEYKSHRPPMPDDLRAQIEP 56

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           +    +A G+P + I G EADD+I T    AEK G AV I + DKD+ QLV+P   L +T
Sbjct: 57  LHKMVKAMGLPLLAIPGVEADDVIGTLALEAEKAGRAVLISTGDKDMAQLVTPDITLINT 116

Query: 158 VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
           +    +  + V++K+GIPP  M+   AL GDS DNIPG+ G+G KTA  LLQ  G +++I
Sbjct: 117 MNNAILGPDEVVEKYGIPPSLMIDFLALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKDI 176

Query: 218 LINASRI------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
             N  ++        K     + +  E A LS +L  ++TDV + +  + L +E      
Sbjct: 177 YANLDKVATLTFRGAKTMAAKLEQNKEMALLSYQLATIKTDVELELNSDQLTVEQPAVEE 236

Query: 272 LISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQF 331
           L++  K  EF + I  +            P    +   +++    E              
Sbjct: 237 LLALFKHYEFKRWITDLEDGKWLQGNKGNPSTKKVAAVQDEPAVAE-------------- 282

Query: 332 SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391
                                      +   +++D Y  I++ +    W++KL+     +
Sbjct: 283 ---------------------------AASVLSSDGYVTILDEETFTSWLKKLQHSELFA 315

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F + TD++D   +  I I+ +T    +     V   ++D           +     ++L+
Sbjct: 316 FDLETDSLDTLSANIIGISFATAPG-EAAYLPVAHDYLDAP---------EQLDRSDVLA 365

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ 510
            LK   E+    K+G N+K+D+ VL RY I + G   D ML SY L+S    HD+ ++A 
Sbjct: 366 RLKPLLEDPQSQKVGQNLKFDRGVLKRYDIELLGIRFDTMLESYALNSVAGRHDMDTLAS 425

Query: 511 KWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-L 566
           +WL +     +EI    K+ +  ++I+  Q   +A E+++V LQL L + P+L  E+   
Sbjct: 426 RWLQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKEQGPK 485

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
           +V+E+++ P++ V+S++E  G+ IDQ +L   S E+   L  LE   ++L+GE FNLSSP
Sbjct: 486 NVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELELKAHELAGEPFNLSSP 545

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQL  ILF K       KT  G   T+ + L ++   D P+ K ILE R L+K+KSTY D
Sbjct: 546 KQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTD 604

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            LP  IN  + RVHT Y    T TGRL+S +PNLQNIP++ D G++IR+AFI+P   +++
Sbjct: 605 KLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIL 664

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYSQIELRI+AH+++   L   F +  DIHR  AAE+FGV ++KVS + RR AK INF
Sbjct: 665 AADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINF 724

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            +IYG+S F L+ QL I   EA  Y+  YF R+PG+ +Y+E T+    Q GYV T+ GRR
Sbjct: 725 GLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRR 784

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIH 925
           ++  +IN+  +  R   ERAAINAP+QG+AADI +RAMI+V   LE       KM++Q+H
Sbjct: 785 LYLPDINASNAMRRKAAERAAINAPMQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQVH 844

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           DELVFEV  + +  A   I   ME      + L VPL+V+I V +NW + +
Sbjct: 845 DELVFEVQADAVEAACAQIRALME----GSMKLDVPLRVDIGVGDNWDQAH 891


>gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 884

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/944 (35%), Positives = 518/944 (54%), Gaps = 71/944 (7%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML  L+   +     +H AV+FD    TFR+E++  YK++RP +P+ L  Q+  +    +
Sbjct: 1   MLRSLIMQYQ----PTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVK 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI 163
           A G+P + + G EADD+I T    AEK G  V I + DKD+ QLV+P   L +T+    +
Sbjct: 57  AMGLPLLAVSGVEADDVIGTLAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTIL 116

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
             + V+ K+G+PPE ++   AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +
Sbjct: 117 GPDEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEK 176

Query: 224 IKQ------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           I        K     + +  + A LS KL  ++TDV + +  E L ++      L+   K
Sbjct: 177 IAGLTFRGAKTMAGKLAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFK 236

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
             EF +    V       A   +P                                    
Sbjct: 237 KYEFKRWTADVEAGKWLQAKGAKP------------------------------------ 260

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
                + +  + + ++         ++ ++Y  I++   ++ W++KL+     +F   TD
Sbjct: 261 -----AAKPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETD 315

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           ++D   +  + ++ +           V   ++D                +  L  LK   
Sbjct: 316 SLDNIAANLVGLSFAIEPGV-AAYVPVAHDYLDAP---------DQISRQRALELLKPLL 365

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           E+E   K+G N+KYD+ VL  YGI +RG   D ML SY+L+S    HD+ S++ +WL + 
Sbjct: 366 EDEKVRKVGQNLKYDRGVLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHK 425

Query: 517 ---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERL 572
               ++I    K+ +  ++I+  +   +A E+++V LQL L + P+L   K  L+V+E +
Sbjct: 426 TITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENI 485

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P++ V+S++E  G++ID  +L + S EI+  L  LE+  +D++GE FNLSS KQL  I
Sbjct: 486 EMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTI 545

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF K       KT  G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  I
Sbjct: 546 LFEKQGIKPLKKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMI 604

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N +T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQ
Sbjct: 605 NPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQ 664

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH+++   L   F    DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+
Sbjct: 665 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGM 724

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL IPR EA  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I
Sbjct: 725 SAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDI 784

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S  ++ R   ERAAINAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV
Sbjct: 785 KSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEV 844

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ++++   ++ I   ME        + VPL V +    NW + +
Sbjct: 845 HKDDLDAVAKRIHQLMENCT----RIDVPLLVEVGSGENWDQAH 884


>gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275]
          Length = 931

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/986 (34%), Positives = 519/986 (52%), Gaps = 65/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQISFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP+ I+ R  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPDMISPRDNRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +PP   ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V + L    L +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQIMAK 907

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 908 VGGGL--LDVPLVAEVGVGENWEEAH 931


>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
 gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
          Length = 927

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/977 (35%), Positives = 532/977 (54%), Gaps = 58/977 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +G AVTI + DKD  QLV P   L +T+   ++D  E VI K+G+ P ++V L A
Sbjct: 117 LQGASDGLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  EN+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGENLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++TDV +      L L + N   L        FT+ +  +            P+ +
Sbjct: 236 ELVTIKTDVVLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAEAGGLTAPMAV 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                       E    R T   ++  ++  +    +++                     
Sbjct: 296 ---------ARTEPGRARGTGFVSAPAAAPVELGPALSA--------------------- 325

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I+    +  W+ +L   G  +F   TD++DA  +  I ++++            
Sbjct: 326 PGQYETILTQAQLDSWIARLRAAGQFAFDTETDSLDALQANLIGLSVAAEPG-------- 377

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++                  + L+ L     +    K+G + KYD  V+ R+GI++ 
Sbjct: 378 QAAYLPFGHDFP--GAPAQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGIALA 435

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL+SG + HD+ S+A+++L Y     ++I       I   ++S      
Sbjct: 436 GYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDICGKGAKQIKFAQVSLEDATR 495

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L  +L  E  L  VY  ++ P++ V+ ++E  G+ +D   L++ S
Sbjct: 496 YAAEDADITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 556 ADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEALE 614

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + IL++R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +PN
Sbjct: 615 AIADQHELPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN 674

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+HR
Sbjct: 675 LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHR 734

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+
Sbjct: 735 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 794

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI
Sbjct: 795 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 854

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+SV   + DH     M+LQ+HDELVFE   + + T    +   M  A     +LR
Sbjct: 855 IKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVTARMSAAA----SLR 910

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V +NW E +
Sbjct: 911 VPLVVDSGVGDNWDEAH 927


>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
 gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
          Length = 917

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/983 (35%), Positives = 519/983 (52%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + + G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLVS    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 123 TLAREAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LALIGDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            R LV + T   +   LE     L  +      L        F   +  V          
Sbjct: 242 GRTLVTVETACDLAPHLESIEASLKTDGEARDLLRDIFARYGFKTWLREVE--------- 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                            S+ ++       E  P  +    +   
Sbjct: 293 ---------------------------------SAPAEGGGADAPEGEPAPVIAADI--- 316

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I        W  K++     +F   T  +D   ++ + ++ S    K 
Sbjct: 317 ------VREYDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMTARLVGLSFSIEPGK- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     DL          +     ++L+ L+ + E+    K+G ++KYD  VL  
Sbjct: 370 AAYLPVAHRGPDLP---------EQLPIDDVLARLRPWLESADRKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 480 LEQAAAYAAEDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDA 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL+  S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 LLQAQSTEIATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQ 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFTRYPGVAQYMEDTRTTAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   +LA++M++Q+HDELV EVP++E++   + +   M     
Sbjct: 839 GTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGANWEEAH 917


>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
          Length = 927

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/977 (35%), Positives = 532/977 (54%), Gaps = 58/977 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+        ++ A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+++Y DYKANRP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +G AVTI + DKD  QLV P   L +T+   ++D  E VI K+G+ P ++V L A
Sbjct: 117 LQGASDGLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EY +L+ ++ NA +IK  K  EN+        L+R
Sbjct: 177 LMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKG-KIGENLRAALPRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV ++TDV +      L L + N   L        FT+ +  +            P+ +
Sbjct: 236 ELVTIKTDVVLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAEAGGLTAPMAV 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                       E    R T   ++  ++  +    +++                     
Sbjct: 296 ---------ARTEPGRARGTGFVSAPAAAPVELDPALSA--------------------- 325

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I+    +  W+ +L   G  +F   TD++DA  +  I ++++            
Sbjct: 326 PGQYETILTQAQLDSWIARLRAAGQFAFDTETDSLDALQANLIGLSVAAEPG-------- 377

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++                  + L+ L     +    K+G + KYD  V+ R+GI++ 
Sbjct: 378 QAAYLPFGHDFP--GAPAQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGIALA 435

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL+SG + HD+ S+A+++L Y     ++I       I   ++S      
Sbjct: 436 GYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDICGKGAKQIKFAQVSLEDATR 495

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L  +L  E  L  VY  ++ P++ V+ ++E  G+ +D   L++ S
Sbjct: 496 YAAEDADITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++SK +L+ ++   +L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 556 ADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPS-TNEEALE 614

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + IL++R L+K++STY D LP  I+ ++ RVHT Y  A   TGRL+S +PN
Sbjct: 615 AIADQHELPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPN 674

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+  D+HR
Sbjct: 675 LQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHR 734

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  I+ VS   RR AK INF ++YG+S F LA QL I R EA DYI  YF R+
Sbjct: 735 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 794

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +++E T+   R  GYVET+FGRR++ D IN+     R   ERAAINAP+QG+AADI
Sbjct: 795 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 854

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+SV   + DH     M+LQ+HDELVFE   + + T    +   M  A     +LR
Sbjct: 855 IKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVTARMSAAA----SLR 910

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V +NW E +
Sbjct: 911 VPLVVDSGVGDNWDEAH 927


>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
 gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
          Length = 920

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/983 (35%), Positives = 521/983 (53%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 11  EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 66  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 126 TLAREAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDY 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +Y  L+ ++ +A+ IK     +N+    +   L
Sbjct: 186 LALIGDTVDNVPGVEKCGPKTAVKWLTQYDTLDGVIEHAADIKG-VVGDNLRRALDFLPL 244

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            R+LV + T   +T  LE     L  +      L        F   +  V          
Sbjct: 245 GRQLVTVDTSCDLTPHLESIEASLKSDGEARDLLRDIFARYGFKTWLREVD--------- 295

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                            S+ ++       E  P  +    +   
Sbjct: 296 ---------------------------------SAPAEGGGADAPEGEPAPVIAADV--- 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I   +    W  K++     +F   T  +D   ++ + ++ S    K 
Sbjct: 320 ------VREYETIQTWEQFDAWFAKIDAAALTAFDTETTALDPMLARLVGLSFSVEPGK- 372

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+          +     E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 373 AAYLPVAHRGPDMP---------EQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVLAN 423

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           Y I++ G   D +L SYV++S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 424 YDIALNGIEHDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 483 LAQAAEYAAEDADITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDA 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 543 RLHAQSTEIATRLIELEGEAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 603 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 662 ASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 722 GEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 782 RYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   +LA++M++Q+HDELV EVPE E++   + +   M     
Sbjct: 842 GTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVA- 900

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 901 ---KLKVPLVAEVGAGANWEEAH 920


>gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013]
          Length = 983

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/993 (34%), Positives = 517/993 (52%), Gaps = 72/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 46  MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 161

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 162 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 221

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 222 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKG-KVGENLRAALPRL 280

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 281 PLSYDLVTIKTDVDLHAELSDGIESLRCTTPKWAQLVVDFKRWGFRTWLK---------- 330

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E           F S +         +T  +   E+  
Sbjct: 331 --------------------EAESRMHEAADGDLFGSDTIGEQAALDMETSSERLPEKA- 369

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL           T ++DA ++  + I+I+    
Sbjct: 370 ----VAPEKLDYQAVTTEAQFATLLDKLSQAEKIGIDTETTSLDAMNAALVGISIAFQAG 425

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L +LK + EN    KIG N+KYD+ V 
Sbjct: 426 E--------AVYIPVGHSLT--AAPEQLDLQDVLGHLKPYLENPALKKIGQNLKYDQHVF 475

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 476 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 534

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 535 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 593

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 594 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 653

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 654 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 712

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T+ G+K+RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 713 GRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 772

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 773 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 832

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 833 FIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 892

Query: 891 PIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQI 943
           P+QG+A+D+ +RAMI V + L + +       L +K+++Q+HDELV EV E E+    + 
Sbjct: 893 PMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVKEK 952

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M K       L VPL   + V  NW+E +
Sbjct: 953 LPQIMAKVDGGL--LDVPLVAEVGVGENWEEAH 983


>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
 gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
          Length = 952

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/986 (34%), Positives = 523/986 (53%), Gaps = 67/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRA++A   LS   DG P  A+ G  NML +L    R + +  +
Sbjct: 24  MSK-PTLLLVDGSSYLYRAYHAMAQLS-APDGAPTGALYGVLNMLRRL----RADYVHDY 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 78  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDV 137

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++ 
Sbjct: 138 IGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIR 197

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A  +K  K  EN+       
Sbjct: 198 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVKG-KVGENLQAALPQL 256

Query: 241 RLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +    +  LE L        +L+   K   F   +           
Sbjct: 257 PLSYDLVTIKTDVDLHAELSDGLESLRRTSPKWAQLVVDFKRWGFRTWLK---------- 306

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E        T  F S         + +T  +   E   
Sbjct: 307 --------------------EAESRMHEAQNTDLFGSEHIGEQAALAMETQPEKQPELAP 346

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 347 AP-----EKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNAALVGISIAFQAG 401

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 402 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 451

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 452 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 510

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 511 VAIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 569

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y ++G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 570 AELARQSAELGAELMKLEQEAYAVAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 629

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 630 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 688

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 689 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 748

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A  
Sbjct: 749 FQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKT 808

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 809 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 868

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V + L    L +K+++Q+HDELV EVPE E+    + +   M K
Sbjct: 869 PMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQIMAK 928

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 929 VDEGM--LNVPLVAEVGVGMNWEEAH 952


>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
 gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
          Length = 935

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/991 (34%), Positives = 523/991 (52%), Gaps = 71/991 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNKPTLLLVDGSSYLYRAYHAMAQLT-APDGAPTGALYGVLNMLRRL----RADYVHDY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 56  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  EK+DIE V +K+G+ P+++ 
Sbjct: 116 IGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGEKLDIEGVKEKFGVRPDQIR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ +K  K  EN+       
Sbjct: 176 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEVKG-KVGENLQAALPQL 234

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L    K   F   +           
Sbjct: 235 PLSYDLVTIKTDVDLHTELSDGLESLRRTSPKWSQLAVDFKRWGFRTWLK---------- 284

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E           F S +         +T  +   E+  
Sbjct: 285 --------------------EAESRMHEAADGDLFGSDTIGEQAALDMETSSERLPEKA- 323

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL           T ++DA ++  + I+I+    
Sbjct: 324 ----VAPEKLDYQAVTTEAQFAALLDKLSQADKIGIDTETTSLDAMNAALVGISIAFQAG 379

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 380 E--------AVYIPVGHSLT--AAPEQIDLQDVLGRLKPHLENSALKKIGQNLKYDQHVF 429

Query: 477 HRYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSS 527
             YGI++ G        D ML SY+++S    H +  ++++WL     T + +       
Sbjct: 430 ANYGIALNGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQ 488

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           I    ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G
Sbjct: 489 IGFADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNG 547

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKT 645
           +QID+  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT
Sbjct: 548 VQIDRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKT 607

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
             G   T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ 
Sbjct: 608 AKGGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQ 666

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++   
Sbjct: 667 AVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDK 726

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I  
Sbjct: 727 TLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDN 786

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A ++I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I++  ++ R   ER
Sbjct: 787 ISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAER 846

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAINAP+QG+A+D+ +RAMI V   L+   L TK+++Q+HDELV EVPE E+    + + 
Sbjct: 847 AAINAPMQGTASDLIKRAMIDVSCWLDSDGLKTKLIMQVHDELVLEVPEAELDLVKEKLP 906

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M K       L VPL   + V  NW+E +
Sbjct: 907 QIMAKVDEGM--LNVPLVAEVGVGMNWEEAH 935


>gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
 gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
          Length = 887

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/945 (36%), Positives = 513/945 (54%), Gaps = 70/945 (7%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML  +++    E      AVIFD    TFR+++Y  YKA+RP +P+ L  Q+  +    +
Sbjct: 1   MLRAMMRQFASER----MAVIFDAKGKTFRDDMYDQYKAHRPPMPDDLRCQIEPLHQIIR 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI 163
           A G+P I I+G EADD+I T    A + G  V I + DKD+ QLV+    L +T+    +
Sbjct: 57  AMGLPLISIEGVEADDVIGTLAAQASQAGMPVLISTGDKDMAQLVNDHVTLINTMTNVVM 116

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +
Sbjct: 117 DREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGDKTATALLQGIGGLEALYANLDK 176

Query: 224 IKQ------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           I +      K   + + E  + A LS +L  ++ DV +    + L+    +   LI+   
Sbjct: 177 IAELGFRGSKTMAKKLEENRDNAWLSYQLATIKLDVELDHTPQSLLKTTPDCDALIALYG 236

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
            + F   +  +    +      EP+                           Q    S Q
Sbjct: 237 KMAFKSWLTELLDGGNGVVEAREPIT--------------------------QREVASGQ 270

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
              + SE              S   I+   Y  I++ +    W+ KL+     +F   TD
Sbjct: 271 AHTVMSE-------------HSAVTIDRSQYQTILDEQSFAIWLAKLKQAEVFAFDTETD 317

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           ++D   +  + ++ +  +  +     V   ++D      +D          +L+ LK   
Sbjct: 318 SLDYMVANLVGLSFAVAEG-EAAYVPVGHDYLDAPQQLDRD---------WVLAQLKPLL 367

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           EN    K+G N+KYD  V+ RYGI+MRG   D ML SYV +S     D+ S+A ++L ++
Sbjct: 368 ENPQLAKVGQNLKYDASVVARYGITMRGIAHDTMLASYVYNSVGGKQDMDSLALRFLQHS 427

Query: 517 ---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERL 572
               +++    K+ +  ++I   Q   +A E+++V L+L   L+  L  +  L  VY  +
Sbjct: 428 CISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLQALLEADAPLFGVYRDI 487

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P++ V+S+ME TG+ ID  LL   S EI++ L+ LE   Y+L+ ++FNLSSPKQL  I
Sbjct: 488 EVPLVPVLSRMERTGVLIDDQLLAIQSQEIAQRLVELERKAYELADQEFNLSSPKQLQTI 547

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF ++K P   KT +G   T  + L+++   D P+   ILE+R L+K+KSTY D LP  I
Sbjct: 548 LFEQMKLPVVKKTPSGTPSTNEEVLQELAL-DYPLPAVILEYRGLAKLKSTYTDKLPKMI 606

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N  T RVHT Y  A T TGRL+S +PNLQNIPI+   G++IR+AFI+P   K+++ DYSQ
Sbjct: 607 NPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNQEGRRIRQAFIAPSGWKIMAVDYSQ 666

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH++    L   F+   DIH   AAEI GV+I++V+ + RR AK +NF +IYG+
Sbjct: 667 IELRIMAHLSGDPALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNFGLIYGM 726

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA QL IPRSEA  Y+ +YF R+PG+  Y+E+T++   + GYVET+FGRR+H  EI
Sbjct: 727 SAFGLAKQLGIPRSEAQHYMDKYFERYPGVLRYMEETRSMAAEQGYVETLFGRRLHLPEI 786

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFE 931
            S     R   ERAAINAP+QG+AADI ++AM+ V   +E       K+L+Q+HDELVFE
Sbjct: 787 QSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDNWIETEGQGRVKLLMQVHDELVFE 846

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           V E  ++     +   ME A      L VPL  +    NNW E +
Sbjct: 847 VQESALSEIESKVQELMESAA----QLNVPLVADAGHGNNWDEAH 887


>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
 gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
          Length = 917

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/983 (35%), Positives = 518/983 (52%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLVS    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 123 TLAREAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LALIGDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            R LV + T   +   LE     L  +      L        F   +  V          
Sbjct: 242 GRTLVTVETACDLAPHLESIEASLRTDGEARDLLRDIFARYGFKTWLREVE--------- 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                            S+ ++       E  P  +    +   
Sbjct: 293 ---------------------------------SAPAEGGGADAPEGDPAPVIAADI--- 316

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I        W  K++     +F   T  +D   ++ + ++ S    K 
Sbjct: 317 ------VREYDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMIARLVGLSFSIEPGK- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+          +     E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 370 AAYLPVAHRGPDMP---------EQLPIDEVLARLKPWLESADRKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI + G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YGIELNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 480 LEQAAAYAAEDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDA 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL+  S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 LLQAQSTEIATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQ 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFTRYPGVAQYMEDTRTAAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   +LA++M++Q+HDELV EVP++E++   + +   M     
Sbjct: 839 GTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGANWEEAH 917


>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
 gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
          Length = 928

 Score =  923 bits (2385), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/983 (35%), Positives = 522/983 (53%), Gaps = 66/983 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  + AV
Sbjct: 2   RKTLLLVDGSSYLYRAYHAMAQLT-APDGAPTGALYGVLNMLRRL----RADYVHDYCAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+I T
Sbjct: 57  VFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++    
Sbjct: 117 LAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+        LS
Sbjct: 177 ALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKG-KVGENLQAALPQLPLS 235

Query: 244 RKLVMLRTDVPI----TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             LV ++TDV +    +  LE L        +L    K   F   +              
Sbjct: 236 YDLVTIKTDVDLHSELSDGLESLRRTSPKWSQLAVDFKRWGFRTWLK------------- 282

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                            E E           F S +         +T  +   E+     
Sbjct: 283 -----------------EAESRIHEAADGDLFGSDTIGEQAALDMETSSERLPEKA---- 321

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  +         + KL   G       T ++DA ++  + I+I+    +  
Sbjct: 322 -VAPEKLDYQAVTTEAQFAALLDKLSQAGKIGIDTETTSLDAMNAALVGISIAFQAGE-- 378

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V   Y
Sbjct: 379 ------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY 430

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISD 535
           GI++ G   D ML SY+++S    H +  ++++WL     T + +       I    ++ 
Sbjct: 431 GIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFADVAI 489

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+  L
Sbjct: 490 EQATEYAAQDADFALRLDAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDRAEL 548

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTT 653
            + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G   T 
Sbjct: 549 ARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTN 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +TGRL
Sbjct: 609 EAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRL 667

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   F+N
Sbjct: 668 ASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 727

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A  +I 
Sbjct: 728 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 787

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINAP+Q
Sbjct: 788 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 847

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+A+D+ +RAMI V + L D  L +K+++Q+HDELV EVPE E+    + +   M K   
Sbjct: 848 GTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQIMAKVDE 907

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL   + V  NW+E +
Sbjct: 908 GM--LNVPLVAEVGVGMNWEEAH 928


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score =  923 bits (2385), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/983 (32%), Positives = 511/983 (51%), Gaps = 74/983 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYRA+YA     R    G   +AI GF N L  +L+  +     +H  + 
Sbjct: 3   KLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAIMGFVNTLEDVLKKEQ----PTHIGIA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y  YKA R + PE++   +P+++   +A+ IP +E+ G+EADD+I T 
Sbjct: 59  FDPAGPTFRHEAYQQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVSGYEADDVIGTL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI-PPEKM 179
              A ++G    +++ DKD  QLVS    +Y         E + +E V  K+ I  P ++
Sbjct: 119 ATEAGRQGIRTYMMTPDKDYGQLVSDNVFMYRPKYGDKEFEVMGVEEVKAKFDIQSPAQV 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L GD+ DNIPG PG+G KTA  L+ ++G++EN+L +   +K    +  +    E 
Sbjct: 179 IDMLGLMGDTADNIPGCPGVGEKTAQKLIAQFGSIENLLDHTGELKGA-IKTKVETNREQ 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ L  ++TDVPI + ++ L  E+ +   L    + LEF  L+ RV  T    A   
Sbjct: 238 ILFSKFLATIKTDVPIALDMDGLKREEPDKDELKRIFEELEFRSLLERVLGTDKKTATPP 297

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                    + +   F              TP+         L+
Sbjct: 298 ------------------------PSAQGDLFGFF-----------TPESTEASENSNLT 322

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +       Y  I   +   Q +Q + T    S    T   D   ++ + ++ +  +    
Sbjct: 323 KLDDLVFDYQLIDTEEKEDQLLQNILTQPILSLDTETTGTDPIRAELVGMSFAYAEN--- 379

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                +  ++ +    ++         + I+   K  FEN   LK+G NIKYD LVL  Y
Sbjct: 380 -----QAFYVPVPADRTE--------AQRIVDKFKPVFENPQTLKVGQNIKYDMLVLANY 426

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKIS 534
           G+ ++G   D M+  YVL      H +  +A+ +L Y     +E++    K+   +  + 
Sbjct: 427 GVEIQGPMFDTMIAHYVLQPELH-HGMDYLAEIYLHYETIKIEELIGPKGKNQKNMRDLD 485

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + +  +A E+++V L+L  +L  +L       ++  ++ P++ V++ ME  G++ID + 
Sbjct: 486 PANIYRYACEDADVTLKLKNVLEKELKQNDAEALFCDIEMPLVPVLAYMERNGVRIDTEA 545

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           LK+ S   +  +  +EE ++ L+G +FN++SPKQ+G++LF +LK      KTKTGQ+ T+
Sbjct: 546 LKETSRHFTARMNQIEEEVHRLAGVEFNIASPKQVGEVLFDRLKIVDKPKKTKTGQYVTS 605

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE +  G + I++ ILE R L K+  TY D+LP  IN  T  +HT ++   T TGRL
Sbjct: 606 EEVLESLK-GKHEIVEKILEHRGLKKLLGTYIDALPQLINPETGHIHTSFNQTVTATGRL 664

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S  PNLQNIP++ + G++IR+AFI     +  SADYSQIELRI+AH++    + + F  
Sbjct: 665 SSSNPNLQNIPVRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFRA 724

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIH   AA+I+   +E V+ + R  AKT NF IIYGIS F LA +L I R EA + I 
Sbjct: 725 NQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVFGLAERLGIDRKEAKELID 784

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P + EY++ +    RQ GY+ET+F RR +  +INS  + +R   ER AINAPIQ
Sbjct: 785 GYFENYPHVKEYMDSSIQAARQKGYIETVFRRRRYLPDINSRNAVVRGYAERNAINAPIQ 844

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AMI +++   +  + +KM+LQ+HDEL F V  EE     QI++  ME A  
Sbjct: 845 GSAADIIKVAMIRIYRRFREEGIRSKMILQVHDELNFSVVPEEKEKVQQIVIAEMESA-- 902

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               ++VPL  +     NW E +
Sbjct: 903 --YKMKVPLLADCGWGKNWLEAH 923


>gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 923

 Score =  922 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/985 (34%), Positives = 533/985 (54%), Gaps = 76/985 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYRA+YA     R    GL  +AI GF N L ++L         SH  V
Sbjct: 2   DRLFLLDAYALIYRAYYAFIKSPRINSKGLNTSAILGFVNTLEEVLNKEH----PSHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E YP+YKA R + PE +   +P+++   +A+ IP +E+ GFEADD+I T
Sbjct: 58  AFDPAGPTFRHEAYPEYKAQREETPEAIRTAVPIIKDIIRAYRIPILEVAGFEADDVIGT 117

Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE- 177
               A   G     +++ DKD  QLV+    +Y         E + ++ V +K+ I    
Sbjct: 118 LATQAAAHGNLETYMMTPDKDYGQLVNERVKMYRPKFGDKDFEIMGVKEVTEKFDISSPM 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GDS DNIPG PG+G KTA+ L+ ++G++EN+L +   +K    +  +  + 
Sbjct: 178 QVIDILGLMGDSSDNIPGCPGVGGKTASKLVNQFGSIENLLEHTDELKGS-LKTKVETHR 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +T   S+ L  ++TDVPIT+ LE L  ++ +   L    + LEF  L+ R    +     
Sbjct: 237 DTIAFSKFLATIKTDVPITLDLEALTTKEPDAEALQRLFEDLEFRTLLER---KFSKKQP 293

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             EP                         + S F+  +D++ + +           +   
Sbjct: 294 TAEP----------------------GFFQGSLFAEFADESPEAS-----------KYSN 320

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           LS+Y   +  Y  I   +D Q+ +    T    S    T   D   +K + ++ S  +  
Sbjct: 321 LSKYKKEDFDYQLIETKEDRQRIIDLFVTKDFLSLDTETTGTDPISAKLVGLSFSVEEN- 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +  ++ +     +         ++I++  K  +E+E  LKIG NIKYD +VL 
Sbjct: 380 -------QAFYVPIPQDFEE--------AQKIVNEFKSVYEDERILKIGQNIKYDLMVLQ 424

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDK 532
            YGI+++G   D M+  Y+L      H +  +A+ +L+Y     +E++    K+   +  
Sbjct: 425 NYGITLKGEIFDTMIAHYLLQP-ELRHGMDYLAEVYLNYQTIHIEELIGPKGKNQKNMAD 483

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  SQV E+A E++++ L+L  +  PKL  E    ++  ++ P++ V++ ME  G+ ID 
Sbjct: 484 LPPSQVYEYACEDADITLKLKNVFEPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCIDT 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651
           + LK+ S   +K +  LEE I+ L+GE FN++SPKQ+G++LF KLK      KTKTGQ+ 
Sbjct: 544 EALKETSTLYTKEMNRLEEEIHALAGEPFNIASPKQVGEVLFEKLKISEKPKKTKTGQYV 603

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + LE +    +PI++ ILE R L K+  TY D+LP  IN  T  +HT ++   T TG
Sbjct: 604 TSEEVLETLRTR-HPIVEKILEHRGLKKLLGTYIDALPKLINPETGHIHTSFNQTITTTG 662

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S  PNLQNIP++ + G++IR+AFI  P  +  SADYSQIELRI+AH++    + + F
Sbjct: 663 RLSSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIEAF 722

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AA+I+   +E+V+ + R  AKT NF IIYGI+ F LA ++ + R+EA + 
Sbjct: 723 REGHDIHAATAAKIYKKPLEEVTREERSKAKTANFGIIYGITVFGLAERMNVSRAEAKEL 782

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  +P + EY++K+    R+ GY ETI+ R+ +  +INS  + +R   ER AINAP
Sbjct: 783 IDGYFTTYPKVKEYMQKSIETAREKGYTETIYHRKCYLRDINSHNAVVRGYAERNAINAP 842

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI+++   +   + +KM+LQ+HDEL F V  EE     QI++  ME+A
Sbjct: 843 IQGSAADIIKIAMIAIYHRFQKEHIRSKMILQVHDELNFSVYPEEKERVQQIVIEEMERA 902

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 ++VPL+ +     NW E +
Sbjct: 903 ----YTMQVPLEADYGWGRNWLEAH 923


>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
 gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
          Length = 921

 Score =  922 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/986 (34%), Positives = 521/986 (52%), Gaps = 75/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRAF+A P L R   G P +A  G    +  +LQ  +KE  A +
Sbjct: 1   MSDTKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPTSAATGAIRGMINMLQALKKEVHADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+ IYPDYKANR  +PE L  Q+  +    +  G P + I+G EADD+
Sbjct: 60  AACVFDASGPTFRDAIYPDYKANRAPMPEDLRAQIEPIHEVVRLLGWPVLAIEGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +G  V I S DKDL QLV     + DT+  ++ D+  V  ++G+PP  MV
Sbjct: 120 IGTLARAAAGQGMRVVISSGDKDLSQLVDEHVTIIDTMNGKRRDVAGVTAEFGVPPALMV 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GD++DN+PG+P +G KTAA  L EYG+L+ ++ +A  IK     EN+    +  
Sbjct: 180 DFQALVGDAVDNVPGVPKVGPKTAAKWLAEYGSLDALVAHAGAIKG-VAGENLRGALDWL 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDC 294
             +R+LV ++TD  ++  +  L   D           L  F +   F  L   +      
Sbjct: 239 PTARELVTIKTDCDLSGHVAGLPAMDAIAFSAEQTGNLADFYQKYGFKSLARALK----- 293

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                                   +   +  +    P    +  
Sbjct: 294 -------------------------------------PEAAPAGASGDLFDAPDASTVAT 316

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
             +       + +Y  I+    +  W+ ++     A+    T ++D   ++ + I+ S  
Sbjct: 317 RAQH-----RDVAYDIILTWAQLDDWLARVRAAPLAAIDTETTSLDELRAEIVGISFSVE 371

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                        +I L+ H   D+  +  L  E+L+ LK + E+    K+G ++KYD+ 
Sbjct: 372 PGA--------AAYIPLA-HDGPDTPAQLPLA-EVLARLKPWLEDPKHPKLGQHVKYDRH 421

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPI 530
           V   +GI +RG+  D ML SYVL+  +  H +AS+A++       + +++       IP 
Sbjct: 422 VFANHGIEVRGYVHDTMLQSYVLEVHK-PHGLASLAERHTGRTGISYEDLCGKGAKQIPF 480

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            ++   +   ++ E+S+  L +  +L P+L  ++ L     L+    + + ++E  G+ I
Sbjct: 481 SQVPVDKAAAYSCEDSDQTLDVHRVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLI 540

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D L   S  + + +L LE+  YD++G+ FNL SPKQLG+I F KL  P   KT TG  
Sbjct: 541 DADRLAAQSHALGQRILQLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGAR 600

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++   D P+   +LE R LSK+K TY D L    + RT RVHT Y+ A  +T
Sbjct: 601 STDEEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVAVT 659

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T  G+++R AF++PP + + S DYSQIELRI+AHI+    L + 
Sbjct: 660 GRLSSNDPNLQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRA 719

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LD+HR  AAE+FGV + +V+ + RR+AK INF +IYG+S + LA  L I  + A +
Sbjct: 720 FHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKN 779

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+ +Y++ TK   +  GYVET+FGRR++  EINSP    R+  ERAAINA
Sbjct: 780 YIDRYFQRYPGVWQYMQDTKAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAERAAINA 839

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AAD+ ++AM+ V  +L+  K    M++Q+HDELVFE+PE ++      +   M  
Sbjct: 840 PMQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHDELVFELPEGDVNWLRAEVPRIMAG 899

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L+VPL   + V  +W + +
Sbjct: 900 VA----ELKVPLLAEVGVGPDWDKAH 921


>gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
 gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
          Length = 975

 Score =  922 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/986 (34%), Positives = 518/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 46  MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 161

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 162 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIR 221

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 222 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKG-KVGENLQAALPQL 280

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 281 PLSYDLVTIKTDVDLHAELSDGIESLRRTAPKWAQLVVDFKRWGFRTWLK---------- 330

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 331 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 369

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 370 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 425

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L +LK + EN    KIG N+KYD+ V 
Sbjct: 426 E--------AVYIPVGHSLT--AAPEQLDLQDVLGHLKPYLENPALKKIGQNLKYDQHVF 475

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 476 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 534

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 535 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 593

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  + + FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 594 AELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 653

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 654 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 712

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 713 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 772

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 773 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 832

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 833 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINA 892

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 893 PMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 951

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 952 VGGGL--LDVPLVAEVGVGENWEEAH 975


>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
 gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
          Length = 943

 Score =  922 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/988 (34%), Positives = 525/988 (53%), Gaps = 57/988 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  LFL+D  + I+R +YA     R    G   +AI GF N L  +++  R +    
Sbjct: 1   MAAQKRLFLLDAYALIFRGYYAFIKNPRINSKGFDTSAILGFTNSLLDVIKRERPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R E++P+YKANR + PE +   +P +    +A  IP I  +G+EADD
Sbjct: 57  HLAVCFDRGGSVDRVEVFPEYKANRQETPEPITLAIPYIESILKAMKIPVIVKEGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIP- 175
           II T +  AEKEG+   +++ DKD  QLVS    +Y        E   I  V +K+G+  
Sbjct: 117 IIGTLSKKAEKEGYQTFMVTPDKDFAQLVSENIFMYRPKFGGGYETWGITEVQEKFGVER 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE+++    + GDS+DNIPG+PG+G KTA   L  YG++E +L +   +K  K +E +  
Sbjct: 177 PEQVIDFLGMMGDSVDNIPGLPGVGEKTAKKFLAAYGSMEGLLAHTHELKG-KMKEKVEA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E   LS++L  +  DVP+    E   + D +   +      LEF +L++ +  T+   
Sbjct: 236 NGELGMLSKQLATIMLDVPVEFNEEDFEMCDPDLEAVTEIFNELEFRRLLDNLTKTFAKS 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N                    E +  TT K +Q +S + Q     +           +
Sbjct: 296 DEN------------------SAEANTKTTSKANQKASTTGQFDLFATPGGGNATEATNI 337

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                    +  Y         +  +QKL    S  F   T  + A   + + IA S   
Sbjct: 338 SGYQTIKTTDHFYQLANTPLSRKMLLQKLLKQQSVCFDTETTGLKALEVELVGIAFSWEK 397

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K                          + T  IL   + FFE+    K+G N+KYD  V
Sbjct: 398 GKGY----------------YVAFPEDQSETTAILEEFRPFFESTTIEKVGQNLKYDIKV 441

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRKSSIPI 530
           L  Y + ++G   D M+  Y+++     H++  +++ +L+Y      + I K  K+ + +
Sbjct: 442 LSNYDMPVKGQLFDTMIAHYLINPDM-RHNMDVLSETYLNYQPVSIVELIGKKGKNQLSM 500

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            ++   Q  E+A+E++++  QL      +L    L  ++  ++ P++ V+S MEI GI +
Sbjct: 501 RQVPLEQQTEYAVEDADITYQLKEHFIKELESGHLTKLFSDVEVPLVSVLSAMEIEGINL 560

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D D L ++S  ++ ++  LE++IY+ +GE+FN+ SPKQLG ILF KLK      KTKTGQ
Sbjct: 561 DPDFLGELSKALAVDIDRLEKDIYEQAGEEFNIGSPKQLGPILFDKLKLVDKPKKTKTGQ 620

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  TA+D+      D+ I+ +ILEWRQ  K++STY D+LPN IN +T R+HT Y+ A   
Sbjct: 621 YS-TAEDVLSYLAKDHQIVADILEWRQYRKLQSTYVDALPNEINPKTNRIHTVYAQAVAA 679

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A ++K   + 
Sbjct: 680 TGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENYVLLAADYSQIELRIIAALSKEDTMM 739

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F++  DIH   A+ +F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  + RSE+
Sbjct: 740 QAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLTRSES 799

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  Y+  +P +  Y+     F R+NGYVET+ GRR +  +INS  + +R   ER A+
Sbjct: 800 KELIDTYYETYPKLKAYMSNQVAFARENGYVETVLGRRRYLKDINSRNAIVRGAAERNAV 859

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI+++   E+    +KMLLQ+HDELVF+  ++E+     II   M
Sbjct: 860 NAPIQGSAADIIKLAMINIYNRFEEEGFKSKMLLQVHDELVFDAHKDELEIIKPIIKEEM 919

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A      + VPL V I V  NW E +
Sbjct: 920 ENA----FKMEVPLDVEIGVGQNWLEAH 943


>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
 gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
          Length = 917

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/983 (35%), Positives = 521/983 (53%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 123 TLAREAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +Y  L+ ++ +A+ IK     +N+    +   L
Sbjct: 183 LALIGDTVDNVPGVEKCGPKTAVKWLTQYDTLDGVIEHAADIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            R+LV + T   +T  LE     L  +      L        F   +  V          
Sbjct: 242 GRQLVTVDTSCDLTPHLESIEASLKSDGEARDLLRDIFARYGFKTWLREVD--------- 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                            S+ ++       E  P  +    +   
Sbjct: 293 ---------------------------------SAPAEGGGADAPEGEPAPVIAADV--- 316

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I   +    W  K++     +F   T  +D   ++ + ++ S    K 
Sbjct: 317 ------VREYDTIQTWEQFDAWFAKIDAAALTAFDTETTALDPMLARLVGLSFSVEPGK- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+          +     E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 370 AAYLPVAHRGPDMP---------EQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           Y I++ G   D +L SYV++S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YDIALNGIEHDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 480 LAQAAEYAAEDADITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDA 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 RLHAQSTEIATRLIELEGEAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   +LA++M++Q+HDELV EVPE E++   + +   M     
Sbjct: 839 GTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGANWEEAH 917


>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
          Length = 927

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/993 (35%), Positives = 522/993 (52%), Gaps = 88/993 (8%)

Query: 1   MQKENH----LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSR 53
           M   N     L LVDGSS++YRA++A P L          P  AI G  NML  LL    
Sbjct: 6   MTDRNPDAPLLVLVDGSSYLYRAYHAMPDLRAVPSDPQSAPTGAIRGMINMLQALL---- 61

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           KE    H AV+FD    TFR  +YP YKA+R  +P+ L  Q+  +    +  G+P + + 
Sbjct: 62  KEYPTEHMAVVFDAAGATFREALYPQYKAHRAPMPDDLRVQIEPIDEVIRLLGLPVLRVP 121

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
             EADD+I T    A  +G+ V I S DKDL QLV     + DT+  +  DI  V  ++G
Sbjct: 122 DVEADDVIGTLAKTAAAQGWRVVISSGDKDLSQLVDERITIIDTMSGKVRDIAGVQAEFG 181

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           +PP  MV  Q L GD++DN+PG+  +G KTAA  LQ YG+L+ I+ +A  IK     EN+
Sbjct: 182 VPPALMVDYQTLVGDAVDNVPGVDKVGPKTAAKWLQAYGSLQAIVEHAHEIKG-VAGENL 240

Query: 234 LEYAETARLSRKLVMLRTDVPITIP------LEHLILEDCNGPRLISFLKALEFTKLINR 287
               +   L+R+L+ +RTD  +         L+ L     + P L  F +   F  L+  
Sbjct: 241 RRALDWLPLARQLLTIRTDCDLDGHVPGLPALDALRRRAPDVPALRDFYQRYGFRGLLRA 300

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +       A                            T  + Q   L+D  ++       
Sbjct: 301 LDDGSSETAP---------------------------TAASGQGELLADAPAQ------- 326

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                               Y  + +   +  W+Q+L +    +    T ++D   ++ +
Sbjct: 327 ----------------PPLRYETVRDWHTLDGWLQRLRSAPLVALDTETTSLDEMAARLV 370

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            I+ S    +          ++ L+       T       E+L+ L+ + E+    K G 
Sbjct: 371 GISFSVAPGE--------AAYLPLAHEDP--GTAGQLPLDEVLARLRPWLEDPAAAKCGQ 420

Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKS 523
           +IKYD+ VL  +GI ++G+  D ML SYVL+     H++ S+A++ L       +++   
Sbjct: 421 HIKYDQHVLANHGILVQGYVHDTMLQSYVLE-VHRPHNLESLAERHLGRSAMRYEDLCGK 479

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
             + IP  ++   +   +A E++   L +  +L P+L  +  L     L+  +  V+ +M
Sbjct: 480 GAAQIPFARVPIERAAPYACEDAEQCLAVHQVLWPQLQAQPALQRIYELEVAVSGVLWRM 539

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+ ID   L++ S  + + + +LE   + L+G  FNL SPKQ+ ++ + +LK P   
Sbjct: 540 ERHGVLIDAAELQRQSQALGERIRALEAEAHALAGMPFNLGSPKQIAEVFYDRLKLPVLK 599

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT TG   T  + LE++   D P+   +LE R L K+KSTY D LP  IN  T RVHT +
Sbjct: 600 KTATGAPSTDEEVLEKL-AEDYPLPARVLEHRSLVKLKSTYTDKLPTMINPATGRVHTHF 658

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           + A  +TGRLAS EPNLQNIPI+T  G++IR AFI+PP   + SADYSQIELRI+AH+++
Sbjct: 659 AQAVAVTGRLASAEPNLQNIPIRTPEGRRIRAAFIAPPGHVIASADYSQIELRIMAHLSQ 718

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + FE  LD+HR  AAE+FGV+ E V+P+ RR+AKTINF +IYG+SP+ LA  L I
Sbjct: 719 DPALLRAFEQGLDVHRATAAEVFGVSPEHVTPEQRRYAKTINFGLIYGMSPYGLAKALGI 778

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
             S A  YI+RYF RF G+  Y+E+T+   R  GYVET+FGRR+   EI SP    R   
Sbjct: 779 DASAAKSYIERYFERFAGVRAYMEQTRAQARARGYVETVFGRRLVLPEIQSPNGPRRAAA 838

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAAINAP+QG+AAD+ + +M++V ++L++ +  T+M+LQ+HDELVFEVP EE+      
Sbjct: 839 ERAAINAPMQGTAADLIKMSMVAVQRALDEQQRRTRMVLQVHDELVFEVPNEEVDWVRTE 898

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M         LRVPL  ++ V  NW++ +
Sbjct: 899 VPRLMAAVA----TLRVPLVASVGVGANWEQAH 927


>gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50]
 gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50]
          Length = 904

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/980 (33%), Positives = 521/980 (53%), Gaps = 84/980 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+Q+ + E    +   
Sbjct: 2   KKTLLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVQDHKAE----YAVC 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++++PDYK++RP +PE L  Q+  +  A +A G P + I+G EADDII T
Sbjct: 57  VFDARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G    + + DKDL QLV P   L +T+  E +D+  V  K+G+PPE++V   
Sbjct: 117 LARQASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNNKFGVPPERIVDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTA   L E+G+++ ++  A  +K      N+ E      L+
Sbjct: 177 MLVGDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKG-VAGNNLREAIPNFPLT 235

Query: 244 RKLVMLRTDVPITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R L+ ++ D  +T      E L   + +   L +      F   +  +            
Sbjct: 236 RTLLTVKCDCDLTGHVSDWEDLAWRERDAATLTALFDRYGFRTWLRELTGDQ-------- 287

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                              ++    ++   PQ +    L     
Sbjct: 288 -----------------------------------ERLPTGDARAVPQAVAPAELD---- 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I +      W+  +E     +    T ++D   ++ + ++++        
Sbjct: 309 -------YRIITDWAAFDAWMALVEDAPLVALDTETTSLDEMQARLVGLSMAVKPGV--- 358

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I ++    +   G      E+++ L+ + E+    K+ H+ KYD  V    G
Sbjct: 359 -----ACYIPVAHRGPE--AGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANEG 411

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           +S+ G   D ML +YVL+S R    +  +AQ++L       +++       I  D+++ +
Sbjct: 412 VSLAGVAEDTMLQAYVLESHRGV-GLNDLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVA 470

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               ++ E+S+  LQL  +LRP++  ++ L     L+  +  V++ +E  G+++D   L 
Sbjct: 471 LAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELG 530

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + S ++ + +L+LE+  Y+L+G+ FNL+SPKQLG+ILF ++  P   KT  G   T  + 
Sbjct: 531 RQSHKLGQEMLALEQRAYELAGQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEV 590

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L ++   D P+ + +LE+R LSK+KSTY D LP  IN  T RVHT YS A+ +TGRLAS 
Sbjct: 591 LSKL-AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASS 649

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+ G+++R AFI+    KL+SADYSQIELRI+AH++    L + F    D
Sbjct: 650 DPNLQNIPVRTEAGRRVREAFIAEQG-KLLSADYSQIELRIMAHVSDDANLQRAFAAGED 708

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  A+E+FGV + +V  + RR AK INF +IYG+  F LA+ L I R  A  YI RYF
Sbjct: 709 IHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYF 768

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  Y++ T+   R  GYVET+FGRR+   +I +     R   ERAAINAP+QG+A
Sbjct: 769 TRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTA 828

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM++V   L+  +L T+M++Q+HDELV EVP+EE+   ++ +   M        
Sbjct: 829 ADLIKMAMVAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVA---- 884

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL   + +  NW++ +
Sbjct: 885 TLRVPLVAEVGMGTNWEQAH 904


>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 932

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/985 (35%), Positives = 516/985 (52%), Gaps = 66/985 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                L LVDGSS++YRA++A   L+   DG+P  A+ G  NML +L    R + +  + 
Sbjct: 4   SNPKTLLLVDGSSYLYRAYHAMAQLT-APDGVPTGALYGVLNMLRRL----RADYVHDYC 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD     FR+E++ DYKA RP +P+ L PQ   +    +  G P + +   EADD+I
Sbjct: 59  AVVFDAKGKNFRHEMFADYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVVPQVEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T      + G+ V I + DKD+ QLV+    L +T+  E +D + V  K+G+ P+++  
Sbjct: 119 GTLAVQGGEAGWDVVISTGDKDMAQLVNERVTLVNTMSGETLDTDGVKAKFGVRPDQIRD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD +DN+PG+   G KTA   L+ Y  L  ++ +A  IK  K  EN+        
Sbjct: 179 YLALMGDKVDNVPGVEKCGPKTAVKWLEAYETLAGVMEHAGEIKG-KVGENLQAALSQLP 237

Query: 242 LSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           LS  LV ++TDV +    +  LE L        +L +  K   F   +            
Sbjct: 238 LSYDLVTIKTDVDLHAELSDGLESLRRTPPKWAQLAADFKRWGFKSWLK----------- 286

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                              E E       ++  F S         + + P +   E+   
Sbjct: 287 -------------------EAESRMHEAAESDLFGSADVGEIAALALEMPSEKQPEKAAA 327

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  +         + KL           T ++DA +++ + I+I+    +
Sbjct: 328 P-----EKLDYQAVTTETQFAALLDKLSKAERIGIDTETTSLDAMNAQLVGISIAFEAGE 382

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     +I L    +  +  +    ++ L  LK   EN    KIG N+KYD+ V  
Sbjct: 383 --------AAYIPLGHSMT--AAPQQLDLQDTLGRLKPHLENGSLKKIGQNLKYDQHVFA 432

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKI 533
            YGI++RG   D ML SY+++S    H +  ++++WL     T + +       I    +
Sbjct: 433 NYGIALRGIAGDAMLASYIVESHLG-HGLDELSERWLGLPTITYESLCGKGAKQISFADV 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  Q  E+A ++++  L+L   LR ++  EK L +Y  L+ P+  V+ +ME  G+ ID+ 
Sbjct: 492 AVEQAAEYAAQDADFALRLEAHLRAQMD-EKQLEMYLNLELPVAQVLFEMERNGVHIDRA 550

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWK 651
            L   S+E+   LL LEE  +  +G+ FNL+SPKQL +ILF K+  P+    KT +G   
Sbjct: 551 ELAAQSSELGAALLKLEEQAFQTAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTASGGIS 610

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LEQ+   D P+ K ILE R L+K+KSTY D LP  IN RT RVHT YS A  +TG
Sbjct: 611 TNEAVLEQL-APDYPLPKIILENRSLAKLKSTYTDKLPEMINPRTGRVHTTYSQAVAITG 669

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   F
Sbjct: 670 RLASSNPNLQNIPIRTAEGRRVRRAFTAPAGSLIVSADYSQIELRIMAHLSGDKTLMAAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A ++
Sbjct: 730 QNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNF 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF R+PG+ EYI++TK      GYVET+FGRR++  +I +  ++ R   ERAAINAP
Sbjct: 790 IDRYFARYPGVAEYIQRTKEEAAAQGYVETLFGRRLYLPDIRAKNANARAGAERAAINAP 849

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +QG+A+D+ +RAMI+V   L    L +K+++Q+HDELV EV E E+ T  +++   M + 
Sbjct: 850 MQGTASDLIKRAMIAVSSRLHSDGLESKLIMQVHDELVLEVVENELETVKEMLPQVMAEV 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL   + V  NW + +
Sbjct: 910 AQG--RLNVPLLAEVGVGGNWDDAH 932


>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
 gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
          Length = 932

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/982 (35%), Positives = 532/982 (54%), Gaps = 61/982 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DGSS++YRAF+A P L R  DG P  A+ G  NML +L     +E  A + A I
Sbjct: 2   KTLLLIDGSSYLYRAFHAMPDL-RSPDGAPTGAVYGMINMLRRL----EREVAADYSACI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+++YP YKA+RP +P+ L  Q+  V  A +A G P + + G EADD+I T 
Sbjct: 57  FDAKGKTFRDDLYPAYKAHRPPMPDDLRQQIAPVHAAVRALGWPLLMVDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   GF V I + DKD+ QLV+P   L +T+ EE +D   V  K+G+PP +++    
Sbjct: 117 AKNAAAAGFQVVISTGDKDMAQLVTPQVKLVNTMTEEWLDEAGVAGKFGVPPARIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           LTGD +DN+PG+   G KTA   L+ YG+L+ ++  A+ +   K  EN+        LSR
Sbjct: 177 LTGDKVDNVPGVDKCGPKTAVKWLENYGDLDTLMAQANEV-GGKVGENLRTALAWLPLSR 235

Query: 245 KLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +LV ++TDV +   L    ++L+    + P + +  + L F   +      Y    A  E
Sbjct: 236 RLVTIKTDVDLATELPQGFDNLLRPAVDRPAMSALCRELGFRTWLKE----YGDGTALTE 291

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV         +  A+  ++     +     S+ +  +  + +     +           
Sbjct: 292 PVA------PARPEAVADDLFAAAPVAADMPSAPAAASPALVTPTAEAR----------- 334

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  ++    +  W+ +L     A+F   TD++D   ++ + ++ +    +   
Sbjct: 335 -------YQTVLTEAALADWLARLAAAPRAAFDTETDSLDPMQARIVGVSFAVTPGE--- 384

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L+                +L+ LK + EN    K+  N  YD+ VL  +G
Sbjct: 385 -----AAYVPLAHVAPGVEP--QLDRDRVLAQLKPWLENPAAAKVLQNANYDRHVLANHG 437

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           I + G  +D MLM YVL +    H++ ++A++ L       ++I       I   ++   
Sbjct: 438 IRLAGVADDTMLMDYVL-ASHERHNMDAMAERELGLATIKYEDICGKGARQIGFAEVDLD 496

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +A E+++V L+L  +L  KL   +   +Y  ++ P   V+  ME TG+ ID+  L 
Sbjct: 497 TATRYAAEDADVTLRLRDVLAGKLDGAR-DTLYSSIELPTAAVLFAMERTGVLIDRAELA 555

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTTA 654
           + S  + + +L++E  +Y+L+G+ FNL+SPKQL DILF KL   +    KT +G + T  
Sbjct: 556 RQSQVLGEEMLAIETEVYELAGQPFNLNSPKQLSDILFNKLAIDTKGVKKTASGGYSTDE 615

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++   D P+ K +L +R L+K+KSTY D LP  IN  T RVHT YS AS +TGRLA
Sbjct: 616 SVLEKL-AEDYPLPKALLRYRGLAKLKSTYTDKLPAMINPDTGRVHTHYSQASVVTGRLA 674

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+TD G+++R AF++P    ++SADYSQIELRI+AH++    L   F   
Sbjct: 675 SSDPNLQNIPIRTDEGRRVREAFVAPAGSCIVSADYSQIELRIMAHLSGDAGLIAAFREG 734

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  A+E+FGV +E VS + RR+AKTINF +IYG+S F LA  L I    A  +I+R
Sbjct: 735 RDIHRATASEVFGVPLEAVSAEQRRYAKTINFGLIYGMSAFGLAKSLEIDNKAAQTFIER 794

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+ +Y+++T+   R+ G+VET+FGRR++  EI S  ++ R   ERAAINAP+QG
Sbjct: 795 YFARYPGVQDYMQRTREAAREQGWVETVFGRRLYLPEIRSSNAARRAGAERAAINAPMQG 854

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + AMI V   L+  +LA+++++Q+HDELV EVPE E       +   M      
Sbjct: 855 TAADLIKLAMIRVADWLQREQLASRLIMQVHDELVLEVPEAERERVCAALPQEMAAVAG- 913

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL   +    NW   +
Sbjct: 914 ---LAVPLVAEVGSGANWGAAH 932


>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
 gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
          Length = 919

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/983 (36%), Positives = 526/983 (53%), Gaps = 80/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVTAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++++ DYKANRP +P  L  Q+  +  A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLFADYKANRPSMPTDLALQIEPIHQAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + AE  G  V I + DKDL QLV+    L +T+  E +D E VI K+G+PPE++V  
Sbjct: 123 TLAHAAEARGMKVVISTGDKDLAQLVTERVTLVNTMSNELLDREGVIAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +Y  L+ ++ +A+ IK     +N+    +   L
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLTQYETLDGVVEHAAEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV + T   +   +E     L     +   L+   +   F      +      DA  
Sbjct: 242 ARKLVTVETACELKPQVESIEASLATLGESREALLPIFENYGFKTWRRELEAA-PADAPG 300

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P             AIE                                         
Sbjct: 301 DVPAGEAAVEPVPAAAAIE----------------------------------------- 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  +        W+ K+E     SF   T ++D   ++ + I++ST     
Sbjct: 320 -------RNYETVQTWPQFDAWMAKIEAAELTSFDTETTSLDPMVAQIVGISLSTEPGS- 371

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I ++ H   D+  +     E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 372 -------AAYIPVA-HRGPDAP-EQLPRDEVLAKLKPWLESAERRKVGQHLKYDAQVLAN 422

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           Y I++ G   D +L SYVL+S R+ HD+ S+A + L       +E+       I  D++ 
Sbjct: 423 YEIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAQQIGFDEVP 481

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                 +A E++++ LQL L + P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 482 LETAAAYAAEDADITLQLHLAMYPQVAREPGLKRVYAEIEMPVSLVLRRMERTGVLIDSA 541

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L + S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 542 RLDKQSHEIAVRLIELEREAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 601

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  IN RT RVHT Y+ A  +TGRL
Sbjct: 602 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMINARTGRVHTNYAQAVAVTGRL 660

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI++   L + F  
Sbjct: 661 ASNDPNLQNIPVRTAEGRRIREAFIASPGCRIVSADYSQIELRIMAHISEDESLLRAFSQ 720

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 721 GEDIHRATAAEVFGVTPLEVSNDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 780

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 781 RYFARYPGVANYMETTRAVAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 840

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   LE  KL ++M++Q+HDELV EVPE+E+    + +   M     
Sbjct: 841 GTAADLIKLSMIAVDGWLERDKLRSRMIMQVHDELVLEVPEDELALVREKLPEMMSGVA- 899

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +   +NW+E +
Sbjct: 900 ---KLKVPLVAEVGAGDNWEEAH 919


>gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62]
 gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62]
          Length = 930

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/986 (34%), Positives = 517/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +A  IK  K  EN+       
Sbjct: 177 DYLALIGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHAPEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L    K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHTELSDGIESLRRTAPKWAQLAVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEIPSEKRAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA +++ + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AVPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++     D ML SY+++S    H +  ++ +WL     T + +       I    
Sbjct: 431 ANYGIALNNIAGDAMLASYIIESHLG-HGLDELSGRWLGLETITYESLCGKGAKQISFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEARLRAQMD-DKQLEMYEKMELPVAQVLFEMECNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +PP   ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F++  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI+V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMINVRNWLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 907 VDGGL--LDVPLVAEVGVGENWEEAH 930


>gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090]
 gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2]
 gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
 gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090]
 gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
          Length = 930

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/986 (34%), Positives = 517/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +A  IK  K  EN+       
Sbjct: 177 DYLALIGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHAPEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L    K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHTELSDGIESLRRTAPKWAQLAVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEIPSEKRAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA +++ + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++     D ML SY+++S    H +  ++ +WL     T + +       I    
Sbjct: 431 ANYGIALNNIAGDAMLASYIIESHLG-HGLDELSGRWLGLETITYESLCGKGAKQISFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEARLRAQMD-DKQLEMYEKMELPVAQVLFEMECNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +PP   ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F++  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI+V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMINVRNWLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 907 VDGGL--LDVPLVAEVGVGENWEEAH 930


>gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088]
 gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088]
          Length = 908

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/987 (35%), Positives = 526/987 (53%), Gaps = 90/987 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQ    L LVDGSS++YRAF+A P L+    G P  AI G  +ML +L     ++  +S 
Sbjct: 1   MQNLAPLVLVDGSSYLYRAFHALPPLTTTK-GQPTGAIKGVVSMLKRL----HQDYASSP 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD    TFR+E++PDYKA RP +P+ L  Q+  +    +A G P I   G EADD+
Sbjct: 56  IVVVFDAKGPTFRDEMFPDYKAQRPPMPDELRTQIEPLHAIVKALGYPLICEPGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A ++G  V + + DKD+ QLV     L +T+ + ++D   V++K+G  P+KM+
Sbjct: 116 IGTLAKQASEQGMDVIVSTGDKDMAQLVDQHVTLVNTMSDTRLDPAGVMEKYGFGPDKMI 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENIL 234
              AL GD +DNIPG+ G+G KTA  L+Q  G L++I  N  R+        K     + 
Sbjct: 176 DYLALMGDKVDNIPGVAGVGEKTALGLIQGLGGLDDIYANLDRVADLPIRGAKSLAAKLE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              + A +S  L  ++ DV +                                       
Sbjct: 236 AERDAAYMSYTLATIKLDVELAFAP----------------------------------A 261

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D  N +P    ++         E E         +  +    + + I   QT        
Sbjct: 262 DLRNDQPDTAALSHWYQ-----ELEFRSWLAEIDASATVTRAEPAPIAPAQT-------- 308

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y  +   + + QW+  L+  G+ +F   T+++D   ++ + ++    
Sbjct: 309 ------------QYDCVTTEQALAQWISVLKEAGTFAFDTETNSLDYMEAELVGLSFCAE 356

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                    V   +       S+D          +L+ LK   E+  + K+G ++KYD  
Sbjct: 357 PGV-ACYVPVAHDYPGAPDQLSRDY---------VLNQLKDLLEDPQYQKVGQHLKYDMH 406

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPI 530
           VL  YGI++RGF  D ML SYVLDS    HD+ S+A+++L     + +++       +  
Sbjct: 407 VLANYGIALRGFAGDTMLESYVLDSVGGRHDMDSLAERYLGRRTISFEDVAGKGAKQLTF 466

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +++S  Q   +A E++++  QL+  L  +L   E L  VY  ++ P+  V+  +E  G  
Sbjct: 467 NQVSLEQAVPYACEDADITWQLYEYLTNQLTATESLHTVYTDIELPLAPVLQSIERNGAL 526

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           + +++L+Q S+ I   L+ LE   +DL+G  FNL S KQLG+ILF +LK P   KT  G 
Sbjct: 527 VSREILQQQSSVIGARLIELEAEAHDLAGRPFNLGSTKQLGEILFDELKLPIIKKTPKGA 586

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L ++   D P+ K +LE+R L+K+KSTY D LP  IN RT R+HT Y  A T 
Sbjct: 587 PSTGEEVLVELAL-DYPLPKVLLEYRGLAKLKSTYTDKLPTLINPRTGRIHTSYHQAVTA 645

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI++  G+ IR+AFI+P    +++ADYSQIELRI+AH++    L  
Sbjct: 646 TGRLSSSDPNLQNIPIRSVEGRAIRKAFIAPENHVIVAADYSQIELRIMAHLSGDAGLLT 705

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F   LD+H   AAE+FGV +++V+   RR AK INF +IYG+S F LA QL I R+E+ 
Sbjct: 706 AFNEGLDVHAATAAEVFGVALDEVTSDQRRSAKAINFGLIYGMSAFGLAKQLHIGRAESQ 765

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI  YF R+PG+ +Y+++T+    + GYVETIFGRR++  EIN+         ER AIN
Sbjct: 766 AYIDTYFQRYPGVLDYMDRTRQGAHERGYVETIFGRRLYLPEINARNKMRVQAAERTAIN 825

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAADI ++AM++V + L D  L +KM++Q+HDELVFEVP+ E+      ++ +ME
Sbjct: 826 APMQGSAADIIKKAMLAVDRFLRDSSLESKMIMQVHDELVFEVPKHELDALRAGVITAME 885

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      L VPL V + + +NW+E +
Sbjct: 886 SAA----QLAVPLLVEVGLGDNWEEAH 908


>gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121]
 gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121]
          Length = 925

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/982 (36%), Positives = 536/982 (54%), Gaps = 88/982 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + LVDGSS++YRAF+A P LS   DG P NAI G  +M+  L+    K    S   VIF
Sbjct: 21  PMILVDGSSYLYRAFHAIPPLST-SDGQPTNAIRGVTSMIKSLV----KTYSDSPIVVIF 75

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++YP+YKA RP +P+ L  Q+  +    +A G+P I I G EADD+I T  
Sbjct: 76  DAKGKTFRDDMYPEYKAQRPSMPDDLRLQIEPIHSIIKAMGLPLISIGGVEADDVIGTIA 135

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            I  + G  V + + DKD+ QLV+    L +T+ +  +DIE V  K+GI PE ++   AL
Sbjct: 136 KIVGETGREVIVSTGDKDMAQLVTDKVTLVNTMTDTLMDIEGVKNKFGIGPELIIDFLAL 195

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAET 239
            GD +DNIPG+PG+G KTA  LLQ  GNLE+I      I        K   + + +  + 
Sbjct: 196 MGDKVDNIPGVPGVGEKTALGLLQGLGNLESIYSRLDEIAGLSFRGAKTLSKKMEDNKDM 255

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +L  ++ DV +      L     N   L  +   LEF   +              
Sbjct: 256 AFLSYQLATIKCDVELDFDSIALCNAPQNKAELKEWFTKLEFKTWL-------------- 301

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                             L   T+  N  +T +           
Sbjct: 302 --------------------------------KELDKPTADENDAETEET---------- 319

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q      SY  +++ +    W+ K++     +F   T +++   ++ +  ++S    K  
Sbjct: 320 QIEAVEISYETVLDKEHFAIWLDKIQQAPLFAFDTETTSLNYMAAELVGFSVSVEAGK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   +I ++     +   +      +L  +K   E+   LK+G ++KYD  VL  Y
Sbjct: 378 ------AAYIPVAHDY--EGAPEQLDRDWVLEQIKPVLEDASQLKVGQHLKYDANVLANY 429

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
            I ++G   D ML SY+ +S  + HD+ S+A+K+LS+     +EI          ++I  
Sbjct: 430 DIELKGIEFDTMLESYIFNSTANRHDMDSLAKKFLSHKSVSFEEIAGKGAKQKTFNQIEL 489

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            Q   +A E++++  +L   +  KL    +L+ +++ ++ P++ V+++ME TG  ID DL
Sbjct: 490 EQAAFYAAEDADITFRLHQAIWAKLEKTPELVSIFKEIELPLVPVLAKMEQTGALIDPDL 549

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L + S+EI+  L  LE   ++++G+ FNLSSPKQL +ILF KL+ P   KT  GQ   TA
Sbjct: 550 LHEQSSEIATRLEELEIKAHEMAGQAFNLSSPKQLQEILFVKLELPILKKTPKGQPS-TA 608

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + + Q    D  + + I+E R LSK+KSTY D LP  I ++T R+HT Y  A T TGRL+
Sbjct: 609 EPILQELALDYELPRIIMEHRSLSKLKSTYTDKLPEMI-QKTGRIHTSYHQAVTATGRLS 667

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T  G++IR+AFI+P   KLI+ADYSQIELRI++H+++   L + F N+
Sbjct: 668 STDPNLQNIPIRTAEGRRIRQAFIAPEGYKLIAADYSQIELRIMSHLSQDPGLLEAFANN 727

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H+  AAE+F V +++V+ + RR AK INF +IYG+S F LA QL I R EA  YI+R
Sbjct: 728 KDVHKATAAEVFEVALDEVTGEQRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAQKYIQR 787

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y+E T+   R+ GYVET+FGRR++  +I +  + +R   ER AINAP+QG
Sbjct: 788 YFERYPGVRTYMENTREMAREKGYVETLFGRRLYLPDIKASNAMMRQAAERTAINAPMQG 847

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI +RAMI +H  L+D  L  KM+LQ+HDEL+FEV E +++ A + I+  ME     
Sbjct: 848 TAADIIKRAMIEMHAWLKDTDLDIKMILQVHDELIFEVKESDLSAAQEKILDIMENTSA- 906

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              + VPL V   + + W + +
Sbjct: 907 ---IDVPLLVEAGIGDTWDQAH 925


>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
 gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
          Length = 918

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/990 (34%), Positives = 523/990 (52%), Gaps = 86/990 (8%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     
Sbjct: 1   MPKIADNPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYK----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +  AV+FD    TFRNE+Y +YKA RP +P+ L  Q+  +    +A G+P + I G EAD
Sbjct: 56  TQMAVVFDAKGKTFRNEMYSEYKAQRPPMPDDLRNQIEPLHRIIKALGLPLVCISGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A KEG AV I + DKD+ QLV     L +T+    +    V +K+G+ PE+
Sbjct: 116 DVIGTIATQASKEGRAVLISTGDKDMAQLVDDNITLINTMTNTIMGPAEVTEKFGVGPER 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
           ++ L AL GD  DNIPG+PG+G KTA  +L   G++ NIL    ++ +      K     
Sbjct: 176 IIDLLALQGDKADNIPGLPGVGEKTALAMLTGVGSVANILAAPEKMPELGFRGSKTMPAK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           I+E+A+  +LS +L  ++ DV +      L +E  N   LI     +EF + +  V    
Sbjct: 236 IIEHADMLKLSYELATIKLDVELEQDWHQLSIEPANKDELIKCYGEMEFKRWLAEV---- 291

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                        ++   +K  A E+E                                 
Sbjct: 292 -------------LDNKGDKATAAESE--------------------------------- 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                 +        Y  I+  + + +W++KL++    +    T +++   +K + I+ +
Sbjct: 306 --DDAPAAKLDIEVEYDIILTLEQLDRWIEKLKSAELIAIDTETTSLNYMEAKLVGISFA 363

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               K      +   +ID           +      +   L+   E+E+  K+G N+KYD
Sbjct: 364 VEAGK-AAYLPLAHDYIDAP---------EQLDKAVVFEKLQPLLEDENLKKVGQNLKYD 413

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
             +    GI + G   D ML SYV +S  S H++  +A K+L +     +EI       +
Sbjct: 414 ISIFANAGICLLGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQL 473

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             ++IS      +A E++++ L+L   L  +L    +L  V+  ++ P+++ +S +E  G
Sbjct: 474 TFNQISLETAAPYAAEDADITLRLHQHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQG 533

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  LL Q S E+++ +  LE   ++++G+ FNLSSPKQL ++ F KL +P   KT  
Sbjct: 534 VLIDSMLLGQQSEELARKIDELEHKAHEIAGQAFNLSSPKQLQELFFEKLGYPVIKKTPK 593

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G    TA+++      D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+
Sbjct: 594 GAPS-TAEEVLVELALDYPLPKIILEHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQAN 652

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S EPNLQNIPI+T+ G++IR AFI+P  KK+++ADYSQIELRI+AH+++   L
Sbjct: 653 AATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDKGL 712

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH+  AAE+F V+  +V+   RR AK +NF +IYG+S F LA QL IPRSE
Sbjct: 713 LTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRSE 772

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+ +Y+E+T+      GYV T+FGRR++   I    +  R   ERAA
Sbjct: 773 AQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAA 832

Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMI++   +E +      M++Q+HDELVFEV E +  +    +  
Sbjct: 833 INAPMQGTAADIIKKAMINIANWIETETDGEIIMIMQVHDELVFEVDEAKADSLQAKVCE 892

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M  A      L V L     + +NW++ +
Sbjct: 893 LMAAAA----KLDVELLAEAGIGDNWEQAH 918


>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
 gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
          Length = 917

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/983 (35%), Positives = 517/983 (52%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + + G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLVS    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 123 TLAREAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LALIGDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            R LV + T   +   LE     L  +      L        F   +  V          
Sbjct: 242 GRTLVTVETACDLAPHLESIEASLKTDGEARDLLRDIFARYGFKTWLREVE--------- 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                            S+ ++       E  P  +    +   
Sbjct: 293 ---------------------------------SAPAEGGGADAPEGDPAPVIAADI--- 316

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I        W  K++     +F   T  +D   ++ + ++ S    K 
Sbjct: 317 ------VREYDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMTARLVGLSFSIEPGK- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+          +     ++L+ LK + E+    K+G ++KYD  VL  
Sbjct: 370 AAYLPVAHRGPDMP---------EQLPIDDVLARLKPWLESADRKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 480 LEQAAAYAAEDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDA 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL+  S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 LLQAQSTEIATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQ 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFTRYPGVAHYMEDTRTTAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   +LA++M++Q+HDELV EVP++E++   + +   M     
Sbjct: 839 GTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGANWEEAH 917


>gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76]
 gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385]
          Length = 983

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/993 (34%), Positives = 518/993 (52%), Gaps = 72/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 46  MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 161

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 162 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIR 221

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+       
Sbjct: 222 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKG-KVGENLQAALPQL 280

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 281 PLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 330

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 331 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 369

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 370 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 425

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK    N    KIG N+KYD+ V 
Sbjct: 426 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVF 475

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 476 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 534

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 535 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 593

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 594 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 653

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 654 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 712

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T+ G+K+RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 713 GRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 772

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 773 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 832

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 833 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 892

Query: 891 PIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQI 943
           P+QG+A+D+ +RAMI V + L + +       L +K+++Q+HDELV EV E E+    + 
Sbjct: 893 PMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVKEK 952

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M K       L VPL   + V  NW+E +
Sbjct: 953 LPQIMAKVDGGL--LDVPLVAEVGVGENWEEAH 983


>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
 gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
          Length = 917

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/983 (35%), Positives = 520/983 (52%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLVS    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 123 TLAREAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +Y +L+ ++ +A  IK     +N+    +   L
Sbjct: 183 LALIGDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEHLILE-DCNGPR---LISFLKALEFTKLINRVATTYDCDAAN 298
            R LV + T   +   LE +      +G     L        F   +  V          
Sbjct: 242 GRTLVTVETACDLAPHLESIEASLKTDGEARHLLRDIFARYGFKTWLREVE--------- 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                            S+ ++       E  P  +    +   
Sbjct: 293 ---------------------------------SAPAEGGGADAPEGDPAPVIAADI--- 316

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I        W  K++     +F   T  +D   ++ + ++ S    K 
Sbjct: 317 ------VREYDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMTARLVGLSFSIEPGK- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     DL          +     ++L+ L+ + E+    K+G ++KYD  VL  
Sbjct: 370 AAYLPVAHRGPDLP---------EQLPIDDVLARLRPWLESADRKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI++ G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q   +A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 480 LEQAAAYAAEDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDA 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL+  S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 LLQAQSTEIATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQ 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFTRYPGVAQYMEDTRTAAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   +LA++M++Q+HDELV EVP++E++   + +   M     
Sbjct: 839 GTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGANWEEAH 917


>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
 gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
          Length = 949

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/984 (34%), Positives = 532/984 (54%), Gaps = 48/984 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFLVD  + IYRA+YA     R    GL  +AI GF N L  +L+  +     +H AV
Sbjct: 2   KKLFLVDAYAIIYRAYYAFIRNPRVNSKGLNTSAIFGFVNTLEDVLKREK----PTHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y  YKA R   PE +   +P+++   +A+ IPA+EI G+EADD+I T
Sbjct: 58  AFDPKGKTFRHEAYEQYKAQREATPEDIRLAVPIIKNLIKAYNIPALEIPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIP-PEKM 179
               AE+ GF V +++ DKD  QLVS    +Y        E +  + V  K+ +   E++
Sbjct: 118 MAKKAEQAGFEVFMLTPDKDYGQLVSDHIFMYRPKHTGGFETMGPDEVKAKYDLDSHEQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L GD+ DNIPG PG+G KTA  LL+E+G+++ +L     +K    +  I E  E 
Sbjct: 178 IDLLGLMGDASDNIPGCPGVGEKTAVKLLKEFGSIDTLLSRTGELKGA-LKTKIEENKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              SR L  ++ DVPI    + L +   N   L +    LEF  +  ++AT +     + 
Sbjct: 237 IIFSRFLATIKVDVPIDFDEKSLEIVPRNETELRALFDELEFRTMSAKLATPFSSFPPDQ 296

Query: 300 E-PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P +  +       +++  E + +    T + S  +    +     T     LE +   
Sbjct: 297 PLPSIRQVKPKPAGQMSLFDEAESNDVKPTEKQSDAAPADEQQVVVSTSGMKGLENIPH- 355

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I         + +L    S  F   T  +D F S  + ++    + + 
Sbjct: 356 --------KYVLIDTKVKRSNLISQLFIQKSVCFDTETTGLDMFTSDLVGMSFCFAEGE- 406

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L    ++        +KE+L   K FFEN+   KIG N+K+D L+L +
Sbjct: 407 -------AYYVSLPEDKTE--------SKEVLREFKAFFENDRIEKIGQNMKFDLLMLWQ 451

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK-SRKSSIPIDKI 533
           YGI ++G   D M+  Y++      H +  +A+ +L+Y     ++++    K+   I  +
Sbjct: 452 YGIELKGKLFDTMIAHYLVQP-ELRHGMDYLAEIYLNYRTIHFEDLVGAKGKNQADIRTV 510

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +++ ++A E+++V  +L  +L  +L  + L +++  ++ P++ V++ ME TG++ID +
Sbjct: 511 DINKLCDYAAEDADVTFRLKQILEKELKADALENLFYEIEMPLMQVLATMEHTGVRIDSE 570

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKT 652
            L+Q S  ++  +L LE+ I+ L+G +FN+SSP Q+G+ILF +LK      KTKTGQ+  
Sbjct: 571 ALRQSSVILTDEMLKLEKEIHQLAGYEFNVSSPMQVGEILFDRLKLDDKAKKTKTGQYS- 629

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T++D+ +     +PII  IL++R L K+ STY D+LP  I+  T +VHT Y+     TGR
Sbjct: 630 TSEDILEKLQSKHPIIGKILDYRGLKKLLSTYIDALPQLISPITGKVHTSYNQTVAATGR 689

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIPI+   G++IR+AFI        SADYSQIELRI+AH++    + + F 
Sbjct: 690 LSSTNPNLQNIPIRDAQGKEIRKAFIPDADCLFFSADYSQIELRIMAHLSGDKNMLEAFN 749

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   AA+I+ + +E+V+  MRR AKT NF IIYGIS F L+ +L IPR+EA + I
Sbjct: 750 SGHDIHTATAAKIYKIPLEEVTSDMRRKAKTANFGIIYGISVFGLSDRLSIPRAEAKELI 809

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF  +P + +Y++      ++ GYVET+ GR+    +INS  S +R   ER AINAPI
Sbjct: 810 EGYFATYPDVKKYMDNAIQKAKEMGYVETLLGRKRFLPDINSQNSIVRGFAERNAINAPI 869

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AM+ +   LE+  L  KM +Q+HDEL F VP+ E+    + ++  ME A 
Sbjct: 870 QGTAADIIKIAMVRIQNRLENESLQAKMTMQVHDELNFTVPKNELEALQKAVIEEMENA- 928

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              I L+VPL  +  V  NW E +
Sbjct: 929 ---IKLQVPLIADCGVGANWLEAH 949


>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
 gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
          Length = 921

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/986 (34%), Positives = 522/986 (52%), Gaps = 75/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRAF+A P L R   G P +A  G    +  +LQ  +KE  A +
Sbjct: 1   MSDIKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPTSAATGAIRGMINMLQALKKEVHADY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+ IYPDYKANR  +PE L  Q+  +    +  G P + I+G EADD+
Sbjct: 60  AACVFDASGPTFRDAIYPDYKANRAPMPEDLRAQIEPIHEVVRLLGWPVLAIKGVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +G  V I S DKDL QLV     + DT+  ++ D+  V+ ++G+PP  MV
Sbjct: 120 IGTLARAAAGQGMRVVISSGDKDLSQLVDEHVTIIDTMNGKRRDVAGVMAEFGVPPALMV 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GD++DN+PG+P +G KTAA  L EYG+L+ ++ +A  IK     EN+    +  
Sbjct: 180 DFQALVGDAVDNVPGVPKVGPKTAAKWLAEYGSLDALVAHAGAIKG-VAGENLRGALDWL 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDC 294
             +R+LV ++TD  ++  +  L   D           L  F +   F  L   +      
Sbjct: 239 PTARELVTIKTDCDLSGHVAGLPAMDAIAFGAEQTGNLADFYQKYGFKSLARALK----- 293

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                                   +   +  +    P    +  
Sbjct: 294 -------------------------------------PEAAPAGASGDLFDAPDASTVAT 316

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
             +       + +Y  I+    +  W+ ++     A+    T ++D   ++ + I+ S  
Sbjct: 317 RAQH-----RDVAYDIILTWAQLDDWLARVRAAPLAAIDTETTSLDELRAEIVGISFSVE 371

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                        +I L+ H   D+  +  L  E+L+ LK + E+    K+G ++KYD+ 
Sbjct: 372 PGA--------AAYIPLA-HDGPDTPAQLPLA-EVLARLKPWLEDPKHPKLGQHVKYDRH 421

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPI 530
           V   +GI +RG+  D ML SYVL+  +  H +AS+A++       + +++       IP 
Sbjct: 422 VFANHGIEVRGYVHDTMLQSYVLEVHK-PHGLASLAERHTGRTGISYEDLCGKGAKQIPF 480

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            ++   +   ++ E+S+  L +  +L P+L  ++ L     L+    + + ++E  G+ I
Sbjct: 481 SQVPVDKAAAYSCEDSDQTLDVHRVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLI 540

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D L   S  + + +L LE+  YD++G+ FNL SPKQLG+I F KL  P   KT TG  
Sbjct: 541 DADRLAAQSHALGQRILQLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGAR 600

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++   D P+   +LE R LSK+K TY D L    + RT RVHT Y+ A  +T
Sbjct: 601 STDEEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVAVT 659

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T  G+++R AF++PP + + S DYSQIELRI+AHI+    L + 
Sbjct: 660 GRLSSNDPNLQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRA 719

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LD+HR  AAE+FGV + +V+ + RR+AK INF +IYG+S + LA  L I  + A +
Sbjct: 720 FHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKN 779

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF R+PG+ +Y++ TK   +  GYVET+FGRR++  EINSP    R+  ERAAINA
Sbjct: 780 YIDRYFQRYPGVWQYMQDTKAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAERAAINA 839

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AAD+ ++AM+ V  +L+  K    M++Q+HDELVFE+PE ++      +   M  
Sbjct: 840 PMQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHDELVFELPEGDVDWLRAEVPRIMAG 899

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L+VPL   + V  +W + +
Sbjct: 900 VA----ELKVPLLAEVGVGPDWDKAH 921


>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
 gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
          Length = 916

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/977 (35%), Positives = 528/977 (54%), Gaps = 67/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS++YRA++A P L R  +  P  AI G  NML +L     K+  A + A +
Sbjct: 2   KTVLLVDGSSYLYRAYHALPDL-RNRNNEPTGAIHGVLNMLRRL----HKDYHADYSACV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+EIYP+YKA+RP +P  L  Q+  +    +A G P + I G EADD+I T 
Sbjct: 57  FDAKGKTFRDEIYPEYKAHRPSMPMELAVQIEPLHACIRAMGWPMLIIDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A +      I + DKD+ QLV     L +T+  E +D   V+ K+G+PPE+M+    
Sbjct: 117 ARQAVEADMRCIISTGDKDIAQLVDSHISLVNTMSNEILDEASVLAKFGVPPERMLDYLM 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DN+PG+  +G KTA   L +YG+L+NI+ +A  IK     +N+    +    +R
Sbjct: 177 LVGDTSDNVPGVHKVGPKTAVKWLTQYGSLDNIIAHADEIKGA-IGDNLRTALDWFDTAR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L+ ++ DV + I +  L L+  +  +L    + L+    +  +                
Sbjct: 236 QLITIKCDVDLPIKITDLALQPQDTEQLARLYEQLDMRMSLRELRQQRG----------- 284

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                     A +       T+  +Q ++      K    Q+                  
Sbjct: 285 ----------ASDPSQPGSATVSENQLAAGDGGNDKAVMGQS------------------ 316

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  I    ++  W+ +L+T    S    T +++   +K + I+             +
Sbjct: 317 -VTYQTIFTDAELDDWLTRLDTAQLVSIDSETTSLNPMQAKLVGISFCVESH-HAAYLPL 374

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +  +          +       L  LK + E+    K+G N+KYDK V   + I + 
Sbjct: 375 MHRYPGVP---------QQLSFDRALKKLKPWLESATKPKLGQNLKYDKHVFANHDIQLN 425

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQE 540
           G   D +L SYVL+S R  H++ S+A + L     +  ++       I  D+++     +
Sbjct: 426 GIAHDTLLQSYVLESHR-PHNMDSLALRHLDVKTISYDDVTGKGVKRIGFDEVAIDTATQ 484

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L   L P +    +L H+Y  ++ P++ V+ ++E  G+ +D  LL++ S
Sbjct: 485 YAAEDADITFRLHQALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQS 544

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + L +LE+  YD+SG+ FNL+SPKQ+ +ILF +LK P   KT TG    T +D+ Q
Sbjct: 545 HELGEKLHALEQQAYDISGQPFNLNSPKQIQEILFHQLKLPIVKKTPTGVPS-TDEDVLQ 603

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D P+ K +L +R LSK+KSTY D LP  +++ T RVHT YS A  +TGRLAS +PN
Sbjct: 604 QLALDYPLPKLLLNYRSLSKLKSTYTDKLPLMMDRNTGRVHTNYSQAVAVTGRLASSDPN 663

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T  G++IR AFI+P   ++ISADYSQIELRI+AHI++   L + F    DIH 
Sbjct: 664 LQNIPVRTSEGRRIREAFIAPAGYRIISADYSQIELRIMAHISQDEGLLKAFAAGEDIHS 723

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAEI G+ + +V  + RRHAK INF +IYG+S F LATQL I RS A  Y++RYF R+
Sbjct: 724 ATAAEILGIPLNQVDQEQRRHAKVINFGLIYGMSEFGLATQLGIERSAARAYMERYFARY 783

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +  Y+++T+   R+ GYVET+ GRR+   EIN+   + R   ERAAINAP+QG+AADI
Sbjct: 784 PKVESYMQQTREKARRLGYVETVLGRRLWLPEINNANGNRRQGAERAAINAPMQGTAADI 843

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+VH  L   KL +K+++Q+HDELV EVPE E+      +   M       + L 
Sbjct: 844 IKLAMIAVHSWLHKEKLHSKLIMQVHDELVLEVPENEVALIKSSLPKYMGDV----LQLD 899

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL + I V +NW++ +
Sbjct: 900 VPLVIEIGVGDNWEQAH 916


>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
 gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
          Length = 904

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/980 (33%), Positives = 520/980 (53%), Gaps = 84/980 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+Q+ + E    +   
Sbjct: 2   KKTLLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVQDHKAE----YAVC 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++++PDYK++RP +PE L  Q+  +  A +A G P + I+G EADDII T
Sbjct: 57  VFDARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G    + + DKDL QLV P   L +T+  E +D+  V  K+G+PPE++V   
Sbjct: 117 LARQASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNSKFGVPPERIVDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTA   L E+G+++ ++  A  +K      N+ E      L+
Sbjct: 177 MLVGDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKG-VAGNNLREAIPNFPLT 235

Query: 244 RKLVMLRTDVPITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R L+ ++ D  +T      E L   + +   L +      F   +  +            
Sbjct: 236 RTLLTVKCDCDLTGHVSDWEDLAWRERDAATLTALFDRYGFRTWLRELTGDQ-------- 287

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                              ++    ++   PQ +    L     
Sbjct: 288 -----------------------------------ERLPTGDARAVPQAVAPAELD---- 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I +      W+  +E     +    T ++D   ++ + ++++        
Sbjct: 309 -------YRIITDWAAFDAWMALVEDAPLVALDTETTSLDEMQARLVGLSMAVKPGV--- 358

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I ++    +   G      E+++ L+ + E+    K+ H+ KYD  V    G
Sbjct: 359 -----ACYIPVAHRGPE--AGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANEG 411

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           +S+ G   D ML +YVL+S R    +  +AQ++L       +++       I  D+++  
Sbjct: 412 VSLAGVAEDTMLQAYVLESHRGV-GLNDLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVP 470

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               ++ E+S+  LQL  +LRP++  ++ L     L+  +  V++ +E  G+++D   L 
Sbjct: 471 LAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELG 530

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + S ++ + +L+LE+  Y+L+G+ FNL+SPKQLG+ILF ++  P   KT  G   T  + 
Sbjct: 531 RQSHKLGQEMLALEQRAYELAGQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEV 590

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L ++   D P+ + +LE+R LSK+KSTY D LP  IN  T RVHT YS A+ +TGRLAS 
Sbjct: 591 LSKL-AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASS 649

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+ G+++R AFI+    KL+SADYSQIELRI+AH++    L + F    D
Sbjct: 650 DPNLQNIPVRTEAGRRVREAFIAEQG-KLLSADYSQIELRIMAHVSDDANLQRAFAAGED 708

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  A+E+FGV + +V  + RR AK INF +IYG+  F LA+ L I R  A  YI RYF
Sbjct: 709 IHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYF 768

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  Y++ T+   R  GYVET+FGRR+   +I +     R   ERAAINAP+QG+A
Sbjct: 769 TRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTA 828

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM++V   L+  +L T+M++Q+HDELV EVP+EE+   ++ +   M        
Sbjct: 829 ADLIKMAMVAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVA---- 884

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL   + +  NW++ +
Sbjct: 885 TLRVPLVAEVGMGTNWEQAH 904


>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
 gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
          Length = 920

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/982 (33%), Positives = 531/982 (54%), Gaps = 75/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    GL  +AI GFCN L ++L         +H  V 
Sbjct: 3   KLFLLDAYALIYRSYYAFLRTPRINSKGLNTSAIMGFCNTLNEVLTKEH----PTHIGVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   TFR+E++P YKA R + PE +   +P+++   +A  IP +++ GFEADD+I T 
Sbjct: 59  FDH-GKTFRHEVFPAYKAQREETPEDIRQSVPIIKQILEAMRIPILQVDGFEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGI-PPEKMV 180
                 +G    +++ DKD  QL+ P   ++        E +  + V  K+GI  P +++
Sbjct: 118 ATRFGTDGIDTFMLTPDKDYGQLIGPRVFIFRPRHGGGYETLGEKEVESKYGIPTPAQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GDS DN PG PG+G KTAA L+ ++G+++N+L +   IK  K R+ I    E  
Sbjct: 178 DLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNLLQHTDEIKG-KLRDKIENAVEDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S+ L  +RTDVP+ + L+ L +E  +  +L    + LEF  L N++    +    N+E
Sbjct: 237 KMSKLLATIRTDVPLQLSLDELKVEQPDEVKLRRIFEELEFKTLANKLLNKSELKPKNVE 296

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                        Q    S  T   N ++ P+K   E  + +  
Sbjct: 297 T----------------------------QLDLFSVNTP--NGQEEPEKTNYETHKTVPH 326

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I N +++ +      T    S    T + DA  ++ + ++ S  + K   
Sbjct: 327 ------EYKLIDNEEEMDRLCDFFMTKEFVSIDTETTSTDAIRAELVGLSFSVEENK--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L  +  +          + +   K  +EN+  LKIG NIKYD  VL+ YG
Sbjct: 378 -----AFYVPLPANREE--------ALKYIRIFKPLYENDKILKIGQNIKYDYKVLNNYG 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK-SRKSSIPIDKISD 535
           ++++G   D M+  Y++      H++  +A+  L Y     +E++    K    +  +S 
Sbjct: 425 VTLQGEMFDTMIAHYLIQPELH-HNMDYMAETLLGYRTIHIEELIGPKGKKQKNMRDLSP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + E+A E++++ L+L  LL P+L    L  ++  ++ P++ V++ ME+ G+ +D + L
Sbjct: 484 TDICEYAAEDADITLRLKHLLEPRLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTA 654
           ++ S   +  +   E+ IY  +GE FN+ SPKQ+GDILF KL+      KTKTGQ+ T+ 
Sbjct: 544 QETSRIFTDRMKQYEQEIYKEAGETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+ +    +P+++NIL +R + K+ STY D+LP  IN RT  +HT ++ A T TGRL+
Sbjct: 604 EVLQSLEA-KHPVVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQTATGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH++    + + F   
Sbjct: 663 SSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA+I+  +I+KV+   R+ AK  NF IIYGI+ + LA ++ IP  EA + I+ 
Sbjct: 723 HDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNGEARELIQD 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YFH FP +  Y+E+ K   R  GY ET+F RR +  +INS  +++R   ER AINAPIQG
Sbjct: 783 YFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAINAPIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AM+ + K  ++  + +KM+LQ+HDEL F V  EE     +I++  M+ AC  
Sbjct: 843 TEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEEREQVERIVIEEMQNAC-- 900

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL  +    +NW E +
Sbjct: 901 --QLNVPLTADAGWGSNWLEAH 920


>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
 gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
          Length = 930

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/986 (34%), Positives = 521/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M   + L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MATIHTLLLVDGSSYLYRAYHAMAQLT-APDGAPTGALYGVLNMLRRL----RSDYVHDY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 56  CVVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++ 
Sbjct: 116 IGTLAKMASEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+       
Sbjct: 176 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKG-KVGENLQAALPQL 234

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L    K   F   +           
Sbjct: 235 PLSYDLVTIKTDVDLHTELSDGLESLRRTSPKWSQLAVDFKRWGFRTWLK---------- 284

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E           F S +         +T  +   E+  
Sbjct: 285 --------------------EAESRMHEAADGDLFGSDTIGEQAALDMETSSERLPEKA- 323

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA  +  + I+I+    
Sbjct: 324 ----VAPEKLDYQAVTTEAQFAALLDKLSQADTIGIDTETTSLDAMDASLVGISIAFQAG 379

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 380 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPVLKKIGQNLKYDQHVF 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 430 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 488

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 489 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 547

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  + + FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 548 AELARQSAELGAELMKLEQEAYAAASQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 607

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 608 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 666

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 667 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 726

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 727 FQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 786

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 787 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 846

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V + L    L +K+++Q+HDELV EVPE E+    + +   M K
Sbjct: 847 PMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L+VPL   + V  NW+E +
Sbjct: 907 VDEGM--LKVPLVAEVGVGENWEEAH 930


>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
 gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
          Length = 907

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/980 (35%), Positives = 524/980 (53%), Gaps = 80/980 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L LVDGSSF+YRAF+A P + R   G P NAI G  NML +L    R++  A +  
Sbjct: 2   STKTLLLVDGSSFLYRAFHAIPEM-RNQHGEPTNAIYGVHNMLRRL----RQDFPADYSL 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++YP YKANRP +P  L+ Q+  +     A G     ++G EADD+I 
Sbjct: 57  CVFDAKGKTFRDDLYPQYKANRPSMPADLVAQIEPLHQLIAASGWKIAMVEGVEADDVIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A ++G    + + DKDL QLV     L +T+  E +D+  V  K+G+PPE +V  
Sbjct: 117 TLARQASRDGVRCIVATGDKDLAQLVDEHVTLINTMNNETLDMAGVKAKFGVPPELIVDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+  +G KTA   L ++G+L+N++ NA  I       N+    E    
Sbjct: 177 LALMGDTVDNVPGVEKVGPKTAVKWLLQHGSLDNLMRNADTISG-VVGANLRNALEWLPQ 235

Query: 243 SRKLVMLRTDVPITIPL-EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +R+LV ++ DVP  +PL   L+    +   L    + L F   +  +    +        
Sbjct: 236 ARQLVTVKCDVP-DLPLYAELVAPTPDKAALRQLFERLNFKTWLRELNAATEV------- 287

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                    K  + + +S     +++ Q                
Sbjct: 288 ------------------------AKAPEQAEVSAVPELVSTAQV--------------- 308

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y KI+  + +  W+ +L           T  +D   ++ + ++ +     +   
Sbjct: 309 -----QYQKILTGEQLDAWLARLLAADLVCLDTETTGLDVMDARLVGMSFAITPH-EAAY 362

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             +   +  +      D+T         L+ L+ + E+E   K+G N+KYDK +   +GI
Sbjct: 363 LPLAHRYPGVPDQLDLDAT---------LARLRPWLESEQHKKLGQNLKYDKHIFANHGI 413

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQ 537
           ++RG  +D +L SYVL+S +S HD+ S+A + L     + +E+       I  D++    
Sbjct: 414 ALRGISDDTLLESYVLESHKS-HDMDSLALRHLGVKTISYEEVAGRGAKQICFDQVDLDI 472

Query: 538 VQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E++++ LQL   L P++     L HVY  ++ P + V+  ME  G+ +D +LL 
Sbjct: 473 ATRYAAEDADITLQLHQSLAPEITGKTGLQHVYRDIELPAMQVLFVMERNGVLLDANLLH 532

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E+   L++LE   ++ + + FNL+SPKQ+ +ILF KLK P   KT +G   T  + 
Sbjct: 533 VQSHELGVKLIALEARAHEAAEQPFNLNSPKQIQEILFDKLKLPVKKKTPSGAPSTDEEV 592

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L+++   D P+ K +LE+R ++K+KSTY D LP  +N+ T RVHT YS A  +TGRLAS 
Sbjct: 593 LQELAL-DYPLPKILLEYRGMAKLKSTYTDKLPKMVNRATGRVHTSYSQAVAVTGRLASS 651

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI++  G++IR AFI+P    +++ADYSQIELRI+AH++    L Q F  + D
Sbjct: 652 DPNLQNIPIRSAEGRRIREAFIAPSGSCIVAADYSQIELRIMAHLSGDAGLLQAFAKNED 711

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +HR  AAEIF      V+ + RR+AK INF +IYG+S F LA QL I R  A  YI RYF
Sbjct: 712 VHRATAAEIFMTTPVDVTTEQRRYAKVINFGLIYGMSAFGLAKQLGIERGAAQAYIARYF 771

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ +Y++ T+   +Q GYVET+FGRR+   EINS  +  R   ERAAINAP+QG+A
Sbjct: 772 ARYPGVRDYMDSTREQAKQQGYVETVFGRRLWLPEINSSNAMKRQGAERAAINAPMQGTA 831

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI V   LE  KL T++++Q+HDELV EVP++E++     +   M        
Sbjct: 832 ADLIKLAMIQVQGWLETEKLKTRLIMQVHDELVLEVPDDELSLIKASLPGLMCHVA---- 887

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
           NL VPL V +    NW   +
Sbjct: 888 NLNVPLLVEVGSGKNWDVAH 907


>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
          Length = 929

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/986 (35%), Positives = 523/986 (53%), Gaps = 67/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRA++A   LS   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSK-PTLLLVDGSSYLYRAYHAMAQLS-APDGAPTGALYGVLNMLRRL----RADYVHDY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 55  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++ 
Sbjct: 115 IGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIR 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+       
Sbjct: 175 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVVEHAAEIKG-KVGENLQAALPQL 233

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L    K   F   +           
Sbjct: 234 PLSYDLVTIKTDVDLHTELSDGLESLRRTSPKWSQLAVDFKRWGFRTWLK---------- 283

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E           F S +         +T  +  +E   
Sbjct: 284 --------------------EAESRMHEAADGDLFGSDTIGEQAALDMETSSEKIIEHAP 323

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL           T ++DA ++  + I+I+    
Sbjct: 324 AP-----EKLDYQAVTTEAQFAALLDKLAQADKIGIDTETTSLDAMNAALVGISIAFQAG 378

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K         ++I +    +  +  +    + +L YLK   EN    KIG N+KYD+ V 
Sbjct: 379 K--------AVYIPVGHSLT--AAPEQLDLQYVLGYLKPHLENPALKKIGQNLKYDQHVF 428

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 429 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 487

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 488 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 546

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 547 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 606

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 607 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 665

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 666 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 725

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A  
Sbjct: 726 FQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKT 785

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 786 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 845

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V + L    L +K+++Q+HDELV EVPE E+ +  + +   M K
Sbjct: 846 PMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDSVKEKLPQIMAK 905

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L+VPL   + V  NW+E +
Sbjct: 906 VDDGM--LKVPLVAEVGVGMNWEEAH 929


>gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190]
          Length = 975

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/986 (34%), Positives = 515/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 46  MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 161

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 162 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 221

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 222 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKG-KVGENLRAALPRL 280

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 281 PLSYDLVTIKTDVDLHAELSDGIESLRRTAPKWAQLVVDFKRWGFRTWLK---------- 330

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 331 --------------------EAESNMNTGSTDDVFGSDSIGEQAALNAEMPSEKQAEKA- 369

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 370 ----TAPERLDYQAVTTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIAFQAG 425

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK    N    KIG N+KYD+ V 
Sbjct: 426 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVF 475

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 476 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 534

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 535 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 593

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  + + FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 594 AELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 653

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 654 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 712

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 713 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 772

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 773 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 832

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 833 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 892

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 893 PMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 951

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 952 VDGGL--LDVPLVAEVGVGENWEEAH 975


>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
 gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
          Length = 917

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/983 (35%), Positives = 519/983 (52%), Gaps = 82/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G P + ++G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 123 TLAREAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +Y +L+ ++ +A+ IK     +N+    +   L
Sbjct: 183 LALIGDTVDNVPGVEKCGPKTAVKWLSQYESLDGVIAHAADIKG-VVGDNLRRALDFLPL 241

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            RKLV + T   +   LE     L  +      L        F   +  V          
Sbjct: 242 GRKLVTVDTSCDLAPHLESIEASLKTDGEARELLRDIFARYGFKTWLREV---------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                   +   +     +   + + + +               
Sbjct: 292 -----------------------ENAPAEGGGADAPEGEPAPVIAADV------------ 316

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I   +    W  K++     +F   T  +D   ++ + ++ S    K 
Sbjct: 317 ------VREYDTIQTWEQFDAWFAKIDAAALTAFDTETTALDPMLARLVGLSFSVEPGK- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+          +     E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 370 AAYLPVAHRGPDMP---------EQLPLDEVLTRLKPWLESADRKKVGQHLKYDAQVLAN 420

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           Y I + G   D +L SYV++S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 421 YDIELNGIEHDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVA 479

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 480 LAQAAEYAAEDADITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDA 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 540 RLHAQSTEIATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 599

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 600 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F  
Sbjct: 659 ASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQ 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 719 GEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 779 RYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   L   +LA++M++Q+HDELV EVPE E++   + +   M     
Sbjct: 839 GTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVA- 897

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 898 ---KLKVPLVAEVGAGANWEEAH 917


>gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399]
          Length = 931

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/986 (34%), Positives = 515/986 (52%), Gaps = 65/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++ +WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDSMLASYIIESHLG-HGLDELSGRWLGLETITYESLCGKGAKQISFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V + L    L +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQIMAK 907

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 908 VGGGL--LDVPLVAEVGVGENWEEAH 931


>gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
 gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
          Length = 907

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/987 (34%), Positives = 521/987 (52%), Gaps = 91/987 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A P L+    G+   A+ G  NML +L    +K+   S 
Sbjct: 1   MSDKTPLILVDGSSYLYRAYHALPPLTNSK-GVATGAVKGVINMLRRL----QKDYPDST 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR++IY +YKANRP +P+ L  Q+  +    +  G+P +   G EADD+
Sbjct: 56  IAVVFDAKGKTFRDDIYKEYKANRPPMPDDLREQVQPIHDIVRGMGLPLLCEPGVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A +    V + + DKD+ QLV+    L +T+ +  +D + V+ K+GIPPE ++
Sbjct: 116 IGTLARQASEADCHVIVSTGDKDMAQLVNERVTLVNTMNDTVMDPQGVVDKFGIPPELII 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENIL 234
            L AL GD +DNIPG+PG+G KTA  LLQ  G L  I  +  +I+       K     + 
Sbjct: 176 DLLALMGDKVDNIPGVPGVGEKTALGLLQGLGGLNQIYASLDQIEGLPFRGAKTMAAKLE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           +  + A LS  L  + TD+ + +    L     +   L+   K L               
Sbjct: 236 KERDNAYLSYTLATIATDLELPLVYADLENAPPDNVALLDLFKEL--------------- 280

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                          E KG   E E            ++L+D                  
Sbjct: 281 ---------------EFKGWIDELEG-----------AALADDAP--------------- 299

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
               ++       Y  +++     +W+ +L      +F   T +++   ++ + ++ +  
Sbjct: 300 ----AEVDTREQHYVTVLDQNSFDEWLARLSAAPLFAFDTETTSLNYMEAEIVGLSFAV- 354

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           ++ +     +   +        +D+         +L+ LK   E+    K+G N+KYD  
Sbjct: 355 ERGEAAYVPLAHSYPGTPAQLDRDA---------VLAALKPLLEDPDKAKLGQNLKYDAS 405

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPI 530
           VL RY I+M+G   D ML SYVLDS  + HD+ S+A K+L       +++       I  
Sbjct: 406 VLARYDIAMQGIAFDTMLESYVLDSTGTRHDMDSLALKYLGRSTTHFEDVAGKGAKQITF 465

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQ 589
           DK+   +   +A E++ V L L   L PKL     L  V   ++ P++ V+S+ME  G  
Sbjct: 466 DKVGIEEAAAYAAEDAEVTLALHETLWPKLQETPSLASVLTDIELPLVPVLSRMERCGAL 525

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D++ L + S E+ + L +LEE  ++++G+ FNL SPKQLG ILF KL+ P   KT  G 
Sbjct: 526 LDEERLWEHSRELGQRLQALEEEAHNVAGQVFNLGSPKQLGQILFEKLELPVLKKTPKGA 585

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
              TA+++ Q    D P+ K ++E R LSK+KSTY D LP  IN  T R+HT Y  A T 
Sbjct: 586 PS-TAEEVLQELALDYPLPKLLIEHRGLSKLKSTYTDKLPGMINSHTGRIHTSYHQAVTA 644

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+T+ G++IR+AFI+    ++++ADYSQIELRI+AH+++   L  
Sbjct: 645 TGRLSSSDPNLQNIPIRTEEGRRIRQAFIAAEGYQIVAADYSQIELRIMAHLSEDPGLLA 704

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F  +LD+H   AAE+FGV ++ VS + RR AK INF +IYG+S F LA QL + R EA 
Sbjct: 705 AFRENLDVHSATAAEVFGVPLDSVSGEQRRKAKAINFGLIYGMSAFGLARQLHLDRGEAQ 764

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI  YF R+PG+ +Y+ +T+    + GYVET+FGRR++  EIN      +   ER AIN
Sbjct: 765 RYIDVYFERYPGVRQYMVRTRALAHEQGYVETLFGRRLYLPEINVRNKMRQQAAERTAIN 824

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI + AM++V   + D  +  KM++Q+HDELV EV E ++      +   M 
Sbjct: 825 APMQGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDELVLEVAESQLDPVCDELCRLMS 884

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A     +L VPL V      NW E +
Sbjct: 885 AAA----DLAVPLLVEAGRGANWDEAH 907


>gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14]
 gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14]
          Length = 937

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/992 (34%), Positives = 519/992 (52%), Gaps = 71/992 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKG-KVGENLRAALPRL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRCTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPERLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK    N    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQISFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHK------LATKMLLQIHDELVFEVPEEEITTASQII 944
           P+QG+A+D+ +RAMI V + L + +      L +K+++Q+HDELV EVPE E+    + +
Sbjct: 848 PMQGTASDLIKRAMIDVSRWLSECEASLWDCLKSKLIMQVHDELVLEVPEAELDFVKEKL 907

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              M K       L VPL   + V  NW+E +
Sbjct: 908 PQIMAKVDGGL--LDVPLVAEVGVGENWEEAH 937


>gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354]
          Length = 955

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/996 (38%), Positives = 563/996 (56%), Gaps = 61/996 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  + HL+LVDGS++I+RA++  P L+   +G PV A+ G+  MLWKL ++  K    +H
Sbjct: 1   MADKQHLYLVDGSAYIFRAYHRLPPLTN-PEGTPVGAVYGYTTMLWKLAEDLDKAEGPTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+ D  + +FRNEIY  YKANRP  PE L+PQ PL+R AT+AF +P IE  G EADD+
Sbjct: 60  LAVVLDKSSQSFRNEIYDQYKANRPDPPEDLVPQFPLIRDATRAFSLPMIEEPGVEADDM 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-----PTTCLYDTVKEEKIDIEHVIKKWGIP 175
           IA+Y   A  +G+ VTI+S+DKDLMQLV       T  + DT+K  +I    V +K+G+ 
Sbjct: 120 IASYARAAAAQGWDVTIVSSDKDLMQLVGTSEQGGTIDMLDTMKSARIGPAEVEEKFGVA 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE +  + AL GDS+DNIPGI G+G KTA  L+Q++G+L   L  A  +K+ K +E +LE
Sbjct: 180 PELVGDVLALMGDSVDNIPGIFGVGPKTATKLIQDHGSLTAALDAAPEMKKSKLKERLLE 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           +   A LSR LV L+ D  + I ++ + L       L +FL    F  L+ R+      +
Sbjct: 240 HRADAELSRILVTLKEDCELPIAIDDMKLGKIPPEPLAAFLTQHGFGSLLRRL------E 293

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N  P               E    +  +   S+  +                      
Sbjct: 294 GGNGGPGPKTQLHPAKPQNPGEAHAPQGNSQPLSEMPA---------------------- 331

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                  I+  +Y  + + + + +W++K       +    T  +DA  +  + ++++   
Sbjct: 332 -------IDRSTYECVQSVEQLDEWIEKAFAARLVAVDTETSALDAMQADLVGVSLAIGP 384

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +      +                 +   T+  L+ LK   E++  +K+G NIKYD  V
Sbjct: 385 NQ-ACYIPLGHFNEGGGGDDMFAEKPQQIETEVALAKLKPLLESDAVVKVGQNIKYDLNV 443

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRS------SHDIASIAQKWLSYT---RKEILKSRKS 526
           L R+GI++   ED M++S+ LD+GRS       H +  +AQ+ L +T    KEI  + K 
Sbjct: 444 LARHGIAVAPIEDTMIVSFALDAGRSQDGIGGGHGMDELAQRHLGHTCLTFKEICGTGKK 503

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +IP  ++   +  E+A E+++V  +L+  L+P+L VE    +YER+D+P+I VV+ ME  
Sbjct: 504 AIPFGEVPIDRATEYAAEDADVTSRLYTHLKPRLAVEGGTRIYERVDRPLIPVVAGMERH 563

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++D+  L  +S   ++    LE  I++++G++F + SPKQLGDILF K+ +  G K K
Sbjct: 564 GIKVDRQQLAALSERFARETARLEGEIHEIAGQEFTVGSPKQLGDILFDKMGYKGGKKGK 623

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +GQ+ T    LE+++    PI   +LEWRQL+K+KSTY D+L   IN +T RVHT YSL 
Sbjct: 624 SGQYSTDQSVLEKLDATGAPIATKVLEWRQLAKLKSTYTDALQQAINPKTNRVHTSYSLV 683

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              TGRL+S +PNLQNIPI+T++G++IR+AF++     L++ADYSQIELR+ AH+A + P
Sbjct: 684 GAQTGRLSSTDPNLQNIPIRTEIGREIRQAFVADEGNVLLAADYSQIELRLAAHMADVAP 743

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    DIH   A E+FG     V    R  AKTINF+I+YGIS + LA +L I   
Sbjct: 744 LREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILYGISRWGLAGRLGIEAD 799

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA D I  YF RFPGI  YI  T   VR+ GY +T+FGR+  +  INS   + R  +ERA
Sbjct: 800 EAQDLIDIYFARFPGIQRYIVNTMETVRECGYSQTLFGRKTWFPRINSKNQAERQGSERA 859

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLA------TKMLLQIHDELVFEVPEEEITTA 940
           A+NAPIQG++ADI +RAM  +  +L +  L        +MLLQ+HDELVFE+PE  +  A
Sbjct: 860 AVNAPIQGTSADIIKRAMARMGPALAEAGLKPDAPDGVRMLLQVHDELVFEMPEGLVEQA 919

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +I   M  A  P + L VPL V I    NW + +
Sbjct: 920 KPVIRSVMADAAGPAVELSVPLGVEIGTGKNWDDAH 955


>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
          Length = 940

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/983 (34%), Positives = 534/983 (54%), Gaps = 56/983 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    G+  +AI GF N L  +L+        +H AV 
Sbjct: 2   KLFLIDAYALIYRSYYAFIKNPRINSKGMNTSAIFGFINSLEDVLKREN----PTHIAVG 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y  YKA R + PE +   +P ++   +A+ IP +E+  +EADD+I T 
Sbjct: 58  FDPKGPTFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPP-EKMV 180
              AEKEGF V +++ DKD  QLVS    +Y        E + I  V+ K+G+   ++++
Sbjct: 118 AKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGDYEIMGIPEVLGKYGLTSVDQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L GDS DNIPG PG+G KTA  LL E+G +EN+L N  ++K    ++ + E  E  
Sbjct: 178 DLLGLMGDSSDNIPGCPGVGEKTAQKLLAEFGTIENLLENTDKLKGS-LQKKVTENTEQI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R S+ L  ++TDVPI       I E  N  RL+     LEF   INR+    +      +
Sbjct: 237 RFSKFLATIKTDVPIQFDAAKCIREKVNEERLVEIYTELEFRTFINRMDREPEKAKTESK 296

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                  T   K  A          I+ S F   + + + +     P+   L  L+    
Sbjct: 297 AAPAPAKTGTRKKAAP------TGPIQGSLFEEFAAEPTTV-----PKYSTLANLKSTPH 345

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  +   +   +  + L      +F   TD +D   +  + ++ +  + +   
Sbjct: 346 ------TYHLVDTEEKRIELGRFLSEQDFFAFDTETDGIDPMKAGLVGMSFAVKENE--- 396

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +     +          ++L++     +N    KIG NIK+D LV+ +YG
Sbjct: 397 -----AWYVPVPAAREE--------ADKVLAHFSPALQNPKSFKIGQNIKFDILVVRKYG 443

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           I + G   D M+  Y+L+     H +  +A+ +L Y     +E++    +  + +  +  
Sbjct: 444 IRIAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYKTVRIEELIGPKGRKQLCMRDVPI 502

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            QV E+A E++++ L+L     P L  E L  ++  ++ P+I V+++ME TG+ +D   L
Sbjct: 503 PQVAEYAAEDADITLKLKNYFAPCLDKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIAL 562

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTA 654
           KQ S E++  L  LE+ IY+L+G KFN++S +Q+G++LF  LK      KTKTG + T+ 
Sbjct: 563 KQSSEELTTALKKLEKEIYELAGIKFNINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSE 622

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE++    +P+++ +LE+R L K+ STY D+LP  IN  T ++HT Y+ A T TGRL+
Sbjct: 623 EILEKMRS-KHPVVEKLLEYRGLKKLLSTYIDALPELINPETGKIHTSYNQAVTSTGRLS 681

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQNIP++ +LG++IR+AF +        SADYSQIELRI+AH+++   + + F +
Sbjct: 682 STNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMIEAFRS 741

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F LA +L IPR+E+ + I+
Sbjct: 742 GADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLNIPRAESKELIE 801

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P I  Y++++    ++ GYVETI+ R+    +INS  + +R   ER AINAPIQ
Sbjct: 802 GYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFLPDINSHNAIVRGYAERNAINAPIQ 861

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ +    E   L +KM+LQ+HDEL F V ++E+    QI++  ME A  
Sbjct: 862 GSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDEMEKVKQIVLDEMENA-- 919

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
             I L+VPL  +     NW E +
Sbjct: 920 --IQLQVPLIADCGEGVNWLEAH 940


>gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
 gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
          Length = 948

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/989 (33%), Positives = 545/989 (55%), Gaps = 54/989 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  LFL+D  + I+R +YA     R    G   +AI GF N L+ +++  + +    
Sbjct: 1   MAVQKRLFLLDAYALIFRGYYALIKNPRVNSKGQDTSAIMGFVNSLFDVIKREKPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD    + R E+Y DYKANR + PE +   +P+++   +A  +P IEI+G EADD
Sbjct: 57  HLAVAFDKGGSSERVEMYEDYKANRDETPEAIRIAVPIIQEILKAMHVPCIEIEGVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           +I T    AEKE + V +++ DKD  QLVS    +Y   +     E   I  V K++ + 
Sbjct: 117 LIGTLAKQAEKEDYQVFMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQKRFEVE 176

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++    + GD+ DNIPG+PG+G KTA   +++YG LE +L N  ++K  K +E ++
Sbjct: 177 RPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIKQYGGLEGLLENTDQLKG-KMKEKVI 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E AE  RLSRKL  + TD  +    E   L   +  ++      LEF +L ++    +  
Sbjct: 236 ENAELGRLSRKLATIMTDCDVKFDAEQYELSQPDADKVQEIFDELEFRRLKDQFIKIFSG 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +A +     +    T  K ++   +       + + F        + N+ +T +      
Sbjct: 296 EADSDTGAAVSGTETAKKLVSSAEKAANAGAGQYNLFGGDEPAIEERNTRKTIKD----- 350

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y  +     +  +++ L    S  F   T  +D   ++ + IA S  
Sbjct: 351 ---------TEHFYQSVAPGMAMNLFIKNLMKQTSVCFDTETTDLDPLQAELVGIAFSWE 401

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K          ++       +         ++++  L+ FFE E   KIG N+KYD  
Sbjct: 402 KTKG--------FYVPFPSEKEE--------VQKLIEALRPFFEAEEIEKIGQNLKYDIK 445

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIP 529
           VL +Y + ++G   D M+  Y+++     H++  +A+ +L+Y      + I K  K+   
Sbjct: 446 VLAKYDVEVKGKLFDTMIAHYLINPDM-RHNMDVLAETYLNYTPVSIEELIGKKGKNQKS 504

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +   Q  E+A+E+++V LQL    + +L       +++ ++ P++ V++ ME+ GI 
Sbjct: 505 MADVPVDQQTEYAVEDADVTLQLKEHFQKELGEANTQKLFDEIEIPLVQVLADMELEGIN 564

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +DQ+ L  +S  ++ ++ SLE++IY+ +GE+FN+ SPKQLG+ILF KLK      KT+TG
Sbjct: 565 LDQEFLGSLSEALNNDIASLEKSIYEEAGEEFNIGSPKQLGEILFDKLKLVDKPKKTRTG 624

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+  TA+D+      D+ I++++L++R LSK+KSTY D+LP  +N +T RVHT Y     
Sbjct: 625 QYS-TAEDVLSYLAPDHEIVQHVLDYRGLSKLKSTYVDALPAQVNAKTGRVHTDYMQTVA 683

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A +++   +
Sbjct: 684 ATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRNEDYVLLAADYSQIELRIIAALSQEETM 743

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F+   DIH   AA++F V I++V+ + R +AKT+NF IIYG+S F L+ Q  + RSE
Sbjct: 744 MKAFQEGEDIHASTAAKVFNVPIDEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLTRSE 803

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + + I  Y+  +P +  Y+ +  +F R+NGYV T+ GRR +  +INS  + +R   ER A
Sbjct: 804 SKELIDTYYKTYPKLRNYMSEQVDFARENGYVSTVLGRRRYLKDINSSNAVVRGAAERNA 863

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI +H  L+D  L TKMLLQ+HDELVF+V + E+    ++I   
Sbjct: 864 VNAPIQGSAADIIKIAMIKIHHKLKDKGLRTKMLLQVHDELVFDVYKSELEEVQELIKSE 923

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A      L VPL V + + +NW + +
Sbjct: 924 MEHA----FKLDVPLDVEVGLGDNWLDAH 948


>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
 gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
          Length = 940

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/989 (35%), Positives = 542/989 (54%), Gaps = 62/989 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  LFL+D  + I+R +YA     R    G+  +AI GF N L  +++  + +    
Sbjct: 1   MSNQKRLFLLDAFALIFRGYYAFIKNPRINSKGMDTSAIMGFTNSLLDVIKREKPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R  ++ DYKANR + PE +   +P ++   +A  IP IE  GFEADD
Sbjct: 57  HLAVCFDKGGSVSRTAMFTDYKANRDETPEAIRIAVPYIQEILKAMHIPVIEKAGFEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T    AEKE F V +++ DKD  QLVS    +Y   +     E   I  V  K+ I 
Sbjct: 117 IIGTLAKQAEKEDFKVFMVTPDKDFAQLVSENIFMYRPARMGNGIEIWGIPEVKAKFEIE 176

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++    + GD++DNIPG+PG+G KTA   L+EYG++E +L N   IK  K +E I 
Sbjct: 177 RPEQVIDYLGMMGDAVDNIPGLPGVGDKTAKKFLKEYGSMEALLENTHEIKG-KLKEKIE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E   LS++L  +  DVP+T   +   L   +   + +  + LEF ++       +  
Sbjct: 236 ANKELGLLSKELATILLDVPVTFEADSYALTSPDEQAVSALFEELEFRRMAENFKKIFGA 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
             AN+E                + +     + +  QF   +   S   +E +        
Sbjct: 296 PTANLET--------------PKEKAPSQPSQEGQQFDLFAAPGSGTITESS-------- 333

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           +        N+  Y  + +T    Q +++L    S  F   T +++A  ++ + IA S  
Sbjct: 334 VDNRKNLKTNDHWYQHVNSTLASAQLLKELLQQKSVCFDTETTSLNALEAELVGIAFSWN 393

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K                          T   EIL   K FFE+    KIGHN+KYD  
Sbjct: 394 KGKGY----------------YLALPEDKTEVLEILDPFKAFFEHPEIEKIGHNLKYDLK 437

Query: 475 VLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIP 529
           VL  Y I ++    D M+  Y+++     H++  +A+ +L+Y      + I K  K+   
Sbjct: 438 VLRNYDIHVKAPLFDTMIAHYLINPDM-RHNMDILAETYLNYSAQSITELIGKKGKNQGT 496

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           + ++S  Q  E+A+E++++ LQL      ++   K L +Y++++ P++ V++ ME  GI 
Sbjct: 497 MREVSLEQQTEYAVEDADITLQLKEYFHEEMSTAKTLELYQKVELPLVSVLTNMECEGIN 556

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D   LK +S  +++++  LE  I++++GE FNL+SPKQLG ILF KLK      KTKTG
Sbjct: 557 LDVSFLKSLSVTLAEDIQKLEAAIFEVAGENFNLASPKQLGLILFDKLKLVDKPKKTKTG 616

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+  TA+D+      D+PII +IL+WR L K+++TY D+LPN IN +T RVHT Y+ A  
Sbjct: 617 QYS-TAEDVLSYLAKDHPIISDILDWRSLQKLQNTYVDALPNEINPKTGRVHTIYNQAVA 675

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ GQ++R+AFI       L++ADYSQIELRI+A ++    +
Sbjct: 676 ATGRLSSNNPNLQNIPIRTERGQQVRKAFIPRDENHVLMAADYSQIELRIIAALSGDEGM 735

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F+N+ DIH   A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  + RSE
Sbjct: 736 LSAFQNNEDIHSATASKVFNVPLEEVTREQRGNAKTVNFGIIYGVSAFGLSQQTNLNRSE 795

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I+ Y+  +P +  Y++   +F R NGYV T+ GRR +  +INS  + +R   ER A
Sbjct: 796 AKELIETYYATYPKLRSYMQDQVDFARDNGYVSTVLGRRRYLKDINSQNAIVRGAAERNA 855

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI++   LE+    +KMLLQ+HDELVF+VP+EEI T  +++   
Sbjct: 856 VNAPIQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDELVFDVPKEEINTLQEMVKKE 915

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A      + VPL V+I + NNW E +
Sbjct: 916 MENA----FEINVPLIVDIGIGNNWLEAH 940


>gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002]
 gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002]
          Length = 913

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/983 (36%), Positives = 536/983 (54%), Gaps = 86/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R  +G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPEGGPTGALYGMINMLRRM----RKEVTAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ YP+YKANRP +PE L  Q+  + +A +A G P + I   EADD+I 
Sbjct: 63  CVFDAKGKTFRDDWYPEYKANRPSMPEDLARQIEPIHVAVRALGWPLLMIDRVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AEK G  V + + DKDL QLVS    L +T+  E +D + V+ K+G+PPE+++  
Sbjct: 123 TLCTEAEKLGMNVVVSTGDKDLAQLVSNRVTLVNTMTNETLDRDGVVAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +Y +L+ I+ +AS IK     +N+    +   +
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAVKWLMQYESLDGIVEHASEIKGA-VGDNLRRALDFLPM 241

Query: 243 SRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +RKLV +     +T  +    E L     +   L        F                 
Sbjct: 242 ARKLVTVERHCDLTGHIVSIEESLPSLPESREELRDLFTRHGF----------------- 284

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                        K    E EI              +D      ++  P           
Sbjct: 285 -------------KTWLREVEI--------------ADAVEGPETDVPPALSVD------ 311

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +   Y  +   + +  W+ K+      SF   T ++D   ++ + +++S    + 
Sbjct: 312 -----HERHYETVQTWEQLDAWLDKINAAELTSFDSETTSLDPMVAQIVGLSLSVEAGR- 365

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L+ H   D+        E+L+ LK + E+    K+G ++KYD+ VL  
Sbjct: 366 -------AAYVPLA-HRGPDAPV-QLPRDEVLAKLKPWLESADHKKVGQHLKYDEQVLAN 416

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI MRG   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 417 YGIEMRGVEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVA 475

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L P++ VE  L HVY  ++ P   V+ +ME TG+ ID +
Sbjct: 476 LDKAAEYAAEDADITLRLHQALYPQIAVENSLDHVYREIEVPTSRVLRKMERTGVLIDAE 535

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+Q S EI+  L+ LE + Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 536 KLRQQSGEIATRLIELEGSAYELAGGEFNLGSPKQIGQIFFEKLELPVIKKTPSGAPSTD 595

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N RT RVHT Y+ A  +TGRL
Sbjct: 596 EEVLQKL-AEDYPLPKILLEHRGLSKLKSTYTDKLPRMVNPRTGRVHTNYAQAVAVTGRL 654

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F  
Sbjct: 655 ASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQ 714

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  A+EIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 715 GEDIHRATASEIFNVTPLEVSSDQRRVAKVINFGLIYGMSAFGLASNLGITRDAAKMYID 774

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 775 RYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   +ED K+ T+M++Q+HDEL+ EVP+ E++   + +   M     
Sbjct: 835 GTAADLIKMSMIAVQNWIEDSKIGTRMIMQVHDELILEVPDAELSEVRKRLPELMCGVAA 894

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL   +    NW+E +
Sbjct: 895 ----LKVPLVAEVGAGLNWEEAH 913


>gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153]
          Length = 930

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/986 (34%), Positives = 516/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKG-KVGENLRAALPRL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHTELSDGIESLRRTAPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPSERLPEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----VAPEKLDYQAVTTEAQFSALLDKLSQADTIGIDTETTSLDAMNAALVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 907 VDGGL--LDVPLVAEVGVGENWEEAH 930


>gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013]
          Length = 930

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/986 (34%), Positives = 518/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNAALVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++ +WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDSMLASYIIESHLG-HGLDELSGRWLGLETITYESLCGKGAKQIGFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 907 VDGGL--LDVPLVAEVGVGENWEEAH 930


>gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160]
 gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160]
          Length = 913

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/979 (36%), Positives = 537/979 (54%), Gaps = 78/979 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R  +G P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPEGGPTGALYGMINMLRRM----RKEVTAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ YP+YKANRP +PE L  Q+  + +A +A G P + I+  EADD+I 
Sbjct: 63  CVFDAKGKTFRDDWYPEYKANRPSMPEDLARQIEPIHVAVRALGWPLLMIERVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AEK G  V + + DKDL QLVS    L +T+  E +D + V+ K+G+PPE+++  
Sbjct: 123 TLCTEAEKLGMNVVVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVVAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L +Y +L+ I+ +AS IK     EN+    +   +
Sbjct: 183 LSLVGDTVDNVPGVEKCGPKTAVKWLTQYDSLDGIVEHASEIKGA-VGENLRRALDFMPM 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +RKLV +     +   L  +     + P     L+ L                       
Sbjct: 242 ARKLVTVERHCDLNEHLVSIEESLSSRPESREELRDLFTR-------------------- 281

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                    K    E E+              +D      ++  P               
Sbjct: 282 ------HGFKTWLREIEV--------------ADVVEGPETDVPPALSVD---------- 311

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   Y  +   + +  W+ K+      SF   T ++D   ++ + +++S    +     
Sbjct: 312 -HERHYETVQTWEQLDAWLDKINAAELTSFDTETTSLDPMIAQIVGLSLSVEAGR----- 365

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                ++ L+ H   D+        E+L+ LK + E+    K+G ++KYD+ VL  YGI 
Sbjct: 366 ---AAYVPLA-HRGPDAPV-QLPRDEVLAKLKPWLESADHKKVGQHLKYDEQVLANYGIE 420

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQV 538
           MRG   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++  + 
Sbjct: 421 MRGVEHDTLLESYVLESHRT-HDMDSLALRHLGEKTIKYEDVAGKGAQQIGFDEVALDKA 479

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            E+A E++++ L+L   L P++  EK L HVY  ++ P   V+ +ME TG+ ID + L+Q
Sbjct: 480 AEYAAEDADITLRLHQALYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQ 539

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S+EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL  P   KT +G   T  + L
Sbjct: 540 QSSEIATRLIQLEGEAYELAGGEFNLGSPKQIGQIFFEKLGLPVIKKTPSGAPSTDEEVL 599

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           +++   D P+ K +LE R LSK+KSTY D LP  +N++T RVHT Y+ A  +TGRLAS +
Sbjct: 600 QKL-AEDYPLPKVLLEHRGLSKLKSTYTDKLPRMVNRQTGRVHTNYAQAVAVTGRLASND 658

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F    DI
Sbjct: 659 PNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDI 718

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  A+EIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI RYF 
Sbjct: 719 HRATASEIFNVTPLEVSSDQRRVAKVINFGLIYGMSAFGLASNLGITRDAAKMYIDRYFA 778

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+  Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+QG+AA
Sbjct: 779 RYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAA 838

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + +MI+V   +ED K+ T+M++Q+HDEL+ EVP+ E++   + +   M         
Sbjct: 839 DLIKMSMIAVQNWIEDSKIGTRMIMQVHDELILEVPDAELSEVRKRLPELMCGVAA---- 894

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L+VPL   +    NW+E +
Sbjct: 895 LKVPLVAEVGTGLNWEEAH 913


>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS]
          Length = 904

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/980 (33%), Positives = 520/980 (53%), Gaps = 84/980 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+Q+ + E    +   
Sbjct: 2   KKTLLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVQDHKAE----YAVC 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++++PDYK++RP +PE L  Q+  +  A +A G P + I+G EADDII T
Sbjct: 57  VFDARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G    + + DKDL QLV P   L +T+  E +D+  V  K+G+PPE++V   
Sbjct: 117 LARQASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNSKFGVPPERIVDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTA   L E+G+++ ++  A  +K      N+ E      L+
Sbjct: 177 MLVGDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKG-VAGNNLREAIPNFPLT 235

Query: 244 RKLVMLRTDVPITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R L+ ++ D  +T      E L   + +   L +      F   +  +            
Sbjct: 236 RTLLTVKCDCDLTGHVSDWEDLAWRERDAATLTALFDRYGFRTWLRELTGDQ-------- 287

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                              ++    ++   PQ +    L     
Sbjct: 288 -----------------------------------ERLPTGDARAVPQAVAPAELD---- 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I +      W+  +E     +    T ++D   ++ + ++++        
Sbjct: 309 -------YRIITDWAAFDAWMALVEDAPLVALDTETTSLDEMQARLVGLSMAVKPGV--- 358

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I ++    +   G      E+++ L+ + E+    K+ H+ KYD  V    G
Sbjct: 359 -----ACYIPVAHRGPE--AGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANEG 411

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           +S+ G   D ML +YVL+S R    +  +AQ++L       +++       I  D+++  
Sbjct: 412 VSLAGVAEDTMLQAYVLESHRGV-GLNDLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVP 470

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               ++ E+S+  LQL  +LRP++  ++ L     L+  +  V++ +E  G+++D   L 
Sbjct: 471 LAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELG 530

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + S ++ + +L+LE+  Y+L+G+ FNL+SPKQLG+ILF ++  P   KT  G   T  + 
Sbjct: 531 RQSHKLGQEMLALEQRAYELAGQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEV 590

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L ++   D P+ + +LE+R LSK+KSTY D LP  I+  T RVHT YS A+ +TGRLAS 
Sbjct: 591 LSKL-AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMISPATGRVHTHYSQAAVITGRLASS 649

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+ G+++R AFI+    KL+SADYSQIELRI+AH++    L + F    D
Sbjct: 650 DPNLQNIPVRTEAGRRVREAFIAEQG-KLLSADYSQIELRIMAHVSDDANLQRAFAAGED 708

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  A+E+FGV + +V  + RR AK INF +IYG+  F LA+ L I R  A  YI RYF
Sbjct: 709 IHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYF 768

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  Y++ T+   R  GYVET+FGRR+   +I +     R   ERAAINAP+QG+A
Sbjct: 769 TRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTA 828

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM++V   L+  +L T+M++Q+HDELV EVP+EE+   ++ +   M        
Sbjct: 829 ADLIKMAMVAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLMCDVA---- 884

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL   + +  NW++ +
Sbjct: 885 TLRVPLVAEVGMGTNWEQAH 904


>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
 gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
          Length = 933

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/986 (34%), Positives = 521/986 (52%), Gaps = 63/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRA++A   LS   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSK-PTLLLVDGSSYLYRAYHAMAQLS-APDGAPTGALYGVLNMLRRL----RADYVHDY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 55  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 115 IGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+       
Sbjct: 175 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKG-KVGENLQAALPQL 233

Query: 241 RLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +    +  LE L        +L    K   F   +           
Sbjct: 234 PLSYDLVTIKTDVDLHAELSDGLESLRRTSPKWSQLAVDFKRWGFRTWLK---------- 283

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E       +   F S +                 E++ 
Sbjct: 284 --------------------EAESRMHEAAEGDLFGSDTIGEQAALGLPENGGTSSEKII 323

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + +  P     Y  +         + +L    +      T ++DA ++  + I+I+    
Sbjct: 324 EHAPAP-EKLDYQAVTTEAQFAALLDRLSQADTIGIDTETTSLDAMNASLVGISIAFQAG 382

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 383 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPVLKKIGQNLKYDQHVF 432

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 433 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 491

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 492 VAIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 550

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 551 AELARQSAELGAELMKLEQEAYAAAGQLFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 610

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 611 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 669

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 670 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 729

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+H   AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A  
Sbjct: 730 FQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKT 789

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 790 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 849

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V + L D  L +K+++Q+HDELV EVPE E+      +   M  
Sbjct: 850 PMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPESELDLVKTNLPELMAD 909

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 910 VGKGL--LNVPLVAEVGVGENWEEAH 933


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
          Length = 935

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/988 (34%), Positives = 522/988 (52%), Gaps = 65/988 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M + + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD P  TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPPGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIKAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI- 174
           +I T    A  +G    +++ DKD  QLV+    +Y         E + +E V  K+ I 
Sbjct: 117 VIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKFDIQ 176

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  + 
Sbjct: 177 SPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E    S+ L  ++ DVPI + +  L+ E  +   L    + LEF  L+ R+      
Sbjct: 236 TNREMIIFSKFLATIKVDVPIRLDMNSLVREQADEDTLRKIFEELEFRTLMERIFKKESS 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            A+ I   + +      +G   E                          E TP     E+
Sbjct: 296 PASPIAGTLFNQENGPVQGNLFE--------------------------EFTPDHTNEEK 329

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
              L      +  Y  I   +   + ++KL T    +    T   D   ++ + ++ S  
Sbjct: 330 KSNLESLNSLSYDYQLIDTEEKRNEIIKKLLTSEILALDTETTGTDPMDAELVGMSFSIT 389

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +         +  ++ +     +          +I+   +  F+NE  LK+G NIKYD L
Sbjct: 390 EN--------QAFYVPVPAEREE--------AIKIVREFEPVFKNEKSLKVGQNIKYDML 433

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIP 529
           VL  YGI +RG   D M+  YVL      H++  +A+ +L Y     +E++    K    
Sbjct: 434 VLQNYGIEVRGKLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGPKGKGQKN 492

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +S  +V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G++
Sbjct: 493 MRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVNIESNGVR 552

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D + LKQ S   +  L S+E+ IY L+  +FN++SPKQ+G+ILF KLK      KTKTG
Sbjct: 553 LDTEALKQSSEHFTTRLQSIEKEIYTLAEGEFNIASPKQVGEILFDKLKIVEKAKKTKTG 612

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN +T R+HT ++   T
Sbjct: 613 QYVTSEEVLESLR-NKHDIIGKILEYRGLKKLLSTYIDALPQLINPKTGRIHTSFNQTVT 671

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   + 
Sbjct: 672 ATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMI 731

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F +  DIH   AA+I+ V+I++V+  MRR AKT NF IIYGIS F LA ++ + R EA
Sbjct: 732 DAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 791

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF  +P +  Y++K+    R++GYVETIF R+    +INS  + +R   ER AI
Sbjct: 792 KELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 851

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AM  +++  +   L  KM+LQ+HDEL F VP +E     Q+++  M
Sbjct: 852 NAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVEQVVIEEM 911

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           EKA      + VPLK +     NW E +
Sbjct: 912 EKA----YRMHVPLKADCGWGTNWLEAH 935


>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
 gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
 gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Acinetobacter baumannii ACICU]
 gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
 gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
 gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
          Length = 923

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/977 (35%), Positives = 546/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLKG-KLSQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +    
Sbjct: 236 QLASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ E+    TI+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+  D KD     +
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF-DAKDAYYVPL 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         ++  +    +++L+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 385 AHNY---------ENAPQQLDREQVLAQIKPILENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFEV        S+ I   M+      + + 
Sbjct: 853 IKLAMIEVDKILPKDQ--AKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGKNWDDAH 923


>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 937

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/984 (34%), Positives = 537/984 (54%), Gaps = 69/984 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGSS++YRA++A P L R   G P  A+ G   ML KL    R+E  ++H A +FD
Sbjct: 9   LLLVDGSSYLYRAYHALPDL-RNPAGEPTGAVRGMVAMLKKL----REEFPSAHAACVFD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++ YP+YKANR  +PE L  Q+  +       G P +EI G EADD+I T   
Sbjct: 64  AKGKTFRDDWYPEYKANRASMPEDLARQIAPIHAVVTLLGWPVLEIPGIEADDVIGTLAR 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   G  V + + DKDL QLV     L +T+  E++D+  V +K+G+PPE++V    L 
Sbjct: 124 AAAARGQRVIVSTGDKDLAQLVDAHVTLINTMSGERLDVAGVTEKFGVPPERIVDYLTLV 183

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+PG+  +G KTAA  + E+G+L+ ++  A  IK     EN+ +  +   L R+L
Sbjct: 184 GDAVDNVPGVEKVGPKTAAKWIAEHGSLDGVMAAADAIKG-VAGENLRKALDWLPLGRRL 242

Query: 247 VMLRTDVPITIPL---------EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           V ++TD  ++  L         + L   + +   L++F    +F    N + +     A 
Sbjct: 243 VTVKTDCDLSEALPGWNGTAAWDTLTWRETDRAALLAFYTHNDFRAWRNELESARAAAAP 302

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +    +    ++   A                      T   +    P          
Sbjct: 303 APQVAAAEAGEGQSALFADPA------------------GTGPADGGVAPA--------- 335

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                  +  Y  ++  +  + W  ++E     +    TD++D   ++ + ++ S    +
Sbjct: 336 ------VDKRYETVLAREAFEAWRARIEAADLVALDTETDSLDGMRARIVGLSFSVQPYE 389

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     +I L+   +           E+L+ LK + E+    K+G N+KYD  V  
Sbjct: 390 --------ACYIPLAH--TYPGAPDQLPLDEVLAALKSWLEDGSRAKLGQNVKYDTHVFA 439

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533
            +GI++RG+  D +L SYVL++ +  H + S+A + L     + +++       IP  ++
Sbjct: 440 NHGIAVRGYVHDTLLQSYVLEAHK-PHSLESLASRHLDRKGLSYEDVAGKGAQQIPFAQV 498

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             ++  E++ E+S++ L +  +L P+L    +L  VYER++ P   ++ ++E  G+ ID 
Sbjct: 499 ELTRATEYSGEDSDMTLDVHRVLWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDS 558

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL + SA++++ +++LE+  + L+G+ FNL SPKQ+G+ILF KL  P+  KT +G   T
Sbjct: 559 ALLARQSADLAQRMVALEQEAHALAGQPFNLGSPKQIGEILFNKLGIPAKKKTASGAPST 618

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   D P+   +LE R L+K+K TY D LP  +N  T RVHT Y+ A  +TGR
Sbjct: 619 DEEVLAELAA-DYPLPAKLLEHRSLAKLKGTYTDKLPLMVNAATGRVHTNYAQAVAVTGR 677

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           LAS +PNLQNIPI+T  G+++R AFI+PP   ++SADYSQIELRI+AHI++   L + F 
Sbjct: 678 LASNDPNLQNIPIRTPEGRRVREAFIAPPGHVILSADYSQIELRIMAHISEDPGLLKAFA 737

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             LD+HR  A+E+F V + +VS + RR+AK INF +IYG+  F LA+ L I +  A DYI
Sbjct: 738 EGLDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMGAFGLASNLGIEQKAAKDYI 797

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF RF G+  Y+++T+   ++ GYVET+FGRRI+  EIN      R   ER AINAP+
Sbjct: 798 DRYFARFAGVKRYMDETRARAKELGYVETLFGRRIYLPEINGGNGPRRTGAERQAINAPM 857

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ + AMI+V  +L+  + AT M++Q+HDELVFEVPE E+  A   +   M    
Sbjct: 858 QGTAADLIKLAMIAVQAALDAQQRATCMVMQVHDELVFEVPEAELDWARTAVPELMAGVA 917

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L+VPL   + V  NW   +
Sbjct: 918 ----ELKVPLLAEVGVGANWDLAH 937


>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
 gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
          Length = 930

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/986 (34%), Positives = 521/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M   + L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MATIHTLLLVDGSSYLYRAYHAMAQLT-APDGAPTGAMYGVLNMLRRL----RADYVHDY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 56  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++ 
Sbjct: 116 IGTLAKMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+    E  
Sbjct: 176 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKG-KVGENLQAALEQL 234

Query: 241 RLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +    +  LE L        +L    K   F   +           
Sbjct: 235 PLSYNLVTIKTDVDLHTELSDDLESLRRTSPKWSQLAVDFKRWGFRTWLK---------- 284

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E           F S +         +T  +   E+  
Sbjct: 285 --------------------EAESRMHEAADGDLFGSDTIGEQAALDMETSSERLHEKA- 323

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL   G       T ++DA ++  + I+I+    
Sbjct: 324 ----VAPEKLDYQAVTTEAQFAALLDKLSRAGKIGIDTETTSLDAMNAALVGISIAFQAG 379

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 380 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             Y I++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 430 ANYDIALNGIAGDSMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQISFAD 488

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+  ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 489 VAIGQATEYTAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 547

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 548 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 607

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D  + K IL+ R L+K+KSTY D LP  I  +  RVHT Y+ A  +T
Sbjct: 608 STNEAVLEQL-APDYALPKIILQNRSLAKLKSTYTDKLPEMIFPKDGRVHTTYAQAVAIT 666

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 667 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 726

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A  
Sbjct: 727 FQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKT 786

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 787 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINA 846

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V + L+   L TK+++Q+HDELV EVP+ E+    + +   M K
Sbjct: 847 PMQGTASDLIKRAMIDVSRWLDLDGLKTKLIMQVHDELVLEVPKAELDLVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 907 VDEGM--LNVPLVAEVGVGMNWEEAH 930


>gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/988 (34%), Positives = 522/988 (52%), Gaps = 65/988 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M + + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 7   MNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 62

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD P  TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 63  HIGVAFDPPGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIKAYRIPILEVAGYEADD 122

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI- 174
           +I T    A  +G    +++ DKD  QLV+    +Y         E + +E V  K+ I 
Sbjct: 123 VIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKFDIQ 182

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  + 
Sbjct: 183 SPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVE 241

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E    S+ L  ++ DVPI + +  L+ E  +   L    + LEF  L+ R+      
Sbjct: 242 TNREMIIFSKFLATIKVDVPIRLDMNSLVREQADEDTLRKIFEELEFRTLMERIFKKESS 301

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            A+ I   + +      +G   E                          E TP     E+
Sbjct: 302 PASPIAGTLFNQENGPVQGNLFE--------------------------EFTPDHTNEEK 335

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
              L      +  Y  I   +   + ++KL T    +    T   D   ++ + ++ S  
Sbjct: 336 KSNLESLNSLSYDYQLIDTEEKRNEIIKKLLTSEILALDTETTGTDPMDAELVGMSFSIT 395

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +         +  ++ +     +          +I+   +  F+NE  LK+G NIKYD L
Sbjct: 396 EN--------QAFYVPVPAEREE--------AIKIVREFEPVFKNEKSLKVGQNIKYDML 439

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIP 529
           VL  YGI +RG   D M+  YVL      H++  +A+ +L Y     +E++    K    
Sbjct: 440 VLQNYGIEVRGKLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGPKGKGQKN 498

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +S  +V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G++
Sbjct: 499 MRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVNIESNGVR 558

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D + LKQ S   +  L S+E+ IY L+  +FN++SPKQ+G+ILF KLK      KTKTG
Sbjct: 559 LDTEALKQSSEHFTTRLQSIEKEIYTLAEGEFNIASPKQVGEILFDKLKIVEKAKKTKTG 618

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN +T R+HT ++   T
Sbjct: 619 QYVTSEEVLESLR-NKHDIIGKILEYRGLKKLLSTYIDALPQLINPKTGRIHTSFNQTVT 677

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   + 
Sbjct: 678 ATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMI 737

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F +  DIH   AA+I+ V+I++V+  MRR AKT NF IIYGIS F LA ++ + R EA
Sbjct: 738 DAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 797

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF  +P +  Y++K+    R++GYVETIF R+    +INS  + +R   ER AI
Sbjct: 798 KELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 857

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AM  +++  +   L  KM+LQ+HDEL F VP +E     Q+++  M
Sbjct: 858 NAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVEQVVIEEM 917

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           EKA      + VPLK +     NW E +
Sbjct: 918 EKA----YRMHVPLKADCGWGTNWLEAH 941


>gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 964

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/988 (34%), Positives = 522/988 (52%), Gaps = 65/988 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M + + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 30  MNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 85

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 86  HIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEADD 145

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI- 174
           +I T    A K+G    +++ DKD  QLV+    +Y         E + IE V  K+ I 
Sbjct: 146 VIGTLATEAGKQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGIEQVKAKFDIQ 205

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  + 
Sbjct: 206 SPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVE 264

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E    S+ L  ++ DVPI + +  L+ E  +   L    + LEF  L+ R+      
Sbjct: 265 TNREMIIFSKFLATIKIDVPIQLDMNSLVREQADEEALRKIFEELEFRTLMERIFKKESS 324

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            + +    +     +  +G   E                          E TP     E+
Sbjct: 325 PSPSPAGPLFSQENSPIQGNLFE--------------------------EFTPDTPTEEK 358

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
              L         Y  I      Q+ ++KL T    +    T   D   ++ + ++ S  
Sbjct: 359 KSNLESLNSLTYDYQLIDTESKRQEIIKKLLTSEILALDTETTGTDPMDAELVGMSFSIA 418

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +         +  +I +     +          +I+   +  F+N+  LK+G NIKYD L
Sbjct: 419 EN--------QAFYIPVPAGREE--------ATKIVREFESVFKNDKSLKVGQNIKYDML 462

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS-RKSSIP 529
           VL  YGI +RG   D M+  YVL      H++  +A+ +L Y     +E++    K    
Sbjct: 463 VLQNYGIEIRGRLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGPRGKGQKN 521

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +S   V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G++
Sbjct: 522 MRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVNIESNGVR 581

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D + LKQ S   +  L S+E+ IY+L+GE+FN++SPKQ+G+ILF KLK      KTKTG
Sbjct: 582 LDTEALKQSSEHFTTRLQSIEKEIYNLAGEEFNIASPKQVGEILFDKLKIVEKAKKTKTG 641

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + LE +    + +I  ILE+R L K+ STY D+LP  IN RT R+HT ++   T
Sbjct: 642 QYVTSEEVLESLR-NKHDVIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQTVT 700

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH++K   + 
Sbjct: 701 ATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMI 760

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F +  DIH   AA+I+ V+I++V+  MRR AKT NF IIYGIS F LA ++ + R EA
Sbjct: 761 DAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 820

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF  +P +  Y++K+    R++GYVETIF R+    +INS  + +R   ER AI
Sbjct: 821 KELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 880

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AM  +++  +   L  KM+LQ+HDEL F VP +E     Q+++  M
Sbjct: 881 NAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKEIVEQVVIEEM 940

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           EKA      + VPLK +     NW + +
Sbjct: 941 EKA----YRMHVPLKADCGWGTNWLQAH 964


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/988 (34%), Positives = 522/988 (52%), Gaps = 65/988 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M + + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 7   MNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 62

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD P  TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 63  HIGVAFDPPGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIKAYRIPILEVAGYEADD 122

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI- 174
           +I T    A  +G    +++ DKD  QLV+    +Y         E + +E V  K+ I 
Sbjct: 123 VIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKFDIQ 182

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  + 
Sbjct: 183 SPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVE 241

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E    S+ L  ++ DVPI + +  L+ E  +   L    + LEF  L+ R+      
Sbjct: 242 TNREMIIFSKFLATIKVDVPIRLDMNSLVREQADEDTLRKIFEELEFRTLMERIFKKESS 301

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            A+ I   + +      +G   E                          E TP     E+
Sbjct: 302 PASPIAGTLFNQENGPVQGNLFE--------------------------EFTPDYTNEEK 335

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
              L      +  Y  I   +   + ++KL T    +    T   D   ++ + ++ S  
Sbjct: 336 KSNLESLNSLSYDYQLIDTEEKRNEIIKKLLTSEILALDTETTGTDPMDAELVGMSFSIT 395

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +         +  ++ +     +          +I+   +  F+NE  LK+G NIKYD L
Sbjct: 396 EN--------QAFYVPVPAERKE--------AIKIVREFEPVFKNEKSLKVGQNIKYDML 439

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIP 529
           VL  YGI +RG   D M+  YVL      H++  +A+ +L Y     +E++    K    
Sbjct: 440 VLQNYGIEVRGKLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGPKGKGQKN 498

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +S  +V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G++
Sbjct: 499 MRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVNIESNGVR 558

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D + LKQ S   +  L S+E+ IY L+  +FN++SPKQ+G+ILF KLK      KTKTG
Sbjct: 559 LDTEALKQSSEHFTTRLQSIEKEIYTLAEGEFNIASPKQVGEILFDKLKIVEKAKKTKTG 618

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + LE +    + II  ILE+R L K+ STY D+LP  IN +T R+HT ++   T
Sbjct: 619 QYVTSEEVLESLR-NKHDIIGKILEYRGLKKLLSTYIDALPQLINPKTGRIHTSFNQTVT 677

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   + 
Sbjct: 678 ATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMI 737

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F +  DIH   AA+I+ V+I++V+  MRR AKT NF IIYGIS F LA ++ + R EA
Sbjct: 738 DAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 797

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF  +P +  Y++K+    R++GYVETIF R+    +INS  + +R   ER AI
Sbjct: 798 KELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 857

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AM  +++  +   L  KM+LQ+HDEL F VP +E     Q+++  M
Sbjct: 858 NAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVEQVVIEEM 917

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           EKA      + VPLK +     NW E +
Sbjct: 918 EKA----YRMHVPLKADCGWGTNWLEAH 941


>gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3]
 gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
          Length = 916

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/990 (34%), Positives = 516/990 (52%), Gaps = 88/990 (8%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     
Sbjct: 1   MPKIADNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYK----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           S  AV+FD    TFRN++Y +YKA RP +P+ L  Q+  +    +A G+P + I G EAD
Sbjct: 56  SQMAVVFDAKGKTFRNDMYSEYKAQRPPMPDDLRGQIAPLHQIIKALGLPLVCIPGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A KEG AV I + DKD+ QLV     L +T+    +    V +K+G+ PE 
Sbjct: 116 DVIGTIATQASKEGRAVLISTGDKDMAQLVDDNVTLINTMTNTVMGPAEVTEKFGVGPEL 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
           ++ L AL GD  DNIPG+PG+G KTA  +L   G ++NIL    ++ +      K     
Sbjct: 176 IIDLLALQGDKADNIPGLPGVGEKTALAMLLGVGGVDNILAAPEKMPELGFRGSKTMPAK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           I E+ +  +LS +L  ++ DV +      + +E  N   L+     +EF + +  V    
Sbjct: 236 IAEHGDMLKLSYELATIKLDVELEQDWRTMDIEPANKDELVKCYGEMEFKRWLAEVL--- 292

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                            +NK  A   E + +  +K                         
Sbjct: 293 -----------------DNKSTATADEDNDEAVVKQD----------------------- 312

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                          Y  I++ + +  W+  L      +    T +++   ++ + I+ +
Sbjct: 313 -----------IEAKYDTILSVEQLDSWIATLSKADLIAIDTETTSLNYMEAELVGISFA 361

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               K      +   ++D           +      +   L    ENE   K+G N+KYD
Sbjct: 362 VEAGK-AAYLPLSHDYVDAP---------EQLDKALVFEKLTPLLENEAIKKVGQNLKYD 411

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
             +    GI ++G   D ML SYV +S  S H++  +A K+L +     +EI       +
Sbjct: 412 ISIFANAGIKLKGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQL 471

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             ++I       +A E++++ L+L   L P+L    +L  V+  ++ P+ID++S +E  G
Sbjct: 472 TFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKLPQLASVFTDIELPLIDILSTIERQG 531

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  LL Q S E+++ +  L+   ++++G+ FNL+SPKQL ++ F KL +P   KT  
Sbjct: 532 VLIDSMLLGQQSEELARKIDDLQTKAHEIAGQPFNLASPKQLQELFFEKLGYPIIKKTPK 591

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G    TA+++      D P+ K ILE R L+K+KSTY D LP  +N ++ RVHT Y  A+
Sbjct: 592 GAPS-TAEEVLVELALDYPLPKIILEHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQAN 650

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S EPNLQNIPI+T+ G++IR AFI+P  +K+++ADYSQIELRI+AH+++   L
Sbjct: 651 AATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGRKILAADYSQIELRIMAHLSQDKGL 710

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH+  AAE+F V+  +V+   RR AK +NF +IYG+S F LA QL IPR+E
Sbjct: 711 LTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRAE 770

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+  Y+E+T+      GYV T+FGRR++   I    +  R   ERAA
Sbjct: 771 AQRYIDTYFKRYPGVLNYMEETRAIATDLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAA 830

Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMI+V K +E +      M++Q+HDELVFEV  ++  +    I  
Sbjct: 831 INAPMQGTAADIIKKAMINVAKWIETETNGEITMIMQVHDELVFEVDADKADSLQVKICE 890

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M  A      L V L     + +NW++ +
Sbjct: 891 LMAAAA----TLDVELLAEAGIGDNWEQAH 916


>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
 gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
          Length = 938

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/993 (34%), Positives = 519/993 (52%), Gaps = 72/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A        DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNKPTLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGAMYGVLNMLRRL----RADYVHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++ 
Sbjct: 117 IGTLAKMASEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A  +K  K  EN+    E  
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVKG-KVGENLQAALEQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHTELSDGLESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E        T  F S       I  +           Q
Sbjct: 286 --------------------EAESRMHEAQNTDLFGS-----EHIGEQAALAMEIQPEKQ 320

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL           T ++DA ++  + I+I+    
Sbjct: 321 PELAPVPEKLDYQAVTTEAQFAALLDKLAQADKIGIDTETTSLDAMNAALVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             Y I++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYDIALNGIAGDSMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQISFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIVQATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLSIDNISAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I++  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQI 943
           P+QG+A+D+ +RAMI V   L + +       L +K+++Q+HDELV EVPE E+    + 
Sbjct: 848 PMQGTASDLIKRAMIDVSCWLSECEASPWDDLLQSKLIMQVHDELVLEVPEAELDLVKEK 907

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M K       L VPL   + V  NW+E +
Sbjct: 908 LPQIMAKVDEGM--LNVPLVAEVGVGMNWEEAH 938


>gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
 gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
 gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
 gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
          Length = 929

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/986 (34%), Positives = 522/986 (52%), Gaps = 67/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMAQLT-APDGAPTGAMYGVLNMLRRL----RADYVHDY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 56  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLIGWPVLVIPQVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 116 IGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+    +  
Sbjct: 176 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKG-KVGENLRAALQRL 234

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 235 PLSYDLVTIKTDVDLHTELSDGIESLRRTAPKWAQLVVDFKRWGFRTWLK---------- 284

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E           F S S       + + P +   E   
Sbjct: 285 --------------------EAESRMHEAADGDLFGSDSIGEQAALNAEVPSEKQPELAP 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +     +   + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 TP-----EKLDYQAVTTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAG 379

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         I+I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 380 E--------AIYIPVGHSLT--AAPEQIDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 430 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQISFAD 488

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 489 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 547

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y ++G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 548 AELSRQSAELGAELMKLEQEAYAVAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 607

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 608 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 666

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 667 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLITA 726

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A  
Sbjct: 727 FQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKT 786

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 787 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 846

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 847 PMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 905

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 906 VDGGL--LDVPLVAEVGVGENWEEAH 929


>gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
 gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
 gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
          Length = 923

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/977 (35%), Positives = 546/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLKG-KLSQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +    
Sbjct: 236 QLASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ E+    TI+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+  D KD     +
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF-DAKDAYYVPL 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         ++  +    +++L+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 385 AHNY---------ENAPQQLDREQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFEV        S+ I   M+      + + 
Sbjct: 853 IKLAMIEVDKILPKDQ--AKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGKNWDDAH 923


>gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S]
 gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S]
          Length = 928

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/979 (39%), Positives = 564/979 (57%), Gaps = 59/979 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +NHL+LVDGS +I+RA++  P L+ +H G PV A+ G+  MLWKL     K    +H AV
Sbjct: 3   QNHLYLVDGSGYIFRAYHQLPPLTNRH-GQPVGAVYGYTTMLWKLADELGKAEGPTHLAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + D  + TFRN++Y  YKANRP  PE L+PQ P++R AT+AF +P IE  GFEADDIIA+
Sbjct: 62  VLDKGSHTFRNDMYDAYKANRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIAS 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           YT  A  +G+ VTI+S+DKDLMQL+ P   +YDT+K E+   ++V+ K+G+ PE++  + 
Sbjct: 122 YTKAAVAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMTKFGVRPEQLGDVL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS+DN+PG+PGIG KTAA L+ EYG LE  L  A R+K+ K +EN++E+A+ ARLS
Sbjct: 182 ALMGDSVDNVPGVPGIGPKTAAKLITEYGGLEAALEAAPRMKKSKMQENLIEHADMARLS 241

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV L   + +  PL+ L L+      L +FL+   F  L+ R        A       
Sbjct: 242 RRLVALHDGMDLPEPLDDLTLKGIPLEPLQAFLEHHGFKSLLARAGAPAAAVAVATAAAA 301

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           +   T     +  E                                          + PI
Sbjct: 302 VTEATAPAAPVLEE------------------------------------------EPPI 319

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +   Y  +V  + + +W+  +   G  +    TD +D      + ++++           
Sbjct: 320 DRSLYETVVTEEALDRWIAAVHAEGLVAVDTETDMLDCVSCALVGVSLAVGPN-AACYIP 378

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           V     D+                 +L+ LK   E++  LKIG N+KYD  VL R+GI +
Sbjct: 379 VGHGGKDMFA-----EKPDQLPLPLVLAKLKPLLEDDSVLKIGQNLKYDITVLRRHGIEI 433

Query: 484 RGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQV 538
             ++D ++MS+ LD+G+S   H +   A+  L++     K++  + +S I   ++   + 
Sbjct: 434 APYDDTIVMSFDLDAGQSLAGHGMDEAARVHLNHVCISFKDVCGTGRSQISFAEVPLDKA 493

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            E+A E+++V L+LW L + ++  E    VYE +D+P++ V+++ME  GI++D++ L ++
Sbjct: 494 TEYAAEDADVTLRLWRLFKSRIANEGATRVYELVDRPLVGVIAKMEHEGIKVDREALSRL 553

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SAE +  + +LE  I+ L+G+ F + S +QLG ILF K+ +  G K K+G + T    LE
Sbjct: 554 SAEFTAGIAALEGEIHALAGQPFAIGSTQQLGAILFDKMGYKGGRKGKSGAYSTDVTILE 613

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q+      I   +L+WRQLSK+KSTY D+L   INK + RVHT YSL+   TGRL+S +P
Sbjct: 614 QLKAQGAEIAGKVLDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLSGAQTGRLSSTDP 673

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T++G++IR AF++ P   +++ADYSQIELR+ AH+A +  L + F N  DIH
Sbjct: 674 NLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIH 733

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++FG    +V+   R  AKTINF+I+YGIS + LA +L I   EA D I RY+ R
Sbjct: 734 AATAQQLFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQDMISRYYER 789

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPGI  YI  T    R  GY ET+FGR+  +  I +P    R   ERAAINAPIQG++AD
Sbjct: 790 FPGISLYITDTIEKARSRGYTETLFGRKTWFPRIKAPVQHERQGAERAAINAPIQGTSAD 849

Query: 899 ITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I +RAM  +  +L    L   KMLLQ+HDELVFE+PE ++  A  +I   ME A  P + 
Sbjct: 850 IIKRAMARMGPALAAEGLHRVKMLLQVHDELVFELPEGDVEHAGAVIRRVMEGAAEPIVK 909

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V I   ++W   +
Sbjct: 910 LSVPLGVEIGHGSSWGAAH 928


>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 923

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/977 (35%), Positives = 546/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLKG-KLSQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +    
Sbjct: 236 QLASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ E+    TI+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+  D KD     +
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF-DAKDAYYIPL 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         ++  +    +++L+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 385 AHNY---------ENAPQQLNREQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFEV        S+ I   M+      + + 
Sbjct: 853 IKLAMIEVDKILPKDQ--AKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGKNWDDAH 923


>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
 gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
          Length = 923

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/977 (35%), Positives = 545/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A KEG  V I + DKD+ QLV+    L D+ K+  +D E V +K+G+ P +++    
Sbjct: 117 AKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTESVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLKG-KLSQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + + ++ +    
Sbjct: 236 QLASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNNSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ E+    TI+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+  D KD     +
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF-DAKDAYYIPL 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         ++  +    +++L+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 385 AHNY---------ENAPQQLNREQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFEV        S+ I   M+      + + 
Sbjct: 853 IKLAMIEVDKILPKDQ--AKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGKNWDDAH 923


>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
 gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
          Length = 930

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/986 (34%), Positives = 519/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRA++A        +G P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNKPTLLLVDGSSYLYRAYHAMGQNLSAPNGAPTGAMYGVLNMLRRL----RADYVHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++ 
Sbjct: 117 IGTLAKMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A  +K  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHTELSDGLESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E        T  F S         + +T  +   E   
Sbjct: 286 --------------------EAESRMHEAQNTDLFGSEHIGEQAALAMETQPEKQPELAP 325

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I         + K+    +      T ++DA ++  + I+I+    
Sbjct: 326 AP-----EKLDYQAITTEAQFAALLDKMSQADTIGIDTETTSLDAMNAALVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             Y I++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYDIALNGIAGDSMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQISFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +IL  K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILVDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSIIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PGI EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGIAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V + L  + L +K+++Q+HDELV EVPE E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMIDVSRWL-SYDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 907 VDEGM--LNVPLVAEVGVGMNWEEAH 930


>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
 gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
          Length = 913

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/983 (36%), Positives = 535/983 (54%), Gaps = 86/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RSPDGNPTGALYGMINMLRRM----RKEVTAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ YPDYKANRP +P+ L  Q+  + +A +A G P + I G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  AEK G  V + + DKDL QLVS    L +T+  E +D   V+ K+G+PPE++V  
Sbjct: 123 TLSTQAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNETLDRAGVLAKFGVPPERIVDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L ++ +L+ I+ +A  IK     +N+    +   +
Sbjct: 183 LSLIGDTVDNVPGVEKCGPKTAIKWLTQFDSLDGIVAHADEIKGA-VGDNLRRALDFLPM 241

Query: 243 SRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           ++KLV +  +  +T  +    E L     +   L        F                 
Sbjct: 242 AKKLVTVERNCDMTDHIVSIEESLQSRPESREELREVFTRHGF----------------- 284

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                        K    E EI              +D      ++  P           
Sbjct: 285 -------------KTWLREVEI--------------ADAVEGPETDVPPALSVD------ 311

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +   Y  +   +    W++K+ T    SF   T ++D   ++ + +++S    + 
Sbjct: 312 -----HERHYDTVQTWEQFDGWLEKINTAELTSFDTETTSLDPMTAQIVGLSLSVEAGR- 365

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L+ H   D+        E+L+ LK + E+    K+G ++KYD+ VL  
Sbjct: 366 -------AAYVPLA-HRGPDAPV-QLPRDEVLARLKPWLESAEHKKVGQHLKYDEQVLAN 416

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI MRG   D +L SYV++S R+ HD+ S+A + L       +E+       I  D+++
Sbjct: 417 YGIEMRGIEHDTLLQSYVVESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVA 475

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L   L P++  EK L +VY  ++ P   V+ +ME TG+ ID +
Sbjct: 476 LDKAAEYAAEDADITLRLHQALYPQVTAEKTLEYVYRAIELPTSRVLRKMERTGVLIDAE 535

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+  S+EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 536 KLRLQSSEIATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTD 595

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 596 EEVLQKL-AEDYPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRL 654

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F  
Sbjct: 655 ASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQ 714

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIF V   +VS   RR AK INF +IYG+S F LA  L I R  A  YI 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLAANLGITRDAAKLYID 774

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 775 RYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V   +E+ K+ T+M++Q+HDEL+ EVP+ E++   + +   M     
Sbjct: 835 GTAADLIKLSMIAVQNWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVA- 893

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
              +L+VPL   +    NW+E +
Sbjct: 894 ---DLKVPLVAEVGAGLNWEEAH 913


>gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442]
 gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442]
          Length = 930

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/986 (34%), Positives = 517/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----IAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPTLKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             Y I++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYDIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMIDVRNWLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 907 VDGGL--LDVPLVAEVGVGENWEEAH 930


>gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945]
          Length = 930

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/986 (34%), Positives = 517/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK    N    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP+ I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPDMISPQDNRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +PP   ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VSP+ RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++ K      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRAKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMIDVRNWLSD-GIDSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 907 VDGGL--LDVPLVAEVGVGENWEEAH 930


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/987 (33%), Positives = 526/987 (53%), Gaps = 74/987 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            +   LFL+D  + IYRA+YA     R    G   +AI GF N L  +L+        +H
Sbjct: 30  TRMEKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAIMGFVNTLEDVLKKEN----PTH 85

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD+
Sbjct: 86  IGIAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEADDV 145

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP- 175
           I T    A K G    +++ DKD  QLVS    +Y         E + +  +  K+ I  
Sbjct: 146 IGTLATEAGKRGITTYMMTPDKDYGQLVSENVFMYRPKYGDKEFEVMGVNEIKAKFDIES 205

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GD+ DNIPG PG+G KTA  L+ ++G++EN+L N  ++K    +  +  
Sbjct: 206 PSQVIDMLGLMGDTADNIPGCPGVGEKTAQKLIAQFGSIENLLANTDQLKGA-IKTKVEN 264

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++TDVPI++ +E L  E  +   L    + LEF  L++R+  T    
Sbjct: 265 NREQITFSKFLATIKTDVPISLDMEALKREQPDEEELRKIFEELEFRTLLDRILKTEKKT 324

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           AA   PV  D+                        F   S + +       P+   L RL
Sbjct: 325 AAPSAPVQSDL------------------------FGFFSGENT-----DEPKNSNLTRL 355

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + L      +  Y  + + + I  ++Q + T    S    T   D   ++ + ++ S  +
Sbjct: 356 EDL------DFDYQLLDSEEKIDDFLQIIVTKDFFSLDTETTGTDPITAELVGMSFSFAE 409

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  ++ +  +  +           I+  LK   ENE  LKIG NIKYD LV
Sbjct: 410 N--------QAFYVPVPANREEALA--------IVKKLKPIIENEKTLKIGQNIKYDMLV 453

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG+ +RG   D M+  YVL      H +  +A+ +L Y     +E++    K+   +
Sbjct: 454 LGNYGVEVRGPMFDTMIAHYVLQPELH-HGMDYLAEVYLKYETIKIEELIGPKGKNQKNM 512

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +S + V ++A E+++V L+L  +L  +LI   +  +++ ++ P++ V++ ME  G++I
Sbjct: 513 RDLSPTSVYKYACEDADVTLKLKKVLEKELIENNVNELFQTIEMPLVPVLAYMERNGVRI 572

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LK+ S   +  +  LEE ++ L+G +FN++SPKQ+G++LF +LK      KTKTGQ
Sbjct: 573 DTEALKETSQHFTARMKQLEEEVHQLAGMEFNIASPKQVGEVLFDRLKITDKAKKTKTGQ 632

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +  G + I+  ILE R L K+  TY D+LP  IN +T  +HT ++   T 
Sbjct: 633 YVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINPKTGHIHTSFNQTVTA 691

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IRRAFI     +  SADYSQIELRI+AH++    + +
Sbjct: 692 TGRLSSSNPNLQNIPIRNEDGKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIE 751

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   DIH   AA+I+   +E V+ + R  AKT NF IIYGIS F LA +L I R EA 
Sbjct: 752 AFQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVFGLAERLNIERKEAK 811

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +P + EY++++    ++ GY+ETIF R+ +  +INS  + +R   ER AIN
Sbjct: 812 ELIDGYFENYPHVKEYMDQSIRLAQEKGYIETIFKRKRYLPDINSRNAVVRGYAERNAIN 871

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AMI ++K   +  + +KM+LQ+HDEL F V  EE      I++  ME
Sbjct: 872 APIQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDELNFSVVPEEKEKVQHIVISEME 931

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      ++VPL+ +     NW E +
Sbjct: 932 AA----YKMKVPLQADCDWGKNWLEAH 954


>gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii SDF]
 gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii]
          Length = 923

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/977 (35%), Positives = 546/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A KEG  V I + DKD+ QLV+    L D+ K+  +  + V +K+G+ P +++    
Sbjct: 117 AKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLGTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLKG-KLSQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +    
Sbjct: 236 QLASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ E+    TI+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+  D KD     +
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF-DAKDAYYVPL 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         ++  +    +++L+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 385 AHNY---------ENAPQQLDREQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFEV        S+ I   M+      + + 
Sbjct: 853 IKLAMIEVDKILPKDQ--AKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +   NNW + +
Sbjct: 907 VPLVVEVGQGNNWDDAH 923


>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
 gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
          Length = 940

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/983 (34%), Positives = 536/983 (54%), Gaps = 56/983 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    G+  +AI GF N L  +L+        +H AV 
Sbjct: 2   KLFLIDAYALIYRSYYAFIKNPRINSKGMNTSAIFGFINSLEDVLKREN----PTHIAVG 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y  YKA R + PE +   +P ++   +A+ IP +E+  +EADD+I T 
Sbjct: 58  FDPKGPTFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPP-EKMV 180
              AEKEGF V +++ DKD  QLVS    +Y        E + +  V+ K+G+   ++++
Sbjct: 118 AKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGDYEIMGVPEVLDKYGLTSVDQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L GDS DNIPG PG+G KTA  LL E+G +EN+L N  ++K    ++ ++E  E  
Sbjct: 178 DLLGLMGDSSDNIPGCPGVGEKTAQKLLAEFGTIENLLENTDKLKGS-LQKKVMENMEQI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R S+ L  ++TDVPI       I E  N  RL+     LEF   INR++   +      +
Sbjct: 237 RFSKFLATIKTDVPIRFDAAKCIREKMNEERLVEIYTELEFRTFINRMSGEPEKVKTESK 296

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                      K  A          I+ S F   + + + +     P+   L  L+    
Sbjct: 297 TAPAPAKADTRKKAAPA------GPIQGSLFEEFATEPTAV-----PKYSTLANLKSTPH 345

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  +   +   +  + L      +F   TD +D   +  + ++ +  + +   
Sbjct: 346 ------TYYLVDTEEKRIELGRFLNEQDFFAFDTETDGIDPLKAGLVGMSFAVKENE--- 396

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +     +          +IL++     +N   LKIG NIK+D LV+ +YG
Sbjct: 397 -----AWYVPVPAAREE--------ADKILAHFSPALQNPKSLKIGQNIKFDILVVRKYG 443

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK-SSIPIDKISD 535
           I + G   D M+  Y+L+     H +  +A+ +L Y     +E++  R+   + +  +  
Sbjct: 444 IRIAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYKTVRIEELIGPRERKQLTMRDVPV 502

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            QV E+A E++++ L+L     P L  E L  ++  ++ P+I V+++ME TG+ +D   L
Sbjct: 503 VQVAEYAAEDADITLKLKNYFTPCLEKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTVAL 562

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTA 654
           KQ S E++  L  LE+ IY+L+G KFN++S +Q+G++LF  LK      KTKTG + T+ 
Sbjct: 563 KQSSEELTTALKKLEKEIYELAGMKFNINSARQVGEVLFDHLKIEEKARKTKTGSYSTSE 622

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE++    +P++  +LE+R L K+ STY D+LP  IN  T ++HT Y+ A T TGRL+
Sbjct: 623 EILEKMRS-KHPVVGKLLEYRGLKKLLSTYIDALPELINPETGKIHTSYNQAVTSTGRLS 681

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQNIP++ +LG++IR+AF +        SADYSQIELRI+AH+++   + + F +
Sbjct: 682 STNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMIEAFRS 741

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+G+ +E+V+  MRR AKT NF IIYGIS F LA +L IPR+E+ + I+
Sbjct: 742 GADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLSIPRAESKELIE 801

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P I  Y++++    ++ GYVETI+ R+    +INS  + +R   ER AINAPIQ
Sbjct: 802 GYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFLPDINSHNAIVRGYAERNAINAPIQ 861

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ +    E   L +KM+LQ+HDEL F V ++E+    QI++  ME A  
Sbjct: 862 GSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDELEKVKQIVLDEMENA-- 919

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
             I L+VPL  +     NW E +
Sbjct: 920 --IKLQVPLIADCGEGVNWLEAH 940


>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 958

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/986 (35%), Positives = 524/986 (53%), Gaps = 67/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L LVDGSS++YRA++A   LS   DG P  A+ G  NML +L    R + +  +
Sbjct: 30  MSK-PTLLLVDGSSYLYRAYHAMAQLS-APDGAPTGALYGVLNMLRRL----RADYVHDY 83

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 84  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLMGWPVLVIPQVEADDV 143

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++ 
Sbjct: 144 IGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIR 203

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+       
Sbjct: 204 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKG-KVGENLQAALPQL 262

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L    K   F   +           
Sbjct: 263 LLSYDLVTIKTDVDLHTELSDGLESLRRTSPKWSQLAVDFKRWGFRTWLK---------- 312

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E           F S +         +T  +   E+  
Sbjct: 313 --------------------EAESRMHEAADGDLFGSDTIGEQAALDMETSSERLPEKA- 351

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 352 ----VAPEKLDYQAVTTEAQFAALLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAG 407

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 408 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 457

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 458 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 516

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 517 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 575

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 576 AELARQSAELGAELMKLEQQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 635

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 636 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 694

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 695 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 754

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A  
Sbjct: 755 FQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKT 814

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 815 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 874

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V + L D  L +K+++Q+HDELV EVPE E+    + +   MEK
Sbjct: 875 PMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQIMEK 934

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 935 VDEGM--LNVPLVAEVGVGMNWEEAH 958


>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
 gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
          Length = 910

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/989 (35%), Positives = 536/989 (54%), Gaps = 92/989 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M +   L LVDGSS++YRAF+A+     R  +G P  AI    NML  LL    K+   S
Sbjct: 1   MTQTPPLILVDGSSYLYRAFFASQQADLRTSNGEPTGAIRVVTNMLRSLL----KQYPDS 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             AV+FD    +FRN++Y +YK++RP +P+ L  Q+  +     A G+P + I G EADD
Sbjct: 57  VVAVVFDAKGKSFRNDLYAEYKSHRPPMPDDLRSQIEPIHQIIGAMGLPLLVIDGVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T    A +      I + DKD+ QLVS    L DT+K++  D + VI K+G+PPE +
Sbjct: 117 VIGTLARQATESQIDTLISTGDKDMAQLVSEHVTLMDTMKDQLTDRQGVIDKFGVPPELI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENI 233
           V   AL GDS DNIPG+ G+G KTA  +LQ  G+++ I  +  R+        K      
Sbjct: 177 VDYLALMGDSSDNIPGMAGVGDKTAVAVLQGVGSIDTIAAHPERVAELSFRGAKTFAAKF 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E     RLS++L  ++TDV + + L                   L   +L   V     
Sbjct: 237 KEQEAMVRLSQQLATIKTDVELPVSL-----------------AELRRHELQKDVL---- 275

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                               +A+  + +    ++  + +S +D      S+ T       
Sbjct: 276 --------------------LALYRQFEFKNLVQELESASEADAEIVTPSDVTA------ 309

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  I+   D+ +W +KL+     SF   T+++D   ++ + ++ + 
Sbjct: 310 -------------HYDTILTDADLTRWFEKLQQAELFSFDTETNSLDYIQAQVVGLSFAV 356

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                      +  ++ L+         +    ++ L+ LK   E+   LK+G ++K+D+
Sbjct: 357 APG--------DAAYLPLAHDYL--GAPEQLDREQTLAKLKPLLEDPTRLKVGQHLKFDR 406

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIP 529
            VL  +GI ++G   D ML SYVL+S  S H++  +A+K+L+YT    +++       + 
Sbjct: 407 NVLRNHGIHLQGIAFDTMLESYVLNSTASRHNMDDLAKKYLNYTTQTFEDVAGKGVKQLT 466

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588
            +++   +   +A E++++ L+L   L P++  E  L  +   ++ P+ +V+S ME TG 
Sbjct: 467 FNQVELEKAAFYAAEDADITLRLHQTLWPQVEKEPALKSLLLEMELPLAEVLSDMERTGA 526

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID  LL+  S +I   L  LE   ++++G  FNL SPKQLG++LF KL+ P   KT  G
Sbjct: 527 LIDPFLLQNQSQQIEVRLAELESQAHEIAGGPFNLGSPKQLGEVLFEKLQLPVIKKTPKG 586

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
               TA+++ Q    D P+ K +LE R LSK+KSTY D LP  I   T RVHT Y  A T
Sbjct: 587 APS-TAEEVLQELAYDYPLPKLLLEHRSLSKLKSTYTDKLPLMIAPSTGRVHTSYHQAVT 645

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T+ G++IR+AF++    K+++ADYSQIELRI+AH+++   L 
Sbjct: 646 ATGRLSSSDPNLQNIPVRTEEGRRIRQAFVADHGYKIVAADYSQIELRIMAHLSEDDGLL 705

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F +  DIHR  AAEI  +  E V+ + RR+AK INF +IYG+S F LA QL IPR EA
Sbjct: 706 QAFAHGQDIHRATAAEIMNITPEAVTSEQRRNAKAINFGLIYGMSAFGLAKQLGIPRGEA 765

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             Y+ RYF R+PG+  Y+E+T+    Q GYVET+FGRR++  +I +    +R   ERAAI
Sbjct: 766 QRYMDRYFERYPGVLTYMERTREQAEQAGYVETLFGRRLYLPDIKAKNMGLRKAAERAAI 825

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAP+QG+AADI +RAMI +   ++     T +M++Q+HDELVFEV E+++     +I   
Sbjct: 826 NAPMQGTAADIIKRAMIKLADWIKTCDNGTIRMVMQVHDELVFEVREDKLDAYVPVIRQY 885

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M  A     +L+VPL V I V +NW + +
Sbjct: 886 MMDAA----SLKVPLDVGIGVGDNWDQAH 910


>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
          Length = 923

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/977 (35%), Positives = 546/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLKG-KLSQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  ++P+ +    L L D N   L +    LEF   +  +    + ++++ +    
Sbjct: 236 QLASIVCNLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ E+    TI+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+  D KD     +
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF-DAKDAYYVPL 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         ++  +    +++L+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 385 AHNY---------ENAPQQLDREQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFEV        S+ I   M+      + + 
Sbjct: 853 IKLAMIEVDKILPKDQ--AKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGKNWDDAH 923


>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
 gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
          Length = 923

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/977 (35%), Positives = 548/977 (56%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  EG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLKG-KISQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +  V 
Sbjct: 236 QLASIVCDLPLELDWHELKLIDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYKQQV- 294

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                      ++ E+    +I+T   +SL+ Q  ++ +                     
Sbjct: 295 -------SQAVVQNEVKPADSIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+   Q        
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAFDAQ-------- 377

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++ L+   + ++  +    ++IL+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 378 DAYYVPLAH--TYENAPQQLNREQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVATH 495

Query: 541 HAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L  +S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFEV +      S+ I + ME      + + 
Sbjct: 853 IKLAMIEVDKILPKDQ--AKLLLQVHDELVFEVDQNIADELSKQIANVMESV----LEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGLNWDDAH 923


>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
          Length = 931

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/989 (35%), Positives = 528/989 (53%), Gaps = 71/989 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M ++  L LVDGSS++YRAF+A P L          P  AI G  NML  L    +K+ +
Sbjct: 1   MTQDKTLVLVDGSSYLYRAFHAMPDLRAVPGDPSSSPTGAIRGMVNMLQAL----KKDVV 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           A +   +FD    TFR+ IYP+YKA+RP +PE L  Q+  +    +  G   + I G EA
Sbjct: 57  ADYAVCVFDASGPTFRDVIYPEYKAHRPAMPEELRAQIEPIHEVVRLLGWAVLAIPGVEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+I T  ++A ++G  V + S DKDL QLV+    + DT+  +K D+  V+ ++G+PP 
Sbjct: 117 DDVIGTLAHVAAQQGVQVVVSSGDKDLSQLVNERITIIDTMNGKKRDVAGVMAEFGVPPA 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            MV  QAL GD++DN+PG+P +G KTAA  L EYG+L+ ++  A  IK     EN+    
Sbjct: 177 LMVDFQALVGDAVDNVPGVPKVGPKTAAKWLSEYGSLDTLMARAGEIKG-VVGENLRATL 235

Query: 238 ETARLSRKLVMLRTDVPITIP------LEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                 R+LV ++TD  ++        L+ + +       L  F +   F  L   +   
Sbjct: 236 GWLPTGRQLVTIQTDCDLSAHVAGLPALDSIAVGAQQTDALAGFYEKYGFKSLARALQQA 295

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                A   P           G + +   D      TS  +  + Q S +          
Sbjct: 296 SPAPPATALP-----------GQSGDLFGDLFGDHNTSPVAEAAQQRSVV---------- 334

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                           Y  ++N  D  QW+ +L      +    T  +DA  ++ + ++ 
Sbjct: 335 ----------------YDTLLNWADFDQWLPRLLQADLVALDTETSALDAMRAQIVGLSF 378

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S    +          +I L  H   D+       +++L+ LK + E+    K+G +IKY
Sbjct: 379 SVQPGE--------AAYIPLR-HEGPDAPV-QLPLEQVLARLKPWLEDARHAKLGQHIKY 428

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSS 527
           D+ V   +GI +RG+  D ML SYVL+  +  H++AS+A++         +++       
Sbjct: 429 DRHVFANHGIEVRGYVHDTMLQSYVLEVHK-PHNLASLAERHTGRTGLNYEDLCGKGVHQ 487

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP  ++S  +   +A E+S+  L++   L P L   + L     L+    + + +ME  G
Sbjct: 488 IPFAQVSVDKAATYACEDSDQTLEVHQTLWPLLQANERLRAIYELEMHSSEALFRMERNG 547

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  LL Q S  + + +L LE   Y+++G+ FNL+SPKQLG+I F KL  P   KT T
Sbjct: 548 VLIDAALLAQQSHALGQRILRLETEAYEIAGQPFNLNSPKQLGEIFFDKLGMPVVRKTTT 607

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++   D P+   +LE R LSK+KSTY D L      RT RVHT Y+ A 
Sbjct: 608 GARSTNEEVLEKLAA-DYPLPARLLEHRSLSKLKSTYTDKLGLLALPRTGRVHTHYAQAV 666

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRL+S +PNLQNIP++T  G++IR AF++PP + + SADYSQIELRI+AHI+    L
Sbjct: 667 AVTGRLSSSDPNLQNIPVRTPEGRRIREAFVAPPGRVIASADYSQIELRIMAHISGDPSL 726

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F + LD+HR  AAE+FGV + +VS + RR+AK INF +IYG+S F LA  L + R  
Sbjct: 727 LHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGLDRQA 786

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A +YI+RYF R+PG+ +Y+E+TK   +  GYVET+FGRR+   EINSP    R   ERAA
Sbjct: 787 AKNYIQRYFERYPGVRQYMEETKARAKSLGYVETVFGRRLMLPEINSPNGPRRAAAERAA 846

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AAD+ ++AM++V   L+  K    M++Q+HDELVFE+PE  +      +   
Sbjct: 847 INAPMQGTAADLIKKAMVAVQARLDAEKPEILMIMQVHDELVFELPENAVDWLRAEVPRL 906

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M         LRVPL   + V  NW + +
Sbjct: 907 MAGVAA----LRVPLLAEVGVGGNWDKAH 931


>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
 gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
          Length = 920

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/982 (33%), Positives = 527/982 (53%), Gaps = 75/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    GL  +AI GFCN L ++L         +H  V 
Sbjct: 3   KLFLLDAYALIYRSYYAFLRTPRINSKGLNTSAIMGFCNTLNEVLTKEH----PTHIGVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   TFR+E++P YKA R + PE +   +P+++   +A  IP +++ GFEADD+I T 
Sbjct: 59  FDH-GKTFRHEVFPAYKAQREETPEDIRQSVPIIKQILEAMRIPILQVDGFEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGI-PPEKMV 180
                 +G    +++ DKD  QL+ P   ++        E +  + V  K+GI  P +++
Sbjct: 118 ATRFGTDGIDTFMLTPDKDYGQLIGPRVFIFRPRHGGGYETLGEKEVESKYGIPTPAQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GDS DN PG PG+G KTAA L+ ++G+++N+L +   IK  K R+ I    E  
Sbjct: 178 DLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNLLRHTDEIKG-KLRDKIENAVEDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S+ L  +RTDVP+ + L+ L +E  +  +L    + LEF  L N++    +    N+E
Sbjct: 237 KMSKLLATIRTDVPLQLSLDELKVEQPDEVKLRRIFEELEFKTLANKLLNKSELKPKNVE 296

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             +                                     + S  TP+            
Sbjct: 297 TQL------------------------------------DLFSVNTPRGQEELEKTNYET 320

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           +      Y  I N +++ +      T    S    T + DA  ++ + ++ S  + K   
Sbjct: 321 HKTVPHEYKLIDNEEEMDRLCDFFMTKEFVSIDTETTSTDAIRAELVGLSFSVEENK--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L  +  +          + +   K  +EN++ LKIG NIKYD  VL+ YG
Sbjct: 378 -----AFYVPLPANREE--------ALKYVRIFKPLYENDNILKIGQNIKYDYEVLNNYG 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK-SRKSSIPIDKISD 535
           ++++G   D M+  Y++      H++  +A+  L Y     +E++    K    +  +S 
Sbjct: 425 VTLQGKMFDTMIAHYLIQPELH-HNMDYMAETLLGYRTIHIEELIGPKGKKQKNMRDLSP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + E+A E++++ L+L  LL P+L    L  ++  ++ P++ V++ ME+ G+ +D + L
Sbjct: 484 TDICEYAAEDADITLRLKHLLEPRLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTA 654
           ++ S   +  +   E+ IY  +GE FN+ SPKQ+GDILF KL+      KTKTGQ+ T+ 
Sbjct: 544 QETSRIFTDRMKQYEQEIYKEAGETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+ +    +P+++NIL +R + K+ STY D+LP  IN RT  +HT ++ A T TGRL+
Sbjct: 604 EVLQSLEA-KHPVVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQTATGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH++    + + F   
Sbjct: 663 SSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA+I+  +I+KV+   R+ AK  NF IIYGI+ + LA ++ IP  EA + I+ 
Sbjct: 723 HDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNGEARELIQD 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YFH FP +  Y+E+ K   R  GY ET+F RR +  +INS  +++R   ER AINAPIQG
Sbjct: 783 YFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAINAPIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AM+ + K  ++  + +KM+LQ+HDEL F V  EE     +I++  M+ AC  
Sbjct: 843 TEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEEREQVERIVIEEMQNAC-- 900

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL  +    +NW E +
Sbjct: 901 --QLNVPLTADAGWGSNWLEAH 920


>gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 924

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/980 (40%), Positives = 589/980 (60%), Gaps = 71/980 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI---A 58
           +K +H +L+DGS +I+RA+YA P L+RK DGLPV A++GFC+ML+KLL++S+        
Sbjct: 5   KKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCSMLFKLLEDSKSNENLQKP 64

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +HFAVIFD    TFRNEIY DYKANR + P+ L PQ   +R +  AF +P++++  +EAD
Sbjct: 65  THFAVIFDAARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVVAFNLPSVDLPNYEAD 124

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IATY      +G  VTI+S+DKDLMQL      ++D +K + I  E ++ K+G+ PEK
Sbjct: 125 DLIATYVEQILAKGAKVTIVSSDKDLMQLYRKDVRIFDPMKNKFITPEDIVTKFGVGPEK 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +Q+L GDS DN+PG+PGIG KTAA L+ +YG LE +L NA  IKQ KRRE ++E  +
Sbjct: 185 VIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLDNAQEIKQNKRRETLIENKD 244

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +S+KLV L  D P+   LE   L+  +  +L  FL+ +EF +L++ V + Y      
Sbjct: 245 KAIISKKLVTLMKDAPVERKLEEFHLKKIDKNKLYKFLREMEFNRLLSSVISAYG----- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                        E   ++   E   + 
Sbjct: 300 ---------------------------------------------EPLLEETAKETKPEK 314

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+  +Y  I N K+I +W+ + E  G  +    T ++DA  +  + I++ST   K 
Sbjct: 315 KHQNISKKNYHLITNEKEIDEWINEAEEAGELAIDTETSSLDAHQTDLVGISLSTKIGK- 373

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I +               + ++  LK   E++   KIG NIK+D +VL++
Sbjct: 374 -------ACYIPIGHKFKG-----CLKKETVIKKLKPLLEDKSVKKIGQNIKFDFIVLYK 421

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
           +GI+M   ED MLMSYVLD+G++ H++ ++++  L +     KEI+ + K  I    +  
Sbjct: 422 HGINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQHKTISFKEIVGTGKKEINFSDVEL 481

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +  E+A E++++  +L+ +    L +EKL ++YE  +KP+I +++ MEI GI+ID   L
Sbjct: 482 DKAMEYAAEDADITYRLYKIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFL 541

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K +S +  K +  LE+ ++ +S +KFN++SPKQLG+I++  LK     KT+ G + T A 
Sbjct: 542 KVLSEKFEKKISKLEKEVFKISKKKFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNAS 601

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +    +   K IL+WRQ+SK+K+TY+D+LP HIN  T+RVHT + LA+T TGRLAS
Sbjct: 602 VLEDLAFKGHEFPKLILDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLAS 661

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPIK++ G+ IR+AFI+     LISADY+QIE+RILA +A++  L + F N+ 
Sbjct: 662 SDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNE 721

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + A+++F V+I+KV   MRR AK INF IIYGIS + LA Q+ +   EA +++  Y
Sbjct: 722 DIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNAY 781

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F +FP I  Y++ T  F R++GYV  IFGRR H++ IN    ++RN  ERAAINAPIQGS
Sbjct: 782 FLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQGS 841

Query: 896 AADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           A++I R AMI ++K  E      +K+LLQIHDEL+FEVP +E+   ++II   M      
Sbjct: 842 ASEIMRLAMIRLNKKFESIKNNKSKILLQIHDELIFEVPVKEVKNITEIIKDEMTSVTES 901

Query: 955 KI-NLRVPLKVNIKVSNNWQ 973
            +     PL V++   +NW 
Sbjct: 902 DLHTFSTPLTVDVNTGDNWG 921


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/988 (34%), Positives = 522/988 (52%), Gaps = 65/988 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M + + LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 7   MNQNSKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 62

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 63  HIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEADD 122

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI- 174
           +I T    A K+G    +++ DKD  QLV+    +Y         E + IE V  K+ I 
Sbjct: 123 VIGTLATEAGKQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGIEQVKAKFDIQ 182

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  + 
Sbjct: 183 SPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVE 241

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E    S+ L  ++ DVPI + +  L+ E  +   L    + LEF  L+ R+      
Sbjct: 242 TNREMIIFSKFLATIKIDVPIQLDMNSLVREQADEEALRKIFEELEFRTLMERIFKKESS 301

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            + +    +     +  +G   E                          E TP     E+
Sbjct: 302 PSPSPAGPLFSQENSPIQGNLFE--------------------------EFTPDTPTEEK 335

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
              L         Y  I      Q+ ++KL T    +    T   D   ++ + ++ S  
Sbjct: 336 KSNLESLNSLTYDYQLIDTESKRQEIIKKLLTSEILALDTETTGTDPMDAELVGMSFSIA 395

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +         +  +I +     +          +I+   +  F+N+  LK+G NIKYD L
Sbjct: 396 EN--------QAFYIPVPAGREE--------ATKIVREFESVFKNDKSLKVGQNIKYDML 439

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS-RKSSIP 529
           VL  YGI +RG   D M+  YVL      H++  +A+ +L Y     +E++    K    
Sbjct: 440 VLQNYGIEIRGRLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGPRGKGQKN 498

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +S   V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G++
Sbjct: 499 MRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVNIESNGVR 558

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D + LKQ S   +  L S+E+ IY+L+GE+FN++SPKQ+G+ILF KLK      KTKTG
Sbjct: 559 LDTEALKQSSEHFTTRLQSIEKEIYNLAGEEFNIASPKQVGEILFDKLKIVEKAKKTKTG 618

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + LE +    + +I  ILE+R L K+ STY D+LP  IN RT R+HT ++   T
Sbjct: 619 QYVTSEEVLESLR-NKHDVIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFNQTVT 677

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH++K   + 
Sbjct: 678 ATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMI 737

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F +  DIH   AA+I+ V+I++V+  MRR AKT NF IIYGIS F LA ++ + R EA
Sbjct: 738 DAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 797

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF  +P +  Y++K+    R++GYVETIF R+    +INS  + +R   ER AI
Sbjct: 798 KELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 857

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AM  +++  +   L  KM+LQ+HDEL F VP +E     Q+++  M
Sbjct: 858 NAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKEIVEQVVIEEM 917

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           EKA      + VPLK +     NW + +
Sbjct: 918 EKA----YRMHVPLKADCGWGTNWLQAH 941


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/988 (34%), Positives = 529/988 (53%), Gaps = 55/988 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  LFLVD  + I+R +YA     R    GL  +AI GF N L  +++  R +    
Sbjct: 1   MADQKRLFLVDAYALIFRGYYAFIKNPRINSKGLDTSAIMGFMNSLLDVIKRERPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD    T R E++ +YKANR   PE +   +P +    +A  IP +  +GFEADD
Sbjct: 57  HLAVCFDKGGSTDRVEMFQEYKANRDATPEPITQAIPYICNILEAMHIPIMVKEGFEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPP 176
           +I T +  AEKEGF   +++ DKD  QLVS    +Y        DI     V++K+ +  
Sbjct: 117 VIGTLSKQAEKEGFKTFMVTPDKDFAQLVSENIFMYKPRFGGGYDIWGVPEVLEKFQVTD 176

Query: 177 E-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++    + GDS DNIPG+PG+G KTA   L ++G++E +L N  ++K  K +E +  
Sbjct: 177 PLQVIDFLGMMGDSADNIPGLPGVGEKTAKKFLAQFGSMEGLLANTDQLKG-KMKEKVEA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E   LS+KL  +  DVP++   +   L+  +  ++      LEF  L+     T+  +
Sbjct: 236 NGELGLLSKKLATIMLDVPVSFNAKDFTLDQPDVEKVKEIFNELEFRNLLTNFLKTFATE 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                      + +  K +A   E          QF   +   S   +++       E L
Sbjct: 296 TTTKTAETDTKSESNTKKLATNAE---------GQFDLFAAPGSGSITQE-------ESL 339

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                    N  Y  I +T   +  ++KL    S  F   T  + A   + I IA S   
Sbjct: 340 SGFKNINNTNHFYQHIDSTLSRKLLIKKLLQQPSVCFDTETTGLKALEVELIGIAFSYEI 399

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K                            TK IL   + FFE+E   K+GHN+KYD  V
Sbjct: 400 GKGY----------------YVSFPENQEETKAILEEFRPFFESEMIEKVGHNLKYDIKV 443

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRKSSIPI 530
           L  Y + ++G   D M+  Y+++     H++  +A+ +L+Y      + I K  K+ + +
Sbjct: 444 LSNYNMPVKGKLFDTMIAHYLINPDM-RHNMDVLAETYLNYHPVSITELIGKKGKNQLSM 502

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +      E+A+E++++  QL      +L    +  ++ +++ P++ V++ MEI GI +
Sbjct: 503 RVVPIKDQTEYAVEDADITYQLKQHFTKELDSGNVTELFNKVELPLVSVLTAMEIEGINV 562

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ+S  ++ ++  LE+ IY+ +GE+FN++SPKQLG +LF  +K      KTKTGQ
Sbjct: 563 DTNFLKQLSTALTDDINRLEKEIYEQAGEEFNIASPKQLGIVLFENMKLVDKPKKTKTGQ 622

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +K T +D+      ++ II++I E+RQ  K++STY D+LPN INK+T R+HT Y  A   
Sbjct: 623 YK-TGEDILSFLAKEHKIIRDIQEYRQYKKLQSTYVDALPNEINKKTGRIHTQYMQAVAA 681

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A +++   + 
Sbjct: 682 TGRLSSNNPNLQNIPIRTERGREVRKAFVPKDENYVLLAADYSQIELRIIAALSEEETMI 741

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N  DIH   AA++FGV+I  V+ + R +AKT+NF I+YG+S F L+ Q  + R EA
Sbjct: 742 NAFKNGEDIHASTAAKVFGVDINDVTREQRSNAKTVNFGIVYGVSAFGLSNQTDLSRGEA 801

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  Y+  +P +  Y+    +F R++GYVET+  RR +  +INS  + +R+  ER A+
Sbjct: 802 KELIDTYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNAMVRSGAERNAV 861

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI++H         +KMLLQ+HDELVF+  ++E+ T   II + M
Sbjct: 862 NAPIQGSAADIIKLAMINIHNRFIQEGFKSKMLLQVHDELVFDAHKDELETIKPIIKNEM 921

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A      + VPL V + +  NW E +
Sbjct: 922 ENA----FKMTVPLDVEMGIGQNWLEAH 945


>gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
 gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
          Length = 948

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/989 (39%), Positives = 572/989 (57%), Gaps = 54/989 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  + HL+LVDGSS+I+RA++  P L+   DG PV A+ G+  MLWKL  +  K    +H
Sbjct: 1   MADKQHLYLVDGSSYIFRAYHRLPPLT-DPDGTPVGAVYGYTTMLWKLADDLDKADGPTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+ D  + +FRNEIY  YKANRP  PE L+PQ PL+R AT+AF +P IE +  EADD+
Sbjct: 60  LAVVLDKSSQSFRNEIYDQYKANRPDPPEDLVPQFPLIRDATRAFSLPMIEEENVEADDM 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT----TCLYDTVKEEKIDIEHVIKKWGIPP 176
           IA+Y   A+  G+ VTI+S+DKDLMQLV         + DT+K  +I ++ V  K+G+PP
Sbjct: 120 IASYAREAQARGWDVTIVSSDKDLMQLVGEKDGAKIDMLDTMKSARIYVDEVKDKFGVPP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E +  + AL GDS+DNIPGI G+G KTA+ L+ E+G+L   L  A  +K+ K +E +LE+
Sbjct: 180 ELVGDVLALMGDSVDNIPGIFGVGPKTASKLIDEHGSLTAALDAAEDMKKSKLKERLLEH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A LSR LV LR D P+ I +E + L+   G  L +FL+   FT L+ R+        
Sbjct: 240 RKDAELSRVLVTLREDCPLPIAIEDMKLDGIPGEPLAAFLEKHGFTSLLRRLDAGS---G 296

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           +   P  L+    E KG                        TS+ N +  P+   ++R  
Sbjct: 297 SPDRPNDLNPAKVETKG---------------------DSGTSEGNRQPLPEFPAVDR-- 333

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     +Y  +   + ++ W+ K       +    T  +DA  +  + I+++T   
Sbjct: 334 ---------SAYETVQTMERLEHWIAKCRAARIIAVDTETSALDAMRADLVGISLATGAN 384

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +     +  +              +     + ++ LK   E++  LKIG NIKYD  VL
Sbjct: 385 -EACYIPLGHLNDGGGGSDMFSEKPEQVPLDDAVAALKPLLESDAVLKIGQNIKYDLNVL 443

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRS-----SHDIASIAQKWLSYT---RKEILKSRKSSI 528
            RYGI++   +D M++S+ LD+GRS      H +  ++++ L +T    KE+  + +  I
Sbjct: 444 ARYGIAVAPIDDTMILSFDLDAGRSEGGVGGHGMDELSERHLGHTPLSFKEVCGTGRKQI 503

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P  ++   +  E+A E+++V  +L   L+P+L +E    +YER+D+P+I VV+QME  GI
Sbjct: 504 PFGEVPLDKATEYAAEDADVTWRLHQHLKPRLAIEHGARIYERVDRPLIPVVAQMERHGI 563

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D+  L ++S E +     LE+ I++L+G++F + SPKQLG++LF  L    G K K+G
Sbjct: 564 KVDRARLAKLSEEFATETAKLEKTIHELAGKEFTVGSPKQLGEVLFDDLGHKGGKKGKSG 623

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T    LE+++     I   +LEWRQL+K+KSTY D+L   IN  T RVHT YSL   
Sbjct: 624 QYSTDQSVLERLSGDGAEIADKVLEWRQLTKLKSTYTDALQQAINPDTGRVHTSYSLVGA 683

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+T +G++IR AF+      L++ADYSQIELR+ AH+A +  L 
Sbjct: 684 QTGRLSSTDPNLQNIPIRTPIGRQIREAFVPENGNVLLAADYSQIELRLAAHMADVPELK 743

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH   A E++G    +     R  AKTINF+I+YGIS + LA +L+I   EA
Sbjct: 744 EAFAEGEDIHARTAREMYG----EADRDTRARAKTINFAILYGISRWGLAGRLKIEPDEA 799

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF RFPGI  YI +T   VR+ GY ET+FGR+  +  I S   + R  +ERAAI
Sbjct: 800 QELIDTYFKRFPGIQSYIHETLETVRERGYSETLFGRKTWFPRIGSKNQAERQGSERAAI 859

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           NAPIQG++ADI +RAM  +  +LED  L   +MLLQ+HDELVFE+PE ++  AS II   
Sbjct: 860 NAPIQGTSADIIKRAMARMMPALEDAGLEHVRMLLQVHDELVFELPEGDVEAASPIIERV 919

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M +A LP + L VPL + I    +W   +
Sbjct: 920 MAEAALPAVELSVPLGIEIGTGASWDAAH 948


>gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
          Length = 937

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/993 (34%), Positives = 524/993 (52%), Gaps = 73/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMAQLT-APDGAPTGAMYGVLNMLRRL----RADYVHDY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++PDYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 56  CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRLIGWPVLVIPQVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T   +A + G+ V + + DKD+ QLV+    L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 116 IGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +A+ IK  K  EN+    +  
Sbjct: 176 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIKG-KVGENLRAALQRL 234

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 235 PLSYDLVTIKTDVDLHTELSDGIESLRRTAPKWAQLVVDFKRWGFRTWLK---------- 284

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E           F S S       + + P +   E   
Sbjct: 285 --------------------EAESRMHEAADGDLFGSDSIGEQAALNAEVPSEKQPELAP 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +     +   + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 TP-----EKLDYQAVTTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAG 379

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         I+I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 380 E--------AIYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 430 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 488

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 489 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 547

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 548 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 607

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 608 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 666

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 667 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 726

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 727 FQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKN 786

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 787 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAINA 846

Query: 891 PIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQI 943
           P+QG+A+D+ +RAMI V + L + +       L +K+++Q+HDELV EV E E+    + 
Sbjct: 847 PMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVKEK 906

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M K       L VPL   + V  NW+E +
Sbjct: 907 LPQIMAKVDGGL--LDVPLVAEVGVGENWEEAH 937


>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
 gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter sp. ADP1]
          Length = 920

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/977 (34%), Positives = 547/977 (55%), Gaps = 63/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAFHALPPLTT-STGLQTNAIRGAISAIQKLMRRTQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+E+ P YK +RP +P+ L  Q+P +    +A GIP   + G EADD+I T 
Sbjct: 57  FDTPEPTFRHELSPIYKGDRPSMPDELAQQIPYLHALIKALGIPLYMLPGAEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AEKEG  V I + DKD+ QLV+    L D+ K++ +DI+ V  K+G+ P +++    
Sbjct: 117 AKRAEKEGHQVLISTGDKDMAQLVTEKVTLEDSFKDKPMDIQGVFDKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PGIG KTAA LL EYG++  IL N  +IK  K  +NI + A+   +  
Sbjct: 177 LMGDASDGIMGVPGIGAKTAAKLLTEYGSIGGILENVDQIKG-KVGQNIKDNADGIVIDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+ + +  + L L D +   L +    LEF   +  +   ++  +   +    
Sbjct: 236 QLASIVCDLDLALTWDDLQLRDPHVETLRNLYTELEFRNQLQSLDHPHNPVSQTYKQTAQ 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            ++  E               I+T   +SL+ +  ++ +                     
Sbjct: 296 QMDKVE-----------VAPQIETEDQASLTSEDDQLGTAN------------------- 325

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +     +++ ++    +    T ++D   ++ +  +++  D +D     +
Sbjct: 326 ---YHTVLTQEAWDALLKRFQSEKRFAIDTETTSLDYRVAEMVGFSVAF-DAQDAYYVPL 381

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         D+  +    ++IL+ LK   E+E   KIGH++KYD  +   + + ++
Sbjct: 382 THDY---------DNAPEQLNREQILAQLKPILEDETVHKIGHHLKYDAHIFANHSVELK 432

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYV++S  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 433 GWYFDTMLASYVINSVATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 492

Query: 541 HAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  +++ ME  GI++D   L Q+S
Sbjct: 493 YAAEDAHVTYRLYEVLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLGQLS 552

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E ++ +L LE    +L+GE FN+SSPKQ+G+ILF K+    G KT TGQ  T+   LE+
Sbjct: 553 VEFTETILGLENQAIELAGESFNVSSPKQVGEILFDKMGLKGGKKTATGQHSTSESILEK 612

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++PI + ILE R LSK+K+TY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 613 V---EHPIAEVILEHRTLSKLKNTYTDRLVEQSHNETHRVHTSYHQALTATGRLSSSDPN 669

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+ ++G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 670 LQNIPIRGEIGRQIRKAFIAPEGRILLAADYSQIELRLMAHFSQDEALLDAFQHGQDVHR 729

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+  + +E+V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YFHR+
Sbjct: 730 RTAAEVLNIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFHRY 789

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 790 PGIYEYMQRTRQVALEQGFVETILGRRLYTPDIDARNMMVRKGAERAAINAPLQGSAADI 849

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFEV  +     +  +  +M+      +N+ 
Sbjct: 850 IKLAMIEVDKMLPKDQ--AKLLLQVHDELVFEVDADLADELAPKLAETMQSV----VNIS 903

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW+E +
Sbjct: 904 VPLLVEVGQGLNWEEAH 920


>gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594]
          Length = 938

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/993 (34%), Positives = 520/993 (52%), Gaps = 72/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRRTAPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQI 943
           P+QG+A+D+ +RAMI V + L + +       L +K+++Q+HDELV EV E E+    + 
Sbjct: 848 PMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVKEK 907

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M K       L VPL   + V  NW+E +
Sbjct: 908 LPQIMAKVDGGL--LDVPLVAEVGVGENWEEAH 938


>gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
 gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
          Length = 936

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/990 (34%), Positives = 521/990 (52%), Gaps = 68/990 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGL---PVNAIAGFCNMLWKLLQNSRKESI 57
           M     L LVDGSS++YRAF+A P L             AI G  NML  L    RKE  
Sbjct: 1   MTDPKTLVLVDGSSYLYRAFHALPDLRVVPGDARSAATGAIRGMINMLQAL----RKERP 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           A++ A +FD    TFR+ IYP+YKA R  +PE L  Q+       +  G P + I G EA
Sbjct: 57  ANYAACVFDASGPTFRDSIYPEYKARRAPMPEDLRAQIAPTHEVVRLLGWPVLAIAGVEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+I T    A  +G  V + S DKDL QLV+    + DT+  +K D+  V  ++G+PP+
Sbjct: 117 DDVIGTLAVTAAAQGMQVLVSSGDKDLSQLVNQHITIVDTMSGKKRDVAGVTAEFGVPPQ 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            MV  Q L GD++DN+PG+P +G KTAA  LQEYG+L+ +L +A  IK     EN+    
Sbjct: 177 LMVDYQTLMGDAVDNVPGVPKVGPKTAAKWLQEYGSLDALLAHAHEIKG-VVGENLRGAI 235

Query: 238 ETARLSRKLVMLRTDVPITIP------LEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                 R+LV +RTD  +         L+ L +     P L +F +   F  L   +   
Sbjct: 236 GWLPTGRQLVTIRTDCDLAAHVPGLPALDALAMGAPQVPGLRAFYEKYGFKGLARAL--- 292

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                         +D        S  +       +   P  + 
Sbjct: 293 ------------------------------QDPAPPALPLSGATGDLFADPAADVPVPVP 322

Query: 352 LERLQKL-SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                   S    +   Y  I+N +D +QW+Q+L+     +    TD++D   ++ + I+
Sbjct: 323 GHGADPPASAARQHPVQYESILNWQDFEQWLQRLQQADLVALDTETDSLDEMRAQIVGIS 382

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           +S               +I L  H+  D+        ++L+ LK + E+    K+G +IK
Sbjct: 383 LSVQPGA--------AAYIPL-QHSGPDAPA-QLPIGQVLARLKPWLEDGRRHKLGQHIK 432

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKS 526
           YD+ V   +GI ++G+  D ML SYVL+  +  H++ S+A++       + +++      
Sbjct: 433 YDRHVFANHGIEVQGYVHDTMLQSYVLEVHK-PHNLGSLAERHTGRKGISYEDLCGKGAH 491

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            +P  ++   +   ++ E++++ L +   L P+L     L     L+    + + ++E  
Sbjct: 492 QLPFAQVPVDKAAAYSCEDADLTLNVHQTLWPQLQAHDRLRFIYELEIASSEALYRIERN 551

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID   L Q S E+ + +  L+ + Y L+G+ FNLSSPKQLG+I F KL  P   KT 
Sbjct: 552 GVLIDAPTLAQQSHELGQRIEQLQADAYALAGQPFNLSSPKQLGEIFFDKLGMPVVKKTA 611

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   T  + LE++   + P+   +LE R L K+K TY D L      RT RVHT Y+ A
Sbjct: 612 TGARSTDEEVLEKL-AENYPLPAKLLEHRGLIKLKGTYTDKLTQLALPRTGRVHTHYAQA 670

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRL+S +PNLQNIPI+T  G+++R AF++P    + SADYSQIELRI+AH++    
Sbjct: 671 VAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGCVIASADYSQIELRIMAHLSDDQA 730

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F   LD+HR  AAE+FGV +++VS + RR+AK INF +IYG+  F LA  L +   
Sbjct: 731 LLHAFHAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMGSFGLAKNLGLENK 790

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            AA YI RYF R+PG+ +Y+++T+   + NGYVET+FGRR++  EINSP    R+  ER+
Sbjct: 791 AAAAYIDRYFQRYPGVKQYMDQTRAAAKSNGYVETVFGRRLYLPEINSPNGPRRSGAERS 850

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AAD+ + AM++V K L+  + A +M++Q+HDELVFE+P   +      +  
Sbjct: 851 AINAPMQGTAADLIKMAMVAVQKELDAQQPAIRMIMQVHDELVFELPGNAVDWLRTHVPR 910

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M +       L+VPL   + V  NW++ +
Sbjct: 911 LMAEVA----TLKVPLLAEVGVGPNWEQAH 936


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/988 (33%), Positives = 538/988 (54%), Gaps = 52/988 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  LFLVD  + I+R +YA     R    G   +AI GF N L  +++  R +    
Sbjct: 1   MSNQKRLFLVDAYALIFRGYYAFIKNPRINSKGEDTSAIMGFMNSLLDVIKRERPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R E+Y +YKANR + PE +   +P +    +A  IP +  +G+EADD
Sbjct: 57  HLAVCFDKGGSVDRVEMYQEYKANRDETPEGIKTAVPYIYEILKAMHIPIMVKKGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIPP 176
           +I T    AEKEG+   +++ DKD  QLVS    +Y  V     E   I  V +K+ +  
Sbjct: 117 VIGTLAKKAEKEGYKTFMVTPDKDFAQLVSENIFMYRPVFGGGYETWGIPEVQQKFEVTD 176

Query: 177 E-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++    + GD+ DNIPG+PG+G KTA   L  YG++E +L N   +K  K +E +  
Sbjct: 177 PLQVIDYLGMMGDASDNIPGLPGVGPKTAKKFLAAYGSMEGLLANTHELKG-KMKEKVEA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E   LS+KL  +  DVP+    +   L+  +  ++    + LEF +L +    T+  +
Sbjct: 236 NGELGLLSKKLATIMLDVPVEFDAKDFELDHPDIEKVKQIFQDLEFRRLTDNFLKTFSAE 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                      N    K +A +       +    QFS      +   SE T +       
Sbjct: 296 ------TTAPTNEIPEKKVAPKVTTKEQKSAGAGQFSLFGGDDTSNTSEATSEYT----- 344

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +    ++  Y  +      + +V+ L    S  F   T  ++   ++ + IA S   
Sbjct: 345 --RNTAETSSHFYQSVAPGMATKLFVKNLMNQTSVCFDTETTGLNPLTAELVGIAFSWET 402

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K          ++      ++         +E++  L+ FFEN++  KIG N+KYD  V
Sbjct: 403 GKG--------FYVPFPEDKNE--------AQELIEVLRPFFENDNIEKIGQNLKYDIKV 446

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPI 530
           L +Y + ++G   D ML  Y+++     H++  +A+ +L+Y      + I K  K+ + +
Sbjct: 447 LAKYNVEVKGKLFDTMLAHYLINPDM-RHNMDVLAETYLNYTPISITELIGKKGKNQLSM 505

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            ++   +  E+A+E++++ LQL      +L       ++  ++ P++ V++ ME+ GI +
Sbjct: 506 REVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFNDIELPLLRVLAAMELEGINL 565

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D+D L  +S E++ ++ +LE++IY+ +GE+FN++SPKQLG ILF K+K      KTKTGQ
Sbjct: 566 DKDFLNSLSEELNTDIANLEKSIYEAAGEEFNIASPKQLGVILFEKMKLVDKPKKTKTGQ 625

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  TA+D+      D+ II+ +L++R LSK+KSTY D+LP  +++ T RVHT Y      
Sbjct: 626 YS-TAEDVLSYLAKDHKIIQQVLDFRGLSKLKSTYVDALPLQVDESTGRVHTDYMQTVAA 684

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A ++K   + 
Sbjct: 685 TGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMI 744

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+N  DIH   A+++F V I +V+ + R +AKT+NF IIYG+S F L+ Q  + RSEA
Sbjct: 745 EAFKNGEDIHASTASKVFNVPITEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRSEA 804

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I+ Y+  +P +  Y+ +  +F R NGYV+T+ GRR +  +INS  + +R   ER A+
Sbjct: 805 KELIETYYATYPKLRAYMSEQVDFARDNGYVQTVLGRRRYLKDINSRNAVVRGAAERNAV 864

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI+++K L+     TKMLLQ+HDELVF+V + E+     +I   M
Sbjct: 865 NAPIQGSAADIIKIAMINIYKKLQTGAYKTKMLLQVHDELVFDVYKPELEGLKNLIKTEM 924

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A      L VPL V++ +  NW E +
Sbjct: 925 ENA----YELSVPLDVDLDIGANWLEAH 948


>gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196]
          Length = 938

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/993 (34%), Positives = 518/993 (52%), Gaps = 72/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++ +WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDSMLASYIIESHLG-HGLDELSGRWLGLETITYESLCGKGAKQIGFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T+ G+K+RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQI 943
           P+QG+A+D+ +RAMI V + L + +       L +K+++Q+HDELV EV E E+    + 
Sbjct: 848 PMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVKEK 907

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M K       L VPL   + V  NW+E +
Sbjct: 908 LPQIMAKVDGGL--LDVPLVAEVGVGENWEEAH 938


>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
          Length = 923

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/977 (34%), Positives = 547/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  EG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLKG-KISQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +    
Sbjct: 236 QLASIVCDLPLELDWHELKLIDPNVDALRNLYTELEFRNQLQSLEHPNNPNSSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ ++    +I+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTVVQNDVKPTESIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q +Q+++     +  I T ++D   ++ +  +I+   Q        
Sbjct: 329 ---YHTVLTQEAWDQLLQRMQNADHFAIDIETTSLDYRIAEMVGFSIAFDAQ-------- 377

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++ L+ +   ++  +    ++IL+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 378 DAYYVPLAHNY--ENAPQQLNREQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L  +S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K    LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTREGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFE  +      S+ I   ME      + + 
Sbjct: 853 IKLAMIEVDKVLPKDQ--AKLLLQVHDELVFEADQNIAEELSKQIAKVMESV----VEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGLNWDDAH 923


>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
 gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
          Length = 923

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/977 (35%), Positives = 546/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLKG-KLSQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +    
Sbjct: 236 QLASIVCDLPLELDWHELKLTDPNVEALRNLYTELEFRNQLQSLDHPNNPNSSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ E+    TI+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTVVQNEVKPAETIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+  D KD     +
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF-DAKDAYYVPL 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         ++  +    ++IL+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 385 AHNY---------ENAPQQLDREQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V K L   +   K+LLQ+HDELVFE  +      S+ I   ME      + + 
Sbjct: 853 IKLAMIAVDKILPKDQ--AKLLLQVHDELVFEADQNIAEELSKQIASVMESV----VEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGQNWDDAH 923


>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
 gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
          Length = 908

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/981 (34%), Positives = 519/981 (52%), Gaps = 82/981 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q    + LVDGSS+++RA++A P L+   +  P  AI G  +ML ++     ++   S  
Sbjct: 4   QTNPPVVLVDGSSYLFRAYHALPPLTTSKN-HPTGAIKGVISMLRRI----EQDFPGSKT 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD    TFR+++Y +YKANRP +P+ L  Q+  +    +A G+P + + G EADD+I
Sbjct: 59  VVVFDAKGKTFRHDMYEEYKANRPPMPDDLAVQIEPIHEIVRAMGLPLLIVPGVEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  + A  +G  V + + DKD+ QLVS    L +T+ E  +D + V++K+G+ PE+++ 
Sbjct: 119 GTLAHEATSKGIDVVVSTGDKDMAQLVSDHVTLINTMTETAMDRDGVVEKFGVTPEQIID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD +DNIPG+   G KTA   LQ Y NL+N++ ++  IK  K  E + E  +T  
Sbjct: 179 YLALVGDKVDNIPGVNKCGPKTAVKWLQSYDNLDNLIEHSDEIKG-KIGEYLREATDTLP 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LSR+L  +RTDV +                             +  +      DA+ +E 
Sbjct: 238 LSRELATIRTDVELEFG--------------------------LEDLQERQQDDASLLE- 270

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                        F     +T     E         +  +    
Sbjct: 271 ----------------------------LFKEYEFRTWIAELENGSSSDEGSQSSQPQPK 302

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P     Y  I    D+ QW++KL+     +F   T ++    ++ + ++ +    K    
Sbjct: 303 PSVEKQYQVITEQADLDQWLKKLKDSDLFAFDTETTSLRYMDAEIVGVSFAVEPGK-AAY 361

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             +   ++       +DS         +L  LK   E+    K+G N+KYDK VL  + I
Sbjct: 362 VPLGHDYMGAPEQLDRDS---------VLEQLKPLLEDPKHKKVGQNLKYDKNVLANHDI 412

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQ 537
            + G   D M+ SYVL+S  + HD+ S+A+ +L     T + I       +  ++I    
Sbjct: 413 QLEGIAEDTMVESYVLNSVGTRHDMDSLARTYLDEETITYESIAGKGAKQLTFNQIDLES 472

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E++++ L+L   L P+L    KL  VY  +D P++ V+S+ME  G  I    L+
Sbjct: 473 AGPYAAEDADITLRLHQTLAPRLKDTGKLESVYREIDLPLVPVLSRMEQRGTLISASTLR 532

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q S E+++ +  LE+  ++++GE FNL S KQL  IL+ KL      KT  G    TA+ 
Sbjct: 533 QHSQELAERMAELEKEAHEVAGEAFNLGSTKQLQAILYDKLGLRVIKKTPKGAPS-TAEP 591

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + Q    ++ + + I+E R LSK+KSTY D+LP  I+ RT RVHT Y  A T TGRL+S 
Sbjct: 592 VLQELAHEHELPRLIVEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSS 651

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI+T  G++IR+AFI+P   KL++ADYSQIELRI+AH++    L   FE+  D
Sbjct: 652 EPNLQNIPIRTQEGRRIRQAFIAPKGYKLLAADYSQIELRIMAHLSGDRGLLTAFEHGED 711

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH+  AAE+FGV +++V+   RR AK INF +IYG+S F L+ QL + R  A +YI RYF
Sbjct: 712 IHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIYGMSAFGLSRQLEVDRKTAQEYIDRYF 771

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ +Y++  +     +GYVET++GRR++  EIN+    ++   ER AINAP+QG+A
Sbjct: 772 ERYPGVLKYMDNIRKQAHDDGYVETLYGRRLYLPEINARNKQLQQAAERTAINAPMQGTA 831

Query: 897 ADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           ADI +RAMI V   L  +H     M +Q+HDEL+ EV EE +      +V  M  A    
Sbjct: 832 ADIIKRAMIEVDNWLRSEHASDACMTMQVHDELIIEVREEAVDKVKDGLVKRMSAAA--- 888

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
            +L VPL V   V +NW + +
Sbjct: 889 -SLDVPLLVEAGVGDNWDQAH 908


>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
 gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
          Length = 920

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/982 (34%), Positives = 530/982 (53%), Gaps = 75/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    GL  +A+ GFCN L ++L   +     +H  V 
Sbjct: 3   KLFLLDAYALIYRSYYAFLKSPRINSKGLNTSAVMGFCNTLNEVLTKEK----PTHIGVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   TFR+E +PDYKA R + PE +   +P+++   +A  IP ++  GFEADD+I T 
Sbjct: 59  FDH-GKTFRHEAFPDYKAQREETPEDIRQSVPIIKQILEAMHIPILQADGFEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGI-PPEKMV 180
                 +G    +++ DKD  QL+ P   +Y        E +  + V  K+GI  P +++
Sbjct: 118 ATRFGADGIDTFMLTPDKDYGQLIRPNVHMYRPRHGGGYETLGEKEVEAKYGISTPAQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GDS DN PG PG+G KTAA L+ ++G+++N+L +   IK  K RE +    +  
Sbjct: 178 DLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNMLQHTDEIKG-KLREKVEHAKDDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+S+ L  +RTDVPI I LE L +E  +  RL    + LEF  LIN+     +    N E
Sbjct: 237 RMSKYLATIRTDVPIKIELEELKVEKADENRLRELFEELEFKTLINKFLNKSEAKQKNTE 296

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                        Q    ++ TS     +TP+K   + L+    
Sbjct: 297 K----------------------------QLDLFAENTSG--RAETPEKANYKTLKTTPH 326

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I N  ++Q+      T G  S    T + DA  ++ + ++ S  + +   
Sbjct: 327 ------EYKLIGNEDEMQRICDFFMTKGFVSLDTETTSTDAISAELVGLSFSVEENR--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +     +           I+   K  +ENE  LKIG NIKYD  VL  YG
Sbjct: 378 -----AFYVAIPADRQE--------ATRIVGIFKPLYENEQILKIGQNIKYDYEVLSHYG 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK-SRKSSIPIDKISD 535
           ++++G   D M+  Y++      H++  +A+  L Y     +E+L    K    +  +S 
Sbjct: 425 VTLQGKMFDTMIAHYLIQPELH-HNMDYMAETLLGYRTIHIEELLGPKGKKQRNMRDLSP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + E+A E++++ L+L  +L P L    L  ++  ++ P++ V++ ME+ G+ +D + L
Sbjct: 484 TDIYEYAAEDADITLRLKHVLEPHLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTA 654
           ++ S   +  +   E+ IY  +GE FN+ SPKQ+GDILF KL+      KTKTGQ+ T+ 
Sbjct: 544 QETSRIFTDRMKQYEQEIYKEAGETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+ +    +P+++NIL +R + K+ STY D+LP  IN RT  +HT ++ A T TGRL+
Sbjct: 604 EVLQSLEA-KHPVVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQTSTGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH++    + + F   
Sbjct: 663 SSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA+I+  +IEKV+   R+ AK  NF IIYGI+ + LA ++ IP SEA + I+ 
Sbjct: 723 HDIHRATAAKIWHEDIEKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNSEARELIQD 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YFH FP +  Y+E+ K   R  GY ET+F RR +  +INS  +++R   ER AINAPIQG
Sbjct: 783 YFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAINAPIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AM+ + K  ++  + +KM+LQ+HDEL F V  EE     +I++  M+ AC  
Sbjct: 843 TEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEEREQVERIVIEEMQHAC-- 900

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL  +    +NW E +
Sbjct: 901 --QLNVPLTADAGWGSNWLEAH 920


>gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
          Length = 994

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/992 (38%), Positives = 558/992 (56%), Gaps = 67/992 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +  NHL+LVDGS++I+RA++  P L+    G+PV A+ G+  MLWKL ++       +H 
Sbjct: 53  KPRNHLYLVDGSAYIFRAYHRLPPLTN-PQGVPVGAVYGYTTMLWKLAEDLHAADGPTHL 111

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVI D  +VTFRNE+Y  YKANRP  PE L+PQ PL+R AT+AF +  IE  G EADD+I
Sbjct: 112 AVILDKGSVTFRNELYDAYKANRPPPPEDLVPQFPLIRDATRAFSLACIEEAGLEADDLI 171

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP-----TTCLYDTVKEEKIDIEHVIKKWGIPP 176
           A+YT  A  +G+ VTI+S+DKDLMQLV          + DT+K +++ I  V+ K+G+PP
Sbjct: 172 ASYTRAAAAQGWDVTIVSSDKDLMQLVGEYPGGGRVDMLDTMKNQRVFIPEVVDKFGVPP 231

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           EK+  + AL GD++DN+PGI GIG KTA  L+QE G+LE  L NA  +K  K RE+++E 
Sbjct: 232 EKVGDVLALMGDAVDNVPGIRGIGPKTATKLIQENGDLETALANAPAMKAGKLRESLIEQ 291

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+ ARLSRKL+ L+ D  + IPL+   L       L +FL    FT L+ ++ T      
Sbjct: 292 ADMARLSRKLIALKDDCALPIPLDDFTLGPIPPDPLAAFLGEHGFTSLLRKLGTRETAAP 351

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           A                      +                                    
Sbjct: 352 AARTTGAPAPAAPTAPETGNRQPLPEWPA------------------------------- 380

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 I+  +Y  + +  D+++W+ + +  G  +    T  +DA  +  + I+++T   
Sbjct: 381 ------IDTAAYPCVQDEADLEEWIARAQAAGLVAVDTETSALDAVGADLVGISLATGPG 434

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGK---NTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                      +I L    + D   +          L+ LK   E++  LK+G NIKYD 
Sbjct: 435 A--------ACYIPLGHGNTTDMFAERPRQIDKARALALLKPLLEDDSVLKVGQNIKYDL 486

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRS-----SHDIASIAQKWLSY---TRKEILKSRK 525
            VL R+GI++   +D M+MS+ LD+GR       H +  +A++ L +     K++  + K
Sbjct: 487 TVLARHGIAVAPIDDTMVMSFCLDAGRGEPMPFGHGMDELAERHLGHTTIKFKDVAGTGK 546

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +I   ++       +A E++ V  +L  +L P+L  E    +Y+R+D+P++ V++ ME 
Sbjct: 547 KAISFAEVPLPDATRYAAEDAEVTWRLHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEG 606

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI++D++ L  +S E +  + +LE  I++ +G  F + SPKQLG++LF KL +  G K 
Sbjct: 607 HGIKVDRERLATLSGEFATRIAALESVIHEKAGTTFTIGSPKQLGEVLFDKLGYKGGKKG 666

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           K+GQ+ T    LE +      +   +LEWRQLSK+KSTY D+L   IN  T RVHT YSL
Sbjct: 667 KSGQYSTDQSVLETLASQGAEVATLVLEWRQLSKLKSTYTDALQAAINPATGRVHTSYSL 726

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
               TGRL+S +PNLQNIP++T++G++IR AF++ P   L+SADYSQIELR+ AHIA + 
Sbjct: 727 VGAQTGRLSSNDPNLQNIPVRTEIGRQIRDAFVAEPGHVLLSADYSQIELRLAAHIADVP 786

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F +  DIH   A E+FG    +V+   R  AKTINF+I+YGIS + LAT+L    
Sbjct: 787 ALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAILYGISRWGLATRLGTSA 842

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA   I RYF RFPGI  YI +T   VR  GY ET+FGR+  +  I S   + R  +ER
Sbjct: 843 DEAQAMIDRYFERFPGIQRYIHETLEHVRDRGYSETLFGRKTWFPRIASKTQAERAGSER 902

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQII 944
           AAINAPIQG+ ADI +RAM  +  +L +  L   +MLLQ+HDELVFE+PE ++  AS +I
Sbjct: 903 AAINAPIQGTCADIIKRAMARMTPALVEAGLGHVRMLLQVHDELVFELPESDVAAASAVI 962

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              M  A  P + L VPL V I    +W   +
Sbjct: 963 ERVMATAAEPAVKLSVPLGVEIGTGPSWGAAH 994


>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
 gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
 gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
 gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
          Length = 923

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/977 (35%), Positives = 546/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLKG-KLSQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +    
Sbjct: 236 QLASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ E+    TI+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+  D KD     +
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF-DAKDAYYVPL 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         ++  +    +++L+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 385 AHNY---------ENAPQQLDREQVLAQIKPVLENEAVKKIGHHLKYDAHISANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFEV        S+ I   M+      + + 
Sbjct: 853 IKLAMIEVDKILPKDQ--AKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGKNWDDAH 923


>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
          Length = 891

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/977 (34%), Positives = 524/977 (53%), Gaps = 94/977 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + LFL+DGSS+IYRA++A   LS    G P NA+ GF  ML K++++          AV+
Sbjct: 4   DTLFLIDGSSYIYRAYFAIRHLS-SPAGFPTNALYGFTQMLLKVIKDHHPGR----LAVV 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR EIYPDYKANR  +P+ L+PQ+  ++   +AF IP +E++G+EADDII T 
Sbjct: 59  FDKGRTTFRTEIYPDYKANRAAMPDDLVPQIGPIKEMVRAFSIPVLELEGYEADDIIGTI 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               E++G    +++ DKDLMQ+VS    L DT+K+    I  V++++G+ P +++ +  
Sbjct: 119 ARRCEEQGLEAVVVTGDKDLMQIVSDRIRLLDTMKDRVSGIPEVVERFGVGPGQVIDILG 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPG+PGIG KTA  L+QE+G+L+ +L  A  +K K                 
Sbjct: 179 LAGDTSDNIPGVPGIGEKTATKLIQEFGSLDALLERAGEVKGKT---------------- 222

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                                   G RL  F +     +L  R+AT       + +    
Sbjct: 223 ------------------------GERLREFAEQ---ARLSRRLATIVRDVPLDFDLDAF 255

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            +   +N+ +A           K   F++L                     +  S+  + 
Sbjct: 256 AVAPADNRRLA--------ELFKEYGFTTL-------------------MKELTSEATLT 288

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            + Y  I    D +  +  L   G  S  + T +++   +  + I++S  D +       
Sbjct: 289 TEHYRTIFAEADFRALLADLAGAGVFSVDLETTSLNPLEADIVGISLSFRDHE------- 341

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I +    + D          +L  L+    +    K+G N+KYD  VL R+GI M 
Sbjct: 342 -ACYIPVGH--AYDGAPAQLDRTLVLEGLRPLLTDPAVRKVGQNLKYDYQVLRRHGIVMA 398

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G + D M+ SY+++  RS H + S+A + L +     +E+    K  +   ++   +   
Sbjct: 399 GVWCDTMVASYLINPVRSGHGLDSLAVEHLDHRMISYEEVAGKGKDQLNFARVPVEKAST 458

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           ++ E+++    L  L  P++    +  ++  L+ P++ ++++ME  G+++D  LL ++SA
Sbjct: 459 YSCEDADAAWLLHRLFLPRVAEAGMERLFFDLEMPLVPILAEMETAGVKLDLALLGELSA 518

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ-WKTTAQDLEQ 659
            +   L +LEE +  L+ E FNL+SPKQLG++LF K+K P+G KTKT   W T  ++LE+
Sbjct: 519 GLGSQLTALEEQVMALAPEPFNLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELER 578

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + I   IL +R L+K+KSTY D+LP  ++  + RVHT Y+   T TGRL+S EPN
Sbjct: 579 LAEAGHEIAAAILRYRGLAKLKSTYTDALPRLVHPASGRVHTSYNQTVTNTGRLSSSEPN 638

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++TD G+KIRRAFI+     ++SADYSQIELR+LAH+++       F    DIH 
Sbjct: 639 LQNIPVRTDEGRKIRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCDAFARDEDIHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG+  E V+P+MRR AK INF +IYG   F LA QL I    A ++I  YF R 
Sbjct: 699 RTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNYFARH 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG   +++         GYV T+ GRR+   +I S   +IR   +R A+N PIQGSAADI
Sbjct: 759 PGARAFLDGCVAEAEARGYVTTLMGRRLPIPDIASSNGNIRAFAQRNAVNYPIQGSAADI 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ V + +    L +++++Q+HDELVFEVPE E T   +++ H ME A      LR
Sbjct: 819 IKAAMVRVTERMRREGLTSRLIMQVHDELVFEVPEGERTAMERLVQHEMEHAA----PLR 874

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL+ ++ V  NW E +
Sbjct: 875 VPLRADVNVGRNWSEAH 891


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/987 (38%), Positives = 560/987 (56%), Gaps = 61/987 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++NHL+LVDGSS+I+RA++  P L+    G+PV A+ G+  MLWKL ++       +H
Sbjct: 1   MSEKNHLYLVDGSSYIFRAYHRLPPLTN-PRGVPVGAVYGYTTMLWKLAKDLHDADGPTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVI D+ + +FRNEIY  YKANRP  PE L+PQ PL+R AT+AF +P IE++GFEADD+
Sbjct: 60  LAVILDHSSESFRNEIYDQYKANRPDPPEDLVPQFPLIRDATRAFSLPCIEMEGFEADDL 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLV-----SPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           IA+YT  A +EG+ VTI+S+DKDLMQL+      P   + DT+K  ++ I+ V +K+G+ 
Sbjct: 120 IASYTEAAVREGWDVTIVSSDKDLMQLIREPAGGPHVDMLDTMKNVRLGIDAVNEKFGVT 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+ +  + AL GDS+DN+PG+ G+G KTA  L+QEYG+L   L  A  +K  K REN++E
Sbjct: 180 PDLVGDVLALMGDSVDNVPGVRGVGPKTATKLIQEYGSLTAALDGAETMKPGKLRENLIE 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           +   A LSR LV L+ D P+  PL+ L L       L  FL    F  L  ++       
Sbjct: 240 HRAMAELSRILVDLKRDCPLPDPLDALKLGAIPPEPLKLFLDEHGFRSLSAKLDLGTAPA 299

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                P                                         +  TP        
Sbjct: 300 GPPTLP-------------------------------------RAGAAPVTPAADAPSTP 322

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              S  PI+   Y  +   + + +W+         +    T ++D+   + + +++ST  
Sbjct: 323 TLPSMPPIDRARYETVTTIEALDRWIADARAAHVVAVDTETASLDSVTGRLVGVSLSTGA 382

Query: 416 QKDDTSFKVETIFIDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            K          +I L    +       +     + L  L   F ++  LK+GHN+KYD 
Sbjct: 383 GK--------ACYIPLGHGGTDMFAEKPEQIAMGDALERLGALFADDAVLKVGHNLKYDI 434

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
            VL ++G+++  ++D +LMS+ LD+G+  H +  +A+  L +     K++  + KS I  
Sbjct: 435 GVLAQHGVTVAPYDDTLLMSFALDAGKHQHGLDELAKLHLDHVCLSFKDVCGTGKSQISF 494

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            ++   +  E+A E++ V  +LW LL+ +L +E    VYE +D+P+  VV  ME  GI +
Sbjct: 495 AEVQLDRATEYAAEDAEVAWRLWKLLKLRLPLEGGTRVYEMVDRPLAAVVEGMERAGIMV 554

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D+D L ++S E +  +L +E  I+ L+G+ F + SP+QLG+ILF K+    G K K+G W
Sbjct: 555 DRDYLAKLSGEFANEMLRIEGEIHALAGQPFAIGSPRQLGEILFDKMGLKGGRKGKSGDW 614

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T   +LE++     PI + ILEWRQL+K+KSTY D+L   +N  T RVHT YSL    T
Sbjct: 615 STDQNELERLERDGVPIARKILEWRQLAKLKSTYTDALQEQVNATTGRVHTSYSLVGAQT 674

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T++G++IR AFI+ P   LI+ADYSQIELR+ AH+A +  L + 
Sbjct: 675 GRLSSTDPNLQNIPIRTEVGRQIRDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEA 734

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   A E+FG    +V+   R  AKT+NFSI+YGIS + LA +L I   EA  
Sbjct: 735 FARGDDIHAATAIELFG----EVNRDTRGKAKTVNFSILYGISRWGLAGRLEITPDEAQA 790

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I RYF RFPGI +YI  T    R  GY ET+FGR+  +  I +   + R  +ERAAINA
Sbjct: 791 LISRYFERFPGISDYISDTLETARARGYTETLFGRKTWFPRIKAANQNERAGSERAAINA 850

Query: 891 PIQGSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           PIQG++AD+ +RAM  +  +L D  L   KMLLQ+HDELVFE PE++   A ++I   M 
Sbjct: 851 PIQGTSADLIKRAMARMPGALADAGLADVKMLLQVHDELVFEAPEDKAAAAGEVIRAVMM 910

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A  P + L VPL+V I    +W + +
Sbjct: 911 GAAEPALKLSVPLEVEIGTGKSWGDAH 937


>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
 gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
          Length = 926

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/990 (35%), Positives = 527/990 (53%), Gaps = 78/990 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDG----LPVNAIAGFCNMLWKLLQNSRKES 56
           M  +  L LVDGSS++YRAF+A P L R   G        AI G  NM+  L    RKE 
Sbjct: 1   MSDKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDRASAATGAIRGMINMMQAL----RKEV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A + A +FD    TFR+ IYP YK  R  +P+ L  Q+  +    +  G   +++ G E
Sbjct: 56  HADYAACVFDAKGPTFRDTIYPAYKQQRSPMPDDLRTQIAPIHEVVRLLGWKVLDVPGVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T   +A ++G  V + S DKDL QLV     + DT+  ++ D+  V  ++G+P 
Sbjct: 116 ADDVIGTLAVVAARQGIDVIVSSGDKDLAQLVDERITIIDTMNGKRRDLAGVEAEFGVPA 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             M+  Q L GD +DN+PG+  +G KTAA  L EYG+L+ ++ +A +IK     EN+ + 
Sbjct: 176 RLMLDYQTLVGDQVDNVPGVEKVGPKTAAKWLLEYGSLDALVQSADKIKG-VAGENLRKA 234

Query: 237 AETARLSRKLVMLRTDVPIT------IPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            +     R+L+ ++TD  +         L  L L   +G RL +F +   F  L   +  
Sbjct: 235 LDWLPTGRQLLTIKTDCELDSWVDGLPALHALALGTPDGERLRAFYELYGFKGLARALGD 294

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                 A   PVV                      +        +D ++   +E    + 
Sbjct: 295 ------AAPAPVV---------------------AMPGESGDLFADHSASPVAEAAQHRT 327

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
            +               Y  I+N  D  +W ++L T    +    T ++D   ++ + I+
Sbjct: 328 VV---------------YDTILNWADFDRWRERLLTAELVALDTETTSLDEMRAEIVGIS 372

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S    +          +I L+ HT  D+  +     E+L+ LK + E+  + K+G ++K
Sbjct: 373 FSVQPGE--------AAYIPLA-HTGPDAP-EQLPLGEVLARLKPWLEDARYPKLGQHVK 422

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKS 526
           YD+ V   + I +RG+  D ML SYVL+  +  H +AS+A++       + +++      
Sbjct: 423 YDRHVFANHDIDVRGYVHDTMLQSYVLEVHK-PHGLASLAERHTGRTGISYEDLCGKGAH 481

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            IP  ++   +   ++ E+S+  L + L L P L  +  L     L+    + + ++E  
Sbjct: 482 QIPFAQVPVDKAAAYSCEDSDQTLDVHLALWPLLQADDKLRFIYELEIASSEALYRIERN 541

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ ID   L Q S E+ + +L LE   Y+++G+ FNLSSPKQLG+I F KL  P   KT 
Sbjct: 542 GVLIDAPTLAQQSHELGQRILQLETEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTA 601

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   T  + LE++   D P+   +LE R L+K+K TY D L      RT RVHT Y+ A
Sbjct: 602 TGARSTDEEVLEKL-AEDYPLPAKLLEHRSLTKLKGTYTDKLAQLALPRTGRVHTHYAQA 660

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRL+S +PNLQNIPI+T  G+++R AF++PP   + SADYSQIELRI+AHI+    
Sbjct: 661 VAVTGRLSSNDPNLQNIPIRTAEGRRVREAFVAPPGCVIASADYSQIELRIMAHISGDHA 720

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F   LD+HR  AAE+FGV +++V+ + RR+AK INF +IYG+S F LA  L I   
Sbjct: 721 LLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMSSFGLAKNLGIETK 780

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            AA YI RYF R+PG+ +Y+++TK   +  GYVET+FGRR++  EINSP    R   ERA
Sbjct: 781 AAAAYIDRYFQRYPGVKQYMDETKAQAKARGYVETVFGRRLYLPEINSPNGPRRAGAERA 840

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+AAD+ + AM++V K L+ HK   KM++Q+HDELVFE+PE E+      I  
Sbjct: 841 AINAPMQGTAADLIKLAMVAVQKELDAHKPGIKMIMQVHDELVFELPEGEVDWLRGHIPR 900

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M +       L+VPL   + V  NW + +
Sbjct: 901 LMAEVAA----LKVPLLAEVGVGANWDKAH 926


>gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21]
 gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21]
          Length = 944

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/992 (38%), Positives = 577/992 (58%), Gaps = 64/992 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  + HL+LVDGS++I+RA++  P L+   +G PV A+ G+  MLWKL  +  K    +H
Sbjct: 1   MADKQHLYLVDGSAYIFRAYHRLPPLT-DPEGTPVGAVYGYTTMLWKLADDLDKADGPTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+ D  + +FRNEIY  YKANRP  PE L+PQ PL+R AT+AF +P +E    EADD+
Sbjct: 60  LAVVLDKSSHSFRNEIYGQYKANRPDPPEDLVPQFPLIRDATRAFSLPLVEEPDVEADDM 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP----TTCLYDTVKEEKIDIEHVIKKWGIPP 176
           IA+Y   A+  G+ VTI+S+DKDLMQLV         + DT+K  +I I+ V +K+G+PP
Sbjct: 120 IASYARAAQDAGWNVTIVSSDKDLMQLVGEKDGARIDMLDTMKSARIYIDEVQEKFGVPP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           EK+  + AL GDS+DNIPGI G+G KTA+ L+ E+G+L   L  A  +K+ K +E ++E+
Sbjct: 180 EKVGDVLALMGDSVDNIPGIFGVGPKTASKLIAEHGDLSAALDAAEGMKKSKLKERLIEH 239

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LSR LV L+ D P+ I +  + L+      L +FL+   FT L+ R+      DA
Sbjct: 240 REDAELSRVLVTLKEDCPLPIAINDMKLDGVPSEPLAAFLEKHGFTSLLRRL------DA 293

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P                           ++ + L+    +    +   +  ++ L 
Sbjct: 294 GTGSP---------------------------NRATDLNPPKQQTQGAEASAQGNVQPLP 326

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L +  ++   Y  + +   +++W+ +  +    +    T ++D      + ++++T   
Sbjct: 327 DLPE--VDRAKYECVQSMDRLEEWIARARSARLVAVDTETTSLDCMLCDLVGVSLATGPN 384

Query: 417 KDDTSFKVETIFIDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                   +  +I L    S       +     E L+ LK   E++  LK+  N KYD  
Sbjct: 385 --------QACYIPLGHGGSDMFAEKPQQIGKAEALAALKPLLEDDAVLKVFQNGKYDLN 436

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRS------SHDIASIAQKWLSYT---RKEILKSRK 525
           VL R GI++   +D M++S+ LD+GRS       H +  +A++ L +     KE+  + +
Sbjct: 437 VLAREGIAVAPIDDTMIISFALDAGRSESGIGGGHGMDELAERHLGHPCISFKELCGTGR 496

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +IP  ++   +  E+A E+++V  +L  +L+ +L VE    +YER+D+P++ VV+ ME 
Sbjct: 497 KAIPFAEVPLDKATEYAAEDADVTWRLHAMLKRRLPVEGGTKIYERVDRPLVPVVAGMER 556

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI++D+  L ++S E +     LE  I++++G++F + SPKQLG+ILF KL F  G K 
Sbjct: 557 HGIKVDRARLAKLSEEFATETKRLEGEIHEIAGQEFTVGSPKQLGEILFDKLGFKGGKKG 616

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           K+GQ+ T    LE+++     I   +LEWRQL+K+KSTY D+L   IN R+ RVHT YSL
Sbjct: 617 KSGQYSTDQSVLEKLSGDGAEIAAKVLEWRQLAKLKSTYTDALQEAINPRSGRVHTSYSL 676

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
               TGRL+S +PNLQNIPI+T++G++IR AF++     L++ADYSQIELR+ AH+A + 
Sbjct: 677 VGAQTGRLSSTDPNLQNIPIRTEIGRQIRDAFVAEEGNVLLAADYSQIELRLAAHMADVA 736

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           PL + F    DIH   A E+FG    +V+   R  AKTINF+I+YGIS + LA +L +  
Sbjct: 737 PLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGISRWGLAGRLGVEA 792

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA   I  YF RFPGI +YI  T  +VR+ GY ET+FGR+  +  INS   + R  +ER
Sbjct: 793 DEAQAMIDTYFKRFPGIQKYILHTLEYVREKGYSETLFGRKTWFPRINSKNQAERQGSER 852

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQII 944
           AAINAPIQG++ADI +RAM+ ++ +LE+  L   +MLLQ+HDELVFE+PE ++  AS II
Sbjct: 853 AAINAPIQGTSADIIKRAMVRMNSALEEAGLGHVRMLLQVHDELVFELPEADVAAASAII 912

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              M  A  P + L VPL V I    +W   +
Sbjct: 913 ERVMAGAAQPYVELSVPLGVEIGTGKSWGAAH 944


>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
 gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
          Length = 918

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/990 (34%), Positives = 518/990 (52%), Gaps = 86/990 (8%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  +N L LVDGSS++YRA+YA P L+    G    A+ G  NML  LL   +     
Sbjct: 1   MPKIADNPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYK----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           S  AV+FD    TFRN++Y +YKA RP +P+ L  Q+  +    +A G+P + I G EAD
Sbjct: 56  SQMAVVFDAKGKTFRNDMYSEYKAQRPPMPDDLRTQIEPLHRIIKALGLPLVSISGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T    A KEG AV I + DKD+ QLV     L +T+    +    V +K+G+ PE 
Sbjct: 116 DVIGTIATQASKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPAEVTEKFGVGPEL 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
           ++ L AL GD  DNIPG+PG+G KTA  +L   G ++ IL    ++ +      K     
Sbjct: 176 IIDLLALQGDKADNIPGLPGVGEKTALAMLTGVGGVDKILAAPEKMPELGFRGSKTMPAK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           I+E+A+  +LS +L  ++ DV +      L +   +   LI     +             
Sbjct: 236 IIEHADMLKLSYELATIKLDVELEQDWHQLSITPADKDELIKCYGEM------------- 282

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                            E K    E               +  D T+   SE        
Sbjct: 283 -----------------EFKRWLAEV------------LDNKGDTTAATESED------- 306

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                 +        Y  I++ + +  W++KL      +    T +++   +K + I+ +
Sbjct: 307 ---DAPAAKLDIEVEYDTILSLEQLDCWIEKLTAAELIAIDTETTSLNYMEAKLVGISFA 363

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               K      +E  ++D           +      +   L+   E+E+  K+G N+KYD
Sbjct: 364 VEAGK-AAYLPLEHDYVDAP---------EQLDRALVFEKLQPLLEDENLKKVGQNLKYD 413

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
             +    GI++RG   D ML SYV +S  S H++  +A K+L +     +EI       +
Sbjct: 414 ISIFANIGITLRGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQL 473

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587
             ++I       +A E++++ L+L   L  +L    +L  V+  ++ P+++ +S +E  G
Sbjct: 474 TFNQIPLETAAPYAAEDADITLRLHQHLWSRLEKLPELASVFTDIELPLVNTLSNIERQG 533

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  LL Q S E+++ +  LE   ++++GE FNLSSPKQL  + F KL +P   KT  
Sbjct: 534 VLIDSMLLGQQSEELARKIDELEHKAHEIAGEPFNLSSPKQLQALFFEKLGYPVIKKTPK 593

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G    TA+++      D P+ K ILE R L+K+KSTY D LP  +N +T RVHT Y  A+
Sbjct: 594 GAPS-TAEEVLVELALDYPLPKIILEHRSLAKLKSTYTDKLPLMVNAKTGRVHTSYHQAN 652

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S EPNLQNIPI+T+ G++IR AFI+P  KK+++ADYSQIELRI+AH+++ T L
Sbjct: 653 AATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDTGL 712

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH+  AAE+F V+  +V+   RR AK +NF +IYG+S F LA QL IPR+E
Sbjct: 713 LTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRAE 772

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+ +Y+E+T+      GYV T+FGRR++   I    +  R   ERAA
Sbjct: 773 AQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAA 832

Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMI++ + +E + +    M++Q+HDELVFEV E +  +    +  
Sbjct: 833 INAPMQGTAADIIKKAMINIAQWIETETQGEIIMIMQVHDELVFEVDEAKADSLQAKVCE 892

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M  A      L V L     + +NW++ +
Sbjct: 893 LMAAAA----KLDVELLAEAGIGDNWEQAH 918


>gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491]
 gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491]
          Length = 938

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/993 (34%), Positives = 519/993 (52%), Gaps = 72/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRCTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQISFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQI 943
           P+QG+A+D+ +RAMI V + L + +       L +K+++Q+HDELV EV E E+    + 
Sbjct: 848 PMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVKEK 907

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M K       L VPL   + V  NW+E +
Sbjct: 908 LPQIMAKVDGGL--LDVPLVAEVGVGENWEEAH 938


>gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 921

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 531/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +  N   +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I LE L   + +  +L+     LEF   I  +          
Sbjct: 240 MAFLSYELATIKIDVPLDIELEQLHCSEPDRDKLMELYAELEFKSWIEDLQR-------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                      ++++  Q+L +E     
Sbjct: 292 -------------------------------------------DAKRAGQELVVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVAAKEAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQPH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+ + +K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     ++I      
Sbjct: 415 CAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  A+E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+RN  +R
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQR 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568]
          Length = 937

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/993 (34%), Positives = 524/993 (52%), Gaps = 73/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A   L+   DG P  A+ G  NML +L    R + +  +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMAQLT-APDGAPTGAMYGVLNMLRRL----RADYVHDY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+E++ DYKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 56  CAVVFDAKGKNFRHEMFSDYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 116 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +A+ IK  K  EN+       
Sbjct: 176 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHAAEIKG-KVGENLQAALPQL 234

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 235 PLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 284

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 285 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 323

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 324 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 379

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK   EN    KIG N+KYD+ V 
Sbjct: 380 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVF 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 430 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 488

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++   K L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 489 VAIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 547

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 548 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 607

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 608 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 666

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 667 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 726

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 727 FQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKN 786

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      G+VET+FGRR++  +I++  ++ R   ERAAINA
Sbjct: 787 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAINA 846

Query: 891 PIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQI 943
           P+QG+A+D+ +RAMI V + L + +       L +K+++Q+HDELV EV E E+    + 
Sbjct: 847 PMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVKEK 906

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M K       L VPL   + V  NW+E +
Sbjct: 907 LPQIMAKVGGGL--LDVPLVAEVGVGENWEEAH 937


>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
 gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
          Length = 923

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/977 (35%), Positives = 546/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  EG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG LENI+ NA ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLENIIANADQLKG-KISQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + +++  +  V 
Sbjct: 236 QLASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSTYKQQVS 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            +   +        E+     I+T   +SL+ Q  ++ +                     
Sbjct: 296 QVVVQD--------EVKPADAIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q +Q+++     +    T ++D   ++ +  +I+   Q        
Sbjct: 329 ---YHTVLTQEAWDQLLQRMQNADHFAIDTETTSLDYRIAEMVGFSIAFDAQ-------- 377

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++ L+ +   ++  +    ++IL+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 378 DAYYVPLAHNY--ENAPQQLDREQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFE  +      S+ I   ME      + + 
Sbjct: 853 IKIAMIEVDKILPKDQ--AKLLLQVHDELVFEADQNIAEELSKQIAKVMESV----VEIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGKNWDDAH 923


>gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 924

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/980 (39%), Positives = 588/980 (60%), Gaps = 71/980 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI---A 58
           +K +H +L+DGS +I+RA+YA P L+RK DGLPV A++GFC+ML+KLL++S+        
Sbjct: 5   KKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCSMLFKLLEDSKSNENLQKP 64

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +HFAVIFD    TFRNEIY DYKANR + P+ L PQ   +R +  AF +P++++  +EAD
Sbjct: 65  THFAVIFDAARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVVAFNLPSVDLPNYEAD 124

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IATY      +G  VTI+S+DKDLMQL      ++D +K + I  E ++ K+G+ PEK
Sbjct: 125 DLIATYVEQILAKGAKVTIVSSDKDLMQLYRKDVRIFDPMKNKFITPEDIVTKFGVGPEK 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +Q+L GDS DN+PG+PGIG KTAA L+ +YG LE +L NA  IKQ KRRE ++E  +
Sbjct: 185 VIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLDNAQEIKQNKRRETLIENKD 244

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +S+KLV L  D P+   LE   L+  +  +L  FL+ +EF +L++ V + Y      
Sbjct: 245 KAIISKKLVTLMKDAPVERKLEEFHLKKIDKNKLYKFLREMEFNRLLSSVISAYG----- 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                        E   ++   E   + 
Sbjct: 300 ---------------------------------------------EPLLEETAKETKPEK 314

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+  +Y  I N K+I +W+ + E  G  +    T ++DA  +  + I++ST     
Sbjct: 315 KHQNISKKNYHLITNEKEIDEWINEAEEAGELAIDTETSSLDAHQTDLVGISLSTKIG-- 372

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 +  +I +               + ++  LK   E++   KIG NIK+D +VL++
Sbjct: 373 ------QACYIPIGHKFKG-----CLKKETVIKKLKPLLEDKSVKKIGQNIKFDFIVLYK 421

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
            GI+M   ED MLMSYVLD+G++ H++ ++++  L +     KEI+ + K  I    +  
Sbjct: 422 QGINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQHKTISFKEIVGTGKKEINFSDVEL 481

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +  E+A E++++  +L+ +    L +EKL ++YE  +KP+I +++ MEI GI+ID   L
Sbjct: 482 DKAMEYAAEDADITYRLYKIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFL 541

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K +S +  K +  LE+ ++ +S ++FN++SPKQLG+I++  LK     KT+ G + T A 
Sbjct: 542 KVLSEKFEKKISKLEKEVFKISKKEFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNAS 601

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +    +   K IL+WRQ+SK+K+TY+D+LP HIN  T+RVHT + LA+T TGRLAS
Sbjct: 602 VLEDLAFKGHEFPKLILDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLAS 661

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPIK++ G+ IR+AFI+     LISADY+QIE+RILA +A++  L + F N+ 
Sbjct: 662 SDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNE 721

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + A+++F V+I+KV   MRR AK INF IIYGIS + LA Q+ +   EA +++  Y
Sbjct: 722 DIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNAY 781

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F +FP I  Y++ T  F R++GYV  IFGRR H++ IN    ++RN  ERAAINAPIQGS
Sbjct: 782 FLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQGS 841

Query: 896 AADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           A++I R AMI ++K  E      +K+LLQIHDEL+FEVP +E+   ++II   M      
Sbjct: 842 ASEIMRLAMIRLNKKFESIKNNKSKILLQIHDELIFEVPVKEVKNITEIIKDEMTSVTES 901

Query: 955 KI-NLRVPLKVNIKVSNNWQ 973
            +     PL V++   +NW 
Sbjct: 902 DLHTFSTPLTVDVNTGDNWG 921


>gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 925

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 531/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 9   PLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 64  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 124 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 183

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +  N   +        K     + E+  
Sbjct: 184 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIRGAKTLAAKLEEHRA 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I LE L   + +  +L+     LEF   I  +          
Sbjct: 244 MAFLSYELATIKIDVPLDIELEQLHCSEPDRDKLMELYAELEFKSWIEDLQR-------- 295

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                      ++++  Q+L +E     
Sbjct: 296 -------------------------------------------DAKRAGQELVVEE---- 308

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 309 PTVAAKEAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQPH-E 367

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+ + +K+G + K+   +L  
Sbjct: 368 AAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINLLAN 418

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     ++I      
Sbjct: 419 CAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAK 478

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 479 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEMPLVPVLARIER 538

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 539 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 598

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 599 ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 658

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK  
Sbjct: 659 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDE 718

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  A+E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 719 GLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 778

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+RN  +R
Sbjct: 779 KQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQR 838

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 839 MAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISEQIR 898

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 899 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 925


>gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 921

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/991 (34%), Positives = 532/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +  N   +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +          
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCSEPDRDKLMELYAELEFKSWIEDLQR-------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                      ++++  Q+L +E     
Sbjct: 292 -------------------------------------------DAKRAGQELVVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+  +    W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVAAKEAAYEVILEQEQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+ + +K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     ++I      
Sbjct: 415 CAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  A+E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+RN  +R
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQR 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 921

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/991 (34%), Positives = 529/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +  N  ++        K     + E+ E
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLDKVATLPIRGAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +   L+     LEF   I  +          
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDALMELYAELEFKSWIEDLQR-------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                      ++++  Q+L +E     
Sbjct: 292 -------------------------------------------DAKRAGQELTVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVEAKEAAYEVILEQTQFDAWLKKLQATPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +DS         +L  LK   E+   +K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDS---------VLKTLKPLLEDPGKIKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     ++I      
Sbjct: 415 CAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELEGVTQDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L+   L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + + NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGIGNNWDEAH 921


>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
 gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
          Length = 930

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/986 (35%), Positives = 535/986 (54%), Gaps = 71/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRAFYA   LS   DG P NA+ G  NML +L    R E+   +
Sbjct: 6   MTTK-TLLLVDGSSYLYRAFYAMTHLS-APDGTPTNAVYGVLNMLRRL----RAETPHDY 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD     FR+ ++PDYKA RP +P+ L PQ  ++    +  G   ++I   EADD+
Sbjct: 60  CACVFDAKGKNFRHALFPDYKATRPPMPDDLRPQADMLPDLVELMGWKVLKISDVEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    AE     V I + DKD+ QLVS    L +T+K E +D   V  K+G+ P ++ 
Sbjct: 120 IGTLAKQAESADMNVIISTGDKDMAQLVSERITLVNTMKNETLDEAGVFNKFGVHPNQIR 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTAA  L E+G+L+NI+  A   K  K  EN+       
Sbjct: 180 DFLALMGDKVDNVPGVEKCGEKTAAKWLAEFGSLQNIMNKADEFKG-KIGENLRAALPQL 238

Query: 241 RLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS +LV ++TDV +       ++ L        +L    + L F   +           
Sbjct: 239 PLSYELVTIKTDVDLFSELPNGMDDLRRNAPKWAQLAVHFRELGFKTWLKEAENQLSSQV 298

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           ++      D+ T                              +  ++++ P+ +   + +
Sbjct: 299 SDDLFAADDVGTQ-----------------------------AAFDAQRQPEIILAPKPE 329

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           KLS        Y  ++N   + + ++KL T         T ++D  +++ + I+++    
Sbjct: 330 KLS--------YQAVINQTQLDELLRKLSTAEQIGLDTETTSLDPMNARLVGISMAFAAG 381

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I ++   ++    +    + +L  LK + E++  LKIG N+KYD+ V 
Sbjct: 382 E--------AVYIPINHTFAE----QQLSWETLLGSLKPYLESKTLLKIGQNLKYDQHVF 429

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             +GI ++G   D ML SYVL+S    H +  +AQ+WL     T + +       I    
Sbjct: 430 ANHGIQLQGIAGDAMLASYVLESHLG-HGLDELAQRWLGLETITYESLCGKGAKQISFAD 488

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +S  Q  E+A ++++  L++   L+ ++  ++   +YE ++ P+  V+  ME  G+ ID+
Sbjct: 489 VSVEQATEYACQDADFALRIEAHLKAQM-SDEQRKMYEEMELPVAQVLFHMERNGVLIDR 547

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L Q SAE+   LL LE+  YDL+G+ FNL+SPKQL +ILFTKL  P+    KT TG  
Sbjct: 548 AELAQQSAELGAELLKLEQQAYDLAGQPFNLNSPKQLQEILFTKLGIPTKGLKKTSTGSI 607

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  IN  T R+HT Y+ A  +T
Sbjct: 608 STNEAVLEQL-AMDYPLPKIILQNRSLAKLKSTYTDKLPEMINPNTHRIHTNYAQAVAIT 666

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAFI+P    ++SADYSQIELRI+AH++    L + 
Sbjct: 667 GRLASNNPNLQNIPIRTSEGRRVRRAFIAPENSVIVSADYSQIELRIMAHLSGDATLIEA 726

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG+  E ++P+ RR+AKTINF +IYG+S + LA  L I  + A  
Sbjct: 727 FKNGEDVHRRTAAEVFGMQPENITPEQRRYAKTINFGLIYGMSSYGLAKSLGIDNASADM 786

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +IKRYF R+ G+ +Y+++TK      GYVET+FGRR++  +I++  +  R   ERAAINA
Sbjct: 787 FIKRYFARYTGVADYMQRTKEQAADLGYVETLFGRRLYLPDIHAKNAQARAGAERAAINA 846

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI+V   L    L T++ +Q+HDELV EVP+ E     Q I   M  
Sbjct: 847 PMQGTASDLIKRAMIAVDDFLLSGSLKTRLTMQVHDELVLEVPKSEQERIVQNIPALMAS 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + +  NW + +
Sbjct: 907 VGKGV--LDVPLVAEVGIGKNWDDAH 930


>gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 921

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/991 (34%), Positives = 532/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +  N   +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +          
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCSEPDRDKLMELYAELEFKSWIEDLQR-------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                      ++++  Q+L +E     
Sbjct: 292 -------------------------------------------DAKRAGQELVVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+  +    W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVAAKEAAYEVILEQEQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+ + +K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     ++I      
Sbjct: 415 CAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  A+E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+RN  +R
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQR 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1]
 gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1]
          Length = 913

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/983 (36%), Positives = 539/983 (54%), Gaps = 86/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ Y DYKANRP +P+ L  Q+  + +A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  AEK G  V + + DKDL QLVS    L +T+  EK+D   V+ K+G+PPE+++  
Sbjct: 123 TLSTEAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L ++ +L+ I+ +A  IK     +N+    +   +
Sbjct: 183 LSLVGDTVDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGA-VGDNLRRALDFLPM 241

Query: 243 SRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           ++KLV +  +  +T  +    E L  +  +   L        F                 
Sbjct: 242 AKKLVTVERNCDLTDHIVSIEESLQSQPESRAELREVFTRHGF----------------- 284

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                        K    E EI              +D      ++  P           
Sbjct: 285 -------------KTWLREVEI--------------ADAVEGPETDVPPALSVD------ 311

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +   Y  +   +    W++ +      SF   T ++D   ++ + +++S    + 
Sbjct: 312 -----HERHYDTVQTWEQFDAWLETINAAELTSFDTETTSLDPMIAQIVGLSLSVEAGR- 365

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L+ H   D+        E+L+ LK + E+    K+G ++KYD+ VL  
Sbjct: 366 -------AAYVPLA-HRGPDAPV-QLPRDEVLARLKPWLESVEHKKVGQHLKYDEQVLAN 416

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI MRG   D +L SYV++S R+ HD+ S+A + L       +E+       I  D+++
Sbjct: 417 YGIEMRGIEHDTLLQSYVVESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVA 475

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L  +L P++  EK L +VY  ++ P   V+ +ME TG+ ID +
Sbjct: 476 LDKAAEYAAEDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSE 535

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+Q S+EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 536 KLRQQSSEIATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTD 595

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 596 EEVLQKL-AEDFPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRL 654

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+PP  KL+SADYSQIELRI+AHI+    L + F  
Sbjct: 655 ASNDPNLQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQ 714

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 775 RYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V K +E+ K+ T+M++Q+HDEL+ EVP+ E++   + +   M     
Sbjct: 835 GTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVA- 893

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
              +L+VPL   +    NW+E +
Sbjct: 894 ---DLKVPLVAEVGAGLNWEEAH 913


>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58]
 gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58]
          Length = 938

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/993 (34%), Positives = 518/993 (52%), Gaps = 72/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK    N    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T+ G+K+RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AK+INF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQI 943
           P+QG+A+D+ +RAMI V + L + +       L +K+++Q+HDELV EV E E+    + 
Sbjct: 848 PMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVKEK 907

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M K       L VPL   + V  NW+E +
Sbjct: 908 LPQIMAKVDGGL--LDVPLVAEVGVGENWEEAH 938


>gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
          Length = 927

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/983 (33%), Positives = 528/983 (53%), Gaps = 68/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYR++YA     R    GL  +A+ GFCN L ++L   +     SH  V
Sbjct: 2   DKLFLIDAYALIYRSYYAFINNPRINSKGLNTSAVMGFCNTLNEVLNKEQ----PSHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+  +TFRNE +P YKA R   PE +   +P+++    A+ IP +++ GFEADD+I T
Sbjct: 58  AFDH-GLTFRNEAFPQYKAQREATPEDIKRSVPIIKDILTAYHIPVLQVDGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPE-KM 179
               A ++G    +++ DKD  QLV P   +Y        E +  + V +K+ I    ++
Sbjct: 117 LALKAGEQGIDTYMLTPDKDYAQLVRPNVYMYRPRHGGGYETMGPDEVNQKYNISSPLQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTA+ L+ E+G +E +L N +++K  K RE +    E 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTASKLINEFGTVEKLLENTAQLKG-KMREKVEGAVED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVP+ + LE L L++ +  +L      LEF    NR+    +      
Sbjct: 236 IKMSKFLATIRTDVPLELDLEQLRLKEPDTAKLQEIFTELEFKSFANRLLNKAEKPKKAD 295

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
              +                             SL D+ +   ++ +  +     +    
Sbjct: 296 NRQL-----------------------------SLFDEPAMAEADNSRFEPLSAPVANRQ 326

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  +    DIQ  V  L      S    T + +A  ++ + ++ +  ++K  
Sbjct: 327 TIETTPHEYHLVQTEADIQALVNLLSAADVISLDTETTSTNAIDAQLVGLSFAVEEKK-- 384

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +    ++         + I+   K  +EN + LK+G NIKYD  VL  Y
Sbjct: 385 ------AYYVPVPEQANE--------AQNIVDKFKAIYENPNTLKVGQNIKYDLEVLRNY 430

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRKSSIPIDKIS 534
           GI ++G   D M+  Y+L      H++  +A+ +L+Y        I    K+   + +++
Sbjct: 431 GIMLQGPLFDTMIAHYLLQP-ELRHNMDFMAEVYLNYETVHIDALIGAKGKTQKNMRELA 489

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            S+V  +A E++++ LQL  +L+PKL+   +  ++  ++ P+I V+++ME  G++ID   
Sbjct: 490 PSEVYAYACEDADITLQLKNVLQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAA 549

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           LK+ S   ++ +L LE+ IY  +G+ FN++SPKQ+GDILF ++K      KTKTGQ+  T
Sbjct: 550 LKETSQVFTERMLQLEQEIYQAAGKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQY-VT 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           ++++ Q     +PI+ +IL++R L K+  TY D+LP  IN RT  +HT ++ A T TGRL
Sbjct: 609 SEEVLQTLRSKHPIVAHILDYRALKKLLGTYVDALPKLINPRTGHIHTSFNQAVTATGRL 668

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++ + G++IR+ FI     +  SADYSQIELR++AH+++   +   F  
Sbjct: 669 SSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLDAFRE 728

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+   + +V+   R  AK  NF IIYGI+ F LA +L I R+EA   I 
Sbjct: 729 GYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGIIYGITVFGLADRLNIERAEAKQLID 788

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP + +Y+E+ K   + NGYVET F RR +  +INS  +++R I ER AINAPIQ
Sbjct: 789 GYFKMFPQVRDYMEQAKETAKANGYVETFFHRRRYLPDINSSNATVRGIAERNAINAPIQ 848

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ + +  +   + +KM+LQ+HDEL F V   E     +I++  M+ A  
Sbjct: 849 GSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNFSVLPTEKELVERIVMEEMQAA-- 906

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL  +    NNW E +
Sbjct: 907 --YPLDVPLVADGGWGNNWLEAH 927


>gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902]
          Length = 930

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/986 (34%), Positives = 515/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKG-KVGENLRAALPRL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRRTAPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDVFGSDSIGEQAALNAEMPSEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPERLDYQAVTTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK    N    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  + + FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 907 VDGGL--LDVPLVAEVGVGENWEEAH 930


>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
 gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
          Length = 898

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/974 (36%), Positives = 541/974 (55%), Gaps = 86/974 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +    LVDG+S++YRAF+A P L     G P  AI G  +ML KL++ +  E    +  V
Sbjct: 2   KKPFILVDGTSYLYRAFHALPPLMNSK-GEPTGAIYGVISMLRKLMKENDPE----YIVV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR  +Y +YKA+RP +P+ L  Q+  +    +  G+P +   G EADD+I T
Sbjct: 57  VFDAKGKTFREALYSEYKAHRPLMPDDLQVQIEPLYALIRGLGLPLVIHSGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +    V I + DKD  QLV     L +T+   ++D + VI K+G+ PE++    
Sbjct: 117 LATKALQHLRPVLISTGDKDFAQLVCEEITLVNTMTNTRLDRQGVIDKFGVAPEQITDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           +L GD +DN+PG+P +G KTAA  L  YGNLE+++ NAS IK  K  +N+    +   LS
Sbjct: 177 SLIGDPVDNVPGVPNVGPKTAAKWLNHYGNLESLIKNASAIKG-KVGDNLRASRDKLLLS 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV ++TDV ++  LE    +  +   L ++ K L                        
Sbjct: 236 RQLVTIKTDVDLSFDLEKFRPQAPHHSVLSAYYKKL------------------------ 271

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                 E KG   + E                +  S  ++  TP  +             
Sbjct: 272 ------EFKGWLRDLE---------------KNLASPDSTIHTPPPV------------- 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
             ++Y+ I++ +    ++++L      SF   T +++   ++ + ++ +   +K      
Sbjct: 298 --NAYSLILDEQSFHVFLKQLTQANGWSFDTETTSLNVMQAELVGLSFAIGGEK------ 349

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              ++I L+ H   D+  +    + +L  LK  FE+   +KIGH++KYD  +L  YGI +
Sbjct: 350 --PVYIPLA-HDYPDAP-QQLNRQWVLQQLKPLFEDPKQIKIGHHLKYDMNILAHYGIQL 405

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539
           RG + D ML SY+LDS  + H + S A K L +     +EI          ++I+     
Sbjct: 406 RGIDFDTMLESYLLDSASNQHSLDSAALKHLDHKTIRFEEIAGKGAKQKTFNQINLQDAG 465

Query: 540 EHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E++ + L+L   L+P+L  V  L  VY  ++ P++ V+++ME  G+ ID  LLK+ 
Sbjct: 466 PYAAEDAAIALRLHETLKPQLDNVVGLSTVYTEIEMPLVTVLARMERHGVLIDAPLLKKQ 525

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S  I+K LL+LE+  + L+G+ FNL SPKQL  ILF     P   KT  GQ   T++++ 
Sbjct: 526 SRSIAKRLLTLEQQAFQLAGKPFNLGSPKQLQTILFDDHGLPILEKTPKGQAS-TSENVL 584

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q      P+ K IL+ R+LSK+KSTY D LP  IN +T RVHT Y  A+ +TGRL+S +P
Sbjct: 585 QALALTFPLPKIILKHRRLSKLKSTYTDKLPEQINPKTGRVHTSYHQAAVVTGRLSSSDP 644

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP +T  G+KIR+AFI+PP   +++ADYSQIELRI+AH ++   L + F   LDIH
Sbjct: 645 NLQNIPARTHEGRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGLLKAFAQGLDIH 704

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           +  AAE+  + +E+V+ + RR AK INF ++YG+S F LA QL I R +A +YI+RYF R
Sbjct: 705 QATAAEVLNIPLERVTHEQRRSAKAINFGLMYGMSAFGLARQLGISREDAKNYIERYFDR 764

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+E+ +    +  YV T+FGRR++   INS  S  R  +ERAAINAP+QGSAAD
Sbjct: 765 YPGVKRYMERIRQRAHEQRYVTTLFGRRLNLAFINSNDSLQRRASERAAINAPLQGSAAD 824

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AMI +   L   KL   M++Q+HDELVFE+ E ++  A ++I + M    +    L
Sbjct: 825 IIKKAMIRIDAELIKKKLDAHMIMQVHDELVFEIAEHDLQRAKRLIENLM----VHTTTL 880

Query: 959 RVPLKVNIKVSNNW 972
            VPL V+I++ +NW
Sbjct: 881 SVPLVVDIQIGSNW 894


>gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 923

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/977 (35%), Positives = 544/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  EG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLKG-KLSQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +    
Sbjct: 236 QLASIVCDLPLELDWHELKLTDPNVEALRNLYTELEFRNQLQSLDHPNNPNSSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ E+    +I+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTIVQNEVKPAESIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+  D KD     +
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF-DAKDAYYVPL 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         ++  +     +IL+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 385 AHNY---------ENAPQQLDRDQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDEALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFE  +      S+ I   ME      + + 
Sbjct: 853 IKLAMIEVDKILPKDQ--AKLLLQVHDELVFEADQNIADELSKQIATVMESV----VKIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGQNWDDAH 923


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/984 (35%), Positives = 536/984 (54%), Gaps = 66/984 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+D  + I+R +YA     R    G+  +AI GF N L ++++  +        AV
Sbjct: 2   KKLFLLDAYALIFRGYYAFIKNPRINSKGMNTSAIVGFMNSLLEVIRKEQPHL----LAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD      R+ ++P+YKANR + PE +   +P +     A  IP IE +G+EADDII T
Sbjct: 58  CFDKGGSQERSALFPEYKANREETPEAIRFAIPYIHQILHAMQIPVIEKEGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
               AEK+G+ V +++ DKD  QLVSP   +Y   +     E   +E V + + +  PE+
Sbjct: 118 LAKQAEKQGYTVYMVTPDKDYGQLVSPNIFMYKPARGGKDTEIWGVEEVKENFQVENPEQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L  + GD++DNIPG+PG+G KTA  LL+E+G+LEN+L N  ++K  K RENI    +
Sbjct: 178 VIDLLGMMGDAVDNIPGLPGVGEKTAQKLLKEFGSLENLLDNTDKLKG-KLRENIEANKD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS+ L  +  DVP+T   +   L       +    + LEF  ++  +   ++    +
Sbjct: 237 KGILSKTLARIILDVPVTFDEKDFELSSPKMAEIEPLFEELEFRTMLTTLQKAFNVAPIS 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +P +                             SL+ Q S I    TP    L   +KL
Sbjct: 297 TQPDLF----------------------------SLAGQPSPIAGTATPSLFDLAPSKKL 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +    +++  + +L       F   T ++D   ++ + +A S    K 
Sbjct: 329 QTIKDVPHEYQLLTTQDEVKALLPELLKQKEVCFDTETTSLDEMEAQIVGLAFSWEVHKG 388

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                                    +L KE LS LK FFE E+ LKIG N+KYD  +L  
Sbjct: 389 YYIL----------------FPEDFSLAKEWLSLLKPFFEAENILKIGQNLKYDLKILAN 432

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKI 533
           Y I +RG   D M+  Y+L+     H++  +A+ +LSY    I     K  K  + +  +
Sbjct: 433 YDIEVRGQLFDTMIAHYLLNPDM-RHNMDLLAEAYLSYAPVAIETLIGKKGKGQLSMCSV 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                +E+A+E+++V LQL     P L  +K+  ++  ++ P++ V++QME  GI +D  
Sbjct: 492 PAELQKEYAVEDTDVTLQLKHTFLPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTA 551

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L Q+S EI+ +L++L+  I++ +GE FNLSSPKQLGDILF KLK  S  K        T
Sbjct: 552 FLSQLSKEINTDLIALQTAIFEQAGESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYAT 611

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           ++++       +PI+ N+LE+R L K++STY D+LP  +N RT R+HT +  A T TGRL
Sbjct: 612 SEEVLSELASQHPIVANVLEFRALQKLQSTYTDALPREVNPRTGRIHTTFMQAVTATGRL 671

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+T  G +IR+AF+       L+SADYSQIELRI+A +++ T + + F 
Sbjct: 672 SSNQPNLQNIPIRTPRGSQIRKAFVPRDENYTLLSADYSQIELRIIAALSEETHMIEAFL 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIHR  AA++FGV +E V+ + R HAKT+NF IIYG+S   L+ Q  + RS++ + I
Sbjct: 732 DGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSAIGLSQQTSLSRSQSKELI 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             Y+  +P +  YIE+   F R++GYV+T+ GRR +  +I+S    +R   ER A+NAPI
Sbjct: 792 DTYYQTYPKLKTYIEQQIFFAREHGYVQTLLGRRRYLPDIHSRNQVVRGAAERNAVNAPI 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM+ + + LE  KLAT+MLLQ+HDEL+F+VP+ E+   + +I   M  A 
Sbjct: 852 QGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDELLFDVPKRELEVVTPLIREEMGHAY 911

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V I   NNW E +
Sbjct: 912 A----LSVPLIVEIGTGNNWLEAH 931


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/984 (40%), Positives = 551/984 (55%), Gaps = 77/984 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDGS FI+RAF+A P ++R  DG PVNA+ GFCNML +LL    KE   +H
Sbjct: 1   MTR--RLVLVDGSGFIFRAFHALPPMTRD-DGTPVNAVFGFCNMLARLL----KEHTGTH 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD    TFRNEI P YKA+RP+ PE L+PQ  LVR AT+AF +PAIE+ G EADD+
Sbjct: 54  LAVIFDAGRTTFRNEIDPRYKAHRPEPPEELVPQFVLVREATRAFAVPAIELDGVEADDL 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+Y    +K G    IIS+DKDLMQL+     + D +K   I  + V+ K+G+ PE+MV
Sbjct: 114 IASYAEEMKKAGGEAVIISSDKDLMQLLDAHVSMLDPIKSTPIGPDEVVAKYGVTPEQMV 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAE 238
             QAL GDS+DN+PG+PGIG K AA L+ E+G+LE+IL  A+   +K  KRRE+++ YAE
Sbjct: 174 DAQALMGDSVDNVPGVPGIGPKGAAQLIAEFGDLESILAAAASGTMKPSKRRESLVAYAE 233

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            AR+SR+LV LR DVP+ +P++ L +   +   L  FL A  F  +  R+          
Sbjct: 234 EARISRRLVELRRDVPLPVPIDELAIAPLHDGMLNDFLDAQGFKSIKARLGL-------- 285

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE--QTPQKLFLERLQ 356
                                                D  +K N E              
Sbjct: 286 -------------------------------------DGVAKRNGERLAEAAGAADAPAP 308

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I +  ++ +W+ ++   G  +    T  ++  H+K + I+++T   
Sbjct: 309 AAPAADAPFGPYVTIDSEAELDRWIAEIRHAGRFAIDTETTGLNPRHAKLVGISVATAPG 368

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++ L         G        L  L     +   LKI HN K+D  VL
Sbjct: 369 R--------AAYVPLGHED-----GPQLPRPLALERLAPVLADPSILKIFHNAKFDLHVL 415

Query: 477 HRYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            R G+      +D MLMSY L +GR  H +  ++   L +      E+  + +S +    
Sbjct: 416 ERAGLADATPVDDTMLMSYTLGAGRHGHGMDELSALHLDHRPISYDEVTGTGRSRVSFAA 475

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   +   +A E+++V L+LWLLLRP+L  E  L +YE +++ ++ V+  ME  GI +D+
Sbjct: 476 VPIDRATAYAAEDADVTLRLWLLLRPRLRTEAALALYETMERRLLSVLLGMERAGIMVDR 535

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L+ +SAE ++ +  ++  I  L+G  FN  SPKQLG+ILF ++  P G +TKTG W T
Sbjct: 536 ADLESMSAEFARRMDDIQREIEKLAGRAFNPGSPKQLGEILFDEMGLPGGKRTKTGAWGT 595

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A  LE++    + +   +LEWRQL K+KSTYAD+L   I+   QRVHT +S A T TGR
Sbjct: 596 DATVLEELAASGHDLPVRVLEWRQLQKLKSTYADALVGEIDIADQRVHTSFSQAITTTGR 655

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+T  G +IRRAFI+ P K LISADYSQIELR+LAH+A I  L + F 
Sbjct: 656 LSSNEPNLQNIPIRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFA 715

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AAE+FG+ +E + P +RR AK INF IIYGIS F LA QL I  SEA  +I
Sbjct: 716 KGEDIHARTAAEVFGLPMEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFI 775

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+P I  Y+ +T  F R +GYV T FGRR +   I     + R   ER AINAP+
Sbjct: 776 DAYFARYPEIRRYMNETAEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPL 835

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG AADI +RAM+ +  ++ D  L   MLLQ+HDELVFE P+++    +++    M+ A 
Sbjct: 836 QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHDELVFEAPKDQAEATAKLACAVMQGAA 895

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L VPL V   +  NW + +
Sbjct: 896 ----SLSVPLLVETGIGANWSDAH 915


>gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
 gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13]
 gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40]
 gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
          Length = 921

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 530/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +  N   +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I LE L   + +  +L+     LEF   I  +          
Sbjct: 240 MAFLSYELATIKIDVPLDIELEQLHCSEPDRDKLMELYAELEFKSWIEDLQR-------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                      ++++  Q+L +E     
Sbjct: 292 -------------------------------------------DAKRAGQELVVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVAAKEAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQPH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+ + +K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     ++I      
Sbjct: 415 CAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+AK  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  A+E+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+RN  +R
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQR 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S  I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISGQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
 gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
          Length = 923

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/977 (35%), Positives = 543/977 (55%), Gaps = 60/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RA++A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAYHALPPLTT-STGLHTNAIRGAISAIQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  EG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G+ P +++    
Sbjct: 117 AKRAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K  K  +NI +  +  +L  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLKG-KLSQNIKDNLDNIKLDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L D N   L +    LEF   +  +    + ++++ +    
Sbjct: 236 QLASIVCDLPLELDWHELKLTDPNVEALRNLYTELEFRNQLQSLDHPNNPNSSSYKQ--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                +     ++ E+    +I+T   +SL+ Q  ++ +                     
Sbjct: 293 -----QASQTVVQNEVKPAESIETEDQASLTSQDDQLGTAN------------------- 328

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+  D KD     +
Sbjct: 329 ---YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF-DAKDAYYVPL 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         ++  +     +IL  +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 385 AHNY---------ENAPQQLDRDQILVQIKPVLENEAVKKIGHHLKYDAHIFANHGIELK 435

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 436 GWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH 495

Query: 541 HAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI++D   L ++S
Sbjct: 496 YAAEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLS 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE    +++ E FN++SPKQ+G+ILF KL    G KT TGQ+ T+   LE+
Sbjct: 556 VEFAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 616 I---EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F++  D+HR
Sbjct: 673 LQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHR 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+ +YIK+YF R+
Sbjct: 733 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 793 PGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V K L   +   K+LLQ+HDELVFE  +      S+ I   ME      + + 
Sbjct: 853 IKLAMIEVDKILPKDQ--AKLLLQVHDELVFEADQNIAEELSKQIATVMESV----VKIS 906

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW + +
Sbjct: 907 VPLVVEVGQGQNWDDAH 923


>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
 gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
          Length = 928

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/982 (38%), Positives = 564/982 (57%), Gaps = 60/982 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +NHL+LVDGS +I+RA++  P L+ +H G PV A+ G+  MLWKL +   K    +H
Sbjct: 1   MT-QNHLYLVDGSGYIFRAYHQLPPLTNRH-GQPVGAVYGYTTMLWKLAEELGKAEGPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVI D  + TFRN++Y  YKANRP  PE L+PQ P++R AT+AF +P IE  G+EADDI
Sbjct: 59  LAVILDKGSHTFRNDMYDQYKANRPPAPEDLVPQFPMIRDATRAFSLPCIEEDGYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+YT  A   G+ VTI+S+DKDLMQL+ P   +YDT+K E+   ++V+ K+G+ PE++ 
Sbjct: 119 IASYTRAAVAAGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMGKFGVQPEQLG 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GDS+DN+PGIPGIG KTAA L+ EYG LE  L  A  +K+ K +EN++ +A+ A
Sbjct: 179 DVLALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALDAAPSMKKSKMQENLIAHADMA 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           RLSR+LV L   + +  PLE L L+      L +FL+   F  L+NR+       A    
Sbjct: 239 RLSRRLVALHDAMDLPEPLEELTLKGIPPEPLQTFLEHHGFKTLLNRLGAPAAAVAVAAA 298

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                                           +          +
Sbjct: 299 AAAATD------------------------------------------EAAPPPPAFADE 316

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I+   Y  +V    + +W+   +  G  +    TD +D      + I+++        
Sbjct: 317 PAIDRSLYETVVTQDALDRWIAAAQAEGVVAVDTETDMLDCVSCGLVGISLAVAPN-AAC 375

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              V     D+                 +L+ LK   E++  LK+G N+KYD  VL R+G
Sbjct: 376 YIPVGHGGTDMFAER-----PAQLDKALVLAKLKPLLEDDAVLKVGQNLKYDMTVLRRHG 430

Query: 481 ISMRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
           I +  ++D ++MS+ L++G+S   H +   A++ L +     K+++ + K+ I   ++  
Sbjct: 431 IEVVPYDDTIVMSFDLEAGKSLSGHGMDEAARQHLGHECISFKDVVGTGKNQISFAEVPL 490

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +  E+A E+++V L+LW   + ++  E    VYE +D+P++ V+++ME  GI++D++ L
Sbjct: 491 PRATEYAAEDADVTLRLWKRFKARIANEGTNRVYELVDRPLVGVIAKMEHQGIKVDREAL 550

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++SAE +  + +LE  I++++G+ F + S +QLG ILF K+ +  G K K+G + T   
Sbjct: 551 SRLSAEFTAGIAALETEIHEIAGQPFAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVT 610

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LEQ+     PI   +LEWRQLSK+KSTY D+L   INK + RVHT YSL    TGRL+S
Sbjct: 611 ILEQLKAQGAPIAAKVLEWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLTGAQTGRLSS 670

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T++G++IR AF++ P   +++ADYSQIELR+ AH+A +  L + F    
Sbjct: 671 TDPNLQNIPIRTEVGRQIRHAFVAEPGHVILAADYSQIELRLAAHMADVPALKEAFAAGE 730

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A ++FG    +V+ + R  AKTINF+I+YGIS + LA +L I   EA D I RY
Sbjct: 731 DIHAATAEQLFG----EVNRETRGRAKTINFAILYGISRWGLAGRLEISADEAQDMISRY 786

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           + RFPGI  YI +T    R+ GY ET+FGR+  +  I +     R   ERAAINAPIQG+
Sbjct: 787 YERFPGISIYINETIEKARERGYTETLFGRKTWFPRIKASIQHERQGAERAAINAPIQGT 846

Query: 896 AADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +ADI +RAM+ +  +LE   L   +MLLQ+HDELVFEVPE ++  AS ++   ME A  P
Sbjct: 847 SADIIKRAMVRMGPALEAAGLSGVRMLLQVHDELVFEVPEGDVDAASAVVRRVMETAAEP 906

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            + L VPL V I    +W   +
Sbjct: 907 IVTLSVPLGVEIGTGPSWGAAH 928


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/989 (33%), Positives = 544/989 (55%), Gaps = 58/989 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++  LFL+D  + I+R +YA     R    G+  +AI GF N L+ +++  + +    
Sbjct: 1   MAEQKRLFLLDAFALIFRGYYALIKNPRINSKGMDTSAIMGFTNSLFDVIKREKPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R E++P+YKANR + P+ +   +P ++   +A  IP +  +G+EADD
Sbjct: 57  HLAVCFDKGGSVERTEMFPEYKANRLETPDAIKIAVPFIQEILKAMHIPVVVQEGWEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T    AEKE + V +++ DKD  QLVS    +Y   +     E   I  + K++G+ 
Sbjct: 117 IIGTLAKQAEKEDYKVYMVTPDKDFGQLVSENIFMYRPARMGNGIEIWGIPEIQKRFGVE 176

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++    + GD+ DNIPG+PG+G KTA   + EYG++E +L N  ++K  K +E + 
Sbjct: 177 RPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFINEYGSMEGLLANTDKLKG-KMKEKVE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  E   LS+KL  + T V +    +   +   +  ++      LEF +L ++    +  
Sbjct: 236 ENGELGILSKKLATICTTVDVQFDAKDYEMSVPDNEKVQEIFNELEFRRLKDQFVKIFSE 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D         + N   N+  A++  +      + S F S  +  +             + 
Sbjct: 296 DKN-------ENNAQSNETPAVKKVVAEAGGGQFSLFGSDGNAPA-----------TFKE 337

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y  + +   ++ ++Q L    S  F   T  ++   ++ + IA S  
Sbjct: 338 SSGRKTIQDIPHVYQSVASGMAMKLFMQNLMKQNSVCFDTETTGLNPLTAELVGIAFSWE 397

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K          +I      +Q         +EI+  L+ FFE+E   KIG N+KYD  
Sbjct: 398 AGKG--------FYIPFPEDKNQ--------AQEIIETLRPFFESEMIEKIGQNLKYDIK 441

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIP 529
           VLH+Y I ++G F D ML  Y+++     H++  +++ +L+Y      + I K  K+ + 
Sbjct: 442 VLHKYNIQVKGKFFDSMLAHYLINPDM-RHNMDVLSETYLNYTPVSITELIGKKGKNQLS 500

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +   +  E+A+E++++  QL    RP+L       ++  ++ P++ V++ ME+ GI 
Sbjct: 501 MRDVPLEKQTEYAVEDADITYQLAQHFRPELAEASTEELFNTIEIPLLHVLADMELEGIN 560

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D++ L  +S +++ ++  L+  IY  + ++FN++SPKQLG+ILF KLK      KTKTG
Sbjct: 561 LDKEFLGSLSEDLNNDIKELQSKIYKEADQEFNIASPKQLGEILFDKLKLVDKPKKTKTG 620

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+  TA+D+      D+ II+N+LE+R LSK+KSTY D+LP  + +RT RVHT Y     
Sbjct: 621 QYS-TAEDVLSYLAKDHEIIRNVLEYRGLSKLKSTYVDALPLQVEERTGRVHTDYMQTVA 679

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A +++   +
Sbjct: 680 ATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDEDYTLLAADYSQIELRIIAALSEEDTM 739

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F+N  DIH   A+++F V +++V+ + R +AKT+NF IIYG+S F L+ Q  + R+E
Sbjct: 740 IEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRTE 799

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I+ Y+  +P +  Y+ +  +F R NGYV+T+ GRR +  +IN   + +R   ER A
Sbjct: 800 AKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGRRRYLKDINGSNAIVRGAAERNA 859

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI++HK L +    TKMLLQ+HDELVF+V + E+     +I   
Sbjct: 860 VNAPIQGSAADIIKIAMINIHKKLSEGNYKTKMLLQVHDELVFDVHKAELEELKSLIQSE 919

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A      L VPL V + + +NW E +
Sbjct: 920 MENA----YKLAVPLDVELGLGDNWLEAH 944


>gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400]
 gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400]
          Length = 913

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/983 (36%), Positives = 537/983 (54%), Gaps = 86/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R  DG P  A+ G  NML ++    RKE  A + A
Sbjct: 8   EGKTLLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR++ Y DYKANRP +P+ L  Q+  + +A +A G P + I+G EADD+I 
Sbjct: 63  CVFDAKGKTFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T +  AEK G  V + + DKDL QLVS    L +T+  EK+D   V+ K+G+PPE+++  
Sbjct: 123 TLSTEAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD++DN+PG+   G KTA   L ++ +L+ I+ +A  IK     +N+    +   +
Sbjct: 183 LSLVGDTVDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGA-VGDNLRRALDFLPM 241

Query: 243 SRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           ++KLV +  +  +T  +    E L  +  +   L        F                 
Sbjct: 242 AKKLVTVERNCDLTDHIVSIGESLQSQPESRAELREVFTRHGF----------------- 284

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                        K    E EI              +D      ++  P           
Sbjct: 285 -------------KTWLREVEI--------------ADAVEGPETDVPPALSVD------ 311

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +   Y  +   +    W+ K+      SF   T ++D   ++ + +++S    + 
Sbjct: 312 -----HERHYDTVQTWEQFDAWLGKINAAELTSFDTETTSLDPMIAQIVGLSLSVEAGR- 365

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L+ H   D+        E+L+ LK + E+    K+G ++KYD+ VL  
Sbjct: 366 -------AAYVPLA-HRGPDAPV-QLPRDEVLARLKPWLESAGHKKVGQHLKYDEQVLAN 416

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
           YGI MRG   D +L SYV++S R+ HD+ S+A + L       +E+       I  D+++
Sbjct: 417 YGIEMRGIEHDTLLQSYVVESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVA 475

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  E+A E++++ L+L  +L P++  EK L +VY  ++ P   V+ +ME TG+ ID +
Sbjct: 476 LDKAAEYAAEDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSE 535

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+Q S+EI+  L+ LE   Y L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 536 KLRQQSSEIATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTD 595

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRL
Sbjct: 596 EEVLQKL-AEDFPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRL 654

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIP++T  G++IR AFI+P   KL+SADYSQIELRI+AHI+    L   F  
Sbjct: 655 ASNDPNLQNIPVRTGEGRRIREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQ 714

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AAEIF V   +VS   RR AK INF +IYG+S F LA+ L I R  A  YI 
Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF R+PG+  Y+++T+   +  GYVET+FGRR+   EIN      R   ERAAINAP+Q
Sbjct: 775 RYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V K +E+ K+ T+M++Q+HDEL+ EVP+ E++   + +   M     
Sbjct: 835 GTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVA- 893

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
              +L+VPL   +    NW+E +
Sbjct: 894 ---DLKVPLVAEVGAGLNWEEAH 913


>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
 gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
          Length = 941

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/990 (35%), Positives = 551/990 (55%), Gaps = 63/990 (6%)

Query: 1   MQ-KENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M   +  LFL+D  + I+R +YA     R    G   +AI GF N L+ +++  +     
Sbjct: 1   MNHSDKRLFLLDAYALIFRGYYAFIKNPRINSKGFNTSAIMGFLNSLFDVIRREQ----P 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV+FD    T R   +P YKANR + PE +   +P ++    A  IP +  QG+EAD
Sbjct: 57  THLAVVFDVGEATIRTVDFPQYKANREETPEAIREGVPYIQEILNALRIPVLYAQGYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGI 174
           D+I T    AE+ G+   +++ DKD  QLVS    +Y         E   +E V +K+ I
Sbjct: 117 DVIGTLAKKAEQRGYTTYMVTPDKDFAQLVSEHIKMYKPPAYGRGVEIWGVEEVKEKYQI 176

Query: 175 PPE-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
               +++ L  + GDS+DNIPGIPG+G KTA   ++ YG+LE +L N  ++K  K++EN+
Sbjct: 177 EDPIQVIDLLGMMGDSVDNIPGIPGVGEKTAIKFIKTYGSLEGLLANTDQLKG-KQKENV 235

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +E  E A LS+KL  + TDVP+    E L +   N  ++      LEF +++  V   Y+
Sbjct: 236 IENREQAILSKKLATIITDVPVEFDEEDLTVCPPNLEKVTDLFTELEFRRMLETVYRLYN 295

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            D + I                 +T+ +   +I+ ++     + T +   + T +++ + 
Sbjct: 296 VDPSRINQ---------------DTQNEISQSIQKNK-----ETTQQSLFDFTSEEVIVP 335

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                +     +  Y  +      +  + K++T+ S +F   T ++D   +K + I+ S 
Sbjct: 336 LNSNFTNISNTDHFYQLVDTPVARRLLIDKMKTLDSFAFDTETTSLDPLEAKLVGISFSW 395

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              K          ++                 K I+    + F N    KIGHNIKYD 
Sbjct: 396 EKGKG--------YYLPFPEDFDD--------AKNIILEFAELFSNPAIEKIGHNIKYDL 439

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSI 528
            VL++YGI + G   D M+  Y+L+     H++  +++ +L Y    I     K  K+  
Sbjct: 440 KVLYKYGIRIDGENFDTMIAHYLLNPDM-RHNLDVLSETYLGYKPVSIETLIGKKGKNQK 498

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              ++   +  E+  E+S+V  QL  +  P+L    L  ++  ++ P++ V++ MEI GI
Sbjct: 499 NFREVDLIEQTEYGTEDSDVTFQLKNIFEPELEKVSLTKLFRNIEMPLMKVLATMEIEGI 558

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
           ++D D L+Q+S +  + +  LE+ I+  +GE+FNL+SPKQLGDILF KLK  P   KTKT
Sbjct: 559 RLDVDFLQQLSKKHQEKIKELEQKIFSEAGEEFNLNSPKQLGDILFDKLKLEPKSKKTKT 618

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T  + L ++     PIIKNIL +RQL K+KSTY D+LP  +N  TQRVHT ++   
Sbjct: 619 GQYSTGEEILSKLA--HYPIIKNILHYRQLQKLKSTYIDALPELVNPVTQRVHTTFAQTV 676

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
             TGRL+S+ PNLQNIPI+T+ GQ+IR+AFI+  P  K+ISADYSQIELR++A +A+   
Sbjct: 677 AATGRLSSVNPNLQNIPIRTEEGQQIRKAFIARNPEYKIISADYSQIELRLIAQMAQDPV 736

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F++  DIH   AA+IFGV +++V+ + R  AKT+NF IIYG+S F LA Q  +  +
Sbjct: 737 MVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIYGVSAFGLAQQTGLSNT 796

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA   I  Y+  +P + +YI++     R+NG+VET+  RR +  +INS  +++R+  ER 
Sbjct: 797 EAKKLIDAYYETYPTLKKYIDQQIASARENGFVETLMRRRRYLKDINSRNNTVRSHAERN 856

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+NAPIQGSAADI + AMI + K L D K ATKMLLQ+HDELVF+ P  E+   S++I  
Sbjct: 857 AVNAPIQGSAADIVKLAMIQIQKEL-DKKFATKMLLQVHDELVFDAPISEVEEVSKMIKT 915

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +ME      I + VPL   + V +NW E +
Sbjct: 916 TMESV----IQMEVPLVAEVGVGDNWLEAH 941


>gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 927

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/983 (33%), Positives = 530/983 (53%), Gaps = 68/983 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYR++YA     R    GL  +A+ GFCN L ++L   R     SH  V
Sbjct: 2   DKLFLIDAYALIYRSYYAFINNPRINSKGLNTSAVMGFCNTLNEVLTKER----PSHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+  +TFRNE +P YKA R + PE +   +P+++    A+ IP +++ GFEADD+I T
Sbjct: 58  AFDH-GLTFRNEAFPQYKAQREETPEDIKRSVPIIKDILTAYHIPVLQVDGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPE-KM 179
               A ++G    +++ DKD  QLV     +Y        E +  + V +K+ I    ++
Sbjct: 117 LALKAGQQGVDTYMLTPDKDYAQLVRSNVYMYRPRHGGGYETMGPDEVNQKYNISSPLQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTA+ L+ E+G +E +L N +++K  K RE +    E 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTASKLINEFGTVEQLLENTAQLKG-KMREKVEAAVED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVP+ + LE L L++ +  +L      LEF     R+           
Sbjct: 236 IKMSKFLATIRTDVPVELDLEQLQLKEPDAAKLQEIFTELEFKSFATRLLNK-------- 287

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                     EN+ +                  SL D+ +   ++ +  +          
Sbjct: 288 ---AEKPKKVENRQL------------------SLFDEPAMAEADNSLFEPQSAASANRQ 326

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  +    D+Q  V  L T    S    T + +A  ++ + ++ +  ++K  
Sbjct: 327 TIETTPHEYHLVQTEADMQALVTLLSTADVISLDTETTSTNAIEAQLVGLSFAIEEKK-- 384

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +     +         + I++  K  +EN   LK+G NIKYD  VL  Y
Sbjct: 385 ------AYYVPVPEQADE--------AQNIVNRFKAIYENPKTLKVGQNIKYDLEVLRNY 430

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRKSSIPIDKIS 534
           GI+++G   D M+  Y+L      H++  +A+ +L+Y        I    K+   + +++
Sbjct: 431 GIALQGPLFDTMVAHYLLQP-ELRHNMDFMAEVYLNYETVHIDALIGPKGKAQKNMRELA 489

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            S+V  +A E++++ LQL  +L+PKL+   +  ++  ++ P+I V+++ME  G++ID   
Sbjct: 490 PSEVYNYACEDADITLQLKNVLQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAA 549

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           LK+ S   ++ +L LE+ IY  +G+ FN++SPKQ+GDILF ++K      KTKTGQ+  T
Sbjct: 550 LKETSQVFTERMLQLEQEIYQAAGKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQY-VT 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           ++++ Q     +PI+ +IL++R L K+  TY D+LP  IN RT  +HT ++ A T TGRL
Sbjct: 609 SEEVLQTLRSKHPIVAHILDYRALKKLLGTYVDALPKLINPRTGHIHTSFNQAVTATGRL 668

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++ + G++IR+ FI     +  SADYSQIELR++AH+++   +   F  
Sbjct: 669 SSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLDAFRE 728

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+   + +V+   R  AK  NF IIYGI+ F LA +L I R+EA   I 
Sbjct: 729 GYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGIIYGITVFGLADRLNIERAEAKQLID 788

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP + +Y+E+ K   R NGYVET F RR +  +INS  +++R I ER AINAPIQ
Sbjct: 789 GYFKMFPQVQQYMEQAKETARANGYVETFFHRRRYLPDINSGNATVRAIAERNAINAPIQ 848

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ + +  +   + +KM+LQ+HDEL F V   E     +I++  M+ A L
Sbjct: 849 GSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNFSVLPTEKEQVERIVMEEMQAAYL 908

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL  +    NNW E +
Sbjct: 909 ----LDVPLVADSGWGNNWLEAH 927


>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
 gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
          Length = 919

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/977 (35%), Positives = 541/977 (55%), Gaps = 64/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RAF+A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAFHALPQLTT-STGLHTNAIRGAISAIQKLMRRIQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+E+ P YK +RP +P  L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHELSPLYKGDRPSMPSELSQQIPYLHALIRALGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AE  G  V I + DKD+ QLV+    L D+ K++ +DI+ V +K+G+ P +++    
Sbjct: 117 AKRAEAAGHQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDIQGVFEKFGVWPHQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG+L  IL N   IK  +  ++I +  E   +  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLNEYGSLGGILENVEHIKG-RVSQSIKDNLEGITIDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+ + I  E L L D +   L +    LEF   +  +   ++ +         
Sbjct: 236 QLATIVCDLDLNISWEDLKLADPHVETLRNLYTELEFRNQLQSLDHPHNPN--------- 286

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
             NTT  +  A  T +  +  I     +  S++                         + 
Sbjct: 287 --NTTYKQASAQATALPANKDIPDEHATLSSEED-----------------------RLG 321

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  ++   D +   Q++ +    +    T ++D   ++ +  +++  D KD     +
Sbjct: 322 EATYHTVLTQTDWELLFQRMSSETRFAIDTETTSLDYRVAEMVGFSVAF-DAKDAYYVPL 380

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +             +    +++L+ +K   EN+   KIGH++KYD  +   +GI ++
Sbjct: 381 AHDYAGAP---------EQLNREQVLAQIKPILENDQVEKIGHHLKYDAHIFANHGIELK 431

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G F D ML SYVL+S  + H +  +A+ +LS+   T +++          ++I       
Sbjct: 432 GWFFDTMLASYVLNSVATRHGMDDVARLYLSHLTTTFEQVAGKGAKQKSFNQIELEVASP 491

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L ++   ++ P+  +++ ME  GI++D   L Q+S
Sbjct: 492 YAAEDAHVTYRLYEVLAEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFLDQLS 551

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K +  LE+   +++GE FN++SPKQ+G++LF KL    G KT TGQ+ T+   LE+
Sbjct: 552 IEFAKTMQELEQQAMEMAGETFNIASPKQVGEVLFEKLGIKGGKKTTTGQFSTSESILEK 611

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++PI   ILE R L+K+KSTY D+L    N  T RVHT Y  A T TGRL+S +PN
Sbjct: 612 I---EHPIAAVILEHRSLAKLKSTYTDALVKQSNNSTHRVHTSYHQALTATGRLSSSDPN 668

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+ ++G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F +  D+HR
Sbjct: 669 LQNIPIRGEIGRQIRKAFIAPAGRVLLAADYSQIELRLMAHFSQDDALLDAFRHGQDVHR 728

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ +E V+   RR AK +NF ++YG+S F L  QL   R E+ DYIK+YFHR+
Sbjct: 729 RTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQDYIKQYFHRY 788

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI+EY+++T+    + G+V+T+FGRR++  +I++    +R   ERAAINAP+QGSAADI
Sbjct: 789 PGIYEYMQRTRQLALEQGFVDTLFGRRLYTPDIDARNMMVRKAAERAAINAPLQGSAADI 848

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V K L   +   ++LLQ+HDELVFEV E      +  +   ME      + + 
Sbjct: 849 IKLAMIAVDKILPKDQ--ARLLLQVHDELVFEVDENIADELAPQLAEVMESV----VEIS 902

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V +    NW+E +
Sbjct: 903 VPLLVEVGKGCNWEEAH 919


>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
 gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
          Length = 890

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/945 (35%), Positives = 517/945 (54%), Gaps = 67/945 (7%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           M+  +++    +      AVIFD    TFR+E+Y  YKANRP +P+ L  Q+  +    +
Sbjct: 1   MIRSMMRQFASDR----MAVIFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIR 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI 163
           A G+P + I+G EADD+I T    A + G  V I + DKD+ QLV     L +T+    +
Sbjct: 57  AMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVL 116

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  LLQ  G LE++  N  +
Sbjct: 117 DREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDK 176

Query: 224 I------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           I        K   + + E  + A LS +L  ++ DV +    + L+ +  +   L+++  
Sbjct: 177 IAALGFRGSKTMAQKLEENRDNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYG 236

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
            L F   +  +                                        +   +  +Q
Sbjct: 237 KLAFKSWLTELLDG------------------------------------GTGIVTADEQ 260

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
               +   +        + +     I+   Y  I+N +D  QW++KL+     +F   TD
Sbjct: 261 AKASSVTASNAVSNAAAIPESPAAQIDRSQYQTILNEQDFNQWLEKLQQAELFAFDTETD 320

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           ++D   +  + ++ +  +  +     V   ++D           +      +++ LK   
Sbjct: 321 SLDYMVANLVGMSFAVAEG-EAAYIPVAHDYLDAP---------QQLDRAWVIAQLKPLL 370

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+ S+A ++L ++
Sbjct: 371 EDESKAKVGQNLKYDASVIARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHS 430

Query: 517 ---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERL 572
               ++I    K+ +  ++I   +  ++A E+++V L+L   + P +  + KL  VY  +
Sbjct: 431 CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYSEI 490

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P++ V+S++E TG+ ID  LL   S EI+  L  LE+  Y+L+G+ FNLSSPKQL  I
Sbjct: 491 EMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEQKAYELAGQSFNLSSPKQLQTI 550

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+KSTY D LP  I
Sbjct: 551 LFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMI 609

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P   K+++ DYSQ
Sbjct: 610 NPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQ 669

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH++    L   F    DIH   AAEI GV IE+VS + RR AK +NF +IYG+
Sbjct: 670 IELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGM 729

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   + GYVETIFGRR+H  EI
Sbjct: 730 SAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEI 789

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFE 931
            S  +  R   ERAAINAP+QG+AADI ++AM+ V + ++       K+L+Q+HDELVFE
Sbjct: 790 TSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFE 849

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           V E  ++     +   ME A      L VPL       +NW++ +
Sbjct: 850 VEESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQAH 890


>gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
 gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
          Length = 949

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/987 (33%), Positives = 526/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M+ +N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MESDNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKEIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + ++ V  K+ I  
Sbjct: 117 VIGTLATEAGRQGIITYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVDEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E  +   L    + LEF  LI+RV    +  
Sbjct: 236 NREMITFSKFLATIKIDVPIQLDMDSLVREQADEDSLRQIFEELEFRTLIDRVLKKENAG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                P        ++    +    +    ++   F++            T  +    + 
Sbjct: 296 NGITTPTGNKTAAEKSNLAPLPLFPEEGGAVQGDLFANF-----------TGNEPGEAKN 344

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L+     N  Y  I   +   + +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 345 SNLATLETLNCDYQLIDTEEKRTKIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSIAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +                +I++  +  FENE+ LK+G NIKYD +V
Sbjct: 405 NE--------AFYVPVP--------ADQEEALKIVNEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG+ ++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LQNYGVQVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLRYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++   V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLAPKDVYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ SA  +  + ++E+ IY+L+GE FN++SPKQ+G++LF KL+      KTKTGQ
Sbjct: 568 DTEALKQSSAHFTAQMENIEKEIYELAGETFNIASPKQVGEVLFDKLRIVEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISVFGLAERMNVERKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP EE     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVEEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      + VPLK +     NW E +
Sbjct: 927 HA----YRMHVPLKADCGWGKNWLEAH 949


>gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
 gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
          Length = 928

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/979 (39%), Positives = 561/979 (57%), Gaps = 59/979 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +NHL+LVDGS +I+RA++  P L+ KH G PV A+ G+  MLWKL     K    +H AV
Sbjct: 3   QNHLYLVDGSGYIFRAYHQLPPLTNKH-GQPVGAVYGYTTMLWKLADELGKAEGPTHLAV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + D  + TFRNE+Y  YKANRP  PE L+PQ P++R AT+AF +P IE  GFEADDIIA+
Sbjct: 62  VLDKGSHTFRNEMYDAYKANRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIAS 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           YT  A  +G+ VTI+S+DKDLMQL+ P   +YDT+K E+   ++V+ K+G+ PE++  + 
Sbjct: 122 YTKAAIAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMNKFGVQPEQLGDVL 181

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS+DN+PGIPGIG KTAA L+ EYG LE  L  A  +K+ K +EN++ +A+ ARLS
Sbjct: 182 ALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALEAAPSMKKSKMQENLIAHADMARLS 241

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV L   + +  PL+ L L+      L  FL+   F  L+                  
Sbjct: 242 RRLVALHDAMDLPEPLDDLTLKGIPLEPLQQFLEHHGFKSLL------------------ 283

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                      A             +  S  +   + ++ E+ P               I
Sbjct: 284 ---------ARAGAPAAAVAIATAAAAVSEATPPAAPVHEEEPP---------------I 319

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +   Y  +V  + + +W+      G  +    TD +D      + ++++           
Sbjct: 320 DRSLYETVVTEEALDRWIAAAHAEGLVAVDTETDMLDCVSCALVGVSLAVGPN-AACYVP 378

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           V     D+                 +L+ LK   E++  LKIG N+KYD  VL R+GI +
Sbjct: 379 VGHGGKDMFA-----EKPDQLPLALVLAKLKPLLEDDSVLKIGQNLKYDITVLRRHGIEI 433

Query: 484 RGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQV 538
             ++D ++MS+ LD+G+S   H +   A+  L++     K++  + KS I   ++   + 
Sbjct: 434 APYDDTIVMSFDLDAGQSLAGHGMDEAAKTHLNHICISFKDVCGTGKSQISFAEVPLDKA 493

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            E+A E+++V L+LW L + ++  E    VYE +D+P++ V+++ME  GI++D++ L ++
Sbjct: 494 TEYAAEDADVTLRLWKLFKTRIANEGATRVYELVDRPLVSVIAKMEHEGIKVDREALSRL 553

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SAE +  + +LE  I+ L+G+ F + S +QLG ILF K+ +  G K K+G + T    LE
Sbjct: 554 SAEFTAGIAALETEIHGLAGQPFAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILE 613

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           Q+      I   +L+WRQLSK+KSTY D+L   IN+ T RVHT YSL+   TGRL+S +P
Sbjct: 614 QLKVQGAEIAGKVLDWRQLSKLKSTYTDALQAQINRDTSRVHTSYSLSGAQTGRLSSTDP 673

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T++G++IR AF++ P   +++ADYSQIELR+ AH+A +  L + F N  DIH
Sbjct: 674 NLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIH 733

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++FG    +V+   R  AKTINF+I+YGIS + LA +L I   EA D I RY+ R
Sbjct: 734 AATAQQLFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQDMISRYYER 789

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPGI  YI  T    R  GY ET+FGR+  +  I +     R   ERAAINAPIQG++AD
Sbjct: 790 FPGISLYITDTIEKARSKGYTETLFGRKTWFPRIKASVQHERQGAERAAINAPIQGTSAD 849

Query: 899 ITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I +RAM  +  +L    L   KMLLQ+HDELVFE+PE ++  AS +I   ME A  P + 
Sbjct: 850 IIKRAMARMGPALAAEGLHDVKMLLQVHDELVFELPEGDVEQASAVIRRVMEGAAEPIVK 909

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V I    +W   +
Sbjct: 910 LSVPLGVEIGHGPSWGAAH 928


>gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136]
          Length = 930

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/986 (34%), Positives = 514/986 (52%), Gaps = 66/986 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L LVDGSS++YRA++A        DG P  A+ G  NML +L    R E    +
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD+
Sbjct: 57  CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T      + G  V + + DKD+ QLV     L +T+  E +DIE V  K+G+ P+++ 
Sbjct: 117 IGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIR 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTA   L+ YG+L  ++ +AS IK  K  EN+       
Sbjct: 177 DYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIKG-KVGENLQAALPQL 235

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS  LV ++TDV +   L    E L        +L+   K   F   +           
Sbjct: 236 PLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLK---------- 285

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E + +T      F S S       + + P +   E+  
Sbjct: 286 --------------------EAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +         + KL    +      T ++DA ++  + I+I+    
Sbjct: 325 ----TAPEKLDYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAG 380

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         ++I +    +  +  +    +++L  LK    N    KIG N+KYD+ V 
Sbjct: 381 E--------AVYIPVGHSLT--AAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVF 430

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDK 532
             YGI++ G   D ML SY+++S    H +  ++++WL     T + +       I    
Sbjct: 431 ANYGIALNGIAGDAMLASYIIESHLG-HGLDELSERWLGLETITYESLCGKGAKQIGFAD 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  Q  E+A ++++  L+L   LR ++  EK L +YE+++ P+  V+ +ME  G+QID+
Sbjct: 490 VAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQIDR 548

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQW 650
             L + SAE+   L+ LE+  Y  + + FNL+SPKQL +ILF K+  P+    KT  G  
Sbjct: 549 AELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 608

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ +  RVHT Y+ A  +T
Sbjct: 609 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 667

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRLAS  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   
Sbjct: 668 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  D+HR  AAE+FG   E VS + RR+AKTINF +IYG+  + LA  L I    A +
Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKN 787

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R+PG+ EY+++TK      GYVET+FGRR++  +I +  ++ R   ERAAINA
Sbjct: 788 FIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINA 847

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+A+D+ +RAMI V   L D  + +K+++Q+HDELV EV E E+    + +   M K
Sbjct: 848 PMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAK 906

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL   + V  NW+E +
Sbjct: 907 VDGGL--LDVPLVAEVGVGENWEEAH 930


>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 870

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/922 (36%), Positives = 509/922 (55%), Gaps = 68/922 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGR
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F 
Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+
Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP+
Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848

Query: 893 QGSAADITRRAMISVHKSLEDH 914
           QG+AADI +RAMI+V   L+  
Sbjct: 849 QGTAADIIKRAMIAVDAWLQAE 870


>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans]
          Length = 922

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/977 (34%), Positives = 517/977 (52%), Gaps = 63/977 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    G P  A+ G  NML   L+         + A + 
Sbjct: 3   RLVLIDGSSYLYRAFHALPPLTNAA-GEPTGALFGVVNMLRATLKER-----PEYVAFVV 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+ +YP YKANRP +P+ L  Q+  +     A GI  +   G EADD+I T  
Sbjct: 57  DAPGKTFRDALYPQYKANRPPMPDELRAQVEPMCQIVHALGITILRESGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQA 184
                +G  VTI + DKD  QLV P   L +T+   ++D    V++K+G+ P ++V L A
Sbjct: 117 LQGVGDGMDVTISTGDKDFAQLVRPGVQLVNTMSGSRMDSDAAVMEKFGVLPHQIVDLLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+IDN+PG+   G KTAA  L +YG+L+ ++ NA  IK  K  +N+        L+R
Sbjct: 177 LMGDTIDNVPGVEKCGPKTAAKWLADYGSLDGVIANADAIKG-KIGDNLRAALGRLPLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            LV ++TDV ++     L L +    +L    +   FT+ +       D D     P V 
Sbjct: 236 DLVTIKTDVVLSGGPRTLGLREPEPEQLRGLYQRYGFTQALR------DLDGGVAAPYVA 289

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              +   +G A                +  +                             
Sbjct: 290 SEASPSLRGTAAGYARAAAAPDGALDPALAA----------------------------- 320

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  +   +     + +L      +F   TD +DA  +  + ++ +      D    +
Sbjct: 321 KGHYAAVTTAEQFDALLARLRAADGFAFDTETDALDAMRANLVGLSFAIEPGHAD-YLPL 379

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +    V   +                    E+    K+G + KYD  VL R+G+ + 
Sbjct: 380 GHDYPGAPVQLDRVQALAALAPLL---------EDPAKRKVGQHGKYDLHVLRRHGVQVH 430

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D ML S+VL+S  S HD+ S+A+++L Y     +++       I   +++      
Sbjct: 431 GYADDTMLESFVLNSTASRHDMDSLAKRYLGYDTVKYEDVAGKGAKQIAFSQVAIDDATG 490

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L   L  +L  E  L  VY  ++ P++ V++++E  G+ +D   L++ S
Sbjct: 491 YAAEDADITLRLHRALSAQLDAEPALARVYREIEMPLVPVLTRIEANGVCVDIAELRKQS 550

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
             +S+ +L+ ++    L+G  FNL SPKQL  +LF +LK P+  KT  GQ   T ++  +
Sbjct: 551 QVLSQRMLAAQQKAVALAGRSFNLDSPKQLQAVLFDELKLPALLKTPKGQPS-TNEEALE 609

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K++STY D LP  +N  T RVHT Y  A   TGRL+S +PN
Sbjct: 610 AIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGAATGRLSSSDPN 669

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH+++   L + F   +D+HR
Sbjct: 670 LQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSEDPGLLRAFSQGVDVHR 729

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FG  +E+VS   RR AK INF ++YG+S F LA  L I R EA DY+  YF R+
Sbjct: 730 ATAAEVFGRTLEQVSANERRAAKAINFGLMYGMSAFGLARNLGIGRGEAQDYVALYFSRY 789

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + +++E+ +   R  GYVET+FGRR++ ++IN+ +  +R   ERAAINAP+QG+AADI
Sbjct: 790 PAVRDFMERMREQARTQGYVETLFGRRLYLNDINAKQQGLRAGAERAAINAPMQGTAADI 849

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAM+SV   L+DH+    M+LQ+HDELVFEV  + +      +   M  A      L+
Sbjct: 850 IKRAMVSVDTWLQDHRARALMILQVHDELVFEVDADFVEILLPEVTWRMAAAA----ELK 905

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+  V +NW E +
Sbjct: 906 VPLVVDSGVGDNWDEAH 922


>gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
 gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
          Length = 909

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/981 (35%), Positives = 530/981 (54%), Gaps = 87/981 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGSS+++RA++A P L+    GL   A  G   M+ +L+ +   +       V+FD
Sbjct: 5   LILIDGSSYLFRAYHALPPLTNSK-GLNTGAAKGVVGMVRRLVADYPGDQ----VVVVFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRNEIY +YKANRP +PE L  Q+  +    +A G+P + + G EADD+I T   
Sbjct: 60  AKGPTFRNEIYAEYKANRPPMPEELREQIEPIHAMIRAMGLPLVCVSGVEADDVIGTLAL 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A     +V I + DKD+ QLV     L +T+    +D   V+ K+G+PPE ++ L AL 
Sbjct: 120 EAAARQQSVLISTGDKDMAQLVGDHVTLINTMTNTTMDHGGVVDKFGVPPELIIDLLALQ 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAETA 240
           GD +DNIPG+PG+G KTA  LLQ  G L +I  + SR+        +K    + E+ E+A
Sbjct: 180 GDKVDNIPGVPGVGEKTALALLQNLGGLNDIFADLSRVADLAVRGAQKLGARLAEHRESA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +L  ++TD  + +  + L+ +  +   L  + K LEF                   
Sbjct: 240 ELSYRLATIKTDCELELSTDDLLAKAPDSAALTYWYKELEF------------------- 280

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                      KG   E               +L+D      SE    +     L+ +  
Sbjct: 281 -----------KGWLSE---------------ALTDDALDSPSEVAVVEPLAPPLEVI-- 312

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     +++   + +W+  +E     +F   T ++D   ++ + +A++    +   
Sbjct: 313 ---------TVLSLSQLDEWLAAIEEAPLFAFDTETTSLDYMQAEIVGVALAVATDR--- 360

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I L+         +      +L+ L+   E+    K+G N+KYD  VL  YG
Sbjct: 361 -----AAYIPLAHDYP--GAPEQLDRDLVLTRLRPLLEDSQRAKVGQNLKYDANVLANYG 413

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I++RG   D ML SYVLD+  S HD+ ++A K+L       +E+       I  + ++  
Sbjct: 414 IALRGIAHDSMLESYVLDATGSRHDMDTLALKYLGEKTTHFEEVAGKGAKQITFNAVAIE 473

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           Q   +A E++ V L+L   L PKL  E  L  +Y  ++ P++ ++S++E  G ++D+ LL
Sbjct: 474 QAAPYAAEDAAVTLKLHQTLWPKLESEAYLSTLYRDIELPLVPILSRIERNGARVDRQLL 533

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S E+ + L  LE++ +DL+G+ FNL SPKQLG+ILF KL+ P   KT  G    TA+
Sbjct: 534 ADQSHELGERLAILEQSAHDLAGQAFNLGSPKQLGEILFQKLELPVLKKTPKGAPS-TAE 592

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+      D P+   ++E+R LSK++STY D LP+ I+  T RVHT Y  A T TGRL+S
Sbjct: 593 DVLAELALDYPLPAVLMEYRSLSKLRSTYTDRLPDMIDPGTGRVHTSYHQAVTATGRLSS 652

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T  G++IR+AF +P  + +++ADYSQIELRI+AH+++   L   F  +L
Sbjct: 653 SDPNLQNIPIRTAEGRRIRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLLGAFGANL 712

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H   AAE+FGV +E VS   RR AK INF +IYG+S F LA QLR+ R EA  YI RY
Sbjct: 713 DVHSATAAEVFGVPLEDVSSDQRREAKAINFGLIYGMSAFGLAKQLRLGRHEAQAYIDRY 772

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ +Y+ +T+      GYVET+FGRR++  EIN+     +   ER AINAP+QG+
Sbjct: 773 FERYPGVADYMTQTRELAHSQGYVETLFGRRLYLPEINARNKQRQMAAERTAINAPMQGT 832

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI+V + L    +   M++Q+HDELVFEV + E+ T +  I   M       
Sbjct: 833 AADIIKLAMIAVDEWLSKTDIDALMIMQVHDELVFEVADTEVATLTSAIPDLMADVA--- 889

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
            +L VPL V   V  NW + +
Sbjct: 890 -SLDVPLLVEAGVGTNWDQAH 909


>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
 gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
          Length = 930

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/987 (34%), Positives = 528/987 (53%), Gaps = 68/987 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MDSDNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIP- 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDIKS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PGIG KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDSSDNIPGCPGIGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E  +   L S  + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKIDVPIQLEMDALVREQPDEEALRSIFEELEFRTLIDRVLKKETSA 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
              + P                    +   I+   F++ +      N     +K  LE L
Sbjct: 296 PLPLFPE-------------------KSEGIQGDLFANFTG-----NEPSEAKKSNLETL 331

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + L         Y  I   +  ++ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 332 ESLC------CDYQLIDTEEKRKEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSIAE 385

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +              T +I++  +  FENE  LK+G NIKYD +V
Sbjct: 386 NE--------AFYVPVP--------ANQEETLKIVNEFRPVFENESSLKVGQNIKYDMIV 429

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG+ ++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 430 LQNYGVEVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 488

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++   V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 489 RDLAPKDVYRYACEDADVTLKLKNVLEKELKENGTERLFYDIEMPLVPVLVNIERNGVLL 548

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ SA  ++ +  +E+ IYDL+GE FN++SPKQ+G++LF KLK      KTKTGQ
Sbjct: 549 DTEALKQSSAHFTEQMERIEKEIYDLAGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQ 608

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 609 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTA 667

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 668 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 727

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+I+ + +++V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 728 AFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANFGIIYGISVFGLAERMNVERKEAK 787

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +PG+  Y++++    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 788 ELIDGYFETYPGVKAYMDQSIRVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 847

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++      + TKM+LQ+HDEL F VP +E     +I++  ME
Sbjct: 848 APIQGSAADIIKVAMARIYQRFRAEGIKTKMILQVHDELNFSVPIDEKERVEEIVIEEME 907

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           KA      + VPLK +     NW E +
Sbjct: 908 KA----YRMHVPLKADCGWGKNWLEAH 930


>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
 gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
          Length = 924

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/984 (34%), Positives = 527/984 (53%), Gaps = 75/984 (7%)

Query: 6   HLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  +  YRA Y   + PL++ K  G   +A  GF   L KL++    E    + A
Sbjct: 3   RLYLIDAMALAYRAHYVFISRPLVNSK--GQNTSAAYGFTTSLLKLIE----EHGMDYMA 56

Query: 63  VIFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           V+FD      TFR  IY +YKA+R   PE LL  LP ++   +A  IP IE  G EADD+
Sbjct: 57  VVFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP 176
           I T    AE  G  V I+S DKD +QL+SP   +Y   +  +    I IE   + +G+ P
Sbjct: 117 IGTLARRAEAHGIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLITIETFRETYGLEP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + + AL GD  DN+PG+PGIG KTA  L+Q+YG++EN+L +A  +K K+ RE +L +
Sbjct: 177 HQFIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLNH 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS++LV +RTDVP+ I  E       + PRL+   + LEF  L+ R+        
Sbjct: 237 REEALLSKRLVTIRTDVPLRIRWEAFHRARPDLPRLLQIFQELEFDSLVRRIREGGLAGI 296

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N E  +                                D+  +   E        E LQ
Sbjct: 297 VNGEAAL--------------------------------DEALEAEGEPEFDFGPYEPLQ 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                  +   Y  + N + + + V +L+ +   +    T + +A  +  + IA S    
Sbjct: 325 VYDPEKAD---YRIVRNRQQLDELVARLDGLERLAIDTETTSTEAMWASLVGIAFSWEKG 381

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         +   L            T T+ +L  L          K+G N+KYD +VL
Sbjct: 382 QGYY------VPTPLP---------DGTPTETVLERLAPILRR-AQRKVGQNLKYDLVVL 425

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            ++G+ +   + D M+  Y++      H++  +A+++L Y      E++ S +    +  
Sbjct: 426 AQHGVEVPPPYFDTMVAHYLIAP-EEPHNLDVLARQYLRYQMVAITELIGSGRDQKSMRD 484

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +S  +V  +A E++++ LQL  +L  +L    L H+ E ++ P+I+V++ ME TGI ID+
Sbjct: 485 VSIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDR 544

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L+++  ++   L  LE  IY+++G +FN+ SP+QL D+LF KL     A+T TG+   
Sbjct: 545 TVLREIGKQLEAELHELEAKIYEVAGVEFNIGSPQQLADVLFKKLGLKPRARTSTGRPS- 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T + + Q     +P+   IL+WR L+K+KSTY D L   I+  T R+HT ++   T TGR
Sbjct: 604 TKESVLQELATQHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGR 663

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIP++T++G++IRRAF+  P  KL+SADY QIELRILA ++    L + F 
Sbjct: 664 LSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFL 723

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AA +F V  E+V+P+ RR AK +N+ I YGIS + LA +LR    EA + I
Sbjct: 724 EGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQELI 783

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + Y   FPG+  Y+ +     RQ GYVET+ GRR +   INS   + R++ ER A+N PI
Sbjct: 784 EEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMPI 843

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+ AD+ + AM+ ++  L+      KMLLQ+HDELVFE+P EE+    Q++   M++A 
Sbjct: 844 QGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEMPPEEVEPVRQLVEQEMKQAL 903

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
             +    VP++V+I V +NW + +
Sbjct: 904 PLEG---VPIEVDIGVGDNWLDAH 924


>gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642]
          Length = 921

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 528/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVPGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G   + +  N  ++        K     + E+ E
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVATLPIRGAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +   L+     LEF   I  +          
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDTLMELYAELEFKSWIEDLQR-------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                      ++++  Q+L +E     
Sbjct: 292 -------------------------------------------DAKRAGQELTVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVEAREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+   +K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKIKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     ++I      
Sbjct: 415 CAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPVLSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
          Length = 949

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/987 (33%), Positives = 526/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M+ +N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        S
Sbjct: 1   MESDNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PS 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++    A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLV+    +Y        E + IE V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E  +   L    + LEF  LI+RV    +  
Sbjct: 236 NKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENSA 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                       T ++    +    +    I+   F++ +      N     +K  LE L
Sbjct: 296 GGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTG-----NEAGEAKKSNLETL 350

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + L      N  Y  I   K   + +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 351 ETL------NCDYQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  ++ +  +  +          +I++  +  FENE+ LK+G NIKYD +V
Sbjct: 405 N--------QAFYVPVPDNREE--------ALKIVNEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG+ ++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LENYGVQVKGALFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    +  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDIYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ S   +  +  +E+ IY+L+GE FN++SPKQ+G++LF KL+      KTKTGQ
Sbjct: 568 DTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTS 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +P +  Y+EK+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      + VPLK +     NW E +
Sbjct: 927 HA----YRMHVPLKADCGWGKNWLEAH 949


>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
 gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
 gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
          Length = 949

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/987 (33%), Positives = 528/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MDSSNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRVLKKEVSG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     + T ++    +    +    I+   F++ +      N     +K  LE L
Sbjct: 296 NGITSTPKSKVATGKSAPSPLPLFPEEGGGIQGDLFANFTP-----NEPNEAKKSNLETL 350

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +  S       +Y  I   K  ++ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 351 ESQS------RNYQLIDTEKKRREIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSIAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +     +          +I+   +  FENE+ LK+G NIKYD +V
Sbjct: 405 NE--------AFYVPVPSDRDE--------ALKIVKEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG  ++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V  +A E++++ L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + L+Q SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK      KTKTGQ
Sbjct: 568 DTEALQQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFNQTVTA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           KA      + VPLK +     NW E +
Sbjct: 927 KA----YRMHVPLKADCGWGKNWLEAH 949


>gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
 gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
          Length = 904

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/978 (35%), Positives = 523/978 (53%), Gaps = 81/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P   R  DG P   I G  NML  +     K+  + +   I
Sbjct: 2   KTLLLVDGSSYLYRAFHAMPDF-RNKDGEPTGVIYGVLNMLRNI----HKQYPSDYSVCI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN+IY +YKANRP +P+ L  Q+  ++ A  A G P +   G EADD+I T 
Sbjct: 57  FDAKGKTFRNDIYTEYKANRPSMPDDLACQIEPLKEAINAMGWPMLIESGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  A      V I + DKDL QLV+  T L +T+  E +DI+ V  K+G+PP+ ++   +
Sbjct: 117 TQQANSHNIKVVISTGDKDLAQLVNEHTVLINTMTNELLDIDGVKNKFGVPPQLIIDYLS 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + GD  DN+PG+  +G KTA   L+EYG+L++I+ NA +        N+ +       ++
Sbjct: 177 IIGDKADNVPGVEKVGPKTALKWLEEYGDLKSIIGNADKFTG-VVGNNLRQALAWLPTAK 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L+ ++ DV I         +D +   L +  +   F+  +  ++T              
Sbjct: 236 ELITIKCDVKINYSWSDFEKKDQDNIALSNLYQKYNFSSWLRDMSTQ------------- 282

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                      IE   +   +   +  +                              IN
Sbjct: 283 -----------IEHSSEEHNSPLVNPKADF----------------------------IN 303

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I    D+  W+  ++     S    T++++   ++ + I++     +       
Sbjct: 304 TKEYQLINTKHDLALWINSIKEEKFFSIDTETNSLNTMKAELVGISLCINPGR------- 356

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L     ++S+        +L  LK   E+    K+G N+KYD  +   YGI + 
Sbjct: 357 -ACYIPLCH---KNSSVDQLSLAAVLEDLKPILEDSSIKKLGQNLKYDAHIFLNYGIEIN 412

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D MLMSYV++S ++ H +  ++ K+L +     + ++    + +  D++S      
Sbjct: 413 GISDDTMLMSYVIESNQN-HGMDKLSAKYLGHNCKSYESLVGKGVNQLTFDQVSVEDAVP 471

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V LQL+L ++  L     LL VY+ ++ P +  +  +E  G+ ID  +L   S
Sbjct: 472 YAAEDADVTLQLYLAMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILGDQS 531

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
             I + LL LEE  +DL+G+ FNLSSPKQL +ILF KL+     KT +G   T+ + L +
Sbjct: 532 KVIGEKLLLLEEKAFDLAGQPFNLSSPKQLQEILFEKLEIKPLKKTPSGTPSTSEEVLSE 591

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +     P+ K ILE+R L+K+KSTY D LP  IN+ + RVHT Y+ A  +TGRLAS +PN
Sbjct: 592 LALN-YPLPKLILEYRSLAKLKSTYTDKLPKMINESSGRVHTSYNQAIAITGRLASSDPN 650

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T  G+K+R AFI+P   K++SADYSQIELRI+AH++K   L   F+N+ DIH 
Sbjct: 651 LQNIPIRTVEGRKVREAFIAPDGSKILSADYSQIELRIMAHLSKDKRLVAAFKNNEDIHT 710

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A EIF ++   VS + RR+AK INF +IYG+  + LA  L I R+ A +YI+RYF ++
Sbjct: 711 ITAGEIFNIDNSAVSSEQRRYAKVINFGLIYGMGVYGLAKNLNIERAAAQNYIERYFSKY 770

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+E TK   R+NGYVET FGRR+   EIN      R   ERAAIN P+QG+AAD+
Sbjct: 771 PSVREYMEDTKQDARKNGYVETHFGRRLWVPEINGSNGMQRAGAERAAINGPMQGTAADL 830

Query: 900 TRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            + AM+ V   L+    L  KM++Q+HDELVFEVP+ E+T   + I   ME        +
Sbjct: 831 IKMAMVGVKTWLDGQRHLKGKMIMQVHDELVFEVPDTEVTEFKENIKRIMENVA----QM 886

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V++    NW++ +
Sbjct: 887 DVPLIVDLGEGKNWEQAH 904


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/988 (34%), Positives = 540/988 (54%), Gaps = 54/988 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  LFL+D  + I+R +YA     R    GL  +AI GF N L  +++  R +    
Sbjct: 1   MADQKRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAILGFTNSLLDVIKRERPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R E++  YKANR   PE +   +P +    +A  IP +  +G+EADD
Sbjct: 57  HLAVCFDRGGSVDRVEMFEAYKANRDATPEAIKLAIPYIENILKAMHIPVVVKEGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIP- 175
           II T    AEKE + V +++ DKD  QLVS    +Y  +     E   I  V+KK+ I  
Sbjct: 117 IIGTLAKKAEKENYKVFMVTPDKDFAQLVSENIFMYRPMFGGGYETWGIPEVLKKFEIER 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE+++    + GDS+DNIPG+PG+G KTA   L  YG++EN+L N   +K  K +E I  
Sbjct: 177 PEQVIDYLGMMGDSVDNIPGLPGVGEKTAKKFLATYGSMENLLDNTHELKG-KMKEKIEA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E   LS+KL  +  DVP+    +   L+  + P++    + LEF +L + +  T+   
Sbjct: 236 NKELGLLSKKLARIMLDVPVDFNEKEYELDQPDLPKVTEIFEELEFRRLADNLIKTF--- 292

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                        +E        +  + +T    QFS      S   ++        + L
Sbjct: 293 ------ATETTTNSETNTEKSSKKTAKTSTAGAGQFSLFGGGGSASATQ------VQQEL 340

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +     ++ ++Q L    S  F   T  ++   ++ + IA S   
Sbjct: 341 SSRKTSKDIPHIYQSVAPGMAMKLFLQNLMKQTSVCFDTETTGLNPLTAELVGIAFSWEA 400

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K          +I       Q         +E++  L+ FFE+E   KIG N+KYD  V
Sbjct: 401 SKG--------FYIPFPEDQDQ--------AQELIEQLRPFFEDEKIEKIGQNLKYDIKV 444

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPI 530
           L +Y + ++G + D ML  Y+++     H++  +A+ +L+Y      + I K  K+ + +
Sbjct: 445 LRKYNLIIKGAYFDTMLAHYLINPDM-RHNMDVLAETYLNYTPISITELIGKKGKNQLSM 503

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            ++   +  E+A+E++++  QL    +P+L   K   ++  ++ P++ V++ ME+ GI +
Sbjct: 504 RQVPIEKQTEYAVEDADITYQLASHFKPELKDAKTEELFNDIEIPLLSVLADMELEGINL 563

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D D L  +S E++ ++ +LE +IY+ +GE+FN++SPKQLG+ILF KLK      KTKTGQ
Sbjct: 564 DVDFLNSLSEELNTDIKNLETSIYEAAGEEFNIASPKQLGEILFGKLKLVDKPKKTKTGQ 623

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  TA+D+      D+ IIKNILE+R L+K+KSTY D+LP+ + + T RVHT Y      
Sbjct: 624 YS-TAEDVLSYLAQDHEIIKNILEYRGLAKLKSTYIDALPDQVEESTGRVHTDYMQTVAA 682

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A ++  T + 
Sbjct: 683 TGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENYTLLAADYSQIELRIIAALSDETTMI 742

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+N  DIH   A+++F V +++V+ + R +AKT+NF IIYG+S F L+ Q  + R E+
Sbjct: 743 EAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGES 802

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  Y+  +P + +Y+ +  +F R NGYV+T+ GRR +  +INS  + +R+  ER A+
Sbjct: 803 KELIDAYYETYPKLKKYMSELVDFARDNGYVQTVLGRRRYLKDINSRNAVVRSAAERNAV 862

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI++HK L      TKMLLQ+HDELVF+  + E+     +I   M
Sbjct: 863 NAPIQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVHDELVFDAHKTELEEVRALIKTEM 922

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A     +L VPL V I   +NW   +
Sbjct: 923 ENA----YSLAVPLDVEIGTGDNWLVAH 946


>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
 gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
          Length = 920

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/982 (33%), Positives = 531/982 (54%), Gaps = 75/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    GL  +A+ GFCN L ++L   +     +H  V 
Sbjct: 3   KLFLIDAYALIYRSYYAFIKSPRINSKGLNTSAVMGFCNTLNEVLTKEK----PTHIGVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   TFR++ +P+YKA R + PE +   +PL++   +A  IP +++ GFEADDII T 
Sbjct: 59  FDH-GKTFRHDAFPEYKAQREETPEDIKLSVPLIKQVLEAMHIPILQVDGFEADDIIGTI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGI-PPEKMV 180
                 +G    +++ DKD  QL+ P   +Y        E +  + V +K+GI  P +++
Sbjct: 118 ATRFGADGIDTFMLTPDKDYGQLIGPNVFMYRPRHGGGYEILGEKEVGEKYGIPTPAQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GDS DN PG PG+G KTAA L+ ++G+++N+L +   IK  K RE +    E  
Sbjct: 178 DLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNMLQHTDEIKG-KLREKVENAVEDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S+ L  +RTDVP+ + L+ L +E  +  +L +  + LEF  LIN+     +       
Sbjct: 237 KMSKFLATIRTDVPMQLDLDELKVEQPDETKLRAIFEELEFKTLINKFLNKAESKPKT-- 294

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                       +Q    ++ T+  N    P+    E ++    
Sbjct: 295 --------------------------DNNQLDLFAENTT--NESDEPKNAKFESIK---- 322

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + N ++++Q      T  S S    T + DA  ++ + ++ S  ++K   
Sbjct: 323 --TTQHEYKLVENEEELRQLCDFFITKESVSIDTETTSTDAISAELVGLSFSV-EEKKAF 379

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              V   +                   +I+   K  +E++  +KIG NIKYD  VL RYG
Sbjct: 380 YVAVPANYE---------------EALKIVQIFKPLYESDKIMKIGQNIKYDYEVLTRYG 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           ++++G   D M+  Y++      H++  +A+  L Y     +E+L    K    +  +S 
Sbjct: 425 VTLQGKMFDTMIAHYLIQPELH-HNMDYMAETLLGYQTIHIEELLGPKGKKQKNMRDLSP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + E+A E++++ L+L  +L P+L    +  ++  ++ P++ V++ ME+ G+ +D + L
Sbjct: 484 TDIYEYAAEDADITLRLKNVLEPRLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTA 654
           +  S   ++ +   E+ IY  +GE+FN+SSPKQ+GDILF KL+      KTKTGQ+  T+
Sbjct: 544 QDTSKIFTERMKQYEQEIYKEAGEEFNISSPKQVGDILFGKLQIMDKPKKTKTGQY-VTS 602

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +++ Q     +PI++NIL +R + K+ STY D+LP  IN RT  +HT ++ A T TGRL+
Sbjct: 603 EEVLQSLESKSPIVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH+++   + + F   
Sbjct: 663 SSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAFREG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA+I+ V+I+KV+   R+ AK  NF IIYGI+ + LA ++ IP  EA + I+ 
Sbjct: 723 HDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIEG 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP +  Y+E  K   R  GY ET+F RR +  +INS  +++R   ER AINAPIQG
Sbjct: 783 YFRTFPKVQVYMEHAKEVARAKGYAETLFHRRRYLADINSRNATVRGFAERNAINAPIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AM+ + +  +   + +KM+LQ+HDEL F V  EE     +I++  M+ A   
Sbjct: 843 TEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEEREQVERIVIEEMQNA--- 899

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL  +     NW E +
Sbjct: 900 -YPLNVPLIADAGWGKNWLEAH 920


>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
 gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
          Length = 921

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/977 (34%), Positives = 536/977 (54%), Gaps = 62/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAFHALPPLTT-STGLHTNAIRGASSAIQKLMRRTQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKALGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  A  EG  V I + DKD+ QLV+P   L D+ KE  +D   V++K+G+ P +++    
Sbjct: 117 TKRALSEGHHVLISTGDKDMAQLVNPHVKLEDSFKERVLDEAGVLEKFGVHPHQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG+L+NI+ N  ++K  K  +NI +  +  ++  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGSLDNIIANVDQLKG-KISQNIKDNLDNIKIDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+ + +    L L + N  +L      LEF   +  +    + +    +    
Sbjct: 236 QLASIVCDLDLALDWHDLKLSNPNINQLRDLYTELEFRNQLQSLDHPNNPNTPAYQQTSQ 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            I  +E K   +  E   + + +  Q                                  
Sbjct: 296 SIVKSEQKTEQVIAEDHANLSSQDDQLG-------------------------------- 323

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           + +Y  ++   D    +Q+++     +    T  +D   ++ +  +++  D  D     V
Sbjct: 324 DATYHTVLTQADWATLLQRMQQADHFAIDTETTNLDYRIAELVGFSVAF-DAHDAYYVPV 382

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         +   +    + +L  +K   ENE   KIGH++KYD  +   +GI+++
Sbjct: 383 AHDY---------EGAPEQLNREHVLEQIKPILENEQVKKIGHHLKYDAHIFANHGITIQ 433

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 434 GWYFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKSFNQIELEVAAH 493

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L+++   ++ P+  V++ ME  GI++D   L Q+S
Sbjct: 494 YAAEDAHVTYRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLS 553

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E S+ + +LE    +L+GE FN++SPKQ+G++LF +L    G KT TGQ+ T+   LE+
Sbjct: 554 VEFSETMQTLENQATELAGEAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEK 613

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+K+TY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 614 I---EHPLAEVILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSYHQALTATGRLSSTDPN 670

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T +G++IRRAFI+P  + L++ADYSQIELR++AH ++   L   F+   D+HR
Sbjct: 671 LQNIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQQGQDVHR 730

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++IE V+   RR AK +NF ++YG+S F L  QL   R E+  YI RYF R+
Sbjct: 731 RTAAEVLGIDIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESRSYIARYFQRY 790

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +Y+E+T+   R+ G+VETI GRR++  +I +    I+   ERAAINAP+QGSAADI
Sbjct: 791 PGVLDYMERTRQIAREQGFVETILGRRLYTPDILANNKMIKQAAERAAINAPLQGSAADI 850

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V K L   +   K+LLQ+HDELVFE  E      S+ I   M+      +++ 
Sbjct: 851 IKLAMIAVDKILPKDQ--AKLLLQVHDELVFEADETIADELSKQIAEVMQSV----LDIS 904

Query: 960 VPLKVNIKVSNNWQEEN 976
           VP  V +    NW   +
Sbjct: 905 VPFVVEVGQGQNWDAAH 921


>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
          Length = 924

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/984 (34%), Positives = 526/984 (53%), Gaps = 75/984 (7%)

Query: 6   HLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  +  YRA Y   + PL++ K  G   +A  GF   L KL++    E    + A
Sbjct: 3   RLYLIDAMALAYRAQYVFISRPLVNSK--GQNTSAAYGFTTSLLKLIE----EHGMDYMA 56

Query: 63  VIFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           V+FD      TFR  IY +YKA+R   PE LL  LP ++   +A  IP IE  G EADD+
Sbjct: 57  VVFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP 176
           I T    AE  G  V I+S DKD +QL+SP   +Y   +  +    I IE   + +G+ P
Sbjct: 117 IGTLARRAEAHGIDVVIVSPDKDFLQLLSPHVSIYKPARRGETFDLITIETFRETYGLEP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + + AL GD  DN+PG+PGIG KTA  L+Q+YG++EN+L +A  +K K+ RE +L +
Sbjct: 177 HQFIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLNH 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS++LV +RTDVP+ I  E       + PRL+   + LEF  L+ R+        
Sbjct: 237 REEALLSKRLVTIRTDVPLRIRWEAFHRARPDLPRLLQIFQELEFDSLVRRIREGGLAGI 296

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N E  +                                D+  +  +E        E LQ
Sbjct: 297 VNGEAAL--------------------------------DEALEAETEPEFDFGPYEPLQ 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                  +   Y  + N + + + V  L+     +    T + +A  +  + IA S    
Sbjct: 325 VYDPEKAD---YRIVRNRQQLDELVAHLDGFERLAIDTETTSTEAMWASLVGIAFSWEKG 381

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         +   L            T T+ +L  L          K+G N+KYD +VL
Sbjct: 382 QGYY------VPTPLP---------DGTPTETVLERLAPILRR-AQRKVGQNLKYDLVVL 425

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            R+G+ +   + D M+  Y++      H++  +A+++L Y      E++ S +    +  
Sbjct: 426 ARHGVQVPPPYFDTMVAHYLIAP-EEPHNLDVLARQYLRYQMVSITELIGSGRDQKSMRD 484

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +S  +V  +A E++++ LQL  +L  +L    L H+ E ++ P+I+V++ ME TGI ID+
Sbjct: 485 VSIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDR 544

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L+++  ++   L  LE  IY+++G +FN+ SP+QL D+LF KL     A+T TG+   
Sbjct: 545 AVLREIGKQLEAELHELEVKIYEVAGVEFNIGSPQQLADVLFKKLGLKPRARTSTGRPS- 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T + + Q     +P+   IL+WR L+K+KSTY D L   I+  T R+HT ++   T TGR
Sbjct: 604 TKESVLQELATQHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGR 663

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIP++T++G++IRRAF+  P  KL+SADY QIELRILA ++    L + F 
Sbjct: 664 LSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFL 723

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AA +F V  E+V+P+ RR AK +N+ I YGIS + LA +LR    EA + I
Sbjct: 724 EGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQELI 783

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + Y   FPG+  Y+ +     RQ GYVET+ GRR +   INS   + R++ ER A+N PI
Sbjct: 784 EEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMPI 843

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+ AD+ + AM+ ++  L+      KMLLQ+HDELVFE+P EE+    Q++   M++A 
Sbjct: 844 QGTQADMIKLAMVHIYHRLKREGYRAKMLLQVHDELVFEMPPEEVEPVRQLVEQEMKQAL 903

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
             +    VP++V+I V +NW + +
Sbjct: 904 PLEG---VPIEVDIGVGDNWLDAH 924


>gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7]
          Length = 921

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/991 (34%), Positives = 527/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G   + +  N  ++        K     + E+ E
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIRGAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +   L+     LEF   I  +          
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDTLMELYAELEFKSWIEDLQR-------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                      ++++  Q+L +E     
Sbjct: 292 -------------------------------------------DAKRAGQELTVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVEAREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+   +K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPEKIKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS    HD  S+  K+L++     +EI      
Sbjct: 415 CAIDGDQAQGIDLQGVRFDTILESYVLDSTAPRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPVLSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
 gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
          Length = 904

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/977 (34%), Positives = 528/977 (54%), Gaps = 78/977 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+ + + E    + A 
Sbjct: 2   KKTLLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVINMLRKLVLDHKAE----YAAC 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++IYP+YKA+RP +PE L  Q+  +  A +A G P + ++G EADD+IAT
Sbjct: 57  VFDARGGTFRDDIYPEYKAHRPSMPEDLAAQVEPIHAAIRALGWPVLAVEGVEADDVIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G    + + DKDL QLV+P   L +T+  E +D   V+ K+G+P +++V   
Sbjct: 117 LARRATEAGLHTIVSTGDKDLAQLVNPQVTLVNTMTGEVLDETGVVNKFGVPADRIVDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTA   L E+G++E+++ NA  IK      N+ E      ++
Sbjct: 177 MLVGDTVDNVPGVTKVGPKTAVKWLSEFGSIEHLIQNADGIKG-VAGNNLREAIPNFPMT 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+L+ ++ D                   L +FL +LE  K                    
Sbjct: 236 RQLLTVKDDCD-----------------LSAFLTSLEDLK-------------------- 258

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                         TE+DRDT  +            +++ +         R+ +++    
Sbjct: 259 -------------PTELDRDTLNRLYDRYGFRTWLRELSGDAERVPAGDARVAEVAHAAP 305

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I        W+ + E     +    T ++D   ++ + ++++           
Sbjct: 306 VEQQYQIITEWPAFDAWMARAEATPLVALDTETTSLDEMQARLVGLSMAVEPGV------ 359

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I L+    +   G     +E+L  L+ + E+    K+ H+ KYD  V    GI++
Sbjct: 360 --ACYIPLAHRGPE--AGTQLPKQEVLERLRGWLEDATRSKLLHHAKYDTHVFANEGIAL 415

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQ 539
           RG  ED ML +YVL+S R    +  +AQ++L       +++       I  D+++  +  
Sbjct: 416 RGVTEDTMLQAYVLESHRGV-GLNDLAQRYLGRSGVNYEDLCGKGAKQIGFDEVAVDRAG 474

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++  LQL   LRP +  E  L    +L+  +  V+  +E  G+++D + L + S
Sbjct: 475 FYAAEDADFTLQLHQALRPGVTGE--LERIYKLELEVSRVLVAIERNGVKVDAEELGRQS 532

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + +L+LE+  Y+L+G+ FNL+SPKQLG+ILF ++  P   KT  G   T  + L +
Sbjct: 533 HELGREMLALEQRAYELAGQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSK 592

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D P+ + +LE+R LSK+KSTY D LP  IN  T RVHT YS A+ +TGRLAS +PN
Sbjct: 593 L-AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPN 651

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T  G+++R AF++     L+SADYSQIELRI+AH++    L + F    DIHR
Sbjct: 652 LQNIPVRTLAGRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDANLQRAFAAGEDIHR 711

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FGV + +V+ + RR AK INF +IYG+  F LA+ L I R  A  YI RYF R+
Sbjct: 712 ATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARY 771

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+  Y++ T+   R+ GYVET+FGRR+   +I +     R   ERAAINAP+QG+AAD+
Sbjct: 772 PGVARYMDDTRRLAREQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADL 831

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++V   L   +L+ ++++Q+HDELV EVP  E+    + +   M +       LR
Sbjct: 832 IKMAMVAVQDWLVSQRLSARLIMQVHDELVLEVPAVELDLVRETVPRLMSEVAA----LR 887

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL   + V +NW++ +
Sbjct: 888 VPLIAEVGVGHNWEQAH 904


>gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6]
 gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
          Length = 949

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/987 (33%), Positives = 526/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M+ +N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        S
Sbjct: 1   MESDNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PS 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++    A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLV+    +Y        E + IE V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVTNNVFMYRPKHTGGFEVMGIEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E  +   L    + LEF  LI+RV    +  
Sbjct: 236 NKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENSA 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                       T ++    +    +    I+   F++ +      N     +K  LE L
Sbjct: 296 GGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTG-----NEAGEAKKSNLETL 350

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + L      N  Y  I   K   + +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 351 ETL------NCDYQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  ++ +  +  +          +I++  +  FENE+ LK+G NIKYD +V
Sbjct: 405 N--------QAFYVPVPDNREE--------ALKIVNEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG+ ++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LENYGVQVKGALFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    +  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDIYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ S   +  +  +E+ IY+L+GE FN++SPKQ+G++LF KL+      KTKTGQ
Sbjct: 568 DTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTS 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +P +  Y+EK+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      + VPLK +     NW E +
Sbjct: 927 HA----YRMHVPLKADCGWGKNWLEAH 949


>gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319]
 gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319]
          Length = 920

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/982 (33%), Positives = 527/982 (53%), Gaps = 75/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + I+R++YA     R    GL  +AI GFCN L ++L   +     +H AV 
Sbjct: 3   KLFLLDAYALIFRSYYALIRSPRINSKGLNTSAIMGFCNTLNEVLTKEK----PTHIAVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   TFR++ YP YKA R + PE +   +PL++   +A  IP +++ GFEADDII T 
Sbjct: 59  FDH-GKTFRHDAYPQYKAQREETPEDIKLSVPLIKQILEALHIPILQVDGFEADDIIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGI-PPEKMV 180
                 +G    +++ DKD  QL+ P   +Y        E +  + V  K+GI  P +++
Sbjct: 118 ATRFGADGIETFMLTPDKDYGQLIGPNVYMYRPKHGGGYETLGEKEVESKYGIPTPAQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD+ DN PG PG+G KTAA L+ ++G+++N+L +   IK  K RE +    E  
Sbjct: 178 DILALMGDTADNFPGCPGVGEKTAAKLISQFGSIDNMLAHTDEIKG-KLREKVEAAVEDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S+ L  +RTDVPI + L+ + ++  +  +L +  + LEF  LIN+             
Sbjct: 237 KISKFLATIRTDVPIQLELDDMKVQQPDEEKLRAIFEELEFKTLINKFLN---------- 286

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                     K  + S + +    + +E TP      +      
Sbjct: 287 --------------------------KDKEKSKVVENQLDLFAEFTPDTPSEAKKASFES 320

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  I N  D+ +  +   T  + S    T + DA  ++ + ++ S  +++   
Sbjct: 321 LKTTQHNYQLIDNEADLHRLCELFLTKKTLSLDTETTSTDAISAELVGLSFSVEEKE--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +  +  +          + ++  K  +ENE  LK+G NIKYD  VL  YG
Sbjct: 378 -----AYYVPIPENREE--------ALKRVAIFKPVYENESILKVGQNIKYDYEVLSNYG 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           + ++G   D M+  Y++      H++  +A+  L Y     +E+L    K    +  +S 
Sbjct: 425 VKLKGAMFDTMIAHYLIQP-ELRHNMDYMAETLLGYQTIHIEELLGSKGKKQKNMRDLSP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + E+A E++++ L+L  +L PKL    +  ++  ++ P++ V++ ME+TG++ID + L
Sbjct: 484 TDIYEYAAEDADITLRLKNVLAPKLKELNVEELFWSIEMPLVRVLADMELTGVRIDTEAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTA 654
           K+ S   ++ +   E  I+  +GE+FN+SSPKQ+GDILF K++      KTKTGQ+  T+
Sbjct: 544 KETSKIFTERMRQYEVKIFKEAGEEFNISSPKQVGDILFGKMQILDKPKKTKTGQY-VTS 602

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +++ Q     +PI++NIL +R + K+ STY ++LP  IN RT  +HT ++ A T TGRL+
Sbjct: 603 EEVLQSIESKHPIVRNILNYRGMKKLLSTYVEALPKLINSRTGHIHTSFNQALTATGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH+++   + + F   
Sbjct: 663 SSDPNLQNIPVRTDDGKEIRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDNMMEAFREG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA+I+   ++ V+   R+ AK  NF IIYGI+ F LA ++ IP +EA   I+ 
Sbjct: 723 YDIHRATAAKIWHEALDDVTDAQRKKAKQANFGIIYGITTFGLAQRMEIPNNEARALIQD 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP +  Y+E  K   R  GY ET+F RR +   INS   +IR  +ER AINAPIQG
Sbjct: 783 YFRTFPKVQAYMEHAKELARSKGYAETLFHRRRYLPNINSRNGTIRGFDERNAINAPIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AM+ +    ++  + +KM+LQ+HDEL F V  +E     +I++  M+ A   
Sbjct: 843 TEADIIKVAMVRIWNRFKEEGIRSKMILQVHDELNFSVYPDEREKVEKIVLEEMQNA--- 899

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL  +     NW E +
Sbjct: 900 -YPLNVPLIADAGWGKNWLEAH 920


>gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 939

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/994 (34%), Positives = 518/994 (52%), Gaps = 73/994 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M     L LVDGSS++YRA++A    +    DG P  A+ G  NML +L    R E    
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMLRQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHD 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD
Sbjct: 57  YCAVVFDAKGKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLTGWPVLVIGQVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T        G  V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++
Sbjct: 117 VIGTLAKQGVGHGLQVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               ALTGD +DN+PG+   G KTA   L+ YG+L+ ++ +AS IK  K  EN+      
Sbjct: 177 RDYLALTGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIKG-KVGENLRAALPR 235

Query: 240 ARLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             LS  LV ++TDV +    +  LE L        +L    K   F   +          
Sbjct: 236 LPLSYDLVTIKTDVDLHAELSDGLESLRRTTPKWAQLAVDFKRWGFRTWLK--------- 286

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                E E             S +       + + P +   E+ 
Sbjct: 287 ---------------------EAESRMHEAADGGLSGSDAIGGKAAPAAEMPSERLPEKA 325

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +         + KL           T ++DA ++  + I+I+   
Sbjct: 326 -----VAPEKLDYQAVTTEAQFAALLDKLSQAEKIGIDTETTSLDAMNASLVGISIAFQA 380

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +         ++I +    +  +  +    + +L  LK   EN    KIG N+KYD+ V
Sbjct: 381 GE--------AVYIPVGHSLT--AAPEQLDLQYVLDRLKPHLENPALKKIGQNLKYDQHV 430

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPID 531
              YGI++ G   D ML SY+++S    H +  ++ +WL     T + +       I   
Sbjct: 431 FANYGIALNGIVGDAMLASYIIESHLG-HGLDELSGRWLGLETITYESLCGKGAKQIGFA 489

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            ++     E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+ +ME  G+QID
Sbjct: 490 DVAIGPATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVLFEMERVGVQID 548

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQ 649
           +  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G 
Sbjct: 549 RAELARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGG 608

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R +RVHT Y+ A  +
Sbjct: 609 ISTNEDVLEQL-APDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAI 667

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLA   PNLQNIPI+T+ G+K+RRAF +PP   ++SADYSQIELRI+AH++    L  
Sbjct: 668 TGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 727

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+N  D+HR  AAE+FG+  E VSP+ RR+AKTINF +IYG+  + LA  L I    A 
Sbjct: 728 AFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAK 787

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I RYF R+PG+ EY+++ +      GYVET+FGRR++  +I    ++IR   ERAAIN
Sbjct: 788 NFIDRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNANIRARAERAAIN 847

Query: 890 APIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQ 942
           AP+QG+A+D+ +RAMI V + L + +       L +K+++Q+HDELV EVPE E+    +
Sbjct: 848 APMQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQVHDELVLEVPEAELDLVKE 907

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +   M  A +    L VPL   +    NW+E +
Sbjct: 908 KLPQMM--AAVDDGMLDVPLVAEVGAGMNWEEAH 939


>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
 gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
          Length = 980

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/990 (34%), Positives = 531/990 (53%), Gaps = 56/990 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  +FLVD  + I+R +YA    P ++ K  GL  +AI GF N L  +++  + +  
Sbjct: 33  MSDQKRVFLVDAFALIFRGYYAFIKNPQINSK--GLDTSAIMGFMNSLLDVIKREKPD-- 88

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             H AV FD      R E++  YKANR + PE +   +P ++   +A  IP +   GFEA
Sbjct: 89  --HLAVCFDKGGSVDRVEMFEAYKANRDETPEAIKIAVPYIQEILKAMHIPIMVKAGFEA 146

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGI 174
           DD+I T +  AEKEG+   +++ DKD  QLVS    +Y        DI     V +K+G+
Sbjct: 147 DDVIGTLSKQAEKEGYKTFMVTPDKDFAQLVSDNIFMYKPRFGGGYDIWGVPEVQEKFGV 206

Query: 175 PPE-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
               +++    + GDS DNIPG+PG+G KTA   L  YG +EN+L N   +K  K RE +
Sbjct: 207 TDPLQVIDFLGMMGDSADNIPGLPGVGEKTAKKFLTTYGTMENLLANTHELKG-KMREKV 265

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               +   LS+KL  +  DVP+T   +   L+  + P++      LEF  L+     T+ 
Sbjct: 266 EAAKDLGLLSKKLATIMLDVPVTFNAKDFELDQPDMPKVTELFNELEFRNLLKNFTKTFA 325

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            D A  E      N +E K   I+    ++T I   QF   +   +   SE+       E
Sbjct: 326 IDTA--EETGASKNGSEEK---IKATPKKETLIPEGQFDLFAAPGTGSVSEE-------E 373

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                      N  Y  I +       ++ L    +  F   T  + A   + I IA S 
Sbjct: 374 IASGFKTISTTNHFYQHIDSPFARTLLLRNLMKQTAVCFDTETTGLKALEVELIGIAFSY 433

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              K                            T+ IL   + FFE+E   KIGHN+KYD 
Sbjct: 434 ETGKGY----------------YVSFPEDQAETQRILEDFRPFFESE-IEKIGHNLKYDI 476

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRKSSI 528
            VL  Y + ++G   D M+  Y+++     H++  +A+ +L+Y      + I K  K+ +
Sbjct: 477 KVLSTYKMPVKGKLFDTMIAHYLINPDM-RHNMDVLAETYLNYQPISIAELIGKKGKNQL 535

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +   +  E+A+E++++  QL  L   +L    +  ++  ++ P++ V++ MEI GI
Sbjct: 536 SMRSVPLKEQTEYAVEDADITFQLKQLFTGELENGNVTKLFNDIELPLVSVLTAMEIEGI 595

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
            ++ D LK++S  ++ ++  LE++IY+ +GE+FN++SPKQLG +LF K++      KTKT
Sbjct: 596 NVNTDFLKELSVALTADIDRLEKSIYEQAGEEFNIASPKQLGIVLFEKMELVKKPKKTKT 655

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+  T +D+      ++ IIK+I E+RQ  K++STY D+LPN +N +T R+HT Y  A 
Sbjct: 656 GQY-ATGEDILSYLAKEHDIIKDIQEYRQYKKLQSTYVDALPNEVNPKTGRIHTQYMQAV 714

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITP 766
             TGRL+S  PNLQNIPI+T  G+++R+AF+       L++ADYSQIELRI+A +++   
Sbjct: 715 AATGRLSSNNPNLQNIPIRTARGREVRKAFVPRDENHVLLAADYSQIELRIIAALSEEEN 774

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           +   F+N  DIH   AA++F V + +V+   R +AKT+NF I+YG+S F L+ Q  + RS
Sbjct: 775 MINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVYGVSAFGLSNQTDLSRS 834

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA + I  Y+  +P +  Y+    +F R++GYVET+  RR +  +INS  + +RN  ER 
Sbjct: 835 EAKELIDTYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNAVVRNGAERN 894

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+NAPIQGSAADI + AMI++ K  E     ++MLLQ+HDELVF+  ++E+     II +
Sbjct: 895 AVNAPIQGSAADIIKLAMINIQKRFEKEGFRSRMLLQVHDELVFDTHKDELEIIKPIIKY 954

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME A      + VPL V + +  NW E +
Sbjct: 955 EMEHA----FKMSVPLDVEVGIGENWLEAH 980


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/987 (33%), Positives = 525/987 (53%), Gaps = 75/987 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            +   LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +H
Sbjct: 8   TRMEKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLRKEN----PTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD    TFR+E Y  YKA R + PE +   +P+++   +A+ IP +EI G+EADD+
Sbjct: 64  IGIAFDPSGPTFRHEAYEAYKAQREETPEAIRQSVPVIKDIIRAYHIPILEIAGYEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A K G    +++ DKD  QLV     +Y         E + +E V  K+ I  
Sbjct: 124 IGTLATEAGKRGINTYMMTPDKDYGQLVGEHVFMYRPKYGDKDFEVMGVEEVKAKFDIQS 183

Query: 177 E-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++ +  L GD+ DNIPG PG+G KTA  L+ ++G++EN+L +   +K    ++ + E
Sbjct: 184 PLQVIDMLGLMGDTADNIPGCPGVGEKTAQKLIAQFGSIENLLAHTDELKGA-IKKKVEE 242

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++TDVPIT+ +E L  E+ +   L    + LEF  LI+RV  T    
Sbjct: 243 NKEQITFSKFLATIKTDVPITLDMEALKREEPDEEELRRLFEMLEFRSLIDRVIKT---- 298

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                E +       +   F   +++ +        +   L RL
Sbjct: 299 ---------------------EKKAPSSPAAQPDLFGFFAEEDTAD-----AKNSILTRL 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + LS        Y  + N + +    +KL      S    T  +D   ++ + ++ S  +
Sbjct: 333 EDLSY------DYQLVDNKEKMAVLAEKLLAQKFFSLDTETTGIDPITAELVGMSFSFAE 386

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  ++ +  +  +  T        I++  K  FEN   LKIG NIKYD ++
Sbjct: 387 N--------QAFYVPVPANREEALT--------IVNIFKPAFENPDSLKIGQNIKYDLIM 430

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG++++G   D M+  YVL      H +  +A+ +L Y     +E++    K    +
Sbjct: 431 LANYGVTLKGKMFDTMIAHYVLQP-ELRHGMDYLAEIYLKYETIKIEELIGAKGKKQGNM 489

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++   V ++A E+++V L+L  +L  +L    +  ++E ++ P++ V++ ME  G++I
Sbjct: 490 RDLAPEAVYKYACEDADVTLKLKQVLENELETNGVKKLFEEIEMPLVPVLAYMERNGVRI 549

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LK+ S   +  +  +EE ++ L+G +FN++SPKQ+G++LF +LK      KTKTGQ
Sbjct: 550 DTEALKETSRHFTARMNQIEEEVHQLAGMEFNIASPKQVGEVLFDRLKIVEKAKKTKTGQ 609

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +  G + I+  ILE R L K+  TY D+LP  IN  T R+HT ++   T 
Sbjct: 610 YVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPQLINPATGRIHTSFNQTVTA 668

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI     +  SADYSQIELRI+AH++    + +
Sbjct: 669 TGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIE 728

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   DIH   AA+I+ V +E+V+ + R  AKT NF IIYGIS F LA +L + R EA 
Sbjct: 729 AFQKDQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGIIYGISVFGLAERLNVDRKEAK 788

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I  YF  +P +  Y++++    R+ GY+ETIF R+ +  +INS  + +R   ER AIN
Sbjct: 789 ALIDGYFENYPNVKAYMDQSIQEAREKGYIETIFKRKRYLPDINSKNAVVRGYAERNAIN 848

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AMI +++  ++  + +KM+LQ+HDEL F V  EE     QI++  ME
Sbjct: 849 APIQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELNFSVLPEEKEKVQQIVISEME 908

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      ++ PL+ +    +NW E +
Sbjct: 909 AA----YKMKAPLRADHGWGHNWLEAH 931


>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
 gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
          Length = 949

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/987 (33%), Positives = 526/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M+ +N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        S
Sbjct: 1   MESDNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PS 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++    A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLV+    +Y        E + IE V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVTNNVFMYRPKHTGGFEVMGIEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GD+ DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E  +   L    + LEF  LI+RV    +  
Sbjct: 236 NKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRRIFEELEFRTLIDRVLKKENSA 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                       T ++    +    +    I+   F++ +      N     +K  LE L
Sbjct: 296 GGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTG-----NEAGEAKKSNLETL 350

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + L      N  Y  I   K   + +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 351 ETL------NCDYQLIDTEKKRTEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  ++ +  +  +          +I++  +  FENE+ LK+G NIKYD +V
Sbjct: 405 N--------QAFYVPVPDNREE--------ALKIVNEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG+ ++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LENYGVQVKGALFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    +  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDIYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ S   +  +  +E+ IY+L+GE FN++SPKQ+G++LF KL+      KTKTGQ
Sbjct: 568 DTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTS 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +P +  Y+EK+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      + VPLK +     NW E +
Sbjct: 927 HA----YRMHVPLKADCGWGKNWLEAH 949


>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
 gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
          Length = 949

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/987 (33%), Positives = 525/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MDSGNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDISG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     + T ++    +    +    ++   F++            TP +    + 
Sbjct: 296 NGITSATGSKVATGKSTPSPLPLFPEEGGGMQGDLFANF-----------TPDEPGEAKK 344

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L        +Y  +   +  Q+ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 345 SNLETLESLTYNYQLVDTEEKRQEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSIAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +                +I++  +  FENE+ LK+G NIKYD +V
Sbjct: 405 NE--------AFYVPVPS--------DQDEALKIVNEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG +++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK      KTKTGQ
Sbjct: 568 DTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           KA      + VPLK +     NW E +
Sbjct: 927 KA----YRMHVPLKADCGWGKNWLEAH 949


>gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640]
 gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06]
          Length = 932

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/987 (34%), Positives = 517/987 (52%), Gaps = 66/987 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M     L LVDGSS++YRA++A    +    DG P  A+ G  NML +L    R E    
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMLRQNLTAPDGAPTGALYGVLNMLRRL----RLEYPHD 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + +   EADD
Sbjct: 57  YCAVVFDAKGKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLTGWPVLVVGQVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T        G  V + + DKD+ QLV+    L +T+  E +DIE V +K+G+ P+++
Sbjct: 117 VIGTLAKQGVGHGLQVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               ALTGD +DN+PG+   G KTA   L+ YG+L+ ++ +A+ IK  K  EN+      
Sbjct: 177 RDYLALTGDKVDNVPGVEKCGPKTAEKWLEAYGSLQGVMEHAAEIKG-KVGENLRAALPR 235

Query: 240 ARLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             LS  LV ++TDV +    +  LE L        +L+   K   F   +          
Sbjct: 236 LPLSYDLVTIKTDVDLHAELSDGLESLRRTAPKWAQLVVDFKRWGFRTWLK--------- 286

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                E E             S +       + + P +   E+ 
Sbjct: 287 ---------------------EAESRMHEAADGGLSGSDAIGGQATPAAEMPSERLPEKA 325

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +         + KL           T ++DA ++ P+ I+I+   
Sbjct: 326 -----VAPEKLDYQAVTTEAQFAALLDKLSQAEKIGIDTETTSLDAMNAAPVGISIAFQA 380

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +         ++I +    +  +  +    + +L  LK   EN    KIG N+KYD+ V
Sbjct: 381 GE--------AVYIPVGHSLT--AAPEQLDLQYVLDRLKPHLENPALKKIGQNLKYDQHV 430

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPID 531
               GI++ G   D ML SY+++S    H +  ++ +WL     T + +       I   
Sbjct: 431 FANCGIALNGIVGDAMLASYIIESHLG-HGLDELSGRWLGLETITYESLCGKGAKQIGFA 489

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            ++     E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+ +ME  G+QID
Sbjct: 490 DVAIGPATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVLFEMERVGVQID 548

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQ 649
           +  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G 
Sbjct: 549 RAELARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGG 608

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R +RVHT Y+ A  +
Sbjct: 609 ISTNEDVLEQL-APDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAI 667

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLA   PNLQNIPI+T+ G+K+RRAF +PP   ++SADYSQIELRI+AH++    L  
Sbjct: 668 TGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 727

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A 
Sbjct: 728 AFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAK 787

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I RYF R+PG+ EY+++ +      GYVET+FGRR++  +I    ++IR   ERAAIN
Sbjct: 788 NFIDRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLSDIRHTNANIRARAERAAIN 847

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+A+D+ +RAMI V + L D  L +K+++Q+HDELV EVPE E+    + +   M 
Sbjct: 848 APMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQMM- 906

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A +    L VPL   +    NW+E +
Sbjct: 907 -AAVDDGMLDVPLVAEVGAGMNWEEAH 932


>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 921

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/977 (34%), Positives = 536/977 (54%), Gaps = 62/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAFHALPPLTT-STGLHTNAIRGASSAIQKLMRRTQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKALGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  A  EG  V I + DKD+ QLV+P   L D+ KE  +D   V++K+G+ P +++    
Sbjct: 117 TKRALSEGHHVLISTGDKDMAQLVNPHVKLEDSFKERVLDEAGVLEKFGVHPHQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG+L+NI+ N  ++K  K  +NI +  +  ++  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGSLDNIIANVDQLKG-KISQNIKDNLDNIKIDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+ + +    L L + N  +L      LEF   +  +    + +    +    
Sbjct: 236 QLASIVCDLDLALDWHDLKLSNPNINQLRDLYTELEFRNQLQSLDHPNNPNTPAYQQTSQ 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            I  +E K   +  E   + + +  Q                                  
Sbjct: 296 SIVKSEQKTEQVIAEDHANLSSQDDQLG-------------------------------- 323

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           + +Y  ++   D    +Q+++     +    T  +D   ++ +  +++  D  D     V
Sbjct: 324 DATYHTVLTQVDWATLLQRMQQADHFAIDTETTNLDYRIAELVGFSVAF-DAHDAYYVPV 382

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +         +   +    + +L  +K   ENE   KIGH++KYD  +   +GI+++
Sbjct: 383 AHDY---------EGAPEQLNREHVLEQIKPILENEQVKKIGHHLKYDAHIFANHGITIQ 433

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 434 GWYFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIELEVAAH 493

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L+++   ++ P+  V++ ME  GI++D   L Q+S
Sbjct: 494 YAAEDAHVTYRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLS 553

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E S+ + +LE    +L+GE FN++SPKQ+G++LF +L    G KT TGQ+ T+   LE+
Sbjct: 554 VEFSETMQTLENQATELAGEAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEK 613

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+K+TY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 614 I---EHPLAEVILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSYHQALTATGRLSSTDPN 670

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T +G++IRRAFI+P  + L++ADYSQIELR++AH ++   L   F+   D+HR
Sbjct: 671 LQNIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQQGQDVHR 730

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++IE V+   RR AK +NF ++YG+S F L  QL   R E+  YI RYF R+
Sbjct: 731 RTAAEVLGIDIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESRSYIARYFQRY 790

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +Y+E+T+   R+ G+VETI GRR++  +I +    I+   ERAAINAP+QGSAADI
Sbjct: 791 PGVLDYMERTRQIAREQGFVETILGRRLYTPDILANNKMIKQAAERAAINAPLQGSAADI 850

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V K L   +   K+LLQ+HDELVFE  E      S+ I   M+      +++ 
Sbjct: 851 IKLAMIAVDKILPKDQ--AKLLLQVHDELVFEADETITDELSKQIAEVMQSV----LDIS 904

Query: 960 VPLKVNIKVSNNWQEEN 976
           VP  V +    NW   +
Sbjct: 905 VPFVVEVGQGQNWDAAH 921


>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
          Length = 924

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/984 (34%), Positives = 526/984 (53%), Gaps = 75/984 (7%)

Query: 6   HLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+D  +  YRA Y   + PL++ K  G   +A  GF   L KL++    E    + A
Sbjct: 3   RLYLIDAMALAYRAHYVFISRPLVNSK--GQNTSAAYGFTTSLLKLIE----EHGMDYMA 56

Query: 63  VIFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           V+FD      TFR  IY +YKA+R   PE LL  LP ++   +A  IP IE  G EADD+
Sbjct: 57  VVFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP 176
           I T    AE  G  V I+S DKD +QL+SP   +Y   +  +    I IE   + +G+ P
Sbjct: 117 IGTLARRAEAHGIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLITIETFRETYGLEP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + + AL GD  DN+PG+PGIG KTA  L+Q+YG++EN+L +A  +K K+ RE +L +
Sbjct: 177 HQFIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLNH 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS++LV +RTDVP+ I  E       + PRL+   + LEF  L+ R+        
Sbjct: 237 REEALLSKRLVTIRTDVPLRIRWEAFHRARPDLPRLLQIFQELEFDSLVRRIREGGLAGI 296

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              E  +                                D+  +   E        E LQ
Sbjct: 297 VRREAAL--------------------------------DEALEAEGEPEFDFGPYEPLQ 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                  +   Y  + N + + + V +L+ +   +    T + +A  +  + IA S    
Sbjct: 325 VYDPEKAD---YRIVRNRQQLDELVARLDGLERLAIDTETTSTEAMWASLVGIAFSWEKG 381

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         +   L            T T+ +L  L          K+G N+KYD +VL
Sbjct: 382 QGYY------VPTPLP---------DGTPTETVLERLAPILRR-AQRKVGQNLKYDLVVL 425

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            ++G+ +   + D M+  Y++      H++  +A+++L Y      E++ S +    +  
Sbjct: 426 AQHGVEVPPPYFDTMVAHYLIAP-EEPHNLDVLARQYLRYQMVAITELIGSGRDQKSMRD 484

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +S  +V  +A E++++ LQL  +L  +L    L H+ E ++ P+I+V++ ME TGI ID+
Sbjct: 485 VSIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDR 544

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L+++  ++   L  LE  IY+++G +FN+ SP+QL D+LF KL     A+T TG+   
Sbjct: 545 TVLREIGKQLEAELHELEAKIYEVAGVEFNIGSPQQLADVLFKKLGLKPRARTSTGRPS- 603

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T + + Q     +P+   IL+WR L+K+KSTY D L   I+  T R+HT ++   T TGR
Sbjct: 604 TKESVLQELATQHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGR 663

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIP++T++G++IRRAF+  P  KL+SADY QIELRILA ++    L + F 
Sbjct: 664 LSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFL 723

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AA +F V  E+V+P+ RR AK +N+ I YGIS + LA +LR    EA + I
Sbjct: 724 EGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQELI 783

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + Y   FPG+  Y+ +     RQ GYVET+ GRR +   INS   + R++ ER A+N PI
Sbjct: 784 EEYQRAFPGVTRYLHRVVEKARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMPI 843

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+ AD+ + AM+ ++  L+      KMLLQ+HDELVFE+P EE+    Q++   M++A 
Sbjct: 844 QGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEMPPEEVEPVRQLVEQEMKQAL 903

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
             +    VP++V+I V +NW + +
Sbjct: 904 PREG---VPIEVDIGVGDNWLDAH 924


>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
 gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
          Length = 920

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/982 (33%), Positives = 531/982 (54%), Gaps = 75/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    GL  +A+ GFCN L ++L   +     +H  V 
Sbjct: 3   KLFLIDAYALIYRSYYAFIKSPRINSKGLNTSAVMGFCNTLNEVLTKEK----PTHIGVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   TFR++ +P+YKA R + PE +   +PL++   +A  IP +++ GFEADDII T 
Sbjct: 59  FDH-GKTFRHDAFPEYKAQREETPEDIKLSVPLIKQVLEAMHIPILQVYGFEADDIIGTI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGI-PPEKMV 180
                 +G    +++ DKD  QL+ P   +Y        E +  + V +K+GI  P +++
Sbjct: 118 ATRFGADGIDTFMLTPDKDYGQLIGPNVFMYRPRHGGGYEILGEKEVGEKYGISTPAQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GDS DN PG PG+G KTAA L+ ++G+++N+L +   IK  K RE +    E  
Sbjct: 178 DLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNMLQHTDEIKG-KLREKVENAVEDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S+ L  +RTDVP+ + L+ L +E  +  +L +  + LEF  LIN+     +       
Sbjct: 237 KMSKFLATIRTDVPMELDLDELKVEQPDETKLRAIFEELEFKTLINKFLNKDESKPKT-- 294

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                       +Q    ++ T+  N    P+    E ++    
Sbjct: 295 --------------------------DNNQLDLFAENTT--NESDEPKNAKFESIK---- 322

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + N ++++Q      T    S    T + DA  ++ + ++ S  ++K   
Sbjct: 323 --TTQHEYKLVENEEELRQLCDFFITKEFVSIDTETTSTDAISAELVGLSFSV-EEKKAF 379

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              V   +                   +I+   K  +E++  +KIG NIKYD  VL RYG
Sbjct: 380 YVAVPANYE---------------EALKIVQIFKPLYESDKIMKIGQNIKYDYEVLTRYG 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           ++++G   D M+  Y++      H++  +A+  LSY     +E+L    K    +  +S 
Sbjct: 425 VTLQGKMFDTMIAHYLIQPELH-HNMDYMAETLLSYQTIHIEELLGPKGKKQKNMRDLSP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + E+A E++++ L+L  +L P+L    +  ++  ++ P++ V++ ME+ G+ +D + L
Sbjct: 484 TDIYEYAAEDADITLRLKNVLEPRLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTA 654
           +  S   ++ +   E+ IY  +GE+FN+SSPKQ+GDILF KL+      KTKTGQ+  T+
Sbjct: 544 QDTSKIFTERMKQYEQEIYKEAGEEFNISSPKQVGDILFGKLQIMDKPKKTKTGQY-VTS 602

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +++ Q     +PI++NIL +R + K+ STY D+LP  IN RT  +HT ++ A T TGRL+
Sbjct: 603 EEVLQSLESKSPIVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++TD G++IR+ FI        SADYSQIELRI+AH+++   + + F   
Sbjct: 663 SSDPNLQNIPVRTDDGKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAFREG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA+I+ V+I+KV+   R+ AK  NF IIYGI+ + LA ++ IP  EA + I+ 
Sbjct: 723 HDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIEG 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP +  Y+E  K   R  GY ET+F RR +  +INS  +++R   ER AINAPIQG
Sbjct: 783 YFRTFPKVQAYMEHAKEVARAKGYAETLFHRRRYLADINSRNATVRGFAERNAINAPIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AM+ + +  +   + +KM+LQ+HDEL F V  EE     +I++  M+ A   
Sbjct: 843 TEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEEREQVERIVIEEMQNA--- 899

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL  +     NW E +
Sbjct: 900 -YPLNVPLIADAGWGKNWLEAH 920


>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 922

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/980 (35%), Positives = 532/980 (54%), Gaps = 67/980 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L    +  P  A+ G  NML +L  + +   I ++ A I
Sbjct: 2   PTLLLVDGSSYLYRAFHAMPDLRTTKN-EPTGALHGVLNMLRRLESDYQAAGI-TYKACI 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ YP+YKANRP +P+ ++ Q+  +  A  A G P + I G EADD+I T 
Sbjct: 60  FDAKGKTFRDDWYPEYKANRPPMPDDMVRQIEPLNAAIAALGWPLLSIDGVEADDVIGTL 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V + + DKDL QLV P   L +T+  E +D   V  K+G+PPE++V   A
Sbjct: 120 ATQAAAAGIEVVVSTGDKDLAQLVGPHVTLINTMSNEALDEAGVRAKFGVPPERIVDYLA 179

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+  +G KTA   L +YG+L+  +I A+        +N+    +   L+R
Sbjct: 180 LIGDAVDNVPGVDKVGPKTAVKWLDQYGSLDG-VIAAAAAIGGVVGQNLRRSLDFLPLAR 238

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV +R D+ + + L  L     +  RLI      E    +  V                
Sbjct: 239 RLVSVRCDLELPLALRELAPRPADRERLIELFAHYEMRSWLREV---------------- 282

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                       + E   D   + +  +  S     + +E  P                +
Sbjct: 283 ------------QGEGSADAAAQAAAVAVGSAAAPAVAAEPLP-------------PGAH 317

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  +++    + W+QK+E     +    T ++D   ++ + I+++    +       
Sbjct: 318 RAGYETVLDWPAFENWLQKIENAPLTALDTETTSLDPLAARIVGISLAVAPGE------- 370

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++ L+               E+L+ LK + E+    KIG ++KYD+ VL  +GI++ 
Sbjct: 371 -AAYLPLAHDYP--GVPAQLPCDEVLARLKSWLESPGHAKIGQHLKYDQHVLANHGIALA 427

Query: 485 GF-EDIMLMSYVLDSGR---SSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQ 537
           G   D +L SYVL+SG+     HD+  +A + L       + +     + I  ++++  Q
Sbjct: 428 GVRHDTLLQSYVLESGKDGVRGHDLGQLATRHLGLATIPYEALCGKGANQIGFEQVAIGQ 487

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             E+A E++++  +L  +L P+++ +  L  VY  ++ P+ D++ +ME  G+ ID +LL 
Sbjct: 488 AAEYAAEDADLCQRLHAVLYPQIVADAGLARVYAEIEIPVRDILFRMERQGVLIDGELLT 547

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + S EI K LL LE   +  +G+ FN++SPKQL +ILF KL  P   KT +G   T  + 
Sbjct: 548 RQSHEIGKRLLDLEARAHAAAGQPFNVNSPKQLAEILFDKLGLPVKKKTPSGTPSTDEEV 607

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L ++   D P+ K +LE RQL+K+K TY D LP  +N  T RVHT Y+ A  +TGRLAS 
Sbjct: 608 LSELAL-DYPLPKILLESRQLAKLKGTYTDKLPKMVNAGTGRVHTSYAQAVAVTGRLASS 666

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T  G++IR AFI+PP   L+SADYSQIELRI+AH+++   L + F    D
Sbjct: 667 DPNLQNIPVRTAEGRRIRAAFIAPPGSSLVSADYSQIELRIMAHLSEDARLLEAFAQGED 726

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +HR  AAEIFGV    V P  RR AK INF +IYG+S F LA +L + R  A  YI+RYF
Sbjct: 727 VHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIYGMSAFGLARELDLERGAAQAYIERYF 786

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  Y+  T+   R  GYVET+FGRR+   EI S ++  R   ERAAINAP+QGSA
Sbjct: 787 ARYPGVARYMATTREAARTQGYVETVFGRRLWLPEIRSSQAGRRQGAERAAINAPMQGSA 846

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI+V   L+  +L T++L+Q+HDELV EVP++E+      +   M        
Sbjct: 847 ADLIKSAMIAVQGWLDAERLQTRLLMQVHDELVLEVPDDELARVRGELPRLM----TDFA 902

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
           +LRVPL V++ V  NW E +
Sbjct: 903 SLRVPLVVDVGVGANWDEAH 922


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 919

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/964 (34%), Positives = 519/964 (53%), Gaps = 70/964 (7%)

Query: 38  IAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
           + G  NML  L+         SH AV+FD    TFR+E++  YK++RP +P+ L  Q+  
Sbjct: 1   MYGVLNMLKSLVAQVE----PSHIAVVFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQP 56

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           +    +A GIP I I+G EADD+I T    A   G  V I + DKD+ QLV+    L +T
Sbjct: 57  LHTIIKALGIPLISIEGVEADDVIGTLAVQAANAGKNVLISTGDKDMAQLVNDHIMLINT 116

Query: 158 VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
           +    +D E VI K+GIPPE ++   AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I
Sbjct: 117 MNNTLLDREGVIDKYGIPPELIIDYLALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEI 176

Query: 218 LINASRI------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
             N  ++        K     +    + A LS  L  ++TDV + +  E L+++      
Sbjct: 177 YANLDQVATLSFRGAKTLAPKLEAEKDAAALSYLLATIKTDVELEVTHEQLVVQPQKRDE 236

Query: 272 LISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQF 331
           L+      EF + +N V    +    N E  +                         + +
Sbjct: 237 LVELFGRYEFKRWLNEVMNDANPVTQNSEEKI------------------------PNNY 272

Query: 332 SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391
            + +     + +EQT            ++  IN   Y  +   + +Q W++K+  +   +
Sbjct: 273 QATASVPQAVETEQT-----------FAKVEINRSRYETVTTMEQLQSWIEKINQVKLVA 321

Query: 392 FKIITDTMDAFHSKPIAIAI-------STLDQKDDTSFKVETIFIDLSVHTSQ------- 437
               TD +D+  +  + ++          +         +E    DL    ++       
Sbjct: 322 VDTETDNLDSMSANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSF 381

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVL 496
           +   K       L+ LK   EN    KIG NIKYD  +   +G+ + G   D ML SY L
Sbjct: 382 ELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTL 441

Query: 497 DSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
           +S    H++  +A ++L +     +EI    K+ + +DKI+     ++A E+++V ++L 
Sbjct: 442 NST-GRHNMDELADRYLGHKTIEFEEIAGKGKNQLTLDKIAIDVASQYAAEDADVTMKLH 500

Query: 554 LLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            +L P+L     L+ ++  ++ P+++V+S++E  G+ ID + L   SAEI + L  LE+ 
Sbjct: 501 QVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQL 560

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
           ++  +GE FNL+S KQL +ILFTKL  P   KT  G   T  + L+++    + + K ++
Sbjct: 561 VHSEAGEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLM 620

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
           E R LSK+KSTY D LP  IN++T RVHT Y  A T TGRL+S +PNLQNIPI+ + G++
Sbjct: 621 EHRGLSKLKSTYTDKLPLMINQKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRR 680

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR+AFI+    K+++ADYSQIELRI+AH+A    +   F    DIHR  AAEIFG+ +++
Sbjct: 681 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 740

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           V+ + RR AK INF +IYG+S F L+ QL I R++A  Y++RYF R+P + +++   +  
Sbjct: 741 VTSEQRRSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRES 800

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
             + GYVET+FGRR++  EI S  +  R   ER AINAP+QG+AADI + AMI + K++ 
Sbjct: 801 ASEKGYVETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIR 860

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                 KM++Q+HDELVFEV EE +   SQ+I   MEKA    I L+VPL   + V +NW
Sbjct: 861 GDD-NIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNW 915

Query: 973 QEEN 976
            E +
Sbjct: 916 DEAH 919


>gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
 gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/988 (33%), Positives = 532/988 (53%), Gaps = 47/988 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M     +FLVD  + I+R +YA     R    G   +AI GF N L  +++  R      
Sbjct: 1   MSDNKRVFLVDAYALIFRGYYAFIKNPRINSKGQDTSAIMGFMNSLLDVIKRERPNL--- 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             AV FD    T R E++ +YKANR + PE +   +P +    +A  IP +  +GFEADD
Sbjct: 58  -LAVCFDKGGSTDRVEMFEEYKANRDETPEGIKTAIPYICQILEAMHIPIMVKEGFEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIPP 176
           +I T    AEKEG+   +++ DKD  QLVS    +Y  V     E   I  V KK+ +  
Sbjct: 117 VIGTLAKQAEKEGYQTFMVTPDKDFAQLVSENIFMYRPVFGGGYETWGIPEVQKKFEVTD 176

Query: 177 E-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++    + GD+ DNIPG+PG+G KTA   L  YG++EN+  N   +K  K +E I  
Sbjct: 177 PLQVIDYLGMMGDASDNIPGLPGVGDKTAKKFLAAYGSMENLFANTHELKG-KMKEKIEA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E   LS+KL  +  DVP+    +   L+  +  ++    + LEF +L +    T+  D
Sbjct: 236 NQELGLLSKKLATIMLDVPVEFHAKDFELDAPDIDKVKEIFQELEFRRLTDNFIKTFAED 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           +    P + +  +  ++    +T     +     QF+      ++     +       R 
Sbjct: 296 S----PAIGNSTSNTSEKPTSKTSTAPTSNAGAGQFNLFGGDPNETKDGTSNIDTAFTRR 351

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +        Y  +      + +++ L    S  F   T  ++   ++ + IA S   
Sbjct: 352 TVANTSHF----YQSVAPGMATKLFIKNLMNQTSVCFDTETTGLNPLTAELVGIAFSWET 407

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K          ++       +         + I+  L+ FFE E+  KIG N+KYD  V
Sbjct: 408 GKG--------FYLPFPEDKQE--------AQAIIEALRCFFEAENIQKIGQNLKYDIKV 451

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPI 530
           L +Y + ++G   D ML  Y+++     H++  +A+ +L+Y      + I K  K+ + +
Sbjct: 452 LAKYNVEVKGPLFDTMLAHYLINPDM-RHNMDVLAETYLNYTPVSITELIGKKGKNQLSM 510

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +   +  E+A+E++++ LQL      +L       +++ ++ P++ V++ ME+ GI +
Sbjct: 511 RDVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFDDIEVPLLRVLAAMELEGINL 570

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D+D L+ +S ++++++ +L   IYD++GE+FN++SPKQLG ILF KLK      KTKTGQ
Sbjct: 571 DKDFLQSLSNDLNRDIEALVTKIYDVAGEEFNIASPKQLGIILFEKLKLVDKPKKTKTGQ 630

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +K T +D+  +   D+ II+NILE+R L+K+KSTY D+LP  + + T RVHT Y      
Sbjct: 631 YK-TGEDILSVLAKDHEIIRNILEYRGLAKLKSTYVDALPLQVEESTGRVHTDYMQTVAA 689

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+++R+AFI       L++ADYSQIELRI+A ++K   + 
Sbjct: 690 TGRLSSNNPNLQNIPIRTERGRQVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMI 749

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+N  DIH   A+++FGV IE+V+   R +AKT+NF IIYG+S F L+ Q  + R EA
Sbjct: 750 EAFKNGEDIHASTASKVFGVPIEEVTRAQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEA 809

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  Y+  +P + +Y+ +  +F R NGYV+TI  RR +  +INS  + +R   ER A+
Sbjct: 810 KELIDTYYETYPKLKKYMSEQVHFARDNGYVKTILDRRRYLKDINSRNAVVRGAAERNAV 869

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI+++  LE     TKMLLQ+HDELVF+V + E+   + +I   M
Sbjct: 870 NAPIQGSAADIIKIAMINIYNKLEAGNYKTKMLLQVHDELVFDVYKPELEKMTTLIKTEM 929

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A      + VPL V +    NW E +
Sbjct: 930 ENA----FKMEVPLDVEVDTGLNWLEAH 953


>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
          Length = 949

 Score =  905 bits (2340), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/987 (33%), Positives = 528/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MDSSNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRVLKKEVSG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     + T ++    +    +    I+   F++ +      N     +K  LE L
Sbjct: 296 NGITSTPKSKVATGKSAPSPLPLFPEEGGGIQGDLFANFTP-----NEPNEAKKSNLETL 350

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +  S       +Y  I   K  ++ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 351 ESQS------RNYQLIDTEKKRREIIQKLLTSKILSLDTETTETEPMDAELVGMSFSIAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +     +          +I+   +  FENE+ LK+G NIKYD +V
Sbjct: 405 NE--------AFYVPVPSDRDE--------ALKIVKEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG  ++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V  +A E++++ L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + L+Q SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK      KTKTGQ
Sbjct: 568 DTEALQQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFNQTVTA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           KA      + VPLK +     NW E +
Sbjct: 927 KA----YRMHVPLKADCGWGKNWLEAH 949


>gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 924

 Score =  905 bits (2340), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/980 (40%), Positives = 596/980 (60%), Gaps = 71/980 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI---A 58
           QK +H +L+DGS +I+RA+YA P L+RK DGLP  A++GFC+ML+KLL++S+ +      
Sbjct: 5   QKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPTGAVSGFCSMLFKLLEDSKSDQNLQKP 64

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +HFAVIFD    TFRNEIY DYKANR + P+ L PQ   +R +  AF +P++++  +EAD
Sbjct: 65  THFAVIFDSARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVLAFNLPSVDLPNYEAD 124

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IATY     K+G  VTI+S+DKDLMQL      ++D +K + I  E +I K+G+   K
Sbjct: 125 DLIATYAEKILKKGAKVTIVSSDKDLMQLYKKDVRIFDPMKNKFISEEDIINKFGVDASK 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +Q+L GDS DN+PG+PGIG KTAA L+ +YG LE +L +A+ IKQ KRRE ++E  +
Sbjct: 185 VIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLKSANEIKQNKRRETLIENKD 244

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +S++LV L+ D P+   L    L+  +  +L  FL+ +EF +L++            
Sbjct: 245 KAIISKQLVTLKQDSPVNRDLSEFKLKKIDKDKLYKFLREMEFNRLLS------------ 292

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                            S++S       S +T +   +E+    
Sbjct: 293 ---------------------------------SAISAYGEPKLSSETVEDKLIEK---- 315

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            Q PI+N +Y  I + K I +W+++ E  G  +    T+++D   +  + I++S+   K 
Sbjct: 316 -QKPISNKNYFLITDIKQIDEWIKEAEETGELAVDTETNSLDPHQADLVGISLSSKVGK- 373

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I +   +S     K     +++  LK   E+    KIG NIK+D +VL +
Sbjct: 374 -------ACYIPIGHKSS-----KCINKNDVIKKLKPLLEDPSVKKIGQNIKFDFIVLFK 421

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
            GI M   ED MLMSYVLD+G++ H++ ++++  L +     KEI+ + K  I    +  
Sbjct: 422 QGIEMTSMEDTMLMSYVLDAGKNRHNMDTLSEIHLGHKTISFKEIVGTGKKEINFSDVEI 481

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            + +++A E++++  +L+      L +EK++++YE  +KP+I +++ ME+ G+++D   L
Sbjct: 482 ERAKDYAAEDADITFRLYKKFSKNLKLEKMINIYEIFEKPLIKILAFMEMEGVEVDNKFL 541

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K +S++  K + +LE+ I+ +S + FN++SPKQLG+I++  LK     KTK G + T+A 
Sbjct: 542 KTLSSKFEKKIKNLEKEIFKISKKDFNIASPKQLGEIIYNDLKIAELKKTKKGSFATSAS 601

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE +    +   K +L+WRQ+SK+K+TY+DSLP HIN  T+RVHT + LA+T TGRLAS
Sbjct: 602 VLEDLAFKGHKFPKLVLDWRQVSKLKNTYSDSLPEHINPNTKRVHTSFLLAATTTGRLAS 661

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPIK++ G+ IR+AF S     LISADY+QIE+RILA +A +  L + F+N  
Sbjct: 662 SDPNLQNIPIKSEDGRDIRKAFTSRKNHLLISADYNQIEMRILADLADVKELKKAFKNDE 721

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + A++IF V+I+KV    RR AK INF IIYGIS + LA Q+ +   EA +++  Y
Sbjct: 722 DIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYGISQYGLAKQINVSNYEAEEFLDAY 781

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F +FP I  Y+  T  F R++GYV  IFGRR H++ IN    ++RN  ERAAINAPIQGS
Sbjct: 782 FAKFPEIKIYMNDTIKFCRKSGYVNNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQGS 841

Query: 896 AADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC-L 953
           A++I R AMI ++K L D K + +KMLLQIHDEL+FEVP+    T  ++I   M      
Sbjct: 842 ASEIMRLAMIRLNKKLSDKKNIQSKMLLQIHDELIFEVPKNNEKTMIKLIKDEMASVVKS 901

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
              +  +PL V+I V +NW 
Sbjct: 902 DHHSFSIPLTVDINVGDNWG 921


>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
 gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
          Length = 949

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/987 (33%), Positives = 525/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MDSGNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PVQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDISG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     + T ++    +    +    ++   F++            TP +    + 
Sbjct: 296 NGITSATGSKVATGKSAPSPLPLFPEEGGGMQGDLFANF-----------TPDEPGEAKK 344

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L        SY  I   +  Q+ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 345 SNLETLESLTYSYQLIDTEEKRQEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSIAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +                +I++  +  FENE+ LK+G NIKYD +V
Sbjct: 405 NE--------AFYVPVPS--------DQDEALKIVNEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG +++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK      KTKTGQ
Sbjct: 568 DTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+++ ++++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPGVKVYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           KA      + VPLK +     NW E +
Sbjct: 927 KA----YRMHVPLKADCGWGKNWLEAH 949


>gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114]
 gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114]
          Length = 925

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/983 (40%), Positives = 603/983 (61%), Gaps = 65/983 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M KE HLFL+DGS +I+RA+YA P L+RK DGLPV A++GFCNML+  L+ ++  +    
Sbjct: 1   MSKEKHLFLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCNMLYSFLEKAKAGNTMDT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFD     FRN+IY DYK NR   PE L+PQ   +R A +AF +P+IE+  +EA
Sbjct: 61  PTHLAVIFDSARKNFRNDIYKDYKGNRSDAPEDLIPQFDYIRKAVKAFNLPSIEMLNYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY   A+K+   +TI+S+DKDLMQLV   T + DT+K+  I IE V +K+G+PPE
Sbjct: 121 DDLIATYKEKAKKKKIKITIVSSDKDLMQLVDKETFMLDTMKDRHIGIEEVKEKFGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ +Q+L GDS+DNIPG+PGIG KTAA L+ ++G+L+ +L  A  IKQ KRR+ +L+  
Sbjct: 181 KVIDVQSLAGDSVDNIPGVPGIGVKTAAELINQFGSLDELLKKADTIKQPKRRQTLLDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A +SR+LV L+ DVPI   +E  IL+  +  ++ +FL  +EF+K+   +  TY     
Sbjct: 241 KNALISRELVTLKCDVPIKEEIEDFILKPLDKEKIFNFLDEMEFSKIKKSIEQTYGK--- 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                S  T       TPQK   ++   
Sbjct: 298 -------------------------------------SSDTLTKKETATPQKTNNKK--- 317

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     +  I   ++++  +++ +  G  +    T+++++  +  + I+++  + +
Sbjct: 318 -------ESGFHIIYEAQELEDLLKQADNQGYFAIDTETNSLNSQKADLVGISLAINENE 370

Query: 418 DDTSFKVETIFIDLSVHTSQDS-TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     ++ +     QD    K    KE++  LK + E+E   K+G NIKYD  + 
Sbjct: 371 --------AYYVPVGHKNKQDPNLKKQIKIKELVKVLKPYLEDETVKKVGQNIKYDLKIF 422

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            +YGI ++ FED ML+SY LD+G + H++  +A+  L +     K+++ + KS +  D++
Sbjct: 423 LKYGIELKSFEDTMLLSYSLDAGVNRHNLDLLAKTHLDHDNIKFKDVVGTGKSEVTFDEV 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                  +A E+++V L+L+ L + +++ EK   +YE L+ P++DV+++ME  GI+IDQ 
Sbjct: 483 LIDNAYRYACEDADVTLKLYNLFKDRIVKEKCFQIYETLEIPLVDVLARMENNGIKIDQV 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +LK++S   S +L +LE+ IY LSGE+FN++S KQLGDIL+ KLK     KTK G + T 
Sbjct: 543 ILKKLSNSFSADLKTLEKKIYKLSGEEFNIASTKQLGDILYEKLKISGTKKTKKGNFATN 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              LE +    N   K +LEWRQ SK+K+TY DSLP +I+K T+R+HT + LA+T TGRL
Sbjct: 603 VNVLEDLASKGNEFPKLVLEWRQKSKLKNTYTDSLPEYIDKNTKRIHTSFLLAATSTGRL 662

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           AS +PNLQNIPIK+  G+ IR AF+S     +ISADYSQIE+R+LAH+A +  L + F+N
Sbjct: 663 ASADPNLQNIPIKSKEGKLIRSAFVSEKGSSIISADYSQIEMRVLAHVADVKELKKAFKN 722

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIH + A++IF  +I+K++  MRR AK INF IIYGIS + LA Q+ +   EA  ++ 
Sbjct: 723 NEDIHNITASQIFECDIKKINEDMRRKAKAINFGIIYGISSYGLAKQISVSNPEAEQFLF 782

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF +FP I +Y+++T  F R+NG+V+T+F R+ H+  IN    ++++  ERAAINAPIQ
Sbjct: 783 SYFKKFPEIRDYMQETLEFCRKNGFVQTMFNRKCHFPNINDKNHTLKSFQERAAINAPIQ 842

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI R AMI++ K +   K+ +++L+QIHDEL+ E  + ++    Q I + ME A  
Sbjct: 843 GAAADIIRFAMINIDKKILSKKIKSRLLVQIHDELLLETKDMDLKKEIQKIKNEMENAID 902

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
              N  VPL V+   + NW + +
Sbjct: 903 GDYNFSVPLIVDANSAKNWNDAH 925


>gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2]
 gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2]
 gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
          Length = 949

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/987 (33%), Positives = 525/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MDSGNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PTQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVSEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDISG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     + T ++    +    +    ++   F++            TP +    + 
Sbjct: 296 NGITSATGSKVATGKSAPSPLPLFPEEGGGMQGDLFANF-----------TPDEPGEAKK 344

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L        SY  I   +  ++ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 345 SNLETLESLTYSYQLIDTEEKRREIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSIAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +                +I++  +  FENE+ LK+G NIKYD +V
Sbjct: 405 NE--------AFYVPVPS--------DQDEALKIVNEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG +++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK      KTKTGQ
Sbjct: 568 DTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+++ ++++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           KA      + VPLK +     NW E +
Sbjct: 927 KA----YRMHVPLKADCGWGKNWLEAH 949


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/983 (33%), Positives = 528/983 (53%), Gaps = 75/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYR++YA     R    GL  +AI GFCN L ++L         ++  V
Sbjct: 2   DKLFLLDAYALIYRSYYAFINNPRINSKGLNTSAIMGFCNTLNEVLTKEN----PTYIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+  +TFRN+ +P YKA R   PE +   +P+++   +A+ IP++++ GFEADD+I T
Sbjct: 58  AFDH-GLTFRNDAFPAYKAQREATPEDIKKAVPIIKQILEAYHIPSLQVDGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPE-KM 179
               + K+G    +++ DKD  QLV     +Y        E +  + +  K+ I    ++
Sbjct: 117 LAMKSGKKGIDTYMLTPDKDYGQLVRENVFMYRPRHGGGYETLGEKEICDKYNITTPLQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTA+ L+ ++G++E +L   S IK  K RE +    + 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTASKLINQFGSIEELLKRTSEIKG-KLREKVENATDD 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVPI + LE L L+  +  +L      LEF    NR+           
Sbjct: 236 IKMSQFLATIRTDVPIELNLEDLKLKQPDENKLAEIFTELEFKTFANRILNK-------- 287

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                     I   Q +  ++ ++   +E  P+    E L+   
Sbjct: 288 --------------------SQNSPKITNKQLNLFAESSAIGQAE--PKNASFESLK--- 322

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                +  Y  I + ++  +      T    S    T + +   ++ + ++ +   +K  
Sbjct: 323 ---TGHYEYKLIDSQEEAHRICDFFLTNKILSLDTETTSTNPMEAELVGLSFAVEPKK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +          K+     ++   K  +ENE  +K+G NIKYD  VL  Y
Sbjct: 378 ------AFYVPVP--------AKHEDAVNLVKIFKPLYENEEIVKVGQNIKYDMEVLRNY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPIDKIS 534
           GI ++G   D M+  YVL      H++  +A+ +L+Y      K I +  K+   +  +S
Sbjct: 424 GIELKGPMFDTMIAHYVLQP-ELRHNMDYMAEVYLNYQTIHIEKLIGERGKNQKNMRDLS 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + V  +A E++++ LQL   L PKL    +  ++ +++ P+++V+++ME+ G++ID + 
Sbjct: 483 PTDVYLYACEDADITLQLKNALEPKLKEAGVADLFYQMEMPLVNVLAEMEMNGVRIDTEA 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           LK+ S   +K +L LE  I++L+GE FN+SSPKQ+GDILF KL+      KTKTGQ+  T
Sbjct: 543 LKETSENFTKRMLDLEHQIHELAGESFNVSSPKQVGDILFGKLQIAEKPKKTKTGQF-VT 601

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +++  Q     N I+  IL++R L K+  TY D+LP  IN RT  +HT ++   T TGRL
Sbjct: 602 SEEELQKYAAGNEIVTLILDYRGLKKLLGTYVDALPKLINPRTGHIHTSFNQTVTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++ + G++IR+ FI        SADYSQIELR++AH++    + + F++
Sbjct: 662 SSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIEAFQH 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+G +++ V+   R  AK  NF IIYGI+ F LA +L I R+EA   I 
Sbjct: 722 GYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRNEAKQLID 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +++Y+E+ K   R+ GYVET F RR +  +INS  +++R   ER AINAPIQ
Sbjct: 782 GYFTTFPQVYDYMEQAKATAREQGYVETFFHRRRYLPDINSRNATVRGFAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AMI ++K  +   + +KM+LQ+HDEL F V  EE     +I++  M+ A  
Sbjct: 842 GSAADIIKVAMIRIYKRFKRENIQSKMILQVHDELNFSVLPEEKEQVERIVMEEMQNA-- 899

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL  +     NW E +
Sbjct: 900 --YPLRVPLIADGGWGKNWLEAH 920


>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
 gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
          Length = 949

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/987 (33%), Positives = 525/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MDSGNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PTQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVSEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDISG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     + T ++    +    +    ++   F++            TP +    + 
Sbjct: 296 NGITSATGSKVATGKSAPSPLPLFPEEGGGMQGDLFANF-----------TPDEPGEAKK 344

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L        +Y  I   +  ++ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 345 SNLETLESLTYNYQLIDTEEKRRKIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSIAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +                +I++  +  FENE+ LK+G NIKYD +V
Sbjct: 405 NE--------AFYVPVPS--------DQDKALKIVNEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG +++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK      KTKTGQ
Sbjct: 568 DTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+++ ++++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           KA      + VPLK +     NW E +
Sbjct: 927 KA----YRMHVPLKADCGWGKNWLEAH 949


>gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
 gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
          Length = 949

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/987 (33%), Positives = 524/987 (53%), Gaps = 49/987 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MDSGNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVSEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDISG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     + T ++    +    +    ++   F++            TP +    + 
Sbjct: 296 NGITSATGSKVATGKSAPSPLPLFPEEGGGMQGDLFANF-----------TPDEPGEAKK 344

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L        SY  I   +  Q+ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 345 SNLETLESLTYSYQLIDTEEKRQEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSIAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +                +I++  +  FENE+ LK+G NIKYD +V
Sbjct: 405 NE--------AFYVPVPS--------DQDEALKIVNEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG +++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V  +A E+++V L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + LKQ SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK      KTKTGQ
Sbjct: 568 DTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++   T 
Sbjct: 628 YVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   +  
Sbjct: 687 TGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMID 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++ DIH   AA+I+  +++ V   MRR AKT NF IIYGIS F LA ++ + R EA 
Sbjct: 747 AFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER AIN
Sbjct: 807 ELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++  ME
Sbjct: 867 APIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           KA      + VPLK +     NW E +
Sbjct: 927 KA----YRMHVPLKADCGWGRNWLEAH 949


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/989 (33%), Positives = 540/989 (54%), Gaps = 61/989 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  LFLVD  + I+R +YA     R    G   +AI GF N L+ +++  + +    
Sbjct: 1   MAAQKRLFLVDAYALIFRGYYAFIKNPRINSKGFDTSAIMGFMNSLFDVIRREKPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R E++ DYKANR   PE ++  +P ++   +A  IP +E+ G EADD
Sbjct: 57  HLAVCFDKEGSEVRTELFSDYKANRDATPEPIMQGIPYIQSILKAMHIPVVELPGCEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T    AEKE + V +++ DKD  QLVS    +Y   +     E   I  V KK+ + 
Sbjct: 117 IIGTLAKQAEKENYQVYMVTPDKDFAQLVSENIFMYRPARMGNGIEIWGIPEVQKKFEVE 176

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++    + GD++DNIPG+PG+G KTA   L+++G++E +L N  ++K  K RE + 
Sbjct: 177 RPEQVIDFLGMMGDAVDNIPGLPGVGEKTAKKFLKQFGSMEELLANTDQLKG-KMREKVE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
             AE   LS+KL  +  D  +    E   L   +  ++      LEF +L ++    ++ 
Sbjct: 236 TNAEQGILSKKLARIIIDCDVKFHAEDYELSMPDSEKVQELFDELEFRRLKDQFIKLFNG 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +  N   V    +  +N+  A              QFS     +S+           +E 
Sbjct: 296 EEDNQTQVSNSPSAKKNEQTA-----------GAGQFSLFGGDSSE----------KIES 334

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y K+     ++ ++QKL    S  F   T +++   ++ + IA S  
Sbjct: 335 TNSRKTLKDTPHVYQKVDTGLGLRLFIQKLMKQKSVCFDTETTSLNPLEAQLVGIAFSWE 394

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K          ++    +  +        T++++  L+ FFE+    KIG N+KYD  
Sbjct: 395 GGKG--------YYLPFEDNIEK--------TQQLIELLRPFFESPEIEKIGQNLKYDIK 438

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIP 529
           VL +YGI + G   D M+  Y+++     H++  +A+ +L+YT + I     K  K+   
Sbjct: 439 VLDKYGIKVEGPTFDTMIAHYLINPDM-RHNMDILAETYLNYTPQPISELIGKKGKNQKS 497

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +  ++  E+A E++++  QL      +L   K   ++  ++ P+++V++ MEI GI 
Sbjct: 498 MRDVPLAEQTEYAAEDADITFQLKEFFEKELDEAKTRKLFNEIEMPLVEVLADMEIEGIN 557

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D D LK++S  + +++  LE  IY+ +GE+F +SSPKQLG ILF KL       KTKTG
Sbjct: 558 LDLDFLKKLSEALDRDIKELEAKIYEAAGEEFKISSPKQLGIILFEKLALVKKPKKTKTG 617

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+  T++D+      ++ I++++L++R L K+++TY D+LP  + K + RVHT Y     
Sbjct: 618 QYS-TSEDVLSYLAPEHEIVQHVLDYRGLVKLQNTYVDALPGQVEKSSGRVHTDYVQTIA 676

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ G+++R+AFI       L++ADYSQIELRI+A +++   +
Sbjct: 677 ATGRLSSNNPNLQNIPIRTERGRQVRKAFIPRSDDYVLLAADYSQIELRIIAALSEEETM 736

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F++  DIH   A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  + RSE
Sbjct: 737 IKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTSLSRSE 796

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + + I  Y+  +P +  YI     + R++GYV TI GRR +  +INS  + +R   ER A
Sbjct: 797 SKELIDTYYKTYPKLSNYIADQVAYAREHGYVSTILGRRRYLKDINSQNAVVRGAAERNA 856

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI++HK L + KL TKMLLQ+HDELVF+V + E+    ++I   
Sbjct: 857 VNAPIQGSAADIIKIAMINIHKKLGEEKLQTKMLLQVHDELVFDVYKPELDQVKKLIKSE 916

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A      L VPL V++ V  +W E +
Sbjct: 917 MENA----YQLNVPLDVDLGVGQDWLEAH 941


>gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 921

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 528/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +  N  ++        K     + E+ E
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEKVATLPIRGAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +   L+                         
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDTLMELY---------------------- 277

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E++  + I+  Q  ++      +  E T            
Sbjct: 278 -------------------AELEFKSWIEDLQRDAMRAGQELVVEEPTVAA--------- 309

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 310 -----KEAAYEVILEQDRFDAWLKKLQAAPLFAFVTQSNGNDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                   +GI ++G   D +L SYVLDS  + HD  S+  K+L++     ++I      
Sbjct: 415 CAIGGDQAHGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPVNFQDIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFETRLAAIPTLQPVLSDIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALECEAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT RVHT Y  
Sbjct: 595 ATGQPSTAEAVLSELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRVHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLARDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELEGVTNDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVEQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
 gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
          Length = 905

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/977 (34%), Positives = 527/977 (53%), Gaps = 77/977 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+ + + E    + A 
Sbjct: 2   KKTLLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDHKAE----YAAC 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YK++RP +PE L  Q+  +  A +A G P + I+G EADD+I T
Sbjct: 57  IFDARGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHSAVRALGWPVLAIEGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +      + + DKDL QLV+    L +T+  E +D   V+ K+G+PP+++V   
Sbjct: 117 LAKRAAEHDVYTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEAGVVNKFGVPPDRIVDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTA   L E+G+++ ++  A  IK      N+ E      L+
Sbjct: 177 MLVGDAVDNVPGVTKVGPKTAVKWLTEFGSIDKLVEGAEDIKG-VAGSNLREAIPNFPLT 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+L+ ++ D  +   ++                                           
Sbjct: 236 RQLLTVKYDCDLAGHVD------------------------------------------A 253

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           +D  T   +  A  TE+      +T       D      +E+ P      R+   +    
Sbjct: 254 VDDLTPRPRDEATLTELYERYGFRTWLRDLTGD------AERVPA--GDARVAHEAPAAP 305

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  + +      W++KL+     +    T ++D   ++ + ++++           
Sbjct: 306 VELDYQILSDWAAFDAWMEKLKDAPLVAVDTETTSLDEMQARMVGMSLAVSPGV------ 359

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I ++     ++        E+L+ LK + E+    K+ H+ KYD  V    GI +
Sbjct: 360 --ACYIPVAHRGPDNAP--QLPKAEVLARLKPWLEDATRAKLLHHAKYDAHVFANEGIKL 415

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQ 539
            G  ED ML +YVL+S R    +  +AQ++L     + +++       I  D+++  +  
Sbjct: 416 AGITEDTMLQAYVLESHRGV-GLNDLAQRYLGRSGVSYEDLCGKGAKQIGFDEVAVDKAG 474

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+S+  LQL  +LRP +  ++ L+    L+  + +V++ +E  G+++D   L + S
Sbjct: 475 HYAAEDSDFTLQLHQVLRPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQS 534

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            ++ + +L LE+  Y+L+G+ FNL+SPKQLG+ILF +++ P   KT +G   T  + L +
Sbjct: 535 HKLGQEMLQLEQKAYELAGQPFNLNSPKQLGEILFGRMQLPVVRKTASGAPSTDEEVLSK 594

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D P+ + +LE+R LSK+KSTY D LP  IN  T RVHT YS A+ +TGRLAS +PN
Sbjct: 595 L-AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPNTGRVHTHYSQAAVITGRLASSDPN 653

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T+ G+++R AFI+     L+SADYSQIELRI+AH++    L + FE   DIHR
Sbjct: 654 LQNIPVRTEAGRRVREAFIAEQG-MLLSADYSQIELRIMAHVSDDANLQRAFEAGEDIHR 712

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+FGV++E VS + RR AK INF +IYG+  F LA+ L I R  A  YI RYF R+
Sbjct: 713 ATASEVFGVSLEDVSTEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARY 772

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+  Y++ T+   R+ GYVET+FGRR+   EI       R   ERAAINAP+QG+AAD+
Sbjct: 773 PGVAMYMDDTRRRAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQGTAADL 832

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V   LE  KL T+M++Q+HDELV E P+ E+    + +   M         LR
Sbjct: 833 IKMAMIAVQDWLEAEKLQTRMIMQVHDELVLEAPDAELELVKEALPRLMCNVA----TLR 888

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL   + +  NW++ +
Sbjct: 889 VPLVAEVGMGKNWEQAH 905


>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
 gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
          Length = 905

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/977 (33%), Positives = 517/977 (52%), Gaps = 77/977 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRAF+A P L R   G P  A+ G  NML KL+ + + E    + A 
Sbjct: 2   KKTLLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDHKAE----YAAC 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+++YP+YK++RP +PE L  Q+  +  A +A G P + I+G EADD+I T
Sbjct: 57  IFDARGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A +      + + DKDL QLV+    L +T+  E +D   V+ K+G+PP+++V   
Sbjct: 117 LAKRAAEHDVHTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEPGVVNKFGVPPDRIVDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD++DN+PG+  +G KTA   L E+G+++ ++  A  IK      N+ E      L+
Sbjct: 177 MLVGDTVDNVPGVTKVGPKTAVKWLTEFGSIDKLIEGAETIKG-VAGNNLREAIPNFPLT 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+L+ ++ D  +T  +E                                           
Sbjct: 236 RQLLTVKYDCDLTGHVES------------------------------------------ 253

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           +D      +  A  TE+      +T       D       +         R+        
Sbjct: 254 VDDLIPRERDTATLTELYERYGFRTWLRDLTGDAERVPTGDA--------RIAVDVPQAP 305

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I +  +   W ++L+     +    T ++D   ++ + ++++           
Sbjct: 306 TELDYRIISDWAEFDAWFERLQNASLVALDTETTSLDQMQARLVGLSLAVEPGV------ 359

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I ++      +T       E+L+ LK + E+    K+ H+ KYD  V    GI++
Sbjct: 360 --ACYIPVAHRGPDGAT--QLPKAEVLARLKPWLEDASRAKLLHHAKYDAHVFANEGIAL 415

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQ 539
            G  +D ML +YVL+S R    +  +AQ++L     + +++       I  D+++  +  
Sbjct: 416 AGITDDTMLQAYVLESHRGV-GLNDLAQRYLGRSGISYEDLCGKGAKQIGFDEVAVDKAG 474

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++  LQL  +LRP +   + L    +L+  +  V++ +E  G+++D + L + S
Sbjct: 475 HYAAEDADFTLQLHHVLRPMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEELGRQS 534

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            ++ + +L LE+  Y+L+G+ FNL+SPKQLG+ILF +++ P   KT +G    T +D+  
Sbjct: 535 HKLGQEMLRLEQKAYELAGQPFNLNSPKQLGEILFDRMQLPVVRKTASGAPS-TDEDVLT 593

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D P+ + +LE+R LSK+KSTY D LP  IN  T RVHT YS A+ +TGRLAS +PN
Sbjct: 594 KLALDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTRYSQAAVITGRLASSDPN 653

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T+ G+++R AFI+     L+SADYSQIELRI+AH++    L   F    DIHR
Sbjct: 654 LQNIPVRTEAGRRVREAFIAEQG-MLLSADYSQIELRIMAHVSDDANLQSAFAAGEDIHR 712

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FGV +  VS   RR AK INF +IYG+  F LA+ L I R  A  YI RYF R+
Sbjct: 713 ATAAEVFGVALADVSTDQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARY 772

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+  Y+E T+   R+ GYVET+FGRR+   EI       R   ERAAINAP+QG+AAD+
Sbjct: 773 PGVAMYMENTRRLAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQGTAADL 832

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++V   LE  KL T+M++Q+HDELV E P+ EI    + +   M         LR
Sbjct: 833 IKLAMVAVQDWLEAEKLQTRMIMQVHDELVLEAPDNEIEVVKEALPRLMCSVA----ELR 888

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL   + +  NW++ +
Sbjct: 889 VPLVAEVGMGKNWEQAH 905


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/990 (34%), Positives = 527/990 (53%), Gaps = 87/990 (8%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  EN L LVDGSS++YRA+Y+ P L+    G    A+ G  NML  LL+  +     
Sbjct: 1   MPKIAENPLVLVDGSSYLYRAYYSPPHLTNSK-GEATGAVYGVINMLRSLLKQYK----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +  AVIFD    TFRN++Y DYKA RP +P+ L  Q+  +    +A G+P + I G EAD
Sbjct: 56  TQMAVIFDAKGKTFRNDMYADYKAQRPPMPDDLRTQIEPLHRIIRAMGLPLVCISGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T +  A KEG +V I + DKD+ QLV     L +T+    +  + V +K+G+ PE 
Sbjct: 116 DVIGTISTQASKEGRSVLISTGDKDMAQLVDDNVTLINTMTNTIMGPDEVTEKFGVGPEL 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
           ++ L AL GD  DNIPG+PG+G KTA  +L   G ++ IL    ++ +      K     
Sbjct: 176 IIDLLALQGDKADNIPGLPGVGEKTAVAMLTGAGGIDKILAAPEKMPELGFRGSKTMPAK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + E+ +   LS  L  ++ DV +    + L +E                           
Sbjct: 236 LAEHRDILELSYALATIKLDVELEQDWQDLTIEP-------------------------- 269

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
               AN + ++      E K    E                L ++T     E+T  +  +
Sbjct: 270 ----ANRDELIKCFAEMEFKRWLAEV---------------LDNKTGSGKDEKTTDEEVI 310

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           ++             YT I   +++  W+ KL      +    T +++   +K + I+ +
Sbjct: 311 KQD--------IKTEYTTIYTHEELDLWIDKLTNADLIAIDTETTSLNYMEAKLVGISFA 362

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               K          ++ L  H   D+  K     E L+ LK   EN    K+G N+KYD
Sbjct: 363 IEAGK--------AAYLPLG-HDYLDAP-KQLDQAEALAKLKPLLENPELKKVGQNLKYD 412

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
             +    GI ++G   D ML SYV +S  + H++  +A K+L +     +EI       +
Sbjct: 413 ISIFANVGIKLQGIAFDTMLESYVFNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQL 472

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++I       +A E++++ L+L   L P+L  E +L  V+  ++ P+I ++S +E  G
Sbjct: 473 TFNQIDLEIAAPYAAEDADITLRLHQHLWPRLEKEPQLAAVFTDIELPLIQILSDIERGG 532

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  +L Q S E+++ +  LE+  ++++GEKFNLSSPKQL  + F KL +P   KT  
Sbjct: 533 VLIDGMMLGQQSEELARTIDELEQKAFEIAGEKFNLSSPKQLQALFFEKLGYPIIKKTPK 592

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G    TA+D+      D P+ K IL+ R L+K+KSTY D LP  +N ++ R+HT Y  A+
Sbjct: 593 GAPS-TAEDVLVELALDYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQSGRIHTSYHQAN 651

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S EPNLQNIPI+T+ G++IR+AFI+   KK+++ADYSQIELRI+AH+++   L
Sbjct: 652 AATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAREGKKVLAADYSQIELRIMAHLSQDKGL 711

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAE+F V+ ++V+ + RR AK +NF +IYG+S F LA QL I R E
Sbjct: 712 LTAFAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDISRPE 771

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+ +Y+E+T+      GYV T++GRR++   I    +  R   ERAA
Sbjct: 772 AQKYIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAA 831

Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMI++   +  + +   +M++Q+HDELVFEV  ++     + +  
Sbjct: 832 INAPMQGTAADIIKKAMINIAHWIATETRGEIEMIMQVHDELVFEVDSDKAEEMREKVCQ 891

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M  A    ++L V L     + +NW++ +
Sbjct: 892 LMADA----VSLDVELLAEAGIGDNWEQAH 917


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/988 (34%), Positives = 542/988 (54%), Gaps = 60/988 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  LFL+D  + I+R +YA     R    G+  +AI GF N L+ +++  + E    +
Sbjct: 6   SNDKRLFLLDAYALIFRGYYALIKNPRINSAGMDTSAIMGFTNSLFDVIRREKPE----Y 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD      R E+Y DYKANR + PE +   +P ++   +A  IP +E  G EADD+
Sbjct: 62  LAVAFDKEGSKERVELYADYKANRDETPEAIKIAVPYIQQILKAMHIPIVEEAGIEADDL 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP- 175
           I T    AEKEGF   +++ DKD  QLVS    +Y   +     E   I  V KK+ +  
Sbjct: 122 IGTLAKQAEKEGFTTYMVTPDKDYAQLVSDNIFMYKPARMGNGIEIWGIPEVQKKFEVER 181

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE+++    + GD+ DNIPG+PG+G KTA   +  YG++E +L N  ++K  K +E ++ 
Sbjct: 182 PEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIAAYGSMEGLLDNTDQLKG-KMKEKVIA 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            AE   LS+KL  +R D P++    +  L+D +   +      LEF +    +A  +  +
Sbjct: 241 NAELGLLSKKLATIRLDCPVSFNASNYTLDDPDVEAVHEIFDELEFRRAKETLAKIFSKE 300

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            A       + NT              +++    QFS      S   +E           
Sbjct: 301 VAPTSSSSSNSNT------------SSNSSAGAGQFSLFDTPGSGTAAESE--------S 340

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                   ++  Y  +      + ++Q L    S  F   T  +D   ++ + IA S   
Sbjct: 341 TGRKTLATSDHLYQLVQEGMGTKLFLQSLMQQSSVCFDTETTGLDPLTAELVGIAFSWEK 400

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K          ++ +               + I+  LK FFE+    K+G N+KYD  V
Sbjct: 401 GKG--------FYLPIPEDRE--------AAQVIVDQLKPFFESASIEKVGQNLKYDIKV 444

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSSIPI 530
           L +YG+ ++G   D ML  Y+++     H++  +A+ +L+YT + I+    K  K+ + +
Sbjct: 445 LDKYGVDVKGPMFDTMLAHYLINPDM-RHNMDVLAETYLNYTPQSIVELIGKKGKNQLSM 503

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +   + +E+A+E++++ LQL     P+L       +++ ++ P++DV++ MEI GI +
Sbjct: 504 RDVDLEKQKEYAVEDADITLQLKEHFTPELASAGTDKLFKDIEMPLLDVLAAMEIEGINL 563

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D+D L  +S ++  ++  LE++IY+++GE+FN+ SPKQLG ILF KLK      KTKTGQ
Sbjct: 564 DEDFLSSLSGDLETDITQLEKDIYEVAGEEFNIGSPKQLGVILFEKLKLVDKPKKTKTGQ 623

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  TA+D+      D+ II+N+L++R LSK+KSTY D+LPN ++ +TQR+HT Y      
Sbjct: 624 YS-TAEDVLSYLAKDHAIIQNVLDYRGLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVAA 682

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S +PNLQNIPI+T+ G+++R+AFI       LI+ADYSQIELRI+A +++   + 
Sbjct: 683 TGRLSSTDPNLQNIPIRTERGRQVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMI 742

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F++  DIH   AA++F V +E V+ + R +AKT+NF IIYG+S F L+ Q  + R EA
Sbjct: 743 AAFQSGEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEA 802

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  Y+  +P +  Y++   +F R+NGYVET+ GRR +  +INS  + +R   ER A+
Sbjct: 803 KELIDTYYATYPKLKAYMQDQVDFARENGYVETVLGRRRYLKDINSSNAVVRGAAERNAV 862

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI++HK  E+    +KMLLQ+HDELVF++  +E+    ++I   M
Sbjct: 863 NAPIQGSAADIIKIAMINIHKKFEEMNCKSKMLLQVHDELVFDIHNDELEDMKKLIQGEM 922

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           + A      + VPL V +    NW E +
Sbjct: 923 QNA----YKMTVPLDVEVGTGQNWLEAH 946


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/989 (34%), Positives = 540/989 (54%), Gaps = 57/989 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++  LFL+D  + I+R +YA     R    G+  +AI GF N L  +++  + +    
Sbjct: 1   MAEQKRLFLLDAYALIFRGYYALIKNPRINSKGMDTSAIMGFMNSLLDVIRREKPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R E++P+YKANR   P+ +   +P ++   +A  IP + ++G+EADD
Sbjct: 57  HLAVCFDKGGSAERTELFPEYKANRDATPDAIRIAVPYIQDILKAMHIPVVVLEGWEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T    AEKE + V +++ DKD  QLVS    +Y   +     E   I  + K++G+ 
Sbjct: 117 IIGTLAKQAEKEDYKVFMVTPDKDFGQLVSENIFMYKPARMGNGIEIWGIPEIQKRFGVE 176

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++    + GD+ DNIPG+PG+G KTA   ++E+G++EN+L N  ++K  K +E + 
Sbjct: 177 RPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIEEFGSMENLLANTDKLKG-KMKEKVR 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           + A    LS+KL  +  D  +T       L   +  ++    + LEF +L ++    +  
Sbjct: 236 DNAALGLLSKKLATICIDCDVTFNANDYELTMPDAEKVQVLFEELEFRRLKDQFLKLFST 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +           + T+ K  A E  +         QFS      S   SE        + 
Sbjct: 296 EDDTT--ATDTSSNTKTKPQAKEAGV--------GQFSLFGGDPSTA-SETVMDFSSRKT 344

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           ++ +S        Y  +     ++ ++Q L    S  F   T  ++   ++ + IA S  
Sbjct: 345 IKDISHV------YQSVAPGMAMKLFLQNLLKQTSVCFDTETTGLNPLTAELVGIAFSWE 398

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K          +I              T  +EI+  L+ FFE+E   KIG N+KYD  
Sbjct: 399 ASKG--------FYIPFP--------ADKTEAQEIIEQLRPFFEDEAIEKIGQNLKYDIK 442

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIP 529
           VL +Y + ++G   D ML  Y+++     H++  +A+ +L+Y      + I K  K+ + 
Sbjct: 443 VLDKYNVKVKGKCFDTMLAHYLINPDM-RHNMEVLAETYLNYTPVSITELIGKKGKNQLN 501

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +      E+A E++++  QL    +P+L   K   ++  ++ P++ V++ ME+ GI 
Sbjct: 502 MRDVPLPNQTEYAAEDADITYQLAQQFKPELEEAKTQELFTDIEIPLLHVLADMELEGIN 561

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D   L  ++ ++  ++  LE +IY+ +GE+FN++SPKQLGDILF KL       KTKTG
Sbjct: 562 LDTKFLNSLAEDLDNDIKKLEADIYEEAGEEFNIASPKQLGDILFDKLALVKKPKKTKTG 621

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+  TA+D+      D+ II+N+L +R L+K+KSTY D+LP  + + T RVHT Y     
Sbjct: 622 QYS-TAEDVLSYLAKDHKIIENVLSYRGLAKLKSTYVDALPAQVEESTGRVHTDYMQTVA 680

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A +++ T +
Sbjct: 681 ATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRNKEYVLVAADYSQIELRIIAALSEETTM 740

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F+N  DIH   A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  + R+E
Sbjct: 741 IEAFKNGEDIHASTASKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRAE 800

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  Y+  +P +  Y+    +F R NGYV+T+ GRR +  +IN   + +R   ER A
Sbjct: 801 AKELIDTYYKTYPKLKSYMGGLVDFARDNGYVQTVLGRRRYLKDINGSNAIVRGAAERNA 860

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI++HK LE+ K  TKMLLQ+HDELVF+V + E+     +I   
Sbjct: 861 VNAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVFDVYKPELEEMKTLIKSE 920

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A      L VPL V + V  NW E +
Sbjct: 921 MENA----YKLEVPLDVEVGVGENWLEAH 945


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/983 (33%), Positives = 526/983 (53%), Gaps = 75/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYR++YA     R    GL  +AI GF N L ++L         +H  V
Sbjct: 2   DKLFLLDAYALIYRSYYAFIRSPRINSKGLNTSAIMGFVNTLNEVLTKEN----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ +P+YKA R + PE +   +P+++   +AF IP ++++GFEADD+I T
Sbjct: 58  AFDL-GKTFRHDAFPEYKAQREETPEDIKLSVPIIKDILRAFNIPILQVEGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPE-KM 179
               A   G    +++ DKD  QL+     +Y        E +  + V  K+GI    ++
Sbjct: 117 LAKKAGATGVDTYMLTPDKDYGQLIGEHVFMYRPRHGGGYEVLGEKEVEAKYGITSPLQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTAA L+ EYG++E +L +   +K  K +E +    E 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAAKLISEYGSIEELLAHTDSLKG-KMKEKVETAVED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVPI +  E L     +  +L      LEF  L +++           
Sbjct: 236 IKMSKFLATIRTDVPIDLNWEELKRVAPDEHKLRELFAELEFKSLADKI----------- 284

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                 +N +ENK     +++D                   +  E TP      +     
Sbjct: 285 ------LNKSENKKKEPNSQLD-------------------LFHEFTPVGPEEPKYSNYE 319

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I N  DI        T    S    T + +   ++ + ++ +  ++K  
Sbjct: 320 TVKTVQHEYKLIENQTDIINICDFFRTKSILSLDTETTSTNPIDAELVGLSFAVEEKK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +  +  +         ++I++  K  +EN   LK+G N+KYD  VLH Y
Sbjct: 378 ------AFYVPIPSNRQE--------AQKIVNIFKPIYENPDILKVGQNLKYDLEVLHNY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS-RKSSIPIDKIS 534
           G++++G   D ML  YV+      H++  +A+  L+Y      E++    K+   + ++ 
Sbjct: 424 GVTLKGKMFDTMLAHYVIQP-ELRHNMDYMAETLLNYRTIHIDELIGPRGKNQKSMRELD 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +V E+A E++++ LQL  +L  KL   +   ++  ++ P++ V++++E+ G+ ID D 
Sbjct: 483 PKEVYEYAAEDADITLQLKNVLETKLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDTDS 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           L++ SA ++K +   E  IY L+GE+FN+SSPKQ+GDILF K+K      KTKTGQ+ T+
Sbjct: 543 LRETSAILTKRMQDYEHEIYQLAGEEFNISSPKQVGDILFGKMKIVEKPKKTKTGQFVTS 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+Q+    +PI+  ILE+R L K+  TY D+LP  IN RT  +HT ++ A T TGRL
Sbjct: 603 EEVLQQLE-NKSPIVAKILEYRGLKKLLGTYVDALPKLINPRTGHIHTSFNQAITATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++ + G++IR+ FI  P     SADYSQIELR++AH++    + + F +
Sbjct: 662 SSSDPNLQNIPVRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIEAFMH 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+   IE+V+   R  AK  NF IIYGI+ + LA +L I   EA + I+
Sbjct: 722 GYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIYGITTYGLAQRLDIDNREAKELIE 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP ++EY+E+ K   R  GY ET+F RR +  +INS  +++R   ER AINAPIQ
Sbjct: 782 GYFETFPQVYEYMERAKADARAKGYAETLFHRRRYLPDINSHNATVRGYAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AMI +    +   + +K++LQ+HDEL F V  +E     +I++  M+ A  
Sbjct: 842 GSAADIIKVAMIRISDRFKRENIHSKLILQVHDELNFSVYPDEKEKVERIVLEEMQNA-- 899

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL  +    +NW E +
Sbjct: 900 --YPLRVPLVADAGWGSNWLEAH 920


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/977 (34%), Positives = 533/977 (54%), Gaps = 62/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RAF+A P L+    GL  NAI G  + + KL++ ++     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAFHALPPLTT-STGLHTNAIRGAISAIQKLMRRTQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHKLSPIYKGDRPSMPEELSEQIPYLHALIKALGIPLYSLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  A  EG  V I + DKD+ QLV+P   L D+ KE  +D   V++K+G+ P +++    
Sbjct: 117 TKRALSEGHHVLISTGDKDMAQLVNPHVKLEDSFKERVLDEAGVLEKFGVHPHQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG+L NI+ N  ++K  K  +NI +  +  ++  
Sbjct: 177 LMGDASDGIMGVPGVGAKTAAKLLTEYGSLNNIIANVDQLKG-KLSQNIKDNLDNIKIDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+ + +    L L   N  +L      LEF   +  +    + +    +    
Sbjct: 236 QLASIVCDLDLALDWHDLKLSQPNTEQLRHLYTELEFRNQLQSLDHPNNPNTPVYQQTSQ 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            I   E K  +I  E   + + +  Q                                  
Sbjct: 296 SIVKAEQKTESIAIEDHANLSSQDDQLGEA------------------------------ 325

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  ++   D +Q +Q+++     +    T  +D   ++ +  +I+    +       
Sbjct: 326 --TYHTVLEQADWEQLLQRMQQADHFAIDTETTNLDYRVAELVGFSIAFDANE------- 376

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++ L+     +   +    +++L+ +K   ENE   KIGH++KYD  +   +GI ++
Sbjct: 377 -AYYVPLAHDY--EGAPEQLSREQVLAQIKPILENEQVKKIGHHLKYDAHIFANHGIIIQ 433

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T ++I          ++I       
Sbjct: 434 GWYFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIELEVAAH 493

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L+++   ++ P+  V++ ME  GI++D   L Q+S
Sbjct: 494 YAAEDAHVTYRLYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLS 553

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E S  + +LE    +L+GE FN++SPKQ+G++LF KL    G KT TGQ+ T+   LE+
Sbjct: 554 VEFSDTMQTLENQATELAGETFNIASPKQVGEVLFDKLGIKGGKKTATGQYSTSESILEK 613

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   ++P+ + ILE R L+K+K+TY D L    +  T RVHT Y  A T TGRL+S +PN
Sbjct: 614 I---EHPLAEVILEHRGLAKLKNTYTDRLVEQSHDATHRVHTSYHQALTATGRLSSTDPN 670

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L   F+   D+HR
Sbjct: 671 LQNIPIRTPIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQQGQDVHR 730

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+  YI RYF R+
Sbjct: 731 RTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESRSYIARYFQRY 790

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ +Y+E+T+   R+ G+VETI GRR++  +I +    I+   ERAAINAP+QGSAADI
Sbjct: 791 PGVLDYMERTRQIAREQGFVETILGRRLYTPDILATNKMIKQAAERAAINAPLQGSAADI 850

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V K L   +   K+LLQ+HDELVFE         S+ I   M+      + + 
Sbjct: 851 IKLAMIAVDKILPKDQ--AKLLLQVHDELVFEADVAIADELSKQIADVMQSV----LEIS 904

Query: 960 VPLKVNIKVSNNWQEEN 976
           VP  V +    NW   +
Sbjct: 905 VPFVVEVGQGLNWDAAH 921


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/989 (34%), Positives = 541/989 (54%), Gaps = 53/989 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  LFL+D  + I+R +YA     R    G+  +AI GF N L+ +++  + +    H
Sbjct: 7   NTQKRLFLLDAYALIFRGYYALIKNPRVNSKGMDTSAIMGFMNSLFDVIKREKPD----H 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    + R E+Y DYKANR + P+ +   +P ++   +A  +P IEI+G EADD+
Sbjct: 63  LAVAFDKGGSSDRVEMYEDYKANRDETPDAIKIAVPYIQSILKAMHVPCIEIEGVEADDL 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP- 175
           I T +  AEKEG+ V +++ DKD  QLVS    +Y   +     E   I  V KK+ +  
Sbjct: 123 IGTLSKQAEKEGYQVFMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQKKFEVER 182

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE+++    + GD+ DNIPG+PG+G KTA   +++YG LE +L N  ++K  K +E ++ 
Sbjct: 183 PEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIKQYGGLEGLLENTDKLKG-KMKEKVIA 241

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            AE  RLSRKL  +  D  +T   E+  L + +   +      LEF +L ++    +  +
Sbjct: 242 NAELGRLSRKLATIMLDCDVTFNAENYELSEPDAEAVAEIFDDLEFRRLKDQFVKIFSGE 301

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A       +    T  K   IET   +       Q++     ++  +         +E  
Sbjct: 302 AEASVGAAVSNTETAKK---IETASKKAAQAGAGQYNLFDANSTIADD--------VEEA 350

Query: 356 QKLSQYPINNDSYTKIVNTKDI-QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                       Y  +  +    + ++Q L    S  F   T  ++   ++ + IA S  
Sbjct: 351 SSRQTIKSKEHHYQSVATSGMGLKLFLQNLNKQTSVCFDTETTGLNPLTAELVGIAFSWD 410

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K          ++  S +  +         ++++  L+ FFENE   K+G N+KYD  
Sbjct: 411 AGKG--------FYLPFSDNKEE--------AQQLIEELRPFFENEDIQKVGQNLKYDIK 454

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIP 529
           VLH+Y I +RG   D ML  Y+++     H++  +A+ +L+Y+   I     K  K+   
Sbjct: 455 VLHKYDIEVRGPLFDTMLAHYLINPDM-RHNMDVLAETYLNYSPVSIETLIGKKGKNQKS 513

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +      E+A+E++++ LQL      +L       +++ ++ P++ V++ ME+ GI 
Sbjct: 514 MRDVPLEDQTEYAVEDADITLQLKEHFEKELGDANTQKLFDDIEIPLLRVLAAMELEGIN 573

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D+  L  ++ +++ ++ +LE +IY  +GE+FN+ SPKQLG+ILF KLK      KT+TG
Sbjct: 574 LDKAFLNNLAEDLNNDIATLEASIYKEAGEEFNIGSPKQLGEILFDKLKLVEKPKKTRTG 633

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+  TA+D+      D+ II+N+L++R L+K+KSTY D+LP  + +   RVHT Y     
Sbjct: 634 QYS-TAEDVLSYLAADHTIIQNVLDYRGLAKLKSTYVDALPEQVEEDG-RVHTDYMQTVA 691

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A +++   +
Sbjct: 692 ATGRLSSNNPNLQNIPIRTERGRQVRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTM 751

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F+N  DIH   AA++F V I +V+ + R +AKT+NF IIYG+S F L+ Q  + RSE
Sbjct: 752 IEAFKNGEDIHASTAAKVFNVPINEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLTRSE 811

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + D I  Y+  +P +  Y+    +  R++GYV T+ GRR +  +INS    +R   ER A
Sbjct: 812 SKDLIDTYYKTYPKLRNYMSNLVDDAREDGYVSTVLGRRRYLKDINSSNGVVRGAAERNA 871

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI++HK L +    TKMLLQ+HDELVF+VP+ E+     ++   
Sbjct: 872 VNAPIQGSAADIIKVAMINIHKKLAEGNFKTKMLLQVHDELVFDVPKNELEDIKTLVKTE 931

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A      L VPL V + V N+W E +
Sbjct: 932 MESA----YTLSVPLDVEVGVGNDWLEAH 956


>gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
          Length = 921

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/982 (33%), Positives = 516/982 (52%), Gaps = 74/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    G   +AI GF N L +++Q  +     SH  V 
Sbjct: 3   KLFLLDAYALIYRSYYAFIKNPRINSKGFNTSAILGFVNTLHEVIQKEQ----PSHLGVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E + DYKA R K PE +   +P+++   +A  IP +E++G+EADD+I T 
Sbjct: 59  FDPSGPTFRDEAFADYKAQREKTPEDIKLSVPIIKQILEAMNIPILEVKGYEADDVIGTL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIP-PEKMV 180
              A        +++ DKD  QLV     +Y        E + +E + +K+ I  P +++
Sbjct: 119 ATQASAFDMETYMLTPDKDYGQLVKENVFIYRPRHGGGYEILGVEQIKEKYQIESPSQVI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GDS DN PG PG+G KTA  L+ ++ ++ N+L N +++K  K +E +    +  
Sbjct: 179 DILALMGDSADNFPGCPGVGEKTAIKLINDFKSINNLLENTNQLKG-KLKEKVEGAVDDI 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S  L  ++TDVPI + L  L L   N  +L +    LEF  L N+     +       
Sbjct: 238 KMSNFLATIKTDVPIELNLTDLQLTPPNEEKLRALFDELEFRTLANKFFKKTE------- 290

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                   T   SQ +   + TS    E         + +    
Sbjct: 291 ---------------------NIQTKDNSQLNLFEEFTSNDAVEP--------QFENYKT 321

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  I   +DI      L T    S    T +++A  ++ + ++ S   Q+   
Sbjct: 322 LFDTKYNYKLIEKEEDINNLCDLLLTKRIVSLDTETTSLNALEAELVGLSFSVSPQE--- 378

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +          +    ++I++  +  +ENE   K+G NIKYD  VL  YG
Sbjct: 379 -----AFYVPIPN--------EQQKAQKIVNAFQPLYENEEIEKVGQNIKYDIEVLRNYG 425

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKISD 535
           I+M+G   D M+  Y+L      H++  +A+ +L Y    I        K  + +  ++ 
Sbjct: 426 ITMKGPLFDTMIAHYLLQP-ELRHNMDDMAETYLRYKTIHIDQLIGAKGKDQLNMRSLAP 484

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            Q+ ++A E++++ LQL  +  PKL    L  +++ ++ P+I V+++ME  G+++D   L
Sbjct: 485 EQIVDYACEDADITLQLKNIFEPKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQAL 544

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTA 654
            +VS   ++ L   E+ IY+L+GE FN+SSPKQ+G ILF KLK      KTKTGQ+  T+
Sbjct: 545 SEVSKTFNEQLSLYEQKIYELAGETFNISSPKQVGTILFEKLKVAEKPKKTKTGQY-VTS 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           ++  Q     +PII  IL++R L K+ STY D+LP  +N +T  +HT ++ A+T TGRL+
Sbjct: 604 EEELQKLINKHPIIDEILKYRGLKKLLSTYVDALPKLVNPKTGNIHTSFNQATTATGRLS 663

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++ + G++IR+ FI        SADYSQIELRI+AH++    + + F   
Sbjct: 664 SSDPNLQNIPVRGEDGKEIRKCFIPNEGCLFFSADYSQIELRIMAHLSGDENMIEAFIEG 723

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AA+I+   I++V+   R  AK  NF IIYGI+ F LA +L I R+EA   I+ 
Sbjct: 724 HDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIYGITVFGLAERLNIERNEAKQLIEG 783

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP +  Y+E+ K   +QNGYVET   RR +  +INS  +++R   ER AINAPIQG
Sbjct: 784 YFSTFPQVQAYMEQCKETAKQNGYVETFMHRRRYLADINSQNATVRGYAERNAINAPIQG 843

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+ +++   +  + +KM+LQ+HDEL F V   E     +I++  M+ A   
Sbjct: 844 SAADIIKLAMVRIYERFNNEGIKSKMILQVHDELNFSVLPNEKEQVEKIVLEEMQNA--- 900

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L+VPL  +     NW E +
Sbjct: 901 -FALKVPLIADAGWGANWLEAH 921


>gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 529/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+F
Sbjct: 5   PLVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +      +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     L                   
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAEL------------------- 280

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                          +F S  +   + ++++  Q+L +E     
Sbjct: 281 -------------------------------EFKSWIEDLQR-DAKRAGQELAVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL      +F   ++  DA  ++ + ++ +T    +
Sbjct: 305 PTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFATQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q  ++A E +++ L+L  +   +L     L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 529/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+F
Sbjct: 5   PLVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +      +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     L                   
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAEL------------------- 280

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                          +F S  +   + ++++  Q+L +E     
Sbjct: 281 -------------------------------EFKSWIEDLQR-DAKRAGQELAVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL      +F   ++  DA  ++ + ++ +T    +
Sbjct: 305 PTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFATQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q  ++A E +++ L+L  +   +L     L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVGVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 921

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/991 (34%), Positives = 527/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+F
Sbjct: 5   PLVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +      +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     L                   
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAEL------------------- 280

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                          +F S  +   + ++++  Q+L +E     
Sbjct: 281 -------------------------------EFKSWIEDLQR-DAKRAGQELAVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL      +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV ++ V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELDNVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 921

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/991 (34%), Positives = 525/991 (52%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++Y AF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYPAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G   + +  N  ++        K     + E+ E
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIRGAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +   L+     LEF   I  +          
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDTLMELYAELEFKSWIEDLQR-------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                    +   E T ++  +E  +  
Sbjct: 292 --------------------------------------DAKRAGQELTVEEPTVEDRE-- 311

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 312 -------AAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVSEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V +NW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGHNWDEAH 921


>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
 gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
          Length = 898

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/982 (34%), Positives = 523/982 (53%), Gaps = 90/982 (9%)

Query: 1   MQKENHLF-LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++  L  LVDGSS++YRA+YA P L+    G P  A+ G  +ML KLL     E   +
Sbjct: 1   MSEQYPLLILVDGSSYLYRAYYALPPLTT-PAGEPTGAVYGVVSMLRKLLA----EYDTA 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           +F V+FD    TFR+E++  YKANR  +P+ L  QL  ++    A G+  IEI+G EADD
Sbjct: 56  YFGVVFDAKGKTFRDELFEAYKANRAPMPDELRVQLEPLKRIVCALGLSRIEIEGVEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T    A   G    I + DKD+ Q+V+    L +T+    +D   V  K+G+PPE+M
Sbjct: 116 VIGTLAVRASVAGLRTIIATGDKDMAQIVNDNVVLLNTMSGTWLDAAAVQDKFGVPPERM 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V   AL GD++DNIPG+P +G KTAA  L +YG+L+ +L     IK  K  E++ E+ E 
Sbjct: 176 VDYLALVGDAVDNIPGVPRVGPKTAAKWLGQYGSLDALLECVDEIKG-KVGESLREHLEQ 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             LSR+L  +R      + L                                 D D   +
Sbjct: 235 LALSRELATIRC----DLDL---------------------------------DLDPKAM 257

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P   D++            + R     +       +     + EQ              
Sbjct: 258 RPRAPDVD--------ALARLYRQHAFSSWLTQLGDEHPGAGDPEQAA------------ 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  ++    +QQW+Q+L      +F + T +++   ++ + ++ +    +  
Sbjct: 298 ------VHYETVLEEAGLQQWLQRLAGAEVFAFDLETTSLNYMDAEIVGLSFAVEPAR-A 350

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V  I   +S    +           +L  L+   E+    K+G N+KYD  VL  Y
Sbjct: 351 AYVPVAHIGQGVSPQLERG---------HVLEQLRPLLEDPRRAKLGQNLKYDMSVLAHY 401

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
            I++RG   D ML SY+LDS  + HD+ S+A K+L +     +++       +  D+++ 
Sbjct: 402 DIALRGVRFDTMLESYILDSTATRHDMDSLALKYLGHRTIKFEDVAGKGAKQLTFDQVAI 461

Query: 536 SQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            +  E+A E++++ L+L  +L PKL  +     V+  ++ P++ V+S+ME TG+ + ++L
Sbjct: 462 ERATEYAAEDADIALRLHRVLYPKLRQLPGPERVFHAIEMPLLPVLSRMERTGVLVSREL 521

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   SAE+++ L  +E ++Y  +G +FNL SPKQ+  +L+ +   P  AKT  G   T  
Sbjct: 522 LAAQSAELAQRLAEIEASVYRAAGCEFNLGSPKQIQAVLYDRQGLPVLAKTPKGAPSTAE 581

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             L+++     P+ + ILE R L+K+KSTY D LP  I+ RT RVHT Y  A   TGRL+
Sbjct: 582 SVLQELAAT-YPLPRMILEHRALAKLKSTYTDKLPLLIHPRTGRVHTSYRQAVAATGRLS 640

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP+++  G++IRR FI+    +L++ DYSQ+ELRI+AH +    L++ F   
Sbjct: 641 SSDPNLQNIPVRSPEGRRIRRGFIARQGYRLLAVDYSQVELRIMAHFSGDERLHRAFAAG 700

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AAE+F   +E+V+ + RR AK INF +IYG+S + LA QL I R  A  Y++R
Sbjct: 701 EDIHRATAAEVFATALEQVTAEQRRAAKAINFGLIYGMSAYGLARQLGIERDAAQHYVER 760

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  ++E+ +   R+  YVET+FGRR++  EIN+  +  R   ER AINAP+QG
Sbjct: 761 YFERYPGVKAFMERIRREARERQYVETVFGRRLYLPEINASNAQRRQAAERTAINAPMQG 820

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI +RAM+ V + L+  +    M+LQ+HDELVFEVP  ++   ++ I   M  A   
Sbjct: 821 SAADIIKRAMVRVDQWLQSEREDVFMVLQVHDELVFEVPTPDVQAVAERIRAFMVGAA-- 878

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL V     +NW+E +
Sbjct: 879 --ELSVPLTVEAGWGDNWEEAH 898


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/982 (34%), Positives = 536/982 (54%), Gaps = 75/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    GL  +AI GFCN L ++L   +     +H AV 
Sbjct: 3   KLFLLDAYALIYRSYYAFINSPRINSKGLNTSAIMGFCNTLNEVLTKEQ----PTHIAVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+  +TFRNE +P YKA R   PE +   +P+++    A+ IP ++++GFEADDII T 
Sbjct: 59  FDH-GLTFRNEAFPAYKAQREATPEDIKKSVPIIKQILGAYHIPCLQVKGFEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPE-KMV 180
              + K+G    +++ DKD  QLV     +Y        E +  + +  K+ I    +++
Sbjct: 118 AMKSGKKGIDTYMLTPDKDYGQLVGEHVWMYRPRHGGGYETLGEKEICAKYSIDSPLQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD+ DN PG PG+G KTA  L+ ++G++  +L     IK  K RE +    E  
Sbjct: 178 DILALMGDTADNFPGCPGVGEKTAIKLINQFGSINEMLQRTQEIKG-KLREKVENAIEDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S+ L  +RTDVPI + L+ L +E+ N   L   L  LEF  L NR+            
Sbjct: 237 KMSQFLATIRTDVPIDLKLDDLQVEEPNETELAKILHELEFKTLANRMLNK--------- 287

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                +++T  T++  +L +++S  NS+  P+    E L+ +S 
Sbjct: 288 --------------------SKNSTKNTNKQLNLFEESSP-NSQVDPKNKSFESLKTVSH 326

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I N +++++      T    S    T + +A  ++ + ++ S        
Sbjct: 327 ------EYKLIDNEEEMRKLCDFFLTNKILSLDTETTSTNAMEAELVGLSFSVAPH---- 376

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               +  ++ +  +  Q        T +I++  K  +ENE  LK+G NIKYD  VL RYG
Sbjct: 377 ----QAFYVPIPANREQ--------TIKIVNLFKPAYENEAILKVGQNIKYDMEVLSRYG 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS-RKSSIPIDKISD 535
           I ++G   D M+  Y+L      H++  +A+ +L Y     +E++    K    +  ++ 
Sbjct: 425 IELKGNLFDTMIAHYLLQP-ELRHNMDYMAEVYLRYQTVHIEELIGPRGKGQKNMRDLAP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + E+A E++++ LQL  +L PKL   ++  ++ +++ P++ V++QME+ G++ID   L
Sbjct: 484 NDIYEYACEDADITLQLKNILEPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRIDTKAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTA 654
           ++VS   +K +  LE  I+ L+GE FN+SSPKQ+GDILF KL+      KTKTGQ+  T+
Sbjct: 544 QEVSESFTKRMNDLEAQIHQLAGESFNVSSPKQVGDILFEKLQIAEKPKKTKTGQF-VTS 602

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           ++  Q     N I+  IL++R L K+  TY D+LP  IN +T  +HT ++   T TGRL+
Sbjct: 603 EEELQKYATGNEIVTLILDYRGLKKLLGTYVDALPKLINPQTGHIHTSFNQTVTATGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++ + G++IR+ FI        SADYSQIELR++AH++    + + F+  
Sbjct: 663 SSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIEAFQEG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AA+++G  ++ V+   R  AK  NF IIYGI+ F LA +L I R EA   I  
Sbjct: 723 YDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRGEAKQLIDG 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP +  Y+E+ K+  R+ GYVET F RR +  +INS  +++R   ER AINAPIQG
Sbjct: 783 YFTTFPQVQSYMEQAKDMAREKGYVETFFHRRRYLPDINSQNATVRGFAERNAINAPIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI +++  +   + +KM+LQ+HDEL F V   E     +I++  M+ A   
Sbjct: 843 SAADIIKVAMIRIYERFKRENIQSKMILQVHDELNFSVLPSEKEQVERIVLEEMQNA--- 899

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L+VPL  +    +NW E +
Sbjct: 900 -YQLKVPLVADAGWGHNWLEAH 920


>gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 921

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/991 (34%), Positives = 526/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+F
Sbjct: 5   PLVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +      +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     L                   
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAEL------------------- 280

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                          +F S  +   + ++++  Q+L +E     
Sbjct: 281 -------------------------------EFKSWIEDLQR-DAKRAGQELAVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL      +F   ++  D   ++ + ++ +     +
Sbjct: 305 PTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFAFVTQSNGTDGQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/976 (32%), Positives = 502/976 (51%), Gaps = 84/976 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+D    IYRA++A      R  DG   +AI GF  ML++ +    KE    +  V
Sbjct: 2   KPLFLIDAYGLIYRAYFALIRAPMRTKDGRNTSAIYGFFRMLFRFV----KEYDPVYCGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + D    TFR + +  YKA R K PE L PQ+P++    +A G   + + GFEADD++ T
Sbjct: 58  VLDSLTPTFREKTFEAYKATRQKTPEDLHPQIPVIEEILEALGFATVRMNGFEADDVMGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVC 181
              +A+ EG    ++S DKDL QLV+    +    K++   +D E V +KWG+  +++V 
Sbjct: 118 LAAMAQAEGRPCFVVSGDKDLAQLVTKGVRIVRMDKDDFVILDEEGVKEKWGVRADQIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ DNIPG+ GIG KTA  LL EYG+LE +  +   +     R+ +    E A 
Sbjct: 178 FLALVGDASDNIPGVEGIGEKTARRLLAEYGSLEGVYAHLDELSPS-LRKKLEGGRERAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LSR L  +RTD+ +++ +E L   +    R      A +   L   V  +         P
Sbjct: 237 LSRDLATIRTDLELSLTIEDLRRREPEVQRARELFLAYDIRSLAQEVGGS---------P 287

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            V +  T E +G +                                              
Sbjct: 288 AVGEKPTLEVEGPSRAG------------------------------------------- 304

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                SY  + +   + +WV K    G  +    TD +D    + + ++++  + +    
Sbjct: 305 ----VSYEVVTDRASLARWVDKALERGVVAVDTETDGLDPLTCRLVGVSLAVDEGR---- 356

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 ++ L+    +           +   L     ++   K+G N+K+D  VL R+G+
Sbjct: 357 ----ACYVPLAAPDVRPLPADV-----VREVLTPLLASQKVSKVGQNLKFDYHVLRRWGV 407

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              G F D M+ +++L+S    +++  +A+K+L +         +     + +  ++   
Sbjct: 408 RPEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTIHYKDVVEKGASFETVPVAEAGV 467

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E++++ L+L  +L+ +L    L  V+  ++ P++ ++++ME  GI +D + L     
Sbjct: 468 YAAEDADIALRLSRVLKERLEAGDLGRVFYEMEMPLLSILARMEEWGIGLDGEALSAFGR 527

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+ + + ++E  I+DL G +FN+ S KQL ++LF +   P   KTKTG + T    LE++
Sbjct: 528 ELDERISNIENEIFDLVGHEFNVGSTKQLQEVLFVERGLPPVKKTKTG-FSTDTSVLEEL 586

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+   +LE+R L+K+K+TY D LP  +N  T R+HT++S   T TGRL+S +PNL
Sbjct: 587 AAQD-PVAAKVLEYRSLTKLKNTYVDVLPGLVNPETGRLHTWFSQVGTATGRLSSKDPNL 645

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPIKT+ G++IR AF+       +SADYSQIEL ILAH++    L + F    D+HR 
Sbjct: 646 QNIPIKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSGDPALCRAFREGEDVHRA 705

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
             + +FGV  E V+P+ RR AKTINF +IYG+S FRL+ +L IPR EA  +I  YF  + 
Sbjct: 706 TGSLLFGVPPETVTPEQRRIAKTINFGVIYGMSAFRLSRELGIPRKEAERFINAYFTTYA 765

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  +IE+T     + GYV T+FGR+     I S   + +   ER A+N PIQGS ADI 
Sbjct: 766 GVRAFIERTIAEAEEKGYVTTLFGRKRPLPYITSRNKTQKTGAERIAVNTPIQGSGADII 825

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI +   +    LA++M+LQ+HDEL+FEVP EE+    +++   ME      + L V
Sbjct: 826 KLAMIDLDAQMRRMGLASRMILQVHDELIFEVPPEELEVMKRLVRERMEGV----VRLSV 881

Query: 961 PLKVNIKVSNNWQEEN 976
           PL+V I V  NW E +
Sbjct: 882 PLRVEIGVGRNWGEAH 897


>gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 921

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/991 (34%), Positives = 527/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+F
Sbjct: 5   PLVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +      +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     L                   
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAEL------------------- 280

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                          +F S  +   + ++++  Q+L +E     
Sbjct: 281 -------------------------------EFKSWIEDLQR-DAKRAGQELAVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL      +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFTFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPGKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/983 (33%), Positives = 529/983 (53%), Gaps = 75/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYR++YA     R    GL  +A+ GF N L ++L   R     +H  V
Sbjct: 2   DKLFLLDAYALIYRSYYALLRSPRINSKGLNTSAVLGFMNTLNEVLTKER----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+   TFR+E +P YKA R + PE +   +P+++   +A+ IP +++ GFEADDII T
Sbjct: 58  AFDH-GKTFRHEAFPQYKAQREETPEDIKLSVPIIKRILEAYRIPILQVDGFEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGI-PPEKM 179
                 +EG A  +++ DKD  QLV+    +Y        E +  + V  K+GI  P ++
Sbjct: 117 VATRFGREGVATYMLTPDKDYGQLVADNVYIYRPRHGGGYEVMGPKEVQAKYGIASPLQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L AL GDS DN PG PG+G KTAA L+ E+G++EN++ N +++K  K RE +    E 
Sbjct: 177 VDLLALMGDSADNFPGCPGVGEKTAAKLIGEFGSVENLIANTAQLKG-KLREKVEGAVED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVP  I L+ L +E  +  +L      LEF     R+    +      
Sbjct: 236 IKMSKFLATIRTDVPTDIRLDDLKVESPDEAKLDQIFTELEFNSFRKRMLNKAEKKQKT- 294

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                         Q    ++  +  +     +    E L+ + 
Sbjct: 295 ---------------------------DNLQLDFFAENPT--DGPSVAENANFETLKTIP 325

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I   ++ ++      T    S    T + +A  ++ + ++ +  ++K  
Sbjct: 326 H------EYQLIETEEEARRLYDFFRTNKILSLDTETTSTNAIEAELVGLSFAVEERK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +  +  +          +I++  K  +E+   LK+G NIKYD  VL  Y
Sbjct: 378 ------AFYVVIPANREE--------ALKIVAIFKPLYEDPEILKVGQNIKYDIEVLRHY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS-RKSSIPIDKIS 534
           G+ + G   D M+  Y+L      H++  +A+ +L Y     +E++    ++   +  +S
Sbjct: 424 GVEVAGPMFDTMIAHYLLQP-ELRHNMDYMAEVYLGYRTVHIEELIGPRGRNQKNMRDLS 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + + E+A E++++ L+L  +L PKL    +  ++  ++ P++ V++ ME+ G+ +D + 
Sbjct: 483 PTDIYEYACEDADITLRLKNVLEPKLDEAGVARLFRDIEMPLVGVLADMELNGVCLDTEA 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           L + S   +K + ++E++IY+L+GE+FN+SSP+Q+GDILF K+K      KTKTGQ+ T+
Sbjct: 543 LHETSEVFNKRMTAIEQHIYELAGEQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTS 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+Q+    +PII  IL +R L K+ STY D+LP  IN RT R+HT ++   T TGRL
Sbjct: 603 EEVLQQLRS-KSPIIDEILNYRGLKKLLSTYVDALPKLINPRTGRIHTSFNQTVTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++ D G++IR+ FI  P     SADYSQIELRI+AH+++   + + F  
Sbjct: 662 SSSDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFRE 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA I+  +I +V+P  R+ AK  NF IIYGI+ + LA ++ I   EA D I 
Sbjct: 722 GFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTYGLAQRMDISNGEARDLID 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +  Y+E+ K   R+ GY ET+F RR +  +INS  +++R   ER AINAPIQ
Sbjct: 782 GYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINSHNATVRGFAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GS ADI + AM+ +H+  +   + +KM+LQ+HDEL F V  EE     +I+V  M+ A  
Sbjct: 842 GSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFPEEKEQVERIVVEEMQGA-- 899

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL  +     NW E +
Sbjct: 900 --YKLRVPLVADAGWGKNWLEAH 920


>gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM
           22836]
          Length = 933

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/983 (34%), Positives = 530/983 (53%), Gaps = 63/983 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    G   +A+ GF N L +LL+        +H AV 
Sbjct: 2   KLFLLDAYALIYRSYYAFIKNPRVNSKGQNTSAVFGFVNTLEELLRKEN----PTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR++ Y  YKA R + PE +   +P+++    A+ I  +E+  +EADD+I T 
Sbjct: 58  FDPPGGTFRHDAYEKYKAQRQETPEDIRAAVPIIKEIIAAYNIKELEVPYYEADDVIGTI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP-PEKM 179
              AEKE   V +++ DKD  QL S    +Y         + +D + +++K+ +  P++M
Sbjct: 118 AKKAEKENIDVYMMTPDKDYGQLTSDHVFMYKPKFAGSGFDVLDAKAIMEKYELSSPDQM 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L GD+ DNIPG PG+G KTA  LL+EYG +EN+L + S IK    ++ + +  E 
Sbjct: 178 IDLLGLMGDASDNIPGCPGVGPKTAQKLLEEYGTIENLLEHTSEIKGA-LKQRLEDNKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ L  ++TDVPI    +     + N  ++ +  + LEF  LINRV  T    +  +
Sbjct: 237 IIFSKFLATIKTDVPIDFNKDEFARREINAEKISAIFEELEFRTLINRVLKTDSIPSHPV 296

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                     I+   F+ L       +   T     L+ L+ + 
Sbjct: 297 R------------------NTTTHEAIQGDLFAELLPPVDSSSDTTTVNYSALQELKDIP 338

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                  SY  +   K+I + +  L    S  F   T  +D   S+ + ++ +  + +  
Sbjct: 339 H------SYHLVEEEKEILELISTLSNQESCCFDTETTGLDPIVSELVGMSFAFKEGE-- 390

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +     +         K+++   + FFENE  LKIG NIKYD +VL +Y
Sbjct: 391 ------AYYVPVPADFDE--------AKKLIDKFRPFFENEKILKIGQNIKYDIIVLKKY 436

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK-SRKSSIPIDKIS 534
            I +RG   D M+  Y+++     H++  +A+ +L Y      E++    K+ + +  + 
Sbjct: 437 DIHVRGKLFDTMIAHYLINP-ELRHNMDYMAETYLKYRTIHIDELIGAKGKNQLNMRSLR 495

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q+ ++A E+++V L+L  +L   +  + L  ++  ++ P+I V++ ME TG+++D   
Sbjct: 496 PDQISDYACEDADVTLKLKRILEKAIEKQDLSKLFYEIELPLIYVLADMEFTGVRLDTVA 555

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           L + S  ++  L ++E  I+ L   +FN++S KQ+G++LF KLK      KTKTGQ+ T+
Sbjct: 556 LGEYSKTLTIELQNIESEIFKLGETEFNINSAKQVGEVLFDKLKIIDKPKKTKTGQYVTS 615

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE I    +PI+  ILE+R L K+ STY D+LP  +  +  ++HT ++   T TGRL
Sbjct: 616 EETLESIKNT-HPIVNKILEYRGLKKLLSTYIDALPLLVEPKDGKIHTSFNQTVTATGRL 674

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S  PNLQNIPI+   G++IR++FI+       SADYSQIELRI+AH+++   + + F +
Sbjct: 675 SSTNPNLQNIPIRDAQGREIRKSFIADEGCLFFSADYSQIELRIMAHLSQDPSMVEAFNS 734

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+ + I++V+  MRR AKT NF IIYGIS F LA +L IPR EA + I 
Sbjct: 735 GEDIHAATAAKIYKLKIDEVTSDMRRKAKTANFGIIYGISVFGLAERLTIPRGEAKELID 794

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P + EY++K     R+  YVET+FGR+ +  +INS  +++R   ER AINAPIQ
Sbjct: 795 GYFETYPKVKEYMDKCITDAREKTYVETVFGRKRYLPDINSRNATVRGYAERNAINAPIQ 854

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM ++ K  E   + +KM+LQ+HDEL F V E EI    +I++  ME A  
Sbjct: 855 GSAADIIKVAMNNIFKRFEKENIKSKMILQVHDELNFNVLENEIDKVQKIVIEEMENA-- 912

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL+ +     NW E +
Sbjct: 913 --YKLAVPLRADCGKGKNWLEAH 933


>gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
 gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
          Length = 926

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/982 (34%), Positives = 532/982 (54%), Gaps = 77/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAFYA   LS   DG P NA+ G   ML  L    R E  A + AV+
Sbjct: 12  KTLLLVDGSSYLYRAFYALTHLS-APDGTPTNAVYGVLKMLKSL----RAEQPADYCAVV 66

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+ ++PDYKA RP +P+ L PQ  ++    +  G   ++I   EADD+I T 
Sbjct: 67  FDAKGKNFRHALFPDYKATRPPMPDDLRPQAEMLPELVELMGWKVLKINDVEADDVIGTL 126

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  +   V I + DKD+ QLV+    L +T+K E +D   V++K+G+ PE++    A
Sbjct: 127 AVQAAAQNMNVIISTGDKDMAQLVNTQITLVNTMKNETLDSAGVMQKFGVKPEQIRDFLA 186

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD +DN+PG+   G KTAA  L E+G+L+ I+  A   K  K  EN+        LS 
Sbjct: 187 LMGDKVDNVPGVEKCGEKTAAKWLAEFGSLDEIMRRADEFKG-KIGENLRAALPQLPLSY 245

Query: 245 KLVMLRTDVPI----TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +LV ++TDV +       L+ L  ++ N  +L+   + L F   +               
Sbjct: 246 ELVTIKTDVDLHESLPNGLDDLARQNPNWQQLVPRFRELGFKTWLKEAENQL-------- 297

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                           ++ +      +   P     E ++   +
Sbjct: 298 --------------------------------AIGETGDLFATPAAPVFRQPENIKIFDE 325

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P    +Y  +  ++ +   V +L++         T+++D   +K + I+++        
Sbjct: 326 LP-KELNYQVVTTSEQLANLVVRLQSCRQIGLDTETNSLDPMTAKLVGISMAFAAG---- 380

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               + ++I ++      +  +    +EI   LK F E+++  KIG N+KYD+ +   +G
Sbjct: 381 ----DAVYIPVAH-----TLAEQLDWQEISGSLKPFLEDKNLAKIGQNLKYDQHIFKNHG 431

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           I ++G   D ML SY+++S  S H++  +A +WL     + + +       I    ++ +
Sbjct: 432 IDLQGIAGDAMLASYIVESHLS-HNLDDLAMRWLGLETISYESLCGKGAKQISFADVNVA 490

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           Q  E+A ++++  L++   LR ++   + + +YE ++ P+  V+ QME  G+ +D   L 
Sbjct: 491 QATEYACQDADFALRIEQHLRTQMDA-QQIEIYENMELPVAQVLFQMERAGVHLDCAELA 549

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTTA 654
           Q S E+   LL LE+  YDL+G+ FNL+SPKQL +ILF +L  P+    KT  G + T  
Sbjct: 550 QQSTELGTELLQLEQQAYDLAGQPFNLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDE 609

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++   D P+ K IL+ R L+K+KSTY D LP  IN +T RVHT Y+ A  +TGRLA
Sbjct: 610 SVLEKL-ADDYPLPKLILQNRSLAKLKSTYTDKLPEMINPQTGRVHTNYAQAVAITGRLA 668

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPI+T  G+++RRAF +P    ++SADYSQIELRI+AH++    L   F+N+
Sbjct: 669 SNNPNLQNIPIRTKQGRRVRRAFNAPDGYLIVSADYSQIELRIMAHLSGDATLQAAFQNN 728

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+HR  AAE+FGV  EK++ + RR+AKTINF +IYG+  + LA  L I    AA +IKR
Sbjct: 729 EDVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMGEYGLAKSLGIDNVSAAMFIKR 788

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+ G+ EY+++TK   +Q G+VET+FGR+++  +I+S  +  R   ERAAINAP+QG
Sbjct: 789 YFARYTGVAEYMQRTKEHAQQFGFVETLFGRKLYLPDIHSNHAMKRAGAERAAINAPMQG 848

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +A+D+ ++AMI V K L + K  +++++Q+HDELV EV E E+      +   M +    
Sbjct: 849 TASDLIKKAMIDVSKFLMNQK--SRLVMQVHDELVLEVHESELDWIQIKLPEIMSQVGAE 906

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL   + V  NW + +
Sbjct: 907 V--LNVPLLAEVGVGKNWDDAH 926


>gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 921

 Score =  901 bits (2328), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/991 (34%), Positives = 528/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+F
Sbjct: 5   PLVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +      +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     L                   
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAEL------------------- 280

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                          +F S  +   + ++++  Q+L +E     
Sbjct: 281 -------------------------------EFKSWIEDLQR-DAKRAGQELAVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL      +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q  ++A E +++ L+L  +   +L     L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
 gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
          Length = 921

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/984 (33%), Positives = 522/984 (53%), Gaps = 76/984 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+D  + IYRA+YA     R    G   +AI GF N L    ++ R++      A+
Sbjct: 2   KRLFLLDAYALIYRAYYALIRSPRINSKGENTSAIYGFVNTL----EDIRRKEAPDMLAI 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E YPDYKA R   PE +   +P+++   +A+ IP IE++GFEADD+I T
Sbjct: 58  AFDPSGPTFRHEAYPDYKAQREATPEDIKRSVPIIKDIIRAYNIPIIEVKGFEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
               A  EG  V +++ DKD  QLV P   +          E + +E V +K+G+  P++
Sbjct: 118 VAKRAAAEGIEVRMVTPDKDYAQLVGPNVLMQRPGHGNAPWEILGVEEVCQKYGLTDPKQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++   AL GD+ DNIPG PG+G KTA  L+Q +G++EN+L +   +K   +R+ + +  +
Sbjct: 178 VIDYLALMGDAADNIPGCPGVGPKTATTLIQRFGSIENLLEHTDELKGA-QRQKVEDNVD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R S+ L  ++TDVP+ +  E   L + +  +L    +ALEF   ++R   + +     
Sbjct: 237 KIRFSKFLTTIKTDVPLDVNWETWKLTEPDFDQLQPIFEALEFRTFLSRWQKSQN----- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                + ++  I+   F+ L+D+ +    E +           +
Sbjct: 292 ---------------------LQKNQAIQGDLFAMLADEDAGDAKESS-----------I 319

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           S        Y  + N  +I+ +  +L T    +    T   +A  +K + ++ ST   + 
Sbjct: 320 STLENTEHEYHLLDNEDEIRDFCAQLLTFEKVALDTETTDKEAIKAKLVGMSFSTAPGR- 378

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I +S  T           K  L  L+ F+E    L +G N+KYD  VL  
Sbjct: 379 -------AWYIPVSRETD--------TVKARLELLRPFWEKADVLIVGQNLKYDLTVLAS 423

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKI 533
           YG+  +G   D ML  YV+     +H++  +A  +L+Y    I        +    +  +
Sbjct: 424 YGVKPKGRLFDTMLSHYVVQP-ELAHNMDYLASVYLNYRPIPIEQLIGPKGRGQRNMGDL 482

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               V E+A E+++V L+L   L   +    +  ++  ++ P++ V+++ME  G+ +D +
Sbjct: 483 DPKDVFEYACEDADVTLRLMAPLEKAMRENGVEQIFYDIEMPLMPVLARMERNGVCLDTN 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKT 652
            L+++S+E +  ++ LE  IY L+G  F ++SPKQ+G++LF +LK      KTK+GQ+  
Sbjct: 543 ALQEISSEFTARMVKLEAEIYQLAGHPFMITSPKQVGEVLFGELKIDEKAKKTKSGQYS- 601

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T++++       + I+  IL  R L K+ STY ++LP  +N +T  +HT ++ A T TGR
Sbjct: 602 TSEEVLVRLSHKHEIVGKILAHRGLKKLLSTYVEALPKLVNPQTGHLHTTFNQAVTSTGR 661

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIP++ + G++IR+AFI        SADYSQIELRI+AH++K   L + F+
Sbjct: 662 LSSSNPNLQNIPVRGEDGREIRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLIEAFK 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AA IF  ++ +VS   RR AKT NF IIYGIS F LA ++ + R+EA + I
Sbjct: 722 KGEDIHAATAARIFKKDLSEVSRDERRKAKTANFGIIYGISAFGLAERMDVSRTEARELI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + EY++ +    R+ GY+ET FGRR +  +INS  + +R   ER A+NAPI
Sbjct: 782 DNYFSTYPKVKEYMDSSIEKARRRGYIETAFGRRQYLADINSHNAVVRGYAERVAVNAPI 841

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI + + L    L TKM+LQ+HDEL F +P  E+  A  IIV  ME A 
Sbjct: 842 QGTAADIIKLAMIRIDQRLRAEGLKTKMILQVHDELNFSIPPAELECAKAIIVSEMESA- 900

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                + VPL+ +     NW E +
Sbjct: 901 ---YQMSVPLEADCGTGKNWLEAH 921


>gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a]
 gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a]
          Length = 921

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 529/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G   + +  N  ++        K     + E+ E
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIRGAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +   L+     L                   
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDTLMELYAEL------------------- 280

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                          +F S  +   + ++++  Q+L +E     
Sbjct: 281 -------------------------------EFKSWIEDLQR-DAKRAGQELTIEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTAEAREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+   +K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKIKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/976 (31%), Positives = 503/976 (51%), Gaps = 84/976 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+D    IYRA++A      R  DG   +AI GF  ML++ +    KE    +  V
Sbjct: 2   KPLFLIDAYGLIYRAYFALIRAPMRTKDGRNTSAIYGFFRMLFRFV----KEYDPVYCGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + D    TFR + +  YKA R K PE L PQ+P++    +A G   + + GFEADD++ T
Sbjct: 58  VLDSLTPTFREKTFEAYKATRQKTPEDLHPQIPVIEEILEALGFATVRMNGFEADDVMGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVC 181
              +A+ EG    ++S DKDL QLV+    +    K++   +D E V +KWG+  +++V 
Sbjct: 118 LAAMAQAEGRPCFVVSGDKDLAQLVTKGVKIVRMDKDDFVVLDEEGVKEKWGVRADQIVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ DNIPG+ GIG KTA  LL EYG+LE +  +   +     R  + E  E A 
Sbjct: 178 FLALVGDASDNIPGVEGIGEKTAQRLLAEYGSLEGVYAHLDELSPS-LRRKLEEGRERAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LSR L  +RTD+ +++ +  L   +    R      A +       +A       +  E 
Sbjct: 237 LSRDLATIRTDLDLSLTIGDLRRREPEVQRARELFLAYDIRS----LAQEVGGSPSVGEK 292

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L++      G+                                               
Sbjct: 293 PTLEVEGPSRAGV----------------------------------------------- 305

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                SY  + +   + +WV++    G+ +    TD +D    + + ++ +  + +    
Sbjct: 306 -----SYEVVTDRASLSRWVEEALERGAVAVDTETDGLDPLTCRLVGVSFAVDEGR---- 356

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 ++ L+    +           +   L     +   +K+G N+K+D  VL R+G+
Sbjct: 357 ----ACYVPLAAPDVRPLPADV-----VREVLSPLLVSTEVVKVGQNLKFDYHVLRRWGV 407

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              G F D M+ +++L+S    +++  +A+K+L +         +     + +  ++   
Sbjct: 408 RPEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTIHYKDVVEKGASFETVPVAEAGV 467

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E++++ L+L  +L+ +L  E L  V+  ++ P++ ++++ME  GI +D + L     
Sbjct: 468 YAAEDADIALRLSRVLKERLEAEGLGRVFYEMEMPLLSILARMEEWGIGLDGEALSAFGR 527

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+ + + ++E+ I++L G +FN+ S KQL ++LF +   P   KTKTG + T    LE++
Sbjct: 528 ELEERISTIEKEIFELVGHEFNVGSTKQLQEVLFVERGLPPVKKTKTG-FSTDTSVLEEL 586

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+   +LE+R L+K+K+TY D LP  +N  T R+HT++S   T TGRL+S +PNL
Sbjct: 587 AARD-PVAAKVLEYRSLTKLKNTYVDVLPGLVNPGTGRLHTWFSQVGTATGRLSSKDPNL 645

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPIKT+ G++IR AF+       +SADYSQIEL ILAH+++   L + F    D+HR 
Sbjct: 646 QNIPIKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSEDPALCRAFREGEDVHRA 705

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
             + +FGV  E V+P+ RR AKTINF +IYG+S FRL+ +L IPR EA  +I  YF  + 
Sbjct: 706 TGSLLFGVPPEAVTPEQRRIAKTINFGVIYGMSAFRLSRELGIPRKEAERFIDAYFTTYA 765

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  +IE+T     + GYV T+FGR+     I S   + +   ER A+N PIQGS ADI 
Sbjct: 766 GVRAFIERTIAEAEEKGYVTTLFGRKRPLPYITSRNKTQKTGAERIAVNTPIQGSGADII 825

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI +   +    LA++M+LQ+HDEL+FEVP EE+    +++   ME      + L V
Sbjct: 826 KLAMIDLDAQMRRMGLASRMILQVHDELIFEVPPEELEVMKRLVRERMEGV----VRLSV 881

Query: 961 PLKVNIKVSNNWQEEN 976
           PL+V + V  NW E +
Sbjct: 882 PLRVEMGVGRNWGEAH 897


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/987 (34%), Positives = 516/987 (52%), Gaps = 87/987 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS+++RA++A P L+    GL   A+ G   M+ KLL +   +     
Sbjct: 1   MT-DKRLILVDGSSYLFRAYHALPPLTNSK-GLNTGAVKGVIGMIRKLLADYPDDQ---- 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD    TFRNEIY +YKANRP +P+ L  Q+  +     A G+P + + G EADD+
Sbjct: 55  VVVVFDAKGPTFRNEIYSEYKANRPPMPDELREQIEPIHGIIHAMGLPLLCVPGVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A      V + + DKD+ QLV+    L +T+    ++ + V++K+G+PPE ++
Sbjct: 115 IGTLAARAADADRPVLVSTGDKDMAQLVNDHVTLVNTMTNTVLNRDGVVEKFGVPPELII 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENIL 234
            L AL GD +DNIPG+ G+G KTA  LLQ  G ++ I     ++        K     + 
Sbjct: 175 DLLALMGDKVDNIPGVAGVGEKTALALLQGIGGVDAIYGALDQVADLSVRGAKTLAAKLE 234

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           ++ + A LS +L  + TD         L L + +                          
Sbjct: 235 KHRDEAELSYRLATIETDC-------DLPLSEED-------------------------- 261

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                +    DRD  I   Q         +  S+  P+      
Sbjct: 262 --------------------LVSAAPDRDALIGYYQDMEFKAWLDEQLSDDAPEDHLEAD 301

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
               S +  +      I     + QW   ++  G  +F   T +++   ++ +  +++  
Sbjct: 302 AD--SDHDGDTLEVIVIDEMSVLDQWFDDIKARGFFAFDTETTSLNYMQARLVGFSMAIR 359

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                        ++ L               +++L+ LK   EN   LK+G N+KYD  
Sbjct: 360 PG--------TAAYVPLGHDYP--GAPDQLDFEQVLAKLKPILENADILKLGQNLKYDSN 409

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPI 530
           +L  +GI++RG  ED ML SYVLDS  + HD+ S+A K+L       ++I       +  
Sbjct: 410 ILCNHGITLRGITEDTMLESYVLDSVGTRHDMDSLALKYLGRGTTKFQDIAGKGAKQLTF 469

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++I+  Q   +A E+++V L+L  +L PKL    +L  +Y  L+ P++ V+S++E  G  
Sbjct: 470 NQIALEQAAPYAAEDADVTLRLHEVLSPKLKAVPRLHQLYAELEVPLVAVLSRIERNGAY 529

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           I +  L   S E++  L SLE    +L+G+ FNL SPKQLG+ILF KL  P   KT  G 
Sbjct: 530 ISRQSLADHSHELAGRLESLEARAQELAGQAFNLGSPKQLGEILFDKLGLPVIKKTPKGA 589

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L ++   D P+   ++E+R LSK+KSTY D LP  I+  T RVHT Y  A T 
Sbjct: 590 PSTAEEVLLEL-AEDYPLPSVLMEYRSLSKLKSTYTDRLPEVIDPDTGRVHTSYHQAVTA 648

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+T+ G++IR+AF++P  +++++ADYSQIELRI+AH+++   L +
Sbjct: 649 TGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGRRILAADYSQIELRIMAHLSRDAGLLR 708

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F   LD+H   AAE+FGV +  V+   RR AK INF +IYG+S F LA QL I R EA 
Sbjct: 709 AFSEGLDVHSATAAEVFGVELNDVTVDQRRKAKAINFGLIYGMSAFGLARQLHIGRGEAQ 768

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +YI+RYF R+PG+ +Y+ +T+    + GYVET FGRR+   EIN+     +   ER AIN
Sbjct: 769 EYIERYFSRYPGVADYMARTRAEAHERGYVETHFGRRLQLPEINAKNKQRQLAAERTAIN 828

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI ++AMI+V   L+D  L   +++Q+HDELVFEV E  +   S+ +   M 
Sbjct: 829 APMQGTAADIIKKAMIAVDAWLQDSSLDALLIMQVHDELVFEVAETAVAQLSEALPSLMA 888

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
                   L VPL V   V  NW E +
Sbjct: 889 DVAA----LEVPLLVEAGVGANWDEAH 911


>gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/988 (33%), Positives = 533/988 (53%), Gaps = 58/988 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  LFL+D  + I+R +YA     R    G+ V+AI GF N L+ +++  R +    H
Sbjct: 7   NTQKRLFLLDAYALIFRGYYALIKNPRITSSGMDVSAIMGFTNSLFDVIKRERPD----H 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    + R E + DYKANR + PE +   +P ++   +A  IP IE QG EADD+
Sbjct: 63  LAVAFDKGGSSARVEAFEDYKANRDETPEAIRIAIPHIQEILRAMHIPIIERQGVEADDL 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP- 175
           I T +  AEKEGF V +++ DKD  QLVS    +Y   +     E   I  V K++ +  
Sbjct: 123 IGTLSKQAEKEGFKVYMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQKRFEVER 182

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE+++    + GD+ DNIPG+PG+G KTA   +  YG++E +L N  ++K  K +E ++E
Sbjct: 183 PEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIAAYGSMEGLLANTDKLKG-KMKEKVIE 241

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            AE   LS+KL  +  D  +T   +   L + +   +    + LEF ++ ++    +  +
Sbjct: 242 NAELGLLSKKLATIMLDCDVTFNAKDYELSEPDAEAVGKKFEELEFRRMKDQFIKIFSGE 301

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A     V        +   A +         + S F   S  T+   S+ + +K   +  
Sbjct: 302 ADQGTQVS-------STPTAKKAVASNAGAGQFSLFGGDSGATAAAVSDASTRKTIKDT- 353

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y K+ +    + ++Q L    S  F   T  +D   ++ + IA S   
Sbjct: 354 ---------QHFYQKVDSPLARKLFIQNLNKQSSVCFDTETTGLDPLVAELVGIAFSWEA 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K          +I       +         + ++  L+ FFEN    KIG N+KYD  V
Sbjct: 405 GKG--------YYIPFPESKEE--------AQALIEELRPFFENTAIEKIGQNLKYDIKV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPI 530
           L +Y + ++G   D ML  Y+++     H++  +A+ +L+Y      + I K  K+   +
Sbjct: 449 LAKYNVKVKGKLFDTMLAHYLINPDM-RHNMDVLAETYLNYTPVSITELIGKKGKNQKSM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +S     E+A+E++++ LQL      +L       +++ ++ P++ V++ ME+ GI +
Sbjct: 508 RDVSVDDQTEYAVEDADITLQLKQHFEKELDEAGTRKLFDDIEIPLLRVLAAMEVEGINL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D   L+ +S +++ ++  L   I+  +GE+FN+ SPKQLG+ILF K+K      KTKTGQ
Sbjct: 568 DVSFLQSLSGDLNADIERLTSEIFAEAGEEFNIGSPKQLGEILFDKMKLVDKPKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  TA+D+      D+ II+ +L++R LSK+KSTY D+LP  +  +  RVHT Y      
Sbjct: 628 YS-TAEDVLSYLAKDHDIIQKVLDYRGLSKLKSTYVDALPEQV-AQDGRVHTDYMQTVAA 685

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A +++   + 
Sbjct: 686 TGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMI 745

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F +  DIH   AA++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  + R EA
Sbjct: 746 QAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEA 805

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  Y+  +P +  Y+ +   F R+NGYV+T+  RR + + INS    +R   ER A+
Sbjct: 806 KELIDNYYKSYPKLRNYMSELVEFARENGYVKTVLDRRRYLNGINSSNGVVRGAAERNAV 865

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI++ + LE+    TKMLLQ+HDELVF+VP +E+    ++I   M
Sbjct: 866 NAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVFDVPNDELDAIKELIKTEM 925

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A      + VPL V + +  NW E +
Sbjct: 926 ESA----FKMAVPLDVEVGLGQNWLEAH 949


>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
 gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
          Length = 949

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/990 (34%), Positives = 540/990 (54%), Gaps = 55/990 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  LFL+D  + I+R +YA     R    G+  +AI GF N L  +++  + +    
Sbjct: 1   MSTQKRLFLLDAYALIFRGYYAFIKNPRINSKGMDTSAIMGFMNSLLDVIKREKPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R E++ +YKANR + PE +   +P ++   +A  IP IE+ G EADD
Sbjct: 57  HLAVAFDKEGSRARTEMFAEYKANRDETPEAIKIAVPYIQELLKAMHIPIIELAGCEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           +I T    AEK+ + V +++ DKD  QLVS    +Y   +     E   +  V+ K+ + 
Sbjct: 117 LIGTIAKQAEKQNYKVYMVTPDKDFAQLVSENIFMYKPARMGNGIEIWGVPEVLAKFEVE 176

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++    + GD++DNIPG+PG+G  TA   L+E+G++EN+L N  ++K  K +ENI 
Sbjct: 177 RPEQVIDFLGMMGDAVDNIPGLPGVGEVTAKKFLKEFGSMENLLANTDKLKG-KMKENIE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              +   LS+KL  +  D  +    +   L   +  +  +  + LEF ++  +    +  
Sbjct: 236 ANKDKGILSKKLAAIMCDCDVVFNEDDYELSRPDIEKTDAIFQELEFRRMAEQFDNLFKV 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            A +                A + ++ +    K      L         E         R
Sbjct: 296 GAGS----------ESGSTPAQDAKLYKKPQPKNEDQFDLFGGGGTTLDENAEA----AR 341

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
               +       SY  +     I+  +Q L+   S  F   T  +DA H++ + ++ S  
Sbjct: 342 NSFYNTLENTEHSYQTVQGDLGIKLLLQNLQKQTSVCFDTETTGIDALHAELVGMSFSYE 401

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K          ++                 K ++     FFENE+  KIG N+KYD  
Sbjct: 402 KGK--------AFYVPFPES--------QEEAKVLIDKFVPFFENENIEKIGQNLKYDLK 445

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIP 529
           +L  YG++++G   D M+  Y+++     H++  +A+ +L Y+ K I     K  K+ + 
Sbjct: 446 ILSNYGVTVKGKLFDTMIAHYLINPDM-RHNMDILAETYLKYSPKSIETLIGKKGKNQLS 504

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +    ++E+A E+++V LQL  +   +L   +   +++ ++ P++ V++ ME  GI+
Sbjct: 505 MRDVPLEDIKEYAAEDADVTLQLKEIFTAELEKTETKKLFDEIEIPLVSVLADMETEGIR 564

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKT 647
           +D + LKQ+S E+   + SLEE IY+ +GEKFNL+SPKQLGDILF KLK       KTKT
Sbjct: 565 LDVEFLKQMSKEMDVEIKSLEEQIYETAGEKFNLASPKQLGDILFDKLKIGGAKQKKTKT 624

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+  T +++      DNPI+K IL+WRQ+ K++STY  +LP  ++K+T RVHT Y    
Sbjct: 625 GQY-ATGEEVLTYLANDNPIVKQILDWRQMVKLQSTYILALPEQVDKKTLRVHTDYMQTV 683

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITP 766
             TGRL+S  PNLQNIPI+T+ G++IR+AF++      LISADYSQIELRI+A ++    
Sbjct: 684 AATGRLSSNNPNLQNIPIRTERGRQIRKAFVARDENYTLISADYSQIELRIIAALSGEEN 743

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           +   F+N  DIHR  AA++F V +E+VS + R +AKT+NF IIYG+S F L+ Q  + RS
Sbjct: 744 MIAAFQNGEDIHRATAAKVFDVALEEVSREQRSNAKTVNFGIIYGVSAFGLSNQTSLSRS 803

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           E+A  I  Y+  +P +  YI +  +F R+ GYV+TI GRR +  +INS  + +R+  ER 
Sbjct: 804 ESAALIDAYYKTYPRLKSYISEQVDFAREKGYVQTILGRRRYLKDINSANAVVRSAAERN 863

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+NAPIQGSAAD+ + AMI++HK L +    +KMLLQ+HDELVF+V  +E+     +I H
Sbjct: 864 AVNAPIQGSAADVIKIAMINIHKKLREENWKSKMLLQVHDELVFDVHNDELEKIQPMIKH 923

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME A      + VPL+V + +  +W E +
Sbjct: 924 EMENA----FKMSVPLEVELGLGKDWLEAH 949


>gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 921

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/991 (34%), Positives = 529/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+F
Sbjct: 5   PLVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +      +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     L                   
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAEL------------------- 280

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                          +F S  +   + ++++  Q+L +E     
Sbjct: 281 -------------------------------EFKSWIEDLQR-DAKRAGQELAVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL      +F I ++  DA  ++ + ++ +     +
Sbjct: 305 PTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFAFVIQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q  ++A E +++ L+L  +   +L     L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/983 (33%), Positives = 528/983 (53%), Gaps = 75/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYR++YA     R    GL  +A+ GF N L ++L   R     +H  V
Sbjct: 2   DKLFLLDAYALIYRSYYALLRSPRINSKGLNTSAVLGFMNTLNEVLTKER----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+   TFR+E +P YKA R + PE +   +P+++   +A+ IP +++ GFEADDII T
Sbjct: 58  AFDH-GKTFRHEAFPQYKAQREETPEDIKLSVPIIKRILEAYRIPILQVDGFEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGI-PPEKM 179
                 +EG A  +++ DKD  QLV+    +Y        E +  + V  K+GI  P ++
Sbjct: 117 VATRFGREGVAAYMLTPDKDYGQLVADNVYIYRPRHGGGYEVMGPKEVQAKYGIASPLQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L AL GDS DN PG PG+G KTAA L+ E+G++EN++ N +++K  K RE +    E 
Sbjct: 177 VDLLALMGDSADNFPGCPGVGEKTAAKLIGEFGSVENLIANTAQLKG-KLREKVEGAVED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVP  I L+ L +E  +  +L      LEF     R+    +      
Sbjct: 236 IKMSKFLATIRTDVPTDIRLDDLKVESPDEAKLDQIFTELEFNSFRKRMLNKAEKKQKT- 294

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                         Q    ++  +  +     +    E L+ + 
Sbjct: 295 ---------------------------DNLQLDFFAENPT--DGPSVAENANFETLKTIP 325

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I    + ++      T    S    T + +A  ++ + ++ +  ++K  
Sbjct: 326 H------EYQLIETEDEARRLYDFFRTNKILSLDTETTSTNAIEAELVGLSFAVEERK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +  +  +          +I++  K  +E+   LK+G NIKYD  VL  Y
Sbjct: 378 ------AFYVAIPANREE--------ALKIVAIFKPLYEDPEILKVGQNIKYDIEVLRHY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS-RKSSIPIDKIS 534
           G+ + G   D M+  Y+L      H++  +A+ +L Y     +E++    ++   +  +S
Sbjct: 424 GVEVAGPMFDTMIAHYLLQP-ELRHNMDYMAEVYLGYRTVHIEELIGPRGRNQKNMRDLS 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + + E+A E++++ L+L  +L PKL    +  ++  ++ P++ V++ ME+ G+ +D + 
Sbjct: 483 PTDIYEYACEDADITLRLKNVLEPKLDEAGVARLFHDIEMPLVGVLADMELNGVCLDTEA 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           L + S   +K + ++E++IY+L+GE+FN+SSP+Q+GDILF K+K      KTKTGQ+ T+
Sbjct: 543 LHETSEVFNKRMTTIEQHIYELAGEQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTS 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+Q+    +PII  IL +R L K+ STY D+LP  IN RT R+HT ++   T TGRL
Sbjct: 603 EEVLQQLRS-KSPIIDEILNYRGLKKLLSTYVDALPKLINPRTGRIHTSFNQTVTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++ D G++IR+ FI  P     SADYSQIELRI+AH+++   + + F  
Sbjct: 662 SSSDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMIEAFRE 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA I+  +I +V+P  R+ AK  NF IIYGI+ + LA ++ I   EA D I 
Sbjct: 722 GFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTYGLAQRMDISNGEARDLID 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +  Y+E+ K   R+ GY ET+F RR +  +INS  +++R   ER AINAPIQ
Sbjct: 782 GYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINSHNATVRGFAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GS ADI + AM+ +H+  +   + +KM+LQ+HDEL F V  EE     +I+V  M+ A  
Sbjct: 842 GSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFPEEKEQVERIVVEEMQGA-- 899

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL  +     NW E +
Sbjct: 900 --YKLRVPLVADAGWGKNWLEAH 920


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/987 (33%), Positives = 528/987 (53%), Gaps = 77/987 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           MQK   LFL+D  + IYR++YA     R    GL  +AI GF N L ++L   +     +
Sbjct: 1   MQK---LFLLDAYALIYRSYYAFIKNPRINSKGLNTSAIMGFLNTLNEVLTKEK----PT 53

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +P YKA R + PE +   +P+++   +A+ IP +++ GFEADD
Sbjct: 54  HIGVAFDPHGPTFRSEAFPAYKAQREETPEDIRKAVPIIKDLLKAYRIPILQVDGFEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPP 176
           +I T    A   G    +++ DKD  QLV     +Y        E +  + + +K+ IP 
Sbjct: 114 VIGTLAEKAGSIGVETYMLTPDKDYGQLVRDNVFIYRPRHGGGYETMGPKEICEKYNIPS 173

Query: 177 E-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
              ++ L AL GDS DN PG PG+G KTAA L+ E+G++E +L  +S IK  K RE + +
Sbjct: 174 PMAVIDLLALMGDSADNFPGCPGVGEKTAAKLIDEFGSIEQLLARSSEIKG-KLREKVEQ 232

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + E  ++S  L  ++TDVPI + +E+L L + N   L   L  LE     +RV       
Sbjct: 233 HVEDIKMSYFLATIKTDVPIELDMENLKLVEPNEDELGKLLTELEMKSFADRVLKKSQKP 292

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
              +                           +   F+  +     +N   + + L     
Sbjct: 293 QKVVNQ-------------------------QLDLFAEFATDGQAVNENTSFETL----- 322

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +Y  + N +D+++      T    S    T +  A  ++ + ++ +  +
Sbjct: 323 ------KTTPHNYKLVENQEDLKKLCDYFLTNKILSLDTETTSTSAIDAELVGLSFAVKE 376

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    E  ++ +  +  +          +I++  K  +EN   LK+G N+KYD  V
Sbjct: 377 --------FEAFYVPVPANREE--------ALQIVNIFKPAYENPEILKVGQNLKYDLEV 420

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YGI ++G   D M+  Y++      H++  +A+ +L+Y     +E++    K+   +
Sbjct: 421 LRNYGIELKGKMWDTMIAHYLIQPELH-HNMDYMAEIYLNYQTIHIEELIGPKGKNQKSM 479

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +  SQV E+A E++++ L+L   L P+L   +   ++  ++ P++ V+++ME+ G+ +
Sbjct: 480 RSLPPSQVYEYAAEDADITLRLKNKLEPELKKAECEDLFYNIEMPLMPVLAEMELNGVCL 539

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D   L + S + +  +  +E  IY+L+GE+FN++SPKQ+G+ILF KLK      KTKTGQ
Sbjct: 540 DTASLAETSKQFTNRMNEIEARIYELAGEQFNIASPKQVGEILFDKLKIVEKAKKTKTGQ 599

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + L+Q+    + I+ +ILE R L K+  TY D+LP  IN +T  +HT ++   T 
Sbjct: 600 YVTSEEVLQQLR-NKHEIVADILEHRGLKKLIGTYIDALPKLINPKTGHIHTSFNQTITA 658

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+ + G++IR+AFI  P     SADYSQIELR++AH+++   + +
Sbjct: 659 TGRLSSSDPNLQNIPIRGEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEMIK 718

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           VF    D+H   AA I+   IE+V+   R  +K  NF IIYGI+ F LA +L IPR EA 
Sbjct: 719 VFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIYGITVFGLAERLDIPRDEAK 778

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I  YF  FP +H+Y+EK+K   R+ GYV T+FGRR +  +INS  +++R   ER AIN
Sbjct: 779 MLIDGYFDTFPQVHDYMEKSKEVAREKGYVTTLFGRRRYLPDINSHNATVRGFAERNAIN 838

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQG+AADI + AMI ++   +   + +KM+LQ+HDEL F V  +E      I++  M+
Sbjct: 839 APIQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDELNFSVYPDEKEKVEGIVLQEMQ 898

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A    +NL VPL  +     NW E +
Sbjct: 899 NA----LNLSVPLVADSGFGKNWLEAH 921


>gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
 gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
          Length = 939

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/994 (34%), Positives = 517/994 (52%), Gaps = 73/994 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M     L LVDGSS++YRA++A    +    DG P  A+ G  NML +L    R +    
Sbjct: 1   MSNRPTLLLVDGSSYLYRAYHAMLRQNLTAPDGAPTGALYGVLNMLRRL----RADYPHD 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + AV+FD     FR++++ +YKA RP +P+ L PQ   +    +  G P + I   EADD
Sbjct: 57  YCAVVFDAKGKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLTGWPVLVIGQVEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T        G  V + + DKD+ QLV+ +  L +T+  E +DIE V +K+G+ P+++
Sbjct: 117 VIGTLAKQGVGHGLQVIVSTGDKDMAQLVNESVTLVNTMSGETLDIEGVKEKFGVRPDQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               ALTGD +DN+PG+   G KTA   L+ YG+L+ ++ +A  IK  K  EN+      
Sbjct: 177 RDYLALTGDKVDNVPGVEKCGPKTAEKWLEAYGSLQGVMEHALEIKG-KVGENLRAALPR 235

Query: 240 ARLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             LS  LV ++TDV +    +  LE L        +L    K   F   +          
Sbjct: 236 LPLSYDLVTIKTDVDLHAELSDGLESLRRTTPKWAQLAVDFKRWGFRTWLK--------- 286

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                E E             S +       + + P +   E+ 
Sbjct: 287 ---------------------EAESRMHEAADGGLSGSDAIGGKAAPAAEMPSERLPEKA 325

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +         + KL           T ++DA ++  + I+I+   
Sbjct: 326 -----VAPEKLDYQAVTTEAQFAALLDKLSQAEKIGIDTETTSLDAMNASLVGISIAFQA 380

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +         ++I +    +  +  +    + +L  LK   EN    KIG N+KYD+ V
Sbjct: 381 GE--------AVYIPVGHSLT--AAPEQLDLQYVLDRLKPHLENSALKKIGQNLKYDQHV 430

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPID 531
              YGI++ G   D ML SY+++S    H +  ++ +WL     T + +       I   
Sbjct: 431 FANYGIALNGIVGDAMLASYIIESHLG-HGLDELSGRWLGLETITYESLCGKGAKQIGFA 489

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            ++     E+A ++++  L+L   LR ++  +K L +YE+++ P+  V+ +ME  G+QID
Sbjct: 490 DVAIGPATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVLFEMERVGVQID 548

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQ 649
           +  L + SAE+   L+ LE+  Y  +G+ FNL+SPKQL +ILF K+  P+    KT  G 
Sbjct: 549 RAELARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGG 608

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T    LEQ+   D P+ K IL+ R L+K+KSTY D LP  I+ R +RVHT Y+ A  +
Sbjct: 609 ISTNEDVLEQL-APDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAI 667

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLA   PNLQNIPI+T+ G+K+RRAF +PP   ++SADYSQIELRI+AH++    L  
Sbjct: 668 TGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 727

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+N  D+HR  AAE+FG+  E VS + RR+AKTINF +IYG+  + LA  L I    A 
Sbjct: 728 AFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAK 787

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I RYF R+PG+ EY+++ +      GYVET+FGRR++  +I    ++IR   ERAAIN
Sbjct: 788 NFIDRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNANIRARAERAAIN 847

Query: 890 APIQGSAADITRRAMISVHKSLEDHK-------LATKMLLQIHDELVFEVPEEEITTASQ 942
           AP+QG+A+D+ +RAMI V + L + +       L +K+++Q+HDELV EVPE E+    +
Sbjct: 848 APMQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQVHDELVLEVPEAELDLVKE 907

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +   M  A +    L VPL   +    NW+E +
Sbjct: 908 KLPQMM--AAVDDGMLDVPLAAEVGAGMNWEEAH 939


>gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/977 (35%), Positives = 537/977 (54%), Gaps = 56/977 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS +++RAF+A P L+    G   NAI G  + L KL++  +     +H AVI
Sbjct: 2   PPFILVDGSYYLFRAFHALPPLTTSQ-GQTTNAIKGALSALQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+ + P+YKA+RP +P  L  Q+P +    +  GIP + + G EADD+I T 
Sbjct: 57  FDTPEPTFRHMLSPEYKAHRPAMPSELSTQIPYLHAIIKGLGIPLLLLPGAEADDLIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A +EG  V I + DKD+ QLV+    L D+ +++ +D + VI K+G+ P++++    
Sbjct: 117 ACRAVREGHHVLISTGDKDMAQLVNDHIKLEDSFRDQVLDHDGVIAKFGVRPDQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G  TAA LL +Y  +  IL NA  IK  K  E+I E A+   L+ 
Sbjct: 177 LMGDASDGIAGVPGVGKVTAAKLLNQYQTIGGILENAHLIKG-KVGESIRENADKIPLNH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L   + P L      LEF  L+  +    + D    EP   
Sbjct: 236 QLASIVCDLPLELDWHELKLGRPDVPALKKLYAELEFRALLQSLEHPNNPDNQPQEP--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  K  + E +  +D   K  +  S+++Q   +                    PI+
Sbjct: 293 ------QKSYSFE-DTKKDDIPKLLETLSITEQPVAL--------------------PIS 325

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  +++  +    V++L+     +    T ++D   ++ + ++ +     +     +
Sbjct: 326 EAKYHTVLDKTEFLALVERLKAAPRFAVDTETTSLDYRLARIVGVSFALQAG-EAFYIPI 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++            +    + +L  LK   EN    KIG ++KYD  V + +GIS+ 
Sbjct: 385 GHDYMGAP---------EQLDAQFVLDILKPILENPAIGKIGQHMKYDAHVFNNHGISLA 435

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+  D ML SYVL+   + H +  +AQ +L+YT    ++I       +  ++I   +   
Sbjct: 436 GWAFDTMLASYVLNPTATRHGMDDLAQYYLNYTTTTFEQIAGKGAKQLTFNQIELEKAAP 495

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+     +L    +L  +    + P   V+ +ME  GI++D   L ++ 
Sbjct: 496 YAAEDADITWRLYEHFSKELAKIPRLERLLLDAEMPAAQVLYEMENNGIRLDIPFLAELG 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
                 +L+LE +  +L+G+ FN+SSPKQLG+ILF KL    G KT +GQ+ T    LE+
Sbjct: 556 QRFGAQILTLESHAIELAGQPFNVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   D+PII  ILE+R LSK+KSTY DSL    +  TQRVHT Y  A   TGRL+S +PN
Sbjct: 616 I---DHPIIATILEYRSLSKLKSTYTDSLIAQSDPATQRVHTSYHQAIAATGRLSSTDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+ ++G++IR+AFI+P  + +++ADYSQIELR++AH ++   L + F +  DIH+
Sbjct: 673 LQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIHQ 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ +E V+   RR AK INF ++YG+S F LA QL + R+EA +YI  YF R+
Sbjct: 733 ATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAFGLAKQLNLSRAEAQEYITLYFSRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +H+Y+E T+    + GYVET+ GRR++ + I +  + +R   ERAAINAP+QGSAADI
Sbjct: 793 PSVHDYMENTRALAAEQGYVETVLGRRLYMENIRAGNAMVRQAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMISV +SL       KMLLQ+HDELVFEV E++    + ++   M      + ++ 
Sbjct: 853 IKLAMISVDQSLPKEH--AKMLLQVHDELVFEVDEDKADEVTALLKKLMPAVLQGRADIA 910

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL++ +    NW   +
Sbjct: 911 VPLEIEVGRGVNWGVAH 927


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/989 (34%), Positives = 544/989 (55%), Gaps = 65/989 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + +FL+D  + IYR++YA     R    G+  +AI GF N+L +L++N + E    + A+
Sbjct: 9   DKVFLLDAYAIIYRSYYAFLKNPRINSKGVNTSAIFGFVNILDELIRNEKPE----YIAI 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E Y +YKA R K PE +   +P ++   +A+GI   E++G+EADD+I T
Sbjct: 65  VFDPGGKTFRHETYEEYKAQRQKTPEDIKNAIPYIKRIIEAYGIGIFEMEGYEADDVIGT 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
                + EGF V +++ DKD  QLV      Y         + + +E +  K+G+  P +
Sbjct: 125 MAKRLQGEGFGVYMMTPDKDYAQLVDTNIFQYKPRYGSAGFDVLGVEEIKAKYGLDSPAQ 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+ L  L GD+ DNIPG PG+G KTA  L++++G+++N+L N  ++     +  +++  E
Sbjct: 185 MIDLLGLMGDASDNIPGCPGVGEKTATKLIKDFGSIDNLLHNTDKLTGA-LKTKVVQNRE 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LSR L  ++TD+PI + +E +  +  +  ++      LEF  L++R           
Sbjct: 244 QIVLSRFLATIKTDIPIDLSIEEIKRKPSDTGKMRELFTELEFRTLLHRHQLG------- 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            + +V    T+  +G   +T+    T+              +  + ++PQ    + +  L
Sbjct: 297 -DIIVKQETTSHTQGSLFDTQAKEQTSA------------IQKATNESPQ-DTTDIIPTL 342

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I    +I + ++ L +  +  F   T ++D F ++ + ++ +   QK 
Sbjct: 343 KTINDTRHEYILIQTDDEIDRLIEILGSHSAFCFDTETTSLDTFEAQIVGLSFAVEPQK- 401

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L              T+EIL       E+    K G N+KYD  VL  
Sbjct: 402 -------AYYVALP--------DDKQKTEEILRRFAPLLEDASIEKTGQNMKYDISVLGN 446

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK------EILKSRKSSIPID 531
           YGI + G   D M+  Y+L      H++  +A+ +L Y         +  K++KS  PI+
Sbjct: 447 YGIGVGGRMFDTMIAHYLLQP-ELRHNMDYMAEVFLGYRTIHFGELFDDDKTKKSGKPIE 505

Query: 532 KI---SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            I      +++++A E++++ LQL  +   KL    L +++  ++ P++ ++++ME  G+
Sbjct: 506 DIRKVELGKLKDYACEDADITLQLKNIFGQKLCESSLKNLFFDIEMPLVPILAKMESNGV 565

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
            ID   L   +  + + L  +E +I        N+SSPKQ+G++LF +L+      KTKT
Sbjct: 566 LIDDFALASYAETLKRELQKIERDILAYVDLPINISSPKQIGELLFERLRIVEKPTKTKT 625

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ++T  + L+++    +PIIK ILE R L K+ STY ++LP  IN +T ++HT ++   
Sbjct: 626 GQYRTDEETLQKLR-NRHPIIKLILEHRGLKKLLSTYVEALPKLINPKTNKIHTSFNQTV 684

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S  PNLQNIP++ D G++IR+AFI+ P   L+SADYSQ+ELRI+AH++    +
Sbjct: 685 VSTGRLSSSNPNLQNIPVRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRNM 744

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F +  DIH   AA IF V IE+V+  MRR AKT NF IIYGIS F L+ +L IPR E
Sbjct: 745 LSAFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYGISAFGLSERLDIPRKE 804

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA  I  YF  FP +  Y+E+     R+NG V+T+FGR+++  +INS  + +R   ER A
Sbjct: 805 AAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGRKLYLPDINSQNAGVRGFAERIA 864

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AADI + AMI V +++  H   ++M+LQ+HDELVF VP EE+    Q + H+
Sbjct: 865 INAPIQGTAADIIKIAMIKVDEAIRHHNYRSQMMLQVHDELVFNVPTEEVDEFRQSVKHA 924

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A     +LRVPL V+I + +NW E +
Sbjct: 925 METAA----SLRVPLIVDIGIGHNWLEAH 949


>gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020]
          Length = 921

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/991 (34%), Positives = 527/991 (53%), Gaps = 94/991 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+F
Sbjct: 5   PLVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G  ++ +      +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKKLYERLETVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     L                   
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAEL------------------- 280

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                          +F S  +   + ++++  Q+L +E     
Sbjct: 281 -------------------------------EFKSWIEDLQR-DAKRAGQELAVEE---- 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL      +F   ++  DA  ++ + ++ +     +
Sbjct: 305 PTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++ +E 
Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLHDIEMPLVPVLAGIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            ++  Y+ RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER
Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKTQSLRKGAER 834

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAP+QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I 
Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L VPL V + V NNW E +
Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDEAH 921


>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 896

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/974 (35%), Positives = 526/974 (54%), Gaps = 83/974 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVDGSS++YRAF+A P L+    G    A+ G  NML +LL    K+   S    +FD 
Sbjct: 1   MLVDGSSYVYRAFHALPPLTNSK-GQATGAVKGVINMLRRLL----KDYPESPVVGVFDA 55

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              TFR+++YP+YKANRP +P+ L  Q+  +    +A G+P + ++G EADD+I T    
Sbjct: 56  KGKTFRDDLYPEYKANRPSMPDELREQIVPIHSIVRAMGLPFLCVEGVEADDVIGTLARQ 115

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           A ++G +V I + DKD+ QLV   T L +T+ +  +D   V +K+GIPP  ++   AL G
Sbjct: 116 ASEQGRSVVISTGDKDMAQLVDKHTTLVNTMTDTVMDEAGVEQKFGIPPSLIIDFLALMG 175

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D +DNIPG+ G+G KTA  LLQ  G+L++I  +  ++               A LS +  
Sbjct: 176 DKVDNIPGVAGVGEKTALGLLQGIGSLDDIYASLDKV---------------AELSFRGA 220

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
                                 P+L +            +       + A I+  V    
Sbjct: 221 KTM------------------APKLEA-----------EKANAYMSYELATIKTDVELDQ 251

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
             E    A              +F +  +    +   + P    LE             S
Sbjct: 252 RPEALANAEPDREALVEWYTQMEFRAWLEDL--LEEGEAPVVEQLET------------S 297

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  I   +++ +W+Q+LE     +F   T +++   +K + ++ +    K          
Sbjct: 298 YEIITEQQELDRWLQQLEAAELFAFDTETTSLNYMEAKVVGVSFAIEAGK--------AA 349

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
           ++ L+         +      +L+ +K   E+ +  K+G N+KYD  VL  +GI+++G +
Sbjct: 350 YVPLAHDYL--GAPEQLDRDAVLAQMKPLLEDPNQAKVGQNLKYDASVLANHGIALKGID 407

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            D ML SYVLDS  + HD+ S+A K+L       ++I       +  +++   +   +A 
Sbjct: 408 YDTMLESYVLDSTATRHDMDSLALKYLGQNTIHFEDIAGKGAKQLTFNQVKVEEAGPYAA 467

Query: 544 ENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           E++++ L+L   L PKL     LL V+  ++ P++ V+S++E  G  +  ++L Q S E+
Sbjct: 468 EDADITLRLHQALWPKLEELSSLLPVFRDIELPLVPVLSKIERQGALLSCEMLHQQSTEL 527

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              L  L+   Y+L+G++FNL SPKQLG+ILF KL+ P   KT  G    TA+++     
Sbjct: 528 GLRLEELKSAAYELAGQEFNLGSPKQLGEILFEKLELPIIKKTPKGAPS-TAEEVLVELA 586

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+ K +LE+R LSK+KSTY D LP  +N +T RVHT Y  A   TGRL+S +PNLQN
Sbjct: 587 LDYPLPKLLLEYRSLSKLKSTYTDKLPGMVNPQTGRVHTSYHQAVAATGRLSSSDPNLQN 646

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IPI+T+ G++IR+AFI+P   ++++ADYSQIELRI+AH++    L   F+   D+HR  A
Sbjct: 647 IPIRTEEGRRIRQAFIAPQGFRIVAADYSQIELRIMAHLSDDPSLLTAFKEGQDVHRATA 706

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AE+F V++++VS   RR AK INF +IYG+S F LA QL + R EA +YI RYF R+PG+
Sbjct: 707 AEVFEVSLDEVSGDQRRKAKAINFGLIYGMSAFGLAKQLHLGRHEAQEYIDRYFERYPGV 766

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+++T+   ++ G+VET+FGRR++  EIN+         ER AINAP+QGSAADI +R
Sbjct: 767 AQYMDRTRAIAKEQGFVETLFGRRLYLPEINARNKMRVQAAERTAINAPMQGSAADIIKR 826

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+SV + LE      +M++Q+HDELV EV  +E+   S  +   M  A      L VPL
Sbjct: 827 AMLSVDQWLEQGDANARMIMQVHDELVLEVANDEVDAVSNQVCRLMSGAA----ELAVPL 882

Query: 963 KVNIKVSNNWQEEN 976
            V   V +NW E +
Sbjct: 883 LVEAGVGDNWDEAH 896


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score =  898 bits (2321), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/990 (34%), Positives = 522/990 (52%), Gaps = 87/990 (8%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K  EN L LVDGSS++YRA+Y+ P L+    G    A+ G  NML  LL    K+   
Sbjct: 1   MPKIAENPLVLVDGSSYLYRAYYSPPHLTNSK-GEATGAVYGVINMLRSLL----KQYEP 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +  AV+FD    TFRN++Y DYKA RP +P+ L  Q+  +    +A G+P + I G EAD
Sbjct: 56  TQMAVVFDAKGKTFRNDMYEDYKAQRPPMPDDLRTQIEPLHRIIRAMGLPLVCISGVEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T +  A K G AV I + DKD+ QLV     L +T+    +    V +K+G+ PE 
Sbjct: 116 DVIGTISTQASKSGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPAEVTEKFGVGPEL 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232
           ++ L AL GD  DNIPG+PG+G KTA  +L   G ++ IL    ++ +      K     
Sbjct: 176 IIDLLALQGDKSDNIPGLPGVGEKTAVAMLTGAGGIDKILAAPEKMPELGFRGSKTMPAK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + E++E  +LS  L  ++ DV +    + L ++                           
Sbjct: 236 LAEHSEILKLSYALATIKLDVELEQDWQDLTIKP-------------------------- 269

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
               A+ + ++      E K    +   ++  + K+ +           + E   Q +  
Sbjct: 270 ----ADRDELIECFGEMEFKRWLADVLDNKTDSGKSEK---------NTDEEVIKQDIQT 316

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E              YT I   +++  W+ KL      +    T +++   +K + I+ +
Sbjct: 317 E--------------YTTIYTHEELDLWIDKLANADLIAIDTETTSLNYMDAKLVGISFA 362

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               K          ++ L  H   D+  +     E L+ LK   EN    K+G N+KYD
Sbjct: 363 IEAGK--------AAYLPLG-HDYLDAP-EQLDQAEALAKLKPLLENPELKKVGQNLKYD 412

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528
             +    GI ++G   D ML SYV +S  + H++  +A K+L +     +EI       +
Sbjct: 413 ISIFANVGIKLQGIAFDTMLESYVFNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQL 472

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587
             ++I       +A E++++ L+L   L P+L  E +L  V+  ++ P+I V+S +E  G
Sbjct: 473 TFNQIDLETAAPYAAEDADITLRLHQHLWPRLEKEPELASVFTDIELPLIQVLSDIERGG 532

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  +L Q S E+++ +  LE+  ++++GEKFNLSSPKQL  + F KL +P   KT  
Sbjct: 533 VLIDSMMLGQQSGELARTIDELEQKAFEIAGEKFNLSSPKQLQVLFFEKLGYPIIKKTPK 592

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G    TA+++      D P+ K IL+ R L+K+KSTY D LP  +N ++ RVHT Y  A+
Sbjct: 593 GAPS-TAEEVLVELALDYPLPKIILQHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQAN 651

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S EPNLQNIPI+T+ G++IR AFI+   KK+++ADYSQIELRI+AH+++   L
Sbjct: 652 AATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGKKVLAADYSQIELRIMAHLSQDEGL 711

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIHR  AAE+F V+  +V+ + RR AK +NF +IYG+S F LA QL IPR E
Sbjct: 712 LTAFAAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRPE 771

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF R+PG+ +Y+E+T+      GYV T++GRR++   I    +  R   ERAA
Sbjct: 772 AQKYIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAA 831

Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           INAP+QG+AADI ++AMI++   +  +      M++Q+HDELVFEV  +        +  
Sbjct: 832 INAPMQGTAADIIKKAMINIAHWIATETHGEIDMIMQVHDELVFEVDSDRAEEMQAKVCQ 891

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M  A    ++L V L     + +NW++ +
Sbjct: 892 LMADA----VSLDVELLAEAGIGDNWEQAH 917


>gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17]
 gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17]
          Length = 921

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/982 (38%), Positives = 558/982 (56%), Gaps = 72/982 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            HL+LVDGS +I+RA++  P L+ KH G PV A+ G+  MLWKL+         +H AV+
Sbjct: 2   PHLYLVDGSGYIFRAYHRLPPLTNKH-GEPVGAVYGYTTMLWKLVDEINAADGPTHMAVV 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D  + TFRNE+Y  YKA+RP  P  L+PQ P++R AT+AF +P IE +G EADD+IA Y
Sbjct: 61  LDKSSKTFRNEMYDQYKAHRPPPPPDLVPQFPMIRDATRAFSLPCIEEEGLEADDLIACY 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-DTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              A  EG+ VTI+S DKDLMQLV   +    DT+   ++   +V +K+G+ P+++  + 
Sbjct: 121 ARAAMAEGWQVTIVSGDKDLMQLVEDGSLDMLDTMNNRRLGEAYVQEKFGVGPKQLGDVL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS+DN+PG+PG+G KTA+ L+ E+G+LE++L  A  +K+ K R+N++E+A+ ARLS
Sbjct: 181 ALMGDSVDNVPGVPGVGPKTASKLIVEHGDLESVLAAAPEMKKGKLRDNLIEHADNARLS 240

Query: 244 RKLVMLRTDVPITIPLEHLILED--CNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           ++LV L  + P+  PLE L L     + P L +FL+   F  LI ++    +        
Sbjct: 241 KRLVTLECNAPLPQPLEELALHASIPDAP-LRAFLEHHGFRSLIAKMGQITE-------- 291

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                             D  + +  +  P              
Sbjct: 292 ----------------------------------DAPAPVAGDTAPA------APMDDDE 311

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P N D YT + + + + +WV      G  +    T + DA  ++ + +++     K    
Sbjct: 312 PCNLDGYTTVQDLETLDRWVADARHQGFIAIDTETSSTDATQAELVGVSLCLSPNK---- 367

Query: 422 FKVETIFIDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                 +I L    +             E L  +K   E+   LKIG N+K+D +VL   
Sbjct: 368 ----ACYIPLGHGGTDLLSEVPVQIPVAEALERIKALCEDPSVLKIGQNLKFDMIVLGER 423

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           GIS+   +D ++MS+ LD+G   H +  +A   LS+T    KE++ + K  +   ++   
Sbjct: 424 GISIAPHDDTIVMSFDLDAGLHGHGMDELAATHLSHTCLAFKEVVGTGKKQLGFHEVDLK 483

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +A E+++V L+LW   + +L +E+   VYE +D+P++ V++ ME  GI++D++ L 
Sbjct: 484 TATRYAAEDADVTLRLWKRFKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERLS 543

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q+S E +  +  LE  I+ L+G  F + SPKQLG+ILF +L    G K K+G + T   +
Sbjct: 544 QLSTEFAGQIAGLEGEIHTLAGTPFTIGSPKQLGEILFDRLGLKGGRKGKSGVYSTDVTE 603

Query: 657 LEQIN-CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           LE++   G   I++ ILEWRQLSK+KSTY D+L   IN +T RVHT YSL    TGRL+S
Sbjct: 604 LERLARDGGEEIVRKILEWRQLSKLKSTYTDALQAQINPKTGRVHTSYSLTGAQTGRLSS 663

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIPI+T++G+++R AFI+     LI+ADYSQIELR+ AH+A +  L   F N  
Sbjct: 664 TEPNLQNIPIRTEVGRQLREAFIAEDGHVLIAADYSQIELRLAAHMADVPALRDAFANGD 723

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + A E+FG    +V+   R  AKTINF+I+YGIS + LA +L +   EA   I RY
Sbjct: 724 DIHSLTAKELFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLDVSADEAQAMIDRY 779

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPGI+ YI +T + VR+ G+ ET+FGR+ H+  I S     R   ERAAINAPIQG+
Sbjct: 780 FERFPGINRYIAETLSSVREKGFTETLFGRKTHFPRIASRNQGERQGAERAAINAPIQGT 839

Query: 896 AADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +ADI +RAM+ +  +L    L   +MLLQ+HDELVFE PE +   A  +I   M  A  P
Sbjct: 840 SADIIKRAMVRMEPALAAAGLGHVRMLLQVHDELVFEAPEADAEAAGAVIREVMAGAAEP 899

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            + L VPL V I V  NW   +
Sbjct: 900 AVKLSVPLGVEIGVGKNWGAAH 921


>gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/977 (35%), Positives = 540/977 (55%), Gaps = 56/977 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS +++RAF+A P L+    G   NAI G  + L KL++  +     +H AVI
Sbjct: 2   PPFILVDGSYYLFRAFHALPPLTTSQ-GQTTNAIKGALSALQKLMRRMQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+ + P+YKA+RP +P  L  Q+P +    +  GIP + + G EADD+I T 
Sbjct: 57  FDTPEPTFRHMLSPEYKAHRPAMPSELSTQIPYLHAIIKGLGIPLLLLPGAEADDLIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A +EG  V I + DKD+ QLV+    L D+ +++ +D + VI K+G+ P++++    
Sbjct: 117 ACRAVREGHHVLISTGDKDMAQLVNDHIKLEDSFRDQVLDHDGVIAKFGVRPDQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G  TAA LL +Y  +  IL NA  IK  K  E+I E A+   L+ 
Sbjct: 177 LMGDASDGIAGVPGVGKVTAAKLLNQYQTIGGILENAHLIKG-KVGESIRENADKIPLNH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+P+ +    L L   + P L      LEF  L+  +    + D    EP   
Sbjct: 236 QLASIVCDLPLELDWHELKLGKPDVPALKKLYAELEFRALLQSLEHPNNPDNQQQEP--- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                  K  + E +  +D   +  + S++++Q   +                    PI+
Sbjct: 293 ------QKSYSFE-DTKKDDIPELLETSAVAEQPVAL--------------------PIS 325

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I++  +    V++L+     +    T ++D   ++ + ++ + L   +     +
Sbjct: 326 EVQYHTILDKAEFLALVERLKAAPRFAVDTETTSVDYRLARIVGVSFA-LQASEAFYIPI 384

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++            +    K +L  LK   EN    KIG ++KYD  V + +GIS+ 
Sbjct: 385 GHDYMGAP---------EQLDAKFVLDTLKPILENPAIGKIGQHMKYDAHVFNNHGISLA 435

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G+  D ML SYVL+   + H +  +AQ +L YT    ++I       +  ++I   +   
Sbjct: 436 GWAFDTMLASYVLNPTATRHGMDDLAQYYLDYTTTTFEQIAGKGAKQLTFNQIELEKAAP 495

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+      L    KL  +   ++ P   V+ +ME  GI++D   L ++ 
Sbjct: 496 YAAEDADITWRLYEYFAQALAKIPKLEKLLLEIEMPAAQVLYEMENNGIRLDIPFLAELG 555

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
                 +L+LE +  +L+G+ FN+SSPKQLG+ILF KL    G KT +GQ+ T    LE+
Sbjct: 556 QRFGAQILTLESHAIELAGQPFNVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEK 615

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I   D+PII  ILE+R LSK+KSTY DSL    +  TQRVHT Y  A T TGRL+S +PN
Sbjct: 616 I---DHPIIATILEYRSLSKLKSTYTDSLIAQSDSETQRVHTSYHQAITATGRLSSTDPN 672

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+ ++G++IR+AFI+P  + +++ADYSQIELR++AH ++   L + F +  DIH+
Sbjct: 673 LQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIHQ 732

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ +E V+   RR AK INF ++YG+S F LA QL++ R+EA +YI  YF R+
Sbjct: 733 ATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAFGLAKQLKLSRAEAQEYITLYFSRY 792

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +H+Y+E T+    + GYVET+ GRR++ + I +  + +R   ERAAINAP+QGSAADI
Sbjct: 793 PSVHDYMENTRALAAEQGYVETVLGRRLYMENIRAGNAMVRQAAERAAINAPLQGSAADI 852

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMISV ++L       KMLLQ+HDELVFEV E++    + ++   M      + ++ 
Sbjct: 853 IKLAMISVDQALPKEH--AKMLLQVHDELVFEVDEDKADEVTALLKKLMPAVLQGRADIA 910

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL++ +    NW   +
Sbjct: 911 VPLEIEVGRGVNWGVAH 927


>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
 gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
          Length = 902

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/979 (35%), Positives = 544/979 (55%), Gaps = 93/979 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L L+DGSS+++RA+YA P L+ +  G P  A+ G  NML KL+   + +    + A
Sbjct: 12  SSKPLILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+++Y  YKANR ++P  L  Q+  +    +A G P I  +G+EADD+IA
Sbjct: 67  VVFDPKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A+++G  V + + DKDL Q+V+    L +T+ +  ++ + V++K+G+PPEK++  
Sbjct: 127 TLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDY 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             LTGD+ DNIPG+P +G KTA   L +Y ++EN++ +A  IK  K  EN+    +    
Sbjct: 187 LTLTGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKG-KVGENLRACID---- 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                    D+P                             L+ R+ T           V
Sbjct: 242 ---------DLP-----------------------------LMRRLVT-----------V 252

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + D+   EN    I+TE +R+  I+           +++ + Q                 
Sbjct: 253 ISDLPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQ--------------DKK 298

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +    Y  I + K  ++W++KL      +F   T   +A  +K + ++ +    +     
Sbjct: 299 VAAFQYATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHE----- 353

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                ++ L    +          +E+L  LK   E+ +   I  N+KYD  VL + G++
Sbjct: 354 ---AAYVPLGHDYT--GAPAQLDKEEVLRKLKPLLEDPNKTIICQNLKYDAEVLAKEGLT 408

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQV 538
           +R    D +L SYVL+S  + HD+ ++A K+L       +++       I  + ++  + 
Sbjct: 409 IRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKA 468

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL   L P +  EK L  V+E+++ P++ ++ QME+ G+ +D  +L+ 
Sbjct: 469 TAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQA 528

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+S  +  LE+  Y L+G +FNLSSPKQL  IL+ +LK P   KT  GQ   TA+++
Sbjct: 529 QSIELSGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQPS-TAENV 587

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            Q    D P+ K ILE R L+K+K+TY D LP  ++  ++R+HT Y+   T TGRL+S  
Sbjct: 588 LQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNN 647

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G+KIRRAFI+PP  ++++ADYSQ+ELRI+AHI+K   L + F+   DI
Sbjct: 648 PNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKAFDKEWDI 707

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L  QL I R  A +YI  YF 
Sbjct: 708 HRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQEYIDIYFK 767

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P +HEY++K +      GYVET+FGRR++  +I++     R   ERAAINAP+QG+AA
Sbjct: 768 RYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINAPMQGTAA 827

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V   L+ + +   +++Q+HDELVFEV E+++      I  +ME+A    + 
Sbjct: 828 DIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEA----VA 883

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V++ V  NW E +
Sbjct: 884 LSVPLVVDVGVGGNWDEAH 902


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/988 (34%), Positives = 540/988 (54%), Gaps = 53/988 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +  LFL+D  + I+R +YA     R    G+  +AI GF N L  +++  + +    H 
Sbjct: 2   SQKRLFLLDAYALIFRGYYAFIKNPRINSKGMDTSAIMGFMNSLMDVIKREKPD----HL 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD     +R E+Y +YKA+R + PE +   +P ++   +A  IP IE  GFEADD+I
Sbjct: 58  AVAFDKGGSDYRFEMYQEYKAHRVETPEAIKIAVPYIQELLRAMHIPIIEKAGFEADDLI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-P 176
            T    AEKEGF V +++ DKD  QLVS    +Y   +     E   +  V+ K+ I  P
Sbjct: 118 GTLAKQAEKEGFKVFMVTPDKDFAQLVSENIFMYKPARMGNDIEIWGVPEVLAKFEIERP 177

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++    + GDS DNIPG+PG+G KTA   L EYG LEN+L N  ++K    ++ I   
Sbjct: 178 DQVIDFLGMMGDSADNIPGLPGVGEKTAKKFLAEYGTLENLLANTHQLKGA-MKDKIEAN 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E   LS+KL  +  D P+T   +   L   +  +  +  + LEF ++  +    +    
Sbjct: 237 KELGILSKKLATILLDCPVTFDADDYELSKPDVEKTDALFQELEFRQMKAQFDKLFGS-G 295

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              + +  + NT+E      +    +    +   F   SD+    + E T    +   L+
Sbjct: 296 KEYDEIDANGNTSEIPQPIKKAPAKKSNEDQFDLFG-FSDE----SDEPTANHSYYATLE 350

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             + +      Y  I     ++  +Q L    S  F   T  +DA +++ + ++ S    
Sbjct: 351 NTTHF------YQIIQGDLPVKLLMQNLLNQTSVCFDTETTGIDALNAELVGMSFSFEKG 404

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K          ++                 + ++   + FFENE+  KIG N+KYD  +L
Sbjct: 405 KG--------FYVPFPE--------DQEEAQTLIEKFRPFFENENIEKIGQNMKYDLKIL 448

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPID 531
             Y + ++G   D M+  Y+++     H++  +++ +L Y  K I     K  K+ + + 
Sbjct: 449 SNYNMQVKGKLFDTMIAHYLINPDM-RHNMDVLSETYLKYAPKSIETLIGKKGKNQLSMR 507

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +    ++E+A E++++  QL    +P L       +++ ++ P++ V++ ME  GI++D
Sbjct: 508 DVPLEDIKEYATEDADITFQLKEHFQPILEKVGTKKLFDEIEIPLVPVLADMEKEGIRLD 567

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQ 649
            + LK +S ++ K + + E+ IY+ +GEKFNL+SPKQLGDILF KLK       KTKTGQ
Sbjct: 568 VEFLKNMSVDMQKEIDAFEQQIYETAGEKFNLASPKQLGDILFDKLKIGGAKQKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  T +++      ++ I+++ILEWRQ+ K++STY D+LPN ++K+T RVHT Y      
Sbjct: 628 Y-ATGEEVLSYLANEHQIVRDILEWRQMVKLQSTYIDALPNQVDKKTGRVHTDYMQTVAA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+ IR+AFI+      L+SADYSQIELRI+A +     + 
Sbjct: 687 TGRLSSTNPNLQNIPIRTEKGRLIRKAFIARDENYTLLSADYSQIELRIIAALCGEENMI 746

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+N  DIH+  AA++F + +++V+ + R HAKT+NF IIYG+S F L+ Q  + R E+
Sbjct: 747 KAFQNHEDIHKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVSAFGLSNQTNLSRKES 806

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           A+ I+ Y+  +P +  ++    +F R+NGYVETI GRR +  +INS  + +R   ER A+
Sbjct: 807 AELIEAYYQTYPKLKSFMTSQVDFARENGYVETISGRRRYLKDINSANAIVRGGAERNAV 866

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI++HK L      +KMLLQ+HDELVF+V   E+     +I H M
Sbjct: 867 NAPIQGSAADIIKIAMINIHKKLTSENWKSKMLLQVHDELVFDVHNSELEKIQPMIKHEM 926

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A      + VPL V I +  NW E +
Sbjct: 927 ENA----FKMAVPLDVEIGLGKNWLEAH 950


>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
 gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
          Length = 902

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/979 (35%), Positives = 544/979 (55%), Gaps = 93/979 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L L+DGSS+++RA+YA P L+ +  G P  A+ G  NML KL+   + +    + A
Sbjct: 12  SSKPLILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+++Y  YKANR ++P  L  Q+  +    +A G P I  +G+EADD+IA
Sbjct: 67  VVFDPKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A+++G  V + + DKDL Q+V+    L +T+ +  ++ + V++K+G+PPEK++  
Sbjct: 127 TLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDY 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             LTGD+ DNIPG+P +G KTA   L +Y ++EN++ +A+ IK  K  EN+    +    
Sbjct: 187 LTLTGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHANEIKG-KVGENLRACID---- 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                    D+P                             L+ R+ T           V
Sbjct: 242 ---------DLP-----------------------------LMRRLVT-----------V 252

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + D+   EN    I+TE +R+  I+           +++ + Q                 
Sbjct: 253 ISDLPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQ--------------DKK 298

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +    Y  I + K  ++W++KL      +F   T   +A  +K + ++ +    +     
Sbjct: 299 VAAFQYATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHE----- 353

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                ++ L    +          +E+L  LK   E+ +   I  N+KYD  VL + G++
Sbjct: 354 ---AAYVPLGHDYT--GAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKEGLT 408

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQV 538
           +R    D +L SYVL+S  + HD+ ++A K+L       +++       I  + ++  + 
Sbjct: 409 IRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKA 468

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL   L P +  EK L  V+E+++ P++ ++ +ME+ G+ +D  +L+ 
Sbjct: 469 TAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQA 528

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+   +  LE+  Y L+G +FNLSSPKQL  IL+ +LK P   KT  GQ   TA+++
Sbjct: 529 QSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQPS-TAENV 587

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            Q    D P+ K ILE R L+K+K+TY D LP  ++  ++R+HT Y+   T TGRL+S  
Sbjct: 588 LQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNN 647

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G+KIRRAFI+PP  ++++ADYSQ+ELRI+AHI+K   L + F+   DI
Sbjct: 648 PNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKAFDKEWDI 707

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L  QL I R  A +YI  YF 
Sbjct: 708 HRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAKEYIDIYFK 767

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P +HEY++K +      GYVET+FGRR++  +I++     R   ERAAINAP+QG+AA
Sbjct: 768 RYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINAPMQGTAA 827

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V   L+ + +   +++Q+HDELVFEV E+++      I  +ME+A    + 
Sbjct: 828 DIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEA----VA 883

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V++ V  NW E +
Sbjct: 884 LSVPLVVDVGVGGNWDEAH 902


>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
 gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
          Length = 902

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/979 (35%), Positives = 541/979 (55%), Gaps = 93/979 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L L+DGSS+++RA+YA P L+ +  G P  A+ G  NML KL+   + +    + A
Sbjct: 12  SSKPLILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+++Y  YKANR ++P  L  Q+  +    +A G P I  +G+EADD+IA
Sbjct: 67  VVFDPKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A+++G  V + + DKDL Q+V+    L +T+ +  ++ + V++K+G+PPEK++  
Sbjct: 127 TLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDY 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             LTGD+ DNIPG+P +G KTA   L +Y ++EN++ +A  IK  K  EN+    +    
Sbjct: 187 LTLTGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKG-KVGENLRACID---- 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                    D+P                             L+ R+ T           V
Sbjct: 242 ---------DLP-----------------------------LMRRLVT-----------V 252

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + D+   EN    I+TE +R+  I+           +++ + Q                 
Sbjct: 253 ISDLPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQ--------------DKK 298

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +    Y  I + K  ++W++KL      +F   T   +A  +K + ++ +     +    
Sbjct: 299 VAAFQYATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH-EAAYV 357

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            +   +                  +E+L  LK   E+ +   I  N+KYD  VL + G++
Sbjct: 358 PLWHDYTGAPA---------QLDKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKEGLT 408

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQV 538
           +R    D +L SYVL+S  + HD+ ++A K+L       +++       I  + ++  + 
Sbjct: 409 IRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKA 468

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL   L P +  EK L  V+E+++ P++ ++ QME+ G+ +D  +L+ 
Sbjct: 469 TAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQA 528

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+   +  LE+  Y L+G +FNLSSPKQL  IL+ +LK P   KT  GQ   TA+++
Sbjct: 529 QSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQPS-TAENV 587

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            Q    D P+ K ILE R L+K+K+TY D LP  ++  ++R+HT Y+   T TGRL+S  
Sbjct: 588 LQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNN 647

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G+KIRRAFI+PP  ++++ADYSQ+ELRI+AH++K   L + F+   DI
Sbjct: 648 PNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHVSKDPSLIKAFDKEWDI 707

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L  QL I R  A +YI  YF 
Sbjct: 708 HRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQEYIDIYFK 767

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P +HEY++K +      GYVET+FGRR++  +I++     R   ERAAINAP+QG+AA
Sbjct: 768 RYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINAPMQGTAA 827

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V   L+ + +   +++Q+HDELVFEV E+++      I  +ME+A    + 
Sbjct: 828 DIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEA----VA 883

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V++ V  NW E +
Sbjct: 884 LSVPLVVDVGVGGNWDEAH 902


>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
 gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
          Length = 984

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/987 (33%), Positives = 517/987 (52%), Gaps = 72/987 (7%)

Query: 1   MQK-ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M      L LVDGSS++YRAFYA   L+   DG P NA+ G  NML +L    R E    
Sbjct: 59  MTDTPKTLLLVDGSSYLYRAFYAMTHLT-APDGTPTNAVYGVLNMLRRL----RAEQPHD 113

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             A +FD     FR+E++ DYKA RP +P+ L PQ  ++    +  G   +++   EADD
Sbjct: 114 FCACVFDAKGKNFRHELFEDYKATRPPMPDDLRPQADMLPELVELMGWKVLKVPQVEADD 173

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +I T    A  +   V I + DKD+ QLVS    L +T+K E +D E V +K+G+ P+++
Sbjct: 174 VIGTLAVQAAAQKMNVVISTGDKDMAQLVSEHITLVNTMKNETLDSEGVYQKFGVRPDQI 233

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD +DN+PG+   G KTAA  L EYG+L+NI+  A   K  K  EN+      
Sbjct: 234 RDFLALMGDKVDNVPGVEKCGEKTAAKWLAEYGSLDNIMRQADGFKG-KIGENLRAALPQ 292

Query: 240 ARLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             LS +LV ++TDV ++  L    + L  +  +  +L+   + L F   +          
Sbjct: 293 LPLSYELVTIKTDVDLSAELPNGMDDLRRKAPDWAQLVPHFRRLGFKTWLKEAEN----- 347

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                  ++  D+  KT Q      +  + +    P++L     
Sbjct: 348 ---------------QSAQGHTDDLFADSDAKTVQKQPALPEPGERSIAPRPERL----- 387

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  +   + +    ++L           T +++   ++ + I+I+   
Sbjct: 388 -----------DYQTVTTREQLAALTERLAHSSVIGLDTETTSLEPMKAQLVGISIAFGA 436

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  +I ++      +  +     +I S L+ F EN    KIG N+KYD+ V
Sbjct: 437 G--------DAAYIPVAH-----TFAEQLDWTDIKSSLQPFLENPQLGKIGQNMKYDQHV 483

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPID 531
              +GI+++G   D ML SY+++S    H +  ++++WL     T + +       IP  
Sbjct: 484 FANHGIALQGISGDAMLASYIVESHLG-HGLDELSERWLQLPTITYESLCGKGAKQIPFA 542

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +   +  E+A ++++  L++   LR ++  +K L +Y+ L+ P+  V+  ME  G+ ID
Sbjct: 543 DVPLDKAAEYACQDADFALRIEQHLRTQMD-DKQLAMYQELELPVAQVLFAMERNGVFID 601

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQ 649
            + L Q SA++ K L  LE   + L+G+ FNL+SPKQL DILF ++  P+    KT  G 
Sbjct: 602 SNELAQQSAQLGKELWQLENEAFALAGKPFNLNSPKQLQDILFNQMGLPTKGIKKTAGGS 661

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T    LE++   D P+ K IL+ R L+K+KSTY D LP  I   T RVHT Y+ A  +
Sbjct: 662 YSTDESVLEKL-ADDFPLPKLILQHRSLAKLKSTYTDKLPEMILPATGRVHTNYAQAVAI 720

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS  PNLQNIPI+T+ G+++RRAF +P  + ++SADYSQIELRI+AH++    L  
Sbjct: 721 TGRLASNNPNLQNIPIRTEQGRRVRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPTLQA 780

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+N+ D+HR  AAE+FGV  E ++ + RR+AKTINF +IYG+S F LA  L I    A 
Sbjct: 781 AFQNNEDVHRRTAAEVFGVPPEHITAEQRRYAKTINFGLIYGMSSFGLAKALGIDNMSAE 840

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +IKRYF R+ G+ EY+E+TK   R  GYVET+FGRR++  +I+            A   
Sbjct: 841 MFIKRYFARYTGVAEYMERTKEQARSLGYVETLFGRRLYLPDIHGSAIRRAAAERAAIN- 899

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+A+D+ +RAMI V  +L   + + ++++Q+HDELV +VPE+E+      +   M 
Sbjct: 900 APMQGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPEDELAHIKAQLPQWMS 959

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
                   L VPL   +    NW + +
Sbjct: 960 DVGEGV--LAVPLLAEVGAGKNWDDAH 984


>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
 gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
          Length = 902

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/979 (34%), Positives = 539/979 (55%), Gaps = 93/979 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L L+DGSS+++RA+YA P L+ +  G P  A+ G  NML KL+   + +    + A
Sbjct: 12  SSKPLILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+++Y  YKANR ++P  L  Q+  +    +A G P I  +G+EADD+IA
Sbjct: 67  VVFDPKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A+++G  V + + DKDL Q+V+    L +T+ +  ++ + V++K+G+PPEK++  
Sbjct: 127 TLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDY 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             LTGD+ DNIPG+P +G KTA   L +Y ++EN++ +A+ IK  K  EN+    +    
Sbjct: 187 LTLTGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHANEIKG-KVGENLRACIDDL-- 243

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                            ++ L                      V
Sbjct: 244 -------------------------------PLMRRLVM--------------------V 252

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + D+   EN    I+TE +R+  I+           +++ + Q                 
Sbjct: 253 ISDLPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQ--------------DKK 298

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +    Y  I + K  ++W++KL      +F   T   +A  +K + ++ +    +     
Sbjct: 299 VAAFQYATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHE----- 353

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                ++ L    +          +E+L  LK   E+ +   I  N+KYD  VL + G++
Sbjct: 354 ---AAYVPLGHDYT--GAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKEGLT 408

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQV 538
           +R    D +L SYVL+S  + HD+ ++A K+L       +++       I  + ++  + 
Sbjct: 409 IRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKA 468

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL   L P +  EK L  V+E+++ P++ ++ QME+ G+ +D  +L+ 
Sbjct: 469 TAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQA 528

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+   +  LE+  Y L+G +FNLSSPKQL  IL+ +LK P   KT  GQ   TA+++
Sbjct: 529 QSLELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQPS-TAENV 587

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            Q    D P+ K ILE R L+K+K+TY D LP  ++  ++R+HT Y+   T TGRL+S  
Sbjct: 588 LQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNN 647

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G+KIRRAFI+PP  ++++ADYSQ+ELRI+AHI+K   L + F+   DI
Sbjct: 648 PNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKAFDKEWDI 707

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L  QL I R  A +YI  YF 
Sbjct: 708 HRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQEYIDIYFK 767

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P +HEY++K +      GYVET+FGRR++  +I++     R   ERAAINAP+QG+AA
Sbjct: 768 RYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINAPMQGTAA 827

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V   L+ + +   +++Q+HDELVFEV E+++      I  +ME+A    + 
Sbjct: 828 DIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEA----VA 883

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V++ V  NW E +
Sbjct: 884 LSVPLVVDVGVGGNWDEAH 902


>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
 gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
          Length = 942

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/989 (33%), Positives = 544/989 (55%), Gaps = 60/989 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  LFL+D  + I+R +YA     R    G   +AI GF N L+ +++  + +    
Sbjct: 1   MADQKRLFLLDAYALIFRGYYAFIKNPRINSKGFNTSAIMGFTNSLFDVIRREKPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R E++ +YKANR + PE +   +P+++   +A  IP +E  G EADD
Sbjct: 57  HLAVCFDKDGSKERTEMFAEYKANRDETPEPIREAIPIIQDILKAMHIPVVECAGMEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T    AEKE + V +++ DKD  QLVS    +Y   +     E   I  V KK+ + 
Sbjct: 117 IIGTLAKQAEKENYKVYMVTPDKDFAQLVSENIFMYRPARMGNGIEIWGIPEVQKKFEVE 176

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++    + GDS+DNIPG+PG+G KTA   L++YG++E +L N   +K  K +E ++
Sbjct: 177 RPEQVIDFLGMMGDSVDNIPGLPGVGEKTAKKFLKKYGSMEALLENTDDLKG-KMKEKVI 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E AE  RLS+KL  +  D  +    E   L   +G ++    + LEF +L ++    +  
Sbjct: 236 ENAELGRLSKKLATIFIDCDVKFHAEDYELSMPDGDKVQEIFEELEFRRLKDQFIKLFSG 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +    +  V +         +   + +   T    QFS       +I           ER
Sbjct: 296 EEETKQTQVSN---------SPSAKKNAQATAGAGQFSLFGGDGEEI-----------ER 335

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
               +        Y  +      + +++KL    S  F   T +++   ++ + IA S  
Sbjct: 336 TSSRTNLSDTPHFYQSLNTEMARKIFIEKLLKQKSVCFDTETTSLNTLDAELVGIAFSWE 395

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K          ++       +         ++++  L+ FFEN+   KIG N+KYD  
Sbjct: 396 AGKG--------FYLPFPEEKKE--------AQKLIEELRNFFENDKIEKIGQNLKYDIK 439

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIP 529
           VL +Y I ++G   D M+  Y+++     H++  +A+ +L+YT + I     K  K+   
Sbjct: 440 VLDKYKIDVKGALFDTMIAHYLINPDM-RHNMDVLAETYLNYTPQPISELIGKKGKNQGS 498

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  ++  +  E+A+E++++  QL  L   +L   +   ++  ++ P+++V++ ME+ GI+
Sbjct: 499 MRDVALDKQTEYAVEDADITFQLKNLFEKELEEAETRKLFNEIEIPLVEVLADMELEGIK 558

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D++ LK +S  ++ ++  LE  IY+ +GE+F +SSPKQLG ILF K++      KTKTG
Sbjct: 559 LDEEYLKSLSEALASDIKDLETKIYEAAGEEFLISSPKQLGIILFEKMELSKKPKKTKTG 618

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+  T++D+      +N I++++L++R L K+++TY D+LPN + + T RVHT Y   + 
Sbjct: 619 QYS-TSEDVLSSLAEENDIVQHVLDYRGLVKLQNTYVDALPNQVERTTGRVHTDYVQTTA 677

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A ++    +
Sbjct: 678 ATGRLSSNNPNLQNIPIRTERGKQVRKAFVPRDENYVLLAADYSQIELRIIAALSNEENM 737

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            Q F++  DIH   AA++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  + RSE
Sbjct: 738 IQAFKDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTSLSRSE 797

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + + I  Y+  +P +  +I     F R+NG+V T+ GRR +  +INS  + +R   ER A
Sbjct: 798 SKELIDTYYKTYPKLSNFIADQVEFARENGHVSTVLGRRRYLKDINSRNAIVRGAAERNA 857

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI++HK L++    TKMLLQ+HDELVF+  ++E+    ++I   
Sbjct: 858 VNAPIQGSAADIIKLAMINIHKKLKEENYKTKMLLQVHDELVFDAHKDELEKVQKMIKSE 917

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A      L VPL V++ V  NW E +
Sbjct: 918 MENA----YKLEVPLDVDLGVGKNWLEAH 942


>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
 gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
          Length = 932

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/985 (35%), Positives = 530/985 (53%), Gaps = 66/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  LFL+D  + I+R +YA     R    GL  +AI GF N L ++++  + +    H A
Sbjct: 2   KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLLEVIKKEKPD----HLA 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD      R E++ DYKANR + PE +   +P +    +A  IP IE +G+EADDII 
Sbjct: 58  VAFDKGGSVERTELFADYKANREETPEAIRLAIPYIHEILKALHIPIIEKEGYEADDIIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE- 177
           T +  AEK+ + V +++ DKD  QLVS    +Y   +     E   ++ V +K+ +    
Sbjct: 118 TLSKQAEKQNYLVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEKFEVQNPL 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++    + GD++DNIPG+PG+G KTA  LL ++G++EN+L +  ++K  K RENI    
Sbjct: 178 QVIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSMENLLAHTDQLKG-KLRENIESNK 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E   LS++L  +  DVP+T   E   + + +   +    + LEF +L+     TY     
Sbjct: 237 EKGILSKQLATIMLDVPVTFDEEDFAMSEPDFEAVGRIFEELEFRQLLQNFLRTYQPQMT 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P +              TE       +   F+     + K NS  TP          
Sbjct: 297 TTPPPLTGNKP---------TEGQLSLFTQGDLFAQPQVMSEKKNSTNTPHF-------- 339

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y         Q  +Q L       F   T +++A  ++ + I+      K
Sbjct: 340 ----------YQLADTLMAQQLLLQNLLQQTEVCFDTETTSVNALEAELVGISFCWSAHK 389

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++      +         T ++L   + FFENEH  K+G N+KYD  VL 
Sbjct: 390 G--------YYVPFPTDKA--------ATTKLLETFRPFFENEHIGKVGQNLKYDLKVLQ 433

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            Y I +RG   D M+  Y+L+     H++  +++ +L+YT    + ++   K+   +  +
Sbjct: 434 NYNIEVRGALFDTMIAHYLLNPDM-RHNMDILSETYLNYTPIAIESLIGKGKAQRSMRTV 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              QV+E+A+E+++V  QL  + + ++       +Y  L+ P+I V++ ME  G+ +D  
Sbjct: 493 PLDQVKEYAVEDADVTWQLKNVFKEEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVP 552

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKT 652
            LK+ +  +  ++  LE  I + +GE FNL+SPKQLGDILF KLK      KTKTGQ+ T
Sbjct: 553 FLKEYAKTLDADIAQLEATIAEQAGENFNLASPKQLGDILFEKLKIDSKPKKTKTGQYAT 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L       + I+ +ILEWRQ+ K+KSTY D+LP  +NK T RVHT Y      TGR
Sbjct: 613 SEEVLAPF-ASKHKIVADILEWRQVQKLKSTYVDALPLEVNKLTGRVHTTYMQTVAATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIPI+T  GQ++R+AFI+  P   L+SADYSQIELRI+A +++   +   F
Sbjct: 672 LSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSF 731

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
             + DIHR  AA++F V +E+V+ + R HAKT+NF IIYG+S F L+ Q  + RSE+ + 
Sbjct: 732 LRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTNLSRSESKEL 791

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y+  +P +  YI K   F +++GYVET+ GRR +  +I+S    +R   ER A+NAP
Sbjct: 792 IDTYYATYPNLRNYISKQIQFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAERNAVNAP 851

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   L   +L T+MLLQ+HDELVF+VP+ E+ T   +I  +ME A
Sbjct: 852 IQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTELNTVKPLIKEAMESA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL  ++ V +NW + +
Sbjct: 912 ----FTLAVPLVADLGVGDNWLDAH 932


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Riemerella anatipestifer RA-GD]
          Length = 935

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/989 (35%), Positives = 539/989 (54%), Gaps = 71/989 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
             +  L+LVD  + I+R +YA    P L+    GL  +AI GF N L +L++  R     
Sbjct: 4   NTDKKLYLVDAYAMIFRGYYAFIRNPRLTT--GGLDTSAIYGFTNSLIELIKKER----P 57

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV+FD      R+E + DYKANR + PE +   +P +    +A  IP + ++G+EAD
Sbjct: 58  THLAVVFDVGRQNVRHEDFSDYKANRAETPEAIKIAVPYIHRILKAMHIPILGVEGYEAD 117

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D+I T    AEK+G+ V +++ DKD  QLV+    +Y    +    E + ++ V++K+ I
Sbjct: 118 DVIGTIAGKAEKQGYEVFMVTPDKDFAQLVTEHIKIYKPGLKGGDVEILGVKEVLEKYEI 177

Query: 175 P-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P++++    + GDS+DNIPG+ G+G KTA   ++EYG++EN+L N  ++K  K RE +
Sbjct: 178 ENPKQIIDYLGMMGDSVDNIPGLEGVGEKTAKKFIKEYGSMENLLANTHQLKG-KLREKV 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
              AE   +S+KL  +  D PI    E   LE  N   +    + +EF +L   +   + 
Sbjct: 237 EASAERGLMSKKLATILCDAPIEFHQEEYDLETPNFEEVKQIFEEIEFRRLYENLYKAFS 296

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            + +                 A E + D+D+     Q    SD  +   +  T   +   
Sbjct: 297 TENS-----------------AEEKKSDKDSVQSPVQLDLFSDFEALEQATTTKHTIED- 338

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  I   K     +Q L    +  F   T ++D   ++ I I+ S 
Sbjct: 339 ----------REHLYQYIDTEKGQLLLLQNLLKQKAVCFDTETTSLDEMEAELIGISFSY 388

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                    K    ++ +  + ++         + I+   + FFE E  LKI HN+KYD 
Sbjct: 389 K--------KGLAYYVPIPENRAE--------AQAIVERFRPFFEKESILKIAHNLKYDY 432

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSI 528
            VL  YGI + G   D M+  Y+L+     H +  +++ +L+Y    +     K  K   
Sbjct: 433 KVLLNYGIEVTGNLFDTMIAHYLLNPD-GRHGMDYLSEMYLNYKPIALETLIGKKGKGQK 491

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            + +I      ++A E++++  QL+ +  P+L  E++  V+ +++ P++ V+++ME+TG+
Sbjct: 492 TLREIDLPTQTQYAAEDADITFQLYEIFSPQLKKEEVEEVFYKIEMPLVKVLAKMELTGV 551

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
            +D++ LK  S  + ++L  LE  I++ +GE+FN++SPKQLGDILF KLK  P   KTKT
Sbjct: 552 ALDEEWLKDESISLEQDLKILEGQIFEQAGEEFNINSPKQLGDILFEKLKLDPKAKKTKT 611

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+  T++D+ Q     + IIK ILE+RQL K+KSTY D+LPN I+    RVHT ++   
Sbjct: 612 GQYS-TSEDVLQKLSHKHEIIKLILEYRQLQKLKSTYVDALPNQISPIDGRVHTSFAQTV 670

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRLAS  PNLQNIPI+T+ GQ++R AF++P   K++SADYSQIELR++A I+    +
Sbjct: 671 AATGRLASNNPNLQNIPIRTERGQQVRGAFVAPKGSKIVSADYSQIELRLIAEISGEETM 730

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F+   DIH   A+++F V + +VS   R  AKT+NF IIYG S F LA Q  + R++
Sbjct: 731 IKAFKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGIIYGQSAFALADQTGLSRTD 790

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A   I  Y+  +P +  ++ +     R+ GYVETI GR+ H  +INS    +R   ER A
Sbjct: 791 AKQLIDSYYETYPKLKAFMTEQVQVARKKGYVETIMGRKRHLKDINSNNFVVRGHAERNA 850

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI +   ++   L TKMLLQ+HDELVFEVP EEI  A+ +I   
Sbjct: 851 VNAPIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQVHDELVFEVPNEEIEVATTLIKQE 910

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A       +VPL   + V +NW E +
Sbjct: 911 METAYST----KVPLLTEVGVGDNWLEAH 935


>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
 gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
          Length = 932

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/985 (34%), Positives = 527/985 (53%), Gaps = 66/985 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  LFL+D  + I+R +YA     R    GL  +AI GF N L ++++  + +    H A
Sbjct: 2   KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLLEVIKKEKPD----HLA 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD      R +++ DYKANR + PE +   +P +    +A  IP IE +G+EADDII 
Sbjct: 58  VAFDKGGSVERTKLFADYKANREETPEAIRLAIPYIHEILKALHIPIIEKEGYEADDIIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE- 177
           T +  AEK+ + V +++ DKD  QLVS    +Y   +     E   ++ V +K+ +    
Sbjct: 118 TLSKQAEKQNYQVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEKFEVQNPL 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++    + GD++DNIPG+PG+G KTA  LL ++G++EN+L +  ++K  K RENI    
Sbjct: 178 QVIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSMENLLAHTDQLKG-KLRENIESNK 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E   LS++L  +  DVP+    E   + + +   +    + LEF +L+     TY  +  
Sbjct: 237 EKGILSKQLATIMLDVPVRFDEEDFAMSEPDFEAVGRIFEELEFRQLLQNFLRTYQPEMP 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P V              TE       +   F+     + K NS  TP          
Sbjct: 297 TAPPPVTGNKP---------TEGQLSLFTQGDLFAQPQVMSEKKNSTNTPHF-------- 339

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y         Q  +Q L       F   T +++A  ++ + I+      K
Sbjct: 340 ----------YQLADTPMAQQLLLQNLLQQTEVCFDTETTSVNALEAELVGISFCWSAHK 389

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++                  ++L   + FFENE   K+G N+KYD  VL 
Sbjct: 390 G--------YYVPFPT--------DKVEATKLLETFRPFFENERIGKVGQNLKYDLKVLQ 433

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            Y I +RG   D M+  Y+L+     H++  +++ +L+YT    + ++   K+   +  +
Sbjct: 434 NYNIEVRGALFDTMIAHYLLNPDM-RHNMDILSETYLNYTPIAIESLIGKGKAQRSMRTV 492

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              QV+E+A+E+++V  QL  + + ++       +Y  L+ P+I V++ ME  G+ +D  
Sbjct: 493 PLDQVKEYAVEDADVTWQLKNVFKEEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVP 552

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKT 652
            LK+ +  +  ++  LE  I + +GE FNL+SPKQLGDILF KLK      KTKTGQ+ T
Sbjct: 553 FLKEYAKTLDADIAQLEATIAEQAGESFNLASPKQLGDILFEKLKIDSKPKKTKTGQYAT 612

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L       + I+ +ILEWRQ+ K+KSTY D+LP  +NK T RVHT Y      TGR
Sbjct: 613 SEEVLAPF-ASKHKIVADILEWRQVQKLKSTYVDALPLEVNKLTGRVHTTYMQTVAATGR 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIPI+T  GQ++R+AFI+  P   L+SADYSQIELRI+A +++   +   F
Sbjct: 672 LSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSF 731

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
             + DIHR  AA++F V +E+V+ + R HAKT+NF IIYG+S F L+ Q  + RSE+ + 
Sbjct: 732 LRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTNLSRSESKEL 791

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y+  +P +  YI K   F +++GYVET+ GRR +  +I+S    +R   ER A+NAP
Sbjct: 792 IDTYYATYPNLRNYISKQIQFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAERNAVNAP 851

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   L   +L T+MLLQ+HDELVF+VP+ E+     +I  +ME A
Sbjct: 852 IQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTELNIVKPLIKEAMESA 911

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                NL VPL  ++ V +NW + +
Sbjct: 912 ----FNLAVPLVADLGVGDNWLDAH 932


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/983 (33%), Positives = 524/983 (53%), Gaps = 75/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + +FL+D  + I+R++YA     R    GL  +AI GF N L +++   +     +H  V
Sbjct: 27  DKIFLIDAYALIFRSYYAFIKNPRINSKGLNTSAIMGFFNTLHEVITKEQ----PTHIGV 82

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRNE +P YKA R   PE +   +P ++   +A  IP ++  GFEADD+I T
Sbjct: 83  AFDV-GKTFRNEAFPQYKAQREATPEDIKLSVPYIQDILKAMHIPILQADGFEADDVIGT 141

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPP-EKM 179
                  +G    +++ DKD  QL+     +Y        E +  + + +K+ IP   ++
Sbjct: 142 LATRFSADGIDTFMLTPDKDYGQLIGSHVYMYRPRHGGGYEILGEKEIKEKYNIPKTSQV 201

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GD+ DN PG PG+G KTA+ L+ E+G+++NIL N  +IK  K +E I    + 
Sbjct: 202 IDLLALMGDAADNFPGCPGVGEKTASKLINEFGSIDNILSNTDKIKG-KLKEKIENAVDD 260

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +R DVPI I L+ L  E+ +  +L      LEF  L+N+        A N+
Sbjct: 261 IKMSKFLATIRRDVPINIKLDELKTEEPDINKLHEIFTELEFRNLLNKYVKNSKEIAKNV 320

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
              +   N                                    E T +      L    
Sbjct: 321 NNQLDLFN------------------------------------ENTGEDTNSSILSDFK 344

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                +  Y  I N ++  +    L T    S    T + +   ++ + ++ S    K  
Sbjct: 345 SLKSVHYEYQLIDNEEEAIRVCDFLFTSDILSLDTETTSTNTMQAELVGLSFSIEPNK-- 402

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   +I +     +         +++++  K  +E +  LKIG NIKYD  VL +Y
Sbjct: 403 ------AFYIAIPSDRDK--------AQKMVNIFKPLYEEDKILKIGQNIKYDYEVLAQY 448

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK-SRKSSIPIDKIS 534
           GI+++G   D M+  Y++      H++  +A+  L+Y      E++    K    +  +S
Sbjct: 449 GINIKGKMFDTMIAHYLIQPELH-HNMDYMAETLLNYKTIHIDELIGAKGKEQKNMRNLS 507

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + + E+A E++++ LQL+ +L PKL       ++  ++ P++ V++ ME+ G+ +D D 
Sbjct: 508 PTSIYEYACEDADITLQLYNVLLPKLKDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDA 567

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653
           L++ S   +K + + E  IY+ +GEKFN+SSPKQ+GDILF K++      KTK GQ+ T 
Sbjct: 568 LQETSNIFTKRMQTYEAQIYEQAGEKFNISSPKQVGDILFGKMQIMEKPKKTKKGQYVTN 627

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+ +    +PI++NIL +R + K+  TY D+LP  INKRT R+HT ++ A T TGRL
Sbjct: 628 EEVLQSLEAS-SPIVRNILNYRGIKKLLGTYVDALPKLINKRTGRIHTSFNQALTATGRL 686

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++TD G++IR+ FI  P     SADYSQIELRI+AH++K   + + F +
Sbjct: 687 SSSDPNLQNIPVRTDDGKEIRKCFIPEPECVFFSADYSQIELRIMAHLSKDENMIEAFRS 746

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AA+I+ + +E V+   R+ AK  NF IIYGI+ + LA ++ IP +EA   I+
Sbjct: 747 GYDIHRATAAKIWHIPMEDVTDTQRKKAKQANFGIIYGITTYGLAQRMGIPNNEAKKLIE 806

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF+ FP +H+++E  K   R+ GY ETIFGRR + ++INS  S++R   ER AINAPIQ
Sbjct: 807 DYFNTFPKVHDFMESAKELARKKGYAETIFGRRRYLNDINSKNSTVRGFAERNAINAPIQ 866

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+ ADI + AMI +++      + +KM+LQ+HDEL F V  +E      I++  M+ AC 
Sbjct: 867 GTEADIIKVAMIRIYERFCRENIRSKMILQVHDELNFSVFPDEKERVEHIVLEEMQAAC- 925

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL  +     NW E +
Sbjct: 926 ---TLSVPLIADAGWGKNWLEAH 945


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score =  895 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/982 (33%), Positives = 532/982 (54%), Gaps = 75/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    GL  +AI GFCN L ++L   +     ++  V 
Sbjct: 3   KLFLLDAYALIYRSYYAFIKNPRINSKGLNTSAIMGFCNTLNEVLTKEK----PTYIGVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+  +TFRNE +P YKA R + PE +   +PL++   +A+ IP +++ GFEADD+I T 
Sbjct: 59  FDH-GLTFRNEAFPQYKAQREETPEDIRKSVPLIKDILKAYHIPILQVDGFEADDVIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIP-PEKMV 180
              A+  G    +++ DKD  QLVS    ++        E +    V++K+GI  P+ ++
Sbjct: 118 ATQAQDAGVETFMLTPDKDYGQLVSDNVFIFRPRHGGGYETMGEREVMEKYGISSPKLVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GD+ DN PG PG+G KTA  L+ E+G +E+++   S +K    +  +  + +  
Sbjct: 178 DLLALMGDASDNFPGCPGVGEKTAVKLINEFGTVEDLMARTSELKGA-LKTKVETHLDDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S+ L  +RTDVPI + L+ L L + +  RL      LEF    +R+    +    N  
Sbjct: 237 KMSKFLATIRTDVPIDLQLDELKLVEPDHTRLTEIFTELEFKSFADRILNKSEKKPINT- 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                              +Q   + +  T +   +        
Sbjct: 296 -----------------------------------NQQLDLFAVNTTEHADVTEKTNYDT 320

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I N +++Q+      T  + S    T ++ A  ++ + ++ +  ++    
Sbjct: 321 IKTVQHDYKLIENEEEMQRVCDLFLTKQTVSIDTETTSLYAMDAELVGLSFAVEER---- 376

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               +  ++ +     +         ++I++  K  +E+E  +K+G N+KYD  VL  YG
Sbjct: 377 ----QAFYVPVPADRKE--------AEKIVNIFKPLYESEAIMKVGQNMKYDLEVLRNYG 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKISD 535
           + +RG   D M+  Y++      H++  +A+ +L+Y    I        K    + ++S 
Sbjct: 425 VCLRGALFDTMIAHYLIQP-ELRHNMDYMAEVYLNYQTIHIDTLIGAKGKHQKSMRELSP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +QV E+A E++++ LQL  +L PKL   +   ++ +++ P++ V+++ME+ G++ID   L
Sbjct: 484 AQVYEYAAEDADITLQLKNVLEPKLREVEAEELFYQIEMPLVPVLAEMEMNGVRIDTQSL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTA 654
           K+ S  +++ +  LE  IY+L+G +FN++SPKQ+GD+LF ++K      KTKTGQ+ T+ 
Sbjct: 544 KETSDILTRRMHDLEARIYELAGGEFNIASPKQVGDMLFGRMKIIDKPKKTKTGQYVTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+Q+  G + I+ +IL++R L K+  TY D+LP  IN RT R+HT ++   T TGRL+
Sbjct: 604 EVLQQLR-GKHEIVGDILDYRGLKKLLGTYVDALPKLINTRTGRIHTSFNQTVTATGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP++ + G++IR+AFI        SADYSQIELR++AH++    + + F   
Sbjct: 663 SSEPNLQNIPVRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAHMIEAFREG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AA+I+G  +E V+   R  AK  NF IIYGI+ F LA +L I R+EA   I  
Sbjct: 723 YDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIYGITVFGLAERLDIDRNEAKQLIDG 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP + +Y+E +K   R +GYVETIF RR +  +INS  +++R   ER AINAPIQG
Sbjct: 783 YFMMFPQVKDYMEHSKEVARTHGYVETIFHRRRYLPDINSHNATVRGFAERNAINAPIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI +++      + +KM+LQ+HDEL F V  EE     +I++  M++A   
Sbjct: 843 SAADIIKVAMIRIYRRFMKEGIRSKMILQVHDELNFSVFPEEKERVERIVMEEMQQA--- 899

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              LRVPL  +     NW E +
Sbjct: 900 -YPLRVPLVADSGWGTNWLEAH 920


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score =  895 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/985 (35%), Positives = 527/985 (53%), Gaps = 70/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  LFL+D  + I+R +YA     R    GL  +AI GF N L+++++  + +    H A
Sbjct: 2   KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLFEVIKKEKPD----HLA 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD      R E++ DYKANR + PE +   +P +    +A  IP IE +G+EADDII 
Sbjct: 58  VAFDKGGSVARTELFADYKANREETPEAIRLAIPYIHEILKALHIPIIEKEGYEADDIIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE- 177
           T +  AE + + V +++ DKD  QLVS    +Y   +     E   ++ V +K+ +    
Sbjct: 118 TLSKQAEAQDYQVYMVTPDKDYAQLVSDNIFMYRPARSGNDIEIWGVKEVQEKFEVQNPL 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++    + GD++DNIPG+PG+G KTA  LL ++G++EN+L N  ++K  K RENI    
Sbjct: 178 QVIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSMENLLANTDKLKG-KLRENIENNK 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E   LS++L  +  DVP+T       +   +   +      LEF +L+     TY  +A 
Sbjct: 237 EKGILSKQLATIMLDVPVTFDEADFAMSQPDFEAVGKIFDELEFRQLLQNFLKTYQPEAV 296

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P                     D   +   F+     + K NS  TP          
Sbjct: 297 VQAP-------------PKAASGQLDLFSQGDLFAQPQLVSDKKNSSNTPHF-------- 335

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y         Q  +Q L       F   T  +DA  ++ + I+      K
Sbjct: 336 ----------YQLADTPMAQQLLLQSLLQQTEVCFDTETTNVDALEAELVGISFCWAAHK 385

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++            +     +++   + FFENE   K+G N+KYD  VL 
Sbjct: 386 G--------HYLPFPK--------EKEAATKLIEQFRPFFENEQIAKVGQNLKYDLKVLQ 429

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            YG+ ++G   D M+  Y+L+     H++  +++ +L+YT    + ++   K+   +  +
Sbjct: 430 NYGVEVQGALFDTMIAHYLLNPDM-RHNMDILSETYLNYTPIAIESLIGKGKAQRSMRTV 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +V+E+A+E+++V  QL  + + ++       +Y  L+ P+I V++ ME  G+ +D D
Sbjct: 489 PIDEVKEYAVEDADVTWQLKNVFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVD 548

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKT 652
            LK+ S  +  ++  LE  I   +GE FNL+SPKQLGDILF KLK      KTKTGQ+ T
Sbjct: 549 FLKEYSKTLDADIAQLETAIAQQAGETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYAT 608

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L       + I+ +ILEWRQ+ K+KSTY D+LP  +NK T RVHT Y      TGR
Sbjct: 609 SEEVLAPFAA-KHKIVADILEWRQVQKLKSTYVDALPLEVNKSTGRVHTTYMQTVAATGR 667

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIPI+T  GQ++R+AFI+  P   L+SADYSQIELRI+A +++   + + F
Sbjct: 668 LSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIESF 727

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIHR  AA++F V +E+V+ + R HAKT+NF IIYG+S F L+ Q  + RSE+ + 
Sbjct: 728 LHGEDIHRATAAKVFNVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTDLSRSESKEL 787

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y+  +P +  YI +   F R++GYVETI GRR +  +I+S    +R   ER A+NAP
Sbjct: 788 IDTYYATYPNLRNYINRQIEFAREHGYVETILGRRRYLPDIHSHNQVVRGGAERNAVNAP 847

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +H  L+  KL T+MLLQ+HDELVF+VP+ E+     +I  +ME A
Sbjct: 848 IQGSAADIIKIAMIRIHNQLQAQKLQTRMLLQVHDELVFDVPKTELELVKPLIKDAMENA 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL  ++ V NNW + +
Sbjct: 908 ----FTLAVPLVADLGVGNNWLDAH 928


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/984 (34%), Positives = 531/984 (53%), Gaps = 68/984 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+D  + I+R +YA     R    G+  +AI GF N L ++++  +        AV
Sbjct: 2   KKLFLLDAYALIFRGYYAFIKNPRINSKGMNTSAIVGFMNSLLEVIRKEQPHL----LAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD      R  I+  YKANR + PE +   +P +    +A  IP IE +G+EADDII T
Sbjct: 58  CFDKGGSQQRLAIFDQYKANREETPEAIRFAIPYIHQILKAMQIPIIEKEGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI-PPEK 178
               AEK+G+ V +++ DKD  QLVSP   +Y   +     E   +E V + +G+  PE+
Sbjct: 118 LAKQAEKQGYTVYMVTPDKDYGQLVSPNIFMYKPARGGKDTEIWGVEEVKENFGVDTPEQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L  + GD++DNIPG+PG+G KTA  LL+E+G++EN+L N  ++K  K RENI    +
Sbjct: 178 VIDLLGMMGDAVDNIPGLPGVGEKTAQKLLKEFGSMENLLANTDKLKG-KLRENIQANKD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS+ L  +  DVP++   +   L       +I     LEF  ++  +   +  +   
Sbjct: 237 KGILSKTLARIILDVPVSFDEKDFELSSPKMEEIIPLFDQLEFRTMLTTLQKAFTKEETQ 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                             S+  + +  +    P    +E +++L
Sbjct: 297 PN------------------------------LFSIGQKATNSSMITNPTLFDMESIKRL 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +    +++  + +L       F   T +++   ++ + +A+S    K 
Sbjct: 327 KTIKEVPHEYQLLTTQTEVEALLPELLAQKEICFDTETTSLNEMEAQIVGLALSYEIHKG 386

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                                    +L K+    LK FFENE  LKIG N+KYD  +L  
Sbjct: 387 YYIL----------------FPEDFSLAKQWFLLLKPFFENESILKIGQNLKYDFKILAN 430

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKI 533
           YGI ++G F D M+  Y+L+     H++  +++ +L Y+   I     K  K  + +  +
Sbjct: 431 YGIEVKGEFFDTMIAHYLLNPDM-RHNMDLLSEAYLGYSPISIETLIGKKGKGQLTMRAV 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                +E+A+E+++V LQL  +  P L  +++L ++ +++ P+++V++QME  GI++D  
Sbjct: 490 PAELQKEYAVEDTDVTLQLKHVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTH 549

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L Q+S EI+ +L+ LE+ I+  + E FNLSSPKQLGDILF KLK  S  K        T
Sbjct: 550 FLAQLSKEIAADLIGLEKTIFSQAEESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYAT 609

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           ++++       + I+ N+LE+R L K++STY ++LP  +N  T R+HT +  A T TGRL
Sbjct: 610 SEEVLSELASKHEIVANVLEFRALQKLQSTYIEALPREVNPHTGRIHTTFMQAVTATGRL 669

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+T  G +IR+AF+       L+SADYSQIELRI+A +++   + + F 
Sbjct: 670 SSNQPNLQNIPIRTPRGSQIRKAFVPRNEDYTLLSADYSQIELRIIAALSEEDHMIEAFL 729

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR  AA++FGV +E V+ + R HAKT+NF IIYG+S   L+ Q  + RS++ + I
Sbjct: 730 EGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSAIGLSQQTSLSRSQSKELI 789

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             Y+  +P +  YIEK   F R++GYV+TI GRR +  ++ S    +R   ER A+NAPI
Sbjct: 790 DTYYQTYPKLKTYIEKQIFFAREHGYVQTILGRRRYLPDVYSRNQVVRGAAERNAVNAPI 849

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM+ + + ++   LAT+MLLQ+HDEL+F+VP++E+  A  +I   ME A 
Sbjct: 850 QGSAADIIKIAMVRIAQRIQKEGLATRMLLQVHDELLFDVPKKELEVAKALIREEMENA- 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V I   NNW E +
Sbjct: 909 ---YTLIVPLIVEIGTGNNWLEAH 929


>gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 929

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/985 (34%), Positives = 528/985 (53%), Gaps = 69/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  LFL+D  + I+R +YA     R    GL  +AI GF N L+ +++  R      H A
Sbjct: 2   KKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLFDVMKKERPH----HLA 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD      R E++ DYKANR + PE +   +P +     A  IP IE +G+EADDII 
Sbjct: 58  VAFDKGGSVARTELFADYKANREETPEAIRIAIPYIHQILNALHIPIIEKEGYEADDIIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE- 177
           T    AEK+ + V +++ DKD  QLVS    +Y   +     E   ++ V +K+ +    
Sbjct: 118 TLAKQAEKQDYQVYMVTPDKDYAQLVSDNIFMYRPPRGGNDIEIWGVKEVQEKFEVQNPL 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++    + GD++DNIPG+PG+G KTA  LL ++G+LEN+L N  ++K  K RENI    
Sbjct: 178 QVIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSLENLLANTDQLKG-KLRENIENNK 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E   LS++L  +  DVP+    +   +   +   +    + LEF +L+      Y  +A 
Sbjct: 237 EKGILSKQLATIMLDVPVVFDEKDCEVSTPDFEAVGKLFEELEFRQLLVNFQKVYQPEA- 295

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   +  +  K  + + ++     ++   F+       K  +  TP          
Sbjct: 296 --------VVQSNQKAPSAQLDMF---AVQGDLFAQPQVAVEKKTAANTPHY-------- 336

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y         Q  +Q L       F   T  +DA  ++ + I+      K
Sbjct: 337 ----------YQLADTPMAQQLLLQSLLQQTEVCFDTETTAIDALEAELVGISFCWTAHK 386

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++   V   +           +L+ L+ FFENE   K+G N+KYD  VL 
Sbjct: 387 G--------YYVPFPVDKEE--------ATALLNTLRPFFENEKITKVGQNLKYDLKVLQ 430

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            YGI ++G   D M+  Y+++     H++  +++ +L YT    + ++   K+   +  +
Sbjct: 431 NYGIKVQGALFDTMIAHYLINPDM-RHNMDLLSETYLGYTPIAIESLIGKGKAQRSMRTV 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  +V+E+A+E+++V  QL  + + +L       VY  L+ P++ V++ ME  G+ +D  
Sbjct: 490 ALEEVKEYAVEDADVTWQLKDVFKAELPKVNAQKVYADLEMPLLKVLAVMEREGVTLDVA 549

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKT 652
            LK+ S  +   +  LE  I + +G  FNL+SPKQLGDILF KLK      KTKTGQ+ T
Sbjct: 550 YLKEYSKTLDAEIAQLEATIAEQAGTPFNLASPKQLGDILFEKLKIDSKPKKTKTGQYAT 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + L       + I+ +ILEWRQ+ K+KSTY D+LP  +N RT RVHT Y      TGR
Sbjct: 610 SEEVLAPFAA-KHKIVADILEWRQVQKLKSTYVDALPLEVNPRTGRVHTTYMQTVAATGR 668

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIPI+T+ GQ++R+AFI+      L+SADYSQIELRI+A +++   + + F
Sbjct: 669 LSSNNPNLQNIPIRTERGQRVRKAFIARNDDYILLSADYSQIELRIIAALSEEHNMIESF 728

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIHR  AA++F V +E V+ + R HAKT+NF IIYG+S F L+ Q  + RS++ + 
Sbjct: 729 LHGEDIHRATAAKVFNVPLEAVTREQRSHAKTVNFGIIYGVSAFGLSAQTDLSRSQSKEL 788

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y+  +P +  YI+K  +F +++GYVET+ GRR +  +I+S    +R   ER A+NAP
Sbjct: 789 IDTYYATYPNLRNYIQKQIHFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAERNAVNAP 848

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI ++  L+  +L T+MLLQ+HDELVF+VP+ E+     +I   ME A
Sbjct: 849 IQGSAADIIKIAMIRIYDLLQAQQLQTRMLLQVHDELVFDVPKTELEIVKPLIKEVMESA 908

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL  ++ V NNW + +
Sbjct: 909 ----FTLAVPLVADLGVGNNWLDAH 929


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
          Length = 920

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/982 (33%), Positives = 517/982 (52%), Gaps = 75/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + I+R++YA     R    GL  +AI GF N L +++         +H  V 
Sbjct: 3   KLFLIDAYALIFRSYYAFIKNPRINSKGLNTSAIMGFFNTLNEVITKEN----PTHIGVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRNE +P+YKA R   PE +   +P +R   +A  IP ++ +GFEADD+I T 
Sbjct: 59  FDIGE-TFRNEAFPEYKAQRDATPEDIKAAVPYIREILEAMHIPTLQAEGFEADDVIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPE-KMV 180
                 +G    +++ DKD  QL+     +Y        E +    + +K+GIP   ++V
Sbjct: 118 ATRFGADGIDTFMLTPDKDYGQLIGDHIYMYRPQHGGGYEVVGEPQIQEKYGIPSAAQVV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GDS DN PG PG+G KTAA L+ E+G+++ +L     IK  K RE +  +    
Sbjct: 178 DLLALMGDSADNFPGCPGVGEKTAAKLINEFGSIDEMLARTGEIKG-KLREKVESHIHDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S+ L  +R DVPI + L+ L LE+ N  +L      LEF  L+N+             
Sbjct: 237 KMSKFLATIRRDVPIEVSLDELKLEEPNEEKLREIFTELEFRTLLNKFVKKG-------- 288

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                  +  K +Q            +E TP    + +      
Sbjct: 289 --------------------KEKSKSKNNQLDLF--------AENTPDTPDVPKFSNFES 320

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I N ++  +    L T    S    T + D   ++ + ++ +  ++K   
Sbjct: 321 IKTVEHEYKLIDNEEEASKLCDFLLTSKVLSLDTETTSTDTMQAELVGLSFAIEEKK--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +     +         ++ ++  +  +ENE+ LK+G NIKYD  VL +YG
Sbjct: 378 -----AFYVAIPSDRRE--------AEKFVNIFRPLYENENILKVGQNIKYDYEVLAQYG 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK-SRKSSIPIDKISD 535
           I ++G   D M+  Y++      H++  +A+  L Y      E++    K    +  +S 
Sbjct: 425 IDIKGKMFDTMIAHYLIQPELH-HNMDYMAETLLGYKTVHIDELIGAKGKHQKNMRDLSP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + E+A E++++ LQL+ +L PKL       ++ +++ P++ V++ ME+ G+ +D D L
Sbjct: 484 TDIYEYASEDADITLQLYKVLEPKLKEVNAEDLFWKIEMPLVRVLADMEMNGVCLDTDAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTA 654
            + S   +  +   E  IY+ + EKFN+SSPKQ+GDILF K++      KTKTGQ+ T+ 
Sbjct: 544 AETSKIFTDRMNEYEALIYEQASEKFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+ +     PI+ NIL++R + K+ STY D+LP  INKRT  +HT ++ A T TGRL+
Sbjct: 604 EVLQSLEASA-PIVGNILKYRGIKKLLSTYIDALPKLINKRTGHIHTSFNQALTATGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++TD G++IR+ FI  P     SADYSQIELRI+AH+++   + + F + 
Sbjct: 663 SSDPNLQNIPVRTDDGKEIRKCFIPEPKCLFFSADYSQIELRIMAHLSQDENMMEAFRSG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA+I+ V +E+VS   R+ AK  NF IIYGI+ + LA ++ IP  EA + I+ 
Sbjct: 723 HDIHRATAAKIWHVPMEEVSDAQRKKAKQANFGIIYGITTYGLAQRMGIPNGEAKELIEG 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP +  ++EK K   R+ GY ET+F RR +  +INS   ++R   ER AINAPIQG
Sbjct: 783 YFKTFPSVKAFMEKAKQTAREKGYAETLFNRRRYLSDINSKNGTVRGFAERNAINAPIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AMI + +      + +KM+LQ+HDEL F V  EE     +I++  M+ A   
Sbjct: 843 TEADIIKVAMIRIWERFRRENIRSKMILQVHDELNFSVFPEEKEKVERIVIEEMQAA--- 899

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL  +    NNW E +
Sbjct: 900 -YPLNVPLVADAGWGNNWLEAH 920


>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
 gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
          Length = 876

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/938 (35%), Positives = 502/938 (53%), Gaps = 71/938 (7%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG- 179

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTK 283
              +N+    +   L+RKLV + T   +   +E     L  +      L        F  
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKT 239

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
            +  + +                          E           +     S  T+++  
Sbjct: 240 WLRELDS--------------------------EPAAAAGAAAAGAAPDPASGATAELLL 273

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
                                  +Y  +   +    W+  +      +F   T ++D   
Sbjct: 274 ATA-------------------RNYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMR 314

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++ + ++ S           V     D+     +D         E+L+ L  + E+    
Sbjct: 315 AQIVGLSFSVEPG-HAAYVPVAHRGPDMPAQLPRD---------EVLAKLTPWLEDAGKK 364

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKE 519
           K+G ++KYD  VL  YGI++ G   D +L SYVL+S R+ HD+ S+A + L       ++
Sbjct: 365 KLGQHLKYDAQVLANYGIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYED 423

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMID 578
           +       I  D++  +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  
Sbjct: 424 VAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSL 483

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+ +ME TG+ ID D L + S EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+
Sbjct: 484 VLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQ 543

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT +G   T  + L+++   D P+ K +LE R LSK+KSTY D LP  +N  T R
Sbjct: 544 LPVVKKTPSGAPSTDEEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGR 602

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y+ A  +TGRLAS +PNLQNIP++T  G++IR AF++PP  K++SADYSQIELRI+
Sbjct: 603 VHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIM 662

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AHI++   L + F +  DIHR  AAE+FGV   +V+   RR AK INF +IYG+S F LA
Sbjct: 663 AHISEDESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLA 722

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
           + L I R  A  YI RYF R+PG+  Y+E+T+   ++ GYVET+FGRR+   EIN     
Sbjct: 723 SNLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGP 782

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ERAAINAP+QG+AAD+ + +MI+V   LE   L  +M++Q+HDELV EVPE+E++
Sbjct: 783 RRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS 842

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              + +   M         L+VPL   + V  NW+E +
Sbjct: 843 IVREKLPEMMCGVA----KLKVPLVAEVGVGENWEEAH 876


>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
 gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
          Length = 902

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/979 (35%), Positives = 543/979 (55%), Gaps = 93/979 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L L+DGSS+++RA+YA P L+ +  G P  A+ G  NML KL+   + +    + A
Sbjct: 12  SSKPLILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR+++Y  YKANR ++P  L  Q+  +    +A G P I  +G+EADD+IA
Sbjct: 67  VVFDPKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A+++G  V + + DKDL Q+V+    L +T+ +  ++ + V++K+G+PPEK++  
Sbjct: 127 TLAKKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDY 186

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             LTGD+ DNIPG+P +G KTA   L +Y ++EN++ +A  IK  K  EN+    +    
Sbjct: 187 LTLTGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKG-KVGENLRACID---- 241

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                    D+P                             L+ R+ T           V
Sbjct: 242 ---------DLP-----------------------------LMRRLVT-----------V 252

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + D+   EN    I+TE +R+  I+           +++ + Q                 
Sbjct: 253 ISDLPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQ--------------DKK 298

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +    Y  I + K  ++W++KL      +F   T   +A  +K + ++ +    +     
Sbjct: 299 VAAFQYATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHE----- 353

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                ++ L    +          +E+L  LK   E+ +   I  N+KYD  VL + G++
Sbjct: 354 ---AAYVPLGHDYT--GAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKEGLT 408

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQV 538
           +R    D +L SYVL+S  + HD+ ++A K+L       +++       I  + ++  + 
Sbjct: 409 IRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKA 468

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL   L P +  EK L  V+E+++ P++ ++ QME+ G+ +D  +L+ 
Sbjct: 469 TAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQA 528

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+   +  LE+  Y L+G +FNLSSPKQL  IL+ +LK P   KT  GQ   TA+++
Sbjct: 529 QSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQPS-TAENV 587

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            Q    D P+ K ILE R L+K+K+TY D LP  ++  ++R+HT Y+   T TGRL+S  
Sbjct: 588 LQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNN 647

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T+ G+KIRRAFI+PP  ++++ADYSQ+ELRI+AHI+K   L + F+   DI
Sbjct: 648 PNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKAFDKEWDI 707

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L  QL I R  A +YI  YF 
Sbjct: 708 HRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQEYIDIYFK 767

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P +HEY++K +      GYVET+FGRR++  +I++     R   ERAAINAP+QG+AA
Sbjct: 768 RYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINAPMQGTAA 827

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V   L+ + +   +++Q+HDELVFE+ E+++      I  +ME+A    + 
Sbjct: 828 DIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEMAEKDLEKVIPQIKKAMEEA----VA 883

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V++ V  NW E +
Sbjct: 884 LSVPLVVDVGVGGNWDEAH 902


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/983 (34%), Positives = 529/983 (53%), Gaps = 75/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N LFL+D  + I+R++YA     R    GL  +AI GF N L +++     E    +  V
Sbjct: 2   NKLFLLDAFALIFRSYYALIRAPRINSKGLNTSAILGFVNTLHEIITKENPE----YLGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +P YKA R + PE +   +P+++    AF IP +E++GFEADD+I T
Sbjct: 58  AFDA-GKTFRHEAFPPYKAQRQEPPEDIALSVPIIKEILHAFHIPILEVEGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGI-PPEKM 179
               A  EG    +++ DKD  QL+     +Y        DI   + + +K+GI  PE++
Sbjct: 117 LATKAGNEGVETYMLTPDKDYGQLIRKNVFMYRPRHGGGYDIVGEQEIAEKYGINKPEQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTA  L+ E+G+++ +L +  ++K  K RE +    E 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAVKLINEFGSIDGLLEHTDQLKG-KMREKVEGAVED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVPI + LE L L+  +  +L      LEF  L N++           
Sbjct: 236 IKMSKFLATIRTDVPIELNLEALRLQQPDEQKLSEIFADLEFKTLANKI----------- 284

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                 +N TE K  ++  E D    I ++  S +S + +   S +T +           
Sbjct: 285 ------LNKTEQKQKSVNVERDLFADIPSN--SQVSSENASFESLKTIK----------- 325

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I N ++ Q+     +T    S    T + DA  ++ + +  +  + K  
Sbjct: 326 ------HEYKLIDNQEEAQRICDFFKTKQILSLDTETTSTDAIEAELVGLCFAVEEHK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +     Q          + ++  K  +E+   LKIG NIKYD  VL  Y
Sbjct: 378 ------AFYVAIPNDRKQ--------ALQYVNIFKSVYEDPSILKIGQNIKYDYEVLKNY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS-RKSSIPIDKIS 534
           G++++G   D ML  YVL      H++  +A+  L+Y     +E++ +  K    +  I+
Sbjct: 424 GVTLQGKMFDTMLAHYVLQP-ELRHNMDYMAETLLNYKTIHIEELIGAPGKHQKSMRDIA 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                E+  E++++ LQL  +L PKL    +  ++  ++ P+I V++ ME+ G+++D   
Sbjct: 483 PEDAYEYGAEDADITLQLRNVLEPKLKEVAMEALFWDIETPLIPVLADMELNGVRVDTAT 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653
           L   +   ++ +  LE +IY+ +GE FN++SPKQ+GDILF KL+      KTKTGQ+ T 
Sbjct: 543 LHDTAEIFTERMNRLERHIYEEAGETFNIASPKQVGDILFGKLQIMEKPKKTKTGQYVTN 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+ +    NPI+++IL  R L K+  TY ++LP  I+KRTQ +HT ++ A T TGRL
Sbjct: 603 EEVLQSLRA-KNPIVEDILAHRGLKKLLGTYVEALPKLIHKRTQHIHTSFNQALTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++++ G++IR+ F+  P     SADYSQIELRI+AH++    + + F  
Sbjct: 662 SSSDPNLQNIPVRSEDGKEIRKCFVPEPGCLFFSADYSQIELRIMAHLSGDENMIEAFRE 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+   I  V+P+ R+ AK  NF IIYGI+ + LA ++ I   EA   I+
Sbjct: 722 GFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYGITTYGLAQRMGIDNKEARMLIE 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +  Y+E+ K   RQ GY  T+FGRR +  +INS   ++R   ER AINAPIQ
Sbjct: 782 DYFTTFPKVKAYMEQAKEEARQKGYAVTLFGRRRYLPDINSKNGTVRGFAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GS ADI + AMI + +  +   + +KM+LQ+HDEL F V  EE     +I++  M+ AC 
Sbjct: 842 GSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFSVYPEEKERVEKIVLEEMQGAC- 900

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL  +    NNW E +
Sbjct: 901 ---QLKVPLTADAGWGNNWLEAH 920


>gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1]
 gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1]
          Length = 937

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/993 (33%), Positives = 526/993 (52%), Gaps = 73/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M     L LVDGSS++YRA++A P L R   G P      AI G  NM+  L    RK+ 
Sbjct: 1   MSNSKTLVLVDGSSYLYRAYHAMPDL-RAIPGDPASPATGAIRGMVNMMQAL----RKDV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A +   +FD    TFR+E+Y +YKA R  +P+ L  Q+  +       G   + + G E
Sbjct: 56  QADYAVCVFDASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVAMLGWKVVAVPGVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+IAT    A  +G  V + S DKDL QLV+    + DT+  +K D+  V  ++G+PP
Sbjct: 116 ADDVIATLAQTAAAQGIQVIVSSGDKDLSQLVNEHVTIIDTMNGKKRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             M+  QAL GD++DN+PG+  +G KTAA  L+E+G L+N++ NA+ IK     +N+ + 
Sbjct: 176 ALMIDYQALVGDTVDNVPGVTKVGPKTAAKWLEEFGTLDNLIANAAGIKG-VAGQNLRDA 234

Query: 237 AE--TARLSRKLVMLRTDVPIT------IPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
                  LSR+LV ++TD  ++        L+ + L + +   L  F +   F  L+  +
Sbjct: 235 IASGQLALSRQLVTMKTDCDLSAYIGGLPQLDAVTLAEPDSAALAPFYEKYGFKGLVRTL 294

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                   A         ++ +      +     +  +   Q   L              
Sbjct: 295 GAAAADVKAAKPGKAAKADSAQGGLFDADDAAATEVAVAAQQRDVL-------------- 340

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
                              YT I++   + +W+ K+E     +    TD++D   ++ + 
Sbjct: 341 -------------------YTTILSEAQLDEWLAKIEAAELTALDTETDSLDEMVARIVG 381

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           I+ S     +     +    +D+          +     ++L+ L+ + E+    K+G +
Sbjct: 382 ISFSVAVG-EAAYIPLRHEGMDVP---------EQLDLDKVLARLRPWLEDASRKKLGQH 431

Query: 469 IKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSR 524
           +KYD+ V   +GI++RG+  D ML SYVL++ R  H++ S+A + +     + +++    
Sbjct: 432 VKYDQHVFANHGITVRGYAHDTMLQSYVLEADR-PHNLTSLALRHVNRSGISYEDLCGKG 490

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQM 583
           KS IP  ++   +   ++ E+S+  L +   L P++ V   LLH+YE L+    + + ++
Sbjct: 491 KSQIPFAQVPVDKAAAYSCEDSDQTLDVHNTLWPRIQVHAGLLHIYE-LEMQTSEALFRI 549

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+ ID   L + S ++   +L LEE  Y+++G+ FNLSSPKQLG+I F KL  P   
Sbjct: 550 ERNGVSIDAGELARQSNDLGARILKLEEEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVK 609

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT TG   T  + LE++   D P+   +LE R LSK+K TY D L         RVHT Y
Sbjct: 610 KTATGARSTDEEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHY 668

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           + A  +TGRL+S +PNLQNIP++T  G+++R AF++P  K + SADYSQIELRI+AH++ 
Sbjct: 669 AQAVAVTGRLSSNDPNLQNIPVRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSG 728

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F+N LD+HR  AAE+FGV++++VS + RR+AK INF +IYG+S F LA  L I
Sbjct: 729 DEALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGI 788

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
               AA YI +YF R+PG+  Y+++T       GYVET+FGRR+   EIN      +   
Sbjct: 789 ETKAAAAYIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAA 848

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAAINAP+QG+AAD+ ++AM++V   L+  K    +++Q+HDELVFE+PE         
Sbjct: 849 ERAAINAPMQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPEAARDWVQAE 908

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           I   M        +L VPL   I   ++W++ +
Sbjct: 909 IPAIMAGVA----DLSVPLLAEIGFGSSWEKAH 937


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/990 (33%), Positives = 532/990 (53%), Gaps = 58/990 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + +  LFL+D  + I+R +YA     R    G+  +AI GF N    +++  R +    H
Sbjct: 3   EPKKRLFLIDAFALIFRGYYALIKNPRINSKGMDTSAIMGFMNSFLDVIKKERPD----H 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD      RNE++  YKANR + P+ +   +P +    +A  +P +  +G+EADD+
Sbjct: 59  LAVCFDKGGSAARNEMFEAYKANRDETPDGIKIAIPYIYKILEAMQVPIMVKEGYEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIPPE 177
           I T +  AEK G+   +++ DKD  QLVS    +Y  +     E   I  V K++ +   
Sbjct: 119 IGTLSKQAEKAGYTTFMVTPDKDFAQLVSENIFMYRPMFGGGYETWGIPQVQKRFEVENP 178

Query: 178 -KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++    + GD+ DNIPG+PG+G KTA   ++++G++E +L N  ++K  K +E ++  
Sbjct: 179 LQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIKQFGSMEGLLENTDQLKG-KMKEKVIAN 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           AE   LS+KL  +  DVP+    E   +   +   +    + LEF +L       +  +A
Sbjct: 238 AELGLLSKKLATIMLDVPVAFNAEDFEMSTPDVAAVTEIFEELEFRRLTTNFTKAFSVEA 297

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLE 353
              +       T      A +TE  +   I  +   QFS     T++  +    +K   +
Sbjct: 298 MASK------GTNHQDTPAKKTETKKAAPITNAGEGQFSLFGGDTTETATTSNSRKTIKD 351

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  +        ++Q L    S  F   T  ++   ++ + IA S 
Sbjct: 352 T----------EHFYQLVQPGMGTTLFIQNLMKQPSVCFDTETTGLNPLTAELVGIAFSW 401

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              K          +I            +    +EI+  L+ FFE     KIG N+KYD 
Sbjct: 402 EAGKG--------FYIAFPK--------EKEAAQEIIELLRPFFEATEIEKIGQNLKYDL 445

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSI 528
            VL +Y I ++G   D ML  Y+++     H++  +A+ +L+Y      + I K  K+  
Sbjct: 446 KVLRKYDIVVKGQLFDTMLAHYLINPDM-RHNMDILAETYLNYTPVSITELIGKKGKNQK 504

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  +  +   E+A+E++++ LQL      +L       ++  ++ P++ V++ ME  GI
Sbjct: 505 SMRDVPVADQTEYAVEDADITLQLKEHFSKELGEANTQKLFTDIEVPLLRVLAAMEAEGI 564

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
            +D+  L  +S ++  ++ SLE+NIY  +GE+FN++SPKQLG+ILF K+K      KTKT
Sbjct: 565 NLDKTFLNSLSDDLESDIASLEKNIYAEAGEEFNIASPKQLGEILFGKMKLVEKPKKTKT 624

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+  TA+D+      D+ II ++LE+R L+K+KSTY D+LP  +   TQRVHT Y    
Sbjct: 625 GQFS-TAEDVLSALAKDHKIIADVLEYRGLAKLKSTYVDALPLQVEPATQRVHTDYMQTV 683

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITP 766
             TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A +++   
Sbjct: 684 AATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENYVLLAADYSQIELRIIAALSQEET 743

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F+N  DIH   A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  + R 
Sbjct: 744 MMEAFKNGEDIHASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTSLSRG 803

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA + I  Y+  +P +  Y+ +  NF R NGYVETI GRR + + IN   + +R   ER 
Sbjct: 804 EAKELIDAYYETYPKLKHYMSEQVNFARDNGYVETIMGRRRYLNAINGSNAIVRGAAERN 863

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+NAPIQGSAADI + AMI++++ LE+    TKMLLQ+HDELVF+V ++E+     +I H
Sbjct: 864 AVNAPIQGSAADIIKIAMINIYRKLEEGNYKTKMLLQVHDELVFDVHKDELDEMKTMIKH 923

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME A L    + VPL V + +  NW E +
Sbjct: 924 EMENAYL----MDVPLDVEVGIGQNWLEAH 949


>gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330]
          Length = 925

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/990 (34%), Positives = 527/990 (53%), Gaps = 79/990 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDGSS++YRAFYA   LS   DG P NA+ G  NML +L    R E  A +
Sbjct: 1   MT-QKTLLLVDGSSYLYRAFYAMTHLS-APDGTPTNAVYGVLNMLKRL----RAEQSADY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+ +Y DYKA RP +P+ L PQ  ++       G   ++I G EADD+
Sbjct: 55  CAVVFDAKGKNFRHALYEDYKATRPPMPDELRPQADMLPDLVDLMGWKVLKISGVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +   V I + DKD+ QLVSP   L +T+K E +D + V+ K+G+ PE++ 
Sbjct: 115 IGTLAIAAAAQDMNVIISTGDKDMAQLVSPRITLVNTMKNEMLDHDGVVAKFGVKPEQIR 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DN+PG+   G KTAA  L EYG+L+ I+  A   K  K  EN+       
Sbjct: 175 DFLALMGDKVDNVPGVEKCGEKTAAKWLAEYGSLDEIMRRADEFKG-KIGENLRAALVQL 233

Query: 241 RLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS +LV ++TDV ++  L    + L  +  N  +L    + L F   +           
Sbjct: 234 PLSYELVTIKTDVDLSTDLPRGLDDLQRQAPNWAQLAPRFRELGFKTWLK---------- 283

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                               E E    T      F+ L  +  K   +  P+  F  + +
Sbjct: 284 --------------------EAEAQLSTGETGDLFAQLESEPPK---QPAPEITFAPKPE 320

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETI----GSASFKIITDTMDAFHSKPIAIAIS 412
           +         +Y  +   + +   V +L               T + +   ++ + I+++
Sbjct: 321 QF--------NYQSVTTAEQLADLVARLHVCMQNGSPIGLDTETTSREPMQAQLVGISVA 372

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               +          +I ++   +            + S L+ F E+E   KIG N+KYD
Sbjct: 373 LAAGE--------AFYIPVAHRFA----DAQLDWATVKSSLQPFLESESLGKIGQNLKYD 420

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSI 528
           + +     I ++G   D ML SY+++S  + H++  +A +WL     + + +       I
Sbjct: 421 QHIFKNQDIDLKGIVGDAMLASYIVESHLT-HNLDDLAARWLGLETISYESLCGKGAKEI 479

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
               +      ++A ++++  L++   LR ++   +L  +Y++++ P+  V+ +ME  G+
Sbjct: 480 SFADVDVQAATQYACQDADFALRIEQHLRTQMDAAQL-ALYQQMELPVAQVLFEMERAGV 538

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTK 646
           QID+  L Q SA +   LL LE+  Y+L+G+ FNL+SPKQL +ILF KL  P+    KT 
Sbjct: 539 QIDRAELAQQSATLGAELLQLEQQAYELAGQPFNLNSPKQLQEILFDKLGIPTKGVKKTA 598

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G   T    LE++   D P+ K IL+ R LSK+KSTY D L   I  +T RVHT Y+ A
Sbjct: 599 KGGLSTDESVLEKL-ADDYPLPKIILQTRSLSKLKSTYTDKLAEMILPQTGRVHTNYAQA 657

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
             +TGRLAS  PNLQNIPI+T+ G+++RRAF +P    ++SADYSQIELRI+AH++  T 
Sbjct: 658 VAITGRLASNNPNLQNIPIRTEQGRRVRRAFTAPQNCVIVSADYSQIELRIMAHLSGDTT 717

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F N+ D+HR  AAE+FG+  E ++ + RR+AKTINF +IYG+S + LA  L I   
Sbjct: 718 LQAAFHNNEDVHRRTAAEVFGMAPEHITSEQRRYAKTINFGLIYGMSEYGLAKSLGIDAM 777

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            A  +I+RYF R+ G+ +Y+++TK   +Q GYVET+FGRR++  +I++  +  R   ERA
Sbjct: 778 SAKMFIQRYFARYTGVADYMQRTKEQAQQLGYVETLFGRRLYLPDIHAKNAMTRAGAERA 837

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAP+QG+A+D+ +RAMISV   L    L +++++Q+HDELV EV + E+    + +  
Sbjct: 838 AINAPMQGTASDLIKRAMISVQDFLRQSSLHSRLVMQVHDELVLEVHDSELALIREKLPE 897

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M +  +    L VPL   + V  NW + +
Sbjct: 898 LMAQVGVGV--LNVPLLAEVGVGANWDDAH 925


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/987 (34%), Positives = 536/987 (54%), Gaps = 75/987 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + LFL+D  + IYR++YA     R    GL  + + GFCN L ++L   +     +
Sbjct: 1   MNIMDKLFLLDAYALIYRSYYAFMKAPRINSKGLNTSCVMGFCNTLNEILTKEK----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD+   TFR+E +P YKA R + PE +   +P+++   +A+ IP +++ GFEADD
Sbjct: 57  HIAVAFDH-GKTFRHEAFPAYKAQREETPEDIKLSVPIIKNILEAYHIPILQVDGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPP 176
           II T    A ++G    +++ DKD  QLV     ++        EK+ ++ + +K+ I  
Sbjct: 116 IIGTVALKAGEKGMETYMLTPDKDYAQLVRNNVFMFRPRHGGGYEKLGVQEIEEKYSITS 175

Query: 177 E-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++ L AL GDS DN PG PG+G KTA  L+ E+G++E ++ N+S++K  K RE +  
Sbjct: 176 PLQVIDLLALMGDSADNFPGCPGVGEKTAIKLINEFGSVEGLIENSSQVKG-KLREKVEG 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E  R+S+ L  +RTDVP+ I +E L   + +  +L      LEF    NRV       
Sbjct: 235 AVEDIRMSKFLATIRTDVPVEIRMEDLKRVEPDNTKLDEIFTELEFKSFANRVL------ 288

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                          NK   ++T+   +  +   Q +         +S++ P+    E +
Sbjct: 289 ---------------NKPKKVQTKAIGELDLFGVQLA---------DSKEEPKNASFETI 324

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +  S       SY  I    D ++    L T    S    T +  A  ++ + ++ +  +
Sbjct: 325 KTTSH------SYKLIDTEVDAKKLYDYLLTFNILSLDTETTSTTAIDAELVGLSFAVKE 378

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           ++          ++ +  +  +          +I++  K  +EN   LK+G NIKYD  V
Sbjct: 379 KE--------AFYVAIPANREE--------ALKIVNIFKPLYENPEILKVGQNIKYDYEV 422

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YGI ++G   D ML  Y++      H++  +A+ +L+Y     +E++    K+   +
Sbjct: 423 LINYGIEIQGKMFDTMLAHYLIQP-ELYHNMDYLAEVFLNYQTIHIEELIGPKGKNQKSM 481

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++ S + E+A E++++ L+L  +L  KL       ++  ++ P++ V++ ME+TG+ I
Sbjct: 482 RDLAPSDIYEYAAEDADITLRLKNVLESKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCI 541

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D D LK+ S  ++  L  +E +IY+L+GE FN++SP+Q+G+ILF K+K      KTKTGQ
Sbjct: 542 DTDTLKETSENLTNRLNEIEHHIYELAGESFNIASPRQVGEILFGKMKIVEKPKKTKTGQ 601

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ + L+Q+    +PII  IL +R L K+  TY D+LP  IN RT  +H  ++ A T 
Sbjct: 602 YVTSEEVLQQLRS-KSPIIDEILNYRGLKKLLGTYIDALPKLINSRTGHIHASFNQAITA 660

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++ D G++IRR FI  P     SADYSQIELRI+AH+++   + +
Sbjct: 661 TGRLSSSDPNLQNIPVRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMVE 720

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   AA+I+  +I++V+   R+ AKT NF IIYGI+ F LA ++ I   EA 
Sbjct: 721 AFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIYGITTFGLAQRMNIENREAK 780

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I+ YF  FPG+  Y+EK K   R+ GY ET+F RR +  +INS   ++R   ER AIN
Sbjct: 781 QIIEDYFRTFPGVQAYMEKAKEMAREKGYAETLFHRRRYLPDINSKNGTVRGFAERNAIN 840

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGS ADI + AMI +        + +KM++Q+HDEL F V  EE     +I+V  M+
Sbjct: 841 APIQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELNFSVYPEEKEKVEKIVVEEMQ 900

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A      L VPL  +    NNW E +
Sbjct: 901 NA----YQLSVPLVADAGWGNNWLEAH 923


>gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44]
 gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44]
          Length = 937

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/993 (33%), Positives = 524/993 (52%), Gaps = 73/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M     L LVDGSS++YRA++A P L R   G P      AI G  NM+  L    RK+ 
Sbjct: 1   MSNSKTLVLVDGSSYLYRAYHAMPDL-RAIPGDPASPATGAIRGMVNMMQAL----RKDV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A +   +FD    TFR+E+Y +YKA R  +P+ L  Q+  +    Q  G   + + G E
Sbjct: 56  QADYAVCVFDASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVQLLGWKVVAVPGVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+IAT    A  +G  V + S DKDL QLV+    + DT+  +K D+  V  ++G+PP
Sbjct: 116 ADDVIATLAQTAAAQGIQVIVSSGDKDLSQLVNEHVTIIDTMNGKKRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             M+  QAL GD++DN+PG+  +G KTAA  L+E+G+L+N++  A+ IK     +N+ + 
Sbjct: 176 ALMIDYQALVGDTVDNVPGVTKVGPKTAAKWLEEHGSLDNLIARAADIKG-VAGQNLRDA 234

Query: 237 AE--TARLSRKLVMLRTDVPIT------IPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
                  LSR+LV ++TD  ++        L+ + L + +   L  F +   F  L   +
Sbjct: 235 IASGQLALSRQLVTMKTDCDLSSYISGLPQLDAITLAEPDSAALAPFYEKYGFKGLARTL 294

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                   A         ++ +      +     +  +   Q   L              
Sbjct: 295 GAAAAEAKAAKPGKAAKTDSAQGGLFDADDAAATEVAVTAQQRDVL-------------- 340

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
                              YT I++   + +W+ K+      +    TD++D   ++ + 
Sbjct: 341 -------------------YTTILSEAQLDEWLAKISAAELTALDTETDSLDEMVARIVG 381

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           I+ S     +     +    +D+      D          +L+ LK + E+    K+G +
Sbjct: 382 ISFSVAVG-EAAYIPLRHEGMDVPEQLDMDM---------VLARLKPWLEDAGKKKLGQH 431

Query: 469 IKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSR 524
           +KYD+ V   +GI++RG+  D ML SYVL++ R  H++ S+A + +     + +++    
Sbjct: 432 VKYDQHVFANHGITVRGYAHDTMLQSYVLEADR-PHNLTSLALRHVSRSGISYEDLCGKG 490

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQM 583
           K+ IP  ++S  +   ++ E+S+  L +   L P++     LLH+YE L+    + + ++
Sbjct: 491 KNQIPFAQVSVDKAAAYSCEDSDQTLDVHNTLWPRIQAHAGLLHIYE-LEMQTSEALFRI 549

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+ ID   L + S ++   +L LEE  Y+++G+ FNLSSPKQLG+I F KL  P   
Sbjct: 550 ERNGVSIDAGELARQSNDLGARILKLEEEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVK 609

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT TG   T  + LE++   D P+   +LE R LSK+K TY D L         RVHT Y
Sbjct: 610 KTATGARSTDEEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHY 668

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           + A  +TGRL+S +PNLQNIP++T  G+++R AF++P  K + SADYSQIELRI+AH++ 
Sbjct: 669 AQAVAVTGRLSSNDPNLQNIPVRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSG 728

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F+N LD+HR  AAE+FGV++++VS + RR+AK INF +IYG+S F LA  L I
Sbjct: 729 DEALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGI 788

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
               AA YI +YF R+PG+  Y+++T       GYVET+FGRR+   EIN      +   
Sbjct: 789 ETKAAAAYIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAA 848

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAAINAP+QG+AAD+ ++AM++V   L+  K    +++Q+HDELVFE+PE         
Sbjct: 849 ERAAINAPMQGTAADLIKKAMVAVQARLDTEKPEVLVIMQVHDELVFELPESARDWVQAE 908

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           I   M        +L VPL   I   ++W++ +
Sbjct: 909 IPAIMAGVA----DLSVPLLAEIGFGSSWEKAH 937


>gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
 gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
          Length = 935

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/991 (35%), Positives = 545/991 (54%), Gaps = 74/991 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  LFL+DG + +YRA +A    PL++ K  G+  +AI GF   LW L++  +     +
Sbjct: 2   SDKKLFLLDGHALVYRAHFAFITKPLVNSK--GVNTSAINGFTRQLWDLMRTEK----PT 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD    TFR+++Y  YKANR + P+ +   +P ++   +A  IP + +QG+EADD
Sbjct: 56  HIAVAFDPHGPTFRHDMYEPYKANREEQPQDISIAIPWIKKIIEAMHIPIVMVQGYEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           +I T    AEKEG+ V +++ DKD  QLVS    +Y   ++    E + ++ V + WGI 
Sbjct: 116 VIGTLAKQAEKEGYTVYMVTPDKDYGQLVSENIFMYKPSRQGNGIEIMGVKEVCENWGIK 175

Query: 176 P-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             ++++ L  L GD++DNIPGIPG+G KTAA LL  +  +E ++ N + +K  K +E + 
Sbjct: 176 RVDQVIDLLGLMGDAVDNIPGIPGVGEKTAAKLLDRFDTIEGVIANVNELKG-KEKERVE 234

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           +YAE A LS+KL ++ T VPI    +  I++  N   L    K LEF  L  ++      
Sbjct: 235 QYAEQAMLSKKLAIIETQVPIQFNADQYIIDPMNREALSEIFKELEFRSLATQILG---- 290

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                 E E    T     Q S   D    I    TPQK     
Sbjct: 291 ----------------------EGETRPSTPGPGQQGSLFGDTEPAI---YTPQKGANLT 325

Query: 355 LQKLSQYPINN--DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
              +++  I+N    Y  + + + + +   +L       F   T  ++   ++ + ++ +
Sbjct: 326 AHSVAEKTIDNTPHEYHLVNSPEAMHKLAAELAQQSEFCFDTETTHVEPTQAELVGMSFA 385

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               +          ++ +               + ++   +   ENE  LKI  N+KYD
Sbjct: 386 YKSGE--------AYYVPVPAGKEN--------AQAVVEIFRPVLENEKILKIAQNLKYD 429

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
            +V   YG+ +RG + D M+  Y+L+     H +  +A+ +LSY+       I K  K  
Sbjct: 430 AIVFKWYGVEVRGPYFDTMVAHYLLEP-EMRHGMDYLAETYLSYSPISIEMLIGKKGKDQ 488

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           + + +I   +V ++A E++++ LQL  L  PKL    +  +++ ++ P+I V++ +E  G
Sbjct: 489 LNMSQIDLEKVTDYAAEDADITLQLKELFAPKLEEGGVQELFDTIECPLIKVLADLEYEG 548

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTK 646
           I+ID D L   S E+   + +LE++IY+ +G KFN+ SPKQ+GD+LF +LK P  GAKTK
Sbjct: 549 IRIDSDYLDVYSKELEIQIQTLEQSIYEQAGVKFNIGSPKQVGDLLFERLKVPYKGAKTK 608

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ+ T    L ++   + PII+ IL +R L+K+KSTY D+LP  +N RT R+H+ ++ A
Sbjct: 609 TGQYSTDEDKLLEL-APEFPIIQTILNFRGLAKLKSTYVDALPKMVNPRTGRIHSSFNQA 667

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKIT 765
              TGRL+S  PNLQNIP++T  G K+RRAFI       L+SADYSQIELR++A I+   
Sbjct: 668 LAATGRLSSNNPNLQNIPVRTPEGAKVRRAFIPRDDQHTLLSADYSQIELRLIADISGDV 727

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            + + F+N+ DIH   AA++F V  + V+ + R  AKT+NFSI+YG     L+ QL I R
Sbjct: 728 AMLEAFQNNQDIHTATAAKVFNVPFDLVTREQRYQAKTVNFSILYGAGATNLSRQLSIKR 787

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +EA + I  YF  + G+  Y+       R+NGYV T+ GRR +  EINS  S  R+  ER
Sbjct: 788 TEAKELIDAYFALYSGLKGYMVTVVEDARKNGYVTTLMGRRRYLREINSKSSLERSNAER 847

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N P+QGSAAD+ + AM+++H++L +  L TKM+LQ+HDELVF+VP EE+     IIV
Sbjct: 848 VAVNTPVQGSAADMIKVAMVNIHQALLEQGLKTKMILQVHDELVFDVPNEELEIVKPIIV 907

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A      L+VP++V +    NW E +
Sbjct: 908 EKMRSALP---KLKVPIEVGLGTGQNWLEAH 935


>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
 gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
          Length = 928

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/988 (34%), Positives = 534/988 (54%), Gaps = 72/988 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M++   LFL+D  + IYRA+YA     R    GL  +AI GF N L ++L         +
Sbjct: 1   MEQAKKLFLLDAYALIYRAYYAFIKNPRVNSKGLNTSAILGFVNTLEEVLNKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  + FD    TFR+E + DYKA R   PE +   +P+++   +A+ IP +E+QG+EADD
Sbjct: 57  HIGIAFDPAGPTFRHEAFEDYKAQREATPEDIKIAVPIIKDIIRAYKIPILEVQGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           +I T    A ++  +  +++ DKD  QLV     +Y         E +  + VI+K+ + 
Sbjct: 117 VIGTLAKQANEKEISTYMMTPDKDYAQLVDKYVYMYRPKYGDKEFEILGPQEVIEKYDLE 176

Query: 176 PE-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            + +++ L  L GDS DNIPG PG+G KTA  LL+E+G++EN++ N  ++K    ++ + 
Sbjct: 177 NQSQIIDLLGLMGDSADNIPGCPGVGIKTAQKLLKEFGSIENLIENTDKLKGA-LKKKVE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E  + S+ L  ++ DVPI + L+ L+ E+ +  ++    + LEF  L+ RV    D 
Sbjct: 236 ANIEQIKFSKFLATIKVDVPIKLELDKLVREEMDKDKVREIFEELEFRTLLERVIKETDS 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
               I+                         I+   FS  +  T     E T   L   +
Sbjct: 296 PTLQIQT----------------------GPIQGDLFSEFATNTQDTQKESTEIALENNK 333

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            +           Y  I N  DI++  +KL      +    T  ++A  ++ + I+ S  
Sbjct: 334 KE-----------YHLIDNEDDIEELSKKLMPFKEIALDTETTGLEAMEAEIVGISFSVK 382

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                   K E  +I                TK+ L+ +K   EN+  LKIG NIKYD L
Sbjct: 383 --------KNEAYYIPFPK--------DQEETKKRLNIIKPLLENKKSLKIGQNIKYDLL 426

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIP 529
           +L  YGI + G   D M+  YV+      H++  +A+ +L++     ++++    K+   
Sbjct: 427 ILKNYGIEVVGKLFDTMIAHYVVQP-ELRHNMDYLAEIYLNHITIPIEDLIGPKGKNQKS 485

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           + ++S   V  +A E++++  QL   +   L   +   ++  ++ P++ V++ ME TG+ 
Sbjct: 486 MRELSPEDVYIYACEDADITFQLKNAIEKDLKENQAEELFYTIEMPLVPVLTDMEYTGVL 545

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTG 648
           +D+  LK +S + +  L+++EE I+ L+   FN+SSPKQ+G+ILF KLK      KTKTG
Sbjct: 546 LDKKALKSLSKDFTDRLITIEEEIHKLADNDFNVSSPKQVGEILFDKLKIDEKAKKTKTG 605

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+ + L       +PI++ IL++R L K+ STY D+LP  INK+T ++HT ++   T
Sbjct: 606 QYVTSEEVLLSYK-DKHPIVEKILDYRGLKKLLSTYVDALPKLINKKTGKIHTSFNQTVT 664

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S  PNLQNIPI+   G++IR+AFI        SADYSQIELRI+AH++    + 
Sbjct: 665 ATGRLSSSNPNLQNIPIRDSDGKEIRKAFIPDQDSLFFSADYSQIELRIMAHLSHDNNMM 724

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F +  DIH   AA+++  +I  ++   RR AKT NF IIYGIS F LA ++++ R EA
Sbjct: 725 EAFLHGDDIHAATAAKVYKQDINTITSDQRRKAKTANFGIIYGISVFGLAERMQVERKEA 784

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I+ YF  +P + EY++++    R+ GYVETIF R+ +  +INS  + +R  +ER AI
Sbjct: 785 KELIEGYFETYPQVKEYMDQSIVEAREKGYVETIFNRKRYLPDINSRNAVVRGFSERNAI 844

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AM+++HK  ++ KL +KM+LQ+HDEL F V   E     QI++  M
Sbjct: 845 NAPIQGSAADIIKVAMVNIHKRFKEEKLLSKMILQVHDELNFTVIPSEKEKVQQIVIQEM 904

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A      L VPLK +     NW E +
Sbjct: 905 ENA----YKLSVPLKADFGWGENWLEAH 928


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/985 (35%), Positives = 548/985 (55%), Gaps = 69/985 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+DG + IYRA++A     R   +GL   AI GF N L ++L+N +     +H AV
Sbjct: 2   KKLFLLDGMALIYRAYFALSKTPRLTSNGLNTGAIMGFTNTLLEVLKNQK----PTHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A T R+  +  YKA+R K+PE L   +P +    + F IP I   G+EADDII T
Sbjct: 58  VFDTDAPTNRHIEFESYKAHREKMPEDLSASIPYIFRLIEGFNIPIITKDGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI-PPEK 178
                E++GF V  ++ DKD  QLVS    +Y   +     E   +  ++ KW I    +
Sbjct: 118 LAKEGEQKGFTVYCMTPDKDFGQLVSDNIFIYKPARMGNGAETQGVPEILAKWEISDVSQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +  L GD++DNIPGIPGIG KTA  L+Q++G++E I+ N+ ++K  K +EN+  +AE
Sbjct: 178 VIDILGLWGDAVDNIPGIPGIGEKTAKKLVQDFGSVEGIIANSDKLKG-KMKENVENFAE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS++L  ++ DVPI    + L+LED N   L      LEF  L  RV          
Sbjct: 237 QGLLSKRLATIQLDVPIEFDEKSLLLEDPNKEVLEPLFAELEFRTLGKRVF--------- 287

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                        +  ++     ++T+ +   FS+ ++ T+    E  P           
Sbjct: 288 ------------GEDFSVADATGKNTSGQMDLFSTATNDTAPQQEELPPVASN------- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  + +++  Q+  ++L    S  F   T  +DA  +  + ++ +    K 
Sbjct: 329 -NIDNTAHEYILVDSSEAQQKLAKELAAQKSFCFDTETTGLDALVADIVGLSFAIEKGK- 386

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++       Q          EI++  K   E+    KIG NIKYD L+L R
Sbjct: 387 -------AYYVPTPDSREQ--------ALEIINIFKPILEDPAIQKIGQNIKYDILLLSR 431

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPIDKI 533
           Y + ++G   D ML  Y++D   + H +  +A+ +L Y    I K      K    +  +
Sbjct: 432 YDVKVKGALFDTMLAHYLIDPD-TRHGMDVLAENYLGYIPVSITKLIGEKGKKQGNMRDV 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               ++E+A E++++ LQL     P L     L + + ++ P++ V+S++E  G++ID D
Sbjct: 491 EIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVD 550

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKT 652
           +L   S  I +++ +LE +IY+ +G KFN++SPKQLG++LF KL+  P   KTKTGQ+KT
Sbjct: 551 VLSVFSKTIEEDVRNLEASIYEKAGVKFNIASPKQLGEVLFDKLQLDPKAKKTKTGQYKT 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
               L  +    + I+++IL++RQL K+KSTY D+LP+ IN  T  +HT Y+ A   TGR
Sbjct: 611 GEDVLLTL-ANKSDIVQDILDFRQLQKLKSTYVDALPSLINPNTGLIHTSYNQAVAATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIPI+T+ G+++R+AFI       ++SADYSQIELR++A +++   + + F
Sbjct: 670 LSSTNPNLQNIPIRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANMLEAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +   DIHR  AA+++G+ +++VS   RR+AK +NF IIYG S F L+  L IPR EAAD 
Sbjct: 730 QKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREAADI 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I +YF ++ GI +Y+ K     ++NG+VETI  RR +  +INS   ++R   ER AINAP
Sbjct: 790 IDQYFQQYSGIRDYMSKAIASAKENGFVETILKRRRYLRDINSANMTVRGFAERNAINAP 849

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AM+ + + +E+ +LA KM++Q+HDELVF+VP +E+     +I + M+ A
Sbjct: 850 IQGSAADMIKVAMLRIQEDIEEQQLAGKMIMQVHDELVFDVPLDEVEKFKTLIQNRMKTA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               I ++VP++V I    NW E +
Sbjct: 910 ----IPMQVPIEVEIGQGKNWLEAH 930


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score =  892 bits (2304), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/988 (35%), Positives = 539/988 (54%), Gaps = 63/988 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++ + LFL+D  + IYRA +A     R    GL    + GF N L ++L         +H
Sbjct: 4   KQAHKLFLLDAMALIYRAHFAFSKNPRINSKGLNTGVMLGFTNTLLEVLDKEN----PTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A TFR+  Y  YKANR + PE +   +P V+   +AF IP +E+ GFEADDI
Sbjct: 60  IGVAFDTHAPTFRHIQYEPYKANRQEQPEDIGVAIPWVKEIVKAFNIPILEMDGFEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPP 176
           I T    AE E F V +++ DKD  QLV     LY         E +  + + +KW I  
Sbjct: 120 IGTLAKQAEAENFTVYMMTPDKDYGQLVDDHIFLYKPAFMGKGIEVMGPKQICEKWDIER 179

Query: 177 -EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            ++++ +  L GDS+DNIPGIPGIG KTA  LL++YG++E ++ N   +K  K++EN++ 
Sbjct: 180 VDQVIDMLGLMGDSVDNIPGIPGIGQKTAVKLLKQYGSVEELIKNTDDLKG-KQKENVIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           +AE   LS++L  ++ DVP+    E L  +  N   L +    LEF  L +R+       
Sbjct: 239 FAEQGILSKQLATIKIDVPVNFVEEELKYDGFNEETLKTIFAELEFRTLASRIFKDGKTK 298

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            A I+                          +   F      TS    E   + +    +
Sbjct: 299 KAAIK-----------------------GNDQLGLFGDSKATTSTPTIEFEEETVNAAPI 335

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            +          Y KI   + I++ V  L       F   T +++A  ++ + I+ + L 
Sbjct: 336 PEHKNILTTAHQYHKIAGPEAIEELVSYLMLQDQLCFDTETTSVNAMEAELVGISFAYLS 395

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          +I      ++        T +IL  LK  F+NE  LKIG NIKYD L+
Sbjct: 396 GE--------AYYIPCPADRAE--------TDQILEQLKPVFQNEKILKIGQNIKYDLLI 439

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRKSSIPI 530
           L  Y + ++G   D ML  Y+++     H +  +A+++L+Y      + I K  K+   +
Sbjct: 440 LKNYDVEVKGKLYDTMLAHYLIEP-EGKHSMDWLAEQYLNYQPVSITELIGKKGKNQGNM 498

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +   QV E+A E++++ LQL   L P L    L  ++  ++ P+I+V+++ME  GI+I
Sbjct: 499 RDVDVDQVTEYASEDADITLQLKEKLDPFLKENLLEKLFYEVENPLINVLTEMEFEGIRI 558

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D   L ++S  + K    +E  +Y+++G +FNL+SPKQLGD+LF KLK  P   KTKTGQ
Sbjct: 559 DTKSLAEMSISLEKESKEIENKVYEIAGVRFNLASPKQLGDVLFEKLKLDPKAKKTKTGQ 618

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  T +++      ++ I + IL++RQ+ K+KSTY D+LP  IN +T ++HT Y+     
Sbjct: 619 Y-ATGEEILSKLANEHEIARAILDFRQMVKLKSTYVDALPTMINSKTGKIHTTYNQFVAA 677

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S+ PNLQNIPI+T+ G++IR+AF+       L++ADYSQIELRI+A  +    + 
Sbjct: 678 TGRLSSINPNLQNIPIRTERGREIRKAFVPRDENHILLAADYSQIELRIMAAFSGDESMI 737

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+N  DIH   AA+IF V +E+V+  MRR AKT NF IIYGIS F L+ +L I R+EA
Sbjct: 738 EAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANFGIIYGISAFGLSQRLSISRTEA 797

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF  FP + EY+++     R + YVET+ GRR +  +INS  +++R   ER AI
Sbjct: 798 KEIIDAYFKEFPAVKEYMDRAIEKARNDEYVETLLGRRRYLRDINSRNATMRGFAERNAI 857

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAAD+ + AMI VH  ++   L +KM+LQ+HDELVF+  ++E+    + I   M
Sbjct: 858 NAPIQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDELVFDAHKDEVEILKKNIPELM 917

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
             A    I + VP++V +   ++W + +
Sbjct: 918 SNA----IKMDVPVEVEVGTGDDWLQAH 941


>gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1]
 gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1]
          Length = 923

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/979 (35%), Positives = 527/979 (53%), Gaps = 66/979 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+         + A + 
Sbjct: 3   KLVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVI 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+ +  +YK +RP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDALDCEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-HVIKKWGIPPEKMVCLQA 184
             A  +G AVTI + DKD  QLV P   L +T+   ++D    VI K+G+ P++++   A
Sbjct: 117 LAAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DN+PG+   G KTAA  L EYG+L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKG-KIGDNLRIVLPRLLLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L+ ++TDV +    + L L + +   L  F +   FT+ +  +      D  ++   V 
Sbjct: 236 ALITIKTDVVLEKRPQDLALRERDTEALRDFYRRYGFTQALKEL------DGGSVAVTVA 289

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           +      +        D    ++ +   S   +                           
Sbjct: 290 EQEPGRRRNAGFHVAPDASVAMEINPALSAPGE--------------------------- 322

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I   + +Q W+ +L   G  +    TD++D   +  I ++ ++ +         
Sbjct: 323 ---YETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFAS-EVGCAAYLPF 378

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +    V   +                    E+    K+G + KYD  VL RYGI + 
Sbjct: 379 GHDYPGAPVQLDRGQALALLQPLL---------EDPAVRKVGQHGKYDMHVLRRYGIVLA 429

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL SG + HD+ ++A++ L Y      +++      IP   +   +  +
Sbjct: 430 GYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEATQ 489

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L PKL+ E +L  VY  ++ P++ V+ ++E  G+QID + L + S
Sbjct: 490 YAAEDADITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQS 549

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++S+ ++  ++   DL+G  FNL SPKQL  +LF +LK P   KT  GQ   T ++  +
Sbjct: 550 ADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPS-TNEEALE 608

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K+++TY + LP  I+  T RVHT Y  A   TGRL+S +PN
Sbjct: 609 AIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN 668

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+TD G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+ +D+H 
Sbjct: 669 LQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHC 728

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            +AAE+FG  I++V+P  RR AK INF +IYG+S F LA QL I R EA DYI  YF RF
Sbjct: 729 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ +++E T+   R  GYVET+FGRR++ + I S   + R   ERAAINAP+QG+AADI
Sbjct: 789 AGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848

Query: 900 TRRAMISVHKSL--EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
            +RAM++V   L    H+    M+LQ+HDELVFE  E  + T    +   M  A      
Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAAA----Q 904

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           LRVPL V++ V ++W E +
Sbjct: 905 LRVPLVVDVGVGHHWDEAH 923


>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
 gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
          Length = 893

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/980 (34%), Positives = 521/980 (53%), Gaps = 91/980 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  ++ L+LVDGSS+IYRA+YA   LS    G P N I GF  ML KLL+  +      H
Sbjct: 1   MSHDDTLYLVDGSSYIYRAYYAIRHLS-SPTGHPTNTIYGFTQMLLKLLKEHQPR----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR E+YPDYKANR  +P+ L  Q+  +R   +AF IPA+E+ GFEADDI
Sbjct: 56  VAVVFDVGRETFRTELYPDYKANRAALPDDLRVQMGPIRDLVRAFNIPALELAGFEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I          G  V I++ DKDLMQ+V+    L DT+KE++  I  VI+++G+ P  + 
Sbjct: 116 IGCLAARFSATGGRVVIVTGDKDLMQIVTERVTLLDTMKEKRSAITDVIERFGVEPRLVT 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GD+ DNIPG+PGIG KTA  L++EYG+L+ +L  AS +K K             
Sbjct: 176 DILGLAGDASDNIPGVPGIGEKTAMKLIREYGSLDQLLERASEVKGK------------- 222

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      NG +L  F        L++R   T  CD     
Sbjct: 223 ---------------------------NGEKLREF----RDQALLSRRLATIRCDV---- 247

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+ +++    ++    E     +T  +   F++L  + +  ++                 
Sbjct: 248 PIQVELEELASQEPDREA---LNTLFRLYGFTTLIKELTGRST----------------- 287

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             ++++ Y  +   +++++ V  LE     +  + T ++D   ++ + ++ S  D     
Sbjct: 288 --LSSEGYCTVTAQEELEELVHALERSEEFAIDLETTSLDPRDAEIVGLSFSFRDH---- 341

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               +  +I +   +             +L  L+   E+    KIG NIK+D  VL   G
Sbjct: 342 ----QAWYIPVGHTSDAGLQPGQLPRDLVLERLRPQLESPSPTKIGQNIKFDMQVLATNG 397

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           +S+ G   D ML SYVL+  R  H + ++A + L +      E+  S K+     ++   
Sbjct: 398 VSLSGIRFDTMLASYVLNPSRQGHGLDALALEHLGHRMISYAEVTGSGKTQKNFSQVEIE 457

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +A E+++    L     P L    +  ++ R++ P++ +++ ME  G+ +D  LL 
Sbjct: 458 TASRYACEDADATWLLHRKFSPLLAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLA 517

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S + S  + +LE  I+ L+G  FNL+SPKQLG++LF +L+  +G KTK     +T  +
Sbjct: 518 DLSRDFSSRMATLEGRIFQLAGTTFNLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNE 577

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           +      ++ I + IL++R LSK+KSTY+D+LP  ++ RT RVHT Y+   T TGRL+S 
Sbjct: 578 VLSSLAEEHEIARLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVTSTGRLSSS 637

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI++D G+ IR AFI+PP   +ISADYSQIELR+LAH++      Q FE+  D
Sbjct: 638 DPNLQNIPIRSDEGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDPVFCQAFEHDED 697

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+E+FG+  E V+ +MRR AKTINF IIYG   F LA QL I R  A ++I  Y 
Sbjct: 698 IHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQGSFSLARQLGIARKTAEEFISAYK 757

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R      +++       + G+V TI GRR+   +I S   +IR   +R AIN PIQGSA
Sbjct: 758 ERHAKAVGFLDDCIRQAEEQGFVTTILGRRLPIADITSTNGNIRAFAQRNAINYPIQGSA 817

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI V   +    L +++++Q+HDELVFEV E+E+     ++   M +A    +
Sbjct: 818 ADIIKSAMIRVDGRIRSEGLKSRLIMQVHDELVFEVREDELLAMELLVEEEMSRA----V 873

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LR+PLKV+I    NW E +
Sbjct: 874 ELRIPLKVDISHGVNWSEAH 893


>gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)]
          Length = 1018

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1011 (32%), Positives = 540/1011 (53%), Gaps = 73/1011 (7%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            ++     LVDGS +++R ++A P       GL  NAI G  N L K+++        +H 
Sbjct: 45   KERPPFILVDGSYYLFRTYHALPKTMMNSQGLTTNAIRGTLNALLKVMRR----YNPTHM 100

Query: 62   AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            AV FD  + TFR+ +  +YKANRPK+   L  Q+P +    +A GIP + I+G EADDII
Sbjct: 101  AVCFDTKSPTFRHAMSEEYKANRPKMDPELAEQIPYIHRLVRALGIPLLRIEGAEADDII 160

Query: 122  ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
             T T+ A +EG  V I S DKD+MQL++    L D+   + +D++ V  K+GI P +M+ 
Sbjct: 161  GTLTHRAVQEGHHVVISSGDKDMMQLINDCVILEDSFVGKVVDVQGVEDKYGIKPNQMID 220

Query: 182  LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            L  L GD+ D I GIP +G KTA   L +Y  ++NI+ NA +IK  K  E ++E+A+   
Sbjct: 221  LLTLMGDASDGIKGIPSVGQKTAVKWLNQYQTVDNIVANAHQIKG-KVGEKLVEFADNIP 279

Query: 242  LSRKLVMLRTDVPITIPLEHLIL---EDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              R+L  + T++ I    E L +      +   L      LEF   +  +          
Sbjct: 280  RDRQLATIVTNLEIGQDWEDLRINTDPTAHIEELRELYSELEFKNELASLDH-------P 332

Query: 299  IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
              P    +++  +     E++     T++  + +S+                    ++ +
Sbjct: 333  NHPANSSVDSVADSKADAESQAQVAKTLQNQKQTSI--------------------IEHI 372

Query: 359  SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                 ++ ++  +++   +     +L++    +    T ++D   ++ + ++ S    + 
Sbjct: 373  KNSKTHDKAWHTVLDENMLDTLFHQLQSAKHFAVDTETTSIDWREAEIVGLSFSVQAHEA 432

Query: 419  DTSFKVETIFID-----------------LSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
                     + +                 ++         K      +L+ LK   EN  
Sbjct: 433  YYVPLAHVDYSEPQKKAKNKKEEAEQAELVANAEVDPLIAKQLDRDMVLTKLKPILENPE 492

Query: 462  FLKIGHNIKYDKLVLHRYGISM----RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS-- 514
              KIG ++KYD  VL +YGI +    + +E D ML SYVL++  + H +  +A+ +L   
Sbjct: 493  IGKIGQHLKYDAHVLRKYGIELNTSPKNWEMDTMLASYVLNAAATRHSMDDLARHYLHTQ 552

Query: 515  -YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERL 572
              + +++       +  DK++ +   ++A E++++  QL+ L + +L  + +   +   L
Sbjct: 553  TISFEDVAGKGAKQVTFDKVAINIASDYACEDADITYQLFELFQDRLKDDTVNQRLLHEL 612

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            + P+  ++ QME  GI I +  L ++S    + ++ LE+  Y  +GE+FNL SPKQLG++
Sbjct: 613  EIPVAQILCQMESEGIMIKRSFLNELSERFDEEIIELEKQAYVEAGEEFNLGSPKQLGEV 672

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF KL    G KTK+GQ+ T       ++  D+P+ +  LE+R L+K+K+TY D+L    
Sbjct: 673  LFDKLGVIGGKKTKSGQYSTGEAV---LSKIDHPLAEIALEYRSLAKLKNTYTDALDAVA 729

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            +K T RVHT Y  A T TGRL+S +PNLQNIPI+T  G+ IR+AFI+P  + L++ADYSQ
Sbjct: 730  DKDTDRVHTSYHQALTSTGRLSSTDPNLQNIPIRTKTGRLIRQAFIAPEGRVLLAADYSQ 789

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR++AH +    L + F   LDIH   AAE+ G ++++V+P  RR+AK INF ++YG+
Sbjct: 790  IELRLMAHFSGDANLTKAFNEGLDIHTATAAEVLGKSVDEVTPTERRNAKAINFGLLYGM 849

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA QL++ R EA DYI +YF R+PG+  Y++ T++     GY+ETI GR+++  +I
Sbjct: 850  SAFGLAKQLQMSRGEAQDYIDQYFKRYPGVRRYMQDTRDNAVDKGYIETILGRKLYTPDI 909

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            NS    +R   ERAAINAP+QGSAAD+ + AMI+V K L       KMLLQ+HDELVFEV
Sbjct: 910  NSNNQMVRRGAERAAINAPLQGSAADLIKLAMIAVDKVLPKQN--AKMLLQVHDELVFEV 967

Query: 933  PEEEITTASQIIVHSMEKA-------CLPKINLRVPLKVNIKVSNNWQEEN 976
              ++     ++I ++M+             ++  VPL V   V +NW E +
Sbjct: 968  DSDKADEIGELIKNAMQNVLSDTAKDMGWDVDFAVPLLVETGVGDNWDEAH 1018


>gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259]
 gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259]
          Length = 907

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/980 (34%), Positives = 523/980 (53%), Gaps = 85/980 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q    L LVDGSS++YRAF+A P L R   G P +AI G   ML +L    RK+  A + 
Sbjct: 8   QPGKTLLLVDGSSYLYRAFHALPDL-RNAAGEPTSAIKGVLAMLHRL----RKDYAADYI 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A +FD    TFR+++YP YKANRP +P+ L  Q+  +  A +A G P + I G EADD+I
Sbjct: 63  ACVFDAKGKTFRDDLYPAYKANRPAMPDDLRSQIEPLHEAIRAEGWPLVVIDGVEADDVI 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A ++G    + + DKD+ QLV     L +T+  E +D   V+ K+G+ P++++ 
Sbjct: 123 GTLVRHAAQKGIRSIVSTGDKDMAQLVDGHVTLVNTMSLETLDEAGVVAKFGVAPDRIID 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L GD++DN+PG+   G KTAA  L EYG L+N+L +A  +K     EN+    +   
Sbjct: 183 YLTLVGDAVDNVPGVAKCGPKTAAKWLAEYGTLDNLLAHADAVKGA-VGENLRAVVDWLP 241

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R L+ ++TDV +    + L+L+  +   L    +  EF   +  +             
Sbjct: 242 QARALLTIKTDVALPFDFDDLVLKPRDIDALRGLFERYEFRTWLREL------------- 288

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                             D +        P      R       
Sbjct: 289 ----------------------------------DASPATAVSSEPDCSGSHRA------ 308

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  I++   +  WV ++ T  + +  +   +      + I +A +  + +    
Sbjct: 309 -----GYEIILSEAQLDAWVARVATADAFALDVEASSASPLQCELIGLAFAVCEGE---- 359

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 ++ L  H +              + +K   E      +G N+KY + VL   GI
Sbjct: 360 ----AAYLPLGHHYA--GAPAQLSRAAAFARIKPLLEERAAKIVGQNLKYARHVLANCGI 413

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
           ++ G  +D +L SYVL++ +  H++AS+A + L        E+     + I  D+++  +
Sbjct: 414 ALGGAADDTLLQSYVLEAHQ-PHELASLANRHLGLATLACDELTGKGAARIGFDQVAVER 472

Query: 538 VQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             E+A E ++V L++   L  ++   EKL +VY  ++ P+ +V+ +ME  G+ +D+ LL 
Sbjct: 473 AGEYAAEQADVTLRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLA 532

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E+ + +L LE+  +  +G+ FNL SPKQ+GDILF +   P   KT  G    T ++
Sbjct: 533 AQSGELGRKMLELEQRAFQEAGQPFNLGSPKQIGDILFAQKGLPILKKTPGGAPS-TDEE 591

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             ++   D+PI + IL++R L+K+KSTY D LP  ++  T R+HT YS A+ +TGRLAS+
Sbjct: 592 TLELLALDHPIARAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATAVTGRLASV 651

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIP +T  G++IR AFI+PP   L+SADYSQIELRI+AH++    L   F N LD
Sbjct: 652 EPNLQNIPARTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLD 711

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AAE+FGV ++ VS + RR AK INF +IYG+S F LA+QL + RS A  +I RYF
Sbjct: 712 IHTATAAEVFGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAAQAWIDRYF 771

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+  Y+ +T+   R  GYVET+FGRR++  EIN+     R   ERAAINAP+QG+A
Sbjct: 772 TRYPGVANYMLRTRESARAQGYVETVFGRRLYLPEINARNPQRRQGAERAAINAPMQGTA 831

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI+V + ++  +L T++LLQ+HDEL+ EVPE E+      +   M        
Sbjct: 832 ADLIKLAMIAVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELPSHMCDVAA--- 888

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L+VPL+V + V  NW+  +
Sbjct: 889 -LKVPLRVGVGVGGNWEAAH 907


>gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2]
 gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2]
          Length = 931

 Score =  890 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/993 (34%), Positives = 525/993 (52%), Gaps = 79/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56
           M     L LVDGSS++YRA++A P L R   G P      AI G  NM+  L    RK+ 
Sbjct: 1   MSNSKTLVLVDGSSYLYRAYHAMPDL-RAIPGDPASPATGAIRGMVNMMQAL----RKDV 55

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            A +   +FD    TFR+E+Y +YKA R  +P+ L  Q+  +    Q  G   + + G E
Sbjct: 56  QADYAVCVFDASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVQLLGWKVVAVPGVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+IAT    A  +G  V + S DKDL QLV     + DT+  +K D+  V  ++G+PP
Sbjct: 116 ADDVIATLAQTAAAQGIQVIVSSGDKDLSQLVGEHVTIIDTMNGKKRDVAGVTAEFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             M+  QAL GD++DN+PG+  +G KTAA  L+E+G+L+N++  A+ IK     +N+ + 
Sbjct: 176 ALMIDYQALVGDTVDNVPGVTKVGPKTAAKWLEEHGSLDNLIARAADIKG-VAGQNLRDA 234

Query: 237 AE--TARLSRKLVMLRTDVPIT------IPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
                  LSR+LV ++TD  ++        L+ + L + +   L  F +   F  L+  +
Sbjct: 235 IASGQLALSRQLVTMKTDCDLSSYISGLPQLDAITLAEPDSAALAPFYEKYGFKGLVRTL 294

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                                   G A        T           D  +   +    Q
Sbjct: 295 ------------------------GAAAAEAKAAKTDSAQGGLFDADDAAATEVAVTAQQ 330

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           +  L               YT I+N   + +W+ K+      +    TD++D   ++ + 
Sbjct: 331 RDVL---------------YTTILNEAQLDEWLAKISAAELTALDTETDSLDEMVARIVG 375

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           I+ S     +     +    +D+    + D          +L+ LK + E+    K+G +
Sbjct: 376 ISFSVAVG-EAAYIPLRHEGMDVPEQLNMDM---------VLARLKPWLEDAGKKKLGQH 425

Query: 469 IKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSR 524
           +KYD+ V   +GI++RG+  D ML SYVL++ R  H++ S+A + +     + +++    
Sbjct: 426 VKYDQHVFANHGITVRGYAHDTMLQSYVLEADR-PHNLTSLALRHVSRSGISYEDLCGKG 484

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQM 583
           K+ IP  ++S  +   ++ E+S+  L +   L P++     LLH+YE L+    + + ++
Sbjct: 485 KNQIPFAQVSVDKAAAYSCEDSDQTLDVHNTLWPRIQAHAGLLHIYE-LEMQTSEALFRI 543

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+ ID   L + S ++   +L LEE  Y+++G+ FNLSSPKQLG+I F KL  P   
Sbjct: 544 ERNGVSIDAGELARQSNDLGARILKLEEEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVK 603

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT TG   T  + LE++   D P+   +LE R LSK+K TY D L         RVHT Y
Sbjct: 604 KTATGARSTDEEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHY 662

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           + A  +TGRL+S +PNLQNIP++T  G+++R AF++P  K + SADYSQIELRI+AH++ 
Sbjct: 663 AQAVAVTGRLSSNDPNLQNIPVRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSG 722

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F+N LD+HR  AAE+FGV++++VS + RR+AK INF +IYG+S F LA  L I
Sbjct: 723 DEALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGI 782

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
               AA YI +YF R+PG+  Y+++T       GYVET+FGRR+   EIN      +   
Sbjct: 783 ETKAAAAYIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAA 842

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAAINAP+QG+AAD+ ++AM++V   L+  K    +++Q+HDELVFE+PE         
Sbjct: 843 ERAAINAPMQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPEAARDWVQAE 902

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           I   M        +L VPL   I   ++W++ +
Sbjct: 903 IPSIMAGVA----DLSVPLLAEIGFGSSWEKAH 931


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score =  890 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/983 (32%), Positives = 520/983 (52%), Gaps = 75/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N LFL+D  + I+R++YA     R    GL  +AI GF N L +++   +     ++  V
Sbjct: 2   NKLFLLDAYALIFRSYYALIRAPRINSKGLNTSAILGFVNTLNEIITKEK----PTYIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +P YKA R + PE +   +P ++   +AF IP ++++GFEADD+I T
Sbjct: 58  AFDL-GKTFRHEAFPPYKAQRQETPEDITLSVPFIKDILRAFHIPILQVEGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGI-PPEKM 179
               A KEG A  +++ DKD  QL+     +Y        DI   + + +K+GI  P ++
Sbjct: 117 LATKAGKEGIATYMLTPDKDYGQLIRENVFMYRPRHGGGYDIIGEQEIAEKYGISTPAQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTA  L+ E+G+++ ++ +  ++K  K RE +    E 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAVKLINEFGSIDELISHTDKLKG-KMREKVEGAIED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVP+ + L+ L L+  +  +L      LEF  L N++           
Sbjct: 236 IKMSKFLATIRTDVPVELNLDELQLQAPDEQKLSEIFAELEFKSLANKI----------- 284

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                 +N TE K   + +E+            +++   S++ SE               
Sbjct: 285 ------LNKTEQKQKLVNSEL---------DLFAVNPHESQVASENA----------SFE 319

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I N ++  +      T    S    T + +A  ++ + +  +  + K  
Sbjct: 320 SLKTIKHDYQLIDNQEEAHRICDFFRTKRILSLDTETTSTNAIDAELVGLCFAVEEHK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +     +          + ++  K  +E+   LKIG N+KYD  VL  Y
Sbjct: 378 ------AFYVAIPNDREE--------ALQYVNIFKPVYEDPSILKIGQNLKYDYEVLKNY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS-RKSSIPIDKIS 534
           G+++ G   D ML  YV+      H++  +A+  L Y      E++    K    +  + 
Sbjct: 424 GVTLGGKMFDTMLAHYVIQPELH-HNMDYMAETLLHYKTIHIDELIGPRGKHQKSMRDLD 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V E+A E++++ LQL  +L PKL      +++  ++ P++ V++ ME+ G+++D D 
Sbjct: 483 PKDVYEYAAEDADITLQLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDA 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653
           L   S   ++ +  LE+ IY+ +GE FN+SSPKQ+GDILF K++      KTKTGQ+ T 
Sbjct: 543 LHDTSMIFTERMNRLEQQIYEKAGETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTN 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+ +    +PI+ +IL++R L K+  TY ++LP  INKRT  +HT ++ A T TGRL
Sbjct: 603 EEVLQSLRA-KHPIVADILDYRGLKKLLGTYVEALPKLINKRTGHIHTSFNQALTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++++ G++IR+ F+        SADYSQIELRI+AH++    + + F  
Sbjct: 662 SSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMIEAFRQ 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+  +I  V+ + R+ AK  NF IIYGI+ + LA ++ I   EA + I+
Sbjct: 722 GFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTYGLAQRMEIDNREARELIE 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +  Y+E+ K   R+ GY ET+FGRR +  +I S   ++R   ER AINAPIQ
Sbjct: 782 GYFATFPKVRAYMEQAKEEARRKGYAETLFGRRRYLPDITSKNGTVRGFAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GS ADI + AMI + +      + +KM+LQ+HDEL F V  +E     +I++  M+ A  
Sbjct: 842 GSEADIIKIAMIRIWQRFRAENIRSKMILQVHDELNFSVYPDEKERVEKIVLEEMQGA-- 899

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL  +     NW E +
Sbjct: 900 --YQLQVPLIADAGWGKNWLEAH 920


>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
 gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
          Length = 920

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/983 (32%), Positives = 523/983 (53%), Gaps = 75/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           N LFL+D  + I+R++YA     R    GL  +AI GF N L +++   +     ++  V
Sbjct: 2   NKLFLLDAYALIFRSYYALIRAPRINSKGLNTSAILGFVNTLNEIITKEK----PTYIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E +P YKA R + PE +   +P ++   +AF IP ++++GFEADD+I T
Sbjct: 58  AFDL-GKTFRHEAFPPYKAQRQETPEDITFSVPFIKDILRAFHIPILQVEGFEADDVIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGI-PPEKM 179
               A KEG A  +++ DKD  QL+     +Y        DI   + + +K+GI  P ++
Sbjct: 117 LATKAGKEGIATYMLTPDKDYGQLIRENVFMYRPRHGGGYDIIGEQEIAEKYGISTPAQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTA  L+ E+G+++ ++ +  ++K  K RE +    E 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAVKLINEFGSIDELISHTDKLKG-KMREKVEGAIED 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVP+ + L+ L L+  +  +L      LEF  L N++           
Sbjct: 236 IKMSKFLATIRTDVPVELNLDELQLQAPDEQKLSEIFAELEFKSLANKI----------- 284

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                 +N TE K  ++ +E+            +++   S++ SE               
Sbjct: 285 ------LNKTEQKQKSVNSEL---------DLFAVNPHESQVASENA----------SFE 319

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I N ++  +      T    S    T + +A  ++ + +  +  + K  
Sbjct: 320 SLKTIKHDYQLIENQEEAHRICDFFRTKRILSLDTETTSTNAIDAELVGLCFAVEEHK-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +     +          + ++  K  +E+   LKIG N+KYD  VL  Y
Sbjct: 378 ------AFYVAIPNDREE--------ALQYVNIFKPVYEDPSILKIGQNLKYDYEVLKNY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS-RKSSIPIDKIS 534
           G+++ G   D ML  YV+      H++  +A+  L Y      E++    K    +  + 
Sbjct: 424 GVTLGGKMFDTMLAHYVIQPELH-HNMDYMAETLLHYKTIHIDELIGPRGKHQKSMRDLD 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V E+A E++++ LQL  +L PKL      +++  ++ P++ V++ ME+ G+++D D 
Sbjct: 483 PKDVYEYAAEDADITLQLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDA 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653
           L   S   ++ +  LE+ IY+ +GE FN+SSPKQ+GDILF K++      KTKTGQ+ T+
Sbjct: 543 LHDTSMIFTERMNRLEQQIYEKAGETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTS 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+ +    +PI+ +IL++R L K+  TY ++LP  INKRT  +HT ++ A T TGRL
Sbjct: 603 EEVLQSLRA-KHPIVADILDYRGLKKLLGTYVEALPKLINKRTGHIHTSFNQALTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++++ G++IR+ F+        SADYSQIELRI+AH++    + + F  
Sbjct: 662 SSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMIEAFRQ 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+  +I  V+ + R+ AK  NF IIYGI+ + LA ++ I   EA + I+
Sbjct: 722 GFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTYGLAQRMEIDNREARELIE 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +  Y+E+ K   R+ GY ET+FGRR +  +I S   ++R   ER AINAPIQ
Sbjct: 782 GYFATFPKVRAYMEQAKEEARRKGYAETLFGRRRYLPDITSKNGTVRGFAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GS ADI + AMI + +  +   + +KM+LQ+HDEL F V  +E     +I++  M+ A  
Sbjct: 842 GSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFSVYPDEKERVEKIVLEEMQGA-- 899

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L+VPL  +     NW E +
Sbjct: 900 --YQLQVPLIADAGWGKNWLEAH 920


>gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
 gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
          Length = 949

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/988 (33%), Positives = 525/988 (53%), Gaps = 58/988 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  LFL+D  + I+R +YA     R    G+ V+AI GF N L+ +++  R +    H
Sbjct: 7   NTQKRLFLLDAYALIFRGYYALIKNPRITSSGMDVSAIMGFTNSLFDVIKRERPD----H 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    + R E Y DYKANR + PE +   +P ++   +A  IP IE +G EADD+
Sbjct: 63  LAVAFDKGGSSARVEAYADYKANRDETPEAIRIAVPHIQEILKAMHIPIIEREGVEADDL 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP- 175
           I T    AEKE F V +++ DKD  QLVS    +Y   +     E   I  V K++ +  
Sbjct: 123 IGTLAKQAEKEDFKVFMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQKRFEVER 182

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE+++    + GD+ DNIPG+PG+G KTA   +  YG++E +L N  ++K  K +E ++ 
Sbjct: 183 PEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIAAYGSMEGLLENTDKLKG-KMKEKVIA 241

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            AE   LS++L  +  D  +    +   L + +   +      LEF ++ ++    +  +
Sbjct: 242 NAELGLLSKQLATIMLDCDVQFDAKDYELSEPDAEAVTKKFDELEFRRMKDQFVKIFSGE 301

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A     V    +  +    A             S F      T+   ++ + +K   +  
Sbjct: 302 AEQGTQVSSTPSAKKQAATAAGAGQF-------SLFGGDGGATAATVADASTRKTIKDT- 353

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  I +    + ++Q L    S  F   T  +D   ++ + +A S   
Sbjct: 354 ---------QHFYQTIDSPLARKLFIQNLLKQTSVCFDTETTGLDPLVAELVGVAFSWEA 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K          +I       +         + ++  L+ FFE+    KIG N+KYD  V
Sbjct: 405 GKG--------YYIPFPESKDE--------AQALIEELRPFFEHTGIEKIGQNLKYDIKV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPI 530
           L +Y + ++G   D ML  Y+++     H++  +A+ +L+Y      + I K  K+   +
Sbjct: 449 LAKYDVKVKGKLFDTMLAHYLINPDM-RHNMDVLAETYLNYTPVSITELIGKKGKNQKSM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +   Q  E+A+E++++ LQL      +L       ++  ++ P++ V++ ME+ GI +
Sbjct: 508 RDVPLDQQTEYAVEDADITLQLKQHFEKELDEAGTRKLFNDIEIPLLRVLAAMEVEGINL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D + L+ +S +++ ++  L   IY+ +GE+F +SSPKQLG+ILF K+K      KTKTGQ
Sbjct: 568 DVNFLESLSGDLNADIERLTSEIYEEAGEEFKISSPKQLGEILFDKMKLVDKPKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  TA+D+      D+ II+ +L++R LSK+KSTY D+LP  +  +  RVHT Y      
Sbjct: 628 YS-TAEDVLSYLAKDHDIIQKVLDYRGLSKLKSTYVDALPEQV-AQDGRVHTDYMQTVAA 685

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A +++   + 
Sbjct: 686 TGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMI 745

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F +  DIH   AA++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q  + R EA
Sbjct: 746 QAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEA 805

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  Y+  +P +  Y+ +  +F R+NGYV+T+  RR + + INS    +R   ER A+
Sbjct: 806 KELIDNYYKSYPKLRNYMSELVDFARENGYVKTVLDRRRYLNGINSSNGVVRGAAERNAV 865

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI++ + LE+    TKMLLQ+HDELVF+VP  E+     +I   M
Sbjct: 866 NAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVFDVPNIELDDIKNLIKTEM 925

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A      + VPL V + V  NW E +
Sbjct: 926 ESA----FKMAVPLDVEVGVGQNWLEAH 949


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/989 (35%), Positives = 551/989 (55%), Gaps = 62/989 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++  LFL+D  + I+R +YA    P L+ K  GL  +AI GF N L +L++  +     
Sbjct: 4   TQDKRLFLIDAYAMIFRGYYALIRNPRLTSK--GLDTSAIFGFTNSLIELIRREK----P 57

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV+FD    + R + + DYKANR + PE +   +P +    +A  IP + ++G+EAD
Sbjct: 58  THLAVVFDVGQASVRTDDFSDYKANRSETPEAIKIAVPYIHRILEAMHIPILGVEGYEAD 117

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D+I T    AEKEG+   +++ DKD  QLV+    +Y    +    E + +E V  K+ I
Sbjct: 118 DVIGTIACKAEKEGYTTYMVTPDKDFAQLVTDKIKIYKPGLKGGDIEILGVEEVKAKYEI 177

Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P++++   A+ GD++DNIPG+ G+G KTA   L+E+G +EN+L N  ++K  K +E +
Sbjct: 178 EDPKQVIDFLAMMGDAVDNIPGLEGVGEKTAMKFLKEFGTIENLLANTDKLKG-KLKEKV 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
              AE   LS+KL  +  D P+    E   LE  +  ++      +EF +L   +   + 
Sbjct: 237 EASAERGILSKKLATIICDAPVEFHQEQYDLETPDFEKVKEVFDEIEFRRLYENLYRAF- 295

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
              A      + ++  E K     TE+     ++   F++  +     +++ T +     
Sbjct: 296 ---APAPAETIVVSEVEVKQTPAGTEVKGQ-VMQLDLFANFEELEQATSTKSTIEH---- 347

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                     N+  Y  I N K  ++ V  L       F   T +++   ++ + ++ S 
Sbjct: 348 ----------NDHLYQFINNPKAQKKLVDNLLQQKVVCFDTETTSLNELEAELVGMSFSY 397

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                    K    +I LS   ++          + L   + FFE E  LK+ HN+K+D 
Sbjct: 398 K--------KGLAYYIPLSEDRAE--------VLQTLEIFRPFFEKEDLLKVAHNLKFDY 441

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSI 528
            VL +Y I+++G   D M+  Y+L+     H +  +++ +L+Y    I     K  K   
Sbjct: 442 KVLKQYDITVKGAMFDTMIAHYLLNPD-GRHGMDYLSEVYLNYKPVSIETIIGKKGKKQG 500

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                      ++A E+++V  QL+ L  P+L  E L  ++  ++ P+++V+++ME++GI
Sbjct: 501 NFRDADLRTQTDYAAEDADVTFQLYELFAPQLKKENLEELFYNIEMPLMEVLAKMELSGI 560

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
            +D+  L Q S ++  +L  LE  I++LSGE+FN++SP+QLG+ILF K++  P   KTKT
Sbjct: 561 SLDEKWLAQESVDLENDLKGLEAKIFELSGEEFNMNSPRQLGEILFEKMQLDPKAKKTKT 620

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+  T++D+ Q     + IIK+ILE+R   K+KSTY D+LP+ I+K   RVHT +S  +
Sbjct: 621 GQY-ATSEDVLQKLSSKHEIIKHILEYRTYQKLKSTYVDALPSQIDKDDNRVHTNFSQTT 679

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRLAS+ PNLQNIPI+T  GQ+IR AF+S   KK+ISADYSQIELR++A I+    +
Sbjct: 680 AATGRLASVNPNLQNIPIRTLRGQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENM 739

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F++  DIH   AA++F + + +VS   R  AKT+NF IIYG   F LA Q  + R+E
Sbjct: 740 IKAFQDGEDIHASTAAKLFKIPLAEVSKTQRSQAKTVNFGIIYGQGAFALAEQTGLSRTE 799

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A   I+ YF  +P + EY+ +  N  RQ GYVETI GR+ H  +INS    +R   ER A
Sbjct: 800 AKQMIEAYFETYPKLKEYMAEQVNKARQLGYVETILGRKRHLKDINSNNFVVRGHAERNA 859

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAP+QGSAADI + AMI + + LE+ +L TKMLLQ+HDELVFE P +EI +AS +I   
Sbjct: 860 VNAPVQGSAADIVKIAMIKIDRELEEQQLKTKMLLQVHDELVFEAPADEIESASHLIRTE 919

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A    +  +VPL V I V +NW E +
Sbjct: 920 MENA----LKTQVPLLVEIGVGDNWLEAH 944


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/982 (35%), Positives = 530/982 (53%), Gaps = 75/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    GL  +AI GFCN L ++L         ++  V 
Sbjct: 3   KLFLLDAYALIYRSYYALLRAPRINSKGLNTSAIMGFCNTLNEVLTKEN----PTYIGVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   TFR++ +P YKA R + PE +   +P+++   +A+ IP ++  GFEADDII T 
Sbjct: 59  FDH-GKTFRHDAFPAYKAQREETPEDIKASVPIIKDILRAYKIPILQADGFEADDIIGTI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPE-KMV 180
              A ++G    +++ DKD  QL+     +Y        E +  + + +K+GI    +++
Sbjct: 118 AIQAGEKGIDTYMLTPDKDYGQLIRKNVKMYRPQHGGGYEILGEKEIAQKYGISSSTQII 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GDS DN PG PG+G KTAA L+ ++G++EN+L N S++K  K +E +    E  
Sbjct: 178 DLLALMGDSADNFPGCPGVGEKTAAKLINQFGSVENLLNNTSQLKG-KLKEKVENAVEDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S  L  +RTDVP  I +E L L++ +  +L      LEF    N++            
Sbjct: 237 KMSYFLATIRTDVPTDIKMEDLKLQEPDADKLDEIFTELEFKSFKNKI------------ 284

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                +N +ENK      E+D     +T   +                   + +      
Sbjct: 285 -----LNKSENKKKNAIQELDLFAVEQTDGQT-------------------ISKNASFET 320

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              ++  Y  I N +D +     L T  + S    T + +A  ++ + ++ +  + K   
Sbjct: 321 IKTHSHEYKLIDNEEDSKILCDFLLTFKNLSLDTETTSTNAIDAELVGLSFAVEENK--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +     +           I++  K  +EN+  LKIG NIKYD  VL  Y 
Sbjct: 378 -----AFYVAIPAEREK--------ALRIVNIFKPLYENKKILKIGQNIKYDYEVLLNYD 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           I ++G   D M+  Y++      H++  +A+ +L+Y     +E++    K+   +  ++ 
Sbjct: 425 IEIKGKMFDTMIAHYLIQPELH-HNMDYLAEVFLNYQTIHIEELIGPKGKNQKNMRDLNP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             V E+A E++++ L+L  +L PKL   K  H++  ++ P+I V++ ME  GI +D + L
Sbjct: 484 KDVYEYAAEDADITLRLKNVLEPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNAL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTA 654
           ++ S   ++ +   EE IY+ + EKFN+SSPKQ+GDILF K+       KTKTGQ+ T+ 
Sbjct: 544 QETSKVFTERMRKYEEKIYEEAAEKFNISSPKQVGDILFGKMHIMEKPKKTKTGQYVTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L+ I    NPI++NIL +R + K+ STY D+LP  INKRT  +HT ++ A T TGRL+
Sbjct: 604 EVLQSIRA-KNPIVENILNYRGMKKLLSTYVDNLPTLINKRTGHIHTSFNQALTATGRLS 662

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++TD G++IR+ FI  P     SADYSQIELRI+AH++    + + F   
Sbjct: 663 SSDPNLQNIPVRTDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSGDENMIEAFREG 722

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA+I+   I+KV+   R+ AK  NF IIYGI+ + LA ++ I  SEA D I  
Sbjct: 723 FDIHRATAAKIWHEEIDKVTDSQRKKAKQANFGIIYGITTYGLAQRMNISNSEAKDLITD 782

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP +  Y+EK K   R+NGY ETIFGRR +  +INS   ++R   ER AINAPIQG
Sbjct: 783 YFKTFPKVQAYMEKAKEAARKNGYAETIFGRRRYLADINSHNGTVRGFAERNAINAPIQG 842

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           S ADI + AMI +        + +KM+LQ+HDEL F V  EE     QI++  M+ A   
Sbjct: 843 SEADIIKVAMIKIWNRFRQEGIKSKMILQVHDELNFSVYPEEKEKVEQIVIQEMQNA--- 899

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             +L VPL  +    NNW E +
Sbjct: 900 -FHLDVPLTADAGWGNNWLEAH 920


>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
 gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
          Length = 947

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/987 (36%), Positives = 564/987 (57%), Gaps = 57/987 (5%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             LFL+DG + +YRA +A    P+ + K  G+  +A+ GF   L ++++N +     +HF
Sbjct: 3   KKLFLLDGMALVYRAHFALVARPIFTSK--GVNTSALYGFTQTLLEIIKNQQ----PTHF 56

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A T R+  +P+YKA R ++PE L   LP VR   +AF IP I   G+EADD+I
Sbjct: 57  AVAFDTAAPTARHVEFPEYKAQREEMPEDLSKALPHVRRMVEAFNIPLIICDGYEADDLI 116

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-P 176
            T    AEKEGF   +++ DKD  QLV   T LY   +     E + +  +++KWG+  P
Sbjct: 117 GTLVRKAEKEGFVSYMVTPDKDFGQLVDQNTFLYKPSRMGEGIEILGLPEILQKWGVQRP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ +  L GD  DNIPG+PGIG KTAA L+ +YG++EN+L + + +K  K +EN+  +
Sbjct: 177 EQVIDVLGLWGDVSDNIPGVPGIGEKTAAKLIAQYGSVENLLAHTAELKG-KLKENLEAH 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS++L  +  + P ++ LE L ++ CN   L +     EF  +  R+        
Sbjct: 236 REQALLSKRLATINCEAPCSVTLEGLEVKKCNEEALKNLFVEFEFNSIGRRLFGDDYKAG 295

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +       + +    A + ++       T +F+  S+      +E+ P    L+ + 
Sbjct: 296 RGFDETTAQPQSAKKASAARDNQV-------TEEFALFSETEEPNQAEEAPIASNLKTIN 348

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            ++        Y  I + +   + +++L  + +  F   T ++D   ++ I +A +   Q
Sbjct: 349 DVAH------DYRLITDGEGRSKLIKQLAGLKTFCFDTETTSLDTKEARLIGLAFAFEKQ 402

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K             ++V    +        +EIL   +  FENE   K+GHN+KYD  VL
Sbjct: 403 KGFY----------VAVPADPEE------AREILQEFRAVFENEQIQKVGHNLKYDLAVL 446

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPID 531
             +G+ + G   D ML   +++     H +  +++ +L Y+   I K     +   + + 
Sbjct: 447 KWHGVGVHGKLFDTMLAHSLIEP-EMRHGMDYMSEVYLGYSPISITKLIGDEKSKQLNMA 505

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +  ++V E+A E+++V  QLW  L P L  +    V+  ++ P+I V++ ME  GI++D
Sbjct: 506 DVPVAKVAEYAAEDADVTWQLWEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVD 565

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQW 650
              L + S ++SK + + E+ IY L+G++FNL+SP+QLG+ILF KLK   +  KTKTGQ+
Sbjct: 566 ASALAEFSTQLSKEMANHEQTIYRLAGQEFNLNSPRQLGEILFDKLKISENAKKTKTGQY 625

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  Q L  +   D+ I++ +L++R  +K+KSTYAD+LP  I K T RVHT ++ A T T
Sbjct: 626 ATNEQTLMDLAA-DHEIVQRLLDYRGATKLKSTYADALPGTIWKPTGRVHTTFNQAVTTT 684

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL S  PNLQNIPI+T+ G++IR+AF+       L+SADYSQIELRI+A ++    + +
Sbjct: 685 GRLNSQNPNLQNIPIRTEQGKEIRKAFVPRNEDYVLLSADYSQIELRIIAALSHEQGMLE 744

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F   LDIH   AA ++GV +++V+P+MRR AK +N+ I YGIS F LA +LRIPR EAA
Sbjct: 745 DFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYGISAFGLAQRLRIPRKEAA 804

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I++YF ++PGI +Y+  T +F +Q+GYVET+ GRR +  +I S  +++R   ER AIN
Sbjct: 805 TIIEQYFAQYPGIAKYMRDTIDFAKQHGYVETVTGRRRYMRDIRSANAAVRGGAERNAIN 864

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQG+AAD+ + AMI++H  L   KL ++MLLQ+HDELVF+V + E     QI+   M 
Sbjct: 865 APIQGTAADMIKIAMINIHGELTKRKLKSRMLLQVHDELVFDVHQTEENEVRQIVEEKMR 924

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A    I L VP++V I     W E +
Sbjct: 925 TA----IQLEVPIEVEIGSGKTWLEAH 947


>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
 gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
          Length = 950

 Score =  885 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/986 (34%), Positives = 523/986 (53%), Gaps = 78/986 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + +  LFL+DG + +YRAFYA         DG+P  A+ GF   L ++++  R +    +
Sbjct: 32  KTKPGLFLLDGMALVYRAFYALQQARMSTRDGVPTGAVFGFATSLLRIIEEYRPD----Y 87

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD P  TFR+E Y  YKANRP  P+ L+ QL  +R   +A GIP I + GFEADD+
Sbjct: 88  LAVAFDSPEKTFRHEKYKAYKANRPAPPDDLINQLDNIRELIRACGIPLIIMPGFEADDL 147

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T     E +   V I++ DKD+ QLV     +    K+    E +    V +++G PP
Sbjct: 148 IGTTARKFEAD-CQVFIVTPDKDMSQLVHDGVRILKPGKKQNEFELLGSREVAEQFGAPP 206

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+ + L  LTGD+ DNIPG  GIG KTA+ LL++YG+LE I  N   +  K  R+++  +
Sbjct: 207 EQFIDLLTLTGDTSDNIPGAKGIGPKTASSLLKKYGSLEGIYANIDALTPKT-RQSLEAF 265

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E   L R+LV +RTD+ + + LE L     +   L + L  LE   +  R+      D 
Sbjct: 266 REMMPLVRELVTIRTDLDLPLTLEALHASKPDPEALFALLAKLELKSIAARLPAVLQID- 324

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                          TS  SS  +  +  NS        +   +
Sbjct: 325 -------------------------------TSAASSSENAPAMANSVDPGDPQLIPAGE 353

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I + +   + +  LE  G  +    T ++D F ++   I+ S    
Sbjct: 354 G--------SEYHLIDSKEAFDKLLTLLENSGGFAVDTETTSLDTFTAELAGISCSVKPG 405

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +    +                        K  ++ LK   EN    K G N+KYD LVL
Sbjct: 406 EAFFVYFGTPG----------------LDAKTTVARLKPLLENPEIPKTGQNLKYDILVL 449

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            +YG+ +     D ML SYVL+   + H++  +A  +L        E++ + K +I I +
Sbjct: 450 KKYGVELAPVGFDTMLASYVLNP-EARHNLDDMAALYLGRQTTKYTELVGTGKQTIGIFE 508

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +   ++ ++A +++++ L+L   L  +L    +LL V  +L+ P++ V++ ME  GI ID
Sbjct: 509 VEPRKLSDYACQDADIALRLRYSLEEQLEKTPELLEVCRKLEFPLVRVLADMEHKGISID 568

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+S +++  L +L E I++ +GE FN+ SPKQLG ILF  LK P+   TKTG + 
Sbjct: 569 TAHLEQLSIKVTGELATLTERIFEATGETFNIDSPKQLGHILFDVLKLPAKKATKTG-YS 627

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  Q LE++    +P+  ++LE+R L K+KSTY ++LP  IN  T RVHT ++ + T TG
Sbjct: 628 TNVQVLEELAML-HPVASDLLEYRSLQKLKSTYIEALPKMINPLTGRVHTSFNQSITATG 686

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIPI+T+LG++IRRAFI   P   L+SADYSQIELRI A ++    L + 
Sbjct: 687 RLSSSNPNLQNIPIRTELGKEIRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPMLIEA 746

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N  DIH   A  IF  + ++++P MRR AK +NF ++YGI PF L+ +L IP+ EA +
Sbjct: 747 FRNHEDIHAATARVIF--DTKEITPDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAKE 804

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  Y  ++PG+   ++      ++ GYV T+ GRR +  ++NS  S+IR   ER  +N 
Sbjct: 805 IIDTYMAKYPGMFSSLQTIIEEAKKKGYVTTLMGRRRYVPDLNSANSNIRKAAERVTMNT 864

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AM S+ + L+  +  + MLLQ+HDEL+FE+P +E     +++  +M +
Sbjct: 865 PIQGTAADIIKFAMCSISRELKKGEFRSAMLLQVHDELLFEMPPDEEARLREMVERNMIE 924

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A        VP++V+     NW E +
Sbjct: 925 AASKCGLKNVPVEVDTGSGKNWLEAH 950


>gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
 gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
          Length = 920

 Score =  885 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/983 (33%), Positives = 535/983 (54%), Gaps = 75/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + LFL+D  + IYR++YA     R    G   +AI GFCN L +++   +     +H AV
Sbjct: 2   DKLFLIDAYALIYRSYYAFIRSPRINSKGQNTSAILGFCNTLNEVITKEQ----PTHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+  +TFR+E +PDYKA R + PE +   +P ++   +A  IP ++  GFEADDII T
Sbjct: 58  AFDH-GLTFRHEAFPDYKAQREETPEDIKLAVPYIKQILEAMRIPILQTDGFEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPE-KM 179
               A  +G    +++ DKD  QL+     +Y        E I    +  K+G+P   ++
Sbjct: 117 VALKAGNDGIETYMLTPDKDYGQLIRNNIFMYRPRHGGGYEIIGPNEIQDKYGVPEAAQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GDS DN PG PG+G KTAA  + ++G++EN+L +   +K  K RE +    + 
Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAAKFINQFGSVENLLNHTDELKG-KMREKVEGAVDD 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            ++S+ L  +RTDVP  +  + L +E  +  +L    + LEF  L+N+          N 
Sbjct: 236 IKMSKFLATIRTDVPFDMKWDELKVEAIDEEKLTEIFQELEFKTLLNKF---IKKGKENP 292

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +   L +N  E      E   +R    + S   SLSD                       
Sbjct: 293 KTENLQLNLFE------EIPTERAVAPEKSPNLSLSDVP--------------------- 325

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I N ++ ++  +   T    S    T ++DA  ++ + ++ S  +++  
Sbjct: 326 ------HKYKLIENEEEAKKICEYFFTKQILSLDTETTSVDAIDAELVGLSFSVEEKE-- 377

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +S +  +           +++  K  +ENE  LK+G NIKYD  VL +Y
Sbjct: 378 ------AFYVAISPNREEALN--------MVNIFKPLYENEEILKVGQNIKYDYEVLKKY 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKIS 534
           GI+++G   D M+  Y++      H++  +A+  L+Y     ++I+    K    +  ++
Sbjct: 424 GITLKGKLFDTMIAHYLIQPELH-HNMDYMAETLLNYQTVHIEDIIGPKGKKQKNMRDLA 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            ++V ++A E++++ L+L   L PKL       ++  ++ P++ V++ ME+ GI++D + 
Sbjct: 483 PAEVSDYACEDADITLRLKNALEPKLKEVNAESLFWEIEMPLVRVLADMELHGIRLDTEA 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653
           L++ S   ++ +   E  IY+L+GE FN+SSPKQ+G+ILF KL+      KTKTGQ+ T+
Sbjct: 543 LEETSRIFTERMNKYEAEIYELAGETFNISSPKQVGEILFGKLQIMEKPKKTKTGQFVTS 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L  +    +PI++ ILE+R + K+ STY D+LP  +  +T  +HT ++ A T TGRL
Sbjct: 603 EEVLISLQS-KHPIVEKILEYRGIKKLLSTYIDALPKLVKPQTGHIHTSFNQALTATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++TD G++IR+ FI  P     SADYSQIELRI+AH+++   + + F  
Sbjct: 662 SSSDPNLQNIPVRTDDGKEIRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMMEAFRK 721

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AA+I+  ++E V+   R+ AK  NF IIYGI+ + LA ++ IP  EA + I 
Sbjct: 722 GHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIA 781

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  FP +  Y+E+ K   R+ GY ETIF RR +  +INS  +++R   ER AINAPIQ
Sbjct: 782 DYFKTFPKVQAYMEEAKEVARRKGYAETIFHRRRYLADINSRNATVRGFAERNAINAPIQ 841

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GS ADI + AM+++H+  E  ++ +KM+LQ+HDEL F V  EE     +I++  M+ A  
Sbjct: 842 GSEADIIKVAMVNIHQRFEREQIRSKMILQVHDELNFSVYPEEKELVERIVLEEMQNA-- 899

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               LRVPL  +     NW E +
Sbjct: 900 --YQLRVPLIADAGWGKNWLEAH 920


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/985 (35%), Positives = 545/985 (55%), Gaps = 69/985 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+DG + IYRA++A     R   +GL   AI GF N L ++L+N +     +H AV
Sbjct: 2   KKLFLLDGMALIYRAYFALSKTPRLTSNGLNTGAIMGFTNTLLEVLKNQK----PTHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A T R+  +  YKA+R K+PE L   +P +    + F IP I   G+EADDII T
Sbjct: 58  VFDIDAPTNRHIEFESYKAHREKMPEDLSASIPYIFRLIEGFNIPIITKDGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI-PPEK 178
                E++GF V  ++ DKD  QLVS    +Y   +     E   +  ++ KW I    +
Sbjct: 118 LAKEGEQKGFTVYCMTPDKDFGQLVSDNIFIYKPARMGNGAETQGVPEILAKWEISDVSQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +  L GD++DNIPGIPGIG KTA  L+Q++G++E I+ N+ ++K  K +EN+  +AE
Sbjct: 178 VIDILGLWGDAVDNIPGIPGIGEKTAKKLVQDFGSVEGIIANSDKLKG-KMKENVETFAE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS++L  ++ DVPI    + L+LED N   L      LEF  L  RV          
Sbjct: 237 QGLLSKRLATIQLDVPIEFDEKSLLLEDPNKEVLEPLFAELEFRTLGKRVF--------- 287

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                        +  ++     ++++ +   FS+  +  +    E  P           
Sbjct: 288 ------------GEDFSVADTTGKNSSGQMDLFSTTVNDLTPQQEEIPPVASN------- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  + +++  Q+  ++L    S  F   T  +DA  +  + ++ +    K 
Sbjct: 329 -NIDNTAHEYILVDSSEAQQKLAKELAGQKSFCFDTETTGLDALVADIVGLSFAFEKGK- 386

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++       Q          EI++  K   E+ +  K+G NIKYD L+L R
Sbjct: 387 -------AYYVPTPDSREQ--------ALEIVNIFKPVLEDANIEKVGQNIKYDILLLSR 431

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPIDKI 533
           Y + ++G   D ML  Y++D   + H +  +A+ +L Y    I K      K    +  +
Sbjct: 432 YDVKVKGTLFDTMLAHYLIDPD-TRHGMDVLAENYLGYIPVSITKLIGEKGKKQGNMRDV 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               ++E+A E++++ LQL     P L     L + + ++ P++ V+S++E  G++ID D
Sbjct: 491 EIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVD 550

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKT 652
           +L   S  I +++ +LE +IY+ +G KFN++SPKQLG++LF KL+  P   KTKTGQ+KT
Sbjct: 551 VLSVFSKTIEEDVRNLEASIYEKAGVKFNIASPKQLGEVLFDKLQLDPKAKKTKTGQYKT 610

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
               L  +    + I+++IL++RQL K+KSTY D+LP  IN  T  +HT Y+ A   TGR
Sbjct: 611 GEDVLLTL-ANKSDIVQDILDFRQLQKLKSTYVDALPGLINPTTGLIHTSYNQAVAATGR 669

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIPI+T+ G+++R+AFI       ++SADYSQIELR++A +++   + + F
Sbjct: 670 LSSTNPNLQNIPIRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANMLEAF 729

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +   DIHR  AA+++G+ +++VS   RR+AK +NF IIYG S F L+  L IPR EAAD 
Sbjct: 730 QKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREAADI 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I +YF ++ GI +Y+ K     ++NG+VETI  RR +  +INS   ++R   ER AINAP
Sbjct: 790 IDQYFQQYSGIRDYMAKAIASAKENGFVETILKRRRYLRDINSANMTVRGFAERNAINAP 849

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AM+ + + +E  +L+ KM++Q+HDELVF+VP +E+     +I + M+ A
Sbjct: 850 IQGSAADMIKVAMLRIQEDIEQQQLSGKMIMQVHDELVFDVPLDEVEKFKTLIQNRMKTA 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               I L+VP++V I    NW E +
Sbjct: 910 ----IPLQVPIEVEIGQGKNWLEAH 930


>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 923

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/979 (35%), Positives = 529/979 (54%), Gaps = 66/979 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+         + A + 
Sbjct: 3   KLVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVI 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+ +  +YK +RP +P+ L  Q+  +R    A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDALDSEYKMHRPPMPDDLRMQVEPMRGIVHALGIDILCIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-HVIKKWGIPPEKMVCLQA 184
             A  +G AVTI + DKD  QLV P   L +T+   ++D    VI K+G+ P++++   A
Sbjct: 117 LAAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DN+PG+   G KTAA  L EYG+L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKG-KIGDNLRVVLPRLLLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L+ ++TDV +    + L L + +   L  F +   FT+ +  +      D  ++   V 
Sbjct: 236 ALITIKTDVVLEKRPQDLALRERDTEALRDFYQRYGFTQALKEL------DGGSVAVTVA 289

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           +      +        D    ++ +   S S +                           
Sbjct: 290 EQEPGRGRNAGFHVAPDASVAMEINPALSASGE--------------------------- 322

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I   + +Q W+ +L   G  +    TD++D   +  I ++ ++ +         
Sbjct: 323 ---YETIFTIEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFAS-EVGCAAYLPF 378

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +    V   +                    E+    K+G + KYD  VL RYGI + 
Sbjct: 379 GHDYPGAPVQLDRGQALALLQPLL---------EDAAVRKVGQHGKYDMHVLRRYGIVLA 429

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL SG + HD+ ++A++ L Y      +++      IP   +   +  +
Sbjct: 430 GYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEATQ 489

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L PKL+ E +L  VY  ++ P++ V+ ++E  G+QID + L + S
Sbjct: 490 YAAEDADITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQS 549

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++S+ ++  ++   DL+G  FNL SPKQL  +LF +LK P   KT  GQ   T ++  +
Sbjct: 550 ADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPS-TNEEALE 608

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K+++TY + LP  I+  T RVHT Y  A   TGRL+S +PN
Sbjct: 609 AIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN 668

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+TD G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+ +D+H 
Sbjct: 669 LQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHC 728

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            +AAE+FG  I++V+P  RR AK INF +IYG+S F LA QL I R EA DYI  YF RF
Sbjct: 729 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ +++E T+   R  GYVET+FGRR++ + I S   + R   ERAAINAP+QG+AADI
Sbjct: 789 AGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848

Query: 900 TRRAMISVHKSL--EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
            +RAM++V   L    H+    M+LQ+HDELVFE  E  + T    +   M  A      
Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAAA----Q 904

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           LRVPL V++ V ++W E +
Sbjct: 905 LRVPLVVDVGVGHHWDEAH 923


>gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
 gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
          Length = 1022

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1011 (32%), Positives = 535/1011 (52%), Gaps = 73/1011 (7%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +++    LVDGS +++R ++A P       GL  NAI G  N L K+++        +H 
Sbjct: 49   KQQPPFVLVDGSYYLFRTYHALPKTMMTTQGLTTNAIRGTLNALLKVMRRYH----PTHM 104

Query: 62   AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            AV FD  + TFR+ +  +YKANRPK+   L  Q+P +    +A GIP + I+G EADDII
Sbjct: 105  AVCFDTKSPTFRHTMSEEYKANRPKMDPELAEQIPYIHRLVRALGIPLLRIEGAEADDII 164

Query: 122  ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
             T T+ A +EG  V I + DKD+MQLV+    L D+   + +D+  V +K+GI P +++ 
Sbjct: 165  GTLTHRAIEEGHHVVISTGDKDMMQLVNDCVILEDSFAGKVVDVPAVEEKFGIKPNQIID 224

Query: 182  LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            L  L GD+ D I GIP +G KTA   L +Y  ++NIL NA  IK  K  E ++E+ +   
Sbjct: 225  LLTLMGDASDGIKGIPSVGQKTAVKWLNQYQTVDNILANAHNIKG-KVGEKLVEFVDNIP 283

Query: 242  LSRKLVMLRTDVPITIPLEHLIL---EDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              R+L  + T++ I    E L +          L      LEF   +  +        ++
Sbjct: 284  RDRQLATIVTNLDIGQDWEDLRINTDSSTFVAELRDLYSELEFKNELASLDHPNHPANSS 343

Query: 299  IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +  V       E++    +T   +  +                             ++ +
Sbjct: 344  VHSVADSKADAESQAQVAKTLQHQKQS---------------------------SIIEHI 376

Query: 359  SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                 ++ ++  I++       + KL+     +    T +++   ++ + ++ S    + 
Sbjct: 377  KNSNTHDKAWHTILDESAFDNLLNKLQAAPYFAVDTETTSINWREAQIVGLSFSVQAHEA 436

Query: 419  DTSFKVETIFID-----------------LSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
                     + +                 L+  T      K      +L+ LK   EN +
Sbjct: 437  YYLPLAHVDYNEPQKKAKNKKEEAEQAKLLANATVDPLIAKQLDRDTVLAKLKPILENPN 496

Query: 462  FLKIGHNIKYDKLVLHRYGISM----RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS-- 514
              KIG ++KYD  VL +YGI +    + +E D ML SYVL++  + H +  +A+ +L   
Sbjct: 497  IGKIGQHLKYDAHVLSKYGIELNMSPKNWEMDTMLASYVLNAAATRHSMDDLARHYLHTQ 556

Query: 515  -YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERL 572
              + +++       +  DK++ +   ++A E++++  QL+ L + KL  + +   +   L
Sbjct: 557  TISFEDVAGKGAKQVTFDKVAINIASDYACEDADITYQLFELFQDKLKDDAVNQRLLHEL 616

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            + P+  ++ QME  GI I +  L ++S    + +++LE+  Y  +GE FNL SPKQLG++
Sbjct: 617  EIPVAQILCQMESEGIMIKRSFLNELSERFDEEIVALEKQAYIEAGEAFNLGSPKQLGEM 676

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            LF KL    G KTK+GQ+ T       ++  ++P+ +  LE+R L+K+K+TY D+L    
Sbjct: 677  LFDKLGVIGGKKTKSGQYSTGEAV---LSKIEHPLAEIALEYRSLAKLKNTYTDALDAVA 733

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            +  T RVHT Y  A T TGRL+S +PNLQNIPI+T  G+ IR+AFI+P  + L++ADYSQ
Sbjct: 734  DNDTDRVHTSYHQALTSTGRLSSTDPNLQNIPIRTKTGRLIRQAFIAPKGRVLLAADYSQ 793

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            IELR++AH +    L + F   LDIH   AAE+ G +++ V+P  RR+AK INF ++YG+
Sbjct: 794  IELRLMAHFSGDDNLTRAFNEGLDIHSATAAEVLGKSVDDVTPTERRNAKAINFGLLYGM 853

Query: 813  SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            S F LA Q+++ RSEA DYI +YF R+PG+  Y+++T+N    NGY+ETI GR+++  +I
Sbjct: 854  SAFGLAKQIQMGRSEAQDYINQYFARYPGVQRYMQETRNSAVDNGYIETILGRKLYTPDI 913

Query: 873  NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
                  +R   ERAAINAP+QGSAAD+ + AMI+V   L       KMLLQ+HDELVFEV
Sbjct: 914  QHSNQMVRRGAERAAINAPLQGSAADLIKLAMIAVDNVLPKQN--AKMLLQVHDELVFEV 971

Query: 933  PEEEITTASQIIVHSMEKA-------CLPKINLRVPLKVNIKVSNNWQEEN 976
              +++   +++I ++M+             ++  VPL V   V +NW E +
Sbjct: 972  DADKVDHIAKLIKNAMQNVLSDTAKQMGWDVDFAVPLLVETGVGDNWDEAH 1022


>gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 931

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/983 (33%), Positives = 523/983 (53%), Gaps = 65/983 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + IYR++YA     R    G   +A+ GF N L +LL+        +H AV 
Sbjct: 2   KLFLLDAYALIYRSYYAFIKSPRVNSKGQNTSAVFGFVNTLEELLRKEN----PTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR++ Y  YKA R + PE +   +PL++    A+ I  +E+  +EADD+I T 
Sbjct: 58  FDPPGGTFRHDAYELYKAQRQETPEDIRAAVPLIKEIIAAYNIKELEVARYEADDVIGTI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP-PEKM 179
              AEKE F V +++ DKD  QL S    +Y         + +D + +++K+ +  P +M
Sbjct: 118 AKKAEKENFDVYMMTPDKDYGQLTSDHIFMYKPKFAGTGFDTLDAKAIMEKYELSSPGQM 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L GD+ DNIPG PG+G KTA  LL+EYG +EN+L + + +K    +  + E  E 
Sbjct: 178 IDLLGLMGDASDNIPGCPGVGPKTAQKLLEEYGTIENLLEHTADLKG-TLKLRLEENKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ L  ++TDVPI         ++ N  +L +  + LEF  LINRV       A  +
Sbjct: 237 IIFSKFLATIKTDVPIEFNKNEFKRQEINAEKLSNLFEELEFRTLINRVLKKDGTPANPV 296

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                     I+   F+ L     K  S  T     L+ L+ + 
Sbjct: 297 RITT------------------THEAIQGDLFAEL--LPPKAESADTVNYSGLQELKDIP 336

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                  +Y  +    +I    + + +  S  F   T  +D   S+ + ++ +  + +  
Sbjct: 337 H------TYHLVEKDDEIANLAKTIASQQSCCFDTETTGLDPNVSELVGMSFAFREGE-- 388

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ +     +         K I+   + FFEN    KIG NIKYD +VL +Y
Sbjct: 389 ------AYYVPVPADFEK--------AKAIVEQFRPFFENGETEKIGQNIKYDIIVLKKY 434

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS-RKSSIPIDKIS 534
           GI +RG   D M+  Y+++     H++  +A+ +L Y      E++ S  K+ + +  + 
Sbjct: 435 GIHVRGRLFDTMIAHYLINP-ELRHNMDYMAETYLKYKTIHIDELIGSRGKNQLNMRSLR 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q++++A E++++ L+L  +L   +  + L  +   ++ P+I V++ ME TG+++D+  
Sbjct: 494 PDQIKDYACEDADITLKLKAILEKAIEKQDLGKLLYDIELPLIYVLADMEYTGVRLDKTA 553

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           L + S  ++  L  +E  IY  + ++FN++S KQ+G++LF KLK      KTKTGQ+  T
Sbjct: 554 LAEYSKTLTLELQGIESEIYKAAEQEFNINSAKQVGEVLFDKLKIVEKPKKTKTGQY-VT 612

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +++  +     + I+  ILE+R L K+ STY D+LP  ++    ++HT Y+   T TGRL
Sbjct: 613 SEETLESMKDAHSIVGKILEYRGLKKLLSTYIDALPLLVSPLDDKLHTSYNQTVTATGRL 672

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S  PNLQNIPI+   G++IR+AFI+       SADYSQIELRI+AH+++   +   F +
Sbjct: 673 SSSNPNLQNIPIRDAQGKEIRKAFIADEACIFFSADYSQIELRIMAHLSQDPTMIDAFNS 732

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA+I+ + I +V+  MRR AKT NF IIYGIS F LA +L IPR EA + I 
Sbjct: 733 GEDIHAATAAKIYKIPISEVTGDMRRKAKTANFGIIYGISVFGLAERLSIPRGEAKELID 792

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P + EY++K+ +  R N YVET+FGR+ +  +INS  +++R   ER AINAPIQ
Sbjct: 793 GYFATYPKVKEYMDKSISVARTNNYVETVFGRKRYLPDINSRNTTVRGYAERNAINAPIQ 852

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM  +    E   + +KM+LQ+HDEL F V   E+    +I++  ME A  
Sbjct: 853 GSAADIIKVAMNRIFDRFERENIKSKMILQVHDELNFNVESNELDKVQKIVIEEMENA-- 910

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPLK +     NW E +
Sbjct: 911 --YKLVVPLKADCGKGKNWLEAH 931


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/988 (34%), Positives = 540/988 (54%), Gaps = 55/988 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +  L+L+D  + I+R ++A     R    G+  +AI GF N L  +++  + +    H 
Sbjct: 2   SQKRLYLLDAYALIFRGYFAFIKNPRINSKGMDTSAIMGFMNALMDVIKREKPD----HL 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R E+Y +YKA+R + PE +   +P ++   +A  IP IE+ GFEADD+I
Sbjct: 58  AVAFDKGGSTYRYEMYQEYKAHRDETPEAIKIAVPYIQDLLKAMHIPIIEVAGFEADDLI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-P 176
            T    AEKE F V +++ DKD  QLVS    +Y   +     E   +  V+ K+ I  P
Sbjct: 118 GTLAKQAEKEDFKVYMVTPDKDFAQLVSENIFMYKPARMGNDIEIWGVPEVLAKFEIERP 177

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++    + GD+ DNIPG+PG+G KTA   L+EYG++EN+L N  ++K    ++ I   
Sbjct: 178 EQVIDFLGMMGDAADNIPGLPGVGEKTAKKFLKEYGSIENLLANTHQLKGA-IKDKIEAN 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E   LS+KL  +  D P+T       L   +  +     + LEF ++  +    +    
Sbjct: 237 KEKGILSKKLATILLDCPVTFNASTYELSKPDVEKTDELFQELEFRQMKTQFDKYF---G 293

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +   +D N  +N  I  +T   +    +   F   SDQ S            ++   
Sbjct: 294 TGKDYDEIDTNENDNSQIQKKTVAKKTNEDQFDLFG-FSDQESG----------EIKTDS 342

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             ++       Y  I     ++  +Q L    S  F   T  +DA +++ + ++ S    
Sbjct: 343 HYAKLENTEHFYQSIEGDFAVKLLLQNLLNQTSVCFDTETTGIDALNAQLVGMSFSFEKG 402

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K          ++    +            + +    K FFE+E   KIG NIKYD  +L
Sbjct: 403 K--------AFYVPFPEN--------QEDAQVLADKFKPFFESESIEKIGQNIKYDLKIL 446

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPID 531
             YG+ ++G   D M+  Y+++     H++  +++ +L Y+ K I     K  K+   + 
Sbjct: 447 SHYGVQIKGKLFDTMIAHYLINPDM-RHNMDVLSETYLKYSPKSIEDLIGKKGKNQKSMR 505

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +S  +++E+A E++++  QL     P L   +   ++E ++ P+I V++ ME+ GI +D
Sbjct: 506 DVSLEEIKEYAAEDADITYQLKQNFSPILDKAETKKLFEEIEIPLIPVLAAMELEGINLD 565

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQ 649
              LK +SAE++    +LE+ IY+ +GEKFNL+SPKQLGD+LF K+K       KTKTGQ
Sbjct: 566 VPFLKSMSAEMALESNALEQKIYETAGEKFNLASPKQLGDVLFDKMKIGGAKQKKTKTGQ 625

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  T +++      DNPI+K+ILEWRQ+ K++STY D+LPN ++K+T RVHT Y      
Sbjct: 626 Y-ATGEEILSYLANDNPIVKDILEWRQMVKLQSTYIDALPNQVDKKTGRVHTDYMQTVAA 684

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIP++T+ G+ IR+AFI       LISADYSQIELRI+A ++    + 
Sbjct: 685 TGRLSSNNPNLQNIPVRTERGRLIRKAFIPRNENYTLISADYSQIELRIIAALSGEENMI 744

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+N+ DIH+  AA++F V +E V+ + R +AKT+NF IIYG+S F L+ Q  + R E+
Sbjct: 745 AAFQNNQDIHKSTAAKVFNVALEDVTKEQRSNAKTVNFGIIYGVSAFGLSNQTSLSRKES 804

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           A+ I  Y+  +P +  Y+    +F R+NGYV+T+ GRR +  +INS    +++  ER A+
Sbjct: 805 AELIDAYYATYPKLKSYMSNQVDFARENGYVQTVLGRRRYLKDINSANMMVKSGAERNAV 864

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI++HK L      +KMLLQ+HDELVF+V   E+     +I + M
Sbjct: 865 NAPIQGSAADIIKIAMINIHKKLTQENWQSKMLLQVHDELVFDVHNSELEKIQPMIKYEM 924

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A      + VPL V I +  NW E +
Sbjct: 925 ENA----FKIDVPLDVEIGIGKNWLEAH 948


>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 899

 Score =  883 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/981 (34%), Positives = 525/981 (53%), Gaps = 88/981 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++  + LVD SSF+YRAF+A P L R  D LP  AI G  NML +LL+    +     
Sbjct: 1   MPQDPRI-LVDASSFLYRAFHALPDL-RAPDNLPTGAIYGVANMLRRLLKEHPSDE---- 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             VIFD P  TFR+ +YP+YKA+RP +PE L  Q+PL+    +A G+P +     EADD+
Sbjct: 55  IIVIFDAPGGTFRDRLYPEYKAHRPAMPEELRVQVPLLHDWIRATGLPLVIEPDVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A  +   V I++ DKD+ QLV+    L DT+K  + D   V +++G+PPE++ 
Sbjct: 115 IGTLAREAAPDQ-QVLIVTGDKDMAQLVNSRVRLIDTMKGIETDAAGVEERFGVPPERIA 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GD +DNIPG+PG+G KTAA  L +YG+L+ +L +A  I   K  E +   A   
Sbjct: 174 DLLALIGDKVDNIPGVPGVGPKTAARWLTQYGDLDGVLAHAGDI-GGKVGEALRASAHYL 232

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR L  +R D  +T+P+        +   L           L  R+            
Sbjct: 233 PLSRDLATIRCD--LTLPVATYARRAADVVAL---------RALAQRLG----------- 270

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                         F +        ++ + P+K           
Sbjct: 271 ------------------------------FQAWLRDLPAGDAGKVPEKR---------S 291

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I+  +Y  I   + +   +  L+     +    T ++D  H+  + I+ +     D  
Sbjct: 292 SDIDRAAYRAITTAEALDVLLLALKAADVVALDTETTSLDPLHADLVGISCAWQAGGDYQ 351

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +  V     D          G     + +L+ L+ + E+    K+  N KYD  V  R+G
Sbjct: 352 AVYVPVGHRD---------AGPQLDRQTVLTALRPWLEDPQAAKLAQNAKYDWRVFWRHG 402

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I   G   D +L SYVL+S  + HD+ ++A+++L +     +E++   KS+     +  +
Sbjct: 403 IHPAGLARDTLLESYVLNSSHNGHDLDTLAERYLQHQNIRYEEVVGKGKSARNFADVPVA 462

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +A E+++V L++  LL P+   E  L  V   ++ P++ V+++ME  G++ID+  L
Sbjct: 463 EALPYAAEDADVCLRVDALLWPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQL 522

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +S E+S+++   E+  + L+G+ FNL+SPKQ+ +ILF K++ P   KT  GQ  T   
Sbjct: 523 EVLSTELSRDMADCEQKAFVLAGQSFNLNSPKQIQEILFDKMRLPVLKKTPGGQPSTNED 582

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L Q+    + + + IL++R ++K+K+TYAD+LP  IN  T RVHT +  A   TGRL+S
Sbjct: 583 VLAQLAVHAD-LPRLILDYRGMAKLKNTYADALPQMINPDTGRVHTHFQQAVAATGRLSS 641

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++T+ G++IR+AF++     L+SADYSQIELRILAH++    L Q F    
Sbjct: 642 NDPNLQNIPVRTEQGRRIRQAFVAEEGHWLLSADYSQIELRILAHLSGDARLLQAFAEGE 701

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + AAE+F +  E V    RR AK INF +IYG +P+ LA QL I ++ A  Y+ RY
Sbjct: 702 DIHAVTAAEVFDLAPEDVDSAARRAAKAINFGLIYGQTPYGLAQQLGIDQAAARQYMDRY 761

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+ G+ EY+ +T+   ++ GYVET+FGRR++  EI S   + R   ERAAINAP+QG+
Sbjct: 762 FERYLGVLEYMAQTRALAKKQGYVETLFGRRLYVPEIRSSNPARRTYAERAAINAPMQGT 821

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI+V   L++     +M+LQ+HDEL+ EVPE  +  A   +   ME      
Sbjct: 822 AADLIKMAMIAVDAWLQERPERGRMILQVHDELILEVPEAGLEAAKSALKARMEGVA--- 878

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L VPL V + +  +W E +
Sbjct: 879 -ELAVPLLVGLGIGKHWDEAH 898


>gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
 gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
          Length = 963

 Score =  883 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/991 (34%), Positives = 524/991 (52%), Gaps = 43/991 (4%)

Query: 1   MQKE-NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M+K  + LFL+D  + IYRA +A     R    GL  +A+ GF N L ++LQ  +     
Sbjct: 1   MEKPIHKLFLLDAMALIYRAHFAFIKAPRITSKGLNTSAVFGFTNTLLEVLQKEK----P 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  V FD  A TFR+  +  YKA R   PE +   +PLV+   +   IP +E+ G+EAD
Sbjct: 57  THIGVAFDTAAPTFRHVQFEAYKAQREAQPEDITVAIPLVKRLLRGMCIPILELDGYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGI 174
           DII T    A +EGF V +++ DKD  QLV     +Y         E + ++ ++ +W I
Sbjct: 117 DIIGTIAKEASREGFEVYMMTPDKDYGQLVEQYIHIYKPAFLGKGAEVLGVQQILDRWQI 176

Query: 175 PP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
              ++++ +  L GD++DNIPGIPG+G KTA  L+QEY  +EN++ +A  IK  K  E I
Sbjct: 177 QRIDQVIDILGLMGDAVDNIPGIPGVGEKTAQKLIQEYDTIENLITHAGEIKG-KLGEKI 235

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-VATTY 292
            E  + A LS++L  +   VP+    E L +   N   +      LEF  L  R +    
Sbjct: 236 RENFDKAVLSKQLATIDCKVPVPFDAEDLTICSPNAELIAELFDELEFKTLKTRILGGQP 295

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              A  + P          K    + +I  + T +  Q  +        + E T     +
Sbjct: 296 GGSAGALSPRPASAQAPARKNAKGQLDIFGNPTEEIGQQPAAVS-GDLADGELTEDTSEI 354

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                          Y  +   + +      L    +  F   T ++D   ++ + ++ S
Sbjct: 355 RIPTSKRTIDNTFHRYHTVDTPELMTSLAHYLSLQDAFCFDTETTSLDTTDAELVGLSFS 414

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            L  +          +I +     Q         +EI+ Y +  FENE+  KIG NIKYD
Sbjct: 415 YLAGE--------AFYIPVPADRQQ--------AEEIVGYFRAVFENENIEKIGQNIKYD 458

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSS 527
            LVL  YGI + G   D ML  Y+L+  +  H +  +A  +L+Y    I     K     
Sbjct: 459 MLVLKNYGIEVHGKLSDTMLAHYLLEPDK-RHGMDILAASYLNYEPVSITSLIGKKGGKQ 517

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
             +  ++  ++ ++A E++++  QL  +   +L       ++  ++ P+  V++ ME TG
Sbjct: 518 GNMRDVAIPEITQYAGEDADITFQLHSIFSRELPKVNAAKLFNEVEMPLTKVLASMENTG 577

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646
           +++D + LK++SA +  +L   E  IY+ +G+ FN+SSPKQLG++LF K+K      KTK
Sbjct: 578 VRLDINALKEMSAVLESDLRQTESEIYEAAGQSFNISSPKQLGEVLFEKMKLIEKPKKTK 637

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ+  T +++      ++ I + IL++R+L K+KSTY D+LP  ++ RT R+HT Y+ A
Sbjct: 638 TGQY-ATGEEILSDLEANHLIARKILDYRELQKLKSTYVDALPTMVSSRTGRIHTSYNQA 696

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKIT 765
              TGRL+S  PNLQNIPI+T  G++IR+AF+      +++SADYSQIELRI+A  +   
Sbjct: 697 VAATGRLSSTNPNLQNIPIRTPRGREIRKAFVPDSADFQILSADYSQIELRIMAAFSGDA 756

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            + + F    DIH   A+++F V +E+V+  MRR +K +NF IIYGIS F LA +L IPR
Sbjct: 757 SMTEAFNQGRDIHATTASKVFQVPLEEVTSDMRRKSKMVNFGIIYGISAFGLAQRLGIPR 816

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA++ I+ YF  FP +  Y++K  N  R+  YVETI GRR +  +INS   + R   ER
Sbjct: 817 GEASEIIRAYFEEFPAVKGYMDKVVNDAREREYVETILGRRRYLPDINSRNQTNRGYAER 876

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AINAPIQGSAAD+ + AMI++H  +   KL ++M+LQ+HDELVF+    EI    + + 
Sbjct: 877 NAINAPIQGSAADMIKVAMINIHDFMAKEKLKSRMILQVHDELVFDAHYSEIDLLKERVD 936

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M  A    I + V ++  I V  NW E +
Sbjct: 937 ELMRNA----IPMAVRMETGIGVGANWLEAH 963


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/984 (35%), Positives = 526/984 (53%), Gaps = 70/984 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+DG + IYRA +A     R    GL  +AI GF N L ++L+        SH AV+
Sbjct: 2   KLFLLDGMALIYRAHFALSKSPRFTSTGLNTSAIMGFTNTLLEVLKKEN----PSHMAVV 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A T R+  +  YKA+R  +PE L   +P +    + F IP I + GFEADDII T 
Sbjct: 58  FDTEAPTERHTSFEAYKAHREAMPEDLAAAIPYIFRLIEGFNIPVITMDGFEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP-EKM 179
              AE+ GF V  ++ DKD  QLVS    +Y   +     E + ++ V++KW I   E++
Sbjct: 118 AKKAEQAGFEVFCMTPDKDYAQLVSDHIKIYKPARMGNGHEILGVKEVLEKWEIERVEQV 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L GD++DNIPGIPG+G KTA  L+Q++G++E I+ N+ ++K  K +ENI  YAE 
Sbjct: 178 IDILGLWGDAVDNIPGIPGVGEKTAKKLIQDFGSVEGIIANSDQLKG-KLKENIETYAEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             +S+KL  +  DVP+    E L++ + N   L      LEF  L  RV           
Sbjct: 237 GLISKKLATIILDVPVEFEAETLMIREANKDLLEPLFAELEFRTLGKRV----------- 285

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                            E  +  +      Q    S   S      TP           +
Sbjct: 286 --------------FGEEFNVVDNKVSAGGQMDLFSSGESA-----TPAPEATIPPAPGN 326

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                  SYT + + + + + +  L +  S  F   T   DA   + + ++ S       
Sbjct: 327 HIGNTEHSYTFVDSEEKLNELLALLASQKSFCFDTETTGTDANCCELVGLSFSVE----- 381

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              K +  ++  S                ++   K  FEN    KIG N+K+D LVL  Y
Sbjct: 382 ---KGQAWYVPAS--------ADQKEAHALVQQFKPVFENPAIGKIGQNLKFDILVLSWY 430

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKIS 534
            + + G   D ML  Y++D   + H +  +++ +L YT   I        K  + +  + 
Sbjct: 431 DVKVAGELFDTMLAHYLIDP-ETRHGMDVLSENYLGYTPVSITTLIGPKGKGQLNMRDVD 489

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V ++A E++++ LQL  +  P LI  +   +   ++ P++ V+  ME  G++ID   
Sbjct: 490 PKTVSDYAAEDADITLQLKEIFEPMLIKVEADKLAHEVEFPLVPVLVDMERVGVRIDVKA 549

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           L   S  I   +  LE  IY+ +G  FN++SPKQLG++LF KL+  P   KTKTGQ+  T
Sbjct: 550 LSDFSLAIQNEVQILEARIYEKAGVPFNIASPKQLGEVLFDKLQLDPKAKKTKTGQY-QT 608

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +D+       + I+++ILE+RQL K++STY D+LP  IN +T RVHT Y+ A   TGRL
Sbjct: 609 GEDVLMALANKSDIVQDILEYRQLQKLRSTYVDALPQLINTKTGRVHTSYNQAVAATGRL 668

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIPI+T+ G+++R+AFI+      ++SADYSQIELR++A I+K   +   F 
Sbjct: 669 SSNNPNLQNIPIRTERGREVRKAFIARDDEHVILSADYSQIELRLIAEISKDANMLDAFA 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             LDIH   AA+++GV +E+V+   RR+AK +NF IIYG S F L+  L IPR EAAD I
Sbjct: 729 KGLDIHTATAAKVYGVGLEEVTGNQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREAADMI 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           ++YF ++PGI +Y+  T  F +++GYVET+  RR +  +INS  +++R   ER AINAPI
Sbjct: 789 EQYFIQYPGIRDYMNNTIAFAKEHGYVETLLKRRRYLRDINSANATVRGFAERNAINAPI 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ + AMI +H+ ++   L  KM +Q+HDELVF+VP  E+    +II   M+ A 
Sbjct: 849 QGSAADLIKIAMIHIHQDIQQANLKGKMTMQVHDELVFDVPRNEVAAFKEIIEARMKGA- 907

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              +   VP+ V I    NW E +
Sbjct: 908 ---LKTEVPIVVEIGEGQNWLEAH 928


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/986 (35%), Positives = 531/986 (53%), Gaps = 66/986 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +   LFL+D  + IYRA +A     R    GL    I GF N L ++++  +     +H 
Sbjct: 2   RNKKLFLLDAYALIYRAHFAFAKNPRITSKGLNTGPIFGFTNTLLEVIKKEK----PTHL 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+  + DYKANR + PE +   +P ++   QA  IP +E  G+EADD+I
Sbjct: 58  VVCFDTKTPTFRHTEFVDYKANREEQPEDITLAVPYIKRLIQAMNIPCLEKDGYEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIPP- 176
            T    A K+ F V + + DKD  QLV     LY         E + +  V+ +WGI   
Sbjct: 118 GTLAKKASKDEFEVFMYTPDKDYGQLVDEHIFLYKPAFLGNGVEVMGVPEVLDRWGIKRI 177

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++V +  L GD +DNIPGIPG+G KTA  LL++Y  LE IL NA +I   K  E +   
Sbjct: 178 DQVVDVLGLMGDKVDNIPGIPGVGEKTAVKLLEQYDTLEGILENADKISG-KLGEKVRAG 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E+A +S+ L  + T+VPI    E  +L +  GP L      LEF  L +R+        
Sbjct: 237 KESALMSKWLAKIDTEVPIEFEEERFLLNEEYGPELAELFDELEFRTLKSRIFK------ 290

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                       T   G   ETE  +    +++Q +   D       + T      + L 
Sbjct: 291 -----------PTTETGTPNETEKPKPKAPESNQMNLFGDLEEVSEPQDTTLHTAKDVL- 338

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I   ++  + ++ L       F   T  +DA  ++ + ++ +   +
Sbjct: 339 ---------HDYYLISTPEERAELLEYLLAQEEICFDTETTDIDALDAQIVGLSFAYRPR 389

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          +I  S    +         K +L   K  FENE+  K+  NIKYD  +L
Sbjct: 390 E--------AFYIPFSPKFEE--------AKAVLIEFKPLFENENIRKVAQNIKYDLTIL 433

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
             YG+ ++G   D ML  Y+L+  +  H +  +A+ +LSY      +++   K  + +  
Sbjct: 434 ATYGVEVKGEIYDTMLAHYILEPDQ-RHGMDYLAETYLSYKPIPISDLIGKGKKQLNMRD 492

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   Q++E+A E++++ LQL  +L  ++       + + ++ P++ V+S ME TG++ID 
Sbjct: 493 VPLEQIKEYAAEDADITLQLKHVLDAQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDV 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWK 651
           + L  +S  + K+L   +E+I+ L+G +FN+ SPKQLG+ILF  +K      KT TGQ+ 
Sbjct: 553 EALHDLSNTLQKDLAKTQEDIFQLAGMEFNVGSPKQLGEILFEHMKIDEKPKKTPTGQY- 611

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            T +D+      D+ I++ IL++R+LSK+KSTY D+LP  I+KRT R+HT Y+ A   TG
Sbjct: 612 ATGEDILVNYEADHEIVRKILDFRELSKLKSTYVDALPTLISKRTGRIHTTYNQAVAATG 671

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIPI+T+ G++IR+AFI       ++SADYSQIELRI+A  +    + + 
Sbjct: 672 RLSSTNPNLQNIPIRTERGREIRKAFIPGGEEFTILSADYSQIELRIMADFSGDESMLEA 731

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N +DIH   A+++FGV++E+V+  MRR AK +NF IIYGIS F LA +L IPR EA +
Sbjct: 732 FDNGMDIHAATASKVFGVSLEEVNSDMRRKAKMVNFGIIYGISAFGLAQRLGIPRGEAKN 791

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  YF +FP +  Y+++T    R+  YVETI GRR +  +INS   + R   ER AINA
Sbjct: 792 IIDAYFTQFPKVKSYMDQTIEKARELEYVETILGRRRYLRDINSRNQTNRGFAERNAINA 851

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAAD+ + AMI +H  ++   L +KM+LQ+HDELVF+    E+    + I + M  
Sbjct: 852 PIQGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDELVFDAHHSEVEFLKEKIDYYMVN 911

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A    + L+V ++  I +  NW E +
Sbjct: 912 A----LPLKVKIETGIGIGKNWLEAH 933


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32]
          Length = 891

 Score =  882 bits (2280), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/980 (34%), Positives = 524/980 (53%), Gaps = 93/980 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++  L+L+DGSS+IYRA+YA   LS    G P NA+ GF  ML K++++ + +    H
Sbjct: 1   MPEKPKLYLIDGSSYIYRAYYAIRHLS-SPKGFPTNALYGFIQMLLKVVKDRKPD----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD   +TFRNEIYP YKANR  +P+ L  Q+  ++ A +AF IP +E+ GFEADDI
Sbjct: 56  LAVVFDAGKLTFRNEIYPAYKANRSAMPDDLRLQIEPIKEAVRAFRIPVLELPGFEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T     EK+G A  I++ DKDLMQ+V+ +  L DT+K++      V++++G+PPE++V
Sbjct: 116 IGTIACDCEKKGMAAVIVTGDKDLMQIVTDSVTLLDTMKDKASGPAEVVERFGVPPERVV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GDS DNIPGIPGIG                         +K   + I E+    
Sbjct: 176 DILALAGDSSDNIPGIPGIG-------------------------EKTAIKLIQEHHSLD 210

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +L                   L        ++   L+       ++R   T +C+     
Sbjct: 211 QL-------------------LENASVVKGKVGERLREFADQARLSRRLATIECN----- 246

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V +  +  +      +  +  D   +   F++L  + + + +                 
Sbjct: 247 -VPVPYSYGDFAASPPDNRLLGD-LFREYGFTTLMKELTSVAT----------------- 287

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +++D Y  I++  D    + KL T    +  + T +++ F ++ + I+ S  D     
Sbjct: 288 --LSSDDYRTILSAGDFSALMDKLGTQSIFAIDLETTSLNPFEAEIVGISFSFSDH---- 341

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               +  +I ++ H              +L  L+    +    KIG NIKYD  VL R G
Sbjct: 342 ----QAYYIPVAHHYL--GVPDQLSLAHVLQALRPLLLDPAIKKIGQNIKYDYQVLRRAG 395

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I M G   D ML SY+L+  RSSH + ++A + L +      ++  S K      ++   
Sbjct: 396 IEMEGIWCDTMLASYLLNPNRSSHGLNALAVELLDHKMISYADVAGSGKDQKNFAQVEVE 455

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   ++ E+++    L  L  P++    +  +   L+ P++ ++++ME+ G+++D  LL+
Sbjct: 456 KASIYSCEDADATWLLHKLFLPQIEESGMERLLFELEMPLVKILAEMELYGVKLDLVLLQ 515

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++SA     L  LE  I+  +G  FN++SPKQLG++LF  L+ P G KTKT    +T  D
Sbjct: 516 KLSAGFGSQLAELEREIFQCAGTTFNINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVD 575

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +    ++ I + IL++R LSK+KSTY D+LP  +   + R+HT Y+ A T TGRL+S 
Sbjct: 576 ELERLAAEHEIGRLILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYNQAVTNTGRLSSS 635

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI+++ G+ IR AFI+     ++SADYSQIELR+LAH+++       F    D
Sbjct: 636 EPNLQNIPIRSEEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDRVFCDAFAKDED 695

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AAE+FG+    V+P+MRR AKTINF +IYG  PF LA +L +    A ++I  YF
Sbjct: 696 IHTRTAAEVFGLFPGMVTPEMRRQAKTINFGVIYGQGPFSLAKELGVSTKVAKEFIDNYF 755

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R  G   +++         G+V TI GRR+   +INS   +IR+  +R AIN PIQGSA
Sbjct: 756 DRHAGARVFLDGCVREAEAKGHVTTILGRRLPIPDINSTNGNIRSFAQRNAINYPIQGSA 815

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI ++AM+ V   +    L +++++Q+HDELVFEVP EE  T  +++ H ME A    +
Sbjct: 816 ADIIKQAMVRVSGRMRREGLKSRLIMQVHDELVFEVPLEEKLTMEKLVCHEMENA----L 871

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPLKV++   +NW E +
Sbjct: 872 TLRVPLKVDVNFGSNWSEAH 891


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/985 (36%), Positives = 554/985 (56%), Gaps = 60/985 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+DG + IYRA +A     R    G+  +A+ GF N L ++L+        +H AV
Sbjct: 2   KKLFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLMEVLKKEN----PTHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A T R+  +  YKA+R  +PE L   LP +    + F IP I   GFEADDII T
Sbjct: 58  VFDTDAPTERHTDFEAYKAHREAMPEDLSAALPYIFKLIEGFRIPVITKDGFEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EK 178
               AEK+GF V  ++ DKD  QLVS    +Y   +     E + ++ V+ KW I   E+
Sbjct: 118 LAKEAEKKGFQVFCMTPDKDFAQLVSDNIFIYKPARMGNEMEIMGVKEVLAKWEIERVEQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +  L GD++DNIPGIPGIG KTA  L+++YG++ENI+ N+  +K  K+REN+  YAE
Sbjct: 178 VIDILGLWGDAVDNIPGIPGIGEKTAKALIKQYGSVENIIANSHELKG-KQRENVETYAE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              +S+KL  +  +VP+    + L LE+ +   L      LEF  +  RV          
Sbjct: 237 QGLISKKLATIILNVPVEFDEKALELEEPSRELLEPLFAELEFRTIGKRVF--------- 287

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                   N      ++ +T++  +   +T  +     QT        P+   LE  + L
Sbjct: 288 ----GEGFNRGATMVVSQQTDLFGNVVSETISYVETVVQT-------VPETTELEETKPL 336

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +     + +Y      +  ++ V  L    S SF   T   DA  ++ + ++ S    + 
Sbjct: 337 NTIENTSHNYQLANTPELRRELVDLLLKQESISFDTETTGTDANLAELVGLSFSIKPGEG 396

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I +          +    ++I+   +   ENE+ +KIG NIKYD L+L  
Sbjct: 397 --------YYIPVP--------AEMEAAQQIVEEFRPVLENENIVKIGQNIKYDMLILKW 440

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKI 533
           YGIS++G   D ML  Y++D   + H++  +++ +L+Y+   I        KS   +  +
Sbjct: 441 YGISVKGRLFDTMLAHYLIDPD-TRHNMDVLSENYLNYSPISITTLIGPKGKSQGTMRDV 499

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +V ++A E++++ LQL  +  P L       +   ++ P+I V++ +E  G++ID D
Sbjct: 500 PVEKVVDYAAEDADITLQLANVFEPLLKQLNAEKLATEVENPLIYVLADIEKEGVRIDMD 559

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKT 652
            L   S E+  ++   E+++YD  G KFNL+SPKQLG++LF KL+  P   KTKTGQ+  
Sbjct: 560 TLINYSKELELDIRKFEQSVYDKCGIKFNLASPKQLGEVLFDKLQLDPKAKKTKTGQY-Q 618

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +D+       + I+++IL++RQL K+KSTY D+LP  +N +T RVHT ++ A   TGR
Sbjct: 619 TGEDVLLALAHKSDIVQDILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSFNQAVAATGR 678

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIPI+T+ G+++R+AFI       L+SADYSQIELRI+A I+K   +   F
Sbjct: 679 LSSNNPNLQNIPIRTERGREVRKAFIPRDENHILLSADYSQIELRIIADISKEENMLDAF 738

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +N +DIH   AA ++G+ IE+V+P  RR+AK +NF IIYG S F L+  L IPR EAA+ 
Sbjct: 739 KNGIDIHTATAARVYGIAIEEVTPTQRRNAKAVNFGIIYGQSAFGLSQNLGIPRKEAAEI 798

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I++YF ++PGI  Y+  T NF R+NG+VETI GRR +  +INS   ++R   ER AINAP
Sbjct: 799 IEQYFTQYPGIKRYMSDTMNFARENGFVETILGRRRYLRDINSANQTVRGFAERNAINAP 858

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AMI++HK ++D  L +KM +Q+HDELVF+V + E+    +II H M+ A
Sbjct: 859 IQGSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELVFDVLKSEVEAMKKIIAHRMKTA 918

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               I   VP++V I    NW   +
Sbjct: 919 ----IKTTVPIEVEIGEGENWLAAH 939


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/988 (34%), Positives = 534/988 (54%), Gaps = 70/988 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + +  LFL+D  + IYRA +A     R    G+   A  GF N L ++L+  +     +H
Sbjct: 6   ESDKKLFLLDAMALIYRAHFAFSKTPRINSKGMNTGAALGFTNSLLEILKKEK----PTH 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A TFR+E +P YKA R + PE +   +P V+   +AF IP + + GFEADDI
Sbjct: 62  IGVAFDTSAPTFRHEEFPAYKAQREEQPEDIRVAIPYVKKIVEAFNIPVLIMDGFEADDI 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIPP 176
           I T    A ++GF V +++ DKD  Q+V+    LY         + + +E V KK+ I  
Sbjct: 122 IGTIAKQAGEDGFKVYMMTPDKDYAQMVTENVFLYKPAFMGNGVDVLGVEEVKKKFDIDR 181

Query: 177 -EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            E+++ +  L GD++DNIPGIPG+G KTA   L++YG++E +L +   +K  K +E +  
Sbjct: 182 VEQVIDILGLQGDAVDNIPGIPGVGAKTAIKFLKQYGSVEGLLEHTDELKG-KMKEKVEA 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS+KL  ++ DVP+    + L+L++ N   L    + LEF  ++ RV       
Sbjct: 241 NKEQALLSKKLATIKVDVPLAYEPDKLVLDEPNEEALRELFEELEFRTIMKRVL------ 294

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                            G            +  +Q S  +D   +   ++       E  
Sbjct: 295 -----------------GEEPSAPSKSSAKVDPAQMSMFTDTPEEAAQKE-------EEP 330

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           ++          Y  I   +  +  +  L       F   T  ++   ++ + +A S + 
Sbjct: 331 EERRTLANTKHQYHLIDTPELREDLITYLSIQDEFCFDTETTDLEPTDAELVGLAFSYVA 390

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++                 ++I    K+  ENE   KIG N+KYD  V
Sbjct: 391 GE--------AYYVPFP--------ADQKEAQKIADEFKEVLENEDITKIGQNLKYDIQV 434

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPI 530
           +  YG+ ++G   D ML  Y+LD   + H++  +A+ +L+Y        I K       +
Sbjct: 435 MRNYGVRVQGKMFDTMLAHYLLDP-ETRHNMDVMAENYLNYSPVSITDLIGKKGVKQGNM 493

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V E+A E++++ LQL  +L  ++    L  +   +++P+  V+++ME  G++I
Sbjct: 494 RDVPVEDVVEYAGEDADITLQLKHILEKEIKENNLESLLHDVEEPLSYVLAEMEYEGVKI 553

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D+D L ++S E+    L  +E I++L+G++FN++SPKQLG+ILF K+K      KTKTGQ
Sbjct: 554 DKDALSKMSKELETAALEAQEKIFELAGQEFNIASPKQLGEILFDKMKLVDKPKKTKTGQ 613

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  T +++      ++ I   ILE+R+  K+KSTY D+LP  I+K+  RVHT Y  A   
Sbjct: 614 Y-ATGEEILSKLANEHEIADKILEFREYQKLKSTYVDALPKLISKKDGRVHTDYRQAVAA 672

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G+ IR+AF+      +L++ADYSQIELRI+A  ++   + 
Sbjct: 673 TGRLSSNNPNLQNIPIRTEKGRLIRKAFVPRDENYQLMAADYSQIELRIMAAFSQDEAMM 732

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+N  DIH   AA++FGV+++ V P MRR AK +NF IIYGIS F LA  L I R+EA
Sbjct: 733 EAFKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKEVNFGIIYGISAFGLAQNLNISRTEA 792

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           +D IK YF  FP +H+Y+EK K   R N YV TI GR+    +INS   +IR   ER AI
Sbjct: 793 SDIIKAYFKEFPRVHDYMEKVKEDARANEYVTTILGRKRWLRDINSRNQTIRGYAERNAI 852

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAAD+ + AMI++HK +E   L +KM++Q+HDEL+F+  ++EI      +V  M
Sbjct: 853 NAPIQGSAADMIKIAMINIHKWMEKENLKSKMIMQVHDELIFDAHKDEIDKLKDKVVDLM 912

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           + A      L VP+++ + +++NW E +
Sbjct: 913 KNAM----ELDVPMEIGVGIADNWSEAH 936


>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002]
 gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002]
          Length = 887

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/946 (34%), Positives = 510/946 (53%), Gaps = 69/946 (7%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
             NML +L +  R +      A +FD    TFR+E+YPDYKANRP +PE L  Q+  V  
Sbjct: 1   MVNMLRRLEKEVRFDYS----ACVFDAKGKTFRDELYPDYKANRPSMPEELASQITAVHD 56

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
             QA G P + + G EADD+I T    AE  G  V + + DKD+ QLVSP   L +T+  
Sbjct: 57  VVQASGWPILVVDGVEADDVIGTLARQAEAAGMQVIVSTGDKDIAQLVSPVVTLVNTMTN 116

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
           E +D   V +K+G+PP  ++    L GD +DN+PG+   G KTA   L++YG+LE ++ N
Sbjct: 117 ETLDEGGVKEKFGVPPGLIIDYLTLIGDKVDNVPGVDKCGPKTAVKWLEQYGSLEAVMAN 176

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFL 276
           A+ I   K  +N+    +     R+L+ ++ DVP+   L    E L+  + + P+LI   
Sbjct: 177 AAAISG-KVGDNLRAALDWLPKGRELITIKCDVPLDAELPQGMETLLHRERDKPKLIELF 235

Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
               F   +                                 E+        +  ++ + 
Sbjct: 236 TRFGFRSWLR--------------------------------EVSDANGSAAADAAAPAS 263

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396
               +N E     LF       +        Y  ++    +  W+ KLE     S    T
Sbjct: 264 ANPGVNGE-----LFGAAEDDEAPAAAVERRYETLLTAAQLDAWLAKLEAAPVVSLDTET 318

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
            ++D   ++ + I+ S  + +          ++ L+ H +     +       L+ LK +
Sbjct: 319 TSLDQMEARLVGISFSVTEGE--------AAYLPLAHHYA--GVPEQLDLAATLARLKPW 368

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS- 514
            EN    K+G N+KYD+ VL  +GI++ G  +D +L SYV++S  + H++  +A++ L  
Sbjct: 369 LENPARKKLGQNLKYDRHVLANHGIALAGVADDTLLASYVIESHLT-HNMDDLARRHLGE 427

Query: 515 --YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
              + +EI       I   ++  +    +A E++++ L+L   L  KL   +L  VY  +
Sbjct: 428 STVSYEEICGKGAKQIGFAEVDIAVASNYAAEDADITLRLNRALAGKLEG-RLASVYRDI 486

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+ +V+  ME  G+ ID+  L + S ++   +L LE+  Y  +G+ FNL+SPKQL +I
Sbjct: 487 ELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLEQEAYQQAGQPFNLNSPKQLQEI 546

Query: 633 LFTKLKFPSG--AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           LF KL   +    KT +G + T    LEQ+   D+P+ K IL++R L+K+KSTY D LP+
Sbjct: 547 LFGKLGIDTKGVKKTPSGGFSTDESVLEQLAL-DHPLPKLILQYRGLAKLKSTYTDKLPS 605

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            I   T RVHT Y+ A  +TGRL+S +PNLQNIP++T  G+++R AFI+PP  +++SADY
Sbjct: 606 LIRPDTGRVHTNYAQAVAITGRLSSSDPNLQNIPVRTAEGRRVREAFIAPPGHRIVSADY 665

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELRI+AH++    +   F +  DIH+  AAE+FGV  E+V+ + RR AK INF +IY
Sbjct: 666 SQIELRIMAHLSDDANMLAAFASGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLIY 725

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G+S F LA QL I R+ A  YI RYF RFPG+ +Y+++T+   R+ GYVET+FGRR++  
Sbjct: 726 GMSAFGLAAQLDIERNAAQQYIDRYFMRFPGVADYMQRTREMAREQGYVETVFGRRLYLP 785

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           EI +     R+  ERAAINAP+QG+AAD+ + AMI+V + L    L +K+++Q+HDELV 
Sbjct: 786 EIRASNPGRRSGAERAAINAPMQGTAADLIKLAMIAVQRWLVAEGLGSKLIMQVHDELVL 845

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           EVPE E+    + +   M         L+VPL   +    +W+  +
Sbjct: 846 EVPEAELARVKERLPQIMAGVA----ELKVPLLAEVGAGESWEAAH 887


>gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/978 (35%), Positives = 528/978 (53%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPTMYDTE----YVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++YP+YKA+R  + + L  Q+  +    +  G P I   G EADD+I T 
Sbjct: 57  FDAKGKNFRHQLYPEYKAHRKDMDDELRVQIEPLHQIIKKMGFPVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+G+ + I + DKD+ QLV+    LYD++K    D+  V+KK+ I P++++   A
Sbjct: 117 AQNLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLKKYQISPQQIIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ + + +E L     +   LI                               
Sbjct: 236 QLATIKCDLELDLTVEDLKCRAADKAYLI------------------------------- 264

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                         E       K+      +D T  ++S+     + +E           
Sbjct: 265 --------------EAYTRYEFKSLLKDFDNDNTKMLSSQVQAASIAIE----------- 299

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S +F   TD+++ + +  + ++    + +       
Sbjct: 300 ---YIAITTQSQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +      +L  LK  F +    K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELGFVLDKLKPLFADVKKAKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HD+ S++++ L         I  + K    +D+I    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTAIAGTGKHQQTLDQIDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  ++ L  +Y  ++ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDETLYKLYCEIEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLD-VNSRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  SLDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQSLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G+ I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGIGIDEVSSEQRRKAKAINFGLIYGMSAFGLAKQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI V+   L+++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMIDVNTMILQEYNSEVKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 SVPLEVNVDAGESWDQAH 897


>gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15]
          Length = 868

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/938 (34%), Positives = 505/938 (53%), Gaps = 76/938 (8%)

Query: 45  LWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA 104
           +  +L+   ++   S   V+FD    TFR+++Y +YKANRP +PE L  Q+  +    +A
Sbjct: 1   MISMLRRLEQDFPGSKMVVVFDAKGKTFRHDLYEEYKANRPPMPEDLACQIEPIHEIVKA 60

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID 164
            G+P + + G EADD+I T    A  +G  V + + DKD+ QLVS    L +T+ E ++D
Sbjct: 61  MGLPLLTVTGVEADDVIGTLANEATSKGIDVVVSTGDKDMAQLVSDHVTLINTMTETRMD 120

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            + V++K+G+ PE++V   AL GD +DNIPG+   G KTA   LQ Y NL+N++ +A  I
Sbjct: 121 RDGVVEKFGVTPEQIVDYLALVGDKVDNIPGVNKCGPKTAVKWLQSYDNLDNVIEHADEI 180

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           K  K  E + +  ET  LSR+L  +RTDV +   LE L L + +  +L+   +  EF   
Sbjct: 181 KG-KIGEYLRDATETLPLSRELATIRTDVELDFGLEDLKLREQDDQQLLELFREYEFRSW 239

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           I  +       ++N                                             +
Sbjct: 240 IAELEEDESSSSSN-----------------------------------------ARAGD 258

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
           +TP+    E+             Y+ I + K++ QW+++L      +F   T ++    +
Sbjct: 259 ETPKPETGEK------------DYSIITDQKELDQWLERLGAAELFAFDTETTSLRYMDA 306

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
           + + ++ +    +          ++ L          +     ++L  LK   EN    K
Sbjct: 307 EIVGVSFAVKPGE--------AAYVPLGHDYM--GAPEQLDRDQVLDQLKPLLENPDLAK 356

Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEI 520
           +G N+KYDK VL  +GI++ G   D ML SYVL+S  + HD+ S+A  +L       + I
Sbjct: 357 VGQNLKYDKNVLANHGITLEGIAEDTMLESYVLNSVATRHDMDSLAMYYLGEKTTSFESI 416

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDV 579
                  +  ++I   +   +A E++++ L+L   LRPKL    KL  VYE +D P++ V
Sbjct: 417 AGKGAKQLTFNQIDLEKAAPYAAEDADITLRLHQTLRPKLKETGKLAAVYEDIDLPLVPV 476

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +S+ME  G  I    L+Q S E+++ +  LE+  ++++GE FNL S KQL  I + K+  
Sbjct: 477 LSRMEQRGTLISASTLRQHSQELAERMAELEKEAHEVAGETFNLGSTKQLQAIFYDKMGL 536

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   K +  + +  ++     N   N   + ILE R LSK+KSTY D+LP  I+ RT RV
Sbjct: 537 PVIKKPQRARRQQRSRCF--RNSPTNTNCRVILEHRSLSKLKSTYTDTLPELIHHRTGRV 594

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT Y  A T TGRL+S EPNLQNIPI+++ G++IR+AFI+P   KL++ADYSQIELRI+A
Sbjct: 595 HTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRRIRQAFIAPEGYKLVAADYSQIELRIMA 654

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H++    L + FE   DIH+  A+E+FGV+++ VS   RR AK INF +IYG+S F L+ 
Sbjct: 655 HLSGDKGLLKAFEKGEDIHKATASEVFGVSLDDVSSDQRRSAKAINFGLIYGMSAFGLSR 714

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL + R  A +YI RYF R+PG+ +Y++  +     +G+VET+FGRR++  EIN+    +
Sbjct: 715 QLDVERKLAQEYIDRYFERYPGVLKYMDNIRKQAHDDGFVETLFGRRLYLPEINARNKQL 774

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +   ER AINAP+QG+AADI +RAM+ V    L++H    +M +Q+HDEL+ EV E  + 
Sbjct: 775 QQAAERTAINAPMQGTAADIIKRAMVDVENWLLKEHADEARMTMQVHDELILEVKESALD 834

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                +   M  A      L VPL V   V +NW E +
Sbjct: 835 KIRSGLEKRMSAAA----ELDVPLLVEAGVGDNWDEAH 868


>gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
 gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
          Length = 942

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/989 (32%), Positives = 536/989 (54%), Gaps = 60/989 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  LFLVD  + I+R +YA     R    G   +AI GF N L+ +++    +    
Sbjct: 1   MASKKRLFLVDAYAMIFRGYYALIKNPRINSKGQDTSAIMGFMNSLFDVIKRENPD---- 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD      R E+Y +YKANR   P ++   +P+++    A  IP +EI G EADD
Sbjct: 57  HLAVCFDKDGSKDRKEMYVEYKANRDATPTVIKDSIPIIQDILHAMEIPVVEISGMEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T    AEK+ + V +++ DKD  QLV+    +    +     EK  I  V KK+G+ 
Sbjct: 117 IIGTLAIQAEKQNYEVHMVTPDKDFAQLVTENIFMQRPARMGNGVEKWGIPEVQKKFGVE 176

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++    + GD+ DNIPG+PG+G KTA   LQ++G++E +L N  ++K  K +E I 
Sbjct: 177 RPEQVIDFLGMMGDAADNIPGLPGVGEKTAKKFLQQFGSMEVLLENTDQLKG-KMKEKIE 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           + AE  RLS++L  + TD  +T       +   N  +++   K LEF +L  +    Y+ 
Sbjct: 236 KNAELGRLSKRLATIITDCDVTFDEVKYEVSPPNVEKVLDIFKELEFRRLTEQFVKMYNK 295

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
             A +E    + +++     A              QFS   + T   N E +        
Sbjct: 296 GEAIVEKPSQNTSSSPQTAGA-------------GQFSLFGNDTDVSNIEPS-------H 335

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                     +  Y  +     ++ +++ L    S  F   T ++    ++ + IA S  
Sbjct: 336 FDGYKTLKSTDHHYQYVKGGLSLKLFIEILMKQNSVCFDTETTSLKTLDAELVGIAFSWE 395

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K                             +E++  L+ FFE+    K+G N+KYD  
Sbjct: 396 SHKG----------------FYVAFPEDQNEAQELVEKLRPFFESTEIEKVGQNLKYDIK 439

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIP 529
           VL  Y + ++G   D ML  Y+++     H++  +A+ +L+Y+ + I     K  K    
Sbjct: 440 VLANYKLKVKGPLFDTMLAHYIINPDM-RHNMNILAETYLNYSPQPIEDLIGKKGKRQKT 498

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +S     ++A+E++++  QL      +L       +++ ++ P++ V++ MEI GI 
Sbjct: 499 MRTVSLEDQTQYAVEDADITFQLKTYFEKELKEASNEPLFKDMEIPLLRVLAAMEIEGIN 558

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +D+  L+ +S ++ +++  LE+++Y  +  +FN+ SPKQLG+ILF KL+      KTK+G
Sbjct: 559 LDKSALENISEKLDEDIERLEKSVYVEAEGEFNIGSPKQLGEILFGKLEIAKKPKKTKSG 618

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+  T +++      D+ I++ +LEWRQLSK+KSTY D+LP  I+ RT+RVHT +     
Sbjct: 619 QYS-TGEEVLSNYAKDHKIVREVLEWRQLSKLKSTYVDALPKQIHPRTKRVHTEFMQTVA 677

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQNIPI+T+ G+++R+AF+       L++ADYSQIELRI+A +++   +
Sbjct: 678 ATGRLSSNNPNLQNIPIRTERGREVRKAFVPRDENYVLLAADYSQIELRIIAALSQEKTM 737

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F+N  DIH   AA +FGV+IE+V+   R +AKT+NF IIYG+S F L+ Q  + R+E
Sbjct: 738 MNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTVNFGIIYGVSAFGLSNQTDLTRNE 797

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           + + I+ Y+  +P + +Y+++   F +++GYV+T+ GRR +  +IN+    +R+  ER A
Sbjct: 798 SKELIETYYKTYPKLRDYMDEQVEFAKEHGYVKTVMGRRRYLKDINAKNHIVRSAAERNA 857

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI+++ +LE+    +KMLLQ+HDEL+F+  ++EI   + ++   
Sbjct: 858 VNAPIQGSAADIIKVAMINIYDALEEQNFKSKMLLQVHDELIFDAHKDEIDALTALVKDK 917

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME A      L VPL V +    NW E +
Sbjct: 918 MENA----FKLDVPLDVEMGTGQNWLEAH 942


>gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
 gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
          Length = 988

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/999 (34%), Positives = 532/999 (53%), Gaps = 70/999 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +    LVDGS +++R ++A P   +   GL  NAI G  N L KL++        +H 
Sbjct: 36  KNQPPFILVDGSYYLFRTYHALPKTMQNSQGLVTNAIRGTLNALLKLMRRYH----PTHM 91

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  + TFR+ +  +YKANRPK+   L  Q+P +     A GIP + I+G EADDII
Sbjct: 92  AVCFDTKSPTFRHAMSEEYKANRPKMDIELAEQIPYIHRLVTALGIPLLRIEGAEADDII 151

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A  EG  V I + DKD+MQL++    L D+   +  D   V++K+GI PE+M+ 
Sbjct: 152 GTLAYRAVAEGHHVVISTGDKDMMQLINDCVILEDSFTGKMTDSAGVVEKFGINPEQMID 211

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L GDS D I G+PGIG KTA  LL EYGN++N+L N + IK  +  +N+LEYA+   
Sbjct: 212 FLTLMGDSSDGIKGVPGIGKKTAKDLLNEYGNIDNMLKNVANIKG-RAGKNLLEYADDIP 270

Query: 242 LSRKLVMLRTDVPITIPLEHLIL---EDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           ++ +L  + TD+ +    + L +      +   L      LEF                 
Sbjct: 271 MNAQLATIVTDLEVGQDWQDLKINTDPCAHINELRELYSELEFRN--------------- 315

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E   LD       G    T+    +            Q    +  Q  + L    +  +
Sbjct: 316 -ELASLDHPNHPANGNGHGTQSVAHS------------QADAESQAQIAKSLQSSTIGDI 362

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   I++ ++  I++       VQ L +         T ++    ++ + ++ +    + 
Sbjct: 363 TDSKIHDRAWHTILDESAFDNLVQLLASAPHFVIDTETTSVYWRQAELVGLSFAVQAHE- 421

Query: 419 DTSFKVETIFIDLSVHTSQDST-GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    +I L+     D    K      +L+ LK   EN +  KIG ++KYD  +L 
Sbjct: 422 -------AYYIPLTHALEGDELIAKQLDRDTVLARLKPILENPNIGKIGQHLKYDAHILS 474

Query: 478 RYGISMRG---------FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRK 525
            Y I++ G           D ML SYV+++  + H +  +A+ +L     + +++     
Sbjct: 475 LYDINLLGNIHDKPNNWAMDTMLASYVINAAITRHGMDDLARHYLQTQTISFEDVAGKGA 534

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQME 584
             +  D+++     ++A E++++  QL+ L   KL  +     +   L+ P  +++ QME
Sbjct: 535 KQVSFDQVAIDIASDYACEDADITYQLFDLFSKKLADDTNNAKLLHELEIPTAEILCQME 594

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI I +  L ++S    + +++LE+  Y+++GE+FNL SPKQLG++LF KL    G K
Sbjct: 595 ANGILIRRPFLNELSKRFDEEIIALEKRAYEVAGEEFNLGSPKQLGEMLFDKLGVVGGKK 654

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQ+ T       ++  D+P++   LE+R LSK+KSTY D+L N  + +T RVHT Y 
Sbjct: 655 TKTGQYSTGEAV---LSKIDHPLVDITLEYRGLSKLKSTYTDALDNVADAKTDRVHTSYH 711

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A T TGRL+S +PNLQNIPI+T  G+ IR+AFI+P  + +++ADYSQIELR++AH +  
Sbjct: 712 QALTSTGRLSSTDPNLQNIPIRTATGRLIRQAFIAPEGRVILAADYSQIELRLMAHFSGD 771

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F   LDIH   AAE+ G  + +V+   RR+AK INF ++YG+S F LA QL++ 
Sbjct: 772 KNLTHAFNEGLDIHAATAAEVLGKEVAEVTATERRNAKAINFGLLYGMSAFGLAKQLQMS 831

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           RSEA DYI  YF R+PG+ +Y+  T+    ++GY+ETI GR+++  +IN     ++   E
Sbjct: 832 RSEAQDYIDMYFERYPGVKDYMINTRASAYEHGYIETILGRKLYTPDINHSNRMVKQGAE 891

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAAINAP+QGSAAD+ + AMI+V K L   +   KMLLQ+HDELVFEV  +++   SQ+I
Sbjct: 892 RAAINAPLQGSAADLIKLAMIAVDKVLPKEQ--AKMLLQVHDELVFEVDADKVDEISQLI 949

Query: 945 VHSMEKAC-------LPKINLRVPLKVNIKVSNNWQEEN 976
            ++M+             +N  VPL V      NW E +
Sbjct: 950 TNAMQDVLTATAVEKGWNVNFAVPLLVETDSGQNWDEAH 988


>gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12]
 gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 923

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/979 (35%), Positives = 526/979 (53%), Gaps = 66/979 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+         + A + 
Sbjct: 3   KLVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVI 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+ +  +YK +RP +P+ L  Q+  +     A GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDALDSEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIHGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-HVIKKWGIPPEKMVCLQA 184
             A  +G AVTI + DKD  QLV P   L +T+   ++D    VI K+G+ P++++   A
Sbjct: 117 LAAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS+DN+PG+   G KTAA  L EYG+L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKG-KIGDNLRVVLPRLLLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L+ ++TDV +    + L L + +   L  F +   FT+ +  +      D  ++   V 
Sbjct: 236 ALITIKTDVVLEKRPQDLALRERDTEALRDFYQRYGFTQALKEL------DGGSVAVTVA 289

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           +      +        D    ++ +   S   +                           
Sbjct: 290 EQEPGRGRDAGFHVAPDASVAMEINPALSAPGE--------------------------- 322

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I   + +Q W+ +L   G  +    TD++D   +  I ++ ++ +         
Sbjct: 323 ---YETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFAS-EVGCAAYLPF 378

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +    V   +                    E+    K+G + KYD  VL RYGI + 
Sbjct: 379 GHDYPGAPVQLDRGQALALLQPLL---------EDAAVRKVGQHGKYDMHVLRRYGIVLA 429

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL SG + HD+ ++A++ L Y      +++      IP   +   +  +
Sbjct: 430 GYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEATQ 489

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L PKL+ E  L  VY  ++ P++ V+ ++E  G+QID + L + S
Sbjct: 490 YAAEDADITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQS 549

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++S+ ++  ++   DL+G  FNL SPKQL  +LF +LK P   KT  GQ   T ++  +
Sbjct: 550 ADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPS-TNEEALE 608

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K+++TY + LP  I+  T RVHT Y  A   TGRL+S +PN
Sbjct: 609 AIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN 668

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+TD G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+ +D+H 
Sbjct: 669 LQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHC 728

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            +AAE+FG  I++V+P  RR AK INF +IYG+S F LA QL I R EA DYI  YF RF
Sbjct: 729 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ +++E T+   R  GYVET+FGRR++ + I S   + R   ERAAINAP+QG+AADI
Sbjct: 789 SGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848

Query: 900 TRRAMISVHKSL--EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
            +RAM++V   L    H+    M+LQ+HDELVFE  E  + T    +   M  A      
Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAAA----Q 904

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           LRVPL V++ V ++W E +
Sbjct: 905 LRVPLVVDVGVGHHWDEAH 923


>gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
 gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
          Length = 851

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/902 (35%), Positives = 502/902 (55%), Gaps = 63/902 (6%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +P+ L  Q+  +    +A G+P + I+G EADD+I T    A + G  V I + DKD+ Q
Sbjct: 1   MPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQ 60

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           LV     L +T+    +D E VI+K+GIPPE ++   AL GD +DNIPG+PG+G KTA  
Sbjct: 61  LVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATA 120

Query: 207 LLQEYGNLENILINASRI------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
           LLQ  G LE +  N  +I        K   + + E    A+LS +L  ++ DV +    +
Sbjct: 121 LLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQ 180

Query: 261 HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEI 320
            L+ +  +   L+S    L F   +  +                           ++   
Sbjct: 181 TLLKQTPDRDALMSLYGKLAFKSWLTEL---------------------------LDGGT 213

Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW 380
              T  + ++ SS++  T+  ++   P+              I+   Y  I+N +D Q W
Sbjct: 214 GIVTADEQTKTSSVTVSTAATHAAAIPE---------SPAAHIDRSQYQTILNEQDFQLW 264

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           ++KL+     +F   TD +D   +  + ++ +  +  +     V   ++D      +D  
Sbjct: 265 LEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEG-EAAYLPVAHDYLDAPQQLERD-- 321

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG 499
                   +++ LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S 
Sbjct: 322 -------WVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSV 374

Query: 500 RSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
              HD+ S+A ++L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   +
Sbjct: 375 GGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRI 434

Query: 557 RPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
            P +  + KL  VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+N Y+
Sbjct: 435 HPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYE 494

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           L+G+ FNLSSPKQL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R
Sbjct: 495 LAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYR 553

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            L+K+KSTY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+
Sbjct: 554 GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQ 613

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF++P   K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS 
Sbjct: 614 AFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSS 673

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + RR AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q
Sbjct: 674 EQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQ 733

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYVETIFGRR+H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E   
Sbjct: 734 LGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREG 793

Query: 916 LA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               K+L+Q+HDELVFEV E  ++     +   ME A      L VPL       +NW++
Sbjct: 794 DGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQ 849

Query: 975 EN 976
            +
Sbjct: 850 AH 851


>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
 gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
          Length = 948

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/994 (33%), Positives = 527/994 (53%), Gaps = 78/994 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             +    LVDGS +++R F+A P+  +   GL  N+I G  N L KL++  R     +H 
Sbjct: 14  TDKPPFILVDGSYYMFRNFHALPVTMQTTQGLHTNSIRGTLNALKKLMEKYR----PTHM 69

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+++ P YK +RP++P  L  Q+P +    QA GIP + I+G EADDII
Sbjct: 70  AVAFDTKAPTFRHKLSPIYKGDRPEMPAELAEQIPYIHKMIQAMGIPLLAIEGVEADDII 129

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  + A  EG  V I + DKD+ QLV+P   + ++  +++ DI  V +K+G+ P +++ 
Sbjct: 130 GTLAHRACLEGHHVIISTGDKDMCQLVNPCVIVENSFDDKRYDIAGVKEKFGVEPRQIID 189

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L GD+ D I G+ GIG KTA  LL++Y +++NIL N  ++K  K+++  L+  ++  
Sbjct: 190 YLTLMGDASDGIKGVAGIGAKTAQKLLEQYDSIDNILANVDQLKG-KQQQTFLQSTDSIA 248

Query: 242 LSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           L ++L  + TD+ I    E L L      N     +    LEF   I  +   +      
Sbjct: 249 LDKRLATIITDLDIVPDWETLRLPTDPSFNIEEKRAIFTELEFKSEIASLNHPF------ 302

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                       N G     E  ++  ++  + S  S  T+                   
Sbjct: 303 ---------HPSNNGNFKAAESAQNAVVEAIKTSQDSKNTA------------------- 334

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                 N  +  +    D    +Q+L           T  ++  H++ + ++ +    + 
Sbjct: 335 ------NKQWHTVTTQADFDTLIQRLGASKHFVIDTETTDVNWQHAELVGLSFALQSHE- 387

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ ++      +  +    +++L+ LK   +N    KIG ++KYD  +L  
Sbjct: 388 -------AYYVPVAHVDEMGNRIEQLTREDVLAQLKPILQNPQIGKIGQHLKYDAHILAN 440

Query: 479 YGISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPI 530
           Y I++         D ML SYV+++  + H +  +A+ +L     T +++       I  
Sbjct: 441 YHINLINEPSNWAMDTMLASYVINAVATRHGMDDLARHYLHTQTITFEDVAGKGAKQITF 500

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           DK+  +   ++A E++++  QL+ L   KL  E     +   L+ P+  ++ QME  GI 
Sbjct: 501 DKVPLTVASDYACEDADITYQLFELFSEKLKAEPNNAKLLHELEIPVAQILCQMEHDGIL 560

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +++  L ++SA   + + +LE   +  +GE FNL+SPKQLG++LF +L    G KTKTGQ
Sbjct: 561 LNKAFLGELSARFDEKIQALETVAFAQAGETFNLASPKQLGEVLFDRLGITGGKKTKTGQ 620

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      +   D+P+I+ +LE R LSK+KSTY D+L N +     RVHT Y  A T 
Sbjct: 621 YSTSEAV---LATIDHPLIETVLEHRSLSKLKSTYTDALAN-VADSNDRVHTSYHQALTT 676

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S EPNLQNIPI+TD G+ IR AFI+P  +K++SADYSQIELR++AH A    L +
Sbjct: 677 TGRLSSTEPNLQNIPIRTDTGRLIRGAFIAPKGRKVLSADYSQIELRLMAHFANDPVLIR 736

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   DIHR  AAEI G   + V+ + RR AK +NF ++YG+S F LA QL   R +A 
Sbjct: 737 AFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVNFGLLYGMSEFGLAKQLGFTRQQAQ 796

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIK YF R+P +  Y++ T+   +  GY+ TI GR++   ++  P   +R   ERAAIN
Sbjct: 797 DYIKLYFARYPTVRAYMQATRTAAQNQGYITTILGRKLFTPDMQHPNRGVRQAAERAAIN 856

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAADI + AMI+V++ L       KMLLQ+HDELVFE  E++    +++I ++M+
Sbjct: 857 APLQGSAADIIKLAMIAVNEVLPTEH--AKMLLQVHDELVFEADEDKAEAIAELIKNAMQ 914

Query: 950 KAC-------LPKINLRVPLKVNIKVSNNWQEEN 976
           +            ++  VPL V + + +NW E +
Sbjct: 915 EVLSKTAKDKGWDVDFAVPLVVEVGIGDNWDEAH 948


>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
 gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
          Length = 950

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/986 (35%), Positives = 534/986 (54%), Gaps = 78/986 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +K+  L+L+DG + +YRAFYA      R  DG+P  A+ GF + L ++++  + E    +
Sbjct: 32  KKKPGLYLLDGMAMVYRAFYALQQARMRTRDGVPTGAVFGFASSLLRIIEEYQPE----Y 87

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD P  TFR+E Y  YKANRP  P+ L+ QL  +R   +AFGIP + + GFEADD+
Sbjct: 88  LAVAFDSPEKTFRHEKYEAYKANRPAPPDDLITQLADIRELIKAFGIPLVIMPGFEADDL 147

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T     E +   V I++ DKD+ QLV     L    K+    E +    V +++G PP
Sbjct: 148 IGTAARKFEDD-CQVFIVTPDKDMSQLVHDGVRLLKPGKKQNEFELVGSREVAEQFGAPP 206

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+ + L  LTGD+ DNIPG  GIG KTA+ LL+EYG+L+NI  +   +K  + R+++ E+
Sbjct: 207 EQFIDLLTLTGDTSDNIPGAKGIGPKTASSLLEEYGSLDNIYAHLDDLKP-RARKSLEEF 265

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E   L R+LV +RTD+ + + L+ L     +   L + L+ LE   +  RV      D 
Sbjct: 266 REIMPLVRELVTIRTDLDVPLTLDDLHSGKPDADALFALLRRLELKAIAARVPAALGIDP 325

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                T  D ++  + S+ S+           +           
Sbjct: 326 P------------------AATATDGESDPEASEVSAEPTLIPAGEGSE----------- 356

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I   +   + ++KLE   S S    T ++D F ++   I+ S    
Sbjct: 357 -----------YHLIDTEEAFGKLLEKLEQADSFSVDTETTSLDTFEAELAGISFSLEPG 405

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +    +  ET                    K  ++ LK   EN    K G N+KYD LVL
Sbjct: 406 EAFFVYFGETG----------------LDAKTTVAKLKPLLENPEIGKTGQNLKYDILVL 449

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
             YG+ ++    D ML SYVLD   S H++  +A   LS       E++ + KS+I I +
Sbjct: 450 KNYGVELQPVEFDTMLASYVLDP-ESRHNLDDMAALHLSRQTVKYDELVGTGKSAIGIFE 508

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +   ++ ++A +++++ L+L   L  KL    +LL V   L+ P++ V++ ME  G+ ID
Sbjct: 509 VEPQKLSDYACQDADITLKLRGELAAKLEATPELLEVCRTLEFPLVRVLADMEHQGVSID 568

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + L +++ ++++ L+ L E I++ +GE FN+ SPKQLG ILF  LK P+   TKTG + 
Sbjct: 569 TEHLAKLAVKVNEELVGLTERIHEAAGETFNIDSPKQLGHILFDVLKLPTKKATKTG-YS 627

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  Q LE++    NPI   +LE+R L K+K TY ++LP  ++  T R+HT ++ + T TG
Sbjct: 628 TNVQVLEELALL-NPIAAEVLEYRSLQKLKGTYIEALPKLLHAATGRLHTSFNQSITATG 686

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIPI+TDLG++IRRAFI   P   L+SADYSQIELR+ A ++    L + 
Sbjct: 687 RLSSSNPNLQNIPIRTDLGKEIRRAFIPSNPENLLLSADYSQIELRVAAELSGDPMLIEA 746

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N  DIH   A  IF  + ++V+  MRR AK +NF ++YGI PF L+ +L IP+ EA +
Sbjct: 747 FRNHEDIHAATARVIF--DTDEVTSDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAKE 804

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  Y  ++PG+   ++ T    R+ GYV T+ GRR +  ++NSP  +IR   ER  +N 
Sbjct: 805 IIDTYMAKYPGMFSALQTTVEEARKLGYVTTLMGRRRYVPDLNSPNGNIRKAAERVTMNT 864

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AM ++ + L++ +L + MLLQ+HDEL+FE P +E +  ++++   M  
Sbjct: 865 PIQGTAADIIKYAMCTISRRLKEERLNSVMLLQVHDELLFETPADEQSRLTELVEKCMVD 924

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A        VP++V   V  NW E +
Sbjct: 925 AASKCGVRNVPVEVETGVGKNWLEAH 950


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/986 (32%), Positives = 527/986 (53%), Gaps = 42/986 (4%)

Query: 5   NHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFLVD  + I++ +YA      R   G+  + + GF     K L++ +K        V
Sbjct: 2   KKLFLVDAYALIFKYYYAFMGRPMRNRAGMNTSVVFGFT----KFLRDIQKREHPDLLGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR EI+P+YKANR + PE +L  +P V+   +A  IP +E+ G+EADD+I T
Sbjct: 58  AFDPKGGSFRREIFPEYKANRAETPEDILLSVPYVKRIVEAMCIPVLEVPGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMV 180
             +   + G+ V +++ DKD  QLV     +Y        E +  E + +K+GI   ++V
Sbjct: 118 LAHKGVEAGYDVFMVTPDKDYGQLVCDNCKIYKQKGNDGIEIVGREAIREKYGIENPQLV 177

Query: 181 -CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL GD+ DNIPG+PGIG KTA  L+QE+G +ENIL NA RIK  ++ E I E+ + 
Sbjct: 178 RDILALWGDASDNIPGVPGIGEKTACKLVQEWGTVENILQNADRIKS-RQGEKIAEWGDK 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             L+++L  +  DVPI    E L +       L +    L+F   +N +      +    
Sbjct: 237 LLLAKRLTTICLDVPIDFREEDLTVCAPRIDELKALFAELDFRMFLNDLTNLAPAEPLPE 296

Query: 300 EP-VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD--QTSKINSEQTPQKLFLERLQ 356
            P         E                +   F+  +D  ++   + E           +
Sbjct: 297 GPRQAAQTQLAEVARAKSAAAKKAALAGQGDLFAPAADSGESPASDRESASSDEQTAESE 356

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + +       +YT + N ++++  ++++       F   T   D F+ + + ++++    
Sbjct: 357 EFATAQTTPHAYTIVRNAQELEAVLREVAACPEFCFDTETTGFDIFNDRIVGLSLAVRPY 416

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          +I  +             T E  + ++  F +    KIG NIK+D +VL
Sbjct: 417 E--------AWYIPFNESN----------TAEYAALIRPLFADGKIAKIGQNIKFDLMVL 458

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
            R G+ +RG   D M++ Y+LD   S H++ ++A ++L+Y       ++      + +D 
Sbjct: 459 ARLGVEIRGRLYDTMILHYLLDP-ESRHNMDALAMRYLNYRPISITSLIGKGARQLTMDM 517

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           IS  +V E+A E+++V L+L  +L PK+    L  +Y  +++PMI V++++E+ G++ID 
Sbjct: 518 ISLERVAEYAAEDADVTLRLKQVLWPKVEELDLAGLYLEIEEPMIAVLAEIEMAGVRIDS 577

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           + L + + E++K L  LE +I  L+ E   N++S +QLG++LF KL+     K    +  
Sbjct: 578 EALAEYAVELNKTLNDLEGDIRRLADEPSLNVNSARQLGEVLFGKLRIAEKPKMTKTKQF 637

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T ++  Q       I+  ILE+R + K+ STY ++LP  +N  T ++HT ++ A T TG
Sbjct: 638 STEEEYLQTFAHKYEIVDKILEYRGVKKLLSTYVEALPLLVNPVTGKIHTSFNQAVTATG 697

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIP++ +LG++IR+AFI       L+SADYSQ+ELR++AH++    L   
Sbjct: 698 RLSSTNPNLQNIPVRDELGRRIRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLIAA 757

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           FE+  D+H   AA +FG  + +V    RR AKT NF IIYGIS F L+ +L IPR EA +
Sbjct: 758 FEHGEDVHAATAARLFGKEVAEVDSDERRKAKTANFGIIYGISAFGLSQRLDIPRKEAKE 817

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I+ YF  +P + EY+++     +++GYV TIFGRR + ++I S  +  R + ER A+NA
Sbjct: 818 IIEGYFASYPKVKEYMDRVVEEAKRDGYVSTIFGRRRYLNDIASRNAVARGLAERNAVNA 877

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI V +   +  + +K++LQ+HDELV ++   E      I+  +ME 
Sbjct: 878 PIQGSAADIMKIAMIRVSRRFREEGIRSKVILQVHDELVVDMLRSEQERVIAIVTEAMES 937

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A      LRV L V+  V +NW E +
Sbjct: 938 AAA----LRVRLVVDCGVGDNWLEAH 959


>gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1]
          Length = 959

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/994 (35%), Positives = 542/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 28  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 82

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 83  AVAFDTKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 142

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 143 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIAD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 203 YLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ +TI  + + L+          P L +  + LEF K + + A   +  
Sbjct: 262 LNRILATIVTNLKLTISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP 321

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  V  I+  +N                     +LS QT  +              
Sbjct: 322 HQPTDKAV-SIDIHDN---------------------TLSSQTPIL-------------- 345

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 PI + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 346 ------PIKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 399

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 400 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 451

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 452 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 511

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 512 DKVAMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGIL 571

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 572 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 631

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 632 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 687

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 688 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 747

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 748 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIGVDRAVAQ 807

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 808 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 867

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 868 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQ 925

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VPL V I +  NW++ +
Sbjct: 926 NALTDTAKKLGWAVDFAVPLVVEIGIGENWEQAH 959


>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c]
 gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c]
          Length = 923

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/979 (34%), Positives = 524/979 (53%), Gaps = 66/979 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P LS    G P  A+ G  NML   L+         + A + 
Sbjct: 3   KLVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVI 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+ +  +YK +RP +P+ L  Q+  +    QA GI  + I G EADD+I T  
Sbjct: 57  DAPGKTFRDALDSEYKMHRPPMPDDLRVQVEPMCGIVQALGIDILCIDGVEADDVIGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-HVIKKWGIPPEKMVCLQA 184
             A  +G AVTI + DKD  QLV P   L +T+   ++D    VI K+G+ P++++   A
Sbjct: 117 LAAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+   G KTAA  L EYG+L+ ++ NA +IK  K  +N+        L+R
Sbjct: 177 LMGDAVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKG-KIGDNLRVVLPRLLLNR 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L+ ++TDV +    + L L + +   L  F +   FT+ +  +      D  ++   V 
Sbjct: 236 ALITIKTDVVLEKCPQDLALRERDTEALRGFYQRYGFTQALKEL------DGGSVAVTVA 289

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           +      +        D    ++ +   S   +                           
Sbjct: 290 EQEPGRGRNAGFHVAPDASVAMEINPALSAPGE--------------------------- 322

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I   + +Q W+ +L   G  +    TD++D   +  I ++ +  +         
Sbjct: 323 ---YETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFA-AEVGCAAYLPF 378

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +    V   +                    E+    K+G + KYD  VL RYGI + 
Sbjct: 379 GHDYPGAPVQLDRGQALALLQPLL---------EDAAVRKVGQHGKYDMHVLRRYGIVLA 429

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G+ +D +L S+VL SG + HD+ ++A++ L Y      +++      IP   +   +   
Sbjct: 430 GYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEATR 489

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++ L+L  +L PKL+ E  L  VY  ++ P++ V+ ++E  G+QID + L + S
Sbjct: 490 YAAEDADITLRLHCVLAPKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQS 549

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A++S+ ++  ++   DL+G  FNL SPKQL  +LF +LK P   KT  GQ   T ++  +
Sbjct: 550 ADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPS-TNEEALE 608

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + ILE+R L+K+++TY + LP  I+  T RVHT Y  A   TGRL+S +PN
Sbjct: 609 AIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDPN 668

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+TD G++IRRAF++P  +KLI+ DYSQIELRI+AH++    L   FE+ +D+H 
Sbjct: 669 LQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHC 728

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            +AAE+FG  I++V+   RR AK INF +IYG+S F LA QL I R EA DYI  YF RF
Sbjct: 729 AIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ +++E T+   R  GYVET+FGRR++ + I S   + R   ERAAINAP+QG+AADI
Sbjct: 789 AGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848

Query: 900 TRRAMISVHKSL--EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
            +RAM++V   L    H+    M+LQ+HDELVFE  E  + T    +   M  A      
Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAAA----Q 904

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           LRVPL V++ V ++W E +
Sbjct: 905 LRVPLVVDVGVGHHWDEAH 923


>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
 gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
          Length = 931

 Score =  878 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/985 (36%), Positives = 553/985 (56%), Gaps = 68/985 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+DG + IYRA +A     R    G+  +A+ GF N L ++L+  +     +H AV
Sbjct: 2   KKLFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFTNTLLEVLKKEQ----PTHMAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A T R+  +  YKANR  +PE L   LP V+   + F IP I   G+EADD+I T
Sbjct: 58  VFDTEAPTERHTGFEAYKANRQAMPEDLAVALPYVKKLIEGFNIPVITSDGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EK 178
               AEK G+ V  ++ DKD  QLVS    +Y   +     E + ++ V++KW I    +
Sbjct: 118 LAKQAEKVGYTVYCMTPDKDFAQLVSENIFIYKPARMGNDMEILGVKEVLEKWEIEHVHQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +  L GD++DNIPGIPGIG KTA  L++++G++E I+ N+ ++K  K+REN+  +A+
Sbjct: 178 VIDILGLWGDAVDNIPGIPGIGEKTAKALVKQFGSVEQIIANSDQLKG-KQRENVENFAD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS++L  +  D P+    E  +++D +   L      LEF  L  RV          
Sbjct: 237 QGILSKRLATILLDAPVEFHEEDFLIKDPSKEVLEPLFAELEFRTLGKRVF--------- 287

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                         G +      R ++ +   F S+S+     N+    +   ++ +   
Sbjct: 288 --------------GESFSVAEARPSSGQMDLFGSISE-----NNLPVQKPSVIDEIIPG 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I   +++Q+  + L      S    T  +DA  ++ + ++ +   ++ 
Sbjct: 329 KNISNTQHNYILIDKLEELQKLTETLLQQKEVSMDTETTGLDANDAELVGLSFAYKARE- 387

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I +  H             E L  L+   ENE+  KIG N+KYD ++L  
Sbjct: 388 -------AYYIAVPKHEKGIL--------EFLEVLRPLLENENIRKIGQNLKYDYIILKW 432

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           YGI ++G F D ML  Y+LD   + H++  +++ +L YT     E++   K+ + +  I 
Sbjct: 433 YGIELKGEFFDTMLAHYLLDPD-TRHNMDVLSENYLGYTPISITELIGKGKNQLNMRDID 491

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            ++V ++A E+++V LQL  +  P LI  +   + + ++ P+I+V+  ME  G++ID + 
Sbjct: 492 VAKVTDYAAEDADVTLQLQQVFEPMLIEAQAEKLAKEVENPLINVLGDMEKEGVKIDVEQ 551

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           L + S ++  ++  LE  IY  +G +FN++SPKQLG+ILF KL+  P   KTKTGQ+  T
Sbjct: 552 LIRFSRDLQDDIGKLENTIYHKAGHRFNIASPKQLGEILFDKLQLDPKAKKTKTGQY-QT 610

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +D+       + I+K+IL++RQL K+KSTY D+LP  INK+T RVHT Y+ A   TGRL
Sbjct: 611 GEDVLLALANKSDIVKDILDFRQLQKLKSTYVDALPLMINKKTGRVHTSYNQAVAATGRL 670

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIPI+T+ G+++R+AFI       L+SADYSQIELRI+A I+K   +   F 
Sbjct: 671 SSNNPNLQNIPIRTEKGREVRKAFIPRDENHILLSADYSQIELRIIAEISKDENMMDAFS 730

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
             LDIH   AA+++GV N+E V+   RR+AK +NF IIYG S F L+  L IPR EAA+ 
Sbjct: 731 KGLDIHTATAAKVYGVANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQNLGIPRKEAAEI 790

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF ++ GI  Y+  T NF R+NGYVETI GRR +  +INS  +++R   ER AINAP
Sbjct: 791 IENYFEQYKGIKNYMSDTMNFARENGYVETIMGRRRYLRDINSANATVRGFAERNAINAP 850

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AM+++HK L D KL +KM +Q+HDELVF+V   E     +II+  M+ A
Sbjct: 851 IQGSAADMIKIAMLNIHKDLIDRKLQSKMTMQVHDELVFDVLVTEKDIVKEIIMDRMKNA 910

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               I   VP+ V I    NW E +
Sbjct: 911 ----IKTTVPIVVEIGEGLNWLEAH 931


>gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02]
 gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18]
 gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140]
 gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19]
 gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11]
 gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18]
 gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1]
 gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1]
 gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332]
 gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679]
 gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035]
 gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 908

 Score =  878 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/959 (34%), Positives = 501/959 (52%), Gaps = 66/959 (6%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
              DG P  A+ G  NML +L    R E    + AV+FD     FR++++ +YKA RP +
Sbjct: 6   TAPDGAPTGALYGVLNMLRRL----RSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPM 61

Query: 88  PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           P+ L PQ   +    +  G P + I   EADD+I T      + G  V + + DKD+ QL
Sbjct: 62  PDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQL 121

Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
           V     L +T+  E +DIE V  K+G+ P+++    AL GD +DN+PG+   G KTA   
Sbjct: 122 VDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALIGDKVDNVPGVEKCGPKTAVKW 181

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL----EHLI 263
           L+ YG+L+ ++ +A  IK  K  EN+        LS  LV ++TDV +   L    E L 
Sbjct: 182 LEAYGSLQGVMEHAPEIKG-KVGENLQAALPQLPLSYDLVTIKTDVDLHTELSDGIESLR 240

Query: 264 LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRD 323
                  +L    K   F   +                               E E + +
Sbjct: 241 RTAPKWAQLAVDFKRWGFRTWLK------------------------------EAESNMN 270

Query: 324 TTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQK 383
           T      F S S       + + P +   E+             Y  +         + K
Sbjct: 271 TGSTDDLFGSDSIGEQAALNAEIPSEKRAEKA-----TAPEKLDYQAVTTEAQFAALLDK 325

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L    +      T ++DA +++ + I+I+    +         ++I +    +  +  + 
Sbjct: 326 LAKADTIGIDTETTSLDAMNAELVGISIAFQAGE--------AVYIPVGHSLT--AAPEQ 375

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502
              +++L  LK   EN    KIG N+KYD+ V   YGI++     D ML SY+++S    
Sbjct: 376 LDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANYGIALNNIAGDAMLASYIIESHLG- 434

Query: 503 HDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           H +  ++ +WL     T + +       I    ++  Q  E+A ++++  L+L   LR +
Sbjct: 435 HGLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEARLRAQ 494

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           +  +K L +YE+++ P+  V+ +ME  G+QID+  L + SAE+   L+ LE+  Y  +G+
Sbjct: 495 MD-DKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQ 553

Query: 620 KFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
            FNL+SPKQL +ILF K+  P+    KT  G   T    LEQ+   D P+ K IL+ R L
Sbjct: 554 PFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSL 612

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           +K+KSTY D LP  I+ R  RVHT Y+ A  +TGRLAS  PNLQNIPI+T  G+++RRAF
Sbjct: 613 AKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAF 672

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            +PP   ++SADYSQIELRI+AH++    L   F++  D+HR  AAE+FG   E VSP+ 
Sbjct: 673 TAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQ 732

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           RR+AKTINF +IYG+  + LA  L I    A ++I RYF R+PG+ EY+++TK      G
Sbjct: 733 RRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQG 792

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           YVET+FGRR++  +I +  ++ R   ERAAINAP+QG+A+D+ +RAMI+V   L D  + 
Sbjct: 793 YVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMINVRNWLSD-GIG 851

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +K+++Q+HDELV EV E E+    + +   M K       L VPL   + V  NW+E +
Sbjct: 852 SKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGL--LDVPLVAEVGVGENWEEAH 908


>gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
 gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
          Length = 911

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/979 (34%), Positives = 534/979 (54%), Gaps = 85/979 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L LVDGSS+++RAF+A P L+   DG P  A+ G  NML KL    R +    H A
Sbjct: 13  SQAPLVLVDGSSYLFRAFHALPPLT-APDGAPTGAMIGVANMLRKL----RADYGPEHMA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    TFR++IYP+YKA RP +P+ L  Q+  +    +A G+P + ++G EADD+IA
Sbjct: 68  VVFDAKGKTFRDDIYPEYKATRPPMPDELAAQIEPLHELVRAMGLPLLCVEGVEADDVIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A   G  V I + DKDL QLV+    L +T+    +D E V +K+G+ PE++V  
Sbjct: 128 TLADQAAAAGHDVVISTGDKDLAQLVNDRITLVNTMSGVTLDREGVQEKFGVAPEQIVDY 187

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GDS+DNIPG+  +G KTAA  + +YG+L+ IL  A  I   K              
Sbjct: 188 LALMGDSVDNIPGVDKVGPKTAAKWIAKYGDLDTILEQADDI-GGKIG------------ 234

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                        L +  + L  ++ +  V    + DA   +  
Sbjct: 235 ---------------------------ENLRAAAERLPTSRELITVKRDVELDAGPNDLN 267

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           + + +           E+ R       +      +    +    P +             
Sbjct: 268 IREPDHERL------LEMVRRYGFTRWRAELEGSEDEAADGNPGPSQ------------- 308

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  +    ++ + +++L+     +F   T ++DA  ++ + ++ +          
Sbjct: 309 -AKGDYRTLREEAELAELLERLDKADRVAFDTETTSLDAMRAEIVGMSFAFEPG------ 361

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                ++ L+ HT  D+        E L  LK + E+E   K+GH++KYD+ VL  +GI+
Sbjct: 362 --TAWYLPLA-HTGPDA-DPQLPRAETLERLKPWLESERHGKLGHHLKYDRNVLGNHGIT 417

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           +RG  +D +L S+ LD+G + HD+ S+A++ L Y     +++       IP  ++     
Sbjct: 418 LRGIVDDTLLESFCLDAGANRHDLDSLAERHLDYKTTHYEDVAGKGVKQIPFAEVDIGIA 477

Query: 539 QEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            ++A E++++ LQL  + +P+L   E    VY  ++ P++ V++ +E  G+++D D L +
Sbjct: 478 TDYAGEDADICLQLDAVFQPRLQAAEGPAFVYREIEMPLVPVLADIERVGVKVDPDRLGE 537

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+   +  +E   ++ +G +FNL SPKQ+ +ILF +L  P   +T  GQ   TA+D+
Sbjct: 538 QSQELLAEMERIEREAFEEAGGEFNLGSPKQIQEILFERLGLPVLRRTPKGQPS-TAEDV 596

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +    D  + + ILE R LSK++STY ++LP  I+  T RVHT Y  A   TGRL+S E
Sbjct: 597 LEQMADDYALPRLILEHRGLSKLRSTYTETLPRRIHPETGRVHTSYHQAGAATGRLSSSE 656

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++T+ G++IRRAFI+    +L++ADYSQIELRI+AH+++   L + F    DI
Sbjct: 657 PNLQNIPVRTEAGRRIRRAFIAEEGHQLLAADYSQIELRIMAHLSQDAGLLKAFAEGQDI 716

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG++ E+VS   RR AK INF +IYG+S + LA  L I + EA +YI RYF 
Sbjct: 717 HRATAAEVFGLDPEQVSGDQRRAAKAINFGLIYGMSAWGLARNLGIEQGEAREYIDRYFS 776

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+H+Y+E+ +   R+NGYVET+FGRR++  EINS   + R  +ER AINAP+QG+AA
Sbjct: 777 RYPGVHDYMERARASGRENGYVETLFGRRLYLPEINSRNGARRQQSERVAINAPMQGTAA 836

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAM+ V   LED  +  +M++Q+HDELVFEV +  +   + ++  +M  A     +
Sbjct: 837 DIIKRAMVRVAHDLEDTGIDARMIMQVHDELVFEVADAAVEDLTTLVRKAMSGAA----D 892

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L V L V++ V  NW + +
Sbjct: 893 LDVELVVDVGVGANWDDAH 911


>gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1]
 gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1]
          Length = 946

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/992 (38%), Positives = 569/992 (57%), Gaps = 65/992 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            ++ HL+LVDGSS+I+RA++  P L+   +G PV A+ G+  MLWKL  +       +H 
Sbjct: 3   SEQQHLYLVDGSSYIFRAYHRLPPLT-DPEGTPVGAVYGYTTMLWKLADDLDAAEGPTHL 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVI D  + +FRN+IYP+YKANRP+ PE L PQ PL+R AT+AF +P IE  G EADD+I
Sbjct: 62  AVILDKDSKSFRNDIYPEYKANRPEPPEDLRPQFPLIRDATRAFSLPCIEESGLEADDLI 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP----TTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           A+Y   A++EG+ VTI+S+DKDLMQLV         + DT+K  +I IE V +K+G+PPE
Sbjct: 122 ASYARAAQREGWNVTIVSSDKDLMQLVGEENGAKIDMLDTMKSARIYIEEVEEKFGVPPE 181

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K+  + AL GDS+DNIPGI G+G KTA+ L+ E+G+L   L  A  +K+ K +E +++  
Sbjct: 182 KVGDVLALMGDSVDNIPGIYGVGPKTASKLISEHGSLTAALDQAPDMKKSKLKERLIDGR 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +SR LV L+ D  + + ++ + LE      L +FL+   FT L+ R+         
Sbjct: 242 EDAEMSRVLVTLKEDCDLPMAIDEMKLEGIPSEPLAAFLEKHGFTSLLKRLGAGAGSPDR 301

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +     ++   ++G A                                      R   
Sbjct: 302 PNDLNPAKVDKAGDQGDA-----------------------------------EGNRQPL 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++  +Y  +     +Q W+ +       +    T ++DA  +  + ++++     
Sbjct: 327 PEMPKVDRSAYETVQTLDRLQAWIDRASAARLVAVDTETSSLDAMEADLVGVSLALAPN- 385

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  +  +I L+   +   + K      ++ L+ LK   E++  LK+  N KYD  V
Sbjct: 386 -------DACYIPLAHGGTDMFSDKPEQVAMEDALAALKLLLEDDSVLKVFQNGKYDLNV 438

Query: 476 LHRYGISMRGFEDIMLMSYVLDS-----GRSSHDIASIAQKWLSYT---RKEILKSRKSS 527
           L R GI +   ED M+MS+ LD+         H +  ++++ L +     K++  + K +
Sbjct: 439 LARVGIDVSPIEDTMVMSFDLDAGRGEGMGGGHGMDELSERHLLHKPLAFKDVCGTGKKA 498

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP  ++   +  E+A E+++V L+L+ +L+P+L  E    +YER+D+P+I VV+ ME  G
Sbjct: 499 IPFGEVPLDRATEYAAEDADVTLRLYRMLKPRLSEEGGTKIYERVDRPLIPVVAGMEREG 558

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D+  L ++S E +    SLE+ I++++G++F + SPKQLG+ILF K+ F  G K K+
Sbjct: 559 IKVDRARLAKLSEEFATTTASLEKEIHEIAGQQFAVGSPKQLGEILFDKMGFKGGKKGKS 618

Query: 648 GQWKTTAQDLEQINCGD--NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           G + T    LE +   +   PI   +LEWR LSK+KSTY D+L   IN  T RVHT YSL
Sbjct: 619 GAYSTDQSVLENLAKDEAAKPIADKVLEWRHLSKLKSTYTDALQAQINPETGRVHTSYSL 678

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
               TGRL+S +PNLQNIPI+T++G+ IR AF+      L++ADYSQIELR+ AH+A + 
Sbjct: 679 VGAQTGRLSSTDPNLQNIPIRTEIGRTIREAFVPEDGNVLLAADYSQIELRLAAHMADVD 738

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + F N  DIH   A E+FG    +V+   R  AKTINF+I+YGIS + LA +L +  
Sbjct: 739 TLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGISRWGLAGRLEVEP 794

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA D I  YF RFPGI  YI +T   VR+ GY ET+FGR+  +  I S   + R  +ER
Sbjct: 795 DEAQDMIDTYFQRFPGIQRYIMETLETVRERGYSETLFGRKTWFPRITSKNQAERQGSER 854

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQII 944
           AAINAPIQG++ADI +RAM  +  +L D  L   +MLLQ+HDELVFE+P+ ++  AS II
Sbjct: 855 AAINAPIQGTSADIIKRAMARMLPALRDEGLGNVRMLLQVHDELVFELPDGDVEKASPII 914

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              M +A LP ++L VPL V+I    +W   +
Sbjct: 915 ERVMAEAALPAVSLDVPLAVDIGTGQSWDAAH 946


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 896

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/978 (34%), Positives = 529/978 (54%), Gaps = 89/978 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPNLTNSQ-GEPTGAIIGVINMLKKLPAMYNTE----YVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+E+YP+YKANR  + + L  Q+  +    +  G P I   G EADD+I T 
Sbjct: 57  FDPKGKNFRHEMYPEYKANRKAMDDELRVQIQPLHQIIENMGFPLIIKDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               E++G+ V I + DKD+ QLV+    LYD++K    DI  V++K+ I P++++   A
Sbjct: 117 ARDLEQQGYDVIISTGDKDMAQLVTDNVVLYDSMKNITTDIAGVLEKYQIRPDQIIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPGIP +G KTA   LQEY ++E I+ N  +I   K  EN+    E  +LS 
Sbjct: 177 LMGDSSDNIPGIPKVGPKTAIKWLQEYQDIEGIIANQDKITG-KVGENLRNNIELLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           KL  ++ DV + + +E L  ++                              AN E +  
Sbjct: 236 KLATIKCDVELNLSIEDLKCKN------------------------------ANKEYLYE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  +  I     +   Q  ++                              
Sbjct: 266 VFTRYEFKSLLKDLSIQSSVKLTKPQADNI------------------------------ 295

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           +  Y  +   + +   V++L+   S +F   TD+++ + +  + ++    + +      +
Sbjct: 296 DIDYKIVATKEQLDDLVKELKNSSSFAFDTETDSLNTYEANLVGLSFCAKEGR-AYYIPL 354

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++ +          +    + +L  LK  F +    K+ HN K+D+ VL +YG+ + 
Sbjct: 355 QHRYLGVP---------QQLELEIVLDILKPIFVDSQKSKVAHNFKFDEKVLSKYGVKIV 405

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
               D M+M+YVL S    HD+ S++++ L         +  + ++ + +D+I   +V +
Sbjct: 406 NQVNDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTTLAGTGRNQLTLDQIDIEKVAK 464

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+      L  ++ L  +Y  ++ P+  +++ ME  G++ID   L + S
Sbjct: 465 YAAEDADITFRLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMERIGVKIDATKLIEQS 524

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   YDL+G++FNLSSP QL +ILF K+  P   KT  GQ  T+ + L Q
Sbjct: 525 ANLEDSIKELEIKCYDLAGQEFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQ 584

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   +  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 585 L-AEEYEIAALIMKYRHLSKLKNTYTDKLPKMLD-VNGRVHTSYNQTGTVTGRLSSSDPN 642

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR+AF++     +++ADYSQIELRI+AH++K   L + F   LDIH 
Sbjct: 643 LQNIPIKSPEGRKIRQAFVAEQEFCVVAADYSQIELRIMAHLSKDKNLLKAFNQGLDIHS 702

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++++ V+ + RR AK INF +IYG+S F LA QL IPR EA +YI  YF+R+
Sbjct: 703 ATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRGEAQEYIDVYFNRY 762

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  +I+S     RN  ERAAINAP+QG+AADI
Sbjct: 763 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAINAPMQGTAADI 822

Query: 900 TRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI V+   L ++    KM++Q+HDELVFEV + ++   +  I   ME      + L
Sbjct: 823 IKKAMIDVNTMILREYNDDIKMVMQVHDELVFEVRKAKLNEITTKIKSIME----TSVKL 878

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 879 DVPLEVNVDSGESWDQAH 896


>gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1]
          Length = 959

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/994 (35%), Positives = 542/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 28  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 82

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 83  AVAFDTKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 142

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 143 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIAD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 203 YLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ +TI  + + L+          P L +  + LEF K + + A   +  
Sbjct: 262 LNRILATIVTNLKLTISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP 321

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  V  I+  +N                     +LS QT  +              
Sbjct: 322 HQPTDKAV-SIDIHDN---------------------TLSSQTPIL-------------- 345

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 PI + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 346 ------PIKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 399

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 400 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 451

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 452 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 511

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 512 DKVAMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGIL 571

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 572 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 631

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 632 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 687

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 688 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 747

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 748 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQ 807

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 808 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 867

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 868 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQ 925

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VPL V I +  NW++ +
Sbjct: 926 NALTDTAKKLGWAVDFAVPLVVEIGIGENWEQAH 959


>gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7]
          Length = 956

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/994 (35%), Positives = 541/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 25  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 79

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 80  AVAFDTKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 139

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 140 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIAD 199

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 200 YLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 258

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ + I  + + L+          P L +  + LEF K + + A   +  
Sbjct: 259 LNRILATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP 318

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  V  I+  +N                     +LS QT  +              
Sbjct: 319 HQPTDKAV-SIDIHDN---------------------TLSSQTPIL-------------- 342

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 PI + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 343 ------PIKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 396

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 397 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 448

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 449 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 508

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 509 DKVAMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGIL 568

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 569 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 628

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 629 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 684

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 685 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 744

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 745 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIGVDRAVAQ 804

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 805 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 864

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 865 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKIAMQ 922

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VPL V I +  NW++ +
Sbjct: 923 NALTDTAKKLGWAVDFAVPLVVEIGIGENWEQAH 956


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/984 (34%), Positives = 528/984 (53%), Gaps = 61/984 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+DG + IYRA +A     R    G   +A+ GF N L ++L+  +     +H AV
Sbjct: 2   KKLFLLDGMALIYRAHFALSKNPRFTSSGFNTSAVMGFTNTLMEVLRKEK----PTHMAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A T R+  +  YKA+R  +PE L   LP +      F IP I   GFEADDII T
Sbjct: 58  VFDTEAPTERHTDFVAYKAHREAMPEDLSKALPYIFKLILGFNIPVITSDGFEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EK 178
               AE++G+ V  ++ DKD  QLVS    +Y   +     E + ++ V+ KW +   E+
Sbjct: 118 LAKKAEQKGYKVYCMTPDKDFAQLVSDNIFIYKPARMGNDMEILGVKEVLAKWEVERVEQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +  L GD++DNIPGIPG+G KTA  L+++YG++ENI+ ++  +K  K RENI  +A+
Sbjct: 178 VIDILGLWGDAVDNIPGIPGVGEKTAKSLIKQYGSMENIIAHSHELKG-KLRENIETHAQ 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              +S+KL  +  D P+ +    L + + +   L      LEF  L  RV          
Sbjct: 237 QGLISKKLATIILDAPVELDEAGLEMCEPSRELLEPLFAELEFRTLGRRVF--------- 287

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                         G        ++ +I+   F +         +         E     
Sbjct: 288 --------------GDGYSITEIKNVSIQQDLFGNEVVDGRTTMTVDATDIYEPEVAAVA 333

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y      +   + ++ L T  S  F   T   DA   + + ++ S      
Sbjct: 334 KNINNTEHQYHLADTFEKRAELIRLLSTQKSICFDTETTGTDANQCELVGLSFSIK---- 389

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
               K E  ++ + V+  +         + I+   K  FEN    KIG NIK+D LVL  
Sbjct: 390 ----KGEAWYVPVPVNCDE--------IQPIVDEFKPIFENPAIGKIGQNIKFDMLVLKY 437

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKI 533
           Y ++M+G   D ML  Y++D   + H++  +A+ +L Y+   I        K    +  +
Sbjct: 438 YNVTMQGELFDTMLAHYIIDPD-TRHNMDILAENYLGYSPVSITTLIGAKGKGQGTMRDV 496

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +++++A E+++V LQL  +  PKL       +   ++ P+I V++ +E  G++ID D
Sbjct: 497 EIEKIKDYAAEDADVTLQLKEVFEPKLQQVGGTKLATDIENPLIYVLADIEFEGVRIDHD 556

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            LK+ S ++  ++  LE+ +Y+ +G KFN++SPKQLG++LF KL   + AK        T
Sbjct: 557 TLKEFSKDLETDISKLEKTVYEKAGVKFNIASPKQLGEVLFEKLNLDAKAKKTKTGQYQT 616

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +D+       + I+++IL++RQL K+KSTY D+LP  +N +T RVHT Y+ A   TGRL
Sbjct: 617 GEDVLLALANKSDIVRDILDFRQLQKLKSTYVDALPLMVNPKTGRVHTSYNQAVAATGRL 676

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIPI+T+ G+++R+AFI       ++SADYSQIELRI+A I+K   +   F 
Sbjct: 677 SSNNPNLQNIPIRTERGREVRKAFIPRNDDHVIVSADYSQIELRIIAEISKDANMMDAFI 736

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +DIH   AA+++G  +++V   MRR+AK +NF IIYG S F L+  L IPR EAAD I
Sbjct: 737 QGIDIHTATAAKVYGKTLDEVDGTMRRNAKAVNFGIIYGQSAFGLSQNLNIPRKEAADII 796

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF ++PGI  Y+  T NF R+NG+V+T+ GRR +  +INS  +++R   ER AINAPI
Sbjct: 797 DQYFAQYPGIKNYMSDTMNFARENGFVQTLMGRRRYLRDINSANATVRGYAERNAINAPI 856

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAAD+ + AMI++H+  +  KL ++M +Q+HDELVF+V + EI     II+ +M+ A 
Sbjct: 857 QGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDELVFDVHQSEIEIVKPIIMQNMQTA- 915

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                  VP+ V I    NW E +
Sbjct: 916 ---FKTEVPIVVEIGTGANWLEAH 936


>gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
          Length = 897

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/978 (35%), Positives = 530/978 (54%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL           + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKL----PIMYDTEYVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T 
Sbjct: 57  FDAKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+G+ + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +++   A
Sbjct: 117 AKNLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LMGDASDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ + + +E L                               C AA+   ++ 
Sbjct: 236 QLATIKCDLELDLTVEDL------------------------------KCKAADKAYLIE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  + + + D  I TSQ                            +Q    
Sbjct: 266 AYTRYEFKSLLKDLD-NSDIKIATSQ----------------------------AQAADV 296

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S +F   TD+++ + +  + ++    + +       
Sbjct: 297 AIEYITITTQTQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +      +L  LK  F +   +K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HD+ S++++ L         I  + K    +D++    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDA-NGRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 NVPLEVNVDSGKSWDQAH 897


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/985 (37%), Positives = 545/985 (55%), Gaps = 62/985 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+DG + IYRA +A     R    G+  +A+ GF N L ++L+  +     SH AV
Sbjct: 2   KKLFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLMEVLKKEK----PSHIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A T R+  +  YKA+R  +PE L   LP V    + F IP I   G+EADDII T
Sbjct: 58  VFDTDAPTERHVDFEAYKAHRQAMPEDLSAALPYVVKLIEGFNIPVITKDGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE-K 178
                E++GF V  ++ DKD  QLVS    +Y   +     E + +  V+ KW I    +
Sbjct: 118 LAKEGERQGFQVYCMTPDKDFAQLVSENIFIYKPARMGNEMEILGVPEVLAKWDIENVLQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ +  L GD++DNIPGIPGIG KTA  L+++YG++ENI+ NA  +K  K+REN+  YA+
Sbjct: 178 VIDILGLWGDAVDNIPGIPGIGEKTAKSLIRQYGSMENIIANAHELKG-KQRENVEMYAQ 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              +S+KL  +  DVP+T   + L+LE  +   L      LEF  +  RV          
Sbjct: 237 QGLVSKKLATIILDVPVTFDPDALVLEAPSRELLEPLFAELEFRTIGKRVF--------- 287

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                 D +  E K          +T+ +   F +++  T   +             +  
Sbjct: 288 ----GEDFSVNEAK---------VNTSGQMDMFGNVTAGTDTESKVFVAPPELFAEAENA 334

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I      +  +++L    S SF   T   DA  ++ + ++ S      
Sbjct: 335 KTIENTEHDYRLIDTADLRKALIEELLQQESISFDTETTGTDANLAELVGLSFSVKPGAG 394

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I L          + TL + IL   K   ENE+  KIG NIKYD L+L  
Sbjct: 395 --------YYIPLP--------PERTLAQPILDEFKVVLENENIAKIGQNIKYDMLILKW 438

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPIDKI 533
           YG+ ++G   D ML  Y++D   + H++  +++ +L Y+   I K      K+   +  +
Sbjct: 439 YGLEIKGKLFDTMLAHYLIDPD-TRHNMDVLSENYLCYSPISITKLIGPKGKNQGNMRDV 497

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +QV ++A E+++V LQL  + RP L       +   ++ P+I V++ +E  G++ID +
Sbjct: 498 PVAQVVDYAAEDADVTLQLANVFRPMLKDLNAEQLATEVENPLIYVLADIESEGVRIDIE 557

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKT 652
            L   S E+  ++   E+N+YD  G +FNL+SPKQLG++LF +L+  P   KTKTGQ+  
Sbjct: 558 TLVNYSKELETDIRKFEKNVYDKCGVEFNLASPKQLGEVLFDRLQLDPKAKKTKTGQY-Q 616

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +D+       + I+++IL++RQL K+KSTY D+LP  +N +T RVHT Y+ A   TGR
Sbjct: 617 TGEDVLLALASKSDIVQDILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSYNQAVAATGR 676

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIPI+T+ G+++RRAFI       L+SADYSQIELRI+A I+K   + Q F
Sbjct: 677 LSSNNPNLQNIPIRTERGREVRRAFIPRDENHVLLSADYSQIELRIIADISKEENMLQAF 736

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              LDIH   AA+++GV IE+V+   RR+AK +NF IIYG S F L+  L IPR EAA+ 
Sbjct: 737 NQGLDIHTATAAKVYGVAIEEVTSTQRRNAKAVNFGIIYGQSAFGLSQSLGIPRKEAAEI 796

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I +YF ++PGI +Y+  T NF R+NG+VETI GRR +  +INS   ++R   ER AINAP
Sbjct: 797 IDQYFTQYPGIKKYMSDTMNFARENGFVETILGRRRYLRDINSANQTVRGFAERNAINAP 856

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AMI++HK +    + +KM +Q+HDELVF+V + E+    +II H M+ A
Sbjct: 857 IQGSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELVFDVLKTEVDEMKEIISHRMKTA 916

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                   VP+++ I   NNW E +
Sbjct: 917 IAT----TVPIEIEIGQGNNWLEAH 937


>gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E]
          Length = 959

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/994 (35%), Positives = 540/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 28  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 82

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 83  AVAFDTKAPTFRHNLSETYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 142

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 143 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIAD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 203 YLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ + I  + + L+          P L +  + LEF K           +
Sbjct: 262 LNRILATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKK-----------E 310

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            A    ++   +   +K ++I+T                 D T    +   P        
Sbjct: 311 MAQTAQLLNLPHQPTDKALSIDT----------------HDNTPSSQTPIPP-------- 346

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                  I + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 347 -------IKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 399

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 400 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 451

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 452 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 511

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 512 DKVAMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGIL 571

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 572 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 631

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 632 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 687

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 688 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 747

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 748 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQ 807

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 808 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 867

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 868 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQ 925

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VPL V I +  NW++ +
Sbjct: 926 NALTDTAKKLGWAVDFAVPLVVEIGIGENWEQAH 959


>gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1]
          Length = 959

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/994 (35%), Positives = 539/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 28  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 82

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 83  AVAFDTKAPTFRHNLSETYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 142

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 143 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIAD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 203 YLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ + I  + + L+          P L +  + LEF K + + A   +  
Sbjct: 262 LNRILATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP 321

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  V  I+  +N                     +LS QT                 
Sbjct: 322 HQPTDKAV-SIDIHDN---------------------TLSSQTP---------------- 343

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 PI + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 344 ----IPPIKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 399

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 400 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 451

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 452 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 511

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++      +A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 512 DKVAMDVASHYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGIL 571

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 572 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 631

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 632 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 687

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 688 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 747

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 748 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQ 807

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 808 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 867

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 868 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQ 925

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VPL V I +  NW++ +
Sbjct: 926 NALTDTAKKLGWAVDFAVPLVVEIGIGENWEQAH 959


>gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169]
          Length = 956

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/994 (35%), Positives = 541/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 25  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 79

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 80  AVAFDTKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 139

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 140 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIAD 199

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 200 YLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 258

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ + I  + + L+          P L +  + LEF K + + A   +  
Sbjct: 259 LNRILATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP 318

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  V  I+  +N                     +LS QT  +              
Sbjct: 319 HQPTDKAV-SIDIHDN---------------------TLSSQTPIL-------------- 342

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 PI + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 343 ------PIKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 396

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 397 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 448

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 449 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 508

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 509 DKVAMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGIL 568

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 569 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 628

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 629 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 684

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 685 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 744

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 745 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQ 804

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 805 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 864

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 865 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQ 922

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VPL V I +  NW++ +
Sbjct: 923 NALTDTAKKLGWAVDFAVPLVVEIGIGENWEQAH 956


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
           bacterium]
          Length = 894

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/980 (32%), Positives = 523/980 (53%), Gaps = 90/980 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L+L+DGSS+I+RAF+          G P NA+ GF +ML K++++ + +    +
Sbjct: 1   MSKAKTLYLIDGSSYIFRAFFGIRQFLSTSTGFPTNALYGFIHMLQKVVKDEKPD----Y 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+++Y DYKANR   PE L  Q P      +A+ I  + + GFEADDI
Sbjct: 57  LAVAFDSKEKTFRHKMYEDYKANRDAPPEDLAKQFPHFEPLVKAYNIHGVRVPGFEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A +EGF V I+S DKD+MQL+ P   + DT+K +   +E V +K+G+ P+K++
Sbjct: 117 IGTLAKKAAEEGFKVVIVSGDKDMMQLIGPDIRMLDTMKNKWFGVEEVQEKFGVTPDKVI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GDS D+IPG+ G+G KTA+ L++++ ++  +      + + K ++ +L+  E A
Sbjct: 177 DVMGLMGDSSDHIPGVKGVGPKTASELIRKFSSMHELYERIDEVDKAKLKDKLLQDKEMA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+LV + T + +            +G      L+ ++F                   
Sbjct: 237 LLSRELVTINTTMEL-----------PDG------LEDMKFKT----------------- 262

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 + +E + +  E E           FSSL  +        +P             
Sbjct: 263 -----PDNSELRKLFSEFE-----------FSSLLAELGDDAGVSSPAI----------- 295

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I+   D+++W+++L+     +  + T +++   +  + I++S        
Sbjct: 296 ----ESHYETILIEADLERWIEQLKKSEIFALDLETTSLNPVQAHVVGISLSCEAGV-AC 350

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              +   +  +      D   K          LK         K+G NIKYD +VL   G
Sbjct: 351 YIPLAHRYFGVPEQLDLDLVLKKLKPLLEDPKLK---------KVGQNIKYDLIVLKSEG 401

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           +++ G   D ML SY+L+     H++  +A+ +L Y     KE++ +    I  DK+   
Sbjct: 402 VNLVGVAFDTMLASYILNPSGRRHNMNDMARDYLGYTTTKYKEVVGTASKEIGFDKVDIE 461

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              E+A E++++  +L+  L P L  +    + + L+ P+I+V+++ME+ G+++D+  L+
Sbjct: 462 LATEYAAEDADITWRLYENLSPLLQGDD-FKLLQELELPLIEVLAEMELHGMKLDKSHLQ 520

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S  I + L   ++ IY L+GE+FN++SPKQL  ILF KL+ P   KTK G + T    
Sbjct: 521 KLSQLIQQKLEDQQKEIYSLAGEEFNINSPKQLSVILFEKLELPVIKKTKNG-YSTDVSV 579

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LEQ+   ++ +   +L +RQL K+KSTYAD+L   I   T RVHT ++     TGRL+S 
Sbjct: 580 LEQLAA-EHELPDVVLTYRQLVKLKSTYADALQEDIFNNTGRVHTSFNQTVAATGRLSSS 638

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPI+T++G++IR+AF++     L+SADYSQ+ELR+LAH+++   L   F+   D
Sbjct: 639 NPNLQNIPIRTEMGREIRKAFVAEGNNHLLSADYSQVELRVLAHLSEDEALVDAFQMGED 698

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A EIFG   E++  + RR AK +NF I+YG+S F L+ QL+I   +A  +I +YF
Sbjct: 699 IHTRTACEIFGTTPERLDAEARRMAKAVNFGIVYGLSAFGLSKQLKIYPKDAKKFIDQYF 758

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +  +  Y+ +T    ++ GY  T+  RR +  ++ S    +R   ER AIN+P+QGSA
Sbjct: 759 ALYKKVKVYMVETVAQAKEVGYTLTLMNRRRYLPDLKSQNRQVRESAERIAINSPVQGSA 818

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI + + +   KL ++M+LQ+HDELVFE PE+E      ++   ME+      
Sbjct: 819 ADLIKLAMIRLAEQIRTKKLKSRMILQVHDELVFECPEDEEQEMRALVTKEMEEVM---- 874

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L+VPL V+I    NW   +
Sbjct: 875 PLKVPLIVDIGWGENWNTAH 894


>gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8]
          Length = 956

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/994 (35%), Positives = 541/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 25  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 79

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 80  AVAFDTKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 139

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 140 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIAD 199

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 200 YLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 258

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ + I  + + L+          P L +  + LEF K + + A   +  
Sbjct: 259 LNRILATIVTNLKLAISFDDITLDHSQETTIERAPALYALFEELEFKKEMAQTAELLNLP 318

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  V  I+  +N                     +LS QT  +              
Sbjct: 319 HQPTDKAV-SIDIHDN---------------------TLSSQTPIL-------------- 342

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 PI + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 343 ------PIKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 396

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 397 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 448

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 449 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 508

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 509 DKVAMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGIL 568

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 569 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 628

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 629 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 684

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 685 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 744

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 745 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQ 804

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 805 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 864

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 865 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQ 922

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VPL V I +  NW++ +
Sbjct: 923 NALTDTAKKLGWAVDFAVPLVVEIGIGENWEQAH 956


>gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 959

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/994 (35%), Positives = 541/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 28  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 82

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 83  AVAFDTKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 142

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 143 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIAD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 203 YLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ + I  + + L+          P L +  + LEF K + + A   +  
Sbjct: 262 LNRILATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP 321

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  V  I+  +N                     +LS QT  +              
Sbjct: 322 HQPTDKAV-SIDIHDN---------------------TLSSQTPIL-------------- 345

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 PI + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 346 ------PIKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 399

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 400 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 451

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 452 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 511

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 512 DKVAMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGIL 571

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 572 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 631

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 632 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 687

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 688 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 747

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 748 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQ 807

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 808 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 867

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 868 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQ 925

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VPL V I +  NW++ +
Sbjct: 926 NALTDTAKKLGWAVDFAVPLVVEIGIGENWEQAH 959


>gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4]
 gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4]
          Length = 959

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/994 (35%), Positives = 541/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 28  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 82

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 83  AVAFDTKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 142

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 143 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIAD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 203 YLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ + I  + + L+          P L +  + LEF K + + A   +  
Sbjct: 262 LNRILATIVTNLKLAISFDDITLDHSQETTIERAPALYALFEELEFKKEMAQTAELLNLP 321

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  V  I+  +N                     +LS QT  +              
Sbjct: 322 HQPTDKAV-SIDIHDN---------------------TLSSQTPIL-------------- 345

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 PI + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 346 ------PIKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 399

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 400 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 451

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 452 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 511

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 512 DKVAMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGIL 571

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 572 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 631

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 632 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 687

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 688 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 747

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 748 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQ 807

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 808 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 867

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 868 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQ 925

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VPL V I +  NW++ +
Sbjct: 926 NALTDTAKKLGWAVDFAVPLVVEIGIGENWEQAH 959


>gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/981 (35%), Positives = 525/981 (53%), Gaps = 95/981 (9%)

Query: 1   MQKE-NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +   ++L+DGSS+IYRA+YA   LS    GL  NA+ GF NML K++++ + +    
Sbjct: 1   MTDQAQRIYLIDGSSYIYRAYYAIRQLSNSK-GLATNAVYGFTNMLLKVVRDEQPD---- 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AVIFD    TFR EIYP+YKANR  +PE L PQ+P+++   +AF +PA+E++G+EADD
Sbjct: 56  HLAVIFDAKGPTFRKEIYPEYKANRSAMPEDLRPQIPVIKELVKAFNMPALELEGYEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IIAT      + G AVT+++ DKDLMQ+VS    L DT+K++ + +  V +++G  P+K+
Sbjct: 116 IIATLARRFAERGMAVTVVTGDKDLMQVVSERVRLLDTMKDQVVGLAEVAERFGGTPDKV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V +QAL GDS DN+PG+PGIG KTA  L+ ++G LE                N+L   + 
Sbjct: 176 VEVQALAGDSSDNVPGVPGIGEKTARTLIAQFGTLE----------------NLLANIDQ 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L  F +    +K +  +      D    
Sbjct: 220 V-----------------------SGKKRQENLRQFGEQARLSKKLVSLVDDLSLDVDYD 256

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
              + + N      +  E E  +                                 +  S
Sbjct: 257 NFDLSEPNHEALTHLFKELEFHKLLQ------------------------------EFSS 286

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               + + Y  +V    +   +  L+  G  +F   T ++ A  +  + I+ +     + 
Sbjct: 287 DERASGEHYQTVVTEDQLDDLIHALKKAGRFAFDTETTSLVATRADLVGISFAIKPG-EG 345

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V   ++ +          +      ++  L+    +    KI  N KYD LVL R 
Sbjct: 346 WYLPVGHRYLGVP---------EQLDRALVIDKLRPLMADTQLAKIAQNAKYDLLVLRRA 396

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
           G+ + G   D ML SY+ +    SH + ++A + L Y      E+    K  I  +++  
Sbjct: 397 GLEVAGLSCDTMLASYLANPAAKSHGLDTLASELLGYRTIGYTEVTGKGKKQIGFEEVEI 456

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +   +A E++++ L+L   L P+L       ++  ++ P++ V+S ME  G++ID D L
Sbjct: 457 EKATVYATEDADITLRLADKLEPQLAETGQGELFRTVELPLVTVLSDMEWQGVRIDADFL 516

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K +SA++   L +LE  I++LSG  FN++SPKQLG++LF  LK P G KTKTG W T  +
Sbjct: 517 KGLSADMKTRLATLEGEIHELSGRSFNVASPKQLGEVLFEHLKLPRGKKTKTG-WSTDVE 575

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L  +   ++PI   +L++R ++K+KSTY D+LP  I+  T R+HT ++ A T TGRL+S
Sbjct: 576 VLTNL-AEEHPIAARVLDYRSVAKLKSTYCDALPKLIHPDTGRIHTSFNQAVTATGRLSS 634

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+T+ G++IR AF+      L++ADYSQ+ELRILAH+A    L + F +  
Sbjct: 635 SDPNLQNIPIRTEEGRRIREAFVPAEGNLLLAADYSQVELRILAHMADEPALKESFAHGE 694

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+EIFGV +E V+P+MRR AKTINF ++YG+S F LA  L I R EA  YI  Y
Sbjct: 695 DIHARTASEIFGVFLELVTPEMRRQAKTINFGVLYGMSAFGLAKSLGIARKEAQTYIDNY 754

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+P + E++E  K   R+  YV T+ GRR    EI S   ++R   ER AIN PIQGS
Sbjct: 755 FARYPKVLEFMEAKKAEAREKQYVTTLLGRRCAVPEIASKNGAVRGYAERNAINYPIQGS 814

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ +H+ L+  KL TKM+LQ+HDELVF++P  E      ++   ME A    
Sbjct: 815 AADIIKVAMLRIHERLKAEKLETKMVLQVHDELVFDMPAAEQAAVENLVREQMEHA---- 870

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L VPL V++ V  NW+E +
Sbjct: 871 FELDVPLLVDMGVGRNWREAH 891


>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
 gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
          Length = 936

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/986 (35%), Positives = 538/986 (54%), Gaps = 68/986 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN   LVDGSS++YRAF++ P L+    G    A+ G  NML  L+Q        SH  V
Sbjct: 6   ENPFVLVDGSSYLYRAFFSPPHLTNSA-GDATGAVYGVVNMLKSLMQQF----SPSHIVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+++Y  YKANRP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDDMYSQYKANRPSMPDDLRIQIEPLHAVIKAMGLPILIVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  A  +G    I + DKD+ QLV   T L +T+    +DI+ V +K+G+P E ++   
Sbjct: 121 LSKQASAKGIKTLISTGDKDMAQLVDEHTLLINTMTNSVLDIDGVTEKFGVPAELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GD+ DNIPG+PG+G KTA  +LQ  G+++ I  N  ++        K   + + +  
Sbjct: 181 ALMGDTADNIPGVPGVGSKTALAMLQGIGSMDLIYENLDKLAPLGFRGSKTIAKKMADNE 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + ARLS KL  ++ DV + +  +       +   LI     LEF + ++ V         
Sbjct: 241 DMARLSYKLATIKLDVELEVAYDDFKTIKQDTDSLIKLFGKLEFRRWLSAVLDGEQILQG 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                +    +T +  +++E                          ++TP +        
Sbjct: 301 GASTSMTSTPSTSDTELSLE-------------------------IKKTPIRHD------ 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST-LDQ 416
                        I     ++Q +QKLE     S  I T   D   +K +  + +  +  
Sbjct: 330 -----------QCIYTQGQLKQLIQKLEKAELFSISIETTCADYMQAKIVGFSFALQVAD 378

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           ++     +E  ++ L+ H   D+  +       L  LK   E     K+  N+K+ + VL
Sbjct: 379 ENSAEITIEAFYLPLA-HDYIDAPAQLEYLAT-LDKLKPLLEKIAPQKVVFNLKFMRSVL 436

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
              GI+++G   D ML SY+LDS    HD AS+  K+L       + I    K  +P ++
Sbjct: 437 RLEGINLQGVAFDPMLESYLLDST-GKHDKASLTLKYLQIEIASYEAIAGKGKKQLPFNQ 495

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +S   +  +  E+  + L+L LLL PKL    KL+ +YE ++ P+  V+S +E+ G++ID
Sbjct: 496 VSIKDITPYVGEHVELSLRLHLLLWPKLEKFPKLVALYEDIELPLAIVLSDVELGGVEID 555

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L   S EI K LL +E+  Y  +G++FNLSSPKQL  ILF  L+ P   KT  G   
Sbjct: 556 ATMLGAQSVEIGKRLLEIEKEAYIEAGKEFNLSSPKQLQSILFEDLELPILKKTPKGAPS 615

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + L ++      + K ++E R LSK+KSTY D LP  IN +T RVHT Y  A T+TG
Sbjct: 616 TGEEVLVELAET-YKLPKLVIEHRGLSKLKSTYTDKLPKMINAQTGRVHTSYHQAVTVTG 674

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+++ G++IR+AFI+P   K+++ADYSQIELRI+AH+++   L + F
Sbjct: 675 RLSSSDPNLQNIPIRSEQGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSQDKGLLEAF 734

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              LDIH+  A+E+F V++++V+   RR AK INF +IYG+S F LA QL+I RS+A  Y
Sbjct: 735 STGLDIHKATASEVFSVSVDEVTTNQRRSAKAINFGLIYGMSAFGLAKQLKISRSDAKLY 794

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           + +YFHR+PG+  Y++ T++  R+ G+VETI GRR+    INS    ++  +ERAAINAP
Sbjct: 795 MDKYFHRYPGVLTYMQTTRDKAREQGFVETILGRRLQLPHINSRNGILKKASERAAINAP 854

Query: 892 IQGSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +QG+AADI ++AM+ V   +E       ++L+Q+HDELVF + E+++   + II   M K
Sbjct: 855 MQGTAADIIKKAMLDVAAWVEKQAPSQVQLLMQVHDELVFCIKEDQVENYTCIIQEIMAK 914

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A +    L VPL   + V NNW E +
Sbjct: 915 AVI----LDVPLLAEVGVGNNWDEAH 936


>gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1]
          Length = 959

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/994 (35%), Positives = 540/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 28  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 82

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 83  AVAFDTKAPTFRHNLSETYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 142

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 143 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIAD 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 203 YLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ + I  + + L+          P L +  + LEF K + + A   +  
Sbjct: 262 LNRILATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP 321

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  V  I+  +N                     +LS QT                 
Sbjct: 322 HQPTDKAV-SIDIHDN---------------------TLSSQTP---------------- 343

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 PI + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 344 ----IPPIKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 399

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 400 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 451

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 452 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 511

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 512 DKVAMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGIL 571

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 572 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 631

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 632 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 687

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 688 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 747

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 748 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQ 807

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 808 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 867

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 868 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHNIGNLIKTAMQ 925

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VPL V I +  NW++ +
Sbjct: 926 NALTDTAKKLGWAVDFAVPLVVEIGIGENWEQAH 959


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 894

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/981 (35%), Positives = 523/981 (53%), Gaps = 94/981 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     + LVD SSF+YRAF+A P L R  DGLP  AI G  NML +L    ++E   S 
Sbjct: 1   MPTAPRI-LVDASSFLYRAFHALPDL-RAPDGLPTGAILGVANMLRRL----QREYPQSE 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD P  TFR+ ++  YKA RP +PE +  Q+ L+    +A G+  + + G EADD+
Sbjct: 55  IIVVFDAPGKTFRDALFDQYKAQRPPMPEEMRAQVELLHQWVRAMGLRLLVVPGVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    A      V I + DKDL QLV   T L DT+K  + D+  V  ++G+ P ++ 
Sbjct: 115 IGTLAR-ATPVQTPVIIATGDKDLTQLVDEHTTLMDTMKGTRTDLAEVRARFGVEPTQIA 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DNIPG+PG G KT A  LQ+YG+L+ IL +   I   K  E++   AE  
Sbjct: 174 DYLALVGDKVDNIPGVPGAGPKTVAKWLQQYGDLDGILAHGQEIPG-KVGESLRAVAEIL 232

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             SR+L  +R DV I            +   L          +L  R+            
Sbjct: 233 PRSRELARIRCDVEIPPA----EATPPDPATL---------RRLAERLG----------- 268

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                         F        + +   TP           S 
Sbjct: 269 ------------------------------FQQWLKDLPEPSGPSTP-----------SA 287

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P+  ++Y  IV+ +++ + +  LE     +    T ++D   ++ +  +++  +     
Sbjct: 288 DPVRRENYRAIVHREELARLLATLEQTERVAIDTETSSLDPHAAELVGFSLAWFEGD--- 344

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
             +   +++ L         GK       L+ L  + E+    K+  N K+D  +    G
Sbjct: 345 --RTRAVYVPLGHRE-----GKQIPRDVALALLGPWLEDGSKAKLAQNAKFDWQIFWAQG 397

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           +  RG   D +L SYVLDS  + HD+ S+A+++L +      E+    + +     +  +
Sbjct: 398 LRPRGLARDTLLESYVLDSTAA-HDLDSLAERYLQHRNISYAELTGKGRQARSFAAVDIA 456

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +A E++ V L++   + P++   E L  V+  ++ P+++V+++ME  G++ID D+L
Sbjct: 457 SATAYAAEDAEVCLRVDAQMWPQIRRHEGLARVFRDIEMPLVEVLARMEWAGVRIDVDVL 516

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++S E+   + ++E   +  +G++FNL+SPKQ+  ILF K+  P   KT  GQ  T   
Sbjct: 517 KRLSEELDTRMATVESEAFAAAGQRFNLNSPKQIQTILFDKMGLPVLKKTPGGQPSTNED 576

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L ++      + + IL++R L+K+K+TYAD+LP  I +RT RVHT Y  A   TGRL+S
Sbjct: 577 VLAEL-AKQADLPRLILDYRGLAKLKNTYADALPQMIQERTGRVHTHYHQAVAATGRLSS 635

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP+++DLG++IR+AF++ P   LISADYSQIELRI+AH++    L Q F   L
Sbjct: 636 SDPNLQNIPVRSDLGRRIRQAFVAEPGHLLISADYSQIELRIMAHLSGDAGLRQAFARGL 695

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+F + +E+V+P+ RR AK INF +IYG +P+ LA QL + + EA  Y++RY
Sbjct: 696 DIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTPYGLAQQLGVGQGEAKAYMERY 755

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+ EY+E T+   RQ GYVET+FGRR++  EI S   + RN  ERAAINAP+QG+
Sbjct: 756 FERYPGVREYMENTRRLARQQGYVETLFGRRLYLPEIRSQNPARRNYAERAAINAPMQGT 815

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI+V   L       +MLLQ+HDEL+ EVPE+ +  A Q++   ME      
Sbjct: 816 AADLIKLAMIAVDAWLLAQTDHGRMLLQVHDELILEVPEKAVDAACQMLREKMEGVA--- 872

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L VPL V + V  NW   +
Sbjct: 873 -ELAVPLTVGLGVGANWDAAH 892


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score =  873 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/978 (35%), Positives = 531/978 (54%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL           + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKL----PIMYDTEYVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T 
Sbjct: 57  FDAKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+G+ + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +++   A
Sbjct: 117 AKNLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LMGDASDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ + + +E L                               C AA+   ++ 
Sbjct: 236 QLATIKCDLELDLTVEDL------------------------------KCKAADKAYLIE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  + + + D  I TSQ                            +Q    
Sbjct: 266 AYTRYEFKSLLKDLD-NSDIKIATSQ----------------------------AQAADV 296

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S +F   TD+++ + +  + ++    + +       
Sbjct: 297 AIEYITITTQTQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +      +L  LK+ F +   +K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELGFVLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HD+ S++++ L         I  + K    +D++    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF K+  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKMGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDA-NGRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 NVPLEVNVDSGKSWDQAH 897


>gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 896

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/978 (34%), Positives = 529/978 (54%), Gaps = 89/978 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL      E    + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPNLTNSQ-GEPTGAIIGVINMLKKLPAMYDTE----YVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+E+YP+YKANR  + + L  Q+  +    +  G P I   G EADD+I T 
Sbjct: 57  FDPKGKNFRHEMYPEYKANRKAMDDELRVQIQPLHQIIENMGFPLIIKDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               E++G+ V I + DKD+ QLV+    LYD++K    D   V++K+ I P++++   A
Sbjct: 117 ARDLEQQGYDVIISTGDKDMAQLVTDNVVLYDSMKNVTTDFAGVLEKYQIRPDQIIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPGIP +G KTA   LQEY ++E I+ N  +I   K  EN+    E  +LS 
Sbjct: 177 LMGDSSDNIPGIPKVGPKTAIKWLQEYQDIEGIIANQDKITG-KVGENLRNNIELLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           KL  ++ DV + + +E L  ++                              AN E +  
Sbjct: 236 KLATIKCDVELNLSIEDLKCKN------------------------------ANKEYLYE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  +  I     +   Q  ++                              
Sbjct: 266 VFTRYEFKSLLKDLSIQSSVKLTKPQADNI------------------------------ 295

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           +  Y  +   + +   V++L+   S +F   TD+++ + +  + ++    + +      +
Sbjct: 296 DIDYKIVATKEQLDDLVKELKNSSSFAFDTETDSLNTYEANLVGLSFCAKEGR-AYYIPL 354

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++ +          +    + +L  LK  F +    K+ HN K+D+ +L +YG+ + 
Sbjct: 355 QHRYLGVP---------QQLELEIVLDSLKPVFVDSQKSKVAHNFKFDEKILSKYGVKIV 405

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
               D M+M+YVL S    HD+ S++++ L         +  + ++ + +D+I   +V +
Sbjct: 406 NQVNDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTTLAGTGRNQLTLDQIDIEKVAK 464

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+      L  ++ L  +Y  ++ P+  +++ ME  G++ID   L + S
Sbjct: 465 YAAEDADITFRLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMEKVGVKIDAAKLIEQS 524

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   YDL+G++FNLSSP QL +ILF K+  P   KT  GQ  T+ + L Q
Sbjct: 525 ANLEDSIKELEIKCYDLAGQEFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQ 584

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   +  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 585 L-AEEYEIAALIMKYRHLSKLKNTYTDKLPKMLD-VNGRVHTSYNQTGTVTGRLSSSDPN 642

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR+AFI+     +++ADYSQIELRI+AH++K   L + F   LDIH 
Sbjct: 643 LQNIPIKSPEGRKIRQAFIAEQEFCVVAADYSQIELRIMAHLSKDKNLLKAFNQGLDIHS 702

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++++ V+ + RR AK INF +IYG+S F LA QL IPR EA +YI  YF+R+
Sbjct: 703 ATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRGEAQEYIDVYFNRY 762

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  +I+S     RN  ERAAINAP+QG+AADI
Sbjct: 763 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAINAPMQGTAADI 822

Query: 900 TRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI V+   L+++    KM++Q+HDELVFEV + ++   +  I   ME      + L
Sbjct: 823 IKKAMIDVNTMILQEYNDDIKMVMQVHDELVFEVRKAKLNEITTKIKSIME----TSVKL 878

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 879 DVPLEVNVDSGESWDQAH 896


>gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 956

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/994 (35%), Positives = 539/994 (54%), Gaps = 81/994 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + LVDGS +++R F+  P LS    GLP NAI G  N L KL++        +H 
Sbjct: 25  TTRPPVILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLIKKYH----PTHM 79

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +   YKA+RP + E L  Q+P +    +  GI  I+I GFEADDII
Sbjct: 80  AVAFDTKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDII 139

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A ++G  V I + DKD+ QLV+    L D+   +  D   VI+K+G+  E++  
Sbjct: 140 GTLAYQACQQGHRVIISTGDKDMAQLVNDCVILEDSFTGKLTDNAGVIEKFGVTSEQIAD 199

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L GD+ D I GIP +G KTAA LL EY N++ IL N + IK     ++I +  ++  
Sbjct: 200 YLTLMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGA-VGKSIADNQDSIP 258

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCD 295
           L+R L  + T++ + I  + + L+          P L +  + LEF K + + A   +  
Sbjct: 259 LNRILATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP 318

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  V  I+  +N                     +LS QT  +              
Sbjct: 319 HQPTDKAV-SIDIHDN---------------------TLSSQTPIL-------------- 342

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 PI + SY  I   +D  + + KL      +    T  ++  H+K + I++ST D
Sbjct: 343 ------PIKDISYHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTAD 396

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474
            +          +I +      D    N L  + +LS  K   EN +  KIG ++KYD  
Sbjct: 397 YEG--------YYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAH 448

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
           +  +YGI++  ++ D ML SYV+++  + H + ++A+ +L       +++       +  
Sbjct: 449 IFKKYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSF 508

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQ 589
           DK++     ++A E++++  +L+      +  +K    +   L+ P   +++QME  GI 
Sbjct: 509 DKVAMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGIL 568

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L Q+S E  K +++L+     ++ E FNL+SPKQLG+ILF KL    G KTKTGQ
Sbjct: 569 IDTDFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQ 628

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+      ++  ++P+I  +LE R LSK+KSTY D+L N  +++  RVHT Y  A T 
Sbjct: 629 YATSEAV---LSKIEHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTS 684

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+TD G+ IR AFI+P  + +++ADYSQIELR++AH +    L +
Sbjct: 685 TGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIR 744

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F ++LDIH   AAEI G +I +V+P  RR AK +NF ++YG+S F LA Q+ + R+ A 
Sbjct: 745 AFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQ 804

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYIKRYF R+P I EY+E+TK   +Q GYV+TI GR+++  +I S    I++  ERAAIN
Sbjct: 805 DYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAIN 864

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAA+I + AMI+V + L       K+LLQ+HDELVFEV  ++      +I  +M+
Sbjct: 865 APLQGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQ 922

Query: 950 KACLP-------KINLRVPLKVNIKVSNNWQEEN 976
            A           ++  VP  V I +  NW++ +
Sbjct: 923 NALTDTAKKLGWAVDFAVPFVVEIGIGENWEQAH 956


>gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9]
 gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9]
          Length = 908

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/980 (34%), Positives = 523/980 (53%), Gaps = 80/980 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSSF+YRA +A P L R  DG P  AI G  NM+ +    ++  S   + A 
Sbjct: 2   KKTLLLVDGSSFLYRAHFAMPNL-RSPDGEPSGAIFGLINMMKR----TQIVSKPDYIAC 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  TFR+E+Y +YK++RP +P+ +  Q+  +  A +A G   I   G EADDIIAT
Sbjct: 57  VFDAPGRTFRHELYTEYKSHRPPMPDDMRTQIEPIHQAIEALGWTIIMQSGVEADDIIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +     I ++DKD+ QLV     +  T KEE +D   V++K+G+ P++++   
Sbjct: 117 IADFAINQNIKCVIATSDKDIAQLVDDNISI-ITGKEEILDSNGVLEKYGVRPDQIIDYL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD+ DNIPG+  +G KTA   L E+G+LEN+L NA  +K  K  +N++E      L+
Sbjct: 176 MLMGDTSDNIPGVDKVGPKTATKWLNEFGSLENLLKNAGSLKG-KVAQNLIEAQSQFDLT 234

Query: 244 RKLVMLRTDVPITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           RKLV ++ D  I+     ++ L+ ++ N   L                            
Sbjct: 235 RKLVTIKKDCDISKWVKSIDDLLPKEKNFDVLKEIYTRFG-------------------- 274

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                         F +       I++  T Q+   E    ++ 
Sbjct: 275 ------------------------------FKTFLKDLESIDNLPTLQRKKDEEKVDIAT 304

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  +     ++  +++++     +    T+++D   ++ + I++ST   K   
Sbjct: 305 EKTIKTNYVLVDTIDKLESCLEEIKQANLVALDTETNSLDQLKTRLVGISLSTDIGK--- 361

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I ++            +  E+L  ++ + E+E   KI  N KYD  V    G
Sbjct: 362 -----AWYIPVAHQVELGCN--QLMKAEVLEAMRSWLESEQKTKILQNAKYDMHVFANEG 414

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536
           I ++G   D M+++YV+D+ +    + +++ K+L     + +EI      +I  D +   
Sbjct: 415 IVLKGIKHDTMVLAYVIDTNQ-RVGLEALSLKYLNRKGLSYEEICGKGAKAITFDYVPLD 473

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           Q  ++A E+++    L   L PKL   + L     L+  ++ V+  ME  G+ ID   L 
Sbjct: 474 QATQYACEDADFTFHLLTELLPKLEGFEGLKFIYDLEMQVLQVLFDMERVGVLIDSSKLL 533

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S  IS  L  LE  I++L+GE+FN++SPKQL +ILFTKLK  +  KT+TG   T    
Sbjct: 534 SQSEIISCRLSKLESEIFNLAGEEFNINSPKQLSEILFTKLKLETQGKTRTGVISTNEDA 593

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D+PI  ++LE+R LSK+KSTY D LP  INK T RVHT +S  + ++GRL+S 
Sbjct: 594 LEKLAL-DHPIAVHLLEYRSLSKLKSTYTDKLPTMINKVTGRVHTVFSQTTVLSGRLSSF 652

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+ + G+++R+AF++    KL+SADYSQ+ELR++AHI+    + + F+   D
Sbjct: 653 DPNLQNIPIRNEDGRQVRQAFVAEDGFKLMSADYSQVELRLMAHISNDEGMLKAFKEGAD 712

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  A+E+FGV + +V    RR AK INF +IYG+  F LA  L I R  A +YI +YF
Sbjct: 713 IHRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMGAFALANNLGISRETAQNYIYKYF 772

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFP + ++++  K    Q+GYVETI+GRRI+   I   K + +   ER AINAP+QGSA
Sbjct: 773 DRFPKVRKFMDDIKIQASQDGYVETIYGRRIYIPGIQDSKGARKAALERVAINAPVQGSA 832

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMISVHK +  +KL ++++LQ+HDELV EV E EI      +   ME       
Sbjct: 833 ADIIKMAMISVHKWISQNKLNSRIILQVHDELVLEVHESEIEILKLKLPKLMEDVA---- 888

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL+  + V +NW E +
Sbjct: 889 KLDVPLEAQVNVGSNWDEAH 908


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/978 (34%), Positives = 525/978 (53%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL           + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKL----PIMYDTEYVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T 
Sbjct: 57  FDAKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   A
Sbjct: 117 AQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ + + +E                                 C AA+   ++ 
Sbjct: 236 QLATIKCDLELDLTVED------------------------------LKCKAADKAYLIE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  + +                                ++ +   +Q    
Sbjct: 266 AYTRYEFKSLLKDLD-----------------------------NSDIKIVTSQAQAADV 296

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S +F   TD+++ + +  + ++    + +       
Sbjct: 297 AIEYITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +      +L  LK  F +   +K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HD+ S++++ L         I  + K    +D++    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTVIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDA-NGRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 NVPLEVNVDSGKSWDQAH 897


>gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/978 (34%), Positives = 527/978 (53%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL           + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKL----PIMYDTEYVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T 
Sbjct: 57  FDAKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   A
Sbjct: 117 AQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ + + +E                                 C AA+   ++ 
Sbjct: 236 QLATIKCDLELDLTVED------------------------------LKCKAADKAYLIE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  + +                                ++ +   +Q    
Sbjct: 266 AYTRYEFKSLLKDLD-----------------------------NSDIKIVTSQAQAADV 296

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S +F   TD+++A+ +  + ++    + +       
Sbjct: 297 AIEYITITTQTQLDDLIAELEKYDSFAFDTETDSLNAYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +      +L  LK  F +   +K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HD+ S++++ L         I  + K    +D++    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDA-NGRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L +VF  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 NVPLEVNVDSGKSWDQAH 897


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/958 (39%), Positives = 532/958 (55%), Gaps = 74/958 (7%)

Query: 27  SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPK 86
             + DG PVNA+ GFCNML +LL    KE   +H AVIFD    TFRNEI P YKA+RP+
Sbjct: 1   MTRDDGTPVNAVFGFCNMLARLL----KEHTGTHLAVIFDAGRTTFRNEIDPRYKAHRPE 56

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
            PE L+PQ  LVR AT+AF +PAIE+ G EADD+IA+Y    +K G    IIS+DKDLMQ
Sbjct: 57  PPEELVPQFALVREATRAFAVPAIELDGVEADDLIASYAEEMKKAGGEAVIISSDKDLMQ 116

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L+     + D +K   I  + V+ K+G+ PE+MV  QAL GDS+DN+PG+PGIG K AA 
Sbjct: 117 LLDAHVSMLDPIKSTPIGPDEVVAKYGVTPEQMVDAQALMGDSVDNVPGVPGIGPKGAAQ 176

Query: 207 LLQEYGNLENILINAS--RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           L+ E+G+LE+IL  A+   +K  KRRE+++ YAE AR+SR+LV LR DVP+ +P++ L +
Sbjct: 177 LIAEFGDLESILAAAASGTMKPSKRRESLVAYAEEARISRRLVELRRDVPLPVPIDELAI 236

Query: 265 EDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDT 324
              +   L  FL A  F  +  R+                                    
Sbjct: 237 APLHDGMLNDFLDAQGFKSIKARLGL---------------------------------- 262

Query: 325 TIKTSQFSSLSDQTSKINSE--QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQ 382
                      D  +K N E                         Y  I +  ++ +W+ 
Sbjct: 263 -----------DGVAKRNGERLAEAAGAADAPAPAAPAADAPFGPYVTIDSEAELDRWIA 311

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           ++   G  +    T  ++  H+K + I+++T   +          +I L         G 
Sbjct: 312 EIRHAGRFAIDTETTGLNPRHAKLVGISVATAPGR--------AAYIPLGHED-----GP 358

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-SMRGFEDIMLMSYVLDSGRS 501
                  L  L     +   LKI HN K+D  VL R G+      +D MLMSY L +GR 
Sbjct: 359 QLPRPLALERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRH 418

Query: 502 SHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            H +  ++   L +      E+  + +S +    +   +   +A E+++V L+LWLLLRP
Sbjct: 419 GHGMDELSALHLDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRP 478

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +L  E  L +YE +++ ++ V+  ME  GI +D+  L+ +SAE ++ +  ++  I  L+G
Sbjct: 479 RLRTEAALALYETMERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREIEKLAG 538

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
             FN  SPKQLG+ILF ++  P G +TKTG W T A  LE++    + +   +LEWRQL 
Sbjct: 539 RAFNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRVLEWRQLQ 598

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+KSTYAD+L   I+   QRVHT +S A T TGRL+S EPNLQNIPI+T  G +IRRAFI
Sbjct: 599 KLKSTYADALVGEIDIADQRVHTSFSQAITTTGRLSSNEPNLQNIPIRTSEGARIRRAFI 658

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P K LISADYSQIELR+LAH+A I  L + F    DIH   AAE+FG+ +E + P +R
Sbjct: 659 AAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAAEVFGLPMEGMDPMVR 718

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R AK INF IIYGIS F LA QL I  SEA  +I  YF R+P I  Y+ +T  F R +GY
Sbjct: 719 RRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNETAEFARTHGY 778

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V T FGRR +   I     + R   ER AINAP+QG AADI +RAM+ +  ++ D  L  
Sbjct: 779 VLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPAAIRDAGLDA 838

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            MLLQ+HDELVFE P+++    +++    M+ A     +L VPL V   +  NW + +
Sbjct: 839 VMLLQVHDELVFEAPKDQAEATAKLACAVMQGAA----SLSVPLLVETGIGANWSDAH 892


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/978 (34%), Positives = 526/978 (53%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL           + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKL----PIMYDTEYVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T 
Sbjct: 57  FDAKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+G+ + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +++   A
Sbjct: 117 AQKLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LVGDTSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ + + +E                                 C AA+   ++ 
Sbjct: 236 QLATIKCDLELDLTVED------------------------------LKCKAADKAYLIE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  + +                                ++ +   +Q    
Sbjct: 266 AYTRYEFKSLLKDLD-----------------------------NSDIKIVTSQAQAADV 296

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S +F   TD+++ + +  + ++    + +       
Sbjct: 297 AIEYITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +      +L  LK+ F +   +K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELGFVLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HD+ S++++ L         I  + K    +D++    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
             +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 VSLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDA-NGRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 NVPLEVNVDSGKSWDQAH 897


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 897

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/978 (34%), Positives = 526/978 (53%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL           + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKL----PIMYDTEYVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T 
Sbjct: 57  FDAKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   A
Sbjct: 117 AQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ + + +E                                 C AA+   ++ 
Sbjct: 236 QLATIKCDLELDLTVED------------------------------LKCKAADKAYLIE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  + +                                ++ +   +Q    
Sbjct: 266 AYTRYEFKSLLKDLD-----------------------------NSDIKIVTSQAQAADV 296

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S +F   TD+++ + +  + ++    + +       
Sbjct: 297 AIEYITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +      +L  LK  F +   +K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HD+ S++++ L         I  + K    +D++    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDA-NGRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L +VF  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 NVPLEVNVDSGKSWDQAH 897


>gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
 gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
          Length = 932

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/976 (33%), Positives = 541/976 (55%), Gaps = 54/976 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L+L+D  S +++ ++A P ++    G P NA+ GF   +  +L+  + +    +     
Sbjct: 4   KLYLIDTFSLLFQVYHAIPPMT-GPSGQPTNAVFGFTRDILMILKQKKPD----YLLCAL 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R++ YP+YK  R ++PE ++PQLP++    +AFGIPA++  G+EADD+IAT  
Sbjct: 59  DSEGPGLRSDWYPEYKIQRTEMPEDMVPQLPMLTEVIEAFGIPAVKHAGWEADDVIATLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             AE  G  V I+S+DKD  QL+S T  +++  K E      + K WG+ P++++  Q+L
Sbjct: 119 RQAEAAGLQVNIVSSDKDCRQLLSETVRMFNCRKGEYFGPPELEKTWGVRPDQVIDFQSL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG+P +G K AA LL+++G+L+++L NA +   KK REN++E+A+ AR+S++
Sbjct: 179 VGDSVDNVPGVPLVGPKKAAALLEQFGDLDSVLANADKAPGKKLRENLVEFADQARVSKR 238

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L TD+P+   LE   + + +  +L        F K  + +                 
Sbjct: 239 LVTLNTDLPLNFDLESARVGNIDVGKLQQLFLDYGFRKFRDDLHEL-------------- 284

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                      + ++  +  +++ Q S     TS   S+   Q       +        +
Sbjct: 285 -----------DGDLTVNIPMRSGQRSLFDSPTSNTGSKAGNQTDTPAVEESTPAPFQTD 333

Query: 366 DSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             ++ I  T ++Q  V   ++        + T ++ A  +  +  A++    +       
Sbjct: 334 RDWSIIRETDELQALVDGWMKDCEEIYIDLETTSVTAMEADIVGWAVAAKPGE------- 386

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I +     Q    +    +E+L   +   EN        NIKYD LV  R+GI ++
Sbjct: 387 -AFYIPVRGPAGQ----QTMDNQEVLDIFRPLLENPRIAISNQNIKYDLLVWKRHGIELQ 441

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540
               D M+  Y+LD+G  SH ++S+A ++L +      E++ + K+   +D+I   QV E
Sbjct: 442 KIGMDPMVGHYLLDAGARSHGLSSLADEFLKHRMIPISELIGTGKNQKRMDEIDIDQVAE 501

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E+++  LQ+  ++R KL  ++L ++Y+ +++P+I V+++ME  GI++D + L + S 
Sbjct: 502 YASEDADAALQIADIIRDKLHEQELWNLYQDVERPLIGVLAEMEFAGIRVDDEELFRQSE 561

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            + + +  L E +  ++   FN  SPKQL ++LF ++  P   +TKTG   +T Q + + 
Sbjct: 562 LVGRRVEELLEELEGMADRPFNPDSPKQLREVLFDEIGLPVQKRTKTG--PSTDQSVLEK 619

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +P+   I+E+RQL+K+K TY DSLP  IN++T R+H  ++     TGRL+S +PNL
Sbjct: 620 LAPLHPLPAKIIEYRQLAKLKGTYLDSLPKLINQQTGRIHASFNQVVAATGRLSSSDPNL 679

Query: 721 QNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIPI+T  G+++R+AFI   P  +L+  DYSQIELR+LAH +    L + F++  DIH 
Sbjct: 680 QNIPIRTPEGRQVRKAFIPGEPGWELLCCDYSQIELRVLAHFSGDAALQEAFQSGKDIHT 739

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            VAAE+F V+   V   MRR AK +NF +IYG SP+ LA  L IP+ +AA++I  YF R+
Sbjct: 740 AVAAEVFEVDEANVDSDMRRVAKAVNFGVIYGQSPYGLAAALNIPQEQAAEFIDDYFMRY 799

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+ ++IE+T     ++GY  T+ GRR     I +     RN+ ER AIN  IQGSAAD+
Sbjct: 800 PGVSQFIEETLEQCARSGYAYTMLGRRRPITGIKNTGGRNRNMPERTAINTVIQGSAADL 859

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++VH+ L    L+ +MLLQIHDELVFE P EE+    +++   M  A      L 
Sbjct: 860 IKLAMLNVHRELATSGLSARMLLQIHDELVFETPVEELEPLRELVHREMVNA----HPLS 915

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V++K   NW + 
Sbjct: 916 VPLVVDMKHGENWYDA 931


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/978 (34%), Positives = 526/978 (53%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL           + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKL----PIMYDTEYVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T 
Sbjct: 57  FDAKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+G+ + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   A
Sbjct: 117 AKNLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ + + +E                                 C AA+   ++ 
Sbjct: 236 QLATIKCDLELDLTVED------------------------------LKCKAADKAYLIE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  + +                                ++ +   +Q    
Sbjct: 266 AYTRYEFKSLLKDLD-----------------------------NSDIKIVTSQAQAADV 296

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S +F   TD+++ + +  + ++    + +       
Sbjct: 297 AIEYITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +    + +L  LK  F +   +K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELEFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HD+ S++++ L         I  + K    +D++    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNYFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++F LSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFKLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDA-NGRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L + F  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 NVPLEVNVDSGKSWDQAH 897


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/999 (33%), Positives = 534/999 (53%), Gaps = 55/999 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            +   LFL+D  + +YRA +A         DG+  +A+ G+ N L  +LQN +     +H
Sbjct: 4   SQPQRLFLLDSMALLYRAHFALIRKPIFTSDGVNTSALFGYANALLDILQNQK----PTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A T R+ ++P YKA R ++PE L   +P  +   +A  IP +E+ G+EADDI
Sbjct: 60  LGAAFDTSAPTPRHTMFPAYKAQREEMPEDLSVAIPAAKRLLKAMRIPVLEVDGWEADDI 119

Query: 121 IATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           I T  + AE  G F   +++ DKD  QLV+  T +Y   ++    E + ++ V ++WG+ 
Sbjct: 120 IGTLAHHAEARGGFETYMVTPDKDFGQLVTENTLIYKPGRQGADTEILGVKEVCERWGVS 179

Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ L  L GD+ DNIPGI G+G KTAA L+Q++G++E +L     I + K ++ + 
Sbjct: 180 NPGQVIDLLGLMGDASDNIPGIAGVGEKTAAKLIQQFGSVEAMLDRVDEI-EGKLKDKVK 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV------ 288
             AE AR+S++L  +  D P+T+ L+ L L   +   L S L   EF  L  R+      
Sbjct: 239 AGAEMARISKQLATIMVDAPLTVQLDDLALLGFDEEALKSILVEFEFNALGRRLFGDDFK 298

Query: 289 -ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
                                 ++KG  ++ ++      +T   ++  D+ S        
Sbjct: 299 AGRGRQLGGGVAPVSAPAPPAKKSKGGDLQGDLFG-AGAETIPVAAAGDEGSAEAMADAA 357

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
               L  L+ +   P     Y  +    + + W++KL  + +  F   TD +D   ++ +
Sbjct: 358 AAPHLPGLKTIRDIP---HRYELVKTADERRAWLEKLAGVDAFCFDTETDGLDPLSARML 414

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            IA S    +          +  +     +           +L  +K F       KIGH
Sbjct: 415 GIAFSIAPHEG--------CYFHIPEERDEHLA--------VLKEVKTFLSTSKAEKIGH 458

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----- 521
           N+K+D  V   +GI + G F D ML+  +++  +  H +  +++++L Y+   I      
Sbjct: 459 NLKFDLRVFLAHGIEVAGPFFDTMLVHALVEPDQ-RHGMDYLSERYLGYSPVSITTLIGE 517

Query: 522 -KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K       + ++    + E+A E+++V LQL   LRP+L    L+ V+  ++ P++ V+
Sbjct: 518 KKGATPQKSMAEVPLEPLAEYAAEDADVTLQLSQKLRPELERLGLMKVFYEIEAPLLPVL 577

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           + ME  G+++D   L++   E+      L E I       FNL+SPKQLG++LF  LK  
Sbjct: 578 AHMEHEGVKVDVPTLEEFGQELLSQANVLRERIQGYVDWPFNLNSPKQLGEVLFDHLKLM 637

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
               KT TGQ++T  Q L  +  G +PII +IL +R+ +K+KSTY D+LP  +N  T RV
Sbjct: 638 EKPKKTATGQYQTNEQTLLTLQ-GRHPIIDDILAYRECTKLKSTYVDALPAAVNPLTHRV 696

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRIL 758
           HT +      TGR+AS +PNLQNIPI+TD G++IR+AF+       L+SADYSQIELR++
Sbjct: 697 HTTFHQLMAATGRMASTDPNLQNIPIRTDQGREIRKAFVPEKEGWVLMSADYSQIELRVM 756

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           A ++    + + F+   DIH+  AA+++GV +++V P+MRR AK +NF IIYGIS F L+
Sbjct: 757 AELSADPAMMEAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYGISAFGLS 816

Query: 819 TQLR-IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
            +L    R+EAA  I+ YF ++PG+  Y+E      R  GYVET+ GRR +  +INS   
Sbjct: 817 QRLGNTSRTEAAQIIENYFKQYPGVKRYMEDIVTQARTQGYVETLTGRRRYLRDINSSNM 876

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           ++R+  ER A+NAPIQG+AAD+ + AM++V +SL +    T+MLLQ+HDEL+FEVP EE+
Sbjct: 877 TVRSATERVAMNAPIQGTAADMIKLAMVNVARSLREGGFKTRMLLQVHDELLFEVPLEEV 936

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                +I   M +A    + L+VP+ V       W E +
Sbjct: 937 DKVKPVIEQGMREA----LPLKVPVLVEAGTGKTWLEAH 971


>gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76]
          Length = 916

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/966 (34%), Positives = 502/966 (51%), Gaps = 72/966 (7%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
              DG P  A+ G  NML +L    R E    + AV+FD     FR++++ +YKA RP +
Sbjct: 6   TAPDGAPTGALYGVLNMLRRL----RSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPM 61

Query: 88  PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           P+ L PQ   +    +  G P + I   EADD+I T      + G  V + + DKD+ QL
Sbjct: 62  PDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQL 121

Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
           V     L +T+  E +DIE V  K+G+ P+++    AL GD +DN+PG+   G KTA   
Sbjct: 122 VDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKW 181

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL----EHLI 263
           L+ YG+L  ++ +AS IK  K  EN+        LS  LV ++TDV +   L    E L 
Sbjct: 182 LEAYGSLAGVMEHASEIKG-KVGENLQAALPQLPLSYDLVTIKTDVDLHAELSDGIESLR 240

Query: 264 LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRD 323
                  +L+   K   F   +                               E E + +
Sbjct: 241 RTTPKWAQLVVDFKRWGFRTWLK------------------------------EAESNMN 270

Query: 324 TTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQK 383
           T      F S S       + + P +   E+             Y  +         + K
Sbjct: 271 TGSTDDLFGSDSIGEQAALNAEMPFEKQAEKA-----TAPEKLDYQAVTTEAQFAALLDK 325

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L    +      T ++DA ++  + I+I+    +         ++I +    +  +  + 
Sbjct: 326 LSRADTIGIDTETTSLDAMNASLVGISIAFQAGE--------AVYIPVGHSLT--AAPEQ 375

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502
              +++L  LK    N    KIG N+KYD+ V   YGI++ G   D ML SY+++S    
Sbjct: 376 LDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYIIESHLG- 434

Query: 503 HDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           H +  ++++WL     T + +       I    ++  Q  E+A ++++  L+L   LR +
Sbjct: 435 HGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQ 494

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           +  EK L +YE+++ P+  V+ +ME  G+QID+  L + SAE+   L+ LE+  Y  +G+
Sbjct: 495 MD-EKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQ 553

Query: 620 KFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
            FNL+SPKQL +ILF K+  P+    KT  G   T    LEQ+   D P+ K IL+ R L
Sbjct: 554 PFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSL 612

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           +K+KSTY D LP  I+ +  RVHT Y+ A  +TGRLAS  PNLQNIPI+T+ G+K+RRAF
Sbjct: 613 AKLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAF 672

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            +P    ++SADYSQIELRI+AH++    L   F+N  D+HR  AAE+FG   E VS + 
Sbjct: 673 TAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQ 732

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           RR+AKTINF +IYG+  + LA  L I    A ++I RYF R+PG+ EY+++TK      G
Sbjct: 733 RRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQG 792

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-- 915
           YVET+FGRR++  +I +  ++ R   ERAAINAP+QG+A+D+ +RAMI V + L + +  
Sbjct: 793 YVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEAS 852

Query: 916 -----LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
                L +K+++Q+HDELV EV E E+    + +   M K       L VPL   + V  
Sbjct: 853 PWDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGL--LDVPLVAEVGVGE 910

Query: 971 NWQEEN 976
           NW+E +
Sbjct: 911 NWEEAH 916


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 897

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/978 (34%), Positives = 526/978 (53%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL           + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKL----PIMYDTEYVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T 
Sbjct: 57  FDAKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   A
Sbjct: 117 AQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ + + +E                                 C AA+   ++ 
Sbjct: 236 QLATIKCDLELDLTVED------------------------------LKCKAADKAYLIE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  + +                                ++ +   +Q    
Sbjct: 266 AYTRYEFKSLLKDLD-----------------------------NSDIKIVTSQAQAADV 296

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S +F   TD+++ + +  + ++    + +       
Sbjct: 297 AIEYITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +      +L  LK  F +   +K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HDI S++++ L         I  + K    +D++    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDIDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDA-NGRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L +VF  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 NVPLEVNVDSGKSWDQAH 897


>gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83]
 gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83]
          Length = 926

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/982 (32%), Positives = 509/982 (51%), Gaps = 70/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + I+RA+YA     R    G    A+ GF   L  +L+    E    H AV+
Sbjct: 4   RLFLLDAYALIFRAYYAFIRSPRIDSTGRDTGAVFGFALTLLDILEKESPE----HIAVV 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  +FR+  Y +YKA R + PE +   +PL++    AF IPA+E+  FEADD I T 
Sbjct: 60  FDPPGGSFRHREYAEYKAQREETPEGIRIAVPLIKEILAAFRIPAVEVPDFEADDTIGTL 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIP-PEKMV 180
              AE++G AV +++ DKD  QLVS    +Y        E      V +K+G+  P +M+
Sbjct: 120 AKQAEEQGLAVRMVTPDKDFGQLVSERIKIYRPKSGGGYETWGPAEVCEKFGLSIPGQMI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS DNIPG  GIG KTA  LL EYG+++ I  +   +K    +  I E  E  
Sbjct: 180 DYLGLVGDSSDNIPGCKGIGAKTAEKLLAEYGSIDGIYAHQDELKGAVAK-KIQEGEEQT 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R SR L  +RTD PI    E       +   +     ALEF  L+ R+ +T         
Sbjct: 239 RFSRYLATIRTDAPIVFDSEAYRRTSPDMAAVRECFAALEFRTLLKRLEST--------- 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                   T+     +   + +     T  F   +D T     + T              
Sbjct: 290 -------PTDAPATDLFAGMVQAQEPPTDLFGEGTDATGLPLKKLT-------------- 328

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  YT +   ++I   ++        SF   TD+ DA  +  +AI +     +   
Sbjct: 329 --DVPHEYTILKTEEEIADCIRMFSATPCFSFDTETDSKDALRANIVAITLCAESGR--- 383

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  FI L             + K  L  L+  F +    K+G N+KYD  VL RYG
Sbjct: 384 -----AFFIPLPE--------DEEIGKRRLDLLRPLFADTAIGKVGQNMKYDIQVLSRYG 430

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I +RG   D M+  Y+L      H++  +A+  L Y      +++ S K  + I ++   
Sbjct: 431 IEVRGQLFDTMIAHYLLFPD-LRHNMDEMAETLLGYCTVHYSDLVGSDKQEVHIRQVPLQ 489

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            + ++A+E++++  QL+  L   L    +  ++E ++ P++ V++ ME +G+++D ++L+
Sbjct: 490 NLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIEMPLVPVLANMERSGVKLDTEVLR 549

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQ 655
           + ++ + + +  +E+ IY L+G  FN++SP Q+G +LF +L+      KTK+G + T  +
Sbjct: 550 RTASGLGEEMQRIEDEIYRLAGHSFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEE 609

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L ++    +PI++ IL++R + K+ STY ++LP       + +HT ++     TGRL+S
Sbjct: 610 ILVKLQ-EKHPIVRLILDYRGIKKLLSTYVEALPEMRYPDGK-LHTSFNQTVATTGRLSS 667

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
             PNLQNIPI+T++G+ +R AF+        +SADYSQIELR++AH+++   L Q F + 
Sbjct: 668 SNPNLQNIPIRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAFLHG 727

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  A++I+ + + +V+  MRR AKT NF IIYGIS F L+ +L I R+EA   I+ 
Sbjct: 728 EDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRTEAKALIEG 787

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+  Y++++    ++ GYV T+FGR+    +INS  + +R   ER AINAPIQG
Sbjct: 788 YFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERNAINAPIQG 847

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + AMI +H+ + + KL ++M+LQ+HDEL F V   E     +++   ME     
Sbjct: 848 SAADLIKLAMIRIHEEITERKLRSRMILQVHDELNFNVLRPEAAEVRELVRSCMEGVMP- 906

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             +LRVPL   I    NW E +
Sbjct: 907 --SLRVPLIAEIGEGANWLEAH 926


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 897

 Score =  870 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/978 (34%), Positives = 526/978 (53%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL           + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNNQ-GEPTGAIIGVINMLKKL----PIMYDTEYVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    +FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T 
Sbjct: 57  FDAKGKSFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   A
Sbjct: 117 AQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ + + +E                                 C AA+   ++ 
Sbjct: 236 QLATIKCDLELDLTVED------------------------------LKCKAADKAYLIE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  + +                                ++ +   +Q    
Sbjct: 266 AYTRYEFKSLLKDLD-----------------------------NSDIKIVTSQAQAADV 296

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S  F   TD+++ + +  + ++    + +       
Sbjct: 297 AIEYITITTQTQLDDLIAELEKYDSFVFDTETDSLNTYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +      +L  LK  F +   +K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HD+ S++++ L         I  + K    +D++    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTTILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDA-NGRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L +VF  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 NVPLEVNVDSGKSWDQAH 897


>gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4]
 gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4]
          Length = 956

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/999 (34%), Positives = 527/999 (52%), Gaps = 74/999 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +    LVDGS +++R ++A P   +   GL  NAI G  N L KL++        +H 
Sbjct: 8   KNQPPFILVDGSYYLFRTYHALPKTMQNSQGLVTNAIRGTLNALLKLMRRYH----PTHM 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  + TFR+ +  +YKANRPK+   L  Q+P +     A GIP + I+G EADDII
Sbjct: 64  AVCFDTKSPTFRHAMSEEYKANRPKMDIELAEQIPYIHRLVTALGIPLLRIEGAEADDII 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T  Y A  EG  V I + DKD+MQL++    L D+   +  D   V++K+GI P++M+ 
Sbjct: 124 GTLAYRAVAEGHHVVISTGDKDMMQLINDCVILEDSFTGKITDSTGVVEKFGINPDQMID 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L GDS D I G+PGIG KTA  LL EYGN++N+L N + IK  +  +N+LEYA+   
Sbjct: 184 FLTLMGDSSDGIKGVPGIGKKTAKDLLNEYGNIDNMLKNVANIKG-RAGKNLLEYADDIP 242

Query: 242 LSRKLVMLRTDVPITIPLEHLIL---EDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           ++ +L  + TD+ +    + L +      +   L +    LEF   +             
Sbjct: 243 MNAQLATIVTDLEVGQDWQDLKINTDPCAHIDELRALYSELEFRNEL------------- 289

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                +D          S    Q    +  Q  + L    +  +
Sbjct: 290 -------------------ASLDHPNHPANGAQSVAHSQADTESQAQIAKSLQSSAIGDV 330

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +    ++ ++  I++       VQ L +         T ++    ++ + ++ +    + 
Sbjct: 331 TDSKSHDRAWHTILDEPAFDNLVQLLASAPHFVIDTETTSVYWRQAELVGLSFAVQAHE- 389

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    +I L+     D   +  L ++ +L  LK   EN    KIG ++KYD  +L 
Sbjct: 390 -------AYYIPLTHSLEGDELTEKQLDRDTVLVRLKSILENSSIGKIGQHLKYDAHILS 442

Query: 478 RYGISMRG---------FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRK 525
            Y I++ G           D ML SYV+++  + H +  +A+ +L     + +++     
Sbjct: 443 LYDINLLGNIHDKPNNWAMDTMLASYVINAAVTRHGMDDLARHYLQTQTISFEDVAGKGA 502

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQME 584
             +  D+++     ++A E++++  QL+ L   KL  +     +   L+ P  +++ QME
Sbjct: 503 KQVSFDQVAIDIASDYACEDADITYQLFELFSQKLADDTNNAKLLHALEIPTAEILCQME 562

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI I +  L ++S    + +++LE+  Y+++GE+FNL SPKQLG++LF KL    G K
Sbjct: 563 AHGILIKRPFLNELSKRFDEEIIALEKRAYEVAGEEFNLGSPKQLGEMLFDKLGVAGGKK 622

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQ+ T       ++  D+P++   LE+R LSK+KSTY D+L N  +  T RVHT Y 
Sbjct: 623 TKTGQYSTGEAV---LSKIDHPLVDITLEYRGLSKLKSTYTDALDNVADSETDRVHTSYH 679

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A T TGRL+S +PNLQNIPI+T  G+ IR+AFI+P  + +++ADYSQIELR++AH +  
Sbjct: 680 QALTSTGRLSSTDPNLQNIPIRTATGRLIRQAFIAPEGRVILAADYSQIELRLMAHFSGD 739

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F   LDIH   AAE+ G  +  V+   RR+AK INF ++YG+S F LA QL++ 
Sbjct: 740 KNLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAINFGLLYGMSAFGLAKQLQMS 799

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           RSEA DYI  YF R+PG+ +Y+  T+    ++GYVETI GR+++  +IN     ++   E
Sbjct: 800 RSEAQDYIDMYFERYPGVKDYMINTRASAYEHGYVETILGRKLYTPDINHSNRMVKQGAE 859

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAAINAP+QGSAAD+ + AMI+V K L  H+   KMLLQ+HDELVFEV   ++   SQ+I
Sbjct: 860 RAAINAPLQGSAADLIKLAMIAVDKVLPKHQ--AKMLLQVHDELVFEVDANKVDEISQLI 917

Query: 945 VHSMEKAC-------LPKINLRVPLKVNIKVSNNWQEEN 976
             +M+             +N  VPL V      NW E +
Sbjct: 918 TDAMQNVLTATAVEKGWNVNFAVPLLVETDSGQNWDEAH 956


>gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355]
          Length = 908

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/959 (34%), Positives = 499/959 (52%), Gaps = 66/959 (6%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
              DG P  A+ G  NML +L    R E    + AV+FD     FR++++ +YKA RP +
Sbjct: 6   TAPDGAPTGALYGVLNMLRRL----RSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPM 61

Query: 88  PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           P+ L PQ   +    +  G P + I   EADD+I T      + G  V + + DKD+ QL
Sbjct: 62  PDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQL 121

Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
           V     L +T+  E +DIE V  K+G+ P+++    AL GD +DN+PG+   G KTA   
Sbjct: 122 VDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKW 181

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL----EHLI 263
           L+ YG+L+ ++ +AS IK  K  EN+        LS  LV ++TDV +   L    E L 
Sbjct: 182 LEAYGSLQGVMEHASEIKG-KVGENLRAALPRLPLSYDLVTIKTDVDLHAELSDGIESLR 240

Query: 264 LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRD 323
                  +L+   K   F   +                               E E + +
Sbjct: 241 RTAPKWAQLVVDFKRWGFRTWLK------------------------------EAESNMN 270

Query: 324 TTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQK 383
           T      F S S       + + P +   E+             Y  +         + K
Sbjct: 271 TGSTDDVFGSDSIGEQAALNAEMPSEKQAEKA-----TAPERLDYQAVTTEAQFAALLDK 325

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L    +      T ++DA ++  + I+I+    +         ++I +    +  +  + 
Sbjct: 326 LSRANTIGIDTETTSLDAMNASLVGISIAFQAGE--------AVYIPVGHSLT--AAPEQ 375

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502
              +++L  LK    N    KIG N+KYD+ V   YGI++ G   D ML SY+++S    
Sbjct: 376 LDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYIIESHLG- 434

Query: 503 HDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           H +  ++++WL     T + +       I    ++  Q  E+A ++++  L+L   LR +
Sbjct: 435 HGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQ 494

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           +  EK L +YE+++ P+  V+ +ME  G+QID+  L + SAE+   L+ LE+  Y  + +
Sbjct: 495 MD-EKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQ 553

Query: 620 KFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
            FNL+SPKQL +ILF K+  P+    KT  G   T    LEQ+   D P+ K IL+ R L
Sbjct: 554 PFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSL 612

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           +K+KSTY D LP  I+ +  RVHT Y+ A  +TGRLAS  PNLQNIPI+T  G+++RRAF
Sbjct: 613 AKLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAF 672

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            +P    ++SADYSQIELRI+AH++    L   F+N  D+HR  AAE+FG   E VS + 
Sbjct: 673 TAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQ 732

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           RR+AKTINF +IYG+  + LA  L I    A ++I RYF R+PG+ EY+++TK      G
Sbjct: 733 RRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQG 792

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           YVET+FGRR++  +I +  ++ R   ERAAINAP+QG+A+D+ +RAMI V   L D  + 
Sbjct: 793 YVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSD-GIG 851

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +K+++Q+HDELV EV E E+    + +   M K       L VPL   + V  NW+E +
Sbjct: 852 SKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGL--LDVPLVAEVGVGENWEEAH 908


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score =  868 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/985 (32%), Positives = 517/985 (52%), Gaps = 41/985 (4%)

Query: 5   NHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFLVD  + I++ +YA      R  +G+  + + GF   L  + +  R +       V
Sbjct: 2   KKLFLVDAYALIFKYYYAFLGRPMRNREGMNTSVVFGFVKFLRDIQKRERPDL----LGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR +I+P+YKANR + PE +L  +P V+    A  IP +E+ G+EADD+I T
Sbjct: 58  AFDPKGGSFRRDIFPEYKANRSETPEDILLSIPYVKRVLDAMCIPILEVAGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKM 179
            +    + G+ V +++ DKD  QLV     +Y     E     +D E + +K+GI   ++
Sbjct: 118 LSQKGVEAGYDVYMVTPDKDYGQLVRDNCRIYKQRGAEGSIEIVDREAIREKYGIDDPQL 177

Query: 180 V-CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           V  + AL GD+ DNIPG+PGIG K A  L++E+G +ENIL N  +I   K+ E I  +A+
Sbjct: 178 VRDILALWGDASDNIPGVPGIGEKIACKLVREWGTVENILENVGKIPG-KQGEKIAGWAD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             RL+++L  +  DVPI    E L + D +  +L      L+F   +N +      +   
Sbjct: 237 NLRLAKRLTTICLDVPIPFREEDLTVCDPHIDQLRGIFAELDFKAFMNDLTNLAPAEPLP 296

Query: 299 IEP-VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             P         E                + + F                +        +
Sbjct: 297 EGPRQEAQTQLAEMARAKSAAAKKAALAGQGNLFGDPVVPLPAAQEVPVAELQAEAEAIQ 356

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     YT +     +++ V  +       F   T   D F+ + + ++++     
Sbjct: 357 FRTAQTTPHEYTLVETAAQLREVVAAVGRYPEFCFDTETTGFDIFNDRIVGLSLAVEP-- 414

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +  ++                T E    ++  FE+E   KIG NIK+D +VL 
Sbjct: 415 ------FKAWYVPF----------LEKDTPEYAEIVRPLFEDEKIAKIGQNIKFDLMVLR 458

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKI 533
           R GI++RG   D M++ Y+LD   S H++ ++A+K+L+Y   E   ++      + +D +
Sbjct: 459 RLGITIRGRMYDTMILHYLLDP-ESRHNMNALAEKYLNYKPIEIETLIGKGSKQLTMDLV 517

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  +V+E+A E+++V LQL   L P +    L H+Y  +++PMI V++ +E+ G++ID +
Sbjct: 518 NVERVKEYAAEDADVTLQLKQALYPMIEQIGLQHLYFEIEEPMIAVLADIEMAGMRIDSE 577

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            L   + E+++ L  LE  I   +GE   N++S +QLG++LF K++     K    +   
Sbjct: 578 ALAVYAVELNRKLAELEAAIRTEAGEPNLNINSARQLGEVLFGKMRIAEKPKMTKTKQFC 637

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +D  Q+    + I+  ILE+R + K+ STY ++LP  +N+ T R+HT ++ A T TGR
Sbjct: 638 TDEDYLQLFARKHRIVDLILEYRGVKKLLSTYVEALPQLVNRSTGRIHTSFNQAVTATGR 697

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIP++ D+G++IR+AFI       L+SADYSQ+ELR++AH++    L   F
Sbjct: 698 LSSTNPNLQNIPVRDDMGRRIRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLIAAF 757

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           E+  DIH   AA++F   +++V+ + RR AKT NF IIYGIS F L+ +L IPR EA + 
Sbjct: 758 EHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQRLEIPRKEAKEI 817

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  +PG+ +Y++      ++ G+V TIFGRR + ++I S  +  R + ER A+NAP
Sbjct: 818 IDGYFASYPGVKKYMDNVVEKAKEEGFVSTIFGRRRYLNDIASHNAIARGLAERNAVNAP 877

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI+VH+      + ++++LQ+HDELV ++   E    + I+   ME A
Sbjct: 878 IQGSAADIMKIAMINVHRRFAAEGIRSRVILQVHDELVVDMLRSEQERVTAIVTECMESA 937

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+V L  +  V  NW E +
Sbjct: 938 A----QLKVRLIADAGVGGNWLEAH 958


>gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
 gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
          Length = 926

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/982 (32%), Positives = 508/982 (51%), Gaps = 70/982 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + I+RA+YA     R    G    A+ GF   L  +L+    E    H AV+
Sbjct: 4   RLFLLDAYALIFRAYYAFIRSPRIDSTGRDTGAVFGFALTLLDILEKESPE----HIAVV 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  +FR+  Y +YKA R + PE +   +PL++    AF IPA+E+  FEADD I T 
Sbjct: 60  FDPPGGSFRHREYAEYKAQREETPEGIRIAVPLIKEMLAAFRIPAVEVPDFEADDTIGTL 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIP-PEKMV 180
              AE++G AV +++ DKD  QLVS    +Y        E      V +K+G+  P +M+
Sbjct: 120 AKQAEEQGLAVRMVTPDKDFGQLVSERIKIYRPKSGGGYETWGPAEVCEKFGLSIPGQMI 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS DNIPG  GIG KTA  LL EYG+++ I  +   +K    +  I E  E  
Sbjct: 180 DYLGLVGDSSDNIPGCKGIGAKTAEKLLAEYGSIDGIYAHQDELKGAVAK-KIQEGEEQT 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R SR L  +RTD PI    E       +   +     ALEF  L+ R+ +T         
Sbjct: 239 RFSRYLATIRTDAPIVFDSEAYRRTSPDMAAVRECFAALEFRTLLKRLEST--------- 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                    +     +   + +     T  F   +D T     + T              
Sbjct: 290 -------PADAPATDLFAGMVQAQEPPTDLFGEGTDATGLPLKKLT-------------- 328

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  YT +   ++I   ++   +    SF   TD+ DA  +  +AI +     +   
Sbjct: 329 --DVPHEYTILETEEEIADCIRMFSSTPCFSFDTETDSKDALRANIVAITLCAESGR--- 383

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  FI L             + K  L  L+  F +    K+G N+KYD  VL RYG
Sbjct: 384 -----AFFIPLPE--------DEEIGKRRLDLLRPLFADTAIGKVGQNMKYDIQVLSRYG 430

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           I +RG   D M+  Y+L      H++  +A+  L Y      +++ S K  + I ++   
Sbjct: 431 IEVRGQLFDTMIAHYLLFPD-LRHNMDEMAETLLGYRTIHYSDLVGSDKQEVHIRQVPLQ 489

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            + ++A+E++++  QL+  L   L    +  ++E ++ P++ V+  ME +G+++D ++L+
Sbjct: 490 NLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIEMPLVPVLVDMERSGVKLDTEVLR 549

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQ 655
           + ++ + + +  +E+ IY L+G  FN++SP Q+G +LF +L+      KTK+G + T  +
Sbjct: 550 RTASRLGEEMQRIEDEIYRLAGHSFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEE 609

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L ++    +PI++ IL++R + K+ STY ++LP       + +HT ++     TGRL+S
Sbjct: 610 ILVKLQ-EKHPIVRLILDYRGIKKLLSTYVEALPEMRYPDGK-LHTSFNQTVATTGRLSS 667

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
             PNLQNIPI+T++G+ +R AF+        +SADYSQIELR++AH+++   L Q F + 
Sbjct: 668 SNPNLQNIPIRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAFLHG 727

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  A++I+ + + +V+  MRR AKT NF IIYGIS F L+ +L I R+EA   I+ 
Sbjct: 728 EDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRTEAKALIEG 787

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+  Y++++    ++ GYV T+FGR+    +INS  + +R   ER AINAPIQG
Sbjct: 788 YFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERNAINAPIQG 847

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + AMI +H+ + + KL ++M+LQ+HDEL F V   E     +++   ME     
Sbjct: 848 SAADLIKLAMIRIHEEITERKLRSRMILQVHDELNFNVLRPEAAEVRELVRSCMEGVMP- 906

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             +LRVPL   I    NW E +
Sbjct: 907 --SLRVPLIAEIGEGANWLEAH 926


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/987 (33%), Positives = 526/987 (53%), Gaps = 66/987 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  LFL+D  + IYRA +A     R    GL  +A  GF N L +++   +     SH
Sbjct: 4   TNKPKLFLLDALALIYRAHFAFIKNPRITSKGLNTSATLGFTNTLVEVITKEK----PSH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A T R+  +P YK +RP  PE +   +P V+   +AF IP + ++G+EADDI
Sbjct: 60  IIVAFDTGAPTHRHTAFPAYKEHRPSQPEDITVAIPYVKKILKAFRIPVLLLEGYEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           I T    A  +GF V +++ DKD  QLV     +Y           +D + V++KWGI  
Sbjct: 120 IGTLARQAAVQGFEVYMMTPDKDFAQLVDDHIYIYKPAFMGNGVAILDRQAVLEKWGISN 179

Query: 177 -EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            +++  L AL GD++DNIPGIP IG KTA  L+Q++G LEN+L NA ++   K +EN+++
Sbjct: 180 VDQIRDLLALQGDAVDNIPGIPSIGIKTAQKLIQQFGTLENLLANADQLTG-KLQENVVK 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           YA+   LS++L  + T+VPI    E    +  +   L    + LEF  L  R+       
Sbjct: 239 YAQQGILSKELATIHTEVPIQFDAEESRYQGPDPVALKEIFQELEFNSLTRRLL------ 292

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                  E + +T       ++L D T           ++L+  
Sbjct: 293 ----------------------GEDNYNTKRTPGTQANLFDFTPTDQPTAETASVYLDPA 330

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y  I      Q  +  L+   +  F   T ++D + ++ + I+ +   
Sbjct: 331 PFR-NIYTTKHQYYLIDTPSLRQNLINYLKLQDTFCFDTETTSLDPYQAQLVGISFA--- 386

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                 +  E  ++ +          +    + I+   +   E+    K+G N+KYD L+
Sbjct: 387 -----YYPGEAYYVPIP--------AERKAAQAIIEEFRPLLESTTQCKVGQNLKYDNLI 433

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS-SIPI 530
           L  YGI +     D M+  Y++   +  H++ +IA+ +L+Y     + ++ SRKS    +
Sbjct: 434 LRTYGIEVAPPIFDTMVAHYLVAPDK-PHNMNAIAESYLNYAPIPIEALIGSRKSTQKSM 492

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V+E+A E++++ LQL  LL   +  E L  ++  ++ P++ V++ ME  G+QI
Sbjct: 493 RMVDVELVKEYACEDADITLQLKRLLELNIKQENLSKLFYEIEIPLVQVLTAMEYQGVQI 552

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L+++S  +   L +LE+ I+ L+G  FN+SSPKQLG+ILF KLK     K      
Sbjct: 553 DTQVLREISVTLGTELAALEKEIHRLAGHAFNISSPKQLGEILFDKLKIAGNNKKTKSGQ 612

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             T + +      D+PI  NIL++R+L K+KSTY D+L + I+    +VHT Y+     T
Sbjct: 613 YATGELVLADLTKDHPIAANILDYRELQKLKSTYVDALIDLISPFDGKVHTSYNQTVVTT 672

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIPI+T+ G+ IR+AF+   P   L+SADYSQIELRI+A  ++   + +
Sbjct: 673 GRLSSTNPNLQNIPIRTEKGRAIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIE 732

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   DIH   A+++F V +E+V   MRR AKT NF IIYGIS F LA +L I RSEA 
Sbjct: 733 AFKAGKDIHTATASKLFKVPLEQVDESMRRQAKTANFGIIYGISGFGLAQRLGISRSEAI 792

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I+ YF  F  I  Y+++     R+ GYV T+ GR+ +  +INS  S++R  +ER AIN
Sbjct: 793 ATIQAYFQEFHAIKAYMDRVIGQAREQGYVTTLMGRKRYLRDINSRNSTLRGFDERNAIN 852

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AA++ + AM+ +++ L+  KL +K++LQ+HDELVF+VP+ EI    + + + M+
Sbjct: 853 TPIQGTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHDELVFDVPQHEIEIMREHVAYFMK 912

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            +        VP++V I +  NW+E +
Sbjct: 913 NSLPLAG---VPVEVQIGLGKNWEEAH 936


>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
 gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
          Length = 939

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/993 (35%), Positives = 529/993 (53%), Gaps = 71/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           MQK+  LFL+D  + IYRA+YA     R    G   NA  GF + L  L+   +     +
Sbjct: 1   MQKK--LFLLDAMALIYRAYYALIRNPRLTSTGRNTNAQFGFTSTLLDLINKEK----PT 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD  A T R+  + DYKANR   PE +L  L  ++   + F IP +E+ G+EADD
Sbjct: 55  HMAVAFDTHAPTERHTTFVDYKANRMDAPEDILDSLDDIKRIIKGFNIPVVELDGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIP 175
           +I T  + A   G+ V +++ DKD  QLV     +Y       KEE +  + V +KW I 
Sbjct: 115 VIGTLAWQAADAGYDVYMVTPDKDYGQLVRNNVFIYKPPYMGNKEEILGPKEVCEKWQIT 174

Query: 176 P-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
              +++ +  L GD++DNIPGIPG+G KTA  LL +Y ++E ++ NA +I   K  E I 
Sbjct: 175 DVHQVIDILGLMGDAVDNIPGIPGVGEKTAMKLLSQYHSVEEVIANADKI-GGKMGEKIK 233

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----AT 290
             AE+A LS++L  + TDVP+T   E   ++D N  +LI     LEF  L  R+      
Sbjct: 234 AGAESAVLSKQLATIITDVPVTFHEEDFCIKDPNREQLIEVFTELEFKTLGKRILGDGFA 293

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T   + A    V LD+   E +G A           + +Q   LS   +  N   TP   
Sbjct: 294 TPAAEPATPPKVQLDLFGNEIQGAAPPV-------SEEAQDVPLSIMVADKNINNTP--- 343

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                           +Y      +   + ++ L      SF   T   DA     + ++
Sbjct: 344 ---------------HNYILADTPEKRAELLELLLKQQEISFDTETTGTDANAVDLVGMS 388

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            S    +          +I +    +Q         + I+      F   H   IG NIK
Sbjct: 389 FSIKAGEG--------WYIPVPADKAQ--------AQAIVDSFLPLFNTTHITLIGQNIK 432

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRK 525
           YD +V+  YG+   G   D ML  Y+++       +  ++ ++L Y    I     K  K
Sbjct: 433 YDMIVMKWYGVEFNGPVFDTMLAHYLIEP-EGRRGMDLLSAQYLQYEPVSIETLIGKKGK 491

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
               +  +   +++E+A+E++++ LQL     P L ++ +  V+  ++ P++ V++ ME 
Sbjct: 492 GQGNMRDVEIDKIKEYAVEDADITLQLKEKFAPLLPLKAVDKVFYDVENPLVRVLTDMEY 551

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAK 644
            GI +D   L   S E+   +   EE++Y  +G +FNL+SPKQLG++LF KL   P   K
Sbjct: 552 EGIALDIQALSDYSRELETEIKRAEESVYTQAGVRFNLASPKQLGEVLFEKLLLDPKAKK 611

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQ+ T    L ++    + I+++IL +R+LSK+KSTY D+LP  +NKRT RVHT Y+
Sbjct: 612 TKTGQYATGEDVLAKL-ANKHQIVEDILVFRELSKLKSTYVDALPLMLNKRTNRVHTSYN 670

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAK 763
            A  +TGRL+S  PNLQNIPI+TD G+++R+AF++      L+SADYSQIELRI+A I+ 
Sbjct: 671 QAVAVTGRLSSNNPNLQNIPIRTDRGREVRKAFVAKNEDYVLMSADYSQIELRIIAAISG 730

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              +   F   LDIH   AA+++GV +  V+  MRR+AK++NF IIYG+S F L+  L I
Sbjct: 731 DVHMIDAFRQGLDIHAATAAKVYGVELADVTADMRRNAKSVNFGIIYGVSAFGLSENLGI 790

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EA   I  YF ++P I +Y++      +QNGYVET+ GR+    +INS  + +R   
Sbjct: 791 ARGEAKTLIDNYFAQYPSIKKYMDDQIKSAQQNGYVETLLGRKRWLKDINSSNAVVRGYA 850

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN PIQG+AAD+ + AMIS+HK+L+   L ++M+LQ+HDELVF+V ++EI     +
Sbjct: 851 ERNAINMPIQGTAADMIKLAMISIHKTLKKENLRSRMILQVHDELVFDVHKDEIEQIKPL 910

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           I   M  A    + L VP+ V I +  NW + +
Sbjct: 911 IQDGMRNA----LPLAVPVDVEIGIGVNWLQAH 939


>gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
 gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
          Length = 946

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/985 (34%), Positives = 532/985 (54%), Gaps = 53/985 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+D  + IYRA +A     R    G+   A+ GF N L ++L   +     +H  V
Sbjct: 2   KKLFLLDAMALIYRAHFAFSKNPRVTSTGISTGAVFGFTNSLLEILLKEK----PTHIGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YKANR + PE +   +P +    +   IP + + G+EADDI+ T
Sbjct: 58  AFDLQGPTFRHDNFTEYKANRQEQPEDISVAIPYIYRLLEGMNIPILGVPGYEADDIVGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI-PPEK 178
           ++ IA   GF V +++ DKD MQLV+    LY         E  DI  V+ K+ I   ++
Sbjct: 118 FSKIAPPLGFDVYMMTMDKDYMQLVNEHVFLYRPAYMGNDVEIYDINKVLAKFNIKEVDQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  +  L GD++DNIPGIPGIG KTA  L+ ++G++EN++ NA ++K  K++EN++ +A 
Sbjct: 178 VRDILGLQGDTVDNIPGIPGIGEKTAQKLIADFGSVENLIKNADQLKG-KQKENVINFAA 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS++L  +  +VPI    E L +++ N   L      LEF  L  R+       +  
Sbjct: 237 QGLLSKELATIHCEVPIEFDEEALRVKEYNIEALDQLFDELEFRTLKKRLFGNSSSASET 296

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                        K +  +          T Q      + ++  +E+  +K   +     
Sbjct: 297 ------------EKKMETKATKKSAAVSSTGQMGLFGMEAAETITEEFDEKGESKETIVR 344

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +    +I +    L    S  F   T +++A  ++ + +AIS   ++ 
Sbjct: 345 DTIDTVLHDYYVVDTEAEIVRLTNLLLLQESFCFDTETTSLNALEAELVGLAISFRAKE- 403

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I          T     T+ IL  L+  FE     K+G N+KYD LVL +
Sbjct: 404 -------AYYIPF--------TSDQIQTQRILDLLQPAFEKSSITKVGQNLKYDLLVLKK 448

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKI 533
           Y  ++ G   D ML  Y+L+     H + ++A+ +L+YT   I     K       +  +
Sbjct: 449 YNFAIAGPLFDTMLAHYLLEP-EMRHGMDTLAEVYLNYTPVSIEQLIGKKGAKQGTMRDV 507

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               ++E+A E++++  QL+    P +  + L  ++  ++ P+ +V++ ME+ G++ID  
Sbjct: 508 EIEAIKEYAAEDADITFQLYKFFSPLVKDQNLNPLFNEVEMPLSEVLADMELEGVKIDTQ 567

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKT 652
            L + S+ +   + ++E+ IY+ +G +FN+SSPKQLG+ILF KLK  P+  KTKTGQ+  
Sbjct: 568 ALSEFSSLLQTEITAVEKEIYEHAGVQFNISSPKQLGEILFDKLKLDPNAKKTKTGQY-A 626

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +D+      D+PI+ NIL++R+  K+KSTY D+LP  + K   RVHT ++ A   TGR
Sbjct: 627 TGEDVLTKLDSDHPILANILDYREFQKLKSTYVDALPLLLGKDG-RVHTSFNQAVAATGR 685

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIPI+TD G++IRRAF++      ++SADYSQIELRI+A  +K   +   F
Sbjct: 686 LSSTNPNLQNIPIRTDRGKEIRRAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAF 745

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              +DIH   A+++F V IE V+  MRR AK +NF IIYGIS F L+ +L IPR EAA+ 
Sbjct: 746 RKGVDIHSTTASKVFKVPIEDVTADMRRKAKMVNFGIIYGISAFGLSQRLSIPRKEAAEI 805

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  FP +  Y++   N  R+  YVETI GRR    +INS   ++R   ER AINAP
Sbjct: 806 ITAYFTEFPAVKAYMDACVNSAREVEYVETILGRRRFLRDINSRNMTMRGFAERNAINAP 865

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AMI +H  ++   L +KM+LQ+HDEL+F+  ++EI      +   M++A
Sbjct: 866 IQGSAADMIKVAMIRIHDWMKKENLKSKMVLQVHDELLFDAHKDEIDLLKTQVEIFMKEA 925

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               I L VP++V + +  NW E +
Sbjct: 926 ----IALDVPMEVGMGIGENWLEAH 946


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 897

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/978 (35%), Positives = 529/978 (54%), Gaps = 88/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDGSS+++RA++A P L+    G P  AI G  NML KL           + AV+
Sbjct: 2   KKIVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKL----PIMYDTEYVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR+++YP YKA+R  I + L  Q+  +    +  G   I   G EADD+I T 
Sbjct: 57  FDAKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +K+ + + I + DKD+ QLV+    LYD++K    D+  V++K+ I P +M+   A
Sbjct: 117 AQKLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPGIP +G KTA   LQ+Y N++ I+ N  +IK  K  EN+    +  +LS 
Sbjct: 177 LMGDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIKG-KVGENLRNNIDLLKLSY 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D+ +      L +ED                           C AA+   ++ 
Sbjct: 236 QLATIKCDLEL-----DLTVED-------------------------LKCKAADKAYLIE 265

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                E K +  +   + D  I TSQ                            +Q    
Sbjct: 266 AYTRYEFKSLLKDL-YNSDIKIVTSQ----------------------------AQAADV 296

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   + +LE   S +F   TD+++ + +  + ++    + +       
Sbjct: 297 AIEYITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCAKEGR------- 349

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L          +      +L  LK  F +   +K+ HN K+D+ VL +Y I + 
Sbjct: 350 -AFYIPLQHRYL--GVPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEIN 406

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  +D M+M+YVL S    HD+ S++++ L         I  + K    +D++    V +
Sbjct: 407 GKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAK 465

Query: 541 HAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E++++  +L+   +  L  +K L  +Y  L+ P+  +++QME TG++ID   L Q S
Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A +  ++  LE   Y+L+G++FNLSSP QL +ILF KL  P   KT  GQ  T+ + L Q
Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D  I   I+++R LSK+K+TY D LP  ++    RVHT Y+   T+TGRL+S +PN
Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDA-NGRVHTSYNQTGTVTGRLSSSDPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK+  G+KIR AFI+     +++ADYSQIELRI+AH++K   L +VF  +LDIH 
Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI  YF+R+
Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+   K F +QNGYVETI GRR++  EINS     RN  ERAAINAP+QG+AADI
Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823

Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++AMI+V+  + +++    KM++Q+HDELVFEV + ++      I   ME A    + L
Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+VN+    +W + +
Sbjct: 880 NVPLEVNVDSGKSWDQAH 897


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/988 (32%), Positives = 528/988 (53%), Gaps = 63/988 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q +  LFL+D  + IYRA++A     R    G   +AI GF N L ++L   +     SH
Sbjct: 5   QTDKKLFLLDAFALIYRAYFAFSSNPRINSKGFNTSAIFGFTNTLLEILTKEK----PSH 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    T R+  +  YKANR ++PE L   +P++    + F I  + ++G+EADD+
Sbjct: 61  IAVVFDMEGPTQRHIEFETYKANREEMPEDLRKSIPIIIEMIKGFNIEVLGLEGYEADDV 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176
           I T    AEK GF   +++ DKD  QLV   T +Y   +     E +  E + KKW I  
Sbjct: 121 IGTLAIKAEKAGFTTYMMTPDKDYGQLVDENTFIYKPARLGNGAEILGTEEICKKWEIRN 180

Query: 177 -EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++ +  L GD +DNIPGIPG+G KTA  L++++G++EN+L N  ++K  K +E +  
Sbjct: 181 VAELIDILGLMGDKVDNIPGIPGVGEKTAIQLIKDFGSIENLLENTDKLKG-KLKEKVEN 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A  S++L  +  D PI +  E L + + N P L+   + LEF  +  +V    D  
Sbjct: 240 NKEMAIQSKRLATIILDCPIELDEEKLTIREPNKPLLLEVFRELEFRAIAQKVL-GEDIG 298

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                PV                E  +  + +   FS   +     +    P     + +
Sbjct: 299 GKEKLPV----------------EKPKANSAQGDLFSPPDEAVLSNDKSSEPTPTNFKTI 342

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +         Y  +   + I + +  L       F   T +++   ++ + ++ +   
Sbjct: 343 NDVEHV------YELVDTEEKINKLLTLLNQQSEFCFDSETTSLNTLEAEIVGLSFAVKS 396

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                       ++    +  +         +  ++  +  FE++    IG NIKYD  V
Sbjct: 397 --------FSAYYVPFPANREE--------AQAKINAFRSLFEDDTKTLIGQNIKYDFQV 440

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPI 530
           L  YGI ++    D M+  +++      H++  +AQ +L+Y+   I     K  K    +
Sbjct: 441 LKNYGIEIKNKLFDTMVAHFLIMP-EMRHNMDILAQTYLNYSPVSIETLIGKKGKEQTSM 499

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +   +++E+A E+++V  QL     PKLI  ++  ++  ++ P+I V++ +E  GI +
Sbjct: 500 RDVEIEKIKEYAAEDADVTFQLKTAFAPKLIENEVEKLFTEVEVPLIKVLANIEREGINL 559

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D   LK+ S ++  +++ +E+ I D +G KFN+SSPKQ+G+ILF  LK      KTKTGQ
Sbjct: 560 DVPALKEFSGQLQNDIIIVEKEIQDFAGTKFNVSSPKQVGEILFDYLKIVDKPKKTKTGQ 619

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  T +D+       +PI+  IL++R+L K+K+TY D+LP  +N++T+R+HT ++    +
Sbjct: 620 Y-ATGEDVLSKLENAHPIVSKILDYRELVKLKNTYVDTLPELVNEKTKRIHTSFNQVVAV 678

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+T+ G++IR+AFI       L+SADYSQIELRI+A I+    + 
Sbjct: 679 TGRLSSDNPNLQNIPIRTERGRQIRKAFIPRDSDHVLLSADYSQIELRIVASISGDKNMC 738

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F+   DIH   AA++FGV    V+ +MR  +K++NF IIYG   F L+  L I R+EA
Sbjct: 739 EAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVNFGIIYGQGAFGLSENLNISRTEA 798

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF  +  I  Y+++T NF R+NGYV+T+ GR+    +I S  +++R+  ER AI
Sbjct: 799 KELIDNYFKEYGAIKSYMDRTINFARENGYVKTLLGRKRWLRDITSANATVRSYAERNAI 858

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAAD+ + AMI+++  LE     TKMLLQ+HDELVF+V + E+     II   M
Sbjct: 859 NAPIQGSAADMIKVAMINIYNELEKQNFKTKMLLQVHDELVFDVYKPELEKVKPIIEKLM 918

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +A    + L VP++V +   +NW   +
Sbjct: 919 REA----LPLDVPVEVGLGTGDNWLAAH 942


>gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134]
 gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134]
          Length = 955

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1001 (33%), Positives = 535/1001 (53%), Gaps = 76/1001 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+D  + IYRA +A     R    G+   A+ GF N L ++LQ        +H  +
Sbjct: 2   KKLFLLDAMAMIYRAHFAFSKNPRINSKGMNTGAVLGFTNSLVEVLQKEN----PTHIGI 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+  Y +YKANR + PE +   +P +    +AF IPA+ + G+EADDII T
Sbjct: 58  AFDTAEPTFRHIEYKEYKANREEQPEDITNAIPYIYKMVEAFKIPALVLPGYEADDIIGT 117

Query: 124 YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-E 177
               A +EGF  V +++ DKD  QLV     LY         +  D+  V++K+ I   +
Sbjct: 118 IAKRAAREGFDEVYMMTIDKDYAQLVEDKIFLYKPSYMGNGIDIWDVNKVLEKFDIERVD 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++    + GD++DNIPGIPG+G KTA   L+ YG++E +L N  ++K  K++E +    
Sbjct: 178 QVIDFLGMQGDAVDNIPGIPGVGPKTAVKFLKAYGSVEGLLENTDKLKG-KQKEKVEASR 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS+KL  +  +VPI    E+L  E  +  ++ +  + LEF  L  R+         
Sbjct: 237 DQALLSKKLATINIEVPIDFSEENLKYESFDKDKVKALFEELEFRTLTRRLFK------- 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       +    A + +  R   +  +Q     D T   +S+ T     L  +  
Sbjct: 290 -----------EDAPAGATKKKTKRSPKVAANQMGLFGDGTPADDSQATAPATSLANIGN 338

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  I       + +  L+      F   T ++ A  ++ + IA +T    
Sbjct: 339 TVH------HYYAIDTPGKRTELIAHLKQQDEFCFDTETTSLVAQDAELVGIAFAT---- 388

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
               +  E  ++         +       + I+   K+ FE+E   KI  N+KYD +VL 
Sbjct: 389 ----YAGEAYYVP--------TPADQKEAQAIVDEFKEVFEDESIGKIAQNLKYDWVVLK 436

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDK 532
            YGI  +G F D ML  Y+L      H++  +A+ +L+Y   EI     K  K    +  
Sbjct: 437 NYGIEPKGKFFDTMLAHYLLQPDM-RHNMDVLAKSYLNYEPVEITSLIGKKGKKQGSMRD 495

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH--------------VYERLDKPMID 578
           +   ++ E+A E++++ LQL  +   ++  + L H              + + ++ P+I+
Sbjct: 496 VELDKITEYAGEDADITLQLKEIFDAQIKAQDLRHPAPEDGGEKVTLEKLLDEVETPLIE 555

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V++ +E  G+++D + L ++S E++K ++ LEE IY ++GE+FN++SPKQLG+ILF KL+
Sbjct: 556 VLATVETNGVRLDSESLAKLSKELAKEVVVLEEKIYKIAGEQFNIASPKQLGEILFGKLQ 615

Query: 639 F-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
             P   KTK+GQ+  T +++       N I+++IL++R L K+K+TY D+LP  +NK+T 
Sbjct: 616 LDPKAKKTKSGQY-ATGEEILVKLADKNEIVQHILDFRGLQKLKNTYVDALPELVNKKTG 674

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELR 756
            +HT Y+ A   TGRL+S  PNLQNIPI+T  G+++RRAFI    +  L++ADYSQIELR
Sbjct: 675 LIHTSYNQAVAATGRLSSTNPNLQNIPIRTAQGREVRRAFIPRSDEFVLLAADYSQIELR 734

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+A  ++   + + F+N  DIH   A++I+ V +++V   MRR AKT NF IIYGIS   
Sbjct: 735 IMAEFSQDATMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTANFGIIYGISAHG 794

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+ +L IPR EA + IK YF  FP + +Y++   N  R+  YVETI GRR +   INS  
Sbjct: 795 LSERLNIPRKEAGEIIKAYFEEFPAVKQYMDDMINKAREQEYVETILGRRRYLRNINSRN 854

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           +  R   ER AINAPIQGSAAD+ + AMI +H+ L+   L +KM+LQ+HDELVF+  ++E
Sbjct: 855 AVERGNAERNAINAPIQGSAADMIKIAMIRLHEFLKKEHLKSKMILQVHDELVFDAHKDE 914

Query: 937 ITTASQIIVHSMEKACLPKIN-LRVPLKVNIKVSNNWQEEN 976
           +      IV  M+ A       ++VP++V +     W E +
Sbjct: 915 LGILKPAIVDLMKNALSSINRTMQVPMEVEVGEGTTWLEAH 955


>gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
 gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
          Length = 1041

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1045 (32%), Positives = 536/1045 (51%), Gaps = 89/1045 (8%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             K   L L+DG + I+RAF+A P       G PVNA  GF +ML K L   R +    + 
Sbjct: 5    NKRKKLVLIDGHAIIHRAFHAVPEDLSTSSGEPVNATFGFTSMLMKALLEERPD----YI 60

Query: 62   AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            AV FD P  TFR+E Y  YKA+RP +P+ + PQ   +R   QAFGI   E  G+EADD++
Sbjct: 61   AVTFDRPTPTFRHEQYAPYKAHRPTLPDNMRPQFSRIREVVQAFGIEIYEKDGYEADDVL 120

Query: 122  ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
             T +  A+ +G    I + D D +QLV+    +    +      + D + V  ++G  P 
Sbjct: 121  GTLSVQAKAQGVDTIIYTGDMDTLQLVNEQVLVKVAKRGISEVVEYDEKEVQARYGFAPH 180

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            +++  + L GD  DNIPG+ GIG KTA  L+ EYGNLENIL +AS +K  K ++ + E  
Sbjct: 181  QLIDYKGLVGDKSDNIPGVAGIGAKTATRLIVEYGNLENILAHASELKP-KEQKLLQEGE 239

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI----------------SFLKALEF 281
            E  R S+ L  +  D P+++ LE   +   +  R++                +  + L  
Sbjct: 240  EQGRQSKFLATIVLDAPVSLDLEACRMTHVDSERILTLFRQLEFRNQVERVFALFRQLGV 299

Query: 282  T---KLINRVATTYDCDAANIEPVVLDINT------------------------------ 308
            +   +  +R+    + DA +                                        
Sbjct: 300  SVTSEGDSRLQPLEELDARSASESTAGDERERLLLAPPLGIVPILPLPQPPGREEVAPEY 359

Query: 309  --------------TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                          TE + +    E  +D  ++ S F +   +       + P    +E 
Sbjct: 360  VATAPASTGEARVATEPRALPETQEEQQDGPMQLSLFDTPEPRAEVARKLRLPGPALVET 419

Query: 355  LQKLSQYPINNDSYTKIVN-TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                 +  + + + T I+N  + +   V+ L   G  +F   T + D   +  + ++ + 
Sbjct: 420  SLFFEESNVQSPTSTMIINSEEGLDVLVKSLRDAGHFAFDTETTSEDQRKADLVGLSFAM 479

Query: 414  LDQKDDTSFKVETIFIDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
               +          +I +   T+ D    G       +L  LK  FE+    K  HN KY
Sbjct: 480  APGE--------AYYIPVGHTTTVDGQEPGTQLPLSHVLVQLKPIFEDASIGKYMHNAKY 531

Query: 472  DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSS 527
            D  V+ RYGI + G   D ML +Y+++ GR    +   A + LS       E++ S    
Sbjct: 532  DIAVMLRYGIQVEGLSFDSMLAAYLIEPGRRGLGLKEQAFQRLSILMTPITELIGSGSKI 591

Query: 528  IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            I + ++   +  ++A  ++++ L+L + L   L    LL ++ RL+ P+I V+ QME+ G
Sbjct: 592  ISMAQVPIRRAADYAGSDADMTLRLVVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYG 651

Query: 588  IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            + +D + L +   ++++ L   E+ IYD  G  FN++SPKQLG++LF +LK P+G KTKT
Sbjct: 652  VALDAEFLHEFGEQLNEQLRKAEQTIYDAVGHHFNVNSPKQLGEVLFVELKLPAGKKTKT 711

Query: 648  GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
            G +  +A  +E +  G +P I ++LE+RQLSK+KSTY D L   ++++T RV+T ++   
Sbjct: 712  G-YSVSADVIENLR-GMHPAIDSLLEYRQLSKLKSTYIDGLQTLMDRQTGRVYTSFNQTI 769

Query: 708  TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
              +GRL+S  PNLQNIP++T+LG++IRRAFI+ P+  L++ADYSQIELRILA+I     L
Sbjct: 770  ASSGRLSSSNPNLQNIPVRTELGRQIRRAFIADPSYVLLTADYSQIELRILANITNEPRL 829

Query: 768  YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
             + F    DIH + AA +F V +E+V+   RR AKT+ ++++YG S + L+    +   +
Sbjct: 830  VEAFNQGEDIHTITAASLFSVPVEEVTRDQRRLAKTVVYAVLYGQSAYGLSQVTGMRPGD 889

Query: 828  AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            AAD+IKRY   FP I  Y+E T    R+ GYV T FGR+    ++       R   ER A
Sbjct: 890  AADFIKRYHETFPNIKVYVESTLEQARRQGYVNTCFGRKRFIPDMRVLSHVERQALEREA 949

Query: 888  INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
            +N PIQGS AD+ + AM+ +  +   + + T+M+LQ+HDELVFEVP EE+  A +I+   
Sbjct: 950  VNMPIQGSNADLIKVAMLRLQHAFLQNGMKTRMILQVHDELVFEVPVEELERAKRIVKAV 1009

Query: 948  MEKACLPKINLRVPLKVNIKVSNNW 972
            ME      +  +VP+KV++K   NW
Sbjct: 1010 MEGIGALLVPQKVPIKVDMKSGKNW 1034


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/987 (34%), Positives = 535/987 (54%), Gaps = 64/987 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            ++  LFL+D  + I+R +YA     R   DG   +AI GF N L +L++  R     SH
Sbjct: 15  NQDKRLFLIDAYAMIFRGYYALIRAPRMTSDGRDTSAIFGFTNSLIELIRRER----PSH 70

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    + R   + +YKANR + PE +   +P +    +A  +P + ++G+EADD+
Sbjct: 71  LAVVFDVGQASVRTVDFAEYKANRNETPEAIQLAIPYIHRILKAMHVPILGVEGYEADDV 130

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI-P 175
           I T    AEKEG+   +++ DKD  QLV+    +Y    +      + ++ V +K+ I  
Sbjct: 131 IGTIACKAEKEGYTTFMVTPDKDFAQLVTDKIKIYKPGLKGAEFTILGVDEVKEKYEIED 190

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++   A+ GDS+DNIPG+ G+G KTA   L+EYGN+EN+L N   IK  K RE +  
Sbjct: 191 PKQVIDFLAMMGDSVDNIPGLDGVGEKTAKKFLKEYGNIENLLANTHEIKG-KLREKVEA 249

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            AE   LS+KL  +  D PI    E   LE     ++      +EF +L   +   +   
Sbjct: 250 SAERGILSKKLATIICDAPIEFHQEQYDLETPEWEKVKEVFDEIEFRRLYENLYRAFAPA 309

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +PV      + N            ++++   F++  +      ++ T +       
Sbjct: 310 TELSQPVQQKSAASAN-----------PSSMQLDLFANFEELDHATRTKSTFED------ 352

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                   N+  Y  I   K  +     L +  + +F   T T++   ++ + ++ S   
Sbjct: 353 --------NDVLYQYIDTPKAQKMLAWNLMSQKAVAFDTETTTLNEMDAELVGLSFS--- 401

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  K    +I LS   S+          + L   ++FFE E   K+ HN+K+D  +
Sbjct: 402 -----YRKGLAYYIPLSEDRSE--------AIQTLEIFREFFEKEDVSKVAHNLKFDYKI 448

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPI 530
           L +YG S++G   D M+  Y+L+     H I  +++ +L+Y    +     K  K+ +  
Sbjct: 449 LQQYGFSLKGLLFDTMIAHYLLNPD-GKHVIDYLSEIYLNYKPVALESLIGKKGKNQLTF 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++  +   +A E++++  QL+ +  P+L  E L  ++ +++ P++ V+++ME+ G+ +
Sbjct: 508 RSLTVEEQTNYAAEDADITWQLYEVFAPQLKKENLEDLFYKVEMPLLRVLAKMELEGVAL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649
           D+  L Q S ++  +L  LE  I++L+  +FN++SP+QLG+ILF KLK  P   KTKTGQ
Sbjct: 568 DEKWLAQESIDLENDLRGLEAKIFELADVEFNVNSPRQLGEILFEKLKLDPKAKKTKTGQ 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           +  T++D+ Q     + IIK ILE+R   K+KSTY D+LP  I+K   RVHT +S  +  
Sbjct: 628 Y-ATSEDVLQKLSAKHDIIKYILEYRTYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS+ PNLQNIPI+T  GQ+IR AF++   KK+ISADYSQIELR++A I+    +  
Sbjct: 687 TGRLASVNPNLQNIPIRTLRGQQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENMIL 746

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+N  DIH   AA +F + +E+V+   R  AKT+NF IIYG   F LA Q  + R+EA 
Sbjct: 747 AFQNGEDIHVSTAARLFDIPLEEVTKTQRGQAKTVNFGIIYGQGAFALAEQTGLSRTEAK 806

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I+ YF  +P + +Y+ +     ++ GYVETI  R+ H  +INS    ++   ER A+N
Sbjct: 807 QMIESYFENYPRLKKYMGEQVQKAQELGYVETILNRKRHLKDINSANFVVKAHAERNAVN 866

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAAD+ + AMI + + L +  L TKMLLQ+HDEL+FE P+EE+    ++I   ME
Sbjct: 867 APIQGSAADVIKLAMIKIDQKLSELNLKTKMLLQVHDELLFEAPQEEVEMVMKLIKTEME 926

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A       +VPL V + V +NW E +
Sbjct: 927 SA----FETKVPLLVEVGVGDNWLEAH 949


>gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
          Length = 898

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/985 (32%), Positives = 519/985 (52%), Gaps = 102/985 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
              + L+DG+S + R FYA     +     GL  NA+  F N+L K ++    +    + 
Sbjct: 2   NPKIILIDGNSILNRGFYALSGRSMLTTSTGLYTNAVFAFVNILNKYIEEENPD----YI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD  A TFR+ +Y  YKA R  +P+ L  Q+PL +   +A  I  IE +G+EADDII
Sbjct: 58  AVAFDLRAKTFRHGLYEGYKAQRKGMPDELAMQIPLAKEVLRAMNIAIIEHEGYEADDII 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIP 175
            + +  AEKE F V I++ D+D  QL+S    +     +         D + +I K+G+ 
Sbjct: 118 GSLSLKAEKENFDVIILTGDRDSFQLISDRVKVILPSTKAGKTETNVYDKQAIIDKYGVL 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ ++ L GDS DNIPG+PG+G KTA  L+  YG LE +  +   IKQ K + +++E
Sbjct: 178 PHQLIDVKGLMGDSSDNIPGVPGVGEKTALSLISAYGTLEGVYEHIDEIKQPKLKASLIE 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           Y + A LSRKL  +  ++ +   LE L  ++ N   L++  + L                
Sbjct: 238 YKDQAFLSRKLGTIVRNLELCASLEDLKRKEINRKELLNVFRKL---------------- 281

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                             +F S+  + +  ++E T      E L
Sbjct: 282 ----------------------------------EFESIISKMNLASAEVTELPPAPEEL 307

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +            T I   +D+++W+  L    + S   + D  D++ S+   +A+ T D
Sbjct: 308 KI-----------THISAAEDLKKWIAYLLNQKNISVLQLIDREDSYSSRLSGLALCTGD 356

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                       TG       I + LK+ ++NE+  KIGHNIK     
Sbjct: 357 EVFYI------------------ETGTALPENLIATELKELWQNENIHKIGHNIKEFITW 398

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
           L ++ + + G + D M+  Y++DS R+ + IAS++ K+L+ +     E+L   K +    
Sbjct: 399 LLKHDVELNGLYFDTMIAEYLIDSIRNGYPIASLSHKYLNRSVPSLDELLGKGKGAKKYS 458

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +I   ++++++  N   I  +W + +  L   +   ++  ++ P+I V++ ME  G ++D
Sbjct: 459 EIPPERLKDYSAYNVKAIFDIWPMQKKVLQENRQEELFNDIELPLITVLASMEYHGFKVD 518

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L +    +   +  LE+ IY L+GE+FN++S KQLG ILF KLK P    TKTG + 
Sbjct: 519 AAKLHEYGEVLLSRIKDLEKVIYMLAGEEFNINSTKQLGTILFEKLKLPVVKSTKTG-YS 577

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + LE++    + II  I+E+RQL+K+ +TYA+ L   IN  T ++H+ ++   T TG
Sbjct: 578 TDVEVLEELYY-KHDIIPCIIEYRQLTKLYTTYAEGLEKVINPVTGKIHSSFNQTVTATG 636

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           R++S EPNLQNIP++ ++G++IR+AFI        + ADYSQIELR+LAHI     L   
Sbjct: 637 RISSTEPNLQNIPVRHEMGREIRKAFIPSSENAVFVDADYSQIELRVLAHITGDEALINA 696

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   A+ +F V  E V+P++RR AK +NF I+YGIS + LA  L I R EA  
Sbjct: 697 FVKGEDIHTATASLVFDVAPEDVTPELRRKAKAVNFGIVYGISDYGLARDLGITRKEAKR 756

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF ++P +  Y+++     ++ GYVET+F RR +  E+ S     R+  +R A+N 
Sbjct: 757 YIDDYFAKYPKVKTYVDEIVRVGQEQGYVETLFHRRRYLPELASKNFHQRSFGKRVAMNT 816

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AM+ V+K+L++  L ++++LQ+HDELV E  E+E+ T  +++   ME+
Sbjct: 817 PIQGTAADIIKIAMVKVYKALKESGLKSRLILQVHDELVIETFEDELETVKELVKKCMEE 876

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPL V++ +  NW E 
Sbjct: 877 A----VELSVPLVVDVSIGKNWYEA 897


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/995 (34%), Positives = 523/995 (52%), Gaps = 52/995 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           MQK+  LFL+D  + ++RA+YA     R    G   NA  GF N L  L+ N +     +
Sbjct: 1   MQKK--LFLLDAFALVFRAYYALIRNPRITSKGRNTNAQFGFTNTLVDLINNQK----PT 54

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD  A+T R+  + DYKANR + PE +L  +P ++   +A  IP I I G+EADD
Sbjct: 55  HMAVCFDTHALTERHTDFADYKANRQETPEDILAAVPDIKKIIEALNIPVIAIDGYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           +I      AE  G+ V +++ DKD  QLV+    +Y    +    E +  + V +KWGI 
Sbjct: 115 VIGALARQAELAGYDVYMVTPDKDYGQLVTEKIKIYKPPYQGGSIEIMGPKEVCEKWGIK 174

Query: 176 P-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
              +++ +  L GD++DNIPGI G+G KTAA LL EY  LENIL NA  IK     E I 
Sbjct: 175 NVSQVIDILGLMGDAVDNIPGIRGVGEKTAAKLLAEYETLENILANADTIKGS-LGEKIR 233

Query: 235 EYAETARLSRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
              E A +S+KL  + TD+P      E   +++ N   L      LEF     R+     
Sbjct: 234 AGKEDAIMSKKLATIITDIPAAIFHEEDFRIKEMNKEALKEVFDLLEFRSFTKRLL---- 289

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                   +      + N      T  +      T+Q     +  + +      +++  E
Sbjct: 290 --GEGAGALPDQWRPSSNTDTGQSTTGNFKVKANTNQLDLFGNNGAVVPVTADAEQIQEE 347

Query: 354 RLQKL-----SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
                     +       +Y  + +   IQQ++  +      SF   T  +D   ++ + 
Sbjct: 348 PDALPTGPAAANIHNTPHNYILLNDEIAIQQFIDSVMGETEISFDTETTGLDPNEAELVG 407

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           ++            K E  ++      ++          ++L+  +  F N     +G N
Sbjct: 408 LSFCIT--------KGEAYYVPCPADRNE--------CIQLLNNFQPLFNNASITWVGQN 451

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKS 523
           IKYD L+L  YG  ++G   D ML  YV++    S  +  ++ K+L Y      + I K 
Sbjct: 452 IKYDLLMLKWYGFELQGNIFDTMLAHYVIEPDGKS-SMDLLSAKFLGYQPVSITELIGKK 510

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            K    +  I   +++E+A E++++ LQL  +  P +  E++  V+  ++ P++ V++ M
Sbjct: 511 GKGQGNMRDIEIEKIKEYAAEDADITLQLKNVFLPLIKKEQVEKVFAEVENPLVKVLTNM 570

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSG 642
           E  GI+ID+  LK  S  + K+ +  E+++Y+ +G KFNL+SPKQLG++LF K+K  P  
Sbjct: 571 EFEGIRIDEQFLKDYSIVLQKDAMEFEQSVYEQAGVKFNLASPKQLGEVLFDKMKLDPKA 630

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTGQ+ T    L ++    + I  +IL +R+L+K+K+TY D+LP  IN +T RVHT 
Sbjct: 631 KKTKTGQYATGEDVLAKL-ANQHKICNDILSFRELTKLKNTYVDALPQLINSKTGRVHTS 689

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHI 761
           Y+ A  +TGRL+S  PNLQNIP++T+ G++IR+AFI       L+SADYSQIELRI+A I
Sbjct: 690 YAQAVAVTGRLSSTNPNLQNIPVRTERGREIRKAFIPRDENHVLVSADYSQIELRIVAAI 749

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    + + F+   DIH   AA++F V   +V+ +MR  AK++NF IIYG   F LA  L
Sbjct: 750 SADVNMCEAFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSVNFGIIYGQGAFGLADNL 809

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I R+EA   I  Y  +FP I +Y++ T NF ++ GYVET+ GR+    +INS   ++R 
Sbjct: 810 GISRTEAKAIIDNYKKQFPNIQQYMDNTINFAKETGYVETLMGRKRWLKDINSANFTVRG 869

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER AIN+PIQG+AAD+ + AMI +  + + H   +KMLLQ+HDELVF+V +EE+    
Sbjct: 870 FAERNAINSPIQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQVHDELVFDVLKEELEKVK 929

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +I+  M+ A        VP    I    NW   +
Sbjct: 930 PVILDCMQHALALPN--DVPTNAEIGDGENWLLAH 962


>gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13]
 gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13]
          Length = 901

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/977 (34%), Positives = 522/977 (53%), Gaps = 82/977 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + L+DGSS++YRA++A P L R  +  P   I G  NML K +     +        +
Sbjct: 2   KKILLIDGSSYLYRAYHALPDL-RNQNNEPSGVIYGVLNMLKKTMAEYTSDF----VVCV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN+IY DYKANRP +PE L  Q+  ++ A  A GI  + I+G EADD+I T 
Sbjct: 57  FDAKGKTFRNDIYSDYKANRPHMPEDLAVQIEPLKKAIHALGISMLSIEGVEADDVIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A K+   V I + DKDL QLV+    L +T+  E +D E V+KK+G+PPE++V    
Sbjct: 117 AEDAVKQDMDVIISTGDKDLAQLVNDNITLVNTMTNEVLDAEGVLKKFGVPPEQIVDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD  DNIPG+  +G KTA   L E+G+L+NI+ N+ +I       ++    +     +
Sbjct: 177 LIGDKADNIPGVDKVGPKTAVKWLNEFGDLDNIVANSDQISGA-VGAHLKSAIDWLPTGK 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L+ ++ DV + +  ++ +  + +   L+   +   F+  + +     D           
Sbjct: 236 SLITIKKDVEMNVLFDNFLKSEQDKKELLKIYQHYNFSSWLKKEFEDTD----------- 284

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                         +D T+  NSE   +    E           
Sbjct: 285 ------------------------------NDLTNTSNSEVQAEFNKNE----------- 303

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y+ +    D+  W+ ++E          TD+++   ++ + ++++    K       
Sbjct: 304 --DYSIVNAESDLDYWITQIEQNNLCILDTETDSLNFMEARLVGVSLAYQAGK------- 354

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I L     QD +        +L+ +K   ENE+  K+G NIKYD  VL  Y ++ +
Sbjct: 355 -ACYIPLQH---QDMSIPQLPLNLVLNKIKSITENENITKVGQNIKYDMHVLKNYDVTFK 410

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G  ED M+MSYV+DS  S H +  +A+K+L +     + ++      +  D++S      
Sbjct: 411 GPIEDTMIMSYVIDSTES-HGMDKLAKKYLDHDCISFESVVGKGVKQLTFDQVSIDDAYL 469

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V LQL+  L  K+I + KL ++Y+ ++ P +  +  +E  G+ I + +L   +
Sbjct: 470 YASEDADVTLQLYEHLNKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQN 529

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            ++   +L+LE   Y ++ + FNLSSPKQL +ILF K+K     KT TG   T+   LE+
Sbjct: 530 QDLGLKILNLENEAYQIAEQPFNLSSPKQLREILFDKMKIIPTKKTPTGTPSTSEDVLEE 589

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           ++  D+ + K ILE R LSK+K+TY D LP  IN  T+R+HT Y+ A  +TGRLAS EPN
Sbjct: 590 LS-HDHALPKVILEHRSLSKLKNTYTDKLPKMINLNTKRIHTSYNQAVAITGRLASSEPN 648

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIKT  G+K+R AFI+    +++S DYSQIELRI+AH++K   L   F  + DIHR
Sbjct: 649 LQNIPIKTKEGRKVREAFIANTDSQIVSCDYSQIELRIMAHLSKDPGLLDAFNQNEDIHR 708

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+ IF  N   VS + RR AK INF +IYG+S F L+  L I R+ A ++I +YF ++
Sbjct: 709 STASAIFNTNDASVSSEQRRFAKVINFGLIYGMSAFGLSQTLNIDRNSAKNFIDQYFEKY 768

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PG+  Y+++ K   ++ GYVET+FGRR+    INS     R   ERAAINAP+QG+AAD+
Sbjct: 769 PGVKNYMDQGKLVAKEQGYVETVFGRRLWVPLINSSNGIQRAAAERAAINAPMQGTAADL 828

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM +V + + D+KL T M++Q+HDELV EVP  E+      I   M         L 
Sbjct: 829 IKMAMNNVQQWIGDNKLETLMIMQVHDELVLEVPNAELDIIKTEIPKIMSNVA----TLD 884

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL  ++    NW+E +
Sbjct: 885 VPLIADLGSGINWEEAH 901


>gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12]
 gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12]
          Length = 859

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/941 (34%), Positives = 495/941 (52%), Gaps = 87/941 (9%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
             NM+ KL+++          AV+FD    TFR+E YP+YKA+RP +P+ L  Q   +  
Sbjct: 1   MANMIKKLIKDYHPAE----IAVVFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQ 56

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
                G+P + I G EADD+I T    A ++G  V I + DKD+ QLV+    L +T+  
Sbjct: 57  LLAIMGLPLLIIDGVEADDVIGTLARQATEQGIPVVISTGDKDMAQLVNEHVTLINTMSN 116

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
             +D+  V +K+G+ P +++    L GD+ DNIPG+   G KTA   L EY  L+N+L +
Sbjct: 117 YTMDVAGVKEKFGVEPAQIIDYLTLVGDTSDNIPGVSKCGPKTAVKWLSEYQTLDNLLAH 176

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           +  I   K  E +        LS+KLV ++TD+ + + L  L                  
Sbjct: 177 SHEITG-KIGEYLRASIPQLPLSKKLVTIKTDIDLPLNLGELH----------------- 218

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
                          A   E ++  +   E K    E                L +QT  
Sbjct: 219 -------------PKAVAKEQLIELVRELEFKNWLKE----------------LLEQTEN 249

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
             S  T             +  ++  +Y  +     +  W+Q+LE          T ++D
Sbjct: 250 HASLTT-------------EMTLSPSTYELVTTQAQLDDWLQQLENCQVFCLDTETTSLD 296

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
              ++ + I+++  ++K      +  I  D SV           L  E+ + +K   EN 
Sbjct: 297 IMAAEIVGISLAIEEKKAA---YIPFIHTDGSV---------QLLRDEVFAAIKPILENP 344

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT--- 516
              KIG NIKYD  VL  +GI ++G   D ML SY+L+S    HD+ +++ K+L +    
Sbjct: 345 AIKKIGQNIKYDYSVLKNHGIHLQGLAYDTMLESYILNSNAGRHDMDTLSLKYLGHKTIT 404

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            ++I       +  D+I   +   +A E++++ LQL   L P ++ E L  V+  ++ P+
Sbjct: 405 FEDIAGKGAKQLRFDQIPVDKASVYAAEDADITLQLHHKLYP-MMAESLHSVFNDIEMPL 463

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           I V+++ME+ G+ ID + L+Q    + + +  LEE    L+G+ FNLSSPKQL +ILF +
Sbjct: 464 IPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEEAIQLAGKPFNLSSPKQLQEILFNE 523

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
            K P  AKT TGQ   TA+ + Q    D  +   ILE R L+K+ STY D+LP  IN  T
Sbjct: 524 QKIPVIAKTPTGQPS-TAESVLQELAFDYRLAAVILEHRGLTKLVSTYIDALPKKINAET 582

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT Y+ A   TGRL+S EPNLQNIPI+ + G+ IR AFI+PP + +++ADYSQIELR
Sbjct: 583 GRVHTSYNQAVAATGRLSSSEPNLQNIPIRNEEGRLIRTAFIAPPEQVILAADYSQIELR 642

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH+++   L   F N  DIH   AAEIF +  E+V+ + RR AK +NF +IYG+S F 
Sbjct: 643 IMAHLSQDENLLTAFANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIYGMSAFG 702

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA Q+ + R +A +YI  YF R+P + EY+ +T+    + GYVET+ GRR++  EIN+  
Sbjct: 703 LAKQIGVERQDAQNYIDTYFQRYPKVLEYMNRTRQQAHEQGYVETLCGRRLYLPEINTRN 762

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEE 935
              +   ER AINAP+QG+AADI ++AMI++ K          +M++Q+HDELVFEV  +
Sbjct: 763 LMRQKAAERTAINAPMQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFEVASQ 822

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           EI  ++  I   ME+A      L VPL V+I    NW   +
Sbjct: 823 EIEASTVKIRQLMEQAM----QLSVPLLVSIGTGPNWDAAH 859


>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 879

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/928 (34%), Positives = 518/928 (55%), Gaps = 55/928 (5%)

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +    +H AVIFD P  TFR+++ P YK +RP +PE L  Q+P +    +A GIP   + 
Sbjct: 2   RRMQPTHMAVIFDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLP 61

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADDII T    A KEG  V I + DKD+ QLV+    L D+ K+  +D + V +K+G
Sbjct: 62  GAEADDIIGTLAKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFG 121

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P +++    L GD+ D I G+PG+G KTAA LL EYG L+NI+ N  ++K  K  +NI
Sbjct: 122 VWPNQIIDYLTLMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLKG-KLSQNI 180

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            +  +  +L  +L  +  D+P+ +    L L D N   L +    LEF   +  +    +
Sbjct: 181 KDNLDNIKLDHQLASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNN 240

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            ++++ +         +     ++ E+    TI+T   +SL+ Q  ++ +          
Sbjct: 241 PNSSSYKQ--------QASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTAN-------- 284

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         Y  ++  +   Q  Q+++     +    T ++D   ++ +  +I+ 
Sbjct: 285 --------------YHTVLTQEAWDQLWQRMQNADHFAIDTETTSLDYRIAEMVGFSIAF 330

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            D KD     +   +         ++  +    +++L+ +K   ENE   KIGH++KYD 
Sbjct: 331 -DAKDAYYIPLAHNY---------ENAPQQLNREQVLAQIKPVLENEAVKKIGHHLKYDA 380

Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529
            +   +GI ++G + D ML SYVL++  + H +  +A+ +LS+   T ++I         
Sbjct: 381 HIFANHGIELKGWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKT 440

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
            ++I       +A E+++V  +L+ +L  KL    +L ++   ++ P+  ++S ME  GI
Sbjct: 441 FNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGI 500

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D   L ++S E +K +  LE    +++GE FN++SPKQ+G+ILF KL    G KT TG
Sbjct: 501 RLDHAFLDKLSVEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATG 560

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T+   LE+I   ++P+ + ILE R L+K+KSTY D L    +  T RVHT Y  A T
Sbjct: 561 QYSTSESVLEKI---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALT 617

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+  +G++IR+AFI+P  + L++ADYSQIELR++AH ++   L 
Sbjct: 618 ATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALV 677

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F++  D+HR  AAE+ G+ IE V+   RR AK +NF ++YG+S F L  QL   R E+
Sbjct: 678 HAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREES 737

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            +YIK+YF R+PGI+EY+++T+    + G+VETI GRR++  +I++    +R   ERAAI
Sbjct: 738 QNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAI 797

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAP+QGSAADI + AMI V K L   +   K+LLQ+HDELVFEV        S+ I   M
Sbjct: 798 NAPLQGSAADIIKLAMIEVDKILPKDQ--AKLLLQVHDELVFEVDSNIADELSKQIADVM 855

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +      + + VPL V +    NW + +
Sbjct: 856 QSV----LEISVPLVVEVGQGKNWDDAH 879


>gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068]
 gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068]
          Length = 966

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/980 (32%), Positives = 513/980 (52%), Gaps = 44/980 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           ++ ++++D  S IY+ F+A P ++    G PV A+ GF   +  L++N   E    +   
Sbjct: 16  DSTVYVIDAHSLIYQVFHAMPEMT-SPSGQPVGAVQGFVRDMLDLIENRSAE----YIVA 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+P+ TFR+ +Y +YK +R ++P  L  Q+P+++    A GI  + I GFEADDI+AT
Sbjct: 71  AFDHPSPTFRHTMYENYKVHRDEMPGDLQSQIPIIQQFLDALGITQLSIPGFEADDILAT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                  +G    ++++DKD  QL++    + +  K E  D   ++  WGI P+++V  Q
Sbjct: 131 LAKRVASDGGRCLVVTSDKDCRQLINDRVQMLNLRKNEIFDDVALMATWGIRPDQVVDFQ 190

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           +L GDS+DN+PG+P IG K A  LL +Y  LE +L NA ++   KR+EN+  + + A LS
Sbjct: 191 SLVGDSVDNVPGVPLIGPKIAQELLAKYETLEGVLDNADQVSGAKRKENLKNFRDQAFLS 250

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R LV L+ D+   +    + +       L+   +A  F +L+ R+       A       
Sbjct: 251 RDLVRLKNDMEFDLDWSSVRVGRYQIEMLMELCRACGFRQLLTRIEKLAKRGAPAKSSRS 310

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                        +  D+          Q      L        
Sbjct: 311 TGY--------------SSSIPAPQRDRDTPPDELYAGTEAADSQTSPSGSLGPQVAAAP 356

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
              +Y ++ +   ++  + +++  GS      T ++    ++ +  +    D +      
Sbjct: 357 WEATYRRVESLDQLRTIIDEIKAAGSLVIDTETTSVQPRWAEIVGYSFCYRDGEAWY--- 413

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
                  L +   ++          +    +   E+    K+G NIKYD +VL   GI +
Sbjct: 414 -------LPIRAPENEQALCLDATAVADLFRPVLEDPAIAKVGQNIKYDMVVLRSAGIEL 466

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKISDSQVQ 539
           RG   D M+  Y++D G  SH++  +A++ L +   E   ++ + K  I +D++  + + 
Sbjct: 467 RGAAFDTMVADYLIDPGERSHNLDELARRHLGHQNIEIESLIGTGKKQIRMDQVPLAAIT 526

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A E++ V  +L  +L P+L  + L+ ++  L+ P+++V++++E  GI++D+  L ++S
Sbjct: 527 DYAAEDALVPYRLLPILEPRLEQDGLVPLFRDLEMPLVEVLAELEHRGIKVDRARLVELS 586

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            + S  + +LE  IY ++  +FN+ S  QL  +LF  LK P   KTKTG     A+ LE 
Sbjct: 587 TDFSTKITALENEIYAINHGEFNIDSRLQLAKLLFEDLKLPILKKTKTG-PSMDAEVLED 645

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    + + K +LE+R L+K++STY DSL   I+  T RVHT        TGRL+S +PN
Sbjct: 646 L-ARLHELPKKVLEYRHLAKLRSTYVDSLQELIHPVTGRVHTSLKQDVAATGRLSSQDPN 704

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++T  G+ IR AF       KL++ADYSQIELR+LAH +    L + F +  DIH
Sbjct: 705 LQNIPVRTAEGRAIRSAFQPGIEGWKLMAADYSQIELRVLAHFSGDAALAEAFASDRDIH 764

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             VA++++ V    V+P+MRR AK INF +IYG SPF LA  L I   EAA +I  YF +
Sbjct: 765 TQVASQVYEVAPGDVTPEMRRSAKAINFGVIYGQSPFGLARSLGIENDEAAAFISAYFAQ 824

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP----KSSIRNINERAAINAPIQG 894
           +PG+ +++ +T    R+ GYV TI GRR     +  P        R + ER AIN  IQG
Sbjct: 825 YPGVDDFMRETLIGCRKQGYVTTIAGRRRPVTGVRDPHAVNDKRQRTLPERIAINTVIQG 884

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI +RAMI+VH+ L++ KL  +MLLQIHDEL+FE P EE      ++V SM  A   
Sbjct: 885 SAADIIKRAMITVHRRLKEEKLQARMLLQIHDELLFEFPPEEQGQLRDLVVESMSTAE-- 942

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              + VPLK+++K   NW +
Sbjct: 943 --KISVPLKIDVKTGLNWAD 960


>gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15]
 gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
          Length = 892

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/981 (33%), Positives = 519/981 (52%), Gaps = 94/981 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L+L+DGSS+IYRA+YA   LS    G P NA+ GF  ML K++++ R +    H
Sbjct: 1   MTGKQTLYLIDGSSYIYRAYYAIRHLS-SPKGFPTNALYGFTQMLLKVIKDRRPD----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    TFR ++YPDYKANR  +P+ L+PQ+  ++   +AF IP +E+ G+EADDI
Sbjct: 56  IAVVFDVGRTTFRTDLYPDYKANRSAMPDDLVPQIAPIKEMVRAFNIPVLELAGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T     E+ G    +++ DKDLMQ+VS    L DT+KE+   I  V +++G+ PE ++
Sbjct: 116 IGTIARECEERGMEAVVVTGDKDLMQIVSERVTLLDTMKEKASGIPDVQERFGVGPEGVI 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L GD+ DNI   PG+                        I +K   + I E+    
Sbjct: 176 DILGLAGDTSDNI---PGV----------------------PGIGEKTAIKLIQEFGSL- 209

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                      D  +    E   ++   G +L  F       +L  ++AT         +
Sbjct: 210 -----------DTLLERAGE---VKGKTGEKLREFADQ---ARLSRQLATIVRDVPMAFD 252

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 ++ +N+ +A          IK   F++L                     +  S+
Sbjct: 253 FAAFAASSPDNRRLA--------ELIKEYGFTTL-------------------MKELTSE 285

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             ++ + Y  +   ++ +  +  L+  G+ +  + T +++   ++ + I++S  D +   
Sbjct: 286 ATLSTEQYRTVATEEEFEALLADLKAAGTFAVDLETTSLNPLEAEIVGISLSYRDHE--- 342

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I +          +    + +L  L     +    K+G N+KYD  V  R+G
Sbjct: 343 -----ACYIPVGHFYL--GAPEQLPRRRVLDALTPLLIDPKIRKVGQNLKYDYQVFRRHG 395

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I + G + D M+ SY+L+  RS H + S+A + L +     +E+    K  +   ++   
Sbjct: 396 IELGGVWCDTMVASYLLNPVRSGHGLDSLAVEHLDHKMISYEEVAGKGKEQVNFAQVPVE 455

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   ++ E+S+    L  L  P++ V  +  ++  ++ P++ ++++ME+ G+++D  LL 
Sbjct: 456 KASTYSCEDSDAAWLLHRLFLPRVAVWGMERLFFDVEMPLVPILAEMELAGVKLDLPLLG 515

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ-WKTTAQ 655
           ++SA   K L  LE  I  L+ E FNL+SPKQLG++LF KLK P+G KTKT   W T  +
Sbjct: 516 ELSAGFGKQLAELEGRITGLAPEPFNLNSPKQLGEVLFEKLKLPTGKKTKTKTGWSTNVE 575

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           +LE++    + I   IL++R L+K+KSTY D+LP  +   T RVHT Y+   T TGRL+S
Sbjct: 576 ELERLAEAGHEIAALILQYRGLAKLKSTYTDALPKLVQPATGRVHTSYNQTVTNTGRLSS 635

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIP++T+ G++IRRAFI+     L+SADYSQIELR+LAH ++       F    
Sbjct: 636 SEPNLQNIPVRTEEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVFCDAFAKDE 695

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   AAE+FG+  E V+P+MRR AK INF +IYG   F LA QL I    A ++I  Y
Sbjct: 696 DIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGIATKVAREFIDNY 755

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R PG   +++       + G+V T+ GRR+   +I S   +IR   +R A+N PIQGS
Sbjct: 756 FARHPGARAFLDGCVREAEEKGHVTTLLGRRLPIPDIKSANGNIRAFAQRNAVNYPIQGS 815

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V   +    + +++++Q+HDELVFEVP+ E+    Q++   ME A    
Sbjct: 816 AADIIKEAMVKVTARMRRDVVGSRLIMQVHDELVFEVPKGEVVAMEQLVRREMEHA---- 871

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           ++LRVPLKV+I    NW E +
Sbjct: 872 VSLRVPLKVDINHGGNWSEAH 892


>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
 gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
          Length = 940

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/993 (33%), Positives = 518/993 (52%), Gaps = 70/993 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M   + L  +DGSSF+YRAFYA         G+P  A+    NML KLL+          
Sbjct: 1   MNANSCLIFIDGSSFLYRAFYAAKRGFTTKSGVPTGAVLIITNMLKKLLKQYAGYK---- 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD    +FR+++YP+YK+NRP +PE L  Q+  V    +A G+P I +   EADD+
Sbjct: 57  IAVVFDAKGKSFRSDLYPEYKSNRPPMPEDLRIQVDYVHRIVKAMGLPLIIVPKVEADDV 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           + +Y   A+  GF+  I + DKDL QLV+    L DT+ +   D + V++K+G+PP  ++
Sbjct: 117 LGSYAKKAQSLGFSSLICTGDKDLAQLVNDKVTLIDTMNDHVYDEKGVMEKYGVPPCHII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENIL 234
              AL GDS DNIPG+PG+G  TA  L+   G +E+I      I        K     + 
Sbjct: 177 DFLALKGDSSDNIPGMPGVGDVTAKTLINSLGGIEDIFSKREEIASLSFRGAKTFAAKLE 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E+ E  RLS  L  ++TDV + I +E L +   N   L++  K LEF KL          
Sbjct: 237 EHIEDVRLSYTLATIKTDVDLPIAIEDLTVPKKNKEDLLNIYKELEFAKLYAE------- 289

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +A            +      ++ ++   T       S    + SK N            
Sbjct: 290 EAQEPLDFEEKTKDSAVPTADVKAQVQSQTDFSAGVLSDHKSRGSKFN------------ 337

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                           I     +   ++K++  G  +F   T ++       + ++ S  
Sbjct: 338 ---------------LIDTIAKLDALIEKIKNKGLFAFDTETTSLHPEDCTLVGVSFSV- 381

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           ++K+     +   ++   V  ++D         ++ + L   F +    KIGHN+K+D L
Sbjct: 382 EEKEAFYLPLAHAYLGAPVQLAKD---------DVFAKLAPVFADPKIKKIGHNVKFDLL 432

Query: 475 VLHRYGIS-MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIP 529
           VL+  G+S ++G + D MLM+++LDS +S   + ++A+K+LSY      ++  S   S+ 
Sbjct: 433 VLYFAGLSAVKGVYADTMLMAHLLDSVQSC-ALDNLAEKYLSYKTIKYSDVAGSGSKSVT 491

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588
            D +       ++ E+S V L+L+ +L PK+  E K   +   L+ P + V+  ME  G 
Sbjct: 492 FDNVPVDIACAYSGEDSEVALRLFNVLLPKIKDEGKANDILFNLEMPCLSVLFDMERVGA 551

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT- 647
            +  D L + +  +   L +++++IY  +G++FN++SPKQLG++LF  L  P   K K  
Sbjct: 552 LVSADELYRQTEVLKSELQAVQKDIYAAAGQEFNIASPKQLGNVLFESLAIPYPKKVKVD 611

Query: 648 ---GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
               +  +TA+D+         I   +L +R +SK+  TY + LP  I+KRT R+HT ++
Sbjct: 612 KNGNKQYSTAEDVLTEIAPMYDIANLVLRFRSVSKLIGTYTEKLPLLISKRTGRIHTSFN 671

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A T TGRL+S +PNLQNIP +T  G+ IR+AFI+P    L+SADYSQIELR++AHIAK 
Sbjct: 672 QAGTTTGRLSSSDPNLQNIPARTHEGKLIRKAFIAPQGYTLVSADYSQIELRLIAHIAKD 731

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F+   DIH+  AAE+ G +I +V+ + R  AK  NF ++YG+    L+ Q  + 
Sbjct: 732 PNLIKAFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLMYGMGAHGLSAQTGLS 791

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
              A  YI  YF R+P I +Y++  K F  ++GYVETI GRRI +  INS         E
Sbjct: 792 FKAAKAYIDCYFTRYPKIRDYMDSIKKFAHEHGYVETILGRRIDFPGINSTNRIAVTGAE 851

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQI 943
           RAAINAP+QGSAADI + AMI++ K +      T +M+LQ+HDELVFEV  E +  A+  
Sbjct: 852 RAAINAPMQGSAADIIKIAMIAIEKWITSLPADTVRMILQVHDELVFEVKNEFLDEATAK 911

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           I   ME A    + L VPL   I +  NW + +
Sbjct: 912 IKELMENA----VTLDVPLLAGIGIGQNWGDAH 940


>gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74]
 gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74]
          Length = 1024

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1050 (30%), Positives = 539/1050 (51%), Gaps = 100/1050 (9%)

Query: 1    MQKE-NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            M K    LFL+D  + IYRA +A     R    G+  +A+ GF N + ++L   +     
Sbjct: 1    MAKPTKKLFLLDALALIYRAHFAFSKSPRISSRGINTSAVFGFMNAMIEVLTKEK----P 56

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +H  V FD    TFR+E +P YKANR   PE +   +P ++   +A  IP + + G+EAD
Sbjct: 57   THIGVAFDSAKKTFRHESFPMYKANRQSQPEDISVAMPYIKQIVEAMHIPMLILDGYEAD 116

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGI 174
            DII T    A    F V +++ DKD  QLV     +Y         EK+ +  V+++W I
Sbjct: 117  DIIGTIAKKAALADFEVYMMTPDKDYGQLVEEHIHIYKPAFMGKPAEKLGVTEVLERWQI 176

Query: 175  PP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
               E++  +  L GDS+DNIPGIPGIG KTA  L+ ++G++EN++  A  +K  K +EN+
Sbjct: 177  ERIEQVTDMLGLMGDSVDNIPGIPGIGEKTAQKLIADFGSVENLIARADELKG-KLKENV 235

Query: 234  LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            + +A+   +S++L  +  DVP+    EHL   + + PRL + L  LEF ++  R+     
Sbjct: 236  VNFAQQGLMSKELATIHLDVPVPFDEEHLRHTEYDKPRLAALLDELEFRQMKTRLLGGSY 295

Query: 294  CD-------------------------------------------------AANIEPVVL 304
             +                                                  +   P   
Sbjct: 296  DEKPLPTAFQAPGSAQMNLFDSPGGDSPAFLPFPNMGSNNPSGASDLPFDFGSETTPTAA 355

Query: 305  DINTTENKGIAIETEIDRDTTIK----TSQFSSLSDQTSKINSEQTPQKLFL-------- 352
             +   + K  A++  +   +       T   ++     ++++    P  L +        
Sbjct: 356  PVEKPKGKRTAVKVPVASGSKATPKGVTDTITADDKLGAEVSETDAPAYLDVYPDYEIDE 415

Query: 353  ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
             + ++          Y  +   +     V  L    S  F   T  +D   +  + ++ +
Sbjct: 416  NQPERRKTILSVKHDYRLVDTAELRASLVHYLSQQESLCFDSETTAIDPVEADLVGLSFA 475

Query: 413  TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                +          ++ +    ++         + I+   K  FEN    K+G N+KYD
Sbjct: 476  YRAGE--------AFYVPVPADRAE--------AQAIVDQFKPVFENPTIEKVGQNLKYD 519

Query: 473  KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSS 527
             L+L +YG+ ++G   D M+  Y+++     H++  +A  +L+Y+  EI     K  K  
Sbjct: 520  LLMLKKYGVEVQGKLFDTMIAHYLIEP-EMRHNMDMMAMTYLNYSPVEIEALIGKKGKGQ 578

Query: 528  IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            + +  +   +V ++A E++++ LQL     P+L  + L  ++++++ P++ V++ +E+ G
Sbjct: 579  LTMRDVDIQKVVDYAGEDADITLQLKHAFAPRLEKDNLHKLFDQVEMPLVQVLTDLELEG 638

Query: 588  IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            I+ID + L ++SA +  ++  +++ I++++GE FN+ SPKQLG++LF KLK    AK   
Sbjct: 639  IKIDTNALSELSATLEVDMRQVQQEIFEIAGESFNIGSPKQLGEVLFDKLKLDKNAKKTK 698

Query: 648  GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
                 T +++      ++ I + IL++R+L K+K+TY D+LP  I+KRT R+HT ++ A 
Sbjct: 699  TGQYATGEEILSKLEAEHEIARKILDYRELIKLKNTYVDALPLLISKRTGRIHTSFNQAV 758

Query: 708  TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
              TGRL+S  PNLQNIPI+T  GQ+IR+AF+   P   ++SADYSQIELRI+A  +    
Sbjct: 759  AATGRLSSTNPNLQNIPIRTPRGQEIRKAFVPRGPEFVIMSADYSQIELRIMAAFSGDQT 818

Query: 767  LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + + F N +DIH   A+++F V +++V+  MRR AKTINF IIYGIS F LA +L+IPR 
Sbjct: 819  MLEAFNNGVDIHTQTASKVFHVGLDEVTSDMRRKAKTINFGIIYGISSFGLAQRLKIPRK 878

Query: 827  EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            EA   I+ YF  FP + +YI++     R  GY ETI GRR +  +INS   + R   ER 
Sbjct: 879  EAGQIIEEYFAGFPAVKDYIDQCIEKARGFGYAETILGRRRYLRDINSRNQTDRMFAERN 938

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            A+NAPIQGSAAD+ + AMI +H+ ++  +L +KM+L +HDELVF+   +EI      +  
Sbjct: 939  AVNAPIQGSAADMLKIAMIQIHEFMQAERLKSKMILTVHDELVFDAHRDEIDLLRVRVDE 998

Query: 947  SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M+ A    I + V ++  I    NW   +
Sbjct: 999  IMKNA----IPMGVKMETGIGTGENWLLAH 1024


>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
 gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
          Length = 874

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/976 (34%), Positives = 525/976 (53%), Gaps = 112/976 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + ++DGSS ++RAFYA P L+    GL  NA+ GF  ML KLL +++ +      AV F
Sbjct: 4   KMVIIDGSSLMHRAFYALPPLTTAA-GLYTNAVYGFTTMLVKLLSDNKPDL----IAVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++Y +YK++R   P  L  Q  LV     AFGIP +E  G+EADDII T  
Sbjct: 59  DKGRETFRSQVYAEYKSHRQATPGELSEQFALVHEVLAAFGIPVLEKPGYEADDIIGTLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A ++ + V I++ D+D +QL+ P T +  T K     E +DI  + +K+G+ PE++  
Sbjct: 119 AQASRQDYDVFIVTGDRDALQLIGPRTKVMLTRKGISETELVDINVLQEKYGLLPEQITD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD+ DNIPG+PGIG KTA  LL+E+G++EN+L N  ++  KK +E++   AE A 
Sbjct: 179 LKGLMGDASDNIPGVPGIGEKTAGKLLREFGSVENLLANIDKVSGKKLQESLRANAELAL 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+KL  +  DVP+   LE L     +  R+    + LEF  L+ ++             
Sbjct: 239 LSKKLATIVCDVPLDCSLEALKA-APDVDRVREVFQRLEFKSLLAKLP------------ 285

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                        F S +   ++   E +P K            
Sbjct: 286 ---------------------------ELFDSKALPQNETTLELSPAKA----------- 307

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    + +  ++++ V +++ +GS  F  +T          I +AI   D+     
Sbjct: 308 ---------VTSFTELREIVARVKRLGSMVFFPLTSGKIP-AVTLIGLAIWAGDE----- 352

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++I  +V+  +                     +E   K+ +N K         G 
Sbjct: 353 ----AVYIPHNVNGWELVWD--------------LLADETIPKVTYNAKDVCNACKAKGT 394

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            +RG   DI L +Y+L+   + + +  +A + L     ++ K                 +
Sbjct: 395 ELRGLCFDIQLAAYLLEPTAAKYPLTELACQHLGLAVGDMDK-----------EHLGTPD 443

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A   + V+ +L+ +L+ KL+   L  +YE ++ P++ V+S+MEI GI++D   L  ++ 
Sbjct: 444 YAGWAAEVVQRLYPVLKEKLVAAGLAELYEEIELPLVPVLSEMEIAGIRVDLTQLDALAQ 503

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EI+  + +L   IY L+G++FN++S +QLG ILF  LK P   KTKTG + T A+ LE++
Sbjct: 504 EITDRIETLLTEIYQLAGQEFNVNSTRQLGHILFEVLKLPVIKKTKTG-YSTDAEVLEKL 562

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
             G +P+I  +LE+R L+K+KSTY D L + I   T R+HT ++   T TGRL+S EPNL
Sbjct: 563 -AGQHPLIDCLLEYRLLTKLKSTYLDGLRDLIRADTGRIHTHFNQTVTATGRLSSSEPNL 621

Query: 721 QNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIPI+T++G++IR  F+  P    ++SADYSQIELR+LAH++    L   F ++ DIH 
Sbjct: 622 QNIPIRTEIGRRIRELFVPGPGYDWIMSADYSQIELRVLAHMSGDDNLIDAFRHNQDIHT 681

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+FGV + +V+ QMR  AK +NF I+YGIS F L+  + + R EA  YI  YF ++
Sbjct: 682 HTAAEVFGVPMAEVTAQMRARAKAVNFGIVYGISDFGLSRDIGVSRKEAGQYIDSYFAKY 741

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+  YI+   N  RQ GYV T+FGRR    +INS   + R   ER A+N PIQG+AADI
Sbjct: 742 RGVKNYIDNVINLARQQGYVTTLFGRRRFLPDINSGNFNQRAFAERTAMNTPIQGTAADI 801

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            ++AMI+V++ L D +L +++LLQ+HDELV EV E E    +Q++  +ME A    + L 
Sbjct: 802 IKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVAEAERVLVAQLVKQAMEDA----VTLA 857

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL  ++K   NW + 
Sbjct: 858 VPLVADVKTGANWAQA 873


>gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 942

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/992 (32%), Positives = 517/992 (52%), Gaps = 72/992 (7%)

Query: 5   NHLFLVDGS------------SFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNS 52
             L ++DG             S           L+    GLP  AI GF  ML+KLLQ+ 
Sbjct: 3   GRLLIIDGHALAFRAYFAFAAS----------NLTNSKTGLPSGAIFGFWRMLFKLLQDE 52

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
                 +H A  FD      RN++Y +YKA+R  +PE L PQ+  +    QA   P  +I
Sbjct: 53  H----VTHIAFTFDPGTRLERNDLYEEYKAHRKPMPEDLKPQIQKIYEMLQALEFPMYKI 108

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168
            G EADDII +      K+   + I+S+DKDL Q++     +    +     EKID + V
Sbjct: 109 NGIEADDIIGSLCKKFGKDFEEIVILSSDKDLYQVLDKNIHMLRGKRGVSEFEKIDPKWV 168

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
               GI  E++    AL GD+ DNIPG+ GIG K AA L+QE+G+LE I     ++K K 
Sbjct: 169 KTNIGITKEQVTDYMALLGDASDNIPGVKGIGEKGAAKLIQEFGDLETIYKKIDKVKNKS 228

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             + ++   E A LSRKL  + T++ + I    L L +   P+ + + K   +  L   +
Sbjct: 229 LIDKLIADKENAFLSRKLATIVTNLKLDIKKSDLKLPNYYDPKKVQYFKDEGYNVLHRDL 288

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
           A           P+V D +  E                  S+ S  + +  K ++ +   
Sbjct: 289 AKQAGI------PIVSDGDAKE-----------------ESETSKKTTKGKKESNTEASA 325

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
               +     +   +   SY +I +  ++++ V KL +    S    T + D   ++ + 
Sbjct: 326 DGSKKGKTDAATSVVAKKSYKRIQSIDELKKIVSKLNSKKPISIDTETTSQDPMMAELLG 385

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           I+ S               +     H+    +      +E L  LK   E+ ++ KIG N
Sbjct: 386 ISFSEEPG---------VAYYIAFSHSESIYSHLLPSAEESLKILKPMLEDSNWKKIGQN 436

Query: 469 IKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSR 524
           IKYD LVL  YGI ++G   D ML SY+L+ G   H++  +A  +L+Y     +E++ + 
Sbjct: 437 IKYDLLVLKNYGIELKGIYFDTMLASYLLNPGERRHNMDDMAVDYLNYKTITYEELVGTG 496

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K    +  I   +V E+A E++++ LQL  +L PK+       ++  ++ P++  ++ ME
Sbjct: 497 KKKQNLYDIDPDKVSEYACEDADITLQLHNVLSPKMDENIHKKLFYEMEMPVLLTLADME 556

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D+   + +S      +   E+NI+  +G +FN++S K+L  +LF  L+ P+  K
Sbjct: 557 FEGIAVDKSYFESLSGTFDTKIKEHEKNIHFYAGRQFNVNSTKELQTVLFEDLRLPAEKK 616

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           T+TG   +T   + +   G +PII ++L  R+ SK+KSTY D+LP  +N +T+R+HT Y+
Sbjct: 617 TQTGY--STDHSVLESLQGTHPIIDDLLSIRKFSKLKSTYTDTLPLLVNPKTKRIHTSYN 674

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
                TGRL+S  PNLQNIPIK + G+ +R+ FI+    +++S DYSQIELRI+AH +  
Sbjct: 675 QTIAATGRLSSTNPNLQNIPIKDEEGRLLRKGFIAKKGYEILSLDYSQIELRIMAHFSND 734

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             +   + +  DIH+  AA IFGV  ++V+P MR  AK +NFS+IYG++ F L+  LRI 
Sbjct: 735 PNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIYGVTSFGLSNNLRIS 794

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA ++I++YF  + G+  Y+E+   F +QNGYVET+ GRR +  +I+S    +    +
Sbjct: 795 RKEAKEFIEKYFAAYKGVATYMEEIVEFCKQNGYVETLLGRRRYLPDIHSSHKMVSEGAK 854

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQG++AD+ + AMI +H+ ++     +K+LLQ+HDELVFEV  +E     Q+ 
Sbjct: 855 RVAINSPIQGTSADMIKIAMIQIHEKIKKESFRSKLLLQVHDELVFEVDPKEKKEFFQMA 914

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              ME A      L+VP+ V  K   NW E +
Sbjct: 915 KEEMESAM----KLKVPIVVQGKFGGNWDEAH 942


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/985 (32%), Positives = 521/985 (52%), Gaps = 41/985 (4%)

Query: 5   NHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFLVD  + I++ +YA      R   G+  + + GF   L  + +  R +       V
Sbjct: 2   KKLFLVDAYALIFKYYYAFLGRPMRNRAGMNTSVVFGFVKFLRDIQKRERPDL----LGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR E++P+YKANR + PE +L  +P V+   +A  IP +E++G+EADD+I T
Sbjct: 58  AFDPKGGSFRREVFPEYKANRAETPEDILLSVPYVKRVLEAMCIPILEVEGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE-K 178
            +    + G+ V +++ DKD  QLV     +Y         E +D + + +K+GI     
Sbjct: 118 LSQKGVEAGYEVFMVTPDKDYGQLVRDNCKIYKQKGADGSIEIVDRDSIREKYGIDDPVL 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  + AL GD+ DNIPG+PGIG K+A  L+QE+G +ENIL N S+IK  K+ E I  + +
Sbjct: 178 VRDILALWGDASDNIPGVPGIGEKSACKLVQEWGTVENILDNVSKIKG-KQGEKIAAWGD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             RL++ L  +  DVPI    E L + D +   L +    L+F   +N +      +A  
Sbjct: 237 KLRLAKHLTTICLDVPIPFRPEDLTVCDPHIDELKAVFAELDFKAFMNDLTNLAPPEALP 296

Query: 299 IEP-VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             P         E                + + F     +          +        +
Sbjct: 297 EGPRQEAQTQLAEMARAKSAAAKRAALVGQGNLFGDPVVEMPAATDVPAAELQAEAEAMQ 356

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  + +   ++  V ++       F   T   D F+ + + ++++     
Sbjct: 357 FKTAQTTPHDYRLVEDAAQLRGVVDEVGKYEEFCFDTETTGFDIFNDRIVGMSLAV---- 412

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  E  +I            K   T E    ++  FEN+   KIG NIK+D +VL 
Sbjct: 413 ----NPFEAWYIPF----------KEENTAEYTEIVRPLFENDRIAKIGQNIKFDLMVLR 458

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKI 533
           + G+ +RG   D M++ Y+LD   S H++ ++A+K+L+Y   E   ++      + +D +
Sbjct: 459 QLGLEIRGRKYDTMILHYLLDP-ESRHNMNALAEKYLNYKPIEIETLIGKGSKQLTMDLV 517

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  +V+E+A E+++V L+L   L P++    L H+Y  +++PMI V++ +E+ G++ID +
Sbjct: 518 NVERVKEYAAEDADVTLRLKHALYPQIEELGLQHLYFEIEEPMIAVLADIEMAGVRIDSE 577

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            L   S E+S+ L  LE  I + +GE + N++S +QLG++LF K++     K    +   
Sbjct: 578 ALAVYSVELSRRLAELEAAICEEAGESQLNINSARQLGEVLFGKMRIAEKPKMTKTKQFC 637

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +D  Q     + I+  ILE+R + K+ STY ++LP  +N+RT R+HT ++ A T TGR
Sbjct: 638 TDEDYLQSFAHKHRIVDLILEYRGVKKLLSTYVEALPQLVNRRTGRIHTSFNQAVTATGR 697

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIP++ ++G++IRRAFI       L+SADYSQ+ELR++AH++    L   F
Sbjct: 698 LSSTNPNLQNIPVREEMGRRIRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLIAAF 757

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH   AA++F   +++V+ + RR AKT NF IIYGIS F L+ +L IPR EA + 
Sbjct: 758 AHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQRLEIPRKEAKEI 817

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  +P + EY++      ++ G+V TIFGRR + ++I S  +  R + ER A+NAP
Sbjct: 818 IDGYFASYPKVQEYMDNVVAKAKEEGFVSTIFGRRRYLNDIASHNAIARGLAERNAVNAP 877

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI+VH+      + +K++LQ+HDELV ++   E      I+  +ME A
Sbjct: 878 IQGSAADIMKIAMINVHRRFAAEGIRSKVILQVHDELVVDMLRSEQERVVAIVTEAMESA 937

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L+V L V+  V  NW E +
Sbjct: 938 AA----LKVRLVVDYGVGGNWLEAH 958


>gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
 gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
          Length = 924

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/986 (39%), Positives = 562/986 (56%), Gaps = 72/986 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +  HL+LVDGS +I+RA+++ P ++R  DG PVNA+ GF  ML KLL     +  A H
Sbjct: 1   MTEPKHLYLVDGSGYIFRAYHSLPPMTRT-DGTPVNAVYGFTAMLMKLLA----DMDADH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD   V+FRNEIYP YKA RP  PE L+PQ PL+R A +AF +P IE  GFEADD+
Sbjct: 56  LAVIFDKARVSFRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAFNVPCIERDGFEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IATY   A  EG  VT++S+DKDLMQLV     L+D +K   I    V +K+G+ P+K++
Sbjct: 116 IATYAKRARAEGAIVTVVSSDKDLMQLVGEGVALFDPMKNRAIGPAEVFEKFGVAPDKVI 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QAL GD++DN+PG+PGIG KTAA L+ EYG+LE +L  A+ IKQ KRR+++L++AE A
Sbjct: 176 DVQALAGDAVDNVPGVPGIGVKTAAQLIGEYGDLETLLARAAEIKQPKRRQSLLDHAEAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+S +LV LR DV ++               L  F                     A  E
Sbjct: 236 RISLQLVRLRDDVEVS-------------ETLADF---------------------ATAE 261

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P               + E+      +    S L+  T+  +++                
Sbjct: 262 P---------------DAEVLAGFLAENGFRSLLARVTAVAHAKA--------GTTPQPA 298

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               +D Y  +    ++  W+ K    G  +    TD++ A  +  + ++++    +   
Sbjct: 299 AAPADDDYVLVNTLAELGVWIAKARAAGLVAIDTETDSLKARRATLVGVSLAITPGRACY 358

Query: 421 SFKVETI--FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 +     L    +             L+ L     +   LK+GHN+K+D  VL  
Sbjct: 359 IPFAHGLRKAEGLDFDGAAPPVANIEDKAAALALLGDLLRDPGVLKVGHNLKFDLHVLAN 418

Query: 479 YGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
            G+  +   +D M++SYVLD     H +  +A   L     T +E+    K  I  D++ 
Sbjct: 419 AGLSDVAPVDDTMVLSYVLDGTLHGHGMDELAGLHLGRRTITFEEVCGKGKGQITFDQVP 478

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E+++V L+L+LLLR +L+ E ++ V+E LD+PM+ +++ ME  G+++D   
Sbjct: 479 LDKAVAYAAEDADVTLRLYLLLRDRLLKEHMVRVHETLDRPMVRILTDMEAAGVRVDALR 538

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTT 653
           LK +S + +K +  LE+ I+ L+G  FN++SPKQLG++LF ++    G K+ KTG W T 
Sbjct: 539 LKALSGDFAKRMGDLEDQIHALAGHAFNVASPKQLGEVLFEEMSLTGGKKSRKTGAWSTD 598

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           AQ L+Q+    + +   +L+WRQ +K+K TY D+L   I++RT RVHT Y L  T TGRL
Sbjct: 599 AQVLDQLAAEGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRVHTTYGLTVTATGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIP++++ G+KIR AFI+ P   LISADYSQIELR++AH+A IT L Q F  
Sbjct: 659 SSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYSQIELRLVAHVAGITALRQAFAE 718

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH + A+++FGV +E + P +RR AK INF IIYGIS   LA QL + R EAA +I 
Sbjct: 719 GKDIHAITASQVFGVPVEGMDPMVRRQAKAINFGIIYGISAHGLAQQLGVGRPEAAAFIT 778

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RFP I  Y+E  K   R  G+V T FGRRI    I     + R   ER AINAPIQ
Sbjct: 779 AYFARFPEIRSYMETVKEEARTVGWVATPFGRRIPIPGIQDKNPAARAFAERQAINAPIQ 838

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G AADI +RAMI++  +LE   LAT+MLLQ+HDEL+FE PE E  TA+ ++   ME A  
Sbjct: 839 GGAADIIKRAMIALPPALEQAGLATRMLLQVHDELIFEAPEAEAETAAALVKRVMETAVT 898

Query: 954 ---PKINLRVPLKVNIKVSNNWQEEN 976
               +    VPL+V+  ++ +W E +
Sbjct: 899 LTDDQGERTVPLEVDTGIAASWAEAH 924


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/976 (34%), Positives = 510/976 (52%), Gaps = 107/976 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L ++DG+S ++RAF+A PLLS    G+  NA  GF NML K+LQ           AV 
Sbjct: 4   DTLLVIDGNSLVHRAFHALPLLSNSK-GVITNAAYGFTNMLLKVLQEVEPGF----VAVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   VTFRNE Y DYK +R   P+ L PQ  +VR   +A  IP  E+ G+EADD+I T 
Sbjct: 59  FDKGKVTFRNEAYADYKGHRQATPDELRPQFVIVRDILKAMRIPYFELAGYEADDLIGTI 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T   E  G  V I++ D+D +QLVSP T +  T K     E  D   V  K+G+ P ++V
Sbjct: 119 TTRGEATGLNVIILTGDRDALQLVSPKTKVMLTRKGITEIELFDEGLVWDKFGVTPNQIV 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GD+ DNIPG+PGIG KTAA L++E+G++E I+ N   +   ++++ +    E A
Sbjct: 179 DLKALQGDASDNIPGVPGIGAKTAAALIKEHGSVEQIIKNIDNLTP-RQQKLLRGMEEQA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS++L  + TDVP+ + L     +  +  +L+     L                     
Sbjct: 238 MLSKRLATIVTDVPMDLDLAACSWQGPDNQKLLEIFTEL--------------------- 276

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                        +F +L  Q  +    +  Q    +  + +  
Sbjct: 277 -----------------------------EFKTLIKQLLEGTKSKKSQDGAKKTEKYVPP 307

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y    N  D  + +      G  +  +     D        I+          
Sbjct: 308 VNTYQVGYKVTTNQDDFDELLVNATRAGKVALYLEGTRHD-------GIS---------- 350

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                 IF+ +          ++T     L+ L+   EN    K  H+ K    +LH +G
Sbjct: 351 -----RIFVAVPEQDIYLLPLQDTDPYPALTVLQALCENSEIKKYFHDAKSALWMLHHHG 405

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I ++    D M+ +Y+L+   S +D+  +A + L              +P++       +
Sbjct: 406 IELKSLAFDTMVAAYLLNPTASGYDLIDLALEHLGIV-----------LPVNG------E 448

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
                 ++ IL+L   L  KL +++   +Y  ++ P++ V++ ME+ G+ +D+  LK++S
Sbjct: 449 VSLAAKADAILKLAGELVKKLHLQEEDRLYFEVELPLVQVLADMEMAGVTVDKQGLKEMS 508

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           AE+   + SL   I+ L+GE FN++SPKQLG ILF KLK P   KTKTG + T A+ LE+
Sbjct: 509 AELHDMIESLAHRIHTLAGEDFNINSPKQLGHILFEKLKLPVYKKTKTG-YSTDAEVLEK 567

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ I+  ILE+RQL+K+KSTY D L   ++ +T R+H+ +    T TGRL+S EPN
Sbjct: 568 L-AEEHEIVALILEYRQLAKLKSTYTDGLAALVDPQTGRLHSTFHQTVTATGRLSSAEPN 626

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G++IR+ F+       +++ADYSQIELR+LAH+++     + F    DIH
Sbjct: 627 LQNIPIRLESGRRIRKVFVPRQKGNLILTADYSQIELRVLAHMSQDPSFLEAFRQGQDIH 686

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AAE+FGV +E+V+P MR  AK +NF I+YGIS F LA  L++ R EA  YI  YF R
Sbjct: 687 TRTAAEVFGVPMEEVTPDMRSRAKAVNFGIVYGISDFGLARDLKVSRREAKSYIDNYFAR 746

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            PG+ +YI++     +  GYV T+  RR +  ++ SP  + R+  ERAA+N PIQGSAAD
Sbjct: 747 CPGVKDYIDRVIKEAKHTGYVTTLLNRRRYLPDLFSPNYNARSFGERAAMNTPIQGSAAD 806

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ V + L +  L  K++LQ+HDEL+F+VPE E+     ++   ME A    + L
Sbjct: 807 IIKLAMVRVARELRERNLQAKLVLQVHDELIFDVPESEVNELVDLVRDCMENA----LPL 862

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V++K+  NW E
Sbjct: 863 DVPLVVDVKLGPNWYE 878


>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
 gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
          Length = 934

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/982 (32%), Positives = 509/982 (51%), Gaps = 80/982 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L R  +G P  A+ G   ML +L +         + A +
Sbjct: 23  PTLLLVDGSSYLYRAFHAMPDL-RGPEGQPTGALYGMVAMLRRLREQYPVAKGYRYAACV 81

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN +Y  YKA RP +P  L+ Q+  +  A +  G P +E+ G EADD+I T 
Sbjct: 82  FDAKGPTFRNAMYDQYKAQRPPMPPDLVAQIEPIHQAVRLMGWPLLEVPGVEADDVIGTL 141

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  +G    + + DKD+ QLV+    L +T+  E +D   V +K+G+PP+++V    
Sbjct: 142 AVRAHAQGIRTLVSTGDKDMAQLVNDHITLVNTMSNEVLDPAGVQQKFGVPPDRIVDYLT 201

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+  +G KTA   L EYG+L+ ++  A  +      +N+    +    +R
Sbjct: 202 LVGDAVDNVPGVDKVGPKTAVKWLTEYGSLDALIEQAETVSGA-AGKNLRAALDWLPTAR 260

Query: 245 KLVMLRTDVPIT-----IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           KLV + TD  +           L     +   L+ F  +    +    +      + A  
Sbjct: 261 KLVTIHTDCDLDGYAKAFDP-DLRPAPEDAQALLPFFTSNGMRRFSAEMKAQTVSEQAAR 319

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +  +LD      K                                               
Sbjct: 320 QVSLLDGAPAAEKSA--------------------------------------------- 334

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                  +Y  +++      W+ +++     +    TD++D   ++ + I++S    +  
Sbjct: 335 -----PGTYETVLDCDRFDAWLTRIDAAELTAIDTETDSLDPMRARLVGISLSVAPGE-- 387

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ L+   +     +     E+L  L+ + EN    K+G N KYD+ V    
Sbjct: 388 ------AAYLPLAH--AYPGAPEQLPMAEVLERLRPWLENADKPKLGQNAKYDRHVFANA 439

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS----YTRKEILKSRKSSIPIDKIS 534
           G+++RG+  D +L SYV+++ +  H + S+  + L      + +++      +I  D+++
Sbjct: 440 GVTIRGYAHDTLLESYVIEAHK-PHSLDSLVSRHLGRDDTLSYEQVCGKGTKAITFDQVA 498

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                 ++ E++++ LQ+   L P++  +  L     L+  + +V+ ++E TG+ +D DL
Sbjct: 499 LDVATRYSGEDADLTLQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDL 558

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+  S E+   + +LE   ++L+G  FNL SPKQ+G+ILF +L+ P   KT +G   T  
Sbjct: 559 LRAQSGELGAKMQTLEAQAFELAGGAFNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDE 618

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE++   D P+ + IL+ R LSK+KSTY + LP  IN  T RVHT Y+ A  +TGRLA
Sbjct: 619 EVLEKL-AEDYPLPRVILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVAVTGRLA 677

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++T  G++IR AFI+P    + S+DYSQIELRI+AH+++   L   F   
Sbjct: 678 SNDPNLQNIPVRTAEGRRIREAFIAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAG 737

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AAEIFGV   +VS   RR AK INF +IYG+S F LA  L + RS A  YI R
Sbjct: 738 EDIHRATAAEIFGVTPLEVSSDQRRMAKVINFGLIYGMSAFGLARNLGLERSAAQLYIDR 797

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+  Y+E+T+    + GYVET+FGRR+   +I++     R   ERAAINAP+QG
Sbjct: 798 YFARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDIHAS-GPRRAAAERAAINAPMQG 856

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + AMI+V  +L   KL +++++Q+HDELV EVPEEE     + I   M      
Sbjct: 857 TAADLIKMAMIAVDAALMREKLRSRVVMQVHDELVLEVPEEETHWVREHIPRLMAGVA-- 914

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL   + +  NW+  +
Sbjct: 915 --QLDVPLLAEMGLGANWELAH 934


>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR]
 gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
          Length = 886

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/980 (34%), Positives = 521/980 (53%), Gaps = 106/980 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +    ++DG+S +YRAFYA PLL     G+  NA+ GF  ML K+L   +     + 
Sbjct: 1   MT-QGKFIIIDGNSLVYRAFYALPLLKTT-TGVYTNAVYGFTTMLMKVLNEEK----PAC 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+ FD    TFRNE + DYK +R   P+ L PQ PLV+   +AF IP  EI+G+EADDI
Sbjct: 55  LAIAFDKGKTTFRNEHFEDYKGHRKATPDELKPQFPLVKEIVRAFRIPVYEIEGYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE+ G+   I++ D+D +QLVSP T +  T K     E  D   V +++G+ P
Sbjct: 115 IGTVSLKAEEMGYETVIVTGDRDALQLVSPKTRVMLTKKGISEMELYDENKVAERYGLKP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GD+ DNIPG+PGIG KTAA L++EYG++E +L     +   K RE + +Y
Sbjct: 175 AQIIDMKGLMGDTSDNIPGVPGIGEKTAAKLVREYGSVEELLAQRGTVAG-KLREKLEQY 233

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           AE A LS+KL  +   VPI I L   ++E+ +  +L+   ++LEF  L          + 
Sbjct: 234 AEQALLSKKLATIIRHVPIEIDLRECVVEEPDYAKLLELGRSLEFKALTK-----LAQEK 288

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           A  +P  L     E K + I  E                                     
Sbjct: 289 APEQPEKLSEPVDEAKQLQINGE------------------------------------- 311

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y +    + +    + +E     +  + T   D + +  + +A S    
Sbjct: 312 -----------YRQYNFDEALASITRFVEQKKDLALVLQTSNQDPWSAGILGLAWSAEPG 360

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         L+    Q +     +   +L + K +          H+ K   ++L
Sbjct: 361 SGGY----------LAGEELQPADKLTRILDTVL-WTKGWV-------CFHDAKRTDILL 402

Query: 477 HRYG-ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
            R G   +R   D ML +Y+LD   S+ D+A+++ K+L                  ++S 
Sbjct: 403 RRLGNKPVRAGFDTMLAAYLLDPSVSNLDLAALSIKYLG----------------QELSP 446

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +        +++IL+L  +L  KL    +L +Y  ++ P++ +++ ME +G+++D++ L
Sbjct: 447 GEDYRSFCAQADIILRLVPVLHEKLAELNMLDLYFDVEMPLLHILADMEFSGVKLDKEYL 506

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +S ++S  +  +  +IY L+GE+FN++S +QLG ILF KL  P   KTKTG   +T  
Sbjct: 507 EAMSVDLSTEIDRITGDIYRLAGEEFNINSTRQLGTILFEKLGLPVIKKTKTGY--STDV 564

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           ++ +     + I+  +L +RQL K+KSTY D L   IN  T +VHT ++   T TGRL+S
Sbjct: 565 EVLETLAERHEIVARVLHYRQLVKLKSTYVDGLIPLINPVTGKVHTTFNQTVTATGRLSS 624

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPI+ + G++IR+AF+   P   ++SADYSQIELRILAH++      Q F N 
Sbjct: 625 TEPNLQNIPIRMEEGRRIRKAFVPSEPGWIILSADYSQIELRILAHLSGDERFVQAFRND 684

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AAE+FGV++E+V+ +MR  AK +NF I+YGIS F LA  + + R EA  YI+ 
Sbjct: 685 EDIHTRTAAEVFGVSLEEVTGEMRSRAKAVNFGIVYGISDFGLAKNISVSRKEARQYIEN 744

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+ GI +Y+E+T    R+ GYV T+  RR +  +I SP  +IR+  ER A+N PIQG
Sbjct: 745 YFARYAGIKKYLEETVRLAREQGYVTTLLNRRRYLPDILSPNRNIRSFGERTAMNTPIQG 804

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+ V   L+   L  +MLLQ+HDEL+FE P EE+   + I+   ME     
Sbjct: 805 SAADIIKLAMVRVADCLKKEGLKARMLLQVHDELIFEAPPEELPKVTGIVRECMEN---- 860

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            + L VPLKV++K   NW +
Sbjct: 861 TVKLTVPLKVDMKKGFNWYD 880


>gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
 gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
          Length = 938

 Score =  853 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/984 (32%), Positives = 527/984 (53%), Gaps = 71/984 (7%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+DG +  YRAF+A     +      G P   + GF ++L +LL+  + E    + AV
Sbjct: 5   LYLIDGHALAYRAFFALTTSGMRLSTASGEPTAGVYGFASVLLRLLEQDKPE----YLAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR++IY +YKA R K+P+ L  Q+  +R     FG P +E+ G+EADDIIA+
Sbjct: 61  AFD-GGYSFRDQIYSEYKATRAKMPDDLRMQMERIRELVDVFGFPRLELNGYEADDIIAS 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEK 178
             + A K+GF V II+ D+DL+QLV     +     +     + +  E V    GI P++
Sbjct: 120 IAHQAVKQGFGVKIITGDRDLLQLVDERIAVNLAGSKLSEARDFVRQEDVQAYLGIRPDQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +V  +AL GD  DNIPG+ GIG KTA  LL++Y +LE+I  +   +   K R+ + E  E
Sbjct: 180 VVDFKALAGDPSDNIPGVRGIGEKTALALLKDYAHLEDIYAHLDDLPA-KVRQKLEEGRE 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +SR+L  ++ D+ IT+ L     +     +++ F + +EF  LI R+   +   AA+
Sbjct: 239 MAFMSRELATIKRDLHITLELAQARTDAIPVEKVLDFFRRMEFRSLITRMEKIFGISAAS 298

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             +  +         Q S   ++  ++                 
Sbjct: 299 APQ---------------QVPLIPPEPTSIGQLSLFGEEIVRVGL--------------- 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
              P ++ +   +   + + +   KL      +    T + D  +   + I+++      
Sbjct: 329 --PPQHDLNTVIVNTPETLAELCAKLAQAEWIALDTETTSTDPLNGALVGISLAVEPGTG 386

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ +   T +         + I   L  F  +    K+G N+KYD L L  
Sbjct: 387 --------YYLPVGHLTGEP----QLPLESIRDALAPFLGDPRKPKVGQNLKYDLLALRL 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
            G+  +G   D +L  +++D    +  +  +A+++L       +E++ + K+   + ++S
Sbjct: 435 AGMEAQGLAFDTLLAEWLVDPASRALGLKEMAERYLGVQMTRIEELIGTGKNQRTMAQVS 494

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            +QV  +A  ++ + L+L  +L  +++   +  +++ ++ P++ V++ ME  GI +D   
Sbjct: 495 VAQVAPYAAADAEITLRLKPILEERMLKAGVTRLFQDVEMPLVPVLADMEWNGILLDVPF 554

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG---AKTKTGQWK 651
           L+++  E+S+ L  +E+ IY L G  FN++S +QL  +LF +L+        KT  G + 
Sbjct: 555 LQRMGVELSQRLAEIEKEIYALVGHPFNINSTQQLSRVLFEELRLEPPDRRKKTSAGLYS 614

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+A+ LE++  G +P++  ILE R+LSK+KSTY D+LP  +N RT RVHT ++   ++TG
Sbjct: 615 TSAEVLEELR-GRHPVLDLILENRELSKLKSTYVDALPQQVNPRTGRVHTRFNQTGSVTG 673

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RLAS +PNLQNIP +TDLG+++R AFI+     L+S DYSQIELRI+AH+A    +   F
Sbjct: 674 RLASSDPNLQNIPTRTDLGRQVRNAFIADEGWVLLSVDYSQIELRIVAHVANDEAMLAAF 733

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   AA I+GV +E V+ +MRRHAK INF +IYG+S F L+    +  +EA ++
Sbjct: 734 RAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMSAFGLSRSADLTLAEAENF 793

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP-KSSIRNINERAAINA 890
           +K YF +FPG+  +++  +    + GYVET+ GRR ++  + +P   +++   ER AINA
Sbjct: 794 VKAYFEQFPGVKRFLDDLRRRAAREGYVETLLGRRRYFPNLKNPANPALKAREEREAINA 853

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AMI + ++L       ++LLQ+HDELV EVP EE+   ++++ H ME 
Sbjct: 854 PIQGTAADIIKLAMIRLPEALRAAGSRARLLLQVHDELVLEVPREEMPGTAKLVQHVMET 913

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L++PL    +   NW E
Sbjct: 914 A----YPLQIPLTTEARWGKNWGE 933


>gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1]
 gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1]
          Length = 965

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/997 (31%), Positives = 501/997 (50%), Gaps = 60/997 (6%)

Query: 1   MQKENHLFL-VDGSSFIYRAFYATPL-LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M     L L +DG +  YRAF+A      R   G P  A+ GF + +   ++    +   
Sbjct: 1   MSNNRPLLLLIDGHALAYRAFHALAEAGLRSSTGEPTYAVFGFTSAMLNAIEEYHPD--- 57

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            + AV FD    TFR+++Y +YKANR + P     QL  ++    AF IP     G+EAD
Sbjct: 58  -YAAVAFDV-GKTFRDDLYAEYKANRAETPAEFEQQLERIKQVLAAFDIPIYTADGYEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHVIKK 171
           D+I T    A + G  V I++ D D +QLV     +         +    +  +  V  +
Sbjct: 116 DVIGTLARQATERGVDVLILTGDTDTLQLVDEHVTVLLNNPYVRGSKNTTRYGVADVCAR 175

Query: 172 W-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           + G+ P+++  L+ L GD  DNIPG+ GIG   A  LL ++G++EN+  +      K+ +
Sbjct: 176 YKGLRPDQLADLRGLKGDPSDNIPGVKGIGEAGAIALLNQFGSIENLYDHLDE-APKRYQ 234

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVA 289
           +++    + A  S+KL  +  D P+T+ L    L D +  R+I+  + LEF   L+ R+ 
Sbjct: 235 KHLEGQRDAALFSKKLATIVRDAPVTLDLPAATLADYDRSRVIAVFQELEFGASLVRRLP 294

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
            +    A    P V      +    A  T    D   + + F          N   TP  
Sbjct: 295 PSQTIAAPQALPPVEPPAPLQVDMFAPATPGPDDGPQQLTLF----------NDMPTPVA 344

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
             +E     +        Y    N  D++  V +L+     +F   T   +      + I
Sbjct: 345 PVVEPPAHDA-----PGEYRAACNDADLEAIVTELKHASLFAFDTETRGTNPLRDDLVGI 399

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A++T+             ++ L   T +         + +++ L+ FF +    +I HN 
Sbjct: 400 ALATIPGSG--------WYVPLGHTTGE----AQLPRERVIAALRPFFADPARSRIAHNA 447

Query: 470 KYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-----TRKEILKS 523
           K+D  VL R GI + G   D ML + +LD      ++  +A   L+      + + ++  
Sbjct: 448 KFDIEVLERAGIPVAGVAFDTMLAAALLD---KRRNLKDLAFYELNLAAPLESIEALIGK 504

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQ 582
            K+ +    +  ++   +A  ++++ L+L   L  KL     +  V+ RL+ P++ V+ +
Sbjct: 505 GKNQVTFADVPIARATPYAAADADMTLRLKPALEAKLRAAGSVADVFYRLEMPLVPVLVR 564

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF-TKLKFPS 641
           ME  GI +D   ++ +   + + L  +E+ IY ++G+ FN++S  QL ++LF  K+  P+
Sbjct: 565 MEQAGILLDVPYMRALGERMGRELEQIEQQIYAIAGQTFNINSGDQLSEVLFGPKINLPT 624

Query: 642 G--AKTKTGQWKTTAQDLEQINCGDNP-IIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
               +T+TG++  TAQ LE++   D   II+ IL  R+LSK+KSTY D LP  +N  T R
Sbjct: 625 TGLDRTRTGRYSLTAQALEELQASDTTGIIELILRHRRLSKLKSTYVDELPALVNPETGR 684

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT Y+     TGRL+S  PNLQNIP +T+ G+++RR FI+ P   LI+ADYSQIELR+L
Sbjct: 685 VHTDYNQLGAATGRLSSNSPNLQNIPTRTEEGREVRRGFIAAPGHLLIAADYSQIELRVL 744

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+     L Q F    DIH   AA +FGV    V    RR AKT+ F +IYGISPF LA
Sbjct: 745 AHMTGDPNLIQTFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIYGISPFGLA 804

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L I R +A   I   F +FP I +YI++T +  R  GYV+++FGRR    ++      
Sbjct: 805 QRLGISREQARGLIDSLFDQFPRIRDYIDRTLDIGRSEGYVQSLFGRRRPMFDLRVS-GP 863

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AIN PIQ +AADI + AMI+V   L+  ++ T+MLLQ+HDEL+FE PE E+ 
Sbjct: 864 RRQAAEREAINHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIFEAPEAEVD 923

Query: 939 TASQIIVHSMEKACLP-KINLRVPLKVNIKVSNNWQE 974
               ++   ME      +    VPL+V I+   NW+E
Sbjct: 924 DVVALVRERMEGVLHGMEPPFAVPLRVEIETGPNWEE 960


>gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.]
          Length = 912

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/980 (33%), Positives = 523/980 (53%), Gaps = 98/980 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  LFL+DGS++IYRA++A   LS    G P NAI GF  +L KL++    +    +  +
Sbjct: 24  DKTLFLIDGSAYIYRAYHAIRNLSNSK-GFPTNAIFGFTRILIKLIE----DWAPKYVVM 78

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR++I+ DYKA RP +PE L  Q+P ++  T+AF +P IEIQG+EADDII T
Sbjct: 79  VFDAKGPTFRHDIFKDYKATRPPMPEDLQVQIPFIKEITKAFNLPVIEIQGYEADDIIGT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AE+ GF+V +++ DKD +QLV+  + ++D +K++  D++   K +G+ PE+M+ + 
Sbjct: 139 LARKAEESGFSVVMVTGDKDFLQLVTDKSIIWDPMKDKITDLDAFRKDFGLIPEQMIDVM 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L+GD+ DN+PG+PGIG KTA  L++ +G++                +N+ +  ++    
Sbjct: 199 GLSGDTSDNVPGVPGIGPKTALDLIKTFGSM----------------KNLYDNIDSITKK 242

Query: 244 RK---LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++   LV  +    ++  L      + +    I+F                         
Sbjct: 243 KQYENLVQFKEQADLSRKL-----VEIDKNAPINF------------------------- 272

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              +D    +N      +E+ ++   +  Q S                            
Sbjct: 273 --EIDSFCFKNPDNPRLSELFQEFEFRQLQQS------------------------FSGH 306

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             ++  +Y+ I N K + + +++LE+    +    T + +   +K + I++S    +   
Sbjct: 307 SDLSGKNYSIIDNIKSLSELLRRLESANHFALDTETTSENPLKAKLVGISVSLKANE--- 363

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I L+     +   K     E L+ LK  FEN    KIG NIKYD +VL R+G
Sbjct: 364 -----AFYIPLAHKY--EGVPKQLDMNETLNMLKGVFENPDIKKIGQNIKYDWIVLKRHG 416

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I + G + D M+ SY+++  + +H++  IA  +L +     +E +  +K       +   
Sbjct: 417 IDIAGVYSDTMIASYLINPSKRAHNLDQIALDFLGHKKITFEETVGKKKPESGFSNVPLE 476

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E++++ L    +L PKL+   L  ++E ++ P+I V+ +MEI GI +D++ L 
Sbjct: 477 KAVSYACEDADITLMAHDVLFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLS 536

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S    + +  LEENIY ++G  FN+ SP+QLG++LF KL  P   KTK     +T  D
Sbjct: 537 ELSKHFEQQIEDLEENIYSVAGMTFNIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVD 596

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           +      ++ +   +L  R LSK+KSTY D+L    +  T+R+HT ++   T TGRL+S 
Sbjct: 597 VLTELAQNHELPALVLRHRTLSKLKSTYTDALLEIADPETERIHTSFNQTVTATGRLSSS 656

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIP+KTD G++IR AF+     KL+SADYSQIELR+LAH A+   L   F    D
Sbjct: 657 NPNLQNIPVKTDEGREIRSAFVPKKGWKLLSADYSQIELRLLAHCAEDEILINAFLEDED 716

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A EIF +  E ++P++R  AKTINFSI+YGIS F L+  L I +  A  YI  YF
Sbjct: 717 IHTRTAIEIFQIFPEFITPELRYQAKTINFSIMYGISAFSLSKDLGISQKMAQTYINNYF 776

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+  +  +I+KT +    N    T+ GR     +I+S    +    ER A+N PIQG+A
Sbjct: 777 ARYKEVKRFIDKTISDAHVNKKTSTLLGRIRLLPDIDSSNKIVIAAAERIAVNTPIQGTA 836

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI++ K+  + KL   MLL +HDELVFEVP +E+   S ++ + ME       
Sbjct: 837 ADLIKIAMINIDKAFTEKKLKAAMLLSVHDELVFEVPPDELDMVSDLVKNMMENV----W 892

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L+VPLKVNI    NW + +
Sbjct: 893 TLKVPLKVNISSGENWSQAH 912


>gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
          Length = 922

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/981 (32%), Positives = 509/981 (51%), Gaps = 78/981 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVDGSS++YRAF+A P L R  +G P  A+ G   ML +L +         + A +
Sbjct: 11  PTLLLVDGSSYLYRAFHAMPDL-RGPEGQPTGALYGMVAMLRRLREQYPVAKGYRYAACV 69

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN +Y  YKA RP +P  L+ Q+  +  A +  G P +E+ G EADD+I T 
Sbjct: 70  FDAKGPTFRNAMYDQYKAQRPPMPPDLVAQIEPIHQAVRLMGWPLLEVPGVEADDVIGTL 129

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A  +G    + + DKD+ QLV+    L +T+  E +D   V +K+G+PP+++V    
Sbjct: 130 AVRAHAQGIRTLVSTGDKDMAQLVNDHITLVNTMSNEVLDPAGVQQKFGVPPDRIVDYLT 189

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+PG+  +G KTA   L EYG+L+ ++  A  +      +N+    +    +R
Sbjct: 190 LVGDAVDNVPGVDKVGPKTAVKWLTEYGSLDALIEQAETVSGA-AGKNLRAALDWLPTAR 248

Query: 245 KLVMLRTDVPITIPLE----HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           KLV + TD  +    +     L     +   L+ F       +    +      + A  +
Sbjct: 249 KLVTIHTDCDLDGYAQAFDPDLRPAPEDAQALLPFFTRNGMRRFSAEMKAQTVSEQAARQ 308

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             +LD      K                                                
Sbjct: 309 VSLLDGAPAAEKSA---------------------------------------------- 322

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  +++      W+ +++     +    TD++D   ++ I I++S    +   
Sbjct: 323 ----PGTYDTVLDWDRFDAWLTRIDAAELTAIDTETDSLDPMRARLIGISLSVTPGE--- 375

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L+   +     +     E+L  L+ + EN    K+G N KYD+ V    G
Sbjct: 376 -----AAYLPLAH--AYPGAPEQLPMAEVLERLRPWLENADKPKLGQNAKYDRHVFANAG 428

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS----YTRKEILKSRKSSIPIDKISD 535
           +++RG+  D +L SYV+++ +  H + S+  + L      + +++      +I  D+++ 
Sbjct: 429 VTIRGYAHDTLLESYVIEAHK-PHSLDSLVSRHLGRDDTLSYEQVCGKGAKAITFDQVAL 487

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                ++ E++++ LQ+   L P++  +  L     L+  + +V+ ++E TG+ +D DLL
Sbjct: 488 DVATRYSGEDADLTLQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLL 547

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +  S E+   + +LE   ++L+G  FNL SPKQ+G+ILF +L+ P   KT +G   T  +
Sbjct: 548 RAQSGELGAKMQTLEAQAFELAGGAFNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEE 607

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++   D P+ + IL+ R LSK+KSTY + LP  IN  T RVHT Y+ A  +TGRLAS
Sbjct: 608 VLEKL-AEDYPLPRVILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVAVTGRLAS 666

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++T  G++IR AF++P    + S+DYSQIELRI+AH+++   L   F    
Sbjct: 667 NDPNLQNIPVRTAEGRRIREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGE 726

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAEIFGV   +VS   RR AK INF +IYG+S F LA  L + RS A  YI RY
Sbjct: 727 DIHRATAAEIFGVTSLEVSSDQRRMAKVINFGLIYGMSAFGLARNLGLERSAAQLYIDRY 786

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+  Y+E+T+    + GYVET+FGRR+   +I++     R   ERAAINAP+QG+
Sbjct: 787 FARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDIHAS-GPRRAAAERAAINAPMQGT 845

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI+V  +L   KL +++++Q+HDELV EVPEEE     + I   M       
Sbjct: 846 AADLIKMAMIAVDAALVREKLRSRVVMQVHDELVLEVPEEETHWVREHIPRLMAGVA--- 902

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L VPL   + +  NW+  +
Sbjct: 903 -QLDVPLLAEMGLGANWELAH 922


>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
 gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
          Length = 892

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/980 (32%), Positives = 512/980 (52%), Gaps = 93/980 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++  ++L+DGSS+IYRA+YA   LS    G P NA+ GF  ML K+++  + +    H
Sbjct: 2   MSEKPTIYLIDGSSYIYRAYYAIRHLS-SPKGFPTNALYGFIQMLLKVIKEKKPD----H 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AVIFD    TFRNEIY DYKANR  +P+ L  Q+  ++ A +AF IPA+E+ GFEADDI
Sbjct: 57  LAVIFDAGRQTFRNEIYADYKANRAAMPDDLRQQIEPIKEAVRAFNIPALELAGFEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T     E++G A  +++ DKDLMQ+VS    L DT+K++      V++++G+  E+++
Sbjct: 117 IGTIARDCEEKGMAAVVVTGDKDLMQIVSDNVTLLDTMKDKVSGPAEVVERFGVGSERVI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +  L                          G+  + +     I +K   + + ++    
Sbjct: 177 DILGLA-------------------------GDSSDNIPGVPGIGEKTAIKLVNDFGSLD 211

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L   L                 ++   G RL  F +     +L  R+AT          
Sbjct: 212 EL---LARAN------------EVKGKTGERLQEFAEQ---ARLSRRLATIDCHVPLAWS 253

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +  +N+ +A           K   F++L                     +  S+
Sbjct: 254 YDDFAASPQDNRRLA--------ELFKEYGFTTL-------------------MKELTSE 286

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             ++ + Y  ++++ D    V++L  + + +  + T +++   ++ + I+ S  +  +  
Sbjct: 287 ATLSAEDYRTVLSSDDFTALVRQLTAVRAFAVDLETTSLNPLEAEIVGISFSFREH-EAY 345

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              V   +       S+D         ++L  LK    +    KIG NIKYD  VL R G
Sbjct: 346 YIPVGHRYPGAPHQLSRD---------DVLGALKPLLLDPEKHKIGQNIKYDYQVLRRAG 396

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I M+G   D ML SY+L+  R+S  + S+A ++L +      E+    K      ++   
Sbjct: 397 IDMQGIWCDTMLASYLLNPTRTSQGLDSLAVEFLDHRMISYAEVAGKGKEQKNFAQVEVE 456

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   ++ E+++    L  L  P+L    +  ++  L+ P++ ++++ME+ G+++D  LL+
Sbjct: 457 KASVYSCEDADATYLLHKLFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLLQ 516

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S      L  LE  I+ L+G +FN++SPKQLG++LF +L+   G KTKT    +T  D
Sbjct: 517 RLSDGFGGQLADLEREIFALAGGEFNVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNVD 576

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +   G++ I + IL++R LSK+KSTY D+LP  ++  + RVHT Y+ A T TGRL+S 
Sbjct: 577 ELERLAGEHEIARLILQYRSLSKLKSTYTDALPKLVDAASGRVHTSYNQAVTNTGRLSSS 636

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI+++ G+ IR AFI+     L+SADYSQIELR+LAH++        F    D
Sbjct: 637 EPNLQNIPIRSEEGRSIRHAFIAAEGCLLLSADYSQIELRVLAHLSADRVFCDAFARDED 696

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AAE+FG+  + V+ +MRR AKTINF +IYG   F LA +L +    A ++I  YF
Sbjct: 697 IHTRTAAEVFGLFPQMVTQEMRRQAKTINFGVIYGQGAFSLARELGVSTKVAKEFIDNYF 756

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R  G   +++        NGYV TI GRR+   +I S   +IR   +R A+N PIQGSA
Sbjct: 757 ARHAGARTFLDGCVREAEDNGYVTTILGRRLPIPDIKSSNGNIRAFAQRNAVNYPIQGSA 816

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI ++AM+ V   +E   + +++++Q+HDELVFEVPEEE      ++ H ME A    +
Sbjct: 817 ADIIKQAMVRVVDRMEREGMKSRLIMQVHDELVFEVPEEEKLAMEMLVKHEMEHA----V 872

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            LRVPL+V++    NW E +
Sbjct: 873 TLRVPLRVDMNFGRNWSEAH 892


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/975 (33%), Positives = 522/975 (53%), Gaps = 48/975 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
           +L+D    +++ F+A P ++    G P NA+ GFC  L  L++  +     +      D 
Sbjct: 23  WLIDVFGVMFQVFHAIPPMT-SPAGQPTNAVFGFCRDLLWLIEKQK----PTWLICAMDS 77

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
           P    R   YP+YKANR ++PE L PQ+PL++   +AFG+P I+  G+EADD++A+    
Sbjct: 78  PGPGIRESWYPEYKANRTEMPEDLRPQIPLLKEVFEAFGLPIIQQDGWEADDVLASLAAQ 137

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
             + G  V I++ DKD  QL++P   +Y+  K    +   ++++WGI P+++V  Q L G
Sbjct: 138 FARHGTDVAIVTNDKDARQLLTPQIQIYNLRKMTWFNEASLLEEWGIRPDQVVDFQGLVG 197

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D++DN+PG+P +G K AA LLQ++  LE +L +A +    K +EN+  +AE ARLS+KLV
Sbjct: 198 DAVDNVPGVPLVGPKKAAALLQQFETLEGVLAHADQAPGAKLKENLKNFAEQARLSQKLV 257

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
            L T++ +    E       +  +L +  + L F KL++        +AA +   V    
Sbjct: 258 RLNTELQLDFDPEAGRHFRPDVEKLQALFRRLGFRKLVD--------EAARVLGQVPSSA 309

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
            +  +  A  T    D     +   S  +  + + S+       L+RL++  +       
Sbjct: 310 ASTTQNSATTTPSLNDGNPAENSLFSAPENNTVVPSKP------LQRLERTWEM------ 357

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
              +   + +    ++L  +      + T  +D    + +  AI+   Q       V   
Sbjct: 358 ---VNTPEGLAALSRQLPLLTQICIDLETTGLDPLRDEIVGWAIAWAAQHGQPGRAVYLP 414

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
            +        D T        ++  LK   EN     I  N+K+D L + + GI      
Sbjct: 415 VLGPPGSVLLDGTA-------VVQTLKPILENPQCQLINQNVKFDLLAMRKVGIRPATIG 467

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            D M+  Y+LD+G  SH++  + QK+LS       ++L S K+   +++I   +V E+A 
Sbjct: 468 LDTMVGDYLLDAGARSHNLEVLGQKYLSAATIPISDLLGSGKNQKTMNQIEIERVAEYAT 527

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           E++ +++++  ++  +L    L  +Y+ ++KP+I V++ ME  GI++D   L++ S E+S
Sbjct: 528 EDAELVVRMAPIIESQLQEAGLWKLYDEVEKPLIPVLADMEFKGIKVDVPELERQSQELS 587

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             L  L   I++L+G +FN+ SP QL  ILF +LK P   KTKTG   +T Q++ ++   
Sbjct: 588 ITLARLMSEIHELAGREFNIDSPMQLRKILFEELKLPVQKKTKTG--PSTDQEVLELLAP 645

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P+   I E R L+K+K TY D+LP  ++ ++ R+HT ++     TGRL+S +PNLQNI
Sbjct: 646 LHPLPAKITEHRHLTKLKGTYLDALPLLVHPQSGRIHTSFNQVVAATGRLSSSDPNLQNI 705

Query: 724 PIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           PI+T  G +IRRAF+S  P  +L+ ADYSQIELR+LAH ++   L   FE+  DIHR+VA
Sbjct: 706 PIRTPEGSRIRRAFVSCDPEWRLVCADYSQIELRMLAHFSQDPALVSAFEHGEDIHRLVA 765

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           A++  V +E V+  MRR AK +NF ++YG SP+ L+  L I R  A  +I  YF R+ G+
Sbjct: 766 AQVHQVALEDVTSDMRRIAKAVNFGVMYGQSPYGLSAALGISREAATTFIDEYFTRYAGV 825

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP--KSSIRNINERAAINAPIQGSAADIT 900
             ++E   +     GY  TI GRR   + +  P  ++  RN+ ER  IN  IQGSAAD+ 
Sbjct: 826 TTFMENVLDECLATGYARTILGRRRPIEGVRGPRERNRNRNMAERTGINTVIQGSAADLI 885

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI VH  LE      ++LLQIHDELV E P         ++   M KA    + L V
Sbjct: 886 KMAMIRVHHRLERENHPGQLLLQIHDELVLEAPAHLAEELGALVSEEMTKA----LPLDV 941

Query: 961 PLKVNIKVSNNWQEE 975
           PL+V++ +  NW + 
Sbjct: 942 PLEVDVAIGTNWLDA 956


>gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120]
          Length = 810

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/866 (36%), Positives = 476/866 (54%), Gaps = 67/866 (7%)

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++ 
Sbjct: 1   GTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIID 60

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILE 235
             AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +
Sbjct: 61  FLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQ 120

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       
Sbjct: 121 NKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQ 180

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A   +P                            Q +S++D+  ++ +            
Sbjct: 181 AKGAKPAAK------------------------PQETSVADEAPEVTA------------ 204

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                  I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +   
Sbjct: 205 -----TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEP 259

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                   V   ++D                +  L  LK   E+E  LK+G N+KYD+ +
Sbjct: 260 GV-AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGI 309

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
           L  YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  +
Sbjct: 310 LANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFN 369

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQI 590
           +I+  +   +A E+S+V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++I
Sbjct: 370 QIALEEAGRYAAEDSDVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKI 429

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D  +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G  
Sbjct: 430 DPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAP 489

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T T
Sbjct: 490 STSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTAT 548

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   
Sbjct: 549 GRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTA 608

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  
Sbjct: 609 FAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQK 668

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINA
Sbjct: 669 YMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINA 728

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME 
Sbjct: 729 PMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMEN 788

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL V +    NW + +
Sbjct: 789 CT----RLDVPLLVEVGSGENWDQAH 810


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/977 (33%), Positives = 517/977 (52%), Gaps = 91/977 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + +++LVDGS+++YRAF+A   LS    G+P NA  GF  +L KL++  + E    + AV
Sbjct: 2   KQNIYLVDGSAYLYRAFHAIRSLST-STGIPTNATFGFTRILLKLIKEKQPE----YVAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRN ++  YKANRP +P+ L  Q+P ++   +A  IP +E  GFEADD+I T
Sbjct: 57  FFDVKGPTFRNAMFDAYKANRPPMPDDLRLQIPYIKEVVKALNIPIVEKTGFEADDLIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           Y  +AE++GFAV +++ DKD MQLV+    ++D +KEE ID   +  K G+ P +++ + 
Sbjct: 117 YARLAEEKGFAVVMVTGDKDFMQLVTDNAVIWDPMKEEIIDKRAISDKLGLTPIQVIDML 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD+ DNIPG+PG+G KTA  L+ E+GN++ I  N   +K KK               
Sbjct: 177 GLAGDTADNIPGVPGVGPKTAQKLIAEHGNMKTIYDNLESLKSKK--------------- 221

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                                       L + L        ++R   T D + A   P+ 
Sbjct: 222 ---------------------------SLYAKLTDNRDQAFLSRDLVTIDRNVAVEIPLD 254

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             I +  + G   E         K  +F+ L  +     +                    
Sbjct: 255 EFILSPFDHGRLAE-------IFKELEFTKLYQEFKPTQAPA------------------ 289

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  +     +++ ++  +     S    T +     +K + I+ +    +      
Sbjct: 290 -EKEYILVTGLDQLKKLIETFKQADILSVDTETTSKHPMLAKLVGISFAVEPHR------ 342

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I +  HT  D+  K      +++ ++   EN    K+G NIKYD +VL R+GI M
Sbjct: 343 --AYYIPVG-HTGMDAK-KQPDLSRVIALIRPLLENPEVKKVGQNIKYDYIVLTRHGIRM 398

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539
           +G   D M+ S++L+  +  H +  IA   L +     KE+  S K+ I  +++      
Sbjct: 399 QGLGFDTMIASHLLNPSQRGHSLDKIAMDLLDHKTIRYKEVTGSGKTQIGFNEVEIQTAL 458

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A E++++ L    +L+ KL    LL +  +++ P+I V++ ME+ GI++D+  L ++S
Sbjct: 459 DYAAEDADITLLCHGILKQKLQESNLLDLMNQVEMPLITVLADMEMHGIKVDRKKLGELS 518

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
               + +++LE  IY L+GE FN++S +QLG ILF KL+ P+  KTK     +T  ++  
Sbjct: 519 KTFEQEMMTLETQIYALAGETFNINSSQQLGTILFEKLQLPAKKKTKKKTGYSTDVEVLN 578

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + + + IL +R L K+KSTY+D+L   I+  T R+HT ++ A T TGRL+S +PN
Sbjct: 579 ELAEHHELPEKILRYRSLGKLKSTYSDALQELIHPETGRIHTSFNQAITATGRLSSSDPN 638

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+ G+ IR AF+  P   L++ADYSQIELR+LAH A+   L Q F N  DIH 
Sbjct: 639 LQNIPIRTNEGKMIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQSFRNDEDIHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+F    E ++  +RR AK INF I+YG+S F+LA ++ + R  A  YI  YF R+
Sbjct: 699 RTAAEVFQAFPEFITEDLRRQAKAINFGIMYGMSAFKLAKEINVTRKTAQTYIDSYFARY 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+  +I+KT    +  G V TI GR+   ++IN+   ++R + ERAAIN P+QGSAAD+
Sbjct: 759 AGVKRFIDKTIEQAKTTGEVTTILGRKRRLNDINASNVNLRKLAERAAINTPVQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI++ + L+   L ++MLL +HDE++FE P  E      +    ME        L+
Sbjct: 819 IKLAMINMDRELKKTPLKSRMLLSVHDEIIFETPLAEKEALMDLARQVMEGV----FALK 874

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPLKVNI    NW   +
Sbjct: 875 VPLKVNIAAGINWARAH 891


>gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans]
          Length = 903

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/974 (32%), Positives = 500/974 (51%), Gaps = 82/974 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDG+S   RAFYA  LLS    GL  NA+ GF NML KL++  R     +HF V F
Sbjct: 3   KLILVDGNSVANRAFYAVRLLST-RGGLHTNAVYGFANMLLKLIEEER----PTHFLVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+  Y  YKA R + P  L  Q P +R   +AFG+ + E++ +EADD+I T  
Sbjct: 58  DAGKATFRHREYEAYKAGRLQTPPELSEQFPYIRELVRAFGVASGELEEYEADDMIGTLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE EG    +++ D+DL+QLVS    +  T K     E+ D   + +++G  P+++  
Sbjct: 118 KRAEAEGVDTLVVTGDRDLLQLVSDRVTVALTRKGITETERYDPARIREEYGFDPDRIRD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD+ DN+PG+PG+G KTA  LL++YG+LE++L +AS I   K  EN+  +A+ AR
Sbjct: 178 LKGLMGDASDNLPGVPGVGEKTALKLLRQYGSLESVLEHASEIAG-KLGENLRAHADAAR 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS++L  +   VP+    + L L + +   L S L+ LEF  L+ R+             
Sbjct: 237 LSKRLATIDCAVPLQSGWDWLRLGEPDRAALASLLRQLEFKSLLKRLGL----------- 285

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                         +S       + S   P      R   +++ 
Sbjct: 286 ----------------------------DGTSADADVDGVRSSARPADEKRPRAVAVAEE 317

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            ++          +++++ + +LE   S    +     +    +   +A           
Sbjct: 318 GVDVR---CPDRPEEVEEALSRLEAAQSVV--VEVTGDNPHDGEVRGVAWWDG------- 365

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 FI               L +  +  L  +  +    K  H+    ++ L  +G+
Sbjct: 366 --HTAYFIPF-----------ERLVQSDMRPLADWLADARRPKRTHDSHRAEVALFWHGL 412

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           + RG      + +Y+LD   S H +A +++++      E                  +  
Sbjct: 413 AFRGTSFCTHIAAYLLDPTESRHTLADLSRRYGLPPVPEAEDVYGKGAKFKVPDRDTLAR 472

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +    + ++ +L  LL   L    +  ++  L+ P+   ++ ME  G+++D   L     
Sbjct: 473 YVGRKAALVARLVPLLEADLAACGMRSLFYDLELPLSSELAVMETVGVRVDAAALAAYGE 532

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+ +    +E  IY+L+G  FN+ S KQLG+ILF KL  P   KTKTG   +T  D+ + 
Sbjct: 533 ELREAAAKVEREIYELAGTTFNIGSTKQLGEILFDKLGLPVVKKTKTGY--STDADVLEE 590

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +PI++ IL +RQL+K++STY + L   I  +T ++HT+Y      TGRL+S  PNL
Sbjct: 591 LAPYHPIVEKILHYRQLTKLQSTYIEGLLKEIRPQTGKIHTYYQQTIAATGRLSSQFPNL 650

Query: 721 QNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIPI+ + G+KIR+AF+   P   +++ADYSQIELR+LAH++    L + F   +DIH 
Sbjct: 651 QNIPIRLEEGRKIRKAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHT 710

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A ++FGV+ ++V  +MRR AK +NF IIYGIS F LA  L I R EAA++I++YF  F
Sbjct: 711 KTAMDVFGVSEDRVDARMRRQAKAVNFGIIYGISDFGLAQNLNISRKEAAEFIRQYFAVF 770

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+  Y E+     R++GYV T+ GRR +  +IN+   ++R+  ER A+N PIQG+AADI
Sbjct: 771 SGVKAYRERIVEQARRDGYVTTLLGRRRYLPDINASNYNLRSFAERTAMNTPIQGTAADI 830

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ + + + D  L ++MLLQ+HDELVFEVP +E+    +++   ME A    + L 
Sbjct: 831 IKTAMVRLTRRMRDVGLKSRMLLQVHDELVFEVPPDELDAMRELVTDVMESA----VPLD 886

Query: 960 VPLKVNIKVSNNWQ 973
           VPLKV++    +W 
Sbjct: 887 VPLKVDVSWGADWY 900


>gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297]
 gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297]
          Length = 933

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/994 (31%), Positives = 504/994 (50%), Gaps = 90/994 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + LVDGSS+++RAF+A P L+   +GL   AI G  +ML  LL    K    S  AV+F
Sbjct: 7   PVVLVDGSSYLFRAFHALPPLAN-SEGLQTGAIKGVVSMLRNLL----KMYPDSPVAVVF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFRNE+Y  YKANRP +PE L  Q+  +    +A G+P + I G EADD+I T  
Sbjct: 62  DAKGPTFRNEMYDQYKANRPPMPEELREQIEPIHDCVRAMGLPLLCIPGVEADDVIGTLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A   G    I + DKD+ QLVSP   L +T+K E +D+  V  K+G  P+KM+   AL
Sbjct: 122 AQATSCGRDCVISTGDKDMAQLVSPHVTLINTMKNETMDVPGVETKYGFGPDKMIDYLAL 181

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAET 239
            GD +DNIPG+PG+G KTA  L+Q  G L++I      +K       K     + ++ E 
Sbjct: 182 MGDKVDNIPGVPGVGEKTALALIQGLGGLDDIYSRLDEVKDLTFRGAKTMAAKLEQHKEQ 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +L  ++ DV +   +  +  +  +  RL++  K  EF   +  ++          
Sbjct: 242 AYLSYELATIKLDVELETTINDIQPDPIDNDRLLALFKRFEFRTWVREMS---------- 291

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                       +   S        + +EQTP+ +  E      
Sbjct: 292 -----------------------GDDASSPAKSETKTSAPTVQAEQTPESIEPESTD--- 325

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  I     + + VQ+ +     ++  +           + +A++T   +  
Sbjct: 326 --------YRLITTQDGVDELVQEAQRTQRLAYLPVFVKGHYLEPNWVGLALATEPGRG- 376

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                            Q    K     E+ + L   FE+   +K G++IK D    +  
Sbjct: 377 ------------WYLVFQSEESKVLDEAEVFNKLIPLFEDHAIVKTGYDIKADYHWFNAL 424

Query: 480 GISM-RGFEDIMLMSYVLDSGRSSH----------DIASIAQKWLS----YTRKEILKSR 524
            IS  R   D+ +M++V DS                I ++  ++L          + K+ 
Sbjct: 425 NISPSRLLNDVQVMAFVYDSTLKRDKSLSAHFSHLSIDNLVIQYLQKSPKTVEDYLGKAG 484

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K  +    +    + +   E ++ +L+L   L   L   +L  VY+ +++P+   ++ +E
Sbjct: 485 KRQLSPSAVKADDIGQWWAERADFVLRLGQWLEQGLASRQLSRVYQEIERPLSKTLAAIE 544

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G+++D + + ++S    ++L  +E   +DL+G +FNL SPKQL D+LF ++  P  +K
Sbjct: 545 ENGVKLDVEFVHELSTRFKRDLEDIERQAHDLAGVEFNLDSPKQLADVLFERMGLPVKSK 604

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI--NKRTQRVHTF 702
           T +G   T  + L ++   ++ + + IL+ R+L K+  TY D LP     +   QR+HT 
Sbjct: 605 TASGAPSTNEEVLTELAA-EHELPRLILQSRRLRKLVGTYTDPLPTMTIDHDGDQRLHTT 663

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y+     TGRL S +PNLQNIP++++ G+ IR+AF++P   ++++ADYSQIELRI+ H++
Sbjct: 664 YNQTGAQTGRLNSNDPNLQNIPVRSEEGRSIRKAFVAPQGYRIVAADYSQIELRIMTHLS 723

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L Q F    DIHR  AAE+ G+  E+VS + RR AK INF +IYG+S F LA QL 
Sbjct: 724 QDANLIQAFREGKDIHRATAAEVMGIEEEQVSAEQRRSAKAINFGLIYGMSAFGLARQLG 783

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R+EA  Y+  YF R+PG+  Y+++T+    ++GYVET+FGRR++   I S     R  
Sbjct: 784 ISRTEAKTYVDAYFERYPGVRRYMDETRAEAAESGYVETVFGRRLYLPGIQSSNQIARKA 843

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AINAP+QG+AADI + AM+ V   L +  L  +M++Q+HDELVFEV E+++   ++
Sbjct: 844 AERTAINAPMQGTAADIIKMAMVDVDNWLSNSSLRARMIMQVHDELVFEVHEDDVAALTE 903

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +   M+       NL VPL V++    +W+E +
Sbjct: 904 GVRFRMQHCA----NLDVPLIVDVDTGASWEEAH 933


>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
 gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
          Length = 892

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/979 (32%), Positives = 514/979 (52%), Gaps = 93/979 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   L+L+DGSS+IYRA++A   LS   +G P NA+ GF  ML K++    K+   +H 
Sbjct: 3   TERETLYLLDGSSYIYRAYFAIRHLS-SPNGFPTNALYGFTQMLLKVM----KDRAPAHV 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD   +TFRNE++P YKA R  +PE L  Q+  ++   +AF IPA+E+ G+EADDII
Sbjct: 58  AVVFDAGKITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFSIPALELPGWEADDII 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    AE  G    +++ DKDLMQ+VS    L DT+K++   I  V +K+G+ P ++V 
Sbjct: 118 GTIARKAEAAGMDCVVVTGDKDLMQIVSEHVTLLDTMKDKSFGIPDVHEKFGVGPGRVVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL GD+ DNIPG+PGIG  TA  L+QE+G           +                 
Sbjct: 178 VLALWGDTSDNIPGVPGIGEVTAKKLMQEFGT-------LDEL----------------- 213

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
               L                 ++   G RLI F         + R   T DCDA    P
Sbjct: 214 ----LAR------------ACEVKGKTGERLIEF----ADQARLCRTLATIDCDA----P 249

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           +  +I+      +            +   F++L    +                   S  
Sbjct: 250 IEYNIDDF---AVTPPDNRRLAALFREYGFATLLKDLT-------------------SSP 287

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            ++ D Y  ++   ++++ V+KL+   + +  + T +++   +  +  A+S L   +   
Sbjct: 288 TLSCDHYALVLTEAELRELVEKLKKAPAFAIDLETTSLNPLDASIVGYAVSCLAH-EAYY 346

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             +   ++       +    +                +    KIG N+KYD  VL + G+
Sbjct: 347 IPIGHRYLGAPEQLPEALVLELLGPLLT---------DPDRKKIGQNLKYDYQVLQQSGV 397

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
            + G   D ML +Y+++  R+S  + ++A ++L +      E+  + K  +   ++   +
Sbjct: 398 ELAGIWCDTMLAAYLVNPSRNSQGLDALALEYLDHRMISYAEVAGTGKCELNFSEVDLDR 457

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E+++    L  +L PK+  + +  +   ++ P++ +++ ME+ G+++D +L+K+
Sbjct: 458 AGPYSCEDADATYLLHEILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKE 517

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S    + L+ LE  I++  G  FN++SPKQLG++LF ++    G KTK     +T  + 
Sbjct: 518 LSTGFGRQLIELEAKIHEHCGGSFNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEE 577

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +    ++ + + +L++R +SK+KSTY D+LP  ++ +T RVHT Y+ A T TGRL+S +
Sbjct: 578 LERLAEEHEVARLLLQYRSISKLKSTYTDALPRLVDPKTGRVHTSYNQAITNTGRLSSSD 637

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G+ IRRAFI+ P   ++SADYSQIELR+LAH++    L + F    DI
Sbjct: 638 PNLQNIPVRGEEGRGIRRAFIAEPGSLILSADYSQIELRVLAHLSGDRVLCEAFAAGEDI 697

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+  E V+ +MRR AK INF +IYG   F LA +L +   +A  +I+ YF 
Sbjct: 698 HRRTAAEVFGMFPELVTAEMRRQAKVINFGVIYGQGAFSLAKELGVAPKQAKAFIENYFE 757

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R  G   ++++        G+V TI GRR+   EI S   + R   +R A N PIQGSAA
Sbjct: 758 RHSGARSFLDRCIAEAETCGFVTTILGRRLQIPEIASKNGNARAFAQRNATNYPIQGSAA 817

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V + + + K+A+++++Q+HDELVFEVP  E      ++   ME A    + 
Sbjct: 818 DIIKAAMIRVTRRMLEEKVASRLIMQVHDELVFEVPRNERELMEDLVRAEMEGA----LP 873

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPLKV++    NW E +
Sbjct: 874 LSVPLKVDLNFGLNWAEAH 892


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/988 (32%), Positives = 523/988 (52%), Gaps = 71/988 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + +  LFL+D  + IYRA++A     R    G   +A  GF N+L  +L   +     +H
Sbjct: 22  ESDKKLFLLDAFALIYRAYFAFAKNPRVNSKGQNTSAAFGFTNVLIDILNKEK----PTH 77

Query: 61  FAVIFDY-PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+FD     T RN  + DYKA+R ++PE +   +  ++   +AF IP    +G+EADD
Sbjct: 78  IAVVFDPPGGATNRNVDFADYKAHREEMPEDIRSMIEPIKQVIKAFRIPIYMAEGYEADD 137

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIP 175
           +I T   +AEKEGF   +++ DKD  QLVS    +Y   +       + ++ V +K+ + 
Sbjct: 138 LIGTMAKMAEKEGFKTYMMTPDKDFGQLVSENIFIYKPGRGGDPAVIMGVKEVCEKFEVE 197

Query: 176 PE-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
              +++ +  L GD+ DNIPGIPG+G KTA  L+ +YG++E +  N   +K  K +EN++
Sbjct: 198 NPLQVIDILGLWGDAADNIPGIPGVGEKTAKKLIADYGSMEGVFENVEDLKG-KMKENVI 256

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
            + E   +S+ L  +  D P+    E L  E+ +   ++     LEF  L  RV      
Sbjct: 257 NFKEQGLMSKLLATIILDAPVEFSAEELKTEEVDRDAILEIFTDLEFRNLAKRV------ 310

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                              I  E  +      +  Q      Q+     +  P       
Sbjct: 311 -------------------IGEEIVVTSAGVNENGQLDLFGTQSLVDVQQAQP------- 344

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
              +        SY  +   ++ +  + KL    S  F   T  ++A H+  + ++ S  
Sbjct: 345 TSGVKTIATEKASYHLVNLPEERKALLTKLLKEKSVCFDTETTDINALHADLVGMSFSYK 404

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +++          ++ +     +         + I+   K FFE++   KI HN+KYD  
Sbjct: 405 ERE--------AYYVAVPKDKKE--------IQAIVDEFKPFFEHKSIEKIAHNMKYDIQ 448

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIP 529
           VLHRYG+   G   D M+  Y++    S   +  +A+ +L+YT   I     K  K    
Sbjct: 449 VLHRYGVQFAGPLFDTMIAHYLIQP-ESKQGMDFLAEYYLNYTPVSIETLIGKKGKGQGN 507

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +    + ++A E++++  QL  L  P++  + L  ++  ++ P++ V+++ME  G+ 
Sbjct: 508 MGDLQPEAISDYACEDADITFQLKQLFAPQIEKDHLKSLFYDMEMPLVSVLAEMEEEGVA 567

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID   L+  S ++++    LE+ I +L+G  FN+ SPKQLGD+LF  +K  S AK     
Sbjct: 568 IDIPHLEAYSKQLAEETEGLEKRIKELAGMDFNVDSPKQLGDVLFEHMKISSKAKKTKTG 627

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
              T++D+ Q +  D+ II  IL++RQ+ K+KSTY D LP   +    RVHT Y    T 
Sbjct: 628 QYATSEDILQQHKNDHEIIPCILDYRQMKKLKSTYVDPLPTMKDPVDGRVHTSYMQTVTA 687

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIPI+++ G++IRRAFI+     +L+SADYSQIELRI+A +A  T + 
Sbjct: 688 TGRLSSNNPNLQNIPIRSERGKEIRRAFIARSKDFQLMSADYSQIELRIIAALADDTNMI 747

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F++ +DIHR  AA++F V ++ V+   R  AK +NF IIYG S F L+  L I R+EA
Sbjct: 748 QAFKDKVDIHRATAAKVFHVELDDVTKDQRSAAKAVNFGIIYGQSAFGLSQNLGISRTEA 807

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
              I  YF ++  I  Y++      R+NGYVETI  RR +  +INS  + +R   ER A+
Sbjct: 808 KQIIDSYFAQYSTIKTYMDNAVKDARENGYVETIMQRRRYLPDINSANAVVRGFAERNAV 867

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AM++V K+++  K+ +KM+LQ+HDELVF+V  +E     +++  +M
Sbjct: 868 NAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDELVFDVHNDEQEVMKKLVKEAM 927

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A    I L VP++V ++++NNW + +
Sbjct: 928 ENA----IQLVVPMEVEMELANNWLDAH 951


>gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
 gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
          Length = 946

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/986 (33%), Positives = 524/986 (53%), Gaps = 77/986 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +K+  LFL+DG + +YRA+YA      +  DGLP  A+ GF + L K+ +  + +    +
Sbjct: 27  EKKPALFLIDGMAMVYRAYYALQSARMKTRDGLPSGAVFGFTSALLKIFETYKPD----Y 82

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+++Y  YKANRP  PE L+ QL  +       GIP I+  GFEADD+
Sbjct: 83  LAVAFDSREKTFRHDLYDLYKANRPSPPEDLISQLDAIYQLVTLLGIPIIKTAGFEADDL 142

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176
           I +     EK   A+ I++ DKDL QLV+    +    K     E + I+ +  ++G+ P
Sbjct: 143 IGSLARKFEK-SCAIYIVTPDKDLAQLVNDEVYILKPGKIQNELELLGIKEITIQFGVRP 201

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+     AL GD+ DNIPG  GIG KTAA L+ +YG++ +IL+N + I   K R+++ E+
Sbjct: 202 EQFTDFLALAGDASDNIPGAKGIGPKTAASLIGKYGSIASILLNLNEISP-KNRQSLEEF 260

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
               +L R+LV +RTD+ + + L++L     +  +++ FLK  E   +  R+   +    
Sbjct: 261 QPRLKLIRQLVTIRTDLDLHVSLQNLATTTPDVEKILPFLKQYELKSIAARLPAIFPEMN 320

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              E +  D    EN       E+    + K                             
Sbjct: 321 LQPESLPAD---NENNEKNDSPELTAPGSAK----------------------------- 348

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                  +   Y  +   +++Q  V++L    + +    T ++D F ++ + I++S   +
Sbjct: 349 -------DGADYRIVTRKEELQALVEQLNHAAALAVDTETTSLDTFQAELVGISLSIKPK 401

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +    +  +                     +  L  LK   EN    K G N+KYD LVL
Sbjct: 402 QAWFVYFGK----------------GGVDRRVALDMLKPVLENPSLRKTGQNLKYDLLVL 445

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            +YGI +     D ML SYVLD   + H++  +A + LS       E++   K  + I  
Sbjct: 446 KKYGIDINPVAFDTMLASYVLDP-EAKHNLDDLALRHLSIKTTTYDELVADGKKKMSILD 504

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQID 591
           +   ++ ++A +++++ L+L  + + KL+ EK LL + E ++ P++ V++ ME  GI ID
Sbjct: 505 VPPGELSDYACQDADLALRLQEVFKEKLLQEKDLLWLCENIEFPLVPVLATMEYHGISID 564

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D LK+    +SK +  L E I++ SG  FNL SPKQL  ILF  L  PSG  TKTG   
Sbjct: 565 TDHLKKTETTVSKQIGQLSEKIFEASGRVFNLDSPKQLAHILFDILGLPSGKATKTG--F 622

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T   + +     +P+ +++LE+R L K+++TY ++LP  IN  T ++HT ++   T TG
Sbjct: 623 STNVQVLEDLAPIHPVAQDLLEYRSLQKLRNTYIEALPKMINPLTGKLHTSFNQHVTATG 682

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIPI+T +G++IRRAFI   P   L+SADYSQIELR+ A I+    L + 
Sbjct: 683 RLSSSHPNLQNIPIRTLIGKEIRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLMEA 742

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N  DIH   A  IF  N  +++P+MRR AK +NF ++YGI PF L+ +L I R+EA +
Sbjct: 743 FRNREDIHSATARTIF--NTTEITPEMRRKAKEVNFGVLYGIMPFGLSRRLNISRNEAKN 800

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  Y  ++PGI   +++  +  ++ GYV T+ GRR +  ++NS   +++   ERAA+N 
Sbjct: 801 IIDTYTEKYPGIFNALQQIISDGKERGYVSTLLGRRRYIPDLNSRNKNMQKAAERAAMNT 860

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AM      L  HK+ + MLLQ+HDEL+FE PE E      ++   M  
Sbjct: 861 PIQGTAADIIKCAMNLCSTQLRLHKMKSVMLLQVHDELLFETPENEKHRLKTLVEEVMID 920

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A        VP++V+  +  NW E +
Sbjct: 921 AAKRCGLHNVPVEVDTGIGKNWLEAH 946


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/980 (34%), Positives = 506/980 (51%), Gaps = 108/980 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  E  + ++DG+S  +RA++A P LS    G+  NA+ GF NML K+L     +     
Sbjct: 1   MTSE-TMVIIDGNSLAHRAYHAIPPLSTSQ-GILTNAVYGFTNMLLKILAEEHPDR---- 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD   +TFR++ +  YKA+RP  P+ L PQ P+++   +A  I   E +G+EADD+
Sbjct: 55  IAVAFDKGKITFRHDDFEKYKAHRPATPDDLRPQFPVLKEVLKAMRIQVFEAEGYEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE+ G    I++ D+D +QLVSP T +    K     ++ D   V +++GI P
Sbjct: 115 IGTLSARAEQAGLRTIIVTGDRDALQLVSPLTSVRLVKKGISELDEYDEGMVWQRYGITP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +    + LTGD+ DNIPGIPGIG KTA+ LL+EYG+LE I+ +A  +  +   E +  Y
Sbjct: 175 RQYADFKGLTGDASDNIPGIPGIGEKTASRLLKEYGSLEEIIAHADELAGRT-GELVKTY 233

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A LS+KL  +  DVP+ I L     +  +   L+   K LEF  LI  +        
Sbjct: 234 KHQAELSKKLATIHRDVPVEIDLALCRWQGPDHKELLEIFKKLEFKSLIKSIY------- 286

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                             F        K   E   Q L    L+
Sbjct: 287 ----------------------------------FDRDEKTGVKKKEESARQALTRPNLE 312

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         I +   I+ +++     G  S  +  D          A + +   +
Sbjct: 313 VYQAAC------QPIDSPARIKSFIKAARKAGKVSLVLAGDG----RGGIAAASFALEGE 362

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               S                     +    +IL  LK   E+ +  K  HN K    +L
Sbjct: 363 STAYSL--------------------DGPPDKILEILKTICEDGNIKKYCHNGKETIRLL 402

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           HR GI++R    D M+ +Y+L+   S+ D+  I+ + L+     +L      +P      
Sbjct: 403 HRNGITLRQLAFDTMIAAYLLNPASSNQDLEDISLEHLN----AVLPGEDRKLP------ 452

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                     ++ I++L  LL  KL +     ++  ++ P+  ++++MEI G+ +D+  L
Sbjct: 453 --------AQAHCIMELAQLLDNKLKLYGQDRLFYEIEIPLAGILAEMEIEGVAVDKKQL 504

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +S E+ + +  L + IY L+G +FN++SPKQLG +LF  LK P   KTKTG + T A 
Sbjct: 505 EAMSEELGRQIEKLADEIYRLTGREFNINSPKQLGKVLFEDLKLPVIKKTKTG-YSTDAD 563

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    +  +  ILE+RQ++K+KSTYAD L   IN  T ++HT +    T TGRL+S
Sbjct: 564 VLEELAAA-HEAVAKILEYRQMAKLKSTYADGLAALINPETGKLHTTFHQTVTNTGRLSS 622

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIPI+ + G+ IR+ FI   P   L++ADYSQIELR+LAHI+    L + F+N 
Sbjct: 623 SDPNLQNIPIRLEAGRLIRKVFIPGRPENLLLTADYSQIELRVLAHISGDPALIKAFKNG 682

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AAEIF V  E+V+ +MR  AK +NF I+YG+S F LA  +++ R EA  YI+ 
Sbjct: 683 EDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVYGLSDFGLARDIKVSRQEARRYIEN 742

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+ G+ +YIE+     RQ GYV T+  RR +  ++ SP  +IR+  ER A+N PIQG
Sbjct: 743 YFARYAGVKDYIERIIREARQKGYVTTLLNRRRYLPDLFSPNRTIRSFGERTAMNTPIQG 802

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+++H+ L +H L  KM+LQ+HDEL+F+ P  EI     ++   ME A + 
Sbjct: 803 SAADIIKLAMVNIHRELAEHGLKAKMILQVHDELIFDAPAVEIDQLKDLVKRCMENALV- 861

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L VPL V IK   NW +
Sbjct: 862 ---LEVPLLVEIKAGRNWYD 878


>gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
 gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
          Length = 974

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/979 (31%), Positives = 503/979 (51%), Gaps = 109/979 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S +YRAF+A P L+   DG P NA+ GF  M+ +L+ + +     +H AV F
Sbjct: 95  KLVLIDGNSILYRAFFALPPLT-ARDGTPTNAVYGFTTMILRLMSDEK----PTHLAVAF 149

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+  +  YK  R + P+ L+ Q PL R   +A  IP IEI  +EADD+I T  
Sbjct: 150 DKSKTTFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMIEIDQYEADDVIGTLA 209

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKMV 180
             A + GF V ++S DKDL+QLV     +  T K     E  D + V +++ G+ P +++
Sbjct: 210 KRAAEAGFDVRVVSGDKDLLQLVDDRIHVLLTRKGITEMEHFDEQAVARRYPGLKPAQVI 269

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD  DNIPG+PG+G KTA  LL  +G +E +  +   ++ +K RE + ++ E A
Sbjct: 270 DLKGLMGDPSDNIPGVPGVGEKTALKLLTSFGTVEGVYDHLDEVQGQKLRERLEQHREDA 329

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS++L  +  D PI + LE L  E  +  R I++ + L+F  L++++            
Sbjct: 330 FLSKRLATIACDAPIEVDLETLRYEGPDPARAIAWFRELDFRSLVDKI------------ 377

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                             S++ S  ++   P     +   + S 
Sbjct: 378 ----------------------------------SEEMSHDSTPTPPPTAASDVSNEWSS 403

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           +     +Y  I +    Q+ +                  D   ++   +A++        
Sbjct: 404 F-----AYDVIEDAGAWQEAISSFNEPVGVMMDFA--DPDYHRAEIRGMAVAA------- 449

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++                    LS ++ +  ++   K+  ++K     L  +G
Sbjct: 450 --PKRAYYVRFGERLE-------------LSDVRPWLVSDR-PKVAFDLKSMAFALDAHG 493

Query: 481 ISMR---GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           I +    G++D+ L +Y+L+      +++ +  + L           +     D   D  
Sbjct: 494 IGLTSECGWQDVKLAAYLLNPQDGEVELSDVFAREL----------GQELPTFD---DGV 540

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            ++     ++ +  L+  L   + ++++  +Y+ ++ P+  V+++MEITG  ++++ L  
Sbjct: 541 REKWLAYTASQLPPLFESLAYTIRMQEMERLYQEVELPLAFVLAKMEITGFYVNREKLVA 600

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+++ +  + + IYDL+G  FNL+SPKQLG+ILF KL  P+  KTKTG   +T+ D+
Sbjct: 601 FGQELTERITRITQEIYDLAGTSFNLNSPKQLGEILFDKLGLPALKKTKTGY--STSADV 658

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +     + I++ IL++R L+K++STY + L   I K T RVHT +    T TGRL+S E
Sbjct: 659 LEKLAPMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVHTRFHQTLTATGRLSSSE 718

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+ + G+++RR F        + +ADYSQIELRILAH++    L   F   +D
Sbjct: 719 PNLQNIPIRLEEGRRLRRVFEPTYKDWVIFAADYSQIELRILAHLSGDEALIDAFRRDMD 778

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA++F V  E+V+  MRR AK +NF I+YGIS F LA  L IP+ EA  +I+ YF
Sbjct: 779 IHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNIPQKEAKRFIESYF 838

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            +FPG+  Y+++     R+ GYV T+  RR +  +I+S    +R+  ER A+N PIQGSA
Sbjct: 839 EKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERTAMNTPIQGSA 898

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ + +++ D ++  +MLLQ+HDEL+FE P +E+     ++  +ME A     
Sbjct: 899 ADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPNDELAALEVLVRDNMENAM---- 954

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L VPLKV+      W + 
Sbjct: 955 TLSVPLKVDTAYGPTWYDA 973


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/981 (32%), Positives = 513/981 (52%), Gaps = 94/981 (9%)

Query: 1   MQKE-NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  E   L+L+DGSS+IYRA++A   LS    G P NA+ GF  ML K++    K+   +
Sbjct: 1   MTTETETLYLLDGSSYIYRAYFAIRHLS-SPSGFPTNALYGFTQMLLKVM----KDRAPA 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AVIFD   +TFRNE++P YKA R  +PE L  Q+  ++   +AF IPA+E+ GFEADD
Sbjct: 56  HVAVIFDAGKITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFNIPALELPGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           II T     E +G A  +++ DKDLMQ+VS    L DT+KE+   I  V +K+G+ PE++
Sbjct: 116 IIGTIAKKCEAQGMACVVVTGDKDLMQIVSDRVTLLDTMKEKSFGIADVYEKFGVAPERV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V + AL GD+ DNIPG+PG                         I +   ++ + E+   
Sbjct: 176 VDVLALWGDASDNIPGVPG-------------------------IGEVTAKKLLQEFGSL 210

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             L   L                 ++  NG RL+ F         + R   T DC+   I
Sbjct: 211 DEL---LARAG------------EVKGKNGERLVEF----ADQARLCRTLATIDCNVP-I 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  V D   T      +         +   +                            S
Sbjct: 251 EYSVDDFAVTPPDNRRLAALFREYGFVTLLK-------------------------DLTS 285

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              ++ D Y+ ++  +++++ V +LE   + +  + T +++   ++ +  A+S    +  
Sbjct: 286 SPTLSCDRYSLVLTEEELRRVVAELEAAPAFAIDLETTSLNPREARVVGYAVSCRPHE-- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   +I +          +      +L  L    ++    KIG N+KYD  VL   
Sbjct: 344 ------ARYIPVGHRYL--GAPEQLPEALVLEILGPLLKDPARRKIGQNLKYDYQVLRMA 395

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
           G  M G   D ML +Y+++  R+S  + ++A ++L +      E+  S K  +   ++  
Sbjct: 396 GFEMEGIWCDTMLAAYLVNPARNSQGLDALALEYLDHRMISYAEVAGSGKCELNFSEVDL 455

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +   ++ E+++    L  +L PK+  + +  +   L+ P++ +++ ME+ G+++D DL+
Sbjct: 456 DRAGPYSCEDADATYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLM 515

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++SA   K L+ LE  I++  G  FN++SPKQLG++LF ++    G KTK     +T  
Sbjct: 516 KELSAGFGKQLIELEAQIHEHCGGPFNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNV 575

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           +  +    ++ + + +L++R +SK+KSTY D+LP  ++  T RVHT Y+ A T TGRL+S
Sbjct: 576 EELERLAEEHEVARLLLQYRSISKLKSTYTDALPKLVDPATGRVHTSYNQAVTSTGRLSS 635

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+ + G+ IRRAFI+ P   ++SADYSQIELR+LAH++    L + F    
Sbjct: 636 SDPNLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEAFAAGE 695

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  A+E+FG+  E V+ +MRR AK INF +IYG   F LA +L +   +A  +I  Y
Sbjct: 696 DIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKAFIDSY 755

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R  G   +++         G+V TI GRR+   EI S   ++R   +R A+N PIQGS
Sbjct: 756 FERHSGARSFLDSCIREAEVCGFVTTIMGRRLCIPEIASKNGNVRAFAQRNAVNYPIQGS 815

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V + ++  ++A+++++Q+HDELVFEVPE E     +++   ME A    
Sbjct: 816 AADIIKAAMLRVIRRMQQERVASRLIMQVHDELVFEVPEAERDLMEELVRTEMEGA---- 871

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           + L VPLKV++    NW E +
Sbjct: 872 LPLSVPLKVDLNFGLNWSEAH 892


>gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 886

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/980 (32%), Positives = 521/980 (53%), Gaps = 107/980 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S IYRAF+A P L+    GL  NA+ GF NML +L+Q  R     +H  V F
Sbjct: 3   KLILIDGNSIIYRAFFAMPPLTNSS-GLHTNAVYGFTNMLLRLIQEER----PTHMLVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D   VTFR+E Y +YK  R K P  L  Q PL+R   ++FGI   E+ G+EADDII T +
Sbjct: 58  DAGKVTFRHEGYQEYKGGRDKTPPELSEQFPLMRELLESFGIAWFELSGYEADDIIGTLS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE+ G  V +++ DKD++Q+VS    +  T K     E    + + +K+G+ P +++ 
Sbjct: 118 KRAEEAGHEVLVVTGDKDMLQVVSDRVKVALTRKGVSEVEPYGPQQIEEKYGLKPLQIID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD+ DNIPG+PGIG KTA  LL +YG++E +L +   +K  K +EN++ +AE AR
Sbjct: 178 LKGLMGDTSDNIPGVPGIGEKTALKLLHQYGSVEEVLAHTDELKG-KMKENLVNHAEDAR 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S++L  +  +VPI                     + ++F                    
Sbjct: 237 MSKQLATIFREVPIERSW-----------------EEMKF-------------------- 259

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQKLSQ 360
                      GI  ET +     ++  +F SL ++ S    E  T +    E++     
Sbjct: 260 ----------DGIPEETAVPM---LRKLEFKSLLERMSFAGGENATGEAARAEQVDIQVT 306

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               ++      +  +I+  +            + +   +   ++ + + +ST  +    
Sbjct: 307 TVDLDNLKELTADLPNIEGII------------VESHGENPHQAEMMGMVLSTASRHYFL 354

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           SF                    + L  E  + ++ +  +E   K G+++    LVL  +G
Sbjct: 355 SF--------------------DVLQSEAAAEVRAWLADEQVPKRGYDLHRADLVLFWHG 394

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           ++  G   D+ L +Y+LD   S   I+ +A K+         E+                
Sbjct: 395 VAFAGAEHDVQLAAYLLDPTESDQTISGLAAKYQLPQVPGDDEVYGKGAK---FKVPEPD 451

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            +  H    ++ +L++  L R  L   ++  ++  L+ P+  +++ ME  G+ ++++ LK
Sbjct: 452 VLSRHLARKADALLRILPLQREDLAKYEMEKLFYELEMPLSRILADMEKQGVAVNKEALK 511

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++  E    +  L   IY+++G++FN++S KQLG+ILF KL  P   KTKTG + T A+ 
Sbjct: 512 ELGVEFEAQINKLVARIYEIAGQEFNINSTKQLGEILFDKLGLPVIKKTKTG-YSTDAEV 570

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++    + I++ ILE+RQL+K++STY + L   I+ +T +VHT++      TGRL+S 
Sbjct: 571 LEKL-APYHEIVQFILEYRQLAKLQSTYVEGLLKEISPKTGKVHTYFRQTIAATGRLSSQ 629

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            PNLQNIPI+ + G+KIR+ F+       ++SADYSQIELR+LAHI+    L + F + +
Sbjct: 630 YPNLQNIPIRLEEGRKIRKVFVPSEEGWFILSADYSQIELRVLAHISGDPGLQEAFLHDM 689

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R EAA +I++Y
Sbjct: 690 DIHTKTAMDVFGVGPDQVDANMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAARFIEQY 749

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F+ F G+  Y+++     +++GYV+T+  RR +  EIN+   ++R+  ER A+N PIQG+
Sbjct: 750 FNAFQGVRRYMDEIVKAAKRDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGT 809

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ + + L  H L ++MLLQ+HDELVFEVP EE+   S+++  +M KA    
Sbjct: 810 AADIIKLAMVRMDEELHKHGLKSRMLLQVHDELVFEVPPEELEFMSKLVPETMGKA---- 865

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           + L VPLK  +    NW E 
Sbjct: 866 LELSVPLKAEVSSGLNWYEA 885


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/978 (31%), Positives = 504/978 (51%), Gaps = 74/978 (7%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DGS+F++RA+++         +G P  A+ G  N +  L    +++   +    IF
Sbjct: 5   LILMDGSAFLFRAYFSTLAQNLTNDEGFPTGAMFGVVNAVKHL----QRKYPNAKIIAIF 60

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R++IYP YKA+R      L+ Q+  +    +A G   + + G EADD+IAT +
Sbjct: 61  DAKGKNHRHDIYPKYKAHRKPADSELVMQIEPLYEIIRAMGFHFLCVPGVEADDVIATLS 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A++      I S DKDL QLVS      D ++    D + V++K G+ P++++   AL
Sbjct: 121 RCADQNKIKTIIASGDKDLYQLVSDNISQLD-MRGNLYDHDGVVEKMGVRPDQIMDFLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
           TGDS DNIPG+P +G KTA   LQ Y ++  +  N+++IK  K  E + +      +S +
Sbjct: 180 TGDSADNIPGVPSVGPKTAIKWLQAYNDVAGVKENSAQIKG-KVGEKLRDSFGLLDMSHQ 238

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L+ DV +   +        +  +L+S  K   F+  + ++  T   +  N EP   D
Sbjct: 239 LVELKFDVDLPCNILD-DEPGQDNIKLVSLYKRYGFSMWLKQLGNTAGTNTDNNEPPETD 297

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
           +   +N+          D   +                                      
Sbjct: 298 LVKEKNRDREENCSSWFDEYTQN------------------------------------- 320

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
                ++   D +  V++L+   S  F + T ++D  ++  +      L  KD     V 
Sbjct: 321 ----LVLEQTDFENLVERLKNSRSFVFDLETTSLDYMNAAIVGWVF--LVDKDSFYVPVG 374

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
             ++D           K     + L  LK   ++E   K+G N+KYD  VL  Y I + G
Sbjct: 375 HDYLDAP---------KQLDFDDALLTLKPILQDESINKVGQNLKYDAHVLANYQIDLNG 425

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
             +D M+ SYVL+S  + H++  ++  +L++      ++    K  I  +++       +
Sbjct: 426 ISDDTMVKSYVLNSVATRHNMDDLSMHYLNHQTIHFSDVAGKGKKQITFNQVGLEAAFPY 485

Query: 542 AIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E+  V  +L  +L   ++   KL+ +Y+ L+ P+I V+ +ME  G++ID  LL     
Sbjct: 486 ACEDVIVTHELNKVLDEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGLLNAQQL 545

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF--TKLKFPSGAKTKTGQWKTTAQDLE 658
           ++ K +  ++   ++L+G+ FNL SPKQ+  ILF    L   +  KT  G   T     E
Sbjct: 546 DVVKQMNEIQSQAFELAGDAFNLESPKQIQQILFSEEGLGLEAKKKTPKGAPSTNE---E 602

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +   D+P++  IL +R L+K+ STY ++LP  I+  T+R+HT Y  A T TGRL+S  P
Sbjct: 603 ALKLLDHPLVDLILSYRTLTKLNSTYLEALPKQIDLNTKRLHTSYHQAVTATGRLSSSNP 662

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+T+LG +IR AFI+     +I+ADYSQIELRI+AHI++   L + F N +D+H
Sbjct: 663 NLQNIPIRTELGARIRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSLIEAFNNDVDVH 722

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+ +F V IE+V+   RR+AK INF +IYG+S F LA Q+ + R+EA  YI  YF  
Sbjct: 723 SATASMMFNVPIEEVNKDHRRNAKAINFGLIYGMSAFGLAKQINVSRTEAKQYIDAYFEN 782

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y++  +   +  GYVETI GRR++  +IN+    ++    R AINAP+QGS+AD
Sbjct: 783 YPGVLNYMDNIREAAKVQGYVETIMGRRLYLPQINAKNKMLQQHALRTAINAPMQGSSAD 842

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AM+ VH+ + D     KM++Q+HDELVFEV   +    +  I   M  A      L
Sbjct: 843 IIKKAMLDVHEWIGDGNDEIKMIMQVHDELVFEVNASKADEFANKIQELMANA----YQL 898

Query: 959 RVPLKVNIKVSNNWQEEN 976
            +PL V++ + ++WQ+ +
Sbjct: 899 DIPLVVDVGIGDSWQQAH 916


>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
 gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
          Length = 984

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1010 (32%), Positives = 511/1010 (50%), Gaps = 82/1010 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+DG + IYRAF+A          G   +   G  + L +LL   + E      A 
Sbjct: 10  PRLFLIDGYALIYRAFFALLQRPLSTSRGENTSIAWGIASFLKRLLNTHQPEL----LAW 65

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP----LVRLATQAFGIPAIEIQGFEADD 119
           + D  A TFR+E+YPDYKA R K+ + L          V     A+ IP +   GFEADD
Sbjct: 66  VHDSGA-TFRDELYPDYKATREKLTDDLQADFDQGLQRVLQLLAAYDIPVLSAPGFEADD 124

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-------KIDIEHVIKKW 172
           +I T      + G+ V ++S DKD  QLV P   L +  +          + +E+   + 
Sbjct: 125 VIGTMAARGVEAGYNVVVVSGDKDFQQLVRPGVWLLNPGRGGPASVDESWVGVENGSDRL 184

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+PPE+++   A+ GD+ DN+PG+ GIG K A  L+ +YG LENIL N   I +K+ RE 
Sbjct: 185 GVPPERVIDYLAIVGDTSDNVPGVKGIGEKGAIELITQYGPLENILANVENITKKRPREA 244

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + +YA++ARLS++LV +  DVP+    E L +   N   L +    LEFT L+  V    
Sbjct: 245 LQQYADSARLSKQLVTIHCDVPVPFESEKLTVGQPNTDALRALYLELEFTSLLKDVGGA- 303

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                                      +   T+  T   S+ +D    +     P    +
Sbjct: 304 ---------------------------VPVATSSGTGATSTAADVAPALPVPGRPAAPAV 336

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD-------TMDAFHSK 405
             L +     + +  Y  +   + +   + ++  +   +    T         +DA  S+
Sbjct: 337 -TLGESGVPVLADARYVTVDTVEALATLLTRVREVPYIAIDTETVIEPGAPFDVDALRSR 395

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTS-------------------QDSTGKNTLT 446
            + ++I+     +           D S + +                    +        
Sbjct: 396 LVGLSIAVAPG-EAYYLPFAHRRDDGSGNLALLAGDTGTGIVGRRINAGAPEPVNLPPFD 454

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
            +  + L+   E+    KI  N KYD LVL   G+ + G   D ML SYVLD GR SH +
Sbjct: 455 SDACAPLRAMLEDPSVTKIAQNAKYDLLVLRSSGVRVAGVGFDTMLASYVLDPGRRSHGL 514

Query: 506 ASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +A + L +T      ++   K+ +P D       ++++ E+ ++ ++L   L P L  
Sbjct: 515 DLLALEQLGHTMTAYDTLVGKGKTQLPFDVAPVDTARDYSCEDVDITMRLRAKLEPMLAE 574

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
             LL +++ ++ P++ V+++ME  GI ID D    + A  +     +E+ IY  +GE+FN
Sbjct: 575 HALLSLFQEIEVPLVSVLAEMEWEGIAIDLDWFASLKARFAAERGRVEQAIYAEAGEEFN 634

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++S  +L  ILF KL  P   KT TG   T A  L+++    + +   ++E+R++ K++ 
Sbjct: 635 INSNPKLRAILFEKLGLPVKKKTATG-PSTDASVLQELAEEGHVLPTLLMEYREIFKLEG 693

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+LP  ++ R +R+HT YS   + TGRL+S +PNLQNIPI+ +LG+ IRR F+    
Sbjct: 694 TYIDALPRLVHPRDRRLHTSYSQTVSATGRLSSHDPNLQNIPIRRELGRDIRRGFVPREG 753

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            +L+SADYSQIELR+LAH++        F+   DIHR  AA IFGV +E V+ +MR  AK
Sbjct: 754 WRLLSADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARAK 813

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           TINF+ IYG     L+ QLRI  +EA  +I+ YF RF G+  ++++     R  GYVET+
Sbjct: 814 TINFATIYGQGAHALSRQLRITNAEAKAFIETYFERFAGVRGFLDQCVVDARARGYVETL 873

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           F RR +  E+     +IR   ER A NAPIQGSAAD+ + AMI+V  +++   LA++MLL
Sbjct: 874 FKRRRYIPELKERNFNIRAFGERVAQNAPIQGSAADLIKIAMINVRNAIDAEGLASRMLL 933

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           Q+HDELVFE+P EE  T S ++   ME A +    L VPL V + +  +W
Sbjct: 934 QVHDELVFELPVEEADTLSALVKREMEGAAV----LNVPLLVEMGLGTDW 979


>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
 gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
          Length = 930

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/989 (33%), Positives = 523/989 (52%), Gaps = 77/989 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+DG +  YRA +A          G   +AI GF   L +L+++       SH A+
Sbjct: 2   KSLFLLDGMALAYRAHFALIRSPIYTSKGFNTSAIFGFTGTLIELIKS----GNPSHLAI 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD  A T R+ I+P+YKANR ++PE L   +P +    +AF IP +++ G+EADDII T
Sbjct: 58  VFDTSAPTERHRIHPEYKANREEMPEDLRSAMPHLDRIAEAFDIPVLKLDGYEADDIIGT 117

Query: 124 YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-E 177
             + AE EGF  + +++ DKD  QLV+    +Y   ++    E + ++ V  KWGI   +
Sbjct: 118 LAHRAEAEGFDEIYMVTPDKDFGQLVTERIKMYRPGRKGDGAEILGVDEVKAKWGIARVD 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GDS+DNIPG+PGIG KTA  LL +Y  +E +L +   +K  K++E + + A
Sbjct: 178 QVIDMLGLCGDSVDNIPGVPGIGPKTAEKLLAKYDTVEGLLDHVDELKG-KQQEKVRDNA 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + AR+S+ L  ++ DVPI +    L L      +++      EF  L  R+         
Sbjct: 237 DQARMSKLLATIQKDVPIAVEWSALELHAPEQSKIVPLFTEFEFRTLGKRIFGN------ 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                +             S  D+ +   S +TP    L+ +  
Sbjct: 291 ---------------------DFSVQEAATDLVLMSEDDEQAAAASSETPAGGQLDLIPA 329

Query: 358 LSQYPINN--DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           ++   + +   +Y     T+ +Q+   +L   GS +F   T  ++   ++ + ++ +T  
Sbjct: 330 ITFKKLADVTHTYAIADTTEQLQRLCTELREAGSFAFDSETTALNPRQAELVGLSFATKA 389

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                       ++  S               E L  L+  F +    KIGHN+K+D  +
Sbjct: 390 HSG--------WWVPAS--------------SEALDALRPLFADNSITKIGHNLKFDLAI 427

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L      + G   D ML   +++     H++ ++A+ +L Y      E++   K   P+D
Sbjct: 428 LAAQSCPVDGPCYDTMLAHALIEP-EQRHNLDTLAEDYLRYSTIRFSELMPDAKKGSPLD 486

Query: 532 --KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +    + ++A E+++V LQLW   +PKL       ++  ++ P++ V+  ME  GI+
Sbjct: 487 YSSVDPQALADYATEDADVTLQLWECFKPKLEESGQASIFYEIETPLLPVLVAMESEGIR 546

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648
           +  + L++    +   + +L++ +Y  +G +FNL+SPKQLG++LF +LK      KTKTG
Sbjct: 547 LCTETLEETGRVLEGQIATLKDAVYAAAGREFNLNSPKQLGEVLFNELKLVDKPKKTKTG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           Q+ T  Q L  +    +PI+ ++LE+RQLSK+KSTY D+LPN ++  + RVHT Y    T
Sbjct: 607 QFATNEQVLSSL-APKHPIVADLLEYRQLSKLKSTYIDALPNAVDPVSGRVHTHYGQVQT 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP+++  G++IR+AF+      L++ADYSQIELRILA +     L 
Sbjct: 666 ATGRLSSNDPNLQNIPVRSAQGREIRKAFVPREGWTLLAADYSQIELRILAALTADEGLL 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-IPRSE 827
             F    DIH   AA+IF V+ + VS   R  AK +NF I YGIS F LA +L  + R+E
Sbjct: 726 TAFREGRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPYGISAFGLAQRLGTVSRTE 785

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A + I  YF +FPGI  Y++  +   R  GYV T+ GRR +  +INS   +IR   ER A
Sbjct: 786 AQNIIDNYFAQFPGIPGYMQAQQESARAKGYVATVCGRRRYLRDINSGNGTIRAAAERNA 845

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           IN PIQG+AAD+ + AMI VH ++ D  L ++MLLQ+HDEL+F++   E +   Q++   
Sbjct: 846 INMPIQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAPGEESALRQLVTGG 905

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M+ A    + L  P+++ I    NW E +
Sbjct: 906 MQDA----LQLACPIEIEIGTGMNWLEAH 930


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/979 (33%), Positives = 538/979 (54%), Gaps = 94/979 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++DG+S I RAFYA P L+ K +G   NAI GF  ML K++ +   +    + +V 
Sbjct: 4   KRMVIIDGNSLINRAFYALPPLTNK-EGQHTNAIYGFMTMLLKVMDDYDPQ----YISVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR++ +  YKA R K+P  L  QL  ++    AF I  +EI GFEADD+I T 
Sbjct: 59  FDRKAPTFRHKSFEGYKAGRKKMPPELAEQLEPLKEVLDAFHIYRVEIDGFEADDLIGTL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  AE++     I++ DKD +QL S    +  T K     E  D + +++++ + PE+ +
Sbjct: 119 SKYAEEQDIECLIVTGDKDALQLASEKVKILFTKKGISSLEIYDPQKIMEQYEVTPEQFI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPGIPG+G KTA  LL+++G +EN++ NA  I  +K RE +    E A
Sbjct: 179 DLKGLMGDNSDNIPGIPGVGEKTAIKLLKQFGTVENLIQNAGEISAQKLREKVENNTEQA 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S++L  + T+VP+ I LE L     +  ++++  K  EF  LI RV            
Sbjct: 239 MMSKRLATIMTNVPVEIELEKLKKIAIDEEKVLALFKKFEFNTLIGRV------------ 286

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                        IA + E+D +  +K  + ++   Q                       
Sbjct: 287 -------------IARKEEVDGEVVVKQEKMTNEIAQ----------------------- 310

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     I N  ++++   ++        +  T+  +      +AI  S   +K   
Sbjct: 311 ----------ITNIDELKKAFDEVRAGKQMILQTKTEEENIVLDHILAITFSVNGEK--- 357

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                     L     +D + K  L  +I    K+  E+E   KIGH+IK++    + + 
Sbjct: 358 ----------LYYIDVRDFSDKEALLIQI----KEVLEDEEIHKIGHDIKHEIRHFYVHD 403

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536
           I M+    D M+  Y++D  +SS+ +  +A +++     + +E+    K+ I I +    
Sbjct: 404 IEMKNVTFDTMIGEYLIDPAKSSYALKDLAAQYIGQEVMSEEELRGKGKNLISIGEAPKE 463

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            + ++  +  +VI +++  ++ K+   +L  +Y  ++ P+++V++ ME  GI++D+ +L+
Sbjct: 464 DLMKYLCQRVSVIGKIYPEIKAKMQELELEKLYYEVELPLVEVLAAMEYKGIKVDRSMLE 523

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +  E  + +  L + I++L+   FN++SPKQLG++LF KL+ P   KTKTG + T A+ 
Sbjct: 524 ILEIEFGEQIDLLTKAIHELAETNFNINSPKQLGEVLFEKLELPPIKKTKTG-YSTNAEV 582

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++    + II  ILE+RQ++K+KSTY D L N IN  T R+H+ ++   T TGR++S 
Sbjct: 583 LEKLQ-DQHDIIPKILEYRQVTKLKSTYVDGLLNIINPETGRIHSNFNQTVTTTGRISST 641

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPIK ++G+++R+ F++    + I ADYSQ+ELR+LAHI +   L   F  + D
Sbjct: 642 EPNLQNIPIKLEMGRRLRKVFVANENHQFIDADYSQVELRVLAHICEDENLLDAFLKNQD 701

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AAEIF V +E+V+  MR  AK +NF I+YGIS + L+  L I R +A  YI  Y 
Sbjct: 702 IHTRTAAEIFDVPMEEVTDSMRSSAKAVNFGIVYGISDYGLSQNLNITRVKAKKYIDNYL 761

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P +  Y+++      Q GYV T+F RR +  E+ S   +IR+  ER A+N PIQGSA
Sbjct: 762 DKYPSVKRYMDEIVEQAHQQGYVVTLFNRRRYLPELKSRNFNIRSFGERMAMNTPIQGSA 821

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM++V++ L++  L +K++LQ+HDEL+ E P+ E+  A +I+  SME+A     
Sbjct: 822 ADIIKIAMVNVYRRLKEQGLTSKLILQVHDELIVEAPDNEVEVAIKIVRESMEEAM---- 877

Query: 957 NLRVPLKVNIKVSNNWQEE 975
           NL+V LKV++  +NNW + 
Sbjct: 878 NLKVQLKVDLAYANNWYDA 896


>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
 gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
          Length = 892

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/981 (32%), Positives = 516/981 (52%), Gaps = 94/981 (9%)

Query: 1   MQKE-NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  E   L+L+DGSS+IYRA++A   LS   +G P NA+ GF  ML K++    K+   +
Sbjct: 1   MTTETETLYLLDGSSYIYRAYFAIRHLS-SPNGFPTNALYGFTQMLLKVM----KDRAPA 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AVIFD   +TFRNE++P YKA R  +PE L  Q+  ++   +AF IPA+E+ GFEADD
Sbjct: 56  HVAVIFDAGKITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFNIPALELPGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           II T     E +G A  +++ DKDLMQ+VS    L DT+KE+   I  V +K+G+ PE++
Sbjct: 116 IIGTIARKCEAQGMACVVVTGDKDLMQIVSDRVTLLDTMKEKSFGIAEVYEKFGVAPERV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V + AL GD+ DNIPG+PG                         I +   ++ + E+   
Sbjct: 176 VDVLALWGDASDNIPGVPG-------------------------IGEVTAKKLLQEFGSL 210

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             L   L                 ++  NG RL+ F         + R   T DC+   I
Sbjct: 211 DEL---LARAG------------EVKGKNGERLVEF----ADQARLCRTLATIDCNVP-I 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T                 +   F++L    +                   S
Sbjct: 251 EYSIDDFAVTPPDNR------RLAALFREYGFATLLKDLT-------------------S 285

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              ++ D Y+ ++  +++++   +LE   + +  + T +++   ++ +  A S    +  
Sbjct: 286 SPTLSCDRYSLVLTEEELRRVAAELEAAPAFAIDLETTSLNPREARVVGYAASCRPHE-- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   +I +          +      +L  L    ++    KIG N+KYD  VL   
Sbjct: 344 ------AWYIPVGHRYL--GAPEQLPESLVLEILGPLLKDPARRKIGQNLKYDYQVLRIA 395

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
           G  + G   D ML +Y+++  R+S  + ++A ++L +      E+ +S K  +   ++  
Sbjct: 396 GFELEGIWCDTMLAAYLVNPARNSQGLDALALEYLDHRMISYAEVARSGKCELNFSEVDL 455

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +   ++ E+++    L  +L PK+  + +  +   L+ P++ +++ ME+ G+++D DL+
Sbjct: 456 DRAGPYSCEDADATYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLM 515

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++S    K L+ LE  I++  G  FN++SPKQLG++LF ++    G KTK     +T  
Sbjct: 516 KELSTGFGKQLIELEAQIHEHCGGPFNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNV 575

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           +  +    ++ + + +L++R +SK+KSTY D+LP  +   T RVHT Y+ A T TGRL+S
Sbjct: 576 EELERLAEEHEVARLLLQYRSISKLKSTYTDALPKLVAPATGRVHTSYNQAVTSTGRLSS 635

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+ + G+ IRRAFI+ P   ++SADYSQIELR+LAH++    L + F    
Sbjct: 636 SDPNLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEAFAAGE 695

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  A+E+FG+  E V+ +MRR AK INF +IYG   F LA +L +   +A  +I  Y
Sbjct: 696 DIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKAFIDSY 755

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R  G   +++         G+V TI GRR+   EI S   ++R   +R A+N PIQGS
Sbjct: 756 FERHSGARSFLDSCIREAEVCGFVTTIMGRRLCIPEIASKNGNVRAFAQRNAVNYPIQGS 815

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V++ +++ ++A+++++Q+HDEL+FEVPE E     +++   ME A    
Sbjct: 816 AADIIKAAMLRVNRRMQEERVASRLIMQVHDELIFEVPEGERDLMEELVRTEMEAA---- 871

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           + L VPLKV++    NW E +
Sbjct: 872 LPLSVPLKVDLNFGLNWSEAH 892


>gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7]
 gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
          Length = 860

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/929 (33%), Positives = 486/929 (52%), Gaps = 78/929 (8%)

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +  A + A +FD    TFR++IYP YK NRP +PE L  Q   +  A  A G P + + G
Sbjct: 3   DYKADYAACVFDARGKTFRDDIYPLYKGNRPSMPEELAAQTEPIHRAVAALGWPVLAVPG 62

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
            EADDII T    A +EG    + + DKDL QLV+    L +T+  E+ DI+ VIKK+G+
Sbjct: 63  VEADDIIGTLARRAAQEGVHTVVSTGDKDLAQLVNEHVELVNTMSGERQDIDGVIKKFGV 122

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P+++V    LTGD++DNIPG+  +G KTAA  L +Y  ++ ++ NA  +K      N+ 
Sbjct: 123 TPDQIVDFLMLTGDTVDNIPGVEKVGPKTAAKWLAQYKTIDALVENADSVKG-VAGNNLR 181

Query: 235 EYAETARLSRKLVMLRTDVPITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                  ++R+LV ++TD  I      L  L     +   L++      F   +  +   
Sbjct: 182 AAIPNFDMTRQLVTIKTDCDIPELASGLSALTPTPVDRDVLVNLYNEYGFRSWLREL--- 238

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                                             ++++ P++  
Sbjct: 239 ------------------------------------------------TGDADRVPEQDS 250

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            +  +           Y  I +  D  +W++ + +    +    T ++D   ++ + +++
Sbjct: 251 RQPQEIPQAP--EQLDYQTINDWADFDRWLKIIASADLVALDTETTSLDPMQARLVGLSM 308

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S               +I ++      +       +E+L  L+ + E+    K+ HN KY
Sbjct: 309 SVEAGV--------ACYIPVAHRGPDHAP--QLPKQEVLDRLRPWLEDSKAHKLLHNAKY 358

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSS 527
           D  VL   G+++ G   D ML +YVL+S +   ++  +A++WL     T +++       
Sbjct: 359 DTHVLMNEGVALAGVAEDTMLQAYVLESHK-RVNMQELAERWLGRIGTTYEDLCGKGAKQ 417

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           I  D+I   +   +A E+++  LQL  +LRPK++ +  L    +L+      ++ +E  G
Sbjct: 418 IGFDEIDVDKASHYACEDADFTLQLHQVLRPKVLADPGLENIYQLEVQASATLAIIERNG 477

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + ID  LL   S E+ + LL  E   Y+L+G+ FNL+SPKQLG+ILF +++ P   KT +
Sbjct: 478 VAIDGKLLAAQSHELGQKLLEFEAKAYELAGQPFNLNSPKQLGEILFQRMQLPIVRKTPS 537

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G    T +D+      D P+   +LE+R L+K+KSTY D LP  IN RT RVHT Y+ A+
Sbjct: 538 GAPS-TDEDVLTKLAHDYPLPALLLEYRGLAKLKSTYTDKLPKMINPRTGRVHTRYAQAA 596

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRLAS +PNLQNIP++T  G+++R AF++   + ++SADYSQIELR++AH++    L
Sbjct: 597 VITGRLASSDPNLQNIPVRTPEGRRVRAAFVASGGQ-IVSADYSQIELRVMAHVSDDENL 655

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            Q FE   DIH+  AAE+FG    +VS + RR AK INF +IYG+  F LA+ L I R  
Sbjct: 656 RQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAINFGLIYGMGEFGLASNLGITRDA 715

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI RYF R+PG+  Y+E+TK    + GYVET+FGRR+   ++   K   R   ERAA
Sbjct: 716 ARAYIDRYFARYPGVAAYMEQTKRMANELGYVETVFGRRLWLPDLRGAKGPRRAAAERAA 775

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AAD+ + AM++V   LE   L T M++Q+HDELVFEVP +E+    + +   
Sbjct: 776 INAPMQGTAADLIKMAMVAVQDWLEAEGLKTLMVMQVHDELVFEVPADEVDIIKKHLPAL 835

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M         L VPL   + V  NW++ +
Sbjct: 836 MCNVA----QLSVPLVAEVGVGPNWEQAH 860


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/980 (31%), Positives = 519/980 (52%), Gaps = 58/980 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+D S  IYRA++A     R    G   +A+ GF N L ++++  + +    + AV
Sbjct: 8   KRLFLLDASMLIYRAYFAFIHTPRFDSKGNNTSALLGFANSLIEIIKKEKPD----YLAV 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    +FR+  Y  YKA R   PE +L   P V+   +A  IPAIE+  +EADD++ T
Sbjct: 64  IFDPEGGSFRHREYTAYKAQRDATPEGILWAFPQVKRLLEALRIPAIEVPDYEADDVVGT 123

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWG-IPPEKMV 180
            +  AEKEGF V +++ DKD  QLV+    +Y   T   E      V +K+G +   +MV
Sbjct: 124 LSQRAEKEGFEVYMVTADKDYGQLVTEHALMYRPGTKGAEVWGEAEVCEKFGLVHCSQMV 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD+ DNIPG  GIG K A+ LL ++G+++ I  +   +     ++ + E  E  
Sbjct: 184 DYLALVGDASDNIPGCKGIGPKKASELLTQFGSIDAIYEHLDELSPS-LKKKLEEGRENT 242

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR L  + T+VP+ +  E     + N P+L + L   E   L  R+            
Sbjct: 243 LLSRYLAKICTEVPMEVEWETFRHLEPNVPQLRALLAEFEMHTLAKRLLP---------- 292

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                     N+G A +      ++  TSQ      + S+ NS  +P++     LQ L+ 
Sbjct: 293 ----------NEGEAADWGGGLFSSSSTSQDE--GKEPSEANSLFSPER--TASLQGLTT 338

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +Y  +   ++ +Q   +L      +F   TD ++   +  +  + +  + +   
Sbjct: 339 LKDTAHTYHVVRTKEEQKQLWARLAESKQFAFDTETDGLNPLTASIVVASFAPEEGE--- 395

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ L     +           IL  L     N   LK+  N K+D+ +L RYG
Sbjct: 396 -----AYYLPLPQDFDEACA--------ILQPLDALMRNSEILKMAQNAKFDQKLLARYG 442

Query: 481 ISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI--LKSRKSSIPIDKISDSQ 537
           +S      D ++  Y++   +  H++ ++A+++L Y       L  +K+      +++  
Sbjct: 443 VSSATPLFDTLVAHYLIAPDQ-RHNLDTLAEQYLGYRTIAYSDLSEKKNFDLRRDVAEEL 501

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           + ++A E+++V+ +L+ LLR KL  E+   ++  ++ P++ V+ +ME  G+Q+D   L +
Sbjct: 502 LVDYAAEDADVVRRLYPLLREKLEQEQQEKLFWEVEMPLVGVLERMEREGVQLDVQRLHE 561

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           VS +++ +L   E+ I+  +G  FN+SSPKQ+G +LF +L   +  K       +T++++
Sbjct: 562 VSEKLTNDLRETEDAIFHWAGHSFNVSSPKQVGVVLFEELGLHAKGKKTKTNTYSTSEEV 621

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                  +PI++ IL++R L K+  TY ++LP  +     R+ T Y+ A T+TGRL+S +
Sbjct: 622 LSKCVDQHPIVQKILDYRGLKKLIGTYTEALPELVYPDG-RLRTSYNQAVTVTGRLSSSD 680

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI++ +GQ+IR AF+   ++   +SADYSQIELR++AH ++   L + F    D
Sbjct: 681 PNLQNIPIRSAMGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLIKAFVEGED 740

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +HR  AA I+ V  E+V+P  R HAKT NF IIYGIS + L+ +L I  SEA+  I  YF
Sbjct: 741 VHRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYGISAYGLSQRLNIDPSEASSLISSYF 800

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P +  Y+++     R+ GY ET+ GRR +  +INS  +++R   ER A+NAPIQG+A
Sbjct: 801 ENYPAVRAYMDECVQKARKLGYTETLLGRRRYLPDINSRSATVRQFAERNAVNAPIQGTA 860

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI +   + +  + ++M++Q+HDEL F+    E+     ++   M +A     
Sbjct: 861 ADLIKVAMIRIDAKMRERNMKSRMIMQVHDELNFDAYLPEVDELRALVHQEMCQAIP--- 917

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
           NLRVPL+V I V ++W E +
Sbjct: 918 NLRVPLEVEIGVGSSWLEAH 937


>gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
          Length = 944

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/987 (33%), Positives = 515/987 (52%), Gaps = 79/987 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            K+  LFL+DG + +YR+FYA         +G+P  AI GF + L K+ +  R +    +
Sbjct: 25  TKKPALFLLDGMAIVYRSFYALQRTGMTSQEGMPTGAIYGFASTLLKIFETYRPQ----Y 80

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A +FD    TFR+++YP YKANR   PE L+ QL  +    +AF IP I+  G+EADD+
Sbjct: 81  LAAVFDSKEKTFRHDLYPLYKANRQAPPEDLIMQLDAIFKLLEAFDIPLIKTPGYEADDL 140

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +         V I++ DKDL QLV     +    K     E +  + +I+++G+PP
Sbjct: 141 IGTASRKFSPM-CQVYIVTPDKDLAQLVHEGVNILKPGKNQNELELLGKKEIIEQFGVPP 199

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E  +    LTGD+ DNIPG  GIG KTA  LL +YG+L+NI  +   I   K R+++  +
Sbjct: 200 ELFIPFLTLTGDTSDNIPGAKGIGPKTAISLLDQYGSLQNIYNHLDTISP-KNRQSLEAF 258

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             T  L  +LV +RTD+ I + L+ L     +  +L   L+ L    + +R+   +    
Sbjct: 259 QPTLDLITQLVTIRTDLQIDVTLKELACGLPDPAKLFPLLQKLGLKTISSRILALFG--- 315

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                     +     S  + L ++ S    E+ P         
Sbjct: 316 --------------------------ELQQAPSATAPLHEEPSSPFHEEEPAL------- 342

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              + P  N  Y +I     + + ++ L      +    T ++D F ++   I+I+    
Sbjct: 343 ---RSPRENADYARIDTVDKLMELMESLHDARHIAVDTETTSLDTFEAELAGISIAVETG 399

Query: 417 KDDT-SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           K    SF    +  D                 + +  LK   EN    KIG N+KYD LV
Sbjct: 400 KARFISFAQSALDRD-----------------KTVEILKPLLENPSLPKIGQNLKYDMLV 442

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
           L +YGI +     D ML SYVL+     H++  +A   L Y      E++ + K+   I 
Sbjct: 443 LKKYGIELSPVAFDTMLASYVLNP-EEKHNLDDLAAHHLGYRTTTFDELVGTGKTKQHIF 501

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           ++   ++ ++A +++++ LQL  + R KL  E +LL + E ++ P++ V+++ME  GI I
Sbjct: 502 EVDPEKLSDYACQDADLALQLEGVFRKKLDGETELLWLCENIEFPLVTVLAEMEYAGICI 561

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L++ S  + K L  L E IY  +G  FN+ SPKQL  ILF  L  P   +TKTG +
Sbjct: 562 DTHHLEKASERVKKELELLTETIYAAAGSAFNIDSPKQLAHILFDLLALPPKKRTKTG-Y 620

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++     PI +++LE+R L K+KSTY D+LP  +N  T R+HT ++   T T
Sbjct: 621 STNVEVLEEL-ATLFPIARDLLEYRSLQKLKSTYIDALPKMVNPLTGRLHTTFNQFITAT 679

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIPI++ LG++IRRAFI   P   L+SADYSQIELRI A I+    L +
Sbjct: 680 GRLSSSNPNLQNIPIRSPLGKEIRRAFIPSTPENWLLSADYSQIELRIAAEISGDPQLLE 739

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N  DIH   A  IF  + ++++  MRR AK +NF ++YGI PF L+ +L IP+ EA 
Sbjct: 740 AFRNREDIHTATAKVIF--DTDEITSDMRRKAKEVNFGVLYGIMPFGLSRRLNIPQKEAK 797

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I  Y  ++PG+ + +++     R+ GYV TI GRR +  ++NS  ++++   ERAA+N
Sbjct: 798 AIIDTYISKYPGLFKALQEIIVTGREKGYVTTILGRRRYLADLNSRNTNLKKAAERAAMN 857

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AADI + AM      +    + + MLLQ+HDEL+FE  + E    S+++  +M 
Sbjct: 858 TPIQGTAADIIKCAMNLCSSRMRHLNMKSVMLLQVHDELLFETTDAEKEPLSKLVEQAMI 917

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A +      VP+ V+  +  NW E +
Sbjct: 918 DAAIRCGLKNVPVLVDTGIGKNWLEAH 944


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/988 (33%), Positives = 508/988 (51%), Gaps = 49/988 (4%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
           M +  ++ L+L+D    IYR+++A     L+ K  G  V+A+ GF   L  +L+  R   
Sbjct: 1   MTQHTQDTLYLLDSYGLIYRSYFAFISHPLTNKA-GENVSALYGFFRSLAMILKTYRPR- 58

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              +F   FD    TFR+E Y +YKA R K PE L  Q+P +     A GI  +   GFE
Sbjct: 59  ---YFLAAFDSRTPTFRHEWYSEYKATRDKTPEDLHAQIPHIEKILTALGIACLRKDGFE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWG 173
           ADDIIAT    + +EG    IIS DKDL QLV     +    K E +    +E V   WG
Sbjct: 116 ADDIIATLARRSAQEGRRCVIISGDKDLAQLVGDFVSVLKPDKSEALAQCGVEEVKAHWG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P +M+   +L GDS DNIPG+ GIG KTA  LLQ+YG L+ +  +   I     ++ +
Sbjct: 176 VAPAQMLDYLSLIGDSADNIPGVKGIGPKTAVKLLQDYGTLDAVYEHIDSIAGA-VQKKL 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               ++A  S+KL+ L  +VPI   L+       +     + LK  E    + R+   Y 
Sbjct: 235 AAGKDSAYFSKKLITLADNVPIEGTLDDYRCTALHYAETAALLKEYE----LPRLGELYA 290

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
             A   E      +  E    A + +++  T  KT   ++  D  +K  +    Q     
Sbjct: 291 KAAGESETA---GSAAEQNTAAGKADVNTATAGKTGATTAADDIGTKPANSAAAQP---- 343

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                ++   N+  Y  + + K+++  + + E  G A+F   T  ++  +   +  ++S 
Sbjct: 344 -----AELRKNDGEYRTVTDAKELEAVIAEAEAQGFAAFDCETTGLNPLYDSLVGFSLSL 398

Query: 414 LDQKDDTSFKVETIFIDL--SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                        I++ L        +              L + + N+    + HN K+
Sbjct: 399 KAGTG--------IYVPLKAPAPELGEQPFAVMPLAAAKKLLARLWNNKELTLVLHNGKF 450

Query: 472 DKLVLHRYGISMRG---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           D  VL   G+  R      D M+ +++L+    S  + ++ +  L     +         
Sbjct: 451 DYQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSFGLENLTEAQLGLQGLDYKDVVPKGC 510

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
               +S  Q   +A E+++  LQL+ + +P L    L  ++E L+ P++ +++ ME  GI
Sbjct: 511 TFAAVSLPQATAYAAEDADFTLQLYHVYKPALEQANLTTLFETLEMPLMPLLADMEAQGI 570

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            + ++ L   S E++  L   E  IY L G  FN++SPKQL ++LFT+ K P+G KTKTG
Sbjct: 571 FLKKEELAAFSEELAGTLARDEAEIYKLVGHPFNIASPKQLQEVLFTERKLPTGKKTKTG 630

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T    LE++   D  +   IL++R  +K+KS YAD+LP   +    R+HT +    T
Sbjct: 631 -YSTDISVLEELAAID-ELPAKILDYRASAKLKSGYADALPLLADA-NGRIHTSFIQTGT 687

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIPI+ + G+KIR+AF +    KLISADY+QIEL ILAH ++   L 
Sbjct: 688 ATGRLSSRDPNLQNIPIRGEEGRKIRKAFYAADGCKLISADYAQIELVILAHFSQDENLV 747

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    D+H   AA IF V +E V P MRR AK INF ++YG+S FRLA QLRI R+EA
Sbjct: 748 KAFRQGTDVHAATAALIFNVPVENVVPDMRRIAKVINFGVMYGMSAFRLANQLRISRTEA 807

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           AD+I RYF  + G+  ++E  K    + G+VET+ GRR +   INS   + R   ER AI
Sbjct: 808 ADFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGRRRYIRAINSRNQTQRAAAERIAI 867

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AM+ V ++L+   L+  +LLQ+HDEL+ E P+ E+ +   ++   M
Sbjct: 868 NTPIQGSAADIVKTAMLHVDRALKRQHLSAHLLLQVHDELILEAPDSEVDSVKALLKQEM 927

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E      + L VPL+V+I+  + W + +
Sbjct: 928 EHV----VKLAVPLRVSIESGSCWGDFH 951


>gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
 gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
          Length = 928

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/985 (32%), Positives = 506/985 (51%), Gaps = 77/985 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            L LVDG S  YR+FYA         R   G+P +   GF   L ++L+        +H 
Sbjct: 7   TLLLVDGHSLAYRSFYAFAHSREGGLRTSTGIPTSVSFGFLKSLLEVLEK----YPPTHI 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    TFR+E    YKA RP+ P   +  +  ++    A  IP + + GFEADD++
Sbjct: 63  AVAFDTRQPTFRHEADETYKAGRPETPPEFVEDVENLQQVLAALRIPILAVPGFEADDVL 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKEE--KIDIEHVIKKWGIPP 176
            T   +A +E + V I+S D+DL QL+ P      L+   K+   +   + V +K GI P
Sbjct: 123 GTLCRLAPQE-YRVQILSGDQDLFQLIDPEGRIRVLHLNSKDRVSEFGPQEVKEKLGIWP 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++V  +AL GD  DNIPG+ GIG K AA LLQ YG+LE I  +   I   K ++ + E 
Sbjct: 182 WQVVDYKALCGDPSDNIPGVKGIGPKRAAELLQRYGSLEEIFNHLGEIPG-KIQQYLREG 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A+ S+ L  +  DVP++   E + L   +   ++  L+ LEF   I +V        
Sbjct: 241 IPAAQHSQFLARIHCDVPLSPDWESMRLTGFDPEEVLPLLEKLEFRSFIAQVRKLQAT-L 299

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             I        TT   G   +  +  D                                 
Sbjct: 300 GGIPAQASQARTTSKDGSTYDEALWFD--------------------------------- 326

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQK--LETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                P  +     IV+T +  + +++  L   G  ++   T ++D   ++ + I     
Sbjct: 327 -FPAAPAPSLPAVCIVDTAEKLELLRQELLACSGIVAWDTETTSLDPRDAQLVGIGCCWS 385

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           ++        +  ++ L         G N     +   L+  +E+ +  K   N KYD  
Sbjct: 386 ER--------DVAYLPLGHRQ-----GSNLDWDLVKQSLQPIWEDPNRPKSLQNCKYDLS 432

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +   + I ++G   D ML SYVL+   +SH++A +A  +L+       K    +  +  +
Sbjct: 433 IFRAHSIRLQGIQFDPMLASYVLNP-EASHNLADLAASYLNLPTTSYEKLLGKAESLADL 491

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQID 591
             ++V E+   ++    +L  +L  KL     +L +++ +++ P+  V+ +ME  GI+ID
Sbjct: 492 PIAKVAEYCGTDAYCAYRLVPILTEKLQQTDPRLWNLFVQVELPLAHVLEEMEWVGIRID 551

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + L+Q S E+ K L SLE+  Y  +GE FNL+SPKQLG +LF KLK       KT    
Sbjct: 552 TEFLRQFSQELEKELHSLEQKAYAQAGEVFNLNSPKQLGSLLFEKLKLDVRKTRKTATGY 611

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T   + +   GD+P+I+ IL++R L+K+KSTY D+LP  + + T RVHT ++   T TG
Sbjct: 612 STDASVLEKLEGDHPVIETILQYRTLAKLKSTYVDALPALVRRDTGRVHTSFNQTVTATG 671

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S  PNLQNIPI+++  ++IR+AF+      L SADYSQIELRILAH+++   L + F
Sbjct: 672 RLSSSNPNLQNIPIRSEFSRRIRQAFVPQEGWLLASADYSQIELRILAHLSQEPTLIECF 731

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  D+H + A  +F    ++V+ + RR AKTIN+ +IYG+   R A    +  +EA ++
Sbjct: 732 RSGEDVHTLTARLLF--EKQEVTSEERRLAKTINYGVIYGMGAQRFARTAGVSLAEAKEF 789

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           ++R+  R+ G+  Y+  T+ FV ++GYVET+ GRR ++  ++      +    RAA+NAP
Sbjct: 790 LRRFNERYAGVFAYLRATEAFVEKHGYVETLLGRRRYFPNLSQLSGHRKQAELRAAVNAP 849

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSA+DI + AM+ + + L+     +++LLQ+HDELVFEV   E      +I   ME+A
Sbjct: 850 IQGSASDIIKVAMVRLQEKLQ--NFRSRLLLQVHDELVFEVEPSEWQDLRPLIQREMEEA 907

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L +PL V+I++ +NW+E N
Sbjct: 908 ----VPLSIPLVVDIQIGHNWKEAN 928


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/977 (33%), Positives = 512/977 (52%), Gaps = 106/977 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + ++DG+S I+RAF+A PLLS    G+  NA+ GF NM+ K+++           AV 
Sbjct: 4   DTIIIIDGNSLIHRAFHAIPLLSNSK-GVITNAVYGFTNMVLKVIKEQEPGL----VAVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRN+ Y  YK  R   P+ L PQ  L R    A  IP  E+ GFEADD+I T 
Sbjct: 59  FDKGKTTFRNQEYAAYKGTRKATPDELRPQFILARDILGAMRIPFFELDGFEADDLIGTI 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              AE  G  V I++ D+D +QLVSP T +  T K     +  D   V  K+G+ P ++V
Sbjct: 119 ACQAEATGLNVLILTGDRDALQLVSPKTKVMLTRKGITEIDLFDEGKVWDKYGVTPSQVV 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPG+ GIG KTA++L++EYG++E IL N  ++   + ++ +    E A
Sbjct: 179 DLKGLQGDTSDNIPGVAGIGEKTASVLIKEYGSVEEILKNIDKLSP-RHQKLLRGNEEIA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS+KL  +  DVP+ + L        +  +L+   K LEF  LI ++            
Sbjct: 238 LLSKKLATIIRDVPMELDLSECSWHGPDNQKLLEIAKELEFKTLIKQL------------ 285

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                    IK SQ S  S     + + Q               
Sbjct: 286 -------------------TSGQKFIKQSQDSGTSADLPPLETYQV-------------- 312

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + +   + + + ++   G  +  +          +   I  + L  +D  
Sbjct: 313 ------GYLNVTDQDALDELLIEVSRQGKVAIYLE-------GLRNQGIDTAYLAMED-- 357

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                     L++        K++ +   L+ LK   E E   K  H+ K    +LH + 
Sbjct: 358 -----HDIYRLAIQN------KDSDSDPCLTVLKAICECESVKKYFHDAKQALWMLHHHS 406

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I ++    D M+ +Y+L+   S++DI  +A + L                   +  ++ +
Sbjct: 407 IELKALAADTMVSAYLLNPTASNYDINDVALEHLGM-----------------VLPAEGE 449

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
                 +  I +L   L  KL   +   +  +++ P++ ++S+MEI G+ +D+  L+ +S
Sbjct: 450 TAMASRAEAIRRLAQKLFEKLAERQEDRLLTQVELPLVRILSEMEIAGVAVDKQGLQDMS 509

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+     +L   I++L+GE FN++SPKQLG ILF KLK P   KTKTG + T A+ LE+
Sbjct: 510 VELQTVTETLTTKIHELAGENFNINSPKQLGPILFEKLKLPVLKKTKTG-YSTDAEVLEK 568

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ I+  ILE+RQ++K+KSTY D L   ++ +T R+H+ +    T TGRL+S EPN
Sbjct: 569 L-AEEHEIVALILEYRQMAKLKSTYTDGLAALVDPQTGRLHSTFHQTVTATGRLSSAEPN 627

Query: 720 LQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+ FI       +++ADYSQIELR+LAH+++       F    DIH
Sbjct: 628 LQNIPIRLETGRKIRKVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAFRQGQDIH 687

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+FGV +++V+ +MR  AK +NF I+YGIS F LA  L++ R EA  YI  YF R
Sbjct: 688 TRTASEVFGVPMDQVTSEMRSRAKAVNFGIVYGISDFGLARDLKVSRKEAQGYIDHYFAR 747

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            PG+ +YI++     ++ GYV T+  RR +  E+ S   +IRN  ERAA+N PIQG+AAD
Sbjct: 748 CPGVRQYIDRVIKEAKETGYVNTLLNRRRYLPELFSKNFNIRNFGERAAMNTPIQGTAAD 807

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ + + L++  L+++M+LQ+HDEL+F+ PE EI +   ++  SME A    + L
Sbjct: 808 IIKLAMVKISQQLKEQNLSSQMVLQVHDELIFDAPENEIESLIMLVRQSMENA----LQL 863

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPL V+IK+  NW E 
Sbjct: 864 DVPLVVDIKLGPNWYEA 880


>gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
 gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
          Length = 931

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/986 (33%), Positives = 519/986 (52%), Gaps = 76/986 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +++  +FL+DG + ++R++YA      +   G P  AI GF N + K+ +  R +     
Sbjct: 11  RQKPSMFLLDGMALVFRSYYALMSARMQTQSGFPTGAIYGFINTILKIEETYRPDF---- 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E +PDYKA RP  P  L+ QL  +     A GIP ++  GFEADDI
Sbjct: 67  LVVAFDSKEKTFRHEAFPDYKAQRPAPPTDLIQQLGKILEIVPAMGIPMLKRPGFEADDI 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           I T T   E     + +++ DKD  QLV     L    ++         E V   +G+ P
Sbjct: 127 IGTLTKKFEDR-CNLFLVTPDKDFAQLVHDGVKLLKPARQNDEFLLYGAEEVKSHYGVYP 185

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+ + + AL GDS DNIPG PGIG KTAA L+  YG++  I  N   ++  + RE++L+ 
Sbjct: 186 EQFLDMLALMGDSSDNIPGAPGIGPKTAANLINRYGSIAKIYENLYELRP-RARESLLKS 244

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                  R L+ ++TD+ I + L+ L  +  +   L+   + LEF  L  R  ++ +   
Sbjct: 245 KAALENGRFLMTIKTDMDIDLTLDDLKQKSPDLDFLLPLFEELEFRTLAARFKSSPEK-- 302

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                         K  Q +S +D      +   P   F ++  
Sbjct: 303 ------------------------------KNEQAASDADLEFNFGANVDPNFQFAKKQP 332

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +      +  +YT I +  D+ Q  +KL ++   +F   T ++    ++ + I+ S    
Sbjct: 333 R------DLGNYTLIQDEDDLNQLAEKLGSLKEFAFDTETTSLTTLDAELVGISFSFAPG 386

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +   +F V      LS              +  +  LK   EN    KIG N+KYD LVL
Sbjct: 387 E---AFFVYCAESALS-------------RETAIRVLKPILENPEIGKIGQNLKYDMLVL 430

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
             YG+ ++    D ML SYVL+  ++ H++  +A   L        +++   KS   I +
Sbjct: 431 KNYGVRVQPVRFDTMLASYVLNPDKT-HNLDDLAADHLGLETVKYADLVGKGKSEKSIYE 489

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +    + ++A ++++V LQL  +L   L   E L  + E L+ P++ V++ ME  G+++D
Sbjct: 490 VEPKTLSDYACQDADVALQLKNVLEKALGENEPLKKICEELEFPLVGVLADMEHEGVRLD 549

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +LK +S  +   L  + + IYD +GE FNL SPKQL +ILF KLK P+  +TKTG + 
Sbjct: 550 VAVLKTLSETLGTELGRVSKIIYDAAGEAFNLDSPKQLSEILFEKLKLPAKRRTKTG-YS 608

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + LE++     P+ K ILE+R L K+KSTY D+LPN ++ +T R+HT ++     TG
Sbjct: 609 TDVRVLEEL-AESFPVAKQILEYRSLQKLKSTYVDALPNLVHPKTGRIHTSFNQHIAATG 667

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIPI+T++G++IR AF+       L+SADYSQIELRI A ++    +   
Sbjct: 668 RLSSSNPNLQNIPIRTEIGREIRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPTMLGA 727

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N  DIH   A  IF    ++V+  MRR AK +NF ++YGI PF LA +L I ++EA +
Sbjct: 728 FQNREDIHSTTAKLIF--ETDEVTKDMRRKAKEVNFGVLYGIMPFGLAQRLDISQAEAKE 785

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I +Y  ++P I  Y+E   +  R +GYVET+ GRR +  ++NS   SIR+  ERAAIN 
Sbjct: 786 IISQYKEKYPMIFSYLEGILDKARASGYVETLLGRRRYIRDLNSKNFSIRSAAERAAINT 845

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AAD+ ++AM+ +   +    L ++M+LQ+HDEL+F + E E+    +++   M +
Sbjct: 846 PIQGTAADMIKKAMLGIASDIHKQSLRSRMILQVHDELLFNMHESEVDILPELVQREMIE 905

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A        VP++V +    NW E +
Sbjct: 906 AAKAIGIRNVPIEVEVGTGANWIEAH 931


>gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
 gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
          Length = 897

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/985 (31%), Positives = 508/985 (51%), Gaps = 104/985 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATP--LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           K   L ++DG+S + RAFY      L    DGL  NA+ GF N++ K ++    +    +
Sbjct: 2   KRQKLMVIDGNSILNRAFYGLQGTNLLATSDGLYTNAVFGFINIMNKYIEEENPQ----Y 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A TFR++ +  YKANR  +P+ L  Q+P+++    A  I  +E++GFEADDI
Sbjct: 58  ICVAFDLKAPTFRHKQFDGYKANRKGMPDELRVQVPVIKEVLDAMCIKRLEMEGFEADDI 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGI 174
           + + +  A+++   V II+ D+D +QL    T +     +      E+ D   + +K+ I
Sbjct: 118 LGSISLCAQEKDIDVIIITGDRDALQLAGKGTRIKIPKTKGGKTETEEYDYNTIREKYSI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ DNIPG+PG+G KTA  L++ Y +LEN+  N  +I +K  +E + 
Sbjct: 178 DPVQFIDVKALMGDTSDNIPGVPGVGEKTALDLIKTYNSLENLYDNLEQITKKGLKEKLE 237

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
            Y E A +S+ L  +  ++P     + L+  + + P+L    + L               
Sbjct: 238 TYKEQAFMSKNLAAIDRNMPFLCHFDELVRNEFDKPKLYELFRRL--------------- 282

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                              +F S  D+    +S+     + +E 
Sbjct: 283 -----------------------------------EFKSFIDKFGLRDSQPCHNCIAIET 307

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                           I + + +    QK+      +F  + D +D F +K   + +S  
Sbjct: 308 --------------EIIDDGQGVMDLKQKIHEAKEVAFYYLIDRIDKFTNKLAGLCVSIK 353

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +                       +  +     E L   K  FE+    K GH++K   +
Sbjct: 354 EGSSYFL-----------------NINERLTENEFLEGFKSIFEDGEIKKYGHDLKNFIV 396

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
            L + GI + G   D M+ +Y+++  R ++ I+ +A  +L+      +E+    KS +P 
Sbjct: 397 YLKQNGIELNGVAFDTMIGAYIINPSRETYTISELAADFLNTNVKPIEEMAGKGKSFLPF 456

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +   +++        +I +    +  KL     L++Y +++ P++ V++ ME  G +I
Sbjct: 457 GSMDVEELKNVVGLYPEIIYKAMKKIDDKLNENDQLNLYYKIELPLVRVLADMEFYGFKI 516

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           + + L  +S ++ + +  L   IY+L+GE+FN++SPKQLG +LF KL+ P   KTKTG +
Sbjct: 517 NINELTVISRQLDEKINQLTLKIYELAGEEFNINSPKQLGVVLFEKLELPIIKKTKTG-Y 575

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A+ LE++    + I+ NILE+RQL K+KSTY + L   IN  T ++H+ ++   T+T
Sbjct: 576 STDAEVLEEL-AEKHEIVSNILEYRQLVKLKSTYIEGLMAVINPHTGKIHSSFNQTVTVT 634

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQ 769
           GR++S EPNLQNIPIK ++G+ IR+AF+      KL+ ADYSQIELR+LAHI     +  
Sbjct: 635 GRISSTEPNLQNIPIKLEMGRNIRKAFVPCDGNYKLVDADYSQIELRVLAHITDDENMIG 694

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N+ DIH   A+++FGV  E+V+  +R  AK +NF I+YGI  F L+  L I R EA 
Sbjct: 695 AFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAVNFGIVYGIGDFSLSKDLGITRKEAR 754

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +YI  Y  ++  + +Y+       ++ G+V T+F RR +  E+ +   ++R+  ER A+N
Sbjct: 755 NYIDGYLDKYANVRKYMHDIVAQGKEFGFVTTMFNRRRYLPELKASNFNVRSFGERIAMN 814

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQGSAADI + AM+ VH  L   +L ++++LQ+HDEL+ E  E E+   + I+  SME
Sbjct: 815 TPIQGSAADIIKIAMVMVHSELNRRQLKSRLILQVHDELIIEAHESELEEVTMILKESME 874

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A      L+VPL V++K  N+W E
Sbjct: 875 NATA----LKVPLSVDVKSGNSWYE 895


>gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
 gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
          Length = 902

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/982 (34%), Positives = 518/982 (52%), Gaps = 87/982 (8%)

Query: 1   MQKE-NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++    +LVDGSS+IYRA+YA   L+    G P  A+ GF  ML K+++  + +    
Sbjct: 1   MTEQARTFYLVDGSSYIYRAYYAVSRLTNSR-GFPTGAVLGFAQMLDKVVREKKPD---- 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           +  V+FD P  TFR+E+Y  YKA R K PE ++ Q+P ++   +  GIP +E+ G+EADD
Sbjct: 56  YICVVFDAPGPTFRHEMYAPYKATRQKAPEDMIAQIPYIKDLVRFRGIPQMELPGYEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           +IAT T+ A ++   V ++S+DKDL QL+  P    +D  K+       V  ++G+PP +
Sbjct: 116 LIATLTHWAVEQDIEVVVVSSDKDLHQLIDDPVVRQWDPQKDRVFMEWEVEDRYGVPPGR 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           MV   AL GDS DN+PG+ GIG KTA  LLQE+G+L+ I  N +R+     R+ + ++ E
Sbjct: 176 MVDYLALVGDSSDNVPGVKGIGDKTARQLLQEWGSLDRIYANLARVGSASVRDKLEKHRE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LSR+LV  R      +P+E          +L +F                       
Sbjct: 236 EALLSRRLVSFRE----DVPVER---------KLEAF----------------------- 259

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               +       +  +F SL D   K           L  ++  
Sbjct: 260 --------------APGPPLKSQLIGLFEELEFRSLLDSLRK----------ELNAVEPA 295

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +  P     +    +  +++   ++L      S ++ T   DA  S    ++    D   
Sbjct: 296 AAAPAGRTKHKIAGSMDELRTLAERLAGEPVVSIQVETTRKDAMASDLAGLSFGFEDDG- 354

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ L    S+            L+ L+         KIGH++K   +V  +
Sbjct: 355 -------AWYVPLGPDGSEG--DGRLPAAVALAALEPVLGRSRPAKIGHDLKTAWIVFKK 405

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI +RG   D M+ +Y+LD G+ ++ I  +A + L       +++    KS +  D I 
Sbjct: 406 HGIELRGIAFDTMVAAYLLDPGKQNYGIDRVAAECLGENIDSYEDVTGKGKSQVGFDTID 465

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   ++   ++   ++  +L+ KL   +L  ++E+++ P+I V+++ME  GI  D + 
Sbjct: 466 IGRAAAYSCAAADAARRMHPVLKRKLDESRLTELFEKIELPLITVLARMEFRGITADAEK 525

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +S +  K L    + IYDL+ EKFN+ SPKQL  ILF KL      KTK+G   +T 
Sbjct: 526 LESLSIDFQKALDRTADTIYDLAKEKFNIQSPKQLAYILFEKLGLRVVKKTKSG--PSTD 583

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             + +    ++PI  ++L +R L+K+K TYAD+L   IN RT R+HT Y+     TGRL+
Sbjct: 584 MAVLEELALEHPIADHVLVFRTLAKLKGTYADALGKLINPRTGRIHTSYNQTVAATGRLS 643

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T+ G+KIR AFI  P   L+SADYSQIELRILAH +K   L + F + 
Sbjct: 644 SSDPNLQNIPIRTEEGRKIRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHLLEAFRDD 703

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AAE+FGV+  +V+P+MRR AKTINF IIYG+ PF LA +LRI    A   I +
Sbjct: 704 EDIHRRTAAEMFGVSPIEVTPEMRRQAKTINFGIIYGMGPFGLAQRLRISTKTARTAIDK 763

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  + G+  +I+ T    R+ GY ET+ GRR    E+ S   +IR + ER AIN P+QG
Sbjct: 764 YFQGYRGVRRFIDTTIELARRLGYSETLLGRRRFIPELQSRNKTIRQLGERLAINTPLQG 823

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ ++AMI    +L    L T MLLQ+HDELVFE P EE+  A +++   ME     
Sbjct: 824 TAADLIKKAMIDAEDALNGSGLRTVMLLQVHDELVFETPREELAAAQELVRRVMEDV--- 880

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPLKV +   +NW E +
Sbjct: 881 -WKLDVPLKVELGWGDNWAEAH 901


>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
 gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
          Length = 943

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/987 (33%), Positives = 515/987 (52%), Gaps = 81/987 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPL-LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q++  LFL+DG + +YR++YA      +  DG+P  AI GF + L K+ +    E    +
Sbjct: 26  QQKPGLFLIDGMALVYRSYYALQQAGMKTRDGIPTGAIHGFASALLKIFEVWHPE----Y 81

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+ +Y  YKANRP  PE L+ Q+  +     AF IP I++ G+EADD+
Sbjct: 82  LAVTFDSREKTFRHNLYEPYKANRPAPPEDLVRQIEAILELIDAFSIPLIKLPGYEADDL 141

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I +     EK+  ++ I++ DKDL QLV     +    K+    E      ++ ++G+ P
Sbjct: 142 IGSAVKRFEKQ-CSIYIVTPDKDLAQLVHEGVIMLKPSKKQNELEPFGPAEIMAQFGVEP 200

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+ + L  LTGD+ DNIPG  GIG KTAA LL +YG L+NI  N   +  K  R ++  +
Sbjct: 201 ERFIDLLTLTGDTSDNIPGAKGIGPKTAAALLLKYGTLDNIYRNIGELTPKT-RASLEAF 259

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                L R+LV + +D+ + + LE L  +     R++ FL   E   +  R+ + +    
Sbjct: 260 QPQLDLIRQLVTIHSDIDLGLNLETLACKAPVQGRIMPFLGKYELKAVAVRLPSVFPGML 319

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           +N  P   + +  EN                 +   SL    +  +              
Sbjct: 320 SNGTPAEEERDEQEN-----------------NNAPSLDSPLTGAD-------------- 348

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I   + +++ V++LE   S +    T ++D F ++   I+ S   +
Sbjct: 349 -----------YAIIDTPEGVEKLVRQLEQADSFAIDTETTSLDTFQAELAGISFSLKPK 397

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +    +  +                        L  LK   EN    K G N+KYD LVL
Sbjct: 398 EARFIYFGK----------------GGLDIGNTLERLKPVLENPDIRKTGQNLKYDLLVL 441

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEI-LKSRKSSIPID 531
             YGIS+     D ML SYVLD     H++  +A + LS       E+     K    I 
Sbjct: 442 KNYGISLTPVAFDTMLASYVLDP-EEKHNLDDLAARHLSIRTTTFDELTAGEGKKRTHIL 500

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590
            +  +Q+ ++  +++++ L+L  +   KL+ ++ LLH+   ++ P+++V++ ME  GI I
Sbjct: 501 DVPSAQLSDYGCQDADIALRLQEVFEAKLLEDQRLLHLCRTIEFPLVEVLAGMEYQGISI 560

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L++ +  ++  +  L   I+  +G  FNL SPKQL  ILF  L  P+   TKTG +
Sbjct: 561 DTAHLEKTADLVNAQIGDLSRKIHAAAGTPFNLDSPKQLSGILFNTLGLPTKKTTKTG-F 619

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE++    +PII ++LE+R L K+K+TY D+LP  IN  T R+HT ++   T T
Sbjct: 620 STNVEVLEEL-APLHPIIGDLLEYRSLQKLKTTYIDALPKMINPGTGRLHTSFNQHVTAT 678

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIP++T  G++IRRAFI   P   ++SADYSQIELRI A I+    L +
Sbjct: 679 GRLSSSNPNLQNIPVRTTAGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDEKLIE 738

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N  DIHR  A  IF  + ++++  MRR AK +NF ++YGI P+ L+ +L IP+SEA 
Sbjct: 739 AFRNREDIHRATAKVIF--STDEITSDMRRKAKEVNFGVLYGIQPYGLSKRLNIPQSEAK 796

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I+ Y  ++PG+   + +     ++ GYV T+ GRR +  ++NS   +I+    RAA+N
Sbjct: 797 AIIETYTTKYPGLFHALLEIIEEGKRKGYVTTLLGRRRYIPDLNSRNGNIQKAAGRAAMN 856

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AADI + AM    + ++ + + + MLLQ+HDEL+FE   EE    S+++  +M 
Sbjct: 857 TPIQGTAADIIKCAMNLCDRQIKKNNMNSVMLLQVHDELLFETTAEEKNRLSKLVETAMI 916

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           +A +     +VP++V+     NW E +
Sbjct: 917 EAAVYCGLKKVPVEVDTGTGKNWLEAH 943


>gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
 gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
          Length = 924

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/975 (32%), Positives = 501/975 (51%), Gaps = 62/975 (6%)

Query: 13  SSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVT 71
            + +YRAF+A          GLP  A+ GF   L K+ +N        +    FD    T
Sbjct: 1   MAMLYRAFFALQRTGMSSPSGLPTGALYGFTTALLKIFENYHPH----YLVAAFDSREKT 56

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           FR+ +   YKANR   PE LL QL  +    +AFG+P I+  G+EADD+I          
Sbjct: 57  FRHHLLESYKANRAAPPEELLQQLEKLFELLKAFGVPVIKQAGYEADDLIGAMVTQFADV 116

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTG 187
              + I++ DKDL QLV     +    K     E +    V   +G+PP++      LTG
Sbjct: 117 -CRIGIVTPDKDLAQLVREGVQILKPGKNQHELEPLGCNEVKAHFGVPPKQFTNFLTLTG 175

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DNI G  GIG KTAA LL++Y  L+ +  +   +   K R+++ ++A    L  +LV
Sbjct: 176 DTSDNIVGAKGIGPKTAATLLEKYQTLDKLYQHLDELTP-KVRKSLEDFAPNRELVLQLV 234

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
            +  D P+ + LE L  ++     ++  L+ L F  +  R+           +   + + 
Sbjct: 235 TICCDAPLHVTLEELACKNPARDVVLPLLQELGFRTIAARL-----------QAASVALT 283

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
              N G      +  D    ++  +     TS  ++   P    + R             
Sbjct: 284 CACNDGGESAPPMQSDPN-SSNLLNGSDGNTSATDTAPPPSFPDVPR------------H 330

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           YT +   + +Q  +++L+ +   +    T ++D F ++   I++     K          
Sbjct: 331 YTLVETREQLQALLEELQQVTHIAVDTETTSLDVFEAELAGISLCAEAGKA--------- 381

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486
                + T+ D+  +    KE++  LK   EN    K G N+KYD LVL +YGI +    
Sbjct: 382 ---FFIATTPDALER----KEVVKQLKPLLENPAITKSGQNLKYDMLVLKKYGIELAPIS 434

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            D ML SYVL+     H++  +A ++L        E+  + K    I ++    +  +A 
Sbjct: 435 FDTMLASYVLNPDEH-HNLDDMALRYLGRTTTKYDELTGTGKQRRHIFEVEKEALTNYAC 493

Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           ++++V  QL  +L+ +L  E +LL +   ++ P++ V++ ME  GI ID + L +V+   
Sbjct: 494 QDADVAFQLEEVLQAQLQAEPQLLALCTTMEFPLVRVLATMEYAGIAIDTEHLARVAETT 553

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              L SL +NIY  +G  FN+ SPKQL  +LFT L  P+G  TKTG + T    LE++  
Sbjct: 554 ELELQSLTDNIYAAAGSSFNIDSPKQLSHVLFTDLSLPTGKSTKTG-FSTDVGVLEELAA 612

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
              PI  ++L +R L K+K TY ++LP  IN RT R+HT ++   T TGRL+S  PNLQN
Sbjct: 613 T-YPIASDLLSYRTLQKLKGTYIEALPKIINPRTGRIHTSFNQHITATGRLSSSNPNLQN 671

Query: 723 IPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           IP++T LG++IRRAFI   P   L+SADYSQIELRI A ++    L   F N  DIH   
Sbjct: 672 IPVRTALGKEIRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFRNGEDIHTAT 731

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A  IFG   E++S  MRR AK +NF ++YGI PF LA +L IP+ EA   I+ Y  ++P 
Sbjct: 732 AQVIFGT--EEISSDMRRKAKEVNFGVLYGIQPFGLAKRLNIPQKEAKVIIETYKAKYPQ 789

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +   +       ++ GYV T+ GRR +  ++NS   +++   ERAA+N PIQG+AADI +
Sbjct: 790 LFNVLRHIIEEGKEKGYVTTLLGRRRYIADLNSRNGTVQKAAERAAMNTPIQGTAADIIK 849

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AM   ++ ++   +A++MLLQ+HDEL+FE  + E    ++++ ++M++A +     +VP
Sbjct: 850 CAMNLCYQQMQASGMASEMLLQVHDELLFETTDSEKEALTKLVENAMKEAAVLCGMKQVP 909

Query: 962 LKVNIKVSNNWQEEN 976
           ++V+  V  NW E +
Sbjct: 910 VEVDCGVGKNWLEAH 924


>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
 gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
          Length = 950

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/986 (32%), Positives = 519/986 (52%), Gaps = 78/986 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            ++  LFL+DG + +YRAF+A      +  DG+P  A  GF   L K+ +    +    +
Sbjct: 32  TEKPELFLLDGMALVYRAFFALQRADMKTRDGVPTGAAFGFLTTLLKIYETYAPD----Y 87

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+E Y  YKANRP+ PE L+ QL  +    +AF IP ++  G+EADD+
Sbjct: 88  LAVAFDSREKTFRHERYDAYKANRPQPPEDLITQLDFIFRLIEAFNIPILKQPGYEADDL 147

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           I T     E E   + I+S DKD+ QL+     L    K +    +     + ++ GI P
Sbjct: 148 IGTAAREFEPE-CRINIVSPDKDMTQLIHDGVTLLKPGKRQNELLRFGAAELKEELGIAP 206

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + L  LTGDS DNIPG  GIG KTA+ LL  YG+L+ I  N  ++  +  R+++ E+
Sbjct: 207 DQFIDLLTLTGDSSDNIPGAKGIGPKTASKLLLSYGSLDEISKNLEKLPPRT-RKSLEEF 265

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                L R LV ++TD+ +  PL  L     +  +L   L+ LE   + +++   +    
Sbjct: 266 LPERELIRDLVTIKTDIDLQTPLASLQCGQPDPEKLFPLLERLELRAIASKIPDLF---- 321

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                                      +I  +  P+        
Sbjct: 322 ------------------------------------PAITPPKEIAPDNAPKVKREAHRA 345

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                P  +  YT I   +++    + L  + S +    T +++ F ++ + I+IS   Q
Sbjct: 346 PTITEPPEDAVYTLIDTEEELTTLTETLAGLSSFALDTETTSLNTFEAELVGISISVKPQ 405

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +    +                        ++ LS LK   EN    K G N+KYD LVL
Sbjct: 406 EAVFIYCSPEGLKP----------------EKALSILKPVLENPAIEKWGQNLKYDILVL 449

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDK 532
             YGI +     D ML SYV++   + H++  +AQ+ L Y      E+  + K ++P+ +
Sbjct: 450 KNYGIQLAPTGFDTMLASYVINPEET-HNLDDLAQRHLQYRTTTYSELCGTGKKAVPLRQ 508

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +    ++ +A +++++ L+L   L  +L   ++L  +   ++ P+++V+  ME  GI +D
Sbjct: 509 VPLEALKNYACQDADIALRLQNTLEKQLKDNQELEWLCRNIEFPLVNVLVAMEYRGISLD 568

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L++ + +++     L+E IY  +G  FN+ SPKQLG+ILFT+L  P+   TKTG + 
Sbjct: 569 TKHLEKTATKVASLTADLKERIYATAGSTFNIDSPKQLGEILFTRLGLPAKKTTKTG-YS 627

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  Q LE++    +PI ++ILE+R L K++STY ++LP  +N  T ++HT ++   T TG
Sbjct: 628 TNVQVLEEL-AMIHPIAQDILEYRSLQKLRSTYIEALPKILNPATGKLHTSFNQHITATG 686

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIPI+T+LG++IR+AFI+   +  L+SADYSQIELRI A ++    L + 
Sbjct: 687 RLSSSNPNLQNIPIRTELGKEIRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIEA 746

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N  DIH   A  IF  + E V+  MRR AK +NF ++YGI P+ L+ +L I + EA  
Sbjct: 747 FRNQEDIHAATAKAIF--DTEDVTSDMRRKAKEVNFGVLYGIQPYGLSMRLNISQKEAKA 804

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  Y  ++PG+ E ++       +NG+V T+ GRR +   +NS   +IR   ERAA+N 
Sbjct: 805 IIDTYKSKYPGLFEALDALVRQAAENGFVTTLLGRRRYIAALNSRNGNIRKAAERAAMNT 864

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI + AM  +  ++++HK+ + MLLQ+HDELVFE  EEE      ++V SM++
Sbjct: 865 PVQGTAADIIKYAMCLIENTMQEHKMHSTMLLQVHDELVFETNEEEHEKLETMVVASMKE 924

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A L     +VP++V+  +  NW + +
Sbjct: 925 AALVCGLKQVPVEVDTGIGKNWLDAH 950


>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
 gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
          Length = 972

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/992 (31%), Positives = 509/992 (51%), Gaps = 55/992 (5%)

Query: 7   LFLVDGSSFIYRAFYATPL-LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG +  YRAF+A      R   G P  A+ GF + +   ++  + E    + AV F
Sbjct: 8   LLLIDGHALAYRAFHALAEAGLRSSTGEPTYAVYGFTSAMLNAIEEYQPE----YAAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++Y +YKANR + P     QL  ++    AF IP    +G+EADD+I T  
Sbjct: 64  DV-GKTFRDDLYAEYKANRAETPAEFEQQLERIKQVLAAFDIPIYTAEGYEADDVIGTLA 122

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHVIKKW-GIPPE 177
             A + G  V I++ D D +QLV     +              +  +  V +++ G+ P 
Sbjct: 123 RQATERGVDVLILTGDTDTLQLVDDHVTVLLNNPYLRGPKNTTRYGVAEVTERYKGLRPH 182

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++  L+ L GD  DNIPG+ GIG   A  LL ++G +EN+  +      K+ ++++    
Sbjct: 183 QLADLRGLKGDPSDNIPGVKGIGEAGAIALLNQFGTIENLYDHLDE-APKRYQKHLEGQR 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDA 296
           + A  S+KL  +  D P+T+ L    L D +  R+I+  + LEF   L+ R+  +     
Sbjct: 242 DIALFSKKLATIVCDAPVTLNLADATLADYDRSRVIAVFQELEFGASLVKRLPPSGSTTV 301

Query: 297 ANIEPVVLDINTT---ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           A   P +   + +   +    A E    R+++ +  Q +   D          P+ +   
Sbjct: 302 AQPLPSIPQADASAPLQADMFAPEAPAVRESSAEPQQLTLFGD----------PEVVPPP 351

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                +        Y       D++  V +L T    +F   T  M+      + ++++T
Sbjct: 352 VAHVEAPLRAAPGEYRAACTDADLEAVVAELATAPLVAFDTETRGMNPLRDDLVGLSLAT 411

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           +  +          +I +   T +           +++ L+ FF +    K+ HN K+D 
Sbjct: 412 VPGR--------AWYIPVGHTTGEM----QLPRDRVIAALRSFFADPARPKVAHNAKFDI 459

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA----SIAQKWLSYTRKEILKSRKSSI 528
            VL R G+ + G   D ML + +LD  R+  D+A     +A+   +    +++   K+ +
Sbjct: 460 EVLERAGMPVAGLSFDTMLAAGLLDKRRNLKDLAFYELELAEPLDAIG--DLIGKGKNQV 517

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITG 587
              ++  ++   +A  ++++ L+L   L  KL     L  ++ RL+ P++ V+ +ME +G
Sbjct: 518 TFAEVPIARATRYAAADADMTLRLQPALEAKLRAAGSLADMFYRLEMPLVPVLVRMEQSG 577

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF-TKLKFPSG--AK 644
           I +D   ++ +   + + L  +E+ I+ ++G+ FN++S  QL ++LF  K+  P+    +
Sbjct: 578 ILLDVPYMRALGERMGRELAQIEQQIFAIAGKPFNINSGDQLSEVLFGPKINLPTTGLER 637

Query: 645 TKTGQWKTTAQDLEQINCGDNP-IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           T+TG++  TAQ LE++   D   II+ IL  R+LSK+KSTY D LP  +N  T RVHT Y
Sbjct: 638 TRTGRYSLTAQALEELQASDTTGIIELILRHRRLSKLKSTYVDELPALVNPETGRVHTDY 697

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           +     TGRL+S  PNLQNIP +T+ G+++RR FI+ P   LI+ADYSQIELR+LAHI  
Sbjct: 698 NQLGAATGRLSSNSPNLQNIPTRTEEGREVRRGFIAAPGHVLIAADYSQIELRVLAHITG 757

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L Q F    DIH   AA +FGV    V    RR AKT+ F +IYGISPF LA +L I
Sbjct: 758 DPNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIYGISPFGLAQRLGI 817

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R +A + I   F++FP I +YI++T    R  GYV+++FGRR    ++ +     R   
Sbjct: 818 SREQARNLIDSLFNQFPRIRDYIDRTLETGRNEGYVQSLFGRRRPMFDLRTS-GPRRQAA 876

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN PIQ +AADI + AMI+V   L   +L T+MLLQ+HDEL+FE PE E+     +
Sbjct: 877 EREAINHPIQSTAADIMKLAMIAVDAELRRRRLRTRMLLQVHDELIFEAPEAEVDEVVAL 936

Query: 944 IVHSMEKACLP-KINLRVPLKVNIKVSNNWQE 974
           +   ME           VPL+V I+  +NW+E
Sbjct: 937 VRERMEGVLSDMHPPFAVPLRVEIEKGSNWEE 968


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/980 (33%), Positives = 505/980 (51%), Gaps = 111/980 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           H  L+DG+S   RAFYA PLLS    GL  NA+ GF  ML K+L+  +     +H  V F
Sbjct: 3   HFVLIDGNSVANRAFYALPLLSTSA-GLHTNAVLGFTTMLLKVLEEMK----PTHIMVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D   V FR+  Y +YK  R K P  L  Q PL+R    AF I   E++G+EADDII T T
Sbjct: 58  DAGKVVFRHSEYAEYKGGRSKTPPELSEQFPLIRELLDAFSIKRFELEGYEADDIIGTLT 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+++ +  T+I+ DKD++QLVS    +  T K     E    E + +K+G+ P +++ 
Sbjct: 118 KQADEQAWKTTVITGDKDMLQLVSEHVSVALTRKGVSEIEMYTPEEIHEKYGLKPLQIID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GDS DNIPG+PG+G KTA  LL EYG++E +L N  ++  KK +EN+ E  + A 
Sbjct: 178 LKGLMGDSSDNIPGVPGVGEKTALKLLHEYGSVEQVLENIDKVSGKKLQENLRENVDKAN 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S+ L  +  +                                                P
Sbjct: 238 MSKALATILREA-----------------------------------------------P 250

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V LD+  T  +G      +      K  +F SL  +      E    +   +        
Sbjct: 251 VELDVQETGFEGY---DGLPVSEFFKKMEFKSLLSKIKVAQPEGGSGQADAKPFSFEMIS 307

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N  +Y   + +                +  I  D  +  H+  + I ++T D      
Sbjct: 308 EENKAAYESKLTSPM--------------ALYIEMDGENYHHAPFLGIGLATEDTVMFVP 353

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           + V   +                        L ++  +    K   + K D + L  +  
Sbjct: 354 WDVAKEW----------------------KALCEWLADPAKEKWVFDGKRDTVGLAWHDF 391

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPIDKISDS 536
           +++G   D+ L SY+L++  S+  + SIA ++         +   K  K  +P   +   
Sbjct: 392 AIKGISFDVYLASYLLNAAESNPTLDSIAAQYAQTRVLSDEEVYGKGAKRLVPEMDV--- 448

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            + EH    +  I Q   +LR +L   ++  +   L+ P+  V++ ME  G++++ + L 
Sbjct: 449 -LSEHVAHKAAAIWQSVPVLREQLAENEMEKLLGELEAPLSMVLALMEKQGVKVNSERLV 507

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q+  ++ K L  L + IY+L+G  FN++SPKQLG+ILF +L  P   KTKTG   +T+ D
Sbjct: 508 QMGEDLDKKLAGLTDQIYELAGGAFNINSPKQLGEILFDRLSLPVLKKTKTG--PSTSAD 565

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +     +PII  IL +RQL K++STY + L   I+ +T +VHT Y+ A+T TGRL+S 
Sbjct: 566 VLEKLAPYHPIIDAILTFRQLGKLRSTYIEGLTKEIHTKTSKVHTLYNQATTATGRLSST 625

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIPI+ + G+KIR AFI       +++ADYSQIELRILAHI++   L   F+  +
Sbjct: 626 DPNLQNIPIRMEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISQDENLIDAFQKGM 685

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A ++FGV+ E+V+  MRR AK +NF I+YGIS + L+  L I R EA D+I+RY
Sbjct: 686 DIHTRTAMDVFGVSEEEVTSLMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAGDFIERY 745

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  F G+  ++++     + +G+V T+  RR +  +I S   ++R+  ER A+N PIQG+
Sbjct: 746 FDVFSGVKRWMDEIVQQAKADGHVTTLLNRRRYLPDIRSSNFNLRSFAERTAMNTPIQGT 805

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI + ++LE+  LA++MLLQ+HDELVFEVP+ E+    +++   ME A    
Sbjct: 806 AADVIKLAMIRMQEALEEKGLASRMLLQVHDELVFEVPDNELEVMRKLVPEVMESA---- 861

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           ++L VPLKV++     W + 
Sbjct: 862 LSLDVPLKVDVSDGRTWYDA 881


>gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2]
 gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2]
          Length = 884

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/981 (32%), Positives = 511/981 (52%), Gaps = 109/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S IYRAF+A P L+    G   NA+ GF  ML +LL+  +     +H  V 
Sbjct: 2   DKLMLIDGNSIIYRAFFAMPPLTNSS-GQQTNAVYGFTTMLLRLLEEHK----PTHILVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   +TFR++ Y DYK  R K P  L  Q PL++    AFGI   E+ G+EADDII T 
Sbjct: 57  FDAGKITFRHKGYEDYKGGREKTPPELSQQFPLLKELLTAFGIAQFELDGYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++ GF V +++ DKD++QL S    +  T K     E    E + +++G+ P +++
Sbjct: 117 SRTADEAGFNVLVVTGDKDMLQLASDHVTVGLTRKGVTEVETYGPEQIQERYGLKPLQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPGIPG+G KTA  LL +YG++E +L +   +K  K +E +  +A+ A
Sbjct: 177 DLKGLMGDTSDNIPGIPGVGEKTALKLLHQYGSVEEVLAHTDELKG-KMKERVETHADDA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R+S++L  +       + L+                                      +E
Sbjct: 236 RMSKELATIYR----DVTLDK------------------------------------QLE 255

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            VV      E  G A          +   +F SL ++ S      +      E       
Sbjct: 256 DVVFSGLQAETAGPA----------LAKLEFKSLLERLSLSGEVGSAGVGVEEAAAD--- 302

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     ++N + I + V+ L  I      + T   +  H++ + +  +   ++   
Sbjct: 303 --------VTVLNEERISELVEVLNNINVLH--VETHGDNPHHAEIVGLIFAATGRQFFM 352

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +                     N L  +  + ++++  +    K GH++    L LH +G
Sbjct: 353 TL--------------------NVLQSDAATPIREWLADPERKKRGHDLHRTDLALHWHG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISD 535
           I   G   D+ L  Y+LD   ++  ++ +A K+    +    +   K  K  +P   +  
Sbjct: 393 IEFAGAEFDVQLAGYLLDPTDANQTLSGLAAKYGLSSIRPDDEVFGKGAKYKVPEMDV-- 450

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + +H    + VI  L  + + +L   ++  ++  L+ P+  +++ ME  GI ++ + L
Sbjct: 451 --LSDHVARKAAVIEALVPVQQAELEKTEMHKLFHELEMPLSRILADMEKQGILVNVEEL 508

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  E    + +L   IY ++G +FNL+SPKQLG+ILF KL  P   KTKTG + T A+
Sbjct: 509 RALGKEFEAQIATLVGEIYSIAGVEFNLNSPKQLGEILFDKLGLPVIKKTKTG-YSTDAE 567

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    + I++NIL++R ++K++STY + L   I+++T +VHT++      TGRL+S
Sbjct: 568 VLEKL-APYHDIVQNILQYRTIAKLQSTYVEGLLKEISEKTGKVHTYFRQTVAATGRLSS 626

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
             PNLQNIPI+ + G+KIR+ F+   P   +++ADYSQIELR+LA I+    L + F + 
Sbjct: 627 QFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHD 686

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A+++FGV  E V   MRR AK +NF I+YGIS + L+  L I R EAA +I +
Sbjct: 687 MDIHTKTASDVFGVPAEAVDSDMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAARFIDQ 746

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  F G+  Y++      +++GYV+T+  RR +  EIN+   + R+  ER A+N PIQG
Sbjct: 747 YFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASNFNQRSFAERTAMNTPIQG 806

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ +  +L +  L ++MLLQ+HDELVFEVP EE+ T  +++  +ME A   
Sbjct: 807 TAADIIKLAMVQMDAALRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAA--- 863

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L VPLK  +   +NW E 
Sbjct: 864 -LKLAVPLKAEVSYGSNWYEA 883


>gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
 gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
          Length = 894

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/980 (33%), Positives = 528/980 (53%), Gaps = 96/980 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + ++DG+S I RAFYA P L+ K +G   NAI GF  ML K++++   +    +  V
Sbjct: 2   EKRIVIIDGNSLINRAFYALPPLTNK-EGQHTNAIYGFVTMLLKVMEDYAPD----YIGV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++ Y +YKA R  +P  L  QL  ++    A  I  IE++GFEADD+I T
Sbjct: 57  AFDKKAPTFRHKEYTEYKAGRKGMPPELAEQLEPLKQVLDALNIYRIELEGFEADDLIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                E +G    I++ D+D +QL S TT +  T K     E  D + V++ + + P + 
Sbjct: 117 LAKHCEAQGIESLIVTGDRDALQLTSDTTKVLFTKKGISQLEIYDAKKVMEDYEVTPTQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PG+G KTA  LL+++  +EN++ N S I   K R+ I E  E 
Sbjct: 177 IDLKGLMGDKSDNIPGVPGVGEKTAIKLLKQFETIENMIQNTSEIAADKLRQKIEENIEM 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  + T+VP+          + +   L    K  ++ +LI              
Sbjct: 237 AVLSKRLATIVTNVPV----------EMDLDILRK--KEFDYERLI-------------- 270

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                      +  +F+SL  +  K N EQT         +  +
Sbjct: 271 ------------------------ELFRMYEFNSLIPRIKK-NMEQT--------QEIST 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               N ++   I +T  +++ ++++   G    K IT+  +    + +A+A++T  +   
Sbjct: 298 ANLGNRENIVAIKDTDALKKALEEIREQGQMVLKTITEENNIVTDRIVALAMTTTGEIQY 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                 K+    +I+S LK   E+EH   IGH++K + +  + Y
Sbjct: 358 YI------------------EFKDFKESDIISPLKDILEDEHIRIIGHDLKKEIIHFYPY 399

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISD 535
            I +   + D M+  Y+L+  +SS+ +  +A ++L       ++I+   K+ + +    +
Sbjct: 400 EIHIANLYFDTMVGEYLLNPAKSSYLLKDLALEYLGEEIIDEEKIVGKGKNQLSLWAAPE 459

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++V+     +  VI +L   ++ K+  + +  +Y  ++ P+++V++ ME  GI++D+++L
Sbjct: 460 NEVKALLCNHVKVIAELAKYIQEKIEDQGIHKLYYEVELPLVEVLASMEFLGIKVDRNML 519

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             +  E  + +  L   IY L+G  FN++SPKQLG++LF KL  P   KTKTG   +T  
Sbjct: 520 LALEVEFKEIIDKLTSEIYSLAGISFNINSPKQLGEVLFEKLGLPPTKKTKTGY--STNA 577

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +     + II  I E+RQ++K+K+TY D L + IN  T R+H+ ++   T TGR++S
Sbjct: 578 DVLEKLQDQHEIIPKISEYRQVTKLKTTYVDGLLSIINPVTNRIHSSFNQTVTATGRISS 637

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIP++ ++G+++R+ FIS    + I ADYSQIELR+LAHIAK   L   F  + 
Sbjct: 638 TEPNLQNIPVRLEMGRRLRKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLIDAFIKNQ 697

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+EIF V +E+V+  MR  AK +NF I+YGIS F L+  L IP S+A  YI+ Y
Sbjct: 698 DIHTRTASEIFEVPMEEVTSLMRGDAKAVNFGIVYGISDFGLSQNLNIPVSKAKKYIESY 757

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F ++P I EY+       ++ GYV T+  RR +  E+ S   +IR+  ER A+N PIQGS
Sbjct: 758 FEKYPSIKEYMHNIVEEGKEKGYVVTLLNRRRYLPELKSSNFNIRSFGERIAMNTPIQGS 817

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI+V+  L+      K++LQ+HDEL+ E PE EI   S+I+  SME A    
Sbjct: 818 AADIIKIAMIAVYNRLKAENYDAKLILQVHDELIIECPENEIEEVSKILKESMENA---- 873

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           I + VPLKV++  +NNW + 
Sbjct: 874 IEMVVPLKVDLSYANNWYDA 893


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/987 (33%), Positives = 527/987 (53%), Gaps = 76/987 (7%)

Query: 6   HLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            LFL+D  + IYRA+Y+    PL++ K  G   +AI GF N L  +L+        +H  
Sbjct: 2   KLFLLDAYALIYRAYYSFIKMPLINSK--GFNTSAIFGFVNTLDNILRREN----PTHIG 55

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR++++  YKA R + PE +   +P+++    A+ IP +E+ G+EADD+I 
Sbjct: 56  VAFDPIEPTFRHQVFKQYKAQREETPETIRLSIPIIKDIVSAYHIPILEVSGYEADDVIG 115

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG-IPPE 177
           T         + + +++ DKD  QLV     +Y         E + ++ + +K+G I P 
Sbjct: 116 TVAKK-TSRDYEIFMMTPDKDYGQLVDEHIFIYKPRYRKDGFEILGVKEIKEKYGFISPI 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +M+    L GDS DNIPG PGIG  TA  L+  +G++EN+L N   +     +  I    
Sbjct: 175 QMIDFLGLMGDSSDNIPGCPGIGEITAKKLIARFGSIENLLKNVHFL-NGILKTKIERNK 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           ET   S+ L  ++TDVPI      LI ED + P L    + LEF +L++R          
Sbjct: 234 ETILFSKFLATIKTDVPINFNPNELIREDIDKPVLKKIFEKLEFHQLVSRFF-------- 285

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +  VL I    +  +    +       KT    S  D  S +                
Sbjct: 286 GEKRSVLSIKKQFSSSLLFTDKFVEKNNEKTETVLSNFDNLSTV---------------- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT---MDAFHSKPIAIAISTL 414
                     Y  I    DI   + K++     SF I T     +D   ++ + IA +  
Sbjct: 330 -------LHKYRVIDKQSDIGDLINKIKIQNFFSFNIKTTEAIEIDPLSAELVGIAFTLQ 382

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           + +          F+           G+       +   K+ FE++  LK+G N+KYD  
Sbjct: 383 EGE--------AYFLPF--------FGRKRDIIPTVQLFKEIFESDTILKVGQNLKYDIN 426

Query: 475 VLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRK-SSIP 529
           VL +YGI M     DI++  Y+++     H++  +A+ +L+Y     +E++ S+K S + 
Sbjct: 427 VLKKYGIRMNYPIFDILIAHYLINP-EYLHNLDFLAKTYLNYRIINTEELIGSKKESQLS 485

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           + ++  S + ++A EN++++L+L  +  P +      +++ R++ P++ V+S ME  G++
Sbjct: 486 VRQVPLSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVFVLSDMEEFGVK 545

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D   LK  S  +++ L S+E+ I+ +SG+ FN++SPK +G+ILF  LK    +K     
Sbjct: 546 LDISALKDYSVVLNRYLESIEKIIFQISGKIFNVNSPKMVGEILFDHLKIIENSKKTKSG 605

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
              T++ + +     +PI+  IL++R+  K+ +TY D+LP  ++   +++HT Y+ A+T 
Sbjct: 606 QYATSEGILENLKKKHPIVGEILKYRKSKKLLTTYIDTLPTLVSFIDKKIHTTYNQATTA 665

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+   G++IRR FI       +SADYSQIELRI+AH+++   + +
Sbjct: 666 TGRLSSNSPNLQNIPIRDKEGKEIRRVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLE 725

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N  DIH  +A+ IFGV + +++  MRR AK  NF IIYGIS F LA QL++ R  A 
Sbjct: 726 AFRNGQDIHSAIASIIFGVPLAEITCDMRRKAKITNFGIIYGISVFGLAEQLQVSRFIAK 785

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I +YF  FP I  YI+++    R++GYVETIF R+    +INS  S +R   ER +IN
Sbjct: 786 ELINKYFMIFPDIKNYIDRSIAIARKDGYVETIFRRKRFLPDINSRNSVVRKYAERNSIN 845

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM  +H+ L D+ L +KM++Q+HDEL F V  +E+    QI+V+ ME
Sbjct: 846 APIQGSAADIIKVAMNRIHRRLIDNDLQSKMIIQVHDELNFNVFIDELDKVKQIVVYEME 905

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A     +L+VPL VN  +  NW E +
Sbjct: 906 HAT----HLKVPLVVNCGIGKNWLEAH 928


>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
 gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
          Length = 936

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/986 (33%), Positives = 513/986 (52%), Gaps = 88/986 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPL-LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            K+  LFL+DG + +YR+F+A         DG+P  A  GF   L K+ +  + E    +
Sbjct: 28  SKKPSLFLLDGMALVYRSFFALQRAGMSTKDGIPTGAAYGFLMTLLKIFETGKPE----Y 83

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+E+Y  YKANRP+ PE L+ QL L+    +AF IP ++  G+EADD+
Sbjct: 84  LAVAFDSKEKTFRHELYAPYKANRPEPPEDLIAQLELIFKLVEAFRIPILKQPGYEADDL 143

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           I +     EK+   + I++ DKDL QLV+    +    +       +  + V K++G+PP
Sbjct: 144 IGSAVRQFEKQ-CEIVIVTPDKDLAQLVNEGVSILKPGRNRNELDTMGCDEVKKQFGVPP 202

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E  +    LTGDS DNIPG  GIG KTA+ LL  YG LEN+L +   +   + R+++ E+
Sbjct: 203 ECFIDFLTLTGDSSDNIPGAKGIGPKTASKLLTTYGTLENVLAHIEEL-APRSRKSLEEF 261

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
               +L + LV +RTD+ +   L  L   + +  +L   L+ L                 
Sbjct: 262 ETNRKLIQALVTIRTDIELDTTLPELASGEPDSVKLFGLLEKL----------------- 304

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                            + +S++++   I    TP +  L+   
Sbjct: 305 ---------------------------------EMNSVAEKIPHIFPGSTPPRTGLQEQS 331

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + S  P    +Y  I     + +    LE   S S    T +++ F ++ + I+I     
Sbjct: 332 EPSFSPPEGAAYHLIDTEAALTELTNTLEKQSSFSIDTETTSLNTFEAELVGISICWKPG 391

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +                      T K    K     L+   EN    K G N+KYD LVL
Sbjct: 392 EAYFIH----------------FTDKELSAKTFPGKLQDVLENPDIKKTGQNLKYDILVL 435

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
             + + +     D ML SYV++     H++  +A+K L++      E+  + K +IPI +
Sbjct: 436 KNHHVRLAPVGFDTMLASYVINP-EEKHNLDDLAKKHLNHRTITYSELTGTGKKAIPIRE 494

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591
           +   ++  +A ++++V LQL    +  L    +L  +   ++ P+++V++ ME  GI +D
Sbjct: 495 VPIDRLTVYACQDADVALQLEQKQKILLGENSELEQLCVNIEFPLVEVLADMEYLGIALD 554

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L++ +  +++ LL L E IYD +G  FN+ SPKQLG++LF  L  P+   TKTG + 
Sbjct: 555 TAQLERTAETVNRQLLELTERIYDTAGTIFNIDSPKQLGNVLFNVLGLPAKKTTKTG-FS 613

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  Q LE ++   +P+ K++LE+R L K+K+TY D+LP  +N +T RVHT ++   T TG
Sbjct: 614 TNVQVLEDLSLI-HPVAKDLLEYRSLQKLKTTYIDALPKILNPKTGRVHTSFNQHITATG 672

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIPI+T LG++IR+AFI     + L+SADYSQIELRI A I++ + L   
Sbjct: 673 RLSSSNPNLQNIPIRTPLGREIRKAFIPSTSDRYLLSADYSQIELRIAAEISQDSHLIDA 732

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N  DIH   A  IF  + + ++  MRR AK +NF ++YGI P+ LA +L I + EA  
Sbjct: 733 FRNREDIHTATAKTIF--DTDDITKDMRRKAKEVNFGVLYGIQPYGLAQRLNISQKEAKA 790

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  Y  ++PG+   ++ T     + GYV T+ GRR + + + S   +IR   ERAA+N 
Sbjct: 791 IIDTYISKYPGLFSALQTTITEAAEKGYVTTLTGRRRYIENLRSRNRNIRMAAERAAMNT 850

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AM  V ++++  ++ + MLLQ+HDELVFE  EEE    ++I    M+K
Sbjct: 851 PIQGTAADIIKCAMGLVSEAIKKKRMQSAMLLQVHDELVFETTEEEKAALAEIAEGCMQK 910

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A        VP++V I    NW E +
Sbjct: 911 AAELCGLETVPVEVEIGTGKNWLEAH 936


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/988 (31%), Positives = 501/988 (50%), Gaps = 99/988 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+D  S IYRA++A P       G   NAI GFCNML +++     +S     AV F
Sbjct: 8   KVVLIDAYSLIYRAYHALPSDLATSKGEKTNAIYGFCNMLVQVINRENPDS----IAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR++ + +YKA R  +P+ L  Q+  VR    AF IP  E+ G+EADD+I +  
Sbjct: 64  DV-GKAFRHDEFVEYKAQRAPMPDDLQAQIGRVRQVIAAFDIPVYEVPGYEADDVIGSLA 122

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPEKMV 180
                +G  V I++ DKD +QLVS +  +    +           + V  ++G  P  +V
Sbjct: 123 KKLSSQGHQVVIVTGDKDFLQLVSDSVSVVLPARGRFSEVQVYTPDLVRLQYGFDPRYIV 182

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD+ DNIPG+PG+G KTA  L+Q +G+L+NIL N   IK ++ R  I E+    
Sbjct: 183 DFKALMGDASDNIPGVPGVGEKTARSLIQTFGSLQNILENVDSIKPERIRNAIKEHQSQL 242

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             + +L  + TD+ + I          +  ++    + LEF  L+ R+   ++    +  
Sbjct: 243 IQNLRLATIVTDIDVDIEPVISHAWAPDMQKVNEIFRELEFRSLMYRLPKYFEPQNTS-- 300

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                             S++ + +   + PQ            
Sbjct: 301 ----------------------------------SEKVASVERNEQPQI----------- 315

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                + Y  + + + +++ V++L      +F   T   +   S  + ++ S        
Sbjct: 316 ----QEKYEIVSDQESLRRLVRELLAKEYIAFDTETSGKNVMESDLVGVSFSPKAGI--- 368

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ ++  +          TK++L  L    E     KI HN K+D + L+++G
Sbjct: 369 -----AYYVPINGFSDDG-------TKDLLDELSPLLE-GGPKKIAHNAKFDYMALYKHG 415

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536
           I +   + D  + +++L+   +S  +  +A   L         ++   K+   + ++S  
Sbjct: 416 IRVSPLYFDTSIAAFLLN--ETSVGLKDLAATRLGIQMTTIDSLIGKGKNQKTMLEVSVD 473

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A  ++++  +L+ +L  +++  KL  ++  L+ P++ V++ ME+TG+ ID D LK
Sbjct: 474 ECARYACADADMTFRLFTMLEKEIVERKLQDLFYTLEMPLVPVLADMEMTGVAIDADALK 533

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S ++ + +  +E  IY+++G +FNL SP+QL   LF  L      KT  G     A  
Sbjct: 534 SLSTKLYEQIRDIESQIYEIAGYEFNLKSPQQLSKFLFQDLGLKGIRKTSKGYSTDAAT- 592

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +   G +P+I  IL +RQL+K+K TY D+LP  +++ T R+HT +S  S +TGRLAS 
Sbjct: 593 -LEALSGQHPVIDLILSYRQLTKLKDTYVDALPLMVSRSTGRLHTNFSQTSAVTGRLASS 651

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS----------PPTKKLISADYSQIELRILAHIAKITP 766
           +PNLQNIPI++ LG+++R+AF++               L+SADYSQIELR+LAH+     
Sbjct: 652 DPNLQNIPIRSSLGKEVRKAFVAGSPEKNNAIFDEPSVLLSADYSQIELRVLAHVTDEPK 711

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F   +DIH + A+ +FGV IE V   MRR  KTINF IIYG+S FRLA    + + 
Sbjct: 712 LKEAFSRDIDIHALTASRLFGVPIESVDDNMRRMGKTINFGIIYGMSGFRLARDTGLEQR 771

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  ++KRY  +FP +  Y E+      + GYVET  GRR +  +I S     R    RA
Sbjct: 772 EANLFVKRYMDQFPRVKAYFEQLIKEAEKKGYVETPLGRRRYLPDITSSNPQRREAARRA 831

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN PIQG AADI ++AMI VH +LE   +  KM+LQ+HDEL+FEV E ++  A+++IV 
Sbjct: 832 AINMPIQGMAADIIKQAMIDVHSALEREGIKAKMILQVHDELLFEVAESQLDRAAEVIVR 891

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M  A     +L VPL V  +   NW E
Sbjct: 892 EMSTA----FDLSVPLVVEAEYGPNWGE 915


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/977 (32%), Positives = 515/977 (52%), Gaps = 94/977 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N L+L+DGSS++YRA++A   LS    G P NAI GF  ML KLL++ +      H A+
Sbjct: 2   NNTLYLIDGSSYLYRAYFAIKRLS-SPSGFPTNAIYGFTQMLLKLLKDYQPH----HVAM 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD   VTFR E+YP YKANR ++P+ L  Q+  +R   +AF IP +E+QG+EADD+I T
Sbjct: 57  VFDVGRVTFRTELYPAYKANRAEMPDDLRQQIGPIRDLVRAFNIPVVELQGYEADDLIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                E  G  V +++ DKDLMQ+V+  T L DT+K     I  V +++G+ PE ++ + 
Sbjct: 117 LAARWEATGGQVVVVTGDKDLMQIVTEQTTLLDTMKNVTSAIPQVHERFGVGPEGVIDIL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS DN   IPG                         I +K   + + ++       
Sbjct: 177 GLAGDSSDN---IPG----------------------VPGIGEKTAIKLVQQFGSMDN-- 209

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
             L+    +VP  +           G +L  F           R++ T    A  I+ V 
Sbjct: 210 --LLERAAEVPGKV-----------GEKLREF-------SEQARLSRTL---ATIIKDVP 246

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            +++  +      +TE   +   K   F +L                     +  +Q  +
Sbjct: 247 YELHPDQLLAQEPDTE-RLNELFKLYGFHTLIK-------------------EMTAQATL 286

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
             D Y  I+  +D+++   +LE   + +F   T  +D   ++ + I+IS    +      
Sbjct: 287 QTDQYHCILTNEDLEKLALRLEAAPAFAFDTETTGLDPRTAELVGISISLQAHE------ 340

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I +               + +L  L+  F N    K+G N+K+D  +L   G+ +
Sbjct: 341 --AFYIPVGHRYL--GMPDQLPRETVLERLRPAFGNPAIRKVGQNLKFDLQILAVAGLEV 396

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
           +G + D ML SY+L+  R  H + ++AQ+ L++      E+  S K+ I   ++   +  
Sbjct: 397 QGSWCDTMLCSYLLNPSRGGHGLDALAQEHLNHKMISYDEVTGSGKNRICFSEVEVEKAT 456

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+++    L   L P L  + L  +   L+ P+++++++ME  G+ +D   L ++ 
Sbjct: 457 RYAAEDADATWLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELG 516

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
               + +  LE+ I +L+G  FNL+SPKQL ++LF +L   +G KTK    ++T  ++  
Sbjct: 517 NGFGQRMQELEKRIIELAGGPFNLNSPKQLEEVLFERLGLQAGKKTKGKTGRSTDNEVLT 576

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++ I K +L++R L+K+KSTY D+L    +++  RVHT Y+ A T TGRL+S +PN
Sbjct: 577 GLAEEHEIAKLLLDYRGLTKLKSTYTDALAKLTDRQG-RVHTSYNQAVTATGRLSSSDPN 635

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+TD G++IR AFI+PP   +++ADYSQIELR+LAH+++       F    DIH 
Sbjct: 636 LQNIPIRTDEGRRIREAFIAPPGCVILAADYSQIELRVLAHLSQDPVFCDAFSQDEDIHT 695

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+FG+  E V+ +MRR AKTINF IIYG   F LA QL + R+ A  +I  Y  R 
Sbjct: 696 RTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQGAFSLAKQLGVARNVAEKFIAAYKERH 755

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G   +++      ++ GYV TI GR++   +I S   ++R+  ER AIN PIQGSAADI
Sbjct: 756 SGAIAFLDSCIASAKETGYVTTILGRKLPIADITSSNGNLRSFAERNAINYPIQGSAADI 815

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            ++AM+ V +++    L +++++Q+HDELVFEV E E+    +++   M +A    + L+
Sbjct: 816 IKQAMLGVDRAIRAEGLQSRLIMQVHDELVFEVLETELEQMRELVNREMSQA----VALK 871

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPLKV+I+   NW E +
Sbjct: 872 VPLKVDIQWGKNWSEAH 888


>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 939

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/979 (32%), Positives = 507/979 (51%), Gaps = 61/979 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DGSS ++RAFYA P L     G+  NA+ GF  ML +L    R+E      AV  D
Sbjct: 6   FMVIDGSSLLHRAFYALP-LMSTSQGVHTNAVYGFLTMLERL----RREYQPDFLAVCLD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              +T R + Y  YKA R   PE L PQ  L++    A+ IP  E +G+EADD+I     
Sbjct: 61  KSRITHRTQRYEAYKAQRGATPEELRPQFGLLKEVLAAWRIPLFEEEGYEADDLIGALVC 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +A+K+G    I++ D+D  QL+SP   +  T K     E+ D E +  K G+ P ++V  
Sbjct: 121 LAKKQGIDSLIVTGDRDAWQLISPGVEVLFTRKGISELERYDEEALKAKIGLTPRQVVDW 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD  DNIPG+PG+G K A  LL+++G+++++      +K  K +E +  + E A L
Sbjct: 181 KGLMGDPSDNIPGVPGVGEKRAFKLLEQFGDMDSLYERLDEVKG-KLKEKLATHREQAFL 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+L  ++ ++P+    E       + P L    K LEF  L+  +      D A    +
Sbjct: 240 SRELATIQCNIPLEPDWEACRAASPDFPALRRLYKKLEFRSLLRHLPGDEGDDEAEGGSL 299

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  + + ++    +  D T       S ++     +     Q +  ++  ++    
Sbjct: 300 ---FARQDEQAVSAVDPMGADGTAGGGVRCSAAEGDKPGDG----QAVRPDQAVRIDVEA 352

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGS-----ASFKIITDTMDAFHSKPIAIAISTLDQK 417
                YT + +   I   + +L  IG+      +     +       K   I ++     
Sbjct: 353 PLTVEYTAVEDGNAIGAMLTELMQIGAEPGCRTAVLAAWEG-SPRTGKLKQIVLA---AG 408

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            D   ++  I    +                  +  K F+ ++   K+  + K   L+  
Sbjct: 409 RDALLRLWVIDRPGA----------------FFAATKPFWASKDHRKLFFDAKSLWLLAR 452

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           R    + G + D +L +Y+LD   + + +A  A  W+ +      ++ +S +P       
Sbjct: 453 REDTVIEGIDGDGLLGAYLLDPLANRYSLARSAHDWIGWKVD--TEAGRSVLP------- 503

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              E     +  +  +  ++  +L  E L  +Y  ++ P+  ++  ME TGI+++  +L+
Sbjct: 504 --PEEGARAAAALFHMTPVMEARLGEEGLCALYRDVELPLAPILGAMEWTGIKVNPAVLQ 561

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +++ E+  ++  L+ +IYDL+GE FN++S +Q G ILF KL  P   +TKTG + T  + 
Sbjct: 562 EMAGELGADIRRLQADIYDLAGESFNINSTQQFGKILFEKLGLPVIKRTKTG-YSTDVEV 620

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++    +PI+  +LE+RQL K+KSTY + L   I+    R+HT ++ A T TGRL+S 
Sbjct: 621 LEEL-ADRHPIVPKVLEYRQLMKLKSTYVEGLLPLIDGEDGRIHTSFNQAVTATGRLSST 679

Query: 717 EPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIP++ + G++IR+AF +P     L++ADYSQIELRILAH++        F  + 
Sbjct: 680 EPNLQNIPVRLEQGRRIRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQ 739

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+FGV +E V+ +MRR AK +NF I+YGIS F L+  L + R+EA  YI  Y
Sbjct: 740 DIHTRTASEVFGVPMENVTSEMRRRAKAVNFGIVYGISDFGLSRDLGVLRAEARQYIDGY 799

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+ G+  YI++     R+ GYV T+ GRR    ++       +N  ERAA+N PIQG+
Sbjct: 800 FDRYSGVKGYIDEIIAEARRQGYVTTLLGRRRRLPDLFVKNKIRQNFGERAAMNTPIQGT 859

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ +   L    L T+MLLQ+HDEL+FE P+EE++ A+ +I  +ME+     
Sbjct: 860 AADIIKAAMVRIPGLLAAKGLKTRMLLQVHDELIFEAPKEELSEAAALIRETMEQ----T 915

Query: 956 INLRVPLKVNIKVSNNWQE 974
           I L VPL V++K   NW E
Sbjct: 916 IRLDVPLTVDVKTGPNWYE 934


>gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4]
 gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4]
          Length = 793

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/798 (44%), Positives = 520/798 (65%), Gaps = 8/798 (1%)

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +Q+L GDS+DN+PG+PGIG KTAALL+ E+G+LE +L  A  IKQKKRREN++E+AE AR
Sbjct: 1   MQSLAGDSVDNVPGVPGIGLKTAALLINEFGDLETLLEKAETIKQKKRRENLIEFAEQAR 60

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S++LV L+ DVP+ +P+  L + D +GP+ + FLKA+ FT L  RVA T D +AANIEP
Sbjct: 61  VSKQLVTLKQDVPVELPVTDLQVSDIDGPKAVGFLKAMGFTTLTKRVAETTDAEAANIEP 120

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
              ++   +      + +         S  +  ++  +      TPQ L   R +K +  
Sbjct: 121 DDFEVPGWD----VPDHKGRMAEKAAPSTPAQSTEGAADTGDMMTPQALADARAEKAATS 176

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+  +Y ++++   +++WV +   +G  +F   T +++A  ++ + I++ST   K    
Sbjct: 177 AIDTSAYEQVLSADRLKEWVAEAYEVGYVAFDTETTSLNAMQAELVGISLSTSTGK-ACY 235

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             +  I  +  +             K+ L+ LK   E+   LKI  N+KYD LV+  YG+
Sbjct: 236 IPLAHIDGEGDLLGGGALIEGQIPLKDALAILKPMLEDPAVLKIAQNLKYDWLVMTHYGV 295

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538
           ++  ++D ML+SY +D+G+  + +  ++++WL +     KE+  S KS I  DK+   + 
Sbjct: 296 NVTSYDDTMLLSYTVDAGKGGNGMDELSERWLGHKPIPFKEVCGSGKSMITFDKVPLDKA 355

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A E+++V L+LW +L+P+L  +++  VYE L++PM+ V+++ME  GI +D+ +L ++
Sbjct: 356 TAYAAEDADVTLRLWQVLKPRLASDRMATVYETLERPMVPVLARMEQRGIAVDRQMLSRL 415

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S + ++ +  LE  I++L+GE FN+ SPKQLGDILF K+  P G KTKTG W T+A  LE
Sbjct: 416 SGDFAQGMAGLEAEIHELAGESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSASVLE 475

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +    + +   I+EWRQLSK+KSTY+D+LP +I+  T+RVHT Y+LA+T TGRL+S EP
Sbjct: 476 DLAAEGHTLPSKIVEWRQLSKLKSTYSDALPGYIHPDTKRVHTSYALAATTTGRLSSSEP 535

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T  G+KIR+AF++    KLISADYSQIELR+LAH+A I  L + FE  LDIH
Sbjct: 536 NLQNIPVRTAAGRKIRQAFVAEKGMKLISADYSQIELRVLAHMADIPQLKKAFEEGLDIH 595

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            M A+E+FG  IE + P +RR AK INF IIYGIS F LA QL I R EA+DYIK YF R
Sbjct: 596 AMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAFGLAAQLGISRGEASDYIKTYFER 655

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPGI EY+E TK  V   GYV TIFGR+ HY ++N+   ++RN  ERAAINAPIQGSAAD
Sbjct: 656 FPGIKEYMEATKKQVHATGYVTTIFGRKAHYPDVNTKNPNMRNFYERAAINAPIQGSAAD 715

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I RRAM+ +   L   KL  +MLLQ+HDEL+FEVPE ++     +I   ME AC P + L
Sbjct: 716 ILRRAMVRMEDRLLSSKLDAQMLLQVHDELIFEVPEVQVDATIPLIKDVMENACDPVLKL 775

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL+V+ + ++NW E +
Sbjct: 776 SVPLQVDARAADNWDEAH 793


>gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
 gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
          Length = 944

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/986 (34%), Positives = 519/986 (52%), Gaps = 77/986 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPL-LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            ++  L L+DG + +YRAF+A         DG P  A+ GF + L K+ +  + +    +
Sbjct: 25  AEKPKLILIDGMAMLYRAFFALQRAGMTSRDGKPTGAVYGFTSALLKIFETYKPD----Y 80

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR+ +YP YKANR   PE L+ QL  V     AF IP I+I GFEADD+
Sbjct: 81  LAAAFDSREKTFRHHLYPLYKANRSAPPEDLISQLDAVFELLAAFDIPLIKIPGFEADDL 140

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   I + E  AV I++ DKDL QLV     +    K     E +    + +++G+PP
Sbjct: 141 IGTAARIFQPE-CAVFIVTPDKDLAQLVQDGVSILRPGKNQNELELLGRSEIAEQFGVPP 199

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+   L  LTGD+ DNIPG  GIG KTAA LL +Y +L+NI ++   +  K R   + E+
Sbjct: 200 ERFTDLLTLTGDTSDNIPGAKGIGPKTAATLLGKYDSLQNIYLHLGDLSPKNRL-TLEEF 258

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                L ++LV +RTD+ I + L+ L     +   L+  L  LE   +I R+   +    
Sbjct: 259 QPQLDLIKQLVTIRTDLQIDLTLKELACGSPDLTLLLPLLNKLELKTVIGRLPVVFPKLM 318

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +        +  ++   A E E+    T                               
Sbjct: 319 EHASLEASMHDGPDSPLAAAEPELRSPRTGA----------------------------- 349

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I   + ++  +  L+     +    T +++ F ++   I+IST  +
Sbjct: 350 ----------DYGVITTEEGLKALINSLQDAPRIAVDTETTSLNTFEAELAGISISTEAR 399

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K          FI L+  +           +  L  L+   EN    K G N+KYD LVL
Sbjct: 400 K--------ARFIALANSS--------LNPQSALELLRPLLENPELPKTGQNLKYDILVL 443

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            +YGI +     D ML SYVLD     H++  +A + L Y     +E+  + K+ + I  
Sbjct: 444 KKYGIDLTPVGFDTMLASYVLDP-EEKHNLDDLAARHLGYKTTTFEELTGTGKAKLHIFD 502

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQID 591
           +   Q+ ++A +++++ LQL  + R KL  EK LL + E ++ P++ V++ ME  GI ID
Sbjct: 503 VEPEQLSDYACQDADLALQLEEIFRKKLEGEKELLWLCEHIEFPLVSVLAAMEHAGICID 562

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L++ S  + K L  L E IY  SG  FN+ SPKQL +ILF  L  P+   TKTG + 
Sbjct: 563 TPHLEKTSEAVGKELELLTEKIYAASGAPFNIDSPKQLSNILFNVLGLPTKKSTKTG-FS 621

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T  + LE++    +P++ ++LE+R L K+K+TY D+LP  +N  T R+HT ++   T TG
Sbjct: 622 TNVEVLEEL-AELHPVVASLLEYRTLQKLKTTYIDALPKIVNPLTGRLHTSFNQFITATG 680

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIPI++ LG++IRRAFI   P K L+SADYSQIELRI A I+    L + 
Sbjct: 681 RLSSSNPNLQNIPIRSPLGKEIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEA 740

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N  DIH   A  IFG   ++++P MRR AK +NF ++YGI PF L+ +L IPRSEA  
Sbjct: 741 FRNREDIHTATARVIFG--SDEITPDMRRKAKEVNFGVLYGIMPFGLSKRLNIPRSEAIA 798

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I  Y  ++PG+   +++     +++GYV T+ GRR +  ++NS  S+I+   ERAA+N 
Sbjct: 799 IIDTYKAKYPGLFLALQEIIETGKKDGYVSTLLGRRRYIADLNSRNSNIQKAAERAAMNT 858

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AM    + L  + + + MLLQ+HDEL+FE  +EE    + +I  +M  
Sbjct: 859 PIQGTAADIIKCAMNLCSERLRKNSMRSVMLLQVHDELLFETTDEEKEPLADLIEEAMID 918

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A +      VP++V+  +  NW + +
Sbjct: 919 AAIICGLKNVPVEVDTGIGKNWLDAH 944


>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
          Length = 932

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/983 (32%), Positives = 514/983 (52%), Gaps = 79/983 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +   ++DGSS ++RAFYA P +S    G+P NA+ GF  M  +L    R+E    + A
Sbjct: 10  KNSVFMVIDGSSLLHRAFYALPPMS-SSQGVPTNAVYGFLTMFERL----RREYQPEYLA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V  D    TFR + +  YKA R   P+ L PQ  L++    A  I   E +GFEADDII 
Sbjct: 65  VCLDKSRTTFRTQTFEGYKAQRGATPDDLRPQFGLLKEVMAAHDIGVYEQEGFEADDIIG 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T + +A+++G    I++ D+D  QL+SP   +  T K     E+ D E + +K G+ P++
Sbjct: 125 TLSCLAKEKGIYTLIVTGDRDAWQLISPGVEVLLTRKGISEVERYDEEALKEKVGLSPKQ 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+ L GD+ DNIPG+PG+G KTA  LL+++G +E +      +K  K +E ++ + E
Sbjct: 185 IIDLKGLMGDTSDNIPGVPGVGEKTALKLLEQFGTMETLYDRVEEVKG-KLKEKLVTHKE 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS+KL  +  D+ I I  E L     +   L      LEF  L+  +      ++A 
Sbjct: 244 QAFLSKKLATIVCDMDIAIDWESLKRMQADPAVLRKLYTDLEFRSLLKNLPLPEGEESAE 303

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                 + N   NK   +     ++T        S+  Q                     
Sbjct: 304 AVLFAKEGNEPPNKQAVLAKGSTKETD------GSIDVQVDAP----------------- 340

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGS-----ASFKIITDTMDAFHSKPIAIAIST 413
                 N SY K+ +     + + +L  +G       +     +           +A++ 
Sbjct: 341 -----LNVSYQKVEDEGQRDEMLAELMRLGQEPGYRTAILAAWEG-PPRKGLLKQMALAV 394

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             +      +V  +                     I +  K F+ +E   K+ +++K   
Sbjct: 395 GQEAHPEPPRVWVVDDPGP----------------IFAEAKPFWSSEKHRKLFYDVKSLW 438

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           L+  +  + ++G + D ++ +Y+LD   +++ +A +A + + +      ++ K  +P   
Sbjct: 439 LLARQEDVEIQGIDGDGLIGAYLLDPLANNYSLARLAHELIDWKISP--EAGKQVLP--- 493

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  E A      +  L   +  KL  E L  +Y  ++ P+  ++  ME  GI+++ 
Sbjct: 494 ------AEDAALAVAGLFHLTPAMEAKLGEESLGKLYRDVELPLAPILGSMEWIGIKVNP 547

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L+ ++ E++ ++  L+  I++L+GE FN++S +Q G ILF KL  P   +TKTG + T
Sbjct: 548 KVLQDMAGELNSDIQKLQAEIHELAGETFNINSTQQFGKILFEKLGLPVIKRTKTG-YST 606

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + LE+++   +PI+  +LE+RQL K+KSTY + L   I+    R+HT ++ + T TGR
Sbjct: 607 DVEVLEELS-DRHPIVPKVLEFRQLMKLKSTYVEGLLPLIDGPEGRIHTSFNQSVTATGR 665

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIP++ + G+ IR+AFI+P P   L++ADYSQIELRILAH++        F
Sbjct: 666 LSSTEPNLQNIPVRLEQGRHIRKAFIAPEPGWTLLAADYSQIELRILAHLSDDPSFKDAF 725

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
             + DIH   A+E+F V +  V+ +MRR AK +NF I+YGIS F L+  L + R EA +Y
Sbjct: 726 AKNQDIHTRTASEVFDVPMGNVTREMRRRAKAVNFGIVYGISDFGLSRDLGVTRGEAKEY 785

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF R+ G+  YI++     RQ G+V T+ GRR    ++       +N  ER A+N P
Sbjct: 786 IEGYFRRYHGVRGYIDRIIAEARQQGFVTTLLGRRRRLPDLFVKNKIRQNFGERTAMNTP 845

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AM+ + K+L+DH L T+MLLQ+HDEL+FEVPEEE+T  + +I   MEK 
Sbjct: 846 IQGTAADIIKAAMVKIPKALKDHGLKTRMLLQVHDELIFEVPEEELTVVAPLIKRIMEK- 904

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               I + VPL V++K   NW +
Sbjct: 905 ---TIEISVPLTVDVKKGANWYD 924


>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
 gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
          Length = 917

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/991 (32%), Positives = 512/991 (51%), Gaps = 106/991 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   L LVDG    YRA++A P       G P + + GF +ML ++L +   +    + 
Sbjct: 5   SRRPRLVLVDGHGLAYRAYHALPPTLATSAGEPTHVVFGFASMLLEVLNDFEPD----YV 60

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    +FR ++Y +YKA+RP+ P+ L  QL  +R    A GIP +  +G+EADD+I
Sbjct: 61  IVCFDT-GRSFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPP 176
            T    A   G  V I++ D DL+QLV     +    ++        D + VI+++G PP
Sbjct: 120 GTLAARATANGLEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++   +AL GD  DNIPG+PGIG KTA  L+Q + +LE +L     ++           
Sbjct: 180 ERLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEMLDRIDEVEP---------- 229

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                            PRL   L+A   T L +R   T   DA
Sbjct: 230 ---------------------------------PRLREALRAARETVLASRRLATIVRDA 256

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                + LD+          E  +      +  +F SL  +  +      P++   +   
Sbjct: 257 ----DITLDLEQARFGDFDRERVLQ---LFRELEFRSLVPRLPQ------PRQPVRKTAA 303

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             SQ          ++   D+   V+ LET  + +  + T  +   ++  + IA++T   
Sbjct: 304 PASQRRA-------VLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPD 356

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++ L   T           +++L  L  F  +    +  H+ KYD LVL
Sbjct: 357 RS--------YYVPLGHTTG----DTQLDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVL 404

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDK 532
            R G      + D M+ +Y+L  G ++  +  +A   L +  +E   ++   K  + +D+
Sbjct: 405 ERAGFPRPHIDFDTMIAAYLL--GENAVGLKELAFTKLGWEMEEITELIGRGKKQLTMDR 462

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              ++V ++A  +     +L  +LRP+L     L ++  ++ P+IDV+  ME  GI ID 
Sbjct: 463 AEIARVTQYACADVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDV 522

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L+Q+S  +   L +LE  IY+L+G  FN++SP+QL  +LF +L  P G +TKTG +  
Sbjct: 523 PYLEQLSIMLDGQLHALERRIYELAGHPFNINSPQQLSTLLFDELGLPRGKRTKTG-YSV 581

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE +    +PI++ ILE+RQL K+KSTY D+LP  ++ +T RVHT +      TGR
Sbjct: 582 SQEVLENLR-DTHPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGR 640

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP--PTKK-------LISADYSQIELRILAHIAK 763
           L+S +PNLQNIP + +LG  +RRAFI+   P  +       L+S DYSQIELR++AH ++
Sbjct: 641 LSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQ 700

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + F    DIH   A+E+FGV ++ V+P+MRR AK +NF I+YG+  + LA    +
Sbjct: 701 DPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGM 760

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R +A  +I+ YF RFPG+  Y+E+T+    + GYVET+FGRR +  EI S   + R   
Sbjct: 761 SRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAA 820

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N P+QG+AADI + AMI+VH++L +  L ++MLLQ+HDELV EVPE E+ T +++
Sbjct: 821 ERMAVNMPLQGTAADIMKLAMIAVHRALAERGLRSRMLLQVHDELVLEVPESELATTTEL 880

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   M +     + L VPL+V+ K   NW +
Sbjct: 881 VTTRMSRV----VELSVPLEVDAKAGPNWAD 907


>gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
 gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I
 gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
          Length = 942

 Score =  826 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/987 (32%), Positives = 505/987 (51%), Gaps = 76/987 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG +  YRAF+A      R   G P  A+ GF  +L   L   R +    + AV F
Sbjct: 6   LVLVDGHALAYRAFFALRESGLRSSRGEPTYAVFGFAQILLTALAEYRPD----YAAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++Y +YKA R + PE   PQ   ++   QA  IP    +G+EADD+I T  
Sbjct: 62  DV-GRTFRDDLYAEYKAGRAETPEEFYPQFERIKQLVQALNIPIYTAEGYEADDVIGTLA 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTC------LYDTVKEEKIDIEHVIKKW-GIPPEK 178
             A + G    I++ D D++QLV+                    D+E V K++ G+ P++
Sbjct: 121 RQATERGVDTIILTGDSDVLQLVNDHVRVALANPYGGKTSVTLYDLEQVRKRYDGLEPDQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  L+ L GD+ DNIPG+ GIG K A  LL+++ +L+ +L        K+ +  + E AE
Sbjct: 181 LADLRGLKGDTSDNIPGVRGIGEKGAIALLKQFRSLDALLEQID-AAPKRYQTLLREQAE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            AR SR+L  + TDVP+ + LE   +   +   +++  + LEF    N +        A 
Sbjct: 240 AARFSRQLATIVTDVPVQLDLEAARIGVYDRSAVMALFQELEFGVSSNLIKKLPSVVQAP 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                              T  +    +  +  ++   Q S    E  P +   E     
Sbjct: 300 -------------------TLAELPADLPAAPLTTAPTQLSLFAGESEPAQPTAEPPPV- 339

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                     T + +   +   V +L    + +F     ++    S  + I+I+      
Sbjct: 340 ----------TIVRDATALADLVSRLRNAPAFAFDTECTSLQPVASDLVGISIAIAPD-- 387

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I +   +            E+++ L  FF N    K  HN K+D  VL  
Sbjct: 388 ------TVCYIPVGHQSE-----TQVPCGEVVTALAPFFANPQQPKFAHNAKFDMEVLAG 436

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-----KEILKSRKSSIPIDK 532
            GI + G   D M+ + +L        +  +A   L         ++++      I   +
Sbjct: 437 AGIKVSGLAFDTMIAAAMLG---KRQGLKDLAFYELKLPEPPTTIEDLIGRGNKQISFAE 493

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQID 591
           +   Q   +A  ++   L+L   L+ +L  E  LH +Y R++ P+I+V++ ME+TGI++D
Sbjct: 494 VPVEQAAPYAAADALYTLRLTERLQRQLEAEPALHDLYYRVELPLIEVLTDMELTGIRLD 553

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS----GAKTKT 647
           Q+ L+++    ++ +  L E IY  +G  FN++S +QL D+LF +L         +K K+
Sbjct: 554 QEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDVLFGRLGIDPRAHGLSKLKS 613

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G +  TA+ LE+++    PI  +IL +RQL+K+KSTY D+LP+ +N RT R+HT Y+   
Sbjct: 614 GGYSITAEVLEELS-QLYPIAADILTYRQLTKLKSTYIDALPDLVNPRTGRIHTSYNQLG 672

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+S  PNLQNIP++T+ G++IRRAF++ P  + ++ADYSQIELR+LAH++    L
Sbjct: 673 AATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENL 732

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F+  LDIH   A+ +FGV    V    RR AKT+ F +IYGIS F LA +L I R  
Sbjct: 733 IAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIERDL 792

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A   I   F +FPGI  YI++T  F RQ+GYV+T+FGRR   +++ +  +         A
Sbjct: 793 ARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLRASGARRAAAER-EA 851

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAPIQG+AAD+ + AM++VH++L +  L T++LLQ+HDEL+ E PE+E+  A++++   
Sbjct: 852 INAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEAPEDEVEPAARLLRDV 911

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M        +L VPL VN++V  NW E
Sbjct: 912 MSSVYR---DLVVPLSVNLEVGPNWDE 935


>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265]
 gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
          Length = 940

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/984 (33%), Positives = 499/984 (50%), Gaps = 80/984 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  LFL+DG + +YRA YA      +   G P  A+ GF + L K+ +         + A
Sbjct: 26  KPSLFLIDGMALLYRAHYALQRSGMQNRSGQPTGALFGFLSTLLKIFETYHPG----YLA 81

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR+++Y  YKANR   PE +L Q+  +    +A GIP ++  G+EADD+I 
Sbjct: 82  AAFDSREKTFRHDLYDQYKANRQAPPEDMLAQIEPLFKLLEALGIPILKTPGYEADDLIG 141

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEK 178
           +   + E +   + I++ DKDL QLV     +    K +     +  E + +++G+PP +
Sbjct: 142 SAARLFEDQ-CNIFIVTPDKDLAQLVHGGVSMLRPTKNDSELQLLTPEGIAEQFGVPPAQ 200

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                 LTGD+ DNIPG  GIG KTAA LL  +G+LEN+      I  K  R ++ E+  
Sbjct: 201 FTQFLTLTGDTSDNIPGAKGIGPKTAATLLGRFGSLENVYEKLEEIAPKT-RASLEEFRS 259

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              L   LV +RTD+ + + L+ L         +++ LK LE   +  R+   +      
Sbjct: 260 RLPLITDLVTIRTDLELPVTLQELACTTPESNAILALLKELELKTIARRLPDAFPGFDTA 319

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
              +       ENK                 +  +L D     +                
Sbjct: 320 ENALAEGTEAPENK-----------------ENDALGDPREGSD---------------- 346

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I   +++   V +L      +    T ++    ++   I++S      
Sbjct: 347 ---------YRMISTEEEVSSLVAELMKATLVAVDTETTSLKTCEAELAGISLSATPATA 397

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                  T                    ++ +  L+   EN    K G N+KYD LVL  
Sbjct: 398 SFISFARTG----------------LSREKTIELLRPLLENPAIAKTGQNLKYDLLVLKN 441

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           YG+ +     D ML SY+L+   ++H++  +A + L        E+  + K+ + ID + 
Sbjct: 442 YGLELSPISFDTMLASYLLNP-ETTHNLDDLAARHLKLRTTKYDELTGTGKTKLHIDDVE 500

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             ++ ++A +++++ L+L  +L+ +L  E  L H+ E L+ P+I V+  ME  GI ID  
Sbjct: 501 PRKLTDYACQDADIALRLTAILQKELAEEPNLRHIGETLEFPLISVLGAMESQGISIDTR 560

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S  +   LL L+E I+  +GE FN+ SPKQL  ILF  L  P+   TKTG + T 
Sbjct: 561 HLAATSESVGTQLLQLKETIHSAAGESFNIDSPKQLSRILFEVLGLPTKKTTKTG-FSTN 619

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++    +P++ N+LE+R L KIK+TY D+LP  +N RT RVHT ++   T TGRL
Sbjct: 620 VEVLEEL-APLHPVVGNLLEYRSLQKIKTTYIDALPKMLNPRTGRVHTSFNQHITATGRL 678

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIPI+T LG++IR+AFI   P   L+SADYSQIELRI A I+    L + F 
Sbjct: 679 SSSNPNLQNIPIRTPLGREIRKAFIPTDPRNLLLSADYSQIELRIAAEISGDGKLIEAFR 738

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N  DIH   A  IF      ++P MRR AK +NF ++YGI PF L+ +L IPRSEAAD I
Sbjct: 739 NREDIHSATARVIFDTP--DITPDMRRKAKEVNFGVLYGIQPFGLSKRLNIPRSEAADII 796

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             Y  ++PG+ E ++  K   R+ G+V T+ GRR +   ++S   +++   ERAA+N PI
Sbjct: 797 STYTAKYPGLFEALDTIKTTGREKGFVTTLLGRRRYLPNLSSRNGNLQKAAERAAMNTPI 856

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI   K +++H + + MLLQ+HDELVFE   EE    S ++  +M +A 
Sbjct: 857 QGTAADIIKCAMILCSKRMKEHDMQSSMLLQVHDELVFETTPEEQENLSALVEEAMIEAA 916

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                  VP++V+     NW E +
Sbjct: 917 GMCGMKTVPVEVDCGTGKNWLEAH 940


>gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 915

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/987 (31%), Positives = 517/987 (52%), Gaps = 96/987 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   + L D S+ ++RAF+A      L+ +  G   +A+ GF N+L K+L + R E  
Sbjct: 10  MTK-PVIALFDASALVHRAFHAFKTGNPLTVRRTGEITSAVFGFTNILLKVLADLRPE-- 66

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             ++A+ FD    TFR+E+   YKA+RP+ P  L+ Q+  VR    AFGIP  E+ G+EA
Sbjct: 67  --YYAIAFDRKEKTFRHELSEAYKAHRPETPPELIAQMKRVRQLVDAFGIPVFELPGYEA 124

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKK 171
           DD++    + +   G AV I++ D D MQLV     +               D + V++K
Sbjct: 125 DDLLGVLAHRSAGAGAAVVIVTGDADAMQLVDDDIKVLYPKAGGTFSDTRLYDADAVVEK 184

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +G+PP  +   +AL GD+ DNI G+PGIG KTA  LL E+G+++ I  N   ++ +K RE
Sbjct: 185 FGVPPRLVADFKALVGDASDNIKGVPGIGRKTAVKLLNEFGDIDAIYENIELVRPEKLRE 244

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +      AR S KL ++ TD+P+   LE   +               +   L+  +   
Sbjct: 245 LLRREEAAARESLKLAIIVTDLPVDFDLERCHVG---------LFDREKVIPLLQEL--- 292

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                                 +F SL ++  +  +        
Sbjct: 293 --------------------------------------EFGSLINRLPQNGAPVPAVVET 314

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             +L+           Y  +   ++I+   ++L   G  +    T  +DA  +  + +++
Sbjct: 315 RNQLE---------CRYRLVTTDEEIKTLAERLAGAGRFALDTETTGLDALSADLVGLSL 365

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +    +          ++ +     +   G+   T E+  YL     +    KI HN KY
Sbjct: 366 APAAGEG--------YYLPVGHSGVE---GRQWTTDELKRYLGPVLADVGIGKIAHNAKY 414

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSS 527
           D  +L   G+ + G + D ML +++L  G SS  +  +A   L         ++   +  
Sbjct: 415 DLHILAGAGLLVAGLDFDTMLAAHLL--GESSLSLKGLAFNRLGIEMTPITALIGEGRHQ 472

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
             I      +  ++A  ++++ L+L+ LL P+L  E    +++ ++ P++ V+  ME  G
Sbjct: 473 KCISTCGLRETADYACADADMTLRLYQLLLPELEKENQSRLFDEVEMPLVPVIMDMEAAG 532

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I +D  +L  +SA + + L  +E  IY+ +   FN++SP+QLG++LF +LK P G KT++
Sbjct: 533 IAVDVTILSAMSARLGRQLTEIEAAIYEQANRPFNIASPRQLGEVLFEELKLPVGRKTRS 592

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G ++T A  LE +   ++ I++ ILE+R L+K+KSTY D LP  ++ R  R+HT ++ A 
Sbjct: 593 G-YRTDAAVLEGLK-DEHEIVRLILEYRTLAKLKSTYVDILPAMVSARDGRLHTSFNQAR 650

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++   G++IR+AF++PP   L++ADYSQI+LR LAH++  + L
Sbjct: 651 TATGRLSSSDPNLQNIPVRGQYGREIRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSAL 710

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH   A  ++G+  ++++P+MRR AKT+NF +IYG+S + L     + R E
Sbjct: 711 IAAFNAEEDIHTATAMSLYGLPRDEITPEMRRFAKTVNFGVIYGMSGYGLEQATEMSREE 770

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           +  +I+ YF R+PG+  Y+  TK   R  GYVETI GRR +  +IN+    +R   ER A
Sbjct: 771 STRFIQTYFERYPGVRAYLNLTKEQARSRGYVETILGRRRYIPDINAANRQVREAAERMA 830

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           IN P+QG++ADI + AM+ V + ++   L +++LLQ+HDEL+FEVP+ E+   S++    
Sbjct: 831 INMPVQGTSADIIKVAMLEVRREMDSQGLESRLLLQVHDELIFEVPQAELMFMSELASRR 890

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M  A    + L+VPL+V+IK   NW E
Sbjct: 891 MSAA----VELKVPLRVDIKYGANWGE 913


>gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
 gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
          Length = 950

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/983 (35%), Positives = 533/983 (54%), Gaps = 72/983 (7%)

Query: 11  DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV 70
           DGS+FI+RA++A P LS    G P NAI GF +ML  L+    K+    + A + D    
Sbjct: 23  DGSNFIFRAYHALPPLST-STGTPTNAIRGFLSMLRVLM----KDVPTDYVACVVDPKGK 77

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           TFR++IYPDYKANRP +PE L  Q+PL+    Q  GIP ++I G EADD I T T  A  
Sbjct: 78  TFRSDIYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIPGIEADDTIGTLTKKAVA 137

Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVCLQALTGD 188
           EGF V I + DKD  QLV+    L +T+ ++   ++ E V KK+G+PPEK++   AL GD
Sbjct: 138 EGFNVVIATGDKDFAQLVNDNVLLVNTMGKDNSWLNSEGVEKKFGVPPEKIIDFLALMGD 197

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
            IDN+PG+P  G KTAA  + E+G+++ ++ NA ++K  K  EN+        ++R+LV 
Sbjct: 198 KIDNVPGVPKCGEKTAAKWITEFGSVDGVIENAEKVKG-KIGENLRSALGFLPIARQLVT 256

Query: 249 LRTDVPIT---IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           ++TD  ++     LE L L+  N   L+ +   LEF      +  T          V  +
Sbjct: 257 IKTDADLSAEVPSLESLKLKTPNRTELLDYYNKLEFRSWAKELKKT---------DVPGE 307

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
           +   E    A +        ++       S +                      Q     
Sbjct: 308 VKPLETSTTAQKRAAVGAAPVEGDTLDLFSQE----------------------QESETE 345

Query: 366 DSYTKIVNTKDIQQW---VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +   I +    ++    ++ L T     F ++ D        P+ +A  T D K     
Sbjct: 346 RTLEIITDKAKAKELAAHLEDLVTKDGFEFYVLADGSSQQEYMPVGVAFGTTDGK----- 400

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
              T ++ +    +     +            +  E++  +K G++ KY K V    GI+
Sbjct: 401 ---TSYVPI---DNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKYMKHVFANVGIN 454

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQV 538
           + G  +D+ML SYVL++ RS H I  +A  WL Y     +E+L      +   ++S  + 
Sbjct: 455 LAGVSDDVMLESYVLEAHRS-HTIEKLAANWLKYELRGEEELLGKGAKKLSFSQVSVEKA 513

Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            E A E   ++ +L  L +  L  + KL  +Y  ++ P+ DV+ +ME  G+ ID  LL Q
Sbjct: 514 AEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSDVLFKMEQNGVLIDTKLLDQ 573

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP----SGAKTKTGQWKTT 653
            +A+++     LEE  ++++GE F LSSPKQLG+ILF K+          KT +G + T+
Sbjct: 574 QTAQLNTKARELEEQAFEVAGENFKLSSPKQLGEILFDKMGVVLEGAKPKKTISGNYSTS 633

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L ++   + P+ K  LE+R ++K+ +TY + LP  ++ +  RVHT +  A  +TGRL
Sbjct: 634 EEVLSEL-AENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFEQAVAVTGRL 692

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S  PNLQNIPI+T+ G+K+R AFIS    KLISADYSQIELRI+AH++    L + F+N
Sbjct: 693 SSTNPNLQNIPIRTEEGRKVREAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKN 752

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIHR  AAE+FG   +KV+P  RR AK INF ++YG+SPF LA  L I R EA +YI 
Sbjct: 753 NEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMYGMSPFGLAKNLGIGRDEAKNYIN 812

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           ++F RFPG+H+Y+E+T+    + GYVET FGRR+   EI++  +        AAINAP+Q
Sbjct: 813 KFFARFPGVHDYMERTRALADRQGYVETTFGRRLWLPEIHAGGARRAAAER-AAINAPMQ 871

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AAD+ + +MI+V K +E+  L +K++LQIHDEL+ EVPE E+    + +   M+    
Sbjct: 872 GTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIMDSVT- 930

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
               L VPL   + V +NW+  +
Sbjct: 931 ---ELHVPLIAEVGVGDNWEAAH 950


>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/991 (32%), Positives = 511/991 (51%), Gaps = 106/991 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   L LVDG    YRA++A P       G P + + GF +ML ++L +   +    + 
Sbjct: 5   SRRPRLVLVDGHGLAYRAYHALPPTLATSAGEPTHVVFGFASMLLEVLNDFEPD----YV 60

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    +FR ++Y +YKA+RP+ P+ L  QL  +R    A GIP +  +G+EADD+I
Sbjct: 61  IVCFDT-GRSFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPP 176
            T    A   G  V I++ D DL+QLV     +    ++        D + VI+++G PP
Sbjct: 120 GTLAARATANGLEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++   +AL GD  DNIPG+PGIG KTA  L+Q + +LE +L     ++           
Sbjct: 180 ERLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEMLDRIDEVEP---------- 229

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                            PRL   L+A   T L +R   T   DA
Sbjct: 230 ---------------------------------PRLREALRAARETVLASRRLATIVRDA 256

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                + LD+          E  +      +  +F SL  +  +      P++   +   
Sbjct: 257 ----DITLDLEQARFGDFDRERVLQ---LFRELEFRSLVPRLPQ------PRQPVRKTAA 303

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             SQ          ++   D+   V+ LET  + +  + T  +   ++  + IA++T   
Sbjct: 304 PASQRRA-------VLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPD 356

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++ L   T           +++L  L  F  +    +  H+ KYD LVL
Sbjct: 357 RS--------YYVPLGHTTG----DTQLDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVL 404

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDK 532
            R G      + D M+ +Y+L  G ++  +  +A   L +  +E   ++   K  + +D+
Sbjct: 405 ERAGFPRPHIDFDTMIAAYLL--GENAVGLKELAFTKLGWEMEEITELIGRGKKQLTMDR 462

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              ++V ++A  +     +L  +LRP+L     L ++  ++ P+IDV+  ME  GI ID 
Sbjct: 463 AEIARVTQYACADVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDV 522

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L+Q+S  +   L +LE  IY+L+G  FN++SP+QL  +LF +L  P G +TKTG +  
Sbjct: 523 PYLEQLSIMLDGQLHALERRIYELAGHPFNINSPQQLSTLLFDELGLPRGKRTKTG-YSV 581

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE +    +PI++ ILE+RQL K+KSTY D+LP  ++ +T RVHT +      TGR
Sbjct: 582 SQEVLENLR-DTHPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGR 640

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP--PTKK-------LISADYSQIELRILAHIAK 763
           L+S +PNLQNIP + +LG  +RRAFI+   P  +       L+S DYSQIELR++AH ++
Sbjct: 641 LSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQ 700

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + F    DIH   A+E+FGV ++ V+P+MRR AK +NF I+YG+  + LA    +
Sbjct: 701 DPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGM 760

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R +A  +I+ YF RFPG+  Y+E+T+    + GYVET+FGRR +  EI S   + R   
Sbjct: 761 SRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAA 820

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N P+QG+AADI + AMI+VH+ L +  L ++MLLQ+HDELV EVPE E+ T +++
Sbjct: 821 ERMAVNMPLQGTAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTTEL 880

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   M +     + L VPL+V+ K   NW +
Sbjct: 881 VTTRMSRV----VELSVPLEVDAKAGPNWAD 907


>gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 957

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/996 (37%), Positives = 548/996 (55%), Gaps = 75/996 (7%)

Query: 6   HLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            L LVD SSF++RA++ +        +R  DGLP  A   F   L++ +++     + +H
Sbjct: 12  RLILVDASSFVFRAYHQSLNQDPKYNARPSDGLPTGAARLFFAKLFQFVRDGAAGVVPTH 71

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             ++FD  +  + R ++YP+YKANR + P  L PQ+PLVR A +AFG+P IE+   EADD
Sbjct: 72  LGIVFDKGSRESHRRQLYPEYKANRSETPADLRPQMPLVREAVRAFGLPVIELDRTEADD 131

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHVI 169
           +IATY   AE +G  V I+S DKDL QLVSP    YD             E  +D+E V+
Sbjct: 132 LIATYARAAEAKGAEVVIVSADKDLQQLVSPRIRFYDAESGSKGKPGYRPERNLDVEAVV 191

Query: 170 KKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            KW G+ P ++    AL GD+ DNIPG+PGIG KTAA LL EYG+LE +L  AS IKQ K
Sbjct: 192 AKWEGLQPGQIGDALALIGDTSDNIPGVPGIGLKTAAQLLLEYGSLEALLEGASAIKQPK 251

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           RREN+L  AE ARLSR+LV L   V + +  + L L   +G RL+++LKALE   L  RV
Sbjct: 252 RRENLLAAAEGARLSRRLVELDCSVDLPVDPDTLALPAPDGRRLVAYLKALELPALAKRV 311

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
           A     DA  + P                              + L+   +       P 
Sbjct: 312 AKELGVDADRVPPD-----------------------------AELAASPTTAPGADGPV 342

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
                          + D+Y  +    D+  W+      G          +    +  I 
Sbjct: 343 MPPFPAA--------DPDAYGLVATQDDLDGWIAAARAAGRFGL-----HLHRGDAGAIG 389

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463
           + I+    +         +++ +      D         +I        +    E+    
Sbjct: 390 LGIAVEPGR--------AVYVPIEHRAGGDGLFGGLAPGQIDAAAAWGAVGALMEDAGVR 441

Query: 464 KIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---I 520
           KI H++K       R G  + G +D+ LMSY L+SG + H +  +A + L     +   +
Sbjct: 442 KIVHDLKGTAKAAGRLGFEIAGADDVGLMSYALESGLTGHGLPELAARHLGNAAPDPDAL 501

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
               +  +  + ++       A + ++ +L+LW +L P+L       VYE L+ PM+ V+
Sbjct: 502 RGQGRGRVDAEAVAPRAAAPVAAQIADAVLRLWTVLAPRLEGTPTQAVYEELELPMVPVL 561

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++ME  G++ID+ +L ++S +    L  LE  I++L G  F + SPKQ+GD+LF +L  P
Sbjct: 562 ARMEAAGVRIDRAVLTELSRDFGATLARLETEIHELGGGPFQIGSPKQIGDVLFGRLGLP 621

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
            G +T +GQW T A  LE++    + +   +L+WR+ SK+KSTYAD+L +  ++ T RVH
Sbjct: 622 GGRRTPSGQWATGATILEELAAAGHALPGRLLDWRRTSKLKSTYADALLSAADRGTDRVH 681

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T +SLA+T TGRL+S +P L NIPI+T+ G++IR AF++    +++SADYSQ+ELR+LAH
Sbjct: 682 TTFSLAATTTGRLSSSDPGLHNIPIRTEEGRRIRAAFVAAEGHRILSADYSQVELRLLAH 741

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           IA +  + + F   +DIH   A+++FGV +  V  ++RR AKTINF I+YGIS F LA +
Sbjct: 742 IADVPRMREAFAEGVDIHAATASDMFGVPVGAVPGELRRRAKTINFGIVYGISAFGLADR 801

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I R EAA++I RYF RFPGI +Y+E TK F R++G+V T+FGR  HY  I S   S R
Sbjct: 802 LGIGRQEAAEFIARYFERFPGIRDYVEGTKTFCREHGFVRTLFGRVCHYPGITSGNVSER 861

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+NAPIQG+AADI RRAMI +  +L D  L+ +MLLQ+HDELVFEV E E    
Sbjct: 862 MGVERQAVNAPIQGTAADIIRRAMIRMEGALADSGLSARMLLQVHDELVFEVAEAECADT 921

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ++++   M  A  P I+L VPL V  + + NW+  +
Sbjct: 922 ARVVSDVMAGAAAPDIDLAVPLVVEARSAENWERAH 957


>gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1]
 gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1]
          Length = 875

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/982 (34%), Positives = 518/982 (52%), Gaps = 119/982 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML K++ +       +H  V
Sbjct: 2   KKKLVLIDGNSIAYRAFFALPLLNNDK-GVHTNAVYGFTTMLQKIMTDEE----PTHILV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q P +R    A+ IP  E++ +EADDII T
Sbjct: 57  AFDAGKTTFRHKTFGEYKGGRQKTPPELSEQFPYIRELLDAYQIPRYELENYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  AEK+G+ V IIS DKDL QL S TT +  T K     E    EH+++KW I P+++
Sbjct: 117 LSLQAEKDGYEVKIISGDKDLTQLSSETTTVGITRKGITDIEVYTPEHIMEKWEITPDRI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GDS DNIPG+PG+G KTA  LL+++G +E +L +   +  KK +E + E+ + 
Sbjct: 177 IDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFGTIEKLLESIDEVSGKKLKEKLEEHKDQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S++                          L + L+                   A I
Sbjct: 237 AVMSKE--------------------------LATILRE------------------API 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  V ++N   +       +       K   FSSL ++  +   E               
Sbjct: 253 EVTVEELNYEGSD------DKKLKAFFKELGFSSLLEKMGETVEED-------------- 292

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              + + SY  +   K      + LE   S   +++ D  + F+ + + I++        
Sbjct: 293 -QDLQDVSYEILSEVKK-----EHLEEDSSLYVEVMED--NYFNGEIVGISMRNGSGN-- 342

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   F  L    + D+              KK+  +E   K  ++ K   + L R 
Sbjct: 343 -------YFFTLETALASDA-------------FKKWAADEKMKKSVYDAKRSIVALRRQ 382

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKIS 534
           G+ + G   D++++SY+L+   S+ D A +A+K     +        K  K  +P     
Sbjct: 383 GVELTGVEFDLLIVSYILNPAESADDFAGVAKKHGASVIESDEAVYGKGAKRKVP----E 438

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           + ++ EH    +NV+ +L       L       ++  L+ P+  +++ ME TG+ +D D 
Sbjct: 439 EEKLAEHLARKANVVYELKSTCEEALKENDQYQLFTDLELPLAIILADMEYTGVGVDVDR 498

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK++ +E+++ L  +E+ IY+L+GE+FN++SPKQLG ILF KL+ P   KTKTG   +T+
Sbjct: 499 LKEMKSELAERLDEMEKKIYELAGEEFNINSPKQLGVILFEKLELPVIKKTKTGY--STS 556

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     + II +IL +RQL K++STY + L   I++ + +VHT ++ A T TGRL+
Sbjct: 557 ADVLEKLQSKHEIIDHILHYRQLGKLQSTYIEGLLKVIHEDSNKVHTRFNQALTQTGRLS 616

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AFI       + +ADYSQIELR+LAHIA    L   F  
Sbjct: 617 STDPNLQNIPIRLEEGRKIRQAFIPSEKNWLMFAADYSQIELRVLAHIAGDEKLIHAFNE 676

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++F V+ + V+  MRRHAK +NF I+YGIS F L+  L I R EA ++I+
Sbjct: 677 GMDIHTKTAMDVFHVDADSVTSNMRRHAKAVNFGIVYGISDFGLSQSLGITRKEAGEFIQ 736

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RY   +PG+ EY++   +  +QNG+V+T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 737 RYLDSYPGVQEYMDDIISEAKQNGFVKTLLQRRRYIPEITSRNFNLRSFAERTAMNTPIQ 796

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE   L T++LLQ+HDEL+FE PE+EI    +I+   ME A  
Sbjct: 797 GSAADIIKKAMIDMAARLEKENLQTRLLLQVHDELIFEAPEDEIERLKEIVPEVMENA-- 854

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + L VPLKV+      W + 
Sbjct: 855 --VELEVPLKVDYSYGPTWYDA 874


>gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70]
 gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70]
          Length = 878

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/982 (34%), Positives = 507/982 (51%), Gaps = 116/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L+  +     +H  V
Sbjct: 2   KKKLVLIDGNSIAYRAFFALPLLHNDK-GIHTNAVYGFTMMLMKILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R + P  L  Q PL+R    A+ I   E++ +EADDII T
Sbjct: 57  AFDAGKTTFRHKTFEEYKGGRQQTPPELSEQFPLLRELLDAYRIRFYELENYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AEKEGF V +IS D+DL QL S    +  T K     E    E V +K+G+ PE++
Sbjct: 117 LCTKAEKEGFEVKVISGDRDLTQLASDHVTVDITKKGITDVESYTPETVQEKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PGIG KTA  LL+E+G +ENIL +  ++   K REN       
Sbjct: 177 IDLKGLMGDKSDNIPGVPGIGEKTALKLLKEFGTIENILDSIEQVSGNKLREN------- 229

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L       L+++   T   DA   
Sbjct: 230 ------------------------------------LAKYRDIALMSKQLATILRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L +   E  G  ++  I      K   F+SL ++ +    E+             +
Sbjct: 251 -PVDLSLEDIEYNGYDVDKVI---ALFKELGFNSLLEKMAAPQGEEE------------T 294

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  +++  Y  IV+         +       +  +     +   +  +  AI+       
Sbjct: 295 EVALSDIDY-TIVDEVTESILSDEA------ALVVEVLESNYHKAPILGFAIA------- 340

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                              +    T T    S   ++ E+E   K   + K   + L   
Sbjct: 341 ---------------NEHGNFFIRTDTALSSSLFTQWLEDESKKKSVFDGKRAIVSLKWQ 385

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPIDKIS 534
           GI +RG   D+++ SY+L+  +S+ D+ASIA+  ++      E    K  K  IP + + 
Sbjct: 386 GIQLRGVQFDLLIASYLLNPSQSTEDVASIAKTKQYTDVQSDEAIYGKGAKQKIPDEPV- 444

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + EH +  +  I  L       L   +   ++  L+ P+  ++++ME TG++ID   
Sbjct: 445 ---LAEHLVRKAAAIRALEQDFICDLQENEQYSLFTDLELPLSSILAEMEFTGVKIDVKR 501

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK++  E+++ L  +E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+
Sbjct: 502 LKEMGEELTEQLKEIEQEIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STS 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            ++ +     + I++ IL +RQL K++STY + L   ++  T +VHT ++ A T TGRL+
Sbjct: 560 AEVLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHHDTNKVHTIFNQALTQTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIPI+ + G+KIR+AF+   P   + SADYSQIELR+LAHIA    L   F +
Sbjct: 620 STEPNLQNIPIRLEEGRKIRQAFVPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRH 679

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IF VN ++V+P MRR AK +NF I+YGIS + L+  L I R EA+++IK
Sbjct: 680 DLDIHTKTAMDIFHVNEDEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNITRKEASEFIK 739

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+ +Y++      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 740 RYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQ 799

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   L+   +  +MLLQ+HDEL+ E P+EE+    QI+   ME A  
Sbjct: 800 GSAADIIKKAMIDLSNRLKKENMKARMLLQVHDELILEAPKEEVERLQQIVPEVMENA-- 857

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + LRVPLKV+      W + 
Sbjct: 858 --VQLRVPLKVDYHFGPTWYDA 877


>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
 gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
          Length = 878

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/982 (34%), Positives = 515/982 (52%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L+  +     +H  V
Sbjct: 3   KRKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLMKILEEEK----PTHMLV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q PL+R    A+ I   E++ +EADDII T
Sbjct: 58  AFDAGKTTFRHKTFEEYKGGRQKTPPELSEQFPLLRELLNAYQIRFYELENYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE EGF V +IS D+DL QLVS    +  T K     E    E V +K+G+ P+++
Sbjct: 118 LCAKAENEGFEVKVISGDRDLTQLVSDHVTVDITKKGITDVESYTPETVREKYGLAPQQI 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PGIG KTA  LL+E+G++ENIL +  +I   K +EN+ ++   
Sbjct: 178 IDLKGLMGDKSDNIPGVPGIGEKTALKLLKEFGSIENILDSIEQISGNKLKENLEKH--- 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
               R L                                     L+++   T   DA   
Sbjct: 235 ----RDLA------------------------------------LMSKQLATILRDA--- 251

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ L     E +G  ++  I      K   F+SL D+ +    E+T   L   R +   
Sbjct: 252 -PIDLSFEDIEYRGYDVDKVI---ALFKELSFNSLLDKMAPQEEEKTAVALPKIRYE--- 304

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I ++    I++ +              A+  +     +   +  +  AI+       
Sbjct: 305 ---IVDEVTEAILSDE--------------AALVVEVLESNYHKAPILGFAIA------- 340

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                              +    T T    S    + E+E   K   + K   + L   
Sbjct: 341 ---------------NEHGNFFIRTDTALSSSLFTTWLEDESKKKSVFDGKRAIVSLKWQ 385

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPIDKIS 534
           G+ +RG   D+++ SY+L+  +S+ D+ASIA+  ++      E    K  K  +P +++ 
Sbjct: 386 GVHLRGIQFDLLIASYLLNPSQSTEDVASIAKTKQYAGVQSDEAVYGKGAKQKVPDEQV- 444

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + EH +  +  I  L       L   +   ++  L+ P+  ++++ME  G+++D + 
Sbjct: 445 ---LAEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVER 501

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK++  E+++ L  +E+ IY L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+
Sbjct: 502 LKEMGEELAEQLKEVEQEIYRLAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STS 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            ++ +     + I++ IL +RQL K++STY + L   +++ T +VHT ++ A T TGRL+
Sbjct: 560 AEVLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIPI+ + G+KIR+AFI   P   + SADYSQIELR+LAHIA    L   F +
Sbjct: 620 STEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRH 679

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IF V+ E+V+P MRR AK +NF I+YGIS + L+  L I R EAA++IK
Sbjct: 680 GLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIK 739

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+ +Y++      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 740 RYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQ 799

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI + K L+   +  +MLLQ+HDEL+ E P++EI    QI+   ME A  
Sbjct: 800 GSAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENA-- 857

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + LRVPLKV+      W + 
Sbjct: 858 --VQLRVPLKVDYHFGPTWYDA 877


>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
 gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
          Length = 901

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/987 (34%), Positives = 504/987 (51%), Gaps = 98/987 (9%)

Query: 1   MQKENHLF-LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N L  LVDGSS+++RAFYA P L+    G P  A+ G   ML +L  + +      
Sbjct: 1   MLDSNRLVVLVDGSSYLFRAFYALPPLTT-QKGHPTGAMHGVIKMLMRLYDDYQPN---- 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           +FAV+FD    TFR++IYPDYKANRP +PE L  Q+  +     A G P I   G EADD
Sbjct: 56  YFAVVFDAAGKTFRHQIYPDYKANRPPMPEDLAVQIQPLHQLITALGFPLIMESGVEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGI---P 175
           +I T    A  E + V I S DKD+ QL++     L DT+K E I    V K++ I    
Sbjct: 116 VIGTLARQALAEDYQVIISSGDKDMTQLLTHADITLLDTMKNETITASDVAKRFKIEQLT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             +++   AL GD  DNIPG+  +G KTA   L  YG+L+ I                +E
Sbjct: 176 AAQVIDFLALVGDKSDNIPGVEKVGAKTAEKWLATYGSLDAI----------------IE 219

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            A+  R                           G  L + L  L+ ++ +  +  T D  
Sbjct: 220 NADKIR------------------------GKVGDNLRAGLAQLKCSQQLATINQTLDLP 255

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +      N  +   +  + E++                          Q  +L+  
Sbjct: 256 YRIADLARGAENPHKLAALCAQYELNDI------------------------QNRYLKTT 291

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +        Y  I    +     +KL    +  F + TD+++   +  + I+ +   
Sbjct: 292 AVAAPKAPEKLHYHLIQTIAECNALCEKLAQKSAFVFDVETDSLNYMQAHWVGISFAVEA 351

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ L         G N    E L+ LK  FEN    KIG ++K+D+ +
Sbjct: 352 GE--------AWYLPLVHQ-----NGINLPFAETLAALKNLFENASIRKIGQHLKFDRHI 398

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPID 531
           L RYGIS+ G  +D MLMSY  +S  + H++  +A  +L+      ++I  S       D
Sbjct: 399 LARYGISLNGVIDDTMLMSYCYNSTATRHNMDDLADFYLNKQTIRFEDIAGSGAKQRRFD 458

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I      ++A E++++ LQL+   + KL  E  L  +YE +++P+ +++  ME  G++I
Sbjct: 459 EIDLETAMQYACEDADITLQLYQFFQQKLASEPTLQALYENVERPLAEILWAMEHQGVKI 518

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
             D L   S E++  L +L++  Y L+G  FNL SPKQL +ILF +L  P   KT TGQ 
Sbjct: 519 AGDKLAVQSQELAAQLKTLQKQAYQLAGGVFNLDSPKQLQEILFERLALPVIHKTPTGQA 578

Query: 651 KTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            T  + L+++     + + + IL +R L K+KSTY D LP  I+  ++RVHT Y  A T 
Sbjct: 579 STNEEVLQKLAELRQSALPEIILNYRALGKLKSTYTDKLPELIDPDSKRVHTSYHQAVTS 638

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI++D G++IR+AFI+     +++ADYSQIELRI+AH+++   L +
Sbjct: 639 TGRLSSSDPNLQNIPIRSDEGRRIRQAFIAEEGYSILAADYSQIELRIMAHLSQDERLQR 698

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+   DIH   AAE+F V  E V    RR AK INF +IYG+S F LA QL I R++AA
Sbjct: 699 AFQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAINFGLIYGMSAFGLARQLNISRTQAA 758

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +YI +YFHR+P +  Y++  +   +Q GYV T+ GRR++  +I++     R   ER AIN
Sbjct: 759 EYIDKYFHRYPQVLAYMDSARQTAQQQGYVSTLLGRRLYIPDIHNKNMQRRRAAERLAIN 818

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAADI + AM+   ++    K   ++L+Q+HDELVFEV    +      I H ME
Sbjct: 819 APMQGSAADIIKLAMVQFWQTYGAQK-ECRLLMQVHDELVFEVATAALDIWQPRITHIME 877

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
            A    + L VPL V+  VS +W   +
Sbjct: 878 HA----LPLSVPLIVDCGVSKDWDGAH 900


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/985 (31%), Positives = 489/985 (49%), Gaps = 89/985 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+K   ++L+DGS++I+RA++A   L+   DGLP +AI GF   L ++++    E  A H
Sbjct: 1   MKKPPPVYLIDGSAYIHRAYHAITPLTN-RDGLPTHAIYGFTTTLLRVIR----EGEARH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+++YP YKANRP +PE L  QLP ++    A+ I ++E +GFEADD+
Sbjct: 56  LAVVFDARGPNFRHQLYPQYKANRPAMPEDLACQLPYIKEIVAAYRITSLEREGFEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA         G  V I+S DKDL+QLV P    +D + +  +D   V  K+ +PP K++
Sbjct: 116 IAAAGRRLAAAGHRVVIVSGDKDLLQLVGPNITFWDPMGDRLLDAAAVEAKYQLPPAKLL 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GDS DNIPG+PG+G KTA  L++E+G+L+                 +L   E  
Sbjct: 176 DYFALIGDSSDNIPGVPGVGPKTAVKLIKEFGDLDQ----------------LLANLEQV 219

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      + P+L   L       L+ R       D     
Sbjct: 220 ---------------------------SAPKLRQKLADHRDAALLARELIRLKDDLEIPA 252

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                     ++G             K  Q  S  D +  + SE   ++L          
Sbjct: 253 TPEEYRQPEPDRG-------------KLRQLFSQLDFSRLLQSEAAAEEL---------- 289

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              ++ ++  +  T+ +    ++L   G       T +++A  ++ + I++  L      
Sbjct: 290 ---DDSAFQLLTTTEQLPTVCEELRAAGGLVIDTETTSLNALRAELVGISLCPLPAAATA 346

Query: 421 S------FKVETIFIDLSVHTSQDSTGK-NTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           +            ++ +    +  S          +   L     +   LK+GHN+KYD 
Sbjct: 347 ADNSQPTPPPTAWYLPIGHRLADGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDL 406

Query: 474 LVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIP 529
            VL  +G+ +     D M+ SY++D GR SH +  ++ + L        E+    +    
Sbjct: 407 QVLKSHGLELAAPLADSMIASYLIDPGRRSHKLDDLSSELLERQLTSFAEVSAGDRRPEA 466

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +  +    ++ ++      LW L  P+L    L  +   ++  ++ ++++ME  GI 
Sbjct: 467 FAYVEPAAACRYSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLGIL 526

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D  +L ++  E  + L  LE  I +L+GE FN++SP+QLG++L+ +LK P G KTK   
Sbjct: 527 VDPAVLDELEREFGRELARLESKIAELAGESFNINSPRQLGEVLYERLKLPHGRKTKGKT 586

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +T     +     + +   ++  R LSK+KSTY D L   I+    RVHT ++   T 
Sbjct: 587 GYSTDYRELERLAAYHDLPAAVISHRNLSKLKSTYVDKLATLIDPADGRVHTTFNQTVTA 646

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+T  G+++R AF++      ++ADYSQI+LR+LAH +    L +
Sbjct: 647 TGRLSSSNPNLQNIPIRTPEGRRLRAAFVAAAGHLFLAADYSQIDLRVLAHYSGDPVLQE 706

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  DIH   AAEIF VN   VS  MRR AKTINF I+YG+S F LA QLR  R EA 
Sbjct: 707 AFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGMSAFGLAEQLRCSRKEAQ 766

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +I RYF  + G+  ++++     R++G+V T+  RR    EINS     R   ER AIN
Sbjct: 767 TFIDRYFELYQGVLRFMQEIVEQARRDGWVGTLLNRRRPLPEINSGNKMRREFAERTAIN 826

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AADI + A I+  ++L +    ++ LLQIHDEL+FEVP++E+     +I  +ME
Sbjct: 827 TPIQGTAADIIKLAAIACDRALREAGCRSEALLQIHDELIFEVPQDELAQVGPLIRQAME 886

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
           +       L VPL VN+K   N  E
Sbjct: 887 EVM----ELAVPLTVNLKSGPNLSE 907


>gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia
           stuttgartiensis]
          Length = 887

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/974 (34%), Positives = 527/974 (54%), Gaps = 96/974 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
             F++DG S  Y+AFYA        DG P NA+ GF  ML KLL+  R +    + A++F
Sbjct: 4   RFFIIDGHSHCYQAFYAITAKLTTPDGTPANAVYGFTRMLLKLLREQRPD----YLALVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T R++ Y DYKA R + PE L  Q+PL+    +AFGIP    +G+EADD+I +  
Sbjct: 60  DTKYTTNRHQKYSDYKATRKETPEDLQVQIPLIYKVVRAFGIPVYAAKGYEADDVIGSLV 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            + EK+   V I+++DKDL QL+ P   +    K E ID + +  + GI P ++V + AL
Sbjct: 120 TVLEKKEIEVVIVTSDKDLEQLIGPKVKILHAKKGEIIDSDVLFTQKGIMPNQVVDVLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD  DNIPG+PGIG KTA  L++++G+LE++L N   I  KKR+EN+  +A+ AR S  
Sbjct: 180 AGDVSDNIPGVPGIGNKTALDLIKKWGSLESVLANVGHISGKKRQENLRTFADQARFS-- 237

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
                                         L       L   + +       NI+   L 
Sbjct: 238 ---------------------------RELLDLYNDIPLTVDMESCRLSTGENIKLRKLF 270

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
            +   N                    + LSD  +  N+E T                   
Sbjct: 271 RSFGFN--------------------TLLSDMVATANTEAT------------------- 291

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  I   +    +++++    + +  + T   D   +  + ++ S   ++        
Sbjct: 292 -HYYLINTIEQFHGFLEQISKKDAFAIDLETTGTDPLKAHIVGLSFSWEQKE-------- 342

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
             ++ L    +     ++     +L  ++K  E+E   KIG NIKYD LVL ++ I ++G
Sbjct: 343 AYYVPLMAPENT----RHLTADIVLPEIRKVLEDESKKKIGQNIKYDLLVLKKHNIGLKG 398

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541
              D M+ SY+L+  + +H++  IA ++LSY      E++ S K  I +DK+   +V ++
Sbjct: 399 IYFDSMIASYLLNPAKRNHNLDDIAFEYLSYKTIMIAELIGSGKQQITMDKVPVDKVCQY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A +++++  +L   + P L  E L  +++ ++ P+I V+++ME  GI I+ D L+Q+S +
Sbjct: 459 ACQDADITFRLAETMAPLLKKEGLWQLFQEIEIPLIYVLAEMEGNGICINADFLRQMSGD 518

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++  L  LE+ IY ++ ++FN+SS KQLG ILF K + P   +TKTG   +T  ++    
Sbjct: 519 LAAQLQCLEKEIYRVAEQEFNISSHKQLGAILFDKFQLPKLRRTKTG--VSTDANVLASL 576

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              +P+ K  LE+RQL+K+KSTYAD+LPN +N+ T ++HT ++   T TGRL+S  PNLQ
Sbjct: 577 AWRHPLPKLALEYRQLAKLKSTYADALPNLLNQDTGKIHTTFNQTVTSTGRLSSSNPNLQ 636

Query: 722 NIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIP+KTD+G++IRRAFI        +SADYSQIELRILAH ++ T L + F   LDIH  
Sbjct: 637 NIPVKTDIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDTALMEAFREDLDIHAA 696

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           VA+ I+ V +E V+ +MRR+AK INF IIYG++ + L+    +  ++A D+I  YF  + 
Sbjct: 697 VASSIYHVPLENVTTEMRRNAKAINFGIIYGLNEYGLSRDTGLSLNDAKDFIDAYFTLYQ 756

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ E+ +K     ++ GYV+T+F R+    +IN+     RN+ ER AIN  IQGSAAD+ 
Sbjct: 757 GVREFRDKVVEEAKEMGYVKTLFNRKRAIPDINAKNKRFRNLAERIAINTIIQGSAADLI 816

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM +++  L+      +MLLQIHDEL+FEV  + +     ++   M  A    + LRV
Sbjct: 817 KVAMNNIYSKLKCGDYEARMLLQIHDELLFEVGVQALEQTRIMVQEEMGHA----VTLRV 872

Query: 961 PLKVNIKVSNNWQE 974
           P+KVNIK   NW E
Sbjct: 873 PVKVNIKTGKNWME 886


>gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
 gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
          Length = 918

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/980 (32%), Positives = 539/980 (55%), Gaps = 74/980 (7%)

Query: 6   HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            L+L+DG++ +YRA +A    PL++ K  G+  +AI G  N    +L+N++    A++ A
Sbjct: 4   KLYLIDGTALLYRAHFAFIKNPLINSK--GIHTSAIFGVINSFLHILENTQ----AAYVA 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD  A TFR+ +Y  YKA RP +P+ L  Q+  V+   +  G+  I + G+EADDI+ 
Sbjct: 58  ISFDRKAPTFRHNLYEAYKAQRPPMPDELTAQIEPVKRFFELIGLKEIGLDGYEADDILG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T   + + + F +  +++DKD  QLV   + + D +K+  +D + V  K+G+ PE+ +  
Sbjct: 118 TLAKLYKDQ-FQIVFLTSDKDYCQLVDERSVMLDPMKDIVLDRDAVYAKYGVYPEQFIDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DNIPG+  IG KTAA+LL EY  L+NI  N  ++K  + +E + E  E A L
Sbjct: 177 LALVGDPSDNIPGVSSIGPKTAAMLLSEYQTLDNIYANLDKLKP-RLQEVLRENKENAYL 235

Query: 243 SRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           S++L  + TDVPI    LEHL     +  + I  L+  E   +  ++   Y       + 
Sbjct: 236 SKQLAKIDTDVPIPKPDLEHLTFWAKDLRKAIPLLEEYEINSIKRKIELKYPETNTTKQQ 295

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                +  + K                                + PQ+   E  +K+   
Sbjct: 296 TEYQDDIFKEK--------------------------------EKPQEETAETEEKMPFS 323

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            +       +VNT +    +++L+     S    TD+ +   +  + I+    ++K    
Sbjct: 324 AV-------LVNTLNFVTLLKELKEAKQISLDTETDSPEPMRANLVGISFCMDEKK---- 372

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 ++ L    +      N    E+L +L+   +    L +GHN+K+D +VL R G+
Sbjct: 373 ----AYYLPLGHQLAV-----NLPLPEVLRHLEDALK--GKLLLGHNLKFDLIVLARNGL 421

Query: 482 SM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537
            +     D ML +Y+LD G  ++ + + A   L+Y      +++   K+    D +   +
Sbjct: 422 ELDNPLFDTMLAAYILDPGTLNYSLETCALNELNYKMIPISDLIGKGKNQSTFDLVEPEK 481

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++  + +L+ + R K+    + ++++ ++ P+I V+ QME+ G+ ID  +L +
Sbjct: 482 ACIYSAEDAWAVYKLYPVYRRKVDFSVMANLFDTIELPLIKVLQQMEMNGVAIDCSVLSE 541

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S +I+  L +L + IY  +G +FN++S +QL  +LF + K P G KTKTG + T    L
Sbjct: 542 ISHQINLELKTLTDKIYAFAGYEFNINSTQQLAKLLFEEKKLPYGRKTKTG-YSTDNSVL 600

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D  I   I+++RQLSK++STY  +LP  IN +T R+H+ ++   T TGRL+S  
Sbjct: 601 EELAI-DYEIAGIIIQYRQLSKLQSTYVSALPKMINPQTGRIHSSFNQTVTSTGRLSSSN 659

Query: 718 PNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP++T++G++IR+AF +      ++ ADYSQIELR+LA +++   L + F+  LD
Sbjct: 660 PNLQNIPVRTEIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFKQDLD 719

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH+ +AA+IF V+IEKV+P  RR AKTINF I+YG+   +L+ +L I  +EA D I  Y+
Sbjct: 720 IHKRMAAKIFNVDIEKVTPDQRRAAKTINFGILYGMGQRKLSRELGISLNEAKDIIDGYY 779

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            +FP I  +I +  N  RQ  Y ET+FGRR++   I+S    +++  ER A+N PIQG+A
Sbjct: 780 AQFPSIRNFINQCVNKARQQHYAETLFGRRLYLPNIDSKNQGLKSEAERIAVNMPIQGTA 839

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+++HK ++  +   KM+LQ+HDEL+FEV +E +     I+   ME A  PK 
Sbjct: 840 ADLIKIAMLNIHKQIDKRE-DIKMILQVHDELLFEVQQEALEETKNIVKTCMESALPPKY 898

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
             +V LK ++ V  NW E +
Sbjct: 899 AEKVHLKTDVGVGKNWFEAH 918


>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/991 (32%), Positives = 510/991 (51%), Gaps = 106/991 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   L LVDG    YRA++A P       G P + + GF +ML ++L +   +    + 
Sbjct: 5   SRRPRLVLVDGHGLAYRAYHALPPTLATSAGEPTHVVFGFASMLLEVLNDFEPD----YV 60

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    +FR ++Y +YKA+RP+ P+ L  QL  +R    A GIP +  +G+EADD+I
Sbjct: 61  IVCFDT-GRSFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPP 176
            T    A   G  V I++ D DL+QLV     +    ++        D + VI+++G PP
Sbjct: 120 GTLAARATANGLEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++   +AL GD  DNIPG+PGIG KTA  L+Q + +LE +L     ++           
Sbjct: 180 ERLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEMLDRIDEVEP---------- 229

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                            PRL   L+A   T L +R   T   DA
Sbjct: 230 ---------------------------------PRLREALRAARETVLASRRLATIVRDA 256

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                + LD+          E  +      +  +F SL  +  +      P++   +   
Sbjct: 257 ----DITLDLEQARFGDFDRERVLQ---LFRELEFRSLVPRLPQ------PRQPVRKTAA 303

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             SQ          ++   D+   V+ LET  + +  + T  +   ++  + IA++T   
Sbjct: 304 PASQRRA-------VLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPD 356

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++ L   T           +++L  L  F  +    +  H+ KYD LVL
Sbjct: 357 RS--------YYVPLGHTTG----DTQLDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVL 404

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDK 532
            R G      + D M+ +Y+L  G ++  +  +A   L +  +E   ++   K  + +D+
Sbjct: 405 ERAGFPRPHIDFDTMIAAYLL--GENAVGLKELAFTKLGWEMEEITELIGRGKKQLTMDR 462

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              ++V ++A  +     +L  +LRP+L     L ++  ++ P+IDV+  ME  GI ID 
Sbjct: 463 AEIARVTQYACADVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDV 522

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L+Q+S  +   L +LE  IY+L+G   N++SP+QL  +LF +L  P G +TKTG +  
Sbjct: 523 PYLEQLSIMLDGQLHALERRIYELAGHPLNINSPQQLSTLLFDELGLPRGKRTKTG-YSV 581

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LE +    +PI++ ILE+RQL K+KSTY D+LP  ++ +T RVHT +      TGR
Sbjct: 582 SQEVLENLR-DTHPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGR 640

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP--PTKK-------LISADYSQIELRILAHIAK 763
           L+S +PNLQNIP + +LG  +RRAFI+   P  +       L+S DYSQIELR++AH ++
Sbjct: 641 LSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQ 700

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + F    DIH   A+E+FGV ++ V+P+MRR AK +NF I+YG+  + LA    +
Sbjct: 701 DPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGM 760

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R +A  +I+ YF RFPG+  Y+E+T+    + GYVET+FGRR +  EI S   + R   
Sbjct: 761 SRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAA 820

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N P+QG+AADI + AMI+VH+ L +  L ++MLLQ+HDELV EVPE E+ T +++
Sbjct: 821 ERMAVNMPLQGTAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTTEL 880

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   M +     + L VPL+V+ K   NW +
Sbjct: 881 VTTRMSRV----VELSVPLEVDAKAGPNWAD 907


>gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1]
 gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1]
          Length = 1027

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/982 (33%), Positives = 506/982 (51%), Gaps = 93/982 (9%)

Query: 4    ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            +  + +VD  S IY+ F+A P ++    GLPV+A+ GF   + +LL     +    +   
Sbjct: 127  DKLVVVVDAHSLIYQVFHALPPMTST-GGLPVSAVYGFVGDMLELLSRKNPD----YLIA 181

Query: 64   IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             FD   VTFRNE+YP+YKANR  +P+ L  Q+PL+R A  A GI  IE  GFEADD++AT
Sbjct: 182  AFDKSEVTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLAT 241

Query: 124  YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 E+ G    ++++DKD  QL+S  T +Y+  K+++ID   +   WGI P+++V  Q
Sbjct: 242  VAAKVEEAGGRCLVVTSDKDCRQLISDQTKIYNIRKDQEIDAAELFGLWGIRPDQVVDYQ 301

Query: 184  ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            AL GD +DN+PGI  IG K A  LL+ +  LE IL NA  I  KKR+EN++   E A +S
Sbjct: 302  ALVGDPVDNVPGISLIGPKIAQQLLETHDTLEEILNNAESISGKKRKENLMNGREAAMMS 361

Query: 244  RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            R+LV L+ DV   IP    +    +  R+                               
Sbjct: 362  RELVELKRDVESPIPWNRCVRSAADLERV------------------------------- 390

Query: 304  LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                               D  ++   F  L  + +++   + P +            P 
Sbjct: 391  -------------------DALLQEFGFRRLRSRAAELLGGEAPVE---------EPKPA 422

Query: 364  NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                Y  I N  +++    +L      +    T +  A     + I+I+    +      
Sbjct: 423  WESRYQTITNESELKALAVELAKQTVLAIDTETTSTHARGCDLVGISIAWQPGE------ 476

Query: 424  VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
                +I +       +  +      ++  L+   E+    K+GHN+K+D +VL   G+ +
Sbjct: 477  --AAYIPVRAPDGDPAINELI----VIEILRDVLESSAIEKVGHNLKFDVIVLRSAGVQL 530

Query: 484  RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
             G   D M+  Y+L+SG  +H +  +AQ+ L +T    K+++ + K  I +D++    V 
Sbjct: 531  GGITMDTMVADYLLNSGGRNHGLDDLAQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVS 590

Query: 540  EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
             +A E+ +V ++L   LR +L    L  +++ ++ P+ +V+++ME  GI ++ D L ++S
Sbjct: 591  PYACEDVDVPIRLAPTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMS 650

Query: 600  AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
                K++  L   ++  +G +FNL SPKQLG +LF +L  P   KTKTG   +T  D+  
Sbjct: 651  ERFDKDIADLRALVFSAAGHEFNLDSPKQLGVVLFEELGLPVIKKTKTG--VSTDADVLS 708

Query: 660  INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                ++ I +++L++RQ +K+K+TY D+LP  I  +T RVHT +      TGRL+S EPN
Sbjct: 709  QLAVNHEIAEHVLQYRQATKLKNTYIDALPQLICDKTGRVHTSFRQDVAATGRLSSSEPN 768

Query: 720  LQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
            LQNIPI+T+ G+ IR AF +      L+ ADYSQIELR+LAH +    L   + +  DIH
Sbjct: 769  LQNIPIRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALIGAYHDDADIH 828

Query: 779  RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              VAAE+ G+   +V+  +RR AKTINF I+YG SPF LA  L I   EA DYI+ YF R
Sbjct: 829  TRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPFGLAKTLGISNDEARDYIELYFQR 888

Query: 839  FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS------PKSSIRNINERAAINAPI 892
            + G+  ++  T    R  GYV T+ GRR     +         K       ER AIN PI
Sbjct: 889  YSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKLPESKRRSLTEPERIAINMPI 948

Query: 893  QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
            QG+AAD+ + AM+ VH+ L+   L  ++LLQIHDEL+ E P+EE+   S  I  +M    
Sbjct: 949  QGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLESPDEELDALSDTIREAMTSVM 1008

Query: 953  LPKINLRVPLKVNIKVSNNWQE 974
                 L VPLKV++     W +
Sbjct: 1009 ----ELDVPLKVDVAHGRTWAD 1026


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/980 (32%), Positives = 515/980 (52%), Gaps = 94/980 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +++ ++LVDGS+++YRAFYA   LS    GLP NA+ GF NML KLL+  + E    + 
Sbjct: 10  SEKSTIYLVDGSNYLYRAFYAIRELSNSR-GLPTNAVYGFTNMLIKLLRERKPE----YI 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A+ FD    TFR+E Y  YKA R   PE L+PQ+P ++   + F IP +E QG EADDII
Sbjct: 65  AITFDLKGPTFRHETYAQYKATRKATPEALIPQIPYIKDIIRGFSIPILEQQGTEADDII 124

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T       EG  V I+S DKD++QL+SP   + DT+ +   D+  V +++G+ PEK+  
Sbjct: 125 GTLACRFAGEGLKVIIVSGDKDMLQLLSPDVIMIDTMNDRTYDVAAVRERFGVDPEKVPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           +  LTGD  DNIPGIPGIG K A  L++EYG++E IL N  R++                
Sbjct: 185 ILGLTGDMSDNIPGIPGIGPKGALRLVEEYGSIEEILRNVERLR---------------- 228

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                       P+L   ++      L++R             P
Sbjct: 229 ---------------------------NPKLRDSVRVYGEQALLSRDLARIRTGI----P 257

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           +  D+     +    E         +  +FSSL  + S +                    
Sbjct: 258 LTFDLEEARLQEPDREVLTR---LFRELEFSSLLQEFSVVE------------------- 295

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              ++S+T +   + +  +++ L+  G    +++  + +   ++ I +A+          
Sbjct: 296 DCGDNSHTLLRTPEAVAAFMEPLKEGGFLVLEMVLSSSEPMRAELIGVALGLDSG----- 350

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 +I L    + + +  +   +++   L  F  ++    +GH++K   +VL + G+
Sbjct: 351 ---NAGYIPL-EPGAAEKSASSLSEEQVFPVLFPFLADKKIALVGHDLKTVLIVLSQKGV 406

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPIDKISDS 536
            ++    D M+ +Y+L+  R  ++++ I Q +L       RK+++               
Sbjct: 407 KVQNPLLDTMVAAYILNPARRGYELSEIVQDYLHRQVEPLRKKLVGGSSPKQSPASFPPE 466

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           ++++ A      I +L   L  K+    L  +++ ++ P++ V++ ME  G+ +D  LLK
Sbjct: 467 RLRDFACRRVEAIGELASTLIEKMEETGLRELFDSVEMPLVAVLAAMEEKGVLLDLHLLK 526

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S E+   L   E  IY L+GE+FN++SPKQL  ILF KL  P G KTK G   +T  +
Sbjct: 527 EMSQELGHLLSLSEAKIYALAGERFNIASPKQLQTILFEKLNLPKGKKTKGGY--STDVE 584

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           +      ++ +   IL +R ++K+KSTY D+LP+ IN RT R+HT Y+     TGRL+S 
Sbjct: 585 VLSNLALNHELPAEILAYRSMAKLKSTYIDALPSLINIRTGRIHTSYNQTVAATGRLSSS 644

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPI+T  G++IR+AFI+PP   ++SADYSQIELR+LAH+++   L   F    D
Sbjct: 645 NPNLQNIPIRTLEGKRIRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLINAFAAGED 704

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA++FGV  E ++ +MRR AK INF ++YG+S F L+ +L IP+ +A  YI  YF
Sbjct: 705 IHSRTAADVFGVFPEMINAEMRRQAKVINFGVLYGMSAFGLSRELGIPQKQAQAYIDGYF 764

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++  +  Y++      R+ GYV T+  RR +  EINS   ++R + ER AINAPIQG+A
Sbjct: 765 KKYESVKTYLDGILQQARERGYVTTLLNRRRYLPEINSVNPAVRQLAERMAINAPIQGTA 824

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ +   + +  + + M +Q+HDELVFEVP+EE      ++   ME      +
Sbjct: 825 ADLIKMAMLRIADLIREKGMKSAMTMQVHDELVFEVPQEEKIALMNLVRQEMEGV----V 880

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L+VPLKV+I    NW E +
Sbjct: 881 ELKVPLKVDIASGRNWDEAH 900


>gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
 gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
          Length = 945

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/992 (32%), Positives = 514/992 (51%), Gaps = 67/992 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                LF++DG +  YRA +A      R   G+  +A+ GF N L  +L++ R     +H
Sbjct: 4   SPSKRLFILDGMALAYRAHFAFFSNPIRNSKGVNTSAVYGFANTLLGILEHER----PTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD  A T R+++YP YKANR  +PE L  Q+PL+    +A  IP +  +G+EADD 
Sbjct: 60  IAACFDTSAPTARHKLYPAYKANRESMPEELSDQMPLIFRLLEAMNIPILRYEGYEADDT 119

Query: 121 IATYTYIAEK-EGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175
           I T   IA+  EGF   ++S DKDL QL+S T  L+   K     E ID+  + ++WGI 
Sbjct: 120 IGTLARIADGTEGFQTYMVSQDKDLGQLISSTCFLWKPGKRGNDHEVIDLAKLKEQWGIE 179

Query: 176 P-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             +++V + AL GDS DNIPG+PG+G KTA LL+ E+G++EN+L N  ++K  KR++ + 
Sbjct: 180 RADQVVDILALMGDSSDNIPGLPGVGEKTAKLLIGEFGSVENLLSNTDKLKG-KRKQIVE 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E    A LS++L  +  +VP+T+ L  L+  + +   L + L+ LEF  +  ++      
Sbjct: 239 ENGAMATLSKQLATIDRNVPLTVTLPELVKREPSPEELQALLQELEFRSMQAKLFGKKAP 298

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +                K      ++           S+          +    ++ L  
Sbjct: 299 EPR--------------KAPLPADDLFAPAPRTEQPLSAEPSAPVSGARQNGSGQMDLFE 344

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            + L         Y      +       +LE   S  F   T  ++      + ++    
Sbjct: 345 ERHLKTVDDFRHEYIIADTPEARSSMAAELEKYDSWCFDTETTGLNPLMDNLLGVSFCAE 404

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K          ++ +S                 L  ++   E     KIGH++K+D  
Sbjct: 405 PHK--------AWYMPVSGPAD-------------LEAVRPLLEGPA-EKIGHHLKFDLE 442

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-----KSRKSSI 528
           VL   GI ++G F D +L   ++  G   H +  +A+  L Y+  ++       ++K  +
Sbjct: 443 VLRANGIHVKGPFFDTLLAHALIAPGM-KHGMDVLAENLLQYSTIKLKDIAAPGAKKREL 501

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
               +    + +++ E++++ LQL  +L+ ++    +  ++  ++ P++ V++ ME +GI
Sbjct: 502 DTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKESGMEKLFRTVELPLLPVLADMEFSGI 561

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
           ++  + L++ S ++   +  L E I + +G   NL+SPKQLGD LF +L+      KTKT
Sbjct: 562 RVLPESLEKASVKVGAIIDGLRERIEEAAGHPLNLNSPKQLGDFLFGELELVKKPKKTKT 621

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+  T +D        +PII +IL +R+  K+KSTY D+LP +I  R  R+HT +    
Sbjct: 622 GQF-VTDEDTLSALAPQHPIIADILAYRENMKLKSTYLDALPKYICPRDGRIHTQFHQML 680

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITP 766
           T TGRLAS +PNLQNIP++T+ G+ IR AF+ +     ++SADYSQIELRI+A ++    
Sbjct: 681 TATGRLASQDPNLQNIPVRTEQGRLIRTAFVPASEKYTMLSADYSQIELRIMAALSGDPA 740

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           +   F    DIH   AA ++G+  ++V   MRR AKT+NF IIYGIS F L+ +L  PR 
Sbjct: 741 MCGAFREGRDIHTETAARVYGIPRDQVDAVMRRAAKTVNFGIIYGISAFGLSQRLGCPRG 800

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EAA  I+ YF +FP +  ++E   +   Q GY ET+ GRR    EINS   +I++  ER 
Sbjct: 801 EAATLIENYFTQFPVVKSFMEDLVHKAEQAGYAETLLGRRRMIPEINSANKTIKSAAERT 860

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN PIQG+AAD+ + AMI V K L+     ++++LQIHDEL+ ++  +E+    +I   
Sbjct: 861 AINTPIQGTAADMIKIAMIHVDKLLK--GTRSRLILQIHDELLVDLHRDELDLIPKI--- 915

Query: 947 SMEKACLPKINLR--VPLKVNIKVSNNWQEEN 976
             E+A +  + L   VP+ V  +   NW E +
Sbjct: 916 --EEAMVSALPLPNGVPILVEARTGGNWLEAH 945


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/988 (32%), Positives = 511/988 (51%), Gaps = 77/988 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            ++  ++++D    IYRA++A          G  ++A+  F   L  L+          +
Sbjct: 6   TEDKTVYILDSYGLIYRAYFALLNHPLTNPGGDNISALVIFFKNLKALISK----YNPCY 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR+E+Y +YKANR K PE L  Q+P +    +A  IP +   GFEADDI
Sbjct: 62  LAAAFDSRVKTFRHELYAEYKANRAKTPEDLHAQVPWIEEILEALEIPVLRYDGFEADDI 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176
           IAT      +E     I+S DKDL+QLV+ +       +     E I  + V++KWGIPP
Sbjct: 122 IATVAKKCAQENRPCRILSGDKDLLQLVTDSCLEMQPDRANGGWEVIGAQEVLEKWGIPP 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           EK++   +L GD+ DN+PG+ G+G KTA  LL +YG L+ I  +AS IK     E I   
Sbjct: 182 EKILDYLSLVGDASDNVPGVKGVGDKTAIKLLTQYGTLDEIYAHASEIKGA-LGEKIRND 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A  S+KL+ LR DVP+ I  E    ++ N       L+      +            
Sbjct: 241 KDNAYFSKKLITLRYDVPVEIDFESFCTKNINFKSGAEVLEKYGAYAIAK---------- 290

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                              S  S+  ++I+SE+          +
Sbjct: 291 -----------------------------------SFASETAAEIHSEEKLTLQEEPEEK 315

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKL--ETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           K+     N   Y    N  +++ + Q +        +F   TD+++   +  +  ++S  
Sbjct: 316 KVLSVKQNEGDYKPCTNLDELKSFAQSILESAEKIVAFDTETDSLNTHEANLVGFSLSVE 375

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             K         I++ + +     +  +    K+ L+ L+K F  +    + HN K+D  
Sbjct: 376 KGKG--------IYVPVILSGGMFAP-ETISKKDCLAVLEKLFAEKELTLVMHNGKFDLE 426

Query: 475 VLHRYGISMR---GFEDIMLMSYVLDS---GRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           VL   G+S +      D M+ +++L+    G+S + +  +A+  L     E     + + 
Sbjct: 427 VLAANGMSAKTECKIFDTMIAAWLLNPAASGKSPYSLEFLAETKLGLKGIEFKDIVQKNQ 486

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
               +   +  ++  E+S+  LQL+ LL+ ++    L  ++  ++  ++ ++  MEI GI
Sbjct: 487 TFADVPLEKAFKYGAEDSDFTLQLYYLLKDEIKKSNLEKLFYEMEMKVLPILVSMEIQGI 546

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+  L +   E++  +   E+ IY  +G +FN++SPKQL +ILF K   P G KTKTG
Sbjct: 547 HLDKKKLNEYKDELAVLISEKEKEIYKEAGCEFNIASPKQLQEILFEKRNLPHGKKTKTG 606

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
               TA   E +   ++P+ K IL++R  +K++STY ++LP   + +  R+HT +    T
Sbjct: 607 YSTDTAVLEELVFSTNDPLPKMILDYRSYTKLQSTYVEALPLLAD-KNGRIHTSFLQTGT 665

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++ + G++IR AF + P   LISADYSQIEL +LAH++    L 
Sbjct: 666 ATGRLSSRDPNLQNIPVRDESGRRIRSAFTAVPGTVLISADYSQIELVVLAHLSGDKNLC 725

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F N +D+H+  AA I+G++ E+V P+ RR AKT+NF ++YG+S FRLA +L I R+EA
Sbjct: 726 SAFINGIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAFRLANELNISRTEA 785

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            ++I +YF  +  + +++++TK   R+NGYVETI GRR +  EI S    +    ER AI
Sbjct: 786 KNFIDQYFSTYSDVKKFLDETKRMARENGYVETITGRRRYIPEIKSSSKIVLQGAERIAI 845

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AMI V  +LE      KMLLQ+HDEL+FE PE+    A  II   M
Sbjct: 846 NTPIQGSAADIVKTAMIKVQAALEKSGTGAKMLLQVHDELIFECPEDNAGNAISIIQREM 905

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A    + L++PL+V+++   NW E +
Sbjct: 906 ENA----VQLKIPLRVSVERGKNWGEFH 929


>gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6]
 gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6]
          Length = 951

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/998 (31%), Positives = 503/998 (50%), Gaps = 69/998 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + L LVDG +  +RAF+A    + R   G P  A+ GF  +L  ++Q  +     +
Sbjct: 1   MTHTHRLVLVDGHALAFRAFHALKESNLRSSRGEPTYAVYGFAQILLSMIQEQQ----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           +  + FD    TFR+++Y +YKA R + PE   PQL  ++   +   IP    +GFEADD
Sbjct: 57  YVVIAFDV-GRTFRDDLYAEYKAGRAETPEEFHPQLVRIQELCRTLNIPIATAEGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC------LYDTVKEEKIDIEHVIKKW- 172
           +I T   +A  EG    I++ D D +QLV+                    D   V +++ 
Sbjct: 116 VIGTLARLASAEGLETLILTGDTDALQLVNAQVRVILANPYGQKTTTTIYDEAKVRERYQ 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P ++  L+ L GD+ DNIPG+ GIG K A  LL ++G +EN+  +   +  K+ ++ 
Sbjct: 176 GLGPHQLADLRGLKGDASDNIPGVRGIGEKGAISLLNQFGTVENLFDHLPEV-PKRYQKP 234

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +    E A  S+KL  +  DVP+ + L    + D +   +I   + LEF           
Sbjct: 235 LDGQREVALFSKKLATIVADVPVQLDLAAAAIHDYDRAAVIRLFQELEF----------- 283

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              +  I+ +    + T      +E     + +   +Q S          + +TP     
Sbjct: 284 GASSGLIKKLPEPPSPTPLPLFGVELPSSLEDSSAPTQLSFF--------AAETPAPPVA 335

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            R             Y  I  + ++    Q L      +F      +  F S+   I+++
Sbjct: 336 TRSAL--------GEYRSITTSSELADLTQALAAAPGFAFDTEASGLRPFASQLCGISLA 387

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                         +++         S+G      E+++ L  FF + +  K  HN K+D
Sbjct: 388 LSPGS--------AVYVPCGH-----SSGAQLSLAEVVAALGPFFADPNKAKYAHNAKFD 434

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEILKSRKSSIP 529
             +L   GI ++G   D M+ + +L       D+A    +        ++++      I 
Sbjct: 435 IEMLLGVGIEVQGLAFDTMIAAALLGKRAGLKDLAFYELQLPDPMTPIEDLIGRGTKQIS 494

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588
             ++   +   +A  ++++ L+L   L P+L    KL  +Y RL+ P++ V+ QME  GI
Sbjct: 495 FAQVPIERATPYAAADADMTLRLVHALEPQLATTPKLHDLYRRLELPLVHVLVQMEQAGI 554

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP---SGAKT 645
            +D+  ++ +   +   + ++E+ IY ++   FN++S  QL DILF K+           
Sbjct: 555 ALDKPYIEYLGQRMGTRIAAIEQEIYQIAEGPFNINSSDQLSDILFGKIGLSTEGVERTA 614

Query: 646 KTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           KT ++  TA  LE++   D + I + ILE+R+LSK+KSTY D+LP  +N RT RVHT Y+
Sbjct: 615 KTKKYSITADTLERLRERDTSGICERILEYRRLSKLKSTYVDALPALVNPRTGRVHTTYN 674

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
                TGRL+S +PNLQNIP++T  G++IRR F++ P  + I+ADYSQIELR+LA+I K 
Sbjct: 675 QVGAATGRLSSNDPNLQNIPVRTQEGREIRRGFVAAPGHRFIAADYSQIELRVLAYITKD 734

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F+   DIH   AA++FGV I++V  + RR AKT+ F +IYGIS F LA +  + 
Sbjct: 735 PNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIYGISAFGLAQRTEMG 794

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           RSEA D I   F RFPGI +YI +T    +  G V+TIFGR+    E+ S     R   E
Sbjct: 795 RSEAQDLINSLFTRFPGIRDYINRTLEQGQTTGVVQTIFGRQRAMPELQSR-GPRRAAAE 853

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AINAPIQG+AADI + AMI + ++L +  L T++LLQ+HDEL+ E PEEE+   ++++
Sbjct: 854 REAINAPIQGTAADIMKIAMIKMARALSERGLRTRLLLQVHDELILEAPEEEVALVAELV 913

Query: 945 VHSMEKACLPKINLR------VPLKVNIKVSNNWQEEN 976
              M  A     + +      VPL V++++  NW+E  
Sbjct: 914 REVMAGAYSLAWHDQEGQSHHVPLGVDVEIGPNWEEMG 951


>gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 896

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/977 (32%), Positives = 515/977 (52%), Gaps = 96/977 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           ++L+++D S F+YR+++A   ++ K  G   NA+ GF   + KL ++   E    H   +
Sbjct: 8   HNLYVLDASGFLYRSYFAIRNMTNKQ-GESTNALYGFIRSVLKLFKDFNPE----HLVCV 62

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R E+YP+YKA+R  +P  L  Q+   +      GIP + +   EADD + T
Sbjct: 63  FDGPNNAKKRLELYPNYKAHRSAMPPDLRYQIEWAQDFCSLMGIPYLSVPEVEADDTMGT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK-EEKIDIEHVIKKWGIPPEKMVCL 182
               AE++G    + ++DKD+ QLV+P   L +T K    +D   + K+WG+PP +MV L
Sbjct: 123 VAKWAEQQGAITYLCTSDKDMAQLVNPHVFLLNTHKDNTILDAASIEKEWGVPPSQMVDL 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            A+TGD+ DNIPG+ G G KTAA LL+++G+L+ IL +   +  KK++E +   A+ AR+
Sbjct: 183 LAMTGDASDNIPGLTGFGEKTAAALLRQFGSLDYILAHPEEVPGKKKQETLQTEADLARI 242

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR LV +   V I                 I+F K                      +PV
Sbjct: 243 SRDLVTIDLSVEIPQE--------------IAFYKK--------------------TDPV 268

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           +  + T   +                  F+SL  +  +    +   +   E ++      
Sbjct: 269 IDPLKTFYARM----------------NFNSLLRELGQEEPVEAAVEAEKETVE------ 306

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  +   +     ++ L +     F   T  +    ++ + I      +K     
Sbjct: 307 -----YVLVDEPEAFDALLKNLSSEKQICFDTETTDIQPLKAELVGIGFGIHPKK----- 356

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                ++ L+    +         + +L  +K  FEN      GHN+KYD  VL   GI 
Sbjct: 357 ---AWYVPLNGKLGK---------QRVLEGVKPLFENSAIGFYGHNVKYDWHVLQNEGIQ 404

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQV 538
           ++    D +L SY+L++    H +  +A ++         E++   K+ + +  +   +V
Sbjct: 405 IQNICFDTILASYILNAHSRQHSLEVLALEYFGKVTIPISELIGKGKNVLSMRDVPIERV 464

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            E+  E+ +   +L  +L  +L    LL++Y +++ P++ V+++ME  GI +D   L+Q+
Sbjct: 465 TEYCCEDVDFTCRLKEVLEKQLKERDLLNLYHQIELPLLVVLAKMERRGIYVDIPYLEQL 524

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+++ L +L+E+IY ++GE+FNL+SPKQ+ ++LF KL  P+  KT TG   +T+ ++ 
Sbjct: 525 SKELTQELKTLQESIYTMAGEEFNLNSPKQVSELLFIKLGIPAPKKTATG--HSTSAEVL 582

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +    D P+   ILE+R L K++STY D+LP+ +  RT R+H+ ++ +   TGRL+S +P
Sbjct: 583 EFLKNDYPLAGKILEYRLLEKLRSTYVDALPSQVIPRTHRIHSTFNQSVAATGRLSSQDP 642

Query: 719 NLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+T+ G+KIR AF         +SADYSQIELR+LAH+++   L   F+N+ DI
Sbjct: 643 NLQNIPIRTEEGRKIRGAFRPEKEGWSFLSADYSQIELRLLAHLSQDPVLMAAFQNNEDI 702

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AA +F + +E+VS + R  AK INF IIYG   F LA +L I   +A+ +I  YF 
Sbjct: 703 HTYTAASMFEIPLEQVSKEQRYQAKAINFGIIYGQQAFGLARELGIEVKQASKFITMYFQ 762

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P I EY++++K   R  G   T+ GR     EI S    IR   ER A+N P+QG+AA
Sbjct: 763 RYPKIKEYLDQSKENARATGKSVTLTGRERIIPEILSKNMQIRAAAERLAVNTPLQGTAA 822

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + AM+ + + +E   L   M+LQIHDEL+FE+P+EEI+  SQ++   M+   L    
Sbjct: 823 DLIKMAMLKMDEEIEKQHLKGFMILQIHDELIFEIPDEEISLFSQLVPEVMQSVML---- 878

Query: 958 LRVPLKVNIKVSNNWQE 974
           L V L V+I +  NW+E
Sbjct: 879 LNVSLVVDINIGKNWKE 895


>gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645]
 gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645]
          Length = 880

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/958 (33%), Positives = 505/958 (52%), Gaps = 93/958 (9%)

Query: 27  SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPK 86
                G PV+A+ GF   L  LL+  + +    +    FD P  TFR+E+Y DYK  R +
Sbjct: 1   MTSPSGQPVSAVYGFARDLANLLREKKPD----YLICAFDPPGGTFRHELYVDYKVTREE 56

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +P  L  Q+ L+R   +A  +  +E+  +EADD++AT   I E  G   T++++DKD  Q
Sbjct: 57  MPVDLRAQIGLIRRMLEAMNVAILELVNYEADDVLATVATIVEANGGDCTVVTSDKDCRQ 116

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L+S    +++  K    D + ++  WG+ P+++V  Q+L GDS+DN+PG+  IG K A  
Sbjct: 117 LISDRVRMFNVRKNAFYDADALMTDWGVRPDQVVDFQSLVGDSVDNVPGVALIGPKIAKE 176

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           LLQ+Y  L+ +L NA  I   KRREN++     A LSR+LV L  DVPI I         
Sbjct: 177 LLQKYETLDAVLDNAGEISGAKRRENLINGRAMAELSRELVRLVRDVPIEID-------- 228

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
            +  R+    +  +  +L                                          
Sbjct: 229 WDACRVHPINQE-QVQELCREFG------------------------------------- 250

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
               F +L+ + +    E  P     E +           +Y  I   + +   V KL  
Sbjct: 251 ----FRTLAREMAAFQVE-APAADKPEWIA----------NYQTIDTIEKLDALVAKLAD 295

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   SF   T + +   +  + I+ S  DQ +     + +   D+ +  S          
Sbjct: 296 VKRLSFDTETTSTNPRWADLVGISFSW-DQGEGVYIPIRSPEGDVKLDESL--------- 345

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
             +L  L+   EN    K+G N+KYD +VL   G+++RG   D M+  Y+L++G  SH +
Sbjct: 346 --VLEKLRPILENSAIEKVGQNLKYDLVVLRGVGVNVRGASFDTMVAHYLLEAGARSHGL 403

Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             ++ ++L +      E++ + K+ I +D++   +V  +A E++++ L+L  +L  ++  
Sbjct: 404 DELSLRYLQHETVKISELIGTGKNQIRMDQVPVDKVGYYAAEDADIPLRLDPILSERIEA 463

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           E L  +   ++ P+IDV+ +ME  GI++D + L ++S +  + +  LE  IY L+G  FN
Sbjct: 464 EGLGDLLTDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLEREIYQLAGRDFN 523

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG +LF +L  P   KTKTG   T A+ LEQ+    + +   I+++RQ +K+K 
Sbjct: 524 INSPKQLGTVLFDELNLPVIKKTKTG-PSTDAEVLEQL-AKQHDMPAKIVQFRQYAKLKG 581

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PP 741
           TY D+LP  I  +T RVHT ++     TGRL+S +PNLQNIPI+T   ++IR AFI   P
Sbjct: 582 TYVDALPVLICSKTDRVHTSFNQVVAATGRLSSNDPNLQNIPIRTQESREIRSAFIPGTP 641

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             KL+ ADYSQIELR+LAH +    L + ++ + DIH  VA+E++GV +++V+   RR A
Sbjct: 642 DWKLLCADYSQIELRVLAHFSGDPALMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSA 701

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K INF ++YG SPF LA  L I + EA  +I  YF R+PG+   +E+     +++GYV T
Sbjct: 702 KAINFGVVYGQSPFGLAKSLDIDKDEAYGFIDAYFKRYPGVDVLMEQILVDCQRDGYVRT 761

Query: 862 IFGRRIHYDEINSPKSSIR-----NINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           I GRR   D + +     R      + ER AIN  IQGSAADI + AM+ VH+ LE    
Sbjct: 762 ILGRRRAIDGVRTADKRDRLKRQLTMPERTAINTVIQGSAADIIKLAMLRVHRRLEKEGS 821

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             K+LLQIHDELVFE P E +   +Q++   ME A     NL +PL V+IK  +NW +
Sbjct: 822 PAKLLLQIHDELVFETPPEYLEQLAQLVREEMESAR----NLAIPLVVDIKSGDNWAQ 875


>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
 gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
          Length = 949

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/986 (31%), Positives = 514/986 (52%), Gaps = 80/986 (8%)

Query: 3   KENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +N L+L+D  S  YRA Y   + PL++ K  G   +A  GF N L KL+++   E    
Sbjct: 32  DDNALYLIDAMSLAYRAHYIFISRPLINSK--GQNTSAAYGFTNSLLKLIEDHDIE---- 85

Query: 60  HFAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           H AV+FD     TFR E+Y DYKANR   PE LL  +P ++   +   IP +E+ G EAD
Sbjct: 86  HAAVVFDEGEEDTFRKEMYDDYKANRDPPPEELLENIPYIKEIVEGLDIPVLEVPGVEAD 145

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D+I      AE +   V I+S DKD  QL+S    +Y   K     E    +    ++G+
Sbjct: 146 DVIGALAKQAEADDADVVIVSPDKDFKQLLSDKVSIYKPAKGDQDFEIKTRDTFRDEYGL 205

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + V + AL GDS DN+PG+ GIG KTA  LL+EY ++EN++ +A  +  K+ RE + 
Sbjct: 206 DPAQFVDMLALMGDSSDNVPGVYGIGEKTAQKLLREYHSVENLIDHADDLSGKRAREGMQ 265

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E+AE ARLS++LV +RT++ + +    L   + +  +L +  + LEF    +R+      
Sbjct: 266 EHAEEARLSKRLVRIRTELDVGLDWHELQRRELDEEKLTAVFQELEFDSFGDRLGIEGGE 325

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            +             +        E+D +                               
Sbjct: 326 GSEEETDEDDPDLQFDFGPYEKVQELDPEAV----------------------------- 356

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                        Y  +   +++  +  +L      +F     + D   +  + ++ S+ 
Sbjct: 357 ------------DYEVVRTEEELHAFADRLGEEARYAFDAEATSRDPMTADLVGLSFSSE 404

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
            ++          ++             +T T  +L  L      +   K+GHN+KYD L
Sbjct: 405 AER--------ATYVPTP-------LPDDTPTDAVLDVLGPVLARDT-EKLGHNLKYDLL 448

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
           +L ++G+ + G   D M+  Y++    + H++  +A+  L+Y      +++        +
Sbjct: 449 LLKQHGVEVGGTLFDTMVAHYLVAPEEN-HNLDDVARSVLNYKMVPIADLIGDETDRDSM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            ++       +A E++++  +L   L  +L    +L V   ++ P++ V++ ME TGI++
Sbjct: 508 REVDVETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRL 567

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D+L ++ A + + L  +EE +++L+GE+FN++S +QLG+ILF KL  P  +KT TG+ 
Sbjct: 568 DTDVLDEILAGLEERLSGIEEEVFELAGEEFNINSTQQLGEILFEKLDLPVVSKTPTGKP 627

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             T + + Q    ++ I   +L+WR   K+KSTY DSL   ++  T R+HT ++   T T
Sbjct: 628 S-TKESVLQELSTEHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRLHTSFNQTRTAT 686

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+T++G++IRRAF+      L+SADY+QIELRILA ++    +   
Sbjct: 687 GRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRAT 746

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIH   AA ++G++ E V+P+ R  AK +N+ I YGISP+ LA ++R+P  EA D
Sbjct: 747 FQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQRMRMPVDEAQD 806

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            IK+Y   +PG+ + + +     +  GY ET+ GRR +  +I+S  S+ R+  ER A+N 
Sbjct: 807 IIKQYRKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNARSAAERVAVNM 866

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+ AD+ + AM  +H  L     AT+MLLQ+HDELVFEVP +E+  A  +I   M  
Sbjct: 867 PIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPPDELDAAQTMIDDEMRD 926

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A        VP+ V++   +NW E +
Sbjct: 927 ALPLD---DVPVTVDMDTGDNWLEAH 949


>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
 gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
          Length = 938

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/985 (32%), Positives = 500/985 (50%), Gaps = 72/985 (7%)

Query: 7   LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  YRA++A         R   G P +   GF  +L   ++  R     S  A
Sbjct: 9   LLLVDGHSLAYRAYFAYVRGGETGLRTSGGTPTSVSFGFLKLLLDAIERDR----PSMVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR+E+   YK+ R + P+  +  L  +R    A  +P  E+ G+EADD+I 
Sbjct: 65  VTFDTRMPTFRHEVDATYKSGRAETPDEFIDDLQNLREILTALDLPQFELPGYEADDLIG 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP--------TTCLYDTVKE-EKIDIEHVIKKWG 173
           T       +G+ V I+S D+DL QL++              +T    E+     V +K G
Sbjct: 125 TLAVHGAGQGYDVKILSGDQDLFQLITDEGAPGGSIRVLHQNTRTGTEEFGPAQVKEKLG 184

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P ++V  +AL GDS D IPG+ GIG K+A  LL+EYG+L  ++     I      + +
Sbjct: 185 IAPRQVVDYKALCGDSSDRIPGVRGIGAKSAVKLLEEYGSLAQLIEAVDTIPGA-LGKKL 243

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E  E AR S  +  + T+VP+ +  E   L   +  R+   L+ LEF   + ++     
Sbjct: 244 KEGVEDARHSYWMATIETNVPLVVDFEACRLVGFDAERVAPLLEKLEFRSFLRQLQRLQR 303

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                                A  T ++ D     +   + S+     +   +       
Sbjct: 304 SFGGTP--------------SARPTALNEDADNPLAGIGTASEDELWFDFAPSVPMDLEV 349

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKL-ETIGSASFKIITDTMDAFHSKPIAIAIS 412
           R+               +   +D Q ++  L    G  ++   T+ +D  H++ + I  +
Sbjct: 350 RV---------------VQTAEDFQAFLDALLAQDGLVAWDTETNNLDPRHARLVGIGCA 394

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                          ++ L+        G N  T  +++ L  ++++    K+  N KYD
Sbjct: 395 WEPGV--------AYYLPLAHQQ-----GSNLETDAVVAALTPYWQDRERPKVLQNAKYD 441

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
            LVL  YG+++ G   D ML SYVLD     H++ ++AQ  L  T             ID
Sbjct: 442 WLVLRNYGVALAGIAFDPMLASYVLDP-EGKHNLMTLAQNHLQITMGSYEALVPKGQTID 500

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
            +  + V  +  E++ V L+L  +L+ KL  + +L  +++ ++ P+  V+++ME  GI+I
Sbjct: 501 AVEIAAVSRYCGEDAAVTLRLVPVLQAKLDEDPRLAGIFKEIEVPLEPVLARMEERGIRI 560

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D+  L +++ E+ ++L SLE+  Y L+G KFNL SPKQL D+LF KL   +    KT   
Sbjct: 561 DKAYLGELAQELDRDLESLEQEAYTLAGSKFNLGSPKQLSDLLFNKLGLSAKKSRKTSLG 620

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +T   + +    D+PI++ IL +R L+K+KSTY D+LP  ++ RT RVHT ++   T T
Sbjct: 621 YSTDAAVLEKLRDDHPIVEAILSYRTLAKLKSTYVDALPLLVDPRTDRVHTDFNQTVTTT 680

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIP++T   ++IRRAF+  P   L++ADYSQIELRILAH+ +   L + 
Sbjct: 681 GRLSSSNPNLQNIPVRTSFSRRIRRAFVPEPGWLLVAADYSQIELRILAHLTQEPVLLEA 740

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   D+H + A  + G   E+V+ + RR AK IN+ ++YG+   R A +  +  +EA D
Sbjct: 741 FQTGGDVHTLTARLLLGR--EEVTSEERRLAKIINYGVVYGMGARRFARETGVSATEAED 798

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +IK ++ R+P +  ++E+T+    + GYVET+ GRR ++  +       R    RAA NA
Sbjct: 799 FIKAFYRRYPAVFGFMEQTRRMAVEQGYVETLLGRRRYFRGLGQLNQRDREGALRAAFNA 858

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AM+ + ++L      T++LLQ+HDELVFE+P EE      +I   ME 
Sbjct: 859 PIQGTAADIIKIAMVRLEQTL--AGRRTRLLLQVHDELVFEMPPEERPEVEPLIRSGMEN 916

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    ++L VPLKV +    NW E 
Sbjct: 917 A----LDLLVPLKVELNAGPNWLEA 937


>gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47]
          Length = 975

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/982 (33%), Positives = 507/982 (51%), Gaps = 93/982 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + +VD  S IY+ F+A P ++    GLPV+A+ GF   + +LL     +    +   
Sbjct: 75  DKLVVVVDAHSLIYQVFHALPPMTST-GGLPVSAVYGFVGDMLELLSRKNPD----YLIA 129

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD   VTFRNE+YP+YKANR  +P+ L  Q+PL+R A  A GI  IE  GFEADD++AT
Sbjct: 130 AFDKSEVTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLAT 189

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                E+ G    ++++DKD  QL+S  T +Y+  K+++ID   +   WGI P+++V  Q
Sbjct: 190 VAAKVEEAGGRCLVVTSDKDCRQLISEQTKIYNIRKDQEIDAAELFGLWGIRPDQVVDYQ 249

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD +DN+PGI  IG K A  LL+ +  LE IL NA  I  KKR+EN++   E A +S
Sbjct: 250 ALVGDPVDNVPGISLIGPKIAQQLLETHETLEEILNNAESISGKKRKENLMNGREAAMMS 309

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV L+ DV   IP    +    +  R+                               
Sbjct: 310 RELVELKRDVESPIPWNRCVRTAADLERV------------------------------- 338

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                              D  ++   F  L  + +++   + P +            P 
Sbjct: 339 -------------------DALLQEFGFRRLRSRAAELLGGEAPAE---------ESKPA 370

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               Y  I N  +++    +L      +    T +  A     + I+I+    +      
Sbjct: 371 WESRYQTITNESELKALAVELAKQTVLAIDTETTSTHARGCDLVGISIAWQPGE------ 424

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I +       +  +      ++  L+   E+    K+GHN+K+D +VL   G+ +
Sbjct: 425 --AAYIPVRAPDGDPAINELI----VIETLRDVLESSAIEKVGHNLKFDVIVLRSAGVQL 478

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
            G   D M+  Y+L+SG  +H +  +AQ+ L +T    K+++ + K  I +D++    V 
Sbjct: 479 GGITMDTMVADYLLNSGGRNHGLDDLAQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVS 538

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E+ +V ++L   LR +L    L  +++ ++ P+ +V+++ME  GI ++ D L ++S
Sbjct: 539 PYACEDVDVPIRLAPTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMS 598

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
               K++  L   ++  +G +FNL SPKQLG +LF +L  P   KTKTG   +T  D+  
Sbjct: 599 ERFDKDIADLRALVFSAAGHEFNLDSPKQLGVVLFEELGLPVIKKTKTG--VSTDADVLS 656

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++ I +++L++RQ +K+K+TY D+LP  I  +T RVHT +      TGRL+S EPN
Sbjct: 657 QLAVNHEIAEHVLQYRQATKLKNTYIDALPQLICDKTGRVHTSFRQDVAATGRLSSSEPN 716

Query: 720 LQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+T+ G+ IR AF +      L+ ADYSQIELR+LAH +    L   + +  DIH
Sbjct: 717 LQNIPIRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALIGAYHDDADIH 776

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             VAAE+ G+   +V+  +RR AKTINF I+YG SPF LA  L I   EA DYI+ YF R
Sbjct: 777 TRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPFGLAKTLGISNDEARDYIELYFQR 836

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS------PKSSIRNINERAAINAPI 892
           + G+  ++  T    R  GYV T+ GRR     +         K       ER AIN PI
Sbjct: 837 YSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKLPESKRRSLTEPERIAINMPI 896

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AAD+ + AM+ VH+ L+   L  ++LLQIHDEL+ E P+EE+   S +I  +M    
Sbjct: 897 QGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLESPDEELDALSDMIREAMTSVM 956

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPLKV++     W +
Sbjct: 957 ----ELDVPLKVDVAHGRTWAD 974


>gi|332967876|gb|EGK06971.1| DNA-directed DNA polymerase I [Desmospora sp. 8437]
          Length = 881

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/977 (32%), Positives = 511/977 (52%), Gaps = 104/977 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAF+A PLL +   G   NA+ GF  ML K+L+  +     SH  V 
Sbjct: 2   DKLVLIDGNSIAFRAFFALPLL-KNRQGTYTNAVYGFTMMLMKVLEEEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   +TFR+  Y +YK  R K P  L  Q+PL++    AFGI   E+  +EADDII T 
Sbjct: 57  FDAGKLTFRHRDYKEYKGKRDKTPGELSEQIPLIKKLLDAFGIRHFELDQYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              AEK   AVTI++ DKDL+QLVS    L  T K     ++ D+  + +K+G+ PE+++
Sbjct: 117 ARQAEKAEIAVTIVTGDKDLLQLVSDRVHLLMTRKGVTDADRYDLHKIEEKYGLKPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD  DNIPGIPG+G KTA  LL +YG++EN+L +   +  KK +E + E    A
Sbjct: 177 DLKGLMGDPSDNIPGIPGVGEKTALKLLHQYGSVENVLDHIDHLPGKKLKERVAENRRDA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS++                          L +                          
Sbjct: 237 LLSKE--------------------------LATIFCE---------------------- 248

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V LD    + K    +T+      +K  +F +L ++     ++  P +           
Sbjct: 249 -VPLDFGLADLKYEGYDTD-RVTPLLKELEFKTLLERFGGAEAKADPGE----------- 295

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 +   +   ++ + W + L   G A F +     +   ++ +A+A+S   ++   
Sbjct: 296 --TEEIAVETV-GPEETKNWDEWLAQDGLALF-LEMSGENYHRAEVLAVALSDGKKQLF- 350

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                     L   T+++  G            +++  +    K+ +++K  ++ L   G
Sbjct: 351 ----------LEWGTAREWPG-----------FRQWLRDPDRTKVCYDVKATEVALKHQG 389

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           +   GF  DI+L SY++++  S H+++ I  +       +        +   +    ++ 
Sbjct: 390 LETDGFAWDILLSSYLINASESGHELSEIVDRKWGGGLPDDDAVYGKGVKRRRPEGKELA 449

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           EH    +  I +L  LL  +L    L  +Y  L+ P+  V+++ME  G+Q+D+D L+ + 
Sbjct: 450 EHLARKARAIHRLQPLLEEELKENGLDSLYLDLELPLARVLAKMEWQGVQVDRDRLQSLG 509

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+   L  L E I++L+G +FN++SPKQLG+ILF KL  P   KTKTG   +T+ D+ +
Sbjct: 510 EELKGRLEELTEKIFELAGTEFNINSPKQLGEILFDKLGLPVLKKTKTGY--STSADVLE 567

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + I++ IL +RQ+ K+ STY + L   I+  T ++HT ++ A   TGRL+S +PN
Sbjct: 568 KLAPQHEIVEEILHYRQVGKLISTYVEGLLKEIDGETGKIHTRFNQAIAATGRLSSTDPN 627

Query: 720 LQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G++IR+ F+       ++SADYSQIELR+LAH++    L + F+  LD+H
Sbjct: 628 LQNIPIRLEEGRRIRQVFVPSEEEWLMLSADYSQIELRVLAHLSGDENLIEAFQKELDVH 687

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++FGV+ ++V+P MRRHAK +NF I+YGIS + L+  L IPR EAA++I+RYF  
Sbjct: 688 TKTAMDVFGVSADEVTPWMRRHAKAVNFGIVYGISDYGLSQNLNIPRKEAAEFIQRYFDS 747

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+E      + +GYV T+  RR    EINS   + R+  ER A+N PIQG+AAD
Sbjct: 748 YPGVKRYMEDIVRQAKADGYVTTMLHRRRELPEINSRNFNRRSFAERTAMNTPIQGTAAD 807

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AM+ +   LE   L  ++LLQ+HDEL+FE P EE+     ++   ME A    + L
Sbjct: 808 IIKKAMVEMDSVLEKEGLRARLLLQVHDELIFETPAEEMEALDNLVRRVMESA----VEL 863

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPL+V+I     W E 
Sbjct: 864 AVPLQVDINTGKTWYEA 880


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/988 (30%), Positives = 509/988 (51%), Gaps = 92/988 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           +  +  L+++DG S IYR+F+   A P   R   G  V+A+ GF + L KL++ +  +  
Sbjct: 41  LSSQKKLYIIDGYSLIYRSFFGFFANP--IRDTQGNNVSAVYGFFSTLLKLIRENNPD-- 96

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +  V  D    TFR+ +Y  YKANR   PE L  Q+PL++    A  +P I + GFEA
Sbjct: 97  --YLVVALDSMGPTFRHTMYEPYKANRDAAPEELHTQVPLIQNILTALKVPTIAMPGFEA 154

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKW 172
           DDIIAT +  A +      + + DKDL+QLV   T      K+       +  + V +++
Sbjct: 155 DDIIATLSEEATRHQIDTIMFTGDKDLLQLVDEHTFALRPAKKNEKFYRLMGCKEVEEEY 214

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           GI P ++V   +L GDS DN+PG+ GIG K AA LLQ++G+LE I  N  ++     ++ 
Sbjct: 215 GIKPSQIVDYLSLLGDSSDNVPGVKGIGEKGAAKLLQQFGSLEGIYSNL-KLVAPGLQKK 273

Query: 233 ILEYAETARLSRKLVMLRTDVPI--TIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + E  E A+LS++LV L+ D+    T   E  ++ D +    I   + +    +I  +  
Sbjct: 274 LAEGVENAKLSKRLVELKRDLFTVDTFDTEQYLVSDVDYDAAIPLFQEIGMRSIIKELGR 333

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
               ++++  P                                                 
Sbjct: 334 VSSGESSSPIP------------------------------------------------- 344

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQK-LETIGSASFKIITDTMDAFHSKPIAI 409
                +  ++       Y  + +   I+   ++ ++  G  +F + T  +D   ++ I  
Sbjct: 345 ----AKVEAKSETKQAVYEAVTDVTQIKNLFEQAIKAGGVMAFDLETTGLDEMLAQVIGF 400

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           +    + K          ++ L   T +         +++ S L+++  +     +G NI
Sbjct: 401 SFCWEEGKS--------YYVPLVHETKE-----LVDREQVRSLLEEYLGSGRLSLVGQNI 447

Query: 470 KYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           KYD  VL ++GI  +    D M+ +++LDS  S  ++  +A+K+L Y             
Sbjct: 448 KYDYKVLRQWGIMPKNIYFDTMVAAWLLDST-SVFNMDYLAEKYLDYKTVHYTDIVPKDK 506

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  I   Q   +  E+++V  +L+ L    L    L  + + ++ P++ +++ ME+ GI
Sbjct: 507 LLSDIPLEQAVFYGAEDADVTFRLYKLFSELLGARNLRSLLDEVEMPLLVIIANMELAGI 566

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +++ L++ +SAE    + ++   I+ + G  FNL+SP+QL ++LF +   P+GAKT++G
Sbjct: 567 YLERKLIEPLSAEFEGRIDAIRNQIFAICGHAFNLNSPQQLQEVLFVERNIPTGAKTRSG 626

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+ +    D P ++ IL++R L+K+K+TY D LP  IN++T R+H  ++   T
Sbjct: 627 --FSTSTDVLEPLRDDYPEVELILQYRTLNKLKTTYIDKLPLQINEKTHRIHPSFAQTGT 684

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+  +PNLQNIP++T+ G++IR AF+       +SADYSQIEL +LAH+A    L 
Sbjct: 685 ETGRLSCKDPNLQNIPVRTEEGRRIRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLK 744

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F   +D+H   A+ IF V +++V+P  RR AKTINF ++YG+    LA  L+IP SEA
Sbjct: 745 GAFAAGIDVHSSTASLIFDVPLDQVTPVQRRIAKTINFGVMYGMGTHSLAMDLKIPHSEA 804

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I +YF R+  +  ++E TK   +Q G V T+ G      EINS  +  R   ER A+
Sbjct: 805 KQFIDQYFERYSSVRSFVEATKTMSQQVGSVSTLLGHVRTITEINSRSAVERAKAERIAV 864

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N  IQGSAADI + AM+ V   L+  KL  ++LLQIHDEL+FEVPE EI     ++  ++
Sbjct: 865 NTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEVPEAEIEETKAVVKEAL 924

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A    + L VPL+ +I+V +NW + +
Sbjct: 925 EHA----VKLSVPLRTSIEVGSNWGDIH 948


>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
          Length = 876

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/982 (33%), Positives = 511/982 (52%), Gaps = 118/982 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG++  YRAF+A PLL+ +  G+  NAI GF  ML K+L+  +     +H  V
Sbjct: 2   KKKLILIDGNNIAYRAFFALPLLNNEK-GIHTNAIYGFTMMLNKILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + +YK  R K P  L  Q P +R   ++F IP  E++ +EADDII T
Sbjct: 57  AFDAGKTTFRHETFKEYKGGRQKTPPELSEQFPFIRDLLKSFHIPQFELENYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  AEK+ F + I S DKDL QL S  T +    K     E+   EHV +K+G+ P+++
Sbjct: 117 LSLEAEKKDFEIKIYSGDKDLTQLASEKTTVCLCRKGITDIEEYTPEHVKEKYGLTPQQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GDS DNIPG+PGIG KTA  LL+E+  +E ++ +   I  KK +E        
Sbjct: 177 IDMKGLMGDSSDNIPGVPGIGEKTAIKLLKEFETVEKVVDSIDEISGKKLKER------- 229

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 230 ------------------------------------LQEHKQQALMSKELATIKRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E +G   E      +  K   F SL +   KI+  Q  +   LE+L+   
Sbjct: 251 -PLGITVDELEYQGPDWE---KVQSIYKELGFQSLLE---KIDQTQETEVQPLEKLE--- 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   Y  +   +  +   ++       SF +     + F S  + +A+        
Sbjct: 301 --------YQTV--EEITEDLFEQEN-----SFYLEMIGENYFISDIVGMAVQNEKGIFY 345

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                      L   ++  S              KK+ E+E   K   + K   + L R+
Sbjct: 346 -----------LPTESTLKSP-----------VFKKWAEDETKKKTVFDAKRTVIALRRH 383

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKIS 534
           GI ++G   D++L SY+++   S  D A +A+      +        K  K  +P  +I 
Sbjct: 384 GIELKGIEFDLLLASYLINPSESPSDFADVAKLHGFNEVQSDEAVYGKGAKLKLPDREI- 442

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
               +EH    +  + +L    R  L     L ++  L+ P+  +++ ME TG+++D D 
Sbjct: 443 ---YEEHIARKAVGLTKLAETCRDVLKENDQLSLFYDLEMPLALILADMEWTGVKVDVDR 499

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++  E+   L  +E+ IY+L+G++FN++SPKQLG ILF K+  P   KTKTG   +T+
Sbjct: 500 LTEMGDELHNRLQEIEKEIYELAGQEFNINSPKQLGHILFEKMGLPVIKKTKTGY--STS 557

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     + I++ ILE+RQL K++STY D L   +++ T +VHT ++ A T TGRL+
Sbjct: 558 ADVLEKLESSHEIVRYILEYRQLGKLQSTYIDGLLKVVHQNTHKVHTRFNQALTQTGRLS 617

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + SADYSQIELR+LAHI+    L + F  
Sbjct: 618 SADPNLQNIPIRLEEGRKIRQAFVPSEKDWVIFSADYSQIELRVLAHISGDQKLIEAFRE 677

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++F V  E+V+  MRR AK +NF I+YGIS + L+  L I R EA  +I+
Sbjct: 678 DMDIHTKTAMDVFHVQKEEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGQFIE 737

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  +P + EY+++     ++ GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 738 RYFASYPDVKEYMDEIVREAKRKGYVTTLLHRRRYLPEITSRNFNVRSFAERTAMNTPIQ 797

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI + + L+  +L ++MLLQ+HDEL+FEVP +EI T  +I+   ME A  
Sbjct: 798 GSAADIIKKAMIDMAERLKKEQLKSRMLLQVHDELIFEVPPDEIETMKKIVPDVMEHA-- 855

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + L+VPLKV+      W + 
Sbjct: 856 --VELKVPLKVDYAYGPTWYDA 875


>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
 gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
          Length = 911

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/979 (31%), Positives = 493/979 (50%), Gaps = 76/979 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           ++   L+L+DG S IYR+++A         DG  V+A+ GF   L+ +L   R  +    
Sbjct: 5   EETTTLYLLDGYSIIYRSYFAFMGRHLSAPDGTNVSALFGFFRTLFSILDEYRPGA---- 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+ D    TFR+E+YP+YKANR K PE L  Q+P++       G+  +   G EADDI
Sbjct: 61  LAVVLDSRVPTFRHEMYPEYKANREKAPEELHAQVPMIEEILGVMGMTVLRKDGVEADDI 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEK 178
           IAT      K+     I++ DKDL+QL+     +    K     I  + V  +WG+  ++
Sbjct: 121 IATMAERCRKKDRPCVIVTGDKDLLQLLGGEIRMLRPEKGGYQLIGRDDVFDQWGVEADQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +V   +LTGD  DN+PG+ GIG KTA+ LL ++G+L+ +  N +       R  +    E
Sbjct: 181 IVDYLSLTGDQADNVPGVKGIGPKTASKLLTKFGDLDGVYANLNACSTG-ERAKLEASRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LSR L++L+ DV +  P     + D N    +  L       L  +           
Sbjct: 240 DAFLSRSLIILKKDVSLP-PEAPTPVGDLNREAAVPLLLRYGAKALAEQ----------- 287

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                        KG  I  +       K ++ SS+ D+                     
Sbjct: 288 ------------AKGAKISEKQLSRQREKRAEASSVPDE--------------------- 314

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               +    Y +I + + + +W++K  + G+ +  I TD++DA  + P+  +++   +  
Sbjct: 315 ---LLGEGRYEQIDDLEGLDRWIEKAISAGACALDIETDSLDAMLANPVGFSLAVSPK-- 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 +  ++ L          +      +   L +   +     IGHN KYD  VL R
Sbjct: 370 ------QAAYLPLIAEGQ-----RKFDDDAVRERLVRLTSSPSVRIIGHNFKYDYKVLRR 418

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           +G+  +    D M+ +++LD+  +S+ +  +A   L Y                 IS   
Sbjct: 419 WGVVTKNLAFDTMVAAWLLDTTANSYGMDPLAASLLGYKTISFKDVVPKDGLFQDISVET 478

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E++++  + + L R +L    L  ++  L+ P++ ++++ME  GI +  D L+ 
Sbjct: 479 ATRYAAEDADITFRFYELFRRQLKERGLEKLFFELEMPLVPILAEMECAGITLLSDRLEA 538

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K+L ++E++I+   G  FN++S KQL  +LF + K     KTKTG + T    L
Sbjct: 539 YGRELEKDLGTIEDDIWQACGHSFNINSTKQLQQVLFEERKLTPIKKTKTG-YSTDISVL 597

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D  +   +L  R L+K+KSTY D+LP  +N  T R+HT      T TGRL+S +
Sbjct: 598 EELAREDV-VPLLVLRHRSLAKLKSTYVDALPKLVNPETGRIHTQLIQTGTATGRLSSKD 656

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+ + G++IR AF+       ISADYSQIEL +LAH+++   L Q F +  D+
Sbjct: 657 PNLQNIPIRDEDGRRIRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQAFRSGGDV 716

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  A+ IF V+   VS + RR AKTINF ++YG+S FRL+ +L I RS A  +I  YF 
Sbjct: 717 HRRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMSAFRLSRELGISRSRADSFISAYFR 776

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+  I  ++ K      Q+G  +T+ GR      INS   + +   ER A+N PIQG+AA
Sbjct: 777 RYFRIQSFMRKVVQETEQSGVSKTLLGRERSIPAINSRNKTEKAGAERIAVNTPIQGTAA 836

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM++V + +   +L +KM+LQIHDEL+FEVP +E      ++   ME A    + 
Sbjct: 837 DIVKLAMLAVSRRMASEELKSKMVLQIHDELLFEVPFDEADRMEGLLKEEMESA----VK 892

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL+V+I+   +W + +
Sbjct: 893 LSVPLRVSIERGGSWGDLH 911


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/987 (32%), Positives = 498/987 (50%), Gaps = 94/987 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L+L+DGS++IYRA++A   LS    G P +A+ GF   L ++++    E    +
Sbjct: 1   MSSREPLYLIDGSAYIYRAYHAIRPLSNAA-GQPTHAVYGFTTTLLRVIR----EKTPRY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+ +D     FR+EIYP YKANRP++P  L  Q+P ++    A+ I  +E  G EADD+
Sbjct: 56  LAIAYDSKGPNFRHEIYPAYKANRPEMPADLACQIPYIKEVVSAYHITTLEQAGVEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA            + I+S DKDL+QLV+    L+D +++  +D   V KK+ + P++++
Sbjct: 116 IAAAARRLAGPDQPLIIVSGDKDLLQLVNEWVTLWDPMQDTFMDPAAVAKKYQVSPQQLL 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GDS DN+PG+PG+G KTAA L+ ++G+LE +  N  ++   K RE         
Sbjct: 176 DYFALIGDSSDNVPGVPGVGPKTAAKLIDQFGSLEQLFANLEQVSAAKLREK-------- 227

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                L   R D  +   L                       +L + +      D   + 
Sbjct: 228 -----LAAHRQDAQLARRL----------------------IRLKDDLELPTSLDDYTLP 260

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P   D      K   + TE++    IK+   +                            
Sbjct: 261 PPDQD------KLRQLFTELEFTRLIKSELQAE--------------------------- 287

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             I  D++  I +   + + V  L    +       T ++D   ++ + I+++      D
Sbjct: 288 -KIAADAFQLINSLDQLHELVAILAADPAPLVIDTETTSLDPLQAELVGISLTLAAPGSD 346

Query: 420 TSFK----------VETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHN 468
            S                ++ ++      S   N L   E+   L     ++  LK+GHN
Sbjct: 347 ESEAKASRTAAGENGACWYLPIAHRREDGSAAANQLPLAEVRRALAPLLADDRRLKLGHN 406

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSR 524
           +KYD  VLHR+ + +     D M+ SY++D  R SH +  ++++ L        E+    
Sbjct: 407 LKYDLQVLHRHDLPLAPPLADTMIASYLIDPSRRSHGLDVLSEELLQRRLTSFAEVTDRD 466

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           +       ++ +    ++ E+      LW L +PKL   +L  ++ +++  ++ ++++ME
Sbjct: 467 RRPEAFAHVAPAAAAAYSCEDVAATRLLWQLFQPKLAELELAELFYQVEITLLPILARME 526

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D  +LK+++AE S+ L  L   IY L+G +FN++SP+QLG++LF +LK P G K
Sbjct: 527 RVGILLDGQVLKELAAEFSQELERLSSKIYQLAGVEFNINSPRQLGEVLFERLKLPHGRK 586

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TK     +T     +     + +   I+  R LSK+KSTY D L   IN    R+HT ++
Sbjct: 587 TKGKTGYSTDIRELERLAAYHDLPAAIIAQRNLSKLKSTYVDKLSTLINPADGRIHTSFN 646

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
              T TGRL+S  PNLQNIP++T  G++IR AFI+ P  + ++ADYSQI+LR+LAH +  
Sbjct: 647 QTVTATGRLSSSNPNLQNIPVRTQEGRRIRGAFIAAPGHRFLAADYSQIDLRVLAHYSAD 706

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F+   DIHR  AAEIF VN   V+  MRR AKTINF IIYG+S F LA QLR  
Sbjct: 707 PMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVAKTINFGIIYGMSAFGLAEQLRCS 766

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  +I RYF  + G+  ++E+     R++G+V T+  RR    EINS     R   E
Sbjct: 767 RKEAQVFIDRYFELYRGVKTFMEEIVEQARRDGFVRTLLKRRRQLPEINSSNKLRREFAE 826

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN PIQG+AADI + A I+  + L      T+ LLQIHDEL+FEVPE+E     +++
Sbjct: 827 RTAINTPIQGTAADIIKLAAIACDRELRRKNFNTEALLQIHDELIFEVPEDEQAAVGKLV 886

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNN 971
             +ME        L VPL+VN+K   N
Sbjct: 887 QQAMENVM----ELTVPLRVNLKSGPN 909


>gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 931

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/988 (32%), Positives = 504/988 (51%), Gaps = 74/988 (7%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   L LVDG S  YR+FYA         R   G+P +   GF   L ++L         
Sbjct: 4   QTPTLLLVDGHSLAYRSFYAFAYSREGGLRTSTGIPTSVSFGFLKSLLEVLDK----YTP 59

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV FD    TFR+E    YK+ RP+ P   +  +  ++    A  IP + + GFEAD
Sbjct: 60  THVAVAFDTRQPTFRHEADETYKSGRPETPPEFIEDVENLKQVLTALRIPILVVPGFEAD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEE--KIDIEHVIKKWG 173
           DI+ T + +A ++ + V I+S D+DL QL+        L+   K+   +   E V +K G
Sbjct: 120 DILGTLSRLAPQD-YRVQILSGDQDLFQLIDTDGRVRVLHLNSKDRISEFGPEQVKEKLG 178

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P ++V  +AL GD  DNIPG+ GIG K A  LL+ YG+L+ I  +   I Q K ++ +
Sbjct: 179 IWPWQVVDYKALCGDPSDNIPGVKGIGPKRAVELLERYGSLDEIFDHLDEI-QGKVQQYL 237

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT--T 291
            E    A  S+ +  ++ DVP++   E + L   +   L+  L+ LEF   I +V    T
Sbjct: 238 KEGIPAAHHSQFMARIKCDVPLSPDWESMKLTGFDQAELLPLLEKLEFHSFIAQVRKIQT 297

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                     VV   N T +   A +  +  D  +              +    TP++L 
Sbjct: 298 ALGGIPTEAEVVGAFNPTGDPANAPDEALWFDFALD------PVPSLPAVRIIDTPEQLE 351

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           L R + L+                            G  ++   T ++D   ++ + I  
Sbjct: 352 LLRQELLACP--------------------------GIVAWDTETTSLDPRDAQLVGIGC 385

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +         +  ++ +         G N   + +   L+  +E+ +  K   N KY
Sbjct: 386 CWSEG--------DIAYLPIGHRQ-----GSNLDWELVKQSLQPLWEDPNRPKSLQNCKY 432

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
           D  +   +GI ++G   D ML SYVLD   +SH++A +A   L+       K       I
Sbjct: 433 DLSIFRAHGIRLQGIQFDPMLASYVLDP-EASHNLADLAATHLNLPTTSYKKLLGKEQSI 491

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGI 588
             I  S+V E+   ++    +L  +L  KL     +L  ++ +++ P+  V+ +ME  GI
Sbjct: 492 ADIPISKVAEYCGTDAYCAYRLVPILTEKLQKTDPRLWDLFIQVELPLAQVLEEMEWIGI 551

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D + L+Q S E+ + L SLE+  Y  +GE FNL+SPKQLG +LF KLK       KT 
Sbjct: 552 RVDTEFLRQFSQELEQELQSLEQKAYAQAGETFNLNSPKQLGSLLFEKLKLDIRKTRKTA 611

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T   + +   GD+P+I+ I+++R L+K+KSTY D+LP  +   T RVHT ++   T
Sbjct: 612 TGYSTDASVLEKLEGDHPLIETIVQYRTLAKLKSTYVDALPALVRSDTGRVHTDFNQTVT 671

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S  PNLQNIPI+T+  ++IR+AFI      L +ADYSQIELRILAH+++   L 
Sbjct: 672 ATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQEGWLLTAADYSQIELRILAHLSQEPALL 731

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F +  D+H + A  +  +  ++++ + RR AKTIN+ +IYG+   R A    +  SEA
Sbjct: 732 EGFRSGEDVHTLTARLL--LEKQEITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSEA 789

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +++R+  R+ GI  Y+  T+ FV ++GYVETI GRR ++  ++      +    RAA+
Sbjct: 790 KQFLQRFNERYAGIFAYLRSTEAFVEKHGYVETILGRRRYFPNLSRLTGHRKQAELRAAV 849

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSA+DI + AM+ + + L+     +++LLQ+HDELVFEV   E      +I   M
Sbjct: 850 NAPIQGSASDIIKVAMVRLRQKLQ--NFRSRLLLQVHDELVFEVDPSEWQALKPLIQREM 907

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A    + L +PL V+I++ +NW+E N
Sbjct: 908 EGA----VPLSIPLVVDIQIGHNWKEAN 931


>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
 gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
          Length = 926

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/982 (31%), Positives = 512/982 (52%), Gaps = 80/982 (8%)

Query: 7   LFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  S  YRA Y   + PL++ K  G   +A  GF N L KL+++   E    H AV
Sbjct: 13  LYLIDAMSLAYRAHYIFISRPLINSK--GQNTSAAYGFTNSLLKLIEDHDIE----HAAV 66

Query: 64  IFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD     TFR E+Y DYKANR   PE LL  +P ++   +   IP +E+ G EADD+I 
Sbjct: 67  VFDEGEEDTFRKEMYDDYKANRDPPPEELLENIPYIKEIVEGLDIPVLEVPGVEADDVIG 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
                AE +   V I+S DKD  QL+S    +Y   K     E    +    ++G+ P +
Sbjct: 127 ALAKQAEADDADVVIVSPDKDFKQLLSDKVSIYKPAKGDQDFEIKTGDTFRDEYGLDPAQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V + AL GDS DN+PG+ GIG KTA  LL+EY ++EN++ +A  +  K+ RE + E+AE
Sbjct: 187 FVDMLALMGDSSDNVPGVYGIGEKTAQKLLREYHSVENLIDHADDLSGKRAREGMQEHAE 246

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            ARLS++LV +RT++ + +    L   + +  +L +  + LEF    +R+       +  
Sbjct: 247 EARLSKRLVRIRTELDVGLDWHELQRRELDEEKLTAVFQELEFDSFGDRLGIEGGEGSEE 306

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                      +        E+D +                                   
Sbjct: 307 ETDEDDPDLQFDFGPYEKVQELDPEAV--------------------------------- 333

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  +   +++  +  +L      +F     + D   +  + ++ S+  ++ 
Sbjct: 334 --------DYEVVRTEEELHAFADRLGEEARYAFDAEATSRDPMTADLVGLSFSSEAER- 384

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++             +T T  +L  L      +   K+GHN+KYD L+L +
Sbjct: 385 -------ATYVPTP-------LPDDTPTDAVLDVLGPVLARDT-EKLGHNLKYDLLLLKQ 429

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534
           +G+ + G   D M+  Y++    + H++  +A+  L+Y      +++        + ++ 
Sbjct: 430 HGVEVGGTLFDTMVAHYLVAPEEN-HNLDDVARSVLNYKMVPIADLIGDETDRDSMREVE 488

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                 +A E++++  +L   L  +L    +L V   ++ P++ V++ ME TGI++D D+
Sbjct: 489 VETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDV 548

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++ A + + L  +EE +++L+GE+FN++S +QLG+ILF KL  P  +KT TG+   T 
Sbjct: 549 LDEILAGLEERLSGIEEEVFELAGEEFNINSTQQLGEILFEKLDLPVVSKTPTGKPS-TK 607

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + + Q    ++ I   +L+WR   K+KSTY DSL   ++  T R+HT ++   T TGRL+
Sbjct: 608 ESVLQELSTEHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRLHTSFNQTRTATGRLS 667

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+T++G++IRRAF+      L+SADY+QIELRILA ++    +   F+  
Sbjct: 668 SSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEG 727

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AA ++G++ E V+P+ R  AK +N+ I YGISP+ LA ++R+P  EA D IK+
Sbjct: 728 GDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQRMRMPVDEAQDIIKQ 787

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   +PG+ + + +     +  GY ET+ GRR +  +I+S  S+ R+  ER A+N PIQG
Sbjct: 788 YRKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNARSAAERVAVNMPIQG 847

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + AD+ + AM  +H  L     AT+MLLQ+HDELVFEVP +E+  A  +I   M  A   
Sbjct: 848 TQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPPDELDAAQTMIDDEMRDALPL 907

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
                VP+ V++   +NW E +
Sbjct: 908 D---DVPVTVDMDTGDNWLEAH 926


>gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/982 (34%), Positives = 509/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L+  +     +H  V
Sbjct: 3   KRKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLMKILEEEK----PTHMLV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q PL+R    A+ I   E++ +EADDII T
Sbjct: 58  AFDAGKTTFRHKTFEEYKGGRQKTPPELSEQFPLLRELLNAYQIRFYELENYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE EGF V +IS D+DL QLVS    +  T K     E    E V +K+G+ P+++
Sbjct: 118 LCAKAENEGFEVKVISGDRDLTQLVSDHVTVDITKKGITDVESYTPETVREKYGLAPQQI 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PGIG KTA  LL+E+G++ENIL +  +I   K           
Sbjct: 178 IDLKGLMGDKSDNIPGVPGIGEKTALKLLKEFGSIENILDSIEQISGNK----------- 226

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+      L+++   T   DA   
Sbjct: 227 --------------------------------LKENLEKHRDLALMSKQLATILRDA--- 251

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ L     E +G  ++  I      K   F+SL  + +    E+T   L         
Sbjct: 252 -PIDLSFEDIEYRGYDVDKVI---ALFKELSFNSLLGKMAPQEEEKTAVAL------PEI 301

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
            Y I ++    I++ +              A+  +     +   +  +  AI+       
Sbjct: 302 GYKIVDEVTEAILSDE--------------AALVVEVLESNYHKAPILGFAIA------- 340

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                              +    T T    S    + E+E   K   + K   + L   
Sbjct: 341 ---------------NEHGNFFIRTDTALSSSLFTTWLEDESKKKSVFDGKRAIVSLKWQ 385

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPIDKIS 534
           G+ +RG   D+++ SY+L+  +S+ D+ASIA+  +++     E    K  K  +P +++ 
Sbjct: 386 GVHLRGIQFDLLIASYLLNPSQSTEDVASIAKTKQYVGVQSDEAVYGKGAKQKVPDEQV- 444

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + EH +  +  I  L       L   +   ++  L+ P+  ++++ME  G+++D + 
Sbjct: 445 ---LAEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVER 501

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK++  E+++ L  +E+ IY L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+
Sbjct: 502 LKEMGEELAEQLKEVEQEIYRLAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STS 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            ++ +     + I++ IL +RQL K++STY + L   +++ T +VHT ++ A T TGRL+
Sbjct: 560 AEVLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIPI+ + G+KIR+AFI   P   + SADYSQIELR+LAHIA    L   F +
Sbjct: 620 STEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRH 679

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IF V+ E+V+P MRR AK +NF I+YGIS + L+  L I R EAA++IK
Sbjct: 680 GLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIK 739

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+ +Y++      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 740 RYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQ 799

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI + K L+   +  +MLLQ+HDEL+ E P++EI    QI+   ME A  
Sbjct: 800 GSAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENA-- 857

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + LRVPLKV+      W + 
Sbjct: 858 --VQLRVPLKVDYHFGPTWYDA 877


>gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii]
 gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii]
          Length = 881

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/978 (32%), Positives = 500/978 (51%), Gaps = 105/978 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L+L+DGS++IYRAF+A P LS    GL  NA+ GF  ML K+L++ R +    + AV+
Sbjct: 2   PTLYLIDGSAYIYRAFFALPPLSNSK-GLQTNAVYGFTTMLLKVLRDHRPD----YVAVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    T R+E + DYKA RP +P+ +  Q+P +    +A  +P I   G+EADD+I T 
Sbjct: 57  FDEKGPTHRHEAFKDYKAQRPPMPQGMSAQIPYIHRVVEALSLPVIRQAGYEADDLIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               E EG  V I+++DKD+ QL++P T +YD VK++         ++G+ P ++V +  
Sbjct: 117 ARKGEVEGLEVVIVTSDKDMFQLLTPKTRIYDPVKDKWFGEADSQGRFGVEPARVVEIMG 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPG+ GIG KTA  L+ ++G +E +L     +   K ++ +LE  E AR+S+
Sbjct: 177 LMGDTSDNIPGVKGIGEKTAVKLITQFGTIEELLSRIEEVTPAKTKKLLLEQGEQARMSK 236

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  ++ D                                                P+  
Sbjct: 237 QLATIQLDC-----------------------------------------------PLEF 249

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
             +  + K    ET +   + ++  +F +L    +K    +TP++  L            
Sbjct: 250 VPDHFQAKAPQTETLV---SLLRELEFMTL----AKAFQGETPEQNRL------------ 290

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                +I +      +++K           +        +     A+   D         
Sbjct: 291 GAEVEQIRDAVAADAFLKKQPAAAMLGIACVLTGEPGVRADIRGCALGRFDGS------- 343

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                         +       ++    L +   +   LK   ++K   L LHR GI M 
Sbjct: 344 --------------AAFVQGEARDWPQPLVECLRDGSKLKAVQDLKPLLLALHRQGIDMP 389

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-----RKEILKSRKSSIPIDKISDSQV 538
           G + D M+  Y+L+  R +H + +IA   LSY      R++  K  +S   +D      +
Sbjct: 390 GPYFDTMVADYLLNPNRRAHTLEAIAMDLLSYQLGAGEREDTSKGPQSLFDVD----EAL 445

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                E + V  ++  +LR +L  +  L +++ ++ P++ V++++E  G  +D   L+ +
Sbjct: 446 VRRTGEAAAVTAKVAPMLRERLKEQGSLSLFQDVEMPLVPVLAEIERNGFLLDVAGLQAL 505

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+   L  +  +IY L G +FN+ SPKQL  +LF  L      KTKTG   +T +D  
Sbjct: 506 SKELEHELEQMVGSIYRLGGGEFNIGSPKQLATVLFETLGLKPLRKTKTGY--STDEDTL 563

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                 + +   IL +R L+K+KSTY D+LP  +N  T+R+HT  +     TGRL+S +P
Sbjct: 564 TQLASQHELPAQILNYRTLTKLKSTYVDALPQLVNPETKRLHTSLNQTVAATGRLSSTDP 623

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP+K D G +IR AFI+PP  +L+ ADYSQ+E RILAH+++   L QVFE   DIH
Sbjct: 624 NLQNIPVKGDYGLRIREAFIAPPGHQLLCADYSQVEPRILAHLSQDPRLLQVFEKGEDIH 683

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A EIF +   +V+  MRR AK++ F I+YGISPF LA+ + +P+++A  YI+ +F +
Sbjct: 684 MATAMEIFNLPAGEVTRDMRRAAKSVVFGIVYGISPFGLASNIGVPQADAKKYIETFFEK 743

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F  +   +++  +  +  GY  TI GRR    E+     S R + ER A+N+PIQGSAAD
Sbjct: 744 FAAVRALMDRNIDDGKTKGYTTTILGRRRPIPELQGGDPSQRGVGERMAVNSPIQGSAAD 803

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + AMI VH+ L++     KM+LQ+HDEL+FEVPE+E+  A Q++   ME A    + L
Sbjct: 804 LIKVAMIKVHQRLQNELPRCKMILQVHDELIFEVPEQELEQAKQLVKAEME-ATGAALGL 862

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPLKV++ V  NW+  +
Sbjct: 863 SVPLKVDLGVGLNWRVAH 880


>gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 921

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/984 (31%), Positives = 505/984 (51%), Gaps = 76/984 (7%)

Query: 5   NHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L ++DG +F++RA+YA     L+    G P  A  GF  ML+KLLQ    +   +H A
Sbjct: 2   KRLLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLLQ----DYTPTHVA 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD      R + + DYKANR  +PE L PQ+  V    +  G   ++++G EADDII 
Sbjct: 58  MTFDPGGPLERGKTFEDYKANRKPMPEDLRPQIKEVMETLEKIGFKVLKMEGHEADDIIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPE 177
           T           + I S DKDL QL+          K+      +ID   V ++ GI  +
Sbjct: 118 TLCETYRTIAKEILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGIDVK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     + GD+ DNIPG+ GIG K A+ LLQEY  L+ I  N ++IK    +  + E  
Sbjct: 178 QIPDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKTLDGIYKNLNKIKNPSIQTKLSEQK 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS++L  +R D+ + I  + +   D      I + K+  +  L   +A +   +  
Sbjct: 238 ENAYLSKQLATIRRDLKLGITEKDIETPDYKSDHAIVYFKSQGYNVLSKDLAKSAGKEVP 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V                                                  E  + 
Sbjct: 298 KDAEVT--------------------------------------------DATADESAET 313

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +       +Y  I   +++ +  + L      S    T + +   ++ + I+ S    +
Sbjct: 314 KTIPVGEKGTYKLITTVEELSKICRGLPKSRVLSVDTETTSPNPAMAELLGISFS---NQ 370

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           + T F V         +++     K+   +EI  +L     +    K+G NIKYD +VL 
Sbjct: 371 EKTGFYVSV------KNSASLFQDKSFSLEEIREHLGPVLSS-QVPKVGQNIKYDLIVLE 423

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            +G  +     D ML SYV+      H++  +A+  L+Y      +++ + K    +  I
Sbjct: 424 NHGFILNNIQFDTMLASYVIQPEGRRHNMDVLAKDLLNYDTITYDDLVGTGKKKKELTDI 483

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              QV E+A E++++  +L+ + R K+    +  +   ++ P+I V+++ME TGI +D  
Sbjct: 484 DPEQVAEYAAEDADITFRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVP 543

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK  +  KT+TG + T 
Sbjct: 544 YFEELARDFDREIRHLESEIHRQAGRSFNIASTKELQKILFDDLKLKTVKKTQTG-YSTD 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++  G++PI++ +L++R+ +K+KSTY D+LP  +N RT R+HT Y+     TGRL
Sbjct: 603 HEVLEELL-GEHPIVEKLLDYRKYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIAATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+   G+ +R+ F       +++S DYSQIELRI+AHI+K   + + + 
Sbjct: 662 SSTDPNLQNIPIRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIMAHISKDPAMLEAYN 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIH   AA ++GV  ++V+P+MR  AK +NFS+IYG++P+ L+  LRIPR EA  +I
Sbjct: 722 HGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLSRNLRIPRDEAKSFI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RY  ++PG+  Y++    F  +NGYV+T+ GRR    +INS   S +   +R AIN+P+
Sbjct: 782 ERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPIVDINSTHKSAKEAAKRVAINSPV 841

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG++AD+ + AMI++H+ +E     ++MLLQ+HDELVFEV ++E       +   ME A 
Sbjct: 842 QGTSADMIKIAMINIHEDIEKKHYRSRMLLQVHDELVFEVHKKEKEEFKISMKKHMENAM 901

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L +P+ V  K   NW E +
Sbjct: 902 ----PLDLPILVEGKFGVNWDEAH 921


>gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
 gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
          Length = 936

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/990 (32%), Positives = 508/990 (51%), Gaps = 85/990 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDG +  YRAF+A      R   G P  A+ GF  +L   L   R +    + AV F
Sbjct: 6   LILVDGHALAYRAFFALRESGLRSSRGEPTYAVFGFAQILLTALAEYRPD----YVAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++Y +YKA R + PE   PQ   ++   QA  IP    +GFEADD+I +  
Sbjct: 62  DV-GRTFRDDLYAEYKAGRAETPEEFYPQFERIKQLVQALSIPIYTAEGFEADDVIGSLA 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTC------LYDTVKEEKIDIEHVIKKW-GIPPEK 178
             A ++G    I++ D D +QLV+                    D+E V K++ G+ P +
Sbjct: 121 RQATEQGVDTIILTGDTDTLQLVNEHVRVALANPYGGKTSTTLYDVEQVRKRYDGLEPAQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  L+ L GDS DNIPG+ GIG K A  LL+++G+L+ +L N      K+ +  + E A+
Sbjct: 181 LADLRGLKGDSSDNIPGVRGIGEKGAITLLKQFGSLDKLLDNI-EAAPKRYQHLLREQAD 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF---TKLINRVATTYDCD 295
            AR SR L  + TD P+ + L    L   +   +++ L+ LEF   + LI ++ +     
Sbjct: 240 QARSSRHLATIVTDAPVQLDLAKCRLGVYDRAAVMALLQELEFGVSSNLIKKLPSVVQAA 299

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                P  L                    +++ + F++ S   + ++S  + Q       
Sbjct: 300 TVATLPADL--------------PTAPQGSVQLALFANESASPTMVSSVTSAQ------- 338

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                          + + + + + VQ+L      +F     ++ A  S  + IA++   
Sbjct: 339 --------------IVRDPQALAELVQRLRAAPGFAFDTECTSLQAVGSHLVGIALAIAP 384

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    +  ++ +         G+     ++++ L   F + +  K  HN K+D  V
Sbjct: 385 N--------DAYYVPVGHEE-----GEQLPLADVVAALGPLFADPNIPKFAHNAKFDAEV 431

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-----KEILKSRKSSIP 529
           L   GI + G   D M+ + +L        +  +A   L         ++++      I 
Sbjct: 432 LAGVGIQVAGLAFDTMIAAAMLG---KRQGLKDLAFYELKLPEPPTTIEDLIGRGSKQIS 488

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGI 588
              +   Q   +A  ++   L L   LR +L  +  L  +Y R++ P+IDV++ ME+TGI
Sbjct: 489 FAAVPIEQAAPYAAADALHTLLLTETLRGQLTTDTALRDLYYRVELPLIDVLTDMELTGI 548

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS----GAK 644
            +D + L+++    ++ +  L E IY  +G  FN++S +QL ++LF +L         +K
Sbjct: 549 LLDHEYLRELGKRFAQRIAELTEQIYAKAGGPFNINSGQQLNEVLFERLGINPRDYGLSK 608

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            K+G +  TA+ LE+++    PI  +IL +RQL+K+KSTY D+LP  +N RT R+HT Y+
Sbjct: 609 LKSGGYSITAEVLEELS-QLYPIAADILAYRQLTKLKSTYIDALPQLVNPRTGRIHTSYN 667

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
                TGRL+S  PNLQNIP++T+ G++IRRAF++ P  + ++ADYSQIELR+LAHI+  
Sbjct: 668 QIGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAAPGHRFVAADYSQIELRVLAHISGD 727

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F+  LDIH   A+ +FGV  ++V    RR AKT+ F +IYGIS F LA +L I 
Sbjct: 728 ENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIE 787

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A   I   F +FPGI  YI++T  F RQ+GYV+T+FGRR   +++ +  +       
Sbjct: 788 RDLARQLIDNLFEQFPGIRRYIDQTLAFGRQHGYVQTLFGRRRVMEDLRASGARRAAAER 847

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
             AINAPIQG+AADI + AM+ VH++L +  L T++LLQ+HDEL+ E PEEE+  A+ ++
Sbjct: 848 -EAINAPIQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAEAPEEEVPAAAHLL 906

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M         L VPL VN++   NW+E
Sbjct: 907 REVMSN----TYQLVVPLGVNLETGPNWEE 932


>gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 921

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/984 (31%), Positives = 508/984 (51%), Gaps = 76/984 (7%)

Query: 5   NHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L ++DG +F++RA+YA     L+    G P  A  GF  ML+KLLQ    +   +H A
Sbjct: 2   KRLLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLLQ----DYTPTHVA 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD      R + + DYKANR  +PE L PQ+  V    +  G   ++++G EADDII 
Sbjct: 58  MTFDPGGPLERGKTFEDYKANRKPMPEDLRPQIKEVMETLEKIGFKVLKMEGHEADDIIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPE 177
           T           + I S DKDL QL+          K+      +ID   V ++ GI  +
Sbjct: 118 TLCETYRTIAKEILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGIDVK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     + GD+ DNIPG+ GIG K A+ LLQEY  L+ I  N ++IK    +  + E  
Sbjct: 178 QIPDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKTLDGIYKNLNKIKNPSIQTKLSEQK 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS++L  +R D+ + I  + +   D      I + K+  +  L   +A +   +  
Sbjct: 238 ENAYLSKQLATIRRDLKLGITEKDIETPDYKSDHAIVYFKSQGYNVLSKDLAKSAGKEVP 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V                                    +   S +T      E+   
Sbjct: 298 KDAEVT---------------------------------DATADGSAETKTIPVGEK--- 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I   +++ +  + L      S    T + +   ++ + I+ S    +
Sbjct: 322 --------GTYKLITTVEELSKICRGLPKSRVLSVDTETTSPNPAMAELLGISFS---NQ 370

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           + T F V         +++     K+   +EI  +L     +    K+G NIKYD +VL 
Sbjct: 371 EKTGFYVSV------KNSASLFQDKSFSLEEIREHLGPVLSS-QVPKVGQNIKYDLIVLE 423

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            +G  +     D ML SYV+      H++  +A+  L+Y      +++ + K    +  I
Sbjct: 424 NHGFILNNIQFDTMLASYVIQPEGRRHNMDVLAKDLLNYDTITYDDLVGTGKKKKELTDI 483

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              QV E+A E++++  +L+ + R K+    +  +   ++ P+I V+++ME TGI +D  
Sbjct: 484 DPEQVAEYAAEDADITFRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVP 543

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK  +  KT+TG + T 
Sbjct: 544 YFEELARDFDREIRHLESEIHKQAGRSFNIASTKELQKILFDDLKLKTVKKTQTG-YSTD 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++  G++PI++ +L++R+ +K+KSTY D+LP  +N RT R+HT Y+     TGRL
Sbjct: 603 HEVLEELL-GEHPIVEKLLDYRKYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIAATGRL 661

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+   G+ +R+ F       +++S DYSQIELRI+AHI+K   + + + 
Sbjct: 662 SSTDPNLQNIPIRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIMAHISKDPAMLEAYN 721

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIH   AA ++GV  ++V+P+MR  AK +NFS+IYG++P+ L+  LRIPR EA  +I
Sbjct: 722 HGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLSRNLRIPRDEAKSFI 781

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RY  ++PG+  Y++    F  +NGYV+T+ GRR    +INS   S +   +R AIN+P+
Sbjct: 782 ERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRLIVDINSTHKSAKEAAKRVAINSPV 841

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG++AD+ + AMI++H+ +E     ++MLLQ+HDELVFEV ++E       +   ME A 
Sbjct: 842 QGTSADMIKIAMINIHEDIEKKHYRSRMLLQVHDELVFEVHKKEKEEFKISMKKHMENAM 901

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L +P+ V  K   NW E +
Sbjct: 902 ----PLDLPILVEGKFGVNWDEAH 921


>gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 917

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/984 (30%), Positives = 507/984 (51%), Gaps = 80/984 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L ++DG +F++RA+YA     L+    G P  A  GF  ML+KL+Q    +   SH A
Sbjct: 2   KRLLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLIQ----DYTPSHIA 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD      R +I+ DYKANR  +PE L PQ+  V    +  G   ++++G EADD+I 
Sbjct: 58  MTFDPGGPLERGKIFQDYKANRKPMPEDLRPQIQEVMDTLEKIGFKILKVEGQEADDVIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPE 177
           T           + I S DKDL QL+          K+      +ID   V ++ G+  +
Sbjct: 118 TLCETYRSTAKEILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGVDVK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     + GD+ DNIPG+ GIG K A+ LLQEY +L+ +  N  +IK    +  + E  
Sbjct: 178 QIPDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKSLDGVYKNLEKIKNPGLKTKLSEQK 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS++L  +R D+ + I  + + + D      I + K+  +  L   +A +      
Sbjct: 238 ENAYLSKQLATIRRDLQLGITEKDIEIPDYKSDAAILYFKSQGYNVLSKDLAKS------ 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         K +  + E   D++                              + 
Sbjct: 292 ------------AGKEVPKDPEPAADSS------------------------------EN 309

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++       SY  I +  ++ +  + L      S    T + +   ++ + I+ S    +
Sbjct: 310 VTIPTAEKGSYKLISSIDELSKICRGLLKSRVLSVDTETTSPNPAMAELVGISFS---NQ 366

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           + T F V         + +     K+    E+  +L     +    K+G NIKYD +VL 
Sbjct: 367 EKTGFYVSV------KNNASLFQDKSLNLDEVREHLGPVLSS-QVPKVGQNIKYDLIVLE 419

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            +G  +     D ML SYVL      H++  +A+++L+Y     ++++ + K    +  I
Sbjct: 420 NHGFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYNTITYEDLVGTGKKKKELTDI 479

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              QV E+A E+++V  +L+ + R  +    +  +   ++ P+I V+++ME TGI +D  
Sbjct: 480 DPEQVAEYAAEDADVTFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVP 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     KT+TG   +T
Sbjct: 540 YFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDDLKLRIVKKTQTG--FST 597

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             ++ +   G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+     TGRL
Sbjct: 598 DHEVLEELAGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAATGRL 657

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+   G+ +R+ F       +++S DYSQIELRI+AHI+K   + + + 
Sbjct: 658 SSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHISKDPAMLEAYN 717

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIH+  AA ++GV    V+ +MR  AK +NFS+IYG++P+ L+  LRIPR EA  +I
Sbjct: 718 HGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTPYGLSRNLRIPRDEAKSFI 777

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RY  ++PG+  Y++    F  +NGYV+T+ GRR    +INS   S +   +R AIN+PI
Sbjct: 778 ERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKSAKEAAKRIAINSPI 837

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG++AD+ + AMI +H+ +E     ++MLLQ+HDELVFEV ++E       +   ME A 
Sbjct: 838 QGTSADMIKIAMIKIHEDIEKKHYKSRMLLQVHDELVFEVHKKEKDDFKASMKKHMETAM 897

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L +P+ V  K   NW E +
Sbjct: 898 ----SLDLPIVVEGKFGVNWDEAH 917


>gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273]
 gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273]
          Length = 945

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/981 (32%), Positives = 505/981 (51%), Gaps = 77/981 (7%)

Query: 7   LFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           LF++DG + +YRA++A      +  DG P  A+ GF + L ++ ++        + A  F
Sbjct: 31  LFIIDGMALLYRAYFALLRAGMKTRDGRPTGALYGFMSTLLRIFESYHPR----YLAAAF 86

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++I+P+YKANR   PE +  Q+  +    +A GIP +   GFEADD+I T  
Sbjct: 87  DSREKTFRHDIFPEYKANRTAPPEEMTGQIEPLFELLRALGIPILRTPGFEADDLIGTAA 146

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
              E    ++ I++ DKDL QLV     L    K +     +    V +++G+PPE+   
Sbjct: 147 KEFEDA-CSIYIVTPDKDLAQLVHDGVKLLRPSKNQNELQLMGPREVEEQFGVPPEQFTA 205

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              LTGD+ DNIPG  GIG KTA  LL  +G+LE +  +   +   K R+++  +    +
Sbjct: 206 FLTLTGDTSDNIPGAEGIGPKTATSLLARFGSLEEVYRHIEELTP-KVRKSLEAFRPRLQ 264

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           L   LV +RTD+ + + LE L     +   L+  L  LE   + +R+   +         
Sbjct: 265 LITDLVTIRTDLALHVTLEELRCTTPDRHELLELLGKLELRSIASRLPAAF--------- 315

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                      G+A+E              S   D      +E+T  +       +L   
Sbjct: 316 ----------PGLAVE--------------SPAGDPARTAGAEKTAAETEELGDPRLGA- 350

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  I     ++++V+++      +    T ++D F ++   I+IS    K    
Sbjct: 351 -----DYGMIATEDLLREFVREMLQTDKIAVDTETTSLDTFEAELAGISISAEPAK---- 401

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 FI  +        G        +  L+   EN    K G N+KYD LVL  YG+
Sbjct: 402 ----ARFISFA--------GTGLDRGRSIEILRPLLENPAIPKTGQNLKYDILVLKNYGL 449

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537
            +     D ML SYVLD     H++  +A   L   +    E+  + K+ + I  +  ++
Sbjct: 450 ELGPVGFDTMLASYVLDPD-GKHNLDDMAALHLRLKTTKYDELTGTGKNRLHIYDVEPAK 508

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           + ++A +++++ LQL       L  E +L+ + + ++ P++ V+++ME  GI ID   L+
Sbjct: 509 LTDYACQDADLALQLEGAFTRNLEAEPRLMELCQTIEFPLVSVLAKMEHQGISIDSKHLE 568

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + S  +   L SL E I+  +G  FN+ SPKQL  ILF  L  P+   TKTG + T  + 
Sbjct: 569 ETSMAVGHQLESLRETIHAAAGTDFNIDSPKQLSHILFNVLGLPTKKTTKTG-FSTNVEV 627

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++    +P++ ++L +R L K+K+TY D+LP  +N RT RVHT ++   T TGRL+S 
Sbjct: 628 LEEL-APLHPVVSDLLLYRSLQKLKTTYIDALPKMVNPRTGRVHTSFNQHVTATGRLSSS 686

Query: 717 EPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            PNLQNIPI+T LG++IR+AFI   P   L+SADYSQIELRI A I+    L + F N L
Sbjct: 687 NPNLQNIPIRTPLGREIRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLIEAFRNGL 746

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A  IF  + E ++  MRR AK +NF ++YGI PF L+ +L IPR+EA + I  Y
Sbjct: 747 DIHAETARVIF--DTEDITADMRRKAKEVNFGVLYGIQPFGLSKRLNIPRNEAREIIDTY 804

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
             ++PG+   +E      R+NG+V T+ GRR +  ++ S  S+++   ERAA+N PIQG+
Sbjct: 805 REKYPGLFSSLEGVIEEGRKNGFVTTLLGRRRYLRDLTSRNSNVQKAAERAAMNTPIQGT 864

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM    + ++   + + MLLQ+HDELVFE  E+E      ++  +M +A    
Sbjct: 865 AADIIKCAMNLCSRRIDAASMQSVMLLQVHDELVFETTEDEKEGLKSLVEEAMIEAAALC 924

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
               VP+ V+  +  NW E +
Sbjct: 925 GLKNVPVAVDTGIGKNWLEAH 945


>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 984

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/1019 (32%), Positives = 515/1019 (50%), Gaps = 98/1019 (9%)

Query: 2   QKENHLF-LVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
             E  LF LVDG S  +R++YA         R   G+P +   GF   L +++ + + ++
Sbjct: 18  TAEKPLFILVDGHSLAFRSYYAFAKGRDGGLRTKSGIPTSVCFGFLKSLLEVISSQQPQA 77

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                AV FD    TFR++    YKA+RP+ PE  +P L  ++    A  +P + + G+E
Sbjct: 78  ----MAVTFDLELPTFRHKADDTYKADRPETPEDFIPDLQNLKELLTALNLPVLAVPGYE 133

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKE---------EKID 164
           ADD++AT  + A  EG+ V I++ D+DL QL+ P    T LY + K          E+  
Sbjct: 134 ADDVLATLAHRATDEGYQVKILTGDRDLFQLIDPQKSITVLYLSHKALKSGSSTGLEEYS 193

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            + V  K GI PE++V  +AL GD  DNIPG+ GIG KTA  LL ++G+LE I  +  +I
Sbjct: 194 TQGVKNKLGITPEQVVDYKALCGDKSDNIPGVRGIGEKTAVKLLNDFGSLEGIYASLDQI 253

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           K    +  +    + A  S+ L  L  D P+ + L+   LE  +   L  FL+ LEF   
Sbjct: 254 KGA-VKTKLETGKQDAEHSKYLAQLAFDAPVDVELKAGKLEGFDTSVLKPFLQKLEFEFF 312

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           + ++         N+                                 + SD + + NS 
Sbjct: 313 LKKIDEIQQRFGGNV----------------------------VEDTGTESDPSVEDNSP 344

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI-QQWVQKLETIGS----ASFKIITDTM 399
                   E      Q   +     +I++TKD   Q V  LE   +     ++   T  +
Sbjct: 345 DLSFWTADETEDYQKQAAASCPIQPRIIDTKDKLDQLVDILENCTNIETPVAWDTETSDL 404

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
              +++ + I      +  DT+      +I ++ +      G+N   + +L  L+   E 
Sbjct: 405 KPRNAELVGIGCCWGLEATDTA------YIPIAHNQ-----GQNLDQQTVLEALRPILER 453

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
           + + K+  N+K+D+LVL   GI + G   D ML SYVL+   +SH++ S+ +++    + 
Sbjct: 454 DRYPKVLQNVKFDRLVLRTQGIKLAGVVMDTMLASYVLNPD-NSHNLNSLTERYFPQIQL 512

Query: 519 EILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKP 575
           +  K  K      I ++S   V  +         +L   LR KL     +  +   +++P
Sbjct: 513 KSYKDLKIPKGKTIAELSSKTVANYCGMQVYATFKLVPKLREKLEAIPAIEKLLLEVEQP 572

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  V++QME  GI+ID   LK++S  + K L+ +E+N Y  +GE+FNL SPKQL ++LF 
Sbjct: 573 LEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQNAYKQAGEEFNLGSPKQLSELLFE 632

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL        K     +T     +   GD+P+I  ILE R LSK+KSTY D+LP  ++K 
Sbjct: 633 KLNLDRRKSRKMKTGYSTDHATLEKLQGDHPVIDTILEHRTLSKLKSTYVDALPKLVHKD 692

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           TQR+HT ++   T TGRL+S  PNLQNIPI+T   ++IR+AF+      L+SADYSQIEL
Sbjct: 693 TQRIHTDFNQTITSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLLVSADYSQIEL 752

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RILAH+++   L + + N+ DIH + A  +F    E V+P+ RR  KTINF +IYG+ P 
Sbjct: 753 RILAHLSQEPVLVETYRNNQDIHAVTAKLLF--EKETVTPEERRLGKTINFGVIYGMGPQ 810

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
           R A +  +  +E  ++I R   R+P +  Y+E+ K      GYVETI GRR +++  ++ 
Sbjct: 811 RFAREAGVSAAEGKEFIDRLKQRYPKVFGYLEQMKGDAIAKGYVETILGRRRYFEFNSNR 870

Query: 876 KSSIRNINE-------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
               +  N                    RAA NAPIQGS+ADI + AM+ +H+ L+D++ 
Sbjct: 871 LRDAKGKNPQEIDLDEFKGIGQYDSGLLRAAANAPIQGSSADIIKIAMVKMHEVLQDYQ- 929

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ++LLQ+HDELVFEVP +E       I  +ME A    + L VPL V++    NW E 
Sbjct: 930 -ARLLLQVHDELVFEVPPDEWEELQPKIRETMESA----VELTVPLVVDVSEGENWMEA 983


>gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
 gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
          Length = 886

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/981 (31%), Positives = 508/981 (51%), Gaps = 107/981 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG++ IYRAF+A P L+    G   NA+ GF  ML +L++  +     +H  V 
Sbjct: 2   DKLILIDGNNIIYRAFFAMPPLTNAS-GQQTNAVYGFTTMLLRLIEEHK----PTHMMVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  + +YK  R K P  L  Q PL++   +  G+   EI G+EADDII T 
Sbjct: 57  FDAGKETFRHADFQEYKGGRQKTPPELSGQFPLLKELLKGLGVSQFEIGGYEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  A++ G  V ++S DKD++QL S  T +    K     E    E + +++ + P++++
Sbjct: 117 TRQADEAGRKVMVVSGDKDMLQLASEHTTIAMVRKGVTEIEYYGPEQIKERYNLTPDQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPG+PG+G KTA  LL E+G++E ++     +K  K +E I E+A++A
Sbjct: 177 DLKGLMGDASDNIPGVPGVGEKTALKLLHEFGSVEAVVSRTDELKG-KMKEKIEEHADSA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS+KL  +  +VP+                    L  + FT L                
Sbjct: 236 ILSKKLATIFREVPLEQS-----------------LDEMAFTGL---------------- 262

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                             E      +   +F SL ++ +   S         +   K+  
Sbjct: 263 -----------------NEETAGPALAKLEFKSLIERLNLSTSGAAGDAAESKPEAKIDV 305

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             ++     ++ +       +            + T   +  H+  I +A++T +++   
Sbjct: 306 TLVDATGIAEVADHLAQATVLH-----------VETHGDNPHHADVIGLALATEERQYFL 354

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            F                    + L  E    ++ +  +    K G+++    L LH  G
Sbjct: 355 PF--------------------DVLKSEEAEPVRAWLADSEIPKRGYDLHRIDLALHWQG 394

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISD 535
           I+  G   D+ L +Y+LD   S+  ++ +A K+    L        K  K  +P      
Sbjct: 395 IAFAGAAFDVHLAAYLLDPTESNQTLSGLASKYGLAYLQADEDVFGKGAKYKVP----DV 450

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            ++ EH       + +L  +   +L   ++L ++  L+ P+  +++ ME  GI ++ + L
Sbjct: 451 DKLSEHMARKCLAVSELVPIQEKELAANEMLPLFHDLEMPLSRILADMEKQGIAVNAEDL 510

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  E    +  L + IY+++G +FNL+SPKQLG+ILF KL+ P   KTKTG + T A+
Sbjct: 511 KELGREFEGQIAKLVQEIYEIAGTEFNLNSPKQLGEILFVKLELPVIKKTKTG-YSTDAE 569

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    + I++ IL++R L+K++STY + L   I+  T +VHT+Y      TGRL+S
Sbjct: 570 VLEKL-APYHDIVRLILQYRTLAKLQSTYVEGLLKEISSVTGKVHTYYRQTIAATGRLSS 628

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
             PNLQNIPI+ + G+K+R+ F+   P   +++ADYSQIELR+LAHI+    L + F + 
Sbjct: 629 QYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHD 688

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A ++FGV +++V   MRR AK +NF I+YGIS + L+  L I R EAA +I +
Sbjct: 689 MDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAAAFIDQ 748

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  F G+  Y++      +Q+GYV+T+  RR +  EIN+   ++R+  ER A+N PIQG
Sbjct: 749 YFEVFQGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQG 808

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ + K+L + +L ++MLLQ+HDELVFEVPE+E+    +++   M +A   
Sbjct: 809 TAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVPDVMSQA--- 865

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L VPLK  +    NW E 
Sbjct: 866 -LKLSVPLKSEVSYGENWYEA 885


>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
          Length = 944

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/990 (33%), Positives = 534/990 (53%), Gaps = 65/990 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+D  + IYRA +A     R    GL  +A+ GF N+L ++L+  +     +H A 
Sbjct: 2   KKLFLLDSMALIYRAHFAFINNPRQTSKGLDTSAVLGFINVLLEILKKEK----PTHIAA 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+  Y  YKANRP  PE +   +P +++  +A  IP ++++G+EADD+I T
Sbjct: 58  AFDLSAPTFRHIEYTAYKANRPTQPEGITAGIPYIKMLLKAMNIPILQLEGYEADDVIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-----DTVKEEKIDIEHVIKKWGIPP-E 177
                      + ++++DKD  QL+                 E   +   ++K+GI   E
Sbjct: 118 IAKKLSAPDLEIYMMTSDKDYCQLLEENRIFMFRPASKFSPNEVWGVSKALEKFGIKRVE 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ +  L GD++DNIPG+PG+G KTA  LL+EY N+ENI+ N   +K  K +E++  ++
Sbjct: 178 QVIDMLGLQGDAVDNIPGLPGVGEKTAQKLLEEYDNIENIIANVQNLKG-KLKESVELHS 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS+KL  +  +VP+   L+  +L++ N   L   L  LEF  +  R+        A
Sbjct: 237 DKALLSKKLATIDINVPLVFSLDDFLLQEPNKEDLSDLLDELEFKTIKTRIL------GA 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           + E       T +             +T  T+Q ++LSD T   ++              
Sbjct: 291 SEEEKAAKKPTKKAPATGQMDMFGNVSTPNTTQNTTLSDDTETTSTY------------H 338

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +         Y  I   +  Q  +Q LE      F   T ++ A  ++ + +A+S     
Sbjct: 339 IDNINTKLHQYHLIDTPEKRQSLIQFLENQTEFCFDTETTSLVAIEAELVGLALS----- 393

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
               +  E  ++      +Q        T+ IL   +   E+E+  KIG N+KYD  VL 
Sbjct: 394 ---YYAGEAYYVPFPADKAQ--------TQAILEEFRGVLESENIKKIGQNLKYDITVLK 442

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEILKSRKS-----SIP 529
           +Y I ++G   D ML SY+LD   + H + ++A+K+L+Y+    + L  +KS        
Sbjct: 443 KYNIEIKGECFDTMLASYLLDPD-NRHSMDAMAEKYLNYSPVKIDTLIGKKSTKNTTQGN 501

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGI 588
           +  +   +V E+A E++++ LQL     PK+     L  +++ ++ P++ V++ +E TG+
Sbjct: 502 MRDVEVQKVVEYAGEDADITLQLKEYFAPKVAERPILEKLFKTVEMPLMHVLAHIEATGV 561

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647
           +ID   L + S  + K++  LE+ IY LSGE FN++SP+QLG +LF KL    +  KTKT
Sbjct: 562 RIDTQALAESSEILDKDIKILEQTIYTLSGEVFNIASPQQLGKVLFEKLNLMKNPPKTKT 621

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           GQ+ T  + L ++   DN I++ ILE R+L K+KSTY D+LP  ++K   R+HT Y+ A 
Sbjct: 622 GQYATGEEVLTKL--TDNEIVQQILEIRELQKLKSTYVDALPALVSKIDGRLHTSYNQAV 679

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITP 766
             TGRL+S  PNLQNIPIKT  G++IR+AFI       ++SADYSQIELR++A  ++   
Sbjct: 680 VATGRLSSTNPNLQNIPIKTAKGREIRKAFIPTDDDFVILSADYSQIELRLIAAFSQDET 739

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F N  DIH   A++I+ ++I++V+  MRR AKT NF+I+YG S F L+ QL+I  S
Sbjct: 740 MMEAFNNGTDIHTATASKIYKIDIQEVTADMRRMAKTANFAILYGSSAFNLSAQLKISTS 799

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA   I  Y+  F  + ++ ++     RQ  Y ET  GRR +   IN   + +    ER 
Sbjct: 800 EAKKLIDSYYGEFSAVKKFKDEMIQKARQFEYAETFLGRRRYLAGINGG-AMVSGQAERN 858

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N+PIQG+AAD+ + AMI +H+ +   K+ +KM+LQ+HDELVF+  + EI    + ++ 
Sbjct: 859 AVNSPIQGTAADMIKLAMIDIHRFMMREKMQSKMILQVHDELVFDAHKSEIDFLKENVIK 918

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME A L    L V + V   V  NW E +
Sbjct: 919 LMENALL----LPVRIGVEAGVGKNWLEAH 944


>gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 906

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/976 (31%), Positives = 499/976 (51%), Gaps = 81/976 (8%)

Query: 5   NHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L L+DGS+F++RA+++         DG P  AI G  + + +L    +K+   +    
Sbjct: 3   HKLILMDGSAFLFRAYFSTLKQNLTNQDGFPTGAIFGVISAIKRL----QKQYPEAKIIT 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD     FR++IYP YKA+R      L+ Q+  +    +A G+  + +   EADD+IAT
Sbjct: 59  IFDAKGKNFRHDIYPQYKAHRKPADSELVVQIEPLYEIIRAMGLHFMCVPDVEADDVIAT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  A +      I S DKDLMQLVS      D +K    D + VI+K G+ PE  + L 
Sbjct: 119 LSCYANQNNIKTIIASGDKDLMQLVSANISQLD-MKGTVYDRQGVIEKMGVAPEIFLDLL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           ALTGDS DN+PG+P +G KTA   LQ Y ++  I  NA++IK  K  E +        LS
Sbjct: 178 ALTGDSADNVPGVPSVGPKTAIKWLQTYNDIAGIKENATQIKG-KVGEKLRNNFYLLDLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LVML+ DV +   +      + +  +L    +   F+  + ++      +   I    
Sbjct: 237 RRLVMLKFDVALPCNISD-DESEQDVVKLADLYQQYGFSMWLKQLDNMPMLEQEGI---- 291

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                     Q + +++ TS            ++ L+  SQ   
Sbjct: 292 --------------------------QATEVTESTSN----------MVDVLEDYSQ--- 312

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T ++++      V +L+T  +  F + T ++D  ++  +          D  SF 
Sbjct: 313 -----TLVLDSDVFNAMVNRLKTSKTFVFDLETTSLDYMNATIVGWVFLV----DKNSFY 363

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           V      L+         K    K++L  LK   E+    K+G N+KYD  +L  Y I +
Sbjct: 364 VPVGHDYLN-------APKQLDFKDVLDQLKLILEDVSIGKVGQNLKYDAHILANYQIDL 416

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539
           +G  +D M+ SY L+S  + H+I  +++ +L++      +I    K  I  +++      
Sbjct: 417 QGISDDTMVKSYCLNSVATRHNIDDLSEYYLNHKTIHFDDIAGKGKKQITFNQVDLETAF 476

Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +A E   V   L  +L  +++   KL+ +Y+ L+ P+I V+  ME  GI++D + L   
Sbjct: 477 PYACEYVIVTDLLNHVLDEEIVQYPKLVKLYQNLELPLIKVLLCMERNGIELDMNELSTQ 536

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF--TKLKFPSGAKTKTGQWKTTAQD 656
             +I + +  ++  +++L+G+ FNL SPKQ+  ILF    L      KT  G   T    
Sbjct: 537 QIDIVQQMKDIQAQVFELAGDIFNLESPKQIQQILFEPEGLGLTPLKKTPKGAPSTNE-- 594

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            E +   D+P++  IL +R L+K+ STY ++LP  I+  T R+HT Y  A T+TGRL+S 
Sbjct: 595 -EALKLLDHPLVDLILSYRTLTKLNSTYLEALPKQIDLNTHRLHTSYHQAVTVTGRLSSS 653

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPI++  G +IR AF++     +I+ADYSQIELRI+A +++   L   F +  D
Sbjct: 654 NPNLQNIPIRSKQGARIRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLLDAFNHDKD 713

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H + A+ +F + I +V+ + RR +K INF +IYG+S F L  Q+ +   EA  YI  YF
Sbjct: 714 VHSVTASTMFNMPINEVTKKHRRRSKAINFGLIYGMSAFGLTKQIDVSIIEAKQYIDTYF 773

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +PG+  Y++  K   +  GYVET+ GRR++  +INS    ++    R AINAP+QGS+
Sbjct: 774 DNYPGVLHYMDSIKESAKVWGYVETVMGRRLYLPQINSKNKILQQHALRTAINAPMQGSS 833

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +++M+ +H  + ++    +M++Q+HDELVFEV E +    +  I   M    L   
Sbjct: 834 ADIIKKSMLDIHAWIGENNPDIRMIMQVHDELVFEVSESKADEFAHKIQGLMANVYL--- 890

Query: 957 NLRVPLKVNIKVSNNW 972
            L +PLKVN+ +  +W
Sbjct: 891 -LDIPLKVNVGIGTSW 905


>gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
 gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
          Length = 917

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/984 (30%), Positives = 507/984 (51%), Gaps = 80/984 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L ++DG +F++RA+YA     L+    G P  A  GF  ML+KL+Q    +   SH A
Sbjct: 2   KRLLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLIQ----DYTPSHIA 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD      R +I+ DYKANR  +PE L PQ+  V    +  G   ++++G EADD+I 
Sbjct: 58  MTFDPGGTLERGKIFQDYKANRKPMPEDLRPQIQEVMDTLEKIGFKILKVEGQEADDVIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPE 177
           T           + I S DKDL QL+          K+      +ID   V ++ G+  +
Sbjct: 118 TLCETYRSTAKEILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGVDVK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     + GD+ DNIPG+ GIG K A+ LLQEY +L+ +  N  +IK    +  + E  
Sbjct: 178 QIPDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKSLDGVYKNLEKIKNPGLKTKLSEQK 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS++L  +R D+ + I  + + + D      I + K+  +  L   +A +      
Sbjct: 238 ENAYLSKQLATIRRDLQLGITEKDIEIPDYKSDAAILYFKSQGYNVLSKDLAKS------ 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         K +  + E   D++                              + 
Sbjct: 292 ------------AGKEVPKDPEPAADSS------------------------------EN 309

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           ++       SY  I +  ++ +  + L      S    T + +   ++ + I+ S    +
Sbjct: 310 VTIPTAEKGSYKLISSIDELSKICRGLLKSRVLSVDTETTSPNPAMAELVGISFS---NQ 366

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           + T F V         + +     K+    E+  +L     +    K+G NIKYD +VL 
Sbjct: 367 EKTGFYVSV------KNNASLFQDKSLNLDEVREHLGPVLSS-QVPKVGQNIKYDLIVLE 419

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            +G  +     D ML SYVL      H++  +A+++L+Y     ++++ + K    +  I
Sbjct: 420 NHGFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYNTITYEDLVGTGKKKKELTDI 479

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              QV E+A E+++V  +L+ + R  +    +  +   ++ P+I V+++ME TGI +D  
Sbjct: 480 DPEQVAEYAAEDADVTFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVP 539

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     KT+TG   +T
Sbjct: 540 YFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDNLKLRIVKKTQTG--FST 597

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             ++ +   G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+     TGRL
Sbjct: 598 DHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAATGRL 657

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+   G+ +R+ F       +++S DYSQIELRI+AHI+K   + + + 
Sbjct: 658 SSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHISKDPAMLEAYN 717

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIH+  AA ++GV    V+ +MR  AK +NFS+IYG++P+ L+  LRIPR EA  +I
Sbjct: 718 HGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTPYGLSRNLRIPRDEAKSFI 777

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RY  ++PG+  Y++    F  +NGYV+T+ GRR    +INS   S +   +R AIN+PI
Sbjct: 778 ERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKSAKEAAKRIAINSPI 837

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG++AD+ + AMI +H+ +E     ++MLLQ+HDELVFEV ++E       +   ME A 
Sbjct: 838 QGTSADMIKIAMIKIHEDIEKKHYKSRMLLQVHDELVFEVHKKEKDDFKASMKKHMETAM 897

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L +P+ V  K   NW E +
Sbjct: 898 ----SLDLPIVVEGKFGVNWDEAH 917


>gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
 gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
          Length = 886

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/981 (32%), Positives = 509/981 (51%), Gaps = 107/981 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG++ IYRAF+A P L+    G   NA+ GF  ML +L++  +     +H  V 
Sbjct: 2   DKLILIDGNNIIYRAFFAMPPLTNAS-GQQTNAVYGFTTMLLRLIEEHK----PTHMMVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  + +YK  R K P  L  Q PL++   +  G+   EI G+EADDII T 
Sbjct: 57  FDAGKETFRHADFQEYKGGRQKTPPELSGQFPLLKELLKGLGVSQFEIGGYEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  A++ G  V ++S DKD++QL S  T +    K     E    E + +++ + P++++
Sbjct: 117 TRQADEAGRKVMVVSGDKDMLQLASEHTTIAMVRKGVTEIEYYGPEQIKERYNLTPDQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPG+PG+G KTA  LL E+G++E ++     +K  K +E I E+A++A
Sbjct: 177 DLKGLMGDASDNIPGVPGVGEKTALKLLHEFGSVEAVVSRTDELKG-KMKEKIEEHADSA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS+KL  +  +VP                 L   L  + FT L                
Sbjct: 236 ILSKKLATIFREVP-----------------LEQSLDEMAFTGL---------------- 262

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                             E      +   +F SL ++   +N   +         +  ++
Sbjct: 263 -----------------NEETAGPALAKLEFKSLIER---LNLSTSGAPGDAAESKPEAK 302

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +     T I    D    V  L         + T   +  H+  I +A++T +++   
Sbjct: 303 IDVTLVDATGIAEVADHLAQVTVLH--------VETHGDNPHHADVIGLALATEERQYFL 354

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            F                    + L  E    ++ +  +    K G+++    L LH  G
Sbjct: 355 PF--------------------DVLKSEEAEPVRAWLADSEIPKRGYDLHRIDLALHWQG 394

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISD 535
           I+  G   D+ L +Y+LD   S+  ++ +A K+    L        K  K  +P      
Sbjct: 395 IAFAGAAFDVHLAAYLLDPTESNQTLSGLASKYGLAYLQADEDVFGKGAKYKVP----DV 450

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            ++ EH       + +L  +   +L   ++L ++  L+ P+  +++ ME  GI ++ + L
Sbjct: 451 EKLSEHMARKCLAVSELVPIQEKELAANEMLPLFHDLEMPLSRILADMEKQGIAVNAEDL 510

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  E    +  L + IY+++G +FNL+SPKQLG+ILF KL+ P   KTKTG + T A+
Sbjct: 511 KELGREFEGQIAKLVQEIYEIAGTEFNLNSPKQLGEILFVKLELPVIKKTKTG-YSTDAE 569

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    + I++ IL++R L+K++STY + L   I+  T +VHT+Y      TGRL+S
Sbjct: 570 VLEKL-APYHDIVRLILQYRTLAKLQSTYVEGLLKEISSVTGKVHTYYRQTIAATGRLSS 628

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
             PNLQNIPI+ + G+K+R+ F+   P   +++ADYSQIELR+LAHI+    L + F + 
Sbjct: 629 QYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHD 688

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A ++FGV +++V   MRR AK +NF I+YGIS + L+  L I R EAA +I +
Sbjct: 689 MDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAAAFIDQ 748

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  F G+  Y++      +Q+GYV+T+  RR +  EIN+   ++R+  ER A+N PIQG
Sbjct: 749 YFEVFQGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQG 808

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ + K+L + +L ++MLLQ+HDELVFEVPE+E+    +++   M +A   
Sbjct: 809 TAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVPDVMSQA--- 865

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L VPLK  +    NW E 
Sbjct: 866 -LKLSVPLKSEVSYGENWYEA 885


>gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
 gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
          Length = 1072

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1024 (31%), Positives = 500/1024 (48%), Gaps = 87/1024 (8%)

Query: 4    ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            E+ L L+DG S +YRAF+A P L+   DGLP NA+ GF  ML +LL+  R      +  V
Sbjct: 75   EDKLVLIDGHSLMYRAFFALPPLTTA-DGLPTNAVYGFLTMLLRLLEEERPR----YAVV 129

Query: 64   IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             FD     FR E Y  YK +RP+ P+ L  Q P+V+    A GIP +E  G+EADD++ T
Sbjct: 130  AFDRGLPAFRVERYAAYKGHRPETPDDLRSQFPVVKEILAALGIPMVEHDGYEADDLLGT 189

Query: 124  YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
                A + G   V +++ D+D++QLV     +  T +      + D   + ++ GI P +
Sbjct: 190  LARRAREAGVGRVLLVTGDRDVLQLVGDGIEVLLTRRGISDVHRYDAARIREEMGIDPAQ 249

Query: 179  MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
             + ++AL GD  DNIPG+PGIG KTA  L+Q+ G+LE++L N      KK  + + EYA+
Sbjct: 250  YLDVKALMGDPSDNIPGVPGIGEKTALKLIQQLGDLESVLANPEAAGGKKLPQALQEYAD 309

Query: 239  TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             ARLSR L  +RTD P+    +       +   L   L  LEF  L++R+        A 
Sbjct: 310  QARLSRDLARIRTDAPVDFDPQRWCRRPADAGLLRPLLLRLEFRSLLDRLGLAQRTPQAG 369

Query: 299  IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             E              A  T       +   +    +    +    Q   +     L   
Sbjct: 370  QEAAEPPGEGAGGAAGAPGTATVAQEGVGAGEDEVGAAGARREGGRQEGSREEGAGLPVQ 429

Query: 359  SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP------IAIAIS 412
             +           ++  D+  W+   E +G  +      + D   +        +A+  +
Sbjct: 430  VEP----------LSAGDVAAWLD--EALGRLAAGTAQGSPDPGETDATAAGGDVAVVAA 477

Query: 413  TLDQKDDTSFKVETIFIDLSVHTSQ-----DSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
             L + +        +   L +  +       +        +    +++          G 
Sbjct: 478  WLGEAEGPQGGAGAVLAGLGLAAAGRVGAWLAGEPEDAAGDAAGRVREALS--GRPLAGF 535

Query: 468  NIKYDKLVL---------------------------HRYG--------ISMRGFEDIMLM 492
            ++K     L                            R G        +      D+ L 
Sbjct: 536  DLKPLYRWLLRRAGAAGEDPDPAAQTAQSPEGEGPPARAGRHVRHVRPVLPAPVTDLKLA 595

Query: 493  SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE--HAIENSNVIL 550
            +Y+LD  R+ + +   A+++  +  +E         P D+  D  V        ++ +  
Sbjct: 596  AYLLDPVRNRYHLVDTARQFFGWDLEE--------GPADRPGDPAVCTSSLLGRDAALCA 647

Query: 551  QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            +L   +  +L    L  VY  ++ P++ V++ ME  GI +D+  L+++    ++    L 
Sbjct: 648  RLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFTRRSQELA 707

Query: 611  ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
            E IY+L+G+ FN++S +QLG ILF +L  P   KTKTG + T A+ LE +    +PI + 
Sbjct: 708  EQIYELAGQTFNINSTQQLGQILFERLGLPVVKKTKTG-YSTDAEVLETLAAR-HPIAEL 765

Query: 671  ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
            +LE+R L K++ TY D L  HI     R+HT +      TGRL+S +PNLQNIPI+ + G
Sbjct: 766  VLEYRSLVKLQGTYVDGLAEHIGPDG-RIHTTFQQTVAATGRLSSTQPNLQNIPIRDEPG 824

Query: 731  QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + +RRAF++PP  +L++ADYSQIELR+LAH +    L + F    D+H   A+EIFGV +
Sbjct: 825  RSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDPGLVEAFAQGQDVHARTASEIFGVPL 884

Query: 791  EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            E+V+P+ RR AK +NF + YG + F LA  LRI R++A  +++RYF R+PG+  Y+E+T 
Sbjct: 885  EQVTPEQRRVAKAVNFGLAYGQTDFGLARALRIDRADARRFMERYFERYPGVKRYMEETV 944

Query: 851  NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
               RQ G V T+ GRR    EI      IR   ER AIN PIQG+AADI + AMI VH++
Sbjct: 945  RRARQQGEVTTLLGRRRPVPEIRHRVFHIRQNAERVAINTPIQGTAADIMKLAMIRVHRA 1004

Query: 911  LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
            L +  L  +++LQ+HDEL+ E P+ E+   + ++   ME A      L VPL V +K   
Sbjct: 1005 LAEEGLRARIVLQVHDELLVEAPDAEVAAVAALLRREMEGA----FRLDVPLVVEVKSGA 1060

Query: 971  NWQE 974
            NW E
Sbjct: 1061 NWYE 1064


>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
 gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
          Length = 880

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/985 (32%), Positives = 505/985 (51%), Gaps = 116/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  KK +E     
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLESIDEVSGKKLKEK---- 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                                  L+  +   L+++   T   DA
Sbjct: 232 ---------------------------------------LEEFKDQALMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++  E +G   E  I      K   F++L ++  + ++E           Q
Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGEGSAEAE---------Q 296

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S   IN  + T + +   +            ++F +     +      +  +I     
Sbjct: 297 DQSLEDINVKTVTDVTSDILV----------SPSAFVVEQIGDNYHEEPILGFSIVNETG 346

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     I  D++V +                  K++ EN+   K   + K   + L
Sbjct: 347 -------AYFIPKDIAVES---------------EVFKEWVENDDQKKWVFDSKRAVVAL 384

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPID 531
              GI ++G   D +L +Y+++ G S  D+AS+A+ +  +          K  K ++P  
Sbjct: 385 RWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAVP-- 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             S+  + EH    +  I  L   L  +L     L ++E L+ P+  ++ +ME TG+++D
Sbjct: 443 --SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D LK++  E+   L   EE I++++GE FN++SPKQLG ILF K+  P   KTKTG   
Sbjct: 501 VDRLKRMGEELGTKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTGY-- 558

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I+  IL++RQ+ K++STY + L       + +VHT ++ A T TG
Sbjct: 559 STSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI+K   L + 
Sbjct: 619 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEA 678

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N +DIH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R EA  
Sbjct: 679 FTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGA 738

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RY   F G+  Y+E +    +Q GYV T+  RR +  E+ S   +IR+  ER A+N 
Sbjct: 739 FIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNT 798

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+FE P+EEI    +++   ME 
Sbjct: 799 PIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEH 858

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPLKV+     +W + 
Sbjct: 859 A----LALDVPLKVDFASGPSWYDA 879


>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
 gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
          Length = 889

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/979 (32%), Positives = 498/979 (50%), Gaps = 98/979 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             ++LVDGS++I+RAF+A   LS    GLP NAI GF NM+ KL+ + + E    + A++
Sbjct: 2   KTIYLVDGSAYIHRAFHAVRNLSNSK-GLPTNAIFGFTNMMLKLINDKKPE----YAAMV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y DYKANRP + E L  Q+P ++  T+AF +P +E+QG+EADD+I T 
Sbjct: 57  FDAKGPTFRHEMYKDYKANRPPMDEALAVQIPYIKNVTEAFNMPMLEMQGYEADDLIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AEK+GF V +++ DKD  QLV+  + ++D +K+E   +E + +K G+P         
Sbjct: 117 AKKAEKQGFMVVMVTGDKDFNQLVTNKSVVWDPMKDETRTVESITEKQGLP--------- 167

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
                                 ++   G+  + +     I  K     I E+        
Sbjct: 168 ----------------PDKVIEIMALSGDSSDNIPGVPGIGPKTAIALIQEFG------- 204

Query: 245 KLVMLRTDVPITIPLEHLI--LEDCNGPRLISFLKALEFTKLINRVATTYDCDAA-NIEP 301
                         LE +   +E     +    L+  +    ++    T + DA    +P
Sbjct: 205 -------------SLEGVYEGVETITKKKQKENLQTYKDDAFLSHKLVTIETDAPVEFDP 251

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L I   +++ +A              +F  LS                        + 
Sbjct: 252 EKLRIQEPDSQKLA--------KIFSELEFRDLSK-------------------AYPVKT 284

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            ++   YT +   +D++   + LE  G  +    T  +D   +  + ++ S    +    
Sbjct: 285 DLSKKEYTALTTEEDLEALAENLEKAGVFALDTETTGLDPMQASLVGMSFSYEADR---- 340

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 +  L+              ++ L  L     N    KIG NIKYD +VL R+G 
Sbjct: 341 ----AFYAPLTHDYL--GAPDQVGVEKALEILGPVLSNPEIKKIGQNIKYDWIVLARHGA 394

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
            ++G   D M+ SY+L+    SH +  IA + L +     +E+      +I  +++   +
Sbjct: 395 DLQGVAFDTMVASYLLNPSHRSHGLDQIAMELLEHRMISYEEVCGKGAKAITFNQVPLEK 454

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +A E+++V  Q++ LL+PKL   +LL +++ ++ P++ V+ +ME+ GI +D D L+ 
Sbjct: 455 AVPYACEDADVTFQIYGLLQPKLEKNQLLELFKTVEMPLVRVLVKMEMEGITVDSDQLQA 514

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S E    + S E+ IY L+GE+FN++SP+QLG ILF KL  P   KTK     +T   +
Sbjct: 515 LSKEFQGGMESAEKEIYQLAGEEFNIASPQQLGHILFEKLGLPVQKKTKKKTGYSTDVKV 574

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                  + +   IL +R ++K+KSTY D+L + I+  T RVHT ++   T TGRL+S  
Sbjct: 575 LTTLASQHELPALILRYRSVAKLKSTYVDALQSLIHPETGRVHTSFNQNVTATGRLSSSN 634

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+T  G++IR AFI     ++  ADYSQIELRILAH+++   L ++F++  DI
Sbjct: 635 PNLQNIPIRTPEGKRIREAFIPRKGWEMFCADYSQIELRILAHLSQDEFLIELFKSGEDI 694

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H+  A+E+F +  E V+ +MRR AK INF IIYG+  FRL+ ++ + R  A  YI  YF 
Sbjct: 695 HKRTASEVFELFPEFVTDEMRRQAKAINFGIIYGMGAFRLSNEIGVSRKTAQRYIDNYFV 754

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            + G+ ++IE+T     + G  +T+ GR     +IN+    +    ER A N PIQG+AA
Sbjct: 755 TYKGVKKFIEETIALAHETGMTKTLLGRTRPLPDINAKNRVLMEAAERIATNTPIQGTAA 814

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + AMI V  +LE+  + TKMLL +HDELVFE P EEI  A  +    ME       +
Sbjct: 815 DLIKVAMIKVQNALEEQNMQTKMLLTVHDELVFESPPEEIFQAQVLAEQMMEGV----WD 870

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L V LKVNI+   NW E +
Sbjct: 871 LDVALKVNIESGKNWAEAH 889


>gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
 gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
          Length = 875

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/981 (33%), Positives = 501/981 (51%), Gaps = 119/981 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  YRAF+A PLL     G+  NAI GF  ML KL++  +     +H  V 
Sbjct: 3   NKLVLIDGNSIAYRAFFALPLLHNDK-GIHTNAIYGFTMMLMKLIEEEK----PTHILVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 58  FDAGKTTFRHEVYTEYKGGRQKTPPELSEQFPFLRELLDAYNIRTYELENYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              AEKEGF V IIS D+DL QL S    ++ T K     E+   +HV++K+G+ P ++V
Sbjct: 118 ATKAEKEGFDVVIISGDRDLTQLASERIHVHVTKKGITDMERYTPKHVLEKYGLTPAQIV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPG+PG+G KTA  LL+EYG +E++L +   I  KK +EN        
Sbjct: 178 DLKGLMGDASDNIPGVPGVGEKTALKLLKEYGTVEHVLASLEHISGKKLKEN-------- 229

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                              L+      L+++   T   D     
Sbjct: 230 -----------------------------------LQTYHEQALLSKQLATIRRDV---- 250

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+ L ++         E         +   F+SL D+  + + E               Q
Sbjct: 251 PLTLSLDELAWHSYDAE---RVAALFQELGFTSLMDKIGQSSQE---------------Q 292

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             + + S+  +         + +       +  +     +   +  +  A+         
Sbjct: 293 LSLTDISFVTVQT-------IDEHMLTKEGALVVEVLDENYHQAPIVGFALVNERG---- 341

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  FI              T      S  K++ E+E   K   + K   + L   G
Sbjct: 342 -----HFFIP-------------TDIALASSRFKRWLEDEQCKKSVFDAKRAIVALKWNG 383

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPIDKISD 535
           I ++G + D++L +Y+L+   ++ D+A++A+  ++      E    K  K +IP      
Sbjct: 384 IELKGVDFDLLLAAYLLNPTDANGDVAAVAKTKQYTDVQSDEEVYGKGAKQAIP----PT 439

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + EH +  +  I  L      +L   +   +   L+ P+  +++QME  G+++D D L
Sbjct: 440 NVLAEHLVRKAKAIASLKETYIQELKRNEQFELLVHLELPLTFILAQMEFYGVKVDVDRL 499

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +Q+  E +  L  +E+ IY+L+G  FN++SPKQLG ILF KL+ P   KTKTG   +T+ 
Sbjct: 500 EQMGKEFTAQLEQIEQRIYELAGTTFNINSPKQLGTILFEKLQLPIVKKTKTGY--STSA 557

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +     + II+ IL +RQL K++STY + L   + K T +VHT +  A T TGRL+S
Sbjct: 558 DVLEKLAPYHEIIEQILHYRQLGKLQSTYVEGLMKVVRKDTGKVHTIFQQALTQTGRLSS 617

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L   F + 
Sbjct: 618 TEPNLQNIPIRIEEGRKIRQAFVPSSDDWVIFAADYSQIELRVLAHIANDENLIAAFHHD 677

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIH   A +IF V  ++V+  MRR AK +NF I+YGIS + L+  L I R EAA++I+R
Sbjct: 678 LDIHTKTAMDIFHVKEDEVTAHMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAEFIER 737

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+  Y+E+     +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 738 YFRSYPGVKRYMEEVVQDAKQKGYVTTLLHRRRYLPDITSGNFNVRSFAERTAMNTPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI ++AMI +   L + +L T++LLQ+HDEL+ E P+EEI    +I+   ME A   
Sbjct: 798 SAADIIKKAMIDLANRLHEERLQTRLLLQVHDELILEAPKEEIELLKKIVPDVMENA--- 854

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            ++LRVPLKV+      W + 
Sbjct: 855 -VSLRVPLKVDYHFGPTWYDA 874


>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
 gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
 gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
          Length = 880

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/985 (32%), Positives = 505/985 (51%), Gaps = 116/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  KK +E     
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLESIDEVSGKKLKEK---- 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                                  L+  +   L+++   T   DA
Sbjct: 232 ---------------------------------------LEEFKDQALMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++  E +G   E  I      K   F++L ++  + ++E           Q
Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGEDSAEAE---------Q 296

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S   IN  + T + +   +            ++F +     +      +  +I     
Sbjct: 297 DQSLEDINVKTVTDVTSDILV----------SPSAFVVEQIGDNYHEEPILGFSIVNETG 346

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     I  D++V +                  K++ EN+   K   + K   + L
Sbjct: 347 -------AYFIPKDIAVES---------------EVFKEWVENDEQKKWVFDSKRAVVAL 384

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPID 531
              GI ++G   D +L +Y+++ G S  D+AS+A+ +  +          K  K ++P  
Sbjct: 385 RWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAVP-- 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             S+  + EH    +  I  L   L  +L     L ++E L+ P+  ++ +ME TG+++D
Sbjct: 443 --SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D LK++  E+   L   EE I++++GE FN++SPKQLG ILF K+  P   KTKTG   
Sbjct: 501 VDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTGY-- 558

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I+  IL++RQ+ K++STY + L       + +VHT ++ A T TG
Sbjct: 559 STSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI+K   L + 
Sbjct: 619 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEA 678

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N +DIH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R EA  
Sbjct: 679 FTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGA 738

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RY   F G+  Y+E +    +Q GYV T+  RR +  E+ S   +IR+  ER A+N 
Sbjct: 739 FIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNT 798

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+FE P+EEI    +++   ME 
Sbjct: 799 PIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEH 858

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPLKV+     +W + 
Sbjct: 859 A----LALDVPLKVDFASGPSWYDA 879


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/978 (31%), Positives = 494/978 (50%), Gaps = 120/978 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   L L+DG+S   RAFYA   L    DG+  NA+ GF  ML+KLL   + +    +
Sbjct: 1   MPKPEKLLLLDGNSLANRAFYAL-RLFSTSDGVYTNAVYGFLTMLFKLLDEEQPD----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR  +Y DYKA R   P+   PQL L+R    A  IP   ++ +EADDI
Sbjct: 56  VAVAFDKGRQTFRTALYEDYKATRKAPPDEFRPQLDLLREVLTALNIPWFRVENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           + T    A  EG    I++ D+D +QL+S    +  T K      + D E +  ++G+ P
Sbjct: 116 MGTLARQAAAEGLHTLIVTGDRDALQLISDRVTVVMTKKGITETVRYDPETLKAEYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ L+AL GD+ DNIPG+PG+G KTA  LL +YG ++ +  +   IK    +  + E 
Sbjct: 176 SQIIDLKALMGDASDNIPGVPGVGEKTALKLLADYGTVDGVYAHLDEIKGA-LQAKLREN 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A    +L      + +  P+        +   L              R    Y    
Sbjct: 235 RDKA----ELSRTLATINLDAPV------TFDREAL-------------RRREPNYPQAY 271

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           A  + +                          S  S ++     + +E   ++    +++
Sbjct: 272 ALFQRLEFK-----------------------SLLSRVTPPDGTVAAEALAEQAGAAQVE 308

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            ++   ++                  +L        ++  D  +    +P+ +A+     
Sbjct: 309 IVAARVVDRPGAL-------------RLSGQAPVLARMTADPGNPGRPRPVGLAMGDPPA 355

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                                       L  E L+   +  ++   L +GH++K     L
Sbjct: 356 ---------------------------WLEGEALADPAELLDSGARL-VGHDLKPLYNWL 387

Query: 477 HRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +  GI       D  L +Y+LD  RSS+D+A + ++                  + ++  
Sbjct: 388 YSQGIEPPAPAFDTALAAYLLDPSRSSYDLADLCRQH----------------GLGELPP 431

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +     ++V+ +L   +  +L  + +  +Y  ++ P++ ++++ME  G+ ID   L
Sbjct: 432 GDTPDLWATRASVLPELHRRMEAELAAQGVDRLYREVELPLMPILAEMEAVGVGIDPAAL 491

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++S E+ + +L + + IY+L+G +FN+SSPKQLGD+LF KL  PSG KTK+G + T A+
Sbjct: 492 HEMSVELERRILQVSQEIYELAGMQFNISSPKQLGDVLFGKLGLPSGKKTKSGGYSTDAE 551

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++     PI   +L++R L+K+K TY D+L   I  R  R+HT ++     TGRL+S
Sbjct: 552 VLEELAAA-YPIAARVLDYRTLTKLKGTYVDALGQLI-ARDGRIHTTFAQTVAETGRLSS 609

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIPI+ + G++IR+AF++ P   L+SADYSQIELR++AH +    L + F +  
Sbjct: 610 KDPNLQNIPIRIEEGRRIRKAFVARPGCVLLSADYSQIELRVVAHFSGDPALREAFLHDQ 669

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   AAE+FGV +++V+P+MRR AK +NF +IYG + F LA  + I R+EA  +I+ Y
Sbjct: 670 DIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLIYGQTDFGLARSVGISRAEARAFIETY 729

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F +F G+  Y+E+ K   R+ GYV T+ GRR    EIN    +IR   ER AIN PIQG+
Sbjct: 730 FAKFAGVRRYMEEKKAEAREKGYVTTLDGRRRPLPEINHRVFTIRQNAERMAINTPIQGT 789

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ +RAMI+V +++ +  L+ +M+LQ+HDELVFE P  E+   ++++   ME A    
Sbjct: 790 AADLMKRAMIAVRRAMREEGLSARMILQVHDELVFECPVGEVDRLARLVRREMEGAM--- 846

Query: 956 INLRVPLKVNIKVSNNWQ 973
             L VPLKV +KV  +W 
Sbjct: 847 -KLDVPLKVEVKVGPDWY 863


>gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39]
          Length = 959

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1000 (29%), Positives = 492/1000 (49%), Gaps = 67/1000 (6%)

Query: 1   MQKENH-LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M   +  L L+DG S  +RA+YA         R   G+P +   GF   L +++   + E
Sbjct: 1   MSSNSPVLILIDGHSLAFRAYYAFGKSRNGGLRTSTGIPTSVCFGFIKSLLEVIDTYKPE 60

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                 A+ FD    TFR+E   +YKA+R + P   +  +  ++   + F IP   + G+
Sbjct: 61  L----VAIAFDRAEPTFRHEADANYKADRAETPADFIEDINNLQELLEGFRIPIFSVAGY 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKIDIEHV 168
           EADD++ T        G+ V I+S D+DL QL+                   ++     V
Sbjct: 117 EADDVLGTLANRGSAAGYQVKILSGDQDLFQLIDEQKQITVLHLSHGKGSSPQEFAAAQV 176

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +K  I PE++V  +AL GD  D IPG+ GIG KTA  LL EYG+L++I  + ++IK   
Sbjct: 177 YEKLSIKPEQVVDYKALCGDKSDCIPGVRGIGEKTAVKLLAEYGSLDSIYESVNQIKGA- 235

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
               + +  E A  S+ +  +  DVP+ I  E   L+  +   LI  LK LEF   IN++
Sbjct: 236 IANKLKQGQELAYHSQTMARIICDVPLDINWEDCQLQGFDSQELIPLLKQLEFHGFINKI 295

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                                       + EI+   +  +        + +  N ++   
Sbjct: 296 NQLQSQFKG-----------------LFDVEINSSISASSPPTELEISENNDNNEDEDVW 338

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI----GSASFKIITDTMDAFHS 404
               E     ++    +     I   + +   V +L+T        ++   T +++   +
Sbjct: 339 FFSAEDTTLETKAIAPSIHPQIIQTPEALAILVNRLKTHINPEKPVAWDTETTSLEPRDA 398

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
             + I      +  D +      +I L+      + G+    +++L  L+   E+E + K
Sbjct: 399 NLVGIGCCWGSELSDLA------YIPLNH-----TQGEMLNIEQVLEALRPILESEEYPK 447

Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEI 520
              N K+D+L+L   GI+++G   D ML SY+++   SSH++  ++ ++L       +  
Sbjct: 448 TLQNAKFDRLILRSQGITLKGVVFDTMLASYIINP-ESSHNLTDLSLRYLPDLGIVAQSY 506

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDV 579
            +       I  +  + V  +   +     Q+   ++  L    +L  +  ++++P+  +
Sbjct: 507 SQLVPKGKTIADLDINTVANYCGLDVFTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPI 566

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ ME  GI+ID D L Q+S ++ + L +LE+  +  +GE FNL SPKQL ++LF +L+ 
Sbjct: 567 LAGMEFQGIRIDTDYLNQLSQQLGETLDNLEKTSHQAAGEVFNLGSPKQLSELLFDRLQL 626

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
                 KT    +T   + +    D+P+I +ILE+R LSK+KSTY D+LP  +   T R+
Sbjct: 627 DRKKSRKTKTGYSTDATVLEKLKHDHPVINSILEYRTLSKLKSTYVDALPELVRSDTGRI 686

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           HT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AFI      L+SADYSQIELRILA
Sbjct: 687 HTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRILA 746

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H+++   L + +  + D+H + A  +F  + + ++P+ RR  K INF +IYG+   R A 
Sbjct: 747 HLSQEKVLIEAYNTNQDVHSLTAKLLF--DRDGITPEERRLGKIINFGVIYGMGAQRFAR 804

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           ++ +  +    +I R+  ++PG+ EY+E  K      GYVETI GRR +++ +       
Sbjct: 805 EVGVSATAGKQFIDRFNSQYPGVFEYLESQKLAAINQGYVETILGRRRYFEGLKGRDRDR 864

Query: 880 RNINE----RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            N  +    RAA NAPIQGS+ADI + AMI + + L+      ++LLQ+HDELVFEVP  
Sbjct: 865 LNYQDEQMLRAAANAPIQGSSADIIKIAMIKLAEILK--NYQARLLLQVHDELVFEVPLS 922

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           E       I  +ME        L VPL V+I    NW E 
Sbjct: 923 EWEELEYQIKSTMENCLF----LSVPLVVDIHAGTNWMEA 958


>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
 gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
 gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
          Length = 882

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/980 (34%), Positives = 525/980 (53%), Gaps = 110/980 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L ++DG+S I RAFYA P ++ K +GL  NAI GF  ML+K++   +     +H +V
Sbjct: 2   EKKLIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+  Y +YKA R  +P+ L  QL  ++     F I  +EI G+EADDII T
Sbjct: 57  AFDRKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFKINRLEIDGYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  AE +G+ V I++ DKD +QL S  T    T K     E+ +   VI+K+ + P + 
Sbjct: 117 VSKKAEDDGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPTQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PGIG KT   L++E+ ++EN+L N  ++K    ++ I E  E 
Sbjct: 177 IDLKGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLLENTDKLKGS-VKKKIEENKEI 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  S++L  +  DVPI + LE +I  D +       L    +                  
Sbjct: 236 AIQSKRLATIIRDVPIEVDLESMIFGDYDKD---ELLDKFRYFGF--------------- 277

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                       TS  S L D     ++EQ  +K+         
Sbjct: 278 ----------------------------TSLLSRLVDLVDSNDTEQVEEKI--------- 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                     +I+  KDI++++ ++   G    K +    +      I I IS   +K  
Sbjct: 301 ----------EILKLKDIEKFIDEVNEKGQVILKTVRGQGNILEKNIIYIFISVDGEKIY 350

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                     + E+ S L   F N    K G+N+K D + L  Y
Sbjct: 351 Y-----------------------VDSNEV-SKLDSIFSNNEIKKYGYNLKDDYISLKPY 386

Query: 480 GISMRG-FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            I++   + DI +  Y++DS  S S+D ++IA K+LS     ++E+L     S   + + 
Sbjct: 387 NINLENMYFDITISEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLE 446

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + E+  +    + +   ++   L+   +  ++  ++ P+++V+  ME  GI++D+ +
Sbjct: 447 FEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSI 506

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S E  + + +LE+ IY+LSGE FN++SPKQLG ILF KL+ P   KTKTG + T A
Sbjct: 507 LDELSVEFKEIIATLEKEIYELSGEPFNINSPKQLGVILFEKLELPIIKKTKTG-YSTNA 565

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    +PII  I E+RQ+ K+ STY + L N IN  + R+H+ ++   T TGR++
Sbjct: 566 DVLEKLR-DKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQTITTTGRIS 624

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPIK ++G+KIR+ FI+    KL+ ADYSQ+ELR+LAH+++   + + F++ 
Sbjct: 625 STEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHH 684

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+++F V +E V+ ++R  AK +NF IIYG S F LA  L IP  +A +YI+ 
Sbjct: 685 EDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIES 744

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF ++  I E+++ T     ++GY  TI  RR +  EI S     RN  +R A+NAPIQG
Sbjct: 745 YFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQG 804

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI+VHK LE++ L +K++LQ+HDEL+ E  ++EI    +I+   ME A   
Sbjct: 805 SAADIIKIAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENA--- 861

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            +N+ V L V++ V ++W E
Sbjct: 862 -VNIDVHLDVDLNVGSSWYE 880


>gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
 gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
          Length = 978

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/1015 (31%), Positives = 488/1015 (48%), Gaps = 90/1015 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
                  LVDG S  YR+++A         R   G+P +   GF   L +++   + ++ 
Sbjct: 10  STRPTFILVDGHSLAYRSYFAFAKGRDGGLRTKAGIPTSICFGFVKCLLEVMATQQPQA- 68

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
               A+ FD    TFR+E    YKA+R + PE  +P L  +      F IP     G+EA
Sbjct: 69  ---MAIAFDLGEATFRHEADETYKADRKETPEDFIPDLANLHELLNGFNIPIFTAPGYEA 125

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-----------PTTCLYDTVKEEKIDIE 166
           DD++ T        G+ V I++ D+DL QL+            P      T    + + E
Sbjct: 126 DDVLGTLAQRVTAAGYRVKILTGDRDLFQLIDSDKEITVLNFSPDAIKRSTNSITEFEAE 185

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +K G+ P +++  +AL GD  DNIPG+ GIG KTA  LL  YG+L+NI      IK 
Sbjct: 186 QVKEKMGVLPSQIIDFKALCGDKSDNIPGVKGIGEKTAVQLLNTYGSLDNIYAALDEIKG 245

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
              ++ +    E A  SR L  +  DVPI I LE   L+  +   L   L+ LEF   + 
Sbjct: 246 AT-QKKLASGREDADKSRYLATIVLDVPIEINLEDCKLKGFDTSVLSPILEKLEFKSFLG 304

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           ++          +E    +    +   I  ++E+  D       F S SD  +      +
Sbjct: 305 KINDLQQRFGGKVE----EKQEAKTDVINPKSELRDDEDNDL-WFFSASDTAAVPQQSTS 359

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAF 402
           P    +                  I     + + V+ L+T  +     ++   T  ++  
Sbjct: 360 PITPRI------------------INTEAKLTELVKLLQTFTTPDIPVAWDTETTALEPR 401

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
            +  + I      Q D+ +      +I L   T     G+N     +L  L+   E+  +
Sbjct: 402 DADLVGIGCCWGMQPDEVA------YIPLGHKT-----GENLHKDLVLEGLRPILESADY 450

Query: 463 LKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
            K   N K+D+LVL   GI++ G   D ML SY+L+   SSH++  + Q++L    K  L
Sbjct: 451 PKALQNAKFDRLVLKCQGINLAGVVFDPMLASYILNPD-SSHNLMDLGQRYLGLIAKSYL 509

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVV 580
                   I  I    V ++   ++     L   LR +L  +  L  +   +++P+  V+
Sbjct: 510 DLVPKGKTIADIDIPSVADYCGMDAYSTFGLVPKLREELDKIPTLSKLLVEVEQPLEAVL 569

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639
           +QME TG++I+   LK++S  +   L  L+E    ++GE FNL SPKQL  ILF KL   
Sbjct: 570 AQMEYTGVRINSAYLKELSQHLETELARLKEEATKIAGENFNLGSPKQLSQILFEKLGLS 629

Query: 640 -PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                K +TG     A   +      +  ++ I+E+R LSK+KSTY D+LP  +   TQR
Sbjct: 630 TKHSRKIQTGFSTDAATLEKLQEDDKSGFVEAIIEYRTLSKLKSTYVDALPALVRPDTQR 689

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT ++ A+T TGRL+S  PNLQNIPI+T   ++IR+AF+      +++ADYSQIELRIL
Sbjct: 690 VHTDFNQAATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPEAGWLMVAADYSQIELRIL 749

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+++   L Q ++ + D+H +    +F    EK++ + R  AKTINF +IYG+   R +
Sbjct: 750 AHLSQEPILVQAYQQNEDVHTVTGRLVF--EKEKITSEERGIAKTINFGVIYGMGSLRFS 807

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
               I ++ A ++IKR+  R+P +  Y+E+ K      GYVETI GRR ++D  N+    
Sbjct: 808 RSTGIDKNIANEFIKRFNERYPKVFAYLEQVKKEAIALGYVETILGRRRYFDFTNNSLRR 867

Query: 879 IRNINE-------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ++  N                    R+A NAPIQGS ADI + AM+ +H+ L+      +
Sbjct: 868 LKGSNPEDIDLSKLKNLGPYDAGLLRSAANAPIQGSNADIIKIAMVRLHEVLK--NYQAR 925

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LLQ+HDELVFE+P +E       I   ME A    + L VPL V  +V  NW +
Sbjct: 926 LLLQVHDELVFEIPPDEWEELQPQIKSVMENA----VQLSVPLLVEARVGENWMD 976


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
          Length = 936

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/982 (32%), Positives = 502/982 (51%), Gaps = 56/982 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++ ++++D    IYR+++A          G  V+AI GF   L  +      +   +   
Sbjct: 2   KDTIYVLDAYGLIYRSYFAFISRPLTNSKGENVSAIFGFFKSLHSIFTEYNPKLFVT--- 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D    TFR+E+Y +YKA R K P+ L  Q+  +    + F +P +   GFEADD+IA
Sbjct: 59  -ALDSLTPTFRHEMYKEYKATRDKTPDDLHAQIDKIEEILKTFKLPTVRCNGFEADDVIA 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---EEKIDIEHVIKKWGIPPEKM 179
           +   +AEKEG    +IS DKDLMQLVS TT +    K    E  D E+V ++WG+ P+ M
Sbjct: 118 SIAALAEKEGRECVVISGDKDLMQLVSKTTTMLKPGKIKAWEGFDAENVKEEWGVYPDGM 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L +L GDS DN+PGI G+G KTA  LL+EY +L+ I  N   +K    +  I E  E+
Sbjct: 178 LDLLSLIGDSADNVPGIKGVGPKTAVKLLEEYKSLDGIYANTGNLKGA-LKTKIEEGKES 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  S++L+ LR DVP+   L        +                          +  NI
Sbjct: 237 AYFSKELIRLRFDVPVEKDLNAYSTSQMDYEAAARLF---------------ISEELPNI 281

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             +  +    E    + +  + ++T         L + + + + E  PQ+L       L 
Sbjct: 282 AKLYSEKIIAEKNAPSSKENLKQETG--------LFENSEQTSPEMLPQELGTGEEISLP 333

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q   N   Y  +   +++ + V +    G AS+   T + D  +++    +++  +  + 
Sbjct: 334 Q---NKGDYKLVDEAEELFKIVDEALKQGLASYDCETTSEDPLNAEVCGFSLALKEG-EA 389

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV---- 475
             F ++    +L      +   K    K+    + K F +     I HN K+D       
Sbjct: 390 YYFPLKAPCPELG-----EEAPKLIAFKDAKKAVTKLF-DSKMTLIMHNGKFDIQAALSS 443

Query: 476 -LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
            L   GIS     D M+ +++LD  RSS+ +  +A+  L           K       I 
Sbjct: 444 KLAS-GIS-ANLFDTMIAAWLLDPARSSYGMDKLAESILGVKTIRFKDLVKQGQNFSDIP 501

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A E++++  + +    P L    L  ++  L+ P+  ++++MEI GI +  + 
Sbjct: 502 LKEACPYAAEDADITFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEE 561

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   S E+ K L   E++IY L G +FN++SPKQL ++LF + K   G KTKTG   +T 
Sbjct: 562 LTAYSKELGKELEDCEKDIYRLVGHEFNIASPKQLQEVLFEERKLTPGKKTKTGY--STD 619

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             + +    ++P+   IL++R L+K+KSTY D+LP   + +  R+HT +    T TGRL+
Sbjct: 620 TSVLENLASEDPVPAKILDYRALAKLKSTYTDTLPKMTD-KNGRIHTSFIQTGTATGRLS 678

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+ + G+KIR AF +   + LISADYSQIEL ILAH++K   L + F   
Sbjct: 679 SRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNTG 738

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +D+H   A+ IF V+I+ VS  MRR AKTINF ++YG+S FRLA+ LRIPR  A ++IK 
Sbjct: 739 IDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKA 798

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  + G+  ++        Q GYVET+ GRR +   INS     +   ER A+N PIQG
Sbjct: 799 YFATYSGVSGFMANVCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQG 858

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ V K+L+  KL   +LLQ+HDEL+ E  E E      ++   ME     
Sbjct: 859 TAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAAESEREKVMSLVKEKMEGV--- 915

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            I L VPL+V+I+   +W E +
Sbjct: 916 -IKLSVPLRVSIESGMSWGEFH 936


>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
          Length = 880

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/985 (32%), Positives = 504/985 (51%), Gaps = 116/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +  +   +  KK +E     
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLPESIDEVSGKKLKEK---- 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                                  L+  +   L+++   T   DA
Sbjct: 232 ---------------------------------------LEEFKDQALMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++  E +G   E  I      K   F++L ++  + ++E           Q
Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGEDSAEAE---------Q 296

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S   IN  + T + +   +            ++F +     +      +  +I     
Sbjct: 297 DQSLEDINVKTVTDVTSDILV----------SPSAFVVEQIGDNYHEEPILGFSIVNETG 346

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     I  D++V +                  K++ EN+   K   + K   + L
Sbjct: 347 -------AYFIPKDIAVES---------------EVFKEWVENDEQKKWVFDSKRAVVAL 384

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPID 531
              GI ++G   D +L +Y+++ G S  D+AS+A+ +  +          K  K ++P  
Sbjct: 385 RWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAVP-- 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             S+  + EH    +  I  L   L  +L     L ++E L+ P+  ++ +ME TG+++D
Sbjct: 443 --SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D LK++  E+   L   EE I++++GE FN++SPKQLG ILF K+  P   KTKTG   
Sbjct: 501 VDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTGY-- 558

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I+  IL++RQ+ K++STY + L       + +VHT ++ A T TG
Sbjct: 559 STSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI+K   L + 
Sbjct: 619 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEA 678

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N +DIH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R EA  
Sbjct: 679 FTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGA 738

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RY   F G+  Y+E +    +Q GYV T+  RR +  E+ S   +IR+  ER A+N 
Sbjct: 739 FIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNT 798

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+FE P+EEI    +++   ME 
Sbjct: 799 PIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEH 858

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPLKV+     +W + 
Sbjct: 859 A----LALDVPLKVDFASGPSWYDA 879


>gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
 gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
          Length = 877

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/981 (32%), Positives = 503/981 (51%), Gaps = 117/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML ++L++       SH  V 
Sbjct: 3   KKLVLIDGNSIAYRAFFALPLLNNDK-GIHTNAVYGFTMMLMRILEDE----DPSHILVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ + +YK  R K P  L  Q P +R    A+ IP  E++ +EADDII T 
Sbjct: 58  FDAGKTTFRHKTFTEYKGGRQKTPPELSEQFPFIRDLLDAYQIPRYELENYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  AE+EGF V +IS DKDL QL S  T +  T K     E+   EH+ +K+G+ P +++
Sbjct: 118 SLQAEQEGFEVKVISGDKDLTQLSSEHTTVGITRKGITDIEEYTPEHIREKYGLSPGQII 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GDS DNIPG+PG+G KTA  LL+E+  LEN+L +  R+  +K            
Sbjct: 178 DMKGLMGDSSDNIPGVPGVGEKTAIKLLKEFETLENLLGSIDRVSGQK------------ 225

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                          L   L+  +   ++++   T   +A    
Sbjct: 226 -------------------------------LKEKLEEHKDLAVMSKELATITREA---- 250

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV + +   E+ G +   +    +  K   F+SL ++      E+T   L   + +    
Sbjct: 251 PVEVKV---EDVGYSGYDQAKVVSLFKDLGFNSLLEKIGGELPEETAAPLEDIQFETAEN 307

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              +  +                       +F +     +   ++    + ++ +     
Sbjct: 308 ILDDLFADET--------------------AFYVEMLEENYHTAEIAGFSAASGNG---- 343

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  FI   +  S ++              KK+ E+E   KI ++ K  ++ L  +G
Sbjct: 344 -----VYFIPAELALSSET-------------FKKWAEDESKKKIVYDAKRTEVSLRHHG 385

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISD 535
           I ++G   D+++ SY+++   S  D AS+A++     +        K  K  IP    + 
Sbjct: 386 IHLKGVEFDLLIASYIINPSESIEDFASVAKRHGYNGVQTDDAVYGKGAKRKIP----AQ 441

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            ++  H    +  +  L   L  +L   +   ++  L+ P+  +++ ME  G+++D + L
Sbjct: 442 EELAGHLARKAAALEALRDKLEDELKENRQYELFYDLEMPLSLILADMESQGVKVDLERL 501

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  +I++ L  +EE I++L+GE FN++SPKQLG ILF KL  P   KTKTG   +T+ 
Sbjct: 502 QAMGEQINQKLGDIEERIHELAGEAFNINSPKQLGVILFEKLGLPPVKKTKTGY--STSA 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +     + II+ IL++RQL K++STY + L    +K+T +VHT ++ A T TGRL+S
Sbjct: 560 DVLEKLEDKHEIIREILQYRQLGKLQSTYIEGLLKVTDKKTGKVHTRFNQALTQTGRLSS 619

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F   
Sbjct: 620 TDPNLQNIPIRLEEGRKIRQAFVPSEKGWVIFAADYSQIELRVLAHIAGDEKLIEAFRED 679

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H   A E+F V+  +V+  MRRHAK +NF I+YGIS + L+  L I R EA  +I R
Sbjct: 680 QDVHTKTAMEVFHVSEGEVTSNMRRHAKAVNFGIVYGISDYGLSQSLGITRKEAGQFIDR 739

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   +PG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQG
Sbjct: 740 YLESYPGVREYMDDIIQEAKQKGYVSTLLHRRRYLPEITSRNFNLRSFAERTAMNTPIQG 799

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ ++AMI +   L +  L +++LL +HDEL+FE PEEEI    +I+   ME     
Sbjct: 800 SAADVIKKAMIDMADRLREEGLQSRLLLSVHDELIFEAPEEEIEILKRIVPDVMEN---- 855

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            ++L VPLKV+      W + 
Sbjct: 856 TVDLDVPLKVDFSYGPTWFDA 876


>gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
 gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
          Length = 946

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/981 (29%), Positives = 490/981 (49%), Gaps = 90/981 (9%)

Query: 6   HLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LF++DG   IYR+++A      + ++G  V+A+ GF + L  +L+  + +    +  + 
Sbjct: 46  KLFIIDGFGIIYRSYFAFISRPLKDYEGNNVSALFGFISTLLMILREWKPD----YLVIA 101

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+E+YP+YKA R   PE L  Q+P +     A G+P I   G EADDIIAT 
Sbjct: 102 MDEKGPTFRHELYPEYKATRDDAPEDLHAQVPRIMEVLDALGVPHIGKVGMEADDIIATL 161

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKM 179
              A  +G    +++ DKDL+QLV   T      ++ +       ++ V  ++GI  +++
Sbjct: 162 CANATAQGIESVMVTGDKDLLQLVDDMTKALRPPRKGESSYRLFGVKEVEDEFGIRADQI 221

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           +   A+ GDS DN+PGI G+G K A  LL EYG+ E +  +   +     R+ + +  E 
Sbjct: 222 IDYLAILGDSSDNVPGIKGLGEKGAIKLLTEYGSFEVLYDHLDEMSPS-VRKKLEDGREM 280

Query: 240 ARLSRKLVMLRTDVPITIPLEH--LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             LS+KLV LR D+      +     +   +  + I  L+      L+ ++         
Sbjct: 281 GVLSKKLVKLRDDLFTVDSFDSPRFTVSSVDYEKAIPLLEKARAGSLVTQLRKM------ 334

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                  +     +   A+ T        +T                             
Sbjct: 335 ------AENGDGHSDSPAVPTAGKGGYRAETDAAG------------------------- 363

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                                 ++Q L+  G  +F + T  +D   + P+  ++S    +
Sbjct: 364 ------------------VDALFIQALKEKGQVAFDVETTDIDVMKAVPVGFSLSWKAGE 405

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL-SYLKKFFENEHFLKIGHNIKYDKLVL 476
                     ++ L       + GK    ++ + + +KK  EN     IG N+KYD  V+
Sbjct: 406 --------AWYVPL------VAGGKTVSNEKAMKAVVKKHLENPALGVIGQNLKYDYKVM 451

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
            R+G+ +     D M+ +++LDS    +++  +A K+L Y      +          +  
Sbjct: 452 ARWGVRIANPVFDTMVAAWLLDSASGIYNMDKLADKYLGYVTITYDQVVPKGALFSDVPL 511

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +  ++A E+++V  +L+    P L   K+  + + L+ P++ V++ ME+ G+++D D L
Sbjct: 512 DKAVQYAAEDADVTWRLYETFAPMLAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRL 571

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
                EI   +  +   IY+L G +FN++SPKQL  +LF +   P G KT +G   +TA 
Sbjct: 572 IMFGEEIDGRVEKITREIYELCGHEFNINSPKQLQTVLFGERGLPVGRKTASG--PSTAV 629

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           +  +   G +P+   IL++R L K+K+TY D+LP  ++  T RVHT +    T TGRLAS
Sbjct: 630 ETLEKLVGLDPVPALILDYRGLVKLKNTYIDALPEQVDVNTGRVHTTFIQTGTATGRLAS 689

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             PNLQNIPI+ D G++IR AF+       +SADY+QIEL +LAH+     L + F    
Sbjct: 690 RNPNLQNIPIRNDDGRRIRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREAFLAGQ 749

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR  A+ IF V  E V+P  RR AKTINF ++YG+S FRL+ +L I  S+AA++I  Y
Sbjct: 750 DVHRHTASLIFNVKPEDVTPDQRRIAKTINFGVMYGMSTFRLSNELAISHSQAAEFIDSY 809

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+ G+  ++++T+    + G+V T+FG   H  EI S     ++  ER  +N  IQG+
Sbjct: 810 FKRYHGVKTFVDETRKKAEETGFVSTMFGHERHVPEIRSSNRMEKSGAERVVVNTIIQGT 869

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ + +SL+D  +  ++LLQ+HDEL+FEV   +    S ++  +MEKA    
Sbjct: 870 AADIMKLAMLRISRSLKDSGINARLLLQVHDELIFEVASGQEEKLSVLVKDAMEKA---- 925

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           + L VPL+ +++   +W + +
Sbjct: 926 VKLSVPLRSSVETGASWGDMH 946


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/975 (33%), Positives = 513/975 (52%), Gaps = 93/975 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS++IYRA++A   LS  H GLP +AI GF  +L +L++         + AV FD
Sbjct: 6   LYLIDGSAYIYRAYHAIKPLSNSH-GLPTHAIFGFTAILRRLIKERNPR----YLAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR+ +Y  YKANRP +PE L+PQ+P +R    A+ I  +E +  EADD+IA+   
Sbjct: 61  TKGPVFRHRLYGQYKANRPPMPEDLIPQIPYIRKMVAAYRILNLEHEDQEADDLIASVAK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
               +G+ V I+S DKDL+QLVSP   L+D + +  +D   V +K+G+PP  ++   ALT
Sbjct: 121 KMAGQGYRVVIVSGDKDLLQLVSPGITLWDPMNDRVMDEAAVEEKYGLPPSLLLDYFALT 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPG+PG+G K+A                         ++ I E+          
Sbjct: 181 GDSSDNIPGVPGVGPKSA-------------------------QKLIAEHRSL------- 208

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
                                    L + + +L+ +K+I ++    D    + E V L+ 
Sbjct: 209 -----------------------EGLYAVVASLKPSKIIQQIRDNRDAAFLSRELVRLNT 245

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           +               +T     Q+         + +     +      ++     I+  
Sbjct: 246 S--------------AETPGDLEQYRLPEPDIEALRALLLELEFHSLLKEETRPARIDTS 291

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +  + + + +    ++L      +    TD++D   ++ + +++ T D +   ++ +  
Sbjct: 292 RFHLVRHQEQLAALAERLAGASLVAVDTETDSLDPLKARLVGVSLCTEDGE---AWYLPC 348

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH---RYGISM 483
              D     + +          ++ +L+   E+    KIGHN+K+D  VL      GI +
Sbjct: 349 GHRD----EAGELVAGQLPLDRLIEFLRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQL 404

Query: 484 R-GFEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQVQE 540
                D M+ +++L   R ++ +  +  +      + +E+  + KS     ++     + 
Sbjct: 405 ACPLHDTMIGAWLLAPDRRTYKLDDLCGEINLRMTSYEEVTHADKSEDAFCRVPLEAAKN 464

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           ++ E+    L+L+    P+L    LL +   ++ P++ V++ ME  GI++D D L ++SA
Sbjct: 465 YSCEDVYGALRLYQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSA 524

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + L + E +IY  +G  FN++SPKQLG++LF KL+ P G KTKTG W T  + LE +
Sbjct: 525 EFDRRLRTDELSIYQAAGMSFNINSPKQLGEVLFEKLQLPKGRKTKTG-WSTDVKVLENL 583

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
           +  D+ +   IL++R L+K+KSTY D L +  N RT RVHT ++   T TGRL+S  PNL
Sbjct: 584 SF-DHELPALILQYRNLAKLKSTYVDKLASLRNPRTGRVHTSFNQCGTATGRLSSSSPNL 642

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+T+ G++IR AFI+     L++ADYSQI+LR+LAH ++   L   F+   DIHR 
Sbjct: 643 QNIPIRTEEGRRIRSAFIAADGCLLLAADYSQIDLRVLAHYSQDRELIAAFQGGQDIHRR 702

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAEIF V+ E V+ +MRR AKTINF I+YG+S F L++QL + R +A  +I RYF  F 
Sbjct: 703 TAAEIFNVSPELVTAEMRRVAKTINFGIVYGMSSFGLSSQLHVSRKDAQLFIDRYFAHFS 762

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GI +++  T    +++G+V T+ GRR    EINS     R   ER AIN PIQG+AADI 
Sbjct: 763 GIKDFMASTIQQAKKDGFVTTLLGRRRPLAEINSANRVQREFAERTAINTPIQGTAADII 822

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ +H+ L       +MLLQIHDELV EVPE E+   S+++  SME A      LRV
Sbjct: 823 KLAMLRIHRELLRRDFRARMLLQIHDELVLEVPETELDPVSRLLKDSMESAM----PLRV 878

Query: 961 PLKVNIKVSNNWQEE 975
           PL V ++   +  ++
Sbjct: 879 PLVVQLRHGTSLDKD 893


>gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168]
 gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
          Length = 926

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/983 (33%), Positives = 505/983 (51%), Gaps = 74/983 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++ L+++D    IYR++YA         DG  V+A+ GF      +L + +      + A
Sbjct: 8   DSTLYILDSYGLIYRSYYAFINRPLTDKDGKNVSAVFGFFRNFKAVLDHYKPR----YIA 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR+E+Y DYKA R K PE L  Q+P++     A GIP +   GFEADD+IA
Sbjct: 64  AAFDSRKATFRHEMYADYKATRQKTPEDLHAQVPVIEEILTALGIPVLRCDGFEADDVIA 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKM 179
           T   +   E     I+S DKDLMQLV+ TT +    K    E +  + V  +WG+ PE M
Sbjct: 124 TIASVCGAENRCCRILSADKDLMQLVNDTTQILKPDKNGGWEIVGKDGVKAEWGVEPELM 183

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L +L GDS DN+PG+ G+G KTA  LL EYG+L+ I  +A  I        I    + 
Sbjct: 184 LDLLSLIGDSSDNVPGVSGVGIKTALKLLDEYGSLDGIFAHADDISGA-VGNKIRAGKDA 242

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  S+ L+ LR DVP+   +        +       L       +  + A+      +  
Sbjct: 243 AYFSKSLIALRYDVPVDTCVPSFGTVSLDYEAASRLLFRYGVPAVAKQYASVPLPAGSET 302

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E +                                    SK  +   P +   E L K  
Sbjct: 303 EAI-----------------------------------QSKGPTGLIPDEPVFEELTK-- 325

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIG--SASFKIITDTMDAFHSKPIAIAISTLDQK 417
               N   Y  + +   +  ++ ++       A+F   TD++D  H++ +  ++S     
Sbjct: 326 ----NTGDYMAVTSIAVLASYIDEILASEPIEAAFDCETDSLDRIHTRIVGFSLSRRAGT 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTK--EILSYLKKFFENEHFLKIGHNIKYDKLV 475
                    I++ LSV    D+    TL +  +    L++ F         HN K+D  V
Sbjct: 382 G--------IYVPLSV---PDALLTQTLIEKQDAFVQLERLFSVPACTLAMHNGKFDYEV 430

Query: 476 LHRYGI-SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           L   G+   R    D M+ +++LD  RS++ + ++A   L                   I
Sbjct: 431 LRSNGLAEPRCRIADTMVAAWLLDPDRSAYSLEALAADKLGLETIPYTDVVPKGSTFADI 490

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              Q   +A E++++  QL+ L  P+L   KL  ++  L+ P++ ++++ME+ GI I++ 
Sbjct: 491 PLEQAVPYAAEDADLTWQLYRLFLPRLAAAKLGDLFWNLEMPVLPILAEMELDGIHIEKS 550

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L     E++  +  +   IY+L G +FN++S KQL D+LF + K P G KTKTG + T 
Sbjct: 551 ELISYGEELTAEIERIRREIYELVGHEFNVASTKQLQDVLFEERKLPPGKKTKTG-YSTD 609

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
              LE +   D P+ + IL++R  +K+ S+Y D+LP  ++    R+HT +    T TGRL
Sbjct: 610 TGVLETLAALD-PVPRKILDYRLKTKLFSSYVDTLPLMVDG-NDRIHTSFIQTGTATGRL 667

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP++ + G++IR AF + P  +LISADYSQIEL ILAH++    L   F  
Sbjct: 668 SSREPNLQNIPVRDEDGRRIRLAFTAEPGCQLISADYSQIELVILAHLSGDPNLCAAFSG 727

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR  AA IFGV  + V+P MRR AKTINF ++YG+S FRLA  L IPR++AA++I+
Sbjct: 728 GTDVHRATAALIFGVQPDAVTPDMRRTAKTINFGVMYGMSAFRLAGALGIPRTQAAEFIE 787

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  + G+  ++ +  N  +Q+G+VETIFGRR +   INS     ++  ER A+N PIQ
Sbjct: 788 AYFKTYAGVRNFMNEMVNAAQQSGFVETIFGRRRYIRAINSSSKIEKSGAERVAVNTPIQ 847

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI V  +L+      ++LLQ+HDEL+ E P+E     + +I  +ME    
Sbjct: 848 GSAADIVKKAMIDVAAALKKTGSPARLLLQVHDELILECPQESAAETASLIKQTMENV-- 905

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
             ++LRVPLKV++++   W + +
Sbjct: 906 --VSLRVPLKVSVEIGPRWGDFH 926


>gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L]
 gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L]
          Length = 996

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/1017 (31%), Positives = 503/1017 (49%), Gaps = 82/1017 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
           M     L L+DG S  +R+++A         R   G+P +   GF   L +++++    +
Sbjct: 19  MVASPLLILIDGHSLAFRSYFAFAKSRQGGLRTKTGIPTSVCFGFIKSLLEVMESENPNA 78

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                A+ FD    TFR +    YKANR + PE  LP +  ++   Q   IP I   G+E
Sbjct: 79  ----IAIAFDTKEATFRQQADATYKANRTETPEDFLPDVKNLQQLLQGLRIPVITSPGYE 134

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLYD---------TVKEEKID 164
           ADD++AT  + A  +G+ V ++S D+DL QLV+P    T LY          TV   +  
Sbjct: 135 ADDVLATLAHQAIDQGYRVKVVSGDRDLFQLVAPDKGITVLYLSGPFSRGSATVGPTEYG 194

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
           +E V  K G+ P ++V  +AL GD  DNIPG+ GIG KTA  LL+EY NL+NI  +   I
Sbjct: 195 LEEVEAKLGVLPSQVVDYKALCGDPSDNIPGVKGIGAKTAVKLLKEYQNLDNIYASLDTI 254

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           K    ++ +      A  +R L  LR D PI I L+   L+  +   L   L+ LE    
Sbjct: 255 KGA-VKKKLEVGKSDAEHARYLAQLRFDTPIDIDLDQCQLQGFDPQVLKPLLERLELKSF 313

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           I+++             V+ DI T+       +T  + D+   T +     D  S  +  
Sbjct: 314 ISQIDKLQQRFGGV---VLEDIETSAPNDTVSDTVSNTDSDTDTQE----DDDISFFSVA 366

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMD 400
           +T +        +       +     I     + Q V++L+         ++   T  ++
Sbjct: 367 ETEEF-------QEQGSNTGSIQPQIIDTVDKLNQLVEQLKYYTDAGNPVAWDTETSDLE 419

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
              ++ + I      +  D +      +I +         G N     +L  L+   E+ 
Sbjct: 420 PRDAQLVGIGCCWGKEFTDVA------YIPIGHKD-----GTNLDKDIVLESLRPILESS 468

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
            + K+  N K+D+LVL   GI + G   D ML SYVL+   +SH ++ +   +L    + 
Sbjct: 469 DYPKVLQNSKFDRLVLRCNGIQLAGVVFDTMLASYVLNP-ETSHKLSDLGLHYLGIEAQS 527

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMID 578
                     I  +    V ++   ++     +   LR +L     L  +   +++P+  
Sbjct: 528 YNDLVPKGKTIRDLDIPTVADYCGMDAYTTFGIVFKLREELEQIPALQQLLLEVEQPLEP 587

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME  GI+ID+D L+Q S E+ K+L+++++  Y  +GE+FNL SPKQL  +LF KL 
Sbjct: 588 VLAEMEYQGIRIDKDYLQQFSQELEKDLVAIKQQAYQDAGEEFNLGSPKQLSQLLFEKLG 647

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                  KT    +T   +     GD+P++  I+E+R LSK+KSTY D+LP  +   T+R
Sbjct: 648 LDRRKSRKTKTGYSTDATILAKLQGDHPVVDAIVEYRSLSKLKSTYVDALPALMRSDTKR 707

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT ++   T TGRL+S  PNLQNIPI+TD  ++IR+ FI      L+SADYSQIELRIL
Sbjct: 708 VHTDFNQTVTTTGRLSSSSPNLQNIPIRTDFSRQIRKGFIPESGWLLVSADYSQIELRIL 767

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+++   L + ++   D+H + A  +F  + E ++ + RR  K INF +IYG+   R A
Sbjct: 768 AHLSQEPVLVEAYQTQADVHTLTAQMLF--DKEDITAEERRLGKIINFGVIYGMGAQRFA 825

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY--------- 869
            + ++  +E  ++I R   R+P +  Y+E+TK      GYVETI GRR ++         
Sbjct: 826 REAKVSTAEGKEFIDRLNQRYPLVFAYLEETKKKAIAQGYVETILGRRRYFSFGGNSLRR 885

Query: 870 -----------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
                      D++ S        + RAA N+PIQGS+ADI + AMI +++ L+  K   
Sbjct: 886 LQGKPLDQIDLDKLKSINPYDAG-SLRAAANSPIQGSSADIIKIAMIKLYQELQ--KYKA 942

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ++LLQ+HDEL+FE+P +E       I  +ME A    + L VPL V I   +NW E 
Sbjct: 943 RLLLQVHDELIFEIPPDEWEELQLKIRETMESA----VELTVPLVVEIHAGDNWMEA 995


>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
 gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
          Length = 893

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/979 (32%), Positives = 519/979 (53%), Gaps = 101/979 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG++  YRA+YA         G+P NA+ G   ML K ++         + AV F
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSTGIPTNAVYGVARMLVKFIKEHIIPEK-DYAAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++   YKA RPK P++L+ QLP ++   +A G   +E++G+EADDIIAT  
Sbjct: 62  DKKAATFRHKLLEAYKAQRPKTPDLLVQQLPYIKRLIEALGFKVLELEGYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                    + II+ DKD++QLV+    ++  VK     E  D + V +++G+ P ++  
Sbjct: 122 VKGCTFFDEIFIITGDKDMLQLVNEKIKVWRIVKGISDLELYDSKKVKERYGVEPHQIPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L ALTGD IDNIPG+ GIG KTA  LL +Y NLE+I                LE+A    
Sbjct: 182 LLALTGDEIDNIPGVTGIGEKTAVQLLGKYRNLEDI----------------LEHA---- 221

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
             R+L                        R+   L       ++++   T   +A    P
Sbjct: 222 --REL----------------------PQRVRKALLRDREVAILSKKLATLVTNA----P 253

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V +D    + +G      +     +K  +F+S+  +       +                
Sbjct: 254 VEVDWEEMKYRGYDKRKLLP---ILKELEFASIMKELQLYEEAE---------------- 294

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  + + K  +  ++KL+ + S +  + T ++D F+ + + I++S   +     
Sbjct: 295 ---PTGYEIVKDHKTFEDLIEKLKEVPSFALDLETSSLDPFNCEIVGISVSFKPK----- 346

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 +I L    +Q     N     +LS LK+  E+     +G N+KYD  VL   GI
Sbjct: 347 ---TAYYIPLHHRNAQ-----NLDETLVLSKLKEILEDPSSKIVGQNLKYDYKVLMVKGI 398

Query: 482 S-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-----IDKISD 535
           S +    D M+ +Y+L+      ++  ++ K+L Y      +    S P        +  
Sbjct: 399 SPVYPHFDTMIAAYLLEPNEKKFNLEDLSLKFLGYKMTSYQELMSFSSPLFGFSFADVPV 458

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +   ++ E++++  +L+ +L  KL   +L +V+ R++ P+++V+++ME+ G+ +D + L
Sbjct: 459 DKAANYSCEDADITYRLYKILSMKLHEAELENVFYRIEMPLVNVLARMELNGVYVDTEFL 518

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTA 654
           K++S E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG++ T  
Sbjct: 519 KKLSEEYGKKLEELAEKIYQIAGEPFNINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRI 578

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE+I   ++ I+  ILE+R++ K+KSTY D+LP  +N +T R+H  +    T TGRL+
Sbjct: 579 EVLEEI-ANEHEIVPLILEYRKIQKLKSTYIDTLPKLVNPKTGRIHASFHQTGTATGRLS 637

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE 
Sbjct: 638 SSDPNLQNLPTKSEEGKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGDENLVKAFEE 697

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +D+H + A+ I+ V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L IP  EA   I 
Sbjct: 698 GIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTPYGLSVRLGIPVKEAEKMII 757

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P +  YI++     ++ GYV T+FGR+    ++ +   + ++  ER AIN PIQ
Sbjct: 758 SYFTLYPKVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKNTQSEGERIAINTPIQ 817

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI + + L    + ++M++Q+HDELVFEVP+EE      ++ + M     
Sbjct: 818 GTAADIIKLAMIDIDEELRKRNMKSRMIIQVHDELVFEVPDEEKEELVDLVKNKMTNV-- 875

Query: 954 PKINLRVPLKVNIKVSNNW 972
             + L VPL+V+I +  +W
Sbjct: 876 --VKLSVPLEVDISIGKSW 892


>gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
 gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
          Length = 884

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/981 (31%), Positives = 505/981 (51%), Gaps = 109/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S IYRAF+A P L+    G   NA+ GF  ML +LL+  +     +H  V 
Sbjct: 2   DKLMLIDGNSIIYRAFFAMPPLTNSS-GQQTNAVYGFTTMLLRLLEEHK----PTHILVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   +TFR++ Y DYK  R K P  L  Q PL++    AFGI   E+ G+EADDII T 
Sbjct: 57  FDAGKITFRHKGYEDYKGGREKTPPELSQQFPLLKELLTAFGIAQFELDGYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++ GF V I++ DKD++QL S    +  T K     E    E + +++G+ P +++
Sbjct: 117 SKTADEAGFNVLIVTGDKDMLQLASDHVTVGLTRKGVTEVETYGPEQIQERYGLKPLQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD+ DNIPGIPG+G KTA  LL +YG++E +L + + +K  K +E +       
Sbjct: 177 DLKGLMGDTSDNIPGIPGVGEKTALKLLHQYGSVEEVLAHTNELKG-KMKERVE------ 229

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                      D  ++               L +  + +   K ++ VA           
Sbjct: 230 -------THADDARMSKD-------------LATIYRDVTLDKQLDDVA----------- 258

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                       G+  ET       +   +F SL ++ S      +      E       
Sbjct: 259 ----------FGGLQAET---AGPALAKLEFKSLLERLSFSGEVGSTGVDVEEAAAD--- 302

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     +++ + I + V+ L+ +      + T   +  H+  + +  +   Q+   
Sbjct: 303 --------VTVLDEQRISELVEVLDRVDVLH--VETHGDNPHHADIVGLIFAATGQQFFM 352

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +                     + L  +  + ++ +  +    K GH++    L LH +G
Sbjct: 353 TL--------------------DVLQSDAATPIRAWLADPERKKRGHDLHRTDLALHWHG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISD 535
           I   G   D+ L  Y+LD   ++  ++ +A K+    +    +   K  K  +P      
Sbjct: 393 IEFAGAEFDVQLAGYLLDPTDANQTLSGLAAKYGLSSIRPDEEVFGKGAKYKVP----DV 448

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + +H    + VI  L  + + +L   ++  ++  L+ P+  +++ ME  G+ ++ + L
Sbjct: 449 DVLSDHVARKAAVIEALVPVQQAELEKTEMHKLFHELEMPLSRILADMEKQGVLVNVEEL 508

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  E    + +L   IY ++G +FNL+SPKQLG+ILF KL  P   KTKTG + T A+
Sbjct: 509 RALGKEFEAQIATLVSEIYSIAGVEFNLNSPKQLGEILFDKLGLPVIKKTKTG-YSTDAE 567

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    + I++NIL++R ++K++STY + L   I+ +T +VHT++      TGRL+S
Sbjct: 568 VLEKL-APYHDIVQNILQYRTIAKLQSTYVEGLLKEISGKTGKVHTYFRQTVAATGRLSS 626

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
             PNLQNIPI+ + G+KIR+ F+   P   +++ADYSQIELR+LA I+    L + F + 
Sbjct: 627 QFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHD 686

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A+++FGV  E V   MRR AK +NF I+YGIS + L+  L I R EAA +I +
Sbjct: 687 MDIHTKTASDVFGVAAEDVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAARFIDQ 746

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  F G+  Y++      +++GYV+T+  RR +  EIN+   ++R+  ER A+N PIQG
Sbjct: 747 YFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQG 806

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ + K L +  L ++MLLQ+HDELVFEVP EE+ T  +++  +ME A   
Sbjct: 807 TAADIIKLAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAA--- 863

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L VPLK  +   +NW E 
Sbjct: 864 -LELAVPLKAEVSYGSNWYEA 883


>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 880

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/985 (32%), Positives = 506/985 (51%), Gaps = 116/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  KK +E     
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLESIDEVSGKKLKEK---- 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                                  L+  +   L+++   T   DA
Sbjct: 232 ---------------------------------------LEEFKDQALMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++  E +G   E  I      K   F++L ++  + +SE+  Q   LE ++
Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGE-DSEEAEQDQALEEIK 304

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +   + +                        ++F +     +      +  +I     
Sbjct: 305 VETVTDVTSGILV------------------SPSAFVVEQIGDNYHEEPLLGFSIVNETG 346

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     I  D++V +                  K++ EN+   K   + K   + L
Sbjct: 347 S-------YFIPKDIAVES---------------EVFKEWAENDEQKKWLFDSKRAVVAL 384

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPID 531
              GI ++G   D +L +Y+++ G S  D+AS+A+ +  +          K  K ++P  
Sbjct: 385 RWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAVP-- 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             S+  + EH +  +  I  L   L  +L     L ++E L+ P+  ++ +ME TG+++D
Sbjct: 443 --SEDVLSEHLVRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D LK++  E+   L   EE I++++GE FN++SPKQLG ILF K+  P   KTKTG   
Sbjct: 501 VDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTGY-- 558

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I+  IL++RQ+ K++STY + L       + +VHT ++ A T TG
Sbjct: 559 STSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI+K   L + 
Sbjct: 619 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDQNLIEA 678

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N +DIH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R EA  
Sbjct: 679 FTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGA 738

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I +Y   F G+  Y+E +    +Q GYV T+  RR +  E+ S   +IR+  ER A+N 
Sbjct: 739 FIDQYLESFQGVKAYMEDSVQDAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNT 798

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+FE P+EEI    +++   ME 
Sbjct: 799 PIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPQEEIEILEKLVPEVMEH 858

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPLKV+     +W + 
Sbjct: 859 A----LALDVPLKVDFASGPSWYDA 879


>gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2]
 gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/978 (31%), Positives = 501/978 (51%), Gaps = 103/978 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG+S   RAFYA P L+    GL  NA+ GF  ML KLL++ +     +H  V FD 
Sbjct: 5   ILIDGNSIANRAFYAMPPLTNSA-GLHTNAVFGFTTMLLKLLEDEK----PTHVLVAFDA 59

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
             V FR+E Y +YK  R K P  L  Q P+++   +AFGI   E+ G+EADDII T T +
Sbjct: 60  GKVVFRHEGYTEYKGGRAKTPSELSEQFPVMKDLLKAFGISQFELSGYEADDIIGTLTRL 119

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQ 183
           A+++     +++ DKD++QL S    +  T K     E      + +K+G+ P +++ L+
Sbjct: 120 ADEQKVETLVVTGDKDMLQLASDNVTIAITRKGISEVEHFSPAAIDEKYGLKPMQIIDLK 179

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD+ DNIPGIPG+G KTA  +L E+G +E +L N   +K  K +E +  + + A +S
Sbjct: 180 GLMGDASDNIPGIPGVGEKTALKMLHEFGTVEEVLANTESLKG-KMKEKVETHKDDAIMS 238

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL  +  +VP+    E +  E      L    + LEF  LI R+    D + A      
Sbjct: 239 KKLATIFREVPLEHSAEDIRYEGYQPATLADAFRKLEFKSLIERL----DLNGAGA---- 290

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                  N+  A   E++       +   +L D  S +   +                  
Sbjct: 291 -----GSNESAAPAVELNIVVIESDNDGEALKDMLSALQGTE------------------ 327

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                                         +     +   ++ + +A +  D        
Sbjct: 328 --------------------------HGLYVEAIGENPHQAEVLGLAAAVGD--TAYVVP 359

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           V  +    +                  + L+K+ E+    K G +    +L L   GI  
Sbjct: 360 VAALQQPFT------------------AELRKWLEDADKPKNGFDTHKIELALGWRGIEW 401

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQV 538
            G   D+ L +Y+LD   ++  + ++  ++    + +      K  K  +P     +  +
Sbjct: 402 HGAAFDVQLAAYLLDPTDTNLTLNALCDRYGQSSVPHDEAVYGKGAKFKVP----DNETL 457

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             H    ++ + +L  L+R  L    +  +Y  L++P+  +++ ME  GI++++  L+++
Sbjct: 458 HRHLSAKADAVRKLTSLMRADLEKRGMNELYFELEQPLSVILAGMERQGIKVEKAELERL 517

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            +E+   L +    IY L+  +FN+ SPKQLG++LF KL  P   KTKTG + T A+ LE
Sbjct: 518 GSELETKLSAAVSEIYRLAEMEFNIGSPKQLGEVLFEKLGLPVQKKTKTG-YSTDAEVLE 576

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++    + I+  IL +R LSK++STY + L   +   T ++HT+Y      TGRL+S  P
Sbjct: 577 KL-APYHEIVPLILHYRTLSKLQSTYIEGLLKEVRPETGKIHTYYRQTIAATGRLSSQFP 635

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+ + G++IR+AF+   P   +++ADYSQIELR+LAHI+    L + F + +DI
Sbjct: 636 NLQNIPIRLEEGRQIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDI 695

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV+ ++V   MRR AK +NF I+YGIS F L+  L I R EAA +I++YF 
Sbjct: 696 HTKTAMDVFGVSADQVDSNMRRSAKAVNFGIVYGISDFGLSQNLNITRKEAAKFIEQYFE 755

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            F G+ +Y++      R++G+V T+  RR +  +I +   ++R+  ER A+N PIQG+AA
Sbjct: 756 VFQGVRKYMDDIVMQARRDGFVTTLLERRRYLPDIKASNFNLRSFAERTAMNTPIQGTAA 815

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ ++++L +  L ++MLLQ+HDELVFEVPEEE+    +++  +M  A    + 
Sbjct: 816 DIIKLAMVRMNETLRERGLKSRMLLQVHDELVFEVPEEELELMKELVPSTMAGA----LT 871

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLK ++    NW E 
Sbjct: 872 LDVPLKADVNYGVNWYEA 889


>gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425]
 gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425]
          Length = 982

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1020 (31%), Positives = 489/1020 (47%), Gaps = 99/1020 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           +    L LVDG S  +R++YA         R   G+P +   GF   L +++Q  +    
Sbjct: 15  ETNKTLLLVDGHSLAFRSYYAFARGREGGLRTSTGIPTSVCYGFLKSLLEVMQIEQPG-- 72

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             + A+ FD    TFR+E    YK  RP+ PE   P L  ++    A  +P + +  +EA
Sbjct: 73  --YLAIAFDLGVPTFRHEAVESYKDGRPETPEDFKPDLENLKELLAALNLPVLTLATYEA 130

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT--------------TCLYDTVKEEKI 163
           DDII T    A +  + V I+S D+DL QL++P                    T    + 
Sbjct: 131 DDIIGTLARKASQSNYRVKILSGDQDLFQLINPEQGVTVLHLSSTFAPRTPLGTGHPREF 190

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
             E V +K GI P ++V  +AL GDS DNIPG+ GIG KTA  LL ++G+LE I  +  +
Sbjct: 191 GTEQVKEKLGILPSQVVDYKALCGDSSDNIPGVRGIGPKTAVQLLSQFGSLEQIYQSLDQ 250

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           IK    R+ +     +A  S+ L  +  DVP+    +HL L      ++I  L+ LEF  
Sbjct: 251 IKGAT-RQKLESGHASALQSQYLAQIHLDVPLEATPDHLELRGFETSKVIPLLEKLEFQS 309

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
            + +++                                     + +  S L+D    +  
Sbjct: 310 FMGQISRLQQRFGG----------------------GAIAAASEGAAGSDLADNDPDL-- 345

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTM 399
                             P    S   I   + +   V+ L+T        ++   T  +
Sbjct: 346 ----WFFSAADTAAAQAQPAVLISPQIIDTPEKLAALVETLQTCTDPGTPVAWDTETTAL 401

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
               ++ + I        D  +      ++ L       S G N      L  L+   E+
Sbjct: 402 SPRDAQLVGIGCCWGPAPDQIA------YLPLGH-----SQGGNLDLTLALEQLRPLLED 450

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
             + K   N KYD+LVL   G+ ++G   D ML SYVL+    SH++  +++K+L  T +
Sbjct: 451 ARYPKAFQNTKYDRLVLKFQGVHLQGVVFDTMLASYVLNP-EGSHNLTDLSRKYLDITAQ 509

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKPM 576
                 +    +  +S   +  +   +     QL   LR  L+    KLL +   +++P+
Sbjct: 510 SYTDLVEKGQNLADLSVEAIANYCGLDVYATFQLVPKLRADLLDANPKLLDLLLTVEQPL 569

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
             V++ ME  GI+IDQD LKQ+S ++ ++L +LEE  Y L+GE FNL SPKQL ++LF K
Sbjct: 570 EPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERAYGLAGETFNLGSPKQLSELLFNK 629

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           LK       KT    +T     +   GD+P+I  ILE R L+K+KSTY D+LPN +   T
Sbjct: 630 LKLDVKKSRKTKLGYSTDAATLEKMQGDHPVIDLILEHRTLAKLKSTYVDALPNLVRSDT 689

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AFI  P   L++ADYSQIELR
Sbjct: 690 GRVHTDFNQAITATGRLSSSNPNLQNIPIRTEFSRQIRKAFIPEPGWMLVTADYSQIELR 749

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH+++   L + ++   D+H++ A  +  +  E ++P+ RR AK INF +IYG+   R
Sbjct: 750 ILAHLSQEPRLVEAYQQHQDVHKLTAQLL--LEKEDINPEERRLAKIINFGVIYGMGAQR 807

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            A +  +   +A  +I R++ R+P +  Y+++ +      GYVET+ GRR ++   +   
Sbjct: 808 FARESGVSFKQAKGFIDRFYERYPLVFRYLKQMEGQAIALGYVETLLGRRRYFSFDSREL 867

Query: 877 SSIRN---------------------INERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
             +R                         RAA NAPIQGS+ADI + AMI + + L+   
Sbjct: 868 QQLRGKDPDSLAELDLSQLKVSQYDRGQLRAAANAPIQGSSADIIKVAMIKLQQRLQ--P 925

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             T++LLQ+HDELVFE+P  E      +I  +M +A    + L +PL   I    NW E 
Sbjct: 926 YQTRLLLQVHDELVFEMPPSEWEPLRSLIQATMAEA----VPLSIPLLAEIHAGPNWMEA 981


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/983 (32%), Positives = 510/983 (51%), Gaps = 118/983 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML ++L++ +     +H  
Sbjct: 2   DKKKLVLIDGNSIAYRAFFALPLLNNDK-GIHTNAVYGFTMMLQRILEDEK----PTHLL 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR++ + +YK  R K P  L  Q P +R    A+GI   E++ +EADDII 
Sbjct: 57  VAFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPYIRELLDAYGISRYELENYEADDIIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T +  AEK+G+ V +IS DKDL QL S    +  T K     E+    H+ +K+GI  ++
Sbjct: 117 TLSLHAEKDGYEVKVISGDKDLTQLSSDAVTVSITRKGITDIEEYTPAHIEEKYGITADR 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GDS DNIPG+PG+G KTA  LL+E+G LE +L +  ++  KK +E       
Sbjct: 177 IIDMKGLMGDSSDNIPGVPGVGEKTALKLLKEFGTLEELLDSVDKVSGKKLKEK------ 230

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                                                L+      L+++   T   +A  
Sbjct: 231 -------------------------------------LEEFRDQALMSKELATITREA-- 251

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             PV + I   E +G   E  I      K   F+SL ++           +   E+L+++
Sbjct: 252 --PVEIKIEDIEYEGFDKEKVI---NIFKELGFNSLLEKLGGDT------EAVEEKLEEI 300

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +        +                 +F +     +  ++  I  +++  D+ +
Sbjct: 301 EFIIADEIKEEMFTDEN---------------AFYVELLEDNYHYADIIGFSVAN-DKGN 344

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
               K   +  D+                      K + E+E   K  ++ K  ++ L  
Sbjct: 345 FFFSKETALKSDV---------------------FKTWAEDETKKKTVYDAKRSEVSLRH 383

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKI 533
           +G+ ++G + D+ + SY+++  ++  D+ASIA+      +        K  K  IP +K 
Sbjct: 384 HGVHLKGADFDLYIASYLINPSQTIEDMASIAKNHGYNAIQSDEAFYGKGAKRRIPEEK- 442

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              ++  H    +  ++ L   L  +L   +   ++  L+ P+  +++ ME TGI++D +
Sbjct: 443 ---ELAGHLARKAAALMTLKEKLDSELKENQQSELFYDLEMPLSLILADMESTGIKVDLE 499

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            LK +  ++   L  +E+ I++L+GE FN++SPKQLG ILF KL  P+  KTKTG   +T
Sbjct: 500 RLKTMGQDLLSKLDEIEKRIHELAGEAFNINSPKQLGVILFEKLGLPAIKKTKTGY--ST 557

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     + II++IL +RQL K++STY + L   +N  T +VHT ++ A T TGRL
Sbjct: 558 SADVLEKLENSHEIIRDILHYRQLGKLQSTYIEGLLKVVNYETGKVHTRFNQALTQTGRL 617

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + F 
Sbjct: 618 SSTDPNLQNIPIRLEEGRKIRQAFVPSEPGWAIFAADYSQIELRVLAHIANDEKLIEAFI 677

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +DIH   A E+F VN  +V+  MRRHAK +NF I+YGIS + L+  L I R EA  +I
Sbjct: 678 EDMDIHTKTAMEVFHVNANEVTSNMRRHAKAVNFGIVYGISDYGLSQSLGITRKEAGKFI 737

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RY   +PG+ +Y++   +  +Q GYV T+  RR +  EI S   ++R+  ER A+N PI
Sbjct: 738 DRYLESYPGVKQYMDDIIHDAKQKGYVSTLLHRRRYLPEITSRNFNLRSFAERTAMNTPI 797

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI ++AMI +   L   +L  ++LLQ+HDEL+FEVPE+EI T  +I+   ME A 
Sbjct: 798 QGSAADIIKKAMIDMADRLRKEELKARLLLQVHDELIFEVPEDEIETLKKIVPDVMENA- 856

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
              + L+VPLKV+      W + 
Sbjct: 857 ---VELKVPLKVDYSFGPTWFDA 876


>gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
 gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
          Length = 885

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/978 (32%), Positives = 507/978 (51%), Gaps = 108/978 (11%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG+S  +RAFYA PLL+    GL  NA+ GF  ML KLL+  +     +H  V FD 
Sbjct: 5   ILIDGNSIAFRAFYALPLLTNAS-GLHTNAVFGFTTMLLKLLEEEQ----PTHMLVAFDA 59

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
             +TFR+E Y +YK  R K P  L  Q PL++   QAFGI   E+ G+EADDII T T +
Sbjct: 60  GKITFRHEGYSEYKGGRQKTPSELSEQFPLIKELLQAFGISQFELSGYEADDIIGTLTRM 119

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQ 183
           A+++G  V ++S DKD++QL S    +  T K     ++     + +++G+ P +++ L+
Sbjct: 120 ADEQGAEVLVVSGDKDMLQLASDQVTVAITRKGVGDVDRYSPALIHERYGLAPLQIIDLK 179

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GD+ DNIPGIPG+G KTA  LL EYG++E +L + + +K  K +E + ++ + A +S
Sbjct: 180 GLMGDTSDNIPGIPGVGEKTALKLLHEYGSVEGVLEHVADLKG-KMKEKVEQHKDDAIMS 238

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +                          +L +  + +   +  + +A        +   + 
Sbjct: 239 K--------------------------KLATIFREVPLDRGTSEMA----YGGYDRPTLA 268

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E K +    ++  + T  T   + L+  +   +                     
Sbjct: 269 GALRKLEFKSLLERLDLTGEGTGSTVAAAELNVVSVAAH--------------------- 307

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                    +   +      L ++ S   ++I    +   S+ IA+A++T D        
Sbjct: 308 ---------DEDALSALAAGLRSVESVYVEVI--GENPHQSETIAVALATADVIFVVPMA 356

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
                                L    L +++++  +    K G ++   +L L  +GI++
Sbjct: 357 --------------------ELQASALGFVREWLADADMEKAGFDLHRTELSLAWHGIAL 396

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE---ILKSRKSSIPIDKISDSQV 538
           +G   DI L +Y+LD   S+  I+ +  K+ L   + +     K  K  +P   +    +
Sbjct: 397 KGISFDIQLAAYLLDPTDSTQSISGLCGKYGLPTVQADESVYGKGAKFKLPEAGV----L 452

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             H    ++ +  +  + R +L    +  +Y  L++P+  V++ ME+ GI+ D  +++Q+
Sbjct: 453 HGHIASKTDAVRSIAAIQREELEKTGMHKLYYDLEQPLSRVLAGMELQGIRCDASVIEQL 512

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            AE+   +  +   +Y L+G +FN++SP+QLG++LF KL  P   KTKTG   +T  D+ 
Sbjct: 513 GAELESRISDIMTKVYTLAGMEFNINSPRQLGEVLFEKLGLPVIKKTKTGY--STDADVL 570

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     + II +IL +RQL+K++STY + L   I   T ++HT+Y      TGRL+S  P
Sbjct: 571 EKLEPYHEIIPSILLFRQLAKLQSTYVEGLLKEIRPNTGKIHTYYRQTIAATGRLSSQYP 630

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+ + G++IR+AF+   P   +++ADYSQIELR+LAHI+    L + F   LDI
Sbjct: 631 NLQNIPIRLEEGRQIRKAFVPSEPGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDLDI 690

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++FGV  E V   MRR AK +NF I+YGIS F L+  L I R EAA +I++YF 
Sbjct: 691 HTKTASDVFGVRPEDVDANMRRQAKAVNFGIVYGISDFGLSNNLNITRKEAAQFIEQYFA 750

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            F G+  Y++      R +GYV T+  RR +  EI +   +IR+  ER A+N PIQG+AA
Sbjct: 751 AFQGVRRYMDNIVAQARTDGYVTTLLERRRYLPEIKASNFNIRSFAERTAMNTPIQGTAA 810

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ + + L    L ++MLLQ+HDELVFEVP +E+    +++   ME A    I 
Sbjct: 811 DIIKLAMVRMDEQLRARGLRSRMLLQVHDELVFEVPADELELMKELVPQVMESA----IK 866

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLK ++   +NW E 
Sbjct: 867 LDVPLKADVSFGDNWYEA 884


>gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/982 (32%), Positives = 499/982 (50%), Gaps = 48/982 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++ ++++D    IYR+++A          G  ++AI GF   L  +      +   +   
Sbjct: 2   KDTIYVLDAYGLIYRSYFAFISRPLTNSKGENISAIFGFFKSLHSIFTEYNPKLFVT--- 58

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D    TFR+E+Y +YKA R K P+ L  Q+  +    + F +PA+   GFEADD+IA
Sbjct: 59  -ALDSLTPTFRHEMYKEYKATRDKTPDDLHAQIDKIEEILKTFKLPAVRCNGFEADDVIA 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---EEKIDIEHVIKKWGIPPEKM 179
           +   +AEKEG    +IS DKDLMQLVS TT +    K    E  D E+V ++WG+ P  M
Sbjct: 118 SIAALAEKEGRECVVISGDKDLMQLVSKTTTMLKPGKIKAWEGFDAENVKEEWGVYPAGM 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L +L GDS DN+PGI G+G KTA  LL+EY  L+ I  N   +K    +  I E  E+
Sbjct: 178 LDLLSLIGDSADNVPGIKGVGPKTAVKLLEEYKTLDGIYANTGNLKGA-LKTKIEEGKES 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  S++L+ LR DVP+   L        +                          +  NI
Sbjct: 237 AYFSKELIRLRFDVPVEKDLNAYSTSQMDYEAAARLF---------------ISEELPNI 281

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             +  +    E K    E +          +     +   K   E  PQ+L       L 
Sbjct: 282 AKLYSEKIIAEKKLSKHEKDETSSKENLKQETGLFENSEQKTLPEMLPQELGTGEEISLP 341

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q   N   Y  +   +++ + V +    G A++   T + D  +++    +++  +  + 
Sbjct: 342 Q---NKGDYKLVDEAEELFKIVDEALKQGLAAYDCETTSEDPLNAEVCGFSLALKEG-EA 397

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV---- 475
             F ++    +L      +   K    K+    + K F +     I HN K+D       
Sbjct: 398 YYFPLKAPCPELG-----EEAPKLIAFKDAQRAVTKLF-DSKMTLIMHNGKFDIQAALSS 451

Query: 476 -LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
            L   GIS     D M+ +++LD  RSS+ +  +A+  L           K+      I 
Sbjct: 452 KLAS-GIS-ANLFDTMIAAWLLDPARSSYGMDKLAESILGVKTIRFKDLVKTGQNFSDIP 509

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            ++   +A E++++  + +    P L    L  ++  L+ P+  ++++MEI GI +  + 
Sbjct: 510 LNEACPYAAEDADITFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEE 569

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   S E+ K L   E++IY L G +FN++SPKQL ++LF + K   G KTKTG   +T 
Sbjct: 570 LTAYSKELGKELEDCEKDIYRLVGHEFNIASPKQLQEVLFEERKLTPGKKTKTGY--STD 627

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             + +    ++P+   IL++R L+K+KSTY D+LP   + +  R+HT +    T TGRL+
Sbjct: 628 TSVLENLASEDPVPAKILDYRALAKLKSTYTDTLPKMTD-KNGRIHTSFIQTGTATGRLS 686

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+ + G+KIR AF +   + LISADYSQIEL ILAH++K   L + F   
Sbjct: 687 SRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNKG 746

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +D+H   A+ IF V+I+ VS  MRR AKTINF ++YG+S FRLA+ LRIPR  A ++IK 
Sbjct: 747 IDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAFRLASSLRIPRKRADEFIKA 806

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  + G+  ++ +      Q GYVET+ GRR +   INS     +   ER A+N PIQG
Sbjct: 807 YFATYSGVSGFMAQVCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAGAERIAVNTPIQG 866

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ V K+L+  KL   +LLQ+HDEL+ E  E E      ++   ME     
Sbjct: 867 TAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAAESEREKVMSLVKEKMEGV--- 923

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            I L VPL+V+I+   +W E +
Sbjct: 924 -IKLSVPLRVSIESGMSWGEFH 944


>gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
          Length = 880

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/985 (32%), Positives = 503/985 (51%), Gaps = 116/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  KK        
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLESIDEVSGKK-------- 227

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                              L   L+  +   L+++   T   DA
Sbjct: 228 -----------------------------------LKEKLEEFKDQALMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++  E +G   E  I      K   F++L ++  + ++E           Q
Sbjct: 253 ----PIEVSVSALEYQGFNREQVI---AIFKDLGFNTLLERLGEDSAEAE---------Q 296

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S   IN  + T + +   +            ++F +     +      +  +I     
Sbjct: 297 DQSLEDINVKTVTDVTSDILV----------SPSAFVVEQIGDNYHEEPILGFSIVNETG 346

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     I  D +V +                  K++ EN+   K   + K   + L
Sbjct: 347 -------AYFIPKDTAVES---------------EVFKEWVENDDQKKWVFDSKRAVVAL 384

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPID 531
              GI ++G   D +L +Y+++ G S  D+AS+A+ +  +          K  K ++P  
Sbjct: 385 RWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAVP-- 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             S+  + EH    +  I  L   L  +L     L ++E L+ P+  ++ +ME TG+++D
Sbjct: 443 --SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D LK++  E+   L   EE I++++GE FN++SPKQLG ILF K+  P   KTKTG   
Sbjct: 501 VDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTGY-- 558

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I+  IL++RQ+ K++STY + L       + +VHT ++ A T TG
Sbjct: 559 STSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI+K   L + 
Sbjct: 619 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEA 678

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N +DIH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R EA  
Sbjct: 679 FTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGA 738

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RY   F G+  Y+E +    +Q GYV T+  RR +  E+ S   +IR+  ER A+N 
Sbjct: 739 FIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNT 798

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+FE P+EEI    +++   ME 
Sbjct: 799 PIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEH 858

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPLKV+     +W + 
Sbjct: 859 A----LALDVPLKVDFASGPSWYDA 879


>gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus]
          Length = 878

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/985 (33%), Positives = 513/985 (52%), Gaps = 118/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L  + G S  YRAF+A PLL     G+  NA+ GF  ML K+L+  +     +H
Sbjct: 1   MRVKKKLVFIYGKSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLMKILEEEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + +YK  R + P  L  Q PL+R   QA+ I + E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHKTFTEYKGGRQQTPPELSEQFPLLRELLQAYQICSYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AEKEGF V IIS D+DL QL S    +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLSAKAEKEGFEVKIISGDRDLTQLASDHVTVDITKKGITDVESYTPETVREKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ L+ L GD  DNIPG+PGIG KTA  LL+++G++ENIL +  +I            
Sbjct: 176 EQIIDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGSVENILASIEQI------------ 223

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                          NG +L   L+      L+++   T   DA
Sbjct: 224 -------------------------------NGNKLKENLEKYRDLALMSKQLATISRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ L +   E  G  ++  I      K   F+SL D+ +       PQ    E + 
Sbjct: 253 ----PIELSLEDIEYHGQDVDKVI---ALFKELGFNSLLDKVA-------PQTKKEEAVL 298

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
               Y I  +    ++  +               +  +     +   +  +  A++  + 
Sbjct: 299 PNIDYTIVEEVSESVLADRS--------------ALVVEVLESNYHKAPILGFALAN-EH 343

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     +   L                        + E+E   K   + K   + L
Sbjct: 344 GHFFIRTDTALSSPL---------------------FTAWLEDETKKKSVFDGKRAIVAL 382

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPID 531
              GI +RG   D+++ SY+L+  +S+ D+AS+A+  ++++    E    K  K ++P +
Sbjct: 383 KWKGIELRGIEFDLLIASYLLNPSQSTEDVASVAKTKQYMAVQSDEAVYGKGAKQTVPEE 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K     + EH +  +  I  L       L   +   ++  L+ P+  ++++ME TG+++D
Sbjct: 443 K----ALAEHLVRKAAAIRALEKEFIHDLQENEQYALFTDLELPLSSILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + LK++  E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   
Sbjct: 499 VERLKEMGEELTEQLRAVEQEIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY-- 556

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I++ IL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 557 STSADVLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHCDTHKVHTIFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+   P   + SADYSQIELR+LAHIA    L   
Sbjct: 617 RLSSTEPNLQNIPIRLEEGRKIRQAFVPSKPDWVIFSADYSQIELRVLAHIANDENLIDA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F + LDIH   A +IF V  ++V+P MRR AK +NF I+YGIS + L+  L IPR EAA+
Sbjct: 677 FRHDLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNIPRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+ +Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 737 FIRRYFEIFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L+  KL  +MLLQ+HDEL+ E P+EE+    QI+   ME 
Sbjct: 797 PIQGSAADIIKKAMIDLADRLKQEKLQARMLLQVHDELILEAPKEEVKRLQQIVPEVMEN 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    I L+VPL ++ +    W + 
Sbjct: 857 A----IQLKVPLLIDFRFGPTWDDA 877


>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
 gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
          Length = 957

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/1010 (30%), Positives = 492/1010 (48%), Gaps = 99/1010 (9%)

Query: 10  VDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           VDG S  +RA+YA         R   G+P +   GF   L  LL+  +      + A+ F
Sbjct: 2   VDGHSLAFRAYYAFAKGREGGLRTSTGIPTSVCYGFLKNLLDLLKTEKPH----YLAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++    YKANR + PE  +P L  ++    A  +P +   G+EADD++ T  
Sbjct: 58  DLGGPTFRHKADETYKANRAETPEDFIPDLENLQELLTAMDLPIVVEPGYEADDVLGTLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-------------DIEHVIKKW 172
           Y A ++GF V I+S D+DL QLV P   +                          V +K 
Sbjct: 118 YQASQQGFKVKILSGDRDLFQLVQPDDRVRILYMSNIYSAASRSGAPPGSFGPTEVQEKM 177

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+  E++V  +AL GDS DNIPG+ GIG KTA  LL EYG L+NI  +  +IK    ++ 
Sbjct: 178 GVTVEQIVDYKALCGDSSDNIPGVKGIGDKTAVKLLTEYGTLDNIYASVDQIKGA-VQKK 236

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   E A  S+ +  +  DVP+ +  +   L+     ++   L+ LEF   + ++    
Sbjct: 237 LITGKEAAYHSQFMARIVLDVPLKVGPKDFELKGFTSDKVSPVLEKLEFQSFLRQINQLQ 296

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                                     E         S  +   D T   ++E T      
Sbjct: 297 KQFGG---------------------EAIAPPAPTASPVTDDGDDTWFFSAEDTEAVQTP 335

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHSKPIA 408
              Q +            +     +++ +  LE+        ++   TD++    +  + 
Sbjct: 336 PPPQLVP---------RIVDTPAKLKELITILESCTDGNQPVAWDTETDSLSPRDAHLVG 386

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           I      ++   +      +I +         G N   +  L  L+   E++ + K+  N
Sbjct: 387 IGCCWQGEEQAIA------YIPVGHKE-----GDNLDLETALEGLRPILESDVYPKVLQN 435

Query: 469 IKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            K+D+LV    GI ++G   D ML +YVL+  RS H++  +++ +L  T K   +  K  
Sbjct: 436 AKFDRLVFQFQGIQLQGVVFDTMLANYVLNPERS-HNLTDLSRNYLQITAKSYKELVKKG 494

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEIT 586
             I  +S +QV E+   +     QL   L  +L     L  +++ ++ P+  V++ ME +
Sbjct: 495 QTIADLSITQVAEYCGLDVFTTYQLREKLEAELAAIPSLHGLFQEVELPLEAVLAVMETS 554

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G++IDQ+ L+ +S ++  +L  LE   Y+L+GE FNL SPKQL +ILF +L+       K
Sbjct: 555 GVRIDQEYLQTLSTQLEADLQRLEAGAYELAGEIFNLGSPKQLSEILFGRLELDVKKSRK 614

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +T     +   GD+PII  +LE+R L+K+KSTY D+LP  +   T R+HT ++ A
Sbjct: 615 TKLGYSTDAATLEKLQGDHPIIDVLLEYRTLAKLKSTYVDALPMLVRDDTHRIHTDFNQA 674

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S  PNLQNIPI+T+  ++IR AFI   +  L++ADYSQIELRILAH+++   
Sbjct: 675 VTATGRLSSSNPNLQNIPIRTEFSRQIRAAFIPESSWILMAADYSQIELRILAHLSQEPR 734

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + + N  D+H + A  +  +  ++++ + RR AK INF +IYG+ P R A +  +  S
Sbjct: 735 LLEAYRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMGPHRFAREAGVKYS 792

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN--- 883
           EA D+I+R++ R+P +  Y+++ +      GYVETI GRR +++  +      R      
Sbjct: 793 EAKDFIQRFYDRYPEVFAYLQRMEREAVSQGYVETILGRRRYFEFDSRGLKKYRGKALEE 852

Query: 884 ------------------ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
                              RAA NAPIQGS+AD+ + AM+ +  +L      +++L+Q+H
Sbjct: 853 LAEVDLSDIKMSSYDRGLLRAAANAPIQGSSADLIKIAMVQLQAAL--EPYKSRLLMQVH 910

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           DELV EVP +E+      I  +ME A    + L +PL   +    NW E 
Sbjct: 911 DELVLEVPVDEVDDVRSQIKTTMETA----LPLSIPLVAEVHTGANWMEA 956


>gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
 gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
          Length = 903

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/982 (33%), Positives = 504/982 (51%), Gaps = 118/982 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +++  +     +H  V 
Sbjct: 28  NKLILIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLINVIEKEK----PTHALVA 82

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ +  YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 83  FDAGKTTFRHKTFKAYKGGRQKTPSELSEQFPFIRELLDAYSIARYELPDYEADDIIGTL 142

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              AEKE F V +I+ D+DL QL S    +Y T K     EK   E + +K+ + P +++
Sbjct: 143 AREAEKEAFEVIVITGDRDLTQLASSHITVYITKKGITDMEKNTPESLQEKYQLTPAQII 202

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYG-NLENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL +YG  +E++L +AS I  KK +E ++E  E 
Sbjct: 203 DMKGLMGDSSDNIPGIPGVGEKTALKLLHQYGGTVESVLEHASEISGKKLQEKVMENKEL 262

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A                                           L+++   T + +A   
Sbjct: 263 A-------------------------------------------LLSKELATINTEA--- 276

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV + I  T   G   E  I     +K   F+SL    S  + E+   +L    +   +
Sbjct: 277 -PVEVKIADTAYSGYDTEKVIP---LLKEMNFTSLLKNISAEDPEEEKIELQGIDVTIKT 332

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                +                         SF I     +   +  I +AIS       
Sbjct: 333 DVSPEDFGKHT--------------------SFYIELQGENYHTADIIGVAIS------- 365

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            S K    +   ++  S              +    +  + +  K  ++ K   + L+R 
Sbjct: 366 -SDKGNFYYSAATIQNS--------------TAFADWISDPNQTKAVYDAKKTMVTLNRL 410

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKIS 534
           G+   G   D ML SYVLD  ++  D AS+A ++     +       K  K ++P     
Sbjct: 411 GLPCEGILFDFMLASYVLDPSQTIDDFASVASRYDYTQVEADELVFGKGAKYNVP----D 466

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +++V +H    +  I +L   +   L   + L + + L+ P+  V+++ME+ G+++D + 
Sbjct: 467 ETKVADHLARKAVAIAKLEQTVNESLEKNEQLELVDNLELPLTFVLAKMEMEGVRVDTER 526

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+++ +E++  L ++E +I++L+G  FN++SPKQLG ILF  L  P   KTKTG   +TA
Sbjct: 527 LEEMKSEMAVRLQTIESSIHELAGTTFNINSPKQLGVILFETLGLPPVKKTKTGY--STA 584

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +   G +PII  IL +RQL K++STY + L    +K+T +VHT ++   T TGRL+
Sbjct: 585 ADVLESLSGKHPIIDEILLYRQLGKLQSTYVEGLLKVTDKKTSKVHTRFNQTLTQTGRLS 644

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S++PNLQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F N
Sbjct: 645 SVDPNLQNIPIRLEEGRKIRQVFVPSHPGWKMFSADYSQVELRVLAHISQDENLVYAFRN 704

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A ++F V+  +V   MRR AK +NF I+YGIS + L+  L I R  A D+I 
Sbjct: 705 DYDIHTKTAMDVFHVSEAEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAKDFID 764

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  +P +  Y+E+     ++ GYVETI  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 765 RYFASYPDVKVYMEEIVRSAKEKGYVETILHRRRYIPEITSRNFNVRSFAERTAMNTPIQ 824

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AM+ + + LE  ++  K+LLQ+HDEL+FE PE EI   ++I+   ME A  
Sbjct: 825 GSAADIIKQAMLLMDERLESEQMEAKLLLQVHDELIFEAPEAEIAKLAEIVPDVMENA-- 882

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + L VPLKV+    ++W + 
Sbjct: 883 --VALSVPLKVDSAHGDSWYDA 902


>gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630]
 gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42]
 gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile]
          Length = 882

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/980 (33%), Positives = 525/980 (53%), Gaps = 110/980 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L ++DG+S I RAFYA P ++ K +GL  NAI GF  ML+K++   +     +H +V
Sbjct: 2   EKKLIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+  Y +YKA R  +P+ L  QL  ++     F I  +EI G+EADDII T
Sbjct: 57  AFDRKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFRINRLEIDGYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  AE+ G+ V I++ DKD +QL S  T    T K     E+ +   VI+K+ + P + 
Sbjct: 117 VSKKAEENGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPTQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PGIG KT   L++E+ ++EN++ N  ++K    ++ I E  E 
Sbjct: 177 IDLKGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLIENTDKLKGS-VKKKIEENKEI 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  S++L  +  DVPI + L+ +                 +  +L+++            
Sbjct: 236 AIQSKRLATIIRDVPIEVDLDSM------------IFGDYDKDELLDKF----------- 272

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                       TS  S L D     ++E   +K+         
Sbjct: 273 -----------------------RYFGFTSLLSRLVDLVDSDDTEHVEEKI--------- 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                     +I+  KDI++++ ++   G    K +    +      I I IS   +K  
Sbjct: 301 ----------EILKLKDIEKFIDEVNKKGQVILKTVRGQGNILEKNIIYIFISVDGEKIY 350

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                     + E+ S L   F N    K G+N+K D + L  Y
Sbjct: 351 Y-----------------------VDSNEV-SKLDSIFSNNEIKKYGYNLKDDYISLKPY 386

Query: 480 GISMRG-FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            I++   + DI +  Y++DS  S S+D ++IA K+LS     ++E+L     S   + + 
Sbjct: 387 NINLENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLE 446

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + E+  +    + +   ++   L+   +  ++  ++ P+++V+  ME  GI++D+ +
Sbjct: 447 FEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSI 506

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S E  + + +LE+ IY+LSGE FN++SPKQLG ILF KL+ P   KTKTG + T A
Sbjct: 507 LDELSVEFKEIIATLEKEIYELSGEPFNINSPKQLGVILFEKLELPIIKKTKTG-YSTNA 565

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    +PII  I E+RQ+ K+ STY + L N IN  + R+H+ ++   T TGR++
Sbjct: 566 DVLEKLR-DKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQTITTTGRIS 624

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPIK ++G+KIR+ FI+    KL+ ADYSQ+ELR+LAH+++   + + F++ 
Sbjct: 625 STEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHH 684

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+++F V +E V+ ++R  AK +NF IIYG S F LA  L IP  +A +YI+ 
Sbjct: 685 EDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIES 744

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF ++  I E+++ T     ++GY  TI  RR +  EI S     RN  +R A+NAPIQG
Sbjct: 745 YFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQG 804

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI+VHK LE++ L +K++LQ+HDEL+ E  ++EI    +I+   ME A   
Sbjct: 805 SAADIIKIAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENA--- 861

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            +N+ V L V++ V ++W E
Sbjct: 862 -VNMDVHLDVDLNVGSSWYE 880


>gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803]
 gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803]
          Length = 891

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/982 (31%), Positives = 498/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E+  +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELANYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTTEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+A +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  Q+ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTQEILQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  N    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLANGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 399 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 454

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D D 
Sbjct: 455 LEVVAEHVARKVHVLYDVKQTFIEELEKNEQYELFTELELPLARVLADMEVKGVKVDTDR 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSCKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F+N
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQN 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048]
 gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048]
          Length = 891

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/982 (31%), Positives = 497/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +      
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKL------ 244

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + N  +            L+++   T   DA   
Sbjct: 245 --------------------------EANKEQ-----------ALMSKELATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEPSDLIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   FI   V    D+              K++  N    K   + K   + L   
Sbjct: 358 ------CYFIPADVALKSDA-------------FKEWLANGEMRKHTFDAKRAIVALKWK 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           G+ ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 399 GVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 454

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 455 LEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F +
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFRH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255]
          Length = 882

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/979 (33%), Positives = 523/979 (53%), Gaps = 110/979 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S I RAFYA P ++ K +GL  NAI GF  ML+K++   +     +H +V 
Sbjct: 3   KKLIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y +YKA R  +P+ L  QL  ++     F I  +EI G+EADDII T 
Sbjct: 58  FDRKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFRINRLEIDGYEADDIIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  AE+ G+ V I++ DKD +QL S  T    T K     E+ +   VI+K+ + P + +
Sbjct: 118 SKKAEENGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPTQFI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD  DNIPG+PGIG KT   L++E+ ++EN++ N  ++K    ++ I E  E A
Sbjct: 178 DLKGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLMENTDKLKGS-VKKKIEENKEIA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             S++L  +  DVPI + L+ +                 +  +L+++             
Sbjct: 237 IQSKRLATIIRDVPIEVDLDSM------------IFGDYDKDELLDKF------------ 272

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                      TS  S L D     ++E   +K+          
Sbjct: 273 ----------------------RYFGFTSLLSRLVDLVDSDDTEHVEEKI---------- 300

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                    +I+  KD ++++ ++   G    K +    +      I I IS   +K   
Sbjct: 301 ---------EILKLKDTEKFIDEVNKKGQVILKTVRGQGNILEKNIIYIFISVDGEKIYY 351

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                                    + E+ S L   F N    K G+N+K D + L  Y 
Sbjct: 352 -----------------------VDSNEV-SKLDSIFSNNEIKKYGYNLKDDYISLKPYN 387

Query: 481 ISMRG-FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
           I++   + DI +  Y++DS  S S+D ++IA K+LS     ++E+L     S   + +  
Sbjct: 388 INLENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEF 447

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + E+  +    + +   ++   L+   +  ++  ++ P+++V+  ME  GI++D+ +L
Sbjct: 448 EDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSIL 507

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++S E  + + +LE+ IY+LSGE FN++SPKQLG ILF KL+ P   KTKTG + T A 
Sbjct: 508 DELSVEFKEIIATLEKEIYELSGEPFNINSPKQLGVILFEKLELPIIKKTKTG-YSTNAD 566

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    +PII  I E+RQ+ K+ STY + L N IN  + R+H+ ++   T TGR++S
Sbjct: 567 VLEKLR-DKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQTITTTGRISS 625

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIPIK ++G+KIR+ FI+    KL+ ADYSQ+ELR+LAH+++   + + F++  
Sbjct: 626 TEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHHE 685

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+++F V +E V+ ++R  AK +NF IIYG S F LA  L IP  +A +YI+ Y
Sbjct: 686 DIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIESY 745

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F ++  I E+++ T     ++GY  TI  RR +  EI S     RN  +R A+NAPIQGS
Sbjct: 746 FAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQGS 805

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI+VHK LE++ L +K++LQ+HDEL+ E  ++EI    +I+   ME A    
Sbjct: 806 AADIIKIAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENA---- 861

Query: 956 INLRVPLKVNIKVSNNWQE 974
           +N+ V L V++ V ++W E
Sbjct: 862 VNMDVHLDVDLNVGSSWYE 880


>gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4]
 gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4]
          Length = 884

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 496/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 9   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 64  AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 123

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS TT +    K     ++   E + +K+ + P+++
Sbjct: 124 LAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 183

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +       E 
Sbjct: 184 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDKVSGKKLK-------EN 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             ++++                                       +++   T   DA   
Sbjct: 237 LEMNKE------------------------------------QAFMSKELATIITDA--- 257

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 258 -PITVHVDDIEYKGYEASDVIPM---FENLGFTSLLNKLGATPEETAPAELD-------- 305

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I+ D   ++      Q           ++  +     +   +      I   +    
Sbjct: 306 --DISFDIAEEVTEEMLQQD----------SAIIVEVQEDNYHKADIQGFGIQNENG--- 350

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  KK+  ++   K   + K   + L   
Sbjct: 351 ----CYFIPSDVALKS---------------EAFKKWLADDEMRKYTFDAKRAIVALKWK 391

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G   D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P   I 
Sbjct: 392 GIEIQGIYFDLLIAAYLLDPADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPAQDI- 450

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V+++ME+ G+ +D + 
Sbjct: 451 ---VAEHVARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTER 507

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY+L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 508 LRSMGDELAGRLKEMEQEIYELAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 565

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II  IL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 566 ADVLDKLMEHHEIIPKILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 625

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AFI       + +ADYSQIELR+LAHIAK   L + F++
Sbjct: 626 STDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQH 685

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  A ++I+
Sbjct: 686 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFIE 745

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF  FPG+ EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 746 KYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 805

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE+  L  ++LLQ+HDEL+FEVP+EE+    +++   ME A  
Sbjct: 806 GSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA-- 863

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 864 --IELAVPLKVDYSSGPTWYDA 883


>gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621]
 gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621]
          Length = 891

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/982 (31%), Positives = 498/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +      
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKL------ 244

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + N  +            L+++   T   DA   
Sbjct: 245 --------------------------EANKEQ-----------ALMSKELATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEPSDLIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   FI   V    D+              K++  N    K   + K   + L   
Sbjct: 358 ------CYFIPADVALKSDA-------------FKEWLANGEMRKHTFDAKRAIVALKWK 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           G+ ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 399 GVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 454

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 455 LEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
 gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
          Length = 864

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/975 (33%), Positives = 500/975 (51%), Gaps = 119/975 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + L+DG+S I+RAF+A P L     G+  NA+ GF NML ++L+  R +    + AV 
Sbjct: 2   KKIMLIDGNSLIHRAFHALPPLMTSK-GVHTNAVYGFMNMLMRILKEQRPD----YIAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  + TFR++ + +YKANR + PE L+ Q  +++   +A  I  IEI G+EADDI+ + 
Sbjct: 57  FDKKSPTFRHQEFIEYKANRVRTPEELVGQFDVLKQILKAMNIRYIEIDGYEADDILGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  AE+ G    I++ DKD +QLVSP   +  T K     E  D + + +++GIPP+ + 
Sbjct: 117 SKKAEEAGIFTLIVTGDKDTLQLVSPMVHVMLTRKGISEMEIYDPDKMAERFGIPPQAIP 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GDS DNIPGIPG+G KTA  LLQEYG+LEN                ILE AE  
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLQEYGSLEN----------------ILENAEKL 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +                             +L   +        +++   T   D     
Sbjct: 221 K----------------------------GKLRENILKYGEQARVSKRLATIVRD----- 247

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V LD++  E      +         +   ++ ++        E+ P+KL          
Sbjct: 248 -VELDVDLEEIALTEPDYAELLKIFRELEFYTLINKLPRPQEKEEHPEKLS--------- 297

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     +++     + ++++   G  + ++ TD  +   +  I I  S    +   
Sbjct: 298 --------CTVIDYSGFGRMMERVRAAGVLAVELKTDGRNPMDAHLIGIGFSPSRGEGFY 349

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                                      E+ S LK    +    KI H+ KY + VL + G
Sbjct: 350 VPAEVLEKSP-----------------EVKSDLKAVLADPGITKIIHDGKYARTVLAKIG 392

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +      D ML +Y+LD  +  +D+ S+    L     E+  +                E
Sbjct: 393 MDFVYNFDTMLAAYLLDPSKPRYDLESVVFDNLGV---ELKGT----------------E 433

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                   ++ L  ++  KL    +  ++  ++ P+  V+S ME+TGI++D + L+ +S 
Sbjct: 434 DPGRRVAYLIPLKEIMSEKLKSCAMEELFFGVEMPLSFVLSDMEMTGIKVDPEKLESLSR 493

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + L  L   IY L+G +FN++SPKQLG++LF KL  P   K K+G + T A+ LE++
Sbjct: 494 EFGEKLEELTGEIYRLAGVEFNINSPKQLGEVLFEKLNLPVIKKKKSG-YSTDAEVLEKL 552

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +P+++ ILE+R L K+KSTYAD L   ++K T R+H+ ++   T TGR++S EPNL
Sbjct: 553 KNA-HPVVEKILEYRFLMKMKSTYADGLLALVDKSTYRIHSNFNQTITATGRISSTEPNL 611

Query: 721 QNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP+KTD+G+KIR  F++  P   L+S DYSQIELR+LAH++    L + F    DIH 
Sbjct: 612 QNIPVKTDIGRKIRGVFVAESPEHVLLSGDYSQIELRVLAHLSGDEGLIEAFIKGEDIHT 671

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+FGV  E+V+P +R  AK +NF IIYGIS + LA  L I  +EA +YI+ Y +R+
Sbjct: 672 RTASEVFGVPPEQVTPLLRDRAKAVNFGIIYGISDYGLAQNLGISTAEAREYIENYLNRY 731

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + +YI +T    R +GYV TI  RR +  EINS   ++R+  ER A+N PIQGSAADI
Sbjct: 732 PKVRDYIRETIRNARMSGYVTTILNRRRYIPEINSRNYNLRSFAERVAMNTPIQGSAADI 791

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ +     ++ L  KML+Q+HDEL+F+VP+ E+     I+   ME A    I L+
Sbjct: 792 IKVAMVKITNHFREYGLKAKMLIQVHDELIFDVPKSELEVVKNIVKDDMENA----IPLK 847

Query: 960 VPLKVNIKVSNNWQE 974
           VPL V+ K    W+E
Sbjct: 848 VPLVVDFKEGYTWEE 862


>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/985 (33%), Positives = 505/985 (51%), Gaps = 118/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRSKKKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVEEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++       DA
Sbjct: 226 ---------------------------------EKLKENLRQYRDLALLSKQLAAIRRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  I      K   F S  ++     +E     + +E + 
Sbjct: 253 ----PVELSLDDIIYEGQDREKVI---ALFKELGFQSFLEKMDAPTAEDETPLMEMEFVA 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         I +     +          A+  +     +   +  + IA+   + 
Sbjct: 306 ADG-----------ITDEMLADK----------AALVVEVMEENYHDAPIVGIAL-VNEH 343

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     +                            +  +E   K   + K   + L
Sbjct: 344 GRFFLRAEMALADP---------------------QFVAWLADETKKKSMFDAKRASVAL 382

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPID 531
              GI +RG   D++L +Y+L+  + + D+A++A+  ++ +    E    K  K S+P  
Sbjct: 383 KWKGIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP-- 440

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              +  + EH +  +  I  L      +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 441 --DEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   
Sbjct: 499 TKRLEQMGSELAEQLGAIEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTGY-- 556

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 557 STSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHAKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + LRVPLKV+      W + 
Sbjct: 857 A----VELRVPLKVDYHYGPTWYDA 877


>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579]
          Length = 891

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  K+ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFCTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
 gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
          Length = 877

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 497/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS TT +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +       E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDKVSGKKLK-------EN 229

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             ++++                                       +++   T   DA   
Sbjct: 230 LEMNKE------------------------------------QAFMSKELATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDIEYKGYEASDVIPM---FENLGFTSLLNKLGATPEETAPAELD-------- 298

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I+ D   ++      Q           ++  +     +   +      I   +    
Sbjct: 299 --DISFDIAEEVTEEMLQQD----------SAIIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  KK+  ++   K   + K   + L   
Sbjct: 344 ----CYFIPSDVALKS---------------EAFKKWLADDEMRKYTFDAKRAIVALKWK 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P   I 
Sbjct: 385 GIEIQGIDFDLLIAAYLLDPADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPAQDI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V+++ME+ G+ +D + 
Sbjct: 444 ---VAEHVARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY+L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRSMGDELAGRLKEMEQEIYELAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II  IL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMEHHEIIPKILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AFI       + +ADYSQIELR+LAHIAK   L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  A ++I+
Sbjct: 679 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF  FPG+ EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE+  L  ++LLQ+HDEL+FEVP+EE+    +++   ME A  
Sbjct: 799 GSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSSGPTWYDA 876


>gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17]
 gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17]
          Length = 877

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 496/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS TT +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +       E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDKVSGKKLK-------EN 229

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             ++++                                       +++   T   DA   
Sbjct: 230 LEMNKE------------------------------------QAFMSKELATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDIEYKGYEASDVIPM---FENLGFTSLLNKLGATPEETAPAELD-------- 298

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I+ D   ++      Q           ++  +     +   +      I   +    
Sbjct: 299 --DISFDIAEEVTEEMLQQD----------SAIIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  KK+  ++   K   + K   + L   
Sbjct: 344 ----CYFIPSDVALKS---------------EAFKKWLADDEMRKYTFDAKRAIVALKWK 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G   D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P   I 
Sbjct: 385 GIEIQGIYFDLLIAAYLLDPADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPAQDI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V+++ME+ G+ +D + 
Sbjct: 444 ---VAEHVARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY+L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRSMGDELAGRLKEMEQEIYELAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II  IL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMEHHEIIPKILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AFI       + +ADYSQIELR+LAHIAK   L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  A ++I+
Sbjct: 679 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF  FPG+ EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE+  L  ++LLQ+HDEL+FEVP+EE+    +++   ME A  
Sbjct: 799 GSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSSGPTWYDA 876


>gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
 gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
          Length = 891

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/982 (31%), Positives = 499/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +      
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKL------ 244

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + N  +            L+++   T   DA   
Sbjct: 245 --------------------------EANKEQ-----------ALMSKELATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYETSDLIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVAEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   FI   V    D+              K++  N    K   + K   + L   
Sbjct: 358 ------CYFIPADVALKSDA-------------FKEWLANGEMRKHTFDAKRAIVALKWK 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           G+ ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 399 GVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----G 454

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D D 
Sbjct: 455 LEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDR 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIAK   L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAKDPGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15]
 gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15]
          Length = 891

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  K+ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
 gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
          Length = 891

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  K+ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 891

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/982 (30%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVRVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  ++ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W]
 gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W]
          Length = 891

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/982 (30%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  ++ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676]
 gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676]
          Length = 891

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185]
 gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 891

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/982 (30%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  ++ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/984 (33%), Positives = 507/984 (51%), Gaps = 118/984 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVEEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++       DA
Sbjct: 226 ---------------------------------EKLKENLRQYRDLALLSKQLAAIRRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  I      K   F S  ++     +E     + +E + 
Sbjct: 253 ----PVELSLDDIIYEGQDREKVI---ALFKELGFQSFLEKMDAPTAEDETPLMEMEFVA 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         I +     +          A+  +     +   +  + IA+   + 
Sbjct: 306 ADG-----------ITDEMLADK----------AALVVEVMEENYHDAPIVGIAL-VNEH 343

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              +      +                            +  +E   K   + K   + L
Sbjct: 344 GRFSLRAEMALADP---------------------QFVAWLADETKKKSMFDAKRASVAL 382

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPID 531
              GI +RG   D++L +Y+L+  + + D+A++A+  ++ +    E    K  K S+P  
Sbjct: 383 KWKGIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP-- 440

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              +  + EH +  +  I  L      +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 441 --DEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   
Sbjct: 499 TKRLEQMGSELAEQLGAIEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTGY-- 556

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 557 STSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR ++ +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + LRVPLKV+      W +
Sbjct: 857 A----VELRVPLKVDYHYGPTWYD 876


>gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 891

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 498/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 454

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D D 
Sbjct: 455 LEVVAEHVARKVHVLYDIKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDR 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIQKLEQLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/985 (33%), Positives = 522/985 (52%), Gaps = 55/985 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           K++ +F++D    IYR+++A          G  ++A+ GF   L+ +L++   +     F
Sbjct: 2   KDDVVFILDAYGLIYRSYFAFVGKPLTNSTGKNISAVFGFFKSLYTILRDYEPQF----F 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV  D    TFR+E+Y +YKA R K PE L  Q+P++     A GI  +   GFEADD+I
Sbjct: 58  AVAMDSRVPTFRHEMYCEYKATRDKTPEDLHAQIPIIEEILTALGITLMRKDGFEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPPEK 178
           A+    A  +     IIS+DKDLMQL+     +    K +     + + V ++WG+PP +
Sbjct: 118 ASIAKCASADNKKAVIISSDKDLMQLIDDKITMLKPNKADAWIAFNADDVKEQWGVPPNQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+   +L GD+ DN+PG+  IG KTAA LL EYG+L+ I  +   +K    ++ I+E  E
Sbjct: 178 MLDFLSLIGDTADNVPGVKSIGPKTAAKLLDEYGSLDGIYAHTDSLKGA-MQKKIIEGKE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A  S+KL+ L         L        +           E   L  + A   D    +
Sbjct: 237 NAYFSKKLIALEDSALEKCVLSDFACPVLDYAAAAKIFLREELPSLARQYAPNADFVKTD 296

Query: 299 IEPVVLDIN-TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              +V   +   E K  A     +  TT    + +S S    K                 
Sbjct: 297 EAFLVRSADSKKEKKQGANSAGANPITTSPLQEIASASGGFKK----------------- 339

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 N  +Y  I   +++++ +      G A+F   T  ++   ++    +++   ++
Sbjct: 340 ------NAGNYRGITEPEELRKLIDAAIAQGFAAFDCETTGLNPLEAELAGFSLALKAEE 393

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    I + L     Q    +    ++ +S L + ++ ++   I HN K+D   + 
Sbjct: 394 ------AFYIPVKLPPPELQSQAPQPMPLEKAVSELARLWQQKNLTIIMHNGKFDYQAMR 447

Query: 478 RYGI---SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPID 531
             G+   +     D M+ +++LD  R+S  + S+A   L   +   K+++   K      
Sbjct: 448 TAGVFEKTPCAIFDTMIAAWLLDPDRTSFSLDSLASSLLKLQTIAYKDVVPKGKI---FS 504

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +   Q   +A E++++ LQ +  L PKL    L  +++ L+ P++ ++++MEI GI + 
Sbjct: 505 DVPYEQAVAYAAEDADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFLK 564

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           ++ L + S E+ K ++  E  I+D+ G +FN++SPKQL ++LFT+LK P+G KTKTG   
Sbjct: 565 KEELAEFSEELGKEIIVHEREIFDIVGHEFNIASPKQLQEVLFTELKLPTGKKTKTGY-- 622

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T   + ++   ++ I   ILE+R L+K+KSTY D+LP   + +  RVHT +    T TG
Sbjct: 623 STDTSVLEVLASEHVIPAKILEYRALTKLKSTYTDALPALAD-KNGRVHTSFIQTGTATG 681

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIPI+ + G++IR+AF +   K LISADY+QIEL ILAH+++   L Q F
Sbjct: 682 RLSSRDPNLQNIPIRDEAGRRIRKAFQAEKGKNLISADYAQIELVILAHLSQDKNLVQAF 741

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +   D+H   AA IFG+ I +V P MRR AKTINF ++YG+S FRL+  LRIPR +AAD+
Sbjct: 742 QEGTDVHAATAALIFGMPIGEVLPDMRRIAKTINFGVMYGMSAFRLSNALRIPRRQAADF 801

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF  + G+H ++E+ K   R+ GYVET+ GRR +   INS     +   ER AIN P
Sbjct: 802 IETYFKTYSGVHIFMEELKESARRKGYVETLMGRRRYIYAINSANKLEQAGAERVAINTP 861

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM+ V  +L+ HKL  K+LLQ+HDEL+ E PE+E  T   ++   ME  
Sbjct: 862 IQGSAADIVKTAMLKVQNALQAHKLQAKLLLQVHDELICEAPEKETETVKTLLRQEMESV 921

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VPL+VNI+    W + +
Sbjct: 922 ----VKLLVPLRVNIESGKTWGDFH 942


>gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134]
 gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134]
          Length = 877

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/982 (30%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEK------- 229

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 230 ------------------------------------LEENKEQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  ++ 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171]
 gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171]
          Length = 877

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEK------- 229

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 230 ------------------------------------LEENKEQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  K+ 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 891

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+A +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      +      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEASDVVPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFEIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K +  +    K   + K   + L   
Sbjct: 358 ----CYFIQKDIALKS---------------DAFKDWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  K+ 
Sbjct: 399 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
 gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
          Length = 879

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/988 (32%), Positives = 508/988 (51%), Gaps = 123/988 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS +  G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E+  +EADDI
Sbjct: 56  MLVAFDAGKTTFRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYKISRYELPEYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEKEGF V ++S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAVSAEKEGFEVKVVSGDKDLTQLATGKTTVAITRKGITDVEDYTPEHVQEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  KK +E     
Sbjct: 176 LQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHSVEKLLDSIDEVSGKKLKEK---- 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                                  L+  +   L+++   T   +A
Sbjct: 232 ---------------------------------------LEEYKEQALMSKELATIMTNA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ +     + KG   E  +     +  +       + S   +E+  + + +E  +
Sbjct: 253 ----PIEVKPEDLDYKGFDREQVVAIFKDLGFNTLLERLGEESGETAEENFEDINVETAE 308

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           ++++  + + S                       +  +     +      +  +I     
Sbjct: 309 EITEDMLVSPS-----------------------ALVVEQIGDNYHEEPILGFSI----- 340

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDK 473
                                + TG   + KEI       K + E+E   K   + K   
Sbjct: 341 --------------------VNETGLYYIPKEIAIQSETFKSWAEDESMKKWVFDSKRSV 380

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE---ILKSRKSSI 528
           + L   GI ++G   D +L +Y+++ G S  D+AS+A+++ L+   K+     K  K ++
Sbjct: 381 VALRWQGIELKGTEFDALLAAYIINPGNSYDDVASVAKEYGLNIVSKDEAVYGKGAKRAV 440

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P +K    ++ +H    ++ +  L   L   L     L +YE L+ P+  ++ +ME  G+
Sbjct: 441 PAEK----ELADHLARKASAVNSLRDKLLHALEENNQLELYEDLELPLALILGEMESMGV 496

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D + LK++  E+   L   EE I+D++GE FN++SPKQLG ILF KL  P   KTKTG
Sbjct: 497 KVDVERLKRMGEELKAKLKEYEEKIHDIAGEPFNINSPKQLGVILFEKLGLPPVKKTKTG 556

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+ +     + I+ +IL++RQ+ K++STY + L     K + +VHT ++ A T
Sbjct: 557 Y--STSADVLEKLADKHDIVAHILQYRQIGKLQSTYIEGLLKVTRKDSHKVHTRFNQALT 614

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S +PNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHI+K   L
Sbjct: 615 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENL 674

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F N +DIH   A ++F V+ ++V+  MRR AK +NF I+YGIS + L+  L I R E
Sbjct: 675 IEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKE 734

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +I RY   FPG+  Y+E++    +Q GYV T+  RR +  E+ S   ++R+  ER A
Sbjct: 735 AGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTA 794

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N PIQGSAADI ++AMI +   L++  L  ++LLQ+HDEL+FE P+EEI    +++   
Sbjct: 795 MNTPIQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEILEKLVPEV 854

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ME A    + L VPLK +     +W + 
Sbjct: 855 MEHA----LALDVPLKADYASGPSWYDA 878


>gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 891

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 499/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+  +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  K+ 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LCNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/980 (32%), Positives = 513/980 (52%), Gaps = 103/980 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG++  YRA+YA         G+P NA  G   ML + +++        + AV F
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSAGIPTNATYGVARMLVRFIKDHIIVGK-DYTAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++   YKA RPK P++L+ QLP ++   +A G+  +EI+G+EADDIIAT  
Sbjct: 62  DKRAATFRHKLLETYKAQRPKTPDLLIQQLPYIKRLVEALGMKVLEIEGYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                    + I++ DKD++QLV+    ++  VK     E  D + V +K+G+ P ++  
Sbjct: 122 VKGLSLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPHQIPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L ALTGD IDNIPG+ GIG KTA  LL++Y +L                E+IL +     
Sbjct: 182 LLALTGDEIDNIPGVTGIGEKTAVQLLEKYKDL----------------EDILNH----- 220

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                         +    + L    L +R +       A +E 
Sbjct: 221 ------------------------------VRELPQKLRKALLRDRESAVLSKKLAILET 250

Query: 302 -VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V ++IN  E +    + E       +    S + +      SE                
Sbjct: 251 NVPIEINWEELRYQGHDREKLLSLLKELEFASIMKELQLYEESEPV-------------- 296

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + +  + ++ V+KL+   S +  + T ++D F      I++S   ++   
Sbjct: 297 ------GYRIVKDPVEFEKLVEKLKETPSFAIDLETSSLDPFDCDIAGISVSFKPKE--- 347

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I L    +Q     N   KE+L  LK+  E+     +G N+K+D  VL   G
Sbjct: 348 -----AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKG 397

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-----IDKIS 534
           +  +    D M+ +Y+++      ++  +A K+L Y      +    S P        + 
Sbjct: 398 VEPVPPHFDTMIAAYLIEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFVDVP 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   ++ E++++  +L+  L  KL    L +V+ +++ P++ V+++ME+ G+ +D + 
Sbjct: 458 LEKAANYSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEF 517

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           LK++S E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG + T 
Sbjct: 518 LKKLSEEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTR 577

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++  G++ II  ILE+R++ K+KSTY D+LP  +N +T R+H  ++   T TGRL
Sbjct: 578 IEVLEEL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRL 636

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE
Sbjct: 637 SSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFE 696

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +D+H + A+ IF V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L +P  EA   I
Sbjct: 697 EGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMI 756

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + +YI++  +  ++ GYV T+FGR+    ++ +   + +   ER AIN PI
Sbjct: 757 VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPI 816

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI + + L++ K+ +KM++Q+HDELVFEVP+EE     +++   M    
Sbjct: 817 QGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEEKDALVELVKDRMMNV- 875

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              + L VPL+V++ +   W
Sbjct: 876 ---VKLSVPLEVDVTIGKTW 892


>gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 891

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPQQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVNVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
 gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
          Length = 877

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/982 (31%), Positives = 498/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK +E +      
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKL------ 230

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + N  +            L+++   T   DA   
Sbjct: 231 --------------------------EANKEQ-----------ALMSKELATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDMEYKGYEPSDLIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   FI   V    D+              K++  N    K   + K   + L   
Sbjct: 344 ------CYFIPADVALKSDA-------------FKEWLANGEMRKHTFDAKRAIVALKWK 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           G+ ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 385 GVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----G 440

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 441 LEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFEDLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 799 GSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L]
 gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L]
          Length = 891

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTEEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVNVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 891

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 502/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVNVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++++                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALNS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
          Length = 878

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/984 (33%), Positives = 507/984 (51%), Gaps = 118/984 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVEEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++       DA
Sbjct: 226 ---------------------------------EKLKENLRQYRDLALLSKQLAAIRRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  I      K   F S  ++     +E     + +E + 
Sbjct: 253 ----PVELSLDDIIYEGQDREKVI---ALFKELGFQSFLEKMDAPTAEDETPLMEMEFVA 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         I +     +          A+  +     +   +  + IA+   + 
Sbjct: 306 ADG-----------ITDEMLADK----------AALVVEVMEENYHDAPIVGIAL-VNEH 343

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              +      +                            +  +E   K   + K   + L
Sbjct: 344 GRFSLRAEMALADP---------------------QFVAWLADETKKKSMFDAKRASVAL 382

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPID 531
              GI +RG   D++L +Y+L+  + + D+A++A+  ++ +    E    K  K S+P  
Sbjct: 383 KWKGIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP-- 440

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              +  + EH +  +  I  L      +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 441 --DEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTGY-- 556

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 557 STSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR ++ +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + LRVPLKV+      W +
Sbjct: 857 A----VELRVPLKVDYHYGPTWYD 876


>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
          Length = 878

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/984 (33%), Positives = 505/984 (51%), Gaps = 118/984 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRLKKKLVLIDGSSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVEEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++       DA
Sbjct: 226 ---------------------------------EKLKENLRQYRDLALLSKQLAAIRRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  I      K   F S  ++     +E     + +E + 
Sbjct: 253 ----PVELSLDDIIYEGQDREKVI---ALFKELGFQSFLEKMDAPTAEDETPLMEMEFVA 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         I +     +          A+  +     +   +  + IA+   + 
Sbjct: 306 ADG-----------ITDEMLADK----------AALVVEVMEENYHDAPIVGIAL-VNEH 343

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     +                            +  +E   K   + K   + L
Sbjct: 344 GRFFLRAEMALADP---------------------QFVAWLADETKKKSMFDAKRASVAL 382

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPID 531
              GI +RG   D++L +Y+L+  + + D+A++A+  ++ +    E    K  K S+P  
Sbjct: 383 KWKGIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP-- 440

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              +  + EH +  +  I  L      +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 441 --DEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTGY-- 556

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 557 STSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    +++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + LRVPLKV+      W +
Sbjct: 857 A----VELRVPLKVDYHYGPTWYD 876


>gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 891

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVNVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 891

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAREASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVNVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
 gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/984 (33%), Positives = 506/984 (51%), Gaps = 118/984 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVEEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++       DA
Sbjct: 226 ---------------------------------EKLKENLRQYRDLALLSKQLAAIRRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  I      K   F S  ++     +E     + +E + 
Sbjct: 253 ----PVELSLDDIIYEGQDREKVI---ALFKELGFQSFLEKMDAPTAEDETPLMEMEFVA 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         I +     +          A+  +     +   +  + IA+   + 
Sbjct: 306 ADG-----------ITDEMLADK----------AALVVEVMEENYHDAPIVGIAL-VNEH 343

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     +                            +  +E   K   + K   + L
Sbjct: 344 GRFFLRAEMALADP---------------------QFVAWLADETKKKSMFDAKRASVAL 382

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPID 531
              GI +RG   D++L +Y+L+  + + D+A++A+  ++ +    E    K  K S+P  
Sbjct: 383 KWKGIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP-- 440

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              +  + EH +  +  I  L      +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 441 --DEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTGY-- 556

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 557 STSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR ++ +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + LRVPLKV+      W +
Sbjct: 857 A----VELRVPLKVDYHYGPTWYD 876


>gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342]
 gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342]
          Length = 891

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 499/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTEEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEPSDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQDDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L   F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42]
 gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42]
          Length = 891

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVNVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames]
 gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bacillus anthracis str. A2012]
 gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W]
 gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684]
 gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248]
 gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066]
 gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055]
 gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B]
 gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94]
 gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames]
 gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W]
 gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684]
 gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248]
          Length = 877

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 226 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVNVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
 gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
          Length = 878

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/985 (33%), Positives = 513/985 (52%), Gaps = 118/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   +     +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEQ----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V IIS D+DL QL S    +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKIISGDRDLTQLASRHVTVDITKKGITDIEPYTPETVREKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   +K           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++   +   DA
Sbjct: 226 ---------------------------------EKLKENLRQHRDLALLSKQLASICRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  I      K   F S  ++ +       P     + L+
Sbjct: 253 ----PVELSLDDIVYEGQDREKVI---ALFKELGFQSFLEKMAA------PAAEGEKPLE 299

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           ++    ++  +   + +                A+  +     +   +  + IA+     
Sbjct: 300 EMEFAIVDVITEEMLAD---------------KAALVVEVMEENYHDAPIVGIAL----- 339

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         ++ H       +  L     S    +  +E   K   + K   + L
Sbjct: 340 --------------VNEHGRFFMRPETALAD---SQFLAWLADETKKKSMFDAKRAVVAL 382

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPID 531
              GI +RG   D++L +Y+L+  + + DIA++A+  ++ +    E    K  K S+P +
Sbjct: 383 KWKGIELRGVAFDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAVYGKGVKRSLPDE 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +     + EH +  +  I  L       L   +   +  +L++P+  ++++ME TG+ +D
Sbjct: 443 Q----TLAEHLVRKAAAIWALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   
Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY-- 556

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I++NIL +RQL K++STY + L   +   T +VHT ++ A T TG
Sbjct: 557 STSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+  LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+ +Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EEI    +++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + LRVPLKV+      W + 
Sbjct: 857 A----VTLRVPLKVDYHYGPTWYDA 877


>gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 891

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+A +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      +      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEASDVVPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K +  +    K   + K   + L   
Sbjct: 358 ----CYFIQKDIALKS---------------DAFKDWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  K+ 
Sbjct: 399 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44]
 gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44]
          Length = 884

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 497/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 9   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 64  AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 123

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 124 LAKEASEQGAYVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTTEALFEKYSLSPKQI 183

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK           
Sbjct: 184 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKK----------- 232

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 233 --------------------------------LKEKLEANKEQALMSKELATIITDA--- 257

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 258 -PITVHVDDIEYKGYEASDVIPM---FENLGFTSLLNKLGATPEETVPAELD-------- 305

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I+ D   ++ +    Q           ++  +     +   +      I   +    
Sbjct: 306 --EISFDIVEEVTDEMLQQD----------SAIIVEVQEDNYHKADIQGFGIQNENG--- 350

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                   K+  +E   K   + K   + L   
Sbjct: 351 ----CYFIPSDVALGS---------------EAFTKWLADEDMRKYTFDAKRAIVALKWK 391

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
            + ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P   + 
Sbjct: 392 DVEIKGIDFDLLIAAYLLDPADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPEQGV- 450

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V+++ME+ G+++D + 
Sbjct: 451 ---VAEHVARKVHVLFDVQKTFVEELEKNEQYELFTELEMPLARVLAEMEVKGVKVDTER 507

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY+L+G +FN++SPKQLG +LF  L  P   KTKTG   +T+
Sbjct: 508 LRNMGDELAGRLKEMEQKIYELAGTEFNINSPKQLGVVLFENLNLPVIKKTKTGY--STS 565

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 566 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 625

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AFI       + +ADYSQIELR+LAHIAK   L + F++
Sbjct: 626 STDPNLQNIPIRLEEGRKIRQAFIPSTEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQH 685

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  A ++I+
Sbjct: 686 DMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFIE 745

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF  FPG+ EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 746 KYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 805

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE+  L  ++LLQ+HDEL+FEVP+EE+    +++   ME A  
Sbjct: 806 GSAADIIKKAMIIMANRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA-- 863

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 864 --IELAVPLKVDYSSGPTWYDA 883


>gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 891

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 499/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEPSDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQDDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L   F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 891

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEK------- 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+A +   L+++   T   DA   
Sbjct: 244 ------------------------------------LEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      +      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEASDVVPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K +  +    K   + K   + L   
Sbjct: 358 ----CYFIQKDIALKS---------------DAFKDWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  K+ 
Sbjct: 399 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      ++ GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKRKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
 gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
          Length = 891

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVNVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFKH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 933

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/987 (34%), Positives = 530/987 (53%), Gaps = 74/987 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +FLVD ++F++RA++A P+L+   DG PVNA+ G+  M    +Q  RKE    H   +FD
Sbjct: 1   MFLVDANNFLFRAYHALPMLT-APDGRPVNAVHGYVRM----VQAIRKEFAPQHLLAVFD 55

Query: 67  YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                 +R E+Y +YKANRP  PE L PQ+PLVR AT A  IP +E   +EADD+IA Y 
Sbjct: 56  ASGSKGWRRELYAEYKANRPPPPEDLQPQIPLVREATDALSIPWLEDPRYEADDLIARYV 115

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
               +    V I+S+DKDLMQLV+        +  L+DT+K  ++    V+ K+G+ PEK
Sbjct: 116 QAGVEAKLEVVIVSSDKDLMQLVAGPDDVREGSVRLWDTMKNRRVGPAEVVAKFGVGPEK 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  L AL GDS DNIPG+ GIG KTA  LL+ YG+LE IL N  +IKQKKRREN+  YAE
Sbjct: 176 LGDLLALAGDSSDNIPGVKGIGPKTATSLLETYGDLEGILSNTDKIKQKKRRENLETYAE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            AR+SRKLV LRTD  +  P+E +  +      + +F   L F   +   A      +  
Sbjct: 236 DARMSRKLVALRTDYDLPRPIEDVADKGPKRATMEAFFTPLGFKATLTG-AVRAGGGSRR 294

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           + P  L     + K + ++ E         +  ++L                        
Sbjct: 295 VAPRTLVETIAKIKELEVDREAVEVLNADEAGVATL------------------------ 330

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                ++ +       +F++     D   + PI +A++    K 
Sbjct: 331 -------------------DAFLAQARAAEGLAFELELSGDDPLRADPIGLALAIPKAKA 371

Query: 419 DTSFKVE--TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +    +E   I++ ++  +  D   +     E+L+ +     +    K  H +K  ++VL
Sbjct: 372 EAPGALERAPIYLPMAHRSLSDGAVQQWKPSEVLAKVGPLLSDAKLPKYTHALKDQQVVL 431

Query: 477 HR--YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPI 530
            R    + +R    D +L SY LD  RS H++  +A+     L   R+ I+   K  +  
Sbjct: 432 SRADLNVEVRNVVGDTLLASYTLDPARSDHNLEGLAKDIGGRLVGDRESIVGKGKKRVGF 491

Query: 531 DKISDSQVQEHAIENS--NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           D+++ +     A E +     L   ++   K   E+   +Y  ++ P+  V++++E  G+
Sbjct: 492 DQVAVAVAGPWAGERAGLAATLGPHMVAAAKAAGEQTQKLYAEVELPLARVLARLERRGV 551

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D+  L++ + E+   + +L+  + + +G   + +SPKQLG +LF +   P+  KTKTG
Sbjct: 552 LLDEAELQRQNDELGGQIDALKSTLQEEAGYAVDPNSPKQLGKLLFEERGLPAKKKTKTG 611

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T AQ LE+++  D PI+K IL++R L+K+K+TY D+LP  +N  T R+HT +  A  
Sbjct: 612 -YSTDAQTLEELSLLD-PIVKVILDYRSLAKLKNTYLDTLPKLVNPNTGRLHTHFRQAVA 669

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S EPNLQNIPI+T+ G++IRR F++P   +L++ DYSQIELR+LAH++K   L 
Sbjct: 670 ATGRLSSREPNLQNIPIRTEQGRRIRRGFVAPEGMQLVTLDYSQIELRVLAHLSKDPNLV 729

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F +  D+HR  AAE+F V   +V+ + RR AK +NF +IYG S F LA QL IP+  A
Sbjct: 730 KAFTDGADVHRRTAAEVFEVPEAEVTSEQRRVAKAVNFGVIYGQSAFGLARQLGIPQGRA 789

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YIK YF + PG+  Y+    +  +  G+ ETIFGRR    E+    +  R+  ER A 
Sbjct: 790 GKYIKAYFKKIPGVSSYMNALIDTAKDTGFAETIFGRRRRIPELRRRGAVARSYGERIAR 849

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AM+ V + L+D     +MLL +HDEL+FE   +++     ++  +M
Sbjct: 850 NTPIQGSAADILKIAMVEVERLLDDKPW-ARMLLTVHDELIFECETDKVQELIGLVKPAM 908

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           EK+     +L VPL V      NW++ 
Sbjct: 909 EKSA----SLDVPLLVEGGAGANWEDA 931


>gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
            araneosa HTCC2155]
 gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
            araneosa HTCC2155]
          Length = 1036

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1045 (31%), Positives = 533/1045 (51%), Gaps = 82/1045 (7%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            M  ++ +F++D  ++I+RAFY         DGLP NA+ GF N    ++++       SH
Sbjct: 1    MSDQSSIFVIDSMAYIFRAFYGIRANMHSKDGLPTNALFGFINSFENIIRDFN----PSH 56

Query: 61   FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               +FD  + TFRNE+Y +YKANR + PE L PQ  LV+      GIP +  +GFEADDI
Sbjct: 57   VVAVFDAGSETFRNEMYSEYKANRKECPEELKPQFDLVKEYIALRGIPLLIQKGFEADDI 116

Query: 121  IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKM 179
            IAT    A        I S DKDLMQLV+  T +  T K   + D E V++  G+ P+++
Sbjct: 117  IATVAKQATGSHIKTVICSGDKDLMQLVNDDTLICHTHKNNLMIDAEKVVEIMGVRPDQI 176

Query: 180  VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
            V   ++ GDS DNIPG+PGIG K AA LL E+ NLE IL +  +IK KK+ E I E A+ 
Sbjct: 177  VDYLSICGDSADNIPGLPGIGPKGAAKLLAEFDNLETILASHDKIKGKKQSETIREKADL 236

Query: 240  ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            A LS+ LV+L+ ++ +    E L+    +   L  F + + F + +  +         N 
Sbjct: 237  ATLSKSLVILQDEMTLDKSYEELVPSQPDFDGLADFYERMGFARFLRDLPNIKASYEGNS 296

Query: 300  E-----------PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
            +           PV L + T   +    E            +F  L++  S +       
Sbjct: 297  KPTLKQSLSSGGPVTLRVETFAPRPFQHEILKLNAEFESRLEFDVLAEM-SHLGKNSEEI 355

Query: 349  KLFLERLQKLSQYPINNDSYTKIVNTKDIQQ-------WV-------------------- 381
             + L+         + ++++T I    + ++       W+                    
Sbjct: 356  FIALKNAFNKCDLTLASENHTVIPEDLESKRKCTLTWEWLAATWLHDIELGLEQIASNHL 415

Query: 382  ----QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                + L      +  + T T++    +     + ++ +      ++    + +S  T  
Sbjct: 416  PLIQEHLFLNAKFAELLATATVEYNSQRHDYNIVKSIPELKAVLDEITKAKLPVSFDTET 475

Query: 438  DST--------GKNTLTKEILSYLKKF---FENEHFLK-------------IGHNIKYDK 473
                       G     ++  ++   F    + E  LK                N K+D 
Sbjct: 476  TGLDVRSATIVGLGLAIRDHHAWYIPFNSDLDKEEILKEIKPFFADSSLKFFAQNAKFDL 535

Query: 474  LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIP 529
             +LH  GI ++  + D ++ S++ +  R  HD+ S++  +L+Y     + ++   K  I 
Sbjct: 536  QMLHYAGIEVKNIDFDTLVASFICNPSRQFHDLDSLSLHYLNYRKISTESLIGKGKKQIS 595

Query: 530  IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            +  +   +V  +  E+ ++ L+L   L  +L    L ++++ +D P+I V+S+ME  GI 
Sbjct: 596  MADLPVERVATYCCEDVDITLRLRNELEAELHRRDLRNLFDEMDIPLIPVLSKMENNGIS 655

Query: 590  IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
            I+   L+++S++ S  L   EE I+ L+G +FN++SPKQ+G +LF ++   +G KT TG 
Sbjct: 656  INLGTLEKISSDFSAELKKCEEQIHALAGHEFNINSPKQVGVVLFEEMGLKAGKKTATGY 715

Query: 650  WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
              +T+ ++ +    ++ I++ IL  R LSK+ STYAD+LP  +++  QR+HT +S  +  
Sbjct: 716  --STSAEVLENLAAESEIVRAILRHRTLSKLISTYADALPKEVSELDQRIHTRFSQTTAA 773

Query: 710  TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
            TGRLAS +PNLQNIP +T  G+ IR AF +P     IS DYSQIELRI+A +++   L +
Sbjct: 774  TGRLASTQPNLQNIPTRTAEGKSIRSAFQAPEGHHFISCDYSQIELRIMAELSQDPGLLE 833

Query: 770  VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
             F N  D+H   A+ +F   + +V+ Q R  AK +NF I++G  P+ LA ++ +   EA 
Sbjct: 834  AFNNDFDVHTHTASLVFETELSEVTKQQRYAAKAVNFGIMFGQGPYGLAKEIGVSADEAK 893

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             +I  YF R+P + +++ K     R  GY ET FGRR +  E+ S    IR+  ER ++N
Sbjct: 894  QFISNYFKRYPDVQKFMAKCVEDARDKGYSETSFGRRRYLPEMLSSNGRIRSGAERISVN 953

Query: 890  APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            +PIQG+AADI + AMI V   LE  +L +KMLLQIHDEL+FEVP++E+    ++I   M 
Sbjct: 954  SPIQGTAADIIKIAMIKVADELEKRQLKSKMLLQIHDELLFEVPDDELEIMKELIPQIMT 1013

Query: 950  KACLPKINLRVPLKVNIKVSNNWQE 974
                    ++VPLKV+   + +W +
Sbjct: 1014 DIP----QIKVPLKVDCAAAKSWDQ 1034


>gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842]
 gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842]
          Length = 877

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E        
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEK------- 229

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               L+A +   L+++   T   DA   
Sbjct: 230 ------------------------------------LEANKDQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      +      ++  F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDMEYKGYEASDVVPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K +  +    K   + K   + L   
Sbjct: 344 ----CYFIQKDIALKS---------------DAFKDWLADGEMRKHTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  K+ 
Sbjct: 385 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
 gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
          Length = 877

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 226 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVNVDDMEYKGYEANDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1013 (31%), Positives = 507/1013 (50%), Gaps = 97/1013 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L+DG S  +RA+YA         R   G+P +   GF N L + ++    +    + A
Sbjct: 10  LMLIDGHSLAFRAYYAFAKARKGPLRTSTGIPTSVCFGFLNSLIQAIKLENPQ----YIA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E   +YKA+R + PE  +P +  ++   +A  I  I   G+EADD++ 
Sbjct: 66  IAFDSKEPTFRHEADVNYKADRKETPEDFIPDILNLQRLLEALNITIITAPGYEADDVLG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT------------TCLYDTVKEEKIDIEHVIK 170
           T      +EG+ V I+S D+DL QLV+                        + ++E V +
Sbjct: 126 TVATKGSQEGYRVKIVSGDRDLFQLVNDDNHLSVLYLERNAVKSSSGEGYTEFNVEAVTE 185

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K GI P +++  +AL GD  DNIPG+ GIG KTA  LL EYG LE +  N   IK    +
Sbjct: 186 KMGIKPTQVIDYKALCGDKSDNIPGVRGIGEKTAVKLLSEYGTLEAVYNNIEEIKGA-NQ 244

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + + E  + A  S+ L  + TD P+   +E   L+  N   +   L+ LE  K I  +  
Sbjct: 245 KKLKEGKKEAEHSQYLAEIVTDAPLEFQIERCELKGFNFDAVKPILEELELKKFIKEINQ 304

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
             +    NI              + +  +I+++ T + S F  + ++   +N+       
Sbjct: 305 LQEHFGGNI-------------TLEVHEKINKNETHQLSIFDDVPEKVEPVNN------- 344

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHSKP 406
                    +   +  +   I   + + + V KL T  +     ++   T  ++   +  
Sbjct: 345 ------IKEETKESLINPQIITEIEQLHELVDKLSTFTNANIPVAWDTETTDLNPRQANL 398

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + I     +   D +      +I +         GK    +++L  L+   E+  + K+ 
Sbjct: 399 VGIGCCWGNNPTDIA------YIPIGHKQ-----GKQLKKEQVLDSLRTILESSDYPKVF 447

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS----YTRKEIL 521
            N K+D+L+     I++ G   D ML SYVL   +S H ++ + +++L         E+ 
Sbjct: 448 QNTKFDRLIFKHQAINLDGVVFDTMLASYVLHPEKS-HKLSELCEQYLEGITCQNYDELG 506

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVV 580
            S+K    I  +   +V E+   ++     L   L+ +L     L  +   +++P+  V+
Sbjct: 507 ISKKQ--TIADLDIEKVAEYCGMDAYGTFLLVEPLKNELQQVPTLEQLLLEVEQPLEAVL 564

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           S ME TGI ID + L ++S E+ + L SLE+  YD + EKFNL SPKQLG+ILF KL+  
Sbjct: 565 SIMEDTGILIDTEYLGKLSKELEQELSSLEKKAYDAAEEKFNLGSPKQLGEILFEKLELN 624

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
                KT    +T     +   GD+PII  ILE+R LSK+KSTY D+LP  +NK+T+R+H
Sbjct: 625 RKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVNKKTKRIH 684

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T ++ + T TGRL+S  PNLQNIPI+T+  ++IR+AFI      L+SADYSQIELRILAH
Sbjct: 685 TNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYSQIELRILAH 744

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++ + L   ++N+ D+H + A  +F    E+++PQ R   KTINF +IYG+   R A +
Sbjct: 745 LSQESVLLNAYQNAEDVHTVTAKLLF--EKEEITPQERNLGKTINFGVIYGMGSQRFARE 802

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             +  +E  ++I +Y  R+  + EY+E  K     NGYV TI GRR +++  +      R
Sbjct: 803 AGVSATEGKEFINKYRQRYAKVFEYLENMKKEAIANGYVTTILGRRRYFNFFDDNLYRFR 862

Query: 881 NINE------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             +                   RAA NAPIQGS+ADI + AM+ + + L  +     +LL
Sbjct: 863 GHDPQTIDLNKLNINYNDSQLLRAAANAPIQGSSADIIKIAMVKIQEIL--NYYQANLLL 920

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           Q+HDELVFE+PE+E    +  I  +ME A    + L +PL V I    NW E 
Sbjct: 921 QVHDELVFEIPEKEWEELNHKIKETMENA----VKLTIPLVVEIHAGKNWMEA 969


>gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293]
 gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293]
          Length = 891

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 499/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEPSDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDVQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L   F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550]
 gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550]
          Length = 891

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 497/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+  +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMVYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 454

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 455 LEVVAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 891

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 499/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEPSDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L   F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488]
 gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum]
 gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488]
          Length = 877

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKAYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 226 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVNVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EE+    +++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
 gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
          Length = 891

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 499/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEPSDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L   F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
          Length = 876

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/982 (34%), Positives = 508/982 (51%), Gaps = 118/982 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H  V
Sbjct: 2   KNKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEER----PTHLLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDII T
Sbjct: 57  AFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ PE+M
Sbjct: 117 LAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVEEKYGLTPEQM 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK              
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG------------- 223

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++       DA   
Sbjct: 224 ------------------------------EKLKENLRQYRDLALLSKQLAAIRRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L ++    +G   E  I      K   F S  ++     +E     + +E +    
Sbjct: 251 -PVELSLDDIIYEGQDREKVI---ALFKELGFQSFLEKMDAPTAEDETPLMEMEFV---- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                      I +    +    K       +  +     +   +  + IA+        
Sbjct: 303 -----------IADGITDEMLADKA------ALVVEVMEENYHDAPIVGIAL-------- 337

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                      ++ H       +  L     S    +  +E   K   + K   + L   
Sbjct: 338 -----------VNEHGRFFLRAEMALAD---SQFLAWLADETKKKSMFDAKRAAVALKWK 383

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + D+A++A+  ++ +    E    K  K S+P     
Sbjct: 384 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 439

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +  + EH +  +  I  L      +L   +   +  +L++P+  ++++ME TGI++D   
Sbjct: 440 EPTLAEHLVRKAAAIWALERPFLDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVDTKR 499

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+
Sbjct: 500 LEQMGSELAEQLRAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTGY--STS 557

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TGRL+
Sbjct: 558 ADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQALTQTGRLS 617

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + F  
Sbjct: 618 SAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRR 677

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA++I+
Sbjct: 678 DLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIE 737

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 738 RYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQ 797

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+A  
Sbjct: 798 GSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQA-- 855

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + LRVPLKV+      W + 
Sbjct: 856 --VALRVPLKVDYHYGPTWYDA 875


>gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI]
 gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
          Length = 877

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 226 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDMEYKGYEPSDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102]
 gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102]
          Length = 877

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 501/982 (51%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 226 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ ++++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVNVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFKH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
 gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
          Length = 915

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/987 (32%), Positives = 498/987 (50%), Gaps = 104/987 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + LVDG    YRAF+A P       G P NA+ GF +ML   L++   +    +  V F
Sbjct: 11  TIMLVDGHGLAYRAFHALPDTLATASGEPTNAVFGFTSMLLDALRSYHPD----YVVVSF 66

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++ Y  YKA+R  +P+ L  Q+  +     A  IP    +G+EADD+IAT  
Sbjct: 67  DV-GRTFRHDRYEAYKAHRAPMPDDLRRQMERIHEVLAALNIPVFTREGYEADDVIATLA 125

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPEKMV 180
            +A +   +V +++ D DL+QL      +    ++        D E VI+++G PPE++ 
Sbjct: 126 RLAAERHMSVLVVTGDSDLLQLADGAVRIILPGRQRFGDYRVFDREAVIERYGFPPERIP 185

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +AL GD+ DNIPG+PGIG KTA  L+Q Y +LE                 + E+ +  
Sbjct: 186 EYKALVGDTSDNIPGVPGIGAKTATALVQAYDSLEA----------------MREHID-- 227

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                    +   PR  + L       L  R   T         
Sbjct: 228 -------------------------EIKPPRARASLAEHFEQALHGRELAT--------- 253

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            VV DI+   +    +  + DRD  ++  +        +++     PQ          + 
Sbjct: 254 -VVRDIDLELDLDTCVLGDYDRDRVLEVFRELEFRTLVNRLPEPTRPQ--------VTTA 304

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P      T +     +   +++L +  + +  + T + D   ++ + IA++T  Q+   
Sbjct: 305 PPAPPAERTIVRFDNQLGDLLEELRSAPAIALDVETTSTDPMTARLVGIALATSGQRS-- 362

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ ++         +     E+   L     + + +   H+ KYD LVL R G
Sbjct: 363 ------FYVPVNHAND----DEQLDADEVREALSPLLADPNTVVYAHHGKYDALVLERAG 412

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKISDS 536
               R   D M+ +Y+L  G ++ D+ S+A   L     E   ++   ++ + +D     
Sbjct: 413 YPRPRIAFDTMIAAYLL--GENALDLKSLAFNRLGMEMTEITTLIGRGRNQLTMDLTDVQ 470

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              ++A  +     +L  +L+P L  ++   ++  ++ P+IDV+  ME  GI +D DLL+
Sbjct: 471 AAGDYACADVEATYRLVEVLQPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLR 530

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S +++  L  LE  IY L+  +FN++S +QL  +LF +L  P+G +TKTG +  + + 
Sbjct: 531 DLSRQLTGQLAELEREIYGLAKHEFNINSTRQLATVLFDELGLPAGRRTKTG-YSVSQEV 589

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PI+  ILE+RQL K+KSTY D+LP  +N  T R+HT ++     TGRL+S 
Sbjct: 590 LENLRHA-HPIVDCILEYRQLLKLKSTYVDALPEQVNPETGRIHTSFNQTIAATGRLSST 648

Query: 717 EPNLQNIPIKTDLGQKIRRAFISP--PTK-------KLISADYSQIELRILAHIAKITPL 767
           +PNLQNIP++T+LG+ +RRAFI+   P          L+SADYSQIELR++AH++    L
Sbjct: 649 DPNLQNIPVRTELGRSVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMAHLSGDERL 708

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F    DIH   AA++FGV +E+V+P MRR AKT+NF I+YG+  + LA    + R +
Sbjct: 709 VHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMYGMQAYGLARDTGMSRQD 768

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +I RY  R PG+  ++E+TK    Q GYV ++FGRR +  +I+S   + R   ER A
Sbjct: 769 AQRFIDRYMARLPGVRAFLERTKRQALQQGYVTSMFGRRRYTPDIDSSNVNRRLAAERMA 828

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           IN P+QGSAADI + AMI VH  +    L ++MLLQ+HDEL+FEVP  E+ T + + V  
Sbjct: 829 INMPLQGSAADIMKIAMIRVHDEMRRRGLRSRMLLQVHDELLFEVPRSELRTMADLAVDV 888

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           MEK     + L VPL V +    NW E
Sbjct: 889 MEKV----VTLNVPLVVEVAAGANWDE 911


>gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 877

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 226 --------------------------------LKEKLEANKEQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGREFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
          Length = 878

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/984 (33%), Positives = 504/984 (51%), Gaps = 118/984 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKMLAEER----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVEEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++         
Sbjct: 226 ---------------------------------EKLKENLRQYRDLALLSKQLAAI---- 248

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  I      K   F S  ++     +E     + +E + 
Sbjct: 249 RRYAPVELSLDDIIYEGQDREKVI---ALFKELGFQSFLEKMDAPTAEDETPLMEMEFVA 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         I +     +          A+  +     +   +  + IA+   + 
Sbjct: 306 ADG-----------ITDEMLADK----------AALVVEVMEENYHDAPIVGIAL-VNEH 343

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     +                            +  +E   K   + K   + L
Sbjct: 344 GRFFLRAEMALADP---------------------QFVAWLADETKKKSMFDAKRASVAL 382

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPID 531
              GI +RG   D++L +Y+L+  + + D+A++A+  ++ +    E    K  K S+P  
Sbjct: 383 KWKGIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP-- 440

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              +  + EH +  +  I  L      +L   +   +  +L++P+  ++++ME TG+++D
Sbjct: 441 --DEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   
Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTGY-- 556

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TG
Sbjct: 557 STSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR ++ +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A    + LRVPLKV+      W +
Sbjct: 857 A----VELRVPLKVDYHYGPTWYD 876


>gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1]
 gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1]
          Length = 891

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 495/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEPSDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENGCYF 360

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                   T +       K++  +    K   + K   + L   
Sbjct: 361 I----------------------QTDSALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L   F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187]
 gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187]
          Length = 877

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 499/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 226 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDMEYKGYEPSDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L   F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803]
 gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I
 gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803]
          Length = 986

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1020 (31%), Positives = 510/1020 (50%), Gaps = 82/1020 (8%)

Query: 1   MQKENHLFL-VDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  ++ L L VDG S  +RA+YA  L      R   G+P +   GF N L +++++ +  
Sbjct: 3   MSAKSPLLLLVDGHSLAFRAYYAFGLSKKGPLRTTAGIPTSVCFGFLNSLMQVMESQK-- 60

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +  A+ FD    TFR+E    YK+NR + PE     L  ++   +A  +  I   G+
Sbjct: 61  --PAAIAIAFDRREPTFRHEADGAYKSNRQETPEDFAEDLSYLQQLLEALNLQTITYAGY 118

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE--------EKIDI 165
           EADDI+ T        G+ V I+S D+DL QLVSP     +    +         +++D 
Sbjct: 119 EADDILGTLACQGSDAGYQVKILSGDRDLFQLVSPEKNISVLYLTRNPFSSNTGYDELDW 178

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           + V+ K G+ P ++V  +AL GD  D IPGI GIG KTA  LL EY  LE +  N ++IK
Sbjct: 179 QGVVDKMGVTPAQIVDFKALCGDKSDCIPGINGIGEKTAIKLLAEYETLEKVYENLAQIK 238

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
               +  +    + A  S+ L  +  DVP+ +  E L L   +  RL+  L+ LE    I
Sbjct: 239 GA-LKTRLDNGKDDAMHSQMLARIVVDVPLPVTWEDLQLTGFSTDRLVPLLEKLELRTFI 297

Query: 286 NRVATTYDCDAANIEPVVL--DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
           +++   +   + N  PV +  + +  E K      +         SQ  SL D    +N 
Sbjct: 298 DKIQAFHRNFSDNQSPVPMGNEADNGEPKKTVKAKKSKEKVNPDDSQQLSLFDGVPVVNQ 357

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTM 399
           E     + L +                I     ++  V++L+         ++   TD++
Sbjct: 358 EDGLITIQLPK----------QIQPQIITTIAQLEALVEELKKHTDADFPVAWDTETDSL 407

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D   +  + I  +   +        +  +I L  H      G+      I   L +   N
Sbjct: 408 DPLVANLVGIGCAWGQE------PNQVAYIPLKHHQ-----GEQLSLGIIKDLLGEILGN 456

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LS 514
             + K+  N K+D+ VL  +GI + G   D ML SYVL    + H++  + +++    ++
Sbjct: 457 AIYPKVLQNAKFDRRVLAHHGIELGGVVLDTMLASYVLQPEET-HNLTDLCRRYNLGLVA 515

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLD 573
            + K++    K    I  +      ++   +      L   L+ +L    +L  + + ++
Sbjct: 516 LSYKDL--GLKKDQTIADLPLETAGQYCGLDCYATYLLASKLQKELDQYPELKEILKEIE 573

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
           +P+  +++ ME  GI+ID D L+ +S ++++NLL++E   Y+ +GE FNLSSPKQLG IL
Sbjct: 574 QPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTIETAAYEAAGESFNLSSPKQLGTIL 633

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F KL        KT    +T     +   GD+PII  ILE R L+K+KSTY D+LP  +N
Sbjct: 634 FDKLGLDRKKSRKTKTGYSTDHATLEKLQGDHPIIDAILEHRTLAKLKSTYVDALPELVN 693

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            +TQR+HT ++ A T TGRL+S  PNLQNIPI++D  ++IRRAF+      L+SADYSQI
Sbjct: 694 GQTQRIHTDFNQAVTSTGRLSSSNPNLQNIPIRSDFSRQIRRAFLPQKDWLLVSADYSQI 753

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRILAH+++   L Q + +  D+H + A  +FG   E ++P  R   KTINF +IYG+ 
Sbjct: 754 ELRILAHLSQEPVLLQAYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTINFGVIYGMG 811

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             R A +  I   E  ++I RY   +  + +Y+E  K      GYV TI GRR +++ + 
Sbjct: 812 AQRFARETGISAVEGREFIDRYHRTYAQVFDYLETMKLEAIAKGYVTTIVGRRRYFNFVT 871

Query: 874 SPKSSIRN------------------INERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                +R                      R+A NAPIQGS+ADI + AM+ + K LE ++
Sbjct: 872 EALRQLRGKTVTELDLVDVKMNYNDAQLLRSAANAPIQGSSADIIKIAMVKLAKLLESYQ 931

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             T+MLLQ+HDEL+FE+P EE    + +I ++ME+A    + L VPL V +   +NW E 
Sbjct: 932 --TRMLLQVHDELIFEMPPEEWEELAPLIQNTMEQA----LTLSVPLVVEMHRGSNWMEA 985


>gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264]
 gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264]
          Length = 877

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 497/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+  +   L+++   T   DA   
Sbjct: 226 --------------------------------LKEKLEENKEQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDMVYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKHTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 440

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 441 LEVVAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 877

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 500/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 226 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 344 ----CYFIQTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I 
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 882

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/978 (32%), Positives = 509/978 (52%), Gaps = 107/978 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N + ++DGSS  +RAFYA PLL  K  G+  NAI GF  M+   + N       +H AV 
Sbjct: 2   NKILIIDGSSLFFRAFYALPLLKNKK-GMYTNAIYGFVMMVENAIDNIN----PTHVAVC 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y DYK  R K P  L+ Q P +    +   I  ++   +EADDI  T 
Sbjct: 57  FDKKGRTFRHELYKDYKGTRKKTPSELMQQWPYIMDILKLMNIKTLDSPVYEADDIAGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           + +A K  F   +++ DKD  QLV   + +  T K      ++  +++  ++G+ PE+ +
Sbjct: 117 SKLAAKNDFESYLLTGDKDYFQLVDDKSTVLLTKKGITDLLEVTPKYLYDEYGLTPEEFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GDS DNIPG+PG+G KT   L++EY N+EN+  N   +  KK  EN+ E    A
Sbjct: 177 DLKALMGDSSDNIPGVPGVGEKTGIKLIKEYKNIENLYQNLDEVSGKKLNENLTENKAQA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S+KL  + T VP+   L+    E+ N        + L   KL + +            
Sbjct: 237 FMSKKLGTIVTTVPLDYKLDDFKKEEYN-------YEEL--YKLYSELD----------- 276

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                                 +++++E+ P+   ++  +    
Sbjct: 277 ---------------------------------FKTLLARLDTEKVPEIEKVDVTEL--- 300

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I    D+   + K++      FK ITD        P  I +S        
Sbjct: 301 -----TKYEVI----DLNSMIDKIKKSKLMGFKFITDGKIYEGVDPTYIGLSDGVVTSFY 351

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            +                       +K+I+  L+  FE+E   KIG++ K D ++L    
Sbjct: 352 EY-----------------------SKDIVEDLRALFEDEKIEKIGYDAKEDVIILLSKK 388

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE--ILKSRKSSIPIDKISDS 536
           I ++    D M++ Y+LDS  SS +  +I  K+ L   + E  +L           +   
Sbjct: 389 IDLKNLTYDSMIVEYLLDSTASSFEFQNIISKYDLGSYKDEQSLLGKGVKKKSYSDLEKD 448

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           ++ ++     N   +L  +   KL   +++ +Y  ++ P+++V++ ME+TGI+ +  +L 
Sbjct: 449 ELFKYFSFILNGSFKLKEIQMEKLEELEMVDLYREIELPLLEVLAYMELTGIKTEVSVLD 508

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +   +   + +L  +I+++SGE+FN++S KQLG+ILF KL+     KTKTG   +TAQD
Sbjct: 509 DIGKNLDDRIENLTSSIFEISGEEFNINSTKQLGEILFDKLRLTVIKKTKTGY--STAQD 566

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +    ++PII+NILE+R+L+K+K+TY D L   IN++T R+H+ ++   T TGR++S 
Sbjct: 567 VLEKLVDESPIIENILEYRKLTKLKNTYIDGLKALINEKTGRIHSRFNQTGTSTGRISST 626

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI+++ G+ IR AF++     L+  DYSQIELR+LA ++K   + + FE+ +D
Sbjct: 627 EPNLQNIPIRSEEGRLIRGAFLASEDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHGMD 686

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+E+F V+ E V+  +R  AK +NF I+YGIS F L+ QL I R  A +YI  YF
Sbjct: 687 IHTKTASEVFHVDKEDVTDLLRSRAKAVNFGIVYGISDFGLSRQLGITRELAKEYIDGYF 746

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             F  + EY++      ++ GYV+TIF RR +  E+++   +IR+  ER A+N PIQGSA
Sbjct: 747 DNFKKVKEYMDYEIETGKKQGYVKTIFNRRRYIPELSAKNFNIRSFGERIALNTPIQGSA 806

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V+  ++   L +K++L IHDELV +   +E+    +++   ME A    +
Sbjct: 807 ADIIKIAMVKVYGEIKKRNLKSKLILTIHDELVVDAVNDELEVVEELMKDIMENA----V 862

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPLKV++    +  E
Sbjct: 863 KLNVPLKVSLDTGKSMYE 880


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/981 (31%), Positives = 510/981 (51%), Gaps = 110/981 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++DG S +YRAF+A P L+ K +G+  NAI GF  ML K+ +    + I + 
Sbjct: 1   MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKMKEEINPDYIVT- 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR++ Y DYKA R K+P+ L  Q P+V+       I   EI+GFEADD+
Sbjct: 58  ---TFDKKAPTFRHKEYEDYKAGRAKMPDELNEQFPIVKDILNKLAINIFEIEGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ D+D +QL +    +    K     E  D   +I+++G+ P
Sbjct: 115 IGTLSKFAEEKGIEVYIVTGDRDALQLATDNVKVVINKKGMSEKEIYDKNKMIEEYGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++ L GD  DNIPG+PGIG KTA  L++EYG++EN+L N   I  KK ++N+++Y
Sbjct: 175 TQFIDVKGLMGDKSDNIPGVPGIGNKTALKLIKEYGSIENVLENVENISGKKMKQNLIDY 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A  S+KL  +  DVPI I                           +  + +  D D 
Sbjct: 235 REQAIFSKKLATICKDVPIEID--------------------------LGEIKSKEDYDI 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             +  +                        ++  F SL D     ++    Q+  ++   
Sbjct: 269 EGVRQL-----------------------FQSLGFKSLIDNIKDSDNLVEEQEAEIKEAD 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                   N   T I   +D  ++V+ +            D      +  +  +I +  +
Sbjct: 306 I-------NIKATYINTIEDFSKFVEGI------------DDSIYIQADFVDESIYSKIE 346

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            ++   + +     LS+   +D              LK  FENE   K+ H+ K   +VL
Sbjct: 347 FNNLYIRHKEEVFVLSLKEIKDKEEVKYF-----EILKNLFENEKIKKVCHDSKKVYVVL 401

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +++ I+ +    D  + +Y+L   +S + +  + ++ L  + KE           D I  
Sbjct: 402 NKHNITAKNIAFDTKIAAYLLQPSKSDYMLKDLIEEMLLLSLKEY----------DNIKI 451

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++           I  ++  L   +    +  +   ++ P+++V++ ME  G ++D++ L
Sbjct: 452 NET--------YYIKDIYEKLEKDIKESNMEELLYTVELPLVEVLASMECAGFRVDENRL 503

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++  +  K + +LE+ I++L+ E+FN+ SPKQLG ILF KL  P   KTKTG + T A+
Sbjct: 504 TEIGEKFKKEIETLEKEIHELADEEFNIKSPKQLGKILFEKLDLPVIKKTKTG-YSTNAE 562

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    +PII+ I+E+RQ++K+ STY + L N I+   + +H+ ++   T TGRL+S
Sbjct: 563 VLEKLK-DKHPIIEKIIEYRQITKLDSTYVEGLKNVIDGDGK-IHSSFNQTVTTTGRLSS 620

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPIK ++G++IR+ F+    +  + SADYSQIELRIL+HIA    L   F++ 
Sbjct: 621 TEPNLQNIPIKHEMGREIRKVFVPNNNESVIFSADYSQIELRILSHIADDEKLIDAFKHH 680

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A+E+F V I++V+P MR +AK +NF I+YGI  F L+  + + R EA +YI  
Sbjct: 681 KDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDT 740

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+P + +YI++  +    +G+V TI  R+ +  EI S    +R   ER A+N PIQG
Sbjct: 741 YFSRYPNVKKYIDEIISKAEVDGFVTTILNRKRYIPEIQSRNKIVRGFGERLAMNTPIQG 800

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+ V+  L++  L + ++LQ+HDEL+  V ++E+     ++V  ME     
Sbjct: 801 SAADIIKLAMVEVYNELKNRNLKSTLILQVHDELILNVYKDELEEVKNMVVDKMENVM-- 858

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L VPL+ ++     W E 
Sbjct: 859 --KLLVPLEADVNAGETWYEA 877


>gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 891

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 496/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+  +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEENKEQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+     +++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----NSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K +  N    K   + K   + L   
Sbjct: 358 ----CYFIQKDIALAS---------------DAFKAWLANGEMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 454

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 455 LEVVAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E+   L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELVGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/982 (33%), Positives = 511/982 (52%), Gaps = 118/982 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   +     +H  V
Sbjct: 2   KKKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEQ----PTHLLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E+  +EADDII T
Sbjct: 57  AFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGF V IIS D+DL QL S    +  T K     E    E V +K+G+ PE++
Sbjct: 117 LAARAEQEGFEVKIISGDRDLTQLASRHVTVDITKKGITDIEPYTPETVREKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   +K              
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKG------------- 223

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++   +   DA   
Sbjct: 224 ------------------------------EKLKENLRQHRDLALLSKQLASICRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L ++    +G   E  I      K   F S  ++ +       P     + L+++ 
Sbjct: 251 -PVELSLDDIVYEGQDREKVI---ALFKELGFQSFLEKMAA------PAAEGEKPLEEME 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              ++  +   + +                A+  +     +   +  + IA+        
Sbjct: 301 FAIVDVITEEMLAD---------------KAALVVEVMEENYHDAPIVGIAL-------- 337

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                      ++ H       +  L     S    +  +E   K   + K   + L   
Sbjct: 338 -----------VNEHGRFFMRPETALAD---SQFLAWLADETKKKSMFDAKRAVVALKWK 383

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + DIA++A+  ++ +    E    K  K S+P ++  
Sbjct: 384 GIELRGVAFDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAVYGKGVKRSLPDEQ-- 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + EH +  +  I  L       L   +   +  +L++P+  ++++ME TG+ +D   
Sbjct: 442 --TLAEHLVRKAAAIWALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVDTKR 499

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+
Sbjct: 500 LEQMGSELAEQLRAIEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STS 557

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     + I++NIL +RQL K++STY + L   +   T +VHT ++ A T TGRL+
Sbjct: 558 ADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQALTQTGRLS 617

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + F+ 
Sbjct: 618 SAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQR 677

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA++I+
Sbjct: 678 DLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIE 737

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+ +Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 738 RYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQ 797

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EEI    +++   ME+A  
Sbjct: 798 GSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQA-- 855

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + LRVPLKV+      W + 
Sbjct: 856 --VTLRVPLKVDYHYGPTWYDA 875


>gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271]
 gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271]
          Length = 891

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 496/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGANVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIEQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIQTDIALKS---------------DAFKEWLADGAMRKHTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 454

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 455 LEVVAEHVARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLEKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L   F+ 
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDAFQR 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDDIVKDAKQKGYVATLLKRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPQEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 908

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/980 (32%), Positives = 509/980 (51%), Gaps = 109/980 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S   RAFYA PLLS    GL  NA+ GF  ML +L++  +     +HF V F
Sbjct: 27  KLIIIDGNSIANRAFYALPLLSNSS-GLHTNAVYGFTTMLLRLIEEEK----PTHFLVAF 81

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D   VTFR++ Y +YK  R K P  L  Q PL++    AFGI   E++G+EADDII T T
Sbjct: 82  DAGKVTFRHKEYKEYKGGRAKTPSELSEQFPLIKELLNAFGIRQFELEGYEADDIIGTLT 141

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+++   V ++S DKD++QL S    +  T K     E    + + +K+G+ PE+++ 
Sbjct: 142 RAADEKKKHVMLVSGDKDMLQLASDYVTVAITRKGISEVEHYGPKEIEEKYGLKPEQIID 201

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GDS DNIPGIPG+G KTA  LL EYG++E++L +A  +K  K +E + E A+ AR
Sbjct: 202 MKGLMGDSSDNIPGIPGVGEKTALKLLHEYGSVESVLEHADELKG-KMKEKVKENADLAR 260

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S++                          L +  + +  +   + +      +   ++ 
Sbjct: 261 MSKE--------------------------LATIFREVPMSTEWDEL-VYEGYEGPKLQ- 292

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                    +  +F SL ++    N E   +    E        
Sbjct: 293 ----------------------EMFRKLEFKSLLEKLDFGNGETGKEAGKEEDPVPFEVI 330

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +  +         ++  +  ++     +  +     +  HS    + +   ++    +
Sbjct: 331 KEDQLA--------VLEAVLDYIK-----AIHVEVVGENPHHSDIAGLGLYDGNKGYFLA 377

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F                     TL       ++++  +    K   +    +L L   GI
Sbjct: 378 F--------------------ETLQSVNAEPIRQWLSDADKEKWIFDKHRAQLALSWKGI 417

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDS 536
            +RG   D++L SY+LD   S+  ++ +A K+    L    +   K  K  +P + +   
Sbjct: 418 KLRGVSFDVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQVFGKGAKFKLPEEHLLGE 477

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            +   A   S ++     +L+ KL    +  +Y  L+ P+  V+++ME+ GI++D++ LK
Sbjct: 478 NLSLKAERVSRLV----PVLKAKLEESGMQELYYELEHPLAGVLAEMELAGIKVDKESLK 533

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q+  EIS  L ++ + IY+ +G  FN++SPKQLG++LF KL+ P   KTKTG + T A+ 
Sbjct: 534 QLGTEISDQLKTIMDRIYEQAGMTFNINSPKQLGEVLFEKLQLPVQKKTKTG-YSTDAEV 592

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++    + I+ +IL +R L+K++STY + L   +   T +VHT+Y      TGRL+S 
Sbjct: 593 LEKL-APYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTIAATGRLSSQ 651

Query: 717 EPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            PNLQNIPI+ + G+KIR+ F+   P   +++ADYSQIELR+LAHI+    L + F   +
Sbjct: 652 YPNLQNIPIRLEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDM 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A ++FGV+  +V   MRR AK +NF I+YGIS + L+  L I R EA+ +I++Y
Sbjct: 712 DIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRKEASRFIEQY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  F G+  Y++      +  GYV T+  RR +  EIN+   ++R+  ER A+N PIQG+
Sbjct: 772 FSVFRGVRNYMDSIIREAKTQGYVTTLLQRRRYLPEINASNYNLRSFAERTAMNTPIQGT 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ + + L+  KL + MLLQ+HDEL+FEVPE+E+ T  +++   ME+A    
Sbjct: 832 AADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVMEQA---- 887

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           + L VPLKV +    NW E 
Sbjct: 888 LALDVPLKVEVDEGENWYEA 907


>gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 877

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 496/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G +V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK           
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+  +   L+++   T   DA   
Sbjct: 226 --------------------------------LKEKLEENKEQALMSKDLATIITDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      I      ++  F+SL ++      E  P +L         
Sbjct: 251 -PITVHVDDMAYKGYEASDVIPM---FESLGFTSLLNKLGVTPEETAPAEL--------- 297

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+     +++  +     +   +      I   +    
Sbjct: 298 ----DDITFDIV--EEVTEEMLQQ-----NSALIVEVQEDNYHKADIQGFGIQNENG--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K +  N    K   + K   + L   
Sbjct: 344 ----CYFIQKDIALAS---------------DAFKAWLANGEMRKHTFDAKRAIVALKWN 384

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 440

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 441 LEVVAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E+   L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 501 LRNMGEELVGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 559 ADVLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 678

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 679 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 738

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+E      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 739 KYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 798

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    Q++   ME A  
Sbjct: 799 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA-- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 857 --IELAVPLKVDYSYGPTWYDA 876


>gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
 gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
          Length = 872

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/977 (33%), Positives = 500/977 (51%), Gaps = 116/977 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +    L+DGSS I+RAF+A P L+ K +G+   A+ G CNM+ KLLQ  +     S+  V
Sbjct: 2   DEKFLLIDGSSLIHRAFFALPPLTNK-NGVNTGAVYGLCNMILKLLQEIQ----PSYMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E +P+YK  R   P  L  Q PL     Q+ GIP +E+  +EADDII T
Sbjct: 57  AFDKSRKTFRTEKFPEYKGQRKATPPELKEQFPLSIQLLQSMGIPTLEVDNYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
            +  A  E   V I++ D+D  QL+     +  T K        D +   +++ G+ P +
Sbjct: 117 LSSGAP-ENVQVRIVTGDRDEFQLIKGNVQVLFTKKGISNIAVYDEKAFGEEYQGLQPRQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+ L GD+ DNIPG+PG+G KTA  L+ EY  +EN+L +A  +K K  +E +    E
Sbjct: 176 IIDLKGLMGDTSDNIPGVPGVGPKTALKLITEYRTVENVLDHAEEVKGKALKEKLRNNRE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS+ L  +   VPI       +L           ++ L+F  L +R      C A  
Sbjct: 236 QALLSKDLATICLQVPIDRDPGAYVLTGL-TEESRQLMQELQFKNLWDRFVPVLGCAAG- 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                    T   +S   SL  Q     +  T            
Sbjct: 294 -------------------------TDAGSSDPLSLFGQPVAAETLDT------------ 316

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                      +I +    +  V+++   G                      ++   Q  
Sbjct: 317 ----------VEITSDAQGEALVEEIRARGKQ--------------------VALAWQLK 346

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            +   +E   +DL+           T  KE +  L    ++    K   + K     +  
Sbjct: 347 GSLPVLEMERLDLAFAGKHYVFCPETAGKEAVLSL---LQDPAISKAAADPKELYKYMMG 403

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G +++G  +D  L  Y+ + G S + I ++ +++L                        
Sbjct: 404 QGKNLQGITDDPALAGYLYEPGASGYGIQALGEEFLP----------------------- 440

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
               + E +     L  +LR KL    L  +YE ++ P+ + +++ME TGI +DQ +L +
Sbjct: 441 --AASGEGAQDTAALVPVLREKLEERGLTRLYEDIELPLTENLAEMEFTGIAVDQAMLDE 498

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           V+ E++K + +LE+  +D +GE+FNL+SPKQLG +LF KL  P   KTKTG   +T   +
Sbjct: 499 VTGEMTKKVQALEQQAWDQAGEQFNLNSPKQLGVLLFEKLGLPIIKKTKTGY--STDVSV 556

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +   G++P+I+ ++ +RQLSK+ STY   L   IN  T R+HT ++  +T+TGRL+S E
Sbjct: 557 LEALQGEHPLIETLISYRQLSKLLSTYLLGLHPLINPATGRIHTHFNQMATVTGRLSSTE 616

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP +T++G+++R  F+       L+S DYSQ+ELR++A IA+   L   F +  D
Sbjct: 617 PNLQNIPTRTEVGKRMREMFVPGEGYDLLMSCDYSQVELRVMASIAQDELLLDSFRHGQD 676

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H   A+EIFGV +++V+P MR  AKT+NF IIYGIS F LA QL +PR EAA YI+ YF
Sbjct: 677 VHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIYGISDFGLARQLGVPRGEAAQYIESYF 736

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+ G+  Y+E+ K   R+ GYVET+FGRR +  +IN+   + R+  ER AIN PIQG+A
Sbjct: 737 ARYTGVKAYMEREKQKAREMGYVETLFGRRRYLPDINAKNFNRRSFAERTAINTPIQGTA 796

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V ++L++ ++ +++LLQ+HDELV E+P  E  T  +I+  +ME A    +
Sbjct: 797 ADIIKVAMLKVARNLKEARVKSRVLLQVHDELVLEIPAAEQETVGKIVKETMEHA----V 852

Query: 957 NLRVPLKVNIKVSNNWQ 973
           +L VPL  ++ V  NW 
Sbjct: 853 DLAVPLVADVAVGKNWA 869


>gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 884

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/980 (32%), Positives = 509/980 (51%), Gaps = 109/980 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S   RAFYA PLLS    GL  NA+ GF  ML +L++  +     +HF V F
Sbjct: 3   KLIIIDGNSIANRAFYALPLLSNSS-GLHTNAVYGFTTMLLRLIEEEK----PTHFLVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D   VTFR++ Y +YK  R K P  L  Q PL++    AFGI   E++G+EADDII T T
Sbjct: 58  DAGKVTFRHKEYKEYKGGRAKTPSELSEQFPLIKELLNAFGIRQFELEGYEADDIIGTLT 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+++   V ++S DKD++QL S    +  T K     E    + + +K+G+ PE+++ 
Sbjct: 118 RAADEKKKHVMLVSGDKDMLQLASDYVTVAITRKGISEVEHYGPKEIEEKYGLKPEQIID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GDS DNIPGIPG+G KTA  LL EYG++E++L +A  +K  K +E + E A+ AR
Sbjct: 178 MKGLMGDSSDNIPGIPGVGEKTALKLLHEYGSVESVLEHADELKG-KMKEKVKENADLAR 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S++                          L +  + +  +   + +      +   ++ 
Sbjct: 237 MSKE--------------------------LATIFREVPMSTEWDEL-VYEGYEGPKLQ- 268

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                    +  +F SL ++    N E   +    E        
Sbjct: 269 ----------------------EMFRKLEFKSLLEKLDFGNGETGKEAGKEEDPVPFEVI 306

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +  +         ++  +  ++     +  +     +  HS    + +   ++    +
Sbjct: 307 KEDQLA--------VLEAVLDYIK-----AIHVEVVGENPHHSDIAGLGLYDGNKGYFLA 353

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F                     TL       ++++  +    K   +    +L L   GI
Sbjct: 354 F--------------------ETLQSVNAEPIRQWLSDADKEKWIFDKHRAQLALSWKGI 393

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDS 536
            +RG   D++L SY+LD   S+  ++ +A K+    L    +   K  K  +P + +   
Sbjct: 394 KLRGVSFDVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQVFGKGAKFKLPEEHLLGE 453

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            +   A   S ++     +L+ KL    +  +Y  L+ P+  V+++ME+ GI++D++ LK
Sbjct: 454 NLSLKAERVSRLV----PVLKAKLEESGMQELYYELEHPLAGVLAEMELAGIKVDKESLK 509

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q+  EIS  L ++ + IY+ +G  FN++SPKQLG++LF KL+ P   KTKTG + T A+ 
Sbjct: 510 QLGTEISDQLKTIMDRIYEQAGMTFNINSPKQLGEVLFEKLQLPVQKKTKTG-YSTDAEV 568

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++    + I+ +IL +R L+K++STY + L   +   T +VHT+Y      TGRL+S 
Sbjct: 569 LEKL-APYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTIAATGRLSSQ 627

Query: 717 EPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            PNLQNIPI+ + G+KIR+ F+   P   +++ADYSQIELR+LAHI+    L + F   +
Sbjct: 628 YPNLQNIPIRLEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDM 687

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A ++FGV+  +V   MRR AK +NF I+YGIS + L+  L I R EA+ +I++Y
Sbjct: 688 DIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRKEASRFIEQY 747

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  F G+  Y++      +  GYV T+  RR +  EIN+   ++R+  ER A+N PIQG+
Sbjct: 748 FSVFRGVRNYMDSIIREAKTQGYVTTLLQRRRYLPEINASNYNLRSFAERTAMNTPIQGT 807

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ + + L+  KL + MLLQ+HDEL+FEVPE+E+ T  +++   ME+A    
Sbjct: 808 AADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVMEQA---- 863

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           + L VPLKV +    NW E 
Sbjct: 864 LALDVPLKVEVDEGENWYEA 883


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1009 (31%), Positives = 484/1009 (47%), Gaps = 82/1009 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L+DG S  +R +YA         R   G+P +   GF N L ++++  + ++     A
Sbjct: 6   LLLIDGHSLAFRCYYAFAKSRQGALRTSTGIPTSICFGFLNALVQVIERQKPDA----VA 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD P  TFR+    +YKA R   P+   P    +     +  +  +   G+EADD++A
Sbjct: 62  IAFDRPEPTFRHTADENYKAQRKPAPDDFRPDFENLLDLLDSLNVSRVTAVGYEADDVLA 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---------TCLYDTVKEEKIDIEHVIKKWG 173
           T    A + G  V I++ D+DL QLV P          T    +   E+   E V  K G
Sbjct: 122 TLARQASEAGQQVKILTGDRDLFQLVDPDKKISILYLDTKGVKSGSYEEFTPELVEAKLG 181

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + PE++V  +AL GDS DN  G+ GIG KTA  L+ E+G+L+NI  N   IK    ++ +
Sbjct: 182 VKPEQVVDFKALAGDSSDNYKGVQGIGEKTAIKLIHEFGSLDNIYANLDNIKGAT-KKRL 240

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               + A   +KL  +  D P+ I L  L L   N  + I  L  LE  K I  +     
Sbjct: 241 ETDKDAAYHCQKLAKIAQDAPLDILLNELHLTGFNLEQAIGILTKLELKKFIQDIGRIQQ 300

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
              A    +    +   N  I  E           +Q S  +      N  QTP      
Sbjct: 301 IFGAETIEIPTLESVQSNNTIVDEA--------GNAQLSIFAPSDPDQNQAQTP------ 346

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA----SFKIITDTMDAFHSKPIAI 409
                    I+      I   + + + + +L+T        ++   T  +D      + I
Sbjct: 347 -----PTATISPIQPLIIDTAEKLTELIDQLKTQTDVNHPVAWDTETTGLDPREVDLVGI 401

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
                             +I ++ H      G      +I   LK   E E + K+  N 
Sbjct: 402 GCCWG------RDPGNIAYIPIAHH-----NGNQLEKTQIFQALKPILETEKYPKVFQNA 450

Query: 470 KYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK--SRKS 526
           K+D+ +    GIS+ G   D ML SYVL      H++  ++ ++L     +  K      
Sbjct: 451 KFDRAIFAHQGISLAGVVFDTMLASYVLHP-EMKHNLTDLSLRYLGNIIAKSYKDLGLTK 509

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
              I  +  S   E+   +      +   L+ +L     L  + E+++ P+  V+  ME 
Sbjct: 510 KQTIADLEISVAAEYCGLDVYTTYLVCQKLKVELKDYPDLEKLLEKVETPLEPVLCAMEN 569

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI+IDQD L+Q++ E+  +L  LE   Y+ + E+FNL+SPKQLG+ILF KL   +    
Sbjct: 570 TGIRIDQDYLQQLAEELGADLTDLEIKAYNAADERFNLNSPKQLGEILFEKLGLNTKKTR 629

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KT    +T   + +   GD+PII  ILE+R L+K+KSTY D+LP  ++ +T R+HT ++ 
Sbjct: 630 KTKTGYSTNHAVLEKLQGDHPIIDYILEYRTLAKLKSTYIDALPTLVSPKTDRIHTDFNQ 689

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S  PNLQNIP++T+  Q+IRRAFI      L++ADYSQIELRIL H+++  
Sbjct: 690 TLTSTGRLSSSNPNLQNIPVRTEFSQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEP 749

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L Q ++   D+HR+ A  IF  +  + V+   RR  K INF +IYG+   R A +  + 
Sbjct: 750 ILLQAYQAGEDVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGMGAQRFAREAGVS 809

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           + E   +I RY  R+  + EY+E  K      GYV TI  RR ++D I++    ++  + 
Sbjct: 810 KEEGRAFIDRYHERYAKVFEYLELVKKQAIAQGYVSTILQRRRNFDFISNCLIELKGSDP 869

Query: 885 ------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
                             RAA NAPIQGS+ADI + AMI +H+ L+D++   ++LLQ+HD
Sbjct: 870 KAIDLDSLDYAYNDAQLLRAAANAPIQGSSADIIKVAMIQIHELLKDYQ--ARLLLQVHD 927

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ELVFE+P EE       I  +ME+A    + L +PL V+I    NW + 
Sbjct: 928 ELVFEMPPEEWEELGSKIKTTMEQA----VPLSIPLVVDIHCGKNWLDA 972


>gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
 gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
          Length = 896

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/988 (34%), Positives = 535/988 (54%), Gaps = 104/988 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M     LFL+D  + IYR++YA    P ++    G+  +A  GFCN L +LL+  +    
Sbjct: 1   MSDPKTLFLLDAYALIYRSYYAFINNPRITTT--GINTSATFGFCNFLIELLELEK---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFD    TFR+E+Y  YKA RP +PE L   +P ++      GI  ++  G+EA
Sbjct: 55  PTHIAVIFDPEGPTFRHEMYTPYKAQRPPMPEDLRKSIPYIKKIIAGLGISCLDAPGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173
           DD I T    AEKEG+ V +I+ DKD  QLVS    +Y       K E   I  V+  +G
Sbjct: 115 DDFIGTLAKRAEKEGYTVYMITPDKDYAQLVSEKVFMYKPGRSGNKSEVWGIPEVLDHFG 174

Query: 174 IPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           I   ++++ +  L GD+ DN+PG  GIG K+AA L+ +YG+++ I  +   +K  K+R+N
Sbjct: 175 IERVDQVIDILGLMGDTADNVPGCSGIGPKSAAALVYKYGDIDGIYAHIDELKG-KQRQN 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +L+   T  LSR LV + T+VP  I  E L  +                           
Sbjct: 234 LLDCQPTVHLSRTLVTICTEVPTDITPEDLEKKHI------------------------- 268

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             D   ++P+  ++         + T+I+ DT+ K S                       
Sbjct: 269 --DVKILDPIFKELELFSLVKRVLNTDIEEDTSEKLSDIK-------------------- 306

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                         SYT   +++D    +QKLE     +  ++      ++S P  +  S
Sbjct: 307 -------------VSYT--DHSQDPASLLQKLEEADLYALYVVFKNGTLYNSWPTHLCFS 351

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T   +          +I+L    ++          EI+   +  FEN++ + I  ++K D
Sbjct: 352 TKLHE--------VSYINLPNDKNK--------ALEIILQFQAIFENKNKILISADVKND 395

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS-SIPI 530
            + L R GI ++    DI +  YVL    S HD+  +A ++L+Y      K  +  ++  
Sbjct: 396 IIWLKRAGIKLKNDIFDIKIAHYVLHPDIS-HDLGRVALEYLNYKLSGSKKEDQQLTLQF 454

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D+ + ++  + A E ++VI QL   L   L    LL +Y  ++ P++ V++ ME  G+ I
Sbjct: 455 DEEAGTEDNDFA-EKTDVIFQLHEKLCDDLQQTGLLALYNNIEMPLVFVLADMEYEGVSI 513

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQ 649
           D + L+ +S+E+ + +  +E+ IY+L+ ++FN+SSPKQLG++LF KLK  S   KTK+GQ
Sbjct: 514 DCNELQSISSELKERIDIIEKEIYELAHQEFNISSPKQLGEVLFDKLKIDSNHKKTKSGQ 573

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+ Q L ++   ++PII  IL++R L K+ +TYA++LP+ I+  T ++HT ++ A   
Sbjct: 574 YSTSEQVLVKLE-DEHPIINKILDYRGLKKLLTTYAEALPSFIDPGTGKIHTHFNQAEAA 632

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+SL PNLQNIPI+T+ G+KIR+AF+         SADYSQ+ELR++AH+++   L 
Sbjct: 633 TGRLSSLNPNLQNIPIRTEEGRKIRKAFVTGNDDYLFFSADYSQVELRLMAHLSQDKELI 692

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F + +D+H   A++I+ V +E+V+P+MRR AKT NF IIYGIS + LA +L I R E 
Sbjct: 693 HAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTANFGIIYGISAWGLAERLHISRKEG 752

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + I  YF  +PG+ +Y+E++    R+  +VETI GRR +  +INS  + +R + ER AI
Sbjct: 753 KELIDGYFDLYPGVKKYMEESVEKARKKEFVETIMGRRRYLRDINSRNAVVRGMAERNAI 812

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI + K +++  L ++M++Q+HDEL F+  + E      ++ + M
Sbjct: 813 NAPIQGSAADIIKMAMICIQKRIQEEGLMSRMIIQVHDELNFKCHKSEQYLLKSLVTNCM 872

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E      I L VPL V+    NNW E +
Sbjct: 873 EHV----IKLSVPLTVSTGFGNNWYEAH 896


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/980 (31%), Positives = 488/980 (49%), Gaps = 92/980 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     ++L+DG+++I+R ++A   LS    GLP NA   F  ML KL++    E    +
Sbjct: 1   MPDNRVIYLIDGTAYIHRGYHAVRNLSNSK-GLPTNAAFSFTRMLMKLMKEKESE----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+EI  +YKANRP + E +  Q+P +R   + F +P +E QG+EADD+
Sbjct: 56  AVVFFDAKGPTFRHEIDREYKANRPPMAEDMAVQIPYIRKIVEGFNLPIVEQQGYEADDM 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    AEKEGF   I+S DKD  Q+V+    ++D +KE  ID   V KK+G       
Sbjct: 116 IGTLAVKAEKEGFDTVIVSGDKDFAQMVTDHVTIWDPMKEIVIDRAAVEKKFG------- 168

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                             I        +   G+  + +     I +K     I E+    
Sbjct: 169 ------------------IQPAQVIDAMALSGDTSDNIKGVPGIGEKTALALIQEFG--- 207

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                             L++L                       +RV T          
Sbjct: 208 -----------------SLDNLY----------------------DRVETITKKKQKENL 228

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
               D      K + I+T  +         F+  +   + +++     +    + +   Q
Sbjct: 229 LAHRDDAYLARKLVTIDT--NAPVAWDLEAFTVKAPDNAALSALFGELEFTGLQKEFPQQ 286

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             ++   YT ++  ++++    +LE     +F   T  +D   ++ + I+++     +  
Sbjct: 287 TDLSGKRYTGVMTQQELESLAGRLEKASCFAFDTETTALDPMKARLVGISLALEPD-EAF 345

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              V   +    V   +D+         +L  L   FEN    KIG N+KYD  VL R G
Sbjct: 346 YIPVGHAYEGAPVQLDRDA---------VLRILAPAFENTKITKIGQNVKYDWTVLSRCG 396

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
             + G   D M+ +Y+L+  R S+ +  +A  +L++     +++  + K++     +   
Sbjct: 397 FKIDGPVFDTMIAAYLLNPTRRSYGLDRLAADYLNHRMISYQDVTGTGKNAKCFSAVPLE 456

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E++++   L  LL  +L    L  + E ++ P++ V+  ME+ G+ +D++ L 
Sbjct: 457 EAIPYAAEDADITFSLHRLLEKELKQGGLFELLETIEMPLVPVLMHMEMAGVAVDREALA 516

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S E+   L  LE  IY L+GE FN++SP+QLG ILF KL  P+  KTK     +T  D
Sbjct: 517 ALSKELEGQLEKLEGEIYGLAGETFNINSPQQLGVILFEKLGLPTQKKTKKKTGYSTDAD 576

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           +       + +   +L  R L+K+KSTYAD+L   I   T R+HT ++  +T TGRL+S 
Sbjct: 577 VLTTLADHHELPALLLRHRTLAKLKSTYADALAELILPETGRIHTSFNQTATATGRLSST 636

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+T+ G++IR+AF+  P    +SADYSQ+ELRILAH ++   L + FEN  D
Sbjct: 637 DPNLQNIPIRTEEGRQIRKAFVPRPGWTFVSADYSQVELRILAHYSQDPILIEAFENDED 696

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+E+F +  E ++  +RR AK INF I+YGISPF LA  L I +  A +Y+  YF
Sbjct: 697 IHTRTASEVFQLFPEMITEDVRRQAKAINFGIVYGISPFGLARDLGISQKMAKNYMDSYF 756

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+  + E+++K     R+ G   T+FGR  +  +I+SP  +++   ERAAIN PIQG+A
Sbjct: 757 SRYSRVKEFMDKAIADARETGQTRTMFGRIRYLPDIDSPNRTLQGYAERAAINTPIQGTA 816

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI+  K+L   KL + MLL +HDE+V E P +E+ T S ++   ME  C    
Sbjct: 817 ADIMKLAMIATEKALAKEKLVSVMLLSVHDEIVLECPPDEVKTVSALVADIMENVC---- 872

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
           +L V LKVN+   +NW + +
Sbjct: 873 DLAVRLKVNVAQGSNWADAH 892


>gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
 gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
          Length = 878

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/981 (32%), Positives = 497/981 (50%), Gaps = 112/981 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+++    ++DGSS +YRAF+A PLL  +  GL  NA+ GF +ML K+L   + +    +
Sbjct: 1   MKEKGTFLIIDGSSLLYRAFFALPLLQTRQ-GLYTNAVYGFTSMLLKVLDEEKPD----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A TFR++ Y +YK  R K P  L  Q+  VR    A  IP +E +G+EADD+
Sbjct: 56  AVVAFDKAAPTFRHKEYSEYKGKRDKTPGELNEQISHVREVLAALHIPIVETEGYEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A        I+S D D+ QLV     +  T +     E+ + + + +++G+  
Sbjct: 116 IGTMAKNARDIDIRPLIVSGDADIFQLVDIPAEVIYTKRGITQVERYNEDKLQERYGLTA 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+ +  + L GD  DNIPG+PG+G KTA  LL+++G LE I  N   +K  K REN+ +Y
Sbjct: 176 EQYIDFKGLKGDPSDNIPGVPGVGEKTAIKLLKQFGTLEKIYENMDELKG-KLRENLTQY 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A LS++L  +  DVP+   ++    ++ +   L              R+    +   
Sbjct: 235 KEQAFLSKRLATIVKDVPMEESIKDFARQEPDSDEL-------------RRLFEQLEFK- 280

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                              S L    +   SE+T QK   E   
Sbjct: 281 -----------------------------------SLLEKLPADGESEETKQKETAEPS- 304

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         +   +   +    +E     +  ++          P+ ++     +
Sbjct: 305 ------------YLVEGEEGYAELRAAMEKATKVAVLVL----------PVGVSWQEKPE 342

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +   +T ++ ++                 LS + +       L + ++ K    + 
Sbjct: 343 GFSVAVADKTYYLPITGENE-------------LSKIMELLTGHQALTVVYDAKTWHNLS 389

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
                +     D+ L +Y+LD   + +    +A ++L     E  K +K     ++    
Sbjct: 390 AVASDT--AVFDVSLAAYLLDPLENGYPPQKLAARYLDRILPEEPKKKKGEAVCNR---- 443

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              + +      +  L+ LL  KL    L H+YE L+ P+   +++ME TG+ +D   L 
Sbjct: 444 ---DFSCAAVRTLYDLYPLLDEKLKEASLDHLYEDLELPLAYTLARMERTGVAVDLQALD 500

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +  E  + + +LE+ IY L+GE+FNL+SPKQLG ILF KL  P+  KTKTG + T A+ 
Sbjct: 501 AMKTEFRERIGALEQEIYSLAGEEFNLNSPKQLGQILFDKLGLPALKKTKTG-YSTDAKV 559

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++    + ++  IL++R L KI +TY + L   +N++T R+HT ++   T TGRL+S 
Sbjct: 560 LEEL-APHHEVVAKILKYRTLIKILTTYLEGLSKLVNEQTGRIHTHFNQTVTATGRLSST 618

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+ + G+++RRAF+       L+SADYSQIELRILAH++K   L   F    
Sbjct: 619 EPNLQNIPIRLEEGRRVRRAFVPGKKGNLLLSADYSQIELRILAHVSKDPVLIDSFRKEE 678

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+FGV  E V+P++R  AK +NF I+YGIS + L+ QL+IPR EA +YI RY
Sbjct: 679 DIHRRTAAEVFGVLPEDVTPELRDRAKAVNFGIVYGISDYGLSQQLKIPRQEAKEYISRY 738

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R PG+ ++I       ++NGYV T+  RR +  +IN+   + R+  ER A+N PIQG+
Sbjct: 739 FERLPGVRDFIHNVVEDAKKNGYVTTLLNRRRYLPDINAKNFNQRSFAERTAMNTPIQGT 798

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V ++L       +M+LQ+HD+LVFEV EE +   ++++   ME A    
Sbjct: 799 AADIIKLAMLRVEEALAGMD-DVQMVLQVHDDLVFEVKEESLINVARLVKKQMESA---- 853

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           + L VPL V++K   NW E N
Sbjct: 854 LELAVPLTVDVKAGLNWAEMN 874


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/1015 (30%), Positives = 501/1015 (49%), Gaps = 104/1015 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L+DG S  YRA++A         R   G+P +   GF N L ++++  + +       
Sbjct: 9   FLLIDGHSLAYRAYHAFAHAKAGPLRTSTGIPTSVCFGFLNSLLQVIETQQPQG----VV 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    +FR+ +YP+YK +R + PE  +P L  ++    A  +  + + G+EADDI+ 
Sbjct: 65  IAFDRKEPSFRHLLYPNYKGDRKETPEEFIPDLENLKRLLNALNLQMVTVAGYEADDILG 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----------EKIDIEHVIK 170
           T    A    + V I++ D+DL QLV P     +    K            ++D + V +
Sbjct: 125 TLAEKAASSNYRVKIVTGDRDLFQLVDPEKQISVLYVEKNALKGIAAHGYTEVDPKVVEE 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K G+ P ++V  +AL GD  D+IPGI GIG KTAA LL+EYG+LE I  N  +IK    +
Sbjct: 185 KLGVKPNQVVDFKALCGDKSDSIPGILGIGEKTAATLLKEYGSLEGIYQNLDQIKGA-VK 243

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + +    E A+ SR L  L  DVP  I LE   L+  +   +   L+ LE  K +  +  
Sbjct: 244 KKLEAGKEDAQQSRVLAQLALDVPTDIDLEKCQLKGFDINTIRPLLEKLELKKFLQNINR 303

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
             +     + P                   D +   + S F++   +  K   +  P   
Sbjct: 304 LQEKFGGTVHPTT-----------------DINEPQQLSLFATPVSENIKEVEKTEP--- 343

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHSKP 406
                       +++     I  ++ + + +  LE         ++   T ++D   +  
Sbjct: 344 ---------VAEVSSIEPQIIDTSEKLAKLINILEQHTDTHQPVTWDTETTSLDPIEATL 394

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + I      Q  D +      +I L+      + G+     E+L+ L+   E++ + K  
Sbjct: 395 VGIGCCWGHQSTDVA------YIPLNH-----TEGEQLPQTEVLAALRSILESDQYPKAF 443

Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL------SYTRKE 519
            N K+D++VL   GI + G   D ML SYVL     SH ++ +  ++L      +Y   E
Sbjct: 444 QNTKFDRIVLLHQGIQLAGVVFDTMLASYVLRP-EDSHKLSDLCHRYLENIKSLNYKDLE 502

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMID 578
           I K++     I  +  S+V  +   ++    +L   L  +L     L ++  ++++P+  
Sbjct: 503 IPKTQ----TIANLDISRVAHYCGMDAYATFKLVPKLLAELEKAPDLYNLLIKVEQPLEP 558

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME TG++ID   LK  S ++ ++L   E+  Y+ +GE FNL SPKQL  ILF KLK
Sbjct: 559 VLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYEAAGESFNLGSPKQLSYILFDKLK 618

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                  K     +T     +   G++ II  ILE R L+K+KSTY D+LP  ++ +T R
Sbjct: 619 LSKSKSRKIKTGYSTDHATLEKLQGEDRIIDYILEHRTLAKLKSTYVDALPALVHPKTGR 678

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT ++   T TGRL+S  PNLQNIPIKT+  ++IR+AFI      L+SADYSQIELRIL
Sbjct: 679 VHTDFNQTVTTTGRLSSSNPNLQNIPIKTEFSRQIRQAFIPEEGWLLVSADYSQIELRIL 738

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+ +   L + ++N  D+HR+ A  +F  +   ++ + R   KTINF +IYG+   R A
Sbjct: 739 AHLTQEPLLVEAYQNYQDVHRVTAQLLF--DKANITSEERSIGKTINFGVIYGMGAQRFA 796

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
               +   E  ++I++Y  ++  + EY+E+ K      G+V TI GRR +++  +   + 
Sbjct: 797 RAFGLSVQEGKEFIEKYHQKYARVFEYLERVKKEAIAKGFVTTILGRRRYFEFFDDKLNR 856

Query: 879 IRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           +R                      RAA NAPIQGS+ADI + AM+ + + L+ ++   ++
Sbjct: 857 LRGEKPENLDLKKLELNFSDAQLLRAAANAPIQGSSADIIKIAMVQLQEILQQYQ--ARL 914

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LLQ+HDELVFEVP  E       I ++ME A    +NL VPL V I+   NW E 
Sbjct: 915 LLQVHDELVFEVPPHEWEELEVKIKNTMENA----VNLTVPLVVEIRSGKNWMEA 965


>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
          Length = 876

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/982 (33%), Positives = 508/982 (51%), Gaps = 118/982 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   R     +H  V
Sbjct: 2   KNKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEER----PTHLLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + +YK  R + P  L  Q PL+R    A+ IPA E+  +EADDII T
Sbjct: 57  AFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ PE+M
Sbjct: 117 LAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVEEKYGLTPEQM 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK              
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG------------- 223

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++       DA   
Sbjct: 224 ------------------------------EKLKENLRQYRDLALLSKQLAAIRRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L ++    +G   E  I      K   F S  ++     +E     + +E +    
Sbjct: 251 -PVELSLDDIIYEGQDREKVI---ALFKELGFQSFLEKMDAPTAEDETPLMEMEFV---- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                      I +    +    K       +  +     +   +  + IA+        
Sbjct: 303 -----------IADGITDEMLADKA------ALVVEVMEENYHDAPIVGIAL-------- 337

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                      ++ H       +  L     S    +  +E   K   + K   + L   
Sbjct: 338 -----------VNEHGRFFLRAEMALAD---SQFLAWLADETKKKSMFDAKRAAVALKWK 383

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+L+  + + D+A++A+  ++ +    E    K  K S+P     
Sbjct: 384 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 439

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +  + EH +  +  I  L      +L   +   +  +L++P+  ++++ME TGI++D   
Sbjct: 440 EPTLAEHLVRKAAAIWALERPSLDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVDTKR 499

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+
Sbjct: 500 LEQMGSELAEQLRAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTGY--STS 557

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     + I++NIL +RQL K++STY + L   ++  T +VHT ++ A T TGRL+
Sbjct: 558 ADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQALTQTGRLS 617

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + F  
Sbjct: 618 SAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRR 677

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IF V+ E+V+  MRR AK +NF ++YGIS + LA  L I R EAA++I+
Sbjct: 678 DLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGVVYGISDYGLAQNLNITRKEAAEFIE 737

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 738 RYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQ 797

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EE+    Q++   ME+A  
Sbjct: 798 GSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQA-- 855

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + LRVPLKV+      W + 
Sbjct: 856 --VALRVPLKVDYHYGPTWYDA 875


>gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16]
 gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16]
          Length = 877

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/981 (31%), Positives = 503/981 (51%), Gaps = 116/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  YRAF+A PLL+ +  G   NA+ GF  ML K+L++ +     SH  V 
Sbjct: 2   KKLVLIDGNSIAYRAFFALPLLNNEK-GEYTNAVYGFTTMLLKVLEDEK----PSHMLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y  YK  R K P  L  Q+P++     AF I   E+  +EADDII T 
Sbjct: 57  FDAGKSTFRHQTYAAYKGTRQKTPSELSGQIPMIHQVLDAFSIKRYEVDEYEADDIIGTA 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              A KEGF V +I+ DKDL+QLV     +  T K     ++ + E V +++G+ P++++
Sbjct: 117 ATNAAKEGFDVVVITGDKDLLQLVDDRVEVVLTKKGISEVDRYNREKVAERYGLEPKQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GDS DNIPG+PG+G KTA  LL E+ ++E +L +   I  KK            
Sbjct: 177 DLKGLMGDSSDNIPGVPGVGEKTALKLLAEFRDVETVLDSIDAISGKK------------ 224

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                          L   L+  +   L+++   T   D     
Sbjct: 225 -------------------------------LKERLQENKDQALLSKKLATIALDV---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+   +++ E  G   E +  ++   + S  S L       + E  PQ+L       + +
Sbjct: 250 PLAETLDSFEYGGY--EYKQVKEAFKELSFHSLLGRIDGNGDEESAPQQLTELDFDIVEE 307

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               + S                      ++  +     +   ++   +A++        
Sbjct: 308 PLPEHFS--------------------SPSALVVEVLAENYHQAEIAGMAVANEKG---- 343

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +         D+              + F  ++   K   + K   + L  +G
Sbjct: 344 -----CFYFPTEKAVKSDA-------------FRAFARSQEKKKWLFDAKRAVVALAWHG 385

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           + + G + D+ + SY+LD   SSH+I+ IA +  +    E      K  K S+P     +
Sbjct: 386 VDLNGVDFDLQMASYLLDPSLSSHEISDIATRKGTGGVAEDEAVYGKGAKRSLP----EE 441

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + EH    +N +  L   L  +L   + L + ++L+ P+  V+ +ME  G+++D++ L
Sbjct: 442 AALAEHLCRKANAMFTLKSTLEDELAQNEQLELLKKLEMPLSVVLGRMEKEGVRVDREQL 501

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +++  ++S  L +LE+ I+  +GE FN++SPKQLG ILF KL  P   KTKTG   +T+ 
Sbjct: 502 EEMGKDLSDRLNTLEKAIHKEAGEPFNINSPKQLGVILFEKLGLPPVKKTKTGY--STSA 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G +PII+++L +RQL K+ STY + L   I+  T +VHT ++ A T TGRL+S
Sbjct: 560 DVLEKLAGTHPIIEHLLLYRQLGKLYSTYIEGLLKVIDSETGKVHTRFNQALTQTGRLSS 619

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIPI+ + G+KIR+AF++     K+++ADYSQIELR+LAHI+    + + F   
Sbjct: 620 TDPNLQNIPIRLEEGRKIRKAFVASKEGWKIVAADYSQIELRVLAHISGDERMKEAFLTG 679

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A ++F V  E+V+  MRR AK +NF I+YGIS + L+  L I R EA D+I R
Sbjct: 680 MDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIVYGISDYGLSQSLGITRKEAKDFIDR 739

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   +P +  Y+E      ++ GYV+T+  RR +  E+ S   + R+  ER A+N PIQG
Sbjct: 740 YLASYPQVKAYMENVVKEAKEKGYVQTLLARRRYLPELKSRNFNQRSFAERTAMNTPIQG 799

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI +RAM+ + ++LE+  L   MLLQ+HDEL+FEV  +++    +++   ME+A   
Sbjct: 800 TAADIIKRAMVKMSEALEETGLKANMLLQVHDELIFEVAPDDVEPLQELVTEVMEQA--- 856

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L VPL+V++   N+W + 
Sbjct: 857 -LELDVPLQVDVSSGNSWFDA 876


>gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
 gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
          Length = 909

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/981 (30%), Positives = 498/981 (50%), Gaps = 83/981 (8%)

Query: 5   NHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L L+DGS+F++RA+++         +G P  A+ G  N +  L    +++   +   +
Sbjct: 3   HKLILMDGSAFLFRAYFSTLKQNLTNQNGFPTGAMFGVINAMKSL----QRKYQEARIII 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD     FR+ IYP YKANR  I   L+ Q+  +    QA GI  I +   EADD+IAT
Sbjct: 59  IFDARGKNFRHNIYPQYKANRKPIDGGLVVQIEPLYEMIQAMGIHFICVSKVEADDVIAT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  A +      I S DKDLMQLV       + +K    D + VI+K G+ PEK++   
Sbjct: 119 LSCCANQNNIKTIIASGDKDLMQLVGTNISQLN-MKGVLHDRQSVIEKIGVAPEKILDFL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           ALTGDS DNIPG+P +G KTA   LQ Y ++  I  NA +IK  K  E + +  +   LS
Sbjct: 178 ALTGDSADNIPGVPSVGPKTAIKWLQIYSDILGIKENAMQIKG-KVGEKLRDNFDLLDLS 236

Query: 244 RKLVMLRTDVPITIP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
            +LV L+ DV +    L+   +++ +  +L +  +   F   + ++         +I+ +
Sbjct: 237 YQLVKLKFDVVLPCNILDDEPVKNID--KLANLYQQYGFFMWLKQLDNVSVLKQKSIQVI 294

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
             D                                        T     ++ L+  SQ  
Sbjct: 295 GTD----------------------------------------TGVNNSVDILKGYSQI- 313

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                   +++       V +L+ + +  F +   ++D  ++  +      L  KD    
Sbjct: 314 -------LVLDLDIFNTMVSRLKILKTFVFSLKATSLDYMNASIVGWVF--LIDKDSFYV 364

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   +ID           K     ++L+ LK   E+    KIG N+KYD  +L  Y I 
Sbjct: 365 PVNHDYIDAP---------KQLNFNDVLNQLKPILEDVSISKIGQNLKYDAHILSNYKID 415

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQV 538
           ++G  +D+++ SY L+S  + H++  +++ +L+Y      +IL   K  +  ++++    
Sbjct: 416 LQGISDDVIVKSYCLNSVATRHNMNDLSEYYLNYQTINFVDILGKGKKQVTFNQVNVEIA 475

Query: 539 QEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +  EN  +   L  +L  ++    +L+ +Y+ L+ P+I V+  ME  G+++D ++L  
Sbjct: 476 LLYVCENVIITSLLNHMLDEEIAQYPRLVKLYQNLELPLIKVLLCMERNGVELDVNILST 535

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT--KLKFPSGAKTKTGQWKTTAQ 655
              +I++ +  ++  +++L+   FNL SPKQ+  ILF    L      KT  G   T   
Sbjct: 536 QQLDITQQMEDIKNQVFELADNVFNLESPKQIQRILFESKGLGLIPLRKTPKGVPSTNE- 594

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +   D+P++  IL +R L+K+ STY + LP  I+  T R+HT Y+   T TGRL+S
Sbjct: 595 --EALKLLDHPVVDLILSYRTLAKLNSTYLEVLPRKIDLNTHRLHTSYNQVVTATGRLSS 652

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             PNLQNIPI ++ G  IR AFI+     +ISADYSQIELRI+  ++K   L + F N  
Sbjct: 653 SNPNLQNIPIFSEQGSCIRGAFITGKGNVIISADYSQIELRIMTQLSKDQNLLEAFNNDK 712

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H   A+ +F + I++V+ + RR AK INF +IYG+S + LA Q+ + R++A  Y+  Y
Sbjct: 713 DVHSETASTMFNIPIDEVTSEYRRRAKAINFGLIYGMSAYGLAKQIGVSRTKAKQYMDTY 772

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P +  Y++  K   +  GYVETI GRR++  +IN+    ++    R AINAP+QGS
Sbjct: 773 FDNYPSVLYYMDNIKEIAKVQGYVETIMGRRLYLPQINAKNKMLQQHALRTAINAPMQGS 832

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           +ADI +++M  V+  +       +M++Q+HDELVFEV   +    S+ I   M    L  
Sbjct: 833 SADIIKKSMFDVYTWIGQDNPDIRMIMQVHDELVFEVSASKADEFSRKIQALMSNTYL-- 890

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L +PLKV++ + N+W+E +
Sbjct: 891 --LDIPLKVDVGIGNSWKEAH 909


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/980 (31%), Positives = 509/980 (51%), Gaps = 103/980 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG++  YRA+YA         G+P NA  G   ML + +++        + AV F
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSTGIPTNATYGVARMLVRFIKDHIIVGK-DYVAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++   YKA RPK P++L+ QLP ++   +A G+  +E++G+EADDIIAT  
Sbjct: 62  DKKAATFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                    + I++ DKD++QLV+    ++  VK     E  D + V +K+G+ P+++  
Sbjct: 122 VKGLPLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPQQIPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L ALTGD IDNIPG+ GIG                          K   + + +Y +   
Sbjct: 182 LLALTGDEIDNIPGVTGIGE-------------------------KTAVQLLEKYKD--- 213

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                            LE ++        +    + +    L +R         A +E 
Sbjct: 214 -----------------LEDILNH------VRELPQKVRKALLRDRENAILSKKLAILET 250

Query: 302 -VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V ++IN  E +    + E       +    S + +      SE                
Sbjct: 251 NVPIEINWEELRYQGYDREKLLPLLKELEFASIMKELQLYEESEPV-------------- 296

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + +  + ++ ++KL    S +  + T ++D F    + I++S   ++   
Sbjct: 297 ------GYRIVKDLVEFEKLIEKLRESPSFAIDLETSSLDPFDCDIVGISVSFKPKE--- 347

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I L    +Q     N   KE+L  LK+  E+     +G N+K+D  VL   G
Sbjct: 348 -----AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKG 397

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-----IDKIS 534
           +  +  + D M+ +Y+L+      ++  +A K+L Y      +    S P        + 
Sbjct: 398 VEPVPPYFDTMIAAYLLEPNEKKFNLDDLALKFLGYKMTSYQELMSFSFPLFGFSFADVP 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   ++ E++++  +L+  L  KL    L +V+ +++ P+++V+++ME+ G+ +D + 
Sbjct: 458 VEKAANYSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEF 517

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           LK++S E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG + T 
Sbjct: 518 LKKLSEEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTR 577

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++  G++ II  ILE+R++ K+KSTY D+LP  +N +T R+H  ++   T TGRL
Sbjct: 578 IEVLEEL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRL 636

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE
Sbjct: 637 SSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFE 696

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +D+H + A+ IF V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L +P  EA   I
Sbjct: 697 EGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMI 756

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + +YI++  +  ++ GYV T+FGR+    ++ +   + +   ER AIN PI
Sbjct: 757 VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPI 816

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI + + L++ K+ +KM++Q+HDELVFEVP EE     +++   M    
Sbjct: 817 QGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVKDRMTNV- 875

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              + L VPL+V++ +   W
Sbjct: 876 ---VKLSVPLEVDVTIGKTW 892


>gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3]
 gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3]
          Length = 891

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/982 (31%), Positives = 491/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK           
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKK----------- 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 240 --------------------------------LKEKLEANKDQALMSKDLATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAELD-------- 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I  D   ++      Q           ++  +     +   +      I   +    
Sbjct: 313 --DITFDIVEEVTEEMLGQD----------SALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K++  +    K   + K   + L   
Sbjct: 358 ----CYFIRTDIALKS---------------DAFKEWLADGEMRKYTFDAKRAIVALKWN 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI M+G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 454

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 455 LEVVAEHVARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLEKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+       +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMSDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIGKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELVVPLKVDYSYGPTWYDA 890


>gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 1009

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1028 (31%), Positives = 503/1028 (48%), Gaps = 89/1028 (8%)

Query: 5    NHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                LVDG S  +R++YA         R   G+P +A  GF   L +++     E    +
Sbjct: 11   PTFVLVDGHSLAFRSYYAFAKSRDGGLRTSTGIPTSASFGFLKSLLEVMAAEEPE----Y 66

Query: 61   FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             A+ FD    TFR+E    YKA+R + PE  +  L  ++     F +  +   G+EADD+
Sbjct: 67   MAIAFDLGLPTFRHEADDTYKADRTETPEDFIIDLKNLQELLSYFHLSIVTAPGYEADDV 126

Query: 121  IATYTYIAEKEGFAVTIISTDKDLMQLVS------------PTTCLYDTVKEEKIDIEHV 168
            + T    A   GF V I++ D+DL QLV+             +     T + ++   E V
Sbjct: 127  LGTLAQRASLAGFCVKILTGDQDLFQLVNTDANISVLRLGRDSFGRGGTGRGQEYGPEQV 186

Query: 169  IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            I+K GI P+++V  +AL GD+ DNIPG+ GIG KTA  LL  Y +L+ I  +  ++K   
Sbjct: 187  IEKLGIRPDQVVDYKALCGDASDNIPGVRGIGEKTAVQLLTTYNSLDRIYASLDQVKGA- 245

Query: 229  RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             R+ + +    A  S+ L  +  DVP+ I LE   L   +   LI  L+ LEF   +N+V
Sbjct: 246  VRKKLEDGKTEAYHSQHLAKIICDVPLEIELEECKLAGFDEAALIPVLEKLEFKTFLNKV 305

Query: 289  ATTY----DCDAANIEPVVLDINTTENKG-IAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
                      + +  E     I   +      I+TEI  D   K +   SLS+     N 
Sbjct: 306  KQLQKRFGGVEQSGEEASSRKIEEVDQDNRTTIKTEISEDRVSKENSDRSLSN-----NE 360

Query: 344  EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTM 399
            +       LE  ++  Q  I       I   + + + VQ L T        ++   T  +
Sbjct: 361  DDASWFWNLEDTREAQQQAILPIKPRIIHTPEQLTELVQLLRTFTDSATPVAWDTETTAL 420

Query: 400  DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
            +   ++ + I       +            DL+   +   TG+N     +L  L+   E+
Sbjct: 421  EPRDAELVGIGCCWGTGEA-----------DLAYIPTGHKTGQNLDKAIVLEALRPILED 469

Query: 460  EHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
             ++ K   N K+D+L+L   GI + G   D ML SYV+D    SH++ ++ +++L    K
Sbjct: 470  NNYPKALQNAKFDRLILRCQGIKLAGVVFDTMLASYVIDP-EGSHNLTALCKEYLE-DPK 527

Query: 519  EILKSRKSSI----PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--------EKLL 566
               KS K  +     I  ++   V  +   +     QL   LR KL            L 
Sbjct: 528  LTAKSYKDLVSKEQTIADLAIPIVANYCGMDVYTTFQLVSKLREKLEELDAEKPLTASLE 587

Query: 567  HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
             +  ++++P+  V++QME  GI+I+ + L ++S E+   L  +E+  Y+++GE+F+LSSP
Sbjct: 588  QLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQELENKLQLIEQTAYEVAGEEFSLSSP 647

Query: 627  KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
            KQL  +LF  LK       +     +T   + +    D+ ++K ILE R LSK+KSTY D
Sbjct: 648  KQLSKLLFETLKLDIKKSRRIQSGYSTDAAVLEKLQDDHEVVKTILEHRTLSKLKSTYVD 707

Query: 687  SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
            +LP  +   T RVHT ++ A+T TGRL+S  PNLQNIPI+T+  ++IR+AF+      ++
Sbjct: 708  ALPQLVRPDTGRVHTDFNQAATGTGRLSSSNPNLQNIPIRTEFSRQIRKAFLPKEGWLMV 767

Query: 747  SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            SADYSQIELRILAH+ +   L + ++ + D+H + A  +F    E V+P  RR  KTINF
Sbjct: 768  SADYSQIELRILAHLTQEPVLVEAYKTNQDVHTVTAKLLF--EKETVTPDERRLGKTINF 825

Query: 807  SIIYGISPFRLATQL-RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
             +IYG+   R A  +  +  ++A  +I+R+  R+  + EY+ + K      GYV TI GR
Sbjct: 826  GVIYGMGAQRFARSVEGVSPTQAKLFIERFNQRYSRVFEYLNRVKKDAIAQGYVSTILGR 885

Query: 866  RIHYDEINSPKSSIR-------------------NINERAAINAPIQGSAADITRRAMIS 906
            R ++         ++                       RAA NAPIQGS+ADI + AM+ 
Sbjct: 886  RRYFKFEGESVRKLKDSDVQDINLATLKNIGQNDAQLLRAAANAPIQGSSADIIKVAMVK 945

Query: 907  VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
            +H  L+D +   ++LLQ+HDELV EVP +E       I ++ME A    + L VPL V+I
Sbjct: 946  LHDILKDRQ--ARLLLQVHDELVLEVPPDEWEELQHKIKNTMENA----VELSVPLVVDI 999

Query: 967  KVSNNWQE 974
                NW E
Sbjct: 1000 HAGQNWME 1007


>gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
 gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
          Length = 952

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/981 (33%), Positives = 502/981 (51%), Gaps = 41/981 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGS++++RA++A P L+    G P  AI GF  ML  + + S+ +      AVIF
Sbjct: 3   KLLLIDGSNYLFRAYHALPPLTTSR-GEPSGAIKGFLGMLANVARLSKADR----AAVIF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+E+YP YKANRP +PE L  Q+  ++   +A G P + + G EADD+I + +
Sbjct: 58  DAPGKTFRHEMYPAYKANRPPMPEELRTQIEPLQGIVRALGWPLLIVPGIEADDVIGSLS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            +A + G    + + DKD+ QLV     L +T+  +  D E VI+K+G+PPE M+   AL
Sbjct: 118 AMAARAGVDTVVATGDKDMAQLVDDHVVLLNTMNSKFYDREGVIEKYGVPPESMIAYLAL 177

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD +DN+PGI   G KTAA  + E G ++ I   A  +K  K  EN+         +  
Sbjct: 178 MGDKVDNVPGIKSCGPKTAAKWINEIGGIDAIRAAAPTMKG-KIGENLRAGLPFIDEAVA 236

Query: 246 LVMLRTDVPIT--IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           LV ++ D  I+    L  +         L +F    E ++     A              
Sbjct: 237 LVTIKRDAVISGAETLADIKAVPAEESALEAFCARWEISRRTLDRAQALAAMGLAPAVTA 296

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                +     +       D  +K++         + ++      ++  E          
Sbjct: 297 EGAAASNAAARSASLFGVPDAPVKSAAAKGDVPAAALLDRRSEKLEVPREGPAPEDLENP 356

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM---DAFHSKPIAIAISTLDQKDDT 420
           +     ++  T+D++    +L+             +      H+    +A +        
Sbjct: 357 DETVCREVAGTEDLEALADRLQAAEGVDEPAAVTLLWDGVPRHADLGGLAFA-------- 408

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  F  L V   Q +      + +I   +K +FE+ +  K+ H+ K    VL    
Sbjct: 409 -------FTPLDVWVVQPTI--ELSSAKIFEAVKPWFES-NAPKLFHDAKAAIHVLAAQH 458

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I++ G  +D MLM YVL++  S HD+  I+ + L      R E+       +   +    
Sbjct: 459 IAVNGQIDDAMLMDYVLEAHLS-HDLVRISARELRRRIPTRDEVSGKGAKRVGWRETPPE 517

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  E++  +     +L+ +L+  EKLL VYE +++P++ V+++ME  GI +D  LL
Sbjct: 518 DAARFLAESAAALRAAGSVLKARLLADEKLLRVYEDIERPLVGVLARMESAGITVDASLL 577

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            Q S E+   +  L E  +  +G  FNLSSPKQL  ILF +   P   KT +G   T  +
Sbjct: 578 AQESKELGVEVEQLVEEAHAAAGHPFNLSSPKQLAQILFAEQGLPVVKKTASGTPSTDEE 637

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L ++     P+ K ILE R+L+K+KSTY D LP  I+ R  R+HT +  A  +TGRL+S
Sbjct: 638 VLSELALN-YPLPKIILEHRRLTKLKSTYLDKLPTLID-RDGRIHTTFGQAVAVTGRLSS 695

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           ++PNLQNIP +T  G++IR AF +     +I ADYSQ+ELRI+AH+++   L   F    
Sbjct: 696 MDPNLQNIPTRTPEGRRIRTAFTARRGWSVIDADYSQVELRIMAHLSQDAGLLSAFSRGE 755

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AAE+F   +++V+P  RR AK INF +IYG+S F LA Q+ + R  AA Y+  Y
Sbjct: 756 DIHRSTAAEVFHTPLDQVTPDQRRMAKVINFGLIYGMSAFGLAQQMGLDRQVAAAYVDEY 815

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           FH+FPG+  Y+EKT+    ++GYVET FGRR+   +I +P+  +R   ERAAINAP+QG+
Sbjct: 816 FHKFPGVKRYMEKTRAQAAEDGYVETAFGRRLWVPDITAPRPMVRAAAERAAINAPMQGT 875

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAMI+V   L   KL  K+LLQ+HDEL+ E P EE+    Q +   M  A    
Sbjct: 876 AADIIKRAMIAVDAWLRTEKLQAKLLLQVHDELIVEAPAEEVELVKQKLPELMAGAA--- 932

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L VPL  ++ V  +W + +
Sbjct: 933 -KLSVPLIADVGVGASWNDAH 952


>gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
 gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
          Length = 864

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/978 (34%), Positives = 511/978 (52%), Gaps = 124/978 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + L+DG+S ++RAF+A P L R   G+  NA+ GF NML+++LQ    +    +  V 
Sbjct: 2   KKMLLIDGNSLLHRAFHALPPL-RTSKGVHTNAVYGFLNMLFRILQEENPD----YVTVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y  YKA RPK P+ L+ Q  +++   +A  I  IE  GFEADDI+ T 
Sbjct: 57  FDKKGPTFRHDEYAAYKATRPKTPDELIGQFDILKEILKALNINFIEADGFEADDILGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +   E+EG    I++ DKD +QLVS  T +  T K     E  D E V  ++GI PE + 
Sbjct: 117 SKKGEQEGIFSIIVTGDKDALQLVSSNTNVLLTKKGISEMETYDTEKVKSRYGIRPEAVA 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTAA L+QE+  L+                N+L+  +  
Sbjct: 177 DMKGLMGDKSDNIPGVPGVGEKTAAKLIQEFKTLD----------------NVLKNTDKL 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +                             ++   L+        ++   T   D   +E
Sbjct: 221 K----------------------------GKVRENLEKYAEQAEASKYLATIVRDVP-LE 251

Query: 301 PVVLDINTTE---NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               DI   E   +K I +  +++  + I   +  + S  T + ++E T           
Sbjct: 252 FNPDDIVYCEPDYDKLINLFRDLEFYSLIDRVKIPANSIDTKEFDTETT----------- 300

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        I +   +Q+ V+K+ +  + +  +  +  D        I IS  ++ 
Sbjct: 301 -----------QNIEDNNALQKLVKKINSSKNIAVLVDAEKKDLVSYATDGIYISVENKC 349

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              S K+                         +S+LK+  E+    KI H+ K+ + VL 
Sbjct: 350 YFISHKL-------------------LKENSSISFLKQILEDTAIYKITHDGKFTRNVLR 390

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           + GI  R   D ML +Y+L+S +  +DI  +  ++L  T  +I          D      
Sbjct: 391 QLGIDFRCQFDTMLAAYLLESSKPRYDIPILVMEYLGKTMSDIP-------SFD------ 437

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                 E ++ + +L  ++  K+    +  ++  ++ P   V++ ME  GI++D   L++
Sbjct: 438 ------EKTSYLFELKKIMDEKIKDCLMDKLFYEVEMPFSVVLADMEHAGIKVDFAKLQE 491

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S    K L +L E IYDL+G +FN++SPKQLG+ILF KL  P   +TKTG + T A+ L
Sbjct: 492 LSERFGKKLAALTEEIYDLAGTEFNINSPKQLGEILFEKLSLPVIKRTKTG-YSTDAEVL 550

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++    +PII+ ILE+R L K+KSTYAD L   ++K+T R++T ++   T TGR++S E
Sbjct: 551 EKLR-PSHPIIEKILEYRFLMKMKSTYADGLSALVDKKTGRIYTSFNQTVTSTGRISSTE 609

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP+KT+ G+ IR  F S  P   L+S DYSQIELR+LAH+++   L + F +  D
Sbjct: 610 PNLQNIPVKTEEGKHIRGVFTSDGPGHVLLSGDYSQIELRVLAHMSQDPGLIEAFVSGED 669

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  A+E+FGV  E+V+P +R  AK +NF IIYGIS + LA  L I   EA +YI  YF
Sbjct: 670 IHRRTASEVFGVPPEEVTPLLRDKAKAVNFGIIYGISDYGLAQNLGISNQEAKEYIDAYF 729

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ +YI +T    +  GYV T+  RR +  +INS    +R+  ER A+N PIQGSA
Sbjct: 730 ARYPGVRDYIRETIRSAKALGYVTTLLNRRRYIPDINSRNYHLRSFAERTAVNTPIQGSA 789

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ VH +L  + L  K+LLQ+HDEL+ +VPEEE+T   +I+   ME A    I
Sbjct: 790 ADIIKIAMVKVHDNLRQNNLKAKILLQVHDELILDVPEEELTAVKEILKQHMENA----I 845

Query: 957 NLRVPLKVNIKVSNNWQE 974
            LRVPL V+ K   NW+E
Sbjct: 846 PLRVPLVVDFKQGYNWEE 863


>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
 gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
          Length = 948

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/1006 (30%), Positives = 500/1006 (49%), Gaps = 93/1006 (9%)

Query: 5   NHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L+L+D  + IYRA+YA          G   +A+ GF + L  ++   R +    + AV
Sbjct: 2   PTLYLLDAYALIYRAYYAFINRPLVDAQGRDTSALYGFASTLQDIIDKERPD----YIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D P  TFR++ YP+YKANRP+ PE +   +P ++   QA+ IP + ++G+EADD+I T
Sbjct: 58  AMDMPGGTFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
            +  A + G+ V +++ DKD  QLV P   ++   +     E +  E +  K+GI  P +
Sbjct: 118 LSRQAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYGIRYPLQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+    L GDS DN+PG PGIG   A  LL+E+  +E+I     ++K     + +L   E
Sbjct: 178 MIDYLGLVGDSSDNVPGCPGIGKVAAQRLLEEFDTIEDIYARIDQVKP-TYAKKLLAAKE 236

Query: 239 TARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              LSR LV + TDVP +T   + +     +   +    K   FT L+ R+         
Sbjct: 237 QTMLSRHLVTIVTDVPGVTFDPDQMKWRGPDHAAVERIFKEFAFTSLLKRIGK------- 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                     T  +   F       +            +     
Sbjct: 290 -----------------------PAATAAQVGLFDLGGSSAAPSLPATIEVAGPVSATTP 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           L  Y     ++T++   + + Q  ++L      +F   TD +DA  +  + +++   ++ 
Sbjct: 327 LENYKTVGVTFTEVQGYEAVSQLAKQLAGSSVVAFDTETDGLDALCAGIVGMSLCADEK- 385

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +  FI L     +           ILS LK+  ++E  LK+ HN K+D  VL 
Sbjct: 386 -------QAYFIPLPESAEE--------ATHILSPLKELMQDERVLKVAHNAKFDLEVLT 430

Query: 478 RYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIA---QKWLSYTRKEILKSRKSSIPIDKI 533
           RYG+   R   D ML  Y++D+ +  H +  +A    ++ +   K++      ++  D +
Sbjct: 431 RYGLPEARPLYDTMLAHYLIDADQG-HSLDELAGGLLRYDTIRYKDLSPLEIFALRTD-V 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               + ++A E++ V L+L+  L  +L   +   +   ++ P++ V+  ME  GI +D +
Sbjct: 489 DPKLLCDYASEDAYVTLRLYQALHKQLSPTEQ-RLLTEVEIPLLYVLMHMEQRGIVLDIE 547

Query: 594 LLKQVSAEISKNLLSLEENI--YDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQW 650
            L++   E+ +++L LE+ I  Y   G    ++SPKQ+G++LF +L+      KTKTG +
Sbjct: 548 ALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELQIMEKPRKTKTGSY 607

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L  +    +P++  IL++R+  K+ +TY D LP       + +HT Y+ A T T
Sbjct: 608 VTNEETLLPLRSL-HPVVALILDYREARKLLNTYIDPLPKMCYPDGK-LHTSYNQAVTAT 665

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPP--------------------TKKLISADY 750
           GRL+S  PNLQNIPI++DLG+ +RRAF++ P                       L+SADY
Sbjct: 666 GRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACAPVDHTHEKPIGAVLLSADY 725

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQ+ELR++AH+++   +   F +  DIH   AA++F V  E+V+P MR  AKT NF I Y
Sbjct: 726 SQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GI+P+ L+ +L IP  EAA+ IK YF  F  I  ++ +      + GY ET FGRR    
Sbjct: 786 GITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTETAFGRRRQLR 845

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            + + + + R   ER AINAPIQG+AADI + AMI V + L   +L + ++LQ+HDELV 
Sbjct: 846 NLRTARGAQRGNAERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVL 905

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            V  +E+   + ++  +ME A        VPL V I    +W E +
Sbjct: 906 NVYLDELERVTALVREAMECAWPEC---SVPLVVEIGTGKDWLEAH 948


>gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
 gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
          Length = 948

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/1006 (30%), Positives = 502/1006 (49%), Gaps = 93/1006 (9%)

Query: 5   NHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L+L+D  + IYRA+YA          G   +A+ GF + L  ++   R +    + AV
Sbjct: 2   PTLYLLDAYALIYRAYYAFINRPLVDAQGRDTSALYGFASTLQDIIDKERPD----YIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D P  TFR++ YP+YKANRP+ PE +   +P ++   QA+ IP + ++G+EADD+I T
Sbjct: 58  AIDMPGGTFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
            +  A + G+ V +++ DKD  QLV P   ++   +     E +  E +  K+GI  P +
Sbjct: 118 LSRQAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYGIRYPLQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+    L GDS DN+PG PGIG   A  LL+E+ ++E+I     ++K     + +L   E
Sbjct: 178 MIDYLGLVGDSSDNVPGCPGIGKVAAQRLLEEFDSIEDIYARIDQVKP-TYAKKLLAAKE 236

Query: 239 TARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              LSR LV + TDVP +T   + +     +   +    K   FT L+ R+         
Sbjct: 237 QTILSRHLVTIVTDVPGVTFDPDQMKWRGPDHAAVERIFKEFAFTSLLKRIGK------- 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                    ++T +   F      T   +         +     
Sbjct: 290 -----------------------PAESTPQVGLFDLGGSSTPASSPATIEVTGPVSAAAP 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           L  Y     ++T++   + + Q  ++L  I   +F   TD +DA  +  + +++   +Q 
Sbjct: 327 LENYKTVGATFTEVQGYEAVSQLAKQLAGISVVAFDTETDGLDALCAGIVGMSLCADEQ- 385

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +  FI L     +           ILS LK   ++E  LK+ HN K+D  VL 
Sbjct: 386 -------QAYFIPLPESAEE--------AAHILSPLKDLMQDERVLKVAHNAKFDLEVLT 430

Query: 478 RYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIA---QKWLSYTRKEILKSRKSSIPIDKI 533
           RYG+       D ML  Y++D+ +  H +  +A    ++ +   K++      ++  D +
Sbjct: 431 RYGLPEAHPLYDTMLAHYLIDADQG-HSLDELAGGLLRYDTIRYKDLAPQESFALRTD-V 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               + ++A E++ V L+L+  L  +L   +   +   ++ P++ V+  ME  GI +D +
Sbjct: 489 DPKLLCDYASEDAYVTLRLYHALHKQLSPTEQ-RLLTEVEIPLLYVLMHMEQRGIVLDIE 547

Query: 594 LLKQVSAEISKNLLSLEENI--YDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQW 650
            L++   E+ +++L LE+ I  Y   G    ++SPKQ+G++LF +LK      KTKTG +
Sbjct: 548 ALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKTGNY 607

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L  +    +P++  IL++R+  K+ +TY D LP       + +HT Y+ A T T
Sbjct: 608 VTNEETLLPLRSL-HPVVALILDYREARKLLNTYIDPLPKMCYPDGK-LHTSYNQAVTAT 665

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPP--------------------TKKLISADY 750
           GRL+S  PNLQNIPI++DLG+ +RRAF++ P                       L+SADY
Sbjct: 666 GRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPIGAVLLSADY 725

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQ+ELR++AH+++   +   F +  DIH   AA++F V  E+V+P MR  AKT NF I Y
Sbjct: 726 SQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GI+P+ L+ +L IP  EAA+ IK YF  F  I  ++ +      + GY ET FGRR    
Sbjct: 786 GITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTETAFGRRRQLR 845

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            + + + + R   ER AINAPIQG+AADI + AMI V + L   +L + ++LQ+HDELV 
Sbjct: 846 NLRTARGAQRGNEERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVL 905

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            V  +E+   + ++  +ME A        VPL V I    +W   +
Sbjct: 906 NVYLDELDRVTALVREAMEGAWPEC---SVPLVVEIGTGKDWLAAH 948


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1021 (29%), Positives = 491/1021 (48%), Gaps = 104/1021 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
                  LVDG S  +R+++A         R   G+P +   GF   L +++   + ++ 
Sbjct: 16  SNNPTFILVDGHSLAFRSYFAFAKGKNGGLRTKAGIPTSVCFGFIKCLLEVITTQKPQA- 74

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
               AV FD    TFR+E    YKA+R + PE  +P L  +    +   +P     G+EA
Sbjct: 75  ---IAVAFDLGLPTFRHEADDTYKADRLETPEDFIPDLENLNELLRGLNLPIFTAPGYEA 131

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVS--PTTCLYDTVKE---------EKIDIE 166
           DD++ T +  A   G+ V I+S D+DL QL+       + +   E          +   E
Sbjct: 132 DDVLGTLSQKASAAGYRVKILSGDRDLFQLIDGDKGITVLNFSPEALKRYANSITEFQAE 191

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +K G+ P ++V  +AL GD  DNIPG+ GIG KTA  LL  Y +L+ I      I  
Sbjct: 192 QVKEKLGVLPTQIVDFKALCGDKSDNIPGVRGIGEKTAVKLLNTYNSLDGIYAKLDEITG 251

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
              +E ++   E A  SR L  +  DVP+ + LE   L   +  +LI  L+ LEF K ++
Sbjct: 252 ST-QEKLIAGKEDASHSRYLAQIVVDVPLEVNLEDCQLTGFDTNQLIPILEKLEFNKFLD 310

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           ++          +                +ET+ +   T +              N+E+ 
Sbjct: 311 QINELQQKLGGQV----------------LETKAEEINTTQEDDDLWFFSGEDTANTEKR 354

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAF 402
           P      R+               I     +Q+ V  L+   +     ++   T  ++  
Sbjct: 355 PDSSIQIRI---------------INTEDKLQELVAILQKCTNLEKPVAWDTETTALEPR 399

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
            +  + I        D+ +      +I +         G N     ++S L+   EN ++
Sbjct: 400 DAALVGIGCCWGTGSDEAA------YIPVGHKI-----GHNLQLDLVVSALRPILENANY 448

Query: 463 LKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI- 520
            K   N K+D+L+    GI++ G   D ML SY+++   ++H+++ ++ + L     E  
Sbjct: 449 PKTFQNAKFDRLIFKCQGINLVGVVFDTMLASYLINPD-TTHNLSDLSLRNLGLQLTEYN 507

Query: 521 -----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDK 574
                   ++    I  I    V  +         QL   LR +L     L  +   +++
Sbjct: 508 DIVTKTGKKELQKNIADIGIDIVAYYCGTQVYATFQLVDKLRCELNKTPDLAKLLVEVEQ 567

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+  V+++ME TG++I+   L+++S ++   L  LE    +++ EKFNL SPKQL  ILF
Sbjct: 568 PLEAVLAEMEYTGVRINSSYLQELSQQLESELAKLEIQATEIASEKFNLDSPKQLSYILF 627

Query: 635 TKLKFPSGAKTKTGQ-WKTTAQDLEQINCGDNP-IIKNILEWRQLSKIKSTYADSLPNHI 692
            KL   +    K    + T A  LE++   DN   +  I+E+R  SK+KSTY D+LP  +
Sbjct: 628 DKLGLSTKYSRKIQTGYSTDAATLEKLQEVDNTGFVDAIIEYRTSSKLKSTYVDALPALV 687

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           + ++QR+HT ++  +T TGRL+S  PNLQNIPI+T   ++IR+AF+      +++ADYSQ
Sbjct: 688 HPQSQRLHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMVAADYSQ 747

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRILAH+++   L Q ++ + DIH + A  +F    ++V+ + RR AKTINF +IYG+
Sbjct: 748 IELRILAHLSQEPVLVQAYKQNEDIHTVTAKLVF--EKDEVTSEERRFAKTINFGVIYGM 805

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
              + A    + ++ A ++I+R+  R+P +  Y+EK K      GYVETI GRR ++D  
Sbjct: 806 GSLKFARSTGVDKANANEFIRRFNERYPQVFAYLEKVKKEAISQGYVETILGRRRYFDFT 865

Query: 873 NSPKSSIRNIN-------------------ERAAINAPIQGSAADITRRAMISVHKSLED 913
           +     ++ I+                    R+A NAPIQGS+ADI + AM+ +H+ L  
Sbjct: 866 SKSLKELKGISLEDIDLSRLKNLGAYNAGLLRSAANAPIQGSSADIIKIAMVQLHEVLR- 924

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                ++LLQ+HDELVFEVP +E       I   ME A     +L VPL V+++  +NW 
Sbjct: 925 -NYQARLLLQVHDELVFEVPPQEWGELQLQIKSVMENAM----SLSVPLVVDVRAGDNWM 979

Query: 974 E 974
           E
Sbjct: 980 E 980


>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
          Length = 977

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1010 (31%), Positives = 495/1010 (49%), Gaps = 93/1010 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             LVDG S  +R+++A         R   G+P +   GF   L +++   + ++     A
Sbjct: 17  FILVDGHSLAFRSYFAFAKGRDGGLRTKTGIPTSVCFGFLKSLLEVMATQQPQA----MA 72

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E    YKA+RP  PE  +P L  +    + F +P     G+EADD++ 
Sbjct: 73  IAFDLGLPTFRHEADDTYKADRPGTPEDFVPDLKNLHELLEGFNLPIYTAPGYEADDVLG 132

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP-----------TTCLYDTVKEEKIDIEHVIKK 171
           T    A  EG+ V I++ D+DL QLV P                 T    ++  E V ++
Sbjct: 133 TLAQKATAEGYKVKILTGDRDLFQLVDPEKEITVLNFSPDALKRSTNSITEVSTEQVKER 192

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P ++V  +AL GD  DNIPG+ GIG KTA  LL  YG+L+ +    + IK    ++
Sbjct: 193 LGVLPTQVVDFKALCGDKSDNIPGVRGIGEKTAVQLLSTYGSLDGVYKALNEIKGAT-QK 251

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E  E A  S+ L  +  DVP+ + LE   L   +   LI  L+ LEFT+ ++++   
Sbjct: 252 KLAEGKEDAAKSQFLAKIVVDVPLEVNLEDCKLVGFDESLLIPILEKLEFTRFLSQINDL 311

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                G  +ET     + I+T+ F    D  +   +E+T     
Sbjct: 312 ----------------QLRFGGTVVETPKTETSAIETTNFE--DDDIAFYTAEETQAIQQ 353

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHSKPI 407
            +    +    IN            + + VQ L+   +     ++   T  ++   +  +
Sbjct: 354 NQPASPIQPRIIN--------TEAKLIELVQILQQFTNPETPVAWDTETSALEPRDAALV 405

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            I      + D ++      +I L+      + G+N     +L+ L+   E+  + K   
Sbjct: 406 GIGCCWGTETDASA------YIPLAH-----TKGENLNQDIVLAALRPILESADYPKTFQ 454

Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           N K+D+LV    GI++ G   D ML SYVL+   +SH++  + Q++L  T +  +     
Sbjct: 455 NAKFDRLVFLVQGINLTGVVFDPMLASYVLNPD-TSHNLTDLTQRYLGLTIQNYVDLVPK 513

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
              I  I+ S V  +         QL   LR +L     L  +   +++P+  V++ +E 
Sbjct: 514 GKTIADINISAVANYCCLQVYATFQLVAKLREELAKTPNLDKLLREVEQPLESVLATVEY 573

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGA 643
           TG++I+   L ++S ++  +L  L+E   +L+GEKFNL SPKQL  ILF KL        
Sbjct: 574 TGVRINSAYLHELSQQLEIDLAKLQEQATELAGEKFNLGSPKQLSYILFEKLGLSTKYSR 633

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           K +TG     A   +     D   +  I+E+R LSK+KSTY D+LP  +   TQRVHT +
Sbjct: 634 KIQTGYSTDAATLEKLQEVDDTGFVNAIIEYRTLSKLKSTYVDALPALVRPDTQRVHTDF 693

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           +  +T TGRL+S  PNLQNIPI+T   ++IR+AF+      + +ADYSQIELRILAH+++
Sbjct: 694 NQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMAAADYSQIELRILAHLSQ 753

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L Q ++ + DIH + A  +F    E V+   RR AKTINF +IYG+   + +    I
Sbjct: 754 EPLLVQAYQQNEDIHTVTAKLVF--EKEDVNSDERRIAKTINFGVIYGMGSLKFSRSTGI 811

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            ++ A ++IKR+  R+  I  Y+E  K      GYVETI GRR ++D  N+    ++   
Sbjct: 812 DKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGRRRYFDFTNNSLRKLKGSK 871

Query: 884 E-------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
                               R+A NAPIQGS+ADI + AM+ +H+ L+  K   ++LLQ+
Sbjct: 872 PEDIDLSKLKNLGPYDAGLLRSAANAPIQGSSADIIKIAMVQIHEVLK--KYQARLLLQV 929

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDELVFEVP +E       I   ME A    + L VPL V+++   NW E
Sbjct: 930 HDELVFEVPPQEWAELQPQIKSVMENA----VKLSVPLVVDVRAGENWME 975


>gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118]
 gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118]
          Length = 892

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/987 (33%), Positives = 516/987 (52%), Gaps = 113/987 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +++N L L+DG+S  +RAF+A          H+GL  NAI GF NML  +L         
Sbjct: 3   EEKNKLLLIDGNSVTFRAFFALHNSLSRFVNHEGLHTNAIYGFKNMLDSILTKVN----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  V FD    TFR E + DYK  R K P  L  Q P ++   + +GI   E++ +EAD
Sbjct: 59  THILVAFDAGKTTFRTEKFTDYKGGRAKTPSELSEQFPEIKNLLEGYGIKTYELKNYEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           DII T    AEK+ + V +++ D+DL QL +    +  TVK     E+    HV +K G+
Sbjct: 119 DIIGTLAAKAEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIGL 178

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE++V ++AL GD+ DN PG+  IG KTA  LL++YG L+ I  N   +K+ K +EN++
Sbjct: 179 IPEQIVDMKALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENLI 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E A L + L  +R D P                                        
Sbjct: 239 REKEIAYLCQDLAEIRKDAP---------------------------------------- 258

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                  V +D+  TE  G  IE  +   T  +   F     Q    +SEQ      L+ 
Sbjct: 259 -------VEIDLEETEWTGKNIEKLV---TLYQKLDFRKFLSQLKAESSEQ------LDI 302

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            +  S       +   + +         K+       F +  D  +   ++ I  +I   
Sbjct: 303 FESKSNIEFTELTEENLNDI--------KISDNDEIVFNLEIDGENYHTAEIIGFSIKIG 354

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           D+                      S   + L K     +K   E++       + K   +
Sbjct: 355 DK-------------------YLVSDDIDLLKK---KQIKNLLESDEVEVDLFDGKRQYV 392

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIP 529
            L+R G+++     D++L+SY+LD+  +S+D+  +AQ+   Y  +       K  K ++P
Sbjct: 393 GLNRLGVTLSKINFDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDEQIYGKGAKHAVP 452

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            DK     + EH +     I  L   L  +L   + L +Y ++++P+  +++ MEI G++
Sbjct: 453 EDK---EVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIILANMEIAGVK 509

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D + L+ + +E+ + L  LE+ IY+ +GE+FNL+SPKQLG ILF KLK P   KTKTG 
Sbjct: 510 VDSNRLETMQSELKERLSELEQEIYNEAGEEFNLNSPKQLGVILFEKLKLPVIKKTKTGY 569

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +TA  + +   G +PI+ NIL++RQL+KI+STY + L   ++K+  + HT Y+   T 
Sbjct: 570 --STAVGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYTQTLTS 627

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PNLQNIP++ + G+KIR+AF+   P  ++ S+DYSQIELR+LAHI+K   + 
Sbjct: 628 TGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQ 687

Query: 769 QVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           + F+  +DIH   A  IF V+  ++V+P MRR AK +NF I+YGIS + L+  + I R +
Sbjct: 688 EAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQ 747

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +I  Y   F G+ +Y+EK   F ++NGYVETIF RR +  +I S   ++R+  ER A
Sbjct: 748 AKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTA 807

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N+PIQGSAADI + AMI++ + L++  L  KMLLQ+HDEL+FE P EEI     ++   
Sbjct: 808 MNSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKV 867

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+ A    + L VPLKV  K    W +
Sbjct: 868 MDSA----VKLDVPLKVESKHGQTWFD 890


>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125]
 gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125]
          Length = 876

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/983 (32%), Positives = 513/983 (52%), Gaps = 121/983 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML K+L++ +     +H  V 
Sbjct: 2   KKLVLIDGNSIAYRAFFALPLLNNDK-GVYTNAVYGFTMMLLKVLEDEK----PTHMVVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y  YK+ R K P  L  Q PL+R    AF I  +E++ FEADD+I T 
Sbjct: 57  FDAGKTTFRHDTYDAYKSGRQKTPPELSEQFPLIRELLDAFNIARVEVENFEADDLIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              A +E F V I + DKDL+Q+VS    +  T K     +  D + + +++GI PE+++
Sbjct: 117 AKQASQENFEVKIFTGDKDLLQIVSDHVTVALTRKGITQIDVYDEKGIEERYGITPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GDS DNIPG+PGIG KTA  LL+EYG++                E +LE  +  
Sbjct: 177 DMKGLMGDSSDNIPGVPGIGEKTALKLLKEYGSV----------------EKVLESID-- 218

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                    + +G ++   L+      L+++   T   +A    
Sbjct: 219 -------------------------EISGKKMKERLEEHRDQALMSKKLATIYLEA---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV LD ++          + +     K   F+SL D+                  + + +
Sbjct: 250 PVTLDADSF---TFGEYDKKEVVKLFKELDFNSLLDKVDADG-------------EGIEK 293

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             + + +Y  +         V++      A+  +     +      + +AI+  +     
Sbjct: 294 EELQSLNYETLRE-------VKEAHLADKAALVVEVLDENYHQGDILGLAIAHNNG---- 342

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEIL--SYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                  +I                T E L    L ++ ++E   K   + K   + L  
Sbjct: 343 -----CYYIP---------------TDEALRSEALIQWLKDERKEKWLFDAKRAVVALGW 382

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE---ILKSRKSSIPIDKI 533
             I + G   D+ + SY+LD   S H+++ + +     +  ++     K  K  IP    
Sbjct: 383 KNIELAGSTFDLQMASYLLDPSTSFHEVSDVTKHHRKGHVHEDEAVYGKGAKRRIP---- 438

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            + ++ EH    ++ I QL   +  KL   + L ++  L+ P+  ++ +ME TG+++D +
Sbjct: 439 DEKELGEHLARKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVKVDVE 498

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+Q+  +++  L  LE+ I++L+G  FN++SPKQLG+ILF KL+ P   KTKTG   +T
Sbjct: 499 QLEQMGEDLNARLEELEQTIHELAGVSFNINSPKQLGEILFEKLQLPVIKKTKTGY--ST 556

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +   G + II +IL +RQL K+ STY D L   ++K T +VHT ++ A T TGRL
Sbjct: 557 SADVLEKLAGQHEIIDHILHYRQLGKLNSTYIDGLLKVVHKGTGKVHTRFNQALTQTGRL 616

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+ + G+KIR+AF+       +++ADYSQIELR+LAH A+   L + F 
Sbjct: 617 SSTDPNLQNIPIRLEEGRKIRKAFVPSEKDWFILAADYSQIELRVLAHFAEDEKLMEAFR 676

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +D+H   A ++F V+ E+V+  MRR AK +NF I+YGIS + L+  L I R EAA +I
Sbjct: 677 EDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAVNFGIVYGISDYGLSQNLGITRKEAATFI 736

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RYF  +P + EY++   +  R+ GYV T+  RR +  ++ S   + R+  ER A+N PI
Sbjct: 737 ERYFASYPKVKEYLDHVIDEAREKGYVTTLLKRRRYLPDLTSRNFNQRSFAERTAMNTPI 796

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AM+ +   +++  L +++LLQ+HDEL+FEVP+EE+    +++   ME+A 
Sbjct: 797 QGTAADIIKQAMVQMASRMDEEDLQSRLLLQVHDELIFEVPKEEVAQMKELVTSVMEQA- 855

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
              + LRVPLKV++   + W + 
Sbjct: 856 ---VELRVPLKVDVACGDTWYDA 875


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/979 (32%), Positives = 509/979 (51%), Gaps = 108/979 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K   L LVDG+S I+RAF+A P L +  +G+  NA+ GF  ML K  +  + +    + 
Sbjct: 3   TKTARLLLVDGNSVIHRAFHALPPL-QTREGIRTNAVYGFATMLQKAREMFKPD----YI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD+  VTFRNE+Y +YK  RP+    L PQ  LV+    A+ + + E++G+EADD+I
Sbjct: 58  IVAFDHSKVTFRNELYDEYKGTRPETDPELRPQFALVKRLLAAWNLASCEVEGYEADDLI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T +      G  V I++ D+D +QLV     +    +     E ID E + K +G+ PE
Sbjct: 118 GTLSRQGAATGLEVLILTGDRDALQLVGERVKVLLMRRGLSQVEVIDREAIKKNYGLEPE 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++AL GD+ DNIPG+PG+G KTA  L+++YG+LE +L ++  IK ++  EN++ +A
Sbjct: 178 QLIDVKALMGDASDNIPGVPGVGEKTAVQLVRQYGDLEGVLAHSGEIKGRRVAENLVTFA 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + ARL+R+L  +                                                
Sbjct: 238 DQARLARRLATIDCQA-------------------------------------------- 253

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              PV LD+    N+    E  +      K  +F SL     K       Q+      + 
Sbjct: 254 ---PVTLDLAGCCNQSPDYEAVL---ALYKELEFHSL----VKDVLRAMEQEGKKASQET 303

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++      + + +++ + V +L      + ++I +      +  +A+ ++  D  
Sbjct: 304 TAVRGLSLPDPLTLDSLEELAELVARLVGKTDVALELILNNPSYLEAAAVAVGLAWEDG- 362

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              +          ++  +                L+          I H+ K   +   
Sbjct: 363 --VAVLGTAGIEPAALAGT----------------LEPLL---RVNPIFHDAKRALVWFS 401

Query: 478 RYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G  +     D M+  Y+L+   S HD+  +  + L+               +  +   
Sbjct: 402 NAGAGVADPGGDTMVAGYLLNPSASRHDLPELCLEHLN---------------LALVEGD 446

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             Q  A   + VI  L   L  KL V  + ++Y R++ P+  V+  ME  G+ ++ + L 
Sbjct: 447 SPQLAAARRAAVIRLLHRELASKLQVAGMENLYRRVELPLTRVLGAMESYGVAVNMETLD 506

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +  E+   L +L E IY+L+GE+FNL+SPKQL  ILF KL  P   +TKTG + T A  
Sbjct: 507 LMGIELEGGLAALTEAIYELAGEEFNLNSPKQLAVILFEKLGLPPVKRTKTG-FSTDAAV 565

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++ C  +PI   ++E+RQL+K+KSTY D L   +N RT  +HT ++   T TGRL+S 
Sbjct: 566 LEELACR-HPIAAKLVEYRQLAKLKSTYVDGLKPLVNPRTGSLHTSFNQTVTATGRLSSS 624

Query: 717 EPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIP++ +LG+++R+AF+   P + L++ADYSQIELRILAHI+    +   F    
Sbjct: 625 EPNLQNIPVRLELGRRLRKAFVPHGPGRLLLAADYSQIELRILAHISGDEAMIAAFRRGE 684

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   AAE+FGV + +V+P MRR AK +NF I+YGIS + L+  L I RSEA DYI+RY
Sbjct: 685 DIHARTAAEVFGVPLGEVTPAMRRSAKAVNFGIVYGISDYGLSRDLGISRSEAHDYIERY 744

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+ G+  Y+E+     RQ GYV T+ GRR +  ++ S   ++R+  ER A+N PIQG+
Sbjct: 745 FRRYRGVKAYLEEIVARARQEGYVTTLLGRRRYLPDLFSSNRNVRSFGERTAMNTPIQGT 804

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ + + LE    A +M+LQ+HDEL+F+VP++++   + ++  +ME      
Sbjct: 805 AADIIKMAMVKIFRLLEAQYPAARMILQVHDELIFDVPDDDLPAVAGLVKDTMEH----T 860

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L+VPL+V++K   NW +
Sbjct: 861 LELQVPLQVDLKAGPNWYD 879


>gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 972

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1012 (31%), Positives = 506/1012 (50%), Gaps = 81/1012 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           E  L L+D  +  +R FYA    PL++ K  G  V+ + G+   + ++L   +     +H
Sbjct: 3   EKTLLLLDSFALAFRMFYAYSQNPLVNSK--GEDVSMMHGYWGAVLRILAKHK----PTH 56

Query: 61  FAVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           FA+  D     TFR+E+YPDYKANR  +PE +  Q+PL+  + +A GIP +   G+EADD
Sbjct: 57  FAIARDVAHTKTFRHELYPDYKANRGPMPEEMAAQMPLLCESMEASGIPLLSEPGYEADD 116

Query: 120 IIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIP 175
           ++A+    A   GF  V IIS DKD+ Q+V+    L+   K         + V++K+GIP
Sbjct: 117 VMASAAEAAVNAGFDHVVIISKDKDMSQIVTDKIHLFHLEKGADGIDFGPQQVLEKYGIP 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PEK+    AL GDS DN+PG+P +G KTA  LL EYG+++NI  N   IK+K   +N+  
Sbjct: 177 PEKIRDYLALMGDSSDNVPGVPKVGPKTAIQLLTEYGDMDNIYANLDNIKKKGLHDNLAN 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LSR+LV L+T       L+ L     +   L    +  E   LI  +       
Sbjct: 237 NKEQAFLSRELVTLQTKRAYHGNLDALEFCGLHSDTLEGIFREHEINSLIRLLEN----- 291

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                   +   T   +    +       +  TS  +S     SK+     P  L     
Sbjct: 292 --------VPSKTGFVRKDDSDDSAAGSESNGTSDDASGDSSNSKVVKASFPADL----- 338

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL- 414
                      +Y  + N +  +Q  ++ +          TD +D      + + ++   
Sbjct: 339 ---------PPTYICVDNDEVFEQMKKEFDEATEIGIDTETDGLDPMQCNIVGLCLAAAA 389

Query: 415 -DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-------------- 459
            D      + +     D          G N        +   F+ +              
Sbjct: 390 KDGSVPKGYYIPLGHTDDIGFPYPAGKGGNFDFNATKKWFIDFWNDSCTLPGDISDSGSK 449

Query: 460 -EHFLK---IGHNIKYDKLVLHR-YG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
                K   + HN K+D  VL R +G     I      D ++ +++L  G++   + +  
Sbjct: 450 QPDSAKRSLVFHNAKFDLHVLARTFGLTQKQIDSANIIDTLIAAWMLSPGQTGLGLDNQV 509

Query: 510 QKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            + L +     + ++   K  I  ++       E+  E++   L+LW  LR KL      
Sbjct: 510 MQLLQHEMIPIENLIGRGKKQITFNRTPIKDATEYGAEDAVYTLRLWAPLRAKLQKYDYE 569

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
             +   + P++ V+ QME  G  +D  +LK++  ++   +  LE+ I D++G +FN+ SP
Sbjct: 570 KYFFSQEMPLLKVLYQMEGVGAFVDTKILKKLQTDLEHRIEKLEKEICDMAGCEFNIGSP 629

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTYA 685
           KQLG++LF  L  P   K  T      A  LE+++    +PI+  ++E+R+L K++STY 
Sbjct: 630 KQLGEVLFDTLGLPEIKKRST-----DAAVLEELSFRSAHPIVFAVIEYRELKKMQSTYV 684

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKK 744
             LP  +N  T+R+HT +    T TGRL+S +PNLQNIP+++DLG++IR AF+   P   
Sbjct: 685 SVLPTLVNPDTKRIHTSFIQWGTATGRLSSRDPNLQNIPVRSDLGKQIRAAFVPQNPNNV 744

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           +++ DYSQIELR+LAH++    L + ++  +DIH   AA I  V++E V+  MRR AK +
Sbjct: 745 ILAVDYSQIELRMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTADMRRDAKVV 804

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF ++YG++ FRL+  L+IP ++A  +I  YF  + G+ ++I+ TK    ++GYVET+ G
Sbjct: 805 NFGVLYGMTAFRLSRDLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKAAAHRDGYVETLSG 864

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +   I+S       + ER A+N P+QGSAAD+ + AMI + K + D  L  +M+LQ+
Sbjct: 865 RRRYIAGIDSSDRMESQMAERMAVNTPVQGSAADLIKIAMIRIQKRINDENLPLRMMLQV 924

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           HDELVFE P++++   S ++   ME A      L+VPL  ++    NW E +
Sbjct: 925 HDELVFECPKDQVEALSAMVKSEMEGAM----ELKVPLVASVGFGKNWLEAH 972


>gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
 gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
          Length = 890

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/981 (31%), Positives = 496/981 (50%), Gaps = 96/981 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  +FL+D S +I+RAF+A   L+   DG+P  A+ GF NML K+L  +R     SH
Sbjct: 1   MPDKPTIFLLDASGYIHRAFHAVKGLAT-SDGVPTGAVFGFVNMLLKVLAEAR----PSH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV++D    TFR++I+P YKANRP +   L  QLPLVR    A  +PA+E++GFEADD+
Sbjct: 56  LAVVYDAKGPTFRHQIFPAYKANRPPMDPALKAQLPLVRQLVTALCLPAVEMEGFEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    A ++GF V ++S DKDL+QLV P   L+DT+K+ ++  E V +K G+PPE  V
Sbjct: 116 MATLARQAREQGFEVVLVSADKDLLQLVGPGVSLWDTMKDLRLGPEEVRQKTGLPPELQV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QALTGD+ DN   +PG                         +  K   + + E+    
Sbjct: 176 DMQALTGDASDN---VPG----------------------VPGVGPKTAVKLLAEH---- 206

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                          +++   A++ +KL               E
Sbjct: 207 --------------------------PGLEAVLAAAPAMKKSKLR--------------E 226

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            ++ + +        +    D     + + F  +      +    T  +         + 
Sbjct: 227 SLIENKDMALLSRRLVRLRDDAPLRFEPAAFRVVEPDRDVLLPLLTRLEFNKLIKDFAAA 286

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P     Y ++ +  ++ + +++ +  G  +    T ++D   +  +  ++         
Sbjct: 287 GPRPQADYRRLTDLDELARVLEQAKAAGQLAIDTETTSLDPIRADLVGFSLCVSPG---- 342

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +  L+     D        ++ L  L +   +   LKIG N+KYD  VL R G
Sbjct: 343 ----LAYYAPLAHDWPADEP--QAPRRQALDLLGQALADPGLLKIGQNLKYDLNVLRRAG 396

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKISD 535
           +S+ G   D M+  Y+L+  ++SH + +IA + L        + +    K      +   
Sbjct: 397 LSVAGPLFDTMVADYLLNPAKASHGLEAIAAEHLGRGVIGFEEAVGGKGKG---FAQAPP 453

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +   +A E+++V LQ    L PKL    L  +++ L+ P+  ++++ME  G+ ID + L
Sbjct: 454 ERAVPYAAEDADVALQAAQALGPKLDEADLRRLFDELEMPLTPLLAKMERYGVLIDAEEL 513

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++SAE+ + L + E+ IY L+G +FN++S +QLG +LF +L      KTK     +T  
Sbjct: 514 GRLSAELDQALAAGEQKIYALAGHEFNINSTQQLGQVLFDELGLSQVKKTKKRTAYSTDM 573

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            +  I    +P+   +L +R  +K+KSTY D+LP  IN  T RVHT ++   T TGRL+S
Sbjct: 574 SVLAILAAQHPLPAEVLAYRANAKLKSTYVDALPALINPDTGRVHTSFNQCVTATGRLSS 633

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            +PNLQNIP++ +LG+++R  F+  P + L+SADYSQIELR+LAH+++   + Q     L
Sbjct: 634 SDPNLQNIPVRGELGRRMRGCFVPAPGRLLVSADYSQIELRVLAHLSQDPLMLQDMAEGL 693

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H   AA IF V    V+ +MR  AKT+NF ++YG+S FRLA +  + R+EA D I RY
Sbjct: 694 DVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLYGMSAFRLAREQGVSRAEAEDIIARY 753

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
             R+ G+  + ++  +  RQ GYV TI GRR     INS     R   ER A+N PIQGS
Sbjct: 754 LGRYQGVARFQQQNLSQCRQRGYVTTILGRRRFLPAINSSDRQAREAAERVALNTPIQGS 813

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V + L  H   + M+LQ+HDELVFE PE  +   +Q +   ME      
Sbjct: 814 AADIIKLAMLRVDEMLTRHYPDSPMILQVHDELVFETPEGGVEQFAQAVRRCMEDV---- 869

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           + L V LKV++    +W + +
Sbjct: 870 LKLDVELKVDVGWGRDWAQAH 890


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/980 (31%), Positives = 509/980 (51%), Gaps = 103/980 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG++  YRA+YA         G+P NA  G   ML + +++        + AV F
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSTGIPTNATYGVARMLVRFIKDHIIVGK-DYVAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++   YKA RPK P++L+ QLP ++   +A G+  +E++G+EADDIIAT  
Sbjct: 62  DKKAATFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                    + I++ DKD++QLV+    ++  VK     E  D + V +K+G+ P+++  
Sbjct: 122 VKGLPLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPQQIPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L ALTGD IDNIPG+ GIG                          K   + + +Y +   
Sbjct: 182 LLALTGDEIDNIPGVTGIGE-------------------------KTAVQLLEKYKD--- 213

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                            LE ++        +    + +    L +R         A +E 
Sbjct: 214 -----------------LEDILNH------VRELPQKVRKALLRDRENAILSKKLAILET 250

Query: 302 -VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V ++IN  E +    + E       +    S + +      SE                
Sbjct: 251 NVPIEINWEELRYQGYDREKLLPLLKELEFASIMKELQLYEESEPV-------------- 296

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + +  + ++ ++KL    S +  + T ++D F    + I++S   ++   
Sbjct: 297 ------GYRIVKDLVEFEKLIEKLRESPSFAIDLETSSLDPFDCDIVGISVSFKPKE--- 347

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I L    +Q     N   KE+L  LK+  E+     +G N+K+D  VL   G
Sbjct: 348 -----AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKG 397

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-----IDKIS 534
           +  +    D M+ +Y+L+      ++  +A K+L Y      +    S P        + 
Sbjct: 398 VEPVPPHFDTMIAAYLLEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFADVP 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   ++ E++++  +L+ +L  KL    L +V+ +++ P++ V+++ME+ G+ +D + 
Sbjct: 458 VEKAANYSCEDADITYRLYKILSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEF 517

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           LK++S E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG + T 
Sbjct: 518 LKKLSEEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTR 577

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++  G++ II  ILE+R++ K+KSTY D+LP  +N +T R+H  ++   T TGRL
Sbjct: 578 IEVLEEL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRL 636

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE
Sbjct: 637 SSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFE 696

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +D+H + A+ IF V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L +P  EA   I
Sbjct: 697 EGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMI 756

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + +YI++  +  ++ GYV T+FGR+    ++ +   + +   ER AIN PI
Sbjct: 757 VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPI 816

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI + + L++ K+ +KM++Q+HDELVFEVP+EE     +++   M    
Sbjct: 817 QGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEEKDALVELVKDRMTNV- 875

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              + L VPL+V++ +   W
Sbjct: 876 ---VKLSVPLEVDVTIGKTW 892


>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 948

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/1006 (30%), Positives = 500/1006 (49%), Gaps = 93/1006 (9%)

Query: 5   NHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L+L+D  + IYRA+YA          G   +A+ GF + L  ++   R +    + AV
Sbjct: 2   PTLYLLDAYALIYRAYYAFINRPLVDAQGRDTSALYGFASTLQDIIDKERPD----YIAV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D P  TFR++ YP+YKANRP+ PE +   +P ++   QA+ IP + ++G+EADD+I T
Sbjct: 58  AMDMPGGTFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178
            +  A + G+ V +++ DKD  QLV P   ++   +     E +  E +  K+GI  P +
Sbjct: 118 LSRQAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYGIRYPLQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+    L GDS DN+PG PGIG   A  LL+E+  +E+I     ++K     + +L   E
Sbjct: 178 MIDYLGLVGDSSDNVPGCPGIGKVAAQRLLEEFDTIEDIYARIDQVKP-TYAKKLLAAKE 236

Query: 239 TARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              LSR LV + TDVP +T   + +     +   +    K   FT L+ R+         
Sbjct: 237 QTMLSRHLVTIVTDVPGVTFDPDQMKWRGPDHAAVERIFKEFAFTSLLKRIGK------- 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                    ++T +   F      T   +         +     
Sbjct: 290 -----------------------PAESTPQVGLFDLGGSSTPASSPATIEVTGPVSAAAP 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +  Y     ++T++   + + Q  ++L      +F   TD +DA  +  + +++   +Q 
Sbjct: 327 MENYKTVGVTFTEVQGYEAVSQLAKQLAGSSVVAFDTETDGLDALCAGIVGMSLCADEQ- 385

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +  FI L     +           ILS LK   ++E  LK+ HN K+D  VL 
Sbjct: 386 -------QAYFIPLPESAEE--------AAHILSPLKDLMQDERVLKVAHNAKFDLEVLT 430

Query: 478 RYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIA---QKWLSYTRKEILKSRKSSIPIDKI 533
           RYG+       D ML  Y++D+ +  H +  +A    ++ +   K++      ++  D +
Sbjct: 431 RYGLPEAHPLYDTMLAHYLIDADQG-HSLDELAGGLLRYDTIRYKDLAPQESFALRTD-V 488

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               + ++A E++ V L+L+  L  +L   +   +   ++ P++ V+  ME  GI +D +
Sbjct: 489 DPKLLCDYASEDAYVTLRLYHALHKQLSPTEQ-RLLTEVEIPLLYVLMHMEQRGIVLDIE 547

Query: 594 LLKQVSAEISKNLLSLEENI--YDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQW 650
            L++   E+ +++L LE+ I  Y   G    ++SPKQ+G++LF +LK      KTKTG +
Sbjct: 548 ALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKTGNY 607

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L  +    +P++  IL++R+  K+ +TY D LP       + +HT Y+ A T T
Sbjct: 608 VTNEETLLPLRSL-HPVVALILDYREARKLLNTYIDPLPKMCYPDGK-LHTSYNQAVTAT 665

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPP--------------------TKKLISADY 750
           GRL+S  PNLQNIPI++DLG+ +RRAF++ P                       L+SADY
Sbjct: 666 GRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPIGAVLLSADY 725

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQ+ELR++AH+++   +   F +  DIH   AA++F V  E+V+P MR  AKT NF I Y
Sbjct: 726 SQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GI+P+ L+ +L IP  EAA+ IK YF  F  I  ++ K      + GY ET FGRR    
Sbjct: 786 GITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNKAIALATERGYTETAFGRRRQLR 845

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            + + + + R   ER AINAPIQG+AADI + AMI V + L   +L + ++LQ+HDELV 
Sbjct: 846 NLRTARGAQRGNEERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVL 905

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            V  +E+   + ++  +ME A        +PL V I    +W   +
Sbjct: 906 NVYLDELDRVTALVREAMEGAWPEC---SIPLVVEIGTGKDWLAAH 948


>gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
          Length = 892

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/987 (33%), Positives = 518/987 (52%), Gaps = 113/987 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +++N L L+DG+S  +RAF+A          H+GL  NAI GF NML  +L         
Sbjct: 3   EEKNKLLLIDGNSVTFRAFFALHNSLSRFVNHEGLHTNAIYGFKNMLDSILTKVN----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  V FD    TFR E + DYK  R K P  L  Q P ++   + + I   E++ +EAD
Sbjct: 59  THILVAFDAGKTTFRTEKFTDYKGGRAKTPSELSEQFPEIKNLLEGYRIKTYELKNYEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           DII T    AEK+ + V +++ D+DL QL +    +  TVK     E+    HV +K G+
Sbjct: 119 DIIGTLAAKAEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIGL 178

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE++V ++AL GD+ DN PG+  IG KTA  LL++YG L+ I  N   +K+ K +EN++
Sbjct: 179 IPEQIVDMKALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENLI 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E A L + L  +R D P                                        
Sbjct: 239 REKEIAYLCQDLAEIRKDAP---------------------------------------- 258

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                  V +D+  TE  G  IE  +     +   +F       S++ +E + Q    E 
Sbjct: 259 -------VEIDLEETEWTGKNIEKLVTLYQKLDFRKF------LSQLKAESSEQLDIFES 305

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
              +    +  ++   I N  D  + V          F +  D  +   ++ I  +I   
Sbjct: 306 KSNIEFTELTEENLDDI-NVSDNDEIV----------FNLEIDGENYHTAEIIGFSIKIG 354

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           D+                      S   + L K     +K   E++       + K   +
Sbjct: 355 DK-------------------YLVSDDIDLLKK---KQIKNLLESDEVEVDLFDGKRQYV 392

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIP 529
            L+R G+++     D++L+SY+LD+  +S+D+  +AQ+   Y  +       K  K ++P
Sbjct: 393 GLNRLGVTLSKINFDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDEQIYGKGAKHAVP 452

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            DK     + EH +     I  L   L  +L   + L +Y ++++P+  V++ MEI G++
Sbjct: 453 KDK---EVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIVLANMEIAGVK 509

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D + L+ + +E+ + L  LE+ IY+ +GE+FNL+SPKQLG ILF KLK P   KTKTG 
Sbjct: 510 VDSNRLETMQSELKERLSELEQEIYNEAGEEFNLNSPKQLGVILFEKLKLPVIKKTKTGY 569

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +TA  + +   G +PI+ NIL++RQL+KI+STY + L   ++K+  + HT Y+   T 
Sbjct: 570 --STAVGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYTQTLTS 627

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PNLQNIP++ + G+KIR+AF+   P  ++ S+DYSQIELR+LAHI+K   + 
Sbjct: 628 TGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQ 687

Query: 769 QVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           + F+  +DIH   A  IF V+  ++V+P MRR AK +NF I+YGIS + L+  + I R +
Sbjct: 688 EAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQ 747

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +I  Y   F G+ +Y+EK   F ++NGYVETIF RR +  +I S   ++R+  ER A
Sbjct: 748 AKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTA 807

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N+PIQGSAADI + AMI++ + L++  L  KMLLQ+HDEL+FE P +EI     ++   
Sbjct: 808 MNSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDELIFEAPTKEIPLLEDMVPKV 867

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+ A    + L VPLKV  K    W +
Sbjct: 868 MDSA----VKLDVPLKVESKHGQTWFD 890


>gi|332638560|ref|ZP_08417423.1| DNA polymerase I [Weissella cibaria KACC 11862]
          Length = 904

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/990 (31%), Positives = 498/990 (50%), Gaps = 102/990 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   L L+DG+S  +RAF+A          H+GL  NA+ GF N+L  ++   + +  
Sbjct: 1   MAK-PTLLLIDGNSLAFRAFFALINQVDRFVNHEGLHTNALVGFNNLLDGIVDPFKPDL- 58

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V +D    TFR   + DYK NR K P+ L+ Q   +R   +  GI + E+ G+EA
Sbjct: 59  ---ALVAWDAGKTTFRTGKFDDYKGNRDKTPQELVEQFEPLRKMVELHGIKSYELPGYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T   + E  G+AVTI++ D+D+ QLV+    ++ T K     +      V + + 
Sbjct: 116 DDIIGTTARMGEAAGYAVTIVTGDRDMTQLVTDDVSVWVTKKGISEIDHYTPAMVAEVYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P ++V ++ L GD+ DN PG+ GIG KTA  L++EY  +  +      +K  K++E 
Sbjct: 176 GLTPAQIVEVKGLQGDTSDNYPGVAGIGPKTAIKLMKEYHTIPEMYERIDEMKTSKQKEK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   E A LSR L  +RT+ P+   L  L     +   +I F + L+F   + ++A   
Sbjct: 236 LIAGKEDALLSRDLATIRTNAPVDYDLSSLTYNGPDYEAIIPFYQHLDFKAQLVKLAN-- 293

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                                          T    +   +  D     +   TP ++  
Sbjct: 294 ----------------------------QGHTIPAPTGMQNGDDGEPAHDMNNTPLEVRS 325

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                L+                     +++L      SF +  D  +   + P+   I 
Sbjct: 326 LTATNLTH--------------------IEQL--GDEISFYLELDDENYHTANPVGFVIG 363

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             +     S  +E +     V+                    +  ++    K   N K  
Sbjct: 364 NNEHGYFVSRDIELLVQGTPVN--------------------RILQDATVKKNVFNAKGT 403

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSS 527
            + L R G+++     D++L++Y+LD+  +++D+ ++A +   Y      +   K  K +
Sbjct: 404 IVALRRLGLTLPNVAFDLLLVAYLLDANDNNNDMGALAHENGYYAVRTDEEVYGKGAKFA 463

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP    +D  + EH    +  I  L   L  KL   +   +Y+ ++ P+  V++ ME TG
Sbjct: 464 IPE---ADEDLFEHLGRKAMAIQYLKDPLMAKLTEHEQTQLYDDIELPLTYVLADMEATG 520

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I +D + L ++ +++++ L  LE+ IY  +G +FN+ SPKQLG +LF ++ +    KTKT
Sbjct: 521 ITVDANTLLEMRSKLTERLAELEQTIYQQAGHEFNVQSPKQLGVVLFEEMGYTPIKKTKT 580

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T+ + LEQ+  GD P++ +IL +RQ++KI+STY + L   I+    +VHT Y    
Sbjct: 581 G-YSTSVEVLEQM--GDVPLVASILAYRQIAKIQSTYVEGLLRVIHGSDSKVHTRYLQTL 637

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++ + G++IR+AF+      +++SADYSQIELR+LAHI     
Sbjct: 638 TQTGRLSSVDPNLQNIPVRIEEGRRIRKAFVPREKGWRILSADYSQIELRVLAHITGDKH 697

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F N  DIH   A  IFG+  ++ V   +RR AK +NF I+YGIS F LA  + + R
Sbjct: 698 LQEAFINGEDIHAATARRIFGIGPDETVDGNIRRQAKAVNFGIVYGISDFGLAKNIGVSR 757

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            +A   I  YF ++PG+  + E+     R+ GYVETI  RR +  +I +   ++R+  ER
Sbjct: 758 KQAKQIIDTYFEQYPGVKTWSEEIIAAAREQGYVETIAHRRRYLPDIKAKNFNLRSFAER 817

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AMI++ K+L D  L  KMLLQ+HDEL+FE PE E+    +++ 
Sbjct: 818 TAMNSPIQGSAADIIKIAMINMEKALRDAGLQAKMLLQVHDELIFEAPESELPILHELVP 877

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             M+ A      L VPL V       W + 
Sbjct: 878 RVMDSAM----QLDVPLIVASHEGETWYDA 903


>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
          Length = 879

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/985 (31%), Positives = 502/985 (50%), Gaps = 117/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS +  G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E+  +EADDI
Sbjct: 56  MLVAFDAGKTTFRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYNISRYELPEYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V + S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAVSAEKDGFEVKVFSGDKDLTQLATGKTTVAITRKGITDVEDYTPEHVEEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  K         
Sbjct: 176 LQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHSVEKLLDSIDEVSGK--------- 226

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L   +   L+++   T   +A
Sbjct: 227 ----------------------------------KLKEKLGEYKEQALMSKELATIMTNA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + +   + +G   E  +     +  +       + S   +E+  + + +E ++
Sbjct: 253 ----PIEVKLEDLDYQGFDREQVVAIFKDLGFNTLLERLGEESGETAEEDFEDIDVETVE 308

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           ++++  + + S                       +  +     +      +  +I   + 
Sbjct: 309 EITEDMLVSPS-----------------------ALVVEQIGDNYHEEPILGFSI-VNET 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 K   I                          K + E+E   K   + K   + L
Sbjct: 345 GLYYIPKETAIQS---------------------EAFKSWAEDESKKKWVFDSKRSVVAL 383

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE---ILKSRKSSIPID 531
              GI ++G   D +L +Y+++ G S  D+AS+A+++ L+   K+     K  K ++P +
Sbjct: 384 RWQGIELKGTEFDALLAAYIINPGNSYDDVASVAKEYGLNIVSKDEAVYGKGAKHAVPAE 443

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K    ++ +H    +  +  L   L   L     L +YE L+ P+  ++ +ME  G+++D
Sbjct: 444 K----ELADHLARKAAAVNSLRDKLLHALKENNQLELYEDLELPLALILGEMESMGVKVD 499

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + LK++  E+   L   EE I+D++GE FN++SPKQLG ILF KL  P   KTKTG   
Sbjct: 500 VERLKRMGEELRAKLKEYEEKIHDIAGEPFNINSPKQLGVILFDKLGLPVVKKTKTGY-- 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I+  IL++RQ+ K++STY + L     K + +VHT ++ A T TG
Sbjct: 558 STSADVLEKLADKHDIVAYILQYRQIGKLQSTYIEGLLKVTRKDSHKVHTRFNQALTQTG 617

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHI+K   L + 
Sbjct: 618 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEA 677

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N +DIH   A ++F V+ ++V+  MRR AK +NF I+YGIS + L+  L I R EA  
Sbjct: 678 FTNDMDIHTKTAMDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGA 737

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RY   FPG+  Y+E++    +Q GYV T+  RR +  E+ S   ++R+  ER A+N 
Sbjct: 738 FIDRYLESFPGVKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNT 797

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++  L  ++LLQ+HDEL+FE P+EEI    +++   ME 
Sbjct: 798 PIQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIKILEKLVPEVMEH 857

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    ++L VPLK +     +W + 
Sbjct: 858 A----LDLDVPLKADYASGPSWYDA 878


>gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797]
 gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797]
          Length = 900

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/978 (31%), Positives = 507/978 (51%), Gaps = 91/978 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L+++D  S +++ F+A P ++    G P NAI G    +  +++    +    +   
Sbjct: 2   KETLYIIDTFSLVFQVFHAVPAMT-GPTGQPTNAIFGITRDILNIIKTHSPD----YLIF 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D      RN++Y +YKANR  +PE L+PQ+P +    + F +P IE  G+EADD+ AT
Sbjct: 57  AMDSSGPGTRNDLYSEYKANRSAMPEDLVPQIPHIMDVVKGFQVPVIECPGWEADDVFAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              +A ++G   TI++ DKD  QL++ +  LY+  K + +D E V   WG+ P++++  Q
Sbjct: 117 IARLANEKGIETTIVTNDKDARQLINDSIRLYNIRKNQFMDAEAVQADWGVRPDQVIDFQ 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           +L GDS+DNIPG+P +G K A  L++++G LE +L NA + K  K ++N           
Sbjct: 177 SLVGDSVDNIPGVPLVGPKKAQTLIEQFGTLEGVLANADKAKGPKLQQN----------- 225

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                                           LK       ++R   T +      + + 
Sbjct: 226 --------------------------------LKEFADQARMSRELVTLN------QSLD 247

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L+IN   ++    + E      +         D    +++E  P+ +   R         
Sbjct: 248 LNINWEASRLTHPDRERLHQLFVDFGFRRFAEDMKEVLSTEAPPEPVERIR--------- 298

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                  I      + ++  L+        + T  +    ++ +  AIS    +      
Sbjct: 299 -----ETIDTKPAFETFLALLKEQDEFCVDLETTGLKPAEAEIVGWAISWEKHRG----- 348

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +I +   + Q +         +L +LK   E+   L    NIKYD +VL R G+ +
Sbjct: 349 ---FYIPVEGPSGQLALDPQY----VLEHLKPILEDPEILITNQNIKYDMVVLMRVGVFL 401

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539
           +G   D M+ SY++ +G   H +  +++++L++T     E++ S K    + ++   +V 
Sbjct: 402 QGVSIDPMVASYLISAGERGHSLDKLSERYLNHTMIPISELIGSGKQQKKMFEVDVDKVA 461

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E+A+E++ +  QL  +L+ +L    L  +Y  L++P+I ++++ME TGI++D   LKQ S
Sbjct: 462 EYAVEDAEIAWQLSRILQDELKHAGLWELYWELERPLISILAEMEFTGIKVDTAELKQQS 521

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
             + K L +L   I++++G +FN++SP QL  +LF +L  P   KTKTG   +T Q + +
Sbjct: 522 QLLEKRLTTLISEIHEIAGHEFNIASPLQLRTVLFEELNLPVFKKTKTG--PSTDQSVLE 579

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + +   I E R LSK+KSTY D+LP  +N  T R+H  ++     TGRL+S +PN
Sbjct: 580 KLAPLHALPARITEHRHLSKLKSTYLDALPGLVNPETGRIHASFNQVVAATGRLSSSDPN 639

Query: 720 LQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++T  G++IR+AFI      +L+ ADYSQIELRILAH+++   L Q F    DIH
Sbjct: 640 LQNIPVRTQEGRQIRKAFIPQDENWRLLCADYSQIELRILAHLSQDVALSQAFREGADIH 699

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             VA++IF V  ++V   MRR AK +NF +IYG SPF L+  + IP+SEAA +I+ YF R
Sbjct: 700 TAVASDIFRVPHDQVDSDMRRTAKAVNFGVIYGQSPFGLSEAIGIPQSEAAGFIEDYFVR 759

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           + G+ E++++      +  +VETI GR+     +        N+ ER AIN  IQGSAAD
Sbjct: 760 YQGVREFLDQILEDCAKQKFVETICGRKREIQGVRGGVQKQLNMPERTAINTVIQGSAAD 819

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + ++AM++V   ++  +   +ML+QIHDELVFEVP   + T   I+   ME A     +L
Sbjct: 820 LIKQAMLNVSDRIKQEQHPGRMLMQIHDELVFEVPLTALDTLGLIVREEMESAM----DL 875

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V++    NW E+N
Sbjct: 876 EVPLIVDMSSGLNWLEQN 893


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/1010 (30%), Positives = 498/1010 (49%), Gaps = 89/1010 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L+DG S  +R++YA         R   G+P +   GF N L +++++ + E    + A
Sbjct: 10  LILIDGHSLAFRSYYAFAKARKGPLRTSKGIPTSVCFGFLNSLMQVIESQKPE----YLA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E   +YKA+R + PE  +  +  ++   +A  +  +   G+EADD++ 
Sbjct: 66  IAFDRSEPTFRHEADENYKADREETPEDFIIDMANLQELLEALNLTIVTFPGYEADDVLG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP-----------TTCLYDTVKEEKIDIEHVIKK 171
           T      + G+ V I+S D+DL QLV                   +    + + E V  K
Sbjct: 126 TLANQGSESGYQVKIVSGDRDLFQLVDEAKNISVLYLERNAVKGSSEGYTEFNSEAVEAK 185

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P ++V  +AL GD  D+IPGI GIG KTA  LL+EYG ++ +  N  +IK     +
Sbjct: 186 LGIKPVQVVDYKALCGDKSDSIPGIDGIGEKTAVKLLKEYGTIQEVYNNLDKIKG-TLNK 244

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + +  + A  S+ L  +  DVP+ I  ++  L+  N   L   L+ LE  K + ++   
Sbjct: 245 KLKDGVKEAEHSQYLAKIVVDVPVDIDFKNCQLKGFNLSILEPLLQKLELNKFLKQINHL 304

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                  ++PV    +               D   + S F            EQ      
Sbjct: 305 QQKFGGEVKPVDQATSQP------------LDHPQQLSLFP-----------EQNLPAHS 341

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA----SFKIITDTMDAFHSKPI 407
           +E L   +   ++  +   I    D+   + KLE         ++   T +++  +++ +
Sbjct: 342 VEPLVIKTIPEVSPITPKIITTLDDLNHLINKLEQYTDVEYPVAWDTETTSLEPRNAELV 401

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            I     ++  D +      +I    +      G     + +L  LK   E++ + K+  
Sbjct: 402 GIGCCWGEKSTDIA------YIPTGHNK-----GNQLKKEAVLQALKPILESDRYPKVFQ 450

Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK- 525
           N K+D+L+ +  GI+++G   D +L SYVL     SH+++ +  ++LS    +  K    
Sbjct: 451 NTKFDRLIFYHQGINLKGVVFDTLLASYVLHP-EMSHNLSDLCYRYLSGITSQSYKELAI 509

Query: 526 -SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQM 583
                I  +    V  +   ++     L   L+ +L     L  +   +++P+  V++ M
Sbjct: 510 PKGKTIASLDIETVANYCGLDAYATFLLVSKLKQELKSFPSLEKLLLEVEQPLEPVLAAM 569

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  GI+ID D L+Q+S ++ ++L  +E+  Y  +GE FNL SPKQLG+ILF KL+     
Sbjct: 570 EDIGIRIDTDYLQQLSQQLEQDLHIIEQQAYQEAGEIFNLGSPKQLGEILFEKLELNRKK 629

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
             KT    +T     +   GD+PII +IL++R LSK+KSTY D+LP  +   TQRVHT +
Sbjct: 630 SRKTKTGYSTDHATLEKLQGDHPIIDHILDYRTLSKLKSTYVDALPALVRPDTQRVHTNF 689

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           +   T TGRL+S  PNLQNIPI+T+  +KIR+AFI      L+SADYSQIELRILAH+++
Sbjct: 690 NQTVTATGRLSSSNPNLQNIPIRTEFSRKIRQAFIPQENWLLVSADYSQIELRILAHLSQ 749

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + + N+ D+H + A  +F  + E ++PQ R   KTINF +IYG+   R A +  +
Sbjct: 750 EVVLLEAYRNNQDVHSVTAKLLF--DKETITPQERNLGKTINFGVIYGMGAQRFAREAGV 807

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
             +E   +I +Y  R+  + +Y+E+ K     +G+V TI GRR +++ I      ++  +
Sbjct: 808 SAAEGKTFINKYRQRYAKVFDYLERMKKEAIADGFVTTILGRRRYFNFITESLQKLKGSD 867

Query: 884 E------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
                              RAA NAPIQGS+ADI + AMI + + L       ++LLQ+H
Sbjct: 868 PEKINLEVLNINYADAQLLRAAANAPIQGSSADIIKIAMIKMQEIL--SHYQARLLLQVH 925

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           DELVFE+P  E       I  +ME A    + L VPL V I   NNW E 
Sbjct: 926 DELVFEIPLNEWEELQTKIKETMENA----VTLTVPLVVEIHSGNNWMEA 971


>gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413]
 gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413]
          Length = 977

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1013 (30%), Positives = 496/1013 (48%), Gaps = 93/1013 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
                LVDG S  +R+++A         R   G+P +   GF   L +++   + ++   
Sbjct: 14  RPTFILVDGHSLAFRSYFAFAKGRDGGLRTKTGIPTSVCFGFLKSLLEVMATQQPQA--- 70

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             A+ FD    TFR+E    YKA+RP  PE  +P L  +    + F +P     G+EADD
Sbjct: 71  -MAIAFDLGLPTFRHEADDTYKADRPGTPEDFVPDLKNLHELLEGFNLPIYTAPGYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP-----------TTCLYDTVKEEKIDIEHV 168
           ++ T    A  EG+ V I++ D+DL QLV P                 T    ++  E V
Sbjct: 130 VLGTLAQKATAEGYKVKILTGDRDLFQLVDPEKEITVLNFSPDALKRSTNSITEVSTEQV 189

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            ++ G+ P ++V  +AL GD  DNIPG+ GIG KTA  LL  YG+L+ +    + IK   
Sbjct: 190 KERLGVLPTQVVDFKALCGDKSDNIPGVRGIGEKTAVQLLSTYGSLDGVYKALNEIKGAT 249

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            ++ + E  E A  S+ L  +  DVP+ + LE   L   +   LI  L+ LEFT+ ++++
Sbjct: 250 -QKKLAEGKEDAAKSQFLAKIVVDVPLEVNLEDCKLVGFDESLLIPILEKLEFTRFLSQI 308

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                                   G  +E E      I+T++F    D  +   +E+T  
Sbjct: 309 NDL----------------QRRFGGTVVEVEKTEVAAIETTKFE--DDDIAFYTAEETQA 350

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHS 404
               +    +    IN            + + VQ L+   +     ++   T  ++   +
Sbjct: 351 IQQNQPASPIQPRIIN--------TEAKLIELVQILQQFTNPETPVAWDTETSGLEPRDA 402

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
             + I      + D ++      +I L+      + G+N     +L+ L+   E+  + K
Sbjct: 403 ALVGIGCCWGTEADASA------YIPLAH-----TKGENLSQDIVLTALRPILESADYPK 451

Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
              N K+D+LV    GI++ G   D ML SYVL+   +SH++  + Q++L  T +  +  
Sbjct: 452 TFQNAKFDRLVFLVQGINLTGVVFDPMLASYVLNPD-TSHNLTDLTQRYLGLTIQNYVDL 510

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQ 582
                 I  I+ S V  +         QL   LR +L     L  +   +++P+  V++ 
Sbjct: 511 VPKGKTIADINISAVANYCCLQVYATFQLVAKLREELAKTPNLDKLLREVEQPLESVLAT 570

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--P 640
           +E TG++ID   L ++S ++  +L  L+E   +L+GEKFNL SPKQL  ILF KL     
Sbjct: 571 VEYTGVRIDSAYLHELSQQLEIDLAKLQEQATELAGEKFNLGSPKQLSYILFEKLGLSTK 630

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              K +TG     A   +     +   +  I E+R LSK+KSTY D+LP  +   TQRVH
Sbjct: 631 YSRKIQTGYSTDAATLEKLQEVDETGFVNAITEYRTLSKLKSTYVDALPALVRPDTQRVH 690

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T ++  +T TGRL+S  PNLQNIPI+T   ++IR+AF+      + +ADYSQIELRILAH
Sbjct: 691 TDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPKSGWLMAAADYSQIELRILAH 750

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L Q ++ + DIH + A  +F    + ++   RR AKTINF +IYG+   + +  
Sbjct: 751 LSQEPLLVQAYQQNEDIHTVTAKLVF--EKDDINSDERRIAKTINFGVIYGMGSLKFSRS 808

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             I ++ A ++IKR+  R+  I  Y+E  K      GYVETI GRR +++  ++   +++
Sbjct: 809 TGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGRRRYFNFDSTSLLNLK 868

Query: 881 NINE-------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
             N                    R+A NAPIQGS+ADI + AM+ +H+ L+  K   ++L
Sbjct: 869 GSNPEDIDLSKLKNLGAKDAGLLRSAANAPIQGSSADIIKIAMVQIHEVLK--KYQARLL 926

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDELVFEVP +E       I   ME A    + L VPL V+++   NW E
Sbjct: 927 LQVHDELVFEVPPQEWAELQPQIKSVMENA----VKLSVPLVVDVRAGENWME 975


>gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
 gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
          Length = 892

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/987 (34%), Positives = 518/987 (52%), Gaps = 113/987 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +++N L L+DG+S  +RAF+A          H+GL  NAI GF NML  +L         
Sbjct: 3   EEKNKLLLIDGNSVTFRAFFALHNSLSRFVNHEGLHTNAIYGFKNMLDSILTKVN----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  V FD    TFR E + DYK  R K P  L  Q P ++   + +GI   E++ +EAD
Sbjct: 59  THILVAFDAGKTTFRTEKFTDYKGGRAKTPSELSEQFPEIKNLLEGYGIKTYELKNYEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           DII T    AEK+ + V +++ D+DL QL +    +  TVK     E+    HV +K G+
Sbjct: 119 DIIGTLAAKAEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIGL 178

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE++V ++AL GD+ DN PG+  IG KTA  LL++YG L+ I  N   +K+ K +EN++
Sbjct: 179 IPEQIVDMKALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENLI 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E A L + L  +R D P                                        
Sbjct: 239 REKEIAYLCQDLAEIRKDAP---------------------------------------- 258

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                  V +D+  TE  G  IE  I     +   +F       S++  E + Q    E 
Sbjct: 259 -------VEIDLEETEWTGKDIEKLITLYQKLDFRKF------LSQLKDESSEQLDIFES 305

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
              +    +  ++   I N  D  + V          F +  D  +   ++ I  +I   
Sbjct: 306 KSNIEFTELTEENLDDI-NVSDNDEIV----------FNLEIDGENYHTAEIIGFSIKID 354

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           D+                      S   + L K     +K   E++       + K   +
Sbjct: 355 DK-------------------YLVSDDIDLLKK---KQIKNLLESDEVEVDLFDGKRQYV 392

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIP 529
            L+R G+++     D++L+SY+LD+  +S+D+  +AQ+   Y  +       K  K ++P
Sbjct: 393 GLNRLGVTLSKINFDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDEQIYGKGAKHAVP 452

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            DK     + EH +     I  L   L  +L   + L +Y ++++P+  V++ MEI G++
Sbjct: 453 KDK---EVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIVLANMEIAGVK 509

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D + L+ + +E+ + L  LE+ IY+ +GE+FNL+SPKQLG ILF KLK P   KTKTG 
Sbjct: 510 VDSNRLETMQSELKERLSELEQEIYNEAGEEFNLNSPKQLGVILFEKLKLPVIKKTKTGY 569

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +TA  + +   G +PI+ NIL++RQL+KI+STY + L   ++K+  + HT Y+   T 
Sbjct: 570 --STAVGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYTQTLTS 627

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PNLQNIP++ + G+KIR+AF+   P  ++ S+DYSQIELR+LAHI+K   + 
Sbjct: 628 TGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQ 687

Query: 769 QVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           + F+  +DIH   A  IF V+  ++V+P MRR AK +NF I+YGIS + L+  + I R +
Sbjct: 688 EAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQ 747

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +I  Y   F G+ +Y+EK   F ++NGYVETIF RR +  +I S   ++R+  ER A
Sbjct: 748 AKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTA 807

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N+PIQGSAADI + AMI++ + L++  L  KMLLQ+HDEL+FE P EEI     ++   
Sbjct: 808 MNSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKV 867

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+ A    + L VPLKV  K    W +
Sbjct: 868 MDSA----VKLDVPLKVESKHGQTWFD 890


>gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313]
          Length = 894

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/985 (32%), Positives = 507/985 (51%), Gaps = 104/985 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+  L  +DG+S + RAFY  P L    DG+  N I  F N++ K ++    E    +
Sbjct: 1   MSKQ-KLMAIDGNSILNRAFYGLPELLTTSDGIYTNGIYVFLNIMHKFIEEENPE----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A TFR+  Y  YKANR  +PE L  Q+PL++    A  I  +E++GFEADDI
Sbjct: 56  ICVAFDLKAPTFRHNKYEGYKANRKGMPEELRVQVPLLKEVLDAMNIKRLEMEGFEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGI 174
           + + +  AEK+G  V +++ D+D  QL+ P+T L            E+ D   +++ +GI
Sbjct: 116 LGSVSLCAEKKGLEVILVTGDRDAFQLIGPSTRLKLPRTRGGKTEVEEYDYNKIVEVYGI 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+ V ++AL GD+ DNIPG+PGIG KTA  L++EY NLEN+  +   IK+K  RE   
Sbjct: 176 KPEQFVDVKALAGDTSDNIPGVPGIGEKTALALIKEYNNLENLYNSLDSIKKKGLRE--- 232

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                     KL   +    ++     L L + N P L                     C
Sbjct: 233 ----------KLETFKEQAFLSR---ELALIERNMPSL---------------------C 258

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D   ++ V +D   T                 K  +F S  D+                 
Sbjct: 259 DIEELKRVEIDREKT-------------YEIFKRLEFRSFIDKFG--------------- 290

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L  +        +     N  +++     +          + D   +F  K  AIAIS +
Sbjct: 291 LNDVQIQNTVELNVKIAKNASELESLKNNILKSRKVCIYHLIDKTGSFSQKLAAIAISPV 350

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           + +          ++D + +  +D         E     K   E+ +  K GH++K   +
Sbjct: 351 EDE--------AWYLDFTNNIDED---------EFFRQFKDVLEDGNIKKYGHDLKNFIV 393

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
            L+  GI   G   D M+ +Y+++  + ++ I+ +AQ++L+ +    +E+    KS    
Sbjct: 394 YLNNRGIDFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSVKAVEELAGKGKSFTLF 453

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    + +      +VI ++   +   L       +Y  ++ P++  ++ ME  G ++
Sbjct: 454 KDMQPDVLSKTVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADMEYYGFKV 513

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           + D L + S E+ + +  + + IY L+GE+FN++SPKQLG ILF KL  P   KTKTG +
Sbjct: 514 NVDALVEFSKELQEKIDVVTKEIYTLAGEEFNINSPKQLGVILFEKLGLPIIKKTKTG-Y 572

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A+ LE+++   + I++ ILE+RQL K+KSTYA+ L   IN  T ++H+ ++   T T
Sbjct: 573 STDAEVLEELS-DRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFNQTVTAT 631

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GR++S EPNLQNIPIK ++G+KIR+ FI       L+ ADYSQIELR+LAHI     +  
Sbjct: 632 GRISSTEPNLQNIPIKLEMGRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMIN 691

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N+ DIH   AA +FG+  E+V+P MR  AK +NF I+YGI  F LA  L+I R EA 
Sbjct: 692 AFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNFGIVYGIGDFSLAKDLKISRKEAR 751

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI  Y  R+P + +Y+       ++ G+V T+F RR +  E+ S   +IR+  ER A+N
Sbjct: 752 AYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRRRYLPELKSRNFNIRSFGERVAMN 811

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQGSAADI + AM+ VH  L+  KL ++++LQ+HDEL+ E  ++E     +I++  M+
Sbjct: 812 TPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILLEGMQ 871

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A    ++L+VPL V IK  +NW E
Sbjct: 872 NA----VSLKVPLVVEIKSGSNWYE 892


>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
 gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
          Length = 892

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/980 (32%), Positives = 517/980 (52%), Gaps = 102/980 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG+   YRA+YA         G+P NA  G   ML + L++  K  I  + A   
Sbjct: 3   KLFLFDGTGLAYRAYYALDQSLSTTSGIPTNATYGVLRMLIRFLKDYVK--IGDYTAFAM 60

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E+  +YKA+RP+ P+ ++ QLP ++   QA GI  +E +G EADD+IAT  
Sbjct: 61  DTKTRTYRHELLEEYKAHRPQTPDAMIQQLPYIKRGVQALGIKVLEYEGCEADDVIATLA 120

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            + EKE   + IIS DKD+ QLV+    ++   K     E  D + +I+K+ + P K+V 
Sbjct: 121 RMGEKEFEDIFIISGDKDMFQLVNDKIKVWRPSKGITDLEFYDKKKIIEKYRVEPSKIVD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL GDS+DN+PG+ GIG KTAA L++++GNL+ I                    E +R
Sbjct: 181 LLALMGDSVDNVPGVKGIGMKTAAELIEKFGNLDEIYGKID---------------ENSR 225

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           + + L   + D                  +L++ +  L+     + +      +   +E 
Sbjct: 226 IGKLLSRGKDDA-------------FKSKQLVTLMTDLDLRLTWDDLKYAGYKEKELVEF 272

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
               +   E   I  E  +      KT                                 
Sbjct: 273 ----LREMEFSSIMKELGLYTQQDQKTP-------------------------------- 296

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  + +   + +  +K++        + TD++    ++ I  +IS   ++    
Sbjct: 297 ------YIAVKDNNSLNELFEKIKKSQYFVLDLETDSLSPIDAEIIGFSISLPSKES--- 347

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 ++ L+        G N   K  L+ LK   EN+    IG N+KYD  VL  +GI
Sbjct: 348 -----YYVPLAHK-----NGPNVDKKSALNNLKSILENQSAKIIGQNLKYDYSVLKMHGI 397

Query: 482 S-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRK---SSIPIDKIS 534
             +R   D M+ +Y+L+      ++  +A K+L+Y     +E+ K       ++    +S
Sbjct: 398 EPVRPSFDTMIAAYLLNPDEKRFNLDELAMKFLNYKMISFEELFKDTSPLFGAVTFADVS 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                +++ E++++  +L+ +L  KL    LL V E+++ P+I V+  ME+ G+ ++ D 
Sbjct: 458 VEDATKYSAEDADITRRLYEILNIKLHEADLLEVLEKIEMPLIPVLVHMELEGVYMNIDY 517

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK +S++ +  +  L + IY+ +GE FNL+SPKQ+  ILF KLK     KT TG+  T A
Sbjct: 518 LKDLSSKYAARMNELSQQIYNHAGEAFNLNSPKQVAHILFDKLKIQPTKKTSTGEPSTRA 577

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE+++  ++PI++ ILE+R+  KIKSTY D LP  ++  T R+H+ +    T TGRL+
Sbjct: 578 DVLEELS-EEHPIVRLILEYRKYQKIKSTYLDVLPKLVHPETGRIHSSFHQTGTATGRLS 636

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQN+P K +  ++IR+A +    + K++SADYSQIELR+LAH++    L + F+ 
Sbjct: 637 SSDPNLQNLPSKQEESREIRKAVVPQRDSWKILSADYSQIELRVLAHLSNDQNLIEAFKK 696

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   ++ IF V   +V+PQMR   K +NFS+IYG+SP+ L+ +  +   +A  +I 
Sbjct: 697 DEDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSPYGLSQRTGLSYDQAQKFIG 756

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P + EY  K  ++ + +GYV T+FGRR    ++ S  +S+R   ER AIN PIQ
Sbjct: 757 EYFSLYPSVKEYFAKIVSYAKTHGYVRTMFGRRREVPQLRSKNASVRQEGERIAINTPIQ 816

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI+++  ++  +L +KM+LQ+HDELVFEVP+EE+     ++  SME    
Sbjct: 817 GTAADIMKLAMINLYDKIKQMRLQSKMILQVHDELVFEVPDEEVEIVKNLVRDSMENV-- 874

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             + L VPLKV++K+S++W+
Sbjct: 875 --VRLSVPLKVDLKISDSWE 892


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/985 (32%), Positives = 506/985 (51%), Gaps = 119/985 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   +     +H
Sbjct: 1   MRLKKKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEQ----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R   + + IPA E+  +EADDI
Sbjct: 56  LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKTYRIPAYELYIYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V IIS D+DL QL S    +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKIISGDRDLTQLASRHVTVDITKKGITDIEPYTPETVREKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   +K           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             ++   L+      L+++   +   DA
Sbjct: 226 ---------------------------------EKVKEKLRQHRDLALLSKQLASICRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  I      K   F S  ++ +       P     + L+
Sbjct: 253 ----PVELSLDALVYEGQDREKVI---ALFKELGFQSFLEKMAA------PAAEGRKPLE 299

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           ++    ++  +   + +                A+  +     +   +  + IA+     
Sbjct: 300 EMEFAIVDVITEEMLAD---------------KAALVVEVMEENYHDAPIVGIAL----- 339

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         ++ H       +  L     S    +  +E   K   + K   + L
Sbjct: 340 --------------VNEHGRFFMRPETALAD---SQFLAWLADETKKKSMFDAKRAVVAL 382

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPID 531
              GI +RG   D++L +Y+L+  + + DIA++A+  ++ +    E    K  K S+P +
Sbjct: 383 KWKGIDVRGVAFDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAVYGKGVKRSLPDE 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +     + EH +  +  I  L       L   +   +  +L++P+  ++++ME TG+ +D
Sbjct: 443 Q----TLAEHLVRKAAAIWALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+Q+ +E+++ L ++E+ IY+ +G++FN++SPKQLG ILF KL+ P   KTKTG   
Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYEHAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY-- 556

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I++NIL +RQL K++STY + L   +   T +VHT ++   T TG
Sbjct: 557 STSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQTLTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA    L + 
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+  LDIH   A +IF V+ E+V+  MRR AK +NF I+YGIS + LA  L I R EAA+
Sbjct: 677 FQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++R+  ER A+N 
Sbjct: 737 FIERYFASFPGVRRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  ++LLQ+HDEL+ E P+EEI    +++   ME+
Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQ 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A        VPLKV+      W + 
Sbjct: 857 AVS-----SVPLKVDYHYGPTWYDA 876


>gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 772

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/828 (34%), Positives = 451/828 (54%), Gaps = 67/828 (8%)

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
              +  + V+ K+G+PPE ++   AL GDS DNIPG+PG+G KTA  LLQ  G L+ +  
Sbjct: 1   NTILGPDEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYA 60

Query: 220 NASRIKQ------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
              +I        K     + +  + A LS KL  ++TDV + +  E L ++      L+
Sbjct: 61  EPEKIAGLTFRGAKTMAGKLAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELL 120

Query: 274 SFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
              K  EF +    V       A   +P                                
Sbjct: 121 GLFKKYEFKRWTADVEAGKWLQAKGAKP-------------------------------- 148

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
                    + +  + + ++         ++ ++Y  I++   ++ W++KL+     +F 
Sbjct: 149 ---------AAKPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFD 199

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
             TD++D   +  + ++ +           V   ++D                +  L  L
Sbjct: 200 TETDSLDNIAANLVGLSFAIEPGV-AAYVPVAHDYLDAP---------DQISRQRALELL 249

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW 512
           K   E+E   K+G N+KYD+ VL  YGI +RG   D ML SY+L+S    HD+ S++ +W
Sbjct: 250 KPLLEDEKVRKVGQNLKYDRGVLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRW 309

Query: 513 LSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHV 568
           L +     ++I    K+ +  ++I+  +   +A E+++V LQL L + P+L   K  L+V
Sbjct: 310 LKHKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNV 369

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           +E ++ P++ V+S++E  G++ID  +L + S EI+  L  LE+  +D++GE FNLSS KQ
Sbjct: 370 FENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQ 429

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           L  ILF K       KT  G   T+ + LE++   D P+ K ILE+R L+K+KSTY D L
Sbjct: 430 LQTILFEKQGIKPLKKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKL 488

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  IN +T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SA
Sbjct: 489 PLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSA 548

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ ++ V+ + RR AK INF +
Sbjct: 549 DYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGL 608

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+S F L+ QL IPR EA  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++
Sbjct: 609 IYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLY 668

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +I S  ++ R   ERAAINAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDEL
Sbjct: 669 LPDIKSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDEL 728

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           VFEV ++++   ++ I   ME        + VPL V +    NW + +
Sbjct: 729 VFEVHKDDLDAVAKRIHQLMENCT----RIDVPLLVEVGSGENWDQAH 772


>gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555]
 gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016]
 gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555]
 gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 880

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/982 (32%), Positives = 506/982 (51%), Gaps = 112/982 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +E  L ++DG S + RAFYA P L+   +G   NA+ GF NML K+    +KE   SH
Sbjct: 1   MSRE-KLLILDGHSLMNRAFYALPDLTN-SEGTHTNAVYGFINMLLKM----KKEIEPSH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR++ Y +YKA R ++P  L  Q P+V+   +   I   EI GFEADD+
Sbjct: 55  IVCTFDRSAPTFRHDKYSEYKAGRKRMPPELSEQFPIVKEILELLSINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           + T +  AEK+G  V I++ D+D +QL + +  +  T K     E  D   +I  +G+ P
Sbjct: 115 MGTLSVFAEKKGMEVYIVTGDRDALQLATDSVKIVITKKGITQKEIYDRNKIIDDYGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++ L GD+ DNIPG+PGIG KTA  L++EY ++EN+L N   IK KK +EN+  Y
Sbjct: 175 TEFIDVKGLMGDASDNIPGVPGIGEKTALKLIKEYKSIENVLCNIDNIKGKKVQENLKNY 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A  S+KL  + TDVPI                       L+   + ++    Y+ + 
Sbjct: 235 MEQAVFSKKLATIVTDVPI----------------------ELDLQSIESK--EQYNAEG 270

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                         +  QF SL D+  K+  +    K+ +E  Q
Sbjct: 271 -------------------------LRKLFEKLQFKSLMDKIPKVEEQD---KIEVEDFQ 302

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         I     +  ++  LE                  +K + I    +D+
Sbjct: 303 VEC---------EVIDTLNKVHNFIDSLEAED-------------MKNKLLYINFKVVDE 340

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI--LSYLKKFFENEHFLKIGHNIKYDKL 474
                  ++ IFI++     +    +     +I  +   K  FEN    K+ +++K    
Sbjct: 341 NSYAKNYIDKIFINIGEKNFEIHIKEIYDENKIKAVETAKMLFENSSLSKVSYDVKVPCS 400

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +LHR GI + G   DI + +Y++D  R+++++  I +++L+    E              
Sbjct: 401 ILHRMGIKLLGIEFDIKIAAYLMDPARTNYELPDIIKEYLNIEISE-------------- 446

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              + ++  I+ + +  +L+  L+ K+    +  +   +++P+  V++ ME  G ++D+D
Sbjct: 447 ---EREDCFIKETLLFSRLYSTLKKKISDSSMDKLLYEVEQPLTFVLASMECEGFKVDKD 503

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  +    +  +++ IY LS E+FN++SPKQLG ILF KL  P   KTKTG   +T
Sbjct: 504 KLTEMEEKFKIEIDKVQKEIYFLSEEEFNINSPKQLGKILFEKLDLPVIKKTKTGY--ST 561

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             D+ +   G +P+I+ I+ +RQL+K+ STY + L   I +  + +H+ ++   T TGRL
Sbjct: 562 NADVLERLHGKHPVIEKIIYYRQLTKLYSTYIEGLKGVIEEDGK-IHSNFNQTVTTTGRL 620

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIPIK ++G++IR+ FI       ++SADYSQIELR+LAHI+    L   F 
Sbjct: 621 SSTEPNLQNIPIKYEMGKEIRKIFIPDNRDCVILSADYSQIELRVLAHISGDENLINAFI 680

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N  DIH   A+E+F V + +V+   R +AK +NF I+YGI  F LA  L IPR EA  YI
Sbjct: 681 NHNDIHTKTASEVFNVPLGEVTSTQRSNAKAVNFGIVYGIGDFSLARNLNIPRKEAKSYI 740

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF ++P +  Y+        +N YV TI  RR    EI S    I+ + ER A+N PI
Sbjct: 741 DAYFEKYPKVKLYMNDIVKQAEKNFYVTTILNRRRFIPEIKSSNKIIKALGERFAMNTPI 800

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM++V   L+D+   +K++LQ+HDELV  V ++E+     I+   ME   
Sbjct: 801 QGSAADIIKIAMVNVFNRLKDNNFKSKIILQVHDELVLNVYKDELKDVKDIVKEEMENV- 859

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L+VPL+V+I + +NW +
Sbjct: 860 ---FKLKVPLEVDISIGDNWYQ 878


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/979 (31%), Positives = 506/979 (51%), Gaps = 101/979 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG++  YRA+YA         G+P NA  G   ML + +++          AV F
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSTGIPTNATYGMARMLVRFIKDHIATGK-DFAAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++   YKA RPK P++L+ QLP ++   +A G+  +E++G+EADDIIAT  
Sbjct: 62  DKKAATFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                    + I++ DKD++QLV+    ++  VK     E  D + V +K+G+ P+++  
Sbjct: 122 VKGLPLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPQQIPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L ALTGD IDNIPG+ GIG                          K   + + +Y +   
Sbjct: 182 LLALTGDEIDNIPGVTGIGE-------------------------KTAVQLLEKYKD--- 213

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                            LE ++        +    + +    L +R +       A +E 
Sbjct: 214 -----------------LEDIMNH------IHELPQKVRKALLRDRESAVLSKKLAILET 250

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            V      E               +K  +F+S+  +       +                
Sbjct: 251 NVPIEINWEELCYQGYDREKLLPLLKELEFASIMKELQLYEESE---------------- 294

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  + +  + ++ V+KL+   S +  + T ++D F    + I++S   ++    
Sbjct: 295 ---PVGYKIVKDLGEFEKLVEKLKESPSFAVDLETSSLDPFDCDIVGISVSFKPKE---- 347

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 +I L    +Q     N   KE+L  LK+  E+     +G N+K+D  VL   G+
Sbjct: 348 ----AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGV 398

Query: 482 S-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-----IDKISD 535
             +    D M+ +Y+++      ++  +A K+L Y      +    S P        +  
Sbjct: 399 EPVPPHFDTMIAAYLIEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFADVPV 458

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +   ++ E++++  +L+  L  KL    L +V+ +++ P+++V+++ME+ G+ +D + L
Sbjct: 459 EKAANYSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFL 518

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTA 654
           K++S E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG + T  
Sbjct: 519 KKLSEEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRI 578

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE++  G++ II  ILE+R++ K+KSTY D+LP  +N +T R+H  ++   T TGRL+
Sbjct: 579 EVLEEL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRLS 637

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE 
Sbjct: 638 SSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEE 697

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +D+H + A+ IF V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L +P  EA   I 
Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMIV 757

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P + +YI++  +  ++ GYV T+FGRR    ++ +   + +   ER AIN PIQ
Sbjct: 758 NYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRRRDIPQLMARDRNTQAEGERIAINTPIQ 817

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI + + L++ K+ TKM++Q+HDELVFEVP+EE     +++   M     
Sbjct: 818 GTAADIIKLAMIEIDRELKESKMKTKMIIQVHDELVFEVPDEEKDALVELVKDRMTNV-- 875

Query: 954 PKINLRVPLKVNIKVSNNW 972
             + L VPL+V++ +   W
Sbjct: 876 --VKLSVPLEVDVTIGKTW 892


>gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9]
 gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9]
          Length = 988

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1018 (31%), Positives = 499/1018 (49%), Gaps = 90/1018 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             + LVDG S  +R+++A         R   G+P N   GF   L  ++   + ++    
Sbjct: 11  PTIILVDGHSLAFRSYFAFAKSRAGGLRTKSGIPTNVCFGFMQCLLDVIVKEQPQA---- 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD  A TFR+E   +YKANR   PE  +P L  +    +A  I  I   G+EADDI
Sbjct: 67  IAVAFDLAAPTFRHEADSNYKANRADTPEDFIPDLVNLYDLLEALNIQVITQPGYEADDI 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT--TCLYDTVKE---------EKIDIEHVI 169
           + T    +   G+ V I+S D+DL QL+       + +   E         ++     V 
Sbjct: 127 LGTLAETSVCSGYRVKILSGDRDLFQLIDENKGISVLNFTPEALKSSSNGIKEFHTLDVK 186

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P ++V  +AL GD+ DNIPG+ GIG KTA  LL  Y +L  I  N ++I     
Sbjct: 187 EKLGVLPTQVVDFKALCGDTSDNIPGVKGIGEKTAVKLLNIYKSLTEIYANINKITGA-N 245

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           ++ ++   E+A  S+ L  + TDVPITI ++   L+  +  ++I  L+ LEF K ++++ 
Sbjct: 246 QQKLIAGQESAFHSQYLAKIVTDVPITIKIQDCHLKGFDTAKIIPILEKLEFKKFLDKIQ 305

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
                   +                   T +  +T    +   SL D     ++  T   
Sbjct: 306 EIEKKFIHSQ-----------------STSLTGETNNSNTNNLSLDDDLWFFSAADTVNA 348

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHSK 405
              + L++ S    +      I     +++ V  LE         ++   T  +D  ++ 
Sbjct: 349 QKSQTLKQGS----SEIKVRIIDTEDKLRELVNILEQHKDPENPVAWDTETTDLDPRNAN 404

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + I       ++D +      +I L  + + +   KN     +LS L+K   +  + K 
Sbjct: 405 LVGIGCCWGTGENDVA------YIPLGHNITSN-LEKNLPLNTVLSTLEKILVSGDYPKT 457

Query: 466 GHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL--- 521
             N K+D+L+    GI++ G   D ML SYVL+  R+ H++  +A ++L     E     
Sbjct: 458 FQNAKFDRLIFKYQGITLDGVVFDPMLASYVLNPDRT-HNLTDLALRYLGLQLTEYDDIV 516

Query: 522 ---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMI 577
                ++    I  IS   V  +  +      QL   LR +L  +  L  +   +++P+ 
Sbjct: 517 QKSGKKERQKTIADISIHTVANYCGKQVYATWQLVGKLREELNEIPALFKLLVDVEQPLE 576

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+++ME  G+ I+   L+Q+S  I  +L +LE     ++GEKFNL SPKQL  ILF KL
Sbjct: 577 VVLAEMEHRGVIINSAYLQQLSQHIESDLATLEIKATKIAGEKFNLGSPKQLSYILFEKL 636

Query: 638 KF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
                   K  TG     A   +         +  I+E+R L+K+KSTY D+LP  +N +
Sbjct: 637 GLSTKYSRKISTGYSTDAATLEKLQEVDQTGFVDAIIEYRTLAKLKSTYVDALPELVNHK 696

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           TQR+HT ++  +T TGRL+S  PNLQNIPI+T   ++IR+AF+      +++ADYSQIEL
Sbjct: 697 TQRIHTNFNQTATATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMVAADYSQIEL 756

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RILAH+++   L Q + N+ DIH + A  +F  + E V+ + RR AKTINF +IYG+   
Sbjct: 757 RILAHLSQEPMLIQAYSNNQDIHTLTAKLLF--DKEDVTSEERRFAKTINFGVIYGMGVL 814

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
           + +    + ++ A ++I+++  R+P +  Y+E  K      GYVETI GRR ++D  N  
Sbjct: 815 KFSRSTGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGRRRYFDFTNKT 874

Query: 876 KSSIRNIN-------------------ERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
              ++  +                    R+A NAPIQGS+ADI + AM+ +H+ L  ++ 
Sbjct: 875 LQQLKGKDLQEIELNKLKNLGPYDAGLLRSAANAPIQGSSADIIKIAMVRLHEVLRRYQ- 933

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             K+LLQ+HDELVFEVP  E       I   ME A      L VPL V+I V  NW E
Sbjct: 934 -AKLLLQVHDELVFEVPPSEWDELQLQIKSVMENAM----KLSVPLVVDIHVGENWME 986


>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
 gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
          Length = 881

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/966 (32%), Positives = 482/966 (49%), Gaps = 118/966 (12%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML KL  + +     ++F V+FD    TFR+++YP YKA+RP +P+ L  Q+  +    +
Sbjct: 1   MLAKLYDDHQ----PAYFGVVFDAKGKTFRHDLYPAYKAHRPPMPDDLRVQIEPLHRLIE 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEK 162
           A G P I   G EADD+I T    A  E + V I S DKD+ QL++     L DT+K   
Sbjct: 57  ALGFPLIIEPGVEADDVIGTLAMQALSEHYQVVISSGDKDMAQLLTHADITLLDTMKNAV 116

Query: 163 IDIEHVIKKWGIPP---EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
               ++ +++ +     ++++   AL GDS DNIPG+  +G KTAA  L EY  ++    
Sbjct: 117 TTTANIAERFKVDALRADQVIDFLALVGDSADNIPGVAKVGPKTAAKWLAEYQTID---- 172

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
                       N++++A     S+                   +    G  L + +  L
Sbjct: 173 ------------NLIDHA-----SK-------------------IPGKIGDNLRAGIDTL 196

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
             ++ +  + TT D    N     L +   +   +A   +      IK            
Sbjct: 197 RLSQTLATINTTLDL---NTRIADLALQPRQPDKLAALCDTYELANIKA----------- 242

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
                      +L+              Y  I    ++   + +L+     +    TD++
Sbjct: 243 ----------QYLKNSAPPPPAAPVATHYRAITTLDELDALINRLQNSDGYAIDTETDSL 292

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D   +  + I+++    +          ++ L+   S      N    E L+ LK   E 
Sbjct: 293 DYMRANLVGISVAPAPGE--------AYYLPLAHQLS-----ANLPYAETLTRLKPLLEA 339

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-- 516
               K G + KYD+ +  R GI +RG  +D MLMSY +DS  + H++  +A  +L++   
Sbjct: 340 SAPPKSGQHHKYDRHIFARAGIELRGIKDDTMLMSYTIDSTATRHNLDDLADYYLNHQTT 399

Query: 517 -RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDK 574
             ++I       +  D+I       +A E++++ L+L   L PKL    +L  +Y  L+ 
Sbjct: 400 TFEDIAGKGAKQLTFDQIPLETATAYACEDADITLRLKNHLAPKLAAVPQLDALYRELEM 459

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+ +++ ++E TG++ID   L   SAEIS  L +LE   + L+G  FNL SPKQL +IL+
Sbjct: 460 PLAELLYKIEATGVRIDPAALAAQSAEISGQLAALEHAAHTLAGSPFNLGSPKQLQEILY 519

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            +L  P   KT  GQ  T  + L ++       + + ILE R L+K+K+TY D LP  IN
Sbjct: 520 DQLGLPVLRKTPKGQPSTNEEVLAELAESHGAELPRLILEHRGLAKLKTTYTDRLPELIN 579

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             T R+HT Y  A T TGRL+S +PNLQNIP++++ G++IRRAFI+    ++++ADYSQI
Sbjct: 580 PHTGRIHTSYHQAVTSTGRLSSSDPNLQNIPVRSEAGRRIRRAFIAEDGWQILAADYSQI 639

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRI+AH++    L   F    DIHR  AAEIFGV  E VS + RR AK INF +IYG+S
Sbjct: 640 ELRIMAHLSADPGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGMS 699

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F LA QL IPR +AADYI  YF R+P + +Y++ T+    + GYVET+ GRR++  +IN
Sbjct: 700 AFGLARQLNIPRGQAADYIDTYFARYPKVRDYMDATREAAHKQGYVETLLGRRLYLPDIN 759

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT--------------- 918
           S     R  +ER AINAP+QGSAADI +RAM+++ + LE   L                 
Sbjct: 760 SKNPQRRQASERLAINAPMQGSAADIIKRAMLAIDRELELSPLPGAGGTHNTNPLPREAT 819

Query: 919 --------KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
                   ++++Q+HDELVFE+  +     +  IV  ME A      L VPL V   +  
Sbjct: 820 AAKNRDDLRLIMQVHDELVFEIRPQAAAELTPRIVALMENAM----TLSVPLIVETGLGA 875

Query: 971 NWQEEN 976
           NW E +
Sbjct: 876 NWDEAH 881


>gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
 gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
          Length = 988

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1019 (30%), Positives = 497/1019 (48%), Gaps = 92/1019 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             + LVDG S  +R+++A         R   G+P N   GF   L  ++   + ++    
Sbjct: 11  PTIILVDGHSLAFRSYFAFAKSRAGGLRTKSGIPTNVCFGFIQCLLDVIAKEQPQA---- 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+ FD  A TFR+E   +YKANR   PE  +P L  +    +A  I  I   G+EADDI
Sbjct: 67  IAIAFDLAAPTFRHEADSNYKANRADTPEDFIPDLFNLYDLLKALNIQIITQPGYEADDI 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT--TCLYDTVKE---------EKIDIEHVI 169
           + T    A   G+ V I+S D+DL QL+       + +   E         ++     V 
Sbjct: 127 LGTLAETAVCSGYRVKILSGDRDLFQLIDENKGITVLNFTPEALKSSANGIKEFHTLDVK 186

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ P ++V  +AL GD+ DNIPG+ GIG KTA  LL  Y +L  I  N ++I     
Sbjct: 187 EKLGVLPTQVVDFKALCGDTSDNIPGVKGIGEKTAVKLLNTYKSLTEIYANINKITG-TN 245

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           ++ ++   E A  S+ L  + TDVPITI ++   L+  +  ++I  L+ LEF K ++R+ 
Sbjct: 246 QQKLIAGQENALHSQYLAKIVTDVPITIKIQDCDLKGFDTAKIIPILEKLEFKKFLDRIQ 305

Query: 290 TTYDCDA-ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                 + +    +  + N +    +A + ++          F S +D  +   S+   Q
Sbjct: 306 EIEKKFSHSQSASLTGETNKSNTDNLAPDDDLW---------FFSAADTVNAQKSQTLKQ 356

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHS 404
                          +      I   + + + V  LE         ++   T  +D  ++
Sbjct: 357 GS-------------SEIKVRIIDTEEKLGELVNILEQHKDPQNPVAWDTETTDLDPRNA 403

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
             + I       ++D +      +I L  + + +   KN     +LS L K   +  + K
Sbjct: 404 NLVGIGCCWGMGENDVA------YIPLGHNITTN-LEKNLQLNTVLSTLDKILASRDYPK 456

Query: 465 IGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-- 521
              N K+D+L+    G+++ G   D ML SY+L+   + H++  +A ++L     E    
Sbjct: 457 TFQNAKFDRLIFKYQGVTLDGVIFDPMLASYLLNPDHT-HNLTDLALRYLGLQLTEYDHI 515

Query: 522 ----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPM 576
                 ++    I  IS   V  +  +      QL   LR +L  +  L  +   +++P+
Sbjct: 516 VQKSGKKEPQKTIADISIHTVANYCGKQVYATWQLVGKLREELNKIPALFKLLVDVEQPL 575

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
             V+++ME  G+ I+   L+Q+S  I  +L +LE     ++GEKFNL SPKQL  ILF K
Sbjct: 576 EVVLAEMEHRGVIINSAYLQQLSQYIESDLATLEIKATKIAGEKFNLGSPKQLSYILFEK 635

Query: 637 LKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           L        K  TG     A   +     +   +  I+E+R L+K+KSTY D+LP  +N 
Sbjct: 636 LGLSTKYSRKISTGYSTDAATLEKLQEVDETGFVDAIIEYRTLAKLKSTYVDALPELVNH 695

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +TQR+HT ++  +T TGRL+S  PNLQNIPI+T   ++IR+AF+      +++ADYSQIE
Sbjct: 696 KTQRIHTSFNQTATATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMVAADYSQIE 755

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRILAH+++   L Q + N+ DIH + A  +F  + E V+ + RR AKTINF +IYG+  
Sbjct: 756 LRILAHLSQEPMLIQAYSNNQDIHTLTAKLLF--DKEDVTSEERRFAKTINFGVIYGMGV 813

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            + +    + ++ A ++I+++  R+P +  Y+E  K      GYVETI GRR ++D  N 
Sbjct: 814 LKFSRSTGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGRRRYFDFTNK 873

Query: 875 PKSSIRNIN-------------------ERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                +  +                    R+A NAPIQGS+ADI + AM+ +H+ L    
Sbjct: 874 TLREFKGKDLQEIELNKLKNLGPYDAGLLRSAANAPIQGSSADIIKIAMVRLHQVLR--P 931

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             TK+LLQ+HDELVFEVP  E       I   ME A      L VPL V++ V  NW E
Sbjct: 932 YQTKLLLQVHDELVFEVPPSEWDELQLQIKSVMENAM----KLSVPLVVDVHVGENWME 986


>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
 gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
 gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
          Length = 997

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1017 (31%), Positives = 507/1017 (49%), Gaps = 61/1017 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP--LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           MQ++  L+L+D    IYR+++A     L     G  V+A+ GF   L  LL + R     
Sbjct: 1   MQEKKTLYLLDAYGLIYRSYHAFARAPLINDS-GANVSAVYGFFRSLHTLLCHYRPR--- 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +F  +FD    TFR+  YP YKA R K    L  Q+PL+     A GI  +   GFEAD
Sbjct: 57  -YFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIP 175
           D+IAT       E   V IIS+DKD++QLV  T  +     + K    D  +V ++W + 
Sbjct: 116 DLIATLAKRVAAEHCHVVIISSDKDVLQLVCDTVQVLRLDIDHKWTCCDAAYVQQRWTVM 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ L +L GDS DN+PG+ GIG KTAA LL  +G L+ I  +   +K+   R  I+ 
Sbjct: 176 PTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEA-LRTKIVC 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTY 292
             + A  SR L+ LR DVP    LE       +               L           
Sbjct: 235 GKKDAFFSRSLIELRDDVPCVFSLEDSCCIPLDVTSAARIFVREGLHALAQQYRACVQEI 294

Query: 293 DCDAAN-----IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           D +A N      E  VL      N+    + E    T    S   S  +  +   S   P
Sbjct: 295 DTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKS--ELKTSAVSGAIP 352

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
            +    R   +     +   Y  + +  ++++ +      G  +F   TD +    ++ +
Sbjct: 353 IENRDLRQDVMLAR--SAGHYRGVTDPVELKRIIDCACANGVVAFDCETDGLHPHDTRLV 410

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHT-------------------------SQDSTGK 442
             +I     ++  +F V  I  D+S+HT                         S  +   
Sbjct: 411 GFSICF---QEAEAFYVPLIVPDVSLHTESTQCTCARSTNVETEKECTEQHGVSASAVQD 467

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR---GFEDIMLMSYVLDSG 499
               + ++  L++ + +E    + HN K+D  V+HR G+         D M+ +++LD  
Sbjct: 468 PAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPD 527

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           R ++ +  +A  +         +          +       +A E++++  +L+  L+ +
Sbjct: 528 RGTYGMDVLAASFFQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDADITFRLYHYLKLR 587

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L    LL V+E ++ P++ ++++ME  GI + +D+++Q++   S  +   E +I+ L+G 
Sbjct: 588 LETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGH 647

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN+ SPKQL  +LF +L  P G K   G   +T   + +     +PI + IL +R LSK
Sbjct: 648 EFNIGSPKQLQTVLFQELHLPPGKKNTQGY--STDHSVLKKLARKHPIAEKILLFRDLSK 705

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           ++STY +SL    + +T RVHT +    T TGRL+S  PNLQNIPIK+  G+KIR+AF +
Sbjct: 706 LRSTYTESLAKLAD-QTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQA 764

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
               +LISADY+QIEL +LAH+++   L   F   +DIH + AA IF V+I+ V P MRR
Sbjct: 765 TVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRR 824

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF I+YG+S FRL+ +L+I + EA  +I RYF  +PG++ +  +     R+ GYV
Sbjct: 825 IAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYV 884

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            ++ GRR +   I+S  +  R   ER A+N  IQ SAADI + AMI++ ++     L  +
Sbjct: 885 TSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQ 944

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +LLQ+HDEL+FE P  E     +I+   ME A    + L +PL+++++  N+W + +
Sbjct: 945 LLLQVHDELIFEAPAAETAIVKEILFAEMEHA----VELSIPLRIHVESGNSWGDFH 997


>gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 832

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/901 (33%), Positives = 471/901 (52%), Gaps = 89/901 (9%)

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
            L+    +  G P + ++G EADD+I T    +      V I + DKD+ QLV     L 
Sbjct: 1   DLLHACVKGMGYPFLCVEGVEADDVIGTLARSSAAADRPVVISTGDKDMAQLVDGHITLV 60

Query: 156 DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL- 214
           +T+    +D+  V +K+G+ PE ++   AL GD +DNIPG+PG+G KTA  LL   G   
Sbjct: 61  NTMTGSVMDVAGVKEKFGVGPEHIIDYLALMGDKVDNIPGVPGVGEKTAVGLLVGIGGGI 120

Query: 215 ENILINASRI------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
           + +  N  ++        K     + E+ E A LS +L  ++ DVP+ I L+ L   + +
Sbjct: 121 KELYENLDKVASLPIRGAKTLAAKLEEHREMAFLSYELATIKIDVPLDIELDQLHCGEPD 180

Query: 269 GPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKT 328
              L+     LEF   I  +                                        
Sbjct: 181 RDTLMELYAELEFKSWIEDLQR-------------------------------------- 202

Query: 329 SQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG 388
                        ++++  Q+L +E             +Y  I+       W++KL+   
Sbjct: 203 -------------DAKRAGQELTVEE----PTVEAREAAYEVILQQGQFDAWLKKLQAAP 245

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
             +F   ++  DA  ++ + ++ +     +     +   ++ +     +D+         
Sbjct: 246 LFAFVTQSNGTDAQRAQLVGLSFAIQTH-EAAYIPLTHSYMGVPQQLDRDT--------- 295

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR--------YGISMRGF-EDIMLMSYVLDSG 499
           +L  LK   E+    K+G + K+   +L           GI ++G   D +L SYVLDS 
Sbjct: 296 VLKALKPLLEDPDKTKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDST 355

Query: 500 RSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            + HD  S+  K+L++     +EI       +  D+I+  Q   +A E +++ L+L  + 
Sbjct: 356 ATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVF 415

Query: 557 RPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
             +L     L  V   ++ P++ V++++E  G  +D +LL   S E+   + +LE   + 
Sbjct: 416 DARLAAIPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFA 475

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           ++GE+FNL SPKQLG IL+ KL  P  +KT TGQ  T    L ++   D P+ K ++++R
Sbjct: 476 IAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYR 535

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            +SK+KSTY D LP  IN RT R+HT Y  A  +TGRL+S +PNLQNIPI+T  G++IR+
Sbjct: 536 SMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQ 595

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF++P   KL++ADYSQIELRI+AH+A+   L   F N LD+HR  AAE+FGV +E V+ 
Sbjct: 596 AFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTT 655

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            MRR AK INF +IYG+S F LA Q+ + R ++  Y+ RYF R+PG+  Y+E+T+    +
Sbjct: 656 DMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE 715

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            G+VETIFGRR++  +IN+   S+R   ER AINAP+QG+AADI ++AM++V+  L++  
Sbjct: 716 QGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDESG 775

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L  +++LQ+HDELV EV E+ +   S+ I   M  A      L VPL V + V NNW E 
Sbjct: 776 LDARVILQVHDELVLEVREDLVDQVSEQIRPHMSGAA----ELAVPLLVEVGVGNNWDEA 831

Query: 976 N 976
           +
Sbjct: 832 H 832


>gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
            Chicago]
          Length = 1015

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1017 (31%), Positives = 507/1017 (49%), Gaps = 61/1017 (5%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATP--LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            MQ++  L+L+D    IYR+++A     L     G  V+A+ GF   L  LL + R     
Sbjct: 19   MQEKKTLYLLDAYGLIYRSYHAFARAPLINDS-GANVSAVYGFFRSLHTLLCHYRPR--- 74

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             +F  +FD    TFR+  YP YKA R K    L  Q+PL+     A GI  +   GFEAD
Sbjct: 75   -YFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEAD 133

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIP 175
            D+IAT       E   V IIS+DKD++QLV  T  +     + K    D  +V ++W + 
Sbjct: 134  DLIATLAKRVAAEHCHVVIISSDKDVLQLVCDTVQVLRLDIDHKWTCCDAAYVQQRWTVM 193

Query: 176  PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            P +++ L +L GDS DN+PG+ GIG KTAA LL  +G L+ I  +   +K+   R  I+ 
Sbjct: 194  PTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEA-LRTKIVC 252

Query: 236  YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTY 292
              + A  SR L+ LR DVP    LE       +               L           
Sbjct: 253  GKKDAFFSRSLIELRDDVPCVFSLEDSCCIPLDVTSAARIFVREGLHALAQQYRACVQEI 312

Query: 293  DCDAAN-----IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
            D +A N      E  VL      N+    + E    T    S   S  +  +   S   P
Sbjct: 313  DTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKS--ELKTSAVSGAIP 370

Query: 348  QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
             +    R   +     +   Y  + +  ++++ +      G  +F   TD +    ++ +
Sbjct: 371  IENRDLRQDVMLAR--SAGHYRGVTDPVELKRIIDCACANGVVAFDCETDGLHPHDTRLV 428

Query: 408  AIAISTLDQKDDTSFKVETIFIDLSVHT-------------------------SQDSTGK 442
              +I     ++  +F V  I  D+S+HT                         S  +   
Sbjct: 429  GFSICF---QEAEAFYVPLIVPDVSLHTESTQCTCARSTNVETEKECTEQHGVSASAVQD 485

Query: 443  NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR---GFEDIMLMSYVLDSG 499
                + ++  L++ + +E    + HN K+D  V+HR G+         D M+ +++LD  
Sbjct: 486  PAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPD 545

Query: 500  RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
            R ++ +  +A  +         +          +       +A E++++  +L+  L+ +
Sbjct: 546  RGTYGMDVLAASFFQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDADITFRLYHYLKLR 605

Query: 560  LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
            L    LL V+E ++ P++ ++++ME  GI + +D+++Q++   S  +   E +I+ L+G 
Sbjct: 606  LETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGH 665

Query: 620  KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            +FN+ SPKQL  +LF +L  P G K   G   +T   + +     +PI + IL +R LSK
Sbjct: 666  EFNIGSPKQLQTVLFQELHLPPGKKNTQGY--STDHSVLKKLARKHPIAEKILLFRDLSK 723

Query: 680  IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
            ++STY +SL    + +T RVHT +    T TGRL+S  PNLQNIPIK+  G+KIR+AF +
Sbjct: 724  LRSTYTESLAKLAD-QTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQA 782

Query: 740  PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                +LISADY+QIEL +LAH+++   L   F   +DIH + AA IF V+I+ V P MRR
Sbjct: 783  TVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRR 842

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
             AKTINF I+YG+S FRL+ +L+I + EA  +I RYF  +PG++ +  +     R+ GYV
Sbjct: 843  IAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYV 902

Query: 860  ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
             ++ GRR +   I+S  +  R   ER A+N  IQ SAADI + AMI++ ++     L  +
Sbjct: 903  TSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQ 962

Query: 920  MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +LLQ+HDEL+FE P  E     +I+   ME A    + L +PL+++++  N+W + +
Sbjct: 963  LLLQVHDELIFEAPAAETAIVKEILFAEMEHA----VELSIPLRIHVESGNSWGDFH 1015


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/980 (31%), Positives = 507/980 (51%), Gaps = 103/980 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            LFL DG++  YRA+YA         G+P NA  G   ML + +++        + AV F
Sbjct: 3   RLFLFDGTALAYRAYYALDRSLSTSAGIPTNATYGVARMLVRFIKDHIIVGK-DYAAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++   YKA RPK P++L+ QLP ++   +A G+  +EI+G+EADDIIAT  
Sbjct: 62  DKRAATFRHKLLETYKAQRPKTPDLLIQQLPYIKRLVEALGMKVLEIEGYEADDIIATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                    + I++ DKD++QLV+    ++  VK     E  D + V +K+G+ P ++  
Sbjct: 122 VKGLSLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPHQIPD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L ALTGD IDNIPG+ GIG                          K   + + +Y +   
Sbjct: 182 LLALTGDEIDNIPGVTGIGE-------------------------KTAVQLLEKYRD--- 213

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                            LE ++        +    +    T L +R +       A +E 
Sbjct: 214 -----------------LEDILNH------IHELPQKTRKTMLRDRESAILSKKLAILET 250

Query: 302 -VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V ++IN  E +    + E       +    S + +      SE                
Sbjct: 251 NVPIEINWEELRYQGHDREKLLSLLKELEFASIMKELQLYEESEPV-------------- 296

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + +  + ++ V+KL+   S +  + T ++D F      I++S   ++   
Sbjct: 297 ------GYRIVKDPVEFEKLVEKLKETPSFAIDLETSSLDPFECDIAGISLSFKPKE--- 347

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I L    +Q     N   KE+L  LK+  E+     +G N+K+D  VL   G
Sbjct: 348 -----AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKG 397

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-----IDKIS 534
           I  +    D M+ +Y+++      ++  +A K+L Y      +    S P        + 
Sbjct: 398 IEPVPPHFDTMIAAYLIEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFVDVP 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   ++ E++++  +L+  L  KL    L +V+ +++ P++ V+++ME+ G+ +D + 
Sbjct: 458 LEKAANYSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEF 517

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653
           LK++S E  K L  L E IY ++GE FN++SPKQ+  ILF KL   P G  TKTG + T 
Sbjct: 518 LKKLSEEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTR 577

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + LE++  G++ II  ILE+R++ K+KSTY D+LP  +N +T R+H  ++   T TGRL
Sbjct: 578 IEVLEEL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRL 636

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQN+P K++ G++IR+A +   P   ++SADYSQIELRILAH++    L + FE
Sbjct: 637 SSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFE 696

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +D+H + A+ IF V  E+V+ +MRR  K +NFSIIYG++P+ L+ +L +P  EA   I
Sbjct: 697 EGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMI 756

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + +YI++  +  ++ GYV T+FGR+    ++ +   + +   ER AIN PI
Sbjct: 757 VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPI 816

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI + + L++ K+ +KM++Q+HDELVFEVP EE     +++   M    
Sbjct: 817 QGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVKDRMTNV- 875

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              + L VPL+V++ +   W
Sbjct: 876 ---VKLSVPLEVDVTIGKTW 892


>gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273]
 gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273]
          Length = 891

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/982 (30%), Positives = 496/982 (50%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 16  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 71  AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 131 LAKEASEQGAYVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  K            
Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGK------------ 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+A +   L+++   T   DA   
Sbjct: 239 -------------------------------KLKEKLEANKEQALMSKELATIITDA--- 264

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++    KG      ID     +   F+SL ++      E  P +L         
Sbjct: 265 -PITVHVDDMAYKGYE---PIDVIPMFENLGFTSLLNKLGVTPEETAPAEL--------- 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 312 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENG--- 357

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  I  D+++ +                  K +  N    K   + K   + L   
Sbjct: 358 ----CYFISADIALKS---------------DAFKAWLANAEMRKHTFDAKRAIVALKWK 398

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           G+ ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 399 GVDIQGIDFDLLIAAYLLDPADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVP----E 454

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 455 LDVVAEHVARKVHVLYDVKQTFIEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 572

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFQH 692

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 693 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 753 KYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 813 GSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 871 --IELAVPLKVDYSYGPTWYDA 890


>gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
 gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
          Length = 896

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/979 (30%), Positives = 519/979 (53%), Gaps = 94/979 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N LFL DG++ +YRA++A  +      G P NA+ G   ML + ++N   E    +    
Sbjct: 3   NRLFLFDGTAIVYRAYFAIDVSLTNSKGEPTNAVYGTARMLSRFIKNYIAEG--DYALFA 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    T R++++  YKA R ++P+ L+ QL  +    + FGI    +   EADDIIAT 
Sbjct: 61  FDRKEATHRHDLFEGYKATRAEMPDALVAQLKYIPDLVEGFGIKFHSVATLEADDIIATA 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
                 +   + I+S DKD++QLV     +   V      E+ D   V +K+G+PPEK+ 
Sbjct: 121 VTKYRDKFDEIVIVSGDKDILQLVDEKVKVLRFVSGLTDLEEYDRRKVEEKFGLPPEKIY 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L +L GD+ DNIPG+PGIG KTA  LL+EYG+++ I  N  ++     R+ +++  +  
Sbjct: 181 ELLSLCGDTSDNIPGVPGIGIKTALKLLKEYGSIDEIYKNIRKLSPG-LRKKLMDGKKAL 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S+KLV L TD         L +E          L+ L +  L                
Sbjct: 240 EMSKKLVRLVTDA-------DLHIE----------LEELRYRGLDKE------------- 269

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                      K   +  +++  + ++    ++L    ++ N                  
Sbjct: 270 -----------KLRELFLKLEFASLLREFDLTNLGSDNNEDNG----------------- 301

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + + +++ +  + L+     S  + T ++D   +K + I+++  D +   
Sbjct: 302 -------YRPVSSQQELDELFETLKGSDVISIDLETSSLDPHEAKIVGISVAIKDGEG-- 352

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I ++     +S+      K++L  LK+  E+     +G N+K+D  +L ++G
Sbjct: 353 ------FYIPVNH----ESSDWQADEKQVLLRLKELLEDSGTKIVGQNLKFDYEILEKHG 402

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDS 536
           I  +    D M+ +Y+L+      ++  +A K+L Y      E++   +     +K+S  
Sbjct: 403 IEPVVPHFDTMIAAYLLNPDSRRFNLDDLALKFLGYRTTSFSELMNKNQLKDQFEKVSVE 462

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +  ++++E++++ L+L+ +L  KL    L +++ +++  +I V++++E+ G+ ++ + LK
Sbjct: 463 EAAKYSVEDADIALRLYRVLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLK 522

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S E  K L  + E +++L+GE FN +SP Q+  ILF KL      KTK G + T+A  
Sbjct: 523 NLSEEYEKRLGKIREELFELAGEPFNPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAV 582

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   ++PII+ +L++R+  K+KSTY D+LP  +N  T R+H  Y    T TGRL+S 
Sbjct: 583 LEEL-VNEHPIIQKLLDYRKYQKLKSTYLDTLPTLVNPVTGRIHASYHQTGTGTGRLSSS 641

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            PN+QN+PIK + G++IR+  +      K+ISADYSQIELR+LAH ++   L   F+N  
Sbjct: 642 NPNMQNLPIKGEEGKEIRKCVVPQKSDWKIISADYSQIELRVLAHFSEDERLISAFKNGE 701

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H + A+ ++GV+++ V+P+MR+  K +NFSIIYGISP+ LA +L+I    A + I  Y
Sbjct: 702 DVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIYGISPYGLARRLKIKTHIAENMISNY 761

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F+ +PG+ ++I +  +  ++ GYV T+FGR+       +         ER AIN PIQG+
Sbjct: 762 FNAYPGVRKFINEVIHEAKEKGYVRTLFGRKREIPHFRTRNKMKIQEGERIAINTPIQGT 821

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI +HK +++  L    +LQ+HDELVFE P  E+     I+   M       
Sbjct: 822 AADIMKLAMIKIHKMVKEEGLEAFPILQVHDELVFEAPATEVDRVCDILTRGMSGV---- 877

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L+VPL+V++ V++ W +
Sbjct: 878 VELKVPLEVDVAVNSYWGK 896


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/978 (34%), Positives = 513/978 (52%), Gaps = 106/978 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            +FL DG+  +YRA++A         G+P NA+ G   ML K L+     +   + A + 
Sbjct: 3   RVFLFDGTGLLYRAYFAIDQSLTTTSGVPTNALYGLSRMLVKFLKEHVIINE-DYCAFML 61

Query: 66  D-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D     T+R E+Y DYKA+RP+ PE LL Q+ L     + FGI  I++ G+EADD+IAT 
Sbjct: 62  DVKGGSTYRKELYADYKAHRPETPEPLLKQISLADELIEGFGIKLIKVPGYEADDVIATL 121

Query: 125 TYIAEKEGF-----AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
               EKE        + II++DKD++QLV+    ++   K     +K     +I+K+GI 
Sbjct: 122 AKKFEKEKQKYNISEINIITSDKDMLQLVNENIFVWRVEKGVTDLKKYTNNEIIEKYGIT 181

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            E++    AL GD  DNIPG+ GIG KTAA +L E+G++EN L N S++ + K R  I  
Sbjct: 182 SEQIKDYLALVGDVSDNIPGVSGIGEKTAAKILNEFGSVENALKNISKLPE-KIRNAIEN 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E   LSRKLV L T+V I I +E L              K  +  KL+          
Sbjct: 241 NIEDFELSRKLVELNTNVEIKIDIEEL------------LYKGYDQKKLL---------- 278

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                         +K  +FSS+  +                  
Sbjct: 279 ----------------------------NVLKKFEFSSVIKEL----------------- 293

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             LS    N   Y  I N + +   ++ +      +  + T ++D F  K + I+I+  +
Sbjct: 294 -NLSAELTNKVEYKVIENERALSDLLETIMKSKKIALDLETTSLDPFEGKIVGISIAVDE 352

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K          +I ++         KN   + +  +L+  F +   +  GHNIK+D   
Sbjct: 353 GK--------AFYIPIAH-----VGAKNIPIESVKKFLRDLFNSGKTV-GGHNIKFDLKF 398

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP----- 529
           + R GI  +    D M+ +Y+L+      ++  ++ K L +         K +IP     
Sbjct: 399 ISRLGIEPQIPSFDSMIEAYLLNPNEKKFNLDELSLKLLGHKMISYEDLVKDTIPLFAGD 458

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              I      +++ E++++ L++  LL P +   ++  +YE+++ PMI V++ +E+ G+ 
Sbjct: 459 FSYIPVDTAVKYSCEDADMSLRIHNLLHPLIYSNEMNELYEKIELPMILVLANLELNGVY 518

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
            D   L  +S E+ K LL+L   I++++GE FNL+SPKQLG ILF KLK PS   T TG 
Sbjct: 519 FDIQYLNNLSQEMDKKLLALSNRIFEITGEAFNLNSPKQLGYILFEKLKLPSVKSTSTGA 578

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T  + LE +   +  I K ILE+R++ K+KSTY D++PN +NK T+RVH  ++   T 
Sbjct: 579 YSTDVEVLEYL-ANEYEIAKLILEYRKIQKLKSTYVDAIPNMVNKNTKRVHASFNQTGTA 637

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S +PNLQN+P ++D G++IR A         ++ ADYSQIELR+LAHI +   L 
Sbjct: 638 TGRLSSSDPNLQNLPGRSDEGKEIRMAVKPQKDGWYILGADYSQIELRVLAHITEDPNLI 697

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F+ + DIH   A ++FGV+ E ++  MRR  K +NF+I+YG+SP+ LA +  +   + 
Sbjct: 698 NAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFAIVYGVSPYGLAKRTGLDVKDT 757

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
              I+ Y   +  + EY+   K F ++NGYV T+FGR+    +INS   +IR   ER AI
Sbjct: 758 KKMIEAYLDYYKNVQEYMANIKEFAKKNGYVRTMFGRKRDIPQINSKDQNIRAEGERIAI 817

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AMI +++ L+D KL + M+LQ+HDELVFEVPE E+    +++   M
Sbjct: 818 NTPIQGSAADIMKIAMIRIYERLKDEKLQSMMILQVHDELVFEVPENEVEYVKKLVKEEM 877

Query: 949 EKACLPKINLRVPLKVNI 966
           E A    + LRVPL V+I
Sbjct: 878 ENA----VKLRVPLLVDI 891


>gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20]
 gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20]
          Length = 894

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/985 (32%), Positives = 506/985 (51%), Gaps = 104/985 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+  L  +DG+S + RAFY  P L    DG+  N I  F N++ K ++    E    +
Sbjct: 1   MSKQ-KLMAIDGNSILNRAFYGLPELLTTSDGIYTNGIYVFLNIMHKFIEEENPE----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A TFR+  Y  YKANR  +PE L  Q+PL++    A  I  +E++GFEADDI
Sbjct: 56  ICVAFDLKAPTFRHNKYEGYKANRKGMPEELRVQVPLLKEVLDAMNIKRLEMEGFEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGI 174
           + + +  AEK+G  V +++ D+D  QL+ P+T L            E+ D   +++ +GI
Sbjct: 116 LGSVSLCAEKKGLEVILVTGDRDAFQLIGPSTRLKLPRTRGGKTEVEEYDYNKIVEVYGI 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+ V ++AL GD+ DNIPG+PGIG KTA  L++EY NLEN+  +   IK+K  RE   
Sbjct: 176 KPEQFVDVKALAGDTSDNIPGVPGIGEKTALALIKEYNNLENLYNSLDSIKKKGLRE--- 232

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                     KL   +    ++     L L + N P L                     C
Sbjct: 233 ----------KLETFKEQAFLSR---ELALIERNMPSL---------------------C 258

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D   ++ V +D   T                 K  +F S  D+                 
Sbjct: 259 DIEELKRVEIDREKT-------------YEIFKRLEFRSFIDKFG--------------- 290

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L  +        +     N  +++     +          + D   +F  K  AIAIS +
Sbjct: 291 LNDVQIQNTVELNVKIAKNASELESLKNNILKSRKVCIYHLIDKTGSFSQKLAAIAISPV 350

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           + +          ++D + +  +D         E     K   E+ +  K GH++K   +
Sbjct: 351 EDE--------AWYLDFTNNIDED---------EFFRQFKDVLEDGNIKKYGHDLKNFIV 393

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530
            L+  GI   G   D M+ +Y+++  + ++ I+ +AQ++L+ +    +++    KS    
Sbjct: 394 YLNNRGIDFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSVKAVEKLAGKGKSFTLF 453

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    + +      +VI ++   +   L       +Y  ++ P++  ++ ME  G ++
Sbjct: 454 KDMQPDVLSKTVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADMEYYGFKV 513

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           + D L + S E+ + +  + + IY L+GE+FN++SPKQLG ILF KL  P   KTKTG +
Sbjct: 514 NVDALVEFSKELQEKIDVVTKEIYTLAGEEFNINSPKQLGVILFEKLGLPIIKKTKTG-Y 572

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A+ LE+++   + I++ ILE+RQL K+KSTYA+ L   IN  T ++H+ ++   T T
Sbjct: 573 STDAEVLEELS-DRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFNQTVTAT 631

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GR++S EPNLQNIPIK ++ +KIR+ FI       L+ ADYSQIELR+LAHI     +  
Sbjct: 632 GRISSTEPNLQNIPIKLEMSRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMIN 691

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N+ DIH   AA +FG+  E+V+P MR  AK +NF I+YGI  F LA  L+I R EA 
Sbjct: 692 AFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNFGIVYGIGDFSLAKDLKISRKEAR 751

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI  Y  R+P + +Y+       ++ G+V T+F RR +  E+ S   +IR+  ER A+N
Sbjct: 752 AYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRRRYLPELKSRNFNIRSFGERVAMN 811

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQGSAADI + AM+ VH  L+  KL ++++LQ+HDEL+ E  ++E     +I++  M+
Sbjct: 812 TPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILLEGMQ 871

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A    ++L+VPL V IK  +NW E
Sbjct: 872 NA----VSLKVPLVVEIKSGSNWYE 892


>gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1]
 gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1]
          Length = 875

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/981 (33%), Positives = 505/981 (51%), Gaps = 118/981 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML K+L+  +     +H  V 
Sbjct: 2   KKLILIDGNSIAYRAFFALPLLNNDK-GIHTNAVYGFTMMLSKILEEEK----PTHILVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q PL+R    A GI   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHETYSEYKGTRQKTPPELSEQFPLIRELLDAHGIERYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  AE+EGF V +IS DKD+ QLVSP T +  T K     E     HV +K+G+ P +++
Sbjct: 117 SKKAEEEGFIVKVISGDKDMTQLVSPKTTVMITRKGITDMEAYTPAHVEEKYGLTPHQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GDS DNIPG+PGIG KTA  LL+++  +                E +L++    
Sbjct: 177 DMKGLMGDSSDNIPGVPGIGEKTAIKLLKQFPTV----------------EELLDH---- 216

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                  + + +G +L   L+A +   L+++   T   D     
Sbjct: 217 -----------------------IGEVSGKKLQEKLEANKEQALMSKELATIHRD----- 248

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            + L I+  +      + E  R    +    S L        +E+ P    LE +     
Sbjct: 249 -IPLSISIEQAAYKHADPEKLRHLYQELGFKSMLEKMGGDTPTEEKPA---LEAISFSIA 304

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I ++ +  +                  +SF +     +    + I   +         
Sbjct: 305 EDITDNLFADV------------------SSFYVEILDENYHTGEIIGFGLKNEKG---- 342

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                     L    ++D+              KK+ E+E  +K  ++ K   + L RYG
Sbjct: 343 ----------LFFLRAEDALSS--------EAFKKWVEDESKIKHVYDAKRSIVALRRYG 384

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIA--QKWLSYTRKE--ILKSRKSSIPIDKISD 535
           I +RG + D++L+SY+L+   +  D AS+A    + +    E    K  K  +P +K   
Sbjct: 385 IDLRGTDFDLLLVSYLLNPSDTVEDFASVAKTHDYGNVETDEAVYGKGAKRKLPEEK--- 441

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +  EH    +  I  L       L     L ++E+L+ P+  +++ ME TG+++D D L
Sbjct: 442 -RYAEHISRKAEAIDALCEPCTKALKNNGQLELFEQLELPLSLILADMEYTGVKVDTDRL 500

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  E    L  +E+ IY ++G +FN++SPKQLG ILF K+  P   KTKTG   +T+ 
Sbjct: 501 KEMGEEFKLRLHEIEQRIYSMAGTEFNINSPKQLGVILFEKMGLPVIKKTKTGY--STSA 558

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +     + I++ IL +RQL K++STY + L   ++ +  +VHT ++ A T TGRL+S
Sbjct: 559 DVLEKLEPAHEIVREILHYRQLGKLQSTYIEGLLKVVH-QDGKVHTRFNQALTQTGRLSS 617

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIPI+ + G+KIR+AF+       + S+DYSQ+ELR+LAHI+    L + F   
Sbjct: 618 TDPNLQNIPIRMEEGRKIRQAFVPSEEGWLIFSSDYSQVELRVLAHISGDEKLIEAFREG 677

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A E+F V  E+V+ +MRR AKT+NF I+YGIS + L+  L I R EA ++IKR
Sbjct: 678 MDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNFGIVYGISDYGLSQNLGISRKEAGEFIKR 737

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +P + EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQG
Sbjct: 738 YFASYPRVKEYMDEIVREAKQKGYVSTLLKRRRYLPEITSRNFNLRSFAERTAMNTPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI ++AMI + K L+  KL  ++LLQ+HDEL+FE PEEEI    +I+   ME A   
Sbjct: 798 SAADIIKKAMIDMAKRLKKEKLRARLLLQVHDELIFEAPEEEIEVLKEIVPEVMEHA--- 854

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            ++L  PLKV+      W + 
Sbjct: 855 -VDLAAPLKVDSAYGPTWFDA 874


>gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 987

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1025 (32%), Positives = 511/1025 (49%), Gaps = 100/1025 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQ-NSRKESIASHFA 62
             L+L+DG +  +RA++A    ++      P N   GF  M+ KLL+   +      + A
Sbjct: 2   KTLYLIDGFAQFFRAYHAIRTPMTSPVTKEPTNMTFGFVGMMLKLLRGEGQMGGPPDYVA 61

Query: 63  VIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           V+ D      TFR+++YP+YKA R   PE L+PQ+       +A G+P +  +GFEADD+
Sbjct: 62  VVIDVSGDRGTFRSQLYPEYKATRDAPPEDLMPQVERALAMLRAAGVPVLGAEGFEADDV 121

Query: 121 IATYTYIAEKE--GFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIKKWGIP 175
           IAT      +      V I+S DKDL QL+    P T +YD   +E I  E +  ++GI 
Sbjct: 122 IATIASTFSERHPDVRVRIVSKDKDLKQLLGEGVPPTEMYDVHTDEVITAETLRAEFGIT 181

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK------- 228
           P +++ + AL GD++DN+PG+PG+G KTAA L+ E+G++E ++      K KK       
Sbjct: 182 PAQVIDMLALMGDTVDNVPGVPGVGPKTAAQLVAEFGSVEAVVAEVREEKAKKDWKIKGK 241

Query: 229 RRENILEYAE--TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           RRENIL  AE     LSR+LV LR DVP+ + LE               L+ L F +  +
Sbjct: 242 RRENILAAAEAGVLELSRELVALRHDVPVEMDLEASATPAFRLGEWQPLLEELGFNRYQH 301

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
            +       A +                  E             F+ L D  S     + 
Sbjct: 302 ELKLLMGGAAEDGGGAAPAGAPARRARKVQEEP--------GGLFAGLDDDDSGATVSEA 353

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
                                Y  +    ++ + V+ LE   + +    T  +    +  
Sbjct: 354 ------------------EGDYRCVRTAAELAELVKALEAAQAIAVDTETTAIRPMRADL 395

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           + ++ +               ++ +     +    + T    +L  L+   E+    K+G
Sbjct: 396 VGLSFAVEPGSG--------WYVPVRSPEPETHLDEAT----VLGALRPVLEDATKPKLG 443

Query: 467 HNIKYDKLVLHRYGISMRGFE-----------DIMLMSYVLDSGRSSHDIASIAQKWL-- 513
           HN+KYD LVL R G+ +RG             D M+ SY++D+ RSSH + ++A   L  
Sbjct: 444 HNLKYDILVLRRAGVELRGHVSTVGAGDWPGGDSMIASYLVDASRSSHSMDALAMALLER 503

Query: 514 -SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            +    E++ + K     D +   +   +A E+++V LQL   L P+L   +L  ++  L
Sbjct: 504 RNIPISELIGTGKKQKTFDTVPLDRATPYAAEDADVTLQLCQRLLPELQEMELGALFGGL 563

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS----GEKFNLSSPKQ 628
           + P++DV++++E  GI++D D L +    I   +  L   I D +    G +F+  SPKQ
Sbjct: 564 EMPLVDVLAELEWNGIRVDPDELDRQRGRIEGRVKDLRNQIADEAMGAVGREFDADSPKQ 623

Query: 629 LGDILFTK-------LKFPSGAKTKTGQWKTTAQDLEQINCGDN---PIIKNILEWRQLS 678
           L  +LF K       L      + KTG   T A+ LE+++   +   PI   ILE+RQL+
Sbjct: 624 LAGVLFNKPDAADPGLGLRVIKRGKTG-PSTDAEVLEKLSQDASVKTPIPDLILEYRQLT 682

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+ +TY  +L   I+ RT+R+H  ++     TGRL+S +PNLQNIPI+T+LG++IR+AF+
Sbjct: 683 KLVNTYLVNLVEEIDPRTKRIHASFNQTVAATGRLSSSDPNLQNIPIRTELGREIRKAFV 742

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P   L++ADYSQIELR+LAH+++   L + F    DIH  VAA+I  V + +VS + R
Sbjct: 743 AEPGHLLVAADYSQIELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQR 802

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
             AK +NF I+YG++ F LA +L +  SEA + I  Y  RF GI  ++E+        GY
Sbjct: 803 NGAKMVNFGIVYGVTAFGLARRLGVSNSEAGEIIDGYKRRFAGITTFLEECIAQAHAQGY 862

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           VET+  RR    +I+S   + R + ER AIN+ +QGSAAD+ + AM+ +H+ L     A 
Sbjct: 863 VETMMKRRRPIPDIDSRDQNRRALAERMAINSVVQGSAADLIKIAMVDLHRRLSPRAAAW 922

Query: 919 -----------KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
                      +MLLQIHDELVFE P++       +IV  ME A      L VPL  +  
Sbjct: 923 REGAGPEIEGVRMLLQIHDELVFEAPKDRAEAVRDLIVARMEAAMA----LDVPLVADAS 978

Query: 968 VSNNW 972
           VS +W
Sbjct: 979 VSGDW 983


>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema
           pallidum]
          Length = 997

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1017 (31%), Positives = 506/1017 (49%), Gaps = 61/1017 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP--LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           MQ++  L+L+D    IYR+++A     L     G  V+A+ GF   L  LL + R     
Sbjct: 1   MQEKKTLYLLDAYGLIYRSYHAFARAPLINDS-GANVSAVYGFFRSLHTLLCHYRPR--- 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +F  +FD    TFR+  YP YKA R K    L  Q+PL+     A GI  +   GFEAD
Sbjct: 57  -YFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIP 175
           D+IAT       E   V IIS+DKD++QLV  T  +     + K    D  +V ++W + 
Sbjct: 116 DLIATLAKRVAAEHCHVVIISSDKDVLQLVCDTVQVLRLDIDHKWTCCDAAYVQQRWTVM 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ L +L GDS DN+PG+ GIG KTAA LL  +G L+ I  +   +K+   R  I+ 
Sbjct: 176 PTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEA-LRTKIVC 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTY 292
             + A  SR L+ LR DVP    LE       +               L           
Sbjct: 235 GKKDAFFSRSLIELRDDVPCVFSLEDSCCIPLDVTSAARIFVREGLHALAQQYRACVQEI 294

Query: 293 DCDAAN-----IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           D +A N      E  VL      N+    + E    T    S   S  +  +   S   P
Sbjct: 295 DTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKS--ELKTSAVSGAIP 352

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
            +    R   +     +   Y  + +  ++++ +      G  +F   TD +    ++ +
Sbjct: 353 IENRDLRQDVMLAR--SAGHYRGVTDPVELKRIIDCACANGVVAFDCETDGLHPHDTRLV 410

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHT-------------------------SQDSTGK 442
             +I     ++  +F V  I  D+S+HT                         S  +   
Sbjct: 411 GFSICF---QEAEAFYVPLIVPDVSLHTESTQCTCARSTNVETEKECTEQHGVSASAVQD 467

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR---GFEDIMLMSYVLDSG 499
               + ++  L++ + +E    + HN K+D  V+HR G+         D M+ +++LD  
Sbjct: 468 PAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPD 527

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           R ++ +  +A  +         +          +       +A E++++  +L+  L+ +
Sbjct: 528 RGTYGMDVLAASFFQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDADITFRLYHYLKLR 587

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L    LL V+E ++ P++ ++++ME  GI + +D+++Q++   S  +   E +I+ L+G 
Sbjct: 588 LETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGH 647

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN+ SPKQL  +LF +L  P G K   G   +T   + +     +PI + IL +R LSK
Sbjct: 648 EFNIGSPKQLQTVLFQELHLPPGKKNTQGY--STDHSVLKKLARKHPIAEKILLFRDLSK 705

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           ++STY +SL    + +T RVHT +    T TGRL+S  PNLQNIPIK+  G+KIR+AF +
Sbjct: 706 LRSTYTESLAKLAD-QTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQA 764

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
               +LISADY+QIEL  LAH+++   L   F   +DIH + AA IF V+I+ V P MRR
Sbjct: 765 TVGHELISADYTQIELVALAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRR 824

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF I+YG+S FRL+ +L+I + EA  +I RYF  +PG++ +  +     R+ GYV
Sbjct: 825 IAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYV 884

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            ++ GRR +   I+S  +  R   ER A+N  IQ SAADI + AMI++ ++     L  +
Sbjct: 885 TSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQ 944

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +LLQ+HDEL+FE P  E     +I+   ME A    + L +PL+++++  N+W + +
Sbjct: 945 LLLQVHDELIFEAPAAETAIVKEILFAEMEHA----VELSIPLRIHVESGNSWGDFH 997


>gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824]
 gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824]
 gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
          Length = 871

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/978 (32%), Positives = 517/978 (52%), Gaps = 118/978 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA P L+   +GL  N I GF  ML K+    + + I +     F
Sbjct: 3   RLLVLDGNSLMNRAFYALPELTNA-EGLHTNGIYGFMTMLIKMRDEIKPDYIVT----TF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y DYKA R K+P  L  Q P+++   +   I   EI GFEADD+I T  
Sbjct: 58  DRKAPTFRHKEYEDYKAGRKKMPPELSEQFPVLKELLEKLAINIFEIDGFEADDLIGTLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A+++G  V I++ DKD +QL      +    K     E  D   +I+++G+ P + + 
Sbjct: 118 CFAKEKGIEVYIVTGDKDALQLADDNVKVVINKKGMTEKEIYDKNRMIEEFGVTPVQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD+ DNIPG+PGIG KTA  L+QEYG++EN+L N   IK KK +EN+  YAE A 
Sbjct: 178 VKGLMGDNSDNIPGVPGIGPKTAFKLIQEYGSVENVLDNIQNIKGKKIKENLENYAEQAV 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            S+KL  + T+VPI I +E +  ++                 L+ R+             
Sbjct: 238 FSKKLATIMTNVPIEIDIEEIRSKES--------FDVEGARHLLRRL------------- 276

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                       QF S+ ++   +N E       +E        
Sbjct: 277 ----------------------------QFKSIIEKIPSLNVEAEKSDFVVE-------- 300

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  I       +    ++                     I ++ S  + +  + 
Sbjct: 301 ------YNLIDEFPKFHELFSAIK-------DTE-----------IYMSYSIGNGELYSK 336

Query: 422 FKVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             ++TIF+ +   T      K      +++L  LK+FFEN+   KI H+ K    VL + 
Sbjct: 337 IYIDTIFMKVEEKTYIVDLKKIIEQNREDVLKDLKEFFENKKIAKIIHDSKNMYTVLMKN 396

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI +     D  +  Y+++  +  +++   A++ L     ++              D+ +
Sbjct: 397 GIKIENLAFDTAIAEYLINPSKKEYNLKDAAEEML---LLDLTG-----------EDNDI 442

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           +   I+   V+ +++  L+ K+    +  +Y +++ P+I+V+S ME  G +++++ L+Q+
Sbjct: 443 K---IKEVYVMDKIYNKLKDKIKEYDMDELYYKVELPLIEVLSSMESEGFKVEKNKLQQI 499

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             + +  +  +++ IY+++GE+FN+SSPKQLG ILF KL  P   KTKTG + T A+ LE
Sbjct: 500 GDKFTVEIAKVKDEIYNMAGEEFNISSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLE 558

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++    +PII+ ++ +RQL+K+ STY + L   I+   +++H+ ++   T TGRL+S EP
Sbjct: 559 KL-MDKHPIIEKVVYYRQLTKLYSTYVEGLKPVIDVD-EKIHSSFNQTVTTTGRLSSTEP 616

Query: 719 NLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPIK ++G++IR+ F+       ++SADYSQIELR+LAHIA    L   F++  DI
Sbjct: 617 NLQNIPIKNEMGREIRKVFVPENDNCIILSADYSQIELRVLAHIADDENLINAFKHHSDI 676

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+E+F V IE+V+ +MR +AK +NF I+YGIS F LA  +++ + EA +YI  YF 
Sbjct: 677 HTKTASEVFRVPIEEVTSRMRSNAKAVNFGIVYGISDFSLAQDIKVSKKEAKEYIDTYFE 736

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+P + +Y+E      ++N YV TI  RR    EI S    ++   ER A+N PIQGSAA
Sbjct: 737 RYPNVKKYLEDIVVTAKKNMYVNTIMNRRRIIPEIASSNKIVKGFGERLAMNTPIQGSAA 796

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + +M++V+  ++  KL ++++LQ+HDEL+  V ++E+    +++   ME+       
Sbjct: 797 DLIKLSMVNVYSKIKQLKLKSRLILQVHDELILNVHKDELEKVKELVKLEMEEVM----E 852

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L+VPL+V+I+  N W E 
Sbjct: 853 LKVPLEVDIESGNTWYEA 870


>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
 gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
          Length = 966

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1016 (31%), Positives = 506/1016 (49%), Gaps = 106/1016 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L+DG S  +RA++A         R   G+P +   GF N L +++++ + +       
Sbjct: 9   LILIDGHSLAFRAYHAFAHTKQGPLRTSTGIPTSVCFGFLNSLLQVIESQQPQ----CVI 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    +FR+++ P+YK +R + PE  +P L  ++L   A  +  + + G+EADDI+ 
Sbjct: 65  IAFDRKEPSFRHQLDPNYKGDRKETPEEFIPDLENLKLLLSALNLQIVTVAGYEADDILG 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD------------TVKEEKIDIEHVIK 170
           T    A +  + V I++ D+DL QLV     +                   +++   V +
Sbjct: 125 TLALKASQANYKVKIVTGDRDLFQLVDAQKKISVLYLEKNAFKASSPNGYTEVNPAEVEQ 184

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K G+ P ++V  +AL GD  D+IPGI GIG KTA  LL+EYG LE I  N   IK    +
Sbjct: 185 KLGVKPNQVVDYKALCGDKSDSIPGILGIGEKTAVTLLKEYGTLEGIYQNLESIKGA-LK 243

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + +    E A+ SR L  L  DVP+        L+      +   L+ LE  K I  +  
Sbjct: 244 KKLETGEENAKHSRILAQLALDVPVEFDFNTCQLKGFELETIRPLLEKLELKKFIQNINR 303

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS-SLSDQTSKINSEQTPQK 349
                              E  G  +      + + + S F  S SD   ++N       
Sbjct: 304 LQ-----------------EKFGGVVSLPSQSNESQQLSLFPVSGSDSIEQVN------- 339

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHSK 405
                 Q  S   +N      I  ++ + Q V+ L+   +     ++   T +++   + 
Sbjct: 340 ------QTESITKLNFIEPQLINTSEKLTQLVKLLKQYTNPAQPVAWDTETTSLEPKDTT 393

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + I     +Q        E  +I L+      + G+    +E+LS L    E+E++ K+
Sbjct: 394 LVGIGCCWGEQ------PTEVAYIPLNH-----TEGEQLPQEEVLSALSVILESENYPKV 442

Query: 466 GHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL------SYTRK 518
             N K+D++VL   GI + G   D ML SYVL     SH ++ + +++L      +Y   
Sbjct: 443 FQNTKFDRIVLLNKGIKLAGVVFDTMLASYVLRP-ELSHKLSDLCERYLENIKALNYRDL 501

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMI 577
           EI K++     I  +S  +V  +   ++     L   L  +L     L  +  ++++P+ 
Sbjct: 502 EIPKTQ----TIAHLSLEKVAHYCGMDAYATFMLVPKLIAELKQAPDLYELLLKVEQPLE 557

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+++ME TG+ ID   L Q+S ++ ++L  LE   Y+ +GE FNL SPKQL +ILF KL
Sbjct: 558 PVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAYEAAGESFNLGSPKQLSEILFEKL 617

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
                   K     +T     +   GD+PII  ILE R L+K+KSTY D+LP  ++ +T 
Sbjct: 618 GLNKRKSRKLKTGYSTDHATLEKLQGDHPIIDYILEHRTLAKLKSTYVDALPALVHPQTG 677

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AFI+     L+SADYSQIELRI
Sbjct: 678 RVHTDFNQAVTTTGRLSSSNPNLQNIPIRTEFSRQIRKAFITQDDWLLVSADYSQIELRI 737

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH+++   L + ++N  D+HR+ A  +F  + E ++ + R   KTINF +IYG+   R 
Sbjct: 738 LAHLSQEPVLLEAYQNYQDVHRVTAQLLF--DKEVITSEERSIGKTINFGVIYGMGAQRF 795

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A  + +   E  D+I +Y  ++  + EY+E+ K      G+V TI GRR +++  +   +
Sbjct: 796 ARSMGLSFQEGKDFIDKYHQKYARVFEYLERVKKEAIAKGFVTTIKGRRRYFEFFDDKLN 855

Query: 878 SIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            +R                      RAA NAPIQGS+ADI + AM+ +H+ L+ ++   +
Sbjct: 856 HLRGEKPENLDLDKLNLNYSDAQLLRAAANAPIQGSSADIIKIAMVQLHEILQHYQ--AR 913

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +LLQ+HDELVFE+P +E       I  +ME A    + L VPL V+I+   NW E 
Sbjct: 914 LLLQVHDELVFEIPPDEWEDLQVKIKDTMENA----VKLTVPLVVDIRSGKNWMEA 965


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/1013 (31%), Positives = 479/1013 (47%), Gaps = 98/1013 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
                LVDG S  YR+++A         R  +G+P +   GF   L +++   + E+   
Sbjct: 12  RPTFILVDGHSLAYRSYFAFAKGRDGGLRTKEGIPTSVCFGFLKCLLEVMTTEQPEA--- 68

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             A+ FD    TFR+E    YKA+RP  PE  +P L  ++     F +P     G+EADD
Sbjct: 69  -IAIAFDLNLPTFRHEADDTYKADRPGTPEDFIPDLKNLQELLTGFNLPIFTAPGYEADD 127

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLV-----------SPTTCLYDTVKEEKIDIEHV 168
           ++ T    A   G+ V I+S DKDL QL+           SP      T    +  IE V
Sbjct: 128 VLGTLAQKASAAGYKVKILSGDKDLFQLINPEQEITVLNFSPDALKRSTNSITEFSIEEV 187

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
             K G+ P ++V  +AL GD  DNIPG+ GIG KTA  LL +YG+L  I    + IK   
Sbjct: 188 KAKLGVLPTQIVDYKALCGDKSDNIPGVRGIGEKTAVQLLTKYGSLAEIYAAINEIKGAV 247

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +   +    E A  S+ L  +  DVP+ I LE+  L   +   L   L+ LEF   + ++
Sbjct: 248 QT-KLAAGKEDAEKSKYLAKIVLDVPLEIKLENCKLTGFDTSLLTPILEKLEFKHFLGKI 306

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                           D       G   ET     T  +    S  +   +     Q P 
Sbjct: 307 ----------------DELQQHFGGEIAETSTATPTDDEDEDISFFTPAETAAAILQQPA 350

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHS 404
            L   R+               I   + +++ V+ LET  +     ++   T  ++   +
Sbjct: 351 SLIQPRI---------------INTPEKLKELVKLLETFTNPDIPVAWDTETSDLEPRDA 395

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
             + I      Q D+++      +I ++        G+N     + + L     +  + K
Sbjct: 396 TLVGIGCCWGTQPDESA------YIPIAHK-----FGENLSQDVVFAELSPILTSADYPK 444

Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
              N K+D+LV    GI + G   D ML SYVL+   + H++  I+ ++L    K     
Sbjct: 445 TFQNGKFDRLVFRCQGIKLAGIVFDTMLASYVLNPD-TPHNLNDISLRYLGLILKSYEDL 503

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQ 582
                 I  IS + V  +     +   QL   LR +L     L  +   +++P+  V+++
Sbjct: 504 VPKGQTIADISIASVGYYCCLQVHATFQLVQKLREELEKFPALHKLLLEVEQPLEAVLAE 563

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--P 640
           ME TG+ I+   L ++S ++  +L  LEE    ++GE FNL SPKQL  ILF KL     
Sbjct: 564 MEYTGVCINSAYLHELSQQLEIDLAKLEETATSIAGETFNLGSPKQLSVILFDKLGLSTK 623

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              K KTG     A   +     +   +  ++E+R LSK+KSTY D+LP  +   TQR+H
Sbjct: 624 YSRKIKTGYSTDVATLEKLQEVDETGFVDAMMEYRTLSKLKSTYVDALPALVRPDTQRLH 683

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T ++   T TGRL+S  PNLQNIPI+T   ++IR+AF+      + +ADYSQIELRILAH
Sbjct: 684 TNFNQTVTATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGYLMAAADYSQIELRILAH 743

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +++   L Q ++ + DIH + A  +F      ++   RR AKTINF +IYG+   R +  
Sbjct: 744 LSQEPILLQAYQQNEDIHTVTARLVF--EKSDITSDERRIAKTINFGVIYGMGSLRFSRS 801

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             I +S A ++IKR+  R+P +  Y+E  K      GYVETI GRR + D  N     ++
Sbjct: 802 TGIDKSIANEFIKRFNERYPQVFAYLEGVKKQAISQGYVETILGRRRYVDFKNDSLRKLK 861

Query: 881 NINE-------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           N                      R+A NAPIQGS+ADI + AMI +H+ L+  K   ++L
Sbjct: 862 NSKPEDIDLSKLKNLGPEDAGLLRSAANAPIQGSSADIIKIAMIRMHEVLQ--KYQARLL 919

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDELVFEVP +E       I   ME A    + L VPL V+++  +NW E
Sbjct: 920 LQVHDELVFEVPPQEWEELQPQIKSVMENA----VTLSVPLLVDVRAGDNWME 968


>gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328]
 gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328]
          Length = 945

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/985 (29%), Positives = 488/985 (49%), Gaps = 65/985 (6%)

Query: 15  FIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV 70
             +RA+YA         R   G+P +   GF   L +++   + E      A+ FD    
Sbjct: 1   MAFRAYYAFGKSRSGGLRTSTGIPTSVCFGFLQSLLEVIDIYKPEL----VAIAFDRAEP 56

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           TFR+E   +YKA+R + P   +  +  ++   +AF IP   + G+EADD++ T       
Sbjct: 57  TFRHEADANYKADRAETPADFIQDINNLQQLLEAFRIPIFSVAGYEADDVLGTLANRGSA 116

Query: 131 EGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            G+ V I+S D+DL QL+                   ++     V +K  I PE++V  +
Sbjct: 117 AGYQVKILSGDQDLFQLIDEQKQITVLHLSHGKGSSPQEFAAPQVYEKLSIKPEQVVDYK 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD  D IPG+ GIG KTA  LL EYG+L++I  + ++IK       + +  E A  S
Sbjct: 177 ALCGDQSDCIPGVRGIGEKTAVKLLAEYGSLDSIYESVNQIKGA-IANKLKQGQELAYHS 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           + +  +  DVP+ I  E   L+  +   +I  L+ LEF   I+++          ++  +
Sbjct: 236 QNMATIICDVPLDINWEDCQLQGFDSQEIIPLLQQLEFQVFIDKIHQLQSQFKGLVDVEI 295

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
              N+  +    +++  D             S + + + ++                   
Sbjct: 296 NSSNSEVSYPTELDSSEDSSENNDDDDLWFFSAEDTALETKA----------------IA 339

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           N+     I   + +   V +L+T  +     ++   T +++   +  + I      +  D
Sbjct: 340 NSIHPQIIQTPEALALLVNRLKTHTNPDKPVAWDTETTSLEPRDANLVGIGCCWGSELSD 399

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +      +I L+      + G+    +E+L  L+   E+E++ K   N K+D+L+L   
Sbjct: 400 LA------YIPLNH-----TQGEMLNIEEVLPALRPILESENYPKTLQNAKFDRLILRSQ 448

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535
           GI+++G   D ML SYV++   SSH++  ++ ++L       +   +       I  +  
Sbjct: 449 GITLKGVVFDTMLASYVINP-ESSHNLTDLSLRYLPDLGIVAQSYSQLVPKGKTIADLDI 507

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           + V  +   +     Q+   ++  L  V  L  +  ++++P+  +++ ME  GI+ID D 
Sbjct: 508 NTVANYCGLDVFTTFQITQKMQDILKDVPPLNDLLRQVEQPLEPILAGMEFQGIRIDTDY 567

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L Q+S ++ + L SLE+  +  +GE FNL SPKQL ++LF +L+       KT    +T 
Sbjct: 568 LNQLSKQLGETLESLEKASHQAAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTD 627

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             + +    D+P+I  ILE+R LSK+KSTY D+LP  +   T R+HT ++ A T TGRL+
Sbjct: 628 ATVLEKLKHDHPVINYILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQAITSTGRLS 687

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPI+T+  ++IR+AFI      L+SADYSQIELRILAH+++   L + +  +
Sbjct: 688 SSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKMLIEAYNTN 747

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H + A  +F  + ++++   RR  K INF +IYG+   R A ++ +  +    +I R
Sbjct: 748 QDVHSLTAQLLF--DKDEITADERRLGKIINFGVIYGMGSQRFAREVGVSATAGKQFIDR 805

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE----RAAINA 890
           +  ++PG+ EY+E  K      GYVETI GRR +++ +        N  +    RAA NA
Sbjct: 806 FNSQYPGVFEYLESQKLAAINQGYVETILGRRRYFESLKGRDRDRLNYQDEQMLRAAANA 865

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGS+ADI + AMI + + L+      ++LLQ+HDELVFEVP  E       I  +ME 
Sbjct: 866 PIQGSSADIIKIAMIKLAEILK--NYQARLLLQVHDELVFEVPLSEWEELQHQIKSTMEN 923

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
                  L VPL V+I    NW E 
Sbjct: 924 CLF----LSVPLVVDIHAGTNWMEA 944


>gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 908

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/975 (31%), Positives = 521/975 (53%), Gaps = 77/975 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
              F++DG+++I+RA++A P LS  ++   VNA+ GF  +L K+  + + +    + AV 
Sbjct: 2   KKFFIIDGNAYIHRAYHALPPLSTSNN-RQVNAVYGFVKLLLKIKNSFKPD----YMAVC 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FDYP+  FR+EI+ DYKANR  + + L+ Q+P+ R A +A  +  IEI+G+EADD+IAT 
Sbjct: 57  FDYPSKNFRHEIFKDYKANRKPLDKALISQMPIAREAVKALNVVGIEIKGYEADDLIATV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           T   +  G    I++ DKD++QL    T  +++  K+   D + V +K+G+ P+++  + 
Sbjct: 117 TGNNKGSGVQTVIVTGDKDILQLAEDETVLIWNYSKDIMYDTKKVEEKYGVAPKQLSDIF 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPGI GIG KTA  L++++GNLEN+L NA  +K     + +    E A LS
Sbjct: 177 ALMGDASDNIPGIKGIGEKTAVKLIEKFGNLENVLQNADSVKGN-MGKLLSHGKEQALLS 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           RKL+ L   VP+   L     +D +  + +SF +  EF  L+ + +              
Sbjct: 236 RKLIELNRRVPLDYKLGEFESKDIDAGKAVSFFEKYEFKSLLAKYS-------------- 281

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E +   I  E  R+    +  F                                
Sbjct: 282 --VKEHELQFPVILNETHRNEEAGSGSF------------------------------VT 309

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +   +  + + +   +  +K+E  G  + K +  T+D+  ++ + I++   +        
Sbjct: 310 DKPVFEVVNSQERAAEVAEKIEQAGIFALKTVRSTLDSLKTRIVGISLCVEN-------- 361

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +  +  +      D T +  + ++        F ++   KIGH++K ++ +    G+ +
Sbjct: 362 -KAFYFPIGH---NDLTARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNIYSMSGVGL 417

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT--RKEILKSRKSSIPIDKISDSQVQE 540
                DIML SY L+  +S H I  +++++L +T                   S     +
Sbjct: 418 NNIYFDIMLASYCLNPAKS-HCITDMSKEYLDFTAGVGSYAWKGSKKSSFANSSIEAGAK 476

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A   S  +  ++ +   ++  +KL  ++   +  +++++S+MEI+GI++D   L+  + 
Sbjct: 477 YANSISAAVFAIYKIFDFQIKEKKLSLLFFDTEMSLVEILSEMEISGIKVDLPFLRNFNE 536

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +I   L  +E NIY ++G +FN++S KQL  ++F KL  P   KTKTG + T  + L ++
Sbjct: 537 KIVYELKIIENNIYKIAGIEFNINSQKQLSSVMFEKLNLPVIKKTKTG-YSTDEEVLVEL 595

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
           +   +     IL++R+L K+KSTY D L ++      R+HT ++ A T TGRL+S EPNL
Sbjct: 596 SS--HEFPAEILKYRELQKLKSTYIDPLTDYCVYYGSRIHTIFNQAVTTTGRLSSTEPNL 653

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP+K+  G++ R+AF+    K  ISADYSQI+LR+LAHI++ T   + F+   DIH  
Sbjct: 654 QNIPVKSAYGKEFRKAFVPERNKIFISADYSQIDLRVLAHISQDTKFIEAFKAGTDIHSA 713

Query: 781 VAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            A EIF +     ++  +R  AK+INF IIYG+SPF L+ QL IP  +A +YI  YF R+
Sbjct: 714 TAREIFNIPEGYPLTDSLRSAAKSINFGIIYGMSPFGLSKQLNIPFGKAKEYIDGYFERY 773

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +  ++E+      ++GYV TI GR  +  E+ S  + +R   ER A+N P+QGS+ADI
Sbjct: 774 DKVKFWMEQIVKQASEDGYVRTITGRIRYIPELRSTNAQVRKAGERMALNTPVQGSSADI 833

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMISV+  ++     + MLLQ+HD+L+FEVP+ E      II + ME      ++L 
Sbjct: 834 IKIAMISVYNEIKLKGYKSLMLLQVHDDLLFEVPDGESENMISIIKNKMENP----LHLS 889

Query: 960 VPLKVNIKVSNNWQE 974
           +P+ V+IK   NW E
Sbjct: 890 IPIVVDIKAGRNWGE 904


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/972 (32%), Positives = 503/972 (51%), Gaps = 91/972 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N+++++DGS++IYRA++A   L+   +GL  +AI GF NM+ +L+    K+ + +   +
Sbjct: 2   KNNIYVIDGSAYIYRAYHAVAPLTT-REGLHTHAILGFVNMIRRLI----KDKVPALMVI 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD     FR+E+YP YKANRP +PE L  Q+P ++   +A G+  +E  G EADDIIA+
Sbjct: 57  AFDSRGPVFRHEMYPKYKANRPMMPEDLQEQIPYIKEFVKASGLLLLEEAGVEADDIIAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                  E  AVT++S DKDL+QLV     ++D +K++ +D   V +K+ + P +++   
Sbjct: 117 IAKKFASEECAVTVVSGDKDLLQLVDANVSMFDPMKDKLMDSVAVHEKYNVYPHQLLDTF 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+PG+G KTA  L+  +G+LE +  N S +KQ                 
Sbjct: 177 ALMGDSADNIPGVPGVGPKTAEKLINAHGSLEGLYENVSGMKQS---------------- 220

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                                              ++   + NR       D  +++  V
Sbjct: 221 ----------------------------------KMKEKIIANRDLAFLSRDLISLKMDV 246

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
              +  ++  +  E E   +      +F+                   L+  +      +
Sbjct: 247 EIPSALQDYQLGGEQEAQLNELFTKLEFNRF-----------------LKGGEPTKNKKV 289

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               ++ +  ++ + Q    L           T ++DA  +  + I++     +      
Sbjct: 290 AGTGFSLVQTSEALAQMAAVLGHASRIVIDTETTSLDARTAGLVGISLCAELDR------ 343

Query: 424 VETIFIDLSVHTSQDST-GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GI 481
               +I L+   +  +         E+++ L+        LK+GHN+KYD  VL    G+
Sbjct: 344 --AWYIPLAHIEATGTPVPGQLPISEVMAVLEPLLTCADILKVGHNLKYDWTVLKMQTGV 401

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASI-AQKWLSYT-RKEILKSRKSSIPIDKISDSQVQ 539
            +    D M+ +++L+ GR+   +  + A+  L  T   E++   K +     ++  +  
Sbjct: 402 EIFPLADTMVAAHLLEKGRTLK-LDDLCAEIGLELTSFAEVVAEDKRADAFAYVALKEAC 460

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            ++ E+    L LW     KL  + L  ++  ++ P+I V+++MEI G+ +D  +L +++
Sbjct: 461 HYSCEDVYGALSLWQDFGEKLSDKALDGLFYDVEMPIIPVLAKMEIGGVCLDSTVLVELA 520

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A+  + +  L   IY   G +FN+SSPKQLG ILF +L  P G KTKTG + T  + +E+
Sbjct: 521 AQFEEQIGELAATIYQEVGHEFNISSPKQLGVILFEELGLPHGRKTKTG-FSTDVKVMEK 579

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +P+   IL++R ++K+KSTY D L    N  T R++T ++   T TGRL+S  PN
Sbjct: 580 L-ASQHPVPALILKYRTIAKLKSTYVDKLLLLKNPETGRIYTSFNQTITATGRLSSSNPN 638

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +QNIPI+ + G +IRRAF+    K  ++ADYSQI+LR+LAH +    L + F    DIH 
Sbjct: 639 MQNIPIRMEEGNRIRRAFVPEAGKVFLAADYSQIDLRVLAHYSGDDALTRAFAAGQDIHA 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+F V+   V+P+MRR AK+INF I+YG+S F LA QL I R EA  +I RYFH +
Sbjct: 699 RTAAELFSVSTMLVNPEMRRVAKSINFGIVYGMSAFGLAQQLGIGRKEAQRFIDRYFHLY 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ +++       R+ GY  T+ GRR    +I++    +R   ER AIN PIQG+AADI
Sbjct: 759 AGVKQFMIDIVEQTRERGYATTLLGRRRAVPDIDAKNKGMREFAERMAINTPIQGTAADI 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V K L    L  KMLLQIHDELVFEV E E+     ++  +ME A    + L 
Sbjct: 819 IKCAMIAVEKKLAAAGLGAKMLLQIHDELVFEVSEAELAETRVVVQEAMESA----LQLD 874

Query: 960 VPLKVNIKVSNN 971
           VPL  NI+V ++
Sbjct: 875 VPLVANIEVGHS 886


>gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
 gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
          Length = 891

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/980 (31%), Positives = 520/980 (53%), Gaps = 108/980 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              L ++DG+S I RAFYA P      +GL  NAI GF  ML+K+++        +H +V
Sbjct: 9   NKRLIIIDGNSIINRAFYALPQTMDNKEGLHTNAIYGFTTMLFKMIEI----YEPTHISV 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++ Y  YKA R K+P+ L  Q+  ++    AF I   EI G+EADDII T
Sbjct: 65  AFDRKAPTFRHKEYSKYKAGRKKMPQELFEQMQPLKDLLDAFKIERFEIDGYEADDIIGT 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  AE++GF V I++ DKD +QL S  T    T K     E+ + + VI+K+ + P + 
Sbjct: 125 ISKAAEEDGFEVFIVTGDKDAIQLASNKTTTLITKKGVADVEEYNYDSVIEKYEMTPTQF 184

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PG+G KT   L++++G++EN++ +   +K   +++   E  E 
Sbjct: 185 IDLKGLMGDKSDNIPGVPGVGEKTGIKLIKQFGSIENLVEHTDELKGSIKKKI-EENKEE 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A  S+ L  +  DV                                              
Sbjct: 244 AIHSKWLATIVRDV---------------------------------------------- 257

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+  D++        +E  I++    K   F+SL  +   ++ E    +    ++    
Sbjct: 258 -PIEFDLDKMVFGDYKVEDVIEKFQFFK---FTSLIKKVMDMSGESAIAEESDSKMD--- 310

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                      +    D ++ +  +   G  + K++T   +      I + I+       
Sbjct: 311 -----------VNYDVDSKEIISLINEKGEFALKVVTKVGNILEKNIICMYITL------ 353

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                             D      +++E +   K   E++   K G+N+K D + L  Y
Sbjct: 354 ------------------DGDKVFCVSEERIMDFKAVLESKDIKKYGYNMKEDYVALMPY 395

Query: 480 GISMRGF-EDIMLMSYVLDSGR-SSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            I+++G   DI +  Y++DS   ++ +  +IA K+L  +   ++E+L     +   + ++
Sbjct: 396 EIALKGMSFDIAIAEYLIDSTSTNTSECGAIAMKYLMKSVKSKEELLGKGVKAKKFEDLT 455

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++  +     N ++     ++ ++   K+  +++ ++ P+++V+  ME TGI++D+++
Sbjct: 456 KEELSGYISSILNTVVNAMPKMKEEIESTKIEKLFDDVEMPLVEVLGNMEYTGIKVDKEM 515

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++  E +K + SLEE IY  +GE+FN++SPKQLG ILF KL+ P   KTKTG + T A
Sbjct: 516 LDELGKEFTKIISSLEEEIYGYAGEEFNINSPKQLGVILFEKLELPVIKKTKTG-YSTNA 574

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE++    +PII  I E+RQ+ K+ STY + L   IN    R+H+ ++   T TGR++
Sbjct: 575 EVLEKLK-DKHPIIDKIGEYRQIVKLNSTYVEGLTALINPIDGRIHSTFNQTITTTGRIS 633

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP++ ++G+++R  F+S   K+L+ ADYSQ+ELR+LAH++    +   F++ 
Sbjct: 634 STEPNLQNIPVRMEIGRRLRAVFVSDDEKRLVDADYSQVELRVLAHMSGDQNMIDAFKHG 693

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  A+++F V +E+V+ ++R  AK +NF IIYG + F L+  L IP  +A  YI+ 
Sbjct: 694 EDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIYGKTDFGLSEDLNIPVPQAKQYIES 753

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF ++  I E+++       ++GY +T+F RR +  EI S     RN  +RAA+NAPIQG
Sbjct: 754 YFAKYEKIKEFMDNIIETAEKDGYSQTMFNRRRYIPEIKSKNFMERNRGKRAAMNAPIQG 813

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM++V + LE  +L +K++LQ+HDEL+ E P +E+    +I+   ME A   
Sbjct: 814 SAADIIKIAMVNVFRRLEKEELRSKLILQVHDELIVETPIDELEKVEKIVREEMENA--- 870

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            ++++V L V++    +W E
Sbjct: 871 -VDMKVALTVDLNTGVSWYE 889


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1016 (29%), Positives = 491/1016 (48%), Gaps = 108/1016 (10%)

Query: 2   QKENHLF-LVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
            ++N LF L+DG S  +RA+YA         R   G+P +   GF N L +LL+  +   
Sbjct: 4   AEQNKLFILIDGHSLAFRAYYAFAKSRSGPLRTSTGIPTSVCFGFLNSLLQLLETQK--- 60

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             ++ AV FD    +FR+E   +YKANR + PE   P L  ++    A  IP +   G+E
Sbjct: 61  -PTYLAVAFDLAVPSFRHEADVNYKANRQETPEEFRPDLTNLQSLLAAMNIPIVTSPGYE 119

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---------TTCLYDTVKEEKIDI-- 165
           ADD++ T    A   G+ V I++ D+DL QLV                 +   +      
Sbjct: 120 ADDVLGTLAKQAGDNGYTVKILTGDRDLFQLVDEEKKTTVLYLDINAVKSTSGQGYTEFN 179

Query: 166 -EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            + V +K G+ P+++V  +AL GD  DNIPG+ GIG KTA  LL++Y NL++I  N   I
Sbjct: 180 SQAVTEKLGVTPKQVVDFKALCGDKSDNIPGVRGIGEKTAIDLLKKYDNLDDIYTNLESI 239

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           K    +  +LE    A  SR L  +  D P+++  +   L   +   + + L+ LE  K+
Sbjct: 240 KGM-VKTKLLEGKPAAESSRYLAKISLDAPVSLEEDKFRLRGFDRRLVKALLERLELKKI 298

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           + ++                       + +     ++  +    +Q S            
Sbjct: 299 LQKLDQI-------------------QQHLGGTPTLELTSDADANQLSLFDLPPISPPVL 339

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF----KIITDTMD 400
             P                       I     +   + KL T  +  F       T  ++
Sbjct: 340 IAPD---------------------IIDTIPKLDALLAKLTTFTNPHFPVAWDTETTDLN 378

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
              +K + I      + +         +I +         G N   + +L  L+    ++
Sbjct: 379 PRVAKLVGIGCCWGKELNA------MAYIPIGHQ-----NGDNLNLEIVLEKLRPILASD 427

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
           ++ K+  N K+D  V +  GI+++G   D M+ SYVL     +H++  +  ++L      
Sbjct: 428 NYPKVFQNAKFDIDVFYHQGITVKGLVFDTMVASYVLHP-ELTHNLEDLCDRYLDGITSL 486

Query: 520 ILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPM 576
             KS        I  +  +    +   ++     L   L+ +L  +  L  ++  ++ P+
Sbjct: 487 SYKSLGIPGGKTIADLDITTTANYCGLDAYATYLLREKLQAELTKIPSLYQLFSEVESPL 546

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+ QME  GI+I+ + LK +S ++ ++L  +E+  Y+  GE FNL SPKQL +ILF +
Sbjct: 547 VMVLWQMENYGIKININYLKNLSQQLERDLADIEKKAYESIGETFNLGSPKQLSEILFDR 606

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L        KT    +T Q + +   GD+P+I  ILE R LSK+KSTY D+LP     +T
Sbjct: 607 LALNRKKSRKTKTGYSTDQSVLEKLQGDHPLIDYILEHRTLSKLKSTYVDALPKLAEPKT 666

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT ++   T TGRL+S  PNLQNIP++++  ++IR+AFI      L+SADYSQIELR
Sbjct: 667 ARVHTDFNQTITSTGRLSSSNPNLQNIPVRSEFSRRIRQAFIPEDGYLLVSADYSQIELR 726

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH+++   L + + ++ D+H++ A  +F  +  +++P+ R   KTINF +IYG+   +
Sbjct: 727 ILAHLSQEPVLLEAYRSNQDVHKVTAQLLF--DKGEITPEERSLGKTINFGVIYGMGAQK 784

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            A + ++   +   +I++Y  R+  + +Y+E +K      GYVETI GRR +++  N   
Sbjct: 785 FARESKLTVEQGRKFIEKYHQRYAQVFQYLENSKKQAIAQGYVETILGRRRYFNFDNPLL 844

Query: 877 SSIRNIN------------------ERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
             +R ++                   R+A NAPIQGS+ADI + AM+ + + L+      
Sbjct: 845 KRLRGLSLHDIDLDSLKLNNEEAQLLRSAANAPIQGSSADIIKVAMVKLAEVLQ--NYRA 902

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++LLQ+HDELV EVP EE  +    I  +ME+A    ++L VPL V IK  +NW E
Sbjct: 903 RLLLQVHDELVLEVPREEWPSLESKIKTTMEEA----VSLTVPLLVEIKAGDNWME 954


>gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 942

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/979 (30%), Positives = 492/979 (50%), Gaps = 109/979 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S +YRAF+A P L+   DG P NA+ GF  M+ +L+ + +     +H AV F
Sbjct: 63  KLVLIDGNSILYRAFFALPPLT-ARDGTPTNAVYGFTTMILRLMSDEK----PTHLAVAF 117

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+  +  YK  R + P+ L+ Q PL R   +A  IP +EI  +EADD+I T  
Sbjct: 118 DKSKTTFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMVEIDQYEADDVIGTLA 177

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKMV 180
             A + GF V ++S DKDL+QLV     +  T K     E  D + V +++ G+ P +++
Sbjct: 178 KRAAEAGFDVRVVSGDKDLLQLVDDRIHVLLTRKGITEMEHFDEQAVARRYPGLKPAQVI 237

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD  DNIPG+PG+G KTA  LL  +G +E +  +   ++ +K            
Sbjct: 238 DLKGLMGDPSDNIPGVPGVGEKTALKLLASFGTVEGVYDHLDEVQGQK------------ 285

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                          L   L+       +++   T  CDA    
Sbjct: 286 -------------------------------LRERLEQHREDAFLSKRLATIACDA---- 310

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+ +D+ T   +G             +   F SL D+ S+  S  +            + 
Sbjct: 311 PIEVDLETLRYEGP---DPARAIAWFRELDFRSLVDKISEEMSHDS-TPTPSPAAASGAS 366

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              ++ +Y  I +    Q+ +            +     D   ++   +A++T       
Sbjct: 367 SEWSSFAYGLIEDAGAWQEAISSFSEPVGVMMDLA--DPDYHRAEIRGMAVAT------- 417

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++                    LS ++ +  ++   K+  ++K     L  +G
Sbjct: 418 --PKRAYYVRFGERLE-------------LSDVRPWLVSDR-PKVAFDLKSMAFALDAHG 461

Query: 481 ISMR---GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           I +    G++D+ L +Y+L+      +++ +             + R   +P     + +
Sbjct: 462 IGLTSECGWQDVKLAAYLLNPQDGEVELSDV-----------FARERGQELP--AWEEGE 508

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            ++     ++ +  L+  L   + ++++  +Y+ ++ P+  V+++MEITG  ++++ L  
Sbjct: 509 REKWLAYTASQLPPLFESLAYTIRMQEMERLYQEVELPLAFVLAKMEITGFYVNREKLVA 568

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+++ +  + + IYDL+G  FNL+SPKQLG+ILF KL  P+  KTKTG   +T+ D+
Sbjct: 569 FGQELTERIKRITQEIYDLAGTSFNLNSPKQLGEILFDKLGLPALKKTKTGY--STSADV 626

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +     + I++ IL++R L+K++STY + L   I K T RVHT +    T TGRL+S E
Sbjct: 627 LEKLAPMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVHTRFHQTLTATGRLSSSE 686

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+ + G+++R+ F        + +ADYSQIELRILAH++    L   F   +D
Sbjct: 687 PNLQNIPIRLEEGRRLRQVFEPTYKDWVIFAADYSQIELRILAHLSGDEALIDAFRRDMD 746

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA++F V  E+V+  MRR AK +NF I+YGIS F LA  L IP+ EA  +I+ YF
Sbjct: 747 IHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNIPQKEAKRFIESYF 806

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            +FPG+  Y+++     R+ GYV T+  RR +  +I+S    +R+  ER A+N PIQGSA
Sbjct: 807 EKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERTAMNTPIQGSA 866

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ + +++ D ++  +MLLQ+HDEL+FE P++E+     ++  +ME A     
Sbjct: 867 ADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVRDNMENAM---- 922

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L VPLKV+      W + 
Sbjct: 923 TLSVPLKVDTAYGPTWYDA 941


>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
          Length = 880

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/985 (31%), Positives = 505/985 (51%), Gaps = 116/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS    G+  NA+ GF  +L K+L++ +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GIHTNAVYGFTMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  + +YK  R K P  L  Q+P +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V I S DKDL QL +  T +  T K     E    +HV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKIFSGDKDLTQLATEHTTVAITRKGITDVEFYTPQHVEEKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNIPG+PG+G KTA  LL+++ ++E +L +   +  KK        
Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHSVEKLLESIGEVSGKK-------- 227

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                              L   L+  +   ++++   T   DA
Sbjct: 228 -----------------------------------LKEKLEEFKDQAVMSKELATIMTDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + +   +  G   E  I   +  K   F++L ++  + N E   Q+ F +   
Sbjct: 253 ----PIDISLAELDYDGFNREQVI---SIFKDLGFNTLLERLGEENGEAEQQQEFED--- 302

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 ++     ++ +   +            ++F +     +   +  +  ++     
Sbjct: 303 ------VDIHKVEEVTSGMLV----------SPSAFVVEQIGDNYHEAPILGFSLVNETG 346

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 ++                             KK+ E+E   K   + K   + L
Sbjct: 347 HYYIPKEIAVQ----------------------SEIFKKWAEDESQKKWVFDSKRSVVAL 384

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPID 531
              GI ++G   D +L +Y+++   +  D+AS+A+ +  +          K  K ++P  
Sbjct: 385 RWQGIELKGAEFDALLAAYIINPANTYDDVASVAKDYGLHIVSSDEAVYGKGAKRAVP-- 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              ++++  H +  +  +  L   L  +L     L +YE L+ P+  ++ +ME  G+++D
Sbjct: 443 --GENELAMHLVRKAAAVDSLREKLLQELENNDQLELYEELELPLALILGEMESIGVKVD 500

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+++  E+   L   EE I++++GE FN++SPKQLG ILF KL  P   KTKTG   
Sbjct: 501 VGRLERMGEELGARLKEYEEKIHEIAGEPFNINSPKQLGVILFEKLGLPVVKKTKTGY-- 558

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + I+  IL++RQ+ K++STY + L   I K + +VHT ++ A T TG
Sbjct: 559 STSADVLEKLADQHDIVSYILQYRQIGKLQSTYIEGLLKVIRKDSHKVHTRFNQALTQTG 618

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI+K   L + 
Sbjct: 619 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEA 678

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N +D+H   A ++F V  ++V+P MRR AK +NF I+YGIS + L+  L I R EAA 
Sbjct: 679 FTNDMDVHTKTAMDVFHVAQDEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAA 738

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RY   F G+  Y+E++    +Q GYV T+  RR +  E+ S   ++R+  ER A+N 
Sbjct: 739 FIERYLESFKGVKVYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNT 798

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++ +L  K+LLQ+HDEL+FE P+EEI    +++   ME 
Sbjct: 799 PIQGSAADIIKKAMIDMAAKLKEKQLKAKLLLQVHDELIFEAPKEEIKLLEKLVPEVMEH 858

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    +NL VPLKV+     +W + 
Sbjct: 859 A----LNLDVPLKVDFASGPSWYDA 879


>gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
 gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
          Length = 874

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/981 (33%), Positives = 514/981 (52%), Gaps = 119/981 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDG+S  YRAF+A PLL+ +  G+  NA+ GF  ML K+L+  +     +H  V 
Sbjct: 2   NKLVLVDGNSIAYRAFFALPLLNNEK-GVFTNAVYGFTTMLLKILEEEK----PTHMLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  QLP++R   +AF I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHNTYKEYKGKRQKTPGELAEQLPVMRDLLKAFNITYYEVENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A K  + V I+S DKDL+QLVS    +  T K     +  D++ + +K+GI PE+++
Sbjct: 117 STKASKSNWEVKIVSGDKDLLQLVSENVKVALTRKGITNVDTYDLQMIDEKYGIKPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+PG+G KTA  LL+++G +E +  +                    
Sbjct: 177 DMKGLMGDASDNIPGVPGVGEKTALKLLKQFGTVEKLYES-------------------- 216

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                  LED +G +L   L   +    +++   T + ++    
Sbjct: 217 -----------------------LEDVSGKKLKEKLAENKDNAFMSKKLATIELNS---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV +D    E+  +      +     K  +F+SL ++  +    + P             
Sbjct: 250 PVTIDF---EDTKLTDPNNKEVTALFKELEFNSLLERIDQEEEAEQPL------------ 294

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             ++ +    I                  ++  +     +  +++ + I+I         
Sbjct: 295 VDVDVEVVHTITEDMLY----------SPSAIVVEVLEENYHNAEIVGISIVNEVGS--- 341

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I   V  + D               KK+  +E   K   N K   + L    
Sbjct: 342 ------YYIPTEVAINSDM-------------FKKWANDEKNEKWIFNAKQAIVSLGWND 382

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           IS+RG   DI + SY++D   SSH++A I+ +  SYT K       K +K  +P ++I  
Sbjct: 383 ISLRGVTFDIQIASYLIDPSASSHEMADISNRKRSYTVKSDEAVYGKGKKRQVPEEEI-- 440

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             V +H +  +  I  L   L  +L   +   +++ L+ P+  V+  ME+ GI I+++ L
Sbjct: 441 --VAQHLVRKAAAINVLKEELESELKENEQFELFKDLEMPLSIVLGHMEMNGISINKEEL 498

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            Q+   +S  L ++E+ I++L+G +FN++SPKQLG+ILF KL+ P   KTKTG   +T+ 
Sbjct: 499 LQMGETLSDKLSTMEKEIHELAGVEFNINSPKQLGEILFDKLQLPVVKKTKTGY--STSA 556

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +     + I++ IL +RQL K+ STY + L   I++++ ++HT ++ A T TGRL+S
Sbjct: 557 DVLEQLRDKHEIVEKILLYRQLGKLNSTYIEGLLKVIHQKSGKIHTIFNQALTQTGRLSS 616

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPI+ + G+KIRRAF+       + +ADYSQIELR+LAHI+    L   F+ +
Sbjct: 617 TEPNLQNIPIRLEEGRKIRRAFVPERENAVIFAADYSQIELRVLAHISNDENLTNAFKEN 676

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +D+H   A ++F V+ ++V+  MRR AK +NF I+YGIS + L+  L I R EA  +I R
Sbjct: 677 MDVHTKTAMDVFHVSADEVTSLMRRTAKAVNFGIVYGISDYGLSQNLGITRKEAKKFIDR 736

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+ EY+E      R NGYV T+  RR +  EI S   ++R+  ER A+N PIQG
Sbjct: 737 YFDSYPGVKEYMESIVEEARVNGYVTTMLHRRRYLPEITSRNFNLRSFAERTAMNTPIQG 796

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI ++AM+ + + +++  L + +LLQ+HDEL+FEV +EEI T  +++   ME A   
Sbjct: 797 SAADIIKKAMVKMEEEMKEKGLKSTLLLQVHDELIFEVVQEEIETMKELVPKVMENA--- 853

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            +NL VPLKV+    + W + 
Sbjct: 854 -VNLAVPLKVDFSFGDTWYDA 873


>gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 920

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/983 (30%), Positives = 502/983 (51%), Gaps = 77/983 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L+  +    A H AV 
Sbjct: 2   DKLVLIDGHSILNRAFYGVPDLTN-SEGLHTNAVYGFLNIMFKILEEEK----ADHLAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+++Y  YK  R  +PE L  Q+ L++    A G+P + + G+EADDI+ T 
Sbjct: 57  FDLKEPTFRHKMYDAYKGTRKPMPEELHQQVDLMKEVLTAMGVPILTLAGYEADDILGTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEK 178
              ++ +G  V+++S D+DL+QL      +                   V +++ + P +
Sbjct: 117 ARKSQSQGIDVSVVSGDRDLLQLSDEHIKIRIPKTSRGGTEVKDYYPADVEREYQVTPTE 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GDS DNIPG+P IG KTA  L+  Y ++EN   +   IK  + R+ + E+ +
Sbjct: 177 FIDVKALMGDSSDNIPGVPSIGEKTATSLIAAYKSIENAYAHLDEIKPPRARKALEEHYD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            AR+S++L  + TD P+    E   +++   P    ++K LEF  +++R   +   D + 
Sbjct: 237 MARMSKELATICTDCPVEFNYEDTRIDNLYTPEAYQYMKRLEFKSILSRFDASAMGDVS- 295

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                     +     F+ + D+TS  +         +  L   
Sbjct: 296 -------------------------ASSLEDHFTLIRDETSAADVFARAAASGVTGL--- 327

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQK 417
            Q  I   +  K    +  +Q     +  G   + K     ++        +A+   ++ 
Sbjct: 328 -QLIIGTQAGAKAAKPEAAEQLSFSFDENGEVKAGKKAKSGLNPVT----GLALCLGEE- 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS--YLKKFFENEHFLKIGHNIKYDKLV 475
                       D+    + +      L +++ +   LK             N+K     
Sbjct: 382 ------------DIYCMAAGEKLSGEFLIRQVKALCALKP---GSSHEVWVLNLKEMLPY 426

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
           L   G       D  +  Y+L+  + ++    +A+ +L  T   R ++L        +  
Sbjct: 427 LET-G-DTAPVYDGGVAGYLLNPLKDTYGYDDLARDYLGLTVPSRADLLAKADLGDALWN 484

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             D++    A   +  + +    L  +L    +  +Y+ ++ P+I  +  ME  G+++++
Sbjct: 485 -EDARAVTCACYMAYTVWKAAAPLTRQLKDTGMYALYKEIEMPLIYSLYHMEQEGVKVER 543

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L++    +   ++ LE+ IY  +G++FN++SPKQLG+ILF  +K P G KTKTG   +
Sbjct: 544 AELEEYGNRLKVRIVDLEQEIYRDTGKEFNINSPKQLGEILFEDMKMPGGKKTKTGY--S 601

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+      D P+++ IL++RQL+K+ STYA+ L  +I +   R+H  ++   T TGR
Sbjct: 602 TAADVLDKLAPDYPVVQKILDYRQLTKLNSTYAEGLAAYIGEDG-RIHGKFNQTITATGR 660

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++S EPNLQNIP++ +LG++IR+ F+       + ADYSQIELRILAH++    L + + 
Sbjct: 661 ISSTEPNLQNIPVRMELGREIRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYR 720

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++ DIH + A+E+F V + +V+P  RR+AK +NF I+YGIS F L+  L I R EA +YI
Sbjct: 721 SAQDIHAITASEVFHVPLGEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEAVEYI 780

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF  +PG+  +++   +  ++ GYV T++GRR    E+ S     R   ER A+N+PI
Sbjct: 781 NKYFETYPGVKIFLDGLVSQGKEQGYVTTLYGRRRPIPELKSANFMQRQFGERVAMNSPI 840

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI+V + L    L ++++LQIHDEL+ E  E+EI T  +I+V  M+ A 
Sbjct: 841 QGSAADIMKIAMIAVDRELRARNLKSRIVLQIHDELLIETAEDEIGTVKEILVDKMKHAA 900

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
                L+V L+V  +V  +W + 
Sbjct: 901 ----ELKVSLEVEAEVGRSWFDA 919


>gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18]
 gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18]
          Length = 890

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 490/982 (49%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 15  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 70  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYNLSPKQI 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK           
Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKK----------- 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 239 --------------------------------LKEKLEANKEQALMSKDLATIITDA--- 263

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 264 -PITVHVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 310

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 311 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENGCYF 359

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                   T         K +  N    K   + K   + L   
Sbjct: 360 I----------------------QTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKWK 397

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 398 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 453

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 454 LEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 513

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 514 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 571

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 572 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 631

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 632 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 691

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 692 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 751

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 752 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 811

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 812 GSAADIIKIAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 869

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 870 --IELAVPLKVDYSYGPTWYDA 889


>gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046]
          Length = 876

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/986 (32%), Positives = 493/986 (50%), Gaps = 122/986 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+  L L+DG+S  YRAF+A PLL+    G+  NA  GF  ML K++     E   + 
Sbjct: 1   MTKQ-KLLLLDGNSLAYRAFFALPLLTNDS-GIHTNATYGFTTMLQKII----GEENPTQ 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q P +R    A+ I   E++ +EADDI
Sbjct: 55  MLVAFDAGKTTFRHESFGEYKGGRQKTPPELSEQFPYIRKLIDAYNIKRYELEMYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A  +G  V ++S DKDL QL +    +Y T K     EK    H+ +K+G+ P
Sbjct: 115 IGTLAKQAAGQGIEVIVVSGDKDLTQLATEDVTVYITRKGITDIEKYTPAHIEEKYGLTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GD  DNIPG+PG+G KTA  LL+E+G +E +      +K  K +E ++  
Sbjct: 175 EQIIDMKGLMGDQSDNIPGVPGVGEKTAIKLLKEHGTIEKLYEEMDSLKASKMKEKLV-- 232

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                          +   +    K L           T   DA
Sbjct: 233 -------------------------------DNEEMAHLSKKL----------ATIHTDA 251

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + ++     G   E  ++     +   F SL +++     E    +L  E +Q
Sbjct: 252 ----PLTISLDDLAYAGPDEEALLNVW---QELGFKSLIEKSDFEAVETEQAELVFENVQ 304

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            ++   +                         + +  +  +         + +A+S  ++
Sbjct: 305 AITGDMLK-----------------------ETMAIHLELENEHYHSCNALGLALSDGER 341

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              T+        D                      LK + ++E   K   + K  + +L
Sbjct: 342 TVYTAIDNVVDNAD----------------------LKAWLQDETKKKYIVDSKATQAML 379

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPID 531
           HR GI ++G   D++L SY+L    S  D+A++A+++    +        K  K  +P  
Sbjct: 380 HRLGIELKGVEFDLLLASYILKPSISGDDVATLAKEFGYQDVQSNEAIYGKGAKWVVP-- 437

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
                 V EH    +  + +L  LL  KL   +   +Y+ L+ P+  ++ +ME  GI ++
Sbjct: 438 --GADHVAEHVSRKAVAVWKLQPLLDQKLKENEQFELYKELELPLAHILGKMESEGITVN 495

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D L+Q+  ++   L  +E  IY+L+GEKFN++SPKQLG ILF KL  P   KTKTG   
Sbjct: 496 IDTLRQMGDDLKAKLEVMEATIYELAGEKFNINSPKQLGVILFDKLGLPVIKKTKTGY-- 553

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +TA D+ +    ++ I+K ILE+R L+K++STY + L   ++K   +VHT +  A T TG
Sbjct: 554 STAADVLEKLQSEHDIVKYILEYRTLAKLQSTYIEGLIKEVHKEDSKVHTRFQQALTSTG 613

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIPI+ + G+KIR+AF+       L +ADYSQIELR+LAH+     L + 
Sbjct: 614 RLSSTNPNLQNIPIRLEEGRKIRKAFVPSKKDWILFAADYSQIELRVLAHMCGDEALVEA 673

Query: 771 FENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+  +DIH   A ++F + N ++V+  MRR AK +NF I+YGIS + L+  L I R EAA
Sbjct: 674 FQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKAVNFGIVYGISDYGLSQSLDITRKEAA 733

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +I+ Y   FPG+  Y++ +    ++ G+V TI  RR +  +I S   ++R+  ER A+N
Sbjct: 734 IFIENYLQSFPGVKNYMDTSIEEAKKAGFVTTILNRRRYLPDITSSNFNLRSFAERTAMN 793

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQGSAADI ++AMI ++  LE   L TK+LLQ+HDEL+FE P+EEI    +I+   ME
Sbjct: 794 TPIQGSAADIIKKAMIDMNARLEQEGLQTKLLLQVHDELIFEAPKEEIEILERIVPEVME 853

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    I L VPLKV       W + 
Sbjct: 854 NA----IKLSVPLKVEFSYGATWYDA 875


>gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
 gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
          Length = 953

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/1016 (30%), Positives = 499/1016 (49%), Gaps = 105/1016 (10%)

Query: 1   MQKENHLFL-VDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  ++ L L VDG S  +R++YA         R   G+P +   GF   L ++++  + +
Sbjct: 1   MSVDSPLLLLVDGHSLAFRSYYAFAKGRDGGLRTRTGIPTSVCFGFLKALLEVMEQQQPK 60

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +     A+ FD    TFR+E   +YKANR + PE        +    Q   +P +   G+
Sbjct: 61  A----LAIAFDLGGPTFRHEADENYKANRDEAPEDFKIDTDNLVALLQTLNLPILVEPGY 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP----------TTCLYDTVKE--EKI 163
           EADD++ T      + G+ V I+S D+DL QLV P           T      +E   +I
Sbjct: 117 EADDLLGTVAQRGAEAGYRVRILSGDRDLFQLVDPEGAIRVLYLGNTFGRSANREAAREI 176

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D   VI K G+PPE+++  +AL GDS DNIPG+ GIG KTA  LLQ +G+L+ I  N   
Sbjct: 177 DPAAVIDKLGVPPEQVIDFKALCGDSSDNIPGVKGIGPKTAVDLLQAWGDLDRIYDNLEA 236

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           IK    R+ +    E A  SRKL  + TD+P+ I  +H  L   +   ++ +L+ LE   
Sbjct: 237 IKPA-VRKKLESDREAAYHSRKLAQIVTDIPLAIDWDHYALTGFDEQEVLPWLEKLELQA 295

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
              +V                                    T++     SL   T++  +
Sbjct: 296 FRRQVDRLQQLFGGQP------------------------PTVEALSDESLDFWTAEETA 331

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTM 399
            Q P+   L+                 I     +   V  LE   S     ++   T  +
Sbjct: 332 AQQPRWPQLQP--------------QIITTAAALTDLVTLLEQRDSPEAIVAWDTETTDL 377

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D   ++ + I  +  ++ D  +      +I L         G+    + +L+ L+   E+
Sbjct: 378 DPRLAQLVGIGCAWGEEPDQLA------YIPLGHEE-----GEQLPLQTVLTALRPILES 426

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
           +   K   N K+D+L+L   GI + G   D ML SY+L+     H + ++A +WL    +
Sbjct: 427 DRHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNPSLG-HSLDALADRWLKLQTR 485

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMI 577
                      I +++ + V ++   + +V+ +L  LL+  +     L  + E ++ P+ 
Sbjct: 486 SYSDLVPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETVELPLE 545

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+++ME  GI+ID+  L ++S  +   L  LE   + L+G++FNL SPKQL ++LF KL
Sbjct: 546 AVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGDRFNLGSPKQLSELLFEKL 605

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
                   KT    +T   + +   GD+PII  ILE R L+K+KSTY D+LP+ +     
Sbjct: 606 GLNVKKSRKTKTGYSTDAAVLEKLQGDHPIIDLILEHRTLAKLKSTYVDALPSLVAADG- 664

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+HT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+      L +ADYSQIELRI
Sbjct: 665 RIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFLPREGWLLAAADYSQIELRI 724

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH+++   L + +    D+HR+ A+ +F  + E+++ + RR  K INF +IYG+   R 
Sbjct: 725 LAHLSQEPVLLEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIYGMGAQRF 782

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A +      EA  +I R++ R+P +  Y++  +      GYVET+ GRR ++D  ++   
Sbjct: 783 ARETGSSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGRRRYFDFEDTGLQ 842

Query: 878 SIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            +R  +                   RAA NAPIQGS+ADI + AM+ +   L+ ++   +
Sbjct: 843 KLRGSDPESIDLDKIRPSRFEAQLLRAAANAPIQGSSADIIKVAMVQLQALLQSYQ--AR 900

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           MLLQ+HDELV E+P EE  + +  I  +ME+A    + L VPL V +   +NW E 
Sbjct: 901 MLLQVHDELVLELPPEEWDSLAPQIQQTMEQA----VQLTVPLAVELHAGHNWMEA 952


>gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
 gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
          Length = 964

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/1016 (30%), Positives = 498/1016 (49%), Gaps = 105/1016 (10%)

Query: 1   MQKENHLFL-VDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  ++ L L VDG S  +R++YA         R   G+P +   GF   L ++++  + +
Sbjct: 12  MSVDSPLLLLVDGHSLAFRSYYAFAKGRDGGLRTRTGIPTSVCFGFLKALLEVMEQQQPK 71

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +     A+ FD    TFR+E   +YKANR + PE        +    Q   +P +   G+
Sbjct: 72  A----LAIAFDLGGPTFRHEADENYKANRDEAPEDFKIDTDNLVALLQTLNLPILVEPGY 127

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP----------TTCLYDTVKE--EKI 163
           EADD++ T      + G+ V I+S D+DL QLV P           T      +E   +I
Sbjct: 128 EADDLLGTVAQRGAEAGYRVRILSGDRDLFQLVDPEGAIRVLYLGNTFGRSANREAAREI 187

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D   VI K G+PPE+++  +AL GDS DNIPG+ GIG KTA  LLQ +G+L+ I  N   
Sbjct: 188 DPAAVIDKLGVPPEQVIDFKALCGDSSDNIPGVKGIGPKTAVDLLQAWGDLDRIYDNLEA 247

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           IK    R+ +    E A  SRKL  + TD+P+ I  +H  L   +   ++ +L+ LE   
Sbjct: 248 IKPA-VRKKLESDREAAYHSRKLAQIVTDIPLAIDWDHYALTGFDEQEVLPWLEKLELQA 306

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
              +V                                    T++     SL   T++  +
Sbjct: 307 FRRQVDRLQQLFGGQP------------------------PTVEALSDESLDFWTAEETA 342

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTM 399
            Q P+   L+                 I     +   V  LE   S     ++   T  +
Sbjct: 343 AQQPRWPQLQP--------------QIITTAAALTDLVTLLEQRDSPEAIVAWDTETTDL 388

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D   ++ + I  +  ++ D  +      +I L         G+    + +L+ L+   E+
Sbjct: 389 DPRLAQLVGIGCAWGEEPDQLA------YIPLGHEE-----GEQLPLQTVLTALRPILES 437

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
           +   K   N K+D+L+L   GI + G   D ML SY+L+     H + ++A +WL    +
Sbjct: 438 DRHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNPSLG-HSLDALADRWLKLQTR 496

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMI 577
                      I +++ + V ++   + +V+ +L  LL+  +     L  + E ++ P+ 
Sbjct: 497 SYSDLVPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETVELPLE 556

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+++ME  GI+ID+  L ++S  +   L  LE   + L+G++FNL SPKQL ++LF KL
Sbjct: 557 AVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGDRFNLGSPKQLSELLFEKL 616

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
                   KT    +T   + +   GD+PII  ILE   L+K+KSTY D+LP+ +     
Sbjct: 617 GLNVKKSRKTKTGYSTDAAVLEKLQGDHPIIDLILEHCTLAKLKSTYVDALPSLVAADG- 675

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+HT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+      L +ADYSQIELRI
Sbjct: 676 RIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFLPREGWLLAAADYSQIELRI 735

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH+++   L + +    D+HR+ A+ +F  + E+++ + RR  K INF +IYG+   R 
Sbjct: 736 LAHLSQEPVLLEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIYGMGAQRF 793

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A +      EA  +I R++ R+P +  Y++  +      GYVET+ GRR ++D  ++   
Sbjct: 794 ARETGSSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGRRRYFDFEDTGLQ 853

Query: 878 SIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            +R  +                   RAA NAPIQGS+ADI + AM+ +   L+ ++   +
Sbjct: 854 KLRGSDPESIDLDKIRPSRFEAQLLRAAANAPIQGSSADIIKVAMVQLQALLQSYQ--AR 911

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           MLLQ+HDELV E+P EE  + +  I  +ME+A    + L VPL V +   +NW E 
Sbjct: 912 MLLQVHDELVLELPPEEWDSLAPQIQQTMEQA----VQLTVPLAVELHAGHNWMEA 963


>gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28]
 gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28]
          Length = 890

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 490/982 (49%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 15  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 70  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK           
Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKK----------- 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 239 --------------------------------LKEKLEANKEQALMSKDLATIITDA--- 263

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 264 -PITVHVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 310

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 311 ----DDITFDIV--EEVTEEMLQQ-----DSALIVEVQEDNYHKADIQGFGIQNENGCYF 359

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                   T         K +  N    K   + K   + L   
Sbjct: 360 I----------------------QTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKWK 397

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 398 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 453

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 454 LEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 513

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 514 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 571

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 572 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 631

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 632 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIIYAADYSQIELRVLAHIANDKGLVEAFQH 691

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 692 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 751

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 752 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 811

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 812 GSAADIIKIAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 869

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 870 --IELAVPLKVDYSYGPTWYDA 889


>gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
 gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
          Length = 950

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/993 (33%), Positives = 521/993 (52%), Gaps = 60/993 (6%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M    +N + L+DGS +IYRA++A P L+    G PV  I G  NM+  LL   R     
Sbjct: 1   MTNIIDNPIILIDGSFYIYRAYHAYPPLTT-STGYPVWVIYGVINMIRSLLIKYR----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            H  ++FD P  TFRN+++  YK+NRP++PE L  Q+  +    +A GI A+ +   EAD
Sbjct: 56  IHMGIVFDSPGKTFRNDLFKQYKSNRPQMPEDLCIQITPLNTIIKAMGITALSVPYVEAD 115

Query: 119 DIIATYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           D+IAT +   A+ +   V I + DKD+ Q+VS    L +T+    +D   + KK+G+ P 
Sbjct: 116 DVIATLSNFYAQLKNKTVLISTGDKDMAQIVSSNIILINTMSNIILDSLEIKKKFGVSPN 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRE 231
            +    AL GD  DNIPG+PGIG K A +LL   GNL+ +  N  +I        +  + 
Sbjct: 176 LIADYLALIGDRSDNIPGVPGIGIKNAKILLNNIGNLQTLYQNLHKISILNLRNSQSIKN 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +++  + A LS KL  ++ DVP+      L++++ +  +L    K  EF   ++ +   
Sbjct: 236 TLIKNKKLAFLSYKLATVKIDVPLNQSDYKLLIQNIDSQQLFLLFKKYEFNTWVSELQAG 295

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                            T K+S  +S    TS I++  T    +
Sbjct: 296 TWLK-------------------------KYKNTKKSSTQNSQLSNTSLISNTITHTCNY 330

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                  +   I       I N   +  W+++  T       I ++  D F    I I I
Sbjct: 331 YPSFPSSNNNDI-------ISNISSLTNWIKQNNTHHCFILNIYSNNFDIFTPNIIGICI 383

Query: 412 ST--LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           ST  ++   +    +      L++  + D+        E+LS LK   EN    KIGHN+
Sbjct: 384 STYTMNSMHNAYIPINIQHT-LNIDNNNDTYQWYLNLTEVLSILKPILENIKIKKIGHNM 442

Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK--WLSYTRK--EILKSR 524
           K+   +L ++ I + G   D++L  YVL    +  +I     K   L +  K  +I  + 
Sbjct: 443 KFIFSLLKQHNIHLSGPIFDVILELYVLYGTSNYQNIKRFLNKTTILDHIFKFQQIYNNN 502

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQM 583
           K  I  +          + +    I  L  +L  ++    +L  ++  ++ P+I V+S++
Sbjct: 503 KYLIKKNIRDIQLESSCSTQLIYAISNLHQILWTEIKQHNELKKIFINIEIPLISVLSRI 562

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G+ ID+  L   S +++  L +L+   Y L+G  FNL SPKQL +IL+ + K P   
Sbjct: 563 EDYGVLIDKKFLYSHSIKLNSQLNNLKTQAYQLTGSSFNLDSPKQLQEILYNQEKLPIFK 622

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT  G   T+ + L++++   + I K IL++R LSK+KSTY + L + INK++ R+HT Y
Sbjct: 623 KTPHGAPSTSEEVLKKLS-KKHSIPKIILKYRSLSKLKSTYTNKLISMINKKSNRIHTSY 681

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           +   T TGRL+S  PNLQNIP +   G+KIR+AFI+P    +ISADYSQIELRI+AH+++
Sbjct: 682 NQTRTSTGRLSSTNPNLQNIPNRNYDGRKIRQAFIAPENSLIISADYSQIELRIMAHLSR 741

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F    DIH   A+EIF  ++  V+ + R+ AKT+NF +IYG++ F L+ QL +
Sbjct: 742 DLKLINDFLEEKDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLIYGMTAFGLSKQLSV 801

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              EA  Y+ RYF R+PG+ +Y++  K++ ++NGYV T+ GR+++  +I S   S +   
Sbjct: 802 TCQEAQKYVDRYFQRYPGVMQYMQYIKDYAKKNGYVSTLDGRKLYLPDIYSSNISQKKGA 861

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER+AINAP+QGSAADI +RAMIS+   L+   +   M++Q+HDELVFEV    +  A + 
Sbjct: 862 ERSAINAPMQGSAADIIKRAMISIDSWLQTDNIPVHMIMQVHDELVFEVNNTFVDIAVKQ 921

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           I   ME+  +    L VPLKV+I V  NW++ +
Sbjct: 922 IRKLMEECFI----LNVPLKVDIGVGKNWEQAH 950


>gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3]
 gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3]
          Length = 890

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 490/982 (49%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 15  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 70  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK           
Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKK----------- 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 239 --------------------------------LKEKLEANKEQALMSKDLATIITDA--- 263

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 264 -PITVHVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 310

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  I     +   +      I   +    
Sbjct: 311 ----DDITFDIV--EEVTEEILQQ-----DSALIIEVQEDNYHKADIQGFGIQNENGCYF 359

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                   T         K +  N    K   + K   + L   
Sbjct: 360 I----------------------QTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKWK 397

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 398 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 453

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 454 LEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 513

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 514 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 571

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 572 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 631

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 632 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 691

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 692 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 751

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 752 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 811

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AMI +   LE+  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 812 GSAADIIKIAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 869

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 870 --IELAVPLKVDYSYGPTWYDA 889


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/981 (34%), Positives = 529/981 (53%), Gaps = 117/981 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  LFL+DGSS ++RAFYA P   +  DG   N + GF  ML +L++    +S    
Sbjct: 1   MEDKKELFLLDGSSLLHRAFYALPESLQTSDGEYTNGVFGFTKMLLRLIEEEDPDS---- 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+E Y +YKANR + P+ L PQ  L++   +AF IP +E++G+EADDI
Sbjct: 57  LAVAFDLAGPTFRHEEYEEYKANRKETPDKLKPQFGLMKEVLEAFRIPVVELEGYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP 176
           I T    AE+EG+ VTI++ D+D +QLV+  T +  T +        D+E V +++ + P
Sbjct: 117 IGTLARQAEEEGYQVTIVTGDRDALQLVTEQTKIRYTKRGITNIVDYDLEKVEEEYELEP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            K++  + L GD  DNIPG+ GIG KT+  LL ++G+LE +L N  ++  KKR++ + E 
Sbjct: 177 RKLIDKKGLMGDKSDNIPGVDGIGKKTSTKLLHQFGSLEEVLDNIDQVSGKKRKQTLKEQ 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+ AR+S+KL      + + +P+      +C+                       +  + 
Sbjct: 237 ADRARMSKKLAT----IKLDVPI------ECDLDE--------------------FKLEE 266

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            + E ++  ++  E   +  E        +                              
Sbjct: 267 PDQEKLINILSRLEFNSLLKEFGGHETLNLTGG--------------------------- 299

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      +  I +  +I + +  L+ + S  FK    +   +  K   + +++ ++
Sbjct: 300 -----------FEVITDLTEIDRVLSMLDEVESFGFKFNFASTKLYQQKVEGLTVASDEE 348

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                      +ID S          +    E++  L+ +FE+    K+  N K + + L
Sbjct: 349 ---------ACYIDTS----------DLDLAELIDKLQPYFEDYELNKLSLNTKENLIYL 389

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G+ ++G   D +L  Y+L       D+ SI    L     E+ K+            
Sbjct: 390 KEQGVEVKGISFDPLLADYLLRPSAKEQDLESILTDQLQM---ELEKT------------ 434

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               E  ++   ++ +L   L  KL  + L+ ++  ++ P+I +++QME+ GI +DQD++
Sbjct: 435 ESEAETEVQQVRILFKLQDKLTDKLADKGLMELFIDVELPLIPILAQMELNGIAVDQDMI 494

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +++S ++ + L SL    Y+L+GE+FNL+SPKQLG+ILF KL  P   +TKTG   +T+ 
Sbjct: 495 QELSNKLEEKLDSLRSRAYELAGEEFNLNSPKQLGEILFEKLGLPVIKRTKTGY--STSA 552

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            + +     + I+  ILE+R+  K+KSTY D LP+ IN +T+R+HT ++   T TGRL+S
Sbjct: 553 SVLEKLEDKHEIVPLILEYRKYQKLKSTYVDPLPDLINPKTERIHTSFNQLVTATGRLSS 612

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIPI+T+ G++IR+ F++   K+L++ DYSQIELR+LAHI++   L   +    
Sbjct: 613 TEPNLQNIPIRTEEGRRIRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQ 672

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   AAE+FG+   +VS Q RR AK INF I YGISP+ LA  + + + EA DYI +Y
Sbjct: 673 DIHTKTAAEVFGLEASEVSYQQRRRAKAINFGIAYGISPWGLAKDINVSKQEAEDYINQY 732

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
            +R+P + EY++      ++ GYV TI  RR +  EINS     R+  ER AIN PIQGS
Sbjct: 733 LNRYPKVKEYMDHQIKQAKEEGYVTTILNRRRYLPEINSSNYHRRSFGERMAINTPIQGS 792

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+   + L++ +L TK+LLQ+HDEL+FEVP EE+    Q+I   ME      
Sbjct: 793 AADIMKLAMLESARVLDERELDTKILLQVHDELIFEVPPEELEEVQQVIKAEMEDV---- 848

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           I L VPLKV++KV +NW++ N
Sbjct: 849 IELDVPLKVDLKVGSNWRDMN 869


>gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
 gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
          Length = 907

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/988 (30%), Positives = 503/988 (50%), Gaps = 103/988 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG S + RAF+  P L+   +GL  NA+ GF N+L+K+L+  +      +  V F
Sbjct: 4   KLVLIDGHSILNRAFFGIPDLTN-SEGLHTNAVYGFLNILFKILEEEQPN----YLTVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++Y +YK  R  + E L  Q+PL++   +A G+  +E  G+EADDI+ T  
Sbjct: 59  DVSQPTFRHKMYAEYKGTRKPMAEELREQVPLMKEMLKAMGVTIVEKGGYEADDILGTIA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
             +E EG  V+++S D+DL+QL +    +     +      E  + + V+ K+ + P + 
Sbjct: 119 KRSEAEGLEVSVVSGDRDLLQLATDHIKIRIPKTKRTGTEIEDYNTKEVLDKYHVTPIEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PGIG KTA  L+ +YG++EN   +   IK  +  +N+ E  E 
Sbjct: 179 IDVKALMGDTSDNIPGVPGIGEKTATALIAQYGSIENCYAHVDEIKPPRASKNLKENYEL 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A++S+ L  +     I   L+   LE   D          K LEF  ++ R    ++ DA
Sbjct: 239 AQMSKTLATIEIHADIDYDLQSARLEQIKDLYTEEAYLLCKRLEFKNMLGR----FEVDA 294

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +        TE K                                        E  +
Sbjct: 295 PKNQAEEHFKLVTEKK----------------------------------------EAEK 314

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             ++      ++  I   +     +     +   +            ++ + +A+   + 
Sbjct: 315 IFAKIKGIECAFQIIPMEEKKDANMDAGGQMNLFA--------APQTNEFLGMAVCFGE- 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           KD   FK                     LT  +LS L     +E    +  ++K    +L
Sbjct: 366 KDTYFFK-----------------AGEELTSSVLSDL--LTHSEAAGYMTLDLKPQLGLL 406

Query: 477 H------RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527
           H         ++ +   D ++ +Y+L+  ++ +    IA+ + S     R ++L      
Sbjct: 407 HMIEQRENGCLNQKNIFDNVIAAYLLNPLKNEYPYEDIAKDYCSLMIPSRVDLLGKSGYD 466

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           + +D+       +     +         +  +L    +  +YE ++ P++  ++ ME TG
Sbjct: 467 LAMDEKP-EGFLKTVCFMAYTAFSSKKAMMEELKATGMEQLYETIEMPLVFTLADMEHTG 525

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I ID   LK+   +++  +  LE  IY  +GE+FN++SPKQLG ILF KL+ P G KTKT
Sbjct: 526 IAIDAANLKEYGEKLAVRIKELETRIYQEAGEEFNINSPKQLGVILFEKLEMPYGKKTKT 585

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+      + PI+ +ILE+RQL+K+KSTYAD L N+I +   R+HT ++   
Sbjct: 586 GY--STAADVLDKLAPEYPIVADILEYRQLTKLKSTYADGLANYIKEDG-RIHTSFNQTI 642

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T+TGRL+S EPNLQNIP++ +LG+ IR+AF+       + ADYSQIELR+LAH++    L
Sbjct: 643 TVTGRLSSTEPNLQNIPMRIELGRLIRKAFLPAKGCVFMDADYSQIELRVLAHMSGDEKL 702

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + +  + DIHR+ A+++F +  ++V+   RR+AK +NF I+YGIS F L+  L I + E
Sbjct: 703 IEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKKE 762

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA+YI+RYF  +P I  +++      ++NGYV T+FGRR    E++S     R+  ER A
Sbjct: 763 AAEYIERYFETYPKIKTFLDGLVEDAKKNGYVTTMFGRRRPVPELSSSNFMQRSFGERVA 822

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQG+AADI + AMI VH  L +  L +++++ +HDEL+ E  E+EI    +I+   
Sbjct: 823 MNAPIQGTAADIIKIAMIRVHDRLLEEHLKSRLIITVHDELLIETAEDEIDRVKEILTEG 882

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEE 975
           M++A     +L+V L +++    NW E 
Sbjct: 883 MQQAA----DLKVALAIDLHTGKNWYEA 906


>gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05]
          Length = 970

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1010 (32%), Positives = 506/1010 (50%), Gaps = 97/1010 (9%)

Query: 10  VDGSSFIYRAFYATPLLSR----KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           +DG S  +RA+YA     R       G+P +   GF N L ++++  + E    + A+ F
Sbjct: 13  IDGHSLAFRAYYAFAKARRGPLRTSTGIPTSICFGFLNSLIQVIKLEKPE----YIAIAF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E   +YKA+R + PE  +P +  ++   +A  I  I   G+EADDI+ T  
Sbjct: 69  DSSEPTFRHEADVNYKADRKETPEDFIPDIQNLQRLLEALNITIITAPGYEADDILGTVA 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT---------TCLYDTVKEEKIDI---EHVIKKWG 173
               + G+ V I++ D+DL QLV+                +   E       + V +K G
Sbjct: 129 NRGTENGYRVKIVTGDRDLFQLVNDQNNLSVLYLERNAVRSSSGEGYTEFKFDDVTEKMG 188

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++  +AL GD  DNIPGI GIG KTA  LL EY  LE +  N   IK   +++  
Sbjct: 189 IKPTQVIDYKALCGDKSDNIPGIRGIGDKTAVKLLNEYETLEEVYNNIEAIKGANKKKLK 248

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  + TD P+   +E+  L+  N   +   L+ LE  K +  +    +
Sbjct: 249 EGKKEAEH-SQFLAKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQE 307

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
               NI              +    +IDR  T + S F S S Q   +N  +  +K  L 
Sbjct: 308 HFGGNI-------------TLEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEKKESLI 354

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHSKPIAI 409
           +                I   + +++ V KL T  +     ++   T  ++   ++ + I
Sbjct: 355 KP-------------QIITEIEQLEELVNKLVTYTNGNIPVAWDTETTALNPREAELVGI 401

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
                ++  D +      +I ++        GK    +++L  L+   E+ ++ K+  N 
Sbjct: 402 GCCWGNKPTDIA------YIPIAHKQ-----GKQLRKEQVLDRLQSILESNNYPKVFQNT 450

Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILKSR 524
           K+D+L+    GI++ G   D ML SYVL   +S H ++ + +++L    S   K++   +
Sbjct: 451 KFDRLIFKHQGINLDGVVLDTMLASYVLHPEKS-HKLSELCEQYLEGITSLDYKDLGIGK 509

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQM 583
           K    I  +    V E+   ++     L   L+ +L  +  L  +   +++P+  V++ M
Sbjct: 510 KQ--TIADLDIETVAEYCGMDAYATFLLVEPLKNELKTLSTLDKLLLEVEQPLEPVLAIM 567

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TGI ID + L ++S E+ ++LLSLEEN Y  +GEKFNL SPKQLG ILF KL+     
Sbjct: 568 EDTGIIIDSEYLGKLSKELEQHLLSLEENAYQAAGEKFNLGSPKQLGHILFEKLELNRKK 627

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
             KT    +T     +   GD+PII  ILE+R LSK+KSTY D+LP  ++K  QR+HT +
Sbjct: 628 SRKTKTGYSTDHATLEKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVDKIDQRIHTNF 687

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           + + T TGRL+S  PNLQNIPI+T+  ++IR+AFI      L+SADYSQIELRILAH+++
Sbjct: 688 NQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQQDWLLVSADYSQIELRILAHLSQ 747

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   ++N+ D+H + A  +F  + E+++PQ R   KTINF +IYG+   R A +  +
Sbjct: 748 EQVLLNAYKNADDVHSVTARLLF--DKEEITPQERTLGKTINFGVIYGMGSQRFAREAGV 805

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              E  ++I +Y  R+  + +Y+E  K     NGYV TI GRR +++  +      R  +
Sbjct: 806 SAVEGKEFINKYRQRYAKVFDYLESMKKEAIANGYVTTILGRRRYFNFFDDNLYRFRGHD 865

Query: 884 E------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
                              RAA NAPIQGS+ADI + AM+ + + L+       +LLQ+H
Sbjct: 866 PQNIDLNKININYNDSQLLRAAANAPIQGSSADIIKIAMVKIQEILD--NYQANLLLQVH 923

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           DELVFE+P +E       I  +ME A    + L VPL V I    NW E 
Sbjct: 924 DELVFEIPHQEWEELEDKIKETMENA----VTLTVPLVVEINTGKNWMEA 969


>gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29]
 gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29]
          Length = 890

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/982 (30%), Positives = 490/982 (49%), Gaps = 117/982 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 15  EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ Y +YK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 70  AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++GF V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  N  ++  KK           
Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKK----------- 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+A +   L+++   T   DA   
Sbjct: 239 --------------------------------LKEKLEANKEQALMSKDLATIITDA--- 263

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + ++  E KG      I      +   F+SL ++      E  P +L         
Sbjct: 264 -PITVHVDDMEYKGYEASDVIPM---FENLGFTSLLNKLGVTPEETAPAEL--------- 310

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               ++ ++  +   +  ++ +Q+      ++  +     +   +      I   +    
Sbjct: 311 ----DDITFDIV--EEVTEEILQQ-----DSALIVEVQEDNYHKADIQGFGIQNENGCYF 359

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                   T         K +  N    K   + K   + L   
Sbjct: 360 I----------------------QTDIALASEAFKAWLANGEMRKRTFDAKRAIVALKWK 397

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI ++G + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P     
Sbjct: 398 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVP----E 453

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V EH     +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + 
Sbjct: 454 LEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 513

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L  +E+ IY L+G +FN++SPKQLG ILF  L  P   KTKTG   +T+
Sbjct: 514 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTGY--STS 571

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+       + II NIL +RQL K+ STY + L   +++ + ++HT ++   T TGRL+
Sbjct: 572 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 631

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F++
Sbjct: 632 STDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQH 691

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  AA++I+
Sbjct: 692 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 751

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   FPG+ EY++      +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQ
Sbjct: 752 KYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 811

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AMI +   L++  L  ++LLQ+HDEL+FE P+EEI    +++   ME A  
Sbjct: 812 GSAADIIKIAMIIMADRLDEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA-- 869

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPLKV+      W + 
Sbjct: 870 --IELAVPLKVDYSYGPTWYDA 889


>gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
 gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
          Length = 956

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/1016 (29%), Positives = 493/1016 (48%), Gaps = 108/1016 (10%)

Query: 2   QKENHLF-LVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
            ++N LF L+DG S  +RA+YA         R   G+P +   GF N L +LL+  +   
Sbjct: 4   TEQNKLFILIDGHSLAFRAYYAFAKSRSGPLRTSTGIPTSVCFGFLNSLMQLLETQK--- 60

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             ++ AV FD  A +FR+E   +YKANR + PE   P L  ++    A  IP +   G+E
Sbjct: 61  -PTYLAVAFDLAAPSFRHEADANYKANRQETPEEFRPDLTNLQSLLAAMNIPIVTSPGYE 119

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---------TTCLYDTVKEEKIDI-- 165
           ADD++ T    A   G+ V I++ D+DL QLV                 +   +      
Sbjct: 120 ADDVLGTLAKQAGDHGYTVKILTGDRDLFQLVDEEKKTTVLYLDINAVKSTSGQGYTEFN 179

Query: 166 -EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            + V +K G+ P+++V  +AL GD  DNIPG+ GIG KTA  LL++Y NL++I  N   I
Sbjct: 180 SQAVTEKLGVTPKQVVDFKALCGDKSDNIPGVRGIGEKTAIDLLKKYDNLDDIYTNLESI 239

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           K    +  +LE    A  SR L  +  D P+++  E   L   N   +   L  LE  K+
Sbjct: 240 KGM-VKTKLLEGKTAAESSRYLAKIALDAPVSLEEEKFRLRGFNRRLVQPLLARLELKKI 298

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           + ++                       + +     ++  +   ++Q S            
Sbjct: 299 LQKLDQI-------------------QQHLGGTPTLELTSDADSNQLSLFDLPPISPPVL 339

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF----KIITDTMD 400
             P                       I     +   + KL T  +  F       T  ++
Sbjct: 340 IAPD---------------------IIDTIPKLDALLAKLTTFTNPHFPVAWDTETTDLN 378

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
              +K + I      + +         +I +   +     G N   + +L  L+    ++
Sbjct: 379 PRVAKLVGIGCCWGKELNA------MAYIPIGHQS-----GDNLNLEIVLEKLRPILASD 427

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
            + K+  N K+D  V +  GI+++G   D M+ SYVL     +H++  +  ++L+     
Sbjct: 428 DYPKVFQNAKFDIDVFYHQGITVKGLVFDTMVASYVLHP-ELTHNLEDLCDRYLTGITSL 486

Query: 520 ILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPM 576
             KS    +   I  +       +   ++     L   L+ +L  +  L  ++  ++ P+
Sbjct: 487 SYKSLGIPAGKTIADLDIPTTANYCGLDAYATYLLREKLQAELTKIPPLYQLFSEIESPL 546

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+ QME  GI+I+ + LK  S ++ ++L  +E+N Y+  GE FNLSSPKQL +ILF +
Sbjct: 547 VMVLWQMENYGIKININYLKNFSQQLERDLAYIEKNAYESIGETFNLSSPKQLSEILFDR 606

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L        KT    +T Q + +   GD+P++  ILE R LSK+KSTY D+LP     +T
Sbjct: 607 LALNRKKSRKTKTGYSTDQSVLEKLQGDHPLVDYILEHRTLSKLKSTYVDALPKLAEPKT 666

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT ++   T TGRL+S  PNLQNIPI+++  ++IR+AFI      L+SADYSQIELR
Sbjct: 667 ARVHTDFNQTITSTGRLSSSNPNLQNIPIRSEFSRRIRQAFIPENGYLLVSADYSQIELR 726

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ILAH+++   L + + ++ D+H++ A  +F  +  +++P+ R   KTINF +IYG+   +
Sbjct: 727 ILAHLSQEPVLLEAYRSNQDVHKVTAQLLF--DKREITPEERSLGKTINFGVIYGMGAQK 784

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            A + ++   +   +I++Y  R+  + EY+E +K      GYVETI GRR +++  N   
Sbjct: 785 FARESKLTVEQGRKFIEKYHQRYAQVFEYLENSKKQAITQGYVETILGRRRYFNFDNPLL 844

Query: 877 SSIRNIN------------------ERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
             +R ++                   R+A NAPIQGS+ADI + AM+ + + L+      
Sbjct: 845 KRLRGLSLHDIDLDSLKLNNEEAQLLRSAANAPIQGSSADIIKVAMVKLAEVLQ--NYRA 902

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           ++LLQ+HDELV EVP EE  +    I  +ME+A    ++L +PL V IK  +NW E
Sbjct: 903 RLLLQVHDELVLEVPREEWPSLESKIKTTMEEA----VSLTIPLLVEIKAGDNWME 954


>gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
 gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
          Length = 970

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1010 (31%), Positives = 505/1010 (50%), Gaps = 97/1010 (9%)

Query: 10  VDGSSFIYRAFYATPLLSR----KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           +DG S  +RA+YA     R       G+P +   GF N L ++++  + E    + A+ F
Sbjct: 13  IDGHSLAFRAYYAFAKARRGPLRTSTGIPTSICFGFLNSLIQVIKLEKPE----YIAIAF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E   +YKA+R + PE  +P +  ++   +A  I  I   G+EADDI+ T  
Sbjct: 69  DSSEPTFRHEADVNYKADRKETPEDFIPDIQNLQRLLEALNITIITAPGYEADDILGTVA 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT---------TCLYDTVKEEKIDI---EHVIKKWG 173
               + G+ V I++ D+DL QLV+                +   E       + V +K G
Sbjct: 129 NRGTENGYRVKIVTGDRDLFQLVNDQNNLSVLYLERNAVRSSSGEGYTEFKFDDVTEKMG 188

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++  +AL GD  DNIPGI GIG KTA  LL EY  L+ +  N   IK   +++  
Sbjct: 189 IKPTQVIDYKALCGDKSDNIPGIRGIGDKTAVKLLNEYETLDEVYNNIEAIKGANKKKLK 248

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               E    S+ L  + TD P+   +E+  L+  N   +   L+ LE  K +  +    +
Sbjct: 249 EGKKEAEH-SQFLAKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQE 307

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
               NI              +    +IDR  T + S F S S Q   +N  +  +K  L 
Sbjct: 308 HFGGNI-------------TLEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEKKESLI 354

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFHSKPIAI 409
           +                I   + +++ V KL T  +     ++   T  ++   ++ + I
Sbjct: 355 KP-------------QIITEIEQLEELVNKLVTYTNGNIPVAWDTETTALNPREAELVGI 401

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
                ++  D +      +I ++        GK    +++   L+   E+ ++ K+  N 
Sbjct: 402 GCCWGNKPTDIA------YIPIAHKQ-----GKQLRKEQVFDRLQSILESNNYPKVFQNT 450

Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILKSR 524
           K+D+L+    GI++ G   D ML SYVL   +S H ++ + +++L    S   K++   +
Sbjct: 451 KFDRLIFKHQGINLDGVVLDTMLASYVLHPEKS-HKLSELCEQYLEGITSLDYKDLGIGK 509

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQM 583
           K    I  +    V E+   ++     L   L+ +L  +  L  +   +++P+  V++ M
Sbjct: 510 KQ--TIADLDIETVAEYCGMDAYATFLLVEPLKNELKPLSTLDKLLLEVEQPLEPVLAIM 567

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E TGI ID + L ++S E+ ++LLSLEEN Y  +GEKFNL SPKQLG ILF KL+     
Sbjct: 568 EDTGIIIDSEYLGKLSKELEQHLLSLEENAYQAAGEKFNLGSPKQLGHILFEKLELNRKK 627

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
             KT    +T     +   GD+PII  ILE+R LSK+KSTY D+LP  ++K  QR+HT +
Sbjct: 628 SRKTKTGYSTDHATLEKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVDKIDQRIHTNF 687

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           + + T TGRL+S  PNLQNIPI+T+  ++IR+AFI      L+SADYSQIELRILAH+++
Sbjct: 688 NQSVTATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQQDWLLVSADYSQIELRILAHLSQ 747

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   ++N+ D+H + A  +F  + E+++PQ R   KTINF +IYG+   R A +  +
Sbjct: 748 EQVLLNAYKNADDVHSVTARLLF--DKEEITPQERTLGKTINFGVIYGMGSQRFAREAGV 805

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              E  ++I +Y  R+  + +Y+E  K     NGYV TI GRR +++  +      R  +
Sbjct: 806 SAVEGKEFINKYRQRYAKVFDYLESMKKEAIANGYVTTILGRRRYFNFFDDNLYRFRGHD 865

Query: 884 E------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
                              RAA NAPIQGS+ADI + AM+ + + L+       +LLQ+H
Sbjct: 866 PQNIDLNKININYNDSQLLRAAANAPIQGSSADIIKIAMVKIQEILD--NYQANLLLQVH 923

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           DELVFE+P +E       I  +ME A    + L VPL V I    NW E 
Sbjct: 924 DELVFEIPHQEWEELEDKIKETMENA----VTLTVPLVVEINTGKNWMEA 969


>gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/982 (33%), Positives = 503/982 (51%), Gaps = 118/982 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   +     +H  V
Sbjct: 2   KNKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEQ----PTHILV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + DYK  R + P  L  Q PL+R   +A+ IPA E+  +EADDII T
Sbjct: 57  AFDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGFAV +IS D+DL QL SP   +  T K     E    E V++K+G+ PE++
Sbjct: 117 MAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK              
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG------------- 223

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++       DA   
Sbjct: 224 ------------------------------EKLKENLRQYRDLALLSKQLAAICRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L ++    KG   E  +      +   F S  D+ +    E               
Sbjct: 251 -PVELTLDDIVYKGEDREKVV---ALFQELGFQSFLDKMAVQTDEGE-----------KP 295

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              ++      + +     +          A+  +     +  H+  + IA++    +  
Sbjct: 296 LAGMDFAIADSVTDEMLADK----------AALVVEVVGDNYHHAPIVGIALANERGR-- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                     T         +  +E   K   + K   + L   
Sbjct: 344 --------------------FFLRPETALADPKFLAWLGDETKKKTMFDSKRAAVALKWK 383

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+LD  +++ D+A++A+               K  K ++P     
Sbjct: 384 GIELRGVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKRTVP----D 439

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +  + EH +  +  I  L   L  +L   +   +   L++P+  +++ ME TG+++D   
Sbjct: 440 EPTLAEHLVRKAAAIWALEEPLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKR 499

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+Q+ AE+++ L ++E  IY+L+G++FN++SPKQLG +LF KL+ P   KTKTG   +T+
Sbjct: 500 LEQMGAELTEQLQAVERRIYELAGQEFNINSPKQLGTVLFDKLQLPVLKKTKTGY--STS 557

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     + I+++IL +RQL K++STY + L   ++  T +VHT ++ A T TGRL+
Sbjct: 558 ADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLS 617

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S+EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA+   L + F  
Sbjct: 618 SVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRR 677

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IF V+ E V+  MRR AK +NF I+YGIS + LA  L I R EAA++I+
Sbjct: 678 GLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIE 737

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+ +Y++      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 738 RYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQ 797

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   L + +L  ++LLQ+HDEL+ E P+EEI    +++   ME+A  
Sbjct: 798 GSAADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQA-- 855

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + LRVPLKV+      W + 
Sbjct: 856 --VTLRVPLKVDYHYGPTWYDA 875


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/982 (33%), Positives = 502/982 (51%), Gaps = 118/982 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   +     +H  V
Sbjct: 2   KNKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEQ----PTHILV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + DYK  R + P  L  Q PL+R   +A+ IPA E+  +EADDII T
Sbjct: 57  AFDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGFAV +IS D+DL QL SP   +  T K     E    E V++K+G+ PE++
Sbjct: 117 MAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK              
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG------------- 223

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++       DA   
Sbjct: 224 ------------------------------EKLKENLRQYRDLALLSKQLAAICRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L ++    KG   E  +      +   F S  D+ +    E               
Sbjct: 251 -PVELTLDDIVYKGEDREKVV---ALFQELGFQSFLDKMAVQTDEGE-----------KP 295

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              ++      + +     +          A+  +     +  H+  + IA++    +  
Sbjct: 296 LAGMDFAIADSVTDEMLADK----------AALVVEVVGDNYHHAPIVGIALANERGR-- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                     T         +  +E   K   + K   + L   
Sbjct: 344 --------------------FFLRPETALADPKFLAWLGDETKKKTMFDSKRAAVALKWK 383

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKIS 534
           GI +RG   D++L +Y+LD  +++ D+A++A+               K  K ++P     
Sbjct: 384 GIELRGVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKRTVP----D 439

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +  + EH    +  I  L   L  +L   +   +   L++P+  +++ ME TG+++D   
Sbjct: 440 EPTLAEHLARKAAAIWALEEPLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKR 499

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+Q+ AE+++ L ++E  IY+L+G++FN++SPKQLG +LF KL+ P   KTKTG   +T+
Sbjct: 500 LEQMGAELTEQLQAVERRIYELAGQEFNINSPKQLGTVLFDKLQLPVLKKTKTGY--STS 557

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     + I+++IL +RQL K++STY + L   ++  T +VHT ++ A T TGRL+
Sbjct: 558 ADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLS 617

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S+EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA+   L + F  
Sbjct: 618 SVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRR 677

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IF V+ E V+  MRR AK +NF I+YGIS + LA  L I R EAA++I+
Sbjct: 678 GLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIE 737

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+ +Y++      +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 738 RYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQ 797

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +   L + +L  ++LLQ+HDEL+ E P+EEI    +++   ME+A  
Sbjct: 798 GSAADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQA-- 855

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + LRVPLKV+      W + 
Sbjct: 856 --VALRVPLKVDYHYGPTWYDA 875


>gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5]
 gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5]
          Length = 881

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/975 (32%), Positives = 481/975 (49%), Gaps = 99/975 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDG+SFIY+AFYA   LS +  GLP NAI GF N+L K       +       V+F
Sbjct: 2   KLLLVDGNSFIYKAFYAIRGLSNRA-GLPTNAIYGFRNILEKCHNAIEPDG----IVVVF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+E YP YKA R K PE L+ Q+P +    +A G+  + I+GFEADD+I T T
Sbjct: 57  DAPGPTFRHESYPQYKAQRQKAPEDLISQIPWIHRLVEAQGLKRLCIEGFEADDVIGTIT 116

Query: 126 YIAEKEGF-AVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             A+  G+  V I ++DKDL QL++ P   LYDT KE  +D      K G+ P +++   
Sbjct: 117 CQAQDAGYREVYIATSDKDLGQLLTKPGVFLYDTSKERILDAAAFHDKMGVTPAQVIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPG+ GIG K+A  LL++YG L+NI  +   I                   
Sbjct: 177 ALVGDASDNIPGVKGIGPKSAQKLLEQYGTLDNIYAHVDEISGAVG-------------- 222

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           ++L   R D  ++  L  L             L   +F   +  V   Y+          
Sbjct: 223 KRLQEFRDDAFLSRRLLELHTSVP--------LDDSDFRPGVPNVPELYEI--------- 265

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                                      F  L D            KL  +     +    
Sbjct: 266 ----------------------YSELGFQGLRD------------KLNYQVDAPPAAAVA 291

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            +         +   + + +  T    +    T +  A  +  + I+I+  +Q       
Sbjct: 292 TDIDVRIADTAEAFAELLHEAATAAVIAIDTETTSEHAVEADLVGISIAIGEQ--AWYVP 349

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           ++    D         T +N  T ++   L    +    L +G NIKYD +VL R+ +++
Sbjct: 350 IDHAHTD---------THRNMPTADV-QKLITALDRSDLLLVGQNIKYDLIVLQRHDMAL 399

Query: 484 R--GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
                 D M+ SY+LD+ R SH +  +A ++LS+                 +       +
Sbjct: 400 PQPRLFDTMIASYLLDANRRSHGLDQLAVEFLSHEMIAFKDVVPKGSTFRDVDIPTAARY 459

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L L+ L  P++  E    ++  ++ P++ V+  ME+ GI +D+++L  +   
Sbjct: 460 AGEDAAITLALYNLFAPRIEQE-YHELFHAIEMPLVRVLCHMEMLGIAVDREMLGNLHES 518

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            ++ L  LEE IY+L+GE FN++SPKQL  +LF K+  P   KTKTG   +T   + +  
Sbjct: 519 FTRRLHELEEKIYELAGEAFNINSPKQLATLLFEKMGIPPVKKTKTGY--STDVSVLEAL 576

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   + ++R +SK+ STY ++L   IN  T R+HT ++     TGRL+S +PNLQ
Sbjct: 577 APQYEIANVLTQYRMVSKLLSTYVNALSELINPWTGRIHTSFNQTVANTGRLSSSDPNLQ 636

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+T+ G+++R+AF+  P    ++ADYSQIELRI AH++    + + F    DIH   
Sbjct: 637 NIPIRTEEGREVRKAFVPAPGFCFVAADYSQIELRIAAHLSGDESMLKSFAEEKDIHAQT 696

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A  IFG +     P  RR AK +NF I+YGIS F+L+  L +   E    I  YF R+PG
Sbjct: 697 ADAIFGSSE----PNYRRMAKAVNFGILYGISAFKLSRDLGMTPKEGQALIDSYFLRYPG 752

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  YI+    F R++GY +T++GRR +  +INS   +IR   ER A+N PIQG++ADI +
Sbjct: 753 VKAYIDHQIAFAREHGYAQTLYGRRRYLPDINSRNRNIREAAERNAVNMPIQGTSADIIK 812

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AM  +H+ L       +MLLQIHDEL+FEVP E+    S  +   ME A      L+V 
Sbjct: 813 IAMNRIHQQL--APYQARMLLQIHDELLFEVPFEQAEPFSAFLQEQMESAA----QLKVR 866

Query: 962 LKVNIKVSNNWQEEN 976
           L V +   NNW + +
Sbjct: 867 LTVTVSSGNNWNDVH 881


>gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109]
 gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109]
          Length = 986

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1020 (29%), Positives = 480/1020 (47%), Gaps = 95/1020 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R+FYA            DG P +   GF   L     ++ K       A
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATKDGRPTSVTYGFLKALL----DNSKTLKPEGVA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ-AFGIPAIEIQGFEADDII 121
           + FD    TFR++   +YKA+R   PE+    L  ++   +    +P     GFEADD++
Sbjct: 66  IAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLEQLQQILETHLQLPLCMAPGFEADDVL 125

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIEHVIKK 171
            T    A   G+ V I+S D+DL QLV  +               +     I  E V+ K
Sbjct: 126 GTLANRAADSGWGVRILSGDRDLFQLVDDSRDIAVLYMGGGPYAKSSGPTLIHEEGVLGK 185

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ----- 226
            G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL++  +L+ +     +++      
Sbjct: 186 LGVMPNKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNSDLDAVYATLEQVEAEGPKA 245

Query: 227 ------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
                    +E +    + A LSRKL  +  DVP+      L L   +   L S L+ LE
Sbjct: 246 SRGAIKGALKEKLRADRDNAYLSRKLAEILVDVPLPKEP-SLPLSSVDADGLSSCLEDLE 304

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
              L+ +V +                                +     +  ++ +    +
Sbjct: 305 LNSLLRQVGS--------------------------FVAAFSEGGYGANAEAAAAKTPRR 338

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIIT 396
             S + P               +       I    D+   VQ+L          +F   T
Sbjct: 339 SASSEQPAAEAASAAATQEDVGLPALKPQLIQTETDLDALVQRLMACTDSGLPVAFDTET 398

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
             ++ F ++ + I I   +  D  +      +I L    ++DS+ +    + +L+ L  +
Sbjct: 399 TDLNPFRAELVGIGICWGETLDALA------YIPLGHKGNEDSSPEQLPLETVLTALAPW 452

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515
             + +  K   N KYD+L+L R+G+++ G   D +L  Y+ D+    H +  +A++   +
Sbjct: 453 LASSNHPKTLQNAKYDRLILLRHGVALEGVVIDTLLADYLRDAAA-KHGLELMAEREFGF 511

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLD 573
                            +       +   + +V  +L LLLR +L     +L+ + E+++
Sbjct: 512 QPTAFTDLVGKKQTFADVPLEPASLYCGMDVHVTRRLALLLRHQLEAMGPQLMPLLEQVE 571

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
           +P+  V+++ME TGI+ID   L+ +S E+   L  LE +    +G  FNL+SPKQLG++L
Sbjct: 572 QPLEPVLARMESTGIRIDVPYLQGLSEEMGSTLQQLESDAKAAAGVDFNLASPKQLGELL 631

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F  L        +T    +T   + +    D+P++  +LE R LSK+KSTY D+LP  + 
Sbjct: 632 FDTLGLDRKKSRRTKTGFSTDATVLEKLGNDHPVVPLVLEHRVLSKLKSTYIDALPQLVE 691

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+      L+SADYSQI
Sbjct: 692 AETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQI 751

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRIL H++    L + + +  D+H + A  +  ++  +VSP  RR  KTINF +IYG+ 
Sbjct: 752 ELRILTHLSGEEVLQEAYRSGDDVHALTARLL--LDKNEVSPDERRLGKTINFGVIYGMG 809

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             R A +  + +SEA +++ RY  R+P +  ++E  +      GYVETI GRR  +    
Sbjct: 810 AQRFARETGVSQSEAKEFLARYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFHFDR 869

Query: 874 ------------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                             + +  +     RAA NAPIQGS+ADI + AM+ +  +L+   
Sbjct: 870 NGLGRLLGKAPLEIDLNVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQDALQRQG 929

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L  ++LLQ+HDELV EV    +    +++V +ME+A    + L VPL V   V  NW E 
Sbjct: 930 LPAQLLLQVHDELVLEVAPNALDATRELVVQTMEQA----VALSVPLVVETGVGANWMEA 985


>gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
 gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
          Length = 879

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/985 (32%), Positives = 502/985 (50%), Gaps = 117/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDG+S  YRAF+A PLLS    G+  NAI GF  +L K+L++ +     +H
Sbjct: 1   MTDKKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAIYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q+P +R    A+ +   E+  +EADDI
Sbjct: 56  MLVAFDAGKTTFRHETFKEYKGGRQKTPPELSEQMPFIRELLDAYQVKRYELPQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK GF V I S DKDL QL +  T +  T K     E     H+ +K+G+ P
Sbjct: 116 IGTLAVEAEKNGFEVKIFSGDKDLTQLSTDHTTVAITKKGITEVEYYTPAHIEEKYGLRP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++ L GDS DNIPG+PG+G KTA  LL+++  +EN+L                E+
Sbjct: 176 DQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFETVENLL----------------EH 219

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +                           + NG +L   L+  +   ++++   T   +A
Sbjct: 220 ID---------------------------EVNGKKLKEKLEEYKEQAVMSKELATILVEA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ +       +G  ++  I   +  K   F +L ++  +        ++    ++
Sbjct: 253 ----PIDVSSKDLAYEGPHMDQVI---SLYKELGFQTLLERLGEAPETDEQVEVDALEVK 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           K++    +  +                      A+  +     +   +  I  AI     
Sbjct: 306 KMTAAGGDMLT--------------------DHAALVVEQLGDNYHEADLIGFAI----- 340

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                            H    +              K++ ++E   K   + K   + L
Sbjct: 341 -----------------HNENGAFFMTKEDALQSDAFKEWVQDETKKKWVFDSKRAVVAL 383

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE---ILKSRKSSIPID 531
             + + ++G + D++L SYV++  +S  D+AS+A+++ L+    +     K  K +IP  
Sbjct: 384 RWHDVDLKGVDNDVLLASYVVNPQKSYEDVASVAKEYGLNIALSDEKVYGKGAKQAIP-- 441

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              + +++ H    +  I  L  L    L       +YE L+ P+  ++ +ME  G+++D
Sbjct: 442 --PEDELKGHLGRKAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGVKVD 499

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+++  E++K L   EE I+ L+GE FN++SPKQLG ILF KL  P   KTKTG   
Sbjct: 500 LKRLEKMGEELTKKLKEYEETIHRLAGETFNINSPKQLGVILFEKLGLPIIKKTKTGY-- 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + II++IL +RQ+ K++STY + L     K T +VHT ++ A T TG
Sbjct: 558 STSADVLEKLEDKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTG 617

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI++   L + 
Sbjct: 618 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELRVLAHISQDENLIEA 677

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   +DIH   A ++F V+ E+V+  MRR AK +NF I+YGIS + L+  L I R EAA 
Sbjct: 678 FTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAA 737

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RY   F G+  Y+E+     +Q GYV T+  RR +  +I S   +I++  ER A+N 
Sbjct: 738 FIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLLKRRRYIPDITSRNFNIKSFAERTAMNT 797

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI + + L++  L T +LLQ+HDEL+FE P+EEI    +I+   ME 
Sbjct: 798 PIQGSAADIIKKAMIDMARRLKEENLQTNLLLQVHDELIFEAPKEEIAILEKIVPEVMEN 857

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPLKV+     +W + 
Sbjct: 858 A----LQLDVPLKVDFASGPSWYDA 878


>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
          Length = 953

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/1004 (31%), Positives = 509/1004 (50%), Gaps = 89/1004 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           MQ+   L LVDG +  +RAF+A     +S +  G P  A+ GF ++L  LL+  + E   
Sbjct: 1   MQQRPTLVLVDGHALAFRAFFALRDTGMSVRATGEPTYAVQGFLSILLNLLRERQPE--- 57

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            + AV FD    TFR+++YPDYKA R + P    PQL  ++    A  IP    + +EAD
Sbjct: 58  -YVAVSFDI-GRTFRDDLYPDYKAGRAETPADFHPQLERIKQIINALNIPIYTAENYEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT-----CLYDTVKEEKIDIEHVIKKW- 172
           D+I T    AE +G    II+ D D +QLV+  T       Y        D   V +++ 
Sbjct: 116 DVIGTLCRQAEAQGVDTLIITGDTDTLQLVNDYTKVLLANPYGKGNVSLYDEAQVRERYK 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P ++  L+ L GD+ DNIPG+ GIG   A  +L E+G++ENI  N  ++   + R  
Sbjct: 176 GLAPNQLADLRGLKGDTSDNIPGVKGIGEAGAISMLNEWGSVENIYANLDKV-ANRYRSK 234

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +    E AR S  L  + T+ P+T+ LE   + D +   +++    LEF KL++++  + 
Sbjct: 235 LDGQQEAARFSTHLATIVTNAPVTLDLEATKVHDYDRDTVLALFSQLEFRKLVDKLPLSS 294

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              A  +  +    N                     +Q +   D T              
Sbjct: 295 QVSAVQVVAIPQTTNP--------------------NQLTMFDDATPPS----------- 323

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH---SKPIAI 409
                 ++    +  Y  +  ++ + + V+ L       F + T++++ F    +K + I
Sbjct: 324 ------AEPIAQSGDYQAVTTSEQLAELVRILTAAERLIFDVETNSLNLFSPVPAKVVGI 377

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A+        T       +I L   +     G+     E+++ L+  F +     + HN 
Sbjct: 378 AL--------THTAGCGWYIPLGHRS-----GQQLPIAEVVAALQPLFSDPQKAVVAHNG 424

Query: 470 KYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE------ILK 522
           K+D   L   G+ +     D  + + +L   +S  D+A    +       E      ++ 
Sbjct: 425 KFDMSALSLIGLDVPHLSFDTAIAAALLGKRQSLKDLAFAELRDADDRPIEMTRIETLIG 484

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVS 581
           + K  I +D+++  QV  +A  + ++  +L  L  P+L  +  +  V+E+++ P+  V+ 
Sbjct: 485 TGKKQITMDQVAIEQVTPYASADVDMTARLLALFMPQLGAIPAVREVFEQIEMPLSPVLM 544

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME  GI +D+  L Q    + ++L  +E++I D  GE  N++S   L D+LF +LK P+
Sbjct: 545 RMEACGIGLDRAQLVQQGQVLGQSLREIEQHIADFVGEPLNINSRFDLNDLLFIRLKLPT 604

Query: 642 --------GAKTKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHI 692
                     ++    +   A+ LE +   D + I+  IL +R+LSK+KSTY D+L   I
Sbjct: 605 ANLKRLAGTTRSGGAVYSVNAETLEDLQTHDQSGIVAMILRYRRLSKLKSTYVDALIELI 664

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           N++T RVHT Y      TGRL+S  PNLQNIP++++ G++IRRAF++ P   L++ADYSQ
Sbjct: 665 NQQTGRVHTQYRQIGAETGRLSSDSPNLQNIPVRSEEGREIRRAFVARPGHVLMTADYSQ 724

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELR+LAHI     L +VF+   DIH   AA +F + +++VS   RR AK   F IIYGI
Sbjct: 725 IELRVLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIYGI 784

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA +  + R+EA   I   F ++PG+  YIE+T   V+  GYVET+FGRR ++ E+
Sbjct: 785 SSFGLAARTALSRTEAQQMINGLFAQYPGLKSYIERTLERVKAVGYVETLFGRRRYFREL 844

Query: 873 NSPK--SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                    R+  ER A NA IQG+AAD+ + AMI + ++L       KMLLQ+HDELV 
Sbjct: 845 QDGGVTGPRRSAFEREATNAGIQGTAADLIKLAMIRLEQALIAGGYQAKMLLQVHDELVL 904

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EVPE+E    +Q++  +M +      +L VPL+VN++   NW +
Sbjct: 905 EVPEDERDAVAQLVCDTMTQVYP---DLAVPLEVNVETGLNWDQ 945


>gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 895

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/979 (30%), Positives = 492/979 (50%), Gaps = 109/979 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S +YRAF+A P L+   DG P NA+ GF  M+ +L+ + +     +H AV F
Sbjct: 16  KLVLIDGNSILYRAFFALPPLT-ARDGTPTNAVYGFTTMILRLMSDEK----PTHLAVAF 70

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+  +  YK  R + P+ L+ Q PL R   +A  IP +EI  +EADD+I T  
Sbjct: 71  DKSKTTFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMVEIDQYEADDVIGTLA 130

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKMV 180
             A + GF V ++S DKDL+QLV     +  T K     E  D + V +++ G+ P +++
Sbjct: 131 KRAAEAGFDVRVVSGDKDLLQLVDDRIHVLLTRKGITEMEHFDEQAVARRYPGLKPAQVI 190

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD  DNIPG+PG+G KTA  LL  +G +E +  +   ++ +K            
Sbjct: 191 DLKGLMGDPSDNIPGVPGVGEKTALKLLASFGTVEGVYDHLDEVQGQK------------ 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                          L   L+       +++   T  CDA    
Sbjct: 239 -------------------------------LRERLEQHREDAFLSKRLATIACDA---- 263

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+ +D+ T   +G             +   F SL D+ S+  S  +            + 
Sbjct: 264 PIEVDLETLRYEGP---DPARAIAWFRELDFRSLVDKISEEMSHDS-TPTPSPAAASGAS 319

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              ++ +Y  I +    Q+ +            +     D   ++   +A++T       
Sbjct: 320 SEWSSFAYGLIEDAGAWQEAISSFSEPVGVMMDLA--DPDYHRAEIRGMAVAT------- 370

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++                    LS ++ +  ++   K+  ++K     L  +G
Sbjct: 371 --PKRAYYVRFGERLE-------------LSDVRPWLVSDR-PKVAFDLKSMAFALDAHG 414

Query: 481 ISMR---GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           I +    G++D+ L +Y+L+      +++ +             + R   +P     + +
Sbjct: 415 IGLTSECGWQDVKLAAYLLNPQDGEVELSDV-----------FARERGQELP--AWEEGE 461

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            ++     ++ +  L+  L   + ++++  +Y+ ++ P+  V+++MEITG  ++++ L  
Sbjct: 462 REKWLAYTASQLPPLFESLAYTIRMQEMERLYQEVELPLAFVLAKMEITGFYVNREKLVA 521

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+++ +  + + IYDL+G  FNL+SPKQLG+ILF KL  P+  KTKTG   +T+ D+
Sbjct: 522 FGQELTERIKRITQEIYDLAGTSFNLNSPKQLGEILFDKLGLPALKKTKTGY--STSADV 579

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +     + I++ IL++R L+K++STY + L   I K T RVHT +    T TGRL+S E
Sbjct: 580 LEKLAPMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVHTRFHQTLTATGRLSSSE 639

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+ + G+++R+ F        + +ADYSQIELRILAH++    L   F   +D
Sbjct: 640 PNLQNIPIRLEEGRRLRQVFEPTYKDWVIFAADYSQIELRILAHLSGDEALIDAFRRDMD 699

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA++F V  E+V+  MRR AK +NF I+YGIS F LA  L IP+ EA  +I+ YF
Sbjct: 700 IHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNIPQKEAKRFIESYF 759

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            +FPG+  Y+++     R+ GYV T+  RR +  +I+S    +R+  ER A+N PIQGSA
Sbjct: 760 EKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERTAMNTPIQGSA 819

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ + +++ D ++  +MLLQ+HDEL+FE P++E+     ++  +ME A     
Sbjct: 820 ADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVRDNMENAM---- 875

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L VPLKV+      W + 
Sbjct: 876 TLSVPLKVDTAYGPTWYDA 894


>gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032]
 gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032]
          Length = 879

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/985 (32%), Positives = 501/985 (50%), Gaps = 117/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L LVDG+S  YRAF+A PLLS    G+  NAI GF  +L K+L++ +     +H
Sbjct: 1   MTDKKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAIYGFAMILMKMLEDEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q+P +R    A+ +   E+  +EADDI
Sbjct: 56  MLVAFDAGKTTFRHETFKEYKGGRQKTPPELSEQMPFIRELLDAYQVKRYELPQYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V I S DKDL QL +  T +  T K     E     H+ +K+G+ P
Sbjct: 116 IGTLAVEAEKDGFEVKIFSGDKDLTQLSTDHTTVAITKKGITEVEYYTPAHIEEKYGLRP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++ L GDS DNIPG+PG+G KTA  LL+++  +EN                +LE+
Sbjct: 176 DQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFETVEN----------------LLEH 219

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +                           + +G +L   L+  +   ++++   T   +A
Sbjct: 220 ID---------------------------EVSGKKLKEKLEEFKEQAVMSKELATILVEA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ +       +G  ++  I        S +  L  QT      + P+      + 
Sbjct: 253 ----PIDVSSKDLAYEGPHMDQVI--------SLYKELGFQTLLERLGEAPETDEQVEVD 300

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L    +   +   + +                A+  +     +   +  I  AI     
Sbjct: 301 ALEVKKMTAVTSEMLTDH---------------AALVVEQLGDNYHEADLIGFAI----- 340

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                            H    +              K++ ++E   K   + K   + L
Sbjct: 341 -----------------HNENGAFFMTKEDALQSEAFKEWVQDETKKKWVFDSKRAVVAL 383

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE---ILKSRKSSIPID 531
             + + ++G + D++L SYV++  ++  D+AS+A+++ L+    +     K  K +IP  
Sbjct: 384 RWHDVDLKGVDNDVLLASYVVNPQKTYEDVASVAKEYGLNIALSDEKVYGKGAKQAIP-- 441

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              + +++EH    +  I  L  L    L       +YE L+ P+  ++ +ME  G+++D
Sbjct: 442 --PEDELKEHLGRKAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGVKVD 499

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+ +  E++K L   EE I+ L+GE FN++SPKQLG ILF KL  P   KTKTG   
Sbjct: 500 IKRLENMGEELTKKLKEYEETIHRLAGETFNINSPKQLGVILFEKLGLPIIKKTKTGY-- 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + II++IL +RQ+ K++STY + L     K T +VHT ++ A T TG
Sbjct: 558 STSADVLEKLEDKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTG 617

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI++   L + 
Sbjct: 618 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWLMFAADYSQIELRVLAHISQDENLIEA 677

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   +DIH   A ++F V+ E+V+  MRR AK +NF I+YGIS + L+  L I R EAA 
Sbjct: 678 FTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAA 737

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RY   F G+  Y+E+     +Q GYV T+  RR +  +I S   +I++  ER A+N 
Sbjct: 738 FIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLLKRRRYIPDITSRNFNIKSFAERTAMNT 797

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI + + L++ KL T +LLQ+HDEL+FE P+EEI    +I+   ME 
Sbjct: 798 PIQGSAADIIKKAMIDMARRLKEEKLQTNLLLQVHDELIFEAPKEEIAILEKIVPEVMEN 857

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPLKV+     +W + 
Sbjct: 858 A----LQLDVPLKVDFASGPSWYDA 878


>gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10]
          Length = 986

 Score =  774 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1003 (29%), Positives = 488/1003 (48%), Gaps = 55/1003 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG S + RAFY  P L+    GL  NA+ GF N++++++++ +    A   AV F
Sbjct: 3   KVVLIDGHSILNRAFYGVPELTNSR-GLHTNAVYGFLNIMFRVIEDEK----ADCLAVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++Y  YK  R  +PE L  Q+P+++    A GIP + + G+EADD++ T  
Sbjct: 58  DLKEPTFRHKMYEAYKGTRKPMPEELREQVPVIKEVLSAMGIPILSVPGYEADDVLGTIA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKM 179
                EG  V+I+S D+DL+QL      +                   V +++ + P++ 
Sbjct: 118 GRCAAEGAEVSIVSGDRDLLQLADEHVKIRMPRTNRGGTEIKDFYPADVKEQYQVTPKEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+P IG KTA  L+  YG++EN   +   IK  + ++ + E+ + 
Sbjct: 178 IDVKALMGDASDNIPGVPSIGEKTATALITTYGSIENAYAHLDEIKPPRAQKALREHYDM 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A++S++L  + TD P+   +E   + +   P+    +  LEF  L+ R       +    
Sbjct: 238 AQMSKELATICTDCPVEFSMEEAKIGELYTPQAYELMSQLEFKSLLLRFDANARTENQVE 297

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIK------TSQFSSLSDQTSKINSEQTPQKLFLE 353
           +           + +  +    +D   +      + Q   L+   + I   +T   +  E
Sbjct: 298 KQFRAVTGREAAEAVFAKARKAKDAGAQLIVEGQSVQALGLAFGETDIYCLETGGDVTGE 357

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L       I +      ++ K    ++   +T          D       +        
Sbjct: 358 YLAGQLNELIASGVRMSFLDLKSQLGFLPAAQTECDRP-----DGKSPEGKEGEGCGQLL 412

Query: 414 LDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
            D           K    + DL+    + +           S+ +   E       G   
Sbjct: 413 FDTGVAGYLINPLKDTYDYDDLARDFLELTVPSRADLMGKKSFAQALLERPEKEGDG--- 469

Query: 470 KYDKLVLHRYGISMRGFED--IMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
                   + G+   GF D      +   D   SS       Q  L       +E LK  
Sbjct: 470 -ETTAEAEKKGLRTAGFADFEQTEGATPFDETESSTGDEESGQMSLFSFMDSSEESLKEG 528

Query: 525 KSSIPIDKISDSQ-------------VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           K     + + + Q              ++     +    +    L  KL    +  ++  
Sbjct: 529 KEQEKTEPVREEQTAGKVSIRTALNPAEQCICHMAYTAWKSRERLTKKLEELDMKELFYT 588

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+I  +  ME  GI + ++ L     ++   +  LE+ IY  +GE FN++SPKQLG+
Sbjct: 589 IEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYGETGEHFNINSPKQLGE 648

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K++ P G KTKTG   +TA D+ +    + P+++ IL++RQL+K+KSTYAD L  +
Sbjct: 649 ILFGKMELPYGKKTKTGY--STAADVLEKLAPEYPVVQKILDYRQLTKLKSTYADGLAGY 706

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           I +   R+H  ++   T TGRL+S EPNLQNIP++ +LG++IRR F+       + ADYS
Sbjct: 707 IREDG-RIHGTFNQTITATGRLSSTEPNLQNIPVRMELGREIRRVFVPEEGSVFVDADYS 765

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAH++    L + +  + DIH + A+E+F V +E+V+P  RR+AK +NF I+YG
Sbjct: 766 QIELRVLAHMSGDERLIEAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVYG 825

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           IS F L+  L I R EA +YI RYF  +P + +++++     ++ GYV T+F RR    E
Sbjct: 826 ISAFGLSEDLSITRKEALEYINRYFETYPDVKKFLDRLVEEGKEKGYVTTMFKRRRPVPE 885

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           ++S     R+  ER A+N+PIQG+AADI + AM  V   L    L +K++LQ+HDEL+ E
Sbjct: 886 LSSKNFMQRSFGERVAMNSPIQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIE 945

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +EE+     I+   M+ A     +LRV L++++K  N+W E
Sbjct: 946 AKKEELKRVQTILSEEMKHAA----DLRVALEIDMKTGNSWFE 984


>gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905]
 gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905]
          Length = 875

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/985 (31%), Positives = 497/985 (50%), Gaps = 121/985 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML ++L+  +     + 
Sbjct: 1   MTKE-KLLLLDGNSLAYRAFFALPLLTNDS-GIHTNAVYGFTTMLQRILEEEQ----PTQ 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q P +R    A+GI   E   +EADDI
Sbjct: 55  ILVAFDAGKTTFRHETFTEYKGGRQKTPPELSEQFPYIRKLIDAYGIKQYEQDLYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A  +   V I+S D+DL QL +    +Y T K     E+     + +K+G+ P
Sbjct: 115 IGTLAKEASSQDMDVIIVSGDRDLTQLATEQVTVYITKKGITEIERNTPAFIAEKYGLTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  LL+E+G++E +                 E 
Sbjct: 175 LQIIDMKGLMGDSSDNIPGVPGVGEKTAVKLLKEHGSVEALY----------------EA 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +T + S+                          +L++  +     K+  ++AT +    
Sbjct: 219 MDTLKASKM-----------------------KEKLVANEEQ---AKMSKKLATIF---- 248

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + +      G   E  I+     +   F SL +++     EQ       E++Q
Sbjct: 249 -TDAPITISLTDLAYHGPNEEELINVW---RELGFKSLLEKSDFTVQEQEQAPFDFEQIQ 304

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           ++ Q  + +                         +  +  +         + IA+S  ++
Sbjct: 305 EVRQEDLQD-----------------------VMAVHVELENEHYHTCALLGIALSDGNK 341

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                F +                            L+ + E+   +K   + K  +  L
Sbjct: 342 TQYIPFDIAAK----------------------SDILRCWLEDSSKIKYMSDSKASQAAL 379

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKE--ILKSRKSSIPID 531
            R GI + G + D++L SY+ + G S  D+A++A++  +      E    K  K +IP  
Sbjct: 380 KRAGIQLAGVDFDLVLASYINNPGLSGDDVATLARELGYYDVQADETVYGKGAKRAIP-- 437

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
                ++ +H    +  +  L   L   L   +   +Y+ L+ P+  ++ +ME  GI ++
Sbjct: 438 --EIDKLAQHVSRKAYAVWSLQPKLEALLKENEQFDLYKDLELPLAAILGEMESEGITVN 495

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +  L+++  E+++ L+ LE+ IY  +GE FN++SPKQLG ILF KL  P   KTKTG   
Sbjct: 496 RATLEKMGQELNEKLVVLEQEIYAEAGETFNINSPKQLGVILFDKLGLPVIKKTKTGY-- 553

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +TA D+ +    ++ II+ IL +RQL K++STY + L   I+++  +VHT +  A T TG
Sbjct: 554 STAADVLEKLKSEHAIIEYILLYRQLGKLQSTYIEGLLKEIHEKDSKVHTRFQQALTATG 613

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       L SADYSQIELR+LAH+++   L + 
Sbjct: 614 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSNENWILFSADYSQIELRVLAHMSEDKNLVEA 673

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   +D+H   A ++F V+ ++V   MRR AK +NF I+YGIS + L+  L I R EAA 
Sbjct: 674 FREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVYGISDYGLSQNLDITRKEAAT 733

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I +YF  FPG+ +Y++      + NGYV TI  RR +  +I S   ++R+  ER A+N 
Sbjct: 734 FIDKYFASFPGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITSSNFNLRSFAERTAMNT 793

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L+   +  K+LLQ+HDEL+FE P+EEI    +I+   ME 
Sbjct: 794 PIQGSAADIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMEN 853

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    I L VPLKV+    + W E 
Sbjct: 854 A----IELSVPLKVDFNHGSTWYEA 874


>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
          Length = 878

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/999 (31%), Positives = 499/999 (49%), Gaps = 146/999 (14%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L         +H
Sbjct: 1   MRLKKKLVLIDGSSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEE----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPEAVREKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++       DA
Sbjct: 226 ---------------------------------EKLKETLRQHREMALLSKKLAAIRRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  +      K   F S  ++    +SE+       + L 
Sbjct: 253 ----PVELSLDDIVYQGEDREKVV---ALFKELGFQSFLEKMESPSSEEE------KPLA 299

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           K++    +  +   + +                A+  +     +   +  + IA+   + 
Sbjct: 300 KMAFTLADRVTEEMLAD---------------KAALVVEVVEENYHDAPIVGIAV-VNEH 343

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     +                            +  +E   K   + K   + L
Sbjct: 344 GRFFLRPETALADP---------------------QFVAWLGDETKKKSMFDSKRAAVAL 382

Query: 477 HRYGISM-----------------RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              GI +                 +G +D+   + +              +++ +    E
Sbjct: 383 KWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM--------------KQYEAVRPDE 428

Query: 520 --ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
               K  K ++P + +    + EH +  +  I  L      +L   +   +   L++P+ 
Sbjct: 429 AVYGKGAKRAVPDEPV----LAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLS 484

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL
Sbjct: 485 SILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLGVILFEKL 544

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           + P   KTKTG   +T+ D+ +     + I++NIL +RQL K++STY + L   +   T+
Sbjct: 545 QLPVLKKTKTGY--STSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTK 602

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELR 756
           +VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR
Sbjct: 603 KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 662

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+YGIS + 
Sbjct: 663 VLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYG 722

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S  
Sbjct: 723 LAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRN 782

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+ E P+EE
Sbjct: 783 FNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE 842

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +    +++   ME+A    + LRVPLKV+    + W + 
Sbjct: 843 MERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTWYDA 877


>gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605]
 gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605]
          Length = 986

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1025 (29%), Positives = 480/1025 (46%), Gaps = 95/1025 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
             +  L LVDG S  +R+FYA            DG P +   GF   L     ++ K   
Sbjct: 5   TAKPLLLLVDGHSLAFRSFYAFSKGGEGGLATKDGRPTSVTYGFLKALL----DNSKTLQ 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ-AFGIPAIEIQGFE 116
               A+ FD    TFR++   +YKA+R   PE+    L  ++   +    +P     GFE
Sbjct: 61  PEGVAIAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLEQLQQILETHLQLPLCMAPGFE 120

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIE 166
           ADD++ T    A   G+ V I+S D+DL QLV  +               +     I  E
Sbjct: 121 ADDVLGTLANRAADSGWGVRILSGDRDLFQLVDDSRDIAVLYMGGGPYAKSSGPTLIREE 180

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V+ K G+ P+K+V L+ALTGDS DNIPG+ G+G KTA  LL++  +L+ +      ++ 
Sbjct: 181 GVLGKLGVIPDKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNSDLDAVYATLEEVEA 240

Query: 227 -----------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
                         +E +    + A LSRKL  +  DVP+      L L   +   L S 
Sbjct: 241 EGPKASRGAIKGALKEKLRADRDNAYLSRKLAEILVDVPLPKEP-SLPLSSVDADGLSSC 299

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           L+ LE   L+ +V                +     N   A      R  T + +   + +
Sbjct: 300 LEDLELNSLLRQVG--------GFVAAFSEGGYGANAEAAAAKPPHRSATTEPAAAETAT 351

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----AS 391
           +  +  +                    +       I     +   VQ+L          +
Sbjct: 352 EPVTNDD------------------VGVPALKPKLIQTETALDALVQRLMACTDSSLPVA 393

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  ++ F ++ + I I   +  D  +      +I L    S+DS  +    + +L+
Sbjct: 394 FDTETTDLNPFRAELVGIGICWGEDLDALA------YIPLGHKGSEDSIPEQLSLETVLT 447

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
            L  +  + +  K   N KYD+L+L R+GI++ G   D +L  Y+ D+    H +  +A+
Sbjct: 448 ALAPWLASSNHPKTLQNAKYDRLILLRHGIALEGVVIDTLLADYLRDASA-KHGLELMAE 506

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHV 568
           +   +                 +       +   + +V  +L LLLR +L     +LL +
Sbjct: 507 REFGFQPTSFTDLVGKKQTFADVPLEPASLYCGMDVHVTRRLALLLRHQLETMGPQLLPL 566

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
            E++++P+  V+++ME TGI+ID   L+ +S E+   L  LE +    +G  FNL+SPKQ
Sbjct: 567 LEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTLQQLESDAKAAAGVDFNLASPKQ 626

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG++LF  L        +T    +T   + +    D+P++  +L+ R LSK+KSTY D+L
Sbjct: 627 LGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLGNDHPVVPLVLDHRVLSKLKSTYIDAL 686

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+      L+SA
Sbjct: 687 PQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWTLLSA 746

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRIL H++    L + +    D+H + A  +  ++ ++VSP  RR  KTINF +
Sbjct: 747 DYSQIELRILTHLSGEKVLQEAYRGGDDVHALTARLL--LDKDEVSPDERRLGKTINFGV 804

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+   R A +  + +SEA +++ +Y  R+P +  ++E  +      GYVETI GRR  
Sbjct: 805 IYGMGAQRFARETGVSQSEAKEFLVKYKQRYPKVFAFLELQERLALSRGYVETILGRRRP 864

Query: 869 YDEIN------------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           +                      + +  +     RAA NAPIQGS+ADI + AM+ +  +
Sbjct: 865 FHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQDA 924

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L    L  ++LLQ+HDELV EV  + + T   ++V +ME+A      L VPL V   V  
Sbjct: 925 LLRQGLPAQLLLQVHDELVLEVAPDALETTRDLVVRTMEQA----FELSVPLVVETGVGA 980

Query: 971 NWQEE 975
           NW E 
Sbjct: 981 NWMEA 985


>gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
 gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
          Length = 888

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/979 (33%), Positives = 515/979 (52%), Gaps = 109/979 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K N + ++DG+S I+RAF+A PLLS   DGLP NA+ GF NML K+L + + +      
Sbjct: 9   AKNNTILVIDGNSLIHRAFHAIPLLSTA-DGLPTNAVYGFTNMLLKILNDIQPKW----V 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFRN+ Y +YKA+R   PE L PQ  LV+    A  I  +E +G+EADD+I
Sbjct: 64  TVAFDKSKTTFRNQEYSEYKAHRKATPEELRPQFSLVKDVLNALSIKWLEAEGYEADDLI 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T    AE+E   V I+S DKD++QLVS  T    T K     E+ + E+V +K+G+ P 
Sbjct: 124 GTIVKKAEEEDADVVILSGDKDILQLVSDKTRAILTKKGITEIEEYNAENVYRKFGVHPN 183

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++   + LTGD  DNIPG+PGIG KTA  LLQ++ ++EN                IL   
Sbjct: 184 QITDYKGLTGDPSDNIPGVPGIGPKTATKLLQDFDSVEN----------------ILANL 227

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +                                R  + ++      L+++   T   +  
Sbjct: 228 DKI----------------------------TSRARTLMENNSEQALLSKRLATIITNV- 258

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              PV + +     +    E E+         +       T++  +    ++  L   Q 
Sbjct: 259 ---PVQITLEQ-CIRTEPNEAELFNILKKLEFKKLLRDMLTAETGNSNQIKQKHLINKQS 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +        Y  +   +D +  + + +  G  +  +            I++A+   + +
Sbjct: 315 YA------VEYITLSEQEDFEDLLVQAQKSGKVALALQGR----REKGLISVALCLSEGQ 364

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +          + L+  T   S          L  L+    +    K  ++ K D  +LH
Sbjct: 365 NYL--------LPLNSSTETTSFA--------LKLLQNICVDSKIKKCCYDTKADLWLLH 408

Query: 478 RYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            YGI + +   D+ML  Y+L+ G+S+  +   A   L    +E  ++             
Sbjct: 409 YYGIEINQPGFDVMLADYLLNPGKSARSLPETALSHLDIVLQEGSET------------- 455

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +   ++ VI +L  +L+ KL++++  ++Y  ++ P++ V++ ME TG+ +D++ L+
Sbjct: 456 ----YLPASAEVISRLVDILQSKLLLQEQENLYYDIELPLLKVLASMERTGVSVDKEQLQ 511

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S E++K L  L  +IY+ +GE FN++S KQLG ILF KLK  +G KTKTG + T    
Sbjct: 512 LMSEELNKKLQVLTTDIYEHAGEIFNINSTKQLGSILFEKLKLKAGKKTKTG-YSTDVTV 570

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++  GD+P++  +LE+RQL+K+KSTY D L   IN +T ++HT +  A T TGRL+S 
Sbjct: 571 LEEL-AGDHPVVSLLLEYRQLAKLKSTYVDGLTGLINPQTGKLHTTFHQAVTATGRLSSS 629

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQN+PI+ D G+KIR+ F+   P   + SADYSQIELRILAHIA+   L   F    
Sbjct: 630 EPNLQNVPIRLDAGRKIRKFFVPCKPDNFIFSADYSQIELRILAHIAQDNNLMDAFAKKQ 689

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+FGV +++V+P+MR  AK +NF I+YGIS F LA  +++ R EA  YI  Y
Sbjct: 690 DIHTRTASEVFGVAMDEVTPEMRGRAKAVNFGIVYGISDFGLAKDIKVTRKEAGRYINNY 749

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F+R+ G+  YI++     R+ GYV TI  RR +  ++ S    +R+  ER A+N PIQGS
Sbjct: 750 FNRYSGVKAYIDRVIREAREKGYVTTILNRRRYLPDLFSSNRVVRSFGERTAMNTPIQGS 809

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           A+DI + AM+ +++ +   KL++ M+LQ+HDEL+F+V   E+     ++ + ME A    
Sbjct: 810 ASDIIKLAMVLIYREMRKRKLSSTMILQVHDELIFDVVASEVEEMQNLVKYYMENA---- 865

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L VPL V++K+  NW +
Sbjct: 866 VELSVPLVVDMKIGPNWYD 884


>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
          Length = 878

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/999 (31%), Positives = 499/999 (49%), Gaps = 146/999 (14%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L         +H
Sbjct: 1   MRLKKKLVLIDGSSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEE----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPEAVREKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++       DA
Sbjct: 226 ---------------------------------EKLKETLRQHREMALLSKKLAAIRRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  +      K   F S  ++    +SE+       + L 
Sbjct: 253 ----PVELSLDDIVYQGEDREKVV---ALFKELGFQSFLEKMESPSSEEE------KPLA 299

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           K++    +  +   + +                A+  +     +   +  + IA+   + 
Sbjct: 300 KMAFTLADRVTEEMLAD---------------KAALVVEVVEENYHDAPIVGIAV-VNEH 343

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     +                            +  +E   K   + K   + L
Sbjct: 344 GRFFLRPETALADP---------------------QFVAWLGDETKKKSMFDSKRAAVAL 382

Query: 477 HRYGISM-----------------RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              GI +                 +G +D+   + +              +++ +    E
Sbjct: 383 KWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM--------------KQYEAVRSDE 428

Query: 520 --ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
               K  K ++P + +    + EH +  +  I  L      +L   +   +   L++P+ 
Sbjct: 429 AVYGKGAKRAVPDEPV----LAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLS 484

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL
Sbjct: 485 SILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLGVILFEKL 544

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           + P   KTKTG   +T+ D+ +     + I++NIL +RQL K++STY + L   +   T+
Sbjct: 545 QLPVLKKTKTGY--STSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTK 602

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELR 756
           +VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR
Sbjct: 603 KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 662

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+YGIS + 
Sbjct: 663 VLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYG 722

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S  
Sbjct: 723 LAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRN 782

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+ E P+EE
Sbjct: 783 FNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE 842

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +    +++   ME+A    + LRVPLKV+    + W + 
Sbjct: 843 MERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTWYDA 877


>gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 936

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/987 (33%), Positives = 512/987 (51%), Gaps = 70/987 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            N + LVDGS +I+RA++A P L    DG PV  I G  NM+  LL   +     +H  V
Sbjct: 6   NNPIILVDGSCYIHRAYHAFPELIT-SDGKPVWVIYGVINMIKSLLIRYQ----PTHMVV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFRN ++  YKANR K P+ L  Q+  +    QA G+  +++   EADD+I T
Sbjct: 61  VFDAMGKTFRNNLFEKYKANRMKTPKHLYTQIDPLCEIIQAMGLSILKVPDVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G +V I + DKD+ Q+VS    L +T+       + V K++G+PP  +    
Sbjct: 121 LAISCARSGNSVLISTGDKDMAQIVSSQITLINTMSNIIFTPKEVEKQFGVPPTLIADYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--------KQKKRRENILE 235
           AL GD  DNIPG+PGIG KTA +LL + GNL+ +  +  +I          +  +  +  
Sbjct: 181 ALIGDRSDNIPGVPGIGKKTAQILLNKIGNLKLLYDHLDKISLLNLGLRGARAIQNTLQA 240

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A LS KL  ++TDV + I    L+++  N   L       EF   +  + +    +
Sbjct: 241 NKEVAFLSYKLTTIKTDVSLNISDYQLLIQQLNINTLQLLFTEYEFKNWLIDLQSGTWLN 300

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                             ++  L    S      T   L  ++ 
Sbjct: 301 ----------------------------------KYHHLKHVPSHRRLNNT---LLFQKN 323

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             LS Y         I NT+ +  W++K++      F I TD  +   +  I+I +S  D
Sbjct: 324 NLLSDYSKEKKIIKIICNTEMLFNWIEKIDESKFFIFSIHTDVFNVATANIISICLSI-D 382

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K+     ++T         S ++       +EILS L+   ENE   K+G ++K+   +
Sbjct: 383 TKESAYIPIKT--------DSINNHQNFLYLEEILSILQPTLENEKIKKVGQHLKFSYSI 434

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L RY I++ G   D++L  Y+L    + HDI +   K          K+  +    + +S
Sbjct: 435 LKRYNINLAGMAFDVILELYILYGTANYHDIKNFLDKDTFNVVTNFKKNYDNYNENNILS 494

Query: 535 DSQVQE----HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           D Q  +    +A +    +  L   L PK+    KL  ++E ++ P+I ++S++E  G+ 
Sbjct: 495 DLQNIQLQSLYAAKFIKSLFNLHHTLWPKIEANNKLKKIFEEVEMPLISILSRIENYGVL 554

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID+ LL   + E+   L +LE   Y L G  FNL+S KQL +IL+ + K P   KT  G 
Sbjct: 555 IDKKLLNTHAVELDYRLHALELEAYQLVGTPFNLASTKQLQEILYNQQKLPILKKTPKGA 614

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L++++     + + IL++R LSK++STY + L   INK++ RVHT Y+   T 
Sbjct: 615 PSTNEEVLKKLS-KKYSMPRIILQYRALSKLQSTYINKLIAMINKKSNRVHTSYNQTRTS 673

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIP +   G+KIR+AFI+P    +++ADYSQIELRI+AH+++   L  
Sbjct: 674 TGRLSSTSPNLQNIPNRNYDGRKIRQAFIAPKNFLIVAADYSQIELRIMAHLSQDIELIN 733

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  DIH   A+EIF   +  V+ + R+ AKTINF +IYG+S F LA QL +   EA 
Sbjct: 734 DFLSEKDIHTATASEIFVTALHLVTDEQRQRAKTINFGLIYGMSAFGLARQLSVTCKEAQ 793

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+ RYF+R+PG+ +Y++  +    + GYV T+ GRR++  +I S     +   ERAAIN
Sbjct: 794 KYVDRYFNRYPGVMKYMQHIREHANKYGYVSTLDGRRLYLPDIYSANILQKKGAERAAIN 853

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QGSAADI ++AMIS+   L+  ++  ++++Q+HDELVFEV  + +    + I   ME
Sbjct: 854 APMQGSAADIIKKAMISIDNWLQKDEIPARIIMQVHDELVFEVHNDIVDPVVKKIKKLME 913

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           +  +    + VPLKV++ +  NW++ +
Sbjct: 914 ECFI----MDVPLKVDVGIGKNWEQAH 936


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/985 (31%), Positives = 494/985 (50%), Gaps = 78/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    ++D    +YR  +     PLL+ K  G  V++I GF    + L+        A +
Sbjct: 2   KKTFLIIDAFGILYRYHFIFLKRPLLNSK--GQNVSSINGFMRTYFSLINT----YPAEY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+  D    TFRNEIY +YK NR  +P+ L  Q+P++     A GI  I +  +EADDI
Sbjct: 56  VAIALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPPE 177
           + T     +KE     I S DKD++QLV     +  + K+ +    D + V +K G+ P 
Sbjct: 116 VGTIAERNKKENIKTIIYSPDKDILQLVDDDVKVVASNKDNELMEYDAQAVKEKRGVYPN 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L +L GD+ DNIPG+ G+G KTA  LL+EY +L+ I  N   IK  K +E +LE  
Sbjct: 176 QIIDLLSLMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKG-KIQEKLLESK 234

Query: 238 ETARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           + A +S KL  +  ++    +    +     N   +   L  LE  ++ +++ +      
Sbjct: 235 DMAYMSYKLATIERNIEGFNLDYNEIASSKINIDEVNKILDELELKQIRDKINSY----- 289

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                 +   +  E+K      +I++D   KT +   LS +                   
Sbjct: 290 ------IYGSSKKEDKVKISNDKINKDNDSKTEEAPILSAKD------------------ 325

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                  N  SY  I N  +++  ++ + +         T  +D F    I I+ +    
Sbjct: 326 -------NKSSYYLIENETELENLLKDINSKKLVCIDFETTGLDTFKDTIIGISFAIKSN 378

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++DLS  T  D      L  +         E E    IGHN+KY+  ++
Sbjct: 379 E--------AFYLDLSGRTKIDKDKCMNLVFDT-------LEKEDIKVIGHNLKYEYKMM 423

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
              G S+   + D M+ +Y+++  R  +++  +A  +LSY      ++  + K    +  
Sbjct: 424 RAIGKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYADLTDNAKK--TLLD 481

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                V E+A E+++V  + +    P L    L  ++  ++ P++ V++ ME  G+ I  
Sbjct: 482 APLKDVVEYACEDADVTFRFYECFAPLLKTHNLEDLFFNIEMPLVSVLADMEFDGVYISS 541

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + +K +S E S  L   +E IY  +GE+FNL SPKQL  ILF K+  P   KTKTG   +
Sbjct: 542 ERMKALSDEYSSLLEKTKEKIYKEAGEEFNLQSPKQLEYILFDKMGIPPTKKTKTG--FS 599

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +++         I + +L +R+ +K+K+TY D  P  IN++T R+H  ++   T TGR
Sbjct: 600 TDEEVLTELSQKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGR 659

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIP++ + G++IR  FI      LI+ADYSQIELR+LAH +    L + F+
Sbjct: 660 LSSSEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFK 719

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N+ DIHR  A +I+ V+ E V+  MR  AK INFSIIYG + F L+ +L I R EA D+I
Sbjct: 720 NNDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFI 779

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-DEINSPKSSIRNINERAAINAP 891
           K YF  +  +  + E+    VR  G+V T+ GR       INS  +  RN  ER A+N  
Sbjct: 780 KGYFSTYSRVKPFCEEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTL 839

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AM+++HK  ++H    K+++Q+HDELV EV E E   A  I+   ME  
Sbjct: 840 IQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIMEH- 898

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               +   VP+ V+I   N+W E +
Sbjct: 899 ---SVKANVPIIVDIHKGNSWGEVH 920


>gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1]
 gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1]
          Length = 986

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/1003 (29%), Positives = 488/1003 (48%), Gaps = 55/1003 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG S + RAFY  P L+    GL  NA+ GF N++++++++ +    A   AV F
Sbjct: 3   KVVLIDGHSILNRAFYGVPELTNSR-GLHTNAVYGFLNIMFRVIEDEK----ADCLAVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+++Y  YK  R  +PE L  Q+P+++    A GIP + + G+EADD++ T  
Sbjct: 58  DLKEPTFRHKMYEAYKGTRKPMPEELREQVPVIKEVLSAMGIPILSVPGYEADDVLGTIA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKM 179
                EG  V+I+S D+DL+QL      +                   V +++ + P++ 
Sbjct: 118 GRCAAEGAEVSIVSGDRDLLQLADEHVKIRMPRTNRGGTEIKDFYPADVKEQYQVTPKEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+P IG KTA  L+  YG++EN   +   IK  + ++ + E+ + 
Sbjct: 178 IDVKALMGDASDNIPGVPSIGEKTATALITTYGSIENAYAHLDEIKPPRAQKALREHYDM 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A++S++L  + TD P+   +E   + +   P+    +  LEF  L+ R       +    
Sbjct: 238 AQMSKELATICTDCPVEFSMEEAKIGELYTPQAYELMSQLEFKSLLLRFDANARTENQVE 297

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIK------TSQFSSLSDQTSKINSEQTPQKLFLE 353
           +           + +  +    +D   +      + Q   L+   + I   +T   +  E
Sbjct: 298 KQFRAVTGREAAEAVFAKARKAKDAGAQLIVEGQSVQALGLAFGETDIYCLETGGDVTGE 357

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--- 410
            L       I +      ++ K    ++   +T          D       +        
Sbjct: 358 YLAGQLNELIASGVRMSFLDLKSQLGFLPAAQTECDRP-----DGKSPEGKEEEGCGQLL 412

Query: 411 -ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
             + +        K    + DL+    + +           S+ +   E       G   
Sbjct: 413 FDAGVAGYLINPLKDTYDYDDLARDFLELTVPSRADLMGKKSFAQALLERPEEEGDG--- 469

Query: 470 KYDKLVLHRYGISMRGFED--IMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524
                   + G+   GF D      +   D   SS       Q  L       +E L   
Sbjct: 470 -ETTAEAEKKGLRAAGFADFEQTEGATPFDETESSPGDEESGQMSLFSFMDSSEESLTEG 528

Query: 525 KSSIPIDKISDSQ-------------VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           K     + + + Q              ++     +    +    L  KL    +  ++  
Sbjct: 529 KKQEKTEPVREEQTAGKVSIRTALNPAEQCICHMAYTAWKSRERLMKKLEELDMKELFYT 588

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+I  +  ME  GI + ++ L     ++   +  LE+ IY  +GE FN++SPKQLG+
Sbjct: 589 IEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYGETGEHFNINSPKQLGE 648

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF K++ P G KTKTG   +TA D+ +    + P+++ IL++RQL+K+KSTYAD L  +
Sbjct: 649 ILFGKMELPYGKKTKTGY--STAADVLEKLAPEYPVVQKILDYRQLTKLKSTYADGLAGY 706

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           I +   R+H  ++   T TGRL+S EPNLQNIP++ +LG++IRR F+       + ADYS
Sbjct: 707 IREDG-RIHGTFNQTITATGRLSSTEPNLQNIPVRMELGREIRRVFVPEEGSVFVDADYS 765

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELR+LAH++    L + +  + DIH + A+E+F V +E+V+P  RR+AK +NF I+YG
Sbjct: 766 QIELRVLAHMSGDERLIEAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVYG 825

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           IS F L+  L I R EA +YI RYF  +P + +++++     ++ GYV T+F RR    E
Sbjct: 826 ISAFGLSEDLSITRKEALEYINRYFETYPDVKKFLDRLVEEGKEKGYVTTMFKRRRPVPE 885

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           ++S     R+  ER A+N+PIQG+AADI + AM  V   L    L +K++LQ+HDEL+ E
Sbjct: 886 LSSKNFMQRSFGERVAMNSPIQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIE 945

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +EE+     I+   M+ A     +LRV L++++K  N+W E
Sbjct: 946 AKKEELKRVQTILSEEMKHAA----DLRVALEIDMKTGNSWFE 984


>gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4]
          Length = 930

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/995 (29%), Positives = 497/995 (49%), Gaps = 86/995 (8%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M++     L L+DG S + RAF+  P L+   +GL  NA+ GF N+++K+L+  + +   
Sbjct: 1   MERTMGEKLVLIDGHSILNRAFFGIPDLTN-SEGLHTNAVYGFLNIMFKILEEEQPD--- 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +  V FD    TFR++++ +YK  R  + + L  Q+PL++   +A G+  IE  G+EAD
Sbjct: 57  -YLTVAFDVSEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKW 172
           D++ T    +E++G  V+++S D+DL+QL +    +     +      E  +   V +K+
Sbjct: 116 DLLGTIAKQSEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGTEIEDYNAAEVKEKY 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            + P + + ++AL GD+ DNIPG+PGIG KTA  ++ +YG++EN   +   +K  +  +N
Sbjct: 176 QVTPIEFIDVKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKN 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC---NGPRLISFLKALEFTKLINRVA 289
           + EY + A++S+ L  +     I   L    L               K LEF  L+NR A
Sbjct: 236 LKEYYDLAQMSKTLATIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNRFA 295

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
                + A                                     ++    +   +  +K
Sbjct: 296 VETPKNQA-------------------------------------AEHFKLVEDRKEAEK 318

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
           +F +   +   + I   S  K  + ++    +                      S+P  I
Sbjct: 319 VFAKLRGRNCGFYIVPGSKKK-DSHEEEDGQMNLFAAGDMPGAD----------SEPSGI 367

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
             S   + D   + +          T     G+N   K+ILS       +E       ++
Sbjct: 368 VES--AENDAVEYCLGAAISTGEEETFFIKAGENLPAKQILSMFT---ASEAASYATLDL 422

Query: 470 KYDKLVLH------RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEI 520
           K     L          I +    D +L +Y+L+  ++ +    IA+ ++      + ++
Sbjct: 423 KPQLAALGLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADL 482

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           L        +   +      +    + V       L   L  E + H++  ++ P++  +
Sbjct: 483 LGKLTIEQAMKD-APEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFTL 541

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           + ME  GI   ++ L +   +++  +  LE+ IY+ +GE+FN++SPKQLG ILF KL  P
Sbjct: 542 ADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEFNINSPKQLGVILFEKLSMP 601

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
            G KTKTG   +TA D+      + PI+ +ILE+RQL+K+KSTYAD L N+I K   R+H
Sbjct: 602 YGKKTKTGY--STAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDG-RIH 658

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T ++   T TGRL+S EPNLQNIP++ +LG+ IR+AF+     + + ADYSQIELR+LAH
Sbjct: 659 TSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAH 718

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L + +  + DIHR+ A+++F +  ++V+   RR+AK +NF I+YGIS F L+  
Sbjct: 719 MSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQD 778

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I + EAA+YI+RYF  +P I  +++      ++ GYV T+FGRR    E++S     R
Sbjct: 779 LSISKKEAAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQR 838

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ER A+N+PIQG+AADI + AMI VH  L    L ++++L +HDEL+ E   EE    
Sbjct: 839 SFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAV 898

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +I+   M  A     +L V L+++  V  NW E 
Sbjct: 899 RKILEEEMHGAA----DLAVTLEIDAHVGKNWYEA 929


>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
          Length = 876

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/996 (31%), Positives = 497/996 (49%), Gaps = 146/996 (14%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L         +H  V
Sbjct: 2   KNKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEE----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDII T
Sbjct: 57  AFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ PE++
Sbjct: 117 LAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVREKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK              
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKG------------- 223

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++       DA   
Sbjct: 224 ------------------------------EKLKETLRQHREMALLSKKLAAIRRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L ++    +G   E  +      K   F S  ++    +SE+       + L K++
Sbjct: 251 -PVELSLDDIAYQGEDREKVV---ALFKELGFQSFLEKMESPSSEEE------KPLAKMA 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               +  +   + +                A+  +     +   +  + IA+   +    
Sbjct: 301 FTLADRVTEEMLAD---------------KAALVVEVVEENYHDAPIVGIAV-VNEHGRF 344

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  +                            +  +E   K   + K   + L   
Sbjct: 345 FLRPETALADP---------------------QFVAWLGDETKKKSMFDSKRAAVALKWK 383

Query: 480 GISM-----------------RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--I 520
           GI +                 +G +D+   + +              +++ +    E   
Sbjct: 384 GIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM--------------KQYEAVRSDEAVY 429

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K  K ++P + +    + EH +  +  I  L      +L   +   +   L++P+  ++
Sbjct: 430 GKGAKRAVPDEPV----LAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSIL 485

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P
Sbjct: 486 AEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLGVILFEKLQLP 545

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KTKTG   +T+ D+ +     + I++NIL +RQL K++STY + L   +   T++VH
Sbjct: 546 ILKKTKTGY--STSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVH 603

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILA 759
           T ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LA
Sbjct: 604 TIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLA 663

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           HIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+YGIS + LA 
Sbjct: 664 HIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQ 723

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++
Sbjct: 724 NLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNV 783

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+ E P+EE+  
Sbjct: 784 RSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMER 843

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +++   ME+A    + LRVPLKV+      W + 
Sbjct: 844 LCRLVPEVMEQA----VTLRVPLKVDYHYGPTWYDA 875


>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
 gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
          Length = 878

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/999 (31%), Positives = 500/999 (50%), Gaps = 146/999 (14%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+ +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L         +H
Sbjct: 1   MRLKKKLVLIDGSSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEE----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ P
Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVREKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK           
Sbjct: 176 EQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKG---------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++       DA
Sbjct: 226 ---------------------------------EKLKETLRQHREMALLSKKLAAIRRDA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    +G   E  +      K   F S  ++    +SE+       + L 
Sbjct: 253 ----PVELSLDDIVYQGEDREKVV---ALFKELGFQSFLEKMESPSSEEE------KPLA 299

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           K++    +  +   + +                A+  +     +   +  + IA+   + 
Sbjct: 300 KMAFTLADRVTEEMLAD---------------KAALVVEVVEENYHDAPIVGIAV-VNEH 343

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     +                            +  +E   K   + K   + L
Sbjct: 344 GRFFLRPETALADP---------------------QFVAWLGDETKKKSMFDSKRAAVAL 382

Query: 477 HRYGISM-----------------RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              GI +                 +G +D+   + +              +++ +    E
Sbjct: 383 KWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM--------------KQYEAVRPDE 428

Query: 520 --ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
               K  K ++P + +    + EH +  +  I +L      +L   +   +   L++P+ 
Sbjct: 429 AVYGKGAKRAVPDEPV----LAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLS 484

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL
Sbjct: 485 SILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKL 544

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           + P   KTKTG   +T+ D+ +     + I++NIL +RQL K++STY + L   +   T+
Sbjct: 545 QLPVLKKTKTGY--STSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTK 602

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELR 756
           +VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR
Sbjct: 603 KVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELR 662

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+YGIS + 
Sbjct: 663 VLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYG 722

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S  
Sbjct: 723 LAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRN 782

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+ E P+EE
Sbjct: 783 FNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE 842

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +    +++   ME+A    + LRVPLKV+    + W + 
Sbjct: 843 MERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTWYDA 877


>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
 gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
          Length = 876

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/996 (31%), Positives = 497/996 (49%), Gaps = 146/996 (14%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L         +H  V
Sbjct: 2   KKKLVLIDGSSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEE----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDII T
Sbjct: 57  AFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ PE++
Sbjct: 117 LAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVREKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK              
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKG------------- 223

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++       DA   
Sbjct: 224 ------------------------------EKLKETLRQHREMALLSKKLAAIRRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L ++    +G   E  +      K   F S  ++    +SE+       + L K++
Sbjct: 251 -PVELSLDDIAYQGEDREKVV---ALFKELGFQSFLEKMESPSSEEE------KPLAKMA 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               +  +   + +                A+  +     +   +  + IA+   +    
Sbjct: 301 FTLADRVTEEMLAD---------------KAALVVEVVEENYHDAPIVGIAV-VNEHGRF 344

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  +                            +  +E   K   + K   + L   
Sbjct: 345 FLRPETALADP---------------------QFVAWLGDETKKKSMFDSKRAAVALKWK 383

Query: 480 GISM-----------------RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--I 520
           GI +                 +G +D+   + +              +++ +    E   
Sbjct: 384 GIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM--------------KQYEAVRPDEAVY 429

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K  K ++P + +    + EH +  +  I  L      +L   +   +   L++P+  ++
Sbjct: 430 GKGAKRAVPDEPV----LAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSIL 485

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P
Sbjct: 486 AEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLGVILFEKLQLP 545

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KTKTG   +T+ D+ +     + I++NIL +RQL K++STY + L   +   T++VH
Sbjct: 546 VLKKTKTGY--STSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVH 603

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILA 759
           T ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LA
Sbjct: 604 TIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLA 663

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           HIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+YGIS + LA 
Sbjct: 664 HIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQ 723

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++
Sbjct: 724 NLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNV 783

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+ E P+EE+  
Sbjct: 784 RSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMER 843

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +++   ME+A    + LRVPLKV+    + W + 
Sbjct: 844 LCRLVPEVMEQA----VTLRVPLKVDYHYGSTWYDA 875


>gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1]
          Length = 926

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/988 (30%), Positives = 497/988 (50%), Gaps = 84/988 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG S + RAF+  P L+   +GL  NA+ GF N+++K+L+  + +    +  V F
Sbjct: 4   KLVLIDGHSILNRAFFGIPDLTN-SEGLHTNAVYGFLNIMFKILEEEQPD----YLTVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++++ +YK  R  + + L  Q+PL++   +A G+  IE  G+EADD++ T  
Sbjct: 59  DVSEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEADDLLGTIA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
             +E++G  V+++S D+DL+QL +    +     +      E  +   V +K+ + P + 
Sbjct: 119 KQSEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGTEIEDYNAAEVKEKYQVTPIEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PGIG KTA  ++ +YG++EN   +   +K  +  +N+ EY + 
Sbjct: 179 IDVKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKNLKEYYDL 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDC---NGPRLISFLKALEFTKLINRVATTYDCDA 296
           A++S+ L  +     I   L    L               K LEF  L+NR         
Sbjct: 239 AQMSKTLATIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNR--------- 289

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                             A+ET  ++            ++    +   +  +K+F +   
Sbjct: 290 -----------------FAVETPKNQ-----------AAEHFKLVEDRKEAEKVFAKLRG 321

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +   + I   S  K  + ++    +                      S+P  I  S   +
Sbjct: 322 RSCGFYIVPGSKKK-DSHEEEDGQMNLFAAGDMPGAD----------SEPSGIVES--AE 368

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            D   + +          T     G+N   K+ILS       +E       ++K     L
Sbjct: 369 NDAVEYCLGAAISTGEEETFFIKAGENLPAKQILSMFT---ASEAASYATLDLKPQLAAL 425

Query: 477 H------RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527
                     I +    D +L +Y+L+  ++ +    IA+ ++      + ++L      
Sbjct: 426 GLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIE 485

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
             +   +      +    + V       L   L  E + H++  ++ P++  ++ ME  G
Sbjct: 486 QAMKD-APEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFTLADMENEG 544

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I   ++ L +   +++  +  LE+ IY+ +GE+FN++SPKQLG ILF KL  P G KTKT
Sbjct: 545 IIACREALTEYGDKLAVRIAELEKQIYEEAGEEFNINSPKQLGVILFEKLSMPYGKKTKT 604

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+      + PI+ +ILE+RQL+K+KSTYAD L N+I K   R+HT ++   
Sbjct: 605 GY--STAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDG-RIHTSFNQTI 661

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S EPNLQNIP++ +LG+ IR+AF+     + + ADYSQIELR+LAH++    L
Sbjct: 662 TATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKL 721

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + +  + DIHR+ A+++F +  ++V+   RR+AK +NF I+YGIS F L+  L I + E
Sbjct: 722 IEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKKE 781

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA+YI+RYF  +P I  +++      ++ GYV T+FGRR    E++S     R+  ER A
Sbjct: 782 AAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQRSFGERVA 841

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N+PIQG+AADI + AMI VH  L    L ++++L +HDEL+ E   EE     +I+   
Sbjct: 842 MNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEE 901

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEE 975
           M  A     +L V L+++  V  NW E 
Sbjct: 902 MHGAA----DLAVTLEIDAHVGKNWYEA 925


>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
          Length = 876

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/991 (31%), Positives = 498/991 (50%), Gaps = 132/991 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+  L L+DG+S  YRAF+A PLL+    G+  NAI GF  ML K+++  +     +H
Sbjct: 1   MSKK-KLVLIDGNSIAYRAFFALPLLNNDK-GIHTNAIYGFTTMLMKIMEEEK----PTH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q P +R   +A+GI   E+  +EADDI
Sbjct: 55  VLVAFDAGKTTFRHETFTEYKGGRQKTPPELSEQFPFIRELLKAYGISHYELPNYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++GF+V +IS DKDL QL S  T +  T K     E+   EH+ +KW I  
Sbjct: 115 IGTLSKKAEQDGFSVKVISGDKDLTQLASEHTTVMITKKGITDMEEYTPEHIREKWEIDV 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  L                +KQ    E +LE 
Sbjct: 175 SQIIDMKGLMGDSSDNIPGVPGVGEKTAIKL----------------LKQFSSIEQLLES 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +                           + +G +L   L+  +   ++++   T   DA
Sbjct: 219 ID---------------------------EVSGKKLKEKLEENKEQAVMSKKLATIMTDA 251

Query: 297 ANIEPVVLDINTTENKGIAIE------TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
               PV + +     +GI  E       E+   + ++   F   + +  +  S     ++
Sbjct: 252 ----PVEITLEEVFYEGIVDEELQMLFKELGFQSLLEKFDFEGGALEELEELSFNVAHEI 307

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
             E L   S        Y +++                           +  + K I   
Sbjct: 308 TQEMLAHPSAL------YVEMLEE-------------------------NYMNGKIIGYG 336

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           +S               FI   + +  +               +++  +E   K+ ++ K
Sbjct: 337 LSNQSG---------HYFIPTDIASESEG-------------WQEWLRDESKEKVVYDAK 374

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRK 525
              + L R G+ + G   D +L +Y+++  ++  D AS+ +++    +    +   K  K
Sbjct: 375 KSIVALKRQGLELNGVSFDSLLAAYIINPAQNHEDFASVGKEYGLSSVQSDEQVYGKGAK 434

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            ++P    +   + EH    ++++  L   L+  L       ++  L+ P+  ++ +ME 
Sbjct: 435 QAVP----NLDALSEHVARKASMLWDLTEKLKTALKENHQDALFFDLELPLAFILGEMEY 490

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G+++D+  L  +  E+   L  LEE IYDL+GE FN++SPKQLG ILF KL+ P   KT
Sbjct: 491 QGVKVDRTRLTSMGKELGGKLKELEEKIYDLAGETFNINSPKQLGVILFEKLELPVIKKT 550

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG   +T+ D+ +     + I++ IL +RQL K+ STY + L   I++ + +VHT ++ 
Sbjct: 551 KTGY--STSADVLEKLQSKHEIVEYILHYRQLGKLNSTYIEGLLKVIHEDSDKVHTRFNQ 608

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKI 764
           A T TGRL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI+  
Sbjct: 609 ALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEGWVIFAADYSQIELRVLAHISGD 668

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F+   D+H   A E+F V+ + V+ +MRRHAK +NF I+YGIS F L+  L I 
Sbjct: 669 EKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAVNFGIVYGISDFGLSQSLNIT 728

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA ++I+RY   +P + EY+E      R  GYV T+  RR +  E+ S   ++R+  E
Sbjct: 729 RKEAGEFIERYLDTYPAVKEYMEDIVVEARDKGYVSTLLNRRRYIPELTSRNFNLRSFGE 788

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N PIQGSAADI ++AMI + K LE+  +  K+LLQ+HDEL+FE P+ EI     ++
Sbjct: 789 RTAMNTPIQGSAADIIKQAMIDMAKRLEEENIEAKLLLQVHDELIFEAPQSEIEKLKTMV 848

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              ME A    + L VPLKV+      W + 
Sbjct: 849 PDVMENA----VELNVPLKVDFAFGPTWYDA 875


>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
          Length = 876

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/996 (31%), Positives = 497/996 (49%), Gaps = 146/996 (14%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L         +H  V
Sbjct: 2   KKKLVLIDGSSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEE----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDII T
Sbjct: 57  AFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ PE++
Sbjct: 117 LAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPETVREKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK              
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKG------------- 223

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++       DA   
Sbjct: 224 ------------------------------EKLKETLRQHREMALLSKKLAAIRRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L ++    +G   E  +      K   F S  ++    +SE+       + L K++
Sbjct: 251 -PVELSLDDIAYQGEDREKVV---ALFKELGFQSFLEKMESPSSEEE------KPLAKMA 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               +  +   + +                A+  +     +   +  + IA+   +    
Sbjct: 301 FTLADRVTEEMLAD---------------KAALVVEVVEENYHDAPIVGIAV-VNEHGRF 344

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  +                            +  +E   K   + K   + L   
Sbjct: 345 FLRPETALADP---------------------QFVAWLGDETKKKSMFDSKRAAVALKWK 383

Query: 480 GISM-----------------RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--I 520
           GI +                 +G +D+   + +              +++ +    E   
Sbjct: 384 GIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM--------------KQYEAVRPDEAVY 429

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K  K ++P + +    + EH +  +  I  L      +L   +   +   L++P+  ++
Sbjct: 430 GKGAKRAVPDEPV----LAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSIL 485

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P
Sbjct: 486 AEMEFAGVKVDTKRLEQMGEELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLP 545

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              KTKTG   +T+ D+ +     + I++NIL +RQL K++STY + L   +   T++VH
Sbjct: 546 VLKKTKTGY--STSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVH 603

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILA 759
           T ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LA
Sbjct: 604 TIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLA 663

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           HIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+YGIS + LA 
Sbjct: 664 HIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQ 723

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   ++
Sbjct: 724 NLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNV 783

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+ E P+EE+  
Sbjct: 784 RSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMER 843

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +++   ME+A    + LRVPLKV+    + W + 
Sbjct: 844 LCRLVPEVMEQA----VTLRVPLKVDYHYGSTWYDA 875


>gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 822

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/889 (33%), Positives = 469/889 (52%), Gaps = 89/889 (10%)

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + ++G EADD+I T    +      V I + DKD+ QLV     L +T+    +D+  
Sbjct: 3   PFLCVEGVEADDVIGTLARSSAAADRPVVIPTGDKDMAQLVDGHITLVNTMTGSVLDVAG 62

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRI-- 224
           V +K+G+ PE ++   AL GD +DNIPG+PG+G KTA  LL   G   + +  N  ++  
Sbjct: 63  VKEKFGVGPEHIIDYLALMGDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVAS 122

Query: 225 ----KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
                 K     + E+ E A LS +L  ++ DVP+ I L+ L   + +   L+     L 
Sbjct: 123 LPIRGAKTLAAKLEEHREMAFLSYELATIKIDVPLDIELDQLHCGEPDRDTLMELYAEL- 181

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
                                                            +F S  +   +
Sbjct: 182 -------------------------------------------------EFKSWIEDLQR 192

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
            ++++  Q+L +E             +Y  I+       W++KL+     +F   ++  D
Sbjct: 193 -DAKRAGQELTIEE----PTAEAREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTD 247

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
           A  ++ + ++ +     +     +   ++ +     +D+         +L  LK   E+ 
Sbjct: 248 AQRAQLVGLSFAIQTH-EAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDP 297

Query: 461 HFLKIGHNIKYDKLVLHR--------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
             +K+G + K+   +L           GI ++G   D +L SYVLDS  + HD  S+  K
Sbjct: 298 DKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAK 357

Query: 512 WLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLH 567
           +L++     +EI       +  D+I+  Q   +A E +++ L+L  +   +L     L  
Sbjct: 358 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 417

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           V   ++ P++ V++++E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPK
Sbjct: 418 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPK 477

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG IL+ KL  P  +KT TGQ  T    L ++   D P+ K ++++R +SK+KSTY D 
Sbjct: 478 QLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDR 537

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  IN RT R+HT Y  A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++
Sbjct: 538 LPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLA 597

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELRI+AH+A+   L   F N LD+HR  AAE+FGV +E V+  MRR AK INF 
Sbjct: 598 ADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFG 657

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           +IYG+S F LA Q+ + R ++  Y+ RYF R+PG+  Y+E+T+    + G+VETIFGRR+
Sbjct: 658 LIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRL 717

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  +IN+   S+R   ER AINAP+QG+AADI ++AM++V+  L++  L  +++LQ+HDE
Sbjct: 718 YLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDE 777

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           LV EV E+ +   S+ I   M  A      L VPL V + V NNW E +
Sbjct: 778 LVLEVREDLVDQISEQIRPHMSGAA----ELAVPLLVEVGVGNNWDEAH 822


>gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82]
 gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82]
          Length = 930

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/995 (30%), Positives = 497/995 (49%), Gaps = 86/995 (8%)

Query: 1   MQK--ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M++     L L+DG S + RAF+  P L+   +GL  NA+ GF N+++K+L+  + +   
Sbjct: 1   MERTMGEKLVLIDGHSILNRAFFGIPDLTN-SEGLHTNAVYGFLNIMFKILEEEQPD--- 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +  V FD    TFR++++ +YK  R  + + L  Q+PL++   +A G+  IE  G+EAD
Sbjct: 57  -YLTVAFDVSEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKW 172
           D++ T    +E++G  V+++S D+DL+QL +    +     +      E  +   V +K+
Sbjct: 116 DLLGTIAKQSEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGTEIEDYNAAEVQEKY 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            + P + + ++AL GD+ DNIPG+PGIG KTA  ++ +YG++EN   +   +K  +  +N
Sbjct: 176 QVTPIEFIDVKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKN 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC---NGPRLISFLKALEFTKLINRVA 289
           + EY + A++S+ L  +     I   L    L               K LEF  L+NR  
Sbjct: 236 LKEYYDLAQMSKTLATIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNR-- 293

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
                                    A+ET  ++        F  + D+            
Sbjct: 294 ------------------------FAVETPKNQ----AAEHFKLVEDR------------ 313

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
              E  +  ++    +  +  +   K      +    +   +       M    S+P  I
Sbjct: 314 --KEAEKVFAKLRGKDCGFYIVFGDKKRDSHEEADGQMNLFA----AGDMPGADSEPSGI 367

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
             S   + D     +          T     G+N   K+ILS       +E       ++
Sbjct: 368 VES--AENDAVECCLGAAISTGEEETFFIKAGENLPAKQILSMFT---ASEAASYATLDL 422

Query: 470 KYDKLVLH------RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEI 520
           K     L          I +    D +L +Y+L+  ++ +    IA+ ++      + ++
Sbjct: 423 KPQLAALGLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADL 482

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           L        +   +      +    + V       L   L  E + H++  ++ P++  +
Sbjct: 483 LGKLTIEQAMKD-APEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFTL 541

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           + ME  GI   ++ L +   +++  +  LE+ IY+ +GE+FN++SPKQLG ILF KL  P
Sbjct: 542 ADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEFNINSPKQLGVILFEKLSMP 601

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
            G KTKTG   +TA D+      + PI+ +ILE+RQL+K+KSTYAD L N+I K   R+H
Sbjct: 602 YGKKTKTGY--STAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDG-RIH 658

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T ++   T TGRL+S EPNLQNIP++ +LG+ IR+AF+     + + ADYSQIELR+LAH
Sbjct: 659 TSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAH 718

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L + +  + DIHR+ A+++F +  ++V+   RR+AK +NF I+YGIS F L+  
Sbjct: 719 MSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQD 778

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I + EAA+YI+RYF  +P I  +++      ++ GYV T+FGRR    E++S     R
Sbjct: 779 LSISKKEAAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQR 838

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ER A+N+PIQG+AADI + AMI VH  L    L ++++L +HDEL+ E   EE    
Sbjct: 839 SFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAV 898

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +I+   M  A     +L V L+++  V  NW E 
Sbjct: 899 RKILEEEMHGAA----DLAVTLEIDAHVGKNWYEA 929


>gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone
           ASNC3046]
          Length = 976

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/1021 (29%), Positives = 508/1021 (49%), Gaps = 102/1021 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            K+  L LVDG S  +R+FYA            DG P +   GF   L    +N   E  
Sbjct: 8   SKKPILLLVDGHSLAFRSFYAFSKGIDGGLTTKDGFPTSVTYGFLKSLLDNCKNISPEG- 66

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFE 116
                + FD    TFR+E+ P+YKANR   P++    +  + +  +    +P  +  GFE
Sbjct: 67  ---VCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGFE 123

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----------EKIDIE 166
           ADD++ T    A  +G+ V I+S D+DL QLV     +Y                 ++  
Sbjct: 124 ADDLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNEN 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +K G+ PE++V L+ALTGD+ DNIPGI G+G KTA  LL+E   L+ I     +I+Q
Sbjct: 184 GVKEKLGVAPERVVDLKALTGDNSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKIQQ 243

Query: 227 ---KKRR--------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
              KK +        E +      A LSR L  + T+VP+ +      L++ N   L   
Sbjct: 244 NNDKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSES 302

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           LK LE + L+ ++                                  D    T       
Sbjct: 303 LKKLELSTLLRQI----------------------------------DIFNSTFSKGGFD 328

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL-ETIGSASFKI 394
                   E+ P+      L+  S+  I   + T + + + + + +Q+L +T    S   
Sbjct: 329 KNNVAKEEEKAPKVAGNNELEN-SENKIPKINVTVVNDFELLDKLIQRLDKTNQIVSLDT 387

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T++++  +++ + I +   ++ DD        +I L  H ++  T      +++ S L+
Sbjct: 388 ETNSLNPINAELVGIGLCLGEENDDL------FYIPLG-HQTKKGTSNQLSIEDVFSKLR 440

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL 513
            + E+    K   N K+D+ +   +G+ ++G   D +L  Y+L+  +  H ++ I+ +  
Sbjct: 441 NWIEDPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLN-NQEKHGLSEISFRLF 499

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYER 571
            +      ++   +     +   +   +   +  +  ++  + +       ++L+ ++E 
Sbjct: 500 GFKPPLFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKESFSKEKDELIKLFEE 559

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+L+GE FNLSSPKQLG+
Sbjct: 560 IELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAGENFNLSSPKQLGE 619

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL        KT    +T   + +    ++ II+++++ R LSK+ STY D+LPN 
Sbjct: 620 ILFDKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLSKLLSTYIDALPNL 679

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SADYS
Sbjct: 680 INEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYS 739

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH+A    L   F  + DIH + A  IF    E++S + RR  KTINF +IYG
Sbjct: 740 QIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSEERRVGKTINFGVIYG 797

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-- 869
           +   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+  +  
Sbjct: 798 MGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKF 857

Query: 870 ----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                           D  ++ ++ +   + RAA NAPIQGS+ADI + AM+ ++K   +
Sbjct: 858 DKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIE 917

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +  KMLLQ+HDEL+FEV  + +   ++++  +ME      + L VPL V+I + +NW 
Sbjct: 918 MNIPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMEDC----VKLNVPLLVDIGIGDNWM 973

Query: 974 E 974
           E
Sbjct: 974 E 974


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/985 (31%), Positives = 495/985 (50%), Gaps = 72/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    ++D    +YR  +     PLL+ K  G  V++I GF    + L+        A +
Sbjct: 2   KKTFLIIDAFGILYRYHFIFLKRPLLNSK--GQNVSSINGFMRTYFSLINT----YPAEY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+  D    TFRNEIY +YK NR  +P+ L  Q+P++     A GI  I +  +EADDI
Sbjct: 56  TAIALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPPE 177
           + T     +KE     I S DKD++QLV     +  + K+ +    D E V +K G+ P 
Sbjct: 116 VGTIAEKNKKENIKTIIYSPDKDILQLVCDDVRVVASNKDNELMEYDEETVKEKRGVYPN 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L AL GD+ DNIPG+ G+G KTA  LL+EY +L+ I  N   IK  K +E ++E  
Sbjct: 176 QIIDLLALMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKG-KVQEKLIESK 234

Query: 238 ETARLSRKLVMLRTDV-PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           + A +S KL  +  ++    +    +     N   +   L  LE  ++ +++ +     +
Sbjct: 235 DMAYMSYKLATIEKNIKDFNLDYNEIAKNKINIEEVNKILDELELKQIRDKINSYIYGVS 294

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           +  E  V  +N T++                              +S+    K   +   
Sbjct: 295 SKKEEKVKILNNTDD------------------------------SSKSEENKEDKKEES 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            +     N  SY  I N  +++  +  + +         T  +D F    I I+ +    
Sbjct: 325 PILSAKDNKASYYLIENETELKNLLNDINSKKLVCVDFETTGLDVFKDTIIGISFAIRSN 384

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++D+S  T+ D      +  E L+        E    IGHN+KY+  ++
Sbjct: 385 E--------AFYLDVSGRTNIDKDKCIDMVFETLAK-------EDIKVIGHNLKYEYKMM 429

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
                S    + D M+ +Y+++  R  +++  +A  +LSY      +I  + K    +  
Sbjct: 430 RAINKSFGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSDITDNAKK--TLLD 487

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +    V E+A E++++  + +    P L    L  ++  ++ P++ V++ ME  G+ I  
Sbjct: 488 VPLKDVVEYACEDADITFRFYECFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISS 547

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + +K +S E S  L   ++ IY  +GE+FN+ SPKQL  ILF K+  P   KTKTG   +
Sbjct: 548 EKMKALSDEYSSLLEKTKKKIYAEAGEEFNIQSPKQLEYILFDKMGIPPTKKTKTG--FS 605

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +++         I + +L +R+ +K+K+TY D  P  IN++T R+H  ++   T TGR
Sbjct: 606 TDEEVLTELSQKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGR 665

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIP++ + G++IR  FI+     LI+ADYSQIELR+LAH +    L + F+
Sbjct: 666 LSSSEPNLQNIPVRGEEGREIRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFK 725

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N+ DIHR  A +I+ V+ E V+  MR  AK INFSIIYG + F L+ +L I R EA D+I
Sbjct: 726 NNDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFI 785

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-DEINSPKSSIRNINERAAINAP 891
           K YF  +  +  + E+    VR  GYV T+ GR       INS  +  RN  ER A+N  
Sbjct: 786 KGYFSTYSRVKPFCEEVVEEVRNKGYVRTMCGRIRDLSKTINSSNAMARNEAERMALNTL 845

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AM+++HK  ++H    K+++Q+HDELV EV E+E   A  I+   ME  
Sbjct: 846 IQGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEADKAMTIMKEIMEH- 904

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               +   VP+ V+I   N+W E +
Sbjct: 905 ---SVKTNVPITVDIHKGNSWGEVH 926


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score =  769 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/977 (34%), Positives = 507/977 (51%), Gaps = 97/977 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS   YRAF+A        DGLP NAI G   ML KLL+   K+   S    + D
Sbjct: 4   LYLIDGSGIAYRAFFALGDWMSTSDGLPTNAIYGVARMLLKLLKEYVKKGEDS-IIFVMD 62

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T+R+E+   YKA RP+ PE  + Q+P +    +  GI  + +  +EADD+IAT   
Sbjct: 63  KKTTTYRHELLESYKAQRPETPEKYIQQIPYIYEMVEKLGIKLVAMDNYEADDVIATIVS 122

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
             ++    V II++DKD+MQLV     +    +      K D + V KK G+PPEK+  L
Sbjct: 123 KKKRNYDNVYIITSDKDMMQLVKDNVYILRPEQGITEMVKYDAQQVEKKMGVPPEKIADL 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GDS DNIPG+ GIG KTA  LLQ+Y N++++  +   IK    +  +    ETA L
Sbjct: 183 LALMGDSSDNIPGVKGIGIKTAQKLLQDYDNIDDLYQHLDEIKGST-KNKLKNEKETAYL 241

Query: 243 SRKLVMLRTDVPITIPLEH--LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           S+KLV L  D PI    E   +I +      L  FLK L                     
Sbjct: 242 SKKLVQLMVDAPIEEIFEDKEIIYQGFRNN-LRDFLKKL--------------------- 279

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                         F+S+  +    ++     K+  E   +   
Sbjct: 280 -----------------------------DFNSILKELDMPDTTTNSTKVAAETKAEKKD 310

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           Y      Y    N +D ++ ++ LE     SF + T ++D + +  + IA+S    +   
Sbjct: 311 YSTKGKYYE--YNAQDYKELLKILEKYEIISFDLETSSLDPYQADIVGIALSCKPFEGYF 368

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            +  +                +  +TKEI+  L       +   IG N+KYD  VL   G
Sbjct: 369 LYLYK-------------EKDRWEITKEIVDLL------NNKKVIGQNLKYDITVLKVNG 409

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I +     D M+ +Y+L+      ++  +A+++L Y     KE++      + +  I   
Sbjct: 410 IELSKVHFDSMIAAYLLNPDSRRFNMDDLAKEYLDYKTIKYKEVMGKDIKLLTLGDIDKK 469

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +V E+A E++++  +L+ +L+PKL   +L  ++E+++   I+V+S+ME+ G+  D   L+
Sbjct: 470 RVVEYAGEDADIAYRLFEVLKPKLEEFELFELFEKIEMSTINVLSEMEMNGVYFDLKELQ 529

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++  E +K L SL   +  + G  FN +SPKQ+G++LF  L      KTK+G + T A  
Sbjct: 530 KLEEEYNKKLSSLMYEMKKIVGYDFNPNSPKQVGELLFENLGLKGKRKTKSGSYSTDADS 589

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   ++PII+ +LE+R+  K+ STY  ++P  +NK+T RVHT ++   T TGRL+S 
Sbjct: 590 LEALR-DEHPIIEKLLEYRKYQKLLSTYIIAIPKLVNKKTGRVHTSFNQTGTATGRLSSS 648

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQN+PI+ + G++IR    +      L+SADYSQIELR+LAH+     L   F N  
Sbjct: 649 EPNLQNLPIREEDGERIRSTVKAQKDDYVLLSADYSQIELRVLAHLTNDETLINAFNNGE 708

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + AA IFGV I+ V   MRR  K +NFS++YG SP+ LA  L+IP  +A D++ RY
Sbjct: 709 DIHALTAAAIFGVKIDDVDYNMRRVGKVVNFSLVYGSSPYGLAENLKIPVEDAKDFMNRY 768

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +  + EY E +     Q GYVETIFGR+     I + KS ++    R  IN PIQGS
Sbjct: 769 FKTYQKVKEYQESSLKIATQKGYVETIFGRKRFLKNIKTGKSELK----RIVINTPIQGS 824

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI+++K L       K++LQ+HDE+V E+PE+ +    +++   ME A    
Sbjct: 825 AADIMKLAMINLYKKLPKE---AKLILQVHDEVVIELPEKIVEETKKMVQDCMENA---- 877

Query: 956 INLRVPLKVNIKVSNNW 972
           + L +PLKV+I V  NW
Sbjct: 878 VKLNIPLKVDISVGKNW 894


>gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
          Length = 876

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/978 (30%), Positives = 477/978 (48%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+  GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADIAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +   I  K            
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGK------------ 224

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+  +   L+++   T + D + I
Sbjct: 225 -------------------------------KLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKNELFKKLEFKQLLADIDQSASVEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNIDFTSL----------------KEAAIHFELDGGNYLRNNILKFSLFTGEK--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYVE-----LVSWLENPNSKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
 gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
          Length = 920

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/952 (31%), Positives = 484/952 (50%), Gaps = 75/952 (7%)

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             + A+ FD    TFR+EI   YKA R + PE     +  ++    AF +P   + G+EA
Sbjct: 9   PDYAAITFDLSEPTFRHEITDTYKAGRAETPEEFTEDVENLKALLSAFQLPIFSLPGYEA 68

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP----------TTCLYDTVKEEKIDIEH 167
           DD+I T    A+ +G+ V I+S D+DL QL+ P          TT    T   ++     
Sbjct: 69  DDMIGTLAVRAKGKGYRVKILSGDQDLFQLIDPEEAIKVMYLSTTFGSKTSTTKEYGNAE 128

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V++K  I P ++V  +AL GD+ DNIPG+ GIG KTA  LL  YG+LE I  +   +K  
Sbjct: 129 VLEKLSILPSQVVDYKALCGDTSDNIPGVKGIGKKTAVKLLDTYGDLETIYASIDELKGA 188

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
             ++ +    E A  S++L  ++TDVP+   LE   LE  N   +I  LK LE    +NR
Sbjct: 189 -VKKRLETGKEDAAQSKQLAKIKTDVPLETDLETCKLEGFNPEDVIPALKQLELQHFVNR 247

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           ++                 +  + +  A     D     +    +  S       +E+T 
Sbjct: 248 LSKLQASFGGE--------SDYQPRPKAAPVPSDFPDDFEDPDLAFFS-------AEETD 292

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFH 403
               +       Q  +       +   + +++  + L+         ++   T+++D   
Sbjct: 293 AVTSMGLDSVSIQPMV-------VTTDEQLKKLAKTLKAHTDTKQPVAWDTETNSIDPLE 345

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           +  + I     +     +      +I +       + G+    + +LS LK   E++ + 
Sbjct: 346 ADLVGIGCCWGEGPTALA------YIPVGH-----TAGEQLSMETVLSALKPILEDQQYP 394

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+  N KYD+LVL R G+S+ G   D ML SYVL+   +SH+++ +A ++L  T      
Sbjct: 395 KVFQNAKYDRLVLRRAGVSLTGVVFDPMLASYVLNP-ENSHNLSDLALRYLELTTVSYTD 453

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVS 581
                  I +++ ++V ++   + +   +L  LL+  L     L  +Y  ++ P+  V++
Sbjct: 454 LVPKGKTIGEVAIAEVAQYCGSDVHTTYRLVPLLKADLQEVPDLATLYTEVELPVEPVLA 513

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           +ME TGI+ID+  L Q S ++  +L  +E+  YD +GE+FNL SPKQL ++ F KL    
Sbjct: 514 KMEATGIRIDKAYLNQFSKQLESDLAGIEKAAYDAAGEEFNLGSPKQLSELFFEKLGLDK 573

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               K     +T     +   GD+P++ +++E+R LSK+KSTY D+LP  I   T RVHT
Sbjct: 574 RKSRKNKTGYSTDAATLEKLQGDHPVVDSVVEYRTLSKLKSTYVDALPALIRPNTGRVHT 633

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            ++ A T TGRL+S  PNLQNIP +T   ++IR+AF+     +L++ADYSQIELRILAH+
Sbjct: 634 DFNQAITTTGRLSSSNPNLQNIPTRTAFSRQIRQAFLPKEGWQLVAADYSQIELRILAHL 693

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L + +    D+HR+ A  +F  + ++++ + RR AK INF +IYG+   R A ++
Sbjct: 694 SEEPILIKTYREDEDVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMGAARFAREM 753

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I R +A  +I R+  R+P + EY+++ +      GYV+TI GRR +++       +++ 
Sbjct: 754 DIHRLDAKTFIDRFNQRYPNVFEYLQQMQREAIAYGYVKTIAGRRRYFNFTTRSLQALKG 813

Query: 882 INE------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            +                   RAA NAPIQGS+ADI + AMI +H+ L+       MLLQ
Sbjct: 814 TDPTKIDLSSLRTNGYDAGLLRAAANAPIQGSSADIIKVAMIRLHELLK--GYQANMLLQ 871

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +HDEL+FEVP +E       I  +ME A    ++L VPLKV  +   NW E 
Sbjct: 872 VHDELIFEVPPDEWEELQPKIEQTMEDA----VSLAVPLKVEAQAGKNWMEA 919


>gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701]
 gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701]
          Length = 997

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/1028 (28%), Positives = 477/1028 (46%), Gaps = 85/1028 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
           M +   L LVDG S  +R+FYA            +G+P +   GF   L + ++    + 
Sbjct: 1   MAEAPMLLLVDGHSLAFRSFYAFAKGGEGGLSTKEGIPTSVTYGFLKALLENVKGLTPQG 60

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ-AFGIPAIEIQGF 115
                 + FD    TFR+E    YKA+R + PE     L  ++     A  +P     G+
Sbjct: 61  ----VVIAFDTAEPTFRHEADASYKAHRDEAPEQFFADLANLQEILAGAMDLPLCMAPGY 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----------KIDI 165
           EADD++ T    A   G+ V I+S D+DL QLV  T  +                  I  
Sbjct: 117 EADDVLGTLANRAAGAGWRVRILSGDRDLFQLVDDTRDIAVLYMGGGPYAKSSGPVTIRR 176

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           E VI K G+ PE++V L+ALTGD+ DNIPG+ G+G KTA  LL  + NL+ I     + K
Sbjct: 177 EGVIAKLGVTPEEVVDLKALTGDASDNIPGVKGVGPKTAISLLNTHRNLDGIYAALDQQK 236

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
               ++ +    E A  SR L  +  D+P+      L L   +   L   L+ LE   L 
Sbjct: 237 GA-LKKKLETDRENAYRSRMLAEILVDIPLPSEP-RLTLGAVDAAALAQRLEELELFSLA 294

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
            ++A                      +  + + +  +  +   +  SS +       +  
Sbjct: 295 RQLAAFE-------------------RAFSADHQAHQGASGSATGSSSSAPADPDALASP 335

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA----SFKIITDTMDA 401
           +       +     +          I     ++  + +L          +    T +++ 
Sbjct: 336 SVSPSVSPQPDSGQEGAPPVLEPEIIQTPAQLEALLVRLMAATDPDQPIALDTETTSLNP 395

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG-------------KNTLTKE 448
           F ++ + + +   +   D ++            ++   T              +     +
Sbjct: 396 FQAELVGVGLCWGEGSSDLAYIPIGHQPPSPAPSADLLTPASAEPPADSAVLSQQLPLDQ 455

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIAS 507
           +L+ L  + E+    K   N KYD+L+L R+G+S+ G   D +L  Y+ D+    H +  
Sbjct: 456 VLTALAPWLESARHPKTLQNAKYDRLILLRHGLSLEGVVMDTLLADYLRDANA-KHGLEV 514

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKL 565
           +A++   +T     +          +  +    +   + +V  +L  LLR +L    E L
Sbjct: 515 LAERNFGFTPTSFSELVAKGETFAAVPIAAAARYCAMDVHVTWRLTPLLRGQLQQLGEAL 574

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             + ++++ P+  V+++ME TGI+ID+  L  +S E++  L SLE    + +G +FNL+S
Sbjct: 575 PKLLDQVELPLEPVLARMEATGIRIDKPYLATLSEELAGTLASLEAGAREAAGVEFNLAS 634

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG++LF  L        KT    +T   + +   GD+P++  +LE R LSK+KSTY 
Sbjct: 635 PKQLGELLFETLGLERKKSRKTKTGWSTDAAVLEKLAGDHPVVPLVLEHRTLSKLKSTYV 694

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+     +L
Sbjct: 695 DALPALVEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEGWQL 754

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ISADYSQIELRIL H++    L + + N  D+H + A  +  ++ ++V+   RR  KTIN
Sbjct: 755 ISADYSQIELRILTHLSGEEVLVEAYANGDDVHALTARLL--LDKDEVTADERRLGKTIN 812

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F +IYG+   R A +  + +S+A +++ +Y  R+P +  ++E  +      GYVETI GR
Sbjct: 813 FGVIYGMGAQRFARETGVSQSQAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETILGR 872

Query: 866 RIHYDEIN------------------SPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           R  +                      + ++ +     RAA NAPIQGS+ADI + AM+ +
Sbjct: 873 RRPFAFDPGGLGRLRGKPPEEIELEVARRAGMEAQQLRAAANAPIQGSSADIIKLAMVQL 932

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            + L    L  ++LLQ+HDELV E   E +      +   ME A    + L VPL V+  
Sbjct: 933 DQQLRASGLPARLLLQVHDELVLEAAPEALEPVLAAVKQVMENA----VRLLVPLLVDTG 988

Query: 968 VSNNWQEE 975
           V  NW E 
Sbjct: 989 VGPNWMEA 996


>gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
          Length = 875

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/985 (31%), Positives = 498/985 (50%), Gaps = 121/985 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML ++L+  +     + 
Sbjct: 1   MTKE-KLLLLDGNSLAYRAFFALPLLTNDS-GIHTNAVYGFTTMLQRILEEEQ----PTK 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q P +R    A+GI   E   +EADDI
Sbjct: 55  ILVAFDAGKTTFRHETFTEYKGGRQKTPPELSEQFPYIRKLIDAYGIKQYEQDLYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A  +   V I+S D+DL QL +    +Y T K     E+     + +K+G+ P
Sbjct: 115 IGTLAKEASSQDMDVIIVSGDRDLTQLATEQVTVYITKKGITEIERNTPAFIAEKYGLTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  LL+E+G++                E + E 
Sbjct: 175 LQIIDMKGLMGDSSDNIPGVPGVGEKTAVKLLKEHGSV----------------EALYEA 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +T + S+                          +L++     E   ++++   T   DA
Sbjct: 219 MDTLKASKM-----------------------KEKLVA----NEEQAIMSKKLATIYTDA 251

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + +      G   E  ++     +   F SL +++     EQ       E++Q
Sbjct: 252 ----PITISLTDLAYNGPNEEELMNVW---RELGFKSLLEKSDFTVQEQEQTPFDFEQVQ 304

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           ++ Q  + +                         +  +  +         + +A+S   +
Sbjct: 305 EVRQEDLQD-----------------------VMAVHVELENEHYHTCALLGMALSDGTK 341

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                F++                            L+++ E+   +K   + K  K  L
Sbjct: 342 TQYIPFEIAAK----------------------SDILRRWLEDSSKIKYMSDSKASKAAL 379

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKE--ILKSRKSSIPID 531
            R GI + G + D++L SY+ + G S  D+A++A++  +      E    K  K ++P  
Sbjct: 380 KRAGIQLAGVDFDLVLASYINNPGLSGDDVATLARELGYYDVQADETVYGKGAKRAVP-- 437

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
                ++ +H    +  +  L   L   L   +   +Y+ L+ P+  ++ +ME  GI ++
Sbjct: 438 --EIDKLAQHVSRKAYAVWSLQPKLEALLKENEQFDLYKELELPLAAILGEMESEGITVN 495

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +  L+++  E++  L+ LE+ IY  +GE FN++SPKQLG ILF KL  P   KTKTG   
Sbjct: 496 RATLEKMGQELNDKLVVLEQEIYAEAGETFNINSPKQLGVILFDKLGLPVIKKTKTGY-- 553

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +TA D+ +    ++ II+ IL +RQL K++STY + L   I+++  +VHT +  A T TG
Sbjct: 554 STAADVLEKLKSEHAIIEYILLYRQLGKLQSTYIEGLLKEIHEKDSKVHTRFQQALTATG 613

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       L SADYSQIELR+LAH+++   L + 
Sbjct: 614 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEDWILFSADYSQIELRVLAHMSEDKNLVEA 673

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F   +D+H   A ++F V+ E+V   MRR AK +NF I+YGIS + L+  L I R EAA 
Sbjct: 674 FREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKAVNFGIVYGISDYGLSQNLDITRKEAAT 733

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I++YF  FPG+ +Y++      + NGYV TI  RR +  +I S   ++R+  ER A+N 
Sbjct: 734 FIEKYFASFPGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITSSNFNLRSFAERTAMNT 793

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L+   +  K+LLQ+HDEL+FE P+EEI    +I+   ME 
Sbjct: 794 PIQGSAADIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIAMLEKIVPEVMEN 853

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    I L VPLKV+    + W E 
Sbjct: 854 A----IELSVPLKVDFNHGSTWYEA 874


>gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 866

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/976 (32%), Positives = 494/976 (50%), Gaps = 120/976 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +   L+DG+S +YRAFYA PLL     G+  N + GF  M  ++L   +     +H AV 
Sbjct: 3   DKFILIDGNSLLYRAFYALPLLHNSA-GVYTNGVYGFLTMFNRVLAEIQ----PTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRNE+Y +YKANR   PE L  Q  L+R    A  I  +E+QG+EADDII T 
Sbjct: 58  FDKDRSTFRNELYSEYKANRSAPPEELGGQFQLLRDVLAALNIEYLEMQGYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  AE++G    I++ D D +QLVS    +  T K     E  D + V  KWG+ PEKMV
Sbjct: 118 SKKAEEQGLKTVILTGDGDALQLVSEQVEVLLTKKGISEMELYDPQGVKDKWGVEPEKMV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+PG+G KTA  L+QE+ +LEN+  N  ++K KK            
Sbjct: 178 EIKGLMGDASDNIPGVPGVGPKTAMKLVQEFTSLENLYENLPQVKGKK------------ 225

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                          L+  L+       ++R   T + D     
Sbjct: 226 -------------------------------LVEKLEQNREQAFLSRQLATINRDME--- 251

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                 D  ++   +  L +    +      + L  +  +K   
Sbjct: 252 ----------------LDFSIEDYVMREPHYPELLELYRSLEFNNFLKILQEKEREKGMA 295

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     +   +D+   +++++   S +    +       +    + +   ++    
Sbjct: 296 PLKQEIEVLFLEREEDVTALLEEIKQGESVALYFQSSYHHPMWASLQGVFLEYSERVYQL 355

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
             +    +                     L ++K   E+    K  HN K+ +++L R+G
Sbjct: 356 KLEAGDDYK--------------------LQWIKALLESAVIKKYLHNAKFIQVLLLRHG 395

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I +RG   D ML++YV D      ++ +  +K L     E                    
Sbjct: 396 IELRGVAGDTMLLAYVDDPAFEGDELDACLKKHLQLNIAE-------------------- 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +     N I +L+  L  ++  E L  + + ++ PM +V+++ME  G+++++  L ++S
Sbjct: 436 NNLAALVNTIRELYFQLEGQIPAE-LRELLQEVEMPMSEVLARMEFCGVKVERSTLARIS 494

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E++  +   EE I++L+G  FN++SPKQLG +LF  L      K KTG + T A+ LE+
Sbjct: 495 EELASGIAGHEERIFELAGSSFNINSPKQLGKVLFEDLGLRVIKKGKTG-YSTGAEVLEE 553

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   ++ II +IL +RQLSKIKSTYAD+L   I+  T RVHT +  A T TGRL+S+EPN
Sbjct: 554 L-YQEHEIIAHILNYRQLSKIKSTYADALQELIHPETGRVHTIFKQAQTATGRLSSVEPN 612

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G++IR+AF++P P   +++ADYSQI+LR LAHI+    L + F++ +DIH
Sbjct: 613 LQNIPIRMEEGRRIRQAFVAPGPDWLIMAADYSQIDLRSLAHISGDERLIETFKSGVDIH 672

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A EIF V +E V  ++RR AK +NF IIYGIS F LA    + R EA  YI  Y + 
Sbjct: 673 TRTAVEIFHVPVEWVDSELRRRAKAVNFGIIYGISDFGLARDTGVSRKEARKYIDNYLNS 732

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +Y+E    F R++GYVET+  RR +  E+N+    ++    R A+N P+QG++AD
Sbjct: 733 YPGVKKYMEDIVEFGRRHGYVETLLKRRRYLPELNARNKMVQAFGRRMALNTPVQGTSAD 792

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI V + +   +L  ++LLQ+HDEL+ E+P  E+   S ++   ME AC    +L
Sbjct: 793 IIKLAMIKVDEEIRKRRLQARLLLQVHDELLLELPRTELEEVSGLLRDCMENAC----SL 848

Query: 959 RVPLKVNIKVSNNWQE 974
           +VPL+V++K   NW E
Sbjct: 849 KVPLEVSLKTGPNWYE 864


>gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
 gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
          Length = 886

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/985 (31%), Positives = 507/985 (51%), Gaps = 115/985 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA           DGL  NAI  F NML  ++    K++  ++
Sbjct: 3   QKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR E+Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + + E  G+ V I++ D+DL QL S  T +  T       E    +H+ +  G+ P
Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPDHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E +  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSIEELYEHVDEMKKSKLKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +                                              + +   T D D+
Sbjct: 239 KD-------------------------------------------KAFLAKKLATIDRDS 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV +++  T+ +   IE   +    +   +F +    T   +SEQ           
Sbjct: 256 ----PVEVNLADTKLQEPNIEDLRNLYERLGFKKFLAELGSTGTTSSEQE---------- 301

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 I    Y ++ N   ++  + K+      +F +     +   +     ++   ++
Sbjct: 302 ------IEKYEYLELTNENIVE--LDKISE-KEVTFYLAMLGDNYHLAPIEGFSLKVGNK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              +   V                            L+K  E++   K   +IK   + L
Sbjct: 353 IYVSKDPVLLQENP----------------------LRKMLEDKTIKKNVFDIKRTYVGL 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDK 532
           HR  +   G + D++L SY++++  +S+D+  +A  +  Y+ K   E+    K       
Sbjct: 391 HRLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDDYSVKTDLEVYGKGKKQ---AV 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             D++  EH      VI +L   L  KL   +   +YE ++ P+  V+++MEITGI+++ 
Sbjct: 448 PDDNEFFEHLAAKVAVIEKLKTPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q+  + +  L  LE  IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG + T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTG-YST 566

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LEQ+    +PI+  IL++RQ++KI++TY   L   I     R+HT Y    T TGR
Sbjct: 567 SVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKGLLECIQPDG-RIHTRYLQTLTATGR 624

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIP +T+ G++IR+AF+       + S DYSQ+ELR+LAH++    + + F
Sbjct: 625 LSSVDPNLQNIPTRTNEGKQIRKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEAF 684

Query: 772 ENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           ++  DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R +A  
Sbjct: 685 KSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKT 744

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+ YF ++P I  Y++      R+NGY ETI  RR +  +I+S   ++R+  ER AIN+
Sbjct: 745 FIENYFEQYPQIKNYMDDAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINS 804

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI++ K L++  L TKM+LQ+HDEL+F+VP++E+ T  +I+   M+ 
Sbjct: 805 PIQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQS 864

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPL  +    +NW + 
Sbjct: 865 A----VKLDVPLIADSNWGHNWYDA 885


>gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 750

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/803 (36%), Positives = 448/803 (55%), Gaps = 65/803 (8%)

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAET 239
            GDS DNIPG+PG+G KTA  LLQ  G L+ +  N  +I        K     + +  + 
Sbjct: 1   MGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNKDV 60

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS KL  ++TDV + +  + L +   +  +L       EF + +  V      D+   
Sbjct: 61  AYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWLADVEAGKWLDSKKD 120

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P                       T +TS  S ++  T+                    
Sbjct: 121 RP-----------------------TGQTSSQSFVAADTAPTAE---------------V 142

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              ++ ++Y  I++ K +  W+++L+     +F   TD +D      I ++ +     + 
Sbjct: 143 TAVLSQENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPG-EA 201

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               +   ++D      +D          +L+ LK   E++  LK+G N+K+DK +L RY
Sbjct: 202 AYLPLAHDYLDAPPQLDRD---------WVLATLKPLLEDDKALKVGQNLKFDKSMLARY 252

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
           GI ++G   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I+ 
Sbjct: 253 GIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL 312

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ++
Sbjct: 313 EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNI 372

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T  
Sbjct: 373 LAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNE 432

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGRL+
Sbjct: 433 EVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGRLS 491

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++ + G++IR+AFI+P    +++ADYSQIELRI+AH+++   L   F   
Sbjct: 492 SRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAG 551

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AAE+FG  +EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  
Sbjct: 552 QDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDL 611

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+QG
Sbjct: 612 YFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQG 671

Query: 895 SAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           +AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+   
Sbjct: 672 TAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELMEQ--- 728

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
             + L VPLKV++ V  NW + +
Sbjct: 729 -SMQLAVPLKVDVGVGANWDQAH 750


>gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
 gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
          Length = 877

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/997 (31%), Positives = 498/997 (49%), Gaps = 147/997 (14%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DGSS  YRAF+A PLL     G+  NA+ GF  ML K+L         +H  V
Sbjct: 2   KKKLVLIDGSSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEE----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + +YK  R + P  L  Q PL+R   +A+ IPA E++ +EADDII T
Sbjct: 57  AFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EGF V +IS D+DL QL SP   +  T K     E    E V +K+G+ PE++
Sbjct: 117 LAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPEAVREKYGLTPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK              
Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKG------------- 223

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++       DA   
Sbjct: 224 ------------------------------EKLKETLRQHREMALLSKKLAAIRRDA--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L ++    +G   E  +      K   F S  ++    +SE+       + L K++
Sbjct: 251 -PVELSLDDIAYQGEDREKVV---ALFKELGFQSFLEKMESPSSEEE------KPLAKMA 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               +  +   + +                A+  +     +   +  + IA+   +    
Sbjct: 301 FTLADRVTEEMLAD---------------KAALVVEVVEENYHDAPIVGIAV-VNEHGRF 344

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  +                            +  +E   K   + K   + L   
Sbjct: 345 FLRPETALADP---------------------QFVAWLGDETKKKSMFDSKRAAVALKWK 383

Query: 480 GISM-----------------RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--I 520
           GI +                 +G +D+   + +              +++ +    E   
Sbjct: 384 GIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKM--------------KQYEAVRPDEAVY 429

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            K  K ++P + +    + EH +  +  I  L      +L   +   +   L++P+  ++
Sbjct: 430 GKGAKRAVPDEPV----LAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSIL 485

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           ++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P
Sbjct: 486 AEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLGVILFEKLQLP 545

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE-WRQLSKIKSTYADSLPNHINKRTQRV 699
              K+KTG   +T+ D+ +     + I++NIL+ +RQL K++STY + L   +   T++V
Sbjct: 546 VLKKSKTGY--STSADVLEKLAPYHEIVENILQHYRQLGKLQSTYIEGLLKVVRPDTKKV 603

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRIL 758
           HT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+L
Sbjct: 604 HTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVL 663

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +NF I+YGIS + LA
Sbjct: 664 AHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLA 723

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  RR +  +I S   +
Sbjct: 724 QNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFN 783

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R+  ER A+N PIQGSAADI ++AMI ++  L++ +L  ++LLQ+HDEL+ E P+EE+ 
Sbjct: 784 VRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEME 843

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              +++   ME+A    + LRVPLKV+    + W + 
Sbjct: 844 RLCRLVPEVMEQA----VTLRVPLKVDYHYGSTWYDA 876


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/985 (31%), Positives = 495/985 (50%), Gaps = 78/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    ++D    +YR  +     PLL+ K  G  V++I GF    + L+        A +
Sbjct: 2   KKTFLIIDAFGILYRYHFIFLKRPLLNSK--GQNVSSINGFMRTYFSLINT----YPAEY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+  D    TFRNEIY +YK NR  +P+ L  Q+P++     A GI  I +  +EADDI
Sbjct: 56  VAIALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPPE 177
           + T     +KE     I S DKD++QLV     +  + K+ +    D + V +K G+ P 
Sbjct: 116 VGTIAERNKKENIKTIIYSPDKDILQLVDDDVKVVASNKDNELMEYDAQAVKEKRGVYPN 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L +L GD+ DNIPG+ G+G KTA  LL+EY +L+ I  N   IK  K +E +LE  
Sbjct: 176 QIIDLLSLMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKG-KIQEKLLESK 234

Query: 238 ETARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           + A +S KL  +  ++    +    +     N   +   L  LE  ++ +++ +      
Sbjct: 235 DMAYMSYKLATIERNIEGFNLDYNEIASSKINIDEVNKILDELELKQIRDKINSY----- 289

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                 +   +  E+K      +I++D   KT +   LS +                   
Sbjct: 290 ------IYGSSKKEDKVKISNDKINKDNDSKTEEAPILSAKD------------------ 325

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                  N  SY  I N  +++  ++ + +         T  +D F    I I+ +    
Sbjct: 326 -------NKSSYYLIENETELENLLKDINSKKLVCIDFETTGLDTFKDTIIGISFAIKSN 378

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++DLS  T     GK+     +   L    E E    IGHN+KY+  ++
Sbjct: 379 E--------AFYLDLSGRT---KIGKDKCMNLVFDTL----EKEDIKVIGHNLKYEYKMM 423

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
              G S+   + D M+ +Y+++  R  +++  +A  +LSY      ++  + K    +  
Sbjct: 424 KAIGKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSDLTDNAKK--TLLD 481

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                V E+A E+++V  + +    P L    L  ++  ++ P++ V++ ME  G+ I  
Sbjct: 482 APLKDVVEYACEDADVTFRFYECFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISS 541

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + +K +S E S  L   +E IY  +GE+FNL SPKQL  ILF K+  P   KTKTG   +
Sbjct: 542 ERMKALSDEYSSLLEKTKEKIYAEAGEEFNLQSPKQLEYILFDKMGIPPTKKTKTG--FS 599

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +++         I + +L +R+ +K+K+TY D  P  IN++T R+H  ++   T TGR
Sbjct: 600 TDEEVLTELSQKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGR 659

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIP++ + G++IR  FI      LI+ADYSQIELR+LAH +    L + F+
Sbjct: 660 LSSSEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFK 719

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N+ DIHR  A +I+ V+ E V+  MR  AK INFSIIYG + F L+ +L I + EA D+I
Sbjct: 720 NNDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKKKEAEDFI 779

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-DEINSPKSSIRNINERAAINAP 891
           K Y   +  +  + ++    VR  G+V T+ GR       INS  +  RN  ER A+N  
Sbjct: 780 KGYSSTYSRVKPFCDEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTL 839

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AM+++HK  ++H    K+++Q+HDELV EV E E   A  I+   ME  
Sbjct: 840 IQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIMEH- 898

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               +   VP+ V+I   N+W E +
Sbjct: 899 ---SVKANVPIIVDIHKGNSWGEVH 920


>gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
 gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
          Length = 976

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1021 (29%), Positives = 503/1021 (49%), Gaps = 102/1021 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            K+  L LVDG S  +R+FYA            +G P +   GF   L    +N   E  
Sbjct: 8   SKKPILLLVDGHSLAFRSFYAFSKGIDGGLTTKEGFPTSVTYGFLKSLLDNCKNISPEG- 66

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFE 116
                + FD    TFR+E+ P+YKANR   P++    +  + +  +    +P  +  G+E
Sbjct: 67  ---VCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYE 123

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----------EKIDIE 166
           ADD++ T    A  +G+ V I+S D+DL QLV     +Y                 ++  
Sbjct: 124 ADDLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNEN 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-- 224
            V +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I     +I  
Sbjct: 184 GVKEKLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKIQQ 243

Query: 225 -KQKKRR--------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
            K KK +        E +      A LSR L  + T+VP+ +      L++ N   L   
Sbjct: 244 NKDKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSES 302

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           LK LE + L+ ++                                  D    T       
Sbjct: 303 LKKLELSTLLRQI----------------------------------DIFNSTFSKGGFD 328

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL-ETIGSASFKI 394
                   E+ P+      L+  S+  I   + T + + + + + +Q+L +T    S   
Sbjct: 329 KNNVAKEEEKAPKVAGNNELEN-SENKIPKINVTVVNDFELLDKLIQRLDKTNQIVSLDT 387

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T++++   ++ + I +   ++ DD        +I L   T +++       +++ S L+
Sbjct: 388 ETNSLNPIDAELVGIGLCLGEENDDL------FYIPLGHQTKKETPD-QLSIEDVFSKLR 440

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL 513
            + E+    K   N K+D+ +   +G+ ++G   D +L  Y+L+  +  H ++ I+ +  
Sbjct: 441 NWIEDPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLN-NQEKHGLSEISFRLF 499

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYER 571
            +      ++   +     +   +   +   +  +  ++  + +       ++L+ ++E 
Sbjct: 500 GFKPPSFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKESFSKEKDELIKLFEE 559

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+L+ E FNLSSPKQLG+
Sbjct: 560 IELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELADESFNLSSPKQLGE 619

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL        KT    +T   + +    ++ II+++++ R LSK+ STY D+LPN 
Sbjct: 620 ILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLSKLLSTYIDALPNL 679

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SADYS
Sbjct: 680 INEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYS 739

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH+A    L   F  + DIH + A  IF    E++S   RR  KTINF +IYG
Sbjct: 740 QIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYG 797

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-- 869
           +   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+  +  
Sbjct: 798 MGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKF 857

Query: 870 ----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                           D   + ++ +   + RAA NAPIQGS+ADI + AM+ ++K   +
Sbjct: 858 DKNGLGRLLGKDPYEIDLQAARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFTE 917

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +  KMLLQ+HDEL+FEV  + +   ++++  +ME      + L VPL V++ + +NW 
Sbjct: 918 MNVPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMEDC----VKLNVPLLVDVGIGDNWM 973

Query: 974 E 974
           E
Sbjct: 974 E 974


>gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
 gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
          Length = 891

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/940 (35%), Positives = 506/940 (53%), Gaps = 67/940 (7%)

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           K+    + A + D    TFR++IYPDYKANRP +PE L  Q+PL+    Q  GIP ++I 
Sbjct: 2   KDVPTDYVACVVDPKGKTFRSDIYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIP 61

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKK 171
           G EADD I T T  A  EGF V I + DKD  QLV+    L +T+ ++   ++ E V KK
Sbjct: 62  GIEADDTIGTLTKKAVAEGFNVVIATGDKDFAQLVNDNVLLVNTMGKDNSWLNSEGVEKK 121

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +G+PPEK++   AL GD IDN+PG+P  G KTAA  + E+G+++ ++ NA ++K  K  E
Sbjct: 122 FGVPPEKIIDFLALMGDKIDNVPGVPKCGEKTAAKWITEFGSVDGVIENAEKVKG-KIGE 180

Query: 232 NILEYAETARLSRKLVMLRTDVPIT---IPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           N+        ++R+LV ++TD  ++     LE L L+  N   L+ +   LEF      +
Sbjct: 181 NLRSALGFLPIARQLVTIKTDADLSAEVPSLESLKLKTPNRTELLDYYNKLEFRSWAKEL 240

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
             T          V  ++   E    A +        ++       S +           
Sbjct: 241 KKT---------DVPGEVKPLETSTTAQKRAAVGAAPVEGDTLDLFSQE----------- 280

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQW---VQKLETIGSASFKIITDTMDAFHSK 405
                      Q      +   I +    ++    ++ L T     F ++ D        
Sbjct: 281 -----------QESETERTLEIITDKAKAKELAAHLEDLVTKDGFEFYVLADGSSQQEYM 329

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
           P+ +A  T D K        T ++ +    +     +            +  E++  +K 
Sbjct: 330 PVGVAFGTTDGK--------TSYVPI---DNDVLLAQGLTLGTFKEIFGRVLEHKKPIKC 378

Query: 466 GHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEIL 521
           G++ KY K V    GI++ G  +D+ML SYVL++ RS H I  +A  WL Y     +E+L
Sbjct: 379 GYDTKYMKHVFANVGINLAGVSDDVMLESYVLEAHRS-HTIEKLAANWLKYELRGEEELL 437

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVV 580
                 +   ++S  +  E A E   ++ +L  L +  L  + KL  +Y  ++ P+ DV+
Sbjct: 438 GKGAKKLSFSQVSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSDVL 497

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
            +ME  G+ ID  LL Q +A+++     LEE  ++++GE F LSSPKQLG+ILF K+   
Sbjct: 498 FKMEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVAGENFKLSSPKQLGEILFDKMGVV 557

Query: 641 ----SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
                  KT +G + T+ + L ++   + P+ K  LE+R ++K+ +TY + LP  ++ + 
Sbjct: 558 LEGAKPKKTISGNYSTSEEVLSEL-AENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKD 616

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT +  A  +TGRL+S  PNLQNIPI+T+ G+K+R AFIS    KLISADYSQIELR
Sbjct: 617 GRVHTTFEQAVAVTGRLSSTNPNLQNIPIRTEEGRKVREAFISASGCKLISADYSQIELR 676

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH++    L + F+N+ DIHR  AAE+FG   +KV+P  RR AK INF ++YG+SPF 
Sbjct: 677 IMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMYGMSPFG 736

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA  L I R EA +YI ++F RFPG+H+Y+E+T+    + GYVET FGRR+   EI++  
Sbjct: 737 LAKNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTFGRRLWLPEIHAGG 796

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           +        AAINAP+QG+AAD+ + +MI+V K +E+  L +K++LQIHDEL+ EVPE E
Sbjct: 797 ARRAAAER-AAINAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAE 855

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +    + +   M+        L VPL   + V +NW+  +
Sbjct: 856 VDLVKENLPKIMDSVT----ELHVPLIAEVGVGDNWEAAH 891


>gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S]
          Length = 875

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/982 (34%), Positives = 502/982 (51%), Gaps = 120/982 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + PE+++
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+ G +                E++LE+AE 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTV----------------ESVLEHAE- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + +G +L   +   +   ++++   T + D+   
Sbjct: 220 --------------------------EISGKKLKEKVLENKELAILSKELATINVDS--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+   + +T+  G   E  I     +K   F++L         E++ +   L       
Sbjct: 251 -PIECTVESTKYDGYQTEKVIP---LLKEMNFTTLLKNIEGDTPEESKELKEL------- 299

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                   + +IV     Q +       G  +  +  +  +   +  I            
Sbjct: 300 --------FFEIVTELKEQHF------GGKTALYVELENDNYHTANFIG----------- 334

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                      L+VH+SQ +      T E     +K+ E++   K+ ++ K   + ++R 
Sbjct: 335 -----------LTVHSSQGTYFFTKETAESSEAFRKWVESDQ-TKVVYDAKKTIVAMNRI 382

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKIS 534
           G+++ G   DIML SY+L+   S  D  S+A +      +       K  K S P + I 
Sbjct: 383 GLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAVYGKGAKRSTPEESI- 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V  H    +  I  L   L   L   + L + E L+ P+  V+++ME+ G+ +D D 
Sbjct: 442 ---VAAHLARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTDR 498

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E+   L +LE +I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG   +TA
Sbjct: 499 LEDMKVELGGRLKTLEASIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTGY--STA 556

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +   G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+
Sbjct: 557 ADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLS 616

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S++PNLQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++
Sbjct: 617 SVDPNLQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKH 676

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R EA D+I 
Sbjct: 677 DYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFID 736

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQ
Sbjct: 737 RYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQ 796

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A  
Sbjct: 797 GSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA-- 854

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + L VPLKV+    + W + 
Sbjct: 855 --VELSVPLKVDSAFGDTWYDA 874


>gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10]
 gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10]
          Length = 896

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/986 (31%), Positives = 517/986 (52%), Gaps = 104/986 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M  E+ + +VDG+S + RAFY      +    +GL  NA+ GF N+L K LQ+   +   
Sbjct: 1   MNSEDKILVVDGNSILNRAFYGLSRAAMLTTSEGLYTNAVFGFINILSKHLQDENPK--- 57

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +  V FD  A TFR++ Y  YKA R  +P  L  Q+P+++    A  I  +E++GFEAD
Sbjct: 58  -YVCVAFDLKAPTFRHKEYDQYKAQRKGMPNELAVQVPIIKQVLDAMNIARVEVEGFEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKW 172
           DI+ T +  AEK+G    +++ D+D +QL S  T +   V        ++ D E VI+K+
Sbjct: 117 DILGTVSSYAEKQGMKTILLTGDRDSLQLASNYTRIKLPVTRANKTETDEYDYEKVIEKY 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P +++ ++ L GD+ DNIPG+PGIG KTA  L++++ +LE +  N  ++ +K  RE 
Sbjct: 177 GVTPGQLIDVKGLMGDTSDNIPGVPGIGEKTALALIKKFNSLEELYENIDKVDKKGVREK 236

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +    E A + +                          RL +  + +   + +N  A   
Sbjct: 237 LENNKELAFMCK--------------------------RLATIYRKVPGVENLNDFARLE 270

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                                          +  K  +F +L +   K   E TP     
Sbjct: 271 IDKEK------------------------LYSIFKRLEFKTLIE---KFGLENTPFVEAT 303

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E L+           +  + +  ++Q ++  ++  G  S          +H  P     S
Sbjct: 304 EALKI---------EHVDVDSISELQSYISVIKLSGMVSV--------YYHVDPAG---S 343

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            LD  D   F     +   ++  S+         + +++ L++ FE++   K GH++K  
Sbjct: 344 YLD--DLCIFACNEEYAPANIIFSE-----KLTCETVVNELREIFESKDIEKYGHDLKNL 396

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIP 529
              L  +GI +     D  + +Y+L+  RS++ I+ +++  L  S T  EIL   K    
Sbjct: 397 YKYLKSHGIELENVIFDTFIAAYILEPTRSTYTISELSEDKLKQSITPVEILYD-KHGKR 455

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +++  D    E      N I  L   LRP +       +Y +++ P+++V++ ME+ G +
Sbjct: 456 LEQGQDVSSSEVCAAAVNAIYGLTQKLRPIIRDNGQDELYYKIELPLVEVLANMELRGFK 515

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D + LK  S E+   L+ LE  IY  +GE FN++SPKQLG ILF KL  P G KTKTG 
Sbjct: 516 VDVENLKAYSKELDSRLVILENEIYMQAGETFNINSPKQLGVILFEKLGLPVGKKTKTG- 574

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T+A+ LEQ++   + I++ ILE+RQL K+KSTYAD L + + ++  ++H+ ++   T 
Sbjct: 575 YSTSAEVLEQLSY-KHEIVERILEYRQLMKLKSTYADGLLSVL-EQDGKIHSNFNQTVTA 632

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLY 768
           TGR++S EPNLQNIP+K ++G+KIR+ FI       L+ ADYSQIELR+LAHI     + 
Sbjct: 633 TGRISSTEPNLQNIPVKLEMGRKIRKVFIPTNSDYVLLDADYSQIELRVLAHITGDPNMI 692

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F N+ DIH   A+++FG+  E+VS  MR  AK +NF I+YGI  F L+  + + + EA
Sbjct: 693 EAFINNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIGDFSLSKDIGVTKKEA 752

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  Y  ++  + EY+  T    ++ G+V T++ RR +  E+ S   ++R+  ER A+
Sbjct: 753 RKYIDDYLDKYSKVKEYMSDTVEKGKEFGFVTTLYNRRRYLPELKSSNFNMRSFGERVAM 812

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + +M+ V+  L+  KL +K++LQ+HDEL+ E  + E+   S+++   M
Sbjct: 813 NTPIQGSAADIIKISMVKVYTELKKRKLKSKLILQVHDELIVETEKSELEEVSKLLKDCM 872

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
           E A    + L+VPL V++K  ++W +
Sbjct: 873 ENA----VQLKVPLTVDVKHGDSWYD 894


>gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 976

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1021 (29%), Positives = 507/1021 (49%), Gaps = 102/1021 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            K+  L LVDG S  +R+FYA            +G P +   GF   L    +N   +  
Sbjct: 8   SKKPILLLVDGHSLAFRSFYAFSKGIDGGLTTKEGFPTSVTYGFLKSLLDNCKNISPQG- 66

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFE 116
                + FD    TFR+E+ P+YKANR   P++    +  + +  +    +P  +  G+E
Sbjct: 67  ---VCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYE 123

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----------EKIDIE 166
           ADD++ T    A  +G+ V I+S D+DL QLV     +Y                 ++  
Sbjct: 124 ADDLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNEN 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I     +I+Q
Sbjct: 184 GVKEKLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYKALDKIQQ 243

Query: 227 ---KKRR--------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
              KK +        E +      A LSR L  + T+VP+ +      L++ N   L   
Sbjct: 244 NNDKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSES 302

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           LK LE + L+ ++                                  D    T       
Sbjct: 303 LKKLELSTLLRQI----------------------------------DIFNSTFSKGGFD 328

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL-ETIGSASFKI 394
                   E+ P+      L+  S+  I   + T + + + + + +Q+L +T    S   
Sbjct: 329 KNNVAKEEEKAPKVSGNNELEN-SENKIPKINVTVVNDFELLDKLIQRLDKTNQIVSLDT 387

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T++++   ++ + I +   ++ DD        +I L   T +++       +++ S L+
Sbjct: 388 ETNSLNPIDAELVGIGLCLGEENDDL------FYIPLGHQTKKETP-NQLSIEDVFSKLR 440

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL 513
            + E+    K   N K+D+ +   +G+ ++G   D +L  Y+L+  +  H ++ I+ +  
Sbjct: 441 NWIEDPRKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLN-NQEKHGLSEISFRLF 499

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYER 571
            +      ++   +     +   +   +   +  +  ++  + + +     ++L+ ++E 
Sbjct: 500 GFKPPSFKETVGKNKDFSFVDIGEASIYCGYDVFLTFKIVKIFKERFSKEKDELIKLFEE 559

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+L+ E FNLSSPKQLG+
Sbjct: 560 IELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEENFNLSSPKQLGE 619

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL        KT    +T   + +    ++ II+++++ R LSK+ STY D+LPN 
Sbjct: 620 ILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLSKLLSTYIDALPNL 679

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SADYS
Sbjct: 680 INEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYS 739

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH+A    L   F  + DIH + A  IF    E++S + RR  KTINF +IYG
Sbjct: 740 QIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSEERRVGKTINFGVIYG 797

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-- 869
           +   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+  +  
Sbjct: 798 MGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKF 857

Query: 870 ----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                           D  ++ ++ +   + RAA NAPIQGS+ADI + AM+ ++K   +
Sbjct: 858 DKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIE 917

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +  KMLLQ+HDEL+FEV ++ +   ++++  +ME      + L VPL V+I   +NW 
Sbjct: 918 MNVPAKMLLQVHDELLFEVEQDSLEITTKLVKKTMEDC----VKLNVPLLVDIGTGDNWM 973

Query: 974 E 974
           E
Sbjct: 974 E 974


>gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
 gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
          Length = 896

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/988 (31%), Positives = 516/988 (52%), Gaps = 108/988 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M  E+ + +VDG+S + RAFY      +    +GL  NA+ GF N+L K LQ+   +   
Sbjct: 1   MNSEDKILVVDGNSILNRAFYGLSRAAMLTTSEGLYTNAVFGFINILSKYLQDENPK--- 57

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +  V FD  A TFR++ Y  YKA R  +P  L  Q+P+++    A  I  +E++GFEAD
Sbjct: 58  -YVCVAFDLKAPTFRHKEYDQYKAQRKGMPNELAVQVPIIKQVLDAMNIARVEVEGFEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKW 172
           DI+ T +  AEK+G    +++ D+D +QL S  T +   V        ++ D E V++K+
Sbjct: 117 DILGTVSSYAEKQGLKTILLTGDRDSLQLASGHTRIKLPVTRGNKTETDEYDYEKVVEKY 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P +++ ++ L GD+ DNIPG+PG+G KTA  L+Q++ +LE +  N  ++++K  RE 
Sbjct: 177 GVTPGQLIDVKGLMGDTSDNIPGVPGVGEKTALNLIQKFNSLEELYENIDKVEKKGVREK 236

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +    E A +S+                          RL +  + +   + ++  A T 
Sbjct: 237 LENNKELAFMSK--------------------------RLATIYRKVPGVEDLSSFART- 269

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
               A+ E +       E K +                         K   E TP     
Sbjct: 270 ---EADKEALYGIFKRLEFKTL-----------------------IEKFGLENTPFVEAT 303

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E L+           +  + +  D+Q ++  ++  G  +     D   ++          
Sbjct: 304 EALKI---------EHLDVDSISDLQSYISAIKLSGKVAVYYHVDPTGSYMDDL------ 348

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                    F     +   ++  S+         +E L+ L++ FE++   K GH++K  
Sbjct: 349 -------CIFACNEEYAPANIVFSE-----KLTCQEALNELREIFESKDIEKYGHDLKNL 396

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEIL--KSRKSS 527
              L  +GI +     D  + +Y+L+  RS++ I+ + +  L  S T  EIL  K  K  
Sbjct: 397 YKYLKSHGIELENVIFDTFIAAYILEPTRSTYTISELYEDKLKQSITPVEILYDKHGKRL 456

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
                IS S+V   A+   N I  L   LRP +       +Y  ++ P+++V++ ME+ G
Sbjct: 457 QQEQDISSSEVCAAAV---NAIYVLIQKLRPIIRDNGQDELYYEIELPLVEVLADMELRG 513

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            ++D + L+  S E+   L+ LE  IY  +GE FN++SPKQLG ILF KL  P G KTKT
Sbjct: 514 FKVDVEGLQAYSKEMDSRLVILENEIYMQAGETFNINSPKQLGVILFEKLGLPVGKKTKT 573

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T A+ LEQ++   + I++ ILE+RQL K+KSTYAD L + + ++  ++H+ ++   
Sbjct: 574 G-YSTNAEVLEQLSY-KHEIVERILEYRQLMKLKSTYADGLLSVL-EQDGKIHSNFNQTV 630

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGR++S EPNLQNIP+K ++G+KIR+ FI       L+ ADYSQIELR+LAHI   + 
Sbjct: 631 TATGRISSTEPNLQNIPVKLEMGRKIRKVFIPTNQDYVLLDADYSQIELRVLAHITDDSN 690

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F  + DIH   A+++FG+  E+VS  MR  AK +NF I+YGI  F L+  + + + 
Sbjct: 691 MIEAFLKNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIGDFSLSKDIGVTKK 750

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI  Y  ++  + EY+  T    ++ G+V T++ RR +  E+ S   ++R+  ER 
Sbjct: 751 EARQYIDDYLDKYSKVKEYMSDTVEKGKEFGFVTTLYNRRRYLPELKSSNFNMRSFGERV 810

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + +M+ V+  L+  KL +K++LQ+HDEL+ E  + E+   S+++  
Sbjct: 811 AMNTPIQGSAADIIKISMVKVYNELKKRKLKSKLILQVHDELIVETEKSELEEVSKLLKD 870

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME A    + L+VPL V++K  ++W E
Sbjct: 871 CMENA----VQLKVPLTVDVKHGDSWYE 894


>gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus]
          Length = 954

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/987 (33%), Positives = 500/987 (50%), Gaps = 120/987 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +N L L+DG+S  YRAF+A PLL     G+  NA+ GF  ML K+L   +     +H
Sbjct: 75  MMLKNKLVLIDGNSVAYRAFFALPLLHNDK-GIHTNAVYGFTMMLNKILAEEQ----PTH 129

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + DYK  R + P  L  Q PLVR   +A+ IPA E+  +EADDI
Sbjct: 130 ILVAFDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLVRELLKAYRIPAYELDHYEADDI 189

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE+EGFAV +IS D+DL QL SP   +  T K     E    E V++K+G+ P
Sbjct: 190 IGTMAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTP 249

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++V L+ L GD  DNIPG+PGIG KTA  LL+++G +EN+L +   IK           
Sbjct: 250 EQIVDLKGLMGDKSDNIPGVPGIGKKTAVKLLKQFGTVENVLASIDEIKG---------- 299

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L+      L+++       DA
Sbjct: 300 ---------------------------------EKLKENLRQYRDLALLSKQLAAICRDA 326

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV L ++    KG   E  +      +   F S  D+ +    E            
Sbjct: 327 ----PVELTLDDIVYKGEDREKVV---ALFQELGFQSFLDKMAVQTDEGE---------- 369

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 ++      + +     +          A+  +     +  H+  + IA++    
Sbjct: 370 -KPLAGMDFAIADSVTDEMLADK----------AALVVEVVGDNYHHAPIVGIALANERG 418

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +     +                                +  +E   K   + K   + L
Sbjct: 419 RFFLRPETAVADP----------------------KFLAWLGDETKKKTMFDSKRAAVAL 456

Query: 477 HRYGISMRGF---EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIP 529
           +  GI + G     D++L +Y+LD  +++ D+A++A+               K  K ++P
Sbjct: 457 NGKGIELAGVGVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKRTVP 516

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
                +  + E  +  +  I  L   L  +L   +   +   L+  +  +++ ME TG++
Sbjct: 517 ----DEPTLAEQLVRKAAAIWALEEPLMDELRRNEQDRLLTELEHALAGILANMEFTGVK 572

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D   L+Q+ AE+++ L ++E  IY+L+G++FN++SPKQLG +LF KL+ P   KTKTG 
Sbjct: 573 VDTKRLEQMGAELTEQLQAVERRIYELAGQEFNINSPKQLGTVLFDKLQLPVLKKTKTGY 632

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +T+ D+ +     + I+++IL +RQL K++STY + L   ++  T +VHT ++ A T 
Sbjct: 633 --STSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQ 690

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S+EPNLQNIPI+ + G+KIR+AF+   P   + +ADYSQIELR+LAHIA+   L 
Sbjct: 691 TGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLI 750

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F   LDIH   A +IF V+ E V+  MRR AK +NF I+YGIS + LA  L I R EA
Sbjct: 751 EAFRRWLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEA 810

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           A++I+RYF  FPG+ +Y++      +Q GYV T+  RR +  +I S   ++R   ER A+
Sbjct: 811 AEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRTFAERTAM 870

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI ++AMI +  S+ + +L  ++LLQ HDEL+ E P+EEI    +++   M
Sbjct: 871 NTPIQGSAADIIKKAMIDLSVSVREERLQARLLLQGHDELILEAPKEEIGRLCRLVPEVM 930

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    + LRVPLKV+      W + 
Sbjct: 931 EQA----VTLRVPLKVDYHYGPTWYDA 953


>gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
 gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
          Length = 976

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/1021 (29%), Positives = 504/1021 (49%), Gaps = 102/1021 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            K+  L LVDG S  +R+FYA            +G P +   GF   L    +N   E  
Sbjct: 8   SKKPILLLVDGHSLAFRSFYAFSKGIDGGLTTKEGFPTSVTYGFLKSLLDNCKNISPEG- 66

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFE 116
                + FD    TFR+E+ P+YKANR   P++    +  + +  +    +P  +  G+E
Sbjct: 67  ---VCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYE 123

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----------EKIDIE 166
           ADD++ T    A  +G+ V I+S D+DL QLV     +Y                 I+  
Sbjct: 124 ADDLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKGIYVLYMGGGPYAKSGNPTLINEN 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I     +I Q
Sbjct: 184 GVKEKLGVVPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKILQ 243

Query: 227 ---KKRR--------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
              KK +        E +      A LSR L  + T+VP+ +  +   L++ N   L   
Sbjct: 244 NNDKKYKGFIKGSVIEKLKNDKYNAYLSRDLAKINTEVPLILS-DGYELKNINQELLSES 302

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           L+ LE + L+ ++                                  D    T       
Sbjct: 303 LQKLELSTLLRQI----------------------------------DIFNSTFSKGGFD 328

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL-ETIGSASFKI 394
                   E+ P+      L    +  I   S T + N + + + +Q+L +T    S   
Sbjct: 329 KNNVAKVDEKAPKVSSKNELDNR-ENKIPKISVTIVNNFELLDKLIQRLEKTNEIVSLDT 387

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T++++   ++ + I +   ++ DD        +I L   T +++T      +E+ S ++
Sbjct: 388 ETNSLNPIDAELVGIGLCLGEETDDL------FYIPLGHQTKKETT-NQLSIEEVFSKIR 440

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL 513
            + E+    K   N K+D+ +   +G+ ++G   D +L  Y+L+  +  H ++ I+ +  
Sbjct: 441 TWIEDPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLN-NQEKHGLSEISFRLF 499

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK--LIVEKLLHVYER 571
            +      ++   +     +   +   +   +  +  ++  + + +  +  ++L+ ++E 
Sbjct: 500 GFKPPSFKETVGKNKDFSFVDIDEASVYCGYDVFLTFKIVKIFKERFSMEKDELIKLFEE 559

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+L+   FNLSSPKQLG+
Sbjct: 560 IELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEGNFNLSSPKQLGE 619

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL        KT    +T   + +    ++ II+ +++ R LSK+ STY D+LPN 
Sbjct: 620 ILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQYLIKHRTLSKLLSTYIDALPNL 679

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SADYS
Sbjct: 680 INEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYS 739

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH+A    L   F  + DIH + A  IF    E++S   RR  KTINF +IYG
Sbjct: 740 QIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYG 797

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-- 869
           +   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+  +  
Sbjct: 798 MGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKF 857

Query: 870 ----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                           D  ++ ++ +   + RAA NAPIQGS+ADI + AM+ ++K   +
Sbjct: 858 DKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQINKKFIE 917

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +  KMLLQ+HDEL+FEV  + +   ++++  +ME      + L VPL V+I + +NW 
Sbjct: 918 MNVPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMEDC----VKLNVPLLVDIGIGDNWM 973

Query: 974 E 974
           E
Sbjct: 974 E 974


>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 899

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/973 (32%), Positives = 511/973 (52%), Gaps = 88/973 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D SSFI+RA++A P LS    G+P NA+ GF  M+ K L    K+   +H A+ FD
Sbjct: 12  LTLIDASSFIFRAYHAVPPLSTSK-GVPTNAVLGFTRMVLKSL----KDLEPTHIALAFD 66

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             +   R +I P+YKA+R   PE L+PQ  L+R   +A  +P +E+ G+EADD+I T   
Sbjct: 67  KDSRAERQKIDPNYKAHREGPPEDLVPQFALIRKVVEALNLPVLEVPGWEADDVIGTLAA 126

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A+ EGF V +++ DKD +Q+V     L+D +K+       V ++ GI P +M    +L 
Sbjct: 127 RAKAEGFCVQVVTGDKDFIQIVDEDVRLFDPMKDVHTGPAEVKERLGIEPRQMRDYLSLI 186

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD++DN+P +PGIG KTAA LLQ++G+++ +L     +K+ K RE I  + E+   +R+L
Sbjct: 187 GDAVDNVPKVPGIGDKTAAALLQQFGDVDTMLARLDEVKKPKIREAISSHRESLLRARQL 246

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V   T + + + +                       +LI R                  I
Sbjct: 247 VTFNTQLDLKVTI----------------------PELIRR-----------------PI 267

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           +    + +  E E  R           L ++     S   P +  +              
Sbjct: 268 DNARARQLFTELEFFR-----------LVNELPADTSTPKPTEPAVPAAPV--------- 307

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
               I + ++++   +     GS  F +       F +  + + I+  D +        T
Sbjct: 308 --QVITSEEELKVLTEAAREAGSL-FLVPAYAGPPFATPLVGLGIALPDGR--------T 356

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485
            ++ L                 ++  L     +    K GH++K   L+L    ++++G 
Sbjct: 357 AYVPLRHDVLGSVQVPEARFAHVMGGL---LADPAVKKGGHDLKVLSLLLGGMKLTLQGA 413

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI--LKSRKSSIPIDKISDSQVQEHAI 543
            +D+ L+SY+L+  R  H +  ++++ L      +      K   P+ + S  +V     
Sbjct: 414 HDDVELLSYLLNPSRREHALPDLSRERLGLELPALPATAEGKKGRPLVEHSAEEVAAAYG 473

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             ++   +L   L  +L    L  +   ++ P++ ++++ME  G+++D  + K +S ++ 
Sbjct: 474 ARADAARRLAPRLWEELEAIGLAALARDMELPLLPILARMEQQGVKLDTAVFKTLSTQVD 533

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
               +  ++I+ L+G++FN+ S  QL  +L+ KL+ P   K KTG   +T Q++ +    
Sbjct: 534 AECETKLKHIHTLAGQEFNVGSNPQLAQVLYEKLQLPILKKGKTG--PSTDQEVLEKLAE 591

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P+   ILE+R LSK+KSTY D+LP  + K   R+HT Y  A+T TGRL+S +PNLQNI
Sbjct: 592 QHPLPGAILEYRSLSKLKSTYLDTLPGLVAKDG-RIHTTYHQAATATGRLSSSDPNLQNI 650

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++T+LG++IRRAF++    +L+SADYSQ+ELR+LAHIA+   L   F++  DIH   AA
Sbjct: 651 PVRTELGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAA 710

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           EIFGV  +KV    RR AKT+NF I YG+SP  L+T+L I   EA D I+RYF R+ GI 
Sbjct: 711 EIFGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLSTRLSISVEEARDIIERYFTRYAGIR 770

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y+E T    R+ GYVET+FGRR    ++NS   ++    ERAAIN PIQG+AAD+ ++A
Sbjct: 771 RYLEDTVERARKTGYVETMFGRRRLMADLNSKNRAVAQAAERAAINMPIQGTAADLIKKA 830

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M++V ++L   +LAT MLLQ+HDEL+FE PE E+     +    M         L+VPLK
Sbjct: 831 MLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMSSVA----TLKVPLK 886

Query: 964 VNIKVSNNWQEEN 976
           V++     W + +
Sbjct: 887 VDVGAGKTWADAH 899


>gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 875

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/982 (33%), Positives = 499/982 (50%), Gaps = 120/982 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + P +++
Sbjct: 117 TKQAEADGLEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPTQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+ G +                E++LE+AE 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTV----------------ESVLEHAE- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + +G +L   +   +   ++++   T + ++   
Sbjct: 220 --------------------------EISGKKLKEKVLENKELAVLSKELATINVNS--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+   + +T+  G   E  I     +K   F++L         E+  +           
Sbjct: 251 -PIECTVESTKYDGYQTEKVIP---LLKEMNFTTLLKNIEGGAPEEVKE----------- 295

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              +   SY  +         +++    G  +  +  +  +   +  I +AI        
Sbjct: 296 ---LKELSYEIVTE-------LKEKHFGGKTALYVELENDNYHTANFIGLAI-------- 337

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H+ Q +      T E     +++ E+    K+ ++ K   + ++R 
Sbjct: 338 --------------HSDQGTYFFTKETAENSVSFREWVES-AQTKVVYDAKKTMVAMNRM 382

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKIS 534
           G ++ G   DIML SY+L+   S  D  S+A +      +       K  K S P + I 
Sbjct: 383 GFAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAVYGKGAKRSTPEESI- 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              V  H    +  I +L   L   L   + L + E L+ P+  V++QME+ G+ +D + 
Sbjct: 442 ---VAGHLARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTER 498

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  E++  L +LE +I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG   +TA
Sbjct: 499 LENMKVELAGRLKTLETSIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTGY--STA 556

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +   G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+
Sbjct: 557 ADVLESLSGKHDIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLS 616

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S++PNLQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++
Sbjct: 617 SVDPNLQNIPIRLEEGRKIRQVFVPSKPGWKIFSADYSQVELRVLAHISEDENLIYAFKH 676

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R +A D+I 
Sbjct: 677 DYDIHTKTAMDVFHVEQEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFID 736

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  +P + EY+     F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQ
Sbjct: 737 RYFVSYPAVKEYMHDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQ 796

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI + + LE  +L  K+LLQ+HDEL+FE PE EI    +I+   ME A  
Sbjct: 797 GSAADIIKKAMILMSERLESEQLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA-- 854

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + L VPLKV+    + W + 
Sbjct: 855 --VELSVPLKVDSAFGDTWYDA 874


>gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
 gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
          Length = 976

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1021 (29%), Positives = 505/1021 (49%), Gaps = 102/1021 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            K+  L LVDG S  +R+FYA            DG P +   GF   L     ++ K   
Sbjct: 8   SKKPILLLVDGHSLAFRSFYAFSKGIDGGLTTKDGFPTSVTYGFLKSLL----DNCKNIC 63

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFE 116
                + FD    TFR+E+ P+YKANR   P++    +  + +  +    +P  +  G+E
Sbjct: 64  PEGVCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYE 123

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----------EKIDIE 166
           ADD++ T    A  +G+ V I+S D+DL QLV     +Y                 ++  
Sbjct: 124 ADDLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNEN 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I     +I+Q
Sbjct: 184 GVKEKLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALEKIQQ 243

Query: 227 ---KKRR--------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
              KK +        E +      A LSR L  + T+VP+ +  +   L++ N   L   
Sbjct: 244 NNDKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-DGYELKNINQELLSES 302

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           L+ LE + L+ ++                                  D    T       
Sbjct: 303 LQKLELSTLLRQI----------------------------------DIFNSTFSKGGFG 328

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL-ETIGSASFKI 394
                   E+ P+ L    L+  S+  I       + + + + + +++L +T    S   
Sbjct: 329 KNNLVSKEEKVPKILSNNELEN-SENKIPKIKVIIVNDFELLDKLIKRLNKTNQIVSLDT 387

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T++++   ++ + I +   ++ DD        +I L     +++       +++ S L+
Sbjct: 388 ETNSLNPIDAELVGIGLCLGEENDDL------FYIPLGHQIKKETP-NQLSIEDVFSKLR 440

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL 513
            + E+    K   N K+D+ +   +G+ ++G   D +L  Y+L+  +  H ++ I+ +  
Sbjct: 441 TWIEDPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLN-NQEKHGLSEISFRLF 499

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYER 571
            +      ++   +     +  ++   +   +  +  ++  + + +     ++L+ +++ 
Sbjct: 500 GFKPPSFKETVGKNKDFSFVDINEASIYCGYDVFLTFKIVKIFKERFSKEKDELIKLFKE 559

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +++L+ E FNLSSPKQLG+
Sbjct: 560 IELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIENKVFELADENFNLSSPKQLGE 619

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL        KT    +T   + +    ++ II+++++ R +SK+ STY D+LPN 
Sbjct: 620 ILFEKLNLDKKKSRKTKTGWSTDALVLERLVDEHEIIQHLIKHRTISKLLSTYIDALPNL 679

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SADYS
Sbjct: 680 INEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADYS 739

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH+A    L   F  + DIH + A  IF    E++S   RR  KTINF +IYG
Sbjct: 740 QIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYG 797

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-- 869
           +   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+  +  
Sbjct: 798 MGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKF 857

Query: 870 ----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                           D  ++ ++ +   + RAA NAPIQGS+ADI + AM+ ++K   +
Sbjct: 858 DKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIE 917

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                KMLLQ+HDEL+FEV  + +   ++++  +ME      + L VPL V+I + +NW 
Sbjct: 918 MNFPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMENC----VKLNVPLLVDIGIGDNWM 973

Query: 974 E 974
           E
Sbjct: 974 E 974


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/985 (31%), Positives = 498/985 (50%), Gaps = 73/985 (7%)

Query: 4   ENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    ++D    +YR  +     PL++ K  G  V++I GF    + L+        A +
Sbjct: 8   KKTFLIIDAFGILYRYHFIFLKRPLINSK--GQNVSSINGFLRTYFSLINT----YPADY 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+  D    TFR+EIY  YK NR  +P+ L  Q+P++     A GI  I +  +EADDI
Sbjct: 62  TAIALDSSRKTFRSEIYKAYKENRESMPDDLRSQIPILYNLIDALGITRIVLDNYEADDI 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPPE 177
           +       +KE     I S DKD++QLV   T +  + K+ +    DI  V +K G+ P 
Sbjct: 122 VGCIAQNNKKENIKTIIYSPDKDILQLVDENTKVIASNKDNELIEYDINMVKEKRGVYPN 181

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L +L GD+ DNIPG+ GIG KTA  LL+EY  L+NI  N   IK  K +E ++   
Sbjct: 182 QIIDLLSLMGDASDNIPGVKGIGEKTALKLLEEYDTLDNIYKNIDSIKG-KIQEKLIADK 240

Query: 238 ETARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           + A +S +L  ++ ++  + I  + +     N   +   L  LE  ++ +++ +     +
Sbjct: 241 DNAYMSYELATIKREIEELNIDYKEIEKNKINIDEVNKILDNLELKQIRDKINSYIYGSS 300

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           +  +   +                                Q SK   ++T  +   E+  
Sbjct: 301 SKKKEEKV--------------------------------QISKQTKQETNVEDNTEKTI 328

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            +S    NN  Y  I N  ++Q  +  +           T  +D    + I I+ +   +
Sbjct: 329 VVSNAKDNNAKYYLIENETELQNLLNDINAKKLVCIDFETTGLDTLTDEIIGISFAIKSK 388

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++DLS  T+ D      L  + L+        E    IGHN+KY+  ++
Sbjct: 389 E--------AFYLDLSGRTNIDKEACKKLVFDTLAK-------EDIKIIGHNLKYEYKMM 433

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
                 M   + D M+ +Y+++  R  +++  +A  +LSY      +I  + K    +  
Sbjct: 434 RAIDKKMGNMYFDTMVAAYLINPSRGRYNMDDLALSYLSYNTIKYSDITDNAKK--TLLD 491

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +    V E+A E++++  + +    P L    L  ++  ++ P+I V++ ME  G+ I  
Sbjct: 492 VELKDVVEYACEDADITFRFYEYFAPLLNTYNLEDLFFNVEMPLISVLADMEFDGVYIST 551

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + +K +S E +  L   +  IY+ +GE+FNL SPKQL  ILF KLK  S  KTKTG + T
Sbjct: 552 EKMKSLSEEYASLLEKTKAKIYEKAGEEFNLQSPKQLEYILFEKLKINSTKKTKTGAYST 611

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L ++   +  I + +L +R+ SK+K+TY D  P  ++K+T R+H  ++   T TGR
Sbjct: 612 DEEVLRELAQRE-KIAEYMLTYRKYSKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGR 670

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIP + D G+ IR  FI+     LI+ADYSQIELR+LAH +    L + F+
Sbjct: 671 LSSSEPNLQNIPARGDEGKDIRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFK 730

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N+ DIHR  A +I+ V+ E V+P MR  AK INFSIIYG + F L+ +L I R EA D+I
Sbjct: 731 NNDDIHRKTAMKIYSVSKEHVTPSMRNTAKIINFSIIYGKTAFGLSKELNISRKEADDFI 790

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-DEINSPKSSIRNINERAAINAP 891
           K YF  +  +  + EK    V+  GYV T+ GR       INS  + +RN  ER A+N  
Sbjct: 791 KGYFSTYSQVKPFCEKVIEDVKAKGYVRTMLGRIRDLSKTINSSNAVVRNEAERMALNTL 850

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAAD+ + AMI++HK  ++H    K+++Q+HDELV EV E+E   A  I+   ME  
Sbjct: 851 IQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKESDKAMTIMKEIMEH- 909

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               +   VP+ V+I    +W + +
Sbjct: 910 ---SVKTNVPITVDIHKGLSWGDIH 931


>gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus]
 gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus]
          Length = 943

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1006 (33%), Positives = 524/1006 (52%), Gaps = 93/1006 (9%)

Query: 1   MQKE----NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
           M  +    N + LVDGS ++YRA++A P L+   +G PV  I G  +M+  L+   +   
Sbjct: 1   MNSQSTIHNPIILVDGSFYMYRAYHAYPPLTT-QNGQPVWVIYGVISMIKSLITRYQ--- 56

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             SH AVIFD    TFR++++  YK+NR KIP+ L  Q+       +A GI  + I   E
Sbjct: 57  -PSHMAVIFDVSGKTFRDDLFKQYKSNRIKIPDDLSIQIIPTHKIIKAMGISVLNIPNVE 115

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+IAT      +    V I + DKD+ Q+VS    L +T+    ++   V KK+G+PP
Sbjct: 116 ADDVIATLATFYAQLNKTVLISTGDKDMAQIVSSNIILINTMSNIMLNPTEVEKKFGVPP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRR 230
             +    AL GD  DNIPG+PGIG KTA ++L + GNL  +  N + I Q      KK  
Sbjct: 176 TLIADYLALVGDRADNIPGVPGIGKKTAQIVLNQIGNLNILYQNLNNILQLNIRGRKKIY 235

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           + +L   E A L  KL  ++ DVP+      L++++ N   LI      EF   +  + +
Sbjct: 236 QALLINKELAFLCYKLATIKIDVPLQESDYKLLIQEINTQDLILLFTQYEFNTWLTDLQS 295

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
               +    E  ++    T++                                       
Sbjct: 296 GKWNNTNKYEKKIISTAYTKH------------------------------------ANT 319

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
            + +    +   +NN+S   I NT  ++ W+++          I +D  + F +  + + 
Sbjct: 320 KIIQNSSYNNLKLNNNSNYIIYNTATLKHWIKQNYHKNHLILNIHSDNSNIFTANILGLC 379

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHT---SQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
           +S         +  + I+I +S +    +Q +       K +L  L+   EN   +KIG 
Sbjct: 380 LSL-----YNIYINQYIYIPISNNIQIPNQYNNKNYLSLKNVLLNLQPILENPAVVKIGQ 434

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK--------------- 511
           N+K++  +L R+ I++ G   D++L  Y+L    +  +I     K               
Sbjct: 435 NMKFNYSLLKRHNINLSGKIFDVILEFYILYGTTNYQNIKRFLNKETFNSILNFQQSYDN 494

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYE 570
           + +Y  KEI    + S+            +AI+    I  L  +L P+L   +KL  +++
Sbjct: 495 YNNYIVKEIKNIYQESL------------YAIQLILAIFDLHQILWPQLYSNDKLKKIFQ 542

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P+I +++ +E  G+ ID+ LL   S E++ +L +L+   Y L+G  FNL S KQL 
Sbjct: 543 EIEIPLISILAHIESYGVLIDKTLLCSYSMELNVHLNTLQNQAYQLAGTSFNLDSIKQLQ 602

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           +IL+ K K P   KT +G   T  + L++++    PI K IL++R LSK+KSTY + L +
Sbjct: 603 EILYKKQKLPILKKTPSGSPSTNEEVLKKLS-HKYPIPKIILKYRSLSKLKSTYTNKLIS 661

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            +N  + R+HT Y+   T TGRL+S  PNLQNIP +   G+KIR+AFI+P    ++SADY
Sbjct: 662 MVNTESNRIHTSYNQTRTATGRLSSANPNLQNIPNRNHDGRKIRQAFIAPSHSVIVSADY 721

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELRI+AH+++   L   F +  DIH   A+EIF  ++  V+ + R  AKTINF +IY
Sbjct: 722 SQIELRIMAHLSRDFKLINDFLSGKDIHTTTASEIFVTSLNLVTNEQRHQAKTINFGLIY 781

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G+S F L+ QL +   EA  Y+ RYF R+PG+ +YI+  K+ V + GYV T+ GR+++  
Sbjct: 782 GMSAFGLSKQLSVTCYEAQKYVDRYFQRYPGVMQYIQHIKDNVYKYGYVSTLEGRKLYLP 841

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            I S   S +   ERAAINAP+QGSAADI ++AMIS++  L+   +  +M++Q+HDELVF
Sbjct: 842 NIYSKNLSKKKGAERAAINAPMQGSAADIIKKAMISINYWLKQDDIPVQMIMQVHDELVF 901

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           EV    I TA + I   ME+  +    L VPLKV+I V  NW++ +
Sbjct: 902 EVQNNFIDTAIKQIKKLMEECFI----LDVPLKVDIGVGKNWEQAH 943


>gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102]
 gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102]
          Length = 981

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1025 (28%), Positives = 482/1025 (47%), Gaps = 100/1025 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
             +  L LVDG S  +R+FYA           +DG P +   GF   L    ++ + E  
Sbjct: 5   STKPLLLLVDGHSLAFRSFYAFSKGGEGGLATNDGRPTSVTYGFLKSLLDTGKSLKPEG- 63

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ-AFGIPAIEIQGFE 116
               A+ FD    TFR++   +YKA+R   PE+    L  ++   +    +P     G+E
Sbjct: 64  ---VAIAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLDQLQEILRHKLDLPLCMAPGYE 120

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIE 166
           ADD++ T    A  +G+ V I+S D+DL QLV                        I  E
Sbjct: 121 ADDVLGTLANRAADDGWGVRILSGDRDLFQLVDDNRDIAVLYMGGGPYAKNSGPTLIREE 180

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V+ K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL++  +L+ +      ++ 
Sbjct: 181 GVLGKLGVMPNKVVDLKALTGDSSDNIPGVRGVGPKTAISLLKDNNDLDAVYATLEELEA 240

Query: 227 -----------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
                         +  +    + A LSRKL  +  D+P+      L L   N   L S 
Sbjct: 241 EGPKASRGAIKGALKGKLRNDKDNAYLSRKLAEILVDIPLPQEP-SLPLSTVNAEGLSSC 299

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           L+ LE   L+ +V                                          + + +
Sbjct: 300 LEDLELNSLLRQVG-------------------------------GFVAAFSEGGYGANA 328

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----AS 391
           D  +       P+    +R  + +   +       I +T  +Q  VQ+L T        +
Sbjct: 329 DAAAPAQPSSRPKVTKDDRGLEETVGSVPALRPQLIQDTAALQGLVQRLMTCTDTGSPVA 388

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
               T  ++ F ++ + I +   ++ D  +      +I L  + S DS       + +++
Sbjct: 389 LDTETTDLNPFKAELVGIGVCWGEELDALA------YIPLGHNGSADSQPVQLPLETVVT 442

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
            L  +  +E   K   N K+D+L+L R+G+++ G   D +L  Y+ D+    H +  +A+
Sbjct: 443 ALAPWLGSEDHPKALQNAKFDRLILMRHGLALDGVVIDTLLADYLRDAAA-KHGLELMAE 501

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHV 568
           +   +                 +      ++   + +V  +L LLLR +L     ++L +
Sbjct: 502 REFGFQPTAYSDLVGKKQTFADVPLEAASQYCAMDVHVTRRLALLLRNQLAAMGAQVLTL 561

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
            E++++P+  V+++ME TGI+ID   L+++S E+   L  LE    + +G  FNL+SPKQ
Sbjct: 562 LEQVEQPLEPVLAEMEATGIRIDVPYLQELSTEMGTTLERLETEAKEAAGVDFNLASPKQ 621

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG++LF  L        +T    +T   + +    D+P++  +LE R LSK+KSTY D+L
Sbjct: 622 LGELLFDTLGLDRKKSRRTKTGYSTDATVLEKLGDDHPVVPLVLEHRVLSKLKSTYIDAL 681

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+      L+SA
Sbjct: 682 PQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQAGWTLLSA 741

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRIL H++    L + + +  D+H + A  +  ++ ++VS   RR  KTINF +
Sbjct: 742 DYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLL--LDKDEVSADERRLGKTINFGV 799

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+   R A +  + +SEA D++ +Y  R+P +  ++E  +      GYVETI GRR  
Sbjct: 800 IYGMGAQRFARETGVSQSEAKDFLSKYKQRYPKVFAFLELQERLALSRGYVETILGRRRP 859

Query: 869 YDEIN------------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           +                      + +  +     RAA NAPIQGS+ADI + AM+ +  +
Sbjct: 860 FHFDRNGLGRLLGKEPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQAA 919

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L    L  ++LLQ+HDELV EV  + + T   ++V +ME A    + L VPL     V  
Sbjct: 920 LTSQGLPARLLLQVHDELVLEVEPDALETTRDMVVRTMENA----VKLTVPLVAETGVGA 975

Query: 971 NWQEE 975
           NW E 
Sbjct: 976 NWMEA 980


>gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
 gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
          Length = 876

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/978 (30%), Positives = 480/978 (49%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +                   
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEH------------------- 217

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                   L++ +G +L   L+  +   L+++   T + D + I
Sbjct: 218 ------------------------LDEISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T +    
Sbjct: 303 ETSFDNVDFTSL----------------KEAAIHFELDGGNYLRNNILKFSLFTGEN--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYAE-----LVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAIDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   +R A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAKRTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
 gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
          Length = 876

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/978 (31%), Positives = 480/978 (49%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +                   
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEH------------------- 217

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                   L++ +G +L   L+  +   L+++   T + D + I
Sbjct: 218 ------------------------LDEISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T +    
Sbjct: 303 ETSFDNVDFTSL----------------KEAAIHFELDGGNYLRNNILKFSLFTGEN--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYAE-----LVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAIDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
 gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
          Length = 885

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/977 (28%), Positives = 468/977 (47%), Gaps = 99/977 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++DG+S ++RA++A P      DG P NA+ GF +M  K +  +  ++        
Sbjct: 3   KTIAVIDGNSLMHRAYHAVPPTMNAPDGTPTNAVFGFLSMFLKFIDIAHPDA----VVCA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD      R      YKA RP + + L  Q P+V     A GIPA+++ G+E DDI+ T 
Sbjct: 59  FDVGKPQHRIAALEQYKAQRPPMDDDLRVQFPVVEQVLAAMGIPAVKVPGWEGDDILGTI 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
               +  G+   +++ DKD  QL S  T + +T +        D   V +K+G+ PE++ 
Sbjct: 119 AARGDAAGYDTLLVTGDKDACQLASDHTRIVNTKRGISDVVIFDPAGVEEKYGVSPEQIP 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS DNIPG+PGIG KTAA LLQ +G++E I  +   +K  K++E+I +  + A
Sbjct: 179 DFLGLMGDSSDNIPGVPGIGPKTAAKLLQRFGSIEGIYEHLDELKG-KQQESIRDNRDAA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR + +++ D+   + LE+L     N   + +  + L     + RV +    +A    
Sbjct: 238 FLSRDVAIIKCDLDFELDLENLTFPSFNEEAVTAAFEKLGMRAHLGRVLSLIGEEAP--- 294

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                        +     +      +  +  +L  Q      + + +    ER+     
Sbjct: 295 -------------VGHVVALKWQDYTRNDEAYNLIAQV----LDDSVECTGAERIGM--- 334

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                 ++T        +  ++      +    I  D   A     +  + S      D 
Sbjct: 335 ------AFTISDQENLFESGLKLAVACDTGCALIEGDRARALLGFAVGRSSSLRIAVLDA 388

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              ++ ++         D+  +  + +  L  +                           
Sbjct: 389 KEALQCVYPP-------DTAEEIHIAEADLFAM--------------------------- 414

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                F D+ L +YVLDS  S +D + +A+ +L            +  P++   D  V +
Sbjct: 415 ----NFFDVTLAAYVLDSSVSRYDFSYLAETYLE----------GALAPVEDDDDRLVMQ 460

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            A   + +       +   L+ +    VY+ +D P++ V++ ME  G  +D D L+ + +
Sbjct: 461 AACLRALI-----DPMSQALVADGTKGVYDTIDLPLVPVLAHMERIGALLDTDTLQALGS 515

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
             ++N+  + E IY+L+GEKFN+ SP+Q+  ILF  +  P   +T  G + T A+ LE +
Sbjct: 516 RTAQNIADISERIYELAGEKFNIDSPQQVSHILFDVIGLPPRKRTSRG-YSTDAKVLEDL 574

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
           +  ++ +   ILE+R+L+KI  TY D+LP        R+HT ++   T TGRL+S  PNL
Sbjct: 575 SS-EHQLPGLILEYRELAKIMGTYIDALPKLRGADG-RLHTSFNETVTTTGRLSSSNPNL 632

Query: 721 QNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G+ IR  FI   P    +SADYSQIELR+LAH++    L   F +  D H 
Sbjct: 633 QNIPVRTEFGRHIRECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFHS 692

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AA +FGV +E+V+P++R  AK +NF I+YG   F L+  LRIP  EA   I RYF  +
Sbjct: 693 ATAARVFGVPVEEVTPELRSRAKAVNFGIVYGQQAFGLSQSLRIPFGEAQAMIDRYFTAY 752

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +  Y++       + GY  T+FGR+ H  E+ +  +  R   ER A+N P+QG+AADI
Sbjct: 753 PVVRAYLDNIVAQAHEKGYALTMFGRKRHIPELRAHNAQQRAFGERIAMNHPMQGTAADI 812

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            ++AM+ V   L       KM++Q+HDEL   VP +++   S ++   ME      + L 
Sbjct: 813 IKKAMVEVDARLRHEFPNAKMMIQVHDELDLSVPADQVGEVSALLKEVMENV----VELD 868

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+++ + NW E +
Sbjct: 869 VPLIVDVQSAKNWAEAH 885


>gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 782

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/858 (34%), Positives = 449/858 (52%), Gaps = 95/858 (11%)

Query: 137 IISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
           + + DKD+ QLV+    L +T+ E  +D+  V +K+GIPP  ++   AL GD +DNIPG+
Sbjct: 2   VSTGDKDMAQLVNQHVTLVNTMTETVMDVAGVEEKFGIPPNLIIDFLALMGDKVDNIPGV 61

Query: 197 PGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAETARLSRKLVMLR 250
            G+G KTA  LLQ  G ++ I  N   I        KK  E + E  E ARLS  L  ++
Sbjct: 62  AGVGEKTALALLQNVGGVDAIYENLESIRSLDFRGAKKMPEKLAENQEAARLSYALATIK 121

Query: 251 TDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTE 310
           TDV + +              L    +     + + ++ T YD                 
Sbjct: 122 TDVDVGV-------------ALTDLQQKEIDAEALRQLYTEYD----------------- 151

Query: 311 NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK 370
                               F    D+  + +S  T  K            P+    Y  
Sbjct: 152 --------------------FHGWLDELGEGDSTITIDK------------PVVPSDYHT 179

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I   + ++ W++KL      +F   T ++D   +K + ++ +     +         ++ 
Sbjct: 180 IFTQEQLEGWLEKLSAADLFAFDTETTSLDYMQAKIVGVSFAVNAG-EAAYVPCGHDYMG 238

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489
                S +          +L+ LK   EN +  K+G N+KYDK VL  + I ++G   D 
Sbjct: 239 APEQLSLEC---------VLAALKPLLENPNKHKVGQNLKYDKHVLLNHDIDLQGIAYDT 289

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLS----YTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           ML SYV +S  + HD+ S+A+ +L     +      K     +  ++I       +A E+
Sbjct: 290 MLESYVCNSVATRHDMDSLARFYLDRSTIHFEDVAGKKGAKQLTFNQIDIEIAAPYAAED 349

Query: 546 SNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           ++V LQL   + P L  E  L HV E ++ P++ V+S++E  G  +D  LL Q S E+ +
Sbjct: 350 ADVTLQLHQAIWPTLQQEPTLQHVLESIEIPLLPVISRIERNGALVDATLLGQQSIELEQ 409

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            L  LE+  +D++GE+FNLSSPKQLG ILF KL+ P   KT  G    TA+++ Q    D
Sbjct: 410 RLKELEKEAFDIAGEEFNLSSPKQLGVILFEKLELPIIKKTPKGAPS-TAEEVLQELALD 468

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            P+ K ++E R LSK+KSTY D LP  IN  T R+HT Y  A T TGRL+S +PNLQNIP
Sbjct: 469 YPLPKVLIEHRGLSKLKSTYTDKLPQMINPATGRIHTSYHQAVTATGRLSSSDPNLQNIP 528

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           I+   G++IR+AF++P   K+++ADYSQIELRI+AH++    L + F    D+H   AAE
Sbjct: 529 IRNAEGRRIRQAFVAPKGYKILAADYSQIELRIMAHLSGDEGLLEAFNQGKDVHSATAAE 588

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV +++V+ + RR AK INF +IYG+S F LA QL + R++A  YI  YF R+PG+  
Sbjct: 589 VFGVELDQVTQEQRRRAKAINFGLIYGMSAFGLAKQLGVGRNDAQQYIDVYFERYPGVKS 648

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y++  +     +GYVET+ GRR++  EIN+     R   ER AINAP+QG+AADI +RAM
Sbjct: 649 YMDGVRQQAAVDGYVETLEGRRLYLPEINARNGMRRQAAERTAINAPMQGTAADIIKRAM 708

Query: 905 ISVHKSL------EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I+V + L      ++  +  KM++Q+HDELV EV E ++    + +   M       + L
Sbjct: 709 IAVDQWLCPTNPKDESAVNAKMIMQVHDELVLEVKESDLDAVREKLKRVM----TTTVEL 764

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V++ V +NW E +
Sbjct: 765 SVPLIVDVGVGDNWDEAH 782


>gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus]
 gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20]
 gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131]
 gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 876

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/978 (31%), Positives = 481/978 (49%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +                   
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEH------------------- 217

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                   L++ +G +L   L+  +   L+++   T + D + I
Sbjct: 218 ------------------------LDEISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNIDFTSL----------------KEAAIHFELDGGNYLRNNILKFSLFTGEK--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYVE-----LVSWLENPNSKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/985 (31%), Positives = 502/985 (50%), Gaps = 95/985 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   + L DG++ ++RA++  P L+ +  G  V A  GF ++L K+L + + +     
Sbjct: 1   MNK-PVIVLFDGTNLVHRAYHVLPPLAIRKTGEVVGAAFGFASILIKVLTDLKPD----C 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           +A+ FD    TFR+E++  YKA RP +P+ L+ QL  VR    AF +P  E  GFEADD+
Sbjct: 56  YAISFDRKGPTFRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT------VKEEKIDIEHVIKKWGI 174
           + T    A   G  V I S D D MQLV P   +               D   V  K+G+
Sbjct: 116 LGTLATRAAAAGMEVIIASGDADSMQLVGPDIRILYPGPAGSFASTSLYDEAAVRAKYGL 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE +   +AL GD  DNIPG+PGIG KTA  L++EYG +E+I  N  +I     ++ + 
Sbjct: 176 GPEHIADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKKLA 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           + AE AR S+ L  +       +PL    +E+C            +   L   +      
Sbjct: 236 DNAEVARDSKILTTIVC----DLPL-DFSIEECRA----EHYNRQKVVDLFREL------ 280

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                              +F  L D+     ++          
Sbjct: 281 -----------------------------------EFFRLIDRLPGGENQ------LQGT 299

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
               +  P     Y  + ++++I   V++L      +  +     +A  ++  A+A+S+ 
Sbjct: 300 PDMFAAAPKVETRY-TMADSQNIDSIVRRLGEAKELALAVSGTPEEAMDARLTALALSSA 358

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                                   ++       E  S L     ++   K  HN KY   
Sbjct: 359 AGDACFVLAEFIG----------SASEGQMFATEGHSGLAALLGDKKMSKTAHNAKYLMN 408

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIP 529
           +L   G  ++G + D M+ +++L  G  +  I  +  +       +    + ++ K +I 
Sbjct: 409 LLLSAGQEVKGLDFDTMIAAHLL--GEKNLAIKDLVFEHFGIEIADIENILTRNGKKTI- 465

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            +++  S+  + A   ++   +L  +   +L   +L+ ++ R++ P++ ++  ME  GI 
Sbjct: 466 FNEVQLSEAAQLA---ADYTFRLKGIFAAQLAETRLMDLFARVEMPLLPILLGMERIGIM 522

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D DLLK ++ +  + +  LEE+IY  +G  FN+ SP+QLG ILF +LK P   KTKTG 
Sbjct: 523 LDTDLLKAMAEKTGRQIFKLEEDIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG- 581

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A+ LE++  G + I+  ILE+R L K+KSTY D+LP  +N  T+R+HT ++   T 
Sbjct: 582 YSTGAEVLEELQ-GKHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTA 640

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S EPNLQNIP++ ++G++IRRAFI+PP   L++ DYSQI+LR+LAH+++   L +
Sbjct: 641 TGRLSSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIE 700

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F++  DIH   AA +  V+  KV+ + RR AKT+NF +IYG+S + L     +   EA 
Sbjct: 701 AFQSDQDIHTATAARLLNVSPSKVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLEEAD 760

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +IK YF ++P +  Y  + K   R  GYVET+ GRR +  EINSP   +R   ER AIN
Sbjct: 761 KFIKAYFEKYPRVAVYFAEIKQQARTQGYVETLLGRRRYIPEINSPNRILRESAERMAIN 820

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            P+QG++ADI + AM+ + + +++ KL +++LLQ+HDEL+FEVP  E+   S +++ +M 
Sbjct: 821 MPVQGTSADIIKLAMVRLDEKIKEEKLKSRLLLQVHDELIFEVPTAELGRMSDLLIETMS 880

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A    +   +PLKV +K   NW +
Sbjct: 881 GA----VAFEIPLKVELKSGANWGD 901


>gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
 gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
          Length = 975

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/1034 (30%), Positives = 503/1034 (48%), Gaps = 131/1034 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            +  ++L+D  +FI+RA++A           G+P  A   F NM+ KL    RK+    +
Sbjct: 9   SKPPIYLLDSMAFIFRAYHAMQRQRPMSTRTGIPTAATYVFVNMINKL----RKDFAPVY 64

Query: 61  FAVIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLVR 99
            A ++D  A   RNE+                     Y  YKANR + P  L+ Q P +R
Sbjct: 65  LAAVYDVGAPVHRNELATQLKDVKKFNIKTQQFETTEYGGYKANRVETPPDLIQQQPYIR 124

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
            A +AF IP +  +GFEADD+I T +      G  V ++S+DKD+MQLV+    + +  K
Sbjct: 125 RALEAFRIPILYYEGFEADDVIGTLSCKLSALGHHVYVVSSDKDMMQLVNDNVSILNPTK 184

Query: 160 EEKI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           +  I D   V    G+PPE+++ + AL GD+IDNIPG PGIG K +  L+Q++G +E  L
Sbjct: 185 DNLILDPAGVEGILGVPPERVIDVMALRGDAIDNIPGAPGIGDKGSVELIQQFGTVEGAL 244

Query: 219 INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
             A  +K+K  RE++L   E   LS++LV + T VPI   +E +  +  +          
Sbjct: 245 DRAEEVKKKTYRESLLNNRENIMLSKELVTIHTGVPIEYSIEAMRTQPVDNAACRELFSE 304

Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
           LEFT L+  +A   D           + + T     A ET+      ++    +   D  
Sbjct: 305 LEFTTLLKELAPAVDNTPLAFNLKATEADLTALLAAARETDP-ETGKVRGFSLAMFEDAR 363

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
           +            +E  +      ++                +       + +       
Sbjct: 364 ALAEETAAEPAENVEEAEPAPAENMS----------------LFGAPADETPAV------ 401

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
                           + KD        +  + ++  S D  G           L+   E
Sbjct: 402 --------------VEEPKDAACRLGLAVAENAAIEVSIDFAG-----------LRDALE 436

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           +    K  H++K     L  +GI++ G  +D+ML+SY+++    SH +  +  ++ +   
Sbjct: 437 DAALPKDLHDLKAVLRALEPHGITLAGVRDDVMLLSYLVNPTHGSHTLPDVVARFTNRAL 496

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL----------- 566
             ++K          +S + + E    ++N I ++  +LR ++    L+           
Sbjct: 497 TPVVKGV--------VSPTLLPE----SANAIHRVAPILRKQVEEAGLVVHEIPKDDPAL 544

Query: 567 --------------------------HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                                      VYE +D P++ V+ +ME  G++ID  +L ++S+
Sbjct: 545 GGAVTHEMLFPPAAAPVVGKADGPLVKVYETIDLPLVPVLLRMEEAGVRIDPAVLNEMSS 604

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            ++  + +L E IY  SG +FN++SPKQLGD+LF K+  P   K   G+  +TAQD+ + 
Sbjct: 605 RLAVEIDNLAEKIYADSGHRFNINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVLEE 664

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++PI   ++E RQL K+KSTY D LP+  ++   R+HT ++   T TGRL+S  PNL
Sbjct: 665 LAENHPIAALVIEHRQLQKLKSTYLDQLPSLSDREG-RIHTTFNQVGTATGRLSSTNPNL 723

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP +T +G++IR AFI+ P   L+SADYSQIELR++AH ++   L   +    DIH +
Sbjct: 724 QNIPTRTAIGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLNAYRTGQDIHTL 783

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV+ E +  + R  AK +NF I+YGISPF LA QL I +  A  YI+ Y+ R+ 
Sbjct: 784 TAAEVFGVDAETMDKETRARAKAVNFGIVYGISPFGLAAQLGIDQKVARTYIETYYDRYK 843

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           GI  +I++T   VR  G V T FGR     +I S   ++R   ER AIN P+QG+AAD+ 
Sbjct: 844 GIKRFIDETLETVRLAGAVSTHFGRVRPIPDIQSRNPNMRGFAERTAINTPLQGTAADLI 903

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMIS+ + +    L ++M LQ+HDEL+F+V   E      ++ H ME          +
Sbjct: 904 KLAMISLDREIRARGLKSRMTLQVHDELLFDVVPSEAEEMQTLVQHEMENVA----EFSI 959

Query: 961 PLKVNIKVSNNWQE 974
           P+  +I + +NW++
Sbjct: 960 PIVADIGLGDNWRD 973


>gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102]
 gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102]
          Length = 876

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/978 (31%), Positives = 483/978 (49%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E I                 E+ + 
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGIY----------------EHLD- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + +G +L   L+  +   L+++   T + D + I
Sbjct: 220 --------------------------EISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K      LSD     + E   +K F        
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQ----LLSDIDQSASVEDAIEKTF------EI 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNIDFTSL----------------KEAAIHFELDGGNYLRNNILKFSLFTGEK--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYAE-----LVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635]
 gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635]
          Length = 876

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/978 (31%), Positives = 480/978 (49%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +                      
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYE-------------------- 216

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                   L++ +G +L   L+  +   L+++   T + D + I
Sbjct: 217 -----------------------HLDEISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNVDFTSL----------------KEAAIHFELDGGNYLRNNILKFSLFTGEK--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYAE-----LVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10]
 gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10]
          Length = 881

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/987 (32%), Positives = 481/987 (48%), Gaps = 124/987 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++   +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNANGLHTNAIYAFHTMFENVMAKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR  +Y DYK  R K P     Q+P +R    A G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTAMYEDYKGGRSKTPGEFKEQMPYIRELINALGVQYYELDNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +KE F V ++S D+DL QL +    +  TVK     E     HV +K+ G+ 
Sbjct: 119 IGTLANKVDKELFDVVVLSGDRDLTQLATEHVKVDITVKGVSEIESYTPAHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ ++ L GD+ DNIPG+  IG KTA  LL+EYG++E I  +   +K+ K +EN++ 
Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKKSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A                                            +++   T D D
Sbjct: 239 DREIA-------------------------------------------FLSKQLATIDVD 255

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ +D++  + +G  +E  +     +  + F                    LE+L
Sbjct: 256 A----PIEVDVDKLKYEGKDLEKLVPFYQEMNFNSF--------------------LEKL 291

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q  ++     D    +V       +       G  +  +     +      + +A    +
Sbjct: 292 QITAEPVEMEDILFSVVEEVTEDMF------QGDTALYVEMMGDNYHLEDIVGVAWGNQE 345

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K   S + E     +                        + ++E   K  ++ K   + 
Sbjct: 346 -KIYVSNREELFESPV---------------------FTNWLKDEERKKFVYDAKRTYVA 383

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPI 530
           L+RY  + +G   D++L +Y+LD+  +++DIA +A  +    +        K  K  +P 
Sbjct: 384 LNRYTTAPKGIAFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDEAIYGKGAKKGLPA 443

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D+        H       I  L   L  +L  +    ++E ++ P+  +++ MEITGI++
Sbjct: 444 DE---EDFFAHLARKVAAITNLTPKLTEELAAKNQTALFEEMELPLSMILADMEITGIKV 500

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L Q+  E ++ L  +EE IY  +GE FNL+SPKQLG ILF K+  P   KTKTG  
Sbjct: 501 DASRLHQMKGEFAQRLHEIEEKIYAEAGETFNLNSPKQLGVILFEKMGLPVIKKTKTGY- 559

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    T T
Sbjct: 560 -STAVDVLEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGK-VHTRYVQTLTQT 617

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+  T L +
Sbjct: 618 GRLSSVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKE 677

Query: 770 VFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R  A
Sbjct: 678 AFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 737

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF ++PG+  Y+E      +  GYVET++ RR +  +INS   +IR   ER AI
Sbjct: 738 QQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLPDINSRNFNIRTFAERTAI 797

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AMI + K L++ KLA  MLLQ+HDELVFEVPE E+     ++   M
Sbjct: 798 NTPIQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDELVFEVPESELPRLDALVKEVM 857

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    + L VPL  +      W + 
Sbjct: 858 EQA----VALHVPLLTDSNWGKTWYDA 880


>gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20]
 gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20]
          Length = 881

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/987 (32%), Positives = 481/987 (48%), Gaps = 124/987 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++   +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNANGLHTNAIYAFHTMFENVMAKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR  +Y DYK  R K P     Q+P +R    A G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTAMYEDYKGGRSKTPGEFKEQMPYIRELINALGVQYYELDNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +KE F V ++S D+DL QL +    +  TVK     E     HV +K+ G+ 
Sbjct: 119 IGTLANKVDKELFDVVVLSGDRDLTQLATEHVKVDITVKGVSEIESYTPAHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ ++ L GD+ DNIPG+  IG KTA  LL+EYG++E I  +   +K+ K +EN++ 
Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKKSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A                                            +++   T D D
Sbjct: 239 DREIA-------------------------------------------FLSKQLATIDVD 255

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ +D++  + +G  +E  +     +  + F                    LE+L
Sbjct: 256 A----PIEVDVDKLKYEGKDLEKLVPFYQEMNFNSF--------------------LEKL 291

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q  ++     D    +V       +       G  +  +     +      + +A    +
Sbjct: 292 QITAEPVEMEDILFSVVEEVTEDMF------QGDTALYVEMMGDNYHLEDIVGVAWGNQE 345

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K   S + E     +                        + ++E   K  ++ K   + 
Sbjct: 346 -KIYVSNREELFESPV---------------------FTNWLKDEERKKFVYDAKRTYVA 383

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPI 530
           L+RY  + +G   D++L +Y+LD+  +++DIA +A  +    +        K  K  +P 
Sbjct: 384 LNRYTTAPKGIAFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDEAIYGKGAKKGLPA 443

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D+        H       I  L   L  +L  +    ++E ++ P+  +++ MEITGI++
Sbjct: 444 DE---EDFFAHLARKVAAITNLTPKLTEELAAKNQTALFEEMELPLSMILADMEITGIKV 500

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L Q+  E ++ L  +EE IY  +GE FNL+SPKQLG ILF K+  P   KTKTG  
Sbjct: 501 DASRLHQMKGEFAQRLHEIEEKIYAEAGETFNLNSPKQLGVILFEKMGLPVIKKTKTGY- 559

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    T T
Sbjct: 560 -STAVDVLEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGK-VHTRYVQTLTQT 617

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+  T L +
Sbjct: 618 GRLSSVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKE 677

Query: 770 VFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R  A
Sbjct: 678 AFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 737

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF ++PG+  Y+E      +  GYVET++ RR +  +INS   +IR   ER AI
Sbjct: 738 QQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLPDINSRNFNIRTFAERTAI 797

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AMI + K L++ KLA  MLLQ+HDELVFEVPE E+     ++   M
Sbjct: 798 NTPIQGSAADILKIAMIDLVKRLKEEKLAATMLLQVHDELVFEVPESELPRLDALVKEVM 857

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    + L VPL  +      W + 
Sbjct: 858 EQA----VALHVPLLTDSNWGKTWYDA 880


>gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 876

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/978 (31%), Positives = 480/978 (49%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +                      
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYE-------------------- 216

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                   L++ +G +L   L+  +   L+++   T + D + I
Sbjct: 217 -----------------------HLDEISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASIEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNIDFTSL----------------KEAAIHFELDGGNYLRNNILKFSLFTGEK--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYVE-----LVSWLENPNSKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902]
 gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902]
          Length = 998

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1020 (29%), Positives = 479/1020 (46%), Gaps = 83/1020 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R+FYA            DG P +   GF   L    +  + +      A
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATKDGRPTSVTYGFLKSLLDTGKTFKPQG----VA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT-QAFGIPAIEIQGFEADDII 121
           + FD    TFR++   +YKA+R   PE+    L  ++        +P     G+EADD++
Sbjct: 66  IAFDTAEPTFRHKADTNYKAHRDVAPEVFFQDLEQLQQILSDQMKLPLCMAPGYEADDVL 125

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKE---EKIDIEHVIKK 171
            T    A   G+ V I+S D+DL QLV  +  +           K      I  + V+ K
Sbjct: 126 GTLANRAADAGWGVRILSGDRDLFQLVDNSRDIAVLYMGGGPYAKGSGPTLIQEDGVVSK 185

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P+K+V L+ALTGDS DNIPG+ G+G KTA  LL++  +L+ +    + ++ +  + 
Sbjct: 186 LGVMPDKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNIDLDAVYATLAEVEAEGPKA 245

Query: 232 -----------NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
                       +    + A LSR L  +  D+P+    E L L+  +   L   L+ LE
Sbjct: 246 SRGAIKGALVGKLRSDRDNAYLSRMLAEILVDIPLPKDPE-LGLQQVDAEGLSDRLEDLE 304

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
              L+ +V                 + T    G       + + T K S   +  D TS 
Sbjct: 305 LNSLVRQVGGF--------------VATFSTGGYGANASSEAEKTPKRSPAKTNPDSTSS 350

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA----SFKIIT 396
           I S   PQ+   E         I       I + + +Q  VQ+L          +    T
Sbjct: 351 IGSAAAPQQGSGEA----EVGAIPPLQPQLIESNEALQALVQRLMDCTDPKAPIAVDTET 406

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
             ++ F ++ + + +   +  D  ++ +           S+ +  +    + +L  L  +
Sbjct: 407 TDLNPFKAELVGVGVCWGEANDALAY-IPIGHKP-PSELSEATPPQQLPLETVLMALSPW 464

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515
             +    K   N KYD+L+L R+G+++ G   D +L  Y+ D+    H +  ++++   +
Sbjct: 465 LASPQHPKALQNAKYDRLILLRHGLTLNGVVIDTLLADYLRDAAA-KHGLDLMSEREFGF 523

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLD 573
                            ++      +   + +V  +L L LR  L     +LL + E ++
Sbjct: 524 RPTTYGDLVGKKQTFADVAIEPASLYCGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVE 583

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
           +P+  V++QME TGI+ID   LK +S E+   L  LE +   ++   FNL+SPKQLG++L
Sbjct: 584 QPLEPVLAQMEATGIRIDVPYLKTLSDELGSTLNRLETDAKQVAEVDFNLASPKQLGELL 643

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F  L        +T    +T   + +    D+P++  +LE R LSK+KSTY D+LP  + 
Sbjct: 644 FDTLGLDRKKSRRTKTGFSTDATVLEKLENDHPVVPLVLEHRVLSKLKSTYVDALPQLVE 703

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+      L+SADYSQI
Sbjct: 704 AETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQI 763

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRIL H++    L + +    D+H + A  +  ++ + VS   RR  KTINF +IYG+ 
Sbjct: 764 ELRILTHLSGEEVLQEAYSTGDDVHALTARLL--LDKDDVSADERRLGKTINFGVIYGMG 821

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             R A +  +  +EA +++ +Y  R+P +  ++E  +      GYVETI GRR  +    
Sbjct: 822 AQRFARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFHFDR 881

Query: 874 ------------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                             + +  +     RAA NAPIQGS+ADI + AM+ +   L    
Sbjct: 882 NGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQAVLLSQG 941

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +  ++LLQ+HDELV EV  + + T   ++V++ME A    + L VPL V   V  +W E 
Sbjct: 942 IPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENA----VKLSVPLVVETGVGRDWMEA 997


>gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1]
 gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981]
 gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 876

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/978 (31%), Positives = 483/978 (49%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +                 E+ + 
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVY----------------EHLD- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + +G +L   L+  +   L+++   T + D + I
Sbjct: 220 --------------------------EISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K      LSD     + E   +K F        
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQ----LLSDIDQSASVEDAIEKTF------EI 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNIDFTSL----------------KEAAIHFELDGGNYLRNNILKFSLFTGEK--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYAE-----LVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11]
 gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46]
          Length = 876

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/978 (31%), Positives = 480/978 (49%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +                      
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYE-------------------- 216

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                   L++ +G +L   L+  +   L+++   T + D + I
Sbjct: 217 -----------------------HLDEISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNVDFTSL----------------KEAAIHFELDGGNYLRNNILKFSLFTGEK--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYAE-----LVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
 gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
          Length = 908

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/978 (31%), Positives = 511/978 (52%), Gaps = 86/978 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D S FI+RA++A P L+    G+  NA+ GF  M+ K L+  +     +H A+ 
Sbjct: 11  PTLVLIDASGFIFRAYHAIPPLTTSK-GVQTNAVLGFTRMVLKALRELK----PTHVALA 65

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  + T R +I P YKANR   PE L+PQ  L+R   +A  +P +E+ G+EADD+I T 
Sbjct: 66  FDKESRTERQKIDPTYKANREGPPEDLVPQFALIRRVVEAINVPVLEVAGWEADDVIGTL 125

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A++EGF V +++ DKD +Q+V     LYD +K+       V  + GI P +M    A
Sbjct: 126 AVKAKQEGFCVQVVTGDKDFVQIVDDDVRLYDPMKDVHTLPADVKARLGIEPGQMRDYLA 185

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD++DN+P +PGIG KTA  L+Q++G++E +L     +K+ K RENI  + E+   ++
Sbjct: 186 LIGDAVDNVPKVPGIGPKTATELIQQFGDVETLLSRLDEVKKPKIRENIASHRESLLRAK 245

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            LV  +TD+                                                  L
Sbjct: 246 VLVTFKTDL-------------------------------------------------SL 256

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D+   +     ++ +  R+   +   F+ L +   +      P ++  +         + 
Sbjct: 257 DVRMADLARRPVDAQRSRELFTELEFFALLKELPQQDGVAGAPDEVKEKPAPLAVTPRL- 315

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                 +    ++ Q    +   G+ +     +    F +K + + ++  D         
Sbjct: 316 ------VGADAELAQLAGAVREAGAVTLIPAYEG-SPFGAKLVGLGVALPDG-------- 360

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +T ++ L       +       +   +  ++  E+    K GH++K   LVL   GI++ 
Sbjct: 361 QTAYVPLRHAQLGVT---QVRPEAFTAAFREVLEDAAVKKGGHDLKALSLVLANDGITLH 417

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQV 538
           G  +D+ L+SY+L+  R  H +  ++++ L+     +      K  K    +   +  +V
Sbjct: 418 GAHDDVELLSYLLNPSRREHALVDLSRERLNTELPPLPPAAEGKRGKKDRALADHTVEEV 477

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                  +    +L   L  +L   KL  +   ++ P++ +++QME  G+ +D   L + 
Sbjct: 478 ATGFAIRAEAARRLAPELWKELEAAKLAALARDMELPLLPLLAQMERRGVLLDTAELSRT 537

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S ++   + +  + +Y  +G +FN+ S  QL ++LFT+LK P   + KTG      + LE
Sbjct: 538 SVKVDAAVEAQVKEVYRHAGREFNIGSNPQLVEVLFTELKLPIIKRGKTG-PSADQEVLE 596

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +++  ++P+   I+E+R LSK+KSTY D+LP  +     R+HT Y  A+T TGRL+S +P
Sbjct: 597 KLS-EEHPLPGAIIEYRSLSKLKSTYLDTLPTLVAADG-RIHTTYHQAATATGRLSSTDP 654

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++TDLG++IRRAF++    +L+SADYSQ+ELR+LAHIA    L + F +  DIH
Sbjct: 655 NLQNIPVRTDLGREIRRAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIH 714

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AAE+FGV  E+V  + RR AK +NF I YG+SP  L  +L I +  A D I+RYF R
Sbjct: 715 TRTAAEVFGVAKEQVDREQRRVAKMVNFGIAYGLSPHGLGARLGIAQDVARDIIERYFTR 774

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           + GI  Y+E+T +  R+ GYVET++GRR +  ++NS    +    ERAAIN PIQG+AAD
Sbjct: 775 YAGIRRYLEETVDRARKTGYVETLYGRRRYMADLNSKNRGVAQAAERAAINMPIQGTAAD 834

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + ++AM++V ++L   KL T+MLLQ+HDEL+FE P+ E+     + V +M        +L
Sbjct: 835 LIKKAMLAVDEALTAQKLRTRMLLQVHDELLFEAPDAEVEQVKALAVKAMSSVA----DL 890

Query: 959 RVPLKVNIKVSNNWQEEN 976
           +VPLKV +    +W + +
Sbjct: 891 KVPLKVEVGAGRSWADAH 908


>gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT]
 gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT]
          Length = 878

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/981 (30%), Positives = 501/981 (51%), Gaps = 110/981 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++DG S +YRAF+A P L+ K +G+  NAI GF  ML K+ +  + + I + 
Sbjct: 1   MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKMKEEIKPDYIVT- 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR++ Y +YKA R K+P+ L  Q P+V+       I   EI+GFEADD+
Sbjct: 58  ---TFDKKAPTFRHKEYEEYKAGRAKMPDELNEQFPIVKDILNKLAINIFEIEGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ D+D +QL +    +    K     E  D   +I+++G+ P
Sbjct: 115 IGTLSKFAEEKGIEVYIVTGDRDALQLATDNVRVVINKKGMSEKEIYDKNKMIEEYGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++ L GD  DNIPG+PGIG KTA  L++EYG++EN+L N   I  KK ++N    
Sbjct: 175 TEFIDVKGLMGDKSDNIPGVPGIGNKTALKLIKEYGSIENVLENVENISGKKMKQN---- 230

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                 L     +     +L +  K +     ++ + +  D D 
Sbjct: 231 ----------------------LIDYREQAILSKKLATICKDVPIEINLDEIKSKEDYDI 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             +                           ++  F SL D            +  ++   
Sbjct: 269 QGV-----------------------RLLFQSLGFKSLLDNIGDNEGLDKEDEAEVKESD 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                   N   T I   ++  ++V+ +            D      +  +   I +  +
Sbjct: 306 I-------NIKSTNINTIENFSKFVEGI------------DDSIYIQADFVDENIYSKIE 346

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            ++   + +     +S +  +D  G           LK  FENE   K+ H+ K   +VL
Sbjct: 347 FNNLYVRHKEEVFVISANEIKDKDGAKYF-----EILKNLFENEKIKKVCHDSKKVYVVL 401

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
            ++ I+ +    D  + +Y+L   +S + +  + ++ L  + K+           D I  
Sbjct: 402 KKHNIAAKNIAFDTKIAAYLLQPSKSDYMLKDLIEEMLLLSLKDD----------DNIKI 451

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++           I  ++  L   +    +  +   ++ P+I+V++ ME  G ++D++ L
Sbjct: 452 NET--------YYIKDVYEKLEKDIKKSNMEELLYTVELPLIEVLASMECEGFRVDENRL 503

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++  +  K + +LE+ I++L+ E+FN+ SPKQLG ILF KL  P   KTKTG + T A+
Sbjct: 504 TEIGEKFKKEIETLEKEIHELADEEFNIKSPKQLGKILFEKLDLPVIKKTKTG-YSTNAE 562

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    +PII+ I+E+RQ++K+ STY + L N I++   ++H+ ++   T TGRL+S
Sbjct: 563 VLEKLK-DSHPIIEKIIEYRQITKLDSTYVEGLKNVIDED-AKIHSSFNQTVTTTGRLSS 620

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPIK ++G++IR+ F+    +  + SADYSQIELRIL+HIA    L   F++ 
Sbjct: 621 TEPNLQNIPIKHEMGREIRKVFVPNNDESVIFSADYSQIELRILSHIADDEKLIDAFKHH 680

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A+E+F V I++V+P MR +AK +NF I+YGI  F L+  + + R EA +YI  
Sbjct: 681 KDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDT 740

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+P + +YI++  +    +G+V TI  R+ +  EI S    +R   ER A+N PIQG
Sbjct: 741 YFSRYPNVKKYIDEIISKAEVDGFVTTILNRKRYIPEIQSRNKIVRGFGERLAMNTPIQG 800

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+ V+  L++  L + ++LQ+HDEL+  V ++E+    +++V  ME     
Sbjct: 801 SAADIIKLAMVEVYNELKNRNLKSTLILQVHDELILNVYKDELEEVKEMVVDKMENVM-- 858

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L VPL+ ++ V   W E 
Sbjct: 859 --KLLVPLEADVNVGETWYEA 877


>gi|332981757|ref|YP_004463198.1| DNA polymerase I [Mahella australiensis 50-1 BON]
 gi|332699435|gb|AEE96376.1| DNA polymerase I [Mahella australiensis 50-1 BON]
          Length = 850

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/977 (30%), Positives = 514/977 (52%), Gaps = 136/977 (13%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG+S + RAFYA P+L+   +G   N + GF  ML+K+++  +     +H AV 
Sbjct: 3   DKIMLIDGNSLLNRAFYALPMLTNA-EGQYTNGVYGFLTMLYKVMEQEK----PTHIAVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+E Y  YKA R  +P+ +  QLP+++    A  I   E+ G+EADDI+ T 
Sbjct: 58  FDRKAPTFRHEQYDGYKAKRTGMPDEMASQLPVLKEVLTAMNIRIFEMDGYEADDILGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +A ++G  V +++ D+D +QLV P   +  T +     E  D + + +++GI PE+++
Sbjct: 118 ANMAHQKGMEVVLVTGDRDALQLVKPDVKVIITKRGITDVEVCDEQAITQRYGIKPEQLI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+PGIG KTA  L++++G+L                E++LE+ +  
Sbjct: 178 DVKGLMGDASDNIPGVPGIGEKTALRLIKQFGSL----------------ESVLEHID-- 219

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                    D +G +L   L       ++++      C      
Sbjct: 220 -------------------------DVSGDKLKKLLTEYREQAIMSKQLGAIQC----CV 250

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+  D++    KG      +      +   F SL  +  + N E+   K  +        
Sbjct: 251 PIDDDLDKCRCKGP---DAVKLKEIYQRLDFKSLLSKIPQNNDEEFADKDPIGSD----- 302

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     + N  D    +++L                          +S +++    
Sbjct: 303 ----------VYNVGDDD--IEQL-----------------------GKDLSNVNELCVY 327

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           S  V      LS+   +      ++ + +   +     N    K  ++ K   + +++  
Sbjct: 328 SNDV------LSLSEDELKVYNISVKQSVPDIVAAVLSNPKVHKHVYDAKRLIVSMNKSH 381

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I+++G + D M+ +Y+LD  +S++DI  + +++L                  +I D    
Sbjct: 382 INVKGIDFDAMIAAYLLDPSQSNYDIKRLVKQYL------------------EIDDD--- 420

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
             A  ++  + +L  ++ P++   ++  ++  ++ P+  V++ MEI G  +D  +LK+++
Sbjct: 421 --AASHAGYLWRLMNIMLPQIKENEMNALFYDIEMPLTRVLADMEINGFTVDVQMLKELA 478

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  + +  L + IY L+GE+FN++SPKQLG ILF KLK P G KTKTG   +T  ++ +
Sbjct: 479 DDFERMIDGLTKEIYALAGEEFNINSPKQLGAILFEKLKLPVGKKTKTGY--STDIEVLK 536

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + I+  I+++RQL+K+KSTY D L N  +  T ++H+ ++   T+TGR++S EPN
Sbjct: 537 QLQLQHDIVPKIIDYRQLTKLKSTYIDGLMNMADPITHKIHSKFNQTVTVTGRISSTEPN 596

Query: 720 LQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP+KT+LG +IR+AF+       L+ ADYSQIELR+LAH+++   +   F    DIH
Sbjct: 597 LQNIPVKTELGHQIRKAFVPSSSDYLLLDADYSQIELRVLAHMSQDQNMIDAFLKGQDIH 656

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+FG+ +E+V+P MR  AK +NF I+YGIS F LA  + I RSEA  YI++YF R
Sbjct: 657 ARTASEVFGIPLEQVTPLMRSRAKAVNFGIVYGISDFGLARNIGISRSEAKQYIEQYFAR 716

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           + G+  ++++T  F +++GYV T+F RR +  E+ S   ++R+  ERAA+N PIQG+AAD
Sbjct: 717 YNGVRRFMDETIQFAKKHGYVTTMFKRRRYLPELASSNRTVRSFGERAAMNTPIQGTAAD 776

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AM+ ++ +L++++  +K++LQ+HDEL+ EV  +E+     ++   ME      + +
Sbjct: 777 IIKKAMVDIYNALKENEYRSKLILQVHDELIIEVHRDEVDEIRDLVKDKMEGV----VKM 832

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPL  +I V  NW + 
Sbjct: 833 DVPLVADIHVGENWYDA 849


>gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 876

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/978 (31%), Positives = 480/978 (49%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +                      
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYE-------------------- 216

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                   L++ +G +L   L+  +   L+++   T + D + I
Sbjct: 217 -----------------------HLDEISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNVDFTSL----------------EEAAIHFELDGGNYLRNNILKFSLFTGEK--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYAE-----LVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVAFITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKVFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 908

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/980 (28%), Positives = 456/980 (46%), Gaps = 102/980 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P+ +     G P NAI GF +ML   L++       +HFA
Sbjct: 17  RPRLMLMDGHSLAYRAFFALPVENFTTATGQPTNAIYGFASMLANTLRDE----APTHFA 72

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    T+R+E + +YKANR K P+    Q+ L+     A   P   ++G+EADD+IA
Sbjct: 73  VAFDVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAPRFAVEGYEADDVIA 132

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE EGF V I++ D+D  QLVS  T +    K      +   E V++K+G+ P +
Sbjct: 133 TLATQAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVVEKYGLTPAQ 192

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA  + ++G+   ++     +K  K  +N+ ++ E
Sbjct: 193 YPDFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKG-KAGQNLRDHLE 251

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDA 296
             +L+R+L  L   V ++  +  L     +   +   L  LE     L  R+        
Sbjct: 252 AVKLNRRLTELERRVELSKGVLDLERAAYDRKAVTMILDTLEIRNPSLRERL-------- 303

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                                 +       +E  P       L+
Sbjct: 304 -------------------------------------FAVDPGAGEAEAAPVVADGVELE 326

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++ T ++  W+ +  T       +    +       +A+A S    
Sbjct: 327 G------------TVLGTGELAGWLAEHGTGPLGVATVAAWALGTGSVAEVALATSAGPA 374

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                      F    +  + +                 +  +    K+ H+ K    V 
Sbjct: 375 ---------AWFDPAELDEADE------------RAFAAWLADAGRPKVFHDAKSAMRVF 413

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             +G S+ G   D  L +Y++  GR S D+ +++ ++L    +E+  +  +   +   +D
Sbjct: 414 AEHGWSIEGVTMDTALAAYLVKPGRRSFDLDALSLEYLH---RELAPAAVADGQLAFGAD 470

Query: 536 SQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              +  A+   +  IL L      +L       +   ++ P   ++++ME  GI  D+  
Sbjct: 471 EGAEAEALMVQARAILDLGEAFGSRLEEVGAADLLRDMELPTSALLARMERHGIAADRAH 530

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +    +  +    +  +  +G +FNL SPKQL ++LF +L  P   +TKTG      
Sbjct: 531 LEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPKTKRTKTGYTTDAD 590

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                    DN +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+
Sbjct: 591 ALAWLATQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLS 648

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +
Sbjct: 649 STDPNLQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTS 708

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H   AA++F V    V  +MRR  K +++ + YG+S F L+ QL I  +EA   + 
Sbjct: 709 GEDLHTTAAAQVFAVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARALMD 768

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF R+ G+ +Y+ +  +  R  GY  T+FGRR +  +++S     R   ER A+NAPIQ
Sbjct: 769 AYFERYGGVRDYLRRVVDEARATGYTATLFGRRRYLPDLSSDNRQRREAAERMALNAPIQ 828

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM+ V  +L +  LA++MLLQ+HDE+V EV   E     +++   M  A  
Sbjct: 829 GTAADIVKIAMLKVDGALRETDLASRMLLQVHDEIVLEVAPGERPAVEELVRREMADA-- 886

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             + LRVPL V++ V  NW+
Sbjct: 887 --VRLRVPLGVSVGVGPNWE 904


>gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
 gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
          Length = 875

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/988 (32%), Positives = 495/988 (50%), Gaps = 127/988 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML ++L+  +     + 
Sbjct: 1   MTKE-KLLLLDGNSLAYRAFFALPLLTNDS-GIHTNAVYGFTTMLQRILEEEQ----PTK 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E + +YK  R K P  L  Q P +R    A+GI   E + +EADDI
Sbjct: 55  ILVAFDAGKTTFRHETFTEYKGGRQKTPPELSEQFPYLRKLIDAYGIKRYEQELYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A  +   V I+S D+DL QL +    +Y T K     EK     + +K+G+ P
Sbjct: 115 IGTLAKEASSQDMDVIIVSGDRDLTQLATEQVTVYITKKGITEIEKNTPAFIAEKYGLTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DNIPG+PG+G KTA  LL+E+G++E                 + E 
Sbjct: 175 LQIIDMKGLMGDSSDNIPGVPGVGEKTAVKLLKEHGSVEA----------------LYEA 218

Query: 237 AETARLSR---KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            +T + S+   KLV       ++  L  +  +      L                     
Sbjct: 219 MDTLKASKMKEKLVANEEQAIMSKKLATIYTDAPITISLADL------------------ 260

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                           E++ I +  E+   + +  S F+                     
Sbjct: 261 ----------AYNGPKEDELINVWRELGFKSLLDKSDFT--------------------- 289

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            +Q+  Q P + D   ++                   +  +  +       + + IA+S 
Sbjct: 290 -VQEKEQAPFDYDLVQEVRPEDLQD----------VMAVHVELENEHYHTCQQLGIALSD 338

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                     ++T +I        D+             L+++ E+   +K   + K  +
Sbjct: 339 G---------IKTQYIPFDNAAKSDT-------------LRRWLEDATKIKYMSDSKAAQ 376

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSI 528
             L R GI + G + D++L SY+ +   S  DIA++A++   Y          K  K +I
Sbjct: 377 ASLKRAGIQLAGVDFDLLLASYINNPALSGDDIATLARELGYYDVQADEAVYGKGAKRAI 436

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P       Q+ +H    +  +  L   L   L   +   +Y+ L+ P+  ++ +ME  GI
Sbjct: 437 P----DLDQLAQHVSRKAFAVWSLQPKLEALLKDNEQFDLYKNLELPLAGILGEMESEGI 492

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +++  L+++  E++  L+ +E+ IY  +GE FN++SPKQLG ILF KL  P   KTKTG
Sbjct: 493 TVNRATLEKMGQELNDKLVVIEQEIYAEAGETFNINSPKQLGVILFDKLGLPVIKKTKTG 552

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +    ++ II++IL +RQL K++STY + L   I++   +VHT +  A T
Sbjct: 553 Y--STAADVLEKLQSEHAIIEHILLYRQLGKLQSTYIEGLLKEIHESNSKVHTRFQQALT 610

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S +PNLQNIPI+ + G+KIR+AF+       L SADYSQIELR+LAH+++   L
Sbjct: 611 ATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKEDWILFSADYSQIELRVLAHMSEDQNL 670

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F   +D+H   A ++F V+ ++V   MRR AK +NF I+YGIS + L+  L I R E
Sbjct: 671 VEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVYGISDYGLSQNLDITRKE 730

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA++I++YF  FPG+ +Y++      + NGYV TI  RR +  +I S   ++R+  ER A
Sbjct: 731 AANFIEKYFASFPGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITSSNFNLRSFAERTA 790

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N PIQGSAADI ++AMI +   L+  K+  K+LLQ+HDEL+FE P+EEI    +I+   
Sbjct: 791 MNTPIQGSAADIIKKAMIDMDARLKKEKMQAKLLLQVHDELIFEAPKEEIALLEKIVPEV 850

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ME A    I L VPLKV+    + W E 
Sbjct: 851 MENA----IELAVPLKVDFNHGSTWYEA 874


>gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
 gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
          Length = 976

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1021 (29%), Positives = 506/1021 (49%), Gaps = 102/1021 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            K+  L LVDG S  +R+FYA            +G P +   GF   L    +N   +  
Sbjct: 8   SKKPILLLVDGHSLAFRSFYAFSKGIDGGLTTKEGFPTSVTYGFLKSLLDNCKNISPQG- 66

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFE 116
                + FD    TFR+E+ P+YKANR   P++    +  + +  +    +P  +  G+E
Sbjct: 67  ---VGITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYE 123

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----------EKIDIE 166
           ADD++ T    A  +G+ V I+S D+DL QLV     +Y                 ++  
Sbjct: 124 ADDLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNEN 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I     +I++
Sbjct: 184 GVKEKLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKIQK 243

Query: 227 ---KKRR--------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
              KK +        E +      A LSR L  + T+VP+ +      L++ N   L   
Sbjct: 244 NNDKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSES 302

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           LK LE + L+ ++                                  D    T       
Sbjct: 303 LKKLELSTLLRQI----------------------------------DIFNSTFSKGGFD 328

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL-ETIGSASFKI 394
                   E+ P+      L+  S+  I   + T + + + + + +Q+L +T    S   
Sbjct: 329 KNNVAKEEEKAPKVTGNNELEN-SENKIPKINVTVVNDFELLDKLIQRLDKTNQIVSLDT 387

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T++++   ++ + I +   ++ DD        +I L   T +++       + + S L+
Sbjct: 388 ETNSLNPIDAELVGIGLCLGEENDDL------FYIPLGHQTKKETP-NQLSIEYVFSKLR 440

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL 513
            + E+    K   N K+D+ +   +G+ ++G   D +L  Y+L+  +  H ++ I+ +  
Sbjct: 441 NWIEDPKKEKALQNSKFDRQIFFNHGLILKGVTFDTLLADYLLN-NQEKHGLSEISFRLF 499

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYER 571
            +      ++   +     +   +   +   +  +  ++  + + +     ++L+ ++E 
Sbjct: 500 GFKPPSFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKERFSKEKDELIKLFEE 559

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+L+ E FNLSSPKQLG+
Sbjct: 560 IELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEENFNLSSPKQLGE 619

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL        KT    +T   + +    ++ II+++++ R LSK+ STY D+LPN 
Sbjct: 620 ILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLSKLLSTYIDALPNL 679

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SADYS
Sbjct: 680 INEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNCKLLSADYS 739

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH+A    L   F  + DIH + A  IF    E++S   RR  KTINF +IYG
Sbjct: 740 QIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFGVIYG 797

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-- 869
           +   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+  +  
Sbjct: 798 MGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKF 857

Query: 870 ----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                           D  ++ ++ +   + RAA NAPIQGS+ADI + AM+ ++K   +
Sbjct: 858 DKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIE 917

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +  KMLLQ+HDEL+FEV ++ +   ++++  +ME      + L VPL V+I + +NW 
Sbjct: 918 MNVPAKMLLQVHDELLFEVEQDSLEITTKLVKKTMEDC----VKLNVPLLVDIGIGDNWM 973

Query: 974 E 974
           E
Sbjct: 974 E 974


>gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1]
 gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1]
          Length = 887

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/986 (32%), Positives = 504/986 (51%), Gaps = 116/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y DYK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYGDYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKDYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    E+ GF  TI++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFATKGEENGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+ GIG KTA+ L+Q+Y  +EN+  +   +K  KR+E     
Sbjct: 179 TEFIDMKALMGDSSDNYPGVEGIGPKTASNLIQKYHTVENLYDHIDDLKASKRKE----- 233

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                   +L+  + +  +   L  +                            T D D 
Sbjct: 234 --------RLIRDKHNAILGKKLATIDRHSP----------------------VTIDIDD 263

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +P              I+ E  R    K +    L++  +    +   +   +E   
Sbjct: 264 VKRQP--------------IDYEKLRQFYEKMNFRKFLAELNASGQGQDATEVEKVE--- 306

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         +++ +++++   K        F +     +   +  +  A+   DQ
Sbjct: 307 ------------YTVLDDQNVKEI--KANADDQIEFYLAMLGANYHLAPFVGFALKINDQ 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                           ++ S+D              L+   E+E   K   ++K   + L
Sbjct: 353 ----------------IYVSRDVELLQETN------LRHLLEDEQIKKNVFDLKRTMVGL 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR GI + G + D++L SY++++  +S+D+  IA  +  Y+ K   EI    KS  +P D
Sbjct: 391 HRLGIHVHGQDYDMLLASYLINNENNSNDLGEIAHLYGDYSVKTDIEIYGKGKSEHVPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++  H     N I  L   L  KL   +   +++ ++ P   V+++MEI G++++
Sbjct: 451 ---DEELFNHLASKVNAIENLKQPLLEKLKEHEQDDLFDTIEIPTARVLARMEINGMKVE 507

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L ++  E +  L  LE+ IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 508 ASTLLELQNEFAVRLKELEDKIYQQAGERFNLNSPKQLGHILFEKLNLPVIKKTKTGY-- 565

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYLQTLTATG 624

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 625 RLSSVDPNLQNIPTRTEEGKQIRKAFVPTEPDGYIFSCDYSQVELRVLAHVSGDQNMQEA 684

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A  IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 685 FKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQ 744

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I EY++K     R+ GY ETI  RR +  +I++ K ++R+  ER AIN
Sbjct: 745 EFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTAIN 804

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 805 SPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQ 864

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 865 SA----VKLDVPLIADSGWGHNWYDA 886


>gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 876

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/978 (30%), Positives = 480/978 (49%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  +                   
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEH------------------- 217

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                   L++ +G +L   L+  +   L+++   T + D + I
Sbjct: 218 ------------------------LDEISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNIDFTSL----------------KEAAIHFELDGGNYLRNNILKFSLFTGEK--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYVE-----LVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            I ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 EIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX]
 gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX]
          Length = 929

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/983 (29%), Positives = 472/983 (48%), Gaps = 98/983 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L LVDG S  +RAFYA P        G   NAI GF +ML KLL+  +     +H A
Sbjct: 32  RPRLLLVDGHSMAFRAFYALPAEKFVNSAGQATNAIYGFTSMLVKLLREEQ----PTHIA 87

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D    TFR+E Y +YKA R + P     Q+ L++      G+ ++ + G+EADDIIA
Sbjct: 88  VAWDRSEPTFRHEEYAEYKAGRSETPPEFPSQVGLLQELLGLIGVTSLSVPGYEADDIIA 147

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T T     EG  V I S D+D  QLV     +    +      ++  E V  K+ +PPE+
Sbjct: 148 TLTTRGLAEGMDVLIASGDRDTFQLVGEHCTVLYPGRSLSDLIRMTPEAVEAKYAVPPER 207

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G+  DN+PG+PG+G KTAA  L +YG+L+ ++ +A  I   K  +N+ ++ +
Sbjct: 208 YCDLAALVGEKSDNLPGVPGVGPKTAAKWLAKYGSLDALVAHAHEI-GGKAGQNLRDHLD 266

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               +++L  L TDV + + +  + L   N   +      LEF                 
Sbjct: 267 DVLRNQRLNRLATDVELGVDVTGMTLGHWNRDGVNLLFDNLEF----------------- 309

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                    +T++   F+ LS+Q    ++E    + F   L   
Sbjct: 310 ------------------------ASTLRDRLFAVLSEQAGDDSAEPVQDEGFSVELVDP 345

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +   + +              W+  ++         +            I +A++    +
Sbjct: 346 APGTLGD--------------WLAAEIAAGARTGVALEWSG--ERDGDIIRLALAVPSGR 389

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                  +    D                    + L  +  +  + K+ H +K+    L 
Sbjct: 390 AVCLDPTQLDPAD-------------------EAALTAWLADPAYPKVLHGVKWALRALW 430

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-ILKSRKSSIPIDKISD 535
             G ++ G E D  + +Y+L+ GR + ++A++  ++L     E   +  + ++ ++   D
Sbjct: 431 ARGWTLDGVESDTAIAAYLLEPGRRNFELATLCLRYLGRELTEHNAEGAQLTLDLEGTGD 490

Query: 536 SQ--VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            Q   +      +   ++L L L  +L   + L +   L+ P+ +V+++ME  GI  D  
Sbjct: 491 DQDTARRELALRALATVELALALDAELTRREGLDLLHNLELPLAEVLARMEDAGIAADLT 550

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+ + AE +  +    +  + L G +FNL SPKQL  ILF +L  P   + KTG     
Sbjct: 551 YLRDLEAEFAAAVRQAVDEAHRLVGREFNLGSPKQLQQILFDELGLPKTKRIKTGYTTDA 610

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                     DN +   +L  R  +K+++T  + L   I +   R+HT +    T TGRL
Sbjct: 611 DALAWLAAQTDNELPVILLRHRDQTKLRTT-VEGLIKTIAEDG-RIHTTFHQTVTATGRL 668

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIP++TD G++IRRAF+      +L++ADYSQIELRI+AH+++   L + F 
Sbjct: 669 SSAEPNLQNIPVRTDAGRRIRRAFVVGEGYEQLLTADYSQIELRIMAHLSEDEALIEAFH 728

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D H  +A+ +F + +++V  + R   K +N+ + YG+S + LA QL I   EA   +
Sbjct: 729 SGFDFHAQIASRVFRIPVDQVDGEARARIKAMNYGLAYGLSDYGLAQQLGISPKEARVLM 788

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF  F  + +Y+E      R+ GY  TI GRR +  ++NS     R + ER A+NAPI
Sbjct: 789 EEYFSHFGKVRDYLEAVVVRARREGYTATILGRRRYLPDLNSDNRQRREMAERMALNAPI 848

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM+ V ++L ++ LA++MLLQ+HDELV EV   E+ T  +++V  M +A 
Sbjct: 849 QGSAADIIKLAMLRVDRALRENGLASRMLLQVHDELVLEVAPGELDTVRELVVEHMSQAQ 908

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
                LRVPL V++ V  NW + 
Sbjct: 909 ----QLRVPLAVSVGVGPNWHDA 927


>gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 727

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/734 (72%), Positives = 612/734 (83%), Gaps = 19/734 (2%)

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
            LRTDVPITIPL+HLILEDCNGP+LI+FLKALEFT+L  RVA   +CDA NIE   LD  
Sbjct: 2   KLRTDVPITIPLDHLILEDCNGPQLITFLKALEFTRLTKRVAAFCNCDAENIESADLDSK 61

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
                   I+ E  +  + K +Q ++LS+    I S+ +PQ  FLER + L+Q  I N S
Sbjct: 62  --------IDIETSQPKSPKENQSATLSEN---IISKNSPQHFFLERTKLLTQSQIKNHS 110

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y +I N KD+++W+Q LE  GSASF IITDT+DAF+SKPI IA S L+Q+D +  K+ETI
Sbjct: 111 YIRIRNIKDLKKWLQILENTGSASFTIITDTVDAFNSKPIGIAFSILNQEDASLLKIETI 170

Query: 428 FIDLSVH-----TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            IDL +          S  K+  T+EILSYLKK FENEH LKIGHNIKYDKLVL RYGI 
Sbjct: 171 VIDLPLIIDSSLEENMSPEKSISTEEILSYLKKIFENEHLLKIGHNIKYDKLVLQRYGII 230

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
           +RGFEDIMLMSYVLDSGR SHDIA+IA+KWL Y    RKE+LK+ K SI ID+IS+S++Q
Sbjct: 231 IRGFEDIMLMSYVLDSGRYSHDIANIAKKWLFYDLITRKEMLKTGKRSISIDQISNSRIQ 290

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E+ +E SNVILQLWLLLR KLI EKLLHVYERLDKPMID+V+QME TGIQID+ LL QVS
Sbjct: 291 EYVVEKSNVILQLWLLLRAKLIAEKLLHVYERLDKPMIDIVAQMETTGIQIDRQLLAQVS 350

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           +EISK+LL LEE I++L+GEKFN+SSPKQLGDILFTKLKFP G KTK GQWKTTAQDLEQ
Sbjct: 351 SEISKDLLCLEEKIHNLAGEKFNISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQDLEQ 410

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           INC DN +I++ILEWR+ SKIKSTYADSLPNHIN+RTQRVHTFYSLASTMTGRLASLEPN
Sbjct: 411 INCQDNILIEHILEWRRFSKIKSTYADSLPNHINQRTQRVHTFYSLASTMTGRLASLEPN 470

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP+KT+LG+KIRRAFI+PPTKKLISADYSQIELRILAH+A+I PLYQ F+NSLDIH 
Sbjct: 471 LQNIPVKTNLGKKIRRAFIAPPTKKLISADYSQIELRILAHVAQINPLYQAFKNSLDIHT 530

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           +VA+EIFGV IE+VS  MR+HAKTINFSIIYGISPFRLA QL+I RSEA DYI+RYF RF
Sbjct: 531 LVASEIFGVKIEEVSSHMRQHAKTINFSIIYGISPFRLANQLKIKRSEATDYIQRYFDRF 590

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGIHEYIEKTKNF R+N YVETIFGRRI+YDEINSPK SIRN+NERAAINAPIQGSAADI
Sbjct: 591 PGIHEYIEKTKNFARKNSYVETIFGRRIYYDEINSPKVSIRNLNERAAINAPIQGSAADI 650

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
           TRRAMI VHKS+E HKL+TKMLLQIHDELVFE PEEEI   + II  SME ACLPKINLR
Sbjct: 651 TRRAMILVHKSIECHKLSTKMLLQIHDELVFEAPEEEIEQVTNIITESMENACLPKINLR 710

Query: 960 VPLKVNIKVSNNWQ 973
           VPLKV+IKVS+NW+
Sbjct: 711 VPLKVDIKVSDNWE 724


>gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/989 (32%), Positives = 481/989 (48%), Gaps = 104/989 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L L+D SS IYRA+YA P      DGL  NAI GF  M  K+L   + E     
Sbjct: 1   MPTPERLILIDASSLIYRAYYAIPANFSTADGLHTNAIYGFATMFRKILSGRQPERG--- 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD P  TFR E YP+YKA RP++   L  QLP V    +A   P + + G+EADDI
Sbjct: 58  -AVVFDAPGKTFREEQYPEYKAQRPRMDPELREQLPWVDKLVEAHRFPHLRVPGYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T T  A   G  V IIS DKD  QL+ PT  + DT+++   D E V KKWG+PP   +
Sbjct: 117 IGTLTRQAVDAGMEVYIISGDKDFAQLIGPTVRMIDTLRDVTFDAELVRKKWGVPPSLFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD +DNIPG+PGIG KTA  LL  YG+LE +L + S +   K ++         
Sbjct: 177 DYLALVGDKVDNIPGVPGIGPKTAKKLLDAYGDLEGVLTHTSEL---KGKQK-------- 225

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                               + LE      R++       A I+
Sbjct: 226 ------------------------------------ERLEDNAEQARMSQKL----ATID 245

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             V      E+  +      + +   K  +F SL  +      E   Q            
Sbjct: 246 TQVELELGLEDLKLVPVAAAELNALYKRLEFYSLLSEEEVAKGEAKAQVGA--------- 296

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI--ITDTMDAFHSKPIAIAISTLDQKD 418
                  +  + + + +   +  L      +     I D   A   +   +A+S      
Sbjct: 297 ------DFGAVTSLEQLDALLASLPGPEDGAVATMAIVDAPSAVRGELAGLALSVGAGHG 350

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    FI L         G        L+ L+ + E+    K+GH+ K   + L R
Sbjct: 351 --------RFIPLHCEGGLGEAG--------LAKLRPWLEDPKRYKLGHDCKASWVALRR 394

Query: 479 YGISMRGFE-DIMLMSYVLDSGRS-SHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533
            G+++ G   D M+ S++++  +   H +  + +++L      +K IL S K      ++
Sbjct: 395 KGVALAGIVGDTMIESFLVEPNKLIPHRLDQLTKEYLQRTIPPQKRILGSGKRLKRFSQL 454

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +          +   ++ +R +L  E      E++  P+  V+ QME+ G+ ID +
Sbjct: 455 DAEALAPWCCTQVEAVAAAFVEIRERLDAEGHRDTLEQVSLPLSWVLGQMELDGVAIDSE 514

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++S E  + L  LE+ I++++G +FN++S KQLG +LF +L+ P   +TKTG + T 
Sbjct: 515 DLGKMSEEFGERLAKLEKTIFEIAGREFNIASSKQLGAVLFDELELPVIKRTKTG-YSTN 573

Query: 654 AQDLEQIN----CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           A+ LE++        + I K +LE R+L+K+ +TY D L   +N  + R+H  +   + +
Sbjct: 574 AEVLERLAGKTKHPKHTIAKYLLEHRKLAKLINTYTDVLQAAVNPDSGRIHATFQQTAGV 633

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           +GRL + EP+LQ  PIKT  G+++R+AF++ P  KLISAD+SQIELR+LAH +    L +
Sbjct: 634 SGRLITTEPDLQRTPIKTPEGKRVRQAFVTRPGYKLISADWSQIELRLLAHFSSDAHLVE 693

Query: 770 VFENSLDIHRMVAAEIF--GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            F   LD+H   AA++F  G   EKVS + R   K +NF+ IYG     L   L++PR +
Sbjct: 694 AFAKGLDVHARTAAQLFEVGGGPEKVSREQRGVGKLVNFATIYGQGATALGQILKVPRKQ 753

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  YI  YF  + G+ ++++ T      +G+VET+ GRR +  E++S     R   ER A
Sbjct: 754 AQAYIDGYFAYYSGVRDWLDGTMAQANVDGFVETLLGRRRYIPELSSNNWQDRQAGERIA 813

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
            N PIQGSAADI + AM+ + + L   KL T+MLLQIHDELVFE P  E+     I+   
Sbjct: 814 ANTPIQGSAADICKLAMLGIDRQLRAQKLTTRMLLQIHDELVFEAPVAEVEAVVAIVRGQ 873

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME      + LRVPL V++ V + W E +
Sbjct: 874 MESV----VELRVPLVVDVGVGDTWAEAH 898


>gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of
           Bemisia tabaci]
          Length = 939

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/981 (32%), Positives = 501/981 (51%), Gaps = 69/981 (7%)

Query: 5   NHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+DG S IYRA +A     +    GL   AI GF N L  LL+  +     +H  V
Sbjct: 6   PKLFLLDGMSLIYRAHFALGKAATTTAQGLKTGAILGFVNTLVALLEKEK----PTHLIV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+ ++P YK++RP  PE +   +P ++   + FGI AI   G+EADD++ T
Sbjct: 62  AFDGKEKTFRHALFPAYKSHRPVQPEEISIAIPYIKSILEGFGILAITYSGYEADDLLGT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGI-PPEK 178
               A   G    I+STDKDL Q+V     LY       K   +  + ++ +W I  PE+
Sbjct: 122 LAKKAAVMGCRTYIMSTDKDLAQIVGDNIYLYKPSSYGEKSTILGEKEILAQWEIARPEQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  + AL GD  D IPGIP IG KTA  L++E+ NLENIL ++  +   K + N+++YA+
Sbjct: 182 VRDILALEGDPSDFIPGIPSIGKKTARKLIKEFDNLENILAHSHMLTG-KLKANLIQYAD 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              LS++L  +RT+VPIT+ LE    +  N  +L      LEF +L  R+    + + A 
Sbjct: 241 QGILSKELATIRTNVPITLDLEKCHYQGPNKVKLEPIFSLLEFKQLKQRLFGKPNPEKAT 300

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +PV L        GI    +   +                            L+R    
Sbjct: 301 NQPVGL------FDGINPMAKSQENNHSNG---------------------HGLDRQPHT 333

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           ++     D+Y  I      ++ ++KLE+    +F I T  MD   +  + IA +      
Sbjct: 334 TEGQHEQDAYALIETLPACEKLLEKLESATKWAFDIATTGMDPHLADLLGIAFAYQPG-- 391

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +I L  + +          +  L+ L+  F+    LK+GHN+K   +V+ R
Sbjct: 392 ------TAYYIALPPNKA--------AAQPFLALLQPLFQRTDVLKVGHNLKNALIVMQR 437

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           +G+S+     D M+   ++ +    H + ++++++L++       S        +     
Sbjct: 438 HGLSIAPPLFDTMIAHGLVAADMDHH-LTTLSEQYLNHR------SYLKPPNRAEKESEG 490

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           ++ +A E ++++L ++  +   L   K+  ++ R++ P++ V+  ME+ G+ ID   L  
Sbjct: 491 IKNYAGEGADLVLHIYPKIAQALREHKVATLFYRVEMPLVQVLVAMELAGVSIDLPFLAT 550

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + +E+     +L+E IY L+   FN+ SPKQLG +LF KL   +      G    T + +
Sbjct: 551 LGSEMEPTTKALKEKIYTLAQTTFNIDSPKQLGVVLFEKLALHTKPMKTKGGQYATGEAI 610

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                  +PI+  I+E+R   K++STY D+LP  ++   QR+H  Y      TGRL++  
Sbjct: 611 LAKLSKVHPIVPLIMEYRTWQKLRSTYVDALPTLLHPIDQRLHATYHQTVVTTGRLSATG 670

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQ IPI+T  G+ +R+AFI       L SADYSQIELRI+A  A+ T +   F++  D
Sbjct: 671 PNLQQIPIRTPTGRALRKAFIPHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSDQD 730

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKRY 835
           IH++ A ++F   I  V  +MR+ AK  NF IIYGISPF L+ ++  + R EAA+ I+ Y
Sbjct: 731 IHQITAQKLFKTVI--VDQEMRQKAKIANFGIIYGISPFGLSERMEHLSRKEAAELIEAY 788

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  FPGI  YI+ +      NGYV T+ GR+    ++ +   + R +  R AIN PIQGS
Sbjct: 789 FEAFPGIKTYIDDSIAHAEANGYVRTLLGRKRFLPDLYASNPTTRGVARRNAINTPIQGS 848

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AA++ + AMI +   LE HKL+TK+++Q+HDELVF VP  EI      I   M  A   +
Sbjct: 849 AAEMIKLAMIHIQDWLEKHKLSTKLIIQVHDELVFNVPRSEIADIQHHIPLLMATALPLE 908

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
               VP+KVN  +  NW E +
Sbjct: 909 ---NVPIKVNWNIGANWLEAH 926


>gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
 gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
          Length = 905

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/977 (31%), Positives = 490/977 (50%), Gaps = 84/977 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFYA P L+   +GLP NA+ GF  ML ++    +KE     + V F
Sbjct: 3   RLVIMDGNSLLNRAFYALPPLT-SAEGLPTNAVHGFLAMLLRI----QKEKKPDCWVVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T R E+Y  YKA R + PE L PQ   ++    A  +P +E +G+EADD+IAT T
Sbjct: 58  DKTKATKRIEMYDQYKAQRKETPETLKPQFAYLKEILGAMSVPVLESEGYEADDLIATVT 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE EG  + +I+ DKD  QLVS  T +  T+K     E  + + + +K+ + PE+++ 
Sbjct: 118 RRAEAEGMEIIVITGDKDAFQLVSDQTTVEMTIKGISTVECYNKDKLFEKYQLKPEQIID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPGIPGIG KTA  LL  +G+LE +L N   +   K +  + EY E A 
Sbjct: 178 LKGLMGDPSDNIPGIPGIGEKTALKLLWSFGSLEQVLENVDAVPGNKLKALLKEYPEQAL 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+KL  +   VPI   +   +    +  + +  L     + +      T D D      
Sbjct: 238 LSKKLATMIDQVPIDFQIGDFVRTKPDSEKTLGLLHQYSLSMICRLFEQTLDQDQEGPAR 297

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                 + + +          +   + SQ     +Q    +S+  P              
Sbjct: 298 SRGPAKSQDRRDNENGKNNRNNKNNQDSQ----DNQEDNRDSQAGPSYE----------- 342

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                   +I++      W++++ +                  + + I+     +    S
Sbjct: 343 -------ERILDPG---GWLEQISSWM-----TEKT-------ELV-ISYRLEGEAAHLS 379

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
              E    D     +  S  +  + K +L+   +   +    KI  + K     L   G+
Sbjct: 380 VWNEMGICD---QRNTYSLDRTQIDKNVLAKWHELLGSPRVFKIMADHKTLYSALANEGV 436

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D+ L +Y+++  RSS            Y   E+L  +   +            
Sbjct: 437 RLDGLKYDLSLAAYLMNPTRSS------------YQAAELLSGQADELFFS--------- 475

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            A   + ++   +   R KL    L  +   L++P+  V+++ME  GI +D+++L+Q+  
Sbjct: 476 -AAREAGLLAHEFENSRKKLEELGLSSLLHELEEPLSIVLAEMERQGISVDREMLEQIGF 534

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+ K +  +EE+IY ++G  FN++SP+QLG +LF +L+ P   K KTG   +T  +  + 
Sbjct: 535 ELEKKIAVIEEDIYQIAGVSFNINSPQQLGKVLFEQLELPPLKKIKTGY--STDAETLEE 592

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
             G + I++ ILE+R L K+ STY   L   +  R  +VHT +    T TGRL+S EPNL
Sbjct: 593 LAGQHCIVEKILEFRHLVKLNSTYVKGLLGQL--RDGKVHTTFQQMVTATGRLSSTEPNL 650

Query: 721 QNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIPI+ + G+K+R+ F+      +L SADYSQIELR+LAH ++   L Q F+   D+H 
Sbjct: 651 QNIPIRMEEGRKLRKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTGEDVHA 710

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+FGV +E+V+P MRR AK +NF ++YG++ F LA  +RIPR EA  YI+RYF R+
Sbjct: 711 RTASEVFGVPLEQVTPDMRRKAKAVNFGLMYGLTDFGLARDIRIPRKEAKFYIERYFQRY 770

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ +Y+  +     + G   T+  R     E+N    ++R   +R A+N+PIQG+AADI
Sbjct: 771 SGVKKYLNDSVVNAMETGETRTLLNRLRQTPELNHQNRTVRQFGQRIAMNSPIQGTAADI 830

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V ++++   L   +LLQ+HDEL+ EV    +   +QI+   ME A L    L 
Sbjct: 831 MKLAMIRVDEAMK--GLEANLLLQVHDELLLEVSARALPEVAQIVKTEMESALL----LT 884

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL+V+ K   NW +  
Sbjct: 885 VPLQVDCKTGVNWCDMG 901


>gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
 gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
          Length = 931

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/990 (31%), Positives = 501/990 (50%), Gaps = 107/990 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   L L+DG+S  +RAFYA          H+GL  NA+ GF N+L  ++     +  
Sbjct: 33  MAK-PTLLLIDGNSLAFRAFYALINQVDRFVNHEGLHTNALVGFNNLLDGIIDPFNPDL- 90

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V +D    TFR   + +YK NR   P+ L+ Q   +R   +  GI + E+ GFEA
Sbjct: 91  ---ALVAWDAGKTTFRTGKFDNYKGNRDNTPQELVEQFEPLRKMVELHGIKSYELPGFEA 147

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T   + E+ G++VTI++ D+D+ QLVS    ++ T K     +      + + + 
Sbjct: 148 DDIIGTMARLGEENGYSVTIVTGDRDMTQLVSDDITVWVTKKGISEIDHYTPAMIAELYD 207

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P+++V ++ L GD+ DN PG+ GIG KTA  L+++Y ++  +      +K  K++E 
Sbjct: 208 GLEPKQIVDIKGLQGDTSDNYPGVAGIGPKTALKLIKQYHSIPEMYEQIDEMKASKQKEK 267

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   + A LSR L  + TD P+TI L  L                              
Sbjct: 268 LVNGKQDAMLSRDLAKILTDAPVTISLSDLNYH--------------------------- 300

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                + E ++      + K   ++      T   +                        
Sbjct: 301 ---GPDYENIIPFYQHLDFKAQLVKLANQGYTVPTSG----------------------- 334

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
               K +++ INN +      T      V +L+   + SF +  D  +   + PI   I 
Sbjct: 335 --HTKDAEFDINNTTLDVSAITPASLAHVSQLKD--TVSFYLELDNENYHIANPIGFVIG 390

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                   S  ++ +  +  V                    K+  E+   LK   N K  
Sbjct: 391 NQADGYFASRDIDLLTQNSPV--------------------KRILEDSTILKNVFNAKEL 430

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSS 527
            + L R GI+++G   D++L+SY+LD+  +++D+ ++A     Y      +   K  K +
Sbjct: 431 YVSLKRLGIALKGVSFDLLLVSYLLDTNDNNNDLGALAHDNDYYAVMTDEEVYGKGAKFA 490

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP    +D+   EH    +  I  L   L  +L+  +   +YE ++ P+  +++ ME TG
Sbjct: 491 IPA---ADADFFEHLGRKAMAINLLREPLLDRLLSHEQTKLYEDIELPLTKILADMESTG 547

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I +D + L Q+ +++++ L  LE+ IY  +G +FN+ SPKQLG +LF ++K+    KTKT
Sbjct: 548 ITVDSEQLLQMRSKLTERLSELEQKIYQQAGHEFNIQSPKQLGVVLFEEMKYTPIKKTKT 607

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G + T+ + LE++  GD PI+++IL +RQ++KI+STY + L   I+    +VHT Y    
Sbjct: 608 G-YSTSVEVLEKM--GDVPIVESILAYRQVAKIQSTYVEGLLRVIHGSDSKVHTRYLQTL 664

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++ + G++IR+AF+      +++SADYSQIELR+LAHI     
Sbjct: 665 TQTGRLSSVDPNLQNIPVRIEEGRQIRKAFVPSHSDWQILSADYSQIELRVLAHITGDKN 724

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F N  DIH   A  IFG+  ++ V   +RR AK +NF I+YGIS F L+  + + R
Sbjct: 725 LQAAFINGEDIHAATARRIFGIKDDEPVEGNVRRQAKAVNFGIVYGISDFGLSKNIGVSR 784

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA   I+ YF ++P + ++ +      R+ GYVETI  RR +  +I + + + R+  ER
Sbjct: 785 KEAKAIIETYFDQYPDVKKWSDDIIASARETGYVETIAHRRRYLPDIKAKRFNARSFAER 844

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AMI V  ++E   +   MLLQ+HDEL+FE P  E+    +++ 
Sbjct: 845 TAMNSPIQGSAADIIKIAMIKVQAAIEQAGMQAHMLLQVHDELIFEAPASEMADLEKLVT 904

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             M+ A    + L VPL V+  V  +W + 
Sbjct: 905 KVMDSA----VKLDVPLLVSSHVGASWYDA 930


>gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916]
 gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916]
          Length = 1007

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1031 (29%), Positives = 479/1031 (46%), Gaps = 86/1031 (8%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            Q +  L LVDG S  +R+FYA            DG+P +   GF   L     ++ K   
Sbjct: 5    QDKPLLLLVDGHSLAFRSFYAFSKGGEGGLATKDGVPTSVTYGFLKALL----DNCKSLT 60

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFE 116
                A+ FD    TFR++  P+YKA+R   PE+    L  ++   +    +P     GFE
Sbjct: 61   PQGVAIAFDTAEPTFRHKADPNYKAHRDTAPEVFFQDLNQLQEILRQQLQLPLCMAPGFE 120

Query: 117  ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----------KIDIE 166
            ADD++ T    A   G+ V I+S D+DL QLV  +  +                  I+ E
Sbjct: 121  ADDVLGTLANRAANAGWRVRILSGDRDLFQLVDDSRDIAVMYMGGGPYARSSGPMLINEE 180

Query: 167  HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
             V+ K G+ P  +V L+ALTGDS DNIPG+ G+G KTA  LL+E G+L+ +    + ++ 
Sbjct: 181  GVVAKLGVVPTSVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENGDLDAVYRVLAEVEA 240

Query: 227  -----------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
                          +  +    + A LSR+L  +  D+P+      L L   +G  L   
Sbjct: 241  EGPKASRGAIKGALKGKLSNDRDNAYLSRQLAEILVDIPLPEEP-ALELGPVDGEGLQQQ 299

Query: 276  LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
            L+ LE   L+ +V       +         +  +     +        +T    Q ++  
Sbjct: 300  LEMLELNSLVRQVPAFVATFSTGGLAANRHLVESAKTSSSKTKASASSSTSDPDQAAAND 359

Query: 336  DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI----GSAS 391
              TS  +S   P                 +     I     +   V++L          +
Sbjct: 360  PSTSPESSASLP-----------------DLQPELITTPAQLTGLVERLMACRDPLAPVA 402

Query: 392  FKIITDTMDAFHSKPIAIAIST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
                T  ++ F ++ + + +    D KD     V  +              +      +L
Sbjct: 403  VDTETSDLNPFKAQLVGVGVCWGADLKDLAYIPVGHMAPAAPDGEDAAGEPEQLALDAVL 462

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
              L  +  +    K   N KYD+L+L R+G+++ G   D +L  Y+ D+    H +  +A
Sbjct: 463  QALAPWLASSDHPKALQNAKYDRLILLRHGLTLGGVVMDTLLADYLRDAAA-KHGLDLMA 521

Query: 510  QKWLSYT---RKEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-- 562
            Q+    T     +++   K   +     +   Q   +   + ++  +L L LR +L    
Sbjct: 522  QRDYGITPTLFTDLVGKAKDGKASSFAAVPVDQAALYCAMDVHLTRRLALDLRQQLTSMG 581

Query: 563  EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            E+L  + E+++ P+  V++ ME TGI+ID   L+++SAE+   L  LE    D+ G  FN
Sbjct: 582  EQLPALLEQVELPLEPVLALMEATGIRIDVPYLQELSAELGATLERLETEAQDVVGTSFN 641

Query: 623  LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
            L+SPKQLG++LF  L        +T    +T   + +   GD+P++  +LE R LSK+KS
Sbjct: 642  LASPKQLGELLFDTLGLNRKKSRRTKTGWSTDATVLEKLEGDHPVVPLLLEHRVLSKLKS 701

Query: 683  TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
            TY ++LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+    
Sbjct: 702  TYVEALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQEG 761

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             +L+SADYSQIELRIL H++    L Q + +  D+H + A  +  +  ++VS   RR  K
Sbjct: 762  WQLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDEVSADERRLGK 819

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            TINF +IYG+   R A +  + +  A D++ +Y  R+P +  ++E  +      GYVETI
Sbjct: 820  TINFGVIYGMGAQRFARETGVSQVVAKDFLAKYKQRYPKVFAFLELQERLALSRGYVETI 879

Query: 863  FGRRIHYDEIN------------------SPKSSIRNINERAAINAPIQGSAADITRRAM 904
             GRR  +                      + +  +     RAA NAPIQGS+ADI + AM
Sbjct: 880  LGRRRPFHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKLAM 939

Query: 905  ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
            + +  +L+   L  ++LLQ+HDELV EV    + T  Q++V +ME A      L VPL V
Sbjct: 940  VQLQTALQQQGLPAQLLLQVHDELVLEVEPAALDTVRQLVVQTMENAM----TLSVPLVV 995

Query: 965  NIKVSNNWQEE 975
                  NW E 
Sbjct: 996  ETGSGANWMEA 1006


>gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107]
 gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107]
          Length = 998

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1020 (28%), Positives = 477/1020 (46%), Gaps = 83/1020 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R+FYA            DG P +   GF   L    +  + +      A
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLATKDGRPTSVTYGFLKSLLDTGKTFKPQG----VA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT-QAFGIPAIEIQGFEADDII 121
           + FD    TFR++   +YKA+R   PE+    L  ++        +P     G+EADD++
Sbjct: 66  IAFDTAEPTFRHKADTNYKAHRDVAPEVFFQDLEQLQQILSDQMRLPLCIAPGYEADDVL 125

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKE---EKIDIEHVIKK 171
            T    A   G+ V I+S D+DL QLV  +  +           K      I  + V+ K
Sbjct: 126 GTLANRAADAGWGVRILSGDRDLFQLVDNSRDIAVLYMGGGPYAKGSGPTLIQEDGVVSK 185

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P+K+V L+ALTGDS DNIPG+ G+G KTA  LL++  +L+ +    + ++ +  + 
Sbjct: 186 LGVMPDKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNIDLDAVYATLAEVEAEGPKA 245

Query: 232 -----------NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
                       +    + A LSR L  +  D+P+    E L L+  +   L   L+ LE
Sbjct: 246 SRGAIKGALIGKLRSDRDNAYLSRMLAEILVDIPLPKDPE-LGLQQVDAEGLSDRLEDLE 304

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
              L+ +V                 + T    G       + + T K S   +  D  S 
Sbjct: 305 LNSLVRQVGGF--------------VATFSTGGYGANANSEAEKTPKRSPAKTKPDSASS 350

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA----SFKIIT 396
             S   PQ+  +E         I       I + + +Q  VQ+L          +    T
Sbjct: 351 TESAAAPQQGSVEA----EAGAIPCLQPQLIESNEALQALVQRLMDCTDPEAPIAIDTET 406

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
             ++ F ++ + + +   +  D  ++ +           ++ +  +    + +L  L  +
Sbjct: 407 TDLNPFKAELVGVGVCWGEANDALAY-IPIGHKP-PSELTEATPPQQLPLETVLMALSPW 464

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515
             +    K   N KYD+L+L R+G+++ G   D +L  Y+ D+    H +  ++++   +
Sbjct: 465 LASPQHPKALQNAKYDRLILLRHGLTLNGVVIDTLLADYLRDAAA-KHGLDVMSEREFGF 523

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLD 573
                            +       +   + +V  +L L LR  L     +LL + E ++
Sbjct: 524 RPTTYGDLVGKKQTFADVEIEPASLYCGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVE 583

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
           +P+  V++QME TGI+ID   LK +S E+   L  LE     ++   FNL+SPKQLG++L
Sbjct: 584 QPLEPVLAQMEATGIRIDVPYLKTLSDELGSTLNRLETEAKQVAEVDFNLASPKQLGELL 643

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F  L        +T    +T   + +    D+P++  +LE R LSK+KSTY D+LP  + 
Sbjct: 644 FDTLGLDRKKSRRTKTGFSTDATVLEKLEHDHPVVPLVLEHRVLSKLKSTYVDALPQLVE 703

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+      L+SADYSQI
Sbjct: 704 AETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWTLLSADYSQI 763

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELRIL H++    L + +    D+H + A  +  ++ ++VS   RR  KTINF +IYG+ 
Sbjct: 764 ELRILTHLSGEEVLQEAYRTGDDVHALTARLL--LDKDEVSADQRRLGKTINFGVIYGMG 821

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
             R A +  +  +EA +++ +Y  R+P +  ++E  +      GYVETI GRR  +    
Sbjct: 822 AQRFARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFHFDR 881

Query: 874 ------------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                             + +  +     RAA NAPIQGS+ADI + AM+ +   L    
Sbjct: 882 NGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQAMLLSQG 941

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +  ++LLQ+HDELV EV  + + T   ++V++ME A    I L VPL V   V  +W E 
Sbjct: 942 IPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENA----IKLSVPLVVETGVGRDWMEA 997


>gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 875

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/978 (30%), Positives = 464/978 (47%), Gaps = 112/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLL  K  G+  NA+ GF  +L K+++  +     +HF V 
Sbjct: 2   DKLILIDGNSLSFRAFYALPLLKNKA-GIHTNAVYGFARLLEKIIKEEQ----PTHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y DYK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHETYQDYKGGRQKTPPELSEQFPYIRQLIDAYQIQRYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A++ G    II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SREADQAGMQTIIITGDRDLTQLATDQVTIYYTKKGVTDVDHYTPQFIAEKYNGLKPSQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GDS DNIPG+ G+G KTA  LL ++G +E +  +   +  K            
Sbjct: 177 IDLKGLMGDSSDNIPGVAGVGEKTAMKLLNQFGTVEGVYDHIEEVSGK------------ 224

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++   T +CD+   
Sbjct: 225 -------------------------------KLKEKLENSHDDALMSKTLATINCDSP-- 251

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
               + ++  + +      E  +    K+ +F  L D         T  + F+       
Sbjct: 252 ----ITVSLEDTRLPQKMDESAKIELFKSLEFRQLLDGMDVEADNATASRDFVPTTNMSK 307

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                                      +  A+  +     +    + +   +   +Q   
Sbjct: 308 V----------------------DFTQLSEAAIHVEVAGPNYLKDELLKFGLYDGEQYVV 345

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             F     +                        L  + E+E   K  H+ K   + + R 
Sbjct: 346 IPFDKVNEYP----------------------ELVAWLEDETTQKWVHDAKKTYIAMKRS 383

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            I++     D ML SY++D  R+  D+ S+   +     ++ +             D  +
Sbjct: 384 DIAIENVVFDTMLASYIIDPSRTIEDVHSVMTHFDQTFVQDDVSVYGKGKSFHIPEDGVL 443

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +H     + I  +   +   L   +   +   ++ P+  ++S+ME  GI  D D LK++
Sbjct: 444 DKHIASILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDTLKEM 503

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
              I   L  L E I++ +GEKFN++SPKQLG ILF KL+ P   KTKTG   +TA D+ 
Sbjct: 504 ETVIQTELDQLIEQIHEQAGEKFNINSPKQLGVILFEKLELPVIKKTKTGY--STAVDVL 561

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +PII NIL +R LSK++STY + L   I     R+HT ++     TGRL+S++P
Sbjct: 562 EKLQNAHPIIDNILTYRTLSKLQSTYVEGLQKVIWDDG-RIHTRFNQTLAQTGRLSSVDP 620

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+ + G+KIR+AF S      +++ADYSQIELR+LAHI     L Q F ++ D+
Sbjct: 621 NLQNIPIRLEEGRKIRKAFKSTHEDYVILAADYSQIELRVLAHITGDPTLQQAFNDNEDV 680

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R EA  +I  Y +
Sbjct: 681 HTTTAMKVFNVAADEVTSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKEAQRFIDDYLN 740

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y++      +Q GYVET+  RR +  +I S   ++R   ER A+N+PIQGSAA
Sbjct: 741 HFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRGFAERTAMNSPIQGSAA 800

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+  H+ ++      ++LLQ+HDEL+FEVP++E+    + +   M  A    + 
Sbjct: 801 DIIKLAMVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHA----LQ 856

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPL V       W + 
Sbjct: 857 LDVPLSVESDYGKTWYDA 874


>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
 gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
          Length = 871

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/977 (32%), Positives = 506/977 (51%), Gaps = 123/977 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + ++DG+S +YRAFYA PLL R   G   NA+ GF NML K+L   +     SH  V
Sbjct: 3   QERVMIIDGNSLLYRAFYALPLL-RNRRGTFTNAVYGFLNMLSKVLSEYQ----PSHIIV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    T R+E Y +YK +RP  P  L  Q  ++R   +A  +  IE+ G+EADDII T
Sbjct: 58  AFDKDRKTLRSEEYGEYKIHRPPAPPELREQFGILREVLEALNVSYIEMSGYEADDIIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  A ++G    I++ D+D +QLVSP   +  T K     E+ D++ V  KW + P ++
Sbjct: 118 LSVRAGEQGLPCIIVTGDQDELQLVSPGIEVLVTKKGISEMERYDLQAVHGKWEVSPYQL 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             ++ L GD+ DNIPG+PGIG KTA  L+++YG+LE I  N + I               
Sbjct: 178 PDVKGLMGDASDNIPGVPGIGRKTAIKLVKQYGSLEGIYANLNEITP------------- 224

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          RL   L A +    ++R   T   D    
Sbjct: 225 ------------------------------VRLRELLTAHKDQAFLSRKLATIVKD---- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             V L++   + +    + E       +    S L D        ++P    +       
Sbjct: 251 --VPLEVEFEKLRRRPPQRERLVRVYQELEFNSLLKDLDKDKPPAESPTGPVI------- 301

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                      + +   +    + L      S  ++ D      +KP   ++   + +D 
Sbjct: 302 -----------VGDAGQVLDITRDLRPDEEVSLYLLADYHHPMWAKP--KSLFVANGEDV 348

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             F++                      +  L  L+ F ENE   K+ HN K+ ++VL RY
Sbjct: 349 YVFEM------------------EQDPRAALEKLRAFLENEEIGKLVHNGKFIEVVLKRY 390

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G+   G   D +L+SYVLD G S   ++     +L     E +    +   + K+     
Sbjct: 391 GLKFDGVRGDTLLLSYVLDPGFSGETLSEHLFHYLGEVVDEKMDPGLAVRGLKKL----- 445

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                           +L  KL  + L+++Y+ ++ P+  V++ ME TGI++D  +L ++
Sbjct: 446 --------------HQVLEEKLGSQDLVNLYKVVELPLSPVLADMEFTGIKVDPRILAEI 491

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E++  +   +  IY ++G++FN++S +QLG +LF  L  P   KTKTG + T+A+ LE
Sbjct: 492 SQELALRIAEDQARIYQVAGQEFNINSTRQLGKVLFEDLGLPPVKKTKTG-YSTSAEVLE 550

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++  G + II++I+E+R L+K+KSTY D+ P +I+  T RVHT +  A T TGRL+S+EP
Sbjct: 551 EL-YGSHEIIEHIVEYRTLAKLKSTYVDTFPGYIHPETGRVHTVFKQAVTATGRLSSVEP 609

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+ + G++IR+AF+       L+S DYSQI+LR LAH++    L + F   +DI
Sbjct: 610 NLQNIPIRMEEGRRIRKAFVPGDENHILLSCDYSQIDLRSLAHMSGDENLIETFRQGIDI 669

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+EIF V +++V+P +RR AK +NF I+YGIS F LA    + R EA  YI+RY  
Sbjct: 670 HHRTASEIFKVPLDQVTPDLRRKAKAVNFGIVYGISDFGLARGTGVTREEAKAYIERYLD 729

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +PG+  Y+++     R+ GYV T+ GRR +  ++ S   ++R++ ER A+NAPIQG++A
Sbjct: 730 SYPGVRRYMQEVVAMGREKGYVSTVLGRRRYLPDLLSSNRTVRSMAERMALNAPIQGTSA 789

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+SV++ L+   L ++MLLQ+HD+LVFEVP EE+   + ++   ME A      
Sbjct: 790 DIIKLAMLSVYRELKRRNLRSRMLLQVHDDLVFEVPLEELEEVALLVRDCMENA----FE 845

Query: 958 LRVPLKVNIKVSNNWQE 974
           L+VPL+V +KV  NW +
Sbjct: 846 LKVPLEVEVKVGANWYD 862


>gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
          Length = 1030

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/999 (30%), Positives = 495/999 (49%), Gaps = 65/999 (6%)

Query: 5    NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
              + ++DG+S ++RAF+A        DG   NA+ GF NML KL+++   +         
Sbjct: 68   KTIAVIDGNSLMHRAFHAIMQPMSAPDGRSTNALLGFFNMLIKLVRSFSPDG----IICA 123

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD      R ++ P YKA RP +   L  Q P+V+   +A  IP +E+QG+E DDI+ T 
Sbjct: 124  FDKGKPQVRIDMLPQYKAQRPPMDPSLHEQFPMVKELLRALQIPVVELQGWEGDDILGTL 183

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
             +  E +G+++ + + D+D+ QL +    +  T K       +  E V   + GI P  +
Sbjct: 184  AHQGELQGYSMLLFTGDRDIYQLATEHVSVVSTKKGVSDVRIMTPEDVDDLYHGITPNLV 243

Query: 180  VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
                 L GD+ DNIPG+PGIG K AA L+ EYG+LE ++ +A ++   K  EN+  + + 
Sbjct: 244  PDFYGLKGDTSDNIPGVPGIGPKRAAALIVEYGSLEGVIAHADQVSG-KMGENLRNHIDD 302

Query: 240  ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT-TYDCDAAN 298
            ARLS+++  +R D PIT+ L        +   +     AL FT L+ ++       + A+
Sbjct: 303  ARLSKRVATIRRDAPITVDLCAAAFPTFDPAEVARAFCALGFTNLVPKLLRFLPSLNGAD 362

Query: 299  IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            I+ ++ D  T   +  A+     + TT+      SL+      +++ TP    ++R Q +
Sbjct: 363  IKGIIHDAATAAKRNSAVLPASAQHTTMSA---DSLTSSVQAHSTQATPLDSLVDRAQTV 419

Query: 359  SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                             D            + +F            + ++  I      +
Sbjct: 420  HASEEEQTQSEVNTYAPDYSALFPACVQTQAHAF----------IKRVVSCGIWVACAYE 469

Query: 419  DTSFKVETIFIDLSVHTSQDS---------TGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
              S K     +  S  T  D+         T       ++ S LK   ++ H   I  N 
Sbjct: 470  PASMKSAQENVQPSFDTLLDTHTLWVTDGTTLAQFSGTDVSSVLKTLVKSGHV--IALNC 527

Query: 470  KYDKLVLHR-----------YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
            K    VL+              IS     D+ L +Y+L+S  + +   ++   +L     
Sbjct: 528  KALLHVLYPPVSSEPASLELSDISTAALFDVGLAAYLLNSDANDYSWQTLCSAYLPTFV- 586

Query: 519  EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
                      P       +  E+A+E +  +  L+ +LR  L  +    ++  L+ P+I 
Sbjct: 587  ---------YPDTTDDTDEPNEYALE-AIAVRALYPVLRELLHTDGSDDLFYELELPLIP 636

Query: 579  VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
            V+  ME  GI  D+ LL + S  +S  L ++   +  L+ + FN+ SP QL  +LF    
Sbjct: 637  VLLHMERNGIYCDKHLLAEQSRALSHELNAMSLELRRLAQQDFNIDSPMQLSHVLFDVWG 696

Query: 639  FPSG--AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
             P+    KT+ G + T AQ L  ++  D   ++ IL++R+  KIK+TY D+L + I    
Sbjct: 697  LPTKGLKKTRRGYYSTNAQTLASLSMAD-ERVQLILDYRERMKIKNTYLDALVHDIRSDG 755

Query: 697  QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
             R+H+ ++     TGRL+S +PNLQNIP ++ LG ++R+AF+ P     ++ DYSQIELR
Sbjct: 756  -RIHSTFNQTIAATGRLSSSDPNLQNIPTRSSLGHRVRKAFVLPRNHLFLACDYSQIELR 814

Query: 757  ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
            +LAH+++   L   F+   D H   AA IF V+ ++V+P +R  AK +NF I+YG   F 
Sbjct: 815  LLAHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNFGIVYGQQAFG 874

Query: 817  LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
            LAT L+I R EA + I RYF  +PG+ ++++++  F R++ YV T++GR+ H  +I+S  
Sbjct: 875  LATSLKISRKEAQEMIDRYFEAYPGVRKFLDESVQFAREHSYVPTMYGRKRHIAQIDSRN 934

Query: 877  SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
              +R+  ER A+N P+QGSAADI + AMI V K      LA+K++LQIHDEL FEV  EE
Sbjct: 935  FQLRSFAERTAMNHPMQGSAADIIKLAMIEVEKQFAQLGLASKLILQIHDELDFEVVPEE 994

Query: 937  ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +   S ++  +ME      + LRVPL   I  ++NW + 
Sbjct: 995  LERVSSVVKRAMEGV----VTLRVPLIAEISYADNWADA 1029


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/981 (32%), Positives = 506/981 (51%), Gaps = 87/981 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   + L DG++ ++RA++  P L+ +  G  V A  GF ++L K+L + + +     
Sbjct: 1   MNK-PVIVLFDGTNLVHRAYHVLPPLAIRKTGEVVGAAFGFASILIKVLTDLKPD----C 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           +A+ FD    TFR+E++  YKA RP +P+ L+ QL  VR    AF +P  E  GFEADD+
Sbjct: 56  YAISFDRKGPTFRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT------VKEEKIDIEHVIKKWGI 174
           + T    A   G  V I S D D MQLV P   +               D   V  K+G+
Sbjct: 116 LGTLATRAAAAGMEVIIASGDADSMQLVGPDIRILYPGPAGSFASTSLYDEVAVRAKYGL 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE +   +AL GD  DNIPG+PGIG KTA  L++EYG +E+I  N  +I     ++ + 
Sbjct: 176 GPEHIADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKKL- 234

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
             A+ A ++R                                         +++ TT  C
Sbjct: 235 --ADNAEVARD----------------------------------------SKILTTIVC 252

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D      + LD +  E +      +   D   +  +F  L D+     ++          
Sbjct: 253 D------LPLDFSIEECRAEHYNRQKVVD-LFRELEFFRLIDRLPGGENQLQGTPDMFAV 305

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
             K+    +       + ++++I   V +L      +  +     +A  ++  A+A+S+ 
Sbjct: 306 ASKVETRYM-------VADSQNIDSIVSRLANAKELALAVSGTPEEAMDARLTALALSSA 358

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                     +  F+      S  ++       E  S L     +E   K  HN KY   
Sbjct: 359 AG--------DACFVPAEFIGS--ASEGQMFAAEGHSGLAALLGDEKISKTAHNAKYLMN 408

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +L   G +++G + D M+ +++L  G  +  I  +  +       +I      +      
Sbjct: 409 LLLSAGQAVKGLDFDTMIAAHLL--GEKNLAIKDLVFEHFGIEIADIENILTRNGKKASF 466

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S+ Q+ E A   ++   +L  +   +L   +L+ ++ R++ P++ ++  ME TGI +D D
Sbjct: 467 SEVQLSEAAQLAADYTFRLKGIFAAQLAETRLMDLFARVEMPLLPILLGMERTGIMLDTD 526

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LLK ++ +  + +  LEE+IY  +G  FN+ SP+QLG ILF +LK P   KTKTG + T 
Sbjct: 527 LLKAMAEKTGRQIFKLEEDIYARAGHNFNIGSPQQLGRILFDELKLPVIKKTKTG-YSTG 585

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+ LE++  G + I+  ILE+R L K+KSTY D+LP  +N  T+R+HT ++   T TGRL
Sbjct: 586 AEVLEELK-GKHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRL 644

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP++ ++G++IRRAFI+PP   L++ DYSQI+LR+LAH+++   L + F++
Sbjct: 645 SSSEPNLQNIPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQS 704

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA +  +   KV+ + RR AKT+NF +IYG+S + L     +   EA  +IK
Sbjct: 705 DQDIHTATAARLLNIPPSKVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIK 764

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF ++P +  Y  + K  VR  GYVET+ GRR +  EINSP   +R   ER AIN P+Q
Sbjct: 765 AYFEKYPRVAVYFSEIKQQVRTQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQ 824

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G++ADI + AM+ + + L++ KL +++LLQ+HDEL+FEVP+ E+   S ++V +M  A  
Sbjct: 825 GTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPKTELGRMSDLLVETMSGA-- 882

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             +   +PLKV +K   NW +
Sbjct: 883 --VAFEIPLKVELKSGANWGD 901


>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
 gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
          Length = 882

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/980 (30%), Positives = 510/980 (52%), Gaps = 110/980 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L ++DG+S I RAFYA P +S   +GL  NAI GF  M++K++++ +     +H +V
Sbjct: 2   EKRLIIIDGNSIINRAFYALPDMSN-SEGLKTNAIFGFVRMMFKIIEDYQ----PTHMSV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++ Y DYKA R K+P+ L  QL  ++     F I  +E++G+EADD+I T
Sbjct: 57  AFDKKAPTFRHKQYADYKAGRKKMPDELAQQLQPLKDLLDKFNINRLELEGYEADDLIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              + E+  F V I++ DKD +QL S  T    T K     E+ + + V++++ + P + 
Sbjct: 117 VARLGEENDFKVYIVTGDKDAIQLASHKTTTLITKKGVGEVEEYNYDSVLERYEMTPTQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PG+G KT   LL++Y  +E                N++E+ + 
Sbjct: 177 IDLKGLMGDKSDNIPGVPGVGEKTGIKLLKQYSTIE----------------NLIEHTDE 220

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            + S           I   +E                         N+       + A I
Sbjct: 221 LKGS-----------IKKKIEE------------------------NKELALMSKELATI 245

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
              V      E+       + D     K   F+SL  +   I   +T             
Sbjct: 246 ITNVPIEVKLEDLAYGDYNKDDVVEKFKEFGFTSLITKLLDIEGGET------------- 292

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I  +   KI +  +++ +++K E        +I    +    + + + +S       
Sbjct: 293 --TIKEEIDLKIEHLDNVEDFIKKAEENKKVIIDVIGKEGNILDKRVLYVFLSL------ 344

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                             D      + ++ L  +K    N    K G+++K D ++L  Y
Sbjct: 345 ------------------DGNEIYYVNEDELPQIKTLLSNPEIKKHGYDLKEDYILLKPY 386

Query: 480 GISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            I +   + DI +  Y++DS   +S++ ++IA K+L+     ++++L     +   D+I 
Sbjct: 387 EIELNSMDFDITIAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLLGKGAKAKKFDEIE 446

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++  +  +  N +  ++L +  KL   ++  ++  ++ P+++V+  ME  G+++D+D 
Sbjct: 447 FDELSAYIGDILNTVNGVYLKMEEKLKETEMDGLFYHVEMPLVEVLGSMEYIGMKVDKDQ 506

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++  + +  +  LE  I++L+GE FN++SPKQLG +LF KL  P   KTKTG + T A
Sbjct: 507 LNELKEKFTTIINELENEIFELAGEPFNINSPKQLGVVLFEKLGLPVIKKTKTG-YSTNA 565

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE++    + II  I E+RQ+ K+ STY + L   IN +T R+H+ ++   T TGR++
Sbjct: 566 EVLEKLR-DKHEIIDKITEYRQIVKLNSTYVEGLLKIINPKTGRIHSSFNQTITTTGRIS 624

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPN+QNIP+KT++G+ IR+ F++    KL+ ADYSQ+ELR+LAH++    +   F++ 
Sbjct: 625 STEPNMQNIPVKTEMGRDIRKVFVADENCKLVDADYSQVELRVLAHMSGDENMIDAFKHG 684

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A++IF V+I+ V+ + R  AK INF IIYG + F L+  L IP + A  YI  
Sbjct: 685 EDIHSKTASQIFDVDIKDVTSKQRIEAKAINFGIIYGKTDFGLSQDLNIPVATAKAYIDS 744

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF+++P I E++++      + GY  TI  RR +  EI +    +RN  +R A+NAPIQG
Sbjct: 745 YFNKYPKIKEFMDEAVESATETGYATTILNRRRYIPEIKASNFIVRNQGKRFAMNAPIQG 804

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM++V+  L+++ + +K++LQ+HDEL+ E  +EE+  A +I+   ME A   
Sbjct: 805 SAADIIKVAMVNVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVREEMENAQ-- 862

Query: 955 KINLRVPLKVNIKVSNNWQE 974
             ++ V L V++   ++W E
Sbjct: 863 --SMDVKLDVDLNTGDSWYE 880


>gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
 gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
          Length = 889

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/982 (30%), Positives = 477/982 (48%), Gaps = 108/982 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFY   +L+   DG P NA+ GF  +L KL+   + ++        F
Sbjct: 2   KLMVIDGNSIVNRAFYGVHMLTT-RDGQPTNAVYGFLTILQKLVDEEKPDA----LCCTF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+  Y  YKA R  +P+ L  Q+P+++    A  IP  E+ G+EADD+I T +
Sbjct: 57  DRKAPTFRHLAYEGYKAQRKGMPDELASQMPILKEVLDAMNIPRYEMDGWEADDLIGTIS 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
                 G+   +++ DKD +QLV+  T              +++  +   + +G  P  +
Sbjct: 117 VKDAAAGWDTVVVTGDKDSLQLVTDRTRVKLVSTRMGQTTTKEMTPDTFRETYGFDPIHI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-KRRENILEYAE 238
           + L+AL GD+ DNIPG+ G+G KTA  L+Q Y ++E I  +  +++ K    + + E  E
Sbjct: 177 IDLKALMGDASDNIPGVKGVGEKTAMDLIQRYQSVEAIYADLDKVEAKPAVLKKLTEGRE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +S  L  +RTD P       L  +  +  R     K +   +L              
Sbjct: 237 QAMMSYDLATIRTDAP-------LDFKPEDAAR-----KEVNQAELYQLFLKL------- 277

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                          +FS L D+      +     +  E     
Sbjct: 278 -------------------------------EFSKLIDKMGLKAPQGEAAAVTEE----- 301

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            Q         ++ +    ++ +       S       D +       +A+     + + 
Sbjct: 302 -QAVTGTCESEEVTDLTRAEELLAIWRGQESV------DVLALPDLNAVAVEWWESESRS 354

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +         L     +   G           LK  F      K  H++K     L  
Sbjct: 355 RAAV--------LRADKLEGYNG----------VLKALFA-ADIKKNTHDVKTLLSRLLE 395

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD-- 535
            G+   GF  D  + +Y+L     S+++  +    ++Y  +E  K++ + +  D  S   
Sbjct: 396 EGVEGDGFVFDTAIAAYLLAPTDGSYELEKLG---ITYFNQEFAKAKDTYLAPDAFSPLA 452

Query: 536 --SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             + V    + +  +I  L  +L P+L    +  +Y  ++ P+  V+S ME  G+ +D+ 
Sbjct: 453 DQTAVLGGMLSHCALIGALKKVLAPRLEELGMHQLYYDIELPLCQVLSAMEHAGMLVDRK 512

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L +    + + + + +  IY+L+GE FN++S +QLG ILF KL  P   KTKTG + T 
Sbjct: 513 ALSEFGDMLDERIAADQAEIYELAGETFNINSTQQLGKILFDKLGLPPVKKTKTG-YSTN 571

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+ LE++  G +PII  ILE+RQ +K+KSTY D L   I     R+HT +    T TGRL
Sbjct: 572 AEVLEKLR-GQHPIIDKILEYRQYTKLKSTYVDGLGKVIAPDG-RIHTSFQNTVTATGRL 629

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP++T+LG ++R+ F++P  K L+ ADYSQIELR+LAHIA    + + F  
Sbjct: 630 SSTEPNLQNIPVRTELGAELRKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIEAFRT 689

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH + AA++FGV +++V+  MR  AK +NF I+YGIS F L+  + +P  EA +YI+
Sbjct: 690 GEDIHTVTAAQVFGVPVDQVTKHMRSSAKAVNFGIVYGISAFSLSQDIGVPTYEAKEYIE 749

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF RF G+H Y+    N  + +GYV T+FGRR    E+ S   + R+  ER A+N PIQ
Sbjct: 750 KYFARFSGVHAYMTDVVNRAKTDGYVSTLFGRRRWLPELKSSNFNTRSFGERVALNMPIQ 809

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM+ VH  L +  L  +++LQ+HDEL+ E PEEE  T   ++   ME    
Sbjct: 810 GTAADIMKLAMLHVHSRLREEGLQARLILQVHDELIVECPEEEAETVKALLSREMESVA- 868

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
               L VPL  +     +W E 
Sbjct: 869 ---QLAVPLIADAAAGRSWAEA 887


>gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10]
          Length = 887

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/986 (32%), Positives = 498/986 (50%), Gaps = 116/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    EK GF  TI++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++  
Sbjct: 179 TEFIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRD 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A     L      +    P+                               T D D 
Sbjct: 239 KDKAF----LAKKLATIDRDSPV-------------------------------TIDIDD 263

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              EPV  +      + +     +         Q  +                       
Sbjct: 264 VKREPVDYEKLWQFYEKMNFRKFLAELNASGAGQDGA----------------------- 300

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 +    YT + +         K     +  F +     +   +  +  ++   D+
Sbjct: 301 -----EVEKVEYTVLNDDNVKDV---KATEKDTVEFYLEMLGANYHLADFVGFSLKINDK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         + V    D   ++         +K   E+E   K   ++K   +  
Sbjct: 353 --------------IYVSRDVDLLEEDN--------IKHILEDEKIKKNVFDLKRSMVGA 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR GI   G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    KS  IP D
Sbjct: 391 HRLGIHTHGLDYDMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++  H     N I  L   L  KL   +   +++ ++ P   V+++MEI G++++
Sbjct: 451 ---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDDLFDTIEIPTARVLAKMEINGMKVE 507

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  E +  L  LE+ IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 508 ASTLIQLQNEFAVKLQDLEKKIYQQAGEEFNLNSPKQLGHILFEKLGLPVLKKTKTGY-- 565

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+K IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 566 STSVEVLDQLKTQSPIVKEILDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYLQTLTATG 624

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 625 RLSSVDPNLQNIPTRTEEGKQIRKAFVPSDPDGYIFSCDYSQVELRVLAHVSGDVHMQEA 684

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF ++  +KV+P MRRHAK +NF I+YGIS + L+  L I R +A 
Sbjct: 685 FKTGYDIHSHTAMKIFHLDSPDKVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAK 744

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I +Y++K     R+ GY ETI  RR +  +I++ K ++R   ER AIN
Sbjct: 745 EFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAIN 804

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 805 SPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQ 864

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 865 SA----VKLDVPLIADSGWGHNWYDA 886


>gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
 gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
          Length = 887

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/986 (32%), Positives = 503/986 (51%), Gaps = 116/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL++       +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLLKDI----DPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    EK GF  TI++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFVDKGEKNGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E I  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSVEGIYDHIDEMKKSKLKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A     L      +                                           
Sbjct: 239 KDKAF----LAKKLATIDRD---------------------------------------- 254

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV LDI+  + + +  E        +   +F  L+D  +    + + +   +E   
Sbjct: 255 ---SPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKF--LADLNASGAGQDSTEVEKVE--- 306

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++N  +++    K     +  F +     +   +  +  ++   D+
Sbjct: 307 ------------YIVLNDDNVKDV--KATEKDTVEFYLEMLGANYHLADFVGFSLKINDK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         + V    +   ++         +K   E+E   K   ++K   +  
Sbjct: 353 --------------IYVSRDVELLEEDN--------IKHILEDEKIKKNVFDLKRTMVAA 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR GI   G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    KS  IP D
Sbjct: 391 HRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++  H     N I +L   L  KL   +   +++ ++ P   V+++ME+ G++++
Sbjct: 451 ---DDELFNHLASKVNAIEKLKPELLKKLKEHEQDALFDTIEIPTARVLARMEMNGMKVE 507

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  E +  L  LE+ IY  +GEKFNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 508 ASTLIQLQNEFTVKLKELEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGY-- 565

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYLQTLTATG 624

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 625 RLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEA 684

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 685 FKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQ 744

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I +Y++K     R  GY ETI  RR +  +I++ K ++R   ER AIN
Sbjct: 745 EFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAIN 804

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 805 SPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQ 864

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 865 SA----VKLDVPLIADSGWGHNWYDA 886


>gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99]
          Length = 875

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/978 (30%), Positives = 463/978 (47%), Gaps = 112/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLL  K  G+  NA+ GF  +L K+++  +     +HF V 
Sbjct: 2   DKLILIDGNSLSFRAFYALPLLKNKA-GIHTNAVYGFARLLEKIIKEEQ----PTHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y DYK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHETYQDYKGGRQKTPPELSEQFPYIRQLIDAYQIQRYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A++ G    II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SREADQAGMQTIIITGDRDLTQLATDQVTIYYTKKGVTDVDHYTPQFIAEKYNGLKPSQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GDS DNIPG+ G+G KTA  LL ++G +E +  +   +  K            
Sbjct: 177 IDLKGLMGDSSDNIPGVAGVGEKTAMKLLNQFGTVEGVYDHIEEVSGK------------ 224

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                          +L   L+      L+++   T +CD+   
Sbjct: 225 -------------------------------KLKEKLENSRDDALMSKTLATINCDSP-- 251

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
               + ++  + +      E  +    K+ +F  L D         T  + F+       
Sbjct: 252 ----ITVSLEDTRLPQKMDESAKIELFKSLEFRQLLDGMDVEADNATASRDFVPTTNMSK 307

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                                      +  A+  +     +    + +   +   +Q   
Sbjct: 308 V----------------------DFTQLSEAAIHVEVAGPNYLKDELLKFGLYDGEQYVV 345

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             F     +                        L  + E+E   K  H+ K   + + R 
Sbjct: 346 IPFDKVNEYP----------------------ELVAWLEDETTQKWVHDAKKTYIAMKRS 383

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            I++     D ML SY++D  R+  D+ S+   +     ++ +             D  +
Sbjct: 384 DIAIENVVFDTMLASYIIDPSRTIEDVQSVMTHFDQTFVQDDVSVYGKGKSFHIPEDDIL 443

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +H     + I  +   +   L   +   +   ++ P+  ++S+ME  GI  D D LK++
Sbjct: 444 DKHIASILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDTLKEM 503

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
              I   L  L E I++ +GEKFN++SPKQLG ILF KL+ P   KTKTG   +TA D+ 
Sbjct: 504 ETVIQTELDQLIEQIHEQAGEKFNINSPKQLGVILFEKLELPVIKKTKTGY--STAVDVL 561

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +PII NIL +R LSK++STY + L   I     R+HT ++     TGRL+S++P
Sbjct: 562 EKLQNAHPIIDNILTYRTLSKLQSTYVEGLQKVIWDDG-RIHTRFNQTLAQTGRLSSVDP 620

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+ + G+KIR+AF S      +++ADYSQIELR+LAHI     L Q F ++ D+
Sbjct: 621 NLQNIPIRLEEGRKIRKAFKSTHEDYVILAADYSQIELRVLAHITGDPTLQQAFNDNEDV 680

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++F V   +V+  MRR AK +NF I+YGIS + L+  L I R EA  +I  Y +
Sbjct: 681 HTTTAMKVFNVAAGEVTSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKEAQRFIDDYLN 740

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y++      +Q GYVET+  RR +  +I S   ++R   ER A+N+PIQGSAA
Sbjct: 741 HFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRGFAERTAMNSPIQGSAA 800

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+  H+ ++      ++LLQ+HDEL+FEVP++E+    + +   M  A    + 
Sbjct: 801 DIIKLAMVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHA----LQ 856

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPL V       W + 
Sbjct: 857 LDVPLSVESDYGKTWYDA 874


>gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26]
 gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932]
 gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55]
 gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79]
 gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291]
 gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58]
 gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291]
          Length = 882

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/980 (33%), Positives = 512/980 (52%), Gaps = 110/980 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L ++DG+S I RAFYA P ++ K +GL  NAI GF  ML+K++   +     +H +V
Sbjct: 2   EKKLIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+  Y +YKA R  +P+ L  QL  ++     F I  +EI G+EADDII T
Sbjct: 57  AFDRKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFKINRLEIDGYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +  AE  G+ V I++ DKD +QL S  T    T K     E+ +   VI+K+ + P + 
Sbjct: 117 VSKKAENNGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPAQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+PGIG KT   L++E+ ++E                N++E  + 
Sbjct: 177 IDLKGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIE----------------NLIENTDK 220

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            + S           +   +E          RL           +I  V    D D+   
Sbjct: 221 LKGS-----------VKKKIEENKEIAIQSKRLA---------TIIRDVPIEVDLDSMVF 260

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                D    + +               TS  S L D     ++E   +K+         
Sbjct: 261 GDYDKDELLDKFRYFGF-----------TSLLSRLVDLVDSDDTEHVEEKI--------- 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                     +I+  KD ++++ ++   G    K +    +      I I IS   +K  
Sbjct: 301 ----------EILKLKDTEKFIDEVNKKGQVILKTVRGQGNILEKNIIYIFISVDGEKIY 350

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                     + E+ S L   F N    K G+N+K D + L  Y
Sbjct: 351 Y-----------------------VDSNEV-SKLDSIFSNNEIKKYGYNLKDDYISLKPY 386

Query: 480 GISMRG-FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            I++   + DI +  Y++DS  S S+D ++IA K+LS     ++E+L     S   + + 
Sbjct: 387 NINLENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLE 446

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + E+  +    + +   ++   L+   +  ++  ++ P+++V+  ME  GI++D+ +
Sbjct: 447 FEDLAEYMGQIICTVKETIPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSI 506

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++S E  + + +LE+ IY+LSGE FN++SPKQLG ILF KL+ P   KTKTG + T A
Sbjct: 507 LDELSVEFKEIIATLEKEIYELSGEPFNINSPKQLGVILFEKLELPIIKKTKTG-YSTNA 565

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    +PII  I E+RQ+ K+ STY + L N IN  + R+H+ ++   T TGR++
Sbjct: 566 DVLEKLR-DKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQTITTTGRIS 624

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPIK ++G+KIR+ FI+    KL+ ADYSQ+ELR+LAH+++   + + F++ 
Sbjct: 625 STEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHH 684

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+++F V +E V+ ++R  AK +NF IIYG S F LA  L IP  +A +YI+ 
Sbjct: 685 EDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIES 744

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF ++  I E+++ T     ++GY  TI  RR +  EI S     RN  +R A+NAPIQG
Sbjct: 745 YFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQG 804

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI+VHK LE++ L +K++LQ+HDEL+ E  ++EI    +I+   ME A   
Sbjct: 805 SAADIIKIAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENA--- 861

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            +N+ V L V++ V ++W E
Sbjct: 862 -VNMDVHLDVDLNVGSSWYE 880


>gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 876

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/982 (31%), Positives = 476/982 (48%), Gaps = 119/982 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLL  K  G+  NA+ GF  +L K+++  +     +HF V 
Sbjct: 2   NKLILIDGNSLSFRAFYALPLLQNKA-GIHTNAVYGFAMLLEKIIKEEQ----PTHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P VR    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEQYSEYKGGRQKTPPELSEQFPYVRQLLDAYQIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A  E F   I++ D+DL QL +    +Y T K     +    E + +K+ G+ P ++
Sbjct: 117 SKQANAEKFETIIVTGDRDLTQLATDDVTIYYTKKGVTDVDHYTPEFIAEKYDGLVPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL+++  +EN+  +   +  KK           
Sbjct: 177 IDMKGLMGDASDNIPGVAGVGEKTAIKLLKKFSTVENVYNHIEEVSGKK----------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   L+  +   L+++   T +CD + I
Sbjct: 226 --------------------------------LKEKLENSKSDALMSKELATINCD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D    E+     + +I      K  +F  L DQ     +  + ++L LE     S
Sbjct: 253 EVTLADTKLPESPDSTAKIDI-----FKKLEFKQLLDQVDVEGTHTSAEELELEITSDFS 307

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               N  S   I                         D  +      +  A+        
Sbjct: 308 NVDFNELSEATIH---------------------FELDGSNYLKDDILKFALYDGSNHVV 346

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   +                        L  + EN+   KI ++ K   +V HR 
Sbjct: 347 IDADKVHDYP----------------------ELIAWLENDKTEKIVYDAKKSYIVAHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKIS 534
            I+++    D+ML SY++D  R+  D+ S+   +  +  KE      K +K  +P D+I 
Sbjct: 385 DIAIKHIVFDVMLASYIIDPSRTIDDVNSVVSYFDQHYVKESIEVFGKGKKRHVPEDEIL 444

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D     H       I +    +  +L      ++ + L+ P+  ++S+ME TGI      
Sbjct: 445 DH----HVGTIIEAINKTKPKMEAQLEEYNQTNLLDDLELPLARILSEMEETGIYTVATD 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+++  EI   L  L  NIY+ +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA
Sbjct: 501 LQEMEKEIQAKLDVLINNIYNAAGESFNINSPKQLGVVLFETLELPVIKKTKTGY--STA 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +   G +PII  ILE+R LSK++STY + L   I++   R+HT ++     TGRL+
Sbjct: 559 VDVLEQLQGQHPIIDYILEYRTLSKLQSTYVEGLQKVISEDN-RIHTRFNQTLAQTGRLS 617

Query: 715 SLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S++PNLQNIPI+ + G++IR+AF  S     + SADYSQIELR+LAHI +   + Q F N
Sbjct: 618 SVDPNLQNIPIRLEEGRRIRKAFKSSDDNNVIFSADYSQIELRVLAHITQDESMKQAFIN 677

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I 
Sbjct: 678 DEDIHTATAMKVFNVQPDEVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKQAKQFID 737

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            Y   FPG+ +Y+E      +  GYVET+  RR +  +I S   ++R   ER A+N PIQ
Sbjct: 738 DYLDSFPGVKQYMEDIVKDCKAQGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQ 797

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM++    ++      ++LLQ+HDEL+FE+P++E+   S+ I   M+ A  
Sbjct: 798 GSAADIIKLAMVNFVNEVKHTDFHAQLLLQVHDELIFELPKDEVEAFSEFIEEIMDNA-- 855

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + L VPLKV       W + 
Sbjct: 856 --LALDVPLKVETSHGKTWYDA 875


>gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51]
 gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 873

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/979 (30%), Positives = 476/979 (48%), Gaps = 125/979 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + ++DG+S   RAFYA P+++   DG P N + GF  ML +LL   + +    ++ V F
Sbjct: 3   KILILDGNSLANRAFYALPMMTTA-DGKPTNVLHGFMTMLLRLLLEQKPD----YWVVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T R E Y DYKA R + P+ L PQ   ++    AF +P +E  G+EADDIIAT T
Sbjct: 58  DKTKATVRIEQYADYKAQRKETPDALKPQFDFLKELLTAFAMPILECPGYEADDIIATVT 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE+  +   I + D+D +QL+SP T +Y T K     +  D   + +K+ + P +++ 
Sbjct: 118 SLAEQREWETQIYTGDRDALQLISPRTTVYLTRKGITEVDAYDEGALYEKYQLRPAQIID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD+ DNIPG+PG+G KTA  LL EYG++EN+L N  +I  KK +EN+    + A 
Sbjct: 178 LKGLMGDASDNIPGVPGVGEKTALKLLWEYGSVENVLDNIDKISGKKLQENLRNNTDKAL 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+KL  +  D+P+ I          +  RL+   +  +       +        A I  
Sbjct: 238 LSKKLATMLYDIPLEI----------DLDRLV--YRRPDEKTFTAALDKYVLKSVARI-- 283

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                   E+ G   E                          + TP++  L+        
Sbjct: 284 ------WHEHHGAGEE-------------------------GKDTPREEVLKPWP----- 307

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETI----GSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     +     ++W+ +        G+          +   ++  A  I+   + 
Sbjct: 308 ----------LRELTGEEWLARFPQWQADQGTLVLTCANTGGNPHWARITAWGIAVGGES 357

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                         E+     +  E+    K   + K    +L 
Sbjct: 358 FILNWTDAAP--------------------EVRLAFSQLLEDSEVPKQVADSKVLYSLLL 397

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
              I +RG   DI L +Y+++  R+  +   + +++                    I  +
Sbjct: 398 NEEIILRGVSLDIGLAAYLINPTRNKFEPLELVKEY--------------------IPGA 437

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +  E ++ + Q+    +  L    L  +   +++P+  ++++ME  GI +D   L+
Sbjct: 438 GEFANLAEEASALAQVADSYKETLEELGLSALLHEMEEPLSPILAEMEKQGIAVDVQRLQ 497

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +   E++  L  LE+ IY  +GE FN++SP+QLG ILF KL  P   KTKTG   +T  D
Sbjct: 498 EFGRELTVELQRLEQEIYADAGETFNINSPQQLGHILFEKLGLPPMKKTKTGY--STDAD 555

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +     + I++ +L++RQLSK+ STY + L   I++   RVHT +    T TGRL+S 
Sbjct: 556 TLEELRDQHSIVERVLDYRQLSKLMSTYVNGLLAQIHEG--RVHTTFQQTVTATGRLSST 613

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+ +LG+ +R+ F        L+SADYSQIELRILAH ++   L + F  + 
Sbjct: 614 EPNLQNIPIRLELGRLLRKVFTPTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQ 673

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H   A+E+FG+ + +V+  MRR AK +NF +IYG++ F L   L +PR EA  YI+ Y
Sbjct: 674 DVHTRTASEVFGIPMAEVTKDMRRKAKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETY 733

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           FHR+ G+  Y+E+     ++ G V T+  R     E+  P    R   ER A+N PIQG+
Sbjct: 734 FHRYEGVKRYLEEIVVKAKEEGQVRTLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGT 793

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V ++L+       +LLQ+HDELV EV  E++   ++++   ME A    
Sbjct: 794 AADIMKLAMLGVAEALK--PYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESA---- 847

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL  + K   NW +
Sbjct: 848 FPLSVPLIADCKTGPNWYD 866


>gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
 gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
          Length = 891

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/983 (28%), Positives = 464/983 (47%), Gaps = 100/983 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   + L L+DG S  YRAF+A P+ +     G   NA+ GF +ML  +L++       +
Sbjct: 1   MIDVDRLLLIDGHSVAYRAFFALPVENFATTTGQHTNAVFGFTSMLINVLRDE----TPT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD    TFR E Y +YK NR K P+    Q+PL++    A GI   E  GFEADD
Sbjct: 57  HVAVAFDVSRRTFRTEEYAEYKGNRSKSPDEFKSQIPLIKEVLDALGIRTFEKDGFEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIP 175
           II T T  A++ G  V I + D+D +QLV+ TT +    K      ++  E V +K+G+ 
Sbjct: 117 IIGTLTREAQEAGMEVLICTGDRDALQLVTDTTTVLYPRKGVSDLARMTPEVVREKYGVD 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +   L AL G++ DN+PG+PG+G KTAA  +  YG+LE+++    ++   K   ++ E
Sbjct: 177 PAQYPELAALVGETSDNLPGVPGVGPKTAAKWIATYGSLESLVAEVDQVPG-KAGASLRE 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + ++   +R++  L  D+ +                       L F+   NR        
Sbjct: 236 HLDSVLRNRRINALVRDLSLDAVPAD-----------------LAFSTKWNR-------- 270

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                           + I    +      ++   FS L      + ++           
Sbjct: 271 ----------------EAIHTVFDSLEFAALRERLFSYLGGGDESVAADAAVDVEL---- 310

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                          +V    +  W+ +         ++  DT     ++  A+AI+T D
Sbjct: 311 --------------TVVPAGGVAAWLSEHVGADPVGLEVDGDTT-PTDARARALAIATAD 355

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                                    G +TL  +  + +  +  +     + H+ K     
Sbjct: 356 GHAA-------------------WVGVDTLDADDEAAIAGWLADAERPVVLHDAKGQLHA 396

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L   G ++RG   D  + +Y++   + ++D+A ++ ++L +       +    +  +++ 
Sbjct: 397 LAAQGWTVRGLVADTAIATYLVRPDQRAYDLADLSVRYL-HRELVTTGADTGQLAFEEVD 455

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                + A++ +   L LW ++  +L     + +   L+ P++DV+  ME TGI +D D 
Sbjct: 456 TG--ADVAVQRARAALDLWAVIGAELEASDSMSLLADLELPLVDVLMTMESTGIAVDTDH 513

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  + AE ++ +L   +  Y + G + NL SPKQL  +LF +L  P   +TKTG      
Sbjct: 514 LDTLHAEFTERMLGAAQEAYAVIGREVNLGSPKQLQVVLFDELGMPRTKRTKTGYTTDAD 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                     +P ++++L  R +++++ T  + L   +     R+HT Y+     TGRL+
Sbjct: 574 ALQGLFAKTQHPFLEHLLAHRDVTRLRQT-VEGLQKTVAPDG-RIHTTYAQTIAATGRLS 631

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+T+ G++IR AF   P  + L++ADYSQIE+RI+AH+++   L + F  
Sbjct: 632 SADPNLQNIPIRTESGRRIREAFCVGPGFETLLTADYSQIEMRIMAHLSEDAGLIEAFRT 691

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D H ++AA++F  +   +   +R   K +N+ + YG+S + L  QL I   +A   + 
Sbjct: 692 GEDFHTVMAAKVFDRDPGDIDGGLRARIKAMNYGLAYGLSSYGLGQQLGISPGDAQVLMD 751

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  F G+ +Y+    +  RQ G+  TI GRR +  ++ S     R + ER A+NAPIQ
Sbjct: 752 DYFQTFGGVRDYLHGVVDEARQTGFTATILGRRRYLPDLQSDNRQRREMAERMALNAPIQ 811

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAAD+ + AM+ V ++L D  L ++MLLQ+HDELV EV   E      ++   M  A  
Sbjct: 812 GSAADLIKVAMLGVDRALADAGLGSRMLLQVHDELVLEVAPGERDALEALVREQMAAAA- 870

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
              +L VPL V++ V   W E  
Sbjct: 871 ---DLSVPLDVSVGVGRTWHEAG 890


>gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 887

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/986 (32%), Positives = 507/986 (51%), Gaps = 116/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDIDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    EK GF  T+++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFVDKGEKNGFTTTVVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E I  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSVEGIYDHIDEMKKSKLKENLIND 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A     L      +                                           
Sbjct: 239 KDKAF----LAKKLATIDRD---------------------------------------- 254

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV LDI+  + + +  E        +   +F  L+D  +    + + +   +E   
Sbjct: 255 ---SPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKF--LADLNASGAGQDSTEVEKVE--- 306

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++N  +++    K     +  F +     +   +  +  ++   D+
Sbjct: 307 ------------YIVLNDDNVKDV--KATEKDTVEFYLEMLGANYHLADFVGFSLKINDK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         + V    +   ++         +K   E+E   K   ++K   +  
Sbjct: 353 --------------IYVSRDVELLEEDN--------IKHILEDEKIKKNVFDLKRTMVAA 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR GI  +G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    KS  IP D
Sbjct: 391 HRLGIHTQGLDYDMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++  H     N I +L   L  KL   +   +++ ++ P   V+++ME+ G++++
Sbjct: 451 ---DDELFNHLASKVNAIEKLKPELLKKLKEHEQDALFDTIEIPTARVLARMEMNGMKVE 507

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  E +  L  LE+ IY  +GEKFNL+SPKQLG ILF KL  P   KTKTG + 
Sbjct: 508 ASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTG-YS 566

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + L+Q+    +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 567 TSVEVLDQLKM-QSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYLQTLTATG 624

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 625 RLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEA 684

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 685 FKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQ 744

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I +Y++K     R  GY ETI  RR +  +I++ K ++R   ER AIN
Sbjct: 745 EFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAIN 804

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 805 SPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQ 864

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 865 SA----VKLDVPLIADSGWGHNWYDA 886


>gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 876

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/978 (30%), Positives = 479/978 (48%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +                E + E+ + 
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTV----------------EGVYEHLD- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + +G +L   L+  +   L+++   T + D + I
Sbjct: 220 --------------------------EISGKKLKEKLQNSKENALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNVDFTSL----------------KEATIHFELDGGNYLRNNILKFSLFTGEKHIV 346

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +      +                      + L  + EN +  K+ ++ K   +  HR 
Sbjct: 347 INADDIINY----------------------AELVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  G+VET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
 gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
          Length = 887

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/986 (32%), Positives = 501/986 (50%), Gaps = 116/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  D L  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDSLHTNAIYAFKNMLDVLL----KDVDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    EK GF  TI++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++  
Sbjct: 179 TEFIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRD 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A     L      +    P+                               T D D 
Sbjct: 239 KDKAF----LAKKLATIDRDSPV-------------------------------TIDIDD 263

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              EPV              + E  R    K +    L++  +    +   +   +E   
Sbjct: 264 VKREPV--------------DYEKLRQFYEKMNFRKFLAELNASGAGQDGAEVEKVE--- 306

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++N  +++    K     +  F +     +   +  +  ++   D+
Sbjct: 307 ------------YTVLNDDNVKDV--KATEKDTVEFYLEMLGANYHLADFVGFSLKINDK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         + V    +   ++         +K   E+E   K   ++K   +  
Sbjct: 353 --------------IYVSRDVELLEEDN--------IKHILEDEKIKKNVFDLKRSMVGA 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR GI   G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    KS  IP D
Sbjct: 391 HRLGIHTHGLDYDMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++  H     N I  L   L  KL   +   +++ ++ P   V+++ME+ G+++ 
Sbjct: 451 ---DDELFNHLASKINAIESLKKPLLEKLKDHEQDALFDTIEIPTARVLARMEMNGMKVK 507

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  E +  L  LE+ IY  +GEKFNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 508 ASTLIQLQNEFAVQLKELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGY-- 565

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYLQTLTATG 624

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 625 RLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEA 684

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF ++  + V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 685 FKTGYDIHSHTAMKIFHLDSPKDVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAK 744

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I +Y++K     R+ GY ETI  RR +  +I++   ++R+  ER AIN
Sbjct: 745 EFIDNYFEQYPQIRDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAIN 804

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K LE+  L TKM+LQ+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 805 SPIQGSAADIIKIAMINMQKKLEEMHLKTKMVLQVHDELIFDVPKDELETVKKIVPEVMQ 864

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 865 SA----VRLDVPLIADSGWGHNWYDA 886


>gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
 gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
          Length = 1022

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1046 (30%), Positives = 511/1046 (48%), Gaps = 103/1046 (9%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
              +  ++L+D  +FI+RA++A           G+P  A   F NM+ KL    RK+    
Sbjct: 5    TDKPPIYLLDSMAFIFRAYHAMQRSRPMSTRTGIPTAATYVFVNMINKL----RKDFQPQ 60

Query: 60   HFAVIFDYPAVTFRNE---------------------IYPDYKANRPKIPEMLLPQLPLV 98
            + A ++D  A   RNE                      Y  YKANR + P  L+ Q P +
Sbjct: 61   YLAAVYDVGAPLLRNEQAKQMKDVQKFNIKTQEFETIEYGGYKANRAETPPDLIQQQPYI 120

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            R A +AF IP +  +GFEADD+I T +      G  V ++S+DKD+MQLV+    + + +
Sbjct: 121  RRALEAFRIPILFYEGFEADDVIGTLSCQLSALGHHVYVVSSDKDMMQLVNEDVSILNPM 180

Query: 159  KEEKI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
            K+  I D   V    G+PP ++V + AL GD+IDNIPG PGIG K +  L+Q++G +E  
Sbjct: 181  KDNLILDPAGVENVLGVPPARVVDVMALRGDAIDNIPGAPGIGDKGSVELIQQFGTVEGA 240

Query: 218  LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
            L  A+ +K+K  RE++    +   LS++LV + T VPI   L+H+  +  +     +   
Sbjct: 241  LDRAAEVKKKTYRESLQNNRDNILLSKELVTIHTAVPIEFSLDHMRTQPVDNAACRALFT 300

Query: 278  ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
             LEFT ++  +A   D             +  +    A E  +        S  ++   +
Sbjct: 301  ELEFTTMLKELAPDVDATPVTYNIKATADDLAKLLAEAREPSLAARDLEARSSTANQLPR 360

Query: 338  TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
               I   +T Q +  E     S      +S  +   T         L      +      
Sbjct: 361  GLAIALAETTQAIAEEVAADPSASAEVEESEPEPPQTMS-------LFGADEGAGD-RAQ 412

Query: 398  TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
               A  S+   +A+S    +D        +    ++  S D+ G           +++  
Sbjct: 413  GSGASSSEL--LALSPEPSQDPACRLGLAVTAGHAIEISLDTPG-----------IREAL 459

Query: 458  ENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIA----QKW 512
             +    K  H++K     L  + I++ G   D+ML SY+L+   SSH +  +A     + 
Sbjct: 460  ADPALPKQVHDLKAVLRALQPHDITLAGPITDVMLQSYLLNPTHSSHTLIDLAARTTSRA 519

Query: 513  LSYTRKEILKSRKSSIPIDKISD--------SQVQE----HAIENSNVILQLW----LLL 556
            L++   +   +    +P    +          Q+ E    H I   +  L       +L 
Sbjct: 520  LTHQPTKDNPNDPKRLPEAAAAIARLAVTLGEQLAEVPTTHVIPKDDPALGGAITTEMLF 579

Query: 557  RPKLIVEK----------------------------LLHVYERLDKPMIDVVSQMEITGI 588
              K  VE                             L  VYE+LD P++ V+ QME TG+
Sbjct: 580  ADKAQVEGARAQGAASASSGPLALNPEASPLNEHSTLAEVYEQLDLPLVSVLLQMEQTGV 639

Query: 589  QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++D +LL+++S+ ++  +  L E IY  SG +FN++SPKQLGD+LF K+  P   K   G
Sbjct: 640  RVDSNLLREMSSRLAVTIDDLAERIYASSGHRFNINSPKQLGDVLFNKMDLPKPMKHGKG 699

Query: 649  QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            +  +TAQD+ +     + +   +LE+RQL K+KSTY D LP+  +    R+HT ++   T
Sbjct: 700  KVISTAQDILEDLAQHHEVPAIVLEYRQLQKLKSTYLDQLPSLTD-VNGRIHTTFNQVGT 758

Query: 709  MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
             TGRL+S+ PNLQNIPI+T +G++IR AFI+ P   L+SADYSQIELR++AH ++   L 
Sbjct: 759  ATGRLSSINPNLQNIPIRTAVGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLL 818

Query: 769  QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
              +    DIH + AAE+F V+   +  + R  AK +NF I+YGISPF LA QL I +  A
Sbjct: 819  DAYRTGKDIHTLTAAEVFEVDAATMDKETRARAKAVNFGIVYGISPFGLAAQLGIDQKVA 878

Query: 829  ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
              YI+RYF R+ G+  +IE+T   VR++  V+T FGR     +I S   + R   ER A+
Sbjct: 879  KAYIERYFDRYKGVATFIEQTLETVRRDQAVKTAFGRVRPIPDIQSRNPNQRGFAERTAV 938

Query: 889  NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
            N P+QG+AAD+ + AM+ +  ++    L + M LQ+HDEL+F+V  EE     +++   M
Sbjct: 939  NTPLQGTAADLIKIAMLRIDAAIRTRNLRSLMTLQVHDELLFDVVPEEADEMQELVKTEM 998

Query: 949  EKACLPKINLRVPLKVNIKVSNNWQE 974
            E A        VP+   + + +NW++
Sbjct: 999  ESAA----EFSVPIVAEVGLGDNWRD 1020


>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
 gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
          Length = 906

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/981 (28%), Positives = 458/981 (46%), Gaps = 99/981 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +   L L+DG S  YRAF+A P+ +    DG P NA+ GF +ML  +L++ +     +H 
Sbjct: 17  EGGRLLLLDGHSLAYRAFFALPVENFSTTDGQPTNAVYGFTSMLINVLRDEQ----PTHV 72

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    TFR+E Y DYKA R K P+    Q+ L+     A  IP + + G+EADDII
Sbjct: 73  AVAFDRSEPTFRHEQYADYKAGRAKAPDEFRSQVSLIFEVLDALRIPRLSVPGYEADDII 132

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPE 177
           AT    A  +G    +++ D+D  QLV+    +   V+      + D   V +K+G+PPE
Sbjct: 133 ATLASQASAQGMQTLVVTGDRDAFQLVNEHVTVLYPVRGVSELVRYDPAKVAEKYGVPPE 192

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +   L AL G++ DN+PG+PG+G KTAA  L +YG+L+                 ++  A
Sbjct: 193 RYRELAALVGETSDNLPGVPGVGPKTAAKWLTQYGDLDG----------------LVRNA 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +                         L+   G  L   L  +     IN++      +  
Sbjct: 237 DK------------------------LKGKAGAALREHLPQVLRNHQINKLDCAVPLEVG 272

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +  +   +  E             T   T QF  L ++     S   P+      ++ 
Sbjct: 273 PAQLRLGQWDREE-----------IHTLFDTLQFRVLRERLYATLSAVEPEAEEGFAVEL 321

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                         +    +  W+ +                     + + +A++    +
Sbjct: 322 ------------TRLEPGALAAWLAEHAG---------------RAGERVGLAVTGRWGR 354

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    +          +        +  L+   ++  + H  K  H+ K   L L 
Sbjct: 355 GTGEVDALAVATASGAAVYVEPAELGEADERALA---EWLADPHRPKAIHDAKGPMLALA 411

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G+++ G   D  L +Y+   G+ + D+  +  ++L    +E  +     + ID I+D 
Sbjct: 412 ARGMTLAGVTSDTALAAYLALPGQRTFDLGDLVLRYLHKELREHAEPG-GQLTIDGIADD 470

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
                    +  +L+L   L   L       +   ++ P+  V++ ME  GI +D D   
Sbjct: 471 DAARELAVRARAVLELAEALDRDLERRGAARLLHEVELPLTGVLAAMERAGIAVDVDHFI 530

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q+SA +       E+  +   G +FNL SPKQ+  +LF +L  P   +TKTG    +   
Sbjct: 531 QLSASLGGQAKDTEQQAHAAVGHEFNLGSPKQVQQVLFEELGLPKTKRTKTGYTTDSEAL 590

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  D+P++++IL WR+++K+K +  DSL     +   R+HT ++     TGRL+S 
Sbjct: 591 NSLRAKSDHPVLEHILRWREVAKLK-SIVDSLIPMAAEDG-RIHTTFNQMVAATGRLSST 648

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIPI+T  G++IR  F+       L++ADYSQIELRI+AH++    L + F +  
Sbjct: 649 DPNLQNIPIRTAEGRQIREGFVVGEGYECLLTADYSQIELRIMAHLSGDEALIEAFTSGA 708

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D H + A+ +FG+  E++  ++R   K +N+ + YG+SPF LA+QL I   EA   ++ Y
Sbjct: 709 DFHTITASRVFGLPPEQIDGELRARIKAMNYGLAYGLSPFGLASQLGITPDEARVLMEEY 768

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F +F G+ +Y++      RQ+GY ETI GRR +  ++ S     R + ER A+NAPIQGS
Sbjct: 769 FQQFGGVRDYLQGVVRRARQDGYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQGS 828

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + A + V ++L +  LA++MLLQ+HDELVFEV   E+    +++   M  A    
Sbjct: 829 AADIIKVASLRVDRALRERGLASRMLLQVHDELVFEVAPGELEELKELVREQMTGA---- 884

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             LR PL+V +     WQ+  
Sbjct: 885 YELRAPLEVAMGTGRTWQQAG 905


>gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10]
 gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10]
          Length = 878

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/982 (30%), Positives = 494/982 (50%), Gaps = 117/982 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML K+L+  +     +H  V 
Sbjct: 2   NKLVLIDGNSIAYRAFFALPLLNTDK-GVYTNAVYGFTTMLLKVLEEQK----PTHLMVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E + +YK  R K P  L  QLP++R   +AF I  +E+  +EADDII T 
Sbjct: 57  FDAGKSTFRHETFKEYKGKREKTPPELAEQLPVMRDLLKAFNIDHVELTNYEADDIIGTL 116

Query: 125 TYIAE-KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               + KE + V I + DKDL+QLV+  T ++ T K     +   ++ + +++G+ PE++
Sbjct: 117 ATQVKGKEDWDVHIYTGDKDLLQLVNGQTTVHLTKKGITNVDTYQVKDIDERYGLKPEQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GDS DNIPG+PG+G                          K   + + E+   
Sbjct: 177 IDMKGLMGDSSDNIPGVPGVGE-------------------------KTALKLLKEHGSV 211

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             + + L                  ++ +G +L   L+A E   L+++   T   +   +
Sbjct: 212 EEVYQHL------------------DEVSGKKLKEKLEANEEQALMSKQLATIFLEVP-L 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D+   E    A+ + + ++   ++       ++  K++ E  P           +
Sbjct: 253 EIKPDDLKRGEPDQAALSS-LFKELEFQSLLSRIGEEEEEKVDMEDLPVTRLSSDNPLEN 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           ++ ++                          +  +     +      I +AI+       
Sbjct: 312 KHLVSPS------------------------ALYVEMLEENYHQGSIIGVAIANETGIYY 347

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                 +  LT ++    KK+ E++       + K   + L   
Sbjct: 348 V-------------------EAEEALTSDV---FKKWAEDDQKEIYTFDAKRTVVALGWA 385

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPIDKIS 534
           GI +     DI + SY++D    SH+IA IA +              K +K +IP     
Sbjct: 386 GIDLSNTTFDIQMASYLIDPASGSHEIADIANRKNGIQVQTDEAVYGKGKKQAIP----E 441

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++ +H    +  IL L   L  +L   +   +++ L+ P+  ++ +ME  G+ +DQ  
Sbjct: 442 AEELSQHLGRKAAAILDLKKNLEQELRDNRQWELFQDLEMPLSVILGRMEANGVSVDQQE 501

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  ++++ L  LE+ IY+ +G+ FN++SPKQLG +LF  L  P   KTKTG   +T+
Sbjct: 502 LETIGKDLTERLAKLEQQIYEAAGQSFNINSPKQLGKVLFEDLGLPVLKKTKTGY--STS 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +   G++ +I +IL +RQL K+ STY + L   I+ +T ++HT ++ A T TGRL+
Sbjct: 560 ADVLEKLKGEHDVIDHILFYRQLGKLNSTYIEGLLKVIHPKTGKIHTIFNQAVTQTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP++ + G+KIRRAF+   P  KL +ADYSQIELR+LAHI+K   L   F+ 
Sbjct: 620 STEPNLQNIPVRLEEGRKIRRAFVPSKPGSKLFAADYSQIELRVLAHISKDENLISAFQE 679

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            +DIH   A+++FGV   +V+ +MRR AK +NF I+YGIS + L+  L I R +A  +I 
Sbjct: 680 GMDIHTKTASDVFGVKGNEVTAEMRRTAKAVNFGIVYGISDYGLSQNLGISRKKAQTFID 739

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF  +PG+  Y+E      R+ GYV T+  RR +  ++ S   + R+  ER A+N PIQ
Sbjct: 740 KYFESYPGVKTYMEDIVAEAREQGYVTTMLQRRRYLPDLTSRNFNQRSFAERTAMNTPIQ 799

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AM+ +   LE   L + MLLQ+HDEL+FEVPE+EI T  +++   ME    
Sbjct: 800 GSAADIIKKAMVDMATELERQNLKSVMLLQVHDELIFEVPEDEIETMEKLVKDVMES--- 856

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I L VPL  ++   + W + 
Sbjct: 857 -TIELNVPLITDMATGDTWYDA 877


>gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
 gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
          Length = 887

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/986 (32%), Positives = 501/986 (50%), Gaps = 116/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    EK GF  TI++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFAAKGEKVGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++  
Sbjct: 179 SEFIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRD 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A     L      +    P+                               T D D 
Sbjct: 239 KDKAF----LAKKLATIDRDSPV-------------------------------TIDIDD 263

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              EPV              + E  R    K +    L++  +    +   +   +E   
Sbjct: 264 VKREPV--------------DYEKLRQFYEKMNFRKFLAELNASGAGQDGAEVEKVE--- 306

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++N  +++    K     +  F +     +   +  +  ++   D+
Sbjct: 307 ------------YTVLNDDNVKDV--KATEKDTVEFYLEMLGANYHLADFVGFSLKINDK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         + V    D   ++         +K   E+E   K   ++K   +  
Sbjct: 353 --------------IYVSRDVDLLEEDN--------IKHILEDEKIKKNVFDLKRSMVGA 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR GI   G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    KS  IP D
Sbjct: 391 HRLGIHTHGLDYDMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++  H     N I  L   L  KL   +   +++ ++ P   V+++ME+ G++++
Sbjct: 451 ---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDALFDTIEIPTARVLARMEMNGMKVE 507

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  E +  L  LE+ IY  +GEKFNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 508 TSTLIQLQNEFAVKLKKLEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGY-- 565

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 566 STSVEVLDQLKTQSPIVSKILDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYLQTLTATG 624

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 625 RLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEA 684

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF +   ++V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 685 FKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQ 744

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I +Y+ K     R  GY ETI  RR +  +I++ K ++R   ER AIN
Sbjct: 745 EFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAIN 804

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 805 SPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQ 864

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 865 SA----VKLDVPLIADSGWGHNWYDA 886


>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
 gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
          Length = 939

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/981 (28%), Positives = 458/981 (46%), Gaps = 93/981 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  YRAF+A P  + R   G   NA+ GF +ML  LL++ +     +H AV 
Sbjct: 35  RLLLLDGHSLAYRAFFALPAENFRTGTGQTTNAVYGFTSMLINLLRDEQ----PTHLAVA 90

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y DYKANR   P+    Q+ L++    A  IP   ++G+EADDIIAT 
Sbjct: 91  FDVSRRTFRSERYADYKANRTTTPDDFRGQVDLIKEVLGALNIPVFAVEGYEADDIIATL 150

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +GF V I + D+D  QLV+    +    +      +ID   V  ++G+ PE+  
Sbjct: 151 TTQAEADGFQVLITTGDRDAFQLVTENVTVLYPKRGVSDLGRIDPAEVDNRYGLTPEQYP 210

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD  DN+P IPG+G KTAA  ++E+G+L  +      +K  K  + +       
Sbjct: 211 DFAALRGDPSDNLPSIPGVGEKTAAKWVREFGSLAELTDRVDEVKG-KAGDALRANLANV 269

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L+R+L  L  DV +                                             
Sbjct: 270 LLNRQLTELVRDVTLD------------------------------------------AS 287

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P  L++   +   +    +      ++   FS+L     +  S    Q            
Sbjct: 288 PADLEVRPWDRDAVHRLFDELEFRVLRERLFSTLQSAEPEAESGFEVQG----------- 336

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGS---ASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     +V    ++ W+      G     +F  +T  +         IA++  +  
Sbjct: 337 ---------TVVAPGSVRAWLDANARDGRRVGVAFSGVTGGIT--ERDFTGIALAAGEPS 385

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            +         + ++ +          LT +  + L ++  +    K  H++K     L 
Sbjct: 386 VEARADGALAGVPVAGY-----LDVRGLTPDDEAALGEWLADPAVPKASHDVKAVLHALR 440

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G ++ G   D  L +Y+   G+ S D+A +A ++L              + +    + 
Sbjct: 441 GRGWTLAGLTSDTALAAYLAKPGQRSFDLADLALRYLRRELAMEGAPADGQLSLLGGEEE 500

Query: 537 QVQEHA---IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             + HA   +  ++ + +L   L  +L  ++   +   L++P+  V++ +E  GI +D+ 
Sbjct: 501 ADRAHADAEMVAASAVAELADALGAELAEKEQNGLLLELEQPLAFVLADLEAAGIAVDRA 560

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+ + AE +  +    ++ Y + G++ NL SPKQL  +LF +L  P   +TKTG     
Sbjct: 561 NLESLEAEFAGQVAQAAQDAYAVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 620

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                      +  ++++L  R  +++K T  D L   I     R+HT YS     TGRL
Sbjct: 621 DALAGLFEQTGHEFLQHLLLHRDATRLKVT-VDGLLKSIAADG-RIHTTYSQTIAATGRL 678

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQN+PI+T  G++IR AF+      +L++ADYSQIE+RI+AH+++   L + F 
Sbjct: 679 SSTEPNLQNVPIRTAAGRRIRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFR 738

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D H   A+++FGV+   VSP+ R   K +N+ + YG+S F L+ QLRI   EA   +
Sbjct: 739 SQRDFHSETASKVFGVDAADVSPEQRAKIKAMNYGLAYGLSAFGLSGQLRISTEEARGLM 798

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  F G+ +Y+    +  R++GY  T+ GRR +  ++ S     R + ER A+NAPI
Sbjct: 799 DDYFETFGGVRDYLRSIVDVARKDGYTATMLGRRRYLPDLTSDNRQRREMAERMALNAPI 858

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM+ VH +L+   L ++MLLQ+HDELV EV + E      ++   M  A 
Sbjct: 859 QGSAADIIKVAMLRVHAALQAEGLRSRMLLQVHDELVLEVADGERDAVDALVRREMAAA- 917

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
                L VPL+V++    +W 
Sbjct: 918 ---HELSVPLEVSVGYGASWD 935


>gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917]
 gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917]
          Length = 996

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1030 (28%), Positives = 483/1030 (46%), Gaps = 97/1030 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           ++  L L+DG S  +R+FYA            DG P +   GF   L     +  K    
Sbjct: 6   EKPLLLLIDGHSLAFRSFYAFSKGGEGGLATKDGRPTSVTYGFLKALL----DHCKGLRP 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI-PAIEIQGFEA 117
           S  A+ FD    TFR+E   +YKA+R   PE+    L  ++   +     P     G+EA
Sbjct: 62  SGVAIAFDTAEPTFRHEADANYKAHRDVAPEVFFQDLEQLQQILRQQLRLPLCLAPGYEA 121

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIEH 167
           DD++ T    A  +G+ V I+S D+DL QLV                        I+   
Sbjct: 122 DDVLGTLANRAANDGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKNSGPSLINEAG 181

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ- 226
           V  K G+ P  +V L+ALTGDS DNIPG+ G+G KTA  LL+E G+L+ +    + ++  
Sbjct: 182 VEAKLGVTPASVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENGDLDGVYQALAEVEAE 241

Query: 227 ----------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                        +  +    + A LSRKL  +  D+P+      L L   +   L + L
Sbjct: 242 GPKASRGAIKGALKGKLSADRDNAYLSRKLAEILVDIPLPEEP-DLDLGTVDADGLSARL 300

Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
           + LE   L+ ++                 + T  + G+A    +         Q +    
Sbjct: 301 QELELNSLVRQIPAF--------------VATFSSGGLAANGHLLGQVGQVQVQDTGTEG 346

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI----GSASF 392
            T  + +  T   L L              +   I     ++  + +L          + 
Sbjct: 347 ATEGVVAPATSDSLPL-------------LTPQLIRTEHQLKALIDRLLLCRDPAQPVAL 393

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG-KNTLTKEILS 451
              T  ++ F ++ + + +    + DD ++ +       +  + +DS+  +      +L+
Sbjct: 394 DTETSDLNPFKAQLVGVGVCWGPELDDLAY-IPVGHRPSAEPSLEDSSAIQQLPLDTVLA 452

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ 510
            L  +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+    H + ++A+
Sbjct: 453 QLAPWLASAEHPKALQNAKYDRLILLRHGLPLGGVVMDTLLADYLRDAAA-KHGLDAMAE 511

Query: 511 KWLSYTRK---EILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--E 563
           +          +++   K        ++  +Q   +   + ++  +L L LR +L     
Sbjct: 512 RDYGIQPTLFSDLVGKAKDGKASCFAEVEINQAALYCGMDVHLTRRLALDLRQQLAAMGP 571

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           +LL + ++++ P+  V++ ME TGI+ID   L  +S E+++ L  LE      +G +FNL
Sbjct: 572 RLLPLLDQVELPLEPVLALMEATGIRIDHPYLAALSTEMAQTLERLETEAKQAAGMEFNL 631

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG++LF  L        +T    +T   + +    D+P++  +LE R LSK+KST
Sbjct: 632 ASPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLEKLEQDHPVVPLVLEHRTLSKLKST 691

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+     
Sbjct: 692 YVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQAGW 751

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           +L+SADYSQIELRIL H++    L Q + +  D+H + A  +  +  + V+   RR  KT
Sbjct: 752 QLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKKAVTADERRLGKT 809

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           INF +IYG+   R A +  + +++A +++ +Y  R+P +  ++E  +      GYVETI 
Sbjct: 810 INFGVIYGMGAQRFARETGVSQAQAKEFLSKYKERYPKVFAFLELQERLALSRGYVETIL 869

Query: 864 GRRIHYDEIN------------------SPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           GRR  +                      + +  +     RAA NAPIQGS+ADI + AMI
Sbjct: 870 GRRRPFHFDRNGLGRLLGKDPLEIDLEVARRGGMEAQQLRAAANAPIQGSSADIIKLAMI 929

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            +  +LE   L  ++LLQ+HDELV EV    +    Q++V +ME+A    I L VPL V 
Sbjct: 930 QLQAALEQQSLPARLLLQVHDELVLEVDPTALERVRQLVVTTMEQA----IQLSVPLVVE 985

Query: 966 IKVSNNWQEE 975
             V  NW E 
Sbjct: 986 TGVGANWMEA 995


>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
 gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
          Length = 903

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/981 (31%), Positives = 503/981 (51%), Gaps = 87/981 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   + L DG++ ++RA++  P L+ +  G  V A  GF ++L K+L + + +     
Sbjct: 1   MSK-PVIVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPD----C 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           +A+ FD    TFR+E++ DYKA RP +P+ L+ QL  VR    AF +P  E  GFEADD+
Sbjct: 56  YAISFDKKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT------VKEEKIDIEHVIKKWGI 174
           + T    A  EG  V I S D D MQLVSP   +               D   V  K+G+
Sbjct: 116 LGTLATRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAAVRAKYGL 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE +   +AL GD  DNIPG+PGIG KTA  L++EYG +E+I  N  +I     ++ + 
Sbjct: 176 GPEHVADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKKL- 234

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
             A+ A    ++                                       +++ TT  C
Sbjct: 235 --ADNA----EVARQ------------------------------------SKILTTIVC 252

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D      + LD +  E +      +   D   +  +F  L ++     +           
Sbjct: 253 D------LPLDFSIQECRSEHYNRQKVVD-LFRELEFFRLINRLPGGENPGGGMTDMFNT 305

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            QK+    I       + N +++   V++       +  +   + +A  ++  A+AIS  
Sbjct: 306 PQKVETRYI-------VANGQNLDSIVKRFTETKELALAVSGTSEEAIDARLTALAISPA 358

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           + +             +S      ++       E    L     N++  K  HN KY   
Sbjct: 359 EGEAYF----------ISAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTAHNAKYLMN 408

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +L   G  ++G + D ML +++L  G  +  I  +  +       ++      +      
Sbjct: 409 LLASAGQEIQGLDFDTMLSAHLL--GEKNLGIKDLVFEHFGVEIADVENILTQNGKKKSF 466

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S S++ E A   ++   +L  L   +L   KL+ ++  ++ P++ ++  ME +GI +D D
Sbjct: 467 SASELSEAAQLVADYTFRLKGLFAAQLAETKLIDLFVNVEMPLVPILLGMERSGIMLDTD 526

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LLK ++ ++   +  LEE IY  +G  FN+ SP+QLG ILF +LK P   KTKTG + T 
Sbjct: 527 LLKGMAEKVGGQIFKLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YSTG 585

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+ L+++  G++ I+  ILE+R L K+KSTY D+LP  +N  T+R+HT ++   T TGRL
Sbjct: 586 AEVLDELK-GEHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRL 644

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP++ ++G++IRRAFI+P    +++ DYSQI+LR+LAH++    L + F  
Sbjct: 645 SSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLK 704

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA +  +   +V+ + RR AKT+NF +IYG+S + L     +  +EA  +IK
Sbjct: 705 DQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIK 764

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF ++P +  Y  + K+  R NGYVET+ GRR +  EINSP   +R   ER AIN P+Q
Sbjct: 765 AYFEKYPRVAIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQ 824

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G++ADI + AM+ + + L++ KL +++LLQ+HDEL+FEVP+ E+   S +++ +M  A  
Sbjct: 825 GTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDELIFEVPDAELKRMSALLMETMSGA-- 882

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             +   +PLKV +K   NW +
Sbjct: 883 --VTFEIPLKVELKSGANWGD 901


>gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603]
 gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603]
          Length = 876

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/982 (31%), Positives = 478/982 (48%), Gaps = 119/982 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEQPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SNEADKAGFETIIITGDRDLTQLATDHVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  N + +  KK         E 
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFNTVEGVYDNINSVSGKKL-------KEK 229

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+       D  ++  L  + +E                                  
Sbjct: 230 LENSKD------DALMSKDLATINVESP-------------------------------- 251

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
               +++N  + K  A   E ++    K  +F+ L  +     + Q  +    E      
Sbjct: 252 ----IEVNLEDTKMEADIDETEKIELFKKLEFNQLLAEIDSFEATQEQKDKVFEIESDFD 307

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               N+     I                         +  +      +   + T +    
Sbjct: 308 HINFNDLDEATIH---------------------FELEDSNYLKDNILKFGLYTGEHHVV 346

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +      F D                      L  + EN +  K  ++ K   +V HR 
Sbjct: 347 INADEIKQFSD----------------------LVNWLENPNTAKTVYDAKKTYVVAHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKIS 534
            I ++    D+ML SY++D  R+  D+ S+   +  +  ++      K +K  IP D+I 
Sbjct: 385 DIDIQNIQFDVMLSSYIIDPSRTIDDVNSVVSLYGQHYVQDNVAIYGKGKKHHIPEDEI- 443

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + +H       +      ++ +L       +   L+ P+ +++S+ME  GI  D + 
Sbjct: 444 ---LNKHVASIIEAVSASKSEMQNQLKEYNQESLLADLELPLAEILSEMEEIGIYTDVND 500

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  EI + L  L +NI++ +GE+FN++SPKQLG +LF  L+ P   KTKTG   +TA
Sbjct: 501 LQHMEKEIQEKLDVLIKNIHEAAGEEFNINSPKQLGVVLFETLELPVIKKTKTGY--STA 558

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +   G +PII  ILE+RQLSK++STY + L   I++   R+HT ++     TGRL+
Sbjct: 559 VDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISEDN-RIHTRFNQTLAQTGRLS 617

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S++PNLQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N
Sbjct: 618 SVDPNLQNIPIRLEEGRKIRKAFKPTSTDSVILSADYSQIELRVLAHITQDESMKEAFIN 677

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I 
Sbjct: 678 GHDIHTATAMKVFDVGADEVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFID 737

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            Y   FPG+ +Y+       +   +VET+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 738 DYLDSFPGVKQYMSDIVKDAKAQDFVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQ 797

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+  +K ++  K   K+LLQ+HDEL+FEVP++E+ + SQ +   ME A  
Sbjct: 798 GSAADIIKLAMVQFNKEVQHTKYHAKLLLQVHDELIFEVPKDEVESFSQFVEDIMESA-- 855

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + L VPLKV       W + 
Sbjct: 856 --LELDVPLKVESSYGATWYDA 875


>gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
 gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
          Length = 934

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/999 (30%), Positives = 499/999 (49%), Gaps = 94/999 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             +  ++L+D  +F++RA++A           G+P  A   F NM+ KL    R++    
Sbjct: 4   STKPPVYLLDTMAFVFRAYHAMQRSRPMSTRTGIPTAATYVFVNMINKL----RRDFAPH 59

Query: 60  HFAVIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLV 98
           + A I++  A   RNE+                     Y  YKANR + P  L  Q P +
Sbjct: 60  YLAAIYEGGAPVHRNELAAEMKTMRKFNIKTQQFDEVDYLGYKANRSETPPDLEQQQPYI 119

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           R A +AF IP +  +G+EADD+I T +    ++G  V ++S+DKD+MQLV+    + + +
Sbjct: 120 RRALEAFRIPILSYEGYEADDVIGTLSCRLAEQGHHVYVVSSDKDMMQLVNENVSILNPM 179

Query: 159 KEEKI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
           K+  I D   V +  G+PP ++V + AL GDSIDNIPG PGIG K +  L+Q +G++EN 
Sbjct: 180 KDNLILDPAKVEEVLGVPPRQVVDVMALRGDSIDNIPGAPGIGDKGSVELIQAFGSVENA 239

Query: 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           L  A+ +K+K +RE++    E   LS++L  +  ++P+   LE +   +     L +   
Sbjct: 240 LDKAADVKKKTQRESLQNNREMVLLSKELATIHCNLPMEFSLEDMTTTEPEPVLLRALFS 299

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
            LEFT L+  +A           P   +      K  A E        I T   S+ S Q
Sbjct: 300 ELEFTTLLKELAP----------PATAEKANLITKPNAEE--------ISTLLQSARSRQ 341

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
              I  +++   L  E     +     +    +          +         +      
Sbjct: 342 NLTIFLQESEAALAAE---ICADDSSESTEGEEPEPPPTENMSLFGAPEPEIPAITAAEP 398

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           T +   +                +     + +DL+   +              + ++   
Sbjct: 399 TGNTLMAGL-------------AADDNTALLLDLNAPEA--------------TAIRDAL 431

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
           ++    K  H++K       + G+ +     D+ML SY+++    SH +A +A +     
Sbjct: 432 KDPALPKTTHDLKSLLHTAGQRGLEIANVAHDVMLYSYLINPTHGSHKLADVAAR----M 487

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            + I    K+  P              E ++ I +L   LR +    +LL  YE +D P+
Sbjct: 488 GQSITPLVKNQTP--------PATALPEAASAIHRLAPALRIQAEEGELLKPYEEIDLPL 539

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+ +ME  G +ID  +L+ +S++++ ++ +L E IY +SG +FN++SPKQLGD+LF K
Sbjct: 540 VPVLLRMEQVGCRIDSQVLRDMSSKLAVDMDALAERIYAMSGHRFNINSPKQLGDVLFNK 599

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           +  P   K   G+  +TAQD+ +     +     +LE+RQL+K++S Y + LP   ++  
Sbjct: 600 MDLPKPMKYGKGKVVSTAQDVLEELAAHHEAPALVLEYRQLAKLRSNYTEQLPQLADREG 659

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            RVHT ++   T TGRL+S  PNLQNIP +T LG++IR AFI      L+SADYSQIELR
Sbjct: 660 -RVHTTFNQVGTATGRLSSTNPNLQNIPTRTALGREIRAAFIPAEGNVLLSADYSQIELR 718

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ++AH ++   L   +    DIH + AAE+F V+ E +  + R  AK +NF I+YGISPF 
Sbjct: 719 LMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIVYGISPFG 778

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL IP+ EA  YI+RY  R+ G+  +IE+T +  R  G V T+FGR     +I S  
Sbjct: 779 LAAQLGIPQGEAKLYIERYRERYAGVTAFIERTISDTRSTGKVSTLFGRTRPIPDIGSRN 838

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            + R   ER A+N P+QG+AAD+ + AM+ +  +L + KLAT+M LQ+HDEL+F+ P  E
Sbjct: 839 PNQRGFAERTAVNTPLQGTAADMIKIAMLKIDAALTERKLATRMTLQVHDELLFDAPVGE 898

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
               + ++   ME      ++L +P+   +    NW++ 
Sbjct: 899 TEEVAALVKLEMEGV----VSLSIPIVAEVGKGPNWRDA 933


>gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
 gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
          Length = 873

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/979 (30%), Positives = 475/979 (48%), Gaps = 125/979 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + ++DG+S   R FYA P+++   DG P N + GF  ML +LL   + +    ++ V F
Sbjct: 3   KILILDGNSLANRTFYALPMMTTA-DGKPTNVLHGFMTMLLRLLLEQKPD----YWVVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T R E Y DYKA R + P+ L PQ   ++    AF +P +E  G+EADDIIAT T
Sbjct: 58  DKTKATVRIEQYADYKAQRKETPDALKPQFDFLKELLTAFAMPILECPGYEADDIIATVT 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE+  +   I + D+D +QL+SP T +Y T K     +  D   + +K+ + P +++ 
Sbjct: 118 SLAEQREWETQIYTGDRDALQLISPRTTVYLTRKGITEVDAYDEGALYEKYQLRPAQIID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD+ DNIPG+PG+G KTA  LL EYG++EN+L N  +I  KK +EN+    + A 
Sbjct: 178 LKGLMGDASDNIPGVPGVGEKTALKLLWEYGSVENVLDNIDKISGKKLQENLRNNTDKAL 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+KL  +  D+P+ I          +  RL+   +  +       +        A I  
Sbjct: 238 LSKKLATMLYDIPLEI----------DLDRLV--YRRPDEKTFTAALDKYVLKSVARI-- 283

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                   E+ G   E                          + TP++  L+        
Sbjct: 284 ------WHEHHGAGEE-------------------------GKDTPREEVLKPWP----- 307

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETI----GSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     +     ++W+ +        G+          +   ++  A  I+   + 
Sbjct: 308 ----------LRELTGEEWLARFPQWQADQGTLVLTCANTGGNPHWARITAWGIAVGGES 357

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              ++                         E+     +  E+    K   + K    +L 
Sbjct: 358 FILNWTDAAP--------------------EVRLAFSQLLEDSEVPKQVADSKVLYSLLL 397

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
              I +RG   DI L +Y+++  R+  +   + +++                    I  +
Sbjct: 398 NEEIILRGVSLDIGLAAYLINPTRNKFEPLELVKEY--------------------IPGA 437

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               +  E ++ + Q+    +  L    L  +   +++P+  ++++ME  GI +D   L+
Sbjct: 438 GEFANLAEEASALAQVADSYKETLEELGLSALLHEMEEPLSPILAEMEKQGIAVDVQRLQ 497

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +   E++  L  LE+ IY  +GE FN++SP+QLG ILF KL  P   KTKTG   +T  D
Sbjct: 498 EFGRELTVELQRLEQEIYADAGETFNINSPQQLGHILFEKLGLPPMKKTKTGY--STDAD 555

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
             +     + I++ +L++RQLSK+ STY + L   I++   RVHT +    T TGRL+S 
Sbjct: 556 TLEELRDQHSIVERVLDYRQLSKLMSTYVNGLLAQIHEG--RVHTTFQQTVTATGRLSST 613

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+ +LG+ +R+ F        L+SADYSQIELRILAH ++   L + F  + 
Sbjct: 614 EPNLQNIPIRLELGRLLRKVFTPTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQ 673

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H   A+E+FG+ + +V+  MRR AK +NF +IYG++ F L   L +PR EA  YI+ Y
Sbjct: 674 DVHTRTASEVFGIPMAEVTKDMRRKAKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETY 733

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           FHR+ G+  Y+E+     ++ G V T+  R     E+  P    R   ER A+N PIQG+
Sbjct: 734 FHRYEGVKRYLEEIVVKAKEEGQVRTLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGT 793

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V ++L+       +LLQ+HDELV EV  E++   ++++   ME A    
Sbjct: 794 AADIMKLAMLGVAEALK--PYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESA---- 847

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL  + K   NW +
Sbjct: 848 FPLSVPLIADCKTGPNWYD 866


>gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
 gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
          Length = 878

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/977 (32%), Positives = 485/977 (49%), Gaps = 124/977 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DG+S ++RA++A P L+    GLP NA+ GF NML +++   + +      AV F
Sbjct: 3   KFLVIDGNSLLHRAYHAIPPLTT-SGGLPTNAVYGFTNMLLRVITEEQPDM----IAVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D   +TFR++ + +YKA RP +P+ L PQLP+++    A  I   E +G+EADDII T  
Sbjct: 58  DKGRITFRHDTFQEYKAQRPPMPDDLRPQLPILKDVLGALRISIHEAEGYEADDIIGTLV 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +A + G    I++ DKD++QLV P T    T K     E+ D+    +++GI P ++  
Sbjct: 118 RVASENGHDSLILTGDKDILQLVGPHTQALLTRKGITELERYDMAKTRERFGITPAQLAD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+PGIG K AA LL ++G L                E++LE  +   
Sbjct: 178 LKGLVGDPSDNIPGVPGIGPKIAARLLADHGRL----------------ESVLENLDGL- 220

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                       PR+   L+       +++   T D     +  
Sbjct: 221 ---------------------------PPRVRQQLENFGDQARMSKKLATIDTGVPGLGK 253

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ-TSKINSEQTPQKLFLERLQKLSQ 360
             L +    +K   +E            +F SL  + T    +   P    +E      +
Sbjct: 254 EDLKVWPGPDKPALLE-------IFNKLEFRSLVRRITEAPVTGGVPAGKPVEAFSPDYR 306

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                D    +++       V      G               S   A+  S        
Sbjct: 307 LLDGPDHLETLLDQARRAGAVAVAYARG--------------RSGIEALGFSVEAGN--- 349

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY- 479
                   + L                EIL+ +++ F +    K  HN K     L    
Sbjct: 350 ------YLLPLGAADL-----------EILAGVRRLFADAAVAKHMHNAKD---FLRWAP 389

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
              +     D M+ +Y+++   ++  +  +  ++L+                  + D   
Sbjct: 390 DFDLANICFDSMVAAYLVNPLAANQQLEDVVHQYLNLVL---------------VPDGPA 434

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                  ++ I +L+ +LR +L   +L ++++R++ P+  V++ ME+ G+ +D+D L+ +
Sbjct: 435 AP--ATAADCIRRLYPVLRAELRGYELDYLFDRVELPLTRVLADMELAGVAVDRDQLEAL 492

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E       L   I  L+GE FNL+SP+QLG ILF KL  P+G KTKTG + T A  L 
Sbjct: 493 SEEFGTRAGELAARICTLAGEDFNLNSPRQLGYILFEKLGLPAGKKTKTG-YSTDAGVLL 551

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +    + I   +LE+RQL K+K+TYAD L   ++  T R+HT      T TGRL+S EP
Sbjct: 552 DL-AEKHEIAALLLEYRQLIKLKTTYADGLAALVDPATGRLHTTLHQTVTNTGRLSSAEP 610

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+ + G++IR+ FI   P + L++ADYSQIELRILAH++    L   F +  DI
Sbjct: 611 NLQNIPIRMEEGRRIRKVFIPRDPARVLLTADYSQIELRILAHLSGDPALITAFRDEQDI 670

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AAE+FGV +E V+P+MR  AK +NF IIYGIS F LA  L++ R+EA +YI+RYF 
Sbjct: 671 HARTAAEVFGVPLEMVTPEMRSRAKAVNFGIIYGISDFGLARDLKVTRAEAREYIQRYFA 730

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R PG+ EYI+      R+ GYV T   RR    E+ S   ++R+  ERAA+N PIQG+AA
Sbjct: 731 RLPGVKEYIDTAIRSARERGYVTTALNRRRPLPELFSANHTVRSFGERAAVNTPIQGTAA 790

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ +H  + +  L T M+LQ+HDEL+F+VP EE+ T + ++   ME      + 
Sbjct: 791 DIIKLAMVKIHARMRERNLKTLMILQVHDELLFDVPAEEVCTVAPLVKAEMETV----LP 846

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL V++K+ +NW E
Sbjct: 847 LNVPLTVDLKIGHNWYE 863


>gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 887

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/989 (32%), Positives = 507/989 (51%), Gaps = 117/989 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  E  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+  
Sbjct: 1   MADE-KLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVD 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EA
Sbjct: 56  PTHVLVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173
           DDII T+    EK GF  TI++ D+DL QL S  T +  T     K E    EH+ +  G
Sbjct: 116 DDIIGTFAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSKLEAYTPEHMKEVNG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E +
Sbjct: 176 VTPSEFIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERL 235

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +   E                                              + +   T D
Sbjct: 236 IRDKE-------------------------------------------KAFLAKKLATID 252

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            D+    PV LDI+  + + +  E        +   +F  L+D  +    + + +   +E
Sbjct: 253 RDS----PVTLDIDDIKRQPVDYEKLRQFYEKMNFRKF--LADLNASGAGQDSTEVEKVE 306

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                            ++N  +++    K     +  F +     +   +  +  ++  
Sbjct: 307 ---------------YIVLNDDNVKDV--KATEADTIEFYLEMLGANYHLAPFVGFSLKI 349

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            D+              + V    +   ++         +K   E+E   K   ++K   
Sbjct: 350 NDK--------------IYVSRDVELLEEDN--------IKHILEDEKIKKNVFDLKRTM 387

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SI 528
           +  HR GI   G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    KS  I
Sbjct: 388 VAAHRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHI 447

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D ++  H     N I  L   L  KL   +   +++ ++ P   V+++ME+ G+
Sbjct: 448 PDD---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDALFDTIEIPTARVLARMEMNGM 504

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +++   L Q+  E +  L  LE+ IY  +GEKFNL+SPKQLG ILF KL  P   KTKTG
Sbjct: 505 KVEASTLIQLQNEFAVKLKKLEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTG 564

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ ++       +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T
Sbjct: 565 Y--STSVEVLDQLKTQSPIVSKILDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYLQTLT 621

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    +
Sbjct: 622 ATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNM 681

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+   DIH   A +IF +   ++V+P MRRHAK +NF I+YGIS + L+  L I R 
Sbjct: 682 QEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRK 741

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            A ++I  YF ++P I +Y+ K     R  GY ETI  RR +  +I++ K ++R   ER 
Sbjct: 742 RAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERT 801

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP++E+ T  +I+  
Sbjct: 802 AINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPE 861

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    + L VPL  +    +NW + 
Sbjct: 862 VMQSA----VKLDVPLIADSGWGHNWYDA 886


>gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 875

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/987 (31%), Positives = 495/987 (50%), Gaps = 125/987 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++  L L+DG+S  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H
Sbjct: 1   MTQK--LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAIYGFTTMLTRILEEEK----PTH 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + +YK  R K P  L  Q P +R    A+GI   E+  +EADDI
Sbjct: 54  LLVAFDAGKTTFRHKTFTEYKGGRQKTPPELSEQFPFIRELLDAYGIKRYELPDYEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AEK+G AV +IS DKDL+QLVS    +  T K     +      + +K+GI  
Sbjct: 114 IGTLSKQAEKKGMAVKVISGDKDLLQLVSEHVTVDITRKGITDVDSYTPAAIDEKYGITA 173

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GDS DN   IPG                         + +K   + + E+
Sbjct: 174 AQIIDMKGLMGDSSDN---IPG----------------------VPGVGEKTALKLLKEF 208

Query: 237 A--ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E    S                    ++  +G +L   L+    + ++++   T  C
Sbjct: 209 ETVENVLKS--------------------IDQVSGKKLKEKLEDNRESAIMSKKLATIYC 248

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +A       L+++  + K    E+        +    S L+        E   ++L  E 
Sbjct: 249 EAP------LEVSVEDAKYDGFESSKVISLFKELGFNSLLAKFGESAEEEADFEELTFEI 302

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            Q++    + +++   +   ++                       +  H++ +   IS  
Sbjct: 303 AQEVHDDMLTSEAALIVEGYEE-----------------------NYHHNQLLGFGISNK 339

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +            FID     S              S  K + E+    K   N K   +
Sbjct: 340 NG---------HYFIDKDTALSS-------------SKFKAWLEDGRVKKTVFNGKRTIV 377

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIP 529
            L   G  ++G   D+M+ SY+L+   ++ D+A+IA+   +      E    K  K SI 
Sbjct: 378 SLKWAGHEIKGIEHDVMIASYILNPAEANDDLATIAKLKGYHQVQSDEAVYGKGAKRSIA 437

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
                 +Q+ EH I  +  +  L  +L  +L+  +   ++E+L+ P+  V++ ME  G++
Sbjct: 438 ----EAAQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFEKLEMPLAIVLADMEYQGVK 493

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID+  L ++  ++ + L  +E  IY+ +G++FN++SPKQLG +LF K++ P   KTKTG 
Sbjct: 494 IDRARLDEMGEDLREQLEKIEAKIYEYAGQEFNINSPKQLGVVLFEKMQLPVIKKTKTGY 553

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +T+ D+ +     + II  IL++RQL K++STY + L   I++   +VHT ++   T 
Sbjct: 554 --STSADVLEQLASTHDIIPEILQYRQLGKLQSTYIEGLKKVIHESDGKVHTRFNQTLTQ 611

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PNLQNIPI+ + G+KIR AF+   P   + +ADYSQIELR+LAHIA    L 
Sbjct: 612 TGRLSSVDPNLQNIPIRLEEGKKIRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLI 671

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F++ LDIH   A ++F V  E+V+  MRR AK +NF I+YGIS + L+  L I R  A
Sbjct: 672 DAFKHDLDIHTKTAMDVFHVEREEVTSNMRRQAKAVNFGIVYGISDYGLSQSLGITRKAA 731

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           A +I+RY   FPG+ EY++      ++ GYV T+  RR +  EI S   ++R+  ER A+
Sbjct: 732 ATFIERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLHRRRYLPEITSRNFNLRSFAERTAM 791

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQG+AADI ++AMI + K L+D  L  K+LLQ+HDEL+FE PEEEI    +I+   M
Sbjct: 792 NTPIQGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKILEKIVPEVM 851

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E A    + L VPLKV+      W E 
Sbjct: 852 ENA----LELEVPLKVDYSYGKTWYEA 874


>gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 985

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/1027 (29%), Positives = 489/1027 (47%), Gaps = 110/1027 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R+FYA         +  +G P +   GF   L     ++ K        
Sbjct: 10  LLLVDGHSLAFRSFYAFSKGGEGGLQTKEGTPTSVTYGFLKSLL----DNCKLLSPEGVT 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFEADDII 121
           + FD    TFR++  P+YKANR   P++    L  ++   +    +P     G+EADD++
Sbjct: 66  IAFDTAEPTFRHKADPNYKANRDVAPDIFFQDLAQLQKILEESLNLPIFTAPGYEADDVL 125

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----------KIDIEHVIKK 171
            T    A   G+ V I++ D+DL QLV     +                  I+   V  K
Sbjct: 126 GTLANKASDNGWQVRILTGDRDLFQLVDDDRNIAVLYMGGGPYAKSGSPAFINEAGVKTK 185

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKK- 228
            G+ P K++ L+ALTGDS DNIPGI G+G KTA  LL+E G+L+ I         K +K 
Sbjct: 186 LGVIPTKVIDLKALTGDSSDNIPGIRGVGPKTAINLLKENGDLDGIFKILDYLETKGEKA 245

Query: 229 --------RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
                    +E +    E A LSR+L  +  +VPI   L +L L   N   L + L+ LE
Sbjct: 246 TQGVIKGALKEKLKTGKENAYLSRQLAEIMINVPIK-ELSNLELTKINQESLKNSLEGLE 304

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
              LIN++                             T         T+Q S  S     
Sbjct: 305 LFSLINQLPN--------------------------FTASFSKGGFNTNQRSISSTDKKS 338

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIIT 396
            N + TP +   +   +             I     ++  V KL          +    T
Sbjct: 339 NNKKNTPDEKIEDSGTQPPAIKP-----QIIETESQLKSLVNKLSRCNEPLQPVAIDTET 393

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK----NTLTKEILSY 452
            +++ F ++ + +     +  DD +      +I L  ++  +   +        + ++  
Sbjct: 394 TSLNPFKAELVGLGFCWGENLDDIA------YIPLGHNSQGELKDQSIRQQLPIQNVIQS 447

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L  +  + +  K+  N KYD+L+    GI + G   D +L  Y+ +S  + H +  IA++
Sbjct: 448 LTPWLSSSYHPKVLQNAKYDRLIFLHNGIPLEGVVMDTLLADYLSNST-NKHSLDEIAKR 506

Query: 512 ---WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE--KLL 566
              +     KE++   +       +       +   +  +  +L   +R +L  +  +L+
Sbjct: 507 EYGFTPINFKELVGKGE---TFKDVDIDTASIYCGMDVYLTRKLSFRIRSQLQTKGSELI 563

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            + E++++P+  ++++ME  GI ID   LK++S E+++ L  LEE  Y  +G +FNL+SP
Sbjct: 564 QLLEKVEQPLEPILAEMEARGICIDIPYLKELSKELNQTLKGLEEQAYKSAGFEFNLNSP 623

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG+ILF KL        KT    +T  ++ +    D+P++  ++E R LSK+ STY D
Sbjct: 624 KQLGEILFDKLALDKKKSRKTKTGWSTDANVLERLEADHPLVPLLVEHRTLSKLVSTYVD 683

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
           +LP  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+     KLI
Sbjct: 684 ALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLI 743

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           SADYSQIELRILAH++    L + ++N  D+H + A  +  +  E ++   RR  KTINF
Sbjct: 744 SADYSQIELRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKTINF 801

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            +IYG+   R A    + +SEA D++ R+  R+P +  ++E  +      GYV+T+ GRR
Sbjct: 802 GVIYGMGAQRFARSTGLNQSEAKDFLNRFKERYPKVFSFLELQERLALSKGYVQTLLGRR 861

Query: 867 IHY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
            ++                  D   + ++ +     RAA NAPIQGS+ADI + AM+ + 
Sbjct: 862 RYFNFDKNGLGRLLGSDPMNIDLKRARRAGMEAQQLRAAANAPIQGSSADIIKIAMVQLA 921

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
             L+   +A  +LLQ+HDELV EV    I     I+V +ME A    ++L VPL V+  +
Sbjct: 922 TKLKVSGVAANLLLQVHDELVLEVEPSVIEEVKNIVVSTMENA----VHLAVPLVVHASI 977

Query: 969 SNNWQEE 975
            +NW + 
Sbjct: 978 GDNWMDA 984


>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
 gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
          Length = 903

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/981 (32%), Positives = 501/981 (51%), Gaps = 87/981 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K + + L DG++ ++RA++  P L+ +  G  V A  GF ++L K+L + + +     
Sbjct: 1   MSK-SVIVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPD----C 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           +A+ FD    TFR+E++ DYKA RP +P+ L+ QL  VR    AF +P  E  GFEADD+
Sbjct: 56  YAISFDKKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT------VKEEKIDIEHVIKKWGI 174
           + T    A  EG  V I S D D MQLVSP   +               D   V  K+G+
Sbjct: 116 LGTLATRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAAVRAKYGL 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE +   +AL GD  DNIPG+PGIG KTA  L++EYG +E+I  N  +I     +    
Sbjct: 176 GPEHVADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQ---- 231

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                    +KL                     +   +             +++ TT  C
Sbjct: 232 ---------KKLA--------------------DNAEVAR----------QSKILTTIVC 252

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D      + LD +  E +      +   D   +  +F  L  +     +           
Sbjct: 253 D------LPLDFSIQECRSEHYNRQKVVD-LFRELEFFRLIHRLPGGENPGGGMTDMFNT 305

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            QK+    I       I N +++   V++L      +  +   + +A  ++  A+AIS  
Sbjct: 306 PQKVETRYI-------IANGQNLDSIVKRLTETKELALAVSGTSEEAIDARLTALAISPA 358

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           + +             +S      ++G      E    L     N++  K  HN KY   
Sbjct: 359 EGEAYF----------ISAEFIGSASGGQMFVSEGHPGLIALLTNKNITKTAHNAKYLMN 408

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +L   G  ++G + D ML +++L  G  +  I  +  +       ++      +      
Sbjct: 409 LLASAGQEIQGLDFDTMLSAHLL--GEKNLGIKDLVFEHFGVEIADVENILTQNGKKKSF 466

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S S++ E A   ++   +L  L   +L    L+ ++  ++ P++ ++  ME +GI +D D
Sbjct: 467 SASELSEAAQLVADYTFRLKGLFAAQLAEINLIDLFVNVEMPLVPILLGMERSGIMLDTD 526

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LLK ++ ++   +  LEE IY  +G  FN+ SP+QLG ILF +LK P   KTKTG + T 
Sbjct: 527 LLKGMAEKVGGQIFKLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YSTG 585

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+ L+++  G++ I+  ILE+R L K+KSTY D+LP  +N  T+R+HT ++   T TGRL
Sbjct: 586 AEVLDELK-GEHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRL 644

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP++ ++G++IRRAFI+P    +++ DYSQI+LR+LAH++    L + F  
Sbjct: 645 SSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLK 704

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA +  +   +V+ + RR AKT+NF +IYG+S + L     +  +EA  +IK
Sbjct: 705 DQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIK 764

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF ++P +  Y  + K+  R NGYVET+ GRR +  EINSP   +R   ER AIN P+Q
Sbjct: 765 AYFEKYPRVAIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQ 824

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G++ADI + AM+ + + L++ KL +++LLQ+HDEL+FEVP+ E    S +++ +M  A  
Sbjct: 825 GTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAEFKRMSALLMETMSGA-- 882

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             +   +PLKV +K   NW +
Sbjct: 883 --VTFEIPLKVELKSGANWGD 901


>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
 gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
          Length = 903

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/981 (31%), Positives = 500/981 (50%), Gaps = 87/981 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   + L DG++ ++RA++  P L+ +  G  V A  GF ++L K+L + + +     
Sbjct: 1   MSK-PVIVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPD----C 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           +A+ FD    TFR+E++ DYKA RP +P+ L+ QL  VR    AF +P  E  GFEADD+
Sbjct: 56  YAISFDKKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT------VKEEKIDIEHVIKKWGI 174
           + T    A  EG  V I S D D MQLVSP   +               D   V  K+G+
Sbjct: 116 LGTLATRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAAVRAKYGL 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE +   +AL GD  DNIPG+PGIG KTA  L++EYG +E+I  N  +I     +    
Sbjct: 176 GPEHVADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQ---- 231

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                    +KL                     +   +             +++ TT  C
Sbjct: 232 ---------KKLA--------------------DNAEVAR----------QSKILTTIVC 252

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D      + LD +  E +      +   D   +  +F  L  +     +           
Sbjct: 253 D------LPLDFSIQECRSEHYNRQKVVD-LFRELEFFRLIHRLPGGENPGGGMTDMFNT 305

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
            QK+    I       I N +++   V++L      +  +   + +A  ++  A+AIS  
Sbjct: 306 PQKVETRYI-------IANGQNLDSIVKRLTETKELALAVSGTSEEAIDARLTALAISPA 358

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           + +             +S      ++       E    L     N++  K  HN KY   
Sbjct: 359 EGEAYF----------ISAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTAHNAKYLMN 408

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +L   G  ++G + D ML +++L  G  +  I  +  +       ++      +      
Sbjct: 409 LLASAGQEIQGLDFDTMLSAHLL--GEKNLGIKDLVFEHFGVEIADVENILTQNGKKKSF 466

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S S++ E A   ++   +L  L   +L    L+ ++  ++ P++ ++  ME +GI +D D
Sbjct: 467 SASELSEAAQLVADYTFRLKGLFAAQLAETNLIDLFVNVEMPLVPILLGMERSGIMLDTD 526

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LLK ++ ++   +  LEE IY  +G  FN+ SP+QLG ILF +LK P   KTKTG + T 
Sbjct: 527 LLKGMAEKVGGQIFKLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YSTG 585

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+ L+++  G++ I+  ILE+R L K+KSTY D+LP  +N  T+R+HT ++   T TGRL
Sbjct: 586 AEVLDELK-GEHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRL 644

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP++ ++G++IRRAFI+P    +++ DYSQI+LR+LAH++    L + F  
Sbjct: 645 SSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLK 704

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   AA +  +   +V+ + RR AKT+NF +IYG+S + L     +  +EA  +IK
Sbjct: 705 DQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIK 764

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF ++P +  Y  + K+  R NGYVET+ GRR +  EINSP   +R   ER AIN P+Q
Sbjct: 765 AYFEKYPRVAIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQ 824

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G++ADI + AM+ + + L++ KL +++LLQ+HDEL+FEVP+ E+   S +++ +M  A  
Sbjct: 825 GTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAELKRMSALLMETMSGA-- 882

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             +   +PLKV +K   NW +
Sbjct: 883 --VTFEIPLKVELKSGANWGD 901


>gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101]
          Length = 1020

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1033 (28%), Positives = 484/1033 (46%), Gaps = 80/1033 (7%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
              +  L LVDG S  +R+FYA            +G+P +   GF   L     ++ K  +
Sbjct: 8    STKPLLLLVDGHSLAFRSFYAFSKGGEGGLSTKEGVPTSVTYGFLKALL----DNCKGLV 63

Query: 58   ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ-AFGIPAIEIQGFE 116
                 + FD    TFR+E    YKA+R + PE     L  ++   Q A  IP     G+E
Sbjct: 64   PQGVVIAFDTAEPTFRHEADEAYKAHRDEAPEHFFQDLGNLQQILQQALDIPLCMAPGYE 123

Query: 117  ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----------KIDIE 166
            ADD++ T    A  +G+ V I+S D+DL QLV     +                 +I  E
Sbjct: 124  ADDVLGTLANRAANDGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPVEIRRE 183

Query: 167  HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-- 224
             VI K G+ PE++V L+ALTGDS DNIPG+ G+G KTA  LLQ + +L+ +    + +  
Sbjct: 184  GVISKLGVTPEEVVDLKALTGDSSDNIPGVKGVGPKTAINLLQAHTDLDGVYTALAELQA 243

Query: 225  KQKKRRE-----------NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
               K ++            +    ++A  SR L  +  D+P+      L L   N   L 
Sbjct: 244  AGPKAKDPKGVLKGALLGKLEADRDSAYRSRMLAKILVDIPLPQDP-RLPLGAVNAEALA 302

Query: 274  SFLKALEF---TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ 330
              L+ LE     +L+N+ A  +  +         +       G + + +I       ++ 
Sbjct: 303  ESLEELELFSLRRLVNQFAQVFSAEPPESLAEA-ESGGQGTSGRSPKADIPGYPDPDSAA 361

Query: 331  FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
             ++     S   +  + Q   L+      Q          I + + +   +Q+L      
Sbjct: 362  GTAAPSAASSSPARASAQPSSLDAAPPELQP-------ELITSPEALAALMQRLMACTDV 414

Query: 391  S----FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD---STGKN 443
            +        T +++ F ++ + + ++  +   D ++ +       S   + D        
Sbjct: 415  AAPVALDTETTSLNPFRAELVGVGVAWGEGPADLAY-IPIGHRVGSSGETPDLLSPPPAQ 473

Query: 444  TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502
                ++L+ L  +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+    
Sbjct: 474  LPLDQVLTALAPWLGSAQHPKALQNAKYDRLILLRHGLPLEGVVMDTLLADYLRDANA-K 532

Query: 503  HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            H +  +AQ+   +      +          +   Q   +   + +V  +L  LLR +L  
Sbjct: 533  HGLELLAQRNFGFLPTSYSELVPKGADFSAVPIEQAALYCGMDVHVTRRLAPLLRAQLEE 592

Query: 563  --EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
               +L  + +R++ P+  V++ ME TGI+ID   L ++S+E+ + L  LE +    +G  
Sbjct: 593  LGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYLAELSSELGQTLQRLEADAKAAAGTD 652

Query: 621  FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
            FNL+SPKQLG++LF  L        KT    +T   + +     +P++  +LE R LSK+
Sbjct: 653  FNLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDAAVLEKLEDAHPVVSLVLEHRTLSKL 712

Query: 681  KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            KSTY D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+  
Sbjct: 713  KSTYVDALPALMEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPE 772

Query: 741  PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
               +LISADYSQIELRILAH++    L Q ++   D+H + A  +  +  ++VS   RR 
Sbjct: 773  AGWQLISADYSQIELRILAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADERRL 830

Query: 801  AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
             KTINF +IYG+   R A +  + +++A +++ +Y  R+P +  ++E  +      GYVE
Sbjct: 831  GKTINFGVIYGMGAQRFARETGVSQTQAKEFLSKYKQRYPKVFAFLELQERLALSRGYVE 890

Query: 861  TIFGRRIHYDEINS------------------PKSSIRNINERAAINAPIQGSAADITRR 902
            TI GRR  +    S                   +  +     RAA NAPIQGS+ADI + 
Sbjct: 891  TILGRRRPFAFDPSGLGRHLGKDPLEIDLDIARRGGMEAQQLRAAANAPIQGSSADIIKL 950

Query: 903  AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
            AM+ +H  L    L  ++LLQ+HDELV E   E +     +   +ME+A    + L VPL
Sbjct: 951  AMVQLHHQLAASGLPARLLLQVHDELVLEAAPEALEAVRTLTRETMERA----VELSVPL 1006

Query: 963  KVNIKVSNNWQEE 975
             V   V  NW E 
Sbjct: 1007 LVETGVGPNWMEA 1019


>gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
 gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
          Length = 887

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/986 (29%), Positives = 474/986 (48%), Gaps = 115/986 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  L L+DG S  +RAFYA P  +     G   NA+ GF +M   +L   +     +H
Sbjct: 3   ANKKRLLLIDGHSMAFRAFYALPAENFSTSGGQNTNAVYGFLSMFANILSEEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR E +P+YKA R   PE    Q+P+++    + GI  +    +EADDI
Sbjct: 59  AAVAFDVGRKTFRTEKFPEYKAQREAAPEEFKGQVPIIQDVLGSLGIVTLTKDNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           +AT T  A+ E + V I++ D+D +QLV+    +    +      +   E V  K+G+ P
Sbjct: 119 LATLTTQAQDE-YEVVIVTGDRDYIQLVNDDVTVLYPTRGVSTLTRFTPEEVENKYGLTP 177

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+P IPG+G KTA   + E G+LE ++ NA  IK  K  +   E 
Sbjct: 178 AQYPDFAALRGDPSDNLPNIPGVGEKTATKWIVENGDLEALIANADSIKG-KAGDAFRER 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +L+R+L  + TD+ + +  + L L+  +                +  VA  +D   
Sbjct: 237 IEQVKLNRELTQMVTDLVLPVGPDDLELKPAD----------------VGAVAKDFDDLE 280

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             +      +      G A E E  + + +                              
Sbjct: 281 FGVNLRERVLAAVPTDGSAPEPETVQLSEVT----------------------------- 311

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                          V+   + +W+   +  G A F        A  +  + I       
Sbjct: 312 ---------------VDDGPLDEWLSAHKGQGLAVFVTGHGAPAAGDAVAVGI------- 349

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                  V+     +S   ++ S G+        S L+ + E+    K  H+ K    +L
Sbjct: 350 -------VDKQRHAVSKQLAELSPGEE-------SALQTWLESAA-PKYLHSAKETFHML 394

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              GI++RG   D  + +Y+L  G+ ++D+  + Q+ L          R+ +   D++S 
Sbjct: 395 RGRGITLRGIAHDTAIAAYLLRPGQRTYDLGDVYQRHLQ---------RQLTTGSDQLSL 445

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  ++++  IL+L   L   L       +Y  L+ P++ ++++ME TGI +D D+L
Sbjct: 446 LDEDTTLVDSAAAILELAEKLTEDLRAINSYELYADLELPLVTILAEMEDTGIAVDMDVL 505

Query: 596 KQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           ++   EI++ +   E+    L  E   NLSSPKQL  +LF KL+ P   KTKTG      
Sbjct: 506 EEQLKEIAQKVTDAEDTARSLVDEPDLNLSSPKQLSVVLFDKLELPKTKKTKTGYSTAAK 565

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +         +P +  +L  R+  K+KST  + L   ++    R+HT ++     TGRL+
Sbjct: 566 EIETLAAKNPHPFLDQLLAHREWQKLKST-IEGLIKTVHDDG-RIHTTFNQTVASTGRLS 623

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP++T+ G++IR AF        L++ADYSQIE+R++AH+++   L + ++ 
Sbjct: 624 STEPNLQNIPVRTEAGRRIRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKE 683

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  V + +F V I+ V+P++RR  K +++ ++YG+S + L+ QL IP  EA   ++
Sbjct: 684 GEDLHNFVGSRVFDVPIDDVTPELRRRVKAMSYGLVYGLSAYGLSNQLGIPAGEAKKIME 743

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+  Y+++     R++GY  T+FGRR +  E+ S     R   ERAA+NAPIQ
Sbjct: 744 SYFQRFGGVKRYLDEVVEQARRDGYTSTVFGRRRYLPELTSDNRVARENAERAALNAPIQ 803

Query: 894 GSAADITRRAMISVHKSL----EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           G+AADI + AMI V  +L     D    +++LLQ+HDELV E+   E+     I+   M+
Sbjct: 804 GTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIAPGELEQVQAIVEEEMD 863

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
           +A    I LRVPL+V+     NW E 
Sbjct: 864 RA----ITLRVPLEVSAGTGTNWDEA 885


>gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
 gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
          Length = 886

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/986 (32%), Positives = 505/986 (51%), Gaps = 117/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVEPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  ILVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    E+ GF  TI++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFATKGEENGFQTTIVTGDRDLTQLASDKTTVEVTKSGVSELEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+  +G KTA+ L Q+YG++EN+  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASRLTQKYGSVENLYEHVDEMKKSKLKENLIN- 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                          +  +             + +   T D D+
Sbjct: 238 -------------------------------DKDK-----------AFLAKKLATIDRDS 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV +DI+  + + +  E        +   +F +  + + K   +   +K+      
Sbjct: 256 ----PVTIDIDDVKRQPVDYEKLRQFYEKLNFRKFLAELNASGKGQDDTATEKVEY---- 307

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         +++  + +    K+       F +     +   +  +  ++   DQ
Sbjct: 308 -------------TVLDDHNFKDV--KVTENDQVEFYLAMLGANYHLADFVGFSLKINDQ 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         + V    +   ++         LK   E+E   K   ++K   + L
Sbjct: 353 --------------IYVSKDVELLEEDN--------LKHLLEDEKIKKNVFDLKRTTVGL 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR GI   G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    KS  IP D
Sbjct: 391 HRLGIHAHGLDYDMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDMEVYGKGKSEHIPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            I    +  H     N I +L   L  KL   +   +++ ++ P   V+++ME+ G++++
Sbjct: 451 DI----LFNHLASKVNAIEKLKEPLLKKLKEHEQDDLFDTIEIPTARVLAKMEMNGMKVE 506

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  E +  L  LE+ IY+ +GE+FNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 507 ASTLIQLQNEFAVKLKELEDKIYEQAGERFNLNSPKQLGHILFEKLGLPVLKKTKTGY-- 564

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 565 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYLQTLTATG 623

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 624 RLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDAHMQEA 683

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 684 FKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAK 743

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I +Y+ K     R  GY ETI  RR +  +I++ K ++R   ER AIN
Sbjct: 744 EFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAIN 803

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 804 SPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQ 863

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 864 SA----VKLDVPLIADSGWGHNWYDA 885


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/1016 (30%), Positives = 499/1016 (49%), Gaps = 103/1016 (10%)

Query: 1   MQKEN---HLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSR 53
           M  +     L L+DG S  +RA+YA       L +   G+P +   GF N L ++++  +
Sbjct: 1   MTNQKDLPLLILIDGHSLAFRAYYAFLNSRRGLLKTSTGIPTSICFGFLNSLMQVIKVEK 60

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
            +    + A+ FD    TFR++    YKA RP+ PE  +  +  ++   +   +  I + 
Sbjct: 61  PK----YVAIAFDSKEKTFRHKFDVSYKAGRPETPENFIVDIKNLQKVLEILNLFTITMP 116

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---------TTCLYDTVKEEKID 164
           G+EADDI+ T    A  +G+ V I+S DKD  QL+S               ++  E+   
Sbjct: 117 GYEADDILGTLATEASNKGYRVKILSGDKDTFQLISDEQNISVLYLGRSGVNSSSEKGYT 176

Query: 165 I---EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
               + VI++ GI   ++V  +AL GD  DNIPG+ GIG KTA  LL EY  +E+I  N 
Sbjct: 177 EIISKTVIERLGIASFQVVDYKALCGDKSDNIPGVKGIGEKTAVKLLTEYKTIESIYENI 236

Query: 222 SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
             IK    ++ + E    A  SR L  + T+ P+   ++   L   +     +  + LE 
Sbjct: 237 EHIKGA-NQKKLKEGKSEAEHSRYLAKIITNCPLVFNIDEFKLVGFDQATAQNIFEKLEL 295

Query: 282 TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
            K    +          I                         +++  + +    QT+K 
Sbjct: 296 KKFRENINQLQKNLGGEI----------------------PHQSLQKVEEAINEQQTNKN 333

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
           N E   + L +  + +L +       Y  I                   ++   T  ++ 
Sbjct: 334 NKEICIKPLIINDILQLDKLINILTEYQDINYP---------------IAWDTETTGLNP 378

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             +K + I+    ++ ++ +      +I +         G+    +++L  L+   EN+ 
Sbjct: 379 QTAKLVGISCCWGEEVNNIA------YIPIEHKE-----GEQLSKEKVLEKLRPILENKC 427

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL-SYTRKE 519
           + K+  N K+D+LVL   GI + G   D ML SYV++  +S H ++S+ +++L + + ++
Sbjct: 428 YPKVFQNAKFDRLVLLNQGIQLNGVVFDTMLASYVINPDKS-HKLSSLCKQYLTNISSQD 486

Query: 520 ILK-SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMI 577
            L+        I  +  +QV  +   ++     L   L+ +L     L  ++  +++ + 
Sbjct: 487 YLELKINKQQTIADLDITQVANYCGMDAYSTFLLVKPLKKRLAEIPILEKLFLEVEQSLE 546

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            V+S+ME  GI ID + L  +S +   NLL LEE IY+ + EKFNL SPKQL  ILF  L
Sbjct: 547 KVLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEKIYEEAKEKFNLESPKQLSKILFENL 606

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           +  +    K     +T   + +   GD+PII  +L++R LSK++STY D+LP  ++ +T 
Sbjct: 607 QLSTKKSKKITTGYSTNHAILEKLKGDHPIIDYLLKYRTLSKLQSTYIDNLPTLVSNQTH 666

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+HT ++ + T TGRL+S +PNLQNIPI+T+L +KIR+AFISP    L+SADYSQIELRI
Sbjct: 667 RIHTSFNQSVTSTGRLSSSKPNLQNIPIRTELSRKIRKAFISPKKWLLVSADYSQIELRI 726

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH+++   L + + +  DIH + A  +F  + E+++ + R   KTINF +IYG+   R 
Sbjct: 727 LAHLSQEPLLVKAYCDCQDIHTLSAQLLF--DKEEITIEERNLGKTINFGVIYGMGSQRF 784

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A +  +  ++  D+IK+Y  R+  + +++E  K      GYV TI GRR +++  +    
Sbjct: 785 AREAGVTPTKGKDFIKKYHQRYKKVFQFLENLKIEAITKGYVTTILGRRRYFNFYSDSLR 844

Query: 878 SIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ++   N                   R+A NAPIQGS+ADI + AMI + K L       K
Sbjct: 845 NLYGCNPDEINLDELKYSYSDSQLLRSAANAPIQGSSADIIKVAMIKIEKLLR--NYQAK 902

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +LLQ+HDELVFE+P EE+      I   ME      + L +PL V I    NW E 
Sbjct: 903 LLLQVHDELVFEIPLEELEELQSEIKQIMEN----SVKLTIPLLVEINSGINWMEA 954


>gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
 gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
          Length = 985

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/1022 (29%), Positives = 498/1022 (48%), Gaps = 90/1022 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           QK+  L LVDG S  +R+FYA            +GLP +   GF   L    +    +  
Sbjct: 5   QKKPTLLLVDGHSLAFRSFYAFSKGGEGGLATKEGLPTSVTYGFLKSLLDNCRAISPQG- 63

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFE 116
                + FD P  TFR++  P+YKANR   P +    L  +++  +    +      G+E
Sbjct: 64  ---ITIAFDTPEPTFRHKTDPNYKANRDIAPPIFFQDLEQLQIILEKDLNLSICTAPGYE 120

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIE 166
           ADD++ T    A   G+ V I+S D+DL QLV                  +     I+  
Sbjct: 121 ADDVLGTLANKAADNGWIVRILSGDRDLFQLVDDERNIAIMYMGGGPYGKSGNPTLINEA 180

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK- 225
            V  K GI P K++  +ALTGDS DNIPG+ G+G KTA  LL E  +L+ +  +   ++ 
Sbjct: 181 GVKTKLGIVPTKVIDFKALTGDSSDNIPGVKGVGPKTAINLLNENKDLDGVFASLELLES 240

Query: 226 ----------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
                     +   +  + +  + A LSR L  +  +VPI  PL    L + N   L + 
Sbjct: 241 QGEKAYKGAIKGALKAKLKQGKDNAYLSRHLAEILVEVPIE-PLPSFKLSEINRENLENS 299

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           L+ LE   L+ ++                 + T    G +   +     +  TS  +   
Sbjct: 300 LQKLELNSLVRQMPAF--------------VATFSPGGFSAHKKTINTKSSNTSSKN--- 342

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395
               + N E  P +   E +  +    I+N+S   ++    I+  +Q  + I   +    
Sbjct: 343 ----QQNRENLPDE--KEGIPTIMPQIISNNSELSVL----IENLLQLDDPIQPVAIDTE 392

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
           T +++ F S+ + I +   ++ +  ++  +  I  DL    S +         +++  L 
Sbjct: 393 TTSLNPFQSELVGIGLCWGERPEQIAYIPLGHITEDLFEDQSSNL---QLPLIDVIKGLS 449

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            +  +    K+  N KYD+L+  +YGI + G   D +L  Y+ D     H + ++A++  
Sbjct: 450 PWLGSSEHPKVLQNAKYDRLIFLQYGIPLEGVIMDTLLADYLCD-VTHRHSLEAMAKREF 508

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYER 571
            +T     +          +S S    +   +  +  +L+ L +  L    +KL+ + E+
Sbjct: 509 GFTPTNFNEIVGKDETFKNVSISTASLYCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEK 568

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +++P+  +++ ME  GI+ID   LK++S E++K L ++E++ Y ++   FNLSSPKQLG+
Sbjct: 569 VEQPLEPILADMEARGIRIDIPYLKELSIELNKALKNIEKSAYKIAKTDFNLSSPKQLGE 628

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +LF +L        +T    +T  ++ +   GDNPI+  ++E R LSK+ STY ++LP  
Sbjct: 629 VLFEQLGLDKKKSRRTKTGWSTDANVLERLQGDNPIVPLVIEHRTLSKLLSTYVEALPQL 688

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           +  +T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+     +L+SADYS
Sbjct: 689 VEAQTGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPREGWQLLSADYS 748

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH++    L + + N  D+H + A  +  ++ E ++   RR  KTINF +IYG
Sbjct: 749 QIELRILAHLSGEASLQEAYRNGDDVHALTAKIL--LDKESITSNERRLGKTINFGVIYG 806

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +   R A    + +SEA D++ RY  R+  +  Y+E  +      G+VETI GRR H+  
Sbjct: 807 MGVQRFARSTGVSQSEAKDFLNRYKERYTNVFSYLELQERLALSKGFVETILGRRRHFHF 866

Query: 872 IN------------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                               + ++ +     RAA NAPIQGS+ADI + AM+ + K L++
Sbjct: 867 DKNGLGRLLGKNPLEIDLKLARRAGMEAQQLRAAANAPIQGSSADIIKVAMVKLDKELKN 926

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             L   +LLQ+HDELV EV          +++H+MEKA L    L VPL V   V  NW 
Sbjct: 927 EGLPANLLLQVHDELVLEVDPTATEQVKALVIHTMEKAVL----LNVPLVVEASVGKNWM 982

Query: 974 EE 975
           + 
Sbjct: 983 DA 984


>gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
 gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
          Length = 881

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/987 (32%), Positives = 478/987 (48%), Gaps = 124/987 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++   +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHNSLERFKNANGLHTNAIYAFHTMFENVMAKEQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR  +Y DYK  R K P     Q+P +R    A G+   E+  +EADDI
Sbjct: 59  VLVAFDAGKTTFRTAMYEDYKGGRSKTPGEFKEQMPYIRELINALGVQYYELDNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T     +KE F V ++S D+DL QL +    +  TVK     E     HV +K+ G+ 
Sbjct: 119 IGTLANKVDKELFDVVVLSGDRDLTQLATEHVKVDITVKGVSEIESYTPAHVAEKYDGLT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ ++ L GD+ DNIPG+  IG KTA  LL+EYG++E I  +   +K+ K       
Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKKSKM------ 232

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E     R++                                      +++   T D D
Sbjct: 233 -KENLINDREIA------------------------------------FLSKQLATIDVD 255

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ +D++  + +G  +E  +     +  + F                    L++L
Sbjct: 256 A----PIEVDVDKLKYEGKDLEKLVPFYQEMNFNSF--------------------LDKL 291

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q  ++     D    +V       +       G  +  +     +      + +A    +
Sbjct: 292 QITAEPVEMEDILFSVVEEVTEDMF------QGDTALYVEMMGDNYHLEDIVGVAWGNQE 345

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K   S + E                              + ++E   K  ++ K   + 
Sbjct: 346 -KIYVSNREELFESP---------------------AFTDWLKDEKRKKFVYDAKRTYVA 383

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPI 530
           L+RY  + +G   D++L +Y+LD+  +++DIA +A  +    +        K  K  +P 
Sbjct: 384 LNRYTTAPKGIAFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDEAIYGKGAKKGLPA 443

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D+        H       I  L   L  +L  +    ++E ++ P+  ++++MEITGI++
Sbjct: 444 DE---EDFFAHLARKVAAITNLTPKLTEELAAKNQTALFEEMELPLSMILAEMEITGIKV 500

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D   L Q+  E ++ L  +EE IY  +GE FNL+SPKQLG ILF K+  P   KTKTG  
Sbjct: 501 DASRLHQMKGEFAQRLHEIEEKIYAEAGETFNLNSPKQLGVILFEKMGLPVIKKTKTGY- 559

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    T T
Sbjct: 560 -STAVDVLEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGK-VHTRYVQTLTQT 617

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+  T L +
Sbjct: 618 GRLSSVDPNLQNIPIRLEEGRKIREAFVPRETDWVIYSSDYSQIELRVLAHISDDTHLKE 677

Query: 770 VFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R  A
Sbjct: 678 AFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 737

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF ++PG+  Y+E      +  GYVET++ RR +  +INS   +IR   ER AI
Sbjct: 738 QQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLPDINSRNFNIRTFAERTAI 797

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQGSAADI + AMI + K L++ KLA  MLLQ+HDELVFEVPE E+     ++   M
Sbjct: 798 NTPIQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDELVFEVPESELPRLDALVKEVM 857

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    + L VPL  +      W + 
Sbjct: 858 EQA----VALHVPLLTDSNWGKTWYDA 880


>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 876

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/981 (32%), Positives = 490/981 (49%), Gaps = 119/981 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S  +RAFYA PLL+ +  G+  NA+ GF  +L K+    +KE   ++F V F
Sbjct: 3   KLVLIDGNSLSFRAFYALPLLTNRA-GIHTNAVYGFAMLLEKI----KKEEQPTNFLVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E + DYK  R K P  L  Q PL+R    A+ I   E++ +EADDII T +
Sbjct: 58  DAGKTTFRHETFGDYKGGRQKTPPELSEQFPLIRQLLDAYQIKHYELENYEADDIIGTLS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKMV 180
             A+K G    I++ D+DL QL S    +Y T K     +    E + +K+ G+ P +++
Sbjct: 118 KEADKAGIQTIIVTGDRDLTQLASDNVTIYYTKKGVTDVDHYTPEFIAEKYNGLKPSQII 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPGI G+G KTA  LL ++  +EN                + E+ +  
Sbjct: 178 DMKGLMGDTSDNIPGIAGVGEKTAIKLLNQFETVEN----------------LYEHID-- 219

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                    + +G +L   L+  +    +++   T   D + IE
Sbjct: 220 -------------------------EVSGKKLKEKLENGQEDAFMSKQLATIKRD-SPIE 253

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             + D    ++           D T K   F  L  +      + + +    E+ +   +
Sbjct: 254 VSLKDTKLPDD----------VDQTAKIDLFKELDFKQMLNQIDVSAEDKTEEKREYEVE 303

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           +   N ++                  +  AS     D  D   +  +   I         
Sbjct: 304 HNFENINF----------------NDLSEASIHFEVDEGDYLTADILKFGI--------- 338

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
             + +  F+ ++     D              L ++ EN+   K  ++ K      HR  
Sbjct: 339 --QADGHFVVINAEQINDYP-----------ELVEWLENDQTRKRVYDAKKTYAEAHRLN 385

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEI---LKSRKSSIPIDKISD 535
           I ++    DIML SY+LD  RS  D+ S+   +  +Y  +E+    K RK  IP D++ D
Sbjct: 386 IDIKNVSFDIMLASYILDPSRSIDDVYSVVHNYGQNYVAEEVNIYGKGRKRQIPEDEVLD 445

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +    +     + I +   ++  +L     L ++E L+ P+  ++ +ME  GI  D D L
Sbjct: 446 T----YIASILDAISESTPIMYDQLEEFNQLDLFESLELPLARILGEMEELGIYTDVDEL 501

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  EI   L +L   I+D +GE FN++SPKQLG +LF  LK P   KTKTG   +TA 
Sbjct: 502 KEMEKEIQGKLDTLITRIHDAAGEDFNINSPKQLGVVLFENLKLPVIKKTKTGY--STAV 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G++PII +ILE+RQLSK++STY + L   I     R+HT ++     TGRL+S
Sbjct: 560 DVLEQLQGEHPIIDDILEYRQLSKLQSTYIEGLQKVIQND-HRIHTHFNQTLAQTGRLSS 618

Query: 716 LEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIP++ + G++IR+AF  + P   ++SADYSQIELR+LAHI +   + + F   
Sbjct: 619 VDPNLQNIPVRLEEGRRIRKAFKPAEPGNVILSADYSQIELRVLAHITQDESMIKAFREG 678

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R  A  +I  
Sbjct: 679 HDIHTATAMKVFGVEPDEVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKAAKQFIDD 738

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FPG+ +Y+       +  GYVET+  RR +  +I S   + R+  ER A+N PIQG
Sbjct: 739 YLDSFPGVKQYMSDIVKDAKAKGYVETLLHRRRYIPDITSRNFNRRSFAERTAMNTPIQG 798

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM++  K +++      +LLQ+HDEL+FE+PEEE+   S  I   M+ A   
Sbjct: 799 SAADIIKLAMVNFDKEIKNKDFHAHLLLQVHDELIFELPEEEVEAFSAFIEDIMDNA--- 855

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            I+L VPL+V+      W + 
Sbjct: 856 -IDLDVPLQVDTNYGPTWYDA 875


>gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 907

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/978 (29%), Positives = 461/978 (47%), Gaps = 98/978 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++       +HFA
Sbjct: 16  RPRLMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASMLANTLRDE----APTHFA 71

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    T+R+E + +YKANR K P+    Q+ L+     +  +P   ++GFEADD+IA
Sbjct: 72  VAFDVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDSMHVPRFAVEGFEADDVIA 131

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE EGF V I++ D+D  QLVS  T +    K      +   E V +K+G+ P +
Sbjct: 132 TLATEAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQ 191

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA  + ++G+   ++     +K  K  +N+ ++ E
Sbjct: 192 YPDFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKG-KAGQNLRDHLE 250

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           + +L+R+L  L   V +   +  L                           T YD     
Sbjct: 251 SVKLNRRLTELERRVELPRTVTDLER-------------------------TAYDRKGVA 285

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           +    L+I     +      +   +                   +E TP       L   
Sbjct: 286 VILDTLEIRNPSLRERLYAVDPGAEE------------------AEATPVVADGVELDG- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                       ++ T ++  W+ +          + T  +       +A+A S      
Sbjct: 327 -----------TVLGTGELAGWLAEHGAQPLGVATVDTWALGTGSVTEVALAAS------ 369

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 +  + D +     D T             + +  +    K+ HN K    VL  
Sbjct: 370 ----DGKAAWFDPTELDEADET-----------AFRSWLSDPDRPKVFHNAKGAMRVLAE 414

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           +G S+ G   D  L +Y++  GR S D+ +++ ++L    +E+  +  +   +   +D  
Sbjct: 415 HGWSVAGVGMDTALAAYLVKPGRRSFDLDALSLEYLH---RELAPAAAADGQLAFGADEG 471

Query: 538 V-QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              E  +  +  IL L      +L       +   ++ P   ++++ME  GI  D++ L+
Sbjct: 472 AEAEVLMVQARAILDLGETFESRLADVGAADLLRDMELPTSALLARMERHGIAADREHLQ 531

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +    +  +    +  +  +G +FNL SPKQL ++LF +L  P   KTKTG        
Sbjct: 532 AMEQMFAGAVQQAVKEAHAAAGREFNLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADAL 591

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  DN +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+S 
Sbjct: 592 AWLAAQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLSST 649

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  
Sbjct: 650 DPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLTEAFTSGE 709

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H   AA++F V    V  +MRR  K +++ + YG+S F L+ QL I  +EA   +  Y
Sbjct: 710 DLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARGLMDAY 769

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+ +  +  R  GY  T+FGRR +  ++NS     R   ER A+NAPIQG+
Sbjct: 770 FERFGGVRDYLRRVVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGT 829

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM++V K+L +  L ++MLLQ+HDE+V E+   E   A +++   M  A    
Sbjct: 830 AADIVKIAMLNVDKALREADLKSRMLLQVHDEIVLEIAPGERAAAEELVRREMANA---- 885

Query: 956 INLRVPLKVNIKVSNNWQ 973
           + LRVPL V++    +W+
Sbjct: 886 VQLRVPLGVSVGAGPDWE 903


>gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
 gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
          Length = 878

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/980 (32%), Positives = 484/980 (49%), Gaps = 115/980 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            ++    ++DGSS I+RAFYA P       G P  AI GF NML KL+   + +      
Sbjct: 7   SEQKRFLVLDGSSLIFRAFYALPPDLSDSHGQPTGAIFGFSNMLTKLIAEQQPDL----M 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A+ FD    TFR E Y DYK  R K PE LL Q PL+R      GIP +E   +EADDII
Sbjct: 63  ALAFDKSRHTFRTERYADYKGTRDKTPEELLSQFPLLREFAANMGIPFLEKDNYEADDII 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T    A  EG+ V +++ D+D +QLV P   +  T K     +  D     +++G  P 
Sbjct: 123 GTLATQAAAEGYDVRVVTGDRDALQLVRPNLRVLLTKKGISELKDYDTAAFEEEYGFEPL 182

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ L+ L GD+ DNIPGIPG+G KTA+ LL  YG++EN+L +   +  K     + E  
Sbjct: 183 KLIDLKGLMGDTSDNIPGIPGVGPKTASKLLLAYGSVENVLAHVEDVSGK----KLKE-- 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                  +L+       ++  L  + L       + +  +                    
Sbjct: 237 -------RLMEYADQARLSKELATIELHVPEFEFVEADYR-------------------- 269

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I+P +  +    +         + +     ++ +     T    +E     L+ E    
Sbjct: 270 -IQPDMEKMQAFCDAHELRAVWRNFERLYGPAELALDLGDTGDAAAEDLSYDLWDETA-- 326

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                                  V+        +   I + +  F S    +A+      
Sbjct: 327 -----------------------VRAAAEAPYLAVSGIFEGLAPFVS-IEGLAVVARPDA 362

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +   F  +                           L    E+E  + +   +K       
Sbjct: 363 EKAGFVPK--------------------DSAAFPALLSLLESEKQVAV-FGLKRYDQA-- 399

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G+  +  F DI L +Y+L+  RS + +  ++QK+L     E              S +
Sbjct: 400 --GVRGQNDFFDIELAAYLLEPERSKYALPELSQKYLQEMAPE--------------SFA 443

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             +  A+  +  I +L+ LL  KL  E+L H+ + ++ P+++V++ ME  G+ +++  L 
Sbjct: 444 DERSRAVWEAKTISRLYPLLGAKLEEEELTHLMKTVELPLVEVLAAMEQNGVYVNRAHLA 503

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           + + E++  L ++E++IY+++G  FNL+SPKQLG +LF +L  P   KTKTG + T A+ 
Sbjct: 504 EKTEEVADRLQTIEQSIYEMAGHTFNLNSPKQLGTVLFEELDLPVRKKTKTG-YSTNAEV 562

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   ++PI++ IL +R  SK+KSTY D +   I   T RVHT ++   T TGRL+S 
Sbjct: 563 LESLRL-EHPIVEQILAYRLWSKLKSTYLDGITGLIRTDTGRVHTSFNQTVTATGRLSSS 621

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++T+ G+ IR  F        L+SADYSQIELR+LAH++       VF+   
Sbjct: 622 DPNLQNIPVRTEEGRMIRALFEPGEGYDYLLSADYSQIELRLLAHMSGDENFIDVFKRGQ 681

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   AAE+FG+ +E+V+P++RRHAK +NF I+YGIS F LA  L I R EA DYI RY
Sbjct: 682 DIHARTAAEVFGIPLEEVTPELRRHAKAVNFGIVYGISDFGLARNLHISRKEAGDYISRY 741

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+PG+  +++K      + GYV T+FGRR     I S   + R + ER A+N PIQG+
Sbjct: 742 FERYPGVRAFMDKVVAEAHETGYVTTMFGRRRELPAIKSRNFNQRMLAERMAMNTPIQGT 801

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI+ +  L++  + +++LLQ+HDELV EV E E+     I+  SME      
Sbjct: 802 AADVIKLAMIAAYHRLKEAGVKSRILLQVHDELVLEVVESELDVVQAILRESMEHV---- 857

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           + L VPL ++I    NW E 
Sbjct: 858 VALSVPLIIDIHWGRNWAEA 877


>gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205]
          Length = 985

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/1025 (28%), Positives = 474/1025 (46%), Gaps = 107/1025 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L LVDG S  +R+FYA            +G+P +   GF   L     ++ K        
Sbjct: 11  LLLVDGHSLAFRSFYAFSKGGEGGLSTKEGIPTSVTYGFLKALL----DNCKGLAPQGVV 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFEADDII 121
           + FD    TFR+E    YKA+R   PE     L  ++   +    IP     G+EADD++
Sbjct: 67  IAFDTAEPTFRHEADEAYKAHRDVAPEHFFQDLGNLQQILEQSLDIPLCMAPGYEADDVL 126

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----------KIDIEHVIKK 171
            T    A  +G+ V I+S D+DL QLV     +                 +I  + V+ K
Sbjct: 127 GTLANRAANDGWRVRILSGDRDLFQLVDDKRDIAVLYMGGGPYAKSSGPLEIRRDGVVAK 186

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKR 229
            G+ PE++V L+ALTGDS DNIPG+ G+G KTA  LLQ YG+L+ I     ++     K 
Sbjct: 187 LGVTPEEVVDLKALTGDSSDNIPGVKGVGPKTAINLLQAYGDLDGIYAALEQLEAAGPKA 246

Query: 230 RE-----------NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           ++            +    E A  SR L  +  D+P+                       
Sbjct: 247 KDPKGALKGALLGKLSTDRENAYRSRMLAEILVDIPLPTDP------------------- 287

Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
                   R+        +  E +      +  + +     +  +        +    + 
Sbjct: 288 --------RLPLGAVKSDSLAESLEELELFSLRRQVNSFATVFSNEPPPAVAAADPKAKA 339

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI----GSASFKI 394
                  +         +  +   +       I +++ ++  VQ+L          +   
Sbjct: 340 EAKAEALSDPAADDGDARDAAPPALAP---QLITSSEALEALVQRLLGCCDRQSPVALDT 396

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T +++ F ++ + + +   +  D  +      +I L  H ++ S        ++L  L 
Sbjct: 397 ETTSLNPFQAELVGLGVCWGEGLDQLA------YIPLG-HQAELSDPAQLPLDQVLGALA 449

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK-- 511
            +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+    H +  +AQ+  
Sbjct: 450 PWLSSAAHPKTLQNAKYDRLILLRHGLPLAGVVMDTLLADYLRDANA-KHGLELLAQRNF 508

Query: 512 -WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHV 568
            +L  +  E++    +      +  +Q   +   + +V  +L  LLR +L    E L  +
Sbjct: 509 GFLPTSYSELVPKGAN---FSAVPMAQAALYCGMDVHVTYRLTPLLRGQLEALGEPLTAL 565

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
            ++++ P+  V++ ME TGI+ID D L ++S E+   L  LE +  + +G  FNL+SPKQ
Sbjct: 566 LDQVELPLEPVLALMEATGIRIDTDYLGELSRELKATLERLESDAKEAAGTDFNLASPKQ 625

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG++LF  L        KT    +T   + +     +P++  +LE R LSK+KSTY D+L
Sbjct: 626 LGELLFDTLGLDRKKSRKTKTGWSTDATVLEKLEDAHPVVPLVLEHRTLSKLKSTYVDAL 685

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+      LISA
Sbjct: 686 PALMEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEAGWTLISA 745

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRILAH++    L + +++  D+H + A  +F  + ++V+   RR  KTINF +
Sbjct: 746 DYSQIELRILAHLSGEEVLVKAYQSGDDVHALTARLLF--DKDEVTSDERRLGKTINFGV 803

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+   R A +  + ++EA +++ +Y  R+P +  ++E  +      GYVETI GRR  
Sbjct: 804 IYGMGVQRFARETGVSQAEAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETILGRRRP 863

Query: 869 YDEINS------------------PKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           +    S                   +  +     RAA NAPIQGS+ADI + AM+ + + 
Sbjct: 864 FAFDPSGLGRHLGKDPLEIELEVARRGGMEAQQLRAAANAPIQGSSADIIKLAMVQLQQR 923

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L +  L  ++LLQ+HDELV E   E + T   +   +ME+A    + L VPL V   V  
Sbjct: 924 LTESALPARLLLQVHDELVLEAAPEALETVLNLTRETMERA----VTLSVPLVVETGVGP 979

Query: 971 NWQEE 975
           NW E 
Sbjct: 980 NWMEA 984


>gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118]
          Length = 886

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/986 (32%), Positives = 504/986 (51%), Gaps = 117/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    EK GF  TI++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFAAKGEKTGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E I  +   +K+ K +EN++  
Sbjct: 179 TEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSVEGIYDHIDEMKKSKLKENLIN- 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                          +  +             + +   T D D+
Sbjct: 238 -------------------------------DKDK-----------AFLAKKLATIDRDS 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV LDI+  + + +  E        +   +F  L+D  +    + + +   +E   
Sbjct: 256 ----PVTLDIDDIKRQPVDYEKLRQFYEKMNFRKF--LADLNASGAGQDSTEVEKVE--- 306

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++N         K     +  F +     +   +  +  ++   D+
Sbjct: 307 ------------YIVLNDNVKDV---KATEDDTIEFYLEMLGANYHLAPFVGFSLKINDK 351

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         + V    +   ++         +K   E+E   K   ++K   +  
Sbjct: 352 --------------IYVSRDVELLEEDN--------IKHILEDEKIKKNVFDLKRTMVAA 389

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR GI   G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    KS  IP D
Sbjct: 390 HRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDD 449

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++  H     N I +L   L  KL   +   +++ ++ P   V+++ME+ G++++
Sbjct: 450 ---DDELFNHLASKVNAIEKLKRELLKKLKEHEQDALFDTIEIPTACVLARMEMNGMKVE 506

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  E +  L  LE+ IY  +GEKFNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 507 ASTLIQLQNEFAVKLKELEDKIYGQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGY-- 564

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 565 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYLQTLTATG 623

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 624 RLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEA 683

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 684 FKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQ 743

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I +Y++K     R  GY ETI  RR +  +I++ K ++R   ER AIN
Sbjct: 744 EFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAIN 803

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 804 SPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQ 863

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 864 SA----VKLDVPLIADSGWGHNWYDA 885


>gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135]
 gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135]
          Length = 919

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/977 (32%), Positives = 508/977 (51%), Gaps = 65/977 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATP--LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             ++L+D  + I+R ++      L+ K  G  VNA  GF   L+ +++    E+      
Sbjct: 2   KEIYLIDALNIIFRNYHVMKNNPLTNKK-GENVNAFIGFFKTLFFIIKEKNPEN----LI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR + YP YKA R   P+ L+PQ+  ++ +     IP  EIQG+EADD+IA
Sbjct: 57  VTFDSETQTFRQQKYPSYKATRDAPPDNLIPQIYWIKESLIKANIPMFEIQGYEADDLIA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180
           ++   AE   +   IIS DKDL+QL+S  T +         ++D ++V+KK+G+   ++ 
Sbjct: 117 SFAKKAEINNYLTYIISPDKDLLQLMSAKTKILKIENSSFVEMDNDYVMKKFGVNKSQIK 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              ++ GD  DNIPGI GIG K AA LL E+  L  I  N   I   K RE +L+  E A
Sbjct: 177 DYLSIVGDRSDNIPGIKGIGEKGAAKLLNEFQTLNGIYDNLDSI-NNKYREILLKERENA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS +L+ L  D+ +   LE   LE+     L+   +    T LI    T      A  +
Sbjct: 236 FLSYELISLVEDLELP-ALEKFKLENLKEDILL-LFEEYSATTLIKSYKTILKKRYATNQ 293

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                  T  N+    +TEI + TT  ++   ++ ++                       
Sbjct: 294 TQKSLFETNINQT---DTEILQTTTSHSNALKTIQEE----------------------- 327

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I+  + +   ++KL+     +    T +++   ++ I I++S  +     
Sbjct: 328 ----NIKYETILKKEQLDLLIEKLKQANYVAIDTETTSLNVHEAQIIGISVSFKE----- 378

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E+ +I +          K      I+    +FF+      IG N K+D  +L ++ 
Sbjct: 379 ---FESYYIPIETKEK-----KTIEKAYIIQKFNEFFK-AQPKLIGQNYKFDYKILKKHE 429

Query: 481 ISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
            ++   + D M+ +YV+D   +   +  +A+K+L +      +    +  +  I    V 
Sbjct: 430 FNVIPPYFDTMIAAYVIDPN-TKVSLDFLAEKYLMHKNIRYEEIVAQNGTLKDIPLEMVS 488

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++++  +L+ +   KL  + L ++   ++ P  +V+++ME  GI +D+D L+Q  
Sbjct: 489 NYAAEDADITFRLFKIFTKKLKEDNLENLMTDIEMPFSNVITEMEENGIYLDKDYLRQYG 548

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ K L  +E  I    G +FNL+S KQL  +LF +L        +  +  +T   + +
Sbjct: 549 YELDKELKLIENEIIKSIGIEFNLNSTKQLHTVLFERLNLVLP---QNVKQDSTDIKVLE 605

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                +  I  ++++RQ++K+K+TY D+L   +N++T ++HT +    T TGR++S  PN
Sbjct: 606 TIKEQHESIPKLIQYRQIAKLKNTYTDNLIEFVNEKTNKIHTNFIQTKTATGRISSTSPN 665

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK + G+KIR AF        ISADYSQIEL ILAH+++   L + F+N  DIH 
Sbjct: 666 LQNIPIKDEKGRKIREAFKPEKGNIFISADYSQIELVILAHLSEDESLIEAFKNKKDIHI 725

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+++F V+ EKV+  MRR AK+INF IIY +S FRL+ +L I R EA  +I  YF+ +
Sbjct: 726 KTASQLFKVDEEKVTSSMRRIAKSINFGIIYRMSAFRLSKELSIKREEAQKFIDSYFNLY 785

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             I  +I+   +FVR+NGY ET+  RR +  EINS   S R+  ER AIN+ IQGSA+DI
Sbjct: 786 SKIKTFIQNQIDFVRKNGYSETLLKRRRYIKEINSQNYSERSGAERIAINSTIQGSASDI 845

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V+  L+   L +K+LLQ+HDE++ E PE+E    ++II   ME A      L+
Sbjct: 846 MKIAMIKVYNELKSKNLKSKILLQVHDEMLIESPEQECEEVNKIIKTMMENA----YPLK 901

Query: 960 VPLKVNIKVSNNWQEEN 976
           +PLKVNI+   +W E +
Sbjct: 902 IPLKVNIETGKSWGEIH 918


>gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
 gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
          Length = 886

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/982 (29%), Positives = 472/982 (48%), Gaps = 109/982 (11%)

Query: 1   MQKE-NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M    N L L+DG S  +RAFYA P  +     G   NA+ GF +ML  LL   +     
Sbjct: 1   MTSTSNRLMLIDGHSMAFRAFYALPAENFSTSGGQATNAVYGFLSMLSSLLNEEK----P 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           SH AV FD    TFR +++PDYKA R   P     Q+ L++   +  GI  +E + +EAD
Sbjct: 57  SHVAVAFDVGRKTFRTDMFPDYKAQREATPPEFKGQVGLIKDVLEVLGITTLEKENYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D+IAT    A+  GF   I++ D+D  QLV+ TT +   ++      +   E V +K+G+
Sbjct: 117 DVIATLATAAQPLGFETLIVTGDRDSFQLVNATTTVLYPMRGVSVLHRFTPEAVEEKYGL 176

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +     AL GD  DN+P IPG+G KTA   + EYG+L+ +L  A  +K  K   ++ 
Sbjct: 177 TPAQYPDFAALRGDPSDNLPNIPGVGPKTATKWIVEYGSLDELLERADEVKG-KAGTSLR 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  E  R++R L  +  D+ +                                    Y  
Sbjct: 236 ERLEQVRMNRTLTEMIKDLELP-----------------------------------YSP 260

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D   ++PV +     +        E++  T ++    S++   T+   +E+  +      
Sbjct: 261 DQLGLKPVQVAGVAEKFD------ELEFGTNLRERVMSAVGADTTTALTEERAEVT---- 310

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                            V+   ++ W+ + +  G A F     T     ++ +AIA    
Sbjct: 311 -----------------VDQASLKDWLAQHKNQGLALFVRGRGTPATGDAEALAIAD--- 350

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                   +   I +DLS    QD              L ++  +E   K  H  K    
Sbjct: 351 -------KQRHVIAVDLSDIDPQDE-----------KALAQWLRSET-PKYLHEAKATFH 391

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +L   G  + G   D  + +Y+L  G+ ++D+  + Q+ L           +  + +   
Sbjct: 392 MLSGRGFELNGVAHDTAIAAYLLRPGQRTYDLKDVYQRHLQRQLS--GDETQGQLSLLDA 449

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            DS   E  I++   IL+L   L  +L       +Y  L+ P++ ++++ME  GI +D +
Sbjct: 450 PDS---EELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVE 506

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            L++      + +   E    +++G+   NLSSPKQL  +LF  L  P   KTKTG    
Sbjct: 507 TLEEQLKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTGYSTA 566

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             +         +P + ++L  R+  K+K+T  + L   +     R+HT ++     TGR
Sbjct: 567 AKEIEALAVKHPDPFLDHLLAHRENQKLKTTL-EGLIKAVGSDG-RIHTTFNQTVASTGR 624

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIP++T  G++IR AF+       L++ADYSQIE+R++AH+++   L + +
Sbjct: 625 LSSTEPNLQNIPVRTQDGRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAY 684

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L  QL IP  EA   
Sbjct: 685 RQGEDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQI 744

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF RF G+ +Y++      R++G+  T+FGRR +  E+ S     R   ERAA+NAP
Sbjct: 745 MTSYFERFGGVKQYLDNVVEQARKDGFTSTLFGRRRYLPELGSDNRVARENAERAALNAP 804

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI V + L+   + +++LLQ+HDELV E+   E+    +I+   M+ A
Sbjct: 805 IQGTAADIIKVAMIRVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAA 864

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
               I+LRVPL+V+     NW+
Sbjct: 865 ----ISLRVPLEVSAGSGPNWE 882


>gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium pseudotuberculosis I19]
          Length = 886

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/982 (29%), Positives = 472/982 (48%), Gaps = 109/982 (11%)

Query: 1   MQKE-NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M    N L L+DG S  +RAFYA P  +     G   NA+ GF +ML  LL   +     
Sbjct: 1   MTSTSNRLMLIDGHSMAFRAFYALPAENFSTSGGQATNAVYGFLSMLSSLLNEEK----P 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           SH AV FD    TFR +++PDYKA R   P     Q+ L++   +  GI  +E + +EAD
Sbjct: 57  SHVAVAFDVGRKTFRTDMFPDYKAQREATPPEFKGQVGLIKDVLEVLGITTLEKENYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D+IAT    A+  GF   I++ D+D  QLV+ TT +   ++      +   E V +K+G+
Sbjct: 117 DVIATLATAAQPLGFETLIVTGDRDSFQLVNATTTVLYPMRGVSVLHRFTPEAVEEKYGL 176

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +     AL GD  DN+P IPG+G KTA   + EYG+L+ +L  A  +K  K   ++ 
Sbjct: 177 TPAQYPDFAALRGDPSDNLPNIPGVGPKTATKWIVEYGSLDELLERADEVKG-KAGTSLR 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  E  R++R L  +  D+ +                                    Y  
Sbjct: 236 ERLEQVRMNRTLTEMIKDLELP-----------------------------------YSP 260

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D   ++PV +     +        E++  T ++    S++   T+   +E+  +      
Sbjct: 261 DQLGLKPVQVAGVAEKFG------ELEFGTNLRERVMSAVGADTTTALTEERAEVT---- 310

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                            V+   ++ W+ + +  G A F     T     ++ +AIA    
Sbjct: 311 -----------------VDQASLKDWLAQHKNQGLALFVRGRGTPATGDAEALAIAD--- 350

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                   +   I +DLS    QD              L ++  +E   K  H  K    
Sbjct: 351 -------KQRHVIAVDLSDIDPQDE-----------KALAQWLRSET-PKYLHEAKATFH 391

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +L   G  + G   D  + +Y+L  G+ ++D+  + Q+ L           +  + +   
Sbjct: 392 MLSGRGFELNGVAHDTAIAAYLLRPGQRTYDLKDVYQRHLQRQLS--GDETQGQLSLLDA 449

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            DS   E  I++   IL+L   L  +L       +Y  L+ P++ ++++ME  GI +D +
Sbjct: 450 PDS---EELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVE 506

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            L++      + +   E    +++G+   NLSSPKQL  +LF  L  P   KTKTG    
Sbjct: 507 TLEEQLKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTGYSTA 566

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             +         +P + ++L  R+  K+K+T  + L   +     R+HT ++     TGR
Sbjct: 567 AKEIEALAVKHPDPFLDHLLAHRENQKLKTTL-EGLIKAVGSDG-RIHTTFNQTVASTGR 624

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIP++T  G++IR AF+       L++ADYSQIE+R++AH+++   L + +
Sbjct: 625 LSSTEPNLQNIPVRTQDGRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAY 684

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L  QL IP  EA   
Sbjct: 685 RQGEDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQI 744

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF RF G+ +Y++      R++G+  T+FGRR +  E+ S     R   ERAA+NAP
Sbjct: 745 MTSYFERFGGVKQYLDNVVEQARKDGFTSTLFGRRRYLPELGSDNRVARENAERAALNAP 804

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI V + L+   + +++LLQ+HDELV E+   E+    +I+   M+ A
Sbjct: 805 IQGTAADIIKVAMIRVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAA 864

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
               I+LRVPL+V+     NW+
Sbjct: 865 ----ISLRVPLEVSAGSGPNWE 882


>gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
 gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
          Length = 990

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1027 (28%), Positives = 470/1027 (45%), Gaps = 108/1027 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L+DG S  +R+FYA            DG+P +   GF   L     +  K    +   
Sbjct: 13  LLLIDGHSLAFRSFYAFSKGGEGGLSTKDGVPTSVTYGFLKALL----DHCKGLEPNGLV 68

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFEADDII 121
           V FD    TFR++    YKA+R + PE     L  ++   +    IP     G+EADD++
Sbjct: 69  VAFDTDVPTFRHDADAAYKAHRDEAPEAFFQDLANLQTILRESLDIPLCMAPGYEADDVL 128

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEE---KIDIEHVIKK 171
            T    A   G+ V I+S D+DL QLV  +  +           K     ++  E V+ K
Sbjct: 129 GTLANRAADAGWRVRILSGDRDLFQLVDDSRDIAVLYMGGGPYAKNSGPVEVRREGVVSK 188

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKR 229
            G+ PE++V L+ALTGDS DNIPG+ G+G KTA  LL  Y +L+ I      +     K 
Sbjct: 189 LGVTPEEVVDLKALTGDSSDNIPGVRGVGPKTAINLLAAYEHLDGIYAALEALERSGPKA 248

Query: 230 RE-----------NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           ++            + +  + A  SR L  +  ++P+      L L   +   L S L  
Sbjct: 249 KDPKGVLKGALVGKLKDDRDNAFRSRMLAEILVNIPLPEAP-RLELGRVDREALRSSLDE 307

Query: 279 LEFTKLIN---RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           LE   L     R A  +  DA   +                                   
Sbjct: 308 LELASLARQVDRFAALFSADAGAAD----------------------------------- 332

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----AS 391
              + I+ E              +     +     I++ + +   VQ+L          +
Sbjct: 333 ---ATISQEAKAVAEEGALAAPAAAGGPPDLQPQVILSPEALAALVQRLLGCTDPAAPVA 389

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST--GKNTLTKEI 449
               T  ++ F ++ + + ++  +   + ++        ++     ++    +     E+
Sbjct: 390 LDTETTALNPFQAELVGLGVAWGEGLTELAYIPIGHQPPVADDLLSETPTPPRQLPLDEV 449

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L+ L  +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+    H +  +
Sbjct: 450 LTALAPWLASAEHPKALQNAKYDRLILLRHGLPLGGVVMDTLLADYLRDANA-KHGLEVL 508

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLL 566
           AQ+ L +T     +          +       +   + +V  +L  LLR +L      L 
Sbjct: 509 AQRNLGFTPTSYGELVPKGASFAAVPVEAAALYCGMDVHVTRRLSPLLRRQLEELGPSLP 568

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            + + ++ P+  V++QME TGI+ID   L+++S E+   L  LE      +G +FNL+SP
Sbjct: 569 ALLDGVELPLEPVLAQMEATGIRIDTAYLQELSEELGATLARLEAEARAAAGVEFNLASP 628

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG++LF  L        +T    +T  ++ +    D+P++  +LE R LSK+KSTY D
Sbjct: 629 KQLGELLFDTLGLDRKKSRRTKTGWSTDANVLEKLEDDHPVVPLVLEHRTLSKLKSTYVD 688

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
           +LP+ +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+      LI
Sbjct: 689 ALPSLMEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEGWSLI 748

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           SADYSQIELRIL H+     L + + N  D+H + A  +  ++ E V+P  RR  KTINF
Sbjct: 749 SADYSQIELRILTHLCGEEVLVEAYRNGDDVHALTARLL--LDKEAVTPDERRLGKTINF 806

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            +IYG+   R A +  + +S+A D++ RY  R+P +  ++E  +      GYVETI GRR
Sbjct: 807 GVIYGMGAQRFARETGVSQSQAKDFLSRYKQRYPKVFAFLELQERLALSRGYVETILGRR 866

Query: 867 IHYDEINS------------------PKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
             +    S                   +  +     RAA NAPIQGS+ADI + AM+ + 
Sbjct: 867 RPFAFDPSGLGRHLGKDPMEIDLEVARRGGLEAQQLRAAANAPIQGSSADIIKLAMVHLQ 926

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           ++L    L  ++LLQ+HDELV E   E +     +   +ME+A    + L VPL V   V
Sbjct: 927 QALSQQALPARLLLQVHDELVLEAAPEALDQVCDLTRQTMERA----VQLTVPLVVETGV 982

Query: 969 SNNWQEE 975
             NW E 
Sbjct: 983 GPNWMEA 989


>gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803]
 gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803]
          Length = 996

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/1032 (28%), Positives = 477/1032 (46%), Gaps = 101/1032 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           ++  L LVDG S  +R+FYA            DG P +   GF   L     ++ K    
Sbjct: 6   EKPLLLLVDGHSLAFRSFYAFSKGGEGGLATKDGRPTSVTYGFLKALL----DNSKGLKP 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFEA 117
              A+ FD    TFR++   +YKA+R   PE+    L  ++   +    +P     G+EA
Sbjct: 62  EGVAIAFDTAEPTFRHQADANYKAHRDVAPEVFFQDLDQLQTILRERLKLPLCLAPGYEA 121

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIEH 167
           DD++ T    A   G+ V I+S D+DL QLV                  +     I+   
Sbjct: 122 DDVLGTLANRAAGSGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPTLINEAG 181

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ- 226
           V+ K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL+E  +L+ +      ++  
Sbjct: 182 VVAKLGVMPNKVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENNDLDGVYRVLEEVEAE 241

Query: 227 ----------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                        +  +    + A LSR L  +  D+P+      L L   +G  L   L
Sbjct: 242 GPKASRGAVKGALKGKLSADRDNAYLSRHLAEILVDIPLPEEPV-LELGPVDGEGLEEQL 300

Query: 277 KALEFTKLINRVA---TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
           + LE   L+ ++     T+          +L+  T +    A       ++    +  ++
Sbjct: 301 QDLELNSLVRQIPSFVATFSSGGLTANAHLLEEATAKKAKGAPSKAGVAESGEAGTDPAA 360

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS---- 389
               +     E  PQ                      +   + +Q  +Q+L    +    
Sbjct: 361 TGVTSPSTRPELAPQ---------------------VVSTREQLQSLMQQLMGCTNPSEP 399

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +    T  ++ F ++ + I +       D +      +I +      D        + +
Sbjct: 400 VAVDTETTDLNPFKAQLVGIGVCWGAGLSDLA------YIPVGH---TDPALTQLPLEVV 450

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L  L  +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+    H +  +
Sbjct: 451 LEQLAPWLSSPSHPKALQNAKYDRLILLRHGLVLGGVVMDTLLADYLRDAAA-KHSLDGM 509

Query: 509 AQKWLSYTRK---EILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV- 562
           A++    T     +++   K        ++   Q   +   + ++  +L + LR +L   
Sbjct: 510 AERDYGITPTLFSDLVGKAKDGKASCFAEVPSDQAALYCAMDVHLTRRLAIDLRQQLQAS 569

Query: 563 -EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            E+L ++ ++++ P+  V++ ME TGI+ID   L  +S E+ + L  LE +    +G  F
Sbjct: 570 GEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKEMGETLTRLEADAKQAAGVDF 629

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NL+SPKQLG++LF  L        +T    +T   +      D+P++  +LE R LSK+K
Sbjct: 630 NLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLADDHPVVPLVLEHRVLSKLK 689

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+   
Sbjct: 690 STYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQE 749

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+SADYSQIELRIL H++    L Q + +  D+H + A  +  +  + VS   RR  
Sbjct: 750 HWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDDVSADERRLG 807

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KTINF +IYG+   R A +  + +++A +++ +Y  R+P +  ++E  +      GYVET
Sbjct: 808 KTINFGVIYGMGAQRFARETGVSQTDAKEFLSKYRERYPKVFAFLELQERLALSRGYVET 867

Query: 862 IFGRRIHYDEIN------------------SPKSSIRNINERAAINAPIQGSAADITRRA 903
           I GRR  +                      + +  +     RAA NAPIQGS+ADI + A
Sbjct: 868 IMGRRRPFHFDRNGLGRLLGKDPFEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKLA 927

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           MI +  +L+ H L  ++LLQ+HDELV EV    +     ++V +MEKA    + L VPL 
Sbjct: 928 MIQLQAALQQHSLPARLLLQVHDELVLEVEPSALDDVKALVVSTMEKA----VELSVPLV 983

Query: 964 VNIKVSNNWQEE 975
               V +NW E 
Sbjct: 984 AETGVGSNWMEA 995


>gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 976

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/1021 (29%), Positives = 502/1021 (49%), Gaps = 102/1021 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            K+  L LVDG S  +R+FYA            +G P +   GF   L     ++ K   
Sbjct: 8   SKKPILLLVDGHSLAFRSFYAFSKGVDGGLTTKEGFPTSVTYGFLKSLL----DNCKNIN 63

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT-QAFGIPAIEIQGFE 116
           A    + FD    TFR+E+ P+YKANR   P++    +  + +   ++  +P  +  GFE
Sbjct: 64  AEGVCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILKESLNLPIFKSPGFE 123

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----------EKIDIE 166
           ADD++ T    A  +G+ V I+S D+DL QLV     +Y                 ++  
Sbjct: 124 ADDLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNEN 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +K G+ PE++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I      I++
Sbjct: 184 GVKEKLGVYPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYKALDIIQK 243

Query: 227 -----------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
                         RE +      A LSR L  +  +VP+ +      L   N   L   
Sbjct: 244 DEDKKYQGFIKGAVREKLKNDKFNAYLSRDLAKIDVEVPLVLS-NGYELNQINQDALSES 302

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           L+ LE + L+ +V                                  ++      F+  +
Sbjct: 303 LQKLELSTLLRQVD-------------------------------IFNSAFSKGGFNKNN 331

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE-TIGSASFKI 394
           ++  K    +    + LE  +      I       + N K + Q V++LE T    +   
Sbjct: 332 EEKQKKKESKVSASINLEETEH----EIPKIKVNIVNNFKLLDQLVKRLEITKEIVALDT 387

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T++++   ++ + I     ++ +D        +I LS H SQ         +++   L+
Sbjct: 388 ETNSLNPLDAELVGIGFCLGEEINDL------FYIPLS-HQSQKKEMNQLAIEDVFFNLR 440

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL 513
            + E+    K   N K+D+ + + +G+++RG   D +L  Y+L+  +  H ++ I+ +  
Sbjct: 441 SWIESPEKEKTLQNCKFDRQIFYNHGLNLRGVTFDTLLADYILN-NQEKHGLSEISFREF 499

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVYER 571
            +      ++   +     +  +    +   +  +  ++  + + +   E   L  +++ 
Sbjct: 500 GFKPPTFKETVGKNKDFSFVDINDASTYCGYDVLLTFKIAKIFKERFNNENKDLTKLFKE 559

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+S+ME+ GI+ID   L ++S E+   L ++EEN+++++ ++FNLSSPKQLG+
Sbjct: 560 IELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTLENIEENVFEIAKQEFNLSSPKQLGE 619

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL        KT    +T   + +    ++ II  +++ R LSK+ STY D+LPN 
Sbjct: 620 ILFEKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPFLIKHRTLSKLLSTYIDALPNL 679

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           I+++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SADYS
Sbjct: 680 ISEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLSADYS 739

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH+A    L   F  + DIH + A  IF    E ++   RR  KTINF +IYG
Sbjct: 740 QIELRILAHLANEEILINAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFGVIYG 797

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-- 869
           +   + A    +  +EA +++ +Y  R+  I +++E  +      GYVETIFGR+  +  
Sbjct: 798 MGIKKFARSTGVSTTEAKEFLIKYKERYAKIFKFLEFQERLALSKGYVETIFGRKREFKF 857

Query: 870 ----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                           D   + K+ +   + RAA NAPIQGS+ADI + AM+ ++K L +
Sbjct: 858 DKNGLGRLIGKDPYEIDLQTARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKLLE 917

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +  KMLLQ+HDEL+FEV  + +     ++  +ME      + L VPL V+I V NNW 
Sbjct: 918 MNIPVKMLLQVHDELLFEVQPDFLEITKDLVKETMEDC----VKLNVPLLVDIGVGNNWM 973

Query: 974 E 974
           E
Sbjct: 974 E 974


>gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
 gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
          Length = 884

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/988 (31%), Positives = 495/988 (50%), Gaps = 118/988 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K+  L LVDGSS  +RAF++   L+R    +GL  NA+  F  M   +L + +     
Sbjct: 1   MAKQ-KLLLVDGSSLAFRAFFSILDLNRFKNSNGLHTNALYSFHRMFKSILDSEK----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  V +D    TFR E+Y DYK  R K P   + Q+P   +   A+GIP   +  +EAD
Sbjct: 56  THVLVAWDAGKTTFRTEMYADYKGGRSKTPGEFIEQMPYFNVLLDAWGIPHYRLNQYEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGI 174
           DII T     E+ G+ V ++S DKDL+QL      +  T K      +   E + +K+G+
Sbjct: 116 DIIGTLARKGEEAGYEVVVLSGDKDLIQLADNNITVKITTKGVTELVEYTPEVIFEKYGL 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++ ++ L GDS DN PG+  +G KTA  LLQE+G++E I                 
Sbjct: 176 TPEQIIDMKGLMGDSSDNYPGVTKVGEKTAVKLLQEFGSVEGIY---------------- 219

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E+ +  + S+                 L     N   L    K L    + + +  T + 
Sbjct: 220 EHVDEMKKSK-----------------LKENLINDKELAFLSKKLARINVESPIEITLED 262

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                + V   ++                   K   F+S              +    ER
Sbjct: 263 TLRKEQDVDALMSFY-----------------KEMNFNSFQSDLLNSGGATVEEAPKAER 305

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                   I+++                 L++  S  F+ +    +   ++ IA+A    
Sbjct: 306 PTVKRVAQISDN----------------MLKSATSVHFETLEA--NYHVAEVIAVAF--- 344

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                                 ++    +  T       KK+  +    K   + K  K+
Sbjct: 345 -------------------GNEKNVFVTDLDTAVASEVFKKWLSDASVEKHLFDTKAAKV 385

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK----WLSYTRKEILKSRKSSIP 529
           + HR+G  ++G   D+ L++Y++D+     +I+ +A++     LS       K  K  IP
Sbjct: 386 LAHRFGFDLKGAKYDVSLLAYLVDTNDIVKEISDVARRVDVTILSSDEAVYGKGVKIQIP 445

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            DK       +H       I +    L  +L   +  H+Y  ++ P+ D++++MEI GI+
Sbjct: 446 EDK---EVWNQHLAAKVFTIAKAPEKLLKRLEENEQTHLYWEMELPLSDILARMEIQGIR 502

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D++ L ++  E  + L  +E+ IY+L+GE+FN++S KQLG ILF K+  P   KTKTG 
Sbjct: 503 VDRERLVEMGVEFEERLKEIEQEIYELAGEEFNINSTKQLGVILFEKMGLPVIKKTKTGY 562

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +TA D+ +      PI++ ILE+RQL+K+ STY + L  +I +  + +HT +    T 
Sbjct: 563 --STAVDVLEKLAHQAPIVELILEYRQLAKLNSTYVEGLQAYIQEDGK-IHTRFIQNLTQ 619

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PNLQNIPI+T  G++IR AF+      K++S+DYSQIELR+LAHIA    + 
Sbjct: 620 TGRLSSVDPNLQNIPIRTKEGRRIRYAFLPEHDDWKILSSDYSQIELRVLAHIAGDKHMI 679

Query: 769 QVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           + F+N++DIH   A  +FG+ N + V+ +MRR AK +NF I+YGIS + L+  L I R  
Sbjct: 680 EAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQAKAVNFGIVYGISDYGLSQNLNISRKR 739

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A ++I RY   F G+ +++E      R+  YVET+F RR +  +I+S   ++R+  ER A
Sbjct: 740 AKEFIDRYLEEFQGVKDFMESIVKEAREKDYVETLFHRRRYLPDIHSSNFNLRSFAERTA 799

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N+PIQGSAADI + AMI + + + + K    +LLQ+HDEL+FEVP++E+ +   ++   
Sbjct: 800 MNSPIQGSAADILKMAMIELDREMRERKFKANLLLQVHDELIFEVPQDELESLQSLVEGV 859

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ME A    ++L+VPL+ +  V +NW E 
Sbjct: 860 MENA----VSLKVPLRADSNVGDNWFEA 883


>gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 928

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/982 (28%), Positives = 455/982 (46%), Gaps = 83/982 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +   L L+DG S  +RAF+A P        G   NA+ GF +ML KLL++       +H 
Sbjct: 19  RRPRLLLLDGHSMAFRAFFALPVDKFGTSTGQSTNAVYGFASMLVKLLRDEE----PTHV 74

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFR+E Y +YK  R   P     Q+PL +   +  G+  +   GFEADD+I
Sbjct: 75  AVAWDLSGPTFRHEEYAEYKDGRSDTPPEFPSQVPLTQDLMRLIGVANLSAPGFEADDVI 134

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT  +   + G  V I S D+D  QLV+ +  +    K      ++D   V  K+G+ PE
Sbjct: 135 ATLAHQGGEAGMEVLIASGDRDAFQLVTDSCTVLYPGKSLSDLRRMDPAAVEDKYGVTPE 194

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +   L AL G+  DN+PG+PG+G KTAA  + +YG+L+ ++ +A  +   K  ++  ++ 
Sbjct: 195 RYRDLAALVGEKADNLPGVPGVGPKTAAKWITKYGSLDELVAHADELTG-KAGQSFRDHL 253

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +    +++L                                       NR+AT  + DA 
Sbjct: 254 DDVLRNQRL---------------------------------------NRLATDVELDAE 274

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                + + + T    +    E   +   +      L +  S     +  +   +E    
Sbjct: 275 VTALALGEADRTGIDALFDNLEFASNLRERLYAVVRLPEDGSGETGTEAVEGFRVEL--- 331

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        +  T ++  W+        A+   +T T       P  +A+     +
Sbjct: 332 ------------TVAGTGELAPWLAAHAAPDDAASDTLTPT------APAGLALDGAWGQ 373

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    I +        D T  +    E L+    F  +    K  H  K   L L 
Sbjct: 374 GTGRVDALAISVPSGDAVFVDPTALDPADTEALA---DFLADPRRPKAVHEYKGALLALG 430

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI--DKIS 534
            +G  + G   D  L +Y++  G+   D+A + +K+L    +E     + ++ +  +  +
Sbjct: 431 AHGWELGGVVSDTALAAYLVQPGQRRFDLADLCRKYLGRELEEDSSGDQLTLDLGGEDGA 490

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            S  Q      ++    L  +L  +L      H+   ++ P++DV++++E  GI  D+  
Sbjct: 491 GSGRQHLLAVRASATRDLAGVLSAELDKRGGTHLLHEVELPLVDVLARLERAGIAADRPY 550

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+++  E +       E  +++ G +FNL SPKQL  +LF  L  P   K KTG      
Sbjct: 551 LEELQGEFAAAGRVAVERAHEIVGREFNLGSPKQLQQVLFEDLGLPRTKKIKTGYTTDAD 610

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                 +  DN +   +L  R  +K+++T  + L   +     R+HT ++     TGRL+
Sbjct: 611 ALAWLASQTDNELPAVLLHHRDQTKLRTT-VEGLIKTV-ADDGRIHTTFNQTVAATGRLS 668

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIP++TD+G++IRRAF+     + L++ADYSQIELRI+AH++    L   F +
Sbjct: 669 STDPNLQNIPVRTDVGRRIRRAFVVGEGYEELLTADYSQIELRIMAHLSGEQALIDAFNS 728

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D H  +AA+IF V +E+V  + R   K +++ + YG+S + L+ QL I   E+   ++
Sbjct: 729 GYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSYGLAYGLSAYGLSQQLGITPEESKRLME 788

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  F G+ +Y+       R+ GY ETI GRR +  ++ S     R + ER A+NAPIQ
Sbjct: 789 DYFAEFGGVRDYLNAMVEEARRVGYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQ 848

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ V  +L +  L +++LLQ+HDELV EV   E      I+   M  A  
Sbjct: 849 GSAADIIKVAMLRVDAALTEGGLTSRVLLQVHDELVVEVAPGERAEVENIVAREMSSA-- 906

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
              +LRVPL V++    NW + 
Sbjct: 907 --YDLRVPLAVSVGSGQNWHDA 926


>gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
 gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
          Length = 882

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/981 (29%), Positives = 486/981 (49%), Gaps = 122/981 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG S + RAF+  P L+   +GL  NAI GF N+++K+L+  + E    +  V F
Sbjct: 12  KIVLIDGHSILNRAFFGLPDLTNA-EGLHTNAIYGFLNIMFKILEEEKPE----YLTVAF 66

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++++  YK  R  + E L  Q+PL++    A GI  IE +G EADD++ T +
Sbjct: 67  DVHAPTFRHKMFEAYKGTRKPMAEELRQQVPLMKEVLHAMGIRTIEQEGLEADDLLGTLS 126

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
              E+ G  V IIS D+DL+QL +    +     +      E      V +K+ + P + 
Sbjct: 127 KRCERMGMEVVIISGDRDLLQLATDHVEIRIPKTKRTGTEIENYYAVDVKEKYQVTPTEF 186

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PG+G KTA  ++ EYG++EN   +AS +K  +           
Sbjct: 187 IDVKALMGDTSDNIPGVPGVGEKTATKIIVEYGSIENAYKHASELKPPRA---------- 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ LV                                     +++V  T D DA   
Sbjct: 237 ---SKNLV------------------------------EYWDQAQMSKVLATIDVDA--- 260

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                D    ++ ++  +L  + + +  ++   K  L R    S
Sbjct: 261 ---------------------DFAYELEEAKLGNLYTEEAYVYFQRLQFKNLLNRFDVQS 299

Query: 360 QYPINNDSYTKIVNTKDIQQWVQ--KLETIGSASFKIITDTMDAF--HSKPIAIAISTLD 415
           +  I +     +   +  + + +  K +T+G+  +K   + +  F  +++   I IS   
Sbjct: 300 ENSIEDAFVIAVGKEEIQKIFAEAEKAQTVGAVLYKDTRNVLPLFAENAEIGGIGISFGK 359

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +K                       G     +E+L  L           +  ++K     
Sbjct: 360 EKIYCIPA-----------------GNGYSMEELLEALVHV-AKHAGRFVVFDLKSSLPY 401

Query: 476 LHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L    G +     D ++ +Y+L+  ++ +    +AQ+ L                     
Sbjct: 402 LKGLEGAAEEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLMID---------------P 446

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            +++++     +        +L  KL  E++  ++  ++ P++  +  ME  G++++ + 
Sbjct: 447 KTELEKMVCYEAYAAFASSEVLEEKLKKEEMWKLFTEIEMPLVFTLFHMEQNGVRVEAEE 506

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK    ++   ++ LE+ IY+L+GE+FN++SPKQLG +LF  L  P+G KTKTG   +TA
Sbjct: 507 LKSYGEQLGGKIVQLEKEIYELAGEEFNINSPKQLGVVLFEHLSLPNGKKTKTGY--STA 564

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+      D PI+  ILE+RQL+K+KSTYAD L   I++   R+H  ++   T TGR++
Sbjct: 565 ADVLDKLAPDYPIVAKILEYRQLAKLKSTYADGLAVFIHEDDHRIHGKFNQTVTATGRIS 624

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP + +LG+ IR+ F+       + ADYSQIELR+LAH +    L + +  +
Sbjct: 625 STEPNLQNIPARVELGRLIRKVFVPEEGYVFVDADYSQIELRVLAHCSGDAALIEAYREA 684

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR+ A+++F    ++V+   RR+AK +NF I+YGIS F L+  L I R EAA+YI R
Sbjct: 685 KDIHRITASQVFHTPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEYIDR 744

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PGI ++++      ++ GYV T+FGRR    E++S     R   ER A+N+PIQG
Sbjct: 745 YFETYPGIKKFLDDAVAHAKEQGYVVTLFGRRRPVPELSSSNFMQRQFGERVAMNSPIQG 804

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI+V K L    + ++++LQ+HDEL+ E  +EE     +I+   M  A   
Sbjct: 805 TAADIMKIAMIAVDKELRMRNMKSRLVLQVHDELLIETWKEEEEEVREILKEGMMHAA-- 862

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
             +L VPL++++    NW E 
Sbjct: 863 --DLSVPLEIDMHSGKNWYEA 881


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/975 (31%), Positives = 494/975 (50%), Gaps = 97/975 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++D   F +R++YA P L  K  G P   + GF N +  L+   R +    +     
Sbjct: 3   TLTIIDTFGFFFRSYYALPPLKSKK-GFPTGLLTGFINFINSLVSEERSD----YIVFAL 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR +I  +YKA RP+ PE L  QLP+     Q  G   +  +GFEADDIIA+  
Sbjct: 58  DSEGPSFRAKIDSEYKAQRPEPPEELKMQLPVAIKWIQEMGFKTLAKEGFEADDIIASLV 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             A+++G  V I+S DKDL QL+      LYD +K+E+ID E   KK+GIPP+ +    A
Sbjct: 118 KCAKEQGIKVKIVSHDKDLYQLIDDGKVVLYDPIKKEEIDEEKATKKFGIPPKLIKDYLA 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+ GIG KTA  LL+++G+LE I  +   +K ++ ++ ++E  E A LS+
Sbjct: 178 LVGDSADNIPGVKGIGPKTAVKLLEQFGSLEGIYEHLDEVKPERIKKLLIEGKEKAFLSK 237

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           KLV L  +V      +H  L+  + P +            I       D D   I   + 
Sbjct: 238 KLVELDENV-----FDHCNLQQFHLPSINPI---------IKIADELIDYDITAILRKIK 283

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                ++K  +++ E                                           I 
Sbjct: 284 AAPLQQSKKQSVQFEA------------------------------------------IC 301

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            D+Y K++        +Q +      +F   TD +D   +  +  + +  ++K       
Sbjct: 302 LDTYDKLIKA------IQSIPEGALVAFDTETDDLDTKKANLVGFSFAYSEEK------- 348

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-SM 483
              ++ +  +      G      + L  + K FE      IGHN+K+D  +L+RYGI   
Sbjct: 349 -AYYVPIGHNYL--GVGDQVGLDKALEAISKIFE---HTIIGHNLKFDLSLLYRYGIDEK 402

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           +   D M++++++D G SS  + S+A+++L +      ++ K      ++S     ++A 
Sbjct: 403 KDIVDTMILAWLVDPG-SSVGLESVAKRFLDHDMIAYKETVKKGEDFSQVSIDAACKYAS 461

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYER---LDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           E++ +   ++  L   L  +   H+ +    ++ P ++ +  ME  GI+ID    +++ +
Sbjct: 462 EDAVITYMVYFKLLDALRKQGASHLIDEAKKVEFPFVNTLIHMEQAGIKIDIPFFEELKS 521

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            + K +  + + IY+ +G +FN++S KQL  ILF KLK P   KTK+G   +T +   Q 
Sbjct: 522 SLEKRIDEITQKIYEYAGGEFNINSTKQLAAILFEKLKLPPLKKTKSGY--STNETTLQA 579

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-QRVHTFYSLASTMTGRLASLEPN 719
               +PII  +LE+R+L K+KSTY D L N+  +    R++T +    T TGRLAS  PN
Sbjct: 580 LKDKHPIIPLLLEYRELYKLKSTYIDPLINYAKRDPKHRIYTSFIQTGTATGRLASKNPN 639

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIKT+LG+KIR  FI+   + LI  DYSQIELR+LAH +K   L + F+   DIH 
Sbjct: 640 LQNIPIKTELGRKIRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQKGRDIHM 699

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A ++FG    + + + R  AK+INF +IYG+   +LA  L I   EA   I+ YF  F
Sbjct: 700 ETAIKLFGK---EHAKEKRNIAKSINFGLIYGMGSRKLAETLGISTKEAKAIIESYFASF 756

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +  Y+E  +NF + +GYVET+  RR ++D  ++  + +     R A N   QGSAAD+
Sbjct: 757 PTVKSYLESVENFAKTHGYVETLLKRRRYFDFAHASGAQL-AAYLREATNTVFQGSAADL 815

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM  +   +++ +L  K+LLQIHDEL+FEV E +    ++     M+        L 
Sbjct: 816 IKMAMNKIKNVIDEKQLEAKILLQIHDELIFEVQENQAQELAEEFKQIMQ----TIHPLN 871

Query: 960 VPLKVNIKVSNNWQE 974
           VP++ +++++ NW +
Sbjct: 872 VPIECSVQIARNWGD 886


>gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
 gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
          Length = 887

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/986 (32%), Positives = 510/986 (51%), Gaps = 116/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  ILVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    EK GF  T+++ D+DL QL SP+T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFVDKGEKNGFTTTVVTGDRDLTQLASPSTTVEVTKSGVSQLEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++  
Sbjct: 179 TEFIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRD 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +                                              + +   T D D+
Sbjct: 239 KD-------------------------------------------KAFLAKKLATIDRDS 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV LDI+  + + +  E        +   +F  L+D  +    + + +   +E   
Sbjct: 256 ----PVTLDIDDIKRQPVDYEKLRQFYEKMNFRKF--LADLNASGAGQDSTEVEKVE--- 306

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++N  +++    K     +  F +     +   +  +  ++   D+
Sbjct: 307 ------------YIVLNDDNVKDV--KATEDDTIEFYLEMLGANYHLAPFVGFSLKITDK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         + V    +   ++         +K   E+E   K   ++K   +  
Sbjct: 353 --------------IYVSRDVELLEEDN--------IKHILEDEKIKKNVFDLKRTMVAA 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR  I   G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    KS  IP D
Sbjct: 391 HRLDIHTHGLDYDMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++  H     N I  L   L  KL   +   ++E ++ P   V+++ME+ G++++
Sbjct: 451 ---DDELFNHLASKINAIESLKKPLLEKLKDHEQDDLFETIEIPTARVLARMEMNGMKVE 507

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  E +  L  LE+ IY  +GEKFNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 508 ASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPPIKKTKTGY-- 565

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQSDG-RVHTRYLQTLTATG 624

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 625 RLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEA 684

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 685 FKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQ 744

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I EY++K     R+ GY ETI  RR +  +I++ K ++R+  ER AIN
Sbjct: 745 EFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTAIN 804

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TK+++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 805 SPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKKIVPEVMQ 864

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 865 SA----VKLDVPLIADSGWGHNWYDA 886


>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 906

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/981 (29%), Positives = 473/981 (48%), Gaps = 102/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q +  L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H
Sbjct: 15  QTKPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----TPTH 70

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR+E YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+
Sbjct: 71  VAAAFDVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAEPGFEADDL 130

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE EGF V +++ D+D +QLVS    +    K      +   E V++K+G+ P
Sbjct: 131 IATLATQAEHEGFRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTP 190

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++ N   ++  K  + +   
Sbjct: 191 TQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQGLVDNVDSVRG-KVGDALRAN 249

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                 +R+L    TD+   +PL     +  +  R+  +         I+R+    +   
Sbjct: 250 LAGVIRNREL----TDLVKDVPLA----QTPDTLRMQPW-----DRDQIHRLFDDLEF-- 294

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V+ D        +  E +   D      Q   L++                    
Sbjct: 295 ----RVLRDRLFETLAAVEPEVDAGFDVRGGALQPGELAE-------------------- 330

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                                  W+ +          ++   + A+ +   A+AI + D 
Sbjct: 331 -----------------------WLAEHSAGKRFGLAVVGTHL-AYDADATALAIVSADG 366

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          +ID S     D            + L  +  +    K  H  K     L
Sbjct: 367 EG--------RYIDTSALQPDDE-----------AALASWLADPGPPKALHEAKLAMHDL 407

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPID-KI 533
              G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E  + ++ S+  D   
Sbjct: 408 AGRGWTLAGVTSDTALAAYLVRPGQRSFSLEDLSLRYLRRELRAETAEQQQLSLLDDNDG 467

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +D Q  +  I  +  +L L   L  +L       +   ++ P+  V++ ME TGI +D +
Sbjct: 468 TDDQAVQTLILRAVAVLDLADALDEELARINSTSLLGGMELPVQRVLAGMEHTGIAVDLE 527

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L+ P   +TKTG     
Sbjct: 528 LLGELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQTVLFDELEMPKTKRTKTGYTTDA 587

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                  +   +P ++++L  R ++++K T  D L   +     R+HT ++     TGRL
Sbjct: 588 DALQSLFDKTGHPFLQHLLTHRDVTRLKVT-VDGLLASVASDG-RIHTTFNQTIAATGRL 645

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+AH+++   L + F 
Sbjct: 646 SSTEPNLQNIPIRTEAGRRIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFN 705

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  VA+  FGV I +V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +
Sbjct: 706 TGEDLHSFVASRAFGVPIGEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQM 765

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF G+ +Y+    +  R++GY  T+ GRR +  E++S    +R   ERAA+NAPI
Sbjct: 766 DAYFARFGGVRDYLMNIVDQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPI 825

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI V K++++  L ++MLLQ+HDEL+FEV   E      +    M  A 
Sbjct: 826 QGSAADIIKVAMIEVDKAIKEAGLKSRMLLQVHDELLFEVAPGERERLEALAREKMGGA- 884

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
                L VPL+V++    +W 
Sbjct: 885 ---YPLDVPLEVSVGYGRSWD 902


>gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 873

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/979 (32%), Positives = 495/979 (50%), Gaps = 115/979 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
                ++DGSS I+RAF+A P  + K  G+   A+ G CNML KLL+  +     S+ AV
Sbjct: 2   NETFLIIDGSSLIHRAFFALPSFTNKK-GVNTGAVYGLCNMLLKLLEEVK----PSYMAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR E + DYK  R   P  L  Q PL      + GIP +E+  +EADD+I T
Sbjct: 57  AFDKSRHSFRTEKFADYKGQRKATPPELKEQFPLAIELLTSMGIPTLEMDNYEADDLIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
            +  A KE   V I++ D+D  QL+     +Y T K        D     K++ G+ P +
Sbjct: 117 LSATAPKE-MKVIIVTGDRDEFQLIKENVHVYFTKKGITQIGNYDEAAFQKEYEGLSPRQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+ L GD+ DNIPG+PG+G KTA  L++EY ++E +L +A  +K K  +E ++ +  
Sbjct: 176 IIDLKGLMGDTSDNIPGVPGVGPKTALKLIKEYQSVEAVLDHAEEVKGKSLKEKLITFRN 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS++L  +   VP+        L      +    +  L+F  + NR +         
Sbjct: 236 QALLSKELATICLTVPMDTDPASYRLTGL-TEKSRVLMDDLQFKNMWNRFSPVLGLADGV 294

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +         +   +++  E+  +   +T   +SL   T+           FL R+++ 
Sbjct: 295 SKA-------QDGGEMSMFGEVIAEDAYETVPLASLEAATA-----------FLTRVKEG 336

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           S                               S    T+ +         + +++L    
Sbjct: 337 SAP----------------------------LSLMYETEGLLPH------LTLTSLSGAH 362

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
           D    V                  N L       +KK   N          K     +  
Sbjct: 363 DHKVYVW---------DKALLNDANMLALLCDGAIKKIVPNP---------KELYKFMQG 404

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G+S++G   D  L +Y+ + G + +D+ S+A+ +L                        
Sbjct: 405 KGVSLQGVIGDPSLAAYLYEPGETHYDVKSLAETYLP----ASCGG-------------- 446

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                 ++   ++    +L   +    L  +Y  ++ P+  V++ ME+ GI +D+ +L +
Sbjct: 447 ----TAQDVEALM---PVLEGLMAERGLTELYRDIELPLTKVLANMEVNGITLDKGMLDE 499

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           V+  ++K +  LE+   + +GE FN++SPKQLG ILF KL  P   KTK+G + T    L
Sbjct: 500 VTKSMTKQVADLEQKAKEEAGEDFNVNSPKQLGVILFEKLGLPIIKKTKSG-YSTDVSVL 558

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           EQ+  G++PII+ I+E+R LSK+ STY  +L   IN  T R+HT ++  +T+TGRL+S +
Sbjct: 559 EQLQ-GEHPIIETIMEYRTLSKLLSTYLVALHPLINPNTGRIHTHFNQMATVTGRLSSTD 617

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP +T++G+++RR F+       L+S DYSQ+ELR++A IA    L   F +  D
Sbjct: 618 PNLQNIPTRTEVGKQMRRMFVPGKGYDLLMSCDYSQVELRVMASIAGDERLIDAFRHGQD 677

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+EIFGV IE V+P MR  AKT+NF IIYGIS F L  QL +PRSEAA YI  YF
Sbjct: 678 IHSRTASEIFGVPIEDVTPFMRSKAKTVNFGIIYGISDFGLGRQLGVPRSEAAQYIDSYF 737

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+ G+ EY+E  K   R+ GYVET+FGRR +  +I++   + R+  ER AIN PIQG+A
Sbjct: 738 ARYTGVKEYMEGEKKKAREMGYVETLFGRRRYLPDIHAKNFNRRSFAERTAINTPIQGTA 797

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V K L++  + +++LLQ+HDELV EV EEE    S I+ ++ME+A    +
Sbjct: 798 ADIIKIAMLHVAKELKEAGVKSRVLLQVHDELVLEVVEEEKDKVSAIVKNAMERA----V 853

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L+VPL  +I     W + 
Sbjct: 854 TLKVPLVADIAFGKTWADA 872


>gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311]
 gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311]
          Length = 994

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/1029 (28%), Positives = 479/1029 (46%), Gaps = 97/1029 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
             +  L LVDG S  +R+FYA            +G+P +   GF   L    +  +  S 
Sbjct: 5   SDQPLLLLVDGHSLAFRSFYAFSKGGEGGLATKEGIPTSVTYGFLKALLDNCKGLKPNS- 63

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ-AFGIPAIEIQGFE 116
                + FD    TFR++  P+YKA+R   P      L  ++        +P     GFE
Sbjct: 64  ---VTIAFDTAEPTFRHKADPNYKAHRDVAPAHFFQDLEQLQAILTTQLKLPLCLAPGFE 120

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIE 166
           ADD++ T    A  +G++V I+S D+DL QLV  +               +     ID  
Sbjct: 121 ADDVLGTLANRAAADGWSVRILSGDRDLFQLVDDSRNIAVLYMGGGPYAKSSGPTLIDEA 180

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V  K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL++  +L+ +    + +++
Sbjct: 181 GVQAKLGVAPTKVVDLKALTGDSSDNIPGVKGVGPKTAISLLKDNDDLDGVYRALAEVEE 240

Query: 227 -----------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
                         +  +    + A LSR L  +  D+P+      L L   +G  L   
Sbjct: 241 EGPKASRGAIKGALKAKLANDKDNAYLSRHLAEILVDIPLPKEP-KLDLGSVDGDGLSQR 299

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           LK LE   LI +V         N            N  +  + E ++ T    +  S+  
Sbjct: 300 LKELELNSLIRQV--------PNFVATFSSGGLAANAHLLAKAEEEQRTVKDEAATSAQP 351

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI----GSAS 391
                I+   + Q   + R                +     ++  + +L          +
Sbjct: 352 SGPEAISEASSSQTQPVLRPG-------------IVQTLDQLKALLTQLMNCRDPLAPVA 398

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
               T  ++ F ++ + I +      DD ++        + V    D        + +L 
Sbjct: 399 LDTETTDLNPFRAQLVGIGMCWGPGSDDLAY--------IPVSHQGDPIPDQLPLETVLQ 450

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ 510
            L  +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+    H + ++AQ
Sbjct: 451 ALAPWLASGEHPKALQNAKYDRLILLRHGLPLAGVVMDTLLADYLRDAAA-KHGLDAMAQ 509

Query: 511 KWLSYTRK---EILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--E 563
           +    +     +++   K   +    ++      ++   + ++  +L + L  +L     
Sbjct: 510 RDYGISPTLFSDLVGKAKEGKASNFSEVPLESAAQYCGMDVHLTRKLAIDLNQQLEALGP 569

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           +L ++  +++ P+  V++ ME TGI+ID   L+ +S EI  NL  LE +  + +   FNL
Sbjct: 570 QLPNLLSKVELPLEPVLAVMEATGIRIDVPYLEALSCEIGTNLERLEASAKEAAEIDFNL 629

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLGD+LF  L        +T    +T   + +    D+P++  +LE R LSK+KST
Sbjct: 630 ASPKQLGDLLFNTLGLDRKKSRRTKTGYSTDATVLEKLEHDHPVVPLVLEHRVLSKLKST 689

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           Y D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+     
Sbjct: 690 YVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQDGW 749

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+SADYSQIELRIL H++    L Q + +  D+H + A  +  ++ ++VSP  RR  KT
Sbjct: 750 TLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LDKDEVSPDERRLGKT 807

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           INF +IYG+   R A +  + +SEA D++ +Y  R+P +  ++E  +      GYVETI 
Sbjct: 808 INFGVIYGMGAQRFARETGVSQSEAKDFLSKYKQRYPKVFAFLELQERLALSQGYVETIL 867

Query: 864 GRRIHYDEIN------------------SPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           GRR  +                      + +  +     RAA NAPIQGS+ADI + AM+
Sbjct: 868 GRRRPFHFDRNGLGRLNGMDPLEINLEVARRGGMEAQQLRAAANAPIQGSSADIIKLAMV 927

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            +   LE   L  ++LLQ+HDELV E   E +    +++V +M+ A    I+L VPL+V 
Sbjct: 928 QLQAKLESKNLPARLLLQVHDELVLETEPEALAVVEELVVQTMKNA----IDLSVPLEVE 983

Query: 966 IKVSNNWQE 974
                NW E
Sbjct: 984 TGNGANWME 992


>gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
 gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
          Length = 976

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/1021 (29%), Positives = 508/1021 (49%), Gaps = 102/1021 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
            K+  L LVDG S  +R+FYA            +G P +   GF   L     ++ K+  
Sbjct: 8   SKKPVLLLVDGHSLAFRSFYAFSKGVDGGLTTKEGFPTSVTYGFLKSLL----DNCKKVS 63

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT-QAFGIPAIEIQGFE 116
           A    + FD    TFR+E+ P+YKANR   P++    +  + +   ++  +P  +  GFE
Sbjct: 64  AEGVCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILKESLNLPIFKSPGFE 123

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----------EKIDIE 166
           ADD++ T    A  +G+ V I+S D+DL QLV     +Y                 ++  
Sbjct: 124 ADDLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNEN 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +K G+ P+++V L+ALTGDS DNIPGI G+G KTA  LL+E   L+ I      I++
Sbjct: 184 GVKEKLGVYPDRVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYKTLDIIQK 243

Query: 227 ---KKRR--------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
              KK +        E +      A LSR L  +  +VP+ +      L + N   L   
Sbjct: 244 NEDKKYQGFIKGAVMEKLKNDKFNAYLSRNLAKIDVEVPLVLN-NGYELNEINQDSLSES 302

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           LK LE + L+ +V                              +I      K     +  
Sbjct: 303 LKKLELSTLLRQV------------------------------DIFNSAFSKGGFNKNNE 332

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE-TIGSASFKI 394
           ++     S+ +P     E   KL +  +N      + +++ + Q V++LE T    +   
Sbjct: 333 EKHKDKESKDSPSTDLEEIENKLPKIKVN-----IVNDSESLDQLVKRLEITKEIVALDT 387

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            T++++   ++ + I     ++ +D        +I L   + +D        +++   L+
Sbjct: 388 ETNSLNPLDAELVGIGFCLGEESNDL------FYIPLGHQSQKDEM-NQLAIEDVFLNLR 440

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL 513
            + E+    K   N K+D+ + + +G+++ G   D +L  Y+L+  +  H ++ I  +  
Sbjct: 441 TWIESPEKEKTLQNCKFDRQIFYNHGLNLSGVTFDTLLADYILN-NQEKHGLSEICFREF 499

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVYER 571
            +      ++   +     +  +    +   +  +  ++  + + +   EK  L  +++ 
Sbjct: 500 GFKPPSFKETVGKNKDFSFVDINHASIYCGYDVFLTYKIAKIFKERFRKEKKELTKLFKE 559

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+S ME++GI ID   L ++S E+   L ++EEN+++++ ++FNLSSPKQLG+
Sbjct: 560 IELPLEQVLSGMEMSGISIDITYLNELSRELKSTLANIEENVFEIAKQEFNLSSPKQLGE 619

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KL        KT    +T   + +    ++ II  +++ R LSK+ STY D+LPN 
Sbjct: 620 ILFDKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPYLIKHRTLSKLLSTYIDALPNL 679

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           INK+T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SADYS
Sbjct: 680 INKKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLSADYS 739

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRILAH+A    L   F  + DIH + A  IF    + ++   RR  KTINF +IYG
Sbjct: 740 QIELRILAHLANEEILITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINFGVIYG 797

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-- 869
           +   + A    +  +EA +++ +Y  R+  I +++E  +      GYVETIFGR+  +  
Sbjct: 798 MGIKKFARSTGVSTTEAKEFLIKYKKRYAKIFKFLELQERLALSKGYVETIFGRKREFKF 857

Query: 870 ----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                           D   + K+ +   + RAA NAPIQGS+ADI + AM+ ++K L +
Sbjct: 858 DKNGLGRLIGKEPYEIDLQTARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKLLE 917

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +  KMLLQ+HDEL+FEV  + +    Q++  +ME      + L+VPL V+I V NNW 
Sbjct: 918 MNIPVKMLLQVHDELLFEVKPDFLEITKQLVKETMEDC----VKLKVPLLVDIGVGNNWM 973

Query: 974 E 974
           E
Sbjct: 974 E 974


>gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS]
 gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS]
          Length = 920

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/980 (29%), Positives = 469/980 (47%), Gaps = 102/980 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +  L L+DG+S  YRAFYA P  + +   GL  NA+ GF  ML  LL++ +     SH 
Sbjct: 30  DKPTLMLLDGNSLAYRAFYALPAENFKTQGGLTTNAVYGFTAMLINLLRDEQ----PSHV 85

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A  FD    TFR + YP+YKA R   P+    Q+ + +    A GI  +   GFEADDII
Sbjct: 86  AAAFDVSRQTFRVDKYPEYKAGRSSTPDEFRGQIDIAKEVLVALGIAVLAEPGFEADDII 145

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE EG+ V +++ D+D +QLVS    +    K      +   + V +K+G+ P+
Sbjct: 146 ATLATQAEGEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSDLTRFTPDAVQEKYGLTPQ 205

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPG+G KTA   + EYG+L+ ++ N  ++K  K  + +    
Sbjct: 206 QYPDFAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQALVDNVDQVKG-KVGDALRANL 264

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
               L+R+L  L  DVP+            +  R+  +         ++R+    +    
Sbjct: 265 SHVVLNRELTDLVKDVPLPHT--------PDTLRVQPW-----DRDQLHRLFDDLEF--- 308

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V+ D        +  E E   D   K  +   L+                      
Sbjct: 309 ---RVLRDRLFETLAAVEPEVEHGFDVRGKALERGELA---------------------- 343

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                                 W+ +          ++   + A+ +   A+AI   D  
Sbjct: 344 ---------------------AWLSEHSLGNRFGLAVVGTHL-AYDADATALAIVAADGD 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     +L  +  + L  +  +    K  H  K     L 
Sbjct: 382 GRY-------------------IDTTSLDPDDEAALASWLADPGPPKALHEAKLAMHDLA 422

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G  + G   D  L +Y++  G+ S  +  ++ ++L    +    +++    +D     
Sbjct: 423 GRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRADNPAQQQLSLLDDSDGG 482

Query: 537 --QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q  +  I  +  +L L   L  +L       +  R++ P+  V+++ME TGI +D D 
Sbjct: 483 DDQAVQTLILRAVAVLDLADALDEELARIDSSSLLGRMELPVQRVLAEMEHTGIAVDIDQ 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+Q+ +E +  +    E  Y + G++ NL SPKQL  +LF +L+ P   +TKTG      
Sbjct: 543 LRQLQSEFADLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELEMPKTKRTKTGYTTDAD 602

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                 +   +P ++++L  R  +++K T  D L N +     R+HT ++     TGRL+
Sbjct: 603 ALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDG-RIHTTFNQTIAATGRLS 660

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIPI+T+ G++IR AF+       +++ADYSQIE+RI+AH+++   L + F  
Sbjct: 661 STEPNLQNIPIRTEAGRRIRDAFVVGDGYTEVMTADYSQIEMRIMAHLSQDAGLIEAFNT 720

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  VA+  F V I++V+P +RR  K +++ + YG+S + LA QL+I   EA   + 
Sbjct: 721 GEDLHSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAYGLSAYGLAAQLKISTEEAKVQMD 780

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF RF GI +Y+    +  R++GY  T+FGRR +  E++S   ++R   ERAA+NAPIQ
Sbjct: 781 QYFARFGGIRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRNVREAAERAALNAPIQ 840

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AMI V ++++D  L+++MLLQ+HDEL+FEV + E  T  +++   M  A  
Sbjct: 841 GSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSAYA 900

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
               L VPL+V++    +W 
Sbjct: 901 ----LDVPLEVSVGYGRSWD 916


>gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
          Length = 887

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/986 (32%), Positives = 510/986 (51%), Gaps = 116/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  ILVAFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    EK GF  T+++ D+DL QL SP+T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFVDKGEKNGFTTTVVTGDRDLTQLASPSTTVEVTKSGVSQLEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+  +   +K+ KR+E ++  
Sbjct: 179 TEFIDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRE 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +                                              + +   T D D+
Sbjct: 239 KD-------------------------------------------KAFLAKKLATIDRDS 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV LDI+  + + +  E        +   +F  L+D  +    + + +   +E   
Sbjct: 256 ----PVTLDIDDIKRQPVDYEKLRQFYEKMNFRKF--LADLNASGAGQDSTEVEKVE--- 306

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++N  +++    K     +  F +     +   +  +  ++   D+
Sbjct: 307 ------------YIVLNDDNVKDV--KATEDDTIEFYLEMLGANYHLAPFVGFSLKITDK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                         + V    +   ++         +K   E+E   K   ++K   +  
Sbjct: 353 --------------IYVSRDVELLEEDN--------IKHILEDEKIKKNVFDLKRTMVAA 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR  I   G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    KS  IP D
Sbjct: 391 HRLDIHTHGLDYDMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++  H     N I  L   L  KL   +   ++E ++ P   V+++ME+ G++++
Sbjct: 451 ---DDELFNHLASKINAIESLKKPLLEKLKDHEQDDLFETIEIPTARVLARMEMNGMKVE 507

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  E +  L  LE+ IY  +GEKFNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 508 ASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLNSPKQLGHILFEKLGLPPIKKTKTGY-- 565

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQSDG-RVHTRYLQTLTATG 624

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 625 RLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEA 684

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 685 FKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQ 744

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I EY++K     R+ GY ETI  RR +  +I++ K ++R+  ER AIN
Sbjct: 745 EFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTAIN 804

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TK+++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 805 SPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKKIVPEVMQ 864

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 865 SA----VKLDVPLIADSGWGHNWYDA 886


>gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
 gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
          Length = 908

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/977 (33%), Positives = 505/977 (51%), Gaps = 79/977 (8%)

Query: 7   LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L+L+D  + I+R ++     PLL+ +  G  VNA  GF   L+ ++    KE    H  +
Sbjct: 4   LYLIDALNIIFRNYHVMKNYPLLNTR--GENVNAFIGFFKTLFFII----KEKNPKHLII 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP+YKA R   P+ L+PQ+  ++       IP  EI+G+EADD++A+
Sbjct: 58  TFDSEIPTFRKQKYPNYKATRDAPPDDLIPQIGWIKEGLLKAKIPIFEIEGYEADDLLAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVC 181
           +   A K  +   IIS DKDL+Q +S    +         ++D E+VIKK+GI   ++  
Sbjct: 118 FAKKAAKNNYLTYIISPDKDLLQTMSEHIKILKIENNSFVEMDNEYVIKKFGINSFQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E +++  E A 
Sbjct: 178 YLAIVGDRSDNIPGIKGIGPKGAANLLREFKTLKGIYSNLELI-SKKHQEILIKEKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  LV L  D+ I   +E+  L++ +   LIS  +      LI     TY  D    E 
Sbjct: 237 LSYDLVSLEEDLKIP-EIENFSLKNFSKE-LISLFEKHSAISLIK----TYKKDILKQE- 289

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                +   + S F+               Q+   + L  L+  
Sbjct: 290 --------------------EENVAQKSLFT---------------QEPIADNLDTLNTI 314

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              N  Y  I   K++   ++ L+     S    T ++D + ++ I I+IS  + +    
Sbjct: 315 DTENVKYHSITTKKELDNLIESLKKAKYISIDTETSSLDIYTARLIGISISFKEFEG--- 371

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                 +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L   G
Sbjct: 372 -----YYIPI------EAKGKIYIEKHYIIQKFNNLFES-NPKIIGQNYKFDYKILKNNG 419

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
            S +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS     
Sbjct: 420 FSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMAT 478

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            ++ E++++  +L+ +   KL  + L  +   ++ P  +V+ +ME  GI +D++ LK+  
Sbjct: 479 SYSSEDADITFRLFNIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYG 538

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + L  +E  I    G  FNL+SPKQ+ +ILF KL      K K      T   + +
Sbjct: 539 KELGQELELIENEIIKSIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDS---TDIKVLE 595

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G +  I+NI++ RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ PN
Sbjct: 596 SLIGQHESIENIIKHRQIAKLKSTYTDNLIELINHKTNRLHTSFIQTKTATGRITSINPN 655

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DIH 
Sbjct: 656 LQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHT 715

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF  +
Sbjct: 716 ETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSY 775

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAADI
Sbjct: 776 PKIKEFITNQINFVRNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAADI 835

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ V    +  K+ +K+LLQ+HDE++ E P +E     +I+   ME A      L 
Sbjct: 836 MKIAMVRVFNEFKSKKMESKILLQVHDEMLIESPIKEKNEVEKILKIMMETA----YTLN 891

Query: 960 VPLKVNIKVSNNWQEEN 976
           +PL+ NI+   +W E +
Sbjct: 892 LPLRANIETGKSWGEIH 908


>gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
 gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
          Length = 916

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/986 (28%), Positives = 458/986 (46%), Gaps = 87/986 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K     ++DG+S ++RAF+A P      DG P NAI GF NM  K++     +       
Sbjct: 4   KRRTFAVIDGNSLMHRAFHAVPPTMNAPDGRPTNAIFGFLNMFLKMIDAFNPDG----VV 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD      R E+ P YKA RP +   L  Q P+++    A  +P ++ +G+E DDI+ 
Sbjct: 60  VAFDKGKPRVRMEMLPQYKAQRPPMDPDLHAQFPMIKELLAALNVPILQSEGWEGDDILG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPE 177
           T   + E+ G  + +++ D+D+ QLV+    +  T K       +  E V   + GI P 
Sbjct: 120 TMARLGEEAGCDMLLVTGDRDMYQLVTEHVNVVSTRKGLSDVAIMTPESVDDLYHGITPA 179

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            +     L GD+ DNIPG+PGIG K A+ L+ +YG+L+ ++ +A  +K  K  EN+  + 
Sbjct: 180 LVPDFYGLKGDTSDNIPGVPGIGPKKASALIAQYGSLDEVIAHADEVKG-KMGENLRAHI 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LSRK+  +RTD P+ +  +       +   + + L  L  T + NR       +  
Sbjct: 239 DDALLSRKVATIRTDAPVELDFDETSFPAFSADEVSAALGTLGITAMQNRFLALIGGEGG 298

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +       +  A + +       + S+     +  + +                
Sbjct: 299 AAAASSVFEIPAMVRAAAGDADALGAVAAEVSRAIDAGEWVAAV---------------- 342

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQ-----KLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                +++D     +       W+           G      + D  +  H     +   
Sbjct: 343 -----VDDDKEEGALFGLTRTLWLATSKGLFALEEGDGGTTAVVDGFNFAHGVIAGVLAR 397

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
              +    S  ++ +  +LS   S +           L  +     +             
Sbjct: 398 LFVEGRVASPDMKALLHELSPIDSSE-----------LELMDPLATDSTR---------- 436

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
                          D ++ +Y+LDS RS  D A +A  +L         +  +      
Sbjct: 437 -------------IFDTVVAAYLLDSDRSEFDEAYLADTYLQMALPAACGAEGAG----- 478

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                    A   + + L L   LR  +  E   +V++ ++ P++ V+++ME  G+ +D 
Sbjct: 479 ---EDAPAPAARTAALTLALVAPLRECMARENAANVFDGIEMPLVPVLAKMERAGMLVDP 535

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQ 649
           D L  +S  ++  +  +E +I DL+G E FN+ SP QL  +LF  +  P+    KTK G 
Sbjct: 536 DRLHSLSEGLATQITEVERSIRDLAGDETFNIGSPMQLSHVLFDVMGLPTKGLKKTKRGY 595

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A+        D+ I++ IL+WR+ SKIKSTY D+L   + +   RVHT Y+   T 
Sbjct: 596 YSTNAKV-LSDLARDHEIVRLILDWREKSKIKSTYLDTL-GPLRRGDGRVHTTYNQTITA 653

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP +++LG+ ++ AF +      ++ DYSQIELR+LAH++    L +
Sbjct: 654 TGRLSSSDPNLQNIPTRSELGRTVKTAFSAGEGSVFLAVDYSQIELRLLAHLSGDEHLVR 713

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    D H   AA +FGV + +V+P +R  AK +NF I+YG   + L+  L I  +EA 
Sbjct: 714 AFNEGEDFHAETAARVFGVPVSEVTPDLRSRAKAVNFGIVYGQQAYGLSQSLHISMAEAR 773

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           D I RY+  +PG+  +++      +Q GY ET++GRR H  E+ +    +R   ER A+N
Sbjct: 774 DMIDRYYEAYPGVRTFLDNVVARAKQTGYAETMYGRRRHIPELKAKNPQLRGFGERTAMN 833

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            P+QG+AADI + AM  V + LE+   A  M+LQ+HDEL FE P +E+   + ++   ME
Sbjct: 834 HPMQGTAADIIKIAMARVSRRLEEEGFAAHMILQVHDELDFECPVDEVERLTAMVRDVME 893

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
                 ++LRVPL         W + 
Sbjct: 894 HV----VDLRVPLIAEASTGITWADA 915


>gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
 gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
          Length = 886

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/985 (31%), Positives = 500/985 (50%), Gaps = 115/985 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA           DGL  NAI  F NML  ++    K++  ++
Sbjct: 3   QKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR E+Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + + E  G+ V I++ D+DL QL S  T +  T       E     H+ +  G+ P
Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPAHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E +                 E+
Sbjct: 179 TEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSIEELY----------------EH 222

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  + S+              L+  ++ D +   L   L  ++    +           
Sbjct: 223 VDEMKKSK--------------LKENLINDKDKAFLAKKLATIDRDSPVEVTLADTKLQE 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            NIE +         K    E +++  T+                    TP+    E L+
Sbjct: 269 PNIEDLRNLYERLGFKKFLAELDVNGTTS-------------------NTPETEKYEYLE 309

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +  I                 + K+      +F +     +   +     ++     
Sbjct: 310 LTKENIIE----------------LDKISE-KEVTFYLAMLGDNYHLAPIEGFSL----- 347

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 K+      + +  +                L++  E++   K   +IK   + L
Sbjct: 348 --KVGNKIYVSKDPVLLQENS---------------LRQMLEDKTIKKNVFDIKRTYVGL 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDK 532
           HR  I   G + D++L SY++++  +S+D+  IA  +  Y+ K   E+    K       
Sbjct: 391 HRLDIKAEGLDYDMLLASYLVNNENNSNDLGEIAHLYDDYSVKTDLEVYGKGKKQ---AV 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             D+   EH      VI +L   L  KL   +   +YE ++ P+  V+++MEITGI+++ 
Sbjct: 448 PDDNDFFEHLAAKVAVIEKLKTPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q+  + +  L  LE  IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG + T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTG-YST 566

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LEQ+    +PI+  IL++RQ++KI++TY   L + I     R+HT Y    T TGR
Sbjct: 567 SVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKGLLDCIQPDG-RIHTRYLQTLTTTGR 624

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIP KT+ G++IR+AF+       + S DYSQ+ELR+LAH++    + + F
Sbjct: 625 LSSVDPNLQNIPTKTEEGKQIRKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEAF 684

Query: 772 ENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           ++  DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R +A  
Sbjct: 685 KSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKT 744

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+ YF ++P I  Y+++     R+NGY ETI  RR +  +I+S   ++R+  ER AIN+
Sbjct: 745 FIENYFEQYPQIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINS 804

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI++ K L++  L TKM+LQ+HDEL+F+VP++E+ T  +I+   M+ 
Sbjct: 805 PIQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQS 864

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPL  +    +NW + 
Sbjct: 865 A----VKLDVPLIADSNWGHNWYDA 885


>gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
 gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
          Length = 887

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/986 (32%), Positives = 507/986 (51%), Gaps = 116/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y DYK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  VLVAFDVGKVTFRTKMYGDYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKDYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T+    E+ GF  TI++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTFATKGEENGFITTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+ GIG KTA+ L+Q+Y  +EN+                  +
Sbjct: 179 TEFIDMKALMGDSSDNYPGVEGIGPKTASNLIQKYHTVENLYD----------------H 222

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  + S++                         RLI      +   ++ +   T D  +
Sbjct: 223 IDDLKASKR-----------------------KERLI----RDKHNAILGKKLATIDRHS 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV +DI+  + + I  E        +   +F  L++  +    +   +   +E   
Sbjct: 256 ----PVTIDIDDVKRQPIDYEKLRQFYEKMNFRKF--LAELNASGQGQDATEVEKVE--- 306

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         +++ +++++   K        F +     +   +  +  A+     
Sbjct: 307 ------------YTVLDDQNVKKI--KANADDQIEFYLAMLGANYHLAPFVGFALKI--- 349

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     I++   V   Q++             L+   E+E   K   ++K   + L
Sbjct: 350 -------NYQIYVSRDVELLQETN------------LRHLLEDEQIKKNVFDLKRTMVGL 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SIPID 531
           HR GI + G + D++L SY++++  +S+D+  IA  +  Y+ K   EI    KS  +P D
Sbjct: 391 HRLGIHVHGQDYDMLLASYLINNENNSNDLGEIAHLYGDYSVKTDIEIYGKGKSEHVPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D ++  H     N I  L   L  KL   +   +++ ++ P   V+++MEI G++++
Sbjct: 451 ---DEELFNHLASKVNAIENLKQPLLEKLKEHEQDDLFDTIEIPTARVLARMEINGMKVE 507

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L ++  E +  L  LE+ IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 508 ASTLLELQNEFAVRLKELEDKIYQQAGERFNLNSPKQLGHILFEKLNLPVIKKTKTGY-- 565

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+  IL++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYLQTLTATG 624

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 625 RLSSVDPNLQNIPTRTEEGKQIRKAFVPTNPDGYIFSCDYSQVELRVLAHVSGDQNMQEA 684

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A  IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 685 FKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQ 744

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I EY++K     R+ GY ETI  RR +  +I++ K ++R+  ER AIN
Sbjct: 745 EFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTAIN 804

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 805 SPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQ 864

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 865 SA----VKLDVPLIADSGWGHNWYDA 886


>gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
 gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
          Length = 910

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/986 (30%), Positives = 485/986 (49%), Gaps = 88/986 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +++ L L+DG S + RAFY  P L+    G   NA+ GF N+L+K ++  + +    H
Sbjct: 1   MAEQSKLLLIDGHSILNRAFYGLPDLTNSK-GQHTNAVYGFLNILFKTMEEEKPD----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A TFR+ ++ DYK  R  +   L  Q+P+++    A GI  +  +G EADD+
Sbjct: 56  LTVAFDLSAPTFRHRMFADYKGTRKPMAAELREQVPMIKEMLAAMGICLVTKEGLEADDL 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGI 174
           + T + I E  G  VTI+S D+DL+QL +    +     +      E    + V + + +
Sbjct: 116 LGTMSKIGEAAGMDVTILSGDRDLLQLATDKVKIMIPKTKKGGTETESYYAKDVRETYQV 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ DNIPG+PGIG KTA  ++  YG++E    +A  +K  +   NI+
Sbjct: 176 SPTEFIDVKALWGDTADNIPGVPGIGEKTAINIIAAYGSIEAAHEHAEDLKPPRAARNIV 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           ++ + ARLS+ L  +     I   L    + +          K   F  ++ R       
Sbjct: 236 DFWDQARLSKTLATIDVHAKIDYDLAAAQIGNIFTDDAYRLCKDWGFKNILLRF------ 289

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D  +++    D+                     TS+FS L+ +T+           F E 
Sbjct: 290 DKESVDREEKDL---------------------TSRFSHLTSRTA-----------FEEM 317

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           +++  Q                 + W+         +   + D   A   +  A+AIS  
Sbjct: 318 IERAGQSQ---------------ETWI--------GAGLFLKDHSAARAGQIRALAISFE 354

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
            +        E   + L    + D +G    + ++   L+    +        ++K    
Sbjct: 355 GKAFFAEADTEARQLSLFGSEADDGSGDLIQSTDLRRGLQA-LADAGKNLAFLDLKE--- 410

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIP 529
            L +   S RG   D+ + +Y+LD   SS+    IA+  L+       +   K +   I 
Sbjct: 411 ALSQLSFSDRGRSFDLQVAAYLLDPLSSSYPTEDIARDQLALSIPSYSEFFGKKKADQIW 470

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            D         +A   + V  +    L  +L  + +  +YE ++ P++  +  ME  GI 
Sbjct: 471 EDPEEVEHRMHYACYQAYVASRAPQKLLKRLEEQGMRALYEEVELPLVYTLYDMETAGIA 530

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ++++ LK    ++   +  LEE IY  +GE FN++SPKQLG++LF +L  P   KTKTG 
Sbjct: 531 VEKEALKSYGDQLVGRINELEEGIYREAGETFNINSPKQLGEVLFGQLGLPGARKTKTGY 590

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +TA D+      +  I++++LE+RQL+K+KSTYAD L   I     R+H+ +    T 
Sbjct: 591 --STAADVLDPLAVNYQIVRDVLEFRQLTKLKSTYADGLAKVI-ADDGRIHSSFQQTVTA 647

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S EPNLQNIPI+ +LG++IRR F +      + +DYSQIELR+LAH+++   L +
Sbjct: 648 TGRLSSTEPNLQNIPIRMELGKEIRRVFPAMEGCVFVDSDYSQIELRVLAHLSQDPKLIE 707

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            +    DIHR  A+ +F    E+V+ Q R +AK +NF I+YGIS F LA  L I R EA 
Sbjct: 708 AYRQGKDIHRATASLVFHTPFEEVTDQQRSNAKAVNFGIVYGISAFGLAKDLGISREEAQ 767

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           +YI  YF  +P +H+Y++    F R+ GY  T+FGRR    E+ +     R   ER A+N
Sbjct: 768 EYIDGYFAAYPRLHDYLDGLVEFARKEGYAVTLFGRRRPVPELKNSNFMQRQFGERVAMN 827

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI + AM+ VH  L    L ++++L +HDEL+ E  E+E     +I+   M 
Sbjct: 828 APVQGTAADIIKIAMVRVHDRLAKEGLRSRLILTVHDELLVETFEQEEQEVREILDQEMR 887

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A      L V L+++     NW + 
Sbjct: 888 GAA----QLSVELEIDTHSGRNWYDA 909


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/977 (30%), Positives = 494/977 (50%), Gaps = 89/977 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++D   F +R++YA P L R  +G P   + GF N    L+ +  ++    +    
Sbjct: 2   KTITIIDTFGFFFRSYYALPPL-RNSEGFPTGLLTGFIN----LVDSLHRDHGTDYLVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFRNEIYP+YKANR   PE L  QLP+     +  G   +  +GFEADDII T 
Sbjct: 57  LDSKGPTFRNEIYPEYKANREAPPEDLTKQLPVAIRWVEKMGFANLAKEGFEADDIITTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           T  A ++   V ++S DKDL QL+      +YD++K ++ID    I+K+G+ P+  V  Q
Sbjct: 117 TKFAREQDMKVKVVSHDKDLYQLIDDGLVVMYDSIKRKEIDEAACIEKFGVNPKDFVDFQ 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           A+ GD+ DN+PG+ GIG K AA L+ E+  LENI  N  +    + ++ +LEY E+A LS
Sbjct: 177 AIVGDASDNVPGVKGIGVKGAAKLINEFHTLENIYANIEKCGTPRIQKLLLEYKESAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+LV +R DV   + L   + E+ N   L   +   E  ++   +       +       
Sbjct: 237 RELVKMRDDVYDDLDLSKFVFEERNY--LSCLIDEFEKYEMKRALQKAKVGQS------- 287

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            ++   +     ++T +    +I                                     
Sbjct: 288 -EVGCHDIAPPKLKTPLLTFESI------------------------------------- 309

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                  +   + + + + +L      +F   T  +D    K +  +  T ++K   ++ 
Sbjct: 310 ------TLDTKEKLNEVIDELSKDTLVAFDTETTGLDTRTDKMVGFSFCTSNEK---AYY 360

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
           V      L V        +    ++ ++ LKK         +G N+K+D  +L+  YG+ 
Sbjct: 361 VPVGHSYLGVE-------EQVDPEDAVAALKKLM---KQKIVGQNLKFDLSLLYNQYGME 410

Query: 483 -MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +  F D M+M+++ D G S   + S+AQK+  Y  K   +  K       ++ +    +
Sbjct: 411 EVLPFADTMIMAWLTDPG-SRVGLDSLAQKFFKYDMKPFKEMVKKGENFSHVNIADATFY 469

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYE---RLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           A E++ +   L+  ++ K+ +  L H+ +    ++ P I+V+ +ME  GI++DQ  L+ +
Sbjct: 470 AAEDAWMTFLLYGAIKKKMELSSLTHLLKEAKDVEYPFINVLIRMERLGIKVDQVKLETL 529

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
              +S++L  L   I++LSG +FN+ S +QLG +LF  L    G KTKTG   +T + + 
Sbjct: 530 KKTLSEDLHRLTSEIHELSGSEFNIRSTQQLGVVLFQHLGLKGGKKTKTGY--STNEAVL 587

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLE 717
           Q    ++P+I  ILE+R+  K+ STY + L     K  + R++T +    T TGRL+S +
Sbjct: 588 QSLKHEHPVIGKILEYREYHKMLSTYVEPLLKLAKKDEKSRIYTSFIQTGTATGRLSSKD 647

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP+++ LG+ +R AF++    KL+S DYSQIELR+LAH +K   L + F    DI
Sbjct: 648 PNLQNIPVRSTLGRSVREAFVAKEGYKLVSIDYSQIELRLLAHFSKDAALMEAFNKGTDI 707

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FG   E+ +   R  AK++NF ++YG+ P +L+ +L I  +EA + I  YF 
Sbjct: 708 HMATAVKLFG---EEEAKAKRNFAKSVNFGLLYGMGPKKLSDELGITSAEAKEIIANYFA 764

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FP +  ++E  +  V+ +GYVET+  RR  +D  N+     +    R ++N   QGSAA
Sbjct: 765 SFPTVKNFLEGIQERVKIDGYVETLLKRRRIFDYENA-NGMQKAAYMRESVNTVFQGSAA 823

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + +M  +   + D  L   MLLQIHDEL+FE+ E+++   S+  VH ME        
Sbjct: 824 DLIKLSMNDIDSMIIDEALEAHMLLQIHDELIFEIREDQVEKISKRFVHVMEH----IWE 879

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL  ++ V ++W E
Sbjct: 880 LEVPLVCSVSVGDSWGE 896


>gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133]
          Length = 876

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/978 (30%), Positives = 478/978 (48%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA            +L     +      E + E+ + 
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIK----------LLNQFDTV------EGVYEHLD- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + +G +L   L+  +   L+++   T + D + I
Sbjct: 220 --------------------------EISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A      D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNVDFTSL----------------KEAVIHFELDGGNYLRNNILKFSLFTGEK--- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                         H   ++   N   +     L  + EN +  K+ ++ K   +  HR 
Sbjct: 344 --------------HIVINADDINNYAE-----LVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
 gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/971 (31%), Positives = 485/971 (49%), Gaps = 98/971 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + L+D SS++YRAF+A   L+    G P NAI G  NML K+L+  +     S+ A++
Sbjct: 17  KTILLIDISSYLYRAFHAIRSLATSQ-GFPTNAIYGVTNMLLKVLRERQ----PSYLALV 71

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  YP YKA+RP +PE L+ QL  +R    A  +PA+E++G+EADD+IA  
Sbjct: 72  FDAKGPTFRHRRYPAYKAHRPGMPEDLVKQLGYIRQIITALNLPALEMEGYEADDLIAAL 131

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V IIS DKDL+ L      ++D +K+     + + +K+G+PP  +V L+A
Sbjct: 132 ARQARAAGLRVEIISGDKDLLPLAQEGVTIWDPMKDVYFTPQVIQEKFGLPPAALVDLRA 191

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           LTGD  DNIPG PGIG KTA  L+  + +L+N+  +   +K+    + +           
Sbjct: 192 LTGDPSDNIPGAPGIGPKTALKLIGHFHSLDNLFAHLDEVKE----KKLQN--------- 238

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                                     RL  + + +  ++ + R+         +  PV  
Sbjct: 239 --------------------------RLRDYQEQVRLSRDLLRL--------EDQAPVAF 264

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D +  +                   +FS L+ + S  N                     +
Sbjct: 265 DPDRLQ---PGPPDRAALRRLFAELEFSKLAKEISLDN---------------------H 300

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            + +  +   + + + V  +  +G  +    + +     ++   + +S  + +       
Sbjct: 301 TEDFVLLDTREALLEAVASIRAVGRLALFCHSTSQHPMLAQLKGLGLSWEENQGA----- 355

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              ++      ++         K+I   L+  + +    KI  ++K   +   RYG  + 
Sbjct: 356 ---YLPFQHRLTE---------KDIWEILEPLWSDPGIAKISPDLKTAMIWGERYGHPLV 403

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           G   DI+L SY+L+  R    I ++A   L        +     +    +       +A 
Sbjct: 404 GSVSDILLASYLLNPVRFDQTIENVALLDLGLNLLSPRELAGRPLAASDLPLELAIGYAA 463

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
                  +LW  L  +L  EKLL +YE L+ P++ V++ ME  GI++D D L++   E+ 
Sbjct: 464 GRGQAAFRLWPRLHQQLQQEKLLRLYEDLELPVLRVLAAMETRGIRVDLDFLQRFGREVE 523

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           K L SLEE I++++GE F + SP QL  ILF +L+ P+  KTK     +T  ++      
Sbjct: 524 KELASLEEEIHEMAGEPFLIQSPPQLAAILFDRLQLPTQKKTKGRTAYSTDNEVLTALAD 583

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +PI   ++ +R L K+K+TY D L   ++  + R+HT +  +   TGRL+S +PNLQNI
Sbjct: 584 YHPIAAKVIAYRTLGKLKATYVDGLCKQVHPASGRIHTTFVQSVAATGRLSSRDPNLQNI 643

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++ +LG ++R+AF+       IS DYSQIELR+LAH +    L Q F+   D+HR  AA
Sbjct: 644 PVRGELGAQLRQAFLPSSGYIFISGDYSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAA 703

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           E+FG++ E VS +MRR AK INF IIYG+S F LA QL + +  A D+I RYF R  G+ 
Sbjct: 704 EVFGLHPELVSREMRRQAKVINFGIIYGMSAFGLAKQLNVSQRLAQDFINRYFARHTGVK 763

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y ++  +  RQ G+V T+ GRR     ++S   ++R   ER+A+N P+QGSAAD+ ++A
Sbjct: 764 RYFDQALDTARQKGWVTTLLGRRRPIPHLHSSNRNLRQEAERSALNTPLQGSAADLIKKA 823

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M++V  +L    L+ ++LLQIHDEL+ E P +E       +  +ME        LR PL 
Sbjct: 824 MLAVEAALVHEGLSGRLLLQIHDELLLEAPYQEQAATVDCLRRAMEGVA----QLRTPLV 879

Query: 964 VNIKVSNNWQE 974
           V+I+   NW E
Sbjct: 880 VDIQTGENWGE 890


>gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 886

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/985 (32%), Positives = 510/985 (51%), Gaps = 115/985 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA           DGL  NAI  F NML  ++    K++  ++
Sbjct: 3   QKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR E+Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + + E  G+ V I++ D+DL QL S  T +  T       E    +H+ +  G+ P
Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPDHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GDS DN PG+  +G KTA+ L+Q+YG++E +                 E+
Sbjct: 179 TEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSIEELY----------------EH 222

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  + S+              L+  ++ D +                + +   T D D+
Sbjct: 223 VDEMKKSK--------------LKENLINDKD-------------KAFLAKKLATIDRDS 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV + +  T+ +   IE   +    +   +F +    T   +SEQ  +K       
Sbjct: 256 ----PVEVTLADTKLQEPNIEDLRNLYERLGFKKFLAELGSTGTTSSEQEIEK------- 304

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +  TK+    + K+      +F +     +   +     ++   ++
Sbjct: 305 -----------YEYLELTKENIVELDKISE-KEVTFYLAMLGDNYHLAPIEGFSLKVGNK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              +   V                    L +E L  L+K  E++   K   +IK   + L
Sbjct: 353 IYVSKDPV--------------------LLQENL--LRKMLEDKTIKKNVFDIKRTYVGL 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDK 532
           HR  +   G + D++L SY++++  +S+D+  +A  +  Y+ K   E+    K       
Sbjct: 391 HRLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDDYSVKTDLEVYGKGKKQ---AV 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             D++  EH      VI +L   L  KL   +   +YE ++ P   V+++MEITGI+++ 
Sbjct: 448 PDDNEFFEHLAAKVAVIEKLKTPLLEKLKDHEQDDLYETIEIPAAFVLAKMEITGIKVEA 507

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q+  + +  L  LE  IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG + T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTG-YST 566

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LEQ+    +PI+  IL++RQ++KI++TY   L   I     R+HT Y    T TGR
Sbjct: 567 SVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKGLLECIQPDG-RIHTRYLQTLTATGR 624

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIP +T+ G++IR+AF+       + S DYSQ+ELR+LAH++    + + F
Sbjct: 625 LSSVDPNLQNIPTRTNEGKQIRKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEAF 684

Query: 772 ENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           ++  DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R +A  
Sbjct: 685 KSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKT 744

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+ YF ++P I  Y++      R+NGY ETI  RR +  +I+S   ++R+  ER AIN+
Sbjct: 745 FIENYFEQYPQIKNYMDDAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINS 804

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI++ K L++  L TKM+LQ+HDEL+F+VP++E+ T  +I+   M+ 
Sbjct: 805 PIQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQS 864

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPL  +    +NW + 
Sbjct: 865 A----VKLDVPLIADSNWGHNWYDA 885


>gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00]
          Length = 876

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/978 (30%), Positives = 477/978 (48%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA            +L     +      E + E+ + 
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIK----------LLNQFDTV------EGVYEHLD- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + +G +L   L+  +   L+++   T + D + I
Sbjct: 220 --------------------------EISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNVDFTSL----------------KEATIHFELDGGNYLRNNILKFSLFTGEKHIV 346

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +      +                      + L  + EN +  K+ ++ K   +  HR 
Sbjct: 347 INADDIINY----------------------AELVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  G+VET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
 gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
 gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
          Length = 871

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/977 (35%), Positives = 509/977 (52%), Gaps = 107/977 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+N L L+DG  F++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTKKNTLLLIDGYGFVFRAYYAQQPLT-SPKGEPVGALYGFTSMLLKLLNDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+EIYP+YKANRP  PE L+ QLPLVR   +    P +E  GFEADDI
Sbjct: 56  AAVVFDSGGKNFRHEIYPEYKANRPPPPEDLIAQLPLVRDVARNLNFPILEKNGFEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V +IS+DKDL+QL++    +YD +K + I  ++V++K+G+  +K+ 
Sbjct: 116 IATFAAKTASIGEEVVVISSDKDLLQLMNDNVKIYDPLKAKYITEDNVVEKFGVTSDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  DNIPG+P IG KTA+ L+ ++G +ENI  +  ++   K+RE +    E A
Sbjct: 176 EVMALIGDKSDNIPGVPSIGPKTASSLITQFGTVENIFNSLEQVSSIKQRETLQNSKEAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S +L+ L  +V +   L+ L     +  +L  FL    F  L  R             
Sbjct: 236 LISWQLIGLDYNVDMDFKLDALEWSPPDHNKLTEFLHEYGFKSLYKRAENL--------- 286

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
               DI  +E+K +  E  ++                                       
Sbjct: 287 ---FDIKISEHKEVIEEKAVEIKD------------------------------------ 307

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     I N  +++ + +K + +G     I         +K   IA     +    
Sbjct: 308 ----------ISNKAELEAFAEKAKKVGIFGIYI-------LQNKGANIAFILSLKNQAY 350

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
             K+     +L  + S+         +     +     ++   KI +++K          
Sbjct: 351 IIKISNEANNLFTYNSK------ADNEWFTDIIFNLLTDQSIKKITYSLKPLLKFYASRA 404

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
             +   ED+ LM+Y L +G    ++                         + +      E
Sbjct: 405 QQITAIEDLELMNYALSAGLPQKNL------------------------FEAVEKEATIE 440

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            A +     + L+     +L   K   +Y+ +D P+  V+ +ME  GI++D + L Q+S+
Sbjct: 441 EAAKIVVGFIDLYQQTILELKDNKAFRIYKEIDLPVCFVIDKMEKAGIKVDANYLNQLSS 500

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQ 659
           E    +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G  + K   + T A  LE+
Sbjct: 501 EFGAEILKLEEEIFVLSGMKFNIGSPKQLGEILFEKMQLPFGKTSAKANSYSTGADILEK 560

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           ++    PI   +L WRQL+K+K+TY DSLP  I+  T+R+HT +   ST TGRL+S EPN
Sbjct: 561 LSEQGYPIADLLLRWRQLTKLKNTYTDSLPKQIDNITRRIHTTFLQTSTTTGRLSSQEPN 620

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQN+PI++  G KIR+AF++    KLISADYSQIELRIL+HIA I  L Q F N  DIH 
Sbjct: 621 LQNVPIRSGEGNKIRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQAFINKDDIHT 680

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A +IF +  E+++ + RR AK INF IIYGIS F LA QL +  +EAA+YIK+YF  +
Sbjct: 681 QTACQIFNLQKEELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNTEAAEYIKKYFAEY 740

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ EY+E TK+F + NGYV   FGR+     IN     ++   ERAAINAPIQG+ ADI
Sbjct: 741 KGVQEYMEATKSFAQANGYVTDFFGRKCFVPLIN--DKRLKQFAERAAINAPIQGTNADI 798

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM  + + +E  KL T+++LQIHDEL+FE P +EI T   II   ME +     N+ 
Sbjct: 799 IKIAMTLLDREIEKRKLKTRLVLQIHDELLFEAPIDEIETIMPIIKQIMENST----NMD 854

Query: 960 VPLKVNIKVSNNWQEEN 976
           VP+   I+  NNW E +
Sbjct: 855 VPIITEIRAGNNWMEIH 871


>gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
 gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
          Length = 863

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/973 (34%), Positives = 510/973 (52%), Gaps = 112/973 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             ++L+D S+  +RAFYA   LS    G+PVNA+ GF +M+ KLL+  + E    +    
Sbjct: 2   KKIYLIDVSAMFFRAFYAIRALS-SPSGVPVNAVYGFLSMMIKLLKEEKPE----YLVFC 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    +FR  +Y  YKA+R ++P+ L  Q+P ++      G+PA E++ FEADDII T 
Sbjct: 57  YDRKEPSFRKTMYDGYKAHRTEMPDELAQQIPYIKRLADLLGVPAFEVESFEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  + + G  V I+S DKD  QL+     LYDT+K  + + E V +KWG+ P++ +   A
Sbjct: 117 TKWSRRNGMEVFIVSGDKDFGQLIEDGVTLYDTMKGVRYNAEGVFEKWGVRPDQFIDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + GD+ DN+PG+ G+G K A  LL+++ ++E+I  N  +++ K  RE ++   + A LS+
Sbjct: 177 IVGDASDNVPGVKGVGEKGAIKLLEQFKHVEDIYENIDKVESKSVREKLIASKDNALLSK 236

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           KLV +  DVP+   LE   L+           KA E    ++ +                
Sbjct: 237 KLVTISCDVPMPDDLEAYKLKP---------FKADELRAFLHEL---------------- 271

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                               + + S F ++    +          L             +
Sbjct: 272 -----------------NFKSFEKSLFGTVDTTPAAAAPAAPAGPLIKTAAPSAPLSIAD 314

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           + + T ++  ++ Q   + + T   A F     ++            S +          
Sbjct: 315 DVAPTIVIAKEERQFTEKSMTTRELADFLAEHQSL---------WGFSDMRG-------- 357

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISM 483
                   V    +S        E L  L   F+       G+++K       + G  + 
Sbjct: 358 --------VFIGTESQIIQVPDHEYLGKLTDTFQ---VQWHGYDLKSFWH---KIGAKTP 403

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
               D  L +YVL +G +S D A I  ++++    ++             S SQ+     
Sbjct: 404 VAAWDSQLAAYVLKAGDTS-DFAKIYTRFMADVLPDLA------------SPSQLY---- 446

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
              N  L     L+ +L   +   VY+ LD P+  V+  ME  G++ID+DLL + S E++
Sbjct: 447 ---NAQLNFATTLKSQLQTVQGEKVYQELDLPLARVLLSMERLGVRIDKDLLAKQSEELA 503

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           K++  +E+ I++ +GE FN+ SPKQLG ILF KL  P+G KTKTG     + D E +   
Sbjct: 504 KDIAEIEKQIHEAAGESFNVGSPKQLGVILFEKLGLPAGKKTKTGY----STDEEVLLGL 559

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           ++PI K +L+WR++SK+KSTY D+LP  I+ + +RVHT ++ A T TGRL+S +PNLQNI
Sbjct: 560 EHPIAKLVLQWREMSKLKSTYVDALPTMIDPKDERVHTSFNQALTTTGRLSSTQPNLQNI 619

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI+T  GQ++R+AFI+ P  KL+S DYSQIELRILAHI++   L + F   LDIH   AA
Sbjct: 620 PIRTARGQQVRKAFIAAPRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAA 679

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           E+FGV ++ V+ + RR AK +NF I YG   F LA  L I R+EA D I+RYF+RF  + 
Sbjct: 680 EVFGVPLKDVTAEHRRSAKAVNFGIAYGQGAFGLAENLGISRTEAKDIIERYFNRFKNVR 739

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           EYI+ T     + GYVET+FGRR + DE+ S   +++   ERAAINAPIQG+A+D+ ++A
Sbjct: 740 EYIDGTIKMAHEKGYVETLFGRRRYIDELQSKNMALKKFGERAAINAPIQGTASDLVKKA 799

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           MI V       K+  +MLLQ+HDEL+FE  EE +   S  +V  ME        L+VPLK
Sbjct: 800 MIEVF-----EKVPVRMLLQVHDELIFEDFEENLQKHSPQLVSIMENVM----KLKVPLK 850

Query: 964 VNIKVSNNWQEEN 976
           VN  + NNW E +
Sbjct: 851 VNYAIGNNWDEAH 863


>gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS]
 gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS]
          Length = 929

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/989 (29%), Positives = 471/989 (47%), Gaps = 111/989 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +  L L+DG+S  YRAFYA P  + +   GL  NA+ GF  ML  LL++ +     SH 
Sbjct: 30  DKPTLMLLDGNSLAYRAFYALPAENFKTQGGLTTNAVYGFTAMLINLLRDEQ----PSHV 85

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A  FD    TFR + YP+YKA R   P+    Q+ + +    A GI  +   GFEADDII
Sbjct: 86  AAAFDVSRQTFRVDKYPEYKAGRSSTPDEFRGQIDIAKEVLVALGIAVLAEPGFEADDII 145

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE EG+ V +++ D+D +QLVS    +    K      +   + V +K+G+ P+
Sbjct: 146 ATLATQAEGEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSDLTRFTPDAVQEKYGLTPQ 205

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPG+G KTA   + EYG+L+ ++ N  ++K  K  + +    
Sbjct: 206 QYPDFAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQALVDNVDQVKG-KVGDALRANL 264

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
               L+R+L  L  DVP+            +  R+  +         I+R+    +    
Sbjct: 265 SHVVLNRELTDLVKDVPLP--------HTPDTLRVQPW-----DRDQIHRLFDDLEF--- 308

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               V+ D        +  E E   D   K  +   L+                      
Sbjct: 309 ---RVLRDRLFETLAAVEPEVEHGFDVRGKALERGELA---------------------- 343

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                                 W+ +          ++   + A+ +   A+AI   D  
Sbjct: 344 ---------------------AWLSEHSLGNRFGLAVVGTHL-AYDADATALAIVAADGD 381

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     +L  +  + L  +  +    K  H  K     L 
Sbjct: 382 GRY-------------------IDTTSLDPDDEAALASWLADPGPPKALHEAKLAMHDLA 422

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G  + G   D  L +Y++  G+ S  +  ++ ++L    +    +++    +D     
Sbjct: 423 GRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRADNPAQQQLSLLDDSDGG 482

Query: 537 --QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             Q  +  I  +  +L L   L  +L       +  R++ P+  V+++ME TGI +D D 
Sbjct: 483 DDQAVQTLILRAVAVLDLADALDEELARIDSSSLLGRMELPVQRVLAEMEHTGIAVDIDQ 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+Q+ +E +  +    E  Y + G++ NL SPKQL  +LF +L  P   +TKTG      
Sbjct: 543 LRQLQSEFADLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELAMPKTKRTKTGYTTDAD 602

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                 +   +P ++++L  R  +++K T  D L N +     R+HT ++     TGRL+
Sbjct: 603 ALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDG-RIHTTFNQTIAATGRLS 660

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS---PPTK-------KLISADYSQIELRILAHIAKI 764
           S EPNLQNIPI+T+ G++IR AF+    PP         +L++ADYSQIE+RI+AH+++ 
Sbjct: 661 STEPNLQNIPIRTEAGRRIRDAFVVESRPPGSGGGAVFTELMTADYSQIEMRIMAHLSQD 720

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    D+H  VA+  F V I++V+P +RR  K +++ + YG+S + LA QL+I 
Sbjct: 721 AGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAYGLSAYGLAAQLKIS 780

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA   + +YF RF GI +Y+    +  R++GY  T+FGRR +  E++S   ++R   E
Sbjct: 781 TEEAKVQMDQYFARFGGIRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRNVREAAE 840

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAA+NAPIQGSAADI + AMI V ++++D  L+++MLLQ+HDEL+FEV + E  T  +++
Sbjct: 841 RAALNAPIQGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLV 900

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              M  A      L VPL+V++    +W 
Sbjct: 901 RDKMGSAYA----LDVPLEVSVGYGRSWD 925


>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 743

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/797 (35%), Positives = 436/797 (54%), Gaps = 65/797 (8%)

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAETARLSR 244
           DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L     A LS 
Sbjct: 1   DNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKSNADLSY 60

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L  ++TDV + +  + L+L +    +LI +    EF + +N V    D      E    
Sbjct: 61  TLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSITQTTEQ--- 117

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                +K +Q+ + S   S +  E TP+              I+
Sbjct: 118 --------------------PVKMNQYKATSQDQSAV--ENTPK------------IQID 143

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  ++   D+ +W++KL +    +    TD++D   +  + I+ + L+  +     +
Sbjct: 144 RTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGEAAYLPL 202

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           +  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R+GI ++
Sbjct: 203 QLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFARHGIELQ 253

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
           G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I   Q  E
Sbjct: 254 GVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIPLEQATE 312

Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D L   S
Sbjct: 313 YAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQS 372

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G   T  + LE+
Sbjct: 373 NEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEE 432

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           ++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL+S +PN
Sbjct: 433 LSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPN 491

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F    DIHR
Sbjct: 492 LQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHR 551

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+  YF R+
Sbjct: 552 STAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMDLYFQRY 611

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+QG+AADI
Sbjct: 612 PSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADI 671

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A      L 
Sbjct: 672 IKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA----ELV 726

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V + V  NW E +
Sbjct: 727 VPLIVEVGVGKNWDEAH 743


>gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
 gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
          Length = 887

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/989 (32%), Positives = 498/989 (50%), Gaps = 117/989 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K + L L+DG+S  +R+F+A      K    +GL  NAI GF  ML  +L+  +    
Sbjct: 1   MAK-DKLLLIDGNSIAFRSFFALHNSLSKFVNKNGLHTNAIFGFNKMLDSILEQYQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +   V FD    TFRN  + +YK  R K P  L  Q+P +R     +GI + E+  +EA
Sbjct: 56  PTAALVAFDAGKTTFRNGKFDNYKGGRSKTPPELSEQMPYLRELLTGYGIKSYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    AE + +AV +++ D+DL QL S  T +  T K     E+    +V +K G
Sbjct: 116 DDIIGTLAKEAEAQDYAVVVVTGDRDLTQLSSEKTIVAVTKKGVSEVEEYTPAYVEEKLG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P++++ ++ L GD+ DN PG+  +G KTA  LL+++ +LE                N+
Sbjct: 176 VTPKQIIDIKGLAGDTSDNYPGVTKVGEKTAIKLLKQFDSLE----------------NL 219

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E+ +  +                             ++   L        I++   T  
Sbjct: 220 YEHLDELK---------------------------PSKMKEHLIEDRDNAFISKDLATIR 252

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    P+ + ++  +  GI  E   +    +    F S  DQT+  +  +  +K    
Sbjct: 253 RDA----PIEISLDDVQYAGINEEYLREFYHQMNFKSFLSKLDQTATQDGVEAVKK---- 304

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                            + N  +     Q     G   F +     +   S      I  
Sbjct: 305 ---------------EVVFNVLNKDNVEQLQSLKGEIDFYLEMLDKNYHLSDFTGFVIGN 349

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            D               + V    +            S +K   E+        + K   
Sbjct: 350 ADN--------------IWVSDDVELLNN--------SKIKAILEDPKIKINVFDSKRTY 387

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSI 528
           + LHR GI +     DI+L SY+LD+  +S+D+  +A +              K  K ++
Sbjct: 388 VGLHRLGIKLTAVNFDILLQSYLLDTNDNSNDLGQLAHEHDYDAIDTDDDVYGKGAKRAV 447

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P      +++  H       I  L   L  +L+  +  ++Y  ++ P+  V+++MEI+GI
Sbjct: 448 P----EQTELFNHLARKLAAINFLGKQLDQELVKNEQNNLYWDIELPLAIVLAKMEISGI 503

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D++ L Q+ +E ++ L  +E NIY+ +GE+FNL+SPKQLG +LF KLK P   KTKTG
Sbjct: 504 KVDRNRLNQMQSEFTERLSEIETNIYNEAGEEFNLNSPKQLGVVLFEKLKLPIIKKTKTG 563

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +   G++PII NIL +R LSKIKSTY D L   I+   ++VHT Y    T
Sbjct: 564 Y--STAVDVLEKLQGESPIIDNILNYRTLSKIKSTYVDGLLKVIHTTDEKVHTTYVQTLT 621

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++ + G+KIR+AF+ +     ++S+DYSQIELR+LAHI     L
Sbjct: 622 QTGRLSSIDPNLQNIPVRIEEGRKIRQAFVPAREGWHILSSDYSQIELRVLAHITGDQNL 681

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+N  DIH   A +IFG+ +  +V+P +RR AK +NF I+YGIS + L+  + I R 
Sbjct: 682 QEAFKNGEDIHATTAVKIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRK 741

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I+ YF  FPG+ +YI+++    ++ GYVETI  RR +  +INS   ++R+  ER 
Sbjct: 742 DAKKFIETYFKEFPGVKKYIDESVQLAKEQGYVETIAHRRRYLPDINSSSFNLRSFAERT 801

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI +   LE   L ++MLLQ+HDEL+FEVP+EE+T   +++  
Sbjct: 802 AMNTPIQGSAADIIKIAMIDMENELEKRNLKSRMLLQVHDELIFEVPDEEMTLMKELVPK 861

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    + L VPLKV     N W + 
Sbjct: 862 VMDSA----VKLDVPLKVGAAWGNTWYDA 886


>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 897

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/980 (31%), Positives = 480/980 (48%), Gaps = 92/980 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DGS FI+RA++A P LS    G+P NA+ GF NML K L+    E   +H A++
Sbjct: 2   PTLTLIDGSGFIFRAYHAIPHLSTTK-GIPTNAVYGFTNMLLKALR----EHAPTHVALV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    +FR++I P+YKANRP+ P+ L  Q PLVR   +A  +P IE  GFEADDIIAT 
Sbjct: 57  FDAGRRSFRHDIDPEYKANRPEAPDDLASQFPLVRDVARALNVPVIEEPGFEADDIIATL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-----KEEKIDIEHVIKKWGIPPEKM 179
              A   G+ V +++ DKD  QLV     LYD +     +        V KK G+ PE++
Sbjct: 117 AGRARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V  Q++ GD IDN+PGI G+G  TAA L++ +G  E +L     I               
Sbjct: 177 VEYQSILGDKIDNVPGIAGVGEVTAAALIRHFGTTEAMLARPGEIP-------------- 222

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +SR                     +    ++++  + +   + +  VA   D D    
Sbjct: 223 AAVSR-------------------GGEKLRDKVVANAERIRTNRRL--VALRRDLDLPFA 261

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                     + +  A+ +E++    +K                 +TP+ +        +
Sbjct: 262 PEAFGRRPPDQERARALFSELEFSRLVKEL------PPPPPTARAETPETIDGRAALDAA 315

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              +                     +  G      +        +  + +A +       
Sbjct: 316 VAALV--------------------QAGGPVGLLPVLGEGPPRTAPLVGLAFA------- 348

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ L                ++   L+   E        H +K     L R 
Sbjct: 349 --GAGRAFYLPLGHRYL--GAPAPLAPADVREGLRPLVE-AALPLHAHELKAAAHALARL 403

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKSRKSSIPIDKISDS 536
           G++  G  ED  LMS +L   R  H +  +A++  S    R     +++ +  ++ +   
Sbjct: 404 GLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRNPADGAKRGAPGLEGLEVE 463

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +V   A   +  +  L   L   L  E+L  +Y  +++P++ V+ +ME TGI +D+  ++
Sbjct: 464 RVAAWAGACAASLPDLAAKLAEGLEAERLSPLYREVERPLVPVLVEMERTGILVDRGAME 523

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +SAE  +++  LE  I+  +G  FN++S ++L  +LF +L+ P   + KTG   +T QD
Sbjct: 524 GMSAEFGRSMQDLEARIHAAAGHPFNVASTRELAQVLFVELELPVVKRLKTG--PSTDQD 581

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +     + + + +LE R LSK+K TY D+LP  ++    R+HT +  A   TGRL+S 
Sbjct: 582 VLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSSS 641

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+L ++IR+AF++P   +L+SADYSQIELRILAH +    L Q F +  D
Sbjct: 642 DPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRED 701

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H   AAE FGV  E+V+P  RR AK +NF I YG+S F L+ +L +P SEA   I RYF
Sbjct: 702 VHTRTAAETFGVPPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYF 761

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+ G+  YIE      R  G   T+FGR     EI +   ++RN  ER AIN PIQG+A
Sbjct: 762 TRYAGVRRYIEWAVEEARAKGESRTLFGRARTMPEIGARNPALRNAAERTAINTPIQGTA 821

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI VH +L   + A ++LLQ+HDELV EVPE E+     ++   ME A     
Sbjct: 822 ADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELAPVEALVRREMEGAA---- 877

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L+VPL+V +     W E +
Sbjct: 878 RLKVPLEVQVGHGQTWAEGH 897


>gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
 gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
          Length = 944

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/978 (34%), Positives = 530/978 (54%), Gaps = 58/978 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D    ++RA+YA P L R   GLP+  + GF N+  K ++      +  +  V+FD  
Sbjct: 6   IIDAYGLLFRAYYALPNL-RTSYGLPIGGVYGFINIFLKYIEK----HVTDYLVVVFDTG 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +  FR+ IYP+YK NRPK+P+ L+PQ  L+R A  AF I + E+ G+EADD+IAT +   
Sbjct: 61  SKNFRHNIYPEYKGNRPKLPDDLIPQFSLLREAVNAFNIASEEVVGYEADDVIATLSKKY 120

Query: 129 EK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
            K +G  VT++++DKDL+QL+    C++D +K + I+ E V  K+GI   +++   +LTG
Sbjct: 121 CKLQGVKVTVVTSDKDLLQLLKYNICIFDPIKNKYIEEEDVQSKFGISSNQLLDFLSLTG 180

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DN+PGIPGIG KTAA LL ++G+L+N+L++   +K  K RE+I +Y++ A LSR+LV
Sbjct: 181 DASDNVPGIPGIGVKTAAKLLNDFGSLDNLLLHVHEVKTNKCRESITQYSDQAILSRQLV 240

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA----NIEPVV 303
            L  +V I   +E    +      L+ FLK  E   L+N+V   +    A    N     
Sbjct: 241 TLCDEVDICGDIEKYSFQISGIQELVEFLKKYELQSLMNKVDKFFKVGNASSAVNQNTSS 300

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS--KINSEQTPQKLFLERLQKLSQY 361
            D     +K I  E +   +   K  +  + S   +    +S++T     +   +  S  
Sbjct: 301 SDKTMGGDKVIHHEPQSSMNEVDKFFKVGNASSAVNQNASSSDKTMGGDKVIHHELQSSM 360

Query: 362 PINNDSYTK--IVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQK 417
              +  +      +T +           GS      T+++  F  + K   I    ++  
Sbjct: 361 NKVDKFFEVGNTSSTVNQNASSSDKTMGGSEVIHYSTESLKVFLENCKGEGIMAFYMEMA 420

Query: 418 DDTSFKVETIF-IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           D+    V   +  D+ ++  +D         + L  +K      + LK+ +++K    V+
Sbjct: 421 DNVIDSVSLSYKDDILLYIDKDH------VTDALELIKPVLGLNYVLKVIYDVKTLLKVI 474

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
               + +  F+DIM+MSY+L      H +  I    ++Y  K+ + + K++I +  +   
Sbjct: 475 P--DVEIVAFDDIMIMSYILSPSVHDHSLQEI----INYNVKQDVVNVKTAITLLLLHKL 528

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             +   +                    +L  +YER++KP+I V+  ME  G+ ID D+LK
Sbjct: 529 LKKNLFV-------------------NQLYTIYERVEKPLIRVLDSMEKVGMLIDIDILK 569

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S+  S+ +  LE  IY L+G +FN++S KQLG +LF K+      K  +G + T A+ 
Sbjct: 570 TLSSTFSEKVSVLENEIYRLAGTEFNIASSKQLGTVLFDKMGIKKSKKLSSGSYSTDAEV 629

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           L  +   +  I   IL+WR  +K+KSTY D+L   IN  + R+HTFYS+ ST TGRL+S 
Sbjct: 630 LNDLVFNEIEIADKILQWRHFTKLKSTYTDALGKQINSNSGRIHTFYSMISTATGRLSSS 689

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPI+++ G  IRRAF++    KL+SADYSQIELRI+AHIA +      F    D
Sbjct: 690 NPNLQNIPIRSEEGNAIRRAFVARKGYKLVSADYSQIELRIMAHIAGVQAFKDAFFLDQD 749

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH + A +IF      +   +RR AK+INF IIYG+S F LA QL I RSEA  YI  YF
Sbjct: 750 IHSITAEQIFCTQS--LDKNLRRKAKSINFGIIYGMSAFGLAKQLGISRSEANAYIDNYF 807

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P I  Y+   K + +  GY  TIFGR+    +INS  ++ RN +ERAAINAP+QG++
Sbjct: 808 KSYPEIQSYMNNIKIYAKTYGYTRTIFGRKCFIRDINSSNAAARNFSERAAINAPLQGTS 867

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + +MI +   +        ++LQ+HDEL+FE+ EE +  A ++I   ME      +
Sbjct: 868 ADIIKMSMIHLFDKIT----HGSLILQVHDELLFEILEEYVDYAVEVITKVME----GIV 919

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPLKV+I++  NW +
Sbjct: 920 KLSVPLKVDIRIGTNWAD 937


>gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22]
 gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22]
          Length = 886

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/985 (31%), Positives = 502/985 (50%), Gaps = 115/985 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA           DGL  NAI  F NML  ++    K++  S+
Sbjct: 3   QKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTDPSN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + + E+ G+ V I++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTLSKMGEEAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++E +                 E+
Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSVEKLY----------------EH 222

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  + S+              L+  ++ D +   L   L  ++    +         + 
Sbjct: 223 VDEMKKSK--------------LKENLINDKDKAILAKKLATIDRDSPVEVTLADTKLEE 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            NIE +         K    E      +  K                             
Sbjct: 269 PNIEDLRNLYERLGFKKFLAELGASGVSAGKQ---------------------------- 300

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                   ++ Y  +  T++    + K+      +F +     +   +     ++   D+
Sbjct: 301 -------ESEKYEYLELTRENIADLDKINE-KEVTFYLAMLGDNYHLAPLEGFSLKVSDK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                           ++ S+D            + L++  E++   K   +IK   + L
Sbjct: 353 ----------------IYVSKDVVLLQE------APLRQMLEDKKIKKNVFDIKRTYVGL 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDK 532
           HR  I   G + D++L SY++++  +S+D+  +A  +  Y+ K   E+    K       
Sbjct: 391 HRLDIDAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDDYSVKTDLEVYGKGKKQ---AV 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             D +  EH      VI +L   L  KL   +   +YE ++ P+  V+++MEITGI+++ 
Sbjct: 448 PEDDEFFEHLAAKVAVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q+  + +  L  LE  IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG + T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPKQLGHILFEKLNLPPIKKTKTG-YST 566

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LEQ+    +PI+  IL++RQ++KI++TY   L   I   + R+HT Y    T TGR
Sbjct: 567 SVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKGLLECIQPDS-RIHTRYLQTLTATGR 624

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIP +TD G++IR+AF+       + S DYSQ+ELR+LAH++    + + F
Sbjct: 625 LSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEAF 684

Query: 772 ENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           ++  DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R +A  
Sbjct: 685 KSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKT 744

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I  YF ++P I +Y++K     R+NGY ETI  RR +  +I+S   ++R+  ER AIN+
Sbjct: 745 FIDNYFEQYPQIKDYMDKAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINS 804

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI++ K L++  L TKM+LQ+HDEL+F+VP++E+ T  +I+   M+ 
Sbjct: 805 PIQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQS 864

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPL  +    +NW + 
Sbjct: 865 A----VKLDVPLIADSNWGHNWYDA 885


>gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 876

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/978 (30%), Positives = 476/978 (48%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA            +L     +      E + E+ + 
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIK----------LLNQFDTV------EGVYEHLD- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + +G +L   L+  +   L+++   T + D + I
Sbjct: 220 --------------------------EISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNVDFTSL----------------KEATIHFELDGGNYLRNNILKFSLFTGEKHIV 346

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +      +                      + L  + EN +  K+ ++ K   +  HR 
Sbjct: 347 INADDIINY----------------------AELVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  G+VET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+     +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAHKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
 gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
          Length = 876

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/978 (30%), Positives = 476/978 (48%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA            +L     +      E + E+ + 
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIK----------LLNQFDTV------EGVYEHLD- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + +G +L   L+  +   L+++   T + D + I
Sbjct: 220 --------------------------EISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNVDFTSL----------------KEATIHFELDGGNYLRNNILKFSLFTGEKHIV 346

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +      +                      + L  + EN +  K+ ++ K   +  HR 
Sbjct: 347 INADDIINY----------------------AELVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +                +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEVDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  G+VET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
          Length = 896

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/985 (31%), Positives = 502/985 (50%), Gaps = 115/985 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA           DGL  NAI  F NML  ++    K++  S+
Sbjct: 13  QKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTDPSN 68

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 69  VLVAFDAGKVTFRTKMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 128

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + + E+ G+ V I++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 129 IGTLSKMGEEAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGVTP 188

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++E +                 E+
Sbjct: 189 TEFIDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSVEKLY----------------EH 232

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  + S+              L+  ++ D +   L   L  ++    +         + 
Sbjct: 233 VDEMKKSK--------------LKENLINDKDKAILAKKLATIDRDSPVEVTLADTKLEE 278

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            NIE +         K    E      +  K                             
Sbjct: 279 PNIEDLRNLYERLGFKKFLAELGASGVSAGKQ---------------------------- 310

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                   ++ Y  +  T++    + K+      +F +     +   +     ++   D+
Sbjct: 311 -------ESEKYEYLELTRENIADLDKINE-KEVTFYLAMLGDNYHLAPLEGFSLKVSDK 362

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                           ++ S+D            + L++  E++   K   +IK   + L
Sbjct: 363 ----------------IYVSKDVVLLQE------APLRQMLEDKKIKKNVFDIKRTYVGL 400

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDK 532
           HR  I   G + D++L SY++++  +S+D+  +A  +  Y+ K   E+    K       
Sbjct: 401 HRLDIDAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDDYSVKTDLEVYGKGKKQ---AV 457

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             D +  EH      VI +L   L  KL   +   +YE ++ P+  V+++MEITGI+++ 
Sbjct: 458 PEDDEFFEHLAAKVAVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 517

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q+  + +  L  LE  IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG + T
Sbjct: 518 SVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPKQLGHILFEKLNLPPIKKTKTG-YST 576

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LEQ+    +PI+  IL++RQ++KI++TY   L   I   + R+HT Y    T TGR
Sbjct: 577 SVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKGLLECIQPDS-RIHTRYLQTLTATGR 634

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIP +TD G++IR+AF+       + S DYSQ+ELR+LAH++    + + F
Sbjct: 635 LSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEAF 694

Query: 772 ENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           ++  DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R +A  
Sbjct: 695 KSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKT 754

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I  YF ++P I +Y++K     R+NGY ETI  RR +  +I+S   ++R+  ER AIN+
Sbjct: 755 FIDNYFEQYPQIKDYMDKAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINS 814

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI++ K L++  L TKM+LQ+HDEL+F+VP++E+ T  +I+   M+ 
Sbjct: 815 PIQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQS 874

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPL  +    +NW + 
Sbjct: 875 A----VKLDVPLIADSNWGHNWYDA 895


>gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
 gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
          Length = 932

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/977 (28%), Positives = 458/977 (46%), Gaps = 71/977 (7%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S ++RAF+A P      DG P NA+ GF NM  K++     +         FD  
Sbjct: 16  VIDGNSLMHRAFHAVPPTMNAPDGSPTNAVFGFLNMFLKMVDEFSPDG----VVCAFDKG 71

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
               R E+ P YKA RP +   L  Q P+++    +  +P +E++G+E DDI+ T     
Sbjct: 72  HPKVRMEMLPQYKAQRPPMDPNLRAQFPMIKELLASLSVPVVELEGWEGDDILGTLARRG 131

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKMVCLQ 183
           E  G  + +++ D+D+ QLV+    +  T K       +  E V   + GI PE +    
Sbjct: 132 EAAGCDMYLVTGDRDMYQLVTDHVHVVSTRKGLSDIAIMTPESVDDLYHGITPELVPDFY 191

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS DNIPG+PGIG K A+ L+ +YG+L+ ++ +A  +K  K  E++  + + A +S
Sbjct: 192 GLKGDSSDNIPGVPGIGPKKASALIVQYGSLDEVIAHADEVKG-KMGESLRAHIDDALVS 250

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           RK+  + TD P+   L+ +     +   + + L AL    + NR       DAA  +  V
Sbjct: 251 RKIATIMTDAPVECDLDEVSFPAYDAASVSAALGALGIMAMQNRFLALLG-DAAASQAAV 309

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI--NSEQTPQKLFLERLQKLSQY 361
             +   E   ++++     D      + + ++    ++    E            K +  
Sbjct: 310 SKLELPEVLRVSLDASRAFDEAESNRESAEMNACFDELMRALEAGEWLGVAMEDDKEADA 369

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    +   + +  + + +   G  +  I  D         + +  +         
Sbjct: 370 LFGMTRRLWVATDRALLSFEEPIGPCGVFATDI--DCSHGVIPGVLGLLFAKGSVVSSDV 427

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             +  +   +                     +     +   L                  
Sbjct: 428 KALLHVLSPVDSSEP--------------ELMDPLDADPARL------------------ 455

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
                 D ++ +Y+LDS RS    A +A+ +L                 +  + +     
Sbjct: 456 -----FDTVVAAYLLDSVRSDFADAHLAETYLHAALPAAAG--------EDGAPADAPSA 502

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A  ++ +   L   L   L  +    ++ +++ P++ V++ ME  G+ +D   L   S E
Sbjct: 503 AARSAWLARILREPLAAALEAQGAEDIFTKIEMPLVRVLASMERAGMYVDPARLAAQSEE 562

Query: 602 ISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPS--GAKTKTGQWKTTAQDLE 658
           +S  +  L + I +L+G E+FNLSSP QL  +LF KL  P+    KT+ G + T A+ LE
Sbjct: 563 LSGQIAELSDRIRELAGGEEFNLSSPMQLSRVLFDKLGLPTAGLKKTQRGYYSTNAKVLE 622

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +   D  I++ ILE+R+ +KIKSTY D+L   + +   RVHT Y+   T TGRL+S  P
Sbjct: 623 DL-AKDYEIVRLILEYRERTKIKSTYLDTL-GALRETDGRVHTTYNQTITATGRLSSSNP 680

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP +++LG  +++AF        ++ DYSQIELR+LAH++    L   F    D H
Sbjct: 681 NLQNIPTRSELGHAVKKAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFH 740

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AA +FGV +E+V+PQ+R  AK +NF I+YG   + L+  L IP +EA + I  YF  
Sbjct: 741 AETAARVFGVPVEEVTPQLRSRAKAVNFGIVYGQQAYGLSQALDIPMAEAREMIDAYFRA 800

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+  Y+++T  F +Q GY ET++GRR    E+  P  + R   ER A+N P+QGSAAD
Sbjct: 801 YPGVRTYLDETVAFAKQTGYAETMYGRRRPIPELRVP--AQRMFGERTAMNHPMQGSAAD 858

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ V + L     A KM+LQ+HDEL FE P  E+     ++   ME        L
Sbjct: 859 IIKIAMVRVAERLRTEGFAAKMILQVHDELDFECPVGEVDALVAMVREEMEGVA----QL 914

Query: 959 RVPLKVNIKVSNNWQEE 975
           RVPL  +  V   W E 
Sbjct: 915 RVPLIADASVGETWAEA 931


>gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 876

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/978 (30%), Positives = 476/978 (48%), Gaps = 111/978 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+ G+ P ++
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA            +L     +      E + E+ + 
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIK----------LLNQFDTV------EGVYEHLD- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     + +G +L   L+  +   L+++   T + D + I
Sbjct: 220 --------------------------EISGKKLKEKLQNSKEDALMSKELATINVD-SPI 252

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E  + D   T       + E+ +    K          + +   E+T +           
Sbjct: 253 EVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDAIEKTFEI---------- 302

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +N  +T +                  A+     D  +   +  +  ++ T ++   
Sbjct: 303 ETSFDNVDFTSL----------------KEATIHFELDGGNYLRNNILKFSLFTGEKHIV 346

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +      +                      + L  + EN +  K+ ++ K   +  HR 
Sbjct: 347 INADDIINY----------------------AELVSWLENPNTKKVVYDAKKTYVASHRL 384

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           GI ++    DIML SY++D  R+  D+ S+   +     K+ +             D  +
Sbjct: 385 GIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVL 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +    ++ I      +  +L     + +   L+  +  ++S+ME  GI  D   L+++
Sbjct: 445 NPYVASITDAIYFAKPNMDKQLEEYNQVELLADLELSLAKILSEMEEIGIYTDVHDLEEM 504

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ 
Sbjct: 505 EKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVL 562

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +   G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++P
Sbjct: 563 EQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDP 621

Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DI
Sbjct: 622 NLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDI 681

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y  
Sbjct: 682 HTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLA 741

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FPG+ +Y+       +  G+VET+  RR +  +I S   ++R   ER A+N PIQGSAA
Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAA 801

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + 
Sbjct: 802 DIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQ 857

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPLKV+      W + 
Sbjct: 858 LDVPLKVDSSYGATWYDA 875


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/985 (31%), Positives = 499/985 (50%), Gaps = 120/985 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  E  L ++DG S ++RAFYA P L+   +G+  NA+ GF NML K+ +  + +    +
Sbjct: 1   MNDE-KLLILDGHSLMHRAFYALPDLTN-LEGVHTNAVYGFLNMLLKMKEEIKPD----Y 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+  Y +YKA R K+P  L  Q P+++   +   +   EI GFEADD+
Sbjct: 55  VVCTFDRSAPTFRHNKYSEYKAGRKKMPPELSEQFPVIKEILKMMSVSIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           + T +  AEK G  V I++ D+D +QL +    +  T K     E  D   +I+++G+ P
Sbjct: 115 MGTLSVFAEKNGIQVYIVTGDRDALQLATDKVKIVITKKGITQKEIYDRNRMIEEYGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++ L GD+ DNIPG+PG+G KTA  L+++Y                K  EN+ E 
Sbjct: 175 TQFIDVKGLMGDTSDNIPGVPGVGEKTAFKLIKQY----------------KSIENVYEN 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E     +KL     D               N  + I             ++AT      
Sbjct: 219 VEDIS-GKKLKENLKD---------------NMEQAI----------FSKKLATIM---- 248

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV +D+ + E+K      E D     K  +        SKI+     QK   +   
Sbjct: 249 -TNVPVEMDLESIESKE-----EYDAQGLKKVFEKLEFKSLISKIHGLNEIQKDKAQEFD 302

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      +T+I        +V  L+                     + I     D+
Sbjct: 303 ---------VEFTEIDTLHKFSDFVNSLKNN-----------------DLVYINFKVEDE 336

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +  +   ++ +FI L+    Q    +  N    + +   K  FENE   K+G+++K    
Sbjct: 337 ESYSRNYIDKVFISLNEKNFQIHINEIYNEDKNKAVELFKLLFENEGISKVGYDVKVPCS 396

Query: 475 VLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIPID 531
           +L++ GI  ++   DI + +Y++DS RS +++  I +++      E  +    K ++   
Sbjct: 397 ILYKMGIRFLKLEFDIKIAAYLIDSSRSDYELKDIIRQYTGVEISEDDEKFFSKETVLFS 456

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+                   +  L  K+    +  +  ++++P+I V++ ME  G ++D
Sbjct: 457 KV-------------------YSELTKKIEEAHMEELLYKVEQPLIYVLASMECEGFKVD 497

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +D L +   +    +  +++ IY LS E+FN++SPKQLG ILF KL  P   KTKTG + 
Sbjct: 498 KDKLVEQEGKFKIEIDKVQKEIYSLSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YS 556

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A+ LE++    +PI++ I+ +RQL+K+ STY + L   I +  + +H+ ++   T TG
Sbjct: 557 TNAEVLEKLK-DKHPIVEKIIYYRQLTKLYSTYIEGLKAVIQEDDK-IHSSFNQTVTTTG 614

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S EPNLQNIPIK ++G++IR+ F+       ++SADYSQIELR+LAHIA    L   
Sbjct: 615 RLSSTEPNLQNIPIKYEMGKEIRKIFVPENEDCVILSADYSQIELRVLAHIADDENLISA 674

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N  DIH   A+E+F V I++V+   R +AK +NF I+YGI  F LA  L+I R EA  
Sbjct: 675 FINHSDIHTKTASEVFKVPIDEVTSAQRSNAKAVNFGIVYGIGDFSLAKNLKISRKEAKL 734

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF R+P +  Y++      + N YV T+  RR    EI S    +R+  ER A+N 
Sbjct: 735 YIDTYFERYPKVKLYMDDIVKEAKVNSYVTTLMNRRRFIPEIKSSNKIVRSFGERLAMNT 794

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AM++V++ LE++KL +K++LQ+HDEL+  V +EEI     ++   MEK
Sbjct: 795 PIQGSAADIIKIAMVNVYRRLEENKLKSKLILQVHDELILNVYKEEIDNVKSVVKEEMEK 854

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
                + L+VPL+V+I V +NW E 
Sbjct: 855 V----LQLKVPLEVDISVGSNWYEA 875


>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
 gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
          Length = 897

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/980 (31%), Positives = 481/980 (49%), Gaps = 92/980 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DGS FI+RA++A P LS    G+P NA+ GF NML K L+    E   +H A++
Sbjct: 2   PTLTLIDGSGFIFRAYHAIPHLSTTK-GIPTNAVYGFTNMLLKALR----EHAPTHVALV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    +FR++I P+YKANRP+ P+ L  Q PLVR   +A  +P IE  GFEADDIIAT 
Sbjct: 57  LDAGRRSFRHDIDPEYKANRPEAPDDLASQFPLVRDVARALNVPVIEEPGFEADDIIATL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-----KEEKIDIEHVIKKWGIPPEKM 179
              A   G+ V +++ DKD  QLV     LYD +     +        V KK G+ PE++
Sbjct: 117 AGRARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V  Q++ GD IDN+PGI G+G  TAA L++ +G  E +L     I               
Sbjct: 177 VEYQSILGDKIDNVPGIAGVGEVTAAALIRHFGTAEAMLARPGEIP-------------- 222

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +SR                     +    ++++  + +   + +  VA   D D    
Sbjct: 223 AAVSR-------------------GGEKLRDKVVANAERIRTNRRL--VALRRDLDLPFA 261

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                     + +  A+ +E++    +K                 +TP+ +        +
Sbjct: 262 PEAFGRRPPDQERARALFSELEFSRLVKEL------PPPPPTARAETPETIDGRAALDAA 315

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              +                     +  G      +        +  + +A +       
Sbjct: 316 VAALV--------------------QAGGPVGLLPVLGEGPPRTAPLVGLAFA------- 348

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ L                ++   L+   E        H++K     L R 
Sbjct: 349 --GAGRAFYLPLGHRYL--GAPAPLAPPDVREGLRPLVE-AALPLHAHDLKAAAHALARL 403

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKSRKSSIPIDKISDS 536
           G++  G  ED  LMS +L   R  H +  +A++  S    R     +++ +  ++ +   
Sbjct: 404 GLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRSPADGAKRGAPGLEGLEVE 463

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +V   A   +  +  L   L   L  E+L  +Y  +++P++ V+ +ME TGI +D+  ++
Sbjct: 464 RVAAWAGACAASLPDLAAKLAEGLEAERLSPLYREVERPLVPVLVEMERTGILVDRGAME 523

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +SAE  +++  LE  I+  +G  FN++S ++L  +LF +L+ P   + KTG   +T QD
Sbjct: 524 GMSAEFGRSMQDLEARIHAAAGHPFNVASTRELAQVLFVELELPVVKRLKTG--PSTDQD 581

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +     + + + +LE R LSK+K TY D+LP  ++    R+HT +  A   TGRL+S 
Sbjct: 582 VLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSSS 641

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+L ++IR+AF++P   +L+SADYSQIELRILAH +    L Q F +  D
Sbjct: 642 DPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRED 701

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H   AAE FGV  E+V+P  RR AK +NF I YG+S F L+ +L +P SEA   I RYF
Sbjct: 702 VHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYF 761

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+ G+  YIE      R  G   T+FGR     EI +P  ++RN  ER AIN PIQG+A
Sbjct: 762 TRYAGVRRYIEWAVEEARAKGESRTLFGRARAMPEIGAPNPALRNAAERTAINTPIQGTA 821

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI VH +L   + A ++LLQ+HDELV EVPE E+     ++   ME A     
Sbjct: 822 ADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELEPVEALVRREMEGAA---- 877

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L+VPL+V +     W E +
Sbjct: 878 RLKVPLEVQVGHGQTWAEGH 897


>gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613]
          Length = 875

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/984 (32%), Positives = 499/984 (50%), Gaps = 119/984 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+    ++E    +
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM----KEEINPDY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+E Y DYKA R K+PE L  Q P+++    A  I   EI GFEADD+
Sbjct: 55  IVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIIKELLSALAINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ DKD +QL + +  +  T K     E  D   +++++G+ P
Sbjct: 115 IGTLSVFAEEKGIEVYIVTGDKDALQLATDSVKVVITKKGITEKEIYDKNRMVEEFGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +  N   IK KK        
Sbjct: 175 KEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVFENIENIKGKK-------- 226

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                              L   L       + ++   T  C+ 
Sbjct: 227 -----------------------------------LKENLHEYREQAIFSKKLATIICN- 250

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V +D++  + K              +  +F SL ++  K N  +T ++       
Sbjct: 251 -----VPIDMSLEDIKSKEEYDINKVREMFERLEFKSLMNKVGKGNEGETVEE------- 298

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     SY  IV+ ++ +     +            D    F  + I +   +  +
Sbjct: 299 --------EVSYKNIVSLEEFRDLKNNIIKYK------ENDLYLYFELEDIVLFSKSRVK 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +FK E   ID            N   ++ +   ++ FE++   KI ++ K  + +L
Sbjct: 345 TLYANFKDEVYRIDF-------EMLLNNTKEQFIEVCREMFESKEIKKITYDAKNPRTIL 397

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            + GI   G   DI L +Y+++  R  ++I+S+A ++L        E LK          
Sbjct: 398 RKLGIEFNGIKFDINLAAYLINPVRKEYEISSLASEYLFKNINREDEFLK---------- 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                     I+  N++  L+ +L  K+  + +  +  ++++P+ + +S ME  G ++D+
Sbjct: 448 ----------IKEVNIMPNLYKVLEEKIKEQDMEELLYKVEQPLTETLSAMETEGFKVDK 497

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D+L Q+  +    + S +  IY +S E+FN++SPKQLG ILF KL  P   KTKTG + T
Sbjct: 498 DILLQLEKKFKGEIESTQLEIYSMSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YST 556

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ L+++    +PII  I  +RQL+KI STY + L   I++  + +H+ ++   T TGR
Sbjct: 557 NAEVLDKLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDEDGK-IHSNFNQTVTATGR 614

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIPIK ++G++IR+ FI       ++SADYSQIELR+LAHI+    +   F
Sbjct: 615 LSSTEPNLQNIPIKYEMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAF 674

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   A+E+F V IE+V+P MR +AK +NF I+YGI  F L+  L I R EA  Y
Sbjct: 675 NEHDDIHTKTASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQY 734

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y  R+P +  Y+E       + GYV TI  RR +  E+ S    ++   ER A+N+P
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSP 794

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM++VH+ L++    + ++LQ+HDEL+  V ++E+     ++   ME+ 
Sbjct: 795 IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEMEQV 854

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
               + L+V L V+I + NNW E 
Sbjct: 855 ----LELKVGLDVDINIGNNWYEA 874


>gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6]
          Length = 857

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/949 (31%), Positives = 475/949 (50%), Gaps = 97/949 (10%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +  NAI GF  M  K+      E      AV+FD P  TFR E+Y  YKA RP +P  L 
Sbjct: 1   MYTNAIFGFAVMFRKMFAGKTPELG----AVVFDAPGPTFRQELYEAYKAQRPPMPTDLR 56

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            QLP +     A   P + + G+EADD+I T T  A + G  V I++ DKD  QL+ P  
Sbjct: 57  EQLPWIDRLVTAHQFPILRVPGYEADDVIGTLTRQALEAGHEVMIVAGDKDFAQLIGPRV 116

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            + DT+++   D E V KKWG+ PE+++   AL GD +DN+PG+PGIG K A  LL+ YG
Sbjct: 117 RMVDTLRDVTYDAELVRKKWGVRPEQIIDYLALVGDKVDNVPGVPGIGAKGAVALLERYG 176

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL 272
           +L  IL N   +K  ++ + + +  E A    +L      +   +PL            L
Sbjct: 177 DLAGILANLDDLKG-RQEQTLRDNRELA----QLCRELVTIDTAVPLAQ---------EL 222

Query: 273 ISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS 332
            S    +  T  +N +                              E+   + +      
Sbjct: 223 ASLRVRVPETSKLNELY----------------------------MELQFYSLLTEDAAQ 254

Query: 333 SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF 392
           +LS                            ++  Y  + +T  ++  +  L      + 
Sbjct: 255 ALSAAG-------------------------DDTDYQTLDSTLTLRTRLDALPNTTPVAV 289

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
             + +   A     + + ++    +          ++ L         G        L+ 
Sbjct: 290 WPVHEGSSAMMGALVGVGLAPAPGE--------AFYVPLVASDGGLGEG-------ALAL 334

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDS-GRSSHDIASIAQ 510
           L+ + E+   LK+ H+ K  +++L RYG+S+ G   D  L S+++D  G   H I  + +
Sbjct: 335 LRGWLEDSARLKVVHDSKRLRVLLARYGVSLSGVVADPRLESFLVDPTGLVPHRIDQLVK 394

Query: 511 KWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            +L  T    K +L S K +    +++ S     A + ++V++ +W  +R +L     L 
Sbjct: 395 AFLQRTVPPAKSVLGSGKKARRFAELAASVTGAWACQRADVVVTMWPQIRERLEEVDQLP 454

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
             + +D P+ +V++ ME+ G++++   L+++SAE    LL LE  I+  +G +FN++SPK
Sbjct: 455 HLQEVDLPLSEVLATMELAGVRVEPTELEEMSAEFRATLLQLEAEIWRQAGREFNVASPK 514

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF +L  P   +TKTG   +TA ++ +    ++PI   +L+ R+L+K+ +TY + 
Sbjct: 515 QLGVVLFEELNLPVIKRTKTGY--STAAEVLERLTREHPIAGLLLQHRKLAKLLTTYTEV 572

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           L   IN  T RVH  +      TGRL S  P++Q  P++T  G++IRRAFI  P  ++IS
Sbjct: 573 LRAAINPVTGRVHPTFQQTYAATGRLISTNPDIQKTPVRTPEGKRIRRAFIPAPGWRIIS 632

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD+SQIELR+LAH +    L + F    D+HR  AAE+FG   E V+   R  AKT+NF+
Sbjct: 633 ADWSQIELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDAQRSVAKTVNFA 692

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
            IYG     L  +L + R+EA  YI RYF  + G+ E++++T      +GYVET+ GRR 
Sbjct: 693 TIYGQGATALGQRLGLKRTEAKGYISRYFQAYAGVREWLDRTIEGALASGYVETLLGRRR 752

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
              E++S  + +R +  R A N PIQGSAAD+ +  M+++ K  +   L T+MLLQIHDE
Sbjct: 753 VIPELSSNSAMVRQVGMRMAANTPIQGSAADLCKLVMLTLAKRFQTRGLQTRMLLQIHDE 812

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           LVFE   +E+  + Q+I  +ME       +LRVPL+V+I V  NW E +
Sbjct: 813 LVFEAAPDEVDASCQLIREAMESVG----DLRVPLRVHIGVGANWAEAH 857


>gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly]
 gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly]
          Length = 922

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/978 (32%), Positives = 502/978 (51%), Gaps = 64/978 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             ++L+D  + I+R ++           G  V+A  GF   L+ +++  + E+      V
Sbjct: 2   KEIYLIDALNIIFRNYHVMKNNPLTNSKGENVSAFIGFFKTLFFIIKEKKPEN----LIV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E+QG+EADD+IA+
Sbjct: 58  TFDSETQTFRQKQYPSYKATRDAPPDNLIPQIHWIKEGLIKANIPMFELQGYEADDLIAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVC 181
           +T  AE+  +   IIS DKDL+QL+S  T ++        +++ ++VIKK+GI   ++  
Sbjct: 118 FTKKAEQNNYLTYIISPDKDLLQLISNQTKIFKIENSSFLEMNNDYVIKKFGINKSQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             ++ GD  DNIPGI GIG K A+ LL E+  L  I  N S I   K RE +L   E A 
Sbjct: 178 YLSIVGDPSDNIPGIKGIGQKGASKLLNEFHTLNGIYENLSLI-NNKYREILLREKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS KL+ L  D+ +   LE   LE+     +I   +    T LI    +           
Sbjct: 237 LSYKLISLVEDLELP-SLETFRLENL-KEDIILLFEEYSATTLIKSYKSLL--------- 285

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL-SQ 360
                               +   I T Q S      +K N E T               
Sbjct: 286 -------------------KKKNIINTMQKSIFDINKTKANKENTKDLQSTTLYANTLKT 326

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I+  +++   +++L+     +    T +++ + S  I I++S  +     
Sbjct: 327 IQEENVKYKTILKKEELDLLIEQLKKASYIAIDTETTSINVYESNIIGISVSFKE----- 381

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               E+ +I +      ++  KN++ KE I+    + F N     IG N K+D  VL R+
Sbjct: 382 ---FESYYIPI------ETKEKNSIGKEYIIQKFNELF-NSQPKLIGQNYKFDYKVLKRH 431

Query: 480 GISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G ++   + D M+ +YV+D   +   +  +A K+L +   +  +       +  I     
Sbjct: 432 GFNVISAYFDTMIAAYVIDPN-TKVSLDFLAAKYLMHKNIKYEEIVPQHSTLKDIPLEIA 490

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A E++++  +L+ +LR KL  + L  + + ++ P  +V+ +ME  GI +D + L Q 
Sbjct: 491 SNYAAEDADITFRLFNILRKKLKEDNLESLMKNIEMPFSNVIIEMEENGIYLDSNYLTQY 550

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E+ + L ++E  +    G +FNL+S KQL  ILF KL        K  +  +T   + 
Sbjct: 551 GHELEQELKTIENEVIQSIGIEFNLNSSKQLHTILFEKLNIIVP---KNVKQDSTDIKVL 607

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +  I+ ++ +RQL+K+K+TY D+L   IN++T ++HT +    T TGR++S  P
Sbjct: 608 ETIKDQHESIEKLINYRQLAKLKNTYTDNLIEFINEKTNKIHTNFIQTKTATGRISSTAP 667

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPIK + G+KIR AF        ISADYSQIEL ILAH+++   L + F +  DIH
Sbjct: 668 NLQNIPIKNERGRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEAFTHKKDIH 727

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+++F V+   ++P MRR AK+INF IIY +S FRL+ +L I R EA ++I  YF+ 
Sbjct: 728 IQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQELSIKREEAQNFIDSYFNL 787

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +  I  +I+   +FV+QNGY ET+  RR +  EINS     R   ER AIN+ IQGSA+D
Sbjct: 788 YSKIKTFIQNQIDFVKQNGYSETLLKRRRYIREINSQNYLERTGAERMAINSIIQGSASD 847

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI V+   +++ L +K+LLQ+HDE++ E PEEE   A  II   ME A      L
Sbjct: 848 IMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIESPEEECEKAQIIIKEMMENA----YPL 903

Query: 959 RVPLKVNIKVSNNWQEEN 976
           ++PLK NI+   +W + +
Sbjct: 904 KIPLKTNIETGKSWGDIH 921


>gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
 gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
          Length = 986

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1029 (28%), Positives = 478/1029 (46%), Gaps = 103/1029 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
             +  L LVDG S  +R+FYA            DG P +   GF   L     ++ K   
Sbjct: 5   ANKPLLLLVDGHSLAFRSFYAFSKGGEGGLATKDGTPTSVTYGFLKALL----DNCKGLS 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFE 116
                + FD    TFR++   +YKANR   P++    L  ++   +    +P     G+E
Sbjct: 61  PQGIVIAFDTAEPTFRHQADVNYKANRDVAPDIFFQDLKQLQEILENNLQLPLCLAPGYE 120

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIE 166
           ADD++ T    A ++G+ V I+S D+DL QLV                        ID  
Sbjct: 121 ADDVLGTLANQASRDGWGVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKNSGPSLIDEA 180

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V+ K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL+E G+L+ I    + ++ 
Sbjct: 181 GVLSKLGVAPSKVVELKALTGDSSDNIPGVKGVGPKTAITLLKENGDLDGIYNALAEVEA 240

Query: 227 -----------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
                         +  +    + A LS  L  +  D+P+      L L   +   L   
Sbjct: 241 EGEKASRGAIKGALKSKLSNDRDNAYLSLHLAEILVDIPLPKAP-RLELGSVDNDGLTDR 299

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           L ALE   L+ +V +            V   ++   K    E E  R  T      SS  
Sbjct: 300 LSALELNSLVRQVPS-----------FVATFSSGGFKANRHELEPSRSATSAAEPESSTE 348

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI----GSAS 391
            + S  N     +                      I N +++Q+ V++L          +
Sbjct: 349 TKASNDNELPALEP-------------------QLITNPEELQELVKRLMGCRDRLKPVA 389

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK----NTLTK 447
               T  ++ F ++ + + +   +   D +      +I +  H                +
Sbjct: 390 IDTETTALNPFCAELVGLGVCWGEGLQDLA------YIPIGHHPPAALLDADAACQLPLE 443

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506
            +L  +  +  +    K   N KYD+L+L R+G+++ G   D +L  Y+ D+    H + 
Sbjct: 444 AVLKAIAPWLASNDHPKALQNAKYDRLILLRHGLALEGVVMDTLLADYLRDAAA-KHGLE 502

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EK 564
            +A++    T     +          ++      +   + ++  +L + LR +L     +
Sbjct: 503 VMAEREFKITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLAIRLRAQLENMGAQ 562

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           LL + E++++P+  V++ ME TGI+ID   LK++S E+   L  LE+   + +G  FNL+
Sbjct: 563 LLPLLEQVEQPLEPVLALMEATGIRIDLPYLKELSIELGNTLEKLEQQAQEAAGVNFNLA 622

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG++LF  L        +T    +T  ++ +    D+P++  +LE R LSK++STY
Sbjct: 623 SPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKLEADHPVVPLVLEHRVLSKLRSTY 682

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+     K
Sbjct: 683 VDALPQLVESETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWK 742

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+SADYSQIELRIL H++    L + F N  D+H + A  +  ++ ++VS   RR  KTI
Sbjct: 743 LLSADYSQIELRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSEDERRLGKTI 800

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF +IYG+   R +    + ++EA D++ RY  R+  +  ++E  +      GYVET+ G
Sbjct: 801 NFGVIYGMGAQRFSRSTGLSQAEAKDFLSRYKQRYAKVFTFLELQERLALSKGYVETLLG 860

Query: 865 RRIHYDEIN------------------SPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           RR  +                      + +  +     RAA NAPIQGS+ADI + AM+ 
Sbjct: 861 RRRPFHFDRNGLGRLLGKDPMDIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQ 920

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           + + L    L  ++LLQ+HDELV EV    +    Q+++ +MEKA    + L VPL V  
Sbjct: 921 LQQQLTAADLPARLLLQVHDELVLEVDPTALEDVQQLVMQTMEKA----VELSVPLVVET 976

Query: 967 KVSNNWQEE 975
              +NW + 
Sbjct: 977 GTGDNWMDA 985


>gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
 gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
          Length = 879

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/985 (32%), Positives = 502/985 (50%), Gaps = 117/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS +  G+  NA+ GF  +L K+L+  +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFTTILMKMLEEEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + +YK  R K P  L  QLP +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHKTFKEYKGGRQKTPPELSEQLPFIRELLDAYRISRYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V I S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKIFSGDKDLTQLATEGTTVAITKKGITDVEYYTPEHVREKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNI   PG+                        + +K   + + + 
Sbjct: 176 EQIIDMKGLMGDSSDNI---PGV----------------------PGVGEKTAIKLLKQ- 209

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                         T   +   ++ +      G +L   L+  +   L+++   T   +A
Sbjct: 210 ------------FHTVEELLSSIDEVS-----GKKLKEKLEEFKEQALMSKELATITTEA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + +++   +G   E  +      K   F SL ++  +   E+  ++L    + 
Sbjct: 253 ----PLEVSLDSLGYEGFDREAVVK---IFKDLGFHSLLERIGEEAGEKEEEQLEEIDVM 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +    +  +                      AS  +     +   +  +  +I   + 
Sbjct: 306 IKTDITDDLFA--------------------SPASLVVEQLGDNYHEAPILGFSI-VNEH 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 +   +  D                       K++ E+E   K   + K   + L
Sbjct: 345 GAFFIPEETAVQSD---------------------CFKEWAEDESKKKWVFDAKRAAVAL 383

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPID 531
              GI ++G   D++L +Y+++ G S  D+AS+A++   +          K  K ++P  
Sbjct: 384 RWRGIELKGAEFDVLLAAYIINPGHSYDDVASVAKEHQLHIVSADEAVYGKGAKQAVP-- 441

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              + ++ +H    +  I  L   L  +L   + L ++E L+ P+  ++ +ME  G+Q+D
Sbjct: 442 --DEKELADHLARKAKAISLLREKLLDELEENEQLELFEALEMPLAHILGEMESIGVQVD 499

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D LK++  E+S  L   E+ I++ +GE FN++SPKQLG ILF KL  P   KTKTG   
Sbjct: 500 VDRLKKMGEELSAKLAEYEKKIHESAGETFNINSPKQLGVILFEKLGLPVVKKTKTGY-- 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + II++IL +RQ+ K++STY + L   I K + +VHT ++ A T TG
Sbjct: 558 STSADVLEKLRDKHVIIEDILHYRQIGKLQSTYVEGLLKVIKKDSHKVHTRFNQALTQTG 617

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI+K   L + 
Sbjct: 618 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEA 677

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N +D+H   A ++F V+ E+V+P MRR AK +NF I+YGIS + L+  L I R EAA 
Sbjct: 678 FTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAA 737

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYFH F G+ EY+E+T    +Q GYV T+  RR +  E+ S   ++R+  ER A+N 
Sbjct: 738 FIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRRRYIPELTSRNFNLRSFAERTAMNT 797

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++  L  K+LLQ+HDEL+FE PE+EI    +++   ME 
Sbjct: 798 PIQGSAADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEH 857

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPLKV+     +W + 
Sbjct: 858 A----LELDVPLKVDCASGPSWYDA 878


>gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580]
          Length = 879

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/985 (32%), Positives = 502/985 (50%), Gaps = 117/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L LVDG+S  YRAF+A PLLS +  G+  NA+ GF  +L K+L+  +     +H
Sbjct: 1   MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFTTILMKMLEEEK----PTH 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + +YK  R K P  L  QLP +R    A+ I   E++ +EADDI
Sbjct: 56  MLVAFDAGKTTFRHKTFKEYKGGRQKTPPELSEQLPFIRELLDAYRISRYELENYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AEK+GF V I S DKDL QL +  T +  T K     E    EHV +K+G+ P
Sbjct: 116 IGTLAKSAEKDGFEVKIFSGDKDLTQLATEGTTVAITKKGITDVEYYTPEHVREKYGLTP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+++ ++ L GDS DNI   PG+                        + +K   + + + 
Sbjct: 176 EQIIDMKGLMGDSSDNI---PGV----------------------PGVGEKTAIKLLKQ- 209

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                         T   +   ++ +      G +L   L+  +   L+++   T   +A
Sbjct: 210 ------------FHTVEELLSSIDEVS-----GKKLKEKLEEFKEQALMSKELATITTEA 252

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ + +++   +G   E  +      K   F SL ++  +   E+  ++L    + 
Sbjct: 253 ----PLEVSLDSLGYEGFDREAVVK---IFKDLGFHSLLERIGEEAGEKEEEQLEEIDVM 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +    +  +                      AS  +     +   +  +  +I   + 
Sbjct: 306 IKTDITDDLFA--------------------SPASLVVEQLGDNYHEAPILGFSI-VNEH 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 +   +  D                       K++ E+E   K   + K   + L
Sbjct: 345 GAFFIPEETAVQSD---------------------CFKEWAEDESKKKWVFDAKRAAVAL 383

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPID 531
              GI ++G   D++L +Y+++ G S  D+AS+A++   +          K  K ++P  
Sbjct: 384 RWRGIELKGAEFDVLLAAYIINPGHSYDDVASVAKEHQLHIVSADEAVYGKGAKQAVP-- 441

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              + ++ +H    +  I  L   L  +L   + L ++E L+ P+  ++ +ME  G+Q+D
Sbjct: 442 --DEKELADHLARKAKAISLLREKLLDELEENEQLELFEALEMPLAHILGEMESIGVQVD 499

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D LK++  E+S  L   E+ I++ +GE FN++SPKQLG ILF KL  P   KTKTG   
Sbjct: 500 VDRLKKMGEELSAKLAEYEKKIHESAGETFNINSPKQLGVILFDKLGLPVVKKTKTGY-- 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ D+ +     + II++IL +RQ+ K++STY + L   I K + +VHT ++ A T TG
Sbjct: 558 STSADVLEKLRDKHVIIEDILHYRQIGKLQSTYVEGLLKVIKKDSHKVHTRFNQALTQTG 617

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHI+K   L + 
Sbjct: 618 RLSSTDPNLQNIPIRLEEGRKIRQAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEA 677

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N +D+H   A ++F V+ E+V+P MRR AK +NF I+YGIS + L+  L I R EAA 
Sbjct: 678 FTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAA 737

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+RYFH F G+ EY+E+T    +Q GYV T+  RR +  E+ S   ++R+  ER A+N 
Sbjct: 738 FIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRRRYIPELTSRNFNLRSFAERTAMNT 797

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI ++AMI +   L++  L  K+LLQ+HDEL+FE PE+EI    +++   ME 
Sbjct: 798 PIQGSAADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEH 857

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPLKV+     +W + 
Sbjct: 858 A----LELDVPLKVDCASGPSWYDA 878


>gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel]
 gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel]
          Length = 860

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/968 (34%), Positives = 511/968 (52%), Gaps = 117/968 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++D    ++RA+YA P LS   +G+P+  + GF NML K ++       A++  V+F
Sbjct: 3   TFTIIDAYGLLFRAYYALPNLST-SNGVPIGGVYGFINMLLKYIE----VHTANYLVVVF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR++IYP YK+NR K+PE L+ Q PL+R A  A  I   E+ G+EADD+IAT +
Sbjct: 58  DTGGKNFRHDIYPQYKSNRIKLPEDLISQFPLLREAVNALNISYEEVAGYEADDVIATLS 117

Query: 126 YIAEK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               K +   VT++++DKDL+QL+     ++D VK + I  + V  K+GI   K++   +
Sbjct: 118 KNYSKFDDIKVTVVTSDKDLLQLLEHNIHIFDPVKNKYIVEDDVQDKFGISSSKLLDFLS 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           LTGD+ DNIPG+P IG KTAA LL  +G+L+N+L     I++ K RE+I++Y + A LSR
Sbjct: 178 LTGDTSDNIPGVPSIGIKTAAKLLNNFGSLDNLLSQPHAIEKNKCRESIIKYQDQAILSR 237

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L+ L   V +   +E  I    +  +L+ FL                            
Sbjct: 238 QLLTLCDTVNLDNNIEKYISRIPDTQKLVKFL---------------------------- 269

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                 K  +  SL ++  KI                 +    N
Sbjct: 270 ----------------------KKYELQSLINKIGKIFKTDAFTVYQKSGYNNENSIKTN 307

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y+     ++++ +++  +  G  +  I         +   ++++S  +       K 
Sbjct: 308 VIPYSS----EELKTFIENCKNEGIIALYIDIT-----DNTINSMSLSYKEGTILYINKE 358

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             I                      L  +K  F  +H LK+ +++K    ++ +   ++ 
Sbjct: 359 HIIH--------------------ALDLIKPLFSLDHILKVMYDVKTLFKII-QEDTNIT 397

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
            F+DI++MSY LD G   H + +I  +           + K  I  + I+          
Sbjct: 398 AFDDILIMSYSLDVGLHDHTLKNIIIR----------NTDKHDITNENIT---------- 437

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            ++ +L L   LR  L   +L  +Y R++KP+I+V+  ME  GI ID  +L ++S+  S 
Sbjct: 438 -ASTLLSLHTALRRNLFTNQLCTIYYRIEKPLINVLHNMEKIGIMIDGSILDKLSSTFSD 496

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  LEE IY LSGE+FN++S +QL  ILF K+    G K  +G + T A+ L ++    
Sbjct: 497 KISVLEEKIYKLSGEEFNIASSRQLSTILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNG 556

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
             I   IL+WR  +K+K+TY D L   I+  T RVHTFYS+ ST+TGRL+S  PNLQNIP
Sbjct: 557 VEIADEILKWRHFTKLKNTYTDVLAKQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIP 616

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           I+++ G  IR AFI+    KLISADYSQIELRI+AHIA +      F    DIH + A +
Sbjct: 617 IRSEEGNAIRNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQ 676

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           IF  N + +  ++RR AK+INF IIYGISPF LA QL I RSEA+ +I+ YF  +P I  
Sbjct: 677 IF--NTQNIDKKLRRKAKSINFGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKS 734

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           YIE  K + R +GY  T+FGR+    +INS   ++RN +ERAA+NAP+QG++ADI + +M
Sbjct: 735 YIEDIKVYARTHGYTRTVFGRKCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSM 794

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I +   L+       M+LQ+HDEL+FEVPE+ +    ++I   ME      + L VPLKV
Sbjct: 795 IHLFDRLKT----GYMILQVHDELLFEVPEDHVDNTVKLIKEVME----GIVKLSVPLKV 846

Query: 965 NIKVSNNW 972
           +I + +NW
Sbjct: 847 DITIGDNW 854


>gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106]
 gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106]
          Length = 927

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/963 (31%), Positives = 485/963 (50%), Gaps = 76/963 (7%)

Query: 51  NSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAI 110
           ++ K     + A+ FD    TFR+E    YKANR + PE  +  +  ++   +   +P I
Sbjct: 2   DTIKTYKPEYLAIAFDLGEPTFRHEADATYKANRSETPEDFIEDICHLQAVLEGLNVPII 61

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKI 163
              G+EADD+I T      + G+AV ++S D+DL QL+                 K  + 
Sbjct: 62  TAAGYEADDVIGTLAKQGREAGYAVKVLSGDQDLFQLIDGDEQISVLHLSPGKGNKTIEF 121

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
            I++V+ K  I PE+++  +AL GD  DNIPG+ GIG KTA  LL EY +L+ I  +  +
Sbjct: 122 KIQNVVDKLQIKPEQLIDYKALCGDKSDNIPGVRGIGDKTAVQLLSEYNSLDEIYASLDQ 181

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           IK    R+ + +  E A  S+++  +  DVP+ I +        +  ++I  LK LEF  
Sbjct: 182 IKAAT-RKKLEDGKEAAYHSQRMATIIQDVPLKISVADCQFSKLDFSQIIPKLKELEFWS 240

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
            +         +A + +      + TE+K I  E+      T  +             N 
Sbjct: 241 FVE--------EAESQQVFEETSSQTEDKTINSESVSSESETSDSEGLD---------ND 283

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTM 399
           EQ     + E                 I   K +Q+ V+ LET        ++   T  +
Sbjct: 284 EQLSFWSYEETQAAQKVAEQKLIHPEIIQTEKQLQELVKILETFTDKNNPVAWDTETTAL 343

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           +   +K + I      +K + +      +I L   T     G     + +L  L+   E+
Sbjct: 344 EPRDAKLVGIGCCWGSEKTEIA------YIPLEHKT-----GNQLKKETVLEALRPILES 392

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
             + K   N K+D+L+    GI++ G   D ML SYVL+   S H++  +++K+L     
Sbjct: 393 NKYPKALQNAKFDRLIFKVQGINLAGVVFDTMLASYVLNPDDS-HNLTELSRKYLDSGI- 450

Query: 519 EILKSRK-----SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERL 572
            + KS K         I  +      E+   +      +   LR +L    +L  +   +
Sbjct: 451 -LAKSYKQLSLSKKQTIADLDIPTAAEYCGLDVYATYLIVPKLRKELQDFPELHKLLLDI 509

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           ++P+  V+++ME  GI+I+ D LKQ+S+++ K L  +E+  Y  +G +FNL SPKQL  +
Sbjct: 510 EQPLEPVLAEMEYQGIRINVDYLKQLSSQLEKKLEEIEKQAYQEAGTEFNLGSPKQLSKL 569

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF  L+  +    KT    +T   + +   GD+PII +ILE R L+K+KSTY D+LP  +
Sbjct: 570 LFETLELSTKKSRKTKTGYSTDAKVLEKLKGDHPIIDSILEHRTLAKLKSTYVDALPELV 629

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           + +TQR+HT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+  P   L+SADYSQ
Sbjct: 630 HPQTQRIHTDFNQAITTTGRLSSSNPNLQNIPIRTEFSRQIRQAFLPEPGWLLVSADYSQ 689

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYG 811
           IELRILAH++    L + ++ + DIH + A  +F   +I+ V+P+ RR  KTINF +IYG
Sbjct: 690 IELRILAHLSDEPILVEAYKTNRDIHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYG 749

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +   R + ++++  ++A ++I+R+  ++  + EY+E+ K      GYV T+ GRR ++  
Sbjct: 750 MGALRFSREMKVNTNKAKEFIERFNQQYEKLFEYLEEQKKQAISQGYVTTLLGRRRYFHF 809

Query: 872 INSPKSSIR-------------------NINERAAINAPIQGSAADITRRAMISVHKSLE 912
            +    +++                       RAA NAPIQGS+ADI + AM+ +   L+
Sbjct: 810 ESPSLKALKESPLEDIPLDELKKIGQNDAQFLRAAANAPIQGSSADIIKIAMVKLRDVLQ 869

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                 K+LLQ+HDELVFEVP EE       I  +ME A     +L+VPL V+I   +NW
Sbjct: 870 --NYRAKLLLQVHDELVFEVPPEEWEELQPQIKQTMEDA----YSLKVPLLVDIHAGDNW 923

Query: 973 QEE 975
            E 
Sbjct: 924 MEA 926


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/977 (30%), Positives = 479/977 (49%), Gaps = 95/977 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L+++D S +IYR+++A   ++    G   NA+ GF   + KL+    K+   +H   +
Sbjct: 2   DKLYILDASGYIYRSYFAIRQMTNAR-GESTNALFGFIRSVLKLI----KDFNPTHLVAV 56

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R E+YP YKA+R ++P+ LL Q+   +   Q  GIP + + G EADD + +
Sbjct: 57  FDGPNNSQKRTELYPAYKAHRKEMPKDLLYQILWSQRFCQLMGIPELMVPGVEADDTMGS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCL 182
               A        I ++DKD+ QLVS    + +T K+   ID   V +++G+ P +M+  
Sbjct: 117 IAKWAATLNTTAYICTSDKDMCQLVSNQILILNTFKDNLIIDANGVKEQFGVMPAQMIDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            A+ GD+ DNIPG+ G                            K   + + ++      
Sbjct: 177 LAIIGDASDNIPGLTGF-------------------------GPKTAADLLEKFGSL--- 208

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                    D  +  PLE    +  +       +   E   L  ++      D     P 
Sbjct: 209 ---------DYILEHPLEVSGKKKQDT-----LISEKEKVLLSKKLVI---VDTTVSFPN 251

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
             D     +       E   +       FSSL  +   + S  +   L  +         
Sbjct: 252 QEDFFKLTSPAYQSLKEFYAE-----MNFSSLIRELEAVKSGISFSDLESQ--------- 297

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            N   Y  + + + +   +  L           T  +    ++ + I +    +K     
Sbjct: 298 -NEVVYQLVNDEETLVNLISYLSQQKEICLDTETTDLRPLEAQLVGIGLGVEPKK----- 351

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                +I L+   + D          +LS LK   EN      GHN KYD  VL  + IS
Sbjct: 352 ---AWYIPLNGQLNGDF---------VLSQLKPLLENPSIGFYGHNFKYDYHVLRNHNIS 399

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQV 538
           +     D +L SY+L+S +  H +  +A +         +E++   K+ + +  ++  ++
Sbjct: 400 VANISFDTILASYLLNSHKRQHSLDHLALELFDKVKIAIQELIGKGKNQLNMKNVALDKI 459

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +  E+ +  ++L  +L  +L   KL  +   L+ P++ V++QME  GI ID   LK +
Sbjct: 460 CHYCCEDVDYTIRLKNILLSQLEERKLTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHL 519

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S  I + +  LE+NIY L+GE FNL+SPKQL  ILF KL      K  TG   +T  ++ 
Sbjct: 520 SQFIGQEIHCLEQNIYALAGEIFNLNSPKQLSQILFHKLGIKPPKKIATG--HSTNAEVL 577

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +I     PI + +LE+R L K++STY +SLP  +N +T R+H  ++ +   TGRL+  +P
Sbjct: 578 EILKHVYPIAEKLLEYRTLEKLRSTYVNSLPLQVNAKTGRIHCNFNQSMAATGRLSCQDP 637

Query: 719 NLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++T++G++IR AF         +SADYSQIELR+LAH+++   L + F ++ DI
Sbjct: 638 NLQNIPVRTEVGRQIREAFRPEKEDWSYLSADYSQIELRLLAHLSEDPVLIKAFLSNEDI 697

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H+  A+ IF V +++VS + R  AK +NF +IYG   F LA +L I    AA +I+RYF 
Sbjct: 698 HKYTASLIFDVPLQQVSSEQRYQAKAVNFGLIYGQQAFGLAHELGIDTKTAAAFIQRYFE 757

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+  + E++E  K   R+ G   T++GR     EI S  + IR   +R A+N PIQG+ A
Sbjct: 758 RYGKVKEFLEACKQSARETGKAVTMYGRERLLPEIRSQNAMIRATADRFAVNTPIQGTQA 817

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + AM+ ++K L   K    M+LQIHDEL+FEVP +E+ + S ++ ++ME      IN
Sbjct: 818 DLIKMAMLKINKLLIQEKKKGFMILQIHDELIFEVPNQELESISHLVKNTMEN----IIN 873

Query: 958 LRVPLKVNIKVSNNWQE 974
           L+VPL VNI +  NW+E
Sbjct: 874 LKVPLIVNIHIGKNWKE 890


>gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
 gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
          Length = 911

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/992 (31%), Positives = 507/992 (51%), Gaps = 118/992 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   L L+DG+S  +RAFYA          H GL  NA+  F N   ++++    +  
Sbjct: 20  MTK--TLLLIDGNSLAFRAFYAMYNQLDRMVAHTGLHTNALVAFNNFFDQVVEKMNPD-- 75

Query: 58  ASHFAVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
             +  V +D      TFR +I+ DYK +R   P  L  Q P +R      GI + E+ GF
Sbjct: 76  --YALVAWDAGKGATTFRAKIFDDYKGDRQTTPPELSEQFPYLRKMVDLHGIHSYELPGF 133

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADDII TY+ +AEK G   TII+ D+DL QLV+    +  T K     ++   + + +K
Sbjct: 134 EADDIIGTYSKLAEKAGLKTTIITGDRDLTQLVTDNVSVNVTKKGVTELDRYTPKFLAEK 193

Query: 172 WG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           WG I P +++ +++LTGD+ D+ PG+  +G KTA  LL E+G+L+ I  +   +K  K +
Sbjct: 194 WGGITPSQVIEMKSLTGDTSDHYPGVTKVGEKTAIKLLNEFGSLDGIYQHIDSMKTSKLK 253

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           ENIL   E+A  + +L  +RTD P+                       LE  +LIN+   
Sbjct: 254 ENILNDKESAYRAHELATIRTDAPV----------------------ELEMKELINQ--- 288

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                                        I+    I   +      Q +KI+S Q    +
Sbjct: 289 ----------------------------PINFQELIPFYEELDFKVQLAKIHSMQKAGMV 320

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG-SASFKIITDTMDAFHSKPIAI 409
             ++ ++ +           +  T+     +  L  I    +    TD+ +   +K   I
Sbjct: 321 GQDQEEEKN-----------VQVTELKAANLDHLSEIKNYLTVYFQTDSDNYHTAK---I 366

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           +   +  ++D  F             S+D    N+      S ++K F+     K   N 
Sbjct: 367 SAFVVGNENDGYFA------------SRDLELLNS------SVVRKLFK-GDLPKYVFNA 407

Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRK 525
           K   ++L+R G+ +   + D +L+SY+LD+  + + +A++A ++   L    +      K
Sbjct: 408 KELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEVYGSGVK 467

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             IP +   +  +  H    ++ I +L      KL   +   +Y +++ P+  V++ MEI
Sbjct: 468 FKIPEN---NETLFSHMANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEI 524

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI++DQ  LK++  E  + +  LE+ IY+ +G++FN++SPKQL D+LF  +K P   KT
Sbjct: 525 NGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQEFNINSPKQLADLLFVHMKIPPIKKT 584

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG   +TA ++ +      P +  IL++RQL+K+ STY   L   +N    ++HT Y  
Sbjct: 585 KTGY--STAANVLEELAEKYPFVGLILQYRQLAKLNSTYVKGLLEVVNPDDSKIHTRYLQ 642

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S++PN+QNIP + + G++IR+AF+      ++  +DYSQIELR+LAH+   
Sbjct: 643 TLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGD 702

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             L + FE+  DIH   A  IFG++ ++ ++   RR AK +NF I+YGIS F LA +L I
Sbjct: 703 ENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGI 762

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R E  + I+ YFH FP +  +I+       + GYVETI  RR +  +I+S   ++R+  
Sbjct: 763 SRIEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFA 822

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A N PIQGSAADI + AMI + ++L+D+ L  KMLLQ+HDEL+FE P++EI    ++
Sbjct: 823 ERTATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEEL 882

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +   M+ A    + L VPL+V      NW +E
Sbjct: 883 VPKVMDSA----VKLNVPLRVEAHHGVNWYDE 910


>gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 884

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/974 (31%), Positives = 486/974 (49%), Gaps = 109/974 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +  + +    + AV 
Sbjct: 12  KKLMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEIKPD----YIAVA 66

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +G+E DDI+ + 
Sbjct: 67  FDKGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGYEGDDILGSL 126

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           +        AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++
Sbjct: 127 SKKFGSSDLAVQIITGDRDNLQLVTDYSHVFLTKKGISDMLEVTLDNMTELYGYGPDKVI 186

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GDS DNIPG+PG+G KTA  L+ EYG+LE++  N   I  KK +E ++E  E A
Sbjct: 187 EMKALMGDSSDNIPGVPGVGEKTALKLINEYGDLESVYENIDNISGKKLKERLVENKELA 246

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                                       ++R   T   D     
Sbjct: 247 -------------------------------------------FLSRQLATIKTD----- 258

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              +D++ T ++ +      +     +T  F+ L+ + + +   +         L  +++
Sbjct: 259 ---MDLSYTLDQFVQNFHLGEVKPMFETLGFTKLTPRLASVMGSEGGDAEDFGGLFSMAE 315

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                    KI +  D     +      +    IITD    F +    I  + ++  +  
Sbjct: 316 EI-------KIEDLLDASALTEDFYKNKTIGVHIITDGKAPFRT----ITSAFINNGESI 364

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                +    L    +   T   T +KE++  L             H+      +     
Sbjct: 365 IKLDGSHNDKLLNALNGAKTVVTTQSKELMEAL------------CHDEPAQIRLYEN-- 410

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
             +    D+ LM+Y+LD  R+++    + +++              S+P   I+   V  
Sbjct: 411 -GVARIHDVSLMAYLLDPTRTNYGYLYLTERF--------------SVP--SIATGSVDV 453

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             +     +L +       L  E L  +Y  ++ P+I  +  ME  GI ID   L++ + 
Sbjct: 454 ECVSMVKALLAMDDAAVKALQDESLWDLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTI 513

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +    L ++++ IY+L+GE FN++SPKQLG ILF K+  P   KTKTG   +T  ++  +
Sbjct: 514 KFKAELEAVQQEIYELAGETFNINSPKQLGIILFEKMNLPVIKKTKTGY--STDAEVLDM 571

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++PI++ IL +R ++K+ STY + L   IN  T R+HT ++   T TGRL+S +PNL
Sbjct: 572 LRHESPIVEKILAYRSVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSSDPNL 631

Query: 721 QNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F        L+SADYSQIELRILAH++    L + F +  DIHR
Sbjct: 632 QNIPVRTEKGREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIKAFNDGKDIHR 691

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G + ++V+ + R HAK +NF IIYGIS F L+  L I R EA +YI+ YF R+
Sbjct: 692 FTAAEVLGKSQDEVTSEERSHAKAVNFGIIYGISDFGLSRDLGITRQEAKNYIELYFSRY 751

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY++       + G V T+FGR     +INS   + R+  ER A+N PIQG+AADI
Sbjct: 752 PKVKEYMDNMVTEAHETGKVRTMFGRMRELPDINSRNFNRRSFAERTAMNTPIQGTAADI 811

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM  V   LE+    +++LLQ+HDELV EV  EE+     ++  +ME      + L 
Sbjct: 812 IKLAMNKVESILEEKTFKSRLLLQVHDELVLEVVNEELDAIQTLLKETMES----IVELH 867

Query: 960 VPLKVNIKVSNNWQ 973
           VPL V++  + NW 
Sbjct: 868 VPLIVDVHNAENWA 881


>gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
 gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
          Length = 886

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/986 (32%), Positives = 508/986 (51%), Gaps = 117/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA           DGL  NAI  F NML  +L    K+   ++
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIL----KQVDPTN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR  +Y DYK  R K P  LL Q+P++R      GI + E++ +EADDI
Sbjct: 59  ILVAFDAGKVTFRTAMYKDYKGGRQKTPSELLEQMPVIREMLTDLGITSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + + E  G+ VT+++ D+DL QL S  T +  T       E    EH+ +  GI P
Sbjct: 119 IGTLSKMGEDAGYEVTVVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGITP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+ GIG KTA+ L+Q+YG++EN+  +                
Sbjct: 179 TEFIDMKALMGDNSDNYPGVEGIGPKTASNLIQKYGSVENLYDHI--------------- 223

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  + S++                         RLI                   D D 
Sbjct: 224 -DDLKKSKR-----------------------KERLI------------------RDKDK 241

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           A +   +  I+      + +E  I +D   +      L D   ++   +   +L LE   
Sbjct: 242 AFLAKKLAAIDRESPVTVTLEDTIKKDPNYEK-----LRDLYERLGFRKFLAELNLETAG 296

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + S    + ++Y  +  T+D    +  L+     SF +     +   +     ++   D+
Sbjct: 297 EDSG---DTENYDYVELTEDNVAELDDLKENE-ISFYLEMLGDNYHLAPFEGFSLKVGDK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                           V+ S+D              LK   EN    K   ++K   + L
Sbjct: 353 ----------------VYVSKDIALLQE------KPLKDILENRKIQKDVFDLKRMTVGL 390

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSS-IPID 531
           HR  + + G   D++L SY++++ ++S+D+  IA  +  Y+ K   E+    K   IP D
Sbjct: 391 HRLDVIVEGLNYDMLLASYLVNNEKNSNDLGEIAHLYDEYSIKTDLEVYGKGKKQAIPED 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K    +  +H      VI +L   L  +L   +   ++E ++ P   V+++MEI GI+++
Sbjct: 451 K----EFFKHLAAKVCVIEKLKPELLKQLKEHEQDDLFETIEIPTARVLAKMEINGIKVE 506

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L ++  E +  L  LE+ IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG   
Sbjct: 507 ASTLIELQNEFAVKLKELEDKIYKQAGEEFNLNSPKQLGHILFEKLNLPVLKKTKTGY-- 564

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++       +PI+  IL++RQ++KI+STY   L + I +R  RVHT Y    T TG
Sbjct: 565 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVI-QRDGRVHTRYLQTLTATG 623

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQ+ELR+LAH++    + + 
Sbjct: 624 RLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEA 683

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A  IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R  A 
Sbjct: 684 FKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAK 743

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I +Y++K     R+ GY ETI  RR +  +I++ K ++R+  ER AIN
Sbjct: 744 EFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTAIN 803

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP++E+ T  +I+   M+
Sbjct: 804 SPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEIMQ 863

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 864 SA----VKLDVPLIADSGWGHNWYDA 885


>gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1]
          Length = 912

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/979 (27%), Positives = 451/979 (46%), Gaps = 98/979 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G   NAI GF +ML   L++ +     +H 
Sbjct: 20  DRPRLLLLDGHSLAYRAFFALPAENFNTTTGQTTNAIYGFTSMLVNTLRDEQ----PTHL 75

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R+E + +YKANR K P+    Q+ L+     A  I    + GFEADDII
Sbjct: 76  AVAFDVSRKTWRSEQFTEYKANRSKAPDEFKGQVELIGEMLDAMSITRFAVDGFEADDII 135

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE EGF V I++ D+D  QLVS    +    K      +     V +K+G+ P 
Sbjct: 136 ATLATQAEAEGFEVLIVTGDRDSFQLVSDHVTVLYPTKGVSELTRFTPAKVEEKYGLTPR 195

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPG+G KTAA  + ++G+   ++   + +K  K  + + E+ 
Sbjct: 196 QYPDFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVAEVKG-KVGDKLREHL 254

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E    S KL    T++   + L        +G               + R+   YD  A 
Sbjct: 255 E----SVKLNRRLTELVRDVELPA----GPDG---------------LKRIP--YDRQAL 289

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           ++    L+      +   +  +         +    +      I S              
Sbjct: 290 SVIMDALEFRHQNFRDRVLAVDPGAAEEEPAAAAPGVEVDGVVIGSG------------- 336

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                             ++  W+++          + T  + +     IA+A ++    
Sbjct: 337 ------------------ELAPWLERHGAGPLGLATVDTWALGSGSVSQIALAAASGPA- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     F   +V    +                 +  +    K+ H+ K    V  
Sbjct: 378 --------VCFDPSAVDEPDE------------RAFADWIADPERPKVMHDAKRVMRVFD 417

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G ++ G   D  L +Y++  GR S  + +++ ++L         +    +     +D 
Sbjct: 418 EQGWAVAGAAMDTALAAYLVKPGRRSFALDALSVEYLGRELSPAAAAESGQLAFG--ADE 475

Query: 537 QVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           Q ++ A+   +  IL L      +L     + +   ++ P+  ++++ME  GI  D+D L
Sbjct: 476 QAEQDALMIQARTILDLGEAFGRRLAEVGAVELLRDVELPISALLARMEKAGIAADRDWL 535

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++    +  +    +  +D  G +FNL SPKQL ++ F +L  P   K KTG       
Sbjct: 536 DRMDQRFAGAVQQAVKEAHDAVGHEFNLGSPKQLQEVFFGELGLPKTKKIKTGYTTDADA 595

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   D+ +   +L  R+ ++++ST  + L   I     R+HT ++     TGRL+S
Sbjct: 596 LAWLATQTDHELPVIMLRHREQARLRST-VEGLIKAIAPGG-RIHTTFNQTVAATGRLSS 653

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQN+ ++T+ G+ IRR F+     + L++ADYSQIELR++AH+++   L + F + 
Sbjct: 654 TDPNLQNVHVRTEEGRAIRRGFVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSG 713

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VA+++FGV   +V P+MRR  K +++ + YG+S F L+ QL I   EA   +  
Sbjct: 714 EDLHTTVASQVFGVAKSEVDPEMRRKIKAMSYGLAYGLSAFGLSQQLGITPDEARKLMDT 773

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           +F RF G+ +Y+++  +  R  GY ET+ GRR +  ++NS     R + ER A+NAPIQG
Sbjct: 774 FFERFGGVRDYLQRVVDEARATGYTETMLGRRRYLPDLNSDNRQRREMAERMALNAPIQG 833

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ V ++L   KL+++MLLQ+HDE+V EV   E      ++   M  A   
Sbjct: 834 TAADIVKIAMLRVDEALTKEKLSSRMLLQVHDEIVVEVAPGEREQVEALVRREMAGA--- 890

Query: 955 KINLRVPLKVNIKVSNNWQ 973
             +LR PL V++    +W+
Sbjct: 891 -FHLRAPLDVSVGAGTDWE 908


>gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
 gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
          Length = 950

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/988 (28%), Positives = 474/988 (47%), Gaps = 70/988 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++     +    H
Sbjct: 11  TSRGTLLVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDTEHPD----H 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFRN + P YK  R   PE LL QLPL++    A G+  IE  G+E DD+
Sbjct: 67  LAVAFDVKGGTFRNMMLPQYKGTRDAAPEDLLSQLPLIQRMLSALGVTYIEQPGYEGDDV 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   + +K G+   ++S D+D  QL++    +          + +  + V++K+ + P
Sbjct: 127 IGTLATMGDKAGYRTLVLSGDRDAFQLINDNITVLYPGHHFKDLKHMTSDAVVEKYHVTP 186

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+   L AL G++ DNIPG+PG+G   AA  + +YG L+ I+ +A  I  KK  E + E 
Sbjct: 187 EQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDQIIEHADEITGKK-GEALREN 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCD 295
            E  +L+R +  L  D+ + + L+ L     +  RL      LEF  +  NRV  T++  
Sbjct: 246 IEQVKLNRSVNALVRDLELDVTLDDLTFGTVDTARLNDLFSKLEFGIRTRNRVLKTFNAG 305

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                            G+ ++ E +R    +    +   +  + +++   P    L   
Sbjct: 306 TTTA-------------GVTVQPESNRVVLPEVMTITHGDELRTWVDANMPPADEHLHGD 352

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +   I+  S   I NT                                 A+  S + 
Sbjct: 353 DEDANPAIDAGS--LIGNTMTCTN----------------------------AVNHSWVL 382

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           Q +  +         L +  +        +   I + L+   +  H   + H  K  + +
Sbjct: 383 QAEGVAKPGNASMASLMLMVNGKGAQIEHVDDSIANELQHMLDGYHRSMVVHGYKEQQHL 442

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-ILKSRKSSIPIDKI 533
           L   GI++     D  L  Y++     +  +   A  +L    +E   ++ + ++ +D +
Sbjct: 443 LESVGITLPTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLDLDDM 502

Query: 534 S--DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
               +   +    ++ ++  L  +L   L       + + ++ P+  V+  ME  G Q+D
Sbjct: 503 DGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAGAQVD 562

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L ++  + + +    +E  ++ +GE+ NL SPKQL  ILF  +      KTK+G + 
Sbjct: 563 MIRLTEMRDQFAADARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKSGSYT 622

Query: 652 TTAQDLEQINCG------DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           T A  L+ +          N  +  +L  R+ +K+K     +L +  N R  R+HT +  
Sbjct: 623 TNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLK-QIVQTLIDATNPRDGRIHTTFEQ 681

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKI 764
               TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A ++  
Sbjct: 682 TVAATGRLSSVDPNLQNIPNRNAAGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGD 741

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F +  D H+ VA+ ++G+ +E+++   R H K +++ + YG+S + LA QL+I 
Sbjct: 742 EALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGLSTYGLAQQLKIS 801

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA     +YF  F  +HEY+E   +  R+ GY ETI+GRR ++  + SP  ++R+  E
Sbjct: 802 PKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAVRDAAE 861

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAA+NAPIQGSAADI + AMI    SL D  L ++++LQIHDELV E+   E   A+ ++
Sbjct: 862 RAALNAPIQGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQATALV 921

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++ME A    + + VPL  +  + ++W
Sbjct: 922 RNAMEHA----VTMAVPLDASTGIGSDW 945


>gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 884

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/974 (31%), Positives = 486/974 (49%), Gaps = 109/974 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +  + +    + AV 
Sbjct: 12  KKLMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEIKPD----YIAVA 66

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +G+E DDI+ + 
Sbjct: 67  FDKGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGYEGDDILGSL 126

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           +        AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++
Sbjct: 127 SKKFGSSDLAVQIITGDRDNLQLVTDYSHVFLTKKGISDMLEVTLDNMTELYGYGPDKVI 186

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GDS DNIPG+PG+G KTA  L+ EYG+LE++  N   I  KK +E ++E  E A
Sbjct: 187 EMKALMGDSSDNIPGVPGVGEKTALKLINEYGDLESVYENIDNISGKKLKERLVENKELA 246

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                                       ++R   T   D     
Sbjct: 247 -------------------------------------------FLSRQLATIKTD----- 258

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              +D++ T ++ +      +     +T  F+ L+ + + +   +         L  +++
Sbjct: 259 ---MDLSYTLDQFVQNFHLGEVKPMFETLGFTKLTPRLASVMGSEGGDAEDFGGLFSMAE 315

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                    KI +  D     +      +    IITD    F +    I  + ++  +  
Sbjct: 316 EI-------KIEDLLDASALTEDFYKNKTIGVHIITDGKAPFRT----ITSAFINNGESI 364

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                +    L    +   T   T +KE++  L             H+      +     
Sbjct: 365 IKLDGSHNDKLLNALNGAKTVVTTQSKELMEAL------------CHDEPAQIRLYEN-- 410

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
             +    D+ LM+Y+LD  R+++    + +++              S+P   I+   V  
Sbjct: 411 -GVARIHDVSLMAYLLDPTRTNYGYLYLTERF--------------SVP--SIATGSVDV 453

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             +     +L +       L  E L  +Y  ++ P+I  +  ME  GI ID   L++ + 
Sbjct: 454 ECVSMVKALLAMDDAAVKALQDESLWDLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTI 513

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +    L ++++ IY+L+GE FN++SPKQLG ILF K+  P   KTKTG   +T  ++  +
Sbjct: 514 KFKAELEAVQQEIYELAGETFNINSPKQLGIILFEKMNLPVIKKTKTGY--STDAEVLDM 571

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++PI++ IL +R ++K+ STY + L   IN  T R+HT ++   T TGRL+S +PNL
Sbjct: 572 LRHESPIVEKILAYRSVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSSDPNL 631

Query: 721 QNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F        L+SADYSQIELRILAH++    L + F +  DIHR
Sbjct: 632 QNIPVRTEKGREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIKAFNDGKDIHR 691

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G + ++V+ + R HAK +NF IIYGIS F L+  L I R EA +YI+ YF R+
Sbjct: 692 FTAAEVLGKSQDEVTSEERSHAKAVNFGIIYGISDFGLSRDLGITRQEAKNYIELYFSRY 751

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY++       + G V T+FGR     +INS   + R+  ER A+N PIQG+AADI
Sbjct: 752 PKVKEYMDNMVIEAHETGKVRTMFGRMRELPDINSRNFNRRSFAERTAMNTPIQGTAADI 811

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM  V   LE+    +++LLQ+HDELV EV  EE+     ++  +ME      + L 
Sbjct: 812 IKLAMNKVESILEEKAFKSRLLLQVHDELVLEVVNEELDAIQTLLKETMES----IVELH 867

Query: 960 VPLKVNIKVSNNWQ 973
           VPL V++  + NW 
Sbjct: 868 VPLIVDVHNAENWA 881


>gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
 gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
          Length = 908

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/979 (32%), Positives = 500/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++  E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMGNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAITLIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                     + S F                Q+     L  ++
Sbjct: 289 EKENAD---------------------QKSLFK---------------QEPTTNNLDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------CYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A      
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039]
          Length = 881

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/990 (31%), Positives = 488/990 (49%), Gaps = 125/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++Q  +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ 
Sbjct: 116 DDIIGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I               
Sbjct: 176 GLTPKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY-------------- 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E+ +  + S+                  + E+    +  +FL          ++AT  
Sbjct: 222 --EHIDEMKQSK------------------MKENLINDKEQAFLSK--------KLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV + I++ + +G  ++  +      K   F+    + + +  E     +  
Sbjct: 253 ----NTSAPVDVSIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILF 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E + +  +     D                        +  +     +    + + +A  
Sbjct: 306 EVIHEFKEEMFTTD-----------------------MALYVEMMGDNYHTEEIVGVAWG 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T         K   +  DLSV  ++                  +  +   LK  ++ K  
Sbjct: 343 TE--------KKIYVTNDLSVFENR--------------AFHSWITDPTRLKKVYDAKRT 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +        K  K  
Sbjct: 381 YVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKG 440

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P ++        H       I  L   L  +L  +    ++ +++ P+  ++++MEI+G
Sbjct: 441 LPEEE---ELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISG 497

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 498 IKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 557

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    
Sbjct: 558 GY--STAVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGK-VHTRYVQTL 614

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ D G+KIR+AF+       + S+DYSQIELR+LAHI+    
Sbjct: 615 TQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEH 674

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 675 LKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISR 734

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +INS   +IR+  ER
Sbjct: 735 KAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLPDINSRNYNIRSFAER 794

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVPE+E+ +  +++ 
Sbjct: 795 TAINTPIQGSAADILKIAMIELDKRLKEAGLQATMLLQVHDELVFEVPEKELESLDKLVK 854

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME+A    ++L VPL  +      W E 
Sbjct: 855 EVMEQA----VSLHVPLITDSSWGKTWYEA 880


>gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026]
          Length = 886

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/985 (31%), Positives = 504/985 (51%), Gaps = 115/985 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA           DGL  NAI  F NML  ++    K++  ++
Sbjct: 3   QKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR E+Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + + E  G+ V I++ D+DL QL S  T +  T       E    +H+ +  G+ P
Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPDHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++E +                   
Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSIEELYE----------------- 221

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                      +++    +L   L   +    + +   T D ++
Sbjct: 222 --------------------------HVDEMKKSKLKENLINDKDKAFLAKKLATIDRNS 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV + +  T+ +   IE   +    +   +F +    T   +SEQ  +K       
Sbjct: 256 ----PVEVTLADTKLQEPNIEDLRNLYERLGFKKFLAELGSTGTTSSEQEIEK------- 304

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  +  TK+    + K+      +F +     +   +     ++   ++
Sbjct: 305 -----------YEYLELTKENIVELDKISE-KEVTFYLAMLGDNYHLAPIEGFSLKVGNK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              +   V                            L K  E++   K   +IK   + L
Sbjct: 353 IYVSKDPVLLQENP----------------------LHKMLEDKTIKKNVFDIKRTYVGL 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDK 532
           HR  +   G + D++L SY++++  +S+D+  +A  +  Y+ K   E+    K       
Sbjct: 391 HRLDLKAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDDYSVKTDLEVYGKGKKQ---AV 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            +D++  EH      VI +L   L  KL   +   +YE ++ P+  V+++MEITGI+++ 
Sbjct: 448 PNDNEFFEHLAAKVAVIEKLKTQLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L Q+  + +  L  LE  IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG + T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPKQLGHILFEKLGLPPIKKTKTG-YST 566

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LEQ+    +PI+  IL++RQ++KI++TY   L + I     R+HT Y    T TGR
Sbjct: 567 SVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKGLLDCIQPDG-RIHTRYLQTLTTTGR 624

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIP KT+ G++IR+AF+       + S DYSQ+ELR+LAH++    + + F
Sbjct: 625 LSSVDPNLQNIPTKTEEGKQIRKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEAF 684

Query: 772 ENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           ++  DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R +A  
Sbjct: 685 KSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKT 744

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+ YF ++P I  Y+++     R+NGY ETI  RR +  +I+S   ++R+  ER AIN+
Sbjct: 745 FIENYFEQYPQIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINS 804

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI++ K L++  L TKM+LQ+HDEL+F+VP++E+ T  +I+   M+ 
Sbjct: 805 PIQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELNTIKKIVPEVMQS 864

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPL  +    +NW + 
Sbjct: 865 A----VKLDVPLIADSNWGHNWYDA 885


>gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 945

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/980 (28%), Positives = 472/980 (48%), Gaps = 104/980 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + +  L L+DG S  +RAF+A P  +     G   NA+ GF +ML  LL+  +     SH
Sbjct: 58  KTDQTLMLIDGHSMAFRAFFALPAENFSTTGGQNTNAVYGFLSMLATLLKEEQ----PSH 113

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR +++PDYKA R   P     Q+ +++   +  GI  IE + +EADDI
Sbjct: 114 IAVAFDVGRKTFRTDLFPDYKAQREATPPEFKGQVEILKDVLKTLGITTIEKEDYEADDI 173

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    A+  G+   I++ D+D  QLV+ TT +   ++      +   E V +K+G+ P
Sbjct: 174 IATLAVAAKPLGYDTLIVTGDRDSFQLVNDTTTVLYPMRGVSVLHRFTPEAVEEKYGLTP 233

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+P IPG+G KTA   + EYG+L+N+L +A  IK K         
Sbjct: 234 SQYPDFAALRGDPSDNLPNIPGVGEKTATKWIVEYGSLDNLLEHADEIKGKAG------- 286

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                                SF + L+  ++  ++        
Sbjct: 287 ------------------------------------NSFRERLDQVRMNRKLTEMIKDME 310

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             + P  L++ T +   +A E +     T         + +   + + +T  ++ +E ++
Sbjct: 311 LPVGPDDLEMGTADVAEVATEFDALEFGT---------NLRERVLAAVKTDGEIPVEAVE 361

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +  ++     + ++T+  +     +  +G+ +      T DA        +I+ +D 
Sbjct: 362 NRDEVGVDTLPLDEWLSTRRGRPLAVAVTGVGTPA------TGDAH-------SIAIVDT 408

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                                          E    L  +  +E   K+ H  K    +L
Sbjct: 409 DRRAVVADLADITP-----------------EAEKALAGWLADEASPKLLHGAKAVFHML 451

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G  +RG   D  + +Y+L  G+ ++++A + Q+ L         +  + + +    D
Sbjct: 452 AGRGFELRGIEHDTAIAAYLLRPGQRTYELADVYQRHLQRQLNP-SNNGSNQLTLLDAGD 510

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           SQV    ++ +  IL+L   L  +L       +Y  L+ P++ ++++ME TGI +D   L
Sbjct: 511 SQV---LVDEAVAILELAGELTSQLQEINGFELYRDLEIPLLSILARMEATGIAVDVATL 567

Query: 596 KQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           ++        +   EE   +L+G+   NLSSPKQL  +LF     P   KTKTG     A
Sbjct: 568 EEQLETFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAA 627

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +         +P + ++L  RQ  K+K+T  + L   +     R+HT ++     TGRL+
Sbjct: 628 EIEALAAKNPHPFLDHLLAHRQYQKMKTTL-EGLIRSVGSDG-RIHTTFNQTVASTGRLS 685

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIP++T+ G+KIR  F+       L++ADYSQIE+R++AH+++   L + +  
Sbjct: 686 STDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYRE 745

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  V +++F V I+ V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++
Sbjct: 746 GEDLHNYVGSKVFDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKTIME 805

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+  Y+ +     R++GY ET+FGRR +  E+NS     R   ERAA+NAPIQ
Sbjct: 806 SYFERFGGVQRYLAEVVEQARKSGYTETLFGRRRYLPELNSDNRVARENAERAALNAPIQ 865

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI V + L    + +++LLQ+HDELV E+   E+     I+   M+ A  
Sbjct: 866 GTAADIIKVAMIRVDRELRATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNA-- 923

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             I LRVPL+V+     +W 
Sbjct: 924 --ITLRVPLEVSAGSGRDWD 941


>gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 889

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/977 (28%), Positives = 463/977 (47%), Gaps = 102/977 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           + L+DG S  YRAF+A P  +     G P NAI GF +ML   L++       +HFAV F
Sbjct: 1   MMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASMLANTLRDEE----PTHFAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R+E + +YKANR K P+    Q+ L+     A       ++GFEADDIIAT  
Sbjct: 57  DVSRKTWRSEEFTEYKANRSKTPDEFKGQVQLIGELLDAMHAERFAVEGFEADDIIATLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE EGF V I++ D+D  QLVS  T +    K      +   E V++K+G+ P +   
Sbjct: 117 TRAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVVEKYGLTPAQYPD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K  K  +N+ ++ E+ +
Sbjct: 177 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKG-KAGQNLRDHLESVK 235

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299
           L+R+L  L  +V +   +  L     +   + + L +LE     L  R+           
Sbjct: 236 LNRRLTELERNVELPRTVADLARTAYDRKAVATLLDSLEIRNPSLRERL----------- 284

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                              +       +E TP       L    
Sbjct: 285 ----------------------------------FAVDPGAEEAEATPIAADGVELDG-- 308

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                      ++ T ++  W+      G+ +  + T       +  +  A S  +    
Sbjct: 309 ----------TVLGTGELAPWLA---EHGAGTLGVAT-----VDAWALG-AGSVAEVALA 349

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +      F    +  + ++                +  +    K+ H+ K    VL  +
Sbjct: 350 AADGSAAWFDPAQLDETDET------------AFAAWLADADRPKVFHDAKGAMRVLAEH 397

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G S+ G   D  L +Y++  GR S  + +++ ++L    +E+  +  +   +   +D   
Sbjct: 398 GWSVDGVRMDTALAAYLVKPGRRSFALDALSLEYLH---RELAPAAAADGQLAFGADEAA 454

Query: 539 -QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E  +  +  IL L  +   +L       +   ++ P   ++++ME  GI  D+  L+ 
Sbjct: 455 EAEMLMIQARSILDLGEVFEGRLEEVGAADLLRDMELPTSALLARMERHGIAADRAHLEA 514

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +    +  +    +  +  +G +FNL SPKQL ++LF +L  P   KTKTG         
Sbjct: 515 MEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALA 574

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                 DN +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+S +
Sbjct: 575 WLAAQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLSSTD 632

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  D
Sbjct: 633 PNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTSGED 692

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H   A+++FGV+   V  +MRR  K +++ + YG+S F L+ QL I  +EA   +  YF
Sbjct: 693 LHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARALMDAYF 752

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RF G+ +Y+ +  +  R  GY  T+FGRR +  ++NS     R   ER A+NAPIQG+A
Sbjct: 753 ERFGGVRDYLRRAVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTA 812

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM++V ++L +  L ++MLLQ+HDE+V E+   E     +I+   M  A    +
Sbjct: 813 ADIVKIAMLNVDRALREADLKSRMLLQVHDEIVLEIAPGERAATEEIVRREMSGA----V 868

Query: 957 NLRVPLKVNIKVSNNWQ 973
            LR PL V++ V  +W+
Sbjct: 869 QLRAPLDVSVGVGPDWE 885


>gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 897

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/980 (31%), Positives = 481/980 (49%), Gaps = 92/980 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DGS FI+RA++A P LS    G+P NA+ GF NML K L+    E   +H A++
Sbjct: 2   PTLTLIDGSGFIFRAYHAIPHLSTTK-GIPTNAVYGFTNMLLKALR----EHAPTHVALV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    +FR++I P+YKANRP+ P+ L  Q PLVR   +A  +P IE  G+EADDIIAT 
Sbjct: 57  FDAGRRSFRHDIDPEYKANRPEAPDDLAAQFPLVRDVARALNVPVIEEAGYEADDIIATL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-----KEEKIDIEHVIKKWGIPPEKM 179
              A  EG+ V +++ DKD  QLV     LYD +     +        V KK G+ PE++
Sbjct: 117 ASHARAEGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           +  Q++ GD IDN+PGIPG+G  TAA L++ +G  E +L   + I               
Sbjct: 177 IEYQSILGDKIDNVPGIPGVGEVTAAALVRHFGTTEAMLARPAEIP-------------- 222

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +SR                     +    ++++  + +   + +  VA   D D    
Sbjct: 223 AAVSR-------------------GGEKLRDKVVANAERIRTNRRL--VALRRDLDLPFA 261

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                     + +  A+ +E++    +K                 +TP+ +        +
Sbjct: 262 PEAFGRRPPDQERARALFSELEFSRLVKEL------PPPPPTARAETPETIDGRAALDAA 315

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              +                        G A    +        +  + +A +       
Sbjct: 316 VAALV--------------------RAGGPAGLVPVLGDGPPRSAPLVGLAFA------- 348

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ L                ++   L+   E        H++K     L R 
Sbjct: 349 --GAGRAFYLPLGHRYL--GAPAPLPAADVREGLRPLVE-AALPLHAHDLKSAAHALARL 403

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKSRKSSIPIDKISDS 536
           G++  G  ED  LMS +L   R  H +  +A++  S    R     +++ +  ++ +   
Sbjct: 404 GLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRSPADGAKRGAPGLEGLEVE 463

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +V   A   +  +  L   L   L  E+L  +Y  +++P++ V+ +ME  GI +D+  ++
Sbjct: 464 RVAAWAGACAAALPDLAAKLAEALETERLGALYREVERPLVPVLVEMERAGILVDRGAME 523

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +SAE  K +  LE  I+  +G  FN++S ++L  +LF +L+ P   + KTG   +T QD
Sbjct: 524 GMSAEFGKAMQDLEARIHAAAGHPFNVASTRELAQVLFVELELPVVKRLKTG--PSTDQD 581

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +     + + + +LE R LSK+K TY D+LP  ++    R+HT +  A   TGRL+S 
Sbjct: 582 VLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAATGRLSSS 641

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T+L ++IR+AF++P   +L+SADYSQIELRILAH +    L Q F +  D
Sbjct: 642 DPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRED 701

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H   AAE FGV  E+V+P  RR AK +NF I YG+S F L+ +L +P SEA   I RYF
Sbjct: 702 VHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYF 761

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+ G+  YIE      R  G   T+FGR     EI +   ++RN  ER AIN PIQG+A
Sbjct: 762 TRYAGVRRYIEWAVEEARAKGESRTLFGRARAMPEIAARNPALRNAAERTAINTPIQGTA 821

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AMI VH +L   +   ++LLQ+HDELV EVPE E+     ++   ME A     
Sbjct: 822 ADVVKIAMIRVHAALAQERREARLLLQVHDELVLEVPERELEPVEALVRREMEGAA---- 877

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L+VPL+V +     W E +
Sbjct: 878 RLKVPLEVQVGHGQTWAEGH 897


>gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68]
 gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68]
 gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
          Length = 881

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/990 (31%), Positives = 488/990 (49%), Gaps = 125/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++Q  +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ 
Sbjct: 116 DDIIGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I               
Sbjct: 176 GLTPKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY-------------- 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E+ +  + S+                  + E+    +  +FL          ++AT  
Sbjct: 222 --EHIDEMKQSK------------------MKENLINDKEQAFLSK--------KLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV + I++ + +G  ++  +      K   F+    + + +  E     +  
Sbjct: 253 ----NTSAPVDVSIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILF 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E + +  +     D                        +  +     +    + + +A  
Sbjct: 306 EVVHEFKEEMFTTD-----------------------MALYVEMMGDNYHTEEIVGVAWG 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T         K   +  DLSV  ++                  +  +   LK  ++ K  
Sbjct: 343 TE--------KKIYVTNDLSVFENR--------------AFHSWITDPTRLKKVYDAKRT 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +        K  K  
Sbjct: 381 YVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKG 440

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P ++        H       I  L   L  +L  +    ++ +++ P+  ++++MEI+G
Sbjct: 441 LPEEE---ELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISG 497

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 498 IKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 557

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    
Sbjct: 558 GY--STAVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGK-VHTRYVQTL 614

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ D G+KIR+AF+       + S+DYSQIELR+LAHI+    
Sbjct: 615 TQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEH 674

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 675 LKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISR 734

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +INS   +IR+  ER
Sbjct: 735 KAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAER 794

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVPE+E+ +  +++ 
Sbjct: 795 TAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVK 854

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME+A    ++L VPL  +      W E 
Sbjct: 855 EVMEQA----VSLHVPLITDSSWGKTWYEA 880


>gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603]
 gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603]
          Length = 838

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/942 (30%), Positives = 472/942 (50%), Gaps = 116/942 (12%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML ++L+  +     +H  V FD    TFR++ Y DYK  R K P  L  Q P +R    
Sbjct: 2   MLMRILEEEK----PTHMLVAFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLD 57

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--- 160
           AF +P  E++ +EADDI+ T    A ++GF V +IS DKDL+QLVS  T +    K    
Sbjct: 58  AFNVPRYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITE 117

Query: 161 -EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            ++   E + +K+ + P++++ ++ L GD  DNIPG+PG+G KTA  LL ++  +E +  
Sbjct: 118 VDEYTKEALFEKYSLSPKQIIDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYE 177

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
           N  ++  KK +E +                                + N  +        
Sbjct: 178 NLDQVSGKKLKEKL--------------------------------EANKEQ-------- 197

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
               L+++   T   DA    P+ + ++  E KG      I      +   F+SL ++  
Sbjct: 198 ---ALMSKELATIITDA----PITVHVDDMEYKGYEPSDLIPM---FENLGFTSLLNKLG 247

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
               E  P +L             ++ ++  +   +  ++ +Q+      ++  +     
Sbjct: 248 VTPEETAPAEL-------------DDITFDIV--EEVTEEMLQQ-----DSALIVEVQED 287

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           +   +      I   +            FI   V    D+              K++  N
Sbjct: 288 NYHKADIQGFGIQNENG---------CYFIPADVALKSDA-------------FKEWLAN 325

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY--- 515
               K   + K   + L   G+ ++G + D+++ +Y+LD   +  D  ++A+   ++   
Sbjct: 326 GEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRAVAKMKETHAVK 385

Query: 516 -TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              +   K  K ++P  ++    V EH     +V+  +  +   +L   +   ++  L+ 
Sbjct: 386 SDEEVYGKGAKRAVPEQEV----VAEHVARKVHVLYDVKQIFEEELEKNEQYELFTELEL 441

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+  V++ ME+ G+ +D + L+ +  E++  L  +E+ IY+L+G +FN++SPKQLG ILF
Sbjct: 442 PLARVLADMEVKGVTVDTERLRNMGEELAGRLKEMEQEIYELAGTEFNINSPKQLGVILF 501

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
             L  P   KTKTG   +T+ D+       + II  IL +RQL K+ STY + L   ++ 
Sbjct: 502 ENLNLPVLKKTKTGY--STSADVLDKLMDHHAIIPKILHYRQLGKLNSTYIEGLLKVVHD 559

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQI 753
            + ++HT ++   T TGRL+S EPNLQNIPI+ + G+KIR+AFI       + +ADYSQI
Sbjct: 560 DSSKIHTRFNQVLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFIPSEEGWIMYAADYSQI 619

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR+LAHIAK   L + F++ +DIH   A ++FGV  ++V+  MRR AK +NF I+YGIS
Sbjct: 620 ELRVLAHIAKDEGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGIS 679

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A ++I+RY   FPG+ EY+       +Q GYV T+  RR +  EI 
Sbjct: 680 DYGLSQNLGITRKAAGEFIERYLESFPGVQEYMADIVKDAKQKGYVSTLLNRRRYIPEIT 739

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  L  ++LLQ+HDEL+FE P
Sbjct: 740 SRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAP 799

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +EE+    +++   ME A    I L VPLKV+      W + 
Sbjct: 800 KEEVEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTWYDA 837


>gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
 gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
          Length = 875

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/984 (32%), Positives = 498/984 (50%), Gaps = 119/984 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+    ++E    +
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM----KEEINPDY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD+
Sbjct: 55  IVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ DKD +QL +    +  T K     E  D   +I+++G+ P
Sbjct: 115 IGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L N   IK K         
Sbjct: 175 KEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGK--------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L       + ++   T  C+ 
Sbjct: 226 ----------------------------------KLKENLHEYREQAIFSKKLATIICN- 250

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V +D++  + K              +  +F SL ++ SK + E+           
Sbjct: 251 -----VPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVSKSDEEE----------- 294

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     SY  IV+ ++ +     +            D    F  + I +   +  +
Sbjct: 295 ----TVEEEVSYKNIVSLEEFKDLKNNIIKYK------ENDLYLYFELEDIVLFSKSRVK 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +FK E   ID            N   ++ +   ++ FE++   KI +N K  + +L
Sbjct: 345 TLYANFKDEVYRIDF-------EMLLNNTKEQFIEVCREMFESKEIKKITYNAKNPRTIL 397

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            + GI   G   DI L +Y++D  R  ++I+S+A ++L        E LK          
Sbjct: 398 RKLGIDFNGIKFDINLAAYLIDPVRKEYEISSLASEYLFKNINREDEFLK---------- 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                     I+  N++  L+ +L  K+  + +  +  ++++P+ + +S ME  G ++D+
Sbjct: 448 ----------IKEVNIMPNLYKVLEEKIKDQDMEELLYKVEQPLTETLSAMETEGFKVDK 497

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D+L Q+  +    + S +  IY +S EKFN++SPKQLG ILF KL  P   KTKTG + T
Sbjct: 498 DILLQLEKKFKGEIESTQLEIYSMSEEKFNINSPKQLGKILFEKLDLPVIKKTKTG-YST 556

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ L+++    +PII  I  +RQL+KI STY + L   I++  + +H+ ++   T TGR
Sbjct: 557 NAEVLDKLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDEDGK-IHSNFNQTVTATGR 614

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIPIK ++G++IR+ FI       ++SADYSQIELR+LAHI+    +   F
Sbjct: 615 LSSTEPNLQNIPIKYEMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAF 674

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   A+E+F V IE+V+P MR +AK +NF I+YGI  F L+  L I R EA  Y
Sbjct: 675 NEHDDIHTKTASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQY 734

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y  R+P +  Y+E       + GYV TI  RR +  E+ S    ++   ER A+N+P
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSP 794

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM++VH+ L++    + ++LQ+HDEL+  V ++E+     ++   ME+ 
Sbjct: 795 IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELERIKALVKKEMEQV 854

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
               + L+V L V+I + NNW E 
Sbjct: 855 ----LELKVGLDVDINIGNNWYEA 874


>gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
 gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
          Length = 902

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/981 (28%), Positives = 452/981 (46%), Gaps = 102/981 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H  V
Sbjct: 6   PRLLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQ----PTHIVV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR E Y +YKA R + P     Q+ LV+    A  IP +E +G+EADD+IAT
Sbjct: 62  AFDVSRHSFRTEKYAEYKAGRSETPTDFKGQVSLVKEVLAALRIPVVEKEGYEADDVIAT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKM 179
               A  +G +V I + D+D  QLV  +  +    K      ++D   V  K+G+ P++ 
Sbjct: 122 LACQARDQGMSVLITTGDRDAFQLVGDSVTVLYPRKGVSDLARMDPAAVETKYGVSPQRY 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DN+PG+PG+G KTAA  +  YG +E ++  A  IK  K  E++ E    
Sbjct: 182 RDLAALVGETSDNLPGVPGVGPKTAAKWINLYGGVEGVVARADEIKG-KAGESLRE---- 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                +L  +  +  I   +  L                L                    
Sbjct: 237 -----RLADVIRNYEINCLVCDL---------------ELPIR----------------- 259

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                     E+   A            T +F  L D+             +LE ++  +
Sbjct: 260 ---------PEDARWAGWDREAVHQVFDTLEFRILRDRL----------YQYLEAVEPEA 300

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGS---ASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +   +  +  ++     +  W+      G+    + K      D                
Sbjct: 301 EAGFDLAA-ERLTEPGRVTAWLAAHAPAGTQVGVAVKTPAKPRDPRE------------- 346

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                                       L +     L  +  +    K+ H+ K+ +L  
Sbjct: 347 ---RYEPQLDALALALATGPAAWLDPAELAESDERALAAWLADPARPKVLHDSKHARLAF 403

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI-S 534
              G S+ G   D  L +Y+    + S+D+  +A ++L +    +       +  D +  
Sbjct: 404 AARGWSLAGVARDTELAAYLARPDQRSYDLTDLALRYL-HRELRVDAPETGQLTFDGLGD 462

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           D + +++ +  +   L L   +  +L    E+   +  +++ P+ +V++ M+  GI  D 
Sbjct: 463 DGEAEQNLMLQARATLDLADAIDAELSRDGEQSARLMAQVELPLSEVLAAMQRVGIAADL 522

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L+++ A  +  + S  +  Y   G +FNL SPKQL ++LF +L  P   K KTG    
Sbjct: 523 DYLQELEAHFAGEVKSAAQGAYAAVGREFNLGSPKQLQELLFGELGLPKTKKIKTGYTTD 582

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                        P+++++L  R ++K+K+T  D L   +++   R+HT +      TGR
Sbjct: 583 ADALQWLYAQNPLPVLEHLLRHRDVAKLKTT-VDGLLKSVSEDG-RIHTTFKQTVAATGR 640

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S +PNLQNIPI+T+ G++IRRAF+     + L++ADYSQIE+RI+AH++    L + F
Sbjct: 641 LSSTDPNLQNIPIRTEEGRRIRRAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAF 700

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  D H   A+ +FGV + +V+   RR  K +N+ + YG+S F L+ QL I   EA   
Sbjct: 701 NSGHDFHAATASSVFGVPVAEVTADQRRKIKAMNYGLAYGLSAFGLSQQLGITAEEARGL 760

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF  F G+ +Y+++     R +GY  TI GRR +  ++ S     R++ ER A+NAP
Sbjct: 761 MDNYFAGFGGVRDYLQEVVARARHDGYTSTILGRRRYLPDLVSDNRQRRDMAERMALNAP 820

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM+ V   L +  L ++MLLQ+HDELVFEV   E  T   ++   M +A
Sbjct: 821 IQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGERDTLEALVRSQMGEA 880

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
                 L VPL+V++    +W
Sbjct: 881 ----YPLSVPLEVSVGQGRDW 897


>gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2]
 gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2]
          Length = 942

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/980 (28%), Positives = 462/980 (47%), Gaps = 73/980 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              + +VDG+S ++RAF+A P      DG P NA+ GF NM  K++     +      AV
Sbjct: 27  RRTIAVVDGNSLMHRAFHAIPPSMNAPDGRPTNAVFGFLNMFLKMVDAFHPDG----IAV 82

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD      R E+ P YKA RP + E L  Q P+++   +   IP +E  G+E DDI+ T
Sbjct: 83  AFDKGKPLVRMEMLPSYKAQRPPMDEDLHVQFPMIKQLLEHLSIPILEAAGWEGDDILGT 142

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178
              + E+EG  + +I+ D+D+ QL +    +  T +     + +  + V   + GI P  
Sbjct: 143 LARLGEQEGLDMLLITGDRDMYQLTTEHVKIVGTKRGLSDVQLMTPQVVEDLYHGITPAL 202

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +     L GDS DNIPG+PGIG K A+ L+  YG+L+ ++ +A  +   K  EN+  + +
Sbjct: 203 VPDFYGLKGDSSDNIPGVPGIGPKKASALIMRYGSLDEVIAHAEEVPG-KMGENLRAHID 261

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LSR++  ++TD P+ + +  L     +   +   L  L    + NR       D   
Sbjct: 262 DALLSRRVATIQTDAPVELDMRELSFPAFDAHAVHDALGELGIMAMQNRFLMLIGDDEGP 321

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P        + + +A+   +            ++++    I++ +    +  +  +  
Sbjct: 322 SSP--------DGETLAVADALIARAETAEGIDEAVAELVRAIDAGEWIAAVIDDDKKDG 373

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           + + + +  +         ++ +   E  G+ +            +  +   IS      
Sbjct: 374 ALFGLTHTLWV-----ATSERLIAFEEPEGTEAVSTEHAGGIDLTAGLVRGVIS------ 422

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                             +          ++ S +++    +       +          
Sbjct: 423 ------------------RLLADARLCAPDMKSLIRELVPADSSEPALTDA--------- 455

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
             I +    D  L +Y+LDS RS  D   IA  +LS +                 + +  
Sbjct: 456 LEIDVSRTFDTTLAAYLLDSARSHFDDGYIADTYLSVSLPPARGEAG--------APTDA 507

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
              +   + V       L   L +    +V+  ++ P++ V+  ME TG+ +D   LK +
Sbjct: 508 PVASARAAAVARAAREPLARALELRGAKNVFWDIETPLVPVLVAMERTGMLVDPGCLKDL 567

Query: 599 SAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTTAQ 655
           S  +   +  L   I  L+G+  FN+SSP QL  ILF  +  P+    KT  G + T A+
Sbjct: 568 SEGLESQIDELAVRIRALAGDSDFNISSPMQLSHILFDVMGLPTKGLKKTHRGYYSTNAR 627

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++   DN +++ ILE+R+ +KIKSTY D+L   + ++  RVHT Y+   T TGRL+S
Sbjct: 628 VLDEL-AQDNELVRLILEYREKTKIKSTYLDTL-GPLRRQDGRVHTTYNQTITATGRLSS 685

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             PNLQNIP +++LG  ++ AF +      ++ DYSQIELR+LAH++    L + F    
Sbjct: 686 SNPNLQNIPTRSELGHTVKTAFSAGEGALFLAVDYSQIELRLLAHLSGDEHLIRAFREGE 745

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D H   AA +FGV +++V+P++R  AK +NF I+YG   F L+  L IP SEA + I RY
Sbjct: 746 DFHAETAARVFGVPVDEVTPRLRSRAKAVNFGIVYGQQAFGLSQTLDIPVSEAQEMIDRY 805

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +PG+  ++++T     + GY ET+FGRR    E+    ++ R+  ER A+N P+QGS
Sbjct: 806 FEAYPGVRAFLDRTVAEAAERGYAETMFGRRRPIPELRMKNATQRSFGERTAMNHPMQGS 865

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM  V + L    L  KM+LQ+HDEL FE P  E+   S ++   ME      
Sbjct: 866 AADIIKIAMRRVAERLHGGDLHAKMILQVHDELDFECPIAEVADVSAMVREEMEGV---- 921

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           + L+VPL  ++     W + 
Sbjct: 922 VKLKVPLIADVSTGVTWADA 941


>gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
 gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
          Length = 886

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/986 (30%), Positives = 476/986 (48%), Gaps = 117/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           E  L L+DG+S  ++AF+A           +GL  NAI GF  ML  +L+  +     +H
Sbjct: 3   EKRLLLIDGNSVTFKAFFALYTALGKFTNSEGLHTNAIYGFNTMLETMLKVVQ----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR ++Y +YK  R K    L  Q P V+    A GI   E+  +EADDI
Sbjct: 59  ALVAFDAGKTTFRTKMYDNYKGGRAKTAPELSEQFPYVKELLAARGIQTYELANYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    AE++GF  TI++ D+DL QL    T +  + K     E     +V +K G+ P
Sbjct: 119 IGTLAKQAEEQGFTTTIVTGDRDLTQLADDHTTVSISKKGVSEIEHYTPAYVKEKMGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++ L GD+ DN PG+ G+G K A  L+  YG+++ I  + + I  K         
Sbjct: 179 AQIIDIKGLQGDNSDNYPGVTGVGPKRAVELVSTYGSIDGIYDHLADITAK--------- 229

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L A     L+ +   T   DA
Sbjct: 230 ----------------------------------KLKEHLIADHDQALLAKQLATIKRDA 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV   ++    KG   +  +     +  +QF S               K+ ++   
Sbjct: 256 ----PVEKTVSELVYKGDDYDQLVPFYQKMNFNQFLS---------------KMSIDGEA 296

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +   +   +Y  ++   ++ +     +      F +     +   ++     I     
Sbjct: 297 PTATPGLEEVTY-TVLTADNVTELPSFTDGCE---FYLEMLDDNYHTAELAGFVI----- 347

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                        D    +   +  +        + LK   EN    K   + K   + L
Sbjct: 348 ----------GHNDQWWVSRDTALLQQ-------APLKGLLENADIAKQVFDAKRTFVAL 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPID 531
            R  +++ G + D++L SY+L++  +S+D+  +A +   +          K  K++IP D
Sbjct: 391 QRLAVTLTGVDCDLLLGSYLLNTYDNSNDLGRLAMEHGYHQVATDEDVYGKGAKAAIPDD 450

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D     H    +  I QL   +   L   +   +Y  ++ PM  V+++ME+ GI ++
Sbjct: 451 ---DDVFFSHLARKARAIEQLRPQIFKDLADNEQTDLYRDIELPMAFVLARMEVAGITVE 507

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+ + ++ ++ L  +E+ IY+ +GE+FN+ SPKQLG ILF K+  P   KTKTG   
Sbjct: 508 ASELEAMGSKFTEQLAEIEQTIYNEAGEEFNIGSPKQLGHILFEKMGLPVIKKTKTGY-- 565

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +TA  + +    + PI +NIL++R+++KI+STY + L   I+   Q+VHT Y    T TG
Sbjct: 566 STAVGVLEKLAAEAPIAENILKYRKIAKIQSTYVEGLLKVIHPDDQKVHTRYLQTLTQTG 625

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP++ + G+ IR+AF+   P  ++ S+DYSQIELR+LAH++    + + 
Sbjct: 626 RLSSVDPNLQNIPVRNEEGRAIRKAFVPSHPDWEIFSSDYSQIELRVLAHMSHDKQMQEA 685

Query: 771 FENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F    DIH   A  IF +   E+V+P +RR AK +NF I+YGIS F L+  + I R +A 
Sbjct: 686 FREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVNFGIVYGISDFGLSQNIGISRKQAK 745

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +I  YF  +PG+  Y E+      + GYVETI  RR +  +INS   + R+  ER A+N
Sbjct: 746 AFIDTYFEEYPGVKAYTERMVQQAHELGYVETIAHRRRYLPDINSRNFNQRSFAERTAMN 805

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQGSAADI + AMI + ++L+D  +   MLLQ+HDEL+FE P  EI T ++++   M+
Sbjct: 806 TPIQGSAADIIKIAMIRMEQALKD--MQATMLLQVHDELIFEAPASEIDTLAKLVPSVMD 863

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    I L +PLKV       W + 
Sbjct: 864 SA----IELEIPLKVESHYGPTWYDA 885


>gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116]
 gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116]
          Length = 907

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/979 (33%), Positives = 504/979 (51%), Gaps = 80/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP+YKA R   P  L+PQ+  ++       IP  EI+G+EADD++
Sbjct: 56  IIAFDSEIPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         +++ E+VIKK+GI   ++
Sbjct: 116 ASFAKKAVKNNYLTYIISPDKDLLQTMSEHIKILKIENNSFIEMNNEYVIKKFGINSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E ++   E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGPKGAANLLREFKTLKGIYSNLELI-NKKHQEILIREKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS  LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYDLVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAISLIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E                          +++   SL  Q S I+S           L  L+
Sbjct: 289 E--------------------------ESADQKSLFKQESTISS-----------LDNLN 311

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I   K++   ++KL+     S    T ++D + +K I I+IS  + +  
Sbjct: 312 TIDTENVKYHPITTKKELDSLMEKLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 370

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      F++     IG N K+D  +L  
Sbjct: 371 -------YYIPI------EAKGKVYIEKHYIIQKFNNLFKS-KPKIIGQNYKFDYKILKN 416

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G   +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 417 NGFDPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFAHISLEM 475

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  + L  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 476 ATSYSSEDADITFRLFNVFNEKLKEDGLDKLMYEIEMPFNRVIIEMEENGIYLDKEYLKE 535

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L  +E  I    G  FNL+SPKQ+ ++LF +L      + K     T  + L
Sbjct: 536 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEVLFERLNLKLPDRMKKD--STDIKVL 593

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +  G +  I+N+++ RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 594 ESLK-GQHESIENLIKHRQIAKLKSTYTDNLTELINYKTNRLHTNFIQTKTATGRITSIN 652

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 653 PNLQNIPIKEEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 712

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 713 HAETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 772

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 773 SYPKIKEFITNQINFVRNTGYSETISKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 832

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V    +  K+ +K+LLQ+HDE++ E P EE     +I+ + ME A      
Sbjct: 833 DIMKIAMIKVFNEFKSKKMKSKILLQVHDEMLIESPIEEENETKKILKNMMETA----YT 888

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 889 LSLPLRANIETGKSWGEIH 907


>gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
 gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
          Length = 903

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/984 (30%), Positives = 493/984 (50%), Gaps = 97/984 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG S + RA++  P L+   +GL  NA+ GF N+++K+L   + +    +  V F
Sbjct: 4   KLVLIDGHSILNRAYHGLPDLTN-SEGLHTNAVYGFLNIMFKILDEEKPD----YLTVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+ ++  YK  R  + E L  Q+P+++    A GI  +E +G+EADDI+ T +
Sbjct: 59  DVHAPTFRHRMFDAYKGTRKPMDEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLS 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
             AEK G  V IIS D+DL+QL +    +     +      E  +   VI+K+G+ P++ 
Sbjct: 119 VRAEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIENYNTADVIEKYGVTPKEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PGIG KTA  L+ +Y  +E +  +A  +K  +  +NI+EY E 
Sbjct: 179 IDVKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRASKNIVEYWEQ 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A                                           L+++   T   DA   
Sbjct: 239 A-------------------------------------------LMSKELATIILDAP-- 253

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
               +D   ++ K       +  +      +     +  S+ N E  P+    E    + 
Sbjct: 254 ----VDYEFSDAKLSGGVESLYTEEAFLLCKRYEFKNMLSRFNVE-APKNNAEEHFVVVR 308

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA---IAISTLDQ 416
                   + K  + +     V      G +     +D   +  S+P++   +A+S    
Sbjct: 309 DLKTAESVFEKAKDRE-----VAFAVVPGESLENSESDGQLSLFSEPVSNDYLAVSICFS 363

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           ++D  F             S     +   T E+ S++    +          IK D    
Sbjct: 364 EEDIYFICT------GDEISSSFLDEKLNTLEVKSWISPDLKTNLHRFKSKEIKADD--- 414

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
                  RG + D+M+ +Y+++     +   ++A+ +L      +K+ L        + K
Sbjct: 415 -------RGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKL-DFTQMMK 466

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             + +  + A        +   +L  KL    +L +Y  ++ P++ V+  ME  GI+ D 
Sbjct: 467 EDEKKAVDCACYEVYTAWKSKPVLLQKLKEMNMLTLYRDIELPLVFVLYDMENEGIRADG 526

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             LK+   +++ ++  LE+ IY+ +GE+FN++SPKQLG ILF KL  P+  KTKTG   +
Sbjct: 527 IKLKEYGDKLAVSITELEKKIYEAAGEEFNINSPKQLGVILFEKLGLPNEKKTKTGY--S 584

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+ +    + PI+ +ILE+RQL+K+KSTYAD L  +I    + +HT  +   T TGR
Sbjct: 585 TAADVLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGK-IHTTLNQTITATGR 643

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+ +LG+ IR+ F+       + +DYSQIELR+LA ++    + + F+
Sbjct: 644 LSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFK 703

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N  DIHR  A+ +F    ++V+   RR+AK +NF I+YGIS F L+  L I R EA  YI
Sbjct: 704 NGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYI 763

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF ++P I E++++T    ++NGY +T+FGR     E+NS     R   ER A+N+PI
Sbjct: 764 DSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIPELNSSNFMQRQFGERVAMNSPI 823

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI VH  L D  L ++++LQ+HDEL+ E  E E     +++   M  A 
Sbjct: 824 QGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGA- 882

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
              ++++V ++V  +   +W + +
Sbjct: 883 ---VDMKVSMEVGTECGYDWYDAH 903


>gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
 gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
          Length = 915

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/981 (28%), Positives = 434/981 (44%), Gaps = 98/981 (9%)

Query: 6   HLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  YRAF+A P        G P NA+ GF +ML  LL++       +H AV 
Sbjct: 22  RLLLIDGHSMAYRAFFALPVDKFATSTGQPTNAVFGFTSMLANLLRDEE----PTHVAVA 77

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E Y  YK NR   PE    Q+ +++       +P +E   FEADDI+AT 
Sbjct: 78  FDVGRTTFRTEQYEAYKGNRDATPEPFRGQVAVIQRVLATMHVPVLEKPHFEADDILATL 137

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           +  A  +G  V + + D+D  QLV+    +   VK      ++    V  K+G+PPE+  
Sbjct: 138 SRQARAQGMQVLVCTGDRDAFQLVNDDVTVLYPVKGVSELARMTPAAVEAKYGVPPERYP 197

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL G+S DN+PG+PG+G KTAA  + +Y  LE IL +A  +   K  E++ E     
Sbjct: 198 DLAALVGESSDNLPGVPGVGPKTAAKWITQYDGLEGILAHADAVTG-KAGESLREN---- 252

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                              L+ +   + +NR+    +      +
Sbjct: 253 -----------------------------------LEQVRLNRQLNRLVDDVELPLGPED 277

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +  E   I  E E     T++   F+ L D++ K  +                 
Sbjct: 278 LAARPWDRHELHAILDELEFR---TLRDRLFAMLPDESEKPAAVAAAALDLAVLGAG--- 331

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                          D+  W+            +   +          IA++    +   
Sbjct: 332 ---------------DLGPWLA-ARAGRPLGVDV-RGSGAPAGGDAWGIALADASGQAAA 374

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                    DLS     D            + L  +  +    K+ H  K     L   G
Sbjct: 375 --------FDLSQVDPADE-----------NALAAWLADPAQPKVVHASKEAWHALAGRG 415

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID-KISDSQV 538
           + + G   D  L +Y+    R ++D+  +A  +L                +D ++  +  
Sbjct: 416 MPLAGVTFDTELAAYLCQPDRRAYDLGDLAIGYLRRELGSEDAQVGGQGALDLELDGTDE 475

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
              A   ++ +  L  +L  +L       +   L+ P++DV+++ME TGI  D   L  +
Sbjct: 476 GRRAAVRASAVRDLADVLAGELGDRGADGLLRDLELPLVDVLARMERTGIATDGAYLSSL 535

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
                  +       Y + G + NL SPKQL ++LF +L  P   K KTG     A   +
Sbjct: 536 EKSFDAQVQDAAAEAYAVIGREVNLGSPKQLQEVLFDQLGMPKTKKIKTGYTTDAASLTD 595

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                 +P ++++L  R   +++ T  + L   +     R+HT +      TGRL+S +P
Sbjct: 596 LFARTQHPFLEHLLAHRDAIRLRQT-VEGLLRSVAPDG-RIHTTFQQTIAATGRLSSADP 653

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+T+ G++IRRAF+       L++ADYSQIE+RI+AH++    L   F +  D+
Sbjct: 654 NLQNIPIRTEAGRQIRRAFVVGDGYETLLTADYSQIEMRIMAHLSGDEGLIDAFRSGEDL 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H  V + +FGV  ++V+P MR   K +++ + YG+S + L+ QL I  SEAA  ++ YF 
Sbjct: 714 HSYVGSRVFGVPTDEVTPAMRSKIKAMSYGLAYGLSSYGLSQQLTIEVSEAAGLMQDYFA 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF G+ +Y+    +  R  GY +TI GRR +  ++ S     R   ER A+NAPIQGSAA
Sbjct: 774 RFGGVRDYLTGVVDVARTTGYTQTILGRRRYLPDLTSDNRQRREAAERMALNAPIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA--CLPK 955
           D+ + +M+ V + L    LA+++LLQ+HDELV EV   E      ++   M  A      
Sbjct: 834 DLIKVSMLGVDRELTRRGLASRLLLQVHDELVLEVAAGEREEVEALVREQMGAAGDAATD 893

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L VPL V++ V  +W +  
Sbjct: 894 GPLDVPLDVSVGVGGSWHDAG 914


>gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5]
 gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5]
          Length = 871

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/983 (30%), Positives = 475/983 (48%), Gaps = 121/983 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+  + L+DG S + RAFY  P L+   +GL  NAI GF N+++K+L   + E    +
Sbjct: 1   MNKK--IVLIDGHSILNRAFYGVPDLTN-SEGLHTNAIYGFLNIMFKILDEEKPE----Y 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  A TFR+E+Y DYK  R  + E L  Q+P+++   QA  I  IE  G EADD+
Sbjct: 54  LTVTFDVHAPTFRHEMYADYKGTRKPMAEELRQQVPVIKEVLQAMNIEIIEQAGLEADDL 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGI 174
           + T ++I E++G  V IIS D+D +QL +    +     +      E      V +K+G+
Sbjct: 114 LGTISHICEEKGMDVAIISGDRDTLQLATEHVKIRIPKTKQGRTEVEDYYAADVKEKYGV 173

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ DNIPG+PG+G KTA  ++ EYG +                EN  
Sbjct: 174 TPTEFIDVKALMGDASDNIPGVPGVGEKTATKIIVEYGTI----------------ENAY 217

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
            +AE                           +   PR    L+       +++   T + 
Sbjct: 218 AHAE---------------------------EIKPPRASKNLQEYWDQACMSKTLATINT 250

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
            A                 IA   E        T +      +    N         L R
Sbjct: 251 HA----------------DIAFNLEAAEHGNPYTKEAHDYFQRLQFKN--------LLSR 286

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD--AFHSKPIAIAIS 412
               +        + +I + K+ ++ +++          I  D  +     + P      
Sbjct: 287 FDVETSANKVESHFKEITDKKEAEKILKEASQAECVGAVITEDAGNVLPLFAHPSG---- 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                     +V   +              N   + +   L +   +     +    KY 
Sbjct: 343 --------YGRVSIAYGP--EQIYSILCDTNMDIEYLFGKLTEIAGSVKTFAMFDLKKYL 392

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
             V            D+ + +Y+L+  ++++D   +A++ L     E             
Sbjct: 393 PHVKAP---DQEKCFDVTVAAYLLNPLKNNYDYEDVAREQLGLMIDE------------- 436

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              + V   A   +         LR K+  E + H++  ++ P++  +  ME  GIQ++ 
Sbjct: 437 --KADVMTKACYEAYTAFAAVKPLRDKMQAEGMYHLFTDIEMPLVFTLFDMEQAGIQVEA 494

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + LK    ++   ++ LE+ IY+++GE FN++SPKQLG +LF  ++ P+G KTKTG   +
Sbjct: 495 EALKFYGEQLGGRIVELEKEIYEMAGETFNINSPKQLGVVLFDHMQLPNGKKTKTGY--S 552

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+      D P+++ ILE+RQL+K+KSTYAD L  +I     R+H  ++   T TGR
Sbjct: 553 TAADVLDKLAPDYPVVEKILEYRQLTKLKSTYADGLAVYIGADG-RIHGKFNQTITATGR 611

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++S EPNLQNIP++ +LG+ IR+ F+       I ADYSQIELRILAH +    L Q ++
Sbjct: 612 ISSTEPNLQNIPVRMELGRLIRKVFVPKEGYVFIDADYSQIELRILAHCSGDEQLIQAYK 671

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++ DIHRM A+++F    E+V+   RR+AK +NF I+YGIS F L+  L I R EAA YI
Sbjct: 672 DARDIHRMTASQVFHTPFEEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAQYI 731

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF  +PGI  +++ T    ++ GYV T+FGRR    E+ S     RN  ER A+NAPI
Sbjct: 732 ENYFETYPGIKRFLDDTVAHAKEEGYVVTLFGRRRPVPELKSSNFMQRNFGERVAMNAPI 791

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI V++ L++  L ++M+LQ+HDEL+ E   EEI    +I+   ME+A 
Sbjct: 792 QGSAADIMKIAMIGVNRELKEKGLRSRMILQVHDELLIEAHREEIGEVQEILKRQMEQAA 851

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
               +L VPL V++    NW E 
Sbjct: 852 ----DLDVPLIVDMHTGENWYEA 870


>gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317]
          Length = 881

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/990 (31%), Positives = 488/990 (49%), Gaps = 125/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++Q  +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ 
Sbjct: 116 DDIIGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I               
Sbjct: 176 GLTPKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY-------------- 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E+ +  + S+                  + E+    +  +FL          ++AT  
Sbjct: 222 --EHIDEMKQSK------------------MKENLINDKEQAFLSK--------KLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV + I++ + +G  ++  +      K   F+    + + +  E     +  
Sbjct: 253 ----NTSAPVDVSIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILF 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E + +  +     D                        +  +     +    + + +A  
Sbjct: 306 EVVHEFKEEMFTTD-----------------------MALYVEMMGDNYHTEEIVGVAWG 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T         K   +  DLSV  ++                  +  +   LK  ++ K  
Sbjct: 343 TE--------KKIYVTNDLSVFENR--------------AFHSWITDPTRLKKVYDAKRT 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +        K  K  
Sbjct: 381 YVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKG 440

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P ++        H       I  L   L  +L  +    ++ +++ P+  ++++MEI+G
Sbjct: 441 LPEEE---ELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISG 497

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 498 IKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 557

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    
Sbjct: 558 GY--STAVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGK-VHTRYVQTL 614

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ D G+KIR+AF+       + S+DYSQIELR+LAHI+    
Sbjct: 615 TQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEH 674

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 675 LKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISR 734

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +INS   +IR+  ER
Sbjct: 735 KAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAER 794

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVPE+E+ +  +++ 
Sbjct: 795 TAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVK 854

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME+A    ++L VPL  +      W E 
Sbjct: 855 EVMEQA----VSLHVPLITDSSWGKTWYEA 880


>gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
 gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
          Length = 889

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/987 (33%), Positives = 486/987 (49%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        S
Sbjct: 14  DKKKLLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PS 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 70  HVLVAFDAGKTTFRTEMYSDYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K G+ 
Sbjct: 130 IIGTLGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLT 189

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN++ 
Sbjct: 190 PAQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLI- 248

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
                                           +  +             ++++  T +  
Sbjct: 249 -------------------------------IDKEQ-----------AFLSKLLATIETQ 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + ++     G  +E        +   Q      Q   I+S   P+ L    +
Sbjct: 267 A----PIEIGLDDLVYNGPDVENLGKFYDEMGFKQLK----QALNISSTDAPESLDFAIV 318

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +SQ  ++ DS                        F       +      +  A S  D
Sbjct: 319 DHVSQDMLSADS-----------------------IFHFELFGENYHTDDLVGFAWSCGD 355

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++    LK+F E        ++ K  K++
Sbjct: 356 K--------------------LYATDKLELLQD--PILKEFLEKTSLK--VYDFKKAKVL 391

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R G++++    D  L  Y+L S   +++I++IA  +      +      K  K +IP 
Sbjct: 392 LNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIANLYGQTYLADDETFYGKGVKKAIP- 449

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI++
Sbjct: 450 ---EREKFLEHLARKVAVLVETEPVLLEKLGEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 506

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 507 KKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVGLQDWILDDGK-IHTRYVQDLTQT 625

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 626 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 685

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 686 AFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 745

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 746 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 805

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L +    TKMLLQ+HDE+V EVP+ E+     ++  +M
Sbjct: 806 NSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTM 865

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 866 EEA----IQLSVPLIADENEGATWYEA 888


>gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 886

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/988 (33%), Positives = 500/988 (50%), Gaps = 119/988 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S ++RAF+A           DGL   AI GF  ML  +L+N   ++ 
Sbjct: 1   MAKQ--LLLIDGNSIVFRAFFAMHNQIDKFTNKDGLHTAAIYGFKLMLDHVLENFHPDA- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD   VTFR ++Y DYK  R K PE L  QLP VR   +  G+ + E++G+EA
Sbjct: 58  ---ALVAFDAGKVTFRTKMYGDYKGGRSKTPEELTEQLPYVRELVKDSGLHSYELKGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     +  G+   I++ D+DL QL S  T +  T K     E    EHV +K G
Sbjct: 115 DDIIGTLAKEGDAAGYETLIVTGDRDLTQLASEHTTVAVTHKGVTDTEHYTPEHVQEKLG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ ++AL GD+ DN PG+  IG KTA  L++++G++E I                
Sbjct: 175 ITPAQIIDMKALMGDTSDNYPGVTKIGEKTAIKLVKQFGSVEGIY--------------- 219

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E  +  + S+                           L+              +A    
Sbjct: 220 -ENIDELKKSKM-----------------------KEHLVE----------EEEIARQCK 245

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
             A  +    +++   + +    +TE   D   +   F S   + +    +Q P+     
Sbjct: 246 TLATILRDAPIEVKLADLEYHGPQTEKLID-FYQKMDFQSFLKKMAVSPDDQEPE----- 299

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    I    YT++  T D    + KL   GS   ++                   
Sbjct: 300 ---------IAPIKYTEL--TADNLDLIAKLGDRGSFYLEM------------------P 330

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                 + F    +  D     S+D   +     E+    + +  N    K   N K   
Sbjct: 331 DPNYHTSPFAGFALGNDEQWLVSRD--PELLKAPEV----QNWLTNSKIKKDVFNAKAQI 384

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L+R GIS+ G + D++L SY+L++  +S+D+  +A +     +    +   K  K +I
Sbjct: 385 VGLNRLGISLDGIDFDLLLASYLLNTNDNSNDLGKLAHEHGYDDVQTDEEVYGKGAKRTI 444

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D    +H    +  I QL   L  +L   + L +Y  ++ P+  V+++MEITG+
Sbjct: 445 PDD---DQLFFQHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLAKMEITGV 501

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D   LK + +++++ L  +EE IY  +GE+FN++S KQLG ILF KLK P   KTKTG
Sbjct: 502 HVDAQTLKNMGSKLTERLTEIEEQIYQEAGEEFNINSTKQLGKILFEKLKLPVIKKTKTG 561

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +      PI++NIL++RQ+SK++STY   L   I+   Q++HT Y    T
Sbjct: 562 Y--STAVDVLEKLAPQAPIVENILQYRQISKLQSTYIKGLLKVIHSSDQKIHTRYLQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++   G+ IR+AF+      ++ S+DYSQ+ELR+LAHI     L
Sbjct: 620 QTGRLSSVDPNLQNIPVRLPEGRLIRQAFVPSHEGWQIFSSDYSQVELRVLAHITGDHNL 679

Query: 768 YQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+N  DIH   A  IF +  + ++   MRR AK +NF I+YGIS + LA ++ + RS
Sbjct: 680 QEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAKAVNFGIVYGISDYGLAQRIHVSRS 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I+ YF  FP + +YI  T  F RQNGYVETI  RR +  +INS   S R+  ER 
Sbjct: 740 QAHEFIQNYFKEFPKVKDYIHDTIEFARQNGYVETITHRRRYLPDINSKSFSRRSFAERT 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI +   LE  +L  KMLLQIHDELVFE P+EEI   S+++  
Sbjct: 800 AMNTPIQGSAADIIKIAMIKMQDELEKRQLKAKMLLQIHDELVFEAPKEEIPVLSKLVPD 859

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M+ A    + L VPLKV+ K  + W +
Sbjct: 860 VMDSA----VKLSVPLKVDSKYGDTWYD 883


>gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
 gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
          Length = 911

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/992 (31%), Positives = 506/992 (51%), Gaps = 118/992 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   L L+DG+S  +RAFYA          H GL  NA+  F N   ++++    +  
Sbjct: 20  MTK--TLLLIDGNSLAFRAFYAMYNQLDRMVAHTGLHTNALVAFNNFFDQVVEKMNPD-- 75

Query: 58  ASHFAVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
             +  V +D      TFR +I+ DYK +R   P  L  Q P +R      GI + E+ GF
Sbjct: 76  --YALVAWDAGKGATTFRAKIFDDYKGDRQTTPPELSEQFPYLRKMVDLHGIHSYELPGF 133

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADDII TY+ +AEK G   TII+ D+DL QLV+    +  T K     ++   + + +K
Sbjct: 134 EADDIIGTYSKLAEKAGLKTTIITGDRDLTQLVTDNVSVNVTKKGVTELDRYTPKFLAEK 193

Query: 172 WG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           WG I P +++ +++LTGD+ D+ PG+  +G KTA  LL E+G+L+ I  +   +K  K +
Sbjct: 194 WGGITPSQVIEMKSLTGDTSDHYPGVTKVGLKTAIKLLNEFGSLDGIYQHIDSMKTSKLK 253

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           EN+L   E+A  + +L  +RTD P+                       LE  +LIN+   
Sbjct: 254 ENLLNDKESAYRAHELATIRTDAPV----------------------ELEMKELINQ--- 288

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                                        I+    I   +      Q +KI+S Q    +
Sbjct: 289 ----------------------------PINFQELIPFYEELDFKVQLAKIHSMQKAGMV 320

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG-SASFKIITDTMDAFHSKPIAI 409
             ++ ++ +           +  T+     +  L  I    +    TD+ +   +K   I
Sbjct: 321 GQDQEEEKN-----------VQVTELKAANLDHLSEIKNYLTVYFQTDSDNYHTAK---I 366

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           +   +  ++D  F             S+D    N+L       ++K F+     K   N 
Sbjct: 367 SAFVVGNENDGYFA------------SRDLELLNSLV------VRKLFK-GDLPKYVFNA 407

Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRK 525
           K   ++L+R G+ +   + D +L+SY+LD+  + + +A++A ++   L    +      K
Sbjct: 408 KELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEVYGSGVK 467

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             IP +   +  +  H    ++ I +L      KL   +   +Y +++ P+  V++ MEI
Sbjct: 468 FKIPEN---NETLFSHMANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEI 524

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI++DQ  LK++  E  + +  LE+ IY+ +G++FN++SPKQL D+LF  +K P   KT
Sbjct: 525 NGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQEFNINSPKQLADLLFAHMKIPPIKKT 584

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG   +TA ++ +      P +  IL++RQL+K+ STY   L   +N    ++HT Y  
Sbjct: 585 KTGY--STAANVLEELAEKYPFVGLILQYRQLAKLNSTYVKGLLEVVNPDDSKIHTRYLQ 642

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S++PN+QNIP + + G++IR+AF+      ++  +DYSQIELR+LAH+   
Sbjct: 643 TLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGD 702

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             L + FE+  DIH   A  IFG++ ++ ++   RR AK +NF I+YGIS F LA +L  
Sbjct: 703 ENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGT 762

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R E  + I+ YFH FP +  +I+       + GYVETI  RR +  +I+S   ++R+  
Sbjct: 763 SRIEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFA 822

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A N PIQGSAADI + AMI + ++L+D+ L  KMLLQ+HDEL+FE P++EI    ++
Sbjct: 823 ERTATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEEL 882

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +   M+ A    + L VPL+V      NW +E
Sbjct: 883 VPKVMDSA----VKLNVPLRVEAHHGVNWYDE 910


>gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1]
 gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1]
          Length = 922

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/978 (32%), Positives = 503/978 (51%), Gaps = 64/978 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             ++L+D  + I+R ++           G  V+A  GF   L+ +++  + E+      V
Sbjct: 2   KEIYLIDALNIIFRNYHVMKNNPLTNSKGENVSAFIGFFKTLFFIIKEKKPEN----LIV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E+QG+EADD+IA+
Sbjct: 58  TFDSETQTFRQKQYPSYKATRDAPPDNLIPQIHWIKEGLIKANIPMFELQGYEADDLIAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVC 181
           +T  AE+  +   IIS DKDL+QL+S  T ++        +++ ++VIKK+GI   ++  
Sbjct: 118 FTKKAEQNNYLTYIISPDKDLLQLISNQTKIFKIENSSFLEMNNDYVIKKFGINKSQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             ++ GD  DNIPGI GIG K AA LL E+  L  I  N S I   K RE +L   E A 
Sbjct: 178 YLSIVGDPSDNIPGIKGIGQKGAAKLLNEFHTLNGIYENLSLI-NNKYREILLREKENAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS KL+ L  D+ +   LE   LE+     +I   +    T LI    +           
Sbjct: 237 LSYKLISLVEDLELP-SLETFRLENL-KEDIILLFEEYSATTLIKSYKSLL--------- 285

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL-SQ 360
                               +   I T Q S      +K N E T               
Sbjct: 286 -------------------KKKNIINTMQKSIFDINKTKANKENTKDLQSTTLYANTLKT 326

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               N  Y  I+  +++   +++L+     +    T +++ + S  I I++S  +     
Sbjct: 327 IQEENVKYKTILKKEELDLLIEQLKKASYIAIDTETTSINVYESNIIGISVSFKE----- 381

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               E+ +I +      ++  KN++ K+ I+    + F N     IG N K+D  VL R+
Sbjct: 382 ---FESYYIPI------ETKEKNSIGKDYIIQKFNELF-NSQPKLIGQNYKFDYKVLKRH 431

Query: 480 GISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G ++   + D M+ +YV+D   +   +  +A K+L +   +  +       +  I     
Sbjct: 432 GFNVISAYFDTMIAAYVIDPN-TKVSLDFLAAKYLMHKNIKYEEIVPQHSTLKDIPLEIA 490

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A E++++  +L+ +LR KL  + L  + + ++ P  +V+ ++E  GI +D + L Q 
Sbjct: 491 SNYAAEDADITFRLFNILRKKLKEDNLESLMKNIEMPFSNVIIEIEENGIYLDSNYLTQY 550

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E+ + L ++E  +    G +FNL+S KQL  ILF KL       +K  +  +T   + 
Sbjct: 551 GHELEQELKTIENEVIQSIGIEFNLNSSKQLHTILFEKLNIIV---SKNVKQDSTDIKVL 607

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +  I+ ++ +RQL+K+K+TY D+L   IN++T ++HT +    T TGR++S  P
Sbjct: 608 ETIKDQHESIEKLINYRQLAKLKNTYTDNLIEFINEKTNKIHTNFMQTKTATGRISSTAP 667

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPIK + G+KIR AF        ISADYSQIEL ILAH+++   L + F +  DIH
Sbjct: 668 NLQNIPIKNERGRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEAFTHKKDIH 727

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+++F V+   ++P MRR AK+INF IIY +S FRL+ +L I R EA ++I  YF+ 
Sbjct: 728 IQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQELSIKRDEAQNFIDSYFNL 787

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +  I  +I+   +FV+QNGY ET+  RR +  EINS     R   ER AIN+ IQGSA+D
Sbjct: 788 YSKIKTFIQNQIDFVKQNGYSETLLKRRRYIREINSQNYLERTGAERMAINSIIQGSASD 847

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI V+   +++ L +K+LLQ+HDE++ E PEEE   A  II   ME A      L
Sbjct: 848 IMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIESPEEECEKAQIIIKEMMENA----YPL 903

Query: 959 RVPLKVNIKVSNNWQEEN 976
           ++PLK NI+   +W + +
Sbjct: 904 KIPLKTNIETGKSWGDIH 921


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/981 (29%), Positives = 510/981 (51%), Gaps = 113/981 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K+N L L+DG+S I RAF+A P +     GL  NAI GF  ML+K++++       SH +
Sbjct: 2   KKNRLLLIDGNSIINRAFFALPPMDNGQ-GLHTNAIYGFLTMLFKMIKS----YEPSHIS 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD  A TFR++ Y +YKA R K+P  L  QL  ++       I   EI+G+EADDI+ 
Sbjct: 57  VAFDMKAPTFRHKSYTEYKAGRKKMPGELAMQLDPLKDVLDKLNIDREEIEGYEADDILG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T +  AEKEG+ V I++ D+D +QL S  T +  T K     E+ D + V+ ++ + P++
Sbjct: 117 TLSLDAEKEGYEVYIVTGDRDAIQLASDNTRVLITKKGVGEVEEYDAQAVMDRYSLTPDQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L+ L GD  DNIPGIPGI                          +K   + +LEY  
Sbjct: 177 FIDLKGLMGDKSDNIPGIPGI-------------------------GEKTGIKLLLEYK- 210

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                           +   L+       N  +L    K      + + + +        
Sbjct: 211 ---------------TVQGVLD-------NVDKLKGAQKKKVEENMESALMSKDLATIFR 248

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P+   ++       ++E  +      +  +F+SL  + + +  ++             
Sbjct: 249 EVPLDYSLDQMAFGEFSVEEVVK---AFQELKFTSLIARLNDLTGQE------------- 292

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +  +  +I    D   ++ +++  G    K+     +                  
Sbjct: 293 -----DQAADIEICKLTDFDAFIDQVKDRGQIFMKVFRTDANILDQD------------- 334

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V   ++ L         G + L       ++   E+E   KIG+ +K D + L  
Sbjct: 335 -----VYMTYLSLGNDKLYRVHGDDIL------KIRTILEDEDIEKIGYEMKADYVALKP 383

Query: 479 YGISMRGF-EDIMLMSYVLDS-GRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKI 533
           YGI +R    DI +  YV+DS   +S+DI SI+ K++     +++++L     ++   ++
Sbjct: 384 YGIDLRNMAFDIAIAEYVIDSKTSTSYDIDSISSKYIYKTIMSKEDLLGKGAKALDYRQV 443

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              ++ ++     + I+  +  ++  +  ++L  ++  ++ P+++V+++ME  GI +D+D
Sbjct: 444 DLEKLDQYVSGMLSTIIGSYPKMKKIIDEDQLSMLFYDVEMPLVEVLAEMEYAGICVDRD 503

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L  ++ +  + +   E+NI++L+G+ FN++SPKQLG ILF KL  P   KTKTG + T 
Sbjct: 504 ILSNLAKDFDEIIDKTEKNIHELAGQDFNVNSPKQLGHILFEKLGLPVIKKTKTG-YSTN 562

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+ LE++    + II  I E+R + K+KSTY D +   +N +  R+H+ ++   T TGR+
Sbjct: 563 AEVLEKLR-DKHEIINMITEYRSVVKLKSTYVDGIEALVNAKDGRIHSSFNQTITTTGRI 621

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PN+QNIP++TD+G++IR+ FI+  +  L+ ADYSQ+ELR+LAH+++   + + F +
Sbjct: 622 SSTDPNMQNIPVRTDMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFNS 681

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  A+++F V+  +V+P++R  AK +NF IIYG S F LA  L I + +A +YI+
Sbjct: 682 GEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGIIYGKSDFGLAQDLNISQKKAKEYIE 741

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF+++  I  +++   +   + GY  TIF RR +  EI S     +N  +RAA+NAPIQ
Sbjct: 742 SYFNKYETIKAFMDHIVSEAEEKGYSTTIFNRRRYIPEIKSSNFVEKNRGKRAAMNAPIQ 801

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM++V+  L++  L ++++LQ+HDEL+ E   +E+T    ++   ME A  
Sbjct: 802 GSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELIVEATADELTQVEVLLREEMENA-- 859

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             +NL V LKV++ +  +W E
Sbjct: 860 --VNLGVDLKVDLNIGKSWYE 878


>gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
 gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
          Length = 875

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/984 (32%), Positives = 496/984 (50%), Gaps = 119/984 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+    ++E    +
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM----KEEINPDY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD+
Sbjct: 55  IVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ DKD +QL +    +  T K     E  D   +++++G+ P
Sbjct: 115 IGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMVEEFGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L N   IK K         
Sbjct: 175 KEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIEIVLENIENIKGK--------- 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                             +L   L       + ++   T  C+ 
Sbjct: 226 ----------------------------------KLKENLHEYREQAIFSKKLATIICN- 250

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V +D++  + K              +  +F SL ++  K + E+           
Sbjct: 251 -----VPIDMSLEDIKSKEEYDINKVREMFEKLEFKSLMNKVGKSDEEE----------- 294

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     SY  IV+ ++ +     +            D    F  + I +   +  +
Sbjct: 295 ----TVEEEVSYKNIVSLEEFKDLKNNIIKYK------ENDLYLYFELEDIVLFSKSRVK 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +FK E   ID            N   ++ +   K+ FE++   KI ++ K  + +L
Sbjct: 345 TLYANFKDEVYRIDF-------EMLLNNTKEQFIEVCKEMFESKEIKKITYDAKNPRTIL 397

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            + GI   G   DI L +Y++D  R  ++I+S+A ++L        E LK          
Sbjct: 398 RKLGIEFNGIKFDINLAAYLIDPVRKEYEISSLASEYLFKNINREDEFLK---------- 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                     I+  N++  L+ +L  K+  + +  +  ++++P+ + +S ME  G ++D+
Sbjct: 448 ----------IKEVNIMPNLYKVLEEKIKEQDMEELLYKVEQPLTETLSAMETEGFKVDK 497

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D+L Q+       + S +  IY +S E+FN++SPKQLG ILF KL  P   KTKTG + T
Sbjct: 498 DILLQLEKRFKGEIESTQLEIYSMSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YST 556

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ L+++    +PII  I  +RQL+KI STY + L   I++  + +H+ ++   T TGR
Sbjct: 557 NAEVLDKLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDEDGK-IHSNFNQTVTATGR 614

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIPIK ++G++IR+ FI       ++SADYSQIELR+LAHI+    +   F
Sbjct: 615 LSSTEPNLQNIPIKYEMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAF 674

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   A+E+F V IE+V+P MR +AK +NF I+YGI  F L+  L I R EA  Y
Sbjct: 675 NEHDDIHTKTASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQY 734

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y  R+P +  Y+E       + GYV TI  RR +  E+ S    ++   ER A+N+P
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSP 794

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM++VH+ L++    + ++LQ+HDEL+  V ++E+     ++   ME+ 
Sbjct: 795 IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEMEQV 854

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
               + L+V L V+I + NNW E 
Sbjct: 855 ----LELKVGLDVDINIGNNWYEA 874


>gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
 gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
          Length = 949

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1020 (27%), Positives = 474/1020 (46%), Gaps = 139/1020 (13%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +++  L L+DG S  YRAF+A P  + +   G   NA+ GF +ML  LL++       +H
Sbjct: 21  ERKPVLMLLDGHSLAYRAFFALPAENFKTATGQTTNAVYGFTSMLINLLRDEE----PTH 76

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR+E+YP YKA R K P+    Q+ L +    A GIP + I+G+EADDI
Sbjct: 77  IAAAFDVSRKTFRSEMYPAYKAQRSKSPDEFNGQVDLTKEVLDALGIPVMAIEGYEADDI 136

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    A+ EG++V +++ D+D +QLV+ +  +    K      +     V KK+G+ P
Sbjct: 137 IATLATQADAEGYSVLVVTGDRDSLQLVNDSVTVLYPRKGVSELTRFTPAEVEKKYGLTP 196

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIPG+G KTA+  ++EYG+L +++ +   +K  K  + +   
Sbjct: 197 TQYPDYAALRGDPSDNLPGIPGVGEKTASKWIREYGSLASLVDHVDEVKG-KVGDALRAN 255

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             + + +R+L  L  D+ +    + L +   +                 +R+   +D   
Sbjct: 256 LASVQTNRQLTELVRDMQLPAGPDELAMVGWDR----------------DRIHQLFDD-- 297

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                            +F  L D+     S  TP+      L 
Sbjct: 298 --------------------------------LEFRVLRDRLFSTLSSATPEAESGFDLD 325

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++   +++ W+ +    G +   + T       + P  +AI+  D 
Sbjct: 326 G------------AVLGQGEVRAWLAEHAGTGRSGLAV-TAPHVVVGADPTGLAIAAADG 372

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                      ++D++   + D              L  +  +    K  H +K+    L
Sbjct: 373 TSA--------YVDVTAVDADDE-----------QALADWLADPAMGKALHEVKWGIHAL 413

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI--DKI 533
              G ++ G   D  L +Y++  G+ + ++  +A ++L    +    S    + +  D  
Sbjct: 414 RSRGWTLAGVTSDTSLAAYIVRPGQRTFNLDDLALRYLRRELRADDGSGDGQLSLLDDDG 473

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +++ E  +  +  +++L  +L  +L     L +   ++ P+  V++ +E  GI +D D
Sbjct: 474 GAAKLAEQHMLEARAVVELAEVLDTELDRIDSLPLLTEMELPLAFVLADLEAAGIAVDVD 533

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
              ++    ++ +       YD+ GE+ NL SPKQL  +LF KL  P   KTKTG     
Sbjct: 534 HFGELEKNFAQRIRVAANAAYDVIGEQINLGSPKQLQTVLFDKLDMPKTKKTKTGYTTDA 593

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                     ++P + ++LE R  +++K T  D L   +     R+HT ++     TGRL
Sbjct: 594 DALQALYEKTEHPFLAHLLEHRDATRLKVT-VDGLLKSV-ADDGRIHTTFNQTIAATGRL 651

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS---------------------------------- 739
           +S EPNLQNIP++T  G++IR+ FI                                   
Sbjct: 652 SSTEPNLQNIPVRTAAGREIRQGFIVGAGSGASGDGGVGAGSGASGPDGVGAGSGSSGHD 711

Query: 740 ----PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
                    L++ADYSQIE+RI+AH+++   L + F    D+H  V +  FGV I++V+ 
Sbjct: 712 GGTGDGFDCLMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVPIDEVTT 771

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           +MR   K +++ + YG+S F LA QL+I R EA + +  YF RF G+ +Y+       R+
Sbjct: 772 EMRHRVKAMSYGLAYGLSAFGLAAQLKISRDEAKEQMDAYFARFGGVRDYLHDVVAEARR 831

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           N Y  T+FGRR +  ++NS     R   ER A+NAPIQG+AADI + AMI+VHK L+  +
Sbjct: 832 NEYTATLFGRRRYLPDLNSDNWQRRQSAERMALNAPIQGTAADIIKVAMINVHKRLQSEE 891

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L ++MLLQ+HDELV EV   E      ++   M  A    I L VPL+V++    +W + 
Sbjct: 892 LRSRMLLQVHDELVVEVATGERDAVEAVVREEMGAA----ITLSVPLEVSVGFGRSWDDA 947


>gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679]
          Length = 881

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/990 (32%), Positives = 489/990 (49%), Gaps = 125/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++Q  +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ 
Sbjct: 116 DDIIGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I               
Sbjct: 176 GLTPKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY-------------- 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E+ +  + S+                  + E+    +  +FL          ++AT  
Sbjct: 222 --EHIDEMKQSK------------------MKENLINDKEQAFLSK--------KLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV + I++ + +G  ++  +      K   F+    + + +  E     +  
Sbjct: 253 ----NTSAPVDVSIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILF 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E + +  +     D                        +  +     +    + + +A  
Sbjct: 306 EVVHEFKEEMFTTD-----------------------MALYVEMMGDNYHTEEIVGVAWG 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T         K   +  DLSV  ++                  +  +   LK  ++ K  
Sbjct: 343 TE--------KKIYVTNDLSVFENR--------------AFHSWITDPTRLKKVYDAKRT 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +        K  K  
Sbjct: 381 YVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKG 440

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P ++        H       I  L   L  +L  +    ++ +++ P+  ++++MEI+G
Sbjct: 441 LPEEE---ELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISG 497

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 498 IKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 557

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y  A 
Sbjct: 558 GY--STAVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGK-VHTRYVQAL 614

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ D G+KIR+AF+       + S+DYSQIELR+LAHI+    
Sbjct: 615 TQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEH 674

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 675 LKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISR 734

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +INS   +IR+  ER
Sbjct: 735 KAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAER 794

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVPE+E+ +  +++ 
Sbjct: 795 TAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVK 854

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME+A    ++L VPL  +      W E 
Sbjct: 855 EVMEQA----VSLHVPLITDSSWGKTWYEA 880


>gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27]
 gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27]
          Length = 877

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/974 (30%), Positives = 479/974 (49%), Gaps = 110/974 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    +    + AV 
Sbjct: 6   KKLMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEINPD----YIAVA 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + 
Sbjct: 61  FDKGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSL 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           +        AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++
Sbjct: 121 SKKFGAPDMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVI 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GDS DNIPG+PG+G KTA  L+ EYGNLE++  +   I  KK +E ++E     
Sbjct: 181 EMKALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVEN---- 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              ++L                                      ++R   T   D     
Sbjct: 237 ---KELA------------------------------------FLSRELATIKTDMELSY 257

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V   +       +            +T  F+ L+ + +++   +       E       
Sbjct: 258 EVEDFVQNFHASEV--------QPLFETLGFTKLTPRIAQVMGCE-------EVALGDPG 302

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     + +  D +          + +  +I D    F          T+     +
Sbjct: 303 SLFAQQEEISLDDLADAKSLTADFYKDKTVAVHVILDGKTPFR---------TVTNAYLS 353

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +        D     +     K  +T +    ++ F  +        N      V     
Sbjct: 354 NGDTIVKTDDTKAVLAVLQGAKAIVTTQTKEIIEAFGADVPAEISLFNADKTARV----- 408

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  D+ L++Y+LD  R+++    + +++              S+P   I++  V  
Sbjct: 409 ------HDMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIANGSVDV 446

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             +     +L +  +       E+L  +YE ++ P+I  +  ME  GI ID + L + +A
Sbjct: 447 ECVSMVKALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTA 506

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              + L  ++E IY+L+GE FN++SPKQLG ILF K+K P   KTKTG   +T  ++  +
Sbjct: 507 RFKEELTQVQEEIYELAGETFNINSPKQLGVILFEKMKLPIIKKTKTGY--STDAEVLDM 564

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++PI++ IL +R ++K+ STY + L   IN +T R+HT ++   T TGRL+S +PNL
Sbjct: 565 LRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNL 624

Query: 721 QNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F        L+SADYSQIELRILAH++    L + F    DIHR
Sbjct: 625 QNIPVRTEKGREIRALFYPGTGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHR 684

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G + ++V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+
Sbjct: 685 FTAAEVLGKSQDEVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRY 744

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI
Sbjct: 745 PKVKEYMDRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADI 804

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM  V + LE+    +++LLQ+HDELV EV   E+    +++  +M+      + L+
Sbjct: 805 IKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSV----VELQ 860

Query: 960 VPLKVNIKVSNNWQ 973
           VPL V++  + NW 
Sbjct: 861 VPLIVDVHHAENWA 874


>gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44]
 gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44]
          Length = 877

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/974 (30%), Positives = 478/974 (49%), Gaps = 110/974 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    +    + AV 
Sbjct: 6   KKLMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEINPD----YIAVA 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + 
Sbjct: 61  FDKGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSL 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           +        AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++
Sbjct: 121 SKKFGAPDMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVI 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GDS DNIPG+PG+G KTA  L+ EYGNLE++  +   I  KK +E ++E     
Sbjct: 181 EMKALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVEN---- 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              ++L                                      ++R   T   D     
Sbjct: 237 ---KELA------------------------------------FLSRELATIKTDMELSY 257

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V   +       +            +T  F+ L+ + +++   +       E       
Sbjct: 258 KVEDFVQNFHASEV--------QPLFETLGFTKLTPRIAQVMGCE-------EVALGDPG 302

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     + +  D +          + +  +I D    F          T+     +
Sbjct: 303 SLFAPQEEISLNDLADAKSLTADFYKDKTVAVHVILDGKTPFR---------TVTNAYLS 353

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +        D     +     K  +T +    ++ F  +        N      V     
Sbjct: 354 NGDTIVKTDDTKAVLAVLQGAKAIVTTQTKEIIEAFGADVPAEISLFNADKTARV----- 408

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  D+ L++Y+LD  R+++    + +++              S+P   I++  V  
Sbjct: 409 ------HDMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIANGSVDV 446

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             +     +L +  +       E+L  +YE ++ P+I  +  ME  GI ID + L + +A
Sbjct: 447 ECVSMVKALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTA 506

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              + L  ++E IY+L+GE FN++SPKQLG ILF KL  P   KTKTG   +T  ++  +
Sbjct: 507 RFKEELTQVQEEIYELAGETFNINSPKQLGVILFEKLNLPIIKKTKTGY--STDAEVLDM 564

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++PI++ IL +R ++K+ STY + L   IN +T R+HT ++   T TGRL+S +PNL
Sbjct: 565 LRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNL 624

Query: 721 QNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F        L+SADYSQIELRILAH++    L + F    DIHR
Sbjct: 625 QNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHR 684

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G + ++V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+
Sbjct: 685 FTAAEVLGKSQDEVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRY 744

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI
Sbjct: 745 PKVKEYMDRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADI 804

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM  V + LE+    +++LLQ+HDELV EV   E+    +++  +M+      + L+
Sbjct: 805 IKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSV----VELQ 860

Query: 960 VPLKVNIKVSNNWQ 973
           VPL V++  + NW 
Sbjct: 861 VPLIVDVHHAENWA 874


>gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
 gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
          Length = 908

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/979 (32%), Positives = 508/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ ++    KE    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFVGFFKTLFFII----KEKNPKHL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP+YKA R   P+ L+PQ+  ++       IP  EI+G+EADD++
Sbjct: 56  IITFDSEIPTFRKQKYPNYKATRDAPPDDLIPQIGWIKKGLLKAKIPIFEIEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A +  +   IIS DKDL+Q++S    +         ++D E+VIKK+GI   ++
Sbjct: 116 ASFAKKATQNNYLTYIISPDKDLLQIMSEHIKILKIENNRFVEMDNEYVIKKFGINSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGPKGAANLLREFKTLKGIYSNLELI-TKKHQEILIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS  LV L  ++ I   +E+  L++     +IS  +      LI              
Sbjct: 235 AFLSYDLVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAITLIKTYK---------- 282

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                DI   E + +A ++   +++T K+                          +  L+
Sbjct: 283 ----RDILKQEEENLAQKSLFKQESTTKS--------------------------IDTLN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I   K++   ++ L+     S    T ++D + ++ I I+IS  + +  
Sbjct: 313 TIDTENVKYHSITTKKELDNLIESLKKAKYISIDTETSSLDIYTARLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+     FFE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EARGKIYIEKHYIIQKFNNFFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFAGISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  + L  +   ++ P  +V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNVFSKKLKEDSLDKLMHEIEMPFNNVIIEMEENGIYLDREYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELELIETEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +  G +  I+N+++ RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-GQHESIENLIKHRQIAKLKSTYTDNLIELINYKTNRLHTNFIQTKTATGRVTSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFIDSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER +IN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVRNTGYSETILKRRRYIKEINSNNYLERSAAERISINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P +E     +I+   ME A      
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L  PL+ NI+   +W E +
Sbjct: 890 LTPPLRANIETGKSWGEIH 908


>gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
 gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
          Length = 931

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/986 (29%), Positives = 465/986 (47%), Gaps = 74/986 (7%)

Query: 2   QKENHLF-LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            +E  +  ++DG+S ++RAF+A P      DG P NA+ GF NM  K++     +     
Sbjct: 7   ARERRVIAVIDGNSLMHRAFHAVPPTMNAPDGRPTNAVFGFLNMFLKMVDEFTPDG---- 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD      R E+ P YKA RP +   L  Q P+++    +  IP +E++G+E DDI
Sbjct: 63  VVCAFDKGRPKVRMEMLPQYKAQRPPMDTNLRAQFPMIKELLASLSIPVVELEGWEGDDI 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           + T     E  G  + +++ D+D+ QLV+    +  T K       +  E V   + GI 
Sbjct: 123 LGTLARRGEAAGCDMYLVTGDRDMYQLVTDHVHVVSTRKGLSDIAIMTPESVDDLYHGIT 182

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE +     L GDS DNIPG+PGIG K A+ L+ +YGNL+ ++ +A  +K  K  EN+  
Sbjct: 183 PELVPDFYGLKGDSSDNIPGVPGIGPKKASALIAQYGNLDEVIAHADEVKG-KMGENLRA 241

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + + A +SRK+  + TD PI   L  +     +   + + L  +    + NR        
Sbjct: 242 HIDDALISRKIATIMTDAPIECDLTEVAFPAFDAAAVSAALGGIGIMAMQNRFLALLGEG 301

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTI---KTSQFSSLSDQTSKINSEQTPQKLFL 352
           AA + P V  +   E   +A++     D      +  +  +  D+ S+         + +
Sbjct: 302 AAAV-PTVASLEMPEVLRVALDASSALDEAKHAREHEEMDACFDELSRALEAGEWLGVSM 360

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E   K +           +   + +  + + L           T   D        +   
Sbjct: 361 ED-DKEADALFGMTRRLWVATERALLSFEEPLGPRAIF-----TTDFDLSAGVIPGVLKL 414

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            L +    S   + +  +LS   S ++             L     +   L         
Sbjct: 415 VLTEGRVASSDAKALLHELSPVDSSEA-----------ELLDPLAVDSTRL--------- 454

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
                          D ++ +Y+LDS RS    A +A+ +L  +              + 
Sbjct: 455 --------------FDTVVAAYLLDSVRSDFTDAYLAETYLHASLPSAAG--------ED 492

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            + +     A   + +   L   L   L  +    ++ +++ P++ V++ ME  G+ +D 
Sbjct: 493 GAPADAVSIAARGAWLARTLREPLAAALEAQGADAIFTKIEMPLVRVLASMERAGMYVDP 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPS--GAKTKTGQ 649
             L   S E+   + +LE  I +L+G E+FNLSSP QL  ILF  L  P+    KT+ G 
Sbjct: 553 ARLAAQSDELVGQIQALEARIRELAGGEEFNLSSPMQLSRILFDTLGLPTAGLKKTQRGY 612

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A+ LE +   ++ I++ ILE+R+ +KIKSTY D+L   + +   RVHT Y+   T 
Sbjct: 613 YSTNAKVLEDL-AKNHEIVRLILEFREKTKIKSTYLDTL-GPLRRHDGRVHTTYNQTITA 670

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIP +++LG  ++RAF        ++ DYSQIELR+LAH++    L  
Sbjct: 671 TGRLSSSSPNLQNIPTRSELGHAVKRAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVS 730

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    D H   AA +FGV +++V+PQ+R  AK +NF I+YG   + L+  L IP +EA 
Sbjct: 731 AFNEGEDFHAETAARVFGVPVDEVTPQLRSRAKAVNFGIVYGQQAYGLSQTLDIPMAEAR 790

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + I  YF  +PG+  Y+++T  F +Q GY ET++GRR    E+  P  + R   ER A+N
Sbjct: 791 EMIDAYFRAYPGVRTYLDETVTFAKQTGYAETMYGRRRPIPELRIP--AQRMFGERTAMN 848

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            P+QGSAADI + AM+ V + L       KM+LQ+HDEL FE P  E+     ++   ME
Sbjct: 849 HPMQGSAADIIKIAMVHVAERLRAEGFTAKMILQVHDELDFECPVGEVDRLIAMVREEME 908

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
                   LRVPL  +  +   W E 
Sbjct: 909 GVA----ELRVPLIADASIGETWAEA 930


>gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
          Length = 881

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/990 (32%), Positives = 488/990 (49%), Gaps = 125/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++Q  +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K  F V ++S D+DL QL S    +  TVK     E    EHV +K+ 
Sbjct: 116 DDIIGTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I               
Sbjct: 176 GLIPKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY-------------- 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E+ +  + S+                  + E+    +  +FL          ++AT  
Sbjct: 222 --EHIDEMKQSK------------------MKENLINDKEQAFLSK--------KLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV + I++ + +G  ++  +      K   F+    + + +  E     +  
Sbjct: 253 ----NTSAPVEVSIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILF 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E + +  +     D                        +  +     +    + + +A  
Sbjct: 306 EVVHEFKEEMFTTD-----------------------MALYVEMMGDNYHTEEIVGVAWG 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T         K   +  DLSV  +Q                  +  + + LK  ++ K  
Sbjct: 343 TE--------KKIYVTNDLSVFENQ--------------AFHSWITDPNRLKKVYDAKRT 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +        K  K  
Sbjct: 381 YVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKG 440

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P ++        H       I  L   L  +L  +    ++ +++ P+  ++++MEI+G
Sbjct: 441 LPEEE---ELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISG 497

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 498 IKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 557

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    
Sbjct: 558 GY--STAVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGK-VHTRYVQTL 614

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ D G+KIR+AF+       + S+DYSQIELR+LAHI+    
Sbjct: 615 TQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEH 674

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 675 LKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISR 734

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +INS   +IR+  ER
Sbjct: 735 KAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAER 794

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVPE+E+ +  +++ 
Sbjct: 795 TAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVK 854

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME+A    ++L VPL  +      W E 
Sbjct: 855 EVMEQA----VSLHVPLITDSSWGKTWYEA 880


>gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a]
          Length = 908

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/979 (33%), Positives = 501/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ ++    KE    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFII----KEKNPKHL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDEIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                     + S F                Q+     L  ++
Sbjct: 289 EKENAD---------------------QKSLFK---------------QEPTTNGLDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKIKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A      
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 904

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/980 (28%), Positives = 472/980 (48%), Gaps = 104/980 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + +  L L+DG S  +RAF+A P  +     G   NA+ GF +ML  LL+  +     SH
Sbjct: 17  KTDQTLMLIDGHSMAFRAFFALPAENFSTTGGQNTNAVYGFLSMLATLLKEEQ----PSH 72

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR +++PDYKA R   P     Q+ +++   +  GI  IE + +EADDI
Sbjct: 73  IAVAFDVGRKTFRTDLFPDYKAQREATPPEFKGQVEILKDVLKTLGITTIEKEDYEADDI 132

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    A+  G+   I++ D+D  QLV+ TT +   ++      +   E V +K+G+ P
Sbjct: 133 IATLAVAAKPLGYDTLIVTGDRDSFQLVNDTTTVLYPMRGVSVLHRFTPEAVEEKYGLTP 192

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+P IPG+G KTA   + EYG+L+N+L +A  IK K         
Sbjct: 193 SQYPDFAALRGDPSDNLPNIPGVGEKTATKWIVEYGSLDNLLEHADEIKGKAG------- 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                                SF + L+  ++  ++        
Sbjct: 246 ------------------------------------NSFRERLDQVRMNRKLTEMIKDME 269

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             + P  L++ T +   +A E +     T         + +   + + +T  ++ +E ++
Sbjct: 270 LPVGPDDLEMGTADVAEVATEFDALEFGT---------NLRERVLAAVKTDGEIPVEAVE 320

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +  ++     + ++T+  +     +  +G+ +      T DA        +I+ +D 
Sbjct: 321 NRDEVGVDTLPLDEWLSTRRGRPLAVAVTGVGTPA------TGDAH-------SIAIVDT 367

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                                          E    L  +  +E   K+ H  K    +L
Sbjct: 368 DRRAVVADLADITP-----------------EAEKALAGWLADEASPKLLHGAKAVFHML 410

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G  +RG   D  + +Y+L  G+ ++++A + Q+ L         +  + + +    D
Sbjct: 411 AGRGFELRGIEHDTAIAAYLLRPGQRTYELADVYQRHLQRQLNP-SNNGSNQLTLLDAGD 469

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           SQV    ++ +  IL+L   L  +L       +Y  L+ P++ ++++ME TGI +D   L
Sbjct: 470 SQV---LVDEAVAILELAGELTSQLQEINGFELYRDLEIPLLSILARMEATGIAVDVATL 526

Query: 596 KQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           ++        +   EE   +L+G+   NLSSPKQL  +LF     P   KTKTG     A
Sbjct: 527 EEQLETFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAA 586

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +         +P + ++L  RQ  K+K+T  + L   +     R+HT ++     TGRL+
Sbjct: 587 EIEALAAKNPHPFLDHLLAHRQYQKMKTTL-EGLIRSVGSDG-RIHTTFNQTVASTGRLS 644

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIP++T+ G+KIR  F+       L++ADYSQIE+R++AH+++   L + +  
Sbjct: 645 STDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYRE 704

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  V +++F V I+ V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++
Sbjct: 705 GEDLHNYVGSKVFDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKTIME 764

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+  Y+ +     R++GY ET+FGRR +  E+NS     R   ERAA+NAPIQ
Sbjct: 765 SYFERFGGVQRYLAEVVEQARKSGYTETLFGRRRYLPELNSDNRVARENAERAALNAPIQ 824

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI V + L    + +++LLQ+HDELV E+   E+     I+   M+ A  
Sbjct: 825 GTAADIIKVAMIRVDRELRATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNA-- 882

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             I LRVPL+V+     +W 
Sbjct: 883 --ITLRVPLEVSAGSGRDWD 900


>gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
          Length = 875

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/981 (31%), Positives = 476/981 (48%), Gaps = 119/981 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLL  + + L  NAI GF  +L KL++  +     +HF + 
Sbjct: 3   DKLILIDGNSIAFRAFYALPLLKNQSN-LHTNAIYGFTLILDKLIKEEQ----PTHFLIA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y DYK  R K P  L  Q P +R   +A+ I   E   +EADDII T 
Sbjct: 58  FDAGKTTFRHEMYKDYKGGRQKTPSELSEQFPYIRKLAEAYQIKHYEQDMYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              A +      I++ D+DL QL S    +Y T K     +K   + + +++G  PEK++
Sbjct: 118 AKQATENKLETIIVTGDRDLTQLASDYVTIYYTKKGVTDIDKYTPQFIQEQYGFEPEKII 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GD  DNIPG+PG+G KTA  LL EYG +                E +L+  E  
Sbjct: 178 DLKGLMGDKSDNIPGVPGVGEKTALKLLHEYGTV----------------EAVLDNLEHI 221

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           +                           G +L   L   +   L+++     + DA    
Sbjct: 222 K---------------------------GKKLNENLTNHKDDALMSKQLAKINTDA---- 250

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+ +++N T           ++D + K + F  L  +    N +   Q    + ++  +Q
Sbjct: 251 PIAVNLNDT--------LLPEKDESKKIALFQELDFKQKLDNIDAETQVTEKKTIEISNQ 302

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           +      ++ I +     +  Q                 +   ++ I + I         
Sbjct: 303 FH--TFDFSTIESMAIRIRCFQD----------------NYLKNEIIGVGILVGAH---- 340

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                      +     D   +N              +NE   K  ++ K  K++  R  
Sbjct: 341 -----------TFVIPPDEIAQN-------ESFINALQNEDTKKYVYDAKETKVLFSRLD 382

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           I ++G    +ML SY+LD      D+A  AQ    Y  +       K  K  IP      
Sbjct: 383 IDIKGIEHCVMLASYLLDPALKIIDVAQSAQMQGIYYVESDEMIFGKGAKMHIP----ER 438

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + +H     N I ++  L   KL   K L +   L+ P+  V++ ME+ GI++++  L
Sbjct: 439 TNLFKHIASEVNAIHEVSALQIRKLNELKQLELLTALELPLSLVLADMEMQGIKVNRQTL 498

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +++  EI   L  L   I++ +G  FN++SPKQLG +LF  LK  S  K KT    +TA 
Sbjct: 499 QEMQQEIQSRLDELITRIHEHAGSTFNINSPKQLGVVLFEDLKLDSPKKKKTKTGYSTAV 558

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G +PII++IL +R LSK++STY + L   I    + +HT ++     TGRL+S
Sbjct: 559 DVLESLAGKHPIIEDILLYRTLSKLQSTYVEGLQKLIGDDDK-IHTRFNQVIAQTGRLSS 617

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIP++ D G+KIR+AF+   P   + +ADYSQIELR+LAHI     + + F   
Sbjct: 618 IDPNLQNIPVRLDEGRKIRKAFVPSEPNSVIFAADYSQIELRVLAHITGDKGMLEAFNQG 677

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A ++F V  E+V+  MRR AK +NF I+YGIS + L+  L I R +A  +I  
Sbjct: 678 IDIHTKTAMKVFNVEREEVTSDMRRQAKAVNFGIVYGISDYGLSQSLGITRKDAQAFIDN 737

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FP +  Y+       +Q GYV T+  RR +  +I S   ++R   ER A+N PIQG
Sbjct: 738 YLESFPDVKAYMHDIIQEAKQQGYVTTLLNRRRYIPDITSRNFNLRGFAERTAMNTPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+  ++ +++     K+LLQ+HDEL+FEVP++E+   S  + H ME A   
Sbjct: 798 SAADIIKLAMVHYNEQVKETDFKAKLLLQVHDELIFEVPKDELEAFSLFVKHVMENA--- 854

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L+VPL+V      +W E 
Sbjct: 855 -LELKVPLEVEYDSGESWYEA 874


>gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 889

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/989 (31%), Positives = 493/989 (49%), Gaps = 117/989 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  +RAF+A        +  +GL  NA+  F NML  +L    K+  
Sbjct: 3   MNKK-KLLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQED 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR  +Y DYK  R K P  L  QLP +R   +  GI + E+  +EA
Sbjct: 58  PSHILVAFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEA 117

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173
           DDII T      + G+ V ++S DKDL QL S    +Y T     K E    +H+ +  G
Sbjct: 118 DDIIGTMAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNG 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + + ++AL GD  DN PG+  +G KTA  L+QEYG++EN                +
Sbjct: 178 VTPTEFIDMKALMGDPSDNYPGVAKVGPKTAFKLIQEYGSVEN----------------L 221

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
             + +  + S+                           L   L A +   L+ +   T +
Sbjct: 222 YNHVDEMKKSK---------------------------LKENLIASKDNALLGKKLATIN 254

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           CD+    PV + ++    +G  I+        +   +F +   Q  ++   +T       
Sbjct: 255 CDS----PVEVTLDDLSYEGSNIDDLRRFYEKMNFRRFLADLAQKGELTENKT------- 303

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    +    Y  +         + +L      +F +     +   +     A+  
Sbjct: 304 --------EVKKQDYVVLSADN-----LDQLPKAAEVTFYLAMFGDNYHLADFAGFALKI 350

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             +                   S+D            S LK   E+    K   ++K   
Sbjct: 351 GGET----------------FVSRDVFLLQE------SPLKGMLEDSAVQKNVFDLKRTT 388

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SI 528
             L+R GI       D++L SY++D+ ++S+D+  + Q +  Y  K   E+    K+  I
Sbjct: 389 YGLYRLGIKAESLTFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDLEVYGKGKNAKI 448

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D+    H    +  I  L   L  +L   +   +Y+ ++ P   V+++ME+ GI
Sbjct: 449 PAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGI 505

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++    LK++  + +  L  LEE IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG
Sbjct: 506 KVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNSPKQLGVILFEKLGLPVIKKTKTG 565

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ ++       +P++ +ILE+RQ+SKI+STY   L + I+KR  R+HT Y    T
Sbjct: 566 Y--STSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDKRDGRIHTRYLQTLT 623

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQIELR+LAH++    +
Sbjct: 624 ATGRLSSVDPNLQNIPARTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNM 683

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+   DIH   A +IF ++ +++V+   RR AK +NF I+YGIS + L+  L I R 
Sbjct: 684 QEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRK 743

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I  YF ++PGI  Y+++     R+ GY ETI  RR +  +I++   ++R+  ER 
Sbjct: 744 QAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERT 803

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP +E+ T  +I+  
Sbjct: 804 AINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPS 863

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    + L VPL  +    ++W E 
Sbjct: 864 VMQAA----VKLDVPLVADAGWGHDWYEA 888


>gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129]
 gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae]
          Length = 899

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/982 (28%), Positives = 463/982 (47%), Gaps = 105/982 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
              N L L+DG S  +RAFYA P  +     G   NA+ GF +ML  LL   +     +H
Sbjct: 13  SNANRLMLIDGHSMAFRAFYALPAENFSTSGGQATNAVYGFLSMLSSLLVEEK----PTH 68

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR E++P+YKA R   P     Q+ +++   +  GI  +E + FEADDI
Sbjct: 69  VAVAFDVGRQTFRTEMFPEYKAQREAAPPEFKGQVEIIKEVLETLGITTLEKENFEADDI 128

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    A   GF   I++ D+D  QLV+ +T +   ++      +   E V +K+G+ P
Sbjct: 129 IATLATAAGPLGFDTYIVTGDRDSFQLVNESTTVLYPMRGVSVLHRFTPEAVEEKYGLTP 188

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+P IPG+G KTA   + +YGNL+++L +A  IK  K   +  E 
Sbjct: 189 VQYPDFAALRGDPSDNLPNIPGVGEKTATKWIVQYGNLDSLLAHADEIKG-KAGNSFRER 247

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  R++R L                                    ++I  +   Y  D 
Sbjct: 248 LDQVRMNRTLT-----------------------------------EMIKDLELPYAPDQ 272

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +P       ++   +   + +            ++S+                E  +
Sbjct: 273 LERKPADASAIASKFDELEFGSNLRDRVIHAVDAQGNVSE----------------ESEE 316

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +  I+++     + T+  Q     +   GS +      + DA  +  +         
Sbjct: 317 YKPEVVIDHEKLASWLATRAGQSLALYVRGHGSPA------SGDAESAAIV--------- 361

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
             D  F                      L  +      ++  ++   K  H  K    +L
Sbjct: 362 --DKQFHAVAF-------------DFGDLDADDDQAFAQWIASDS-PKYLHEAKAVFHML 405

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G ++ G   D  +  Y+L  G+ ++D+  + Q+ L       L    S      + D
Sbjct: 406 AGRGYTLNGIEHDTAIAGYLLRPGQRTYDLKDVYQRHLQRQ----LGGGSSESGQLSLLD 461

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   +  ++++  IL+L   L  +L       +Y  ++ P++ V+++ME TGI +D   L
Sbjct: 462 APDAQELVDSAVAILELSKSLTAQLQAIDAYELYREMELPLVGVLARMEATGICVDVATL 521

Query: 596 KQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           ++      + +   E    +L+G E  NLSSPKQL  +LF  L  P   KTKTG      
Sbjct: 522 REQRDIFVEQVKEEESAARELAGDETLNLSSPKQLQVVLFDTLGLPKTKKTKTGYSTAAK 581

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +         +P + ++L  R+  K+K+T  D L   +     R+HT ++     TGRL+
Sbjct: 582 EIESLAVKNPHPFLDHLLAHREFQKMKTTL-DGLIKAVGDDG-RIHTTFNQTVASTGRLS 639

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP++T  G+KIR AF+     K L++ADYSQIE+R++AH+++   L + ++ 
Sbjct: 640 STEPNLQNIPVRTPAGRKIRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQT 699

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  V +++F V +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++
Sbjct: 700 GEDLHNFVGSKVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLNIPAGEAKVIME 759

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+  Y+++     R++G+  T+FGRR +  E++S     R   ERAA+NAPIQ
Sbjct: 760 SYFERFGGVKRYLDQVVEQARKDGFTSTLFGRRRYLPELSSDNRVARENAERAALNAPIQ 819

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM+ V   L      +++LLQ+HDELV EV   E     Q++   M+ A  
Sbjct: 820 GTAADIIKIAMLRVDARLTAENCQSRVLLQVHDELVLEVASGEQEKVQQLVEEEMDAA-- 877

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             I+LRVPL+V+  V  NW+E 
Sbjct: 878 --ISLRVPLEVSAGVGTNWEEA 897


>gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
 gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/990 (29%), Positives = 476/990 (48%), Gaps = 109/990 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S + RAFY          G P NAI GF N+L KLL +S  ++      V 
Sbjct: 2   KKLMVLDGNSLVNRAFYGVSQNLTTRSGQPTNAIFGFLNILGKLLDDSNPDA----LCVT 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y  YKA R  +P+ L  Q+P+++    A  IP  E+ G+EADD++ T 
Sbjct: 58  FDRKAPTFRHLAYDGYKATRKGMPDELASQMPILKDVLSAMNIPIYEMDGWEADDLMGTI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTC------LYDTVKEEKIDIEHVIKKWGIPPEK 178
                  G+   +++ DKD +QLV+  T              + +  E   +++G  P  
Sbjct: 118 AAKDTAAGWDTIVVTGDKDSLQLVTDHTTVKLVSTRMGRTTTKDMTPEVFREEYGFDPIH 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+AL GD+ DNIPG+ G+G KTA  L+  YG+++ +                     
Sbjct: 178 IIDLKALMGDASDNIPGVKGVGEKTAMALVGRYGSIDALYEA------------------ 219

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                             +P   +       P +I  L+  E    ++    T  CDA  
Sbjct: 220 ------------------MPTPEMAPGTPAKPGVIKKLQEGEEMARMSYDLATIRCDAP- 260

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ--TSKINSEQTPQKLFLERLQ 356
                LD +  +N    ++ +      ++  +F+ L D+   +    E  PQ+  +    
Sbjct: 261 -----LDFDPEQNLRKEVDNDRLYQLFLEL-EFAKLIDKYHLTAPQGEGAPQEGKIAE-- 312

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     +   + +    Q+ +         +  +    +DA     + ++      
Sbjct: 313 -------CTCTSEVVADAARAQELLALWRQADHVAV-LALPGLDA-----VCVSF----- 354

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                            H +     +     ++L  L          K+ H  K  +  L
Sbjct: 355 ----------EPSPTEAHGALLFANRLENYNQVLQALFA----PDIQKVVHGAKELEKEL 400

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKI 533
              GI  +G   D  L +Y+L     S+D+  +    ++Y  +E  K+++   P   D +
Sbjct: 401 MDQGIEPQGIRFDTELAAYLLSPTDGSYDLEKLG---ITYYNQEFAKAKEYLTPGAFDSL 457

Query: 534 -SDSQVQEHA------IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            S     + A      + +  +I  L+  L  +L   KL  +Y  ++ P+  V+++ME +
Sbjct: 458 FSLDSEGQSAGPMGAFLSHCALIDALYETLSQRLEELKLTQLYGEIELPLCPVLAEMERS 517

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ +D+  L      +++ +   +  IY+L+GE+FN++S +QLG ILF KL  P   KTK
Sbjct: 518 GVLVDRKALAAFGEALAQGIEKDQALIYELAGEEFNINSTQQLGKILFDKLGLPPVKKTK 577

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T A+ LE++  G +PII+ IL++RQL+K+KSTYAD L   I    +    F +  
Sbjct: 578 TG-YSTNAEVLEKLR-GKHPIIEAILDYRQLTKLKSTYADGLGKVIAPDGRIHTCFQNT- 634

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S EPNLQNIPI+T LG ++R  F++ P K L+ ADYSQIELR+LAH+A    
Sbjct: 635 VTATGRLSSTEPNLQNIPIRTQLGAQLREMFVAAPGKVLVDADYSQIELRLLAHMAGDQA 694

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F +  DIH + A+++FGV  ++V+PQMRR AK +NF I+YGISPF L+  + +   
Sbjct: 695 MIEGFHSGADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGIVYGISPFSLSQDIGVSVQ 754

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A +Y+ +YF  + G+  Y++      +Q+GYV T+FGRR    E+ S   + R+  ER 
Sbjct: 755 QAKEYMDKYFAHYSGVRAYMDGVVEQGKQDGYVATLFGRRRWLPELKSSNFNTRSFGERV 814

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQG+AADI + AMI V   L    L  +++LQ+HDEL+ E PE E  T  +++  
Sbjct: 815 ALNMPIQGTAADIIKLAMIRVRDRLLREGLEGRLVLQVHDELIVECPEAEAETVCRLVKE 874

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            ME  C     L +PL         W   +
Sbjct: 875 EMEGVC----QLSIPLLAETHAGTTWASAH 900


>gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501]
          Length = 881

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/990 (32%), Positives = 487/990 (49%), Gaps = 125/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++Q  +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K  F V ++S D+DL QL S    +  TVK     E    EHV +K+ 
Sbjct: 116 DDIIGTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I               
Sbjct: 176 GLIPKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY-------------- 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E+ +  + S+                  + E+    +  +FL          ++AT  
Sbjct: 222 --EHIDEMKQSK------------------MKENLINDKEQAFLSK--------KLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV + I++ + +G  ++  +      K   F+    + + +  E     +  
Sbjct: 253 ----NTSAPVEVSIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILF 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E + +  +     D                        +  +     +    + + +A  
Sbjct: 306 EVVHEFKEEMFTTD-----------------------MALYVEMMGNNYHTEEIVGVAWG 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T         K   +  DLSV  +Q                  +  +   LK  ++ K  
Sbjct: 343 TE--------KKIYVTNDLSVFENQ--------------AFHSWITDPTRLKKVYDAKRT 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +        K  K  
Sbjct: 381 YVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKG 440

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P ++        H       I  L   L  +L  +    ++ +++ P+  ++++MEI+G
Sbjct: 441 LPEEE---ELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISG 497

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 498 IKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 557

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    
Sbjct: 558 GY--STAVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGK-VHTRYVQTL 614

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ D G+KIR+AF+       + S+DYSQIELR+LAHI+    
Sbjct: 615 TQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEH 674

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 675 LKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISR 734

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +INS   +IR+  ER
Sbjct: 735 KAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAER 794

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVPE+E+ +  +++ 
Sbjct: 795 TAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVK 854

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME+A    ++L VPL  +      W E 
Sbjct: 855 EVMEQA----VSLHVPLITDSSWGKTWYEA 880


>gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963]
          Length = 915

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/976 (28%), Positives = 461/976 (47%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  + + H G   NA+ GF +ML  LL++ +     +H A  F
Sbjct: 28  LMLLDGHSLAFRAFYALPAENFKTHSGQATNAVYGFTSMLINLLRDEQ----PTHLAAAF 83

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR +++P+YKA R K P+    Q+ + +    A GIP +  +GFEADD+IAT T
Sbjct: 84  DVSRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVLGALGIPVMAEEGFEADDVIATLT 143

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE  G+ V +++ D+D +QLV+    +    K      +     V +K+ + P +   
Sbjct: 144 TQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGASELTRFTPTAVEEKYSLSPAQYPD 203

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA   ++EYG+L+ ++ N  +++  K  +++ E      
Sbjct: 204 FAALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLVDNVDKVRG-KVGDSLRENLANVL 262

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           L+R+L  +       +PL                                         P
Sbjct: 263 LNRQLTEMVR----DVPL--------------------------------------PYTP 280

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L +   + + I    +      ++   F++LS    +           L         
Sbjct: 281 EQLVLAPWDREKIHALFDDLEFKVLRDRLFATLSSSEPEAEEGFEVSDDALA-------- 332

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                          +  W+      G      +  T   F     A+AI+  D +    
Sbjct: 333 ------------PGAVAAWLDAHARTGERHGVTVLGTRTPFAGDVTALAIAASDGECAY- 379

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                                +T T E  + L  +  +    K  H  K+    L   G 
Sbjct: 380 ------------------IAASTATPEDEAALGDWLADASQPKALHEAKWAIHALRGRGW 421

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS--DSQV 538
           ++ G   D  L +Y++  G+ S ++  ++ ++L    +     ++    +D     D++ 
Sbjct: 422 TLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAEA 481

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            E A+ ++  +L L   L  +L   +   +   ++ P+   ++Q+E TGI +D   L  +
Sbjct: 482 AETAMLSAQAVLDLAAALGTELESIESKSLLSDMELPLTIELAQIEATGIVVDSAHLHDL 541

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            +  +  +     + Y++  ++ NL SPKQL  +LF +L  P   KTKTG          
Sbjct: 542 QSRFASQVADAANSAYEVIDKQINLGSPKQLQVVLFEELDMPKTKKTKTGYSTDAEALQG 601

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
             +   +P ++++L  R  +++K T  D L   + +   R+HT ++     TGRL+S +P
Sbjct: 602 LFDKTGHPFLEHLLAHRDATRMKVT-VDGLLKAVAEDG-RIHTTFNQTVAATGRLSSTDP 659

Query: 719 NLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ D G++IR  F+       L++ADYSQIE+RI+AH++    L + F    D+
Sbjct: 660 NLQNIPVRNDAGREIRDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDL 719

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H  V +  FGV IE+V+P++RR  K +++ + YG+S + LA+QL+I   EA   +  YF 
Sbjct: 720 HSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFA 779

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF G+ +Y+       R++GY  T++GRR +  ++NS     R + ERAA+NAPIQG+AA
Sbjct: 780 RFGGVRDYLHAVVEQARKDGYTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAA 839

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI+V K+L D  L ++MLLQ+HDELV EV   E+   + ++   M  A    I 
Sbjct: 840 DIIKVAMINVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATA----IE 895

Query: 958 LRVPLKVNIKVSNNWQ 973
           L VPL V++    +W 
Sbjct: 896 LSVPLDVSVGTGRSWD 911


>gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
 gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
          Length = 873

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/974 (30%), Positives = 478/974 (49%), Gaps = 110/974 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    +    + AV 
Sbjct: 2   KKLMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEINPD----YIAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + 
Sbjct: 57  FDKGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           +        AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++
Sbjct: 117 SKKFGAPDMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GDS DNIPG+PG+G KTA  L+ EYGNLE++  +   I  KK +E ++E     
Sbjct: 177 EMKALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVEN---- 232

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              ++L                                      ++R   T   D     
Sbjct: 233 ---KELA------------------------------------FLSRELATIKTDMELSY 253

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V   +       +            +T  F+ L+ + +++   +       E       
Sbjct: 254 KVEDFVQNFHASEV--------QPLFETLGFTKLTPRIAQVMGCE-------EVALGDPG 298

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     + +  D +          + +  +I D    F          T+     +
Sbjct: 299 SLFAPQEEISLNDLADAKSLTADFYKDKTVAVHVILDGKTPFR---------TVTNAYLS 349

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +        D     +     K  +T +    ++ F  +        N      V     
Sbjct: 350 NGDTIVKTDDTKAVLAVLQGAKAIVTTQTKEIIEAFGADVPAEISLFNADKTARV----- 404

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  D+ L++Y+LD  R+++    + +++              S+P   I++  V  
Sbjct: 405 ------HDMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIANGSVDV 442

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             +     +L +  +       E+L  +YE ++ P+I  +  ME  GI ID + L + +A
Sbjct: 443 ECVSMVKALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTA 502

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              + L  ++E IY+L+GE FN++SPKQLG ILF KL  P   KTKTG   +T  ++  +
Sbjct: 503 RFKEELTQVQEEIYELAGETFNINSPKQLGVILFEKLNLPIIKKTKTGY--STDAEVLDM 560

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++PI++ IL +R ++K+ STY + L   IN +T R+HT ++   T TGRL+S +PNL
Sbjct: 561 LRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNL 620

Query: 721 QNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F        L+SADYSQIELRILAH++    L + F    DIHR
Sbjct: 621 QNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHR 680

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G + ++V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+
Sbjct: 681 FTAAEVLGKSQDEVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRY 740

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI
Sbjct: 741 PKVKEYMDRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADI 800

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM  V + LE+    +++LLQ+HDELV EV   E+    +++  +M+      + L+
Sbjct: 801 IKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSV----VELQ 856

Query: 960 VPLKVNIKVSNNWQ 973
           VPL V++  + NW 
Sbjct: 857 VPLIVDVHHAENWA 870


>gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/976 (31%), Positives = 501/976 (51%), Gaps = 115/976 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++D +S + RAFYA P L+   DG+  NA+ GF NML+K+ +  + +    +    F
Sbjct: 3   RLLILDSNSLLNRAFYAIPELTT-SDGIHTNAVYGFTNMLFKMKEELKPD----YIVAAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++ Y DYKA R K+P  L  Q P+V+       I   EI GFEADDII +  
Sbjct: 58  DRKGPTFRHKEYEDYKAGRKKMPPELAEQFPIVKELLDLLSISKYEIDGFEADDIIGSLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             AEK    V +++ D+D +QL S    +  T K        D +  ++++G+ P + + 
Sbjct: 118 KYAEKNNIEVYVVTGDRDALQLASDNINVVITKKGVTETAVYDHKTFVEEFGVTPTQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           ++ L GD  DNIPG+PG+G KTA  L+Q YG++E +L N   I  KK +EN+        
Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAYKLIQTYGSVEEVLNNIDNISGKKLKENL-------- 229

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                             E+   +     +L + +  +     ++ + +    D   +  
Sbjct: 230 ------------------ENFREQAIFSKKLATIITEVPIEFDLDEIKSQESYDKEGLRK 271

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           +   +                       Q  S+ D+  K + +               + 
Sbjct: 272 LFFKL-----------------------QMKSMFDKLPKSDKDL--------------EV 294

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              + +   I N +++    + L+ +   ++ +I ++      +   I +S  D+    +
Sbjct: 295 TEESLNLITIDNLEELLNLSKSLDKVCYITYDVI-NSTKYSEIELSKIYLSNEDKVYLIN 353

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           FK                   +    E    LK   ENE   KI H+ K    VL++  I
Sbjct: 354 FKNIY----------------SVNKDEANLALKAIMENEELTKIIHDGKSLVTVLNKLDI 397

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           S++ F  D  + +Y++DS RSS+D+ ++  ++L    ++I           +I + +V  
Sbjct: 398 SIKTFEFDTAIAAYLIDSARSSYDLLTLINEYLG---EDITGEG-------EILEGKVN- 446

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                   +  ++ LL+ K+  EK+  +Y +++ P+I V+S ME  G  I++++L  ++ 
Sbjct: 447 ------FKLRDIYELLKKKIEEEKMEELYYKVEHPLIFVLSSMEALGFNINKNMLDDLAI 500

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +  + +   E+ IYDL+ E+FN++SPKQLG ILF KL  P   KTKTG + T A+ LE++
Sbjct: 501 KFKEEITRTEKEIYDLAEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEKL 559

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               + II  I  +RQ++K+ STY + L N I+     +H+ ++   T TGRL+S EPNL
Sbjct: 560 Q-DKHEIIPKITYYRQITKLNSTYVEGLKNVIDSDGH-IHSSFNQTVTTTGRLSSTEPNL 617

Query: 721 QNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIPIK ++G++IR+ FI       L+S DYSQIELR+LAH++    +   F++  DIH 
Sbjct: 618 QNIPIKYEMGREIRKVFIPDEEGDILLSCDYSQIELRVLAHMSNDENMIDAFKHHSDIHT 677

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+E+F V IE V+  MR  AK +NF I+YGIS F L+  L I + EA++Y++ YF R+
Sbjct: 678 KTASEVFKVPIEDVTSLMRSRAKAVNFGIVYGISDFSLSQDLHITKKEASEYMEIYFERY 737

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P I  Y++      ++NGYV TI  RR    EI S    ++ + ER A+NAPIQGSAADI
Sbjct: 738 PKIKGYLDSVMQEAKENGYVLTILNRRRFIPEIKSSNRIVKALGERLAMNAPIQGSAADI 797

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++V+  L++ +L + M+LQ+HDEL+  V E E+    QI+   MEK     ++++
Sbjct: 798 IKLAMVNVYNKLKEKELKSTMILQVHDELILNVKENELEEVKQIVKDEMEKV----LDMK 853

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL+V+  +   W E 
Sbjct: 854 VPLEVDTNMGKTWYEA 869


>gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1]
 gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1]
          Length = 903

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/992 (31%), Positives = 506/992 (51%), Gaps = 118/992 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   L L+DG+S  +RAFYA          H GL  NA+  F N   ++++    +  
Sbjct: 12  MTK--TLLLIDGNSLAFRAFYAMYNQLDRMVAHTGLHTNALVAFNNFFDQVVEKMNPD-- 67

Query: 58  ASHFAVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
             +  V +D      TFR +I+ DYK +R   P  L  Q P +R      GI + E+ GF
Sbjct: 68  --YALVAWDAGKGATTFRAKIFDDYKGDRQTTPPELSEQFPYLRKMVDLHGIHSYELPGF 125

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADDII TY+ +AEK G   TII+ D+DL QLV+    +  T K     ++   + + +K
Sbjct: 126 EADDIIGTYSKLAEKAGLKTTIITGDRDLTQLVTDNVSVNVTKKGVTELDRYTPKFLAEK 185

Query: 172 WG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           WG I P +++ +++LTGD+ D+ PG+  +G KTA  LL E+G+L+ I  +   +K  K +
Sbjct: 186 WGGITPSQVIEMKSLTGDTSDHYPGVTKVGLKTAIKLLNEFGSLDGIYQHIDSMKTSKLK 245

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           EN+L   E+A  + +L  +RTD P+                       LE  +LIN+   
Sbjct: 246 ENLLNDKESAYRAHELATIRTDAPV----------------------ELEMKELINQ--- 280

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                                        I+    I   +      Q +KI+S Q    +
Sbjct: 281 ----------------------------PINFQELIPFYEELDFKVQLAKIHSMQKAGMV 312

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG-SASFKIITDTMDAFHSKPIAI 409
             ++ ++ +           +  T+     +  L  I    +    TD+ +   +K   I
Sbjct: 313 GQDQEEEKN-----------VQVTELKAANLDHLSEIKNYLTVYFQTDSDNYHTAK---I 358

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           +   +  ++D  F             S+D    N+      S ++K F+     K   N 
Sbjct: 359 SAFVVGNENDGYFA------------SRDLELLNS------SVVRKLFK-GDLPKYVFNA 399

Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRK 525
           K   ++L+R G+ +   + D +L+SY+LD+  + + +A++A ++   L    +      K
Sbjct: 400 KELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEVYGSGVK 459

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             IP +   +  +  H    ++ I +L      KL   +   +Y +++ P+  V++ MEI
Sbjct: 460 FKIPEN---NETLFSHMANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEI 516

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI++DQ  LK++  E  + +  LE+ IY+ +G++FN++SPKQL D+LF  +K P   KT
Sbjct: 517 NGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQEFNINSPKQLADLLFAHMKIPPIKKT 576

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG   +TA ++ +      P +  IL++RQL+K+ STY   L   +N    ++HT Y  
Sbjct: 577 KTGY--STAANVLEELAEKYPFVGLILQYRQLAKLNSTYVKGLLEVVNPDDSKIHTRYLQ 634

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S++PN+QNIP + + G++IR+AF+      ++  +DYSQIELR+LAH+   
Sbjct: 635 TLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGD 694

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             L + FE+  DIH   A  IFG++ ++ ++   RR AK +NF I+YGIS F LA +L  
Sbjct: 695 ENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGT 754

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R E  + I+ YFH FP +  +I+       + GYVETI  RR +  +I+S   ++R+  
Sbjct: 755 SRIEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFA 814

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A N PIQGSAADI + AMI + ++L+D+ L  KMLLQ+HDEL+FE P++EI    ++
Sbjct: 815 ERTATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEEL 874

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +   M+ A    + L VPL+V      NW +E
Sbjct: 875 VPKVMDSA----VKLNVPLRVEAHHGVNWYDE 902


>gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
 gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
          Length = 881

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/990 (31%), Positives = 487/990 (49%), Gaps = 125/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++Q  +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y +YK  R K P     Q+  +R      G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMTYIRDLLTGLGVQYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ 
Sbjct: 116 DDIIGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I               
Sbjct: 176 GLTPKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY-------------- 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E+ +  + S+                  + E+    +  +FL          ++AT  
Sbjct: 222 --EHIDEMKQSK------------------MKENLINDKEQAFLSK--------KLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV + I++ + +G  ++  +      K   F+    + + +  E     +  
Sbjct: 253 ----NTSAPVDVSIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILF 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E + +  +     D                        +  +     +    + + +A  
Sbjct: 306 EVVHEFKEEMFTTD-----------------------MALYVEMMGDNYHTEEIVGVAWG 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T         K   +  DLSV  ++                  +  +   LK  ++ K  
Sbjct: 343 TE--------KKIYVTNDLSVFENR--------------AFHSWITDPTRLKKVYDAKRT 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +        K  K  
Sbjct: 381 YVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKG 440

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P ++        H       I  L   L  +L  +    ++ +++ P+  ++++MEI+G
Sbjct: 441 LPEEE---ELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISG 497

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 498 IKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 557

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    
Sbjct: 558 GY--STAVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGK-VHTRYVQTL 614

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ D G+KIR+AF+       + S+DYSQIELR+LAHI+    
Sbjct: 615 TQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEH 674

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 675 LKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISR 734

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +INS   +IR+  ER
Sbjct: 735 KAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAER 794

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVPE+E+ +  +++ 
Sbjct: 795 TAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVK 854

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME+A    ++L VPL  +      W E 
Sbjct: 855 EVMEQA----VSLHVPLITDSSWGKTWYEA 880


>gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9]
          Length = 960

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/987 (27%), Positives = 470/987 (47%), Gaps = 52/987 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L ++DG S  +RAFYA P  +    DG   NA+ GF  ML +++ + + +       
Sbjct: 9   RGTLLVIDGHSLAFRAFYALPAENFSAKDGQATNAVYGFFTMLSQVIASQKPDL----LG 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRN++   YK  R   PE L+ Q+PL++   +AFG+  +  QG+E DD+IA
Sbjct: 65  VAFDVKGGTFRNKMLTQYKGTREAAPEELISQIPLIQDMLEAFGVTYVTKQGYEGDDVIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEHVIKKWGIPPEK 178
           T   + E   +   ++S D+D  QL+     +    Y   + + +  + V  K+ + P +
Sbjct: 125 TLATMGEHADYRTYVLSGDRDAFQLIDDDITVLYPGYHFKELKAMTPQAVEDKYHVTPRQ 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + +YG L+ ++ +A  IK KK  + + E  E
Sbjct: 185 YPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDGVIEHADEIKGKK-GDALRESIE 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             RL+RK+  L  D+ + + +  L     +  +       L F  ++ +++  T++    
Sbjct: 244 QIRLNRKVNALVRDLDLGVDIADLTFGKVDPAKAEELFNQLNFGARIRSKLLKTFNAGDP 303

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +PV    +  E      E +     T +     S+  Q   ++    P  L     Q 
Sbjct: 304 G-QPVAKKASDAERFEFEGEFDDGSFDTPE-----SVRVQEPVVDEIDAPASLEAWAQQH 357

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                  + S T +    +     Q+                        A+  S     
Sbjct: 358 CPIASGKSISSTTLDVVGEYDAQSQQCVE---------------------AVEGSWSLFA 396

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             +     +    L++     +   +   ++    L++  +        H  K    +L 
Sbjct: 397 SGSPKPGRSSISGLALMADGHAVVVDPHDEQYHMALQRILDTYAATLSVHGYKEHLHMLG 456

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD- 535
              + +     D  L  Y++D       +   A  +L    +E+ ++ + ++ I    + 
Sbjct: 457 AVNLRLPMVLFDTNLAGYLIDPDFQGGSLQDCADHFLHRHAEEVTETEQGTLDIGMDDER 516

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++     + N+ ++  L   L  +L       +   ++ P    +  ME TG  +D+  L
Sbjct: 517 AERDRKVVRNAAIVSLLARTLARQLEQRCQYSLLRDIELPTSVALFHMEHTGASVDRARL 576

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++    +     +E+  Y+ +G + NL SPKQLG +LF ++      KTK G + T A+
Sbjct: 577 DELLEMFTDESNRMEQICYEAAGHEVNLQSPKQLGVVLFEEMGLNPTKKTKRGSYSTNAK 636

Query: 656 DLEQINCG------DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            L  +          N  +  +L  R+++K++     +L + IN R  R+HT ++     
Sbjct: 637 ALTTLYATSEEGSRPNEFLGALLRHREVNKLR-QIVQTLIDAINPRDGRIHTTFTQTVAA 695

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PNLQNIP +   G+ IR AF+       L+SADYSQ+ELRI+A ++    L 
Sbjct: 696 TGRLSSVDPNLQNIPNRNATGRDIRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALI 755

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F++  D HR VA+ ++G+ +++V+P  R H K +++ + YG+S + L+ QL IP  EA
Sbjct: 756 KAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYGLSTYGLSQQLGIPSKEA 815

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           A    RYF  F  +H+Y+E   +  R  GY +T+FGRR ++  + S     R+  ER A+
Sbjct: 816 AALRSRYFQTFGKVHDYLESLVSNARNTGYTQTMFGRRRYFPALTSANRVARDAAERGAL 875

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQG+AADI + AMI V ++L D  L ++++LQIHDELV E+   E    ++++  +M
Sbjct: 876 NAPIQGTAADIMKIAMIRVDRALRDGNLNSRIVLQIHDELVVELAPGEEKRVTELVRDAM 935

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E A    +N+ VPL V+  V ++WQ+ 
Sbjct: 936 EHA----VNIAVPLDVSTGVGSDWQQA 958


>gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
 gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
          Length = 907

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/986 (30%), Positives = 500/986 (50%), Gaps = 109/986 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +++  L L DGSS  +R+F+A   +      +G+  NA+  F  M+  +L+  +     +
Sbjct: 18  KEKKKLVLFDGSSLAFRSFFAIQNIDSFVNKNGMHTNALFAFHEMMNNILEKEQ----PT 73

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V +D    TFRNE + +YK  R   P     Q+P   +   AFG+   ++  +EADD
Sbjct: 74  HALVAWDAGKTTFRNEFFDEYKGGRQSTPSEFREQMPFFNVLLDAFGVAHYDLTNYEADD 133

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP 175
           II T       E F V +IS DKDL QL      +  T K            +++  GI 
Sbjct: 134 IIGTLAAKVAPEEFDVVVISGDKDLTQLARDNVRVDITKKGVSELASYTPASIMEDMGIT 193

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE+++ ++ L GDS DN PG+ GIG KTA  LL EYG++E +                 E
Sbjct: 194 PEQIIDMKGLMGDSSDNYPGVSGIGEKTALKLLHEYGSMEAMY----------------E 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S++              E+LI E  N               ++++     + D
Sbjct: 238 QIDDMKKSKR-------------KENLINEKDNA--------------ILSKKLARIELD 270

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    PV ++++    KG  +E  +     +  + F S   + S      T         
Sbjct: 271 A----PVKIELSDLSYKGKQLEPLMSFYKDMNFNGFMSRLLENSDQADLLTEDW------ 320

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +YT + + +D+                    T+D F S+P A   +   
Sbjct: 321 --------EEVTYTHVASAEDL--------------------TVDHFPSEPAADGYAIYL 352

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +    ++    +      + S+  TG   L +  L   K +  ++   K+  + K  K++
Sbjct: 353 ENLSKNYHDSEVVAVAWTNGSEIFTGDARLLQADL--FKAWLSDDQVTKVVFDAKRTKVM 410

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPI 530
           L   GI   G  +D+++ SY+L +  +S+D+A +A+++    LSY      K  K  +P 
Sbjct: 411 LDYLGIDFAGVVDDVLIGSYLLHARDNSNDLAEVAREFDMDDLSYDEAIYGKGAKRGVPE 470

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +      + EH     ++I +L   +RP+L   ++  +Y++++ P+  V++ +EI GI +
Sbjct: 471 EA---ETMYEHIARKVHIIARLQETIRPQLEANQMDDLYQKIELPLALVLANLEILGISV 527

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D+  L  + AE  + +  LE +I+  +G +FN++SPKQLG ILF ++  P   KTKTG  
Sbjct: 528 DKQQLVTMQAEFKEIIAGLEADIWKEAGHEFNVNSPKQLGVILFEEMGLPVIKKTKTGY- 586

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TAQD+ +   G  PII  IL +RQL+K++STY + L   I++  + +H+ +    T T
Sbjct: 587 -STAQDVLEKLAGQAPIIDLILNYRQLNKLQSTYVEGLQEFIHEDGK-IHSRFQQTLTST 644

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S +PNLQNIPI+++ G+ IR+AF+       + S+DYSQIELR+LAHI+    + +
Sbjct: 645 GRLSSADPNLQNIPIRSEEGRSIRKAFVPSHEDWVIFSSDYSQIELRVLAHISGDKHMQE 704

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F N  DIH   A +++ V  E+V+  MRR+AK +NF I+YGIS + L+  L I R EA 
Sbjct: 705 AFNNHEDIHTSTAMKVYNVPKEEVTSNMRRNAKAVNFGIVYGISDYGLSQNLNISRPEAK 764

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  Y   +PG+  Y++      +++GYVET+F RR +  ++ +   ++R+  ER A+N
Sbjct: 765 NFIDTYLENYPGVQAYMKDVVEKAKEDGYVETLFNRRRYLPDLKAKNFNVRSFAERNAMN 824

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AADI + AM+ + ++L++HKL   +LLQIHDELVFEVP++EI T  +++   M 
Sbjct: 825 TPIQGTAADIIKIAMVKMDEALKEHKLKANLLLQIHDELVFEVPKDEIETLEKLVTEIMG 884

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A      L VPL++       W E 
Sbjct: 885 SAA----QLDVPLEIESNYGATWYEA 906


>gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15]
 gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15]
          Length = 881

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/990 (32%), Positives = 487/990 (49%), Gaps = 125/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++Q  +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K  F V ++S D+DL QL S    +  TVK     E    EHV +K+ 
Sbjct: 116 DDIIGTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I               
Sbjct: 176 GLIPKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY-------------- 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E+ +  + S+                  + E+    +  +FL          ++AT  
Sbjct: 222 --EHIDEMKQSK------------------MKENLINDKEQAFLSK--------KLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV + I++ + +G  ++  +      K   F+    + + +  E     +  
Sbjct: 253 ----NTSAPVEVSIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILF 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E + +  +     D                        +  +     +    + + +A  
Sbjct: 306 EVVHEFKEEMFTTD-----------------------MALYVEMMGDNYHTEEIVGVAWG 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T         K   +  DLSV  +Q                  +  +   LK  ++ K  
Sbjct: 343 TE--------KKIYVTNDLSVFENQ--------------AFHSWITDPTRLKKVYDAKRT 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +        K  K  
Sbjct: 381 YVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKG 440

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P ++        H       I  L   L  +L  +    ++ +++ P+  ++++MEI+G
Sbjct: 441 LPEEE---ELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISG 497

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 498 IKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 557

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    
Sbjct: 558 GY--STAVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGK-VHTRYVQTL 614

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ D G+KIR+AF+       + S+DYSQIELR+LAHI+    
Sbjct: 615 TQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEH 674

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 675 LKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISR 734

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +INS   +IR+  ER
Sbjct: 735 KAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAER 794

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVPE+E+ +  +++ 
Sbjct: 795 TAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVK 854

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME+A    ++L VPL  +      W E 
Sbjct: 855 KVMEQA----VSLHVPLITDSSWGKTWYEA 880


>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 887

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/989 (31%), Positives = 494/989 (49%), Gaps = 117/989 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  +RAF+A        +  +GL  NA+  F NML  +L    K+  
Sbjct: 1   MNKK-KLLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQED 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR  +Y DYK  R K P  L  QLP +R   +  GI + E+  +EA
Sbjct: 56  PSHILVAFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173
           DDII T      + G+ V ++S DKDL QL S    +Y T     K E    +H+ +  G
Sbjct: 116 DDIIGTMAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + + ++AL GD  DN PG+  +G KTA+ L+QEYG++E                N+
Sbjct: 176 VTPTEFIDMKALMGDPSDNYPGVAKVGPKTASKLIQEYGSVE----------------NL 219

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
             + +  + S+                           L   L A +   L+ +   T +
Sbjct: 220 YNHVDEMKKSK---------------------------LKENLIASKDNALLGKKLATIN 252

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           CD+    PV + ++    +G  I+        +   +F +   Q  ++   +T       
Sbjct: 253 CDS----PVEVTLDDLSYEGSNIDDLRRFYEKMNFRRFLADLTQKGELTENKT------- 301

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    +    Y  +         + +L      +F +     +   +     A+  
Sbjct: 302 --------EVKKQDYVVLSADN-----LDQLPKAAEVTFYLAMFGDNYHLADFAGFALKI 348

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             +                   S+D            S LK   E+    K   ++K   
Sbjct: 349 GGET----------------FVSRDVFLLQE------SPLKGMLEDSAVQKNVFDLKRTT 386

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SI 528
             L+R GI       D++L SY++D+ ++S+D+  + Q +  +  K   E+    K+  I
Sbjct: 387 YGLYRLGIKAESLSFDLLLASYLVDNEKNSNDLGELVQGYDYFDLKTDLEVYGKGKNAKI 446

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D+    H    +  I  L   L  +L   +   +Y+ ++ P   V+++ME+ GI
Sbjct: 447 PAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGI 503

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++    LK++  + +  L  LEE IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG
Sbjct: 504 KVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNSPKQLGVILFEKLGLPVIKKTKTG 563

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ ++       +P++ +ILE+RQ+SKI+STY   L + I++R  R+HT Y    T
Sbjct: 564 Y--STSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQTLT 621

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQIELR+LAH++    +
Sbjct: 622 ATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNM 681

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+   DIH   A +IF ++ +++V+   RR AK +NF I+YGIS + L+  L I R 
Sbjct: 682 QEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRK 741

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I  YF ++PGI  Y+++     R+ GY ETI  RR +  +I++   ++R+  ER 
Sbjct: 742 QAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERT 801

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP +E+ T  +I+  
Sbjct: 802 AINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPS 861

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    + L VPL  +    ++W E 
Sbjct: 862 VMQAA----VKLDVPLVADAGWGHDWYEA 886


>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 919

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/981 (28%), Positives = 467/981 (47%), Gaps = 102/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q    L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H
Sbjct: 28  QNRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTH 83

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR++ YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+
Sbjct: 84  IAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 143

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P
Sbjct: 144 IATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVVEKYGLTP 203

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++ N   ++  K  + + E+
Sbjct: 204 QQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQALVDNVDSVRG-KVGDALREH 262

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +   +       TD                               LI  V      D 
Sbjct: 263 LASVIRN----RELTD-------------------------------LIKDVPLAQTPDT 287

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             ++P   D                        +F  L D+  +  +   P+      ++
Sbjct: 288 LRLQPWDRD---------------QIHRLFDDLEFRMLRDRLFETLAAVEPEVDEGFDVR 332

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +            +   ++  W+ +  +       +    + A+ +   A+AI + D 
Sbjct: 333 GGA------------LEAGELAVWLAEHSSGKRFGLAVAGTHL-AYDADCTALAIVSADG 379

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          +ID S     D            + L  +  +    K  H  K     L
Sbjct: 380 EG--------RYIDTSALDPDDE-----------AALASWLADPGPPKALHEAKLAMHDL 420

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK--SSIPIDKI 533
              G ++ G   D  L +Y++  G+ S  +  +A ++L    +     ++  S +     
Sbjct: 421 AGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENPQQQQLSLLDDTDG 480

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +D Q  +  I  +  +L L   L  +L       +   ++ P+  V++ ME  GI +D D
Sbjct: 481 TDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLAGMENAGIAVDLD 540

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L+ P   +TKTG     
Sbjct: 541 LLSELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQMPKTKRTKTGYTTDA 600

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                  +   +P ++++L  R  +++K T  D L N +     R+HT ++     TGRL
Sbjct: 601 DALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDG-RIHTTFNQTIAATGRL 658

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+AH+++   L + F 
Sbjct: 659 SSTEPNLQNIPIRTEAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFN 718

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  VA+  FGV IE+V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +
Sbjct: 719 TGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQM 778

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF G+ +Y+       R++GY  T+ GRR +  E++S    +R   ERAA+NAPI
Sbjct: 779 DAYFARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPI 838

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI V K++++  L +++LLQ+HDEL+FEV   E      +    M  A 
Sbjct: 839 QGSAADIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALARDKMGGA- 897

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
                L VPL+V++    +W 
Sbjct: 898 ---YPLDVPLEVSVGYGRSWD 915


>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
 gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
          Length = 913

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/981 (28%), Positives = 466/981 (47%), Gaps = 102/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q    L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H
Sbjct: 22  QNRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTH 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR++ YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+
Sbjct: 78  IAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 137

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P
Sbjct: 138 IATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVVEKYGLTP 197

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++ N   ++  K  + + E+
Sbjct: 198 QQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQALVDNVDSVRG-KVGDALREH 256

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +   +       TD                               LI  V      D 
Sbjct: 257 LASVIRN----RELTD-------------------------------LIKDVPLAQTPDT 281

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             ++P   D        +           ++   F +L+    +++     +   LE  +
Sbjct: 282 LRLQPWDRDQIHRLFDDLEF-------RVLRDRLFETLAAVEPEVDEGFDVRGGALEAGE 334

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                                  W+ +  +       +    + A+ +   A+AI + D 
Sbjct: 335 L--------------------AVWLAEHSSGKRFGLAVAGTHL-AYDADCTALAIVSADG 373

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          +ID S     D            + L  +  +    K  H  K     L
Sbjct: 374 EG--------RYIDTSALDPDDE-----------AALASWLADPGPPKALHEAKLAMHDL 414

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK--SSIPIDKI 533
              G ++ G   D  L +Y++  G+ S  +  +A ++L    +     ++  S +     
Sbjct: 415 AGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENPQQQQLSLLDDTDG 474

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +D Q  +  I  +  +L L   L  +L       +   ++ P+  V++ ME  GI +D D
Sbjct: 475 TDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLAGMEKAGIAVDLD 534

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L+ P   +TKTG     
Sbjct: 535 LLSELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQMPKTKRTKTGYTTDA 594

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                  +   +P ++++L  R  +++K T  D L N +     R+HT ++     TGRL
Sbjct: 595 DALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDG-RIHTTFNQTIAATGRL 652

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+AH+++   L + F 
Sbjct: 653 SSTEPNLQNIPIRTEAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFN 712

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  VA+  FGV IE+V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +
Sbjct: 713 TGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQM 772

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF G+ +Y+       R++GY  T+ GRR +  E++S    +R   ERAA+NAPI
Sbjct: 773 DAYFARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPI 832

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI V K++++  L +++LLQ+HDEL+FEV   E      +    M  A 
Sbjct: 833 QGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMGGA- 891

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
                L VPL+V++    +W 
Sbjct: 892 ---YPLDVPLEVSVGYGRSWD 909


>gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1]
 gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1]
          Length = 949

 Score =  734 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/988 (28%), Positives = 474/988 (47%), Gaps = 71/988 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++     +    H
Sbjct: 11  TSRGTLLVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDTEHPD----H 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFRN + P YK  R   PE LL QLPL++    A G+  IE  G+E DD+
Sbjct: 67  LAVAFDVKGGTFRNTMLPQYKGTRDAAPEDLLSQLPLIQRMLSALGVTYIEQPGYEGDDV 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   + +K G+   ++S D+D  QL++    +          + +  E V++K+ + P
Sbjct: 127 IGTLATMGDKAGYRTLVLSGDRDAFQLINDNITVLYPGHHFKDLKHMTAEAVVEKYHVTP 186

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+   L AL G++ DNIPG+PG+G   AA  + +YG L+ I+ +A  I  KK  E + E 
Sbjct: 187 EQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDQIIEHADEITGKK-GEALREN 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCD 295
            E  +L+R +  L  D+ + + L+ L     +  RL      LEF  +  NRV  T++  
Sbjct: 246 IEQVKLNRSVNALVRDLELDVTLDDLTFGTVDTARLNDLFSKLEFGIRTRNRVLKTFNAG 305

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                             + ++TE +R    +    +   +  + +++   P    L   
Sbjct: 306 TTTG--------------VTVQTESNRVVLPEVMTITHGDELRTWVDANMPPADEHLHGD 351

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + +   I+  S   I NT                                 A+  S + 
Sbjct: 352 DEDANPAIDAGS--LIENTMTCTN----------------------------AVNHSWVL 381

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           Q +  +         L +  +        +   I + L+   +  H   + H  K  + +
Sbjct: 382 QAEGVAKPGNASMASLMLMVNGKGAQIEHVDDSIANELQHMLDGYHRSMVVHGYKEQQHL 441

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-ILKSRKSSIPIDKI 533
           L   GI++     D  L  Y++     +  +   A  +L    +E   ++ + ++ +D +
Sbjct: 442 LESVGITLPTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLDLDDM 501

Query: 534 S--DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
               +   +    ++ ++  L  +L   L       + + ++ P+  V+  ME  G Q+D
Sbjct: 502 DGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAGAQVD 561

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L ++  + + +    +E  ++ +GE+ NL SPKQL  ILF  +      KTK+G + 
Sbjct: 562 MIRLTEMRDQFAADARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKSGSYT 621

Query: 652 TTAQDLEQINCG------DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           T A  L+ +          N  +  +L  R+ +K+K     +L +  N R  R+HT +  
Sbjct: 622 TNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLK-QIVQTLIDATNPRDGRIHTTFEQ 680

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKI 764
               TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A ++  
Sbjct: 681 TVAATGRLSSVDPNLQNIPNRNAAGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGD 740

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F +  D H+ VA+ ++G+ +E+++   R H K +++ + YG+S + LA QL+I 
Sbjct: 741 EALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGLSTYGLAQQLKIS 800

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA     +YF  F  +HEY+E   +  R+ GY ETI+GRR ++  + SP  ++R+  E
Sbjct: 801 PKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAVRDAAE 860

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAA+NAPIQGSAADI + AMI    SL D  L ++++LQIHDELV E+   E   A+ ++
Sbjct: 861 RAALNAPIQGSAADIMKIAMIRAADSLRDACLKSRIILQIHDELVVEIAPGEAEQATALV 920

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++ME A    + + VPL  +  + ++W
Sbjct: 921 RNAMEHA----VTMAVPLDASTGIGSDW 944


>gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 908

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/979 (28%), Positives = 455/979 (46%), Gaps = 98/979 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++       +HF
Sbjct: 16  SRPRLMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASMLANTLRDE----APTHF 71

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R+E + +YKANR K P+    Q+ L+     A       + GFEADDII
Sbjct: 72  AVAFDVSRKTWRSEEFTEYKANRSKTPDEFKGQVELLGELLDAMHAVRFAVDGFEADDII 131

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE EGF V I++ D+D  QLVS  T +    K      +   E V +K+G+ P 
Sbjct: 132 ATLATQAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPA 191

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPG+G KTAA  + ++G+  +++     +K  K  +N+ ++ 
Sbjct: 192 QYPDFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFADLVERVEEVKG-KAGQNLRDHL 250

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E      KL    T+          ++   + P+ ++ L+        +R A     D  
Sbjct: 251 EAV----KLNRRLTE----------MVRTVDLPKGVADLER----APYDRKAVAMVLDTL 292

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            I    L          A E E                D T+  + E  P          
Sbjct: 293 EIRNPSLRERLLAVDPGAEEAEAGPPAAPGVEV-----DGTALGSGELAPWLAEHG---- 343

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                      T+I+    +  W                          +  A S  +  
Sbjct: 344 -----------TEILGVATVDTW-------------------------ALG-AGSVAEIA 366

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              +      F   ++  + ++                +  +    K+ HN K    V  
Sbjct: 367 LAAAGGAAAWFDPTALDEADET------------AWAAWLADPARPKVFHNAKSAMRVFA 414

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            +G ++ G   D  L +Y++  GR S D+ ++  ++L    +E+  +  +   +   +D 
Sbjct: 415 EHGWTVEGVGMDTALAAYLVKPGRRSFDLDALTLEYLG---RELAPAATADGQLAFGADE 471

Query: 537 QVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             +  A+   +  IL L      +L       +   ++ P   ++++ME  GI  D+  L
Sbjct: 472 GAEADALMVQARAILDLGAAFGERLEEVGAAGLLRDVELPTSALLARMERHGIAADRPHL 531

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +    +  +    +  +  +G +FNL SPKQL ++LF +L  P   +TKTG       
Sbjct: 532 EAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELGLPKTKRTKTGYTTDADA 591

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   DN +   +L  R+ +K++ T  + L   I     R+HT +S     TGRL+S
Sbjct: 592 LAWLAGQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADG-RIHTSFSQTVAATGRLSS 649

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQN+P++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F + 
Sbjct: 650 TDPNLQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSG 709

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H   AA++FGV    V  +MRR  K +++ + YG+S F L+ QL I   EA   I  
Sbjct: 710 EDLHTTAAAQVFGVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEARALIDA 769

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+ +  +  R+ GY  T+FGRR +  ++NS     R   ER A+NAPIQG
Sbjct: 770 YFERFGGVRDYLRRVVDEARETGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQG 829

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM++V ++L++  LA++MLLQ+HDE+V E+   E     Q++ H M  A   
Sbjct: 830 TAADIVKIAMLNVGRALDEAGLASRMLLQVHDEIVLEIAPGERDRTEQLLRHEMADA--- 886

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            ++LR PL V++    +W+
Sbjct: 887 -VHLRAPLDVSVGHGPDWE 904


>gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
 gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
          Length = 924

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/1000 (31%), Positives = 518/1000 (51%), Gaps = 115/1000 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +  +FL+D  SFI+RA++A     P+ +R   G+P  A   F NM+ KL    R++    
Sbjct: 9   KPPVFLLDSMSFIFRAYHAMQRQRPMSTRA--GVPTAATYVFVNMINKL----RRDFAPE 62

Query: 60  HFAVIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLV 98
            FA +FD  A  FR+E                      Y  YKANR ++P  L  QLP +
Sbjct: 63  FFAAVFDVSAPVFRDERAKAMATIRKWNAKTQKFDEVEYAGYKANREEMPADLAQQLPYI 122

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           R A +AF IP ++ +GFEADD+I T    A  +G  V ++S DKD+MQLV+    + +  
Sbjct: 123 RRALEAFRIPILQAEGFEADDVIGTLAREAAAQGHPVFVVSNDKDMMQLVNEQVKILNPA 182

Query: 159 KEE-KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
           K+   +D E VI+  G+PPE+++ + AL GD+IDN+PG PGIG K +  L+Q++G++E  
Sbjct: 183 KDNLVLDREKVIETLGVPPERVIDVMALRGDAIDNVPGAPGIGEKGSVDLIQQFGSVEAA 242

Query: 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           L  A+ +K+K  RE++    +   LS++LV +  D  + +PL                  
Sbjct: 243 LDRAAEVKRKTYRESLENNRDNILLSKELVTI--DCAVPLPL------------------ 282

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
                          D DA   +P                      T     +F+SL  +
Sbjct: 283 ---------------DLDAMRTQP---------------PDAAACRTLFTELEFTSLLKE 312

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
            +     +  + L     +++  + +              +    +L    +       +
Sbjct: 313 LAPAEEAEAVEYLTHPSPEQVKTFLLTALQKGFAFALPVQETQAAQLSEADA-------E 365

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL--SYLKK 455
           +++   + P+A  +S LD  + ++ +       ++    Q        T  +L  S L+ 
Sbjct: 366 SVEEADATPVAQNLSMLDMFEQSAVETPES-TPVAPAEWQLGVAVEAGTALVLPLSTLRP 424

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
             E+    K  H++K     L    I++RG  +D+ML SY+L+   ++H ++ +  ++ +
Sbjct: 425 LLEDATIPKRVHDLKSTLRALSTQDIALRGAVDDVMLYSYLLNPTHTTHRLSDVTARFRN 484

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
           +  +E   + ++ +P              E ++ I  L   LR ++  E  L VYE++D 
Sbjct: 485 HALRE---TGENELP--------------EAAHAIFTLAPTLREEVEREDTLKVYEQIDL 527

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+  V+  ME  G++ID ++L+ +   ++ ++  + + IY+ +G +FN++SPKQLGD+LF
Sbjct: 528 PLAPVLLAMEQHGVRIDSEMLRALGDRLAADMHRVSQQIYEQAGHRFNINSPKQLGDVLF 587

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            K+  P   K   G+  +TAQD+ +     N + + +LE+RQL+K+KS Y DSLP   + 
Sbjct: 588 NKMNLPRPLKYGKGKVISTAQDVLEELAAHNDVPRLVLEFRQLAKLKSNYVDSLPLLADS 647

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +  RVHT +    T TGRL+S  PNLQNIP++T LG++IR AFI+ P +KL+SADYSQIE
Sbjct: 648 QG-RVHTTFHQVGTATGRLSSTNPNLQNIPVRTALGREIRAAFIAAPGRKLLSADYSQIE 706

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR++AH ++   L   +    DIH + A+E+FGV  E +  + R  AK +NF I+YGISP
Sbjct: 707 LRLMAHFSEDPLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNFGIVYGISP 766

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F LA QL I + EA  YI  YF R+ G+  YI++     R+   V T+FGR     +I S
Sbjct: 767 FGLAQQLGIDQHEARQYIDTYFARYQGVRAYIDRVLEQTRREQRVRTLFGRVRPIPDIQS 826

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
             ++ R   ER A+N P+QG+AAD+ + AMI +   ++   L T M LQ+HDEL+F+VPE
Sbjct: 827 RNANQRGFAERTAVNTPLQGTAADLIKLAMIRIDARIKKKNLQTLMTLQVHDELLFDVPE 886

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            E+     ++ H ME      + L+VP+  +I +  NW++
Sbjct: 887 AEVEVVEDLVRHEMEHV----VELKVPIVADIGIGENWRD 922


>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 887

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/989 (31%), Positives = 493/989 (49%), Gaps = 117/989 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  +RAF+A        +  +GL  NA+  F NML  +L    K+  
Sbjct: 1   MNKK-KLLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQED 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR  +Y DYK  R K P  L  QLP +R   +  GI + E+  +EA
Sbjct: 56  PSHILVAFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173
           DDII T      + G+ V ++S DKDL QL S    +Y T     K E    +H+ +  G
Sbjct: 116 DDIIGTMAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + + ++AL GD  DN PG+  +G KTA  L+QEYG++EN                +
Sbjct: 176 VTPTEFIDMKALMGDPSDNYPGVAKVGPKTAFKLIQEYGSVEN----------------L 219

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
             + +  + S+                           L   L A +   L+ +   T +
Sbjct: 220 YNHVDEMKKSK---------------------------LKENLIASKDNALLGKKLATIN 252

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           CD+    PV + ++    +G  I+        +   +F +   Q  ++   +T       
Sbjct: 253 CDS----PVEVTLDDLSYEGSNIDDLRRFYEKMNFRRFLADLAQKGELTENKT------- 301

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    +    Y  +         + +L      +F +     +   +     A+  
Sbjct: 302 --------EVKKQDYVVLSADN-----LDQLPKAAEVTFYLAMFGDNYHLADFAGFALKI 348

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             +                   S+D            S LK   E+    K   ++K   
Sbjct: 349 GGET----------------FVSRDVFLLQE------SPLKGMLEDSAVQKNVFDLKRTT 386

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SI 528
             L+R GI       D++L SY++D+ ++S+D+  + Q +  +  K   E+    K+  I
Sbjct: 387 YGLYRLGIKAESLTFDLLLASYLVDNEKNSNDLGELVQGYDYFDLKTDLEVYGKGKNAKI 446

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D+    H    +  I  L   L  +L   +   +Y+ ++ P   V+++ME+ GI
Sbjct: 447 PAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGI 503

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++    LK++  + +  L  LEE IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG
Sbjct: 504 KVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNSPKQLGVILFEKLGLPVIKKTKTG 563

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ ++       +P++ +ILE+RQ+SKI+STY   L + I++R  R+HT Y    T
Sbjct: 564 Y--STSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQTLT 621

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQIELR+LAH++    +
Sbjct: 622 ATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNM 681

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+   DIH   A +IF ++ +++V+   RR AK +NF I+YGIS + L+  L I R 
Sbjct: 682 QEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRK 741

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I  YF ++PGI  Y+++     R+ GY ETI  RR +  +I++   ++R+  ER 
Sbjct: 742 QAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERT 801

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP +E+ T  +I+  
Sbjct: 802 AINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPS 861

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    + L VPL  +    ++W E 
Sbjct: 862 VMQAA----VKLDVPLVADAGWGHDWYEA 886


>gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
 gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
          Length = 886

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/986 (31%), Positives = 495/986 (50%), Gaps = 117/986 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA           DGL  NAI  F NML  ++    K++  S+
Sbjct: 3   QKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTDPSN 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y DYK  R K P  L  QLP++R   +  GI + E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + + E+ G+ V I++ D+DL QL S  T +  T       E    EH+ +  G+ P
Sbjct: 119 IGTLSKMGEEAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGVTP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++E                 + E+
Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSVE----------------KLYEH 222

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  + S+              L+  ++ D +   L   L  ++    +         + 
Sbjct: 223 VDEMKKSK--------------LKENLINDKDKAFLAKKLATIDRDSPVEVTLADTKLEE 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            NIE +         K    E  +   +  K                             
Sbjct: 269 PNIEDLRNLYERLGFKKFLAELGVSGVSADK----------------------------- 299

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y ++      +  + K+      +F +     +   +     ++   D+
Sbjct: 300 ----QESEKYEYQELTKENISE--LGKINE-KEVTFYLAMLGDNYHLAPLEGFSLKVGDK 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              +   V                            L++  E++   K   +IK   + L
Sbjct: 353 IYVSKDVVLLQETP----------------------LRQMLEDKKIKKNVFDIKRTYVGL 390

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPID 531
           HR  I   G + D++L SY++++  +S+D+  +A  +  Y      +   K +K ++P  
Sbjct: 391 HRLDIDAEGLDYDMLLASYLVNNENNSNDLGEVAHLYGDYSVKTDLEVYGKGKKKAVP-- 448

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              D +  EH      VI +L   L  KL   +   +YE ++ P+  V+++MEITGI+++
Sbjct: 449 --EDDEFFEHLAAKVVVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVE 506

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L Q+  + +  L  LE  IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG + 
Sbjct: 507 ASVLNQLGNDFALKLQELEHKIYQQAGEEFNLNSPKQLGHILFEKLNLPPIKKTKTG-YS 565

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + LEQ+    +PI+  IL++RQ++KI++TY   L   I     R+HT Y    T TG
Sbjct: 566 TSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKGLLECIQPDG-RIHTRYLQTLTATG 623

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP +TD G++IR+AF+       + S DYSQ+ELR+LAH++    + + 
Sbjct: 624 RLSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEA 683

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F++  DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R +A 
Sbjct: 684 FKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAK 743

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +I  YF ++P I +Y++K     R+ GY ETI  RR +  +I+S   ++R+  ER AIN
Sbjct: 744 TFIDNYFEQYPQIKDYMDKAIKEAREKGYAETIMHRRRYLPDIHSKNFNVRSFAERTAIN 803

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI++ K L++  L TKM+LQ+HDEL+F+VP+ E+ T  +I+   M+
Sbjct: 804 SPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKAELDTIKKIVPEVMQ 863

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPL  +    +NW + 
Sbjct: 864 SA----VTLDVPLIADSNWGHNWYDA 885


>gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
 gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
          Length = 880

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/983 (32%), Positives = 492/983 (50%), Gaps = 119/983 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPL----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             + LVDG+S ++RA+ AT      + +   G+  NA+  F  M+ K++     E   SH
Sbjct: 2   KKITLVDGNSILFRAYNATAYPGAKVLQTSTGIYTNAVFAFSGMIDKII-----EISNSH 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD    T R++ Y DYKA R ++PE L  Q+PL+    +  GI    + G+EADDI
Sbjct: 57  MLIAFDTGEPTHRHKSYDDYKAGRKEMPEELGSQIPLIHELIKYLGIKEYSMAGYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +AEK G+ V + S+D DL+QLV+    ++   K     E    E + + +G   
Sbjct: 117 IGTLAKMAEKAGYKVDVFSSDYDLLQLVTEHITVHMLKKGMRVVETYTPETLKETYGFSH 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E  +  +AL GD  DNIPG+PG+G  TA  L+ EYG LENIL NA  IK  K  ENI   
Sbjct: 177 ELFIDFKALVGDKSDNIPGVPGVGEVTAKKLIAEYGTLENILNNAEHIKG-KLGENIRTN 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A  S++L  + TD+P+   LE   + + +   LI+F K LE    + ++  +Y+   
Sbjct: 236 KEQAVFSKELSTILTDMPLPFDLEDTKVGEVDEESLINFYKRLE----LKQLVISYNKKN 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             +                        TT +TS+F                         
Sbjct: 292 PEVA----------------------ATTAETSEF------------------------- 304

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                      Y  I +   ++  + +       +        +   ++   + +S    
Sbjct: 305 ----------QYKAIDSENALKSLLNQ-----DLAIYFEFSDFNYHKAELWGVGLS---- 345

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                               + +   ++ T    +  K + E+  + K  ++ K  K+ L
Sbjct: 346 ------------------NGKINYFVDSETFLNSASFKAYLESSKYKKYTYHYKGTKVFL 387

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPID 531
            + G        D++L +Y++ S     D   IAQ++    + Y  +   K  K ++P  
Sbjct: 388 KKLGTEFNHVTYDLLLAAYLIQSSIGKQDFTFIAQQFQITDIQYDEEVYGKGAKKALP-- 445

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +  S  + H  + + +I +L       L     L +   ++ P+ DV++ ME  G+ +D
Sbjct: 446 -LIPSDYEGHIAKKAYIIHKLMQQTLDVLTERNQLSLLNDVELPLSDVLADMEYQGLTVD 504

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L+  + ++S  +  L   I  L+G  FN+ SPKQLGD+LF  L  P+G KTKTG   
Sbjct: 505 LKELENQTKDMSLRIDKLRTEILLLAGVDFNVDSPKQLGDVLFDTLGLPNGKKTKTGY-- 562

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T  ++       +PII  I+E+RQL+K+ STY   +   + +   RVHT Y+ A T+TG
Sbjct: 563 STGIEVLNNLIDHHPIINLIIEYRQLTKLYSTYLIGIKESVFEDN-RVHTIYNQALTLTG 621

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+SLEPNLQNIPI+T+ G++IR+ FI  P    + ADYSQIELR+LA +A +  L Q F
Sbjct: 622 RLSSLEPNLQNIPIRTEEGRQIRKLFIPEPDSYFVGADYSQIELRVLAAMADVKNLKQAF 681

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           E   DIH + A ++F V+   V  + RR AK +NF IIYGI P+ L+  + +   EA ++
Sbjct: 682 EEDQDIHTVTAQKVFHVDT--VDSEQRRRAKAVNFGIIYGIGPWSLSEDIGVTVKEAENF 739

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RY   +P I +Y+     F + +GYVET+  RR +  E++S   ++R   +R ++NAP
Sbjct: 740 ISRYLEVYPEIKDYMTNIVEFAKTHGYVETLLNRRRYIPELSSKVFNLREFGKRTSLNAP 799

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI +H  L+D+K  +K++LQ+HDEL+ EV +EE+    ++I + MEKA
Sbjct: 800 IQGTAADIIKLAMIDLHNYLKDNKKKSKLILQVHDELIVEVVKEELDEMKEVIPNIMEKA 859

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                NL V LK +  V NNW E
Sbjct: 860 ----FNLGVRLKTSCDVGNNWYE 878


>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 913

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/981 (28%), Positives = 465/981 (47%), Gaps = 102/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q    L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H
Sbjct: 22  QNRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTH 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR++ YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+
Sbjct: 78  IAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 137

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P
Sbjct: 138 IATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVVEKYGLTP 197

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++ N   ++  K  + + E+
Sbjct: 198 QQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQALVDNVDSVRG-KVGDALREH 256

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +   +       TD                               LI  V      D 
Sbjct: 257 LASVIRN----RELTD-------------------------------LIKDVPLAQTPDT 281

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             ++P   D        +           ++   F +L+    +++     +   LE  +
Sbjct: 282 LRLQPWDRDQIHRLFDDLEF-------RVLRDRLFETLAAVEPEVDEGFDVRGGALEAGE 334

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                                  W+ +  +       +    + A+ +   A+AI + D 
Sbjct: 335 L--------------------AVWLAEHSSGKRFGLAVAGTHL-AYDADCTALAIVSADG 373

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          +ID S     D            + L  +  +    K  H  K     L
Sbjct: 374 EG--------RYIDTSALDPDDE-----------AALASWLADPGPPKALHEAKLAMHDL 414

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK--SSIPIDKI 533
              G ++ G   D  L +Y++  G+ S  +  +A ++L    +     ++  S +     
Sbjct: 415 AGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENPQQQQLSLLDDTDG 474

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +D Q  +  I  +  +L L   L  +L       +   ++ P+  V++ ME  GI +D D
Sbjct: 475 TDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLAGMENAGIAVDLD 534

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L+ P   +TKTG     
Sbjct: 535 LLSELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQMPKTKRTKTGYTTDA 594

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                  +   +P ++++L  R  +++K T  D L N +     R+HT ++     TGRL
Sbjct: 595 DALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDG-RIHTTFNQTIAATGRL 652

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIPI+T+ G++ R AF+      +L++ADYSQIE+RI+AH+++   L + F 
Sbjct: 653 SSTEPNLQNIPIRTEAGRRTRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFN 712

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  VA+  FGV IE+V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +
Sbjct: 713 TGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQM 772

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF G+ +Y+       R++GY  T+ GRR +  E++S    +R   ERAA+NAPI
Sbjct: 773 DAYFARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPI 832

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI V K++++  L +++LLQ+HDEL+FEV   E      +    M  A 
Sbjct: 833 QGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMGGA- 891

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
                L VPL+V++    +W 
Sbjct: 892 ---YPLDVPLEVSVGYGRSWD 909


>gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
 gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
          Length = 905

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/977 (30%), Positives = 461/977 (47%), Gaps = 98/977 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRA+YA      R   G P  A+ GF +ML   L++ R     +H AV F
Sbjct: 17  LLLLDGHSLAYRAYYALKEADLRTTTGQPTGAVQGFTSMLINTLRDER----PTHVAVAF 72

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E +P+YKANR   P+    Q+ L+       GI  I  +GFEADD+IAT T
Sbjct: 73  DVSRQTFRTEKFPEYKANRSASPDDFKSQVGLIDELLAGLGITVIRKEGFEADDVIATLT 132

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A  +G+ V I++ D+D +QLV+    +    +      +     V +K+ + P++   
Sbjct: 133 TQAAADGYEVRILTGDRDSLQLVTENVTVLYPKRGVSDLSRFTPAAVEEKYELTPQQYPD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P IPG+G KTAA  ++E+G+L  ++  A  +K  K  E +  + E  R
Sbjct: 193 FAALRGDPSDNLPNIPGVGEKTAAKWIREFGSLTELIERADEVKG-KAGETLRAHLEQVR 251

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           L+R+L  L  DVP       L     +                             N E 
Sbjct: 252 LNRELTELIKDVP-------LPAGPPD----------------------LAWASEGNPEA 282

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V    +T E                      S+ D+ + + +         E +    Q 
Sbjct: 283 VYQLFDTLEFS-------------------RSMRDRVAPLLASDADDSPVGEAVALQGQ- 322

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++    +  W+    T   A+   +  +          +A +T D      
Sbjct: 323 ---------VLEVGQLADWLAANATGEGATGVSVHGSWGRGTGDVSGLAFATADG----- 368

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 ++D +     D T            L  +  +    KI H+ K   L L   G 
Sbjct: 369 ---TAAYVDATQLDPADET-----------ALAAWLADPARQKILHDAKGPSLALAARGF 414

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           ++ G   D  L +Y+  SGR S D+  +A++ L         + ++   +    D++ + 
Sbjct: 415 TLAGVAADTALEAYLAQSGRRSFDLEPLAEEVLGRRLSP-AGADENQGTLFADEDAEAER 473

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                ++ +L L   LR KL       +   ++ P++ V+++ME  GI ID+ L + +  
Sbjct: 474 QMAA-AHAVLDLADALRGKLAETGAEQLLTDIELPLVGVLAEMEQVGIAIDERLFQDLEK 532

Query: 601 EISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
             S       +     +G E  NL SPKQL ++LF  L  P   K KTG           
Sbjct: 533 GFSGEAAKEVDAARAEAGVETLNLGSPKQLQEVLFENLGMPKTKKIKTGYTTDADSLAWL 592

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                +P + ++L WR+++++K T  + L   ++  T R+HT Y+     TGRL+S++PN
Sbjct: 593 QAQTQHPFLDHLLRWREVNRLK-TVVEGLSKSVSPDT-RIHTTYNQMIAATGRLSSVDPN 650

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+T  GQ+IR+AFI+ P  + L++ADYSQIE+RI+AH+++   L + F +  D+H
Sbjct: 651 LQNIPIRTLEGQQIRKAFIAGPGYESLMTADYSQIEMRIMAHLSEDAGLIEAFTSGEDLH 710

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             VAA++F V    V P+ RR  K +++ + YG+S F L+ QL I   EAA  ++ YF R
Sbjct: 711 NTVAAKVFDVEATAVEPEHRRRIKAMSYGLAYGLSAFGLSQQLGIETGEAAKMMEDYFQR 770

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+ +Y+       R  GY ET+FGRR +  ++ S     R + ER A+NAPIQGSAAD
Sbjct: 771 FGGVRDYLHDLVVQARATGYTETMFGRRRYLPDLASDNRQRREMAERMALNAPIQGSAAD 830

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI V + L + +L ++MLLQ+HDELV E+   E     +++   M  A      L
Sbjct: 831 IIKVAMIRVREGLREQQLKSRMLLQVHDELVLEIAPGEAPRVEELVRREMGSAA----EL 886

Query: 959 RVPLKVNIKVSNNWQEE 975
           RVPL V++ ++ NW + 
Sbjct: 887 RVPLDVSVGMAENWADA 903


>gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 870

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/980 (29%), Positives = 482/980 (49%), Gaps = 124/980 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG S + RAFY  P L+   +GL  NAI GF N+L+K+L+  R +    +  V F
Sbjct: 4   KIVLIDGHSILNRAFYGVPDLTNA-EGLHTNAIYGFLNILFKILEEERPD----YLTVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++++ DYK  R  + E L  Q+P+++   +A  I  +E +G EADD++ T  
Sbjct: 59  DVHAPTFRHKMFSDYKGTRKPMAEELRQQVPVMKEVLRAMKIKIVEQEGLEADDLLGTIA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
            I E+ G  V I+S D+DL+QL +    +     +      E      V  ++ + P++ 
Sbjct: 119 GIGERAGMDVAILSGDRDLLQLATDHVKIRIPKTKQGKTEIEDYYAADVKARYQVTPQEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD+ DNIPG+P IG KTA  ++ EYG++EN   +   +K              
Sbjct: 179 IDLKALMGDASDNIPGVPSIGEKTATKIITEYGSVENAYAHVEELKP------------- 225

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                         PR    LK       ++++  T + +A   
Sbjct: 226 ------------------------------PRAAKALKEHYDKAQMSKILATIEVNAP-- 253

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
               +    +E K   + TE   +   +  QF +L                 L R    +
Sbjct: 254 ----ISYELSEAKIGNLYTEEAYEY-FQKLQFKNL-----------------LGRFDVEA 291

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +     +++ ++ + +  ++   +    G  +F              + ++    ++   
Sbjct: 292 KGNQIENAFVRVTDKQQAEELFARA---GKEAF--------------VGVSFGKEEKDAV 334

Query: 420 TSFKVETIFIDLSVHTSQDS----TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             F   + F  + +  S+        +  LT E L  L         +    ++K     
Sbjct: 335 PLFSHSSGFGSVGLAFSEKEIYTIVAEGELTMEDLFSLVGTLAKTTVV-ALFDVKAALSY 393

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +           D+ + +Y+L+  +S +    +A + LS    E                
Sbjct: 394 VRIE--DPESCFDVGIAAYLLNPLKSDYTWLDVAAEHLSLLIDE---------------K 436

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++    +   + VI     +L  K+       ++  ++ P++  +  ME  G++++ + L
Sbjct: 437 TEGYCRSCYEAYVIWAAAAVLEEKMKESGTEELFRTIEMPLLFTLFAMEQAGVRVEAEAL 496

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +    ++   ++ LE+ IY  +GE FN++SPKQLG ILF KLK P G KTKTG   +TA 
Sbjct: 497 RFYGEQLGTKIVELEKEIYAQAGEAFNINSPKQLGVILFEKLKLPHGKKTKTGY--STAA 554

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+      + P+++ ILE+RQL+K+KSTYAD L N+I     R+H  ++   T TGR++S
Sbjct: 555 DVLDKLAPEYPVVEKILEYRQLTKLKSTYADGLANYICADG-RIHGKFNQTITATGRISS 613

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIP++ +LG+ IR+ FI       + ADYSQIELRILAH +    L   +  + 
Sbjct: 614 TEPNLQNIPVRMELGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAK 673

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR+ A+++F    ++V+   RR+AK +NF I+YGIS F L+  L I R EA++YI RY
Sbjct: 674 DIHRITASQVFHTPFDEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASEYIDRY 733

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +PGI ++++ T    ++ GYV T+FGRR    E+ S     R+  ER A+NAPIQG+
Sbjct: 734 FETYPGIKKFLDDTVAHAKEMGYVVTLFGRRRPVPELASSNFMQRSFGERVAMNAPIQGT 793

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI VH+ L + K+ ++++LQ+HDEL+ E  EEE+    +I+   ME+A    
Sbjct: 794 AADVMKIAMIGVHRELTERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAA--- 850

Query: 956 INLRVPLKVNIKVSNNWQEE 975
             L VPL+V++    NW E 
Sbjct: 851 -QLDVPLEVDMHTGRNWYEA 869


>gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
 gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
          Length = 986

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/1035 (29%), Positives = 500/1035 (48%), Gaps = 116/1035 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           K+  L LVDG S  +R+FYA            DG P +   GF   L     ++ K    
Sbjct: 5   KKPTLLLVDGHSLAFRSFYAFSKGGEGGLTTKDGFPTSVTYGFLKSLL----DNCKSIEP 60

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT-QAFGIPAIEIQGFEA 117
               + FD    TFR++  P+YKANR   P++    L  +     ++  +   +  G+EA
Sbjct: 61  KGVTIAFDTAEPTFRHKEDPNYKANRDVAPDIFFQDLDQLEEILKESLNLSICKAPGYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE---------EKIDIEH 167
           DD++ T    A ++G++V I+S D+DL QLV          +           + I+ + 
Sbjct: 121 DDVLGTLANDAAEKGWSVRILSGDRDLFQLVDDERDIAVLYMGGGPYAKSGSPKLINEKG 180

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--- 224
           V +K G+ P K++ L+ALTGDS DNIPG+ G+G KTA  LL E  +L+ +  +   +   
Sbjct: 181 VREKLGVNPNKVIDLKALTGDSSDNIPGVKGVGPKTAINLLNENLDLDGVYKSLQELEKE 240

Query: 225 --KQKK------RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
             K K+       R  +    + A LS+KL  +   +PI   + +  LE  N  +L   L
Sbjct: 241 GEKAKRGAIKGAVRLKLKADKDNAYLSKKLAEILIKIPIDPKV-NYNLEGINESKLAENL 299

Query: 277 KALEFTKLINRVAT------TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ 330
           + LE   L  +V+T             ++ P   +IN   NK              K S+
Sbjct: 300 ERLELHSLSKQVSTFKAIFSKDGSSKKDLNPSSKEINIANNK-------------TKNSE 346

Query: 331 FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL----ET 386
           FS+L++                          I       I N +++  +V ++    + 
Sbjct: 347 FSTLNE-----------------------TKEIPRIEPKIINNLEELNNFVAQIIKHTDA 383

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK---- 442
               +    T +++ F ++ + +     +   D       ++I +     +D   +    
Sbjct: 384 KKPIAIDTETTSLNPFKAELVGLGFCFGESLKDI------VYIPIGHKNKEDDLIEINQI 437

Query: 443 -NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR 500
                +E++  L+ +F +    K   N KYD+L+L R+GI + G   D +L  Y+ D+  
Sbjct: 438 NQLKIEEVIFALQDWFSSNENPKTLQNAKYDRLILLRHGIILNGVVMDTLLADYICDAT- 496

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +  IA +   +  K      K       +       +   +  +  +L ++   +L
Sbjct: 497 LKHSLDEIAYREFGFKPKSFSDIVKKGEDFSYVDIKSASMYCGMDVYLTRKLAIIYINRL 556

Query: 561 IVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
                KL+++ + +++P+  V++++E TGI ID   LK +S E++K L ++E+ +Y+++G
Sbjct: 557 KETSIKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKRLNTIEKEVYNIAG 616

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
            +FNLSSPKQLG++LF KL        KT    +T   + +    D+PI+K I+E R +S
Sbjct: 617 SEFNLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLEKLESDHPIVKIIIEHRTIS 676

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+ +TY D+LP  I K T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+
Sbjct: 677 KLLNTYVDALPKLIEKETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFL 736

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
                KL+SADYSQIELRIL H++    L   +  + D+H + A  +F    + +    R
Sbjct: 737 PQKDWKLLSADYSQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKILF--EKDAIDADER 794

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R  KTINF +IYG+   R A    +   EA  ++ ++  R+P + +++E  +      G+
Sbjct: 795 RIGKTINFGVIYGMGAQRFARSTGVSLIEAKYFLSKFKERYPAVFKFLEYQERLALSQGF 854

Query: 859 VETIFGRRIHY------------------DEINSPKSSIRNINERAAINAPIQGSAADIT 900
           VET+ GRR ++                  D   + ++ +     RAA NAPIQGS+ADI 
Sbjct: 855 VETLLGRRRYFHFNKNGLGRLLGTPPNEIDLTTARRAGMEAQQLRAAANAPIQGSSADII 914

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI +H +L +  LA K+LLQ+HDELV EV  +++     ++ ++ME A    + L V
Sbjct: 915 KLAMIQLHSALRETGLAAKILLQVHDELVLEVNPKDLEETKLLVQNTMENA----VKLSV 970

Query: 961 PLKVNIKVSNNWQEE 975
           PL V   V  NW E 
Sbjct: 971 PLIVETGVGVNWMEA 985


>gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307]
 gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307]
          Length = 986

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1023 (28%), Positives = 469/1023 (45%), Gaps = 109/1023 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
             +  L LVDG S  +R+FYA            DG+P +   GF   L    ++ + +  
Sbjct: 23  TTKPLLLLVDGHSLAFRSFYAFSKGGEGGLSTQDGIPTSVTYGFLKALLDNCKSLKPQG- 81

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ-AFGIPAIEIQGFE 116
                + FD    TFR++    YKANR   P+     +  ++   +    IP     GFE
Sbjct: 82  ---VVIAFDTAEPTFRHKADETYKANRDVAPDHFFQDVDNLQEILKGCLDIPLCLAPGFE 138

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIE 166
           ADD++ T       EG+ V I+S D+DL QLV                  +    +I  E
Sbjct: 139 ADDVLGTLANRGANEGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPTEIREE 198

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V+ K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL E G+L+ +      +  
Sbjct: 199 GVVSKLGVMPNKVVDLKALTGDSSDNIPGVRGVGPKTAINLLSENGDLDGVYKALEALSD 258

Query: 227 KK---------RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
            K          +  +    E A  SR L  +  D+P+      L L       L   L+
Sbjct: 259 PKANSGALKGALKGKLSNDKENAYRSRMLAEILIDIPLPEDP-RLGLGLVELGALRQRLE 317

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
            LE   L  +     +  +A  +                        ++ T   + LS+ 
Sbjct: 318 ELELNSLQRQSEKFAELFSAAGQ-----------------------LSLDTGSSADLSEA 354

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI----GSASFK 393
            S+  SE TP    L+                 I ++  +Q  V +L+       + +  
Sbjct: 355 LSEPESE-TPTTPPLKP--------------QLITSSAQLQALVSQLQQRSADAPAVAID 399

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
             T  ++ F ++ + +     +  +D +      +I +    ++          E+L  L
Sbjct: 400 TETTDLNPFRAQLVGLGFCWGEADNDLA------YIPIGHSGAEG----QLPLAEVLEAL 449

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW 512
             +  +    K   N KYD+LVL R+G+ + G   D +L  Y+ D+    H++  +AQ+ 
Sbjct: 450 APWLASPTQRKCLQNAKYDRLVLLRHGLELNGVAVDTLLADYLRDASA-RHNLEELAQRH 508

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYE 570
             +                 +      ++   + ++  +L + L  +L    E L  +  
Sbjct: 509 YGFRPTSFSDLVGKGQTFADVPIEAAAQYCGMDVHLTYRLAIDLVQQLEQLGEALPQLLS 568

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            L+ P+  V++QME TGI+ID   L+++   +   L  LE+     +GE+FNL+SPKQLG
Sbjct: 569 ELELPLEPVLAQMEATGIRIDVPYLQELGQSMGDKLQQLEQQAIAAAGEEFNLASPKQLG 628

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           ++LF  L        KT    +T   + +     +P++  +LE R LSK+KSTY D+LP 
Sbjct: 629 ELLFNTLGLDRKKSRKTKTGWSTDAAVLEKLEDAHPVVPLVLEHRTLSKLKSTYVDALPQ 688

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            +   T RVHT ++ A T TGRL+S  PNLQNIP++T   ++IR+AF+      L+SADY
Sbjct: 689 LVESETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTAYSRQIRKAFLPQKDWTLLSADY 748

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELRIL H+     L + + +  D+H + A  +  ++  +VS + RR  KTINF +IY
Sbjct: 749 SQIELRILTHLCGEEALVEAYNSGDDVHALTARLL--LDKSEVSDEERRLGKTINFGVIY 806

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY- 869
           G+   R A    + ++EA +++ RY  R+P +  ++E  +      GYVET+ GRR  + 
Sbjct: 807 GMGAQRFARATGVSQAEAKEFLSRYKQRYPKVFAFLEWQERLALSRGYVETLMGRRRPFH 866

Query: 870 -----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
                            D   + +  +     RAA NAPIQGS+ADI ++AM+ + + L 
Sbjct: 867 FDPQGLGRLKGTDPAEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKKAMVDLQQLLL 926

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           D +L  ++LLQ+HDELV E     + T    +  +ME+A    ++L VPL V I    NW
Sbjct: 927 DQQLPARLLLQVHDELVLECAPNALATVQSSVQRTMEQA----VSLSVPLVVEIGSGPNW 982

Query: 973 QEE 975
            E 
Sbjct: 983 MEA 985


>gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
 gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
          Length = 986

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1025 (28%), Positives = 482/1025 (47%), Gaps = 95/1025 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
             +  L LVDG S  +R+FYA            DG P +   GF   L     ++ K   
Sbjct: 5   ANKPLLLLVDGHSLAFRSFYAFSKGGEGGLATKDGTPTSVTYGFLKALL----DNCKGLS 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFE 116
                + FD    TFR++   +YKANR   P++    L  ++   +    +P     G+E
Sbjct: 61  PQGIVIAFDTAEPTFRHQADVNYKANRDVAPDIFFQDLKQLQEILENNLQLPLCLAPGYE 120

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIE 166
           ADD++ T    A ++G+ V I+S D+DL QLV                  +     ID  
Sbjct: 121 ADDVLGTLANQASRDGWGVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPSLIDEA 180

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V+ K G+ P K+V L+ALTGDS DNIPG+ G+G KTA  LL+E G+L+ I    + ++ 
Sbjct: 181 GVLSKLGVIPNKVVELKALTGDSSDNIPGVKGVGPKTAITLLKENGDLDGIYNALAEVEA 240

Query: 227 -----------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
                         +  +    + A LS  L  +  D+P+      L L   +   L   
Sbjct: 241 EGEKASRGAIKGALKSKLSNDRDNAYLSLHLAEILVDIPLPKAP-RLELGSVDNDGLTDR 299

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           L +LE   L+ +V +            V   ++   K    E E  +  T      SS  
Sbjct: 300 LSSLELNSLVRQVPS-----------FVATFSSGGFKANRHELEPSKSATSPVEPESSTE 348

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI----GSAS 391
            + S  N +   +                      I N +++Q+ V++L          +
Sbjct: 349 TKVSNDNEQPALEP-------------------QLITNPEELQELVKRLMGYRDRLKPVA 389

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
               T  ++ F ++ + + +   +   D ++          +  ++ +       + +L 
Sbjct: 390 LDTETTALNPFCAELVGLGVCWGEGLQDLAYIPIGHHPPAELLEAEAAC--QLPLEAVLK 447

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ 510
            +  +  +    K   N KYD+L+L R+G+++ G   D +L  Y+ D+    H +  +A+
Sbjct: 448 AIAPWLASNDHPKALQNAKYDRLILLRHGLALEGVVMDTLLADYLRDAAA-KHGLEVMAE 506

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHV 568
           +    T     +          ++      +   + ++  +L L LR +L     KLL +
Sbjct: 507 REFKITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLALRLRAQLEDMGAKLLPL 566

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
            E++++P+  V++ ME TGI+ID   L+ +S E+ + L  LEE   + +G  FNL+SPKQ
Sbjct: 567 LEQVEQPLEPVLALMEATGIRIDLPYLQTLSVELGETLERLEEQAREAAGVDFNLASPKQ 626

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG++LF  L        +T    +T  ++ +    D+P++  +LE R LSK++STY D+L
Sbjct: 627 LGELLFETLGLNRKKSRRTKTGWSTDANVLEKLEADHPVVPLVLEHRVLSKLRSTYVDAL 686

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+     +L+SA
Sbjct: 687 PQLVESETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWQLLSA 746

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRIL H++    L + F N  D+H + A  +  ++ ++VS   RR  KTINF +
Sbjct: 747 DYSQIELRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSSDERRLGKTINFGV 804

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+   R A    + ++EA D++ RY  R+  +  ++E  +      GYVET+ GRR  
Sbjct: 805 IYGMGAQRFARSTGVSQAEAKDFLSRYKQRYAKVFTFLELQERLALSEGYVETLLGRRRP 864

Query: 869 YDEIN------------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           +                      + +  +     RAA NAPIQGS+ADI + AM+ + + 
Sbjct: 865 FHFDRNGLGRLLGKDPMDIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQEK 924

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L    L  ++LLQ+HDELV EV    +    Q++V +MEKA    + L VPL V   + +
Sbjct: 925 LTAADLPARLLLQVHDELVLEVDPTALEDVQQLVVQTMEKA----VELSVPLVVETGIGD 980

Query: 971 NWQEE 975
           NW E 
Sbjct: 981 NWMEA 985


>gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912]
 gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912]
          Length = 890

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/979 (31%), Positives = 476/979 (48%), Gaps = 105/979 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S +YRAF+A PLLS   +G   NA+ GF  ML +LLQ  R     +H AV F
Sbjct: 7   KLLLIDGNSILYRAFFALPLLSNA-EGKHTNAVYGFAMMLLRLLQEER----PTHVAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y DYK  R K P+ L  Q P+ R    A GIP +E +G+EADD+I T +
Sbjct: 62  DVGKETFRHEFYADYKGTREKTPDELSEQFPMAREMLGAMGIPVLEAEGYEADDLIGTMS 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE +G  V +++ DKDL+QLVS       T +     E+     V K++G+       
Sbjct: 122 REAEADGVQVVVLTGDKDLLQLVSSHVTAVLTRRGIREVERYQPADVEKRFGLR------ 175

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
                               +    L    G+  + +     + ++   + +  Y     
Sbjct: 176 -------------------PEQIVDLKGLMGDTSDNIPGVPGVGERTAAKLLQAYGNVEG 216

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           + + L  +                     +L   L        +++         A I  
Sbjct: 217 VYQHLNEV-------------------SGKLQGRLAEHRDQAFLSKRL-------ARIHR 250

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            V      E+         +  T ++   F SL ++  ++  E              ++ 
Sbjct: 251 EVPLERRWEDLRWVPAPAREVRTALQKLGFRSLLERIGEVFPEDA----------DGAEG 300

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +      +     +     ++E  G       T          + +    LD +    
Sbjct: 301 TPDRALGAGVGVGGTLDPGRVQIEEWG----DAPTTGR-------VGVRGLFLDLEGGYQ 349

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSY---LKKFFENEHFLKIGHNIKYDKLVLHR 478
           F          V  ++    +  L  E  S+   L +         + ++IK  K++  R
Sbjct: 350 F-----GTPRGVGVAEGERVRYLLCGEDSSWAEGLTQMLREPGLT-VLYDIKSWKVLADR 403

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G ++ G   D++L +Y+++      D+  + +++L  +   +                +
Sbjct: 404 LGFTLPGDAFDVLLAAYLINPQDGHPDLTEVFERYLGVSVPPLEGRGSPQG-------EE 456

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            Q      +  +  ++  L+  L +  L  +Y  L+ P+  V+++ME TG+++D   L+ 
Sbjct: 457 RQRWWALYAAALAGVYPALKRDLEIRGLWPLYHNLELPLSFVLAKMERTGVRVDATRLRS 516

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +    S  +  LEE IY L+G  FNL+SPKQL +ILF KL  P   KTKTG   +T  D+
Sbjct: 517 LGETFSTEIARLEEEIYKLAGTTFNLNSPKQLAEILFDKLGLPPQKKTKTGY--STGADV 574

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +     + I++ IL+WRQL K++STY + L   I   T ++HT +  A T TGRL+S +
Sbjct: 575 LEKLAPYHEIVQRILDWRQLIKLQSTYIEGLLKVIRPETGKIHTCFQQAVTATGRLSSTD 634

Query: 718 PNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP++ + G+++R+AFI      K++SADYSQIELR+LAH +K   L Q F + LD
Sbjct: 635 PNLQNIPVRVEEGRRLRQAFIPSESGWKIVSADYSQIELRVLAHFSKDPALVQAFRDDLD 694

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AAE+F V  E+V+P MRR AK +NF I+YGIS + L+  L IPR EAA++I RYF
Sbjct: 695 IHARTAAEVFEVPQEQVTPGMRRQAKAVNFGIVYGISDYGLSQNLGIPRKEAAEFIARYF 754

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            +FP +  Y+E+T    R+NG+V T+ GRR +  +I+S   ++R+  ER A+N PIQGSA
Sbjct: 755 AKFPRVKSYMEETVAAARKNGFVTTLLGRRRYLPDIHSSNYNLRSFAERTAMNTPIQGSA 814

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAM+ V + L +     KMLLQ+HDELVFEVP EE+     ++  +ME A    +
Sbjct: 815 ADIIKRAMVEVDRRLTEGDFRAKMLLQVHDELVFEVPPEEVGALQDMVKQAMESA----V 870

Query: 957 NLRVPLKVNIKVSNNWQEE 975
           +L VPLKV+I   +NW E 
Sbjct: 871 SLDVPLKVDIHAGDNWYEA 889


>gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 883

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/979 (32%), Positives = 508/979 (51%), Gaps = 107/979 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L ++DG+S I RAFYA P L+ K +G+  NAI GF N+L+K++     E   +H  V
Sbjct: 2   EKRLIIIDGNSLINRAFYAVPPLTDK-NGMHTNAIYGFANILFKIIS----EYSPTHMGV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+++Y DYK  R  +PE L  QL  ++     F I  +E+ G+EADDII T
Sbjct: 57  AFDLKAPTFRHKMYADYKGTRKGMPEELAEQLAPLKEMLGYFNITKMELAGYEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            +   EKE     II+ D+D  QL S    +  T K     E +D + ++  +GI P + 
Sbjct: 117 VSKHFEKEDIETLIITGDRDSFQLASDKIKILFTKKGVSELEIVDKQVMMNNYGITPTQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD+ DNI G+ GIG KT   L++EY N+EN+                 E+ + 
Sbjct: 177 IDLKALMGDTSDNIKGVAGIGEKTGLKLIKEYKNIENLY----------------EHIDE 220

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            + S       T   +    E   L                 +K +  +      +  + 
Sbjct: 221 IKGS-------TKTKLENDKESAYL-----------------SKQLATININIPVEIESD 256

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E ++ D +  +     IE  +      K   FS+  +Q S    E + +           
Sbjct: 257 EFLLKDFDNYKLNEFFIEHNMM-SLVKKLKNFSNSDEQNSGSEGENSAK----------- 304

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                  S   I  + D+ +++Q  +     + KI+ +  +     P  +++  L     
Sbjct: 305 -------SEKIIDYSTDVDEFLQ--DKHTRIAIKIVRE--NYLVDIPAILSVCMLSNGKF 353

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +                               +K   E+E+  KIG++IK + L L  Y
Sbjct: 354 YAISDF-------------------------EKIKHILEDENIEKIGYDIKAEYLSLLPY 388

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW-LSY--TRKEILKSRKSSIPIDKISD 535
            IS+RG   D+ +  Y+L    +S+DI+ IA ++ LS+  + +E     K    I+  + 
Sbjct: 389 DISLRGIKYDLKIAKYLLSPDNNSYDISEIAMEYGLSHLQSHEEFFGKGKKEKVINPFTK 448

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +V+E+ ++  +++   + ++   +   ++  ++E ++ P+I V+S ME  G+ ID+  L
Sbjct: 449 KEVEEYYMKVLDIVDSSYDIVMTAIRDSEMTKLFEDVEIPLITVLSDMEYIGVAIDKKEL 508

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +    E ++++L LE  IY+L+GE+FN++SPKQLG ILF KL  P   KTKTG + T A 
Sbjct: 509 ENQKIEFAQHILRLESEIYELAGEEFNINSPKQLGVILFEKLNLPPVKKTKTG-YSTDAA 567

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE+++   + II  I+ +RQ +K++STY + L N IN  T+R+H+ ++     TGR++S
Sbjct: 568 VLEELS-DMHDIIGKIISYRQYTKLQSTYVEGLLNIINPNTERIHSSFNQTIAATGRISS 626

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIP++ ++G+ +R+AFI+     L+ +DYSQIELR+LAHI+    L Q F    
Sbjct: 627 TEPNLQNIPVRLEIGRNLRKAFIARQGCVLVDSDYSQIELRVLAHISDEEALIQAFSKDA 686

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+FGV+I +V+ + R  AK +NF I+YGIS F L+  L I + +A  YIK Y
Sbjct: 687 DIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVYGISDFGLSNNLGITKKKAGQYIKTY 746

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
             R+  I +Y++    F  ++GYV TI GRR    ++      I+N+ +R A+N PIQGS
Sbjct: 747 LDRYKNIEKYMQDVVAFGEEHGYVTTILGRRRSIPQLKQKNIMIKNLGKRLAMNTPIQGS 806

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V   L+   L +K++LQ+HDEL+ E   +E      ++   M KA    
Sbjct: 807 AADIIKIAMVRVSNRLKRENLKSKLILQVHDELIIEATADEQDYIKALLQEEMSKA---- 862

Query: 956 INLRVPLKVNIKVSNNWQE 974
            +++V LKV+I V N+W +
Sbjct: 863 YDMKVELKVDINVGNSWFD 881


>gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 886

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/989 (31%), Positives = 494/989 (49%), Gaps = 118/989 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  +RAF+A        +  +GL  NA+  F NML  +L    K+  
Sbjct: 1   MNKK--LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQED 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR  +Y DYK  R K P  L  Q P +R   +  GI + E+  +EA
Sbjct: 55  PSHILVAFDAGKTTFRTAMYKDYKGGRDKAPAELSEQFPYLREMLKDMGIKSYELANYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173
           DDII T      + G+ V ++S DKDL QL S    +Y T     K E    +H+ +  G
Sbjct: 115 DDIIGTMAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + + ++AL GD  DN PG+  +G KTA+ L+QEYG++E                N+
Sbjct: 175 VTPTEFIDMKALMGDPSDNYPGVAKVGPKTASKLIQEYGSVE----------------NL 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            ++ +  + S+                           L   L A +   L+ +   T  
Sbjct: 219 YDHVDEMKKSK---------------------------LKENLIAGKDNALLGKKLATIK 251

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           CD+    PV + ++    +G  ++        +   +F +   Q  ++   +T       
Sbjct: 252 CDS----PVEVTLDDLSYEGSNVDDLRRFYEKMNFRRFLADLAQKGELTENKT------- 300

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    +    Y  +         + +L      +F +     +   +     A+  
Sbjct: 301 --------EVKKQDYVVLSADN-----LDQLPKAAEVTFYLAMFGDNYHLADFAGFALKI 347

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             +                   S+D            S LK+  E+    K   ++K   
Sbjct: 348 GGET----------------FVSRDVFLLQE------SPLKEMLEDSAVQKNVFDLKRTT 385

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SI 528
             L+R GI   G   D++L SY++D+ ++S+D+  + Q +  Y  K   E+    K+  I
Sbjct: 386 YGLYRLGIKAEGLSFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDLEVYGKGKNAKI 445

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D+    H    +  I  L   L  +L   +   +Y+ ++ P   V+++ME+ GI
Sbjct: 446 PAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGI 502

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++    LK++  + +  L  LEE IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG
Sbjct: 503 KVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNSPKQLGVILFEKLGLPVIKKTKTG 562

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ ++       +P++ +ILE+RQ+SKI+STY   L + I++R  R+HT Y    T
Sbjct: 563 Y--STSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQTLT 620

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQIELR+LAH++    +
Sbjct: 621 ATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNM 680

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+   DIH   A +IF ++ +++V+   RR AK +NF I+YGIS + L+  L I R 
Sbjct: 681 QEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRK 740

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I  YF ++PGI  Y++      R+ GY ETI  RR +  +I++   ++R+  ER 
Sbjct: 741 QAKEFIDEYFDQYPGIQAYMDWAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERT 800

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP +E+ T  +I+  
Sbjct: 801 AINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPS 860

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    + L VPL  +    ++W E 
Sbjct: 861 VMQAA----VKLDVPLVADASWGHDWYEA 885


>gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
 gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
          Length = 901

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/979 (28%), Positives = 463/979 (47%), Gaps = 101/979 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG S  YRAF+A P    R   G   NA+ GF +ML  LL++       +H AV
Sbjct: 14  PRLLLIDGHSMAYRAFFAVPADRFRTSTGQVTNAVFGFTSMLINLLRDE----APTHVAV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E + DYKANR   P+    Q+ L++    A  IP + ++G+EADD+IAT
Sbjct: 70  AFDVSRKTFRSETFADYKANRLATPDDFKGQVELIKDVLGALSIPVLAVEGYEADDVIAT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKM 179
            T  A  + + V I + D+D +QLV+ +  +    K      + D E V +K+G+ P + 
Sbjct: 130 LTAKAGDD-YEVLICTGDRDALQLVTDSVTVLYPRKGVSDLVRFDPEGVQEKYGLSPAQY 188

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD  DN+PGIPG+G KTAA  ++++G+L  ++     +K K            
Sbjct: 189 PDFAALRGDPSDNLPGIPGVGEKTAAKWIRQFGSLGELIDRVDEVKGKV----------- 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                        G  L S L ++   + +  +      +   +
Sbjct: 238 -----------------------------GEALRSHLDSVMLNRQLTELVRDVPLE---V 265

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P  L +   +   +    +      ++   F+SLS    + +S    +   L+      
Sbjct: 266 TPDDLALKPWDRDAVHRLFDELEFRVLRDRLFASLSSTEPEADSGFEVEGAALQ------ 319

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                            + +W+ +  + G+                 + +A S       
Sbjct: 320 --------------PGTVGEWLSQHASGGTT----------------VGLAFSVTGASVT 349

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           +  +   +          D T   TLT++    L ++  +E+  K+GH++K     L   
Sbjct: 350 SDVQSVALAAPNGEGAYLDVT---TLTEDDERALGEWLADENIHKVGHSLKKALHGLRSR 406

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI-DKISDSQ 537
           G  + G   D  L +Y++  G+ S  +  +  ++L    +         + + D  SD++
Sbjct: 407 GWRLAGLVMDTELAAYLVRPGQRSFKLDDLVLRYLGKELRSEGVEGDGQLSLLDTDSDNE 466

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           +    +  +  +L+L   L  +L       +   ++ P++ +++ +E  GI +D D+L +
Sbjct: 467 IVRRELVRARAVLELSSALSAELAAIGATTLLADIELPLLSMITDLEAAGIAVDIDVLTE 526

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + A  +  +    E  Y + G++ NL SPKQL  +LF +L  P   +TKTG         
Sbjct: 527 LEAHYANRVKQATEQAYSVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQ 586

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                 ++P ++ +LE R  +K++ST  + L   +     R+HT      T TGRL+S++
Sbjct: 587 TLYEKTEHPFLQYLLEHRDATKLRST-VEGLIKAV-ADDGRIHTTLHQTITATGRLSSVD 644

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP++TD G++IR AF+      +L++ADYSQIE+RI+AH++    L + F +  D
Sbjct: 645 PNLQNIPVRTDEGRRIREAFVVGEGYAELMTADYSQIEMRIMAHLSNDEALIEAFHSGFD 704

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            H   AA +F V+  +V+ + R   K +N+ + YG+S + L+ QLRI   EA   +  YF
Sbjct: 705 FHAATAARVFDVDPTEVTGEQRAKIKAMNYGLAYGLSAYGLSQQLRISTEEARALMDEYF 764

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RF G+ +Y+        + GY ETIFGRR +  ++ S     R + ER A+NAPIQGSA
Sbjct: 765 LRFGGVRDYLHSVVERAAKEGYTETIFGRRRYLPDLTSTNRQRREMAERMALNAPIQGSA 824

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ VH++L +  L +++LLQ+HDEL+ EV + E     +++   M  A     
Sbjct: 825 ADIIKVAMLGVHRALAEAGLRSRVLLQVHDELMLEVADGEHAQVEELVRREMGSA----Y 880

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L VPL+V++    +W + 
Sbjct: 881 ELSVPLEVSVGYGRSWNDA 899


>gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH]
 gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH]
          Length = 905

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/976 (31%), Positives = 496/976 (50%), Gaps = 77/976 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             ++L+D  + I+R ++A          G  VNA  GF   L+ +++    E+      V
Sbjct: 2   KEIYLIDALNIIFRNYHAMKNNPLTNSKGENVNAFIGFFKTLFFIIKEKNPEN----LIV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E QG+EADD+IA+
Sbjct: 58  AFDSETQTFRQQKYPSYKATRDAPPDNLIPQIHWIKEGLLKANIPFFERQGYEADDLIAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVC 181
           +   AE+  +   IIS DKDL+QL+S  T +         K+D ++V++K+G+   ++  
Sbjct: 118 FAKKAERNNYLTYIISPDKDLLQLMSDQTKILKIENSSFVKMDNDYVMQKFGVNTSQIKD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             ++ GD  DNIPGI GIG K A  LL E+  L+ I  N   I   + +E +L   + A 
Sbjct: 178 YLSIVGDRSDNIPGIKGIGGKGAVKLLNEFQTLKGIYENIDSI-NNRYKEILLREIKNAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS +L+ L  D+ +   LE   LE+     L S  +    T LI                
Sbjct: 237 LSYELISLVEDLELP-ALEEFKLENLKEDVL-SLFEEYSATTLIKSYKAILKK------- 287

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                                     T+Q       TS +N+ +T Q+            
Sbjct: 288 -----------------------RHVTNQTQGTLQTTSYLNTLKTIQE------------ 312

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
              N  Y  I+  + +   ++KL+     S    T + + + ++ + I++S  +      
Sbjct: 313 --ENIKYETILTKEQLDLLIEKLKKTSYVSIDTETTSTNVYEAQILGISVSFKE------ 364

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
              E+ +I +          K+   + I     +FF+ +  L IG N K+D  +  R+G 
Sbjct: 365 --FESYYIPIETKEK-----KSIEREYITQKFNEFFKTKPKL-IGQNYKFDYKIFTRHGF 416

Query: 482 S-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           + +  + D M+ +YV+D   +   +  +++K+L +   +  +    +  +  I    V  
Sbjct: 417 NAIPPYFDTMIAAYVIDPN-TKVSLDFLSEKYLMHKNIKYQEIVSQNGTLKDIPLETVSN 475

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E++++  +L+ +   KL  + L  +   ++ P  +V+++ME  GI +D+D L+Q S 
Sbjct: 476 YAAEDADITFRLFKIFAKKLKEDNLESLMIDVEMPFSNVITEMEENGIYLDKDYLRQYSQ 535

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E++K L  +E  I    G KFNL+S KQL  +LF +LK       K     +T+  + + 
Sbjct: 536 ELTKELKLIENEIIQSIGIKFNLNSSKQLYRVLFDELKLVLPPNVKK---HSTSIKVLEA 592

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +  I  I+++R++SK+K+TY D+L   IN +T ++HT +  A   TGR+ S  PNL
Sbjct: 593 IKDQHESIPKIIQYRKISKLKNTYTDNLIKFINAKTNKIHTNFIQAKAATGRILSTAPNL 652

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPIK + G+KIR AF        ISADYSQIEL ILAH ++   L + F+N  DIH  
Sbjct: 653 QNIPIKDEKGRKIREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEAFKNKEDIHIK 712

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+++F V+ +KV+P MRR AK+INF IIY +S   L+ +L I R EA  +I  YF+ + 
Sbjct: 713 TASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSAHGLSQELSIKREEAQKFIDSYFNLYS 772

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I  +I+   +F R+NGY ET+  RR +  EINS   S R+  ER AIN+ IQGSA+DI 
Sbjct: 773 KIKIFIQNRIDFARKNGYSETLLKRRRYIKEINSQNHSERSGAERIAINSTIQGSASDIM 832

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ V+   +   L +K+LLQ+HDE++ E P++E   A  II   ME A      L++
Sbjct: 833 KIAMVRVYNEFKSKNLKSKILLQVHDEILIESPKQECEEAKTIIKEMMENA----YPLKL 888

Query: 961 PLKVNIKVSNNWQEEN 976
           PL++NI+   +W E +
Sbjct: 889 PLRINIETGKSWGEIH 904


>gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 893

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/980 (29%), Positives = 468/980 (47%), Gaps = 101/980 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DGSS  +RAFYA  L    H G+  NAI GF  ML KLL    KE   +   + F
Sbjct: 4   KFAVIDGSSLFFRAFYALQLPPNAH-GVHTNAIHGFAMMLVKLL----KEHAPAQIVIAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR  +YPDYK  R K PE L+ Q+PL++      GIP +E+  +EADDII T  
Sbjct: 59  DKSRTTFRTALYPDYKGTRDKTPEELIEQIPLLKELAACLGIPFVEMDDYEADDIIGTLG 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A   G A  +++ D+D +QL+ P   +  T K      + D     +++G  P +++ 
Sbjct: 119 TQAAAAGAAAIVVTGDRDALQLIRPGLDVLLTKKGISDTHRYDTAVFEEEYGFAPIRLID 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GDS DNIPG+PGIG KTA  LL  YG +E++L +A  +  KK   +++ Y + A 
Sbjct: 179 LKGLMGDSSDNIPGVPGIGPKTATKLLLSYGTIESVLDHAEEVAGKKLSASLIAYRDQAL 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS++L  ++ DVP             +   L +F +  E   +   ++            
Sbjct: 239 LSKELATIKCDVPELRYTAEGFRMQPDRAALEAFCRTYELRSVWRSLSEFL--------- 289

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                               ++T ++ S F++  D+ ++ +         L+ +   S  
Sbjct: 290 ----------------APAAQETHVEQSLFAAAEDEETESDLVPLDLDASLDPVSLRSAE 333

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I                           +   + +    F    +A+A+S  D +    
Sbjct: 334 RI---------------------------AVAGVFEGTAPFL-NLVALALSYGDVRGVLH 365

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                                     E+LS L +         +  + K       + G+
Sbjct: 366 ASSAHF-------------------AEVLSILSE------RPVVLWDAKRY----AQAGV 396

Query: 482 SM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKISDS 536
           ++     D  L  Y+L        +   A  +L         E      +   +   +  
Sbjct: 397 TLGTEVFDFALADYLLRPEERQRSLDRAASAYLDELSAPQTAEDRTLSAAYAHLANGAPL 456

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             ++ A     +  +L+      L   KL  +Y  ++ P++ +++ ME TG+ +++  L 
Sbjct: 457 HNEQTAFYEVILAARLYAPTSAALADAKLTKLYGEIELPLVPILAAMERTGVAVNRAALV 516

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +  A  ++ +  +E++IY L+G +FN+SSPKQLG++LF +L   S    KT    +T  +
Sbjct: 517 RALAAANERIAEIEQDIYALAGTEFNISSPKQLGEVLFDRLGLTSPKMKKTKTGYSTNAE 576

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +     +P++  +L +R  SKI+STY + +   I   T RVHT ++   T TGRL+S 
Sbjct: 577 VLEEMRAAHPVVDRVLTYRMWSKIRSTYLEGIGALIRPDTGRVHTSFNQTVTATGRLSSS 636

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++T+ G+ +R  F        L+SADYSQIELRILAH++    L   F    
Sbjct: 637 DPNLQNIPVRTEEGRAVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQ 696

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+FGV + +V+   RR AK +NF I+YG+S + L+  L IPR EAA YI+RY
Sbjct: 697 DIHARTASEVFGVPLAEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERY 756

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F R+ G+  ++++       NG+V T++GRR     INS     R+  ER A+N PIQG+
Sbjct: 757 FERYHGVRAFLDRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGT 816

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI    +L    + +++LLQ+HDELV EV  +EI   ++++  +M  A    
Sbjct: 817 AADLIKIAMIRADAALRAAGVKSRILLQVHDELVLEVVNDEIAQVTELLTAAMSGAA--- 873

Query: 956 INLRVPLKVNIKVSNNWQEE 975
             L VPL V++    NW E 
Sbjct: 874 -QLAVPLAVDVHTGKNWAEA 892


>gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 866

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/982 (31%), Positives = 475/982 (48%), Gaps = 128/982 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K     LVDGSS +YRAFYA PLL    DG   NA+ GF NML KLL     E    +
Sbjct: 1   MSK--RFILVDGSSLLYRAFYALPLLQTA-DGAYTNAVYGFANMLQKLLN----EYAPDY 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFRNE++  YK  R   P  L  Q+P++     A G+P IE  G+EADDI
Sbjct: 54  LAVAFDKGKKTFRNEMFAAYKGTRKPTPPELSSQIPMLHEFLAALGVPLIEEAGYEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           + T    A +E   V +++ D+D +QLV     +  T K        D +  ++++G PP
Sbjct: 114 LGTLAVKAAREDVDVLVVTGDRDALQLVRENIRVLFTRKGMTDLLLYDEKLFLEEYGFPP 173

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + ++ ++ L GD+ DNIPG+PGIG KTA  LL + G+LE +    + I  KK +EN    
Sbjct: 174 KGLIDMKGLMGDASDNIPGVPGIGPKTAKKLLIDCGSLEGVYERLAEISGKKLKEN---- 229

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                    L   +    ++  L  +  +             L F               
Sbjct: 230 ---------LASNKEKAFLSKDLATIRCDMP-----------LAF--------------- 254

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                   D    + +G  ++    R      +   +       +  E  P+        
Sbjct: 255 ------APDSYVMKPRGDELQAFFQRYEMKSLATAFASFAAADGVREETAPE-------- 300

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA-FHSKPIAIAISTLD 415
                     S   + + +  + + +K E  G  S     +       ++          
Sbjct: 301 ---------LSLHTMDDEEAKKAFAEKAEEQGFFSIAACFEGKVPDMEAR---------- 341

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKL 474
                             H    + G+  L +   L+     FE E   KI H  K    
Sbjct: 342 ------------------HLVLCAGGEVLLAEAAELACFSSLFEKEDIQKIVHEYKP--- 380

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL-SYTRKEILKSRKSSIPIDKI 533
                G+      D+ L +Y+L    S +D+AS+A  +L S    E  +           
Sbjct: 381 -FLHCGMGFTPCFDVSLAAYLLAPAASQYDMASLAATYLPSVNAAEAAREGALG------ 433

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                   A   + ++ +++ +L+ +L  ++LL +YE ++ P+++V++ ME  GI +D+ 
Sbjct: 434 --------AAWCAVLLEKIYPVLKERLEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRV 485

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKT 652
            L + S EIS  +  L   IYDL+  +FN++SPKQL  +LF +L       TK T    +
Sbjct: 486 ALHEKSREISAQIAHLTAEIYDLAKGEFNINSPKQLSAVLFERLDLQPPMGTKKTKTGYS 545

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T  ++ +    D+PI++ IL +R  +K++STY DS+   I+ RT+R+HT ++   T TGR
Sbjct: 546 TNAEVLEAMRFDHPILEKILSYRFWTKLQSTYLDSMEGLISPRTKRIHTSFNQTVTATGR 605

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIP++T+ G++IR  F        L+SADYSQIELRILAH+++     + F
Sbjct: 606 LSSSEPNLQNIPVRTEEGRQIRALFEPSDGYDALMSADYSQIELRILAHLSEDKNFLEAF 665

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH   A+E+FGV +E V+  +RR AK +NF I+YGIS + L+  L I R EAADY
Sbjct: 666 LHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVYGISDYGLSKDLHISRQEAADY 725

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF +  GI  +I+       ++G+V TIFGRR     I S   + R + ER A+N P
Sbjct: 726 IASYFAKCSGIKRFIDGVVEKAHKDGFVTTIFGRRRDLPAIKSSNYNQRTLAERMAMNTP 785

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI  H++L++    +++LLQ+HDELV E+ + E    ++++  +ME  
Sbjct: 786 IQGSAADIIKLAMIKTHRALQEGGFKSRILLQVHDELVLEIMQNEKEQVAELVRDAMEN- 844

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
               + L VPL V+I    NW 
Sbjct: 845 ---IVQLSVPLSVDIHTGENWA 863


>gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
          Length = 930

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/1012 (27%), Positives = 496/1012 (49%), Gaps = 125/1012 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG S + RAFY  P L+   +GL  NA+ GF N++ K+L+  +    A H AV 
Sbjct: 2   DKLVLIDGHSIMNRAFYGVPDLTN-SEGLHTNAVYGFLNIMLKILEEEK----ADHAAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E+Y  YK  R  +P+ L  Q+P+++   +A GIP + ++GFEADDI+ T 
Sbjct: 57  FDLKEPTFRHEMYDAYKGTRKPMPQELHEQVPVMKDVLKAMGIPIMTLKGFEADDILGTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID------IEHVIKKWGIPPEK 178
               + +G  V+++S D+DL+QL      +        +        E V++++ + PE+
Sbjct: 117 AKRCQAKGIQVSVVSGDRDLLQLADEHIKIRIPRTSRGVTEIKDYFPEDVLREYQVTPEE 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GD+ DNIPG+P IG KTA  ++ +Y ++EN   +   I+  + ++ + E+ +
Sbjct: 177 FIDVKALMGDASDNIPGVPSIGEKTATSIIAQYKSIENAYAHLEEIRPPRAKKALEEHYD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A    ++      +    P+E                    F     R+   Y  +A  
Sbjct: 237 MA----QMSRKLAAICTDCPVE--------------------FNYEDARIEDLYTPEA-- 270

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                      +K  +F S+  +  K  +++             
Sbjct: 271 ------------------------YQYMKRLEFKSILARFDKTAAQEAAAPDI------- 299

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    +T + + K   +   +    G A F++I     A       ++ S  +  +
Sbjct: 300 ------KTHFTLVKDIKTADKIFSRAAETGLAGFQLILGRDGALKETAEQLSFSFDENGE 353

Query: 419 DTSFK----VETIFIDLSVHTSQD-----STGKNTLTKEILSYLKKFF------------ 457
             + K           L++   ++     + G+    + +L  L+               
Sbjct: 354 VKAGKKARSGLNPVTGLALCLGEEDIYCLAAGEQITGEYLLEQLRALCGRNQEQDNQAQN 413

Query: 458 ----ENEHFLKIGH-NIKYDKLVLHRYGISMR---GFEDIMLMSYVLDSGRSSHDIASIA 509
               +N    ++   ++K     L      ++      D  +  Y+L+  + ++    +A
Sbjct: 414 SQGQDNPGVRELWALDLKSMLAYL-----ELKDTDPVYDAGVAGYLLNPLKDTYAYDDLA 468

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDS------QVQEHAIENSNVILQLWLLLRPKLIVE 563
           + +L  T    + SR   +  + + D+         +          +    L  +L   
Sbjct: 469 RDYLGLT----VPSRADLLAKEDLGDALWRGEKNAVDCVCYMGYTAWKAAAPLAGQLKDT 524

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +  +Y  ++ P+I  +  ME  G+++++  LK+    +   +  LE+ IY  +G +FN+
Sbjct: 525 GMYSLYTDIEMPLIYSLFHMEQEGVKVERAELKEYGDRLKVGIAKLEQEIYQETGHEFNI 584

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG+ILF +++ P G KTKTG   +TA D+ +    D P+++ IL++RQL+K+ ST
Sbjct: 585 NSPKQLGEILFEQMELPGGKKTKTGY--STAADVLEKLAPDYPVVQKILDYRQLTKLNST 642

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           YA+ L  +I +   R+H  ++   T TGR++S EPNLQNIP++  LG++IR+ F+     
Sbjct: 643 YAEGLAAYIGEDG-RIHGKFNQTITATGRISSTEPNLQNIPVRMALGREIRKVFVPKEGC 701

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             + ADYSQIELRILAH++    L + + ++ DIH + A+++F V +++V+P  RR+AK 
Sbjct: 702 VFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASQVFHVPLDEVTPLQRRNAKA 761

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS F L+  L I R EA +YI +YF  +PG+  +++      ++ GYV T++
Sbjct: 762 VNFGIVYGISAFGLSEGLSISRKEAVEYIDKYFETYPGVKTFLDGLVKQGKEQGYVTTLY 821

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR    E+ S     R   ER A+N+PIQG+AAD+ + AMI+V + L+   L ++++LQ
Sbjct: 822 GRRRPIPELKSANFMQRQFGERVAMNSPIQGTAADVMKIAMIAVDRELKKRGLKSRIVLQ 881

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           IHDEL+ E   +EI    +I+   M+ A     +LRV L+V  +V  +W + 
Sbjct: 882 IHDELLIETARDEIEAVKEILTDKMKHAA----DLRVSLEVEAEVGKSWFDA 929


>gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/978 (31%), Positives = 473/978 (48%), Gaps = 126/978 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGSS +YRAFYA PLL    DG   NA+ GF NML KLL     E    + AV 
Sbjct: 4   KRFILVDGSSLLYRAFYALPLLQTA-DGAYTNAVYGFANMLQKLLN----EYAPDYLAVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFRNE++  YK  R   P  L  Q+P++     A G+P IE  G+EADDI+ T 
Sbjct: 59  FDKGKKTFRNEMFAAYKGTRKPTPPELSSQIPMLHEFLAALGVPLIEEAGYEADDILGTL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              A +E   V +++ D+D +QLV     +  T K        D +  ++++G PP+ ++
Sbjct: 119 AVKAAREDVDVLVVTGDRDALQLVRENIRVLFTRKGMTDLLLYDEKLFLEEYGFPPKGLI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD+ DNIPG+PGIG KTA  LL + G+LE +    + I  KK +EN        
Sbjct: 179 DMKGLMGDASDNIPGVPGIGPKTAKKLLIDCGSLEGVYERLAEISGKKLKEN-------- 230

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                L   +    ++  L  +  +             L F                   
Sbjct: 231 -----LASNKEKAFLSKDLATIRCDMP-----------LAF------------------- 255

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
               D    + +G  ++    R      +   +       +  E  P+            
Sbjct: 256 --APDSYVMKPRGDELQAFFQRYEMKSLATAFASFAAADGVREETAPE------------ 301

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA-FHSKPIAIAISTLDQKDD 419
                 S   + + +  + + +K E  G  S     +       ++              
Sbjct: 302 -----LSLHTMDDEEAKKAFAEKAEEQGFFSIAACFEGKVPDMEAR-------------- 342

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                         H    + G+  L +   L+     FE E   KI H  K        
Sbjct: 343 --------------HLVLCAGGEVLLAEAAELACFSSLFEKEDIQKIVHEYKP----FLH 384

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL-SYTRKEILKSRKSSIPIDKISDSQ 537
            G+      D+ L +Y+L    S +D+AS+A  +L S    E  +               
Sbjct: 385 CGMGFTPCFDVSLAAYLLAPAASQYDMASLAATYLPSVNAAEAAREGALG---------- 434

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
               A   + ++ +++ +L+ +L  ++LL +YE ++ P+++V++ ME  GI +D+  L +
Sbjct: 435 ----AAWCAVLLEKIYPVLKERLEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHE 490

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQD 656
            S EIS  +  L   IYDL+  +FN++SPKQL  +LF +L       TK T    +T  +
Sbjct: 491 KSREISAQIAHLTAEIYDLAKGEFNINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAE 550

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +    D+PI++ IL +R  +K++STY DS+   I+ RT+R+HT ++   T TGRL+S 
Sbjct: 551 VLEAMRFDHPILEKILSYRFWTKLQSTYLDSMEGLISPRTKRIHTSFNQTVTATGRLSSS 610

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIP++T+ G++IR  F        L+SADYSQIELRILAH+++     + F +  
Sbjct: 611 EPNLQNIPVRTEEGRQIRALFEPSDGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQ 670

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+FGV +E V+  +RR AK +NF I+YGIS + L+  L I R EAADYI  Y
Sbjct: 671 DIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVYGISDYGLSKDLHISRQEAADYIASY 730

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F +  GI  +I+       ++G+V TIFGRR     I S   + R + ER A+N PIQGS
Sbjct: 731 FAKCSGIKRFIDGVVEKAHKDGFVTTIFGRRRDLPAIKSSNYNQRTLAERMAMNTPIQGS 790

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI  H++L++    +++LLQ+HDELV E+ + E    ++++  +ME      
Sbjct: 791 AADIIKLAMIKTHRALQEGGFKSRILLQVHDELVLEIMQNEKEQVAELVRDAMEN----I 846

Query: 956 INLRVPLKVNIKVSNNWQ 973
           + L VPL V+I    NW 
Sbjct: 847 VQLSVPLSVDIHTGENWA 864


>gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429]
 gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429]
          Length = 890

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/978 (31%), Positives = 508/978 (51%), Gaps = 102/978 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           LFL DG+  +YRAFYA     +   G+  NA+ G   ML K L+        +   ++  
Sbjct: 4   LFLFDGTGLVYRAFYAIDQFLKTSTGMHTNALYGIAKMLIKFLKEHVNMEKDACAFILDS 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                 R EI  DYK+NRP+ P+++L QLP +     AFG+  +++ G+EADDIIAT   
Sbjct: 64  KGGSKKRKEILKDYKSNRPETPDLILEQLPYIEEFVDAFGVKVLKLLGYEADDIIATIAK 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                   V II+ DKDL+QLV     ++   +        D + V +K+G+ PE+    
Sbjct: 124 RFCNAFEKVNIITGDKDLLQLVDEKVYVWRIERGITELVLYDRKKVFEKYGVFPEQFGDY 183

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +L GD IDNIPG+ GIG KTA  LL++YG +                       +    
Sbjct: 184 LSLVGDQIDNIPGVKGIGKKTAVSLLKKYGTI-----------------------DEVLK 220

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           ++KL+                       +L   L+    +   +R       D     P+
Sbjct: 221 NKKLLT---------------------EKLQKLLENATESLEKSRQLVQLIYDV----PL 255

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            ++I     KG   +  +     +K  +FSS+  +       +                 
Sbjct: 256 DVNIEDLIYKGYDSKKLLV---VLKKYEFSSIIKELGLKEEFE----------------- 295

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                YT + + K++ +  ++++ + + S    T ++D F +K + ++IST + +     
Sbjct: 296 ---KKYTIVNSEKELSKLRKRIDEVKTFSIDTETTSLDPFSAKLVGVSISTNEGE----- 347

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                +I +S       +  N   + +L +LK+  E E +  +G N+K+D  V    GI 
Sbjct: 348 ---AYYIPISH-----VSENNLTKEIVLKFLKEILECERYNIVGQNLKFDYKVFMVNGIE 399

Query: 483 MR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-----IDKISDS 536
            +    D M+ +Y+++     +++  +A K+L Y      +   +++P        IS  
Sbjct: 400 PQIPHFDTMVAAYLINPEERRYNLEELALKYLGYKMISFEELVDNNMPLFGNDFSFISIE 459

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +  E++ E+ ++  +L+  L   +    +  ++  ++ P+I+V++QME+ G+  D D LK
Sbjct: 460 KAAEYSCEDVDITFRLYSYLSKYIGE--MKELFYNIEMPLINVLAQMELNGVYFDVDYLK 517

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S    + +  LEE I+++SGE+FN++S KQ+ +ILF KLK P   KT TG+  T A+ 
Sbjct: 518 ELSKRYEEEMKKLEEKIFEISGEQFNINSSKQVAEILFEKLKLPIVKKTATGRNSTNAEV 577

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D  I + ILE+R+  K+KSTY DS+P+ +N  T RVH+ +    T TGRL+S 
Sbjct: 578 LEEL-AKDYEIARLILEYRKFQKLKSTYVDSIPSSVNITTNRVHSSFHQTGTSTGRLSSS 636

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            PNLQN+P +++ G++IR A         ++ ADYSQIELR+LAH+++   L   FEN  
Sbjct: 637 APNLQNLPTRSEEGKEIRHAVKPQFENWYIVGADYSQIELRVLAHMSEDEKLLDAFENDY 696

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH + A++IF V+   V+  MRR  K INF+IIYGISP+ L+ ++ +  +E    I  Y
Sbjct: 697 DIHTITASKIFNVSELMVTEDMRRIGKMINFAIIYGISPYGLSRRIGLNVNETKKIIDNY 756

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  + G+ E+I+KT +F ++NG+V+T+FGR+    ++     ++    ER AIN P+QG+
Sbjct: 757 FKYYQGVFEFIKKTIDFAKKNGFVKTLFGRKRFIPQLKLKNKNLIQEGERIAINTPVQGT 816

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ VH  L+ + L TK++LQ+HDELVFEVP +E+    +II   ME A    
Sbjct: 817 AADIIKIAMVKVHNELKRNSLKTKLILQVHDELVFEVPFDELQIVKEIIKDKMENA---- 872

Query: 956 INLRVPLKVNIKVSNNWQ 973
           + L+VPLKV++     W+
Sbjct: 873 VKLKVPLKVDLYEGREWE 890


>gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment']
          Length = 873

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/971 (30%), Positives = 487/971 (50%), Gaps = 105/971 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGSS+++RA++A P LS   +G+P  A+ GF NML K++++ R E+      V+FD
Sbjct: 6   LYLIDGSSYVFRAYHALPPLSN-SEGIPTGAVYGFTNMLLKIIRDERPEA----MVVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T R+  Y DYKANR ++P+ L  QLP +    +A  IP +  QG EADD+I +   
Sbjct: 61  SAGPTERHTRYADYKANRAQMPDDLSRQLPYIHRVVEAMRIPLLMQQGQEADDLIGSLAR 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A  + F VTI + DKD++QLV P   +YD++KE       V+K++              
Sbjct: 121 QAAAQDFRVTIATGDKDMLQLVGPEIRVYDSMKETVYGESEVVKRF-------------- 166

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
                      G+       ++   G+  + +     I +K               +R L
Sbjct: 167 -----------GVPPGQVVEVMGLMGDPIDNIPGVHGIGEKT--------------ARNL 201

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           +    ++  T+      L +    ++   +++      ++R       D      + LD+
Sbjct: 202 IQQFGNIEETVA----RLHEIKSAKVREIVRSGVEQARLSRELARIRTDL----QIGLDL 253

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
                +              +   F++L    + + S  + + + ++R +++ +      
Sbjct: 254 GQLTLQAPDHSA---MQALFRELGFTALQRAFTPLASHSSLRIVVIDREEEVGEAA---- 306

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
                          + L    S +  +          +   +A           F    
Sbjct: 307 ---------------RGLLASDSVAIAVALRGDGTADGEFFGLAFCAEPDVALCCFP--- 348

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                           + +T   L  ++     E   KIGH++K     + + G+++RG 
Sbjct: 349 ----------------DAMTDSYLERVRPVLAGERPGKIGHDLKRIMTAIGKKGVALRGL 392

Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D M+ SY+L+  RS H +A++  + L    ++   +R                 A E 
Sbjct: 393 SFDTMVASYLLNPNRSDHSLATLVFELLGVKWEQGPGARGG-----NDGRETAMRGAAEE 447

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           ++++ QL   L P+L    LL ++  ++ P+I+V++ ME  G  +D D L ++  E+   
Sbjct: 448 AHLVWQLKEALLPQLGQAGLLPLFTTIEMPLIEVLASMEEVGFSVDTDQLSELGKELESQ 507

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L  LE  I+ L+GE FN++SPKQL ++LF +LK     +TKTG   +T  ++ Q     +
Sbjct: 508 LSRLESRIFALAGEHFNINSPKQLAEVLFQRLKLTPLKRTKTGY--STNVEVLQRLAVTH 565

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            +   +L +R L+K+KSTY D L     + + R+HT ++   T TGRL+S EPNLQNIP+
Sbjct: 566 ELPAEVLNYRSLAKLKSTYVDVLLRLAERTSGRIHTSFNQTVTATGRLSSSEPNLQNIPV 625

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +T++G++IR+AF++    +L+SADYSQIELRILAH+++   L   F    D+HR  AAE+
Sbjct: 626 RTEVGRRIRQAFVASEGHRLLSADYSQIELRILAHLSQDQALIAAFIAGGDVHRSTAAEV 685

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FGV  E V+ +MRR AK INF I+YG+SPF LA +L I + EAA YI RYF  + G+  +
Sbjct: 686 FGVQPEAVTVEMRRRAKVINFGIVYGMSPFGLAAELEISQEEAALYIDRYFQIYHGVKAF 745

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           I++T    R+ G+V T +GRR    E+ S   ++R + ER A+N PIQGSAAD+ + AMI
Sbjct: 746 IDRTICEARELGFVSTFWGRRRAIPELKSSDQTVRQLGERLAVNTPIQGSAADLIKVAMI 805

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           ++ + L   +L T+M+LQIHDEL+FEVPE E+  A ++    ME A      L VPLKV+
Sbjct: 806 AISRRLRSEQLETRMILQIHDELLFEVPEVELDVARRMATEEMEWAA----TLSVPLKVD 861

Query: 966 IKVSNNWQEEN 976
           I V  +W E +
Sbjct: 862 IGVGTSWAEAH 872


>gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994]
 gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994]
          Length = 909

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/978 (29%), Positives = 480/978 (49%), Gaps = 80/978 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + ++D   F +R+FYA P L  +H G P   + GF N +  L     K+  + +   
Sbjct: 3   QPTVTIIDTFGFFFRSFYALPPLKNRH-GFPTGLLTGFINFIASL----HKDHSSDYLIF 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D    +FR EI P+YKANR   PE L+ QLP+        G  ++   G+EADD+IA+
Sbjct: 58  ALDAKGPSFRAEIDPNYKANRSPAPEELIQQLPIAIDWIDKMGYKSLSQSGYEADDMIAS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
               A + GF V ++S DKDL QL+      L D + ++ ++  H  +K+G+ P + +  
Sbjct: 118 VVRQARQHGFLVRVVSHDKDLYQLIDDDRVVLVDAISKKVMNERHCDEKYGVHPCQFIDY 177

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GD+ DN+PG+ GIG  TA  LL ++G L+ +      +   + R  +  Y + A  
Sbjct: 178 QSLIGDTADNVPGVKGIGKVTAQKLLSQFGTLDTLYERIEEVTPPRIRGLLETYRDDAFR 237

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV L+ DV  T+      +   + P L                            P+
Sbjct: 238 SRELVRLKDDVFDTLDFSEFAMH-FDNPFL----------------------------PI 268

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
             D+   E            +  ++T +  +L +++   N   TPQ    E+ +      
Sbjct: 269 YDDLVHYE-----------MNAVLRTLKAKALFEESQPSN---TPQSEKTEKAEVPQCDS 314

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++  S   I +   +   ++ +      +F   T  +D      +  + ST D K     
Sbjct: 315 LDGCS-VLIDSDAALIALMETIADDALIAFDTETTGLDPSKDHLVGFSFST-DGKTGYYV 372

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GI 481
            +   ++ +         G    T+     ++  FE      IGHNIK+D   + R+ G+
Sbjct: 373 PMMHSYLGV---------GDQVSTEAAAKAIRLIFE---HRVIGHNIKFDLHFVTRFLGV 420

Query: 482 S-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
             +  + D M+++++ DS RS   + +++Q  L +       + K       ++     +
Sbjct: 421 DRLSIYADTMVLAWLTDSSRSL-AMDNLSQSLLHHEMIHFKDTVKKGENFASVAIEDACK 479

Query: 541 HAIENSNVILQLWLLLRPKLIV---EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           +A E++ +  +L+ +L+ +L++   ++ L     ++ P    +  ME  GI +D  +L+ 
Sbjct: 480 YAGEDAYITYRLYEVLKEQLLLKGGQEALDEAFDVEFPFTLTLLGMEKEGIAVDTAVLEL 539

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E++  + +L E I+   G  FNL+SPKQLG ILF  L  P G KTKTG   +T + +
Sbjct: 540 FKKEVAHEIATLTEQIHSACGTVFNLNSPKQLGVILFETLGLPHGKKTKTGY--STDEQV 597

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI-NKRTQRVHTFYSLASTMTGRLASL 716
            +    ++P+I  +L++R+  K+ STY + L     N  + R++T +    T TGRL+S 
Sbjct: 598 LEGLQFEHPMIPMLLQYREYHKLYSTYIEPLIALAQNDPSSRIYTSFVQTGTATGRLSSK 657

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIP+KT LG +IR AF++P  KKLI  DYSQIELR+LAH ++ T L   F    D
Sbjct: 658 NPNLQNIPVKTALGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNEGHD 717

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A  +FG    + + + R  AKT+NF ++YG+   +L+  L I   EA + I+RYF
Sbjct: 718 IHMQTAIALFG---AEDASRKRNIAKTVNFGLLYGMGQKKLSDTLGITTKEAKEIIERYF 774

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  Y        ++ GYVET+  RR ++D   S    ++   ER ++N   QGSA
Sbjct: 775 ETFPSVKGYFNGIVEQAKEIGYVETLLHRRRYFD-FGSATPMLKAAYERESVNTVFQGSA 833

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           +D+ + +M  +   +    L  +MLLQIHDEL+FEV  +     +   V +ME+     +
Sbjct: 834 SDLIKLSMNKIDTMIRTEGLRARMLLQIHDELIFEVDADVAEEYAVRFVDAMER----IL 889

Query: 957 NLRVPLKVNIKVSNNWQE 974
            LRVPLK ++ + N+W E
Sbjct: 890 ELRVPLKTSMHIGNHWGE 907


>gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 886

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/989 (31%), Positives = 494/989 (49%), Gaps = 118/989 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  +RAF+A        +  +GL  NA+  F NML  +L    K+  
Sbjct: 1   MNKK--LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQED 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR  +Y DYK  R K P  L  QLP +R   +  GI + E+  +EA
Sbjct: 55  PSHILVAFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173
           DDII T      + G+ V ++S DKDL QL S    +Y T     K E    +H+ +  G
Sbjct: 115 DDIIGTMAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + + ++AL GD  DN PG+  +G KTA+ L+QEYG++                EN+
Sbjct: 175 VTPTEFIDMKALMGDPSDNYPGVAKVGPKTASKLIQEYGSV----------------ENL 218

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
             + +  + S+                           L   L A +   L+ +   T  
Sbjct: 219 YYHVDEMKKSK---------------------------LKENLIAGKDNALLGKKLATIK 251

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
           CD+    PV + ++    +G  ++        +   +F +   Q  ++   +T       
Sbjct: 252 CDS----PVEVTLDDLSYEGSNVDDLRRFYEKMNFRRFLADLAQKGELTENKT------- 300

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    +    Y  +         + +L      +F +     +   +     A+  
Sbjct: 301 --------EVKKQDYVVLSADN-----LDQLPKAAEVTFYLAMFGDNYHLADFAGFALKI 347

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             +                   S+D            S LK+  E+    K   ++K   
Sbjct: 348 GGET----------------FVSRDVFLLQE------SPLKEMLEDSAVQKNVFDLKRTT 385

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKS-SI 528
             L+R GI   G   D++L SY++D+ ++S+D+  + Q +  Y  K   E+    K+  I
Sbjct: 386 YGLYRLGIKAEGLSFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDLEVYGKGKNAKI 445

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D+    H    +  I  L   L  +L   +   +Y+ ++ P   V+++ME+ GI
Sbjct: 446 PAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQDDLYDSIELPTARVLAKMEMNGI 502

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++    LK++  + +  L  LEE IY  +GE+FNL+SPKQLG ILF KL  P   KTKTG
Sbjct: 503 KVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNSPKQLGVILFEKLGLPVIKKTKTG 562

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ ++       +P++ +ILE+RQ+SKI+STY   L + I++R  R+HT Y    T
Sbjct: 563 Y--STSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQTLT 620

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP +T+ G++IR+AF+   P   + S DYSQIELR+LAH++    +
Sbjct: 621 ATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNM 680

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+   DIH   A +IF ++ +++V+   RR AK +NF I+YGIS + L+  L I R 
Sbjct: 681 QEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRK 740

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I  YF ++PGI  Y++      R+ GY ETI  RR +  +I++   ++R+  ER 
Sbjct: 741 QAKEFINEYFDQYPGIQAYMDWAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERT 800

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+HDEL+F+VP +E+ T  +I+  
Sbjct: 801 AINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPS 860

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    + L VPL  +    ++W E 
Sbjct: 861 VMQAA----VKLDVPLVADASWGHDWYEA 885


>gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi]
 gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi]
          Length = 1085

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1024 (31%), Positives = 525/1024 (51%), Gaps = 90/1024 (8%)

Query: 4    ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            E  + LVDG+  + RA++ TP L+   +G P NAI  F   L  +L++   +    H A+
Sbjct: 93   EKKILLVDGTPLVVRAYFGTPPLT-SSNGTPTNAILTFAKSLIAILKSDEFD----HVAI 147

Query: 64   IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             FD    + R  I  DYKANR    + L  Q P+ +L  +  G+  I   GFEADD+IAT
Sbjct: 148  FFDSGKPSIRKSISSDYKANRKPTEDNLKKQFPICKLLAEKMGLKVISKDGFEADDLIAT 207

Query: 124  YTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
                A+ E F  + ++S+DKDL  L      L D + ++K+ ++ +I K+ +PP+ +   
Sbjct: 208  VARQAKDEKFNSIVVVSSDKDLHCLSDTNLTLLDPMTKKKLTMDDIIGKYELPPKLIPEF 267

Query: 183  QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS-RIKQKKRRENILEYAETAR 241
             AL GD+ DNI G+ GIG K A  LL++YG++  IL N      +KK RE I    +  +
Sbjct: 268  LALVGDTADNIKGVKGIGKKKAVSLLEQYGSISEILNNLDDENMEKKSREAIKSNIDDLK 327

Query: 242  LSRKLVMLRTDVPITIPLEHLILEDC-----NGPRLISFLKALEFTKLINRVATTYDCDA 296
            LS +LV L  +VP+   L+   ++           LI  L+ LE   +I ++    D   
Sbjct: 328  LSLRLVALDEEVPLDYSLQDFQVDQSSLDFSQNEELIKMLEDLEINSVIKQLKKETDKKE 387

Query: 297  ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               +         E+    + +E      + + + S +SD +                  
Sbjct: 388  KTTKSKSKKKEVIES---VVLSEEMSSADVASLKLSHVSDDSKIG--------------- 429

Query: 357  KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                  +    Y  I+N K++  ++++++  G+  F      +   +     I+      
Sbjct: 430  ----KIVKASEYNIILNEKELDSFIEQVKISGNVCFSTEICLLSLHNPVMAGISFCISPG 485

Query: 417  KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLK-KFFENEHFLKIGHNIKYDK 473
                    +  ++        +      + KE  ILS ++ +  EN + LKIGHNIKY  
Sbjct: 486  --------QAYYLPFFKGGKVEFLDSVNILKESPILSKVRTEIMENPNILKIGHNIKYHI 537

Query: 474  LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-------YTRKEILKSRKS 526
             +L  YG++++ F+DIM+MSYVL+ G+  H++  I +  L           KE+L   K 
Sbjct: 538  KMLANYGVTVKNFDDIMVMSYVLNCGKHGHEMDEIVENVLLLDPKEHIIPEKEVLGIGKK 597

Query: 527  SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
             + + +     V   A +++++  Q + +L+  L    KL   YE ++KP+++ ++ +E+
Sbjct: 598  KVTLMEADIVSVVHFACQHADLTKQAYDVLKSALDKSPKLTQFYEGIEKPLVETLAGIEM 657

Query: 586  TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG--------------------------- 618
             G+ +D+  L ++  E  + + ++   I + +G                           
Sbjct: 658  KGVFMDEPALVKMENEYREKIKAIGNKIREDAGYPTIDEDIEIPTSEEEIESMIIEMDEM 717

Query: 619  -----EKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
                 E+FN++S +QLG ++F KL        KTK G +   A+ L+++    + I K+I
Sbjct: 718  KQEASEEFNINSNRQLGQVIFEKLGIGTKLRKKTKVGDYILNAEVLQKLAAEGHSIAKHI 777

Query: 672  LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
            LE+R L+K+ STY   L  HIN  T+R+HT +  A T+TGRL+S+ PN+QNIP++T  G+
Sbjct: 778  LEYRALTKLYSTYISGLRQHINPYTKRIHTTFQNALTVTGRLSSVMPNIQNIPVRTAEGK 837

Query: 732  KIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            +IRR FISP     ++  DYSQ+ELRILAHIA I  L   F+ + D+H + A+++F V +
Sbjct: 838  QIRRCFISPSDDYVIMKVDYSQVELRILAHIANIPVLKNAFKENKDVHAITASQVFNVPL 897

Query: 791  EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            ++V    R  AK INF IIYG+S F L+ ++ +    A  +I++YF ++PGI  Y+ KT 
Sbjct: 898  DQVDKSTRNKAKAINFGIIYGMSEFGLSKRIGVDTQAAKSFIEQYFKQYPGIKNYMTKTI 957

Query: 851  NFVRQNGYVETIFGRRIHYDEINSPKSSIR-NINERAAINAPIQGSAADITRRAMISVHK 909
             F R++GYV T+F RR     I       + +  ER +IN PIQG++ADIT+ AM S+HK
Sbjct: 958  EFCRKHGYVNTLFNRRCWIPGIEDQGFGGKSSFGERTSINTPIQGTSADITKIAMNSLHK 1017

Query: 910  SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC-LPKINLRVPLKVNIKV 968
            + ++  L T+M++Q+HDE+VFEVP++E+ T   II   ME A      N  VPL V   V
Sbjct: 1018 AFQEKGLRTRMIIQVHDEIVFEVPKDEVETVEPIIKELMEGAAFFGGTNFTVPLTVEATV 1077

Query: 969  SNNW 972
             + W
Sbjct: 1078 DSKW 1081


>gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1040

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/1043 (27%), Positives = 489/1043 (46%), Gaps = 88/1043 (8%)

Query: 6    HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG S  +RAFY+ P  + R   G+  NA+ GF +ML  +L+  +     +H    
Sbjct: 5    RLLVLDGHSLAFRAFYSRPPENFRTTTGVYTNAVHGFMSMLLAMLRREK----PTHIGAA 60

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD    +FR +IYPDYK  R + P   L Q+  ++    A GI  + ++  EADDI+AT 
Sbjct: 61   FDLSRHSFRTDIYPDYKGGRAETPPEFLGQIENIQRLLDALGIKWLTMENVEADDILATL 120

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEHVIKKWGIPPEKMV 180
                + +G  V + S D+D  QL+  +T +    ++  +  ++  + V  K+G+ P +  
Sbjct: 121  ATQGKAQGMQVLVSSGDRDTFQLIDESTTVLYPGHNAAQTTRMTPQAVKDKYGVWPAQYP 180

Query: 181  CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             + AL G+  DN+PG+P +G K+AA  + +YG LE IL +   +K  KR EN+  + +  
Sbjct: 181  EVAALVGEKADNLPGVPLVGEKSAAAWINQYGGLEGILAHRGELKG-KRGENLRAHVDDV 239

Query: 241  RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              +R+L  LRTD+ + + L+ L     +   + +    LEF ++  +    +        
Sbjct: 240  LRNRELNRLRTDLHLPLQLDDLRWRGMDVSAVDAVCAELEFKEMRRQFLAFFGVSGGASG 299

Query: 301  PVVLDINTTENKGI---AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF------ 351
             +    +   + G+   +++T     +  + +   SL++   + + +   +  F      
Sbjct: 300  SMPGFASPGFSGGVGVDSVDTGAVDMSASRGASRDSLAEPQPEASLDFGSRHGFGIEPHP 359

Query: 352  --------------LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
                           E L        +  +   + N       +  L      +    T 
Sbjct: 360  VIHRLESDFQAGELREWLGLGQAPHESEIAVWAVGNIGVNAPSIDWLFLAKHVAIPEGTT 419

Query: 398  T----MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG----------KN 443
                     +   +A   S  + ++ T           S   +  S             +
Sbjct: 420  GETAAKSPTNPSGVASGDSEANPREVTGELTAKPGNGASGGGTAASLALFREEAVLVTPS 479

Query: 444  TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSS 502
            TL  E  + L+ FF  E+   + +N K  +  L  YG  + G  +D+ L+ Y+ D   S 
Sbjct: 480  TLRPESENVLRDFFAAENRTVVVYNAKALRHALRAYGWELSGTVQDVNLLDYLADPDASR 539

Query: 503  HDIASIAQKWLSYTRKE---ILKSRKSSIPID--------------------------KI 533
               A++ ++ L ++  E    +      +  D                           I
Sbjct: 540  LKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAVTASTGSKDISGGI 599

Query: 534  SDSQVQEHAIENSNV---ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                + E  +  +     +L +  +L  ++   ++  +   ++ P+  ++ +ME TGI +
Sbjct: 600  PLPSLPETLVNQAKYALSLLDMLPILTEQVKYRRVGSLL-DMELPLSRLLERMEDTGIAV 658

Query: 591  DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            D+ LL++   E+S  +   E   ++  G + NLSSPKQL D+LF +L  P   KTKTG  
Sbjct: 659  DEGLLQRFDQELSSEVKRTETAAFEAIGREVNLSSPKQLQDVLFNQLGLPPTRKTKTGYT 718

Query: 651  KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
                   E      +P ++ +L +R  SK+      +L + I     R+HT +      T
Sbjct: 719  TDAKALEELALYNPHPFLQALLYFRDRSKLL-QIVRNLGDRIAPDG-RIHTTFGQTVAAT 776

Query: 711  GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
            GRL+SL+PNLQNIP +TD G +IR  FI+  P   L++ADYSQIE+RI+AH++    L  
Sbjct: 777  GRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIA 836

Query: 770  VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
             F++  D+HR VAA +FGV  E V+   R H K  ++ + YG+S F LA QLRI + EA 
Sbjct: 837  AFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQGEAK 896

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
              ++ YF RF  + +Y+E   +  R+ GY ET++GRR +   + +    +     RAA+N
Sbjct: 897  HLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARRAALN 956

Query: 890  APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            APIQGSAAD+ ++AM+ V  ++    L +++LLQIHDELVFEV   E+    +++  +M 
Sbjct: 957  APIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVTEAMT 1016

Query: 950  KACLPKINLRVPLKVNIKVSNNW 972
                  + LRVPL+V++ V  NW
Sbjct: 1017 SV----VELRVPLEVSVGVGANW 1035


>gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr]
 gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr]
          Length = 908

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/979 (33%), Positives = 501/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVLKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP+YKA R   P  L+PQ+  ++       IP  EI+G+EADDI+
Sbjct: 56  IIAFDSEVPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIEGYEADDIL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   AEK  +   IIS DKDL+Q +S    +         +++ E+VIKK+G+   ++
Sbjct: 116 ASFAKKAEKNNYLTYIISPDKDLLQTMSEYIKILKIENNSFVEMNNEYVIKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGSKGAANLLREFKTLKGIYSNLELI-NKKHQEILIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS  LV L  ++ I   +E+  L++     +IS  +      LI              
Sbjct: 235 AFLSYDLVSLEENLQIP-EIENFYLKNF-SEEIISLFEKHSAVALIK------------- 279

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                    T  K I  + E       +     SL +Q     S  T   +  E      
Sbjct: 280 ---------TYKKDILKQKE-------ENLGQKSLFEQEPITKSLNTLNTIDTE------ 317

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I   K++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 318 -----NVKYHSITTKKELDNLIESLKQAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      F++ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKFYIEKHYIIQKFNNLFKS-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G S +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  + L  +   ++ P   V+ +ME  GI +D+  LK+
Sbjct: 477 ATSYSCEDADITFRLFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N+++ R+++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKHRRIAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HIETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSAIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V    +  K+ +K+LLQ+HDE++ E P +E     +I+   ME A      
Sbjct: 834 DIMKIAMIKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
 gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
          Length = 875

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/981 (32%), Positives = 500/981 (50%), Gaps = 113/981 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+ +  + +    +
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-EEGIHTNAIYGFVNMLLKMKEEIKPD----Y 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD+
Sbjct: 55  IVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAISIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AEK+G  V I++ DKD +QL +    +  T K     E  D   +I+++G+ P
Sbjct: 115 IGTLSVFAEKKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + ++ L GDS DNIPG+PGIG KTA  L++EY ++E +L                E 
Sbjct: 175 KEFIDVKGLMGDSSDNIPGVPGIGEKTAFKLIKEYKSIETVL----------------EN 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  R                           G +L   L       + ++   T  C+ 
Sbjct: 219 IENIR---------------------------GKKLKENLHEYREQAIFSKKLATIMCN- 250

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V ++I+  E K              +  +F SL ++  K N E+           
Sbjct: 251 -----VPIEISLEEIKSKEEYNINKVRELFQRLEFKSLMNKVGKSNEEE----------- 294

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     SY  IV+ ++ +     +         +  +  D      +  + S + +
Sbjct: 295 ----TVEEEISYKNIVSIEEFKGLKDNIIEYKENKLYLYFELED-----IVLFSKSRI-K 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               SFK E   ID         T      +E +   K+ FE++   KI ++ K  + VL
Sbjct: 345 ILYVSFKDEVYRIDF-------ETLLKNTKEEFIEVCKEIFESKEIKKITYDSKNPRTVL 397

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
            + G+   G   DI L +Y++D  R  ++I+S+A ++L                   I+ 
Sbjct: 398 RKLGMEFNGINFDINLAAYLIDPVRKEYEISSLASEYL----------------FKNINR 441

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
              ++  I+  N++ +L+ +L  K+  + +  +  ++++P+ + +S ME  G ++D+++L
Sbjct: 442 ED-EDLKIKEVNIMPKLYKVLEEKIKDQDIEELLYKIEQPLTETLSAMETEGFKVDKNIL 500

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            Q+  +    + S +  IY +S E+FN++SPKQLG ILF KL  P   KTKTG + T A+
Sbjct: 501 LQLEKKFKGEIESTQSEIYSMSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAE 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++    +PII  I  +RQL+KI STY + L   I++  + +H+ ++   T TGRL+S
Sbjct: 560 VLDKLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDEDGK-IHSNFNQTVTATGRLSS 617

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPIK ++G++IR+ FI       ++SADYSQIELR+LAHI+    +   F   
Sbjct: 618 TEPNLQNIPIKYEMGREIRKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEH 677

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+E+F V I++V+P MR +AK +NF I+YGI  F L+  L I R EA  YI  
Sbjct: 678 DDIHTKTASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDA 737

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y  R+P +  Y+E       Q GYV TI  RR +  E+ S    ++   ER A+N+PIQG
Sbjct: 738 YLERYPNVKIYLENIVEEAIQKGYVTTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM++VH+ L++    + ++LQ+HDEL+  V ++E+     ++   ME+    
Sbjct: 798 SAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKREMEQV--- 854

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L+V L V+I + NNW E 
Sbjct: 855 -LELKVGLDVDINIGNNWYEA 874


>gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A]
 gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A]
          Length = 986

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1029 (28%), Positives = 496/1029 (48%), Gaps = 104/1029 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           K+  L LVDG S  +R+FYA            DG P +   GF   L     ++ K    
Sbjct: 5   KKPTLLLVDGHSLAFRSFYAFSKGGEGGLTTKDGFPTSVTYGFLKSLL----DNCKSIEP 60

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT-QAFGIPAIEIQGFEA 117
               + FD    TFR++  P+YKANR   P++    L  +     ++  +   +  G+EA
Sbjct: 61  KGVTIAFDTAEPTFRHKEDPNYKANRDVAPDIFFQDLDQLEEILKESLNLSICKAPGYEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE---------EKIDIEH 167
           DD++ T    A ++G++V I+S D+DL QLV          +           + I+ + 
Sbjct: 121 DDVLGTLANDAAEKGWSVRILSGDRDLFQLVDDERDIAVLYMGGGPYAKSGSPKLINEKG 180

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--- 224
           V +K G+ P K++ L+ALTGDS DNIPG+ G+G KTA  LL E  +L+ +  +   +   
Sbjct: 181 VREKLGVNPNKVIDLKALTGDSSDNIPGVKGVGPKTAINLLNENLDLDGVYKSLQELEKE 240

Query: 225 --KQKK------RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
             K K+       R  +    + A LS+KL  +   +PI   + +  LE  N  +L   L
Sbjct: 241 GEKAKRGAIKGAVRLKLKADKDNAYLSKKLAEILIKIPIDPKV-NYNLEGINESKLAENL 299

Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
           + LE   L  +V+T                     K I  +  + +     +S+  ++++
Sbjct: 300 ERLELHSLSKQVST--------------------FKAIFSKDGLSKKDLNPSSKEINIAN 339

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI----GSASF 392
             +K +   T                I       I N +++  +V ++          + 
Sbjct: 340 DKTKNSELST----------LNETKEIPKIEPKIIDNLEELNNFVAQIMKHTDSTKPIAI 389

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK-----NTLTK 447
              T +++ F ++ + +     +   D       ++I +     +    K         +
Sbjct: 390 DTETTSLNPFKAELVGLGFCFGESLKDI------VYIPIGHQNKEGDLIKINQINQLKIE 443

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
           E++  L+ +F +    K   N KYD+L+L R+GI + G   D +L  Y+ D+    H + 
Sbjct: 444 EVIFALQDWFSSNENHKTLQNAKYDRLILLRHGIILNGVVIDTLLADYIFDAT-LKHSLD 502

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE--K 564
            IA +   +  K      K       +       +   +  +  +L ++   +L     K
Sbjct: 503 EIAYREFGFKPKSFSDVVKKGEDFSYVDIKSASMYCGMDVYLTRKLAIIYINRLKETSTK 562

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L+++ + +++P+  V++++E TGI ID   LK +S E++K L ++E+ +Y+++G +FNLS
Sbjct: 563 LINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKKLNTIEKEVYNIAGSEFNLS 622

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG++LF KL        KT    +T   + +    D+PI+K I+E R +SK+ +TY
Sbjct: 623 SPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLEKLESDHPIVKMIIEHRTISKLLNTY 682

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D+LP  I K T RVHT ++ A T TGRL+S  PNLQNIP++T+  ++IR+AF+     K
Sbjct: 683 VDALPKLIEKETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPQKDWK 742

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+SADYSQIELRIL H++    L   +  + D+H + A  +F    + +    RR  KTI
Sbjct: 743 LLSADYSQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKLLF--EKDAIDADERRIGKTI 800

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF +IYG+   R A    +   EA  ++ ++  R+P +  ++E  +      G+VET+ G
Sbjct: 801 NFGVIYGMGAQRFARSTGVSLIEAKYFLSKFKERYPAVFNFLEYQERLALSQGFVETLLG 860

Query: 865 RRIHY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           RR ++                  D   + ++ +     RAA NAPIQGS+ADI + AMI 
Sbjct: 861 RRRYFHFNKNGLGRLLGTPPNEIDLTTARRAGMEAQQLRAAANAPIQGSSADIIKLAMIQ 920

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           +H +L +  LA K+LLQ+HDELV EV  +++     ++ ++ME A    + L VPL V  
Sbjct: 921 LHSALRETGLAAKILLQVHDELVLEVNPKDLEETKLLVKNTMENA----VKLSVPLIVET 976

Query: 967 KVSNNWQEE 975
            V  NW E 
Sbjct: 977 GVGVNWMEA 985


>gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 780

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/846 (32%), Positives = 431/846 (50%), Gaps = 90/846 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNL-ENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL   G   + +  N  ++        K     + E+ E
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIRGAKTLAAKLEEHRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +   L+     LEF   I  +          
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDTLMELYAELEFKSWIEDLQR-------- 291

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                                    +   E T ++  +E  +  
Sbjct: 292 --------------------------------------DAKRAGQELTVEEPTVEDRE-- 311

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                   +Y  I+       W++KL+     +F   ++  DA  ++ + ++ +     +
Sbjct: 312 -------AAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFAIQTH-E 363

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   ++ +     +D+         +L  LK   E+    K+G + K+   +L  
Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414

Query: 479 --------YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
                    GI ++G   D +L SYVLDS  + HD  S+  K+L++     +EI      
Sbjct: 415 CAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585
            +  D+I+  Q   +A E +++ L+L  +   +L     L  V   ++ P++ V++++E 
Sbjct: 475 QLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLARIER 534

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT
Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TGQ  T    L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  
Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           A  +TGRL+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+  
Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R
Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774

Query: 826 SEAADY 831
            ++  Y
Sbjct: 775 KQSQAY 780


>gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 870

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/980 (29%), Positives = 478/980 (48%), Gaps = 124/980 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG S + RAFY  P L+   +GL  NAI GF N+L+K+L+  R +    +  V F
Sbjct: 4   KIVLIDGHSILNRAFYGVPDLTNA-EGLHTNAIYGFLNILFKILEEERPD----YLTVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++++ DYK  R  + E L  Q+P+++   +A  I  +E +G EADD++ T  
Sbjct: 59  DVHAPTFRHKMFSDYKGTRKPMAEELRQQVPVMKEVLRAMKIKIVEQEGLEADDLLGTIA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
            I E+ G  V I+S D+DL+QL +    +     +      E      V  ++ + P++ 
Sbjct: 119 GIGERAGMDVVILSGDRDLLQLATDHVKIRIPKTKQGKTEIEDYYAADVKARYQVTPQEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD+ DNIPG+P IG KTA  ++ EYG++EN   +                   
Sbjct: 179 IDLKALMGDASDNIPGVPSIGEKTATKIITEYGSVENAYAHV------------------ 220

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                    E+   PR    LK       ++++  T + +A   
Sbjct: 221 -------------------------EELKPPRAAKALKEHYDKAQMSKILATIEVNAPIS 255

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             +          G A E         +  QF +L                 L R    +
Sbjct: 256 YELSEAKIGNLYTGEAYE-------YFQKLQFKNL-----------------LGRFDVEA 291

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +     +++ ++ + +  ++   +    G  +F              + ++    ++   
Sbjct: 292 KGNQIENAFVRVTDKQQAEELFARA---GKEAF--------------VGVSFGKEEKDAV 334

Query: 420 TSFKVETIFIDLSVHTSQDS----TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             F   + F  + +  S+        +  LT E L  L         +    ++K     
Sbjct: 335 PLFSHSSGFGSVGLAFSEKEIYTIVAEGELTMEDLFSLVGTLAKTTVV-ALFDVKAALSY 393

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +           D+ + +Y+L+  +S +    +A + LS    E                
Sbjct: 394 VRIE--DPESCFDVGIAAYLLNPLKSDYTWLDVAAEHLSLLIDE---------------K 436

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++    +   + VI     +L  K+       ++  ++ P++  +  ME  G++++ + L
Sbjct: 437 TEGYCRSCYEAYVIWAAAAVLEEKMKESGTEELFRTIEMPLLFTLFAMEQAGVRVEAEAL 496

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +    ++   ++ LE+ IY  +GE FN++SPKQLG ILF KL+ P G KTKTG   +TA 
Sbjct: 497 RLYGEQLGTKIVELEKEIYAQAGEAFNINSPKQLGVILFEKLRLPHGKKTKTGY--STAA 554

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+      + P+++ ILE+RQL+K+KSTYAD L N+I     R+H  ++   T TGR++S
Sbjct: 555 DVLDKLAPEYPVVEKILEYRQLTKLKSTYADGLANYICADG-RIHGKFNQTITATGRISS 613

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIP++ +LG+ IR+ FI       + ADYSQIELRILAH +    L   +  + 
Sbjct: 614 TEPNLQNIPVRMELGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAK 673

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR+ A+++F    ++V+   RR+AK +NF I+YGIS F L+  L I R EA++YI RY
Sbjct: 674 DIHRITASQVFHTPFDEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASEYIDRY 733

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +PGI ++++ T    ++ GYV T+FGRR    E+ S     R+  ER A+NAPIQG+
Sbjct: 734 FETYPGIKKFLDDTVAHAKEMGYVVTLFGRRRPVPELASSNFMQRSFGERVAMNAPIQGT 793

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI VH+ L + K+ ++++LQ+HDEL+ E  EEE+    +I+   ME+A    
Sbjct: 794 AADVMKIAMIGVHRELTERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAA--- 850

Query: 956 INLRVPLKVNIKVSNNWQEE 975
             L VPL+V++    NW E 
Sbjct: 851 -QLDVPLEVDMHTGRNWYEA 869


>gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
 gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
          Length = 908

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/979 (33%), Positives = 500/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVLKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP+YKA R   P  L+PQ+  ++       IP  EI+G+EADDI+
Sbjct: 56  IIAFDSEVPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIEGYEADDIL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   AEK  +   IIS DKDL+Q +S    +         +++ E+VIKK+GI   ++
Sbjct: 116 ASFAKKAEKNNYLTYIISPDKDLLQTMSEYIKILKIENNSFVEMNNEYVIKKFGINSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGSKGAANLLKEFKTLKGIYSNLELI-NKKHQEILIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS  LV L  ++ I   +E+  L++     +IS  +      LI              
Sbjct: 235 AFLSYDLVSLEENLQIP-EIENFHLKNF-SEEIISLFEKHSAVALIK------------- 279

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                    T  K I  + E       +     SL +Q     S  T   +  E      
Sbjct: 280 ---------TYKKDILKQKE-------ENLGQKSLFEQEPITKSLNTLNTIDTE------ 317

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I   K++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 318 -----NVKYHSITTKKELDNLIESLKQAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      F++ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKFYIEKHYIIQKFNNLFKS-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G S +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  + L  +   ++ P   V+ +ME  GI +D+  LK+
Sbjct: 477 ATSYSCEDADITFRLFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N+++ R+++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKHRRIAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F    ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HVETASKLFKTEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSAIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI V    +  K+ +K+LLQ+HDE++ E P +E     +I+   ME A      
Sbjct: 834 DIMKIAMIKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 896

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/977 (30%), Positives = 495/977 (50%), Gaps = 93/977 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L+L DG++  YR +Y   +      G P NA+ G   ML K  +   K     +    
Sbjct: 3   GKLYLFDGTAIFYRGYYGIDVTLTNSKGEPTNALFGTARMLSKFTRERMKNG--DYAIFA 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD   +T R+  Y  YKA R  +P+ L+ QL  V    +AFGI  + I G EADDI+AT 
Sbjct: 61  FDRKELTKRHVAYESYKATREAMPDALVAQLKDVPELVEAFGIKFLSIAGIEADDIVATA 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
                 +   V +I+ DKDL+QLV     +   V      +  D E V+ ++ + PE++ 
Sbjct: 121 AKKYRDKVDEVLVITGDKDLLQLVDDKVHILRFVTGLTDLDLYDREKVLSRYELEPERLH 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L +L GDS DNIPG+PGIG KTA  LL+EYG++E I  N  ++                
Sbjct: 181 ALLSLAGDSSDNIPGVPGIGIKTAQKLLKEYGDIEGIYANIRKLSPG------------- 227

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L +KL+  R+ + +++ L  L+  +     L            + ++    +       
Sbjct: 228 -LRKKLIDGRSSLELSMELVKLLDNEDLNIELDDIKYEGFRKNDLRKIFLKLE------- 279

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                             S   ++ N        F E       
Sbjct: 280 ---------------------------------FSSMMNEFNLTDKADDSFAE------- 299

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                D Y  + +  ++++  +KL +    +  + T ++D   +K + ++IS  +     
Sbjct: 300 ----IDGYRLVKSENELERLFEKLVSNPIFAIDLETSSLDPHCAKIVGVSISIDEGSG-- 353

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I ++     +S G       +L  LKK  E+     IG N+K+D  VL   G
Sbjct: 354 ------YYIPIAH----ESDGWQADRDYVLKNLKKLLEDRSTKIIGQNLKFDYSVLAVNG 403

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
           I  +    D ML +Y+L       ++  +A K+L Y     ++++K  +      K+   
Sbjct: 404 IHPVVPDFDTMLAAYLLSPDAKRFNLDELAMKFLGYKTIKFEDLMKKNQLGDDFTKVPLE 463

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +++E++++ L+L  +LR K+  ++L  ++ +++  +I V++ +E+ G+  D   LK
Sbjct: 464 EAARYSVEDADISLRLSSVLRKKIYEQELEEIFRKVELALIPVLADLELNGVYFDVPSLK 523

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S +  K L  + E ++DL+GE+FN +SP Q+G +LF +L      KTK G + T+A  
Sbjct: 524 NLSEKYGKILDKILEELFDLTGEQFNPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSADA 583

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE+I   ++P ++ +L++R+  K+KSTY DSLP  +NK T R+HT Y    T TGRL+S 
Sbjct: 584 LEEI-ADEHPAVQKLLDYRKYQKLKSTYLDSLPELVNKVTGRIHTSYHQTGTGTGRLSSS 642

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            PN+QN+PI+ + G++IR+  I      K++SADYSQIELRILAH+++   L   F+N  
Sbjct: 643 NPNMQNLPIRDEEGKEIRKCVIPQKKGWKIVSADYSQIELRILAHLSQDKQLLDAFKNDK 702

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H + A+ ++G+   +VS + RR  K INFSIIYGIS + LA++LRIP + A + I  Y
Sbjct: 703 DVHSLTASNLYGIKESEVSEEQRRIGKMINFSIIYGISSYGLASRLRIPTNVAEEMISNY 762

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  FP +  +I  T +  ++  +V T+FGR+    +  +   ++    ER AIN PIQG+
Sbjct: 763 FKAFPEVRAFIRDTISEAKEKCFVRTMFGRKREIPQFKTKNRNVIQEGERIAINTPIQGT 822

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI ++  L++ ++ +  +LQ+HDE+V+E PE+EI    +I+   M +     
Sbjct: 823 AADIMKMAMIKIYNLLKEKEMESFAILQVHDEMVYEAPEKEIEKLKEILKEGMSEV---- 878

Query: 956 INLRVPLKVNIKVSNNW 972
           + L VPL + I V + W
Sbjct: 879 VELSVPLDIEISVGDYW 895


>gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268]
 gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268]
          Length = 938

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/973 (29%), Positives = 481/973 (49%), Gaps = 43/973 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + ++D   F +R +YA   L  K DG P   ++GF + +  L +  + +    +     
Sbjct: 3   TITIIDTFGFFFRLYYAMSGLKTK-DGKPSGMVSGFASFIANLSKEFKSD----YIIFAL 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++I P+YK NR   P  LL QLP+     +  G+ ++  +G+EADD+IA+  
Sbjct: 58  DSKGKTFRSDIDPNYKTNRQAPPPALLQQLPVCIEMIEKMGLYSLGREGYEADDLIASVV 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
                    + I+++DKDL QL+     +Y   K+     E  ++++G+ PE++V   A+
Sbjct: 118 KKYGA-THKINIVTSDKDLYQLIGENVKIYSHGKKMLYGREECLQRYGVYPEQIVDFLAI 176

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS DNIPG+ GIG K A  LL E+G+L+ I  N  R+ Q K+RE ++E  ++A +S++
Sbjct: 177 CGDSADNIPGVRGIGDKGAKKLLDEWGSLDEIYSNLDRLPQNKQREYLIEGKQSAYISKR 236

Query: 246 LVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           L  L  ++ I  PLE       N   ++   LK       +NR+ +       N   +  
Sbjct: 237 LATLYDELEIP-PLEDAKFPQQNPLFKIREILKDYA----LNRLLSALSLQEQNGLDLWG 291

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           +      K   +           +   S L      ++ + +         +        
Sbjct: 292 EGKGAGAKSSVLGAGGKGAGAESSRGGSILGAAVGGLDGQNSIPGGSACSEKNSESAFKT 351

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                 I +  ++ +  + ++     SF   T ++D+  +K +  + +  +++      +
Sbjct: 352 PFEPICITDAVELARLCESIDAETLVSFDTETTSIDSKSAKIVGFSFAFNEER-AYYVPL 410

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISM 483
              ++      S D+         I S  + +        +G N+KYD  +V + + I  
Sbjct: 411 AHSYLGAPAQISSDAA-----KAAIDSLFRGYV-------VGQNLKYDFEIVKNNFNIEP 458

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
              F D M+++++LD   ++  + SI+ ++L Y         K       +       +A
Sbjct: 459 PARFADTMVLAWLLDP-ANAVGMDSISPRYLGYETVHFGDVVKKGETFASVELDAATIYA 517

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E++ V L+L+  L+  L+   L  + + L+ P + V+ QM+  GI+ID +++K++    
Sbjct: 518 SEDAWVTLRLYFKLKG-LLEPALFKLAQELEFPFVRVLWQMQRCGIKIDVEMIKRLIGRN 576

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
            K+L +L + IY+L GE+FN++SP QLG +LF +L  P+  +TKTG   +T + + +   
Sbjct: 577 EKSLRALTDEIYELCGEQFNINSPAQLGAVLFERLGLPAAKRTKTGY--STDESVLKDLT 634

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             +P +  IL++R+L K++STY + L    +     RV + +    T TGRLAS  PNLQ
Sbjct: 635 ALHPAVGKILDYRELFKLQSTYCEPLLQLALADAQNRVRSNFLQTGTATGRLASKNPNLQ 694

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP +    + +R  F++     LIS DYSQIELR+LAH ++   L   F    DIH   
Sbjct: 695 NIPARGTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPALLAAFRADEDIHART 754

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A  IFG       P  R  AK+INF +IYG+   +L+  L I R+EA  YI+RYF  F  
Sbjct: 755 AISIFGDAQ----PAHRTIAKSINFGLIYGMGAGKLSDSLGIARAEAKGYIERYFAAFST 810

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I E+++  K+  + +GYV T+FGRR ++D  N+  + +    ER A+N   QGSAADI +
Sbjct: 811 IKEFLQSIKSDAKADGYVSTLFGRRRYFDFANARNNMVYASYEREAVNTKFQGSAADIIK 870

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           +AM+ +   L       +++LQIHDEL+FEV ++            M+ A     +L VP
Sbjct: 871 KAMVDISPLLNGE---ARLILQIHDELIFEVRDDLAQGFGARAQEIMQSAA----SLNVP 923

Query: 962 LKVNIKVSNNWQE 974
           LK ++ ++  W E
Sbjct: 924 LKTSLNIAKRWGE 936


>gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8]
          Length = 955

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/993 (27%), Positives = 477/993 (48%), Gaps = 77/993 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 11  NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 67  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + +I K+ + P +
Sbjct: 127 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKYKVTPAQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 187 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 245

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A 
Sbjct: 246 QVKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGAK 305

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                       N+    +    E+ ++
Sbjct: 306 ------------------------------------------ASNTSGAGESTNNEQNEQ 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIA 408
            S   +N    T I   +   +WV+    +++  G  +   ++D  D     A     + 
Sbjct: 324 DSSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVG 383

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H 
Sbjct: 384 HAWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHG 442

Query: 469 IKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            K    +L    + M     D  L  Y+      +  +   A+ +L     E  +  + +
Sbjct: 443 YKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGT 502

Query: 528 IPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +  D    +    EH + +  +I  L + L P +   +   +   ++ P+  V+  ME T
Sbjct: 503 LDFDDDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHT 562

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +      +TK
Sbjct: 563 GAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTK 622

Query: 647 TGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N   +R+H
Sbjct: 623 SGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIH 681

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILA 759
           T +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A
Sbjct: 682 TTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMA 741

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S + LA 
Sbjct: 742 DLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQ 801

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S     
Sbjct: 802 QLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVA 861

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+   E   
Sbjct: 862 REAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQ 921

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++ ++ME A    ++L VPL V+  + ++W
Sbjct: 922 VTELVRNAMEHA----VDLAVPLDVSCGIGSDW 950


>gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065]
          Length = 875

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/981 (32%), Positives = 496/981 (50%), Gaps = 113/981 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+    ++E    +
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM----KEEINPDY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD+
Sbjct: 55  IVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ DKD +QL +    +  T K     E  D   +I+++G+ P
Sbjct: 115 IGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L                E 
Sbjct: 175 KEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVL----------------EN 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +                           G +L   L       + ++   T  C+ 
Sbjct: 219 IENIK---------------------------GKKLKENLHEYREQAIFSKKLATIICN- 250

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V +D++  + K              +  +F SL ++  K + E+           
Sbjct: 251 -----VPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKSDEEE----------- 294

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     SY  IV+ ++ +     +            D    F  + I +   +  +
Sbjct: 295 ----TVEEEVSYKNIVSLEEFKDLKNNIIKYK------ENDLYLYFELEDIVLFSKSRVK 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +FK E   ID            N   ++ +   K+ FE++   KI ++ K  + +L
Sbjct: 345 TLYANFKDEVYKIDF-------EMLLNNTKEQFIEVCKEIFESKEIKKITYDAKNPRTIL 397

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
            + GI   G   DI L +Y++D  R  ++I+S+A ++L                   I+ 
Sbjct: 398 RKLGIEFNGIEFDINLAAYLIDPVRKEYEISSLASEYL----------------FKNINR 441

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  I+  N++  L+ +L  K+  + +  +  ++++P+ + +S ME  G ++D+D+L
Sbjct: 442 EDEFLR-IKEVNIMPNLYKVLEEKIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDIL 500

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            Q+  +    + S +  IY +S E+FN++SPKQLG ILF KL  P   KTKTG + T A+
Sbjct: 501 LQLEKKFKGEIESTQLEIYSMSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAE 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            L+++    +PII  I  +RQL+KI STY + L   I++  + +H+ ++   T TGRL+S
Sbjct: 560 VLDKLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDEDGK-IHSNFNQTVTATGRLSS 617

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPIK ++G++IR+ FI       ++SADYSQIELR+LAHI+    +   F   
Sbjct: 618 TEPNLQNIPIKYEMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEH 677

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+E+F V IE+V+P MR +AK +NF I+YGI  F L+  L I R EA  YI  
Sbjct: 678 DDIHTKTASEVFKVPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDA 737

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y  R+P +  Y+E       + GYV TI  RR +  E+ S    ++   ER A+N+PIQG
Sbjct: 738 YLERYPNVKLYLENIVEEAIEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM++VH+ L++    + ++LQ+HDEL+  V ++E+     ++   ME+    
Sbjct: 798 SAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEMEQV--- 854

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L+V L V+I + NNW E 
Sbjct: 855 -LELKVGLDVDINIGNNWYEA 874


>gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025]
 gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025]
          Length = 878

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/990 (32%), Positives = 485/990 (48%), Gaps = 128/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DGSS  YRAF+A        +   GL  NAI GF  ML  +++       
Sbjct: 1   MTNKKKLLLIDGSSVAYRAFFALYNQIDRFKNPAGLHTNAIYGFHLMLDHMMKRVE---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K PE    QLP +R    A G+   +++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLTALGVSYYDLENYEA 116

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+   +++++K 
Sbjct: 117 DDIIGTLDKLAENEDAYDVTIVSGDKDLIQLTDSNTTVEISKKGVAEFEEFTPDYLMEKM 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++ + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K +EN
Sbjct: 177 GLTPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEHGSLEAIYEHIDSFKTTKMKEN 236

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   E                                              +++   T 
Sbjct: 237 LINDKE-------------------------------------------KAFLSKTLATI 253

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + ++  +  G  ++  +     +   QF S  D +SK  + +       
Sbjct: 254 DTQA----PITITLDDIDYSGPQLDALVKFYDEMDFRQFRSQLDSSSKAENFEVSYTEVT 309

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E    +  +  +   Y +I+N                          +    + I +A  
Sbjct: 310 ELKPDM--FAPDQFFYFEILND-------------------------NYHTQEMIGLAW- 341

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                DD +    T    L+    +++  K   T                    ++ K  
Sbjct: 342 ----GDDQAIYATTDTSLLTHDLFKEALSKPIKT--------------------YDFKRG 377

Query: 473 KLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
           K++L   GI +     D  L  Y+L S   +++I++IA+ +    L        K  K +
Sbjct: 378 KVLLSHLGIDLLTASFDSRLAKYLL-STVENNNISTIARLYTDLPLETDDDVYGKGAKRA 436

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP   +    +  H  +  +V+L     +R KL     L +   ++ P+ +V+++MEI G
Sbjct: 437 IPEKNV----LLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLAKMEIAG 492

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L+ +       L +L + IYDL+GE FN++SPKQLG ILF KL  P  A  KT
Sbjct: 493 ISVRKETLQDMERANEIELQALTQEIYDLAGEAFNINSPKQLGVILFEKLGLPLSATKKT 552

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +     +PI+  ILE+RQ++K++STY   L + I+   + +HT Y    
Sbjct: 553 KTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSISFDGK-IHTRYLQDL 611

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+    
Sbjct: 612 TQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEH 671

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I R
Sbjct: 672 LIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGISR 731

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A +YI+ YF R+PGI  Y+++     R  GYVET+F RR    +INS   +IR+  ER
Sbjct: 732 KAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRSFAER 791

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + ++L+     ++MLLQ+HDE+V EVP  E+    +++ 
Sbjct: 792 TAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQKLVK 851

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME A    I L VPL  +      W E 
Sbjct: 852 ETMESA----IELSVPLVADENAGQTWYEA 877


>gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
 gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
          Length = 1040

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/1044 (27%), Positives = 484/1044 (46%), Gaps = 90/1044 (8%)

Query: 6    HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG S  +RAFY+ P  + R   G+  NA+ GF +ML  +L+  +     +H    
Sbjct: 5    RLLVLDGHSLAFRAFYSRPPENFRTTTGVYTNAVHGFMSMLLAMLRREK----PTHIGAA 60

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD    +FR +IYPDYK  R + P   L Q+  ++    A GI  + ++  EADDI+AT 
Sbjct: 61   FDLSRHSFRTDIYPDYKGGRAETPPEFLGQIENIQRLLDALGIKWLTMENVEADDILATL 120

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEHVIKKWGIPPEKMV 180
                + +G  V + S D+D  QL+  +T +    ++  +  ++  + V  K+G+ P +  
Sbjct: 121  ATQGKAQGMQVLVSSGDRDTFQLIDESTTVLYPGHNAAQTTRMTPQAVKDKYGVWPAQYP 180

Query: 181  CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             + AL G+  DN+PG+P +G K+AA  + +YG LE IL +   +K  KR EN+  + +  
Sbjct: 181  EVAALVGEKADNLPGVPLVGEKSAAAWINQYGGLEGILAHRGELKG-KRGENLRAHVDDV 239

Query: 241  RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA--- 297
              +R+L  LRTD+ + + L+ L     +   + +    LEF ++  +    +        
Sbjct: 240  LRNRELNRLRTDLHLPLQLDDLRWRGMDVSAVDAVCAELEFKEMRRQFLAFFGVSGGASG 299

Query: 298  -----------------NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
                             +++   +D++ +   G     E   + ++          +   
Sbjct: 300  SMPGFASPGFSGGVGVDSVDTGAVDMSASRGAGRDSLAEPQPEASLDFGSRHGFGIEPHP 359

Query: 341  INSEQTPQKLFLERLQK---LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
            +           E  +          +  +   + N       +  L      +    T 
Sbjct: 360  VIHRLESDFQAGELREWLGLGQAPHESEIAVWAVGNIGVNAPSIDWLFLAKHVAIPEGTT 419

Query: 398  TMDAFH--SKPIAIAIS-------------TLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
               A    + P  +A               T    +  S     + + L    +   T  
Sbjct: 420  DETAAKSPANPSGVASGDREANPREVTGELTAKPGNGASGGGTAVSLALFREEAVLVTPS 479

Query: 443  NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS 501
             TL  E  + L+ FF  E+   + +N K  +  L  YG  + G  +D+ L+ Y+ D   S
Sbjct: 480  -TLRPESENVLRDFFAAENRTVVVYNAKALRHALRAYGWELSGTVQDVNLLDYLADPDAS 538

Query: 502  SHDIASIAQKWLSYTRKE---ILKSRKSSIPID--------------------------K 532
                A++ ++ L ++  E    +      +  D                           
Sbjct: 539  RLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAVTASTGSKDISGG 598

Query: 533  ISDSQVQEHAIENSNV---ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            I    + E  +  +     +L +  +L  ++   ++  +   ++ P+  ++ +ME TGI 
Sbjct: 599  IPLPSLPETLVNQAKYALSLLDMLPILTEQVKYRRVGSLL-DMELPLSRLLERMEDTGIA 657

Query: 590  IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
            +D+ LL++   E+S  +   E   ++  G + NLSSPKQL D+LF +L  P   KTKTG 
Sbjct: 658  VDEGLLQRFDQELSSEVKRTEAAAFEAIGREVNLSSPKQLQDVLFNQLGLPPTRKTKTGY 717

Query: 650  WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
                    E      +P ++ +L +R  SK+      +L + I     R+HT +      
Sbjct: 718  TTDAKALEELALYNPHPFLQALLYFRDRSKLL-QVVRNLGDRIASDG-RIHTTFGQTVAA 775

Query: 710  TGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+SL+PNLQNIP +TD G +IR  FI+  P   L++ADYSQIE+RI+AH++    L 
Sbjct: 776  TGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLI 835

Query: 769  QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
              F++  D+HR VAA +FGV  E V+   R H K  ++ + YG+S F LA QLRI + EA
Sbjct: 836  AAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQGEA 895

Query: 829  ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
               ++ YF RF  + +Y+E   +  R+ GY ET++GRR +   + +    +     RAA+
Sbjct: 896  KHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARRAAL 955

Query: 889  NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
            NAPIQGSAAD+ ++AM+ V  ++    L +++LLQIHDELVFEV   E+    +++  +M
Sbjct: 956  NAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVTEAM 1015

Query: 949  EKACLPKINLRVPLKVNIKVSNNW 972
                   + LRVPL+V++ V  NW
Sbjct: 1016 TSV----VELRVPLEVSVGVGANW 1035


>gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20]
          Length = 945

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/992 (29%), Positives = 470/992 (47%), Gaps = 94/992 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  +RAFYA P+ +     G   NA+ GF +M   LL N R     +H AV 
Sbjct: 24  RLLLIDGHSMAFRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLDNER----PTHVAVA 79

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR E Y +YK  R + P+  L Q+ L++   +A G+ A+   G+EADDI+AT 
Sbjct: 80  FDLPGGTFRTEEYAEYKGTRDETPQPFLGQVELIQQVLEAMGVTALTAPGYEADDILATL 139

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              A+ EG  V I S D+D  Q V+    +   VK      ++  + V +++G+ PE+  
Sbjct: 140 ATSAQAEGMEVLICSGDRDSFQTVTERCTVLYPVKGVSTLRRMTPQEVEERYGVTPERYP 199

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL G++ DN+PG+PG+G KTAA  L  Y  L+ ++ +A +IK  K  +++ ++ +  
Sbjct: 200 HLAALVGETSDNLPGVPGVGPKTAAKWLNLYDGLDGVIAHADQIKG-KAGQSLRDHLDDV 258

Query: 241 RLSRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             +R+L  L TD+ +  +P   L L   +   L    +ALEF  L  R            
Sbjct: 259 VRNRRLNHLLTDLDLGVLPRTDLRLVGADRSALARVFEALEFRTLHQR------------ 306

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                     ++   F+  SD      +E+      L  L+ +S
Sbjct: 307 -------------------------ALRILSFTDTSDHVEPGEAEEAGALNALSDLEIVS 341

Query: 360 QYPINNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                       +    + +W++  L   G        +         + +         
Sbjct: 342 LGHD--------LAAGQLAEWLETSLPADGD-------NGTRPLGVDVVGV--------- 377

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
               + +   + LS  +         +  E  + L +   +    K+  + K     L  
Sbjct: 378 LRPVEGDAALVSLSDGSRAVVVDLTEILPEDEAALARLLADVERPKLVADAKGSWHALSA 437

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR----------KSS 527
            G+++ G   D  L  Y+    + S+D+ ++ Q+WL      + +            +S+
Sbjct: 438 RGLTLDGVVADPSLAGYLCRPEQRSYDVDTLTQRWLGIDLAAVNEGGAGGDGGSGESQSA 497

Query: 528 IPIDKISDSQV-QEHAIE--NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
             ++ ++   V   H      +  +L L ++L  +++    L ++  L+ P+   ++ ME
Sbjct: 498 FDLEALTSEAVPASHLASAGRAAALLPLQVVLDEQMVARDALGLFTDLEMPVAATLTVME 557

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D  +L+    E+   +    E  Y  +G + NLSSPKQL  +LF +LK P   K
Sbjct: 558 DAGIAVDDAVLQIRQTELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMPKTRK 617

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTG                +P ++++LE R   K++ T  + L   I     R+HT + 
Sbjct: 618 TKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT-VEGLRKAIQPDG-RIHTTFQ 675

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAK 763
                TGRL+S +PNLQNIP + + G +IR AF        L++ADYSQIE+RI+AH++ 
Sbjct: 676 QTIAATGRLSSTDPNLQNIPARHEEGMRIREAFTVGEGYECLMTADYSQIEMRIMAHLSA 735

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F +  D+HR VAA + G+++E V+ Q R H K +++ + YG+S F LA QL I
Sbjct: 736 DQALIDAFRSGEDLHRYVAALVHGIDVEDVTAQQRSHVKAMSYGLAYGLSTFGLARQLGI 795

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
             ++AAD    YF RF  +H+Y+E      R++GY ET+FGRR +  ++ S     R + 
Sbjct: 796 DNADAADLRNAYFARFGKVHDYLESVVEQARRDGYTETMFGRRRYLPDLTSDNRQRREMA 855

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAA+NAPIQGSAADI ++AMI V  +L +  LA+++LLQIHDEL+ EV   E      +
Sbjct: 856 ERAALNAPIQGSAADIVKKAMIDVDSALTERALASRILLQIHDELLIEVAPGEAEAVENL 915

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +   M  A      L VPL V +     W+E 
Sbjct: 916 LKEQMGGAA----ELSVPLDVAVGRGRTWREA 943


>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
          Length = 908

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/981 (28%), Positives = 468/981 (47%), Gaps = 102/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q    L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H
Sbjct: 17  QTRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTH 72

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR+E YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+
Sbjct: 73  IAAAFDVSRQTFRSERYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 132

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE EG+ V +++ D+D +QLVS    +    K      +   + V++K+G+ P
Sbjct: 133 IATLATQAENEGYRVLVVTGDRDSLQLVSENVTVLYPRKGVSELTRFTPDAVVEKYGLTP 192

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++ N   ++  K  + + E+
Sbjct: 193 TQYPDFAALRGDPSDNLPGIPGVGEKTASKWIGEYGSLQALVDNVDSVRG-KVGDALREH 251

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                    L  +  +  +T                           L+  V      D 
Sbjct: 252 ---------LASVIRNRELT--------------------------DLVKDVPLAQTPDT 276

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             ++P   D        +           ++   F +L+    +++     +   LE  +
Sbjct: 277 LRLQPWDRDQIHRLFDDLEF-------RVLRDRLFETLAAVEPEVDEGFDVRGGALEAGE 329

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                                  W+ +  +       ++   + A+ +   A+AI + D 
Sbjct: 330 L--------------------AVWLAEHSSGKRFGLAVVGTHL-AYDADATALAIVSADG 368

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +                          TL  E  + L  +  +    K  H  K     L
Sbjct: 369 EGRY-------------------IDTATLDPEDEAALASWLADPGPPKALHEAKLAMHDL 409

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK--SSIPIDKI 533
              G ++ G   D  L +Y++  G+ S  +  ++ ++L    +     ++  S +     
Sbjct: 410 AGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRAENPEQQQLSLLDDTDG 469

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +D Q  +  +  +  +L L   L  +L       +   ++ P+  V++ ME  GI +D +
Sbjct: 470 TDDQAVQTLLLRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLAGMENAGIAVDLE 529

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L+ P   +TKTG     
Sbjct: 530 LLTELQSDFAHLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELEMPKTKRTKTGYTTDA 589

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                  +   +P ++++L  R  +++K T  D L N +     R+HT ++     TGRL
Sbjct: 590 DALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDG-RIHTTFNQTIAATGRL 647

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+AH++K   L + F 
Sbjct: 648 SSTEPNLQNIPIRTEAGRRIRDAFVVGDGYSELMTADYSQIEMRIMAHLSKDEGLIEAFN 707

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  VA+  FGV IE+V+ ++RR  K +++ + YG+S + L+ QL+I   EA D +
Sbjct: 708 TGEDLHSFVASRAFGVPIEEVTAELRRRVKAMSYGLAYGLSAYGLSAQLKISTEEAKDQM 767

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           ++YF RF G+ +Y+       R++GY  T+FGRR +  E++S    +R   ERAA+NAPI
Sbjct: 768 EQYFARFGGVRDYLMAVVEQARKDGYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPI 827

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI   K+++D  L++++LLQ+HDEL+FEV   E      +    M  A 
Sbjct: 828 QGSAADIIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQLEALARDKMGGA- 886

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
                L VPL+V++    +W 
Sbjct: 887 ---YPLDVPLEVSVGYGRSWD 904


>gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
          Length = 950

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/988 (28%), Positives = 475/988 (48%), Gaps = 70/988 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++     +    H
Sbjct: 11  TSRGTLLVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDAEHPD----H 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFRN + P YK  R   PE LL QLPL++    A G+  IE  G+E DD+
Sbjct: 67  LAVAFDVKGGTFRNTMLPQYKGTRDAAPEDLLTQLPLIQQMLDALGVTFIEKPGYEGDDV 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   + ++ G+   ++S D+D  QL++    +          + +  + V++K+ + P
Sbjct: 127 IGTLASMGDEAGYRTLVLSGDRDAFQLINNNITVLYPGHHFKDLKHMTPDAVVEKYHVTP 186

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+   L AL G++ DNIPG+PG+G   AA  +  YG L+ I+ +A  I  KK  E +   
Sbjct: 187 EQYPDLAALRGETADNIPGVPGVGDGFAAKWINLYGGLDQIIEHADEIGGKK-GEALRAN 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCD 295
            +  +L+R +  L  D+ + + +E L     +  +L      LEF  +  NRV  T++  
Sbjct: 246 IDQVKLNRSVNALVRDLDLGVSIEDLTFGQVDANQLNELFTKLEFGIRTKNRVLRTFNAG 305

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                 V  D           E+        +T       +  ++ N + T + L  ER 
Sbjct: 306 KPTNNLVPQD-----------ESSKLEIPEYETIDSPEALESWAQSNLQTTNKHLHDERE 354

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                 P        I +TK   +                            ++A S + 
Sbjct: 355 TAPKTTPSGFA----IDHTKKCAK----------------------------SVAHSWVL 382

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           Q +  S      +  L + +   +   N + +++ S L+   +  H   + H  K    +
Sbjct: 383 QVEGESKPGNAAYSSLMIASQGKAIRINHIDRDMASQLQTLLDEYHQSMVVHGYKEQSHL 442

Query: 476 LHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR-KSSIPIDKI 533
           L   G+ +     D  L  Y++     +  +   A  +L    +E  +S  + ++  D+ 
Sbjct: 443 LGSAGVKLPEPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHVEEQSESATQGTLDFDEP 502

Query: 534 SDS--QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +S  Q  +    ++ ++  L   L   L   +   + E ++ P+  V+  ME  G Q+D
Sbjct: 503 EESVQQKDDQLPRHTAIVGLLARNLSNSLDQREQFALLESVEIPVSRVLYGMEHAGAQVD 562

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + L  +  +++ +    +E  +  +G++ NL SPKQL  ILF  +      KTKTG + 
Sbjct: 563 MNRLMNMREQLASDANHAQETAWQYAGKRVNLQSPKQLQKILFEDMGLKPTKKTKTGSYT 622

Query: 652 TTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           T A  L+ +             +  +L  R+ +K+K     +L +  N    R+HT +  
Sbjct: 623 TNAAALQTLRDRSYDNDSACQFLDALLLHREKNKLK-QIVQTLIDATNGSDGRIHTTFEQ 681

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKI 764
               TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A ++  
Sbjct: 682 TVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGD 741

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F +  D H+ VA+ ++GV +++++   R H K +++ + YG+S + L+ QL I 
Sbjct: 742 EALIEAFRSGRDFHKYVASLVYGVPVDEITSDQRSHVKAMSYGLAYGLSTYGLSQQLGIK 801

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA    ++YF  F  +HEY+E   +  R+ GY ETI+GRR ++  + SP  ++R+  E
Sbjct: 802 PGEAESLKQQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAVRDAAE 861

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAA+NAPIQGSAADI + AMI    +L +  LA++++LQIHDELV E+   E   A+ ++
Sbjct: 862 RAALNAPIQGSAADIMKIAMIRADDALHESGLASRIILQIHDELVVEIAPGEAEQATALV 921

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +ME A    +++ VPL V+  + ++W
Sbjct: 922 KDAMEHA----VDMAVPLDVSTGIGSDW 945


>gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159]
 gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159]
          Length = 878

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/990 (32%), Positives = 483/990 (48%), Gaps = 128/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DGSS  YRAF+A        +   GL  NAI GF  ML  +++       
Sbjct: 1   MTNKKKLLLIDGSSVAYRAFFALYNQIDRFKNPAGLHTNAIYGFHLMLDHMMKRVE---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K PE    QLP +R    A G+   +++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLTALGVSYYDLENYEA 116

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+   +++++K 
Sbjct: 117 DDIIGTLDKLAENEDEYDVTIVSGDKDLIQLTDSNTTVEISKKGVAEFEEFTPDYLMEKM 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++ + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K +EN
Sbjct: 177 GLTPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEHGSLEAIYEHIDSFKTTKMKEN 236

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   E                                              +++   T 
Sbjct: 237 LINDKE-------------------------------------------KAFLSKTLATI 253

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + ++  +  G  ++        +   QF S  D + K  + +       
Sbjct: 254 DTQA----PITITLDDIDYSGPQLDALAKFYDEMDFRQFRSQLDSSPKTENFEVSYTEVT 309

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E    +  +  +   Y +I+N                          +    + I +A  
Sbjct: 310 ELKPDM--FAPDQFFYFEILND-------------------------NYHTQEMIGLAW- 341

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                DD +    T    L+    +++  K   T                    ++ K  
Sbjct: 342 ----GDDQAIYATTDTSLLTHDLFKEALSKPIKT--------------------YDFKRG 377

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
           K++L   GI +     D  L  Y+L S   +++I++IA+ +    L        K  K +
Sbjct: 378 KVLLSHLGIDLPTASFDSRLAKYLL-STVENNNISTIARLYTDLPLETDDDVYGKGAKRA 436

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP   +    +  H  +  +V+L     +R KL     L +   ++ P+ +V+++MEI G
Sbjct: 437 IPEKNV----LLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLAKMEIAG 492

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L+ +       L +L + IYDL+GE FN++SPKQLG ILF KL  P  A  KT
Sbjct: 493 ISVRKETLQDMERANEIELQALTQEIYDLAGEAFNINSPKQLGVILFEKLGLPLSATKKT 552

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +     +PI+  ILE+RQ++K++STY   L + I+   + +HT Y    
Sbjct: 553 KTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSISFDGK-IHTRYLQDL 611

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+    
Sbjct: 612 TQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWKESVLLSSDYSQIELRVLAHISGDEH 671

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I R
Sbjct: 672 LIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGISR 731

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A +YI+ YF R+PGI  Y+++     R  GYVET+F RR    +INS   +IR+  ER
Sbjct: 732 KAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFNIRSFAER 791

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + ++L+     ++MLLQ+HDE+V EVP  E+    +++ 
Sbjct: 792 TAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQKLVK 851

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME A    I L VPL  +      W E 
Sbjct: 852 ETMESA----IELSVPLVADENAGQTWYEA 877


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/981 (30%), Positives = 499/981 (50%), Gaps = 107/981 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++DG S +YRAF+A P L+ K +G+  NAI GF  ML K+ +  +   I + 
Sbjct: 1   MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKMKEEIKPNYIVT- 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR++ Y DYKA R K+P  L  Q P+V+       I   EI GFEADD+
Sbjct: 58  ---AFDKKAPTFRHKEYEDYKAGRAKMPSELNEQFPIVKEILNKLAINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ DKD +QL +    +    K     E  D   +I+++ + P
Sbjct: 115 IGTLSQFAEEKGIEVYIVTGDKDALQLATDNVKIVINKKGMSEKEIYDRNRMIEEYEVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++ L GD  DNIPG+PGIG KTA  L                IK+    EN+LE 
Sbjct: 175 TQFIDVKGLMGDKSDNIPGVPGIGTKTAFKL----------------IKEYGSIENVLEN 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E   +S K         +   L     +     +L +    +     +  + +  + D 
Sbjct: 219 VEN--ISGK--------KMKQNLIEYREQAIFSKKLATICTNVPIEIDLEEIKSKENYDI 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             +  +                        ++  F SL    +  ++++  +    +  +
Sbjct: 269 EGVRQL-----------------------FESLGFKSLIQNIASSDNQEESENNEEKIEE 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +   +N     I    ++   +  ++   +  F++     + +      I  +T+  
Sbjct: 306 INIKVESSN-----IETVDELSNLLSDIKD--TVYFQVECVNENVYSK----IEFNTIYI 354

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +++    V  I           +  KN    + L  +KK FE+E+  KI H+IK   ++L
Sbjct: 355 RNEEKIYVVNI-----------NKIKNENYDKYLELIKKLFEDENIKKISHDIKNIYVIL 403

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
            +Y I  + F  D  + +Y+L   +S + +  I  + LS    E  +  K          
Sbjct: 404 RKYDIDAKNFSFDTKIAAYLLQPSKSDYILRDIILEKLSINIHESDEESK---------- 453

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  I+ +  I +++  L+ ++    +  ++  ++ P++ V++ ME  G +ID+D L
Sbjct: 454 -------IKETYCIKEIYEKLQKEIKSANMEELFYNVELPLVKVLASMECEGFKIDKDRL 506

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++  +    + +LE+ I++ + E FN+ SPKQLG ILF KL  P   KTKTG + T A+
Sbjct: 507 TEIGEKFKVKIETLEKEIHEFADEDFNIKSPKQLGKILFEKLDLPVIKKTKTG-YSTNAE 565

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    +PII  I+E+RQ++K+ STY + L  H+     ++H+ ++   T TGRL+S
Sbjct: 566 VLEKLK-DSHPIISKIIEYRQITKLDSTYVEGL-KHVIDEDGKIHSSFNQTVTTTGRLSS 623

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPIK ++G++IR+ F+       + SADYSQIELR+LAHIA    L   F++ 
Sbjct: 624 TEPNLQNIPIKYEMGREIRKVFVPNNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHH 683

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A+E+F V+I++V+P MR +AK +NF I+YGI  F L+  + + R EA +YI  
Sbjct: 684 KDIHTITASEVFKVHIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDT 743

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+P + +YI++  +   Q+G+V TI  R+ +  E+ S    +R+  ER A+N PIQG
Sbjct: 744 YFSRYPNVKKYIDEIISKAEQDGFVTTIMNRKRYIPEVQSRNKIVRSFGERLAMNTPIQG 803

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + AM+ V++ L    L + ++LQ+HDEL+  V ++E+    Q++V  ME     
Sbjct: 804 SAADVIKLAMVHVYEELIKRNLKSTLILQVHDELILNVYKDELEEVKQMVVDKMEGVM-- 861

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
             NL VPL+ ++ V   W E 
Sbjct: 862 --NLLVPLEADVNVGTTWYEA 880


>gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
 gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
          Length = 950

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/993 (27%), Positives = 477/993 (48%), Gaps = 77/993 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 6   NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 62  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIA 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + +I K+ + P +
Sbjct: 122 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKYKVTPAQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 182 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A 
Sbjct: 241 QVKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                       N+    +    E+ ++
Sbjct: 301 ------------------------------------------ASNTSGAGESTNNEQNEQ 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIA 408
            S   +N    T I   +   +WV+    +++  G  +   ++D  D     A     + 
Sbjct: 319 DSSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVG 378

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H 
Sbjct: 379 HAWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHG 437

Query: 469 IKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            K    +L    + M     D  L  Y+      +  +   A+ +L     E  +  + +
Sbjct: 438 YKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGT 497

Query: 528 IPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +  D    +    EH + +  +I  L + L P +   +   +   ++ P+  V+  ME T
Sbjct: 498 LDFDDDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHT 557

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +      +TK
Sbjct: 558 GAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTK 617

Query: 647 TGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N   +R+H
Sbjct: 618 SGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIH 676

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILA 759
           T +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A
Sbjct: 677 TTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMA 736

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S + LA 
Sbjct: 737 DLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQ 796

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S     
Sbjct: 797 QLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVA 856

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+   E   
Sbjct: 857 REAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQ 916

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++ ++ME A    ++L VPL V+  + ++W
Sbjct: 917 VTELVRNAMEHA----VDLAVPLDVSCGIGSDW 945


>gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629]
 gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1]
          Length = 903

 Score =  727 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/981 (30%), Positives = 492/981 (50%), Gaps = 91/981 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG S + RA++  P L+   +GL  NA+ GF N+++K+L   + +    +  V F
Sbjct: 4   KLVLIDGHSILNRAYHGLPDLTN-SEGLHTNAVYGFLNIMFKILDEEKPD----YLTVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+ ++  YK  R  + E L  Q+P+++    A GI  +E +G+EADDI+ T +
Sbjct: 59  DVHAPTFRHRMFDAYKGTRKPMDEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLS 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
             AEK G  V IIS D+DL+QL +    +     +      E  +   VI+K+G+ P++ 
Sbjct: 119 VRAEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIENYNTADVIEKYGVTPKEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PGIG KTA  L+ +Y  +E +  +A  +K  +           
Sbjct: 179 IDVKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRA---------- 228

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              S+ +V       ++  L  +IL   + P    F          +    +   ++   
Sbjct: 229 ---SKNIVEYWEQALMSKELATIIL---DAPVDYEF----------SDAKLSGGVESLYT 272

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E   L     E K                +  S  + +  K N+E+      + R  K +
Sbjct: 273 EEAFLLCKRYEFK----------------NMLSRFNVEAPKNNAEE---HFVIVRDLKTA 313

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +         ++       + ++  E+ G  S      + D       A++I   +  +D
Sbjct: 314 ESVFEKAKGREVAFAVVPGESLENSESDGQLSLFSEPVSNDYL-----AVSICFSE--ED 366

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             F             S     +   T E+ S++    +          IK D       
Sbjct: 367 IYFICT------GDEISSSFLDEKLNTLEVKSWISPDLKTNLHRFKSKEIKADD------ 414

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
               RG + D+M+ +Y+++     +   ++A+ +L      +K+ L        + K  +
Sbjct: 415 ----RGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKL-DFTQMMKEDE 469

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            +  + A        +   +L  KL    +L +Y  ++ P++ V+  ME  GI+ D   L
Sbjct: 470 KKAVDCACYEVYTAWKSKPVLLQKLKEMDMLTLYRDIELPLVFVLYDMENEGIRADGIKL 529

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K+   +++ ++  LE+ IY+ +GE+FN++SPKQLG ILF KL  P+  KTKTG   +TA 
Sbjct: 530 KEYGDKLAVSITELEKKIYEAAGEEFNINSPKQLGVILFEKLGLPNEKKTKTGY--STAA 587

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +    + PI+ +ILE+RQL+K+KSTYAD L  +I    + +HT  +   T TGRL+S
Sbjct: 588 DVLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGK-IHTTLNQTITATGRLSS 646

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIPI+ +LG+ IR+ F+       + +DYSQIELR+LA ++    + + F+N  
Sbjct: 647 TEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQ 706

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  A+ +F    ++V+   RR+AK +NF I+YGIS F L+  L I R EA  YI  Y
Sbjct: 707 DIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYIDSY 766

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F ++P I E++++T    ++NGY +T+FGR     E+NS     R   ER A+N+PIQG+
Sbjct: 767 FVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIPELNSSNFMQRQFGERVAMNSPIQGT 826

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI VH  L D  L ++++LQ+HDEL+ E  E E     +++   M  A    
Sbjct: 827 AADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGA---- 882

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           +N++V ++V  +   +W + +
Sbjct: 883 VNMKVSMEVGTECGYDWYDAH 903


>gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall]
 gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall]
          Length = 875

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/984 (32%), Positives = 496/984 (50%), Gaps = 119/984 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+    ++E    +
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM----KEEINPDY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD+
Sbjct: 55  IVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ DKD +QL +    +  T K     E  D   +++++G+ P
Sbjct: 115 IGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMVEEFGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L                E 
Sbjct: 175 KEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVL----------------EN 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +                           G +L   L       + ++   T  C+ 
Sbjct: 219 IENIK---------------------------GKKLKENLHEYREQAIFSKKLATIICN- 250

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V +D++  + K              +  +F SL ++  K + E+           
Sbjct: 251 -----VPIDMSLEDIKSKEEYDINKVREMFERLEFKSLMNKVGKSDEEE----------- 294

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     SY  IV+ ++ +     +            D    F  + I +   +  +
Sbjct: 295 ----TVEEEVSYKNIVSLEEFKDLKNNIIKYK------ENDLYLYFELEDIVLFSKSRVK 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +FK E   ID                ++ +   K+ FE++   KI ++ K  + +L
Sbjct: 345 TLYANFKDEVYRIDF-------EMLIKNTKEQFIEVCKEIFESKEIKKITYDAKNPRTIL 397

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            + GI   G   DI L +Y++D  R  ++I+S+A ++L        E LK          
Sbjct: 398 RKLGIEFNGIKFDINLAAYLIDPVRKEYEISSLASEYLFKNINREDEFLK---------- 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                     I+  N++  L+ +L  K+  + +  +  ++++P+ + +S ME  G ++D+
Sbjct: 448 ----------IKEVNIMPNLYKVLEEKIKEQDMEELLYKVEQPLTETLSAMETEGFKVDK 497

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D+L Q+  +    + S +  IY +S E+FN++SPKQLG ILF KL  P   KTKTG + T
Sbjct: 498 DILLQLEKKFKGEIESTQLEIYSMSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YST 556

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ L+++    +PII  I  +RQL+KI STY + L   I++  + +H+ ++   T TGR
Sbjct: 557 NAEVLDKLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDEDGK-IHSNFNQTVTATGR 614

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIPIK ++G++IR+ FI       ++SADYSQIELR+LAHI+    +   F
Sbjct: 615 LSSTEPNLQNIPIKYEMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAF 674

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   A+E+F V IE+V+P MR +AK +NF I+YGI  F L+  L I R EA  Y
Sbjct: 675 NEHDDIHTKTASEVFKVPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQY 734

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y  R+P +  Y+E       + GYV TI  RR +  E+ S    ++   ER A+N+P
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAIEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSP 794

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM++VH+ L++    + ++LQ+HDEL+  V ++E+     ++   ME+ 
Sbjct: 795 IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEMEQV 854

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
               + L+V L V+I + NNW E 
Sbjct: 855 ----LELKVGLDVDINIGNNWYEA 874


>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
 gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
          Length = 945

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/1008 (30%), Positives = 482/1008 (47%), Gaps = 102/1008 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            HL L+DG S  +RA+YA         R   G+P +   GF   L ++L+  + +    H
Sbjct: 4   PHLLLIDGHSLAFRAYYAFSKGRDGGLRTSTGIPTSVCFGFLKSLLEILEQQQSD----H 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A+ FD    TFR+    +YKA R + P+  +  +  ++   +A  +P +   G+EADD+
Sbjct: 60  VAIAFDLGEPTFRHAADENYKAGRAETPQDFITDIANLQALLRALRLPLLSQPGYEADDV 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP----------TTCLYDTVKEEKIDIEHVIK 170
           I T  +    +G+ V+I+S D+DL QL+            +T        E  D   V +
Sbjct: 120 IGTVAHCWRSQGWPVSIVSGDRDLFQLIDREGQVQVLYLGSTLGQRKQGLEAFDALKVKE 179

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
             G+ PE++V  +AL GD+ D IPGI GIG KTA  LL +Y  LE+I  +   I+    R
Sbjct: 180 TMGVWPEQIVDYKALCGDASDRIPGIKGIGPKTAVQLLSQYPTLEDIYAHIHEIRPPSLR 239

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
             ++     AR SR L  +  DVP+ +PLE L L   + P L   L  LEF  L      
Sbjct: 240 TKLINGEADARHSRTLAQIVHDVPLELPLEELHLSPFDWPTLDHLLDQLEFRALR----- 294

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                        L +     +   I  +++ D           S++T       TP  L
Sbjct: 295 -------------LQLQDWHLRLGGILPDLETD-----------SEETWFFAPTDTPPPL 330

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
            ++ ++   Q            +      W               T  ++   +  + + 
Sbjct: 331 NVQLIETPEQLQWLMSQLETCTDANHPVAW------------DTETTALNPRDAALVGLG 378

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                  D  +      ++ L         G+N   +E L+ L+   E + + K+  N K
Sbjct: 379 CCWGAAPDQVA------YLPLGHKE-----GQNLPLEETLAALRPILEGDRYPKVLQNAK 427

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
           +D+LVL   GI +RG   D ML SYV++   +SH++  + Q++L    +           
Sbjct: 428 FDRLVLRFQGIQLRGVVFDTMLASYVINP-EASHNLKDLCQRYLPLQAQSYRTLVGKDQT 486

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  +S + V ++   + +    L   L   L   +L  +   ++ P+  ++++ME TGI+
Sbjct: 487 LADLSPATVAQYCGLDVHTTYLLKEKLEADL-TPRLRQLLLEVELPLEPILAEMEATGIR 545

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID D L+Q+S E+ + L +L++  +D  G+ FNL+SPKQL ++LF  L   +    KT  
Sbjct: 546 IDSDYLRQLSQELEQQLAALQQQAWDAVGQPFNLASPKQLSELLFGTLGLDTKKTHKTKL 605

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +T     +   GD+P+I  IL  R L+K+KSTY D LP  +   T RVHT ++ A T 
Sbjct: 606 GYSTDAATLEKLRGDHPVIDLILSHRTLAKLKSTYVDVLPTLVRPDTGRVHTEFNQAVTA 665

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S  PNLQNIPI+T+  ++IRRAFI      L++ADYSQIELRILAH+++   L  
Sbjct: 666 TGRLSSSSPNLQNIPIRTEFSRQIRRAFIPEAGWLLVAADYSQIELRILAHLSQEPALLA 725

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            ++   D+HR+ A   F +    +S   RR  K INF +IYG+ P R A +  +  +EA 
Sbjct: 726 AYQEGADVHRLTAQ--FLLEKTDISSSERRLGKMINFGVIYGMGPQRFAREAGVSVAEAK 783

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN------ 883
            +I+R+++R+P + +Y+ + +      GYVETI GRR ++   +    S+R         
Sbjct: 784 VFIQRFYNRYPRVFDYLRQMERLALSQGYVETILGRRRYFAFESRELQSLRGKPLDVLAD 843

Query: 884 ---------------ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
                           RAA NAPIQGS+ADI + AM+ +   L   K   ++LLQ+HDEL
Sbjct: 844 VDPSKLKMSNYERGLLRAAANAPIQGSSADIIKCAMVKLAPLLPPEK--ARLLLQVHDEL 901

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           V E+  E        I   M  A    + L VPL V+I  + NW E N
Sbjct: 902 VLEMTPEAWEHLQTTIPEVMSTA----VPLSVPLAVDIYAAANWLEAN 945


>gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
          Length = 950

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/993 (27%), Positives = 477/993 (48%), Gaps = 77/993 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 6   NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 62  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIA 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + +I K+ + P +
Sbjct: 122 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKYKVTPVQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 182 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A 
Sbjct: 241 QVKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                       N+    +    E+ ++
Sbjct: 301 ------------------------------------------ASNTSGAGESTNNEQNEQ 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIA 408
            S   +N    T I   +   +WV+    +++  G  +   ++D  D     A     + 
Sbjct: 319 DSSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVG 378

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H 
Sbjct: 379 HAWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHG 437

Query: 469 IKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            K    +L    + M     D  L  Y+      +  +   A+ +L     E  +  + +
Sbjct: 438 YKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGT 497

Query: 528 IPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +  D    +    EH + +  +I  L + L P +   +   +   ++ P+  V+  ME T
Sbjct: 498 LDFDDDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHT 557

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +      +TK
Sbjct: 558 GAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTK 617

Query: 647 TGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N   +R+H
Sbjct: 618 SGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIH 676

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILA 759
           T +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A
Sbjct: 677 TTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMA 736

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S + LA 
Sbjct: 737 DLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQ 796

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S     
Sbjct: 797 QLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVA 856

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+   E   
Sbjct: 857 REAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQ 916

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++ ++ME A    ++L VPL V+  + ++W
Sbjct: 917 VTELVRNAMEHA----VDLAVPLDVSCGIGSDW 945


>gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1]
 gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1]
          Length = 1040

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1043 (27%), Positives = 484/1043 (46%), Gaps = 88/1043 (8%)

Query: 6    HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG S  +RAFY+ P  + R   G+  NA+ GF +ML  +L+  +     +H    
Sbjct: 5    RLLVLDGHSLAFRAFYSRPPENFRTTTGVYTNAVHGFMSMLLAMLRREK----PTHIGAA 60

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            FD    +FR +IYPDYK  R + P   L Q+  ++    A GI  + ++  EADDI+AT 
Sbjct: 61   FDLSRHSFRTDIYPDYKGGRAETPPEFLGQIENIQRLLDALGIKWLTMENVEADDILATL 120

Query: 125  TYIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEHVIKKWGIPPEKMV 180
                + +G  V + S D+D  QL+  +T +    ++  +  ++  + V  K+G+ P +  
Sbjct: 121  ATQGKAQGMQVLVSSGDRDTFQLIDESTTVLYPGHNAAQTTRMTPQAVKDKYGVWPAQYP 180

Query: 181  CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             + AL G+  DN+PG+P +G K+AA  + +YG LE IL +   +K  KR EN+  + +  
Sbjct: 181  EVAALVGEKADNLPGVPLVGEKSAAAWINQYGGLEGILAHRGELKG-KRGENLRAHVDDV 239

Query: 241  RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              +R+L  LRTD+ + + L+ L     +   + +    LEF ++  +    +        
Sbjct: 240  LRNRELNRLRTDLHLPLQLDDLRWRGMDVSAVDAVCAELEFKEMRRQFLAFFGVSGGASG 299

Query: 301  PVVLDINTTENKGI---AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF------ 351
             +    +   + G+   +++T     +  + +   SL++   + + +   +  F      
Sbjct: 300  SMPGFASPGFSGGVGVDSVDTGAVDMSASRGASRDSLAEPQPEASLDFGSRHGFGIEPHP 359

Query: 352  --------------LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
                           E L        +  +   + N       +  L      +    T 
Sbjct: 360  VIHRLESDFQAGELREWLGLGQAPHESEIAVWAVGNIGVNAPSIDWLFLAKHVAIPEGTT 419

Query: 398  TMDAFHS--KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL----- 450
               A  S   P  +A    +          T            +       +E +     
Sbjct: 420  GETAAKSPTNPSGVASGDREANPREVTGELTAKPGNGASGGGTAASLALFREEAVLVTPS 479

Query: 451  -------SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSS 502
                   + L+ FF  E+   + +N K  +  L  YG  + G   D+ L+ Y+ D   S 
Sbjct: 480  TLRPESENVLRDFFAAENRTVVVYNAKALRHALRAYGWELSGTVRDVNLLDYLADPDASR 539

Query: 503  HDIASIAQKWLSYTRKE---ILKSRKSSIPID--------------------------KI 533
               A++ ++ L ++  E    +      +  D                           I
Sbjct: 540  LKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAVAASTGSKDISGGI 599

Query: 534  SDSQVQEHAIENSNV---ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                + E  +  +     +L +  +L  ++   ++  +   ++ P+  ++ +ME TGI +
Sbjct: 600  PLPSLPETLVNQAKYALSLLDMLPILTEQVEYRRVGSLL-DMELPLSRLLERMEDTGIAV 658

Query: 591  DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            D+ LL++   E+S  +   E   ++  G + NLSSPKQL D+LF +L  P   KTKTG  
Sbjct: 659  DEGLLQRFDQELSSEVKRTEAAAFEAIGREVNLSSPKQLQDVLFNQLGLPPTRKTKTGYT 718

Query: 651  KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
                   E      +P ++ +L +R  SK+      +L + I     R+HT +      T
Sbjct: 719  TDAKALEELALYNPHPFLQALLYFRDRSKLL-QVVRNLGDRIASDG-RIHTTFGQTVAAT 776

Query: 711  GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
            GRL+SL+PNLQNIP +TD G +IR  FI+  P   L++ADYSQIE+RI+AH++    L  
Sbjct: 777  GRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIA 836

Query: 770  VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
             F++  D+HR VAA +FGV  E V+   R H K  ++ + YG+S F LA QLRI + EA 
Sbjct: 837  AFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQGEAK 896

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
              ++ YF RF  + +Y+E   +  R+ GY ET++GRR +   + +    +     RAA+N
Sbjct: 897  HLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARRAALN 956

Query: 890  APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            APIQGSAAD+ ++AM+ V  ++    L +++LLQIHDELVFEV   E+    +++  +M 
Sbjct: 957  APIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVTEAMT 1016

Query: 950  KACLPKINLRVPLKVNIKVSNNW 972
                  + LRVPL+V++ V  NW
Sbjct: 1017 SV----VELRVPLEVSVGVGANW 1035


>gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 881

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/989 (30%), Positives = 490/989 (49%), Gaps = 123/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A           DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDA- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 60  ---ALVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++                EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSM----------------ENL 220

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               +  + S+              L+  ++ D +                +++   T D
Sbjct: 221 YANVDDMKKSK--------------LKENLINDKD-------------NAFLSKQLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    P+ +D+                D T        L D  +K+N     +K+   
Sbjct: 254 RDA----PLTVDLA---------------DVTYAGPDLDKLRDFYTKMNMNSLLKKIGGS 294

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             + +     +      +++    Q  +   +     +F+I     +   ++ I   I T
Sbjct: 295 VAKPVQAVHFS------VLDE---QSILALTKLTEPLTFEIEMLEDNYHVAEQIGFFIGT 345

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            ++   +                        +T   L  +K++ E+        + K + 
Sbjct: 346 KEETYVS----------------------TDVTLLTLPAVKRWLEDAKRDLTVFDGKRNI 383

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           +  +R G+ +     D++L SY+++   +S+D+  IA+      L        K  K  +
Sbjct: 384 VAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQV 443

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D     Q        S+ +  L   L   L  ++   ++  ++ P+  V+++MEI GI
Sbjct: 444 PEDDKLFGQF----ARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG
Sbjct: 500 TLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+       +PI+++IL++R  +K+ STY   L         ++HT Y    T
Sbjct: 560 Y--STSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPD-HKIHTRYLQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PN+QNIP + + G+ IR+AF+      ++ S+DYSQIELR+L+HI+    +
Sbjct: 617 QTGRLSSVDPNMQNIPARDE-GKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENM 675

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R 
Sbjct: 676 QEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRK 735

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER 
Sbjct: 736 QAKAFIDGYFDQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERT 795

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++  
Sbjct: 796 AMNTPIQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPK 855

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    ++L VPLKV       W + 
Sbjct: 856 VMDSA----VHLDVPLKVESHYGPTWFDA 880


>gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
 gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
          Length = 875

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/984 (32%), Positives = 496/984 (50%), Gaps = 119/984 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+ +  + +    +
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKMKEEIKPD----Y 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD+
Sbjct: 55  IVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ DKD +QL +    +  T K     E  D   +++++G+ P
Sbjct: 115 IGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMMEEFGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L                E 
Sbjct: 175 KEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVL----------------EN 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +                           G +L   L       + ++   T  C+ 
Sbjct: 219 IENIK---------------------------GKKLKENLHEYREQAIFSKKLATIICN- 250

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V +D++  + K              +  +F SL ++  K + E+           
Sbjct: 251 -----VPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKSDEEE----------- 294

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     SY  IV+ ++ +     +            D    F  + I +   +  +
Sbjct: 295 ----TVEEEVSYKNIVSLEEFKDLKNNIIKYK------ENDLYLYFELEDIVLFSKSRIK 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +FK E   ID            N   ++ +   K+ FE +   KI ++ K  + +L
Sbjct: 345 TLYANFKDEVYRIDF-------EMLLNNTKEQFIEVCKEMFEGKEIKKITYDAKNPRTIL 397

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            + GI   G   DI L +Y++D  R  ++I+S+A ++L        E LK          
Sbjct: 398 RKLGIEFNGIKFDINLAAYLIDPVRKEYEISSLASEYLFKNINREDEFLK---------- 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                     I+  N++  L+ +L  K+  + +  +  ++++P+ + +S ME  G ++D+
Sbjct: 448 ----------IKEVNIMPNLYKVLEEKIKEQDMEELLYKVEQPLTETLSAMETEGFKVDK 497

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D+L Q+  +    + S +  IY +S E+FN++SPKQLG ILF KL  P   KTKTG + T
Sbjct: 498 DILLQLEKKFKGEIESTQLEIYSMSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YST 556

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ L+++    +PII  I  +RQL+KI STY + L   I++  + +H+ ++   T TGR
Sbjct: 557 NAEVLDKLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDEDGK-IHSNFNQTVTATGR 614

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIPIK ++G++IR+ FI       ++SADYSQIELR+LAHI+    +   F
Sbjct: 615 LSSTEPNLQNIPIKYEMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAF 674

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   A+E+F V IE+V+P MR +AK +NF I+YGI  F L+  L I R EA  Y
Sbjct: 675 NEHDDIHTKTASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQY 734

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y  R+P +  Y+E       + GYV TI  RR +  E+ S    ++   ER A+N+P
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSP 794

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM++VHK L++    + ++LQ+HDEL+  V ++E+     ++   ME+ 
Sbjct: 795 IQGSAADIIKLAMVNVHKKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEMEQV 854

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
               + L+V L V+I + NNW E 
Sbjct: 855 ----LELKVGLDVDINIGNNWYEA 874


>gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 873

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/974 (30%), Positives = 480/974 (49%), Gaps = 110/974 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    +    + AV 
Sbjct: 2   KKLMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEINPD----YIAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + 
Sbjct: 57  FDKGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           +        AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++
Sbjct: 117 SKKFGTSEMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GDS DNIPG+PG+G KTA  L+ EYG+LE++  +   I  KK +E ++E     
Sbjct: 177 EMKALMGDSSDNIPGVPGVGEKTALKLITEYGDLESVYNHIEDISGKKLKERLVEN---- 232

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              + L  L  ++        L  +  +  +                     +  A+ ++
Sbjct: 233 ---KDLAFLSRELATIKTDMDLSYKVEDFAQ---------------------NFHASEVQ 268

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+   +  T  K      ++            SL     +I+                  
Sbjct: 269 PLFETLGFT--KLTPRIVQVMGGEATDFGDPGSLFAPQEEIS------------------ 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     + +  D +    +  T  + +  ++ D    F          T+     +
Sbjct: 309 ----------LDDLADAKALTSEFYTDKTVAVHVVLDGKTPFR---------TVTNAYLS 349

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +        D     +        +T +    ++ F E+        N            
Sbjct: 350 NGDTIVKTDDTKAILAVLQGANAIVTTQTKEIIEAFGEDAPAEISLFN-----------D 398

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  D+ L++Y+LD  R+++    + +++              S+P   I+   V  
Sbjct: 399 DKTARVHDMSLLAYLLDPTRTNYGYLYLTERF--------------SVP--SIASGSVDV 442

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             +     +L +  +       E+L  +YE ++ P+I  +  ME  GI ID + L + +A
Sbjct: 443 ECVSMVKALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTA 502

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              + L  +++ IYD++GE FN++SPKQLG ILF K+  P   KTKTG   +T  ++  +
Sbjct: 503 RFKEELAQVQQEIYDIAGETFNINSPKQLGVILFEKMNLPIIKKTKTGY--STDAEVLDM 560

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++PI++ IL +R ++K+ STY + L   IN +T+R+HT ++   T TGRL+S +PNL
Sbjct: 561 LRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPNL 620

Query: 721 QNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F        L+SADYSQIELRILAH++    L + F    DIHR
Sbjct: 621 QNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHR 680

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G + E V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+
Sbjct: 681 FTAAEVLGKSQEDVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRY 740

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI
Sbjct: 741 PKVKEYMDRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADI 800

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM  V + LE+    +++LLQ+HDELV EV   E+    +++  +M+      + L+
Sbjct: 801 IKLAMNQVEQKLEEGNFTSRLLLQVHDELVLEVVNSELEAVEELLRTTMQSV----VELQ 856

Query: 960 VPLKVNIKVSNNWQ 973
           V L V++  + NW 
Sbjct: 857 VHLIVDVHHAENWA 870


>gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 950

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/984 (28%), Positives = 473/984 (48%), Gaps = 59/984 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 6   NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 62  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIA 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + +I K+ + P +
Sbjct: 122 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKYKVTPAQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 182 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A 
Sbjct: 241 QVKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                        N   A E+  +      +S   +L + TS    EQ  + +   R++ 
Sbjct: 301 -----------ASNTSGAGESTNNEQNEQDSSLDLNLPEPTSITAPEQFDEWVKAHRVEV 349

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I + + +                                     +  A +     
Sbjct: 350 KVPGEIADFTVSDYGGGSQRHAIC----------------------GDAVGHAWTVAAWG 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           D+   +     I ++  TS  +     +T  + + L +F ++EH   I H  K    +L 
Sbjct: 388 DERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGYKELLHLLG 446

Query: 478 RYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS-D 535
              + M     D  L  Y+      +  +   A+ +L     E  +  + ++  D    +
Sbjct: 447 AVDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVE 506

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               EH + +  +I  L + L P +   +   +   ++ P+  V+  ME TG ++D   L
Sbjct: 507 EDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRL 566

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             +  + +      +E  ++ +G + NL SPKQL  +LF  +      +TK+G + T A 
Sbjct: 567 VSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAA 626

Query: 656 DLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            L+ +      N   N  +  +L  R+++K+K     +L +  N   +R+HT +      
Sbjct: 627 ALQDLYVKSVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIHTTFEQTVAA 685

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A ++    L 
Sbjct: 686 TGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALI 745

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S + LA QL+I   EA
Sbjct: 746 EAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREA 805

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S     R   ERAA+
Sbjct: 806 EALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAAL 865

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+   E    ++++ ++M
Sbjct: 866 NAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAM 925

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           E A    ++L VPL V+  + ++W
Sbjct: 926 EHA----VDLAVPLDVSCGIGSDW 945


>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
 gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I
 gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
          Length = 908

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/979 (33%), Positives = 502/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A      
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511]
 gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511]
          Length = 904

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/961 (30%), Positives = 475/961 (49%), Gaps = 87/961 (9%)

Query: 23  TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKA 82
            P L +  +G P   + GF N + +L    +K+    +     D    TFR EIYP+YKA
Sbjct: 20  LPPL-KNSEGFPTGLLTGFVNFIHQL----QKDHATDYIVFAMDSEGPTFRKEIYPEYKA 74

Query: 83  NRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDK 142
           NRP  PE L+ QLP+     +  G   +    +EADD+IAT T   +++G    I+S+DK
Sbjct: 75  NRPAPPEDLMQQLPVAIRWVEMMGFANLSKARYEADDVIATLTKCGKEQGIVAKIVSSDK 134

Query: 143 DLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
           DL QL+      +YD VK++ +D +  ++K+G+ P   V  QAL GDS DN+PG+PGIG 
Sbjct: 135 DLYQLLDDDRVYIYDWVKKKAVDEKGCLEKFGVHPRDFVDFQALIGDSSDNVPGVPGIGP 194

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           KTA+ L+ E+  LEN+  +       + R+ ++E+ E A LSR+LV L  DV  +  LE 
Sbjct: 195 KTASKLINEFHTLENLYAHIEEAGTPRIRKLLIEHEEQAFLSRELVRLVDDVFDSCALEE 254

Query: 262 LILEDCNG-PRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEI 320
              ED N    L    +  E  + +                             A +   
Sbjct: 255 YAFEDRNYLAALKEEFEKYEMRQALR---------------------------WASQEGS 287

Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW 380
            R  + K SQ                      E     +           + + + ++  
Sbjct: 288 GRAASAKASQA---------------------EEPAASAVSAPAPFEAVLLESEEKLEAV 326

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
             ++      +F   T  +D   +K +  + +  ++K          ++ ++        
Sbjct: 327 FSQIPEEAVVAFDTETTGLDTRSAKMVGFSFAFEEEK--------AYYVPVAHSYL--GV 376

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE---DIMLMSYVLD 497
           G     +     ++K         +G N+K+D  +L+ + + M   E   D M+++++LD
Sbjct: 377 GPQVSLEAAKKAIEKLM---RHRIVGQNLKFDLSLLYSH-LEMEPIEPEADTMILAWLLD 432

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
            G S   +  +AQK+L Y  K   ++ K       ++  +   +A E++    QL+  L 
Sbjct: 433 PG-SRVGLDILAQKFLGYQMKSFKETVKKGEDFSSVALEEAAFYAAEDAWATRQLYFRLT 491

Query: 558 PKLIVEKLLHVYER---LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
                  L H+ +    ++ P I+V+  ME  GI++D   L+ +  E+S  L  L + I+
Sbjct: 492 ELFKKGGLEHLLKEAKEVEFPFINVLIAMERLGIRVDTKHLRSLKEELSAELARLTQEIH 551

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
            L+G +FN+ S +QLG++LF  L    G KTKTG   +T + + +   G++PI++ ILE+
Sbjct: 552 TLAGTEFNIKSTQQLGNVLFGTLGLKGGKKTKTGY--STNESVLRNLIGEHPIVEKILEY 609

Query: 675 RQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           R+  K+ STY D L     K  + R+HT +    T TGRLAS +PNLQNIP++++LG+++
Sbjct: 610 REHQKMLSTYVDPLLKLAEKDPEGRIHTTFVQTGTATGRLASKDPNLQNIPVRSELGRRV 669

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           RRAF++    +L S DYSQIELR+LAH +    L + FE   DIH   A ++FG    + 
Sbjct: 670 RRAFVAQEGFRLASIDYSQIELRLLAHFSGDAALREAFEKGEDIHMATAIKLFG---PEE 726

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +   R  AK+INF ++YG+   +LA +L I   EA + I+ YF  FP +  Y+E+ +   
Sbjct: 727 AAAKRNFAKSINFGLLYGMGSRKLADELGITTKEAKEIIEAYFAAFPTVRSYLEQIQQQA 786

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           ++ GYVET+  RR  +D   +    ++    R A+N   QGSAAD+ + AM+ +   + +
Sbjct: 787 KEQGYVETLLRRRRVFDYEGAS-GMMKAAILREAVNTVFQGSAADLIKLAMLDIDTMIRE 845

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             L  +MLLQIHDEL+FE+PE +    +    H+ME        L VPLK ++ +  +W 
Sbjct: 846 EGLEARMLLQIHDELIFEIPEAQAEETAARFRHTMEH----IYPLEVPLKCSVSLGGSWD 901

Query: 974 E 974
           E
Sbjct: 902 E 902


>gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
 gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
          Length = 908

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/979 (33%), Positives = 503/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDNLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A +    
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI---- 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
 gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
          Length = 912

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/982 (29%), Positives = 467/982 (47%), Gaps = 103/982 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L L+DG S  YRAF+A P  + +   G   NA+ GF +ML  LL++ +     +H
Sbjct: 20  SDRPTLMLLDGHSLAYRAFFALPAENFKTQSGQATNAVYGFTSMLINLLRDEQ----PTH 75

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR E +P+YKANR K P+    Q+ + +    A GIP + I+GFEADD+
Sbjct: 76  VAAAFDVSRQTFRAEAFPEYKANRSKTPDEFKGQVEITKDVLAAMGIPVMAIEGFEADDV 135

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT T  A   G+ V +++ D+D +QLV+    +    K      +     V +K+G+ P
Sbjct: 136 IATLTTQATALGYRVLVVTGDRDSLQLVTEDVTVLYPRKGVSDLTRFTPAAVEEKYGLTP 195

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++     AL GD  DN+PGIPG+G KTAA  ++EYG+LEN++ +  +++  K  + +   
Sbjct: 196 QQYPDYAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLENLVNDVDKVRG-KVGDALRAN 254

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +  L+R L  +  DV +            +   L  + +         R+   +D   
Sbjct: 255 VNSVLLNRHLTEMVRDVAVPYT--------PDQLALAPWDRE--------RIHALFDD-- 296

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                            +F  L D+     S   P+      + 
Sbjct: 297 --------------------------------LEFKVLRDRLFATLSSTEPEAEEGFEVS 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +            +   ++  W+ +  + G      +  T         A+AI+  D 
Sbjct: 325 GRA------------LAPGEVAAWIAEHASTGERHGLSVVGTTTPHGGDVTAVAIAAPDG 372

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +            D +      +                        K  H  K     L
Sbjct: 373 EGAYISTTTATPEDEAALADWLADAG-------------------RPKALHEAKRAMHAL 413

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI---DK 532
              G ++ G   D  L +Y++  G+ S ++  ++ ++L    + + +S +  + +   + 
Sbjct: 414 RGRGWTLAGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELR-VEESGQQQLSLLDDED 472

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            +D++  E  I  S  +L L   L  +L   +   +   ++ P+++V++ +E TGI +D 
Sbjct: 473 AADAEAAEGEILRSRAVLDLAAALDTELADIEATGLLADMELPLLEVLANLESTGIAVDT 532

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L  + +  +  +    E  Y + G++ NL SPKQL  +LF +L  P   KTKTG    
Sbjct: 533 THLHDLQSAFAARVAEAAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTTD 592

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                       +P ++++LE R  +++K T  D L   + +   R+HT ++     TGR
Sbjct: 593 ADALQSLFEKTQHPFLEHLLEHRDATRLKVT-VDGLLKTVAEDG-RIHTTFNQTVAATGR 650

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIP++TD G++IR  F+       L++ADYSQIE+RI+AH++    L + F
Sbjct: 651 LSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAF 710

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               D+H  V +  FGV IE+V+P++RR  K +++ + YG+S F LA QL+I   EA   
Sbjct: 711 ITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEARQQ 770

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF RF G+ +Y+ +     R+ GY ET+FGRR +  ++NS     R + ERAA+NAP
Sbjct: 771 MDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRYLPDLNSDNRQRREVAERAALNAP 830

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI V ++L +  LA++MLLQ+HDELV EV   E     Q++   M  A
Sbjct: 831 IQGTAADIIKVAMIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVEQLVREKMAAA 890

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
               I+L VPL+V++    +W 
Sbjct: 891 ----IDLSVPLEVSVGTGRSWD 908


>gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
 gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
          Length = 881

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/989 (31%), Positives = 490/989 (49%), Gaps = 123/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A           DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDA- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 60  ---ALVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++                EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSM----------------ENL 220

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               +  + S+              L+  ++ D +             +  +++   T D
Sbjct: 221 YANVDDMKKSK--------------LKENLINDKD-------------SAFLSKQLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    P+ +D+                D T        L D  +K+N     +K+   
Sbjct: 254 RDA----PLTVDLA---------------DVTYAGPDLDKLRDFYTKMNMNSLLKKIGGS 294

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             + +     +      +++    Q  +   +     +F+I     +   ++ I   I T
Sbjct: 295 VAKPVQAVHFS------VLDE---QSILALTKLTEPLTFEIEMLEDNYHVAEQIGFFIGT 345

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            ++   +                        +T   L  +K++ E+        + K + 
Sbjct: 346 KEETYVS----------------------TDITLLTLPAVKRWLEDAKRDLTVFDGKRNI 383

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           +  +R G+ +     D++L SY+++   +S+D+  IA+      L        K  K  +
Sbjct: 384 VAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQV 443

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D     Q        SN +  L   L   L  +    ++  ++ P+  V+++MEI GI
Sbjct: 444 PEDDKLFGQF----ARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG
Sbjct: 500 TLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+       +PI+++IL++R  +K+ STY   L         ++HT Y    T
Sbjct: 560 Y--STSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPD-HKIHTRYLQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PN+QNIP + + G+ IR+AF+      ++ S+DYSQIELR+L+HI+    +
Sbjct: 617 QTGRLSSVDPNMQNIPARDE-GKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENM 675

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R 
Sbjct: 676 QEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRK 735

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER 
Sbjct: 736 QAKAFIDGYFDQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERT 795

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++  
Sbjct: 796 AMNTPIQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPK 855

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    ++L VPLKV       W + 
Sbjct: 856 VMDSA----VHLDVPLKVESHYGPTWFDA 880


>gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 881

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/989 (31%), Positives = 490/989 (49%), Gaps = 123/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A           DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDA- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 60  ---ALVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++                EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSM----------------ENL 220

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               +  + S+              L+  ++ D +                +++   T D
Sbjct: 221 YANVDDMKKSK--------------LKENLINDKD-------------NAFLSKQLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    P+ +D+      G  +E                L D  +K+N     +K+   
Sbjct: 254 RDA----PLTVDLADVTYAGPDLEK---------------LRDFYTKMNMNSLLKKIGGS 294

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             + +     +      +++    Q  +   +     +F+I     +   ++ I   I T
Sbjct: 295 VAKPVQAVHFS------VLDE---QSILALTKLTEPLTFEIEMLEDNYHVAEQIGFFIGT 345

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            ++   +                        +T   L  +K++ E+        + K + 
Sbjct: 346 KEETYVS----------------------TDVTLLTLPAVKRWLEDAKRDLTVFDGKRNI 383

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           +  +R G+ +     D++L SY+++   +S+D+  IA+      L        K  K  +
Sbjct: 384 VAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQV 443

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D     Q        SN +  L   L   L  +    ++  ++ P+  V+++MEI GI
Sbjct: 444 PEDDKLFGQF----ARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG
Sbjct: 500 TLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+       +PI+++IL++R  +K+ STY   L         ++HT Y    T
Sbjct: 560 Y--STSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPD-HKIHTRYLQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PN+QNIP + + G+ IR+AF+      ++ S+DYSQIELR+L+HI+    +
Sbjct: 617 QTGRLSSVDPNMQNIPARDE-GKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENM 675

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R 
Sbjct: 676 QEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRK 735

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER 
Sbjct: 736 QAKAFIDGYFDQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERT 795

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++  
Sbjct: 796 AMNTPIQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPK 855

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    ++L VPLKV       W + 
Sbjct: 856 VMDSA----VHLDVPLKVESHYGPTWFDA 880


>gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40]
          Length = 908

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/979 (33%), Positives = 502/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A      
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
 gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
          Length = 908

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/979 (33%), Positives = 502/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ ++    KE    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFII----KEKNPKHL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKIKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A      
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 888

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/974 (28%), Positives = 459/974 (47%), Gaps = 98/974 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  YRAF+A P  +     G P NAI GF +ML   L++       +HFAV FD
Sbjct: 1   MLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASMLANTLRDE----SPTHFAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T+R+E + +YKANR K P+    Q+ L+     A       ++GFEADD+IAT   
Sbjct: 57  VSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAQRFAVEGFEADDVIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE EGF V I++ D+D  QLVS  T +    K      +   E V +K+G+ P +    
Sbjct: 117 QAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+PGIPG+G KTAA  + ++G+   ++     +K  K  +N+ ++ E+ +L
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKG-KAGQNLRDHLESVKL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +R+                              L  LE    +++     +  A + + V
Sbjct: 236 NRR------------------------------LTELERRVELSQGVLALERAAYDRKAV 265

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            + ++T E +  ++   +              +       +E TP       L       
Sbjct: 266 AMILDTLEIRNPSLRERL-------------FAVDPGAEEAEATPVVTEGVELDG----- 307

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                   ++ T ++  W+ +    G      +            A+   ++ +    + 
Sbjct: 308 -------TVLGTGELTAWLGE-HGTGPLGVATVGTW---------ALGTGSVAEIALATA 350

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                + D S     D              L  +  +    K+ HN K    V   +G +
Sbjct: 351 AGPAAWFDPSELDEADE-----------RALTAWLADPERPKVFHNAKGAMRVFAEHGWT 399

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + G   D  L +Y++  GR S D+ +++ ++L    +E+  +      +   +D   +  
Sbjct: 400 IEGVTMDTALAAYLVKPGRRSFDLDALSLEYLH---RELAPAAAPDGQLAFGADDGAEAE 456

Query: 542 AIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A+   +  IL L      +L       +   ++ P   ++++ME  GI  D++ L+ +  
Sbjct: 457 ALMVQARAILDLGEAFEGRLAEVGAADLLRDMELPTSALLARMERHGIAADREHLQAMEQ 516

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
             +  +    +  +  +G +FNL SPKQL ++LF +L  P   KTKTG            
Sbjct: 517 MFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLA 576

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              DN +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+S +PNL
Sbjct: 577 TQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLSSTDPNL 634

Query: 721 QNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  D+H 
Sbjct: 635 QNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHT 694

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AA++F V    V  +MRR  K +++ + YG+S F L+ QL I  +EA   +  YF RF
Sbjct: 695 TAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARALMDAYFERF 754

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ +Y+ +  +  R  GY  T+FGRR +  ++NS     R   ER A+NAPIQG+AADI
Sbjct: 755 GGVRDYLRRVVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADI 814

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++V ++L +  L ++MLLQ+HDE+V E+   E     +++   M  A    + LR
Sbjct: 815 VKIAMLNVDRALREADLRSRMLLQVHDEIVLELAPGERAAVEELVRREMSTA----VELR 870

Query: 960 VPLKVNIKVSNNWQ 973
           VPL V++    +W+
Sbjct: 871 VPLGVSVGAGPDWE 884


>gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
 gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
          Length = 885

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/989 (31%), Positives = 499/989 (50%), Gaps = 119/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAFYA    L R    +GL  NAI  F NML  +++       
Sbjct: 1   MANK-KLLLIDGNSVAFRAFYALYRQLDRFQNPEGLHTNAIYAFKNMLDVIVKQEN---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD   VTFR ++Y DYK  R K P  LL Q+P ++   +  GI + E+  +EA
Sbjct: 56  PSHVLVAFDAGKVTFRTKLYSDYKGGRQKTPSELLEQIPYIKEMLKDLGIKSYELANYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII TY+ + E  G+ V ++S DKDL QL S  T +Y T       E    EH+ +  G
Sbjct: 116 DDIIGTYSKMGEDAGYQVAVVSGDKDLTQLASDLTTVYVTKSGVSELEAFTPEHMKEVNG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + + ++AL GD+ DN PG+  +G KTA+ L+Q+YG++                ENI
Sbjct: 176 VTPTEFIDMKALMGDNSDNYPGVTKVGPKTASNLIQQYGSV----------------ENI 219

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            ++ +  + S+              L+  ++ D +   L   L  ++ T  +        
Sbjct: 220 YKHIDEMKKSK--------------LKENLINDKDKAFLAKTLATIDRTSPVELKLDDLK 265

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
               N   +         +    E     +   + S                        
Sbjct: 266 KQETNTVELRKFYEQMNFRRFLAELNSSDNEIGEAS------------------------ 301

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                     +      ++N K++ +     +     SF +     +   +  +  ++  
Sbjct: 302 ----------DKKVDYIVLNEKNLDKLP---KDGSEVSFYLGMFGENYHLADFVGFSLKM 348

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            D    +                      N ++      L    E++   K   ++K   
Sbjct: 349 GDNIYVS----------------------NDVSLLTKQPLLSLLEDQAIAKNVFDLKRTM 386

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSI 528
           + L+R GI       D++L SY++++  +S+D+  I Q +  Y  +       K +K++I
Sbjct: 387 VGLYRLGIKSHNMNYDMLLASYLVNNENNSNDLGEICQLYNYYDLQPDIDIYGKGKKAAI 446

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P + +       H       I  L   L  KL   +   +YE ++ P+ +V+++MEITG+
Sbjct: 447 PEETV----FFNHLAGKVLAIEVLKPTLLKKLTEHEQDDLYETIEMPVANVLAKMEITGL 502

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           + D   L Q+  + ++ L  LE +IY  +GE+FN++SPKQLG ILF KL  P   KTKTG
Sbjct: 503 KTDASTLVQLGNDFAQRLTELEADIYLEAGERFNINSPKQLGQILFEKLGLPPIKKTKTG 562

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T+ + LEQ+    +PI++ +L++RQ++KI+STY   L + I     RVHT Y    T
Sbjct: 563 -YSTSVEVLEQLK-EQSPIVQKVLDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYQQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++ + G+KIR+AF+       + S DYSQ+ELR+LAH++    +
Sbjct: 620 ATGRLSSVDPNLQNIPVRLEEGKKIRKAFVPSNSDGYIFSCDYSQVELRVLAHVSGDENM 679

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+   DIH   A +IF ++   +V+P MRRHAK +NF I+YGIS + L+  L I R 
Sbjct: 680 QEAFKTGYDIHAHTAMKIFHLDSPNEVTPNMRRHAKAVNFGIVYGISDYGLSKNLGISRK 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I  YF ++P I +Y++K  NF R+NGYVETI  RR +  +I++   ++R+  ER 
Sbjct: 740 QAKEFIDNYFEQYPKIKDYMDKEINFARENGYVETIMHRRRYLPDIHAKNFNVRSFAERT 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN+PIQG AADI + AMI++ K L++  L TKML+Q+HDEL+F+VP +E+ T  +++  
Sbjct: 800 AINSPIQGGAADIIKIAMINMQKKLDELHLKTKMLIQVHDELIFDVPADELETIKKVVPE 859

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    + L VPL  +    ++W E 
Sbjct: 860 VMQNA----VQLDVPLVADSNWGHDWYEA 884


>gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 912

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/985 (27%), Positives = 467/985 (47%), Gaps = 104/985 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    L L+DG S  YRAF+A P  + R   G   NA+ GF +ML  LL++ +     +H
Sbjct: 19  KDRPRLLLIDGHSMAYRAFFALPAENFRTKTGQVTNAVFGFTSMLINLLRDEK----PTH 74

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+E Y DYKANR   P+    Q+ LV+      GIP++  + +EADD+
Sbjct: 75  LAVAFDLSRKTFRSETYADYKANRSTTPDEFRGQVDLVKEVLDVLGIPSLTKENYEADDV 134

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           IAT T  A  E + V I + D+D +QLV+    +    +      +   E V +K+G+ P
Sbjct: 135 IATLTTQA-GEDYDVLICTGDRDALQLVTDRVTVLYPKRGVSDLVRFTPEAVEEKYGLTP 193

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIPG+G KTAA  ++++G+L +++     +K  K  + + E+
Sbjct: 194 TQYPDFAALRGDPSDNLPGIPGVGEKTAAKWIRQFGSLADLIDRVDEVKG-KVGDALREH 252

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             + +L+R+                              L  L     +  V    +   
Sbjct: 253 LSSVQLNRQ------------------------------LTELVRDVPLESVPDQLELRP 282

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N E V    +  E +             ++   F +LS    + +S        L    
Sbjct: 283 WNREAVHRLFDELEFR------------VLRDRLFETLSSAEPEADSGFEVSGSALAPGA 330

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +                    W++     G         T  +  S   A+A +T D 
Sbjct: 331 LGA--------------------WLEAHAGAGEPVALSFRATGSSVRSDLKAVAFATADG 370

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          ++D++     D              L  +  +    KIGH++K     +
Sbjct: 371 EGA--------YVDVTAMDEADD-----------RALSAWLADPEIRKIGHDLKVPLHAV 411

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G +  G   D  L +Y+   G+ +  +  +A ++L    +         + +     
Sbjct: 412 RARGWTFGGLNMDTALAAYLARPGQRTFGLDDLALRYLHRELRSEAGDGDGQLSLLDGGA 471

Query: 536 SQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            ++++  I      +  I +L   L  +L       +   L+ P+++V++++E  GI +D
Sbjct: 472 DELEQKEISAELVKARAIFELAGALAAELEELGGAKLLAELELPLLEVITELEAAGIAVD 531

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D L ++ A     +    E+ Y++ G++ NL SPKQL  +LF +L  P   +TKTG   
Sbjct: 532 TDQLTELEAHYLSRVTQAAESAYEVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTT 591

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
                       ++P ++++LE R  +++++T  + L   +     R+HT        TG
Sbjct: 592 DADALQSLFEKTEHPFLQHLLEHRDATRLRTT-VEGLIKSV-ADDGRIHTTLQQTIAATG 649

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQV 770
           RL+S+EPNLQNIP++T+ G++IR AF+      +L++ADYSQIE+RI+AH++K   L + 
Sbjct: 650 RLSSIEPNLQNIPVRTEEGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSKDEGLIEA 709

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  D+H  VA+  F V   +++P+ R   K +++ + YG+S + L+ QL+I   +A +
Sbjct: 710 FNSGEDLHTFVASRAFSVPAAEITPEQRYRVKAMSYGLAYGLSAYGLSQQLKISTEDAKE 769

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            ++ YF RF G+ +Y++       + GY ETIFGRR +  ++NS     R + ER A+NA
Sbjct: 770 QMEAYFSRFGGVRDYLQSVVGEAAKCGYTETIFGRRRYLPDLNSDNRQRREMAERMALNA 829

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AM++VH++L +    +++LLQ+HDELV E+ + E +   +++   M  
Sbjct: 830 PIQGSAADIIKVAMLNVHRALAEAGARSRVLLQVHDELVLEIADGERSDVEKLVREGMGS 889

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A      L VPL+V++    +W E 
Sbjct: 890 AA----ELAVPLEVSVGYGRSWNEA 910


>gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
 gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
          Length = 908

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/979 (33%), Positives = 503/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +LRI + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELRITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A      
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/983 (31%), Positives = 488/983 (49%), Gaps = 117/983 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++  L L+DG+S  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H
Sbjct: 1   MTQK--LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAIYGFTTMLTRILEEEK----PTH 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + +YK  R K P  L  Q P +R    A+GI   E+  +EADDI
Sbjct: 54  LLVAFDAGKTTFRHKTFTEYKGGRQKTPPELSEQFPFIRELLDAYGIKRYELPDYEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T +  AE++G AV +IS DKDL+QLVS    +  T K                   + 
Sbjct: 114 IGTLSKQAEQKGMAVKVISGDKDLLQLVSEHVTVDITRKG------------------IT 155

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA--E 238
            + + T  +ID   GI          L+   G+  + +     + +K   + + E+   E
Sbjct: 156 DVDSYTPAAIDEKYGITAAQIIDMKGLM---GDSSDNIPGVPGVGEKTALKLLKEFETVE 212

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               S                    ++  +G +L   L+    + ++++   T  C+A  
Sbjct: 213 NVLKS--------------------IDQVSGKKLKEKLEDNRESAIMSKKLATIYCEAP- 251

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                L+++  + K    E+        +    S L+        E   +++  E  Q++
Sbjct: 252 -----LEVSVEDAKYDGFESSKVISLFKELGFNSLLAKFGESAEEEADFEEITFEIAQEV 306

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               + +++   +   ++                       +  H++ +   IS  +   
Sbjct: 307 HDDMLTSEAALIVEGYEE-----------------------NYHHNQLLGFGISNNNG-- 341

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    FID     S              S  K + E+    K   N K   + L  
Sbjct: 342 -------HYFIDKDTALSS-------------SKFKAWLEDGRVKKTVFNGKRTIVSLKW 381

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKE--ILKSRKSSIPIDKI 533
            G  ++G   D+M+ SY+L+   ++ D+A+IA+   +      E    K  K SI     
Sbjct: 382 AGHEIKGIEHDVMIASYILNPAEANDDLATIAKLKGYHQVQSDEAVYGKGAKRSIA---- 437

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              Q+ EH I  +  +  L  +L  +L+  +   ++E+L+ P+  V++ ME  G++ID+ 
Sbjct: 438 EADQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFEKLEMPLAIVLADMEYQGVKIDRA 497

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++ + L  +E  IY+ +G++FN++SPKQLG +LF K++ P   KTKTG   +T
Sbjct: 498 RLDEMGEDLREQLEKIEAKIYEYAGQEFNINSPKQLGVVLFEKMQLPVIKKTKTGY--ST 555

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     + II  IL++RQL K++STY + L   I++   +VHT ++   T TGRL
Sbjct: 556 SADVLEQLASTHDIIPEILQYRQLGKLQSTYIEGLKKVIHESDGKVHTRFNQTLTQTGRL 615

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S++PNLQNIPI+ + G+KIR AF+   P   + +ADYSQIELR+LAHIA    L   F+
Sbjct: 616 SSVDPNLQNIPIRLEEGKKIRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFK 675

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIH   A ++F V  E+V+  MRR AK +NF I+YGIS + L+  L I R  AA +I
Sbjct: 676 HDLDIHTKTAMDVFHVEREEVTANMRRQAKAVNFGIVYGISDYGLSQSLGITRKAAATFI 735

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RY   FPG+ EY++      ++ GYV T+  RR +  EI S   ++R+  ER A+N PI
Sbjct: 736 ERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLHRRRYLPEITSRNFNLRSFAERTAMNTPI 795

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AMI + K L+D  L  K+LLQ+HDEL+FE PEEEI    +I+   ME A 
Sbjct: 796 QGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKILEKIVPEVMENA- 854

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
              + L VPLKV+      W E 
Sbjct: 855 ---LELEVPLKVDYSYGKTWYEA 874


>gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1]
          Length = 908

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/979 (33%), Positives = 503/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A +    
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI---- 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 880

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/984 (30%), Positives = 504/984 (51%), Gaps = 118/984 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              + L+DG S + RAFY  P L+   +GL  NAI GF N+L+K+L+  + +    +  V
Sbjct: 2   REKILLIDGHSILNRAFYGLPDLTNA-EGLHTNAIYGFLNILFKILEEEKPD----YLTV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++ Y  YK  R  +P  L  Q+P+++    A G+  I  +G+EADD++ T
Sbjct: 57  AFDLHAPTFRHKQYEAYKGTRKPMPMELREQIPVMKDVLSAMGVTMITKEGYEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
               +E++G  VTI+S D+DL+QL S   C+     +      E      V + + + P 
Sbjct: 117 VAKKSEEKGMDVTILSGDRDLLQLASSHICIRIPKTKGGKTTIEDYYENDVKEAYQLTPL 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L+AL GD+ DNIPG+PG+G KTA  +L EYG +EN   +A  +K            
Sbjct: 177 QIIELKALMGDTADNIPGLPGVGEKTATKILLEYGTVENAKAHAEELK------------ 224

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                                         N  +  +FL+  +   L   +AT       
Sbjct: 225 -----------------------------PNKAK-TAFLEHYDLAVLSKELAT------- 247

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                           I I++ I+ D   + ++  +L    +    ++   K FL R + 
Sbjct: 248 ----------------ICIDSPIEYD--WEGAKIHNLYTPEAYEFFKELEFKNFLSRFED 289

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             +     +S+  I +  + ++  ++         +++ +       + + + ++  ++K
Sbjct: 290 TGEENKIEESFRYITDFTETEKIFERALEEPVVGIELLEE-----KGQILGLGLAWGEEK 344

Query: 418 DDTSFKVETIF--IDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +    +   F   D  +  +Q+    GK   +  I + L+             ++K   
Sbjct: 345 TEVYSILPQGFVTEDYLIEKTQEFCQQGKLIASLNIKAMLR-----------YMDLKSH- 392

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEILKSRKSSIPID 531
                         D  L +Y+L+  +S +    IA+++L      KE L  + S I   
Sbjct: 393 ----------NDMFDAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGKLSYIKAA 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              + ++ +     +   L+    L   L  E +  +Y  ++ P++  ++ ME  GI ++
Sbjct: 443 NEKEEELAKSVCYMAYTALKSRTSLLEALEKENMKELYTDMEMPLLFTLADMEKEGILVE 502

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + LK+   ++   + +LE+ I++ +GE+FN++SPKQLG ILF KL+ P G KTKTG   
Sbjct: 503 AEALKEYGEKLQVRIEALEKEIWEQAGEEFNINSPKQLGVILFEKLELPGGKKTKTGY-- 560

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +TA D+ +    ++ ++ +ILE+RQL+K+KSTYAD L N+I +   R+H+ ++   T TG
Sbjct: 561 STAADVLEKLAPEHKLVADILEYRQLTKLKSTYADGLANYIAEDG-RIHSTFNQTITATG 619

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R++S EPNLQNIP++T+LG+ +R+ FI       + ADYSQIELR+LAH++    L Q +
Sbjct: 620 RISSTEPNLQNIPVRTELGRLLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAY 679

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           + + DIHR+ A+++F +  ++V+P  RR+AK +NF I+YGIS F L+  L I R EAA Y
Sbjct: 680 QEAQDIHRITASQVFHIPFDEVTPLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQY 739

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF  +P I  +++      ++ GYV T+F RR    E+ S     R+  ER A+N+P
Sbjct: 740 IESYFQTYPKIKGFLDGLVEEAKEKGYVSTLFHRRRPVPELKSSNFMQRSFGERVAMNSP 799

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI V+K L++  L ++++LQ+HDEL+ E  +EE+   S I+   M++A
Sbjct: 800 IQGTAADIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEA 859

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
                +L V L++++    NW E 
Sbjct: 860 A----HLSVALEIDMHTGENWYEA 879


>gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46]
 gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46]
          Length = 881

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/978 (29%), Positives = 473/978 (48%), Gaps = 110/978 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L L+DG S  +RAF+A P+ +     G   NA+ GF +ML  +L   +     +H A
Sbjct: 2   KKTLMLIDGHSMAFRAFFALPVDNFSTTGGQTTNAVYGFLSMLSNILSEEK----PTHVA 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNEI+P+YKA R K PE    Q+PL++   +  GI  +E   +EADDIIA
Sbjct: 58  VAFDVARETFRNEIFPEYKAQREKTPEEFRGQVPLIQQVLKEMGIVTLEKDNYEADDIIA 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    A+ EGF   I++ D+D  QLV+ TT +   ++      +     + KK+G+ P +
Sbjct: 118 TLATQAKPEGFETLIVTGDRDSFQLVNDTTTVLYPMRGVTTLHRFTPAAIEKKYGLTPTQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTA   + +YG L N++ +A  I+  K  +N  E   
Sbjct: 178 YPDFAALRGDPSDNLPGIPGVGEKTATKWIVQYGTLANLIDHADEIRG-KVGDNFRERVA 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             +L+R +    T++   +PL        N   L                        A+
Sbjct: 237 NVQLNRDI----TEMVKDLPL----PYGPNELELRP----------------------AD 266

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            + ++   +  E      E      +       +S S+  +++ +               
Sbjct: 267 AQGIIDFFDRLEFGDNLRERVFRILSIEGAGVTASTSESATELEAVS------------- 313

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                        ++   +  W+ +L    +      T            + I + D+K 
Sbjct: 314 -------------LDDGALAAWLGELHEPAALQVGEHT------------LMIGSADEKG 348

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            TS   + + +DL   +++D+             L+++   +H  K+ H+ K    VL  
Sbjct: 349 KTS--GQAVSLDLGELSAEDA-----------DALREWLAGDH-PKLVHDSKSAMHVLWN 394

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           Y   + G   D  L +Y+L   + S+ + ++ Q+ L  T  +        + +       
Sbjct: 395 YDFELVGVIHDTFLAAYLLRPSQRSYSLDNVVQRHLGQTLSQADG----QMTLLDGPAED 450

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                  +   ++ L   L  +L    L  VY  L+ P+  V+ +ME  GI +D D L++
Sbjct: 451 -----ASHVAAVIDLAERLAVELDEAGLYSVYADLEVPLAPVLGRMERAGIAVDVDALEE 505

Query: 598 VSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +  +        E    +L  + + NL SPKQL ++LF +L  P   KTKTG      + 
Sbjct: 506 LRKQAQAATDDAESAARNLVDKPELNLGSPKQLQEVLFDQLGMPKTKKTKTGYSTAAKEI 565

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                   +P +  +L++R+  K+KST  + L   +     R+HT ++     TGRL+S 
Sbjct: 566 EGLAKVNPHPFLDYLLKFRESQKMKST-VEGLIKAV-ADDGRIHTTFNQTVAATGRLSST 623

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIP++T+ G++IR AF+      +LI+ADYSQIE+R++AH+++   L + +    
Sbjct: 624 EPNLQNIPVRTEFGRRIREAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEAYRQGE 683

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  V +++FGV I++V+P++RR  K +++ + YG+S F LA QL IP+ EA   ++ Y
Sbjct: 684 DLHNYVGSKVFGVGIDEVTPELRRRVKAMSYGLAYGLSAFGLAQQLDIPQREAKKLMEDY 743

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+ K     R++G+  T+F RR +  E+N+     R+  ERAA+N+PIQGS
Sbjct: 744 FERFGGVRDYLHKVVEQARKDGFTATMFDRRRYLPELNADNRIARDNAERAALNSPIQGS 803

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V  +L    L +++LLQ+HDELV EV + E     +++   M+ A    
Sbjct: 804 AADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVEVADGEEAAIKELLHREMDSAA--- 860

Query: 956 INLRVPLKVNIKVSNNWQ 973
             L VPL V+I    NW 
Sbjct: 861 -ELLVPLDVSIGAGVNWD 877


>gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
 gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
          Length = 875

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/984 (32%), Positives = 496/984 (50%), Gaps = 119/984 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+    ++E    +
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM----KEEINPDY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD+
Sbjct: 55  IVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ DKD +QL +    +  T K     E  D   +I+++G+ P
Sbjct: 115 IGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L                E 
Sbjct: 175 KEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVL----------------EN 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +                           G +L   L       + ++   T  C+ 
Sbjct: 219 IENIK---------------------------GKKLKENLHEYREQAIFSKKLATIICN- 250

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V +D++  + K              +  +F SL ++  K   E+           
Sbjct: 251 -----VPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKSAEEE----------- 294

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     SY  IV+ ++ +     +            D    F  + I +   +  +
Sbjct: 295 ----TVEEEVSYKNIVSLEEFKDLKNNIIKYK------ENDLYLYFELEDIVLFSKSRIK 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +FK E   ID            N   ++ +   K+ FE++   KI ++ K  + +L
Sbjct: 345 TLYANFKDEVYRIDF-------EMLLNNTKEQFIEVCKEIFESKEIKKITYDAKNPRTIL 397

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            + GI   G   DI L +Y++D  R  ++I+S+A ++L        E LK          
Sbjct: 398 RKLGIEFNGIKFDINLAAYLIDPVRKEYEISSLASEYLFKNINREDEFLK---------- 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                     I+  N++  L+ +L  K+  + +  +  ++++P+ + +S ME  G ++D+
Sbjct: 448 ----------IKEVNIMPNLYKVLEEKIKDQDMEELLYKVEQPLTETLSAMETEGFKVDK 497

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D+L Q+  +    + S +  IY +S E+FN++SPKQLG ILF KL  P   KTKTG + T
Sbjct: 498 DILLQLEKKFKGEIESTQLEIYSMSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YST 556

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ L+++    +PII  I  +RQL+KI STY + L   I++  + +H+ ++   T TGR
Sbjct: 557 NAEVLDKLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDEDGK-IHSNFNQTVTATGR 614

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIPIK ++G++IR+ FI       ++SADYSQIELR+LAHI+    +   F
Sbjct: 615 LSSTEPNLQNIPIKYEMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAF 674

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   A+E+F V IE+V+P MR +AK +NF I+YGI  F L+  L I R EA  Y
Sbjct: 675 NEHDDIHTKTASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQY 734

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y  R+P +  Y+E       + GYV TI  RR +  E+ S    ++   ER A+N+P
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSP 794

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM++VH+ L++    + ++LQ+HDEL+  V ++E+     ++   ME+ 
Sbjct: 795 IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVEKEMEQV 854

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
               + L+V L V+I + NNW E 
Sbjct: 855 ----LELKVGLDVDINIGNNWYEA 874


>gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
 gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
          Length = 866

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/976 (32%), Positives = 504/976 (51%), Gaps = 119/976 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+ ++ + +    +    
Sbjct: 2   KRLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKMREDIKPD----YIVCT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII + 
Sbjct: 57  FDKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + +
Sbjct: 117 AKVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTA  L++EYG++                E +LE  +  
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSV----------------EAVLENIDNI 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      +G +L   L       + ++   T   +     
Sbjct: 221 ---------------------------SGKKLKENLTEYSEQAIFSKKLATIMTNV---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+  D++  ++K    + ++         Q  S+ D+ S                     
Sbjct: 250 PIDFDLDEIKSKDDYNKDQLK--ALFTKLQMKSILDKLSNG------------------- 288

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                +   KI N ++ ++  +  + I                 + + I  + L+++  +
Sbjct: 289 EEEEPEIEVKITNIENSKELEELFKNIN----------------EEVYINFTYLNKEKYS 332

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + +++ IFI+        +  +    +E +   K+FFENE  LK G++IK     L + G
Sbjct: 333 TIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEDILKNGYSIKNALTALKKLG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I   G   D  L +Y++DS +  + + S+   +LS                 K  + +  
Sbjct: 393 IDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-----------------KFPNVKEG 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S ME  G ++++++L ++S
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSSMESIGFKVNKNILDELS 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P   KTKTG + T A+ LE+
Sbjct: 496 IKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII+ I  +RQLSKI STY + L + I+       TF +   T TGRL+S EPN
Sbjct: 555 LK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGSIHSTF-NQTVTTTGRLSSTEPN 612

Query: 720 LQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ FI       LISADYSQIELR+LAHI+    +   F +  DIH
Sbjct: 613 LQNIPIKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIH 672

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L I R EA +Y+  YF R
Sbjct: 673 TKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFER 732

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EYI K  +  +  GYV T+  RR +  E NS    ++ + ER A+NAPIQG+AAD
Sbjct: 733 YPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANSSNKIVKALGERLAMNAPIQGTAAD 792

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V+  L++  L +K++LQ+HDEL+  V + E+    +++   ME      I L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKLLKEEMEN----TIKL 848

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V++ V  +W +
Sbjct: 849 SVPLDVDVNVGEDWYK 864


>gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977]
 gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus]
          Length = 902

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/981 (28%), Positives = 463/981 (47%), Gaps = 101/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            K+  L L+DG+S  +RAFYA P  + +   GL  NA+ GF +ML  LL++       +H
Sbjct: 10  TKQPTLLLLDGNSLAFRAFYALPAENFKTQSGLTTNAVYGFTSMLINLLRDE----APTH 65

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR++ YP+YKA R   P+    Q+ + +   QA GI  +  +GFEADDI
Sbjct: 66  VAAAFDVSRKTFRSDRYPEYKATRSATPDEFRGQIDITKEVLQALGITVLAEEGFEADDI 125

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT     + EGF V +++ D+D +QLV+    +    K      +   E V++K+G+ P
Sbjct: 126 IATLATQGQAEGFKVFVVTGDRDSLQLVNEDVTVLYPRKGVSDLTRFTPEAVVEKYGLTP 185

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++  A  ++  K  +++   
Sbjct: 186 SQYPDFAALRGDPSDNLPGIPGVGEKTASKWILEYGSLQELVDKADTVRG-KVGDSLRAN 244

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +      L    TD                               L+  V   Y    
Sbjct: 245 LASVI----LNRELTD-------------------------------LVRTVPLPYVPAQ 269

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             + P   D                        +F  L D+  +      P+     +L 
Sbjct: 270 LALAPWDRD---------------QIHRLFDDLEFRVLRDRLFETLEAVEPEVDEGFQLA 314

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +            +    +  W+ +    G  S   +  T   +     A+AI++ D 
Sbjct: 315 GQA------------LEPGTVAAWLAEHTGDGRRSGLAVVGTYTPYDGDATAVAIASADG 362

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                                      T+T +  + L ++  +    K  H  K     L
Sbjct: 363 DGAY-------------------IDTTTVTPDDEAALAEWLADAARPKALHEAKQAIHAL 403

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKI 533
              G  + G   D  L +Y++  G+ S  +  ++ ++L      ++  + + S +  D  
Sbjct: 404 AGRGWELGGVTSDTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDDGEQQLSLLDEDGA 463

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            D++  +  +  +  ++ L   L  +L   +   +   ++ P+  V++ +E  GI +D D
Sbjct: 464 GDAKAAQAQMLRARAVIDLADALDVELERIESAGLLTDMELPVQRVLAGLESVGIAVDTD 523

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L  +  + +  +    +  Y + G++ NL SPKQL  +LF +L  P   KTKTG     
Sbjct: 524 HLSSLQNQFASGIREAADAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKKTKTGYTTDA 583

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                  +   +P ++++L  R ++++K T  D L   +     R+HT ++     TGRL
Sbjct: 584 DALQTLFDKTGHPFLEHLLTHRDVTRLKVT-VDGLLKSVAADG-RIHTTFNQTIAATGRL 641

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIP++T+ G++IR  F+     + L++ DYSQIE+RI+AH++    L + F 
Sbjct: 642 SSTEPNLQNIPVRTEAGREIRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFN 701

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  VAA  FGV I++V+ ++RR  K +++ + YG+S + LATQL+I   EA + +
Sbjct: 702 TGEDLHSFVAARAFGVPIDEVTAELRRRVKAMSYGLAYGLSAYGLATQLKISNDEAKEQM 761

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF RF G+ +Y+    +  R++GY  T+ GRR +  +++S     R   ERAA+NAPI
Sbjct: 762 DQYFSRFGGVRDYLRAVVDQARKDGYTSTVLGRRRYLPDLDSGDRLRREAAERAALNAPI 821

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI+  K+L D  L ++MLLQ+HDEL+FEV E E  +   ++  +M  A 
Sbjct: 822 QGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVRKTMGSA- 880

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
                L VPL+V++    +W 
Sbjct: 881 ---YPLDVPLEVSVGYGRSWD 898


>gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
 gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
          Length = 881

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/989 (30%), Positives = 489/989 (49%), Gaps = 123/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A           DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDA- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 60  ---ALVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++                EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSM----------------ENL 220

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               +  + S+              L+  ++ D +                +++   T D
Sbjct: 221 YANVDDMKKSK--------------LKENLINDKD-------------NAFLSKQLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    P+ +D+                D T        L D  +K+N     +K+   
Sbjct: 254 RDA----PLTVDLA---------------DVTYAGPDLDKLRDFYTKMNMNSLLKKIGGS 294

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             + +     +      +++    Q  +   +     +F+I     +   ++ I   I T
Sbjct: 295 VAKPVQAVHFS------VLDE---QSILALTKLTEPLTFEIEMLEDNYHVAEQIGFFIGT 345

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            ++   +                        +T   L  +K++ E+        + K + 
Sbjct: 346 KEETYVS----------------------TDVTLLTLPAVKRWLEDAKRDLTVFDGKRNI 383

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           +  +R G+ +     D++L SY+++   +S+D+  IA+      L        K  K  +
Sbjct: 384 VAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQV 443

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D     Q        S+ +  L   L   L  +    ++  ++ P+  V+++MEI GI
Sbjct: 444 PEDDKLFGQF----ARKSDALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG
Sbjct: 500 TLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+       +PI+++IL++R  +K+ STY   L         ++HT Y    T
Sbjct: 560 Y--STSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPD-HKIHTRYLQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PN+QNIP + + G+ IR+AF+      ++ S+DYSQIELR+L+HI+    +
Sbjct: 617 QTGRLSSVDPNMQNIPARDE-GKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENM 675

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R 
Sbjct: 676 QEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRK 735

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER 
Sbjct: 736 QAKAFIDGYFDQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERT 795

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++  
Sbjct: 796 AMNTPIQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELVPK 855

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    ++L VPLKV       W + 
Sbjct: 856 VMDSA----VHLDVPLKVESHYGPTWFDA 880


>gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
 gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
          Length = 866

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/975 (32%), Positives = 504/975 (51%), Gaps = 119/975 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+ ++ + +    +    
Sbjct: 2   KRLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKMREDIKPD----YIVCT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII + 
Sbjct: 57  FDKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + +
Sbjct: 117 AKVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTA  L++EYG++                E +LE  +  
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSV----------------EAVLENIDNI 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      +G +L   L       + ++   T   +     
Sbjct: 221 ---------------------------SGKKLKENLTEYSEQAIFSKKLATIMTNV---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+  D++  ++K    + ++         Q  S+ D+ S                     
Sbjct: 250 PIDFDLDEIKSKDDYNKDQLK--ALFTKLQMKSILDKLSNG------------------- 288

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                +   KI N ++ ++  +  + I                 + + I  + L+++  +
Sbjct: 289 EEEEPEIEVKITNIENNKELEELFKNIN----------------EEVYINFTYLNKEKYS 332

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + +++ IFI+        +  +    +E +   K+FFENE  LK G++IK     L + G
Sbjct: 333 TIEIDKIFINYDEKNYLINFKELVKEEENIKAFKEFFENEDILKNGYSIKNALTALKKLG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I   G   D  L +Y++DS +  +++ S+   +LS                 K  + +  
Sbjct: 393 IDFNGLAFDCELAAYLIDSSKGEYNLLSLINNYLS-----------------KFPNVKEG 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S ME  G ++++D+L ++S
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSSMESIGFKVNKDILDELS 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P   KTKTG + T A+ LE+
Sbjct: 496 IKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII+ I  +RQLSKI STY + L + I+       TF +   T TGRL+S EPN
Sbjct: 555 LK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGSIHSTF-NQTVTTTGRLSSTEPN 612

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ FI       LISADYSQIELR+LAHI+    +   F +  DIH
Sbjct: 613 LQNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIH 672

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L I R EA +Y+  YF R
Sbjct: 673 TKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFER 732

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EYI K  +  +  GYV T+  RR +  E N+    ++ + ER A+NAPIQG+AAD
Sbjct: 733 YPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAAD 792

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V+  L++  L +K++LQ+HDEL+  V + E+    +++   ME      I L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKLLKEEMEN----TIKL 848

Query: 959 RVPLKVNIKVSNNWQ 973
            VPL V++ V  +W 
Sbjct: 849 SVPLDVDVNVGEDWY 863


>gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
 gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
          Length = 908

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/979 (33%), Positives = 503/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEILIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +LRI + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELRITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A      
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
 gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
          Length = 908

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/979 (33%), Positives = 503/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A +    
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI---- 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101]
 gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101]
          Length = 866

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/976 (32%), Positives = 504/976 (51%), Gaps = 119/976 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+ ++ + +    +    
Sbjct: 2   KRLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKMREDIKPD----YIVCT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII + 
Sbjct: 57  FDKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AE EG  V II+ DKD +QL +    +  T K     E  + + +++++G+ P + +
Sbjct: 117 AKVAEGEGIEVYIITGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTA  L++EYG++                E +LE  +  
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSV----------------EAVLENIDNI 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      +G +L   L       + ++   T   +     
Sbjct: 221 ---------------------------SGKKLKENLTEYSEQAIFSKKLATIMTNV---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+  D++  ++K    + ++         Q  S+ D+ S                     
Sbjct: 250 PIDFDLDEIKSKDDYNKDQLK--ALFTKLQMKSILDKLSNG------------------- 288

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                +   KI N ++ ++       I                 + + I  + L+++  +
Sbjct: 289 EEEEPEIEVKITNIENNKKLEDLFNNIN----------------EEVYINFTYLNKEKYS 332

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + +++ IFI+        +  +    +E +  LK+FFENE  LK G++IK     L + G
Sbjct: 333 TIEIDKIFINYDEKNYLINFKELAQEEENIKALKEFFENEDILKNGYSIKNALTALKKLG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I  +G   D  L +Y++DS +  + + S+   +LS                 K  + +  
Sbjct: 393 IEFKGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-----------------KFPNVKDG 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S ME  G ++++D+L ++S
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSSMESIGFKVNKDILDELS 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P   KTKTG + T A+ LE+
Sbjct: 496 IKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII+ I  +RQLSKI STY + L + I+       TF +   T TGRL+S EPN
Sbjct: 555 LK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGSIHSTF-NQTVTTTGRLSSTEPN 612

Query: 720 LQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ FI       LISADYSQIELR+LAHI+    +   F +  DIH
Sbjct: 613 LQNIPIKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIH 672

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L I R EA +Y+  YF R
Sbjct: 673 TKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFER 732

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EYI K  +  +  GYV T+  RR +  E N+    ++ + ER A+NAPIQG+AAD
Sbjct: 733 YPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAAD 792

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V+  L++  L +K++LQ+HDEL+  V + E+    +++   ME      I L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKLLKEEMEN----TIKL 848

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V++ V  +W +
Sbjct: 849 SVPLDVDVNVGEDWYK 864


>gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
 gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
          Length = 908

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/979 (33%), Positives = 501/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ ++    KE    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFII----KEKNPKHL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++  E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMGNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A      
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
 gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
          Length = 912

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/985 (28%), Positives = 449/985 (45%), Gaps = 106/985 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H A
Sbjct: 19  RPRLLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQ----PTHVA 74

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNEIY +YKANR + P     Q+ L++    A  +P I  +G+EADD+IA
Sbjct: 75  VAFDVGRKTFRNEIYAEYKANRSESPTDFRGQVSLIQEVLAALHVPVITAEGYEADDVIA 134

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T T  A ++G  V I + D+D +QLV+    +    K      +   E V  K+G+ P +
Sbjct: 135 TLTVAAVEQGMDVLICTGDRDALQLVNEHVTVLYPRKGVSDLTRFTPEEVEAKYGLSPAQ 194

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+P IP +G KTAA  ++EYG+L+ ++     +K K           
Sbjct: 195 YPDFAALRGDPSDNLPSIPSVGEKTAAKWVREYGSLDALVDQVDTVKGKV---------- 244

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                                         G +L   L ++   + +  +      +   
Sbjct: 245 ------------------------------GEKLREHLSSVLQNRRLTELDRAVPLELGP 274

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +  V   +  E             T     QF  L D+     +   P+      +   
Sbjct: 275 ADLAVRAWDRNE-----------VHTLFDNLQFRVLRDRLFATLTSAEPEAEGGFDVADD 323

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                W+ +          I   T      +   IA++  D   
Sbjct: 324 EVPAGGLG------------AWLDQHARTSRTGI-IFRGTWGRGTGELTGIALAGGDD-- 368

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    F+DL      D+  +          L  +  +    K+ H +K   L +  
Sbjct: 369 ------HATFVDLGP--GLDAVDEQ--------ALADWLADPDAQKVVHEVKGPLLAVWA 412

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SD 535
            G  + G   D  L +Y+   G+ S D+A +A ++L    K+   + ++ + +D +  S+
Sbjct: 413 RGWDLAGVVSDTALAAYLALPGQRSFDLADLAVRYLRRELKDSA-AEETQLTLDGMGPSE 471

Query: 536 SQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             +   A       +  +  L   L   L       +   ++ P+  V+++ME  GI  D
Sbjct: 472 EDLAREAAHADVLKAVAVNDLSDALDSLLGQRGGDALLGGIELPLTFVLARMEQRGIAAD 531

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D L ++  E +  + +     Y + G + NL SPKQL  +LF +L  P   K K+G   
Sbjct: 532 LDFLHELQREFADGVAAAAAEAYAVIGREVNLGSPKQLQAVLFDELGLPKTKKIKSGYTT 591

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
                   +    +P ++++L  R +++++ T  D L   ++    R+HT +      TG
Sbjct: 592 DAEALTNLLAQTGHPFLEHLLRHRDVTRLR-TVIDGLIPMVD-DGGRIHTTFQQTIAATG 649

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIPI+T  G++IR+AF+     + L++ADYSQIE+RI+AH++    L + 
Sbjct: 650 RLSSIDPNLQNIPIRTAEGRRIRQAFVVGSGHESLMTADYSQIEMRIMAHLSGDAGLIEA 709

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F +  D+H  VA+  + + IE V P+MRR  K +++ + YG+S + LA QLRI   EA +
Sbjct: 710 FTSGEDLHSFVASRAYDIPIEDVDPEMRRRIKAMSYGLAYGLSAYGLAGQLRISVEEARE 769

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            +  YF RF GI EY++   +  RQ GY ET  GRR +  ++ S     R + ER A+NA
Sbjct: 770 QMHAYFERFGGIREYLDGVVDDARQTGYTETTLGRRRYLPDLTSDNGQRRQMAERMALNA 829

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAAD+ + AM+ V +++ D  L ++MLLQ+HDELV EV   E      ++   M  
Sbjct: 830 PIQGSAADVIKVAMLRVEQAIADEGLRSRMLLQVHDELVLEVAPGEREALETLVRREMAG 889

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A      L VPL+V++     W E 
Sbjct: 890 AA----QLSVPLEVSVGFGRTWDEA 910


>gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
 gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
          Length = 893

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/980 (27%), Positives = 462/980 (47%), Gaps = 96/980 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L ++DG S  +RAF+A P        G   NA+ GF +ML  L++N +     +H  
Sbjct: 2   RPRLLIIDGHSMAFRAFFALPADKFMTSGGAYTNAVHGFISMLATLIKNEQ----PTHVG 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD  A TFR E++P YK  R   PE    Q+ L++    A  I  +E   FEADDI+A
Sbjct: 58  VAFDAGAHTFRTEVFPQYKGTRDATPEPFKGQVALIKEVLDAMNIRYLEKDRFEADDILA 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T++  A + G  V + S D+D +QLV+    +   VK     ++   E V +K+G+ PE+
Sbjct: 118 TWSTCAAEAGMEVLLCSGDRDTLQLVNDHVTVLYPVKGVSELKRYTPEAVEEKYGVRPEQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G KTAA  + ++G+L  +L +A  IK K           
Sbjct: 178 YPDLAALVGETSDNIPGVPGVGPKTAAKWVNQFGSLTEVLNSAETIKGKV---------- 227

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                                         G +L   L  +   + INR+ T  D D   
Sbjct: 228 ------------------------------GEKLRDHLDQVRQNREINRLLTDVDLD--- 254

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           + P  L +   +   +    ++    T++    + +       + E    +    ++ ++
Sbjct: 255 VMPNDLTVQQWDRNKLHEIFDMLEFRTLRERLLAMMGAVDQGTHDEGGAAQGASTQIMEV 314

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   +               QW+                           + ++   +  
Sbjct: 315 AAGEL--------------AQWLSSTRQP---------------------MGLAVAGKGV 339

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            +      I +  +  ++   T       + ++ L+++  + H+ KI H+ K     LH 
Sbjct: 340 PSRGTAWQIALSATPESAVVVTLDELSDADSVA-LRQWLMDPHYPKIVHSAKEAWHALHS 398

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           +   ++G   D  L +Y+    + S+ +  ++ +++S     +    + S+ +       
Sbjct: 399 FSGGVKGVIADTELAAYLAFPDQRSYGLEDLSIRYVSRDITPVAHQAQGSLDLGLDDTDD 458

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                   + V+ QL   L  +L    L  +Y+ ++ P+  V++QME  G+ +D + L+ 
Sbjct: 459 ALRALANRAAVLPQLAQALDAELSDRSLTALYQEMELPLTVVLAQMEHVGVAVDLEQLRS 518

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + A  +      ++  ++  G + NL SPKQL ++LF +L  P   K KTG     A   
Sbjct: 519 LDAFFAHQGSEAQKAAFEAIGRQVNLGSPKQLQEVLFDQLDMPKTKKIKTGYTTDAASLA 578

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           +      +P ++++LE+R  +K++ T  + L   +     RVHT +      TGRL+S +
Sbjct: 579 DLFVKTGHPFLQHLLEYRDSTKLRQT-VEGLLKSV-ADDGRVHTTFQQTVAATGRLSSTD 636

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+T+ G++IR+ F+       L++ADYSQIE+RI+AH+++   L   F+   D
Sbjct: 637 PNLQNIPIRTETGRRIRQGFVVGEGLDTLLTADYSQIEMRIMAHLSQDDGLISAFQAGED 696

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H  V A +FGV+I++V+PQMR   K +++ + YG+S F L+ QL I   EA+  +  YF
Sbjct: 697 LHNFVGARVFGVSIDEVTPQMRSKVKAMSYGLAYGLSAFGLSKQLNISVGEASTLMDDYF 756

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RF G+ +Y+       R  GY ETI GRR +  ++ S     R   ER A+NAPIQGSA
Sbjct: 757 TRFGGVRDYLTSVVARARTTGYTETIMGRRRYLPDLTSDNRQRRENAERVALNAPIQGSA 816

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ ++AM+ V  +     L++++LLQIHDEL+ EV   E   A +I+   M  A     
Sbjct: 817 ADVIKQAMLGVDAAFRSEGLSSRLLLQIHDELIVEVAPGEQEIAERIVREEMAGAM---- 872

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V++    NW +  
Sbjct: 873 QLSVPLAVSVGTGQNWHDAG 892


>gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72]
          Length = 880

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/991 (32%), Positives = 491/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLPQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  IET       +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQIETLSKFYDEMGFKQLK------AQLGTSQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + + +  
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVGL-- 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKVQVLLETEKPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IY+L+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYNLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP  E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583]
 gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583]
          Length = 880

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/984 (29%), Positives = 504/984 (51%), Gaps = 118/984 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              + L+DG S + RAFY  P L+   +GL  NAI GF N+L+K+L+  + +    +  V
Sbjct: 2   REKILLIDGHSILNRAFYGLPDLTNA-EGLHTNAIYGFLNILFKILEEEKPD----YLTV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++ Y  YK  R  +P  L  Q+P+++    A G+  I  +G+EADD++ T
Sbjct: 57  AFDLHAPTFRHKQYEAYKGTRKPMPMELREQIPVMKDVLSAMGVTMITKEGYEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
               +E++G  VTI+S D+DL+QL S   C+     +      E      V + + + P 
Sbjct: 117 VAKKSEEKGMDVTILSGDRDLLQLASSHICIRIPKTKGGKTTIEDYYENDVKEAYQLTPL 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L+AL GD+ DNIPG+PG+G KTA  +L EYG +EN   +A  +K            
Sbjct: 177 QIIELKALMGDTADNIPGLPGVGEKTATKILLEYGTVENAKAHAEELK------------ 224

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                                         N  +  +FL+  +   L   +AT       
Sbjct: 225 -----------------------------PNKAK-TAFLEHYDLAVLSKELAT------- 247

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                           I I++ I+ D   + ++  +L    +    ++   K FL R + 
Sbjct: 248 ----------------ICIDSPIEYD--WEGAKIHNLYTPEAYEFFKELEFKNFLSRFED 289

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
             +     +S+  I +  + ++  ++         +++ +       + + + ++  +++
Sbjct: 290 TGEENKIEESFRYITDFTETEKIFERALEEPVVGIELLEE-----KGQILGLGLAWGEEE 344

Query: 418 DDTSFKVETIF--IDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +    +   F   D  +  +Q+    GK   +  I + L+             ++K   
Sbjct: 345 TEVYSILPQGFVTEDYLIEKTQEFCQQGKLIASLNIKAMLR-----------YMDLKSH- 392

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEILKSRKSSIPID 531
                         D  L +Y+L+  +S +    IA+++L      KE L  + S I   
Sbjct: 393 ----------NDMFDAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGKLSYIKAA 442

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              + ++ +     +   L+    L   L  E +  +Y  ++ P++  ++ ME  GI ++
Sbjct: 443 NEKEEELAKSVCYMAYTALKSRTSLLEALEKENMKELYTDMEMPLLFTLADMEKEGILVE 502

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + LK+   ++   + +LE+ I++ +GE+FN++SPKQLG ILF KL+ P G KTKTG   
Sbjct: 503 AEALKEYGEKLQVRIEALEKEIWEQAGEEFNINSPKQLGVILFEKLELPGGKKTKTGY-- 560

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +TA D+ +    ++ ++ +ILE+RQL+K+KSTYAD L N+I +   R+H+ ++   T TG
Sbjct: 561 STAADVLEKLAPEHKLVADILEYRQLTKLKSTYADGLANYIAEDG-RIHSTFNQTITATG 619

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R++S EPNLQNIP++T+LG+ +R+ FI       + ADYSQIELR+LAH++    L Q +
Sbjct: 620 RISSTEPNLQNIPVRTELGRLLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAY 679

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           + + DIHR+ A+++F +  ++V+P  RR+AK +NF I+YGIS F L+  L I R EAA Y
Sbjct: 680 QEAQDIHRITASQVFHIPFDEVTPLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQY 739

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF  +P I  +++      ++ GYV T+F RR    E+ S     R+  ER A+N+P
Sbjct: 740 IESYFQTYPKIKGFLDGLVEEAKEKGYVSTLFHRRRPVPELKSSNFMQRSFGERVAMNSP 799

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI V+K L++  L ++++LQ+HDEL+ E  +EE+   S I+   M++A
Sbjct: 800 IQGTAADIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEA 859

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
                +L V L++++    NW E 
Sbjct: 860 A----HLSVALEIDMHTGENWYEA 879


>gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705]
 gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705]
          Length = 955

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/993 (27%), Positives = 476/993 (47%), Gaps = 77/993 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 11  NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 67  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + +I K+ + P +
Sbjct: 127 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKYKVTPAQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 187 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 245

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A 
Sbjct: 246 QVKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGAK 305

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                       N+    +    E+ ++
Sbjct: 306 ------------------------------------------ASNTSGAGESTNNEQNEQ 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIA 408
            S   +N    T I   +   +WV+    +++  G  +   ++D  D     A     + 
Sbjct: 324 DSSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVG 383

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H 
Sbjct: 384 HAWTVAAWGDERPGRATAQAIAVATATSA-AIVSLPITDTLRAQLAQFLKSEHSRTIVHG 442

Query: 469 IKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            K    +L    + +     D  L  Y+      +  +   A+ +L     E  +  + +
Sbjct: 443 YKELLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGT 502

Query: 528 IPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +  D    +    E  + +  +I  L + L P +   +   +   ++ P+  V+  ME T
Sbjct: 503 LDFDDDQVEEDPNELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHT 562

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +      +TK
Sbjct: 563 GAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMGLKPTKRTK 622

Query: 647 TGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N   +R+H
Sbjct: 623 SGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIH 681

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILA 759
           T +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A
Sbjct: 682 TTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMA 741

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S + LA 
Sbjct: 742 DLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQ 801

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S     
Sbjct: 802 QLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVA 861

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+   E   
Sbjct: 862 REAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQ 921

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++ ++ME A    ++L VPL V+  + ++W
Sbjct: 922 VTELVRNAMEHA----VDLAVPLDVSCGIGSDW 950


>gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 955

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/993 (27%), Positives = 475/993 (47%), Gaps = 77/993 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 11  NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 67  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + +I K+ + P +
Sbjct: 127 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKYKVTPAQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 187 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 245

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A 
Sbjct: 246 QVKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGAK 305

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                       N+    +    E+ ++
Sbjct: 306 ------------------------------------------ASNTSGAGESTNNEQNEQ 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIA 408
            S   +N    T I   +   +WV+    +++  G  +   ++D  D     A     + 
Sbjct: 324 DSSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVG 383

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            A +     D+   +     I ++  TS  +     +T  + +   +F ++EH   I H 
Sbjct: 384 HAWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQFARFLKSEHSRTIVHG 442

Query: 469 IKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            K    +L    + M     D  L  Y+      +  +   A+ +L     E  +  + +
Sbjct: 443 YKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGT 502

Query: 528 IPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +  D    +    E  + +  +I  L + L P +   +   +   ++ P+  V+  ME T
Sbjct: 503 LDFDDDQVEEDPNELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHT 562

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +      +TK
Sbjct: 563 GAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTK 622

Query: 647 TGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N   +R+H
Sbjct: 623 SGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIH 681

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILA 759
           T +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A
Sbjct: 682 TTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMA 741

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S + LA 
Sbjct: 742 DLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQ 801

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S     
Sbjct: 802 QLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVA 861

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+   E   
Sbjct: 862 REAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQ 921

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++ ++ME A    ++L VPL V+  + ++W
Sbjct: 922 VTELVRNAMEHA----VDLAVPLDVSCGIGSDW 950


>gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo]
 gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo]
          Length = 889

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/957 (33%), Positives = 494/957 (51%), Gaps = 76/957 (7%)

Query: 24  PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKAN 83
           PLL+ +  G  VNA  GF   L+ ++    KE    H  + FD    TFR + YP+YKA 
Sbjct: 5   PLLNTR--GENVNAFIGFFKTLFFII----KEKNPKHLIITFDSEIPTFRKQKYPNYKAT 58

Query: 84  RPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD 143
           R   P+ L+PQ+  ++       IP  EI+G+EADD++A++   A K  +   IIS DKD
Sbjct: 59  RDAPPDDLIPQIGWIKEGLLKAKIPIFEIEGYEADDLLASFAKKAAKNNYLTYIISPDKD 118

Query: 144 LMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
           L+Q +S    +         ++D E+VIKK+GI   ++    A+ GD  DNIPGI GIG 
Sbjct: 119 LLQTMSEHIKILKIENNSFVEMDNEYVIKKFGINSFQIKDYLAIVGDRSDNIPGIKGIGP 178

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           K AA LL+E+  L+ I  N   I  KK +E +++  E A LS  LV L  D+ I   +E+
Sbjct: 179 KGAANLLREFKTLKGIYSNLELI-SKKHQEILIKEKENAFLSYDLVSLEEDLKIP-EIEN 236

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
             L++ +   LIS  +      LI     TY  D    E                     
Sbjct: 237 FSLKNFSKE-LISLFEKHSAISLIK----TYKKDILKQE--------------------- 270

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
            +   + S F+               Q+   + L  L+     N  Y  I   K++   +
Sbjct: 271 EENVAQKSLFT---------------QEPIADNLDTLNTIDTENVKYHSITTKKELDNLI 315

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L+     S    T ++D + ++ I I+IS  + +          +I +      ++ G
Sbjct: 316 ESLKKAKYISIDTETSSLDIYTARLIGISISFKEFEG--------YYIPI------EAKG 361

Query: 442 KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGFEDIMLMSYVLDSG 499
           K  + K  I+      FE+ +   IG N K+D  +L   G S +  + D M+ +Y++D+ 
Sbjct: 362 KIYIEKHYIIQKFNNLFES-NPKIIGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTN 420

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
            S   +  +A+K+L +   +     + +     IS      ++ E++++  +L+ +   K
Sbjct: 421 -SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNIFTKK 479

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L  + L  +   ++ P  +V+ +ME  GI +D++ LK+   E+ + L  +E  I    G 
Sbjct: 480 LKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEIIKSIGI 539

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+SPKQ+ +ILF KL      K K      T   + +   G +  I+NI++ RQ++K
Sbjct: 540 NFNLNSPKQMHEILFEKLNLKLPEKMKKDS---TDIKVLESLIGQHESIENIIKHRQIAK 596

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D+L   IN +T R+HT +    T TGR+ S+ PNLQNIPIK + G+KIR+AF  
Sbjct: 597 LKSTYTDNLIELINHKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRKIRKAFKP 656

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                 ISADYSQIEL ILAH+++   L + FEN+ DIH   A+++F +  ++++P +RR
Sbjct: 657 ENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKEITPDLRR 716

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK+INF IIY +S FRLA +L I + EA  +I  YF  +P I E+I    NFVR  GY 
Sbjct: 717 IAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIKEFITNQINFVRNTGYS 776

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ETI  RR +  EINS     R+  ER AIN+ IQGSAADI + AM+ V    +  K+ +K
Sbjct: 777 ETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAADIMKIAMVRVFNEFKSKKMESK 836

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +LLQ+HDE++ E P +E     +I+   ME A      L +PL+ NI+   +W E +
Sbjct: 837 ILLQVHDEMLIESPIKEKNEVEKILKIMMETA----YTLNLPLRANIETGKSWGEIH 889


>gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
 gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
          Length = 895

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/990 (31%), Positives = 498/990 (50%), Gaps = 111/990 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  +RAFYA    L R   H GL  NA+  F N L +++   + +  
Sbjct: 1   MTKK--LLLIDGNSLAFRAFYAMYNQLDRMISHKGLHTNALVAFNNFLDQIVDPMQPDL- 57

Query: 58  ASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                V +D      TFR E++P+YK  R K P     Q P +R      G+   E  G 
Sbjct: 58  ---AVVAWDAASGKETFRGELFPEYKDGRSKTPSEFQEQFPYLREMVALHGLRNYEQPGL 114

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADDII T++ + EK G++VTII+ D+DL QL +    +  T K     E+    +++ K
Sbjct: 115 EADDIIGTFSRMGEKAGYSVTIITGDQDLTQLATEKVTVNVTKKGVTEIEQYTPSYIMDK 174

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +G+ P +++  +ALTGD+ DN PG+  +G KTA  LL EY +++N+  +   +KQ K +E
Sbjct: 175 FGLKPLQIIEKKALTGDTSDNYPGVTKVGEKTALKLLTEYHDIDNLYAHIDDMKQSKLKE 234

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N+++                                +                  R   T
Sbjct: 235 NLIK--------------------------------DREA-----------AFCARQLAT 251

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
              DA     + L +   E + I  +  +     +          Q +KI + Q   ++ 
Sbjct: 252 ILTDAT----LELPLEEIEYRHIDYDKLVTFYEDLD------FKQQLAKIKALQKSGQII 301

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             + Q   +  IN  +  +                    +  I     +      I   I
Sbjct: 302 GSQTQTSVEKAINVVTLQE-------DNLQAVAMLGNKIALHIEMAGSNYHIDDMIGFVI 354

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
            +       S  V  +                         L+   EN   +K   N+K 
Sbjct: 355 GSPATGYYGSRDVSLLQRP---------------------ELRSVIENAAIIKNVFNVKA 393

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSS 527
             ++  R G+++RG   D +L +Y+LD+  + ++++++AQ++  Y   +     K  K +
Sbjct: 394 QFVLFKRLGMTLRGVEFDFLLAAYLLDTTDNDNELSTLAQRFDFYVTPDEDIYGKGAKYA 453

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P +    S+V  H    ++V++QL       L   +  H+Y  ++ P+  V++ ME  G
Sbjct: 454 VPEE---TSRVLVHLAHKADVLMQLEQPAFAALQDHEQTHLYTEIELPLAHVLADMEYRG 510

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I+IDQ  L+++  ++ + + +++E I+  +GE FN++SPKQLG +LF K+  P   KTKT
Sbjct: 511 IKIDQTRLREIGTDLEERIDTIKEAIFIEAGEVFNINSPKQLGILLFEKMGLPVIKKTKT 570

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+ +IL++RQL+K+KSTY D L + ++++  ++HT +    
Sbjct: 571 GY--STAVDVLEKLAPQAPIVDHILQYRQLAKLKSTYVDGLLSVVHEKDSKIHTRFLQTL 628

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++T+ G+KIR AF+   P  ++  ADYSQIELR+LAH+     
Sbjct: 629 TQTGRLSSIDPNLQNIPMRTEAGRKIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKN 688

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           + Q F N  DIH   A  +FG++    V P MRR AK +NF I+YGIS F LA  L I R
Sbjct: 689 MQQAFLNGEDIHAETARAVFGLDDNVPVDPLMRRTAKAVNFGIVYGISDFGLANNLGISR 748

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +EA  +I+ YF  FP IHE++ + K    + G++ETI  RR +  EI S   ++R+  ER
Sbjct: 749 AEAKRFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKRRRYLPEIGSKNFNLRSFAER 808

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AMI V  +L+++ +  +MLLQ+HDEL+FE P +EI   S+++ 
Sbjct: 809 TAMNSPIQGSAADIIKIAMIKVADALQENGMQARMLLQVHDELIFEAPSDEIAELSELVT 868

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             M+ A +    L VP+ V     N W E 
Sbjct: 869 RVMDSAVV----LDVPMLVESHSGNTWYEA 894


>gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76]
 gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017]
 gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027]
 gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141]
 gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244]
 gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012]
 gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031]
 gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043]
 gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312]
 gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341]
 gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
 gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
 gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467]
          Length = 882

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/990 (31%), Positives = 482/990 (48%), Gaps = 124/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L LVDG+S  +RAF+A        +  +GL  NAI  F NM   ++Q      +
Sbjct: 1   MTKK-KLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKE----M 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ 
Sbjct: 116 DDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  L                +KQ    E 
Sbjct: 176 GLTPKQIIDMKGLAGDTSDNIPGVTKIGEKTAIKL----------------LKQYGSVEG 219

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + E  +  + S+                  + E+    +  +FL          R+AT  
Sbjct: 220 VYENIDEMKKSK------------------MKENLINDKEQAFLSK--------RLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV +++     +G  +E  +     +   QF       +K++  + P     
Sbjct: 253 ----EVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQF------LAKLDITEEP----- 297

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                     + +  +  + +    + +   +      +  +     +   S  +   ++
Sbjct: 298 --------VEMEDILFEVVEDQLTNEMFTDDM------ALYVEMMEDNYHTSPIVG--LA 341

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             + K   +     +F                           +  +E   K  ++ K  
Sbjct: 342 WGNNKKIYTTNNLAVFES--------------------QPFIDWLMDETRKKNVYDAKRT 381

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        K  K  
Sbjct: 382 YVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKG 441

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P D+        H       I  L   L  +L  +    ++ +++ P+  ++  MEITG
Sbjct: 442 LPEDE---EVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILGDMEITG 498

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 499 IRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 558

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+ +IL +RQ++KI+STY + L   I    + +HT Y    
Sbjct: 559 GY--STAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNK-IHTRYVQTL 615

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+    
Sbjct: 616 TQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEH 675

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 676 LKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITR 735

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++R+  ER
Sbjct: 736 KQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAER 795

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+   +Q++ 
Sbjct: 796 TAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQLNQLVK 855

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME A    ++L VPL  +      W E 
Sbjct: 856 EVMEHA----VSLHVPLITDSSWGKTWYEA 881


>gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
          Length = 880

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/991 (32%), Positives = 491/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E        +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQVEALSKFYDEMGFKQLK------AQLGTTQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +     +                     F       +    + + +  
Sbjct: 304 PIEFTKVTEVTADMLGPEQF--------------------FYFEILGDNYHREEIVGL-- 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 AKVLLSHYGIELPAATFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
 gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
          Length = 960

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/984 (27%), Positives = 460/984 (46%), Gaps = 58/984 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + L ++DG S  +RAF+A P+ S     G P NA+ GF  ML  ++ N       +  AV
Sbjct: 14  DTLLVIDGHSLAFRAFFALPVESFTTSQGQPTNAVYGFLTMLSDVITNEH----PTRLAV 69

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRN++  +YK  R   P+ LL QLPL++ A QA G+  IE  G+E DD+I T
Sbjct: 70  AFDVKGGTFRNDLLEEYKGTREAAPQELLSQLPLIQQALQALGVTYIEQPGYEGDDVIGT 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              + ++ G  V ++S D+D  QL+   T +          + +    V +K+G+ P + 
Sbjct: 130 LASMGQQAGDRVLVLSGDRDAFQLIDDDTTVLYPGHHFKDLKHMTPAAVEEKYGVTPAQY 189

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G+  DNIPG+PG+G   AA  + +YG+L+ I+ +A +I  KK  E + +  + 
Sbjct: 190 PDLAALRGEKADNIPGVPGVGDGFAAKWIHQYGSLQGIIEHADQITGKK-GEALRDNIDQ 248

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             L+RK+  L  D+ + + ++ L   + +   L +   AL+F     R         +  
Sbjct: 249 VLLNRKVNALVRDLDLGVSVDDLTFGNVDHAELSALFSALQFGS-RTRTKILNAFSNSTA 307

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +P  +D++   +    ++  +    T   +  +        +  +               
Sbjct: 308 QPGAVDVDAIADSDQQLQIPVLDQVTDAAALIAWAEQYLPAVTDDTQTTNEPATGENAAG 367

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  I    + +  + ++              +       +   ++KP A ++ T+     
Sbjct: 368 RMDIVTQLHQQSNDCEE--------------AVNASWTLVAVGNAKPGASSLKTI-VLSA 412

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V     D S+H                  +++           H  K    +    
Sbjct: 413 QGHAVVVAMRDTSLH----------------DAVQQIISTHANTMSVHGYKALLHMAQSA 456

Query: 480 GISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS-- 536
           G+++     D  L  Y+ D   + H I   A+ +L      +    + ++  D + D   
Sbjct: 457 GLNVPIPLFDTKLAGYLADPDYTGHTIDEYAEHFLRIDVPAVQTQAQGTLDFDNMDDETP 516

Query: 537 -QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            Q  +     + ++  +   L  +L   +   +   ++ P+  V+ +ME  G  +D+  L
Sbjct: 517 TQDDKDLGLQAALVSAMARHLARELQQREQYALLRCIELPVSVVLYRMEQEGAAVDRMRL 576

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             + A  ++    +E   +D +G +FNLSSPK++G +LF  +      KTK+G + T A 
Sbjct: 577 DSLLATFAEESGRMERMAWDAAGSEFNLSSPKKIGKVLFEDMGLTPLRKTKSGHYTTNAA 636

Query: 656 DLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            L  +             +  IL  R ++K++     +L + IN+    +HT +      
Sbjct: 637 TLTTLYANAEEGSAAYVFLGAILRHRGVNKLQ-QIVQTLIDAINRTDGHIHTTFEQTVAA 695

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLY 768
           TGRL+S +PNLQNIP +   G+  R AFI       L+SADYSQ+ELR++A  +    L 
Sbjct: 696 TGRLSSTDPNLQNIPNRNAEGRDTRSAFIPAEGFDALLSADYSQVELRLMADFSGDEALI 755

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
             F++  D HR VA+ ++G+ ++ +S   R H K +++ + YG+S + L+ QL I   EA
Sbjct: 756 DAFKSGADFHRYVASLVYGIPVDDISGDQRSHVKAMSYGLAYGLSSYGLSQQLGITPKEA 815

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
               ++YF  F  +HEY+E      R+ GY ET+FGRR ++  + SP   +R   ERAA+
Sbjct: 816 DALKQQYFRTFGKVHEYLESLVATARERGYTETMFGRRRYFPALRSPNRMVREAAERAAL 875

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI   ++L    + ++++LQIHDELV ++   E  +A+ ++  +M
Sbjct: 876 NAPIQGSAADIMKMAMIRAERALRSQGMRSRIVLQIHDELVVQLAPGEHESATALVKDAM 935

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           E A    + L VPL V+  +  +W
Sbjct: 936 EHA----VQLAVPLDVSTGIGTDW 955


>gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 950

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/993 (27%), Positives = 476/993 (47%), Gaps = 77/993 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 6   NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 62  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIA 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + +I K+ + P +
Sbjct: 122 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKYKVTPAQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 182 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A 
Sbjct: 241 QVKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                       N+    +    E+ ++
Sbjct: 301 ------------------------------------------ASNTSGAGESTNNEQNEQ 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIA 408
            S   +N    T I   +   +WV+    +++  G  +   ++D  D     A     + 
Sbjct: 319 DSSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVG 378

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H 
Sbjct: 379 HAWTVAAWGDERPGRATAQAIAVATATSA-AIVSLPITDTLRAQLAQFLKSEHSRTIVHG 437

Query: 469 IKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            K    +L    + +     D  L  Y+      +  +   A+ +L     E  +  + +
Sbjct: 438 YKELLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGT 497

Query: 528 IPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +  D    +    E  + +  +I  L + L P +   +   +   ++ P+  V+  ME T
Sbjct: 498 LDFDDDQVEEDPNELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHT 557

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +      +TK
Sbjct: 558 GAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMGLKPTKRTK 617

Query: 647 TGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N   +R+H
Sbjct: 618 SGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIH 676

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILA 759
           T +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A
Sbjct: 677 TTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMA 736

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S + LA 
Sbjct: 737 DLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQ 796

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S     
Sbjct: 797 QLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVA 856

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+   E   
Sbjct: 857 REAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQ 916

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++ ++ME A    ++L VPL V+  + ++W
Sbjct: 917 VTELVRNAMEHA----VDLAVPLDVSCGIGSDW 945


>gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
 gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
          Length = 908

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/979 (33%), Positives = 503/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ ++    KE    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFII----KEKNPKHL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A +    
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI---- 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|332687082|ref|YP_004456856.1| DNA polymerase I [Melissococcus plutonius ATCC 35311]
 gi|332371091|dbj|BAK22047.1| DNA polymerase I [Melissococcus plutonius ATCC 35311]
          Length = 887

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/990 (31%), Positives = 484/990 (48%), Gaps = 119/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++        
Sbjct: 1   MTKK-KLLLVDGNSVAFRAFFALHNSLERFKNQNGLHTNAIYAFNTMFENVMAKEE---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFRN +Y DYKA R K P+    Q+P ++   +  G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRNAMYEDYKAGRAKTPDEFREQMPYIKELLEGLGVKHYELANYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T      KE + V I+S D+DL QL + T  +  TVK     E    E++ +K+ 
Sbjct: 116 DDIIGTLATKVPKEEYDVVILSGDRDLTQLATDTIKVDITVKGVSDIESCTPEYMFEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  +G KTA  LL+EYG++E +  +   +K  K    
Sbjct: 176 GLCPQQIIDIKGLAGDASDNIPGVTKVGEKTAIKLLKEYGSVEGVYNHIDEMKTSKL--- 232

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
                E     ++                                       +++   T 
Sbjct: 233 ----KENLIRDKE------------------------------------KAFLSKQLATI 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D DA    PV ++I+     G  ++  +     +   QF  L        +E+  +++ L
Sbjct: 253 DTDA----PVNVEIDQLVYHGKNLDKLVPFYREMNFKQF--LGKLNLDTKTEEAEEEVAL 306

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
            ++               +V+T   + +       G  +  +     +   S  I IA  
Sbjct: 307 TKIAFQ------------VVDTFKPEMF------QGDMALYVEMLEDNYHLSPIIGIAW- 347

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                                  +   T    L +E       +  +E   K  ++ K  
Sbjct: 348 -------------------GNKQTIYVTENLALFEE--QAFIDWLFDETCQKQVYDAKRT 386

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
              L+RY   M+G   DI+L +Y+L++  ++ DI  +A+++    +        +  K  
Sbjct: 387 YTALNRYVGKMQGISFDILLAAYLLNTNDTNTDIECVARQYGYTDIQSDEAVYDRGAKKK 446

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P +K        H       I  L   L   L+ +   +++  ++ P+  +++ MEITG
Sbjct: 447 VPQEK---EIFYNHLAHKIKAIEYLSEKLAADLVEKNQANLFSEMELPLSRILADMEITG 503

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I +D   L+++  E S  L ++E+ IY  +GE+FN++SPKQLG ILF K+  P   KTKT
Sbjct: 504 IHVDAHRLEEMQGEFSDQLKAIEQKIYTEAGEEFNINSPKQLGVILFEKMGLPVIKKTKT 563

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL +RQ++KI+STY + L   I     +VHT Y    
Sbjct: 564 GY--STAVDVLEQLKERAPIVEDILIYRQIAKIQSTYVEGLLKVIQPD-HKVHTRYLQTL 620

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ + G+KIR+AFI       + S+DYSQIELR+LAHI+    
Sbjct: 621 TQTGRLSSVDPNLQNIPIRLEEGRKIRQAFIPREKDWLIYSSDYSQIELRVLAHISNDEH 680

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +F ++  E+V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 681 LKAAFLEQQDIHASTAMRVFNLSSPEEVTPNMRRQAKAVNFGIVYGISDYGLSKNLEISR 740

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            +A  YI  YF+++P +  Y+E+     +  GYVET++ RR +  +INS   ++R+  ER
Sbjct: 741 QQAQQYIDTYFNKYPSVKTYMEEIVREAKDKGYVETLYHRRRYLKDINSRNYNLRSFAER 800

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + + L++  +   MLLQ+HDELVFEVP  E+    +I+ 
Sbjct: 801 TAINTPIQGSAADILKIAMIQMDRRLKEENIQATMLLQVHDELVFEVPAAELEKLDKIVK 860

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             MEK     ++L VPL  +      W E 
Sbjct: 861 EVMEKC----VSLTVPLIADSNWGKTWYEA 886


>gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
 gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
          Length = 893

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/982 (31%), Positives = 514/982 (52%), Gaps = 113/982 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+  + L+DGSS I+RAF+A P L+   DG+  N + GF  M ++ ++  + +    +
Sbjct: 15  MSKK--VMLIDGSSLIFRAFFALPNLTNA-DGVMTNGVYGFLTMYFRAVEEYKPD----Y 67

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + DYKANR K P  L  Q  +++    +  +  ++I G+EADDI
Sbjct: 68  ILVAFDKKTKTFRHKEFEDYKANRDKAPNELNYQFGILKDILDSLNVKYLDIDGYEADDI 127

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           + T++ IA++EG    II+ DKD  QLV+    ++ T K     E+I ++ +   +G+ P
Sbjct: 128 VGTFSTIAKEEGLETVIITGDKDYFQLVNDKVVVFLTRKGISQMEEITVKSIEDDYGLSP 187

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++ L GD  DNIPG+ GIG KTA                   IK+    E + E 
Sbjct: 188 KQLIDVKGLMGDKSDNIPGVDGIGEKTAIKF----------------IKKYGSMEGLYEN 231

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  +                           G +    L+  +    +++   T   +A
Sbjct: 232 LDDIK---------------------------GKKTKENLENSKQIAFLSKKIGTIVTNA 264

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               PV + I+               +  +K     SL ++ SK N  +     F+E+ +
Sbjct: 265 ----PVGMKIS---------------ELKVKEPDLDSLREKFSKYNFNK-----FMEKFE 300

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S+   +   ++   +  D    +  +E  G   FK I +  +  HS    IAI T   
Sbjct: 301 DTSEERKDEIEFS--YSFSDDFSIIDDIEKDGVFYFKSIFEEDNYIHSNAYKIAIKTSSS 358

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K                             ++ +   KK+FE ++  K+  +IK D ++ 
Sbjct: 359 KTYIYNP----------------------DEKFVEKFKKYFEADNIKKVSFDIKEDIVLF 396

Query: 477 HRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
            + GI++   ++D MLM Y++D  RSS+D+ + +Q +L Y     +++L   KS      
Sbjct: 397 DKLGINISLPYDDTMLMHYLIDPSRSSYDLKTFSQAFLKYEVENEEDLLGKGKSKKSYKD 456

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +    + ++     N I     +L  KL    +  +Y+  +  +  V++ MEITG   D+
Sbjct: 457 LDSDNLGKYLASIVNAIEDSLDILTQKLEELSMYDLYKDCEIKLSKVLADMEITGFICDK 516

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L+++  E+S  L  LE+ IY+L+G +FN++SPKQL  ILF  LK P   KTKTG + T
Sbjct: 517 NELEKIKDEVSLELGDLEKIIYELAGSEFNINSPKQLSKILFEDLKLPIIKKTKTG-YST 575

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            AQ LE++    +PII+ I  +R++ K+KSTY +SL   I++   R+ + +    T TGR
Sbjct: 576 NAQVLEKLR-KKHPIIEKIERYREMYKLKSTYLESLEECIDEDG-RIRSTFKQNVTATGR 633

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQN+PI+T+ G+KIR+AF +   K LI ADYSQIELR+LAH+A    + + F 
Sbjct: 634 LSSTEPNLQNLPIRTEEGRKIRKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFS 693

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +DIH   A+E+F   I++V+   R  AK +NF IIYGIS + L+  L IPR  A +YI
Sbjct: 694 KDIDIHTKTASEVFSTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRKRAKEYI 753

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + Y   +P I +Y++      +++GYV TIF RR +  EINS   ++R+  ER A+N PI
Sbjct: 754 ENYLDTYPEIKKYMKDIVKKAKEDGYVNTIFNRRRYVPEINSKNFNVRSFGERVALNTPI 813

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI+ +++L+  K+  K++LQIHDE++ E  ++++  A +I+  SM+ A 
Sbjct: 814 QGTAADIIKFAMINSYQNLQKAKIDAKIVLQIHDEIIIEASKKDLEKAKEILKSSMQDA- 872

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              ++L+VPL V+I    +  E
Sbjct: 873 ---VDLKVPLLVDIDSGESMYE 891


>gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4]
 gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4]
          Length = 914

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/980 (28%), Positives = 465/980 (47%), Gaps = 101/980 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  +RAFYA P  + + H G   NA+ GF +ML  LL++ +     +H 
Sbjct: 23  DRPTLMLLDGHSLAFRAFYALPAENFKTHSGQVTNAVYGFTSMLINLLRDEQ----PTHV 78

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A  FD    TFR E +P+YKANR K P+    Q+ + +    A GIP +  +GFEADDII
Sbjct: 79  AAAFDVSRQTFRAEKFPEYKANRSKAPDEFKGQVEITKDVLGALGIPVMAEEGFEADDII 138

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT T  AE  G+ V +++ D+D +QLV+    +    K      +     V +K+G+ P 
Sbjct: 139 ATLTTQAEALGYRVLVVTGDRDSLQLVTDGVTVLYPKKGVSDLTRFTPAAVEEKYGLTPA 198

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPG+G KTA   ++EYG+L  ++ N  +++  K  + + E  
Sbjct: 199 QYPDFAALRGDPSDNLPGIPGVGEKTATKWIKEYGDLVGLVDNVDKVRG-KVGDALRENL 257

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
               L+R+     T++   +PL                                      
Sbjct: 258 PNVLLNRE----LTEMVRDVPL-------------------------------------- 275

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P  L +   + + I    +      ++   F++L+   ++       +   LE    
Sbjct: 276 PYTPDQLMLAQWDREKIHALFDDLEFKVLRDRLFATLAPVEAEAEEGFEVRGSALE---- 331

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                              +  W+    + G  S   +  T   +     AIA++  D +
Sbjct: 332 ----------------PGAVADWLSLHASTGERSGVSVVGTRTPYGGDVTAIAVAAADGE 375

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                       T E    L  +  +    K  H  K+    L 
Sbjct: 376 GAYIATASA-------------------TPEDEKALGDWLADAEQPKALHEAKWAMHALR 416

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKIS 534
             G  + G   D  L +Y++  G+ + ++  ++ ++L      +E  + + S +      
Sbjct: 417 GRGWVLGGLTSDTALAAYLVRPGQRTFNLDDLSLRYLRRELRVEETGQEQLSLLDDADQV 476

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D++  E  I ++  +L L   L  +L   +   +   ++ P+++V++ +E +GI +D   
Sbjct: 477 DAEAAETEILSARAVLDLAAALDTELDNIESTALLSEMELPLLEVLAVIEASGIAVDGTH 536

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  + +  +  +    E  Y + G++ NL SPKQL  +LF +L+ P   KTKTG      
Sbjct: 537 LHDLQSRFAAEVSEAAEAAYGVIGKQINLGSPKQLQVVLFDELEMPKTKKTKTGYTTDAE 596

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                     +P ++++L  R  +++K T  D L   + +   R+HT ++     TGRL+
Sbjct: 597 ALQNLFEKTSHPFLEHLLAHRDATRLKVT-VDGLLKTVAEDG-RIHTTFNQTVAATGRLS 654

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP++TD G++IR  F+       L++ADYSQIE+RI+AH++    L + F  
Sbjct: 655 STEPNLQNIPVRTDAGRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDAGLIEAFNT 714

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  V A  FGV IE+V+P++RR  K +++ + YG+S F LA QL+I   EA   ++
Sbjct: 715 GEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEAKSQME 774

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +Y+ +     R++GY  T++GRR +  ++ S     R + ERAA+NAPIQ
Sbjct: 775 AYFARFGGVRDYLHEVVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPIQ 834

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI+V +SL +  L ++MLLQ+HDELV EV + E     Q++   M  A  
Sbjct: 835 GTAADIIKVAMINVQRSLREAGLKSRMLLQVHDELVLEVVDSEREQVEQLVRDKMSSA-- 892

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             I L VPL V++    +W 
Sbjct: 893 --IELSVPLDVSVGTGRSWD 910


>gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1]
 gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1]
          Length = 908

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/979 (33%), Positives = 503/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP+YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPNYKATRDSPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYIKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAASLLREFKTLDGIYSNLELI-NKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 ALLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q +  NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEATTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYHSITTKIELDDLIESLKKAKYTSIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      FE+ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFES-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G S +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ L   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFVR  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A      
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETA----YT 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 912

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/986 (28%), Positives = 466/986 (47%), Gaps = 101/986 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    L ++DG S  +RAFYA P  +   D G   NA+ GF +ML  +++  +     SH
Sbjct: 16  KATPKLLVLDGHSMAFRAFYALPPETFVTDTGQHTNAVHGFTSMLLTMIRQQK----PSH 71

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+  Y +YKA R K PE    Q+ L+    +A  +P I I GFEADDI
Sbjct: 72  VAVAFDLDTPTFRSVEYTEYKAGRSKTPEEFYGQIDLIIKVMEAMNVPTISIDGFEADDI 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP 176
           IAT    +E  G+   ++S D+D  QL++  T +    K       +D   +  K+ + P
Sbjct: 132 IATVASQSEAAGWQTLVVSGDRDAFQLITDNTFVLYPKKGISDIPPMDAAAIEAKYFVRP 191

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++   L AL G++ DN+PG+PG+G KTAA  + +Y  L  IL N   I   K  +++ E+
Sbjct: 192 DQYSDLAALVGETADNLPGVPGVGPKTAAKWINQYDGLAGILENIYAI-GGKVGDSLREH 250

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            ++ + +R+L  L  D+ + + LE + L+  +                  ++   +D   
Sbjct: 251 VDSVKRNRRLNHLLRDLDLPVTLEQMELQHPDRE----------------KIEELFDE-- 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                    +  T++   F    +  ++ +SE            
Sbjct: 293 ------------------------LQFNTLRKRLFDLFGEDEAEASSE------------ 316

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                  +   +  + +  +I  W++     G+A+  +         ++P+ + +     
Sbjct: 317 -----GHDAPEHGVLGSAAEISAWLEAA---GTATIGLALSGQTLPLAEPVGMDV----H 364

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               S +    FI L+            L +     L  + +     K  H++K     L
Sbjct: 365 GIGLSSEESAAFIPLTG-----------LDEAAEQVLASWLK-GSAPKAVHDLKSALKAL 412

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G+ + G  +D  + +Y++   R ++D+A ++   L              + +    D
Sbjct: 413 SGRGLDLDGVVDDTSISAYLIQPERRNYDLADLSLYHLETPMTVSASKDAGQLDLGLEGD 472

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
              QE A+  +    +L     P L+      +   L+ P+  V+S ME+ G+ + ++ L
Sbjct: 473 DGAQE-AVLRAFATQKLSSFFAPILLERNAEQLLTGLELPLARVLSGMELAGVAVSKETL 531

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             + A+  K + + +   Y + G + NL SPKQL  +LF +L  P   K KTG       
Sbjct: 532 DTLMADFGKTIETAQTEAYAIIGHEVNLGSPKQLQTVLFDELGMPKTKKIKTGFSTDAEA 591

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             +      +P +  +  +R  +K++ T  + L   I   T RVHT Y+     TGRL+S
Sbjct: 592 LADLTTKHPHPFLLQLQAYRDATKLRQT-VEGLIKSIGSDT-RVHTTYAQNVAATGRLSS 649

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-----PPTKKLISADYSQIELRILAHIAKITPLYQV 770
             PNLQNIPI+++ G++IR AF+         + L++ADYSQIE+RI+AH++    L Q 
Sbjct: 650 NNPNLQNIPIRSEEGRRIRGAFVVGQKSTKSYETLLTADYSQIEMRIMAHLSGDEALIQA 709

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F++  D+HR V + IF V  ++V+  MR   K +++ ++YG+S F L+ QL I   EA  
Sbjct: 710 FKDGEDLHRFVGSHIFNVEPQEVTSAMRSKVKAMSYGLVYGLSSFGLSKQLNISVDEART 769

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            +K YF RF  + +Y+       R +G+ ETI  RR +  E+ S    +R ++ERAA+NA
Sbjct: 770 LMKDYFDRFGAVRDYLRGVVEQARLDGFTETIESRRRYLPELTSDNRQLREMSERAALNA 829

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI +RAM+ V   + +  L ++MLLQ+HDELVFEV E E+     +++  M  
Sbjct: 830 PIQGSAADIIKRAMLGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQALVIAQMAV 889

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A     NL VPL V + +  +W +  
Sbjct: 890 AA----NLTVPLDVQVGIGKSWFDAG 911


>gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S]
 gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S]
          Length = 912

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/982 (29%), Positives = 466/982 (47%), Gaps = 103/982 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L L+DG S  YRAF+A P  + +   G   NA+ GF +ML  LL++ +     +H
Sbjct: 20  SDRPTLMLLDGHSLAYRAFFALPAENFKTQSGQATNAVYGFTSMLINLLRDEQ----PTH 75

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR E +P+YKANR K P+    Q+ + +    A GIP + I+GFEADD+
Sbjct: 76  VAAAFDVSRQTFRAEAFPEYKANRSKTPDEFKGQVEITKDVLAAMGIPVMAIEGFEADDV 135

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           IAT T  A   G+ V +++ D+D +QLV+    +    K      +     V +K+G+ P
Sbjct: 136 IATLTTQATALGYRVLVVTGDRDSLQLVTDDVTVLYPRKGVSDLARFTPAAVEEKYGLTP 195

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++     AL GD  DN+PGIPG+G KTAA  ++EYG+LEN++ +  +++  K  + +   
Sbjct: 196 QQYPDYAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLENLVNDVDKVRG-KVGDALRAN 254

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +  L+R L  +  DV +            +   L  + +         R+   +D   
Sbjct: 255 VNSVLLNRHLTEMVRDVAVPYT--------PDQLALAPWDRE--------RIHALFDD-- 296

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                            +F  L D+     S   P+      + 
Sbjct: 297 --------------------------------LEFKVLRDRLFATLSSTEPEAEEGFEVS 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +            +   ++  W+ +  + G      +  T   +     A+AI+  D 
Sbjct: 325 GRA------------LAPGEVAAWIAEHASTGERHGLSVVGTTTPYGGDVTAVAIAAPDG 372

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +            D +      +                        K  H  K     L
Sbjct: 373 EGAYISTTTATPEDEAALADWLADAG-------------------RPKALHEAKRAMHAL 413

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI---DK 532
              G  + G   D  L +Y++  G+ S ++  ++ ++L    + + +S +  + +   + 
Sbjct: 414 RGRGWMLAGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELR-VEESGQQQLSLLDDED 472

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            +D++  E  I  S  +  L   L  +L   +   +   ++ P+++V++ +E TGI +D 
Sbjct: 473 AADAEAAEGEILRSRAVRDLAAALDTELADIEATGLLADMELPLLEVLANLESTGIAVDT 532

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L  + +  +  +    E  Y + G++ NL SPKQL  +LF +L  P   KTKTG    
Sbjct: 533 THLHDLQSAFAARVAEAAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTTD 592

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                       +P ++++LE R  +++K T  D L   + +   R+HT ++     TGR
Sbjct: 593 ADALQSLFEKTQHPFLEHLLEHRDATRLKVT-VDGLLKTVAEDG-RIHTTFNQTVAATGR 650

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIP++TD G++IR  F+       L++ADYSQIE+RI+AH++    L + F
Sbjct: 651 LSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAF 710

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               D+H  V +  FGV IE+V+P++RR  K +++ + YG+S F LA QL+I   EA   
Sbjct: 711 ITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEARQQ 770

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF RF G+ +Y+ +     R+ GY ET+FGRR +  ++NS     R + ERAA+NAP
Sbjct: 771 MDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRYLPDLNSDNRQRREVAERAALNAP 830

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI V ++L +  LA++MLLQ+HDELV EV   E     Q++   M  A
Sbjct: 831 IQGTAADIIKVAMIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVEQLVREKMAAA 890

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
               I+L VPL+V++    +W 
Sbjct: 891 ----IDLSVPLEVSVGTGRSWD 908


>gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115]
          Length = 880

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/991 (32%), Positives = 494/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  IET       +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQIETLSKFYDEMGFKQLK------AQLGTSQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + + +  
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVGL-- 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L ++   ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTENNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
 gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
          Length = 879

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/980 (28%), Positives = 477/980 (48%), Gaps = 115/980 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  L L+DG S  +RAFYA P+ +     G   NA+ GF +ML  ++     ++    
Sbjct: 3   TNQPRLLLIDGHSMAFRAFYALPVDNFSTSGGQHTNAVYGFLSMLSNIVAEETPDA---- 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR E++PDYKA R   PE    Q+ L+R   +  GI  +  + FEADDI
Sbjct: 59  IAVAFDVGRKTFRTEMFPDYKAQREAAPEEFKGQVDLIREVLEVLGITTLSRENFEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           +AT    A  + +   I++ D+D +QLV+ +T +   +K      +     V +K+G+ P
Sbjct: 119 LATLATEA--QDYETLIVTGDRDYLQLVNESTTVLYPMKGVSTLHRFTPSAVEEKYGLTP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIP +G KTA   + +YG+L +++ +A  IK      N  E 
Sbjct: 177 AQYPDFAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEIKG-VVGNNFRER 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +++RKL  + TD+ + +    L  ++     +                        
Sbjct: 236 IEQVQMNRKLTQMITDMDLEVGPNDLAFKEAKVADV------------------------ 271

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                             A   +++  T+++    +++ +  ++  +EQ  Q   LE   
Sbjct: 272 -----------------AAKFDDLEFGTSLRDRVLAAIPNDGAEA-AEQAEQVQELE--- 310

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         +++ + + QW   L      +  +  +  +       AIA      
Sbjct: 311 -------------TVIDDEPLSQW---LPGREHVAVYVQGEG-NPGQGDASAIAF----- 348

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                       +D   H  Q   G   L+ E    L ++  ++   K  H  K    +L
Sbjct: 349 ------------VDQERHGLQVELGD--LSAEDDKALAQWLASDA-PKYFHEAKAAFHML 393

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              GI + G   D  L +Y+L  G+ ++ +A + Q+ L     + L +    + +   S 
Sbjct: 394 AGRGIELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQ----KTLGAATEQLSLLDDSS 449

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  ++ +  IL+L   L  +L       +Y  L+ P++ ++++ME TGI +D D+L
Sbjct: 450 ------LVDQAAAILELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDIL 503

Query: 596 KQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           +       + +   E    +L+G+ K NL+SPKQL  +LF   + P   KTKTG      
Sbjct: 504 ETQKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAK 563

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +  +      +P + ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+
Sbjct: 564 EIEQLAAKNPHPFLDHLLAHREYQKMKTTL-EGLIKTVQPDG-RIHTTFNQTVASTGRLS 621

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP++T+ G++IR AFI      +L++ADYSQIE+R++AH++    L + ++ 
Sbjct: 622 STEPNLQNIPVRTEAGRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKE 681

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++
Sbjct: 682 GEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIME 741

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +Y+++     R++GY  T+FGRR +  E+NS     R   ERAA+NAPIQ
Sbjct: 742 SYFERFGGVKKYLDEVVVQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQ 801

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI V ++L+   + +++LLQ+HDELV EV   E     +I+   M+ A  
Sbjct: 802 GTAADIIKVAMIRVDRALQ--GMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSA-- 857

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             I L VPL+V+     +W 
Sbjct: 858 --IELNVPLEVSAGAGKDWD 875


>gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342]
          Length = 882

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/990 (31%), Positives = 483/990 (48%), Gaps = 124/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L LVDG+S  +RAF+A        +  +GL  NAI  F NM   ++Q      +
Sbjct: 1   MTKK-KLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKE----M 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ 
Sbjct: 116 DDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  L                +KQ    E 
Sbjct: 176 GLTPKQIIDMKGLAGDTSDNIPGVTKIGEKTAIKL----------------LKQYGSVEG 219

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + E  +  + S+                  + E+    +  +FL          R+AT  
Sbjct: 220 VYENIDEMKKSK------------------MKENLINDKEQAFLSK--------RLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV +++     +G  +E  +     +   QF       +K++  + P     
Sbjct: 253 ----EVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQF------LAKLDITEEP----- 297

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                     + +  +  + +    + +   +      +  +     +   S  +   ++
Sbjct: 298 --------VEMEDILFEVVEDQLTNEMFTDDM------ALYVEMMEDNYHTSPIVG--LA 341

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             + K   +     +F                           +  +E   K  ++ K  
Sbjct: 342 WGNNKKIYTTNNLAVFES--------------------QPFIDWLMDETRKKNVYDAKRT 381

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        K  K  
Sbjct: 382 YVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKG 441

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P D+        H       I  L   L  +L  +    ++ +++ P+  ++  MEITG
Sbjct: 442 LPEDE---EVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILGDMEITG 498

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 499 IRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 558

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+ +IL +RQ++KI+STY + L   I    + +HT Y    
Sbjct: 559 GY--STAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNK-IHTRYVQTL 615

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+    
Sbjct: 616 TQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEH 675

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+ +L I R
Sbjct: 676 LKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSPKLGITR 735

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++R+  ER
Sbjct: 736 KQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAER 795

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+   +Q++ 
Sbjct: 796 TAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQLNQLVK 855

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME A    ++L VPL  +      W E 
Sbjct: 856 EVMEHA----VSLHVPLITDSSWGKTWYEA 881


>gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
 gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
          Length = 908

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/979 (32%), Positives = 503/979 (51%), Gaps = 79/979 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVMKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP YKA R   P+ L+PQ+  ++       IP  E++G+EADD++
Sbjct: 56  IITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   A K  +   IIS DKDL+Q +S    +         ++D E+V KK+G+   ++
Sbjct: 116 ASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK RE +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNL-EIINKKHRELLIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS +LV L  ++ I   +E+  L++     +IS  +      LI     TY  D    
Sbjct: 235 AFLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALIK----TYKKDILKQ 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E    D                           SL  Q    NS           L  ++
Sbjct: 289 EKENADQK-------------------------SLFKQEPTTNS-----------LDDIN 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I    ++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 313 TIDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      F++ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------EAKGKIYIEKNYIIQKFNNLFKS-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G + +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  +KL  +   ++ P   V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L ++E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I+N++++RQ++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+++F +  ++++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF 
Sbjct: 714 HTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFD 773

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSAA
Sbjct: 774 SYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAA 833

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V    +  K+ +K+LLQ+HDE++ E P EE     +I+   ME A +    
Sbjct: 834 DIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI---- 889

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L +PL+ NI+   +W E +
Sbjct: 890 LNLPLRANIETGKSWGEIH 908


>gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010]
 gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010]
          Length = 944

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/985 (27%), Positives = 463/985 (47%), Gaps = 70/985 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    L +VDG S  +RAF+A P  +     G   NA+ GF  ML ++L + + +    H
Sbjct: 11  KTRGTLLVVDGHSLAFRAFFALPAENFSTQAGQATNAVWGFATMLSQVLDSEKPD----H 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  +E QG+E DDI
Sbjct: 67  LAVAFDMKGGTFRNEMLPQYKGTREAAPEDLLTQLPLIQKMLTALGVTYVEKQGYEGDDI 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT   + E+ G+   ++S D+D  QL+     +          + +  + V  K+ + P
Sbjct: 127 IATLAAMGERSGYDTLVLSGDRDAFQLIDERVTVLYPGHHFKDLKHMTPQAVEDKYHVGP 186

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +   L AL G++ DNIPG+PG+G   AA  + +YG LE I+ +A  I  KK  E++ E 
Sbjct: 187 AQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEGIIEHADEIGGKK-GESLREN 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +L+RK+  LR DV + I +E L   + +   L     +LEF               
Sbjct: 246 IEQVKLNRKVNALRRDVDLGIGIEDLTFGEVDADALSELFTSLEF-------------GP 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V+   N  +  G A +                  D+ +  +  + P+ +      
Sbjct: 293 RTRSKVLKSFNAGKQAGDAAD--------------KHADDENTSSDDLRIPEAV------ 332

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETI-GSASFKIITDTMDAFHSKPIAIAISTLD 415
                         I +   +  W+       GS +     +  +  H   +  +   L 
Sbjct: 333 -------------TIADEAALVAWIDSARDGLGSPADNSDDEPRNRAHCADVMASTCALY 379

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +  +        + +     + +  +  +   +   L++F +      + H  K    +
Sbjct: 380 AEGSSKPGNPGCSVLMLEVGGKAAVLEAGVIAGVRPALQRFLDGHADRIVVHGYKEQSHI 439

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L   G+ +   + D  L  Y++     +  +   A  +L           +  + +    
Sbjct: 440 LASLGLDLAEPWFDTKLAGYLVQPDYHADSLEQAASHFLQLQLDNADDVAQGQLDLSGDV 499

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D   Q   + +  ++  L  +L  K+   +   + + ++ P+  V+  ME  G  +D   
Sbjct: 500 DPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQSIELPVSHVLFGMEQVGASVDFMR 559

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++    + +    +E  +  +G + NL SPKQL  +LF  +      KTK+G + T A
Sbjct: 560 LTEMRDRFAVDARDAQETAWQFAGSRVNLQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNA 619

Query: 655 QDLEQIN------CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
             L+ +          N  +  +L  R+ +K+K     SL + +N    R+HT +     
Sbjct: 620 SALQDLAVRSVGNERANGFLTALLRHRETNKLK-QIVQSLIDAVNPDDGRIHTTFEQTVA 678

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A ++    L
Sbjct: 679 ATGRLSSVDPNLQNIPNRNAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDAL 738

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F +  D H+ VA+ ++G+ ++ ++P  R H K +++ + YG+S + LA QL+I   E
Sbjct: 739 IEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTYGLAQQLKISPGE 798

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A     +YF  F  +HEY+E      R+ GY ET+FGRR ++  + SP  +IR+  ER A
Sbjct: 799 ADRLKSQYFATFGKVHEYLESLVAGAREKGYTETMFGRRRYFPGLQSPNRNIRDAAERGA 858

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI    +L   K+ ++++LQIHDELV E+   E+   + ++  +
Sbjct: 859 LNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAPGEVEQVTGLVRDA 918

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           ME A    ++L VPL V+  + ++W
Sbjct: 919 MEHA----VDLAVPLDVSTGIGSDW 939


>gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W]
 gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II]
          Length = 881

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/989 (31%), Positives = 490/989 (49%), Gaps = 123/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A           DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDA- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 60  ---ALVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMDKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL +YG++                EN+
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSM----------------ENL 220

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               +  + S+              L+  ++ D +             +  +++   T D
Sbjct: 221 YANVDDMKKSK--------------LKENLINDKD-------------SAFLSKQLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    P+ +D+                D T        L D  +K+N     +K+   
Sbjct: 254 RDA----PLTVDLA---------------DVTYAGPDLDKLRDFYTKMNMNSLLKKIGGS 294

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             + +     +      +++    Q  +   +     +F+I     +   ++ I   I T
Sbjct: 295 VAKPVQAVHFS------VLDE---QSILALTKLTEPLTFEIEMLEDNYHVAEQIGFFIGT 345

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            ++   +                        +T   L  +K++ E+        + K + 
Sbjct: 346 KEETYVS----------------------TDITLLTLPAVKRWLEDAKRDLTVFDGKRNI 383

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           +  +R G+ +     D++L SY+++   +S+D+  IA+      L        K  K  +
Sbjct: 384 VAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQV 443

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D     Q        SN +  L   L   L  +    ++  ++ P+  V+++MEI GI
Sbjct: 444 PEDDKLFGQF----ARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG
Sbjct: 500 TLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+       +PI+++IL++R  +K+ STY   L         ++HT Y    T
Sbjct: 560 Y--STSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPD-HKIHTRYLQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PN+QNIP + + G+ IR+AF+      ++ S+DYSQIELR+L+HI+    +
Sbjct: 617 QTGRLSSVDPNMQNIPARDE-GKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENM 675

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R 
Sbjct: 676 QEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRK 735

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER 
Sbjct: 736 QAKAFIDGYFDQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERT 795

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++  
Sbjct: 796 AMNTPIQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPK 855

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    ++L VPLKV       W + 
Sbjct: 856 VMDSA----VHLDVPLKVESHYGPTWFDA 880


>gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
 gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
          Length = 866

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/975 (32%), Positives = 503/975 (51%), Gaps = 119/975 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+ ++ + +    +    
Sbjct: 2   KRLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKMREDIKPD----YIVCT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII + 
Sbjct: 57  FDKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + +
Sbjct: 117 AKVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTA  L++EYG++                E +LE  +  
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSV----------------EAVLENIDNI 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      +G +L   L       + ++   T   +     
Sbjct: 221 ---------------------------SGKKLKENLTEYSEQAIFSKKLATIMTNV---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+  D++  ++K    + ++         Q  S+ D+ S                     
Sbjct: 250 PIDFDLDEIKSKDDYNKDQLK--ALFTKLQMKSILDKLSNG------------------- 288

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                +   KI N ++ ++  +  + I                 + + I  + L+++  +
Sbjct: 289 EEEEPEIEVKITNIENSKELEELFKNIN----------------EEVYINFTYLNKEKYS 332

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + +++ IFI+        +  +    +E +   K+FFENE  LK G++IK     L + G
Sbjct: 333 TIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEDILKNGYSIKNALTALKKLG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I   G   D  L +Y++DS +  + + S+   +LS                 K  + +  
Sbjct: 393 IDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-----------------KFPNVKEG 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S ME  G ++++++L ++S
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSSMESIGFKVNKNILDELS 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P   KTKTG + T A+ LE+
Sbjct: 496 IKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII+ I  +RQLSKI STY + L + I+       TF +   T TGRL+S EPN
Sbjct: 555 LK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGSIHSTF-NQTVTTTGRLSSTEPN 612

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ FI       LISADYSQIELR+LAHI+    +   F +  DIH
Sbjct: 613 LQNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIH 672

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L I R EA +Y+  YF R
Sbjct: 673 TKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFER 732

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EYI K  +  +  GYV T+  RR +  E N+    ++ + ER A+NAPIQG+AAD
Sbjct: 733 YPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAAD 792

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V+  L++  L +K++LQ+HDEL+  V + E+    +++   ME      I L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKLLKEEMEN----TIKL 848

Query: 959 RVPLKVNIKVSNNWQ 973
            VPL V++ V  +W 
Sbjct: 849 SVPLDVDVNVGEDWY 863


>gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302]
          Length = 882

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/990 (31%), Positives = 481/990 (48%), Gaps = 124/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L LVDG+S  +RAF+A        +  +GL  NAI  F NM   ++Q      +
Sbjct: 1   MTKK-KLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKE----M 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ 
Sbjct: 116 DDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  L                +KQ    E 
Sbjct: 176 GLTPKQIIDMKGLAGDTSDNIPGVTKIGEKTAIKL----------------LKQYGSVEG 219

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + E  +  + S+                  + E+    +  +FL          R+AT  
Sbjct: 220 VYENIDEMKKSK------------------MKENLINDKEQAFLSK--------RLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV +++     +G  +E  +     +   QF       +K++  + P     
Sbjct: 253 ----EVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQF------LAKLDITEEP----- 297

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                     + +  +  + +    + +   +      +  +     +   S  +   ++
Sbjct: 298 --------VEMEDILFEVVEDQLTNEMFTDDM------ALYVEMMEDNYHTSPIVG--LA 341

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             + K   +     +F                           +  +E   K  ++ K  
Sbjct: 342 WGNNKKIYTTNNLAVFES--------------------QPFIDWLMDETRKKNVYDAKRT 381

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        K  K  
Sbjct: 382 YVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKG 441

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P D+        H       I  L   L  +L  +    ++ +++ P+  ++  MEITG
Sbjct: 442 LPEDE---EVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILGDMEITG 498

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 499 IRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 558

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+ +IL +RQ++KI+STY + L   I    + +HT Y    
Sbjct: 559 GY--STAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNK-IHTRYVQTL 615

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+    
Sbjct: 616 TQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEH 675

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F    DIH   A  +FGV   E V+  MRR AK +NF I+YGIS + L+  L I R
Sbjct: 676 LKEAFVEGQDIHASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITR 735

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++R+  ER
Sbjct: 736 KQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAER 795

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+   +Q++ 
Sbjct: 796 TAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQLNQLVK 855

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME A    ++L VPL  +      W E 
Sbjct: 856 EVMEHA----VSLHVPLITDSSWGKTWYEA 881


>gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
 gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
          Length = 866

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/976 (32%), Positives = 501/976 (51%), Gaps = 119/976 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+ ++ + +    +    
Sbjct: 2   KRLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKMREDIKPD----YIVCT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII + 
Sbjct: 57  FDKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + +
Sbjct: 117 AKVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTA  L++EYG++                E +LE  +  
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSV----------------EAVLENIDNI 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      +G +L   L       + ++   T   +     
Sbjct: 221 ---------------------------SGKKLKENLTEYSEQAIFSKKLATIMTNV---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+  D++  ++K    + ++         Q  S+ D+ S                     
Sbjct: 250 PIDFDLDEIKSKDDYNKDQLK--ALFTKLQMKSILDKLSNG------------------- 288

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                +   KI N +  ++     + I                 + + I  + L+++  +
Sbjct: 289 EEEEPEIEVKITNIESNKELEDLFKNIN----------------EEVYINFTYLNKEKYS 332

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + +++ IFI+        +  +    +E +   K+FFENE  LK G++IK     L + G
Sbjct: 333 TIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEAILKNGYSIKNALTALKKLG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I   G   D  L +Y++DS +  + + S+   +LS                 K  + +  
Sbjct: 393 IDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-----------------KFPNVKEG 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S ME  G ++++D+L ++S
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSSMESIGFKVNKDILDELS 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P   KTKTG + T A+ LE+
Sbjct: 496 IKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII+ I  +RQLSKI STY + L   I+       TF +   T TGRL+S EPN
Sbjct: 555 LK-DKHPIIEKITYFRQLSKIYSTYVEGLKAVIDTDGSIHSTF-NQTVTTTGRLSSTEPN 612

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ FI       LISADYSQIELR+LAHI+    +   F +  DIH
Sbjct: 613 LQNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIH 672

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L I R EA +Y+  YF R
Sbjct: 673 TKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFER 732

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EYI K  +  +  GYV T+  RR +  E N+    ++ + ER A+NAPIQG+AAD
Sbjct: 733 YPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAAD 792

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V+  L++  L +K++LQ+HDEL+  V + E+    +++   ME      I L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKLLKEEMEN----TIKL 848

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V++ V  +W +
Sbjct: 849 SVPLDVDVNVGEDWYK 864


>gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
 gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
          Length = 955

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/993 (27%), Positives = 474/993 (47%), Gaps = 77/993 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 11  NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 67  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + ++ K+ + P +
Sbjct: 127 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIVDKYKVTPAQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 187 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 245

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A 
Sbjct: 246 QVKLNRKVNALVRDVDLGVDIEDLTFGAVDVAQIDALFKELEFGPRTRSRVLKTFNTGAK 305

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                                       N+    +    E+ ++
Sbjct: 306 ------------------------------------------VSNTSGAGESTNNEQDKQ 323

Query: 358 LSQYPINNDSYTKIVNTKDIQQWV----QKLETIGSASFKIITDTMD-----AFHSKPIA 408
            S   +N    T I   +   +WV     +++  G  +   ++D  D           + 
Sbjct: 324 DSNLDLNLPEPTSITAPEQFDEWVKAHRAEVKVPGEIADFTVSDYGDGSQRHTVCGDAVG 383

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            A +     D+   +     I ++  TS  +     +T  + + L +F ++EH   I H 
Sbjct: 384 HAWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHG 442

Query: 469 IKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
            K    +L    + M     D  L  Y+      +  +   A+ +L     E  +  + +
Sbjct: 443 YKELLHLLGAVDLDMDLPMFDTKLAGYLTQPDFHADSLKQAAEHFLDLHFTETEQPSQGT 502

Query: 528 IPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +  D    +    EH + +  +I  L + L P +   +   +   ++ P+  V+  ME T
Sbjct: 503 LDFDDDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHT 562

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D   L  +  + +      +E  ++ +G + NL SPKQL  +LF  +      +TK
Sbjct: 563 GAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTK 622

Query: 647 TGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +G + T A  L+ +      N   N  +  +L  R+++K+K     +L +  N   +R+H
Sbjct: 623 SGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIH 681

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILA 759
           T +      TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A
Sbjct: 682 TTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMA 741

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            ++    L + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S + LA 
Sbjct: 742 DLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQ 801

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           QL+I   EA     RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S     
Sbjct: 802 QLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVA 861

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R   ERAA+NAPIQGSAADI + AMI   ++L +  + + ++LQIHDELV E+   E   
Sbjct: 862 REAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSCIILQIHDELVVEIAPGEGDQ 921

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++++ ++ME A    ++L VPL V+  + ++W
Sbjct: 922 VTELVRNAMEHA----VDLAVPLDVSCGIGSDW 950


>gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
 gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
          Length = 875

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/984 (32%), Positives = 498/984 (50%), Gaps = 119/984 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++D +S + RAFYA P L    +G+  NAI GF NML K+ +  + +    +
Sbjct: 1   MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKMKEEIKPD----Y 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+E Y DYKA R K+PE L  Q P+V+    A  I   EI GFEADD+
Sbjct: 55  IVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKDLLAALAINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++G  V I++ DKD +QL +    +  T K     E  D   +I+++G+ P
Sbjct: 115 IGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + ++ L GD+ DNIPG+PGIG KTA  L++EY ++E +L                E 
Sbjct: 175 KEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVL----------------EN 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +                           G +L   L       + ++   T  C+ 
Sbjct: 219 IENIK---------------------------GKKLKENLHEYREQAIFSKKLATIICN- 250

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V +D++  + K              +  +F SL ++  K + E+           
Sbjct: 251 -----VPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKSDEEE----------- 294

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     SY  IV+ ++ +     +            D    F  + I +   +  +
Sbjct: 295 ----TVEEEVSYKNIVSLEEFKVLKNNIIKYK------ENDLYLYFELEDIVLFSKSRIK 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +FK E   ID                ++ +   K+ FE++   KI ++ K  + +L
Sbjct: 345 TLYANFKDEVYRIDF-------EMLLKNTKEQFIEVCKEIFESKEIKKITYDAKNPRTIL 397

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
            + GI   G   DI L +Y++D  R  ++I+S+A ++L        EILK          
Sbjct: 398 RKLGIEFNGIKFDINLAAYLIDPVRKEYEISSLASEYLFKNINREDEILK---------- 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                     I+  N++ +L+ +L  K+  + +  +  ++++P+ + +S ME  G ++D+
Sbjct: 448 ----------IKEVNMMPKLYKVLEEKIKEQDMEELLYKVEQPLTETLSAMETEGFKVDK 497

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D+L Q+  +    + S +  IY +S E+FN++SPKQLG ILF KL  P   KTKTG + T
Sbjct: 498 DILLQLEKKFKGEIESTQLEIYSMSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YST 556

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ L+++    +PII  I  +RQL+KI STY + L   I++  + +H+ ++   T TGR
Sbjct: 557 NAEVLDKLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDEDGK-IHSNFNQTVTATGR 614

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S EPNLQNIPIK ++G++IR+ FI       ++SADYSQIELR+LAHI+    +   F
Sbjct: 615 LSSTEPNLQNIPIKYEMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAF 674

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   A+E+F V IE+V+P MR +AK +NF I+YGI  F L+  L I R EA  Y
Sbjct: 675 NEHDDIHTKTASEVFKVPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQY 734

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y  R+P +  Y+E       + GYV TI  RR +  E+ S    ++   ER A+N+P
Sbjct: 735 IDAYLERYPNVKLYLENIVEEAVEKGYVNTILNRRRYIKEVKSSNKIVKAAGERLAMNSP 794

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM++VH+ L++    + ++LQ+HDEL+  V ++E+     ++   ME+ 
Sbjct: 795 IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKKEMEQV 854

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
               + L+V L V+I + NNW E 
Sbjct: 855 ----LELKVGLDVDINIGNNWYEA 874


>gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 885

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/980 (32%), Positives = 512/980 (52%), Gaps = 107/980 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + ++DGSS  +RAFYA PLL  K  G+  NAI GF  ML   +      +      V
Sbjct: 2   KKKILIIDGSSLFFRAFYALPLLKTKR-GIYTNAIYGFIMMLENAISKINPNN----VVV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++IY DYK  R K P  L  Q P+VR       I  +E   +EADDI  T
Sbjct: 57  CFDMKGKTFRSDIYKDYKGTRQKTPSELEQQFPIVREILSLMNIKTLESPIYEADDIAGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            + IA +  +   +++ DKD  QLV   T +  T K     E I +E + + +GI P++ 
Sbjct: 117 ISLIASENNYESILLTGDKDYFQLVDDNTKVLLTRKGITDLEIISVESIEESYGINPKQF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD+ DNIPG+PG+G KTA  L+ EY N+                EN+ +  + 
Sbjct: 177 IDLKGLMGDNSDNIPGVPGVGEKTALKLIHEYSNI----------------ENLYDNIDN 220

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                       +G +L   L+  +    +++   T   +    
Sbjct: 221 I---------------------------SGKKLKENLETNKMQAFMSKKLGTIVRNV--- 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE-RLQKL 358
            P+ ++I+               D       F  LS    +       Q+L +E + + +
Sbjct: 251 -PLDMEID---------------DFAYADYNFDELSKLYREYEFNSLLQRLPVEYQKENI 294

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            +   ++  Y        I   + +++   S +FKII+D                     
Sbjct: 295 VETSSDDFEYRN----MSIDDIIFEIKNSKSFAFKIISDG-------------------- 330

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +   FI + V        K    ++IL   K  FE+E+  K+GHN+K D + L  
Sbjct: 331 KIYEGIMPNFIAIKVQNEATCIIKIDCKEDILK-FKDVFEDENIEKLGHNLKEDMITLLN 389

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP---IDKIS 534
           + I+++ +  D  +  Y+L+S  S++DI +I+  + S   K++ +             + 
Sbjct: 390 FDINIKNYTHDSEIAEYILNSTESNYDINNISNTYFSRGYKDLEELLGKGKKKIKFSDLK 449

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++ ++     N + +L  +   K+  +++  +Y  ++ P+I+V+S ME+ GI+ D  +
Sbjct: 450 YDELCKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIGIRTDNAI 509

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++  ++   +L+LE +IY+ +GE+FN++SPK+LG ILF KL +P   KTKTG + T A
Sbjct: 510 LDEIGIDLDNKILNLENDIYEKAGEEFNINSPKKLGLILFDKLGYPVLKKTKTG-YSTNA 568

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    + II ++LE+R+L+K+KSTY + L   IN  T  +H+ ++   T TGR++
Sbjct: 569 DVLEKLKKDGD-IIDDVLEYRKLAKLKSTYVEGLKELINVATGHIHSHFNQTITSTGRIS 627

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPIKTD G+ IR+AF+S     L+ ADYSQIELR+LA I+K   +   FEN 
Sbjct: 628 STNPNLQNIPIKTDEGKLIRKAFLSSEGCVLVDADYSQIELRVLADISKDENMISAFEND 687

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AA++FGV+ E V+P +R  AK +NF I+YGIS + L+  L IPR  A +YI+ 
Sbjct: 688 DDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNFGIVYGISDYGLSQNLNIPRKLAQEYIEN 747

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   + GI  Y+ +     ++NGYV+TI  RR +  E+++   +IR+  ER AIN PIQG
Sbjct: 748 YLLTYDGIKNYMTEEVKLAKKNGYVKTILNRRRYIPELSAKNFNIRSFGERIAINTPIQG 807

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+ V+++L+++ L +K++LQIHDEL+ +  E+E+ T  +++ + ME A   
Sbjct: 808 SAADIIKIAMVKVYRALKENNLKSKLILQIHDELIVDAREDEVETVKKLMRNIMENA--- 864

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            + + V LKV+++  ++  +
Sbjct: 865 -VEMVVKLKVDMQTGSSLYD 883


>gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
 gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
          Length = 866

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/976 (32%), Positives = 502/976 (51%), Gaps = 119/976 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+ ++ + +    +    
Sbjct: 2   KRLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKMREDIKPD----YIVCT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII + 
Sbjct: 57  FDKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + +
Sbjct: 117 AKVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTA  L++EYG++                E +LE  +  
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSV----------------EAVLENIDNI 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      +G +L   L       + ++   T   +     
Sbjct: 221 ---------------------------SGKKLKENLTEYSEQAIFSKKLATIMTNV---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+  D++  ++K    + ++         Q  S+ D+ S                     
Sbjct: 250 PIDFDLDEIKSKDDYNKDQLK--ALFTKLQMKSILDKLSNG------------------- 288

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                +   KI N +  ++     + I                 + + I  + L+++  +
Sbjct: 289 EEEEPEIEVKITNIESNKELEDLFKNIN----------------EEVYINFTYLNKEKYS 332

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + +++ IFI+        +  +    +E +   K+FFENE  LK G++IK     L + G
Sbjct: 333 TIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEDILKNGYSIKNALTALKKLG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I   G   D  L +Y++DS +  + + S+   +LS                 K  + +  
Sbjct: 393 IDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-----------------KFPNVKDG 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S ME  G ++++D+L ++S
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSSMESIGFKVNKDILDELS 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P   KTKTG + T A+ LE+
Sbjct: 496 IKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII+ I  +RQLSKI STY + L + I+       TF +   T TGRL+S EPN
Sbjct: 555 LK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGSIHSTF-NQTVTTTGRLSSTEPN 612

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ FI       LISADYSQIELR+LAHI+    +   F +  DIH
Sbjct: 613 LQNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIH 672

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L I R EA +Y+  YF R
Sbjct: 673 TKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFER 732

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EYI K  +  +  GYV T+  RR +  E N+    ++ + ER A+NAPIQG+AAD
Sbjct: 733 YPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAAD 792

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V+  L++  L +K++LQ+HDEL+  V + E+    +++   ME      I L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKLLKEEMEN----TIKL 848

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V++ V  +W +
Sbjct: 849 SVPLDVDVNVGEDWYK 864


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/977 (29%), Positives = 482/977 (49%), Gaps = 83/977 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++D   F +R+FYA P   +  DG P   + GF N +  L    +K+  + +    
Sbjct: 3   KTVTVIDTFGFFFRSFYALPQHLKNKDGFPTGLLTGFTNFISTL----QKQHDSDYLIFA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFRNE+ P+YKANR   PE L  QLP+        G   +   GFEADD+IAT 
Sbjct: 59  IDTKGNTFRNEVDPNYKANRTAPPEELTMQLPIAIEWIDKMGYKTLGQVGFEADDLIATV 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              A+++G+ V ++S DKDL QL+      + D +K + +D +    K+G+ P++ +  Q
Sbjct: 119 VKHAKEKGYNVRVVSHDKDLYQLIDDGRVVVVDAIKRKSMDEDACFLKYGVTPKQFIDYQ 178

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           ++ GDS DN+PG+ GIG   A  LL +YG+L+NI  N   IK    ++ + +  + A +S
Sbjct: 179 SILGDSADNVPGVKGIGKVGAEKLLVQYGDLDNIYANIDEIKPPGIQKKLRDSQDEAYMS 238

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           + LV LR D+     LE    E+        FL                           
Sbjct: 239 KVLVTLRDDI-----LEEFDFEEYKMDVEHPFLNIY------------------------ 269

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                              D  ++  Q + L    +K       ++  + R++++ +   
Sbjct: 270 -------------------DELVQYEQNAILRVLHAKNMVSDEAKEEAVLRVEEVKETKN 310

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            +   T I + +++Q+ +Q L+     +F   T  +D    K +  + S     DD +F 
Sbjct: 311 LDFKATLITDNEELQKVLQALKPETIVAFDTETTGLDYEKDKLVGFSFSF---NDDEAFY 367

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--GI 481
           V      L V             K+    +KK F   +   +GHNIK+D   + R+    
Sbjct: 368 VPFAHFYLGVP-------DQISEKDAALAMKKIF---NSKVVGHNIKFDLHFVSRFLNDD 417

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +  + D M+++++++   S+  +  ++ K L +T      + K       +      ++
Sbjct: 418 MLNIYSDSMILAWLINP-ESALGLDKLSDKLLDHTMLGFKDTVKKGETFASVELEDASKY 476

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVY---ERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           A E++ + L+L+ L   KL ++   H+    + ++ P I  +  ME  GI++D + L+  
Sbjct: 477 AAEDAYITLKLFNLFNEKLKLQDATHLIDESQNVEVPFITTLLGMEKDGIRVDAEFLEVF 536

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E+ + LL+L + IY+ +G +FN++S KQLG ILF  L  P G KTKTG   +T +++ 
Sbjct: 537 LVEVKETLLNLTKTIYEQAGTEFNINSTKQLGVILFEHLGLPVGKKTKTGY--STDENVL 594

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLE 717
                 + II ++LE+R++ K+ STY + L    +  +  R+HT +    T TGRL+S  
Sbjct: 595 SSLKDKHEIISSLLEYREIYKLYSTYIEPLLKLSLEDKEGRIHTSFVQTGTATGRLSSKN 654

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP +T  G KIR AF++P  KKLI  DYSQIELR+LAH ++   L   F  + DI
Sbjct: 655 PNLQNIPARTSQGLKIREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANKDI 714

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A  +FG   E+ +P  R  AKT+NF ++YG+   +L+  L I   EA + I++YF 
Sbjct: 715 HLQTAIALFG---EEEAPSKRAVAKTVNFGLLYGMGQKKLSETLGITTKEAKEIIEKYFE 771

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            FP +  Y     +  ++ GYVET+  RR ++D   +     R   +R ++N+  QGSA+
Sbjct: 772 SFPTVKTYFRSIVDNSKEMGYVETLLKRRRYFDYETAS-PMFRAAYDRESVNSVFQGSAS 830

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ + +M  +   +++ KL  KMLLQIHDEL+FEV  +E           ME        
Sbjct: 831 DLIKLSMNKIATVIKEEKLNAKMLLQIHDELIFEVDADEAEMLGNRFKEIMEN----IYE 886

Query: 958 LRVPLKVNIKVSNNWQE 974
           L +PL+ ++ + +NW +
Sbjct: 887 LNIPLEASMNIGDNWGK 903


>gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057]
          Length = 880

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/991 (32%), Positives = 493/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  IET       +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PITIGLDDLVYKGPQIETLSKFYDEMGFKQLK------AQLGTAQDPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + +   +
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVG--L 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 AKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTVLPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERENLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IKLAVPLVADENAGQTWYEA 879


>gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 893

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/984 (29%), Positives = 467/984 (47%), Gaps = 101/984 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++    ++DGSS  +RAFYA  L    H G+  NAI GF  ML KLL    KE   S 
Sbjct: 1   MTEK--FAVIDGSSLFFRAFYALQLPPNTH-GVHTNAIHGFAMMLVKLL----KEHAPSQ 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD    TFR  +YPDYK  R K PE L+ Q+PL++      GIP +E+  +EADDI
Sbjct: 54  IVIAFDKSRTTFRTALYPDYKGTRDKTPEELIEQIPLLKELAACLGIPFVELDDYEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A   G A  +++ D+D +QL+ P   +  T K      + D     +++G  P
Sbjct: 114 IGTLGTQAAAAGAAAIVVTGDRDALQLIRPGLDVLLTKKGISDTRRYDTAAFEEEYGFAP 173

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ L+ L GDS DNI G+PGIG KTA  LL  YG +E++L +A  +  KK   +++EY
Sbjct: 174 LRLIDLKGLMGDSSDNILGVPGIGPKTATKLLLSYGTIESVLDHAGEVAGKKLSASLIEY 233

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            + A LS++L  ++ DVP             +   L +F +  E   +   ++      A
Sbjct: 234 RDQALLSKELATIKCDVPELRYTAEGFRMQPDRAALETFCRTYELRSVWRSLSEFLAPAA 293

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             +                          ++ S F++  ++ ++I+         L+   
Sbjct: 294 QEMH-------------------------VEQSLFAAPEEEKTEIDLTPLELDASLDPAS 328

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                                 ++ +++   G        +    F     A+A+S  D 
Sbjct: 329 L---------------------RFAERITVAGVF------EGTAPFL-NLAALALSYGDV 360

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +                              E+LS L +         +  + K      
Sbjct: 361 RGVLHASSAHF-------------------TEVLSILSE------RPVVLWDAKRYVQAG 395

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDK 532
             +G       D+ L  Y+L        +   A  +L         E          +  
Sbjct: 396 MTFG---AEVFDLALADYLLRPEERQRSLDRAASAYLDELSAPQTAEDRTLSAVYSHLAN 452

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            +    ++ A     +  QL+  +   L    L  +Y  ++ P++ +++ ME TG+ +++
Sbjct: 453 GAPLHNEQIAFYEVILAAQLYGPMSAALADANLTELYGTVELPLVPILAAMERTGVAVNR 512

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L +  A  +  +  +E++IY L+G +FN+SSPKQLG++LF +L   S    KT    +
Sbjct: 513 AALGRALAAANARIAEIEQDIYALAGTEFNISSPKQLGEVLFDRLGLTSPKMKKTKTGYS 572

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T  ++ +     +P++  +L +R  SKI+STY + +   I   T RVHT ++   T TGR
Sbjct: 573 TNAEVLEEMRAAHPVVDRVLTYRMWSKIRSTYLEGIGALIRPDTGRVHTSFNQTVTATGR 632

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVF 771
           L+S +PNLQNIP++T+ G+ +R  F        L+SADYSQIELRILAH++    L   F
Sbjct: 633 LSSSDPNLQNIPVRTEEGRAVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAF 692

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   A+E+FGV + +V+   RR AK +NF I+YG+S + L+  L IPR EAA Y
Sbjct: 693 LQGQDIHARTASEVFGVPLAEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGY 752

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+RYF R+ G+  ++++       NG+V T++GRR     INS     R+  ER A+N P
Sbjct: 753 IERYFERYHGVRAFLDRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTP 812

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AAD+ + AMI    +L    + +++LLQ+HDELV EV  +EI   ++++  +M  A
Sbjct: 813 IQGTAADLIKIAMIRADAALRAAGVKSRILLQVHDELVLEVVNDEIAQVTELLTAAMSGA 872

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
                 L VPL V++    NW E 
Sbjct: 873 A----QLAVPLAVDVHTGKNWAEA 892


>gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
 gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
          Length = 889

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/987 (33%), Positives = 488/987 (49%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  LL+  +     S
Sbjct: 14  DKKKLLLIDGSSVAFRAFFALYQQLDRFKNDNGLHTNAIYGFHLMLNHLLERIQ----PS 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 70  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AEKE F VTI+S DKDL+QL    T +  + K     E    +++++K GI 
Sbjct: 130 IIGTLGRLAEKESFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGIT 189

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I                 E
Sbjct: 190 PTQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIY----------------E 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             ++ + S+                  + E+    +  +FL         ++   T D  
Sbjct: 234 NIDSMKASK------------------MKENLVNDKEQAFL---------SKTLATIDTK 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + ++     G  +E        +   Q      Q   I+S   P+ L    +
Sbjct: 267 A----PIEIGLDDLVYSGPDVENLGKFYDEMGFKQLK----QALNISSTDAPESLNFTIV 318

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            ++SQ  ++ DS                        F       +      +  A S  D
Sbjct: 319 DQVSQDMLSADS-----------------------IFHFELFGENYHTDDLVGFAWSCGD 355

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++    LK F E        ++ K  K++
Sbjct: 356 K--------------------LYATDKLELLQD--PILKDFLE--KTPLKVYDFKKAKVL 391

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R+G+ ++    D  L  Y+L S   +++I++IA  +      +      K  K +IP 
Sbjct: 392 LNRFGLDLQAPAFDSRLAKYLL-STVENNEISTIANLYGQTYLVDDETFYGKGVKKAIP- 449

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                    EH      V+++   +L  KL     L +   +++P+  V+++MEI GI++
Sbjct: 450 ---ERETFLEHLARKVAVLVETEPVLLEKLCENGQLDLLYEMEQPLAFVLAKMEIAGIKV 506

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG++LF KL  P     KT   
Sbjct: 507 KKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGELLFEKLGLPIEYTKKTKTG 566

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYMQDLTQT 625

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 626 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 685

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L+  L I R +A
Sbjct: 686 AFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGISRKDA 745

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 746 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 805

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L +    TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 806 NSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAIKKLVKQTM 865

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 866 EEA----IQLSVPLIADENEGVTWYEA 888


>gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 888

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/974 (28%), Positives = 454/974 (46%), Gaps = 98/974 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  YRAF+A P  +     G P NAI GF +ML   L++       +HFAV FD
Sbjct: 1   MLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASMLANTLRDE----APTHFAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T+R++ + +YKANR K P+    Q+ L+     A G     + GFEADD+IAT   
Sbjct: 57  VSRKTWRSQEFTEYKANRSKTPDEFKGQVDLICELLDAMGAARFAVDGFEADDVIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE EGF V I++ D+D  QLVS  T +    K      +   E V +K+G+ P +    
Sbjct: 117 QAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+PGIPG+G KTAA  + ++G+   ++     +K  K  +N+ ++ E    
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVEEVKG-KAGQNLRDHLEAV-- 233

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                       +L   L  LE    + +  T  +  A + + V
Sbjct: 234 ----------------------------KLNRRLTELERRVELPKGVTDLERAAYDRKAV 265

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            + ++T E +  ++   +              +       +E TP      +L       
Sbjct: 266 AMVLDTLEIRNPSLRERL-------------FAVDPGAEEAETTPISTEGVQLDG----- 307

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                   ++ T ++  W+ +  T       + T  +            S  +       
Sbjct: 308 -------TVLGTGELTGWLSEHGTQPLGIATVDTWALGTG---------SVAEIALAAPG 351

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                F    +  + +      L                  KI HN K    V   +G S
Sbjct: 352 GPAAWFDPSQLDEADERAFAAWLADA------------ARPKILHNAKGAMRVFAEHGWS 399

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + G   D  L +Y++  GR S D+ +++ ++L    +E+  + ++   +    D   +  
Sbjct: 400 VEGVTMDTALAAYLVKPGRRSFDLDALSLEYLH---RELAPAAEADGQLAFGEDEGAEAE 456

Query: 542 AIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A+   +  +L L      +L       +   ++ P   ++++ME  GI  D+  L+ +  
Sbjct: 457 ALMIQARAVLDLGEAFESRLEEVGAADLLRDMELPTSALLARMERHGIAADRAHLEAMEQ 516

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
             +  +    +  +  +G +FNL SPKQL ++LF +L  P   +TKTG            
Sbjct: 517 MFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPKTKRTKTGYTTDADALAWLA 576

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              DN +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+S +PNL
Sbjct: 577 GQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLSSTDPNL 634

Query: 721 QNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  D+H 
Sbjct: 635 QNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHT 694

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A+++F V    V  +MRR  K +++ + YG+S F L+ QL I  +EA   +  YF RF
Sbjct: 695 TAASQVFAVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARALMDAYFERF 754

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ +Y+ +  +  R  GY  T+FGRR +  ++NS     R   ER A+NAPIQG+AADI
Sbjct: 755 GGVRDYLRRAVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADI 814

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++V  +L+D  L ++MLLQ+HDE+V EV   E  TA +++   M  A    + LR
Sbjct: 815 VKIAMLNVDSALKDAGLTSRMLLQVHDEIVLEVAPGERATAEELVRREMANA----VQLR 870

Query: 960 VPLKVNIKVSNNWQ 973
           VPL V++    +W+
Sbjct: 871 VPLGVSVGSGPDWE 884


>gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
 gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
          Length = 866

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/976 (32%), Positives = 502/976 (51%), Gaps = 119/976 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+ ++ + +    +    
Sbjct: 2   KRLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKMREDIKPD----YIVCT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII + 
Sbjct: 57  FDKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + +
Sbjct: 117 AKVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTA  L++EYG++                E +LE  +  
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSV----------------EAVLENIDNI 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      +G +L   L       + ++   T   +     
Sbjct: 221 ---------------------------SGKKLKENLTEYSEQAIFSKKLATIMTNV---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+  D++  ++K    + ++         Q  S+ D+ S                     
Sbjct: 250 PIDFDLDEIKSKDDYNKDQLK--ALFTKLQMKSILDKLSNG------------------- 288

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                +   KI N +  ++     + I                 + + I  + L+++  +
Sbjct: 289 EEEEPEIEVKITNIESNKELEDLFKNIN----------------EEVYINFTYLNKEKYS 332

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + +++ IFI+        +  +    +E +   K+FFENE  LK G++IK     L + G
Sbjct: 333 TIEIDKIFINYDEKNYLINFKELVKEEENIKAFKEFFENEDTLKNGYSIKNALTALKKLG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I   G   D  L +Y++DS +  + + S+   +LS                 K  + +  
Sbjct: 393 IDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-----------------KFPNVKEG 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S ME  G ++++D+L ++S
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSSMESIGFKVNKDILDELS 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P   KTKTG + T A+ LE+
Sbjct: 496 IKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII+ I  +RQLSKI STY + L + I+       TF +   T TGRL+S EPN
Sbjct: 555 LK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGSIHSTF-NQTVTTTGRLSSTEPN 612

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ FI       LISADYSQIELR+LAHI+    +   F +  DIH
Sbjct: 613 LQNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIH 672

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L I R EA +Y+  YF R
Sbjct: 673 TKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFER 732

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EYI K  +  +  GYV T+  RR +  E N+    ++ + ER A+NAPIQG+AAD
Sbjct: 733 YPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAAD 792

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V+  L++  L +K++LQ+HDEL+  V + E+    +++   ME      I L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKLLKEEMEN----TIKL 848

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V++ V  +W +
Sbjct: 849 SVPLDVDVNVGEDWYK 864


>gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 885

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/980 (33%), Positives = 513/980 (52%), Gaps = 107/980 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N   ++DGSS  +RAFYA PLL  K  GL  NAI GF  M+   ++  +     +H AV
Sbjct: 2   DNKFLIIDGSSLFFRAFYALPLLKTKR-GLYTNAIYGFVMMVENAIEKVK----PTHLAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+EIY DYK  R K P  L  Q PLVR       +  +E   +EADDI  T
Sbjct: 57  CFDMKGKTFRSEIYKDYKGTRQKTPNELEQQWPLVREILGHMNVKILESPVYEADDIAGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
            + +  +EGF   +++ DKD  QLV+  T +  T K     + + +E + + +GI P + 
Sbjct: 117 LSKLGTEEGFENYLLTGDKDYFQLVNEKTKVLFTRKGITDMDIMTVEKIKEDYGIEPLEF 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GDS DNIPGI GIG KT   L+ E+  +EN                + +  + 
Sbjct: 177 IELKALMGDSSDNIPGIYGIGEKTGLKLIHEFHTIEN----------------LYDNID- 219

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                     D +G +L   L   + +  +++   T   D    
Sbjct: 220 --------------------------DVSGKKLKEKLIEGKMSAFMSKKLGTIVKD---- 249

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             V L+ +  + K +  + E       +  +F+S+ D+  +   ++  +++  +  +   
Sbjct: 250 --VPLEESLDDFKKVDYDYE-KLSELYREFEFNSMLDRLPEEYRKEEVEEISQDNFEF-- 304

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                       V  KD+++  + L+   S +FK ITD       KPI +A+        
Sbjct: 305 ------------VEIKDLKEIEKDLKDKKSLAFKFITDGKIYEDVKPIYLAVKV------ 346

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                            +DS  K    +EI   +LKK  E+E   K+G+++K D ++L  
Sbjct: 347 -----------------KDSEVKFISYEEIDFDFLKKIMEDEKVEKLGYSLKEDIIILMD 389

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534
            GI ++ +  D+ +  Y+L+S +S +DI  I+  +        +++L           + 
Sbjct: 390 LGIDIKNYSHDVEIAEYLLNSTQSDYDINKISMAYFKNGYLDLEDLLGKGAKKKTYADLD 449

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + ++     N I +L  L + K+  E++  +Y+ ++ P+++V++ ME  GI  D+ +
Sbjct: 450 KDDLFKYFAFVLNTIYRLEDLQKEKIDEEEMTSLYQDMELPLVEVLASMEYVGINTDEAV 509

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++  +I + L +LEE IYD +GEKFN++SPKQLG ILF K+ FP   KTKTG   +T+
Sbjct: 510 LDEIDKQIIEKLKTLEEEIYDEAGEKFNINSPKQLGVILFDKMDFPVIKKTKTGY--STS 567

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +   G   II  IL++R+ SK+KSTY D L   INK+T+R+H+ +    T TGR++
Sbjct: 568 ADVLEKLRGKGEIIDKILDYRKFSKLKSTYIDGLKAVINKKTKRIHSRFMQTVTATGRIS 627

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPIKT+ G+ IR+AF++     L+ ADYSQIELR+LA ++    +   F++ 
Sbjct: 628 STDPNLQNIPIKTEEGRLIRKAFLASEGGVLVDADYSQIELRVLAALSDDKEMLDAFKHG 687

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIHR  A+E+F V+ ++V  + R  AK +NF I+YGIS + L+  L IPR  A +YI  
Sbjct: 688 LDIHRKTASEVFHVDYDEVDDRQRYEAKAVNFGIVYGISDYGLSQNLNIPRKAAKEYIDN 747

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   F GI +Y+ +     +  GYVETIF RR +  E+N+   +IR+  ER A+N PIQG
Sbjct: 748 YLGHFVGIKDYMAEEIKNGKDKGYVETIFKRRRYIPELNAKNFNIRSFGERIALNTPIQG 807

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+ V+  L+   L +K+++QIHDELV +  E+EI    +++   ME     
Sbjct: 808 SAADIIKIAMVKVYNELKKRNLKSKLIIQIHDELVVDTAEDEIEEVKELMKDLMEN---- 863

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            ++L V L V++    N  E
Sbjct: 864 SVDLNVKLSVDMNTGANLYE 883


>gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi]
 gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi]
          Length = 909

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/980 (33%), Positives = 503/980 (51%), Gaps = 80/980 (8%)

Query: 5   NHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L+L+D  + I+R ++     PLL+    G  VNA  GF   L+ +++    E    H 
Sbjct: 2   KELYLIDALNIIFRNYHVLKNYPLLNT--QGENVNAFIGFFKTLFFIIKEKNPE----HL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR + YP+YKA R   P  L+PQ+  ++       IP  EI G+EADDI+
Sbjct: 56  IIAFDSEMPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIDGYEADDIL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKM 179
           A++   AEK G+   IIS DKDL+Q +S    +         +++ E+VIKK+GI   ++
Sbjct: 116 ASFAKKAEKNGYLTYIISPDKDLLQTMSEYIKILKIENNSFIEMNNEYVIKKFGINSFQI 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               A+ GD  DNIPGI GIG K AA LL+E+  L+ I  N   I  KK +E +++  E 
Sbjct: 176 KDYLAIVGDRSDNIPGIKGIGSKGAANLLREFKTLKGIYSNLELI-NKKHQEILIKEKEN 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS  LV L  ++ I   +E+  L++ N   +IS  +      LI     TY  D    
Sbjct: 235 AFLSYDLVSLEENLQIP-EIENFYLKNFN-EEIISLFEKHSAVALIK----TYKKDILKK 288

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +   L                            SL +Q S   S      +  E      
Sbjct: 289 KEENLGQK-------------------------SLFEQESITKSLNALNTIDTE------ 317

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N  Y  I   K++   ++ L+     S    T ++D + +K I I+IS  + +  
Sbjct: 318 -----NVKYYSITTKKELDNLIEGLKQANYISIDTETSSLDTYTAKLIGISISFKEFEG- 371

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   +I +      ++ GK  + K  I+      F++ +   IG N K+D  +L  
Sbjct: 372 -------YYIPI------ETKGKIYIEKHYIIQKFNNLFKS-NPKIIGQNYKFDYKILKN 417

Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G S +  + D M+ +Y++D+  S   +  +A+K+L +   +     + +     IS   
Sbjct: 418 NGFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              ++ E++++  +L+ +   KL  ++L  +   ++ P  +V+ +ME  GI +D++ LK+
Sbjct: 477 ATSYSCEDADITFRLFNIFTEKLKEDELYELMHEIEMPFNNVIIEMEENGIYLDKEYLKE 536

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K L  +E  I    G  FNL+SPKQ+ +ILF KL      K K     T  + L
Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKD--STDIKVL 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +    +  I N+++ R+++K+KSTY D+L   IN +T R+HT +    T TGR+ S+ 
Sbjct: 595 ESLR-EQHESIGNLIKHRRIAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSIN 653

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPIK + G+KIR+AF        ISADYSQIEL ILAH+++   L + FEN+ DI
Sbjct: 654 PNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDETLIKAFENNKDI 713

Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A+++F +   EK++P +RR AK+INF IIY +S FRLA +L I + EA  +I  YF
Sbjct: 714 HIETASKLFKIEEKEKITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYF 773

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P I E+I    NFV+  GY ETI  RR +  EINS     R+  ER AIN+ IQGSA
Sbjct: 774 DSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSTIQGSA 833

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD  + AMI V    ++ K+ +K+LLQ+HDE++ E P +E     +I+   ME A     
Sbjct: 834 ADYMKIAMIKVFNEFKNKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETA----Y 889

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L +PL+ NI+   +W E +
Sbjct: 890 TLNLPLRANIETGKSWGEIH 909


>gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13]
 gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13]
          Length = 866

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/975 (32%), Positives = 500/975 (51%), Gaps = 119/975 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+ ++ + +    +    
Sbjct: 2   KRLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKMREDIKPD----YIVCT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII + 
Sbjct: 57  FDKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + +
Sbjct: 117 AKVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTA  L++EYG++                E +LE  +  
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSV----------------EAVLENIDNI 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      +G +L   L       + ++   T   +     
Sbjct: 221 ---------------------------SGKKLKENLTEYSEQAIFSKKLATIMTNV---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+  D++  ++K    + ++         Q  S+ D+ S                     
Sbjct: 250 PIDFDLDEIKSKDDYNKDQLK--ALFTKLQMKSILDKLSNG------------------- 288

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                +   KI N ++ ++     + I                 + + I  + L+++  +
Sbjct: 289 EEEEPEIEVKITNIENNKELEDLFKNIN----------------EEVYINFTYLNKEKYS 332

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + +++ IFI+        +  +    +E +   K+FFENE  LK G++IK     L + G
Sbjct: 333 TIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEAILKNGYSIKNALTALKKLG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I   G   D  L +Y++DS +  + + S+   +LS                 K  + +  
Sbjct: 393 IDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-----------------KFPNVKEG 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  +     + +L L+L+ K+  EK+  +   ++ P+  V+S ME  G ++++D+L ++S
Sbjct: 436 EEDLVGITFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSSMESIGFKVNKDILDELS 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P   KTKTG + T A+ LE+
Sbjct: 496 IKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII+ I  +RQLSKI STY + L   I+       TF +   T TGRL+S EPN
Sbjct: 555 LK-DKHPIIEKITYFRQLSKIYSTYVEGLKAVIDTDGSIHSTF-NQTVTTTGRLSSTEPN 612

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ FI       LISADYSQIELR+LAHI+    +   F +  DIH
Sbjct: 613 LQNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIH 672

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L I R EA +Y+  YF R
Sbjct: 673 TKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFER 732

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EYI K  +  +  GYV T+  RR +  E N+    ++ + ER A+NAPIQG+AAD
Sbjct: 733 YPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAAD 792

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V+  L++  L +K++LQ+HDEL+  V + E+    +++   ME      I L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKLLKEEMEN----TIKL 848

Query: 959 RVPLKVNIKVSNNWQ 973
            VPL V++ V  +W 
Sbjct: 849 SVPLDVDVNVGEDWY 863


>gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
 gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
          Length = 867

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/977 (30%), Positives = 492/977 (50%), Gaps = 118/977 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D +S + RAFYA P L+   DG+  NAI GF NML K+      +S        
Sbjct: 2   KKLLILDSNSLMNRAFYALPPLTN-SDGINTNAIYGFINMLLKMKDEINPDS----IIAT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR++ Y +YKA R K+P  L  Q P+++   +  GI   E++GFEADD+I T 
Sbjct: 57  FDLKAPTFRHKEYSEYKAGRNKMPPELAEQFPIIKELFKLMGIKIFEVEGFEADDLIGTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           +  AE     V +++ D+D +QL S  T +  T K        D E  + ++ + PE+ +
Sbjct: 117 SKFAEDNNAEVFVVTGDRDALQLASEKTKIIITKKGVSETAVYDKESFMDEFEVTPEQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTA  L++EYG++E ++ N  +I  K     + E     
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEKVIKNIDKISGK----KLKE----- 227

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                             LE+ + +     +L + ++ +     +  +++    +   I+
Sbjct: 228 -----------------NLENNVEQAIFSKKLATIMREVPIELNLEDISSNNKENILEIK 270

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            +++ +                                          K  L + +  + 
Sbjct: 271 KMLIKLEM----------------------------------------KSILSKFKDDTV 290

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           +  +N     I   +D+++   ++         I     DA     + +    L +++  
Sbjct: 291 HEESNIEVRNITTIEDMKELFSEMRNR----IYIDYTLTDASRYSKLKLEYLILGEENKG 346

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +      F D+S   S          +E L  LK   E+++  K+ H+ K     L++  
Sbjct: 347 TI---IDFKDISSKDS----------EEALKVLKNLMEDDNVKKVIHDGKNFVTFLNKNQ 393

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I ++GF+ D  + +Y++DS +S ++I  +   ++                     +S+  
Sbjct: 394 IEIKGFDFDTAIAAYLIDSSKSKYEILELVNHYIG-----------------DNPNSEGS 436

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
                  + +  ++  L+  L  E +  +Y  ++ P+I V+S ME  G  I+Q +L ++ 
Sbjct: 437 NIKAILCSYLPMVYEKLKENLHKENMDQLYYEVEHPLIYVLSSMESIGFNINQGMLDELQ 496

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  K +   ++ IY+L+ E+FN+SSPKQLG ILF KL  P   KTKTG   +T Q++ +
Sbjct: 497 TKFKKEIDKTQKEIYELADEEFNISSPKQLGKILFEKLDLPVIKKTKTGY--STNQEVLE 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                + II  I+ +RQ++KI STY + L N +++   R+H+ ++   T TGRL+S EPN
Sbjct: 555 KLMNKHDIIPKIMYYRQITKINSTYVEGLKNVVDEDG-RIHSNFNQTVTTTGRLSSTEPN 613

Query: 720 LQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ FI    T  L+S DYSQIELR+LAHIA    +   FE+  DIH
Sbjct: 614 LQNIPIKYEMGREIRKVFIPMEETDILVSCDYSQIELRVLAHIAGDENMIDAFEHHSDIH 673

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V I +V+  MR  AK +NF I+YGIS F LA  L+I + EA +Y+  Y  R
Sbjct: 674 TKTASEVFKVPIGEVTSLMRSRAKAVNFGIVYGISAFSLAEDLKITKKEAEEYMSIYLER 733

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EY+E   +  ++ GYV TI  RR    EI S    ++ + +R A+NAPIQGSAAD
Sbjct: 734 YPKIKEYLENVVDEAKEKGYVLTILNRRRFIPEIKSSNKIVKALGDRLAMNAPIQGSAAD 793

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V+  L + +L ++++LQ+HDEL+  V ++E      ++ + ME A    I L
Sbjct: 794 IIKLAMVNVYNKLNEKELKSELILQVHDELILNVKKDEFEEVKNLVAYEMENA----IKL 849

Query: 959 RVPLKVNIKVSNNWQEE 975
           +V L V++   + W + 
Sbjct: 850 KVALDVDVNFGDTWYDA 866


>gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008]
 gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008]
          Length = 873

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/974 (30%), Positives = 473/974 (48%), Gaps = 110/974 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    +    + AV 
Sbjct: 2   KKLMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEINPD----YIAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + 
Sbjct: 57  FDKGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           +        AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++
Sbjct: 117 SKKFGAPEMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GDS DNIPG+PG+G KTA  L+ EYGNLE++  +   I  K     + E     
Sbjct: 177 EMKALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYEHIEDISGK----KLKE----- 227

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               +LV                             K L F   ++R   T   D     
Sbjct: 228 ----RLVEN---------------------------KELAF---LSRELATIKTDMELSY 253

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V   +       +            +T  F+ L+ +  ++   +       E       
Sbjct: 254 KVEDFVQNFHTSEV--------QPLFETLGFTKLTPRIVQVMGGE-------EAAFGDPG 298

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     + +  D +          + +  +I D    F          T+     +
Sbjct: 299 SLFAPQEEISLDDLADAKVLTADFYKDKTVAVHVILDGKTPFR---------TVTNTYLS 349

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           +        D     +     K  +T +    ++ F  +        N      V     
Sbjct: 350 NGDTIVKTDDTKAVLAVLQGAKAIVTTQTKEIIEAFGADVPAEISLFNADKTARV----- 404

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  D+ L++Y+LD  R+++    + +++              S+P   I+   V  
Sbjct: 405 ------HDMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIASGSVDV 442

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             +     +L +          E+L  +YE ++ P+I  +  ME  GI ID + L + + 
Sbjct: 443 ECVSMVKALLAMNEAACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTT 502

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              + L  +++ IY+L+GE FN++SPKQLG ILF K+  P   KTKTG   +T  ++  +
Sbjct: 503 RFKEELAQVQQEIYELAGENFNINSPKQLGVILFEKMNLPIIKKTKTGY--STDAEVLDM 560

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++PI++ IL +R ++K+ STY + L   IN +T+R+HT ++   T TGRL+S +PNL
Sbjct: 561 LRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTRRIHTTFNQMVTATGRLSSSDPNL 620

Query: 721 QNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F        L+SADYSQIELRILAH++    L + F    DIHR
Sbjct: 621 QNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHR 680

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G   + V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+
Sbjct: 681 FTAAEVLGKAQDDVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRY 740

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI
Sbjct: 741 PKVKEYMDRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADI 800

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM  + + LE+    +++LLQ+HDELV EV   E+    +++ ++M+      + L+
Sbjct: 801 IKLAMNQMEQKLEEQNFKSRLLLQVHDELVLEVVNSELEAIEELLRNTMQSV----VELQ 856

Query: 960 VPLKVNIKVSNNWQ 973
           VPL V++  + NW 
Sbjct: 857 VPLIVDVHHAENWA 870


>gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
 gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
          Length = 865

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/980 (32%), Positives = 505/980 (51%), Gaps = 128/980 (13%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DG+S  YRAF+A P ++    G   NA  GF  ML KLL+  +     +H  V
Sbjct: 3   ENKLLLIDGNSLTYRAFFALPPMTDAQ-GRNTNAAYGFTMMLLKLLEEEQ----PTHMLV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  + TFR+++Y +YK +R K P  L  Q P+VR   +A GI  +E+  +EADD+I T
Sbjct: 58  AFDASSETFRHDVYQEYKGSREKTPSELREQFPIVRDICEALGIQMMELHRYEADDLIGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG-IPPEK 178
                  +   + I++ DKDL+QLV+    +  T +       +  E   + +G + P +
Sbjct: 118 LAQTMPAD--RIRIVTGDKDLLQLVTSQVEVLITKRGITDVLCMTEELFAETYGGLKPIQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+ L+ L GD  DNIPG+PGIG KTA  L+  YG++E +  +   +K  K++E ++   E
Sbjct: 176 MIDLKGLMGDKSDNIPGVPGIGEKTAIKLISAYGSVEGLYEHVEDLKG-KQKEKVVANEE 234

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            ARLS                                 K L   KL              
Sbjct: 235 LARLS---------------------------------KELATIKL-------------- 247

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
              V LD+   + +   ++T++   +  ++  F SL+++ + +  E   ++L ++ +  L
Sbjct: 248 --DVPLDVTLDDLQISDVDTQVPY-SLFQSLGFKSLTNRFAPVVEEADKEQLNVQAITSL 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            +            +  D    V++L               D      I   I+T DQ  
Sbjct: 305 PE------------DVTDAVLVVEQLRE-------------DYMEEDIIGFGIATPDQIY 339

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             S ++                             + + E++H  KI  + K     L +
Sbjct: 340 VASAELVDDP-----------------------AFRDWIESDH-QKICLDAKQAAFALRK 375

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKISD 535
           +G+ +  F+D++L    L +      +ASIA  ++     E   + K  K   P D +  
Sbjct: 376 HGLKLTAFDDLLLAG-YLLNLSGGTTLASIAGHYMLMAPNEEAVLGKGAKRLAPADDV-- 432

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             +  +  E + +I  L+  ++ +L   +   +YE L++P+  V+++ME TGI++D   L
Sbjct: 433 --LHPYLAEKARMIELLFPKVKEELKANQQFELYETLERPLSGVLAEMEWTGIRVDVGTL 490

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +++  +++  L  LE+ IY   GE+FN++SPKQLG ILF K++ P+  KTKTG   +TA 
Sbjct: 491 QEMQHDLAGRLHDLEQLIYGEVGEEFNINSPKQLGVILFEKMELPAFKKTKTGY--STAA 548

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +     +P+I +I+ +R+L K++STY + L   I +  + +HT ++     TGRL+S
Sbjct: 549 DVLEKLRPLHPVIDHIMLYRELQKLQSTYVEGLQKVIKEDGK-IHTRFAQTIAQTGRLSS 607

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           + PNLQNIP++ + G+KIR+AF+   P   L +ADYSQIELR++AH+++   L Q F + 
Sbjct: 608 VNPNLQNIPVRIEEGRKIRKAFVPSEPGWSLYAADYSQIELRVMAHMSEDKTLVQAFLDD 667

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+ +FGV    V+  MRR AK +NF IIYGIS + L+  L I R EA D+I R
Sbjct: 668 ADIHTQTASSVFGVAPNDVTGNMRRQAKAVNFGIIYGISDYGLSQNLNISRKEAQDFIDR 727

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP I  +++      R NG+VET+  RR +  +INS   ++R   ER AIN PIQG
Sbjct: 728 YFELFPQIKLFMDAAIEKARMNGFVETLMNRRRNIPDINSKNFNLRGFAERTAINTPIQG 787

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI ++AM+ VH +LE   L  ++LLQ+HDEL+FE P+EE+     ++  +ME+    
Sbjct: 788 SAADIIKKAMLDVHAALEQSPLRARLLLQVHDELIFEAPDEELDALKTLVKQAMEQ---- 843

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            + L VPL+V+    ++W E
Sbjct: 844 TVQLSVPLRVDGDAGHSWYE 863


>gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
 gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
          Length = 879

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/981 (30%), Positives = 484/981 (49%), Gaps = 114/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG+S  YRAFYA P L  K  GL  N++ GF  ML K+L ++  +    +  V 
Sbjct: 2   DKIILIDGNSLSYRAFYAMPALKNKK-GLYTNSVYGFTLMLEKILADTNPK----YALVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y  YK  R K P  L+ Q   VR    ++GI   E   +EADDII +Y
Sbjct: 57  FDKGKQTFRHQSYEAYKGTRDKTPSELVEQFGYVRELLDSYGIKYEEHFDYEADDIIGSY 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             IAEKEG  V I++ DKDL QL S    +Y T +     +    E + +K+G+ P ++V
Sbjct: 117 AKIAEKEGLEVIIVTGDKDLTQLASENITIYYTKRGVTDIDYYTPEFIAEKYGLTPGQIV 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPGI G+G KTA  LL EY  +EN+L N   I  KK +E + E  E A
Sbjct: 177 DMKGLMGDKSDNIPGIAGVGEKTAIKLLTEYKTVENVLENIDNISGKKLKERLTEGREDA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS+                          +L +    +     +  +  + + +     
Sbjct: 237 LLSK--------------------------KLATIYTEVPVDNKLEDLTYSENVE----- 265

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                +    +  +F S   + S+  S +       + +    +
Sbjct: 266 --------------------LKRELFEKLEFVSFLKKLSQETSTEEVDMTAEKTVAPKKE 305

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I        ++  D    V+               T D  +S  + I +         
Sbjct: 306 VSIVLADKNTKIDFTDSTLHVECY-------------TEDYHNSDVVGIVVYKEGT---- 348

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                      +   S++    N    + L             K  ++ K    +  R G
Sbjct: 349 -----------AYIFSEEQFFTNEFVVDYLQ--------SEISKTVYDFKKILFIAKRNG 389

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKISD 535
           + + G   D+ ++SY+LD    + +I  I   +L        +   K  K ++P  ++  
Sbjct: 390 VDINGEVFDVKIVSYLLDVNAKT-EIDKIVFNYLGKIMSSDEEIYGKGAKRTLPAQEV-- 446

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             +  +  E +  I  +  L+  KL  E +  +Y+ ++  +  V++ ME  GI + +  L
Sbjct: 447 --INPYIAEIAESIALIKPLMEEKLAEENMTDLYKDIEIKVAKVLANMEYEGIHVSKKAL 504

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +++SAE  + + +LE +IY L+G +FN++SPKQLG +LF  L  P   KTKTG   +TA 
Sbjct: 505 EEMSAEFDERIKTLEASIYTLAGSEFNIASPKQLGVVLFEDLGLPPIKKTKTGY--STAV 562

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           ++ +     + II  I+E+R ++K+ STYA  L   I +  + +HT Y      TGRL+S
Sbjct: 563 EVLEQLQHSHEIIPLIMEYRTITKLNSTYAKGLVKDITREGK-IHTRYEQTLAQTGRLSS 621

Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           + PNLQNIP + + G+KIR+AF+ +   + ++S DYSQIELR+LAHIA+   +   F++ 
Sbjct: 622 VNPNLQNIPTRIEEGKKIRKAFVPASDDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHD 681

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A+++ GV++++V+  MRR AK +NF I+YGIS F L+  L I R  A ++I +
Sbjct: 682 VDIHTKTASDVNGVSLDEVTSSMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDK 741

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   F G+ +Y+    +F R++GYVET+F RR    +IN+    + N+N R A+N+PIQG
Sbjct: 742 YLETFKGVDKYMTDIVDFAREHGYVETLFNRRRALPDINAKNKIVANLNARIAMNSPIQG 801

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM++V + LE   +  K+LLQ+HDEL+F+V ++     ++ ++  ME+A   
Sbjct: 802 TAADIIKIAMVNVFEYLEKTNVDAKLLLQVHDELIFDVNKDIEEEFTKEMIKIMEEAA-- 859

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
             NL V LK       +W + 
Sbjct: 860 --NLDVQLKAEASSGASWYDA 878


>gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405]
          Length = 880

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/991 (33%), Positives = 495/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E        +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIKIGLDDLVYKGPQVEALSKFYDEMGFKQLK------AQLGTGQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + + +A 
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVGLAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                    S ++     DL     Q    +  LTK  L                +++K 
Sbjct: 344 -------GDSRQIYVGTSDL----LQQPLFQEFLTKTALKT--------------YDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISKDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 882

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/980 (28%), Positives = 475/980 (48%), Gaps = 115/980 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  L L+DG S  +RAFYA P+ +     G   NA+ GF +ML   +     ++    
Sbjct: 6   TNQPRLLLIDGHSMAFRAFYALPVDNFSTSGGQHTNAVYGFLSMLSNTVAEETPDA---- 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR E++PDYKA R   PE    Q+ L+R   +  GI  +  + FEADDI
Sbjct: 62  IAVAFDVGRKTFRTEMFPDYKAQREAAPEEFKGQVDLIREVLEVLGITTLSRENFEADDI 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           +AT    A  + +   I++ D+D +QLV+ +T +   +K      +     V +K+G+ P
Sbjct: 122 LATLATEA--QDYETLIVTGDRDYLQLVNESTTVLYPMKGVSTLHRFTPSAVEEKYGLTP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIP +G KTA   + +YG+L +++ +A  IK      N  E 
Sbjct: 180 AQYPDFAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEIKG-VVGNNFRER 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +++RKL  + TD+ + +    L  ++     +                        
Sbjct: 239 IEQVQMNRKLTQMITDMDLEVGPNDLAFKEAKVADV------------------------ 274

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                             A   +++  T+++    +++ +  ++  +EQ  Q   LE   
Sbjct: 275 -----------------AAKFDDLEFGTSLRDRVLAAIPNDGAEA-AEQAEQVQELE--- 313

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         +++ + + QW   L      +  +  +  +       AIA      
Sbjct: 314 -------------TVIDDEPLSQW---LPGREHVAVYVQGEG-NPGQGDASAIAF----- 351

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                       +D   H  Q   G   L+ E    L ++  ++   K  H  K    +L
Sbjct: 352 ------------VDQERHGLQVELGD--LSAEDDKALAQWLASDA-PKYFHEAKAAFHML 396

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              GI + G   D  L +Y+L  G+ ++ +A + Q+ L     + L +    + +   S 
Sbjct: 397 AGRGIELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQ----KTLGAATEQLSLLDDSS 452

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  ++ +  IL+L   L  +L       +Y  L+ P++ ++++ME TGI +D D+L
Sbjct: 453 ------LVDQAAAILELAERLSAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDIL 506

Query: 596 KQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           +       + +   E    +L+G+ K NL+SPKQL  +LF   + P   KTKTG      
Sbjct: 507 ETQKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAK 566

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +  +      +P + ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+
Sbjct: 567 EIEQLAAKNPHPFLDHLLAHREYQKMKTTL-EGLIKTVQPDG-RIHTTFNQTVASTGRLS 624

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP++T+ G++IR  FI      +L++ADYSQIE+R++AH++    L + ++ 
Sbjct: 625 STEPNLQNIPVRTEAGRQIRSVFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKE 684

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++
Sbjct: 685 GEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIME 744

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +Y+++     R++GY  T+FGRR +  E+NS     R   ERAA+NAPIQ
Sbjct: 745 SYFERFGGVKKYLDEVVVQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQ 804

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI V ++L+   + +++LLQ+HDELV EV   E     +I+   M+ A  
Sbjct: 805 GTAADIIKVAMIRVDRALQ--GMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSA-- 860

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             I L VPL+V+     +W 
Sbjct: 861 --IELNVPLEVSAGAGKDWD 878


>gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
 gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
          Length = 880

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/991 (32%), Positives = 490/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R      GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLSHLGIHYYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +ET       +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQVETLSKFYDEMGFKQLK------AQLGTGQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + + +  
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVGL-- 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLAKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKVQVLLETEEPMKDQLRSHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ +  E  K L SL + IYDL+G++FN++SPKQLG ILF  +        K
Sbjct: 494 GIKVERETLQGMQVENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLSLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEENFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160]
 gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1]
 gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408]
          Length = 880

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/991 (33%), Positives = 495/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E        +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIKIGLDDLVYKGPQVEALSKFYDEMGFKQLK------AQLGTGQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + + +A 
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVGLAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                    S ++     DL     Q    +  LTK  L                +++K 
Sbjct: 344 -------GDSRQIYVGTSDL----LQQPLFQEFLTKTALKT--------------YDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
 gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
          Length = 866

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/976 (32%), Positives = 503/976 (51%), Gaps = 119/976 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG+S + RAFYA PLLS   +G   NAI GF NML+K+ ++ + +    +    
Sbjct: 2   KRLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKMREDIKPD----YIVCT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+  Y DYKA R K+P  L  Q P+V+   + F I   E+ GFEADDII + 
Sbjct: 57  FDKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AE EG  V I++ DKD +QL +    +  T K     E  + + +++++G+ P + +
Sbjct: 117 AKVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PG+G KTA  L++EYG++                E +LE  +  
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSV----------------EAVLENIDNI 220

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      +G +L   L       + ++   T   +     
Sbjct: 221 ---------------------------SGKKLKENLTEYSEQAIFSKKLATIMTNV---- 249

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+  D++  ++K    + ++         Q  S+ D+ S                     
Sbjct: 250 PIDFDLDEIKSKDDYNKDQLK--ALFTKLQMKSILDKLSNG------------------- 288

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                +   KI N ++ ++  +  + I                 + + I  + L+++  +
Sbjct: 289 EEEEPEIEVKITNIENNKELEELFKNIN----------------EEVYINFTYLNKEKYS 332

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + +++ IFI+           +    ++ +   K+FFENE  LK G++IK     L + G
Sbjct: 333 TIEIDKIFINYDEKNYLIKFKELVKEEDNIKAFKEFFENEDILKNGYSIKNALTALKKLG 392

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I   G   D  L +Y++DS +  + + S+   +LS                 K  + +  
Sbjct: 393 IDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-----------------KFPNVKEG 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  +   + + +L L+L+ K+  EK+  +   ++ P+  V+S ME  G ++++D+L ++S
Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSSMESIGFKVNKDILDELS 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +  + L   ++ I++L+ E+FN++SPKQLG ILF KL  P   KTKTG + T A+ LE+
Sbjct: 496 IKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII+ I  +RQLSKI STY + L + I+       TF +   T TGRL+S EPN
Sbjct: 555 LK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGSIHSTF-NQTVTTTGRLSSTEPN 612

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPIK ++G++IR+ FI       LISADYSQIELR+LAHI+    +   F +  DIH
Sbjct: 613 LQNIPIKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIH 672

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V +E+V+P MR  AK +NF I+YGI  F L+  L I R EA +Y+  YF R
Sbjct: 673 TKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRREAKEYMDIYFER 732

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I EYI K  +  +  GYV T+  RR +  E N+    ++ + ER A+NAPIQG+AAD
Sbjct: 733 YPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAAD 792

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V+  L++  L +K++LQ+HDEL+  V + E+    +++   ME      I L
Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKLLKEEMEN----TIKL 848

Query: 959 RVPLKVNIKVSNNWQE 974
            VPL V++ V  +W +
Sbjct: 849 SVPLDVDVNVGEDWYK 864


>gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4]
 gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4]
          Length = 915

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/976 (28%), Positives = 462/976 (47%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  +RAFYA P  + + H G   NA+ GF +ML  LL++ +     +H A  F
Sbjct: 28  LMLLDGHSLAFRAFYALPAENFKTHSGQATNAVYGFTSMLINLLRDEQ----PTHLAAAF 83

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR +++P+YKA R K P+    Q+ + +    A GIP +  +GFEADD+IAT T
Sbjct: 84  DVSRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVLGALGIPVMAEEGFEADDVIATLT 143

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE  G+ V +++ D+D +QLV+    +    K      +     V +K+ + P +   
Sbjct: 144 TQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGVSELTRFTQTAVEEKYSLTPSQYPD 203

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA   ++EYG+L+ ++ N  +++  K  +++ E      
Sbjct: 204 FAALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLVDNVDKVRG-KVGDSLRENLANVL 262

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           L+R+     T++   +PL                                         P
Sbjct: 263 LNRQ----LTEMVRDVPL--------------------------------------PYTP 280

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L +   + + I    +      ++   F++LS    +           L         
Sbjct: 281 EQLVLAPWDREKIHALFDDLEFKVLRDRLFATLSSSEPEAEEGFEVSGDALA-------- 332

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                          +  W+      G      +  T   F     A+AI+  D +    
Sbjct: 333 ------------PGAVAAWLDAHARTGERHGVTVLGTRTPFAGDVTALAIAASDGECAY- 379

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                                +T T E  + L  +  +    K  H  K+    L   G 
Sbjct: 380 ------------------IAASTATPEDEAALGDWLADASQPKALHEAKWAIHALRGRGW 421

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS--DSQV 538
           ++ G   D  L +Y++  G+ S ++  ++ ++L    +     ++    +D     D++ 
Sbjct: 422 TLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAEA 481

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            E A+ ++  +L L   L  +L   +   +   ++ P+   ++Q+E TGI +D   L  +
Sbjct: 482 AETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATGIAVDSAHLHDL 541

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            +  +  +     + Y++  ++ NL SPKQL  +LF +L  P   KTKTG          
Sbjct: 542 QSRFASQVADAANSAYEVIDKQINLGSPKQLQVVLFEELDMPKTKKTKTGYTTDAEALQG 601

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
             +   +P ++++L  R  +++K T  D L   + +   R+HT ++     TGRL+S +P
Sbjct: 602 LFDKTGHPFLEHLLAHRDATRMKVT-VDGLLKAVAEDG-RIHTTFNQTVAATGRLSSTDP 659

Query: 719 NLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++ D G++IR  F+       L++ADYSQIE+RI+AH++    L + F    D+
Sbjct: 660 NLQNIPVRNDAGREIRDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDL 719

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H  V +  FGV IE+V+P++RR  K +++ + YG+S + LA+QL+I   EA   +  YF 
Sbjct: 720 HSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFA 779

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF G+ +Y+       R++GY  T++GRR +  ++NS     R + ERAA+NAPIQG+AA
Sbjct: 780 RFGGVRDYLHAVVEQARKDGYTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAA 839

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI+V K+L +  L ++MLLQ+HDELV EV   E+   + ++   M  A    I 
Sbjct: 840 DIIKVAMINVQKALAEAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATA----IE 895

Query: 958 LRVPLKVNIKVSNNWQ 973
           L VPL V++    +W 
Sbjct: 896 LSVPLDVSVGTGRSWD 911


>gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 894

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/981 (28%), Positives = 475/981 (48%), Gaps = 103/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            ++  L ++DG S  +RAFYA P  S +  +G   NA+ GF  ML  LLQ  +     +H
Sbjct: 4   TEKPTLLVIDGHSLAFRAFYALPAESFQNREGQHTNAVHGFIAMLINLLQKEK----PTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    +FR   YP+YK  R + P     Q+PL+  A +   IP +  +  EADDI
Sbjct: 60  VGVAFDISRFSFRTREYPEYKGTRGETPVEFTGQVPLLERALKTMNIPTLTKEDHEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIP 175
           +AT      ++GF V ++S D+D +QLV+    L     +      + D E V +K+G+ 
Sbjct: 120 LATLATQGREQGFRVLVVSGDRDAIQLVNDDVTLLYPSTQGVSQLTRYDAEKVFEKYGVQ 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE    + AL G++ DN+ G+  +G KTA   L +YG+L+ +L +   I   K  +N+  
Sbjct: 180 PEMYPDIAALVGETSDNLIGVDKVGPKTAVKWLNQYGSLDAVLEHRDEISG-KVGDNLRA 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    +R+L  L TDV + +  + L  +  + P L    + LEF +L++RV       
Sbjct: 239 QYENVIRNRRLNRLLTDVELPLGPKDLERKPIDEPALREVFQVLEFKQLLDRVLKLEGSG 298

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A+                           + + +   ++  + S   +   PQ+L  E L
Sbjct: 299 AS--------------------------ASSEGTPVGAVEQEPSTAPAAPRPQQLLDEEL 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                                  +W+++          +  +T D    +P+   +++  
Sbjct: 333 A----------------------KWIERQGAASPHGLGLTVETQD---GRPVGFGLASAT 367

Query: 416 QKDDTSFK-VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +     ++     +                         +++  ++   KI  + K    
Sbjct: 368 EAVTLPWQEGRADYAP----------------------FERWLASDA-PKIMSDAKLQVK 404

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            + R G+ ++G   D+++  ++L  G +   +A++  ++L    +++ +   + +    +
Sbjct: 405 AMRRAGLEVQGLAFDVLVAGWLLRPGFTDKTLAALVSRYL---MEDLPEPDANQL----V 457

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +++     +E +   L++   LR  L  E+ L V   ++ P + V+ +ME+ G+  D+ 
Sbjct: 458 PETEALTAPVE-AWYTLRVEHALREVLD-ERTLGVMVDIEMPTLLVLVEMELRGVATDRA 515

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++SA++ + +  L +  +   G++ NL SPKQL ++LF +L  P     KTG     
Sbjct: 516 GLAELSAQLQERITDLAQRAFAEIGKEINLGSPKQLQEVLFDQLGMPKTRANKTGFSTDA 575

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
               +      +P +  +LE R  SK++     +L   I    +R+HT Y    T TGR+
Sbjct: 576 GALADLQASNPHPFLDLLLEHRDASKLR-QIIQTLERGI-GDDERIHTTYVQTGTTTGRI 633

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++T+ G++IR A         L++ADYSQIE+RI+AH++    L + F 
Sbjct: 634 SSNDPNLQNIPVRTEEGRRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFA 693

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+HR V + IFGV    VS +MR   K +++ + YG+S F L+ QLRIP SEA   +
Sbjct: 694 AGEDLHRFVGSRIFGVEPADVSAEMRTKVKAMSYGLAYGLSAFGLSKQLRIPSSEAKQLM 753

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF  + +Y+ +     R  GY ETIFGRR  + ++NSP   +R+  ERAA+NAPI
Sbjct: 754 TDYFARFGAVRDYLRQVVEEARAAGYTETIFGRRRPFPDLNSPNRVLRDNAERAALNAPI 813

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI +   + +  +A++MLLQ+HDEL+ EV   E      I+   M  A 
Sbjct: 814 QGSAADIMKIAMIRIEADMRERDMASRMLLQVHDELILEVAAGEWDALEAIVTDRMAHAA 873

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
               +LRVPL+V +   ++W 
Sbjct: 874 ----DLRVPLEVQVGRGDSWA 890


>gi|332364060|gb|EGJ41837.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49]
          Length = 880

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/991 (32%), Positives = 495/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E        +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQVEALSKFYDEMGFKQLK------AQLGTGQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + + +A 
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHREEIVGLAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                                  + Q   G + L ++ L   ++F          +++K 
Sbjct: 344 ---------------------GDSGQIYVGSSDLLQQPL--FQEFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ +H      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFKHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
 gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
          Length = 875

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/981 (31%), Positives = 482/981 (49%), Gaps = 118/981 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  YRAF+A PLL+    G+  NA+ GF  ML K++Q  +     +H  V 
Sbjct: 2   KKLILIDGNSIAYRAFFALPLLNNDK-GVYTNAVYGFTTMLLKIIQEEK----PTHMLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y +YK  R K P  L  Q PL+R    AF I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHKTYEEYKGGRQKTPPELSEQFPLIRELLDAFNIKRFELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  AEKE + V ++S DKDL+QLVS    +  T K     E  D   + +K+        
Sbjct: 117 SKEAEKEKWEVKVVSGDKDLLQLVSDYVTVVLTKKGITNVESYDEALIDEKY-------- 168

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                            GI       +    G+  + +     + +K   + + ++    
Sbjct: 169 -----------------GIKPHQIIDMKGLMGDSSDNIPGVPGVGEKTALKLLKQFG--- 208

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                         I   L+   ++D +G +L   L         N+       + A I 
Sbjct: 209 -------------TIENVLDS--VDDVSGKKLKEKLSE-------NKEQALMSKELATIF 246

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             V    T +        E    +  K  +F SL DQ     S                 
Sbjct: 247 TEVPYNLTLDELKFGEYDEEKVVSLFKELEFKSLVDQFDTGVSAAE-------------- 292

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                                   + +   SF ++ +  +   + P A+    ++  D+ 
Sbjct: 293 ------------------------KELEELSFDVVEEVKEEHLATPAAM---VVEVLDEN 325

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
             + +     L     +      T  +  L    ++ ++E   K   + K   +VL    
Sbjct: 326 YHQADIAGFALVHEKGRYFIPTETALRSDL--FVEWAKDETKKKWLLDAKRGVVVLGWKD 383

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISD 535
           + + G + D+++ SY+LD   SSHD++ IA +     +        K  K  +P   +  
Sbjct: 384 VLLDGVDFDLLMASYLLDPSHSSHDLSDIATRKGAKSIQADEAVYGKGAKRKVPETDV-- 441

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + EH +  +NVI +L   +  +L   +   +++ L+ P+  V+ +ME  G+++D D L
Sbjct: 442 --LAEHLVRKANVIYELKERMEEELKKNEQFELFKDLEMPLSVVLGRMETEGVKVDIDQL 499

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K +  +++  L  LE++I++ +G  FN++SPKQLG++LF KL  P   KTKTG   +T+ 
Sbjct: 500 KAMGEDLASRLAELEKHIHEHAGVSFNINSPKQLGEVLFEKLGLPVIKKTKTGY--STSA 557

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +    D+ II++IL +RQL K+ STY + L    +K T ++HT ++ A T TGRL+S
Sbjct: 558 DVLEKLAEDHEIIRHILHYRQLGKLNSTYIEGLVKVTHKGTSKIHTRFNQALTQTGRLSS 617

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIPI+ + G+KIR+AFI      K+++ADYSQIELR+LAHIA+   L   F+  
Sbjct: 618 TDPNLQNIPIRLEEGRKIRKAFIPSEEGWKILAADYSQIELRVLAHIAQDEKLITAFKED 677

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +D+H   A ++F V+ E V+  MRR AK +NF I+YGIS + L+  L I R EAA +I+R
Sbjct: 678 MDVHTKTAMDVFHVSEEDVTSMMRRSAKAVNFGIVYGISDYGLSQSLGITRKEAAKFIER 737

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   +P + EY+E+     R+NGYV T+  RR +  E+ S   + R+  ER A+N PIQG
Sbjct: 738 YLASYPNVAEYMERIIEEARENGYVSTLLNRRRYLPELTSRNFNQRSFAERTAMNTPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI ++AM+ +   LE+  L +++LLQ+HDEL+FEVP EE+    +I+   ME A   
Sbjct: 798 TAADIIKKAMVEMALRLEEANLKSRLLLQVHDELIFEVPPEEVDEMMKIVPEVMENA--- 854

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L VPLKV+I   + W + 
Sbjct: 855 -VELAVPLKVDISAGDTWYDA 874


>gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
 gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
          Length = 879

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/980 (27%), Positives = 464/980 (47%), Gaps = 121/980 (12%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + E  L L+DG S  +RAFYA P  +     G   NA+ GF  M   L++  +     +H
Sbjct: 9   KSEETLLLLDGHSLAFRAFYALPAANFSTTGGQHTNAVYGFLGMFLGLVEQEK----PTH 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR   +P+YKA RP  P     Q+ L+R   +  GI  ++ + +EADDI
Sbjct: 65  IAAAFDLSGPTFREAEFPEYKAQRPSTPPEFKGQIELIRETLKTLGITTLDKESYEADDI 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IA+        G    I + D+D +QLV     +  T++      +   E V +K+G+ P
Sbjct: 125 IASLATQGHDAGMNTLICTGDRDSLQLVEDDVTVLYTLRGVSELHRFTPEAVEEKYGVTP 184

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++   L AL GD+ DN+PG+PG+G KTA   +Q+YG+L+ ++ N   I+  K  EN+  Y
Sbjct: 185 KQYPDLAALRGDTSDNMPGVPGVGPKTAQKWIQKYGSLDGVIDNMDDIRG-KVGENLRAY 243

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
               +L+RK+  +  D+ +   L+ L   D +                            
Sbjct: 244 VADVQLARKITEMVRDLDMVDSLDTLKPADIDP--------------------------- 276

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                         N  +AI  ++   TT++   F +L  +    ++   P         
Sbjct: 277 --------------NDALAIFEKLQFGTTLRNRTFRTLGVEFE--DTASIPITEEDLTPG 320

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           KL+ +   N +Y +  +               + +  I  +T+    ++   + +     
Sbjct: 321 KLANWLKKNAAYQEGRDAVA-----------EALAVDIDGETLGLLSAENKGLKL----- 364

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                        DL+   ++D              L+ +  +    K  H+ K     L
Sbjct: 365 -------------DLAALDAKDE-----------QVLRTWLADRGAPKWFHDSKQSFHAL 400

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
            + G ++ G   D  + +Y++     S  +  + Q+       E   S            
Sbjct: 401 RQQGFALDGVEHDTSVAAYLVRPDLRSWSLGDVLQRHAGRDLPENSGS------------ 448

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  +E +  + +L  ++  +L       +Y  ++ P+  ++++ME  GI +D+  L
Sbjct: 449 -------LERAQAVRELVGIMNQELTDAGQAELYFSMEVPLTHILAEMEARGIAVDKAAL 501

Query: 596 KQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           ++++A+    +        +L+  ++ NLSSPKQL  +LF     P   KTKTG     A
Sbjct: 502 EELAADYEAQIADEVTAARELAEDDQLNLSSPKQLQKVLFEDFGLPKTKKTKTGYSTAAA 561

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +  +     ++P + +++  R+  K+KST  D L N I+    R+ T ++     TGRL+
Sbjct: 562 ELEKLQQQTEHPFLNHLMAHREYQKMKST-IDGLINAIDGDG-RIRTTFNQKGAATGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP++T+ G+KIR AF        L++ADYSQIE+R++AH+++   L + +  
Sbjct: 620 SSEPNLQNIPVRTEAGRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRA 679

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL I   EA   ++
Sbjct: 680 GEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYGLSAFGLSQQLGISPGEAKGIME 739

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+  Y++K     ++ GY ET++GRR +  E+ S     R   ERAA+NAPIQ
Sbjct: 740 NYFDRFGGVKRYLDKVVEAAKETGYTETLYGRRRYLPELASSNRVARENAERAALNAPIQ 799

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM+ V ++L +  L +++LLQ+HDELV E+   E+    Q++  +M+ A  
Sbjct: 800 GTAADIIKLAMLRVDRALRNANLKSRVLLQVHDELVLEIAPGELEQIQQLLEENMDSAA- 858

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
              +LRVPL V+     NW 
Sbjct: 859 ---SLRVPLDVSAGHGENWD 875


>gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353]
          Length = 880

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/991 (32%), Positives = 490/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  +EA
Sbjct: 57  PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPTYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  IET            F  L DQ          + + 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQIETLSKF---YDEMGFKQLKDQLGTGQEPVEVKPIE 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             ++ +++   +  + +                       F       +    + + +  
Sbjct: 307 FTKVTEVTADMLAPEQF-----------------------FYFEILGDNYHKEEIVGL-- 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      + F          +++K 
Sbjct: 342 AWGDSRQIYVGTSDLLQQPL---------------------FQDFLSKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 AKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----DQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IY+L+G++FN++SPKQLG ILF  ++ P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYNLAGQEFNINSPKQLGTILFEDMRLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122]
 gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122]
          Length = 905

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/991 (28%), Positives = 460/991 (46%), Gaps = 109/991 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + ++DG+S ++RA++A P      DG P NA  GF +ML K  +++R ++        F
Sbjct: 4   TIAVIDGNSLMHRAYHAVPPTMNAVDGTPTNAAFGFMSMLLKFYEDARPDA----IVCAF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T R E    YKA RP + + L  Q P++     A GIP ++++G+E DDI+ T  
Sbjct: 60  DAGKPTHRIEAMKAYKAQRPPMDDELRVQFPVIEGLLDAMGIPVVKVKGWEGDDILGTIA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
              E  G+   +++ DKD  QLVS  T +  T K          + V++++G+   +   
Sbjct: 120 ARDEALGWNTLLVTGDKDAYQLVSDHTRVVTTRKGITDVVIYGPDEVLERYGVTAAQFPD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L GD+ DNIPG+PGIG KTA  LLQ YG+++ I  N  ++K K+  +N+ +  + A 
Sbjct: 180 FLGLQGDTADNIPGVPGIGPKTATKLLQAYGSMDGIYKNLDKLKGKQL-QNLADNRDQAY 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LSR L ++  D+   + LE           +     A++F+  + RV      +      
Sbjct: 239 LSRDLAVIVQDLDFELDLESAAFPSFAASAVAEAFGAVQFSSHLARVLALIGGEG----- 293

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                    +   A   E+            +L +      ++  P  L  E        
Sbjct: 294 ---------DLPSAASIELPDIDPATGDAARALLEAWLAPRADAVPSMLADEGA------ 338

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDT 420
                    ++  + ++    +     SA    ++D  D        AIA      +D  
Sbjct: 339 --------LVLGVEVVEP--AQASLFESACIAFVSDGHDVVRFENEDAIAAVARIVRDG- 387

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  F  L    +         ++E      +                         
Sbjct: 388 ------CFCTLDAKATMQRAYPPDSSREAFVAPAELLSARA------------------- 422

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  DI L +Y+L S  SS+D A++ +++L            +S+P    +     +
Sbjct: 423 ------FDIGLSAYLLQSNASSYDYATLCEEYL-----------AASLP----AFDDACD 461

Query: 541 HAIENSNVILQLWLLLRPKLIVE--------------KLLHVYERLDKPMIDVVSQMEIT 586
            A  ++ V  +L   L   +  +                   Y  +D P++ V++ ME  
Sbjct: 462 EACAHAFVAPRLARALDGAMACDAEEASPDGTSGRSVGTRSCYYDIDLPLVPVLAVMERV 521

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G +ID D L ++   +++ +  +   +++L+GE+FNL SPKQL  +LF KL  P G KT+
Sbjct: 522 GARIDVDALAEMGRSVAEEIDGIRTRVFELAGEEFNLDSPKQLSVVLFEKLGLPHGKKTQ 581

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
            G   +T           +PI + IL +R+L+K++STY ++LP         VHT ++  
Sbjct: 582 RGY--STDAKTLSKLEDVHPIAREILRYRELAKMESTYIEALPRM-RAGDGLVHTHFNQT 638

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S +PNLQNIP++T+ G++IR  F+        +SADYSQIELR+LAH+++  
Sbjct: 639 VTTTGRLSSSDPNLQNIPVRTEFGRRIRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDE 698

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F +  D H   AA +FGV +E+V+P MR  AK +NF I+YG   F LA  L I  
Sbjct: 699 HLVHAFCSGADFHASTAARVFGVPLEEVTPSMRSRAKAVNFGIVYGQQAFGLAQNLGIGF 758

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA + I RYF  +PG+  +++ T   VR  GY  T+FGRR H  E+ +   + R   ER
Sbjct: 759 KEAQEMIDRYFEAYPGVRAFLDGTVEEVRACGYATTMFGRRRHIPELKAKNPAQRGFGER 818

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N P+QGSAADI + AM  V + L D   A ++++Q+HDEL   VP  E+     ++ 
Sbjct: 819 TAMNHPMQGSAADIVKMAMNEVQRRLVDGGFAAQVMIQVHDELDLSVPVSELDAVGALVR 878

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +M       + L VPL V+++ +  W E +
Sbjct: 879 DAMTNV----VTLEVPLIVDVQSAKTWAEAH 905


>gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
 gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
          Length = 982

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/996 (27%), Positives = 473/996 (47%), Gaps = 51/996 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H
Sbjct: 8   ETRGTLLVVDGHSLAFRAFFALPVENFSTSSGQATNAVWGFATMLAQVIDAEKPD----H 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFRN + P YK  R   PE LL QLPL++    A G+  IE  G+E DD+
Sbjct: 64  LAVAFDVKGGTFRNTMLPQYKGTRDAAPEDLLSQLPLIQSMLDALGVTYIEKPGYEGDDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   + E+  +   ++S D+D  QLV     +          + +  E V  K+ + P
Sbjct: 124 IGTLATMGEQAKYKTLVLSGDRDAFQLVDDWVTVLYPGHHFKDLKHMTPEAVFAKYKVTP 183

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +   L AL G++ DNIPG+PG+G   AA  + +YG+LE I  +A  I  KK  E++ E 
Sbjct: 184 AQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGSLEGICEHADEIGGKK-GESLREN 242

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN-RVATTYDCD 295
            +  +L+RK+  L  D+ + + ++ L     +  ++     +LEF      R+  T++  
Sbjct: 243 LDQVKLNRKVNALVRDIDLGVTVDDLTFGHFDAAKIDELFTSLEFGSRTKTRILKTFNGG 302

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            A            E    A   +      +   Q++  +D  +       P+       
Sbjct: 303 EAP---------KLEQNAKAEAGKERSAIEVSDVQYAGDADTLNAWVEHNLPKPD--ASG 351

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQK------LETIGSASFKIITDTMDAFHSKPIAI 409
             ++    +  +   I ++      +++               K    T+    S  I I
Sbjct: 352 ASVNDESDDTGTQFTIDHSMQCNGIIERSWVINAAGNAKPGKVKANAITLQYGGSALI-I 410

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
            I  +D  DDT  + +      +   +  +T    L   +   L           + H  
Sbjct: 411 EIPAVDSADDTGKQTDAA----TADATDAATDAPRLDPGMRDALNVILAQYAPTLVVHGY 466

Query: 470 KYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           K    +    G+ + +   D  L  Y++     +  +   A ++L    +E  +     +
Sbjct: 467 KEQLHLFASLGVDLPKPLFDTKLAGYLVQPDFHADTLEQAAARFLDIHVEEKTEEATQGL 526

Query: 529 PIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
                      +       ++++ +I +L   L P++   +   + +R++ P+  V+  M
Sbjct: 527 LDLDDGADADADGNQTSTLLQHAAIIAELARALAPQIDQREQFGLLQRMELPVSHVLYGM 586

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G ++D   L  +    + +    +E  +D +G   NL SPKQLG +LF  +      
Sbjct: 587 ESQGAKVDMQRLTSMRDTFAADARQAQEIAWDYAGTTVNLQSPKQLGKVLFEDMGLKPTK 646

Query: 644 KTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           +TKTG + T A  L+++      +   +  +  +L  R+ +K+K   A +L +  N   +
Sbjct: 647 RTKTGGYTTNADALQKLYFTYADDERASGFLGALLRHRETNKLKQIVA-TLIDATNPADE 705

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELR 756
           R+HT +      TGRL+S++PNLQNIP +   G++IR AF+     + L+S DYSQ+ELR
Sbjct: 706 RIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRSAFVPGEGFESLMSCDYSQVELR 765

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           I+AH++    L + F++  D H+ VA+ + GV +++++P  R H K +++ + YG+S + 
Sbjct: 766 IMAHLSGDESLIEAFKSGADFHKYVASLVHGVPVDQITPDQRSHVKAMSYGLAYGLSSYG 825

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL+I  SEA     +YF  F  +H+++E   +  R+ GY ET+FGRR ++  + S  
Sbjct: 826 LAQQLKIRPSEAEALKAKYFATFGKVHDFLESCVSEARKRGYTETMFGRRRYFPALKSTN 885

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            + R+  ERAA+NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+   E
Sbjct: 886 RAARDAAERAALNAPIQGSAADIMKIAMIRARRALAEAGMKSRIILQIHDELVVEIAPGE 945

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
               S ++  +ME A    ++L VPL V+  V  +W
Sbjct: 946 REQVSALVRDAMENA----VHLDVPLDVSTGVGADW 977


>gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702]
          Length = 901

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/978 (28%), Positives = 444/978 (45%), Gaps = 100/978 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  +RAFYA P  +     G   NA+ GF  ML  L++N       +H A
Sbjct: 12  RPTLLLLDGHSLAFRAFYALPAQNFSTTGGQHTNAVYGFLGMLLGLVENEH----PTHIA 67

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR+E +P+YKA RP  P     Q+ L++   QA G+  +  + +EADDIIA
Sbjct: 68  TAFDLSGPTFRSETFPEYKAQRPSTPPEFHGQVELIQETLQALGVTTLTKEAYEADDIIA 127

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T        G  V I + D+D  QLV+    +  T+K     ++     V +K+G+ P +
Sbjct: 128 TLATRGAAAGMRVLICTGDRDSFQLVTEDVTVLYTLKGVSELDRFTPARVEEKYGVTPTQ 187

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL GD+ DN+PG+PG+G KTA   +  YG+LE ++ +   I   K  +N+ ++  
Sbjct: 188 YPDLAALRGDTSDNMPGVPGVGPKTAQKWITGYGSLEGVVEHKDEI-GGKVGQNLRDHLA 246

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
              L                                                     A N
Sbjct: 247 DVLL-----------------------------------------------------ARN 253

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           I  +V D++  E   +   T    D T     F +L   T+  N       +  E  +  
Sbjct: 254 ITEMVRDLDLGEAGQLEALTPGTPDPTASLDMFEALQFGTTLRNRAFRTFGVEFEDGEAA 313

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +              T  +  W+ K                         +      + D
Sbjct: 314 ALTMDAPA-------TGKLATWLTKHAGWKVNRPAGDAAVHRPLAVTVTGVGTPAGGRAD 366

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +     +  D ++H             E  + L+ +  +    K  H+ K +   L+ 
Sbjct: 367 RIALLDPVVGEDGALHAVDIDLTDQDPADE--ATLRAWLADRGAPKWVHDAKAEWHKLNG 424

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G+ + G E D  L +Y+L     + D+A + Q+ + +                      
Sbjct: 425 SGLVLAGVEQDTALAAYLLRPDLRTGDLADVVQRHVGHEITADAPG-------------- 470

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                   +    +L   L P+L     + +Y  L+ P+  V+++ME TGI +D   L+ 
Sbjct: 471 -----AVCAQATAELVAALTPELAEIGAMELYLDLEVPLATVLAKMEATGISVDAASLRD 525

Query: 598 VSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +S E    + +       ++G+   NLSSPKQL  +LF  L+ P   KTKTG      + 
Sbjct: 526 LSDEYGVQIEAEIAEARTIAGDDTLNLSSPKQLQKVLFETLELPKTKKTKTGYSTAAGEL 585

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            +      +P + +++  R+  K+KST  D L   +     R+HT ++     TGRL+S 
Sbjct: 586 EKLAASHPHPFLGHLMAHREYQKMKST-IDGLIEAV-ADDGRIHTTFNQRGAATGRLSSS 643

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++T+ G++IR AF        LI+ADYSQIE+R++AH+++   L + +    
Sbjct: 644 DPNLQNIPVRTEAGRRIRGAFRVGTGYATLITADYSQIEMRVMAHLSQDPGLIEAYRAGE 703

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  V +++F V +E V+P++RR  K +++ ++YG+S F L+ QLRI   EA   +  Y
Sbjct: 704 DLHNYVGSKVFDVPVEHVTPELRRRVKAMSYGLVYGLSAFGLSQQLRISAGEAKQIMDNY 763

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+  Y+++     ++ GY ET++GRR +  E+NS          RAA+NAPIQG+
Sbjct: 764 FERFGGVKRYLDEVVAHAKETGYTETLYGRRRYLPELNSSNRVAAEAAGRAALNAPIQGT 823

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI +RAM+ V        LA+++LLQ+HDELV EV + E    ++I+   M+ A    
Sbjct: 824 AADIIKRAMLRVDAEFTRRDLASRVLLQVHDELVVEVVDGEQDVVTEILREQMDGAA--- 880

Query: 956 INLRVPLKVNIKVSNNWQ 973
            +LRVPL V+  V ++W 
Sbjct: 881 -DLRVPLDVSTGVGSDWD 897


>gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
          Length = 943

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/985 (27%), Positives = 459/985 (46%), Gaps = 71/985 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    L +VDG S  +RAF+A P  +     G   NA+ GF  ML ++L + + +    H
Sbjct: 11  KTRGTLLVVDGHSLAFRAFFALPAENFSTQAGQATNAVWGFATMLSQVLDSEKPD----H 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  +E QG+E DDI
Sbjct: 67  LAVAFDMKGGTFRNEMLPQYKGTREAAPEDLLTQLPLIQKMLTALGVTYVEKQGYEGDDI 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT   + E+ G+   ++S D+D  QL+     +          + +  + V  K+ + P
Sbjct: 127 IATLAAMGERSGYDTLVLSGDRDAFQLIDERVTVLYPGHHFKDLKHMTPQAVEDKYHVGP 186

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +   L AL G++ DNIPG+PG+G   AA  + +YG LE I+ +A  I  KK  E++ E 
Sbjct: 187 AQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEGIIEHADEIGGKK-GESLREN 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +L+RK+  LR DV + I +E L   + +   L     +LEF               
Sbjct: 246 IEQVKLNRKVNALRRDVDLGIGIEDLTFGEVDADALSELFTSLEF-------------GP 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V+   N  +  G A +                        + E T   L +    
Sbjct: 293 RTRSKVLKSFNAGKRAGDAADK---------------------HADDENTSDDLRIPEA- 330

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETI-GSASFKIITDTMDAFHSKPIAIAISTLD 415
                         I +   +  W+       GS +     +  +  H   +  +   L 
Sbjct: 331 ------------VTIADEAALAAWIDSARDGLGSPADNSDDEPRNRAHCADVMASTCALY 378

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +  +        + +     + +  +  +   +   L++F +      + H  K    +
Sbjct: 379 AEGSSKPGNPGCSVLMLEVGGKAAVLEAGVIAGVRPALQRFLDGHADRIVVHGYKEQSHI 438

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L   G+ +   + D  L  Y++     +  +   A  +L           +  + +    
Sbjct: 439 LASLGLDLAEPWFDTKLAGYLVQPDYHADSLEQAASHFLQLQLDNADDVAQGQLDLSGDV 498

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D   Q   + +  ++  L  +L  K+   +   + + ++ P+  V+  ME  G  +D   
Sbjct: 499 DPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQSIELPVSHVLFGMEQVGASVDFMR 558

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++    + +    +E  +  +G + NL SPKQL  +LF  +      KTK+G + T A
Sbjct: 559 LTEMRDRFAIDARDAQETAWQFAGSRVNLQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNA 618

Query: 655 QDLEQIN------CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
             L+ +          N  +  +L  R+ +K+K     SL + +N    R+HT +     
Sbjct: 619 SALQDLAVRSVGNERANGFLTALLRHRETNKLK-QIVQSLIDAVNPDDGRIHTTFEQTVA 677

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A ++    L
Sbjct: 678 ATGRLSSVDPNLQNIPNRNAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDAL 737

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F +  D H+ VA+ ++G+ ++ ++P  R H K +++ + YG+S + LA QL+I   E
Sbjct: 738 IEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTYGLAQQLKISPGE 797

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A     +YF  F  +HEY+E      R+ GY ET+FGRR ++  + SP  +IR+  ER A
Sbjct: 798 ADRLKSQYFATFGKVHEYLESLVAGAREKGYTETMFGRRRYFPGLQSPNRNIRDAAERGA 857

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI    +L   K+ ++++LQIHDELV E+   E    + ++  +
Sbjct: 858 LNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAPGEAEQVTGLVRDA 917

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           ME A    ++L VPL V+  + ++W
Sbjct: 918 MEHA----VDLAVPLDVSTGIGSDW 938


>gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150]
          Length = 880

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/991 (33%), Positives = 494/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LE +              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLEKLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E        +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQVEALSKFYDEMGFKQLK------AQLGTGQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + + +A 
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVGLAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                    S ++     DL     Q    +  LTK  L                +++K 
Sbjct: 344 -------GDSRQIYVSTSDL----LQQPLFQEFLTKTALKT--------------YDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 AKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----DQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IKLAVPLVADENAGQTWYEA 879


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/982 (30%), Positives = 482/982 (49%), Gaps = 90/982 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   + ++D   F +R+FYA P   +   G P   + GF N +  L    +K+  + +
Sbjct: 1   MSK--TVTIIDTFGFFFRSFYALPQHLKNSQGFPTGLLTGFTNFISTL----QKQHDSDY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                D    +FR EI P+YKANR   P+ L  QLP+        G   +   G+EADD+
Sbjct: 55  IVFAIDTKGDSFRKEIDPNYKANRQPPPQELSMQLPIAIEWIDKMGYKTLGFDGYEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IAT    A+++ + V ++S DKDL QL+      L D +K++ +D +   KK+GI P++ 
Sbjct: 115 IATVVRFAKEKSYNVRVVSHDKDLFQLIDDGRVVLVDAIKKQVMDEDECFKKYGISPKQF 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           +  Q++ GDS DNIPG+ GIG   A  LL EY  L+NI  N   IK    ++ +LE+ E 
Sbjct: 175 IDYQSILGDSADNIPGVKGIGKVGAEKLLIEYETLDNIYANIENIKPLGIQKKLLEFKEQ 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S+KLV L   V  +   E   ++  N    ++    L                    
Sbjct: 235 AYMSKKLVTLSCSVFESFDFEEFKMDIENP--FLNIYDELV------------------- 273

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                     E  GI           ++  +      QT+K                   
Sbjct: 274 --------KYEQNGILRALNAKNLVHVEAVKKVEAEAQTNKK------------------ 307

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                N     I + K++++ + +L      +F   T  +D  +   +  +       +D
Sbjct: 308 ----VNFRAVLIDDAKELKRVLSELRDDTIVAFDTETTGLDYENDSLVGFSFCF---NED 360

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV---L 476
            ++ V      L V       G+    ++    +KK F   +   +GHNIK+D       
Sbjct: 361 EAYYVPIAHFYLGV-------GEQISQEDAKIAIKKIF---NSRVVGHNIKFDLHFVIRF 410

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
              G  +  F D M+++++++   S+  +  +++K L +      +S K       ++  
Sbjct: 411 LGEG-ELDIFADSMILAWLINP-ESALSLDKLSEKLLEHKMITFKESVKKGETFASVALE 468

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER---LDKPMIDVVSQMEITGIQIDQD 593
           +   +A E++ + L+L+ L    L  +   H+ E    ++ P I  + +ME+ GI+++  
Sbjct: 469 EACNYAAEDAYITLRLYYLFLEMLKDQGAEHLIEEAKEVEFPFIKTLLKMEMHGIELNSL 528

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+Q  AE   +L  L + IY+L+  +FN++S +QLG++LF +L  P+  KTKTG   +T
Sbjct: 529 FLEQFLAEAKDSLSELTKKIYELASLEFNINSTQQLGNVLFEQLGLPTSKKTKTGY--ST 586

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN-KRTQRVHTFYSLASTMTGR 712
            + +     G++ II  +LE+R++ K+ STY + L       +  R+HT +    T TGR
Sbjct: 587 DEKVLNSLLGEHEIIPYLLEYREVYKLYSTYIEPLLKLSQQDKESRIHTSFVQTGTTTGR 646

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIP +T LG KIR AF++P  KKLI  DYSQIELR+LAH  +   L + F 
Sbjct: 647 LSSKNPNLQNIPTRTALGTKIREAFVAPEGKKLIGIDYSQIELRLLAHFTQDRVLVEAFM 706

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   A  +FG   E+ +P  R  AKT+NF ++YG+   +L+  L+I  +EA + I
Sbjct: 707 QDKDIHMQTAIALFG---EEDAPLKRNVAKTVNFGLLYGMGQKKLSETLKITTAEAKEII 763

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RYF  FP +  Y     +F ++ GYVET+  RR ++D   S     R   ER A+N+  
Sbjct: 764 ERYFSSFPSVKSYFRSIVDFSKEAGYVETLLKRRRYFDY-ESASPMFRAAYEREAVNSIF 822

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+DI + +M  +HK +ED KL  KMLLQIHDEL+FEV   E     +   + M+   
Sbjct: 823 QGSASDIIKLSMNKIHKLIEDEKLNAKMLLQIHDELIFEVDTSEAEILGEKFKNIMQN-- 880

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L +PLK ++K+ + W E
Sbjct: 881 --IMPLNIPLKASMKIGDKWSE 900


>gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08]
          Length = 920

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/976 (29%), Positives = 453/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ S     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 37  LMVLDGHSMAFRAFYALPVESFTTSTGQHTNAVHGFIAMLINLLRNEK----PTHVAVAW 92

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR   Y +YKA R   P     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 93  DLAGGIFRTTEYSEYKAGRAATPPEFPGQIDLIKEVLDALHIAHLSKENYEADDILATLS 152

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  + V +K+ +PP +   
Sbjct: 153 TRATAEGFKSLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPKTVEEKYLVPPARYPE 212

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S DN+PG+PG+G KTA   L  Y  LEN++  A  +K  K  +++ ++ +   
Sbjct: 213 LAALVGESADNLPGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSLRDHLDDVV 271

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + +                  L  L             D  A     
Sbjct: 272 RNRKLNALVRDLDLDVT-----------------LAELARQPW--------DPKATRAVF 306

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ +E D D  ++      +S    K  +  T               
Sbjct: 307 DTLEFRTLWDRVRALASESDADEVVEADDTLEVSGTALKPRTLST--------------- 351

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                             W+    T G     + T   +       A+A+  +D      
Sbjct: 352 ------------------WLSA--TEGRVGVDV-TGRWENGSGDVEAVALGCVDG----- 385

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +    +D                 +  +    K  H+ K     L   G 
Sbjct: 386 ---HAVWFDAAELDPEDE-----------KSFAAWLADNECPKAMHSAKGPVEALAGRGW 431

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R SH      +  L+ T  E  +       +D  +DS  + 
Sbjct: 432 EVAGLTCDTELASYLLHPDRRSHKFDDAVRTHLNLTLGE-GEENSDQAMLDFGNDSSAE- 489

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+L+ + +
Sbjct: 490 -SMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDILEGLRS 548

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +   ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 549 EFDERVTRAQGAAWEAAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDADALAGLY 608

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y      TGRL+S +PNL
Sbjct: 609 EKTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTIAATGRLSSKDPNL 666

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F +  D H 
Sbjct: 667 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHT 726

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 727 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFSRF 786

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 787 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 846

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV ++E     QI+  +M  A      L 
Sbjct: 847 IKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAM----ELS 902

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W E 
Sbjct: 903 VPLTVSIGVGRSWFEA 918


>gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
 gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
          Length = 880

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/991 (33%), Positives = 495/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  IE        +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQIEALSKFYDEMGFKQLK------AQLGAAQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                              I  TK  +  V  L       F+I+ D  +    + +   +
Sbjct: 304 P------------------IEFTKVTEVTVDMLAPEQFFYFEILGD--NYHKEEIVG--L 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      +KF          +++K 
Sbjct: 342 AWGDSRQIYVGTSDLLQQPL---------------------FQKFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILLTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIASDGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17]
 gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17]
          Length = 943

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/985 (27%), Positives = 458/985 (46%), Gaps = 71/985 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    L +VDG S  +RAF+A P  +     G   NA+ GF  ML ++L + + +    H
Sbjct: 11  KTRGTLLVVDGHSLAFRAFFALPAENFSTQAGQATNAVWGFATMLSQVLDSEKPD----H 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  +E QG+E DDI
Sbjct: 67  LAVAFDMKGGTFRNEMLPQYKGTREAAPEDLLTQLPLIQKMLTALGVTYVEKQGYEGDDI 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT   + E+ G+   ++S D+D  QL+     +          + +  + V  K+ + P
Sbjct: 127 IATLAAMGERSGYDTLVLSGDRDAFQLIDERVTVLYPGHHFKDLKHMTPQAVEDKYHVGP 186

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +   L AL G++ DNIPG+PG+G   AA  + +YG LE I+ +A  I  KK  E++ E 
Sbjct: 187 AQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEGIIEHADEIGGKK-GESLREN 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  +L+RK+  LR DV + I +E L   + +   L      LEF               
Sbjct: 246 IEQVKLNRKVNALRRDVDLGIGIEDLTFGEVDADALSELFTNLEF-------------GP 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                V+   N  +  G A +                        + E T   L +    
Sbjct: 293 RTRSKVLKSFNAGKQAGDAADK---------------------HADDEDTSDDLRIPEA- 330

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETI-GSASFKIITDTMDAFHSKPIAIAISTLD 415
                         I +   +  W+       GS +     +  +  H   +  +   L 
Sbjct: 331 ------------VTIADEAALAAWIDSARDGLGSPADNSDDELRNRAHCADVMASTCALY 378

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +  +        + +     + +  +  +   +   L++F +      + H  K    +
Sbjct: 379 AEGSSKPGNPGCSVLMLEVGGKAAVLEAGVIAGVRPALQRFLDGHADRMVVHGYKEQSHI 438

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L   G+ +   + D  L  Y++     +  +   A  +L           +  + +    
Sbjct: 439 LASLGLDLAEPWFDTKLAGYLVQPDYHADSLEQAASHFLQLQLDNADDVAQGQLDLSGDV 498

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D   Q   + +  ++  L  +L  K+   +   + + ++ P+  V+  ME  G  +D   
Sbjct: 499 DPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQSIELPVSHVLFGMEQVGASVDFMR 558

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++    + +    +E  +  +G + NL SPKQL  +LF  +      KTK+G + T A
Sbjct: 559 LTEMRDRFAVDARDAQETAWQFAGSRVNLQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNA 618

Query: 655 QDLEQIN------CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
             L+ +          N  +  +L  R+ +K+K     SL + +N    R+HT +     
Sbjct: 619 SALQDLAVRSVGNERANGFLTALLRHRETNKLK-QIVQSLIDAVNPDDGRIHTTFEQTVA 677

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A ++    L
Sbjct: 678 ATGRLSSVDPNLQNIPNRNAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDAL 737

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F +  D H+ VA+ ++G+ ++ ++P  R H K +++ + YG+S + LA QL+I   E
Sbjct: 738 IEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTYGLAQQLKISPGE 797

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A     +YF  F  +HEY+E      R+ GY ET+FGRR ++  + SP  +IR+  ER A
Sbjct: 798 ADRLKSQYFATFGKVHEYLESLVADAREKGYTETMFGRRRYFPGLQSPNRNIRDAAERGA 857

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NAPIQGSAADI + AMI    +L   K+ ++++LQIHDELV E+   E    + ++  +
Sbjct: 858 LNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAPGEAEQVTGLVRDA 917

Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972
           ME A    ++L VPL V+  + ++W
Sbjct: 918 MEHA----VDLAVPLDVSTGIGSDW 938


>gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 955

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/984 (27%), Positives = 469/984 (47%), Gaps = 59/984 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 11  NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 67  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKSGFEGDDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + ++ K+ + P +
Sbjct: 127 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIVDKYKVTPAQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 187 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 245

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A 
Sbjct: 246 QVKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTRSRVLKTFNTGAK 305

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                        N   A E+  +      ++   +L + TS    EQ  + +   R + 
Sbjct: 306 -----------VSNTSGAGESTNNEQDKQDSNLDLNLPEPTSITAPEQFDEWVKAHRAEV 354

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I + + +   +                                 +  A +     
Sbjct: 355 KVPGEIADFTVSDYGDGSQRHTVC----------------------GDAVGHAWTVAAWG 392

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           D+   +     +      +  +     +T  + +   +F ++EH   I H  K    +L 
Sbjct: 393 DERPGRATAQAV-AVATATSAAIVPLPITDTLRAQFARFLKSEHSRTIVHGYKELLHLLG 451

Query: 478 RYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS-D 535
              + M     D  L  Y+      +  +   A+ +L     E  +  + ++  D    +
Sbjct: 452 AVDLDMDLPMFDTKLAGYLTQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVE 511

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               EH + +  +I  L + L P +   +   +   ++ P+  V+  ME TG ++D   L
Sbjct: 512 EDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRL 571

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             +  + +      +E  ++ +G + NL SPKQL  +LF  +      +TK+G + T A 
Sbjct: 572 VSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAA 631

Query: 656 DLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            L+ +      N   N  +  +L  R+++K+K     +L +  N   +R+HT +      
Sbjct: 632 ALQDLYVKSVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIHTTFEQTVAA 690

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A ++    L 
Sbjct: 691 TGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALI 750

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S + LA QL+I   EA
Sbjct: 751 EAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREA 810

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S     R   ERAA+
Sbjct: 811 EALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAAL 870

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+   E    ++++ ++M
Sbjct: 871 NAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAM 930

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           E A    ++L VPL V+  + ++W
Sbjct: 931 EHA----VDLAVPLDVSCGIGSDW 950


>gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
 gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
          Length = 909

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/981 (27%), Positives = 455/981 (46%), Gaps = 102/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            ++  L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++ +     +H
Sbjct: 18  SEKPTLMLLDGNSLAFRAFYALPAENFKTKSGLTTNAVYGFTAMLINLLRDEQ----PTH 73

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR + YP+YK  R   P+    Q+ + +    A GI  +   GFEADDI
Sbjct: 74  IAAAFDVSRQTFRKDKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEPGFEADDI 133

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE EG  V +++ D+D +QLVS    +    K      +   E V +K+G+ P
Sbjct: 134 IATLATQAENEGHRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVQEKYGLTP 193

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIPG+G KTA   + EYG+L                +++++ 
Sbjct: 194 AQYPDFAALRGDPSDNLPGIPGVGEKTATKWIAEYGSL----------------QSLVDN 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +                          +   G  L +    L    L   +        
Sbjct: 238 VDKV------------------------KGKVGDALRA---HLSSVVLNRELTDLVKDVP 270

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P  L +   +   I    +      ++   F +L+    ++      +   LE   
Sbjct: 271 LAHTPDTLRMQPWDRDQIHRLFDDLEFRVLRDRLFDTLASADPEVEEGFEVRGEALEA-- 328

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                               +  W+ +          ++ + + AF S   A+A+   D 
Sbjct: 329 ------------------GTLAAWLAEHSNGQRFGVAVVGNHL-AFDSDATAVALVASDG 369

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                                       L  E    L  +  +    K  H  K     L
Sbjct: 370 DGRY-------------------IDTTRLDPEDEKALASWLADPDAPKALHEAKLAMHDL 410

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS- 534
              G ++ G   D  L +Y++  G+ S  +  ++ ++L    +     ++    +D    
Sbjct: 411 QGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLSLRYLKRELRADNPEQQQLSLLDDSDA 470

Query: 535 -DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            D Q  +  +  +  ++ L   L  +L       +   ++ P+  V++Q+E  GI +D  
Sbjct: 471 VDDQAVQTLLLRAGAVVDLADALDEELARIDSSALLGSMELPVQRVLAQLETVGIAVDLA 530

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L ++ +E +  +    E  Y + G++ NL SPKQL  +LF +L+ P   +TKTG     
Sbjct: 531 MLSELQSEFAGQIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYTTDA 590

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                  +   +P ++++L  R  +++K T  D L N +     R+HT ++     TGRL
Sbjct: 591 DALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAADG-RIHTTFNQTIAATGRL 648

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIPI+T+ G++IR  F+       L++ADYSQIE+RI+AH++K   L + F 
Sbjct: 649 SSTEPNLQNIPIRTEAGRRIRDGFVVGEGYADLMTADYSQIEMRIMAHLSKDAGLIEAFN 708

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  VA+  F V +++V+P++RR  K +++ + YG+S + L+ QL+I   EA + +
Sbjct: 709 TGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQM 768

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           ++YF RF G+ +Y+    +  R++GY  T+FGRR +  E++S    +R   ERAA+NAPI
Sbjct: 769 EQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPI 828

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI+V +++++  L+++MLLQ+HDEL+FEV + E      ++   M  A 
Sbjct: 829 QGSAADIIKVAMINVDQAIKEAGLSSRMLLQVHDELLFEVADGERDALDALVREHMGSA- 887

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
                L VPL+V++    +W 
Sbjct: 888 ---YRLDVPLEVSVGYGRSWD 905


>gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
 gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
          Length = 889

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/987 (33%), Positives = 486/987 (49%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        S
Sbjct: 14  DKKKLLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PS 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 70  HVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDYLGIRHYELAQYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K G+ 
Sbjct: 130 IIGTLGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLT 189

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE+I                 E
Sbjct: 190 PAQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLESIY----------------E 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 234 NIDGMKASK------------------MKENLINDKEQAFL---------SKTLATIDTQ 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + ++     G  +E        +   Q      Q   ++S   P+ L    +
Sbjct: 267 A----PIEIGLDDLLYSGPDVENLGKFYDEMGFKQLK----QALNVSSTNAPESLDFTIV 318

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +SQ  ++ DS                        F       +      + +A S  D
Sbjct: 319 DHISQDMLSADS-----------------------IFHFELFGENYHTDDLVGLAWSCGD 355

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L +E     K+F E        ++ K  K++
Sbjct: 356 K--------------------LYATDKLELLQE--PIFKEFLE--KTPLKVYDFKKAKVL 391

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R G++++    D  L  Y+L S   +++I++IA  +      +      K  K +IP 
Sbjct: 392 LNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIANLYGQTYLVDDETFYGKGVKKAIP- 449

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI++
Sbjct: 450 ---EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 506

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 507 KKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGK-IHTRYVQDLTQT 625

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 626 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 685

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 686 AFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 745

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 746 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 805

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L +    TKMLLQ+HDE+V EVP+ E+     ++  +M
Sbjct: 806 NSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKALVKQTM 865

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 866 EEA----IQLSVPLIADENEGATWYEA 888


>gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
 gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
          Length = 887

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/975 (28%), Positives = 461/975 (47%), Gaps = 101/975 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  +RAFYA P  + + H G   NA+ GF +ML  LL++ +     +H A  FD
Sbjct: 1   MLLDGHSLAFRAFYALPAENFKTHSGQATNAVYGFTSMLINLLRDEQ----PTHLAAAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR +++P+YKA R K P+    Q+ + +    A GIP +  +GFEADD+IAT T 
Sbjct: 57  VSRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVLGALGIPVMAEEGFEADDVIATLTT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE  G+ V +++ D+D +QLV+    +    K      +     V +K+ + P +    
Sbjct: 117 QAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGVSELTRFTPTAVEEKYSLSPSQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+PGIPG+G KTA   ++EYG+L+ ++ N  +++  K  +++ E      L
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLVDNVDKVRG-KVGDSLRENLANVLL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +R+     T++   +PL                                         P 
Sbjct: 236 NRQ----LTEMVRDVPL--------------------------------------PYTPE 253

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L +   + + I    +      ++   F++LS    +           L          
Sbjct: 254 QLVLAPWDREKIHALFDDLEFKVLRDRLFATLSSSEPEAEEGFEVSGDALA--------- 304

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                         +  W+      G      +  T   F     A+AI+  D +     
Sbjct: 305 -----------PGAVAAWLDAHARTGERHGVTVLGTRTPFAGDVTALAIAASDGECAY-- 351

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                               +T T E  + L  +  +    K  H  K+    L   G +
Sbjct: 352 -----------------IAASTATPEDEAALGDWLADASQPKALHEAKWAIHALRGRGWT 394

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS--DSQVQ 539
           + G   D  L +Y++  G+ S ++  ++ ++L    +     ++    +D     D++  
Sbjct: 395 LGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAEAA 454

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E A+ ++  +L L   L  +L   +   +   ++ P+   ++Q+E TGI +D   L  + 
Sbjct: 455 ETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATGIAVDSAHLHDLQ 514

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           +  +  +     + Y++  ++ NL SPKQL  +LF +L  P   KTKTG           
Sbjct: 515 SRFASQVADAANSAYEVIDKQINLGSPKQLQVVLFEELDMPKTKKTKTGYTTDAEALQGL 574

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
            +   +P ++++L  R  +++K T  D L   + +   R+HT ++     TGRL+S +PN
Sbjct: 575 FDKTGHPFLEHLLAHRDATRMKVT-VDGLLKAVAEDG-RIHTTFNQTVAATGRLSSTDPN 632

Query: 720 LQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++ D G++IR  F+       L++ADYSQIE+RI+AH++    L + F    D+H
Sbjct: 633 LQNIPVRNDAGREIRDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLH 692

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             V +  FGV IE+V+P++RR  K +++ + YG+S + LA+QL+I   EA   +  YF R
Sbjct: 693 SFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFAR 752

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+ +Y+       R++GY  T++GRR +  ++NS     R + ERAA+NAPIQG+AAD
Sbjct: 753 FGGVRDYLHAVVEQARKDGYTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAAD 812

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI+V K+L D  L ++MLLQ+HDELV EV   E+   + ++   M  A    I L
Sbjct: 813 IIKVAMINVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATA----IEL 868

Query: 959 RVPLKVNIKVSNNWQ 973
            VPL V++    +W 
Sbjct: 869 SVPLDVSVGTGRSWD 883


>gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
 gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
          Length = 885

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/982 (33%), Positives = 517/982 (52%), Gaps = 107/982 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K N   ++DGSS  +RAFYA PLL  K  G+  NAI GF  ML   ++  +     SH
Sbjct: 1   MSK-NIFLIIDGSSLFFRAFYALPLLKTKR-GIYTNAIYGFVMMLENAIERVK----PSH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E+Y DYK  R K P  L  Q PLVR   +   I  ++   +EADDI
Sbjct: 55  IVVCFDRKGKTFRSELYKDYKGTRQKTPNELEQQFPLVRDILKYMNIVVLDSPVYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
             T + IA KEG+   +++ DKD  QLV   T +  T K     E ++++ +   +GI P
Sbjct: 115 AGTLSLIASKEGYKSYLLTGDKDYYQLVDDNTNVLMTRKGITELEVVNLQSINDDYGISP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + L+ L GDS DNIPG+PGIG KT   L++EY  +EN+  + S I  K     + E 
Sbjct: 175 QEFIDLKGLMGDSSDNIPGVPGIGPKTGLKLIKEYSTIENLYNHLSEISGK----KLKE- 229

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                 LE   ++     +L + ++ ++    ++ +    + D 
Sbjct: 230 ---------------------NLEENKVQAFMSKKLGTIVRNIDLPVGLSDL-KIKEYDY 267

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N+  +  D                        +F+S+         ++ P+K   E+ +
Sbjct: 268 ENLSKLYRDF-----------------------EFNSI--------LKRLPEKYQKEKTE 296

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           ++S       +         I+  ++ ++T  S +FK I+D        P  IAI  L +
Sbjct: 297 EISDTFFQISN-------DSIEDIIENIKTSKSFAFKFISDGKIYEGIDPFKIAI--LPK 347

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
             +TS                         K+ LS LK  +E++   K+G+++K D +VL
Sbjct: 348 GYNTSVIDY--------------------NKDNLSNLKALWEDDSIEKLGYDLKEDIIVL 387

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
               I ++ +  D M+  Y+L+S  S+++I  +A  + +      +E+L          +
Sbjct: 388 QYNKIDLKNYCHDSMIAEYLLNSTESNYEIDHLASSYFNKAYKSEEELLGKGVKKKKFQE 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I +  +  +     N++ ++  L   K+  E +  +Y  ++ P+I+V++ MEI GI+ D 
Sbjct: 448 IDEGDLNSYFSYILNMVYKISPLQMQKIEAEGMKDLYVNVELPLIEVLANMEIVGIRTDV 507

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L ++  +I + +  LE NIY  + E+FN++SPKQLG ILF K+  P   KTKTG   +
Sbjct: 508 NILNEIDEKIKERINDLEFNIYKDADEQFNINSPKQLGQILFEKMDLPVIKKTKTGY--S 565

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T+ D+ +   G + II NILE+R++SKIK+TY D L + INK+T R+H+ ++   T TGR
Sbjct: 566 TSADVLEKLRGKSLIIDNILEYRKISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGR 625

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++S EPNLQNIPIKT  G+ IR+A +S     L+ +DYSQIELR+LA ++  T +   F 
Sbjct: 626 ISSTEPNLQNIPIKTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFA 685

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIHR  A+E+F    ++VS ++R  AK +NF I+YGIS + L+  L IPR EA  YI
Sbjct: 686 DGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYGISDYGLSQNLNIPRKEAKTYI 745

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             Y   F GI +Y+    +   + GYVET+  RR +  E+ +   +IR+  ER A+N PI
Sbjct: 746 DNYLGHFQGIKKYMNDIIHVGTEKGYVETLLHRRRYIPELKAKNFNIRSFGERIALNTPI 805

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AM+ V+K L+   L  K++LQIHDELV + P+EE+    +I+   M+ A 
Sbjct: 806 QGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEEVAEVCEIMKDVMDNAL 865

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
           +    ++VPL V++K   +  E
Sbjct: 866 I----MKVPLSVSMKTGKSLYE 883


>gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 950

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/984 (27%), Positives = 469/984 (47%), Gaps = 59/984 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 6   NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 62  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKSGFEGDDVIA 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + ++ K+ + P +
Sbjct: 122 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIVDKYKVTPAQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 182 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +  +RV  T++  A 
Sbjct: 241 QVKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTRSRVLKTFNTGAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                        N   A E+  +      ++   +L + TS    EQ  + +   R + 
Sbjct: 301 -----------VSNTSGAGESTNNEQDKQDSNLDLNLPEPTSITAPEQFDEWVKAHRAEV 349

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I + + +   +                                 +  A +     
Sbjct: 350 KVPGEIADFTVSDYGDGSQRHTVC----------------------GDAVGHAWTVAAWG 387

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           D+   +     +      +  +     +T  + +   +F ++EH   I H  K    +L 
Sbjct: 388 DERPGRATAQAV-AVATATSAAIVPLPITDTLRAQFARFLKSEHSRTIVHGYKELLHLLG 446

Query: 478 RYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS-D 535
              + M     D  L  Y+      +  +   A+ +L     E  +  + ++  D    +
Sbjct: 447 AVDLDMDLPMFDTKLAGYLTQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVE 506

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               EH + +  +I  L + L P +   +   +   ++ P+  V+  ME TG ++D   L
Sbjct: 507 EDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRL 566

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             +  + +      +E  ++ +G + NL SPKQL  +LF  +      +TK+G + T A 
Sbjct: 567 VSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAA 626

Query: 656 DLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            L+ +      N   N  +  +L  R+++K+K     +L +  N   +R+HT +      
Sbjct: 627 ALQDLYVKSVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIHTTFEQTVAA 685

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A ++    L 
Sbjct: 686 TGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALI 745

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F +  D H+ VA+ ++ + +++++   R H K +++ + YG+S + LA QL+I   EA
Sbjct: 746 EAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREA 805

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                RYF  F  +H+Y+E      R+ GY ETIFGRR ++  ++S     R   ERAA+
Sbjct: 806 EALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAAL 865

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI   ++L +  + ++++LQIHDELV E+   E    ++++ ++M
Sbjct: 866 NAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAM 925

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           E A    ++L VPL V+  + ++W
Sbjct: 926 EHA----VDLAVPLDVSCGIGSDW 945


>gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
 gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
          Length = 885

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/984 (30%), Positives = 495/984 (50%), Gaps = 113/984 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K++   L+DG+S +YR FY    +S    G+P NAI GF N+L K+    + E    +
Sbjct: 1   MNKKS--ILIDGNSLVYRMFYGVREMSNSK-GVPTNAIYGFVNVLVKI----QNEYKPDY 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD  A TFR++ Y DYK  R K+PE L  Q+ L++      GIP I  +G+EADDI
Sbjct: 54  LAVAFDLSAPTFRHKEYEDYKGGRDKMPEDLQVQMDLLKELLGKMGIPMITKEGYEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIP 175
           I T +   E       II+ DKD  QLV     +  T          +D  ++++++G+ 
Sbjct: 114 IGTLSKQGEARETKTQIITGDKDSFQLVDDYVNVLYTATRSGTQFATVDDAYIMERYGVT 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ ++AL GD  DNIPG+ G+G KTA  L++EY N++                 + E
Sbjct: 174 PRELIDVKALMGDPSDNIPGVAGVGEKTAIKLIKEYHNIDT----------------LYE 217

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + +  +                             +    L+A + +   +R   T   D
Sbjct: 218 HIDDLK----------------------------GKQKEKLEAGKESAFASRFLGTICLD 249

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                P+ L +     K I  E  I+    ++  +F S+ ++    + E           
Sbjct: 250 V----PLDLSLEDLAFKPIFTEESIEM---LRDLEFKSILNKILPDDGE----------- 291

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +    ++  YT I  T ++   + +L                A   K    A    D
Sbjct: 292 -GDAPVAASDIQYTTIGTTTEMITVMNRL----------------ARELKLTVYAYREDD 334

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +    ++     +             K  +     S L +  E +    +GH++K    +
Sbjct: 335 RVWVAAYIGGVYYF----------VEKPAMVSAFFSGLGEIPEADSLQTVGHDLKNLTHI 384

Query: 476 LH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPID 531
            H +  + +    D  + +Y+L+     +D+ ++A K+L     + ++     K+ +  +
Sbjct: 385 YHSQCSVIVNYTFDTYIGAYLLNPSDQRYDLQTVAMKYLGDTIQSEEDFFGRGKTLVRAE 444

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +  +++    ++N  VI +L   L  K+  + +  +++ ++ P++ +++ ME  G ++D
Sbjct: 445 DMDSARLAAFMVKNCEVIHRLEKPLAEKIEADGMTGLFQNIELPLLKIMASMEELGFKVD 504

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
              L+++S E  K + +L   IY+L+ E  FN++S KQLG ILF KLK P   KTKTG +
Sbjct: 505 IHQLEELSVEFEKKIETLTSEIYELAEEDDFNINSTKQLGTILFDKLKLPVVKKTKTG-Y 563

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A+ L+Q+    +PII+ I+++R +SK+ STY   L   ++ +T ++++ ++   T T
Sbjct: 564 STNAEVLDQLVLF-HPIIQKIIDYRMISKLDSTYGKGLIKLVDPKTHKIYSTFNQTVTAT 622

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S +PNLQNIP+KT++G++IR+ F+     + L+ ADYSQIELR+LAH++    L  
Sbjct: 623 GRLSSSDPNLQNIPVKTEMGREIRKVFVPSAGDRVLVDADYSQIELRVLAHLSGDENLID 682

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F  + DIH   A+EIF V ++ VS + R HAK INF +IYG   F L   L I R EA 
Sbjct: 683 TFVKNQDIHTRTASEIFNVPMDAVSREQRSHAKAINFGLIYGKQAFSLGKDLGITRGEAQ 742

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI  YF R+P + EY+E  K   ++ GYV TI+GRR +  EINS    +    ER A+N
Sbjct: 743 SYIDLYFSRYPKVLEYMENIKAEAKEKGYVTTIWGRRRYITEINSRNRMLVQAGERMALN 802

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG+AADI + AMI V+  LE   L +K++LQ+HDEL+ +  + E  T  +++V  ME
Sbjct: 803 TPIQGAAADIIKIAMIKVYDRLEREGLKSKLILQVHDELIIDTLKTEQETVMKLLVEEME 862

Query: 950 KACLPKINLRVPLKVNIKVSNNWQ 973
            A    ++L+VPL V+    ++W 
Sbjct: 863 NA----VDLKVPLTVDAHAGDSWY 882


>gi|332358870|gb|EGJ36692.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056]
          Length = 880

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/991 (32%), Positives = 491/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHYYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E        +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQVEALSKFYDEMGFKQLK------AQLGTGQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + +   +
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVG--L 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 AKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKVQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G+KFN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQKFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKSEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R   YVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKAYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
          Length = 894

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/981 (28%), Positives = 471/981 (48%), Gaps = 103/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            ++  L ++DG S  +RAFYA P  S +  +G   NA+ GF  ML  LLQ  +     +H
Sbjct: 4   TEKPTLLVIDGHSLAFRAFYALPAESFQNREGQHTNAVHGFIAMLINLLQKEK----PTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    +FR   YP YK  R + P     Q+PL+  A +   IP +  +  EADDI
Sbjct: 60  VGVAFDISRFSFRTREYPGYKGTRGETPVEFTGQVPLLERALKTMNIPTLTKEDHEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIP 175
           +AT      ++GF V ++S D+D +QLV+    L     +      + D E V +K+G+ 
Sbjct: 120 LATLATQGREQGFRVLVVSGDRDAIQLVNDDVTLLYPSTQGVSQLTRYDAEKVFEKYGVQ 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P     + AL G++ DN+ G+  +G KTA   L +YG+L+ +L +   I   K  +N+  
Sbjct: 180 PGMYPDIAALVGETSDNLIGVDKVGPKTAVKWLNQYGSLDAVLEHRDEITG-KVGDNLRA 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    +R+L  L TDV + +    L  +  + P L      LEF +L++RV       
Sbjct: 239 QYENVIRNRRLNRLLTDVELPLGPADLERKPIDEPALREVFAVLEFKQLLDRVLKLEGSG 298

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A+                           + + +   ++  + S   +   PQ+L  E L
Sbjct: 299 AS--------------------------ASSEGTPVGAVEQEPSTAPAAPRPQQLLDEEL 332

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                                  +W++           +  +T D    KP+   +++  
Sbjct: 333 A----------------------KWIETQSAASPHGLGLTVETQD---GKPVGFGLASAT 367

Query: 416 QKDDTSFK-VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +     ++     +                         +++  ++   K+  + K    
Sbjct: 368 EAVTLPWQEGRADYAP----------------------FERWLASDA-PKVMSDAKVQVK 404

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            + R G+ ++G   D+++  ++L  G +   +A++  ++L    +++ +   + +    +
Sbjct: 405 AMRRAGLRVQGLAFDVLVAGWLLRPGFTDKSLAALVSRYL---MEDLPEPDANQL----V 457

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +++     +E +   L++   LR  L  E+ L V   ++ P + V+ +ME+ G+  D+ 
Sbjct: 458 PETEALTAPVE-AWYTLRVEHALREVLD-ERTLGVMVDIEMPTLLVLVEMELRGVATDRA 515

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++SA++ + +  L E  +   G++ NL SPKQL ++LF +L  P     KTG     
Sbjct: 516 GLAELSAQLQERITGLAERAFAEIGKEINLGSPKQLQEVLFDQLGMPKTRANKTGFSTDA 575

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
               +      +P +  +LE R  SK++     +L   I    +R+HT Y    T TGR+
Sbjct: 576 GALADLQASNPHPFLDLLLEHRDASKLR-QIIQTLERGI-GDDERIHTTYVQTGTTTGRI 633

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++T+ G++IR A         L++ADYSQIE+RI+AH++    L + FE
Sbjct: 634 SSNDPNLQNIPVRTEEGRRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFE 693

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+HR V + IFGV    VSP MR   K +++ + YG+S F L+ QLRIP SEA   +
Sbjct: 694 VGEDLHRFVGSSIFGVEPADVSPAMRTKVKAMSYGLAYGLSAFGLSKQLRIPSSEAKQLM 753

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF  + +Y+ +     R  GY ETIFGRR  + ++NSP   +R+  ERAA+NAPI
Sbjct: 754 TDYFARFGAVRDYLRQVVEEARAAGYTETIFGRRRPFPDLNSPNRVLRDNAERAALNAPI 813

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI +   + +  +A++MLLQ+HDEL+ EV   E      I+   M  A 
Sbjct: 814 QGSAADIMKIAMIRIEADMRERDMASRMLLQVHDELILEVAPGEWDALQAIVTDRMAHAA 873

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
               +LRVPL+V +   ++W 
Sbjct: 874 ----DLRVPLEVQVGRGDSWA 890


>gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678]
          Length = 880

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/991 (32%), Positives = 490/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN               
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLEN--------------- 221

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 222 -LYENIDQLKASK------------------MKENLIKDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++     G  +E             F  L DQ          + + 
Sbjct: 254 INTQA----PIEIGLDDLVYNGPQVEALSKF---YDEMGFKQLKDQLGTGQEPVEVKPIE 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             ++ +++   +  + +                       F       +    + + +A 
Sbjct: 307 FTKVTEVTADMLAPEQF-----------------------FYFEILGDNYHKEEIVGLAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                    S ++     DL     Q    +  LTK  L                +++K 
Sbjct: 344 -------GDSRQIYVGTSDL----LQQPLFQEFLTKTALKT--------------YDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ +  E  K L SL + IYDL+G++FN++SPKQLG +LF  +  P     K
Sbjct: 494 GIKVERETLQGMQTENEKTLESLTQEIYDLAGQEFNINSPKQLGTVLFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISKDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087]
          Length = 880

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/991 (32%), Positives = 492/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD   +TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKMTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E        +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIKIGLDDLVYKGPQVEALSKFYDEMGFKQLK------AQLGTGQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + +   +
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVG--L 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 AKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G+KFN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQKFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENTGQTWYEA 879


>gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 885

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/982 (33%), Positives = 515/982 (52%), Gaps = 107/982 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K N   ++DGSS  +RAFYA PLL  K  G+  NAI GF  ML   ++  +     SH
Sbjct: 1   MSK-NIFLIIDGSSLFFRAFYALPLLKTKR-GIYTNAIYGFVMMLENAIERVK----PSH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E+Y DYK  R K P  L  Q PLVR   +   I  ++   +EADDI
Sbjct: 55  IVVCFDRKGKTFRSELYKDYKGTRQKTPNELEQQFPLVRDILKYMNIVVLDSPVYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
             T + IA KEG+   +++ DKD  QLV   T +  T K     E ++++ +   +GI P
Sbjct: 115 AGTLSLIASKEGYKSYLLTGDKDYYQLVDDNTNVLMTRKGITELEVVNLQSINDDYGISP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + L+ L GDS DNIPG+PGIG KT   L++EY  +EN+  + S I  K     + E 
Sbjct: 175 QEFIDLKGLMGDSSDNIPGVPGIGPKTGLKLIKEYSTIENLYNHLSEISGK----KLKE- 229

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                 LE   ++     +L + ++ ++    ++ +    + D 
Sbjct: 230 ---------------------NLEENKVQAFMSKKLGTIVRNIDLPVGLSDL-KIKEYDY 267

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N+  +  D                        +F+S+         ++ P+K   E+ +
Sbjct: 268 ENLSKLYRDF-----------------------EFNSI--------LKRLPEKYQKEKTE 296

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +++       +         I   ++ ++   S +FK I+D        P  IAI  L +
Sbjct: 297 EIADTFFQISN-------DSIDDIIENIKASKSFAFKFISDGKIYEGIDPFKIAI--LPK 347

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
             +TS                         K+ LS LK  +E++   K+G+++K D +VL
Sbjct: 348 GYNTSVIDY--------------------NKDNLSNLKALWEDDSIEKLGYDLKEDIIVL 387

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532
               I ++ +  D M+  Y+L+S  S+++I  +A  + +      +E+L          +
Sbjct: 388 QYNKIDLKNYCHDSMIAEYLLNSTESNYEIDHLASSYFNKAYKSEEELLGKGVKKKKFQE 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I +  +  +     N++ ++  L   K+  E +  +Y  ++ P+I+V++ MEI GI+ D 
Sbjct: 448 IDEGDLNSYFSYILNMVYKISPLQMQKIEAEGMKDLYINVELPLIEVLANMEIVGIRTDV 507

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           ++L ++  +I + +  LE NIY  + E+FN++SPKQLG ILF K+  P   KTKTG   +
Sbjct: 508 NILNEIDEKIKERINDLEFNIYKDADEQFNINSPKQLGQILFEKMDLPVIKKTKTGY--S 565

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T+ D+ +   G + II NILE+R++SKIK+TY D L + INK+T R+H+ ++   T TGR
Sbjct: 566 TSADVLEKLRGKSLIIDNILEYRKISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGR 625

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++S EPNLQNIPIKT  G+ IR+A +S     L+ +DYSQIELR+LA ++  T +   F 
Sbjct: 626 ISSTEPNLQNIPIKTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFA 685

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           + LDIHR  A+E+F    ++VS ++R  AK +NF I+YGIS + L+  L IPR EA  YI
Sbjct: 686 DGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYGISDYGLSQNLNIPRKEAKTYI 745

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             Y   F GI +Y+    +   + GYVET+  RR +  E+ +   +IR+  ER A+N PI
Sbjct: 746 DNYLGHFQGIKKYMNDIIHVGTEKGYVETLLHRRRYIPELKAKNFNIRSFGERIALNTPI 805

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AM+ V+K L+   L  K++LQIHDELV + P+EE+    +I+   M+ A 
Sbjct: 806 QGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEEVAEVCEIMKDVMDNAL 865

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
           +    ++VPL V++K   +  E
Sbjct: 866 I----MKVPLSVSMKTGKSLYE 883


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/981 (30%), Positives = 493/981 (50%), Gaps = 107/981 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++DG S +YRAF+A P L+ K +G+  NAI GF  ML K+    ++E   ++
Sbjct: 1   MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKM----KEEIKPNY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD  A TFR++ Y DYKA R K+P  L  Q P+V+       I   EI GFEADD+
Sbjct: 55  IVIAFDKKAPTFRHKEYEDYKAGREKMPSELNEQFPIVKDILNKLAINIFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE +G  V I++ DKD +QL +    +    K     E  D + +I+++ + P
Sbjct: 115 IGTLSEFAEGKGIEVYIVTGDKDALQLATDNVKIVINKKGMSEKEIYDRKRMIEEYEVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++ L GD  DNIPG+PGIG KTA  L                IK+    EN+L+ 
Sbjct: 175 TQFIDVKGLMGDKSDNIPGVPGIGTKTAFKL----------------IKEYGSIENVLDN 218

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E            +   +   L     +     +L +  K +     +  + +  + D 
Sbjct: 219 VENI----------SGKKMKQNLIEYREQAIFSKKLATICKNVPIEIDLEEIKSKENYDI 268

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             +  +                        ++  F +L       ++E+       +R +
Sbjct: 269 EGVRQL-----------------------FESLGFKTLIKNIDNSDNEEESVNNEEKREE 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              Q   +N     I    ++   +  ++         +      F ++ I  +I +  +
Sbjct: 306 TNIQVEFSN-----IETIDELYNLLNNIK-------DTV-----YFQAEYINESIYSKIE 348

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            +    + E     ++V+  ++      L           FE+++  KI H+IK   +VL
Sbjct: 349 FNTIYIRNEEKVYVVNVNKIKNENFHKLLELLKKL-----FEDKNIKKISHDIKNVYVVL 403

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
            +Y I  +    D  + SY+L+  +S + +  I  + LS    +  +  K          
Sbjct: 404 RKYDIDAKNFIFDTKIASYLLEPSKSDYILREIILEKLSINIDDSDEECK---------- 453

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  I+ +  I +++  L+ ++    +  ++  ++ P+  V++ ME  G ++D+D L
Sbjct: 454 -------IKETYCIKEIYEKLQKEIKEANMEELFYNVELPLTKVLASMECEGFKVDKDRL 506

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++  +    +  LE+ I+ L+GE FN+ SPKQLG ILF KL  P   KTKTG + T A+
Sbjct: 507 TEIGEKFKAEIKMLEKEIHKLAGEDFNIKSPKQLGKILFEKLDLPVIKKTKTG-YSTNAE 565

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    +PII  I+++RQ++K+ STY + L  H+     ++H+ ++   T TGRL+S
Sbjct: 566 VLEKLK-DSHPIISKIIDYRQITKLDSTYVEGL-KHVIDEDGKIHSSFNQTVTTTGRLSS 623

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPIK ++G++IR+ F++      + SADYSQIELR+LAHIA    L   F++ 
Sbjct: 624 TEPNLQNIPIKHEMGREIRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHH 683

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A+E+F V +E+V+P MR +AK +NF I+YGI  F L+  + + R EA +YI  
Sbjct: 684 KDIHTITASEVFRVPVEEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDT 743

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+P + +YI+   N   Q+G+V TI  R+ +  EI S    +R+  ER A+N PIQG
Sbjct: 744 YFSRYPNVKKYIDDIINKSEQDGFVTTIMNRKRYIPEIQSRNRIVRSFGERLAMNTPIQG 803

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+ V++ L    L + ++LQ+HDEL+  V ++E+    Q++V  ME     
Sbjct: 804 SAADIIKLAMVHVYEELIKRNLKSTLILQVHDELILNVYKDELEEVKQMVVEKMEGVM-- 861

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
             NL VPL+ ++ +   W E 
Sbjct: 862 --NLLVPLEADVNIGITWYEA 880


>gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b]
 gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b]
          Length = 864

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/979 (31%), Positives = 509/979 (51%), Gaps = 127/979 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L ++DG+S  YRAF+A P +S    G   NA+ GF  ML KL+++ +     +HFAV 
Sbjct: 2   NKLLVLDGNSLTYRAFFALPPMSDAS-GRNTNAVYGFTMMLLKLMEDEQ----PTHFAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ + +YK  R K P  L  Q PLVR   +AFGI  +E+  +EADDII T 
Sbjct: 57  FDASKKTFRHDTFAEYKGGRQKTPGELREQFPLVRDVCRAFGISVLELDQYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +   +     VT+++ DKDL+QL++    +Y T +     EK+      +++ G+ P +M
Sbjct: 117 SK--DPTFDQVTVVTGDKDLLQLINERVTVYLTKRGITEVEKMTETAFKERYDGLQPIQM 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPGIPG+G KTA  L+  YG +                E + E+ + 
Sbjct: 175 IDLKGLMGDKSDNIPGIPGVGEKTALKLIATYGTV----------------EALYEHTD- 217

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                   L+     ++++  +  + +K +  + T    D    
Sbjct: 218 -----------------------ELKGKQKEKVVANEQEAKMSKQLATIYTDVPIDVTMD 254

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E V    + +  K + ++            QF SL  + +  +SE+      +E+ ++ +
Sbjct: 255 ELVFKPYDASVVKTLFMDL-----------QFKSLIGKLADTSSEEP-----VEKAERPT 298

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              ++ D    ++        +++L               D F    I +AI++      
Sbjct: 299 IALVDQDLSRAVL-------MLEQLHD-------------DYFEEDVIGVAIASERGV-- 336

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                              + G  TL ++    +K++ E+E    I  + K   + L R+
Sbjct: 337 -------------------TIGDVTLLED--ERVKEWIEDETKTTICLDAKQTIIQLKRH 375

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDS 536
            +++RG+ED+++  Y+L+       ++SIA  +   L        K  K  +P + +   
Sbjct: 376 QLALRGYEDLLVAGYLLN-LSGGTSLSSIAAHFTYPLEEDETVYGKGAKIKVPEENV--- 431

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               H  E +  I  L+  +  +L   +   +YE L+KP++ V+++ME  GI ++ + L+
Sbjct: 432 -FHAHLAEKAYAIYTLFERVVSELKENEQTELYEALEKPLVSVLAEMEWAGIHVNVETLQ 490

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +  ++ + L +LE  I++L+GE FN++SPKQLG +LF KL  P   KTKTG   +TA D
Sbjct: 491 HMETDLRERLNALEITIHELAGEPFNINSPKQLGVVLFEKLSLPPVKKTKTGY--STAAD 548

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +     +PII+ I+ +R+L K++STY + L   + K   ++HT Y+   T TGRL+S+
Sbjct: 549 VLEKLAPLHPIIEKIMHYRELGKLQSTYVEGLQKVV-KDDGKIHTRYTQTLTQTGRLSSV 607

Query: 717 EPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            PNLQNIPI+ + G++IR+AF +  P   L + DYSQIELRI+AH+++   +   F +  
Sbjct: 608 NPNLQNIPIRLEEGRRIRKAFTASEPGWVLYAVDYSQIELRIMAHMSQDEKMMAAFLHDE 667

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   AA +F V+ E+V+  MRR AK +NF IIYGIS + L+  L I R EA  +I  Y
Sbjct: 668 DIHTSTAANVFKVSAEEVTSLMRRQAKAVNFGIIYGISDYGLSQNLGITRKEAQTFIDTY 727

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F +FPG+  +++      R++G+VET+  RR +  +I+S   ++R   ER AIN PIQG+
Sbjct: 728 FEQFPGVKTFMDAAIERAREHGFVETMLKRRRNIPDIHSRNFNLRGFAERTAINTPIQGT 787

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI ++AMI V  +L   KL +K+LLQ+HDEL+FE P EE+    +++  +ME+     
Sbjct: 788 AADIIKKAMIDVDHALNASKLQSKLLLQVHDELIFEGPTEEMEALEKLVTEAMEQ----T 843

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L VPL+ +  V   W +
Sbjct: 844 VTLDVPLRADGAVGTTWFD 862


>gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505]
 gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505]
          Length = 946

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/992 (29%), Positives = 459/992 (46%), Gaps = 93/992 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  +RAFYA P+ +     G   NA+ GF +M   LL + R     +H AV 
Sbjct: 24  RLLLIDGHSMAFRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLDSER----PTHVAVA 79

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR E Y +YK  R + P+  L Q+ L++   +A G+ A+   G+EADDI+AT 
Sbjct: 80  FDLPGGTFRTEEYAEYKGTRDETPQPFLGQVELIQEVLEAMGVTALTAPGYEADDILATL 139

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              A+ EG  V I S D+D  Q V+    +   VK      ++  + V +++G+ PE+  
Sbjct: 140 AASAQAEGMEVLICSGDRDSFQTVTERCTVLYPVKGVSTLRRMTPQEVEERYGVTPERYP 199

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL G++ DN+PG+PG+G KTAA  L  Y  L+ ++ +A +IK  K  +++ ++ +  
Sbjct: 200 HLAALVGETSDNLPGVPGVGPKTAAKWLNLYDGLDGVIAHADQIKG-KAGQSLRDHLDDV 258

Query: 241 RLSRKLVMLRTDVPITIPL-EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             +R+L  L TD+ + I     L L   +   L    ++LEF  L  R            
Sbjct: 259 VRNRRLNRLLTDLDLGIEPRTDLRLTGADRAGLARVFESLEFRTLHQR------------ 306

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                     ++   F+  SD     ++++      L  L+ +S
Sbjct: 307 -------------------------ALRILSFTDTSDHAEPSDADEVSALNALSDLEIVS 341

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                      + +     +  + LE    A+     D         + +          
Sbjct: 342 -----------LGHDLAAGRLAEWLEAGSPAA---EGDCPRPLGVDVVGV---------L 378

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              + +   + LS  +   +     +  E  + L +   +    K+  + K     L   
Sbjct: 379 KPVEGDAALVSLSDGSRAVAIDLTEILPEDETVLARLLADVERPKLVADAKGSWHALSAR 438

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G+++ G   D  L  Y+    + S+D+ ++ Q+WL      + +           S S  
Sbjct: 439 GLTLDGVIADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVNEGSAGGDGGSGESQSAF 498

Query: 539 QEHAIENSNVILQLW--------------LLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
              A+ +   +                   +L  ++       ++  L+ P+   ++ ME
Sbjct: 499 DLEALTSQEAVPPSHLASARRAAALLPLQAVLDEQMAARDAAGLFTDLEMPVAATLTVME 558

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D  +L     E+   +    E  Y  +G + NLSSPKQL  +LF +LK P   K
Sbjct: 559 DAGIAVDDAVLHARQTELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMPKTRK 618

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTG                +P ++++LE R   K++ T  + L   I     R+HT + 
Sbjct: 619 TKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT-VEGLRKAIQADG-RIHTTFQ 676

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAK 763
                TGRL+S +PNLQNIP + + G +IR AF        L++ADYSQIE+RI+AH++ 
Sbjct: 677 QTIAATGRLSSTDPNLQNIPARHEEGMRIREAFTVGEGYECLMTADYSQIEMRIMAHLSA 736

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L + F +  D+HR VAA + G+ +E V+ Q R H K +++ + YG+S F LA QL I
Sbjct: 737 DQALIEAFRSGEDLHRYVAALVHGIEVEDVTAQQRSHVKAMSYGLAYGLSTFGLARQLGI 796

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
             +EAAD    YF RF  +H+Y+E      R++GY ET+FGRR +  ++ S     R + 
Sbjct: 797 DNAEAADLRNAYFARFGKVHDYLESVVEQARRDGYTETMFGRRRYLPDLTSDNRQRREMA 856

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAA+NAPIQGSAADI ++AMI V  +L +  L +++LLQIHDEL+ EV   E      +
Sbjct: 857 ERAALNAPIQGSAADIVKKAMIDVDSALREQALTSRILLQIHDELLIEVAPGEAEAVENL 916

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +   M  A      L VPL V +     W+E 
Sbjct: 917 LKEQMGGAA----ELSVPLDVAVGRGRTWREA 944


>gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism
           HF4000_APKG10H12]
          Length = 891

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/980 (30%), Positives = 474/980 (48%), Gaps = 100/980 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     LFL+DG++ +YRA++A   L+   DG   NA+ GF  ML KLL + + +     
Sbjct: 1   MPSTPRLFLIDGNNQMYRAYHALHGLT-GPDGRSTNAVYGFITMLRKLLSDQQPDL---- 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR+E+  DYKA R  +PE L+ Q+  V  A  A G+P +   GFEADD+
Sbjct: 56  VAAAFDLKGPTFRHELAADYKATRRPMPEDLVEQVSWVHEACAALGVPVVTHAGFEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKM 179
           I T    A   G  V +++ DKD  QLV     +++   E    D   V++K+G+ P+++
Sbjct: 116 IGTLATQAVAAGLEVVVVTGDKDFFQLVGDRIRVFNPRDEGAWYDDAGVLEKFGVRPDQV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V + AL                          G+  + +     I +K  RE + ++   
Sbjct: 176 VDVLALM-------------------------GDASDNVKGVPGIGEKGARELLADFG-- 208

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                              L+ L+               L   K    +    D    + 
Sbjct: 209 ------------------SLDWLLDHA----------DELPKKKYRTALTEHADNARRSR 240

Query: 300 EPVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQT-SKINSEQTPQKLFLERLQK 357
           E V L  +      +  E E  R     +T  F+  S+     + SE  P    ++    
Sbjct: 241 ELVRLVTDVP----VPYEPERYRYRGADRTRCFTLFSELGFKSLVSEFAPTADSVDT--- 293

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                     Y  + +  +++     L   G     ++T +        + +A ST  + 
Sbjct: 294 ---------DYRMVTDVAELEALAAALRESGRCGLHVLTVSGPPTRGGVVGLAFSTAARS 344

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ L+     D TG       +   L    E+    KIGH++K D L L 
Sbjct: 345 --------ASYVPLA-QDGLDLTGS-LDGGTVFGTLGPMLEDPQVRKIGHDLKRDMLWLA 394

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533
            + I +RG E D M+ SY+LD+ R++  + ++A +   Y       +      +   D++
Sbjct: 395 AHEIRLRGLELDTMIASYLLDATRTTPTVETVALEHAGYQALTADTVRGKGAKAPDFDRL 454

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               V  +A E +++ LQ    LR +L  E+L  +Y  L++P+I V++ +E  GIQ+  D
Sbjct: 455 PPDGVLAYACERADLPLQAAEPLRARLDQERLAELYRELEQPLIPVLADIETAGIQVATD 514

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S  +  +L  L+  IY L+GE+FN++SP+QL  ILF KL  P+  KT   +  +T
Sbjct: 515 ALAVQSRRMDADLSELQSQIYTLAGEEFNINSPRQLSAILFEKLALPTRKKTGKTRAAST 574

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A D+ +     + + + ++EWR + K+K TY D+LP  +   T RVHT ++ A   TGRL
Sbjct: 575 AADVLEELAQHHALPRLVIEWRAVQKLKGTYVDALPQLVRPDTGRVHTSFNQAVAATGRL 634

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S +PNLQNIPI+T LG++IRRAF++     LISADYSQIELR+LAH++  T L Q F  
Sbjct: 635 SSSDPNLQNIPIRTPLGREIRRAFVARDGHVLISADYSQIELRVLAHLSADTALTQAFIR 694

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIH   A  +FG +    + ++RR AK IN++++YG + F L+  + +    A  +I 
Sbjct: 695 NEDIHDKTALHVFGPDSGLDAHELRRRAKIINYALLYGKTAFTLSRDIGVTPQAAQAFID 754

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +P +  +++   +  R++G V T+FGRR    E+ +    IR   ER  +N PIQ
Sbjct: 755 AYFEGYPAVRGFLDGVIDEARESGEVRTMFGRRRLVPELRNRNGQIRAAAERVTVNMPIQ 814

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI +RAMI +  +L     +  M+L +HDEL+ E P +E  + + ++   ME+A  
Sbjct: 815 GTAADILKRAMIDLAGAL---PPSAPMILTVHDELLIEPPRDEADSVADLVRDRMERAA- 870

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
              +L VPL+V++ +  NW 
Sbjct: 871 ---DLTVPLRVDVGIGENWM 887


>gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
 gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
          Length = 907

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/981 (31%), Positives = 482/981 (49%), Gaps = 87/981 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
              + L L+DG +  YR+++A P L     G   +AI GF     +L + +  +      
Sbjct: 4   SSPDTLVLIDGHALAYRSYFALPPLHNSR-GEATHAILGFLRHTLRLARQASNQ-----V 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD P  TFR+  Y  YK+ R + P  L  Q+  +R    A G P +E  GFEADD+I
Sbjct: 58  IVVFDPPGGTFRHAQYGGYKSGRAQTPADLPAQINRIRDLVDALGWPRLEEPGFEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T T +AE +GF V I+++D+D  QL+     +        +  E V+ K+G+   + V 
Sbjct: 118 GTLTKMAEGKGFQVRIVTSDRDAYQLLDEHVRVL-ASDFSLVGPEDVLAKYGVTVGQWVD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--NASRIKQKKRRENILEYAET 239
            +ALTGD+ DNIPG  GIG KTAA LLQEYG L+ +L    A  ++ K  RE +L     
Sbjct: 177 YRALTGDASDNIPGAKGIGPKTAARLLQEYGTLDAVLAAARAGTLEPKGTREKLLASEAD 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              SR+L  + TD+P+ + L                                        
Sbjct: 237 VLFSRELSCMVTDLPLKVDL---------------------------------GAPRGPG 263

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +P  L+    E +  +++ ++   T        +L+       S +T Q   +   +  +
Sbjct: 264 DPARLEALLDELELASLKKDVLGLTR------GTLAPGPDAPGSSETFQLPAI--AEWRT 315

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             P     Y            +      G  +     +   +  ++ +A+  +   +   
Sbjct: 316 PGPDVTWGYVLSREDDLTADLIAAATFDGQVARVAPVEERASHTAEAVAVLDAAAPEGPL 375

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH------NIKYDK 473
                      LS    Q +        E  + L     +E    +G         K   
Sbjct: 376 FGDPPAAAPRKLSKKAQQAAERAAQKAAERRAALFPPIVSEA-EFVGQREVTAAGAKALA 434

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             L   G  +   +D +L++Y+LD   +  ++  +A+++L  T  E              
Sbjct: 435 AHLSVRGTVVEPGDDPLLVAYLLDPANT--NMPIVAERYLRTTWPED------------- 479

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                   A   + +  +L   L P L   +   +YE ++KP+  V+ +ME+ G+++D D
Sbjct: 480 --------AATRAAITYRLLQDLPPHLDEAR-RKLYEEVEKPLSAVLKRMEVRGVRLDSD 530

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L+ +S  ++  + +LE  I+ L+G +F + S  QL  +L+ +L   SG KTK    ++T
Sbjct: 531 YLRGLSEALAGRIATLEAEIHRLAGREFAIRSRDQLETVLYDELGLASGKKTKLTGKRST 590

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A    +    ++PII  +LE+R+L K++ TY D LPN +N RT R+HT +S  +  TGRL
Sbjct: 591 AVSALEPLRNEHPIIPALLEYRELEKLRGTYLDPLPNLVNPRTGRLHTTFSQTTAATGRL 650

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +SL PNLQNIPI+++LG++IR+ FI+     LISADYSQIELR+LA IA    + Q F  
Sbjct: 651 SSLNPNLQNIPIRSELGREIRKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFRE 710

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AA++ G+  + ++P  RR AKT+NF ++YG+S  RL+ +L IP +EAA +I 
Sbjct: 711 GADIHRRTAAQVLGLAEDAITPNQRRAAKTVNFGVLYGMSAHRLSNELGIPYAEAAQFID 770

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF+ +PGI  YIE+T +F R++GYVET++GRR +  E+ S    IR   ER A N PIQ
Sbjct: 771 VYFNTYPGIRRYIERTLDFGREHGYVETLYGRRRYVPELKSQNRVIREAGERLAYNMPIQ 830

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM+ + + L+   L  ++LLQ+HDEL+ E P  +    + +    ME+A  
Sbjct: 831 GTAADIIKIAMVRLDQELDA--LGARLLLQVHDELLIEAPATQADRVAALTREVMEQAA- 887

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
              +L VPL V +    NW +
Sbjct: 888 ---HLSVPLAVEVGTGPNWYD 905


>gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
 gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
          Length = 910

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/982 (26%), Positives = 443/982 (45%), Gaps = 105/982 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P+ +     G P NA+ GF +ML  LL++       +H A
Sbjct: 24  RGRLLLIDGHSMAYRAFFALPVENFSTTSGQPTNAVYGFTSMLINLLRDE----DPTHVA 79

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D    TFR E+Y +YK  R   PE    Q+PL++    A  IP++     EADD+IA
Sbjct: 80  VAWDVARTTFRTEVYAEYKGTRDATPEPFRGQVPLIQEVLTALRIPSMSKDDVEADDVIA 139

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEK 178
           T    AE+ G  V + S D+D  QLVS    +    K      ++    V +K+G+ P  
Sbjct: 140 TLAGQAEQAGLDVLVCSGDRDTFQLVSDAVTVLYPRKGVSDLVRMSPAAVEEKYGLAPAL 199

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DN+PG+PG+G KTAA  +  +G L+ ++  A +I  K           
Sbjct: 200 YPDLAALVGETSDNLPGVPGVGPKTAAKWILAHGGLDGVIAAADQITGKA---------- 249

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                                         G  L + L  +   + +NR+ T  +   A 
Sbjct: 250 ------------------------------GENLRAHLDQVILNRRLNRLLTDVELPIAV 279

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +    +I+                      QF  L D+  +   + T      E   + 
Sbjct: 280 DDLARSEIDREA-----------THEVFDALQFRVLRDRLFEYLPDATAPTDVAELAAE- 327

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                      +++    ++ W+                         + + +    Q+ 
Sbjct: 328 ----------VEVLAPGGLEAWLAG------------------RSGALLGLEVRGSVQQG 359

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                   I          D    +   +++L+    +  +    K  H+ K     L  
Sbjct: 360 SGDAWALAIADADGAALGIDLAEIDPADEKVLAQ---WLADPEAPKAVHDAKPAWHALTG 416

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKSRKSSIPIDKISD 535
            G+ +RG   D  L +Y+    + S+D+A +  ++L     R ++ ++ +  + +D    
Sbjct: 417 RGLEVRGVVMDTALAAYLCHPDQRSYDLADLVVRYLHRELPRTDLDETGQGMLDLDA--- 473

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               + A   +  +++L   L  ++       + E ++ P++  +++ME  GI  D + L
Sbjct: 474 DSGAKSAGARAVAVVELAGPLAEEVADRGAQALLEDVELPLLRTLAEMEHDGIGADVEYL 533

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  E    +       Y+  G + NL SPKQL ++LF  L  P   +TKTG       
Sbjct: 534 RGIEREFDAVVERAALGAYEAIGRQVNLGSPKQLQEVLFDDLGMPKTRRTKTGYTTDADA 593

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             +     ++P ++++L  R+  +++ T  + L   +     R+HT +      TGRL+S
Sbjct: 594 LADLYVKTEHPFLEHLLAHREAIRLRQT-VEGLLRSVAPDG-RIHTTFQQTIAATGRLSS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIPI+T+ G +IR  F+       L++ADYSQIE+RI+AH++    L + F + 
Sbjct: 652 ADPNLQNIPIRTEEGYRIREGFVVGEGYETLLTADYSQIEMRIMAHLSGDEGLIEAFRSG 711

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  V + +FGV  ++V+  MR   K +++ + YG+S F L+ QL I  +EA   +  
Sbjct: 712 EDLHSYVGSRVFGVPTDEVTSAMRSKIKAMSYGLAYGLSAFGLSKQLSIDVAEARTLMDD 771

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+       RQ GY ET+ GRR +  ++ S     R + ER A+NAPIQG
Sbjct: 772 YFDRFGGVRDYLSGVVAQARQVGYTETLMGRRRYLPDLTSDNRQRREMAERMALNAPIQG 831

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + AM+ VH+ + +  +++++LLQ+HDELV EV   E     +++   M  A   
Sbjct: 832 SAADLIKVAMLGVHRQMGEAGMSSRLLLQVHDELVLEVAPGEREALEELVRAQMGAAA-- 889

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL V++    +W+E  
Sbjct: 890 --ELSVPLDVSVGTGRSWREAG 909


>gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330]
          Length = 880

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/991 (32%), Positives = 489/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E             F  L  Q          + + 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQVEALSKF---YDEMGFKQLKAQLGTGQEPVEVKPIE 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             ++ ++++  +  + +                       F       +    + +   +
Sbjct: 307 FTKVTEVTEDMLAPEQF-----------------------FYFEILGDNYHKEEIVG--L 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLIKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISKDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQAWYEA 879


>gi|332364956|gb|EGJ42724.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK355]
          Length = 880

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/991 (32%), Positives = 491/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLAQYEA 116

Query: 118 DDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTVVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E             F  L  Q          + + 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQVENLSKF---YDEMGFKQLKAQLGTAQDPVEVKPIE 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             ++ ++++  +  + +                       F       +    + +  ++
Sbjct: 307 FTKVTEVTEDMLAPEQF-----------------------FYFEILGDNYHKEEIV--SL 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGTSDLLQQPL---------------------FQEFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       ++ EH      V+L+    +  +L     L++   +++P+  V+++MEI 
Sbjct: 438 ALP----EQERLFEHLARKVQVLLETEEPMLEQLRAHDQLNLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I   ++ +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADSK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KATMEAA----IELAVPLVADENAGQTWYEA 879


>gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/976 (29%), Positives = 453/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ S     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVESFTTSTGQHTNAVHGFIAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR   Y +YKA R   P     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGIFRTTEYSEYKAGRAATPPEFPGQIDLIKEVLDALHIAHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  + V +K+ +PP +   
Sbjct: 125 TRATAEGFKSLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPKTVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S DN+PG+PG+G KTA   L  Y  LEN++  A  +K  K  +++ ++ +   
Sbjct: 185 LAALVGESADNLPGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSLRDHLDDVV 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + +                  L  L             D  A     
Sbjct: 244 RNRKLNALVRDLDLDVT-----------------LAELARQPW--------DPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ +E D D  ++      +S    K  +  T               
Sbjct: 279 DTLEFRTLWDRVRALASESDADEVVEADDTLEVSGTALKPRTLST--------------- 323

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                             W+    T G     + T   +       A+A+  +D      
Sbjct: 324 ------------------WLSA--TEGRVGVDV-TGRWENGSGDVEAVALGCVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +    +D                 +  +    K  H+ K     L   G 
Sbjct: 358 ---HAVWFDAAELDPEDE-----------KSFAAWLADNECPKAMHSAKGPVEALAGRGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R SH      +  L+ T  E  +       +D  +DS  + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRSHKFDDAVRTHLNLTLGE-GEENSDQAMLDFGNDSSAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+L+ + +
Sbjct: 462 -SMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDILEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +   ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAQGAAWEAAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y      TGRL+S +PNL
Sbjct: 581 EKTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTIAATGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F +  D H 
Sbjct: 639 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV ++E     QI+  +M  A      L 
Sbjct: 819 IKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAM----ELS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W E 
Sbjct: 875 VPLTVSIGVGRSWFEA 890


>gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
 gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
          Length = 883

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/983 (31%), Positives = 496/983 (50%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  + S                           ++  +L   +   ++ +   T DC + 
Sbjct: 222 DQIKAS---------------------------KIKEYLIRDKNNAILGKKLATIDCTSP 254

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +D+   + K  A +    R    +      LS+               L  +++
Sbjct: 255 ------VDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSE---------------LPDVEE 293

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +     +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 294 IDNKVQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 350

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + LKK  E+++  K   ++K + + L 
Sbjct: 351 Y--------------------VCDDVTLLQE--APLKKILEDKNIAKQVFDLKRNYVGLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R GI++    +DIML SY+ DS  ++ D+  +A  +  +     + I    K       +
Sbjct: 389 RLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ---HSV 445

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++   
Sbjct: 446 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 506 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFDKLKLTPAKKTKTGY--ST 563

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 564 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 623 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA 862

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 863 A----QLDVPLIADANWGHNWYE 881


>gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
 gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
          Length = 890

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/983 (31%), Positives = 496/983 (50%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 9   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 65  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDIL 124

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 125 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 184

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 185 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 228

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  + S                           ++  +L   +   ++ +   T DC + 
Sbjct: 229 DQIKAS---------------------------KIKEYLIRDKNNAILGKKLATIDCTSP 261

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +D+   + K  A +    R    +      LS+               L  +++
Sbjct: 262 ------VDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSE---------------LPDVEE 300

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +     +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 301 IDNKVQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 357

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + LKK  E+++  K   ++K + + L 
Sbjct: 358 Y--------------------VCDDVTLLQE--TPLKKILEDKNIAKQVFDLKRNYVGLQ 395

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R GI++    +DIML SY+ DS  ++ D+  +A  +  +     + I    K       +
Sbjct: 396 RLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ---HSV 452

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++   
Sbjct: 453 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 512

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 513 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTPAKKTKTGY--ST 570

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 571 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 629

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 630 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 689

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 690 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 749

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 750 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 809

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 810 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA 869

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 870 A----QLDVPLIADANWGHNWYE 888


>gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
 gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
          Length = 881

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/991 (32%), Positives = 482/991 (48%), Gaps = 127/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  L++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLIERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K PE    QLP +R      GI   ++  +EA
Sbjct: 57  PTHILVAFDAGKTTFRTEMYADYKGGRAKTPEEFREQLPFIREMLDKLGIRYYDLDQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAENTAVPYDVTIVSGDKDLIQLADDNTIVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GDS DNIPG+  IG KT   LL +YG+L                E
Sbjct: 177 MGITPTQFIDLKALMGDSSDNIPGVTKIGEKTGLKLLLKYGSL----------------E 220

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            I +  +  + S+                  + E+    + I+FL         +R   T
Sbjct: 221 GIYDNIDQMKQSK------------------MKENLINDKDIAFL---------SRTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D  A                 I I  E          Q S   D+            + 
Sbjct: 254 IDTQAP----------------IEIGLEDILYQGPNIKQLSRFYDE------------MG 285

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            ++ ++  +  +  +    I   +  +   + L       F+++ D  +    + +  A 
Sbjct: 286 FKQFKQALEAEVEPEEAADIAFEEVTEVRPEMLSKDDFFYFEMLGD--NYHIDEMVGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
               Q                ++ SQD               K+F EN       ++ K 
Sbjct: 344 GNAQQ----------------IYASQDINLLQQP------AFKEFLENTALK--VYDFKR 379

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L R GI + R   D  L  Y+L S   +++I +IA  +    L+       K  K 
Sbjct: 380 SKVLLSRLGIELSRPAFDSRLAKYLL-STVDNNEIVTIAGLYGKTKLAEDEAVYGKGAKR 438

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   I    +  H      V+++    +   L     L++   +++P+  V+++MEI 
Sbjct: 439 ALPEKAI----LLSHLARKVTVLIETEKPMTDLLRQHDQLNLLYEMEQPLAFVLAKMEIA 494

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  + L  L + IYDL+GE+FN++SPKQLG ILF KL  P+    K
Sbjct: 495 GIKVERETLQTMQAENERILTRLTQEIYDLAGEEFNINSPKQLGGILFEKLGLPTSFTKK 554

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI++ IL++RQ++KI+STY   L + I    + +HT Y   
Sbjct: 555 TKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGK-IHTRYLQD 613

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF+       L+S+DYSQIELR+LAHI+   
Sbjct: 614 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISGDK 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + F +  DIH   A  +F +   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 674 HLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 733

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  YI  YF R+PGI  Y+E      R  GYVET+F RR    +INS   ++R   E
Sbjct: 734 RKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREIPDINSRNFNVRGFAE 793

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI + ++L D    T+MLLQ+HDE+V EVPE E+T    ++
Sbjct: 794 RTAINSPIQGSAADILKIAMIRLGQALIDGNFKTRMLLQVHDEIVLEVPENELTAIKALV 853

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              ME A    I L VPLK +      W E 
Sbjct: 854 KDIMESA----IELSVPLKADESAGKTWYEA 880


>gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 696

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/700 (43%), Positives = 445/700 (63%), Gaps = 7/700 (1%)

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
           EFT L  RVA   D DA+++EP  ++ +   +     + ++        SQ  S +   +
Sbjct: 1   EFTSLTRRVAEATDTDASSVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAA 58

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
           + +   TP+ L   R  +     I+  +Y  I +   ++QW+ +    G  +F   T ++
Sbjct: 59  EPDQGYTPKALAEGRAAQAIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSL 118

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D   ++ +  +++    K   ++                           L+ LK+  E+
Sbjct: 119 DPMQAELVGFSLALAPGK--AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLED 176

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT--- 516
              LKI  N+KYD LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T   
Sbjct: 177 ASILKIAQNMKYDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIA 236

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            K++  S KS++  D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P+
Sbjct: 237 YKDVAGSGKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPL 296

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           +DV+++ME  GI +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K
Sbjct: 297 VDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGK 356

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           +  P  +KTKTGQW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T
Sbjct: 357 MGLPGASKTKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQT 416

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
           +RVHT Y++AST TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR
Sbjct: 417 KRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELR 476

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LAH+A I  L Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F 
Sbjct: 477 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFG 536

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL IPR EA  YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +  
Sbjct: 537 LANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASN 596

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             +R  NERAAINAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E
Sbjct: 597 PQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENE 656

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +     ++   ME A +P ++L VPL+V+ + ++NW E +
Sbjct: 657 VEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNWDEAH 696


>gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
 gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
          Length = 883

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/983 (31%), Positives = 496/983 (50%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  + S                           ++  +L   +   ++ +   T DC + 
Sbjct: 222 EQIKAS---------------------------KIKEYLIRDKNNAILGKKLATIDCTSP 254

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +D+   + K  A +    R    +      LS+               L  +++
Sbjct: 255 ------VDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSE---------------LPDVEE 293

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +     +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 294 IDNKVQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 350

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + LKK  E+++  K   ++K + + L 
Sbjct: 351 Y--------------------VCDDVTLLQE--TPLKKILEDKNIAKQVFDLKRNYVGLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R GI++    +DIML SY+ DS  ++ D+  +A  +  +     + I    K       +
Sbjct: 389 RLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ---HSV 445

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++   
Sbjct: 446 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 506 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTPAKKTKTGY--ST 563

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 564 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 623 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA 862

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 863 A----QLDVPLIADANWGHNWYE 881


>gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
 gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
          Length = 930

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/986 (32%), Positives = 492/986 (49%), Gaps = 73/986 (7%)

Query: 6   HLFLVDGSSFIYRAFYAT--PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            L ++DG  +IYRA++A   P   R     G+P  A+  +  ML +L  + R E      
Sbjct: 3   RLHILDGHGYIYRAYFALAGPGSQRLSTKGGMPTAALFVYAQMLIRLFIDERPER----I 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD P  TFRNE+   YKA R + PE L PQLP     T+A G P I  QG EADD+I
Sbjct: 59  AVVFDPPGRTFRNELDDAYKATRRETPEDLKPQLPYFSKLTEALGWPVICEQGVEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    A  +G+ V + S DKDLMQLV     + D+++    D   V KK+G+PP K+  
Sbjct: 119 ATLVGRARAQGWDVVVYSGDKDLMQLVDEGVTVIDSLRSIVYDAARVEKKFGVPPAKLRD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL--EYAET 239
             AL GD  DN+PG+PG+G KTAA LL  Y +++ IL +   +K  K  E     E  E 
Sbjct: 179 YLALVGDVSDNVPGMPGVGAKTAAKLLGSYDSIDGILAHNEELKG-KMGERFRDPEALER 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              SR+LV LR+DV     L+ L+ +   G +     + LEF  L+ R++        ++
Sbjct: 238 LARSRELVTLRSDVATDAELDALVQQPWEGAQAEELFRELEFETLLERLSAAR----PDV 293

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                D   T  KG     +   D +  +S   + + Q +++  ++      L       
Sbjct: 294 PSPSGDAAATGPKGNDANAD---DGSAASSARPAFAPQPTQVALDEAALAELLAAACAHR 350

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                                          +    +D      +               
Sbjct: 351 -----------------------------RVAVFAESDGARPDRA--------IAIGLAL 373

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            + +   +++ L+ H       + +   E    L+    +     + H++K    +L   
Sbjct: 374 AAGEAAPVYLPLA-HRYLGVPAQWSALPE---ALRALLADPAVEIVAHDVKSLARLLRTL 429

Query: 480 GISMRGF-EDIMLMSYVL--DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
              + G   D ML +Y+L  +      D+A  A      TRK +L S +S I  + +  S
Sbjct: 430 DAPLAGVLGDTMLAAYLLGQEGKLEVEDVAGAAVGAELPTRKSLLGSGRSKIGFEAVDIS 489

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                A   +  +L  W  L  +L        L  +++ L+ P+  +++++E  GI +D 
Sbjct: 490 AAAMRAGGAAAAVLASWPRLGEQLEHAGGDGALRKLHDELELPLALLLAEIEEHGITLDV 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQW 650
             L+ ++ E+   L  +E  +Y+L+GE+FNL SPKQLG +LF KL        +TKTG +
Sbjct: 550 PYLRALADELGGQLAGIERQVYELAGEEFNLGSPKQLGHMLFEKLGLRADKMRRTKTGSY 609

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE +    + II  I+E R+L K+K TY D+LP  +N  T R+HT ++ A   T
Sbjct: 610 STNHEILESM-AESHAIIPPIIEHRELLKLKGTYLDALPPLVNPHTGRIHTSFNQAVAAT 668

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+ D+G++IRRAF++ P K L+S DYSQIELR++AH++    L Q 
Sbjct: 669 GRLSSQDPNLQNIPIRKDIGRRIRRAFVAAPGKTLVSIDYSQIELRVMAHLSGDERLVQA 728

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+N +D+H   AAE+F +  E++ P  RR AK +N+ ++YG S F LA  L I R++AA 
Sbjct: 729 FQNDVDVHTQTAAEVFDLPREEIGPDERRVAKAVNYGLMYGQSEFGLAQSLGISRAQAAH 788

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y++RYF RF  +  Y+++     R  G   T+ GRR    ++++     R   ER A N 
Sbjct: 789 YMERYFERFSTVRAYMDQVVADARAEGAAVTLLGRRRPIPDLDARNQQRRRAAERVAQNT 848

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QGSAADI + AM+ V   L   +    MLL +HDELVFEV  E+  T ++ ++  ME 
Sbjct: 849 PVQGSAADIIKLAMLRVAAHLARGEWDASMLLTVHDELVFEVVPEQAETFAKAMIAEMEG 908

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A      L VPL  +  +++NW + +
Sbjct: 909 AYA----LDVPLVASAGIADNWADAH 930


>gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
 gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
          Length = 883

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/983 (31%), Positives = 494/983 (50%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              + S+                           +  +L   +   ++ +   T DC   
Sbjct: 222 AQVKASK---------------------------IKEYLIRDKNNAILGKKLATIDC--- 251

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              PV L I+  E +   +         +   +F S      +I+++             
Sbjct: 252 -TSPVDLKIDDVELQAQQLTQLRSFYERLGFKKFLSELPDVEEIDNK------------- 297

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 298 ----VQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 350

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + LKK  E+++  K   ++K + + L 
Sbjct: 351 Y--------------------VCDDVTLLQE--APLKKILEDKNIAKQVFDLKRNYVGLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R GI++    +DIML SY+ DS  ++ D+  +A  +  +     + I    K       +
Sbjct: 389 RLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ---HSV 445

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++   
Sbjct: 446 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 506 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTPAKKTKTGY--ST 563

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 564 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 623 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKIMQQA 862

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 863 A----QLDVPLIADANWGHNWYE 881


>gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1]
          Length = 883

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/983 (31%), Positives = 496/983 (50%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  + S                           ++  +L   +   ++ +   T DC + 
Sbjct: 222 DQIKAS---------------------------KIKEYLIRDKNNAILGKKLATIDCTSP 254

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +D+   + K  A +    R    +      LS+               L  +++
Sbjct: 255 ------VDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSE---------------LPDVEE 293

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +     +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 294 IDNKVQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 350

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + LKK  E+++  K   ++K + + L 
Sbjct: 351 Y--------------------VCDDVTLLQE--TPLKKILEDKNIAKQVFDLKRNYVGLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R GI++    +DIML SY+ DS  ++ D+  +A  +  +     + I    K       +
Sbjct: 389 RLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ---HSV 445

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++   
Sbjct: 446 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 506 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTPAKKTKTGY--ST 563

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 564 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 623 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA 862

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 863 A----QLDVPLIADANWGHNWYE 881


>gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152]
 gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152]
          Length = 910

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/979 (29%), Positives = 455/979 (46%), Gaps = 101/979 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P  + +   G   NA+ GF  ML  LL++ +     +H A
Sbjct: 20  RPTLLLLDGHSLAYRAFFALPAENFKTVTGQTTNAVYGFTAMLINLLRDEK----PTHIA 75

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR E YP+YKANR + P+    Q+ L +    A GIP + I GFEADD+IA
Sbjct: 76  AAFDVSRKTFRTEAYPEYKANRSQTPDEFRGQVELTKDVLGALGIPVMAIDGFEADDVIA 135

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T T  A+ EGF + I++ D+D +QLV     +    K      +   E V+ K+G+ P +
Sbjct: 136 TLTTQAKAEGFRILIVTGDRDSIQLVDDDVTVLYPRKGVSDLTRFTPEEVMTKYGLTPNQ 195

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA                           I EY +
Sbjct: 196 YPDYAALRGDPSDNLPGIPGVGEKTAAKW-------------------------IREYGD 230

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                  L  L   V          ++   G  L +    L    L  ++          
Sbjct: 231 -------LATLVDKVD--------TVKGKVGDALRA---HLSSVVLNRQLTEMVKDVPLP 272

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P  L     + + I    +      ++   F +L+    +  S        L      
Sbjct: 273 YTPDQLAQGPWDREKIHRLFDDLEFRVLRDRLFETLAPPQQEAESGFEISGGALA----- 327

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                             +  W+ +    G      +  +         A+AI+  D + 
Sbjct: 328 ---------------VGAVADWLAEHAKAGVRHGVSVVGSGAPARGDVQALAIAAADGES 372

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    +ID++V T +D            + L  +  +    K  H  K     L  
Sbjct: 373 G--------YIDVTVLTPEDE-----------AALAAWLADPAVPKALHEAKSAMHALRG 413

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS-D 535
            G ++ G   D  L +Y++  G+ S ++  ++ ++L    R E   + + S+  D+ + D
Sbjct: 414 RGWTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQLSLLDDEDAVD 473

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++     +  +  +L L   L  +L   +   +   ++ P++ V++ +E  GI +D + L
Sbjct: 474 AETARAEMLRARAVLDLAAALDAELEQIESTALLTDMELPLLGVLATLEEAGIAVDCEQL 533

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  + +  +    E  Y + G++ NL SPKQL  +LF +L  P   +TKTG       
Sbjct: 534 EALQRQFADKVAQAAEAAYGVIGKQINLGSPKQLQVVLFDELDMPKTKRTKTGYTTDADA 593

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                    +P ++++L  R  +++K T  D L   +     R+HT ++     TGRL+S
Sbjct: 594 LESLFEKTQHPFLEHLLAHRDATRLKVT-VDGLLKSV-ADDGRIHTTFNQTIAATGRLSS 651

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPI+TD G+ IR  F+  P   +L++ADYSQIE+RI+AH++    L + F + 
Sbjct: 652 TEPNLQNIPIRTDTGRMIRDTFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNSG 711

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VA++ F + I +VSP++RR  K +++ + YG+S + L+ QL+I  +EA + +  
Sbjct: 712 EDLHSFVASKAFDIPIAEVSPELRRRIKAMSYGLAYGLSSYGLSAQLKISTAEAKEQMDI 771

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF  I +Y+ +     R+ GY ET+FGRR +  +++S     R   ER A+NAPIQG
Sbjct: 772 YFSRFGRIRDYLYEVVEQARKVGYTETLFGRRRYLPDLDSSNRQRREAAERMALNAPIQG 831

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI VH+ + +  L ++MLLQIHDELVFEV E E     Q+    M  A   
Sbjct: 832 TAADIIKVAMIDVHRGIREAGLRSRMLLQIHDELVFEVAEGERDALEQLAREKMSAA--- 888

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            I L VPL V++    +W 
Sbjct: 889 -IALSVPLDVSVGTGRSWD 906


>gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
 gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
          Length = 889

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/987 (33%), Positives = 484/987 (49%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        S
Sbjct: 14  DKKKLLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PS 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 70  HVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K G+ 
Sbjct: 130 IIGTLGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLT 189

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE                 I E
Sbjct: 190 PAQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEG----------------IYE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T +  
Sbjct: 234 NIDGMKASK------------------MKENLINDKEQAFL---------SKTLATIETQ 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + ++     G  +E        +   Q      Q   I+S   P+ L    +
Sbjct: 267 A----PIEIGLDDLVYNGPDVENLGKFYDEMGFKQLK----QALNISSTDAPESLDFAIV 318

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +SQ  ++ DS                        F       +      +  A S  D
Sbjct: 319 DHVSQDMLSADS-----------------------IFHFELFGENYHTDDLVGFAWSCGD 355

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L +E     K+F E        ++ K  K++
Sbjct: 356 K--------------------LYATDKLELLQE--PIFKEFLEKTSLK--VYDFKKAKVL 391

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R G++++    D  L  Y+L S   +++I++IA  +      +      K  K +IP 
Sbjct: 392 LNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIASLYSQTYLVDDETFYGKGVKKAIP- 449

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI++
Sbjct: 450 ---EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 506

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 507 KKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGK-IHTRYVQDLTQT 625

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 626 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 685

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I R +A
Sbjct: 686 AFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGISRKKA 745

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+E+     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 746 KAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 805

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L +    TKMLLQ+HDE+V EVP+ E+     ++  +M
Sbjct: 806 NSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTM 865

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 866 EEA----IQLSVPLIADENEGATWYEA 888


>gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 894

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/984 (27%), Positives = 450/984 (45%), Gaps = 105/984 (10%)

Query: 1   MQKENH-LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M  E+  L L+DG S  YRAFYA P  + +   G   NA+ GF +ML  LL++ +     
Sbjct: 1   MDSEDRRLLLIDGHSMAYRAFYALPKENFQTGTGQHTNAVYGFTSMLINLLRDEQ----P 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV FD    TFR+E + DYKA R   P+    Q+ L++    A  +P +  + +EAD
Sbjct: 57  THLAVAFDVSRKTFRSETFADYKATRGTTPDEFKGQVSLIQDVLAALCVPTLSKEHYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D+IAT T  A  EGF V+I + D+D +QLV+    +    K      +   + V  K+G+
Sbjct: 117 DVIATLTTQATGEGFKVSICTGDRDALQLVTDAVTVLYPTKGVSELTRFTPQAVSDKYGL 176

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+     AL GD  DN+P IPG+G KT    +Q++G+L  ++     +K  K  + + 
Sbjct: 177 SPEQYPDFAALRGDPSDNLPKIPGVGEKTVTKWIQQFGSLAGLVDRVDEVKG-KAGDALR 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                                                       L    L  ++      
Sbjct: 236 AN------------------------------------------LSAVLLNRQLTELVKD 253

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
               + P  L +   +   +    +      ++   FS+LS    ++             
Sbjct: 254 VPLELAPADLAVRQWDRDAVHRLFDDLEFRVLRERLFSTLSAAEPEVEEGFEVSGG---- 309

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                           ++    +  W+ +                 A   + + ++ +  
Sbjct: 310 ----------------VLAPGAVAAWLDE----------------HARDGRRVGLSFTCT 337

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             +         +   ++   +       TLT +    L  +  +  F K  H++K    
Sbjct: 338 WSRGSGDLDGLAL---VTADGAGAFVDARTLTDDDERALSAWLADPAFPKAAHDVKGPLH 394

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            +   G  + G   D  L +Y++  G+ S D+  +  ++L    +         + + + 
Sbjct: 395 AVRDRGWKLAGLSSDTALAAYLVRPGQRSFDLPDLVVRYLQRELRAEQGEDDGQLSLLED 454

Query: 534 SDSQVQEHAIE---NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            +      A      +  + +L   L  +L       +   L+ P++ V+S++E  GI +
Sbjct: 455 EEQTKAGAAASELVRARAVAELADTLDDELARIDSTRLLTELELPLLQVLSELEAAGIAV 514

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D L  + A  +  +    ++ Y + G++ NL SPKQL  +LF +L  P   +TKTG  
Sbjct: 515 DADQLAGLGAHFAARVKQAAQDAYGVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTGYT 574

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
                        ++P ++++LE R  +++K+T  D L   I     R+HT  +     T
Sbjct: 575 TDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT-VDGLVKSI-ADDGRIHTTLNQTIAAT 632

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S EPNLQNIPI+T+ G++IR  F+      +L++ADYSQIE+RI+AH++    L +
Sbjct: 633 GRLSSTEPNLQNIPIRTEEGRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIE 692

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    D+H  VA+  FGV I++V  ++RR  K +++ + YG+S F LA QLRI   +A 
Sbjct: 693 AFRTGEDLHNYVASRAFGVPIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRISTEDAR 752

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + ++ YF RF  + +Y+    +  R++GY  TI GRR +  ++NS     R++ ER A+N
Sbjct: 753 EQMEAYFARFGSVRDYLRDVVDQARKDGYTSTILGRRRYLPDLNSDNRQRRDMAERMALN 812

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM+ VH++L    L ++MLLQ+HDEL+ EV + E     +++   M 
Sbjct: 813 APIQGSAADIIKVAMLDVHEALR--PLRSRMLLQVHDELIIEVADGEREEVERLVRERMG 870

Query: 950 KACLPKINLRVPLKVNIKVSNNWQ 973
            A      L VPL+V++ V  +W 
Sbjct: 871 AAYA----LDVPLEVSVGVGGSWD 890


>gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
 gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 895

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/984 (27%), Positives = 450/984 (45%), Gaps = 105/984 (10%)

Query: 1   MQKENH-LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M  E+  L L+DG S  YRAFYA P  + +   G   NA+ GF +ML  LL++ +     
Sbjct: 2   MDSEDRRLLLIDGHSMAYRAFYALPKENFQTGTGQHTNAVYGFTSMLINLLRDEQ----P 57

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV FD    TFR+E + DYKA R   P+    Q+ L++    A  +P +  + +EAD
Sbjct: 58  THLAVAFDVSRKTFRSETFADYKATRGTTPDEFKGQVSLIQDVLAALCVPTLSKEHYEAD 117

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D+IAT T  A  EGF V+I + D+D +QLV+    +    K      +   + V  K+G+
Sbjct: 118 DVIATLTTQATGEGFKVSICTGDRDALQLVTDAVTVLYPTKGVSELTRFTPQAVSDKYGL 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+     AL GD  DN+P IPG+G KT    +Q++G+L  ++     +K  K  + + 
Sbjct: 178 SPEQYPDFAALRGDPSDNLPKIPGVGEKTVTKWIQQFGSLAGLVDRVDEVKG-KAGDALR 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                                                       L    L  ++      
Sbjct: 237 AN------------------------------------------LSAVLLNRQLTELVKD 254

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
               + P  L +   +   +    +      ++   FS+LS    ++             
Sbjct: 255 VPLELAPADLAVRQWDRDAVHRLFDDLEFRVLRERLFSTLSAAEPEVEEGFEVSGG---- 310

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                           ++    +  W+ +                 A   + + ++ +  
Sbjct: 311 ----------------VLAPGAVAAWLDE----------------HARDGRRVGLSFTCT 338

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             +         +   ++   +       TLT +    L  +  +  F K  H++K    
Sbjct: 339 WSRGSGDLDGLAL---VTADGAGAFVDARTLTDDDERALSAWLADPAFPKAAHDVKGPLH 395

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            +   G  + G   D  L +Y++  G+ S D+  +  ++L    +         + + + 
Sbjct: 396 AVRDRGWKLAGLSSDTALAAYLVRPGQRSFDLPDLVVRYLQRELRAEQGEDDGQLSLLED 455

Query: 534 SDSQVQEHAIE---NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            +      A      +  + +L   L  +L       +   L+ P++ V+S++E  GI +
Sbjct: 456 EEQTKAGAAASELVRARAVAELADTLDDELARIDSTRLLTELELPLLQVLSELEAAGIAV 515

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D L  + A  +  +    ++ Y + G++ NL SPKQL  +LF +L  P   +TKTG  
Sbjct: 516 DADQLAGLGAHFAARVKQAAQDAYGVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTGYT 575

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
                        ++P ++++LE R  +++K+T  D L   I     R+HT  +     T
Sbjct: 576 TDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT-VDGLVKSI-ADDGRIHTTLNQTIAAT 633

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S EPNLQNIPI+T+ G++IR  F+      +L++ADYSQIE+RI+AH++    L +
Sbjct: 634 GRLSSTEPNLQNIPIRTEEGRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIE 693

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    D+H  VA+  FGV I++V  ++RR  K +++ + YG+S F LA QLRI   +A 
Sbjct: 694 AFRTGEDLHNYVASRAFGVPIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRISTEDAR 753

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           + ++ YF RF  + +Y+    +  R++GY  TI GRR +  ++NS     R++ ER A+N
Sbjct: 754 EQMEAYFARFGSVRDYLRDVVDQARKDGYTSTILGRRRYLPDLNSDNRQRRDMAERMALN 813

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AM+ VH++L    L ++MLLQ+HDEL+ EV + E     +++   M 
Sbjct: 814 APIQGSAADIIKVAMLDVHEALR--PLRSRMLLQVHDELIIEVADGEREEVERLVRERMG 871

Query: 950 KACLPKINLRVPLKVNIKVSNNWQ 973
            A      L VPL+V++ V  +W 
Sbjct: 872 AAYA----LDVPLEVSVGVGGSWD 891


>gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
 gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
          Length = 951

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/984 (27%), Positives = 472/984 (47%), Gaps = 58/984 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAFYA P+ +     G   NA+ GF  ML ++++  + +    H  
Sbjct: 6   NETLLVVDGHSLAFRAFYALPVENFSTAAGQATNAVWGFATMLSQVIEAEKPD----HLG 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRN++ P YK  R   PE LL QLPL++   +A G+  IE QG+E DDIIA
Sbjct: 62  VAFDMKGGTFRNDMLPQYKGTREAAPEELLTQLPLIQRMLKALGVTYIEKQGYEGDDIIA 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +  G+   ++S D+D  QLV     +          + +  + ++ K+ + P +
Sbjct: 122 TLATMGDDAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIVDKYKVTPAQ 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + +YG+L+ I  +A  +  KK  E +    +
Sbjct: 182 YPDLAALRGETADNIPGVPGVGDGYAAKWINQYGSLDAICEHADEVTGKK-GEALRANID 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297
             +L+RK+  L  DV + + +E L     +  ++ +  K LEF  +   RV   ++   +
Sbjct: 241 QVKLNRKVNALVRDVDLGVDIEDLTFGSVDVAQIDALFKELEFGPRTKTRVMKIFNGGVS 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                E   D+ + T + + +       ++ Q  Q +   R + 
Sbjct: 301 PAGTAQGAAAAQ----SGGPAEDKLDSGLDTPKITVIE------SAAQFEQWVEAHRHEI 350

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I +   +   N  +                              +  A +     
Sbjct: 351 NVPDDIVDFPVSDYSNEAERH----------------------IMCGDAVGHAWTVTAWG 388

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           D    +       ++  +S  +  +  +   + + L +F + EHF  I H  K    +L 
Sbjct: 389 DARPGRAHVQACAVATASSA-AIIEAPMASSVQTALDRFLKAEHFRTIVHGYKELLHLLS 447

Query: 478 RYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI-SD 535
             G+ M     D  L  Y+      + ++   A+ +L     +  +  +  +  D   ++
Sbjct: 448 AAGLGMALPMFDTKLGGYLAQPDFHADNLNQAAEHFLDIHVVDAEQPAQGVLDFDDEHTE 507

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + E  + +  VI +L + L P +   +   +   ++ P+  V+  ME +G +ID+  L
Sbjct: 508 EDLNERRVHDLAVIRELAVTLGPVIDERRQYWLMRAIELPVSRVLHGMEQSGAKIDRSRL 567

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             +    + +    +E  +  +G + NL SPKQL  +LF  +      +TK G + T A 
Sbjct: 568 TDMRDRFAADARQAQEMAWQYAGGEINLQSPKQLQKVLFVDMGLKPTKRTKNGSYTTNAA 627

Query: 656 DLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            L+ +      N   N  +  +L  R+ +K+K     +L +  NK  +R+HT +      
Sbjct: 628 ALQNLYIHSVDNEQANGFLGALLRHRETNKLK-QIVQTLIDATNKADERIHTTFEQTVAA 686

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLY 768
           TGRL+S++PNLQNIP +  +G++IR  F+     + L+S DYSQ+ELRI+A ++    L 
Sbjct: 687 TGRLSSVDPNLQNIPNRNAVGREIRSVFVPGEGYEALMSCDYSQVELRIMADLSGDEALI 746

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F +  D H+ VA+ ++GV +++++   R H K +++ + YG+S + LA QL I + EA
Sbjct: 747 EAFRSGADFHKYVASMVYGVPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLNIAQREA 806

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
                RYF  F  +H+Y+E      R+ GY ETIFGRR ++  + S     R+  ERAA+
Sbjct: 807 EALKNRYFDTFGKVHDYLESLVATAREKGYTETIFGRRRYFPALRSTNRMARDAAERAAL 866

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAADI + AMI   ++L++  + ++++LQIHDELV E+   E    +++I ++M
Sbjct: 867 NAPIQGSAADIMKIAMIRAGQALDEAGVKSRIILQIHDELVVEIAPGESEQVTELIRNAM 926

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           E A    ++L VPL V+  + ++W
Sbjct: 927 EHA----VDLAVPLDVSCGIGSDW 946


>gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
 gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
          Length = 883

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/983 (31%), Positives = 496/983 (50%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  + S                           ++  +L   +   ++ +   T DC + 
Sbjct: 222 DQIKAS---------------------------KIKEYLIRDKNNAILGKKLATIDCTSP 254

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +D+   + K  A +    R    +      LS+               L  +++
Sbjct: 255 ------VDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSE---------------LPDVEE 293

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +     +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 294 IDNKVQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 350

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + LKK  E+++  K   ++K + + L 
Sbjct: 351 Y--------------------VCDDVTLLQE--TPLKKILEDKNIAKQVFDLKRNYVGLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R GI++    +DIML SY+ DS  ++ D+  +A  +  +     + I    K       +
Sbjct: 389 RLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ---HSV 445

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++   
Sbjct: 446 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 506 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTPAKKTKTGY--ST 563

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 564 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 623 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQA 862

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 863 A----QLDVPLIADANWGHNWYE 881


>gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36]
 gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains,
           putative [Streptococcus sanguinis SK36]
          Length = 880

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/991 (32%), Positives = 491/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHYYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN               
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLEN--------------- 221

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 222 -LYENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E        +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQVEALSKFYDEMGFKQLK------AQLGTGQDPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + +   +
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEVVG--L 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          ++IK 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLTKTALK--TYDIKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++ +IA+ +    L    +   K  K 
Sbjct: 379 AKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELVTIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ +H      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMETA----IELAVPLVADENAGQTWYEA 879


>gi|332364041|gb|EGJ41819.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059]
          Length = 880

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/991 (32%), Positives = 490/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LEN+              
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  +  + S+                  + E+    +  +FL         ++   T
Sbjct: 224 ---ENIDQLKASK------------------MKENLINDKDKAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E        +   Q        +++ + Q P ++ 
Sbjct: 254 INTRA----PIEIGLDDLVYKGPQVEALSKFYDEMGFKQLK------AQLGTSQEPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + + +  
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVGL-- 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++ +IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELVTIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ +H      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISKDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIETYFERFPGIKNYKETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFNSRMLLQVHDEIVLEVPNDELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 900

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/977 (29%), Positives = 478/977 (48%), Gaps = 100/977 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA++A   LS    G P +A  G   ML KL+   +     ++  V  D
Sbjct: 17  LYLVDLSGYVFRAYHAISPLS-SPSGEPTHATYGTVAMLTKLVDERK----PAYLGVAMD 71

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+E+ P YKA+RP  P  L  Q+   R   +A+ IP    +G EADD++A    
Sbjct: 72  SPGKTFRDELDPRYKAHRPPPPPDLGVQMSRCREIVEAYRIPIFIQEGLEADDLVAVAVA 131

Query: 127 IAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            A++ G  V I S+DKDLMQLV      L+D ++++      V+ K+G+PPE++  L AL
Sbjct: 132 RAKERGLRVVIASSDKDLMQLVDGEQVMLWDAMRDKVYGHPEVVAKFGVPPEQVRDLLAL 191

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD+ DN   +PG+                        +  K   E + ++         
Sbjct: 192 VGDTSDN---VPGV----------------------PGVGLKTAAELLAQFG-------- 218

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
                                     L +  + +   K   R+  +   + A+       
Sbjct: 219 -------------------------SLSAIYERIGEVK-KPRIRESLQQNEADARLSQKL 252

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
           +       ++++ E  R     T +   L  +                +  +  +     
Sbjct: 253 VTLDGGAPVSLDLETLRYGGADTGRLRELFTELG---------FSRFLKAVRAPEPTARA 303

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  +   ++++ + +     G  +  ++  + +   +    +A++            +
Sbjct: 304 ATYRVLTTREELEGFARSARAAGRLALDVLATSREPMSAHVCGVALACEPG--------Q 355

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
            +++ L                +I + +     +    K+GH++K+ +++L R+ I + G
Sbjct: 356 AVYVPLGHRYL--GAPAQLSMSDIDAVMGPLLADPELPKVGHDVKFCEVILLRHRIGLVG 413

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKS--RKSSIPIDKISDSQVQ 539
              D ML SY+LD     + +  +A++ L     T  E+      ++   +D+I   +  
Sbjct: 414 VSFDTMLASYLLDP-EGKNQLHELAERELGAKMQTLDEVAPKRRGQAQRALDEIELGEAS 472

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +    ++V L L   LRP+L  EKL  +  +++ P+  V+++ME+TG+ +D   L Q+ 
Sbjct: 473 SYGAAFADVALSLTDRLRPRLRAEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLG 532

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A+++  L +LE+   ++ G   NL+SPKQL  +LF +LK  S  KTKTG+  +T  D+ +
Sbjct: 533 AQMTTELAALEQKAREIVGHDINLASPKQLEAVLFDELKLRSQRKTKTGR--STDADVLE 590

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++P    +LE R ++K+K TY D+LP  ++  T R+HT +  A   TGRL+S +PN
Sbjct: 591 ALSEEHPFPGVVLEHRAIAKLKGTYVDALPRLVHPGTGRIHTRWGQAVAATGRLSSQDPN 650

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T+LG+ IRRAF++PP   ++SADYSQIELR+LAH++K   L   F    D+H 
Sbjct: 651 LQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDVHV 710

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A EIFGV+   V+ +MRR +KTINF +IYG+    LA +L I R+EAA +I  YF R+
Sbjct: 711 RTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESALAKRLDISRAEAARFIDAYFARY 770

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+HE++E T    +++  V T+ GRR    ++ S     R   ER A N PIQG+AAD+
Sbjct: 771 RGVHEFMEGTMAEAKRSESVRTLLGRRRLLPDLRSSDRMRRAQAERIAQNTPIQGTAADL 830

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ V + +       +M+L +HDEL FEVP E +  A   +  +ME        L 
Sbjct: 831 LKLAMVRVPRPVV---PGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESV----FPLD 883

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V++     W + +
Sbjct: 884 VPLVVDVGHGPTWADAH 900


>gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266]
          Length = 931

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 457/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 48  LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 103

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 104 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 163

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 164 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 223

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 224 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 282

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                              D  A     
Sbjct: 283 RNRKLNALVRDLDLDLTLAELARHPW-------------------------DPKATRAVF 317

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 318 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 352

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 353 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 396

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K+ H+ K     L   G 
Sbjct: 397 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKVMHSAKGPVEALAERGW 442

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 443 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 500

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 501 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 559

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 560 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 619

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 620 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 677

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 678 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 737

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 738 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 797

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 798 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 857

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 858 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 913

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 914 VPLTVSIGVGRSWFDA 929


>gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 937

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1006 (28%), Positives = 487/1006 (48%), Gaps = 110/1006 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    L ++DG S  +RAFYA P  +   D G   NA+ GF  ML  +++  R     +H
Sbjct: 8   EAPQRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQR----PTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+E Y +YKA R + P     Q+ L     +A GIP +  +G+EADDI
Sbjct: 64  VAVAFDLSGPTFRSEEYGEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTFEGYEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP 176
           +AT +  AE+ G+   ++S D+D  QL+S  T +    K       +D + V+ K+G+ P
Sbjct: 124 VATLSARAEEAGWEAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAP 183

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +   L AL G++ DN+PG+PG+G   AA  L++YG+L+ +L +A  I  KK  E + E+
Sbjct: 184 AQYPELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKK-GEALREH 242

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  R +R+L  L  D+ + I LE + LE      +     AL+F ++  RV   +    
Sbjct: 243 LEDVRRNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERVFEVFGER- 301

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                                + +       E  P+        
Sbjct: 302 -------------------------------------VGEDAPPPEVEAAPE-------- 316

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +T+    +D++ ++  +  T+      +    +      P+        
Sbjct: 317 -----------FTEATTAEDVRAFLAAEAGTLLGVHVDVEGPALLPRRKVPV-------P 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
               T   V  +     +H S D    +T    +++ ++         K  H++K     
Sbjct: 359 GTFGTPVGVALVGEHAGLHVSLDG---DTPDPALVAAVRDALGEGGLAKAVHDLKRTLKA 415

Query: 476 LHR--YGISMRG-------FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILK 522
           L     G  +          +D++L +Y++   R    + ++A+  L       R+   +
Sbjct: 416 LTAPTEGDGLGPDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLTAPREPAQQ 475

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL----RPKLIVEKLLHVYERLDKPMID 578
             + +  +D    +  +     ++     +   L     P+++      + + L+ P+  
Sbjct: 476 RAQGTFDLDGGQAAAERAARAADAVRAAWVVRRLSTQFTPQVLDRGAQRLLQELEIPLSR 535

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY-----DLSGEKFNLSSPKQLGDIL 633
           ++++ME+TGI +D D L  +  + +    + +E+ +     +  G + NL SPKQL ++L
Sbjct: 536 LLARMELTGIAVDVDALTGLREDFTAAADAAKESAWASVAEETGGMQVNLGSPKQLQEVL 595

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F +L  P   KTKTG         + +    +P ++N++  R  +K++ T  + L   + 
Sbjct: 596 FERLNMPRTRKTKTGYSTDVDSLQDLLEQTQHPFLENLMAHRDATKLRQT-VEGLLETVA 654

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP--TK--KLISAD 749
               R+HT YS  +  TGRL+SL PNLQNIP++T+ G++IR  F++     +   L+SAD
Sbjct: 655 PDG-RIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGRRIRGVFVADEVAGEQAVLLSAD 713

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE+RI+AH+++   L Q F    D+H  V +++FGV+ ++V+ + R   K +++ + 
Sbjct: 714 YSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLA 773

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+S F L+ QL+I   EA   +K YF RF G+ +Y+       RQ+GY  TI GRR + 
Sbjct: 774 YGLSSFGLSKQLKISVDEARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYL 833

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +++S    +R++ ERAA+NAPIQGSAADI +RAM+ V   LE+H LA+++LLQ+HDEL+
Sbjct: 834 PDLSSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELI 893

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            EVP  E+  ++ ++   M +A      L VPL V++    +W + 
Sbjct: 894 LEVPAAELEQSTALLKERMGRAA----ELSVPLDVHVGQGRSWHDA 935


>gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/975 (29%), Positives = 452/975 (46%), Gaps = 101/975 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            ++DG S  +RAFYA P+ S     G   NA+ GF  ML  LL+N +     +H AV +D
Sbjct: 1   MVLDGHSMAFRAFYALPVESFTTSTGQHTNAVHGFIAMLINLLRNEK----PTHVAVAWD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR   Y +YKA R   P     Q+ L++    A  I  +  + +EADDI+AT + 
Sbjct: 57  LAGGIFRTTEYSEYKAGRAATPPEFPGQIDLIKEVLDALHIAHLSKENYEADDILATLST 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVCL 182
            A  EGF   ++S D+D MQLV+    +    K      ++  + V +K+ +PP +   L
Sbjct: 117 RATAEGFKSLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPKTVEEKYLVPPARYPEL 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL G+S DN+PG+PG+G KTA   L  Y  LEN++  A  +K  K  +++ ++ +    
Sbjct: 177 AALVGESADNLPGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSLRDHLDDVVR 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +RKL  L  D+ + +                  L  L             D  A      
Sbjct: 236 NRKLNALVRDLDLDVT-----------------LAELARQPW--------DPKATRAVFD 270

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L+  T  ++  A+ +E D D  ++      +S    K  +  T                
Sbjct: 271 TLEFRTLWDRVRALASESDADEVVEADDTLEVSGTALKPRTLST---------------- 314

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                            W+    T G     + T   +       A+A+  +D       
Sbjct: 315 -----------------WLSA--TEGRVGVDV-TGRWENGSGDVEAVALGCVDG------ 348

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
               ++ D +    +D                 +  +    K  H+ K     L   G  
Sbjct: 349 --HAVWFDAAELDPEDE-----------KSFAAWLADNECPKAMHSAKGPVEALAGRGWE 395

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + G   D  L SY+L   R SH      +  L+ T  E  +       +D  +DS  +  
Sbjct: 396 VAGLTCDTELASYLLHPDRRSHKFDDAVRTHLNLTLGE-GEENSDQAMLDFGNDSSAE-- 452

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+L+ + +E
Sbjct: 453 SMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDILEGLRSE 512

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
             + +   +   ++ +GEK NLSSPKQL  +LF KL  P   +TK+G             
Sbjct: 513 FDERVTRAQGAAWEAAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYE 572

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             ++P + ++LE R   K++ T  D L   I     RVHT Y      TGRL+S +PNLQ
Sbjct: 573 KTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTIAATGRLSSKDPNLQ 630

Query: 722 NIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F +  D H +
Sbjct: 631 NIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTV 690

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF 
Sbjct: 691 TASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFSRFG 750

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+ 
Sbjct: 751 KVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADLI 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM++  + L +  L +++LLQ+HDEL+ EV ++E     QI+  +M  A      L V
Sbjct: 811 KLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAM----ELSV 866

Query: 961 PLKVNIKVSNNWQEE 975
           PL V+I V  +W E 
Sbjct: 867 PLTVSIGVGRSWFEA 881


>gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
          Length = 910

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 457/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 27  LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 83  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 143 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 203 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                              D  A     
Sbjct: 262 RNRKLNALVRDLDLDLTLAELARHPW-------------------------DPKATRAVF 296

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 297 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 331

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 332 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 375

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K+ H+ K     L   G 
Sbjct: 376 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKVMHSAKGPVEALAERGW 421

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 422 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 479

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 480 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 538

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 539 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 598

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 599 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 656

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 657 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 716

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 717 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 776

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 777 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 836

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 837 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 892

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 893 VPLTVSIGVGRSWFDA 908


>gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
 gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
          Length = 901

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/982 (27%), Positives = 441/982 (44%), Gaps = 99/982 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L L+DG S  YRAF+A P        G   NA+ GF +ML  LL+        +H
Sbjct: 11  TSRPRLLLIDGHSMAYRAFFALPVDKFSTTSGQHTNAVHGFISMLATLLRVEE----PTH 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD  + TFR E  P YK  R   PE    Q+PL++   +A  +  ++   FEADDI
Sbjct: 67  VAVAFDAGSTTFRTEALPSYKGTRDATPEPFKGQVPLIKEVLEAMHVRHLDKDNFEADDI 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           +AT +  A+  G  V + S D+D +Q V+    +   VK      ++  + V  K+G+ P
Sbjct: 127 LATLSSQADALGMEVLVCSGDRDSLQFVNENVTVLYPVKGVSELARMTPDAVRTKYGVEP 186

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +   L AL G++ DN+PG+PG+G KTAA  + ++G+LE IL  A  IK  K  E++ ++
Sbjct: 187 HQYPELAALVGETSDNLPGVPGVGPKTAAKWINQFGSLEQILDRAGEIKG-KAGESLRDH 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +  RL+R                                   +   L+  V   +  D 
Sbjct: 246 LDVVRLNR-----------------------------------QLNHLLTDVELPFGPDD 270

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             ++P   +                  T     QF +L ++   ++    P     E   
Sbjct: 271 LRVQPWDREA---------------MSTVFDALQFRTLRERLFAMH----PSADDDENAA 311

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +  + + +   +      + W  +                     +P+ + ++    
Sbjct: 312 PAVEVTVEDLAPGLL------EAWFAE------------------HDQRPLGLEVAGRPV 347

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     I        + D T  +      LS    +  +    K+ H  K     L
Sbjct: 348 PAGGDAWALAIADGPGSAVALDLTDLSAADDTALS---DWLSDPTRAKVVHGGKSVWHEL 404

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G S+ G   D  L +Y+    + S+D+  +A++ L      +  S         + +
Sbjct: 405 ASRGYSLEGVVFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDTSSDQGALDLSVGE 464

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                     +  +  L  +LR +L       +   L+ P+  V+  ME  GI +D D L
Sbjct: 465 DSEGGRLAVRAAALTDLAEVLRGELGDRSAEPLLTELELPLSAVLVHMERHGIAMDVDYL 524

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +++     + +     + Y++ G + NL SPKQL ++LF +L  P   K KTG     A 
Sbjct: 525 RELEQHFGELVTGAAASAYEVIGREVNLGSPKQLQEVLFDQLDMPKTKKIKTGYTTDAAA 584

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             +     ++P +K +L+ R  ++++ T  + L   +     R+HT +      TGRL+S
Sbjct: 585 LADLFVKTEHPFLKFLLDHRDSTRLRQT-VEGLLKSV-ADDGRIHTTFQQTIAATGRLSS 642

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPI+T+ G++IRRAF+       L++ADYSQIE+RI+AH++    L + F   
Sbjct: 643 TEPNLQNIPIRTEAGRRIRRAFVVGDGYETLLTADYSQIEMRIMAHLSGDEGLIEAFRTG 702

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  V + +F V    V+P MR   K +++ + YG+S F L+ QL I   EA+  ++ 
Sbjct: 703 EDLHNYVGSRVFQVETSAVTPAMRSKIKAMSYGLAYGLSSFGLSNQLNIDVKEASKLMED 762

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+  Y+    +  R NGY  TI GRR +  ++ S     R + ER A+NAPIQG
Sbjct: 763 YFTRFGGVRTYLAGVVDEARANGYTATIMGRRRYLPDLTSDNRQRREMAERMALNAPIQG 822

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+ V K +    L +++LLQ+HDEL+ EV   E+   + ++   M  A   
Sbjct: 823 SAADIIKVAMLGVEKEIAVRGLRSRLLLQVHDELILEVGHGELEELTTLVREQMGSAA-- 880

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             +L VPL V++   ++W +  
Sbjct: 881 --DLLVPLDVSVGTGSSWHDAG 900


>gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
          Length = 915

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 457/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 32  LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 87

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 88  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 147

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 148 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 207

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 208 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 266

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                              D  A     
Sbjct: 267 RNRKLNALVRDLDLDLTLAELARHPW-------------------------DPKATRAVF 301

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 302 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 336

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 337 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 380

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K+ H+ K     L   G 
Sbjct: 381 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKVMHSAKGPVEALAERGW 426

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 427 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 484

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 485 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 543

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 544 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 603

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 604 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 661

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 662 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 721

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 722 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 781

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 782 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 841

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 842 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 897

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 898 VPLTVSIGVGRSWFDA 913


>gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
          Length = 883

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/983 (31%), Positives = 494/983 (50%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  + S                           ++  +L   +   ++ +   T DC + 
Sbjct: 222 DQIKAS---------------------------KIKEYLIRDKNNAILGKKLATIDCTSP 254

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +D+   + K  A +    R    +      LS+               L  +++
Sbjct: 255 ------VDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSE---------------LPDVEE 293

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +     +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 294 IDNKVQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 350

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + L K  E+++  K   ++K + + L 
Sbjct: 351 Y--------------------VCDDVTLLQE--APLNKILEDKNIAKQVFDLKRNYVGLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R  I++    +DIML SY+ DS  ++ D+  +A  +  +     + I    K       +
Sbjct: 389 RLDITLSNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ---HSV 445

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++   
Sbjct: 446 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 506 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFDKLKLTPAKKTKTGY--ST 563

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 564 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 623 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA 862

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 863 A----QLDVPLIADANWGHNWYE 881


>gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
 gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
          Length = 880

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/980 (30%), Positives = 487/980 (49%), Gaps = 113/980 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DGSS I+RAF+A P L+   DG+  N + GF  M        + +    +  V
Sbjct: 3   KKTLMLIDGSSLIFRAFFALPKLTNN-DGVMTNGVYGFLTMYKNAFDRYKPD----YILV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  + TFR++ + DYKA R K+P  L  Q  +++    +  +   ++ GFEADDI+ T
Sbjct: 58  AFDRASKTFRHKEFKDYKATRNKMPSELSYQFGILKDILDSLNVKYTDLDGFEADDIVGT 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
           Y  +A++ G+   +I+ D+D +QLV     +  T K     ++  +  + +++G+ P+++
Sbjct: 118 YAKMAQEAGYDSVLITGDRDYLQLVDEKIVVNLTKKGVSETKEYTLATIKEEFGLTPKQL 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+ G                         I  KK  E I +Y   
Sbjct: 178 IDVKGLEGDKSDNIPGVEG-------------------------IGPKKAIEFIQKYGS- 211

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           L   +  +   K   R+         + 
Sbjct: 212 -----------------------------IEGLYEHIDEISGKKTKERL--------IDS 234

Query: 300 EPVVLDINTTENKGIAIETEIDRDT-TIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           EP+            +   E + +   +      SL ++ SK N  +  + +  E+    
Sbjct: 235 EPIAYMSKKIGTIVTSAPVEYELEELKVAEPDLPSLREKYSKYNFNKFIEDMDGEK---- 290

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           S+    + +Y K+ +    +++  K++  G  +FK + +     HSK   +AI T D   
Sbjct: 291 SEIVKKDFTYKKLDD---YEKFADKIKAKGEVTFKCLYEGESYIHSKVYKLAIKTKDSPA 347

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 +                        +   K  FE+E  LK   +IK D ++L++
Sbjct: 348 YILDPDQAF----------------------IDSFKDVFEDEKILKNSFDIKEDIVLLNK 385

Query: 479 YGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
            GI +   F+D+MLM Y++D  RSS+D+ +++Q +L Y      ++L   K S+   ++ 
Sbjct: 386 LGIDLNLPFDDLMLMHYLIDPSRSSYDLKTLSQAYLDYEVISEVDLLGKGKKSLSYGELD 445

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++  +     N I      L   L   K+  +YE ++  +  V++ MEI G   D+ +
Sbjct: 446 YDKLSNYLASELNAIEDAKAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGFVTDRKV 505

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  +  +I+K+L  L   IY+L+G +FN++S KQLG++LF  L  P   KTKTG + T A
Sbjct: 506 LLDLKEDINKDLEKLTSEIYELAGSEFNINSTKQLGEVLFKDLDLPVIKKTKTG-FSTDA 564

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             LE++    + II  I ++R+L K++STY + L   I+   +   TF       TGRL+
Sbjct: 565 SVLEKLR-DKHQIIPKIEKYRELFKLQSTYIEGLEKAIDDDGRIRSTFR-QNIAATGRLS 622

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQN+PIKTD G+ IR+AF +   K LI ADYSQIELRILA ++    + + F N 
Sbjct: 623 SQDPNLQNLPIKTDEGRLIRKAFKAGQGKILIDADYSQIELRILASLSGDEHMIEAFRNG 682

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A+++F   +++V+ + R  AK +NF IIYGIS + L+  L IPR EA  YI  
Sbjct: 683 EDIHAKTASKVFHTPLDEVTKRQRSDAKAVNFGIIYGISDYGLSQNLNIPRKEAKAYIDN 742

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   +P I  Y++      +++G+VET+F RR +  EINS   ++R+  +R A+N PIQG
Sbjct: 743 YMASYPSIKAYMDSIVEKAKEDGFVETLFNRRRYVPEINSKNFNVRSFGQRVALNTPIQG 802

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI   K+L+   L  K++LQIHDE++ E   E+  +A +I+ +SM++A   
Sbjct: 803 TAADIIKIAMIETDKNLKKAGLDAKIVLQIHDEIILEASLEDKDSAMEILRNSMQEAA-- 860

Query: 955 KINLRVPLKVNIKVSNNWQE 974
             NL+VPL V+I    +  E
Sbjct: 861 --NLKVPLIVDIDTGESMYE 878


>gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
          Length = 892

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 457/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 185 LAALMGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                              D  A     
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPW-------------------------DPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 279 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 314 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K+ H+ K     L   G 
Sbjct: 358 ---NAVWFDAAELSLEDE-----------DVFAAWLADKDRPKVMHSAKGPVEALAERGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 462 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 581 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 639 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 875 VPLTVSIGVGRSWFDA 890


>gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 457/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                              D  A     
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPW-------------------------DPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 279 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 314 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K+ H+ K     L   G 
Sbjct: 358 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKVMHSAKGPVEALAERGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 462 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 581 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 639 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 875 VPLTVSIGVGRSWFDA 890


>gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143]
 gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143]
          Length = 877

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/987 (33%), Positives = 486/987 (49%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELPQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K GI 
Sbjct: 118 IIGTLGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGIT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  IG KT   LL E+G+L                E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSL----------------EGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T +  
Sbjct: 222 NIDGMKASK------------------MKENLINDKEQAFL---------SKTLATIETQ 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q      Q   ++S+  P+ L    +
Sbjct: 255 A----PIEIGLEDLVYNGPDVENLGKFYDEMGFKQLK----QALNVSSKDAPESLDFTIV 306

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +SQ  ++ DS                        F       +      +  A S  D
Sbjct: 307 DHVSQDMLSADS-----------------------IFHFELFGENYHTDDLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L +E    LK+F E        ++ K  K++
Sbjct: 344 R--------------------LYATDKLELLQE--PILKEFLE--KTPLKVYDFKKAKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R+G++++    D  L  Y+L S   +++I++IA  +      +      K  K +IP 
Sbjct: 380 LNRFGLNLQAPAFDSRLAKYLL-STVENNEISTIANLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI++
Sbjct: 438 ---EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L +    TKMLLQ+HDE+V EVP+ E+     ++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKAELAAVKVLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 914

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/981 (28%), Positives = 463/981 (47%), Gaps = 103/981 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  +RAFYA P  + + H G   NA+ GF +ML  LL++ +     SH 
Sbjct: 23  DRPTLMLLDGHSLAFRAFYALPAENFKTHSGQVTNAVYGFTSMLINLLRDEQ----PSHV 78

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A  FD    TFR E +P+YKANR K P+    Q+ + +    A GIP +  +GFEADDII
Sbjct: 79  AAAFDVSRQTFRAEKFPEYKANRSKAPDEFKGQVEITKDVLGALGIPVMAEEGFEADDII 138

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT T  AE  G+ V +++ D+D +QLV+    +    K      +     V +K+G+ P 
Sbjct: 139 ATLTTQAEALGYRVLVVTGDRDSLQLVTDGVTVLYPKKGVSDLTRFTPAAVEEKYGLTPA 198

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPG+G KTA   ++EYG+L  ++ N  +++            
Sbjct: 199 QYPDFAALRGDPSDNLPGIPGVGEKTATKWIKEYGDLVGLVDNVDKVRG----------- 247

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                                            ++   L+      L+NR  T    D  
Sbjct: 248 ---------------------------------KVGDALRENLPNVLLNRELTEMVRDVP 274

Query: 298 -NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P  L +   + + I    +      ++   F++L+   ++            E  +
Sbjct: 275 LPYTPDQLMLAQWDREKIHALFDDLEFKVLRDRLFATLAPVEAEAE----------EGFE 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                          ++   +  W+    + G  S   +  T   +     AIA++  D 
Sbjct: 325 VRGSA----------LDPGAVADWLSAHASTGERSGVSVVGTRTPYGGDVTAIAVAAADG 374

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +                            T E    L  +  +    K  H  K+    L
Sbjct: 375 EGAYIATASA-------------------TPEDEKALGDWLADADQPKALHEAKWAMHAL 415

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKI 533
              G  + G   D  L +Y++  G+ + ++  ++ ++L      +E  + + S +     
Sbjct: 416 RGRGWVLGGLTSDTALAAYLVRPGQRTFNLDDLSLRYLRRELRVEETGEEQLSLLDDADQ 475

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            D++  E  I ++  +L L   L  +L   +   +   ++ P+++V++ +E +GI +D  
Sbjct: 476 VDAEAAETEILSARAVLDLAAALDTELDNIESTALLSEMELPLLEVLADIEASGIAVDGT 535

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L  + +  +  + +  E  Y + G++ NL SPKQL  +LF +L+ P   KTKTG     
Sbjct: 536 HLHDLQSRFAAEVSAAAEAAYGVIGKQINLGSPKQLQVVLFDELEMPKTKKTKTGYTTDA 595

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                      +P ++++L  R  +++K T  D L   + +   R+HT ++     TGRL
Sbjct: 596 EALQNLFEKTSHPFLEHLLAHRDATRLKVT-VDGLLKTVAEDG-RIHTTFNQTVAATGRL 653

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIP++TD G++IR  F+       L++ADYSQIE+RI+AH++    L + F 
Sbjct: 654 SSTEPNLQNIPVRTDAGRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDEGLIEAFN 713

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  V A  FGV IE+V+P++RR  K +++ + YG+S F LA QL+I   EA   +
Sbjct: 714 TGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEAKSQM 773

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RF G+ +Y+ +     R++GY  T++GRR +  ++ S     R + ERAA+NAPI
Sbjct: 774 EAYFARFGGVRDYLHEVVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPI 833

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI+V +SL D  L ++MLLQ+HDELV EV + E     Q++   M  A 
Sbjct: 834 QGTAADIIKVAMINVQRSLRDAGLKSRMLLQVHDELVLEVVDSEREQVEQLVRDKMSSA- 892

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
              I L VPL V++    +W 
Sbjct: 893 ---IELSVPLDVSVGTGRSWD 910


>gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
 gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
          Length = 883

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/983 (31%), Positives = 492/983 (50%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
              + S+                           +  +L   +   ++ +   T DC   
Sbjct: 222 AQVKASK---------------------------IKEYLIRDKNNAILGKKLATIDC--- 251

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              PV L I+  E +   +         +   +F S      +I+++             
Sbjct: 252 -TSPVDLKIDDLELQAQQLTQLRSFYERLGFKKFLSELPDVEEIDNK------------- 297

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 298 ----VQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 350

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + LKK  E+++  K   ++K + + L 
Sbjct: 351 Y--------------------VCDDVTLLQE--APLKKILEDKNIAKQVFDLKRNYVGLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R  I++    +DIML SY+ DS  ++ DI  +A  +        + I    K       +
Sbjct: 389 RLDITLSNVTDDIMLASYIADSENNARDIGVLANSYQESYVQSDEIIYGKGKKQ---HSV 445

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + +H+Y+ ++ P+  ++++MEI GI++   
Sbjct: 446 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQVHLYKNIEIPIAVILAKMEIAGIKVQAT 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 506 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTPAKKTKTGY--ST 563

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 564 SVDVLEKLKYQSPIVDDILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTATGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 623 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA 862

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 863 A----QLDVPLIADANWGHNWYE 881


>gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
 gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
          Length = 880

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/986 (28%), Positives = 496/986 (50%), Gaps = 120/986 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG S + RA++  P L+    GL  NA+ GF N+++K+L   + +    +FAV
Sbjct: 2   QGKLVLIDGHSILNRAYFGVPDLTNSQ-GLHTNAVYGFLNIMFKILDEEQPD----YFAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+++Y  YK  R  + E L  Q+P+++    A G+P + ++G+EADD++ T
Sbjct: 57  AFDLHAPTFRHKMYDAYKGTRKPMQEELREQVPVMKEMLTAMGVPLMMLEGYEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
               AE +G  V+IIS D+DL+QL +  T +     +      E  +   V++K+ + P 
Sbjct: 117 AAKKAEADGLTVSIISGDRDLLQLATDRTKIRIPKTKKGKTEIEDYNTAEVVEKYMVTPP 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY- 236
           ++V L+AL GD+ DNIPGIPG+G                         +K   + I EY 
Sbjct: 177 QIVDLKALMGDASDNIPGIPGVG-------------------------EKTAGKIISEYG 211

Query: 237 -AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA-LEFTKLINRVATTYDC 294
             E A                       +E+    +    L+   +  +L  ++A     
Sbjct: 212 SIENAY--------------------AHVEEIKPNKAKESLREHYDLAQLSKKLAK---- 247

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                I TE      ++ ++  +L  Q +    ++   +  L R
Sbjct: 248 ---------------------INTESPFTLDMEQAKMGNLFTQEAFELCKKLEFRNILPR 286

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
               +     +DS+  + +  + ++   + +  G   F ++T+       +   +A++  
Sbjct: 287 FSCDAPSDSVSDSFAVVTDLSEAEEVFVRAQKSGEIGFSLLTE-----QGELFGLALAPD 341

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           ++              +     +    +  LT++ L  L+     E  +    ++K ++L
Sbjct: 342 EEH-------------VYFIKKEGFLTEGYLTEKCLQLLQ-----EGRMAYTIDLK-EQL 382

Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPI 530
              R GIS R    D  + +Y+L+  +  +    IA+ + S     R E+      +  +
Sbjct: 383 AFLRAGISDRAKIADAAIGAYLLNPLKGQYPCEDIAKDYASLMIKGRAELFGKAPLAKVM 442

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           ++    ++ ++A   +        ++  KL   ++L ++  ++ P++  +  M+  GI++
Sbjct: 443 EE-QPEELAQYACYLAYTAKAAMPVILQKLRENQMLELFRDMEMPLVYTLYDMQEVGIRV 501

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           +   LK    E+   ++ LE+ IY  +GE+FN++SPKQLG ILF KLK P   KTK+G  
Sbjct: 502 NAQELKAYGEELYVRIVELEQEIYRDAGEEFNINSPKQLGVILFEKLKLPGAKKTKSG-- 559

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +    D  I+  ILE+RQL+K+KSTYAD L   I     R+H  ++   T T
Sbjct: 560 FSTAADVLEKLAPDYAIVAKILEYRQLAKLKSTYADGLAGFIAADG-RIHGTFNQTITAT 618

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR++S +PNLQNIP++T+LG+ +R+ FI+     LI ADYSQIELR+LA ++    L   
Sbjct: 619 GRISSTDPNLQNIPVRTELGRLLRKVFIAKEGYVLIDADYSQIELRVLAAMSGDETLIAA 678

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F ++ DIHR+ A+++F +  ++V+P  RR+AK +NF I+YGIS F L+  L I   EA +
Sbjct: 679 FRDNADIHRLTASQVFHIPFDEVTPLQRRNAKAVNFGIVYGISAFGLSEDLHISVKEAGE 738

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI +YF  +P + ++++      ++ GY ET+F RR    E+ S     R+  ER A+N+
Sbjct: 739 YIDKYFQTYPKVKDFLDNAVKEAKEKGYAETLFHRRRPVPELKSGNFMQRSFGERVAMNS 798

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AMI V++ L   +  ++++LQIHDEL+ E    E+    +++   M  
Sbjct: 799 PIQGTAADIIKIAMIRVNERLRAEQFQSRLILQIHDELLIEAEPSEVEAVKELLAQEMVN 858

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A    ++L V +++++K  N+W E +
Sbjct: 859 A----VHLSVAMEIDMKTGNSWYEAH 880


>gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
 gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
          Length = 877

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/987 (32%), Positives = 487/987 (49%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELPQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K G+ 
Sbjct: 118 IIGTLGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   LL E+G+L                E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSL----------------EGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T +  
Sbjct: 222 NIDGMKASK------------------MKENLINDKEQAFL---------SKTLATIETQ 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + ++     G  +E        +   Q      Q   ++S+  P+ L    +
Sbjct: 255 A----PIEIGLDDLVYNGPDVENLGKFYDEMGFKQLK----QALNVSSKDAPESLDFTIV 306

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            ++SQ  ++ DS                        F       +      +  A S  D
Sbjct: 307 DQVSQDMLSADS-----------------------IFHFELFGENYHTDDLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L +E    LK+F E        ++ K  K++
Sbjct: 344 K--------------------LYTTDKLELLQE--PILKEFLE--KTPLKVYDFKKAKVL 379

Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R G++++    D  L  Y+L S   +++I++IA  +      +      K  K +IP 
Sbjct: 380 LNRLGLNLQAPAYDSRLAKYLL-STVENNEISTIANLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI++
Sbjct: 438 ---EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L +    TKMLLQ+HDE+V EVP+ E+     ++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 930

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/1003 (31%), Positives = 498/1003 (49%), Gaps = 113/1003 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q  +   ++DG+S + RAFYA PLL  K  G   NAI GF  ML KL+Q+        + 
Sbjct: 7   QANDKFVVIDGNSLLNRAFYALPLLQTKQ-GFFTNAIYGFTTMLLKLVQDESPN----YL 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV+FD  A TFR+  +P+YK +R K P+ + PQ+P+++   +A  I   E  G+EADD+I
Sbjct: 62  AVVFDTKAKTFRHHKFPEYKGHRDKAPDEMRPQMPMLKELLEAMNINYFEKDGYEADDLI 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
             +T IA++E     +++ DKDL+QL+   T +  T K     E  D E V +++G+  +
Sbjct: 122 GAFTKIAKQEDKETMVVTGDKDLLQLLDDKTTILLTKKGITQMESYDGEKVKEEFGVNVD 181

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ L+ALTGD  DN+PG+PG+G KTA  LL  YG+LE +  +   +   K +  + +  
Sbjct: 182 KLIDLKALTGDKSDNVPGVPGVGKKTALKLLNNYGDLEKLYKSLDGV-GGKLQSKLADNK 240

Query: 238 ETARLSRKLVMLRTDVPI--TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + A LS++LV +  +  +   +    L   +   P+    L+  E   +           
Sbjct: 241 DKAFLSKELVTIDCEESLIENLDWNQLSKFEIASPKARELLQEWEMNSI----------- 289

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                               +E     D   K  Q      +TS  N +      ++   
Sbjct: 290 --------------------LERLPASDEEQKKDQSPVNEGKTSSFNWDN---FYYISEF 326

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +   + ++    I +        + L                          +ST  
Sbjct: 327 PHENSDNLESELEKFIQDGNHKMALYRHLPKK-----------------------LSTAK 363

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF----------ENEHFLKI 465
           QKD  S+      + +S++       +  L++ +   +              E+   LKI
Sbjct: 364 QKD--SYPEPEGGLVVSINDLIFYVPEKLLSQVLAETIAPKLIKGNDKGTETEDAPKLKI 421

Query: 466 G-HNIKYDKLVLHR------YGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
             +NIK    +         Y +    F   D  LM+Y+L+   + H I  +  ++    
Sbjct: 422 ASYNIKRIWHLFKNNTELDLYDLDTNKFLFYDTELMAYLLEPTEAPHSIEDMMNRYYG-- 479

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
                         D     Q  +   E   ++L L   L   L       +Y+ ++ P+
Sbjct: 480 ------------QFDLTPYGQDWQAVCERGAILLDLISPLEDILQERNQWQLYKNIELPL 527

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
             ++++ME  GI++D  +L ++ A I   L  +   I++++GE+FNL+SPKQLG ILF K
Sbjct: 528 AFILARMEFRGIKVDARVLTEMEANIDHRLSEISTKIFEIAGEEFNLNSPKQLGYILFEK 587

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           L+ P   KTKTG   +T     +    D  I K +L++RQL K+K+TY   L + I+K T
Sbjct: 588 LQLPVVKKTKTGY--STDAKTLETLSHDYEICKLLLDYRQLHKLKTTYLVGLKDLISKTT 645

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIEL 755
            ++HT Y+   T TGRL+S +PNLQNIPIK + G+KIR+ F I    +  ++ADYSQIEL
Sbjct: 646 GKIHTTYNQTITATGRLSSTDPNLQNIPIKLEEGRKIRKGFVIQNSDQLFLAADYSQIEL 705

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RILAH+++ T L Q F+   DIH   AA++F V   +V+ +MR HAK +NF I+YGIS +
Sbjct: 706 RILAHVSEDTNLIQAFQEQQDIHTQTAAQVFEVESTQVTREMRSHAKAVNFGIVYGISDY 765

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+ QL I R +A  YI  Y  RF G+ EY+++  N  + NGYVET++ RR +  +I+  
Sbjct: 766 GLSRQLGISRKQAKTYIDNYLTRFSGVKEYMDQIVNQAKMNGYVETLYNRRRNLPDISHR 825

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH--KLATKMLLQIHDELVFEVP 933
             +IR+  ER AIN PIQG+AADI + AM+ V K LE         +LLQ+HDEL+ E+ 
Sbjct: 826 NFNIRSAAERTAINTPIQGTAADIIKDAMVKVEKELEKQDLLDKAALLLQVHDELILEIN 885

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +E ++  +  +   ME      I L+VPL V++K   NW + N
Sbjct: 886 KEVLSDVATKVKEIMEN----IIELKVPLTVDLKTGPNWYDLN 924


>gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda]
 gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/977 (35%), Positives = 511/977 (52%), Gaps = 103/977 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   +FL+DG  FI+R ++    L   H+G P+  + GF  M+  ++     E    +  
Sbjct: 5   KNKKIFLLDGYPFIFRGYFVNQDLI-SHNGTPIGGVYGFTTMIMNIINEFNPE----YMV 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD     FR++IYP+YK +RP++P  L  Q PLVR   +   I AIE++G EADD+IA
Sbjct: 60  VVFDTGVDNFRHKIYPEYKNHRPELPSELKIQFPLVREIVKYLNISAIEMEGVEADDVIA 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +           + I+S+DKDL+QLV+    +YD +K++ I  +  I+K G+ P ++   
Sbjct: 120 SLANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYIREKETIEKLGVRPSQVRDF 179

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +LTGD  DNIPGIPGIG KTA  LL+++ +L NIL N + I   + R+ I E+ + A L
Sbjct: 180 LSLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQLAEL 239

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S +LV L+ D+ + + +E+L     N  ++           LI++               
Sbjct: 240 SWQLVGLKQDLNLNLSVENLRWSPPNAEQI---------RTLIHKFG------------- 277

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                       F+SL  + SK+   +         + K     
Sbjct: 278 ----------------------------FTSLITKASKLFKLE-----LSHLVAKYPLSR 304

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +N S  +I N++ + Q   + +  G  S  +  +  D      I+I  S    K     
Sbjct: 305 ASNISKIEITNSEILLQVKSRAQESGYLSVLLEKEKNDY-----ISITFSLDLHK----- 354

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--- 479
                FIDL+  TS++            S + +   +    KI +N+K   + L  +   
Sbjct: 355 ---LYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKELLIFLLNFLRT 411

Query: 480 GISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            I+     +DIMLM Y+L +G++   +  I Q +                  +K    Q 
Sbjct: 412 EITSASCIDDIMLMHYILSAGKNELSLNEIIQTY------------------NKSYSEQY 453

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            EH +            L  +L   KLLH Y  +D P+  ++  +E  GI+I+  LLK +
Sbjct: 454 SEHKVCWLKNTFDN---LMSELFKNKLLHCYYEIDLPICYILRNIENNGIKINVPLLKDL 510

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTAQDL 657
           SA++   +  LE++IY + G++FN++SPKQLG+ILF  LK P      KT  + T ++ L
Sbjct: 511 SAQLKHKIDLLEQHIYQICGQEFNIASPKQLGEILFDVLKLPHAKVSQKTKSYSTDSEVL 570

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E ++     I   +L+WRQL+K+ +TY D+LP  IN  T RVHT     ST T RL+S  
Sbjct: 571 ENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHTTLLQTSTTTSRLSSHS 630

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G K+R AF++PP  K++SADYSQIELRIL++ A I  L  VF    DI
Sbjct: 631 PNLQNIPIRSEYGLKVRSAFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDI 690

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AA+IF +N ++V+ + RR AK INF IIYGIS F LA QL I  +EAA YI  YF 
Sbjct: 691 HSSTAAQIFKINADQVTEENRRKAKAINFGIIYGISAFGLAKQLNISNTEAAQYINHYFQ 750

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I +Y+ +TK F  ++GYV+ + GRR +   INS   + RN  +RAAINAPIQ +A+
Sbjct: 751 EYPAIRQYMHETKKFAVEHGYVKNMIGRRCYIPLINSSNLTTRNFAQRAAINAPIQSTAS 810

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI   K +     A K+LLQ+HDELVFE+PEE + TA  +I  +ME        
Sbjct: 811 DIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPEELVDTACNLIKSTMENIPY---- 866

Query: 958 LRVPLKVNIKVSNNWQE 974
              PLKV +K+ +NW E
Sbjct: 867 FSFPLKVELKIGDNWGE 883


>gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202]
          Length = 931

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 456/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 48  LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 103

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 104 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 163

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 164 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 223

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 224 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 282

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                              D  A     
Sbjct: 283 RNRKLNALVRDLDLDLTLAELARHPW-------------------------DPKATRAVF 317

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 318 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 352

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 353 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 396

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K  H+ K     L   G 
Sbjct: 397 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKAMHSAKGPVEALAERGW 442

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 443 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 500

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 501 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 559

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 560 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 619

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 620 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 677

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 678 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 737

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 738 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 797

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 798 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 857

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 858 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 913

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 914 VPLTVSIGVGRSWFDA 929


>gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
 gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
          Length = 910

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/977 (34%), Positives = 510/977 (52%), Gaps = 103/977 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   +FL+DG  FI+RA++    L+  H+G P+  + GF  M+  ++     E    +  
Sbjct: 26  KNKKIFLLDGYPFIFRAYFVNQDLT-SHNGNPIGGVYGFATMIMNIISEFNPE----YMV 80

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD     FR++IYP+YK++RP++P  L  Q PLVR   +   I  IE++G EADD+IA
Sbjct: 81  VVFDTGLDNFRHKIYPEYKSHRPELPSELKIQFPLVREIVKYLNINTIEMEGVEADDVIA 140

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +           + I+S+DKDL+QLV+    +YD +K++ I  +  I+K G+ P ++   
Sbjct: 141 SLANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYIREKETIEKLGVRPSQVRDF 200

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            +LTGD  DNIPGIPGIG KTA  LL+++ +L NIL N + I   + R+ I E+ + A L
Sbjct: 201 LSLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQLAEL 260

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S +LV L+ D+ + + +E+L     N  ++           LI++               
Sbjct: 261 SWQLVGLKQDLNLNLSVENLRWSPPNAEQI---------RTLIHKFG------------- 298

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                                       F+SL  + SK+   +         + K     
Sbjct: 299 ----------------------------FTSLITKASKLFKLE-----LSHLIAKYPLSR 325

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            +N S  +I N +   Q   K +  G  +  +  +  +      I+I  S    K     
Sbjct: 326 ASNISKIEITNPEIWLQVKNKAQESGYLAVLLEKEKNNY-----ISITFSLDLHK----- 375

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--- 479
                FIDL+  TS++            S + +   +    KI +N+K   + L  +   
Sbjct: 376 ---LYFIDLTAITSKEQNRAIATNPWWKSSIIELLLDSSIQKITYNLKELLIFLLNFLRT 432

Query: 480 GISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            I+     +DIMLM Y+L +G++   +  I Q +     +                    
Sbjct: 433 EITSASCIDDIMLMHYILSAGKNDLSLNEIIQTYNKSYSE-------------------- 472

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +++      +   +  L  +L   KLLH Y  +D P+  ++  +E  GI+I+  LLK++
Sbjct: 473 -QYSENKVCWLKNTFDNLMSELFKNKLLHCYYEIDLPICYILRNIENNGIKINVPLLKEL 531

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTAQDL 657
           SA++   +  LE+ IY + G++FN++SPKQLG+ILF  LK P      KT  + T ++ L
Sbjct: 532 SAQLKHKIELLEQQIYKICGQEFNIASPKQLGEILFDVLKLPHAKVSQKTKSYSTDSEVL 591

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E ++     I   +L+WRQL+K+ +TY D+LP  IN  T R+HT     ST T RL+S  
Sbjct: 592 ENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRIHTTLLQTSTTTSRLSSHS 651

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G K+R AF++P   K++SADYSQIELRIL++ A I  L  VF    DI
Sbjct: 652 PNLQNIPIRSEYGLKVRSAFVAPQGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDI 711

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AA+IF +N ++V+ + RR AK INF +IYGIS F +A QL I  +EAA YI  YF 
Sbjct: 712 HSSTAAQIFKINADQVTEEHRRKAKAINFGVIYGISAFGVAKQLNISNTEAAQYINHYFQ 771

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            +P I +Y+++TK F  +NGYV+ + GRR +   INS   + RN  +RAAINAPIQ +A+
Sbjct: 772 EYPSIRQYMDETKKFAVENGYVKNMIGRRCYIPLINSSNLTTRNFAQRAAINAPIQSTAS 831

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI   K +     A K+LLQ+HDELVFE+P E + TA  +I  +ME        
Sbjct: 832 DIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPNELVDTACNLIKCTMENIPY---- 887

Query: 958 LRVPLKVNIKVSNNWQE 974
              PLKV +K+ +NW E
Sbjct: 888 FSFPLKVELKIGDNWGE 904


>gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
          Length = 886

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/988 (30%), Positives = 489/988 (49%), Gaps = 119/988 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAFYA           DGL  NAI  F NML  +L+       
Sbjct: 1   MGSQKSLLLIDGNSVAFRAFYAMHQVLDSFTNQDGLHTNAIYAFKNMLDIILKRFE---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR   + DYK  R K P  L  Q P ++    A+GI   E+  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTAQFADYKGGRSKTPPELTEQFPYIKELLHAYGIQTAELANYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    AE++GF V I++ D+DL QL +  T +  TVK     E    EHV +K G
Sbjct: 117 DDIIGTLASQAEQDGFVVNIVTGDRDLTQLTTDKTTVNITVKGVNDTEAYTPEHVQEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P ++V L+ L                          G+  +     +++ +K   + +
Sbjct: 177 LAPSQIVDLKGLM-------------------------GDTSDNYPGVTKVGEKTALKLL 211

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E+                                   +   + A++ +K+   +     
Sbjct: 212 TEFGS------------------------------IEGVYENVDAMKKSKMKEHLIE--- 238

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                      D      K   I  +   +TT+    +   +  T     ++   + FL+
Sbjct: 239 ---------DRDQAFMSKKLATILRDAPIETTLADITYEGPNIDTLIAFYQEMNFQNFLK 289

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           +L    +     ++Y   V T D  + VQ ++T    +F +   T +   +  I   I  
Sbjct: 290 QLNVTPEAVEPAENYQYTVLTLDNLETVQAIKTP--VAFGVEMLTDNYHTADLIGFYIGA 347

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            D           +  D+++                   LK + E+    K    +K  +
Sbjct: 348 PDH--------WYVSDDVALLAEP--------------VLKDWLEDASHPKAVFGVKRTQ 385

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA--QKWLSYTRKE--ILKSRKSSI 528
           +  +R G+ + G + D++L SY+L++  +S+D+ ++A   ++ +    E    K  K ++
Sbjct: 386 VAANRLGVHLAGVDFDLLLASYLLNTTNNSNDLGTVANLHEYQNVQTDEAVYGKGAKRAV 445

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P +    + + +H ++ +  I  L   L  +L   +   ++  ++ P+  V++QMEITGI
Sbjct: 446 PTE---PALLYQHLVQKAAAIYHLQPQLEEQLKEHQQFDLFTDMELPLALVLAQMEITGI 502

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D   L+Q+ +E S+ L  LEE +Y  +GE FN++SPKQLG ILF K+  P   KTKTG
Sbjct: 503 RVDASRLQQMGSEFSQTLKILEEKVYAEAGETFNINSPKQLGVILFEKMGLPVVKKTKTG 562

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +    D PI++ IL++RQ++KI+STY + L   I+ +  +VHT Y    T
Sbjct: 563 Y--STAVDVLEQLRKDAPIVQTILDYRQIAKIQSTYVEGLLKSIH-QDNKVHTRYLQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++   G+KIR+AF+   P  ++ ++DYSQIELR+LAHI+    +
Sbjct: 620 QTGRLSSVDPNLQNIPVRLAEGRKIRQAFVPSHPDWQMFASDYSQIELRVLAHISGDANM 679

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+   DIH   A +IFG+N  ++V+P MRR AK  NF I+YGIS + L+  + I R 
Sbjct: 680 QEAFKEDRDIHANTAMKIFGLNSADEVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRQ 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  +I  YF ++PG+ +++       R+ GYVET+F RR +  +I++   ++R+  ER 
Sbjct: 740 EAKRFIDAYFEQYPGVQQFMVDIVKKAREEGYVETLFHRRRYLPDIHAKNFNLRSFAERT 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + + L+   L  +MLLQ+HDEL+FE P EEI    +++  
Sbjct: 800 AMNTPIQGSAADIIKVAMILMQQELKKANLQARMLLQVHDELIFEAPTEEIPILQKLVPS 859

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M+ A    + L VPLKV       W +
Sbjct: 860 VMDSA----VKLAVPLKVESGFGPTWYD 883


>gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 457/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                              D  A     
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPW-------------------------DPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 279 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 314 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K+ H+ K     L   G 
Sbjct: 358 ---NAVWFDAAELSLEDE-----------DVFAAWLADKDRPKVMHSAKGPVEALAERGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 462 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 581 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 639 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 875 VPLTVSIGVGRSWFDA 890


>gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 918

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/979 (28%), Positives = 453/979 (46%), Gaps = 97/979 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++ +     +HFA
Sbjct: 24  RPRLMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASMLANTLRDEQ----PTHFA 79

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    T+R E + +YKANR K P+    Q+ L+             ++GFEADDIIA
Sbjct: 80  VAFDVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIA 139

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE  GF V I++ D+D  QLVS  T +    K      +   E V +++G+ P +
Sbjct: 140 TLATQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQ 199

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA  + ++G+   ++  A  +K  K  +N  ++  
Sbjct: 200 YPDFAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKG-KAGQNFRDH-- 256

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                                                   L+  KL  R+          
Sbjct: 257 ----------------------------------------LDAVKLNRRLTEMVRDVPLP 276

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P  L+    + K +A+  +          +     D  ++   E   + + L+     
Sbjct: 277 KGPGELERAAYDRKQLAVLLDTLEIRNPSLRERLLAVDPGAEEEQEPVTEDVALDATLVP 336

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   +                    LE  G+A   + T  +D +      +A   L    
Sbjct: 337 AGGKLAP-----------------WLEEHGAAVLGVAT--VDTWKLGAGEVAEVALATAG 377

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +      F   ++  + +                 +  +    KI H+ K    V   
Sbjct: 378 GAAGGAAAWFEPSALDEADE------------RAFAGWLGDPERPKIMHDAKGLMRVFGE 425

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS--SIPIDKISD 535
           +G+S+ G   D  L +Y++  GR +  + +++ ++L    +E++ +++S   +      +
Sbjct: 426 HGMSVAGVSMDTALGAYLVKPGRRTFALGALSLEYLG---RELVPAQESDGQLAFGADDE 482

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           SQ +   +E +  IL L   L  +L       +   ++ P   ++++ME  GI+ D+  L
Sbjct: 483 SQARTLMVE-ARTILDLGTALTARLPEVGAEGLLTDIELPTSALLARMERAGIKADRAHL 541

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +++  + +  +       +   G +FNL SPKQL ++LF +L  P   KTKTG       
Sbjct: 542 EEMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADS 601

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   ++ +   +L  R+ +K++ST  + L   I     R+HT ++     TGRL+S
Sbjct: 602 LAWLAGQTEHELPVIMLRHREQAKLRST-VEGLIKSIAPDG-RIHTTFNQTVAATGRLSS 659

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L   F + 
Sbjct: 660 TDPNLQNIPVRTDEGRAIRRGFVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAFTSG 719

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+HR VA  +FGV    V  +MRR  K +++ + YG+S F L+ QL I   EA   +  
Sbjct: 720 EDLHRTVAGYVFGVEPAAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAGEARALMDT 779

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+ +     R  GY  T+ GRR +  ++NS     R   ER A+NAPIQG
Sbjct: 780 YFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLNSDNRQRREAAERMALNAPIQG 839

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM++V ++L + +L ++MLLQ+HDE+V E+   E     +I+   M  A   
Sbjct: 840 TAADIVKIAMLNVDRALREAELTSRMLLQVHDEIVLELAPGERAPVEEILRREMAAAA-- 897

Query: 955 KINLRVPLKVNIKVSNNWQ 973
              LR PL V++ V  +W+
Sbjct: 898 --ELRAPLTVSVGVGRDWE 914


>gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
 gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
          Length = 871

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/976 (30%), Positives = 469/976 (48%), Gaps = 115/976 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L     E    +  V F
Sbjct: 4   KIVLIDGHSILNRAFYGLPDLTN-SEGLHTNAVYGFLNIMFKILDEEAPE----YLTVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+E+Y DYK  R  + E L  Q+P+++   +A GI  IE  G EADD++ T +
Sbjct: 59  DVHAPTFRHEMYADYKGTRKPMAEELRQQVPVIKDVLKAMGINIIEQAGLEADDLLGTIS 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
               ++G  V++IS D+DL+QL +    +     +      E    E V +++ + PE+ 
Sbjct: 119 KRCGRQGMDVSVISGDRDLLQLATKRVKIRIPKTKQGRTEIEDYYAEDVKERYQVTPEEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD+ DNIPG+P IG KTA  ++ EY ++                EN  E+ E 
Sbjct: 179 IDLKALMGDASDNIPGVPSIGEKTATKIITEYHSI----------------ENAYEHVEE 222

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            +                            PR    LK      +++R     + DA   
Sbjct: 223 LK---------------------------PPRAAKALKEHWDMAVMSRKLAKINVDAG-- 253

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
               +     E K   + TE +     +  QF +L  +        + +  F E      
Sbjct: 254 ----VAFRLDEAKLGNVFTE-EAYGWFQRLQFKNLLGRFDVKAPSNSVEDCFREIASPEE 308

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I  ++             + K        F        A  +    I +       D
Sbjct: 309 AGKILAEA----KKAALAGAVIFKDTKNTLPLF--------AGQADIGGIGLCY---GAD 353

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             F +       + +  ++        KE+   ++ F           +IK         
Sbjct: 354 KIFCIRADGDITAEYLLRE-------LKEVSGSVQTF--------SMFDIKESMQYFTVA 398

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
                   D+ + +Y+L+  ++ +    +A++ L    +            DK+ D    
Sbjct: 399 --EPSACFDVTIAAYLLNPLKNDYTYEDVAREQLGLLLE------------DKVEDHV-- 442

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
                 +         LR KL   ++ H++  ++ P++  +  ME  G++I+ + LK   
Sbjct: 443 -KVCYEAYTAYASVEPLRQKLKETQMEHLFTDIEMPLVFTLYDMEQNGVRIEAEALKFYG 501

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            ++   +  LE+ IY+ +GE+FN++SPKQLG ILF K+    G KTKTG   +TA D+  
Sbjct: 502 EQLGIKIEELEKEIYEAAGEEFNINSPKQLGVILFDKMGLKGGKKTKTGY--STAADVLD 559

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               D P++  ILE+RQL+K+KSTYAD L N+I+    R+H  ++   T TGR++S EPN
Sbjct: 560 KLAPDYPVVAQILEYRQLTKLKSTYADGLSNYISGDG-RIHGKFNQTITATGRISSTEPN 618

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++ +LG+ IR+ FI       I ADYSQIELR+LAH +    L   ++   DIHR
Sbjct: 619 LQNIPVRMELGRLIRKVFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHR 678

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+++F V   +V+   RR+AK +NF I+YGIS F L+  L I R EAA YI  YF  +
Sbjct: 679 ITASQVFHVPFGEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAKYIDDYFKTY 738

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  +++ T    ++ GYV T+FGRR    E++S     R+  ER A+N+PIQG+AADI
Sbjct: 739 PGIKLFLDDTVAHAKEMGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADI 798

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V++ L++  + ++++LQ+HDEL+ E    E+     I+   ME A     +L 
Sbjct: 799 IKIAMIGVNRRLKEKHMRSRLVLQVHDELLIEAYGPELEEVKAILKDEMEHAA----SLE 854

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL++++   +NW E 
Sbjct: 855 VPLEIDMHTGDNWYEA 870


>gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO]
 gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO]
          Length = 868

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/978 (31%), Positives = 480/978 (49%), Gaps = 128/978 (13%)

Query: 15  FIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA 69
             +RAF+  PL +     +  +GL  NAI  F  M   ++Q  +     +H  V FD   
Sbjct: 1   MAFRAFF--PLHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTHVLVAFDAGK 54

Query: 70  VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE 129
            TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDII T     +
Sbjct: 55  TTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDIIGTLAEKVD 114

Query: 130 KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKMVCLQA 184
           K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ G+ P++++ ++ 
Sbjct: 115 KDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLTPKQIIDMKG 174

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ DNIPG+  IG KTA  LL++YG++E I                 E+ +  + S+
Sbjct: 175 LAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY----------------EHIDEMKQSK 218

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                             + E+    +  +FL          ++AT          PV +
Sbjct: 219 ------------------MKENLINDKEQAFLSK--------KLATI-----NTSAPVDV 247

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            I++ + +G  ++  +      K   F+    + + +  E     +  E + +  +    
Sbjct: 248 SIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILFEVVHEFKEEMFT 304

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            D                        +  +     +    + + +A  T         K 
Sbjct: 305 TD-----------------------MALYVEMMGDNYHTEEIVGVAWGTE--------KK 333

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             +  DLSV  ++                  +  +   LK  ++ K   + L+RY    +
Sbjct: 334 IYVTNDLSVFENR--------------AFHSWITDPTRLKKVYDAKRTYVALNRYTGKTK 379

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G + D++L +Y+LD+   S DI  IA  +    +        K  K  +P ++       
Sbjct: 380 GIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEE---ELFF 436

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H       I  L   L  +L  +    ++ +++ P+  ++++MEI+GI++D   L+++ 
Sbjct: 437 AHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMK 496

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   KTKTG   +TA D+ +
Sbjct: 497 GEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKTGY--STAVDVLE 554

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                 PI+++IL +RQ++KI+STY + L   I    + VHT Y    T TGRL+S++PN
Sbjct: 555 QLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGK-VHTRYVQTLTQTGRLSSVDPN 613

Query: 720 LQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ D G+KIR+AF+       + S+DYSQIELR+LAHI+    L   F    DIH
Sbjct: 614 LQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 673

Query: 779 RMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
              A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R  A  YI  YF 
Sbjct: 674 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 733

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           ++PG+ EY+E+     +  GYVET++ RR +  +INS   +IR+  ER AIN PIQGSAA
Sbjct: 734 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 793

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI + K L++  L   MLLQ+HDELVFEVPE+E+ +  +++   ME+A    ++
Sbjct: 794 DILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA----VS 849

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPL  +      W E 
Sbjct: 850 LHVPLITDSSWGKTWYEA 867


>gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
 gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
          Length = 873

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/974 (31%), Positives = 490/974 (50%), Gaps = 110/974 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DGSS ++RAF+A P L +   G P NA+ GF  ML KL +    +    + AV 
Sbjct: 2   KKLMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEINPD----YIAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E+Y +YK NRP  PE L PQ  L++   +A GI  IE +GFE DDI+ + 
Sbjct: 57  FDKGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           +        AV II+ D+D +QLV+  + ++ T K      ++ ++++ + +G  P+K++
Sbjct: 117 SKKFGTPEMAVKIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GDS DNIPG+PG+G KTA  L+ EYGNLE++  +   I  KK +E ++E     
Sbjct: 177 EMKALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVE----- 231

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             ++ L                                      ++R   T   D     
Sbjct: 232 --NKDLA------------------------------------FLSRELATIKTD----- 248

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              +D++      +      +     +T  F+ L+ +  ++   +      L  L     
Sbjct: 249 ---MDLSYKVEDFVQNFHTSEVQPLFETLGFTKLTPRIVQVMGGEEAAFGDLGSL----- 300

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     + +  D +       T  + +  ++ D    F +    I  + L   D T
Sbjct: 301 --FAPQEEISLDDVADAKALTPDFYTDKTVAVHVVLDGKTPFRT----IETAYLSNGD-T 353

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
             K       L+V     +    T TKE++  L +  E+   + + +N            
Sbjct: 354 IVKTNDTKAVLAVLQGAKAIV-TTQTKELIEALGE--ESPAEISLFNN------------ 398

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            +     D+ L++Y+LD  R+++    + +++              S+P   I+   V  
Sbjct: 399 DNTARIHDMSLLAYLLDPTRTNYGYLYLTERF--------------SVP--SIASGSVDV 442

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             +     +L +  +       E+L  +YE ++ P+I  +  ME  GI ID + L + +A
Sbjct: 443 ECVSMVKALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTNKLAETTA 502

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
                L  +++ IYDL+GE FN++SPKQLG ILF K+  P   KTKTG   +T  ++  +
Sbjct: 503 RFKDELAQVQQEIYDLAGETFNINSPKQLGVILFEKMNLPVIKKTKTGY--STDAEVLDM 560

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++PI++ IL +R ++K+ STY + L   IN +T+R+HT ++   T TGRL+S +PNL
Sbjct: 561 LRNESPIVEKILAYRSVAKLVSTYLEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPNL 620

Query: 721 QNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F        L+SADYSQIELRILAH++    L + F +  DIHR
Sbjct: 621 QNIPVRTEKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVDGKDIHR 680

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAE+ G   E V+ + R HAK INF IIYGIS F L+  L I R EA +YI  YF R+
Sbjct: 681 FTAAEVLGKAQEDVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRY 740

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY+++      + G V T+FGR+    +INS   + R+  ER A+N PIQG+AADI
Sbjct: 741 PKVKEYMDRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADI 800

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM  V + LE+    +++LLQ+HDELV EV  EE+    +++  +M+      + L 
Sbjct: 801 IKLAMNQVEQKLEEGNFKSRLLLQVHDELVLEVVNEELEAVEELLRSTMQSV----VELH 856

Query: 960 VPLKVNIKVSNNWQ 973
           VPL V++  + NW 
Sbjct: 857 VPLIVDVHHAENWA 870


>gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
 gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
          Length = 883

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/983 (31%), Positives = 494/983 (50%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  + S                           ++  +L   +   ++ +   T DC + 
Sbjct: 222 DQIKAS---------------------------KIKEYLIRDKNNAILGKKLATIDCTSP 254

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +D+   + K  A +    R    +      LS+               L  +++
Sbjct: 255 ------VDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSE---------------LPDVEE 293

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +     +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 294 IDNKVQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 350

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + L K  E+++  K   ++K + + L 
Sbjct: 351 Y--------------------VCDDVTLLQE--APLNKILEDKNIAKQVFDLKRNYVGLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R  I++    +DIML SY+ DS  ++ D+  +A  +  +     + I    K       +
Sbjct: 389 RLDITLSNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ---HSV 445

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++   
Sbjct: 446 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 506 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTPAKKTKTGY--ST 563

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 564 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 623 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQA 862

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 863 A----QLDVPLIADANWGHNWYE 881


>gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  712 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/976 (28%), Positives = 457/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  ++  K  ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVRG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                              D  A     
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPW-------------------------DPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 279 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 314 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K+ H+ K     L   G 
Sbjct: 358 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKVMHSAKGPVEALAERGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 462 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 581 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 639 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 875 VPLTVSIGVGRSWFDA 890


>gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
 gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
          Length = 871

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/983 (29%), Positives = 482/983 (49%), Gaps = 129/983 (13%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG S + RAFY  P L+   +GL  NA+ GF N+L+K+L+  + E    +  V F
Sbjct: 4   KIVLIDGHSILNRAFYGVPDLTNA-EGLHTNAVYGFLNILFKILEEEKPE----YLTVTF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+E++ DYK  R  + E L  Q+P+++   +A  I  IE  G EADD++ T +
Sbjct: 59  DVHAPTFRHEMFADYKGTRKPMAEELRQQVPVIKEVLKAMDIAIIEKAGLEADDLLGTIS 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
              E++G  V +IS D+D +QL +    +     +      E      V +++ + P + 
Sbjct: 119 RTCEEKGMEVAVISGDRDTLQLATEHVKIRIPKTKGGRTEIEDYYAADVKERYEVTPTEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY--A 237
           + ++AL GD+ DNIPG+PG+G                          K   + I+EY   
Sbjct: 179 IDVKALMGDTADNIPGVPGVGE-------------------------KTATKIIVEYGSL 213

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A                       +E+   PR    LK       +++V  T D  A 
Sbjct: 214 ENAY--------------------AHVEELKPPRASKNLKEFWEQAKLSKVLATIDTHAE 253

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 L+ +  + K   + T+ +  T  +  QF +L  +     +E   +K F E    
Sbjct: 254 ------LEFSLEDAKHGNMFTK-EAYTWFQKLQFKNLLGKFDVEAAENEVEKAFRE---- 302

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        +   ++I++   + +                  ++ +  A+   D  
Sbjct: 303 -------------VTEQEEIERIFSEAKK-----------------AECVGAALIKCDGN 332

Query: 418 DDTSFKVETIFIDLSVHTSQD-----STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               F   + +  +++   +D     +   +T    + + L           +  ++K  
Sbjct: 333 VLPLFAHPSGYGRIALAYGKDQVYSIACSMDTDMDALFAQLSDV-ARSAGRFVMFDLKKY 391

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
             VL    +  +   D  + +Y+L+  ++ +    +A++ L     +             
Sbjct: 392 LPVLGA--VCQKNCFDATVAAYLLNPLKNDYTYEDVAREQLGLMMDD------------- 436

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              +     +   +         L  KL  E++  ++  ++ P++  +  ME  G++I+ 
Sbjct: 437 --KADEWTKSCYEAYTAYAASEKLMEKLKEEQMDRLFLEIEMPLVFTLFDMEQAGVRIEA 494

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + LK+   ++ + ++ LE  IY+++GE FN++SPKQLG ILF KL+ P   KTKTG   +
Sbjct: 495 EELKKYGEQLGEQIVQLESEIYEMAGENFNINSPKQLGVILFEKLQMPHAKKTKTGY--S 552

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+ +    + PI+  ILE+RQL+K+KSTYAD L N+I     R+H  ++   T TGR
Sbjct: 553 TAADVLEKLAPEFPIVDKILEYRQLTKLKSTYADGLANYIGPDG-RIHGTFNQTITATGR 611

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++S EPNLQNIP++ +LG+ IR+ F+       I ADYSQIELRILAH +    L Q + 
Sbjct: 612 ISSTEPNLQNIPVRMELGRLIRKVFVPQEGYVFIDADYSQIELRILAHCSGDAHLIQAYR 671

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
            + DIHRM A+++F    ++V+   RR+AK +NF I+YGIS F L+  L I R EA+ YI
Sbjct: 672 EAQDIHRMTASQVFKTPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASQYI 731

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF  +PGI ++++ +    ++ GY  T+FGRR    E+ S     RN  ER A+NAPI
Sbjct: 732 ESYFETYPGIKKFLDDSVTHAKEEGYAVTLFGRRRPIPELKSSNFMQRNFGERVAMNAPI 791

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI V++ L++ ++ ++M+LQ+HDEL+ E   +EI T  +I+   ME A 
Sbjct: 792 QGTAADIMKIAMIGVNRELKEKRMKSRMILQVHDELLIETHPDEIETVKEILKRQMETAA 851

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
               +L VPL  +++V  NW E 
Sbjct: 852 ----SLDVPLIADMQVGKNWYEA 870


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/732 (44%), Positives = 462/732 (63%), Gaps = 18/732 (2%)

Query: 263 ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGI----AIET 318
           +LE  NGP+LI FLK +EFT L  RVA   DCDA+ IEP V+ I   +        A E 
Sbjct: 1   MLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDASAIEPAVVRIEWGDAAHGPDLDAAEP 60

Query: 319 EIDRDTTIKTSQFSSLSDQTSK--INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376
                   + S  S      +K  +    +P  L   R +  +  P ++ +Y  I +   
Sbjct: 61  APVAGGIPEVSGQSVPVPPRAKAGVEGAFSPADLAKARAEAFAALPFDHSAYVTIRDLAT 120

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF-KVETIFIDLSVH- 434
           + +W+      G  +F   T ++DA  ++ + I+++  D   D S  K+   ++ LS   
Sbjct: 121 LDRWIADARDTGLVAFDTETTSLDAMQAELVGISMAIADNVADPSGTKIRAAYVPLSHKN 180

Query: 435 -----TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
                            ++ L  LK   E+E  LK+  N+KYD L+L RYGI  + F+D 
Sbjct: 181 GVGDLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSFDDT 240

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           ML+SYVLD+G  +H +  +++K+L +     K++  S ++++  D +   +   +A E++
Sbjct: 241 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRATHYAAEDA 300

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
           +V L+LWL+L+P+L    L  VYERL++P++ V+++ME  GI +D+ +L ++S E+++  
Sbjct: 301 DVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGA 360

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             LE+ IY L+GE+FN+ SPKQLGDILF K+    G+KTKTGQW T+A  LE +      
Sbjct: 361 ARLEDEIYTLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFE 420

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           + + I++WRQL+K+KSTY D+LP +++  T+RVHT YSLAST TGRL+S EPNLQNIP++
Sbjct: 421 LPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVR 480

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           T  G+KIR AFIS P  KLISADYSQIELR+LAH+A+I  L + FE+ +DIH M A+E+F
Sbjct: 481 TAEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMF 540

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV +E +  ++RR AK INF IIYGIS F LA QL I RSEA DYIK+YF RFPGI +Y+
Sbjct: 541 GVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYM 600

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           E  K   R  GYVETIFGRRI+Y EI S   S+R  NERAAINAPIQGSAAD+ RRAMI 
Sbjct: 601 ESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIK 660

Query: 907 VHKSLEDHKL--ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           +  +L +  L    +MLLQ+HDEL+FEV +E++  A  IIV  ME A +P + +RVPLKV
Sbjct: 661 IEPALAEAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKV 720

Query: 965 NIKVSNNWQEEN 976
           + + + NW E +
Sbjct: 721 DARAATNWDEAH 732


>gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
          Length = 892

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 457/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                             +D  A     
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHP-------------------------WDPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 279 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 314 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K  H+ K     L   G 
Sbjct: 358 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKAMHSAKGPVEALAERGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 462 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 581 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 639 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 875 VPLTVSIGVGRSWFDA 890


>gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
 gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
          Length = 948

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/988 (27%), Positives = 471/988 (47%), Gaps = 72/988 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++     +    H
Sbjct: 11  TSRGTLLVVDGHSLAFRAFFALPVENFSTSSGQATNAVWGFATMLSQVIDAEHPD----H 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFRN++ P YK  R   PE LL QLPL++    A G+  IE  G+E DD+
Sbjct: 67  LAVAFDVKGGTFRNQMLPQYKGTRDAAPEELLSQLPLIQQMLTALGVTYIEKPGYEGDDV 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   + ++ G+   ++S D+D  QL++    +          + +  + V +K+ + P
Sbjct: 127 IGTLASMGDQAGYRTLVLSGDRDAFQLINDDITVLYPGHHFKDLKHMTPDAVQEKYHVSP 186

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +   L AL G++ DNIPG+PG+G   AA  + +YG LE I+ +A  I  KK  E + E 
Sbjct: 187 AQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEQIIEHADEISGKK-GEALREN 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCD 295
            E  +L+R +  L  D+ + + +  L     +  +L      LEF  +  NRV  T++ D
Sbjct: 246 IEQVKLNRSVNALVRDLDLGVSVSDLTFGQVDAGQLDDLFTKLEFGVRTKNRVLKTFNAD 305

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             + +  V + +  E   +    +     T   + F  +             Q+   ER 
Sbjct: 306 KPSGD--VHESSKLELPHVEDVNDPHVVETWVQNHFPVV-------------QEHLHERH 350

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           ++ S                                    T   D           S   
Sbjct: 351 ERSSNDIPEFG-----------------------FEIDSSTRCTDKVKQ-------SWTL 380

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             + TS   E     L +    ++   +  + +++  L++ F+  H   + H  K    +
Sbjct: 381 YAEGTSKPGEASLSALMIAVHGEAIRIDVFSPDMVQCLQRLFDRYHHSMVVHGYKEHAHL 440

Query: 476 LHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSRKSSIPIDKI 533
           L   G+ +     D  L  Y+      +  +  +A  +L  +   +   + + ++  D+ 
Sbjct: 441 LGSIGVELPEPLFDTKLAGYLAHPDFHADTLEQVAAHFLDLHIEAQAEAATQGTLDFDEP 500

Query: 534 S--DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              DS+  E  +  + ++  L   L   L   +   + + ++ P+  V+  ME  G Q+D
Sbjct: 501 EENDSKNDELILTRTAIVGLLAEYLAGVLDKREQFGLLKSIELPVSQVLHGMEQVGAQVD 560

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  +++ +    +E  +  +GE+ NL SPKQL  ILF  +      KTK+G + 
Sbjct: 561 MARLVQMRDQLAADAAQAQETAWQFAGEQVNLQSPKQLQKILFEDMGLKPTKKTKSGSYT 620

Query: 652 TTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           T A  L+ +             +  +L  R+ +K+K     +L +  N+   R+HT +  
Sbjct: 621 TNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLK-QIVQTLIDATNRHDGRIHTTFEQ 679

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKI 764
               TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A ++  
Sbjct: 680 TVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGD 739

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F +  D H+ VA+ ++G+ ++ ++   R H K +++ + YG+S + LA QL+I 
Sbjct: 740 EALIEAFRSGKDFHKYVASLVYGIPVDDITSDQRSHVKAMSYGLAYGLSTYGLAQQLKIK 799

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA     +YF  F  +HEY+E   +  R+ GY ETIFGRR ++  + SP  ++R+  E
Sbjct: 800 PKEAESLKNQYFATFGKVHEYLESLVSSAREKGYTETIFGRRRYFPGLKSPNRAVRDAAE 859

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAA+NAPIQGSAADI + AMI  + +L++  L ++++LQIHDELV E+   E   A+ ++
Sbjct: 860 RAALNAPIQGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALV 919

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +ME A    + + VPL V+  + ++W
Sbjct: 920 KDAMEHA----VTMAVPLDVSTGIGSDW 943


>gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
 gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
          Length = 885

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/987 (32%), Positives = 495/987 (50%), Gaps = 117/987 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M ++  L L+DG+S  +R FYA  + +     HDGL  +A+  F  ML K+L +   +  
Sbjct: 1   MTEKQKLLLIDGNSITFRGFYALFMQTERFVNHDGLHTSAVFSFKRMLDKILDDVNPDK- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR E Y DYKA R K PE L  Q P V+     +GI   E++ +EA
Sbjct: 60  ---ILVAFDAGKKTFRTEKYSDYKAGRKKTPEELSEQFPYVKKLLDCYGIKHYELKNYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T +  AEK G+  TI++ D+DL QLV+  T +  TVK     E     H+ +K G
Sbjct: 117 DDIIGTMSKEAEKHGYETTIVTGDRDLTQLVTNQTTVALTVKGVTEIEYYTPNHLSEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P ++  L+ L GD+ DN PG+  +G KTA  LL +YG +EN                +
Sbjct: 177 ISPSQITDLKGLAGDASDNYPGVSKVGEKTALKLLNQYGTIEN----------------L 220

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E+ +  + S+    L  D  I +  ++L     +                         
Sbjct: 221 YEHIDEFKKSKMKEHLIEDKEIALTCKNLATIRRDA------------------------ 256

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                  P+ + +   +  G  IE   +   ++   +F       S++N+E++ +    E
Sbjct: 257 -------PLEIGLADIDFAGKNIEKLREFYQSMDFHKF------LSELNAEKSEEVSNEE 303

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L  + +    N    ++                 +ASF +     +   S         
Sbjct: 304 ELPSIVELTFENIDGQQL--------------NADNASFYLELADENYHTS--------- 340

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                   F    +  D   + S+D +            L++F EN++      + K   
Sbjct: 341 -------PFWGFALLSDGQCYVSKDVSLLKR------EPLREFLENKNKTLDVFDGKKTY 387

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYT-RKEILKSRKSSIP 529
           + L R GI     + D++L+SY+L++  +S+D+  + QK  +       E+         
Sbjct: 388 VSLKRLGIEAESIDFDLLLVSYLLNNTDNSNDLGQLCQKQGYFGVKSDDEVYGKGAKK-- 445

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            +  +D    EH       I  L   L  KL      H+Y  +++P+  V+++MEI GI+
Sbjct: 446 -EICADETFFEHLRSKVFAIAFLKQKLMQKLKDNSQDHLYFEIERPLSIVLAKMEIAGIK 504

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
            D++ L+ + +   + +  LE  IY  +GE FN++SPKQLG ILF KL  P   KTKTG 
Sbjct: 505 ADKETLETMGSRFKEKISDLESLIYQEAGETFNINSPKQLGTILFDKLGLPGAKKTKTG- 563

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T    LE++   D  I+ N+L +RQ +K+KSTY D L   ++ + ++VHT Y+   T 
Sbjct: 564 YSTAVGVLEKLRGND--IVDNVLLYRQFAKLKSTYIDGLIKVMD-QDEKVHTRYTQTLTT 620

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S+EPNLQNIP++ + G+KIR+AFI      ++ S+DYSQIELR+LAHI+K   + 
Sbjct: 621 TGRLSSVEPNLQNIPVRLEEGRKIRQAFIPSHQGWEIFSSDYSQIELRVLAHISKDENMQ 680

Query: 769 QVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           + F++  DIH   A +IFG++  ++V+P MRR AK +NF I+YGIS F LA  +   R +
Sbjct: 681 KAFKDDFDIHANTAMKIFGLSSPDEVTPNMRRQAKAVNFGIVYGISDFGLAQSIGCRRDQ 740

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +++ YF  FPG+  Y+ +     R  GYVET+F RR + + I S   + R+  ER A
Sbjct: 741 AKTFMETYFESFPGVKRYMTEIVELARNQGYVETLFKRRRYLEGIRSKNFNQRSFAERTA 800

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N PIQGSAADI + AMI + ++LE  +L  +MLLQ+HDEL+FE PEEEI    +++   
Sbjct: 801 MNTPIQGSAADIIKVAMIKMQETLEKEELKARMLLQVHDELIFEAPEEEIPVLEKLVPSV 860

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           M+ A    + L VPLKV       W +
Sbjct: 861 MDSA----VKLDVPLKVESGHGKTWFD 883


>gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
 gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 937

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/1006 (28%), Positives = 487/1006 (48%), Gaps = 110/1006 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    L ++DG S  +RAFYA P  +   D G   NA+ GF  ML  +++  R     +H
Sbjct: 8   EAPQRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQR----PTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+E Y +YKA R + P     Q+ L     +A GIP + ++G+EADDI
Sbjct: 64  VAVAFDLSGPTFRSEEYAEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP 176
           +AT +  AE+ G+   ++S D+D  QL+S  T +    K       +D + V+ K+G+ P
Sbjct: 124 VATLSARAEEAGWEAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAP 183

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +   L AL G++ DN+PG+PG+G   AA  L++YG+L+ +L +A  I  KK  E + E+
Sbjct: 184 AQYPELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKK-GEALREH 242

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  R +R+L  L  D+ + I LE + LE      +     AL+F ++  RV   +    
Sbjct: 243 LEDVRRNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERVFEVFGER- 301

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                                + +       E  P+        
Sbjct: 302 -------------------------------------VGEDAPPPEVEAAPE-------- 316

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +T+    +D++ ++  +  T+      +    +      P+        
Sbjct: 317 -----------FTEATTAEDVRAFLAAEAGTLLGVHVDVEGPALLPRRKVPV-------P 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
               T   V  +     +H + D    +     +++ +++        K  H++K     
Sbjct: 359 GTFGTPVGVALVGEHAGLHVTLDG---DAPDPALVAAVREALGEGGLAKAVHDLKRTLKA 415

Query: 476 LHR--YGISMRG-------FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILK 522
           L     G  +          +D++L +Y++   R    + ++A+  L       R+   +
Sbjct: 416 LAAPTEGDGLGPDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLAAPREPAQQ 475

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL----RPKLIVEKLLHVYERLDKPMID 578
             + +  +D    +  +     ++     +   L     P+++      + + L+ P+  
Sbjct: 476 RAQGTFDLDGGQAAADRAARAADAVRAAWVVRRLSTQFTPQVLDRGAQRLLQELEIPLSR 535

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY-----DLSGEKFNLSSPKQLGDIL 633
           ++++ME+ GI +D D L  +  + +    + +E+ +     +  G + NL SPKQL ++L
Sbjct: 536 LLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASVAEETGGMQVNLGSPKQLQEVL 595

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F +L  P   KTKTG         + +    +P ++N++  R  +K++ T  + L   + 
Sbjct: 596 FERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDATKLRQT-VEGLLETVA 654

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP--TK--KLISAD 749
               R+HT YS  +  TGRL+SL PNLQNIP++T+ G++IR  F++     +   L+SAD
Sbjct: 655 PDD-RIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGRRIREVFVADEVAGEQAVLLSAD 713

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE+RI+AH+++   L Q F    D+H  V +++FGV+ ++V+ + R   K +++ + 
Sbjct: 714 YSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLA 773

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+S F L+ QL+I   EA   +K YF RF G+ +Y+       RQ+GY  TI GRR + 
Sbjct: 774 YGLSSFGLSKQLKISVDEARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYL 833

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +++S    +R++ ERAA+NAPIQGSAADI +RAM+ V   LE+H LA+++LLQ+HDEL+
Sbjct: 834 PDLSSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELI 893

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            EVP  E+  A+ ++   M +A      L VPL V++    +W + 
Sbjct: 894 LEVPAAELEQATALLEERMGRAA----ELSVPLDVHVGRGRSWHDA 935


>gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2]
          Length = 892

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/976 (28%), Positives = 456/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                              D  A     
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPW-------------------------DPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 279 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 314 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K+ H+ K     L   G 
Sbjct: 358 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKVMHSAKGPVEALAERGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 462 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 581 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR   +     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 639 QNIPMRTEEGRRIREGVVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 875 VPLTVSIGVGRSWFDA 890


>gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
          Length = 890

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/976 (28%), Positives = 459/976 (47%), Gaps = 103/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                             +D  A     
Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHP-------------------------WDPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE         S    + D T +I+                   
Sbjct: 279 DTLEFRTLWDRVRALATE---------SDADGVDDDTLEISG------------------ 311

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 312 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 355

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K  H+ K     L   G 
Sbjct: 356 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKAMHSAKGPVEALAERGW 401

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 402 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 459

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 460 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 518

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 519 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 578

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 579 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 636

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 637 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 696

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 697 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 756

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 757 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 816

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 817 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 872

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 873 VPLTVSIGVGRSWFDA 888


>gi|303232660|ref|ZP_07319345.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
 gi|302481146|gb|EFL44221.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
          Length = 1126

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1037 (28%), Positives = 492/1037 (47%), Gaps = 80/1037 (7%)

Query: 6    HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
             + ++DG+S ++RAF+A        DG   NA+ GF NML K+ +              F
Sbjct: 102  TIAVIDGNSLMHRAFHAVRQPMVAPDGRATNALLGFFNMLIKMYRTFTPNG----IICAF 157

Query: 66   DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            D      R ++Y  YKA RP +   L  Q P+V+    A  IP  E+ G+E DDI+ T  
Sbjct: 158  DKGKPQIRIDMYEKYKAQRPPMDPSLHEQFPMVKELLSALNIPVCELAGWEGDDILGTLA 217

Query: 126  YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKW-GIPPEKMV 180
                  GF++ + + D+D+ QL S +  +  T K       +  E V   + GI P+ + 
Sbjct: 218  KQGSASGFSMMLFTGDRDIYQLASDSVTVVSTKKGVTDVAMMTPEDVDDLYHGITPQLVP 277

Query: 181  CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                L GD+ DNIPG+PGIG K AA L+ +YGNLE ++ +A  +   K  E++  + + A
Sbjct: 278  DFYGLKGDTSDNIPGVPGIGPKRAAQLIVQYGNLEAVIAHADEVPG-KMGESLRAHIDDA 336

Query: 241  RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---------------- 284
            RLS+KL  +RTD P+   +E     + +  R+     AL FT L                
Sbjct: 337  RLSKKLATIRTDAPLDFAIERCAFPNFDCERVAQAFLALGFTSLTTKLIHLDERTKTMDI 396

Query: 285  ----------INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334
                      + +        AA    V  D    +        ++ + TT K S  S  
Sbjct: 397  AGLMARHAKALRKAYAQQSIAAAAHAAVSSDDAAKDGNADNAAQDVMQHTTAKASDSSGS 456

Query: 335  SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
                 K  ++ +    F   ++ +++   +       + T          E I     + 
Sbjct: 457  DSSCRKEQADASLHNAFSAMVRAIAETVRSTAEIRSSLETHGSDAARADAEQIKQQLART 516

Query: 395  ITDTMDAFHSK-PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
             +D       + P+        +    +   E I I   +H ++D+  +   +  +   L
Sbjct: 517  SSDAAACMSQELPVLYGDEAKREVMRAAEAGEYIGIAHRLHNNEDTAAQTLFSLTLQLSL 576

Query: 454  -----KKF--------------FENEHFLKIGHNIKYDKLVLHRYG-----------ISM 483
                 K                  + H   +  + K    +++              +++
Sbjct: 577  ACATSKALCVFCNEAAYEVVCELISSHARMVTSDAKQLFSLVYPADSWRAARIDYAAVAI 636

Query: 484  RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQE 540
                D  L +Y+L+S  +S+D+  +  ++     Y ++ I  +       D    +  + 
Sbjct: 637  DAVFDTQLAAYLLNSDAASYDVDELLMQYAGVASYPQQPIGSAAAHGFATDDDQKALSEM 696

Query: 541  HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             A   +  +LQ    L   L++++   VY  ++ P+I V+  ME TG+ +D D+L + S 
Sbjct: 697  LACAKAQRVLQ--APLMYALMLDESYDVYCGIELPLICVLLDMERTGLHVDTDILHEQSM 754

Query: 601  EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTTAQDLE 658
             I++ +  +   ++   GE  N+ SP QL  +LF   + P+    KTK G + T A+ LE
Sbjct: 755  AINREINHMLATLHTDIGETINIDSPMQLSHVLFDVWQLPTKGLKKTKRGYFSTNAKTLE 814

Query: 659  QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
             ++  D+  ++ IL++R+ +K+KSTY D+LP  I     R+HT ++     TGRL+S +P
Sbjct: 815  TLSKQDDR-VQLILDYRERAKLKSTYLDALPAQIKPDG-RIHTTFNQTVAATGRLSSSDP 872

Query: 719  NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
            NLQNIP ++ LG ++R+AF        ++ DYSQIELR+LAH+++   L   F +  D H
Sbjct: 873  NLQNIPTRSQLGHRVRKAFTVADDSVFLTCDYSQIELRLLAHLSQDPHLIAAFNSGADFH 932

Query: 779  RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
               A+ IFG+  + V+PQ+R  AK +NF I+YG   F LA+ L+I R+ A + I +YF  
Sbjct: 933  AATASRIFGIEQDAVTPQLRSRAKAVNFGIVYGQQAFGLASSLKISRATAKEMIDKYFEV 992

Query: 839  FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            +P + E+++++  F R +GYV T++GR+ H + IN+    +R+  ER A+N P+QGSAAD
Sbjct: 993  YPCVREFLDESVAFARAHGYVPTMYGRKRHIEHINASNFQLRSFAERTAMNHPMQGSAAD 1052

Query: 899  ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            I + AMI V K L    L   ++LQIHDEL FEV   +    S+++  +ME      ++L
Sbjct: 1053 IIKLAMIEVEKRLRASSLRAHLVLQIHDELDFEVATADCDALSELVKDAMEHV----VSL 1108

Query: 959  RVPLKVNIKVSNNWQEE 975
            RVPL  +I  ++NW + 
Sbjct: 1109 RVPLIADISYASNWADA 1125


>gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
 gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
          Length = 883

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/983 (31%), Positives = 494/983 (50%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  + S                           ++  +L   +   ++ +   T DC + 
Sbjct: 222 DQIKAS---------------------------KIKEYLIRDKNNAILGKKLATIDCTSP 254

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +D+   + K  A +    R    +      LS+               L  +++
Sbjct: 255 ------VDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSE---------------LPDVEE 293

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +     +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 294 IDNKVQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 350

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + LKK  E+++  K   ++K + + L 
Sbjct: 351 Y--------------------VCDDVTLLQE--APLKKILEDKNIAKQVFDLKRNYVGLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R  I++    +DIML SY+ DS  ++ DI  +A  +        + I    K       +
Sbjct: 389 RLDITLSNVTDDIMLASYIADSENNARDIGVLANSYQESYVQSDEIIYGKGKKQ---HSV 445

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + +H+Y+ ++ P+  ++++MEI GI++   
Sbjct: 446 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQVHLYKNIEIPIAVILAKMEIAGIKVQAT 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 506 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTPAKKTKTGY--ST 563

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 564 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 623 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKIMQQA 862

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 863 A----QLDVPLIADANWGHNWYE 881


>gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden]
          Length = 865

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/966 (34%), Positives = 508/966 (52%), Gaps = 117/966 (12%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D    ++RA+YA P LS   +G+P+  + GF NML K ++       A++  V FD  
Sbjct: 11  IIDAYGLLFRAYYALPHLST-SNGVPIGGVYGFINMLLKYIE----VHTANYLVVAFDTG 65

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
              FR++IYP YK+NR K+PE L+ Q PL+R A  A  I   E+ G+EADD+IAT +   
Sbjct: 66  GKNFRHDIYPQYKSNRIKLPEDLISQFPLLREAVNALNISYEEVAGYEADDVIATLSKNY 125

Query: 129 EK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
            K +G  VT++++DKDL+QL+     ++D VK + I  + V  K+GI   K++   +LTG
Sbjct: 126 SKFDGIKVTVVTSDKDLLQLLEHNIHIFDPVKNKYIVEDDVQDKFGISSSKLLDFLSLTG 185

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DNIPG+PGIG KTAA LL  +G+L+N+L     I++ K RE+I+             
Sbjct: 186 DTSDNIPGVPGIGIKTAAKLLNNFGSLDNLLSQPHAIEKNKCRESII------------- 232

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
                                           +   +++R   T        + V LD N
Sbjct: 233 ------------------------------KYQDQAILSRQLLTL------CDTVNLDNN 256

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
             + +    +T+      +K  +  SL ++  KI                 +    N   
Sbjct: 257 IEKYRSRIPDTQ-KLVKFLKKYELQSLINKIGKIFKTDAFTVYQKSGYNNENSIKTNVIP 315

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y+     ++++ +++  +  G+ +  I         +   ++++S  +       K    
Sbjct: 316 YSS----EELKTFIENCKNEGTIALYIDIT-----DNTINSMSLSYKEGTILYINKEHIT 366

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
                                 L  +K  F  +H LK+ +++K    ++ +   ++  F+
Sbjct: 367 H--------------------ALDLIKPLFSLDHILKVMYDVKTLFKII-QEDTNITAFD 405

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI++MSY LD+G   H + +I  + +           K  I  + I+           ++
Sbjct: 406 DILIMSYSLDAGLHDHTLKNIIIRNID----------KHDITNENIT-----------AS 444

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L L   LR  L   +L  +Y R++KP+I+V+  ME  GI ID  +L ++S+  S  + 
Sbjct: 445 TLLSLHTALRRNLFTNQLCTIYYRIEKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKIS 504

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            LEE IY LSGE+FN++S +QL  ILF K+    G K  +G + T A+ L ++      I
Sbjct: 505 VLEEKIYKLSGEEFNIASSRQLSTILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEI 564

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
              IL+WR  +K+K+TY D L   I+  T RVHTFYS+ ST+TGRL+S  PNLQNIPI++
Sbjct: 565 ADEILKWRHFTKLKNTYTDVLAKQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIPIRS 624

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           + G  IR AFI+    KLISADYSQIELRI+AHIA +      F    DIH + A +IF 
Sbjct: 625 EEGNAIRNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIF- 683

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            N + +  ++RR AK+INF IIYGISPF LA QL I RSEA+ +I+ YF  +P I  YIE
Sbjct: 684 -NTQNIDKKLRRKAKSINFGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKSYIE 742

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             K + R +GY  T+FGR+    +INS   ++RN +ERAA+NAP+QG++ADI + +MI +
Sbjct: 743 DIKVYARTHGYTRTVFGRKCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSMIHL 802

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
              L+       M+LQ+HDEL+FEVPE+ +    ++I   ME      + L VPLKV+I 
Sbjct: 803 FDRLKT----GYMILQVHDELLFEVPEDHVDNTVKLIKEVME----GIVKLSVPLKVDIT 854

Query: 968 VSNNWQ 973
           + +NW 
Sbjct: 855 IGDNWG 860


>gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
 gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
          Length = 933

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/999 (28%), Positives = 451/999 (45%), Gaps = 121/999 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAFYA P+ +     G P NA+ GF +ML  LL++       +HFA
Sbjct: 29  RPRLLLIDGHSMAYRAFYALPVQNFATTTGQPTNAVYGFTSMLINLLRDE----DPTHFA 84

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    +FR E+Y DYK  R K P+    Q+ LV+    A  +P +EI+G+EADD+IA
Sbjct: 85  VTFDVSRASFRTEVYADYKGTRTKSPDEFRGQVDLVKEVLAALRVPVVEIEGYEADDVIA 144

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T T  A  +GF V I S D+D  QLV P   +   VK      ++  E V  K+G+PPE+
Sbjct: 145 TLTEQAVAQGFDVLISSGDRDAFQLVRPEVTVLYPVKGVSELTRMTPEAVEAKYGVPPER 204

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G+S DN+PG+PG+G KTAA  +       N+      +         +  A+
Sbjct: 205 YPDLAALVGESSDNLPGVPGVGAKTAAKWI-------NLYDGLDGV---------IANAD 248

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                                     +   G  L + L ++   + +N +       A  
Sbjct: 249 LI------------------------KGKAGESLRAHLDSVIRNRRLNALVHDLTLSATI 284

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E V    +  +             T     +F  L D+         P+      +   
Sbjct: 285 PELVRRAWDREQ-----------VHTVFDGLEFRVLRDRLFATLESAEPEAEAGFGVDG- 332

Query: 359 SQYPINNDSYTKIVNTKDIQQWV-QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                       ++   ++  W+    +                   +   +A++  D  
Sbjct: 333 -----------AVLLAGEVAPWLTDHAQDRTGLHVTGEWSRG---SGEVTGLALAGADG- 377

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V      L++  + +              L  +  +    K+ H++K     L 
Sbjct: 378 ------VAAWIDPLTLEPADE------------QALAAWLADPDRPKVAHDVKGPSHALL 419

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK---- 532
             G ++ G   D  L +Y+    + S+D+A +A + L    +    +  +   +D+    
Sbjct: 420 ARGWTLAGVVLDTALAAYLCRPDQRSYDLADLAVRHLKRELRAEGSTGGADADVDEQLTL 479

Query: 533 --------ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
                          E  +  +  I +L  +L  +L       +   ++ P++ V++  E
Sbjct: 480 DGSDGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGTRLLHEVELPLVAVLAAQE 539

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D +LL  + A  ++ +   +   Y++ G + NL SPKQL  +LF +L  P   +
Sbjct: 540 RVGIAVDDELLADLEARFAERVAQAQAQAYEVIGTEINLGSPKQLQTVLFEQLDMPKTKR 599

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTG               ++P + ++LE R  S+++ T  + L   +     R+HT Y 
Sbjct: 600 TKTGYTTDADALAALFVKTEHPFLAHLLEHRDASRLRQT-VEGLRKSV-ADDGRIHTTYQ 657

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-------KKLISADYSQIELRI 757
                TGRL+S +PNLQNIPI+T+ G++IR AF+  P        + L++ADYSQIE+RI
Sbjct: 658 QMIAATGRLSSTDPNLQNIPIRTEEGRRIREAFVVGPDAGAGDGYECLLTADYSQIEMRI 717

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH++    L   F +  D+HR V + +FGV    V+P+MR   K +++ + YG+S F L
Sbjct: 718 MAHLSGDEGLISAFTSGEDLHRFVGSRVFGVAPVDVTPEMRAKIKAMSYGLAYGLSAFGL 777

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           + QL+I   EA D +  YF RF G+ +Y+       R+ G+ ETI GRR +  ++ S   
Sbjct: 778 SNQLKISTEEAKDLMDEYFQRFGGVRDYLHGVVEEARRTGWTETIMGRRRYLPDLASDNR 837

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             R + ER A+NAPIQGSAADI + AM+ +   L +  L +++LLQ+HDELV EV   E 
Sbjct: 838 QRREMAERMALNAPIQGSAADIIKVAMLDLDAGLREAGLRSRLLLQVHDELVLEVARGER 897

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
               +++  +M  A     +L VPL V++ V  +W E  
Sbjct: 898 EPLEELVRATMAGAA----DLAVPLDVSVGVGRSWHEAG 932


>gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG]
          Length = 881

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/989 (31%), Positives = 492/989 (49%), Gaps = 123/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAF+A           DGL  NAI  F NML  +L++ + ++ 
Sbjct: 1   MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDA- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 60  ---ALVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+  TI++ D+DL QL +  T +  TVK     E    EHV +K G
Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL++YG++E                N+
Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIE----------------NL 220

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               +  + S+               E LI    +  +             +++   T D
Sbjct: 221 YANIDAMKTSKM-------------KESLIN---DKDKAY-----------LSKQLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    PV +D+                D        + L D  +K+N         L+
Sbjct: 254 RDA----PVTIDLA---------------DVKYNGPDLAKLRDFYTKMN-----MNSLLK 289

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           ++      P     Y+ + +    Q  +   +T    +F+I     +   ++ +   I T
Sbjct: 290 KIGGDVAKPSQPVHYSVLDD----QSILALTKTTEPLTFEIEMLADNYHTAEQVGFFIGT 345

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            ++          +  D+S+ T  +                K+  + +      + K + 
Sbjct: 346 KEE--------TYVSTDVSLLTIPEVA--------------KWLGDSNRDLTVFDGKRNI 383

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           +  HR G+ +     D++L SY+++   +S+D+  IA+      L        K  K  +
Sbjct: 384 VAAHRLGLKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQV 443

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P DK+   Q        S  +  L   L   L  ++   ++  ++ P+  V+++MEI GI
Sbjct: 444 PEDKLLFEQF----ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   LK +  E S+++  LEE IY  +G KFNL+SPKQLG++LF KL  P   KTKTG
Sbjct: 500 TLNAQTLKDMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+       +PI+++IL++R  +K+ STY   L         ++HT Y    T
Sbjct: 560 Y--STSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPD-HKIHTRYLQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PN+QNIP + + G+ IR+AF+   P  ++ S+DYSQIELR+L+HI+    +
Sbjct: 617 QTGRLSSVDPNMQNIPARDE-GKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENM 675

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            Q F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + LA  + I R 
Sbjct: 676 QQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGISRK 735

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF ++P +H+Y+E      R++GYVET+F RR +  +I+S   ++R   ER 
Sbjct: 736 QAKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERT 795

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE P  E+    Q++  
Sbjct: 796 AMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPK 855

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    ++L VPLKV       W + 
Sbjct: 856 IMDSA----VSLAVPLKVESHYGPTWFDA 880


>gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 881

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/989 (31%), Positives = 493/989 (49%), Gaps = 123/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAF+A           DGL  NAI  F NML  +L++ + ++ 
Sbjct: 1   MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDA- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 60  ---ALVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+  TI++ D+DL QL +  T +  TVK     E    EHV +K G
Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL++YG++E                N+
Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIE----------------NL 220

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               +  + S+               E+LI    +  +             +++   T D
Sbjct: 221 YANIDAMKTSKM-------------KENLIN---DKDKAY-----------LSKQLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    PV +D+                D        + L D  +K+N         L+
Sbjct: 254 RDA----PVTIDLA---------------DVKYNGPDLAKLRDFYTKMN-----MNSLLK 289

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           ++      P     Y+ + +    Q  +   +T    +F+I     +   ++ +   I T
Sbjct: 290 KIGGDVAKPSQPVHYSVLDD----QSILALTKTTEPLTFEIEMLADNYHTAEQVGFFIGT 345

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            ++          +  D+S+ T  +                K+  + +      + K + 
Sbjct: 346 KEE--------TYVSTDVSLLTIPEVA--------------KWLGDSNRDLTVFDGKRNI 383

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           +  HR G+ +     D++L SY+++   +S+D+  IA+      L        K  K  +
Sbjct: 384 VAAHRLGLHLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQV 443

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P DK+   Q        S  +  L   L   L  ++   ++  ++ P+  V+++MEI GI
Sbjct: 444 PEDKLLFEQF----ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   LK +  E S+++  LEE IY  +G KFNL+SPKQLG++LF KL  P   KTKTG
Sbjct: 500 TLNAQTLKDMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+       +PI+++IL++R  +K+ STY   L         ++HT Y    T
Sbjct: 560 Y--STSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPD-HKIHTRYLQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PN+QNIP + + G+ IR+AF+   P  ++ S+DYSQIELR+L+HI+    +
Sbjct: 617 QTGRLSSVDPNMQNIPARDE-GKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENM 675

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            Q F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + LA  + I R 
Sbjct: 676 QQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGISRK 735

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF ++P +H+Y+E      R++GYVET+F RR +  +I+S   ++R   ER 
Sbjct: 736 QAKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERT 795

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE P  E+    Q++  
Sbjct: 796 AMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPK 855

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    ++L VPLKV       W + 
Sbjct: 856 IMDSA----VSLAVPLKVESHYGPTWFDA 880


>gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459]
 gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
          Length = 875

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/977 (32%), Positives = 485/977 (49%), Gaps = 110/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  AE +G  V II+ D+DL QL S  T +Y T K                   +  ++ 
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKG------------------IADMET 158

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T +++     +          L+   G+  + +     + +K   + + E+  T     
Sbjct: 159 NTPETLKEKYNLTPQQIIDMKGLM---GDSSDNIPGIPGVGEKTALKLLHEFGGT----- 210

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                     +   LE    E+ +G +L   +   +   ++++   T + D+    P+  
Sbjct: 211 ----------VESVLE--HAEEISGKKLKEKVLENKELAILSKELATINVDS----PIEC 254

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            + +T+  G   E  I     +K   F++L         E+T +              + 
Sbjct: 255 TVESTKYDGYQTEKVIP---LLKEMNFTTLLKNIEGDTPEETKE--------------LK 297

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             S+  +         +++    G  +  +  +  +   +  I                 
Sbjct: 298 ELSFEIVTE-------LKEKHFGGKTALYVELENDNYHTANFIG---------------- 334

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L+VH+SQ +      T E     +K+ E++   K+ ++ K   + ++R G+++ 
Sbjct: 335 ------LTVHSSQGTYFFTKETAESSEVFRKWVESDQ-TKVVYDAKKTMVAMNRIGLAIS 387

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQ 539
           G   DIML SY+L+   S  D  S+A +      +       K  K S P + I    V 
Sbjct: 388 GITFDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESI----VA 443

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  I  L   L   L   + L + E L+ P+  V+++ME+ G+ +D + L+ + 
Sbjct: 444 AHLARKAVAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMK 503

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL  P+  KTKTG   +TA D+ +
Sbjct: 504 VELAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADVLE 561

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PN
Sbjct: 562 SLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPN 621

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH
Sbjct: 622 LQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIH 681

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  
Sbjct: 682 TKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVS 741

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAAD
Sbjct: 742 YPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAAD 801

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L
Sbjct: 802 IIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VEL 857

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+    + W + 
Sbjct: 858 SVPLKVDSAFGDTWYDA 874


>gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
 gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
          Length = 875

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/977 (31%), Positives = 477/977 (48%), Gaps = 110/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  AE +G  V II+ D+DL QL S  T +Y T K                   +  ++ 
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKG------------------IADMET 158

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T +++     +          L+   G+  + +     + +K   + + E+  T     
Sbjct: 159 NTPETLKEKYNLTPEQIIDMKGLM---GDSSDNIPGIPGVGEKTALKLLHEFGGTV---- 211

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                                      ++   + +   KL  +V    +    + E   +
Sbjct: 212 -------------------------ESVLEHAEEISGKKLKEKVLENKELAILSKELATI 246

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           ++++     I    E  +    +T +   L  + +     +  +    E  ++L +    
Sbjct: 247 NVDSP----IECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEEAKELKELSF- 301

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                +IV     + +       G  +  +  +  +   +  I                 
Sbjct: 302 -----EIVTELKEKHF------GGKTALYVELENDNYHTANFIG---------------- 334

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L+VH+SQ +      T E     +++ E+E   K+ ++ K   + ++R G+++ 
Sbjct: 335 ------LTVHSSQGTYFFTKETAENSEAFREWVESEQ-TKVVYDAKKTMVAMNRIGLAIS 387

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQ 539
           G   DIML SY+L+   S  D  S+A +      +       K  K S P + I    V 
Sbjct: 388 GITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAVYGKGAKRSTPEESI----VA 443

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  I  L   L   L   + L + E L+ P+  V+++ME+ G+ +D + L+ + 
Sbjct: 444 SHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMK 503

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL  P+  KTKTG   +TA D+ +
Sbjct: 504 VELAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADVLE 561

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PN
Sbjct: 562 SLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPN 621

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH
Sbjct: 622 LQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIH 681

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  
Sbjct: 682 TKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVS 741

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAAD
Sbjct: 742 YPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAAD 801

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L
Sbjct: 802 IIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VEL 857

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+    + W + 
Sbjct: 858 SVPLKVDSAFGDTWYDA 874


>gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300]
 gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300]
          Length = 889

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/987 (33%), Positives = 486/987 (49%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        S
Sbjct: 14  DKKKLLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PS 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 70  HVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K GI 
Sbjct: 130 IIGTLGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGIT 189

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  IG KT   LL E+G+L                E I E
Sbjct: 190 PAQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSL----------------EGIYE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T + +
Sbjct: 234 NIDGMKASK------------------MKENLINDKEQAFL---------SKTLATIETN 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + ++     G  +E        +   Q      Q   ++S   P+ L    +
Sbjct: 267 A----PIEIGLDDLLYSGSDVENLGKFYDEMGFKQLK----QALNVSSTDAPESLDFTIV 318

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            ++SQ  ++ +S                        F       +      +  A S  D
Sbjct: 319 DQVSQDMLSANS-----------------------IFHFELFGENYHTDDLVGFAWSCGD 355

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L +E    LK+F E        ++ K  K++
Sbjct: 356 K--------------------LYATDKLELLQE--PILKEFLE--KTPLKVYDFKKAKVL 391

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R  ++++    D  L  Y+L S   +++I++IA  +      +      K  K +IP 
Sbjct: 392 LNRLDLNLQAPAFDSRLAKYLL-STVENNEISTIANLYGQTYLADDEIFYGKGVKKAIP- 449

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI++
Sbjct: 450 ---EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 506

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GEKFN++SPKQLG +LF KL  P     KT   
Sbjct: 507 KKETLLEMQAENELIIEKLTQEIYELAGEKFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGK-IHTRYVQDLTQT 625

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 626 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 685

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 686 AFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 745

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 746 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 805

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L +    TKMLLQ+HDE+V EVP+ E+     ++  +M
Sbjct: 806 NSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAIKVLVKQTM 865

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 866 EEA----IQLSVPLIADENEGATWYEA 888


>gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054]
          Length = 895

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/976 (26%), Positives = 440/976 (45%), Gaps = 95/976 (9%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  YRAF+A P+ +     G   NA+ GF +ML   +++ R     +H AV FD
Sbjct: 1   MLLDGHSMAYRAFFALPVENFSTATGQHTNAVYGFASMLANTVRDER----PTHLAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR+  YP+YKANR   P+    Q+PL+     A  +P I  + FEADD+IAT   
Sbjct: 57  LSRQTFRSAEYPEYKANRSATPDEFRSQIPLIGELLDAMRVPRITAENFEADDVIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            A  EGF V +++ D+D +QLV+    +    K      +   E V +K+G+ P++   L
Sbjct: 117 AAAAEGFEVLVVTGDRDSLQLVTDDVTVLYPTKGVSELTRYTPEKVAEKYGVRPDQYPDL 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+PGIPG+G KTAA  + +YG+   ++ +A  +K K               
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWVNQYGSFAALVEHADEVKGKI-------------- 222

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                     G +L   L +++  + +  +    +      +  
Sbjct: 223 --------------------------GEKLREHLDSVKRNRFLTELVRDVELPLGVAQLE 256

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
               +  E   +    E             +  D+ + I+          E     +   
Sbjct: 257 RAPFDKDEVARLMEALEFRN---------PNFRDRVAGIDPAGAEAAAAPEVPTGPAVDG 307

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                   +     +  W+++                DA  +     + +    + +   
Sbjct: 308 ------DLLTEPGALADWLERH------------TGEDARTALAADYSWALGSGEVEQ-- 347

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                 I L+  T+        L +        +  +    K  H  K         G S
Sbjct: 348 ------IALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKALHIAKQVMRAFAERGWS 401

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQV 538
             G   D  L +Y+   GR +  +  +A+++L  +        ++ + S   D+   +  
Sbjct: 402 FAGVTADTALAAYLEKPGRRAFTLDVLAEEYLGRSLAPATAQAETGQLSFDADEPDPTAG 461

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            +  +  +  +  L  L   +L     + ++  ++ P+ +++++ME  GI  D++ L+ +
Sbjct: 462 AQALMTRARAVHDLAGLFDTRLAEVGAVELFHDMELPIAELLARMERHGIAADREWLRGL 521

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            A+ +  +    E  +  +G +FNL SPKQL +ILF  L  P   K KTG          
Sbjct: 522 EAQFAAEIQRCVEEAHAAAGREFNLGSPKQLQEILFGDLGLPKTKKIKTGYTTDADALTW 581

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                 N +   +L  R  +K+++T  + L   ++ +  R+HT ++     TGRL+S +P
Sbjct: 582 LATQTTNELPVILLRHRDQAKLRTT-VEGLLKTVSPQG-RIHTTFNQMVAATGRLSSQDP 639

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIP++T+ G+ IRRAF+       L++ADYSQIELRI+AH+++   L + F +  D+
Sbjct: 640 NLQNIPVRTEEGRAIRRAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDL 699

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H  VA+++F V    V  +MRR  K +++ + YG+S + L+ QL I  +EA   +  YF 
Sbjct: 700 HTTVASQVFAVAPADVDAEMRRKIKAMSYGLAYGLSAYGLSQQLGIKPAEAQGLMDTYFE 759

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF G+ +Y+       R  GY ET+ GRR +  ++ S     R + ER A+NAPIQGSAA
Sbjct: 760 RFGGVRDYLHNVVEEARAVGYTETLLGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAA 819

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V ++L    L ++MLLQ+HDE+V EV   E      ++   M  A      
Sbjct: 820 DIVKIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEALVREQMAGA----YP 875

Query: 958 LRVPLKVNIKVSNNWQ 973
           LR PL V++    +W+
Sbjct: 876 LRAPLDVSVGAGADWE 891


>gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175]
 gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220]
 gi|332312007|gb|EGJ25102.1| DNA polymerase I [Listeria monocytogenes str. Scott A]
          Length = 875

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/977 (32%), Positives = 485/977 (49%), Gaps = 110/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  AE +G  V II+ D+DL QL S  T +Y T K                   +  ++ 
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKG------------------IADMET 158

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T +++     +          L+   G+  + +     + +K   + + E+  T     
Sbjct: 159 NTPETLKEKYNLTPEQIIDMKGLM---GDSSDNIPGIPGVGEKTALKLLHEFGGT----- 210

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                     +   LE    E+ +G +L   +   +   ++++   T + D+    P+  
Sbjct: 211 ----------VESVLE--HAEEISGKKLKEKVLENKELAILSKELATINVDS----PIEC 254

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            + +T+  G   E  I     +K   F++L         E+T +              + 
Sbjct: 255 TVESTKYDGYQTEKVIP---LLKEMNFTTLLKNIEGDTPEETKE--------------LK 297

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             S+  +         +++    G  +  +  +  +   +  I                 
Sbjct: 298 ELSFEIVTE-------LKEKHFGGKTALYVELENDNYHTANFIG---------------- 334

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L+VH+SQ +      T E     +K+ E++   K+ ++ K   + ++R G+++ 
Sbjct: 335 ------LTVHSSQGTYFFTKETAESSEVFRKWVESDQ-TKVVYDAKKTMVAMNRIGLAIS 387

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQ 539
           G   DIML SY+L+   S  D  S+A +      +       K  K S P + I    V 
Sbjct: 388 GITFDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESI----VA 443

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  I  L   L   L   + L + E L+ P+  V+++ME+ G+ +D + L+ + 
Sbjct: 444 AHLARKAVAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMK 503

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL  P+  KTKTG   +TA D+ +
Sbjct: 504 VELAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADVLE 561

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PN
Sbjct: 562 SLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPN 621

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH
Sbjct: 622 LQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIH 681

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  
Sbjct: 682 TKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVS 741

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAAD
Sbjct: 742 YPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAAD 801

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L
Sbjct: 802 IIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VEL 857

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+    + W + 
Sbjct: 858 SVPLKVDSAFGDTWYDA 874


>gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 913

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/982 (29%), Positives = 469/982 (47%), Gaps = 92/982 (9%)

Query: 15  FIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFR 73
             +RAFYA P+ +     G   NA+ GF +M   LL+N R     +H AV FD P  TFR
Sbjct: 1   MAFRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLENER----PTHVAVAFDLPGGTFR 56

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
            E Y +YK  R + P+  L Q+ L+    +A G+ A+   G+EADDI+AT    A+ EG 
Sbjct: 57  TEEYAEYKGTRDETPQPFLGQVELIEEVLEAMGVKALTAPGYEADDILATLAASAQTEGM 116

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
            V + S D+D  Q V+    +   VK      ++    V  ++G+ PE+   L AL G++
Sbjct: 117 EVLLCSGDRDSFQTVTERCTVLYPVKGVSTLRRMTPAEVEGRYGVTPERYPHLAALVGET 176

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DN+PG+PG+G KTAA  +  Y  L+ ++ +A +IK  K  +++ ++ +    +R+L  L
Sbjct: 177 SDNLPGVPGVGPKTAAKWINLYDGLDGVIAHADQIKG-KAGQSLRDHLDDVMRNRRLNHL 235

Query: 250 RTDVPITIPL-EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
            TD+ + +   + L +   +   L    +ALEF  L  R                     
Sbjct: 236 LTDLDLGVAPRKDLRVSGADRADLARVFEALEFRTLHQR--------------------- 274

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
                            ++T  F+  S+    +  E +     LE L+  S         
Sbjct: 275 ----------------ALRTLTFTDTSNHAEPVEGEASGPLGALESLELASLGHD----- 313

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
              +  + + QW++                 D   S+ + + +           + +   
Sbjct: 314 ---LAARGLSQWLE-----------TNLSADDGNGSRLLGVDV----VGVLKPVEGDAAL 355

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-E 487
           + LS      +     +  E  + L +   +    K+  + K     L   G++M G   
Sbjct: 356 VSLSDGVRAVAIDLTKILPEDEAALAELLADVERPKLVADAKGSWHALRARGLTMDGVVA 415

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR----------KSSIPIDKISDSQ 537
           D  L  Y+    + S+D+ ++ Q+WL      + + +          +S+  +D ++   
Sbjct: 416 DPSLAGYLCRPEQRSYDVDTLTQRWLGIDLAVVGEGQNQADAGSSQSQSAFDLDALASDA 475

Query: 538 VQEH---AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           V      +   + V+L L ++L  ++     L ++  L+ P+   ++ ME  GI +D  +
Sbjct: 476 VPAAHLASARRAAVLLPLQVVLDEQMADRDALGLFADLEMPVAATLTVMEDVGIAVDDAV 535

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L     E+   +    E  Y  +G + NLSSPKQL  +LF +LK P   KTKTG      
Sbjct: 536 LAVRETELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTDAE 595

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                     +P ++N+LE R   K++ T  + L   I     R+HT +      TGRL+
Sbjct: 596 ALAGLYAKTSHPFLENLLEHRDAIKLRQT-VEGLRKAIQSDG-RIHTTFQQTIAATGRLS 653

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIP + + G +IR+AF        L++ADYSQIE+RI+AH++    L + F +
Sbjct: 654 STDPNLQNIPARNEEGMRIRQAFTVGEGYECLMTADYSQIEMRIMAHLSGDQALIEAFRS 713

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR VAA + G++++ V+ Q R H K +++ + YG+S F LA QL I  +EAAD   
Sbjct: 714 GEDLHRYVAALVHGIDVDDVTAQQRSHVKAMSYGLAYGLSTFGLARQLGIGNAEAADLRN 773

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF  +H+Y+E      R++GY +T+FGRR +  ++ S     R + ERAA+NAPIQ
Sbjct: 774 AYFARFGRVHDYLESVVEQARRDGYTQTMFGRRRYLPDLTSDNRQRREMAERAALNAPIQ 833

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI V ++L +  L++++LLQIHDEL+ EV   E+     ++   M  A  
Sbjct: 834 GSAADIVKKAMIDVDRALSEQGLSSRVLLQIHDELLVEVASAEVEAVETLLKEQMGGAA- 892

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
               L VPL V +     W+E 
Sbjct: 893 ---ELSVPLDVAVGRGRTWREA 911


>gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262]
 gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262]
          Length = 875

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/977 (31%), Positives = 477/977 (48%), Gaps = 110/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  AE +G  V II+ D+DL QL S  T +Y T K                   +  ++ 
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASRKTTVYITKKG------------------IADMET 158

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T +++     +          L+   G+  + +     + +K   + + E+  T     
Sbjct: 159 NTPETLKEKYDLTPSQIIDMKGLM---GDSSDNIPGIPGVGEKTALKLLHEFGGTV---- 211

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                                      ++   + +   KL  +V    +    + E   +
Sbjct: 212 -------------------------ESVLEHAEEISGKKLKEKVLENKELAILSKELATI 246

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           ++++     I    E  +    +T +   L  + +     +  +    E  ++L +    
Sbjct: 247 NVDSP----IECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTAEEAKELKELSF- 301

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                +IV     Q +       G  +  +  +  +   +  I                 
Sbjct: 302 -----EIVTELKEQHF------GGKTALYVELENDNYHTANFIG---------------- 334

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L+VH+SQ +      T E  +  + + E++   K+ ++ K   + ++R G +++
Sbjct: 335 ------LTVHSSQGTYFFTKETAEKSAVFRNWVESDE-TKVVYDAKKTMVAMNRIGFAIK 387

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQ 539
           G   DIML SY+L+   S  D  S+A +      +       K  K S P + I    V 
Sbjct: 388 GVTFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAIYGKGAKRSTPEENI----VA 443

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  I +L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ + 
Sbjct: 444 AHLARKAVAIAELEKRLVDDLEENEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLENMK 503

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG   +TA D+ +
Sbjct: 504 VELAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTGY--STAADVLE 561

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PN
Sbjct: 562 SLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPN 621

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH
Sbjct: 622 LQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIH 681

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  
Sbjct: 682 TKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVS 741

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAAD
Sbjct: 742 YPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAAD 801

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AMI + + L+   L  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L
Sbjct: 802 IIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VEL 857

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+    + W + 
Sbjct: 858 SVPLKVDSAFGDTWYDA 874


>gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
          Length = 877

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/990 (31%), Positives = 495/990 (50%), Gaps = 129/990 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ ++ L L+DGSS  +RAF+A        +  +GL  NAI  F  ML  L++       
Sbjct: 1   MENKDRLLLIDGSSVAFRAFFALYNQIDRFKAPNGLHTNAIFAFHTMLSSLMERIE---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  +EA
Sbjct: 57  PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116

Query: 118 DDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKMAEAPIVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+              
Sbjct: 177 MGLTPAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  ++ + S+                           LI+  K + F   +++   T
Sbjct: 224 ---ENVDSLKASKM-----------------------KENLIAD-KEMAF---LSQQLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++ T  KG  ++        +  +QF S              + L 
Sbjct: 254 INTKA----PIEIGLDDTLLKGKKVDELSQFYDEMGFAQFKS--------------KLLA 295

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
               +   +  ++   +  + +    +      +      F + T   +    + +A A 
Sbjct: 296 EAGGEVTDEKVVDEIDFEIVTDGSISE------KVNADDFFYLETLGENYHREQIVAFAW 349

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +                          K  ++K I            F +  ++ K 
Sbjct: 350 GNAE--------------------------KIYVSKNI-----DLLTKMKFPENTYDFKK 378

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ----KWLSYTRKEILKSRKS 526
           ++++L    I +     D ML  Y++ S    + I++IA+      L+   +   K  K 
Sbjct: 379 NRVLLSHLDIELPLVKFDAMLAKYLI-STTEDNKISTIARLFNSGHLATDEEIFGKGTKI 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P     D+ + EH      V+      +  +L+  +  H+   ++ P+ +V+++MEIT
Sbjct: 438 ALP----DDAVLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEIT 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI + Q+ L+++ AE  + L SL   IYDL+GE+FN++SPKQLG ILF KL+ P G KTK
Sbjct: 494 GIAVSQNTLEEIGAENEEKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   +TA D+ +     +P++  ILE+RQ++K++STY   L   I    + +HT Y   
Sbjct: 554 TGY--STAVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGK-IHTRYVQD 610

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S++PNLQNIP++ + G+KIR+AF+      L+S+DYSQIELR+LAHI+    
Sbjct: 611 LTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEH 670

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F++  DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F LA  L I R
Sbjct: 671 LIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITR 730

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            +A +YI+ YF R+PGI  Y+E      R  G+VET+  RR    +IN+   ++R   ER
Sbjct: 731 KDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAER 790

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI++ K+L      +K+LLQ+HDE++ +VP EE+     ++ 
Sbjct: 791 TAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKALVK 850

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPLKV+      W E 
Sbjct: 851 QTMEEA----IELAVPLKVDENTGKTWYEA 876


>gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/976 (28%), Positives = 456/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ +PP +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + +                  L  L             D  A     
Sbjct: 244 RNRKLNALVRDLDLDLT-----------------LAELARHPW--------DPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++   + TE D D   +      +S                          
Sbjct: 279 DTLEFRTLWDRVRVLATESDADGVDEVDDTLEISG------------------------- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++  + +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 314 --------TVLEPRTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K+ H+ K     L   G 
Sbjct: 358 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKVMHSAKGPVEALAERGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E  +       +D   D   + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGE-AEENSDQAMLDFGEDHFAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 462 -SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   +E  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 581 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 639 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 875 VPLTVSIGVGRSWFDA 890


>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
 gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I
 gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
          Length = 877

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/990 (31%), Positives = 495/990 (50%), Gaps = 129/990 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ ++ L L+DGSS  +RAF+A        +  +GL  NAI  F  ML  L++       
Sbjct: 1   MENKDRLLLIDGSSVAFRAFFALYNQIDRFKAPNGLHTNAIFAFHTMLSSLMERIE---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  +EA
Sbjct: 57  PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKMAEAPNVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+              
Sbjct: 177 MGLTPAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLY------------- 223

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E  ++ + S+                           LI+  K + F   +++   T
Sbjct: 224 ---ENVDSLKASKM-----------------------KENLIAD-KEMAF---LSQQLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++ T  KG  ++        +  +QF S              + L 
Sbjct: 254 INTKA----PIEIGLDDTLLKGKKVDELSQFYDEMGFAQFKS--------------KLLA 295

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
               +   +  ++   +  + +    +      +      F + T   +    + +A A 
Sbjct: 296 EAGGEVTDEKVVDEIDFEIVTDGSISE------KVNADDFFYLETLGENYHREQIVAFAW 349

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +                          K  ++K I            F +  ++ K 
Sbjct: 350 GNAE--------------------------KIYVSKNI-----DLLTKMKFPENTYDFKK 378

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ----KWLSYTRKEILKSRKS 526
           ++++L    I +     D ML  Y++ S    + I++IA+      L+   +   K  K 
Sbjct: 379 NRVLLSHLDIELPLVKFDAMLAKYLI-STTEDNKISTIARLFNSGHLATDEEIFGKGTKI 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P     D+ + EH      V+      +  +L+  +  H+   ++ P+ +V+++MEIT
Sbjct: 438 ALP----DDAVLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEIT 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI + Q+ L+++ AE  + L SL   IYDL+GE+FN++SPKQLG ILF KL+ P G KTK
Sbjct: 494 GIAVSQNTLEEIGAENEEKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   +TA D+ +     +P++  ILE+RQ++K++STY   L   I    + +HT Y   
Sbjct: 554 TGY--STAVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGK-IHTRYVQD 610

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S++PNLQNIP++ + G+KIR+AF+      L+S+DYSQIELR+LAHI+    
Sbjct: 611 LTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEH 670

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F++  DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F LA  L I R
Sbjct: 671 LIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITR 730

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            +A +YI+ YF R+PGI  Y+E      R  G+VET+  RR    +IN+   ++R   ER
Sbjct: 731 KDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAER 790

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI++ K+L      +K+LLQ+HDE++ +VP EE+     ++ 
Sbjct: 791 TAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKVLVK 850

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPLKV+      W E 
Sbjct: 851 QTMEEA----IELAVPLKVDENTGKTWYEA 876


>gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
 gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
          Length = 872

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/983 (28%), Positives = 482/983 (49%), Gaps = 128/983 (13%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L+  + E    +  V F
Sbjct: 4   KIVLIDGHSILNRAFYGVPDLTN-SEGLHTNAVYGFLNIMFKILEEEKPE----YLTVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+E++ +YK  R  + + L  Q+P+++   QA G+  IE  G EADD++ T  
Sbjct: 59  DVHAPTFRHEMFAEYKGTRKPMADELRQQVPVIKEVLQAMGVKTIEKAGLEADDLLGTLA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
              E+ G  V++IS D+DL+QL +    +     +      E      V  ++ + PE+ 
Sbjct: 119 KRCEEMGMEVSVISGDRDLLQLATEHVKIRIPKTKQGKTEIEDYYAADVKARYQVTPEEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY--A 237
           + L+AL GD+ DNIPG+P                          I +K   + I EY   
Sbjct: 179 IDLKALMGDTSDNIPGVPS-------------------------IGEKTATKIITEYGSI 213

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A                       + +   PR    L        +++V  T   +A 
Sbjct: 214 ENAY--------------------AHVTELKPPRASKALSEHYDLAQMSKVLATIHVNA- 252

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                  D +  I  ++   L  + + +  ++   K  L R + 
Sbjct: 253 -----------------------DFEYEIADAKLGDLYTEEAYVYFQRLQFKNLLSRFEV 289

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF-----HSKPIAIAIS 412
            +      D++  + +  + ++  +  +           DT +        +    + ++
Sbjct: 290 TAPANRIEDAFRVVTDQNEAKKIFETAKKQTCVGVSFYKDTKNVLPLFVNEAGLTGVGLA 349

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               K+D                   +T +     E+L  ++   +    L I  ++K  
Sbjct: 350 F--GKEDIYVF---------------TTEQGMEISELLEQVETLSKEVDVLAIA-DVKNA 391

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
              +     S+    D ++ +Y+L+  ++ ++ A IA+++L     +           ++
Sbjct: 392 MQYIPNVNQSV--CFDTIVAAYLLNPLKNDYESADIAREYLDILIDD-----------NQ 438

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I ++Q    +   +    +   +LR +L   ++  +++ ++ P++  +  ME  G+++  
Sbjct: 439 IDEAQ---KSCYEAYTAYESSKILRDRLKETEMEQLFDEIEMPLVFTLYDMEQNGVKVAA 495

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L     ++ + ++ LE++IY+L+GE FN++SPKQLG ILF KL  P G KTKTG   +
Sbjct: 496 EALHIYGEQLGQKIVDLEKDIYELTGETFNINSPKQLGVILFEKLGLPHGKKTKTGY--S 553

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T+ D+      + P++  ILE+RQL+K+KSTYAD L  +I K   R+H  ++   T TGR
Sbjct: 554 TSADILDKLAPEYPVVSKILEYRQLTKLKSTYADGLAGYI-KDDGRIHGKFNQTITATGR 612

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++S EPNLQNIP++ +LG+ IR+ FI       + ADYSQIELRILAH +    L   ++
Sbjct: 613 ISSTEPNLQNIPVRMELGRLIRKVFIPEDGYVFVDADYSQIELRILAHCSGDEQLINAYK 672

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
            + DIHR+ A+++F    E+V+   RR+AK +NF I+YGIS F L+  L I + EAA YI
Sbjct: 673 EARDIHRITASQVFHTPFEEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITKKEAAQYI 732

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF  +P I  +++      ++NGYV T+FGRR    E++S     R+  ER A+NAPI
Sbjct: 733 ESYFETYPSIKGFLDDAVEHAKENGYVTTVFGRRRPVPELSSSNFMQRSFGERVAMNAPI 792

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AM  V++ L+++ + +K++LQ+HDEL+ E  EEE+    +I+ H M  A 
Sbjct: 793 QGTAADIMKIAMNGVNRRLKENNMRSKLVLQVHDELLIEAYEEELEDVKEILSHEMVNAA 852

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
                L VPL+V++    NW E 
Sbjct: 853 ----KLHVPLEVDMHTGKNWYEA 871


>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
 gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
          Length = 919

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/973 (29%), Positives = 479/973 (49%), Gaps = 68/973 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            +FL+DGS+FIYR F+A   + R  DG P N++     +L ++L+  R      +FA + 
Sbjct: 13  PVFLMDGSAFIYRGFFANRNMQR-SDGFPTNSLVVVSRVLLRILREERPR----YFAFVQ 67

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR+EI+P YKANR   PE L+ QL  ++   +A G+     QG EADD IA+  
Sbjct: 68  DGKGPNFRHEIFPLYKANRDATPEDLVRQLDPIQRMVRALGLRLEVSQGCEADDCIASLA 127

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQ 183
                E   V I+S DKDL Q + P   ++D   +E+  +       + G+ P +   +Q
Sbjct: 128 ARFAGE-HPVIIVSGDKDLKQCLGPNVYMWDPASKEEKLVSEADFTAESGVTPGQWPDVQ 186

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPG+PGIG KTA  +     +LE+I  +   +   K +  + E+ E   + 
Sbjct: 187 ALIGDTSDNIPGVPGIGPKTARQIFSICPSLEDIRDHFV-LLPPKLQAKLQEHLENMFIW 245

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+L  L  +    + L+ L +   +        +  E   L   +A      AA  +   
Sbjct: 246 RQLTTLSREACPGVTLDDLRVRPLDAATCALLTEEFELFALRRELAALDRLQAAEADLPE 305

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             ++     G   E           ++ +SL       +   T Q   L+ + + S   +
Sbjct: 306 EFLD----AGSIREDARPAAGKKAAAEQASLPLAQPARSGRATSQMSLLDAMPQESAPAL 361

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           ++               V  L   G A   +I    D   +  +A+     +  D  S  
Sbjct: 362 DD---------------VSALPDCGDARVALIWAHGD-REAPYLAV-----EGADGGSLG 400

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
                  ++      +  +  +T +    LK    +                L       
Sbjct: 401 EWQWTGPVAELARWLAPARTLVTAD----LKGLLTSAP----------CWQFLAGR---A 443

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
               D+ + +Y+L+   + +    ++ +W +  R E+                   E A 
Sbjct: 444 ADCIDLGVAAYLLNPEENDYGWPRLSARWGAVLRHEL---------------ESRGETAS 488

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             + + L +  L   ++  + LL ++ RL+ P++ V++ ME +G+ ID    +    ++ 
Sbjct: 489 GPARLGLAMAQLFEQRMEKDGLLELFRRLEMPLLPVLAGMEQSGVAIDAAAFRAFLDDVQ 548

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             L  L  ++Y+L+G +FN+ S +QLGD+LF  L  P+  KTK GQ  T+ Q LE++  G
Sbjct: 549 GQLDQLTAHVYELAGTQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKL-AG 607

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P++ +IL++R+L K++STY D LP  ++ +  R+HT ++  +T TGRL+S  PNLQNI
Sbjct: 608 QHPVVDSILQYRKLEKMRSTYLDPLPRLVDPQG-RIHTTFNQKATATGRLSSSNPNLQNI 666

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P++  LG+++R  FI+ P + L+SADYSQ+ELR+LAH+++   L + F N  DIH   AA
Sbjct: 667 PVRGPLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIHARTAA 726

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            ++ +  ++VSP  RR+AKTINF +IYG+   +LA +L+I  ++A D+I RYF R  G+ 
Sbjct: 727 LVYDLPPDQVSPDQRRNAKTINFGLIYGMGAQKLAQELKISTTQAKDFIARYFERLQGLK 786

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           E+ E  +   R++G+V T+ GRR    +INS       +  R AIN  IQGSAADI + A
Sbjct: 787 EFYEGVEASARKHGFVTTLGGRRRLLPDINSASGQAAALARRQAINTVIQGSAADIIKLA 846

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M++V +     +L  ++LLQ+HDEL+ EVP +    A  ++   M+  C     L VPL 
Sbjct: 847 MLAVARDERLRELDARLLLQVHDELLLEVPADAAEEAGALVARLMQDVCPAGKELSVPLL 906

Query: 964 VNIKVSNNWQEEN 976
           V+    ++W   +
Sbjct: 907 VDWGTGHDWGAAH 919


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/692 (42%), Positives = 440/692 (63%), Gaps = 7/692 (1%)

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +A   D DA+++EP  ++ +   +     + ++        SQ  S +   ++ +   TP
Sbjct: 1   MAEATDTDASSVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTP 58

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           + L   R  +     I+  +Y  I +   ++QW+ +    G  +F   T ++D   ++ +
Sbjct: 59  KALAEGRAAQAIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELV 118

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
             +++    K   ++                           L+ LK+  E+   LKI  
Sbjct: 119 GFSLALAPGK--AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQ 176

Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSR 524
           N+KYD LV+ R+GI+   F+D ML+SYVLD+G  SH +  ++++WL +T    K++  S 
Sbjct: 177 NMKYDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSG 236

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           KS++  D +   +   +A E+++V L+LW +L+P+L  E L+ VYERL++P++DV+++ME
Sbjct: 237 KSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARME 296

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI +D+ +L ++S ++++   + E+ IY L+GEKF + SPKQLGDILF K+  P  +K
Sbjct: 297 ERGIAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASK 356

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTGQW T+AQ LE +    +P+ + I++WRQL+K+KSTY D+LP  IN +T+RVHT Y+
Sbjct: 357 TKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYA 416

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
           +AST TGRL+S +PNLQNIP++T  G+KIR AFI+ P  KLISADYSQIELR+LAH+A I
Sbjct: 417 MASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADI 476

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L Q F + +DIH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL IP
Sbjct: 477 AQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIP 536

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I +    +R  NE
Sbjct: 537 REEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNE 596

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAAINAPIQG+AADI RRAMI +  +L    LA +MLLQ+HDEL+FEVPE E+     ++
Sbjct: 597 RAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVV 656

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              ME A +P ++L VPL+V+ + ++NW E +
Sbjct: 657 RRVMENAAMPAVSLAVPLRVDARAAHNWDEAH 688


>gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 889

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/987 (32%), Positives = 482/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+        S
Sbjct: 14  DKKKLLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PS 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 70  HVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELPQYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AEK+ F VTI+S DKDL+QL    T +  + K     E     ++++K G+ 
Sbjct: 130 IIGTLGRLAEKDSFDVTIVSGDKDLIQLTDERTVVEISKKGVAEFEAFTPAYLMEKMGLT 189

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  IG KT   LL E+G+L                E I E
Sbjct: 190 PAQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSL----------------EGIYE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T +  
Sbjct: 234 NIDGMKASK------------------MKENLINDKEQAFL---------SKTLATIETQ 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + ++     G  +E        +   Q      Q   ++S   P+ L    +
Sbjct: 267 A----PIEIGLDDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSTDAPESLDFTIV 318

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +SQ  ++ +S                        F       +      +  A S  D
Sbjct: 319 DHVSQDMLSAES-----------------------IFHFELFGENYHTDDLVGFAWSCGD 355

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L +E    LK F E        ++ K  K++
Sbjct: 356 K--------------------LYATDKLDLLQE--PILKNFLE--KTPLKVYDFKKAKVL 391

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R  ++++    D  L  Y+L S   +++I++IA  +      +      K  K +IP 
Sbjct: 392 LNRLDLNLQAPAFDSRLAKYLL-STVENNEISTIASLYGQTYMVDDETFYGKGVKKAIP- 449

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI++
Sbjct: 450 ---EREKFLEHLARKVAVLVETEPVLIEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 506

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+ E+FN++SPKQLG +LF KL  P     KT   
Sbjct: 507 KKETLLEMQAENEVVIEQLTQEIYELADEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY  SL + I    + +HT Y    T T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVSLQDWILDDGK-IHTRYVQDLTQT 625

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 626 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 685

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I R +A
Sbjct: 686 AFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGISRKKA 745

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+E+     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 746 KAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 805

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L +    TKMLLQ+HDE+V EVP+ E+     ++  +M
Sbjct: 806 NSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTM 865

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 866 EEA----IQLSVPLIADENEGATWYEA 888


>gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
 gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
          Length = 881

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/989 (31%), Positives = 489/989 (49%), Gaps = 123/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAF+A           DGL  NAI  F NML  +L++ + ++ 
Sbjct: 1   MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDA- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 60  ---ALVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+  TI++ D+DL QL +  T +  TVK     E    EHV +K G
Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL++YG++EN                +
Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIEN----------------L 220

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               +  + S+               E+LI    +  +             +++   T D
Sbjct: 221 YANIDAMKTSKM-------------KENLIN---DKDKAY-----------LSKQLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    PV +D+                D        + L D  +K++     +K+  +
Sbjct: 254 RDA----PVTIDLA---------------DVKYSGPDLAKLRDFYTKMDMNSLLKKIGGD 294

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             +       +      I+            +T    +F+I     +   +  +   I T
Sbjct: 295 VAKPTQPVHFSVLDDQSILTLT---------KTTEPLTFEIEMLADNYHIADQVGFFIGT 345

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            ++          +  D+S+ T  +                K+  + +      + K + 
Sbjct: 346 KEE--------TYVSTDVSLLTIPEVA--------------KWLGDSNRDLTVFDGKRNI 383

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           +  HR G+ +     D++L SY+++   +S+D+  IA+      L        K  K  +
Sbjct: 384 VAAHRLGLHLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQV 443

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P DK+   Q        S  +  L   L   L  ++   ++  ++ P+  V+++MEI GI
Sbjct: 444 PEDKLLFEQF----ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   LK +  E S+++  LEE IY  +G KFNL+SPKQLG++LF KL  P   KTKTG
Sbjct: 500 TLNAQTLKNMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+       +PI+++IL++R  +K+ STY   L         ++HT Y    T
Sbjct: 560 Y--STSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPD-HKIHTRYLQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PN+QNIP + + G+ IR+AF+   P  ++ S+DYSQIELR+L+HI+    +
Sbjct: 617 QTGRLSSVDPNMQNIPARDE-GKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENM 675

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            Q F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + LA  + I R 
Sbjct: 676 QQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGISRK 735

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF ++P +H+Y+E      R++GYVET+F RR +  +I+S   ++R   ER 
Sbjct: 736 KAKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERT 795

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE P  E+    Q++  
Sbjct: 796 AMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPK 855

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    ++L VPLKV       W + 
Sbjct: 856 IMDSA----VSLVVPLKVESHYGPTWFDA 880


>gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 912

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/982 (29%), Positives = 461/982 (46%), Gaps = 93/982 (9%)

Query: 15  FIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFR 73
             +RAFYA P+ +     G   NA+ GF +M   LL N +     +H AV FD P  TFR
Sbjct: 1   MAFRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLDNEQ----PTHMAVAFDLPGGTFR 56

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
            E Y +YK  R + P+  L Q+ L++   +A G+  +   G+EADDI+AT    A+ EG 
Sbjct: 57  TEEYAEYKGTRDETPQPFLGQVELIQEVLEAMGVKTLTAPGYEADDILATLAVSAQAEGM 116

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
            V I S D+D  Q V+    +   VK      ++    V +++G+ PE+   L AL G++
Sbjct: 117 EVLICSGDRDSFQTVTEQCTVLYPVKGVSTLRRMTPHEVEERYGVTPERYPHLAALVGET 176

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DN+PG+PG+G KTAA  L  Y  L+ ++ +A +IK  K  +++ ++ +    +R+L  L
Sbjct: 177 SDNLPGVPGVGPKTAAKWLNLYDGLDGVIAHADQIKG-KAGQSLRDHLDDVVRNRRLNRL 235

Query: 250 RTDVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
            TD+ + + P   L L   +   L    + LEF  L  R                     
Sbjct: 236 LTDLDLGVVPRTDLRLPGADRAGLARVFETLEFRTLHQR--------------------- 274

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
                            ++   F+  SD       E       L  L+ +S         
Sbjct: 275 ----------------ALRILSFTDTSDHAEPGEGEGPGALSALSDLEIVSLGHD----- 313

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
              +    +  W++     G A+        D   S+P+ + +           + +   
Sbjct: 314 ---LAAGHLAHWLEA----GPAA--------DGDRSRPLGVDV----VGVLRPVEGDAAL 354

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FE 487
           + LS  +   +     +  E  + L +F  +    K+  + K     L   G+++ G   
Sbjct: 355 VSLSDGSRAVAIDLTEILPEDEAVLARFLSDTDRPKLVADAKGSWHALSARGLTLDGVIA 414

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL--------KSRKSSIPIDK---ISDS 536
           D  L  Y+    + S+D+ ++ Q+WL      +            +S    D     SD+
Sbjct: 415 DPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVDESGAQANDGPGESQSAFDLEALTSDA 474

Query: 537 QVQEH--AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
               H  +   + V+L L ++L  ++     + ++  L+ P+   ++ ME  GI +D  +
Sbjct: 475 VPATHMASARRAAVLLPLQVVLDEQMAARDAVGLFTDLEMPVAATLTVMEDAGIAVDDAV 534

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L     E+   +    E  Y  +G + NLSSPKQL  +LF +LK P   KTKTG      
Sbjct: 535 LAARETELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTDAD 594

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                     +P ++++LE R   K++ T  + L   I     R+HT +      TGRL+
Sbjct: 595 ALAGLYAKTSHPFLEHLLEHRDAIKLRQT-VEGLRKAIQADG-RIHTTFQQTIAATGRLS 652

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIP + + G +IR AF        L++ADYSQIE+RI+AH++    L + F +
Sbjct: 653 STDPNLQNIPARHEEGMRIREAFTVGEGYDCLMTADYSQIEMRIMAHLSGDQALIEAFRS 712

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+HR VAA + G+ +  V+ Q R H K +++ + YG+S F LA QL I  +EAAD   
Sbjct: 713 GEDLHRYVAALVHGIEVGDVTAQQRSHVKAMSYGLAYGLSTFGLARQLGIDNAEAADLRN 772

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF  +H+Y+E      R++GY ET+FGRR +  ++ S     R + ERAA+NAPIQ
Sbjct: 773 AYFARFGKVHDYLESVVEQARRDGYTETMFGRRRYLPDLTSDNRQRREMAERAALNAPIQ 832

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI V  +L +  L++++LLQIHDEL+ EV   E      ++   M  A  
Sbjct: 833 GSAADIVKKAMIDVDGALTEQGLSSRILLQIHDELLIEVAPGEAAAVESLLKEQMGGAA- 891

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
               L VPL V +     W+E 
Sbjct: 892 ---ELSVPLDVAVGRGQTWREA 910


>gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
 gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/990 (30%), Positives = 489/990 (49%), Gaps = 113/990 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  +RAFYA    L R   H GL  NA+  F N L +++   + +  
Sbjct: 1   MTKK--LLLIDGNSLAFRAFYAMYNQLDRMISHKGLHTNALVAFNNFLDQIVDPMQPDL- 57

Query: 58  ASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                V +D      TFR E++P+YK  R K P     Q P +R      G+   E  G 
Sbjct: 58  ---AVVAWDAASGKETFRGELFPEYKDGRSKAPSEFKEQFPYLREMVALHGLRNYEQPGL 114

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADDII TY+ + E+ G+ V I++ D+DL QL +    +  T K     E+   +++++K
Sbjct: 115 EADDIIGTYSRLGEQAGYTVIIVTGDQDLTQLATDNITVNVTKKGVTEIERYTPDYIMEK 174

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           + + P +++  +ALTGD+ DN PG+  +G KTA  LL EY +++                
Sbjct: 175 FNLKPLQIIEKKALTGDTSDNYPGVTKVGEKTALKLLAEYHDID---------------- 218

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N+  + +  + S+          +   L +         +L + L               
Sbjct: 219 NLYAHVDDMKQSK----------LKDNLINDRQSAFCARKLATILTD------------- 255

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                     + L +   E +GI  +  +     +          Q +KI + Q   ++ 
Sbjct: 256 --------AHLALPLEEIEYRGIDYDNLVTFYENLD------FKKQLAKIKALQKSGQIS 301

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             +        +                           +F I     +      +   I
Sbjct: 302 GSQTTVEKSINVIKL---------QDDNLQAVAMLGTKIAFHIEMIGQNYHIDDMVGFVI 352

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
            +       S  V  +                         LK   EN   +K   NIK 
Sbjct: 353 GSPATGYYGSRDVTLLQRP---------------------ELKSVIENAGIIKNVFNIKA 391

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSS 527
             ++L R GI ++G   D +L+SY+LD+  + +++A++AQ++  Y   +     K  K +
Sbjct: 392 QLILLKRLGIKLKGTKFDFLLVSYLLDTTDNDNELATLAQRFDLYMTSDEDIYGKGAKFA 451

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP D   D++V  H    +++++Q+       L   +  H+Y  ++ P+  V++ ME  G
Sbjct: 452 IPED---DARVLAHLANKADILMQVEQSAFDALQEHEQTHLYTEIELPLAQVLADMEYQG 508

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I+IDQ  L+ + +++   + ++E+ IY  +GEKFN++SPKQLG +LF K+  P   +TKT
Sbjct: 509 IKIDQKRLRDIGSDLEGRIHAIEDAIYIEAGEKFNINSPKQLGVLLFEKMGLPVVKRTKT 568

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+ +IL++RQL+K+KSTY + L   ++ +  ++HT +    
Sbjct: 569 GY--STAVDVLEKLAAQAPIVDHILQYRQLAKLKSTYVEGLLTVVHDQDSKIHTRFLQTL 626

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++T+ G++IR AF+   P  +++ ADYSQIELR+LAH+     
Sbjct: 627 TQTGRLSSVDPNLQNIPMRTEEGRQIRTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKN 686

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           + + F N  DIH   A  +FG+  +  V   MRR AK +NF I+YGIS F LA  L I R
Sbjct: 687 MQRAFLNGEDIHAETARAVFGLKDDAPVDALMRRTAKAVNFGIVYGISDFGLANNLGISR 746

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I  YF  FP IH ++ K K    + G+VETI  RR +  EI S   ++R+  ER
Sbjct: 747 GEAKSFIDTYFKEFPQIHAWMAKIKEIAHEQGFVETIAKRRRYLPEIGSKNFNLRSFAER 806

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AMI V  +L++H +  +MLLQ+HDEL+FE P +EI   ++++ 
Sbjct: 807 TAMNSPIQGSAADIIKIAMIKVADALQEHHMQARMLLQVHDELIFEAPIDEIQELTELVT 866

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           + M+ A +    L VP++V     N W + 
Sbjct: 867 NVMDSAVV----LDVPMRVESHYGNTWYDA 892


>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
 gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
          Length = 880

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/979 (30%), Positives = 491/979 (50%), Gaps = 110/979 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S IYRAF+A PLL+    G+  N + GF  ML ++L+  +     +H  V 
Sbjct: 3   NKLVLIDGNSIIYRAFFALPLLNNDK-GVYTNGVYGFTTMLLRILEEEK----PTHMLVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P+++    AF I   ++  +EADDII T 
Sbjct: 58  FDAGKTTFRHSTYKEYKGGRQKTPPELSEQFPVLKELLDAFSIKYYQLDQYEADDIIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           +  A+K+ + VT+IS DKDL+QLVS    +  T K    DIE     + +          
Sbjct: 118 SKQADKKDWEVTVISGDKDLLQLVSEQVTVSVTKKG-ISDIEKYTPAYMLEK-------- 168

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
               + D I             L    G+  + +     + +K   + + +Y        
Sbjct: 169 -MEITPDQI-----------IHLKALMGDSSDNIPGVPGVGEKTATKLLKQYE------- 209

Query: 245 KLVMLRTDVPITIPLEHL--ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                         LE++   +++ +G +L   L        +++   T + ++    P+
Sbjct: 210 -------------NLENVYEHIDEISGKKLKENLSNHREDAFMSKELVTINRES----PI 252

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            + +     +G    + +      K   F SL  + S    E+T        ++  S   
Sbjct: 253 EITLENLPYQGFQTSSVVQ---IFKDLGFQSLLSRVS----EETEDDAEQPNIEMESIEF 305

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
              ++ TK + T +   +++ L               +        IA+     K+  SF
Sbjct: 306 DVVENVTKDLFTDNDALYIEML-------------GENYHLIPIEGIAV---VNKERASF 349

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
               I  D++++++                 K + E+    KI  + K  K+ L R  I+
Sbjct: 350 ----IPTDIALNSN---------------IFKAWAEDPQKHKIVFDAKRTKVALLRNNIN 390

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           M+G   D +L SY+L+   ++HDI +IA +     + +  +   K  K  +P   +    
Sbjct: 391 MQGIIFDSLLASYLLNPAENNHDIPAIANRKSRSDVQFDEEVFGKGAKQKVPEADV---- 446

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           + EH +  + ++  L+  +  +L   +   + + L+ P+  +++++E  G+Q+D D LK 
Sbjct: 447 LNEHVVRKTQLLFDLYPEMEEELGNNEQYELLKELEMPLALILAEVEHYGVQVDIDKLKD 506

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  ++ + L +LE+ +Y+L+GE FNL+SPKQLG ILF KL  P   KTKTG   +TA D+
Sbjct: 507 MGEDLKERLSTLEQEVYELAGETFNLNSPKQLGPILFEKLGLPVIKKTKTGY--STAADV 564

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +    ++ II  +L +RQL K++STY + L   + K T R+HT Y+ A T TGRL+S+E
Sbjct: 565 LEQLENEHDIIPKLLMYRQLGKLQSTYIEGLLKVVRKDTSRIHTRYNQALTQTGRLSSIE 624

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+ + G+KIR+AF+       + +ADYSQIELR+LAHIA    L + F+   D
Sbjct: 625 PNLQNIPIRLEEGRKIRQAFVPSKDNWIMFAADYSQIELRVLAHIAGDEKLIKAFKEDTD 684

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A ++F V  ++V+  MRR AK +NF I+YGIS + L+  L I R EA  +I+RYF
Sbjct: 685 IHTQTAMDVFHVESDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKKFIERYF 744

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
           + +PG+  Y+++     +  G+V TI  RR +  +I S   ++R+  ER A+N PIQGSA
Sbjct: 745 NSYPGVKTYMDEIVQEAKHKGFVSTIMKRRRYLPDITSRNFNMRSFAERTAMNTPIQGSA 804

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI ++AMI +   L++  L   +LLQ+HDEL+ E PE EI    +I+   ME      +
Sbjct: 805 ADIIKKAMIDLDHRLKEENLQANVLLQVHDELILEAPENEIDKLKEIVPDVMEN----TV 860

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L VPLKV+     +W + 
Sbjct: 861 ELDVPLKVDYSFGKSWFDA 879


>gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988]
 gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561]
 gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161]
 gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818]
 gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818]
          Length = 875

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/977 (31%), Positives = 475/977 (48%), Gaps = 110/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  AE +G  V II+ D+DL QL S  T +Y T K                   +  ++ 
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKG------------------IADMET 158

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T +++     +          L+   G+  + +     + +K   + + E+  T     
Sbjct: 159 NTPETLKEKYNLTPEQIIDMKGLM---GDSSDNIPGIPGVGEKTALKLLHEFGGTV---- 211

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                                      ++   + +   KL  +V    +    + E   +
Sbjct: 212 -------------------------ESVLEHAEEISGKKLKEKVLENKELAILSKELATI 246

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           ++++     I    E  +    +T +   L  + +     +  +    E  ++L +    
Sbjct: 247 NVDSP----IECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEESKELKELSF- 301

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                +IV     Q +       G  +  +  +  +   +  I                 
Sbjct: 302 -----EIVTELKEQHF------GGKTALYVELENDNYHTANFIG---------------- 334

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L+VH+SQ +      T E     +K+ E++   K+ ++ K   + ++R G+++ 
Sbjct: 335 ------LTVHSSQGTYFFTKETAESSEAFRKWVESDQ-TKVVYDAKKTIVAMNRIGLAIS 387

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQ 539
           G   DIML SY+L+   S  D  S+A +      +       K  K S P + I    V 
Sbjct: 388 GITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAVYGKGAKRSTPEESI----VA 443

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  I  L   L   L   + L + E L+ P+  V+++ME+ G+ +D D L+ + 
Sbjct: 444 AHLARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTDRLEDMK 503

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+   L +LE +I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG   +TA D+ +
Sbjct: 504 VELGGRLKTLEASIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTGY--STAADVLE 561

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PN
Sbjct: 562 SLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPN 621

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH
Sbjct: 622 LQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIH 681

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  
Sbjct: 682 TKTAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVS 741

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAAD
Sbjct: 742 YPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAAD 801

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L
Sbjct: 802 IIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VEL 857

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+    + W + 
Sbjct: 858 SVPLKVDSAFGDTWYDA 874


>gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
 gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
          Length = 879

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/981 (31%), Positives = 488/981 (49%), Gaps = 114/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG+S  YRAFYA P L  K  GL  N++ GF  ML ++L++++ +    +  V 
Sbjct: 2   DKIILLDGNSLSYRAFYAMPALKNKK-GLYTNSVYGFTLMLERILEDTKPK----YALVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y  YK  R K P  L+ Q   VR   +++GI   E   +EADDII +Y
Sbjct: 57  FDKGKETFRHKSYEAYKGTRDKTPTELVEQFGYVRELIESYGIKYEEHLDYEADDIIGSY 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             IAEK G  V I+S DKDL QL S    +Y T +     +    E + +K+G+ P++++
Sbjct: 117 AKIAEKAGLEVIIVSGDKDLTQLASDNITVYYTKRGVTEIDYYTPEFINEKYGLTPQQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPGIPG+G KTA  LL EY N+EN+L N   I  KK +E + E  E A
Sbjct: 177 DMKGLMGDKSDNIPGIPGVGEKTAIKLLTEYENVENVLENIDNISGKKLKERLTEGKEDA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS+                          +L +    +     I  +    D +     
Sbjct: 237 ILSK--------------------------KLATIFTDVPVDNKIEDLTFKEDREKKK-- 268

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                     +  +F S   + S+ NS     +   +  +    
Sbjct: 269 -----------------------ELFEKLEFVSFLRKLSQENSAADESETETKEEKIKKD 305

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I        +N K     ++               T D  +S  + +++         
Sbjct: 306 IEIQIADKDTKLNFKKSSLHIECY-------------TEDYQNSDVLGVSVYVG------ 346

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                    D +   S+++   N    E L             K  ++IK    +  +  
Sbjct: 347 ---------DTAYIFSEENFFDNKYAIEYLQ--------SQEEKTVYDIKKIIYIAKKNN 389

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKISD 535
             + G   DI + +Y++D    S +I  I   +L        +   K  K S+P  ++  
Sbjct: 390 KKINGDVFDIKIANYLIDVTSKS-EIDKIVFNYLGEIISSNEEIYGKGAKRSLPTQEV-- 446

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             +  +  + +  IL++  L+   L  E +L +Y+ ++  +  V++ ME  GI + +  L
Sbjct: 447 --LNSYIAKIAASILEVKPLMIKSLEEENMLDLYKNIEIKVARVLANMEFEGIHVSKKAL 504

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++S E  + +  LE +IY L+G +FN++SPKQLG +LF  L  P   KTKTG   +TA 
Sbjct: 505 DEMSHEFDERIKVLEGSIYTLAGSEFNIASPKQLGVVLFEDLGLPVVKKTKTGY--STAV 562

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           ++ +     + II  I+E+R L+K+ STYA  L   I +  + +HT Y    T TGRL+S
Sbjct: 563 EVLEQLQYKHDIIPLIMEYRTLTKLNSTYAKGLVKDITREGK-IHTRYEQTLTQTGRLSS 621

Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           + PNLQNIP + + G+KIR+AFI +   + ++S DYSQIELR+LAHIA+   +   F++ 
Sbjct: 622 VNPNLQNIPTRIEEGKKIRKAFIPASNDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHD 681

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A+++ GV +++V+P MRR AK +NF I+YGIS F L+  L I R  A ++I++
Sbjct: 682 VDIHTKTASDVNGVPLDEVTPTMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIEK 741

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   F G+ +Y+     F +++GYVET++ RR    EIN+    I N+N R A+N PIQG
Sbjct: 742 YLETFKGVDKYMTDIVKFAKEHGYVETLYNRRRSLPEINAKNKIIANLNARIAMNTPIQG 801

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMIS +  +E+ K+  K+LLQ+HDEL+F+V ++ +   +  +V  ME+A   
Sbjct: 802 TAADIIKIAMISAYNYIEESKVDAKLLLQVHDELIFDVSKDILEEFTDKMVAIMEEAA-- 859

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
             NL V LK       +W E 
Sbjct: 860 --NLDVKLKAEASSGPSWYEA 878


>gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
 gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
          Length = 903

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/982 (28%), Positives = 449/982 (45%), Gaps = 92/982 (9%)

Query: 1   MQKENH-LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M    H L L+DG S  +RAFYA P  + +   G   NA+ GF +ML  LL++       
Sbjct: 1   MTSAKHKLLLLDGHSLAFRAFYALPEENFQTAAGQTTNAVYGFVSMLINLLRDE----DP 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV FD    TFR ++YP+YKANR K PE    Q+ L++    A GI     +G+EAD
Sbjct: 57  THLAVAFDVSRKTFRAKMYPEYKANRSKSPESFPAQVELIKEVLGALGIVVEAHEGYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGI 174
           D+IATY   A+++G+ V I++ D+D +QLV+P   +    +      +   E V +K+G+
Sbjct: 117 DVIATYATKAQEQGYQVLIMTGDRDALQLVTPDVTVLYPNRGVSDLVRYTPEQVQEKYGL 176

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +     AL GD  DN+P IPG+G KTAA  ++ Y +L+ +L  A  +   K  + + 
Sbjct: 177 TPAQYPDFAALRGDPSDNLPKIPGVGEKTAASWVRAYNSLDELLERADEVPG-KTGQALR 235

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                                    EHL     N  +L   ++ +     +  +      
Sbjct: 236 -------------------------EHLDQVRQNR-QLTELVRDMPLGHSLAELERRQWD 269

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                                              +F  L D+     S   P+      
Sbjct: 270 RD------------------------QVHALFDQLEFRVLRDRLFATLSAVEPEAEEGFD 305

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           +              +++    +  W+ +    G            A H   +       
Sbjct: 306 IAG------------ELLAPGQVGAWLDEHARTGERCGV-------AVHGDAVPSGGGGT 346

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             KD     +  +        S  +     LT    + L  +  +    K  H  K+   
Sbjct: 347 PLKDGGRAWLIAVASP---DGSGAAIKTEALTAHDTAALGAWLADPAAPKAFHEAKWAAH 403

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR-KEILKSRKSSIPIDK 532
            L   G S+ G   DI L +Y+   G+ S  +  +A ++L      +    ++ S+   +
Sbjct: 404 ALRGQGFSIAGVTTDIGLAAYIARPGQRSFQLPDLAVRYLRRQLGPDDSGQKQLSLLDAE 463

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             D+     A+  +  I +L   L   L       +   ++ P+  V+  ME  GI +DQ
Sbjct: 464 QDDNAEANGAVSEAAAIRELGEALDDVLAKAGSADLLHTMELPLTFVLGAMEEAGIAVDQ 523

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D L  + A+ S  +    E+ Y + G++ NL SPKQL  +LF +L  P   KTKTG    
Sbjct: 524 DALAGLHADFSARVQQAAESAYAVIGKEINLGSPKQLQVVLFDELGMPKTKKTKTGHTTD 583

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                      ++P + ++LE R  +++ +T A  L   +     R+HT +      TGR
Sbjct: 584 ADALQWLFERTEHPFLSHLLEHRDATRLMTT-AQGLIKAVGPDG-RIHTTFRQDVAATGR 641

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVF 771
           L+S +PNLQNIP++T+  ++IR  F+     + L++ADYSQIE+RI+AH++    L + F
Sbjct: 642 LSSTDPNLQNIPVRTEEARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDEGLIEAF 701

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               D+H  VA+  FGV I++V  ++RR  K +++ + YG+S F LA QL +   EA   
Sbjct: 702 RTGEDLHNFVASRAFGVPIDQVGAELRRRVKAMSYGLAYGLSAFGLAQQLGVSGEEAKAQ 761

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           ++ YF RF G+ +Y+ +     R+ GY ET+FGRR +  ++ S     R + ERAA+NAP
Sbjct: 762 MEAYFARFGGVRDYLREVVEEARRKGYTETLFGRRRYLPDLTSDNQQQRAVAERAALNAP 821

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI V ++L    + ++MLLQ+HDELV EV E E    + ++   M  A
Sbjct: 822 IQGSAADIIKVAMIHVAEALAARNMRSRMLLQVHDELVLEVAEGEQDELAALVAEQMGSA 881

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
               I L VP+ V++    NW 
Sbjct: 882 ----IELSVPMDVSVGFGPNWD 899


>gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 909

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/978 (27%), Positives = 444/978 (45%), Gaps = 98/978 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G   NAI GF +ML   L++       +HF
Sbjct: 19  NRPRLLLMDGHSLAYRAFFALPAENFTTASGQTTNAIYGFASMLANTLRDE----APTHF 74

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R+  +P+YKANR K P+    Q+ L+             I GFEADD+I
Sbjct: 75  AVAFDVSRKTWRSADFPEYKANRSKTPDEFKGQVELIGELLDTMNAERFAIDGFEADDVI 134

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE  GF V I++ D+D  QLVS  T +    K      +     V +K+G+ P+
Sbjct: 135 ATLATQAEAAGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPAKVEEKYGLTPQ 194

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPG+G KTA   + ++G+   ++ +A  +K K          
Sbjct: 195 QYPDFAALRGDPSDNLPGIPGVGEKTATKWINQFGSFAALVEHADEVKGKV--------- 245

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                                          G  L   L+A++  + +  +    +   A
Sbjct: 246 -------------------------------GQALRDHLEAVKLNRHLTELVRDVELPKA 274

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +      + T  KG     EI   +  +      L+     +  E    +  +E    
Sbjct: 275 VTDLERAPYDRTALKGFLEVLEIRNPSLRE----RLLAVDPGAVEEEPPAPEAGVELDG- 329

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        ++   ++  W+++  T            +    +  + +  S  +  
Sbjct: 330 ------------TVLGAGELAYWLEQHGTQPL--------GVATVSAWALGVG-SVSEVA 368

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              +      F                L +        +  +    K+ HN K    V  
Sbjct: 369 LAAADGKAAWF------------DTTQLDESDERAFAAWISDPSRPKVMHNAKDALRVFP 416

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            +G  + G   D  L +Y++  GR S  + +++ ++L           + +   D+ +++
Sbjct: 417 EHGWEIAGVTMDTALAAYLVKPGRRSFALDALSIEYLHRELAPAAADGQLAFGTDEQAEA 476

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
                 +  +  +L L   L  KL     + +   ++ P   ++++ME  GI  D+  L+
Sbjct: 477 DA---LMSQARAVLDLGEALGGKLEEVGAVELLHDVELPTSLLLARMERHGIAADRAHLE 533

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +  + +  +    +  +   G +FNL SPKQL ++ F +L  P   KTKTG        
Sbjct: 534 AMEQQFAGAVQQAVKEAHAAVGHEFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADAL 593

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  ++ +   +L  R+ ++++ST  + L   I     R+HT +S     TGRL+S 
Sbjct: 594 AWLAAQTEHELPVIMLRHREQARLRST-VEGLIKTIAADG-RIHTTFSQTVAATGRLSST 651

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQN+P++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  
Sbjct: 652 DPNLQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDLGLIEAFTSGE 711

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+++F V    V  +MRR  K +++ + YG+S F L+ QL I  +EA   +  Y
Sbjct: 712 DLHTTVASQVFSVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEPAEARVLMDTY 771

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+ +  +  R  GY  T+ GRR +  ++NS     R   ER A+NAPIQG+
Sbjct: 772 FERFGGVRDYLRRVVDEARATGYTATMLGRRRYLPDLNSDNRQRRESAERMALNAPIQGT 831

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM++V ++L D KL++++LLQ+HDE+V EV   E      ++ H M  A    
Sbjct: 832 AADIVKVAMLNVDRALTDAKLSSRLLLQVHDEIVLEVAPGEREQVETLVRHEMSSA---- 887

Query: 956 INLRVPLKVNIKVSNNWQ 973
           ++LR PL V++    +W+
Sbjct: 888 VSLRAPLDVSVGAGPDWE 905


>gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
 gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
          Length = 1045

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/1087 (28%), Positives = 498/1087 (45%), Gaps = 157/1087 (14%)

Query: 1    MQKENHLFL-VDGSSFIYRAFYATPLLSR----KHDGLPVNAIAGFCNMLWKLLQNSRKE 55
            M   + + L VDG S  +R++YA             G+P +   GF   L +++   + E
Sbjct: 1    MVNHSPIALFVDGHSLAFRSYYAFAKSRNGGLKTSTGIPTSICFGFLKSLLEVINTQKPE 60

Query: 56   SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                + A+ FD    TFR+E   +YKA+RP+ PE L+  L  ++   +AF +  I   G+
Sbjct: 61   ----YLAIAFDLGKPTFRHEADKNYKADRPEPPEDLIIDLGNLQDLLKAFNLTVITAPGY 116

Query: 116  EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP----TTCLYDTVKE---EKIDIEHV 168
            EADDI+ T    A   GF V I+S D+DL QL+      +       K    ++   E V
Sbjct: 117  EADDILGTLAKKASATGFKVKILSGDQDLFQLIDAEKGISVLHLPGGKGSIPQEFFPEEV 176

Query: 169  IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
             +K GI P ++V  +AL GD  DNIPG+ GIG KTA  LL EYG L  I  +  +IK   
Sbjct: 177  KEKLGILPTQVVDYKALCGDKSDNIPGVRGIGQKTAVKLLNEYGCLSEIYASLEQIKGA- 235

Query: 229  RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             ++ ++     A  S+ +  +  +VP+ I +E    +      +   L+ LE    IN++
Sbjct: 236  NKKKLVLGKTEAEHSQFMAKIEVNVPLNIDIEDCKFKKIYPSEIEPILQKLELQHFINKI 295

Query: 289  ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIK-TSQFSSLSDQTSKINSEQTP 347
                    + +E     + +  ++    + EI ++T ++  S     S + +K+  +QT 
Sbjct: 296  PHLEQQFNSLVE-----VKSGLDESGIQQQEISQNTLVEIGSDDWFFSAEDTKVAKQQTS 350

Query: 348  QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASFKIITDTMDAFH 403
             K  ++                 +   + + + V  L+   +     ++   T +++   
Sbjct: 351  TKSKIKP--------------QIVDTIEKLNKLVNILKEQKNPHIPVAWDTETTSLEPRD 396

Query: 404  SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
            ++ + I        +D +      +I     T      KN     +L  LK   E+  + 
Sbjct: 397  AELVGIGCCWGKNMEDVA------YIPTGHKT-----DKNLDKVTVLESLKPVLESSEYP 445

Query: 464  KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKE 519
            K+  N K+D+LV    GI + G F D ML SYVL+   + H +  I  ++L       + 
Sbjct: 446  KVFQNSKFDRLVFRCQGIKLTGVFFDTMLASYVLNP-EAKHSLEEIYIRYLRNVGINLQS 504

Query: 520  ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI--------VEKLLHVYER 571
                   +  I  +   +V ++      V  QL   LR +L          + L  +   
Sbjct: 505  YQDVVSKNQTIADLDILKVADYCGTQVWVTFQLVEKLRTELEKADKNKSTEKSLYRLLVD 564

Query: 572  LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE-----------------NIY 614
            +++P+  V+++ME  GI+ID + LK+ S ++ ++L  +E+                  I+
Sbjct: 565  VEQPLEPVLAEMEFQGIRIDIEYLKKFSVQLKEDLEEIEKRAFKTVDSQVLQKYLQTEIH 624

Query: 615  DLSGEKF-------------------------------NLSS---------------PKQ 628
            ++    F                               N+ S               P Q
Sbjct: 625  EIDFNSFSNQQELKKAISSPILKAYITKLLKEHRQNLENIESQINQVETRDLLNLNSPSQ 684

Query: 629  LGDILFTKLKFPSGAKTKTGQWKTTAQD---LEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            L ++LF  L        +     +T        Q     +PII  IL  R L K+ STY 
Sbjct: 685  LSELLFRILNQNHKKSRRIKTGYSTDVVALEKLQTEPEHHPIIDEILNHRTLYKLFSTYV 744

Query: 686  DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
            +++P  +   TQRVHT ++   T TGRL+S EPNLQNIPI T   ++IR+AF+      L
Sbjct: 745  EAIPRLVRSDTQRVHTNFNQTQTDTGRLSSSEPNLQNIPIGTKFSRQIRQAFLPKKDWLL 804

Query: 746  ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            ++ADYSQIELRILAH+++   L + ++N+ D+H + A  +F    E++S + RR  KTIN
Sbjct: 805  VAADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTAKLLF--EKEEISSEERRVGKTIN 862

Query: 806  FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
            F +IYG+   +LA  ++I   E+  ++++Y  ++  +  Y+EK K      GYVETI GR
Sbjct: 863  FGVIYGMGAQKLARSVKITVKESKQFLEKYKQQYSLVFAYLEKLKKQAIAKGYVETILGR 922

Query: 866  RIHYDEINSPKSSIR------------------NINERAAINAPIQGSAADITRRAMISV 907
            R +++  +     ++                      R+A N+PIQGS+ADI + AMI +
Sbjct: 923  RRYFELESKTIRDLKDKEPEEINLQELKFSQNDAQILRSAANSPIQGSSADIIKIAMIRL 982

Query: 908  HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            +K L      TK+LLQ+HDELVFEVP  E+    Q+I  +ME A    + L+VPL V+I 
Sbjct: 983  NKIL--TNYQTKLLLQVHDELVFEVPPSELEKMQQLIKSTMENA----VTLKVPLIVDIH 1036

Query: 968  VSNNWQE 974
               NW E
Sbjct: 1037 GGKNWME 1043


>gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
 gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
          Length = 886

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/991 (31%), Positives = 488/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 7   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 62

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 63  PTHVLVAFDAGKTTFRTELFADYKAGRAKTPDEFREQFPYIRDMLGALGIAFYELEHYEA 122

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++ K
Sbjct: 123 DDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLMDK 182

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+  IG KT   LL EYG+LE                
Sbjct: 183 MGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEG--------------- 227

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            I E+ +                                          F     +    
Sbjct: 228 -IYEHID-----------------------------------------SFKPSKMKENLL 245

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
           +D + A +   +  INT+    I +E  + +   +         D+ S+   E    +L 
Sbjct: 246 HDKEQAFLSKTLATINTSAPITIGLEDIVYQGPDL---------DRLSQFYDEMDFVQLK 296

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                +L Q P+   +Y ++ + +                F+ + D  +    + I  A 
Sbjct: 297 NALASQLPQEPVAEIAYQEVTDIRA-----DMFSDDTVFYFEALRD--NYHREELIGFAW 349

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
               Q   ++        D+S+ T+                 KK  E        ++ K 
Sbjct: 350 GNQGQIYASA--------DISLLTT--------------KLFKKVLEQP---IATYDFKR 384

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L   G+ +     D  L +Y+L S    +++A++A+ +    L        K  K 
Sbjct: 385 SKVLLSHLGLDLPAASYDARLANYLL-STVEDNEMATLARLYTTISLDTDEVVYGKGVKR 443

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P      + +  H      V+L    ++  KL   +   +Y  ++ P+ +V+++MEI 
Sbjct: 444 AVP----DKAVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLAKMEIE 499

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI ++QD L++++ +    +  L + IY+++GE FN++SPKQLG ILF K++ P     K
Sbjct: 500 GIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVFNINSPKQLGVILFEKMQLPLHLTKK 559

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     R+HT Y   
Sbjct: 560 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADG-RIHTRYLQD 618

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 619 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDE 678

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F+   DIH   A  +FG+   E V+   RR+AK +NF I+YGIS F L+  L IP
Sbjct: 679 HLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGIP 738

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E+     +  GYVET+F RR    +INS + ++R+  E
Sbjct: 739 RKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQLPDINSRQFNVRSFAE 798

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L      TKMLLQ+HDE+V EVP  E+     ++
Sbjct: 799 RTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAAVKALV 858

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL+V+     +W E 
Sbjct: 859 KETMESA----VSLAVPLRVDESAGKSWYEA 885


>gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
 gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
          Length = 879

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/981 (30%), Positives = 488/981 (49%), Gaps = 114/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG+S  YRAFYA P L  K  GL  N++ GF  ML K+L +++ +    +  V 
Sbjct: 2   DKIILIDGNSLSYRAFYAMPALKNKK-GLYTNSVYGFTLMLEKILADTKPK----YALVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y  YK  R K P  L+ Q   VR    ++GI   E   +EADDII++Y
Sbjct: 57  FDKGKQTFRHQSYEAYKGTRDKTPSELVEQFGYVRELLDSYGIKYEEHFDYEADDIISSY 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             IAEKEG  V I++ DKDL QL S    +Y T +     +    E + +K+G+ PE++V
Sbjct: 117 AKIAEKEGLEVIIVTGDKDLTQLASENITIYYTKRGVTDIDYYTPEFIAEKYGLTPEQIV 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPGI G+G KTA  LL EY  +EN+L N   I  KK +E         
Sbjct: 177 DMKGLMGDKSDNIPGIAGVGEKTAIKLLTEYKTVENVLENIDNISGKKLKE--------- 227

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               +L   R D  ++              +L +    +     +  +  + + +     
Sbjct: 228 ----RLTEGREDALLS-------------KKLATIYTEVPVDNKLEDLTYSENIE----- 265

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                +    +  +F S   + S+  S +       E +    +
Sbjct: 266 --------------------LKRELFEKLEFVSFLRKLSQETSTEDVDVANEETVTPKKE 305

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I        ++  D              +  +   T D  +S  + I +         
Sbjct: 306 INIILADKNTKIDFTDS-------------ALHVECYTEDYHNSDVVGIVVYREGD---- 348

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                      +   S++    N    E L           F+K  ++ K    +  R G
Sbjct: 349 -----------AYIFSEEQFFTNEFVVEYLQ--------SEFVKTVYDFKKILFIAKRNG 389

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKISD 535
           +++ G   D+ ++SY++D    + +I  I   +L        +   K  K ++P    S 
Sbjct: 390 VNINGEVFDVKIVSYLIDVNAKT-EIDKIVFNYLGKIIKSDEEIYGKGAKRTLP----SQ 444

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             +  +  E +  I  +  L+  KL  E +  +Y+ ++  +  V++ ME  GI + +  L
Sbjct: 445 DVINPYIAEVAESIALMKPLMEEKLAEENMTDLYKDIEIKVAKVLANMEFEGIHVSKKAL 504

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +++SAE  + + +LE +IY L+G +FN++SPKQLG +LF  L  P   KTKTG   +TA 
Sbjct: 505 EEMSAEFDERIKTLESSIYTLAGSEFNIASPKQLGVVLFEDLGLPPIKKTKTGY--STAV 562

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           ++ +     + II  I+E+R ++K+ STYA  L   I +  + +HT Y      TGRL+S
Sbjct: 563 EVLEQLQHSHEIIPLIMEYRTITKLNSTYAKGLVKDITREGK-IHTRYEQTLAQTGRLSS 621

Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           + PNLQNIP + + G+KIR+AF+ +   + ++S DYSQIELR+LAHIA+   +   F++ 
Sbjct: 622 VNPNLQNIPTRIEEGKKIRKAFVPASEDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHD 681

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A+++ GV++++V+  MRR AK +NF I+YGIS F L+  L I R  A ++I +
Sbjct: 682 VDIHTKTASDVNGVSLDQVTSSMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDK 741

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   F G+ +Y+     F +++GYVET+F RR    +IN+    + N+N R A+N+PIQG
Sbjct: 742 YLETFKGVDKYMTDIVEFAKEHGYVETLFNRRRALPDINAKNKIVANLNARIAMNSPIQG 801

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM++V + LE  K+  K+LLQ+HDEL+F+V ++     ++ ++  ME+A   
Sbjct: 802 TAADIIKIAMVNVFEYLEKTKVDAKLLLQVHDELIFDVNKDIEEDFTKEMIKIMEEAA-- 859

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
             NL V LK       +W + 
Sbjct: 860 --NLDVQLKAEASSGASWYDA 878


>gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
 gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
          Length = 1042

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/1032 (27%), Positives = 472/1032 (45%), Gaps = 73/1032 (7%)

Query: 4    ENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L +VDG S  +RA++A P       DG   NAI GF  ML ++L++ +     SH A
Sbjct: 16   DRRLLVVDGHSLAFRAYFALPADSFSTSDGQATNAIYGFTTMLAQVLRDEK----PSHVA 71

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            + FD    TFRN++ P YK  R   PE LL QLPL++   +A  I  +E QGFE DDIIA
Sbjct: 72   IAFDVKGGTFRNQMLPQYKGTRDAAPEDLLSQLPLIQEVLKALDISYVERQGFEGDDIIA 131

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEK 178
            T   + E+ GF   ++S D+D  QLV  +  +       K    +  + V  K+ + P +
Sbjct: 132  TLATMGEEAGFETFVLSGDRDAFQLVDDSITVLYPGHHFKDLQHMTPDAVFAKYKVTPGQ 191

Query: 179  MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
               L A+ G+  DNIPG+PG+G   AA  ++EYG L  I+ +A  I  KK  + + +  +
Sbjct: 192  YPDLAAMRGEQADNIPGVPGVGDGYAAKWIKEYGGLAGIVEHADEIGGKK-GQALRDNID 250

Query: 239  TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF--TKLINRVATTYDCDA 296
               L+RK+  L  +V + + L+   L       +      L+F     +  +      + 
Sbjct: 251  QVLLNRKVNALVRNVDLGVSLDEFKLHQPKVDEVKDVFGRLQFGRNTQLRIITAMAVAEG 310

Query: 297  ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ--TPQKLFLER 354
            A+ +           +  A    +             L  Q      E    P  + L +
Sbjct: 311  ADEKLAAAAYGPAPGRKKAASAGVPSSPAESAKATPLLPGQAEGFEEEVDLNPADVDLIQ 370

Query: 355  LQKLSQYPINNDSYTKIVNTKDIQQ-------WVQKLETIGSASFKIITDTMDAFHSKPI 407
               +   P       K    +  ++       W+  L    S+S        D       
Sbjct: 371  PDLVPLPPAPVFGAAKKEREEAWEKRLTAATDWITDLTRAPSSSQTGRKKQTDQARRNDH 430

Query: 408  AIAISTLD----QKDDTSFKVETIFIDLSVH---TSQDSTGKNTLTKEILSYLKKFFENE 460
             ++         +K  +  +  TI             D       +  ++  L +    E
Sbjct: 431  DLSFFLHARGRVEKGASRLQSLTIMTAEGHSLVLHHDDFDFYRQGSDLLIEALDQLLRQE 490

Query: 461  HFLKIGHNIKYDKLV---LHRYGISMRG-----FEDIMLMSYVLDSGRSSH--DIASIAQ 510
                + H+ K    +   L   G  + G       D  L +Y+     ++    +   AQ
Sbjct: 491  SDHIVLHDFKRWLHLTSNLRNQGQPLGGPDFLPVADTKLEAYLAQPDATAKVDGLRHYAQ 550

Query: 511  KWLSYTRKEILKSRKSSIPIDKI--SDSQVQEH---------------------AIENSN 547
            K+L     E  +        D    SD +  E+                        +  
Sbjct: 551  KFLHLDVGETKEKTSEQGAFDLGLESDEETGENSAPSPEPADPRQEEREREETDCALDCA 610

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
             +  L  L  P L     +++ + ++ P+  V+S ME+TG  +DQ  L+Q+    S    
Sbjct: 611  YLRALHDLFHPVLASRGQINLLKTIELPVSRVLSAMEMTGAGVDQSRLEQMRESFSAQAE 670

Query: 608  SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------N 661
              ++  +  +G++ NL SPKQL  +LF  +      KTK+G   T A  L+++      N
Sbjct: 671  QAQQIAWQEAGKEINLQSPKQLQAVLFDDMGLTPTKKTKSGGRTTNAAALQELYMRSIHN 730

Query: 662  CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               N  +  +L  R+++K+K     +L + I+ R  R+HT +      TGRL+S +PNLQ
Sbjct: 731  ERANAFLGALLRHREVNKLK-QIVQTLIDAIDVRDSRIHTTFEQTVAATGRLSSTDPNLQ 789

Query: 722  NIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
            NIP +   G++IR AF++    + L+S+DYSQ+ELR++AH++    L + F +  D H+ 
Sbjct: 790  NIPNRNVEGREIRGAFVASDGFESLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKY 849

Query: 781  VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            VA+ ++G+ I+++S   R H K +++ + YG+S + LA QL I  +EA     +YF  F 
Sbjct: 850  VASLVYGIPIDQISSDQRSHIKAMSYGLAYGLSTYGLAQQLGISPAEADILRAKYFSTFG 909

Query: 841  GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
             +H+Y+E      ++ GY ET+FGRR ++ ++ S +  +R+  ERAA+NAPIQGSAADI 
Sbjct: 910  KVHDYLESLVAQAKKRGYTETMFGRRRYFPDLRSSRRQLRDAAERAALNAPIQGSAADIM 969

Query: 901  RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
            + AM   ++ L+D  + ++++LQIHDELV E+   E    + ++  +ME A    + L V
Sbjct: 970  KIAMKKAYQDLKDAGVKSRIILQIHDELVVELAPGEQEQVTAMVKEAMEHA----VKLAV 1025

Query: 961  PLKVNIKVSNNW 972
            PL V+  V ++W
Sbjct: 1026 PLDVSTGVGSDW 1037


>gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
 gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
          Length = 907

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/981 (29%), Positives = 481/981 (49%), Gaps = 83/981 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   + ++D   F +R+FYA P   R  DG P   + GF N +  L    +KE  + +
Sbjct: 1   MSK--TVTVIDTFGFFFRSFYALPQHLRTKDGFPTGLLTGFTNFIATL----QKEHDSDY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                D    TFRNEI  +YKANR   P  L  QLP+        G   +   GFEADDI
Sbjct: 55  IIFAIDSKGETFRNEIDVNYKANRSAPPPELTQQLPVAIEWINKMGYKTLGKSGFEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IAT     +++G+ + ++S DKDL QL+      + D +K++ ++ +    K+G+ P++ 
Sbjct: 115 IATVVRCVKEKGYKIRVVSHDKDLYQLIDDDKVVIVDAIKKKYVNEKACYDKYGVTPKQF 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           +  Q++ GDS DN+PG+ GIG   A  LL+EYG L+NI  +   IK    ++ ++E  E 
Sbjct: 175 IDYQSILGDSADNVPGVKGIGKVGAEKLLKEYGTLDNIYAHIDEIKGAT-QKKLIESREQ 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +S++LV L  +V      +    E+        FL   +      + A      A N+
Sbjct: 234 AYMSKELVTLHPNV---FECKEFDFEEYKMDVENPFLNIYDELVKYEQNAILRTLHAKNM 290

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
               +     EN     E               S +D+++K+  + T             
Sbjct: 291 ----VTPEQKENAQKLQE---------------SCTDKSAKLEFKAT------------- 318

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                      + + K++   + KL      +F   T  +D  ++K +  + S  D+ + 
Sbjct: 319 ----------LLSDEKELNSVLNKLNKETIVAFDTETTGLDYINNKLVGFSFSFNDE-EA 367

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   ++ ++   S+D              +++ F   +   +GHNIK+D   + R+
Sbjct: 368 YYVPFGHFYLGVADQVSKDV---------AKQAMRRIF---NSKVVGHNIKFDLHFVTRF 415

Query: 480 --GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
                +  + D M+++++++   S+  +  ++ K L +       + K       +    
Sbjct: 416 LEEKDLPVYCDSMILAWLINP-ESALSLDKLSDKLLGHEMVHFKDTVKKGENFSTVELDD 474

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER---LDKPMIDVVSQMEITGIQIDQDL 594
              +A E++ +  +L+ L   KL ++   H+ E    ++ P +  + +ME  GI++D   
Sbjct: 475 ACVYAAEDAFITRKLYKLFLKKLELQDATHLIEEAKTVEIPFMHTLLKMEEEGIEVDTGF 534

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L++   E+ + L  L ++IY+L+G +FN++S +QLG+ILF KL  P G KTKTG   +T 
Sbjct: 535 LEKFLVEVKETLEYLTKSIYELAGSEFNINSTQQLGNILFEKLGLPVGKKTKTGY--STN 592

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR-TQRVHTFYSLASTMTGRL 713
           + +       +PII  +LE+R++ K+ STY D L    N+    R+HT +    T TGRL
Sbjct: 593 EKVLSSLKDKHPIIPKLLEYREVHKLYSTYIDPLLKLANEDEQHRIHTSFVQTGTATGRL 652

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S  PNLQNIP +T LG KIRR F++   KK I  DYSQ+ELR+LAH ++   L   F +
Sbjct: 653 SSKNPNLQNIPTRTPLGAKIRRGFVAGEGKKFIGIDYSQMELRLLAHFSQDPVLVNAFMH 712

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A  +FG   E+ +   R  AKT+NF ++YG+ P +L+  L I   EA + I+
Sbjct: 713 DKDIHLQTAIVLFG---EEEAAHKRNIAKTVNFGLLYGMGPKKLSDTLGITTKEAKEIIE 769

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF  F  +  Y        ++ GYVET+ GRR ++D  N+     R   ER ++N+  Q
Sbjct: 770 KYFESFHTVKAYFRSIVESSKEKGYVETLLGRRRYFDYENAT-PMYRAAYERESVNSVFQ 828

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GS +D+ + +M  +H  + + KL  KMLLQIHDEL+FEV E+            M+    
Sbjct: 829 GSVSDVIKLSMNKIHTIINEEKLQAKMLLQIHDELIFEVDEKVADELGNRFRDIMDH--- 885

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             + L +PLK ++ + +NW E
Sbjct: 886 -IVELNIPLKASLNIGDNWGE 905


>gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 932

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/980 (27%), Positives = 467/980 (47%), Gaps = 90/980 (9%)

Query: 20  FYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYP 78
           F+A P+ +     G   NA+ GF  ML +++     +    H AV FD    TFRN + P
Sbjct: 11  FFALPVENFSTSAGQATNAVWGFATMLSQVIDAEHPD----HLAVAFDVKGGTFRNTMLP 66

Query: 79  DYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII 138
            YK  R   PE LL QLPL++    A G+  IE  G+E DD+I T   + +K G+   ++
Sbjct: 67  QYKGTRDAAPEDLLTQLPLIQRMLTALGVTFIEKPGYEGDDVIGTLASMGDKAGYRTLVL 126

Query: 139 STDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           S D+D  QL++    +          + +  + V++K+ + PE+   L AL G++ DNIP
Sbjct: 127 SGDRDAFQLINDNITVLYPGHHFKDLKHMTPDAVVEKYHVTPEQYPDLAALRGETADNIP 186

Query: 195 GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP 254
           G+PG+G   AA  +  YG L+ I+ +A  I  KK  E +    +  +L+R +  L  D+ 
Sbjct: 187 GVPGVGDGFAAKWINLYGGLDQIIEHADEIGGKK-GEALRANIDQVKLNRSVNALVRDLD 245

Query: 255 ITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANIEPVVLDINTTENKG 313
           + + +E L     +  +L      LEF  +  NRV  T++      +PV  D +      
Sbjct: 246 LGVSIEDLTFGQVDANQLNQLFTRLEFGIRTKNRVLRTFNAGKPTNDPVQQDESG----- 300

Query: 314 IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373
                                                            +    Y  + +
Sbjct: 301 ------------------------------------------------KLEIPQYETVDS 312

Query: 374 TKDIQQWVQ--------KLETIGSASFKIITDTMDAFHSKPIA--IAISTLDQKDDTSFK 423
            + ++ WV+         L      + K         H+K  A  +A S + Q +  S  
Sbjct: 313 PEALEAWVRDNLPMPNGHLHDEREIAPKTTPSGFAIDHTKQCAQSVAHSWVLQVEGESKP 372

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               +  L +     +   N + +++ S L+   +  H   + H  K    +L   G+++
Sbjct: 373 GNAAYASLMIAAHDKAIRTNRVDRDMASQLQTVLDEHHQSMVVHGYKEQSHLLESVGVAL 432

Query: 484 -RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSRKSSIPIDKISDSQVQEH 541
            +   D  L  Y++     +  +   A  +L  +  ++   + + ++  D+  DS  +  
Sbjct: 433 PKPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHIEEQSEGATQGTLDFDEPDDSAQRND 492

Query: 542 --AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
                ++ ++  L   L   L   +   + E ++ P+  V+  ME  G Q+D + L  + 
Sbjct: 493 NQLPRHTAIVGLLARKLADSLDQREQFSLLESVEIPVSRVLYGMEHAGAQVDMNRLMSMR 552

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +++ +    +E  +  +GE+ NL SPKQL  ILF  +      KTKTG + T A  L+ 
Sbjct: 553 EQLAADANYAQETAWQYAGERVNLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAAALQV 612

Query: 660 I------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +      N      +  +L  R+ +K+K     +L +  N+   R+HT +      TGRL
Sbjct: 613 LRDRSCGNDRACQFLDALLLHREKNKLK-QIVQTLIDATNRSDGRIHTTFEQTVAATGRL 671

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S++PNLQNIP +   G++IR AF+     + L+S+DYSQ+ELRI+A ++    L + F 
Sbjct: 672 SSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFR 731

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D H+ VA+ ++GV +++++P  R H K +++ + YG+S + L+ QL I   EA    
Sbjct: 732 SGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAYGLSTYGLSQQLGIKPGEAESLK 791

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           ++YF  F  +HEY+E   +  R+ GY ETI+GRR ++  + SP  ++R+  ERAA+NAPI
Sbjct: 792 RQYFATFGKVHEYLESLVSSAREKGYTETIYGRRRYFPGLKSPNRAVRDAAERAALNAPI 851

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI    +L +  LA++++LQIHDELV EV   E    + ++  +ME A 
Sbjct: 852 QGSAADIMKIAMIRADDALREAGLASRIILQIHDELVVEVAPGEAERVTALVKDAMEHA- 910

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              +++ VPL V+  + ++W
Sbjct: 911 ---VDMAVPLDVSTGIGSDW 927


>gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
 gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
          Length = 875

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/977 (32%), Positives = 480/977 (49%), Gaps = 110/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHATFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  AE +G  V II+ D+DL QL S  T +Y T K                   +  ++ 
Sbjct: 117 TKKAEADGLEVAIITGDRDLTQLASDKTTVYITKKG------------------IADMET 158

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T +++     +          L+   G+  + +     + +K   + + E+      S 
Sbjct: 159 NTPETLKEKYNLTPAQIIDMKGLM---GDSSDNIPGIPGVGEKTALKLLHEFGG----SV 211

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           + V+   D             + +G +L   +   +   ++++   T + D+    P+  
Sbjct: 212 ESVLEHAD-------------EISGKKLKEKVLENKELAILSKELATINVDS----PIEC 254

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            I +T+  G   E  I     +K  QF++L         E+  +   L            
Sbjct: 255 TIESTKYDGYQTEKVIP---LLKEMQFTTLLKNIEGDTPEEAKELKELTF---------- 301

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                ++V     + +       G  +  +  +  +   +  I                 
Sbjct: 302 -----EVVTELTEKHF------GGKTALYVELENDNYHTANFIG---------------- 334

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L++H+ + +      T E     K++ E++   K+ ++ K   + +HR G ++ 
Sbjct: 335 ------LTIHSDKGTYFFAKETAENSPAFKEWIESDAS-KVVYDAKKAMIAMHRLGYAVS 387

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQ 539
           G   DIML SY+L+   S  D  S+A +      +       K  K S P + +    V 
Sbjct: 388 GITFDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESV----VA 443

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  I  L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ + 
Sbjct: 444 PHLARKAVAIAILEKRLLDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLEDMK 503

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E++  L +LEE+I+ L+ E+FN++SPKQLG ILF KL  P+  KTKTG   +TA D+ +
Sbjct: 504 VELAGRLKTLEESIHSLAEEEFNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADVLE 561

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PN
Sbjct: 562 SLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPN 621

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH
Sbjct: 622 LQNIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIH 681

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R +A D+I RYF  
Sbjct: 682 TKTAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVS 741

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAAD
Sbjct: 742 YPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAAD 801

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AMI +   L+  KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L
Sbjct: 802 IIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VEL 857

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+    + W + 
Sbjct: 858 SVPLKVDSAFGDTWYDA 874


>gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
 gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
          Length = 882

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/981 (28%), Positives = 470/981 (47%), Gaps = 117/981 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  L L+DG S  +RAFYA P+ +     G   NA+ GF +ML  ++   R ++    
Sbjct: 6   SNKTRLLLIDGHSMAFRAFYALPVENFSTSGGQHTNAVYGFLSMLSNIVSEERPDA---- 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR E++PDYKA R  +PE    Q+ ++R   +  GI  +  + +EADDI
Sbjct: 62  IAVAFDVGRKTFRTEMFPDYKAQREAVPEEFKGQVDIIRDTLETLGITTLSRENYEADDI 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           +AT    A  + +   I++ D+D +QLV+ +T +   +K      +   E V  K+G+ P
Sbjct: 122 LATLATQA--QDYETLIVTGDRDYLQLVTDSTTVLYPMKGVSTLHRFTPEAVEDKYGLTP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIP +G KTA   + +YG+L  ++ +A  I       N  E 
Sbjct: 180 VQYPDFAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLATLVDHAEEI-NGVVGNNFRER 238

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  ++                                        + + ++ T  D D 
Sbjct: 239 IEQVQM---------------------------------------NRKLTQMITDMDLDV 259

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +    +    +      E E   +   +           +   +  TP         
Sbjct: 260 GPDDLAFREAKVADVAAKFDELEFGTNLRDRVLSAIPNDGAEAAEQAADTPD-------- 311

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         +  T D     + L      +  +  + +        AIA      
Sbjct: 312 --------------VELTIDDASLSEWLPGREHVAVYVQGEGI-PSQGDASAIAF----- 351

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                       +D   H  Q   G+ +  +E    L ++ E+    K  H  K    +L
Sbjct: 352 ------------VDREHHGLQVELGELSADEE--KALVQWLESSA-PKYFHAAKAAFHML 396

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              GI + G   D  L +Y+L  G+ +++++ + Q+ L  +         +S  +  + +
Sbjct: 397 AGRGIELNGLAHDTALAAYILRPGQRTYELSDVYQRHLQKSL------GAASEQMSLLDN 450

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           S +    ++ +  I++L   L  +L       +Y  L+ P++ ++++ME TGI +D D+L
Sbjct: 451 SSL----VDQAAAIMELAEKLTTELQDIDSFELYTDLELPLVTILARMEATGIAVDVDIL 506

Query: 596 KQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           +       + +   E +  +L+G+ K NL+SPKQL  +LF     P   KTKTG + T A
Sbjct: 507 ETQKDAFVEQVAEQERSARELAGDDKLNLNSPKQLQKVLFETFDMPKTKKTKTG-YSTAA 565

Query: 655 QDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +++EQ+     +P + ++L  R+  K+K+T  + L   +     R+HT ++   T TGRL
Sbjct: 566 KEIEQLAIKHPHPFLDHLLAHREYQKMKTTL-EGLIKTVQPDG-RIHTTFNQTVTSTGRL 623

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIP++T+ G++IR AFI     ++L++ADYSQIE+R++AH++    L + ++
Sbjct: 624 SSTEPNLQNIPVRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYK 683

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA   +
Sbjct: 684 AGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIM 743

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RF G+ +Y++      R++GY  T+FGRR +  E+NS     R   ERAA+NAPI
Sbjct: 744 ESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPI 803

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI V ++L D  + +++LLQ+HDELV EV   E     +I+   M+ A 
Sbjct: 804 QGTAADIIKVAMIRVDRALRD--MKSRVLLQVHDELVVEVAPGEADQVREILEREMDSA- 860

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
              I L VPL+V+     +W 
Sbjct: 861 ---IELNVPLEVSAGAGTDWD 878


>gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
 gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
          Length = 877

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/987 (32%), Positives = 479/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE+ GF +TIIS DKDL+QL    T +  + K     E    E++++K GI 
Sbjct: 118 IIGTLDKLAEQNGFDITIISGDKDLIQLTDEHTVVELSKKGVAEFEAFTPEYLMEKMGIT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  IG KT   LL E+G+L                E I E
Sbjct: 178 PTQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSL----------------EGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D +
Sbjct: 222 NIDGMKASK------------------MKENLINDKEQAFL---------SKKLATIDTE 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    PV + +      G  +E        +   Q      Q   ++S    + L    +
Sbjct: 255 A----PVEIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAESLDFTIV 306

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            ++SQ  ++ +S                        F       +      +  + S  D
Sbjct: 307 DQISQDMLSEES-----------------------IFHFELFGENYHTDDLVGFSWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L +E     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQE--PIFKAFLE--KTPLRVYDFKKAKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R+G+ ++    D  L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LNRFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI++
Sbjct: 438 ---EREKFLEHLARKIAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIKV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL+ P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLELPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEREDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+  L I R  A
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKGA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537]
          Length = 896

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/989 (31%), Positives = 497/989 (50%), Gaps = 112/989 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   L L+DG+S  YRAFYA    L R   HDGL  NA+  F N + +++     +  
Sbjct: 1   MTK-PTLLLIDGNSLAYRAFYAMYKQLDRMVTHDGLHTNALVAFNNFMDQIVDPMSPD-- 57

Query: 58  ASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
             +  V +D      TFR E+Y +YK+ R K P  L  QLP +R      G+   E  G 
Sbjct: 58  --YAVVAWDADSGKSTFRGELYSEYKSGRAKTPTELAEQLPYMREMVAFHGLRNYEQHGL 115

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADDII T++   E  G++VTI++ D+DL QL +    +  T K     E+   E++ +K
Sbjct: 116 EADDIIGTFSREGEALGYSVTIVTGDRDLTQLATDNITVNVTKKGVTEIERFTPEYIAEK 175

Query: 172 W-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           + G+ P++++ ++ALTGD+ DN PG+  IG KTA  LL +Y +L+++             
Sbjct: 176 YNGLTPQQIIEMKALTGDTSDNYPGVTKIGEKTALKLLAQYQDLDHLYA----------- 224

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
                  +  + S+                  + E+    R  +F          +R   
Sbjct: 225 -----NIDQMKASK------------------MKENLIKDRDQAFC---------SRKLA 252

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T   DA    P+       E +GI  +  I    T+   Q   L+   +   S Q   + 
Sbjct: 253 TILTDADMALPLAE----FEYRGIDFDRLIPFYETLDFKQQ--LAKIRALKKSGQLGSED 306

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
             E    LS   + +++   +                   +  I     +      I   
Sbjct: 307 QSEVEDNLSLTILQSNNLHAVTELGHQ------------VALHIEIAGDNYHTDDMIGFV 354

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I    +    S     +                         +K   E+    K  +N+K
Sbjct: 355 IGDEQRGYFASRDFSLLQSP---------------------EIKAIIESPTVEKRVYNVK 393

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKS 526
             +++  R  I +R    D +L +Y+LD+  ++ ++A++AQK+   L        K  K 
Sbjct: 394 AQRVLFKRLDIELRNATFDFLLAAYLLDTTDNNAELATLAQKYDIYLQLDEDIYGKGAKF 453

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           S+P D+    +V  H    ++ + QL   +  +L   + L +Y+ ++ P+  V++ ME T
Sbjct: 454 SVPTDE---GRVLMHIAHKADTLNQLIEPVMVQLKEHEQLALYQDIELPLASVLADMEYT 510

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++DQ+ L+++   +   ++ +E+ IY+ +GE+FN++SPKQLG +LF K+  P   +TK
Sbjct: 511 GIRVDQNQLQEMGESLDAQIVDVEKAIYEEAGEEFNINSPKQLGILLFEKMGLPVIKRTK 570

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   +TA ++ +      PI+  IL++RQL+K+KSTY D L   + ++  ++HT Y   
Sbjct: 571 TGY--STAVEVLEKLADQAPIVAYILQYRQLAKLKSTYIDGLLAVVYRQDSKIHTRYLQT 628

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++T+ G++IR+AF+   P  ++  ADYSQIELR+LAH+    
Sbjct: 629 LTQTGRLSSVDPNLQNIPMRTEAGRQIRKAFVPSEPNWQIFGADYSQIELRVLAHMTGDK 688

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + F N  DIH   A  +FG+N +  ++   RR AK +NF I+YGIS F L+  L I 
Sbjct: 689 NLQRAFLNDEDIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYGISDFGLSNNLGIS 748

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R+EA  +I  YF +FP +HE++E  K    + GYVET+  RR +  +I++   + R+  E
Sbjct: 749 RAEAKRFIDTYFEKFPQVHEWMENAKTLAHEQGYVETLAKRRRYLPDIHAKNFNRRSFAE 808

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N PIQGSAADI + AMI +++ L +H L  +MLLQ+HDEL+FE P  EI    +I+
Sbjct: 809 RTAMNTPIQGSAADIIKIAMIKMNQVLHEHHLQARMLLQVHDELIFEAPTSEIPELEEIV 868

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              M+ A    + L VPLKV  +  +NW 
Sbjct: 869 PQVMDSA----VALDVPLKVESRHGSNWY 893


>gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R]
 gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 880

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/974 (28%), Positives = 461/974 (47%), Gaps = 106/974 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  +RAF+A P  +     G   NA+ GF +ML  LL++ +     +H AV FD
Sbjct: 1   MLIDGHSMAFRAFFALPAENFSTSGGQATNAVYGFLSMLSTLLKDEQ----PTHVAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR +++P YKA R   P     Q+ +++      GI  IE   FEADD+IAT + 
Sbjct: 57  VGRKTFRTDMFPAYKAQRDATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDVIATLSV 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            A+  GF   I++ D+D  QLV+ TT +   +K      +   E V +K+G+ P +    
Sbjct: 117 AAKPLGFKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTPRQYPEF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+P IPG+G KTA   + +Y  L+N+L +A  IK  K   ++ E  E  R+
Sbjct: 177 AALRGDPSDNLPNIPGVGEKTATKWIAQYETLDNLLDHADEIKG-KVGASLRERIEQVRM 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +RK                                    T+++  +      D  +++PV
Sbjct: 236 NRK-----------------------------------LTEMVKDLELPLGPDDFDMKPV 260

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            +     +   +   T +            S++        +                  
Sbjct: 261 QVAEVAAKFDDLEFGTNLRERVLAVVKAEGSVAPVEEVEAEQV----------------- 303

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                        D Q   Q L      +  +    + A  +   A A++  D K     
Sbjct: 304 -----------VVDTQSLAQWLPARAGQALALALTGV-AKPAGGDAYALAIADTKH---- 347

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
               + +DL+  +++D              L  +  +E+  K+ H  K    +L   G  
Sbjct: 348 --HAVLVDLADISAEDE-----------KALATWLASEN-PKMLHGAKAAYHMLAGRGFE 393

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + G   D  + +Y+L  G+ ++++A + Q+ L           + ++ +D   D  +   
Sbjct: 394 LHGVVHDTAIAAYLLRPGQRTYELADVYQRHLQRQLSTNDNGGQLAL-LDAADDQSL--- 449

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            +++   IL+L   L  +L   +   +Y  L+ P+  ++++ME  GI +D   L++    
Sbjct: 450 -VDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKT 508

Query: 602 ISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
               +   EE   +L+ +   NLSSPKQL  +LF     P   KTKTG     A+     
Sbjct: 509 FIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALA 568

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +P + ++L  RQ  K+K+T  + L   +     R+HT ++     TGRL+S +PNL
Sbjct: 569 IKNPHPFLDHLLAHRQYQKMKTTL-EGLIREVAPDG-RIHTTFNQTVASTGRLSSTDPNL 626

Query: 721 QNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G+KIR  F+       L++ADYSQIE+R++AH+++   L + +    D+H 
Sbjct: 627 QNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 686

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            V +++F V I+ V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++ YF RF
Sbjct: 687 YVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQQLSIPAGEAKQIMESYFERF 746

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+  Y+ +     R+ GY ET+FGRR +  E+ S     R   ERAA+NAPIQG+AADI
Sbjct: 747 GGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVARENAERAALNAPIQGTAADI 806

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI V +SL++  + +++LLQ+HDELV EV   E+    +I+   M+ A    I L 
Sbjct: 807 IKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNA----IKLS 862

Query: 960 VPLKVNIKVSNNWQ 973
           VPL+V+     NW 
Sbjct: 863 VPLEVSAGDGVNWD 876


>gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
 gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
          Length = 877

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/992 (32%), Positives = 499/992 (50%), Gaps = 133/992 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+  N L L+DGSS  +RAF+A        +  +GL  NAI  F  ML  L++       
Sbjct: 1   MENNNRLLLIDGSSVAFRAFFALYNQIARFKAPNGLHTNAIFAFHTMLSSLMERIE---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  +EA
Sbjct: 57  PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKMAEAPNVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LE                
Sbjct: 177 MGLTPAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLE---------------- 220

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N+ E  ++ + S+                  + E+    + ++FL     T  I      
Sbjct: 221 NLYENVDSLKASK------------------MKENLIADKEMAFLSQQLATINIK----- 257

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS--LSDQTSKINSEQTPQK 349
                    P+ + ++ T  K   I+        +  +QF S  L++   ++  E+   +
Sbjct: 258 --------APIEIGLDDTLLKDKKIDELSQFYDEMGFAQFKSKLLAEAGGEVTDEKVVDE 309

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
           +  E         +N+ S ++ VN  D               F + T   +    + +A 
Sbjct: 310 IDFE--------IVNDGSISEKVNADDF--------------FYLETLGENYHREQIVAF 347

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A    +                          K  ++K I            F +  ++ 
Sbjct: 348 AWGNAE--------------------------KIYVSKNI-----DLLTKMKFPENTYDF 376

Query: 470 KYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ----KWLSYTRKEILKSR 524
           K ++++L    I +     D ML  Y++ S    + I++IA+      L+   +   K  
Sbjct: 377 KKNRVLLSHLDIELPLVKFDAMLAKYLI-STTEDNKISTIARLFNSGHLATDEEIFGKGT 435

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K ++P     D+ + EH      V+      +  +L+  +  H+   ++ P+ +V+++ME
Sbjct: 436 KIALP----DDAVLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKME 491

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           ITGI + Q+ L+++ AE  + L SL   IYDL+GE+FN++SPKQLG ILF KL+ P G K
Sbjct: 492 ITGIAVSQNTLEEIGAENEEKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKK 551

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           TKTG   +TA D+ +     +P++  ILE+RQ++K++STY   L   I    + +HT Y 
Sbjct: 552 TKTGY--STAVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGK-IHTRYV 608

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
              T TGRL+S++PNLQNIP++ + G+KIR+AF+      L+S+DYSQIELR+LAHI+  
Sbjct: 609 QDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGD 668

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             L   F++  DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F LA  L I
Sbjct: 669 EHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGI 728

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R +A +YI+ YF R+PGI  Y+E      R  G+VET+  RR    +IN+   ++R   
Sbjct: 729 TRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFA 788

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN+PIQGSAADI + AMI++ K+L      +K+LLQ+HDE++ +VP EE+     +
Sbjct: 789 ERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKAL 848

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +  +ME+A    I L VPLKV+      W E 
Sbjct: 849 VKQTMEEA----IELAVPLKVDENTGKTWYEA 876


>gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805]
 gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805]
          Length = 988

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/1029 (28%), Positives = 481/1029 (46%), Gaps = 103/1029 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLL----SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           ++  L LVDG S  +R+FYA            DG P +   GF   L     ++ K    
Sbjct: 6   EKPLLLLVDGHSLAFRSFYAFSKGGEGGLATKDGRPTSVTYGFLKALL----DNSKGLKP 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGFEA 117
              A+ FD    TFR++   +YKA+R   PE+    L  ++   +    +P     G+EA
Sbjct: 62  EGVAIAFDTAEPTFRHQADANYKAHRDVAPEVFFQDLDQLQTILRERLKLPLCLAPGYEA 121

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----------LYDTVKEEKIDIEH 167
           DD++ T    A   G+ V I+S D+DL QLV                  +     ID   
Sbjct: 122 DDVLGTLANRAATSGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPTLIDEAG 181

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ- 226
           V+ K G+ P+K+V L+ALTGDS DNIPG+ G+G KTA  LL+E  +L+ +      ++  
Sbjct: 182 VVAKLGVMPDKVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENNDLDGVYRVLEEVEAE 241

Query: 227 ----------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                        +  +    + A LSR L  +  D+P+      L L   +G  L   L
Sbjct: 242 GPKASRGAVKGALKGKLGADRDKAYLSRHLAEILVDIPLPEEPV-LELGAVDGEGLEEQL 300

Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
           + LE   L+ ++ +               + T  + G+     +  D + K S     + 
Sbjct: 301 QELELNSLVRQIPSF--------------VATFSSGGLTANAHLLEDASTKRS-----TS 341

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS----ASF 392
            ++  +++  P     E         +       I +   +Q  +Q+L    +     + 
Sbjct: 342 NSAVASTDPAPAADIAESTLPQLTPLV-------ICSQDQLQGLMQQLMGCTNPTEPVAV 394

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
              T  ++ F ++ + I +       D +      +I +     +   G     + +L  
Sbjct: 395 DTETTDLNPFKAQLVGIGVCWGPWLSDLA------YIPVGHQAPE---GSQLPLEVVLEQ 445

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           L  +  +    K   N KYD+L+L R+G+ + G   D +L  Y+ D+    H +  +A++
Sbjct: 446 LAPWLSSPKHPKALQNAKYDRLILLRHGLLLGGVVMDTLLADYLRDAAA-KHSLDVMAER 504

Query: 512 WLSYTRK---EILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EK 564
               T     +++   K        ++   Q   +   + ++  +L L LR +L    ++
Sbjct: 505 DYGITPTVFSDLVGKPKDGKASCFAEVPIDQAALYCAMDVHLTRKLALDLREQLQTSGQQ 564

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L ++ +R++ P+  V++ ME TGI+ID   L  +S E+ + L  LE N    +G  FNL+
Sbjct: 565 LTNLLDRVELPLEPVLALMEATGIRIDLTYLDTLSKEMGETLTRLEANAKQAAGVDFNLA 624

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG++LF  L        +T    +T   +      D+P++  +LE R LSK+KSTY
Sbjct: 625 SPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLADDHPVVPLVLEHRVLSKLKSTY 684

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D+LP  +   T RVHT ++ A T TGRL+S  PNLQNIPI+T+  ++IR+AF+      
Sbjct: 685 VDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEYSRRIRKAFLPQEHWT 744

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+SADYSQIELRIL H++    L Q + +  D+H + A  +  ++ ++++   RR  KTI
Sbjct: 745 LLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LDKDEITADERRLGKTI 802

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF +IYG+   R A +  + ++EA +++ +Y  R+P +  ++E  +      GYVETI G
Sbjct: 803 NFGVIYGMGAQRFARETGVSQAEAKEFLSKYRERYPKVFAFLELQERLALSRGYVETILG 862

Query: 865 RRIHYDEIN------------------SPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           RR  +                      + +  +     RAA NAPIQGS+ADI + AMI 
Sbjct: 863 RRRPFHFDRNGLGRLLGKDPFEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKLAMIQ 922

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           +  +L+   L  ++LLQ+HDELV EV    +     ++V +ME A    + L VPL    
Sbjct: 923 LQAALQQQSLPARLLLQVHDELVLEVEPSALEDVKALVVSTMETA----VELSVPLVAET 978

Query: 967 KVSNNWQEE 975
              +NW E 
Sbjct: 979 GSGSNWMEA 987


>gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
 gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
          Length = 871

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/981 (29%), Positives = 479/981 (48%), Gaps = 125/981 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG S + RAFY  P L+   +GL  NAI GF  +++KLL+  + E    +  V F
Sbjct: 4   KIVLIDGHSILNRAFYGLPDLTNA-EGLHTNAIYGFLTIMFKLLEEEKPE----YLTVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++Y +YK  R  + + L  Q+P+++   +A  +  IE  G EADD+I T +
Sbjct: 59  DVHAPTFRHKMYAEYKGTRKPMADELRQQVPVIKEVLRAMRVKTIECAGLEADDLIGTLS 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
              E EG  VT+IS D+DL+QL +    +     +      E    + V +++ + P++ 
Sbjct: 119 NRCENEGMEVTVISGDRDLLQLATEHVKIRIPKTKQGKTEIEDYYAKDVEERYQVTPKEF 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD+ DNIPG+P                          I +K   + I +Y   
Sbjct: 179 IDLKALMGDTADNIPGVPS-------------------------IGEKTATKIITQYHS- 212

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                               +  L+  +    ++  +D    + 
Sbjct: 213 -----------------------------IEEAHEHVDELKPPRASKALSEHWDLAVLSK 243

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E   +++              D    +  ++  +L  + + I  ++   K  L R    +
Sbjct: 244 ELATINVK------------ADFPYELSEAKLGNLYTEEAYIFFQKLEFKNLLSRFDVSA 291

Query: 360 QYPINNDSYTKIVNTKDIQQ---WVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTL 414
                 D +  I +  + ++     ++  TIG+  FK + + +  F   +    I +   
Sbjct: 292 PVNKVEDGFKIITSKSEAEKVFVQAEEASTIGAVIFKDLENVLPLFADQAGLGGIGLCFS 351

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
            ++                        K+   + +L  L    E      + H  +  + 
Sbjct: 352 KEESYC-----------------IKVEKDITGEWLLKKLADVAEKAETYAMFHLKESMEQ 394

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           V  R         D+ + +Y+L+  ++++    +A++ L     E            KI 
Sbjct: 395 VTIRNQ---ANCFDVSVAAYLLNPLKNNYTWEDVAREHLGLMIDE------------KID 439

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                  A   S V      +LR KL   K+  ++  ++ P++  +  ME  GI+++ D 
Sbjct: 440 QDM---KACYESYVNYASVEVLRQKLRDTKMDTLFRDIEMPLVFTLFDMEQNGIRVEADA 496

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LKQ   +++  +  LE+ IY+ +GE FN++SPKQLG +LF  +K P G KTKTG   +TA
Sbjct: 497 LKQYGDQLAGKIAELEKEIYEEAGETFNINSPKQLGVVLFENMKLPGGRKTKTGY--STA 554

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +    ++P++  ILE+RQ +K+KSTYAD L N+I     R+H  ++   T TGR++
Sbjct: 555 ADVLEKLAPEHPVVAKILEYRQYTKLKSTYADGLANYIQDDG-RIHGKFNQTITATGRIS 613

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP++ +LG+ IR+ FI     + + ADYSQIELR+LAH +    L Q ++  
Sbjct: 614 STEPNLQNIPVRMELGRLIRKVFIPEEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQ 673

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR+ A+++F +  ++V+PQ RR+AK +NF I+YGIS F L+  L I R EAA YI  
Sbjct: 674 SDIHRITASQVFHIPFDEVTPQQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAKYIDD 733

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PGI  +++      ++ GYV T+FGRR    E++S     R+  ER A+N+PIQG
Sbjct: 734 YFATYPGIKTFLDHAVTHAKEEGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNSPIQG 793

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AMI V++ L+D K+ ++++LQ+HDEL+ E  E E+     I+   ME A   
Sbjct: 794 AAADIIKIAMIRVNQRLKDQKMKSRLVLQVHDELLIEAYEPELDEVQNILKEEMEHAA-- 851

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L+VPL++++   +NW E 
Sbjct: 852 --ELKVPLEIDMHTGDNWYEA 870


>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
 gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
          Length = 892

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/980 (30%), Positives = 491/980 (50%), Gaps = 100/980 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             +FL DG+  +YRAFYA     +   GL  NA+ G   ML K L+        +   V+
Sbjct: 2   GKMFLFDGTGLVYRAFYAIDQSLQTSSGLHTNAVYGLTKMLIKFLKEHISIGKDACVFVL 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
                   R +I   YKANRP  P++LL Q+P V     A GI  ++I+GFEADDIIAT 
Sbjct: 62  DSKGGSKKRKDILETYKANRPSTPDLLLEQIPYVEELVDALGIKVLKIEGFEADDIIATL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +   E +   V II+ DKDL+QLVS    ++   +        D   VI+K+        
Sbjct: 122 SKKFESDFEKVNIITGDKDLLQLVSDKVFVWRVERGITDLVLYDRNKVIEKY-------- 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                            GI  +     L   G+          I   K            
Sbjct: 174 -----------------GIYPEQFKDYLSLVGD------QIDNIPGVKGIGK-------- 202

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                    +T V +      L     N   L   L+ L      +   +    +     
Sbjct: 203 ---------KTAVSLLKKYNSLENVLKNINLLTEKLRRLLEDSKEDLQKSIELVELIYDV 253

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P+ ++ +    +G   +  +     +K  +FSS+  + +             E+L+    
Sbjct: 254 PMDVEKDEIIYRGYNPDKLLK---VLKKYEFSSIIKELN-----------LQEKLE---- 295

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  + N   +++  +++E   + S    T ++D F +K + I+IST++ K   
Sbjct: 296 -----KEYILVDNEDKLKKLAEEIEKYKTFSIDTETTSLDPFEAKLVGISISTMEGK--- 347

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I +S   +     KN     I  +LK+  + + +  +G N+K+D  +    G
Sbjct: 348 -----AYYIPVSHFGA-----KNISKSLIDKFLKQILQEKDYNIVGQNLKFDYEIFKSMG 397

Query: 481 ISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-----IDKIS 534
            S      D M+ +Y+L+      ++  ++ K+L Y      +    ++P        + 
Sbjct: 398 FSPNVPHFDTMIAAYLLNPDEKRFNLEELSLKYLGYKMISFDELVNENVPLFGNDFSYVP 457

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +  E++ E+++V  +++  L  K+   ++  ++  ++ P+IDV+S+ME+ G+  D++ 
Sbjct: 458 LERAVEYSCEDADVTYRIFRKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEEY 517

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK++S +  + +  ++E +++++GE FNL+S  Q+  ILF KL      KT TG++ T A
Sbjct: 518 LKELSKKYQEKMDGIKEKVFEIAGETFNLNSSTQVAYILFEKLNIAPYKKTATGKFSTNA 577

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE+++  ++ I K +LE+R+  K+KSTY DS+P  IN++T RVHT +    T TGRL+
Sbjct: 578 EVLEELS-KEHEIAKLLLEYRKYQKLKSTYIDSIPLSINRKTNRVHTTFHQTGTSTGRLS 636

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S  PNLQN+P +++ G++IR+A         ++ ADYSQIELR+LAH++K   L + F++
Sbjct: 637 SSNPNLQNLPTRSEEGKEIRKAVRPQRQDWWILGADYSQIELRVLAHVSKDENLLKAFKD 696

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH + AA+IFGV+   VS QMRR  K +NF+IIYG+SP+ L+ ++ +  SE    I 
Sbjct: 697 DLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFAIIYGVSPYGLSKRIGLSVSETKKIID 756

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  + G+ EY+++ K+  R+ GYV T+FGRR +  ++ S   +     ER A+N PIQ
Sbjct: 757 NYFRYYKGVFEYLKRMKDEARKKGYVTTLFGRRRYIPQLRSKNGNRVQEGERIAVNTPIQ 816

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI++H  L+   L++KM+LQ+HDELVFEVP+ E+     I+   ME A  
Sbjct: 817 GTAADIIKIAMINIHNRLKKENLSSKMILQVHDELVFEVPDNELEFVKDIVKDEMENA-- 874

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             + L VPLKV++     W+
Sbjct: 875 --VKLDVPLKVDVYCGKEWE 892


>gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1]
 gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I
 gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1]
          Length = 956

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/984 (30%), Positives = 486/984 (49%), Gaps = 84/984 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K + L L+DG +  +R+++A P L+    G   +AI GF  +L +L +    +      
Sbjct: 44  SKPDTLVLIDGHALAFRSYFALPPLNNSK-GEMTHAIVGFMKLLLRLARQKSNQ-----V 97

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD P  TFR+E Y  YK+ R + PE L  Q+  +R    A G P +E  G+EADD+I
Sbjct: 98  IVVFDPPVKTFRHEQYEGYKSGRAQTPEDLPGQINRIRALVDALGFPRLEEPGYEADDVI 157

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+ T +AE +G+ V I+++D+D  QL+     +        I    V +K+G+   + V 
Sbjct: 158 ASLTRMAEGKGYEVRIVTSDRDAYQLLDEHVKVIAN-DFSLIGPAQVEEKYGVTVRQWVD 216

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--NASRIKQKKRRENILEYAET 239
            +ALTGD+ DNIPG  GIG KTAA LLQEYG LE +    +A  +K    R+ +L+  E 
Sbjct: 217 YRALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEKVYEAAHAGTLKPDGTRKKLLDSEEN 276

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS-FLKALEFTKLINRVATTYDCDAAN 298
            + S  L  + TD+P+ I     +    + P +    L  LE   L              
Sbjct: 277 VKFSHDLSCMVTDLPLDIEFG--VRRLPDNPLVTEDLLTELELHSLR------------- 321

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P++L +N  E  G A + ++      +T +    +   +    E    +   E     
Sbjct: 322 --PMILGLNGPEQDGHAPD-DLLEREHAQTPEEDEAAALPAFSAPELAEWQTPAEGAVWG 378

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                 +D    ++     +  V +       +     D              +  +  +
Sbjct: 379 YVLSREDDLTAALLAAATFEDGVAR------PAPVSEPD------------EWAQAEAPE 420

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN--EHFLKIGHNIKYDKLV- 475
           +   ++      L+    +         ++  + L++ F    +    +G          
Sbjct: 421 NLFGELLPSDKPLTKKEQKALEKAQKDAEKARAKLREQFPATVDEAEFVGQRTVTAAAAK 480

Query: 476 -----LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
                L   G  +   +D +L +Y+LD   +  ++  +A+++L               P 
Sbjct: 481 ALAAHLSVRGTVVEPGDDPLLYAYLLDPANT--NMPVVAKRYLD-----------REWPA 527

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D  + + +  H +              P L+ +    +Y+ ++KP+  V+ +ME+ G+Q+
Sbjct: 528 DAPTRAAITGHLLRE-----------LPPLLDDARRKMYDEMEKPLSGVLGRMEVRGVQV 576

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D L+ +S +    L  LE  I++ +GE+F++ SPKQL  +L+ KL+  S  KTK    
Sbjct: 577 DSDFLQTLSIQAGVRLADLESQIHEYAGEEFHIRSPKQLETVLYDKLELASSKKTKLTGQ 636

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           ++TA    +     +PII  +LE+R+L K++ TY D +PN +N  T R+HT ++  +  T
Sbjct: 637 RSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIPNLVNPHTGRLHTTFAQTAVAT 696

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+SL PNLQNIPI+++LG++IR+ FI+     LI+ADYSQIELR+LAHIA    + Q 
Sbjct: 697 GRLSSLNPNLQNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQA 756

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AA++ G++   V    RR AKT+NF ++YG+S  RL+  L IP +EAA 
Sbjct: 757 FVEGADIHRRTAAQVLGLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAAT 816

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+ YF  +PGI  YI  T +F R +GYVET++GRR +   ++S     R   ER A N 
Sbjct: 817 FIEIYFATYPGIRRYINHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNM 876

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AM+ +   L+   +  +MLLQ+HDEL+ E P ++    + +    ME 
Sbjct: 877 PIQGTAADIMKLAMVQLDPQLDA--IGARMLLQVHDELLIEAPLDKAEQVAALTKKVMEN 934

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                + L+VPL V +    NW +
Sbjct: 935 V----VQLKVPLAVEVGTGPNWFD 954


>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
 gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
          Length = 898

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/975 (31%), Positives = 478/975 (49%), Gaps = 87/975 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F++R+++A P L +   G P   + GF N    L+    KE  + +    
Sbjct: 2   KTLTIIDTFGFLFRSYFALPPL-KSPSGFPTGLLMGFAN----LIAQIAKEYRSDYIVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D      R EI  +YKA RP +PE LL QLP+     +  G   I I G+EADD+IA+ 
Sbjct: 57  LDSKEEGIRKEIDANYKAQRPDVPEELLKQLPVALEWIEKMGFKNITIPGYEADDVIASV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            Y A      V IIS DKDL QL+   T L+D +K+++I  E  I K+G+ P + V  Q+
Sbjct: 117 NYFANSHDVFVKIISHDKDLYQLIDGNTFLFDPLKKQEIREEQCIAKYGVSPAQFVDYQS 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DN+PG+ G+G K+A  L++ +G+LE I      +  ++ R  +    E A  SR
Sbjct: 177 LVGDSADNVPGVKGVGAKSAQKLIESFGSLEGIYERLEEVTPERLRGLLEMGREDAYRSR 236

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV LR  +     LE   LE C  P L   L       +   +              VL
Sbjct: 237 ELVRLREHL-----LEDFDLESCRFPSLHPLL------SISGELMDL-------GMKRVL 278

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           +    E + IA  T     ++     F                                 
Sbjct: 279 EKIQKEGEWIAPSTPSAPKSSPLKGNF--------------------------------- 305

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                 + +TK +++ +  L      +F   TD+++   +K +  + S L+ +      V
Sbjct: 306 VRRTELVDSTKRLEELLSSLTPSSVVAFDTETDSLETRSAKLVGFSFS-LEGEVGYYVPV 364

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISM 483
              ++           G     +E    ++K F       +GHN+K+D  +LH   G   
Sbjct: 365 AHSYL---------GAGDQVSLEEARGAIEKIF---SAQVVGHNLKFDLEILHGALGFYP 412

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           +G   D M+++++LDSG     +    ++W  +      K  K      +++  +  E+A
Sbjct: 413 KGRIGDSMILAWLLDSGAPV-GLDFQMKRWFGHEMIPFEKMVKKGETFAQVALEEAAEYA 471

Query: 543 IENSNVILQLWLLLRPKLIV---EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            E++    +L+  L  +L     E LL + E L+ P I  + +ME  GI++D +   +++
Sbjct: 472 GEDALATYRLYFRLEEELKKRGCESLLGLAESLEFPFIHTLIEMEERGIRVDTEFFARLN 531

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           AE+   +  L   ++  +G +FNL+S +QLG +LF KL  PSG KTKTG   +T + +  
Sbjct: 532 AEVEVRIRELSGEVFAHAGGEFNLNSTQQLGGVLFEKLHLPSGKKTKTGY--STDEKVLS 589

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEP 718
              G +PII+ ILE+R+L K+KSTY + L    +  + +R++T +    T TGRL+S  P
Sbjct: 590 ELLGVHPIIEPILEYRELFKLKSTYIEPLTRFALQDKNRRIYTSFLHTGTSTGRLSSKNP 649

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP+KT+ G+KIR+ FI+     LIS DYSQIELR+LAH ++   L   F+   DIH
Sbjct: 650 NLQNIPVKTEAGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIH 709

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A +IFG   E+ +   R  AKTINF +IYG+   +L+  LRI   EA  YI  YF  
Sbjct: 710 YETAKKIFG---EREAKAHRGIAKTINFGLIYGMGSRKLSETLRISPKEAKGYIDSYFAS 766

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FP +  +++  + F  ++GY ET+ GRR +++   +P+   +    R A+N   QGSAAD
Sbjct: 767 FPTVKSFLKAQEEFALEHGYTETLLGRRRYFEFQQAPEYQ-KAAYLREAVNCIFQGSAAD 825

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + AM  + +     +    +LLQ+HDEL+FE P+E     ++ +   ME        L
Sbjct: 826 LIKLAMNEIRRRFAQEESLW-LLLQVHDELIFEAPKEHAEALARELALVME----GIHPL 880

Query: 959 RVPLKVNIKVSNNWQ 973
           RVPL+  I +  +W 
Sbjct: 881 RVPLQCGISLGEHWG 895


>gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 895

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/981 (28%), Positives = 452/981 (46%), Gaps = 102/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            ++  L ++DG S  +RAFYA P       +G   NAI GF  ML  LLQ  +     +H
Sbjct: 4   SEKPTLLVIDGHSLAFRAFYALPVDSFVNREGQHTNAIHGFIAMLINLLQQQK----PTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    +FR   YP+YK  R + P     Q+PL+  A  A  I  I  + +EADDI
Sbjct: 60  LAVAFDVSRASFRTREYPEYKGTRGETPPEFAGQVPLLEEALHAMNIQTIAKEDYEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKE----EKIDIEHVIKKWGIP 175
           +AT      +EG+ V ++S D+D +QLV+    L Y  V+     +  D   V +++GI 
Sbjct: 120 LATLARRGVEEGYRVLLVSGDRDTIQLVTDEVTLLYPNVRGVSELKVYDPAAVRERYGIE 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +   + AL G++ DN+ GI  +G KTA   +Q YG + NI+ +A  I      +N+ +
Sbjct: 180 PHQYPEIAALVGETSDNLIGIDKVGEKTAVKWVQRYGTVANIVAHAGEITG-VVGQNLRD 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A  +R+L  L  DV + +    L     +   +      L+F  L++R+  T    
Sbjct: 239 QQENALRNRRLNKLLDDVELPVGPSDLARRPLDENAVRDIFARLQFKTLLDRLLKT---- 294

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                              A E  +   T       ++LSD          P + F+   
Sbjct: 295 -------------------AAEDGMLEGT-------AALSDTGDAGAVTAPPVRAFV--- 325

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG-SASFKIITDTMDAFHSKPIAIAISTL 414
                              +++  W+      G S + ++            +   +++ 
Sbjct: 326 ------------------GEELAHWLSTASAEGESIAVQLEVGPAGQRGPSLVGFGLASA 367

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
            +       V   + D S H                + L ++  +    K   + K    
Sbjct: 368 TET------VYVPWEDGSHHG---------------AALTEWLASPA-RKCFFHAKPQFK 405

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            L R G ++ G   D  + S+++  G +   +A    + L  T          S P   +
Sbjct: 406 TLLRAGFAVDGLAFDTRIASWLVKPGSAPQSLAEQVWEVLGETLPV-------SDPNQLV 458

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +         +  + ++       L  E+   V + ++ P++ V+++ME+ G+ ID  
Sbjct: 459 PLADAVS-PATEAWFVRRVADGQATALD-ERTRAVLDEIELPLVAVLAEMELNGVAIDAV 516

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++   ++     L    Y   G + NL SPKQL  +LF +L  P    TKTG     
Sbjct: 517 ALTRLRDRLTGKASDLAARAYAEIGHEINLGSPKQLQQVLFEELGMPKTRSTKTGYSTDA 576

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A   +      +P +  +L+ R  +K+K    ++L   +     R+HT Y    T TGR+
Sbjct: 577 ASLADLQEKSPHPFLGLLLQHRDATKLK-QIVETLERSVTGDG-RIHTTYDQTGTSTGRI 634

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+T+ G++IR +F+S    + L++ADYSQIE+RI+AH++    L + F 
Sbjct: 635 SSNDPNLQNIPIRTEEGREIRSSFVSGGEDETLLTADYSQIEMRIMAHLSDDPGLIEAFN 694

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+HR V + +FGV  E+V+P MR   K +++ + YG+S F L+ QLRI  SEA + +
Sbjct: 695 AGEDLHRFVGSRVFGVPPEEVTPLMRTKVKAMSYGLAYGLSAFGLSKQLRIETSEARELM 754

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF  + +Y+       R +G+ ETIFGRR  + ++ S    +R   ER A+NAPI
Sbjct: 755 NGYFERFGAVRDYLRNVVEQARLDGFTETIFGRRRPFADLTSTNRVLRENAERQALNAPI 814

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM+ +   + D +L ++MLLQ+HDEL+FEV   E      I+   M  A 
Sbjct: 815 QGSAADIMKIAMLGIAGDMSDQRLGSRMLLQVHDELIFEVAPGEGDALETIVRARMVGAA 874

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
               +LRVPL V I   + W 
Sbjct: 875 ----DLRVPLDVQIGRGSTWD 891


>gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23]
 gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23]
          Length = 875

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/977 (31%), Positives = 474/977 (48%), Gaps = 110/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  AE +G  V II+ D+DL QL S  T +Y                  I  + +  ++ 
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVY------------------ITKKGIADMET 158

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T +++     +          L+   G+  + +     + +K                 
Sbjct: 159 NTPETLKEKYNLTPEQIIDMKGLM---GDSSDNIPGIPGVGEKTA--------------- 200

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                         L+ L         ++   + +   KL  +V    +    + E   +
Sbjct: 201 --------------LKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKELAILSKELATI 246

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           ++++     I    E  +    +T +   L  + +     +  +    E  ++L +    
Sbjct: 247 NVDSP----IECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEEAKELKELSF- 301

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                +IV     + +       G  +  +  +  +   S  I                 
Sbjct: 302 -----EIVTELKEKHF------GGKTALYVELENDNYHTSNFIG---------------- 334

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L+VH+SQ +      T E     +++ E+E   K+ ++ K   + ++R G+++ 
Sbjct: 335 ------LTVHSSQGTYFFTKETAENSEAFREWVESEQ-TKVVYDAKKTMVAMNRIGLAIS 387

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQ 539
           G   DIML SY+L+   S  D  S+A +      +       K  K S P + I    V 
Sbjct: 388 GITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAVYGKGAKRSTPEESI----VA 443

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  I  L   L   L   + L + E L+ P+  V+++ME+ G+ +D + L+ + 
Sbjct: 444 SHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMK 503

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E++  L +LEE+I+ L+GE FN++SPKQLG ILF KL  P+  KTKTG   +TA D+ +
Sbjct: 504 VELAGRLKTLEESIHSLAGEAFNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADVLE 561

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PN
Sbjct: 562 SLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPN 621

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH
Sbjct: 622 LQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIH 681

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  
Sbjct: 682 TKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVS 741

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAAD
Sbjct: 742 YPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAAD 801

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L
Sbjct: 802 IIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VEL 857

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+    + W + 
Sbjct: 858 SVPLKVDSAFGDTWYDA 874


>gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 880

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/983 (29%), Positives = 500/983 (50%), Gaps = 117/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG S + RAFY  P LS    G+  NA+ GF N+++K+L     E  A + AV 
Sbjct: 2   KKLVLIDGHSILNRAFYGVPELSNSQ-GVHTNAVYGFLNIMFKVLD----EEAADYIAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR++ Y +YK  R  +P+ L  Q+PL++    +  IP +  +G+EADDII T 
Sbjct: 57  FDLSAPTFRHKAYAEYKGTRKSMPDELREQVPLIKEVLSSMNIPILTKEGYEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID------IEHVIKKWGIPPEK 178
               + +   V+++S D+DL+QL      +      + +        E V+ ++G+ P++
Sbjct: 117 AKRYQSDEVFVSVLSGDRDLLQLSDTHIKIRIPKTSKGVTTVHDYLPEDVMNEYGVTPKE 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GD+ DN+PG+P IG KTA  ++QEY ++EN + +  ++K  +          
Sbjct: 177 FIDVKALMGDTSDNVPGVPSIGEKTATKIIQEYHSIENAIEHVDKLKPPRA--------- 227

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               S+ L     D                           +F+K++  + T    +   
Sbjct: 228 ----SKALAEHIEDA--------------------------KFSKMLVTIVTDAPIETEI 257

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            + VV ++ T E+     + E                             K FL+R + +
Sbjct: 258 SDMVVGNLYTKESLEWINKLEF----------------------------KSFLKRYENV 289

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI---ITDTMDAFHSKPIAIAISTLD 415
                       I   ++ +   + L+        +    T       S+  AI+I+  +
Sbjct: 290 ETTSNIEIETDIINTGENWESLYKILKKAREFGISVCLEETAIKSYHTSELYAISITLDN 349

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +          I  DL    +     +     +   Y+         LK   N K     
Sbjct: 350 KS--------YIIKDL---DNIAEILEQITALDAKKYILSLKPLLKLLKSMENAK----- 393

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
                     F DI + +Y+++  + S+ +  IA  ++     ++ E++   K +  + +
Sbjct: 394 ---------NFYDISVAAYLINPLKDSYFVEDIAGDYMGSACSSKSEMIGKAKLNE-VLR 443

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            +D +   +    S V +     +  KL    L  +Y+ ++ P+I  +++ME TG+++D+
Sbjct: 444 FNDEKAINYFAMESYVAVHSGENILKKLSELGLDDLYKNIEMPLIYSLAKMENTGVRVDE 503

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + LK+ +  + + +  LEE+I   +GE FN++SPKQLG+ILF KLK   G KTKTG   +
Sbjct: 504 ERLKKYANTLLEKIDKLEESIISKAGESFNINSPKQLGEILFGKLKLSGGKKTKTGY--S 561

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+ +    ++ II++ILE+RQL+K+ STYA  L  +I +   R+H  ++   T TGR
Sbjct: 562 TAADVLEKLALEHEIIRDILEYRQLTKLNSTYATGLAGYIREDG-RIHGTFNQTITATGR 620

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++S EPNLQNIP++T++G KIR  F+  P    + ADYSQIELR+LA ++    L + + 
Sbjct: 621 ISSTEPNLQNIPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRVLASLSGDEKLIESYH 680

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           ++ DIH   A+++F V +E+V+P++RR+AK +NF ++YGIS F L+  L I R EA DYI
Sbjct: 681 SAADIHAATASQVFHVPLEEVTPELRRNAKAVNFGVVYGISAFGLSEDLSISRKEALDYI 740

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  + G+ ++++K     ++ G+V+T+FGR     EI S     R+  +R A+N+PI
Sbjct: 741 NNYFKIYGGVKKFLDKQVADAKEKGFVKTMFGRIRPIPEIKSSNFMTRSFGDRVAMNSPI 800

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + +M+ V ++L++      ++LQIHDEL+ EV EEE    S+++  +M++A 
Sbjct: 801 QGSAADIMKISMLKVDEALKESGYDANIVLQIHDELLIEVKEEEAEKVSKLVEKTMKEA- 859

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
              ++L+VPL+V+  +   W E 
Sbjct: 860 ---VSLKVPLEVDAHIGKTWLEA 879


>gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
 gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
          Length = 883

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/985 (31%), Positives = 494/985 (50%), Gaps = 117/985 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +  L LVDGSS  +RAFY+   L+R    +GL  NA+  F  M   +L+        +H 
Sbjct: 2   KQKLLLVDGSSLAFRAFYSILDLNRFKNQNGLHTNALYSFHRMFKTILEQEN----PTHV 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V +D    TFR E+Y +YK  R K P     Q+P   +   A+GIP   +  +EADDII
Sbjct: 58  LVAWDAGKTTFRTEMYAEYKGGRAKTPSEFKEQMPYFNVLLDAWGIPHYRLNQYEADDII 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPE 177
            T  Y A KEGF V ++S DKDL+QL +P   +  T K      +     + +K+G+ PE
Sbjct: 118 GTLAYQASKEGFEVVVLSGDKDLIQLATPEITVKITTKGVSELVEYTPAFINEKYGLTPE 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++ L                          G+  +     +++ +K   + + EY 
Sbjct: 178 QIIDMKGLM-------------------------GDSSDNYPGVTKVGEKTAIKLLQEYG 212

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
               +                     +E+    +L   L   +    +++     D ++ 
Sbjct: 213 SVEGIYE------------------HVEEMKKSKLKDNLIQDKELAFLSKTLARIDINS- 253

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P+ + +  T  K  +IE  ID     K   F S           Q  Q+  ++ L  
Sbjct: 254 ---PLEITVADTLRKEESIEELIDF---YKEMSFQSFQKDLLNKKGGQVVQEESVDSLNV 307

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+                ++   T+   SF       +   +  +A+A  T  Q 
Sbjct: 308 QWIDTISGKE-------------LKDATTVHFESFD-----NNYHIAPVLAVAFGTEKQV 349

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             TS +                              K++  +E   K   + K  K+  +
Sbjct: 350 YVTSIESAVQ----------------------SEAFKQWLADETIEKTMFDTKAMKVFAN 387

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDK 532
           R+G+++ G   D+ L++Y++D+    ++I  +A+++    L    +   K  K  +P +K
Sbjct: 388 RFGLTVAGATYDVSLLAYLVDANEIVNEIYDVAKRFGISLLKTDEEVYGKGVKIKVPEEK 447

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                   H      V+      L  +L   +   +Y  ++ P+ D++++MEI GI++DQ
Sbjct: 448 ---EVFWNHLAAKIYVLATAPKRLLKQLDENEQAQLYWEMELPLSDILARMEIQGIRVDQ 504

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L ++  +  + L  +E+ IY+L+GE+FN++SPKQLG ILF K+  P   KTKTG   +
Sbjct: 505 NRLIEMGLQFEERLKEIEQTIYELAGEEFNINSPKQLGVILFEKMNLPVIKKTKTGY--S 562

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+ +     +PI++ ILE+RQL+K+ STY + L  +I+++ + +HT +    T TGR
Sbjct: 563 TAVDVLEKLASQSPIVECILEYRQLAKLNSTYVEGLQTYIDEKGK-IHTRFVQNLTQTGR 621

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S +PNLQNIPI+T+ G+++R AF+   P  KL+S+DYSQIELR+LAH+A    + + F
Sbjct: 622 LSSQDPNLQNIPIRTEEGRQVRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAF 681

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           +N++DIH   A  +FG+ N E+V+  MRR AK +NF I+YGIS + L+  L IPR +A +
Sbjct: 682 KNNIDIHTNTAMRVFGIQNPEEVTSSMRRQAKAVNFGIVYGISDYGLSQNLNIPRKKAKE 741

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RY   F G+ +Y+E      RQN YVET+F RR +  EI+S   +IR+  ER A+N+
Sbjct: 742 FIDRYLEEFQGVKDYMETIVAEARQNDYVETLFHRRRYLPEIHSSNFNIRSFAERTAMNS 801

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AMI + + L +     K+LLQ+HDEL+FEVPEEE+ +   ++   ME 
Sbjct: 802 PIQGTAADILKVAMIELDRELTERNFQAKLLLQVHDELIFEVPEEEVESLQSLVEEVMEN 861

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    ++L VPLK +  + NNW E 
Sbjct: 862 A----VSLSVPLKADSNIGNNWYEA 882


>gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99]
          Length = 885

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/977 (31%), Positives = 474/977 (48%), Gaps = 110/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 12  NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 66

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 67  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 126

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  AE +G  V II+ D+DL QL S  T +Y                  I  + +  ++ 
Sbjct: 127 TKKAEADGMEVAIITGDRDLTQLASEKTTVY------------------ITKKGIADMET 168

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T +++     +          L+   G+  + +     + +K                 
Sbjct: 169 NTPETLKEKYNLTPEQIIDMKGLM---GDSSDNIPGIPGVGEKTA--------------- 210

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                         L+ L         ++   + +   KL  +V    +    + E   +
Sbjct: 211 --------------LKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKELAILSKELATI 256

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           ++++     I    E  +    +T +   L  + +     +  +    E  ++L +    
Sbjct: 257 NVDSP----IECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEEAKELKELSF- 311

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                +IV     + +       G  +  +  +  +   S  I                 
Sbjct: 312 -----EIVTELKEKHF------GGKTALYVELENDNYHTSNFIG---------------- 344

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L+VH+SQ +      T E     +++ E+E   K+ ++ K   + ++R G+++ 
Sbjct: 345 ------LTVHSSQGTYFFTKETAENSEAFREWVESEQ-TKVVYDAKKTMVAMNRIGLAIS 397

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQ 539
           G   DIML SY+L+   S  D  S+A +      +       K  K S P + I    V 
Sbjct: 398 GITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAVYGKGAKRSTPEESI----VA 453

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  I  L   L   L   + L + E L+ P+  V+++ME+ G+ +D + L+ + 
Sbjct: 454 SHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMK 513

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E++  L +LEE+I+ L+GE FN++SPKQLG ILF KL  P+  KTKTG   +TA D+ +
Sbjct: 514 VELAGRLKTLEESIHSLAGEAFNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADVLE 571

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PN
Sbjct: 572 SLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPN 631

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH
Sbjct: 632 LQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIH 691

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  
Sbjct: 692 TKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVS 751

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAAD
Sbjct: 752 YPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAAD 811

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L
Sbjct: 812 IIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VEL 867

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+    + W + 
Sbjct: 868 SVPLKVDSAFGDTWYDA 884


>gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150]
 gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150]
          Length = 879

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/991 (31%), Positives = 487/991 (49%), Gaps = 129/991 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DGSS  +RAF+A        R ++GL  NAI GF  ML  LL+  +    
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFALYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K PE    Q P +R    A GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQFPYIREMLAARGIAYYDLAQYEA 116

Query: 118 DDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE   E + VTI+S DKDL+QL    T +  + K     E    E++++K
Sbjct: 117 DDIIGTLAKMAENTSEDYQVTIVSGDKDLIQLTDVNTVVEISKKGVAEFEAFTPEYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE                
Sbjct: 177 MGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEG--------------- 221

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            I ++ +  + S+                  + E+    +  +FL         ++   T
Sbjct: 222 -IYDHIDEMKKSK------------------MKENLINDKDQAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D  +    P+ + ++ T   G  +E        +   QF +       +  E  PQ   
Sbjct: 254 IDTQS----PIEIGLDDTAFTGPDLEKLAAFYDEMGFVQFKN------ALGGEAVPQDFD 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                              +   +  Q    +        F+I+    D +H++PI I  
Sbjct: 304 -------------------VAYEEPSQVTADRFSPDDFFYFEIL---GDNYHTEPI-IGF 340

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  + K         I+        +    +  L+K +                 ++ K 
Sbjct: 341 AWGNDK--------QIYASTDTDLLKSDAFQTALSKAV---------------NIYDFKR 377

Query: 472 DKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL--KSRKS 526
            K++L   GI +     D  L  Y+L S    +++++IA+ +  L     E++  K  K 
Sbjct: 378 SKVLLSHLGIDLPTANFDARLAKYLL-STVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P  ++    +  H  +   V+     ++  KL       +   ++ P+ +V+++MEI 
Sbjct: 437 AVPEKEV----LLSHLAKKVKVLQVAKPVMLEKLAEHSQSELLFDMELPLANVLAKMEIA 492

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++    L +++ E    +  L + IY+++GE+FN++SPKQLG ILF K++ P     K
Sbjct: 493 GIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEFNINSPKQLGVILFEKMELPLEYTKK 552

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ++K++STY   L ++I +  + +HT Y   
Sbjct: 553 TKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGK-IHTRYVQD 611

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+   
Sbjct: 612 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDE 671

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L I 
Sbjct: 672 HLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGISDFGLSNNLGIS 731

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A +YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++RN  E
Sbjct: 732 RKKAKEYINTYFERYPGIKAYMENVVREAKDKGYVETLFHRRRELPDINSRNFNVRNFAE 791

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE+V EVP +E+     ++
Sbjct: 792 RTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMKALV 851

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    + L VPL  +      W E 
Sbjct: 852 KETMEAA----VELAVPLIADENDGRTWYEA 878


>gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 893

 Score =  702 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/990 (31%), Positives = 488/990 (49%), Gaps = 113/990 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAFYA    L R   H+GL  NA+  F N L K++     +  
Sbjct: 1   MTNK-KLLLVDGNSLAFRAFYAMYNQLDRMISHEGLHTNALVAFNNFLDKIVDPMAPDL- 58

Query: 58  ASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                V +D      T R +++P+YK  R K+PE    Q P +R      G+   E  G 
Sbjct: 59  ---ALVAWDAGSGKETHRGKLFPEYKDGRSKVPEEFKEQFPYLREMVMLHGLRNYEQAGL 115

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADDII TY+ + E  G++V I++ D+DL QL +    +  T K     E     ++ +K
Sbjct: 116 EADDIIGTYSRMGEAAGYSVIIVTGDQDLTQLATENVTVNVTKKGVTDIESYTPAYIKEK 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +G+ P +++  +ALTGD+ DN PG+  +G KTA  LL EY N++                
Sbjct: 176 FGLTPAQIIDKKALTGDTSDNYPGVTKVGEKTALKLLAEYNNID---------------- 219

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N+ +  +  + S+                           LI+  + L F     R   T
Sbjct: 220 NLYDNIDKLKQSKM-----------------------KDNLIND-RELAFQA---RELAT 252

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
              DA    P    +   E +G+  E  I     +   Q   L+   +   S Q      
Sbjct: 253 ILTDANLPLP----LEEMEYRGVDFEKIIPFYENLDFKQ--HLAKIKALRKSGQLENTKE 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            +      +   NN                         S  I     +    + I  AI
Sbjct: 307 FDNGINFVELKENN--------------LRAIAMLGDKISVHIEFVGDNYHEGEMIGFAI 352

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +     S  +  +                         LK   ENE  LK   N+K 
Sbjct: 353 GNPEVGYYASRDISLLQT---------------------EELKSVIENEQILKNVFNVKA 391

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK---WLSYTRKEILKSRKSS 527
             ++  R G++++G   D +L++Y+LD+  + + ++++AQ+   +L+       K  K +
Sbjct: 392 QLVLFKRLGLALKGVNFDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGAKFT 451

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P D    + +  H    ++ + +L      +L   +  H+Y  ++ P+  V++ ME  G
Sbjct: 452 VPTD---TNLLLSHVAHKADGLFKLEKPAFTELKQHEQTHLYTDIELPLAFVLADMEYQG 508

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I+++ + L+    ++S+ +  ++  IY  +GE+FNL+SPKQLG +LF K+  P   KTKT
Sbjct: 509 IKVNPEYLRNKGKDLSERIADIQSAIYIEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKT 568

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+ +IL++RQL+K+KSTY D L + I  +  ++HT +    
Sbjct: 569 GY--STAVDVLEKLAPQAPIVDHILQYRQLAKLKSTYIDGLLSVIYPKDSKIHTRFLQTL 626

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++++ G+ IR AF+   P  ++  ADYSQIELR+LAH+     
Sbjct: 627 TQTGRLSSVDPNLQNIPMRSEEGRLIRTAFVPSHPNWQIFGADYSQIELRVLAHVTGDKN 686

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKV-SPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           + + F N  DIH   A  +FG+  + V  P  RR AK +NF I+YGIS + LA  L I R
Sbjct: 687 MQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNFGIVYGISDYGLANNLGISR 746

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +EA  +I  YF  FP IHE++   K F  ++GYVETI  RR +  +I +   ++R+  ER
Sbjct: 747 AEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHRRRYLPDIQAKNFNLRSFAER 806

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AMI V+++L ++ L  +MLLQ+HDEL+FE P +EI   ++++ 
Sbjct: 807 TAMNSPIQGSAADIIKIAMIKVNEALRENNLQARMLLQVHDELIFETPVDEIDELTEVVT 866

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           + M+ A    + L VPLKV+    + W + 
Sbjct: 867 NVMDSA----VALDVPLKVDAHHGDTWYDA 892


>gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 887

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/980 (28%), Positives = 448/980 (45%), Gaps = 111/980 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           E  L L+DG S  +RAFYA P  +     G   NA+ GF +M   +L +       +H A
Sbjct: 9   EKTLLLIDGHSMAFRAFYALPAENFSTTGGQHTNAVYGFLSMFVNILTSEE----PTHLA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE++P+YKA R   PE    Q+ +++    A G+  +E  G+EADD+IA
Sbjct: 65  VAFDVARETFRNELFPEYKAQRAPTPEEFKGQVEILKDILHAMGVTTVEKPGYEADDVIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    A K+G    I++ D+D  QLV+    +    +      ++    V KK+ + P +
Sbjct: 125 TLATAATKQGMKTLIVTGDRDSFQLVNDDVTVLYPTRGVSTLNRMTPAAVEKKYDLTPTQ 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+P IPG+G KTA   +++Y  L+N+L +   IK K           
Sbjct: 185 YPDFAALRGDPSDNLPKIPGVGEKTATKWIKKYETLDNLLAHVDEIKGKV---------- 234

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                                         G  L   +  +   + +  +      + + 
Sbjct: 235 ------------------------------GDALRERVDQVAMNRKLTEMVKDLPLEVSP 264

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           ++    D + TE      E +   +   +  Q         +            E L + 
Sbjct: 265 LQLERGDADVTEISNRFDELQFGVNLRERVLQALGEDSPEPEATVNAPEVTEASEALPEW 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +      +             E   + +  + TD           +  S L+ K+
Sbjct: 325 LTRNRDAGIAMAVDGDPKPG------EGDCTFAVLVATDYTSQ------TVDFSALEGKE 372

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +F       D                                 K  H  K     L  
Sbjct: 373 RDAFAEWVSSDD--------------------------------PKFLHFAKRTYHKLIS 400

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G ++ G   D  +  Y+L  G+ +++IA + Q+ L     +             + D  
Sbjct: 401 RGFTLGGIAHDTAIAGYLLRPGQRTYEIADVYQRHLQKQLPQSDGQL-------SLLDDS 453

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E  +  +  +L+L   L  +L   + L +Y  L+ P+I +++ ME TGI +D   L++
Sbjct: 454 PSEPLLIEAMAVLELVPRLTDELSDIESLELYTDLEIPLITILAAMEDTGIAVDTHTLEE 513

Query: 598 VSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
                   +   EE   DL+G+   NLSSPKQL  +LF     P   KTKTG      + 
Sbjct: 514 QLDGFVDLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEI 573

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  D+P ++++L  R+ SK+KST  + L   +     R+HT +      TGRL+S 
Sbjct: 574 EALAKKTDHPFLQHLLAHREYSKMKSTL-EGLIRSVGGDG-RIHTTFKQTVASTGRLSST 631

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++TD G+KIR AF+     + L++ADYSQIE+R++AH+++   L Q +++  
Sbjct: 632 DPNLQNIPVRTDAGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGE 691

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  V +++F V I++V+P++RR  K +++ + YG+S + LA QL IP+ EA   +  Y
Sbjct: 692 DLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSYGLAAQLDIPQGEAKSIMDSY 751

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+  Y+    +  R++GY  T+FGRR +  E+ S     R   ERAA+NAPIQG+
Sbjct: 752 FERFGGVKNYLRSVVDEARKDGYTSTLFGRRRYLPELTSTNRIARENAERAALNAPIQGT 811

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V++ L+   L +++LLQ+HDELV EV   E+   S+I+   M+ A    
Sbjct: 812 AADIIKVAMVRVNRRLDS--LKSRVLLQVHDELVLEVAPGELEEVSRIVSEEMDGA---- 865

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           I+LRVPL+V+     NW E 
Sbjct: 866 ISLRVPLEVSTGHGTNWDEA 885


>gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334]
          Length = 881

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/989 (30%), Positives = 480/989 (48%), Gaps = 123/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L LVDG+S  +RAF+A           DGL  NAI  F NML  +L+  + ++ 
Sbjct: 1   MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDA- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 60  ---ALVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A++ G+  TI++ D+DL QL +  T +  TVK     E     HV +K G
Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+                          ++ +K   + +
Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVT-------------------------KVGEKTALKLL 211

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            +Y     L                     ++D    +L   L   +    +++   T D
Sbjct: 212 NQYGSMENLY------------------ANVDDMKKSKLKENLINDKDNAFLSKQLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            D     P+ +D+                D T        L D  +K+N     +K+   
Sbjct: 254 RDV----PLTVDLA---------------DVTYAGPDLDKLRDFYTKMNMNSLLKKIGGS 294

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             + +     +      +++    Q  +   +     +F+I     +   ++ I   I T
Sbjct: 295 VAKPVQAVHFS------VLDE---QSILALTKLTEPLTFEIEMLEDNYHVAEQIGFFIGT 345

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            ++   +                        +T   L  +K++ E+        + K + 
Sbjct: 346 KEETYVS----------------------TDVTLLTLPAVKRWLEDAKRDLTVFDGKRNI 383

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           +  +R G+ +     D++L SY+++   +S+D+  IA+      L        K  K  +
Sbjct: 384 VAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQV 443

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D     Q        S+ +  L   L   L  ++   ++  ++ P+  V+++MEI GI
Sbjct: 444 PEDDKLFGQF----ARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   LK +  E S+++  LEE IY  +G KFNL+SPKQLG+ILF KL  P   KTKTG
Sbjct: 500 TLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+       +PI+++IL++R  +K+ STY   L         ++HT Y    T
Sbjct: 560 Y--STSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPD-HKIHTRYLQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PN+QNIP + + G+ IR+AF+      ++ S+DYSQIELR+L+HI+    +
Sbjct: 617 QTGRLSSVDPNMQNIPARDE-GKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENM 675

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F++ +DIH   A +IFG++  ++V+P MRR AK  NF I+YGIS + L+  + I R 
Sbjct: 676 QEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRK 735

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF ++P +H+Y++      R++GYVET+F RR +  +I+S   ++R   ER 
Sbjct: 736 QAKAFIDGYFDQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERT 795

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDEL+FE PEEEI   S+++  
Sbjct: 796 AMNTPIQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPK 855

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    ++L VPLKV       W + 
Sbjct: 856 VMDSA----VHLDVPLKVESHYGPTWFDA 880


>gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
          Length = 878

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/989 (29%), Positives = 487/989 (49%), Gaps = 126/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  E  + L+DG S + RAFY  P L+   +G    A+ GF N+L+++L+  + +    +
Sbjct: 1   MMSE-KILLIDGHSILNRAFYGLPDLTN-SEGKHTGAVYGFLNILFRILEEEKPQ----Y 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD  A TFR+++Y  YK  R  +PE L  Q+PL++   +A  IP + ++G+EADD+
Sbjct: 55  LAVAFDLHAPTFRHQMYEAYKGTRKAMPEELREQVPLMKEVLEAMEIPIVSLEGYEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGI 174
           + T    +E+ G  VTI+S D+DL+QL +    +            E    + VI+K+ +
Sbjct: 115 LGTLGRRSEQRGMEVTILSGDRDLLQLATDHVLIRIPKTTKGQTVIENYHTQEVIEKYQL 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+++ L+AL GDS DNIPGIPG                         + +K   + +L
Sbjct: 175 RPEQIIDLKALMGDSSDNIPGIPG-------------------------VGEKTATKILL 209

Query: 235 --EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E  E A                       +E+    +    L+       +++   T 
Sbjct: 210 AYENVENAY--------------------AHVEEIKPNKAKESLRDHYDLAQMSKALATI 249

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             D+    PV  D +       A   E+      +  Q     +   +   E  PQ+  L
Sbjct: 250 HTDS----PVSFDYDQ------AKLGELYTQRAYEMFQRLEFKNLLQRFACE--PQENAL 297

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E+     +            + +  +   +K +       +I  +         + +AI+
Sbjct: 298 EKNFFFCE------------DLQGAETIFEKAKAQEVVGVQIFAE-----EGDLLGVAIA 340

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
              ++          ++++S   S +                         K      + 
Sbjct: 341 VSREE--------IYYVEVSGFVSGEYLADKL---------------AQVAKQTQIAAFH 377

Query: 473 KLVLHRYGISMRGFEDI---MLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKS 526
             VL +Y +++  +       + +Y+L+  ++++D   I +++L      R+E++  +  
Sbjct: 378 VKVLLKY-VNVETWTQTFGAEVAAYLLNPLKTAYDYEDIGKEYLGQIFPGRQEVVGKKGD 436

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
              + +    +++      + V L +   L   L    +  +++ ++ P++  ++ ME  
Sbjct: 437 KDALAEKP-EEMKRLGCFMAYVALAVKAPLEEALREAGMERIFQEIEMPLVFTLNSMEKE 495

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GIQ++ + L+    ++   +  LE+ I   +GE FN++SPKQLG ILF K+K P G KTK
Sbjct: 496 GIQVEGEALRVYGEQLQVRIGELEKQICGQAGEDFNINSPKQLGAILFEKMKLPGGKKTK 555

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   +TA D+       +PI+++ILE+RQL+K+KSTYAD L  +I +   R+H+ +   
Sbjct: 556 TGY--STAADVLDKLAPKHPIVRDILEYRQLTKLKSTYADGLAGYIGEDG-RIHSTFHQT 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGR++S EPNLQNIPI+ +LG+ IR+ F+       + ADYSQIELR+LAH++    
Sbjct: 613 ITATGRISSTEPNLQNIPIRMELGRLIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEK 672

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L Q +  + DIHR+ A+++F    E+V+   RR+AK +NF I+YGIS F L+  L I R 
Sbjct: 673 LIQAYREAQDIHRLTASQVFHTPFEEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRK 732

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EAADYI+RYF  +P I  +++      +++GYV T+FGRR    E+ S     R+  ER 
Sbjct: 733 EAADYIERYFSTYPKIKGFLDGLVKKGKEDGYVTTMFGRRRPIPELKSSNFMQRSFGERI 792

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N+PIQG+AADI + AM  V+  L    L +K++LQ+HDEL+ E  EEE+   S+I++ 
Sbjct: 793 AMNSPIQGTAADIIKIAMNRVYSRLRQEGLRSKLILQVHDELLIETWEEELEQVSEILLE 852

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M +A     +L V L+V++    NW E 
Sbjct: 853 EMRQAA----SLDVALEVDMHTGKNWYEA 877


>gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066]
 gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066]
          Length = 879

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/993 (31%), Positives = 489/993 (49%), Gaps = 133/993 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DGSS  +RAF+A        R ++GL  NAI GF  ML  LL+  +    
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFALYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K PE    QLP +R    A GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLAARGIAYYDLAQYEA 116

Query: 118 DDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE   E F +T++S DKDL+QL    T +  + K     E    +++++K
Sbjct: 117 DDIIGTLAKMAENTSEAFQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + V L+AL GD  DNIPG+  IG KT   LL E+G+LE                
Sbjct: 177 MGITPAQFVDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEG--------------- 221

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            I ++ +  + S+                  + E+    +  +FL         ++   T
Sbjct: 222 -IYDHIDEMKKSK------------------MKENLINDKEQAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D  +    P+ + ++ T  KG  +E  +     +    F +       +  E  PQ   
Sbjct: 254 IDTQS----PIEIGLDDTAFKGPNLEKLLAFYDEMGFVHFKN------ALRGEAVPQDFD 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           +  ++                             +     F+I+    D +H++PI I  
Sbjct: 304 VAYVEPSQVTA-------------------DHFSSEDFFYFEIL---GDNYHTEPI-IGF 340

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG--HNI 469
           +  ++K   +                 ST  + L  E               K    ++ 
Sbjct: 341 AWGNEKQIYA-----------------STDTDLLKSEAFQA--------ALSKAVNIYDF 375

Query: 470 KYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL--KSR 524
           K  K++L   GI +     D  L  Y+L S    +++++IA+ +  L     E++  K  
Sbjct: 376 KRSKVLLSHLGIDLPTANFDARLAKYLL-STVEDNELSTIARLYTDLPLETDEVVYGKGA 434

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K +IP  ++    +  H  +   V+     ++  KL       +   ++ P+ +V+++ME
Sbjct: 435 KRAIPEKEV----LLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKME 490

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           + GI++D   L +++ E    +  L ++IY+++GE+FN++SPKQLG ILF K+  P    
Sbjct: 491 MAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEFNINSPKQLGVILFEKMGLPLEYT 550

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++I +  + +HT Y 
Sbjct: 551 KKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGK-IHTRYM 609

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAK 763
              T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+ 
Sbjct: 610 QDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPSTKDAVLLSSDYSQIELRVLAHISG 669

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
              L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L 
Sbjct: 670 DEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGISDFGLSNNLG 729

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R +A +YI  YF R+PGI  Y++      +  GYV T+F RR    +INS   ++RN 
Sbjct: 730 ISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFHRRRELPDINSRNFNVRNF 789

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE++ EVP +E+     
Sbjct: 790 AERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKA 849

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ++  +ME A    + L VPL  +      W E 
Sbjct: 850 LVKETMEAA----VELAVPLIADENEGCTWYEA 878


>gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
 gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
          Length = 875

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/989 (28%), Positives = 473/989 (47%), Gaps = 133/989 (13%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + L+DG S + RAF+  P L+   +GL  NAI GF  +++K+L   + +    + 
Sbjct: 4   NTNKKIVLIDGHSILNRAFFGLPDLTN-SEGLHTNAIYGFLTIMFKILDEEKPD----YL 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD  A TFR+++Y  YK  R  + + L  Q+P+++    + GI  IE  G EADD++
Sbjct: 59  TVAFDVHAPTFRHKMYDAYKGTRKPMADELRQQVPVIKEVLCSMGIKTIECAGLEADDLL 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIP 175
            T +   E+EG  V++IS D+DL+QL +    +     +      E      V +++ + 
Sbjct: 119 GTLSRRCEEEGMEVSVISGDRDLLQLATQHVKIRIPKTKQGRTEVEDYYAADVKERYQVT 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++ + L+AL GD+ DNI   PG+                        I +K   + I E
Sbjct: 179 PKEFIDLKALMGDTADNI---PGV----------------------PSIGEKTATKIITE 213

Query: 236 Y--AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           Y   E A                       + +   PR    L       ++++   T +
Sbjct: 214 YHSIENAYE--------------------HVSELKPPRASKALAEHWNMAVMSKTLATIE 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
             A            +E K   I TE +     +  QF +L                 L 
Sbjct: 254 VHA------DFPYELSEAKLGNIFTE-EAYAFFQKLQFKNL-----------------LS 289

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF-----HSKPIA 408
           +    +      D + +I + K  ++ + + +        I  +T +        +    
Sbjct: 290 KFDVTAPANQVEDGFEQITDYKKAEKVLDQAKESTCVGAVIFQNTENVLPLFANEAAIGG 349

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           I +   ++                 H       +    + +L  L K  E+     +  +
Sbjct: 350 IGLCFDEE-----------------HAYCIEVTEQITKEFLLEKLSKLNES-CGRFVMFD 391

Query: 469 IKYDKLVL--HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           IK     L         +   D  + +Y+L+  ++ +    +A++ L+   +E       
Sbjct: 392 IKEAMKWLPIKNQ----KHCFDATVAAYLLNPLKNDYTYEDVAREQLNIVIEE------- 440

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                    S+        +    +   LL  KL   ++LH++E ++ P++  +  ME  
Sbjct: 441 --------KSEAYVKVCYEAYTAFKGSDLLYKKLEETQMLHLFEDIEMPLVFTLYDMERN 492

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+ + + LK  S+++   +  LE+ IY+++GE FN++SPKQLG ILF KL  P   KTK
Sbjct: 493 GIRAEGEALKVYSSQLGGRISELEKEIYEMAGESFNINSPKQLGVILFEKLLLPGSKKTK 552

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +G   +TA  +      D PI+  +LE+RQL+K+KSTYAD L N+I +   R+H+ ++  
Sbjct: 553 SGY--STAASVLDKLAPDYPIVSKVLEYRQLTKLKSTYADGLVNYIEEDG-RIHSKFNQT 609

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGR++S EPNLQNIP++ +LG+ IR+ F+       + ADYSQIELR+LAH +    
Sbjct: 610 ITATGRISSTEPNLQNIPVRVELGRLIRKVFVPEDGYIFVDADYSQIELRVLAHCSGDAN 669

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + +    DIHR+ A+++F +  E+V+P  RR+AK +NF I+YGIS F L+  L I R 
Sbjct: 670 LIEAYREEKDIHRITASQVFHIPFEEVTPLQRRNAKAVNFGIVYGISSFGLSEDLSIGRK 729

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EAA YI+ YF  +PGI  +++ T    ++ GYV T+FGRR    E++S     R+  ER 
Sbjct: 730 EAAKYIEDYFKTYPGIKTFLDDTVAHAKEMGYVVTLFGRRRPVPELSSSNFMQRSFGERV 789

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+NAPIQG+AADI + AMI V++ L++  L ++++LQ+HDEL+ E    E+    +I+  
Sbjct: 790 AMNAPIQGTAADIMKIAMIGVNRRLKEQNLKSRLVLQVHDELLIEAYRPELPEVEKILRE 849

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            ME+A     +L VPL++++    NW E 
Sbjct: 850 EMEQAA----SLDVPLEIDMHTGENWYEA 874


>gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03]
          Length = 879

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/993 (31%), Positives = 489/993 (49%), Gaps = 133/993 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DGSS  +RAF+A        R ++GL  NAI GF  ML  LL+  +    
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFALYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K PE    QLP +R    A GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLAARGIAYYDLAQYEA 116

Query: 118 DDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE   E F +T++S DKDL+QL    T +  + K     E    +++++K
Sbjct: 117 DDIIGTLAKMAENTSEAFQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + V L+AL GD  DNIPG+  IG KT   LL E+G+LE                
Sbjct: 177 MGITPAQFVDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEG--------------- 221

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            I ++ +  + S+                  + E+    +  +FL         ++   T
Sbjct: 222 -IYDHIDEMKKSK------------------MKENLINDKEQAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D  +    P+ + ++ T  KG  +E  +     +    F +       +  E  PQ   
Sbjct: 254 IDTQS----PIEIGLDDTAFKGPNLEKLLAFYDEMGFVHFKN------ALRGEAVPQDFD 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           +  ++                             +     F+I+    D +H++PI I  
Sbjct: 304 VAYVEPSQVTA-------------------DHFSSEDFFYFEIL---GDNYHTEPI-IGF 340

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG--HNI 469
           +  ++K   +                 ST  + L  E               K    ++ 
Sbjct: 341 AWGNEKQIYA-----------------STDTDLLKSEAFQA--------ALSKAVNIYDF 375

Query: 470 KYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL--KSR 524
           K  K++L   GI +     D  L  Y+L S    +++++IA+ +  L     E++  K  
Sbjct: 376 KRSKVLLSHLGIDLPTANFDARLAKYLL-STVEDNELSTIARLYTDLPLETDEVVYGKGA 434

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K +IP  ++    +  H  +   V+     ++  KL       +   ++ P+ +V+++ME
Sbjct: 435 KRAIPEKEV----LLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKME 490

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           + GI++D   L +++ E    +  L ++IY+++GE+FN++SPKQLG ILF K+  P    
Sbjct: 491 MAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEFNINSPKQLGVILFEKMGLPLEYT 550

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++I +  + +HT Y 
Sbjct: 551 KKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGK-IHTRYM 609

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAK 763
              T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+ 
Sbjct: 610 QDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPSTKDAVLLSSDYSQIELRVLAHISG 669

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
              L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L 
Sbjct: 670 DEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGISDFGLSNNLG 729

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R +A +YI  YF R+PGI  Y++      +  GYV T+F RR    +INS   ++RN 
Sbjct: 730 ISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRNF 789

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE+V EVP +E+     
Sbjct: 790 AERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPSDELLAMKA 849

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ++  +ME A    + L VPL  +      W E 
Sbjct: 850 LVKETMESA----VELAVPLIADENEGCTWYEA 878


>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
 gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
          Length = 886

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/981 (30%), Positives = 490/981 (49%), Gaps = 114/981 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              + ++DG S + RAFY  P L+  ++GL  NA+ GF N+++K++   +     ++  V
Sbjct: 10  NKKILIIDGHSILNRAFYGLPDLTN-YEGLHTNAVLGFLNIIFKIIDEEQ----PTNMCV 64

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+ +Y +YK  R  +P+ L  Q+PL++    A  I  IE  G+EADDII T
Sbjct: 65  AFDVKQPTFRHLMYKEYKGTRKPMPDELREQVPLIKEVLTAMNITIIEKGGYEADDIIGT 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
            + IA+K+G+ V I+S D+DL+QL +    +     +      E      V K +G+ P 
Sbjct: 125 LSRIADKDGYKVVIVSGDRDLLQLATDNILVRIPKTKAGGTTVENYYAADVQKLYGVTPV 184

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++ L GD+ DNIPG+PG                         I +K   + I E+ 
Sbjct: 185 QFIDMKGLMGDTSDNIPGVPG-------------------------IGEKTAGKIIQEWK 219

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                            I   LEH+   +   P+    L+       ++R   T   D  
Sbjct: 220 S----------------IDNALEHID--EIKPPKAQKNLREFADQAKMSRELATIKLD-- 259

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                VLD N  +        ++  D +    +         + +++   Q+L  E    
Sbjct: 260 ----CVLDFNLDDTDLF----DMFNDKSYNIMKRLEFKSMLKRFDAKPDAQELKPEITVI 311

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++    T I                G A   +I+D+   +      IAI+   + 
Sbjct: 312 NENSALDTVRDTVI--------------AAGKAGMYVISDSDILY-----GIAITCDART 352

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 +  +  D      +D   K + T   +  +K    +  F +       D  VL 
Sbjct: 353 VYVINSMSGVSSDAMSDIVRDI--KTSGTSICIGDIKSCLNDMDFSEC------DTNVL- 403

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
                     D+ + +Y+L+   +S++   I++++L       KE+    + +     IS
Sbjct: 404 ----------DVGIAAYLLNPLENSYNYDDISKEYLEVMLPSEKELTGKEELN-AFTFIS 452

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D+ ++  A   + V L     L  KL    +  +Y  ++ P +  +  ME  G+++D+  
Sbjct: 453 DNFLELFA-YKALVPLLAMDTLIEKLKGTGMYDLYMNVELPTVYTLHDMEKRGVRVDRTA 511

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L++ S ++   +  L ++I + +G+ FN++SPKQLG +LF  +  P G KTKTG   +T+
Sbjct: 512 LEEYSHKLESRIKELHDSIIEYAGKDFNINSPKQLGPVLFEDMALPGGKKTKTGY--STS 569

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     +PII +ILE+RQLSK+ STYA  L + I+    R+H  ++   T TGR++
Sbjct: 570 ADVLEKIKNVHPIINDILEYRQLSKLNSTYAIGLGSFISSDG-RIHGTFNQTITATGRIS 628

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++ +LG+ IR+AFI       + ADYSQ+ELR+LAH++  + +   F+N+
Sbjct: 629 STDPNLQNIPMRMELGRLIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNN 688

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A+E+FGV I++V+P  RRHAK +NF I+YGIS F L+  L I R EA+D+I++
Sbjct: 689 IDIHSTTASEVFGVPIDEVTPLQRRHAKAVNFGIVYGISAFGLSEDLGISRKEASDFIEK 748

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y+  +  I  Y++    F ++NGYV+T+FGR     E+ S     R+  ER A+N+PIQG
Sbjct: 749 YYDTYKSIKTYLDGQVKFAKENGYVKTMFGRIRPIPELKSSNFMQRSFGERVAMNSPIQG 808

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+ V+  L++  L ++++LQIHDEL+ E  ++E+ T  +I+V  M  A   
Sbjct: 809 SAADIIKIAMLHVNIKLKELGLKSRLILQIHDELLIETAKDEVDTVRKILVDEMMHAA-- 866

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
             ++ VPL+V +   NNW E 
Sbjct: 867 --DMTVPLEVGVASGNNWYEA 885


>gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 887

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/980 (28%), Positives = 447/980 (45%), Gaps = 111/980 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           E  L L+DG S  +RAFYA P  +     G   NA+ GF +M   +L +       +H A
Sbjct: 9   EKTLLLIDGHSMAFRAFYALPAENFSTTGGQHTNAVYGFLSMFVNILTSEE----PTHLA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE++P+YKA R   PE    Q+ +++    A G+  +E  G+EADD+IA
Sbjct: 65  VAFDVARETFRNELFPEYKAQRAPTPEEFKGQVEILKDILHAMGVTTVEKPGYEADDVIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    A K+G    I++ D+D  QLV+    +    +      ++    V KK+ + P +
Sbjct: 125 TLATAATKQGMKTLIVTGDRDSFQLVNDDVTVLYPTRGVSTLNRMTPAAVEKKYDLTPTQ 184

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+P IPG+G KTA   +++Y  L N+L +   IK K           
Sbjct: 185 YPDFAALRGDPSDNLPKIPGVGEKTATKWIKKYETLGNLLAHVDEIKGKV---------- 234

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                                         G  L   +  +   + +  +      + + 
Sbjct: 235 ------------------------------GDALRERVDQVAMNRKLTEMVKDLPLEVSP 264

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           ++    D + TE      E +   +   +  Q         +            E L + 
Sbjct: 265 LQLERGDADVTEISNRFDELQFGVNLRERVLQALGEDSPEPEATVNAPEVTEASEALPEW 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                +      +       Q         + +  + TD           +  S L+ K+
Sbjct: 325 LTRNRDAGIAMAVDGDPKPSQ------GDCTFAVLVATDYTSQ------TVDFSALEGKE 372

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +F       D                                 K  H  K     L  
Sbjct: 373 RDAFAEWVSSDD--------------------------------PKFLHFAKRTYHKLIS 400

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G ++ G   D  +  Y+L  G+ +++IA + Q+ L     +             + D  
Sbjct: 401 RGFTLGGIAHDTAIAGYLLRPGQRTYEIADVYQRHLQKQLPQSDGQL-------SLLDDS 453

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E  +  +  +L+L   L  +L   + L +Y  L+ P+I +++ ME TGI +D   L++
Sbjct: 454 PSEPLLIEAMAVLELVPRLTDELSDIESLELYTDLEIPLITILAAMEDTGIAVDTHTLEE 513

Query: 598 VSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
                   +   EE   DL+G+   NLSSPKQL  +LF     P   KTKTG      + 
Sbjct: 514 QLDGFVDLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEI 573

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  D+P ++++L  R+ SK+KST  + L   +     R+HT +      TGRL+S 
Sbjct: 574 EALAKKTDHPFLQHLLAHREYSKMKSTL-EGLIRSVGGDG-RIHTTFKQTVASTGRLSST 631

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++TD G+KIR AF+     + L++ADYSQIE+R++AH+++   L Q +++  
Sbjct: 632 DPNLQNIPVRTDAGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGE 691

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  V +++F V I++V+P++RR  K +++ + YG+S + LA QL IP+ EA   +  Y
Sbjct: 692 DLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSYGLAAQLDIPQGEAKSIMDSY 751

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+  Y+    +  R++GY  T+FGRR +  E+ S     R   ERAA+NAPIQG+
Sbjct: 752 FERFGGVKNYLRSVVDEARKDGYTSTLFGRRRYLPELTSTNRIARENAERAALNAPIQGT 811

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V++ L+   L +++LLQ+HDELV EV   E+   S+I+   M+ A    
Sbjct: 812 AADIIKVAMVRVNRRLDS--LKSRVLLQVHDELVLEVAPGELEEVSRIVSEEMDGA---- 865

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           I+LRVPL+V+     NW E 
Sbjct: 866 ISLRVPLEVSTGHGTNWDEA 885


>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 852

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/932 (31%), Positives = 483/932 (51%), Gaps = 83/932 (8%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           ++  S K+   +H A+ FD  +   R +I P+YKA+R   PE L+PQ  L+R   +A  +
Sbjct: 1   MVLKSLKDLEPTHIALAFDKDSRAERQKIDPNYKAHREGPPEDLVPQFALIRKVVEALNL 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P +E+ G+EADD+I T    A+ EGF V +++ DKD +Q+V     L+D +K+       
Sbjct: 61  PVLEVPGWEADDVIGTLAARAKAEGFCVQVVTGDKDFIQIVDEDVRLFDPMKDVHTGPAE 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V ++ GI P +M    +L GD++DN+P +PGIG KTAA LLQ++G+++ +L     +K+ 
Sbjct: 121 VKERLGIEPRQMRDYLSLIGDAVDNVPKVPGIGDKTAAALLQQFGDVDTMLARLDEVKKP 180

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           K RE I  + E+   +R+LV   T + + + +                       +LI R
Sbjct: 181 KIREAISSHRESLLRARQLVTFNTQLDLKVTI----------------------PELIRR 218

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
                             I+    + +  E E  R      +  S+       + +    
Sbjct: 219 -----------------PIDNARARQLFTELEFFRLVNELPADTSTPKPTEPAVPAAPV- 260

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                                  I + ++++   +     GS  F +       F +  +
Sbjct: 261 ---------------------QVITSEEELKVLTEAAREAGSL-FLVPAYAGPPFATPLV 298

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            + I+  D +        T ++ L                 ++  L     +    K GH
Sbjct: 299 GLGIALPDGR--------TAYVPLRHDVLGSVQVPEARFAHVMGGL---LADPAVKKGGH 347

Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI--LKSR 524
           ++K   L+L    ++++G  +D+ L+SY+L+  R  H +  ++++ L      +      
Sbjct: 348 DLKVLSLLLGGMKLTLQGAHDDVELLSYLLNPSRREHALPDLSRERLGLELPALPATAEG 407

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K   P+ + S  +V       ++   +L   L  +L    L  +   ++ P++ ++++ME
Sbjct: 408 KKGRPLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALARDMELPLLPILARME 467

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             G+++D  + K +S ++     +  ++I+ L+G++FN+ S  QL  +L+ KL+ P   K
Sbjct: 468 QQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEFNVGSNPQLAQVLYEKLQLPILKK 527

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            KTG   +T Q++ +     +P+   ILE+R LSK+KSTY D+LP  + K   R+HT Y 
Sbjct: 528 GKTG--PSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLPGLVAKDG-RIHTTYH 584

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
            A+T TGRL+S +PNLQNIP++T+LG++IRRAF++    +L+SADYSQ+ELR+LAHIA+ 
Sbjct: 585 QAATATGRLSSSDPNLQNIPVRTELGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAED 644

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L   F++  DIH   AAEIFGV  +KV    RR AKT+NF I YG+SP  L+T+L I 
Sbjct: 645 PVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLSTRLSIS 704

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA D I+RYF R+ GI  Y+E T    R+ GYVET+FGRR    ++NS   ++    E
Sbjct: 705 VEEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMFGRRRLMADLNSKNRAVAQAAE 764

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAAIN PIQG+AAD+ ++AM++V ++L   +LAT MLLQ+HDEL+FE PE E+     + 
Sbjct: 765 RAAINMPIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALA 824

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              M         L+VPLKV++     W + +
Sbjct: 825 RQCMSSVA----TLKVPLKVDVGAGKTWADAH 852


>gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311]
 gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG
           18311]
          Length = 879

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/993 (31%), Positives = 489/993 (49%), Gaps = 133/993 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DGSS  +RAF+A        R ++GL  NAI GF  ML  LL+  +    
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFALYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K PE    QLP +R    A GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLAARGIAYYDLAQYEA 116

Query: 118 DDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE   E F +T++S DKDL+QL    T +  + K     E    +++++K
Sbjct: 117 DDIIGTLAKMAENTSEAFQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + V L+AL GD  DNIPG+  IG KT   LL E+G+LE                
Sbjct: 177 MGITPAQFVDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEG--------------- 221

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            I ++ +  + S+                  + E+    +  +FL         ++   T
Sbjct: 222 -IYDHIDEMKKSK------------------MKENLINDKEQAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D  +    P+ + ++ T  KG  +E  +     +    F +       +  E  PQ   
Sbjct: 254 IDTQS----PIEIGLDDTAFKGPNLEKLLAFYDEMGFVHFKN------ALRGEAVPQDFD 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           +  ++                             +     F+I+    D +H++PI I  
Sbjct: 304 VAYVEPSQVTA-------------------DHFSSEDFFYFEIL---GDNYHTEPI-IGF 340

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG--HNI 469
           +  ++K   +                 ST  + L  E               K    ++ 
Sbjct: 341 AWGNEKQIYA-----------------STDTDLLKSEAFQA--------ALSKAVNIYDF 375

Query: 470 KYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL--KSR 524
           K  K++L   GI +     D  L  Y+L S    +++++IA+ +  L     E++  K  
Sbjct: 376 KRSKVLLSHLGIDLPTANFDARLAKYLL-STVEDNELSTIARLYTDLPLETDEVVYGKGA 434

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K +IP  ++    +  H  +   V+     ++  KL       +   ++ P+ +V+++ME
Sbjct: 435 KRAIPEKEV----LLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKME 490

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           + GI++D   L +++ E    +  L ++IY+++GE+FN++SPKQLG ILF K+  P    
Sbjct: 491 MAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEFNINSPKQLGVILFEKMGLPLEYT 550

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++I +  + +HT Y 
Sbjct: 551 KKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGK-IHTRYM 609

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAK 763
              T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+ 
Sbjct: 610 QDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPSTKDAVLLSSDYSQIELRVLAHISG 669

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
              L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L 
Sbjct: 670 DEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGISDFGLSNNLG 729

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R +A +YI  YF R+PGI  Y++      +  GYV T+F RR    +INS   ++RN 
Sbjct: 730 ISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDINSRNFNVRNF 789

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE++ EVP +E+     
Sbjct: 790 AERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKA 849

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ++  +ME A    + L VPL  +      W E 
Sbjct: 850 LVKETMEDA----VELAVPLIADENEGCTWYEA 878


>gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
          Length = 952

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/982 (27%), Positives = 457/982 (46%), Gaps = 101/982 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L ++DG S  +RAF+A P       +G   NAI GF +ML  L++  +     +H A
Sbjct: 62  QPRLLVLDGHSMAFRAFFALPADKFSTANGQHTNAIHGFTSMLINLIKEQQ----PTHVA 117

Query: 63  VIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           V FD     T R   Y +YK  R + P  +  Q+ L+    +A+GI  I + G+EADDI+
Sbjct: 118 VAFDVSDETTHRKTEYTEYKGGRNETPREMNNQIDLIAQVMEAWGIKTITMPGYEADDIL 177

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPE 177
           AT   + EK GF V +++ D+D  QL++    +    K      ++D   +  K+ +PP 
Sbjct: 178 ATLATMGEKAGFEVLLVTGDRDAFQLINDNVFVLYPKKGVSDIPRLDAAAIEAKYFVPPS 237

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +   L AL G++ DN+PG+PG+G KTAA  +  YG L+ +L +   I   K  + + E  
Sbjct: 238 RYSDLAALVGETADNLPGVPGVGPKTAAKWINLYGGLDGVLEHLDSI-GGKVGDALRENV 296

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E  + +R                          RL      L     ++ +       AA
Sbjct: 297 EAVKRNR--------------------------RLNELHTDLALPVTLDDLYQPRPNQAA 330

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
               +    +  E K            TI++  F+   D+ S     ++           
Sbjct: 331 ----LEDLFDKLEFK------------TIRSRLFALYGDEDSPAAERES----------- 363

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I    YT     +++Q ++       S                  A+A+  +  +
Sbjct: 364 -----IETPEYTVPAGAEELQAFLAGGAGQRS------------------ALAVDLIPGR 400

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    I  D       D  G++  ++ +L+    +  +    K+ H  K     L 
Sbjct: 401 IGEDAAALAIVRD-GAAAYIDLAGQDAESENVLAG---WLRDPESPKVLHGFKAALKALT 456

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRKEILKSRKSSIPIDKISD 535
             G+ + G  +D  +  Y++   R ++++A +AQ  L+    +   K+ +  +  D   D
Sbjct: 457 SRGLELEGVVDDTSISGYLIQPDRRTYELAELAQHHLNVGIPQATAKAGQLELSFDG-ED 515

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +  ++++ V+  L      +L   +   +   L+ P+  V++ ME+ GI ID   +
Sbjct: 516 EAAADALVQSAAVVQALSRYFEGELKERRAEELLSTLELPVSRVLADMELAGIGIDMARM 575

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
               A++++ +   +E  +   G + NL SPKQL  +LF +L+ P   K K+G     A 
Sbjct: 576 DDQLADLARVIDQAQEQAFAAIGHEVNLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAAS 635

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
               +    +  +  ++  R+ +K++    +SL   + +   R+HT Y+     TGR++S
Sbjct: 636 LKNLLEKTGHEFLVQLMAHREAAKLR-QMLESLKKSVAEDG-RIHTTYAQNVAATGRISS 693

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENS 774
             PNLQNIPI+++ G+++R  F+       L+SADYSQIE+RI+AH++    L Q +++ 
Sbjct: 694 NNPNLQNIPIRSEEGRRVRGIFVVGEGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDG 753

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+HR V + IF V  E+V+  MR   K +++ + YG++ F L+ QL I   EA   +K 
Sbjct: 754 EDLHRFVGSNIFHVPAEEVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKE 813

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF  + +Y+    +  R +GY  TI GRR +  ++ S    +R   ER A+N+PIQG
Sbjct: 814 YFDRFGAVRDYLRGVVDQARVDGYTATIEGRRRYLPDLTSTDRQLRENAERIALNSPIQG 873

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI +RAM+ VH  L+   LA++MLLQ+HDELV EV   E     +++   M  A   
Sbjct: 874 SAADIIKRAMLGVHAELKAQGLASRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAAA-- 931

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             +L VPL+V I V  +W +  
Sbjct: 932 --DLSVPLEVQIGVGPSWYDAG 951


>gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg]
 gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg]
          Length = 994

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1043 (28%), Positives = 500/1043 (47%), Gaps = 134/1043 (12%)

Query: 2   QKENHLFLVDGSSFIYRAFYA------------------TPLLSRKHDGLPVNAIAGFCN 43
           ++ ++L ++DGSS +   F+                    P + +   G+  NA+ GF  
Sbjct: 16  KEGDYLLVIDGSSLLSTQFFGNLPKEIMFAKTMEEKEKYFPKIMQTATGVYTNAVYGFLR 75

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           +L K++++ +     ++ AV +D    TFR EIYPDYK NR +  E L  Q  L +   +
Sbjct: 76  VLLKIIKDQK----PTYLAVAWDISRNTFRREIYPDYKGNRGETLEPLKDQFKLCQHVLK 131

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKE 160
             GI     + +EADD   T     E+E   + +++ D D +QL++  T L+    T K+
Sbjct: 132 EMGIVQFMDERYEADDFSGTLCQKFEEE-VPIRVMTKDNDYLQLITERTNLWLIHSTAKK 190

Query: 161 E---------------------KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGI 199
                                     E V K++GI P  +  L+ + GDS DNI G+PG+
Sbjct: 191 TDELYEKYGLSKKELNVPDRTFLFTPELVEKEFGIEPSSVPSLKGIGGDSSDNIKGVPGV 250

Query: 200 GYKTAALLLQEYGNLENILI---NASRIKQK--------------------KRRENILEY 236
           G  TA  L++EY  +EN+     N     +K                    K  +  L  
Sbjct: 251 GEATAVALIKEYKTVENLYEILNNLDETGKKEINEYWKTLGIKRTPINALLKISDTELVG 310

Query: 237 AETARLSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            + A LS+ L  ++ D+ +  + LE L +   N          LEF  +    A   D  
Sbjct: 311 EKAAILSKTLATIKKDIDLKDLGLEQLRIH-INTENAQKCFNELEFKTIKMDNAEVEDSS 369

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             N+      I  T N     E E      IK  + +    + +K +             
Sbjct: 370 INNLRFEADKIKITSN---LEEVETLFSNLIKLWEKNQKKLKKTKKSRN----------- 415

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                            +  D +  +++++    AS   +   +   +   + I++    
Sbjct: 416 -----------------DKSDSKITIKEIKKPEYASEDAVGIKLIMENKSLVGISVYYGS 458

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +          I  D                  + S L    E +       +IK     
Sbjct: 459 EASFIIPCEGFITPDF-----------------LTSKLNGLLE-KKITLAIFDIKKYLPY 500

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
           L+          D+ +  Y+L+   S+++  +IA+K+L       KE+  S ++   +  
Sbjct: 501 LNAN--EESPCFDVTIAGYLLEPDASTYEYQTIAEKYLELDLPSEKEVF-SGQTYASLSL 557

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   Q ++ A   S V   ++ +L   L    LL ++  ++ P++  +  ME  GI++D 
Sbjct: 558 LDQDQYKKAACYESYVAHHIYPVLLKLLSERGLLPLFAGIEMPLVYTLYDMEQRGIRVDT 617

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + LK  S ++  +++ LE+ I++L G +FN++SPKQLG+ILF +L    G KTKTG + T
Sbjct: 618 NGLKDYSDQLGVSIVELEKQIFELVGVEFNINSPKQLGEILFQRLGLSYGKKTKTG-YST 676

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +A+ LE+++  ++P+IK IL++RQL+K+KSTYAD L +++     R+H  ++     TGR
Sbjct: 677 SAEVLEKLSS-EHPVIKLILQYRQLTKLKSTYADGLVSYVEGDG-RIHGTFNQTIAATGR 734

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+ +LG+KIR+ FI       + ADYSQIELR+LAH++    L + + 
Sbjct: 735 LSSTEPNLQNIPIRMELGRKIRKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYR 794

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
            + DIHR+ A+E+F    ++V+   R +AK +NF I+YGIS F L   L I R EA +YI
Sbjct: 795 QAQDIHRLTASEVFHTPFDEVTSAQRSNAKAVNFGIVYGISSFSLGQDLDITRKEAEEYI 854

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF  +PG+  Y++      ++ G V+T++GR      + +     R+  ER A+N+PI
Sbjct: 855 NKYFMTYPGVKTYLDGLIEEGKETGVVKTLYGRIRPVPNLTNSNFMKRSAEERIAMNSPI 914

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI V++ L++ KL +++LLQIHDEL+ E  E E+   ++I+   M++A 
Sbjct: 915 QGTAADIMKLAMIHVNQVLKERKLKSRLLLQIHDELLVETHESEVEEVAKIMKEEMQQAA 974

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
               +L VPL+V +   NNW E 
Sbjct: 975 ----SLSVPLEVEVANGNNWYEA 993


>gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 893

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/990 (30%), Positives = 486/990 (49%), Gaps = 113/990 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAFYA    L R   H+GL  NA+  F N L K++     +  
Sbjct: 1   MTNK-KLLLIDGNSLAFRAFYAMYNQLDRMISHEGLHTNALVAFNNFLDKIVDPMAPDL- 58

Query: 58  ASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                V +D      T R +++P+YK  R K+PE    Q P +R      G+   E  G 
Sbjct: 59  ---ALVAWDAGSGKETHRGKLFPEYKDGRSKVPEEFKEQFPYLREMVMLHGLRNYEQAGL 115

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADDII TY+ + E  G++V I++ D+DL QL +    +  T K     E     ++ +K
Sbjct: 116 EADDIIGTYSRMGEAAGYSVIIVTGDQDLTQLATENVTVNVTKKGVTDIESYTPAYIKEK 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +GI P +++  +ALTGD+ DN PG+  +G KTA  LL EY N++                
Sbjct: 176 FGITPVQIIDKKALTGDTSDNYPGVTKVGEKTALKLLAEYNNID---------------- 219

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N+ +  +  + S+                           LI+  + L F     R   T
Sbjct: 220 NLYDNIDKLKQSKM-----------------------KDNLIND-RELAFQA---RELAT 252

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
              DA    P    +   E +G+  E  I     +   Q   L+   +   S Q      
Sbjct: 253 ILTDANLPLP----LEEMEYRGVDFEKIIPFYENLDFKQ--HLAKIKALRKSGQLENTKE 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            +      +   NN                         S  I     +    + I  AI
Sbjct: 307 FDNGINFVELKENN--------------LRAIAMLGDKISVHIEFVGDNYHEGEMIGFAI 352

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +     S  +  +                         LK   ENE  LK   N+K 
Sbjct: 353 GNPEVGYYASRDISLLQT---------------------EELKSVIENEQILKNVFNVKA 391

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK---WLSYTRKEILKSRKSS 527
             ++  R G++++G   D +L++Y+LD+  + + ++++AQ+   +L+       K  K +
Sbjct: 392 QLVLFKRLGLALKGVNFDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGAKFA 451

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P D    + +  H    ++ + +L      +L   +  H+Y  ++ P+  V++ ME  G
Sbjct: 452 VPTD---TNLLLSHIAHKADGLFKLEKPAFTELKQHEQTHLYTDIELPLAFVLADMEYQG 508

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I+++ + L+    ++ + +  ++  IY  +GE+FNL+SPKQLG +LF K+  P   KTKT
Sbjct: 509 IKVNPEYLRNKGKDLYERIADIQSAIYIEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKT 568

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+ +IL++RQL+K+KSTY D L + I  +  ++HT +    
Sbjct: 569 GY--STAVDVLEKLAPQAPIVDHILQYRQLAKLKSTYIDGLLSVIYPKDSKIHTRFLQTL 626

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++++ G+ IR AF+   P  ++  ADYSQIELR+LAH+     
Sbjct: 627 TQTGRLSSVDPNLQNIPMRSEEGRLIRTAFVPSHPNWQIFGADYSQIELRVLAHVTGDKN 686

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKV-SPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           + + F N  DIH   A  +FG+  + V  P  RR AK +NF I+YGIS + LA  L I R
Sbjct: 687 MQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNFGIVYGISDYGLANNLGISR 746

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +EA  +I  YF  FP IHE++   K F  ++GYVETI  RR +  +I +   ++R+  ER
Sbjct: 747 AEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHRRRYLPDIQAKNFNLRSFAER 806

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AMI V+++L  + L  +MLLQ+HDEL+FE P +EI   ++++ 
Sbjct: 807 TAMNSPIQGSAADIIKIAMIKVNEALRKNNLQARMLLQVHDELIFETPVDEIDELTEVVT 866

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           + M+ A    + L VPLKV+    + W + 
Sbjct: 867 NVMDSA----VALDVPLKVDAHHGDTWYDA 892


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/973 (28%), Positives = 467/973 (47%), Gaps = 104/973 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R FYA   L  K DG P   I+GF N +  L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLFYALSSLKNK-DGKPSGMISGFANFIANL----KNEFNSDYIVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR++I P+YKANRP+ P+ LL QLP+     +  G+ +   +G+EADDIIA++
Sbjct: 57  LDSKGKTFRSDIDPNYKANRPEPPKALLDQLPVCIEMIEKMGLCSFCQEGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K    + I++ DKDL QL+     +Y   K+   D +   +K+G+ PE++     
Sbjct: 117 VKKYSK-NMQINIVTHDKDLYQLIGENVRVYSPAKKMLYDRDGCFEKYGVWPEQVRDFLG 175

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + GDS DNIPGI GIG K A  LL+ +G+LE I  N   + Q ++++ ++E  E A +S+
Sbjct: 176 ICGDSADNIPGIKGIGEKGAKKLLENFGSLEKIYENIDNLPQNRQKDLLIEGKENAFMSK 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                                     +L S    LE   L+     T +      E +  
Sbjct: 236 --------------------------KLASLYDGLEVPDLLGAEFPTENPLLKITEIL-- 267

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                    +++     ++  NS+ T + L  + +         
Sbjct: 268 ------------------------KEYNLNRILSALENSKDTDKTLNFKAI--------- 294

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                 +   +   + +  LE +   +F   T ++D+ ++K +  +    ++    SF V
Sbjct: 295 -----TVSTKEQADKILNDLENVKEIAFDTETTSVDSHNAKIVGFSFCWDEKS---SFYV 346

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM 483
                 L      D      L + I +             IG N+KYD  ++   +G++ 
Sbjct: 347 PLAHSYLGAPDMLDKNIAKRLIEAIYTKF----------IIGQNLKYDFRIVRNNFGLNP 396

Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
              + D M++++++D   +S  + ++A+++  Y   +     K       +       +A
Sbjct: 397 PAKYADTMILAWLMDPD-NSVGMDNLAKRYFDYDTIKFENVVKKGENFSSVDVKNAANYA 455

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E++ + L+ +      L  E LL + + L+ P I V+  ME  GI++D   LK++  EI
Sbjct: 456 SEDAWITLKFYKKFCGILSTE-LLDLAKNLEFPFIKVLLNMEENGIKMDISSLKEMINEI 514

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           ++ L  L   IYDLSGE FN++S KQLG++LF  L  P+  KTKTG   +T +       
Sbjct: 515 AEQLKILTNEIYDLSGENFNINSTKQLGEVLFEHLGLPAKKKTKTGY--STNESALSAIS 572

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             + ++  IL +R+L K++STY + L    +     R+ + +    T TGRL+S  PNLQ
Sbjct: 573 ELHAVVPKILAYRELYKLQSTYTEPLLALALKNDENRIFSNFLQTGTSTGRLSSKNPNLQ 632

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP    +  ++R  F+S      +  DYSQIELR+LAH +    L + F    DIH   
Sbjct: 633 NIPAHGSMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFREDEDIHSRT 692

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A  IFG +      + R  AKTINF +IYG+   +L+ +L I RS+A DYI++YF  F  
Sbjct: 693 AISIFGTS----DKEKRAVAKTINFGLIYGMGASKLSNELGISRSDAKDYIEKYFKAFAS 748

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  ++E  K+  ++NGY  T+FGR+ ++D  N+       + ER ++N   QGSAADI +
Sbjct: 749 IKNFMENLKSEAKKNGYTTTLFGRKRYFDFANAT-PMQFAMYERESVNTKFQGSAADIIK 807

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           +AM+ +   L +    T++LLQIHDEL+FEV ++   +  + +   M+      + L VP
Sbjct: 808 KAMVEISPFLNE---NTRLLLQIHDELIFEVRDDMSESFGKKMQEIMQNV----VKLNVP 860

Query: 962 LKVNIKVSNNWQE 974
           LK ++ ++  W +
Sbjct: 861 LKTSLSINKRWGD 873


>gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122]
 gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122]
          Length = 876

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/977 (29%), Positives = 465/977 (47%), Gaps = 109/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A+K GF   II+ D+DL QL +    +Y T K     +    + + +K+        
Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYN------- 169

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                            G+       +    G+  + +   + + +K   + + ++    
Sbjct: 170 -----------------GLTPNQIIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFG--- 209

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                         +    EHL   + +G +L   L+  +   L+++   T + D + IE
Sbjct: 210 -------------TVEGVYEHLD--EISGKKLKEKLQNSKEDALMSKELATINVD-SPIE 253

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             + D   T       + E+ +    K          + +   E+T +           +
Sbjct: 254 VKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASIEDAIEKTFEI----------E 303

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              +N  +T +                  A+        +   +  +  ++ T ++    
Sbjct: 304 TSFDNVDFTSL----------------KEAAIHFELHGGNYLRNNILKFSLFTGEK---- 343

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                        H   ++   N   +     L  + EN +  K+ ++ K   +  HR G
Sbjct: 344 -------------HIVINADDINNYAE-----LVSWLENPNTKKVVYDAKKTYVASHRLG 385

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           I ++    DIML SY++D  R+  D+ S+   +     K+ +             D  + 
Sbjct: 386 IDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLN 445

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +    ++ I      +  +L     + +   L+ P+  ++S+ME  GI  D   L+++ 
Sbjct: 446 PYVASITDAIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEME 505

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            EI + L  L  NI+D +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA D+ +
Sbjct: 506 KEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAVDVLE 563

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G++PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++PN
Sbjct: 564 QLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSVDPN 622

Query: 720 LQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N  DIH
Sbjct: 623 LQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIH 682

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++FGV  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   
Sbjct: 683 TATAMKVFGVEADQVDILMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLAS 742

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPG+ +Y+       +  GYVET+  RR +  +I S   ++R   ER A+N PIQGSAAD
Sbjct: 743 FPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAAD 802

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+   + +++     K+LLQ+HDEL+FEVP+ E+ + S+ +   ME A    + L
Sbjct: 803 IIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQL 858

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+      W + 
Sbjct: 859 DVPLKVDSSYGATWYDA 875


>gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4]
          Length = 901

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/991 (29%), Positives = 480/991 (48%), Gaps = 112/991 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG S   RAFY  P L+    G    AI GF NM+ K + + + ++    FAV F
Sbjct: 3   KLLLIDGHSIANRAFYGVPDLTNSA-GEHTGAIFGFLNMMLKFIDDEQPDN----FAVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++++  YK  R  +   L  Q+P ++   +A G+P I  +G+EADDI+ T  
Sbjct: 58  DVSAPTFRHKMFDAYKGTRKPMLPELKEQIPRIQEMLKAMGVPVITKEGWEADDILGTLA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
            + E++GF VTI+S D+DL+QL +    +     +      E      V + +G+ P++ 
Sbjct: 118 RMGEEKGFDVTIVSGDRDLLQLATDKVKISIPKTKKGGTEIENYYAADVKEAYGVTPKQF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DNIPG+ G                         I  K   + I EY   
Sbjct: 178 IDVKALQGDSSDNIPGVEG-------------------------IGPKTAEKWIAEYG-- 210

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPR---LISFLKALEFTKLINRVATTYDCDA 296
                              +E          +   L +F+   E   L   +AT      
Sbjct: 211 ------------------SIEECHAHVDEMKKGKVLQNFIDQWEMAVLSKELATI----- 247

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ L+  +T                    +  +L  + + +  ++   K  L R +
Sbjct: 248 NVYAPIQLEEGST--------------------KLENLFTEEAYLLCKRYELKKLLPRFE 287

Query: 357 KLSQYPINNDS---YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI-AIAIS 412
             +   + +++   + +I +  +++++  +L+  G      +  ++ A   K I   A+S
Sbjct: 288 ASTTTKVQDNTSESFKRIYDLAEVEEFFAELKKSGK---DFVGASIMAGEDKLIKGAALS 344

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T D               L     + S     L    L           F  +  + K  
Sbjct: 345 TGDATVYVDCAGFITPDYLGHKLIEISKAGVKLCFWDLKNAMHIL----FELMNQDEKAA 400

Query: 473 KLVLHRYG---ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKS 526
             VL + G   I      D+ + +Y+L+  ++++    +A + L      + ++    K 
Sbjct: 401 --VLEKGGKTEIFPTAV-DVAVAAYLLNPTKNAYTADDVASEILGIIIPAQADLFGKTKL 457

Query: 527 SIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           +  ++  S    V  +A  N+ V    +  +  ++  E +L +YE ++ P++  +  ME+
Sbjct: 458 NAALEDDSMLEAVTTYACYNAYVAFAAFEKVIAEIKEEGMLDIYENIEMPLVYTLFDMEL 517

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI +D++ L +  + +S  +  LE++IY  +GE+FN++SPKQLG ILF K+    G KT
Sbjct: 518 QGIAMDKEALAEYGSRLSVRINELEQSIYSQAGEEFNINSPKQLGVILFEKMGIEGGKKT 577

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG   +TA D+ +     NPII +ILE+RQL+K+KSTYAD L   +++   R+ + +  
Sbjct: 578 KTGY--STAADVLEELSATNPIICDILEYRQLAKLKSTYADGLAACVDEDG-RIRSTFMQ 634

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGR++S EPNLQNIPI+ +LG++IR+ F        + ADYSQIELR+LAH++   
Sbjct: 635 TVTATGRISSTEPNLQNIPIRMELGREIRKVFYPKKDCVFLDADYSQIELRVLAHMSGDE 694

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F+   DIHR  A+ +F    ++V+   RR AK +NF I+YGIS F LA  + + R
Sbjct: 695 NLIDAFKAGQDIHRSTASLVFNTPFDEVTDLQRRRAKAVNFGIVYGISAFGLAKDIGVGR 754

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA +YI  YF  +P +HE++E  K+  ++ GYV T++GRR    E+ S     R   ER
Sbjct: 755 KEAQEYIDNYFVAYPKMHEFLEGLKSHAKEKGYVTTMYGRRRPIPELASSNFMTRQFGER 814

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQG+AADI + AM++VH  L    L +K+LLQ+HDEL+ E  E E     ++I 
Sbjct: 815 VAMNSPIQGTAADIIKIAMVNVHDRLLKEGLKSKLLLQVHDELLVETLESERPQVEKLIA 874

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             ME A      L V L++++     W E +
Sbjct: 875 EEMENAA----KLAVDLEIDMNSGKTWAEAH 901


>gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126]
 gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126]
          Length = 879

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/993 (31%), Positives = 484/993 (48%), Gaps = 133/993 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DGSS  +RAF+A        R ++GL  NAI GF  ML  LL+  +    
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFALYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K PE    Q P +R    A GI   ++  +EA
Sbjct: 57  PTHILVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQFPYIREMLAARGIAYYDLAQYEA 116

Query: 118 DDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE   E + +T++S DKDL+QL    T +  + K     E    +++++K
Sbjct: 117 DDIIGTLAKMAENTSEDYQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+L                E
Sbjct: 177 MGITPAQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSL----------------E 220

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            I E+ +  + S+                  + E+    +  +FL         ++   T
Sbjct: 221 GIYEHIDEMKKSK------------------MKENLINDKEQAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D  +    P+ + ++ T   G  +E        +   QF +       +  E  PQ   
Sbjct: 254 IDTQS----PIEIGLDDTAFVGPDLEKLAAFYDEMGFVQFKN------ALGGEAMPQDFD 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           +   +                             +     F+I+    D +H++PI I  
Sbjct: 304 VAYAEPSQVTE-------------------AHFSSDDFFYFEIL---GDNYHTEPI-IGF 340

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG--HNI 469
           +  + K   +                 ST  + L  E               K    ++ 
Sbjct: 341 AWGNDKQIYA-----------------STDTDLLKSEAFQA--------ALSKAVNIYDF 375

Query: 470 KYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL--KSR 524
           K  K++L   GI +     D  L  Y+L S    +++++IA+ +  L     E++  K  
Sbjct: 376 KRSKVLLSHLGIDLPTANFDARLAKYLL-STVEDNELSTIARLYTDLPLETDEVVYGKGA 434

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K ++P  ++    +  H  +   V+     ++  KL       +   ++ P+ +V+++ME
Sbjct: 435 KRAVPEKEV----LLSHLAKKVKVLQVAKQVMLEKLAEHGQSELLFDMELPLANVLAKME 490

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           I GI++    L +++ E    +  L + IY+++GE+FN++SPKQLG ILF K+  P    
Sbjct: 491 IAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEFNINSPKQLGVILFEKMGLPLEYT 550

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++I +  + +HT Y 
Sbjct: 551 KKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGK-IHTRYV 609

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAK 763
              T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+ 
Sbjct: 610 QDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPSTEDAVLLSSDYSQIELRVLAHISG 669

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
              L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L 
Sbjct: 670 DEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGISDFGLSNNLG 729

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R +A +YI  YF R+PGI  Y++      +  GYVET+F RR    +INS   ++RN 
Sbjct: 730 ISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRNF 789

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE+V EVP +E+     
Sbjct: 790 AERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMKA 849

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ++  +ME A    + L VPL  +      W E 
Sbjct: 850 LVKETMEAA----VELAVPLIADENDGRTWYEA 878


>gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3]
 gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3]
          Length = 945

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/978 (26%), Positives = 438/978 (44%), Gaps = 99/978 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG S  YRAFYA P+ +     G P NA+ GF +ML  +L++ R     +H AV
Sbjct: 58  PRLLLLDGHSLAYRAFYALPVENFSTTTGQPTNAVYGFTSMLINVLRDER----PTHVAV 113

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D P  TFR+  Y +YKA R + P   + Q+ L+     A  +P +   G+EADD+IAT
Sbjct: 114 AWDLPTPTFRHTQYAEYKAGRGETPADFVGQVSLIHQVCDALAVPGVSAPGYEADDVIAT 173

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
              +   EG  V +++ D+D +QLV     +  T K      +   + V  K+G+ P + 
Sbjct: 174 LATLGAAEGMDVLVVTGDRDALQLVDERVTVLMTRKGISDMVRFTPDEVQAKYGLSPVQY 233

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD  DN+P +PG                         + +K   + I ++   
Sbjct: 234 PDFAALRGDPSDNLPSVPG-------------------------VGEKTATKWIQQFGSL 268

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A    +LV    ++               G  L + L  +   + +  ++     D   +
Sbjct: 269 A----ELVDHADEI-----------GGKTGASLRAHLSEVIRNRSLTELSRDVPLD---V 310

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P  L +   + + +             T QF  L ++     +   P       ++   
Sbjct: 311 VPAGLRMRPWDREAV--------HQLFDTLQFRVLRERLYAALAIAPPPADEGFEIEL-- 360

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                      ++   ++ +W+ +                   H+  +            
Sbjct: 361 ----------TVLGPGEVARWLAE-------------------HAHRVGRTGLHARGTWG 391

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               V       +   +        LT   ++ L  +  + +  K  H++K   L L   
Sbjct: 392 RGTGVLAGLALAAAGGAAAWIDPTLLTPADVAALGAWLADPNQPKAAHDVKGPMLALTEL 451

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            + + G   D  L +Y+   G+ S D+A +  ++L              + +D   ++  
Sbjct: 452 DLPLAGVTSDTALAAYLALPGQRSFDLADLVARYLHRDLSADPVPGGQQLTLDGSGEADQ 511

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                  +   L+L   L   L       +   ++ P++ V++ ME  GI +D + L ++
Sbjct: 512 AHADAVRARACLELADALDADLERRSAATLLRDIELPLVTVLAGMERAGIAVDSEHLTEL 571

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
                  + ++    +++ G  FNL SPKQL  ILF +L  P   K KTG          
Sbjct: 572 QKHYGGEVSAVAAQAHEIVGRPFNLGSPKQLQQILFDELGLPKTKKIKTGYTTDADALAW 631

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                D+P++  +L  R ++++K T  DSL   I+    R+HT ++     TGRL+S +P
Sbjct: 632 LAVQSDHPLLPVLLRHRDVARLK-TVVDSLIPMID-DIGRIHTTFNQTIAATGRLSSADP 689

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+T  G++IRRAF+       L++ADYSQIE+RI+AH++    L + F +  D+
Sbjct: 690 NLQNIPIRTAEGRQIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDL 749

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H  VAAE FG+ + +V P++RR  K +++ + YG+S F LA QL I   EA +++  YF 
Sbjct: 750 HTFVAAEAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFA 809

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF G+ +++       R++GY ETI GRR +  ++ S  S  R + ER A+NAPIQGSAA
Sbjct: 810 RFGGVRDFLRGVVERARKDGYTETILGRRRYLPDLTSDNSQRRQMAERMALNAPIQGSAA 869

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM+ V ++L     A+++LLQ+HDELV E+   E     +++   M  A      
Sbjct: 870 DIIKIAMLGVDRALCAGGYASRLLLQVHDELVLEIAPGEHDAVERLVRAEMTSA----YT 925

Query: 958 LRVPLKVNIKVSNNWQEE 975
           + VPL V++     W + 
Sbjct: 926 MSVPLDVSVGAGCTWDDA 943


>gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
 gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
          Length = 889

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/987 (32%), Positives = 485/987 (49%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  LL+  +     S
Sbjct: 14  DKKKLLLIDGSSVAFRAFFALYQQLDRFKNDNGLHTNAIYGFHLMLNHLLERVQ----PS 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 70  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +A+K+ F VTI+S DKDL+QL    T +  + K     E    E++++K GI 
Sbjct: 130 IIGTLGRLAKKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKMGIT 189

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  IG KT   L         +L + S        E I E
Sbjct: 190 PAQFIDLKALMGDKSDNIPGVTKIGEKTGIKL---------LLEHGS-------LEGIYE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             ++ + S+                  + E+    +  +FL         ++   T D  
Sbjct: 234 NIDSMKASK------------------MKENLVNDKEQAFL---------SKTLATIDTK 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + ++     G  IE        +   Q     + +    SE           
Sbjct: 267 A----PIEISLDDLVYSGPDIENLGKFYDEMGFKQLKQALNASQANQSEA---------- 312

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                           +N   + +  + + +  S  F       +      I  A S  D
Sbjct: 313 ----------------LNFTMVDKVSEDMLSADSI-FHFELFGENYHTDDLIGFAWSCGD 355

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++    LK+F E        ++ K  K++
Sbjct: 356 K--------------------LYATDKLELLQD--PILKEFLE--KTPLKVYDFKKAKVL 391

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R+G+ ++    D  L  Y+L S   +++I++IA  +      +      K  K +IP 
Sbjct: 392 LNRFGLDLQAPAFDSRLAKYLL-STVENNEISTIANLYGQTYLVDDETFYGKGVKKAIP- 449

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                    EH +    V+++   +L  KL     L +   +++P+  V+++MEI GI++
Sbjct: 450 ---ERETFLEHLVRKVAVLVETEPVLLEKLSENGQLDLLYDMEQPLALVLAKMEIAGIKV 506

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG++LF KL  P     KT   
Sbjct: 507 KKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGELLFEKLGLPIEYTKKTKTG 566

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 625

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 626 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 685

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 686 AFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 745

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 746 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 805

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L   +  TKMLLQ+HDE+V EVP+ E+ +  +++  +M
Sbjct: 806 NSPIQGSAADILKIAMIQLDKALVAGRYQTKMLLQVHDEIVLEVPKSELASIKKLVKQTM 865

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 866 EEA----IQLSVPLIADENEGVTWYEA 888


>gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626]
 gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626]
          Length = 903

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/985 (28%), Positives = 453/985 (45%), Gaps = 106/985 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +K   + ++DG+S ++RAF+A        DG P  A+ GF NM  K++++ R        
Sbjct: 13  KKRKTIAVIDGNSLMHRAFHAIRQPMSAPDGTPTGALFGFFNMFIKMIESFRPNG----V 68

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              FD      R ++ P YKA RP + + L  Q P+V+       IP  E++G+E DDI+
Sbjct: 69  ICAFDKGKPQVRIDMLPQYKAQRPPMDDALHVQFPIVKTLLGVLDIPVCELEGWEGDDIL 128

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPP 176
            T     E+ G+ + + + D+D+ QL +    +  T K       +  E V   + GI P
Sbjct: 129 GTLARRGEEAGYEMLLFTGDRDMYQLSTENVKIVSTRKGVSDVSIMTPESVEDLYAGITP 188

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + +     L GDS DNIPG+PGIG K AA L+ EYG+L+ +L +A  +K  K  EN+   
Sbjct: 189 KLVPDFYGLKGDSSDNIPGVPGIGPKKAAQLIVEYGSLDEVLAHADEVKG-KMGENLR-- 245

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                        + D                               L++R   T   DA
Sbjct: 246 -----------THKEDA------------------------------LLSRKVATIRTDA 264

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ +++   +         +          F+ ++ +  ++  E+       ++ +
Sbjct: 265 ----PIDINLADAQFPTFDPNKVV---AAFSKLGFTGMTGRLVRLAGEKGVSSANPQQTE 317

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 +   +   +      +     L         + T   D           +    
Sbjct: 318 VPVDPQLALPA-KLLEAEDAWEALKAALSRKEWLGVALDTGKQD---GSLFGFGHTLWVA 373

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK----YD 472
                 K              +     +  +EIL   K    +     + H++      +
Sbjct: 374 TTQELCKF-------------EDDNATSALREILE--KGLMVSGDVKALLHDVSPVDSSE 418

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
             V     +      D+ + +Y+L+S RSS  I S+ + +              S+  DK
Sbjct: 419 PEVFVPDDVDASRIFDVGVAAYLLESDRSSFTIPSLVEFYFGVEL---------SVGSDK 469

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I  +  +  A             L  KL  +K L ++E ++  ++ V++ ME  G+ +D 
Sbjct: 470 IPAAAYEAVAARALKAT------LTKKLEDDKSLELFETIEMGLLPVLAAMERRGLFVDP 523

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS--GAKTKTGQW 650
             L + S E+  ++ S  E I++ +GE FNL SP QL  +LF  L  P+    KT++G +
Sbjct: 524 AKLAEQSKELGADIASRVERIHEAAGETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGFY 583

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A+           I+ ++LE+R+ +KIKSTY D+LP  I     R+HT ++     T
Sbjct: 584 STNAKV-LSDLADTYQIVADVLEYRERAKIKSTYLDALPALIRGD-HRIHTTFNQTVAAT 641

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIP +++LG ++R AF  P     ++ DYSQIELR+LAH++    L   
Sbjct: 642 GRLSSSDPNLQNIPTRSELGHRVRTAFTVPSGHVFLACDYSQIELRLLAHLSGDEHLIAA 701

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F++  D H   A+  FGV +E+V+P++R  AK +NF I+YG   + LAT L+IPR+EA D
Sbjct: 702 FQSGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGIVYGQQAYGLATSLKIPRAEAQD 761

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I RYF  +PG+  Y++++     + GY  T++GR+ H  E       +    ER A+N 
Sbjct: 762 MIDRYFAAYPGVRAYLDESVRIAHEKGYAVTMYGRKRHIREFGQHNRQLIAFGERTAMNH 821

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QGSAADI + AMI V K L     A K++LQIHDEL  EVP +EI   S+++  +ME+
Sbjct: 822 PMQGSAADIIKIAMIRVEKRLRKEGCAAKLILQIHDELDLEVPNDEIEAVSRLVKETMEE 881

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
                + L+VPL  ++    NW E 
Sbjct: 882 V----VELKVPLIADVSYGPNWAEA 902


>gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 456/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ + P +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTTYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                             +D  A     
Sbjct: 244 RNRKLNALVRDLDLDVTLAELARHP-------------------------WDPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 279 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++    +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 314 --------TVLEPGTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K  H+ K     L   G 
Sbjct: 358 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKAMHSAKGPVEALAERGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E+ +       +D   D   + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEV-EDNSDQAMLDFGEDHFAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 462 -SMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAVDMDIFEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   EE  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 581 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 639 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 875 VPLTVSIGVGRSWFDA 890


>gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 882

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/972 (27%), Positives = 463/972 (47%), Gaps = 103/972 (10%)

Query: 15  FIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFR 73
             YRAF+A P  + +   G   NA+ GF +ML  LL++       +H AV FD    TFR
Sbjct: 1   MAYRAFFALPAENFKTKTGQVTNAVFGFTSMLINLLRDE----APTHLAVAFDLSRKTFR 56

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           +E + DYKANR   P+    Q+ LV+      GIP++  + FEADDIIAT T  A  +GF
Sbjct: 57  SETFADYKANRSTTPDEFRGQVDLVKEVLDVLGIPSLVKENFEADDIIATLTTQATADGF 116

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
            V I + D+D +QLV+    +    +      +   + V +K+G+ P +     AL GD 
Sbjct: 117 DVLICTGDRDALQLVTEHVTVLYPKRGVSEMTRFTPDAVEEKYGLTPRQYPDFAALRGDP 176

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DN+P IPG+G KTAA  ++++G+L++++     +K  K  + +  +  + +L+R+L  L
Sbjct: 177 SDNLPSIPGVGEKTAAKWIKQFGSLDDLIDRVDEVKG-KVGDALRAHLSSVQLNRQLTEL 235

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
                  + LE                                      I P  L++   
Sbjct: 236 IR----DVELE--------------------------------------IAPSGLELRPW 253

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
           + + +    +      ++   F++L     + +         L      +    +  +  
Sbjct: 254 DREAVHALFDELEFRVLRDRLFATLQSAEPEADEGFEVSGSALAPGALGAWLTAHASAGE 313

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            +                 + SF+ +  ++    S   AIA +T D +          ++
Sbjct: 314 PV-----------------ALSFRAVGTSV---RSDLRAIAFATADGEGA--------YV 345

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-D 488
           D++     D         +               K GH++K     +   G  + G   D
Sbjct: 346 DVTAMDQADDAALAAWLADP-----------AIRKTGHDLKTPLHAIRARGWVLSGLAMD 394

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN--- 545
             L +Y++  G+ + ++  +A ++L    +         + +       +++  I++   
Sbjct: 395 TALAAYLVRPGQRTFELDDLALRYLHRELRSETDGGDGQLSLLDGGAEGLEQKEIQDELV 454

Query: 546 -SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            +  I +L   L  +L       +   L+ P+++V++++EI G+ +D + L  + A    
Sbjct: 455 KARAIFELAGALEKELEQIGGAKLLAELELPLLEVITELEIAGVAVDLEQLTTLEAHYLS 514

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +    E  Y + G++ NL SPKQL  +LF +L  P   +TKTG               +
Sbjct: 515 RVTQAAEEAYAVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAEALQGLFEKTE 574

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +P ++++LE R  +K+++T  + L   +     R+HT        TGRL+S EPNLQNIP
Sbjct: 575 HPFLQHMLEHRDATKLRTT-VEGLIKSV-ADDGRIHTTLLQTIAATGRLSSTEPNLQNIP 632

Query: 725 IKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           ++T+ G++IR AF+       L++ADYSQIE+RI+AH+++   L + F +  D+H  VA+
Sbjct: 633 VRTEEGRRIRDAFVVGEGFTELMTADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVAS 692

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
             F +  E+++P++R   K +++ + YG+S + L+ QLRI   +A   ++ YF RF G+ 
Sbjct: 693 RAFSMPPEEITPELRYRVKAMSYGLAYGLSAYGLSQQLRISTEDAKSQMEAYFDRFGGVR 752

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +Y+        +NGY ET+FGRR +  ++NS     R + ER A+NAPIQGSAADI + A
Sbjct: 753 DYLHSVVGVAAKNGYTETVFGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVA 812

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M++VH++L + KL +++LLQ+HDELV EV E E     Q++   M  A      L VPL+
Sbjct: 813 MLNVHRALVEAKLKSRILLQVHDELVLEVAEGEKEQLEQLVREGMGSAYA----LAVPLE 868

Query: 964 VNIKVSNNWQEE 975
           V++    +W E 
Sbjct: 869 VSVGYGRSWNEA 880


>gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 456/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ + P +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                             +D  A     
Sbjct: 244 RNRKLNALVRDLDLDVTLAELARHP-------------------------WDPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 279 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++    +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 314 --------TVLEPGTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K  H+ K     L   G 
Sbjct: 358 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKAMHSAKGPVEALAERGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E+ +       +D   D   + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEV-EDNSDQAMLDFGEDHFAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI +D D+ + + +
Sbjct: 462 -SMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAVDMDIFEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   EE  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 581 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 639 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 875 VPLTVSIGVGRSWFDA 890


>gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
 gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
          Length = 876

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/974 (31%), Positives = 467/974 (47%), Gaps = 112/974 (11%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DGSS  +RAFYA   L     G+  NA+ GF  ML KLL+    E       + FD  
Sbjct: 7   ILDGSSLFFRAFYAL-QLPPNARGVHTNAVHGFAMMLVKLLKELAPEQ----IVIAFDKS 61

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR EIYPDYK  R K PE L  Q+PL++   +A GIP +E   +EADDII T    A
Sbjct: 62  RTTFRTEIYPDYKGTRDKTPEELTAQIPLLKELAEALGIPFLERDHYEADDIIGTLGTQA 121

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184
             EG    +++ D+D +QL+ P   +  T K     +  D     +++G  P +++ ++ 
Sbjct: 122 VDEGTETAVVTGDRDALQLIRPHLTVMLTKKGISEMKSYDAAVFEEEYGFVPGRLIDMKG 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PGIG KTA  LL  YG++EN+L +A+ +  KK   +++          
Sbjct: 182 LMGDSSDNIPGVPGIGPKTATKLLIAYGSIENVLDHAAEVSGKKLSTSLI---------- 231

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                                                  L+++   T +C+   +     
Sbjct: 232 ---------------------------------EYRDQALLSKALATIECNVPKLRYQAE 258

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D     + G A+E            +  S   + +   S    Q LF E         + 
Sbjct: 259 DFRMRPDLG-ALEAFCREYELRTVWRTLSDYLKPTAAASAAVEQSLFAENTAAAVPDLMA 317

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            D     ++  D++     L      +   +      F  +  A+A+   D       + 
Sbjct: 318 AD-----LDAADMEA----LRAAEEIAVGAVFGGTAPFV-RLEALALVYED--ACRIVRA 365

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM- 483
            T   D                  + + L +         +  N K         G+S+ 
Sbjct: 366 GTAHFDA-----------------VTALLAE------RPVVLWNAKRYVHA----GLSIG 398

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
               D+ L  Y+L    S  DI   A          +      +     +SD Q  E   
Sbjct: 399 ADAFDLELGDYLLHPEESRRDIERTAF--------ALCGDAAEA--PADLSDEQRAE--- 445

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             + +  +L   L+  L    LL +Y+ ++ P++ V++ ME TGI +++  L++  A  +
Sbjct: 446 REAQLAARLHSPLQAALAEAGLLPLYQDVELPLVPVLAAMEQTGIYVNRTALERERAAAN 505

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINC 662
             + +L E I+ L+G +FN+SSPKQLG++LF +L+  +G K  KT    +T  +  +   
Sbjct: 506 ARIDALAEEIHALAGMEFNISSPKQLGEVLFERLELAAGTKIKKTKTGYSTNAETLEELR 565

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
             +PI+  +L +R  +K++STY D +   I   T RV+T ++   T TGRL+S +PNLQN
Sbjct: 566 DRHPIVDKVLTYRMWTKLRSTYLDGIGALIRPETGRVYTNFNQTVTATGRLSSSDPNLQN 625

Query: 723 IPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           IP++T+ G+ +R  F        L+SADYSQIELRILAH++    L   F +  DIH   
Sbjct: 626 IPVRTEEGRAVRALFEPGEGYDVLLSADYSQIELRILAHMSGDATLIDAFRHGQDIHART 685

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AAE+FGV I+ V+ + RR AK +NF I+YG+S + L+  LRIPR EAA YI+RYF R+ G
Sbjct: 686 AAEVFGVPIDAVTGEQRRRAKAVNFGIVYGLSDYGLSRDLRIPRKEAAGYIERYFERYHG 745

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + E+++KT      NGYV T++GRR     INS     R+  ER A+N PIQG+AAD+ +
Sbjct: 746 VREFLDKTVADAHANGYVTTLYGRRRELSAINSRNYMQRSFAERMAMNTPIQGTAADLIK 805

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI  H +L    + +++LLQ+HDELV E  E EI   S ++  +M  A      L VP
Sbjct: 806 IAMIRAHDALHAAGVKSRILLQVHDELVLEAAEAEIAQVSGLLRTAMSGAA----ELAVP 861

Query: 962 LKVNIKVSNNWQEE 975
           L V++ +  NW E 
Sbjct: 862 LAVDVHIGKNWAEA 875


>gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
 gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
          Length = 878

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/981 (30%), Positives = 485/981 (49%), Gaps = 124/981 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + L+DG+S  YRAF+A PLL+ +H G+  NA+ GF  ML K+L   +     +H  V 
Sbjct: 9   KKILLLDGNSLAYRAFFALPLLTNEH-GIHTNAVYGFTMMLQKILDEEQ----PTHMIVA 63

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ + +YK  R K P  L  Q P +R    A+GI   E++ +EADDII T 
Sbjct: 64  FDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPYLRKLIDAYGIKRYELENYEADDIIGTL 123

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  AE+EG  V +IS DKDL QL SPTT +Y T K     EK  +EH+            
Sbjct: 124 SLEAEREGDEVVVISGDKDLTQLASPTTTVYITRKGITDIEKYTVEHIK----------- 172

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                         G+  +       L+   G+  + +     + +K   + +  +    
Sbjct: 173 -----------EKYGLTPLQIIDMKGLM---GDASDNIPGVPGVGEKTALKLLAAHGS-- 216

Query: 241 RLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                         +    E +   +     +LI+                         
Sbjct: 217 --------------VEGVYEAIEQQKGKMKEKLIA------------------------- 237

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                D+     +   IE +   +  I    +S           ++   K  LE+++  +
Sbjct: 238 ---NEDLAYISKQLATIERQAPIEIQIDELSYSGPDQDELVKVWKELAFKSLLEKMEYTA 294

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  +  +   +++ T D      ++      +  +            + ++++T      
Sbjct: 295 EETVKEELKFEVLTTLDPSILKDEM------AVHLELYDEHYHSCDLLGVSLATE----- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                            +D+        E     + + ++    K   + K       R+
Sbjct: 344 -----------------RDTYVIPMDVVERSEEFRAWCKDSTKKKFMSDSKAATAAFLRF 386

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKIS 534
           G+ +RG + D+ML +Y+++   +  D+ASI Q++    +S   +   K  K  +P D I 
Sbjct: 387 GVELRGVDFDLMLGAYIVNPSLTYTDMASIVQEYGHNDVSTNEQIYGKGAKKKVPEDAI- 445

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              + EH    +  I ++  L+  KL   +   +Y++L+ P+  V+ QME  G+ +++D 
Sbjct: 446 ---LHEHIARKARTIWKVRPLIMAKLEDNEQFDLYDKLELPLATVLGQMESLGVMVNRDQ 502

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++  E++  L  +E +I+ L+G++FN++SPKQLG ILF KL  P+  KTKTG   +TA
Sbjct: 503 LVEMGKELAHKLEKIESDIHGLAGQEFNINSPKQLGVILFEKLGLPALKKTKTGY--STA 560

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +   G + II +IL +RQL K+ STY + L   I++  + +HT +  A T TGRL+
Sbjct: 561 ADVLEKLEGQHEIISHILMYRQLGKLLSTYIEGLLKEIHEDGK-IHTRFQQALTTTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S+ PNLQNIP++ + G+KIR+AF+   P   +++ADYSQIELR+LA +++   L Q F++
Sbjct: 620 SINPNLQNIPVRLEEGRKIRKAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKD 679

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIH   A+++F V  E+V+  MRR AK +NF I+YGIS + L+  L IPR EAA +I+
Sbjct: 680 DRDIHTTTASDVFHVTEEEVTSDMRRAAKAVNFGIVYGISDYGLSQNLNIPRKEAAAFIE 739

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           RYF  FPG+  Y+       +++G+V T+  RR +  +I S   ++R+  ER A+N PIQ
Sbjct: 740 RYFASFPGVKSYMTNIVADAKRDGFVTTLMNRRRYLPDITSSNFNLRSFAERTAMNTPIQ 799

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI ++AMI +  ++E   L  +MLLQ+HDEL+FE P EE+    +++   ME A  
Sbjct: 800 GSAADIIKKAMIDMDAAIEREGLQARMLLQVHDELIFEAPPEELDHLMKLVPEVMENA-- 857

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             + L VPLKV+I   + W +
Sbjct: 858 --VKLSVPLKVDIAHGSTWYD 876


>gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 880

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/991 (31%), Positives = 480/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        R H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFRNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLADENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+L                E
Sbjct: 177 MGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSL----------------E 220

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            I E+ E                                          F     +    
Sbjct: 221 GIYEHVE-----------------------------------------GFKASKMKENLL 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INTT    I ++  I     + +          SK   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTTSPITIGLDDIIYNGPDVAS---------LSKFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            +   ++ Q  I   SY ++ +                  F+++ D  +      I  A 
Sbjct: 291 KDLASQMPQEAIAAVSYQEVTSLSAN-----LFSDEDIFYFEVLRD--NYHREDIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+ ++                 KK FE        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLSLLST--------------DLFKKVFEKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   G+ +     D  L +Y+L S    +++ +IA+ +   + +       K  K 
Sbjct: 379 SKVLLSHLGLDLVAPSYDARLANYLL-SNVEDNELTTIARLFTDISLEADDSIYGKGVKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P  ++       H      V+L     +  KL     + +Y  ++ P+ +++++MEI 
Sbjct: 438 AVPEKELLLG----HLARKVKVLLDSRAPMVEKLADHDQIALYHEIELPLANILAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKAIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFTPSQEDAVLLSSDYSQIELRLLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG+   E V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++  +L+      KMLLQ+HDE+V EVP  E+    +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIVLEVPNTELAAVKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL+ +     +W E 
Sbjct: 853 KETMEVA----VDLAVPLRADENAGQSWYEA 879


>gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 871

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/984 (29%), Positives = 477/984 (48%), Gaps = 127/984 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              + L+DG S + RAFY  P L+   +GL  NAI GF N+L+K+L+  + E    +  V
Sbjct: 2   NEKIVLIDGHSILNRAFYGVPDLTN-SEGLHTNAIYGFLNILFKILEEEKPE----YLTV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+E+Y +YK  R  + E L  Q+P+++   QA G+  IE  G+EADD++ T
Sbjct: 57  AFDVHAPTFRHEMYDEYKGTRKPMLEELRQQVPVMKEVLQAMGVKLIEQAGYEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
            + +AE++G  V+IIS D+DL+QL +    +     +      E    + V +K+ + P+
Sbjct: 117 LSVLAEEKGMDVSIISGDRDLLQLATEKVKIRIPKTKKGKTEIENYYAKDVEEKYFVTPK 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-- 235
           + + L+AL GD+ DNIPG                          + I +K   + I +  
Sbjct: 177 EFIDLKALMGDTSDNIPG-------------------------VASIGEKTATKIITQFH 211

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A                                 + L  L+  +    +   YD  
Sbjct: 212 SIENAY--------------------------------AHLDELKPPRAGKALQEQYDKA 239

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             + E               I   +      + ++  +L  + + +  ++   K  L R 
Sbjct: 240 QMSKELAT------------IHVHVPVSYDFEEAKLGNLYTEEAYVYFQKLEFKNLLSRF 287

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +      DS+  I   +D     +                 +A H++ + I+     
Sbjct: 288 DMSAPENSIEDSFKIIYAKEDADAVFE-----------------NAMHAEVVGISFGKNM 330

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKL 474
           +     F        + V    +        +EI  SYLKK  E         +I   K 
Sbjct: 331 ENVLPLFADAAEINHIGVSFDDEKIYTIYTGEEITFSYLKKKIEELTACVKTVSICNIKE 390

Query: 475 VLHRYGISMRG---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
            L    I+        D ++ SY+L+  +S +    +A++ L+    + ++  + S    
Sbjct: 391 ALKW--ITFANETSAFDPIIASYLLNPLKSDYAFEDVAREQLNILIDDKMEEARKS---- 444

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
                         +    +    L  +L  +K+ H++  ++ P+   +  ME  G+++ 
Sbjct: 445 -----------CYTAYTAYKSVFFLSDRLKEKKMEHLFTDIEMPLAFTLFDMEQAGVKVK 493

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + LK    ++   +  LE  IY+++GE FN++SPKQLG +LF  L  P+G KTKTG   
Sbjct: 494 AEELKVYGQQLGGKINELETEIYEIAGETFNINSPKQLGVVLFEHLNLPNGKKTKTGY-- 551

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +TA D+ +    D PI+  ILE+RQL+K+KSTYAD L N I +   R+H  ++   T TG
Sbjct: 552 STAADVLEKLAPDYPIVSKILEYRQLAKLKSTYADGLANFIQEDG-RIHGKFNQTVTATG 610

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R++S EPNLQNIP++ +LG+ IR+ F+       + ADYSQIELRILAH +    L   +
Sbjct: 611 RISSTEPNLQNIPVRMELGRLIRKVFVPEEDYVFVDADYSQIELRILAHCSGDESLISAY 670

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           + + DIHR+ A+++F +  ++V+   RR+AK +NF I+YGIS F L+  L I R EA +Y
Sbjct: 671 KEARDIHRITASQVFHIPFDEVTDLERRNAKAVNFGIVYGISSFGLSQDLSITRKEAGEY 730

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  +PGI  +++ T    ++ GYV T+FGRR    E+ S     R+  ER A+NAP
Sbjct: 731 IDNYFKTYPGIKTFLDDTVAHAKEQGYVVTLFGRRRPVPELESGNFMQRSFGERVAMNAP 790

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI V+++L++ ++ +K++LQ+HDEL+ E  ++E+     I+   ME+A
Sbjct: 791 IQGTAADIMKIAMIGVNRTLKEKQMKSKLVLQVHDELLIEAYKDEVEEVKSILKREMEEA 850

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
                +L VPL +++   N+W E 
Sbjct: 851 A----SLSVPLDIDMHTGNSWYEA 870


>gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
 gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
          Length = 891

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/979 (27%), Positives = 445/979 (45%), Gaps = 101/979 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  YRAFYA P  +     G   NA+ GF +ML  +L++ +     +H  V 
Sbjct: 3   RLLLLDGHSLAYRAFYALPAENFSTVTGQHTNAVYGFTSMLINMLRDEQ----PTHVVVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E Y +YKA R + P+    QLPLV+    A  I   E+ G+EADDIIAT 
Sbjct: 59  FDKSRHTFRTEEYAEYKAGRARTPDEFAGQLPLVKEVLDALRIRYCELDGYEADDIIATI 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
              A+ +G  V I S D+D  QLVS    +   V+      ++    + +K+G+PP +  
Sbjct: 119 ASEADTKGVEVLICSGDRDTFQLVSDHVTILYPVRGVSEVWRMGPAQIEEKYGVPPARYS 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L A+ G+S DN+PG+PG+G KTAA  + ++G LE                 I+   +  
Sbjct: 179 DLAAMVGESSDNLPGVPGVGPKTAAKWITQFGGLEG----------------IVAGIDQI 222

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                   +   G  L   L  +   + +N++            
Sbjct: 223 ------------------------KGKAGEALRDHLDQVLRNRRLNQLVKD--------A 250

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           PV   I+  E    + E   +        +F  L D+         P+      ++  + 
Sbjct: 251 PVGCTIDDLERAQWSRE---EVHEVFDRLEFRVLRDRLFAEVEASAPEADEGFDVEGRT- 306

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                      +  +D+  W+ +    G  +                 ++++    +   
Sbjct: 307 -----------LAAEDVPGWLGERVAGGERA----------------GLSVTGTWARGTG 339

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                 I          D T  +   +  +     + E+    K  H+ K     L   G
Sbjct: 340 DATALAIAAAGGAAAWVDLTALDPAGEAAVGA---WLEDASRPKAMHDAKGPIEALAARG 396

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQV 538
             +RG   D  L +Y++   + ++ +  +  + L         +  +  +     +D + 
Sbjct: 397 WILRGLTSDTQLAAYLVKPDQRTYHLDDLVLRHLRRELSATTDTHGQGMLDFAGDADEKA 456

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
               +  +  +  L  +L  ++       +   ++ P+I V+++ME TGI +D D L  +
Sbjct: 457 ALKEMVRATAVRDLAAVLDEQVAATGGTELLSDIELPLIHVLAKMERTGIAVDVDGLSTL 516

Query: 599 SAEISKNLLSLEENIYD-LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
               +  +   +++ +D + G++ NL SPKQL  +LF  L  P   KTKTG         
Sbjct: 517 EETFAAKVTQAQQDCWDAIGGDQINLGSPKQLQVVLFETLGMPKTKKTKTGYTTDADALA 576

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E     ++P ++ +L  R  +K++ T  + L   ++    R+HT Y      TGRL+S E
Sbjct: 577 ELHAKTEHPFLEALLRHRDAAKLRVT-VEGLQKSVSDDG-RIHTTYLQTIAATGRLSSTE 634

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQN+PI+T+ G++IR  F+       L+SADYSQIE+R++AH++  + L + F +  D
Sbjct: 635 PNLQNVPIRTEEGRRIRELFVVGDGYDALMSADYSQIEMRVMAHLSGDSGLIEAFRSGED 694

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +HR V +++FGV  E V+  MR   K +++ + YG+S + L+ QL I   EA   ++ YF
Sbjct: 695 LHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYGLSAYGLSKQLAISTEEAKGLMEGYF 754

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RF G+  Y+++     R  G+  T+FGRR +  ++ S     R + ER A+NAPIQGSA
Sbjct: 755 ARFGGVRAYLDEVVAEARGTGFTATMFGRRRYLPDLTSDNRQRREMAERMALNAPIQGSA 814

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI V ++L +    T++LLQ+HDELV EV  +E     +I+   M  A     
Sbjct: 815 ADIMKVAMIGVDRTLTEAGARTRILLQVHDELVLEVAADEQADVERIVREQMGHAA---- 870

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            + VPL VNI V  +W + 
Sbjct: 871 EMDVPLDVNIGVGRSWHDA 889


>gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20]
 gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains
           [Leuconostoc citreum KM20]
          Length = 893

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/990 (31%), Positives = 492/990 (49%), Gaps = 113/990 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  +RAFYA    L R   H GL  NA+  F N L +++   + +  
Sbjct: 1   MTKK--LLLIDGNSLAFRAFYAMYNQLDRMISHKGLHTNALVAFNNFLDQIVDPMQPDL- 57

Query: 58  ASHFAVIFDYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                V +D      TFR E++ +YK  R K P     Q P +R      G+   E  G 
Sbjct: 58  ---AVVAWDAGSGKTTFRGELFSEYKDGRSKAPSEFTEQFPYLREMVALHGLRNYEQPGL 114

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADDII T++ + E+ G+ V I++ D+DL QL +    +  T K     E    +++++K
Sbjct: 115 EADDIIGTFSRMGEQAGYNVIIVTGDQDLTQLATDNITVNVTKKGVTEIEAFTPDYIMEK 174

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           + + P +++  +ALTGD+ DN PG+  IG KTA  LL+ Y +++                
Sbjct: 175 FELTPSQIIEKKALTGDTSDNYPGVTKIGEKTALKLLKTYHDID---------------- 218

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N+  + +  + S+                  + E+    +  +F           R   T
Sbjct: 219 NLYRHIDDMKPSK------------------MKENLISDQASAF---------RARQLAT 251

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
              DA     + L +   E +GI  +  +     I          Q +KI + Q   +L 
Sbjct: 252 ILTDAT----LDLPLEELEYRGIDYDKLVPFYENID------FKKQLAKIKASQKSGQLV 301

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                      +          T +          +   +  I     +   +  I   I
Sbjct: 302 SHNQSTERPLSVV---------TLNENNLRAIAMMVDKVAVHIEMSGSNYHTADMIGFVI 352

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                    S  +  +                         L+   EN    K   N+K 
Sbjct: 353 GNPATGYYASRDMSLLQKP---------------------ELRAVIENGDIKKNVFNVKA 391

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK---WLSYTRKEILKSRKSS 527
             ++  R G++++G   D +L++Y+LD+  + ++++++AQ+   +L+   +   K  K +
Sbjct: 392 QLILFKRLGLTLKGAQFDFLLVAYLLDTTDNDNEMSTLAQRFDVYLTEDEEIYGKGAKYA 451

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P D+     V  H    ++ ++QL +     L   +  H+Y  ++ P+  V+++ME  G
Sbjct: 452 VPDDE---ELVLMHLAHKADALIQLEMPALSALQSHQQTHLYTEIELPLAHVLAEMEYQG 508

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            +ID+  L+ +  ++   + ++EE IY  +GEKFNL+SPKQLG +LF K+  P   KTKT
Sbjct: 509 FKIDRKRLQVIGEDLEARIHTIEEAIYLEAGEKFNLNSPKQLGILLFEKMGLPIIKKTKT 568

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL++RQL+KIKSTY + L   ++    ++HT +    
Sbjct: 569 GY--STAVDVLEKLASQAPIVEHILQYRQLAKIKSTYVEGLLAVVHTEDSKIHTRFLQTL 626

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++T+ G++IRRAF+   P  ++  ADYSQIELR+LAHI     
Sbjct: 627 TQTGRLSSVDPNLQNIPMRTEEGRQIRRAFVPSQPNWQIFGADYSQIELRVLAHITGDQN 686

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           + + F N  DIH   A  +FG++    V P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 687 MQRAFLNGEDIHAETARAVFGLDNNAPVDPLMRRTAKAVNFGIVYGISDYGLSNNLGISR 746

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +EA  +I+ YF  FP IHE++ K K    + GYVETI  RR +  EI S   ++R+  ER
Sbjct: 747 AEAKRFIETYFKEFPQIHEWMTKIKAQAHEQGYVETIAKRRRYLPEIKSKNFNLRSFAER 806

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AMI V  +L+D++L   +LLQ+HDEL+FE PE+EI T   I+ 
Sbjct: 807 TAMNSPIQGSAADIIKIAMIKVADALKDNQLQANILLQVHDELIFEAPEDEIETLRDIVT 866

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             M+ A    + L VP++V+    N W + 
Sbjct: 867 RVMDSA----VALDVPMQVDSHYGNTWYDA 892


>gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
 gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
          Length = 880

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/991 (31%), Positives = 485/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   Q  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLARYEA 116

Query: 118 DDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAAPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+                          +I +K   +
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVT-------------------------KIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +LEY     L                ++ L         +       +    +++   T
Sbjct: 212 LLLEYGSLENLY-------------ENIDQLKASKMKENLIND-----KDKAFLSKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E        +   Q        +++ + Q P ++ 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQVEALSKFYDEMGFKQLK------AQLGTGQDPVEVK 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K+++   +  +  +                     F       +    + + +A 
Sbjct: 304 PIEFTKVTEVTADMLAPEQF--------------------FYFEILGDNYHKEEIVGLAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                    S ++     DL          +  L ++ L+               +++K 
Sbjct: 344 -------GDSRQIYVGTSDL---------LQQPLFQDFLT---------KIALKTYDLKR 378

Query: 472 DKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPVASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      ++L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EKEQLFEHLARKVQILLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   Q++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IKLAVPLVADENAGQTWYEA 879


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 455/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 27  LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 82

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 83  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 142

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ + P +   
Sbjct: 143 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 202

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 203 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 261

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                             +D  A     
Sbjct: 262 RNRKLNALVRDLDLDVTLAELARHP-------------------------WDPKATRAVF 296

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 297 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 331

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++    +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 332 --------TVLEPGTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 375

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K  H+ K     L   G 
Sbjct: 376 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKAMHSAKGPVEALAERGW 421

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E+ +       +D   D   + 
Sbjct: 422 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEV-EDNSDQAMLDFGEDHFAE- 479

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI  D D+ + + +
Sbjct: 480 -SMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAADMDIFEGLRS 538

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   EE  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 539 EFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 598

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 599 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 656

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 657 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 716

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 717 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 776

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 777 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 836

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 837 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 892

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 893 VPLTVSIGVGRSWFDA 908


>gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
 gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
          Length = 853

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/974 (32%), Positives = 501/974 (51%), Gaps = 127/974 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++    +VD   F++RA+YA P LS  ++  PV  + GF N+L K L        A +
Sbjct: 1   MMEKKSFVIVDAYGFLFRAYYALPGLSTSYN-FPVGGVYGFINILLKHLS----FHDADY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD  +  FR+ +Y +YK NRPK PE L  Q   +R A +AF I + E+  +EADD+
Sbjct: 56  LVVVFDSGSKNFRHTMYSEYKTNRPKAPEDLSLQCAPLREAVEAFNIVSEEVLNYEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT           V I+S DKDL+QL++    +YD +K   +  E+V++K+G+  +K++
Sbjct: 116 IATLCTKYASSNVGVRILSADKDLLQLLNDNVQVYDPIKSRYLTNEYVLEKFGVSSDKLL 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              ALTGD+ DNIPG+P IG KTAA L+ E+G+L+N+L +  ++ QK             
Sbjct: 176 DAMALTGDASDNIPGVPSIGVKTAAKLINEFGSLDNVLNSVEQVAQK------------- 222

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                         +    L       +++R   +   D     
Sbjct: 223 ------------------------------KCRDMLTEYADRAILSRDLISLCHD----- 247

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             V      E     +   +     ++  + +SL  + +K            E ++K ++
Sbjct: 248 --VEVEGDLEKYAKRVPDPVKLMAFLEKYELTSLEGKVAKYCKMVAAPIQSSEVVKKENE 305

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             I+             ++++++ +  G                  + + I        T
Sbjct: 306 KCIDKL-----------EEFLEQCQRSG-----------------LLGLYIEVEQGFIST 337

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            F         +V + +         ++ ++ +     ++  LK+ ++ K          
Sbjct: 338 IFAACDETRSFTVSSPEK-------VQKFVAAVTPILHSDSVLKVVYDAKSMMQFFP--- 387

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
             +R F+DIM+MSY LD+G   H   S++Q+ L                           
Sbjct: 388 -ELRAFDDIMIMSYSLDTGHHDHGFDSMSQRHLGQI------------------------ 422

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             I N  ++++L  ++  KL   KL  VY  L++P++ V+ ++E TGI+ID +LLKQ+S 
Sbjct: 423 FGITNGCILIRLHRVIMRKLFSAKLYTVYYTLERPLVPVIYELEKTGIKIDTELLKQLSD 482

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E S ++ +LEE I+ L+G KFN++S +QLG +LF  ++     K  +G + T A+ L  +
Sbjct: 483 EFSLSISNLEEEIFGLAGCKFNIASSQQLGKVLFEHMRIGGAKKMPSGSYCTNAEVLTAL 542

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                 +   IL+WR  +K+KSTY D+L   ++  T RVHT YS+ +T TGRL+S  PNL
Sbjct: 543 ALDGVEVADKILKWRHFTKLKSTYTDALVRQVDANTGRVHTKYSMTATATGRLSSSNPNL 602

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI++  G+KIR AFI+    KLI+ADYSQ+EL+ILAHIA +    Q F   LDIH +
Sbjct: 603 QNIPIRSKDGEKIRSAFIAEKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVV 662

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A +IFG    ++  ++RR AK+INF IIYG+  + LA  + I R EA++Y+++YF  +P
Sbjct: 663 TAQQIFGEYY-EIDYELRRRAKSINFGIIYGMGSYGLARNIGISRREASEYVEQYFQYYP 721

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I  Y+E TK + +++GY  T FGR+   + INSPK ++ ++ ERAAINAPIQG+AADI 
Sbjct: 722 EIKRYMETTKAYAKKHGYTITAFGRKCFIEGINSPKRALSSVAERAAINAPIQGTAADIV 781

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AM+ +   L        MLLQ+HDEL+ EVPEE + + ++++   ME A +      +
Sbjct: 782 KKAMVRLQDRLT----QGTMLLQVHDELLVEVPEEHVLSVARLMKEVMESAVV----FSL 833

Query: 961 PLKVNIKVSNNWQE 974
           PL VNI V +NW +
Sbjct: 834 PLDVNISVGDNWGD 847


>gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
          Length = 925

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/1002 (27%), Positives = 463/1002 (46%), Gaps = 117/1002 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L L+DG S  +RAFYA P        G   NA+ GF +ML  LL+  +     +H A
Sbjct: 11  KKKLLLLDGHSLAFRAFYALPADKFTDSSGQHTNAVYGFISMLVTLLEQEK----PTHSA 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR+E + DYKA RP+ P     Q+ L+R A + FGI  ++ + +EADD+IA
Sbjct: 67  AAFDLAGPTFRSEKFADYKAQRPETPPEFKGQIELIRQALETFGITTVDYKRYEADDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEK 178
           T      ++GF   I + D+D +QLV+    +  T++      +   E V +K+G+ P +
Sbjct: 127 TLATQGHEQGFDTYICTGDRDSLQLVTDDVTVLYTLRGVSNLARFTPEAVEEKYGVTPTQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL GD+ DN+PG+PG+G KTA   + +YG+L N++ N   I   K  + +     
Sbjct: 187 YPDLAALRGDTSDNMPGVPGVGPKTAQKWINKYGSLSNLIDNIDDI-GGKVGDAL----- 240

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                      R D+   I    L                   T+++  +      +   
Sbjct: 241 -----------RRDIDTVIQAREL-------------------TEMVRDLPIKCSPEDCE 270

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           I P         N       ++     ++   FS +  Q    ++    +++  ER+   
Sbjct: 271 IRPSAR------NDVNDFFDDVQFGMNLRERVFSVIPTQGGSSDAGNHRERVSYERVGLQ 324

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                             ++ W+++      A    +   +    S P   A++    K 
Sbjct: 325 K---------------GKVRHWLEEATDHTPAGIAALGSKL---PSSPNMKALAITQGKQ 366

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                +                     T +    LK++ ++     + H+ K    +L  
Sbjct: 367 TAIINMS------------------RTTDDDRDALKEWLQDPDHPIVVHDGKGLLHMLSS 408

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---------TRKEILKSRKSSI 528
            G++      D  L SY++     S D+ S+ ++ L             +E    R+ S+
Sbjct: 409 EGLTATNIEHDTRLASYLIHPDFGSFDLESVVRRRLGRDLYDSDVVSWEEEHRSGRQMSL 468

Query: 529 PIDKISDSQV------------QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            +  +S                     +++   L+L   L  KL    L  +YE L+ P+
Sbjct: 469 DVGDLSSDGDDDRSVAGISWPEWAKLADHAEAPLELAEELAKKLDKAGLYSIYENLEIPL 528

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFT 635
           + ++  ME  GI+++++ +  +    ++ L    E    L      NL SPKQL ++LF 
Sbjct: 529 VPILFGMERAGIKVNRERMTALRDSTAEKLAKEVEEARALVDMPKLNLGSPKQLQEVLFD 588

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL+     KTKTG                +P + ++L  R+  K  ST  D L   I   
Sbjct: 589 KLELSKTKKTKTGYSTAAKAIERLAEKHPHPFLDHLLAHREYQKRVSTL-DGLIKAIASD 647

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIE 754
             R+HT ++  +T TGRL+S +PNLQNIP++T+ G++IR AF+     + L++ADYSQIE
Sbjct: 648 G-RIHTTFNQTATATGRLSSTDPNLQNIPVRTEEGRQIRAAFVPGEGYEALLTADYSQIE 706

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           +R++AH ++   L + + +  D+H  V +++F V + +V+P++RR  K +++ ++YG+S 
Sbjct: 707 MRVMAHFSQDRGLIEAYRSGEDLHNFVGSQVFDVPVNEVTPELRRRVKALSYGLVYGLSE 766

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           + L+ QL I   EA   + +YF RF G+  Y+ +  +  R++ Y  T+ GRR +  ++ S
Sbjct: 767 YGLSQQLDISVREAKKIMVKYFERFGGVRRYLNEVVDRARKDEYTSTMLGRRRYLSDLAS 826

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                R   ERAA+NAPIQG+AADI + AMI V  +L+  KLA+++LLQ+HDEL  EV  
Sbjct: 827 LNRQARENAERAALNAPIQGTAADIIKVAMIRVDAALKKEKLASRVLLQVHDELDVEVAN 886

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            E+     II   M++A    I L VPL+V + V  +W E  
Sbjct: 887 GELEQVRGIIQREMDEA----IELAVPLEVGMAVGADWNEAG 924


>gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 882

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/981 (28%), Positives = 469/981 (47%), Gaps = 117/981 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  L L+DG S  +RAFYA P+ +     G   NA+ GF +ML  ++   R ++    
Sbjct: 6   SNKTRLLLIDGHSMAFRAFYALPVENFSTSGGQHTNAVYGFLSMLSNIVSEERPDA---- 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR E++PDYKA R   PE    Q+ ++R   +  GI  +  + +EADDI
Sbjct: 62  IAVAFDVGRKTFRTEMFPDYKAQREAAPEEFKGQVDIIRDTLETLGITTLSRENYEADDI 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           +AT    A  + +   I++ D+D +QLV+ +T +   +K      +   E V  K+G+ P
Sbjct: 122 LATLATQA--QDYETLIVTGDRDYLQLVTDSTTVLYPMKGVSTLHRFTPEAVEDKYGLTP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIP +G KTA   + +YG+L                 +++E+
Sbjct: 180 AQYPDFAALRGDPSDNLPGIPKVGEKTATKWIVKYGDL----------------ASLVEH 223

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           AE                              G      ++ ++  + + ++ T  D D 
Sbjct: 224 AEEI------------------------NGVVGNNFRERIEQVQMNRKLTQMITDMDLDV 259

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +    ++   +      E E   +   +           +      +P         
Sbjct: 260 GPDDLAFREVKVADVAAKFDELEFGTNLRDRVLAAIPNDGAEAAEQVADSPD-------- 311

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         +  T D     + L      +  +  +          AIA      
Sbjct: 312 --------------VELTIDDASLSEWLPNREHVAVYVQGEGT-PGQGDASAIAF----- 351

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                       +D + H  Q   G+ +  +E    L ++ E+    K  H  K    +L
Sbjct: 352 ------------VDRNHHGLQVELGELSADEE--KVLVQWLESPA-PKYFHAAKAAFHML 396

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              GI + G   D  L +Y+L  G+ +++++ + Q+ L  +    L +    + +   S 
Sbjct: 397 AGRGIELDGLAHDTALAAYILRPGQRTYELSDVYQRHLQKS----LGAATEQMSLLDSSS 452

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  ++ +  I++L   L  +L       +Y  L+ P++ ++++ME TGI +D D+L
Sbjct: 453 ------LVDQAAAIMELAEKLTAELQDIDSFELYTDLELPLVTILARMEATGIAVDVDIL 506

Query: 596 KQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           +       + +   E +  +L+G EK NL+SPKQL  +LF     P   KTKTG + T A
Sbjct: 507 ETQKDAFVEQVAEQERSARELAGDEKLNLNSPKQLQKVLFETFDMPKTKKTKTG-YSTAA 565

Query: 655 QDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +++EQ+     +P + ++L  R+  K+K+T  + L   +     R+HT ++   T TGRL
Sbjct: 566 KEIEQLAIKHPHPFLDHLLAHREYQKMKTTL-EGLIKTVQPDG-RIHTTFNQTVTSTGRL 623

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIP++T+ G++IR AFI     ++L++ADYSQIE+R++AH++    L + ++
Sbjct: 624 SSTEPNLQNIPVRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYK 683

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA   +
Sbjct: 684 AGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIM 743

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RF G+ +Y++      R++GY  T+FGRR +  E+NS     R   ERAA+NAPI
Sbjct: 744 ESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPI 803

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI V ++L D  + +++LLQ+HDELV EV   E     +I+   M+ A 
Sbjct: 804 QGTAADIIKVAMIRVDRALRD--MKSRVLLQVHDELVVEVAPGEADQVREILEREMDSA- 860

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
              I L VPL+V+     +W 
Sbjct: 861 ---IELNVPLEVSAGAGTDWD 878


>gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
 gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
          Length = 895

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/980 (27%), Positives = 446/980 (45%), Gaps = 100/980 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            + L L+DG S  YRAF+A P+ +     G   NA+ GF +ML  +L++       +H A
Sbjct: 6   RDRLLLLDGHSLAYRAFFALPVENFSTVTGQNTNAVYGFTSMLVNVLRDE----TPTHVA 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E Y +YKA R K P+    QLPL++       I  + + G+EADDIIA
Sbjct: 62  VAFDLSRQTFRLEEYSEYKAKRNKTPDEFKSQLPLIQRLLDVLHIRHLSVAGYEADDIIA 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEK 178
           T      + G  V I++ D+D +QLV+ ++ +   ++      ++  E V  K+G+PP +
Sbjct: 122 TLVTQGLEAGMEVLILTGDRDSLQLVTESSTVLYPMRGVSDLARMTPEAVETKYGVPPHR 181

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G+  DN+PGIPG+G KTAA  +       N               N++ +A+
Sbjct: 182 YPELAALVGEDSDNLPGIPGVGPKTAAKWI-------NTYDGLD---------NVITHAD 225

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                                     +   G  L + L  +   + +N +      +   
Sbjct: 226 QI------------------------KGKAGDNLRAHLGDVMRNRRLNALVRDLPLEVGP 261

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +   ++ +      +  E E   +   + +   +  D      S    +          
Sbjct: 262 TDLGRVEWDRAAALELLDELEFRGEIRTRITDVLAPEDDVPVDESGFALEG--------- 312

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                                  + L      +F     T       P+ + +       
Sbjct: 313 -----------------------ETLAPGAVGAFLAELGTT------PVGLHVRGAWGSG 343

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                        +        G    T E  + L  +  +    KI H+ K  +L +  
Sbjct: 344 T----GRVDGFGFATQERAAYAGVEGFTPEDEAALAGWLADATKPKIMHDAKGPELAIDA 399

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK-EILKSRKSSIPIDKISDS 536
           +G S+RG   D  L +Y++   + S+D+A +  ++L    K E    ++S    D++   
Sbjct: 400 HGWSLRGLVTDTALSAYIVAPDQRSYDLADLTLRYLKRELKQEDDGGQESLFGDDEVGGD 459

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            V   ++  +  +L L   L   +       +   ++ P++ ++++ME TGI +D + L 
Sbjct: 460 GVATTSMLYARAVLDLAAELDSAVEAAGGDRLLSEVELPLLHLLARMEKTGIAVDTEHLD 519

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +    +  +    +  Y + G++ NL SPKQL  +LF +L  P   +TKTG        
Sbjct: 520 ALERHFAGQMKQAADEAYGVIGKEINLGSPKQLQVVLFDELDMPKTKRTKTGWTTDADAL 579

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            +     ++P +  +L  R +++++ T  + L   +     R+HT ++     TGRL+S 
Sbjct: 580 QQLYVKTEHPFLLALLRHRDVTRLRVT-IEGLLKTVQDDG-RIHTTFNQTIAATGRLSST 637

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIP++T+ G+ IR+ F+     + L++ADYSQIE+RI+AH+++   L + F +  
Sbjct: 638 EPNLQNIPVRTEEGRGIRKGFVVGGGFESLMTADYSQIEMRIMAHLSEDELLIEAFRSGR 697

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D H + AA +FGV+ + VS + R   K +N+ + YG+S F L+ QL I  SEA   ++ Y
Sbjct: 698 DFHSITAARVFGVDPDAVSVEQRAKIKAMNYGLAYGLSAFGLSQQLGIEPSEARGLMEEY 757

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  F GI +Y+       R+ GY ETI GRR +  ++ S     R   ER A+NAPIQGS
Sbjct: 758 FETFGGIRDYLRSLVEEARRTGYTETIMGRRRYLPDLLSDNRQRRETAERMALNAPIQGS 817

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AM+ V  ++++  L+++MLLQ+HDELVFEV   E      ++   M  A    
Sbjct: 818 AADLIKVAMLRVQAAIDEADLSSRMLLQVHDELVFEVAPGEREALESLVRAQMGSAA--- 874

Query: 956 INLRVPLKVNIKVSNNWQEE 975
            +L VPL V++    +W E 
Sbjct: 875 -DLNVPLDVSVGTGLSWHEA 893


>gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424]
 gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424]
          Length = 873

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/981 (31%), Positives = 497/981 (50%), Gaps = 122/981 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG+S  YRAFYA P L  K  GL  N++ GF  ML ++L++ + +    +  V 
Sbjct: 2   DKIILLDGNSLSYRAFYAMPALQNKS-GLYTNSVYGFTLMLERMLEDIKPK----YALVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y DYK  R K P  L+ Q   VR    ++GI   E   +EADDII +Y
Sbjct: 57  FDKGKQTFRHKTYQDYKGTRDKTPSELVEQFGYVRELLDSYGIKYEEHFDYEADDIIGSY 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
             +AEK G  V IIS DKDL QL S    +Y T +     +    E + +K+G+ PE+++
Sbjct: 117 AKLAEKAGLEVIIISGDKDLTQLASDNITIYYTRRGVTEVDHYTPEFINEKYGLSPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+ GIG KTA  LL EY  +EN+L N   I  KK +E         
Sbjct: 177 DMKGLMGDKSDNIPGVAGIGEKTAIKLLAEYKTVENVLDNIDNISGKKLKE--------- 227

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               +L   + D  ++               L +                        +E
Sbjct: 228 ----RLAEGKEDALLS-------------KELATIFTE------------------VPVE 252

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             + D+  +EN+    E         +  +F S   + ++ N      K   E       
Sbjct: 253 NKLEDLTFSENRSKKKE-------LFEKLEFVSFLKKLAENNDVDVDGKEEKEL------ 299

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                    +I+N  +  +      +  ++S  I   T D  +S  + IA+   +     
Sbjct: 300 ---------EIINADEKTEL-----SFENSSLHIECFTEDYHNSDVVNIAVYKDENVYIF 345

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           S               +D+  +N        +++ + E++   K+ ++ K    +  R G
Sbjct: 346 S---------------EDNFFEN-------KFVRNYLESDA-EKVVYDYKKILYIAKRNG 382

Query: 481 I-SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSR-KSSIPIDKIS 534
           I  + G   D+ + SY+LD    + ++  I    L     + +EI     K ++P ++I 
Sbjct: 383 ISDIAGNVFDVKIASYLLDVTVKT-ELDKIVFNTLGNIIKSEEEIYGKGVKRTLPTNEI- 440

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              +  +  +    I  L  +   +L  E +  +Y+ ++  +  V++ ME  GI + +  
Sbjct: 441 ---LYPYLAQVVKSIFDLKEIQSARLKEENMDSLYKNIEVKVARVLANMEYEGIHVSKKA 497

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +S E+ + +  LE +I+ L+G +FN++SPKQLG +LF  L  P   KTKTG   +T+
Sbjct: 498 LEDMSDELDERIKILEASIHTLAGSEFNIASPKQLGIVLFEDLGLPPVKKTKTGY--STS 555

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            ++ +     + II  I+E+R L+K+ STYA  L   I ++ + +HT Y    T TGRL+
Sbjct: 556 VEVLEQLQHSHEIIPLIMEYRVLTKLNSTYAKGLVKDITRKGK-IHTRYEQTLTQTGRLS 614

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S+ PNLQNIP + + G+KIR+AFI +   + ++S DYSQIELR+LAH+A+   +   F +
Sbjct: 615 SVNPNLQNIPTRIEEGKKIRKAFIPASDDRVILSIDYSQIELRVLAHMAQDKGMIDAFTH 674

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A+E+ GV++++V+P MRR AK +NF I+YGIS F L+  L I R  A ++I 
Sbjct: 675 DLDIHTKTASEVNGVSLDEVTPTMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFID 734

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +Y   F G+++Y+     F +++GYVET++ RR    EIN+    + ++N R A+N PIQ
Sbjct: 735 KYLETFSGVNKYMTDIVEFAKEHGYVETLYNRRRALPEINAKNKIVASLNARLAMNTPIQ 794

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI+    +E  K+  K+LLQ+HDEL+F+V ++ +   +  +V  ME+A  
Sbjct: 795 GTAADIIKLAMINAFDYIEKTKVDAKLLLQVHDELIFDVNKDVVDEFTIEMVKIMEEA-- 852

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             + L V LK      ++W +
Sbjct: 853 --VELDVKLKAEASSGSSWYD 871


>gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 871

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/990 (29%), Positives = 476/990 (48%), Gaps = 139/990 (14%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              + L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L   + E    +  V
Sbjct: 2   RKKIVLIDGHSILNRAFYGVPDLTT-PEGLHTNAVYGFLNIMFKILDEEKPE----YLTV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+E++ +YK  R  + E L  Q+P+++   +A  I  IE  G EADD++ T
Sbjct: 57  TFDVHAPTFRHEMFSEYKGTRKPMAEELRQQVPVIKEVLEAMNISTIEKAGLEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
            + + E+ G  V+IIS D+D +QL +    +     +      E      V++++ + P 
Sbjct: 117 LSRMCEESGMDVSIISGDRDTLQLATEHVKIRIPKTKQGKTEIENYYAADVVERYKVTPR 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY- 236
           + + ++AL GDS DNI   PG+                        I +K   + I+EY 
Sbjct: 177 EFIDVKALMGDSADNI---PGV----------------------PGIGEKTATKIIMEYQ 211

Query: 237 -AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A                         +   PR    ++       +++V  T    
Sbjct: 212 TIENAY--------------------AHASELKPPRASKNIQEFWEQAKMSKVLAT---- 247

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                               IET  D +  I+ + + +   + +    E+   K  L R 
Sbjct: 248 --------------------IETHADFEFDIEKAHYENPYTEEAYKIFERLRFKNMLGRF 287

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD--AFHSKPIA---IA 410
              ++       + ++   ++I++     E        +  D  +     + P     IA
Sbjct: 288 SIETKENKIEKIFREVTEKEEIERIFAMAEKAQCVGVALSKDEGNVLPLFAHPSGFGRIA 347

Query: 411 ISTLDQ-----KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
           I+  ++       D S  +E +F  LS    + S       KEIL Y+K   ++      
Sbjct: 348 IAWSEKDVVTIPCDLSTDMEFLFAKLSHVAEKVSCFSVCGLKEILPYIKNVKQSSA---- 403

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
                                 D+++ +Y+L+  +S +    +A+++L      I    +
Sbjct: 404 ---------------------FDVIVAAYLLNPLKSDYTYEDVAEQYLG-----IAGGIQ 437

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           + + +               +        +L  KL   ++  ++  ++ P++  + +ME 
Sbjct: 438 AELNV----------KCCYEAYTAFAAASVLDNKLKEAEMDRLFYEIEMPLVFTLYEMES 487

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G++++ + LK    ++ + ++ LE  IY+++GE+FN++SPKQLG ILF KL  P   KT
Sbjct: 488 AGVKVEAEALKLYGDQLGEQIIQLEHQIYEMAGEEFNINSPKQLGVILFEKLNMPHAKKT 547

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG   +TA D+ +    + PI+  ILE+RQL+K+KSTYAD L   I     R+H  ++ 
Sbjct: 548 KTGY--STAADVLEKLAEEYPIVSKILEYRQLAKLKSTYADGLAVFIGDDG-RIHGKFNQ 604

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S EPNLQNIP++ +LG+ IR+ F+       + ADYSQIELR+LAH +   
Sbjct: 605 TVTATGRLSSTEPNLQNIPVRMELGRMIRKVFVPKEDCVFVDADYSQIELRVLAHCSGDE 664

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L + +  + DIHRM A+++F    ++V+   RR+AK +NF I+YGIS F L+  L I R
Sbjct: 665 QLIKAYREATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGIVYGISSFGLSMDLSITR 724

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EAA+YI+ YF  +PG+ ++++ +    ++ GY  T+FGRR    E+ S     RN  ER
Sbjct: 725 KEAAEYIEHYFETYPGVKKFLDDSVENAKEKGYAVTLFGRRRPVPELKSSNFMQRNFGER 784

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+NAPIQG+AADI + AMI VHK L+   + ++M+LQ+HDEL+ E    E+    +I+ 
Sbjct: 785 VAMNAPIQGTAADIMKIAMIDVHKELKKRNMKSRMILQVHDELLIEAECSEVDEVKEILR 844

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME A    + L VPL V++    NW E 
Sbjct: 845 DKMENA----VKLSVPLIVDMHTGKNWYEA 870


>gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/976 (28%), Positives = 455/976 (46%), Gaps = 101/976 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L ++DG S  +RAFYA P+ +     G   NA+ GF  ML  LL+N +     +H AV +
Sbjct: 9   LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEK----PTHVAVAW 64

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR   Y +YKA R  IP     Q+ L++    A  I  +  + +EADDI+AT +
Sbjct: 65  DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EGF   ++S D+D MQLV+    +    K      ++  E V +K+ + P +   
Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 184

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+S D++ G+PG+G KTA   L  Y  LEN++  A  +K  K  ++  ++ +   
Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKG-KAGQSFRDHLDDVI 243

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL  L  D+ + + L  L                             +D  A     
Sbjct: 244 RNRKLNALVRDLDLDVTLAELARHP-------------------------WDPKATRAVF 278

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L+  T  ++  A+ TE D D   +      +S                          
Sbjct: 279 DTLEFRTLWDRVRALATESDADGVDEVDDTLEISG------------------------- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++    +  W+    T G     + T +  +      A+A+  +D      
Sbjct: 314 --------TVLEPGTLNDWLS--TTAGRIGVDV-TGSWGSGSGDVEAVALGGVDG----- 357

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                ++ D +  + +D                 +  ++   K  H+ K     L   G 
Sbjct: 358 ---NAVWFDAAELSPEDE-----------DVFAAWLADKDRPKAMHSAKGPVEALAERGW 403

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  L SY+L   R +H      +  L+    E+ +       +D   D   + 
Sbjct: 404 EVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEV-EDNSDQAMLDFGEDHFAE- 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            ++E +  + +L  ++  ++       +   ++  +   +  ME  GI  D D+ + + +
Sbjct: 462 -SMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAADMDIFEGLRS 520

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + +   EE  ++ +GEK NLSSPKQL  +LF KL  P   +TK+G            
Sbjct: 521 EFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGLY 580

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P + ++LE R   K++ T  D L   I     RVHT Y     +TGRL+S +PNL
Sbjct: 581 ETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEIRDDG-RVHTTYMQTVAVTGRLSSKDPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP++T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L   F++  D H 
Sbjct: 639 QNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHT 698

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+ +FGV  E VS   R   K +N+ + YG+S + L+ QL++   EA + +  YF RF
Sbjct: 699 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMADYFSRF 758

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +HEY+E+  +  R+ GY ET+ GRR +  ++ S     R++ ERAA+NAPIQGSAAD+
Sbjct: 759 GKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAADL 818

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  + L +  L +++LLQ+HDEL+ EV + E     +I+ ++M  A     +L 
Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAM----DLS 874

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V+I V  +W + 
Sbjct: 875 VPLTVSIGVGRSWFDA 890


>gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
 gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
          Length = 907

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/988 (30%), Positives = 489/988 (49%), Gaps = 97/988 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+K     L+D S+ +YRA++A      K++  P  A+ GF N L  +++    +    +
Sbjct: 1   MKKA---VLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFTNTLLSIIKEFSPD----Y 51

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
               FD    +  R+EIY +YKA R  +PE LL Q+P +      F I   +I G+EADD
Sbjct: 52  IGAAFDVKRASLKRSEIYSEYKAQRDAVPEDLLLQIPRIEEVLDGFNINRFKIDGYEADD 111

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-------IEHVIKKW 172
           ++ T +     EG  V +++ DKDL Q++     +    K E  D        E V++  
Sbjct: 112 VMGTLSQKLSNEGIEVIVVTGDKDLAQILDKNVKIALLGKGEGGDKFKILETDEDVVEYL 171

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QK 227
           G+  + +     L GDS D IPG+  IG K A  +L++YGNLE +  N  ++       K
Sbjct: 172 GVTSKMIPDFFGLIGDSSDGIPGVRKIGPKKAVPMLEKYGNLEGVYENIDKLTEIPGIGK 231

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
               N+ E  E A +SRKL  +  D+P+   ++ L     +  +L+   K LEF  L+ +
Sbjct: 232 SLIINMKEDKEIAFISRKLATIEKDIPLECKIDDLKYS-IDNKKLLDLFKTLEFRVLVKK 290

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +                     ++  +++E +    T+++   FS+ S Q ++       
Sbjct: 291 MGL-------------------DSPALSVEEKAPEPTSLQMGLFSTPSVQENES------ 325

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                       +      ++T + + +  +Q+  KL      +F               
Sbjct: 326 -----------VEPVAKQRNFTVVDDEEKFKQFSDKLAGEKRLAFFYS------------ 362

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
               +    KDD  F +      L                  L  +K+FF N   + I +
Sbjct: 363 GTGFAVSSLKDD--FYIPLGHTPLFHKNLD------------LDKVKEFFRNSDSIFITY 408

Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
           N K     L   GI ++  +  ++++Y L S ++   +    ++          +     
Sbjct: 409 NFKP----LLNEGIKIKNMDMDLMIAYHLISSQTKEGVEIPLEQLSGIDIAPYSEKFGKE 464

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            P   +S  +  +  +E S  I++ + +   ++  + LL V +  + P+I V+S ME  G
Sbjct: 465 AP-GNLSTEEYGKFLVERSKGIMETYGIAMEEIKGKNLLEVLKETEMPLIKVLSAMERKG 523

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I+ID     +   E+   L +L++ I++++GE+FNL+SPKQL ++LF KL      KTKT
Sbjct: 524 IKIDPVYFAKYEKELEILLNNLQKKIFEIAGEEFNLNSPKQLAEVLFFKLNLDPVKKTKT 583

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   T  + LE++      I   ILE+R+ +K+K+TY D+LP   + R  R+HT ++   
Sbjct: 584 G-LSTDEEVLEKLKNDGVEIASYILEYRKYAKLKNTYVDALPKLADSRD-RLHTTFNQIG 641

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIP+KTD G KIR+ FI+     L+  DYSQIELR+LA ++K   L
Sbjct: 642 TTTGRLSSSNPNLQNIPVKTDEGMKIRQGFIADNGNVLMGIDYSQIELRVLAELSKDENL 701

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
              ++N+ D+HR+ A +IF + + E+VS + R  AKTINFSIIYG + F L+ +L I + 
Sbjct: 702 IAAYKNNEDLHRVTAKKIFELEDGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGITQK 761

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA DYI RYF ++P + ++ +    +  +NGY ET FGRR   + I S   +I+N  ER 
Sbjct: 762 EATDYINRYFEQYPKVKDFEKSIIAYAEKNGYTETYFGRRRIIEGILSKNKNIKNQAERM 821

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N+ IQG+AA+I ++ MI + K +E+ +    +LLQ+HDEL+FE+ EE++      I +
Sbjct: 822 AVNSVIQGTAAEILKKVMIEIFKVIENKE-DISLLLQVHDELIFEIKEEKVEEYRTTIEN 880

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M  +        V L +N  +  NW E
Sbjct: 881 IMRNSVKFD---DVVLDINTNIGKNWAE 905


>gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
 gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
          Length = 865

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/981 (31%), Positives = 474/981 (48%), Gaps = 132/981 (13%)

Query: 4   ENHLFLVDGSSFIYRAFYATP----LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
              LFL+D   FI+RA++A         R   G    A+  F NML KL     K+    
Sbjct: 7   RQKLFLIDTFGFIFRAYHARARTGAPPMRTSTGFSTEAVYIFNNMLRKL----SKQHDPP 62

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + A IF+    T R + + +YKANR + P  LL Q+P VR   +A  IP +E  GFEADD
Sbjct: 63  YVAAIFESGEATHRVQEFAEYKANRTETPPDLLDQIPFVRRVLEAMRIPILEYPGFEADD 122

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-IDIEHVIKKWGIPPEK 178
           +I T T  AE EG  V I+S+DKD++QLV+    + +  K++K  + E V    G+P   
Sbjct: 123 VIGTITRRAEAEGLDVVIVSSDKDMLQLVTEHVSMLNPAKDDKLYNPEEVKTFMGVP--- 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG-NLENILINASRIKQKKRRENILEYA 237
                                     A LL   G +++NI   A  I  K  ++ +    
Sbjct: 180 ----------------------PVQVADLLALMGDSVDNI-PGAPGIGDKGAKQIL---- 212

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD-- 295
                                 E     +    R     + +    L N V         
Sbjct: 213 ----------------------EKFGSIEAALERAAEVERKVYRESLQNNVDRIRMSKRL 250

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A     V ++      K  A +  + +    K  +F SL  +         P +   ER 
Sbjct: 251 ATISTDVPIEFTLDAVKAQAPDPGLLK-AIYKEMEFHSLLKELG-------PSEDTRER- 301

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                       Y+ I +  ++++W+                        P+A+AI+   
Sbjct: 302 -----------RYSVIGSAGELREWLAGAAGT------------------PVAVAITKST 332

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           + +     +    I L+    +       +T E++  LK + E+   +K+  ++K   L 
Sbjct: 333 EGEFALDMIAADTIGLARKRGE----ACAVTSELIVELKPWLEDAAVVKVACDVKSAVLQ 388

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R GI  RGF  D+M+  ++LD+      + + A + L                     
Sbjct: 389 LARLGIEARGFGHDVMIYGFLLDADPGGCGLENQAHRRL--------------------- 427

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D ++   A +++++ L+L+  L P +    L  +Y+ ++ P+  V+++ME TGI+ID   
Sbjct: 428 DLKLGGAAEQHADITLELYEQLAPAIDGRGLRKLYDEIELPLTRVLARMERTGIRIDGAE 487

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK++S  +   +  L   I+ L+G+ FN+SSP+QLG +LF  L  P+  K   G+  +TA
Sbjct: 488 LKRLSVLMESQISGLTAEIHALAGKPFNISSPQQLGKVLFEDLNLPAPVKYGKGKTISTA 547

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+      ++ I++ +LE+RQL+K+K TY D+LP  I+  T R+HT ++     TGRL+
Sbjct: 548 ADVLDELAAEHEIVRKVLEYRQLTKLKGTYVDALPALIDPATGRLHTSFNQTGAATGRLS 607

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPI+T LG++IR AF+     KL+ ADYSQIELR+LAH++    L Q F   
Sbjct: 608 SSNPNLQNIPIRTSLGREIRAAFVPRDGWKLLVADYSQIELRLLAHMSGDELLVQAFREG 667

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AAE+ GV    V+P+ RR AK +NF I+YGIS F LA QL I R+EA  YIK 
Sbjct: 668 EDIHTRTAAEVMGVPPLMVTPEARRDAKAVNFGIVYGISAFGLAAQLGIGRAEAERYIKN 727

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+ G+  +IE+T   VR+ G  +T+FGR     EIN    + R   ER A+N+P+QG
Sbjct: 728 YFARYVGVKRFIEETIAEVRKTGVTKTLFGRERPIPEINGRNPNARGFAERTAVNSPLQG 787

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ + AM+ +  +L        MLLQ+HDELVFE P EE+   S+++   ME AC  
Sbjct: 788 TAADLIKLAMVRIDAALAAGGFQAAMLLQVHDELVFECPPEELDEVSRMVKREMEGAC-- 845

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L+VPL V++   +NW++ 
Sbjct: 846 --ELKVPLVVDVGSGDNWRDA 864


>gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP]
 gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP]
          Length = 897

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/976 (30%), Positives = 482/976 (49%), Gaps = 89/976 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   L L+DG +  YR+++A P LS    G   +AI GF     +L +    +      
Sbjct: 8   AQPETLVLIDGHALAYRSYFALPPLSN-SGGESTHAIVGFMRQALRLARQKGNQ-----L 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD P  TFR+E Y DYK+ R + P  L PQ+  +R    A G P +E +G+EADD+I
Sbjct: 62  VVVFDPPGGTFRHEQYEDYKSGRAETPSDLPPQIRRIRELVDALGWPRLEEKGYEADDVI 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+ T  A++EG  V I+++D+D  QL++    +           E V+ K+G+  E+ V 
Sbjct: 122 ASLTRRAQREGMEVRILTSDRDAYQLLADDVKVIKN-DNSLFGPEDVLDKYGVTVEQWVD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA--SRIKQKKRRENILEYAET 239
            +ALTGD+ DNIPG  GIG KTA  +LQEYG L+  L  A    ++ K  R+ +L+  + 
Sbjct: 181 FRALTGDASDNIPGAKGIGPKTATKILQEYGTLDAALDAAKAGTLQPKGTRQKLLDSEDA 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            R SR+L  +  D+ +   L        +  RL   L+ LE   L   +A     + A  
Sbjct: 241 VRFSRELSQMVCDLELACELRA-GRGAGDPARLNELLEELELDSLRGDIARLVAGELATG 299

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +    D       G   E      +T +T ++ + + + +                   +
Sbjct: 300 DAAPQDSGGEPPAGTLAEF-----STPETGEWQAPAPEQAG-----------------QA 337

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
            +         +        W                  +D   ++P+           +
Sbjct: 338 TWGYVLSREDDLTAELRGAAW------------------LDGRVARPV-------PALPE 372

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           T    E           +    K    +   + L      +     G   K     L   
Sbjct: 373 TPALFELAAEAAPAAPKKRGKAKEPQPQADETVLTAALAGQELDAAG--AKALATWLSVR 430

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G  +   +D +L++Y+LD   ++  + ++A+++L     E   +R  +I    +     Q
Sbjct: 431 GGDVTPGDDPLLLAYLLDPANTA--MPAVAKRYLDTDWPEDAGTRA-AIAAQLLELLPPQ 487

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
             A                       L +Y  ++KP+  V+++ME  G+++D + L+ +S
Sbjct: 488 LDAAR---------------------LKLYTEVEKPLSGVLARMEARGVRLDSEYLQGLS 526

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
             +++ L  LE  I++ +G +F++ S  QL  +L+ +L   SG KTK    ++TA    +
Sbjct: 527 LALAERLERLEAQIHEAAGREFSIRSRDQLEAVLYDELGLASGKKTKLTGKRSTAMTALE 586

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++PII  ILE+R+L K++ TY D LP  +N RT R+HT ++  +  TGRL+SL PN
Sbjct: 587 PLRDEHPIIPLILEYRELEKLRGTYLDPLPRLVNPRTGRLHTTFAQTAVATGRLSSLNPN 646

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+++ G++IR+ FI+    +L++ADYSQ+ELR++AHIA   P+ + F+   DIHR
Sbjct: 647 LQNIPIRSEEGRQIRKGFIADGGFRLVAADYSQLELRLMAHIAGDEPMQRAFQEGADIHR 706

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AA++ G++   V    RR AKT+NF ++YG+S  RL+ +L IP +EA  +I+ YF  +
Sbjct: 707 RTAAQVLGLDESTVDVNQRRAAKTVNFGVLYGMSAHRLSNELGIPYAEATSFIENYFGIY 766

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           PGI  YIE+T  F RQ+GYVET++GRR +  E+ +   ++R   ER A N PIQG+AADI
Sbjct: 767 PGIQRYIEETLEFGRQHGYVETLYGRRRYVPELKARNRNLREAGERLAYNMPIQGTAADI 826

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+++   L+   L  +MLLQ+HDEL+ E P +     + +    ME      + L 
Sbjct: 827 MKMAMVALEPQLDA--LGARMLLQVHDELLIEAPADRAEEVAALTRQVMEGV----VELN 880

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL V   +S+NW E 
Sbjct: 881 VPLAVEAGISDNWYEA 896


>gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
 gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
          Length = 879

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/993 (31%), Positives = 486/993 (48%), Gaps = 133/993 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DGSS  +RAF+A        R ++GL  NAI GF  ML  LL+  +    
Sbjct: 1   MTNQKKLLLIDGSSVAFRAFFALYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K PE    Q P +R    A GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQFPYIREMLAARGIAYYDLAQYEA 116

Query: 118 DDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE   E + +T++S DKDL+QL    T +  + K     E    +++++K
Sbjct: 117 DDIIGTLAKMAENTSEDYQITVVSGDKDLIQLTDVNTVVEISKKGVAEFEAFTPDYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GD  DNIPG+  IG KT   LL E+G+L                E
Sbjct: 177 MGITPAQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSL----------------E 220

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            I ++ +  + S+                  + E+    +  +FL         ++   T
Sbjct: 221 GIYDHIDEMKKSK------------------MKENLINDKEQAFL---------SKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D  +    P+ + ++ T   G  +E        +   QF +       +  E  PQ   
Sbjct: 254 IDTHS----PIEIGLDDTAFTGPDLEKLAAFYDEMGFVQFKN------ALGGEAIPQDFD 303

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                              +   +  Q       +     F+I+    D +H++PI I  
Sbjct: 304 -------------------VTYAEPSQVTADHFSSDDFFYFEIL---GDNYHTEPI-IGF 340

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG--HNI 469
           +  ++K   +                 ST  + L  E               K    ++ 
Sbjct: 341 AWGNEKQIYA-----------------STDTDLLKSEAFQA--------ALSKAVNIYDF 375

Query: 470 KYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL--KSR 524
           K  K++L   GI +     D  L  Y+L S    +++++IA+ +  L     E++  K  
Sbjct: 376 KRSKVLLSHLGIDLPTANFDARLAKYLL-STVEDNELSTIARLYTDLPLETDEVVYGKGA 434

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K ++P  ++    +  H  +   V+     ++  KL       +   ++ P+ +V+++ME
Sbjct: 435 KRAVPEKEV----LLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKME 490

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
           I GI++    L +++ E    +  L + IY+++GE+FN++SPKQLG ILF K+  P    
Sbjct: 491 IAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEFNINSPKQLGVILFEKMGLPLEYT 550

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            KT    +TA D+ +      PI+  ILE+RQ++K++STY   L ++I +  + +HT Y 
Sbjct: 551 KKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGK-IHTRYV 609

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAK 763
              T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+ 
Sbjct: 610 QDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPSTEDAVLLSSDYSQIELRVLAHISG 669

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
              L   F+   DIH   A  +FG+   E V+P  RR+AK +NF I+YGIS F L+  L 
Sbjct: 670 DEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGISDFGLSNNLG 729

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I R +A +YI  YF R+PGI  Y++      +  GYVET+F RR    +INS   ++RN 
Sbjct: 730 ISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDINSRNFNVRNF 789

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AIN+PIQGSAADI + AMI++ K+L +    TKMLLQ+HDE+V EVP +E+     
Sbjct: 790 AERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMEA 849

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ++  +ME A    + L VPL  +      W E 
Sbjct: 850 LVKETMEAA----VELAVPLIADENDGCTWYEA 878


>gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478]
          Length = 900

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/979 (29%), Positives = 452/979 (46%), Gaps = 101/979 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H A
Sbjct: 10  KPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTHIA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR+E YP+YKANR   P+    Q+ + +    A GI  +   GFEADDIIA
Sbjct: 66  AAFDVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLGALGITVLAEPGFEADDIIA 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AEKEG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P +
Sbjct: 126 TLATQAEKEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPAQ 185

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G                          K   + I EY  
Sbjct: 186 YPDFAALRGDPSDNLPGIPGVGE-------------------------KTATKWIAEYGS 220

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                ++LV     V   +  + L     N  R          T+L+  V      D   
Sbjct: 221 L----QELVDHVDSVRGKVG-DALRAHVANVVRNREL------TELVRDVPLAQTPDTLR 269

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           ++P   D                        +F  L D+     +   P+      ++  
Sbjct: 270 LQPWDRD---------------HIHRLFDDLEFRVLRDRLFDTLAAVEPEVDEGFDVRGG 314

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +            +    + QW+      G      +  T         A+AI+  D   
Sbjct: 315 T------------LQPGTVAQWLAAHAGDGRRCGLTVVGTHLPHGGDTTALAIAAADGDG 362

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                                 G  T+T E  + L  +  +    K  H  K     L  
Sbjct: 363 GY-------------------IGTATVTPEDDAALAAWLADPAKPKALHEAKLAIHDLGG 403

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS--D 535
            G ++ G   D  L +Y++  G+ S  +  ++ ++L    +     ++    +D +   D
Sbjct: 404 RGWTLDGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQLSLLDDMEGVD 463

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            Q  + AI  +  +  L   L  +L       +   ++ P+  V++ ME  GI +D  LL
Sbjct: 464 DQAVQTAILRARAVADLAEALDAELARIDSTALLADMELPVQRVLADMERAGIAVDLRLL 523

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++ ++ +  +    E  Y + G++ NL SPKQL  +LF +L  P   +TKTG       
Sbjct: 524 AELQSQFADQIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADA 583

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                    +P ++++L  R ++++K T  D L N +     R+HT ++     TGRL+S
Sbjct: 584 VQGLFEKTGHPFLQHLLAHRDVTRLKVT-VDGLLNSVAADG-RIHTTFNQTIAATGRLSS 641

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPI+TD G++IR AF+      +L++ADYSQIE+RI+AH++    L + F   
Sbjct: 642 TEPNLQNIPIRTDAGRQIRDAFVVGAGYSELMTADYSQIEMRIMAHLSGDEGLIEAFNTG 701

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+TQL+I   EA   + +
Sbjct: 702 EDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSTQLKISTEEAKVQMDQ 761

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+       R++GY  T+ GRR +  E++S    +R   ERAA+NAPIQG
Sbjct: 762 YFARFGGVRDYLMAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQG 821

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI V K+L +  LA++MLLQ+HDEL+FE+   E      ++   M  A   
Sbjct: 822 SAADIIKVAMIEVDKALTEAGLASRMLLQVHDELLFEIAPGERERVEALVREKMGGA--- 878

Query: 955 KINLRVPLKVNIKVSNNWQ 973
              L VPL+V++    +W 
Sbjct: 879 -YPLDVPLEVSVGFGRSWD 896


>gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 849

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/910 (31%), Positives = 461/910 (50%), Gaps = 72/910 (7%)

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
           ++  YK  R  +PE L  Q+PL++    A G+  +  +G+EADDI+ T    +E  G   
Sbjct: 1   MFEAYKGTRKPMPEELREQVPLIKEMLTAMGVNVVTKEGYEADDILGTLARKSEAAGMDA 60

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
           TI+S D+DL+QL +    +            E    + VI+K+ + P +++ L+AL GDS
Sbjct: 61  TILSGDRDLLQLATDKVMIRLPKTVRGKTTIEDYHAQQVIEKYQVTPPQIIELKALMGDS 120

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DNIPGIPG+G KTA  ++ EYG++EN   +   +K  + RE++ E+ + A++S+ L  +
Sbjct: 121 ADNIPGIPGVGEKTATKIIVEYGSIENAHEHLEELKPNRARESMREHYDMAQMSKALATI 180

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
            TD PI    E   L +          + LEF  L+NR  +     AA  E  +     T
Sbjct: 181 CTDSPIEFSYEKAKLGNLYTKEAFLLCRQLEFKNLLNRFDS-----AAVQEDTLEQEFFT 235

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
                  E    +    KT+  S +++      +      L  E +  +    +  + Y 
Sbjct: 236 CADLAGCEALFAKAEAGKTAGVSLVTENGRVFGAGLA---LNEEEIYYIPVEGMITEGY- 291

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
                        KLE  G       ++T +   S             DD     E    
Sbjct: 292 ----------LCGKLE--GLLHKVSESNTENIMKSN-----------TDDVKKDPENEIS 328

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
           D++   +     K     ++ + LK    ++                           D 
Sbjct: 329 DVNTDGTLKYDKKCVCALDVKALLKHIKSDDPMA----------------------VFDA 366

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLS----YTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +Y+L+  +SS+    +A+++L+      R+E+L  +      ++ S   +   A   
Sbjct: 367 GVAAYLLNPLKSSYTYDDMAKEYLNGRILPAREELLGKKTVEKAWEE-SAEGLAAWACYM 425

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           +   L     +   L    + +VY +++ P+I  +  ME  GI +  + LK    ++S  
Sbjct: 426 AYTALACRKPMCEALRDTGMWNVYTQIELPLIFTLDSMEKWGISVKSEELKSYGEKLSVR 485

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           +  LE+ I+  +GE+FN++SPKQ+G ILF KL    G KTKTG   +TA D+ +    + 
Sbjct: 486 IGELEKQIWQQAGEEFNINSPKQMGVILFEKLGLKGGKKTKTGY--STAADILEKLAPEY 543

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           PI+K+ILE+RQL+K+KSTYAD L   I +   R+H+ ++   T TGR++S EPNLQNIP+
Sbjct: 544 PIVKDILEYRQLAKLKSTYADGLVGEIAEDG-RIHSTFNQTITATGRISSTEPNLQNIPV 602

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           + +LG+ IR+ F+       + ADYSQIELR+LAH++    L Q ++ + DIHR  A+E+
Sbjct: 603 RMELGRLIRKVFVPEEGYVFLDADYSQIELRVLAHMSGDEKLIQAYKEAQDIHRHTASEV 662

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F V  ++V+   RR+AK +NF I+YGIS F L+  L I R EAA+YI+RYF  +P I  +
Sbjct: 663 FHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEYIERYFETYPKIKGF 722

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++      ++ GYV T+FGRR    E+ S     R+  ER A+N+PIQG+AADI + AM 
Sbjct: 723 LDGLVEEGKEKGYVTTMFGRRRPIPELKSGNFMQRSFGERVAMNSPIQGTAADIIKIAMN 782

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V++ L+D  L ++++LQ+HDEL+ E  +EEI   S I+   M+ A      L V L+V+
Sbjct: 783 RVYRRLKDENLKSRLVLQVHDELLIETCKEEIPQVSAILEEEMKGAA----KLSVELEVD 838

Query: 966 IKVSNNWQEE 975
           +   NNW E 
Sbjct: 839 MHQGNNWYEA 848


>gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
 gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
          Length = 873

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/975 (33%), Positives = 499/975 (51%), Gaps = 110/975 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F++R FYA P L  K  G+P   I GF N +  L     KE    +    
Sbjct: 2   PTLTIIDTFGFLFRNFYALPPLKSKK-GIPTGMITGFMNFIASL----GKEFPTDYVVFT 56

Query: 65  FDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            D     TFR EI+ DYKANRP+ PE L  QLP+     +  G   IE+ GFE+DDIIA+
Sbjct: 57  LDSKEKDTFRKEIFKDYKANRPEAPEDLKVQLPIAIGLIKEMGFKMIEMPGFESDDIIAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
               A  +G  V I+S DKD+ QL+      ++D +K+ +I+ E   +K+G+ P+     
Sbjct: 117 LAKKAANDGIKVKIVSHDKDMYQLIDDDKIVIFDPIKKIEINEEKCKEKFGVHPKYFKDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS DNIPG+ GIG KTAA L+ EY NLENI  N  +IK    ++ ++E  E A L
Sbjct: 177 QALVGDSSDNIPGVKGIGVKTAAKLINEYKNLENIYENIDKIKGA-LQKKLIEGKENAFL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV L+TD+   I LE         P +   LK                         
Sbjct: 236 SRELVTLKTDLFENINLEEFKY-----PEINPILK------------------------- 265

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                   +K I ++     D   K   F    + T +I  E                  
Sbjct: 266 ------VADKLIDLDITSVIDRVKKNGLFVKTKEPTKQIEFEAI---------------- 303

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                   + N K++ + + K+E     SF   T +++  + K +  + +  + K     
Sbjct: 304 -------ILENEKELFEIIDKIEDN-IVSFDTETTSLE--NPKIVGFSFAFEENK-AYYV 352

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI- 481
            +   ++ +S         K    K  L  ++K  E      IGHN+K+D  +L  Y I 
Sbjct: 353 PINHFYLGVS---------KQIDEKIALKAIEKILEK---KVIGHNLKFDFKMLKDYKIK 400

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           +   F D M++ +++D   S   + S+A+++L++   +  +    +    +I      ++
Sbjct: 401 TPTPFADTMILGWIIDPD-SPVGLDSLAKRYLNHQNIKYKEIVGKNQNFSEIDIKTAAKY 459

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+L+ +L+ K   E    + E ++ P+I+++  ME  GI++D + L+++  E
Sbjct: 460 ASEDAIITLKLYEVLKEKTWEEVKWDI-ENIEMPLINILIDMEKEGIKVDIEYLEKLQKE 518

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +++ L +L + IY+L+G +FN+ SPKQL  ILF  LK P   KTKTG   +T + +    
Sbjct: 519 LTQKLENLTKEIYNLAGSEFNIKSPKQLSHILFKVLKLPVKKKTKTGY--STDEKVLNSL 576

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINK-RTQRVHTFYSLASTMTGRLASLEPNL 720
              +PII+ +LE+R+  K+ +TY   L  +  K + Q+V+T +    T TGRL+S  PNL
Sbjct: 577 KNTHPIIEKLLEYRKFDKLLTTYIIPLKEYAKKDKNQKVYTNFLQTGTATGRLSSKNPNL 636

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP  T++   IR AFI+   K  IS DYSQIELR+LAH +K   L + F N  DIH  
Sbjct: 637 QNIPTSTEI--NIRNAFITD--KLFISLDYSQIELRLLAHFSKDPHLIEAFLNDKDIHLE 692

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AA+IFG   E  + + R  AK+INF +IYG+ P +L+  + +   EA ++I++YF  F 
Sbjct: 693 TAAKIFG---EDKAKEYRSIAKSINFGLIYGMGPKKLSETINVSTKEAKEFIEKYFENFS 749

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + ++IEKTK   ++ GYVET+F RR  +D  NS  +      ER A+N   QGSAADI 
Sbjct: 750 TVKDFIEKTKVETKEKGYVETLFKRRRFFD-FNSANARTLAAYEREAVNTIFQGSAADII 808

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVP-EEEITTASQIIVHSMEKACLPKINLR 959
           ++AMI +          +KM+LQIHDEL+FE+  ++E     +I    ME A    I L 
Sbjct: 809 KKAMIDIKNKFPS----SKMILQIHDELIFEIDNKDEAYEYKEI----MENA----IKLE 856

Query: 960 VPLKVNIKVSNNWQE 974
           VPLKV I  +  W E
Sbjct: 857 VPLKVGISFAKRWGE 871


>gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 1003

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/1033 (28%), Positives = 467/1033 (45%), Gaps = 88/1033 (8%)

Query: 1    MQKENH-LFLVDGSSFIYRAFYATPLLSRK--------HDGLPVNAIAGFCNMLWKLLQN 51
            M  EN  L L+DG S   R+F+    ++ K         DG    A+  F + L  ++++
Sbjct: 1    MTTENKTLLLIDGHSLALRSFFGIYTMAEKTGQHIFVRSDGQHTEAVHAFLSTLLSIIKD 60

Query: 52   SRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE 111
            ++     SH AV FD P  TFR   Y +YK  R  IPE    Q+ L++    A  IPA+ 
Sbjct: 61   NQ----PSHIAVAFDLPGGTFRTAEYGEYKGGRNAIPEAFNGQIDLIKKMLGALNIPALT 116

Query: 112  IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDI 165
             + +EADDI+AT T    + G+ V I+S D+D+ QLV+    L   V        +++D 
Sbjct: 117  YENYEADDIVATLTRRGTEAGYKVLILSGDRDIFQLVTDDVTLLYPVTTGPSKGIQRMDP 176

Query: 166  EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
              V KK  +PP     L ALTG+  DN+PG+PG+G   AA  L EYG+L+ +L N  +I 
Sbjct: 177  AAVEKKTKVPPHMYPDLAALTGEQADNLPGVPGVGPGFAAKWLGEYGSLQGVLDNRDKIG 236

Query: 226  QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
             KK  E + E  +    +R+L  L  D+ + + LE       +   L +F   +EF  + 
Sbjct: 237  GKK-GEALRENVDNVVRNRRLNQLVNDLDLNVTLEDTAFT-PDLDALNTFFDEVEFRTIR 294

Query: 286  NRVATTYDC---DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
             R A T       A +           E               I TS  +  +D  +   
Sbjct: 295  KRAADTLGPIVRAAGSAGATSSAAEAGEEGAPKKAPTGPVYAPINTSAPTKNADAAAFRA 354

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
                  +      ++ +   +       +         V +     + + K+    + A 
Sbjct: 355  FCSAAAEENYGTDEQGAPIAVPERLEGAVTLYPVTNLPVARPAIGDAPAVKVTKTKIRAA 414

Query: 403  HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               P  + +                   L+  ++       T+  E+ + L  +  +E  
Sbjct: 415  EENPELLGVL------------------LTSKSTSLWIDTRTIDPELDAALAAWLSDEAA 456

Query: 463  LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLD--SGRSSH----DIASIAQKWLSY 515
             KI  ++K  + +L  YG  + G  ED  L SY+       +       +  +A+++L  
Sbjct: 457  RKIVMDLKVQRKLLRAYGYELAGAVEDPALSSYMCGFIPTATRKLFSERMEDLAERYLWI 516

Query: 516  TRKEILKSRKS-----------SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             ++   +               S+P +      +  +  + S +I +L  LL  ++    
Sbjct: 517  PKEPYAQLVFQPEEDEAEPSLFSLPGEAEPVDNL-RYFTQISRIIHELARLLHYEMEEHG 575

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG------ 618
             L VYE ++ P++ V++ ME  GI +   LL ++    S      +E+   + G      
Sbjct: 576  QLKVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQESARAIIGGEVATE 635

Query: 619  ---EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-----NCGDNPIIKN 670
               E  NL+S KQL  +LF  L  P   K K+G         E +            +  
Sbjct: 636  DGEEPLNLASVKQLQTVLFETLGLPHTRKIKSGYSTDAESVTELLSKISPESDGAAFLGA 695

Query: 671  ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
            +  +R   K+  T  + L     +   RVHT +   +  TGRL+S  PNLQNIPI+T+ G
Sbjct: 696  LAAYRDNIKLAQT-VEGLQKAATEDG-RVHTTFQQGAASTGRLSSTAPNLQNIPIRTEEG 753

Query: 731  QKIRRAFISPP-------TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            ++IR AFI  P        + L++ADYSQIE+RI+ H+A    L   +E   D+HR V +
Sbjct: 754  RRIRGAFIVAPEPIDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLHRYVGS 813

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            E+FGV  E V+P+ R   K +++ + YG+S F LA QL I   EA +    YF RF  + 
Sbjct: 814  EVFGVAPEDVTPEQRSKVKAMSYGLAYGLSRFGLAKQLNISSDEAGELRTNYFKRFGRVG 873

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             ++        Q+GY ETIFGRR    +++SP    R   ERAA+NAPIQG+AADI + A
Sbjct: 874  RFLRGVLKQAHQDGYTETIFGRRRVLPDLDSPNRVRREAAERAALNAPIQGTAADIIKIA 933

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            MI++H+ L +  L T+MLLQ+HDE++ EV   E   A +++V  M  A     +LRVPL 
Sbjct: 934  MINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERVLVEEMSGAA----SLRVPLD 989

Query: 964  VNIKVSNNWQEEN 976
            V +    +WQE  
Sbjct: 990  VQVGWGKSWQEAG 1002


>gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
          Length = 908

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/989 (30%), Positives = 487/989 (49%), Gaps = 98/989 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+K     L+D S+ +YRA++A      K++  P  A+ GF N L  +++    +    +
Sbjct: 1   MKKA---VLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFTNTLLSIIKEFSPD----Y 51

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
               FD    +  R+EIY +YKA R  +PE LL Q+P +      F I   +I+G+EADD
Sbjct: 52  IGAAFDVKRASLKRSEIYSEYKAQRDAVPEDLLLQIPRIEELLDGFNINRFKIEGYEADD 111

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-------IEHVIKKW 172
           ++ T +    KEG  V +++ DKDL Q++     +    K E  D        E V++  
Sbjct: 112 VMGTLSQKLSKEGIEVIVVTGDKDLAQILDKNVKIALLGKGEGGDKFKILETDEDVVEYL 171

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QK 227
           G+  + +     L GDS D IPG+  IG K AA +L++YG+LE +  N  ++       K
Sbjct: 172 GVTSKMIPDFFGLIGDSSDGIPGVRKIGPKKAAPMLEKYGDLEGVYENIDKLTEIPGIGK 231

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
               N++E  + A +SRKL  +  D+PI   ++ L     +  +L+   K LEF  L+ +
Sbjct: 232 SLIANMIEDKDIAFMSRKLATIEKDIPIDCTIDDLKYS-VDNKKLLDLFKTLEFRVLVKK 290

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +                          A +     +T ++   FS+   Q      E  P
Sbjct: 291 MGL------------------ESAPAAAEKAPESANTNLQMGLFSTAPVQ------ENEP 326

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
             +  +           + ++T + + +  +Q+  KL      +F               
Sbjct: 327 AAVITK-----------DRNFTVVDDEEKFKQFSDKLAGEKRLAFFYS------------ 363

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
               +    KDD    +      L                   + +K+FF N     I +
Sbjct: 364 GTGFAVSSLKDDFYLPL--GHTPLFHKNLD------------FNKIKEFFRNSDSKFITY 409

Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           N K     L   G+ ++  + D+M+  Y L S ++   +    ++          +    
Sbjct: 410 NFKP----LLNEGVEIKNMDVDLMIA-YHLISSQTKEGVEIPLEQLSGIDIAPYSEKFGK 464

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
             P   +S  +  +   E S  I++ + +   ++  + LL V E+ + P+I V+S ME  
Sbjct: 465 EAP-GNLSTEEYGKFLTERSKGIMETYGIAMEEIKGKDLLEVLEKTEMPLIKVLSAMERK 523

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+ID     +   E+   L  L++ I++++GE+FNL+SPKQL ++LF KL      KTK
Sbjct: 524 GIKIDPVYFAKYEKELEILLSDLQKKIFEIAGEEFNLNSPKQLAEVLFFKLNLDPVKKTK 583

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   T  + LE++      I   ILE+R+ +K+K+TY D+LP  ++ +  R+HT ++  
Sbjct: 584 TG-LSTDEEVLEKLKSDGVEIASYILEYRKYAKLKNTYVDALPKLVDSKD-RLHTTFNQI 641

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S  PNLQNIP+KTD G KIR+ FI+     L+  DYSQIELR+LA ++K   
Sbjct: 642 GTTTGRLSSSNPNLQNIPVKTDEGMKIRQGFIADSGNVLMGIDYSQIELRVLAELSKDEN 701

Query: 767 LYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   ++N+ D+HR+ A +IF +   E+VS + R  AKTINFSIIYG + F L+ +L IP+
Sbjct: 702 LIAAYKNNEDLHRVTAKKIFELGEGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGIPQ 761

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA DYI RYF ++P + ++     ++  +NGY ET FGRR   + I S   +I+N  ER
Sbjct: 762 KEATDYINRYFEQYPRVKDFERSIIDYAEKNGYTETYFGRRRIIEGIISKNKNIKNQAER 821

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+ IQG+AA+I ++ MI + K + D K    +LLQ+HDEL+FE+ EE++     II 
Sbjct: 822 MAVNSVIQGTAAEILKKVMIEIFKVI-DGKEDISLLLQVHDELIFEIKEEKVEEYRTIIE 880

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           + M  +        V L +N  +  NW E
Sbjct: 881 NIMRNSVKFN---DVVLDINTNIGKNWAE 906


>gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 1025

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1020 (27%), Positives = 483/1020 (47%), Gaps = 63/1020 (6%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             ++  L +VDG S  +RAF+A    +     G   N+I GF  ML ++++  + +     
Sbjct: 15   NEKGTLLVVDGHSLAFRAFFAISADNFSTRSGQATNSIWGFITMLSQVVKKEKPDR---- 70

Query: 61   FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             A+ FD    TFRN + P YK  R   P+ LL QLP+++   +A GI  IE  G+E DD+
Sbjct: 71   LAIAFDVKGGTFRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGITYIEKPGYEGDDV 130

Query: 121  IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
            I T   +    G+   ++S D+D  QL+     +    +     +++D + V +K+ + P
Sbjct: 131  IGTLATMGANAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFKDLKEMDKDAVFEKYHVTP 190

Query: 177  EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++   L AL G++ DNIPG+PG+G   AA  + ++G+LENI+ +++ I  KK  E + E 
Sbjct: 191  KQYPDLAALRGETADNIPGVPGVGDGYAAKWINQFGSLENIIEHSNEISGKK-GEALREN 249

Query: 237  AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-VATTYDCD 295
             +  RL+RK+  L  D+ + + ++ L   D +  +L   L  LEF +L  R +  T+   
Sbjct: 250  IDQVRLNRKVNALVCDLDLGVTVDDLCFGDVDAAKLGILLSQLEFGELKKRKILKTF--- 306

Query: 296  AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             +N     ++ N         E   + D  ++  Q +  ++   ++ +      +     
Sbjct: 307  -SNGTQQSIENNMRIMFSSTYEGNANNDELVQGDQSNIDAENFQEMLASIDLHHVKTVED 365

Query: 356  QKLSQYPINNDSYTKIV-----NTKDIQQWVQKLETIGSAS-FKIITDTMDAFHS----- 404
                +  +++  YT+I            Q   + E     S  KII ++           
Sbjct: 366  FINWENSVSSLLYTEIKKDSKNTEDTFDQLSSEEENFEELSSEKIINNSRKCAEPILKNQ 425

Query: 405  KPIAIAISTLDQKDDTSFKVETIFIDLSVHTS--QDSTGKNTLTKEILSYLKKFFENEHF 462
            + +  A                  I L  H +    ++   +  + +L  L+KF +    
Sbjct: 426  EVVIYAHECKKNSKHHFELTADSLIILVAHKAVLLYASDLQSADRALLEMLRKFLQKNSS 485

Query: 463  LKIGHNIKYDKLVLHRYGISMRG------FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
            + + H+ K    +L    +            D  L SY+L+    +  + ++A+ +L   
Sbjct: 486  ITVLHDYKKHLGLLKSLKLFDSNNSFGTPLLDTRLASYLLEPDFRAETLENMAEHYLDIQ 545

Query: 517  RKE--ILKSRKSSIPIDKISDSQV---------------QEHAIENSNVILQLWLLLRPK 559
              E  + ++      +D + D +                +   +  + +I  L L     
Sbjct: 546  SDEDNLGENEAKQGELDLLIDDETPASEEENNEKQTQAREAKFLRTALLIRLLALHFAST 605

Query: 560  LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
            L   K   +   L+ P+  V+  ME  G  +D   L  +  + S +    +   + ++G 
Sbjct: 606  LDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSGMLKQFSADAEFAQNMAWKVAGS 665

Query: 620  KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP------IIKNILE 673
              NL SPKQL  ILF         +TK G + T A+ L+ +    +P       +  +L+
Sbjct: 666  SVNLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLK 725

Query: 674  WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
             R+ +K+K     SL +  +   +R+HT +      TGRL+S +PNLQNIP +   G++I
Sbjct: 726  HRETNKLK-QIVQSLIDAAHYDDRRIHTTFEQTIAATGRLSSADPNLQNIPNRNAAGREI 784

Query: 734  RRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
            R AFI     + L+S DYSQ+ELRI+AH +    L + F +  D H+ VA+ ++ + +E+
Sbjct: 785  RAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQ 844

Query: 793  VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
            V+P  R H K +++ + YG+S + LA QL I  +EA     +YF  F  +H+Y+E   + 
Sbjct: 845  VTPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPAEAEMLKNKYFDTFGNVHDYLESLVSK 904

Query: 853  VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
             ++ GY ET+FGRR ++ +++S   + R   ER A+NAPIQG+AADI + AM+ V   L 
Sbjct: 905  AKELGYTETMFGRRRYFPQLSSNNRASREAAERGALNAPIQGTAADIMKLAMLRVDLGLR 964

Query: 913  DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            + K+ ++++LQIHDEL+ E+   E      I+  +ME A    ++L VPL V+  V  +W
Sbjct: 965  EAKVRSRVILQIHDELILEISHGEQEQVENIVRKAMENA----VHLDVPLNVSTGVGVDW 1020


>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 922

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/993 (28%), Positives = 487/993 (49%), Gaps = 91/993 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQ  + L L+DG+S I RA+Y    L    DG P+ A+  F N++ +      KE   +H
Sbjct: 1   MQGRD-LLLIDGNSLINRAYYGGTEL-NLADGTPIGAVYTFFNIVLR----YAKELHITH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD P  TFR++++  YK+ R  + + L  Q   +++     G     + G+EADDI
Sbjct: 55  LAVAFDLPEPTFRHKLFHSYKSGRKPMSDDLATQFTFLKMILPELGWACYSLAGYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPE 177
           + T    +  E   V I+S D+D +QLV     +    +           + + +G  P+
Sbjct: 115 LGTLAKQSCSEMEHVYILSGDRDTLQLVDSNISVIYPGRHSAVTFYTPARLQEDFGCTPK 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
             +  +AL GD+ D +PG+PGIG  +A+ ++ ++ +L+ I  N S     K +  ++E  
Sbjct: 175 SFITYKALLGDTSDAVPGVPGIGKVSASKIVGQFSSLDEIYENLSAFSP-KVQAKLVEGR 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            TA  +  LV +   +P+   L  L L   +  +    +K   F  L+ ++   Y     
Sbjct: 234 NTAYQALALVTINCAIPLKWALADLSLAGSH-DKWREVIKKYSFNSLLEKMNVLYS---- 288

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                   + T + +    +++   D  I  ++ +SL +++                   
Sbjct: 289 -----AAQVETDKKETALADSDTIADEKIGATEKNSLPNESG------------------ 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 +  +  + +NT + + W++    I   + +                +I   D +
Sbjct: 326 --TQETSTPALYRFINTDEWRTWLENASPILIMAERYP--------------SIYIADPE 369

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 ++        +   + +GK  L   +   L++F      L   + + Y      
Sbjct: 370 QHVYICIDQTIFP-DFYAWSELSGKKILCFSLKQILQRF---PALLSENNCVDYTT---- 421

Query: 478 RYGISMRGFEDIMLMSYVL-DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
                     D+ +++Y   D+ + ++ ++ +A+ +          +    +P +  S S
Sbjct: 422 ------GTIIDLSILAYACGDAQKVAY-LSDLAELYRLNYPISSENTGMKELPENNCSIS 474

Query: 537 --------------QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                          + +  I   N I+ ++ L++ K+  + L ++  ++D P+++V++Q
Sbjct: 475 SAEAEAQAQAVAVADLNKELISYFNTIIAVYSLVKSKIESQGLNYLVSQVDLPLVEVLTQ 534

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G+ +D+ +L++ +   S  +  + + IY L+G +FNL+SP+QL ++LF +L  P G
Sbjct: 535 MERDGVAVDEAVLQRQTEAFSSEIADIADEIYKLAGHEFNLNSPRQLAEVLFNELGLPGG 594

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            K K+G   +T+ +        +PI+  IL +R LSK+ ST+   L  +I     R+HT 
Sbjct: 595 KKLKSGY--STSAEDLMHLQDLHPIVDLILRYRMLSKLLSTFIVGLHKYIAAD-HRIHTT 651

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           +    T TGRL+S +PNLQNIP +T+ G++IR AFI+ P   LI ADYSQIELR+LAH++
Sbjct: 652 FHQTLTQTGRLSSSDPNLQNIPARTEEGRRIRAAFIAAPGCILIDADYSQIELRLLAHLS 711

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
             T + + F    DIH + AA +F ++   V+ + RR  KTINFSI+YGIS F LA  L 
Sbjct: 712 GDTAMLKAFAAKEDIHALTAARVFHMDPVDVTSEHRRVGKTINFSIVYGISAFSLAQDLH 771

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I  +EA +YI  Y+  +P I  Y+       + +GYVET+F RR +  E+ S   + R  
Sbjct: 772 ISVAEAKNYIAEYYATYPQIKAYLNDLVERAKIDGYVETMFKRRRYIPELKSKNYNRRLF 831

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER A+N PIQG+AADI R AM+++ + L + KL + M+LQIHDELV EVPE E    ++
Sbjct: 832 GERVAMNTPIQGTAADIMRLAMVNLARKLREKKLKSHMILQIHDELVLEVPEPEFAEVAE 891

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ++ + ME+     I+L+V L V ++   NW E 
Sbjct: 892 LLRNEMERV----IDLKVSLPVELEYGKNWLEA 920


>gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1]
 gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1]
          Length = 912

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/985 (30%), Positives = 485/985 (49%), Gaps = 89/985 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + +    + A  
Sbjct: 2   KRAVLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPD----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    +  R EIY DYK+NR   PE L+ Q+P +     AF I   +I+G+EADD++ +
Sbjct: 56  FDVKRSSLKRTEIYSDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIEGYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWGIPP 176
                 K+   V I++ DKDL QLV     +    K  +          E VI   G+ P
Sbjct: 116 LAKKIAKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSEDVINYLGVVP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRE 231
           EK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +
Sbjct: 176 EKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   E A +SR+L  + TD+ I++    L     +  +L S  K LEF   I ++   
Sbjct: 236 NLINEKEIAFMSRELAKIFTDLDISVEESGLQY-GMDREKLYSLCKILEFKMFIKKLGL- 293

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                          +   +     S  + T K  S +  ++  
Sbjct: 294 -------------------------------EEKPQNPTLFSFENITEKKESPKVVEEEK 322

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K     ++N     I +   + +  + L      +         + + + + I +
Sbjct: 323 EVEFTKEINLTLSNRELLIIDSEDALNEQKEYLSNYKKIA---------SIYYESLGIIL 373

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           ST D+          ++  L+            L    +S L           I +N K 
Sbjct: 374 STEDKN---------LYFPLNHGGLLAKNIDKNLVVNFISEL-------DIKFISYNFKS 417

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
               L   GI  +     M+++Y L S ++  D      ++ +   K+  K+    I ++
Sbjct: 418 ----LLNLGIKFKSMYMDMMIAYHLISSQTKIDPIIPITEYSTLEPKDF-KTAFGKINVE 472

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            I+     ++  + S  IL ++  L   L  E L  +    + P+I V+S ME  GI+ID
Sbjct: 473 LITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYKILMENEMPLIPVLSLMERKGIEID 532

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KTKTG + 
Sbjct: 533 VQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKTKTG-YS 591

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LE +      I + +L++R+L+K+K+TY D+LP  +++   R+HT ++   T TG
Sbjct: 592 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDE-NSRIHTTFNQIGTATG 650

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K   L + +
Sbjct: 651 RLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAY 710

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           +   D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP  +A++
Sbjct: 711 KEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASE 770

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  ER A+N 
Sbjct: 771 YIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNT 830

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQG+AA++ ++ M+ V+  L+D +    +LLQ+HDEL+FEV E  +   S+I+   M+ 
Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKE-DIALLLQVHDELIFEVEESSVEKYSRILADIMKN 889

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
               +    V L +NI +  NW E 
Sbjct: 890 TVQLE---DVKLNININIGKNWAEA 911


>gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
 gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
          Length = 1003

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/1033 (28%), Positives = 467/1033 (45%), Gaps = 88/1033 (8%)

Query: 1    MQKENH-LFLVDGSSFIYRAFYATPLLSRK--------HDGLPVNAIAGFCNMLWKLLQN 51
            M  EN  L L+DG S   R+F+    ++ K         DG    A+  F + L  ++++
Sbjct: 1    MTTENKTLLLIDGHSLALRSFFGIYTMAEKTGQHIFVRSDGQHTEAVHAFLSTLLSIIKD 60

Query: 52   SRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE 111
            ++     SH AV FD P  TFR   Y +YK  R  IPE    Q+ L++    A  IPA+ 
Sbjct: 61   NQ----PSHIAVAFDLPGGTFRTAEYGEYKGGRNAIPEAFNGQIDLIKKMLGALNIPALT 116

Query: 112  IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDI 165
             + +EADDI+AT T    + G+ V I+S D+D+ QLV+    L   V        +++D 
Sbjct: 117  YENYEADDIVATLTRRGTEAGYKVLILSGDRDIFQLVTDDVTLLYPVTTGPSKGIQRMDP 176

Query: 166  EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
              V KK  +PP     L ALTG+  DN+PG+PG+G   AA  L EYG+L+ ++ N+ +I 
Sbjct: 177  AAVEKKTKVPPHMYPDLAALTGEQADNLPGVPGVGPGFAAKWLGEYGSLDAVIENSDKIG 236

Query: 226  QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
             KK  E + E  +    +R+L  L  D+ + + LE       +   L +F   +EF  + 
Sbjct: 237  GKK-GEALRENIDNVVRNRRLNQLVNDLDLNVTLEDTAFT-PDLDALNTFFDEVEFRTIR 294

Query: 286  NRVATTYDC---DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
             R A T       A    P        E               I TS  +  +D  +   
Sbjct: 295  KRAADTLGPIVRAAGTAGPASSTAEAGEEGATKKAPTGPVYAPIATSAPTKNADAAAFRA 354

Query: 343  SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
                  +      ++ +   +       +         V +     + + K+    + A 
Sbjct: 355  FCAAAAEENYGNDEQGAPIAVPERLEGAVTLYPVTNLPVARPAIGDAPAVKVTKTKIRAA 414

Query: 403  HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               P  + +                   L+   +       ++  E+ + L  +  +E  
Sbjct: 415  EENPELLGVL------------------LTSKNTSLWIDTRSIDPELDAALAAWLSDEAA 456

Query: 463  LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLD--SGRSSH----DIASIAQKWLSY 515
             KI  ++K  + +L  YG  + G  ED  L SY+       +       +  +A+++L  
Sbjct: 457  RKIVMDLKVQRKLLRAYGYELAGAVEDPALSSYMCGFIPTATRKLFSERMEDLAERYLWI 516

Query: 516  T-----------RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
                         ++  +    S+P +      +  +  + S +I +L  LL  ++    
Sbjct: 517  PKDPYAQLVFQPEEDEAEPSLFSLPGEAEPVDNL-RYFTQISRIIHELARLLHYEMEEHG 575

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG------ 618
             L VYE ++ P++ V++ ME  GI +   LL ++    S      ++    + G      
Sbjct: 576  QLKVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQDAARTIIGDTVQTD 635

Query: 619  ---EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN-----CGDNPIIKN 670
               E  NL+S KQL  +LF KL  P   K K+G         E +            +  
Sbjct: 636  DGEEPLNLASVKQLQTVLFDKLALPHTRKIKSGYSTDAESVTELLAKISPESDGAAFLGA 695

Query: 671  ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
            +  +R   K+  T  + L         RVHT +   +  TGRL+S  PNLQNIPI+T+ G
Sbjct: 696  LAAYRDNIKLVQT-VEGLQKAA-ADDGRVHTTFQQGAASTGRLSSTAPNLQNIPIRTEEG 753

Query: 731  QKIRRAFISPP-------TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            ++IR AFI  P        + L++ADYSQIE+RI+ H+A    L   +E   D+HR V +
Sbjct: 754  RRIRGAFIVAPAPVDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLHRYVGS 813

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            E+FGV  E+V+P+ R   K +++ + YG+S F LA QL I   EA +    YF RF  + 
Sbjct: 814  EVFGVAPEEVTPEQRSKVKAMSYGLAYGLSRFGLAKQLNISSDEAGELRTNYFKRFGRVG 873

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             ++        Q+GY ETIFGRR    +++SP    R   ERAA+NAPIQG+AADI + A
Sbjct: 874  RFLRGVLKQAHQDGYTETIFGRRRVLPDLDSPNRVRREAAERAALNAPIQGTAADIIKIA 933

Query: 904  MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
            MI++H+ L +  L T+MLLQ+HDE++ EV   E   A +++V  M  A     +LRVPL 
Sbjct: 934  MINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERVLVEEMSGAA----SLRVPLD 989

Query: 964  VNIKVSNNWQEEN 976
            V +    +WQE  
Sbjct: 990  VQVGWGKSWQEAG 1002


>gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 877

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/979 (30%), Positives = 476/979 (48%), Gaps = 113/979 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + L+DGSS I+RAF+A P LS   DG+  N + GF  M        + +    +  V
Sbjct: 2   KKTVMLIDGSSLIFRAFFALPNLSNN-DGVMTNGVYGFLTMYRNAFDKYKPD----YVLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  + TFRN+ Y DYKANR K P  L  Q  +++    + G+   ++ GFEADDI+ T
Sbjct: 57  AFDRSSKTFRNDEYKDYKANRDKTPNELSYQFGILKDVLDSMGVKYTDLDGFEADDIVGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKM 179
           Y  +A++ G    +I+ D+D +QLV     +Y + K      +  ++ + +++GI P+++
Sbjct: 117 YARMAKEAGDEAVLITGDRDYLQLVDDNVLVYLSKKGVSDTVEYTVDKIKEEYGITPKQL 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DN   IPG                         I +K+  E I +Y   
Sbjct: 177 IDVKGLMGDKSDN---IPG----------------------VDGIGEKRALEFIRKYG-- 209

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                           + +    L+         +  + +A   
Sbjct: 210 -------------------------------SIENLYDNLDEISGKKTKESLENNEAVAY 238

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
               +    T     A       D  +       L ++ SK+N      K   E     S
Sbjct: 239 MSKKIGTIVTH----APVEFDYDDLALGEVDKEGLREKFSKLN----FNKFLEELDGDGS 290

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +      +Y       +++  +   +      FK + D  +  HS+  ++AI T D    
Sbjct: 291 ESESKEFTYKI---GGNLKDLIDSSKKTKEIFFKSVYDGENYIHSEIYSLAIKTKD---- 343

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                               T    +  E +S LK  FE++   KI  +IK + ++L + 
Sbjct: 344 --------------------TDTYIIEPEKISELKNIFEDKTINKISFDIKEEMVLLDKL 383

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
            I + G ++D+MLM Y++D  RSS+D+  ++Q +L+Y     + ++     +    ++  
Sbjct: 384 DIDLIGPYDDLMLMHYLIDPSRSSYDLKLLSQSYLTYELDSDESLIGKGAKTKKYAEVDQ 443

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + +      N I      +   L   +++ +YE ++K +  V++ MEI G   D+ +L
Sbjct: 444 DDLAKLLASQVNAIEDSRDKVFKNLAEYEMVDLYENIEKRLARVLASMEIIGFGTDRKIL 503

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + + A++ K + ++   IYDL+G +FN++S KQLG++LF  L  P   KTKTG + T A+
Sbjct: 504 EGLKADLEKQIEAITSEIYDLAGSEFNINSTKQLGEVLFKDLDLPVVKKTKTG-FSTDAK 562

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++    +PII+ I  +R++ K++STY + L N I++  +   TF       TGRL+S
Sbjct: 563 VLEKLR-DKHPIIEKIERYREIYKLRSTYIEGLENAIDEDGRIRSTFR-QNIASTGRLSS 620

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQN+PIKTD G+ IR+AF +   K LI ADYSQIELRILA +A    +   F   +
Sbjct: 621 QEPNLQNLPIKTDEGRAIRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFNRGI 680

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+F   +++V+   R  AK +NF IIYGIS + L+  L IPR  A +YI +Y
Sbjct: 681 DIHTQTASEVFHTPLDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRPRAKEYIDKY 740

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
              +P I EY++      R  GY+ET+F RR +  EI+S   ++R+  ER A+N PIQG+
Sbjct: 741 KKSYPQIKEYMDDVVQLARSQGYIETLFKRRRYIPEISSRNFNVRSFGERIALNTPIQGT 800

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI  +  L++  L  K++LQIHDE++ E  E++   A  I+   ME A    
Sbjct: 801 AADIIKIAMIDTYNKLKEEGLDAKIILQIHDEIIIESSEKDKEKARDILKKCMEGAA--- 857

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L+V L V+I    +  E
Sbjct: 858 -KLKVDLLVDIGFGESMYE 875


>gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
 gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
          Length = 883

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/977 (27%), Positives = 445/977 (45%), Gaps = 104/977 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LF++D S ++YR+++A   L+    G   NA+ GF   L KL+++   +    H   +
Sbjct: 3   KRLFIIDASGYLYRSYHAIQNLTNAQ-GESTNALYGFIRSLLKLIKDFEPK----HMVAV 57

Query: 65  FDYPAVTFRNE-IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P  T R + +YP+YKANR  +PE L  Q+   +      GIP + +   EADD + +
Sbjct: 58  FDGPKGTERRKTLYPNYKANRKAMPEDLRYQIEWAQEFCDLLGIPKLVVPQVEADDTMGS 117

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCL 182
               AE++G  V + ++DKDL QLVS    + +T K    +  + V + +G+        
Sbjct: 118 VAKWAEQKGTEVYLCTSDKDLCQLVSEKIFVLNTHKNNLIMGSKEVKESFGVS------- 170

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
                                    L   G+  + +        K   + + E       
Sbjct: 171 ------------------PSQMIDYLAIVGDASDNVPGIPGFGAKTAAKVLEE------- 205

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                           L+HL+                   KL  +        A   +  
Sbjct: 206 -------------IGTLDHLLSHP---------------EKLKGKKQEAVRTSAGTAKLS 237

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
              +    +     E E       K  +        +            L R  K     
Sbjct: 238 QKLVTIDTSIDFPKEGEFFEMALPKLKELQQFYTDKN---------FNTLSRELKHESEN 288

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  I +   + Q ++ L+      F   T       ++ + I             
Sbjct: 289 EEQLDYALIDDESSLDQLIEVLQKEKEICFDTETTHWHPLKAELVGIGFCIKQGA----- 343

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                +I ++              ++ L  L   FEN       H++KYD  +L  YGIS
Sbjct: 344 ---AWYIPMNGKLG---------LEKALKKLAPLFENSRIGFYAHHLKYDLHILKNYGIS 391

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQV 538
           +     D +L SY+L      H + ++  +          +++   K+ I + ++   +V
Sbjct: 392 LANISFDTILASYILTPHLRQHSLDALTLEHFGKTKIPTSDLIGKGKNQITMLEVPIEKV 451

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +  E+ +   +L  +   +L   KL  +   L+ P++ V+S+ME  GI +D  +LK +
Sbjct: 452 CAYCCEDVDYTYRLKQIFASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTL 511

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
              ++ +L  LE  I+ ++ E FNL SPKQL  ILF K+K P   KT TG   +T+ ++ 
Sbjct: 512 EKAVNTDLQRLENEIHAIADEPFNLKSPKQLSGILFEKMKIPPPKKTATGY--STSAEVL 569

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +    +  I K +LE+R L K++S+Y ++LP  IN +T R+H  ++ +   TGRL+  +P
Sbjct: 570 ETLQNEYAIAKKMLEFRSLEKLRSSYIETLPKEINPKTGRIHPTFNQSVAATGRLSCQDP 629

Query: 719 NLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQ IPI+T LG+++R+AF         +SADYSQIELR+LAH ++   L   FEN+ DI
Sbjct: 630 NLQQIPIRTPLGREVRKAFRPEKQGWSYLSADYSQIELRLLAHFSEDPTLISAFENNEDI 689

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AA +  + +E+V+ + RR AK +NF I+YG   + L+ +L I   EA+ +IK YF 
Sbjct: 690 HTHTAATVLNIPLEQVTKEQRRQAKAVNFGILYGQQAWGLSKELGISLEEASAFIKTYFQ 749

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+  + +++E  K   R+ G   TI GR     EI+S    IR   ER A+N P+QG+AA
Sbjct: 750 RYQRVKDFVESCKEKTRKTGRAMTIIGRERPIPEIDSKNPQIRGAAERLAVNTPLQGTAA 809

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+ ++AMI + + L   +    M+LQIHDEL+FE+P+ EIT   Q+++ SME        
Sbjct: 810 DLIKKAMIVIDEKLMRGQHLGFMILQIHDELIFEIPDFEITAIEQLVISSMEGV----YQ 865

Query: 958 LRVPLKVNIKVSNNWQE 974
           LRVPL V++ +  NW+E
Sbjct: 866 LRVPLTVDVSIGKNWKE 882


>gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
 gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
          Length = 889

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/987 (32%), Positives = 474/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 14  DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 70  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 130 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 189

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 190 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 234 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 267 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 301

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   ++      IV+        ++      + F       +      +  A S  D
Sbjct: 302 LNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 355

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 356 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 391

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 392 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 449

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 450 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 506

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 507 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 625

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 626 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 685

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 686 AFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 745

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 746 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 805

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 806 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 865

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 866 EEA----IQLSVPLIADENEGATWYEA 888


>gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1]
 gi|737486|prf||1922368A DNA polymerase I
          Length = 921

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/984 (30%), Positives = 487/984 (49%), Gaps = 84/984 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K + L L+DG +  +R+++A P L+    G   +AI GF  +L +L +    +      
Sbjct: 9   SKPDALVLIDGHALAFRSYFALPPLNNSK-GEMTDAIVGFMKLLLRLARQKSNQ-----V 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD P  T R+E Y  YK+ R + PE L  Q+  +R    A G P +E  G+EADD+I
Sbjct: 63  IVVFDPPVKTLRHEQYEGYKSGRAQTPEDLRGQINRIRALVDALGFPRLEEPGYEADDVI 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+ T +AE +G+ V I+++D+D  QL+     +        I    V +K+G+   + V 
Sbjct: 123 ASLTRMAEGKGYEVRIVTSDRDAYQLLDEHVKVIAN-DFSLIGPAQVEEKYGVTVRQWVD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--NASRIKQKKRRENILEYAET 239
            +ALTGD+ DNIPG  GIG KTAA LLQEYG LE +    +A  +K    R+ +L+  E 
Sbjct: 182 YRALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEKVYEAAHAGTLKPDGTRKKLLDSEEN 241

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS-FLKALEFTKLINRVATTYDCDAAN 298
            + S  L  + TD+P+ I     +    + P +    L  LE   L              
Sbjct: 242 VKFSHDLSCMVTDLPLDIEFG--VRRLPDNPLVTEDLLTELELHSLR------------- 286

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P++L +N  E  G A + ++      +T +    +   +    E    +   E     
Sbjct: 287 --PMILGLNGPEQDGHAPD-DLLEREHAQTPEEDEAAALPAFSAPELAEWQTPAEGAVWG 343

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                 +D    ++     +  V +                 A  S+P     +  +  +
Sbjct: 344 YVLSREDDLTAALLAAATFEDGVAR----------------PARVSEPD--EWAQAEAPE 385

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN--EHFLKIGHNIKYDKLV- 475
           +   ++      L+    +         ++  + L++ F    +    +G          
Sbjct: 386 NLFGELLPSDKPLTKKEQKALEKAQKDAEKARAKLREQFPATVDEAEFVGQRTVTAAAAK 445

Query: 476 -----LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
                L   G  +   +D +L +Y+LD   +  ++  +A+++L               P 
Sbjct: 446 ALAAHLSVRGTVVEPGDDPLLYAYLLDPANT--NMPVVAKRYLD-----------REWPA 492

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D  + + +  H +              P L+ +    +Y+ ++KP+  V+ +ME+ G+Q+
Sbjct: 493 DAPTRAAITGHLVRE-----------LPPLLDDARRKMYDEMEKPLSGVLGRMEVRGVQV 541

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D L+ +S +    L  LE  I++ +GE+F++ SPKQL  +L+ KL+  S  KTK    
Sbjct: 542 DSDFLQTLSIQAGVRLADLESQIHEYAGEEFHIRSPKQLETVLYDKLELASSKKTKLTGQ 601

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           ++TA    +     +PII  +LE+R+L K++ TY D +PN +N  T R+HT ++  +  T
Sbjct: 602 RSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIPNLVNPHTGRLHTTFAQTAVAT 661

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+SL PNLQNIPI+++LG++IR+ FI+     LI+ADYSQIELR+LAHIA    + Q 
Sbjct: 662 GRLSSLNPNLQNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQA 721

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AA++ G++   V    RR AKT+NF ++YG+S  RL+  L IP +EAA 
Sbjct: 722 FVEGADIHRRTAAQVLGLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAAT 781

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I+ YF  +PGI  YI  T +F R +GYVET++GRR +   ++S     R   ER A N 
Sbjct: 782 FIEIYFATYPGIRRYINHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNM 841

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AM+ +   L+   +  +MLLQ+HDEL+ E P ++    + +    ME 
Sbjct: 842 PIQGTAADIMKLAMVQLDPQLDA--IGARMLLQVHDELLIEAPLDKAEQVAALTKKVMEN 899

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                + L+VPL V +    NW +
Sbjct: 900 V----VQLKVPLAVEVGTGPNWFD 919


>gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
 gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
          Length = 912

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/985 (30%), Positives = 485/985 (49%), Gaps = 89/985 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + +    + A  
Sbjct: 2   KRAVLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPD----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    +  R EIY DYK+NR   PE L+ Q+P +     AF I   +I+G+EADD++ +
Sbjct: 56  FDVKRSSLKRTEIYSDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIEGYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWGIPP 176
                 K+   V I++ DKDL QLV     +    K  +          E VI   G+ P
Sbjct: 116 LAKKIAKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSEDVINYLGVVP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRE 231
           EK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +
Sbjct: 176 EKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   + A +SR+L  + TD+ I++    L     +  +L S  K LEF   I ++   
Sbjct: 236 NLINEKDIAFMSRELAKIFTDLDISVEESGLQY-GMDREKLYSLCKILEFKMFIKKLGL- 293

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                          +   +     S  + T K  S +  ++  
Sbjct: 294 -------------------------------EEKPQNPTLFSFENITEKKESPKVVEEEK 322

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K     ++N     I +   + +  + L      +         + + + + I +
Sbjct: 323 EVEFIKEINLTLSNRELLIIDSENGLNEQKEYLSNYKKIA---------SIYYESLGIIL 373

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           ST D+          ++  L+            L    +S L           I +N K 
Sbjct: 374 STEDKD---------LYFPLNHGGLLAKNIDKNLVVNFISEL-------DIKFISYNFKS 417

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
               L   GI  +     M+++Y L S ++  D      ++ +   K+  K+    I ++
Sbjct: 418 ----LLNLGIKFKSMYMDMMIAYHLISSQTKIDPIIPITEYSTLEPKDF-KTAFGKINVE 472

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            I+     ++  + S  IL ++  L   L  E L  +    + P+I V+S ME  GI+ID
Sbjct: 473 LITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYKILMENEMPLIPVLSLMERKGIEID 532

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGD+LF KL  PSG KTKTG + 
Sbjct: 533 VQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDVLFVKLNLPSGKKTKTG-YS 591

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LE +      I + +L++R+L+K+K+TY D+LP  +++   R+HT ++   T TG
Sbjct: 592 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDE-NSRIHTTFNQIGTATG 650

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K   L + +
Sbjct: 651 RLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAY 710

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           +   D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP  +A++
Sbjct: 711 KEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASE 770

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  ER A+N 
Sbjct: 771 YIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNT 830

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQG+AA++ ++ M+ V+  L+D +    +LLQ+HDEL+FEV E  +   S+I+   M+ 
Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKE-DIALLLQVHDELIFEVEENSVEKYSEILADIMKN 889

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
               +    V L +NI +  NW E 
Sbjct: 890 TVQLE---DVKLNININIGKNWAEA 911


>gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
 gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
          Length = 899

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/974 (27%), Positives = 446/974 (45%), Gaps = 91/974 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H  V
Sbjct: 6   PRLLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQ----PTHIVV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR + Y +YKA R + P     Q+ LV+    A  +P +E +G+EADD+IAT
Sbjct: 62  AFDVSRRSFRTDRYAEYKAGRSETPTDFKGQVSLVKEVLAALRVPVVEKEGYEADDVIAT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKM 179
               A  +G  V I + D+D  QLV     +    K      ++D   V  K+G+ P++ 
Sbjct: 122 LACQARDQGMDVLITTGDRDAFQLVGERVTVLYPRKGVSDLARMDPAAVEAKYGVTPDRY 181

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G++ DN+PG+PG+G KTAA  +  YG +E ++  A  IK  K  +++ E    
Sbjct: 182 RDLAALVGETSDNLPGVPGVGPKTAAKWINLYGGVEGVVARADEIKG-KAGDSLRERLAD 240

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
              + ++  L +D+ + +  E    +  +   +      L+F  L +R+    +      
Sbjct: 241 VIRNYEINCLVSDLELPVRPEDARWQGWDREAVHQVFDTLQFRILRDRLYQYLEAVEPEA 300

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E           +  A+   +            +++  T                    +
Sbjct: 301 EAGFDLAGEVLTEPGALAGWLGTHAPAGAPVGLAVTLDTGPNRRHTATVTAMALATAAGA 360

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               +        +   +  W+   E                  SKP  +A +    +  
Sbjct: 361 GAWFDPSRLDA-DDEAALAGWLADAERPKVL-----------HDSKPAVLAFAAHGWE-- 406

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                      ++ + ++       LT   L YL +    +   + G             
Sbjct: 407 --LHGIARDTQIAAYLARPDQRSYDLTDLALRYLHRELRVDA-PETGQ------------ 451

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
            +++ G  D                   +A++ L           ++++ +    D+++ 
Sbjct: 452 -LTLDGLGD-----------------EGVAEQNLMLQ-------ARATLDLADAIDAELS 486

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
               +++                     +   ++ P++ V++ ME TGI  D D L ++ 
Sbjct: 487 RDGEQSAR--------------------LMAGVELPLMRVLATMERTGIAADTDYLSELE 526

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A  +  + +  +  Y++ G +FNL SPKQL +ILFT+L  P   + KTG           
Sbjct: 527 AHFAAEVKAAAQGAYEVVGREFNLGSPKQLQEILFTELGLPKTKRIKTGYTTDADALQWL 586

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++P++ ++L  R ++K+KST  D L   ++    R+HT ++     TGRL+S EPN
Sbjct: 587 FAQTEHPLLHHLLRHRDVAKLKST-VDGLLKSVSDDG-RIHTTFNQTVAATGRLSSTEPN 644

Query: 720 LQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+T+ G++IRRAF+       L++ADYSQIE+RI+AH++    L + F +  D H
Sbjct: 645 LQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFH 704

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+ +F V +  V+   RR  K +N+ + YG+S F L+ QL I   EA   ++ YF  
Sbjct: 705 AATASSVFTVEVGDVTADQRRKIKAMNYGLAYGLSAFGLSQQLGISAEEARGLMENYFAG 764

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+ +Y+++     RQ+GY  TI GRR +  ++ S     R + ER A+NAPIQGSAAD
Sbjct: 765 FGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAERMALNAPIQGSAAD 824

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ V  +L D  L ++MLLQ+HDELVFEV   E  T   ++   M +A      L
Sbjct: 825 IIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERETLEALVRKQMGEA----YPL 880

Query: 959 RVPLKVNIKVSNNW 972
            VPL+V++   ++W
Sbjct: 881 SVPLEVSVGEGHDW 894


>gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
 gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
          Length = 881

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/991 (31%), Positives = 469/991 (47%), Gaps = 127/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +  +GL  NA+ GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI+S DKDL+QL    T +  + K     E+    ++ +K
Sbjct: 117 DDIIGTLDKMAEATSVPFEVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLKEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+                          +I +K   +
Sbjct: 177 MGLTPEQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGIK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +LEY                          I E  +  +     + L   K    ++ T
Sbjct: 212 LLLEYGSL---------------------DGIYEHIDEMKASKMKENLINDKEQAYLSKT 250

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                 N  P+ + ++     G  +E         +   F  L         E  P  + 
Sbjct: 251 LATIDTN-APIEIGLDDITYTGPHLENLAKF---YEEMGFKQLRQALDLSGEEAAPVAID 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
              +++++   +  D++                       F       +      I  A 
Sbjct: 307 YTEVEQVTSDMLTEDTF-----------------------FHFEMFGDNYHTEPIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
            T                   ++ S D+    T         K+F E        ++ K 
Sbjct: 344 GTKGH----------------LYASTDTGLLQTP------IFKEFLE--KTPLKVYDFKR 379

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L   GI+++    D  L  Y+L S    ++I++IA  +    L        K  K 
Sbjct: 380 AKVLLSHLGITLQNPAFDSRLAKYLL-STVEDNEISTIASLYSQIALPLDEVVYGKGAKK 438

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +IP   +    + EH      V+L     +  +L     L +   +++P+  V+++MEI 
Sbjct: 439 AIPEKAV----LLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIA 494

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ +  E    L  L + IY+L+GE+FN++SPKQLG ILF KL+ P     K
Sbjct: 495 GIKVERQTLQDMQVENEAVLERLTQEIYELAGEEFNINSPKQLGVILFEKLELPLEYTKK 554

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ++KI+STY   L + I +  + +HT Y   
Sbjct: 555 TKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGK-IHTRYVQD 613

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+   
Sbjct: 614 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEEENSVLLSSDYSQIELRVLAHISGDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +F +   E V+P  RR+AK +NF ++YGIS F L+  L I 
Sbjct: 674 HLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGIS 733

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  YI+ YF R+PGI +Y+E+     R  GYVET+F RR    +INS   ++R   E
Sbjct: 734 RKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREIPDINSRNFNVRGFAE 793

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI + ++LE     TKMLLQ+HDE+V +VP +E+    +++
Sbjct: 794 RTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIKELV 853

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL+ +      W E 
Sbjct: 854 KETMESA----IELVVPLEADENEGKTWYEA 880


>gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141]
          Length = 877

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/987 (32%), Positives = 476/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGVKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q      Q   ++S    + L    +
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAEGLDFTIV 306

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            ++SQ  ++ +S                        F I     +      +  A S  D
Sbjct: 307 DQISQDMLSEES-----------------------IFHIELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLVVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375]
          Length = 877

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/987 (31%), Positives = 473/987 (47%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 289

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   ++      IV+        ++      + F       +      +  A S  D
Sbjct: 290 LNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
 gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
          Length = 889

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/987 (32%), Positives = 475/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R  +  GL  NAI GF  ML  LL+        S
Sbjct: 14  DKKKLLLIDGSSVAFRAFFALYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PS 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADD
Sbjct: 70  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 130 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLT 189

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 190 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 234 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 266

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 267 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 301

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   ++      IV+        ++      + F       +      +  A S  D
Sbjct: 302 LNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 355

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 356 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 391

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 392 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 449

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 450 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 506

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 507 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 566

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 625

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 626 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 685

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 686 AFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 745

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 746 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 805

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 806 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 865

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 866 EEA----IQLSVPLIADENEGATWYEA 888


>gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
 gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
          Length = 908

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/980 (27%), Positives = 441/980 (45%), Gaps = 95/980 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L L+DG S  +RAF+A P  +     G   NA  GF +ML  +L++       +H
Sbjct: 12  TTRPRLLLIDGHSMAFRAFFALPAENFSTSTGQHTNAAYGFTSMLINVLRDE----APTH 67

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    +FR E YP+YK  R   PE    Q+PL++    A GI  I +  +EADDI
Sbjct: 68  VAVAFDVSRKSFRTEEYPEYKDGRATTPEEFKGQVPLIQQILDALGIQWITLDNYEADDI 127

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           +AT ++ A  EG+   I S D+D  QLV+  T +   VK      ++  E V  K+G+ P
Sbjct: 128 LATLSHQAGAEGYETLICSGDRDSFQLVTGDTTVLYPVKGVSELARMTPEAVEAKYGVSP 187

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++   L AL G+  DN+PG+PG+G KTAA  +  Y  L+ ++  A  IK  K  +++ ++
Sbjct: 188 QRYRDLAALVGEKSDNLPGVPGVGPKTAAKWITTYEGLDGVIAAADAIKG-KAGQSLRDH 246

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                 +                           RL   +  LE                
Sbjct: 247 LSDVMRN--------------------------ARLNKLVTDLELAS------------- 267

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P  L  +  + +  +    +    +++    S L+D+    + E        E   
Sbjct: 268 ---RPEGLAWSGWDAEATSEIFSVLEFASLRDRLASQLADKRIGEDPEPVGATEVAEADL 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++    +  W+      G       T        +   +A+++   
Sbjct: 325 A-------------VLEPGQLAAWLSARAGTGRIGVA-ATGEFKHGAGRLSGLALASD-- 368

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                            H   D +  +   +  L+    +  +    K  H+ K   L  
Sbjct: 369 ---------------GHHAWLDPSALDEADENALAA---WLADPTATKAVHDAKRFGLAC 410

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-IDKIS 534
             +G ++ G   D  L +Y++     S  + ++A ++L         + + ++  ++   
Sbjct: 411 RSHGWNLDGVTSDTALAAYLVRPDLKSDSLEALATRYLGRELNPRTAAAQPTLDGLETDG 470

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +++   +    +     L  +L  +L       +   ++ P++ V+++ME  GI  D   
Sbjct: 471 ENEAAANLAALAAATRDLAEVLDGELASHNAAGLLADMELPVMTVLTEMEAIGITADVAH 530

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  + +  +          +    + FNL SPKQL +ILF KL  P   +TKTG      
Sbjct: 531 LTGLESTFAAEAAEAVAAAHAAVDQTFNLRSPKQLQEILFDKLGMPKTKRTKTGYTTDAD 590

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                     +P+++ IL  R   K+K T +  L         R+HT Y      TGRL+
Sbjct: 591 SLAGLYATTQHPVLEAILRHRDREKLKQTVSGLLAEV--AEDGRIHTTYQQNVAATGRLS 648

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIP++TD G++IR+ FI     + L++ DYSQIE+RI+AH++    L + F++
Sbjct: 649 SKDPNLQNIPVRTDAGRRIRQGFIVTEGFETLMTCDYSQIEMRIMAHLSGDEGLIEAFKS 708

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  VAA +F V    V  + RR  K +++ + YG+S + L+ QL I   EA   ++
Sbjct: 709 GEDLHTTVAARVFNVEPGSVDAEQRRRIKAMSYGLAYGLSAYGLSQQLGITPEEARGLME 768

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +Y+       R+ GY ET+FGRR +  ++NS     R++ ERAA+NAPIQ
Sbjct: 769 EYFTRFGGVRDYLRTVVEEARKAGYTETMFGRRRYLPDLNSDNRQRRDMAERAALNAPIQ 828

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM++VH++L   K+ +++LLQ+HDELV E+   E     +++   M  A  
Sbjct: 829 GSAADIMKIAMLNVHRALVAAKVKSRVLLQVHDELVLEIAPGEAPEVEKLVRAEMASAA- 887

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
               L VPL+V++    +W 
Sbjct: 888 ---ELMVPLEVSVGTGGDWD 904


>gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 899

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/970 (27%), Positives = 462/970 (47%), Gaps = 88/970 (9%)

Query: 15  FIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFR 73
             +RAF+A P        G   NA+ GF +M   L++        +H AV FD P  TFR
Sbjct: 1   MAFRAFFALPVDSFTTSTGQATNAVHGFTSMFLSLIEQE----APTHVAVAFDLPGGTFR 56

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
            + Y +YK  R + P+  + Q+ L+     A G+ ++   GFEADDI+AT    A+ E  
Sbjct: 57  TQEYAEYKGTREQTPQPFIGQIELIEEVLAALGVRSVTAPGFEADDILATLAAQAQDEDM 116

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
            V I S D+D  Q V+    +   +K      ++  + V +++G+PPE+   L AL G++
Sbjct: 117 EVLICSGDRDSFQTVTQRCTVLYPIKGVSTLRRMTPQEVTERYGVPPERYPHLAALVGET 176

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DN+PG+PG+G KTAA  +  Y  LE ++ +A +IK  K  +N+ ++ +    +R+L  L
Sbjct: 177 SDNLPGVPGVGPKTAAKWINLYDGLEGVIAHAEQIKG-KAGQNLRDHLDDVIRNRRLNRL 235

Query: 250 RTDVPITIPL-EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
           RTD+ + I     L +   +   +   +++LEF  L  R                     
Sbjct: 236 RTDLDLGIDPVADLRMPLADRSAVARVMESLEFRTLHQR--------------------- 274

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
                            ++   FS  +D   ++  E +P+++ LE L+  +         
Sbjct: 275 ----------------ALRVLSFSDTADHAEEVTGEGSPRQV-LEDLEVFTLGREVAPG- 316

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
                   ++ W+ +                   H     + I           + +   
Sbjct: 317 -------QVEGWIHR-------------------HLGDAGVTIGVDVVGTLAPGRGDAQV 350

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-E 487
           + +S            L  +    L +   +    K+  + K     L   GI + G   
Sbjct: 351 VAVSDGARSLVVDMTLLLAQDEEALDQLLSDPDHPKVVADAKGSWHALRGRGIGLDGVVA 410

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR-KSSIPIDKISDS---QVQEHAI 543
           D  L +Y+    + S+D+A++A++WL    + + ++  +++  ++ ++D    +    + 
Sbjct: 411 DPALAAYLCRPEQRSYDVATLAERWLGLDLESLAQAEPQTAFDLESLADGTPPRTLLASA 470

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             +  +L L  +L  ++     + +Y  L+ P+   ++QME  GI +D  +L     E+ 
Sbjct: 471 RRAACLLPLQEVLGEQMAQRGAVTLYTELEMPVAACLAQMEDAGIAVDDSVLAAREVELD 530

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             +    E  +  +G + NLSSPKQL  ++F +LK P   +TK G               
Sbjct: 531 ARVTHAAEAAFAAAGHELNLSSPKQLQAVIFDELKMPKTRRTKRGYTTDAEALAALYAKT 590

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P ++++LE R   K++ T  + L   +     R+HT +      TGRL+S +PNLQNI
Sbjct: 591 GHPFLEHLLEHRDAIKLRQT-VEGLRKAVLADG-RIHTTFQQTVAATGRLSSTDPNLQNI 648

Query: 724 PIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           P +T+ G +IR AF     +  L++ADYSQIE+RI+AH++    L   F +  D+HR VA
Sbjct: 649 PARTEEGMRIREAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRYVA 708

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           A + G+++  V+ + R H K +++ + YG+S + LA QL I  +EA+     YF RF  +
Sbjct: 709 AMVHGIDVADVTAEQRSHVKAMSYGLAYGLSTYGLARQLGIDNAEASALRDAYFARFGAV 768

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
           H+Y+E      R++G+ +T+FGRR +  ++ S     R + ERAA+NAPIQGSAADI ++
Sbjct: 769 HDYLESVVAQARRDGWTQTMFGRRRYLPDLTSDNRQRREMAERAALNAPIQGSAADIVKK 828

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI V  +L +  LA+++LLQIHDEL+ E+   E     +++   M  A      L VPL
Sbjct: 829 AMIDVADALAESALASRVLLQIHDELLLEIAPGEAEAVEELVRARMSGAA----QLSVPL 884

Query: 963 KVNIKVSNNW 972
            V++     W
Sbjct: 885 DVSVGRGATW 894


>gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
 gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
          Length = 887

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/987 (32%), Positives = 475/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R  +  GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLNHMGIRHYDLAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 289

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   ++      IV+        ++      + F       +      +  A S  D
Sbjct: 290 LNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39]
 gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I
 gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39]
          Length = 877

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/987 (32%), Positives = 472/987 (47%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 289

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   +       IV+        ++      + F       +      +  A S  D
Sbjct: 290 LNMSSADVAEGLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           Q                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 Q--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
 gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
          Length = 871

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/984 (29%), Positives = 484/984 (49%), Gaps = 127/984 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + + L+DG S + RAFY  P L+   DGL  NAI GF  +++K+L+  + +    +  V
Sbjct: 2   NSKIVLIDGHSILNRAFYGLPDLTNA-DGLHTNAIYGFLTIMFKILEEEKPD----YLTV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+E+Y +YK  R  + + L  Q+P+++   +A GI  IE  G EADD+I T
Sbjct: 57  AFDVHAPTFRHEMYEEYKGTRKPMADELRQQVPVIKEVLKAMGIRIIEQAGLEADDLIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
            +    ++G  V++IS D+DL+QL +    +     +      E    + V +++ + P 
Sbjct: 117 LSKRCAQKGMEVSVISGDRDLLQLATEQVKIRIPKTKQGRTEVEDYYAQDVKERYQVTPT 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L+AL GD+ DNIPG+P                          I +K   + I EY 
Sbjct: 177 EFIDLKALMGDASDNIPGVPS-------------------------IGEKTATKIITEY- 210

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                             +I   +  +++   PR    LK      ++++   T + DA 
Sbjct: 211 -----------------HSIEEAYAHVDEVKPPRASKALKEHWDMAVMSKRLATINVDA- 252

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                       E K   I TE +     +  QF +L                 L+R   
Sbjct: 253 -----DFPYELEEAKLGNIYTE-EAYAYFQKLQFKNL-----------------LQRFDV 289

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF-----HSKPIAIAIS 412
            +      D++ ++ + K+ +      +        I  DT +        +    I + 
Sbjct: 290 TAPSNQVEDAFQEVKDRKEAEAIFAAAKGADEIGACIFKDTQNVLPLFAGQAGIDGIGLC 349

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
              +KD    +                 G+      +L  L+   ++        +IK  
Sbjct: 350 F-SKKDVYCIR----------------AGQGIELSWLLEQLEGVAKDAG-RFAMFDIKE- 390

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
              L    I+ +    D+ + +Y+L+  +S++    +A++ L+   ++ L          
Sbjct: 391 --ALEHIRIARQDNCFDVTVAAYLLNPLKSNYTYEDVAREQLNLIIEDKL---------- 438

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
                     A   +        +L  +L    +  ++  ++ P++  +  ME+ G++++
Sbjct: 439 -----DAWMKACYEAYTAYAASGILWKRLKECLMDRLFMDVEMPLVFTLYDMEVNGVRVE 493

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + LK    ++   ++ LE++IY+ +GE FN++SPKQLG +LF  +K P G KTKTG   
Sbjct: 494 AEALKYYGDQLGAKIVELEKDIYEEAGENFNINSPKQLGVVLFENMKIPGGKKTKTGY-- 551

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +TA D+ +    D PII  ILE+RQ +K+KSTYAD L N+I +   R+H+ ++   T TG
Sbjct: 552 STAADVLEKLAPDYPIIAKILEYRQYTKLKSTYADGLANYIREDG-RIHSKFNQTITATG 610

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIPI+ +LG+ IR+ FI       + ADYSQIELR+LAH +  + L + +
Sbjct: 611 RLSSTEPNLQNIPIRVELGRLIRKVFIPEDGFVFVDADYSQIELRVLAHCSGDSHLIEAY 670

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           +   DIHR+ A+++F +  ++V+ Q RR+AK +NF I+YGIS F L+  L I R EA+ Y
Sbjct: 671 KEKKDIHRITASQVFHIPFDEVTDQQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASKY 730

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF  +PGI  +++ T    ++ GYV T+FGRR    E++S     R+  ER A+NAP
Sbjct: 731 IEDYFTAYPGIKIFLDDTVKHAKEMGYVVTLFGRRRPVPELSSSNYMQRSFGERVAMNAP 790

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AM  V + L++ K+ ++++LQ+HDEL+ E  + E+    +I+   ME+A
Sbjct: 791 IQGTAADIIKIAMTGVGRRLKEQKMKSRLVLQVHDELLVEAYKPELDQVKKILKEEMEQA 850

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
                +L VPL++++    NW E 
Sbjct: 851 A----SLDVPLEIDMHTGENWYEA 870


>gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585]
 gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585]
          Length = 877

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/987 (32%), Positives = 476/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q      Q   ++S    + L    +
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAEGLDFTIV 306

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            ++SQ  ++ +S                        F       +      +  A S  D
Sbjct: 307 DQISQDMLSEES-----------------------IFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570]
          Length = 877

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/987 (32%), Positives = 476/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q      Q   ++S    + L    +
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAEGLDFTIV 306

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            ++SQ  ++ +S                        F       +      +  A S  D
Sbjct: 307 DQISQDMLSEES-----------------------IFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
          Length = 881

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/991 (31%), Positives = 468/991 (47%), Gaps = 127/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +  +GL  NA+ GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI+S DKDL+QL    T +  + K     E+    ++ +K
Sbjct: 117 DDIIGTLDKLAESTSVPFDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLKEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+                          +I +K   +
Sbjct: 177 MGLTPEQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGIK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +LEY                          I E  +  +     + L   K    ++ T
Sbjct: 212 LLLEYGSL---------------------DGIYEHIDEMKASKMKENLINDKEQAYLSKT 250

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                 N  P+ + ++     G  +E        +    F  L           TP  L 
Sbjct: 251 LATIDTN-APIEIGLDDITYTGPHLENLAKFYEDM---GFKQLRQALDLSEEAATPVALD 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
              +++++   +  DS+                       F       +      I  A 
Sbjct: 307 YTEVEQVTSDMLTEDSF-----------------------FHFEIFGDNYHTEPIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
            T  Q                ++ S D+    T         K+F E        ++ K 
Sbjct: 344 GTKGQ----------------LYVSTDTGLLQTP------IFKEFLE--KTPLKVYDFKR 379

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L   GI+++    D  L  Y+L S    ++I++IA  +    L        K  K 
Sbjct: 380 AKVLLSHLGITLQNPAFDSRLAKYLL-STVEDNEISTIASLYSQITLPLDEVVYGKGAKK 438

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            IP   +    + EH      V+L     +  +L     L +   +++P+  V+++MEI 
Sbjct: 439 IIPEKAV----LLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIA 494

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ +  E    L  L + IY+L+GE+FN++SPKQLG ILF KL+ P     K
Sbjct: 495 GIKVERQTLQDMQVENEAVLERLTQEIYELAGEEFNINSPKQLGVILFEKLELPLEYTKK 554

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ++KI+STY   L + I +  + +HT Y   
Sbjct: 555 TKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGK-IHTRYVQD 613

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+   
Sbjct: 614 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEEVNSVLLSSDYSQIELRVLAHISGDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +F +   E V+P  RR+AK +NF ++YGIS F L+  L I 
Sbjct: 674 HLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGIS 733

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  YI+ YF R+PGI +Y+E+     R  GYVET+F RR    +INS   ++R   E
Sbjct: 734 RKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREIPDINSRNFNVRGFAE 793

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI + ++LE     TKMLLQ+HDE+V +VP +E+     ++
Sbjct: 794 RTAINSPIQGSAADILKIAMIHLDQALEAGAYKTKMLLQVHDEIVLQVPTDELAAIKALV 853

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL+ +      W E 
Sbjct: 854 KETMESA----IELAVPLEADENEGKTWYEA 880


>gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
 gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
          Length = 877

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/987 (32%), Positives = 472/987 (47%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 289

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   +       IV+        ++      + F       +      +  A S  D
Sbjct: 290 LNMSSADVAEGLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           Q                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 Q--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLSQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYLQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031]
 gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031]
          Length = 877

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/987 (31%), Positives = 473/987 (47%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 289

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   ++      IV+        ++      + F       +      +  A S  D
Sbjct: 290 LNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYMQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304]
 gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304]
          Length = 976

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/1007 (27%), Positives = 475/1007 (47%), Gaps = 81/1007 (8%)

Query: 10  VDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           VDG S  +RA++A P       DG   NA+ GF  ML ++L++ +     SH A+ FD  
Sbjct: 2   VDGHSLAFRAYFALPADSFSTSDGQVTNAVYGFTTMLAQVLRDEK----PSHVAIAFDVK 57

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFRN + P YK  R   PE LL QLPL++    A  I  +E +GFE DDIIAT   + 
Sbjct: 58  GGTFRNRMLPQYKGTRDAAPEDLLSQLPLIQQVLSALDISFVEKEGFEGDDIIATLATMG 117

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184
           EK G+   ++S D+D  QLV  +  +          + +  + V  K+ + P +   L A
Sbjct: 118 EKAGYETFVLSGDRDAFQLVDQSITVLYPGHHFKDLKHMTPQAVFDKYKVWPNQYPDLAA 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + G+  DNIPG+PG+G   AA  + E+G+L+ I+ +A +I  KK  + + +  +  RL+R
Sbjct: 178 MRGEQADNIPGVPGVGDGYAAKWINEFGSLQEIIDHADQISGKK-GQALRDNVDQVRLNR 236

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           ++  L  DV + + L+  IL + N  ++     +L+F K       T    A   +    
Sbjct: 237 RVNALVRDVDLPVSLDDFILHEPNIEKVNEVFSSLQFGKNTKTRILTAMAIAEGRD---- 292

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQKLSQYPI 363
                E       + +    +     FS  ++  +  NSE   PQ   L          I
Sbjct: 293 -----EKAAAVAASGLKAPVSSSVYTFSDGTEDINPANSEVIDPQIQTLPSSSDKRSQVI 347

Query: 364 NNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           N+    ++V++         + +T G          +D       ++++ T   +     
Sbjct: 348 NDFLSKRLVDSVTSTILTDNRQKTEGRVWVLSARGEVDRGTGHLRSLSVMTDQGQ----- 402

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---- 478
                        +      +    +++  L    ++     + H+ K    +L      
Sbjct: 403 -------------ALVLQEADLHNSQVIQALGSAIKSFCGQLVVHDFKRLIHLLTSILPE 449

Query: 479 --YGISMRGFEDIMLMSYVLDSGRSSH--DIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
                ++    D  L  Y++    ++     A  AQ +L    +E  +       +D  +
Sbjct: 450 ISADRTLLPLSDTRLEGYLVQPDATAKIETAAQYAQYFLHLETEENPQPHPQQGALDLGN 509

Query: 535 DSQVQ----------------------EHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
           DS +                           +    IL L  L  P L   + + + + +
Sbjct: 510 DSDLSSQGSNEDNQPDQEDQAAQARRDARDAKECAYILALHQLFYPVLEKRQEISLLKDI 569

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+  V+++ME+TG  +D   L+ +    +      E   +D +G++ NL SPKQL  +
Sbjct: 570 ELPVSTVLARMELTGAGVDYSRLRNMYDSFAAQAAQAEHIAWDQAGKQINLQSPKQLQAV 629

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYAD 686
           LF  +      KTK+G   T A  L+++      N   N  +  +L  R+++K+K     
Sbjct: 630 LFDDMGLEPTRKTKSGGRTTNAAALQELYIRSVHNERANTFLGALLRHREVNKLK-QIVQ 688

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-L 745
           +L + +N    R+HT +      TGRL+S +PNLQNIP +   G++IR AF+       L
Sbjct: 689 TLMDSVNTSDGRIHTTFEQTVAATGRLSSTDPNLQNIPNRNVEGREIRAAFVPSDGYLSL 748

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           +S+DYSQ+ELR++AH++    L + F +  D H+ VA+ ++ V +++++P  R H K ++
Sbjct: 749 LSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYQVPLDQITPDQRSHIKAMS 808

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           + + YG+S + LA QL I  +++     +YF  F  +H+Y+E   +  ++ GY  T+FGR
Sbjct: 809 YGLAYGLSTYGLAQQLGISPAQSDQLKAKYFSTFGKVHDYLESLVSQAKKRGYTTTMFGR 868

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R ++ ++ S +  +R+  +RAA+NAPIQGSAADI + AM     SL++  + ++++LQIH
Sbjct: 869 RRYFPDLLSSRRQLRDAAQRAALNAPIQGSAADIMKIAMNKAATSLDEAGVKSRIILQIH 928

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           DELV E+   E    + ++ ++ME+A    + L VPL V+  + ++W
Sbjct: 929 DELVVELASGEEEEVTALVKNAMEEA----VELAVPLDVSTGIGSDW 971


>gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 893

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/991 (28%), Positives = 470/991 (47%), Gaps = 116/991 (11%)

Query: 1   MQKEN---------HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQ 50
           M+K N          L ++DG S  +RAF+A P  +     G   NA+ GF  M  +L++
Sbjct: 1   MKKRNSQGHTMIQQKLLIIDGHSMAFRAFFALPPENFTTTTGQATNAVYGFTTMALRLIE 60

Query: 51  NSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAI 110
             +     +H AV FD    +FR++ YP+YKA R + P+    Q+ L++   +  GI  I
Sbjct: 61  EHQ----PTHIAVAFDTKVKSFRSDEYPEYKAGRAETPQEFKGQIGLIKQVLETVGITWI 116

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIE 166
              GFEADDI+AT     ++ G  V + S D+D  QL++    +    +     + +D  
Sbjct: 117 TKDGFEADDILATLAKQGDEAGMKVLVASGDRDSFQLITDNVNVIYPGRTPADLKIMDAA 176

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V +++G+PP+    + ALTG+  DN+PG+PG+G KTAA  + +Y  L  +L NA +I  
Sbjct: 177 AVEERYGVPPQWYPHIAALTGEKADNLPGVPGVGEKTAAQWVMKYAGLAGVLANADKI-G 235

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            KR E + E+      +R+L  L T++ +   +  L  E  N   +      LEF +L  
Sbjct: 236 GKRGEALREHEADVLRNRRLNELLTNLELPYNVADLTREPVNRQAVNELFDVLEFNRLRK 295

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           RV    D +A + E                  EID   TI+T +   +SD          
Sbjct: 296 RVFD-LDANADSNE------------------EIDDTRTIETLELKLVSDG--------- 327

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
                                          Q W+ ++      +            ++ 
Sbjct: 328 ------------------------------FQNWISQVPDQAVLAVASE-----YVKTEL 352

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
            A+AI    +     + +E  F                L+      L+    +     I 
Sbjct: 353 NALAIYYATEGTGHCYALEPRF----------------LSDTEQKELEDLLTSHAV--IT 394

Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H  K  +      G  +     D+ L +Y+L   +  + + ++++K+L  +   + +S +
Sbjct: 395 HEAKRLRHAFRECGFEIGELAEDVELEAYLLGPDQREYSLPTLSEKYLQRSLP-VAESAQ 453

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            S+  D              + V+  L  +L  +L   +L  +Y  L+ P+   + ++E 
Sbjct: 454 LSLLRD-------FSELAGQAQVVYDLHEVLFKQLETTQLAELYRGLELPVQADLYELEK 506

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G+ +  D+L Q+  E+++ +   EE  Y+  G K NL+SP QL  +LF +L+ P   KT
Sbjct: 507 HGVAMSMDVLNQLLEELTEQVEVAEEAAYNAIGHKVNLASPMQLQTVLFEELQMPKTKKT 566

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           K G        +E      +P ++++L  R   K++    + L + +     R+HT +  
Sbjct: 567 KRGYTTNAEALVELYEKTQHPFLQHLLAHRDKIKMR-QIVEGLISAVGADG-RIHTTFQQ 624

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKI 764
               TGRL+S EPNLQNIP +T  G +IR AF+       L++ADYSQIE+R++AH++K 
Sbjct: 625 TVAATGRLSSTEPNLQNIPARTAEGMRIRGAFVPGTGFDYLLTADYSQIEMRLMAHMSKD 684

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F++  D+HR +AA +F V +E+V+P +R   K  ++ + YG+S + L+ QL I 
Sbjct: 685 EALIEAFKSGEDLHRTMAAMVFAVPVEEVTPALRSQIKATSYGLAYGLSSYGLSQQLGIS 744

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA    ++YF RF G+  ++ +     R+ G+  T+ GRR +  ++NS  +++R + E
Sbjct: 745 VPEARKLKEKYFERFGGVGRFLGEVVEEARERGFTATMMGRRRYLPDLNSGNTNLRAMAE 804

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAA+NAPIQG+AADI + AM  V + L +  LA+++LLQ+HDELV EV   E+    QI+
Sbjct: 805 RAALNAPIQGTAADIIKLAMHLVMRVLRERGLASRVLLQVHDELVLEVVASELNEVIQIV 864

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              M  A      L +PL V+  V  +WQ+ 
Sbjct: 865 TDVMSGAA----ELSLPLDVSFGVGASWQDA 891


>gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 911

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/991 (30%), Positives = 496/991 (50%), Gaps = 97/991 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+K     L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + +    +
Sbjct: 1   MKKA---VLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPD----Y 51

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            A  FD    +  R EIY DYK+NR   PE L+ Q+P +  A +AF I   +I+G+EADD
Sbjct: 52  MAAAFDVKRSSLKRTEIYSDYKSNRQSAPEDLIKQIPRIEEALEAFNINRYKIEGYEADD 111

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKW 172
           ++ +      K+   V I++ DKDL QLV     +    K  +          + V+   
Sbjct: 112 VLGSLAKKLAKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGTLKTSDDVVNYL 171

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QK 227
           G+ PEK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K       
Sbjct: 172 GVVPEKIPDLFGLIGDKSDGIPGVTKIGEKKALSIFSQYDSLEKIYENIDNLKSIDGIGP 231

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
              +N++   + A +SR+L  + T++ IT+  + L     +  +L S  K LEF   I +
Sbjct: 232 SLIKNLINEKDIAFMSRELAKIFTNLDITVEEDGLQY-GMDREKLYSLCKVLEFKMFIKK 290

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +      +     P +  I   E K                               +++P
Sbjct: 291 LG----LEEKPQNPTLFSIENLEEK-------------------------------KESP 315

Query: 348 QKLFLERLQKLSQYPINNDSYTK--IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           + +  E ++   +  ++  +     I N  ++ +  + L      +         + + +
Sbjct: 316 KIVEEENIEFTKEINLDLSNRELLIIDNENNLNEQKEYLTNYKKIA---------SIYYE 366

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + I +ST D   D  F +                 KN     ++ ++ +         I
Sbjct: 367 GLGIILSTED--KDFYFPLNHGG----------LLAKNIDRNLVVKFISEL----DIKFI 410

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
            +N K     L   GIS +     M+++Y L S ++  D      ++     K+  K+  
Sbjct: 411 SYNFK----ALLNLGISFKSMYMDMMIAYHLISSQTKIDPIIPITEYSKLEPKDF-KTAF 465

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             + ++ I+     ++  + S  IL ++  L   L  E L  +    + P+I V+S ME 
Sbjct: 466 GKVNVELITAQDFSKYLSDISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMER 525

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KT
Sbjct: 526 KGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 585

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T    LE +      I + +L++R+L+K+K+TY D+LP  +++   R+HT ++ 
Sbjct: 586 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDE-NSRIHTSFNQ 643

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S EPNLQNIP+KTD G KIR  FI+   K L+S DYSQ+ELR+L  ++K  
Sbjct: 644 IGTATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDE 703

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + +    D+H + A  IF +   + VS + R  AK INFSIIYG +PF LA +L+IP
Sbjct: 704 NLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 763

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             +A++YIK+YF ++P +  + ++   F  ++GYV+T+FGR+ +   I+S   +I++  E
Sbjct: 764 VKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 823

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N  IQG+AA++ ++ M+ V+  L+D +    +LLQ+HDEL+FEV +  +   S I+
Sbjct: 824 RMAVNTVIQGTAAEVLKKVMVKVYDILKDKE-DIALLLQVHDELIFEVEKNSVEKYSGIL 882

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              M+     +    V L +NI +  NW E 
Sbjct: 883 ADIMKNTVQLE---DVKLNININIGKNWAEA 910


>gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346]
          Length = 882

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/990 (29%), Positives = 469/990 (47%), Gaps = 124/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L LVDG+S  +RAF+A        +  +GL  NAI  F NM   ++Q      +
Sbjct: 1   MTKK-KLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKE----M 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ 
Sbjct: 116 DDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L                          G+  + +   ++I +K   + 
Sbjct: 176 GLTPKQIIDMKGLA-------------------------GDTSDNIPGVTKIGEKTAIKL 210

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           + +Y                          + E+ +  +     + L   K    ++   
Sbjct: 211 LKQYGSV---------------------EGVYENIDEMKKSKMKENLINDKEQAFLSKRL 249

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                N  PV +++     +G  +E  +     +   QF       +K++  + P     
Sbjct: 250 ATIEVN-APVEVNVEDLAYEGKDLEKLVPFYKEMDFKQF------LAKLDITEEP----- 297

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                     + +  +  + +    + +   +      +  +     +   S  +   ++
Sbjct: 298 --------VEMEDILFEVVEDQLTNEMFTDDM------ALYVEMMEDNYHTSPIVG--LA 341

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             + K   +     +F                           +  +E   K  ++ K  
Sbjct: 342 WGNNKKIYTTNNLAVFES--------------------QPFIDWLMDETRKKNVYDAKRT 381

Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        K  K  
Sbjct: 382 YVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKG 441

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P D+        H       I  L   L  +L  +    ++ +++ P+  ++  MEITG
Sbjct: 442 LPEDE---EVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILGDMEITG 498

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 499 IRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 558

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+ +IL +RQ++KI+STY + L   I    + +HT Y    
Sbjct: 559 GY--STAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNK-IHTRYVQTL 615

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+    
Sbjct: 616 TQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEH 675

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 676 LKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITR 735

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++R+  ER
Sbjct: 736 EQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAER 795

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN PIQGSAADI + AMI +   L++ KL   MLLQ+HDELVFEVPE E+   +Q++ 
Sbjct: 796 TAINTPIQGSAADILKIAMIEMAHRLKEEKLQATMLLQVHDELVFEVPESELEQLNQLVK 855

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             ME A    ++L VPL  +      W E 
Sbjct: 856 EVMEHA----VSLHVPLITDSSWGKTWYEA 881


>gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
 gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
          Length = 1025

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/1020 (27%), Positives = 488/1020 (47%), Gaps = 63/1020 (6%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             ++  L +VDG S  +RAF+A    +     G   N+I GF  ML ++++  + +     
Sbjct: 15   NEKGTLLVVDGHSLAFRAFFAISADNFSTRSGQATNSIWGFITMLSQVVKKEKPDR---- 70

Query: 61   FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             A+ FD    TFRN + P YK  R   P+ LL QLP+++   +A G+  IE  G+E DD+
Sbjct: 71   LAIAFDVKGGTFRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGVTYIEKPGYEGDDV 130

Query: 121  IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
            I T   +    G+   ++S D+D  QL+     +    +     +++D   V +K+ + P
Sbjct: 131  IGTLAVMGSNAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFKDLKEMDKNAVYEKYHVTP 190

Query: 177  EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++   L AL G++ DNIPG+PG+G   AA  + ++G+LENI+ +++ I  KK  E + E 
Sbjct: 191  KQYPDLAALRGETADNIPGVPGVGDGYAAKWINQFGSLENIIEHSNEISGKK-GEALREN 249

Query: 237  AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-VATTYDCD 295
             +  RL+RK+  L  D+ + + ++ L   D +  +L   L  LEF +L  R +  T+   
Sbjct: 250  IDQVRLNRKVNALVCDLDLGVTVDDLCFGDVDAAKLGILLSQLEFGELKKRKILKTF--- 306

Query: 296  AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             +N     ++ N         E + + D   +++Q +  ++   ++ +      +     
Sbjct: 307  -SNGMQQSIENNMRIMFSSTYEGDANDDKLAQSAQSNIDAENFQEMLAGIDLHHVKTVED 365

Query: 356  QKLSQYPINNDSYTKIV-----NTKDIQQWVQKLETIGSA-SFKIITDT-------MDAF 402
                +  +++  YTKI            Q   + E      S KII ++       +   
Sbjct: 366  FIDWENSVSSLLYTKIKKDSKNTEDTFDQVSSEEENFEELNSEKIINNSRKCAEPILKNQ 425

Query: 403  HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
                 A   +   +          I +  +      +T   +  + +L  L+KF +    
Sbjct: 426  EVVIYAHECNKNSKHHFELIADCLIILIANKAAILYTTDLQSSDQALLEMLRKFLQKNSS 485

Query: 463  LKIGHNIKYDKLVLHRYGISMRG------FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
            + + H+ K    +L    +            D  L SY+L+    +  + ++A+ +L   
Sbjct: 486  ITVLHDYKKHLGLLKSLKLFDSNNSFGTPLLDTRLASYLLEPDFRAETLENMAEHYLDIQ 545

Query: 517  RKE--ILKSRKSSIPIDKISDSQV---------------QEHAIENSNVILQLWLLLRPK 559
              E  + ++      +D + D++V               +   ++ + +I  L L     
Sbjct: 546  SVEDNLGENEAKQGELDLLIDNEVSSSEEETNEKQTQAREAKFLKTALLIRLLALHFAST 605

Query: 560  LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
            L   K   +   L+ P+  V+  ME  G  +D   L  +  + S +    +   + ++G 
Sbjct: 606  LDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSGMLKQFSADAEFAQNMAWKVAGS 665

Query: 620  KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP------IIKNILE 673
              NL SPKQL  ILF         +TK G + T A+ L+ +    +P       +  +L+
Sbjct: 666  SVNLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLK 725

Query: 674  WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
             R+ +K+K     SL +  +   +R+HT +      TGRL+S +PNLQNIP +   G++I
Sbjct: 726  HRETNKLK-QIVQSLIDAAHYDDRRIHTTFEQTIAATGRLSSADPNLQNIPNRNAAGREI 784

Query: 734  RRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
            R AFI     + L+S DYSQ+ELRI+AH +    L + F + +D H+ VA+ ++ + +E+
Sbjct: 785  RAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQ 844

Query: 793  VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
            V+P  R H K +++ + YG+S + LA QL I  +EA     +YF  F  +H+Y+E   + 
Sbjct: 845  VTPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPAEAEMLKNKYFDTFGNVHDYLESLVSK 904

Query: 853  VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
             ++ GY ET+FGRR ++ +++S   + R   ER A+NAPIQG+AADI + AM+ V   L 
Sbjct: 905  AKELGYTETMFGRRRYFPQLSSNNRASREAAERGALNAPIQGTAADIMKLAMLRVDLGLR 964

Query: 913  DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            + K+ ++++LQIHDEL+ E+   E      I+  +ME A    ++L VPL V+  V  +W
Sbjct: 965  EAKVRSRVILQIHDELILEISHGEQAQVENIVRKAMENA----VHLDVPLSVSTGVGVDW 1020


>gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 914

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/991 (30%), Positives = 491/991 (49%), Gaps = 94/991 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+K     L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + +    +
Sbjct: 1   MKKA---VLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPD----Y 51

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            A  FD    +  R EIY DYK+NR   PE L+ Q+P +     AF I   +I+G+EADD
Sbjct: 52  MAAAFDVKRSSLKRTEIYSDYKSNRQSAPEDLITQIPRIEEVLDAFNINRYKIEGYEADD 111

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDI----EHVIKKW 172
           ++ +      K+   V I++ DKDL QLV     +    K    EK       + V+   
Sbjct: 112 VLGSLAKKLAKQDIEVIIVTGDKDLSQLVEKNITVALLGKGAEGEKFGTLKNSDDVVNYL 171

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QK 227
           G+ PEK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K       
Sbjct: 172 GVVPEKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYENIDNLKSIDGIGP 231

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
              +N++   + A +SR+L  + T++ I +    L     +  RL S  KALEF   I +
Sbjct: 232 SLIKNLINEKDIAFMSRELAKIFTNLDIDVEESGLQY-GMDRERLYSLCKALEFKMFIKK 290

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +                                  +   +     S  +   K +S +  
Sbjct: 291 LGL--------------------------------EEKPQNPTLFSSENVGEKKDSTKVV 318

Query: 348 QKLFLERLQKLSQYPIN--NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           ++   E ++   +  ++  N     I +   + +  + L      +         + + +
Sbjct: 319 EETINEEIEFTKEVNLSLTNRQVLIIDSESSLNEQKEYLANYKKIA---------SIYYE 369

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + I IST D+           +  L+            L    +S L           I
Sbjct: 370 SLGIIISTEDKD---------FYFPLNHGGLLAKNIDKNLVVNFISQL-------DIKFI 413

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
            +N K     L   GIS +     M+++Y L S ++  D      ++     K+  K+  
Sbjct: 414 SYNFK----ALLNLGISFKSMYMDMMIAYHLISSQTKIDPIIAITEYSKLEPKDF-KATF 468

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             + ++ I+     ++  + S  IL ++  L   L  E L  V    + P+I V+S ME 
Sbjct: 469 GKVNVELITTQDFSKYLSDISIGILAIYDELNYLLKKEDLYKVLMENEMPLIPVLSLMER 528

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF K+  PSG KT
Sbjct: 529 KGIEIDVQYFKNYSVELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKMNLPSGKKT 588

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T    LE +      I + +L++R+L+K+K+TY D+LP  +++   R+HT ++ 
Sbjct: 589 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDE-NSRIHTSFNQ 646

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S +PNLQNIP+KTD G KIR  FI+   K L+S DYSQ+ELR+L  ++K  
Sbjct: 647 IGTATGRLSSSDPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDE 706

Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + +    D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP
Sbjct: 707 NLIEAYREEKDLHDLTARRIFNLADSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 766

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             +A++YIK+YF ++P +  + ++   F  ++GYV+T+FGR+ +   I+S   +I++  E
Sbjct: 767 VKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 826

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N  IQG+AA++ ++ M+ V+  L+D +    +LLQ+HDEL+FEV +  +   S+I+
Sbjct: 827 RMAVNTVIQGTAAEVLKKVMVKVYDVLKDKE-DIALLLQVHDELIFEVEKSSVEKYSEIL 885

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              M+     +    V L +NI +  NW E 
Sbjct: 886 ADIMKNTVQLE---DVKLNININIGKNWAEA 913


>gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104]
 gi|332204058|gb|EGJ18123.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47901]
          Length = 877

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/987 (32%), Positives = 475/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q      Q   ++S    + L    +
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAEGLDFTIV 306

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            ++SQ  ++ +S                        F       +      +  A S  D
Sbjct: 307 DQISQDMLSEES-----------------------IFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYMQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/975 (33%), Positives = 485/975 (49%), Gaps = 145/975 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++DGSS IYR +YA P L  K +G   NA+ GF  +L K +++ + +       + 
Sbjct: 19  KKILVIDGSSIIYRVYYALPPLKTK-NGELTNALYGFIRILLKAVEDFKPDL----LGIA 73

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+ IY +YKA RP + + L  Q+P +R   +   IP +E  G+EADDIIAT 
Sbjct: 74  FDRPEPTFRHVIYKEYKAKRPPMKDDLKAQIPWIREFLRLNDIPILEEPGYEADDIIATI 133

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
               + +     I+S D DL+QLVS  T L    +        D + V +++G+ P+K+ 
Sbjct: 134 IKRYKDD--LKYILSGDLDLLQLVSDKTFLIHPQRGITEFTIYDPKAVKERFGVEPKKIP 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             + L GD  DNIPGI GIG K A+ +L++                      + E+ +  
Sbjct: 192 LYKVLVGDESDNIPGINGIGPKKASKILEKIST-------------------LEEFKDKV 232

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           R             +   L  +I ++ +   +I     L   K I++       +    E
Sbjct: 233 RF------------LESDLREIIEKNWD---IIERNLELVTLKNIDKDFVLKPFEIKKDE 277

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            ++  +   E K I  +                             P     E ++    
Sbjct: 278 KLIEFLKRYELKSILQKLF---------------------------PDLEERENIEIKDV 310

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             IN                 ++ +  G  +FK +             I+IS  + +   
Sbjct: 311 KEINF----------------EEAKKEGCFAFKCL------GEKGFEGISISFKEGEG-- 346

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
            F     F D                 E+   +K     E+  KIG  I+ D   L    
Sbjct: 347 YFIASFDFND-----------------EVKGKVKDIISFENIKKIGAYIQRDLHFL---D 386

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
             ++G   D+ L SY+L+  R +H +  + +++L+ T         S IP         Q
Sbjct: 387 CKIKGEVFDVSLASYLLNPERQNHSLDILIREYLNRT---------SFIP---------Q 428

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A      +  L  +L  ++  E+L  V   ++ P+I V+  ME  GI++D++ LK +S
Sbjct: 429 KYAA----YLFPLKTILEERIKKEELEFVLFNIETPLIPVLYSMEKWGIKVDKEYLKSLS 484

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E  + +  LEE IY+L+G KFNL+SPKQL ++LF +LK PSG K KTG   +T+  + Q
Sbjct: 485 DEFCERIKKLEEEIYELAGMKFNLNSPKQLSEVLFERLKLPSGKKGKTGY--STSSLVLQ 542

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                +PI+  IL++R+L K+KSTY D++PN IN +T RVHT ++   T TGR++S EPN
Sbjct: 543 NLLNAHPIVIKILQYRELYKLKSTYIDAIPNLINSQTGRVHTKFNPTGTATGRISSSEPN 602

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPIK++ G+KIRRAFI+      +S DYSQIELRI+AH+++   L   F+   DIHR
Sbjct: 603 LQNIPIKSEEGRKIRRAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHR 662

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AAEIFGV  ++V   +R  AK +NF IIYGIS F L+    I   EA  +I  YF  +
Sbjct: 663 RTAAEIFGVPEDEVDDLLRSRAKAVNFGIIYGISSFGLSETASITPEEAEKFIDSYFKHY 722

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +  +I+KT    R+  YV+T+FGR+ +  EI S    +RN  ER AINAPIQG+AADI
Sbjct: 723 PRVKLFIDKTIYEAREKLYVKTLFGRKRYIPEIRSINKQVRNAYERIAINAPIQGTAADI 782

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI ++K +E+  L +++LLQIHDEL+ EVPEEE+     +    MEK     + L 
Sbjct: 783 IKLAMIEIYKEIEEKNLKSRILLQIHDELILEVPEEEMEFTPLMAKEKMEKV----VELS 838

Query: 960 VPLKVNIKVSNNWQE 974
           VPL V I V  N  E
Sbjct: 839 VPLVVEISVGKNLAE 853


>gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus]
          Length = 889

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/980 (27%), Positives = 470/980 (47%), Gaps = 115/980 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  L L+DG S  +RAFYA P+ +     G   NA+ GF +ML  ++     ++    
Sbjct: 13  TNQPRLLLIDGHSMAFRAFYALPVDNLSTSGGQHTNAVYGFLSMLSNIVAEEAPDA---- 68

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR E++PDYKA R   PE    Q+ L+R   +  GI  +  + FEADDI
Sbjct: 69  IAVAFDVGRKTFRTEMFPDYKAQREAAPEEFKGQVDLIREVLEVLGITTLSRENFEADDI 128

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           +AT    A  + +   I++ D+D +QLV+ +T +   +K      +     V +K+G+ P
Sbjct: 129 LATLATEA--QDYETLIVTGDRDYLQLVNESTTVLYPMKGVSTLHRFTPSAVEEKYGLTP 186

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIP +G KTA   + +YG+L                 +++E+
Sbjct: 187 AQYPDFAALRGDPSDNLPGIPKVGEKTATKWIVKYGDL----------------ASLVEH 230

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           AE                          +   G      ++ ++  + + ++ T  D + 
Sbjct: 231 AEEI------------------------KGVVGNNFRERIEQVQMNRKLTQMITDMDLEV 266

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +    +    +    A   +++  T+++    +++ +  ++   +    +       
Sbjct: 267 GPNDLAFKEAKVADV--AAKFDDLEFGTSLRDRVLAAIPNDGAEAAEQAEEVQEL----- 319

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         +++ + + QW   L      +  +  +  +       AIA      
Sbjct: 320 ------------ETVIDDEPLSQW---LPGREHVAVYVQGEG-NPGQGDASAIAF----- 358

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                       +D   H  Q   G   L+ E    L ++  ++   K  H  K    +L
Sbjct: 359 ------------VDQERHGLQVELGD--LSAEDDKALAQWLASDT-PKYFHEAKAAFHML 403

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              GI + G   D  L +Y+L  G+ ++ +A + Q+ L     + L +    + +   S 
Sbjct: 404 AGRGIELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQ----KTLSAATEQLSLLDNSS 459

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  ++ +  I++L   L  +L       +Y  L+ P++ ++++ME TGI +D D+L
Sbjct: 460 ------LVDQAAAIMELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDIL 513

Query: 596 KQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           +       + +   E    +L+G+ K NL+SPKQL  +LF   + P   KTKTG      
Sbjct: 514 ETQKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAK 573

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +  +      +P + ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+
Sbjct: 574 EIEQLAAKNPHPFLDHLLAHRKYQKMKTTL-EGLIKTVQPDG-RIHTTFNQTVASTGRLS 631

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP++T+ G++IR AFI      +L++ADYSQIE+R++AH++    L + ++ 
Sbjct: 632 STEPNLQNIPVRTEAGRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKE 691

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  V + +F V +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++
Sbjct: 692 GEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIME 751

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +Y+++     R++GY  T+FGRR +  E+NS     R   ERAA+NAPIQ
Sbjct: 752 SYFERFGGVKKYLDEVVAQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQ 811

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI V ++L+   + +++LLQ+HDELV EV   E     +I+   M+ A  
Sbjct: 812 GTAADIIKVAMIRVDRALQ--GMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSA-- 867

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             I L VPL+V+     +W 
Sbjct: 868 --IELNVPLEVSAGAGKDWD 885


>gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200]
          Length = 877

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/987 (32%), Positives = 474/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 289

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   ++      IV+        ++      + F       +      +  A S  D
Sbjct: 290 LNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
 gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
          Length = 900

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/980 (29%), Positives = 470/980 (47%), Gaps = 93/980 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  +  + ++D   F++R+FYA P L +  DG P   + GF N     + N  K+    +
Sbjct: 6   LSAKKTITVIDTFGFLFRSFYALPPL-KSKDGFPTGLLTGFMNF----ISNIGKDFQTDY 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                D    TFRN IY  YK++RP +PE LL QLP+     +  G       GFEADD+
Sbjct: 61  IVFALDSKGDTFRNAIYDQYKSHRPDVPEDLLKQLPVAISWIEEMGFKTAIKSGFEADDL 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEHVIKKWGIPPEKM 179
           IA+  + A ++   V I+S DKDL QL+   T   +D +K+  I+ E   +K+G+ P + 
Sbjct: 121 IASIAHDARQKDLEVRIVSHDKDLYQLIDDDTVYLFDPIKKIIINEEKCYEKYGVHPNQF 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              Q+L GDS DN+PG+ G+G KTA  L++E+G LENI  N   + + + +  +LE    
Sbjct: 181 TDYQSLLGDSADNVPGVKGVGAKTAEALIKEFGTLENIYENIESVSKPRWKTLLLEN--- 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                                K + F                  
Sbjct: 238 -------------------------------------KEMAFIS---------------- 244

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           + +V             + E+ ++  I   Q +      +KI  E+  Q     + Q   
Sbjct: 245 KELVTLKKDCHCIDFLDQFELPKENPILKIQDTLAKYDLTKIV-ERVHQNGLNYKTQMPK 303

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I    YT +   + +++ +  +      +F   T ++D   +K +  +    +    
Sbjct: 304 AKEIIKYDYTLLDTKEKLEKVINSIPKNSIVAFDTETTSLDTKIAKIVGFSFCFNENS-- 361

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-R 478
                   +I ++         +    ++  S + K     +F  I  N KYD  ++   
Sbjct: 362 ------AYYIPIAHSYL--GAPEQVSIEDAKSAINKL---NNFKLIVQNFKYDFDIIKFN 410

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           + I +  F D ++++++LDS  S   + ++A+ +  +T        K       +  S  
Sbjct: 411 FDIELNLFADTIILAWLLDSS-SKVGLDALAKNYFDHTMIAFKDVVKKGDDFSTVDISNA 469

Query: 539 QEHAIENSNVILQLWLLLRPKLIV---EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             +A E++ +  +++  L  +      E LL +    +   IDV+  M+  G++ID  +L
Sbjct: 470 CNYAAEDALMTYKIYFKLLEEFKKQNCEHLLKIANDYEFKFIDVLINMQNNGVKIDTQIL 529

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K +  +  + +  L + I++L+G KFN++SPKQLG ILF  L   +  K KTG   +T +
Sbjct: 530 KNLKIQNQEYIQELTKKIHELAGTKFNINSPKQLGVILFENLGLTASKKGKTGY--STNE 587

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI-NKRTQRVHTFYSLASTMTGRLA 714
            +       + II  IL++R+  K++STY + L     N    +++T +    T TGRL+
Sbjct: 588 VVLNKLVDSHEIIPVILDYREAYKLQSTYIEPLLELASNDSENKIYTSFLQTGTATGRLS 647

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIP+K+  G++IR+AFI+    KL+  DYSQIELR+LAH +K   L   F + 
Sbjct: 648 SKNPNLQNIPVKSSAGREIRKAFIARDGYKLVGIDYSQIELRLLAHFSKDKALVDAFNSD 707

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           LDIH   A +IFG   E+ + Q R  AKTINF ++YG+   +LA  L+I   EA  YI  
Sbjct: 708 LDIHSQTAVKIFG---EEKASQKRNIAKTINFGLLYGMGSKKLADTLKITPKEAKVYIDS 764

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  F  + EY++  ++F  +NGYVET+  RR  +D  N+  +  R    R A+N   QG
Sbjct: 765 YFEAFTNVKEYMKSIEDFALENGYVETLIKRRRIFD-FNAANTMQRIGYLREAVNTKFQG 823

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + +MI + +  ++++   KM+LQIHDEL+FEV  E+    +  +   ME     
Sbjct: 824 SAADLIKLSMIKIFEKYKNNE-DLKMILQIHDELIFEVKNEKQDEITNDLKKIMEN---- 878

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L +PLKV++ V N+W +
Sbjct: 879 IFTLEIPLKVSVAVGNSWGD 898


>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 874

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/975 (30%), Positives = 464/975 (47%), Gaps = 117/975 (12%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DGSS  +RAFYA   L     G+  NA+ GF  ML KLL    KE   +   + FD  
Sbjct: 8   VIDGSSLFFRAFYAL-QLPPNARGIHTNAVHGFAMMLVKLL----KELSPTQIVIAFDRS 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR  +YPDYK  R K PE L+ Q+PL++   +A GI  +E+  +EADDII T    A
Sbjct: 63  RTTFRTALYPDYKGTRDKTPEELIAQIPLLKELAEALGISFLELDDYEADDIIGTLAVQA 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184
             EG    +I+ D+D +QL+ P   +  T K     +  D     +++G PP +++ ++ 
Sbjct: 123 AAEGVETRVITGDRDALQLIRPQLTVLLTKKGISETKAYDTAAFEEEYGFPPIRLIDMKG 182

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PG+G KTA  LL  Y  +EN+L +A+ +  KK             LS 
Sbjct: 183 LMGDSSDNIPGVPGVGPKTATKLLLAYETIENVLDHATEVSGKK-------------LST 229

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L   R    ++   + L   +C+ P L                   YD +A  ++P   
Sbjct: 230 SLAKYRAQALLS---KQLATIECHVPELR------------------YDAEAFRMQPDRA 268

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            +    +              +  ++  + +     +  E  P                 
Sbjct: 269 ALEAFCHAYELRTVGRALSEYLGAAETPASAAAQQSLFGETAPAADLTAAEF-------- 320

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                           +  L T   A+   +      F  K  A+A+    ++   S   
Sbjct: 321 ------------CDADMALLRTAEKAAVGGVFAGTPPFV-KITALALVVDGERRIASASS 367

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                                   IL+ L +            N K            ++
Sbjct: 368 PHF-------------------AAILACLAE------RSVTLWNAKRYVQA------GLQ 396

Query: 485 G---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           G     D+ L  Y+L    S  DIA  A  +L            ++   + +S      +
Sbjct: 397 GTAQVFDLELADYLLHPEESRRDIARAAFAFLG-----------TATSAEGLSSE---AY 442

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A+  + +  +L  ++  +L  + L+ +Y  ++ P++ V++ ME TG+ +D+  L++  A 
Sbjct: 443 AVREALLGARLQPVMETELAAQGLMQLYRTVELPLVPVLAAMEQTGVYVDRAALERERAA 502

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            ++ + +L   I+ L+G +FN+SSPKQLG+ILF  L   SG   KT    +T  +  +  
Sbjct: 503 ATERINALAREIHTLAGAEFNISSPKQLGEILFEHLGLGSGKVKKTKTGYSTNAETLEGL 562

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              +PII N+L +R  +K++STY D +   I   T RVHT ++   T TGRL+S +PNLQ
Sbjct: 563 RDQHPIIDNVLTYRMWTKLRSTYLDGIGALIRPATGRVHTSFNQTVTATGRLSSSDPNLQ 622

Query: 722 NIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIP++T+ G+ +R  F        L+SADYSQIELRILAH++    L   F +  DIH  
Sbjct: 623 NIPVRTEEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRHGQDIHAR 682

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV ++ V+P+ RR AK +NF I+YG+S F LA  L I R EA  YI RYF R+ 
Sbjct: 683 TAAEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYH 742

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  +++K       NGYV T++GRR     + S     R+  ER A+N PIQG+AAD+ 
Sbjct: 743 GVRTFLDKIVADAHTNGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLI 802

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+  + +L+   + +++LLQ+HDELV EV  EE  T ++++  +M  A      L V
Sbjct: 803 KIAMVRAYDALQAADVKSRILLQVHDELVMEVTAEETETVTELLRTAMSGAA----ELAV 858

Query: 961 PLKVNIKVSNNWQEE 975
           PL V++ V  NW E 
Sbjct: 859 PLAVDVHVGKNWAEA 873


>gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334]
 gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334]
          Length = 889

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/990 (32%), Positives = 473/990 (47%), Gaps = 132/990 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 14  DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 69

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 70  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGICHYELAQYEADD 129

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    +++++K GI 
Sbjct: 130 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGIT 189

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+                          +I +K   + +LE
Sbjct: 190 PTQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGIKLLLE 224

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVATTY 292
           +                      LE +  E+ +G +     + L   +    +++   T 
Sbjct: 225 HG--------------------SLEGI-YENIDGMKASKMKENLIHDKEQAFLSKTLATI 263

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + +      G  +E        +   Q     + +S   +E        
Sbjct: 264 DTKA----PIEIGLEDLVYSGPDVENLGKFYDEMGFKQLKQALNVSSADVAES------- 312

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                              ++   + Q  Q +    S  F       +   +  +  A S
Sbjct: 313 -------------------LDFTIVDQVCQDMLNEESI-FHFELFGENYHTADLVGFAWS 352

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             D+                      +T K  L +E     K F E        ++ K  
Sbjct: 353 CGDK--------------------LYATDKLELLQE--PIFKDFLE--KTPLRVYDFKKA 388

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
           K++LHR+G+ ++    D  L  Y+L S    ++IA+IA  +      +      K  K +
Sbjct: 389 KVLLHRFGLDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKA 447

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P       +  EH      V+++   +L  KL     L +   +++P+  V+++MEI G
Sbjct: 448 LP----EREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAG 503

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT
Sbjct: 504 ITVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKT 563

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    
Sbjct: 564 KTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDL 622

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   
Sbjct: 623 TQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEH 682

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+  L I R
Sbjct: 683 LIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISR 742

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER
Sbjct: 743 KEAKSYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAER 802

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++ 
Sbjct: 803 TAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVK 862

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPL  +      W E 
Sbjct: 863 QTMEEA----IQLSVPLIADENEGATWYEA 888


>gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
 gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
          Length = 877

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/987 (32%), Positives = 474/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELMDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 289

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   ++      IV+        ++      + F       +      +  A S  D
Sbjct: 290 LNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397]
 gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397]
          Length = 877

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/987 (32%), Positives = 474/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLNHMGIRHYDLAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 289

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   ++      IV+        ++      + F       +      +  A S  D
Sbjct: 290 LNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 1015

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/1010 (27%), Positives = 488/1010 (48%), Gaps = 53/1010 (5%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             ++  L +VDG S  +RAF+A    +     G   N+I GF  ML ++++  + +     
Sbjct: 15   NEKGTLLVVDGHSLAFRAFFAISADNFSTRSGQATNSIWGFITMLSQVVKKEKPDR---- 70

Query: 61   FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             A+ FD    TFRN + P YK  R   P+ LL QLP+++   +A G+  IE  G+E DD+
Sbjct: 71   LAIAFDVKGGTFRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGVTYIEKPGYEGDDV 130

Query: 121  IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
            I T   +    G+   ++S D+D  QL+     +    +     +K+D   V +K+ + P
Sbjct: 131  IGTLAVMGSNAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFKDLKKMDKNAVYEKYHVTP 190

Query: 177  EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++   L AL G++ DNIPG+PG+G   AA  + ++G+LENI+ +++ I  KK  E + E 
Sbjct: 191  KQYPDLAALRGETADNIPGVPGVGDGYAAKWINQFGSLENIIEHSNEISGKK-GEALREN 249

Query: 237  AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-VATTYDCD 295
             +  RL+RK+  L  D+ + + ++ L   D +  +L   L  LEF +L  R +  T+   
Sbjct: 250  IDQVRLNRKVNALVCDLDLGVTVDDLCFGDVDAVKLGILLSQLEFGELKKRKILKTF--- 306

Query: 296  AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             +N     ++ N         E + + D   +++Q +  ++   ++ +      +     
Sbjct: 307  -SNGMQQSIENNMRIMFSSTYEGDANNDKLAQSAQSNIDAENFQEMLAGIDLHHVKTVED 365

Query: 356  QKLSQYPINNDSYTKIV-NTKDIQQWVQKLETIGSA--SFKIITDTMDAFHSKPIAIAIS 412
                +  +++  YTKI  ++K+ +   ++L +      S K     +        A   +
Sbjct: 366  FIDWENSVSSLLYTKIKKDSKNTEDTFEELNSEKIINNSRKCAEPILKNQEVVIYAHECN 425

Query: 413  TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
               +          I +  +      +T   +  + +L  L+KF +    + + H+ K  
Sbjct: 426  KNSKHHFELIADCLIILIANKAAILYTTDLQSSDQALLEMLRKFLQKNSSITVLHDYKKH 485

Query: 473  KLVLHRYGISMRG------FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSR 524
              +L    +            D  L SY+L+    +  + ++A+ +L     E  + ++ 
Sbjct: 486  LGLLKSLKLFDSNNSFGTPLLDTRLASYLLEPDFRAETLENMAEHYLDIQSDEDNLGENE 545

Query: 525  KSSIPIDKISDS----------QVQEHAIE-----NSNVILQLWLLLRPKLIVEKLLHVY 569
                 +D + D           + Q  A E      + +I  L L     L   K   + 
Sbjct: 546  AKQGELDLLIDDGMPASEEETNEKQTQACEAKFLRTTLLIRLLALHFASTLDDRKQTGLM 605

Query: 570  ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
              L+ P+  V+  ME  G  +D   L  +  + S +    +   + ++G   NL SPKQL
Sbjct: 606  TDLEMPISRVLRGMEDVGAAVDMQRLSSMLKQFSADAEFAQNMAWKVAGSSVNLQSPKQL 665

Query: 630  GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKST 683
              ILF         +TK G + T A+ L+ +    +P       +  +L+ R+ +K+K  
Sbjct: 666  QQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLK-Q 724

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPT 742
               SL +  +   +R+HT +      TGRL+S +PNLQNIP +   G++IR AFI     
Sbjct: 725  IVQSLIDAAHYDDRRIHTTFEQTIAATGRLSSADPNLQNIPNRNAAGREIRAAFIPGEEF 784

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            + L+S DYSQ+ELRI+AH +    L + F + +D H+ VA+ ++ + +E+VSP  R H K
Sbjct: 785  EYLMSCDYSQVELRIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVK 844

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             +++ + YG+S + LA QL I  +EA     +YF  F  +H+Y+E   +  ++ GY ET+
Sbjct: 845  AMSYGLAYGLSTYGLAKQLSISPAEAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETM 904

Query: 863  FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            FGRR ++ +++S   + R   ER A+NAPIQG+AADI + AM+ V   L + K+ ++++L
Sbjct: 905  FGRRRYFPQLSSNNRASREAAERGALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVIL 964

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            QIHDEL+ E+   E      I+  +ME A    ++L VPL V+  V  +W
Sbjct: 965  QIHDELILEISHGEQAQVENIVRKAMENA----VHLDVPLNVSTGVGVDW 1010


>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
          Length = 1015

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/1041 (27%), Positives = 462/1041 (44%), Gaps = 104/1041 (9%)

Query: 4    ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            +  L+L+DGS+FI+R FYA   + R  DG P NA+     +L +LL+  +      HFA 
Sbjct: 11   QEPLWLMDGSAFIFRGFYAFQNMQR-SDGFPTNALFIVTRILLRLLREEKPR----HFAF 65

Query: 64   IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            + D    TFR++++P YKA R   PE L+ QL  +R    A G+P     G EADD IA+
Sbjct: 66   VLDGKGPTFRHDLFPLYKAQRAATPEPLVQQLEPIRRMVTALGLPLEVSDGCEADDCIAS 125

Query: 124  YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT-VKEEKID-IEHVIKKWGIPPEKMVC 181
                   E   V II  DKDL Q + P   L+D   KEEK+  +     + G+ P +   
Sbjct: 126  LAARYRDE-RPVVIIGADKDLKQCLHPNVVLWDPGAKEEKLTTLASFTAETGLTPAQWPD 184

Query: 182  LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +QA+ GD+ DNIPGIPG+G KTA+ +  ++  LE+I     R+     ++   ++ +   
Sbjct: 185  VQAVIGDTSDNIPGIPGVGPKTASKIFADFPTLEDIRDGFDRLPPN-LQKKFEQHLDAMF 243

Query: 242  LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA----TTYDCDAA 297
            L R+L  L  D    +  E L ++  +     +FL+  E   L   +A      +   A 
Sbjct: 244  LYRQLTTLAIDRCADLTPERLSVQPLDARTASTFLQEFELRALSRELAGMVRNGHVQVAL 303

Query: 298  NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL-------SDQTSKINSEQTPQ-- 348
              +              A  T    D+    S F          +D   + ++E TP   
Sbjct: 304  PGDASAPMDTGAMAAPAAPSTPRPSDSGTPGSLFGEGGVPLPWDTDDAPRNDAEHTPAGA 363

Query: 349  ----------------------------------------KLFLERLQKLSQYPINNDSY 368
                                                    K   E     +       + 
Sbjct: 364  TGAGGTLRGMPGTHTSQDDATAPAEAASRETGSPPAQSAIKAAPEAATDDASAKSAKGAK 423

Query: 369  TKIVNTKDIQQWVQK--LETIGSASFKIITDTMDAFHSKPI-AIAISTLDQKDDTSFKVE 425
                     +  +Q+  L    +     +    D     P     I+ +    D +    
Sbjct: 424  PVSEAQARKRALIQQASLFDQSTRRNDTVATCTDPRGLPPCQGRDIAVVPLCGDAARTCP 483

Query: 426  TIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHR-- 478
             +    +  TS  +        E+     +  L +   +   +        D   L R  
Sbjct: 484  PVSGTQNGSTSPVAFAVAVAGCEVQYSGPVQGLARHLASAKRI-----ATPDVKALLRSH 538

Query: 479  ---YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
                 I    + D+ L +Y+LD     +    +A +W     +                 
Sbjct: 539  AIWRDIPGDRWFDLGLAAYLLDPEERDYGWPRLAARWGDMLDRSTDNPG----------- 587

Query: 536  SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                        + L++   +  +L    L  +   L+ P++ V++ ME  GI +D+   
Sbjct: 588  -----------LLALEMAQGMAGRLAGASLDTLMRTLELPLVPVLADMEEAGIAVDRTAF 636

Query: 596  KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
                 E+   L  + + +Y  +G +FN+ S +QLG++LF  L  P+  KT+ GQ   T+Q
Sbjct: 637  AAFLDEVQHELDRITQEVYKAAGGQFNIRSAQQLGELLFGTLGLPTVGKTRGGQAT-TSQ 695

Query: 656  DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            D  +   G +P++  IL++R+L K++STY + LP  ++    R+H+ ++  +T TGRL+S
Sbjct: 696  DALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDAAG-RIHSTFNQLATATGRLSS 754

Query: 716  LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
              PNLQNIP + DLG+++R  F +     L+SADYSQIELR+LAH+++   L   F    
Sbjct: 755  SNPNLQNIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGA 814

Query: 776  DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
            DIHR  A  ++    E V+P  RR+AKTINF +IYG+ P +L  +LRI  +EA  +I+RY
Sbjct: 815  DIHRRTAGLLYDTAPEDVTPDQRRNAKTINFGLIYGMGPQKLGQELRITVNEAKQFIERY 874

Query: 836  FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
            F R   +  + +  +   R+ G+V T+ GRR    E++S  + +R+   R AIN  IQGS
Sbjct: 875  FSRLQHLRNFYDNVEAAAREQGHVTTLAGRRRLLPEMHSENTQLRSQARRQAINTLIQGS 934

Query: 896  AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
            AADI + AM++ H     H L  +++LQ+HDEL+ EVPE     A + +   M +     
Sbjct: 935  AADIIKLAMLAAHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGG 994

Query: 956  INLRVPLKVNIKVSNNWQEEN 976
            + L VPL V+     +W   +
Sbjct: 995  VTLDVPLLVDWGAGKDWGSAH 1015


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/972 (30%), Positives = 469/972 (48%), Gaps = 153/972 (15%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 6   EPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDG-----EVA 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ GFEADD++
Sbjct: 60  IVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDVL 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    AE+EG+ V I+S D+DL QL+S    L      E +    + +++G+ PE+ V 
Sbjct: 120 ATLAKKAEREGYEVRILSADRDLYQLLSDRIHLLHPE-GEVLTPGWLQERYGLSPERWVE 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DN+PG+PGIG KTA  LL+E+G+L                E IL+  +  +
Sbjct: 179 YRALVGDPSDNLPGVPGIGEKTALKLLKEWGSL----------------EAILKNLDQVK 222

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                   +     + + L  L+ +  ++R+ T    +    + 
Sbjct: 223 -----------------------PERVREAIRNNLDKLQMSLELSRLRTDLPLEVDFAKR 259

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
              + +    K      E         S         +   +E+ P              
Sbjct: 260 --REPDWEGLKAFLERLEF-------GSLLHEFGLLEAPKEAEEAPWPP----------- 299

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                                     G A    +    +   ++ +A+A +   +     
Sbjct: 300 -------------------------PGGAFLGFLLSRPEPMWAELLALAGAKEGR----- 329

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                      VH ++D  G     KEI   L                K   ++  R G 
Sbjct: 330 -----------VHRAEDPVGALKDLKEIRGLL---------------AKDLSVLALREGR 363

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +   +D ML++Y+LD G +  +   +A+++    +++                      
Sbjct: 364 EIPPGDDPMLLAYLLDPGNT--NPEGVARRYGGEWKED---------------------- 399

Query: 542 AIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A   + +  +LW  L P++   E+LL +Y  +++P+  V++ ME TG+++D   L+ +S 
Sbjct: 400 AAARALLSERLWQALYPRVAEEERLLWLYREVERPLAQVLAHMEATGVRLDVPYLEALSQ 459

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E++  L  LE  ++ L+G  FNL+S  QL  +LF +L  P   KT+    ++T+  + ++
Sbjct: 460 EVAFELERLEAEVHRLAGHPFNLNSRDQLERVLFDELGLPPIGKTEKTGKRSTSAAVLEL 519

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +PI+  ILE+R+L K+KSTY D LP  ++ +T R+HT ++  +T TGRL+S +PNL
Sbjct: 520 LREAHPIVGRILEYRELMKLKSTYIDPLPRLVHPKTGRLHTRFNQTATATGRLSSSDPNL 579

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T LGQ+IR+AFI+     L++ DYSQIELR+LAH++    L +VF    DIH  
Sbjct: 580 QNIPVRTPLGQRIRKAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTE 639

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AA +FGV  E V   MRR AKT+NF ++YG+S  RL+ +L IP  EAA +I+RYF  FP
Sbjct: 640 TAAWMFGVPPEGVDGAMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFP 699

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            +  +I KT    R+ GYVET+FGRR +  ++N+   S+R   ER A N P+QG+AAD+ 
Sbjct: 700 KVRAWIAKTLEEGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLM 759

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ +   L    L  ++LLQ+HDELV E P+     A+Q+   +ME        L V
Sbjct: 760 KLAMVKLFPRLR--PLGVRILLQVHDELVLEAPKARAEEAAQLAKETMEGV----YPLSV 813

Query: 961 PLKVNIKVSNNW 972
           PL+V + +  +W
Sbjct: 814 PLEVEVGMGEDW 825


>gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058]
          Length = 880

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/991 (31%), Positives = 477/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R   +  GI   ++  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHYYDLAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+                          +I +K   +
Sbjct: 177 MGITPEQFIDLKALMGDQSDNIPGVT-------------------------KIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +LEY     L                ++ L         +       +    +++   T
Sbjct: 212 LLLEYGSLENLY-------------ENIDQLKASKMKENLIND-----KDKAFLSKTLAT 253

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +  A    P+ + ++    KG  +E             F  L  Q          + + 
Sbjct: 254 INTQA----PIEIGLDDLVYKGPQVEALSKF---YDEMGFKQLKTQLGTGQELVEVKPIE 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             ++ +++   +  + +                       F       +    + + +  
Sbjct: 307 FTKVTEVTADMLAPEQF-----------------------FYFEILGDNYHKEEIVGL-- 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  D +       + +   L                      ++F          +++K 
Sbjct: 342 AWGDSRQIYVGSSDLLQQPL---------------------FQEFLTKTALK--TYDLKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L  YGI +     D  L  Y+L S    +++A+IA+ +    L    +   K  K 
Sbjct: 379 TKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P       Q+ EH      V+L+    ++ +L     L +   +++P+  V+++MEI 
Sbjct: 438 ALP----EQEQLFEHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIA 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ + AE  K L SL + IYDL+G++FN++SPKQLG ILF  +  P     K
Sbjct: 494 GIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +       I+  ILE+RQ+SK++STY   L   I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIASIVSKILEYRQISKLQSTYIIGLQEAIAADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI++  
Sbjct: 613 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHISQDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 673 HLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R  A DYI+ YF RFPGI  Y+E      R  GYVETI+ RR    +INS   +IRN  E
Sbjct: 733 RKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIRNFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L +    ++MLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL  +      W E 
Sbjct: 853 KETMEAA----IELAVPLVADENAGQTWYEA 879


>gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
          Length = 913

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/979 (30%), Positives = 481/979 (49%), Gaps = 78/979 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L ++D   F +R+FYA P L +   G P   + GFCN+L  L     K+   ++ A  
Sbjct: 2   NTLSVIDTFGFFFRSFYALPPL-KNSQGFPTGLLVGFCNLLQSLY----KDPSCTYIAFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            +      R +IY +YKANR   PE L  QLP+        G   I I+G+EADD++A+ 
Sbjct: 57  LEGGGRNKRRDIYSEYKANRQAAPEELRLQLPIAIEWIAKMGFLNISIEGYEADDVVASI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             +A  +   V IIS DKDL QL+   T +YD + ++ I     ++K+G+ P+  +  Q+
Sbjct: 117 NKVANAQNITVRIISHDKDLYQLIDENTYIYDPIGKKDIKEAQCLQKYGVYPKNFIDYQS 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRRENILEYAETAR 241
           L GDS DN+ G+ GIG K+A  L+Q +G++E++      ++     +  + I E  + A 
Sbjct: 177 LVGDSSDNVMGVKGIGAKSAQKLIQRFGSIESLYARIDEVESATTPRIAKLIKEGKDNAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+KLV L  ++   I L   ++ + N   ++     LE  +L N ++            
Sbjct: 237 LSKKLVTLYDNLLENIDLNKCLMPESNP--MLKIFDELEKYELKNIISK----------- 283

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                         I++  +R T  K++Q          +   Q+PQ +  ++ +  S  
Sbjct: 284 --------------IQSPYERYTQKKSAQMG-----IGSLQGTQSPQNIESKKDEAFS-- 322

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                +   +   + ++  +  +       F   +D +D   ++ +  +    D K+   
Sbjct: 323 ----FTPHLLDTLESVEFVLDSIPQGVRVGFDCESDGLDLQEAQLVGFSFCF-DGKNAYY 377

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
             V   ++ +         G     +E  S + + F       IGHN+K+D  +++R  G
Sbjct: 378 VPVGHRYLGV---------GNQLNLQEAKSAISRIF---THPLIGHNLKFDFSLIYRTLG 425

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           +  +    D M++S++ DS      +     KW ++T               +++     
Sbjct: 426 LEHIGKIYDSMILSWLYDSIAPV-GLDKQMLKWFNHTMISFDSVVPKGENFSQVNIITAT 484

Query: 540 EHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           ++A E++    +L+  L  +    +   +L + + L+ P I V+  ME+ GI++D  LL+
Sbjct: 485 QYAAEDAAATFKLYHRLEDEFHKREWGGILELAQNLEYPFIKVLMDMELEGIRVDIGLLE 544

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +  + S+++  L + IYDL GE FNL+SP+QL  ILF  L    G   K G   +T + 
Sbjct: 545 ILKDKSSEHIAELSQKIYDLCGETFNLNSPQQLAHILFENLGLKPGRSVKGGL--STDEK 602

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLAS 715
                   +P+I  IL++R+ +K+KSTY + L        T R+HT +    T TGRL+S
Sbjct: 603 TLLAIIDSHPVIDLILDYRESNKLKSTYIEPLLRLGRTNETHRIHTSFLQNGTATGRLSS 662

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             PNLQNIP++ + G+KIR+AFIS     LIS DYSQIELR+LAH  K   L + F    
Sbjct: 663 KSPNLQNIPVRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDK 722

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   AA +FG   E+ + Q R  AK+INF +IYG+   +L+  L+IP  +A +YI+ Y
Sbjct: 723 DIHFETAARLFG---EQEAMQKRFIAKSINFGLIYGMGSKKLSQTLQIPLKQAKEYIESY 779

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  FP I +++   + F+ +NGY +T+ G R ++D   +      N   R  IN+  QGS
Sbjct: 780 FALFPTIKDFLNAQEEFLLENGYSQTLLGHRRYFDFKRATDFMKANF-LREGINSIFQGS 838

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + +M  +HK      L  KMLLQ+HDEL+FE P E     ++ +   M       
Sbjct: 839 AADLIKLSMCEIHKRYAKSDL--KMLLQVHDELIFEAPSERAENYAKEVADIM----NSI 892

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPLK  I +  NW E
Sbjct: 893 YKLEVPLKCGIAIGTNWAE 911


>gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018]
 gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018]
          Length = 896

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/981 (29%), Positives = 480/981 (48%), Gaps = 98/981 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + ++D   F++R+++A P L +  DG P   + GF N     + N  K+    +   
Sbjct: 2   KKTITIIDTFGFLFRSYFALPPL-KSRDGFPTGLLTGFINF----ISNIGKDFETDYIVF 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D    TFRN++Y  YKA RP+ PE LL QLP+     +  G       G+EADD++A+
Sbjct: 57  ALDAKGETFRNKLYSQYKAQRPEAPEDLLTQLPIAISWIEKMGFKTAIRTGYEADDMVAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
               A+++G  V I+S DKDL QL+    +  L+D  K+  I+ E  I+K+G+ P +   
Sbjct: 117 IANDAKQKGLEVRIVSHDKDLYQLIDDANSVYLFDPTKKVIINEEKCIEKYGVKPSQFTD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            Q+L GD+ DNIPG+ G+G KTA  L++E+G LENI  N   I++K+ +E ++E  E A 
Sbjct: 177 YQSLLGDTADNIPGVKGVGAKTAESLIKEFGTLENIYANIDNIEKKRTKELLIEGKENAI 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+                          +L++ +    +   +       +     I  
Sbjct: 237 LSK--------------------------KLVTLMNDCHYIDNLEEFILPIENPILRISD 270

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           ++L  +         +  +   T I   Q                               
Sbjct: 271 ILLQYDMARVLDRINKDGMGYQTQIPLQQVK----------------------------- 301

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  + N   +   +  +      SF   T  +D  ++K +  + +  + K    
Sbjct: 302 KEEKIEYILLNNENSLSMAINTIPRDAIVSFDTETSDLDVKNAKLVGFSFAYEENK-AYY 360

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
             +  +++ +    S ++       K  +  L ++        +  N KYD  ++   + 
Sbjct: 361 VPIGHVYLGVGNQISLEA------AKNAIIQLNRY------KLVLQNFKYDYEIIKNNFD 408

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           I +R + D M++S++L++      +     K+  +         K       +   +  E
Sbjct: 409 IELRLYADTMILSWLLNTNEKV-GLDYQIDKYFDHKMISFTDVVKKGENFSNVDIERACE 467

Query: 541 HAIENSNVILQLWLLLRPKLIVEKL------LHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +A E++ + L+   L + +L + K       L++   ++   I V++ ME+ GI++D +L
Sbjct: 468 YAAEDALMTLR---LFKKQLEIFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNL 524

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK+     +KN+  L   IY  SG +FN++SPKQLG +LF  L  P+  KTKTG   +T 
Sbjct: 525 LKEYKELSNKNINELTAKIYQTSGVEFNINSPKQLGALLFETLGLPTAKKTKTGY--STD 582

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRL 713
           + +      ++ +I  +L++R+  K++STY + L          R+HT +    T TGRL
Sbjct: 583 EAVLNGLINEHEVIPLLLQYREAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTGTATGRL 642

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S  PNLQNIP K+D   +IR+AFI     KL++ DYSQIELR+LAH ++   L + FEN
Sbjct: 643 SSKNPNLQNIPTKSDSTIQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFEN 702

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IFG   E+ + + R  AK+INF ++YG+   +L   L IP  EA  YI 
Sbjct: 703 DLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKLGETLGIPSKEAKQYID 759

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  F  + +Y++  ++F   NGYV+T+  R+  +D  NS  + ++    R A+N   Q
Sbjct: 760 SYFEAFKSVKDYLKSIEDFAHINGYVKTLLNRKRLFD-FNSANAMMKAAYLREAVNTLFQ 818

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAAD+ + AMI++++  +D++   K+LLQIHDELVFEV +E +   +  I + ME    
Sbjct: 819 GSAADLIKLAMINIYQKYKDNE-NIKLLLQIHDELVFEVKDEFVEEITFSIKNIMEN--- 874

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L VPLKV++ V ++W++
Sbjct: 875 -IYKLNVPLKVSLSVGSSWKD 894


>gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
 gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
          Length = 896

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/981 (29%), Positives = 480/981 (48%), Gaps = 98/981 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + ++D   F++R+++A P L +  DG P   + GF N     + N  K+    +   
Sbjct: 2   KKTITIIDTFGFLFRSYFALPPL-KSRDGFPTGLLTGFINF----ISNIGKDFETDYIVF 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             D    TFRN++Y  YKA RP+ PE LL QLP+     +  G       G+EADD++A+
Sbjct: 57  ALDAKGETFRNKLYSQYKAQRPEAPEDLLTQLPIAISWIEKMGFKTAIRTGYEADDMVAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
               A+++G  V I+S DKDL QL+    +  L+D  K+  I+ E  I+K+G+ P +   
Sbjct: 117 IANDAKQKGLEVRIVSHDKDLYQLIDDANSVYLFDPTKKVIINEEKCIEKYGVKPSQFTD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            Q+L GD+ DNIPG+ G+G KTA  L++E+G LENI  N   I++K+ +E ++E  E A 
Sbjct: 177 YQSLLGDTADNIPGVKGVGAKTAESLIKEFGTLENIYANIDNIEKKRTKELLIEGKENAI 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+                          +L++ +    +   +       +     I  
Sbjct: 237 LSK--------------------------KLVTLMNDCHYIDNLEEFVLPIENPILRISD 270

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           ++L  +         +  +   T I   Q                               
Sbjct: 271 ILLQYDMARVLDRINKDGMGYQTQIPLQQVK----------------------------- 301

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 Y  + N   +   +  +      SF   T  +D  ++K +  + +  + K    
Sbjct: 302 KEEKIEYILLNNENSLSMAINTIPRDAIVSFDTETSDLDVKNAKLVGFSFAYEENK-AYY 360

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
             +  +++ +    S ++       K  +  L ++        +  N KYD  ++   + 
Sbjct: 361 VPIGHVYLGVGNQISLEA------AKNAIIQLNRY------KLVLQNFKYDYEIIKNNFD 408

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           I +R + D M++S++L++      +     K+  +         K       +   +  E
Sbjct: 409 IELRLYADTMILSWLLNTNEKV-GLDYQIDKYFDHKMISFTDVVKKGENFSNVDIERACE 467

Query: 541 HAIENSNVILQLWLLLRPKLIVEKL------LHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +A E++ + L+   L + +L + K       L++   ++   I V++ ME+ GI++D +L
Sbjct: 468 YAAEDALMTLR---LFKKQLEIFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNL 524

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK+     +KN+  L   IY  SG +FN++SPKQLG +LF  L  P+  KTKTG   +T 
Sbjct: 525 LKEYKELSNKNINELTAKIYQTSGAEFNINSPKQLGALLFETLGLPTAKKTKTGY--STD 582

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRL 713
           + +      ++ +I  +L++R+  K++STY + L          R+HT +    T TGRL
Sbjct: 583 EAVLNGLINEHEVIPLLLQYREAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTGTATGRL 642

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S  PNLQNIP K+D   +IR+AFI     KL++ DYSQIELR+LAH ++   L + FEN
Sbjct: 643 SSKNPNLQNIPTKSDSNIQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFEN 702

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
            LDIH   A +IFG   E+ + + R  AK+INF ++YG+   +L   L IP  EA  YI 
Sbjct: 703 DLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKLGETLGIPSKEAKQYID 759

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  F  + +Y++  ++F   NGYV+T+  R+  +D  NS  + ++    R A+N   Q
Sbjct: 760 SYFEAFKSVKDYLKSIEDFANINGYVKTLLNRKRLFD-FNSANAMMKAAYLREAVNTLFQ 818

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAAD+ + AMI++++  +D++   K+LLQIHDELVFEV +E +   +  I + ME    
Sbjct: 819 GSAADLIKLAMINIYQKYKDNE-NIKLLLQIHDELVFEVKDEFVEEITFSIKNIMEN--- 874

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
               L VPLKV++ V ++W++
Sbjct: 875 -IYKLNVPLKVSLSVGSSWKD 894


>gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 911

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/991 (30%), Positives = 494/991 (49%), Gaps = 97/991 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+K     L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + +    +
Sbjct: 1   MKKA---VLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPD----Y 51

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            A  FD    +  R EIY DYK+NR   PE L+ Q+P +  A +AF I   +I+G+EADD
Sbjct: 52  MAAAFDVKRSSLKRTEIYSDYKSNRQSAPEDLIKQIPRIEEALEAFNINRYKIEGYEADD 111

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKW 172
           ++ +      K+   V I++ DKDL QLV     +    K  +          + V+   
Sbjct: 112 VLGSLAKKLAKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGTLKTSDDVVNYL 171

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QK 227
           G+ PEK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K       
Sbjct: 172 GVVPEKIPDLFGLIGDKSDGIPGVTKIGEKKALSIFSQYDSLEKIYENIDNLKSIDGIGP 231

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
              +N++   + A +SR+L  + T++ IT+  + L     +  +L S  K LEF   I +
Sbjct: 232 SLIKNLINEKDIAFMSRELAKIFTNLDITVEEDGLQY-GMDRRKLYSLCKVLEFKMFIKK 290

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
           +      +     P +  I   E K                               +++P
Sbjct: 291 LG----LEEKPQNPTLFSIENLEEK-------------------------------KESP 315

Query: 348 QKLFLERLQKLSQYPINNDSYTK--IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           + +  E ++   +  ++  +     I N   + +  + L      +         + + +
Sbjct: 316 KIVEEENIEFTKEINLDLSNRELLIIDNENSLNEQKEYLTNYKKIA---------SIYYE 366

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
            + I +ST D+           +  L+            L  + +S L           I
Sbjct: 367 GLGIILSTEDKD---------FYFPLNHGGLLAKNIDRNLVVKFISEL-------DIKFI 410

Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
            +N K     L   GIS +     M+++Y L S ++  D      ++     K+  K+  
Sbjct: 411 SYNFK----ALLNLGISFKSMYMDMMIAYHLISSQTKIDPIIPITEYSKLEPKDF-KTAF 465

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             + ++ I+     ++  + S  IL ++  L   L  E L  +    + P+I V+S ME 
Sbjct: 466 GKVNVELITAQDFSKYLSDISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMER 525

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KT
Sbjct: 526 KGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 585

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T    LE +      I + +L++R+L+K+K+TY D+LP  +++   R+HT ++ 
Sbjct: 586 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDE-NSRIHTSFNQ 643

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRL+S EPNLQNIP+KTD G KIR  FI+   K L+S DYSQ+ELR+L  ++K  
Sbjct: 644 IGTATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDE 703

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + +    D+H + A  IF +   + VS + R  AK INFSIIYG +PF LA +L+IP
Sbjct: 704 NLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 763

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             +A++YIK+YF ++P +  + ++   F  ++GYV+T+FGR+ +   I+S   +I++  E
Sbjct: 764 VKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 823

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+N  IQG+AA++ ++ M+ V+  L+D +    +LLQ+HDEL+FEV +  +   S I+
Sbjct: 824 RMAVNTVIQGTAAEVLKKVMVKVYDILKDKE-DIALLLQVHDELIFEVEKNSVEKYSGIL 882

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              M+     +    V L +NI +  NW E 
Sbjct: 883 ADIMKNTVQLE---DVKLNININIGKNWAEA 910


>gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 878

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/983 (29%), Positives = 480/983 (48%), Gaps = 116/983 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   + L+DGSS I+RAF+A P L+   DG+  N + GF  M    +   + +    +
Sbjct: 1   MNK--TVMLIDGSSLIFRAFFALPKLTNN-DGVMTNGVYGFLTMYNNAVDRYKPD----Y 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  + TFR++ + DYKA R K+P  L  Q  +++    + G+   ++ GFEADDI
Sbjct: 54  ILVAFDRASKTFRHKEFKDYKATRDKMPSELSYQFGILKDILDSMGVKYTDLDGFEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           + TY  +A+++G+   +I+ D+D +QLV     +  T K     ++  +E + +++G   
Sbjct: 114 VGTYAKMAKEKGYNSVLITGDRDYLQLVDENIVVNLTKKGVSETKEYTVETIKEEFG--- 170

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
                   LT   + ++ G+               G+  + +     I  KK        
Sbjct: 171 --------LTPKQLIDVKGLE--------------GDKSDNIPGVDGIGPKKA------- 201

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK-LINRVATTYDCD 295
                                               I F++     + L   +       
Sbjct: 202 ------------------------------------IGFIQKYGSIEGLYENIDEVSGKK 225

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     I     K   I T    +  ++  +   + +++ +    +     FLE +
Sbjct: 226 TKENLINSEAIAYMSKKIGTIVTSAPVEYDLEEIKLGEVDEKSLREKFSKYNFNKFLEDM 285

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +       +Y K+   ++  + V++++     +FK+I D     HS    IAI T  
Sbjct: 286 DGGNPIEAKEFTYEKL---EEYPKLVEEIKKEKEFTFKVIYDGDRYIHSNAYKIAIKTKK 342

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                +                         ++ ++ +K+ FE+E  LK   +IK D ++
Sbjct: 343 SPTYIAEP----------------------DEDFVTNMKEIFEDEKILKNSFDIKEDLVL 380

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531
           L + GI     ++DIMLM Y++D  RSS+D+ +++Q +L Y     +++L   K ++  +
Sbjct: 381 LAKLGIDGALPYDDIMLMHYLIDPSRSSYDMKTLSQSYLDYEVNNPEDLLGKGKKALKYE 440

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +   ++        N I      L  KL    +  +Y+ ++  +  V++ MEI G   D
Sbjct: 441 DLDFDKLGNFMASEINAIYDAKDKLVDKLNEYHMYDLYKEIEIELSKVLADMEIVGFVTD 500

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           + +L+++   I  ++  L + IY+LSG +FN++S KQLG++LF  L+ P   KTKTG + 
Sbjct: 501 RKVLEELKEGIDADIDELTQEIYELSGSEFNINSTKQLGEVLFKDLELPVIKKTKTG-FS 559

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T A  LE++    + II  I  +R+L K++STY + L   I+   +   TF       TG
Sbjct: 560 TDASVLEKLR-DKHQIIPKIERYRELFKLRSTYIEGLEKAIDYDGRIRSTFR-QNIAATG 617

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQN+PIKTD G+ IR+AF +   K LI ADYSQIELRILA ++    +   F
Sbjct: 618 RLSSQDPNLQNLPIKTDEGRLIRKAFKAEEGKILIDADYSQIELRILASLSGDEHMIDAF 677

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            N  DIHR  A+++F   +E+V+ + R  AK +NF IIYGIS + L+  L I R EA +Y
Sbjct: 678 INVDDIHRKTASKVFHTPLEEVTKRQRSEAKAVNFGIIYGISDYGLSQNLNISRKEAKEY 737

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  Y   +P I EY++      +++GYVET+F RR +  EINS   ++R+  +R A+N P
Sbjct: 738 IDNYMASYPSIKEYMDSIVEKAKEDGYVETLFKRRRYVPEINSRNFNVRSFGQRVALNTP 797

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI  +K+L+  K+  K++LQIHDE++ E  +E+   A +I+  SME A
Sbjct: 798 IQGTAADIIKIAMIETYKNLKKEKIDAKIILQIHDEIILEASKEDEDRAIEILRESMESA 857

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                NL VPL V+I   ++  E
Sbjct: 858 A----NLEVPLIVDIDTGDSMYE 876


>gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
 gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
          Length = 905

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/989 (30%), Positives = 504/989 (50%), Gaps = 101/989 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+K+  + L D S+ +YRA++A      K +  P  A+ GF N L  +++    +    +
Sbjct: 1   MEKKKAVLL-DVSAIMYRAYFANMNFRTKTE--PTGAVYGFVNTLMSIIKEFSPD----Y 53

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
               FD    +  R+EIY +YKA R   PE L+ Q+P +      + I   +I+G+EADD
Sbjct: 54  IGAAFDVKRASLKRSEIYKEYKAQRESAPEDLIAQIPRIEELLDCYNIERFKIEGYEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-------KIDIEHVIKKW 172
           ++ T       +G  V +++ DKDL Q++     +    K E           E VI+  
Sbjct: 114 VLGTLAKNLSAQGVEVYVVTGDKDLAQILDENINIALLGKGEGGDKFKIIRTDEDVIEYL 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QK 227
           G+P +K+  L  L GDS D IPG+  IG K A  +L++Y  LE I  N  ++       K
Sbjct: 174 GVPSKKIPDLFGLIGDSSDGIPGVRKIGPKKAIPMLEKYETLEGIYENIDKLTEIAGIGK 233

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
               N++E  E A +SR+L ++  DVP+   L++L   D +  +L+   K L        
Sbjct: 234 SLVNNLVEDKEIAFMSRELAIICQDVPLEFNLKNLSY-DIDNIKLLELFKIL-------- 284

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
                                                     +F +L  +    N ++  
Sbjct: 285 ------------------------------------------EFKALIKKMGLENGDEKT 302

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSKP 406
           Q++      + S+      ++  +    DI+  V+ L+ +     +              
Sbjct: 303 QEI------EKSKRVSKERTFKVVEGKADIKDMVKSLKKVDLVSCYYTEY---------- 346

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             IA S+ D+     F+ +      +  +  D T      +     +++FF+N +   + 
Sbjct: 347 -GIAFSSFDKDYYFPFEKKCESKIGANISLFDPTPVVEDCEINCKEIQEFFDNYNGEIVT 405

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           +N+K    +L+R GIS++  +  M+++Y L S ++  ++    +                
Sbjct: 406 YNLK---NILNR-GISVKNCKLDMMIAYHLISSQTKENVELPIEHLTGIELDNYADKFGK 461

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
             P + IS  +  ++  + +  +L+ + +L+ +L    L+ V   ++ P+I+++S MEI 
Sbjct: 462 EKP-ENISAKEYGKYLCQRTMGLLECYDILKEELEDRNLMKVLNEIEMPLIEILSSMEIK 520

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+ID +       E+   +  L+E IY+ +GE+FN++SPKQL +ILF KL  P   KTK
Sbjct: 521 GIKIDPEYFSNYEKELGDLIEKLQEKIYEEAGEEFNINSPKQLAEILFFKLNLPPVKKTK 580

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG   T  + LE++      I K ILE+R+L+K+K+TY D++P   +++  RVHT ++  
Sbjct: 581 TG-LSTDEEVLEKLKVDGAEIAKAILEYRKLAKLKNTYVDAIPKLRDEKD-RVHTTFNQI 638

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S +PNLQNIP+KTD G KIR+ F++     L+  DYSQIELR+LA ++    
Sbjct: 639 GTTTGRLSSSDPNLQNIPVKTDEGIKIRQGFVAEKNSVLMGIDYSQIELRVLAQLSGDEN 698

Query: 767 LYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + ++NS+D+H + A +IF + + E+VS + R  AKTINFSIIYG + F LA +L I +
Sbjct: 699 LREAYQNSMDLHSLTARKIFELSDEEEVSREERIIAKTINFSIIYGKTAFGLAKELGISQ 758

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA++YI RYF+++P +  + ++   F  ++GY ET FGRR   D INS   +I++  ER
Sbjct: 759 KEASEYIDRYFNQYPKVKGFEKEIVEFTEKHGYTETFFGRRRLIDGINSKNKNIKSQAER 818

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+ IQG+AA+I ++ MI ++K ++D      +LLQ+HDEL+FE+ +E++    + I 
Sbjct: 819 MAVNSVIQGTAAEIIKKVMIEIYKYIKDRD-GISLLLQVHDELIFEIEKEKLEMYREDIE 877

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             M ++        VPL++N  +  NW E
Sbjct: 878 KIMRESVKFD---SVPLEINTNIGVNWAE 903


>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 867

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/978 (28%), Positives = 455/978 (46%), Gaps = 127/978 (12%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG SF YRA++A P  +     G   NA+ GF +ML  +L+N + +    H AV F
Sbjct: 6   LLLIDGHSFAYRAYFALPAENFSTSTGQTTNAVYGFLSMLLTVLENEKPD----HVAVAF 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR + YP+YKA R + PE    Q+ L++   +A  IP + ++G+EADDI+AT  
Sbjct: 62  DLGRQTFRLDEYPEYKAGRARTPEDFPGQVDLIQDMLRALNIPVLTLEGYEADDILATLA 121

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A   G    I S DKD  QL S T  +    +      +   + V +K+G+ P     
Sbjct: 122 LQATDRGVTTKIASGDKDSFQLASDTVTILYPKRGVTELNRFTPQAVEEKYGVTPANYRG 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+  DN+PG+PG+G KTAA  L +YG+L+ I+ NA  I  K              
Sbjct: 182 LAALVGEKADNLPGVPGVGEKTAAKWLAKYGDLDAIIDNAEDIGGKV------------- 228

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                      G +L   L  ++    +N++    +     ++ 
Sbjct: 229 ---------------------------GEKLRDHLDDVKRNYRLNKLVDDLELSTNPLDT 261

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            V +    +          +        +F  L+++ + +      Q   +E  + ++  
Sbjct: 262 QVGEGAHLD----------EVTALFDQLEFRQLAERVNALFFGDVEQVPQVELPEVVA-- 309

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                      +  D++ W+  +E      F +  DT+                      
Sbjct: 310 ----------TSGADLRAWLDAVEEP--VGFALEDDTL---------------------- 335

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                    L+ + S        L +   + L  F   +    + H++K         G 
Sbjct: 336 --------GLASNDSAIWVDLTDLDENSFNALDTFISTKKV--VAHDVKPQVHAWVERGF 385

Query: 482 S-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +  R   D  L +Y+L      + +A +A   L    +E           D+   + V E
Sbjct: 386 TQPRPIMDTELAAYLLAPDARGYSLADMASD-LGVVLEE-----------DRDLLTDVGE 433

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                + V + L+  LR  L    L  V + ++ P  +++++MEI GI IDQ +L ++  
Sbjct: 434 QLGHRAWVTVALYPRLRQDLERNHLQDVLDGIEIPTQEILARMEIAGIAIDQSVLNELIT 493

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E            Y   G + NL+SPKQL  +LF +L  P   +TKTG         + +
Sbjct: 494 EFEAAAQQSASEAYASIGHEVNLNSPKQLQTVLFDELNMPKTKRTKTGYTTDADSLADLL 553

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +P ++++L  R  +K+K T    L   +     R+HT Y      TGRL+S +PNL
Sbjct: 554 VKTQHPFLEHLLAHRDRTKLKQTVVG-LQKVV-ADDGRIHTTYLQTVAATGRLSSKDPNL 611

Query: 721 QNIPIKTDLGQKIRRAFIS---PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           QNIP++TD G++IR  F +      + L+S DYSQIE+RI+AH++    L Q F++  D+
Sbjct: 612 QNIPVRTDAGRRIRSVFQAAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDL 671

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR VA ++F V IE V+ Q R   K +++ ++YG+S + L+ QL IP  EA+  +  YF 
Sbjct: 672 HRYVAGQVFEVPIEDVTDQQRSKVKAMSYGLVYGLSAYGLSRQLGIPTGEASALMDDYFA 731

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF  + EY+++     R  GY ET++GRR +  ++ S +  +R + ERAA+NAPIQGSAA
Sbjct: 732 RFGAVKEYLDQVVEEARGRGYTETMYGRRRYLPQLRSDRRQLREMAERAALNAPIQGSAA 791

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM  V  +L + +L ++MLLQ+HDE++ E+   E     +++  +M +A     +
Sbjct: 792 DIMKIAMKRVDDALREAELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQAA----D 847

Query: 958 LRVPLKVNIKVSNNWQEE 975
           L VPL VN+ V  NWQ+ 
Sbjct: 848 LSVPLDVNVGVGPNWQDA 865


>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
 gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
          Length = 1015

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/1038 (27%), Positives = 460/1038 (44%), Gaps = 98/1038 (9%)

Query: 4    ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            +  L+L+DGS+FI+R FYA   + R  DG P NA+     +L +LL+  +      HFA 
Sbjct: 11   QEPLWLMDGSAFIFRGFYAFQNMQR-SDGFPTNALFIVTRILLRLLREEKPR----HFAF 65

Query: 64   IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            + D    TFR++++P YKA R   PE L+ QL  +R    A G+P     G EADD IA+
Sbjct: 66   VLDGKGPTFRHDLFPLYKAQRAATPEPLVQQLEPIRRMVTALGLPLEVSDGCEADDCIAS 125

Query: 124  YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT-VKEEKID-IEHVIKKWGIPPEKMVC 181
                   E   V II  DKDL Q + P   L+D   KEEK+  +     + G+ P +   
Sbjct: 126  LAARYRDE-RPVVIIGADKDLKQCLHPNVVLWDPGAKEEKLTTLASFTAETGLTPAQWPD 184

Query: 182  LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +QA+ GD+ DNIPGIPG+G KTA+ +  ++  LE+I     R+     ++   ++ +   
Sbjct: 185  VQAVIGDTSDNIPGIPGVGPKTASKIFADFPTLEDIRDGFDRLPPN-LQKKFEQHLDAMF 243

Query: 242  LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-----------VAT 290
            L R+L  L  D    +  E L ++  +     +FL+  E   L              VA 
Sbjct: 244  LYRQLTTLAIDRCADLTPERLSVQPLDARTASTFLQEFELRALSRELAGMVRNGHVQVAL 303

Query: 291  TYDCDAA-------------------------------------NIEPVVLDINTTENKG 313
              D  A                                        +    D   T    
Sbjct: 304  PDDASAPMDMGAMAAPAAPSTPRPSDSGTPGSLFGEGGVPLPWDTDDAPRNDAGHTPAGA 363

Query: 314  IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ-----KLFLERLQKLSQYPINNDSY 368
                  +       TSQ  + +   +      +P      K   E     +       + 
Sbjct: 364  TGAGGTLRGMPGTPTSQDDATAPAEAASRETGSPPAQSAIKAAPEAATDDASAKSAKGTR 423

Query: 369  TKIVNTKDIQQWVQK--LETIGSASFKIITDTMDAFHSKPI-AIAISTLDQKDDTSFKVE 425
                     +  +Q+  L    +     +    D     P     I+ +    D +    
Sbjct: 424  PVSEAQARKRALIQQASLFDQSTRRNDTVATCTDPRGLPPCQGRDIAVVPLCGDAARTCP 483

Query: 426  TIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYD--KLVLHR 478
             +    +  T   +        E+     +  L +   +   +    ++K       L R
Sbjct: 484  PVSGTQNGSTGPVAFAVAVAGCEVQYSGPVQGLARHLASAKRI-ATPDVKALLRSHALWR 542

Query: 479  YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
              I    + D+ L +Y+LD     +    +A +W     +                    
Sbjct: 543  -DIPGDRWFDLGLAAYLLDPEERDYGWPRLAARWGDMLDRSTDNPG-------------- 587

Query: 539  QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                     + L++   +  +L    L  +   L+ P++ V++ ME  GI +D+      
Sbjct: 588  --------LLALEMAQGMAGRLAGASLDTLMRTLELPLVPVLADMEEAGIAVDRTAFAAF 639

Query: 599  SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
              E+   L  + + +Y  +G +FN+ S +QLG++LF  L  P+  KT+ GQ   T+QD  
Sbjct: 640  LDEVQHELDRITQEVYKAAGGQFNIRSAQQLGELLFGTLGLPTVGKTRGGQAT-TSQDAL 698

Query: 659  QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +   G +P++  IL++R+L K++STY + LP  ++    R+H+ ++  +T TGRL+S  P
Sbjct: 699  EKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVD-DAGRIHSTFNQLATATGRLSSSNP 757

Query: 719  NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
            NLQNIP + DLG+++R  F +     L+SADYSQIELR+LAH+++   L   F    DIH
Sbjct: 758  NLQNIPARGDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIH 817

Query: 779  RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            R  A  ++    E V+P  RR+AKTINF +IYG+ P +L  +LRI  +EA  +I+RYF R
Sbjct: 818  RRTAGLLYDTAPEDVTPDQRRNAKTINFGLIYGMGPQKLGQELRITVNEAKQFIERYFSR 877

Query: 839  FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
               +  + +  +   R+ G+V T+ GRR    E++S  + +R+   R AIN  IQGSAAD
Sbjct: 878  LQHLRNFYDNVEAAAREQGHVTTLAGRRRLLPEMHSENTQLRSQARRQAINTLIQGSAAD 937

Query: 899  ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            I + AM++ H     H L  +++LQ+HDEL+ EVPE     A + +   M +     + L
Sbjct: 938  IIKLAMLAAHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTL 997

Query: 959  RVPLKVNIKVSNNWQEEN 976
             VPL V+     +W   +
Sbjct: 998  DVPLLVDWGAGKDWGSAH 1015


>gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake]
 gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake]
          Length = 861

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/968 (34%), Positives = 509/968 (52%), Gaps = 123/968 (12%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++D    ++RA+YA P LS  + GLP+  + GF N+  K ++    +    +  V+FD  
Sbjct: 6   VIDAYGLLFRAYYALPNLSTSY-GLPIGGVYGFINIFLKYIEKHSTD----YLVVVFDTG 60

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +  FR++IYP+YK+NRPK+P  L+ Q  L+R A  AF I + E+ G+EADD+IAT T   
Sbjct: 61  SKNFRHDIYPEYKSNRPKLPNDLISQFSLLREAVSAFNIASEEVIGYEADDVIATLTKKY 120

Query: 129 EK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
            + +   VT++++DKDL+QL++    ++D +K   I+ E V  K+GI   +++   +LTG
Sbjct: 121 SQLQDVEVTVVTSDKDLLQLLNYGIRIFDPIKNRYIEEEDVHNKFGISSNQLLDFLSLTG 180

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DNIPG+PGIG KTAA LL ++G+L ++L                             
Sbjct: 181 DASDNIPGVPGIGVKTAAKLLNDFGSLNDLL----------------------------- 211

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
                         L  ++    R    +       +++R   T            +DI 
Sbjct: 212 --------------LRAQEIKTNRCRESIVQYSDQAILSRQLVTLC--------DTVDIC 249

Query: 308 TTENKGIAIETEIDRDTTI-KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
               K I   +EI   T   K  +  SL ++ +KI  +  P                   
Sbjct: 250 GGIEKYIFQNSEIHELTAFLKKYELQSLINKVNKIFKQNVPSTNRNLNNSSDIVTSDKAI 309

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y    + + +  +++  ++ G  +  I         +   +I++S    + +  F ++ 
Sbjct: 310 QY----SAEGLSVFIENCKSEGIIALHIE-----IVDNSIGSISLSY---RKEVFFYIDK 357

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
             +D                 + L ++K  F   + LK+ +++K    ++    I    F
Sbjct: 358 DHVD-----------------DALEFIKPIFSLGYILKVIYDVKTLLKIIPNLDIV--AF 398

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            DIM+MSYVL+ G   H + +I    +SY  ++ + +                     N+
Sbjct: 399 NDIMVMSYVLNPGVHDHSLQNI----ISYNVEQSITN--------------------MNA 434

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
             +L L  LLR  L V++L  VYER++KP+I V+  ME  G+ ++ D+LK +SA  S+ +
Sbjct: 435 ANLLLLHELLRKSLFVDRLYTVYERVEKPLIRVLDNMEKIGVLVNVDVLKTLSATFSEKI 494

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             LE  IY LSG +FN++S KQLG+ILF K+    G K  +G + T A+ L  +   D  
Sbjct: 495 NMLESEIYKLSGAEFNIASSKQLGNILFDKMGIKKGKKLSSGNYSTDAEVLSDLAFNDVE 554

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I   IL+WR L+K+K+TY D L    N  + RVHTFYS+ ST TGRL+S  PNLQNIP++
Sbjct: 555 IADKILKWRHLTKLKTTYTDVLEKQKNSNSGRVHTFYSMVSTATGRLSSSNPNLQNIPVR 614

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           ++ G  IRRAFI+    KLISADYSQIELRI+AHIA +      F  + DIH + A +IF
Sbjct: 615 SEEGNSIRRAFIAKKGYKLISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITAKQIF 674

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
             N EK+   +RR AK+INF IIYG+S F LA QL I RSEA+ YI  YF  +P I  Y+
Sbjct: 675 --NTEKLDKNLRRRAKSINFGIIYGMSAFGLAKQLSISRSEASTYINNYFRSYPEIQSYM 732

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           E  K + + +GY  TIFGR+    +INS   + RN +ERAAINAP+QG++ADI + +MI 
Sbjct: 733 ENIKAYAKTHGYTRTIFGRKCFVKDINSDNVTARNFSERAAINAPLQGTSADIIKMSMIH 792

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           +   L+       ++LQ+HDEL+FE+ EE++  A +II   ME      + L VPLKV+ 
Sbjct: 793 LFDKLK----NGSLILQVHDELLFEILEEQVDDAVKIIREVMEN----IVKLSVPLKVDF 844

Query: 967 KVSNNWQE 974
            + +NW +
Sbjct: 845 NIGDNWAD 852


>gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
 gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
          Length = 848

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/955 (31%), Positives = 463/955 (48%), Gaps = 120/955 (12%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92
           +  NAI  F NM   ++Q      + +H  V FD    TFR E Y +YKA R K P    
Sbjct: 1   MHTNAIYAFNNMFENVMQKE----MPTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFK 56

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            Q+P +R   +  G+   E+  +EADDII T     +K+ F V ++S D+DL QL + T 
Sbjct: 57  EQMPYIRELLEGLGVKYYELPNYEADDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTV 116

Query: 153 CLYDTVKE----EKIDIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
            +  TVK     E    EH+ +K+ G+ P++++ ++ L GD+ DNIPG+  IG KTA  L
Sbjct: 117 KVDITVKGVSDIESYTPEHIAEKYDGLTPKQIIDMKGLAGDTSDNIPGVTKIGEKTAIKL 176

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
                           +KQ    E + E  +  + S+                  + E+ 
Sbjct: 177 ----------------LKQYGSVEGVYENIDEMKKSK------------------MKENL 202

Query: 268 NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIK 327
              +  +FL          R+AT          PV +++     +G  +E  +     + 
Sbjct: 203 INDKEQAFLSK--------RLATI-----EVNAPVEVNVEDLAYEGKNLEKLVPFYKEMD 249

Query: 328 TSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387
             QF       +K++  + P               + +  +  + +    + +   +   
Sbjct: 250 FKQF------LAKLDITEEP-------------VEMEDILFEVVEDQLTNEMFTDDM--- 287

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +  +     +   S  +   ++  + K   +     +F                   
Sbjct: 288 ---ALYVEMMEDNYHTSPIVG--LAWGNNKKIYTTNNLAVFES----------------- 325

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506
                   +  +E   K  ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI 
Sbjct: 326 ---QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIE 382

Query: 507 SIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +AQ +    +        K  K  +P D+        H       I  L   L  +L  
Sbjct: 383 GVAQHYGYDAIQSDEAIYGKGAKKGLPEDE---EVFFGHLARKIKAIQFLTSKLDSELTE 439

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           +    ++ +++ P+  ++  MEITGI++D   LK++  E S+ L  +EE IY  +GE+FN
Sbjct: 440 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFN 499

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           L+SPKQLG ILF K+  P   KTKTG   +TA D+ +      PI+ +IL +RQ++KI+S
Sbjct: 500 LNSPKQLGVILFEKMGLPVIKKTKTGY--STAVDVLEQLKEQAPIVADILTYRQIAKIQS 557

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY + L   I    + +HT Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+    
Sbjct: 558 TYVEGLLKVIQPDNK-IHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPRED 616

Query: 743 -KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRH 800
              + S+DYSQIELR+LAHI+    L + F    DIH   A  +FGV   E V+P MRR 
Sbjct: 617 NWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQ 676

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +NF I+YGIS + L+  L I R +A  YI  YF ++PG+ +Y+E+     +  GYVE
Sbjct: 677 AKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVE 736

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T++ RR +  +INS   ++R+  ER AIN PIQGSAADI + AMI + + L++ KL   M
Sbjct: 737 TLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATM 796

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LLQ+HDELVFEVPE E+   +Q++   ME A    ++L VPL  +      W E 
Sbjct: 797 LLQVHDELVFEVPESELEQLNQLVKEVMEHA----VSLHVPLITDSSWGKTWYEA 847


>gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae]
          Length = 877

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/987 (31%), Positives = 471/987 (47%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 289

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   +       IV+        ++      + F       +      +  A S  D
Sbjct: 290 LNMSSADVAEGLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           Q                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 Q--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   E  AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAEATAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4]
 gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4]
          Length = 885

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/989 (31%), Positives = 493/989 (49%), Gaps = 119/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K + L L+DG+S  +R+F+A        +  DGL  NAI GF  ML  +L+  +    
Sbjct: 1   MAK-DKLLLIDGNSIAFRSFFALHNSLEKFKNPDGLHTNAIFGFNKMLDSILKQYQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +   V FD    TFR E+Y DYK  R K P  L  Q+P ++     +GI   E+  +EA
Sbjct: 56  PTAALVAFDAGKTTFRTEMYDDYKGGRSKTPPELSEQMPYIKQLLTGYGIKTYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T +  AE++ + V +++ D+DL QL S  T +  T K     E+    HV +K G
Sbjct: 116 DDIIGTLSLAAERDNYEVVVVTGDRDLTQLSSAETTVAVTKKGVSEVEEYTPRHVKEKLG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I PE+++ L+ L                          G+  +     +++ +K   + +
Sbjct: 176 ITPEQIIDLKGLA-------------------------GDTSDNYPGVTKVGEKTALKLL 210

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            ++     L                L+ L        ++   L         ++   T  
Sbjct: 211 KQFGTIENLY-------------DNLDDLK-----PSKMKEHLIEDRDAAFTSKTLATIK 252

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA  +E  + D+   + K I    E  +    +T   +    Q +K   E+  +KL   
Sbjct: 253 RDAP-VEIGLADLKY-DGKNITFLQEFYQKMKFRTFLAAL---QQNKPTGEKVSEKLAYH 307

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L                    D  +W          +F +     +   S+    AI T
Sbjct: 308 VL--------------TKDTLPDFTKW------GKEINFYLEMPEKNYHLSEFCGFAIGT 347

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             +              L V    +   +          L +   N+  +    + K   
Sbjct: 348 DKE--------------LWVSDDVELLREP--------ALSEILANQKVVVNVFDGKRTY 385

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + LHR G+++     DI+L SY+LD+  +S+D+  +A +     +    +      K ++
Sbjct: 386 VGLHRLGVTLNSINYDILLQSYLLDTNDNSNDLGQLAHEHDIEDIKTDAEVYGTGAKRAV 445

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P   +    + EH     +VI +L   L+ +LI  +   +Y +++ P+  V+++MEI+GI
Sbjct: 446 PAKDV----LLEHLAHKIDVIGELGRRLQEELINNQQADLYWKIELPLSIVLAKMEISGI 501

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D++ L  + +E+++ L  LE  I+  +GE+FN++SPKQLG ILF KL+FP   KTKTG
Sbjct: 502 KVDRERLGAMQSELTERLSELESQIHQEAGEEFNINSPKQLGHILFEKLEFPVIKKTKTG 561

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA ++ +   G +PII +IL++R ++KIKSTY D L   I+   Q+VHT Y    T
Sbjct: 562 Y--STAVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S +PNLQNIPI+ + G+KIR+AF+       ++S+DYSQIELR+LAHI     L
Sbjct: 620 QTGRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHEGWHILSSDYSQIELRVLAHITGDHHL 679

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+   DIH   A  IFG+ +  +V+P +RR AK +NF I+YGIS + L+  + I R 
Sbjct: 680 QEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRK 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF  +PG+ +Y++ +    R+ GYVETI  RR +  +I++   S+R+  ER 
Sbjct: 740 DAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRRYLPDIHASNFSVRSFAERT 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI++   LE  +L T+MLLQ+HDEL+FEVP+EE++   +++  
Sbjct: 800 AMNTPIQGSAADIIKIAMINMQNELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPK 859

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    I L VPLKV     NNW + 
Sbjct: 860 VMDSA----IKLDVPLKVETSWGNNWYDA 884


>gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597]
 gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597]
          Length = 877

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/990 (31%), Positives = 471/990 (47%), Gaps = 132/990 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    +++++K GI 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGIT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+                          +I +K   + +LE
Sbjct: 178 PTQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVATTY 292
           +                      LE +  E+ +G +     + L   +    +++   T 
Sbjct: 213 HG--------------------SLEGI-YENIDGMKASKMKENLINDKEQAFLSKTLATI 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + +      G  IE        +   Q     + +S   +E        
Sbjct: 252 DTKA----PIEIGLEDLVYSGPDIENLGKFYDEMGFKQLKQALNVSSADVAESL------ 301

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                   + I +     ++  + I              F       +      +  A S
Sbjct: 302 -------DFTIVDQISQDMLTEESI--------------FHFELFGENYHTDDLVGFAWS 340

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             D+                      +T K  L +E     K F E        ++ K  
Sbjct: 341 CGDK--------------------LYATDKLELLQE--PIFKAFLE--KTPLRVYDFKKA 376

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
           K++LHR G+ ++    D  L  Y+L S    ++IA+IA  +      +      K  K +
Sbjct: 377 KVLLHRLGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKA 435

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P       +  EH     +V+++   +L  KL     L +   +++P+  V+++MEI G
Sbjct: 436 LP----EREKFLEHLARKLSVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAG 491

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L ++  E    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT
Sbjct: 492 ITVKKETLLEMQTENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKT 551

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    
Sbjct: 552 KTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDL 610

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   
Sbjct: 611 TQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEH 670

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+  L I R
Sbjct: 671 LIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISR 730

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER
Sbjct: 731 KEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAER 790

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+HDE+V EVP+ E+    +++ 
Sbjct: 791 TAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVK 850

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPL  +      W E 
Sbjct: 851 QTMEEA----IQLSVPLIADENEGATWYEA 876


>gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 932

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/994 (27%), Positives = 460/994 (46%), Gaps = 89/994 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M K+  L ++DG S  +RAF++  P   R   G+  NA+ GF +ML  +++  +     +
Sbjct: 1   MSKK-RLLVLDGHSLAFRAFFSRDPEHFRTSTGVYTNAVHGFFSMLLTMIRAEK----PT 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H    FD    +FR +IYPDYK  R + P   + Q+  ++    A GI  +     EADD
Sbjct: 56  HIGAAFDLSRHSFRTDIYPDYKGGRAETPPEFIGQVENIQKMLSAMGIKWLTEPNVEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           I+AT      K G  V + S D+D  QL+S    +    +     +++  + V  ++ + 
Sbjct: 116 ILATLATKGTKSGMEVLVSSGDRDSFQLISDDVTVLYPGRSISETKRMTPQAVKDRYDVW 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++   + AL G+  DN+PG+P +G K AA  + EYG+L+++L +   +K  KR EN+ +
Sbjct: 176 PQQYPEIAALVGEHADNLPGVPLVGEKVAASWINEYGSLDSLLEHRDELKG-KRGENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN---RVATTY 292
           + +    +R+L  LRTD+ + + LE L     +   +      LEF ++     R+   +
Sbjct: 235 HIDDVLRNRQLNRLRTDLQLPLSLEDLHWTGFDPQAIQEICDELEFKQMRTQILRLGQAF 294

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              + N +   ++++ T+ +    + +      +   Q   L    +        Q    
Sbjct: 295 GVTSINGDSATMELDRTQTEPEPQDADGYG--VVPEPQRFRLGSDFTATQFSDWLQNTQS 352

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
             L   +   I       + N +    ++            I+ D +       +  A++
Sbjct: 353 SSLGIWAVGNIG------VTNPRIDWLFLAAERDCQGQCVLIVPDELTPQTEHLLCDALA 406

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                                                              K  ++ K  
Sbjct: 407 -----------------------------------------------GDRKKTVYDAKSL 419

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-------ILKSR 524
           +  LH +G  + G   DI ++ Y+++   +    A + ++ L +   E       I +  
Sbjct: 420 RHALHAHGWELHGAVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDEKPSDISKISEQM 479

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV-----YERLDKPMIDV 579
              + ++   +S  Q       N  +  + LL+ +  +E+L H         L+ P+  +
Sbjct: 480 TLDLGVELDGNSSAQPWPQTLINQAIYAYALLQMQPTLEQLAHFRQVDGLLELENPLSYI 539

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           + +ME TGI ID   L + +  +   +   +++ +D  G + NLSSPKQL ++LFT+L+ 
Sbjct: 540 LEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLSSPKQLQEVLFTQLEL 599

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   KTKTG         E      +P ++ +L  R   K+      +L   +     R+
Sbjct: 600 PKTKKTKTGYTTDAKALEELARYNPHPFLEALLYHRDRIKLL-QIVRNLRERV-ADDGRI 657

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRIL 758
           HT +      TGRL+S++PNLQNIP +T  GQKIR AF+   P   L++ADYSQIE+RI+
Sbjct: 658 HTTFGQTVAATGRLSSIDPNLQNIPARTVDGQKIREAFVPQKPYAALMTADYSQIEMRIM 717

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L   F +  D+HR VAA ++GV  ++V+P  R H K  ++ + YG+S + LA
Sbjct: 718 AHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYGLSAYGLA 777

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I + +A   +  YF RF  + EY+ +      + GY ET+ GRR +  E+ S   +
Sbjct: 778 AQLNISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYTETMRGRRRYLPELRSTNRN 837

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           + +   RAA+NAPIQGSAAD+ + AM+ V   L   +L +++LLQ+HDELV EV   E  
Sbjct: 838 VADNARRAALNAPIQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETE 897

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
               ++  +M         LRVPL+V++ +  NW
Sbjct: 898 RLETLVRQAMTGVA----KLRVPLEVSVGIGPNW 927


>gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|332205064|gb|EGJ19127.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368]
          Length = 877

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/987 (32%), Positives = 473/987 (47%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q                     L++ 
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQA 289

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             +S   ++      IV+        ++      + F       +      +  A S  D
Sbjct: 290 LNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYLQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R   YVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
 gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
          Length = 881

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/991 (31%), Positives = 468/991 (47%), Gaps = 127/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +  +GL  NA+ GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYHQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI+S DKDL+QL    T +  + K     E+    ++ +K
Sbjct: 117 DDIIGTLDKMAEATSVPFEVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLKEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+                          +I +K   +
Sbjct: 177 MGLTPEQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGIK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +LEY                          I E  +  +     + L   K    ++ T
Sbjct: 212 LLLEYGSL---------------------DGIYEHIDEMKASKMKENLINDKEQAYLSKT 250

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                 N  P+ + ++     G  +E         +   F  L         E  P  + 
Sbjct: 251 LATIDTN-APIEIGLDDITYSGPHLENLAKF---YEEMGFKQLRQALDLSGEEAAPVAID 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
              +++++   +  DS+                       F       +      I  A 
Sbjct: 307 YTEVEQVTPDMLTEDSF-----------------------FHFEIFGDNYHTEPIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
            T  Q                ++ S D+    T         K+F E        ++ K 
Sbjct: 344 GTKGQ----------------LYASTDTALLQTP------IFKEFLE--KTPLKVYDFKR 379

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L    I++ +   D  L  Y+L S    ++I++IA  +    L        K  K 
Sbjct: 380 AKVLLSHLDITLQKPAFDSRLAKYLL-STVEDNEISTIASLYSQIALPLDEVVYGKGAKK 438

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +IP      + + EH      V+L     +  +L     L +   +++P+  V+++MEI 
Sbjct: 439 AIP----EKTALLEHLARKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKMEIA 494

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ +  E    L  L + IY+L+GE+FN++SPKQLG ILF KL  P     K
Sbjct: 495 GIKVERQTLEDMQVENEVVLERLTQEIYELAGEEFNINSPKQLGVILFEKLGLPLEYTKK 554

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ++KI+STY   L + I +  + +HT Y   
Sbjct: 555 TKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGK-IHTRYVQD 613

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+   
Sbjct: 614 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEEENSVLLSSDYSQIELRVLAHISGDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +F +   E V+P  RR+AK +NF ++YGIS F L+  L I 
Sbjct: 674 HLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGIS 733

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  YI+ YF R+PGI +Y+E+     R  GYVET+F RR    +INS   ++R   E
Sbjct: 734 RKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREIPDINSRNFNVRGFAE 793

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI + ++LE     TKMLLQ+HDE+V +VP +E+    +++
Sbjct: 794 RTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIKELV 853

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL+ +      W E 
Sbjct: 854 KETMESA----IELAVPLEADENEGKTWYEA 880


>gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301]
          Length = 877

 Score =  687 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/987 (32%), Positives = 474/987 (48%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+  +G KT   L         +L + S        E I E
Sbjct: 178 PAQFIDLKALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYE 221

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +  + S+                  + E+    +  +FL         ++   T D  
Sbjct: 222 NIDGMKTSK------------------MKENLINDKEQAFL---------SKTLATIDTK 254

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A    P+ + +      G  +E        +   Q      Q   ++S    + L    +
Sbjct: 255 A----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAEGLDFTIV 306

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            ++SQ  ++ +S                        F       +      +  A S  D
Sbjct: 307 DQISQDMLSEES-----------------------IFHFELFGENYHTDNLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L ++     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYLQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R   YVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
 gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
          Length = 885

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/989 (30%), Positives = 490/989 (49%), Gaps = 119/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K + L L+DG+S  +R+F+A        +  DGL  NAI GF  ML  +L+  +    
Sbjct: 1   MAK-DKLLLIDGNSIAFRSFFALHNSLEKFKNPDGLHTNAIFGFNKMLDSILKQYQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +   V FD    TFR E+Y DYK  R K P  L  Q+P ++     +GI   E+  +EA
Sbjct: 56  PTAALVAFDAGKTTFRTEMYDDYKGGRSKTPPELSEQMPYIKQLLTGYGIKTYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T +  AE++ + V +++ D+DL QL S  T +  T K     E+    HV +K G
Sbjct: 116 DDIIGTLSLAAERDNYEVVVVTGDRDLTQLSSAETTVAVTKKGVSEVEEYTPRHVKEKLG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I PE+++ L+ L                          G+  +     +++ +K   + +
Sbjct: 176 ITPEQIIDLKGLA-------------------------GDTSDNYPGVTKVGEKTALKLL 210

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            ++     L                L+ L        ++   L         ++   T  
Sbjct: 211 KQFGTIENLY-------------DNLDDLK-----PSKMKEHLIEDRDAAFTSKTLATIK 252

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    PV + +   +  G  I    +    +K   F       + +   +  ++   E
Sbjct: 253 RDA----PVEIGLADLKYDGKNITFLQEFYQKMKFRTF------LAALQQNKPTEEKVSE 302

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           +L                    D  +W          +F +     +   S+    AI T
Sbjct: 303 KLAYHVL---------TKDTLPDFTKW------GKEINFYLEMPEKNYHLSEFCGFAIGT 347

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             +              L V    +   +          L +   N+  +    + K   
Sbjct: 348 DKE--------------LWVSDDVELLREP--------ALSEILANQKVVVNVFDGKRTY 385

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + LHR G+++     DI+L SY+LD+  +S+D+  +A +     +    +      K ++
Sbjct: 386 VGLHRLGVTLNSINYDILLQSYLLDTNDNSNDLGQLAHEHDIEDIKTDAEVYGTGAKRAV 445

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P   +    + EH     +VI +L   L+ +LI  +   +Y +++ P+  V+++MEI+GI
Sbjct: 446 PAKDV----LLEHLAHKIDVIGELGRRLQEELINNQQADLYWKIELPLSIVLAKMEISGI 501

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D++ L  + +E+++ L  LE  I+  +GE+FN++SPKQLG ILF KL+FP   KTKTG
Sbjct: 502 KVDRERLGAMQSELTERLSELESQIHQEAGEEFNINSPKQLGHILFEKLEFPVIKKTKTG 561

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA ++ +   G +PII +IL++R ++KIKSTY D L   I+   Q+VHT Y    T
Sbjct: 562 Y--STAVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S +PNLQNIPI+ + G+KIR+AF+       ++S+DYSQIELR+LAHI     L
Sbjct: 620 QTGRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHEGWHILSSDYSQIELRVLAHITGDHHL 679

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+   DIH   A  IFG+ +  +V+P +RR AK +NF I+YGIS + L+  + I R 
Sbjct: 680 QEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRK 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I  YF  +PG+ +Y++ +    R+ GYVETI  RR +  +I++   S+R+  ER 
Sbjct: 740 DAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRRYLPDIHASNFSVRSFAERT 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI++   LE  +L T+MLLQ+HDEL+FEVP+EE++   +++  
Sbjct: 800 AMNTPIQGSAADIIKIAMINMQNELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPK 859

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    I L VPLKV     NNW + 
Sbjct: 860 VMDSA----IKLDVPLKVETSWGNNWYDA 884


>gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
 gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
          Length = 881

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/991 (31%), Positives = 480/991 (48%), Gaps = 127/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  L++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKSPFGLHTNAIYGFHLMLNHLMERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K PE    QLP +R      GI   ++  +EA
Sbjct: 57  PTHILVAFDAGKTTFRTEMYADYKGGRAKTPEEFREQLPFIREMLDKLGIRYYDLDQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     + VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAENTPVPYDVTIVSGDKDLIQLTDDNTIVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GDS DNI   PG+                       +I +K   +
Sbjct: 177 MGITPAQFIDLKALMGDSSDNI---PGVT----------------------KIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +LEY                                   +   +  ++ +K+   +   
Sbjct: 212 LLLEYGSL------------------------------EGIYDNIDQMKQSKMKENLIN- 240

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   ++ I+T     I +E  + +   IK  Q S   D+            + 
Sbjct: 241 -DKDIAFLSRTLVTIDTQAPIEIGLEDILYQGPNIK--QLSRFYDE------------MG 285

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            ++ ++  +  +  +    I   +  +   + L       F+++ D  +    + +  A 
Sbjct: 286 FKQFKQALEAEVEPEEAADIAFEEVTEVRPEMLSKDDFFYFEMLGD--NYHIDEMVGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
               Q                ++ SQD               K+F  N       ++ K 
Sbjct: 344 GNAQQ----------------IYASQDINLLQQP------AFKEFLGNTALK--VYDFKR 379

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L R GI + +   D  L  Y+L S   +++IA+IA  +      E      K  K 
Sbjct: 380 SKVLLSRLGIELSQPSFDSRLAKYLL-STVDNNEIATIANLYGKTRLVEDEVVYGKGAKR 438

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   I    +  H      V+++    +   L     L++   +++P+  V+++MEI 
Sbjct: 439 ALPEKAI----LLSHLARKVTVLVETEKPMTDLLRQHDQLNLLYEMEQPLAFVLAKMEIA 494

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI+++++ L+ +  E  + L  L + IYDL+GE+FN++SPKQLG ILF KL  P+    K
Sbjct: 495 GIKVERETLQTMQTENEEVLARLTQEIYDLAGEEFNINSPKQLGGILFEKLGLPTSFTKK 554

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI++ IL++RQ++KI+STY   L + I    + +HT Y   
Sbjct: 555 TKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGK-IHTRYLQD 613

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF+       L+S+DYSQIELR+LAHI+   
Sbjct: 614 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFVPEWKDSVLLSSDYSQIELRVLAHISGDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L + F +  DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F LA  L I 
Sbjct: 674 HLIEAFRHGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGIS 733

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  YI  YF R+PGI  Y+E      R  GYVET+F RR    +INS   ++R   E
Sbjct: 734 RKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREIPDINSRNFNVRGFAE 793

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI + ++L D    T+MLLQ+HDE+V EVPE E+T    ++
Sbjct: 794 RTAINSPIQGSAADILKIAMIRLDQALTDGNFKTRMLLQVHDEIVLEVPENELTAIKTLV 853

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              ME A    I L VPLK +      W E 
Sbjct: 854 KDIMESA----IELVVPLKADESAGKTWYEA 880


>gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico]
 gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia]
          Length = 853

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/975 (33%), Positives = 521/975 (53%), Gaps = 132/975 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    +  +VD   F++RA+YA P L     G P+  + GF N+L K L        A +
Sbjct: 1   MLHMANFVVVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADY 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD  +  FR+ +YP YK NRP++PE LL Q   +R A  A GI + E+  FEADD+
Sbjct: 56  IAVVFDTGSKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDV 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT +     E   V +I+ DKDL+QL+     ++D +K + +  E+V+ K+G+ P+K++
Sbjct: 116 IATLSTKYASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLL 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + ALTGD+ DNIPG+P IG KTAA L+ ++G+L+    N     +K  ++         
Sbjct: 176 DVLALTGDASDNIPGVPSIGVKTAARLINQFGSLD----NVLSCAEKVEQKK-------- 223

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              R++++   D       + L+  D     L+S  +A+EF   +N+ A        + E
Sbjct: 224 --CREMLIQHAD-------QALLSRD-----LVSLQRAVEFDGDLNKYAKKL----PDSE 265

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            ++  +   E   +           I+     SL     +  + + P+            
Sbjct: 266 QLLAFLEKYELNSL--------RGKIEQCYQISLESPDRQGGAGEMPESH---------- 307

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                        T+D   +++K E +G  +F          H+K   IA  T+++    
Sbjct: 308 -------------TEDPVAFLRKCENVGLLAF----------HAK---IADGTINELSVA 341

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
             +   +            T +    +  +   ++   ++  LKI H+ K    ++ R+ 
Sbjct: 342 YDREHAL------------TVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHF 385

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
             +  F+D+MLMSY LD+G   H +A +A ++L                         Q+
Sbjct: 386 PDLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLH------------------------QK 421

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                +  ++QL  ++R KL++++L  VY +L++P++ V+ +M+  G+++D ++LKQ+S 
Sbjct: 422 FPARLACTLVQLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQ 481

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQ 659
           +   ++ SLE+ IYDL+G KFN++S +QLG +LF ++   S   K  +G + T A+ L +
Sbjct: 482 DFHGSIRSLEKEIYDLAGCKFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTE 541

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +      I   +L+WR  SK+KSTY D+L   +   T+RVHT YS+ ST TGR++S  PN
Sbjct: 542 LAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPN 601

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI++  G +IR+AF++    KL+SADYSQ+EL+I+AHIA +      F    DIH 
Sbjct: 602 LQNIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHM 661

Query: 780 MVAAEIFGVNIEKVS-PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           + A +IFG   + V+ P++RR AK+INF IIYG+SPF LA  + I R EA+ Y+ +YF  
Sbjct: 662 VTAQQIFG---DGVTDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRS 718

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I  Y+E  K + R+ GY  T FGR+ +   INS + ++R   ERAAINAPIQG+AAD
Sbjct: 719 YPEIKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAAD 778

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + ++AMI++   LE       ++LQ+HDEL+ EVPE  +   ++++   ME       N 
Sbjct: 779 VVKKAMINLRNKLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NF 830

Query: 959 RVPLKVNIKVSNNWQ 973
            VPLKV+I V ++W 
Sbjct: 831 SVPLKVDIGVGSSWG 845


>gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
 gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
          Length = 875

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/973 (29%), Positives = 477/973 (49%), Gaps = 104/973 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA   L +   G P   + GF N ++ L    +++  + +    
Sbjct: 2   KSLTIIDTFGFFFRLYYAMSGL-KSQSGKPSGMVHGFANFIYNL----KQDFPSDYIVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR++I P+YKANR   P+ L  QLP+     +  G+ ++ ++G+EADDIIA++
Sbjct: 57  LDSGGKTFRSQIDPNYKANRVSPPQELKDQLPVCIDMIEKMGLCSLRVEGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              ++ +   + I++ DKDL QL+     ++   K+E  + +   +K+G+ PE++    A
Sbjct: 117 IKNSKDQDLEIRIVTHDKDLYQLIDDRVSIFSPAKKELYNRDGCYEKYGVYPEQIRDFLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+ GIG K A  LL E+G++EN+  N S+++ ++ +  + E  E A +S+
Sbjct: 177 LCGDSADNIPGVKGIGEKGAKKLLDEFGSIENLYENLSQVRNERTKNMLFESKENAFISK 236

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                                     RL +    LE   L N +  T +       P++ 
Sbjct: 237 --------------------------RLATLYDELETPNLQNAIFPTSN-------PLLK 263

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            I+T ++  ++                                    L  L+   +  I 
Sbjct: 264 VIDTLKDYSLSR----------------------------------LLATLKSSDEDKIL 289

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           + +   + +  ++ + ++ + +    SF   T + DA  +K +  +    +Q   TS+ V
Sbjct: 290 SFTPVLLTDESELIRLLEDMNSEIMISFDTETTSTDAKIAKIVGFSFCFNEQ---TSYYV 346

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISM 483
                 L V +            +I               IG N+KYD  +V + +GI  
Sbjct: 347 PLAHSYLGVESQISMNSAKWAISQIYKGF----------VIGQNLKYDFRIVANNFGIEP 396

Query: 484 -RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
            + + D M+++++ D   SS  + ++A+K  +Y   +     K       +      ++A
Sbjct: 397 PKNYSDTMILAWLDDPS-SSVGMDNLAKKLYNYETIKFESVVKKGEDFSSVDLQSASKYA 455

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            E++ + L+ +     KL  E +L++ + ++ P I  +  ME  GI+++ + L+ +    
Sbjct: 456 SEDAWITLKFYKTFTNKL-EESMLNIAKNVEFPFILTLFDMESNGIRLNLEKLRALILRN 514

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              L +L   IY+L  ++FN++S KQLG +LF  LK P+  KTKTG   +T + +     
Sbjct: 515 DSALRALTTEIYELCEQRFNINSSKQLGSVLFDYLKLPAKKKTKTGY--STDESVLSELL 572

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             +P I+ ILE+R+L K++STY + L N  I     RV+T +    T TGRL+S  PNLQ
Sbjct: 573 DLHPSIEKILEYRELYKLQSTYCEPLLNLAIKDENHRVYTNFIQTGTATGRLSSKNPNLQ 632

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP + +L + +R  F       LIS DYSQIELR+LAH +    L + F+N  DIH   
Sbjct: 633 NIPARGNLAKDMRAVFEPKDGYSLISLDYSQIELRLLAHFSCDPALIEAFKNGDDIHART 692

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A  IFG    + + Q R  AK+INF +IYG+   +L+ +L I +  A +YI RYF  F  
Sbjct: 693 AISIFG----ESNTQNRAIAKSINFGLIYGMGSNKLSNELSIDKKSAKEYIDRYFKAFST 748

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I ++++  KN  + +G+VET+ GR+ ++D   +       + ER A+N   QGSAADI +
Sbjct: 749 IKDFLDSIKNRAKNDGFVETLIGRKRYFDFGGAT-PMQLAMFEREAVNTKFQGSAADIIK 807

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V   L D     KMLLQIHDEL+FEV +E   + ++ +   M+      + L VP
Sbjct: 808 IAMIKVKDLLND---DAKMLLQIHDELIFEVRDEIAPSFAKNVQELMQTV----VALNVP 860

Query: 962 LKVNIKVSNNWQE 974
           L  N  ++ NW +
Sbjct: 861 LVANWGMAKNWGD 873


>gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
 gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
          Length = 864

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/969 (33%), Positives = 519/969 (53%), Gaps = 132/969 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             +VD   F++RA+YA P L     G P+  + GF N+L K L        A + AV+FD
Sbjct: 18  FVVVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFD 72

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             +  FR+ +YP YK NRP++PE LL Q   +R A  A GI + E+  FEADD+IAT + 
Sbjct: 73  TGSKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLST 132

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
               E   V +I+ DKDL+QL+     ++D +K + +  E+V+ K+G+ P+K++ + ALT
Sbjct: 133 KYASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLLDVLALT 192

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+P IG KTAA L+ ++G+L+    N     +K  ++            R++
Sbjct: 193 GDASDNIPGVPSIGVKTAARLINQFGSLD----NVLSCAEKVEQKK----------CREM 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           ++   D       + L+  D     L+S  +A+EF   +N+ A        + E ++  +
Sbjct: 239 LIQHAD-------QALLSRD-----LVSLQRAVEFDGDLNKYAKKL----PDSEQLLAFL 282

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              E   +           I+     SL     +  + + P+                  
Sbjct: 283 EKYELNSL--------RGKIEQCYQISLESPDRQGGAGEMPESH---------------- 318

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
                  T+D   +++K E +G  +F          H+K   IA  T+++      +   
Sbjct: 319 -------TEDPVAFLRKCENVGLLAF----------HAK---IADGTINELSVAYDREHA 358

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
           +            T +    +  +   ++   ++  LKI H+ K    ++ R+   +  F
Sbjct: 359 L------------TVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPDLGAF 402

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           +D+MLMSY LD+G   H +A +A ++L                         Q+     +
Sbjct: 403 DDVMLMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFPARLA 438

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
             ++QL  ++R KL++++L  VY +L++P++ V+ +M+  G+++D ++LKQ+S +   ++
Sbjct: 439 CTLVQLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSI 498

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDN 665
            SLE+ IYDL+G KFN++S +QLG +LF ++   S   K  +G + T A+ L ++     
Sbjct: 499 RSLEKEIYDLAGCKFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGV 558

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            I   +L+WR  SK+KSTY D+L   +   T+RVHT YS+ ST TGR++S  PNLQNIPI
Sbjct: 559 EIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPI 618

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           ++  G +IR+AF++    KL+SADYSQ+EL+I+AHIA +      F    DIH + A +I
Sbjct: 619 RSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQI 678

Query: 786 FGVNIEKVS-PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           FG   + V+ P++RR AK+INF IIYG+SPF LA  + I R EA+ Y+ +YF  +P I  
Sbjct: 679 FG---DGVTDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPEIKN 735

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E  K + R+ GY  T FGR+ +   INS + ++R   ERAAINAPIQG+AAD+ ++AM
Sbjct: 736 YMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKKAM 795

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I++   LE       ++LQ+HDEL+ EVPE  +   ++++   ME       N  VPLKV
Sbjct: 796 INLRNKLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVPLKV 847

Query: 965 NIKVSNNWQ 973
           +I V ++W 
Sbjct: 848 DIGVGSSWG 856


>gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11]
          Length = 912

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/985 (30%), Positives = 483/985 (49%), Gaps = 89/985 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + +    + A  
Sbjct: 2   KRAVLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINKFKPD----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    +  R EIY DYK+NR   PE L+ Q+P +     AF I   +I+G+EADD++ +
Sbjct: 56  FDVKRSSLKRTEIYSDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIEGYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWGIPP 176
                 K+   V I++ DKDL QLV     +    K  +          E VI   G+ P
Sbjct: 116 LAKKIAKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSEDVINYLGVVP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRE 231
           EK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +
Sbjct: 176 EKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            ++   + A +SR+L  +  D+ I++    L     N  +L S  K LEF   I ++   
Sbjct: 236 ILINEKDIAFMSRELAKIFIDLDISVEESGLQY-GMNREKLYSLCKILEFKMFIKKLGL- 293

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                          +   +     S  + T K  S +  ++  
Sbjct: 294 -------------------------------EEKPQNPTLFSFENITEKKESPKVVEEEK 322

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K     ++N     I +   + +  + L      +         + + + + I +
Sbjct: 323 EVEFTKEINLTLSNRELLIIDSENGLNEQKEYLSNYKKIA---------SIYYESLGIIL 373

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           ST D+          ++  L+            L    +S L           I +N K 
Sbjct: 374 STEDKD---------LYFPLNHGGLLAKNIDKNLVVNFISEL-------DIKFISYNFKS 417

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
               L   GI  +     M+++Y L S ++  D      ++ +   K+  K+    I ++
Sbjct: 418 ----LLNLGIKFKSMYMDMMIAYHLISSQTKIDPIIPITEYSTLEPKDF-KTAFGKINVE 472

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            I+     ++  + S  IL ++  L   L  E L  +    + P+I V+S ME  GI+ID
Sbjct: 473 LITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYKILMENEMPLIPVLSLMERKGIEID 532

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KTKTG + 
Sbjct: 533 VQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKTKTG-YS 591

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LE +      I + +L++R+L+K+K+TY D+LP  +++   R+HT ++   T TG
Sbjct: 592 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDE-NSRIHTTFNQIGTATG 650

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K   L + +
Sbjct: 651 RLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAY 710

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           +   D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP  +A++
Sbjct: 711 KEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASE 770

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  ER A+N 
Sbjct: 771 YIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNT 830

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQG+AA++ ++ M+ V+  L+D +    +LLQ+HDEL+FEV E  +   S+I+   M+ 
Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKE-DIALLLQVHDELIFEVEENSVEKYSEILADIMKN 889

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
               +    V L +NI +  NW E 
Sbjct: 890 TVQLE---DVKLNININIGKNWAEA 911


>gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87]
 gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87]
          Length = 887

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/981 (29%), Positives = 466/981 (47%), Gaps = 117/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLLS K  G+  NAI GF  +L K+++  +      HF V 
Sbjct: 13  DKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAIYGFAMLLEKIIKEEQPN----HFLVA 67

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 68  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKHYELENYEADDIIGTL 127

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A+K GF   II+ D+DL QL +    +Y T K     +      + +K+        
Sbjct: 128 SREADKAGFETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPSFIAEKY-------- 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                            G+  K    +    G+  + +   + + +K   + + +     
Sbjct: 180 ----------------DGLQPKQIIDMKGLMGDTSDNIPGVAGVGEKTAIKLLKQ----- 218

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             S + V    D             D    +L   L   +   L+++   T + ++    
Sbjct: 219 FTSVEGVYEHID-------------DVTAKKLKEKLVNSKDDALMSKDLATINVESP--- 262

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              +++   + K    +   ++    K  +F  L     +  +     +   E       
Sbjct: 263 ---IEVTLNDTKLENQDDNTNKIELFKKLEFKQLLADIDEEANNDVVNEKTFEIESDFQH 319

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              ++  +  I                         +  +      +       D     
Sbjct: 320 INFDSLEHAIIH---------------------FELEGTNYLKDNILKFGFYADDSHVVI 358

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + +    + D                      L ++ E+++ +K  ++ K   +  HR  
Sbjct: 359 NAEDIKQYQD----------------------LVQWLEDKNTIKTVYDAKKTYVAAHRLN 396

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           I ++    D+ML SY++D  RS  D+ S+   +     K+      K +K  +P +++  
Sbjct: 397 IDIQNVQFDVMLSSYIIDPSRSIDDVKSVVSLYGQNYVKDNVSVYGKGKKHQVPEEEV-- 454

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + +H    +  I      +  +L     + + + L+ P+  ++S+ME  GI  D + L
Sbjct: 455 --LNKHVASITEAIANSKPEMEAQLEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDL 512

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           KQ+  EI + L  L +NI++ +GE+FN++SPKQLG +LF  LK P   KTKTG   +TA 
Sbjct: 513 KQMENEIQEKLDVLIKNIHEAAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGY--STAV 570

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G++PII++ILE+RQLSK++STY + L   I+K  QR+HT ++     TGRL+S
Sbjct: 571 DVLEQLQGEHPIIEHILEYRQLSKLQSTYVEGLQKVISKD-QRIHTRFNQTLAQTGRLSS 629

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   L + F N 
Sbjct: 630 VDPNLQNIPIRLEEGRKIRKAFKPTDKDSVILSADYSQIELRVLAHITQDESLKEAFING 689

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A ++F V   +V   MRR AK +NF I+YGIS + L+  L I R +A  +I  
Sbjct: 690 NDIHTATAMKVFNVEANEVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDD 749

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FPG+ +Y+       +  GYVET+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 750 YLASFPGVKQYMSDIVKDAKAEGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQG 809

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+  ++ ++D      +LLQ+HDEL+FE+P+ E+   S+ +   ME+A   
Sbjct: 810 SAADIIKLAMVKFYEKVKDTNYHATLLLQVHDELIFELPKSEVEDFSKFVEEIMEQA--- 866

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            ++L VPLKV+      W + 
Sbjct: 867 -LDLDVPLKVDSSYGPTWYDA 886


>gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries]
 gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries]
          Length = 864

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/969 (33%), Positives = 518/969 (53%), Gaps = 132/969 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             +VD   F++RA+YA P L     G P+  + GF N+L K L        A + AV+FD
Sbjct: 18  FVVVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFD 72

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             +  FR+ +YP YK NRP++PE LL Q   +R A  A GI + E+  FEADD+IAT + 
Sbjct: 73  TGSKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLST 132

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
               E   V +I+ DKDL+QL+     ++D +K + +  E+V+ K+G+ P+K++ + ALT
Sbjct: 133 KYASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLLDVLALT 192

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD+ DNIPG+P IG KTAA L+ ++G+L+    N     +K  ++            R++
Sbjct: 193 GDASDNIPGVPSIGVKTAARLINQFGSLD----NVLSCAEKVEQKK----------CREM 238

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           ++   D       + L+  D     L+S  +A+EF   +N+ A        + E ++  +
Sbjct: 239 LIQHAD-------QALLSRD-----LVSLQRAVEFDGDLNKYAKKL----PDSEQLLAFL 282

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
              E   +           I+     SL     +  + + P+                  
Sbjct: 283 EKYELNSL--------RGKIEQCYQISLESPDRQGGAGEMPESH---------------- 318

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
                  T+D   +++K E +G  +F          H+K   IA  T+++      +   
Sbjct: 319 -------TEDPVAFLRKCENVGLLAF----------HAK---IADGTINELSVAYDREHA 358

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
           +            T +    +  +   ++   ++  LKI H+ K    ++ R+   +  F
Sbjct: 359 L------------TVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPDLGAF 402

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           +D+MLMSY LD+G   H +A +A ++L                         Q+     +
Sbjct: 403 DDVMLMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFPARMA 438

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
             ++QL  ++R KL++++L  VY +L++P++ V+ +M+  G+++D ++LKQ+S +   ++
Sbjct: 439 CTLVQLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSI 498

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDN 665
            SLE+ IYDL+G  FN++S +QLG +LF ++   S   K  +G + T A+ L ++     
Sbjct: 499 RSLEKEIYDLAGCTFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGV 558

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            I   +L+WR  SK+KSTY D+L   +   T+RVHT YS+ ST TGR++S  PNLQNIPI
Sbjct: 559 EIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPI 618

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           ++  G +IR+AF++    KL+SADYSQ+EL+I+AHIA +      F    DIH + A +I
Sbjct: 619 RSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQI 678

Query: 786 FGVNIEKVS-PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           FG   + V+ P++RR AK+INF IIYG+SPF LA  + I R EA+ Y+ +YF  +P I  
Sbjct: 679 FG---DGVTDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPEIKN 735

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E  K + R+ GY  T FGR+ +   INS + ++R   ERAAINAPIQG+AAD+ ++AM
Sbjct: 736 YMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKKAM 795

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I++   LE       ++LQ+HDEL+ EVPE  +   ++++   ME       N  VPLKV
Sbjct: 796 INLRNKLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVPLKV 847

Query: 965 NIKVSNNWQ 973
           +I V ++W 
Sbjct: 848 DIGVGSSWG 856


>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
 gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
 gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
          Length = 922

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/1005 (33%), Positives = 507/1005 (50%), Gaps = 112/1005 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLT-SPKGEPVGALYGFASMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+ IYP+YKANRP  PE L+ QLPLVR        P +E  G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V +IS+DKDL+QL+     +YD +K + I  + V+KK+G   +K+ 
Sbjct: 116 IATFAAKTAALGEDVVVISSDKDLLQLMGENIKIYDPLKGKYITEDDVVKKFGTTSDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  DNIPG+P IG KTA+ L+ ++G++                ENI    E  
Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITQFGSV----------------ENIFNSLEQV 219

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                                    + L  R       +AA I 
Sbjct: 220 -----------------------------------------SSLKQRETLQNSKEAALIS 238

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             ++ ++   N  +  +      +   + + +    +    +  +  + LF  ++    +
Sbjct: 239 WQLIGLD--SNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFKSLYKRAENLFDIKINDHKE 296

Query: 361 YPINNDSY-TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              N  +   +I N  ++  + +K E IG          +       +A+ +S  +Q   
Sbjct: 297 IVENKVTEAKEISNASELADFAKKAEKIGIFGIY-----LLQHKGDNVALILSLQNQS-- 349

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              K+     DL  + ++++             +     ++   KI +++K         
Sbjct: 350 YIIKISNTSHDLFSYNTKNNND------WFSDIIFNLLTDKSIRKITYSLKPLLKFYAEQ 403

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT------RKEILKSRKSSIPIDKI 533
              +   ED+ LM Y L +G S  ++   A K  +        R+E     ++       
Sbjct: 404 SHEITAIEDLELMQYALSAGLSQKNLFEEALKEDNRHLSKPAYREEFKGDTEALATAAYK 463

Query: 534 SDSQVQE-----------------HAIENSNVILQLWLLLRPK----LIVEKLLHVYERL 572
           S  +                    + I  S  I+  +  L  +    L   K   +Y  +
Sbjct: 464 SVREDASTGSTSKLPLETKFGKMSNVINESARIVAEFTSLYKQNILELKDNKAFRLYSNI 523

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           D P+  ++ +ME  GI++D + L Q+SAE    +L LEE I+ LSG KFN+ SPKQLG+I
Sbjct: 524 DLPICFILDKMEKIGIKVDANYLNQLSAEFGAEILKLEEEIFALSGTKFNIGSPKQLGEI 583

Query: 633 LFTKLKFPSGA-KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           LF K++ P G    K   + T A+ LE+++     I   +L WRQL+K+K+TY DSLP  
Sbjct: 584 LFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQ 643

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           I+  T RVHT +   ST TGRL+S EPNLQN+PI++  G KIR+AFI+    KLISADYS
Sbjct: 644 IDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYKLISADYS 703

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRIL+HIA I  L Q F N  DIH   A +IF +   +++ + RR AK INF IIYG
Sbjct: 704 QIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYG 763

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           IS F LA QL +   EA++YIK+YF  + G+ EY+E+TK F   NGYV   FGR+     
Sbjct: 764 ISAFGLAKQLNVSNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVINFFGRKCFVPL 823

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           I+  K  ++   ERAAINAPIQG+ ADI + AMI++ + +E + L T+++LQIHDEL+FE
Sbjct: 824 IHDKK--LKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKNNLKTRLVLQIHDELLFE 881

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           VPE+E+   + II   ME +     N+ VP+   I+V NNW E +
Sbjct: 882 VPEDEVELVTPIIKKIMENST----NMDVPIITEIRVGNNWMEIH 922


>gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c]
 gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c]
          Length = 971

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/982 (27%), Positives = 440/982 (44%), Gaps = 102/982 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG+S  YRAF+A P+ +     G P NA+ GF +ML   L++ +     +H AV
Sbjct: 79  PRLLLLDGNSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINALRDEQ----PTHVAV 134

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D PA TFR+  Y +YKA R + P   + Q+ L+     A  +P++    +EADDIIAT
Sbjct: 135 AWDLPAPTFRHAQYAEYKAGRAETPSDFVGQISLIHQVCDALAVPSLSAASYEADDIIAT 194

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                E  G  V I++ D+D +QLV+    +  T K      +   + V  K+G+ P + 
Sbjct: 195 LATQGEAAGMDVLIVTGDRDALQLVTGQVTVLMTRKGISDMVRYTPDEVEAKYGLTPAQY 254

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD                           + L +   + +K   + I ++   
Sbjct: 255 PDFAALRGDPS-------------------------DNLPSVPGVGEKTATKWIQQFGS- 288

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                 L  +              +    G  L   L  +   + +  +A     D    
Sbjct: 289 ------LAAMVDRAD--------EVSGKAGQSLRDHLGDVIRNRSLTELARDVPLD---R 331

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +P  L +   + + +         T   T QF  L ++  +  +   P         +  
Sbjct: 332 DPADLRLVPWDREAV--------HTLFDTLQFRVLRERLYQALAVVEPAAGDGGFAVEFD 383

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                       +   D+ +W+ +  T G+ +   +             IA++    K  
Sbjct: 384 A-----------LAPGDVTEWLAEHTTGGARTGLHLRGGWGRGTGTVAGIALAPPKGKAA 432

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                    LT      L  +  +    K  H++K   L L   
Sbjct: 433 -------------------WIDPTQLTPADEQALAGWLADPAKPKAAHDVKGPMLALAEL 473

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID----KIS 534
           G ++ G   D  L +Y+   G+ S D+  +  ++L    K         + +D     + 
Sbjct: 474 GFTLAGVTSDTALAAYLALPGQRSFDLGDLVLRYLHRELKADEAPSDGQLTLDVEVEGVE 533

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +S   E  +  +  + +L   L   L       +   ++ P++ V++ ME  GI  D + 
Sbjct: 534 ESAEAEVDVVRARAVGELADALDGDLERRSAARLLRDIELPLLTVLAGMERAGIAADAEY 593

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  + ++    +  + E  +++ G  FNL SPKQL  ILF +L  P   K KTG      
Sbjct: 594 LADLQSQYGTEVTKVVEAAHEIVGRPFNLGSPKQLQQILFEELGLPKTKKIKTGYTTDAD 653

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                    ++P+I  +L  R ++++K T  +SL   I+    R+HT ++     TGRL+
Sbjct: 654 ALAWLATNSEHPLIPTLLRHRDVARLK-TVVESLLPMID-DAGRIHTTFNQMIAATGRLS 711

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+T  G++IRRAF+  P    L++ADYSQIE+RI+AH++    L + F +
Sbjct: 712 STDPNLQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDAGLIEAFAS 771

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  VAA+ F + + +V P++RR  K +++ + YG+S + LATQL I   EA D ++
Sbjct: 772 GEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYGLAYGLSAYGLATQLGIHPDEARDQME 831

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +++    +  R++GY ETI GRR +  ++ S  S  R + ER A+NAPIQ
Sbjct: 832 AYFARFGGVRDFLRGVVDQARKDGYTETILGRRRYLPDLTSDNSQRRQMAERMALNAPIQ 891

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ V + L D  L +++LLQ+HDELV E+   E   A  ++   M  A  
Sbjct: 892 GSAADIIKIAMLGVDRGLRDAGLRSRLLLQVHDELVLEIAPGERERAEALVRAEMANA-- 949

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
               + VPL+V++   + W + 
Sbjct: 950 --YTMSVPLEVSVGSGHTWDDA 969


>gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564]
 gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564]
          Length = 877

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/987 (31%), Positives = 469/987 (47%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    +++++K GI 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGIT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+                          +I +K   + +LE
Sbjct: 178 PTQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           +                      LE +  E+ +G +       L   K    ++ T    
Sbjct: 213 HG--------------------SLEGI-YENIDGMKASKMKDNLINDKEQAFLSKTL--- 248

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                               I+T+   +  +K   +S    +      ++   K   + L
Sbjct: 249 ------------------ATIDTKAPIEIGLKDLVYSGPDVENLGKFYDEMGFKQLKQAL 290

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              S     +  +T +         + +      + F       +      +  A S  +
Sbjct: 291 NVSSADVAESLDFTIVDQ-------ISQDMLSEESIFHFELFGENYHTDDLVGFAWSCGE 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L +E     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQE--PIFKAFLE--KTPLRVYDFKKAKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           LHR+G+ ++    D  L  Y+L S    ++IA+IA  +      +      K  K ++P 
Sbjct: 380 LHRFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLIDDETFYGKGVKKALP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      ++++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLARKLAILVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENDLVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERSEDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
 gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
          Length = 905

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/981 (28%), Positives = 451/981 (45%), Gaps = 105/981 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG S  YRAF+A P  +     G   NA+ GF +ML  LL++       +H AV
Sbjct: 18  KRLLLLDGHSLAYRAFFALPAENFSTSTGQHTNAVYGFTSMLINLLRDEE----PTHLAV 73

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y +YKA R   P     Q+ LV+    A G+  +E+ G+EADDI+AT
Sbjct: 74  AFDVSRQTFRSEEYAEYKAGRATTPSEFKGQVSLVKEVLDAMGVTHLEVDGYEADDILAT 133

Query: 124 YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
            T  A + GF  V + S D+D +QLV     +   VK      ++    V +K+ +PPE+
Sbjct: 134 LTTQATQAGFDEVLLCSGDRDALQLVRDNVTVLYPVKGVSELTRMTPAAVEEKYSVPPER 193

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G+  DN+PG+PG+G KTAA  + +YG+L                E ++   +
Sbjct: 194 YSDLAALVGEKSDNLPGVPGVGPKTAAKWIGQYGDL----------------EGLVANVD 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                                     +   G  + + L  +   + +N++          
Sbjct: 238 QI------------------------KGKAGENVRAHLDGVLRNRRLNQLLVDVPLPVTP 273

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +    D N  E                   +F  L D+         P+      +  +
Sbjct: 274 DDLARHDWNRDE-----------VHRVFDGLEFKVLRDRLFATLGTAQPEAEGDVSVDGV 322

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                       ++   +++ W+  +           T    A  +    +AI+    + 
Sbjct: 323 ------------VLGDGEVETWLAGITGRAGLFVD-GTWAKGAGDAS--GLAIADESGR- 366

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++DL+           TL  E    L ++  +    K  H+ K     L  
Sbjct: 367 -------AAYVDLT-----------TLAPEDEQALAEWLADVTKAKALHDAKGPMHALAA 408

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G+++ G   D  + +Y++   + S+    +  ++      E  K       +D      
Sbjct: 409 RGLTLAGLTNDTAIAAYLVRPDQRSYGFEDLLLRYCHIELPETSKQAAGQGMLDLGDVGA 468

Query: 538 VQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            Q + A+  +  +  L   L   +     + +   L+ P+++V++ ME  GI +D D L 
Sbjct: 469 TQGDDAMARAAAVATLAAALDEAVADVGGIELMAELELPIVEVLATMEQAGIAVDLDALH 528

Query: 597 QVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           ++ A+    +++ +++ +D + GE+ NL SPKQL  +LF  L  P   KTKTG       
Sbjct: 529 ELEADYDAQVVAAQQDAWDAIGGEQVNLGSPKQLQVVLFETLGLPKTKKTKTGYTTDAEA 588

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             +      +P +  +L  R  SK++ST    L   I     R+HT Y      TGRL+S
Sbjct: 589 IADLSEKAPHPFLDALLRHRDASKLRST-VQGLIKSIGDDG-RIHTTYQQTIAATGRLSS 646

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIPI+T+ G++IRR F+       L+SADYSQIE+R++AH++    L Q F + 
Sbjct: 647 TDPNLQNIPIRTESGRRIRRVFVVGEGYDCLMSADYSQIEMRVMAHLSGDEGLIQAFNDG 706

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+HR V + +FGV   +V+ +MR   K +++ + YG+S F L+ QLRI  +EA   +  
Sbjct: 707 EDLHRFVGSRVFGVEPSEVTSEMRAKVKAMSYGLAYGLSAFGLSKQLRISTAEAQRLMDG 766

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+ +  +  R  GY ET+ GRR +  ++ S     R++ ER A+NAPIQG
Sbjct: 767 YFERFGGVRDYLRQIVDDARATGYTETMMGRRRYLPDLTSDNRQRRDMAERMALNAPIQG 826

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI ++AM+ V ++L    L +++LLQ+HDEL+ EV   E     +I+   M  A   
Sbjct: 827 SAADIMKKAMLGVDEALRAANLRSRVLLQVHDELIVEVGAGERDEVERIVREQMGAAA-- 884

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
             +L VPL VN+    +WQ+ 
Sbjct: 885 --DLAVPLDVNVGTGRSWQDA 903


>gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
 gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
          Length = 912

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/985 (30%), Positives = 485/985 (49%), Gaps = 89/985 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + +    + A  
Sbjct: 2   KRAVLLDVSAIMYRAYFANINFRTKNE--PTGAVYGFINTLLSIINEFKPD----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    +  R EIY DYK+NR   PE L+ Q+P +     AF I   +I G+EADD++ +
Sbjct: 56  FDVKRSSLKRTEIYSDYKSNRQSAPEDLITQIPRIEEVLDAFNINRYKIDGYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWGIPP 176
                 K+   V I++ DKDL QLV     +    K  +          + VIK  G+ P
Sbjct: 116 LAKKIAKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSDDVIKYLGVVP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRE 231
           EK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +
Sbjct: 176 EKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   + A +SR+L  + TD+ IT+  + L     +  +L S  K LEF   I ++   
Sbjct: 236 NLVNEKDIAFMSRELAKIFTDLDITVEEKGLQY-GMDREKLYSLCKILEFKMFIKKLGL- 293

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                          +   +     S  +   K  + +  ++  
Sbjct: 294 -------------------------------EEKPQNPTLFSFENTVEKKENPKIVEEKK 322

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K     ++N     I N   + +  + L      +         + + + + I I
Sbjct: 323 EVEFIKEINLTLSNREPLIIDNENILNEQREYLSNYKKIA---------SIYYEELGIII 373

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           ST +   D  F +                 KN     ++S++ +         I +N K 
Sbjct: 374 STEE--KDLYFPLNHGG----------LLAKNIDKNLVVSFISEL----DIKFISYNFK- 416

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
               L   GI+ +     M+++Y L S ++  D      ++     K+  K+    I ++
Sbjct: 417 ---ALLNLGINFKSMYMDMMIAYHLISSQTKIDPIIPIVEYSKLEPKDF-KTAFGKINVE 472

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            I+     ++    S  IL ++  L   L  E L  +    + P+I V+S ME  GI+ID
Sbjct: 473 LITAQDFSKYLSAISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMERKGIEID 532

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KTKTG + 
Sbjct: 533 VQYFKNYSLELDKELLKIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKTKTG-YS 591

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LE +      I + +L++R+L+K+K+TY D+LP  +++   R+HT ++   T TG
Sbjct: 592 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDE-NSRIHTTFNQIGTATG 650

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K   L + +
Sbjct: 651 RLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAY 710

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP  +A++
Sbjct: 711 REEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASE 770

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  ER A+N 
Sbjct: 771 YIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNT 830

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQG+AA++ ++ M+ V+  L+D +    +LLQ+HDEL+FEV E  +   S+I+   M+ 
Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKE-EIALLLQVHDELIFEVEESSVEKYSEILADIMKN 889

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
               +    V L +NI +  NW E 
Sbjct: 890 TVQLE---DVKLNININIGKNWAEA 911


>gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
 gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
          Length = 912

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/985 (30%), Positives = 486/985 (49%), Gaps = 89/985 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + +    + A  
Sbjct: 2   KRAVLLDVSAIMYRAYFANINFRTKNE--PTGAVYGFINTLLSIINEFKPD----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    +  R EIY DYK+NR   PE L+ Q+P +     AF I   +I G+EADD++ +
Sbjct: 56  FDVKRSSLKRTEIYSDYKSNRQSAPEDLITQIPRIEEVLDAFNINRYKIDGYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWGIPP 176
                 K+   V I++ DKDL QLV     +    K  +          + VIK  G+ P
Sbjct: 116 LAKKIAKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSDDVIKYLGVVP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRE 231
           EK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +
Sbjct: 176 EKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   + A +SR+L  + TD+ IT+  + L     +  +L S  K LEF   I ++   
Sbjct: 236 NLVNEKDIAFMSRELAKIFTDLDITVEEKGLQY-GMDREKLYSLCKILEFKMFIKKLGL- 293

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                                          +   +     S  +   K  + +  ++  
Sbjct: 294 -------------------------------EEKPQNPTLFSFENTVEKKENPKIVEEKK 322

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                K     ++N     I N   + +  + L      +         + + + + I I
Sbjct: 323 EVEFIKEINLTLSNREPLIIDNENILNEQREYLSNYKKIA---------SIYYEELGIII 373

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           ST +   D  F +                 KN     ++S++ +         I +N K 
Sbjct: 374 STEE--KDLYFPLNHGG----------LLAKNIDKNLVVSFISEL----DIKFISYNFK- 416

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
               L   GI+ +     M+++Y L S ++  D      ++     K+  K+    I ++
Sbjct: 417 ---ALLNLGINFKSMYMDMMIAYHLISSQTKIDPIIPIVEYSKLEPKDF-KTAFGKINVE 472

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            I+     ++    S  IL ++  L   L  E L  +  + + P+I V+S ME  GI+ID
Sbjct: 473 LITAQDFSKYLSAISIGILAIYDELNYLLKKEDLYKILMKNEMPLIPVLSLMERKGIEID 532

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL  PSG KTKTG + 
Sbjct: 533 VQYFKNYSLELDKELLKIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKTKTG-YS 591

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LE +      I + +L++R+L+K+K+TY D+LP  +++   R+HT ++   T TG
Sbjct: 592 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDE-NSRIHTTFNQIGTATG 650

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K   L + +
Sbjct: 651 RLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAY 710

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               D+H + A  IF + + E VS + R  AK INFSIIYG +PF LA +L+IP  +A++
Sbjct: 711 REEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASE 770

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   I+S   +I++  ER A+N 
Sbjct: 771 YIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNT 830

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQG+AA++ ++ M+ V+  L+D +    +LLQ+HDEL+FEV E  +   S+I+   M+ 
Sbjct: 831 VIQGTAAEVLKKVMVKVYDVLKDKE-EIALLLQVHDELIFEVEESSVEKYSEILADIMKN 889

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
               +    V L +NI +  NW E 
Sbjct: 890 TVQLE---DVKLNININIGKNWAEA 911


>gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
 gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
          Length = 932

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/991 (27%), Positives = 460/991 (46%), Gaps = 83/991 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M K+  L ++DG S  +RAFY+  P   R   G+  NA+ GF +ML  +++  +     +
Sbjct: 1   MSKK-RLLVLDGHSLAFRAFYSRDPEHFRTSTGVYTNAVHGFFSMLLTMIRAEK----PT 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H    FD    +FR +IYPDYK  R + P   + Q+  ++    A GI  +     EADD
Sbjct: 56  HIGAAFDLSRHSFRTDIYPDYKGGRAETPLEFIGQVENIQKMLSAMGIKWLTEPNVEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           I+AT      K G  V + S D+D  QL+S    +    +     +++  + V  ++ + 
Sbjct: 116 ILATLATKGTKSGMEVLVSSGDRDSFQLISDDVTVLYPGRSISETKRMTPQAVKDRYDVW 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++   + AL G+  DN+PG+P +G K AA  + EYG+L+++L +   +K  KR EN+ +
Sbjct: 176 PQQYPEIAALVGEHADNLPGVPLVGEKVAASWINEYGSLDSLLEHRDELKG-KRGENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + +    +R+L  LRTD+ + + LE L     +   +    + LEF ++  ++       
Sbjct: 235 HVDDVLRNRQLNRLRTDLQLPLSLEDLHWTGIDPQAIQEICEELEFKQMRTQILKL--GQ 292

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A  +  +  D  T E      E E                           PQ+  L   
Sbjct: 293 AFGVTSINGDSATMELDSTQTEPEPQ---------------DADGYGVVPEPQRFRLGLD 337

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                           + +     W+Q             + ++  +    I +    +D
Sbjct: 338 ----------------LTSAQFADWLQN----------TQSSSLGIWAVGNIGVTNPRID 371

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                + +       L V        +N L   +              K  ++ K  +  
Sbjct: 372 WLFLAAERDCQGQCVLIVPDELTPQMENLLCNALA---------GDRKKTVYDAKSLRHA 422

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-------ILKSRKSS 527
           LH +G  M G   DI ++ Y+++   +    A + ++ L +   E       I +     
Sbjct: 423 LHAHGWEMHGAVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDEKPSDISKISEQMTLD 482

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV-----YERLDKPMIDVVSQ 582
           + ++   +S  Q       N  +  + LL+ +  +E+L H         L+ P+  ++ +
Sbjct: 483 LGVELDGNSSAQPWPQTLINQAIYAYALLQMQPTLEQLAHFRQVDGLLELENPLSYILEK 542

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME TGI ID   L + +  +   +   +++ +D  G + NLSSPKQL ++LFT+L+ P  
Sbjct: 543 MEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLSSPKQLQEVLFTQLQLPKT 602

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG         E      +P ++ +L  R   K+      +L   +     R+HT 
Sbjct: 603 KKTKTGYTTDAKALEELARYNPHPFLEALLYHRDRIKLL-QIVRNLRERV-ADDGRIHTT 660

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHI 761
           +      TGRL+S++PNLQNIP +T  GQKIR AF+   P   L++ADYSQIE+RI+AH+
Sbjct: 661 FGQTVAATGRLSSIDPNLQNIPARTVDGQKIREAFVPQKPYTALMTADYSQIEMRIMAHL 720

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    L   F +  D+HR VAA ++GV  ++V+P  R H K  ++ + YG+S + LA QL
Sbjct: 721 SGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYGLSAYGLAAQL 780

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I + +A   +  YF RF  + EY+ +      + GY ET+ GRR +  E+ S   ++ +
Sbjct: 781 NISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYTETMQGRRRYLPELRSTNRNVAD 840

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
              RAA+NAPIQGSAAD+ + AM+ V   L   +L +++LLQ+HDELV EV   E     
Sbjct: 841 NARRAALNAPIQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETERLE 900

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            ++  +M         LRVPL+V++ +  NW
Sbjct: 901 ALVRQAMTGVA----KLRVPLEVSVGIGPNW 927


>gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO]
          Length = 838

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/944 (31%), Positives = 463/944 (49%), Gaps = 121/944 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++Q  +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ F V ++S D+DL QL S    +  TVK     E    EHV +K+ 
Sbjct: 116 DDIIGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I               
Sbjct: 176 GLTPKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY-------------- 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E+ +  + S+                  + E+    +  +FL          ++AT  
Sbjct: 222 --EHIDEMKQSK------------------MKENLINDKEQAFLSK--------KLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV + I++ + +G  ++  +      K   F+    + + +  E     +  
Sbjct: 253 ----NTSAPVDVSIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILF 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E + +  +     D                        +  +     +    + + +A  
Sbjct: 306 EVVHEFKEEMFTTD-----------------------MALYVEMMGDNYHTEEIVGVAWG 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T         K   +  DLSV  ++                  +  +   LK  ++ K  
Sbjct: 343 TE--------KKIYVTNDLSVFENR--------------AFHSWITDPTRLKKVYDAKRT 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +        K  K  
Sbjct: 381 YVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKG 440

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P ++        H       I  L   L  +L  +    ++ +++ P+  ++++MEI+G
Sbjct: 441 LPEEE---ELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISG 497

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   KTKT
Sbjct: 498 IKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKT 557

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    
Sbjct: 558 GY--STAVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGK-VHTRYVQTL 614

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIPI+ D G+KIR+AF+       + S+DYSQIELR+LAHI+    
Sbjct: 615 TQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEH 674

Query: 767 LYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS + L+  L I R
Sbjct: 675 LKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISR 734

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +INS   +IR+  ER
Sbjct: 735 KAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAER 794

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELV
Sbjct: 795 TAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELV 838


>gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
 gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
          Length = 882

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/976 (29%), Positives = 480/976 (49%), Gaps = 106/976 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L DG S   RAFY  PLL+ K  G   NAI GF NM+  +++  + +    +  +
Sbjct: 2   KQKLLLFDGHSIANRAFYGVPLLTNKS-GQYTNAIYGFLNMMLSIMEKEKPD----YLGI 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E   DYK NR  +PE L  Q+PL++   +A  I  IE +GFEADD++ T
Sbjct: 57  TFDLSVPTFRHEFSADYKGNRKGMPEELRVQIPLLKKVLKAMHIHIIEKEGFEADDVLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKIDIEHVIKKWGIPPEKMVCL 182
                EK G  VT++S D+DL Q+ S    +     K+   +IE    K           
Sbjct: 117 LAKAGEKAGMQVTVVSGDRDLFQITSDMIEIKIPRTKKTGTEIESFFAK----------- 165

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
                  +    G+  I +     L+   G+  + +     I +K   + I EY      
Sbjct: 166 ------DVVETYGVSPIAFVDVKGLM---GDASDNIKGVPGIGEKTAIKLIKEYGS---- 212

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                       I   L+   ++     +L   L         +++  T  CD     P+
Sbjct: 213 ------------IENLLDQ--VDQITQKKLKENLMTYAQDARDSKMLATIICDV----PL 254

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           V   +  E     +  + +     +  +  SL  +  K+ +E   +   ++  Q      
Sbjct: 255 VYKWSDFEFD---LALDSEATALFRDLELKSLLTKLPKMENEAIAEAEEVKVEQWK---- 307

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                      T D ++++Q+ +                   + + IA    D       
Sbjct: 308 -----------TTDFEKFLQESKD------------------QMVGIAYFVEDN------ 332

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
              T+ + +++      +  +    E  + L +F E+  + KI H+ K  K  L + G+ 
Sbjct: 333 ---TLGLGVAIGERVGYSEWDLTDTEAKAVLIEFLESATYQKIVHDSKNFKHELLKVGLG 389

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS----YTRKEILKSRKSSIPIDKISDSQ 537
           + G   D  + +Y+L     S+D+A + + +++       + +L   KS     ++ D +
Sbjct: 390 LNGVCFDTFIAAYLLHPTNKSYDLAELEELFINKQSLMNLENLLGKGKSQKTWLQLEDEE 449

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
              +  + S + L +   ++  L  + +  ++  ++ P+IDV+  ME+ GI++D + L+ 
Sbjct: 450 RINNLGKRSQLALSVTEAMKEALQEQNMTRLFYDIEMPLIDVLFDMEVEGIKVDPEGLRS 509

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+   L +L  +IY+ +GE FN++SPKQLG ILF KL  P   KTKTG   +TA ++
Sbjct: 510 YGEELQGLLDTLTTSIYEAAGESFNINSPKQLGVILFEKLGIPCAKKTKTGY--STAAEV 567

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +    D PI+  ILE+RQ +K+KSTY D L N + ++ +   TF +   T TGRL+S E
Sbjct: 568 LEALKNDYPIVAQILEYRQYAKLKSTYVDGLLNVLTEQNKIHSTF-NQTITATGRLSSTE 626

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP+K ++G+KIR+ F+        +  DYSQIELR+LAH++    L + F+ ++D
Sbjct: 627 PNLQNIPVKFEMGKKIRQLFVPSSENHIFLDGDYSQIELRVLAHMSGDPTLIKAFKENID 686

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH + A+++F V  E V+   R +AK +NF I+YGIS F L+  L+I + EA  YI  YF
Sbjct: 687 IHALTASQVFHVPFEDVTSMQRSNAKAVNFGIVYGISAFALSEDLKISQKEAQKYIDGYF 746

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P I  Y+++  +F  QNGYVET++ R+    EI +   ++R   +R A+N PIQG++
Sbjct: 747 EKYPCIKAYLDEIIDFAMQNGYVETLYHRKREIPEILASNYNMREFGKRVAMNTPIQGTS 806

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI VH+ L++H L +K++L +HDEL+ +  ++E+    +++   ME A     
Sbjct: 807 ADIIKIAMIRVHQKLKEHSLKSKLILTVHDELLIDAHKDEVEIVKKLLKEEMEHAA---- 862

Query: 957 NLRVPLKVNIKVSNNW 972
           +L VPL V++    NW
Sbjct: 863 DLSVPLVVDVHQGANW 878


>gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG]
 gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF]
          Length = 914

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/978 (27%), Positives = 442/978 (45%), Gaps = 99/978 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++ +     +HFA
Sbjct: 24  RPRLMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASMLANTLRDEQ----PTHFA 79

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    T+R E + +YKANR K P+    Q+ L+             ++GFEADDIIA
Sbjct: 80  VAFDVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIA 139

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE  GF V I++ D+D  QLVS  T +    K      +   E V +++G+ P +
Sbjct: 140 TLATQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQ 199

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G                          K   + I ++  
Sbjct: 200 YPDFAALRGDPSDNLPGIPGVGE-------------------------KTAAKWITQFGS 234

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A    +LV                 E+  G    +F   LE  KL  R+         +
Sbjct: 235 FA----ELVE--------------RAEEVKGKAGQNFRDHLEAVKLNRRLTEMVRDVPLD 276

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P  L+    + K +A+  +          +     D  ++   E   + + L+     
Sbjct: 277 KAPEDLERAAYDRKQLAVLLDTLEIRNPSLRERLLAVDPGAEQEQEPVTEDVALDATLVP 336

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   +                    LE  G+A   + T       +  +A          
Sbjct: 337 ANGKLAP-----------------WLEEHGNAVLGVATVDTWKLGAGEVAEVALAAAGGA 379

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
              F+                    +L ++       +  +    K+ H+ K    V   
Sbjct: 380 AAWFEPS------------------SLDEDDERAFADWLGDPERPKVMHDAKGLMRVFGE 421

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           +G+++ G   D  L +Y++  GR +  + +++ ++L    +E++ +++S   +   +D +
Sbjct: 422 HGMTVAGVAMDTALGAYLVKPGRRTFALDALSLEYLG---RELVPAQESDGQLAFGADDE 478

Query: 538 VQEH-AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            Q    +  +  IL L   L  +L       +   ++ P   ++++ME  GI  D++ L+
Sbjct: 479 TQARTLMVEARTILDLGTALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADREHLE 538

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++  + +  +       +   G +FNL SPKQL ++LF  L  P   KTKTG        
Sbjct: 539 EMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGGLNLPKTRKTKTGYTTDADSL 598

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  ++ +   +L  R+ +K++ST  + L   I     R+HT ++     TGRL+S 
Sbjct: 599 AWLAGQTEHELPVLMLRHREQAKLRST-VEGLIKSIAPDG-RIHTTFNQTVAATGRLSST 656

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L   F +  
Sbjct: 657 DPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGE 716

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR VA  +F V    V  +MRR  K +++ + YG+S F L+ QL I   EA   +  Y
Sbjct: 717 DLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAGEARALMDTY 776

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+ +     R  GY  T+ GRR +  ++NS     R   ER A+NAPIQG+
Sbjct: 777 FERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGT 836

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+   E     +I+   M  A    
Sbjct: 837 AADIVKIAMLGVDRALREAELTSRMLLQVHDEIVLELAPGEREPVEEILRREMAAAA--- 893

Query: 956 INLRVPLKVNIKVSNNWQ 973
             LR PL V++ V  +W+
Sbjct: 894 -QLRAPLTVSVGVGRDWE 910


>gi|332701547|ref|ZP_08421635.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
 gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
          Length = 882

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/976 (29%), Positives = 448/976 (45%), Gaps = 105/976 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  ++L+DGS+F YR FYA   +SR  DG P NA+     +L KLL+  R +    H A
Sbjct: 10  DQEPVYLIDGSAFFYRGFYAFRDMSR-SDGFPTNALFVVLRLLIKLLREERPK----HLA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            + D P   FR++++  YKA R   PE LL Q   +R   +  GIP I  +G EADD IA
Sbjct: 65  FVLDGPGKNFRHDLFKPYKAQRSATPEDLLKQNAPLRRGVELLGIPLIVSEGGEADDCIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKI-DIEHVIKKWGIPPEKMV 180
           +     + E   V I+  DKDL Q +     ++D   K EK+  +E   ++ G+ P    
Sbjct: 125 SLVTRLKAE-RPVVIMGADKDLNQCLDERVFIWDPALKSEKLATLESFRQEQGMEPGHWP 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GDS DNIPG+PGIG KTA  ++ E+  LE I  +   +  K  +  + E+ + A
Sbjct: 184 DYQALIGDSSDNIPGVPGIGPKTATKIMAEHRTLEEIEAHLDEL-PKTLQAKLREHIQDA 242

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              R+L  LRTD   T+ L+ L   + +  ++  FL   EF  L                
Sbjct: 243 YTYRQLTRLRTDFCATLGLDSLAWREPDWKQVQDFLAEYEFRSL---------------- 286

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P  L   T     +A           + S FS  ++        +TP    L        
Sbjct: 287 PRELPQPTRAEPAVAAPAATAEPANAQLSLFSPGANAVVAPGGAETPAAPPLPVRDADQA 346

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           + +                  ++   +G               +  + I    L    + 
Sbjct: 347 FLLPG----------------RQGRDVGLVMID---------GAILLGIGHEELRWTGNV 381

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                 +    SV T                 LK+            +   D   L    
Sbjct: 382 RELCNALREAASVATPS---------------LKELL----------HASEDWACL---- 412

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
             +  + D+ L +Y+L+    S+D   +                + S+ +D  +++   +
Sbjct: 413 -PLDRWFDLGLAAYLLNPEERSYDWQRL----------------RDSLALDPDAEAVHPQ 455

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                +  +     +L  +L    L  +   L+ P++ V+  ME  GI ID+   +   +
Sbjct: 456 ANGLAAKAL---HDVLAKRLAAANLTELLRDLEMPLVPVLVAMEQAGIAIDKAAFESFLS 512

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E++  +  L   I+ ++   FN+ S +QL  +LF +L   +  KT  G   T    LE++
Sbjct: 513 EVNAQIGELTSRIHAVAEMPFNIRSNQQLAQLLFDRLGLKAKGKTPGGAQSTANPVLEKL 572

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++P++ +ILE+R L K++STY + LP   +++  R+HT ++  +T TGRL+S  PNL
Sbjct: 573 R-NEHPVVADILEFRMLEKLRSTYLEPLPKLADEQG-RIHTTFNQLATATGRLSSSAPNL 630

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+   G ++R  F + P   L +ADYSQIELR+LAH+++   L + F +  DIH  
Sbjct: 631 QNIPIRGPQGTRMRACFTAGPGCLLAAADYSQIELRVLAHMSQDPTLLEAFRHGQDIHAR 690

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IF  +  +V+P  RR AKTINF ++YG+ P +LA +L I  ++A ++I+RYF    
Sbjct: 691 TAGLIFDKDAGQVAPDERRSAKTINFGLLYGMGPQKLAAELGIALAQAKEFIERYFVGLS 750

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + E+ +       QNG V T+ GRR    +I+S   +++    R AIN  IQGSAADI 
Sbjct: 751 KLKEFYDSIVKEAEQNGSVVTMLGRRRLLPDIHSRNDNLKAQAVRQAINTRIQGSAADII 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI  H   +   L  +++LQ+HDEL+ E PE     A   +   M       + L V
Sbjct: 811 KLAMIRAHADEKIRALGGRLILQVHDELLLETPEATAQEAGARMKEIM----AGIVELSV 866

Query: 961 PLKVNIKVSNNWQEEN 976
           PL V++ V  NW E +
Sbjct: 867 PLVVDMGVGRNWAEAH 882


>gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321]
 gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321]
          Length = 877

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/987 (31%), Positives = 470/987 (47%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNATGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    E++++K GI 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKMGIT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+                          +I +K   + +LE
Sbjct: 178 PTQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           +                      LE +  E+ +G +     + L   +    ++ T    
Sbjct: 213 HG--------------------SLEGI-YENIDGMKASKMKENLINDREQAFLSKTL--- 248

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                               I+T+   +  ++   +S    +      ++   K   + L
Sbjct: 249 ------------------ATIDTKAPIEIGLQDLVYSGPDVENLGKFYDEMGFKQLKQAL 290

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              S     +  +T +         + +      + F       +      +  A S  D
Sbjct: 291 NVSSADVTESLDFTIVDQ-------ISQDMLSEESIFHFELFGENYHTDDLVGFAWSYGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L +E     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQE--PIFKDFLE--KTPLRVYDFKKAKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+ +G+ ++    D  L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LNHFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLARKLAVLIETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KTYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+T   +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELTEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
 gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
          Length = 881

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/991 (31%), Positives = 470/991 (47%), Gaps = 127/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +  +GL  NA+ GF  ML  LL+  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYHQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI+S DKDL+QL    T +  + K     E+    ++ +K
Sbjct: 117 DDIIGTLDKMAETTSVPFDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLKEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+                          +I +K   +
Sbjct: 177 MGLTPEQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGIK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +L+Y                          I E  +  +     + L   K    ++ T
Sbjct: 212 LLLKYGSL---------------------DGIYEHIDEMKASKMKENLINDKEQAYLSKT 250

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                 N  P+ + ++     G  +E         +   F  L         E  P  + 
Sbjct: 251 LATIDTN-APIEIGLDDITYTGPHLENLAKF---YEEMGFKQLRQALDLSGEEAAPVAID 306

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
              +++++   +  DS+                       F       +      I  A 
Sbjct: 307 YTEVEQVASDMLTEDSF-----------------------FHFEIFGDNYHTEPIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
            T  Q                ++ S D+    T         K+F E        ++ K 
Sbjct: 344 GTKGQ----------------LYASTDTGLLQTP------IFKEFLE--KTPLKVYDFKR 379

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L   GI+++    D  L  Y+L S    ++I++IA  +    L        K  K 
Sbjct: 380 AKVLLSHLGITLQNPAFDSRLAKYLL-STVEDNEISTIASLYSQIALPLDEVVYGKGVKR 438

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +IP   +    + EH      V+L     +  +L     L +   +++P+  V+++MEI 
Sbjct: 439 AIPERAV----LLEHLALKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKMEIA 494

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ +  E    L  L + IY+L+GE+FN++SPKQLG ILF KL+ P     K
Sbjct: 495 GIKVERQTLEDMQVENEVVLERLTQEIYELAGEEFNINSPKQLGVILFEKLELPLEYTKK 554

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  ILE+RQ++KI+STY   L + I +  + +HT Y   
Sbjct: 555 TKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGK-IHTRYVQD 613

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIP++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+   
Sbjct: 614 LTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEEENSVLLSSDYSQIELRVLAHISGDE 673

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F++  DIH   A  +F +   E V+P  RR+AK +NF ++YGIS F L+  L I 
Sbjct: 674 HLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGIS 733

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA  YI+ YF R+PGI +Y+E+     R  GYVET+F RR    +INS   ++R   E
Sbjct: 734 RKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETLFKRRREIPDINSRNFNVRGFAE 793

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI + ++LE     TKMLLQ+HDE+V +VP +E+    +++
Sbjct: 794 RTAINSPIQGSAADILKIAMIHLDQALEAGAYKTKMLLQVHDEIVLQVPSDELAAIKELV 853

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    I L VPL+ +      W E 
Sbjct: 854 KETMESA----IELAVPLEADENEGKTWYEA 880


>gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
 gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
          Length = 879

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/982 (29%), Positives = 475/982 (48%), Gaps = 113/982 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K   + L+DGSS I+RAF+A P L+   DG+  N + GF  M        + +    +
Sbjct: 1   MSK--TVMLIDGSSLIFRAFFALPKLTNN-DGVMTNGVYGFLTMYNNAFDRYKPD----Y 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD  + TFR++ + DYK  R K+P  L  Q  +++    +  +   ++ GFEADDI
Sbjct: 54  VLVAFDRASKTFRHKEFEDYKGTRDKMPSELSYQFGILKDILDSLNVKYTDLDGFEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           + TY  +A++ G+   +I+ D+D +QLV     +  T K     ++  ++ + +++    
Sbjct: 114 VGTYAKMAQEAGYESVLITGDRDYLQLVDEKIVVNLTKKGVSETKEYTVDTIKEEF---- 169

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
                   L+   +  + G+               G+  + +     I  KK    I +Y
Sbjct: 170 -------GLSPKQLIEVKGLE--------------GDKSDNIPGVDGIGPKKAIGFIQKY 208

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                              +      ++         T  D +A
Sbjct: 209 G---------------------------------SIEGLYDHIDEVSGKKTKQTLIDSEA 235

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                  +    T      +E ++  +  +K     SL ++ SK N      K   +   
Sbjct: 236 IAYMSKKIGTIVTS---APVEFDL-EELKVKDPDLESLREKYSKYN----FNKFLEDMDG 287

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S     + +Y K+ N     + ++ ++     +FK I +     HS+   + I T D 
Sbjct: 288 GDSPKEDKDFTYEKLENP---DKLIEAIKKNKEFTFKSIYEGDRYIHSEIYKLGIKTTDT 344

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                                          + +S  K+ FE+E  +K   +IK D ++L
Sbjct: 345 PTYIIDP----------------------DSDFVSKFKEIFEDEEIVKNSFDIKEDVVLL 382

Query: 477 HRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDK 532
            + GI+++  ++D+MLM Y++D  RSS+D+  ++Q +L Y  K   ++L   K ++    
Sbjct: 383 DKLGINLKLPYDDMMLMHYLIDPSRSSYDLKVLSQSYLDYEVKSPVDLLGKGKKALKYQD 442

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +   ++  +     N I     +L  KL    +L +Y+ ++  +  V++ MEI G   D+
Sbjct: 443 LDFDELGNYLASGINAIEDSKEILEDKLDEYHMLDLYKEIEIKLSKVLADMEIVGFVTDK 502

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L+ +   I K++  + E IY+L+G +FN++S KQLG++LF  L  P   KTKTG + T
Sbjct: 503 KVLEDLKENIDKDIDKITEEIYELAGSEFNINSTKQLGEVLFKDLDLPVIKKTKTG-FST 561

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            AQ LE++    + II  I  +R+L K++STY + L   I++  +   TF       TGR
Sbjct: 562 NAQVLEKLR-DKHQIIPKIERYRELFKLRSTYIEGLEKAIDEDGRIRSTFR-QNIAATGR 619

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQN+PIKTD G+ IR+AF +   K LI ADYSQIELRILA ++    +   F+
Sbjct: 620 LSSQDPNLQNLPIKTDEGRLIRKAFRAEEGKILIDADYSQIELRILASLSGDRHMIDAFK 679

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +DIH   A+++F  +++KV+ + R  AK +NF IIYGIS + L+  L IPR EA +YI
Sbjct: 680 EGVDIHTKTASKVFHTDLDKVTKRQRSEAKAVNFGIIYGISDYGLSQNLNIPRKEAKEYI 739

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             Y   +P I EY++      +++GYVET+F RR +  EINS   ++R+  +R A+N PI
Sbjct: 740 DNYMASYPSIKEYMDSIVEKAKEDGYVETLFKRRRYVPEINSRNFNVRSFGQRVALNTPI 799

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI   K+L+   L  K++LQIHDE++ E  E     A +I+  SME A 
Sbjct: 800 QGTAADIIKIAMIETDKNLKKAGLDAKIVLQIHDEIILEADESSKDEAIKILRESMENAT 859

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
               +L VPL V+I    +  E
Sbjct: 860 ----DLEVPLIVDIDTGVSMYE 877


>gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909]
          Length = 876

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/981 (29%), Positives = 469/981 (47%), Gaps = 117/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K+++  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKIIKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++  F   II+ D+DL QL +    +Y T K     +    E + +K+        
Sbjct: 117 SRQADEADFETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPEFIAEKY-------- 168

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             Q L    I ++ G+               G+  + +   + + +K     +L   E+ 
Sbjct: 169 --QGLVPKQIIDMKGL--------------MGDTSDNIPGVAGVGEKTAI-KLLNQFESV 211

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               +                  +E+    +L   L   +   L+++   T +  +    
Sbjct: 212 EGVYE-----------------HIEEVTAKKLKEKLINSKDDALMSKDLATINVHSP--- 251

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              ++++  + K    +   ++    K  +F  L       ++ +       E  Q    
Sbjct: 252 ---VEVSLEDTKLTLQDDTAEKIELFKKLEFKQLLADIDTSSNNEEVIDKTFEIEQDFQN 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
              N+ +                      A      +  +      +     T       
Sbjct: 309 VDFNDLN---------------------EAVIHFELEGTNYLKDAILKFGFYT------- 340

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                   + ++    +D              L ++ E+++  KI ++ K   +  HR G
Sbjct: 341 ----NHQHVVINADDVKDY-----------KNLVQWLEDKNTTKIVYDAKKTYVSAHRLG 385

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           I++     D+ML SY++D  RS  D+ S+   +     K+      K +K  IP + I  
Sbjct: 386 INIENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDNITVFGKGKKHHIPEESI-- 443

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + EH    +  I  +  +++ +L     + + + L+ P+  ++S+ME  GI  D + L
Sbjct: 444 --LNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDL 501

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  EI K L  L  NI++ +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA 
Sbjct: 502 KEMEFEIQKKLDVLISNIHESAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAV 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G++PII +ILE+RQLSK++STY + L   I+K   R+HT ++     TGRL+S
Sbjct: 560 DVLEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKD-HRIHTRFNQTLAQTGRLSS 618

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   L   F N 
Sbjct: 619 VDPNLQNIPIRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESLKHAFING 678

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  
Sbjct: 679 HDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDD 738

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FPG+ +Y+       +  GYVET+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 739 YLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQG 798

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+   + +++ K   K+LLQ+HDEL+FE+P+ E+   S+ +   ME+A + 
Sbjct: 799 SAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV- 857

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L VPLKV+      W + 
Sbjct: 858 ---LDVPLKVDSNYGATWYDA 875


>gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
 gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
          Length = 886

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/991 (31%), Positives = 487/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 7   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 62

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 63  PTHVLVAFDAGKTTFRTELFADYKAGRAKTPDEFREQFPYIRDMLGALGIAFYELEHYEA 122

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++ K
Sbjct: 123 DDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLMDK 182

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+                          +I +K   +
Sbjct: 183 MGLTPEQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGLK 217

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + EY                      LE +  +  +            F     +    
Sbjct: 218 LLHEYG--------------------SLEGI-YQHVD-----------SFKPSKMKENLL 245

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
           +D + A +   +  INT+    I +E  + +   +         D+ S+   E    +L 
Sbjct: 246 HDKEQAFLSKTLATINTSAPIAIGLEDIVYQGPDL---------DRLSQFYDEMDFVQLK 296

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                +L Q P+   +Y ++ + +                F+ + D  +    + I  A 
Sbjct: 297 NALASQLPQEPVAEIAYQEVTDIRA-----DMFSDDTVFYFEALRD--NYHREELIGFAW 349

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
               Q   ++        D+S+ T+                 KK  E        ++ K 
Sbjct: 350 GNQGQIYASA--------DISLLTT--------------ELFKKVLEQP---IATYDFKR 384

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L   G+ +     D  L +Y+L S    +++A++A+ +    L        K  K 
Sbjct: 385 SKVLLSHLGLDLPAASYDARLANYLL-STVEDNEMATLARLYTTIPLDTDEVVYGKGVKR 443

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P      + +  H      V+L    ++  KL   +   +Y  ++ P+ +V+++MEI 
Sbjct: 444 AVP----DKAVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLAKMEIE 499

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI ++QD L++++ +    +  L + IY+++GE FN++SPKQLG ILF K++ P     K
Sbjct: 500 GIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVFNINSPKQLGVILFEKMQLPLHLTKK 559

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     R+HT Y   
Sbjct: 560 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADG-RIHTRYLQD 618

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 619 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDE 678

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F+   DIH   A  +FG+   E V+   RR+AK +NF I+YGIS F L+  L IP
Sbjct: 679 HLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGIP 738

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI +Y+E+     +  GYVET+F RR    +INS + ++R+  E
Sbjct: 739 RKQAKAYIDTYFERYPGIKDYMERVVREAKDKGYVETLFKRRRQLPDINSRQFNVRSFAE 798

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L      TKMLLQ+HDE+V EVP  E+    +++
Sbjct: 799 RTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAAVKELV 858

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    +NL VPL+V+     +W E 
Sbjct: 859 KETMESA----VNLAVPLRVDESAGKSWYEA 885


>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
 gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
          Length = 904

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/983 (30%), Positives = 491/983 (49%), Gaps = 91/983 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQK   + LVD   F++R+F+A P L R  +G P   + GF  +L K  +    +++   
Sbjct: 2   MQK---IILVDTFGFLFRSFFALPPL-RDKEGFPTGLLQGFGALLLKFQKEIGLQNVIFA 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                      FR  +YP YK+ R +IP+ L  QLP+V    +   + ++ I+G+EADD+
Sbjct: 58  L-----EGGKNFRKTLYPKYKSTRQEIPQDLALQLPIVMEWIKRMKLTSVSIEGYEADDV 112

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT + +A K+G+ V I S DKDL QL++   CL+D +K+  I  E  ++K+G+ P++ +
Sbjct: 113 IATLSNLAVKKGYEVEIYSHDKDLYQLINEGICLFDPIKKIPIKAEQCLEKYGVHPQQFI 172

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRRENILEYA 237
             Q+L GDS+DN+PGIP IG KTA  L+  +G+LE I      ++    KK    ILE+ 
Sbjct: 173 DFQSLVGDSVDNVPGIPSIGPKTAQKLIHHFGSLEEIYARTEELEGVVSKKIASKILEHK 232

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E A LSRKLV LR DV         +    N    + S L+  +  K++ R+        
Sbjct: 233 EEAYLSRKLVSLRKDVLEDFSFGSSLEGGSNPMLAIASDLEEYQLYKILQRLKKLPTTQG 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +     I   +             +  K S+F                         
Sbjct: 293 TPKKIRAKGIGGVD------------YSPQKKSEF------------------------- 315

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                   +     I   +++   +  + +    ++   T+ +DA  ++ +  +    D 
Sbjct: 316 --------HCIPHLITEERELFALLDSIPSDALIAYDCETNGLDALQARLVGFSFCF-DG 366

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLV 475
                  +   ++ +         GK   TK+    ++K F       +GHN+K+D  + 
Sbjct: 367 IHGYYVPISHDYLGV---------GKQVDTKDAKRAIEKIF---SHPIVGHNLKFDLMIA 414

Query: 476 LHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
              + ++  R  +D ML++Y+LDS  S   +  + +K+         +  K       + 
Sbjct: 415 KANFNLTPKREIQDSMLLAYLLDS-ASMMGLDILMEKFFGKKMIAYDEVVKKGKTFGDVD 473

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQMEITGIQID 591
             +  E+A E++     L   L+ +L  ++   LL + + L+ P I+V++ ME  GI+ID
Sbjct: 474 LERASEYASEDAVACFCLQERLKEELQAKRCAHLLELAKDLEYPFIEVLADMEYQGIKID 533

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            +  + +   +S+ L   EE I+  + + FN++SPKQL  +LF  LK     + K G   
Sbjct: 534 VEWFEALKESLSEALSQKEEEIFAHAKQNFNINSPKQLSRVLFDDLKLRGLRRVKGGY-- 591

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T +   +     +PII  ++E+R++ K+K+TYA+ +      +  ++HT +S   T TG
Sbjct: 592 STDEKTLEELKDSHPIIPILMEYREIFKLKNTYAEPILKL-RTKENKIHTSFSQTGTTTG 650

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S  PNLQNIP++T+ G++IRR FI+   KKLIS DYSQIELR+LAH ++   L   F
Sbjct: 651 RLSSRSPNLQNIPVRTEAGKQIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLDAF 710

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              LDIH   A  +FG    + +   R  AKTINF +IYG+   +L+  L+I  +EA +Y
Sbjct: 711 RKDLDIHLRTAQMVFG----EDAKNKRHIAKTINFGLIYGMGTRKLSQTLKISNTEAKEY 766

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I RYF  FP + +++   +  + + GY +T+ G R +++         R+   R  INA 
Sbjct: 767 IDRYFASFPTVRQFLRTEEEQILRRGYAQTLLGHRRYFNFKGVGDFM-RSNFLREGINAI 825

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
            QGSAAD+ + +M  ++++ ++     KMLLQ+HDEL+F+ PEEE   A++ I + M   
Sbjct: 826 FQGSAADLMKLSMNKIYQTFQNSG--VKMLLQVHDELIFQSPEEEAEDAAREIENIM--- 880

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 LRVPL+ N+ +  NW +
Sbjct: 881 -NGVYELRVPLRCNVAIGQNWAD 902


>gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
 gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
          Length = 878

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/977 (30%), Positives = 474/977 (48%), Gaps = 107/977 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NAI GF  +L K+++  +     +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAILGFAKLLEKIIREEQ----PTHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKHYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           +  A++  F   I++ D+DL QL +    +Y T K    D++H   ++            
Sbjct: 117 SKEADQNDFETIIVTGDRDLTQLATQNVTIYYTKKG-VTDVDHYTPEF------------ 163

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
                 +   G+  I       L+   G+  + +   + + +K     +L   ++     
Sbjct: 164 ----IAEKYNGLKPIQIIDMKGLM---GDSSDNIPGVAGVGEKTAI-KLLNQFDSVEGVY 215

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +                  ++  +G +L   L+      L+++   T +       P+ +
Sbjct: 216 E-----------------NIDKVSGKKLKEKLELSHEDALMSKELATIN----RYSPIEV 254

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            +N T+   I    E  +    K  +F  L        SE      F +  +++S   + 
Sbjct: 255 TLNDTKLSDINDNHE--KIELFKKLEFKQLLADIDNKASE------FEQEQKQVSFDILP 306

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y                  +  A      D  +      +       ++        
Sbjct: 307 TFEYV-------------DFNHLDEAVIHFEIDGSNYLKDDILKFGFYDKER-------- 345

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I +     +D              L K+ ENE+  K+ ++ K   ++ HR  I+++
Sbjct: 346 ---YIVVDADNIKDYP-----------ELIKWLENENSKKVVYDAKKTFVIAHRLNINIQ 391

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQ 539
               D ML SY++D  R+  D+ S+   +     KE      K +K  +P  +I    + 
Sbjct: 392 NIVFDAMLASYIIDPSRTIDDVYSVVTNYHQTYVKEDVSIYGKGKKRHVPDTEI----LN 447

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  I  +  L+  +L   + +++ + L+ P+  ++S+ME  GI  D + L+ + 
Sbjct: 448 THIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDVNDLQHMQ 507

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + L  L + I+D +GE+FN++SPKQLG +LF  LK P   KTKTG   +TA D+ +
Sbjct: 508 QELQEKLELLVQRIHDAAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGY--STAVDVLE 565

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++PII +ILE+RQL+K++STY + L   I+   +R+HT ++     TGRL+S++PN
Sbjct: 566 QLQNEHPIINDILEYRQLAKLQSTYVEGLQKVISND-KRIHTRFNQTLAQTGRLSSVDPN 624

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   L + F +  DIH
Sbjct: 625 LQNIPIRLEEGRKIRKAFKPSSEDSVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIH 684

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++FGV  E+V+  MRR AK +NF I+YGIS + L+  L I R EA  +I  Y   
Sbjct: 685 TATARKVFGVEAEEVTDLMRRQAKAVNFGIVYGISDYGLSQSLNITRKEAKIFIDDYLAS 744

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPG+ +Y+       + NGYVET+  RR +  +I S   ++R   ER A+N PIQGSAAD
Sbjct: 745 FPGVKQYMSDIVKDAKANGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAAD 804

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+   K ++      K+LLQ+HDEL+FEVP+ E+   S  +   ME A    ++L
Sbjct: 805 IIKLAMVEFDKQVQHTSYKAKLLLQVHDELIFEVPKSEVEEFSLFVEDIMEHA----LDL 860

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+      W + 
Sbjct: 861 DVPLKVDSNYGPTWYDA 877


>gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
 gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
          Length = 877

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/977 (30%), Positives = 473/977 (48%), Gaps = 108/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLLS K  G+  NAI GF  +L K+L+  +      HF V 
Sbjct: 2   DKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAIYGFAMLLEKILKEEQPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R   P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQSTPPELSEQFPYIRQLLDAYHIKYYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           +  AE  G    II+ D+DL QL +    +Y T             K G+       +  
Sbjct: 117 SKQAEASGLETIIITGDRDLTQLATDHVTIYYT-------------KKGVT-----DVDH 158

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T + I       G+  K    +    G+  + +   + + +K   + + +       S 
Sbjct: 159 YTPEFIAEKYN--GLLPKQIIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQ-----FHSV 211

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           + V    D             + +G +L   L+  +    +++   T +CD + I+  + 
Sbjct: 212 EGVYNHLD-------------EVSGKKLKENLENSKADAFMSKDLATINCD-SPIKVNLK 257

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D    +      + E+ +    K  Q  +  D ++  N+ +T Q   +        +  +
Sbjct: 258 DTIMGDLNDNKDKIELFQKLEFK--QLLNDIDSSASENNSETEQNFEV-------IHHFD 308

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           N ++ K+ N                A      D  +    K +   +   +Q    S + 
Sbjct: 309 NINFKKLDN----------------AIIHFEIDGSNYLKDKILKFGLYAQNQYIVISAED 352

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +                        L ++ EN+H  KI  + K   +  HR  I+++
Sbjct: 353 IHQYT----------------------ELIEWLENDHNNKIVFDAKKTYVAAHRLEINLQ 390

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQ 539
             + D+ML SY+++  R+  D+ S+   +     K       K +K  +P+D +    ++
Sbjct: 391 HIDFDVMLASYIINPSRTIEDVQSVVSYYNQNFVKSDIAVYGKGKKRQVPLDDV----LE 446

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H       I     L+   L     + +   L+ P+  +++ ME TGI  D + LK++ 
Sbjct: 447 VHIAAIMQAIYNCKPLMSDILSDHNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQ 506

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + L +L   IY+ +GE FN++SPKQLG +LF  LK P   KTKTG   +TA D+ +
Sbjct: 507 NELQEKLDNLVSEIYEAAGESFNINSPKQLGIVLFETLKLPIIKKTKTGY--STAVDVLE 564

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G +PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++PN
Sbjct: 565 QLQGKHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSIDPN 623

Query: 720 LQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAH+ +   L + F +  DIH
Sbjct: 624 LQNIPIRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDDIH 683

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   
Sbjct: 684 AATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYGISDYGLSQNLGITRKKAKAFIDDYLAS 743

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPG+ +Y+       + NGYVET+  RR +  +I S   ++R+  ER A+N PIQGSAAD
Sbjct: 744 FPGVKQYMTDIVKDAKANGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAAD 803

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+   K++ +     K+LLQ+HDEL+FEVP+ E+   S+ +   M+ A    + L
Sbjct: 804 IIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVPKSEVQDFSEFVEEIMDNA----LTL 859

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPL V+      W + 
Sbjct: 860 AVPLLVDSSYGATWYDA 876


>gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
 gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
          Length = 877

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/987 (31%), Positives = 468/987 (47%), Gaps = 126/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    E++++K GI 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKLGIT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNIPG+                          +I +K   + +LE
Sbjct: 178 PTQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           +                      LE +  E+ +G +       L   K    ++ T    
Sbjct: 213 HG--------------------SLEGI-YENIDGMKASKMKDNLINDKEQAFLSKTL--- 248

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                               I+T+   +  ++   +S    +      ++   K   + L
Sbjct: 249 ------------------ATIDTKAPIEIGLEDLVYSGPDVENLGKFYDEMGFKQLKQAL 290

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              S     +  +T +         + +      + F       +      +  A S  D
Sbjct: 291 NVSSADVTESLDFTIVDQ-------ISQDMLSEESIFHFELFGENYHTDDLVGFAWSCGD 343

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                      +T K  L +E     K F E        ++ K  K++
Sbjct: 344 K--------------------LYATDKLELLQE--PIFKDFLE--KTPLRVYDFKKAKVL 379

Query: 476 LHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPI 530
           L+R+G+ ++    D  L  Y+L S    ++IA+IA  +      +      K  K +IP 
Sbjct: 380 LNRFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP- 437

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                 +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI +
Sbjct: 438 ---EREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITV 494

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
            ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT   
Sbjct: 495 KKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLALPLEYTKKTKTG 554

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T T
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQT 613

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L +
Sbjct: 614 GRLSSVDPNLQNIPARLEQGRLIRKAFVPEWENSVLLSSDYSQIELRVLAHISKDEHLIK 673

Query: 770 VFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
            F+   DIH   A  +FG+   E V+   RR+AK +NF ++YGIS F L+  L I R EA
Sbjct: 674 AFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEA 733

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AI
Sbjct: 734 KAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAI 793

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +M
Sbjct: 794 NSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTM 853

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E+A    I L VPL  +      W E 
Sbjct: 854 EEA----IQLSVPLIADENEGATWYEA 876


>gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63]
          Length = 854

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/973 (27%), Positives = 455/973 (46%), Gaps = 125/973 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L  VDG+S + RAFY    L+ K DG   NAI GF  ML+K+    + E      A+ F
Sbjct: 2   RLLAVDGNSIVNRAFYGIRPLTTK-DGQFTNAIYGFLTMLYKI----KNEENPDAVAIAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++ Y  YKA R  +PE L  Q+  ++      G   +  +GFEADDI+ T  
Sbjct: 57  DLKTPTFRHKAYAGYKATRKGMPEELASQMEPLKKLLTLLGYRLVTCEGFEADDILGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD--TVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              E+ G    I + D+D +QLVS  T ++     ++     E +++ +G+ P++++ ++
Sbjct: 117 KACEENGNECVIATGDRDSLQLVSDKTSVHLCSNKQDILYTPEKILETYGVTPKELIEIK 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           A+ GD+ DNIPG+ GIG K A  L+Q Y  +E I  +   +          E  +  R  
Sbjct: 177 AIQGDTSDNIPGVAGIGPKGAGDLIQRYHTVEYIYDHLDEL----------EIKDGVR-- 224

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL   + +  ++  L  +                              D +  N    +
Sbjct: 225 KKLTASKENAILSRMLGEINCNAP------------------------VDTNVENYVVDM 260

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            D +  E  G   + E+          FS +     K++    P+K+    L+       
Sbjct: 261 KDAD--ECAGFMAKLEL----------FSLIEKYGIKVDKNAKPEKVEKNSLE------- 301

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                  +V+  D  + ++ +++         T+  +                      K
Sbjct: 302 -------VVSDFDENELLKNVKSEKKLYLNFETENKE---------------------LK 333

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              +  D  V+ S D                KF  +    K   NIK          I +
Sbjct: 334 SFAVLFDGKVYISTDE-----------ELFVKFIADSELEKYTRNIKTLYAYADEKNIDV 382

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                DI L +Y+++     +   ++   +               I +   +D Q +++ 
Sbjct: 383 ENIVFDIELAAYLIEPSSKDYSDKNLCASY--------------EIALPVCTDEQNEKYE 428

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
                  L     L  K+       +   ++ P+  V+++ME  G+ +D+  ++     +
Sbjct: 429 AFACYAELC--EKLGDKIKAHGQEKLLSEIEIPLAKVLARMENIGVCVDRQGIESYGEML 486

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           S  +  LE  IY+ +G +FN++SPKQLG +LF  L  P   KTK+G + T A+ LE +  
Sbjct: 487 SAQIKELETAIYESAGCEFNINSPKQLGVVLFENLGLPCKKKTKSG-YSTNAEVLESLRY 545

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            ++P+++ +L +R LSK+ STY + L   I     R+H+ ++   T TGR++S EPNLQN
Sbjct: 546 -EHPVVEMVLRYRTLSKLNSTYCEGLLKVI-ADDGRIHSNFNQTETRTGRISSTEPNLQN 603

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T+LG+++R+ F +     L+ ADYSQIELR+LAHI+    + + F+++ DIH + A
Sbjct: 604 IPVRTELGREMRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAITA 663

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +++F + ++ V+P MR  AK +NF I+YGI  F LA  + +   EA  YI+ Y   + G+
Sbjct: 664 SQVFNMPLDMVTPIMRSRAKAVNFGIVYGIGAFSLAKDIGVSNKEAKHYIESYLAHYSGV 723

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y++        +GYVET+FGRR +  E+ S K  IR   ER A N PIQG+AADI + 
Sbjct: 724 DSYMKNVVEKANADGYVETMFGRRRNLPELTSSKHMIRAFGERVARNMPIQGTAADIIKI 783

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI V + ++   L  +++LQ+HDEL+ E P++E    + I+   ME A    + + VPL
Sbjct: 784 AMIKVDERMKAENLRARLVLQVHDELIVEAPQDESMRVALIVQEEMENA----VKMSVPL 839

Query: 963 KVNIKVSNNWQEE 975
             +  +   W + 
Sbjct: 840 TADAAIGRTWYDA 852


>gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 899

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/991 (31%), Positives = 486/991 (49%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 20  MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 75

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 76  PTHVLVAFDAGKTTFRTELFADYKAGRAKTPDEFREQFPYIRDMLGALGIAFYELEHYEA 135

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    +++ K
Sbjct: 136 DDIIGTLDKMAERTELPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLMDK 195

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+                          +I +K   +
Sbjct: 196 MGLTPEQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGLK 230

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + EY                      LE +  +  +            F     +    
Sbjct: 231 LLHEYG--------------------SLEGI-YQHVD-----------SFKPSKMKENLL 258

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
           +D + A +   +  INT+    I +E  + +   +         D+ S+   E    +L 
Sbjct: 259 HDKEQAFLSKTLATINTSAPITIGLEDIVYQGPDL---------DRLSQFYDEMDFVQLK 309

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                +L Q P+   +Y ++ + +                F+ + D  +    + I  A 
Sbjct: 310 NALASQLPQEPVAEIAYQEVTDIRA-----DMFSDDTVFYFEALRD--NYHREELIGFAW 362

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
               Q   ++        D+S+ T+                 KK  E        ++ K 
Sbjct: 363 GNQGQIYASA--------DISLLTT--------------ELFKKVLEQP---IATYDFKR 397

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKS 526
            K++L   G+ +     D  L +Y+L S    +++A++A+ +    L        K  K 
Sbjct: 398 SKVLLSHLGLDLPAASYDARLANYLL-STVEDNEMATLARLYTTIPLDTDEVVYGKGVKR 456

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P      + +  H      V+L    ++  KL   +   +Y  ++ P+ +V+++MEI 
Sbjct: 457 AVP----DKAVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLAKMEIE 512

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI ++QD L++++ +    +  L + IY+++GE FN++SPKQLG ILF K++ P     K
Sbjct: 513 GIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVFNINSPKQLGVILFEKMQLPLHLTKK 572

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I     R+HT Y   
Sbjct: 573 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADG-RIHTRYLQD 631

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 632 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDE 691

Query: 766 PLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F+   DIH   A  +FG+   E V+   RR+AK +NF I+YGIS F L+  L IP
Sbjct: 692 HLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGIP 751

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E+     +  GYVET+F RR    +INS + ++R+  E
Sbjct: 752 RKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQLPDINSRQFNLRSFAE 811

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ ++L      TKMLLQ+HDE+V EVP  E+    +++
Sbjct: 812 RTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPSHELAAVKELV 871

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    +NL VPL+V+     +W E 
Sbjct: 872 KETMESA----VNLAVPLRVDESAGKSWYEA 898


>gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
          Length = 877

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/977 (30%), Positives = 467/977 (47%), Gaps = 108/977 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLLS K  G+  NAI GF  +L K+L+  +      HF V 
Sbjct: 2   DKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAIYGFAMLLEKILKEEQPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YK  R   P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHEKYSEYKGGRQSTPPELSEQFPYIRQLLDAYHIKYYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           +  AE  G    II+ D+DL QL +    +Y T             K G+       +  
Sbjct: 117 SKQAEASGLETIIITGDRDLTQLATDHVTIYYT-------------KKGVT-----DVDH 158

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            T + I       G+  K    +    G+  + +   + + +K   + + +       S 
Sbjct: 159 YTPEFIAEKYN--GLLPKQIIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQ-----FHSV 211

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           + V    D             + +G +L   L+  +    +++   T +CD+       +
Sbjct: 212 EGVYNHLD-------------EVSGKKLKENLENSKADAFMSKDLATINCDSP------I 252

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            +N  +     +    D+    +  +F  L +      SE   +            +  +
Sbjct: 253 KVNLKDTIMGDLNDNKDKIELFQKLEFKQLLNDIDSSASENNSET----EHNFEVIHHFD 308

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           N ++ K+ N                A      D  +    K +   +   +Q    S + 
Sbjct: 309 NINFKKLDN----------------AIIHFEIDGSNYLKDKILKFGLYAQNQYIVISAED 352

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +                        L ++ EN+H  KI  + K   +  HR  I+++
Sbjct: 353 IHQYT----------------------ELIEWLENDHNNKIVFDAKKTYVAAHRLEINLQ 390

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQ 539
             + D+ML SY++D  R+  D+ S+   +     K       K +K  +P+D +    ++
Sbjct: 391 HIDFDVMLASYIIDPSRTIEDVQSVVSYYNQNFVKSDIAVYGKGKKRQVPLDDV----LE 446

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H       I     L+   L     + +   L+ P+  +++ ME TGI  D + LK++ 
Sbjct: 447 VHIAAIMQAIYNCKPLMSDILSDHNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQ 506

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + L +L   IY+ +GE FN++SPKQLG +LF  LK P   KTKTG   +TA D+ +
Sbjct: 507 NELQEKLDNLVSEIYEAAGESFNINSPKQLGIVLFETLKLPIIKKTKTGY--STAVDVLE 564

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G +PII  ILE+RQLSK++STY + L   I+   QR+HT ++     TGRL+S++PN
Sbjct: 565 QLQGKHPIIDYILEYRQLSKLQSTYVEGLQKVISDD-QRIHTRFNQTLAQTGRLSSIDPN 623

Query: 720 LQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAH+ +   L + F +  DIH
Sbjct: 624 LQNIPIRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDDIH 683

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R +A  +I  Y   
Sbjct: 684 AATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYGISDYGLSQNLGITRKKAKAFIDDYLAS 743

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPG+ +Y+       + NGYVET+  RR +  +I S   ++R+  ER A+N PIQGSAAD
Sbjct: 744 FPGVKQYMTDIVKDAKANGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAAD 803

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+   K++ +     K+LLQ+HDEL+FEVP+ E+   S+ +   M+ A    + L
Sbjct: 804 IIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVPKSEVQDFSEFVEEIMDNA----LTL 859

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPL V+      W + 
Sbjct: 860 AVPLLVDSSYGATWYDA 876


>gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
 gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
          Length = 916

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/985 (29%), Positives = 484/985 (49%), Gaps = 85/985 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA++A      K++  P  A+ GF N L  +++    +    + A  
Sbjct: 2   KRAVLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIIKEFNPD----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    +  R EIY DYK+NR   PE L+ Q+P +     AF I    I+ +EADD++ +
Sbjct: 56  FDVKRSSLKRTEIYSDYKSNRQSTPEDLVAQIPRIEEVLDAFNINRYRIESYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWGIPP 176
                 K+   V I++ DKDL QLV     +    K  +          E V+   G+ P
Sbjct: 116 IAKKIAKDDLEVIIVTGDKDLSQLVEKNITIALLGKGTEGEKFGMLRTAEDVVNYLGVVP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRE 231
           EK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +
Sbjct: 176 EKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSKYDSLEKIYENIDDLKNIEGIGPSLIK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N+    + A LSR+L  + T++ I I  E+L     +  +L    K LEF   I ++   
Sbjct: 236 NLTNEKDIAFLSRELAKIFTNLDIDIEEENLKYS-MDKEKLYELCKILEFKMFIKKLNLE 294

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                +N +   + ++  +      +TE      +   + +                   
Sbjct: 295 EKTQTSNSDHKPVLLSLFDKVEEVEKTEKVEKEIVYEKELN------------------- 335

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                       +N     I N   + +  + L      +         + + + + I +
Sbjct: 336 ---------INFSNRELVIIDNETLLNEQKEYLNNYKKIA---------SIYYEELGIIL 377

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           ST +   D  F +                 KN     ++ ++ +         I +N K 
Sbjct: 378 STEE--KDLYFPLNHGG----------LLSKNIDKNTLIKFISEL----DVKFISYNFKT 421

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
               L   G + +     M+++Y L S ++  D+     ++ +   K+  K+      I+
Sbjct: 422 ----LLNLGFTFKSMYMDMMIAYHLISSQTKMDVIIPITEYSNVDAKDF-KTTFGKAHIE 476

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +   +   +  +    IL ++  +   L  E+L  +  + + P+I V+S ME  GI+ID
Sbjct: 477 TLLVGEFAGYLSKIGLGILAIYDEINHILHKEELYDILIQNEMPLIPVLSLMERKGIKID 536

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K  S+E+ K L  +E++IY+ +GE+FN++SPKQLGDILF K+  PSG KTKTG + 
Sbjct: 537 VSYFKNYSSELEKELAKIEKSIYEEAGEEFNINSPKQLGDILFVKMNLPSGKKTKTG-YS 595

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LE +      I + +L++R+L+K+K+TY D+LPN ++    R+HT ++   T TG
Sbjct: 596 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPNLVD-SNSRIHTSFNQIGTATG 654

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K   L + +
Sbjct: 655 RLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAY 714

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               D+H + A  IF + + + V+ + R  AK INFSIIYG + F LA +L+IP  +A++
Sbjct: 715 REEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVKDASE 774

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIK+YF ++P +  + ++   F  ++GYV+T+FGR+ +   I+S   +I+   ER A+N 
Sbjct: 775 YIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERMAVNT 834

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQG+AA++ ++ M+ V+++L+D      +LLQ+HDEL+FEV E  +   S+I+   M+ 
Sbjct: 835 VIQGTAAEVLKKVMLKVYETLKDKD-DIALLLQVHDELIFEVEESSVEKYSEILADIMKN 893

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
               +    V L +NI +  NW E 
Sbjct: 894 TVKLE---DVNLNININIGKNWAEA 915


>gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 894

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/981 (28%), Positives = 487/981 (49%), Gaps = 100/981 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG S + RAFY  P L+   +G+  NA+ GF N+L+K L   + +    +  V F
Sbjct: 4   KLILIDGHSILNRAFYGVPDLTNA-EGIHTNAMYGFLNILFKFLDEEKPD----YITVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++++  YK  R  +   L  Q+PL++   +A  I  +E +G+EADDI+ T  
Sbjct: 59  DLSAPTFRHKVFDGYKGTRKPMQPELKQQVPLMKELLKAMNITVVEQEGYEADDILGTIA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +  +G  V+I+S D+DL+QL      +     ++ +    V   +             
Sbjct: 119 KESAAKGIDVSIVSGDRDLLQLADEHIKIRIPKTKKGVT--EVEDYY------------- 163

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
               + N+ G+    +     L+   G+  + +  A  +  K     I +Y         
Sbjct: 164 -PSDVFNLYGVTPHEFIDVKALM---GDTSDNIPGAPGVGPKTASAIIQKYHS------- 212

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
                    +    EHL        +                ++ T + +   +   + +
Sbjct: 213 ---------LDNVFEHLCELKPPKAK----------------ISITENVEQIKMSRFLSE 247

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
           I            ++  D  ++ S+     ++ S    ++   K  L++ +       + 
Sbjct: 248 IKI----------DVPIDYKVEDSKAGDFFNENSYELFKKYNFKNMLKKFENTDIIAKDP 297

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD-AFHSKPIAIAISTLDQKDDTSFKV 424
           + Y       D              +  I    +     ++ IA+ I+  D +       
Sbjct: 298 ECYEYFKKISDFADVENVFNKAVDIAGGIEKIGLSIVRENELIAVGITLSDTE------- 350

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---YGI 481
              +I +S   ++          + LS +     N +      NIK    +  +    G 
Sbjct: 351 -IYYIPVSGFVTESYLA------DRLSDVVSVASNRNIA--SANIKDYLDIFEKDKINGY 401

Query: 482 SM---RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535
            +   + F D  + +Y+L     S+D  S+ +++LS T     E+L     +  +++  D
Sbjct: 402 PLVSEKAFIDTAIAAYLLHPSNESYDYESLGREFLSLTYPSKTELLGKLSINKAVNEAED 461

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + + ++A  +S    +    +  +L  E +  ++E ++ P+I V+ +M+  GI +D+  L
Sbjct: 462 N-LIKYACLSSYAYYKCADKITEQLKSENMYELFETIEMPLIFVLFEMQQQGISVDKQAL 520

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              S  +   +  LE+ IY+ +GE+FN++SPKQLG ILF +L  P+G KTK+G   +TA 
Sbjct: 521 VDYSKVLGTKISVLEKEIYEAAGEEFNINSPKQLGVILFERLGMPNGKKTKSGY--STAA 578

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +    D P++  ILE+RQL+K+KSTYAD L  +I++   R+H  ++   T TGR++S
Sbjct: 579 DVLEKLAPDYPVVSKILEYRQLAKLKSTYADGLTQYISEDG-RIHGTFNQTITATGRISS 637

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNIPI+ ++G+ IR+ F+       + ADYSQIELRILAH++    L + + +S 
Sbjct: 638 TEPNLQNIPIRMEMGKAIRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSA 697

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AA++FGV +E+V+ + RR+AK +NF IIYG+S F L+  L I R EA +YI+RY
Sbjct: 698 DIHRATAAQVFGVPLEEVTDEQRRNAKAVNFGIIYGMSSFGLSQDLSISRKEAKEYIERY 757

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I  +I+   +  ++ GY  T++ RR    EI S     R+  ER A+NAPIQG+
Sbjct: 758 FASYPTIKTFIDGLVSDAKEKGYSLTMYNRRREIPEIKSSNFMQRSFGERVAMNAPIQGT 817

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI+V+ +L++H L ++++LQ+HDEL+ E  E+E+ T  QI++  M+ A    
Sbjct: 818 AADIIKLAMINVYNALKEHNLRSRLILQVHDELLVETAEDEVDTVKQIMLDGMKNA---- 873

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
           ++L+VPL+V++K   +W E +
Sbjct: 874 VSLKVPLEVDLKEGKDWLEAH 894


>gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
 gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
          Length = 870

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/980 (32%), Positives = 473/980 (48%), Gaps = 126/980 (12%)

Query: 10  VDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        SH  V FD
Sbjct: 2   IDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHILVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T   
Sbjct: 58  AGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGTLDK 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P + + L
Sbjct: 118 LAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQFIDL 177

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GD  DNIPG+  +G KT   L         +L + S        E I E  +  + 
Sbjct: 178 KALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYENIDGMKT 221

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+                  + E+    +  +FL         ++   T D  A    P+
Sbjct: 222 SK------------------MKENLINDKEQAFL---------SKTLATIDTKA----PI 250

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            + +      G  +E        +   Q      Q   ++S    + L    + ++SQ  
Sbjct: 251 AIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAEGLDFTIVDQISQDM 306

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++ +S                        F       +      +  A S  D+      
Sbjct: 307 LSEES-----------------------IFHFELFGENYHTDNLVGFAWSCGDK------ 337

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                           +T K  L ++     K F E        ++ K  K++L R+G+ 
Sbjct: 338 --------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVLLQRFGVD 379

Query: 483 MR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQ 537
           ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP       +
Sbjct: 380 LQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP----EREK 434

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             EH      V+++   +L  KL     L +   +++P+  V+++MEI GI + ++ L +
Sbjct: 435 FLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLE 494

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT    +TA D+
Sbjct: 495 MQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDV 554

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T TGRL+S++
Sbjct: 555 LERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQTGRLSSVD 613

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L + F+   D
Sbjct: 614 PNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGAD 673

Query: 777 IHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           IH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA  YI  Y
Sbjct: 674 IHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIDTY 733

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AIN+PIQGS
Sbjct: 734 FERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAINSPIQGS 793

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +ME+A    
Sbjct: 794 AADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEA---- 849

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           I L VPL  +      W E 
Sbjct: 850 IQLSVPLIADENEGATWYEA 869


>gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
 gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
          Length = 904

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/978 (29%), Positives = 466/978 (47%), Gaps = 87/978 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             + L+L+DGS+F YR F+A P L R  DG+P NA+      L K+++  + +    +  
Sbjct: 10  DGDPLYLIDGSAFFYRGFHAYPDLKR-SDGVPTNAMFFVLRTLLKVIKEEKPK----YLV 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            I D     FR+E+Y  YKA RP +P+ L  Q+  ++ A    G+P I  +G EADD IA
Sbjct: 65  FILDGKGKNFRHELYDQYKAQRPPMPDDLRSQIEPLKEALNVIGVPLIVSEGEEADDCIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKID-IEHVIKKWGIPPEKMV 180
           +     + E   V I+  DKDL Q +     ++D   K+EKI  +    +   + PE+  
Sbjct: 125 SLAARYKSE-RPVVILGADKDLKQCLDENVFMWDPAGKKEKITSLADFREDTKLEPEQWA 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GDS DNIPG+PG+G  TA  ++ EY  LE+I  N  ++K    ++ + +  E  
Sbjct: 184 DFQALVGDSADNIPGVPGVGKVTATKIMAEYPTLEDIRDNYDKLKPA-IQKKMKDELENI 242

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            + R+L  +R        L+   L   +G R   F+   EF  L+  V + +   + +  
Sbjct: 243 FVYRELTRMRLGSCSDCDLKQCELRSVDGDRAAEFMTTYEFRSLVRDVKSLFSATSGSGV 302

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           P      +   +      E    T+    + S+       +  E TP     E       
Sbjct: 303 PAGNSKKSASGQASLFGEE--DTTSAAKPKKSASGGGQFSLFGEATPAPAAPENRL---- 356

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                                 +L+ I SAS       +  F  K + +       ++  
Sbjct: 357 ----------------------ELKKISSASE------LPDFTDKEVGLV------REGN 382

Query: 421 SFKVETIFIDL--SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            F +     +L   V  ++ + G  +    +++ +K F   +     G            
Sbjct: 383 IFFIGVDGDELMCKVTAAELAAGLQSAKTIVVADVKSFLRADDA--WGQ----------- 429

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
             I +  + D+ L +Y+L+    ++    +               R      +++ D+  
Sbjct: 430 --IQLFRWFDLSLAAYLLNPEERNYAWDRL---------------RAMLFAGEELPDAVD 472

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           + H        L L  +L P++    L  +   L+ P+I V++ ME  GI ID D     
Sbjct: 473 EVHPDAQGMAALALMHVLGPRIKSAGLDELTANLEIPLIPVLADMEKAGITIDLDAFADF 532

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E+++ +  L   I++ +GE FN+ S +Q+  +LF  L    G KT  G   T    LE
Sbjct: 533 LTEVNERINELTRVIHERAGEPFNIRSSQQMATVLFDSLGLKPGGKTPKGALSTANSVLE 592

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +++ G + II +ILE+R++ K++STY + LP  +N    R+HT ++  +T TGRL+S  P
Sbjct: 593 KLS-GQHEIITDILEYRKMEKLRSTYLEPLPKLVNA-NGRIHTNFNQLATATGRLSSSGP 650

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+ D G+++R  F +    +L +ADYSQ+ELR+LAH +    L   FE+  DIH
Sbjct: 651 NLQNIPIRGDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSAFEHDEDIH 710

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AA +F  +   V+   RR+AKTINF +IYG+ P +L+ +L I  +EA ++I +YF +
Sbjct: 711 SRTAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQKLSRELGIKINEAKEFIAKYFEK 770

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
              + E+ +      R+ GYV T+ GRR    E++S    I +   R AIN  IQGSAAD
Sbjct: 771 LDVLKEFYDSVVEQGREKGYVTTLSGRRRLLPELHSTSPQILSQARRQAINTVIQGSAAD 830

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI V  + E   L  +++LQIHDEL+ E PEE I    +++   M+        L
Sbjct: 831 IIKMAMIKVADNAEIKHLGGRLILQIHDELLVEGPEENIEEIGKLLQKDMQTVA----TL 886

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPLKV++ +  NW + +
Sbjct: 887 AVPLKVDLGLGRNWAQAH 904


>gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec]
 gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec]
          Length = 911

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/982 (26%), Positives = 441/982 (44%), Gaps = 100/982 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L L+DG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H
Sbjct: 22  ADRPRLLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEK----PTH 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV +D P  TFR+  Y +YKA R + P   + Q+ L+     A  +P +   G+EADD+
Sbjct: 78  VAVAWDLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCDALAVPGVSAAGYEADDV 137

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    A  EG  V +++ D+D +QLV+    +  T K      +   + V  K+G+ P
Sbjct: 138 IATLATQASAEGMDVLVVTGDRDALQLVNERVTVLMTRKGISDMTRFTPDEVQAKYGLSP 197

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL                          G+  + L +   + +K   + I ++
Sbjct: 198 AQYPDFAALR-------------------------GDPSDNLPSVPGVGEKTATKWIQQF 232

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A    +LV    ++               G  L   L  +   + +  +A     + 
Sbjct: 233 GSLA----ELVDRADEI-----------GGKTGASLREHLSNVIRNRSLTELAREVPLE- 276

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             + P  L ++  + + +    +  +   ++   +++LS      +              
Sbjct: 277 --LTPADLRLHPWDREAVHQLFDTLQFRVLRERLYAALSVAPPAAD-------------- 320

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                    + +   ++     +    L    S + +        +           +  
Sbjct: 321 ---------EGFEIELSMLGPDELASWLAEHASGAGRTGLHLRGTW-----GRGTGVIVS 366

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +      +ID +  T+ DS             L  +  +    K GH++K   L L
Sbjct: 367 VALAAADGAAAWIDPTQLTAGDSV-----------ALGDWLADPDRAKAGHDLKGPMLAL 415

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G ++ G   D  L +Y+   G+ S D+A +A ++L    K    S    + +D   +
Sbjct: 416 AEAGFTLAGVTSDTALAAYLALPGQRSFDLADLALRYLHRELKSDAPSN-GQLTLDGSGE 474

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +   E     +   L+L   L   L       +   ++ P++ +++ ME  GI  D+D L
Sbjct: 475 ADEAEADAIRARAALELADALDGDLERRSAARLLREMELPLVTILATMERAGIAADEDHL 534

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++       +  +    + + G  FNL SPKQL  ILF +L  P   + KTG       
Sbjct: 535 LELQKHYGGEVSDVAAQAHGIVGRTFNLGSPKQLQQILFDELALPKTKRIKTGYTTDADA 594

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   D+P+I  +L  R ++++K T  DSL   I+    R+HT ++     TGRL+S
Sbjct: 595 LAWLATQSDHPLIPVLLHHRDVARLK-TVVDSLIPMID-DAGRIHTTFNQMIAATGRLSS 652

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIPI+T  G++IR+AF+       L++ADYSQIE+R++AH++    L + F + 
Sbjct: 653 TDPNLQNIPIRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASG 712

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VAA+ FG+ + +V P++RR  K +++ + YG+S F LA QL I   EA + +  
Sbjct: 713 EDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREQMDA 772

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +++    +  R++GY ETI GRR +  ++ S  +  R + ER A+NAPIQG
Sbjct: 773 YFARFGGVRDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQG 832

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+ V ++L    L++++LLQ+HDELV E+   E      ++   M  A   
Sbjct: 833 SAADIIKIAMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEALVRAEMGSA--- 889

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              + VPL+V++     W E  
Sbjct: 890 -YEMSVPLEVSVGAGRTWDEAG 910


>gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 878

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/977 (30%), Positives = 473/977 (48%), Gaps = 107/977 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NAI GF  +L K+++  +     +HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAILGFAKLLEKIIREEQ----PTHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKHYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           +  A++  F   I++ D+DL QL +    +Y T K    D++H   ++            
Sbjct: 117 SKEADQNDFETIIVTGDRDLTQLATQNVTIYYTKKG-VTDVDHYTPEF------------ 163

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
                 +   G+  I       L+   G+  + +   + + +K     +L   ++     
Sbjct: 164 ----IAEKYNGLKPIQIIDMKGLM---GDSSDNIPGVAGVGEKTAI-KLLNQFDSVEGVY 215

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +                  ++  +G +L   L+      L+++   T +       P+ +
Sbjct: 216 E-----------------NIDKVSGKKLKEKLELSHEDALMSKELATIN----RYSPIEV 254

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            +N T+   I    E  +    K  +F  L        SE      F +  +++S   + 
Sbjct: 255 TLNDTKLSDINDNHE--KIELFKKLEFKQLLADIDNKASE------FEQEQKQVSFDILP 306

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y                  +  A      D  +      +       ++        
Sbjct: 307 TFEYV-------------DFNHLDEAVIHFEIDGSNYLKDDILKFGFYDKER-------- 345

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +I +     +D              L K+ ENE+  K+ ++ K   ++ HR  I+++
Sbjct: 346 ---YIVVDADNIKDYP-----------ELIKWLENENSKKVVYDAKKTFVIAHRLNINIQ 391

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQ 539
               D ML SY+ D  R+  D+ S+   +     KE      K +K  +P  +I    + 
Sbjct: 392 NIVFDAMLASYIFDPSRTIDDVYSVVTNYHQTYVKEDVSIYGKGKKRHVPDTEI----LN 447

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  I  +  L+  +L   + +++ + L+ P+  ++S+ME  GI  D + L+ + 
Sbjct: 448 THIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDVNDLQHMQ 507

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E+ + L  L + I+D +GE+FN++SPKQLG +LF  LK P   KTKTG   +TA D+ +
Sbjct: 508 QELQEKLELLVQRIHDAAGEEFNINSPKQLGVVLFETLKLPVIKKTKTGY--STAVDVLE 565

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++PII +ILE+RQL+K++STY + L   I+   +R+HT ++     TGRL+S++PN
Sbjct: 566 QLQNEHPIINDILEYRQLAKLQSTYVEGLQKVISND-KRIHTRFNQTLAQTGRLSSVDPN 624

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   L + F +  DIH
Sbjct: 625 LQNIPIRLEEGRKIRKAFKPSSEDSVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIH 684

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A ++FGV  E+V+  MRR AK +NF I+YGIS + L+  L I R EA  +I  Y   
Sbjct: 685 TATARKVFGVEAEEVTDLMRRQAKAVNFGIVYGISDYGLSQSLNITRKEAKIFIDDYLAS 744

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FPG+ +Y+       + NGYVET+  RR +  +I S   ++R   ER A+N PIQGSAAD
Sbjct: 745 FPGVKQYMSDIVKDAKANGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAAD 804

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+   K ++      K+LLQ+HDEL+FEVP+ E+   S  +   ME A    ++L
Sbjct: 805 IIKLAMVEFDKQVQHTSYKAKLLLQVHDELIFEVPKSEVEEFSLFVEDIMEHA----LDL 860

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPLKV+      W + 
Sbjct: 861 DVPLKVDSNYGPTWYDA 877


>gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000]
          Length = 882

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/989 (30%), Positives = 467/989 (47%), Gaps = 122/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L LVDG+S  +RAF+A        +  +GL  NAI  F NM   ++Q      +
Sbjct: 1   MTKK-KLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKE----M 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ 
Sbjct: 116 DDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYD 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                      LT   I ++ G+               G+  + +   ++I +K   + +
Sbjct: 176 ----------GLTPKQIIDMKGLA--------------GDTSDNIPGVTKIGEKTAIKLL 211

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            +Y                          + E+ +  +     + L   K    ++    
Sbjct: 212 KQYGSV---------------------EGVYENIDEMKKSKMKENLINDKEQAFLSKRLA 250

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
               N  PV +++     +G  +E  +     +   QF       +K++  + P      
Sbjct: 251 TIEVN-APVEVNVEDLAYEGKNLEKLVPFYKEMDFKQF------LAKLDITEEP------ 297

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    + +  +  + +    + +   +      +  +     +   S  +   ++ 
Sbjct: 298 -------VEMEDILFEVVEDQLTNEMFTDDM------ALYVEMMEDNYHTSPIVG--LAW 342

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + K   +     +F                           +  +E   K  ++ K   
Sbjct: 343 GNNKKMYTTNNLAVFES--------------------QPFIDWLMDETRKKNVYDAKRTY 382

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        K  K  +
Sbjct: 383 VALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGL 442

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D+        H       I  L   L  +L  +    ++ +++ P+  ++  MEITGI
Sbjct: 443 PEDE---EVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILGDMEITGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P   KTKTG
Sbjct: 500 RVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +      PI+ +IL +RQ++KI+STY + L   I    + +HT Y    T
Sbjct: 560 Y--STAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNK-IHTRYVQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+    L
Sbjct: 617 QTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHL 676

Query: 768 YQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+  L I R 
Sbjct: 677 KEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 736

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++R+  ER 
Sbjct: 737 QAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERT 796

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+   +Q++  
Sbjct: 797 AINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQLNQLVKE 856

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            ME A    ++L VPL  +      W E 
Sbjct: 857 VMEHA----VSLHVPLITDSSWGKTWYEA 881


>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 921

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/986 (28%), Positives = 464/986 (47%), Gaps = 75/986 (7%)

Query: 1   MQKENHL-------FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR 53
           M  +  L       FL+DGS+FIYR F+A   + R  DG P NA+     +L ++L+  R
Sbjct: 1   MSLKKRLDLATEPVFLMDGSAFIYRGFFANRNMQR-SDGFPTNALVVVTRVLLRILREER 59

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
            +    +F  + D     FR++I+P YKANR   PE L+ Q+  +     A G+      
Sbjct: 60  PQ----YFLFVKDGKGKNFRHDIFPLYKANRDATPEDLVRQMQPIERMVTALGMNLEVSD 115

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT--VKEEKIDIEHVIKK 171
             EADD IA+      +E   V I+  DKDL Q + P   ++D     E+ +      ++
Sbjct: 116 HCEADDCIASLAARFSQE-RPVVIVGGDKDLKQCLGPNVYMWDPAFRDEKLLTAAQFTEE 174

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P +   +QAL GD+ DNIPG+PGIG KTAA + +   +LE+I  + + +   K ++
Sbjct: 175 SGLTPAQWPDVQALVGDTSDNIPGVPGIGPKTAAKIFEICPSLEDIRDHFA-LLPPKIQD 233

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + ++ +     RKL  L  DV   + ++ L++   N  R     +  E   L   +A+ 
Sbjct: 234 KLRDHLDEMFTWRKLTTLSLDVCTAVEMDDLLVRPINAARCADLAEEFELHALRREMASL 293

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                +              +G ++            ++ +              P+   
Sbjct: 294 ERMQLSAPADSERAGKDERFRGESLPLLSASAEAGSDAKKTGGGPARGAAAQPLPPKGAG 353

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            +               +++ +  D +   + +  + +  F           +      +
Sbjct: 354 AQMSLLEVVEEKPAPQVSRVEDLPDCRG--RNVALVWARGFDAA-----PHAAVEGGEDV 406

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF-LKIGHNIK 470
                ++  S              +  +  +  +T +    LK           +    K
Sbjct: 407 CWTGGQESMSLLC-----------AWAAEARRIVTPD----LKGLLSQAACWRSLTQEKK 451

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
            D             F D+ L +Y+++   S +    +A  W +  R +           
Sbjct: 452 QDF------------FMDLGLAAYLVNPEESDYAWPRLAVHWGAPLRDDGPGP------- 492

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
                          + + L++  +L  ++  + L  +YE L+ P+  +++ ME  GI I
Sbjct: 493 ---------------ALLALRMVEVLEARMRQDGLAELYESLELPLTPILADMERRGIAI 537

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D    +   +++   L +L   +Y+ +G +FN+ S +QLGD+LF+ L+ PS  KTK GQ 
Sbjct: 538 DAAAFESFLSDVQGRLDTLTAAVYEAAGREFNIRSAQQLGDVLFSTLELPSPRKTKGGQA 597

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             T+QD  +   G +P++ ++LE+R+L K++STY D LP  ++    R+HT ++  +T T
Sbjct: 598 S-TSQDTLEKLAGRHPVVDSVLEFRKLEKMRSTYLDPLPRLMDG-NGRIHTTFNQKATAT 655

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIP++ DLG+++R  FI+ P   L+SADYSQ+ELR+LAH+++   L + 
Sbjct: 656 GRLSSSNPNLQNIPVRGDLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEA 715

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N  DIH   AA ++ +  ++VSP  RR+AKTINF +IYG+   +L   L+I  SEA +
Sbjct: 716 FRNGEDIHARTAALVYDLAPDQVSPDQRRNAKTINFGLIYGMGAQKLGQDLKISTSEAKE 775

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF R  G+ E+ +  +   ++ GYV T+ GRR    +I+SP      +  R AIN 
Sbjct: 776 FIARYFSRLTGLKEFYDSVEATAKRQGYVTTLGGRRRLLPDIHSPNGQAYALARRQAINT 835

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQGSAADI + AM++V +  +  +   ++LLQ+HDEL+ EVPE     A   +   M  
Sbjct: 836 VIQGSAADIIKLAMLAVAEDEQLREHEARLLLQVHDELLLEVPEASARAAGARVADLMSS 895

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
                  L VPL V+  V  NW   +
Sbjct: 896 VKPGGEPLSVPLVVDWGVGKNWGAAH 921


>gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 881

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/992 (30%), Positives = 481/992 (48%), Gaps = 129/992 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        R   GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFRNQSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR ++Y DYKA R K P+    Q P +R    A G+P  ++  +EA
Sbjct: 57  PTHILVAFDAGKTTFRTDMYADYKAGRAKTPDEFREQFPYIREMLTALGVPFYDLANYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDANTIVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+                          +I +K   +
Sbjct: 177 MGLTPEQFIDLKALMGDKSDNIPGVT-------------------------KIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL-EFTKLINRVAT 290
            + EY                                   L      L  F     +   
Sbjct: 212 LLHEYG---------------------------------SLEGIYANLDHFKASKMKENL 238

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
             D + A +   +  INT     I +E  + +   +         D  +    E    +L
Sbjct: 239 MNDKEQAFLSKTLATINTDAPITIGLEDLLYQGPNL---------DALATFYDEMGFVQL 289

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
                 +L    +    Y ++++    + +           F+I+ D    +H + I  A
Sbjct: 290 RAALKTQLPSSSVAEVQYQEVIDNVTGEMFADD----SFFYFEILKDN---YHREAIT-A 341

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
            +  +Q+             + V  + D   +   TK +L   K            ++ K
Sbjct: 342 FAWGNQET------------IYVSQNPDLLRQPLFTK-VLE--KPIL--------TYDFK 378

Query: 471 YDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRK 525
             K++L   G+ +     D  L +Y+L S    +++A+IA+      L        K  K
Sbjct: 379 RTKVLLSHLGVEISEAAFDARLANYLL-SNVDDNELATIARLHTSISLESDEAVYGKGVK 437

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            + P   +    +  H      V+     ++  KL       +Y +++ P+ +V+++MEI
Sbjct: 438 RAFPAKDL----LFAHLARKVAVLATSKPVMLEKLAENGQSDLYYKIELPLANVLAKMEI 493

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI++++  L +++ +    + +L + IYDL+GE+FN++SPKQLG ILF K++ P     
Sbjct: 494 AGIKVNKLTLMEMAEQNRNIIDALTQEIYDLAGEEFNINSPKQLGSILFEKMQLPLTMTK 553

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KT    +TA D+ +      PI+  IL++RQ++K++STY   L ++I +  + +HT Y  
Sbjct: 554 KTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYLIGLQDYIMEDGK-IHTRYVQ 612

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S +PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+  
Sbjct: 613 DLTQTGRLSSTDPNLQNIPIRMEQGRLIRKAFTPSSDDWLLLSSDYSQIELRVLAHISGD 672

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             L   F ++ DIH   A  +FG+  E  V+   RR+AK +NF I+YGIS F L+  L I
Sbjct: 673 EHLIAAFNDNADIHTATAMRVFGIEKEADVTANDRRNAKAVNFGIVYGISDFGLSNNLGI 732

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R +A DYI  YF R+PGI +Y++      +  GYVET+F RR    +INS   ++R+  
Sbjct: 733 SRQKARDYIDTYFERYPGIKKYMDAVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFA 792

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN+PIQGSAADI + AMI++ K+L D +   KMLLQ+HDE+V EVP++E+    Q+
Sbjct: 793 ERTAINSPIQGSAADILKIAMINLDKALVDGEFKAKMLLQVHDEIVLEVPKQELAAVRQL 852

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +   ME A    ++L VPL+ +     +W E 
Sbjct: 853 VKEIMEDA----VDLAVPLRADENSGQSWYEA 880


>gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
          Length = 879

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/974 (28%), Positives = 461/974 (47%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++
Sbjct: 57  LDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSREGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    
Sbjct: 117 VRTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPHQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS
Sbjct: 177 ALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S  + LE   LI +       D   +  ++
Sbjct: 237 KKLA--------------------------SLYENLEVQDLIEK---ATYPDEEPLLKIL 267

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E   +  +   + D   K   F +                              
Sbjct: 268 EILEHYELNTLLKKLRQNPDNKDKNLGFKA------------------------------ 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T I +   + + +  L+     +F   T  +D   +K +  +    + +      
Sbjct: 298 -----TLIQDENKLFEILNTLDKESIIAFDTETTGLDTKEAKIVGFSFCMSENE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
               ++ L+ +      G+    +     ++  F   +   IGHN+KYD  ++   +G++
Sbjct: 347 --AFYVPLTHNYL--GVGEQISLQSAKKAIELIF---NHFVIGHNLKYDFKIIQNNFGLN 399

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + + + D M+++++ +      ++  +A +  +Y         K       +   +  ++
Sbjct: 400 LPQKYADTMILAWLKNPS-LRVNMDDLALRLFNYETLHFESLVKKGENFASVELEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L    LL + +  +   I ++  ME  GI++D + L+ +  +
Sbjct: 459 AAEDAYITLRFYLYFLKNLEAP-LLELAKNCEFDFIRIIMMMEENGIKLDTNALEALMKK 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               + +L E IY L  ++FNL+SPKQ+GDILF KLK PSG K KTG   +T + +    
Sbjct: 518 FENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGY--STDEKVLNAL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +PII  IL++R+L+K+ STY + L    +  +  R+++ +    T TGRL+S +PNL
Sbjct: 576 LDKHPIIPKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  F++      IS DYSQIELR+LAH ++   L   F N  DIH  
Sbjct: 636 QNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHAR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + + + R  AK+INF +IYG+    L+  L+I    A  YI++YF  F 
Sbjct: 696 TAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +Y E  KN  +QNG++ T+  R+ ++D  N+ K     + ER +IN+ +QGSAAD+ 
Sbjct: 752 SIKKYFETVKNEAKQNGFITTLNSRKRYFDFENA-KPMQIAMYERESINSILQGSAADVI 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ + K L + K   K++LQIHDEL+FEV ++      +     ME      + L+V
Sbjct: 811 KLAMLEIDKELNEDK---KLILQIHDELIFEVKDDLCENFVKKTRDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQE 974
            LK +  ++ NW +
Sbjct: 864 KLKTSSSIAKNWGD 877


>gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 914

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/978 (27%), Positives = 442/978 (45%), Gaps = 99/978 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++ +     +HFA
Sbjct: 24  RPRLMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASMLANTLRDEQ----PTHFA 79

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    T+R E + +YKANR K P+    Q+ L+             ++GFEADDIIA
Sbjct: 80  VAFDVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIA 139

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE  GF V I++ D+D  QLVS  T +    K      +   E V +++G+ P +
Sbjct: 140 TLATQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQ 199

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G                          K   + I ++  
Sbjct: 200 YPDFAALRGDPSDNLPGIPGVGE-------------------------KTAAKWITQFGS 234

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A    +LV                 E+  G    +F   LE  KL  R+         +
Sbjct: 235 FA----ELVE--------------RAEEVKGKAGQNFRDHLEAVKLNRRLTEMVRDVPLD 276

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P  L+    + K +A+  +          +     D  ++   E   + + L+     
Sbjct: 277 KAPEDLERAAYDRKQLAVLLDTLEIRNPSLRERLLAVDPGAEQEQEPVTEDVALDATLVP 336

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   +                    LE  G+A   + T       +  +A          
Sbjct: 337 ANGKLAP-----------------WLEEHGNAVLGVATVDTWKLGAGEVAEVALAAAGGA 379

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
              F+                    +L ++       +  +    K+ H+ K    V   
Sbjct: 380 AAWFEPS------------------SLDEDDERAFADWLGDPERPKVMHDAKGLMRVFGE 421

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           +G+++ G   D  L +Y++  GR +  + +++ ++L    +E++ +++S   +   +D +
Sbjct: 422 HGMTVAGVAMDTALSAYLVKPGRRTFALDALSLEYLG---RELVPAQESDGQLAFGADDE 478

Query: 538 VQEH-AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            Q    +  +  IL L   L  +L       +   ++ P   ++++ME  GI  D+  L+
Sbjct: 479 TQARTLMVEARTILDLGTALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADRAHLE 538

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++  + +  +       +   G +FNL SPKQL ++LF +L  P   KTKTG        
Sbjct: 539 EMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSL 598

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  ++ +   +L  R+ +K++ST  + L   I     R+HT ++     TGRL+S 
Sbjct: 599 AWLAGQTEHELPVLMLRHREQAKLRST-VEGLIKSIAPDG-RIHTTFNQTVAATGRLSST 656

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L   F +  
Sbjct: 657 DPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGE 716

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR VA  +F V    V  +MRR  K +++ + YG+S F L+ QL I   EA   +  Y
Sbjct: 717 DLHRTVAGYVFNVEPAAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAGEARALMDTY 776

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+ +     R  GY  T+ GRR +  ++NS     R   ER A+NAPIQG+
Sbjct: 777 FERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGT 836

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+   E     +I+   M  A    
Sbjct: 837 AADIVKIAMLGVDRALREAELTSRMLLQVHDEIVLELAPGEREPVEEILRREMAAAA--- 893

Query: 956 INLRVPLKVNIKVSNNWQ 973
             LR PL V++ V  +W+
Sbjct: 894 -QLRAPLTVSVGVGRDWE 910


>gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455]
 gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455]
          Length = 870

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/980 (32%), Positives = 471/980 (48%), Gaps = 126/980 (12%)

Query: 10  VDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        SH  V FD
Sbjct: 2   IDGSSVAFRAFFALYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSHILVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADDII T   
Sbjct: 58  AGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDIIGTLDK 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P + + L
Sbjct: 118 LAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTPAQFIDL 177

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GD  DNIPG+  +G KT   L         +L + S        E I E  +  + 
Sbjct: 178 KALMGDKSDNIPGVTKVGEKTGIKL---------LLEHGS-------LEGIYENIDGMKT 221

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+                  + E+    +  +FL         ++   T D  A    P+
Sbjct: 222 SK------------------MKENLINDKEQAFL---------SKTLATIDTKA----PI 250

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            + +      G  +E        +   Q                     L++   +S   
Sbjct: 251 AIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------LKQALNVSSAD 289

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++      IV+        ++      + F       +      +  A S  D+      
Sbjct: 290 VSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWSCGDK------ 337

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                           +T K  L ++     K F E        ++ K  K++L R+G+ 
Sbjct: 338 --------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVLLQRFGVD 379

Query: 483 MR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQ 537
           ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP       +
Sbjct: 380 LQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP----EREK 434

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             EH      V+++   +L  KL     L +   +++P+  V+++MEI GI + ++ L +
Sbjct: 435 FLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLE 494

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT    +TA D+
Sbjct: 495 MQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDV 554

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T TGRL+S++
Sbjct: 555 LERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQTGRLSSVD 613

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L + F+   D
Sbjct: 614 PNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGAD 673

Query: 777 IHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           IH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA  YI  Y
Sbjct: 674 IHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIDTY 733

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AIN+PIQGS
Sbjct: 734 FERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAINSPIQGS 793

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +ME+A    
Sbjct: 794 AADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEA---- 849

Query: 956 INLRVPLKVNIKVSNNWQEE 975
           I L VPL  +      W E 
Sbjct: 850 IQLSVPLIADENEGATWYEA 869


>gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
 gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
          Length = 900

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/981 (28%), Positives = 495/981 (50%), Gaps = 123/981 (12%)

Query: 5   NHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             + LVDG+S ++RAFYAT         G+P NAI GF  M+ K +Q  + ++      V
Sbjct: 32  KKMLLVDGNSMLFRAFYATFMRPMSTSTGIPTNAIYGFAMMINKAVQIIQPDA----MLV 87

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E++ +YK  R + P+ L+ Q P+VR   +A GI   E+   EADDII +
Sbjct: 88  AFDKGKHTFRHELFAEYKGGRKETPDALVEQFPIVREYLEAAGIKQFEMTDIEADDIIGS 147

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                    + + ++S+D+D++QL+  TT ++   K     E++ +E + +K GI P+++
Sbjct: 148 MIKKYPD--WDINVLSSDRDMLQLIDETTSVWLMKKGISDIEEMTVESLKEKMGITPDQI 205

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L+ L GD+ DNIPGIP +G KTA  LL+++G +E                N++   + 
Sbjct: 206 RDLKGLMGDASDNIPGIPKVGEKTALKLLEQFGTVE----------------NLIANTDQ 249

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            +                             +L   ++A +   L+++   T   D   I
Sbjct: 250 LK----------------------------GKLKDNVEAFKDQALLSKRLATIKTDVE-I 280

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                +           +  +  +     S+ S+   + ++  +  +   L +  +++  
Sbjct: 281 PFETEEFTFHITPEPLRQFYVRYEMNSLASKLSTQISEQAEAEAPASQPTLTVAEVRRCP 340

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + +++   +++                            + +    +A++  DQ   
Sbjct: 341 EALLQDNA-ILVLDQDQP----------------------SVYFADVHGLALAYQDQ--- 374

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                  ++I +      ++          L+YL          KI +++K    +    
Sbjct: 375 ------AVYIPIEDVRQDEAL---------LAYLA-----GEKTKIVYDVKACLHLADGA 414

Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKIS 534
           G+++ G + D M+ +++ DS  +S     I +K+         +   K  K  +P  ++ 
Sbjct: 415 GLTINGMKIDAMIAAFLCDSTLTSD--QKIREKFGLTETVTMDEVYGKPGKMKLPEPQLQ 472

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
               ++   +   +I  LW    PKL   +++ ++  ++ P+  V+ +ME  GI+ID   
Sbjct: 473 ----RQLCAQKIQLIDALWKDSEPKLKEMEIVSLFYDVEMPLAAVLYKMEKEGIRIDSQT 528

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  ++ +    L +L + IY  +GE FN++SPKQLG++LF KL  P+     +G+ ++T+
Sbjct: 529 LDDIARQTQARLDALTDAIYAAAGETFNINSPKQLGEVLFDKLGLPA-----SGKKRSTS 583

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +   G +PII ++LE+R+  K+ STYA+ L  +I+    R+HT Y+  +T TGRL+
Sbjct: 584 ADVLEKLLGVHPIIADLLEFRKYQKLYSTYAEGLKKYIHPDG-RIHTIYNQCATQTGRLS 642

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNI ++ +  +++R+AF+      L+++DYSQIELR+LAH+A    L   F ++
Sbjct: 643 STEPNLQNISVRDEESREVRKAFLPSEGNVLVASDYSQIELRMLAHMADEQGLLDAFRHA 702

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A+++F + +++V  + RR AK +NF I+YGIS F L+ QL I R++A ++I+R
Sbjct: 703 VDIHTKTASDVFQIPLDQVDAKHRRQAKAVNFGIVYGISDFGLSQQLDISRAQAKEFIER 762

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   +P I +Y+++  +F +++GY  T+ GRR    EI+      R   +RAA+NAPIQG
Sbjct: 763 YLQSYPNISKYMDQVISFCQEHGYTATMLGRRREVPEIHDKNYMTREFGKRAAMNAPIQG 822

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + AMI + K++ +  L +KM+LQ+HDEL+F+    E+     II   ME A   
Sbjct: 823 SAADLIKLAMIRIDKAISEKGLQSKMILQVHDELIFDALPSELDALCAIIQEGMEHAM-- 880

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L+VPL    K+ + W E 
Sbjct: 881 --ELKVPLVAETKIGDTWYEA 899


>gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG]
 gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG]
 gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137]
 gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62]
 gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF]
          Length = 882

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/989 (30%), Positives = 467/989 (47%), Gaps = 122/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L LVDG+S  +RAF+A        +  +GL  NAI  F NM   ++Q      +
Sbjct: 1   MTKK-KLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKE----M 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ 
Sbjct: 116 DDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYD 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                      LT   I ++ G+               G+  + +   ++I +K   + +
Sbjct: 176 ----------GLTPKQIIDMKGLA--------------GDTSDNIPGVTKIGEKTAIKLL 211

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            +Y                          + E+ +  +     + L   K    ++    
Sbjct: 212 KQYGSV---------------------EGVYENIDEMKKSKMKENLINDKEQAFLSKRLA 250

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
               N  PV +++     +G  +E  +     +   QF       +K++  + P      
Sbjct: 251 TIEVN-APVEVNVEDLAYEGKNLEKLVPFYKEMDFKQF------LAKLDITEEP------ 297

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    + +  +  + +    + +   +      +  +     +   S  +   ++ 
Sbjct: 298 -------VEMEDILFEVVEDQLTNEMFTDDM------ALYVEMMEDNYHTSPIVG--LAW 342

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + K   +     +F                           +  +E   K  ++ K   
Sbjct: 343 GNDKKIYTTNNLAVFES--------------------QPFIDWLMDETRKKNVYDAKRTY 382

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        K  K  +
Sbjct: 383 VALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGL 442

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D+        H       I  L   L  +L  +    ++ +++ P+  ++  MEITGI
Sbjct: 443 PEDE---EVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILGDMEITGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P   KTKTG
Sbjct: 500 RVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +      PI+ +IL +RQ++KI+STY + L   I    + +HT Y    T
Sbjct: 560 Y--STAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNK-IHTRYVQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+    L
Sbjct: 617 QTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHL 676

Query: 768 YQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+  L I R 
Sbjct: 677 KEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 736

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++R+  ER 
Sbjct: 737 QAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERT 796

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+   +Q++  
Sbjct: 797 AINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQLNQLVKE 856

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            ME A    ++L VPL  +      W E 
Sbjct: 857 VMEHA----VSLHVPLITDSSWGKTWYEA 881


>gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 892

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/980 (28%), Positives = 440/980 (44%), Gaps = 101/980 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M +   L ++DG S  +RAFYA P+ +     G   NA+ GF +ML  LL+N       +
Sbjct: 1   MTETARLLVIDGHSMAFRAFYALPVENFSTSTGQYTNAVYGFTSMLINLLRNEE----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR +IY DYK  R K PE    Q+ L++    A GI   E++GFE DD
Sbjct: 57  HLGVAFDVSRRTFRTDIYEDYKGTRAKTPEEFSGQIGLIKQVLDAMGIAHAELEGFEGDD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           I+AT++  A+ +G+   I+S D+D  QLV   T +    K      ++  E V  K+G+ 
Sbjct: 117 IVATWSAQADAKGWENLIVSGDRDSFQLVDDNTTVLYPKKGVSELSRMTPEAVEAKYGVS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P     L AL GD+ DN+ G+PG+G                          K   + + +
Sbjct: 177 PTHYPELAALVGDTSDNLTGVPGVGP-------------------------KTAAKWLAK 211

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLI-LEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           Y + A L                L+H   ++   G  L + L  ++  + +NR  T    
Sbjct: 212 YGDLANL----------------LDHADEIKGKVGDSLRAHLDDVKRNRELNRELTDLKL 255

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
                     +IN      +    +         S F    +   +   E    +    R
Sbjct: 256 PVDVEGLARAEINREAVHEVFDVLQFRTLRDRLFSVFPEAGETKGEEGFELEVTRPEPGR 315

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L        ++D     +  +    W      I + +F   T + DA             
Sbjct: 316 LGDWFAAHRSDDP----IGVEATGHWGAGTGDIDTLAF--ATTSDDA------------- 356

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                         +D+   T  D              L  +  +    K  H  K   L
Sbjct: 357 ------------ACVDVPELTPDDE-----------KALAAWLTDPQATKAMHGAKGPLL 393

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            L    + + G + D  L +Y+L   + S+D+  +A + L    +     + +   +D  
Sbjct: 394 ALWARQLDLAGLDSDTQLAAYLLRPDQRSYDLDDLALRHLGRELRVQDSEQVNQETLDFG 453

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S+ Q  E A+  +  I +L  +L  +L       +   L+ P+  V+++ME  G+ ID D
Sbjct: 454 SERQPAETAMLRARAIAELAGVLDGELDDTSQRGLLHSLEMPLERVLARMEQRGVAIDMD 513

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +L Q+ +E    + + E+  +   G + NL SPKQL  +LF +L  P   +TK+G     
Sbjct: 514 VLDQLRSEYDARVQAAEQAAFAAIGTQINLGSPKQLQAVLFDQLDMPKTKRTKSGYTTDA 573

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
               +      +P ++++L +R   K++    D+L    +    R+HT Y      TGRL
Sbjct: 574 DALEKLYQKTRHPFLEHLLAYRDTIKLR-QIIDTLIKSTSDDG-RIHTTYVQTVAGTGRL 631

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+T  G++IR AF+     + L+SADYSQIE+R++A  +    L   F 
Sbjct: 632 SSTDPNLQNIPIRTPEGRRIRDAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFA 691

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D H M A+ +F V +E+V+P  R   K +N+ + YG+S + L+++L +   EA   +
Sbjct: 692 SGADFHSMTASHVFDVPVEQVTPAQRSSVKQMNYGLAYGLSAYGLSSRLNVSVPEARALM 751

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF  F  + +Y++      R+ GY ET+ GRR +  ++NS     R + ER A+NAP+
Sbjct: 752 DQYFQTFGPVRDYLDSLVEKARKQGYTETMLGRRRYLPDLNSSNRQRRQMAERMALNAPM 811

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AM+ V + L    L ++MLLQIHDELV EV   E     QI+   M+ A 
Sbjct: 812 QGTAADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEVAAGERDRVQQIVGDKMKHA- 870

Query: 953 LPKINLRVPLKVNIKVSNNW 972
              I L VPL V+     +W
Sbjct: 871 ---IELTVPLDVSFGYGRSW 887


>gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 874

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/977 (28%), Positives = 458/977 (46%), Gaps = 114/977 (11%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  +RAF+A P  +     G   NA+ GF +M   ++   +     +H AV FD
Sbjct: 1   MLIDGHSMAFRAFFALPAENFSTSGGQHTNAVYGFLSMFANIIAEEK----PTHAAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR + +PDYKA R   P     Q+P++       GI  +  + FEADDI+AT   
Sbjct: 57  VGRTTFRTQRFPDYKAQREASPPEFKGQVPIIEDVLGELGIVTLSKENFEADDIVATLVT 116

Query: 127 IAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            A   G F + ++S D+D +QLV  +T L   ++      +   E V +K+G+ P +   
Sbjct: 117 EARAAGDFEIVLVSGDRDYIQLVDASTTLLYPMRGVSNMTRFTPESVEEKYGLTPAQYPD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P +P +G KTA   + +YG+L+                +++E+A+   
Sbjct: 177 FAALRGDPSDNLPSVPKVGEKTATKWIAQYGDLD----------------SLIEHAD--- 217

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                        I         E  +  RL   L  +     +       +   A++  
Sbjct: 218 ------------EIKGVAGDNFRERIDQVRLNRELTQMVTDVELPVGPEDLEVKPADVNA 265

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V    +  E      E  +    T   +    + ++  +I+ E TP              
Sbjct: 266 VASSFDNLEFGVNLRERVLAAVPTTGEAPAPEV-EELQEIDIEDTP-------------- 310

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                          + QW+ + +  G A   ++T           A+AI    ++    
Sbjct: 311 ---------------LDQWLTERKGQGLAV--VVTGNGAPGRGDASALAIVDKQRRG--- 350

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                I  ++   + Q+            S LK + E+E   K  H+ K    +L    I
Sbjct: 351 -----IHKEIPELSPQED-----------SALKVWVESED-PKYLHDAKTVFHMLKGRDI 393

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           ++RG   D  + +Y+L  G+ ++++  + Q+ L       L   + S+  D         
Sbjct: 394 TLRGIAHDTAIAAYLLRPGQRTYELHDVYQRHLQRQLN--LGGDQLSLLGD--------T 443

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             ++++  +L+L   L  +L       +Y  L+ P++ ++++ME  GI +D D+L+    
Sbjct: 444 SLVDSAAAVLELAEELSAQLRGIDSYDLYADLELPLVSILAEMENAGIAVDVDVLEAQLK 503

Query: 601 EISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           + +  +  +EE    L  E   NLSSPKQL  +LF KL+ P   KTKTG      +    
Sbjct: 504 DFTAKVAQVEEEARQLVDEPSLNLSSPKQLSVVLFDKLELPKTKKTKTGYSTAAGEIEAL 563

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                +P +  +L  R+  K+KST  + L   +     R+HT +      TGRL+S +PN
Sbjct: 564 AETNPHPFLDKLLAHREYQKMKST-IEGLIKAV-ADNGRIHTTFKQTVASTGRLSSTDPN 621

Query: 720 LQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++T+ G+KIR AF        L++ADYSQIE+R++AH+++ + L + +    D+H
Sbjct: 622 LQNIPVRTEAGRKIRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDLH 681

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             V + +F V I++V+P++RR  K +++ ++YG+S + L+ QL I   EA   ++ YF R
Sbjct: 682 NFVGSRVFDVPIDQVTPELRRRVKAMSYGLVYGLSAYGLSNQLSISAGEAKSIMESYFER 741

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+  Y++      R++GY  T+FGRR +  E+ S     R   ERAA+NAPIQGSAAD
Sbjct: 742 FGGVKSYLDNVVEQARRDGYTSTVFGRRRYLPELTSDNRVARENAERAALNAPIQGSAAD 801

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI V ++LE     +++LLQ+HDELV E+   E+    +I+   M+ A    I L
Sbjct: 802 IIKVAMIRVDRALES--FNSRVLLQVHDELVVEIAPGELAEVREIVEREMDSA----ITL 855

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPL+V+     NW E 
Sbjct: 856 LVPLEVSAGTGVNWDEA 872


>gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol]
 gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol]
          Length = 882

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/989 (30%), Positives = 467/989 (47%), Gaps = 122/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L LVDG+S  +RAF+A        +  +GL  NAI  F NM   ++Q      +
Sbjct: 1   MTKK-KLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKE----M 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     +K+ F V ++S D+DL QL + T  +  TVK     E    EH+ +K+ 
Sbjct: 116 DDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYD 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                      LT   I ++ G+               G+  + +   ++I +K   + +
Sbjct: 176 ----------GLTPKQIIDMKGLA--------------GDTSDNIPGVTKIGEKTAIKLL 211

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            +Y                          + E+ +  +     + L   K    ++    
Sbjct: 212 KQYGSV---------------------EGVYENIDEMKKSKMKENLINDKEQAFLSKRLA 250

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
               N  PV +++     +G  +E  +     +   QF       +K++  + P      
Sbjct: 251 TIEVN-APVKVNVEDLAYEGKNLEKLVPFYKEMDFKQF------LAKLDITEEP------ 297

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                    + +  +  + +    + +   +      +  +     +   S  +   ++ 
Sbjct: 298 -------VEMEDILFEVVEDQLTNEMFTDDM------ALYVEMMEDNYHTSPIVG--LAW 342

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            + K   +     +F                           +  +E   K  ++ K   
Sbjct: 343 GNDKKIYTTNNLAVFES--------------------QPFIDWLMDETRKKNVYDAKRTY 382

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +        K  K  +
Sbjct: 383 VALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGL 442

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D+        H       I  L   L  +L  +    ++ +++ P+  ++  MEITGI
Sbjct: 443 PEDE---EVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILGDMEITGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P   KTKTG
Sbjct: 500 RVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +      PI+ +IL +RQ++KI+STY + L   I    + +HT Y    T
Sbjct: 560 Y--STAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNK-IHTRYVQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+    L
Sbjct: 617 QTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHL 676

Query: 768 YQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + L+  L I R 
Sbjct: 677 KEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 736

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS   ++R+  ER 
Sbjct: 737 QAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERT 796

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E+   +Q++  
Sbjct: 797 AINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQLNQLVKE 856

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            ME A    ++L VPL  +      W E 
Sbjct: 857 VMEHA----VSLHVPLITDSSWGKTWYEA 881


>gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
 gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
          Length = 903

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/981 (29%), Positives = 468/981 (47%), Gaps = 117/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K+++  +      HF V 
Sbjct: 29  NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKIIKEEKPN----HFLVA 83

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 84  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 143

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++E F   II+ D+DL QL +    +Y T K     +    + + +K         
Sbjct: 144 SRQADEEDFETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPKFIAEK--------- 194

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L    I ++ G+               G+  + +   + + +K     +L   E+ 
Sbjct: 195 -YNGLVPKQIIDMKGL--------------MGDTSDNIPGVAGVGEKTAI-KLLNQFESV 238

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               +                  +E+    +L   L   +   L+++   T +  +    
Sbjct: 239 EGVYE-----------------HIEEVTAKKLKEKLINSKDDALMSKDLATINVHSP--- 278

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              ++++  + K    +    +    K  +F  L       ++ +       E  Q    
Sbjct: 279 ---IEVSLEDTKLTLQDDTTKKIELFKKLEFKQLLADIDTSSTNEEVIDKTFEIEQDFQN 335

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +N+ +                      A      +  +      +     T       
Sbjct: 336 VDLNDLN---------------------EAVIHFELEGTNYLKDTILKFGFYT------- 367

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                   + ++    +D             +L ++ E+++  KI ++ K   +  HR G
Sbjct: 368 ----NHQHVVINAEDVKDY-----------KHLVQWLEDKNTTKIVYDAKKTYVSAHRLG 412

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           I++     D+ML SY++D  RS  D+ S+   +     K+      K +K  IP + I  
Sbjct: 413 INIENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDNITIFGKGKKHHIPEEPI-- 470

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + EH    +  I  +   ++ +L     + + + L+ P+  ++S+ME  GI  D + L
Sbjct: 471 --LNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDL 528

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  EI K L  L  NI++ +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA 
Sbjct: 529 KEMEFEIQKKLDVLISNIHESAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAV 586

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G++PII +ILE+RQL+K++STY + L   I+K   R+HT ++     TGRL+S
Sbjct: 587 DVLEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKD-HRIHTRFNQTLAQTGRLSS 645

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   L   F N 
Sbjct: 646 IDPNLQNIPIRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESLKHAFING 705

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  
Sbjct: 706 HDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKQAKAFIDD 765

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FPG+ +Y+       +  GYVET+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 766 YLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQG 825

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+   + +++ K   K+LLQ+HDEL+FE+P+ E+   S+ +   ME+A + 
Sbjct: 826 SAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV- 884

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L VPLKV+      W + 
Sbjct: 885 ---LDVPLKVDSNYGATWYDA 902


>gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
 gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
          Length = 885

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/986 (30%), Positives = 491/986 (49%), Gaps = 113/986 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAFYA    L R    +GL  NAI  F NML  +L+       
Sbjct: 1   MANK-KLLLIDGNSVAFRAFYALYRQLDRFQNPEGLHTNAIYAFKNMLDVILKQEN---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD   VTFR ++Y DYK  R K P  LL Q+P ++   +  GI + E+  +EA
Sbjct: 56  PSHVLVAFDAGKVTFRTKLYSDYKGGRQKTPGELLEQIPYIKEMLKDLGIKSYELVNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDII TY+ + E+ G+ V I+S DKDL QL S +T +Y                  +   
Sbjct: 116 DDIIGTYSKMGEEAGYQVAIVSGDKDLTQLASDSTTVY------------------VTKS 157

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            +  L+A T + +     + G+       +    G+  +     +++  K     I +Y 
Sbjct: 158 GVSELEAFTPEHMKE---VNGVTPTEFIDMKALMGDNSDNYPGVTKVGPKTASNLIQKYG 214

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
               + +                   +++    +L   L   +    + +   T D    
Sbjct: 215 SVENIYK------------------HIDEMKKSKLKENLINDKDKAFLAKTLATID---- 252

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              PV   ++  + +   +   +D     +   F     + +  NSE             
Sbjct: 253 RTSPVEFKLDELKKQETNV---VDLRKFYEQMNFRRFLAELNNSNSE------------- 296

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKIITDTMDAFHSKPIAIAISTLDQ 416
                I   S  K+      +Q + KL  + S  SF +     +   +  +  ++   D 
Sbjct: 297 -----IGEVSDKKVDYIVLDEQNLNKLPNVKSEVSFYLGMFGENYHLADFVGFSLKMGDN 351

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              +                      N ++      L+   E++   K   ++K   + L
Sbjct: 352 VYVS----------------------NDVSLLTKQPLQTLLEDQAVNKNVFDLKRTIVGL 389

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPID 531
           HR GI       D++L SY++++  +S+D+  I Q +    L        K +K++IP +
Sbjct: 390 HRLGIKANNINYDMLLASYLVNNENNSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDE 449

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +I       H       I  L   L  +L   +   +YE ++ P+ +V+++MEITG++ D
Sbjct: 450 EI----FFNHLAGKVLAIEALKPTLLKRLTEHEQDDLYETIEMPVANVLAKMEITGLKTD 505

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  +  + L  LE +IY  +GE+FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 506 ASTLVQLGNDFGQRLTELEADIYLEAGERFNINSPKQLGQILFEKLELPPIKKTKTG-YS 564

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + LEQ+    +PI++ +L++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 565 TSVEVLEQLK-DQSPIVQKVLDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYQQTLTATG 622

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP++ + G+KIR+AFI       + S DYSQ+ELR+LAH++    + + 
Sbjct: 623 RLSSVDPNLQNIPVRLEEGKKIRKAFIPSNKDGYIFSCDYSQVELRVLAHVSGDENMQEA 682

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF ++  ++V+P MRRHAK +NF I+YGIS + L+  L I R +A 
Sbjct: 683 FKTGYDIHAHTAMKIFHLDSPDEVTPNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAK 742

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I +Y++K  NF R+ GYVETI  RR +  +I++   ++R+  ER AIN
Sbjct: 743 EFIDNYFEQYPKIKDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAERTAIN 802

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQG AADI + AMI++ K L++  L +KML+Q+HDEL+F+VP +E+ T  +++   M+
Sbjct: 803 SPIQGGAADIIKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQ 862

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    ++L VPL  +    ++W E 
Sbjct: 863 NA----VHLDVPLVADSNWGHDWYEA 884


>gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
          Length = 887

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/985 (32%), Positives = 465/985 (47%), Gaps = 116/985 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           E  L L+DG+S ++RAFYA           DGL   AI GF  ML  +L N + ++    
Sbjct: 3   EKQLLLIDGNSIVFRAFYAMHTQIDRFTNQDGLHTAAIYGFKLMLDHVLDNFKPDA---- 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR   Y DYKA R K PE L  Q P VR   +A G+ + E+  +EADDI
Sbjct: 59  ALVAFDAGKTTFRTAKYHDYKAGRAKTPEELTEQFPYVRQLVEASGLHSYELPDYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A++ GF   I+S D+DL QL +  T +  T K     E    E++ +K G   
Sbjct: 119 IGTLAKQADQAGFRTLIVSGDRDLTQLATDHTTVAVTKKGVTQTEHFTPEYMKEKLG--- 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
                                 +       +    G+  +     ++I +K     I EY
Sbjct: 176 ----------------------VTPTQFIDVKALMGDSSDNYPGVTKIGEKTALNLIREY 213

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                              L    + ++  K   R     + +A
Sbjct: 214 G---------------------------------SLDGLYENIDQMKKSKRKENLINEEA 240

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +   L       +  A       D   +  Q   L D   K+N      K FL ++Q
Sbjct: 241 IARQCQDL----ARIRRDAPVKIGLADLAYEGPQQEKLIDLFEKLNF-----KSFLAKMQ 291

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     S              +  +      F +     +   S      I +   
Sbjct: 292 VAPDTHQPVVSEQVQFTELTTDNLAELKQIKDQMVFLLELPDPNYHVSAVAGFVIGSQG- 350

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                            H       +     EI    K+  EN    K   N K   + L
Sbjct: 351 -----------------HWWVSQDPELLSAPEI----KELLENPKIKKDTFNAKAHYVAL 389

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKS-SIPID 531
           HR GI + G   D +L+SY+L++  +S+D+  +A +   Y     +E+    KS  +P D
Sbjct: 390 HRQGIELHGNGFDFLLVSYLLNTNDNSNDLGQLAHEHNYYQVQSDEEVYGKGKSRHLPDD 449

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +   S    H ++    I QL   L  +L   +   +Y  +++P+  V+++MEI G+ +D
Sbjct: 450 R---SVFFTHLVQKGMAIEQLKHPLTDQLHENEQWPLYTDIERPLSHVLAKMEIAGVHVD 506

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              LK++ +++ + L  LE+ IY+ +GE+FN++S KQLG ILF K+K P   KTKTG   
Sbjct: 507 ATTLKEMGSKLKERLAELEQAIYNEAGEEFNINSTKQLGTILFEKMKLPVIKKTKTGY-- 564

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T+ ++ +   G  PII NIL +RQ+SKI+STY   L   I+   Q++HT Y    T TG
Sbjct: 565 STSVEVLEKLQGRAPIIDNILVYRQISKIQSTYITGLLKVIHSSDQKIHTRYLQTLTQTG 624

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP++ + G+KIRRAF    P  K+ S+DYSQ+ELR+LAH+     L Q 
Sbjct: 625 RLSSVDPNLQNIPVRLEEGRKIRRAFKPSQPGWKIFSSDYSQVELRVLAHVTGDRNLQQD 684

Query: 771 FENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F +  DIH   A  IF +   EKV+P MRR AK +NF I+YGIS + L+  + + R +A 
Sbjct: 685 FIDGKDIHESTARRIFHLLPGEKVTPNMRRQAKAVNFGIVYGISDYGLSQNIHVTRKQAH 744

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I+ YF  FPG+ EYIE      ++ GYVET+  RR +  EINS   S R+  ER A+N
Sbjct: 745 EFIQSYFKEFPGVQEYIENIVKLAKKQGYVETLTHRRRYLPEINSKNFSRRSFAERTAMN 804

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQGSAADI + AMI++++ L+   L  KMLLQIHDEL+FE PEEEI    +++   M+
Sbjct: 805 TPIQGSAADIIKIAMINMNEQLQKAGLKAKMLLQIHDELIFEAPEEEIDQLRELVPKVMD 864

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A    + L VPLKV  KV + W +
Sbjct: 865 SA----VKLDVPLKVESKVGDTWYD 885


>gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
 gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
          Length = 916

 Score =  680 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/985 (29%), Positives = 482/985 (48%), Gaps = 85/985 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA++A      K++  P  A+ GF N L  +++    +    + A  
Sbjct: 2   KRAVLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIIKEFNPD----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    +  R EI+ DYK+NR   PE L+ Q+P +     AF I    I+ +EADD++ +
Sbjct: 56  FDVKRSSLKRTEIFGDYKSNRQSTPEDLVAQIPRIEEVLDAFNINRYRIESYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWGIPP 176
                 K+   V I++ DKDL QLV     +    K  +          E V+   G+ P
Sbjct: 116 IAKKIAKDDLEVIIVTGDKDLSQLVEKNITIALLGKGTEGEKFGMLRTAEDVVNYLGVVP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRE 231
           EK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +
Sbjct: 176 EKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSKYDSLEKIYENIDDLKNIEGIGPSLIK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N+    + A LSR+L  + T++ I +  E+L     +  +L    K LEF   I ++   
Sbjct: 236 NLTNEKDIAFLSRELAKIFTNLDINLEEENLKYS-MDKEKLYELCKTLEFKMFIKKLNLE 294

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                +N +   + ++  +      +TE      +   + +                   
Sbjct: 295 EKTQTSNFDHKPVLLSLFDKVEEVEKTEKVEKEIVYEKELN------------------- 335

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                       +N     I N   + +  + L      +         + + + + I +
Sbjct: 336 ---------INFSNRELVIIDNETLLNEQKEYLNNYKKIA---------SIYYEELGIIL 377

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           ST +   D  F +                 KN     ++ ++ +         I +N K 
Sbjct: 378 STEE--KDLYFPLNHGG----------LLSKNIDKNTLIKFIAEL----DVKFISYNFKT 421

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
               L   G + +     M+++Y L S ++  D+     ++ +   K+  K+      I+
Sbjct: 422 ----LLNLGFTFKSMYMDMMIAYHLISSQTKMDVFIPITEYSNVDAKDF-KTTFGKAHIE 476

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +   +   +  +    IL ++  +   L  E+L  +  + + P+I V+S ME  GI+ID
Sbjct: 477 TLLVGEFAGYLSKIGLGILAIYDEINHILHKEELYDILIQNEMPLIPVLSLMERKGIKID 536

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K  S E+ K L  +E+ IY+ +GE+FN++SPKQLGDILF K+  PSG KTKTG + 
Sbjct: 537 VSYFKNYSLELEKELAKIEKAIYEEAGEEFNINSPKQLGDILFVKMNLPSGKKTKTG-YS 595

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T    LE +      I + +L++R+L+K+K+TY D+LPN ++    R+HT ++   T TG
Sbjct: 596 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPNLVD-SNSRIHTSFNQIGTATG 654

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S EPNLQNIP+KTD G KIR  F++   K L+S DYSQ+ELR+L  ++K   L + +
Sbjct: 655 RLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAY 714

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               D+H + A  IF + + + V+ + R  AK INFSIIYG + F LA +L+IP  +A++
Sbjct: 715 REEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVKDASE 774

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIK+YF ++P +  + ++   F  ++GYV+T+FGR+ +   I+S   +I+   ER A+N 
Sbjct: 775 YIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERMAVNT 834

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQG+AA++ ++ M+ V+++L+D      +LLQ+HDEL+FEV E  +   S+I+   M+ 
Sbjct: 835 VIQGTAAEVLKKVMLKVYETLKDKD-DIALLLQVHDELIFEVEESSVEKYSEILADIMKN 893

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
               +    V L +NI +  NW E 
Sbjct: 894 TVKLE---DVNLNININIGKNWAEA 915


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/974 (28%), Positives = 464/974 (47%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++
Sbjct: 57  LDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    
Sbjct: 117 VKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+G++E I  N + I+ ++ R  +LE  E A LS
Sbjct: 177 ALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLIRNERSRNLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S    LE   LI +       D   +  ++
Sbjct: 237 KKLA--------------------------SLYDNLEVQNLIEK---ATYPDEEPLLKIL 267

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E   +  +   + D   K   F +                              
Sbjct: 268 EILEHYELNTLLKKLRQNPDNKDKNLGFKA------------------------------ 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T + +   + + +  L+     +F   T  +D   +K +  +    + +      
Sbjct: 298 -----TLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAKIVGFSFCMNENE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
               ++ L+ +      G+    +     ++  F   +   IGHN+KYD  ++   +G++
Sbjct: 347 --AFYVPLTHNYL--GVGEQISLQSAKKAIEVIF---NHFVIGHNLKYDFKIIQNNFGLN 399

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + + + D M+++++ +   S  ++  +A +  +Y         K       +   +  ++
Sbjct: 400 LPQKYADTMILAWLKNPS-SRVNMDDLALRLFNYETLHFESLVKKGENFASVELEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L    LL + +  +   I ++  ME  GI+++ + L+ +  +
Sbjct: 459 AAEDAYITLRFYLDFLKNLETP-LLELAKNCEFDFIKIIMMMEENGIKLNTNALEILMKK 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               + +L E IY L  ++FNL+SPKQ+GDILF KLK PSG K KTG   +T + +  I 
Sbjct: 518 FENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGY--STDEKVLNIL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +P+I  IL++R+L+K+ STY + L    +  +  R+++ +    T TGRL+S +PNL
Sbjct: 576 LDKHPVITKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  F++      IS DYSQIELR+LAH ++   L   F N  DIH  
Sbjct: 636 QNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHAR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + + + R  AK+INF +IYG+    L+  L+I    A  YI++YF  F 
Sbjct: 696 TAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +Y E  KN  +QNG++ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAAD+ 
Sbjct: 752 SIKKYFETVKNEAKQNGFITTLSGRKRYFDFENA-KPMQIAMYERESINSILQGSAADVI 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ ++K L + K   K++LQIHDEL+FEV ++      +     ME      + L+V
Sbjct: 811 KLAMLEINKELNEDK---KLILQIHDELIFEVKDDLCENFVKKTRDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQE 974
            LK +  ++ NW +
Sbjct: 864 KLKTSSSIAKNWGD 877


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/974 (28%), Positives = 464/974 (47%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++
Sbjct: 57  LDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    
Sbjct: 117 VKTCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS
Sbjct: 177 ALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S    LE   LI +       D   +  ++
Sbjct: 237 KKLA--------------------------SLYDNLEVQNLIEK---ATYPDEEPLLKIL 267

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E   +  +   + D   K   F +                              
Sbjct: 268 EILEHYELNTLLKKLRQNPDNKDKNLGFKA------------------------------ 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T + +   + + +  L+     +F   T  +D   +K +  +    + +      
Sbjct: 298 -----TLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAKIVGFSFCMNENE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
               ++ L+ +      G+    +     ++  F   +   IGHN+KYD  ++   + ++
Sbjct: 347 --AFYVPLTHNYL--GVGEQISLQSAKKAIEAIF---NHFVIGHNLKYDFKIIQNNFDLN 399

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + + + D M+++++ +      ++  +A +  +Y         K       +   +  ++
Sbjct: 400 LPQKYADTMILAWLKNPS-LRVNMDDLALRLFNYETLHFESLVKKGENFASVELEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L    LL + +  +   I ++  ME  GI++D + L+ +  +
Sbjct: 459 AAEDAYITLRFYLYFLKNLETP-LLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKK 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               + +L E IY L  ++FNL+SPKQ+GDILF KLK PSG K KTG   +T + +  I 
Sbjct: 518 FENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGY--STDEKVLNIL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +P+I  IL++R+L+K+ STY + L    +  +  R+++ +    T TGRL+S +PNL
Sbjct: 576 LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  F++      IS DYSQIELRILAH ++   L   F N  DIH  
Sbjct: 636 QNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHAR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + + + R  AK+INF +IYG+    L+  L+I  + A  YI++YF  F 
Sbjct: 696 TAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAKSYIEKYFENFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +Y EK KN  +QNG++ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAAD+ 
Sbjct: 752 SIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENA-KPMQIAMYERESINSILQGSAADVI 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ ++K L + K   K++LQIHDEL+FEV ++      +     ME      + L+V
Sbjct: 811 KLAMLEINKELNEDK---KLILQIHDELIFEVKDDLCENFVKKTRDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQE 974
            LK +  ++ NW +
Sbjct: 864 KLKTSSSIAKNWGD 877


>gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/981 (29%), Positives = 468/981 (47%), Gaps = 117/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K+++  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKIIKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++E F   II+ D+DL QL +    +Y T K     +    + + +K         
Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPKFIAEK--------- 167

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L    I ++ G+               G+  + +   + + +K     +L   E+ 
Sbjct: 168 -YNGLVPKQIIDMKGL--------------MGDTSDNIPGVAGVGEKTAI-KLLNQFESV 211

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               +                  +E+    +L   L   +   L+++   T +  +    
Sbjct: 212 EGVYE-----------------HIEEVTAKKLKEKLINSKDDALMSKDLATINVHSP--- 251

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              ++++  + K    +    +    K  +F  L       ++ +       E  Q    
Sbjct: 252 ---IEVSLEDTKLTLQDDTTKKIELFKKLEFKQLLADIDTSSTNEEVIDKTFEIEQDFQN 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +N+ +                      A      +  +      +     T       
Sbjct: 309 VDLNDLN---------------------EAVIHFELEGTNYLKDTILKFGFYT------- 340

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                   + ++    +D             +L ++ E+++  KI ++ K   +  HR G
Sbjct: 341 ----NHQHVVINAEDVKDY-----------KHLVQWLEDKNTTKIVYDAKKTYVSAHRLG 385

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           I++     D+ML SY++D  RS  D+ S+   +     K+      K +K  IP + I  
Sbjct: 386 INIENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDNITIFGKGKKHHIPEEPI-- 443

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + EH    +  I  +   ++ +L     + + + L+ P+  ++S+ME  GI  D + L
Sbjct: 444 --LNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDL 501

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  EI K L  L  NI++ +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA 
Sbjct: 502 KEMEFEIQKKLDVLISNIHESAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAV 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G++PII +ILE+RQL+K++STY + L   I+K   R+HT ++     TGRL+S
Sbjct: 560 DVLEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKD-HRIHTRFNQTLAQTGRLSS 618

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   L   F N 
Sbjct: 619 IDPNLQNIPIRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESLKHAFING 678

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  
Sbjct: 679 HDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKQAKAFIDD 738

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FPG+ +Y+       +  GYVET+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 739 YLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQG 798

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+   + +++ K   K+LLQ+HDEL+FE+P+ E+   S+ +   ME+A + 
Sbjct: 799 SAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV- 857

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L VPLKV+      W + 
Sbjct: 858 ---LDVPLKVDSNYGATWYDA 875


>gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
 gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
          Length = 880

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/991 (31%), Positives = 483/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTAAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GD  DN   IPG                       ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALMGDKSDN---IPG----------------------VTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +  E  +G           F     +    
Sbjct: 212 LLHEFG--------------------SLEGI-YEHIDG-----------FKTSKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAVISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLSLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRTTLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDK 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS]
 gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS]
          Length = 880

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/991 (30%), Positives = 483/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GD  DN   IPG                       ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALMGDKSDN---IPG----------------------VTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +  E  +G           F     +    
Sbjct: 212 LLHEFG--------------------SLEGI-YEHIDG-----------FKTSKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAVISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DL +  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLGLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA ++ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVNVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDRAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+    ++W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGHSWYEA 879


>gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116]
 gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1]
 gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 879

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/974 (28%), Positives = 463/974 (47%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++
Sbjct: 57  LDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    
Sbjct: 117 VRTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPHQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS
Sbjct: 177 ALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S  + LE   LI +       D   +  ++
Sbjct: 237 KKLA--------------------------SLYENLEVQDLIEK---ATYPDEEPLLKIL 267

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E   +  +   + D   K   F +                              
Sbjct: 268 EILEHYELNTLLKKLRQNPDNKDKNLGFKA------------------------------ 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T I +   + + +  L+     +F   T  +D   +K +  +    + +      
Sbjct: 298 -----TLIQDENKLFEILNTLDKESIIAFDTETTGLDTKEAKIVGFSFCMSENE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
               ++ L+ +      G+    +     ++  F   +   IGHN+KYD  ++   +G++
Sbjct: 347 --AFYVPLTHNYL--GVGEQISLQSAKKAIEVIF---NHFVIGHNLKYDFKIIQNNFGLN 399

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + + + D M+++++ +      ++  +A +  +Y         K       +   +  ++
Sbjct: 400 LPQKYADTMILAWLKNPS-LRVNMDDLALRLFNYETLHFESLVKKGENFASVELEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L    LL + +  +   I ++  ME  GI++D + L+ +  +
Sbjct: 459 AAEDAYITLRFYLYFLKNLETP-LLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKK 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               + +L E IY L  ++FNL+SPKQ+GDILF KLK PSG K KTG   +T + +    
Sbjct: 518 FENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGY--STDEKVLNAL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +P+I  IL++R+L+K+ STY + L    +  +  R+++ +    T TGRL+S +PNL
Sbjct: 576 LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  F++      IS DYSQIELR+LAH ++   L   F N  DIH  
Sbjct: 636 QNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHAR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + + + R  AK+INF +IYG+    L+  L+I    A  YI++YF  F 
Sbjct: 696 TAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +Y E  KN  +QNG++ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAAD+ 
Sbjct: 752 SIKKYFETVKNKAKQNGFITTLSGRKRYFDFENA-KPMQIAMYERESINSILQGSAADVI 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ ++K L + K   K++LQIHDEL+FEV ++      +     ME      + L+V
Sbjct: 811 KLAMLEINKELNEDK---KLILQIHDELIFEVKDDLCENFVKKTRDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQE 974
            LK +  ++ NW +
Sbjct: 864 KLKTSSSIAKNWGD 877


>gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028]
          Length = 876

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/981 (29%), Positives = 467/981 (47%), Gaps = 117/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K+++  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKIIKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++E F   II+ D+DL QL +    +Y T K     +    + + +K         
Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPKFIAEK--------- 167

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L    I ++ G+               G+  + +   + + +K     +L   E+ 
Sbjct: 168 -YNGLVPKQIIDMKGL--------------MGDTSDNIPGVAGVGEKTAI-KLLNQFESV 211

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               +                  +E+    +L   L   +   L+++   T +  +    
Sbjct: 212 EGVYE-----------------HIEEVTAKKLKEKLINSKDDALMSKDLATINVHSP--- 251

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              ++++  + K    +    +    K  +F  L       ++ +       E  Q    
Sbjct: 252 ---IEVSLEDTKLTLQDDTTKKIELFKKLEFKQLLADIDTSSTNEEVIDKTFEIEQDFQN 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +N+ +                      A      +  +      +     T       
Sbjct: 309 VDLNDLN---------------------EAVIHFELEGTNYLKDTILKFGFYT------- 340

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                   + ++    +D             +L ++ E+++  KI ++ K   +  HR G
Sbjct: 341 ----NHQHVVINAEDVKDY-----------KHLVQWLEDKNTTKIVYDAKKTYVSAHRLG 385

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           I++     D+ML SY++D  RS  D+ S+   +     K+      K +K  IP + I  
Sbjct: 386 INIENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDNITIFGKGKKHHIPEEPI-- 443

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + EH    +  I  +   ++ +L       + + L+ P+  ++S+ME  GI  D + L
Sbjct: 444 --LNEHIASVTEAIAAVTPTMKSQLEDYNQNELLKDLELPLARILSEMEEIGIYTDINDL 501

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  EI K L  L  NI++ +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA 
Sbjct: 502 KEMEFEIQKKLDVLISNIHESAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAV 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G++PII +ILE+RQL+K++STY + L   I+K   R+HT ++     TGRL+S
Sbjct: 560 DVLEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKD-HRIHTRFNQTLAQTGRLSS 618

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   L   F N 
Sbjct: 619 IDPNLQNIPIRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESLKHAFING 678

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  
Sbjct: 679 HDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKQAKAFIDD 738

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FPG+ +Y+       +  GYVET+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 739 YLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQG 798

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+   + +++ K   K+LLQ+HDEL+FE+P+ E+   S+ +   ME+A + 
Sbjct: 799 SAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV- 857

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L VPLKV+      W + 
Sbjct: 858 ---LDVPLKVDSNYGATWYDA 875


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/974 (28%), Positives = 464/974 (47%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L +VD   F +R +YA     +   G     I+GF N ++ L    + E  + +    
Sbjct: 2   KTLTIVDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++
Sbjct: 57  LDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    
Sbjct: 117 VKTCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS
Sbjct: 177 ALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S    LE   LI +       D   +  ++
Sbjct: 237 KKLA--------------------------SLYDNLEVQNLIEK---ATYPDEEPLLKIL 267

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E   +  +   + D   K   F +                              
Sbjct: 268 EILEHYELNTLLKKLRQNPDNKDKNLGFKA------------------------------ 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T + +   + + +  L+     +F   T  +D   +K +  +    + +      
Sbjct: 298 -----TLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAKIVGFSFCMNENE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
               ++ L+ +      G+    +     ++  F   +   IGHN+KYD  ++   + ++
Sbjct: 347 --AFYVPLTHNYL--GVGEQISLQSAKKAIEVIF---NHFVIGHNLKYDFKIIQNNFDLN 399

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + + + D M+++++ +      ++  +A +  +Y         K       +   +  ++
Sbjct: 400 LPQKYADTMILAWLKNPS-LRVNMDDLALRLFNYETLHFESLVKKGENFASVELEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L    LL + +  +   I ++  ME  GI++D + L+ +  +
Sbjct: 459 AAEDAYITLRFYLYFLKNLETP-LLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKK 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               + +L E IY L  ++FNL+SPKQ+GDILF KLK PSG K KTG   +T + +  I 
Sbjct: 518 FENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGY--STDEKVLNIL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +P+I  IL++R+L+K+ STY + L    +  +  R+++ +    T TGRL+S +PNL
Sbjct: 576 LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  F++      IS DYSQIELRILAH ++   L   F N  DIH  
Sbjct: 636 QNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHAR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + + + R  AK+INF +IYG+    L+  L+I  + A  YI++YF  F 
Sbjct: 696 TAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAKSYIEKYFENFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +Y EK KN  +QNG++ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAAD+ 
Sbjct: 752 SIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENA-KPMQIAMYERESINSILQGSAADVI 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ ++K L + K   K++LQIHDEL+FEV ++      +     ME      + L+V
Sbjct: 811 KLAMLEINKELNEDK---KLILQIHDELIFEVKDDLCENFVKKTRDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQE 974
            LK +  ++ NW +
Sbjct: 864 KLKTSSSIAKNWGD 877


>gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
 gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
          Length = 885

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/976 (30%), Positives = 468/976 (47%), Gaps = 106/976 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            ++D S+ +YR  +A  +  R   G    A  GF N L  +++    + + +   V    
Sbjct: 5   VILDTSAIMYRTHFAL-MGMRNSKGKATGATYGFINTLNLIIKEFSPDYLVACLDV---K 60

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
            +   R     +YKA+R  +PE L+ Q+P +     A+ IP  ++ G+EADD+IAT    
Sbjct: 61  RSELKRTSELTEYKAHREDMPEELVYQIPKIMEVLDAYNIPKYKVDGYEADDVIATLAKK 120

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-------KIDIEHVIKKWGIPPEKMV 180
              +   V I++ DKDLMQL+     +    K +           + V++  G+ P++++
Sbjct: 121 FSDDNNEVFIVTGDKDLMQLIKDNINIALLGKGDGKSQFKYIQTEQDVVEYLGVRPDQVI 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L GD  D IPGI GIG KT   L+ +YGNLE +  N   IK  KR+E +    E A
Sbjct: 181 DLFGLMGDKSDGIPGIQGIGPKTGVELISKYGNLETLYENIEEIKG-KRKEKLENEKENA 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LSR+L  +  D+ +    E L  E+ N  +LI   K +EF + +         DA   +
Sbjct: 240 FLSRELATVHMDLDVEYNKEKLKYEEKNMDKLIPLYKEMEFKRFLE--------DAERAK 291

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            +   +  T  +    E         K + F                             
Sbjct: 292 KIANPLQGTLFQTAVQEKIPAVKEEKKETPF----------------------------- 322

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I   +  ++ + K+       F              +   IS  ++    
Sbjct: 323 ------QYEIIETLEKAEE-ITKIIGDEVTVFDNE-----------LGFGISNKEKN--- 361

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I  +            +  +   +LKK F++++     +NIK     L + G
Sbjct: 362 ------YYIPAA------------IISDKADFLKK-FKDKNV--NAYNIKE----LFKSG 396

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +  + + DIML+ YVL    ++ D+ SI         ++     K    +D++S  +  E
Sbjct: 397 LEYKDYFDIMLVWYVL-GTEAAQDLESIIFSEFQVLLEKYEVEFKKQ-NMDEVSPERKAE 454

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
              + S  + +L  +L  +L  E L +VYE ++K ++ V++ ME  GI ID D   +   
Sbjct: 455 FLTKRSYYMTRLKEILGHRLEAEGLNNVYENIEKKLVPVLADMEKKGILIDPDYFGKYGN 514

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+  NL  +E+NIY L+GE+FN++SPKQL +ILF K+      KTKTG + T  + LE +
Sbjct: 515 ELKNNLAEIEKNIYGLAGEEFNINSPKQLSEILFEKMMLDPVKKTKTG-YSTDVEVLEVL 573

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                 + + ILE+R  +K+ +TY + LP   +    R+HT +    T TGRL+S  PN+
Sbjct: 574 AAQGVEVAEKILEYRGYTKLLTTYVEPLPKLADSEN-RIHTTFHQNGTATGRLSSSNPNI 632

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP+KTD G KIRR F+S      IS DYSQIELR+LA +++   L   ++   D+H +
Sbjct: 633 QNIPVKTDEGIKIRRGFVSEEGWSFISFDYSQIELRVLAELSEDETLILAYQKDKDLHDL 692

Query: 781 VAAEIF-GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            A ++F   + E VS + R  AK INFSI+YG +PF L+ +L+IP  +A  YI +YF  +
Sbjct: 693 TARKLFFKTDEEPVSREERSIAKVINFSILYGKTPFGLSKELKIPMGDAKLYINKYFEEY 752

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +  ++       + NG+VET++G R +   INS   +I    +R A+N  +QG+AA+I
Sbjct: 753 PRVRTFLNSVLQEAKLNGFVETLYGTRRYITGINSSNKNIEAQADRMAVNTVVQGTAANI 812

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +  M+ +++  +D +    MLLQ+HDEL+FEV  E +    + I + ME      I L+
Sbjct: 813 IKIVMVKLYEEFKDKE-DINMLLQVHDELIFEVKNESVDKYLKEIDNIMEN----TIKLK 867

Query: 960 -VPLKVNIKVSNNWQE 974
            V L  N  V  NW E
Sbjct: 868 NVRLAANGNVGKNWGE 883


>gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
 gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
          Length = 876

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/981 (29%), Positives = 469/981 (47%), Gaps = 117/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K+++  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKIIKEEKTN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++  F   II+ D+DL QL +    +Y T K     +    E + +K         
Sbjct: 117 SRQADEADFETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPEFIAEK--------- 167

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             Q L    I ++ G+               G+  + +   + + +K     +L   E+ 
Sbjct: 168 -YQGLVPKQIIDMKGL--------------MGDTSDNIPGVAGVGEKTAI-KLLNQFESV 211

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               +                  +E+    +L   L   +   L+++   T +  +    
Sbjct: 212 EGVYE-----------------HIEEVTAKKLKEKLINSKADALMSKDLATINVHSP--- 251

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              ++++  + K    +   ++    K  +F  L       ++ +       E  Q    
Sbjct: 252 ---IEVSLEDTKLTLQDDTAEKIELFKKLEFKQLLADIDTPSNNEEVIDKTFEIEQDFQN 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +N+ +                      A      +  +      +     T       
Sbjct: 309 VDLNDLN---------------------EAVIHFELEGTNYLKDAILKFGFYT------- 340

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                   + ++    ++              L ++ E+++  KI ++ K   +  HR G
Sbjct: 341 ----NHQHVVINADDVKNY-----------KNLVRWLEDKNTTKIVYDAKKTYVSAHRLG 385

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           I++     D+ML SY++D  RS  D+ S+   +     K+      K +K  IP + I  
Sbjct: 386 INIENIEFDVMLASYIIDPSRSIDDVKSVVGLYGQNYVKDNITVFGKGKKHHIPEESI-- 443

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + EH    +  I  +  +++ +L     + + + L+ P+  ++S+ME  GI  D + L
Sbjct: 444 --LNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDL 501

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  EI K L  L  NI++ +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA 
Sbjct: 502 KEMEFEIQKKLDVLISNIHESAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAV 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G++PII +ILE+RQLSK++STY + L   I+K   R+HT ++     TGRL+S
Sbjct: 560 DVLEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKD-HRIHTRFNQTLAQTGRLSS 618

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   L   F N 
Sbjct: 619 VDPNLQNIPIRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESLKHAFING 678

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  
Sbjct: 679 HDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDD 738

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FPG+ +Y+       +  GYVET+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 739 YLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQG 798

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+   + +++ K   K+LLQ+HDEL+FE+P+ E+   S+ +   ME+A + 
Sbjct: 799 SAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV- 857

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L VPLKV+      W + 
Sbjct: 858 ---LDVPLKVDSNYGATWYDA 875


>gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a]
 gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a]
          Length = 884

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/975 (26%), Positives = 439/975 (45%), Gaps = 100/975 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  YRAFYA P+ +     G P NA+ GF +ML  +L++ +     +H AV +D
Sbjct: 1   MLLDGHSLAYRAFYALPVENFSTTTGQPTNAVYGFTSMLINVLRDEK----PTHVAVAWD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  TFR+  Y +YKA R + P   + Q+ L+     A  +P +   G+EADD+IAT   
Sbjct: 57  LPTPTFRHTQYAEYKAGRSETPADFVGQVSLIHQVCDALAVPGVSAAGYEADDVIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
                G  V +++ D+D +QLV     +  T K      +   + V  K+G+ P +    
Sbjct: 117 AGAAVGMDVLVVTGDRDALQLVDERVTVLMTRKGISDMTRFTPDEVQAKYGLSPVQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL                          G+  + L +   + +K   + I ++   A  
Sbjct: 177 AALR-------------------------GDPSDNLPSVPGVGEKTATKWIQQFGSLA-- 209

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
             +LV    ++               G  L + L ++   + +  ++         + P 
Sbjct: 210 --ELVDRADEI-----------GGKTGASLRAHLASVIRNRSLTELSRDVPL---PVGPD 253

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L +   + + +    +  +   ++   +++L+     +      +              
Sbjct: 254 ELRLRPWDREAVHQLFDTLQFRVLRERLYAALATAPPPVEEGFEVEL------------- 300

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                    +   ++ QW+ +                   H++ +               
Sbjct: 301 -------TTLGPDEVAQWLDE-------------------HARGVGRTGLHPRGTWGRGT 334

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V +     S   +        LT   L+ L  +  + H  K  H++K   L L   G++
Sbjct: 335 GVLSGLALASADGAAAWLDPTQLTPADLAALGGWLADAHQPKAAHDVKGPMLALAELGLT 394

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + G   D  L +Y+   G+ S D+A +  ++L +    +  +    + +D   +++    
Sbjct: 395 LAGVTSDTALAAYLALPGQRSFDLADLVARYL-HRDLAVEPAGNGQLTLDGSGEAEESHA 453

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +   L+L   L   L       +   ++ P++ V++ ME  GI  DQD L ++   
Sbjct: 454 DAVRARACLELADELDADLERRSAAVLLRDMELPLVTVLAGMERAGIAADQDHLTELQKH 513

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               + ++    +++ G  FNL SPKQL  ILF  L  P   K KTG             
Sbjct: 514 YGGEVTAVAAQAHEIVGRTFNLGSPKQLQQILFDDLGLPKTKKIKTGYTTDADALAWLAV 573

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D+P++  +L  R ++++K T  DSL   I+    R+HT ++     TGRL+S +PNLQ
Sbjct: 574 QSDHPLLPVLLRHRDVARLK-TVVDSLLPMID-DAGRIHTTFNQMIAATGRLSSTDPNLQ 631

Query: 722 NIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+T  G++IRRAF+  P    L++ADYSQIE+RI+AH++    L + F +  D+H  
Sbjct: 632 NIPIRTAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTF 691

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           VAAE FG+ + +V P++RR  K +++ + YG+S F LA+QL I   EA +++  YF RF 
Sbjct: 692 VAAEAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLASQLGIAPDEAREHMDAYFGRFG 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ +++       R++GY ET+ GRR +  ++ S  +  R + ER A+NAPIQGSAADI 
Sbjct: 752 GVRDFLRGVVERARRDGYTETMLGRRRYLPDLTSDNAQRRQMAERMALNAPIQGSAADII 811

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ V ++L     A+++LLQ+HDELV E+   E      ++   M  A      + V
Sbjct: 812 KIAMLGVDRALRAGGHASRLLLQVHDELVLEIAPGEYDAVEALVRAEMTSA----YTMSV 867

Query: 961 PLKVNIKVSNNWQEE 975
           PL V++     W + 
Sbjct: 868 PLDVSVGAGRTWDDA 882


>gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
 gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
          Length = 917

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/991 (29%), Positives = 455/991 (45%), Gaps = 115/991 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           K   + L+DG S  +RAF+A PL     R   G P NA+ GF +ML KLL    KE    
Sbjct: 22  KRPVMLLIDGHSMAFRAFFALPLDGGRFRTKSGQPTNAVYGFTSMLIKLL----KEEAPG 77

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + A  FD    TFR E+YP+YKA R   P+    Q+ +V+    A GIP +  +G+EADD
Sbjct: 78  YVAAAFDVSRQTFRAEMYPEYKAQRSSAPDDFRGQVDVVKDVLAAMGIPTMAQEGYEADD 137

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           IIAT T  A+++GF V I++ D+D +QLV+    +    K      +   E V  K+G+ 
Sbjct: 138 IIATMTTRAQEQGFDVLIVTGDRDALQLVNEHVTVLYPRKGVSDLTRFTPEEVDAKYGLT 197

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +     AL GD  DN+PGIPG                         + +K   + I E
Sbjct: 198 PSQYPDYAALRGDPSDNLPGIPG-------------------------VGEKTAAKWIRE 232

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI-----SFLKALEFTKLINRVAT 290
           Y                      LE L+    N  ++      S  + L   +L  ++  
Sbjct: 233 YG--------------------SLEGLVE---NVDKVKGKVGDSLRENLATVQLNRQITE 269

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                A   EP  L +     + I               +F  L D+     +   P+  
Sbjct: 270 MVKDMALPYEPQDLALQPWNREAI--------HQLFDDLEFRVLRDRIFTELASSEPEAE 321

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               +               IV    + +W+ +  + G  S   +            A+ 
Sbjct: 322 EGFEISGG------------IVAPGTVAEWLAEHASSGERSGLGVVGPDVVVDGDAEAVV 369

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D +                          TLT    + L  +  +    K  H  K
Sbjct: 370 IAAPDDEGGY-------------------IALETLTPHDEAALGAWLADATRPKAVHEAK 410

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK-EILKSRKSSI 528
           +    L   G  + G   D  + +Y++  G+ S ++  ++ ++L    + E      + +
Sbjct: 411 WAMHGLESRGWELGGLTSDTAIAAYLVRPGQRSFNLDDLSVRYLHRELRVESAAGDDTQL 470

Query: 529 PIDKISDSQVQEHA---IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +    D    E A   I  +  ++ L   L  +L   +   + E ++ P++ V+  ME 
Sbjct: 471 SLLDDPDDSAAEKAQQQILRARAVVDLAAALDEELEKIESKPLLEEMELPLLRVLGVMEA 530

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D D L+ + ++ S  + + E   ++  GE+ NL SPKQL  ILF KL  P   KT
Sbjct: 531 TGIAVDTDHLESLHSDFSDRIRAAEAAAFEEIGEQINLGSPKQLQVILFEKLGLPKTKKT 590

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG     A          +P ++ +LE R  +++K T  + L   +     R+H+ ++ 
Sbjct: 591 KTGYTTDAAALEALYEKEPHPFLQYLLEHRDATRLKVT-VEGLLKAVASDG-RIHSTFNQ 648

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKI 764
               TGRL+S +PNLQNIP++T+ G++IR AF++      L++ADYSQIE+RI+AH++  
Sbjct: 649 TVAATGRLSSTDPNLQNIPVRTEAGRQIRHAFVAGEGYETLMTADYSQIEMRIMAHLSSD 708

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L + F    D+H  V A+ FGV I++V+P MRR  K +++ + YG+S F LA QL+I 
Sbjct: 709 EGLIEAFNTGEDLHNFVGAKAFGVPIDEVTPDMRRRVKAMSYGLAYGLSAFGLAAQLKIS 768

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R EA D ++ YF RF G+ +Y++       +N Y ETIFGRR +  ++ S     R   E
Sbjct: 769 RDEAKDQMEAYFARFGGVRDYLQDVVTEATRNEYTETIFGRRRYLPDLTSTNRMRRESAE 828

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+NAPIQGSAADI + AMI++ K +    L ++MLLQ+HDELV EV   E     +++
Sbjct: 829 RMALNAPIQGSAADIIKVAMINLDKQIRAAGLTSRMLLQVHDELVLEVAAGERDELEKLV 888

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +M  A      L VPL+V++    +W + 
Sbjct: 889 RDTMGTAA----ELSVPLEVSVGYGRSWDDA 915


>gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
 gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
          Length = 876

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/981 (29%), Positives = 469/981 (47%), Gaps = 117/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K+++  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKIIKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++E F   II+ D+DL QL +    +Y T K     +    + + +K         
Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPKFIAEK--------- 167

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L    I ++ G+               G+  + +   + + +K     +L   E+ 
Sbjct: 168 -YNGLVPKQIIDMKGL--------------MGDTSDNIPGVAGVGEKTAI-KLLNQFESV 211

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               +                  +E+    +L   L   +   L+++   T +  +    
Sbjct: 212 EGVYE-----------------HIEEVTAKKLKEKLINSKDDALMSKDLATINVHSP--- 251

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              ++++  + K    +   ++    K  +F  L       ++ +       E  Q    
Sbjct: 252 ---IEVSLEDTKLTLQDDTTEKIELFKKLEFKQLLADIDTSSTNEEVIDKTFEIEQDFQN 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +N+ +                      A      +  +      +     T       
Sbjct: 309 VDLNDLN---------------------EAVIHFELEGTNYLKDTILKFGFYT------- 340

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                   + ++    +D             +L ++ E+++  KI ++ K   +  HR G
Sbjct: 341 ----NHQHVVINAEDVKDY-----------KHLVQWLEDKNTTKIVYDAKKTYVSAHRLG 385

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           I++     D+ML SY++D  RS  D+ S+   +     K+      K +K  IP + I  
Sbjct: 386 INIENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDNITIFGKGKKHHIPEEPI-- 443

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + EH    +  I  +   ++ +L     + + + L+ P+  ++S+ME  GI  D + L
Sbjct: 444 --LNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDL 501

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  EI K L  L  NI++ +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA 
Sbjct: 502 KEMEFEIQKKLDVLISNIHESAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAV 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G++PII +ILE+RQL+K++STY + L   I+K   R+HT ++     TGRL+S
Sbjct: 560 DVLEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKD-HRIHTRFNQTLAQTGRLSS 618

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   L   F N 
Sbjct: 619 IDPNLQNIPIRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESLKHAFING 678

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  
Sbjct: 679 HDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKQAKAFIDD 738

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FPG+ +Y+       +  GYVET+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 739 YLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNVNLRSFAERTAMNTPIQG 798

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+   + +++ K   K+LLQ+HDEL+FE+P+ E+   S+ +   ME+A + 
Sbjct: 799 SAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV- 857

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L VPLKV+      W + 
Sbjct: 858 ---LDVPLKVDSNYGATWYDA 875


>gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
          Length = 880

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/991 (30%), Positives = 482/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  R    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVR---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q   +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFSYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GD  DN   IPG                       ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALMGDKSDN---IPG----------------------VTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +  E  +G           F     +    
Sbjct: 212 LLHEFG--------------------SLEGI-YEHIDG-----------FKTSKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAVISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLSLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R ++  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
          Length = 885

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/986 (30%), Positives = 490/986 (49%), Gaps = 113/986 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAFYA    L R    +GL  NAI  F NML  +L+       
Sbjct: 1   MANK-KLLLIDGNSVAFRAFYALYRQLDRFQNPEGLHTNAIYAFKNMLDVILKQEN---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD   VTFR ++Y DYK  R K P  LL Q+P ++   +  GI + E+  +EA
Sbjct: 56  PSHVLVAFDAGKVTFRTKLYSDYKGGRQKTPGELLEQIPYIKEMLKDLGIKSYELVNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDII TY+ + E+ G+ V I+S DKDL QL S +T +Y                  +   
Sbjct: 116 DDIIGTYSKMGEEAGYQVAIVSGDKDLTQLASDSTTVY------------------VTKS 157

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            +  L+A T + +     + G+       +    G+  +     +++  K     I +Y 
Sbjct: 158 GVSELEAFTPEHMKE---VNGVTPTEFIDMKALMGDNSDNYPGVTKVGPKTASNLIQKYG 214

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
               + +                   +++    +L   L   +    + +   T D    
Sbjct: 215 SVENIYK------------------HIDEMKKSKLKENLINDKDKAFLAKTLATID---- 252

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              PV   ++  + +   +   +D     +   F     + +  NSE             
Sbjct: 253 RTSPVEFKLDELKKQETNV---VDLRKFYEQMNFRRFLAELNNSNSE------------- 296

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKIITDTMDAFHSKPIAIAISTLDQ 416
                I   S  K+      +Q + KL  + S  SF +     +   +  +  ++   D 
Sbjct: 297 -----IGEVSDKKVDYIVLDEQNLNKLPNVKSEVSFYLGMFGENYHLADFVGFSLKMGDN 351

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
              +                      N ++      L+   E++   K   ++K   + L
Sbjct: 352 VYVS----------------------NDVSLLTKQPLQTLLEDQAVNKNVFDLKRTIVGL 389

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPID 531
           HR GI       D++L SY++++  +S+D+  I Q +    L        K +K++IP +
Sbjct: 390 HRLGIKANNINYDMLLASYLVNNENNSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDE 449

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +I       H       I  L   L  +L   +   +YE ++ P+ +V+++MEITG++ D
Sbjct: 450 EI----FFNHLAGKVLAIEALKPTLLKRLTEHEQDDLYETIEMPVANVLAKMEITGLKTD 505

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L Q+  +  + L  LE +IY  +GE+FN++SPKQLG ILF KL+ P   KTKTG + 
Sbjct: 506 ASTLVQLGNDFGQRLTELEADIYLEAGERFNINSPKQLGQILFEKLELPPIKKTKTG-YS 564

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + LEQ+    +PI++ +L++RQ++KI+STY   L + I     RVHT Y    T TG
Sbjct: 565 TSVEVLEQLK-DQSPIVQKVLDYRQIAKIQSTYVKGLLDVIQPDG-RVHTRYQQTLTATG 622

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S++PNLQNIP++ + G+KIR+AFI       + S DYSQ+ELR+LAH++    + + 
Sbjct: 623 RLSSVDPNLQNIPVRLEEGKKIRKAFIPSNKDGYIFSCDYSQVELRVLAHVSGDENMQEA 682

Query: 771 FENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F+   DIH   A +IF ++  ++V+  MRRHAK +NF I+YGIS + L+  L I R +A 
Sbjct: 683 FKTGYDIHAHTAMKIFHLDSPDEVTTNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAK 742

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I  YF ++P I +Y++K  NF R+ GYVETI  RR +  +I++   ++R+  ER AIN
Sbjct: 743 EFIDNYFEQYPKIKDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAERTAIN 802

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQG AADI + AMI++ K L++  L +KML+Q+HDEL+F+VP +E+ T  +++   M+
Sbjct: 803 SPIQGGAADIIKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQ 862

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    ++L VPL  +    ++W E 
Sbjct: 863 NA----VHLDVPLVADSNWGHDWYEA 884


>gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 879

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/974 (28%), Positives = 463/974 (47%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++
Sbjct: 57  LDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    
Sbjct: 117 VRTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPHQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS
Sbjct: 177 ALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S  + LE   LI +       D   +  ++
Sbjct: 237 KKLA--------------------------SLYENLEVQDLIEK---ATYPDEEPLLKIL 267

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E   +  +   + D   K   F +                              
Sbjct: 268 EILEHYELNTLLKKLRQNPDNKDKNLGFKA------------------------------ 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T I +   + + +  L+     +F   T  +D   +K +  +    + +      
Sbjct: 298 -----TLIQDENKLFEILNTLDKESIIAFDTETTGLDTKEAKIVGFSFCMSENE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
               ++ L+ +      G+    +     ++  F   +   IGHN+KYD  ++   +G++
Sbjct: 347 --AFYVPLTHNYL--GVGEQISLQSAKKAIEVIF---NHFVIGHNLKYDFKIIQNNFGLN 399

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + + + D M+++++ +      ++  +A +  +Y         K       +   +  ++
Sbjct: 400 LPQKYADTMILAWLKNPS-LRVNMDDLALRLFNYETLHFESLVKKGENFASVELEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L    LL + +  +   I ++  ME  GI++D + L+ +  +
Sbjct: 459 AAEDAYISLRFYLYFLKNLETP-LLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKK 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               + +L E IY L  ++FNL+SPKQ+GDILF KLK PSG K KTG   +T + +    
Sbjct: 518 FENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGY--STDEKVLNAL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +P+I  IL++R+L+K+ STY + L    +  +  R+++ +    T TGRL+S +PNL
Sbjct: 576 LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  F++      IS DYSQIELR+LAH ++   L   F N  DIH  
Sbjct: 636 QNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHAR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + + + R  AK+INF +IYG+    L+  L+I    A  YI++YF  F 
Sbjct: 696 TAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +Y E  KN  +QNG++ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAAD+ 
Sbjct: 752 SIKKYFETVKNKAKQNGFITTLSGRKRYFDFENA-KPMQIAMYERESINSILQGSAADVI 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ ++K L + K   K++LQIHDEL+FEV ++      +     ME      + L+V
Sbjct: 811 KLAMLEINKELNEDK---KLILQIHDELIFEVKDDLCENFVKKTRDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQE 974
            LK +  ++ NW +
Sbjct: 864 KLKTSSSIAKNWGD 877


>gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
 gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
          Length = 920

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/979 (26%), Positives = 441/979 (45%), Gaps = 96/979 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    L L+DG S  YRAF+A P  +     G   NAI GF +ML   L++ +     +H
Sbjct: 27  EDRPRLLLLDGHSLAYRAFFALPAENFNTTTGQTTNAIYGFTSMLANTLRDEQ----PTH 82

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    T+R+E + +YKANR   P+    Q+ L+     A  I    + GFEADD+
Sbjct: 83  LAVAFDVSRKTWRSEQFTEYKANRSASPDEFKGQVELIGELLDAMNITRFAVDGFEADDV 142

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE++GF V I++ D+D  QLV+    +    K      +     V +K+G+ P
Sbjct: 143 IATLATQAEEQGFDVLIVTGDRDSFQLVTDHVTVLYPTKGVSELTRFTPGKVQEKYGLTP 202

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+   PGI                        + +K   + I ++
Sbjct: 203 SQYPDFAALRGDPSDNL---PGI----------------------PGVGEKTAAKWINQF 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                  ++LV    +V   +           G +L   L++++  + +  +    +  A
Sbjct: 238 GS----FKELVERADEVKGKV-----------GEKLRDHLESVKLNRQLTELVRDVELAA 282

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                     +      I    E                D+   ++    P     E   
Sbjct: 283 GPEGLGRTPYDREALSVILDALEFRHQN---------FRDRIMAVD----PGAAADEPAA 329

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 ++  +    +   ++  W++           + T  + +     IA+A  +   
Sbjct: 330 AEPGIAVDGVA----LGAGELAPWLESHRDAPLGLATVDTWALGSGSVSEIALATGSGP- 384

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                      F D S     D                ++  +    K+ HN K    V 
Sbjct: 385 ---------AAFFDPSQLDEADE-----------RTFAEWIADPDRPKVLHNAKGIMRVF 424

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             +G S+ G   D  L +Y++  GR S ++ +++ ++L       + +    +      D
Sbjct: 425 AEHGWSVAGVTMDTALAAYLVKPGRRSFELDALSVEYLGRELSPAVAADSGQLAFGA-DD 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
              ++  +  +  IL L      +L       +   ++ P+ +++++ME +GI  D+  L
Sbjct: 484 EAERDALMIKARTILDLGEAFGGRLKDVGAAGLLHDMELPVSELLARMERSGIAADRGWL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +++  + +  +    +  +   G +FNL SPKQL ++LF +L  P   KTKTG       
Sbjct: 544 ERMEQQFAAAVQHAVQEAHAAVGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADA 603

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   D+ +   +L  R+ ++++ST  + L   I     R+HT ++     TGRL+S
Sbjct: 604 LAWLAGQTDHELPVIMLRHREQARLRST-VEGLIKTIAP-GSRIHTTFNQTVAATGRLSS 661

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F + 
Sbjct: 662 TDPNLQNIPVRTDEGRAIRRGFVVGDGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSG 721

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VA+++F V+   V P+MRR  K +++ + YG+S F L+ QL I   EA   ++ 
Sbjct: 722 EDLHTTVASQVFSVDKSAVDPEMRRKIKAMSYGLAYGLSAFGLSQQLGITPDEARKLMEN 781

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           +F RF G+ +Y+++     R  GY ET+ GRR +  ++ S     R + ER A+NAPIQG
Sbjct: 782 FFERFGGVRDYLQRVVEEARATGYTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQG 841

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ V  +L   KL+++MLLQ+HDE+V E+   E     +++   M  A   
Sbjct: 842 TAADIVKIAMLKVDAALTGEKLSSRMLLQVHDEIVLEIAPGERERVEELVRREMTGA--- 898

Query: 955 KINLRVPLKVNIKVSNNWQ 973
              L  PL V++   ++W+
Sbjct: 899 -FGLSAPLDVSVGSGSDWE 916


>gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
          Length = 880

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/981 (30%), Positives = 485/981 (49%), Gaps = 123/981 (12%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +++  LFL+DG S  +RAFYA PLL+    G   NA+ GF  ML+ L    + +      
Sbjct: 7   KEQKTLFLLDGHSLTHRAFYALPLLTNDQ-GEYTNAVFGFVRMLFSLTDEWQPDR----M 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    TFR++ YP+YK NR K+PE L+PQ+ L++   +   IP +   G+EADD++
Sbjct: 62  IITFDKKEPTFRHQEYPEYKGNRKKMPEELVPQINLLQETIKKLEIPMVSKVGYEADDLL 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPE 177
            T +  AEK+G+ V I++ D+D +QLVS    +  T K      K D E V++K+ + PE
Sbjct: 122 GTLSKQAEKKGYKVYIVTGDRDALQLVSENVNILYTKKGISNLIKFDEEKVMEKYELTPE 181

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++  + L                          G+  + +     I +K   + + E+ 
Sbjct: 182 KLIDRKGLM-------------------------GDSSDNIPGVPGIGKKTALKLLKEFG 216

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                                                 L  ++      R    Y     
Sbjct: 217 TM---------------------------------EEILANIDQVSGKKRKENLYK---- 239

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                  +      +   I+ ++  +   +  +     DQ      +       L+R   
Sbjct: 240 -----YTEQARLSYRLGKIKRDVPIEIDFEKCRLDLYDDQKVAEQFKNLGFTSLLDRFDF 294

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI-ITDTMDAFHSKPIAIAISTLDQ 416
             +  + N  +  ++N  ++  + +K  T    +  + +     A   K   I     ++
Sbjct: 295 KEELSLENLEFE-LLNQDNLSDFKEKALTKTELAVALKLETGSKAISGKIDKILFYFKNE 353

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                +  E                      +I + +K   E++   K+  + K   L L
Sbjct: 354 TKMYIYHPEA---------------------KIAAEIKFILESKKVKKLMPDAKLAFLSL 392

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
            +  + + G   + +L  Y+L    S  ++  +    LS +  E+               
Sbjct: 393 LKNEVKVAGISFEPLLAFYLLQPSSSLPELEEVLSHELSLSFTEL--------------- 437

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            + ++     ++ + +L   L  KL    LL++Y+ ++ P+I V++QME+ G+++D+D L
Sbjct: 438 -ETEQKLAVKTSKLFELETKLITKLKENNLLNLYQEIELPLIKVLAQMELNGVKVDKDWL 496

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             +S ++ K L  + +  + L+GE+FNL+SPKQLG+ILF KL  P   +TKTG + T A 
Sbjct: 497 ANLSEKLGKRLAIITDKAHKLAGEEFNLNSPKQLGEILFEKLGLPVIKRTKTG-YSTNAS 555

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            LE++  G + II  I E+R+L+K+KSTY DSLP  IN  T ++HT ++   T TGRL+S
Sbjct: 556 VLEKLE-GKHEIIPLISEYRELAKLKSTYIDSLPPLINDETAKIHTSFNQMVTATGRLSS 614

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            EPNLQNIPI+T+ G++IR+AFI       L++ DYSQIELR+ AH++    L + F N 
Sbjct: 615 TEPNLQNIPIRTEEGREIRKAFIPSRSDMILLAVDYSQIELRVFAHLSGDQKLKEAFNNE 674

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AAE+F V  E V+P +RRHAK INF I YG+S + L+  L IP  EA  YI +
Sbjct: 675 ADIHTETAAEVFEVKAEAVTPDLRRHAKVINFGIAYGMSAYGLSQDLDIPVEEAQTYIDK 734

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+E+T   V++ GY ET+FGRR +  EINS     R+  ER AIN P+QG
Sbjct: 735 YFERFSGVKKYMEQTIEKVKKLGYAETMFGRRRYIPEINSSNYHRRSFAERTAINTPVQG 794

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI +++M+ V+  L+  +L   +LLQ+HDELVFEV   ++  A+++I   ME     
Sbjct: 795 TAADIMKKSMLDVYSCLKKSELDLNILLQVHDELVFEVNRNDLDEAAELIKEKMEN---- 850

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L VPL V++++  NW+++
Sbjct: 851 TTKLDVPLIVDLQIGENWRDK 871


>gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
 gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
          Length = 910

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/982 (27%), Positives = 451/982 (45%), Gaps = 100/982 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L L+DG S  YRAFYA P+ +     G P NA+ GF  ML  +L++ +     +H
Sbjct: 19  APRPRLLLLDGHSLAYRAFYALPVENFATTTGQPTNAVYGFTAMLINVLRDEQ----PTH 74

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+  Y +YKA R   P+    Q+ L++   +A  IP +  +G+EADD+
Sbjct: 75  VGVAFDVSRETFRSAAYTEYKATRLATPDAFKGQVELIQDVLRALRIPVVTAEGYEADDV 134

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           IAT    A   GF V I + D+D  QLVS    +    K      ++    V +++G+ P
Sbjct: 135 IATLADQAAAAGFDVLICTGDRDTFQLVSDRVTVLYPRKGVSDLARMTPAAVEERYGLRP 194

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+     AL                          G+  + L     I +K   + I ++
Sbjct: 195 EQYPDFAALR-------------------------GDPSDNLPGIPGIGEKTAAKLIRDF 229

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                  ++LV    +VP                 L + L+  + T+L+  V      D 
Sbjct: 230 GSL----QELVARIDEVPG-------KTGAVLRDHLATVLRNRQLTELVRNVPLAVRLDD 278

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             ++    D        +               +F  L ++     +  TP+      + 
Sbjct: 279 LRLQAWDRDAVHQVFDAL---------------EFRVLRERLYATLTPPTPEAEAGFAVT 323

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                       TK+++   + +W+         +                 +    +  
Sbjct: 324 ------------TKVLHPGGVAEWLAAHVAGDRRA----------------GV---WVQG 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +      V T     +   +        LT++    L  +  +    K+ H+ K   L L
Sbjct: 353 QWGRGTGVVTGLAIAAWDGAAAWLDPVQLTEDDDRALAAWLADAARPKVLHDAKGPILAL 412

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS 534
              G ++RG   D  L +Y++  G+ S D+A +A ++L    R E   +    +  +   
Sbjct: 413 AARGWTLRGLASDTALAAYLVLPGQRSFDLADLAVRYLRRELRAEAGSAGDGQLSFEMAG 472

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D      A  ++  +L L  +L  ++       +   ++ P+IDV++ ME  GI +D D 
Sbjct: 473 DEATAAAAGVHARAVLDLAEVLDAEVAARGGARLLRDVELPLIDVLAAMERAGIAVDVDT 532

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  +SAE++ ++ + E+  Y + G +FNL SPKQL  ILF +L+ P   + KTG      
Sbjct: 533 LVDLSAELAAHVKATEQAAYQVVGREFNLGSPKQLQQILFEELRLPKTKRIKTGYTTDAE 592

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                +    +P+++++L  R +S++K+T  DSL   ++    R+HT ++     TGRL+
Sbjct: 593 ALQNLLAQTGHPLLEHLLRHRDVSRLKAT-VDSLIPMVDAEG-RIHTTFNQMVAATGRLS 650

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+T  G++IR+AF+     + L++ADYSQIE+RI+AH+++   L + F +
Sbjct: 651 SQDPNLQNIPIRTAEGRRIRQAFVVGKGYEALLTADYSQIEMRIMAHLSQDQALIEAFRS 710

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D H   AA +FGV  E+V  +MRR  K +N+ + YG+S + L+ QL I   EA   ++
Sbjct: 711 GFDFHAATAASVFGVRPEQVDAEMRRRVKAMNYGLAYGLSAYGLSQQLGITPDEARVLME 770

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +Y+       R++GY ET+ GRR +  ++ S     R + ER A+NAPIQ
Sbjct: 771 EYFRRFGGVRDYLRTVVERARRDGYTETLLGRRRYLPDLTSDNRQRREMAERMALNAPIQ 830

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AM+ V ++L      +++LLQ+HDELV EV   E     +I+   M  A  
Sbjct: 831 GSAADIIKVAMLGVDRALRAAGAKSRLLLQVHDELVLEVAPGERADVEEIVRREMGHA-- 888

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
               L VPL+V++ V   W E 
Sbjct: 889 --YELSVPLEVSVGVGRTWDEA 908


>gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
 gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/981 (29%), Positives = 460/981 (46%), Gaps = 117/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+++  +     SHF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIMREEQ----PSHFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R   P  L  Q P +R     + I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQSTPPELSEQFPYIRQLLDTYHIKHYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A  +GF   I++ D+DL QL +    +Y T K     +    E + +K+        
Sbjct: 117 SKEANDQGFETIIVTGDRDLTQLATDNVTIYYTKKGVTDVDHYTPEFIAEKY-------- 168

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                            G+       +    G+  + +   + + +K   + + +     
Sbjct: 169 ----------------DGLNPNQIIDMKGLMGDASDNIPGVAGVGEKTAIKLLKQ----- 207

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                     T   +   ++ +      G +L   L+       +++   T + + + IE
Sbjct: 208 --------FNTVEGVYDNIDSVS-----GKKLKEKLENSREDAFMSKDLATINKN-SPIE 253

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             + D           + E+      K  +F  L       N+E+  +   +E     + 
Sbjct: 254 VTLQDTVLKNQDDNKDKIEL-----FKKLEFKQLLSDIDSNNTEEKHEDKVIEVSNDFNN 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                                   + +  A   I  D  +      +             
Sbjct: 309 INF---------------------KELKEAVIHIEVDGTNYLQDTILKFGFY-------- 339

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                    D   H   DS       +     L K+ ENE   KI ++ K   +V HR  
Sbjct: 340 ---------DGVDHVVIDSDQLKEYPE-----LIKWLENETTEKIVYDAKKTYVVAHRLD 385

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           I ++    D+ML SY++D  R+  D+ S+   +     ++      K +K  +P D I  
Sbjct: 386 IDIKNIVFDVMLASYIIDPSRTIDDVNSVVSNYNQNFVQDDISIYGKGKKRHVPEDTI-- 443

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + +H    +  I      +  +L   + + +   L+ P+  ++S+ME TGI  D + L
Sbjct: 444 --LNKHIASITEAIYACKREMVAELESHQQIDLLLNLELPLARILSEMEETGIYTDINDL 501

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +Q+ +EI   L  L  NI++ +GE+FN++SPKQLG +LF  L+ P   KTKTG   +TA 
Sbjct: 502 RQMQSEIQGKLDLLISNIHEAAGEEFNINSPKQLGVVLFETLELPVIKKTKTGY--STAV 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G +PII  ILE+RQLSK++STY + L   I+K   R+HT ++     TGRL+S
Sbjct: 560 DVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISKDN-RIHTRFNQTLAQTGRLSS 618

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIP++ + G+KIR+AF        ++SADYSQIELR+LAHI +   + + F N 
Sbjct: 619 VDPNLQNIPVRLEEGRKIRKAFKPTSNDSVILSADYSQIELRVLAHITQDESMKEAFINE 678

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H   A ++F V   +V+  MRR AK +NF I+YGIS + L+  L I R +A  +I  
Sbjct: 679 KDVHTATAMKVFDVEANEVNALMRRQAKAVNFGIVYGISDYGLSQSLNITRKKAKAFIDD 738

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FPG+ +Y+       + +GYVET+  RR +  +INS   ++R   ER A+N PIQG
Sbjct: 739 YLASFPGVKQYMSDIVKDAKADGYVETLLHRRRYIPDINSRNFNLRGFAERTAMNTPIQG 798

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+   + ++      ++LLQ+HDEL+FEVP  E+   S  +   ME A   
Sbjct: 799 SAADIIKLAMVEFDRQIKQTSYHAQLLLQVHDELIFEVPANEVEDFSLFVEEIMEHA--- 855

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L VPLKV+    + W + 
Sbjct: 856 -LQLDVPLKVDSNYGSTWYDA 875


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/973 (28%), Positives = 470/973 (48%), Gaps = 102/973 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R FYA   L     G P N I+GF N ++ L    + E  +      
Sbjct: 2   KTLTIIDTFGFFFRLFYALKGLKNSK-GEPSNMISGFANFIYSL----KNEHPSDMIIFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  +   +G+EADDIIA+ 
Sbjct: 57  LDSKGKTFRSEIDPNYKINRTPPPPDLLAQIPICIQMIEKMGFSSFSCEGYEADDIIASL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               E +   + II+ DKDL QL+      +Y  + +   +    ++K+G+ P ++    
Sbjct: 117 VKECENKDIFIRIITQDKDLYQLIKDDKVSIYSPISKNDYNEAGCLEKYGVKPSQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+ ++E I  N + ++ ++ R  +LE  E A LS
Sbjct: 177 ALCGDSSDNIPGVKGIGAKGAKNLLDEFESIEGIYENLTLVRNERSRNLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S  + L+   ++       +C+    EP++
Sbjct: 237 KKLA--------------------------SLYENLDVKNML------LNCEYPKDEPLL 264

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             ++  E+  +    +  R       +    + +                          
Sbjct: 265 KIMDVLEHYELNALLKKLRTNPTNKDKNLGFNAR-------------------------- 298

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                  I++ K++   ++K++     +F   T  +D   +K +  +  + + +      
Sbjct: 299 ------LILDEKELFDILEKIDDQSIVAFDTETTGLDTKEAKIVGFSFCSHESE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG--I 481
               ++ L+         K    +     ++K +++     IGHN+KYD  ++      +
Sbjct: 347 --AFYVPLAHDYLGVC--KQISMQAAKKGIEKIYQS---TVIGHNLKYDFEIIKNNFNLL 399

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
             + + D M+++++ +      ++  +A++   Y         K       +   +  ++
Sbjct: 400 PPKNYADTMILAWLKEPS-LRVNMDVLAKRIFDYETLHFEDLVKKGESFAGVDVEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L    LL + ++ +   I V+  ME  GI++D   L+ +   
Sbjct: 459 AAEDAYITLRFYLYFLKNLEK-SLLELAQKSEFEFIKVLIMMENNGIKLDIQKLESLMQN 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            ++++  L E IYDL+GEKFN++SPKQ+GDILF KLK PSG K+KTG   +T + +    
Sbjct: 518 FNQDIKILSEKIYDLAGEKFNINSPKQVGDILFEKLKLPSGKKSKTGY--STDEKVLNNL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR-TQRVHTFYSLASTMTGRLASLEPNL 720
             ++ IIK IL +R+L+K+  TY + L     K    R+++ +    T TGRL+S +PNL
Sbjct: 576 IDEHLIIKEILAYRELAKLVGTYCEPLLKLAKKDENSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  F++      IS DYSQIELR+LAH ++   L + F N  DIH  
Sbjct: 636 QNIPAHGQYAKDYKTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDEDIHAK 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + +   R  AK+INF +IYG+    L+  L+I    A +YI++YF  F 
Sbjct: 696 TAIMIFG----ESNYHTRSIAKSINFGLIYGMGYKTLSQNLKIEAKLAKEYIEKYFKNFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I  Y EK KN  +QNG+++T+ GR+ ++D  N+ K     + ER +IN+ +QGSAADI 
Sbjct: 752 SIKTYFEKVKNEAKQNGFIKTLLGRKRYFDFENA-KPMQIAMYERESINSTLQGSAADII 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI + K L+++K   +++LQIHDEL+FEV +E     ++     ME      + L+V
Sbjct: 811 KLAMIKIAKDLDENK---RLILQIHDELIFEVKDEFCDEFAKNASDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQ 973
            LK +  ++ NW 
Sbjct: 864 KLKTSSSIAKNWG 876


>gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/981 (29%), Positives = 469/981 (47%), Gaps = 117/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS  H G+  NA+ GF  +L K+++  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKIIKEEKPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +  A++E F   II+ D+DL QL +    +Y T K     +    + + +K         
Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPKFIAEK--------- 167

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L    I ++ G+               G+  + +   + + +K     +L   E+ 
Sbjct: 168 -YNGLVPKQIIDMKGL--------------MGDTSDNIPGVAGVGEKTAI-KLLNQFESV 211

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               +                  +E+    +L   L   +   L+++   T +  +    
Sbjct: 212 EGVYE-----------------HIEEVTAKKLKEKLINSKDDALMSKDLATINVHSP--- 251

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              ++++  + K    +   ++    K  +F  L       ++ +       E  Q    
Sbjct: 252 ---IEVSLEDTKLTLQDDTTEKIELFKKLEFKQLLADIDTSSTNEEVIDKTFEIEQDFQN 308

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +N+ +                      A      +  +      +     T       
Sbjct: 309 VDLNDLN---------------------EAVIHFELEGTNYLKDTILKFGFYT------- 340

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                   + ++    +D             +L ++ E+++  KI ++ K   +  HR G
Sbjct: 341 ----NHQHVVINAEDVKDY-----------KHLVQWLEDKNTTKIVYDAKKTYVSAHRLG 385

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISD 535
           I++     D+ML SY++D  RS  D+ S+   +     K+      K +K  IP + I  
Sbjct: 386 INIENIEFDVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDNITIFGKGKKHHIPEEPI-- 443

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             + EH    +  I  +   ++ +L     + + + L+ P+  ++S+ME  GI  D + L
Sbjct: 444 --LNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDL 501

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           K++  EI K L  L  NI++ +GE FN++SPKQLG +LF  L+ P   KTKTG   +TA 
Sbjct: 502 KEMEFEIQKKLDVLISNIHESAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGY--STAV 559

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +   G++PII +ILE+RQL+K++STY + L   I+K   R+HT ++     TGRL+S
Sbjct: 560 DVLEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKD-HRIHTRFNQTLAQTGRLSS 618

Query: 716 LEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           ++PNLQNIPI+ + G+KIR+AF        ++SADYSQIELR+LAHI +   L   F N 
Sbjct: 619 IDPNLQNIPIRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESLKHAFINR 678

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R +A  +I  
Sbjct: 679 HDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKQAKAFIDD 738

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y   FPG+ +Y+       +  GYVET+  RR +  +I S   ++R+  ER A+N PIQG
Sbjct: 739 YLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQG 798

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM+   + +++ K   K+LLQ+HDEL+FE+P+ E+   S+ +   ME+A + 
Sbjct: 799 SAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQALV- 857

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              L VPLKV+      W + 
Sbjct: 858 ---LDVPLKVDSNYGATWYDA 875


>gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469]
 gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469]
          Length = 912

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/981 (29%), Positives = 467/981 (47%), Gaps = 101/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +    + ++DG+S ++RAF+A        DG P  A+ GF NM  KL+++   +      
Sbjct: 25  KPRRTIAVIDGNSLMHRAFHAIRQPMAAPDGTPTGALFGFFNMFIKLVESFSPDG----V 80

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              FD      R ++ P YKA RP +   L  Q P+V+   +   +P  +++G+E DDI+
Sbjct: 81  ICAFDKGKPQIRIDMLPQYKAQRPPMDPALHAQFPVVKELLKTLDVPVCQLEGWEGDDIL 140

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPP 176
            T     E EG+ + + + D+D+ QL +    +  T K       +  E V   + GI P
Sbjct: 141 GTLARRGEAEGYQMLLFTGDRDMYQLSTENVKIVSTRKGVSDVSIMTPETVADLYAGITP 200

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E +     L GDS DNIPG+PGIG K AA L+ EYG+L+ +                + +
Sbjct: 201 ELVPDFYGLKGDSSDNIPGVPGIGPKKAAALIVEYGSLDEV----------------IAH 244

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+  +                             ++   L+A     L++R   T   DA
Sbjct: 245 ADEVK----------------------------GKVGENLRAHIDDALLSRKVATIRTDA 276

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                +      T +    ++       T  TS+ + ++  ++   + QT        L 
Sbjct: 277 PLDINLDDAKFPTFDPNDVVKAFSALGFTGMTSRLARMAGGSASGVTAQTAS--ATPALP 334

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S++    D+   +    + Q+W+         +     DT   F    ++  +    +
Sbjct: 335 IPSEFLQAGDASAALTAALENQEWI-------GVAEDSAADTGALFS---LSHTLWVSTE 384

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K    F+ E     L +   +++       K +L  +     +E               L
Sbjct: 385 KALLKFEGENATAAL-LRILREARVAADDVKALLHEVSPVDSSEPQK------------L 431

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
               I      D  + +Y+L+S RSS DI  + + +      E         P D+I  +
Sbjct: 432 DIETIDSDRLFDTGVAAYLLESDRSSFDINGLVELYFGSELPE---------PTDEIPAA 482

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            ++            L  +L  KL  +  L ++  L+  ++ V++ ME  G+ +D   L 
Sbjct: 483 ALRA------VAARALVPVLTKKLEDDGSLELFTSLEMQLLPVLAAMERRGLYVDPQKLA 536

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS--GAKTKTGQWKTTA 654
           + SA++ +++     +I+  +GE FNL SP QL  ILF  LK P+    KT+TG + T A
Sbjct: 537 EQSAQLGEDIAQRVASIHQTAGEDFNLDSPSQLSHILFDVLKLPTYGLKKTRTGFYSTNA 596

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L ++   +  I+ ++LE+R+ +KIKSTY D+LP+ I    +R+HT  +   T TGRL+
Sbjct: 597 KVLGEL-AQEYQIVADVLEYRERAKIKSTYLDALPSLIRGD-KRIHTTLNQTVTATGRLS 654

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP +++LG ++R AF  P     ++ DYSQIELR+LAH++    L   F + 
Sbjct: 655 SSDPNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADEHLVAAFNSG 714

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D H   AA +FGV +E+V+P +R  AK +NF I+YG   F LAT L+I R EA + I R
Sbjct: 715 ADFHAATAARVFGVPVEEVTPALRSRAKAVNFGIVYGQQAFGLATSLKISRKEAQEMIDR 774

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+  Y++ +     + GY  T++GR+ H  E N     +    ER A+N P+QG
Sbjct: 775 YFDAYPGVRAYLDDSVRTAHECGYAITMYGRKRHIREFNQSNRQLIAFGERTAMNHPMQG 834

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI+V K L D  L +K++LQIHDEL  EVPE EI T S ++  +ME     
Sbjct: 835 SAADIIKIAMINVEKRLRDEGLTSKLILQIHDELDLEVPESEIETVSTLVKETMEDV--- 891

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + LRVPL  ++   +NW E 
Sbjct: 892 -VTLRVPLIADVSYGSNWAEA 911


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/974 (28%), Positives = 467/974 (47%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA   L +   G     I+GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYALKGL-KNSQGQASGMISGFANFIYSL----KNEHKSDYIIFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++
Sbjct: 57  LDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             I + +   V II+ DKDL QL+    T +Y  + +   +    ++K+G+ P ++    
Sbjct: 117 VKICKDKDIFVRIITQDKDLYQLIKDGKTDIYSPISKNNYNEAACLEKYGVKPCQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS
Sbjct: 177 ALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERNRTLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S  + LE   LI +       D   +   +
Sbjct: 237 KKLA--------------------------SLYENLEVQNLIEK---AIYPDEEPLLKTL 267

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E   +  +   + D   K   F +                              
Sbjct: 268 EILEHYELNTLLKKLRQNPDNKDKNLGFKA------------------------------ 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T I +   + + +  L+     +F   T  +DA  +K +  +    + +      
Sbjct: 298 -----TLIQDENKLFEILNTLDKESIIAFDTETTGLDAKEAKIVGFSFCMNENE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
               ++ L+ +      G+    +     ++  F   +   IGHN+KYD  ++   + ++
Sbjct: 347 --AFYVPLTHNYL--GVGEQISLQSAKKAIELIF---NHFVIGHNLKYDFKIIQNNFNLT 399

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + + + D M+++++ +      ++  +A +  +Y         K       +   +  ++
Sbjct: 400 LPQEYADTMILAWLKNPS-LRVNMDDLALRLFNYETLHFESLVKKGENFTSVELEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L    LL + +  +   I ++  +E  GI++D + L+ +  +
Sbjct: 459 AAEDAYITLRFYLYFLKNLETP-LLELAKTCEFDFIKIIMMIEENGIKLDTNALEILMKK 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               + +L E IY L  ++FNL+SPKQ+GDILF KLK PSG K KTG   +T + +    
Sbjct: 518 FENEIKNLSEEIYILCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGY--STDEKVLNAL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +P+I  IL++R+L+K+ STY + L    +  +  R+++ +    T TGRL+S +PNL
Sbjct: 576 LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  F++      IS DYSQIELR+LAH ++   L   F N  DIH  
Sbjct: 636 QNIPAHGQYAKNYKSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHVR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + + + R  AK+INF +IYG+    L+  L+I  S A  YI++YF  F 
Sbjct: 696 TAMMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKSYIEKYFENFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +Y EK KN  +QNG++ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAAD+ 
Sbjct: 752 SIKKYFEKIKNEAKQNGFITTLSGRKRYFDFENA-KPMQIAMYERESINSILQGSAADVI 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ ++K L + K   K++LQIHDEL+FEV ++      +     ME      + L+V
Sbjct: 811 KLAMLEINKELNEDK---KLILQIHDELIFEVKDKLCENFVKKTRDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQE 974
            LK +  ++ NW +
Sbjct: 864 KLKTSSSIAKNWGD 877


>gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24]
 gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24]
          Length = 955

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/984 (26%), Positives = 451/984 (45%), Gaps = 101/984 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  L ++DG S  +RAF+A P        G   NAI GF +ML  L++  +     +H
Sbjct: 63  TDQPRLLVLDGHSMAFRAFFALPADKFSTAAGQHTNAIHGFTSMLINLIKEQK----PTH 118

Query: 61  FAVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV FD     T R   Y +YK  R + P  +  Q+ L+     A+GI  I++ G+EADD
Sbjct: 119 VAVAFDVSDETTHRKAEYSEYKGGRNETPREMSGQIDLIDKVMGAWGIKTIKMPGYEADD 178

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIP 175
           ++AT   + EK G+ V +++ D+D  QL++    +    K      ++D   + +K+ + 
Sbjct: 179 VLATLAAMGEKAGYEVLLVTGDRDAFQLITDNVFVLYPRKGVSDIPRLDAPAIQEKYFVS 238

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +   L AL G+S DN+PG+PG+G KTAA  +  YG LE +                LE
Sbjct: 239 PAQYSDLAALVGESADNLPGVPGVGPKTAAKWINLYGGLEGV----------------LE 282

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + +                              G  L   + A++  + +NR+ T  +  
Sbjct: 283 HLDKI------------------------GGKVGDSLRENVDAVKRNRRLNRLHTDLELP 318

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +      +    + +  E E     TI+T  F+                    E +
Sbjct: 319 VTLDDLADPRPDQAALEQLFDELEFK---TIRTRLFAL----------------YGAEEV 359

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
               +  ++   Y+      ++  ++                   A   +  A+A+  + 
Sbjct: 360 DLAERESLDIPDYSTPAGAAELSAFLA------------------AGAGQRSAVAVDLVP 401

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +         I  D       D +G++   + +L+    +  +    K+ H  K     
Sbjct: 402 GRIGEDAAALAIVRD-GAAVYIDLSGQDAEAENVLAA---WLRDPEAPKVMHGFKAALKA 457

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRKEILKSRKSSIPIDKI 533
           L   G+ + G  +D  +  Y++   R ++++A +AQ  L+      + K+ +  +  D  
Sbjct: 458 LSARGLELEGVVDDTSISGYLIQPDRRTYELAELAQHHLNIEISTAVAKAGQLELSFDG- 516

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            DS      +  + V+  L      +L   K   +   L+ P+  V++ ME+ GI ID  
Sbjct: 517 DDSAAAGELVHAAAVVHALSRYFEAELKERKAEELLSTLELPVSQVLADMELAGIAIDMQ 576

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            + +  A+++K + + +E  +   G + NL SPKQL  +LF +L+ P   K K+G     
Sbjct: 577 RMDEQLADLAKVIDNAQELAFAAIGHEVNLGSPKQLQTVLFDELQLPKTKKIKSGYTTDA 636

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A     +    +  +  ++  R+ SK++    +SL   + +   R+HT Y+     TGR+
Sbjct: 637 ASLKNLLEKTGHEFLVQLMAHRESSKLR-QMLESLKKSVAEDG-RIHTTYAQNVAATGRI 694

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIPI+++ G+++R  F+       L+SADYSQIE+RI+AH++    L Q + 
Sbjct: 695 SSNNPNLQNIPIRSEEGRRVRGIFVVSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYR 754

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D+HR V + IF V  ++V+  MR   K +++ + YG++ F L+ QL I   EA   +
Sbjct: 755 DGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLM 814

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           K YF RF  + +Y+    +  R +G+  TI GRR +  ++ S    +R   ER A+N+PI
Sbjct: 815 KEYFDRFGAVRDYLRGVVDQARIDGFTATIEGRRRYLPDLTSTDRQLRENAERIALNSPI 874

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI +RAM+ VH  L+   L ++MLLQ+HDELV EV   E     +++   M  A 
Sbjct: 875 QGSAADIIKRAMLGVHAELKAQGLKSRMLLQVHDELVLEVAAGEREAVEKLVTEQMGSAA 934

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +L VPL V I V  +W +  
Sbjct: 935 ----DLSVPLDVQIGVGPSWYDAG 954


>gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2]
          Length = 888

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/979 (29%), Positives = 468/979 (47%), Gaps = 110/979 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P+ +     G   NAI GF +ML  +L++       SH AV F
Sbjct: 8   LLLIDGHSLAYRAFHALPVENFSTSTGQSTNAIYGFISMLINVLRDE----SPSHVAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR E YP+YKA R K P    PQ+ L++    A GI  +  +GFEADD +AT  
Sbjct: 64  DLGRQTFRLEEYPEYKAGRAKTPPEFHPQIDLIKDIVVAMGITVVTKEGFEADDALATMA 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +  + G  V ++S DKD  QL + +  +    +      ++    + +K+ + P     
Sbjct: 124 RMGTEAGAQVEVMSGDKDSFQLSNDSVTILYPKRGVSDLNRMTPAAIEEKYAVTPVNYRG 183

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL G+  DN+PG+PG+G KTAA  L  YG+L  +L NA  IK K              
Sbjct: 184 LAALVGEKADNLPGVPGVGDKTAAKWLAAYGDLPGVLENADAIKGKV------------- 230

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                      G +L   +  +E    +NR+      D  ++  
Sbjct: 231 ---------------------------GEKLRDHISEVERNFRLNRL-----LDDVDLGL 258

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
              D+   E          +  +     +F +L  + S I  E        E + + +  
Sbjct: 259 TYADLKWGEGD------PSELSSLFDQLEFQALGKRLSAIFGE--------EAVPEEASG 304

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT-MDAFHSKPIAIAISTLDQKDDT 420
           P    S   +    D+   ++K+      +        +     + +A++ +        
Sbjct: 305 PAREVSVETL----DVPALLEKMADSDVLALDSDARYELGHGDVRILAVSGA-------- 352

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
               E   +DL+     D           +S L     ++    I H+ K         G
Sbjct: 353 --PDEAWVVDLAEAGEAD-----------VSKLSSALRSKTL--ILHSSKTQIKAWRSLG 397

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           + +     D  L +Y+L   + S+++  IA +       +  +S    + +D  SD   Q
Sbjct: 398 LDVDDVAGDTALAAYLLVPDQRSYELQQIALERAGIELSD-AESDSGQLALDLESDQTAQ 456

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            H    +  +L++  +L  K+    +  VY  ++ P++ V+++ME+ GI +D+  L  + 
Sbjct: 457 TH-GHRAAALLEVHDILAAKIDEANMSQVYRDIELPLVPVLARMELAGIAVDEAGLSGLI 515

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E +K   +  E  Y+  G + NL SPKQL  +LF +L  P   +TKTG         E 
Sbjct: 516 DEFTKQANASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKTKRTKTGYTTDAEALAEL 575

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++P ++++L +R  +K+K T    L         R+HT Y      TGRL+SL+PN
Sbjct: 576 FIKTEHPFLQHLLAYRDSTKLKQTVVGLLKTV--AEDGRIHTTYQQTVAATGRLSSLDPN 633

Query: 720 LQNIPIKTDLGQKIRRAFISPP---TKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           LQNIP++T+ G++IR  FI+ P     +L++ADYSQIE+RI+AH++    L Q F++  D
Sbjct: 634 LQNIPVRTESGRRIREIFIADPHVDDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGED 693

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H  V +++FGV I++V   MR   K +++ ++YG+S + L+ QL I   EA + +++YF
Sbjct: 694 LHSYVGSKVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYF 753

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RF  + +Y+++     R NGY ETI GRR +   ++S +  +R++ ERAA+NAPIQGSA
Sbjct: 754 ERFGAVKDYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSA 813

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V   L DHK  + +LLQ+HDE++ +V  EEI + +QI+   M  A     
Sbjct: 814 ADIMKIAMLKVSDRLGDHK--STVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSA----F 867

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L VPL VN+    +W + 
Sbjct: 868 ELDVPLDVNVGTGTSWHDA 886


>gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 883

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/989 (29%), Positives = 474/989 (47%), Gaps = 121/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  ++AFYA            GL  +AI GF  ML K+LQ  +    
Sbjct: 1   MTKK--LLLIDGNSIAFKAFYALYNSLERFTNSSGLHTSAIYGFNRMLDKVLQEEK---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +   V FD    TFR +++ DYK NR K P  L  Q P +R   +A GI + E+  +EA
Sbjct: 55  PTDILVAFDAGKTTFRTKMFSDYKGNRAKTPTELSEQFPFIRELVKARGISSYELPDYEA 114

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           DDII T    AE +G + V I++ D+DL QL S  T +  + K         ++K+    
Sbjct: 115 DDIIGTLAKEAEDKGDYQVVILTGDRDLTQLTSDKTTVQISKKGTT-----DLEKY---- 165

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE- 235
                    T   ++   G+          L    G+  +     +++  K   + + + 
Sbjct: 166 ---------TPQHVEEKLGVKPSQIIDIKGLK---GDNSDNYPGVTKVGDKTAMKLVQQF 213

Query: 236 -YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E             D      L+  +L D +                  +V  T   
Sbjct: 214 GSIENIY-------SNIDHVSGKMLKEHLLNDKDKAE-------------RGKVLATIKR 253

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           DA     V LD    E   +   T+       K+   +   D T K              
Sbjct: 254 DAPI--KVSLDDLKYEGDNLDRLTDFYERMGFKSFLSNLGVDATDK-------------- 297

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG-SASFKIITDTMDAFHSKPIAIAIST 413
                   I N  YTK+ +       + +L       SF +  D  +   +  +   +  
Sbjct: 298 ------NEIENIQYTKLTSDN-----LDQLNQFKDEVSFYLEMDDENYHTANLMGFVLGH 346

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             Q             D+S+  +                +K   E+    K   + K   
Sbjct: 347 EAQ--------WFASNDISLLNT--------------KQVKAILESSTVQKNVFDAKRTY 384

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L+R  I+++  + D++L+SY+L++  +S+D+ ++A+      +    +   K  K  I
Sbjct: 385 VGLYRSSITLQNVDFDMLLVSYLLNTTNNSNDVGTVAKLHGFANIKTDEEVYGKGAKKKI 444

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                   +  +H +  +  I QL   +   L       +Y  ++  +  V+++MEI GI
Sbjct: 445 ---DPEAPEFFDHIVHKAKAIDQLHNDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGI 501

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +++ + L+Q+ ++  + L  +E+ I+  +GE+FN+ SPKQLG ILF K++ P   KTKTG
Sbjct: 502 KVNPETLEQMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGHILFEKMRLPILKKTKTG 561

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+ +    D PI++N+L +RQ+SK++STY D L   I+K   +VHT Y    T
Sbjct: 562 Y--STSVDVLEKLAPDAPIVQNVLNYRQISKLQSTYIDGLLKVIHKNDSKVHTRYLQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++++ G+ IR+AF+      ++ S+DYSQIELR+LA I     +
Sbjct: 620 QTGRLSSVDPNLQNIPVRSEEGRLIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNM 679

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F    DIH   A  IFG+ + + V+P++RR AK +NF I+YGIS + LA    I R 
Sbjct: 680 QEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRK 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I+RYF  +PG+ +Y E    F + +GYVETI  RR +  +I+S   ++R+  ER 
Sbjct: 740 QAHQFIQRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERT 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI++ ++L+   L T+MLLQ+HDEL+FEVP +E+ T  ++I  
Sbjct: 800 AMNTPIQGSAADIIKIAMINMDEALK--PLKTRMLLQVHDELIFEVPNDEMETVEKLIPK 857

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    I L +PLKV       W E 
Sbjct: 858 VMDSA----IKLNIPLKVESHWGKTWYEA 882


>gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 883

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/989 (30%), Positives = 475/989 (48%), Gaps = 121/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  ++AFYA            GL  +AI GF  ML K+LQ  +    
Sbjct: 1   MTKK--LLLIDGNSIAFKAFYALYNSLERFTNSSGLHTSAIYGFNRMLDKVLQEEK---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +   V FD    TFR +++ DYKANR K P  L  Q P +R   +A GI + E+  +EA
Sbjct: 55  PTDILVAFDAGKTTFRTKMFSDYKANRAKTPTELSEQFPFIRELVKARGISSYELPDYEA 114

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           DDII T    AE +G + V I++ D+DL QL S  T +  + K         ++K+    
Sbjct: 115 DDIIGTLAKEAEDKGDYQVVILTGDRDLTQLTSDKTTVQISKKGTT-----DLEKY---- 165

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE- 235
                    T   ++   G+          L    G+  +     +++  K   + + + 
Sbjct: 166 ---------TPQHVEEKLGVKPSQIIDFKGLK---GDNSDNYPGVTKVGDKTAMKLVQQF 213

Query: 236 -YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E             D      L+  +L D +                  +V  T   
Sbjct: 214 GSIENIY-------SNIDHVSGKMLKEHLLNDKDKAE-------------RGKVLATIKR 253

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           DA     V LD    E   +   T+       K+   +   D T K              
Sbjct: 254 DAPI--KVSLDDLKYEGDNLDKLTDFYERMGFKSFLSNLGVDATDK-------------- 297

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG-SASFKIITDTMDAFHSKPIAIAIST 413
                   I N  YTK+ +       + +L       SF +  D  +   +  +   +  
Sbjct: 298 ------NEIENIQYTKLTSDN-----LDQLNQFKDEVSFYLEMDDENYHTANLMGFVLGH 346

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             Q             D+S+  +                +K   E+    K   + K   
Sbjct: 347 EAQ--------WFASNDISLLNT--------------KQVKAILESSTVQKNVFDAKRTY 384

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L+R  I+++  + D++L+SY+L++  +S+D+ ++A+      +    +   K  K  I
Sbjct: 385 VGLYRSSITLQNVDFDMLLVSYLLNTTNNSNDVGTVAKLHGFANIKTDEEVYGKGAKKKI 444

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                   +  +H +  +  I QL   +   L       +Y  ++  +  V+++MEI GI
Sbjct: 445 ---DPEVPEFFDHIVHKAKAIDQLHNDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGI 501

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +++ + L+Q+ ++  + L  +E+ I+  +GE+FN+ SPKQLG ILF K++ P   KTKTG
Sbjct: 502 KVNPETLEQMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGHILFEKMRLPILKKTKTG 561

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+ +    D PI++N+L +RQ+SK++STY D L   I++   +VHT Y    T
Sbjct: 562 Y--STSVDVLEKLAPDAPIVQNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++++ G+ IR+AFI      ++ S+DYSQIELR+LA I     +
Sbjct: 620 QTGRLSSVDPNLQNIPVRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNM 679

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F    DIH   A  IFG+ + + V+P++RR AK +NF I+YGIS + LA    I R 
Sbjct: 680 QEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRK 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I+RYF  +PG+ +Y E    F + +GYVETI  RR +  +I+S   ++R+  ER 
Sbjct: 740 QAHQFIQRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERT 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI++ ++L+   L T+MLLQ+HDEL+FEVP +E+ T  ++I  
Sbjct: 800 AMNTPIQGSAADIIKIAMINMDEALK--PLKTRMLLQVHDELIFEVPNDEMETVEKLIPK 857

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    I L +PLKV       W E 
Sbjct: 858 VMDSA----IRLNIPLKVESHWGKTWYEA 882


>gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4]
 gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4]
          Length = 887

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/985 (30%), Positives = 477/985 (48%), Gaps = 110/985 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLL---SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M ++  L L+DG+S  YRAF+A        +  +GL  NA+ GF NM+  +L   +    
Sbjct: 2   MSEKKKLVLIDGNSVAYRAFFALHSQLERMKNKNGLHTNALYGFHNMIDSVLTKEK---- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR+  + +YKA R K P     Q+P +R     FGI   E++ FEA
Sbjct: 58  PTHVLVAFDAGNTTFRHSFFDEYKAGRSKTPREFSEQMPYLRELLDGFGIRHYELENFEA 117

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DDII T     +   + V +IS D+DL QL      +  TVK             G+   
Sbjct: 118 DDIIGTLATKVDPTIYDVVVISGDRDLTQLAKENVRVDITVK-------------GVSE- 163

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
                  L   + ++I    GI       +    G+  + +   ++I +K          
Sbjct: 164 -------LKEYTTESIYEEMGISPLQIIDMKGLAGDASDNIPGVTKIGEKTAL------- 209

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                  KL+     V        L+ +      LI+     + T L+++   T D D+ 
Sbjct: 210 -------KLLKEYGSVEGIYENIDLLKKSKMKENLINE----KETALLSKRLATIDTDS- 257

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P+ + +      G  +E  I     +  +   S  D T++ ++EQ  QK  +     
Sbjct: 258 ---PIKISVEELSFNGPNMEKLISFYKEMDFNSHLSKLD-TAEYDAEQNSQKEAI----- 308

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    SYT +         + +     + +  +     +   S    I      Q 
Sbjct: 309 ---------SYTIVTE-------ITENMFNDNMALYVEMLGDNYHTSPVFCIGWGDDQQI 352

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                +V     D                       K + +++   K   + K   + L 
Sbjct: 353 YVAEPEVVFASDD----------------------FKNWAKDKEAQKQVFDAKRTYVALK 390

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDK 532
           R  + +   + DI+L SY+L++  +S D++ +A +   Y          K  K +IP +K
Sbjct: 391 RQNVDIASIDFDILLASYLLNTKDNSKDLSEVATEHEYYEVSSDESVYGKGAKIAIPEEK 450

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              + + +H       I  L   L   L   +   ++  ++ P+  V+++ME+TG++++ 
Sbjct: 451 ---TIIYDHIARKIKAIRILSKQLGENLEKNEQTKLFNEMELPLSMVLAEMELTGVKVND 507

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L ++  E +  L  +E+ +Y+L+GEKFNL+SPKQLG ILF K+ +P   KTKTG   +
Sbjct: 508 KRLMEMKEEFAIRLTDIEQRVYELAGEKFNLNSPKQLGVILFEKMGYPVIKKTKTGY--S 565

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+ +      PI+++IL++RQ++KI+STY + L   I+K+T ++HT Y      TGR
Sbjct: 566 TAVDVLEQLREQAPIVEHILDYRQIAKIQSTYIEGLLKVIDKKTGKIHTRYMQTIAQTGR 625

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIPI+ + G+KIR+AF+      ++ ++DYSQIELR+L H++    L + F
Sbjct: 626 LSSVDPNLQNIPIRLEEGRKIRQAFVPSHEGWEIFASDYSQIELRVLGHVSDDKLLKEAF 685

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               DIH   A ++FG+ + E+VS +MRR AK +NF I+YGIS + L+  L I R EA  
Sbjct: 686 IEGQDIHSSTAMQVFGIGSPEEVSSEMRRRAKAVNFGIVYGISDYGLSQNLGISRKEAQH 745

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I  YF ++PG+  Y+E      +  G+VET+F RR +  EINS   ++R+  ER AIN 
Sbjct: 746 FIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFQRRRYLPEINSRNFNLRSFAERTAINT 805

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI + + L++  +   MLLQ+HDEL+FE P+EEI     ++V  ME 
Sbjct: 806 PIQGSAADIIKIAMIKMDQKLKESTMKATMLLQVHDELIFEAPKEEIEQLRALVVEVMEG 865

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    + L VPLKV+     +W E 
Sbjct: 866 A----VELSVPLKVDSNSGKSWYEA 886


>gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
 gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
          Length = 895

 Score =  675 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/975 (30%), Positives = 480/975 (49%), Gaps = 90/975 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++D   F++R+++A P L + H+G P   + GF     KL+    ++    +     
Sbjct: 3   TLTIIDTFGFLFRSYFALPPL-KNHEGFPTGLLTGFA----KLIMQLHRDYPKDYLVFAL 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR +I P YKANRP++P+ L  QL +     +  G   I I+G+EADD+IA+  
Sbjct: 58  DSKGENFRKQIDPLYKANRPEMPQDLKLQLEVAIKWVEDMGFKNISIEGYEADDVIASIN 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A +    V IIS DKDL QL+   T L++  K+E+I  E  I+K+G+ P + V  Q++
Sbjct: 118 KQANQLKVNVRIISHDKDLYQLIDRDTFLFNPSKKEEIREEECIEKYGVSPSQFVDYQSI 177

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GDS+DN+PG+ G+G K AA LL  Y  L+ I  N  +I QK+ RE +L   E A  SR+
Sbjct: 178 VGDSVDNVPGVKGVGAKGAASLLGAYQTLDGIYENIEKIPQKRIRELLLASKEDAYRSRE 237

Query: 246 LVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           LV LR D+     L    + +DC    ++  LK  +   ++ ++          ++   +
Sbjct: 238 LVRLRDDLLEDFDLSKCEMPQDCPLLNILDSLKHYDLNSILKKLHKNPITKKKIVQKQSM 297

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
             NT E + I                                                  
Sbjct: 298 QENTQEKQFIYKS----------------------------------------------- 310

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                 I   + +++ +         SF   T +++   +K +  + S  +  D     +
Sbjct: 311 ----HLINTDEKLRELLSTFTPEDIFSFDTETTSLEVRSAKIVGFSFSV-NGVDSYYVPI 365

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISM 483
              ++ +    S +        KE + Y+           IGHN+KYD  +L   +   +
Sbjct: 366 AHNYLGVEEQVSYEC------AKEFIEYIFGC-----KYVIGHNLKYDLEILKTNFDFVL 414

Query: 484 RG---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +      D ML++++L S     ++  + +K+ ++                +I      E
Sbjct: 415 QDFSKIRDSMLLAWLLQSDALC-NLDFLMKKYFNHEMIHYKDIVHKKENFSQILIQYACE 473

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E++    QL+  L+  L+ E+L+ + + ++ P I  +  ME+ GI+ID +  +++  
Sbjct: 474 YASEDAAACYQLYFKLKG-LVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQELIL 532

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  + L  + E I+ L+ ++FNL+SP+QL  ILF +L   +G KTK+G   +T++ +   
Sbjct: 533 ESRERLHQISEEIFALANKRFNLNSPQQLATILFEELNLQAGKKTKSG--FSTSESVLNS 590

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR-TQRVHTFYSLASTMTGRLASLEPN 719
               +PII  ILE+R+  K+ STY + L  H       R++T +    T TGRL+S  PN
Sbjct: 591 LYDTHPIIPKILEYREFFKLYSTYIEPLSEHAKADLQHRIYTSFMQTGTSTGRLSSKNPN 650

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP+KT  G++IRR FI+     L+S DYSQIELR+LAH ++   + + F    DIH 
Sbjct: 651 LQNIPVKTAQGRRIRRGFIAKENHLLVSLDYSQIELRLLAHFSEDEAMIEAFLKDADIHL 710

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A +IFG   E ++ + R  AK+INF +IYG+ P +L+  L+I   EA  YI+ YF  F
Sbjct: 711 ETAKKIFG---EDMAQEKRAIAKSINFGLIYGMGPKKLSETLKITFQEAKTYIQNYFTSF 767

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + E+++  + F+ +NGY +T+ GR   +D     +   +    R  INA  QGSAADI
Sbjct: 768 PTVKEFLKNQEEFILENGYSKTLLGRMRKFDFEGVQEYQ-KAAFLREGINAIFQGSAADI 826

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM ++ K+     L +K+LLQ+HDEL+FE P+E     S+ I   ME        L+
Sbjct: 827 IKMAMNAITKA----NLESKLLLQVHDELIFEAPKEIAKKESEEIAKIMENIT----TLK 878

Query: 960 VPLKVNIKVSNNWQE 974
           VPLK  I +  NW E
Sbjct: 879 VPLKCTISIGENWGE 893


>gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131]
 gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131]
          Length = 880

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/991 (30%), Positives = 482/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GD  DN   IPG                       ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALMGDKSDN---IPG----------------------VTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +  E  +G           F     +    
Sbjct: 212 LLHEFG--------------------SLEGI-YEHIDG-----------FKASKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAAISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYVS--------TDLSLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIEVVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGTKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      K LLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKCLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 883

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/989 (29%), Positives = 474/989 (47%), Gaps = 121/989 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  ++AFYA            GL  +AI GF  ML K+LQ  +    
Sbjct: 1   MTKK--LLLIDGNSIAFKAFYALYNSLERFTNSSGLHTSAIYGFNRMLDKVLQEEK---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +   V FD    TFR +++ DYK NR K P  L  Q P +R   +A GI + E+  +EA
Sbjct: 55  PTDILVAFDAGKTTFRTKMFSDYKGNRAKTPTELSEQFPFIRELVKARGISSYELPDYEA 114

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           DDII T    AE +G + V I++ D+DL QL S  T +  + K         ++K+    
Sbjct: 115 DDIIGTLAKEAEDKGDYQVVILTGDRDLTQLTSDKTTVQISKKGTT-----DLEKY---- 165

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE- 235
                    T   ++   G+          L    G+  +     +++  K   + + + 
Sbjct: 166 ---------TPQHVEEKLGVKPSQIIDIKGLK---GDNSDNYPGVTKVGDKTAMKLVQQF 213

Query: 236 -YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
              E             D      L+  +L D +                  +V  T   
Sbjct: 214 GSIENIY-------SNIDHVSGKMLKEHLLNDKDKAE-------------RGKVLATIKR 253

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           DA     V LD    E   +   T+       K+   +   D T K              
Sbjct: 254 DAPI--KVSLDDLKYEGDNLDKLTDFYERMGFKSFLSNLGVDATDK-------------- 297

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG-SASFKIITDTMDAFHSKPIAIAIST 413
                   I N  YTK+ +       + +L       SF +  D  +   +  +   +  
Sbjct: 298 ------NEIENIQYTKLTSDN-----LDQLNQFKDEVSFYLEMDDENYHTANLMGFVLGH 346

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             Q             D+S+  +                +K   E+    K   + K   
Sbjct: 347 EAQ--------WFASNDISLLNT--------------KQVKAVLESSTVQKNVFDAKRTY 384

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           + L+R  I+++  + D++L+SY+L++  +S+D+ ++A+      +    +   K  K  I
Sbjct: 385 VGLYRSSITLQNVDFDMLLVSYLLNTTNNSNDVGTVAKLHGFANIKTDEEVYGKGAKKKI 444

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                   +  +H +  +  I QL   +   L       +Y  ++  +  V+++MEI GI
Sbjct: 445 ---DPEVPEFFDHIVHKAKAIDQLHNDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGI 501

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +++ + L+Q+ ++  + L  +E+ I+  +GE+FN+ SPKQLG ILF K++ P   KTKTG
Sbjct: 502 KVNPETLEQMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGHILFEKMRLPILKKTKTG 561

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+ +    D PI++N+L +RQ+SK++STY D L   I++   +VHT Y    T
Sbjct: 562 Y--STSVDVLEKLAPDAPIVQNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++++ G+ IR+AFI      ++ S+DYSQIELR+LA I     +
Sbjct: 620 QTGRLSSVDPNLQNIPVRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNM 679

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F    DIH   A  IFG+ + + V+P++RR AK +NF I+YGIS + LA    I R 
Sbjct: 680 QEAFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRK 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A  +I+RYF  +PG+ +Y E    F + +GYVETI  RR +  +I+S   ++R+  ER 
Sbjct: 740 QAHQFIQRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERT 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI++ ++L+   L T+MLLQ+HDEL+FEVP +E+ T  ++I  
Sbjct: 800 AMNTPIQGSAADIIKIAMINMDEALK--PLKTRMLLQVHDELIFEVPNDEMETVEKLIPK 857

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            M+ A    I L +PLKV       W E 
Sbjct: 858 VMDSA----IRLNIPLKVESHWGKTWYEA 882


>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
 gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
          Length = 922

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/982 (28%), Positives = 459/982 (46%), Gaps = 81/982 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + +FL+DGS+FIYR F+A   + R  DG P NA+     +L ++L+  R      HF  +
Sbjct: 12  DPIFLMDGSAFIYRGFFANKNMQR-SDGFPTNALVVVTRVLLRILREERPR----HFVFV 66

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D     FR++I+P YKANR  +PE L  Q+  +     A G+     +G EADD IA+ 
Sbjct: 67  KDGKGKNFRHDIFPLYKANRDAMPEDLARQIEPILRMVHALGLKLEVSEGCEADDCIASL 126

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT--VKEEKIDIEHVIKKWGIPPEKMVCL 182
                 E   V I+S DKDL Q + P   ++D    +E+ ++      + G+ P +   +
Sbjct: 127 AARFSSE-RPVVIVSGDKDLKQCLGPNVYMWDPAAREEKLLNEAEFRAESGVSPAQWPDV 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GD+ DNIPG+PGIG KTA  + +   +LE+I  +   +   K ++ +  + E   +
Sbjct: 186 QALVGDASDNIPGVPGIGPKTARQIFEICPSLEDIRDHFV-LLPPKIQDKMRGHLEDMFI 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-ANIEP 301
            R+L  L      ++ L+ + +   N P   +  +  E   L   +A+     +  +   
Sbjct: 245 WRELTTLSLKACESLTLDDMAVRPLNVPECRALAEEFELFALRREMASLLRRQSDEDAAA 304

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                  TE+     E    +    ++  F++ S   +  +  +T  ++ L         
Sbjct: 305 PPRPGARTEDAASGAEGAAAQKAGAQSVSFAAASSGGASRSQTRTGAQMSL--------- 355

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                                            + + +    S   A+            
Sbjct: 356 ------------------------------LDAVEEPLAPELSDVAALPDCAGRHVALIW 385

Query: 422 F--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR- 478
                +   + +    S+ +          +  L  + ++   L +  ++K         
Sbjct: 386 PQGPKQPPHLAVGDPLSETTEPAEYCWTGRMDMLCAWLQSARRL-VVADLKALLTAAPCW 444

Query: 479 ----YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
                G +     D+ L +Y+L+   S +    +A +W +  + E               
Sbjct: 445 RNLPLGETPPRCFDLGLAAYLLNPEESDYGWPRLAARWGAALKPEGGGP----------- 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                      + + L +   L  +L+ + L  +Y  L+ P+  V+++ME  G+ ID   
Sbjct: 494 -----------ARLALAMAEALEDRLVRDGLRELYNTLELPLTPVLAEMEGRGVAIDAAA 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
            +   +++   L  L   +Y  +G  FN+ S +QLGD+LF  L  PS  KTK GQ  T+ 
Sbjct: 543 FQAFLSDVQHELDRLTAEVYAAAGTTFNIRSAQQLGDVLFKTLNLPSPRKTKGGQASTSQ 602

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q LE++  G + ++ +IL++R+L K++STY D LP  ++ +  R+HT ++  +T TGRL+
Sbjct: 603 QTLEKL-AGRHAVVDSILQFRKLEKMRSTYLDPLPRLVDGQG-RIHTTFNQKATATGRLS 660

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIP++  LG+++R  FI+ P + L+SADYSQ+ELR+LAH+++   L   F   
Sbjct: 661 SSNPNLQNIPVRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQG 720

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AA I+ +   +VSP  RR+AKTINF +IYG+   +L  +L+I  +EA ++I R
Sbjct: 721 EDIHARTAALIYDLQAGEVSPDQRRNAKTINFGLIYGMGAQKLGQELKISTAEAKEFITR 780

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R  G+  + E  +   ++ GYV T+ GRR    +I S       +  R AIN  IQG
Sbjct: 781 YFERLTGLKAFYENVEATAKRQGYVTTLGGRRRLLPDILSANGQAFALARRQAINTVIQG 840

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AM++V    E  ++  ++LLQ+HDEL+ E PE     A   +   M      
Sbjct: 841 SAADIIKLAMLAVAHDAELRRMDARLLLQVHDELLLETPEATAEAAGARVAALMSSVAPG 900

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              L VPL V+  V ++W   +
Sbjct: 901 GETLSVPLVVDWGVGHDWGTAH 922


>gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
          Length = 879

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/976 (29%), Positives = 495/976 (50%), Gaps = 104/976 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG S + RAFY  P L+   + +  NAI GF N+++K++   + E    H  V F
Sbjct: 3   KLVLIDGHSILNRAFYGVPDLTNAQE-VHTNAIYGFLNIMFKIIDEEKPE----HLIVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++++ +YK  R  +PE L  Q+PL++   +A GI  ++ +G+EADDI+ T  
Sbjct: 58  DMSAPTFRHKMFAEYKGTRKPMPEELRQQVPLIKEVLEAMGIEIVQKEGYEADDILGTIA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +EK G  V+I+S D+D++Q+ +    +     ++ +     I+ +         ++AL
Sbjct: 118 KHSEKNGLDVSIVSGDRDILQIATEHIMIRIPKTKKGVTE---IENYN-----ACDVEAL 169

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE--YAETARLS 243
            G           +       +    G+  + +  A  I +K     I +    E A   
Sbjct: 170 YG-----------VTPAEFIDMKALMGDSSDNIPGAPGIGEKTAGAIIQKFGSVENAY-- 216

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                            H+     N  R  S     +   L  ++A T D DA    PV 
Sbjct: 217 ----------------NHIDEVTPNRAR-NSLADNYDQVLLSKKLA-TIDIDA----PVE 254

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            D+++     +  +   +     K   F SL  +     + + P+               
Sbjct: 255 YDVDSATLDNMFSDKAYEM---FKRYNFKSLLKKFDAATTTREPEIF------------- 298

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
             D +  I +  +++++    +  G    K++         +   ++ + L  +D++   
Sbjct: 299 --DKFRTIDDFGEVEEYFAGADFGGCIGLKLL--------YEDGCVSGAALAHEDNS--- 345

Query: 424 VETIFIDLSVHTSQDST-GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
               +I +    ++D    K T    +   +            G NIK     + R  + 
Sbjct: 346 --VCYIPVQGFVTEDYLKAKITDMAAVCDCIA-----------GLNIKSVLPAIDRQ-VY 391

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKSSIPIDKISDSQVQE 540
            +   D  L +Y+L+  + S+    +A+ +L+     +  L  R S      +   ++  
Sbjct: 392 PKLI-DAGLGAYLLNPLKESYSYDELARDYLNMLLPNRNELTGRMSYAEASMVKSEELAR 450

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            A   +  +   W ++  KL   ++ H+++ ++ P++ V+  ME  GI +D   LK+   
Sbjct: 451 LACMEAYCVRHAWNVISVKLDEVQMKHLFDDIEMPLVFVLYDMECEGIMVDSKGLKEYGD 510

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +++  +  LE  IY+L+G KFN++SPKQLG +LF  +K PSG KTK+G   +TA D+ + 
Sbjct: 511 KLATRITELENTIYELAGTKFNINSPKQLGTVLFEDMKLPSGKKTKSGY--STAADVLEK 568

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              + P++  ILE+RQL+K+KSTYAD L  +I +   R+H  ++   T TGR++S EPNL
Sbjct: 569 LAPEYPVVAKILEYRQLTKLKSTYADGLAVYILEDG-RIHGHFNQTITATGRISSTEPNL 627

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++ ++G++IR+ F+  P    + ADYSQIELRILAH+++   L   +  + DIH +
Sbjct: 628 QNIPVRMEIGRQIRKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAI 687

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+++F V +++V+   R +AK +NF IIYGIS F L+  L I R EA++YI++YF  +P
Sbjct: 688 TASQVFHVPLDEVTRTQRSNAKAVNFGIIYGISSFGLSQDLSISRKEASEYIEQYFATYP 747

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I E+I+      ++NGY  T+FGRR    E+NS     R   ER A+N+PIQGSAADI 
Sbjct: 748 HIKEFIDGLVASAKKNGYSTTMFGRRRPVPELNSSNFMQRQFGERIAMNSPIQGSAADII 807

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI+V ++L+D+ L +KM+LQ+HDEL+ E  E+E+    QI++ +M  A     +LRV
Sbjct: 808 KIAMINVSRALKDNNLKSKMILQVHDELLIETYEDEVDAVRQILIDNMTNAA----SLRV 863

Query: 961 PLKVNIKVSNNWQEEN 976
           PL+V++K  ++W E +
Sbjct: 864 PLEVDVKEGHDWLEAH 879


>gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 874

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/975 (30%), Positives = 453/975 (46%), Gaps = 117/975 (12%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DGSS  +RAFYA   L     G+  NA+ GF  ML KLL    KE   +   + FD  
Sbjct: 8   VIDGSSLFFRAFYAL-QLPPNARGIHTNAVHGFAMMLVKLL----KELSPTQIVIAFDKS 62

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             TFR  +YPDYK  R K PE L+ Q+PL++   +A GI  +E+  +EADDII T    A
Sbjct: 63  RTTFRTALYPDYKGTRDKTPEELIAQIPLLKELAEALGISFLELDDYEADDIIGTLAVQA 122

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184
             EG    +I+ D+D +QL+ P   +  T K     +  D     +++G PP +++ ++ 
Sbjct: 123 AAEGVETRVITGDRDALQLIRPQLTVLLTKKGISETKAYDTAIFEEEYGFPPIRLIDMKG 182

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS DNIPG+PG+G KTA  LL  Y ++EN+L +A+ +  KK             LS 
Sbjct: 183 LMGDSSDNIPGVPGVGPKTATKLLLAYESIENVLDHAAEVSGKK-------------LST 229

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L   R    ++  L  +                L +     R+        A      L
Sbjct: 230 SLAKYRAQALLSKQLATIECHVP----------ELHYDAEAFRMQPDRAALEAFCHAYEL 279

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                         E       + S F + +       +E                    
Sbjct: 280 RTVWRALSEYIGAAETPASAAAQQSLFGAPAPAADLTAAEF------------------- 320

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                           ++ L T    +   +      F  +   +A+    ++   S   
Sbjct: 321 ------------CDADMELLRTAEKVAVGAVFAGTPPFV-EVTTLALVMDGERRILSASS 367

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                                   IL+ L +            N K            +R
Sbjct: 368 PHF-------------------AAILACLAE------RSVALWNAKRYVQA------GLR 396

Query: 485 G---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           G     D+ L  Y+L    S  D+A  A  +L             +   + +S      +
Sbjct: 397 GTAQIFDLELADYLLHPEESRRDMARAAFAFLG-----------DTTSAEGLSPE---AY 442

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A+  + +  +L  ++  +L  ++L+H+Y  ++ P++ V++ ME TG+ +++  L+   A 
Sbjct: 443 AVHEALLSARLQPIMETELAAQELMHLYRTVELPLVPVLAAMEQTGVCVNRAALEHERAA 502

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            ++ + +L   I+ L+G +FN+SSPKQLG+ILF +L    G   KT    +T  +  +  
Sbjct: 503 ATERIDALAREIHTLAGTEFNISSPKQLGEILFEQLGLGDGKVKKTKTGYSTNAETLEGL 562

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              +PII  +L +R  +K++STY D +   I   T RVHT ++   T TGRL+S +PNLQ
Sbjct: 563 RDQHPIIDKVLTYRMWTKLRSTYLDGIGALIRPATGRVHTSFNQTVTATGRLSSSDPNLQ 622

Query: 722 NIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIP++T+ G+ +R  F        L+SADYSQIELRILAH++    L   F    DIH  
Sbjct: 623 NIPVRTEEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRQGQDIHAR 682

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV ++ V+P+ RR AK +NF I+YG+S F LA  L I R EA  YI RYF R+ 
Sbjct: 683 TAAEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYH 742

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  +++K       NGYV T++GRR     + S     R+  ER A+N PIQG+AAD+ 
Sbjct: 743 GVRTFLDKIVADAHANGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLI 802

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+  + +L+   + +++LLQ+HDELV EV  EE  T ++++  +M  A      L V
Sbjct: 803 KIAMVRAYDALQAAGVKSRILLQVHDELVLEVTTEETETVTELLRTAMSGAA----ELAV 858

Query: 961 PLKVNIKVSNNWQEE 975
           PL V++    NW E 
Sbjct: 859 PLAVDVHSGKNWAEA 873


>gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
 gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
          Length = 909

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/982 (30%), Positives = 483/982 (49%), Gaps = 102/982 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++  L L+DG+S I RAF+A P +    DGL  NAI GF  M++K++   R     +H +
Sbjct: 18  RDKVLLLIDGNSIINRAFFALPPMDN-GDGLHTNAIYGFLTMMFKMIDLYR----PTHIS 72

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD  A TFR + Y  YKA R K+   L  QL  ++       +   EI G+EADDI+ 
Sbjct: 73  VAFDVKAPTFRYKSYESYKAGRKKMMPELASQLGPMKEVLDVLNVDRKEIAGYEADDILG 132

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T +  AEK G+ V +++ D+D +QL S  T +  T K     E+ + E V +++ +    
Sbjct: 133 TVSLDAEKAGYKVYVVTGDRDAIQLASDMTTVLITKKGVGEVEEYNREGVYERYQLS--- 189

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                                       L    G+  + +     I +K   + +LEY  
Sbjct: 190 ----------------------PDQFIDLKGLMGDKSDNIPGIPGIGEKTGIKLLLEYGS 227

Query: 239 T-ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
               LS                        N  +L    K      + +   +       
Sbjct: 228 VEGVLS------------------------NVDKLKGAQKKKVEENMESARMSKDLATIM 263

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P+  D+ +           I++   +K +   S     S I  ++    L       
Sbjct: 264 RDVPIDFDLESMVFGDFETSRVIEKFQELKFNSLISKVSDLSGIEDKEREIDLIR----- 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                         ++  +I  ++ +++       K I  + +      I++ ++T D+ 
Sbjct: 319 --------------LDQDNIADFIARVKEGSELYIKTIARSGNILEKNIISMYLATSDES 364

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           D           D       D     ++ KEI+       E+E   KIG NIK D + L 
Sbjct: 365 DKA---------DPYKIYYMDKELAESMPKEIVD----LIEDEDIEKIGCNIKSDYINLR 411

Query: 478 RYGISMRGF-EDIMLMSYVLDS-GRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDK 532
            YGI +     DI +  Y++DS   +S+D   IA K++     + +++L     +   + 
Sbjct: 412 PYGIRLGKIGFDISIAEYIIDSKTSTSYDFDVIASKYIYKKMTSEEDLLGKGAKAKKYED 471

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I    + + AI   N +  +   +R  +  + +  +   ++ P+I+V+  ME  GI +D+
Sbjct: 472 IEKEDLDKFAIGIMNTLSGVVPKMRQIIKDDDMEKLLYDVEIPLIEVLGDMEYIGIHVDK 531

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L ++    +  +  LE  IYD+SGEKFN++SPKQLG ILF KL+ P   KTKTG + T
Sbjct: 532 KTLDELGVLFNDRIKYLETKIYDISGEKFNINSPKQLGLILFEKLELPVIKKTKTG-YST 590

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ LE++    +PII  I ++R + K+KSTY + + N IN    R+H+ ++ A   TGR
Sbjct: 591 NAEVLEKLR-DKHPIIDMITDYRTVVKLKSTYVEGINNLINPLDGRIHSSFNQAIATTGR 649

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++S +PN+QNIP++TDLG+++RR F++    KL+ ADYSQ+ELR+LA ++    + + F+
Sbjct: 650 ISSTDPNMQNIPVRTDLGRQLRRVFVAGQGSKLVDADYSQVELRVLADMSGDEDMIEAFD 709

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             +DIHR  A+++FGV  ++VS ++R  AK +NF IIYG S F LA  L I  ++A +YI
Sbjct: 710 RGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGIIYGKSDFGLAKDLDISIAKAKEYI 769

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RFP I  +++   +   + GY  TIFGRR +  EI S     +N   RAA+NAPI
Sbjct: 770 ENYFARFPKIKGFMDHIVSDAEEKGYSTTIFGRRRYIPEIKSSNFVEKNRGIRAAMNAPI 829

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM++VH  LE+  L + ++LQ+HDEL+ E P EE+     ++   ME A 
Sbjct: 830 QGSAADIIKIAMVNVHNRLEEEGLKSNLILQVHDELIVESPIEEVERVRVLLKEEMENA- 888

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              +NL+V L V++ V ++W E
Sbjct: 889 ---VNLKVNLDVDLNVGDSWYE 907


>gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309]
 gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309]
          Length = 908

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/983 (27%), Positives = 442/983 (44%), Gaps = 104/983 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + + ++DG S  +RAFYA P  S     G   NA+ GF +ML +LL+  +     +H AV
Sbjct: 10  DTVLIIDGHSMAFRAFYALPPDSFVTATGQHTNAVYGFVSMLTRLLETEQ----PTHVAV 65

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR E YP+YK  R   PE    Q+ L+R    A GI ++  +GFEADDI+AT
Sbjct: 66  AFDVSRHSFRTEEYPEYKGTRDATPEEFKGQVELIREVLDAMGIVSLSREGFEADDILAT 125

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
             Y A  +G  V ++S D+D  Q V+    +           ++  + V +K+G+PP + 
Sbjct: 126 LAYRAGNDGATVLVVSGDRDSFQTVTDNVTVLYPGTGPGDLRRMTPQAVEEKYGVPPHRY 185

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + A+ G++ DN+PG+PG+G KTAA  + +Y  L+N+L  A  I  K+           
Sbjct: 186 PEIAAIVGETSDNLPGVPGVGPKTAAQWINKYDGLDNLLARADEIGGKR----------- 234

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                                        G  L   +  +   + +NR+ T  D + +  
Sbjct: 235 -----------------------------GAALREHMDDVVRNRRLNRLLTDMDLEVSPS 265

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +      +               D    + +F  L  +  ++      +    E  + ++
Sbjct: 266 DLARRPTDVAA-----------IDRLFDSLEFGRLRQKVREVAGIGMGEGHVDEAPEAVT 314

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  I+        +               + +  +  D                   + D
Sbjct: 315 EVEISVALADASCDIAQW------ARAHSTLAVLVEGD---------------MRPTRGD 353

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +  V     +  V    + + K          L +       L I H+ K  +  L   
Sbjct: 354 VTRLVLASDKEALVIDPVELSPKQE------EALGEVLATASSL-IVHDAKGARHALSSR 406

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS--DS 536
           G ++ G   D ML +Y+    + SH +  +  + L    +E     ++   +  +    S
Sbjct: 407 GWTLGGVEFDTMLAAYLAHPDQRSHKLEDVLSRVLGVVIEEGEGDSEALFDLGDMGAGPS 466

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             Q  A + +  +  L   LR +L       +   ++ P+  ++ QME  GI  D  +L 
Sbjct: 467 AAQVRAGKLAAYLHPLASTLRSRLEESSEAALLTDMEMPLSVLLGQMEDIGIAADTSVLN 526

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +S E+ K + +  E  +  +G + NLSSPKQL ++LF     P   KTKTG        
Sbjct: 527 GLSDELGKAVDAAREGAWAAAGREVNLSSPKQLQELLFDHFGLPKTKKTKTGYTTNADAL 586

Query: 657 LEQINC------GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +            +  +  +L  R   K+K    DSL   +     R+HT +S  +  T
Sbjct: 587 ADLHAKTSDEGGAGHDFLGFLLTHRDRIKLK-QMVDSLSATVASDG-RIHTTFSQVAAAT 644

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQ 769
           GRLAS +PNLQNIP ++  G +IR AF++    + L+SADYSQIE+R++AH++    L +
Sbjct: 645 GRLASSDPNLQNIPARSADGMRIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIE 704

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F +  D+HR +A+ +FG  + +VS + R   K  ++ + YG+S + LA QL IP  EAA
Sbjct: 705 AFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYGLSSYGLAAQLGIPVPEAA 764

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
               RYF RF  + +Y+E      R +GY +T+FGRR +  ++ S     R + ERAA+N
Sbjct: 765 ALRDRYFERFGKVRDYLEGLVAQARADGYTQTMFGRRRYLPDLRSSNRQRREMAERAALN 824

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAADI + AMI+V  +L +  L +++L+QIHDEL+ EV   E      I+   M 
Sbjct: 825 APIQGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDRM- 883

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
                 + L VPL V + V  +W
Sbjct: 884 ---ATPVELSVPLDVAVGVGRSW 903


>gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 889

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/975 (29%), Positives = 478/975 (49%), Gaps = 95/975 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F++R+++A P L +  +G P   + GF     KL+    K+    +    
Sbjct: 2   KTLTIIDTFGFLFRSYFALPPL-KNREGFPTGLLTGFA----KLILQIYKDYPNDYLVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D     FR  I P YKANRP++PE L  QL +     +  G   I I G+EADD+IA+ 
Sbjct: 57  LDSKEENFRKNIDPLYKANRPEVPEDLKLQLEVAIAWVEKMGFKNISIAGYEADDVIASI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A     +V IIS DKDL QL+   T L+D  K+++I  E  ++K+G+ P + V  Q+
Sbjct: 117 NKCANALEVSVRIISHDKDLYQLIDGDTFLFDPKKKQEIREEQCMEKYGVTPAQFVDYQS 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + GDS DN+PGI GIG K A+ LL+ YG L+NI  N   I  ++ +  + E  E A  S+
Sbjct: 177 IVGDSADNVPGIKGIGAKGASNLLKTYGCLDNIYQNLDSIAPERTQTLLKEAKEDAYRSQ 236

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV LR D+     L    L+DC  PR+           L+N V +  + +  ++     
Sbjct: 237 QLVRLRDDL-----LSDFNLQDCQMPRVNP---------LLNIVDSLQEYEIYSV----- 277

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                                                  ++ P K   E+  K       
Sbjct: 278 --------------------------------------LKKLPLKNNGEKSIKKETSSHF 299

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           N +   + N   +++ + ++      SF   T  +D   +K +  + S LD  +     +
Sbjct: 300 NYNAILVENQAMLKELMAQITPDSIVSFDTETTNLDVLCAKIVGFSFS-LDGINAYYAPI 358

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISM 483
              ++ +          +    +  L ++   F     + IGHN+KYD  +LH  +  + 
Sbjct: 359 AHSYLGVP---------EQISKELALEFINSLFN--AKVVIGHNLKYDLEILHTNFNFTP 407

Query: 484 R---GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +     +D ML++++  S     ++  +  ++  +T        K      ++       
Sbjct: 408 KSYHNIKDSMLLAWLYQSDMPC-NLDDLMARYFKHTMIAFKDIIKKGENFSQLPIENAFT 466

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E++    QL+  +   L+ + L  V   ++ P I  +  ME++G +I+    K + +
Sbjct: 467 YACEDAAACYQLFFKINS-LLPKSLQEVANNVEFPFIQCLVNMELSGTKINIKYFKNLKS 525

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+++ L +L + IY L+ ++FNL+SP+QL  +LF +L   SG KTK+G    ++  +   
Sbjct: 526 EMTEKLQALSQEIYTLANKRFNLNSPQQLSIVLFEELNLQSGKKTKSGLSTNSS--VLNS 583

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-QRVHTFYSLASTMTGRLASLEPN 719
               +PII  +LE+R+L K+ STY + L    ++    +V+T +    T TGRL+S  PN
Sbjct: 584 LRDSHPIIPKVLEYRELFKLYSTYIEPLIELASQDPAHKVYTSFMQTGTSTGRLSSKNPN 643

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP+KT  G++IR  FI+     L+S DYSQIELR+LAH ++ + + + F    DIH 
Sbjct: 644 LQNIPVKTQQGRRIREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSAMIEAFHKEADIHL 703

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A +IFG   E+++ + R  AK+INF +IYG+   +L+  L+I   EA  YI+ YF  F
Sbjct: 704 ETAKKIFG---EELAQEKRSVAKSINFGLIYGMGARKLSETLQINHQEAKSYIQNYFQSF 760

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +  ++++ + F+ +NGY  T+ GR   +   N  +        R  INA  QGSAADI
Sbjct: 761 PTVKNFLKEQEEFILKNGYSLTLLGRMRKFSFENIQEFQKVAF-LREGINAIFQGSAADI 819

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI + +     KL +K+LLQ+HDEL+FE P+    T ++ I   ME        LR
Sbjct: 820 IKLAMIQITQ----EKLESKLLLQMHDELIFEAPKNIAETEAKKIAQIMESIT----TLR 871

Query: 960 VPLKVNIKVSNNWQE 974
           VPL+  + +  NW E
Sbjct: 872 VPLRCGVSLGANWGE 886


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/974 (27%), Positives = 459/974 (47%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYALKDF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++
Sbjct: 57  LDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               E     V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    
Sbjct: 117 VKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R  +LE  E A LS
Sbjct: 177 ALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLESKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S    LE   LI +       D   +  ++
Sbjct: 237 KKLA--------------------------SLYDNLEVQNLIEK---ATYPDEEPLLKIL 267

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E   +  +   + D   K   F +                              
Sbjct: 268 EILEHYELNTLLKKLRQNPDNKDKNLGFKA------------------------------ 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T + +   + + +  L+     +F   T  +D   +K +  +    + +      
Sbjct: 298 -----TLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAKIVGFSFCMNENE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
               ++ L+ +      G+    +     ++  F   +   IGHN+KYD  ++   + ++
Sbjct: 347 --AFYVPLTHNYL--GVGEQISLQSAKKAIEVIF---NHFVIGHNLKYDFKIIQNNFDLN 399

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + + + D M+++++ +      ++  +A +  +Y         K       +   +  ++
Sbjct: 400 LPQKYADTMILAWLKNPS-LRVNMDDLALRLFNYETLHFESLVKKGENFASVELEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L    LL + +  +   I ++  ME  GI++D + L+ +  +
Sbjct: 459 AAEDAYITLRFYLYFLKNLETP-LLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKK 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               + +L E IY L  ++FNL+SPKQ+GDILF KLK PS  K KTG   +T + +    
Sbjct: 518 FENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSRKKGKTGY--STDEKVLNAL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +P I  IL++R+L+K+ STY + L    +  +  R+++ +    T TGRL+S +PNL
Sbjct: 576 LDKHPAITKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  F++      IS DYSQIELR+LAH ++   L   F N  DIH  
Sbjct: 636 QNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHAR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + + + R  AK+INF +IYG+    L+  L+I    A  YI++YF  F 
Sbjct: 696 TAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +Y E  KN  +QNG++ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAAD+ 
Sbjct: 752 SIKKYFETVKNEAKQNGFITTLSGRKRYFDFENA-KPMQIAMYERESINSILQGSAADVI 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ ++K L + K   K++LQIHDEL+FEV ++      +     ME      + L+V
Sbjct: 811 KLAMLEINKELNEDK---KLILQIHDELIFEVKDDLCENFVKKTRDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQE 974
            LK +  ++ NW +
Sbjct: 864 KLKTSSSIAKNWGD 877


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/974 (28%), Positives = 462/974 (47%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA     +   G     ++GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYALKGF-KNSQGQASGMVSGFANFIYGL----KNEYKSDYIIFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P YK NR   P  LL Q+P+     +  G  ++  +G+EADDIIA++
Sbjct: 57  LDSKGKTFRSEIDPSYKQNRTPPPPELLEQIPICIEMIEKMGFISVSREGYEADDIIASF 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               E +   V II+ DKDL QL+    T +Y  + +   D    ++K+G+ P ++    
Sbjct: 117 VKTCENKDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEVACLEKYGVKPNQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPG+ GIG K A  LL E+G++E I  N + I+ ++ R  +LE  E A LS
Sbjct: 177 ALCGDNSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLIRNERSRNLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S  + LE   LI +       D   +  ++
Sbjct: 237 KKLA--------------------------SLYENLEVQDLIEK---ATYPDEEPLLKIL 267

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E   +  +   + D   K   F +                              
Sbjct: 268 EILEHYELNTLLKKLRQNPDNKDKNLGFKA------------------------------ 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T I +   + + +  L+     +F   T  +D   +K +  +    + +      
Sbjct: 298 -----TLIQDENKLFEILNTLDKESIIAFDTETTGLDTKEAKIVGFSFCMSENE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
               ++ L+ +    S  K    +     ++  F   +   IGHN+KYD  ++   +G++
Sbjct: 347 --AFYVPLTHNYLGVS--KQISLESAKKAIELIF---NHFVIGHNLKYDFKIIQNNFGLN 399

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + + + D M+++++ +      ++  +A +  +Y         K       +   +  ++
Sbjct: 400 LPQKYADTMILAWLKNPS-LRVNMDDLALRLFNYETLHFESLVKKGENFASVELEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L +  LL + +  +   I ++  ME  GI++D + L+ +  +
Sbjct: 459 AAEDAYITLRFYLYFLKNLEIP-LLELAKNCEFDFIKIIMMMEENGIKLDTNALEALMKK 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               +  L E IY L  ++FNL+SPKQ+GDILF KLK PSG K KTG   +T + +    
Sbjct: 518 FENEIKILSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGY--STDEKVLHAL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +P+I  IL++R+L+K+ STY + L    +  +  R+++ +    T TGRL+S +PNL
Sbjct: 576 LDKHPVITKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  F++       S DYSQIELR+LAH ++   L   F N  DIH  
Sbjct: 636 QNIPAHGQYAKDYKSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNAFTNDEDIHAR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + + + R  AK+INF +IYG+    L+  L+I    A  YI++YF  F 
Sbjct: 696 TAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +Y E  KN  +QNG++ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAADI 
Sbjct: 752 SIKKYFETVKNEAKQNGFITTLSGRKRYFDFENA-KPMQIAMYERESINSILQGSAADII 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ ++K L + K   K++LQIHDEL+FEV ++      +     ME      + L+V
Sbjct: 811 KLAMLEINKELNEDK---KLILQIHDELIFEVKDDLCENFVKKTRDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQE 974
            LK +  ++ NW +
Sbjct: 864 KLKTSSSIAKNWGD 877


>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
 gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
          Length = 893

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/977 (28%), Positives = 434/977 (44%), Gaps = 104/977 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAFYA    +    DG    A+ GF +ML  +L++ R     SH AV F
Sbjct: 13  LLLLDGHSLAYRAFYALRDANLMTSDGQHTEAVYGFTSMLTNVLRDER----PSHIAVCF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y  YKANR + PE    Q+ L+        IP +   G+EADD+IAT  
Sbjct: 69  DRGGPTFRHEAYDAYKANRVEAPEDFHGQMELIYELLDVLRIPRLSAPGYEADDVIATLA 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A   G  V I++ D+D +QLV     +  T +      +   E V +K+G+ P +   
Sbjct: 129 TRAAASGLDVLIVTGDRDALQLVDDKITVLMTRRGISDMTRFTPEAVEEKYGLRPAQYPD 188

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL                          G+  + L     + +K     I E+     
Sbjct: 189 FAALR-------------------------GDPSDNLPGIPGVGEKTAARWIKEFGSLDE 223

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           L R++             +   ++   G RL   L  +   +++  +      D A  + 
Sbjct: 224 LVRRV-------------DE--VKGKTGERLREHLAQVIHNRMLTELRRDVPIDVAVDDL 268

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            +   +  E   +    +I  +          L D+  K      P+      ++     
Sbjct: 269 RMGQWDREEIHNLLDTLQIRGE----------LRDRLFKTLGTAEPETAEGFDVE----- 313

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    ++   ++  W+      G A    +         +   IAI+T        
Sbjct: 314 -------VTVLEPGEVAAWL-GAMPEGRAGLAFLGTYGS-GTGRLDGIAIATSAGAAY-- 362

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                                  LT+E  + L  +  +E   K  H++K   L L  +G+
Sbjct: 363 ------------------LDPARLTQEDEAALAAWLADETKPKAAHDVKGPLLALWEHGL 404

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            +RG   D  + +Y+   G+ S  I  +  ++L+   +    +   +   D +     ++
Sbjct: 405 DLRGLTCDTAIAAYLAMPGQRSFPIEELVLRYLNRELRYETPADGQASLFDDVEAGMARD 464

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
            A+  +  + +L   L   L       +   ++ P+  V+++ME TGI  D+     + A
Sbjct: 465 LAL-KAQAVRELADALERHLAARGGTRLMTEVELPLTRVLAEMEHTGIAADRQYFATLEA 523

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E S       E  + L GE+FNL SPKQL +ILF KL  P   K KTG            
Sbjct: 524 EFSAAAKQAVEAAHALVGEQFNLGSPKQLQEILFVKLGLPKTKKIKTGYTTDADALAWLA 583

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              DN +   +L  R  +K+++T  + L   I     R+HT ++     TGRL+S +PNL
Sbjct: 584 TQTDNELPAILLRHRDQTKLRAT-VEGLIKEI-ADDGRIHTTFNQIVAATGRLSSEKPNL 641

Query: 721 QNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIPI+T  G++IR+ FI       L++ADYSQIELRI+AH++    +   F +  D H+
Sbjct: 642 QNIPIRTAEGRRIRKGFIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQ 701

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AA +FG+  ++V+P++R   K +N+ + YG+S F LA QL IP +EA    + YF  F
Sbjct: 702 ATAARVFGLPPDQVTPELRARIKAMNYGLAYGLSDFGLAGQLNIPVAEARALKEEYFEEF 761

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+ EY+ +  +  R++GY ETI GRR +  ++ S     R + ER A+NAPIQGSAADI
Sbjct: 762 AGVREYLNRVVDQARKDGYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADI 821

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ V K++    + ++MLLQ+HDELVFEV   E+     ++   M  A      LR
Sbjct: 822 IKVAMLKVRKAM--EGMRSRMLLQVHDELVFEVAPGELDDLIALVREHMGGA----YPLR 875

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+I     W++  
Sbjct: 876 VPLDVSIGTGPTWEDAG 892


>gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
          Length = 896

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/978 (31%), Positives = 491/978 (50%), Gaps = 95/978 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F++R+++A P L + H+G P   + GF     KL+    K+    +    
Sbjct: 4   KTLTIIDTFGFLFRSYFALPPL-KNHEGFPTGLLTGFA----KLIMQLHKDYPKDYLVFA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D     FR +I P YKANRP++P+ L  QL +     +  G   I I+GFEADD+IA+ 
Sbjct: 59  LDSKGENFRKQIDPLYKANRPEVPQDLKLQLEVAIRWVEDMGFKNISIEGFEADDVIASI 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K    V IIS DKDL QL+   T L++  K+E+I  E   +K+G+ P + V  Q+
Sbjct: 119 NKQVNKLDVNVRIISHDKDLYQLIDKDTFLFNPSKKEEIREEECKEKYGVYPSQFVDYQS 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + GDS DN+PG+ GIG K A  LL  +G+L++I  +   I QK+ RE +    + A  SR
Sbjct: 179 IVGDSADNVPGVKGIGAKGAVNLLNNFGSLDSIYQHLDEIPQKRTRELLSAAKDDAYRSR 238

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV LR D+     LE   L +C  P+    L+ L+  +                     
Sbjct: 239 ELVKLRDDL-----LEDFDLSECEMPQDSPLLRILDSLR--------------------- 272

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                         E D ++ +K    + +           T +K+     Q+  Q    
Sbjct: 273 --------------EYDLNSVLKKLHKNPI-----------TKKKISQIESQENEQEKKF 307

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                 I N   ++++   L      SF   T ++D   +K +  + S  +  D     +
Sbjct: 308 IYKTHLIDNDSKLKEFFSTLPKESIFSFDTETTSLDVRKAKIVGFSFSV-NGVDCYYIPI 366

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISM 483
              ++ +    S +              +++ F++++   IGHN+KYD  +L   +   +
Sbjct: 367 AHNYLGVESQVSLEC---------ARECIEQIFQSQYV--IGHNLKYDLEILKTNFDFVL 415

Query: 484 RGF---EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537
             F    D ML++++L S  +  ++  + +K+ ++     K+I+   ++      I    
Sbjct: 416 EDFSKVRDSMLLAWLLQSD-TLCNLDFLMKKYFNHEMIHYKDIVGKNEN---FSNILIQH 471

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E+A E++    QL+  LR  L+ E LL + ++++ P I  +  ME++GI+ID +    
Sbjct: 472 ACEYASEDAAACYQLYFKLRG-LMDESLLEIAQKVEFPFIQSLMNMELSGIKIDLEYFLG 530

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           ++AE  + L  + E I+ L+ ++FNL+SP+QL  ILF  LK  +  KTK+G   +T++ +
Sbjct: 531 LNAETREKLHQISEEIFVLANKRFNLNSPQQLASILFDDLKLEASKKTKSGY--STSELV 588

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR-TQRVHTFYSLASTMTGRLASL 716
                  +PII  ILE+R+  K+ STY + L  H       R++T +    T TGRL+S 
Sbjct: 589 LNSLYDSHPIIPKILEYRESFKLYSTYIEPLIEHAKSDLEHRIYTSFMQTGTSTGRLSSK 648

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIP+KT  G++IR+ FI+     LIS DYSQIELR+LAH ++   +   F    D
Sbjct: 649 NPNLQNIPVKTLEGRRIRKGFIAKENCLLISLDYSQIELRLLAHFSQDKAMIDAFLQDAD 708

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A +IFG   E+++ + R  AK+INF +IYG+ P +L+  L+I   EA  YI+ YF
Sbjct: 709 IHLETAKKIFG---EEMAQEKRAVAKSINFGLIYGMGPKKLSETLKINFQEAKTYIQNYF 765

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP I  ++++ + F+ +NGY +T+ GR   +D     +   +    R  INA  QGSA
Sbjct: 766 TSFPMIKNFLKEQEEFILENGYSKTLLGRMRKFDFEGVQEYQ-KAAFLREGINAIFQGSA 824

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM  +        L +K+LLQ+HDEL+FE P+E  +  ++ I   ME       
Sbjct: 825 ADIIKMAMNKIMH----SSLESKLLLQVHDELIFEAPKEIASKEAKKIALIMENIA---- 876

Query: 957 NLRVPLKVNIKVSNNWQE 974
            LRVPLK +I +  NW E
Sbjct: 877 TLRVPLKCSISIGENWGE 894


>gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 879

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/982 (29%), Positives = 456/982 (46%), Gaps = 123/982 (12%)

Query: 8   FLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            ++DG S  +RAFYA P    +  DG   NAI GF +ML  LLQN +     +H AV FD
Sbjct: 1   MIIDGHSLAFRAFYALPVDSFQNRDGQHTNAIHGFLSMLISLLQNEK----PTHLAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FR   YP+YK  R + P   + Q+PL+  A +A G+  +  + +EADDI+AT  +
Sbjct: 57  ISRYSFRTREYPEYKGTRGETPPEFVGQIPLLEEALKAMGVQTLSKEDYEADDILATLAH 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                GF V ++S D+D +Q+V+    L Y   +     ++ D + V +K+G+ P +   
Sbjct: 117 EGSHNGFRVLVVSGDRDAIQMVNDDVTLLYPNARGVSELKRYDRDAVFEKYGVEPHQYPD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + AL G++ DN+ G+  +G KTA   +  YG+L+ IL +A  IK     +N+ +  + A 
Sbjct: 177 VAALVGETSDNLIGVDKVGEKTAVKWINLYGSLDEILAHADEIKG-VVGQNLRDQMDRAV 235

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +RKL                                     L+  V       A +  P
Sbjct: 236 RNRKL-----------------------------------NHLLTDVELPVTVTALDRRP 260

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           +                E          QF +L  +  KI + +       +   + S  
Sbjct: 261 I---------------DEAAVREVFDRLQFKTLLQRVLKIAAAERGDDPVADAPAEASTT 305

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ---KD 418
                +    +  +++ +W+               DT  A  S P+ + ++ +D      
Sbjct: 306 VPVVRT----MVDEELAKWI---------------DTNSAHGSAPLGLTVAIVDGTVTGL 346

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +   ET F+  +                    L ++  ++   K  H+ K    +   
Sbjct: 347 GLATATETAFVPWAADRLDYV------------ALTEWLASDA-PKFMHSSKAQLKIASA 393

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G+ + G   D ML  +VL  G    ++ +    +L                ID+   +Q
Sbjct: 394 NGLDIAGIAFDTMLAGWVLKPGGKPEELEAQVYNYLGE-------------TIDQGDPNQ 440

Query: 538 VQEHAIENSNVILQLW-----LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +       S   L  +       L  +L  E  L V   ++ P++ V ++ME TGI ++Q
Sbjct: 441 LVPETEALSPATLSWYVVRVAEYLAGRLD-EGSLGVLTDIEMPLVPVFARMERTGIAVNQ 499

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            LL  +SA +++    +  N +++ G + NL SPKQL ++LFT+L+ P     KTG    
Sbjct: 500 QLLLDLSASLTETAQEVARNAFEVIGREINLGSPKQLQEVLFTQLEMPKTRANKTGYSTD 559

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A   +      +P +  +L+ R  +K+       +   I+  + RVHT Y  A + TGR
Sbjct: 560 AASLADLQEQAPHPFLNLLLQHRDATKLVQIITG-IEKAID-DSGRVHTTYEQAGSSTGR 617

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVF 771
           +AS +PNLQN+PIKT  G++IR AF +      L++ADYSQIE+RI+AH++    L Q F
Sbjct: 618 IASNDPNLQNVPIKTATGRQIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAF 677

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               D+HR V + IFGV   +V+ +MR   K +++ + YG+S F L+ QLRI  SEA   
Sbjct: 678 NEGEDLHRFVGSRIFGVEPAEVTAEMRTKVKAMSYGLAYGLSAFGLSKQLRIETSEAKAL 737

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF RF  + +Y+       R +GY  TIFGRR  + ++NS    +R+  ER A+N+P
Sbjct: 738 MTDYFARFGAVRDYLRNVVEQARTDGYTTTIFGRRRPFGDLNSKNRVLRDNAERQALNSP 797

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM+ +   +    L ++MLLQ+HDELVFE+   E+   + I+   M  A
Sbjct: 798 IQGSAADILKLAMLRIDSDMRVEGLKSRMLLQVHDELVFEIAGGELERMTTIVHERMSGA 857

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
                +L VPL V I   +NW 
Sbjct: 858 A----SLSVPLDVQIGTGHNWD 875


>gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/990 (28%), Positives = 473/990 (47%), Gaps = 113/990 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   L L+DG+S  +RAFYA    L R   H+GL  NA+  F N L +++   + +  
Sbjct: 1   MTK--TLLLIDGNSLAFRAFYAMYNQLDRMIAHNGLHTNALVAFNNFLDQIVDPMQPDL- 57

Query: 58  ASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                V +D      TFR +++  YK  R K PE    Q P +R      G+   E  G 
Sbjct: 58  ---AVVAWDAASGKETFRGDLFAGYKDGRSKAPEEFKEQFPYLREMVALHGLRNYEHPGL 114

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADDII T++ + E  G+ VTI++ D+DL+QL +    +  T K     E+    ++ +K
Sbjct: 115 EADDIIGTFSRLGEAAGYQVTIVTGDQDLIQLATDNITVNVTKKGVTGIERFTPAYIQEK 174

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +G+ P +++  +ALTGD+ D  PG+                          +I +K   +
Sbjct: 175 YGLTPLQIIEKKALTGDTSDTYPGVT-------------------------KIGEKTALK 209

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + +Y +                                 L + +  ++ +K+   +   
Sbjct: 210 LLAQYHDL------------------------------DNLYAQIDEMKPSKMKENLIN- 238

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D +AA     +  I     +  A       +   +   +  L      I+ +Q   K+ 
Sbjct: 239 -DREAAYTARQLATI-----RTDADLELPLTEIEYRGIDYDGLVPFYEDIDFKQQLAKIK 292

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             +                 V                  +  I     +      I   I
Sbjct: 293 ALKQSGQLTSQAIVPDPVVNVVPLRADNLRAVAMMGDKVALHIEMAGQNYHEDDMIGFVI 352

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                    S  +  +                         L+   EN   +K   N+K 
Sbjct: 353 GNPTVGYYGSRDLSLLQTP---------------------ELRAVIENPAIIKNVFNVKA 391

Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSS 527
             ++  R G++++G + D +L +Y+LD+  + ++++++AQ++  Y + +     K  K +
Sbjct: 392 QLVMFKRLGLALQGVDFDFLLAAYLLDTTANDNELSTLAQRFDVYVQPDEEIYGKGAKFA 451

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P D     +V  H  + ++ ++QL       L   + +H+Y  ++ P+  V++ ME  G
Sbjct: 452 VPED---VDRVLMHLGQKADALMQLETPTLAALTDHEQMHLYTDIELPLAHVLADMEYRG 508

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I I+Q  L ++  +++  + ++E+ IY  +GEKFN++SPKQLG +LF K+  P   KTKT
Sbjct: 509 IAINQARLAEIGTDLTGRIQAIEDAIYLEAGEKFNINSPKQLGVLLFEKMGLPVIKKTKT 568

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G   +TA D+ +      PI+  +L++RQL+K+KSTY D L   +N++  ++HT +    
Sbjct: 569 GY--STAVDVLEKLAHQAPIVDYVLQYRQLAKLKSTYVDGLLAVVNQKDSKIHTRFLQTL 626

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP+++D G++IR AF+   P  ++  ADYSQIELR+LAH+     
Sbjct: 627 TQTGRLSSVDPNLQNIPMRSDEGRQIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKN 686

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           + Q F N  DIH   A  +FG++ +  V+   RR AK +NF I+YGIS F LA  L I R
Sbjct: 687 MQQAFLNGEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIVYGISDFGLANNLGISR 746

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           ++A  +I  YF  FP +HE++E  K      GYVETI  RR +  +I++   ++R+  ER
Sbjct: 747 AQAKQFIDTYFKEFPKVHEWMENIKAVAHAQGYVETIAKRRRYLPDIHAKNFNLRSFAER 806

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AMI V  +L ++ +  +MLLQ+HDEL+FE P  EI   + ++ 
Sbjct: 807 TAMNSPIQGSAADIIKIAMIKVADALAENNMQARMLLQVHDELIFEAPTSEIPALTALVT 866

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             M+ A    + L VP++V       W + 
Sbjct: 867 KVMDSA----VTLDVPMQVESHYGKTWYDA 892


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/975 (28%), Positives = 455/975 (46%), Gaps = 104/975 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R FYA         G P   ++GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLFYALKNFKNSK-GEPSGMVSGFANFIYSL----KNEYKSDYIIFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  +I  + +EADDIIA+ 
Sbjct: 57  LDSKGKTFRSEIDPNYKTNRTPPPPELLAQIPICIEMIEKMGFVSISKEYYEADDIIASV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 +   V II+ DKDL QL+      +Y  + +   D    ++K+G+ P ++    
Sbjct: 117 VKSCNDKDIFVRIITQDKDLYQLIKDGKVSIYSPISKNDYDEAACLEKYGVKPSQIKDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+GN+E I  N S ++ ++ +  +LE  E A LS
Sbjct: 177 ALCGDSADNIPGVKGIGAKGAKNLLDEFGNIEEIYENLSFVRNERSKNLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +                          +L S  + L+   LI +   T +      EP++
Sbjct: 237 K--------------------------KLASLYEDLDLEDLIEKSVYTQE------EPLL 264

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             ++  E   +    +  +      +Q                                 
Sbjct: 265 RVLDYLERFELNSLLKKLKANPQNRNQNLGFKA--------------------------- 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T I++   +   ++ LE+    +F   T  ++A  +K +  +    +  +     
Sbjct: 298 -----TLILDENTLFDKLESLESESIIAFDTETTGLNAREAKIVGFSFCVSEN-EAFYVP 351

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           +   ++ +    S  +              +   +      IGHN+KYD  ++      +
Sbjct: 352 LNHTYLAVPSQISMQTAK------------RALGQIYSHFIIGHNLKYDFAIIEN-NFKL 398

Query: 484 RG---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                + D M+++++ +      ++  +A +   Y         K       +   +   
Sbjct: 399 TPPKKYADTMILAWLYNPS-LRVNMDDLALRLFDYKTLHFESVVKKGENFASVELEKACN 457

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E++ + L+ +L     L    LL +    +   I+V+ +ME +GI+++   L+ +  
Sbjct: 458 YAAEDAYITLRFYLYFLKNL-EPNLLKLGFESEFNFIEVLRKMEQSGIKLETQKLQNLMQ 516

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  K +  L E IY L  +KFNL+SPKQ+GD+LF KL  PS  KTKTG   +T + + + 
Sbjct: 517 EFEKEIKFLSEEIYTLCDDKFNLNSPKQVGDVLFEKLNLPSAKKTKTGY--STDEKVLEN 574

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPN 719
               +P++  IL +R+L+K+ STY + L    +     R+++ +    T TGRL+S EPN
Sbjct: 575 LVDKHPVVSKILAYRELAKLYSTYCEPLLKLALKDENSRIYSSFLQTGTATGRLSSKEPN 634

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP      +  +  FI+      IS DYSQIELR+LAH +K   L + F+N  DIH 
Sbjct: 635 LQNIPAHGQYAKDYKSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEAFKNDEDIHA 694

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A  IFG N    + + R  AK+INF +IYG+    L+  L+I  S A +YI++YF  F
Sbjct: 695 RTAIMIFGEN----NYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKEYIEKYFANF 750

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             I  Y E+ KN  + NGY+ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAADI
Sbjct: 751 TSIKSYFERVKNEAKINGYISTLSGRKRYFDFANA-KPMQVAMYERESINSILQGSAADI 809

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ ++K L+  K   +++LQIHDEL+FEV +E      +     ME      + L+
Sbjct: 810 IKLAMLELYKELDADK---RLILQIHDELIFEVKDELCEKFEKRARDIMEN----IVKLK 862

Query: 960 VPLKVNIKVSNNWQE 974
           V LK +  ++ NW +
Sbjct: 863 VNLKTSSSIAKNWGD 877


>gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 857

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/973 (30%), Positives = 467/973 (47%), Gaps = 119/973 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + +L ++DGSS +YRAFYA P LS    G P NA+ GF NML KL  +        + AV
Sbjct: 2   KKNLMIIDGSSLLYRAFYAMPPLS-DSQGRPTNAVYGFLNMLLKLYADLDPY----YVAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRNE+Y DYKA R   P+ L PQ  L+R      GI  +E +G+E DDII T
Sbjct: 57  AFDKDKHTFRNELYADYKATRKPAPDELRPQFALIREVLACLGIHVLETEGYEGDDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                  +  +V++I+ D+D +QLV     +Y T K                   +  + 
Sbjct: 117 VAKQVPTDNTSVSVITGDRDALQLVDDNITVYLTKKG------------------ISEML 158

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           A+T D +    G           L+   G+  + +     + +K   + I EY       
Sbjct: 159 AVTPDVMQEEYGYTPAQVIDMKALM---GDTSDNIPGVPGVGEKTALKLITEYG------ 209

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                      +    EHL   D +G +L   L   +   ++++   T +C      PV 
Sbjct: 210 ----------TVEGVYEHLD--DISGKKLREKLADNKDKAMLSKELATINCHV----PVE 253

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            D    E   +    E +     K   F +L                 L+R     ++  
Sbjct: 254 FD----EAGFLPHPREGEVRDLFKQLGFRNL-----------------LKRFAAFDRFAF 292

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
              +   +         +++L+ + +   K  T  + A +                    
Sbjct: 293 LEQAEETVT--------LKQLKELKARDVKGKTVALAAHYEN------------------ 326

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
                  +S  T     G   +  E +       E+   + +  + K         GI  
Sbjct: 327 -TPGHSKISTLTLAVEGGVYEVKSEDIGQWLTALEDSEVV-VTADGKSLYKAALCAGIGD 384

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
               D+ L +Y+LD  R+++ +  +++ +   T  E+                + Q    
Sbjct: 385 LPVYDVTLAAYLLDPTRTAYGLTYLSEVF-GRTLNEVKG--------------EAQNETA 429

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             +  +  L+  ++  L  + L  ++E ++ P+   ++ ME+ G  +++D L+++ A++S
Sbjct: 430 NEAAFVYSLYGPVQQALEEKGLSSLFETIESPLERTLAVMELNGFTVNRDRLEEMKADLS 489

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +   +LE  IYDL+GE FN++S KQLG ILF K+  P   KTKTG + T +  LE++   
Sbjct: 490 READALETEIYDLAGESFNINSTKQLGVILFEKMGLPVIKKTKTG-YSTDSSVLEEL-AE 547

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            + I+  IL++R L K+ STY D L   I+++T+RV+T ++   T TGRL+S +PNLQNI
Sbjct: 548 QSEIVPKILKFRALKKLISTYLDGLEPLIDEKTERVYTSFNQMVTATGRLSSSDPNLQNI 607

Query: 724 PIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           PI+T+ G+KIR  F+       L+S DYSQIELR+LAH+++   +   F+++ DIHR  A
Sbjct: 608 PIRTEQGRKIRSFFVPGEGYDYLVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDIHRRTA 667

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+FGV  ++V+ ++R HAK +NF IIYGIS F L+  L I R+ A +YI+ YF R+  I
Sbjct: 668 SEVFGVPFDEVTGELRSHAKAVNFGIIYGISDFGLSRNLGITRNRAKEYIESYFARYSTI 727

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
           H+Y+       R+ G   T+FGR     EI+S     R+  ER A+N PIQGSAADI + 
Sbjct: 728 HDYMNGLVEEARRTGESRTMFGRLRTLPEISSKNFMRRSFAERTAMNTPIQGSAADIIKL 787

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM +V K LE   L ++ML+Q+HDELV EVP +E  T  +++  +ME+     + L VPL
Sbjct: 788 AMNAVQKKLEALNLHSRMLVQVHDELVLEVPAQEKETIEKLLKETMEEV----VTLSVPL 843

Query: 963 KVNIKVSNNWQEE 975
             +I    NW+E 
Sbjct: 844 IADIHTGTNWEEA 856


>gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018]
 gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
 gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
          Length = 1033

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/1022 (26%), Positives = 479/1022 (46%), Gaps = 62/1022 (6%)

Query: 3    KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   L +VDG S  +RAFYA    +     G   NAI GF  ML ++++  + +      
Sbjct: 17   ENGTLLVVDGHSLAFRAFYAISADNFSTKSGFATNAIWGFSTMLSQVIEKEKPDK----L 72

Query: 62   AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            AV FD    TFRN++ P YK  R   PE LL QLP+++    A G+  I  QG+E DDII
Sbjct: 73   AVAFDVKGGTFRNKLLPQYKGTREAAPEELLAQLPVIQELLNALGVKYITKQGYEGDDII 132

Query: 122  ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            AT   +  K  +   ++S D+D  QL+     +    +     +++D + +I+K+ + P+
Sbjct: 133  ATLATMGAKAKYKTLVLSGDRDAFQLIDEYINVLYPGRHFKDLKQMDTDAIIEKYNVTPK 192

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            +   L AL G++ DNIPG+PG+G   AA  + ++G LE I+ +A ++  KK  E++ E  
Sbjct: 193  QYSDLAALRGETSDNIPGVPGVGDGYAAKWINQFGGLEGIIEHADQVTGKK-GESLRESI 251

Query: 238  ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            +  RL++K+  L  D+ + + +  L   + +   +    + LEF     R         +
Sbjct: 252  DQIRLNKKVNTLVKDLDLGVGINDLEFGNVDAASVGELFERLEFGTRSRRKILKEFTRGS 311

Query: 298  NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                                +++    +  +           KIN  +   +  L+    
Sbjct: 312  KELLEENIKMMISAGSTHAGSDVSSTESDNSDDLEDFKTIVDKINIHKIYSESDLDNWIN 371

Query: 358  LSQYPI----NNDSYTKIVNTKDIQ-----QWVQKLETIGSASFKIITDTMDAF-----H 403
            L    I    +N S   +    + +        + LE+    S  +I + ++       H
Sbjct: 372  LVSPCIEKSESNGSSELVKENTEYKSKATVDLFELLESQEKPSLNLIRNDLECAKTIKDH 431

Query: 404  SKPIAIAISTLDQKDDTSFKVETIFI-----DLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
             + +  A+   +         + + +        V++   +   +    +I   LK F +
Sbjct: 432  KELVIYALQKPNDSSQFGIYADVLVMLSQNNAAIVYSDVLNGDSSEDCNKICHKLKDFIK 491

Query: 459  NEHFLKIGHNIKYDKLVLHRYGI-----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
                  + H+ K    +L    I     S     D  L SY+++    + +I  +A+  L
Sbjct: 492  MYESSIVLHDYKKHIALLKSLKIVDNNYSFNPLLDTRLASYLIEPDFRNENIEDMAEHVL 551

Query: 514  SYTRK------EILKSRKSSIPIDKISDSQV----------QEHAIENSNVILQLWLLLR 557
            +   +      E  +     +  D  +  ++          ++  +E +  I  L     
Sbjct: 552  NIHVENEKSNEEPAQGELDFVLEDSDNPEELNQEEDKRKKQEKRILETAITIRLLAKQYA 611

Query: 558  PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
             KL   K   +   ++ P+  V+  ME  G  +D   L  +    +      ++   D++
Sbjct: 612  IKLDERKQTGLMVDVEMPVSRVLRGMEDAGAAVDMSRLVSMRDNFAAEAQFAQKMALDVA 671

Query: 618  GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP------IIKNI 671
             +  NL SPKQL  +LF  +      +TK+G + T A+ L+++    +P       +  +
Sbjct: 672  NKPINLQSPKQLQQLLFEDMGLKPTRRTKSGSYTTNAEALQELYAKIDPDEKASQFLGAL 731

Query: 672  LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
            L+ R+ +K+K     SL +       R+HT +      TGRL+S +PNLQNIP +  +G+
Sbjct: 732  LKHRETNKLK-QIVQSLIDSARYEDGRIHTTFEQTIAATGRLSSSDPNLQNIPNRNVVGR 790

Query: 732  KIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            +IR AFI      +L+S DYSQ+ELRI+AH +    L + F++ +D H+ VA+ ++ + +
Sbjct: 791  EIRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVASLVYKIPV 850

Query: 791  EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            E+VSP  R H K +++ + YG+S + LA QL I  + A    ++YF  F G+H+Y+E   
Sbjct: 851  EQVSPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPAAAEVLKEKYFDTFGGVHDYLESLV 910

Query: 851  NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
            +  R+ GY +T+FGRR ++ ++NS   + R   ERAA+NAPIQGSAADI + AMI V K 
Sbjct: 911  DKARKLGYTQTMFGRRRYFPKLNSTNRASRESAERAALNAPIQGSAADIMKLAMIQVDKD 970

Query: 911  LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
            L + K+ ++++LQIHDELV E+   E      I+ ++ME      + L VPL V+  +  
Sbjct: 971  LREAKVKSRVILQIHDELVLEIAHGEADIVENIVKNAMEH----TVELDVPLNVSTGLGA 1026

Query: 971  NW 972
            +W
Sbjct: 1027 DW 1028


>gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 880

 Score =  672 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/991 (30%), Positives = 480/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLEHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVIEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GD  DN   IPG                       ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALMGDKSDN---IPG----------------------VTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +          +   KA +  + +      
Sbjct: 212 LLHEFG--------------------SLEGIYEH-------VEGFKASKMKENL-----L 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          SK   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSKFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q  I   SY ++ +  D               F+++ D  +      I  A 
Sbjct: 291 KGLASQMPQEAIAAVSYQEVTSLSD-----DLFSDEDIFYFEVLRD--NYHREDIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+ ++                 KK FE        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLSLLST--------------DLFKKVFEKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++ +IA+ +   + +       K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-SNVEDNELTTIARLFTDISLEADDSIYGKGVKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P  ++       H      V+L     +  KL     + +Y  ++ P+ +V+++MEI 
Sbjct: 438 AVPEKEVLLG----HLARKVKVLLDSRAPMVEKLADHDQIDLYHEIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++  +L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL+ +     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLRADENAGQSWYEA 879


>gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
           Polymerase I Complexed With DTMP
 gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
           Polymerase I Complexed With Deoxynucleoside Triphosphate
           And Pyrophosphate
          Length = 605

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/619 (40%), Positives = 375/619 (60%), Gaps = 20/619 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +          
Sbjct: 2   ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV-AAYI 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L  YGI 
Sbjct: 61  PVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQV 538
           +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I+  + 
Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L  
Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + L
Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +
Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DI
Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF 
Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+AA
Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME        
Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT----R 586

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V +    NW + +
Sbjct: 587 LDVPLLVEVGSGENWDQAH 605


>gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v]
          Length = 605

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/620 (40%), Positives = 376/620 (60%), Gaps = 20/620 (3%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+ D+Y  I++ + +++W+ KLE     +F   TD++D   +  + ++ +         
Sbjct: 1   MISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV-AAY 59

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L  YGI
Sbjct: 60  IPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGI 110

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
            +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I+  +
Sbjct: 111 ELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEE 170

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L 
Sbjct: 171 AGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLH 230

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + 
Sbjct: 231 NHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEV 290

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S 
Sbjct: 291 LEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSST 349

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    D
Sbjct: 350 DPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKD 409

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF
Sbjct: 410 IHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYF 469

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+A
Sbjct: 470 ERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTA 529

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME       
Sbjct: 530 ADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLMENCT---- 585

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V +    NW + +
Sbjct: 586 RLDVPLLVEVGSGENWDQAH 605


>gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
           Manganese
 gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
           Only
 gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
           Manganese
 gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
 gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
           And Europium (Iii) Ion
 gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Short Dna Fragment Carrying 2'-0-
           Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
 gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna Tetramer Carrying
           2'-O-(3-Aminopropyl)- Rna Modification
           5'-D(Tt)-Ap(U)-D(T)-3'
 gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431]
 gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G]
 gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180]
 gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357]
 gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74]
          Length = 605

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/620 (40%), Positives = 375/620 (60%), Gaps = 20/620 (3%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +         
Sbjct: 1   MISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV-AAY 59

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L  YGI
Sbjct: 60  IPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGI 110

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
            +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I+  +
Sbjct: 111 ELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEE 170

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L 
Sbjct: 171 AGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLH 230

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + 
Sbjct: 231 NHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEV 290

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S 
Sbjct: 291 LEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSST 349

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    D
Sbjct: 350 DPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKD 409

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF
Sbjct: 410 IHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYF 469

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+A
Sbjct: 470 ERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTA 529

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME       
Sbjct: 530 ADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT---- 585

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V +    NW + +
Sbjct: 586 RLDVPLLVEVGSGENWDQAH 605


>gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
 gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
          Length = 890

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/983 (30%), Positives = 479/983 (48%), Gaps = 116/983 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 9   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 65  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDIL 124

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 125 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 184

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL                          G+  +      ++  K   + I +Y 
Sbjct: 185 QFIDVKALM-------------------------GDASDNYPGVEKVGAKTASKLINQYG 219

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
               L  K+                  +     +   +L   +   ++ +   T DC + 
Sbjct: 220 SVENLYEKI------------------DQIKASKTKEYLIRDKNNAILGKKLATIDCTSP 261

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +D+   + K  A +    R    +      LS+               L  +++
Sbjct: 262 ------VDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSE---------------LPDVEE 300

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +     +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 301 IDNKVQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 357

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + L K  E+++  K   ++K + + L 
Sbjct: 358 Y--------------------VCDDVTLLQE--APLNKILEDKNIAKQVFDLKRNYVGLQ 395

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R  I++    +DIML SY+ DS  ++ D+  +A  +  +     + I    K       +
Sbjct: 396 RLDITLSNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ---HSV 452

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++   
Sbjct: 453 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 512

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 513 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLAPAKKTKTGY--ST 570

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 571 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 629

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F+
Sbjct: 630 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 689

Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
              DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++
Sbjct: 690 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 749

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+P
Sbjct: 750 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 809

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A
Sbjct: 810 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQA 869

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 L VPL  +    +NW E
Sbjct: 870 A----QLDVPLIADANWGHNWYE 888


>gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974]
 gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2]
          Length = 877

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/990 (31%), Positives = 474/990 (47%), Gaps = 132/990 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DN   IPG                       +++ +K   + +LE
Sbjct: 178 PAQFIDLKALMGDKSDN---IPG----------------------VTKVGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVATTY 292
           Y                      LE +  E+ +G +     + L   +    +++   T 
Sbjct: 213 YG--------------------SLEGI-YENIDGMKTSKMKENLINDKEQAFLSKTLATI 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + +      G  +E        +   Q      Q   ++S    + L  
Sbjct: 252 DTKA----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAEGLDF 303

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
             + ++SQ  ++ +S                        F       +      +  A S
Sbjct: 304 TIVDQISQDMLSEES-----------------------IFHFELFGENYHTDNLVGFAWS 340

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             D+                      +T K  L ++     K F E        ++ K  
Sbjct: 341 CGDK--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKV 376

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
           K++L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +
Sbjct: 377 KVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKA 435

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP       +  EH      V+++   +L  KL     L +   +++P+  V+++MEI G
Sbjct: 436 IP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAG 491

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT
Sbjct: 492 IVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKT 551

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    
Sbjct: 552 KTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDL 610

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEH 670

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R
Sbjct: 671 LIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISR 730

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER
Sbjct: 731 KEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAER 790

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++ 
Sbjct: 791 TAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVK 850

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPL  +      W E 
Sbjct: 851 QTMEEA----IQLSVPLIADENEGATWYEA 876


>gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227]
          Length = 605

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/620 (40%), Positives = 375/620 (60%), Gaps = 20/620 (3%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +         
Sbjct: 1   MISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV-AAY 59

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   ++D     S          +  L  LK   E+E  LK+G N+KYD+ +L  YGI
Sbjct: 60  IPVAHDYLDAPDQISH---------ERALELLKPLLEDEKALKVGQNLKYDRGILANYGI 110

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
            +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I+  +
Sbjct: 111 ELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEE 170

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L 
Sbjct: 171 AGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLH 230

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + 
Sbjct: 231 NHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEV 290

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S 
Sbjct: 291 LEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSST 349

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    D
Sbjct: 350 DPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKD 409

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF
Sbjct: 410 IHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYF 469

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ER AINAP+QG+A
Sbjct: 470 ERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERTAINAPMQGTA 529

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME       
Sbjct: 530 ADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT---- 585

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V +    NW + +
Sbjct: 586 RLDVPLLVEVGSGENWDQAH 605


>gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 924

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/991 (30%), Positives = 481/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 45  MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 100

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 101 PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHYEA 160

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 161 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 220

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL                          G+  + +   ++I +K   +
Sbjct: 221 MGLTPNQFIDLKALM-------------------------GDKSDNIPGVTKIGEKTGLK 255

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +          +   KA +  + +      
Sbjct: 256 LLHEFG--------------------SLEGIYEH-------VEGFKASKMKENL-----I 283

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 284 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 334

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 335 KGLASQMPQEPVAAISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 387

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+  +                 K+ F+        ++ K 
Sbjct: 388 GHGEQIYAS--------TDLSLLAT--------------DSFKQVFQKP---IATYDFKR 422

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 423 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 481

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 482 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 537

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 538 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 597

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 598 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 656

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 657 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSQEDAVLLSSDYSQIELRVLAHISGDE 716

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++  E V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 717 HLIAAFNEGADIHTSTAMRVFGIDKAEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 776

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 777 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 836

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++  +L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 837 RTAINSPIQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIVLEVPNDELTAIKKLV 896

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL+ +     +W E 
Sbjct: 897 KDTMEAA----VDLAVPLRADENAGQSWYEA 923


>gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6]
 gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6]
          Length = 877

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/990 (31%), Positives = 472/990 (47%), Gaps = 132/990 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNI   PG+                       ++ +K   + +LE
Sbjct: 178 PAQFIDLKALMGDKSDNI---PGVT----------------------KVGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVATTY 292
           +                      LE +  E+ +G +     + L   +    +++   T 
Sbjct: 213 HG--------------------SLEGI-YENIDGMKTSKMKENLINDKEQAFLSKTLATI 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + +      G  +E        +   Q      Q   ++S    + L  
Sbjct: 252 DTKA----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAKGLDF 303

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
             + ++SQ  ++ +S                        F       +      +  A S
Sbjct: 304 TIVDQISQDMLSEES-----------------------IFHFELFGENYHTDNLVGFAWS 340

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             D+                      +T K  L ++     K F E        ++ K  
Sbjct: 341 CEDK--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKV 376

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
           K++L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +
Sbjct: 377 KVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKA 435

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP       +  EH      V+++   +L  KL     L +   +++P+  V+++MEI G
Sbjct: 436 IP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAG 491

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT
Sbjct: 492 IMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKT 551

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    
Sbjct: 552 KTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDL 610

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEH 670

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R
Sbjct: 671 LIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISR 730

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  YF RFPGI  Y+++     R   YVET+F RR    +INS   +IR   ER
Sbjct: 731 KEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGFAER 790

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++ 
Sbjct: 791 TAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVK 850

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPL  +      W E 
Sbjct: 851 QTMEEA----IQLSVPLIADENEGATWYEA 876


>gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
 gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
          Length = 880

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/991 (30%), Positives = 480/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  R    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVR---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL                          G+  + +   ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALM-------------------------GDKSDNIPGVTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +  E  +G           F     +    
Sbjct: 212 LLHEFG--------------------SLEGI-YEHIDG-----------FKASKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAAISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLSLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|332201961|gb|EGJ16030.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317]
          Length = 877

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/990 (31%), Positives = 470/990 (47%), Gaps = 132/990 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNI   PG+                       ++ +K   + +LE
Sbjct: 178 PAQFIDLKALMGDKSDNI---PGVT----------------------KVGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVATTY 292
           +                      LE +  E+ +G +     + L   +    +++   T 
Sbjct: 213 HG--------------------SLEGI-YENIDGMKTSKMKENLINDKEQAFLSKTLATI 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + +      G  +E        +   Q                     L
Sbjct: 252 DTKA----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------L 286

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           ++   +S   ++      IV+        ++      + F       +      +  A S
Sbjct: 287 KQALNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWS 340

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             D+                      +T K  L ++     K F E        ++ K  
Sbjct: 341 CGDK--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKV 376

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
           K++L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +
Sbjct: 377 KVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKA 435

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP       +  EH      V+++   +L  KL     L +   +++P+  V+++MEI G
Sbjct: 436 IP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAG 491

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT
Sbjct: 492 IMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKT 551

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +       I+K IL++RQ++KI+STY   L + I    + +HT Y    
Sbjct: 552 KTGYSTAVDVLERLAPIALIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDL 610

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEH 670

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R
Sbjct: 671 LIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISR 730

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER
Sbjct: 731 KEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAER 790

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++ 
Sbjct: 791 TAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVK 850

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPL  +      W E 
Sbjct: 851 QTMEEA----IQLSVPLIADENEGATWYEA 876


>gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 913

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/978 (26%), Positives = 434/978 (44%), Gaps = 98/978 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G   NAI GF +ML   L++       +HF
Sbjct: 23  NRPRLLLMDGHSLAYRAFFALPAENFSTASGQTTNAIYGFASMLANTLRDE----APTHF 78

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R++ YP+YKANR   P+    Q+ L+             + GFEADDII
Sbjct: 79  AVAFDVSRKTWRSKDYPEYKANRSATPDEFKGQVELIGELLDTMNAVRFAVDGFEADDII 138

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE EGF V I++ D+D  QLVS  T +    K      +   E V +K+G+ P 
Sbjct: 139 ATLATQAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVQEKYGLTPS 198

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPG+G                         +K   + I ++ 
Sbjct: 199 QYPDFAALRGDPSDNLPGIPGVG-------------------------EKTAAKWINQFG 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A    +LV    +V                 ++    +       +NR  T    D  
Sbjct: 234 SFA----ELVERADEV---------------KGKVGQSFRDHLEAVKLNRHLTELVRDVE 274

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +PV        ++          +    + +   L+        E    +  +E    
Sbjct: 275 LAKPVAGLERAPYDRSALKNFLEILEIRNPSLRERLLAVDPGATEDEAPAPEAGIELDG- 333

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        ++ T ++  W++                  +  ++P+ +A  T    
Sbjct: 334 ------------SVLATGELAPWLE------------------SHGAQPLGVATVTSWSL 363

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    +          D+T  +   +   +    +  +    K+ HN K    V  
Sbjct: 364 GTGQVSEIALAAADGKAAWFDTTRLDEADERAFAA---WIADPARPKVMHNAKDALRVFP 420

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            +G  + G   D  L +Y++  GR S  + +++ ++L           + +   D+ +++
Sbjct: 421 EHGWRVDGITMDTALAAYLVKPGRRSFALDALSVEYLHRELVPAAADGQLAFGTDEHAEA 480

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
                 +  +  +L L      +L       +   ++ P  +++++ME  GI  D+  L+
Sbjct: 481 DA---LMAQARAVLDLGDAFTARLEEVGATELLHDMELPTSELLARMERHGIAADRAHLE 537

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +    +  +    +  +   G +FNL SPKQL ++ F +L  P   KTKTG        
Sbjct: 538 SMEHLFAGAVQQAVKEAHATVGHEFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADAL 597

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  ++ +   +L  R+ ++++ST  + L   +     R+HT +S     TGRL+S 
Sbjct: 598 AWLAGQTEHELPVIMLRHREQARLRST-VEGLIKTVAADG-RIHTTFSQTVAATGRLSST 655

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQN+P++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  
Sbjct: 656 DPNLQNVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGE 715

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+++FGV   +V  +MRR  K +++ + YG+S F L+ QL I   EA   +  Y
Sbjct: 716 DLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEARALMDTY 775

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+    +  R  GY  T+ GRR +  ++NS     R   ER A+NAPIQG+
Sbjct: 776 FERFGGVRDYLRHVVDEARATGYTATMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGT 835

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V ++L +  L++++LLQ+HDE+V E+   E      I+   M  A    
Sbjct: 836 AADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERDEVETIVRREMSSA---- 891

Query: 956 INLRVPLKVNIKVSNNWQ 973
           + L  PL V++ V  +W+
Sbjct: 892 VELSAPLDVSVGVGADWE 909


>gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
 gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
          Length = 885

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/982 (29%), Positives = 452/982 (46%), Gaps = 110/982 (11%)

Query: 1   MQ-KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M  ++N L L+DG S  +RAFYA P        G   NAI GF +ML  LL + +     
Sbjct: 1   MTDEKNRLMLIDGHSMAFRAFYALPTEKFTTSTGQATNAIYGFLSMLATLLHDEQ----P 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV FD    TFR E++PDYKA R + P   + Q+P+++    A GI  IE   +EAD
Sbjct: 57  THVAVAFDVGRTTFRTEMFPDYKAQRDETPPEFISQIPILKNLLTALGITTIEKPNYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           DIIAT    A+  GF   I++ D+D +QLV+ TT +   +K      +   + V  K+G+
Sbjct: 117 DIIATLATTAQPLGFETLIVTGDRDSLQLVNNTTTVLYPMKGVSVIHRFTPQAVQDKYGL 176

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+     AL GD  DN+P IP +G KTA   + ++GNL                 N+L
Sbjct: 177 TPEQYPDFAALRGDPSDNLPSIPKVGEKTATKWIVQHGNL----------------TNLL 220

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
             A+          ++  V   +       E  +  +L   L  +     +         
Sbjct: 221 NNAD---------TIKGVVGTNL------RERIDQVKLNRQLTEMVKNLDLTHTPPELKL 265

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
              N + +  D N  E                                   T +   L+ 
Sbjct: 266 QPVNTKTLTEDFNNLEFGT--------------------------------TLRTKILKA 293

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                            V+T  + +W+++  T             +A           T 
Sbjct: 294 RGVTVDTTATPPQTPTTVDTIGVAKWLKQHPT-------------EAMAVHITGRG--TP 338

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
              D  SF +    ID + H    +        +    L  + ++    K  H+ K    
Sbjct: 339 ATGDAESFAI----IDQNHHAIAGNFADLNPKDD--KALADYLQS-TQPKFLHDAKTTYH 391

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +L   GI++ G   D  L +Y+L+ G+ ++D+ +  Q+ L +   EI ++    + +  I
Sbjct: 392 MLAGRGITLGGIAHDTALAAYLLNPGQRTYDLKTTYQRHL-HRTLEITETG--QLSLLDI 448

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +++     A      +         KL     L +Y  L+ P+  ++++ME TGI +D  
Sbjct: 449 TNTNTLITAAAAILELAATLPT---KLATINELELYLDLELPLTTILAEMEATGIAVDIP 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            L++     +  +   E     ++G+    L+SPKQL  +LF  L  P   K KTG    
Sbjct: 506 TLEEQLDTFTNLVTQEETAARTIAGDPNLLLTSPKQLQVVLFETLGLPKTKKIKTGYSTA 565

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             +         +  + ++L  R+  K+K+T  + L   +     R+HT +    T TGR
Sbjct: 566 AKEIETLAANHPHEFLNHLLAHREYQKMKTTL-EGLIKAVGDDG-RIHTTFQQTMTSTGR 623

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S +PNLQNIPI+T  G+KIR AF        L++ADYSQIE+R++AH++    L   +
Sbjct: 624 LSSTDPNLQNIPIRTPAGKKIRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAY 683

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            N  D+H  V A++F V    V+P++RR  K +++ ++YG+S F L+ QL IP  EA   
Sbjct: 684 NNGEDLHNYVGAKVFDVPPSGVTPELRRKVKALSYGLVYGLSAFGLSQQLNIPAGEAKQI 743

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           ++ YFHRF G+  Y++      R++GY  T+F RR +  E+ S   + R   ERAA+NAP
Sbjct: 744 MENYFHRFGGVKHYLDTVVTQARKDGYTATLFDRRRYLPELTSTNRATRENAERAALNAP 803

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AM+ +H  L+     +++LLQ+HDELV E+   E+TT  ++I H M+ A
Sbjct: 804 IQGTAADIIKIAMLRIHHELKKTNAKSRVLLQVHDELVVEIAPGELTTVKKLIEHEMDNA 863

Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973
               I L+VPL+V+     NW 
Sbjct: 864 ----ITLKVPLEVSTGHGPNWD 881


>gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545]
          Length = 877

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/990 (31%), Positives = 472/990 (47%), Gaps = 132/990 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DNI   PG+                       ++ +K   + +LE
Sbjct: 178 PAQFIDLKALMGDKSDNI---PGVT----------------------KVGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVATTY 292
           +                      LE +  E+ +G +     + L   +    +++   T 
Sbjct: 213 HG--------------------SLEGI-YENIDGMKTSKMKENLINDKEQAFLSKTLATI 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + +      G  +E        +   Q      Q   ++S    + L  
Sbjct: 252 DTKA----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAKGLDF 303

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
             + ++SQ  ++ +S                        F       +      +  A S
Sbjct: 304 TIVDQISQDMLSEES-----------------------IFHFELFGENYHTDNLVGFAWS 340

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             D+                      +T K  L ++     K F E        ++ K  
Sbjct: 341 CGDK--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKV 376

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
           K++L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +
Sbjct: 377 KVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKA 435

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP       +  EH      V+++   +L  KL     L +   +++P+  V+++MEI G
Sbjct: 436 IP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAG 491

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT
Sbjct: 492 IVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKT 551

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    
Sbjct: 552 KTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYMQDL 610

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEH 670

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R
Sbjct: 671 LIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISR 730

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  YF RFPGI  Y+++     R   YVET+F RR    +INS   +IR   ER
Sbjct: 731 KEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGFAER 790

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++ 
Sbjct: 791 TAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVK 850

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPL  +      W E 
Sbjct: 851 QTMEEA----IQLSVPLIADENEGATWYEA 876


>gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
 gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
          Length = 885

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/988 (30%), Positives = 479/988 (48%), Gaps = 119/988 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S ++RAF+A           DGL   AI GF  ML  +L     ++ 
Sbjct: 1   MAKQ--LLLIDGNSIVFRAFFAMHNQIDKFTNKDGLHTAAIYGFKLMLDHVLDKFHPDA- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD   VTFR ++Y DYK  R K P+ L  Q P VR   +A G+ + E++ +EA
Sbjct: 58  ---ALVAFDAGKVTFRTKMYDDYKGGRNKTPDELTEQFPYVRELVEACGLHSYELKNYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     ++ G+   I++ D+DL QL S  T +  T K     E     HV +K G
Sbjct: 115 DDIIGTLAKEGDEAGYETLIVTGDRDLTQLASDHTTVAVTHKGVTDTEHYTPAHVEEKLG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                                    I  +    +    G+  +     ++I +K   + +
Sbjct: 175 -------------------------ITPRQIIDMKALMGDSSDNYPGVTKIGEKTAIKLV 209

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            ++          V    D      ++ L              + L   + I R   T  
Sbjct: 210 KQFGS--------VENLYD-----HIDDLKKSKMK--------EHLVEDEEIARQCKTLA 248

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                  P+ + ++    +G   E  +     +    F +  D   +  ++ +       
Sbjct: 249 T-ILQDAPLEISLDDIAYRGEQTEKLVAFYQQMGFKSFLAKMDLAPEEGADDSA------ 301

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                         YT++  T D    V +L+  G  SF +     +   S         
Sbjct: 302 -----------PVKYTEL--TADNLAAVDQLK--GELSFYLEMPDANYHTS--------- 337

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                   F    I    +   S+D+           + LKK  E+    K   N K   
Sbjct: 338 -------PFAGFVIGDGTTWLVSRDAELLKQ------APLKKLLESPAVAKNVFNAKAQI 384

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSI 528
           + LHR GI +R  + D++L SY+L++  +S+D+  +A +   +      +   K  K +I
Sbjct: 385 VGLHRLGIDLRNVDFDLLLASYLLNTNDNSNDLGQVALEHDYHEVATDEEVYGKGAKRAI 444

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D     H  + +  I  L   L  KL   +   +Y  ++ P+  V++ MEITGI
Sbjct: 445 PDD---DQTFYTHLAQKARAINDLRDPLFKKLDDNQQTPLYTEIEVPLTRVLAAMEITGI 501

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +++   LK + +++++ L  +E+ IY  +GE+FN++S KQLG ILF KLK P   KTKTG
Sbjct: 502 KVNSQTLKDMGSKLTERLADIEDQIYAAAGEEFNINSTKQLGHILFEKLKLPVIKKTKTG 561

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +      PI+++IL++RQ++K++STY   L   I+   Q++HT Y    T
Sbjct: 562 Y--STAVDVLEKLADQAPIVEDILQYRQIAKLQSTYITGLLKVIHSSDQKIHTRYLQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++   G+ IR+AF+      ++ S+DYSQ+ELR+LAHI     L
Sbjct: 620 QTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNL 679

Query: 768 YQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F+N  DIH   A  IF +  + ++   MRR AK +NF I+YGIS + LA ++ + RS
Sbjct: 680 QEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNFGIVYGISDYGLAQRIHVSRS 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I+ YF  FPG+ +YI+ T  F R++GYVETI  RR +  +I++   S R+  ER 
Sbjct: 740 QAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVETITHRRRYLPDIHAKSFSRRSFAERT 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + + ++  +L  +MLLQIHDELVFE P EEI    +++  
Sbjct: 800 AMNTPIQGSAADIIKIAMIRMKEEIKQRQLQARMLLQIHDELVFEAPAEEIPVLQKLVPQ 859

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M+ A    + L VPLKV  KV + W +
Sbjct: 860 VMDSA----VQLNVPLKVESKVGDTWYD 883


>gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
 gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae
           TIGR4]
 gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I
 gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
          Length = 877

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/990 (31%), Positives = 471/990 (47%), Gaps = 132/990 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL GD  DN   IPG                       +++ +K   + +LE
Sbjct: 178 PAQFIDLKALMGDKSDN---IPG----------------------VTKVGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVATTY 292
           +                      LE +  E+ +G +     + L   +    +++   T 
Sbjct: 213 HG--------------------SLEGI-YENIDGMKTSKMKENLINDKEQAFLSKTLATI 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + +      G  +E        +   Q                     L
Sbjct: 252 DTKA----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------L 286

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           ++   +S   ++      IV+        ++      + F       +      +    S
Sbjct: 287 KQALNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFVWS 340

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             D+                      +T K  L ++     K F E        ++ K  
Sbjct: 341 CGDK--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKV 376

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
           K++L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +
Sbjct: 377 KVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKA 435

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP       +  EH      V+++   +L  KL     L +   +++P+  V+++MEI G
Sbjct: 436 IP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAG 491

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT
Sbjct: 492 IMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKT 551

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    
Sbjct: 552 KTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDL 610

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEH 670

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R
Sbjct: 671 LIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISR 730

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER
Sbjct: 731 KEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAER 790

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++ 
Sbjct: 791 TAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVK 850

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPL  +      W E 
Sbjct: 851 QTMEEA----IQLSVPLIADENEGATWYEA 876


>gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
 gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
          Length = 880

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/991 (30%), Positives = 479/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL                          G+  + +   ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALM-------------------------GDKSDNIPGVTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +  E  +G           F     +    
Sbjct: 212 LLHEFG--------------------SLEGI-YEHIDG-----------FKASKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D    +H + I I  
Sbjct: 291 KGLASQMPQEPVAAISYQEVTNVSA-----DLFSAEDIFYFETLRDN---YHCEAI-IGF 341

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +    +   +                       L+       K+ F+        ++ K 
Sbjct: 342 AWGHGEQIYA--------------------STDLSLLATDSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232]
 gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232]
          Length = 880

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/991 (30%), Positives = 479/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  R    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVR---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL                          G+  + +   ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALM-------------------------GDKSDNIPGVTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +  E  +G           F     +    
Sbjct: 212 LLHEFG--------------------SLEGI-YEHIDG-----------FKASKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAAISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLSLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+ +DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLGSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 889

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/978 (27%), Positives = 434/978 (44%), Gaps = 101/978 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L ++DG S  YRAF+A P+ +     G   N + GF +ML  +L++       +H AV 
Sbjct: 3   RLLVLDGHSLAYRAFFALPVENFSTSTGQHTNGVYGFTSMLINVLRDEN----PTHVAVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y DYKA R   P     Q+ LVR    A  I  +++ GFEADD+IAT 
Sbjct: 59  FDVSRKTFRSEEYADYKATRSATPSEFQGQVALVREVLDALRIKHVQVDGFEADDVIATL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180
           T +AE EG  V I++ D+D  QLV+    L   V+      ++D + V  K+ + PE+  
Sbjct: 119 TTMAEAEGMEVVIVTGDRDAFQLVTDNVSLIYPVRGVSDVWRMDPKAVEDKYLVAPERYS 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL G++ DN+PG+PG                         +  K   + +  Y +  
Sbjct: 179 DLAALVGETSDNLPGVPG-------------------------VGPKTAAKWLGLYGDL- 212

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
               + V+   D           ++   G  L   L  +   + +N++           E
Sbjct: 213 ----QGVVAHAD----------EIKGKAGESLREHLNGVLRNRRLNQLVRDLSLPVTIAE 258

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                 +  E   +    E           F +  D+                       
Sbjct: 259 LERATWDREEVHKVFDGLEFRVLRDRLFETFDAAPDEAEGGFDLDA-------------- 304

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                     ++++ +++ W+ +  T            +    +        T       
Sbjct: 305 ---------SVLSSAEVKPWLDEHAT-------TEPTGVHVVGAWGRGTGDVTAVGLATA 348

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +ID+   T  D  G+  L   +    +         KI H+ K     L   G
Sbjct: 349 GDA--AAYIDV---TELDEDGEKALADWLADAARP--------KILHDAKGPMHALEARG 395

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           + +RG   D  L +Y++   + S D+A +  + L    K    +    +      +  V 
Sbjct: 396 MPLRGVTMDTALAAYLVKPDQRSFDLADLVVRHLGRELKAEEHAGGQGLLDFDTDEEVVG 455

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           + A+  +  +L L + L  +L       +   ++ P++D++  ME TGI +D D L  + 
Sbjct: 456 QDAMVRARAVLDLSVPLSEQLEATGGTELLRDIELPLVDILGAMERTGIAVDTDALSALE 515

Query: 600 AEISKNLLSLEENIYD-LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           A+    +   + + Y+ + G++ NL SPKQL  +LF  L  P   +TKTG         +
Sbjct: 516 ADFDAKVREAQLDAYEAIGGDEINLGSPKQLQTVLFETLGLPKTRRTKTGYTTDADALTD 575

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                 +P ++ +L  R   +++ T  + L   +    QR+HT Y      TGRL+S +P
Sbjct: 576 LYAKTQHPFLEAMLRHRDAMRLRVT-VEGLIKSV-AEDQRIHTTYIQTIAATGRLSSTDP 633

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQN+PI+T+ G++IR  F+     + L+SADYSQIE+RI+AH++    L + F    D+
Sbjct: 634 NLQNVPIRTEAGRRIREVFVVGKGYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDL 693

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR V A +FGV  E V+ +MR   K +++ + YG+S F L+ QL I   EA   +  YF 
Sbjct: 694 HRFVGARVFGVEPEDVTAEMRSKVKAMSYGLAYGLSAFGLSKQLTISTGEAQGLMDEYFA 753

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF G+ +Y+ +     R  GY  T+ GRR +  ++ S     R   ER A+NAPIQGSAA
Sbjct: 754 RFGGVRDYLREVVGEARATGYTATMLGRRRYLPDLTSDNRQRREGAERMALNAPIQGSAA 813

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM  V  +L +    ++MLLQ+HDELV EV E E      ++   M +A    + 
Sbjct: 814 DIIKLAMKGVDSALRESGAKSRMLLQVHDELVLEVAEGERDDVEALVRAEMGRA----VE 869

Query: 958 LRVPLKVNIKVSNNWQEE 975
           + VPL V++ + ++W + 
Sbjct: 870 MDVPLDVSVGLGHSWHDA 887


>gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14]
          Length = 871

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/984 (28%), Positives = 457/984 (46%), Gaps = 127/984 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + + L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L   + E    +  V
Sbjct: 2   RDKIVLIDGHSILNRAFYGVPDLTN-SEGLHTNAVYGFLNIMFKILDEEKPE----YLTV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+E++ DYK  R  + E L  Q+P+++   +A  I  IE  G EADD++ T
Sbjct: 57  TFDVHAPTFRHEMFADYKGTRKPMAEELRQQVPVIKDVLRAMHIEVIEKAGLEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
            ++  E++G  V+IIS D+D +QL +    +     +      E      V +++G    
Sbjct: 117 LSHRCEEKGMDVSIISGDRDTLQLATEHIKIRIPKTKQGKTEVEDYYAADVQERYG---- 172

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY- 236
                                +  K    +    G+  + +     + +K   + I +Y 
Sbjct: 173 ---------------------VTPKEFIDVKALMGDTADNIPGVPGVGEKTATKIIQQYQ 211

Query: 237 -AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A                  ++ L       PR    LK       +++   T   D
Sbjct: 212 TIENAY---------------EHVDELK-----PPRASKNLKEFWEQAQLSKTLATIKLD 251

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A       L+    EN       E+ +    K                        L R 
Sbjct: 252 ADIT--FELENARHENPYTKEAHELFQRLEFKN----------------------LLGRF 287

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              +        + ++   ++I++  ++ E                  ++ + +A S   
Sbjct: 288 DVEASVNDVEKYFREVTGKEEIEKVFKEAEK-----------------AETVGVAFSKDA 330

Query: 416 QKDDTSFKVETIFIDLSV-HTSQDSTGKNTLTKEILSYLK---KFFENEHFLKIGHNIKY 471
                 F   + +  +S+ + ++              YL                  +K 
Sbjct: 331 GNVLPLFAHASGYGRVSLCYEAEKIVTIPCDMDADFEYLTGKLSHLAKSVKRFSMCGLKE 390

Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
               L    ++     D ++ +Y+L+  ++ ++   +A++ L+    E L     S    
Sbjct: 391 YLEWLP--ELTSENGFDAIVAAYLLNPLKNDYNAEDVAREHLNLLIDEKLDEGTKS---- 444

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
                         +        +L  KL    +  ++  ++ P++  +  ME  G++++
Sbjct: 445 -----------CYEAYTAYACVPVLEKKLEENGMFCLFNEIEMPLVFTLYDMEQAGVKVE 493

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + LK+   E+   ++ LE+ IY+++GE+FN++SPKQLG ILF KL+ P   KTKTG   
Sbjct: 494 GEELKRYGEELGARIVELEKEIYEMAGEEFNINSPKQLGVILFEKLEMPHAKKTKTGY-- 551

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +TA D+      + PI+  ILE+RQL+K+KSTYAD L N+I     R+H+ ++   T TG
Sbjct: 552 STAADVLDKLAPEYPIVAKILEYRQLAKLKSTYADGLANYIGMDG-RIHSKFNQTITATG 610

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R++S EPNLQNIP++ +LG+ IR+ F+       + ADYSQIELRILAH +    L Q +
Sbjct: 611 RISSTEPNLQNIPVRMELGRLIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAY 670

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
             + DIHRM A+++F V  ++V+   RR+AK +NF I+YGIS F L+  L I R EAA Y
Sbjct: 671 REARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQY 730

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF  +PGI  +++K  +  ++ GY ET++GRR    E+ S     R+  ER A+NAP
Sbjct: 731 IEHYFESYPGIKTFLDKCVSDAKEKGYAETLYGRRRPMPELKSSNFMQRSFGERVAMNAP 790

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI V++ L+   L ++M+LQ+HDEL+ E  E E+    QI+   ME A
Sbjct: 791 IQGTAADIIKIAMIHVNEELKKRNLKSRMILQVHDELLIEADETELEEVQQILQDKMEHA 850

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
                 L VPL V++    NW E 
Sbjct: 851 A----ELLVPLSVDMHTGKNWYEA 870


>gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
 gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
          Length = 880

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/991 (30%), Positives = 479/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL                          G+  + +   ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALM-------------------------GDKSDNIPGVTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +  E  +G           F     +    
Sbjct: 212 LLHEFG--------------------SLEGI-YEHIDG-----------FKASKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPEVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAAISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREDIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DL +  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLGLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDIVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
 gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
          Length = 880

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/991 (30%), Positives = 479/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL                          G+  + +   ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALM-------------------------GDKSDNIPGVTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +  E  +G           F     +    
Sbjct: 212 LLHEFG--------------------SLEGI-YEHIDG-----------FKASKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAAISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DL +  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLGLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
          Length = 605

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/619 (40%), Positives = 375/619 (60%), Gaps = 20/619 (3%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +          
Sbjct: 2   ISYDNYVTILDEETLKAWIAKLEKAPVFAFATETDSLDNISANLVGLSFAIEPGV-AAYI 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
            V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L  YGI 
Sbjct: 61  PVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQV 538
           +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I+  + 
Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L  
Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + L
Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S +
Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DI
Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF 
Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+AA
Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME        
Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT----R 586

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPL V +    NW + +
Sbjct: 587 LDVPLLVEVGSGENWDQAH 605


>gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
 gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
          Length = 880

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/991 (30%), Positives = 478/991 (48%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL                          G+  + +   ++I +K   +
Sbjct: 177 MGLTPNQFIDLKALM-------------------------GDKSDNIPGVTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E+                      LE +  E  +G           F     +    
Sbjct: 212 LLHEFG--------------------SLEGI-YEHIDG-----------FKASKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAAISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLSLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL +RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILAYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+P I  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKTYIDTYFERYPRIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 906

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/979 (26%), Positives = 438/979 (44%), Gaps = 99/979 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++       +HF
Sbjct: 15  DRPRLMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASMLANTLRDE----APTHF 70

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R+E + +YKANR K P+    Q+ L+     A       ++GFEADDII
Sbjct: 71  AVAFDVSRKTWRSEEFTEYKANRSKTPDEFKGQVQLIGELLDAMHADRFAVEGFEADDII 130

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE  GF V I++ D+D  QLVS    +    K      +   E V++K+G+ P 
Sbjct: 131 ATLATQAEAAGFDVLIVTGDRDSFQLVSEHVTVLYPTKGVSELTRFTPEKVLEKYGLTPS 190

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN   +PG                         + +K   + I ++ 
Sbjct: 191 QYPDFAALRGDPSDN---LPG----------------------IPGVGEKTAAKWINQFG 225

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A    +LV    +V           +   G  L   L++++  + +  +    + D  
Sbjct: 226 SFA----ELVERVEEV-----------KGKAGQNLREHLESVKLNRRLTELERQVELD-- 268

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                         + +A    +  D    T    SL  +   +           E ++ 
Sbjct: 269 --------------RTVADLERVAYDRKAVTLLLDSLEIRNPSLRERLFAVDPGAEEVEA 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        ++    ++ W+ +  T+      + T  +            S  +  
Sbjct: 315 APVAAGVAVD-GAVLGAGALKPWLAEHGTVPLGLATVDTWALGTG---------SVAEVA 364

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             T+      F                + +E       +  +    K+ HN K    V  
Sbjct: 365 LATAAGPAAWFDP------------TEVDEEDERAFAAWLADPARPKVLHNAKGAMRVFA 412

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            +G ++ G   D  L +Y++  GR S D+ ++  ++L    +E+     +   +   +D 
Sbjct: 413 EHGWTIEGVTMDTALAAYLVKPGRRSFDLDALTLEYLG---RELAPPAAADGQLAFGADE 469

Query: 537 QVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + +  A+   +  IL L      +L       +   ++ P   ++++ME  GI  D+  L
Sbjct: 470 EAEADALMVQARAILDLGEAFTGRLKEVGAADLLGDMELPTSALLARMERHGIAADRAHL 529

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +    +  +       +  +G +FNL SPKQL ++LF +L  P   KTKTG       
Sbjct: 530 ESMEQMFAGAVQQAVREAHAAAGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADA 589

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   +N +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+S
Sbjct: 590 LAWLAAQTENELPVIMLRHREQAKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLSS 647

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F + 
Sbjct: 648 TDPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDAGLIEAFTSG 707

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H   A+++FGV    V  +MRR  K +++ + YG+S F L+ QL I  +EA   ++ 
Sbjct: 708 EDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAAEARTLMEA 767

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+ +     R  GY  T+FGRR +  ++NS     R   ER A+NAPIQG
Sbjct: 768 YFERFGGVRDYLRRVVEEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQG 827

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ V ++L    LA++MLLQ+HDE+V E+   E      ++   M  A   
Sbjct: 828 TAADIVKIAMLRVGEALRAAGLASRMLLQVHDEIVLEIAPGERERVEALLRREMTTA--- 884

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            ++L+ PL V++ V  +W+
Sbjct: 885 -VHLKAPLDVSVGVGRDWE 902


>gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74]
          Length = 605

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/620 (40%), Positives = 375/620 (60%), Gaps = 20/620 (3%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +         
Sbjct: 1   MISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV-AAY 59

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L  YGI
Sbjct: 60  IPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGI 110

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
            +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I+  +
Sbjct: 111 ELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQIALEE 170

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L 
Sbjct: 171 AGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLH 230

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + 
Sbjct: 231 NHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEV 290

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S 
Sbjct: 291 LEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSST 349

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    D
Sbjct: 350 DPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKD 409

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF
Sbjct: 410 IHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYF 469

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+A
Sbjct: 470 ERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTA 529

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME       
Sbjct: 530 ADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT---- 585

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V +    NW + +
Sbjct: 586 RLDVPLLVEVGSGENWDQAH 605


>gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
 gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
          Length = 872

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/976 (31%), Positives = 494/976 (50%), Gaps = 119/976 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DGSS +YRA+YA P+L+   +GLP NA+ GF  ML KL++  + +    + A+ F
Sbjct: 3   KFLIIDGSSLMYRAYYALPMLTT-SEGLPTNALYGFTMMLIKLIEEEKPD----YIAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y DYKA R  +PE L  Q+  ++     F I  +E++G+EADDII T +
Sbjct: 58  DKKAPTFRHKEYQDYKATRQAMPEELAEQVDYLKEIIDGFNIKTLELEGYEADDIIGTIS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE++G  V +++ D+D +QLVS    +  + K     E+ D + +++++         
Sbjct: 118 KLAEEKGMEVLVVTGDRDALQLVSDKVKIKISKKGITQMEEFDEKAILERY--------- 168

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
                           GI  +    L    G+  + +     I +K   + + ++     
Sbjct: 169 ----------------GITPQQFIDLKGLMGDKSDNIPGVPNIGEKTAIKLLKDFG---- 208

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                            +E+LI    N  +L   +K          + +          P
Sbjct: 209 ----------------TIENLIQ---NLSQLKGKIKENIENNKELAIMSKRLATIKRDIP 249

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           + +D    + K    E  +         +F SL D   K +S +      +E+  K+   
Sbjct: 250 IEIDFEEYKVKKFNEEKLL---ELFNKLEFFSLIDNIKKESSIEIVDNHKVEKWSKV--- 303

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                         DI++ V  L+   + +F  +      +  +   IA S    KD   
Sbjct: 304 --------------DIKELVTLLQDNRNIAFYPL-----IYEGEIKKIAFSF--GKDTVY 342

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V                            LK+ FE E F    H IK   + L   GI
Sbjct: 343 IDVFQT-----------------------EDLKEIFEKEDFEFTTHEIKDFLVRLSYKGI 379

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
             +  + D  +M+Y+L+   S++D+  + +K+L       + I    +    I++I ++ 
Sbjct: 380 ECKSKYIDTAVMAYLLNPSESNYDLDRVLKKYLKVDVPSYEGIFGKGRDKKKIEEIDENI 439

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           + ++       +  L   L   +    +  +   ++ P+++V+  ME++G  +D+++LK+
Sbjct: 440 LADYICSRCVYLFDLKEKLMNFIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKE 499

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S +I   +  + + IY  +G +FN++SPKQL + LF KL  P   KTKTG + T ++ L
Sbjct: 500 LSQKIDDRIGEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVL 558

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           EQ+    N I+ +I+E+RQL+K+KSTY D     +++   RVH+ +    T TGR++S E
Sbjct: 559 EQL-VPYNDIVSDIIEYRQLTKLKSTYIDGFLPLMDE-NNRVHSNFKQMVTATGRISSTE 616

Query: 718 PNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+ + G++IRRAFI       ++SADYSQIELR+LAH++    L + F N+ D
Sbjct: 617 PNLQNIPIREEFGRQIRRAFIPRSRDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNED 676

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+E+F V +EKV+P+MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF
Sbjct: 677 IHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYF 736

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+ G+ EYIEK   F ++NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSA
Sbjct: 737 ERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSA 796

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V+  L+  KL +K++LQ+HDELV +  ++E+    +I+  +ME      +
Sbjct: 797 ADIIKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTYKDEVDIIKKILKENMENV----V 852

Query: 957 NLRVPLKVNIKVSNNW 972
            L+VPL V I V  NW
Sbjct: 853 QLKVPLVVEIGVGPNW 868


>gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T]
 gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6]
          Length = 605

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/620 (40%), Positives = 376/620 (60%), Gaps = 20/620 (3%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +         
Sbjct: 1   MISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV-AAY 59

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   ++D     S          +  L  LK   E+E  LK+G N+KYD+ +L  YGI
Sbjct: 60  IPVAHDYLDAPDQISH---------ERALELLKPLLEDEKALKVGQNLKYDRGILANYGI 110

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
            +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I+  +
Sbjct: 111 ELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEE 170

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L 
Sbjct: 171 AGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLH 230

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + 
Sbjct: 231 NHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEV 290

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S 
Sbjct: 291 LEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSST 349

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    D
Sbjct: 350 DPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKD 409

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF
Sbjct: 410 IHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYF 469

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+A
Sbjct: 470 ERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTA 529

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME       
Sbjct: 530 ADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT---- 585

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V +    NW + +
Sbjct: 586 RLDVPLLVEVGSGENWDQAH 605


>gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 872

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/976 (31%), Positives = 494/976 (50%), Gaps = 119/976 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DGSS +YRA+YA P+L+   +GLP NA+ GF  ML KL++  + +    + A+ F
Sbjct: 3   KFLIIDGSSLMYRAYYALPMLTT-SEGLPTNALYGFTMMLIKLIEEEKPD----YIAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y DYKA R  +PE L  Q+  ++     F I  +E++G+EADDII T +
Sbjct: 58  DKKAPTFRHKEYQDYKATRQAMPEELAEQVDYLKEIIDGFNIKTLELEGYEADDIIGTIS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE++G  V +++ D+D +QLVS    +  + K     E+ D + +++++         
Sbjct: 118 KLAEEKGMEVLVVTGDRDALQLVSDKVKIKISKKGITQMEEFDEKAILERY--------- 168

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
                           GI  +    L    G+  + +     I +K   + + ++     
Sbjct: 169 ----------------GITPQQFIDLKGLMGDKSDNIPGVPNIGEKTAIKLLKDFG---- 208

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                            +E+LI    N  +L   +K          + +          P
Sbjct: 209 ----------------TIENLIQ---NLSQLKGKIKENIENNKELAIMSKRLATIKRDIP 249

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           + +D    + K    E  +         +F SL D   K +S +      +E+  K+   
Sbjct: 250 IEIDFEEYKVKKFNEEKLL---ELFNKLEFFSLIDNIKKESSIEIVDNHKVEKWSKV--- 303

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                         DI++ V  L+   + +F  +      +  +   IA S    KD   
Sbjct: 304 --------------DIKELVTLLQDNRNIAFYPL-----IYEGEIKKIAFSF--GKDTVY 342

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V                            LK+ FE E F    H IK   + L   GI
Sbjct: 343 IDVFQT-----------------------EDLKEIFEKEDFEFTTHEIKDFLVRLSYKGI 379

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
             +  + D  +M+Y+L+   S++D+  + +K+L       + I    +    I++I ++ 
Sbjct: 380 ECKSKYIDTAVMAYLLNPSESNYDLDRVLKKYLKVDVPSYEGIFGKGRDKKKIEEIDENI 439

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           + ++       +  L   L   +    +  +   ++ P+++V+  ME++G  +D+++LK+
Sbjct: 440 LADYICSRCVYLFDLKEKLMNFIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKE 499

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S +I   +  + + IY  +G +FN++SPKQL + LF KL  P   KTKTG + T ++ L
Sbjct: 500 LSQKIDDRIGEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVL 558

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           EQ+    N I+ +I+E+RQL+K+KSTY D     +++   RVH+ +    T TGR++S E
Sbjct: 559 EQL-VPYNDIVSDIIEYRQLTKLKSTYIDGFLPLMDE-NNRVHSNFKQMVTATGRISSTE 616

Query: 718 PNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+ + G++IRRAFI       ++SADYSQIELR+LAH++    L + F N+ D
Sbjct: 617 PNLQNIPIREEFGRQIRRAFIPRSRDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNED 676

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+E+F V +EKV+P+MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF
Sbjct: 677 IHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYF 736

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+ G+ +YIEK   F ++NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSA
Sbjct: 737 ERYKGVKDYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSA 796

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V+  L+  KL +K++LQ+HDELV +  ++E+    +I+  +ME      +
Sbjct: 797 ADIIKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTYKDEVDIIKKILKENMENV----V 852

Query: 957 NLRVPLKVNIKVSNNW 972
            L+VPL V I V  NW
Sbjct: 853 QLKVPLVVEIGVGPNW 868


>gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 905

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/978 (26%), Positives = 434/978 (44%), Gaps = 98/978 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G   NAI GF +ML   L++       +HF
Sbjct: 15  NRPRLLLMDGHSLAYRAFFALPAENFSTASGQTTNAIYGFASMLANTLRDE----APTHF 70

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R++ YP+YKANR   P+    Q+ L+             + GFEADDII
Sbjct: 71  AVAFDVSRKTWRSKDYPEYKANRSATPDEFKGQVELIGELLDTMNAVRFAVDGFEADDII 130

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE EGF V I++ D+D  QLVS  T +    K      +   E V +K+G+ P 
Sbjct: 131 ATLATQAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVQEKYGLTPS 190

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPG+G                         +K   + I ++ 
Sbjct: 191 QYPDFAALRGDPSDNLPGIPGVG-------------------------EKTAAKWINQFG 225

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A    +LV    +V                 ++    +       +NR  T    D  
Sbjct: 226 SFA----ELVERADEV---------------KGKVGQSFRDHLEAVKLNRHLTELVRDVE 266

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +PV        ++          +    + +   L+        E    +  +E    
Sbjct: 267 LAKPVAGLERAPYDRSALKNFLEILEIRNPSLRERLLAVDPGATEDEAPAPEAGIELDG- 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        ++ T ++  W++                  +  ++P+ +A  T    
Sbjct: 326 ------------SVLATGELAPWLE------------------SHGAQPLGVATVTSWSL 355

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    +          D+T  +   +   +    +  +    K+ HN K    V  
Sbjct: 356 GTGQVSEIALAAADGKAAWFDTTRLDEADERAFAA---WIADPARPKVMHNAKDALRVFP 412

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            +G  + G   D  L +Y++  GR S  + +++ ++L           + +   D+ +++
Sbjct: 413 EHGWRVDGITMDTALAAYLVKPGRRSFALDALSVEYLHRELVPAAADGQLAFGTDEHAEA 472

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
                 +  +  +L L      +L       +   ++ P  +++++ME  GI  D+  L+
Sbjct: 473 DA---LMAQARAVLDLGDAFTARLEEVGATELLHDMELPTSELLARMERHGIAADRAHLE 529

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +    +  +    +  +   G +FNL SPKQL ++ F +L  P   KTKTG        
Sbjct: 530 SMEHLFAGAVQQAVKEAHATVGHEFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADAL 589

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  ++ +   +L  R+ ++++ST  + L   +     R+HT +S     TGRL+S 
Sbjct: 590 AWLAGQTEHELPVIMLRHREQARLRST-VEGLIKTVAADG-RIHTTFSQTVAATGRLSST 647

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQN+P++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  
Sbjct: 648 DPNLQNVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGE 707

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+++FGV   +V  +MRR  K +++ + YG+S F L+ QL I   EA   +  Y
Sbjct: 708 DLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEARALMDTY 767

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+    +  R  GY  T+ GRR +  ++NS     R   ER A+NAPIQG+
Sbjct: 768 FERFGGVRDYLRHVVDEARATGYTATMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGT 827

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V ++L +  L++++LLQ+HDE+V E+   E      I+   M  A    
Sbjct: 828 AADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERDEVETIVRREMSSA---- 883

Query: 956 INLRVPLKVNIKVSNNWQ 973
           + L  PL V++ V  +W+
Sbjct: 884 VELSAPLDVSVGVGADWE 901


>gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50]
          Length = 665

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/717 (32%), Positives = 367/717 (51%), Gaps = 68/717 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKIMAAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A LS +L  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                            Q +S++D+  ++ +              
Sbjct: 301 GAKPAAK------------------------PQETSVADEAPEVTA-------------- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +     
Sbjct: 323 ---TVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L 
Sbjct: 380 -AAYIPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILA 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
            YGI +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +  +   +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID 
Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +L   S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T
Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T 
Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTA 665


>gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 916

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/988 (30%), Positives = 474/988 (47%), Gaps = 119/988 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S ++RAF+A            GL   AI GF  ML  +L+  + ++ 
Sbjct: 31  MAKQ--LLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDA- 87

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR E Y DYK +R K P  L+ QLP VR   +A G+ A E+  +EA
Sbjct: 88  ---ALVAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEA 144

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     ++ GF   I++ D+DL QL +  T +  T +     E+    ++ +K G
Sbjct: 145 DDIIGTLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLG 204

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                                 +    Y     L+   G+  +     ++I +K     I
Sbjct: 205 ----------------------VTPRQYIDVKALM---GDSSDNYPGVTKIGEKTAVSLI 239

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            EY                                   L    + +   K   R     +
Sbjct: 240 QEYG---------------------------------SLDGLYENIAAMKKSKRKENLIN 266

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            +    E   L     +    A      +D   +    ++L D   +++ +   ++L  +
Sbjct: 267 EEKIARECQDLATIRRD----APLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQ 322

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             +  +Q       Y  +   +D    V +L    +  F++     +   S      I  
Sbjct: 323 --EGGAQVDQAPIEYQVL--DEDNMALVDQLGA--TVCFQLEMPDANYHESPLAGFVI-- 374

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               D   + V      L+                  + LKK  E+    K   N K   
Sbjct: 375 ---GDGKRWLVSRNADLLTT-----------------APLKKLLEDPAVEKDVFNAKAQL 414

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSI 528
           + LHR G+ + G   D++L SY+L++  +++D+  +A     +      +   K  K +I
Sbjct: 415 VGLHRLGVDLAGVNFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAI 474

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D     H  + +  I  L   L  +L   + L +YE +++P+  V++ MEITGI
Sbjct: 475 PAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGI 531

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D   LK++ +++ +    LE+ IY  +GE+FN++SPKQLG ILF K+K P   KTKTG
Sbjct: 532 HVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPKQLGVILFEKMKLPVIKKTKTG 591

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +      PI+++IL +RQ+SK++STY   L   I++  Q++HT Y    T
Sbjct: 592 Y--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLT 649

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++ + G++IRRAF    P  K+ S+DYSQ+ELR+LAH+     +
Sbjct: 650 ATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIFSSDYSQVELRVLAHVTGDKNM 709

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
              F    DIH   A  IF + + ++V+P MRR AK +NF I+YGIS + LA  + + R 
Sbjct: 710 QADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNIHVSRP 769

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I+ YF  FPG+ +Y+       +Q GYVET+  RR +  EI++   + R+  ER 
Sbjct: 770 QAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHRRRYLPEIHAKSFTQRSFAERM 829

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  +MLLQIHDELVFE PEEEI T  +++  
Sbjct: 830 AMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIATLEELVPS 889

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M+ A    + L VPLKV  K    W +
Sbjct: 890 IMDSA----VKLDVPLKVESKSGATWYD 913


>gi|332523957|ref|ZP_08400209.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
 gi|332315221|gb|EGJ28206.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
          Length = 887

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/991 (31%), Positives = 481/991 (48%), Gaps = 127/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        R   GL  NAI GF  ML  +++  +    
Sbjct: 7   MENKNKLLLIDGSSVAFRAFFALYNQIDRFRNQSGLHTNAIYGFHLMLDHMMKRVQ---- 62

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A G+P  ++  +EA
Sbjct: 63  PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGVPFYDLANYEA 122

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++ +K
Sbjct: 123 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLKEK 182

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNI   PG+                       +I +K   +
Sbjct: 183 MGLTPEQFIDLKALMGDKSDNI---PGVT----------------------KIGEKTGLK 217

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + EY                      LE +     N            F     +    
Sbjct: 218 LLHEYG--------------------SLEGIY---ANID---------HFKASKMKENLI 245

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D + A +   +  INT     I +E  I +   +         D  +    E    +L 
Sbjct: 246 NDKEQAFLSKTLATINTDAPITIGLEDLIYQGPNV---------DALAAFYDEMGFVQLR 296

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                +L    +   +Y ++++    + +           F+I+ D    +H + I  A 
Sbjct: 297 TALKTQLPSSSVIEMNYQEVIDNVTDEMF----AEDSFFYFEILKDN---YHREAIT-AF 348

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +  +Q+      +                 +  L  ++L   K  F         ++ K 
Sbjct: 349 AWGNQE-----AIYVSQNP--------ELLRQPLFTKVLE--KPIF--------TYDFKR 385

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L+  GI +     D  L +Y+L S    +++A+IA+   S + +       K  K 
Sbjct: 386 AKVLLNHLGIEIPEAAFDARLANYLL-SNVDDNELATIARLHTSISLESDEAIYGKGVKR 444

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           + P   +    +  H      V+     ++  KL       +Y +++ P+ +V+++MEI 
Sbjct: 445 AFPAKDL----LFSHLARKVAVLAASKPVMLEKLADNGQSDLYYKIELPLANVLAKMEIA 500

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L +++ +    + +L + IYDL+GE+FN++SPKQLG ILF K++ P     K
Sbjct: 501 GIKVNKQTLMEMAEQNRNVIDALTQEIYDLAGEEFNINSPKQLGSILFEKMQLPLTMTKK 560

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I +  + +HT Y   
Sbjct: 561 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYLIGLQDYIMEDGK-IHTRYVQD 619

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD-YSQIELRILAHIAKIT 765
            T TGRL+S +PNLQNIPI+ + G+ IR+AF       ++ +  YSQIELR+LAHI+   
Sbjct: 620 LTQTGRLSSTDPNLQNIPIRMEQGRLIRKAFTPSSDDSVLLSSDYSQIELRVLAHISGDE 679

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F N+ DIH   A  +FG+  E  V+P  RR+AK +NF I+YGIS F L+  L I 
Sbjct: 680 HLIAAFNNNADIHTATAMRVFGIEKETDVTPNDRRNAKAVNFGIVYGISDFGLSNNLGIS 739

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A DYI  YF R+PGI  Y++      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 740 RKKARDYIDTYFERYPGIKAYMDSVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 799

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L D     KMLLQ+HDE+V EVP +E+ T  Q++
Sbjct: 800 RTAINSPIQGSAADILKIAMINLDKALADRAFKAKMLLQVHDEIVLEVPNQELVTVRQLV 859

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              ME A    ++L VPL+ +     +W E 
Sbjct: 860 KEIMEDA----VDLAVPLRADENSGQSWYEA 886


>gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
 gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
          Length = 886

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/988 (30%), Positives = 476/988 (48%), Gaps = 119/988 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S ++RAF+A            GL   AI GF  ML  +L+  + ++ 
Sbjct: 1   MAKQ--LLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDA- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR E Y DYK +R K P  L+ QLP VR   +A G+ A E+  +EA
Sbjct: 58  ---ALVAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     ++ GF   I++ D+DL QL +  T +  T +     E+    ++ +K G
Sbjct: 115 DDIIGTLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                                 +    Y     L+   G+  +     ++I +K     I
Sbjct: 175 ----------------------VTPRQYIDVKALM---GDSSDNYPGVTKIGEKTAVSLI 209

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            EY                                   L    + +   K   R     +
Sbjct: 210 QEYG---------------------------------SLDGLYENIAAMKKSKRKENLIN 236

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            +    E   L     +    A      +D   +    ++L D   +++ +   ++L  +
Sbjct: 237 EEKIARECQDLATIRRD----APLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQ 292

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             +  +Q       Y  +   +D    V +L    +  F++     +   S      I  
Sbjct: 293 --EGGAQVDQAPIEYQVL--DEDNMALVDQLGA--TVCFQLEMPDANYHESPLAGFVI-- 344

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                D  + + +   DL                   + LKK  E+    K   N K   
Sbjct: 345 ----GDGKWWLVSRNADL----------------LTTAPLKKLLEDPAVEKDVFNAKAQL 384

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSI 528
           + LHR G+ + G + D++L SY+L++  +++D+  +A     +      +   K  K +I
Sbjct: 385 VGLHRLGVDLAGVDFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAI 444

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D     H  + +  I  L   L  +L   + L +YE +++P+  V++ MEITGI
Sbjct: 445 PAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGI 501

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D   LK++ +++ +    LE+ IY  +GE+FN++SPKQLG ILF K+K P   KTKTG
Sbjct: 502 HVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPKQLGVILFEKMKLPVIKKTKTG 561

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +      PI+++IL +RQ+SK++STY   L   I++  Q++HT Y    T
Sbjct: 562 Y--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++ + G++IRRAF    P  K+ S+DYSQ+ELR+LAH+     +
Sbjct: 620 ATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIFSSDYSQVELRVLAHVTGDKNM 679

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
              F    DIH   A  IF + + ++V+P MRR AK +NF I+YGIS + LA  + + R 
Sbjct: 680 QADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNIHVSRP 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I+ YF  FPG+ +Y+       +Q GYVET+  RR +  EI++   + R+  ER 
Sbjct: 740 QAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHRRRYLPEIHAKSFTQRSFAERM 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  +MLLQIHDELVFE PEEEI T  +++  
Sbjct: 800 AMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIATLEELVPS 859

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M+ A    + L VPLKV  K    W +
Sbjct: 860 IMDSA----VKLDVPLKVESKSGATWYD 883


>gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
 gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
          Length = 880

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/983 (29%), Positives = 463/983 (47%), Gaps = 119/983 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L L+DG S + RAFYA P ++    GL  NAI GF N+++K L   +     +HFAV
Sbjct: 5   EKKLMLIDGHSILNRAFYALPDMTNSK-GLHTNAILGFLNIMFKFLDEEK----PTHFAV 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+E++ +YK  R  +PE L  Q+P+++   +A  IP +  +G+EADD++ T
Sbjct: 60  AFDLSAPTFRHEMFKEYKGTRKPMPEELREQVPVIKEVLKAMDIPLMMEEGYEADDLLGT 119

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
            + I EKEG+ V IIS D+DL+QL +    +     +      E    + V++ +G    
Sbjct: 120 MSVIGEKEGYQVRIISGDRDLLQLATENVQIRIPKTKGGGNVVEDYFAKDVMETYG---- 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
                                +  +    +    G+  + +     I +K   + I E+ 
Sbjct: 176 ---------------------VTPREFIDMKALMGDASDNIPGIPGIGEKTASKIIKEFK 214

Query: 238 --ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A                  +E ++ +     +L  F      +K +  +      +
Sbjct: 215 SIENAY---------------EHIEEVMPKRA-KNKLEEFYDQGVLSKELATIKLDCPIE 258

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
            +  +    DI T E   +  + E       K+       +   + +          E  
Sbjct: 259 LSFEDAKFNDIFTGEAYQLLKQLEF------KSVLKKFDGEHGEEFSVNLKKVFELDEAD 312

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q  S+      +   + + ++       +E   +  F+                   T D
Sbjct: 313 QIFSRAKKCEAAGLAVYHEQENTFLGLCIEGKETFLFQTE--------------GFLTRD 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                + ++      +S+             KE L  L    E++               
Sbjct: 359 YLMGQAGELYRTVPRVSM----------LNVKEFLDEL-SLSEDD--------------- 392

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
                   +   D  L +Y+++  +S+++   I++ +L      +KE+L  RK SI  + 
Sbjct: 393 --------KSIFDAALAAYLINPLKSTYEYDDISRDYLGIMLPSKKELLDKRK-SIFEEG 443

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
               + ++     + V       LR KL    +L +YE ++ P +  +  ME+ GI +D+
Sbjct: 444 KLLPEGEQIIGYEAYVACACIEPLRKKLTETGMLSLYEEIEIPTMVALHDMEVRGIHVDR 503

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             LK+   ++   +  L E IY  +GE+FN++SPKQLG +LF  +K   G KTKTG   +
Sbjct: 504 KALKEYGDQLIGRIEELRELIYKEAGEEFNINSPKQLGVVLFEHMKLEGGKKTKTGY--S 561

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T+ D+ +      PII  ILE+RQL+K+KSTYAD L N+I    +R+H  ++   T TGR
Sbjct: 562 TSVDVLEKIEHLYPIISYILEYRQLTKLKSTYADGLANYI-GDDERIHGKFNQTITATGR 620

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++S EPNLQNIP + +LG+ IR+ F+       + ADYSQIELR+LAH++    L   +E
Sbjct: 621 ISSTEPNLQNIPARVELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSGDKNLIHAYE 680

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   A+E+FGV I++VS   RR AK +NF I+YG+S F L+  L+I R +A +YI
Sbjct: 681 MEQDIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQDLKITRKQAQEYI 740

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF  +P + EY+ +     ++ G+V T+F R     E+ S     RN  ER A+N+PI
Sbjct: 741 DKYFETYPKVKEYLNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQRNFGERVAMNSPI 800

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI V+  L+  KL ++++LQIHDEL+ E  + E+     I+   M  A 
Sbjct: 801 QGSAADIIKIAMIRVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAA 860

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
                L VPL ++I   N+W E 
Sbjct: 861 ----KLSVPLSIDIHTGNSWYEA 879


>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna
          Length = 605

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/620 (40%), Positives = 375/620 (60%), Gaps = 20/620 (3%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+ D+Y  I++ + ++ W+ KLE     +F   TD++D   +  + ++ +         
Sbjct: 1   MISYDNYVTILDEETLKAWIAKLEKAPVFAFATATDSLDNISANLVGLSFAIEPGV-AAY 59

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             V   ++D                +  L  LK   E+E  LK+G N+KYD+ +L  YGI
Sbjct: 60  IPVAHDYLDAP---------DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGI 110

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537
            +RG   D ML SY+L+S    HD+ S+A++WL +     +EI    K+ +  ++I+  +
Sbjct: 111 ELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEE 170

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              +A E+++V LQL L + P L   K  L+V+E ++ P++ V+S++E  G++ID  +L 
Sbjct: 171 AGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLH 230

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
             S E++  L  LE+  ++++GE+FNLSS KQL  ILF K       KT  G   T+ + 
Sbjct: 231 NHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEV 290

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S 
Sbjct: 291 LEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSST 349

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    D
Sbjct: 350 DPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKD 409

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  YF
Sbjct: 410 IHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYF 469

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAINAP+QG+A
Sbjct: 470 ERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTA 529

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME       
Sbjct: 530 ADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCT---- 585

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V +    NW + +
Sbjct: 586 RLDVPLLVEVGSGENWDQAH 605


>gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 887

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/988 (28%), Positives = 477/988 (48%), Gaps = 124/988 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             + L+DGSS  +RAF++   L R    DGL  NA+  F  ML  +L   +     +H  
Sbjct: 4   KKIVLLDGSSLAFRAFFSILDLERFKNKDGLHTNALFSFNRMLENILDQFQ----PTHIL 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD P  TFR + + +YK NR K P     QLP  R+    +GI   ++  +EADDII 
Sbjct: 60  VAFDQPGPTFRTKQFEEYKGNRQKTPSEFKEQLPYFRVLLDGYGIQYYDMADYEADDIIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T +  A+ +   V +IS DKDL QL +    +Y T K     E    E + +K+ + P +
Sbjct: 120 TLSRQADSDD-EVIVISGDKDLTQLATDNVTVYITRKGVSELEAYTPEVIREKFDLEPLQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GDS DN PGI                          RI +K   + + ++  
Sbjct: 179 IIEMKGLMGDSSDNYPGIT-------------------------RIGEKTALKLLHQFNT 213

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +  +L             + L              K        N + +    +   
Sbjct: 214 VAEMYDRL-------------DELKPSKM---------KENIINDKANALMSRDLAEIIT 251

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P+  ++     KG   +  +D    ++ + F +     + + +E              
Sbjct: 252 NVPLEKNLEDIAYKGKQTDLLMDFYRQMQFNSFLTQLQAQTGLEAEAE------------ 299

Query: 359 SQYPINNDSYTKI-VNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            + P +   Y  I V+         +       +  I     +    + I +        
Sbjct: 300 -EVPADLPLYQVIEVDQVQADHLPDRA------ALYIEMLEENYHMGQVIGL-------- 344

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                    ++ DL  H    +     +        K +  +    KI  + K D+++L 
Sbjct: 345 ---------VWQDLDSHEIYLADWDQAIQSP---AFKAWLADASNQKILFDSKRDQVILA 392

Query: 478 RYGISMRGFE-DIMLMSYVLDSGR--------SSHDIASIAQKWLSYTRKEILKSRKSSI 528
             G+ + G + DIM+ +Y++D+          +++D+ S+ +    Y      K  K ++
Sbjct: 393 NAGLDLAGIDFDIMIANYLIDTHLAKELADMLTNNDMPSLVK----YDEAVYGKGAKQAV 448

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P      +++ +H       +  L   L  +L    +  +Y+ ++ P+  V+++MEI G+
Sbjct: 449 P----DSAELNDHLANKVKAMGLLVEPLTQQLKDLHMWDLYQTIEMPLARVLARMEIQGV 504

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D  +L   +  + + L  +E  IYDL+GE+FN++S KQLG ILF KL+ P   KTKTG
Sbjct: 505 KVDAQILADKNQALLERLAQMEAEIYDLAGEEFNINSVKQLGVILFEKLELPIIKKTKTG 564

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +     +PII  ILE+RQ+SK++ TY   LP +I +  + +H+ +    T
Sbjct: 565 Y--STAADVLEKLADKHPIIPAILEYRQISKLQGTYLAGLPTYIKEDGK-IHSRFVQTLT 621

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S +PNLQNIP + + G++IR+AF+ +    +L  ADYSQIELR+LAHIA+   +
Sbjct: 622 QTGRLSSADPNLQNIPARIEEGRRIRQAFVPAHEGWQLFGADYSQIELRVLAHIAQDQHM 681

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKV-SPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
              F++  DIH   A  +FG++ + V    +RR AK +NF I+YGIS + L+  L IPR 
Sbjct: 682 IAAFKSGEDIHEATARRVFGLDPDTVIDANLRRQAKAVNFGIVYGISDYGLSNNLNIPRK 741

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            A  +I+ YF ++P IH+++E      ++ GYVET+F RR +  +I++   +IR+  ER 
Sbjct: 742 HAKAFIENYFEKYPDIHQFMEDIVAEAKEKGYVETLFKRRRYLPDIDASNFNIRSFAERT 801

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N+PIQG+AADI + AM+ +  +L++  L +++LL +HDE++ E P EE+   S ++  
Sbjct: 802 AMNSPIQGTAADIIKIAMVRIQDALDEKGLQSRLLLSVHDEVILEGPAEEMEVLSDLVPD 861

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME      + L VPLKV    +N+W E
Sbjct: 862 IMESC----VELDVPLKVEYNQANDWYE 885


>gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
 gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
          Length = 908

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/978 (27%), Positives = 446/978 (45%), Gaps = 102/978 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  L+++ +     SH A 
Sbjct: 20  PTLMLLDGNSLAFRAFYALPAENFKTQGGLTTNAVYGFTAMLINLIRDEQ----PSHIAA 75

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E YP+YK  R   P+    Q+ + +    A GI  +   GFEADDIIAT
Sbjct: 76  AFDVSRQTFRKEKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEAGFEADDIIAT 135

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE EG  V +++ D+D +QLVS    +    K      +   E V +K+G+ P + 
Sbjct: 136 LATQAEGEGHRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVQEKYGLTPAQY 195

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL                          G+  + L     + +K   + I EY   
Sbjct: 196 PDFAALR-------------------------GDPSDNLPGIPGVGEKTATKWIAEYGSL 230

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             L         +V          ++   G  L +    L    L   +           
Sbjct: 231 QGL-------VDNVD--------KVKGKVGDALRA---HLSSVVLNRELTELVKDVPLAQ 272

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P  L +   +   I    +      ++   F +L+    ++      Q   L+      
Sbjct: 273 TPDTLRMQPWDRDHIHRLFDDLEFRVLRDRLFDTLASADPEVEEGFDVQGEALQA----- 327

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                            +  W+ +          ++ + + AF S   A+ I     +  
Sbjct: 328 ---------------GTLAPWLAENSDGRRFGLAVVGNHL-AFDSDATALTIVASGGEG- 370

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                             D+TG +   +     L  +  + H  K  H  K     L   
Sbjct: 371 ---------------RYIDTTGLDPDDE---KALASWLADPHVPKALHEAKLAIHDLQGR 412

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS--DS 536
           G ++ G   D  L +Y++  G+ S  +  ++ ++L    +     ++    +D     D 
Sbjct: 413 GWTLAGVTSDTALAAYLVRPGQRSFALDDLSLRYLKRELRADNPEQQQLSLLDDSDGVDD 472

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           Q  +  +  ++ ++ L   L  +L       +   ++ P+  V++++E  GI +D ++L 
Sbjct: 473 QAVQTLLLRASAVVDLADALDEELARIDSSALLGNMELPVQRVLAELETAGIAVDLEMLS 532

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            + +E +  +    E  Y + G++ NL SPKQL  +LF +L+ P   +TKTG        
Sbjct: 533 GLQSEFADQIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADAL 592

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
               +   +P ++++L  R  +++K T  D L N +     R+HT ++     TGRL+S 
Sbjct: 593 QSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNAVASDG-RIHTTFNQTIAATGRLSST 650

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+AH+++   L + F    
Sbjct: 651 EPNLQNIPIRTEAGRRIRDAFVVGDGYGELMTADYSQIEMRIMAHLSRDEGLIEAFNTGE 710

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+  F V I++V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +++Y
Sbjct: 711 DLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMEQY 770

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+    +  R++GY  T+FGRR +  E++S    +R   ERAA+NAPIQGS
Sbjct: 771 FARFGGVRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPIQGS 830

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI+V ++++D  L ++ LLQ+HDEL+FEV + E  T   ++   M  A    
Sbjct: 831 AADIIKVAMINVDQAIKDAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGSAYA-- 888

Query: 956 INLRVPLKVNIKVSNNWQ 973
             L VPL+V++    +W 
Sbjct: 889 --LDVPLEVSVGFGRSWD 904


>gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 916

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/980 (26%), Positives = 436/980 (44%), Gaps = 103/980 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++       +HFA
Sbjct: 26  RPRLLLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASMLANTLRDE----APTHFA 81

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    T+R+E +P+YKANR K P+    Q+ L+     A  +P   + GFEADD+IA
Sbjct: 82  VAFDVSRKTWRSEEFPEYKANRSKTPDEFKGQVELIGELLDAMNVPRFAVDGFEADDVIA 141

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T T  AE EGF V I + D+D  QLVS  T +    K          E V +K+G+ P +
Sbjct: 142 TLTVQAEAEGFDVRIFTGDRDSFQLVSDRTTVIYPTKGVSEVTHYTPEKVQEKYGLTPSQ 201

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN   +PG                         + +K   + I ++  
Sbjct: 202 YPDFAALRGDPSDN---LPG----------------------IPGVGEKTAAKWINQFG- 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHL--ILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                + L    E+  G    +F   LE  KL  R+        
Sbjct: 236 -------------------SFDELVARAEEVKGKAGQNFRDHLESVKLNRRLTAMVTDVE 276

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                  L     +   +A+  +          +     D  +  ++   PQ        
Sbjct: 277 LPKGVADLAREPYDRGAVALVLDTLEIRNPSLRERLLAVDPGAAEDTAPAPQAGVEIDG- 335

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++   ++  W+ +                    ++P+ +A      
Sbjct: 336 -------------TVLGAGELAPWLAE------------------HGTEPLGVATVDSWA 364

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +     +          + +  +   +   +    +  +    K+ HN K    V 
Sbjct: 365 LGTGNVSEVALAAAGGAAAWFEPSALDEADERAWAA---WIADPDRPKVLHNAKGAMRVF 421

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             +G S+ G   D  L +Y++  GR S  + +++ ++L    +E+  +  +   +   +D
Sbjct: 422 PEHGWSIAGVTMDTALAAYLVKPGRRSFALDALSVEYLH---RELAPAAAADGQLAFGAD 478

Query: 536 SQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              +  A+   +  +L L      KL       +  +++ P   +++++E  GI  D+D 
Sbjct: 479 DTAEAEALMTQARAVLDLGDAFAEKLDEVGARELLHQVELPTSALLARLERHGIAADRDH 538

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  + +  +    +  +   G +FNL SPKQL ++ F +L  P   KTKTG      
Sbjct: 539 LEAMEQQFAGAVQQAVKEAHASVGHEFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDAD 598

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                    ++ +   +L  R+ ++++ST  + L   I     R+HT +S     TGRL+
Sbjct: 599 ALAWLAAQTEHELPVIMLRHREQARLRST-VEGLIKTIGADG-RIHTTFSQTVAATGRLS 656

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQN+P++TD G+ IR  F+     + L++ADYSQIELR++AH+++   L + F +
Sbjct: 657 STDPNLQNVPVRTDEGRAIRHGFVVGEGFEALMTADYSQIELRVMAHLSEDAGLIEAFTS 716

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  VA+++FGV    V  +MRR  K +++ + YG+S F L+ QL I   EA   + 
Sbjct: 717 GEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPGEARGLMD 776

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +Y+ +  +  R  GY ET+ GRR +  ++NS     R   ER A+NAPIQ
Sbjct: 777 TYFERFGGVRDYLRRVVDEARATGYTETMLGRRRYLPDLNSDNRQRREAAERMALNAPIQ 836

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM++V ++L +  LA++MLLQ+HDE+V E+   E      ++   M  A  
Sbjct: 837 GTAADIVKVAMLNVDRALTEAGLASRMLLQVHDEIVLELAPGERDRVETLVRAQMSAAA- 895

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
              +LR PL V++ V  NW 
Sbjct: 896 ---DLRAPLDVSVGVGQNWD 912


>gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1]
 gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1]
          Length = 908

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/978 (27%), Positives = 446/978 (45%), Gaps = 102/978 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  L+++ +     SH A 
Sbjct: 20  PTLMLLDGNSLAFRAFYALPAENFKTQGGLTTNAVYGFTAMLINLIRDEQ----PSHIAA 75

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E YP+YK  R   P+    Q+ + +    A GI  +   GFEADDIIAT
Sbjct: 76  AFDVSRQTFRKEKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEAGFEADDIIAT 135

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE EG  V +++ D+D +QLVS    +    K      +   E V +K+G+ P + 
Sbjct: 136 LATQAEGEGHRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVQEKYGLTPAQY 195

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL                          G+  + L     + +K   + I EY   
Sbjct: 196 PDFAALR-------------------------GDPSDNLPGIPGVGEKTATKWIAEYGSL 230

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             L         +V          ++   G  L +    L    L   +           
Sbjct: 231 QGL-------VDNVD--------KVKGKVGDALRA---HLSSVVLNRELTELVKDVPLAQ 272

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P  L +   +   I    +      ++   F +L+    ++      Q   L+      
Sbjct: 273 TPDTLRMQPWDRDHIHRLFDDLEFRVLRDRLFDTLASADPEVEEGFDVQGEALQA----- 327

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                            +  W+ +          ++ + + AF S   A+ I     +  
Sbjct: 328 ---------------GTLAPWLAENSDGRRFGLAVVGNHL-AFDSDATALTIVASGGEG- 370

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                             D+TG +   +     L  +  + H  K  H  K     L   
Sbjct: 371 ---------------RYIDTTGLDPDDE---KALASWLADPHVPKALHEAKLAIHDLQGR 412

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS--DS 536
           G ++ G   D  L +Y++  G+ S  +  ++ ++L    +     ++    +D     D 
Sbjct: 413 GWTLAGVTSDTALAAYLVRPGQRSFALDDLSLRYLKRELRADNPEQQQLSLLDDSDGVDD 472

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           Q  +  +  ++ ++ L   L  +L       +   ++ P+  V++++E  GI +D ++L 
Sbjct: 473 QAVQTLLLRASAVVDLADALDEELSRIDSSALLGNMELPVQRVLAELETAGIAVDLEMLS 532

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            + +E +  +    E  Y + G++ NL SPKQL  +LF +L+ P   +TKTG        
Sbjct: 533 GLQSEFADQIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADAL 592

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
               +   +P ++++L  R  +++K T  D L N +     R+HT ++     TGRL+S 
Sbjct: 593 QSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNAVASDG-RIHTTFNQTIAATGRLSST 650

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+T+ G++IR AF+      +L++ADYSQIE+RI+AH+++   L + F    
Sbjct: 651 EPNLQNIPIRTEAGRRIRDAFVVGDGYGELMTADYSQIEMRIMAHLSRDEGLIEAFNTGE 710

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+  F V I++V+ ++RR  K +++ + YG+S + L+ QL+I   EA + +++Y
Sbjct: 711 DLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMEQY 770

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+    +  R++GY  T+FGRR +  E++S    +R   ERAA+NAPIQGS
Sbjct: 771 FARFGGVRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPIQGS 830

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI+V ++++D  L ++ LLQ+HDEL+FEV + E  T   ++   M  A    
Sbjct: 831 AADIIKVAMINVDQAIKDAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGSAYA-- 888

Query: 956 INLRVPLKVNIKVSNNWQ 973
             L VPL+V++    +W 
Sbjct: 889 --LDVPLEVSVGFGRSWD 904


>gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
 gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
          Length = 871

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/982 (29%), Positives = 457/982 (46%), Gaps = 123/982 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              + L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L   + E    +  V
Sbjct: 2   REKIVLIDGHSILNRAFYGVPDLTN-SEGLHTNAVYGFLNIMFKILDEEKPE----YLTV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+E+Y +YK  R  + E L  Q+P+++   +A  I  IE  G EADD++ T
Sbjct: 57  TFDVHAPTFRHEMYQEYKGTRKPMAEELRQQVPVIKEVLKAMNIEIIEQAGLEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
            ++  EKEG  V+IIS D+D +QL +    +     +      E      V +++G+ P 
Sbjct: 117 ISHQCEKEGLDVSIISGDRDTLQLTTEHIKVRIPKTKQGKTEIEDYLAADVKERYGVTPT 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DNI   PG+                        I +K   + I EY 
Sbjct: 177 EFIDVKALMGDTSDNI---PGV----------------------PGIGEKTATKIIQEYK 211

Query: 238 --ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A                  ++ L       PR    LK       +++   T   D
Sbjct: 212 TIENAY---------------EHVDELK-----PPRASKNLKEFWEQAQMSKTLATIRLD 251

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A       L+     N       E+ +    K +       +TS  + E T         
Sbjct: 252 AET--EFDLNGARHGNPYTKEAHELFQKLQFK-NLLGRFDVETSANDVEAT--------- 299

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD--AFHSKPIAIAIST 413
                       + ++     I++  ++ E           D  +     + P  I    
Sbjct: 300 ------------FCEVTGKAAIEKIFKEAEKAEKVGVAFSKDKGNVLPLFAHPSGIGRIA 347

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L   +  +  +                    +  E L+ +      +  +     +K   
Sbjct: 348 LCYTEKKTVTIPCDME---------------MDFETLAGMISGLAEKVKVFSMCGLKESL 392

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             L +         D+++ +Y+L+  +S +D   +A++ L     E              
Sbjct: 393 NYLPQA--KRENSFDVIVAAYLLNPLKSDYDYEDVAREQLGLLIDE-------------- 436

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             ++    A   +         L  K+    +  ++  ++ P++  + +ME  GI ++ +
Sbjct: 437 -KTEESTKACYEAYTAYMAVEPLNRKMEETGMTKLFREIEMPLVFTLYEMEQAGIHVEGE 495

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            LK    ++   ++ LE+ IYD++GE FN++SPKQLG ILF KL+ P   KTKTG   +T
Sbjct: 496 ALKAYGDQLGNRIVELEKEIYDMAGETFNINSPKQLGVILFEKLEMPHAKKTKTGY--ST 553

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A D+      + PI+  ILE+RQL+K+KSTYAD L   I     R+H  ++   T TGR+
Sbjct: 554 AADVLDKLAPEYPIVAKILEYRQLTKLKSTYADGLATFIGPDG-RIHGKFNQTITATGRI 612

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S EPNLQNIP++ +LG+ IR+ F+       + ADYSQIELRILAH +    L Q +  
Sbjct: 613 SSTEPNLQNIPVRMELGRLIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYRE 672

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           + DIHRM A+++F V  ++V+   RR+AK +NF I+YGIS F L+  L I R EAA YI+
Sbjct: 673 ARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAARYIE 732

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF  +PGI  ++++     ++ GY  T+FGRR    E+ S     R+  ER A+NAPIQ
Sbjct: 733 HYFETYPGIKTFLDQCVADAKEKGYAVTLFGRRRPVPELKSSNFMQRSFGERVAMNAPIQ 792

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AMI V   ++   + ++M+LQ+HDEL+ E  EEE+    +I+   ME A  
Sbjct: 793 GTAADIIKIAMIRVSDEMKKQNMKSRMILQVHDELLIEAAEEEVDEVKKILKEEMEHAA- 851

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
              +L VPL  ++    NW E 
Sbjct: 852 ---SLSVPLLADMHTGKNWYEA 870


>gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716]
          Length = 886

 Score =  667 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/988 (30%), Positives = 474/988 (47%), Gaps = 119/988 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S ++RAF+A            GL   AI GF  ML  +L+  + ++ 
Sbjct: 1   MAKQ--LLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDA- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR E Y DYK +R K P  L+ QLP VR   +A G+ A E+  +EA
Sbjct: 58  ---ALVAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     ++ GF   I++ D+DL QL +  T +  T +     E+    ++ +K  
Sbjct: 115 DDIIGTLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKL- 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                                G+    Y     L+   G+  +     ++I +K     I
Sbjct: 174 ---------------------GVTPRQYIDVKALM---GDSSDNYPGVTKIGEKTAVSLI 209

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            EY                                   L    + +   K   R     +
Sbjct: 210 QEYG---------------------------------SLDGLYENIAAMKKSKRKENLIN 236

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            +    E   L     +    A      +D   +    ++L D   +++ +   ++L  +
Sbjct: 237 EEKIARECQDLATIRRD----APLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQ 292

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             +  +Q       Y  +   +D    V +L    +  F++     +   S      I  
Sbjct: 293 --EGGAQVDQAPIEYQVL--DEDNMVLVDQLGA--TVCFQLEMPDANYHESPLAGFVI-- 344

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               D   + V      L+                  + LKK  E+    K   N K   
Sbjct: 345 ---GDGKRWLVSRNADLLTT-----------------APLKKLLEDPAVEKDVFNAKAQL 384

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSI 528
           + LHR G+ + G   D++L SY+L++  +++D+  +A     +      +   K  K +I
Sbjct: 385 VGLHRLGVDLAGVNFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAI 444

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D     H  + +  I  L   L  +L   + L +YE +++P+  V++ MEITGI
Sbjct: 445 PAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGI 501

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D   LK++ +++ +    LE+ IY  +GE+FN++SPKQLG ILF K+K P   KTKTG
Sbjct: 502 HVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPKQLGVILFEKMKLPVIKKTKTG 561

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +      PI+++IL +RQ+SK++STY   L   I++  Q++HT Y    T
Sbjct: 562 Y--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++ + G++IRRAF    P  K+ S+DYSQ+ELR+LAH+     +
Sbjct: 620 ATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIFSSDYSQVELRVLAHVTGDKNM 679

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
              F    DIH   A  IF + + ++V+P MRR AK +NF I+YGIS + LA  + + R 
Sbjct: 680 QADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNIHVSRP 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I+ YF  FPG+ +Y+       +Q GYVET+  RR +  EI++   + R+  ER 
Sbjct: 740 QAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHRRRYLPEIHAKSFTQRSFAERM 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  +MLLQIHDELVFE PEEEI T  +++  
Sbjct: 800 AMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIATLEELVPS 859

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M+ A    + L VPLKV  K    W +
Sbjct: 860 IMDSA----VKLDVPLKVESKSGATWYD 883


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/974 (28%), Positives = 456/974 (46%), Gaps = 104/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R FYA         G P   ++GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLFYALKNFKNSK-GEPSGMVSGFANFIYSL----KNEYKSDYIIFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR+EI P+YK NR   P  LL Q+P+     +  G  +I  + +EADDIIA+ 
Sbjct: 57  LDSKGKTFRSEIDPNYKTNRTPPPPELLAQIPICIKMIEKMGFVSISKEYYEADDIIASV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 +   V II+ DKDL QL+      +Y  + +   D    ++K+G+ P ++    
Sbjct: 117 VKSCNDKDIFVRIITQDKDLYQLIKDGKVSIYSPISKNDYDEAACLEKYGVKPSQIKDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+GN+E I  N S ++ ++ +  +LE  E A LS
Sbjct: 177 ALCGDSADNIPGVKGIGAKGAKNLLDEFGNIEEIYENLSFVRNERSKNLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +                          +L S  + L+   LI +   T +      EP++
Sbjct: 237 K--------------------------KLASLYEDLDLEDLIEKSVYTQE------EPLL 264

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             ++  E   +    +  +      +Q                                 
Sbjct: 265 RVLDYLERFELNSLLKKLKANPQNRNQNLGFKA--------------------------- 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T I++   +   ++ LE+    +F   T  ++A  +K +  +    + +   +F 
Sbjct: 298 -----TLILDENTLFDKLESLESESIIAFDTETTGLNAREAKIVGFSFCVSENE---AFY 349

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           V      L+V +            +I S+            IGHN+KYD  ++      +
Sbjct: 350 VPLNHTYLAVPSQISMQAAKRALGQIYSHF----------IIGHNLKYDFAIIEN-NFKL 398

Query: 484 RG---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                + D M+++++ +      ++  +A +   Y         K       +   +   
Sbjct: 399 TPPKKYADTMILAWLYNPS-LRVNMDDLALRLFDYKTLHFESVVKKGENFASVELEKACN 457

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +A E++ + L+ +L     L    LL +    +   I+V+ +ME  GI+++   L+ +  
Sbjct: 458 YAAEDAYITLRFYLYFLKNL-EPNLLKLGFESEFNFIEVLRKMEQNGIKLETQKLQNLMQ 516

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E  K +  L E IY L  +KFNL+SPKQ+GD+LF KLK PS  KTKTG   +T + + + 
Sbjct: 517 EFEKEIKLLSEEIYTLCDDKFNLNSPKQVGDVLFEKLKLPSAKKTKTGY--STDEKVLES 574

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPN 719
               +P++  IL +R+L+K+ STY + L    +     R+++ +    T TGRL+S EPN
Sbjct: 575 LIDKHPVVSKILAYRELAKLYSTYCEPLLKLALKDENSRIYSSFLQTGTATGRLSSKEPN 634

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP      +  +  FI+      IS DYSQIELR+LAH ++   L + F+N  DIH 
Sbjct: 635 LQNIPAHGQYAKDYKSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEAFKNDEDIHA 694

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A  IFG N    + + R  AK+INF +IYG+    L+  L+I  S A  YI++YF  F
Sbjct: 695 RTAIMIFGEN----NYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKTYIEKYFANF 750

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             I  + EK KN  + NG++ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAADI
Sbjct: 751 TSIKSFFEKVKNDAKINGFISTLSGRKRYFDFANA-KPMQVAMYERESINSILQGSAADI 809

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ ++K L+  K   +++LQIHDEL+FEV +E      +     ME      + L+
Sbjct: 810 IKLAMLELYKELDADK---RLILQIHDELIFEVKDELCEKFEKRARDIMEN----IVKLK 862

Query: 960 VPLKVNIKVSNNWQ 973
           V LK +  ++ NW 
Sbjct: 863 VNLKTSSSIAKNWG 876


>gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 622

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/616 (39%), Positives = 362/616 (58%), Gaps = 21/616 (3%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S           V 
Sbjct: 23  RNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAEIVGLSFSVEPG-HAAYVPVA 81

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
               D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G
Sbjct: 82  HRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNG 132

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541
              D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+
Sbjct: 133 IEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEY 191

Query: 542 AIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S 
Sbjct: 192 AAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSG 251

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++
Sbjct: 252 EIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL 311

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNL
Sbjct: 312 -AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNL 370

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR 
Sbjct: 371 QNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRA 430

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+P
Sbjct: 431 TAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYP 490

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ 
Sbjct: 491 GVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLI 550

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M         L+V
Sbjct: 551 KLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA----KLKV 606

Query: 961 PLKVNIKVSNNWQEEN 976
           PL   + V  NW+E +
Sbjct: 607 PLVAEVGVGENWEEAH 622


>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 878

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/985 (28%), Positives = 478/985 (48%), Gaps = 123/985 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N L L+DG+S +YRA+YAT     L +   G+  NA+ GF NM+ K++ +       +H 
Sbjct: 2   NTLVLIDGNSLMYRAYYATAYSGNLMKTSQGIFTNALYGFVNMMNKVMDDYH----HTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E    YK  R  +P+ +  Q+ L++      G+  +E+  +EADDII
Sbjct: 58  LVAFDAGKTTFRHEFLETYKDGRKPMPDEMRSQINLIKKYLDLLGVKRLELPTYEADDII 117

Query: 122 ATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
            T   + EK  F  + II+ DKDL+Q+    T ++ T K     E    E V +K+ + P
Sbjct: 118 GTLARLGEKADFEKIHIITGDKDLLQMADEKTTVHITRKGVTDIESFTPEAVFEKYELSP 177

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++V L+ L                          G+  + L     + +K   + + EY
Sbjct: 178 SQIVDLKGLM-------------------------GDPSDNLPGIPGVGEKTAIKLLKEY 212

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                 +E+L+    N   L   +K      +   +        
Sbjct: 213 Q--------------------TVENLV---ANTASLKGKMKEKVEANVEQALLCKRMATI 249

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ +  +    +G  +   I+    ++ + F  L     +   ++TP+        
Sbjct: 250 HTDVPLSVTFDDLLYQGPDVAGLIELFKEMEFNAF--LKKMKLQEVKDETPKAPVA---- 303

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         I + +++   + K   I    F+      +  H+  + IA+   ++
Sbjct: 304 -------------IIGSLEELNTKIFKHSAIHVEIFE-----ENYHHANILGIAVVNDEE 345

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                F                   K +           F  +E   K   ++K  ++ L
Sbjct: 346 SYYVPF----------------ELAKQS------EAFMTFLADEKIAKDIFDLKRSRVAL 383

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS----YTRKEILKSRKSSIPID 531
              G  +RG   D++L +Y+++    S++   +A  +      Y  +   K  K +I   
Sbjct: 384 MWQGFDLRGVAFDLLLATYIINPTNVSNEFKKVAMSYDYDDVLYDEEVYGKGAKRAIA-- 441

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              +SQ+  H+I+ +  +L+L      +L  +  L +YE ++ P+ DV+++ME  G+ +D
Sbjct: 442 --EESQIARHSIDIATAVLKLKETALEQLKEQDQLTLYEEMEMPLADVLAEMEFNGMALD 499

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L ++  ++   + +LE  IY+ +G  FN++SPKQLG++LF KL  P   KTKTG   
Sbjct: 500 LKTLDEMGQDLKGRITALENEIYEHAGMSFNINSPKQLGEVLFDKLSLPVIKKTKTGY-- 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T  D+ +     +PIIK+I+E+R L+K+ STY + L        + VHT ++ A T TG
Sbjct: 558 STNADVLEKLSDAHPIIKSIMEYRTLTKLYSTYIEGLKKACYSDGK-VHTIFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S+EPNLQNIPI+ + G+ IR+AF+       ++ ADYSQIELRILAHI+    L + 
Sbjct: 617 RLSSIEPNLQNIPIRLEEGRLIRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIH+  A ++F V+ E+++  +RR AK INF IIYG+S F L+  L I + EA  
Sbjct: 677 FKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAFGLSENLNITQKEAKK 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  Y   + GI++Y+E T    + +GY  T+F RR +  E++    ++R   ER A+NA
Sbjct: 737 YIDHYLKTYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKNYALRQFGERTAMNA 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI ++AMI V  ++++ ++ +++LLQ+HDEL+FEVP+EE+    +++  +ME 
Sbjct: 797 PIQGTAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEVPQEELDLMIELVTKTMED 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
                + L+VPLK +      W + 
Sbjct: 857 V----VKLQVPLKADYSYGPTWYDA 877


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/972 (30%), Positives = 491/972 (50%), Gaps = 111/972 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KL++  + +    + A+ F
Sbjct: 3   KFLVIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLIEEEKPD----YIAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y DYKA R  +PE L  Q+ L++     F I  +E++G+EADDII T +
Sbjct: 58  DKKAPTFRHKEYQDYKATRQAMPEELTEQVDLLKEIIDGFNIKTLELEGYEADDIIGTIS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            +AE++G  V +++ D+D +QLVS    +  + K             GI   +    +A+
Sbjct: 118 KLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKK-------------GITQMEEFDEKAV 164

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
                        I  +    L    G+  + +     I +K   + + E+     L + 
Sbjct: 165 LERYE--------ITPQQFIDLKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLQN 216

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L  L+  +   I          N   L    K L   K                 P+ +D
Sbjct: 217 LSQLKGKIKENIE---------NNKELAVMSKRLATIK--------------RDIPIEID 253

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 K    E  +         +F SL D   K N+ +      +++  K+       
Sbjct: 254 FEEYRVKDFNEEKLL---ELFNKLEFFSLIDNIKKKNNVEIVNNHKVQKWSKV------- 303

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
                     DI++ +  L+   + +F  +      +  +   IA S  +         +
Sbjct: 304 ----------DIRKLITLLQDSRNIAFYPL-----IYEGEIKKIAFSFGE---------D 339

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
           T++ID+          +    +     +K F      +K+ +            GI  + 
Sbjct: 340 TVYIDVFQIEDLKEIFEKEEFEFTTHEIKDFL-----VKLSYK-----------GIECKS 383

Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEH 541
            + D  +M+Y+L+   S++D+  + +K+L       +E+    +    +++I +  + ++
Sbjct: 384 KYIDTAVMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADY 443

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
                  +  L   L   +    +  +   ++ P+++V+  ME++G  +D+++LK++S +
Sbjct: 444 ICSRCVHLFDLREKLMNFIEEMDMKKLLLEIEMPLVEVLKLMEVSGFTLDKEVLKELSQK 503

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I   +  + + IY  +G +FN++SPKQL + LF KL  P   KTKTG + T ++ LEQ+ 
Sbjct: 504 IDDRIAEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL- 561

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              N ++ +I+E+RQL+K+KSTY D     +++   RVH+ +    T TGR++S EPNLQ
Sbjct: 562 VPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMDE-NNRVHSNFKQMVTATGRISSTEPNLQ 620

Query: 722 NIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G++IRRAFI       ++SADYSQIELR+LAH++    L + F N+ DIH  
Sbjct: 621 NIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLR 680

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+F V +EKV+P+MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF R+ 
Sbjct: 681 TAAEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYK 740

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ EYIEK   F ++NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSAADI 
Sbjct: 741 GVKEYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADII 800

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ V++  +  +L ++++LQ+HDELV +  ++E+    +I+  +ME      I L+V
Sbjct: 801 KMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVDIVKKILKENMENV----IKLKV 856

Query: 961 PLKVNIKVSNNW 972
           PL V I +  NW
Sbjct: 857 PLVVEIGIGPNW 868


>gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 622

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/616 (39%), Positives = 364/616 (59%), Gaps = 21/616 (3%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S             
Sbjct: 23  RNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG--------H 74

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
             ++ ++ H   D       + E+L+ L  + E+    K+G ++KYD  VL  YGI++ G
Sbjct: 75  AAYVPVA-HRGPDMPA-QLPSDEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNG 132

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541
              D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+
Sbjct: 133 IEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEY 191

Query: 542 AIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S 
Sbjct: 192 AAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSG 251

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++
Sbjct: 252 EIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL 311

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNL
Sbjct: 312 -AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNL 370

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR 
Sbjct: 371 QNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRA 430

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+P
Sbjct: 431 TAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYP 490

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ 
Sbjct: 491 GVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLI 550

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M         L+V
Sbjct: 551 KLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA----KLKV 606

Query: 961 PLKVNIKVSNNWQEEN 976
           PL   + V  NW+E +
Sbjct: 607 PLVAEVGVGENWEEAH 622


>gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH]
 gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH]
          Length = 872

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/977 (30%), Positives = 482/977 (49%), Gaps = 116/977 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++D   F++R FYA P L  K  G P   I GF N +  L ++   +    +     
Sbjct: 2   TLTIIDTFGFLFRNFYALPPLKSKK-GFPTGMITGFLNFVASLGRDFETD----YIVFTL 56

Query: 66  DYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D     TFR EI+ DYKANRP+ PE L  QLP+        G   +EI G+E+DDIIA+ 
Sbjct: 57  DSKEKDTFRKEIFKDYKANRPEAPEDLKTQLPVAIELINEMGFKMLEIPGYESDDIIASL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             +A  +G  V I+S DKD+ QL+      ++D +K+ +I+    I+K+G+ P+  +  Q
Sbjct: 117 AKLAASQGIKVKIVSHDKDMYQLIDDDKIVIFDPIKKVEINEAKCIEKFGVHPKDFINFQ 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ G+G KTAA L+ +Y  LEN+  +   IK                L 
Sbjct: 177 ALVGDSSDNIPGVKGVGVKTAAKLINQYKTLENLYDHIDEIKGA--------------LQ 222

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL+  + +  ++  L  L  +  +   L    K  E   ++       D D  +I    
Sbjct: 223 KKLLADKENAFLSRELVTLKTDLFDNINLEE-FKYPEINPILKVADKLIDLDITSI---- 277

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   +  G+ ++T++  +                                        
Sbjct: 278 --LERVKKDGLYVKTKMPDNQV-------------------------------------- 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                  I N K++ + + K+E     +F   TD+++  +   +  + +    K      
Sbjct: 298 -KFDAVLIENEKELFEIIDKIED-KIVAFDTETDSLE--NPNIVGFSFAYEKNK-AYYVP 352

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           +   ++ ++              K  L  ++K         IGHN+K+D  +L +YG+ +
Sbjct: 353 INHFYLGVT---------DQIPEKTALKAIQKIL---DKKVIGHNLKFDFKMLKKYGLEI 400

Query: 484 R-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQ 539
                D M+++++LD   S   + S+A+++L +     KE++  RK+     ++   +  
Sbjct: 401 PTPHADTMILAWILDPD-SPVGLDSVAKRYLDHQNIKFKEVIGKRKN---FSEVDIQEAA 456

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A E++ + L+L+ +L+ KL  E    + E ++ P I+++  +E  GI++D + ++++ 
Sbjct: 457 KYAAEDALISLKLYEILKEKLWEEVKWDI-ENIEMPFINLLIDIESQGIKLDIEYMQKLQ 515

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E ++ L +L + IY  +G +FN+ S KQL  ILF  LK P   KTKTG   +T + +  
Sbjct: 516 TETTEKLENLTQEIYRYAGSEFNIKSTKQLAHILFEVLKLPVKRKTKTGY--STDEKVLT 573

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR-TQRVHTFYSLASTMTGRLASLEP 718
              G +PII+ +LE+R+L K+ STY   L  +  K    +++T +    T TGRL+S  P
Sbjct: 574 SLKGTHPIIEKLLEYRKLDKLLSTYIIPLQEYAKKDPNHKIYTNFLQTGTATGRLSSKNP 633

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP  TD+   IR AF++   K+ +S DYSQIELR+LAH +K   L   F    DIH
Sbjct: 634 NLQNIPTSTDI--NIRDAFVAE--KEFVSLDYSQIELRLLAHFSKDEHLINAFLEDKDIH 689

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A +IFG N    + + R  AK+INF +IYG+ P +L+  + +   EA ++I++YF  
Sbjct: 690 LETAVKIFGENR---AKEYRPVAKSINFGLIYGMGPKKLSETINVSTKEAKEFIEKYFAS 746

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           FP +  ++E TK   R+ GYVET+  RR  +D   +  +      ER A+N   QGSAAD
Sbjct: 747 FPTVKTFLENTKIEAREKGYVETLLKRRRFFD-FAAANARTLANFEREAVNTIFQGSAAD 805

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP-EEEITTASQIIVHSMEKACLPKIN 957
           I ++AMI + +         KMLLQIHDEL+FE+   +E     +I+ +           
Sbjct: 806 IIKKAMIEIKQRF----PKAKMLLQIHDELIFEIDSRDEAYEYKKIMQNV--------FK 853

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPLKV I     W E
Sbjct: 854 LEVPLKVGISFGKRWGE 870


>gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 625

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/616 (39%), Positives = 362/616 (58%), Gaps = 21/616 (3%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  +   +    W+ K+      +F   T ++D   ++ + ++ S           V 
Sbjct: 26  RNYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-HAAYVPVA 84

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
               D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G
Sbjct: 85  HRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNG 135

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541
              D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+
Sbjct: 136 IEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEY 194

Query: 542 AIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S 
Sbjct: 195 AAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSG 254

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++
Sbjct: 255 EIATRLVTLEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL 314

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNL
Sbjct: 315 -AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNL 373

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR 
Sbjct: 374 QNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRA 433

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+P
Sbjct: 434 TAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYP 493

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ 
Sbjct: 494 GVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLI 553

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M         L+V
Sbjct: 554 KLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA----KLKV 609

Query: 961 PLKVNIKVSNNWQEEN 976
           PL   + V  NW+E +
Sbjct: 610 PLVAEVGVGENWEEAH 625


>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
 gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
          Length = 878

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/985 (28%), Positives = 478/985 (48%), Gaps = 123/985 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N L L+DG+S +YRA+YAT     L +   G+  NA+ GF NM+ K++ +       +H 
Sbjct: 2   NTLVLIDGNSLMYRAYYATAYSGNLMKTSQGIFTNALYGFVNMMNKVMDDYH----HTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR+E    YK  R  +P+ +  Q+ L++      G+  +E+  +EADDII
Sbjct: 58  LVAFDAGKTTFRHEFLETYKDGRKPMPDEMRSQINLIKKYLDLLGVKRLELPTYEADDII 117

Query: 122 ATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
            T   + EK  F  + II+ DKDL+Q+    T ++ T K     E    E V +K+ + P
Sbjct: 118 GTLARLGEKADFEKIHIITGDKDLLQMADEKTTVHITRKGVTDIESFTPEAVFEKYELSP 177

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            ++V L+ L                          G+  + L     + +K   + + EY
Sbjct: 178 SQIVDLKGLM-------------------------GDPSDNLPGIPGVGEKTAIKLLKEY 212

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                 +E+L+    N   L   +K      +   +        
Sbjct: 213 Q--------------------TVENLV---ANTASLKGKMKEKVEANVEQALLCKRMATI 249

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ +  +    +G  +   I+    ++ + F  L     +   ++TP+        
Sbjct: 250 HTDVPLSVTFDDLLYQGPDVAGLIELFKEMEFNAF--LKKMKLQEVKDETPKAPVA---- 303

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         I + +++   + K   I    F+      +  H+  + IA+   ++
Sbjct: 304 -------------IIGSLEELNTKIFKHSAIHVEIFE-----ENYHHANILGIAVVNDEE 345

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                F                   K +           F  +E   K   ++K  ++ L
Sbjct: 346 SYYVPF----------------ELAKQS------EAFMTFLADEKIAKDIFDLKRSRVAL 383

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS----YTRKEILKSRKSSIPID 531
              G  +RG   D++L +Y+++    S++   +A  +      Y  +   K  K +I   
Sbjct: 384 MWQGFDLRGVAFDLLLATYIINPTNVSNEFKKVAMSYDYDDVLYDEEVYGKGAKRAIA-- 441

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              +SQ+  H+I+ +  +L+L      +L  +  L ++E ++ P+ DV+++ME  G+ +D
Sbjct: 442 --EESQIARHSIDIATAVLKLKETALEQLKEQDQLTLFEEMEMPLADVLAEMEFNGMALD 499

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L ++  ++   + +LE  IY+ +G  FN++SPKQLG++LF KL  P   KTKTG   
Sbjct: 500 LKTLDEMGQDLKGRITALENEIYEHAGMSFNINSPKQLGEVLFDKLSLPVIKKTKTGY-- 557

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T  D+ +     +PIIK+I+E+R L+K+ STY + L        + VHT ++ A T TG
Sbjct: 558 STNADVLEKLSDAHPIIKSIMEYRTLTKLYSTYIEGLKKACYSDGK-VHTIFNQALTQTG 616

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S+EPNLQNIPI+ + G+ IR+AF+       ++ ADYSQIELRILAHI+    L + 
Sbjct: 617 RLSSIEPNLQNIPIRLEEGRLIRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEA 676

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F+   DIH+  A ++F V+ E+++  +RR AK INF IIYG+S F L+  L I + EA  
Sbjct: 677 FKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAFGLSENLNITQKEAKK 736

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  Y   + GI++Y+E T    + +GY  T+F RR +  E++    ++R   ER A+NA
Sbjct: 737 YIDHYLETYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKNYALRQFGERTAMNA 796

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI ++AMI V  ++++ ++ +++LLQ+HDEL+FEVP+EE+    +++  +ME 
Sbjct: 797 PIQGTAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEVPQEELDLMIELVTKTMED 856

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
                + L+VPLK +      W + 
Sbjct: 857 V----VKLQVPLKADYSYGPTWYDA 877


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/974 (29%), Positives = 473/974 (48%), Gaps = 96/974 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA P L R   G P   + GF N ++ +    + E    +    
Sbjct: 2   KTLTIIDTFGFFFRNYYALPQL-RNSQGFPTGLLTGFANFIYAI----KNEHDTDYVMFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D     FR+E+ P+YKANRP+ PE L  QLP+     +  G      +GFEADD+IA+ 
Sbjct: 57  LDSKGKNFRHELDPNYKANRPEAPEELKKQLPVAISWIEKMGFKCYSEEGFEADDVIASA 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              A++ G  V I++ DKDL QL+      +YD +K+ +ID E   +K+G+ P+K+    
Sbjct: 117 VKFAKRHGIKVRIVTHDKDLYQLIDDGRVVIYDPMKKIEIDSEKCFEKFGVYPDKINEYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           +L GD+ DNIPG+ GIG K A  LL ++G++E                NI    E     
Sbjct: 177 SLVGDTADNIPGVKGIGPKGAKKLLDDFGSVE----------------NIYANLERIA-- 218

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                                     PR  S L+    +  +++     D      +   
Sbjct: 219 -------------------------NPRSKSMLEEGRESAFLSKQLVRLDDSLNIADTFE 253

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                 +N  + I  E+++           L    S++ +E    K+         + P 
Sbjct: 254 AFYFPCDNPLVNIADELEKYE---------LRHMLSRVRNEALHVKI--------KEAPS 296

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           N      + + K +   ++ +E     +F   T+ +DA+++K +  + +  + +      
Sbjct: 297 NTFRAILVDDAKILFNVIEGIEEGSWVAFDTETNALDAYNAKIVGFSFALNEHE------ 350

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGIS 482
               ++ L+ H      G+    +E    LKK F       +G N+KYD  V+ + +G+ 
Sbjct: 351 --AYYVPLAHHYL--GVGEQIGMEEAKEALKKLF---KHKIVGQNLKYDLAVIENNFGLR 403

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           +   + D MLM+++L+   S+  + ++A+++ ++   +       +     +   +  E+
Sbjct: 404 LSSSYADTMLMAWLLNP-ESNVGLDTLAKRFFNHDMVKFKDVVSKNENFSHVPLDKACEY 462

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+L+  L   L   +LL + + ++ P I  + +ME  GI+ID    + +   
Sbjct: 463 ASEDAWMTLKLYNKLHDML-EPRLLEIAKEVEFPFILTLMRMEKEGIKIDGAYFEALLKR 521

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               + +L+  I+ L   +FNL+S +QLG +LF +L  P   KTKTG   +T +++    
Sbjct: 522 TDGAIDALKHEIFTLCDAQFNLNSTQQLGTVLFEQLGLPPVKKTKTGY--STDENVLNEL 579

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-QRVHTFYSLASTMTGRLASLEPNL 720
              +P I  ILE+R+L K++STY + L     +    RVHT +    T TGRL+S +PNL
Sbjct: 580 LDKHPSIAKILEYRELYKLRSTYIEPLLKLSKESPLGRVHTSFIQTGTSTGRLSSKDPNL 639

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP+KT LG+++R  F++     LI  DYSQIELR+LAH +    + + F +  DIH  
Sbjct: 640 QNIPVKTALGREVRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAFRDGKDIHYE 699

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++FG   E+ +   R  AK+INF ++YG+ P RL+  L I  +EA  YI+ YF  FP
Sbjct: 700 TALKLFG---EQEAASKRSVAKSINFGLLYGMGPKRLSETLGISMAEAKRYIESYFATFP 756

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I  Y+ +     +  GYVET+ GR+  +D  ++  +       R A+N   QGSAAD+ 
Sbjct: 757 TIKAYVMEVAEQAKTTGYVETLLGRKRFFDFEHA-NAMQYAGYLREAVNTVFQGSAADLI 815

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + +M  +  +L   +   K+LLQIHDEL+FEV E +  + +      ME+       LR+
Sbjct: 816 KLSMNKIMATLIHDE--AKLLLQIHDELIFEVVESQAQSFALEAQKVMEE----IYALRI 869

Query: 961 PLKVNIKVSNNWQE 974
           PLKV+I +  NW E
Sbjct: 870 PLKVSIAMGKNWGE 883


>gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
 gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
          Length = 912

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/980 (29%), Positives = 471/980 (48%), Gaps = 81/980 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L ++D   F +R+FYA P L  K +G P   + GFCN+L  L     K+   ++ A  
Sbjct: 2   NTLSVIDTFGFFFRSFYALPPLKNK-EGFPTGLLVGFCNLLQSLY----KDPSCTYLAFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            +      R +IY  YK NR   P+ LL QLP+     +  G   I I+G+EADD+IA+ 
Sbjct: 57  LEGGGENKRRQIYDAYKRNRQPPPQELLMQLPIAIEWIEKMGFLNISIEGYEADDVIASI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
             +A  +   V IIS DKDL QL+   T +YD + +  I     + K+G+ P+  +  Q+
Sbjct: 117 NKVANAQNIVVRIISHDKDLYQLIDENTYIYDPIGKRDIREAECLYKYGVNPKNFIDYQS 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILEYAETAR 241
           L GD+ DNI GI GIG K+A  L+  +G++E++         +   +    + E    A 
Sbjct: 177 LVGDTSDNIVGIKGIGAKSAQKLITHFGSIESLYERESELEEVVTPRIAHLLREGKNNAF 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDAANIE 300
           LS+KLV L  D+   I L   ++ + N   +++  LK  +   +I++V + ++  A    
Sbjct: 237 LSKKLVTLYDDLLENIDLSKCLMPESNPMLKILDELKKYDLKNIISKVQSPHERYA---- 292

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                   +  KGI    ++                                + ++  S 
Sbjct: 293 -----QKRSAQKGIGSLNDMP-------------------------------DVIESSSS 316

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
               +     + N   ++  +  + +     F   +D+++   +  +  +     +    
Sbjct: 317 AQSFSFKAHLLDNFTALEAVLDSIPSGAKIGFDCESDSLNMQEANLVGFSFCFDGE---- 372

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRY 479
                  ++ +  H      G      +    LK+ F    +  IGHN+K+D  L+ H  
Sbjct: 373 ----NAYYVPVGHHYL--GVGCQLTHTQAKIALKRIF---TYPLIGHNLKFDLSLIFHTL 423

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            +   G   D M++ ++ DS      +     KW ++T               +++ +  
Sbjct: 424 ELEHTGEIYDSMILGWLYDSIAPI-GLDKQMLKWFNHTMISFDSVVAKDENFSQVNIAAA 482

Query: 539 QEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            ++A E++    +L+  L     K     +L +  +L+ P I V+  ME  GI++D  LL
Sbjct: 483 TQYAAEDAIATFRLYHRLEEVFYKREWSSILELANKLEYPFIKVLLAMECEGIKVDIPLL 542

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  + S+++  L   I++L GE FNL+SP+QL  ILF +L   +G   K G   +T +
Sbjct: 543 ESLKEKASEHISQLSAQIFELCGETFNLNSPQQLAHILFNRLGLKAGRSVKGGL--STDE 600

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLA 714
                    +P+I  IL++R+++K+KSTY + L          R++T +  + T TGRL+
Sbjct: 601 RTLLAIIDAHPVIALILDYREVNKLKSTYIEPLLRFGSANDKHRIYTSFLQSGTATGRLS 660

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIP++ + G+KIR+AFIS     LIS DYSQIELR+LAH  K + L + F+  
Sbjct: 661 SKSPNLQNIPVRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDSSLIESFKQD 720

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AA +FGV   +++ Q R  AK+INF +IYG+   +LA  L+I   EA +YI+ 
Sbjct: 721 KDIHFETAARLFGV---ELAAQKRAIAKSINFGLIYGMGSKKLAQTLQISLKEAKNYIES 777

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP I  ++   K F+ +NGY +T+ G R ++D  N+      N   R  IN+  QG
Sbjct: 778 YFALFPTIKNFLNAQKEFLLENGYSQTLLGHRRYFDFKNATDFMKANF-LREGINSIFQG 836

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + +M  +HK         KMLLQ+HDEL+FE P+E+    +Q     M      
Sbjct: 837 SAADLIKLSMCEIHKRYGHSDF--KMLLQVHDELIFEAPQEKAHIYAQEAAQIMNH---- 890

Query: 955 KINLRVPLKVNIKVSNNWQE 974
              L VPLK  I +  NW E
Sbjct: 891 IYELEVPLKCGISIGKNWAE 910


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/989 (30%), Positives = 466/989 (47%), Gaps = 118/989 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLL---SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M +   L L+DG+S  YRAF+A        +  +GL  NA+ GF NM+  +L        
Sbjct: 1   MNERKKLVLIDGNSVAYRAFFALHSQLERMKNKNGLHTNALYGFHNMIDSVLTKEN---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR+  + DYKA R K P     Q+P +R     FGI   E++ FEA
Sbjct: 57  PSHVLVAFDAGNTTFRHSFFDDYKAGRSKTPGEFSEQMPYLRELLDGFGIKHYELENFEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     +   + V +IS D+DL QL      +  TVK     ++   E + ++  
Sbjct: 117 DDIIGTLATQVDPTIYDVVVISGDRDLTQLAKENVRVDITVKGVSELKEYTPESIHEEM- 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                                   GI       +    G+  + +   ++I +K   + +
Sbjct: 176 ------------------------GISPLQIIDMKGLAGDASDNIPGVTKIGEKTALKLL 211

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            EY     +                ++ L         +       + T  +++   T D
Sbjct: 212 KEYGSVEGIY-------------ENIDSLKKSKMKENLINE-----KETAFLSKKLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            D+    P+ + I+     G  +E  I     +  +   S  D T++ ++EQ  QK    
Sbjct: 254 TDS----PIKVGIDDLNFSGPNMEKLIAFYKEMDFNSHLSKLD-TAEYDAEQNNQK---- 304

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
                        SY  + +       +         +  +     +   S  I I    
Sbjct: 305 ----------EEISYNIVTD-------ITADMFRDDMALYVELMGDNYHTSPIICIGWGD 347

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             Q      +V     D                       K + + +   K   + K   
Sbjct: 348 DQQIYIAEPEVVFASDD----------------------FKNWAKEKETKKQVFDAKRTY 385

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSI 528
           + L R  + +     DI+L SY+L++  +S D++ +A +   Y          K  K +I
Sbjct: 386 VALRRQKVDITSISFDILLASYLLNTKDNSKDLSEVAMEHDYYDVSSDESVYGKGAKIAI 445

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P DK       +H       I  L   L   L       +++ ++ P+  V+++ME+TG+
Sbjct: 446 PEDK---KVTYDHVARKIKAIRILSKQLSDNLEKNVQTKLFDEMELPLSIVLAEMELTGV 502

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +++   L ++  E +  L  +E+ +Y+L+GEKFNL+SPKQLG ILF K+ +P   KTKTG
Sbjct: 503 KVNDKRLMEMKEEFAIRLNDIEQRVYELAGEKFNLNSPKQLGVILFEKMGYPVVKKTKTG 562

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +      PI+++ILE+RQ++KI+STY + L   I+K T ++HT Y     
Sbjct: 563 Y--STAVDVLEQLKEQAPIVEHILEYRQIAKIQSTYIEGLLKVIDKETGKIHTRYMQTIA 620

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIPI+ + G+KIR+AF+      K+ ++DYSQIELR+L H++    L
Sbjct: 621 QTGRLSSVDPNLQNIPIRLEEGRKIRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLL 680

Query: 768 YQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            + F    DIH   A  +FG++  E+VS +MRR AK +NF I+YGIS + L+  L I R 
Sbjct: 681 KEAFIEGQDIHSSTAMRVFGISSPEEVSSEMRRRAKAVNFGIVYGISDYGLSQNLGISRK 740

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  +I  YF ++PG+  Y+E      +  G+VET+F RR +  EINS   ++R+  ER 
Sbjct: 741 EAQRFIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFHRRRYLPEINSRNFNLRSFAERT 800

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDEL+FE PEEEI     ++V 
Sbjct: 801 AINTPIQGSAADIIKIAMIKMDERLKESKLKATMLLQVHDELIFEAPEEEIEELKALVVE 860

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            ME A    + L VPLKV+     +W E 
Sbjct: 861 VMEGA----VELSVPLKVDSNSGKSWYEA 885


>gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 677

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/731 (35%), Positives = 391/731 (53%), Gaps = 61/731 (8%)

Query: 252 DVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTEN 311
           DV +    E L+  + N   LI     L F   +N +          +E       ++ +
Sbjct: 2   DVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNELLEGSSGTVEAVELAGSAQASSSS 61

Query: 312 KGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKI 371
               +ET                                        S   I+   Y  I
Sbjct: 62  SHAEMET----------------------------------------SAVTIDRSQYETI 81

Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDL 431
           ++      W++KL+     +F   TD++D   +  + ++ +  D+       V   ++D 
Sbjct: 82  LDEASFNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAI-DEGIAAYVPVAHDYLDA 140

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIM 490
                +D          +L  LK   E++   K+G N+KYD  VL RYGI M+G   D M
Sbjct: 141 PEQLDRD---------WVLEQLKPILEDDAQAKVGQNLKYDASVLARYGIEMKGIKYDTM 191

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           L SYV +S    HD+ S+A ++L ++    ++I    K+ +  ++I   Q   +A E+++
Sbjct: 192 LASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDAD 251

Query: 548 VILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
           V L+L   L   +   EKL  VYE ++ P++ V+S++E TG+ ID   L   S EI+  L
Sbjct: 252 VTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARL 311

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             LE+  Y+++ ++FN++SPKQL  ILF K+  P   KT +G   T  + L+++   D P
Sbjct: 312 EELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELAL-DYP 370

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           + K ILE+R L+K+KSTY D LP  IN  T RVHT Y  A T TGRL+S +PNLQNIPI+
Sbjct: 371 LPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIR 430

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
            + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F +  DIH   AAEI 
Sbjct: 431 NEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIM 490

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA  Y+ +YF R+PG+ +Y+
Sbjct: 491 GVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYM 550

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           E T++     GYVETIFGRR+H  EI S     R   ERAAINAP+QG+AADI ++AM+ 
Sbjct: 551 EDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLL 610

Query: 907 VHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           V + +++      K+L+Q+HDELVFEV E  ++     +   ME A      L+VPL   
Sbjct: 611 VDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAA----ELKVPLVAE 666

Query: 966 IKVSNNWQEEN 976
               +NW + +
Sbjct: 667 AGHGDNWDQAH 677


>gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 620

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/616 (39%), Positives = 361/616 (58%), Gaps = 21/616 (3%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  +   +    W+  +      +F   T ++D   ++ + ++ S           V 
Sbjct: 21  RNYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAEIVGLSFSVEPG-HAAYVPVA 79

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
               D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G
Sbjct: 80  HRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNG 130

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541
              D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+
Sbjct: 131 IEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEY 189

Query: 542 AIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S 
Sbjct: 190 AAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSG 249

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++
Sbjct: 250 EIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL 309

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNL
Sbjct: 310 -AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNL 368

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR 
Sbjct: 369 QNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRA 428

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+P
Sbjct: 429 TAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYP 488

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ 
Sbjct: 489 GVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLI 548

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M         L+V
Sbjct: 549 KLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA----KLKV 604

Query: 961 PLKVNIKVSNNWQEEN 976
           PL   + V  NW+E +
Sbjct: 605 PLVAEVGVGENWEEAH 620


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/984 (27%), Positives = 435/984 (44%), Gaps = 110/984 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAFYA P  +     G   NA+ GF +ML  +L++ +     +H AV F
Sbjct: 13  LLLLDGHSLAYRAFYALPEENFSTTTGQTTNAVFGFTSMLVNVLRDEQ----PTHVAVCF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y DYKANR   P+    Q+ L+     A  +P + + G+EADD+IAT  
Sbjct: 69  DRSEPTFRHEEYADYKANRSASPDSFRSQMSLIYEMLDALRVPHLSLAGYEADDLIATLA 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             A  +   V +++ D+D +QLV     +  T        +   E V++K+ + P +   
Sbjct: 129 TQAAGQDMNVLVVTGDRDALQLVDDRVTVLMTRVGISNMTRFTPEAVLEKYELTPAQYPD 188

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A+ GDS DN                         L N   + +K   + I E+     
Sbjct: 189 FAAIRGDSSDN-------------------------LKNIPGVGEKTAAKWIREFG---- 219

Query: 242 LSRKLVMLRTDVPITIPLEHL-----ILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                            LE L      ++   G +L   L  +   + + ++      + 
Sbjct: 220 ----------------SLEELVNRIDEVKGKVGDKLRDHLDQVLMNRRLTQLMRDVPLER 263

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                 +   +  E   I    E   +  ++   F +L+    ++      + +      
Sbjct: 264 EVSALTIGQGDREEINKILDTLEFRGE--LRDRLFKTLASAEPEVEEGFEVEAVR----- 316

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI--STL 414
                          +   ++  W++ L    +                   +A   +  
Sbjct: 317 ---------------LGPGEVAGWLRALPEGRA------------------GLAFKGAYG 343

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                                        TLT+   + L+ +  +E   K  H+ K   L
Sbjct: 344 SGTGRIDSIAVAAPDGAGGGHGAAFIDPTTLTEADETALRAWLGDESRPKAVHDAKGPML 403

Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            L   G+ +RG   D  L +Y+   G+ +  +  + + +L    +   ++   +   D  
Sbjct: 404 ALWAQGMELRGLTCDTALAAYLAMPGQRTFLLEDLVRAYLQRELRGEAETGGQASLFDDE 463

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            D   +E     +  + +L   L   L      H+   ++ P++ V++++E  GI  D D
Sbjct: 464 DDDTARE-LGLRALAVRELADALEAFLEPRGGTHLMREVELPLVTVLAELERAGIAADGD 522

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
               + AE    +    E  +   GE+FNL SPKQL +ILF +L  P   KTKTG     
Sbjct: 523 YFSGLEAEFGAAVKQAVEAAHAAVGEQFNLGSPKQLQEILFVRLNLPKTKKTKTGYTTDA 582

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                     ++ +   +L  R  +K+K T  + L   I     R+HT ++     TGRL
Sbjct: 583 DALAWLAAQTEHELPTIMLRHRDQAKLKVT-VEGLVKEI-ADDGRIHTTFNQIVAATGRL 640

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+T  G++IR+ F+  P    L++ADYSQIELRI+AH++    L   FE
Sbjct: 641 SSEKPNLQNIPIRTVEGRRIRQGFVVGPGYETLLTADYSQIELRIMAHLSGDESLIAAFE 700

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D H+  AA +F +  E+V+ +MR   K +N+ + YG+S F LA QL IP  EA    
Sbjct: 701 SGHDFHKTTAARVFDIEPEQVTGEMRAKIKAMNYGLAYGLSDFGLAGQLNIPVQEAKALK 760

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF  F G+ +++       RQ+GY ETI GRR +  ++NS     R + ER A+NAPI
Sbjct: 761 EEYFEEFGGVRDFLNAIVAQARQDGYTETIMGRRRYLPDLNSDNRQRREMAERMALNAPI 820

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM++V  ++++  L ++MLLQ+HDELVFEV   E+ T  +++   M  A 
Sbjct: 821 QGSAADIIKVAMLNVQSAVKEAALGSRMLLQVHDELVFEVAPGELETLRELVTDRMNAA- 879

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
               +LRVPL+V++ V   W++  
Sbjct: 880 ---YSLRVPLEVSVGVGRTWEDAG 900


>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
          Length = 907

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/980 (29%), Positives = 460/980 (46%), Gaps = 103/980 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL+    E   +H A  F
Sbjct: 14  LMLLDGNSLAFRAFYALPTENFKTRGGLTTNAVYGFTAMLINLLR----EEAPTHIAAAF 69

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y  YKANR  IP     Q+ + +    A GI      GFEADD+IAT  
Sbjct: 70  DVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEADDLIATLA 129

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS    +    K      +   E VI+K+G+ P +   
Sbjct: 130 TQAENEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGVTPAQYPD 189

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL GD  DN+PGIPG+G KTAA  + +YG+L+ ++ N   ++  K  E +  +  +  
Sbjct: 190 LAALRGDPSDNLPGIPGVGEKTAAKWIVDYGSLQGLVDNVESVRG-KVGEALRTHLASVV 248

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  DVP+    + L L+  +  R+      LEF  L +R+   ++  AA  E 
Sbjct: 249 RNRELTELVKDVPLVQTSDTLRLQPWDRDRIHRLFDNLEFRVLRDRL---FEALAAAGER 305

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V       + +G  +E+        K +       + S +    T      +        
Sbjct: 306 VPEVDEGFDVRGGLLESGTVGRWLAKHAD----DGRRSGLAIVGTHLPHGGDATALAVAA 361

Query: 362 PINNDSY--TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              N  Y  T ++   D       L    +              +K     ++       
Sbjct: 362 ADGNGGYIDTAMLTPDDDDALAAWLADPDNP--------KALHEAKLAMHDLA------G 407

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILS--YLKKFFENEHFLKIGHNIKYDKLVLH 477
             + +  I  D ++       G+ + T + LS  YL++    E                 
Sbjct: 408 RGWTLGGITSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAET---------------- 451

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
                                 +    +             E+ K    ++ +   +   
Sbjct: 452 --------------------PEQEQFSLLD--------NVDEVDKQAIQTLILRARAVVD 483

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           +        ++I    LL   +L V+++L   E+               GI  D  LL +
Sbjct: 484 LAAALDAELDLIDSTSLLGEMELPVQQVLADMEK--------------AGIAADLRLLTE 529

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + ++    +    E  Y + G++ NLSSPKQL  +LF +L  P   +TKTG         
Sbjct: 530 LQSQFGDQIRDAAEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTKRTKTGYTTDADALQ 589

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                 ++P ++++L  R ++++K T  D L N +     R+HT ++     TGRL+S E
Sbjct: 590 SLFCKTEHPFLQHLLTHRDVTRLKVT-VDGLLNAVAADG-RIHTTFNQTIATTGRLSSTE 647

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK----KLISADYSQIELRILAHIAKITPLYQVFEN 773
           PNLQNIPI+T+ G++IR AF+         +L++ADYSQIE+RI+AH+++   L + F  
Sbjct: 648 PNLQNIPIRTNAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIMAHLSRDEGLIEAFHT 707

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  VA+  FG+ IE ++P++RR  K +++ + YG+S + LATQL+I   EA   ++
Sbjct: 708 GEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAYGLATQLKISTEEAKLQME 767

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF RF G+ +Y+       R++GY  T+ GRR +  E++S    IR   ERAA+NAPIQ
Sbjct: 768 QYFARFGGVRDYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQIREAAERAALNAPIQ 827

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AMI+V KSL+  KLA++MLLQ+HDEL+FEV   E      ++   M  A  
Sbjct: 828 GSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSA-- 885

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
               L VPL+V++    +W 
Sbjct: 886 --YPLDVPLEVSVGFGRSWG 903


>gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 618

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/616 (39%), Positives = 361/616 (58%), Gaps = 21/616 (3%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  +   +    W+  +      +F   T ++D   ++ + ++ S           V 
Sbjct: 19  RNYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-HAAYVPVA 77

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
               D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G
Sbjct: 78  HRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNG 128

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541
              D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+
Sbjct: 129 IEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEY 187

Query: 542 AIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S 
Sbjct: 188 AAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSG 247

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++
Sbjct: 248 EIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL 307

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNL
Sbjct: 308 -AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNL 366

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR 
Sbjct: 367 QNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRA 426

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+P
Sbjct: 427 TAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYP 486

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ 
Sbjct: 487 GVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLI 546

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M         L+V
Sbjct: 547 KLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA----KLKV 602

Query: 961 PLKVNIKVSNNWQEEN 976
           PL   + V  NW+E +
Sbjct: 603 PLVAEVGVGENWEEAH 618


>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN]
 gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923]
 gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I
 gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
 gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
 gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923]
          Length = 911

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/980 (29%), Positives = 460/980 (46%), Gaps = 103/980 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL+    E   +H A  F
Sbjct: 18  LMLLDGNSLAFRAFYALPTENFKTRGGLTTNAVYGFTAMLINLLR----EEAPTHIAAAF 73

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E Y  YKANR  IP     Q+ + +    A GI      GFEADD+IAT  
Sbjct: 74  DVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEADDLIATLA 133

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
             AE EG+ V +++ D+D +QLVS    +    K      +   E VI+K+G+ P +   
Sbjct: 134 TQAENEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGVTPAQYPD 193

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL GD  DN+PGIPG+G KTAA  + +YG+L+ ++ N   ++  K  E +  +  +  
Sbjct: 194 LAALRGDPSDNLPGIPGVGEKTAAKWIVDYGSLQGLVDNVESVRG-KVGEALRTHLASVV 252

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
            +R+L  L  DVP+    + L L+  +  R+      LEF  L +R+   ++  AA  E 
Sbjct: 253 RNRELTELVKDVPLVQTSDTLRLQPWDRDRIHRLFDNLEFRVLRDRL---FEALAAAGER 309

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V       + +G  +E+        K +       + S +    T      +        
Sbjct: 310 VPEVDEGFDVRGGLLESGTVGRWLAKHAD----DGRRSGLAIVGTHLPHGGDATALAVAA 365

Query: 362 PINNDSY--TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              N  Y  T ++   D       L    +              +K     ++       
Sbjct: 366 ADGNGGYIDTAMLTPDDDDALAAWLADPDNP--------KALHEAKLAMHDLA------G 411

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILS--YLKKFFENEHFLKIGHNIKYDKLVLH 477
             + +  I  D ++       G+ + T + LS  YL++    E                 
Sbjct: 412 RGWTLGGITSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAET---------------- 455

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
                                 +    +             E+ K    ++ +   +   
Sbjct: 456 --------------------PEQEQFSLLD--------NVDEVDKQAIQTLILRARAVVD 487

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           +        ++I    LL   +L V+++L   E+               GI  D  LL +
Sbjct: 488 LAAALDAELDLIDSTSLLGEMELPVQQVLADMEK--------------AGIAADLRLLTE 533

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + ++    +    E  Y + G++ NLSSPKQL  +LF +L  P   +TKTG         
Sbjct: 534 LQSQFGDQIRDAAEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTKRTKTGYTTDADALQ 593

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                 ++P ++++L  R ++++K T  D L N +     R+HT ++     TGRL+S E
Sbjct: 594 SLFCKTEHPFLQHLLTHRDVTRLKVT-VDGLLNAVAADG-RIHTTFNQTIATTGRLSSTE 651

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK----KLISADYSQIELRILAHIAKITPLYQVFEN 773
           PNLQNIPI+T+ G++IR AF+         +L++ADYSQIE+RI+AH+++   L + F  
Sbjct: 652 PNLQNIPIRTNAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIMAHLSRDEGLIEAFHT 711

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  VA+  FG+ IE ++P++RR  K +++ + YG+S + LATQL+I   EA   ++
Sbjct: 712 GEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAYGLATQLKISTEEAKLQME 771

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF RF G+ +Y+       R++GY  T+ GRR +  E++S    IR   ERAA+NAPIQ
Sbjct: 772 QYFARFGGVRDYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQIREAAERAALNAPIQ 831

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           GSAADI + AMI+V KSL+  KLA++MLLQ+HDEL+FEV   E      ++   M  A  
Sbjct: 832 GSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSA-- 889

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
               L VPL+V++    +W 
Sbjct: 890 --YPLDVPLEVSVGFGRSWG 907


>gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 619

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/616 (39%), Positives = 361/616 (58%), Gaps = 21/616 (3%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  +   +    W+  +      +F   T ++D   ++ + ++ S           V 
Sbjct: 20  RNYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-HAAYVPVA 78

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
               D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G
Sbjct: 79  HRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNG 129

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541
              D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+
Sbjct: 130 IEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEY 188

Query: 542 AIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S 
Sbjct: 189 AAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSG 248

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++
Sbjct: 249 EIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL 308

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNL
Sbjct: 309 -AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNL 367

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T  G++IR AF++PP  K++SADYSQIELRI+AHI++   L + F +  DIHR 
Sbjct: 368 QNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRA 427

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+P
Sbjct: 428 TAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYP 487

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ 
Sbjct: 488 GVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLI 547

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M         L+V
Sbjct: 548 KLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA----KLKV 603

Query: 961 PLKVNIKVSNNWQEEN 976
           PL   + V  NW+E +
Sbjct: 604 PLVAEVGVGENWEEAH 619


>gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4]
 gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4]
          Length = 899

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/983 (28%), Positives = 449/983 (45%), Gaps = 108/983 (10%)

Query: 10  VDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +DG S  +RAFYA P  +     G   NA+ GF +M+  L+         +H AV FD  
Sbjct: 2   LDGHSLAFRAFYALPAENFSTASGQHTNAVYGFLSMVANLVTEEE----PTHLAVAFDVS 57

Query: 69  AVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
             T  R   YP+YK+ R   PE    Q+ L++ A  A  +  + ++G EADDIIAT    
Sbjct: 58  RATLHRTAEYPEYKSTRSAAPEEFKGQIELIQEALAALRVRTLSLEGHEADDIIATLATG 117

Query: 128 AEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVCL 182
           A   G   + I + D+D +QLVS    +   VK      +   E V  K+G+ P +   +
Sbjct: 118 AAHSGDARILICTGDRDALQLVSDAVTVLYPVKGVSELARFTPEAVEAKYGVTPAQYPDV 177

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GDS DN+PG+P +G KTAA  + +YG+L  ++ +A  IK  K  E+          
Sbjct: 178 AALRGDSSDNLPGVPKVGDKTAAKWITQYGSLSELIAHADEIKG-KVGES---------- 226

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                           F + L   +L  R+          +E  
Sbjct: 227 --------------------------------FREHLPQVQLNRRITELTRDLDLGVELT 254

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L  +T E   +    +          +F       S    E  P+      L++ +   
Sbjct: 255 DLVRSTPERGDVNALFDRLEFGPQARDRF------LSAFLPEGAPEPAAEVELEQAA--- 305

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                   +++  ++  W+      G     ++             + I+          
Sbjct: 306 --------LLHAGEVSDWLAAHAPAGQRHGLVVVGPSRPGAGDAQTVTIAAAGGASA--- 354

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                 +DL+     D              L+ +  ++   K  H+ K     L    + 
Sbjct: 355 -----HVDLAAIGPDDE-----------QALQGWLGDDAVHKAVHDAKAATHALMGRDLR 398

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + G   D+ L +Y++  G+ S+ +A + Q+ L     E   + K    +D++ D++  + 
Sbjct: 399 LGGVTMDVALAAYLVRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEVDDAEAAQR 458

Query: 542 AIENSNV----ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           A + +      ++ L   L  +L       +   ++ P++ V+++ME  GI +D   L  
Sbjct: 459 AADAAATRARAVVDLAERLDVELEQVHGATLMAEMELPLVPVLARMESIGIAVDASALNG 518

Query: 598 VSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +  + +       E  Y  + GE+ NL SPKQL  +LF  L  P   KTKTG        
Sbjct: 519 LRDDFADRGRQAAEAAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKTKTGYTTDAKAL 578

Query: 657 LEQIN--CGDNP---IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            E +    GD P    ++ +L  R+ +K+++T  + L   I    +R+HT ++     TG
Sbjct: 579 EELLAKETGDTPGRAFLEALLLHRETTKMRTT-VEGLIKTI-GDDRRIHTTFNQTVAATG 636

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQV 770
           RL+S +PNLQNIP++T+ G++IR +F+       L++ADYSQIE+R++AH++    L + 
Sbjct: 637 RLSSTDPNLQNIPVRTEDGRRIRGSFVVGEGYDCLLTADYSQIEMRVMAHLSGDAGLIEA 696

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    D+H  V +  FGV I++V+P++RR  K +++ + YG+S F LA QL I + EA +
Sbjct: 697 FRTGEDLHSFVGSRAFGVPIDQVTPELRRRVKAMSYGLAYGLSAFGLAAQLGISQGEARE 756

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            ++ YF RF G+ +Y++      R++GY ET+FGRR +  E+NS     R   ERAA+NA
Sbjct: 757 QMEAYFSRFGGVRDYLQAVVEQARKDGYTETLFGRRRYLPELNSDNRLKRENAERAALNA 816

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG+AADI + AM+ V   L    L +++LLQ+HDELV EV   E+     ++V  M  
Sbjct: 817 PIQGTAADIIKAAMLKVDADLTARGLKSRLLLQVHDELVLEVAPGELDEVRGLVVDRMYS 876

Query: 951 ACLPKINLRVPLKVNIKVSNNWQ 973
           A    I L VPL V+     NW 
Sbjct: 877 A----IELDVPLDVSTGTGPNWD 895


>gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE]
 gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE]
          Length = 903

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/978 (26%), Positives = 440/978 (44%), Gaps = 97/978 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G P NA+ GF +ML   L++       +HF
Sbjct: 12  NRPRLLLMDGHSLAYRAFFALPAENFTTATGQPTNAVYGFMSMLANTLRDE----APTHF 67

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R   +P+YKANR K P+    Q+ L+     A       + GFEADD+I
Sbjct: 68  AVAFDVSRKTWRATEFPEYKANRSKTPDEFKGQVELIGELLDAMHADRFAVDGFEADDVI 127

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE  GF V I++ D+D  QL++    +    K      +   E V +K+G+ P 
Sbjct: 128 ATLATQAEAAGFEVLIVTGDRDSFQLITDDVTVLYPTKGVSELTRFTPEKVQEKYGLTPG 187

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+   PGI                        + +K   + I ++ 
Sbjct: 188 QYPDFAALRGDPSDNL---PGI----------------------PGVGEKTAAKWINQFG 222

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A    +LV    +V           +   G      L A++  +++  +    +   A
Sbjct: 223 SFA----ELVERADEV-----------KGKAGQNFRDHLDAVKMNRVLTEMVRDVELPKA 267

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E      + T   GI    EI            SL ++   ++    P     +  + 
Sbjct: 268 PQELERAPYDRTAVTGILDVLEIRN---------PSLRERLMAVD----PGAAEAQAPEP 314

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++      ++ + ++  W+++          + T ++           + T+ + 
Sbjct: 315 AAGVELDGA----VLGSGEVAPWLEEHGHQPLGVMTVDTWSL----------GVGTVTEI 360

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              +      ++D +     D              L  +  +    K+ HN K    V  
Sbjct: 361 ALAAADGAAAWLDPAELDEADE-----------QALAAWIADPRRPKVMHNAKNALRVFP 409

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G  + G   D  L +Y++  GR S  + ++A ++L         S    +       +
Sbjct: 410 EQGWRLEGVSMDTALAAYLVKPGRRSFALDALAVEYLGRELAP-APSADGQLAFGADDRA 468

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +      + +  +L L      +L       +   ++ P   +++++E  GI  D+  L+
Sbjct: 469 EADALMAQ-ARAVLDLGEAFAVRLEEVGATGLLHDMELPTSILLARLERHGIAADRSHLE 527

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +  + +  +    +  +   G +FNL SPKQL ++LF +L  P   KTKTG        
Sbjct: 528 GMEQQFAGAVQQAVKEAHAAVGREFNLGSPKQLQEVLFGELALPKTKKTKTGFTTDADAL 587

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  ++ +   +L  R+ +K++ T  + L   I  +  R+HT ++     TGRL+S 
Sbjct: 588 AWLAAQTEHELPVIMLRHREQAKLRVT-VEGLIKTI-GQDGRIHTTFNQTVAATGRLSST 645

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  
Sbjct: 646 DPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGE 705

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H  VA+++FGV+   V  +MRR  K +++ + YG+S F L+ QL I   EA   +  Y
Sbjct: 706 DLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARGLMDTY 765

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F RF G+ +Y+ +     R  GY ETI GRR +  ++NS     R   ER A+NAPIQG+
Sbjct: 766 FQRFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGT 825

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+   E     +I+   M  A    
Sbjct: 826 AADIVKVAMLHVDRALTEARLTSRMLLQVHDEIVLEIAAGEREQVEEILRREMSTA---- 881

Query: 956 INLRVPLKVNIKVSNNWQ 973
           + LR PL V++ V  +W+
Sbjct: 882 VELRAPLDVSVGVGRDWE 899


>gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
 gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
          Length = 870

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/983 (31%), Positives = 471/983 (47%), Gaps = 132/983 (13%)

Query: 10  VDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        SH  V FD
Sbjct: 2   IDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHILVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADDII T   
Sbjct: 58  AGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGTLDK 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P + + L
Sbjct: 118 LAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQFIDL 177

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GD  DN   IPG                       +++ +K   + +LEY      
Sbjct: 178 KALMGDKSDN---IPG----------------------VTKVGEKTGIKLLLEYG----- 207

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVATTYDCDAANI 299
                           LE +  E+ +G +     + L   +    +++   T D  A   
Sbjct: 208 ---------------SLEGI-YENIDGMKTSKMKENLINDKEQAFLSKTLATIDTKA--- 248

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ + +      G  +E        +   Q      Q   ++S    + L    + ++S
Sbjct: 249 -PIAIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAEGLDFTIVDQIS 303

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q  ++ +S                        F       +      +  A S  D+   
Sbjct: 304 QDMLSEES-----------------------IFHFELFGENYHTDNLVGFAWSCGDK--- 337

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                              +T K  L ++     K F E        ++ K  K++L R+
Sbjct: 338 -----------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKVKVLLQRF 376

Query: 480 GISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKIS 534
           G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +IP     
Sbjct: 377 GVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIP----E 431

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +  EH      V+++   +L  KL     L +   +++P+  V+++MEI GI + ++ 
Sbjct: 432 REKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIVVKKET 491

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT    +TA
Sbjct: 492 LLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTA 551

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    T TGRL+
Sbjct: 552 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQTGRLS 610

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L + F+ 
Sbjct: 611 SVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQE 670

Query: 774 SLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
             DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R EA  YI
Sbjct: 671 GADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYI 730

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER AIN+PI
Sbjct: 731 DTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAINSPI 790

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++  +ME+A 
Sbjct: 791 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEA- 849

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
              I L VPL  +      W E 
Sbjct: 850 ---IQLSVPLIADENEGATWYEA 869


>gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54]
 gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54]
          Length = 877

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/990 (31%), Positives = 469/990 (47%), Gaps = 132/990 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A    L R     GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL                          G+  + +   +++ +K   + +LE
Sbjct: 178 PAQFIDLKALM-------------------------GDKSDNIPGVTKVGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVATTY 292
           Y                      LE +  E+ +G +     + L   +    +++   T 
Sbjct: 213 YG--------------------SLEGI-YENIDGMKTSKMKENLINDKEQAFLSKTLATI 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + +      G  +E        +   Q                     L
Sbjct: 252 DTKA----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQ---------------------L 286

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           ++   +S   ++      IV+        ++      + F       +      +  A S
Sbjct: 287 KQALNVSSADVSESLDFTIVDQISQDMLSEE------SIFHFELFGENYHTDNLVGFAWS 340

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             D+                      +T K  L ++     K F E        ++ K  
Sbjct: 341 CGDK--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKV 376

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
           K++L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +
Sbjct: 377 KVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKA 435

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP       +  EH      V+++   +L  KL     L +   +++P+  V+++MEI G
Sbjct: 436 IP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAG 491

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT
Sbjct: 492 IMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKT 551

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    
Sbjct: 552 KTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDL 610

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEH 670

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R
Sbjct: 671 LIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLGISR 730

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  YF RFPGI  Y+++     R  GYVET+F RR    +INS   +IR   ER
Sbjct: 731 KEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAER 790

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++ 
Sbjct: 791 TAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVK 850

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPL  +      W E 
Sbjct: 851 QTMEEA----IQLSVPLIADENEGATWYEA 876


>gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
 gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
          Length = 955

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/979 (29%), Positives = 460/979 (46%), Gaps = 69/979 (7%)

Query: 30  HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPE 89
            DG    A+  F + L  ++    K+   SH AV FD P  TFR E Y +YK+ R  IPE
Sbjct: 13  SDGQHTEAVHAFLSTLLNII----KDHNPSHIAVAFDLPGGTFRTEEYSEYKSGRNVIPE 68

Query: 90  MLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS 149
               QL L++    A  IPA+  + +EADDI+AT T    +  + V I+S D+D+ QLV+
Sbjct: 69  AFDGQLDLIKKMLGALKIPALTQENYEADDIVATLTRQGSEAQYKVLILSGDRDIFQLVT 128

Query: 150 PTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
               L   V        +++D   V KK  +PP     L ALTG+  DN+PG+PG+G   
Sbjct: 129 DDVTLLYPVTTGPSKGIQRMDPAAVEKKTKVPPRLYPDLAALTGEQADNLPGVPGVGPGF 188

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           AA  L EYG+LE +L N+  IK KK  E + E  E  R +R+L  L   + + +  + + 
Sbjct: 189 AAKWLHEYGDLEGVLANSENIKGKK-GEALRENIENVRRNRRLNQLVDTLNLDVEFDQMR 247

Query: 264 LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRD 323
               +   L +F   +EF  +  R           +   V            + +    +
Sbjct: 248 FI-PDLQELEAFFDEVEFRTIRKRAQDILGPVIRALGAQVRTAGEEPMTDNGVPSGPTFE 306

Query: 324 TTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQK 383
             I+T    ++          +    +   R    +   +       +     I   V +
Sbjct: 307 -PIRTDDAITVKSAADFRVWCEHAAHVGYGRDASGNAIEVPERLKGAVTLFPVIDVPVAR 365

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
                    K+    + A    P+   I                   L+   S       
Sbjct: 366 ------EGVKVTKTKIRAAEENPVLRGII------------------LTSKESSLWINLT 401

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLD----S 498
            +++++ S   ++  +    KI  ++K  + +L  YG  + G  ED  L SY+      +
Sbjct: 402 NISEDLASAFAEWVSDPQMRKIVMDLKNQRKLLREYGYKLDGAIEDPSLSSYMCGYIAAA 461

Query: 499 GRSSHD--IASIAQKWLSYTRKEILKSR--KSSIPIDKISDSQVQEHAIENSNVILQLWL 554
            R      I  +A+K+L   ++E  +    + +  + ++   +   +  + S VI +L  
Sbjct: 462 NRRLFAERIEDLAEKYLWIPQQEFSELVFPEEAPSLFEMPGEENLRYFTQVSRVIHELAR 521

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           +L  ++  +  L +YE ++ P++ V++ ME  GI +   LL +++   S      EE   
Sbjct: 522 ILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAK 581

Query: 615 -----DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-----NCGD 664
                D++GE  NL+S KQL  +LF +L  P   K K+G    +    + +         
Sbjct: 582 VLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDG 641

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
              +  +  +R   K+K T  + L         RVHT +   +  TGRL+S  PNLQNIP
Sbjct: 642 AQFLIALQAYRDNIKLKQT-VEGLQKAAVADG-RVHTTFQQNAASTGRLSSTAPNLQNIP 699

Query: 725 IKTDLGQKIRRAFISPP-------TKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           I+TD G++IR AFI  P        + L++ADYSQIE+RI+ H+A    L Q + +  D+
Sbjct: 700 IRTDEGRRIRGAFIVAPKILDGVEYEGLLTADYSQIEMRIMVHLAADEKLIQAYADGEDL 759

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR V +E+FGV  E+V+PQMR   K +++ + YG+S F LA QL I   EA +    YF 
Sbjct: 760 HRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYGLSRFGLAKQLNISSDEAGELRTNYFK 819

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF  +  ++         +GY ETI+GRR    +++SP  + R   ERAA+NAPIQG+AA
Sbjct: 820 RFGRVGRFLRGVVKQAHNDGYTETIYGRRRSLPDLDSPNRTRREAAERAALNAPIQGTAA 879

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI++H+ L++  L T+MLLQ+HDE++ EV   E   A +I+V  M +A    I 
Sbjct: 880 DIIKIAMINIHRRLQEENLKTRMLLQVHDEIILEVAAGEREAAQRILVEEMSEA----IE 935

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L+VPL V +    +W+E  
Sbjct: 936 LKVPLDVQVGWGKSWEEAG 954


>gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567]
 gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567]
          Length = 955

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/979 (29%), Positives = 465/979 (47%), Gaps = 69/979 (7%)

Query: 30  HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPE 89
            DG    A+  F + L  ++    K+   SH AV FD P  TFR E Y +YK+ R  IPE
Sbjct: 13  SDGQHTEAVHAFLSTLLNII----KDHNPSHIAVAFDLPGGTFRTEEYSEYKSGRNVIPE 68

Query: 90  MLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS 149
               QL L++    A  IPA+  + +EADDI+AT T    +  + V I+S D+D+ QLV+
Sbjct: 69  AFDGQLDLIKKMLGALKIPALTQENYEADDIVATLTRQGSEAQYKVLILSGDRDIFQLVT 128

Query: 150 PTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
               L   V        +++D   V KK  +PP     L ALTG+  DN+PG+PG+G   
Sbjct: 129 DDVTLLYPVTTGPSKGIQRMDPAAVEKKTKVPPRLYPDLAALTGEQADNLPGVPGVGPGF 188

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           AA  L EYG+LE +L+N+  IK KK  E + E  E  R +R+L  L   + + +  + + 
Sbjct: 189 AAKWLHEYGDLEGVLVNSENIKGKK-GEALRENIENVRRNRRLNQLVDTLNLDVEFDQMR 247

Query: 264 LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRD 323
               +   L +F   +EF  +  R           +   V            + +    +
Sbjct: 248 FI-PDLQELEAFFDEVEFRTIRKRAQDILGPVIRALGAQVRTAGEEPMTDNGVPSGPTFE 306

Query: 324 TTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQK 383
             I+T +  +++      +  +    +        +   I       +     I   V +
Sbjct: 307 -PIRTDEAITVTSAADFRSWCEHAAHVGYGHDASGNAIEIPERLKGAVTLFPVIDVPVAR 365

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
                    K+    + A    P+   I                   L+   S       
Sbjct: 366 ------EGVKVTKTKIRAAEENPVLRGII------------------LTSKESSLWINLT 401

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLD----S 498
            +++++ S   ++  +    KI  ++K  + +L  YG  + G  ED  L SY+      +
Sbjct: 402 NISEDLASAFAEWVSDPQMRKIVMDLKNQRKLLREYGYKLDGAIEDPSLSSYMCGYIAAA 461

Query: 499 GRSSHD--IASIAQKWLSYTRKEILKSR--KSSIPIDKISDSQVQEHAIENSNVILQLWL 554
            R      I  +A+K+L   ++E  +    + ++ + ++   +   +  + S VI +L  
Sbjct: 462 NRRLFAERIEDLAEKYLWIPQQEFSELVFPEEALSLFEMPGEENLRYFTQVSRVIHELAR 521

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           +L  ++  +  L +YE ++ P++ V++ ME  GI +   LL +++   S      EE   
Sbjct: 522 ILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAK 581

Query: 615 -----DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-----NCGD 664
                D++GE  NL+S KQL  +LF +L  P   K K+G    +    + +         
Sbjct: 582 VLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDG 641

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
              +  +  +R   K+K T  + L         RVHT +   +  TGRL+S  PNLQNIP
Sbjct: 642 AQFLIALQAYRDNIKLKQT-VEGLQKAAVTDG-RVHTTFQQNAASTGRLSSTAPNLQNIP 699

Query: 725 IKTDLGQKIRRAFISPP-------TKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           I+TD G++IR AFI  P        + L++ADYSQIE+RI+ H+A    L Q + +  D+
Sbjct: 700 IRTDEGRRIRGAFIVAPKVLDGVEYEGLLTADYSQIEMRIMVHLAADEKLIQAYADGEDL 759

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           HR V +E+FGV  E+V+PQMR   K +++ + YG+S F LA QL I   EA +    YF 
Sbjct: 760 HRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYGLSRFGLAKQLNISSDEAGELRTNYFK 819

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           RF  +  ++         +GY ETI+GRR    +++SP  + R   ERAA+NAPIQG+AA
Sbjct: 820 RFGRVGRFLRGVVKQAHNDGYTETIYGRRRSLPDLDSPNRTRREAAERAALNAPIQGTAA 879

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI++H+ L++ KL T+MLLQ+HDE++ EV   E   A +I+V  M +A    I 
Sbjct: 880 DIIKIAMINIHRRLQEEKLKTRMLLQVHDEIILEVAVGEREAAQRILVEEMSEA----IE 935

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L+VPL V +    +W+E  
Sbjct: 936 LKVPLDVQVGWGKSWEEAG 954


>gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 887

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/983 (28%), Positives = 461/983 (46%), Gaps = 112/983 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +     L+DG+S ++R FY          G+P N I GF     KLLQ  + E    + 
Sbjct: 5   NQTKKAILIDGNSILFRMFYGV-RTMTSSKGVPTNGIFGFV----KLLQQIQNEMQPDYL 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A  FD    TFR++ Y  YKA R K+PE L+ QL L++       +P + + G+EADDII
Sbjct: 60  AAAFDMAQPTFRHQRYDAYKAGRDKMPEELITQLDLIKEILTQMQVPVVMLAGYEADDII 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPP 176
            T       +G A  II+ D+D  QLV     +  T         ++D  ++ +K+    
Sbjct: 120 GTLAKKFSGKGVAAKIITGDRDSFQLVEDQVHILYTTTRSGNQFVEVDPVYIHEKY---- 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
                             GI  I       L+   G+  + +     I +K   + + +Y
Sbjct: 176 ------------------GIEPIELIQVKALM---GDPSDNIPGIKGIGEKTALKFVKQY 214

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                                 ++ L         L    K            + +  + 
Sbjct: 215 --------------------HTVDGLYEH---IDELKGKQKEKVAAGKDAAYLSLFLGEI 251

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+ +D +  + + +  E  +     +K  +F+S+  + S   +  T     +    
Sbjct: 252 DVKAPIEMDESDMQMRDLFNEQVV---EILKELEFTSILRKLSAPMALPTGDAASVA--- 305

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S    + D Y  +       Q +  +   G A +                        
Sbjct: 306 -YSTVGSSKDLYFLLTQIAKEDQLLLHIIQEGKALW------------------------ 340

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +F+++  +  +          +  L + +L  L      +    +GH++K    + 
Sbjct: 341 ---AAFELKGRYYYVP---------ETALVEALLGALNDLPNADALGIVGHDLKALTHIF 388

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532
              G  +   + D  + +Y+L+   + +D+ S+A K+L  T    +E+L   ++   + +
Sbjct: 389 EAQGAQLVKMDFDTYVAAYLLEPADNRYDLKSLAAKYLDQTIVGEEELLGKGRTRRALAE 448

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I+  +     +     I  L   L  +L   ++  +Y++++ P+I V++ ME  G +IDQ
Sbjct: 449 IAAPERAAFIVGECAAIHGLHAELAHQLEEMEMTALYQKIELPLIPVLASMESIGFKIDQ 508

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + LK +SA     + +L   IY+ +G++FN++S KQLG ILF ++  P   KTKTG + T
Sbjct: 509 EQLKNLSAHFEARIETLTRQIYEEAGQRFNINSTKQLGMILFEEMGLPPIKKTKTG-YST 567

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           + + LEQ+    N I+ +ILE+R ++K+ STY   L   ++  T+++++ ++   T TGR
Sbjct: 568 SVEVLEQLR-PYNTIVDDILEYRTVTKLDSTYGRGLIKLVDPETEKIYSHFNQTVTATGR 626

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           ++S +PNLQNIP++TDLG++IRR F+   P   L+ ADYSQIELR+LAH+ +   L + F
Sbjct: 627 ISSSDPNLQNIPVRTDLGREIRRVFVPSSPMCVLVDADYSQIELRVLAHLTQDENLLEAF 686

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
             + DIH   A+EIF V +E V+ + R HAK INF +IYG   F L  +L I R++A DY
Sbjct: 687 AKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIYGKQAFSLGKELGIGRNQAQDY 746

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF R+P ++ Y++  +   +  GYV T++GRR +  EI S    I    ER A+N P
Sbjct: 747 IDMYFSRYPKVYAYMKAIREEAKTKGYVTTLYGRRRYIPEIQSRNRMIVQSGERMALNTP 806

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM+ V+  L      + +LLQIHDEL+ E PE E     +++   ME A
Sbjct: 807 IQGSAADIMKIAMVKVYHRLAKESFRSHLLLQIHDELIIEAPETESEKILRLLTEEMENA 866

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
               ++L VPL V+ ++  +W E
Sbjct: 867 ----VSLSVPLVVDARIGKSWYE 885


>gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
 gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
          Length = 879

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/974 (28%), Positives = 457/974 (46%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA     +   G     I+GF N ++ L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIIFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR++I P+YK NR   P  LL Q+P+     +  G  +   +G+EADDIIA+ 
Sbjct: 57  LDSKGKTFRSDIDPNYKKNRTPPPPELLEQIPICIEMIEKMGFMSASYEGYEADDIIASV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               + +   V II+ DKDL QL+    T +Y  + +   D E   +K+G+ P ++    
Sbjct: 117 VKTCKDKDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEEACFEKYGVKPYQIKDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ GIG K A  LL E+G++E I  N + ++ ++ R+ +LE  E A LS
Sbjct: 177 ALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRKLLLEGKENAFLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +KL                           S  + LE + L+ +       D    EP++
Sbjct: 237 KKLA--------------------------SLYEDLEVSNLLEK------ADFPQDEPLL 264

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             +   E+  + +  +  R       +                                 
Sbjct: 265 KILEILEHYELNVLLKKLRQNPDNKDKNLGFKA--------------------------- 297

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                T I +   + + +  LE     +F   T ++D   +K +  +    + +      
Sbjct: 298 -----TLIQDEDKLFEILNSLEQESIIAFDTETTSIDTKEAKIVGFSFCMSENE------ 346

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGIS 482
               ++ L+ +      GK    +     ++  F       IGHN+KYD  ++ + + +S
Sbjct: 347 --AFYVPLTHNYL--GVGKQVSLQSAKKAIELIF---KHFIIGHNLKYDFKIIENNFKLS 399

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           + + + D M+++++ +      ++  +A +  +Y         K       +   +  ++
Sbjct: 400 LPQKYADTMILAWLKNPS-LRVNMDDLALRLFNYETLHFESLVKKGENFASVELEKACKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +L     L    LL + +  +   I ++  ME  GI++D   L+ +  +
Sbjct: 459 AAEDAYITLRFYLYFLKNL-EPHLLDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKK 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               +  L E IY L  ++FNL+SPKQ+GDILF KLK PSG K KTG         E + 
Sbjct: 518 FESEIKILSEEIYALCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELL- 576

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNL 720
              +P+I  IL++R+L+K+ STY + L    +     R+++ +    T TGRL+S +PNL
Sbjct: 577 -DKHPVISKILDYRELAKLYSTYCEPLLKLALKDENSRIYSSFLQTGTATGRLSSKDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP      +  +  FI+      IS DYSQIELR+LAH ++   L   F+N  DIH  
Sbjct: 636 QNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHAR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG    + + + R  AK+INF +IYG+    L+  L+I  + A  YI++YF  F 
Sbjct: 696 TAIMIFG----ESNYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAKTYIEKYFENFT 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I  Y EK KN  + NG++ T+ GR+ ++D  N+ K     + ER +IN+ +QGSAADI 
Sbjct: 752 SIKSYFEKVKNEAKANGFISTLSGRKRYFDFENA-KPMQVAMYERESINSILQGSAADII 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ + K L   K   +++LQIHDEL+FEV +E      +     ME      + L+V
Sbjct: 811 KFAMLEIAKILNQDK---RLILQIHDELIFEVKDELCENFVKKTSDIMEN----IVKLKV 863

Query: 961 PLKVNIKVSNNWQE 974
            LK +  ++  W +
Sbjct: 864 KLKTSSSIAKKWGD 877


>gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
 gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
          Length = 908

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/981 (27%), Positives = 424/981 (43%), Gaps = 98/981 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L L+DG S  YRAF+A P+ +     G P NA+ GF +ML  LL++       +H
Sbjct: 11  STTPRLLLIDGHSMAYRAFFALPVENFSTSSGQPTNAVFGFTSMLANLLRDEE----PTH 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR E    YK NR   PE    Q+ ++R       +  ++  GFEADDI
Sbjct: 67  VAVAFDAGRTTFRTERLESYKGNRSATPEPFRGQVDVIRQLLATMHVQVLDKPGFEADDI 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           +AT T  A ++G  V + S D+D  QLV P   +   V+      ++  E V  K+G+PP
Sbjct: 127 LATLTAQAGEQGMEVLVCSGDRDTFQLVGPQVTVLYPVRGVSEMSRMTPEAVEAKYGLPP 186

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +   L AL G++ DN+PG+PG                         +  K   + I +Y
Sbjct: 187 ARYPDLAALVGETSDNLPGVPG-------------------------VGPKTAAKWITQY 221

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                    L  +  +           +    G  L + L  +   + +N + T  D   
Sbjct: 222 DG-------LAGVLENAE--------RITGKAGESLRANLAQVALNRELNELRTDLDLPL 266

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +  V   +      +  E E     T++   F+ L D++             +E   
Sbjct: 267 GPEDLAVRPWDRAALHQMLDELEFR---TLRDRLFAMLPDESRDERVATVAALDLVE--- 320

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                               +  W+            +              +A++    
Sbjct: 321 ---------------TGVGGLGAWLD-ARVDQVLGLDVRGTG-APGRGDAWGVAVADGAG 363

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +            DL+     D T            L  +  +    K  H  K     L
Sbjct: 364 QAVAY--------DLTAIDPADET-----------ALAAWLADPQRPKALHAAKEASHAL 404

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID-KIS 534
              G+ + G   D  L +Y+    R ++D+  +A  +L         S      +D ++ 
Sbjct: 405 AGRGLDLEGVTFDTELAAYLCQPDRRAYDLPDLAIGYLRRELGGDDGSSAGQGALDLEVD 464

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            +     A   +  +  L  +L  ++       +   L+ P+  V++++E TGI ID   
Sbjct: 465 GADEGRRAAVRAAAVRDLVDVLGGEVADRGATTLLSDLELPLQAVLARLERTGIAIDHAY 524

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L  +  E    +     + Y + G + NL SPKQL ++LF +L+ P   + KTG      
Sbjct: 525 LSGLEREFDGQVQGAAADAYAVIGREVNLGSPKQLQEVLFDQLRMPKTKRIKTGYTTDAN 584

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
              +      +P ++++L  R   +++ T  + L   +     R+ T +      TGRL+
Sbjct: 585 ALTDLFARTGHPFLEHLLAHRDAIRLRQT-VEGLLRSV-ADDGRIRTTFQQTIAATGRLS 642

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFEN 773
           S +PNLQNIPI+TD G++IRRAF+  P    L++ADYSQIE+RI+AH++    L   F +
Sbjct: 643 SADPNLQNIPIRTDAGRQIRRAFVVGPGYATLLTADYSQIEMRIMAHLSGDEGLIAAFRS 702

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  V + +FGV  ++V+P MR   K +++ + YG+S + L+ QL I  SEAA  + 
Sbjct: 703 GEDLHSYVGSRVFGVPTDEVTPTMRSKIKAMSYGLAYGLSSYGLSQQLAIEVSEAAALMT 762

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +Y+    +  R  GY  T+ GRR +  ++ S     R   ER A+NAPIQ
Sbjct: 763 DYFERFGGVRDYLTGVVDQARATGYTATVLGRRRYLPDLTSDNRQRREAAERMALNAPIQ 822

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA-- 951
           GSAAD+ + AM+ V   L    L ++MLLQ+HDELV EV E E     +++   M  A  
Sbjct: 823 GSAADLIKVAMLGVDGELTRRGLRSRMLLQVHDELVLEVAEGEREEVEELVRTQMAAAGS 882

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
            LP   L VPL V++ V  +W
Sbjct: 883 GLPDGPLDVPLDVSVGVGESW 903


>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
          Length = 612

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/623 (40%), Positives = 387/623 (62%), Gaps = 21/623 (3%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              ++ ++Y  I++ K +  W+++L+     +F   TD +D   S  I ++ +     + 
Sbjct: 5   TAVLSQENYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPG-EA 63

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
               +   ++D      +D          +L+ LK   E++  LK+G N+K+D+ +L RY
Sbjct: 64  AYLPLAHDYLDAPAQLDRD---------WVLAQLKPLLEDDKALKVGQNLKFDQSMLARY 114

Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISD 535
           GI +RG   D ML SYVLDS    HD+ S+A+++L++     +EI    K+ +  ++I+ 
Sbjct: 115 GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL 174

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            Q   +A E+++V LQL L+L PKL   E L  V++ ++ P++ ++S++E TG+ IDQ++
Sbjct: 175 EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNI 234

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L   S E++  L  LE+  ++L+ E FNL+SPKQL  IL+ K K P   KT  G   T  
Sbjct: 235 LVAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNE 294

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + L ++   D P+ K ILE+R L+K+KSTY D LP  IN  + RVHT Y  A T TGRL+
Sbjct: 295 EVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGRLS 353

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIP++ + G++IR+AFI+P   ++++ADYSQIELRI+AH+++   L   F   
Sbjct: 354 SRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAG 413

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIHR  AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA  Y+  
Sbjct: 414 KDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDL 473

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF R+PG+ EY+E+T+    + GYV T+ GRR++  +I+S  ++ R   ER AINAP+QG
Sbjct: 474 YFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQG 533

Query: 895 SAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           +AADI +RAMI+V   L+   +   ++++Q+HDELVFEV E  + +A Q I   ME+   
Sbjct: 534 TAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQ--- 590

Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976
             + L VPLKV++ V  NW + +
Sbjct: 591 -SMQLAVPLKVDVGVGYNWDQAH 612


>gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5]
 gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5]
          Length = 909

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/976 (27%), Positives = 438/976 (44%), Gaps = 95/976 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H  V
Sbjct: 16  PRLLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQ----PTHIVV 71

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR + Y +YKA R + P     Q+ LV+    A  +P +E +G+EADD+IAT
Sbjct: 72  AFDVSRRSFRTDRYAEYKAGRSETPTDFKGQVSLVKEVLAALRVPVVEKEGYEADDVIAT 131

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + D+D  QLV     +    K                   +  L 
Sbjct: 132 LACQARDQGMDVLITTGDRDAFQLVGERVTVLYPRKG------------------VSDLA 173

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE--NILEYAETAR 241
            +   +++   G+    Y+  A L+ E     + L     +  K   +  N+    E   
Sbjct: 174 RMDPAAVEAKYGVTPDRYRDLAALVGE---TSDNLPGVPGVGPKTAAKWINLYGGVEG-- 228

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                V+ R D       + L        RL   ++  E   L++ +      + A  + 
Sbjct: 229 -----VVARADEIKGKAGDSL------RERLADVIRNYEINCLVSDLELPVRPEDARWQG 277

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
              +                      T QF  L D+  +      P+      L      
Sbjct: 278 WDREAVHQ---------------VFDTLQFRILRDRLYQYLEAVEPEAEAGFDLAG---- 318

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                    +     +  W+                   A    P+ +A++     +   
Sbjct: 319 -------EVLTEPGALAGWL----------------GTHAPAGAPVGLAVTLDTGPNRRH 355

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
               T     +   +      + L  +  + L  +  +    K+ H+ K   L    +G 
Sbjct: 356 TATVTAMALATAAGAGAWFDPSRLDADDEAALAGWLADAERPKVLHDSKPAVLAFAAHGW 415

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            ++G   D  + +Y+    + S+D+  +A ++L +    +       + +D + D  V E
Sbjct: 416 ELQGIARDTQIAAYLARPDQRSYDLTDLALRYL-HRELRVDAPETGQLTLDGLGDEGVAE 474

Query: 541 -HAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            + +  +   L L   +  +L    E+   +   ++ P++ V++ ME TGI  D D L +
Sbjct: 475 QNLMLQARATLDLADAIDAELSRDGEQSARLMAGVELPLMRVLATMERTGIAADTDYLSE 534

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           + A  +  + +  +  Y++ G +FNL SPKQL +ILFT+L  P   + KTG         
Sbjct: 535 LEAHFAAEVKAAAQGAYEVVGREFNLGSPKQLQEILFTELGLPKTKRIKTGYTTDADALQ 594

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                 ++P++ ++L  R ++K+KST  D L   ++    R+HT ++     TGRL+S E
Sbjct: 595 WLFAQTEHPLLHHLLRHRDVAKLKST-VDGLLKSVSDDG-RIHTTFNQTVAATGRLSSTE 652

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+T+ G++IRRAF+       L++ADYSQIE+RI+AH++    L + F +  D
Sbjct: 653 PNLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHD 712

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            H   A+ +F V +  V+   RR  K +N+ + YG+S F L+ QL I   EA   ++ YF
Sbjct: 713 FHAATASSVFTVEVGDVTADQRRKIKAMNYGLAYGLSAFGLSQQLGISAEEARGLMENYF 772

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             F G+ +Y+++     RQ+GY  TI GRR +  ++ S     R + ER A+NAPIQGSA
Sbjct: 773 AGFGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAERMALNAPIQGSA 832

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V  +L D  L ++MLLQ+HDELVFEV   E  T   ++   M +A     
Sbjct: 833 ADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERETLEALVRKQMGEA----Y 888

Query: 957 NLRVPLKVNIKVSNNW 972
            L VPL+V++   ++W
Sbjct: 889 PLSVPLEVSVGEGHDW 904


>gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 888

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/983 (28%), Positives = 480/983 (48%), Gaps = 104/983 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M K+  L L DGSS  +RAF+A   L+R   + GL  NA+  F  ML  +L+  +     
Sbjct: 1   MSKQEKLLLFDGSSLAFRAFFAMHDLNRFKNNKGLHTNALYAFHLMLTHVLEKEK----P 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           SH  V +D    TFR   YP+YK  R K P+  + Q+P       AFGI   E+  +EAD
Sbjct: 57  SHALVAWDAGKTTFRTAYYPEYKGGRDKTPQEFVEQMPYFNKLLDAFGIAHYELANYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           DII T +    + G  V IIS DKDL+QL      +    K             G+    
Sbjct: 117 DIIGTLSQRGAEAGMDVVIISGDKDLIQLARDQVRVDINRK-------------GVTN-- 161

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            +          D      GI  +    +    G+  +     + I +K   + + E+  
Sbjct: 162 -IDSYTPQSIQADQ-----GISPEQLIDVKGLMGDNSDNYPGVTGIGEKTALKLVQEFGS 215

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                           +   ++ +  +      +    +A    KL   +          
Sbjct: 216 M-------------EEVYANIDQVSGKKRKENLVKDKDQAFLSKKLARIILD-------- 254

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             PV   +   + +GI  +  ++    +   QF       S  +++   +    E     
Sbjct: 255 -APVEKSLADLKCQGIQAQDLVNFYREMNFKQFMEKFLANSGADADFELEDSSWE----- 308

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                       + + + + Q   K  T    +  +     +    K I +     D   
Sbjct: 309 ------------VPDYQVLDQLEAKHFTQDQTALYLEMFENNYHEGKLIYVVWGNKDHIY 356

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             S                       L +E     K + E+ H  K+ ++ K  +++L  
Sbjct: 357 LASP---------------------DLVRES-QAFKNWIEDPHAKKVLYDAKRSQVILKG 394

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK----WLSYTRKEILKSRKSSIPIDKI 533
            G+ + G  +D+++ SY++ +   S D+A++A++    +L+Y  +   K +K ++P DK 
Sbjct: 395 LGMDLEGVSDDVLIASYLIHARDLSGDVANVAREFNLDYLAYDSEVYGKGKKVAVPEDK- 453

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +++ +H +   +VI  L  +++ +L  ++++ +Y +++ P+  V+++MEI GI +D+ 
Sbjct: 454 --TRLYDHLVAKVSVINDLLPIIKDRLEADEMVELYRKIELPLAQVLAKMEIMGISVDRS 511

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L  +S    + L  L+E IY  +G +FN++S +QL  +LF  +    G KTK+G + T 
Sbjct: 512 RLVGLSQSYEEQLDQLQEEIYREAGVEFNINSTQQLSKVLFEDMGLKGGKKTKSGNYSTA 571

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             +LE++     PII  IL +RQL+K++STY   + ++I+ +  +VH+ +    T TGRL
Sbjct: 572 QSELEKL--QGVPIIDLILAYRQLAKLQSTYVQGILDYIH-QDGKVHSRFIQTLTTTGRL 628

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIPI+T+ G+KIR+AF+   P   + S+DYSQIELR+LAH++    L + F+
Sbjct: 629 SSADPNLQNIPIRTEEGRKIRQAFVPSHPDWVIFSSDYSQIELRVLAHVSGDPHLQEAFK 688

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
            + DIH   AA++F  + + +S   RR AK +NF I+YGIS + L+  L I R EA  +I
Sbjct: 689 ENKDIHTATAAKVFHKDEKDISKDERRQAKAVNFGIVYGISDYGLSQNLSISRQEAKAFI 748

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +YF  +P + EY++K+    R+ GY +T+F RR +  ++ +   ++R+  ER A+N+PI
Sbjct: 749 DKYFEIYPKVAEYMDKSVEIAREAGYAKTLFNRRRYLPDLKAKNYNVRSFAERTAMNSPI 808

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AM+ + ++L++H+L   +LLQ+HDEL+FEV +E++   + ++   ME A 
Sbjct: 809 QGTAADIIKVAMVEMDQALKEHQLQANLLLQVHDELIFEVAKEDLEDLAALVKDVMENA- 867

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
              ++L VPL V+    + W + 
Sbjct: 868 ---VSLDVPLIVDSNYGSTWYDA 887


>gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA]
 gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA]
          Length = 877

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/990 (30%), Positives = 469/990 (47%), Gaps = 132/990 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ 
Sbjct: 118 IIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLT 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P + + L+AL                          G+  + +   +++ +K   + +LE
Sbjct: 178 PAQFIDLKALM-------------------------GDKSDNIPGVTKVGEKTGIKLLLE 212

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVATTY 292
           Y                      LE +  E+ +G +     + L   +    +++   T 
Sbjct: 213 YG--------------------SLEGI-YENIDGMKTSKMKENLINDKEQAFLSKTLATI 251

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D  A    P+ + +      G  +E        +   Q      Q   ++S    + L  
Sbjct: 252 DTKA----PIAIGLEDLVYSGPDVENLGKFYDEMGFKQLK----QALNVSSADVAKGLDF 303

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
             + ++SQ  ++ +S                        F       +      +  A S
Sbjct: 304 TIVDQISQDMLSEES-----------------------IFHFELFGENYHTDNLVGFAWS 340

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             D+                      +T K  L ++     K F E        ++ K  
Sbjct: 341 CEDK--------------------LYATDKLELLQD--PIFKDFLEKTSLR--VYDFKKV 376

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
           K++L R+G+ ++    DI L  Y+L S    ++IA+IA  +      +      K  K +
Sbjct: 377 KVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYGKGVKKA 435

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           IP       +  EH      V+++   +L  KL     L +   +++P+  V+++MEI G
Sbjct: 436 IP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAG 491

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L ++ AE    +  L + IY+L+GE+FN++SPKQLG +LF KL  P     KT
Sbjct: 492 IVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPLEYTKKT 551

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +      PI+K IL++RQ++KI+STY   L + I    + +HT Y    
Sbjct: 552 KTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYMQDL 610

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP + + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEH 670

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L + F+   DIH   A  +FG+   + V+   RR+AK +NF ++YGIS F L+  L I R
Sbjct: 671 LIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLGISR 730

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  YI  YF RFP I  Y+++     R  GYVET+F RR    +INS   +IR   ER
Sbjct: 731 KEAKAYIDTYFERFPDIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAER 790

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI + K+L      TKMLLQ+HDE+V EVP+ E+    +++ 
Sbjct: 791 TAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVK 850

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME+A    I L VPL  +      W E 
Sbjct: 851 QTMEEA----IQLSVPLIADENEGATWYEA 876


>gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 907

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/977 (26%), Positives = 430/977 (44%), Gaps = 97/977 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++       +HFA
Sbjct: 17  RPRLMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASMLANTLRDE----APTHFA 72

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    T+R+E + +YKANR K P+    Q+ L+     A       + GFEADDIIA
Sbjct: 73  VAFDVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAQRFAVDGFEADDIIA 132

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE EGF V I++ D+D  QLVS  T +    K      +   E V +K+G+ P +
Sbjct: 133 TLATQAEAEGFEVLIVTGDRDSFQLVSDHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQ 192

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL                          G+  + L     + +K   + I ++  
Sbjct: 193 YPDFAALR-------------------------GDPSDNLPGIPGVGEKTAAKWINQFGS 227

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A    +LV    +V   +           G  L   L++++  + +  +    +   + 
Sbjct: 228 FA----ELVERVDEVKGKV-----------GQNLRDHLESVKLNRRLTEMVRDVELPKSV 272

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                   + T    +    EI   +  +         + ++         +    L   
Sbjct: 273 AALERAPYDRTAVAMVLDTLEIRNPSLRERLLAVDPGGEEAEEAPVAAGVAVDGAVLGAG 332

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
              P   +  T ++    +  W                           A+    + +  
Sbjct: 333 ELKPWLAEHGTTVLGLATVDSW---------------------------ALGAGAVAEVA 365

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +      + D S     D            +    +  +    K+ HN K    V   
Sbjct: 366 LAAADGAAAWFDPSQLDEADE-----------NAFATWLADPAKPKVLHNAKGVMRVFAE 414

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           +G ++ G   D  L +Y++  GR S  + +++ ++L    +    +    +       ++
Sbjct: 415 HGWTVEGVSMDTALAAYLVKPGRRSFALDALSLEYLGRELEP-AATADGQLAFGADEGAE 473

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                ++ +  IL L      +L       +   ++ P   +++++E  GI  D+  L+ 
Sbjct: 474 ADALMVQ-ARAILDLGEAFGERLKEVGSADLLRDMELPTSALLARLERHGIAADKAHLEA 532

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +    +  +    +  +  +G +FNL SPKQL ++LF +L  P   KTKTG         
Sbjct: 533 MEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALA 592

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                 DN +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+S +
Sbjct: 593 WLAAQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLSSTD 650

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  D
Sbjct: 651 PNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGED 710

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +H  VA+++FGV    V  +MRR  K +++ + YG+S F L+ QL I   EA   +  YF
Sbjct: 711 LHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMDTYF 770

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RF G+ +Y+ +  +  R  GY ET+FGRR +  ++NS     R   ER A+NAPIQG+A
Sbjct: 771 ERFGGVRDYLRRAVDEARATGYTETLFGRRRYLPDLNSDNRQRRETAERMALNAPIQGTA 830

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM++V ++L++  L ++MLLQ+HDE+V E+   E     +++   M  A    +
Sbjct: 831 ADIVKIAMLNVDRALQEANLKSRMLLQVHDEIVLEIAPGERAKTEELVRREMASA----V 886

Query: 957 NLRVPLKVNIKVSNNWQ 973
            LR PL V++    +W+
Sbjct: 887 QLRAPLDVSVGDGGDWE 903


>gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 872

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/972 (31%), Positives = 495/972 (50%), Gaps = 111/972 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KL++  + +    + A+ F
Sbjct: 3   KFLVIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLIEEEKPD----YIAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y DYKA R  +PE L  Q+ L++   + F I  +E++G+EADDII T +
Sbjct: 58  DKKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIIEGFNIKILELEGYEADDIIGTIS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            +AE++   V +++ D+D +QLVS    +  + K             GI   +    +A+
Sbjct: 118 KLAEEKEMEVLVVTGDRDALQLVSDKVKVKISKK-------------GITQMEEFDEKAV 164

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
                        I       L    G+  + +     I +K   + + ++         
Sbjct: 165 LERYE--------ITPHQFIDLKGLMGDKSDNIPGIPNIGEKTAIKLLKDFG-------- 208

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
                        +E+L+    N  +L   +K          + +          P+ +D
Sbjct: 209 ------------TIENLLQ---NLSQLKGKIKENIENNKELAIMSKKLATIKRDIPIEID 253

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 K    E  +         +F SL D   K N+ +      +++  K+       
Sbjct: 254 FEEYRVKDFNEEKLL---ELFNKLEFFSLIDSIKKKNNVEIVNNHKVQKWSKV------- 303

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
                     DI++ +  L+   S +F  +      +  +   IA S         F  +
Sbjct: 304 ----------DIKKLIALLQDSKSIAFYPL-----IYEGEIKKIAFS---------FGND 339

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
           T++ID                   +  LK+ FE E F    H IK   + L   GI  + 
Sbjct: 340 TVYIDGFQ----------------IKDLKEIFEKEKFEFTTHEIKDFLVKLSYKGIECKS 383

Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEH 541
            + D  +M+Y+L+   S++D+  + +K+L       +E+    +    +++I +  + ++
Sbjct: 384 KYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADY 443

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
                  +  L   L   +    +  +   ++ P+++V+  ME++G  +D+++LK++S +
Sbjct: 444 ICSRCVHLFDLREKLMNFIEEMDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQK 503

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  +  + + IY  +G +FN++SPKQL + LF KL  P   KTKTG + T ++ LEQ+ 
Sbjct: 504 INDRIAEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLV 562

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             +N I+ +I+E+RQL+K+KSTY +     +++   RVH+ +    T TGR++S EPNLQ
Sbjct: 563 PYNN-IVNDIIEYRQLTKLKSTYINGFLPLMDE-NNRVHSNFKQMVTSTGRISSTEPNLQ 620

Query: 722 NIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G++IRRAFI       ++SADYSQIELR+LAH++    L + F N+ DIH  
Sbjct: 621 NIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLR 680

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+E+F V +EKV+P+MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF R+ 
Sbjct: 681 TASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYK 740

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ EYIEK   F ++NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSAADI 
Sbjct: 741 GVKEYIEKIVRFAKENGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADII 800

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ V+  LE  KL +K++LQ+HDELV +  ++E+    +I+  +ME      + L+V
Sbjct: 801 KMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENV----VQLKV 856

Query: 961 PLKVNIKVSNNW 972
           PL V I V  NW
Sbjct: 857 PLVVEIGVGPNW 868


>gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084]
 gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084]
          Length = 922

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/979 (27%), Positives = 448/979 (45%), Gaps = 100/979 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              + ++DG+S ++RAF+A        DG   NA+ GF NML KL+ +   +        
Sbjct: 36  RRTIAVIDGNSLMHRAFHAIRQPMSAPDGRATNALFGFFNMLVKLVDSFSPDG----VIC 91

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD      R ++ P YKA RP + E L  Q P+V+   +A  +P +E+ G+E DDI+ T
Sbjct: 92  AFDKGKPQVRIDMLPQYKAQRPPMDESLHEQFPMVKDLLRALDVPVVELAGWEGDDILGT 151

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKW-GIPPEK 178
                E  G+ + + + D+D+ QL +    +  T K       +  E V   + GI P+ 
Sbjct: 152 LARRGEAAGYEMLLFTGDRDMYQLATENVKIVSTKKGVSDVAIMTPESVDDLYHGITPDL 211

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +     L GD  DNIPG+PGIG K AA L+ +YG+L         +         + +A+
Sbjct: 212 VPDFYGLKGDGSDNIPGVPGIGPKKAAALIVQYGSL-------DEV---------IAHAD 255

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
             R                             ++   L+A     L++R   T   DA  
Sbjct: 256 EVR----------------------------GKMGESLRAHVDDALLSRKVATIRTDA-- 285

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P+  D +           +    T       ++ S         +  +    E    +
Sbjct: 286 --PIEFDFD-----------DARFPTFDAAEVSAAFSALGFTGMIRRLVRMGAGEGSAPM 332

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +    +      +            L +       I         +         +    
Sbjct: 333 AASEPSLPVSEPVGGADARALLEDALASGEWVGAAIELPQRKRGQASLFDEEPRPVLWLA 392

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                      DL +   +        + ++ + + + + ++   +   ++         
Sbjct: 393 SEKGLAHLDGDDLPLAIVRLVREGKVASDDVKALVHQVYPSDSAERAALDVT-------- 444

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
             +  R   D+ +  Y+LDS  +S  +A +  + +  +  E         P D++     
Sbjct: 445 -DVDHRRVFDVAVAGYLLDSDAASFSVADLVSREMDMSLPE---------PTDELPQ--- 491

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
              A  ++     L  LL  +L  +    ++  L+ P++ V+ QME TG+  D   L + 
Sbjct: 492 ---AALDAVGAWALCPLLARRLEEDGSKGLFCDLEMPLLRVLLQMERTGLHADAGRLAEQ 548

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS--GAKTKTGQWKTTAQD 656
           S E+   +  +   I   + E FN+ SP+QL  +LF     P+    +TK G + T A+ 
Sbjct: 549 SRELGSEIDCMVATIKADADEDFNMDSPQQLSHVLFDVWGLPTFGLKRTKKGFYSTNAKT 608

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   D   ++ IL++R+ +KIKSTY D+LP  I  R  R+HT  +     TGRL+S 
Sbjct: 609 LEDLAQQDGR-VRMILDYRERAKIKSTYLDALPADIR-RDGRIHTTLNQTVAATGRLSSS 666

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIP +++LG ++R AF  P     ++ DYSQIELR+LAH++    L   F +  D
Sbjct: 667 APNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGAD 726

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            H   AA +FGV +E+V+PQ+R  AK +NF I+YG   F LA+ LRI R+EA + I RYF
Sbjct: 727 FHAATAARVFGVPVEEVTPQLRSRAKAVNFGIVYGQQAFGLASSLRIGRAEAQEMIDRYF 786

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +PG+  Y++++ +F R+ GY  T++GR+ H  +IN+    +R+  ER A+N P+QG+A
Sbjct: 787 EAYPGVRAYLDQSVDFARKRGYAVTMYGRKRHIRDINARNFQLRSFAERTAMNHPMQGTA 846

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V + L    L +K++LQIHDEL FEVP++EI   S+++  +ME  C    
Sbjct: 847 ADIIKLAMVRVAERLRQEGLRSKLVLQIHDELDFEVPKDEIEVLSKLVKETMEGVC---- 902

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            LRVPL  ++    NW E 
Sbjct: 903 ELRVPLLADVSYGANWAEA 921


>gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513]
 gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513]
          Length = 872

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/972 (31%), Positives = 494/972 (50%), Gaps = 111/972 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KL++  + +    + A+ F
Sbjct: 3   KFLVIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLIEEEKPD----YIAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y DYKA R  +PE L  Q+ L++   + F I  +E++G+EADDII T +
Sbjct: 58  DKKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIIEGFNIKILELEGYEADDIIGTIS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            +AE++   V +++ D+D +QLVS    +  +             K GI   +    +A+
Sbjct: 118 KLAEEKEMEVLVVTGDRDALQLVSDKVKVKIS-------------KKGITQMEEFDEKAV 164

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
                        I       L    G+  + +     I +K   + + ++         
Sbjct: 165 LERYE--------ITPHQFIDLKGLMGDKSDNIPGIPNIGEKTAIKLLKDFG-------- 208

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
                        +E+L+    N  +L   +K          + +          P+ +D
Sbjct: 209 ------------TIENLLQ---NLSQLKGKIKENIENNKELAIMSKKLVTIKRDIPIEID 253

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 K    E  +         +F SL D   K N  +      +++  K+       
Sbjct: 254 FEEYRVKEFNEEKLL---EIFNKLEFFSLIDSIKKKNDVEIVNNHKVQKWSKV------- 303

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
                     DI++ +  L+   S +F  +      +  +   IA S         F  +
Sbjct: 304 ----------DIKKLIALLQDSKSIAFYPL-----IYEGEIKKIAFS---------FGND 339

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
           T++ID                   +  LK+ FE E F    H IK   + L   GI  + 
Sbjct: 340 TVYIDGFQ----------------IKDLKEIFEKEKFEFTTHEIKDFLVKLSYKGIECKS 383

Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEH 541
            + D  +M+Y+L+   S++D+  + +K+L       +E+    +    +++I +  + ++
Sbjct: 384 KYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADY 443

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
                  +  L   L   +    +  +   ++ P+++V+  ME++G  +D+++LK++S +
Sbjct: 444 ICSRCVHLFDLREKLMNFIEEMDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQK 503

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  +  + + IY  +G +FN++SPKQL + LF KL  P   KTKTG + T ++ LEQ+ 
Sbjct: 504 INDRIAEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLV 562

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             +N I+ +I+E+RQL+K+KSTY D     +++   RVH+ +    T TGR++S EPNLQ
Sbjct: 563 PYNN-IVNDIIEYRQLTKLKSTYIDGFLPLMDE-NNRVHSNFKQMVTSTGRISSTEPNLQ 620

Query: 722 NIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G++IRRAFI       ++SADYSQIELR+LAH++    L + F N+ DIH  
Sbjct: 621 NIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLR 680

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+E+F V +EKV+P+MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF R+ 
Sbjct: 681 TASEVFKVPMEKVTPEMRRVAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYK 740

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ EYIEK   F ++NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSAADI 
Sbjct: 741 GVKEYIEKIVRFAKENGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADII 800

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ V+  LE  KL +K++LQ+HDELV +  ++E+    +I+  +ME      + L+V
Sbjct: 801 KMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENV----VQLKV 856

Query: 961 PLKVNIKVSNNW 972
           PL V I V  NW
Sbjct: 857 PLVVEIGVGPNW 868


>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei]
          Length = 615

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/616 (39%), Positives = 360/616 (58%), Gaps = 21/616 (3%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +Y  +   +    W+  +      +F   T ++D   ++ + ++ S           V 
Sbjct: 16  RNYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFSVEPG-HAAYVPVA 74

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
               D+     +D         E+L+ L  + E+    K+G ++KYD  VL  YGI++ G
Sbjct: 75  HRGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNG 125

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541
              D +L SYVL+S R+ HD+ S+A + L       +++       I  D++  +Q  E+
Sbjct: 126 IEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGQGAQQIGFDEVPLAQAFEY 184

Query: 542 AIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID D L + S 
Sbjct: 185 AAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSG 244

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EI+  L++LE+  Y L+G +FNL SPKQ+G I F +L+ P   KT +G   T  + L+++
Sbjct: 245 EIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL 304

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNL
Sbjct: 305 -AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNL 363

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T  G++IR AF++PP  K++SADYSQIELRI+ HI++   L + F +  DIHR 
Sbjct: 364 QNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMLHISEDESLLRAFAHGEDIHRA 423

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+P
Sbjct: 424 TAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYP 483

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+E+T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ 
Sbjct: 484 GVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLI 543

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + +MI+V   LE   L  +M++Q+HDELV EVPE+E++   + +   M         L+V
Sbjct: 544 KLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCGVA----KLKV 599

Query: 961 PLKVNIKVSNNWQEEN 976
           PL   + V  NW+E +
Sbjct: 600 PLVAEVGVGENWEEAH 615


>gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331]
          Length = 903

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/979 (26%), Positives = 435/979 (44%), Gaps = 99/979 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G P NA+ GF +ML   L++       +HF
Sbjct: 12  NRPRLLLMDGHSLAYRAFFALPAENFTTATGQPTNAVYGFMSMLANTLRDE----APTHF 67

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R + +P+YKANR K P+    Q+ L+     A       + GFEADD+I
Sbjct: 68  AVAFDVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMRADRFAVDGFEADDVI 127

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE  GF V I++ D+D  QL++    +    K      +   E V +K+G+ P 
Sbjct: 128 ATLATQAEAAGFEVLIVTGDRDSFQLITDNVTVLYPTKGVSELTRFTPEKVQEKYGLTPG 187

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL                          G+  + L     + +K   + I ++ 
Sbjct: 188 QYPDFAALR-------------------------GDPSDNLPGIPGVGEKTAAKWINQFG 222

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A    +LV    +V           +   G      L A++  +++  +    +    
Sbjct: 223 SFA----ELVERADEV-----------KGKAGQNFRDHLDAVKMNRVLTEMVRDVELPKV 267

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E      + T   G+    EI   +  +         + +         +L       
Sbjct: 268 PAELERAPYDRTAVTGVLDVLEIRNPSLRERLLAVDPGAEEAGPPEPAAGIELDG----- 322

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        ++ + ++  W++           + T ++             T+ + 
Sbjct: 323 ------------VVLGSGEVAPWLEARAGQPLGVMTVDTWSL----------GCGTVTEI 360

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
              +      ++D +     D              L  +  +    K+ HN K    VL 
Sbjct: 361 ALAAADGAAAWLDPAELAEADE-----------QALAAWLADPGQPKVLHNAKNALRVLP 409

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G  + G   D  L +Y++  GR S  + ++A ++L    +E+  +  S   +   +D 
Sbjct: 410 EQGWRLEGISMDTALAAYLVKPGRRSFALDALAVEYLG---RELAPAPASDGQLAFGADD 466

Query: 537 QVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + +  A+   +  +L L      +L       +   ++ P   +++++E  GI  D+  L
Sbjct: 467 RAEADALMAQARAVLDLGDAFTTRLKEVGATELLYDMELPTSIMLARLERHGIAADRAHL 526

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  + +  +    +  +   G +FNL SPKQL ++LF +L  P   KTKTG       
Sbjct: 527 ESMEQQFAGAVQQAVKEAHAAVGREFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADA 586

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   ++ +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+S
Sbjct: 587 LAWLAAQTEHELPVIMLRHREQAKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLSS 644

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F + 
Sbjct: 645 TDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSG 704

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VA+++FGV    V  +MRR  K +++ + YG+S F L+ QL I   EA   +  
Sbjct: 705 EDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEARGLMDT 764

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+ +     R  GY ETI GRR +  ++NS     R   ER A+NAPIQG
Sbjct: 765 YFLRFGGVRDYLHRVVEEARSTGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQG 824

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+ + E     +I+   M  A   
Sbjct: 825 TAADIVKVAMLKVDRALTEAELTSRMLLQVHDEIVLEIAKGEREQVEEILRREMSTA--- 881

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            + LR PL V++ V  +W+
Sbjct: 882 -VELRAPLDVSVGVGRDWE 899


>gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 906

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/979 (26%), Positives = 431/979 (44%), Gaps = 98/979 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++       +H
Sbjct: 15  ADRPRLMLMDGHSLAYRAFFALPAENFTTAGGQPTNAIYGFASMLANTLRDE----APTH 70

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           FAV FD    T+R+  +P+YKANR K P+    Q+ L+     A  +P   + GFEADD+
Sbjct: 71  FAVAFDVSRKTWRSTEFPEYKANRSKTPDEFKGQVELIGELLDAMSVPRFAVDGFEADDV 130

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE  GF V I++ D+D  QLVS  T +    K      +   E V +K+G+ P
Sbjct: 131 IATLATQAEALGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVEEKYGLTP 190

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++     AL                          G+  + L     + +K   + I ++
Sbjct: 191 QQYPDFAALR-------------------------GDPSDNLPGIPGVGEKTAAKWITQF 225

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A    +LV    +V                 +     +       +NRV T    D 
Sbjct: 226 GSFA----ELVERAEEV---------------KGKAGQNFRDHLEAVKLNRVLTEMVKDV 266

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             +     D+        A+   +D       S    L         E+ P  +    L 
Sbjct: 267 E-LPKTPADLERAPYDRTAVTGVLDVLEIRNASLRERLLAVDPGAAEEEAPAPVAGVELD 325

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++   ++  W++            + D+                + 
Sbjct: 326 A------------SVLGAGELAPWLE-ARAGAPLGISTV-DSWALGQGN-------VSEI 364

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               +      F   ++  + +                         K+ HN K    V 
Sbjct: 365 ALAAADGAAAWFEPSALDEADEGAFAAWAADA------------SKPKVVHNAKGLMRVF 412

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             +G S+ G   D  L +Y++  GR S  +  ++ ++L    +   +  + +   D  ++
Sbjct: 413 PEHGWSLAGVAMDTALAAYLVKPGRRSFALDVLSMEYLHRELQPAAQDGQLAFGSDDTAE 472

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++     +  +  +L L      +L       +   ++ P  +++++ME  GI  D+D L
Sbjct: 473 AEA---LMAQARAVLDLGDAFTGRLAEVGAAELLHEMELPTSELLARMERAGIAADRDHL 529

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  + +  +    +  +   G +FNL SPKQL ++ F +L  P   KTKTG       
Sbjct: 530 EAMEQQFAGAVQQAVKEAHAAVGHEFNLGSPKQLQEVFFGELDLPKTKKTKTGYTTDADA 589

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   D+ +   +L  R+ +K++ T  + L   I     RVHT +S     TGRL+S
Sbjct: 590 LAWLATQTDHELPVIMLRHREQAKLRVT-VEGLVKTIGADG-RVHTSFSQIVAATGRLSS 647

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQN+P++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F + 
Sbjct: 648 TDPNLQNVPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFLSG 707

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VA+++FGV   +V P+MRR  K +++ + YG+S F L+ QL I   EA   ++ 
Sbjct: 708 EDLHTTVASQVFGVERGEVDPEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPGEARGLMET 767

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           +F RF G+ +Y+++     R  GY +T+ GRR +  ++NS     R   ER A+NAPIQG
Sbjct: 768 FFERFGGVRDYLQRVVEEARATGYTQTVLGRRRYLPDLNSDNRMRREAAERMALNAPIQG 827

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ V K++ +  L ++MLLQ+HDE+V E+   E     +++   M  A   
Sbjct: 828 TAADIVKVAMLRVDKAITEAGLKSRMLLQVHDEIVLEIAPGERKKVEELVRREMGAA--- 884

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            + LR PL V++ V  +W+
Sbjct: 885 -VELRAPLDVSVGVGPDWE 902


>gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
          Length = 872

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/972 (31%), Positives = 494/972 (50%), Gaps = 111/972 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KL++  + +    + A+ F
Sbjct: 3   KFLVIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLIEEEKPD----YIAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y DYKA R  +PE L  Q+ L++   + F I  +E++G+EADDII T +
Sbjct: 58  DKKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIIEGFNIKILELEGYEADDIIGTIS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            +AE++   V +++ D+D +QLVS    +  +             K GI   +    +A+
Sbjct: 118 KLAEEKEMEVLVVTGDRDALQLVSDKVKVKIS-------------KKGITQMEEFDEKAV 164

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
                        I       L    G+  + +     I +K   + + ++         
Sbjct: 165 LERYE--------ITPHQFIDLKGLMGDKSDNIPGIPNIGEKTAIKLLKDFG-------- 208

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
                        +E+L+    N  +L   +K          + +          P+ +D
Sbjct: 209 ------------TIENLLQ---NLSQLKGKIKENIENNKELAIMSKKLVTIKRDIPIEID 253

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 K    E  +         +F SL D   K N  +      +++  K+       
Sbjct: 254 FEEYRVKEFNEEKLL---EIFNKLEFFSLIDSIKKKNDVEIVNNHKVQKWSKV------- 303

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
                     DI++ +  L+   S +F  +      +  +   IA S         F  +
Sbjct: 304 ----------DIKKLIALLQDSKSIAFYPL-----IYEGEIKKIAFS---------FGND 339

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
           T++ID                   +  LK+ FE E F    H IK   + L   GI  + 
Sbjct: 340 TVYIDGFQ----------------IKDLKEIFEKEKFEFTTHEIKDFLVKLSYKGIECKS 383

Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEH 541
            + D  +M+Y+L+   S++D+  + +K+L       +E+    +    +++I +  + ++
Sbjct: 384 KYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADY 443

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
                  +  L   L   +    +  +   ++ P+++V+  ME++G  +D+++LK++S +
Sbjct: 444 ICSRCVHLFDLREKLMNFIEEMDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQK 503

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           I+  +  + + IY  +G +FN++SPKQL + LF KL  P   KTKTG + T ++ LEQ+ 
Sbjct: 504 INDRIAEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLV 562

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             +N I+ +I+E+RQL+K+KSTY D     +++   RVH+ +    T TGR++S EPNLQ
Sbjct: 563 PYNN-IVNDIIEYRQLTKLKSTYIDGFLPLMDE-NNRVHSNFKQMVTSTGRISSTEPNLQ 620

Query: 722 NIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G++IRRAFI       ++SADYSQIELR+LAH++    L + F N+ DIH  
Sbjct: 621 NIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLR 680

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+E+F V +EKV+P+MRR AK +NF IIYGIS + L+  L+I R EA +YI  YF R+ 
Sbjct: 681 TASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYK 740

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ EYIEK   F ++NGYV TI  RR +  EINS   + R+  ER A+NAPIQGSAADI 
Sbjct: 741 GVKEYIEKIVRFAKENGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADII 800

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ V+  LE  KL +K++LQ+HDELV +  ++E+    +I+  +ME      + L+V
Sbjct: 801 KMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENV----VQLKV 856

Query: 961 PLKVNIKVSNNW 972
           PL V I V  NW
Sbjct: 857 PLVVEIGVGPNW 868


>gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
 gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
          Length = 864

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/969 (28%), Positives = 471/969 (48%), Gaps = 119/969 (12%)

Query: 15  FIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFR 73
             +RAFYA P        G   NA+ GF +M+  L+   + +S     AV FD    TFR
Sbjct: 1   MAFRAFYALPVDKFSTSGGQHTNAVYGFMSMMAALVGEEKPDS----IAVAFDVGRKTFR 56

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG- 132
            E++P+YKA R   PE    Q+ ++R      GI  +  + FEADDI+AT    A +   
Sbjct: 57  TEMFPEYKAQRESAPEEFKGQVTIIRDVLDKMGITTLSRENFEADDILATLATQATQMDE 116

Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           F   I++ D+D +QLV+ +T +   ++      +   E V +K+G+ P++     AL GD
Sbjct: 117 FDTLIVTGDRDYLQLVNDSTTVLYPMQGVSKLHRFTPEAVEEKYGLTPQQYPDYAALRGD 176

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248
           + DN+PG+P +G KTA   + +Y +L+N                +L +AE          
Sbjct: 177 TSDNLPGVPKVGEKTALKWILQYEDLDN----------------LLNHAEDI-------- 212

Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308
                           +   G  L   ++ +   + + ++ T  D +   + P  L   +
Sbjct: 213 ----------------KGVVGNNLRERIEQVRLNRTLTQMITDMDLE---VGPQDLAFKS 253

Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
            E   IA   ++  +     +    + D    I   +   +  ++               
Sbjct: 254 AETATIA---QLFDELEFGVNLRERVVDAFPNIEGAEPETEDAVKVS------------- 297

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
              V ++ ++QW++  +  G A F  IT           +I++      DDT   +    
Sbjct: 298 ---VTSQSLKQWLK--DKTGVAVF--ITGDGRPGQGDATSISL-----VDDTFDAIHAEL 345

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-E 487
            DLS                    L  + E++   K  H  K    +L   GI++ G   
Sbjct: 346 ADLSAEDD--------------KALAAWLESDA-EKFLHEAKAAYHMLQGRGITLNGIAH 390

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +Y+L  G+ ++++  + Q+ L  T +       SS  +  + D+      I+++ 
Sbjct: 391 DTALAAYLLRPGQRTYELPDVYQRHLRKTLE------ASSEQLSLLDDTG----GIDSAV 440

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            I++L + L   L       +Y  L+ P++ ++++ME TGI ++ D L+      + ++ 
Sbjct: 441 AIMELTVELTKALQEIDSYQLYAELEIPLVSILAKMEATGIAVNVDTLESQQEVFANHVA 500

Query: 608 SLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-N 665
           + E+   +L+G+   NL+SPKQL  +LF  L  P   KTKTG + T A+++EQ+     +
Sbjct: 501 AEEKAARELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTG-YSTAAKEIEQLAINHPH 559

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P + ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+S EPNLQNIP+
Sbjct: 560 PFLDHLLAHREYQKLKTTL-EGLIKTVQPDG-RIHTTFNQTVASTGRLSSTEPNLQNIPV 617

Query: 726 KTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +T+ G+ IR AFI       L++ADYSQIE+R++AH+++   L + ++   D+H  V + 
Sbjct: 618 RTESGRTIRSAFIVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYKEGEDLHNYVGSR 677

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F V ++KV+ ++RR  K +++ ++YG+S F L+ QL IP  EA   +  YF RF G+ +
Sbjct: 678 VFDVPVDKVTSELRRRVKAMSYGLVYGLSAFGLSQQLSIPAGEAKKTMDAYFDRFGGVKK 737

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+       R++GY  T+FGRR +  E+ S     R   ERAA+NAPIQG+AADI + AM
Sbjct: 738 YLADVVEQARKDGYTATVFGRRRYLPELISDNRLARENAERAALNAPIQGTAADIIKVAM 797

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I V ++L      +++LLQ+HDELV EV   E+    +I+   M       I+LRVPL+V
Sbjct: 798 IRVDQAL--EGFKSRVLLQVHDELVVEVAPGELNKVQEIVEREM----DASISLRVPLEV 851

Query: 965 NIKVSNNWQ 973
           +    +NW 
Sbjct: 852 SAGTGDNWD 860


>gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201]
 gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201]
          Length = 960

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/1007 (26%), Positives = 452/1007 (44%), Gaps = 123/1007 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATP--------LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           E  L L+DG S  +RAF+A                +G+    + GF N + KL++  +  
Sbjct: 40  EKRLLLIDGHSLAFRAFFALSRAAEYGNGPGFVTSEGVHTEGVYGFVNTMVKLVREEK-- 97

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H  V FD    T R++ Y +YK  R + PE    Q+P ++   +A G+P + ++G 
Sbjct: 98  --PTHLVVSFDLEGPTLRSQEYGEYKGGRDETPEEFHGQVPNIQRVLEALGVPIVTMEGH 155

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           EADD++AT    A  E F V + S D+D  Q+++    +    +      ++D   V +K
Sbjct: 156 EADDVLATLASRAAAEDFEVLVFSGDRDAFQMITDHVTVVYPGRTPSDLRRMDAAAVYEK 215

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           + + P+    L ALTG++ DN+PG+PG+G   AA  +  YG ++++L +A +I  KK  E
Sbjct: 216 YKVAPQNYPDLAALTGETADNLPGVPGVGPGFAAKWITAYGPVDSLLEHAGQITGKK-GE 274

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E  E  R +RKL  L TD+P+ I L    L   +                  RVA  
Sbjct: 275 ALRENEELVRRNRKLNRLVTDLPLEIDLSATALPKAHAE----------------RVAEV 318

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
           +D                         E++  + ++     + + QTS  +         
Sbjct: 319 FD-------------------------ELEFGSQLRGRLLEAFAAQTSGDDVAALAPVTD 353

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           + R                +    +   W++  +       + +                
Sbjct: 354 VTR----------------VHTAPEFADWLEAQDQDAPVVVRRL---------------- 381

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
            + D K  +  +V  + +  +   + D    +   +E+   ++++  +    K+   +K 
Sbjct: 382 -SADPKAPSGEEVTALVLTGTTGAALDLVAAD---QELTRAVEQWLGDTTAAKVVDGLKD 437

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKS 526
               L + GI + G  +D+ L  Y++     S+++ S   + L        +    +   
Sbjct: 438 LYHGLIQRGIVLAGVVDDVQLSGYLVRPALRSYELESQLAQHLEVEVPAAEESTGGADAH 497

Query: 527 SIPIDKISDSQV-----QEHAIENS---NVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
                 + D            +  +       +L   LR  L  +  L +   L+ P+  
Sbjct: 498 GQTALALEDEDALGGVSDAVLVREATLGRACRELSEHLRALLEADGQLGLLTELEMPLAV 557

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           ++++ME TGI +D+  +  +  ++   +    E        + NL S KQL  ++F +L 
Sbjct: 558 ILARMEATGIAMDRPGIDVLFEDLQHPIDQAFEQAQAQIDHEVNLGSTKQLQAVMFDELG 617

Query: 639 FPSGAKTKTGQWKTTAQDLEQI-----NCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            P   KTKTG     +   + I     +   +  +  ++ WR+ SK+K   A  L + I 
Sbjct: 618 LPKTKKTKTGYTTDASAVADLIGKVSPDTAGSRFLVALMNWREYSKLKQIVAG-LRDAIA 676

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-----KKLISA 748
           +   R+HT Y      TGRL+S  PNLQNIP++T+ GQ+IR  F+         + L++A
Sbjct: 677 EDG-RIHTTYQQTVAATGRLSSTGPNLQNIPVRTEQGQRIRDVFVVGEDTQGPFECLMTA 735

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIE+RI+AH++    L + F    D+HR V + +F V  E V+PQMR   K +++ +
Sbjct: 736 DYSQIEMRIMAHLSGDEGLIEAFRGGEDLHRFVGSRVFDVAPEDVTPQMRSKVKAMSYGL 795

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YG+S + L+ QL I   EA   +  YF RF G+ +++       R  GY ETI GRR +
Sbjct: 796 VYGLSSYGLSQQLHIGVDEARTMMSGYFERFGGVRDFLRGVVEEARSKGYTETIDGRRRY 855

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             ++ S     R   ER A+NAPIQGSAADI ++AMI V ++L D +L +++LLQ+HDEL
Sbjct: 856 LPDLTSDNRQARQAAERMALNAPIQGSAADIIKKAMIGVDRALRDGQLRSRVLLQVHDEL 915

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           + EV   E     +I+   M  A      L VPL VN+     W + 
Sbjct: 916 IVEVAPGEREEVERILRTEMAGAA----ELTVPLDVNVGTGRTWHQA 958


>gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
 gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
          Length = 880

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/985 (31%), Positives = 492/985 (49%), Gaps = 121/985 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG S + RAFY  P LS    GL  NAI GF N+++K+L     E  A + AV 
Sbjct: 2   KKLVLIDGHSILNRAFYGVPELSNSQ-GLHTNAIYGFLNIMFKILD----EEAADYIAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR++ Y +YK  R  +P+ L  Q+P+++    +  IP +  +G+EADDII T 
Sbjct: 57  FDLSAPTFRHKAYAEYKGTRKSMPDELREQVPIIKDVLSSMNIPILTKEGYEADDIIGTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID------IEHVIKKWGIPPEK 178
               + E   V+IIS D+DL+QL      +      + +        E VI ++G+ P +
Sbjct: 117 AKKYQSEDVFVSIISGDRDLLQLSDKHIKIRIPKTSKGVTTTHDYLPEDVISEYGVTPHE 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GD+ DN+PG+P                          I +K   + I EY  
Sbjct: 177 FIDVKALMGDTSDNVPGVPS-------------------------IGEKTATKIIQEYHS 211

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGP--RLISFLKALEFTKLINRVATTYDCDA 296
                           I   +EH+           L   +K  +F+K++  + T    + 
Sbjct: 212 ----------------IENAIEHVNELKPQRASKALSENIKEAKFSKMLVTIVTDAPIET 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +  V ++ T E+     + E                             K FL+R +
Sbjct: 256 ELSDMKVGNLYTKESLEWINKLEF----------------------------KSFLKRYE 287

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI---ITDTMDAFHSKPIAIAIST 413
            +          + I +  D     +KL++       I    T       S   AI+I T
Sbjct: 288 NVETAASIKLDISNITDLNDWNTLYEKLKSANEFGIAICFDETAIKSYTVSSLYAISI-T 346

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           LD +      +E I   L      D+       K+ +  LK        +K   ++K   
Sbjct: 347 LDNRTYLIKDIEQIDDILKRIICLDA-------KKYILSLKPL------IKQVKDMKLA- 392

Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530
                     + F D+ + +Y+++  + S+ +  IA+ ++     ++ E++   K S  +
Sbjct: 393 ----------KNFYDLSVAAYLINPLKDSYFVEDIARDYMGSGVSSKAEMIGKSKLSE-V 441

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            K +D + +++    S V L     L  KL   +L  +YE ++ P+I  +++ME TG+++
Sbjct: 442 LKFNDEKAEKYFASESYVALFASDYLLKKLNELELTRLYENVELPLIYSLARMENTGVRV 501

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D+  LK  +  + + +  LE +I D +GE FN++SPKQLG+ILF KLK   G KTKTG  
Sbjct: 502 DEKRLKDYADTLLEKISKLEASIIDKAGESFNINSPKQLGEILFGKLKLSGGKKTKTGY- 560

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +TA D+ +    ++ II++ILE+RQL+K+ STYA  L  +I     R+H  ++   T T
Sbjct: 561 -STAADVLEKLAPEHEIIRDILEYRQLTKLNSTYATGLAGYIRDDG-RIHGSFNQTITAT 618

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR++S +PNLQNIP++T++G KIR  F+  P    + ADYSQIELR+LA ++    L + 
Sbjct: 619 GRISSTDPNLQNIPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRVLASMSGDEKLIES 678

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           +  + DIH   AA++F V ++KV+P++RR+AK +NF ++YGIS F L+  L I R EA D
Sbjct: 679 YHTAADIHAATAAQVFHVPLDKVTPELRRNAKAVNFGVVYGISAFGLSEDLSISRKEALD 738

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF  + G+  +++K     ++ GYV+T+FGR     EI S     R+  +R A+N+
Sbjct: 739 YINNYFKIYEGVKRFLDKQVADAKEKGYVKTMFGRIRPIPEIKSSNFMTRSFGDRVAMNS 798

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI V ++L        ++LQIHDEL+ EV ++E+    +I+  SM +
Sbjct: 799 PIQGSAADIMKIAMIRVDEALNKSGFDANIVLQIHDELLVEVRKDEVYKVKEIVERSMRE 858

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           A    ++L+VPL+V+  +   W E 
Sbjct: 859 A----VSLKVPLEVDAHIGKTWLEA 879


>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 956

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/1022 (30%), Positives = 483/1022 (47%), Gaps = 131/1022 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA-TPL-----------------LSRKHDGLPVNAIAGFC 42
           M KE +L L+DGSS +   +Y   P                  + +   G+  NAI GF 
Sbjct: 18  MDKE-YLLLIDGSSLLSTQYYGNLPREIMFAKTNEEREAFYEKIMQTSMGIYTNAIYGFM 76

Query: 43  NMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102
               K+L+  +     +H AV +D    TFR EI  DYK  R + P  L  Q  L +   
Sbjct: 77  RTFLKILREQK----PTHVAVTWDLSRDTFRREIDSDYKGTRGETPSPLKEQFKLCQEIL 132

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------- 155
               +       +EADD   +     E E   V I++ D D +QLVS  T L+       
Sbjct: 133 AKMNVMQFMDSKYEADDFCGSIASKLEGE-IPVRILTKDTDYLQLVSENTKLWLMFTTQE 191

Query: 156 -----------------DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
                               K  ++  E V  ++GI PE++  L++L GD  DNI G+ G
Sbjct: 192 KADDLFKKYEIKKSTANIPDKAFELTPELVKSEYGIKPEQVADLKSLVGDKSDNIKGVAG 251

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258
           +G  +A  L+ EYG +E                N+ E+               D      
Sbjct: 252 VGEASAVPLINEYGTVE----------------NLYEHIRNL-----------DKKQEKE 284

Query: 259 LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET 318
           ++                   +    I R   TY    ++ E V         K   I+ 
Sbjct: 285 IKDYW----------------KTKLGIKRSPLTYLLKTSDTEIVGEKSAIISKKLAIIKK 328

Query: 319 EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQ 378
           +ID     +     SL       N     +KL  + L         N+         +  
Sbjct: 329 DIDLRELNR----DSLKLNIDIENGNAEFKKLEFKSLNLKDAISHENED-ENNEEKHECN 383

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
             +  ++ I   S     + M+    + I I+ +  D    +   ++ I I      S  
Sbjct: 384 IKINSIDNIEEFS-----ELMNKMKDR-IYISYTLNDSSIYSKLDLKHIIIISEEDISNV 437

Query: 439 STGKNTLTKE---ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSY 494
              +    ++    +  LK   EN+   K+ H+ K     L++  I+++ F+ D  + +Y
Sbjct: 438 IDFEKISREDNIKSIELLKNVMENDKVKKVIHDGKNLVTFLNKNNITVKEFDFDTAIAAY 497

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +LDS +S +++  + +K+L+   KEI         I+  ++  +  +       I +L++
Sbjct: 498 LLDSAQSKYNLTELIEKYLN---KEIDG-------IESENEGILGSY-------IPKLYM 540

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           +L+  +  EK+  +Y  ++ P+I V+S ME  G  I+Q +L ++  +    +   ++ IY
Sbjct: 541 ILKSNIEKEKMDKLYYEVEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIY 600

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           +L+ E+FN+SSPKQLG ILF KL  P   KTKTG + T  + LE++    + II  I+ +
Sbjct: 601 ELADEEFNVSSPKQLGKILFEKLDLPIIKKTKTG-YSTNQEVLEKLL-DKHEIIPKIMYY 658

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQ++KI STY + L N I++   R+H+ ++   T TGRL+S +PNLQNIPI+ +LG++IR
Sbjct: 659 RQITKISSTYVEGLKNVIDEDG-RIHSNFNQTVTTTGRLSSTDPNLQNIPIRHELGREIR 717

Query: 735 RAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           + FI       L+S DYSQIELR+LAHIA    +   F++  DIH   A+E+F V +E V
Sbjct: 718 KVFIPLQEGDTLVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIHTKTASEVFKVPVEDV 777

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +  MR  AK +NF I+YGIS F L+  L+IP++EA +Y+  YF R+P I  Y+E   +  
Sbjct: 778 TSLMRSRAKAVNFGIVYGISAFSLSQDLKIPKAEAQEYMNIYFERYPKIKSYLENIVSEA 837

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
            + GYV TI  RR    EIN+    ++ + ER A+NAPIQGSAADI + AMI+V+  L++
Sbjct: 838 EEKGYVLTILNRRRFIPEINASNKIVKALGERLAMNAPIQGSAADIIKIAMINVYNKLKE 897

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            K+ +K++LQ+HDEL+  V E E     +I+V  ME A    I L V L V+I     W 
Sbjct: 898 SKMQSKLILQVHDELILNVKENEFEEVKKIVVDEMENA----IKLSVGLDVDINSGKTWY 953

Query: 974 EE 975
           E 
Sbjct: 954 EA 955


>gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 884

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/971 (26%), Positives = 431/971 (44%), Gaps = 98/971 (10%)

Query: 10  VDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +DG S  YRAF+A P  +     G   NAI GF +ML   L++       +HFAV FD  
Sbjct: 1   MDGHSLAYRAFFALPAENFSTASGQTTNAIYGFASMLANTLRDE----APTHFAVAFDVS 56

Query: 69  AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
             T+R++ YP+YKANR   P+    Q+ L+             + GFEADDIIAT    A
Sbjct: 57  RKTWRSKDYPEYKANRSATPDEFKGQVELIGELLDTMNAVRFAVDGFEADDIIATLATQA 116

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184
           E EGF V I++ D+D  QLVS  T +    K      +   E V +K+G+ P +     A
Sbjct: 117 EAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVQEKYGLTPSQYPDFAA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD  DN+PGIPG+                          +K   + I ++   A    
Sbjct: 177 LRGDPSDNLPGIPGV-------------------------GEKTAAKWINQFGSFA---- 207

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +LV    +V                 ++    +       +NR  T    D    +PV  
Sbjct: 208 ELVERADEV---------------KGKVGQSFRDHLEAVKLNRHLTELVRDVELAKPVAG 252

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                 ++          +    + +   L+        E    +  +E           
Sbjct: 253 LERAPYDRSALKNFLEILEIRNPSLRERLLAVDPGATEDEAPAPEAGIELDG-------- 304

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                 ++ T ++  W++                  +  ++P+ +A  T           
Sbjct: 305 -----SVLATGELAPWLE------------------SHGAQPLGVATVTSWSLGTGQVSE 341

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             +          D+T  +   +   +    +  +    K+ HN K    V   +G  + 
Sbjct: 342 IALAAADGKAAWFDTTRLDEADERAFAA---WIADPARPKVMHNAKDALRVFPEHGWRVD 398

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           G   D  L +Y++  GR S  + +++ ++L           + +   D+ +++      +
Sbjct: 399 GITMDTALAAYLVKPGRRSFALDALSVEYLHRELVPAAADGQLAFGTDEHAEADA---LM 455

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             +  +L L      +L       +   ++ P  +++++ME  GI  D+  L+ +    +
Sbjct: 456 AQARAVLDLGDAFTARLEEVGATELLHDMELPTSELLARMERHGIAADRAHLESMEHLFA 515

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             +    +  +   G +FNL SPKQL ++ F +L  P   KTKTG               
Sbjct: 516 GAVQQAVKEAHATVGHEFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQT 575

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           ++ +   +L  R+ ++++ST  + L   +     R+HT +S     TGRL+S +PNLQN+
Sbjct: 576 EHELPVIMLRHREQARLRST-VEGLIKTVAADG-RIHTTFSQTVAATGRLSSTDPNLQNV 633

Query: 724 PIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           P++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  D+H  VA
Sbjct: 634 PVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVA 693

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +++FGV   +V  +MRR  K +++ + YG+S F L+ QL I   EA   +  YF RF G+
Sbjct: 694 SQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEARALMDTYFERFGGV 753

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +Y+    +  R  GY  T+ GRR +  ++NS     R   ER A+NAPIQG+AADI + 
Sbjct: 754 RDYLRHVVDEARATGYTATMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKI 813

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ V ++L +  L++++LLQ+HDE+V E+   E      I+   M  A    + L  PL
Sbjct: 814 AMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERDEVETIVRREMSSA----VELSAPL 869

Query: 963 KVNIKVSNNWQ 973
            V++ V  +W+
Sbjct: 870 DVSVGVGADWE 880


>gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
          Length = 878

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/976 (29%), Positives = 458/976 (46%), Gaps = 121/976 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +   ++DGSS I+RAF+A P L+ +  G+   A+ G CNML KLL   +      + AV 
Sbjct: 16  DKFLVIDGSSLIHRAFFALPPLTTRQ-GIHTGAVYGLCNMLLKLLDEVKPR----YMAVA 70

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+++Y +YKA R   P  L  Q PL     +  GI  +E+  +EADDII T+
Sbjct: 71  FDKSRKTFRSKLYAEYKAQRKPTPSELSEQFPLAMKVLECMGIRTLELDDYEADDIIGTF 130

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
              A  E   V I++ D+D +QL+   T ++ T +     +  D       +        
Sbjct: 131 AVQAPPE-VDVIIVTGDRDELQLIDKRTKVFYTKRGISDIQVFDEAEFAANY-------- 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                            G+  K    L    G+  + +     +  K   + I EY    
Sbjct: 182 ----------------EGLQPKQLIELKGLMGDTSDNIPGVPGVGPKTAMKLIKEYG--- 222

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                      N   ++  ++ +    L  ++    +    + +
Sbjct: 223 ---------------------------NVETVLENIEKVSGKSLKTKLTDNKESALLSKQ 255

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                          I TE   DT ++T +   + ++   +          LE      +
Sbjct: 256 LAT------------ICTEAPVDTAVQTYELQPIKEEARTL-------MQDLEFRNMYER 296

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           + +                + + +E  G     + T  +       +  A   +      
Sbjct: 297 FAVVLGGAQ-----DSFDLFGEAVEQEGLQQIAVNTPQLAEELFAALGKAKQPVTVHAQV 351

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           + ++  ++   +   + +                 +  +    KI  + K          
Sbjct: 352 AGQLPELYFSSAEILADNKIYLLDAQSGCWDKFDSWLSDAGSKKITIDSKELYKCCLCRK 411

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           + ++G  +D+ L  YV D G SS+ +  ++++ L             + P + +      
Sbjct: 412 VKVQGIVDDVALAGYVADPGHSSYSLEDLSRRNLP---------GVLATPCENL------ 456

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
                     LQL   LR  L  ++ L +YE  + P+  V++QME  GI  D++LL Q++
Sbjct: 457 ----------LQLASKLRSLLAEQQQLKLYEEFELPLAPVLAQMEFAGITPDKELLLQLN 506

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            ++   +  LE    + +GE+FNL SPKQLG ILF +L+ P   KTKTG + T A+ LE 
Sbjct: 507 EDMGHRIAKLEALAQEQAGEEFNLKSPKQLGVILFERLQLPVIKKTKTG-YSTDAKVLEA 565

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +  G +P+I  ILE R+L+K++STY + L   IN +T R+HT +    T+TGRL+S +PN
Sbjct: 566 LE-GKHPLIATILEHRKLAKLQSTYLEGLQPLINPKTGRIHTHFQQTVTVTGRLSSTDPN 624

Query: 720 LQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP +T+  ++IRR F+       L+S DYSQ+ELRILA IA+   L + F +  DIH
Sbjct: 625 LQNIPARTEESRQIRRIFVPGAGYDLLMSCDYSQVELRILACIAQDELLLEAFRHGQDIH 684

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AAE+FGV +++V+PQMR  AK +NF I+YGIS F LA QL + R EAA YI  YF R
Sbjct: 685 ARTAAEVFGVPLDEVTPQMRSRAKAVNFGIVYGISDFGLAKQLDVGRKEAAGYIASYFER 744

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           + G+ +Y+E      R+ GYV T+ GRR +  EI S   ++R+  ER AIN PIQG+AAD
Sbjct: 745 YTGVKKYMEDIVAEAREQGYVSTLMGRRRYLPEIRSSNFNLRSFAERTAINTPIQGTAAD 804

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I ++AMI+V + L+  +  +++LLQ+HDELV EV E+E    +Q++  +ME A     +L
Sbjct: 805 IMKKAMIAVQRELDKAQCKSRILLQVHDELVLEVTEDEKEQVAQLVRTAMEGAA----SL 860

Query: 959 RVPLKVNIKVSNNWQE 974
            +PL  ++    +W E
Sbjct: 861 DIPLLADVNCGRDWAE 876


>gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 880

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/991 (30%), Positives = 474/991 (47%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K PE    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+                                L    G+  + +   ++I +K   +
Sbjct: 177 MGLT-------------------------PNQFIDLKALMGDKSDNIPGVTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + ++                      LE +  E  +G           F     +    
Sbjct: 212 LLHKFG--------------------SLEGI-YEHIDG-----------FKASKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAAISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLSLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKAIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILTDGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047]
 gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047]
          Length = 610

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/626 (37%), Positives = 371/626 (59%), Gaps = 22/626 (3%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +   +  I+   Y  ++   D+ +W++KL +    +    TD++D   +  + I+ + L+
Sbjct: 2   ENTPKIQIDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LE 60

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             +     ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +
Sbjct: 61  NGEAAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNSHKIGQNIKFDESI 111

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
             R+GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  +
Sbjct: 112 FARHGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFN 170

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I   Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ I
Sbjct: 171 QIPLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLI 230

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   KT  G  
Sbjct: 231 DSDALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAP 290

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + LE+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T T
Sbjct: 291 STNEEVLEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTAT 349

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   
Sbjct: 350 GRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINA 409

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A  
Sbjct: 410 FSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQK 469

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           Y+  YF R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINA
Sbjct: 470 YMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINA 529

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           P+QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME 
Sbjct: 530 PMQGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEA 588

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976
           A      L VPL V + V  NW E +
Sbjct: 589 AA----ELVVPLIVEVGVGKNWDEAH 610


>gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6]
          Length = 861

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/980 (28%), Positives = 454/980 (46%), Gaps = 129/980 (13%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S   RAFY   LL+ K DG   NAI GF N+L  LL+ S  +      AV F
Sbjct: 2   RLLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIFGFLNILLSLLKESEPDE----VAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++Y  YKA R K+P+ L  QLP++R      G   +  +G+EADDI+ T  
Sbjct: 57  DLKAPTFRHKMYDGYKATRHKMPDELAAQLPVIRQLLALLGYREVTAEGWEADDILGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV------KEEKIDIEHVIKKWGIPPEKM 179
                      + + D+D +QLVS TT +          K   +D++ V +K+G+ P ++
Sbjct: 117 AACAARSDDCFLATGDRDSLQLVSDTTTVLLATTALGRSKTVTMDVDAVKEKYGVTPRQL 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +++L GD+ DNIPG+ GIG K+A  L+Q+YG+LE +  +      K  +    E+   
Sbjct: 177 IDVKSLMGDTSDNIPGVKGIGEKSAFALIQKYGSLEGVYAHLDDTTDKTIKPKQREH--- 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                 L   R    ++  L  +  +                             D A  
Sbjct: 234 ------LAEDRAMAELSYTLGTIRTDAP--------------------------IDTAEG 261

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
              V + N  E   +  E E+             LSD T   + E+ P +   E      
Sbjct: 262 AYAVGEGNKAEAVRLMQELELHSLIAR-----FGLSDITPAADPERAPAEPLPEAE---- 312

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI-STLDQKD 418
                                                  + A  ++P    + +      
Sbjct: 313 ---------------------------------------LAALPAEPKGHYLVAARPAVM 333

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN-IKYDKLVLH 477
                        + +  QD T     ++++L    +  +N+       +        + 
Sbjct: 334 GKQGVRIVELQPAAWYAVQDKTVFPLESEDLL----RLLDNKDVTLDVFDSAPLYARAMA 389

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
             G       D  L +Y+LD+  S ++++ +   +                     +D+ 
Sbjct: 390 AGGWGSSIVWDGKLAAYLLDASASKYNLSELIISY--------------------RADAA 429

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                  ++  +  L+  ++ ++   +   +Y  ++ P+  V++ M   GI +D++ +++
Sbjct: 430 FTCEKWPDAGALADLFAKMKTEITALEEDSLYNDIEFPLAQVLADMTRIGILVDKEGIEK 489

Query: 598 VSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
              ++   L  +   I+  +G   FN +SPKQLG++LF  +  P G KT+ G W T A+ 
Sbjct: 490 FGVKMRSELEDVLTRIHMETGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRG-WSTDAET 548

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +   D P++++IL++R   K+ STY + L   I +   R+HT ++     TGRL+S 
Sbjct: 549 LEALR--DYPLVEDILQYRAYQKLNSTYVEGLLKVIAEDG-RIHTRFNQTEARTGRLSSD 605

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPI+T+LG ++R  F++ P   L+ ADYSQIELRILAH+     + Q F    D
Sbjct: 606 NPNLQNIPIRTELGSQLRAYFVARPGCVLVDADYSQIELRILAHVTGDEHMQQAFLTGED 665

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AA+I+G+ +E+V+P++R  AK INF I+YG   + L+  + +   EA  ++K Y 
Sbjct: 666 IHRSTAAKIYGLPLEQVTPRLRSSAKAINFGIMYGKGAYSLSKDIGVSVKEADAFLKNYL 725

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             FP +  Y++KT +  R  GYV T+FGRR    E+ S   +IR   ER A N PIQG+A
Sbjct: 726 ATFPKVSGYMDKTISDARSCGYVSTLFGRRRSLPELASNNHNIRASGERMARNTPIQGTA 785

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ V + L D K+ ++++L +HDEL+ E PE E   A+ I+   ME      +
Sbjct: 786 ADVIKLAMVRVWRRLRDEKMESRLILTVHDELIVEAPEAEAAKAAAILQEEME----GCV 841

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
           N  VPL   +    NW E +
Sbjct: 842 NYAVPLSTEVHQGKNWLEAH 861


>gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032]
 gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032]
          Length = 899

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/980 (26%), Positives = 437/980 (44%), Gaps = 103/980 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H  V
Sbjct: 6   PRLLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQ----PTHIVV 61

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR E Y +YKA R + P     Q+ LV+    A  IP +E +G+EADDIIAT
Sbjct: 62  AFDVSRRSFRTEKYAEYKAGRSETPTDFKGQVSLVKEVLAALRIPVVEKEGYEADDIIAT 121

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKM 179
               A  +G  V I + D+D  QLV     +    K      ++D   V  K+G      
Sbjct: 122 LACQARDQGMPVLISTGDRDAFQLVDEQITVLYPRKGVSDLARMDPAAVEAKYG------ 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
                              +G      L    G   + L     +  K   + I  Y   
Sbjct: 176 -------------------VGPGRYRDLAALVGETSDNLPGVPGVGPKTAAKWINTYGGV 216

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCN--GPRLISFLKALEFTKLINRVATTYDCDAA 297
             +   +             + +  +  +    RL   ++  E   L+  +      + A
Sbjct: 217 EGI---IARA----------DEIKGKAGDSLRERLADVIRNYEINCLVADLDLPIRPEDA 263

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +    +                      T QF  L D+  +      P+         
Sbjct: 264 RWQGWDREAVHQ---------------VFDTLQFRILRDRLYQYLDAVEPEAEAG----- 303

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                  + +   +     +  W++   + G+                P+ +A+      
Sbjct: 304 ------FDLTGEVLTAPGALTGWLETHASPGT----------------PVGVAVKLDTGP 341

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +       T     +   +      + L +   + L  +  +E   K+ H+ K   L   
Sbjct: 342 NRRHTATVTGLALATADGAAAWFDPSRLDESDEAALAGWLADETRPKVLHDSKPAVLAFA 401

Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS-D 535
            +G ++ G   D  + +Y+    + S+D+  +A ++L +    +       + +D +  D
Sbjct: 402 AHGWTLAGIARDTQIAAYLARPDQRSYDLTDLALRYL-HRELRVDVPDDGQLTLDGLGGD 460

Query: 536 SQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            + +++ + ++   L L   +  +L    E+   +   ++ P++ V++ ME  GI  D D
Sbjct: 461 GEAEQNLMLHARATLDLADAIDAELSRDGEQSARLMAGVELPLMRVLAGMERVGIAADTD 520

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++ A  +  + +  +  Y + G +FNL SPKQL +ILF +L  P   K KTG     
Sbjct: 521 YLSELEAHFAAEVKAAAQAAYAVIGREFNLGSPKQLQEILFGELNLPKTKKIKTGYTTDA 580

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                     ++P++ ++L  R ++++KST  D L   ++    R+HT ++     TGRL
Sbjct: 581 DALQWLYAQTEHPLLHHLLRHRDVARLKST-VDGLLKSVSDDG-RIHTTFNQTVAATGRL 638

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S EPNLQNIPI+T+ G++IRRAF+       L++ADYSQIE+RI+AH++    L + F 
Sbjct: 639 SSTEPNLQNIPIRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALIEAFN 698

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  D H   A+ +F V + +V+P  RR  K +N+ + YG+S F L+ QL I   EA   +
Sbjct: 699 SGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNYGLAYGLSAFGLSQQLGITAEEARGLM 758

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF  F G+ +Y+++     RQ+GY  TI GRR +  ++ S     R + ER A+NAPI
Sbjct: 759 EVYFAGFGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAERMALNAPI 818

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AM+ V  +L D  L ++MLLQ+HDELVFEV   E  T  +++   M  A 
Sbjct: 819 QGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHDELVFEVAPGERATLEELVRREMGGA- 877

Query: 953 LPKINLRVPLKVNIKVSNNW 972
                L VPL+V++    +W
Sbjct: 878 ---YPLSVPLEVSVGEGRDW 894


>gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1]
 gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus
           pyogenes SSI-1]
          Length = 880

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/991 (30%), Positives = 474/991 (47%), Gaps = 128/991 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+                                L    G+  + +   ++I +K   +
Sbjct: 177 MGLT-------------------------PNQFIDLKALMGDKSDNIPGVTKIGEKTGLK 211

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + ++                      LE +  E  +G           F     +    
Sbjct: 212 LLHKFG--------------------SLEGI-YEHIDG-----------FKASKMKENLI 239

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            D D A +   +  INT     I ++  +     + +          S+   E    +L 
Sbjct: 240 NDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLK 290

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                ++ Q P+   SY ++ N                  F+ + D  +      I  A 
Sbjct: 291 KGLASQMPQEPVAAISYQEVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAW 343

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +Q   +         DLS+  +                 K+ F+        ++ K 
Sbjct: 344 GHGEQIYAS--------TDLSLLAT--------------DSFKQVFQKP---IATYDFKR 378

Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKS 526
            K++L   GI +     D  L +Y+L S    +++++IA+ +   + +E      K  K 
Sbjct: 379 SKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKR 437

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           ++P   +    + EH      V+L     +  KL   + L +Y+ ++ P+ +V+++MEI 
Sbjct: 438 AVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIE 493

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           GI++++  L+ ++ +    + +L + IYD++G++FN++SPKQLG ILF K++ P     K
Sbjct: 494 GIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKK 553

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           T    +TA D+ +      PI+  IL++RQ++K++STY   L ++I    + +HT Y   
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQD 612

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765
            T TGRL+S++PNLQNIPI+ + G+ IR+AF        L+S+DYSQIELR+LAHI+   
Sbjct: 613 LTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDE 672

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L   F    DIH   A  +FG++    V+   RR+AK +NF I+YGIS F L+  L I 
Sbjct: 673 HLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGIT 732

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
           R +A  YI  YF R+PGI  Y+E      +  GYVET+F RR    +INS   ++R+  E
Sbjct: 733 RKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAE 792

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R AIN+PIQGSAADI + AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++
Sbjct: 793 RTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLV 852

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             +ME A    ++L VPL V+     +W E 
Sbjct: 853 KDTMEAA----VDLAVPLCVDESTGQSWYEA 879


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/978 (28%), Positives = 458/978 (46%), Gaps = 119/978 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L+L+DGS+FI+R FYA   + R  DG P NA+     +L +LL+  R     ++F 
Sbjct: 10  RGEPLWLMDGSAFIFRGFYAYQSMQR-SDGFPTNALFIVTRILLRLLREER----PTNFC 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            + D    TFR+E++P YK  R   PE L+ QL  ++   +A G+P +   G EADD IA
Sbjct: 65  FVLDGKGPTFRHELFPPYKMQRAVTPEPLVQQLDPIKRMVRALGLPLVVSDGCEADDCIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMV 180
           +       E   V I+ TDKDL Q +     L+D   +E+  + +     + G+ P +  
Sbjct: 125 SLAARHRSE-RPVVIVGTDKDLKQCLHDNVVLWDPAAKEEKLVTLADFTAETGLAPARWP 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QA+ GDS DNIPGIPG+G KTA  + +++G+LE+I      +      E +       
Sbjct: 184 DFQAVIGDSSDNIPGIPGVGPKTAEKIFKDFGSLEDIRDRVGELP-----EKLRA----- 233

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                                         +    L+ +   + +  + T    +    +
Sbjct: 234 ------------------------------KFEPHLETMFLYRQLTTLTTDACPEVTLPD 263

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             V  ++  E   +  E E+ +     T + S + +  S  ++ ++  ++        S 
Sbjct: 264 LAVRPLDPAEAGAMLREFELRQL----TRELSGMIENGSVTSAPRSTSQVQA------SL 313

Query: 361 YPINNDSYTKIVNTKDIQQW--VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +         +   KD  +    + +       F          +    A A++  D + 
Sbjct: 314 FGDEGRRADPVNTCKDPGKLPDCEGVAAAVVPVFD---------NGAITAYAVAAGDCES 364

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             S  V+     L+ H S+          ++   L+    +                   
Sbjct: 365 RYSGPVDA----LARHLSR---AAQVAAPDVKHLLRT---DP----------------AW 398

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            GI    + D+ L +Y+L+     +    +A +W     +                    
Sbjct: 399 AGIDPARWFDLGLAAYLLNPEERDYGWPRLAARWGDELERSSGNPG-------------- 444

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                    + L++   L  +L   +L  +   L+ P+I V++ ME  GI +D D     
Sbjct: 445 --------LLALEMAGALSGRLAGAQLSRLMRTLEMPLIPVLADMEAAGIAVDLDAFAAF 496

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E+   L  L  ++Y  +G +FN+ S +QL ++LF  L  P+G KTK GQ  T    LE
Sbjct: 497 LREVQGELDRLTRDVYKAAGGEFNIRSSQQLAELLFGTLGLPTGGKTKGGQTSTAQDVLE 556

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++  G +P++  ILE+R+L K++STY + LP  ++    R+HT ++  +T TGRL+S  P
Sbjct: 557 KL-SGRHPVVDAILEFRKLEKLRSTYLEPLPRLVDGAG-RIHTTFNQLATATGRLSSSNP 614

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++ DLG+++R  F + P  +L+SADYSQ+ELR+LAH+++   L   F    DIH
Sbjct: 615 NLQNIPVRGDLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIH 674

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+ ++ V  ++VS   RR+AKTINF +IYG+ P +LA +LRIP +EA  +I+RYF +
Sbjct: 675 SRTASLLYDVAQDQVSTDQRRNAKTINFGLIYGMGPQKLAQELRIPLTEAKAFIERYFSK 734

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
              + E+ ++ +   R+ GYV T+ GRR    EI+S  + +++   R AIN  IQGSAAD
Sbjct: 735 LQKLREFYDEAETTARELGYVTTMAGRRRLLPEIHSENTQLKSQARRQAINTLIQGSAAD 794

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++ H   E   L  +++LQ+HDEL+ EVP +    A + +   M       + L
Sbjct: 795 IIKLAMLAAHADPELRALNARLILQVHDELLLEVPADNAPAAGERLAAIMSGVRPGGVAL 854

Query: 959 RVPLKVNIKVSNNWQEEN 976
            VPL V+     NW   +
Sbjct: 855 DVPLAVDWGQGENWGVAH 872


>gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
 gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
          Length = 903

 Score =  655 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/985 (29%), Positives = 466/985 (47%), Gaps = 98/985 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRAF+A   ++ K    P  A+ GF N L  ++     +    +    
Sbjct: 2   KRAVLLDVSAIMYRAFFA--HMNFKTKNEPTGAVFGFTNTLLSIIDEFSPD----YIGAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    T  R+E Y DYK+ R  IPE L+ Q+P +      FGI   +I G EADD+I  
Sbjct: 56  FDVKRSTLKRSEKYKDYKSARKPIPEDLVTQIPRIEDLLDCFGIEKFKIDGHEADDVIGA 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-------KIDIEHVIKKWGIPP 176
                  +   V II+ DKDL QLV     +    K E           E V+++ G+ P
Sbjct: 116 LAKKLSADNIEVYIITGDKDLSQLVDDNINIALLGKGEGKERFKILRTEEDVVEQLGVKP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRE 231
             +  L  L GD+ D IPG+  IG K A ++LQ+Y NLE +  +   +       K   +
Sbjct: 176 NDIPDLFGLIGDASDGIPGVRKIGSKKALVMLQKYKNLEGVYNHIDELSDLPGIGKGLVK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           NI E  + A LSR L  +  ++P+      L        RL +  K LEF  LI ++   
Sbjct: 236 NIEEDKDLAFLSRDLATIDLEIPVDYDPHKLQ-HGIEKNRLYNLFKNLEFKALIKKLNLK 294

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                          ++ ENK              + S F     +   +  E       
Sbjct: 295 EQEPEKEALEEHKKNSSKENK--------------QMSLFGGKVSEEIVVEREN------ 334

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
                              I      +  ++K ++   A+                 I++
Sbjct: 335 -----------------KIITTEDMFEDMLKKAKSEKIAAI----------LYGDCGISV 367

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           +               ++ LS     D  G    +   +  LKKF  +     I +  K 
Sbjct: 368 TLKSGN---------YYMPLSH----DYIGSENNS---IELLKKFL-SADIEFISYKFKD 410

Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
               +   G  ++    D+M+  ++L + ++   I  +           + K        
Sbjct: 411 ----ILNEGYEIKNIHFDVMIAYFLL-TAQTKESIEVVLHNETGDDFP-LYKDIFGKEDP 464

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            K+   +  E  ++ S  +  ++  L+ ++ +E +  ++  ++  +I ++S+ME  GI I
Sbjct: 465 SKLPVEEYGEFMMKRSESLYDIYKDLKNRIELEDMHDLFYNVEMKLILILSKMEQEGIAI 524

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D +  ++ S E+S  L  L++NI+ +S E+FNL+SPKQL +ILF KL     +KTKTG +
Sbjct: 525 DPEYFREFSLELSDKLQELKKNIFKISEEEFNLNSPKQLAEILFMKLNIEPVSKTKTG-F 583

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T    LE +      I + IL++R+L+K++STY D+LP   ++R  R+HT ++     T
Sbjct: 584 STNVDVLETLRDRGEKIAEYILDYRKLTKLQSTYVDALPKLADERN-RLHTTFNQTGAAT 642

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S  PNLQNIP+K+D G KIRR FIS     L++ DYSQIELR+LA ++K   L + 
Sbjct: 643 GRLSSSNPNLQNIPVKSDEGIKIRRGFISDKGNTLLAIDYSQIELRVLAELSKDETLIKA 702

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           + + LD+H + A +IF ++ + V+   R  AK +NFSIIYG +PF L+ +L I + +A +
Sbjct: 703 YSDGLDLHDLTAKKIFDIDTD-VTRSQRTMAKIVNFSIIYGKTPFGLSKELGISQKDAKE 761

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YIKRYF ++P + E  EK      + GYV+T FGR+   D I+S   +I+   +R A+N 
Sbjct: 762 YIKRYFEQYPRVKELEEKIIKNAEETGYVKTYFGRKRSVDGISSKNGNIKKQADRMAVNT 821

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQG+AADI ++ MI + K     K   KM LQ+HDEL+FEV +E +   + +I + ME 
Sbjct: 822 VIQGTAADILKKVMIEIDKK-IKDKNDIKMNLQVHDELIFEVKDESVEKYADLIKNIMEN 880

Query: 951 ACLPKINLRVPLKVNIKVSNNWQEE 975
           +   K    V L+ N+    NW E 
Sbjct: 881 SIKFK---NVKLEANVAQGKNWAEA 902


>gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836]
 gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836]
          Length = 901

 Score =  655 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/981 (25%), Positives = 425/981 (43%), Gaps = 99/981 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                + L+DG S  YRAFYA P+ +     G   NA+ GF +ML  +L++ +     +H
Sbjct: 11  TARPRILLLDGHSLAYRAFYALPVENFSTSTGQHTNAVYGFTSMLINMLRDEQ----PTH 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E Y +YKA R K P+    Q+ LV+   +A  IP  EI G+EADDI
Sbjct: 67  VCVAFDVSRKTFRSEQYTEYKAGRSKSPDEFKGQVSLVKEVLEALRIPTTEIDGWEADDI 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           IAT    A  +GF V I S D+D  QLVS    +    +      ++D   V +K     
Sbjct: 127 IATLATQASDQGFEVLISSGDRDAFQLVSDNVTVLYPKRGVSEIARMDPAAVEEK----- 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
                             G+    Y   A L+ E     + L     +  K   + + ++
Sbjct: 182 -----------------YGVTPRLYPDLAALVGEQ---SDNLPGVPGVGPKTAAKWLNQF 221

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                          DV   +        +     L   ++  +  +L+  +      D 
Sbjct: 222 G-----------SLDDVVDRVNEIKGKAGESLREHLADVIRNRQINELVRDLTLDVSVDD 270

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +P   D   T    +     +      +  Q     DQ  ++   Q           
Sbjct: 271 LVRQPWDRDKVHTLFDSLEFRV-LRERLVAEHEQVDETVDQGFELQGTQ----------- 318

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                          +   ++  W+++  + G                + + +A+     
Sbjct: 319 ---------------LKPGEVAAWLKEHVSAG----------------ERVGVAVQGSWG 347

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +         +          D T               +  +    K  H+ K   L  
Sbjct: 348 RGTGEITGLALATTAGAAAWFDPTALTADDAAAWQA---WLADPQQPKALHDAKGPLLGF 404

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G ++ G   D  L +Y+    + S+D+A +  ++L    +   ++    +  D +  
Sbjct: 405 LELGWTLAGLTSDTQLSAYLARPDQRSYDLADLTVRYLRRELRN-EEADNGQLSFDDVEG 463

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
               +  +  +  I  L   L  +L  +    +   ++ P+IDV++ ME  GI +D+  L
Sbjct: 464 GPAADATMLRARAIADLADTLDAELAKQAGTALLADVELPLIDVIAAMERDGIAVDRPYL 523

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +++    +  +     + Y++ G++ NL SPKQL  +LF +L+ P   +TKTG       
Sbjct: 524 EKLEERFATGVRDAATSAYEVIGKEINLGSPKQLQVVLFDELQMPKTKRTKTGYTTDADS 583

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   ++P +  +L  R  ++++ T  + L   I+ R  R+HT ++     TGRL+S
Sbjct: 584 LQALFEKTEHPFLAYLLAHRDATRLRQT-VEGLLKTISPRDARIHTTFNQTIAATGRLSS 642

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIPI+T+ G++IR AF+     + L+SADYSQIE+RI+AH+++   L   F + 
Sbjct: 643 TDPNLQNIPIRTEEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLIDAFNSG 702

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D H + AA +F V   +V+ +MR   K +N+ + YG+S + L+ QL+I   EA   +  
Sbjct: 703 EDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAYGLSAYGLSQQLKIGVDEAKGLMDE 762

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+        ++GY ETI GRR +  ++ S     R + ER A+NAPIQG
Sbjct: 763 YFERFGGVRDYLRSIVIEAGKSGYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQG 822

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + AM+ V  SL    L ++MLLQ+HDELVFE+   E     +++   M  A   
Sbjct: 823 SAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEIAPGEREALEELVRRDMGSA--- 879

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + + VPL V++ V   W E 
Sbjct: 880 -VEMAVPLDVSVGVGRTWHEA 899


>gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 824

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/834 (30%), Positives = 407/834 (48%), Gaps = 42/834 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+D    I++ FY    +S   DG P NA+ G    L  L      +  A +     D
Sbjct: 10  MYLLDAHGLIFQMFYGVGPMS-APDGRPTNAVFGVTRALMNLY-----DRGADYLIATLD 63

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +   TFR EI   YKA+R   P  LL Q P+++   +A  +P +   G+EADD++AT + 
Sbjct: 64  HEKPTFRVEIDAAYKAHRDPPPPDLLLQEPMIQQVMEAMRVPFLIAPGYEADDVMATVST 123

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDIEHVIKKWGIPPEKMVCLQAL 185
            A   G  V + ++DKD  QL++    + +  K+ E +D   V+  WG+ P+++V  QAL
Sbjct: 124 QAAARGLDVFLCTSDKDCRQLITDKVKMLNLRKDYEALDAAGVLADWGVRPDQVVDFQAL 183

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-KQKKRRENILEYAETARL-- 242
            GDS+D + G+ G+G KTAA  LQ++G L+ ++ NA +     K R+ + +   +  L  
Sbjct: 184 VGDSVDGVKGVAGVGPKTAAKWLQQFGTLDVLIANADQAAGGPKTRQALKDAVASGALAK 243

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA----- 297
           S++LV L  DVP+    E     D +G RL+       F     RV  T     A     
Sbjct: 244 SKRLVCLDRDVPVAFDWEGWRRRDWDGQRLLELFHEFGFRGFAERVRKTLTRSGAQKNAD 303

Query: 298 -------NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
                  N  P V D       G             +      L D   +      P + 
Sbjct: 304 ALATAGLNAPPPVADTVGRGVPGAKAVPAKKAKGKSQKPAGPGLFDLLMEEAPGAVPTET 363

Query: 351 FLERLQKLSQYP--INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
                   +      +   Y  I   +  +Q+V +L    +  F + T  +D  H   + 
Sbjct: 364 GASEPTAPAPISDGWSYSGYESITTPERFEQFVGELAQQPAFVFDLETAGLDPVHDPIVG 423

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            + S          K    ++ +     +     +T    +L+ LK  FEN    K  HN
Sbjct: 424 YSFSWQ--------KGTAYYLPVRAPAGEPVLNPDT----VLAALKPVFENPAIEKRNHN 471

Query: 469 IKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI---AQKWLSYTRKEILKSR 524
           IK+D +VL   G+ + G   D M+  Y+LD G  +H +  +     +  + + KE++ + 
Sbjct: 472 IKFDLIVLAASGVELAGVAGDSMVAHYLLDPGARAHGLDDLTLDELRHTNISIKELIGTG 531

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           K  I + ++  ++V+++A E+++  LQL     P+L    L  +Y+ L+ P+I V+++ME
Sbjct: 532 KKQITMAEVPVARVRDYACEDADAALQLAAAFEPRLDAAGLRELYDTLEVPLIRVLAEME 591

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI++D   L Q+  ++ + L   E +I+ L+G  FN+ S K+L  ILF +LK P   +
Sbjct: 592 HVGIRVDVPFLVQLGVQMGEELAGYEGDIHALAGRAFNIGSLKELQKILFDELKLPVQKR 651

Query: 645 TK-TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           T    +  T  + LE++    + + K +L +R++SK+KSTY D LP   + +  RVHT +
Sbjct: 652 TGIKNEPSTDQESLERLAALGHELPKKLLAYRKVSKLKSTYVDVLPALAD-KNGRVHTSF 710

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           + AS  TGRL+S EPNLQN+P +T+ G ++R+AFI      L++ADYSQIELR+L H   
Sbjct: 711 NQASAETGRLSSSEPNLQNVPTRTEQGAQLRKAFIPRDGWVLVTADYSQIELRLLTHFCG 770

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
              L   F    D+H  VAA+IF V   +V+   R  AKT+NF ++YG+S   L
Sbjct: 771 DDTLRAAFAEDRDVHTAVAAQIFKVPEGEVTKAQRGVAKTVNFGVLYGMSATGL 824


>gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
          Length = 889

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/973 (27%), Positives = 439/973 (45%), Gaps = 104/973 (10%)

Query: 15  FIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFR 73
             +RAFYA P  S     G   NA+ GF +ML +LL+  +     +H AV FD    +FR
Sbjct: 1   MAFRAFYALPPDSFVTATGQHTNAVYGFVSMLTRLLETEQ----PTHVAVAFDVSRHSFR 56

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
            E YP+YK  R   PE    Q+ L+R    A GI ++  +GFEADDI+AT  Y A  +G 
Sbjct: 57  TEEYPEYKGTRDATPEEFKGQVELIREVLDAMGIVSLSREGFEADDILATLAYRAGNDGA 116

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
            V ++S D+D  Q V+    +           ++  + V +K+G+PP +   + A+ G++
Sbjct: 117 TVLVVSGDRDSFQTVTDNVTVLYPGTGPGDLRRMTPQAVEEKYGVPPHRYPEIAAIVGET 176

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DN+PG+PG+G KTAA  + +Y  L+N+L  A  I  K+                     
Sbjct: 177 SDNLPGVPGVGPKTAAQWINKYDGLDNLLARADEIGGKR--------------------- 215

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
                              G  L   +  +   + +NR+ T  D + +  +      +  
Sbjct: 216 -------------------GAALREHMDDVVRNRRLNRLLTDMDLEVSPSDLARRPTDVA 256

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
                        D    + +F  L  +  ++      +    E  + +++  I+     
Sbjct: 257 A-----------IDRLFDSLEFGRLRQKVREVAGIGMGEGHADEAPEAVTEVEISVALAD 305

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
              +               + +  +  D +         + +++ ++             
Sbjct: 306 ASCDIAQW------ARAHSTLAVLVEGD-LRPTRGDVTRLVLASDNEA------------ 346

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-ED 488
            L +   + S  +     E+L+             I H+ K  +  L   G ++ G   D
Sbjct: 347 -LVIDPVELSPQQEEALGEVLAT--------ALSLIVHDAKGARHALSSRGWTLGGVEFD 397

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS--DSQVQEHAIENS 546
            ML +Y+    + SH +  +  + L    +E     ++   +  +    S  Q  A + +
Sbjct: 398 TMLAAYLAHPDQRSHKLEDVLSRVLGVVIEEEEGDSEALFDLGDMGAGPSAAQVRAGKLA 457

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
             +  L   LR +L       +   ++ P+  ++ QME  GI  D  +L  +S E+ K +
Sbjct: 458 AHLHPLASTLRSRLEESSEAALLTDMEMPLSVLLGQMEDIGIAADTSVLDGLSDELGKAV 517

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC---- 662
            +  E  +  +G + NLSSPKQL ++LF     P   KTKTG         +        
Sbjct: 518 DAAREGAWAAAGREVNLSSPKQLQELLFDHFGLPKTKKTKTGYTTNAEALADLHAKTSDE 577

Query: 663 --GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +  +  +L  R   K+K    DSL   +     R+HT +S  +  TGRLAS +PNL
Sbjct: 578 GGAGHDFLGFLLTHRDRIKLK-QMVDSLSATVASDG-RIHTTFSQVAAATGRLASSDPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIP ++  G +IR AF++    + L+SADYSQIE+R++AH++    L + F +  D+HR
Sbjct: 636 QNIPARSADGMRIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHR 695

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            +A+ +FG  + +VS + R   K  ++ + YG+S + LA QL IP  EAA    RYF RF
Sbjct: 696 TMASMVFGTPVAEVSAEERSRIKATSYGLAYGLSSYGLAAQLGIPVPEAAALRDRYFERF 755

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             + +Y+E      R +GY +T+FGRR +  ++ S     R + ERAA+NAPIQGSAADI
Sbjct: 756 GKVRDYLEGLVAQARADGYTQTMFGRRRYLPDLRSSNRQRREMAERAALNAPIQGSAADI 815

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AMI+V  +L +  L +++L+QIHDEL+ EV   E      I+   M       + L 
Sbjct: 816 VKIAMINVVDALSEAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDKM----ATPVELS 871

Query: 960 VPLKVNIKVSNNW 972
           VPL V + V  +W
Sbjct: 872 VPLDVAVGVGRSW 884


>gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
 gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
          Length = 886

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/988 (30%), Positives = 474/988 (47%), Gaps = 119/988 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S ++RAF+A            GL   AI GF  ML  +L+  + ++ 
Sbjct: 1   MAKQ--LLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDA- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR E Y DYK +R K P  L+ QLP VR   +A G+ A E+  +EA
Sbjct: 58  ---ALVAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     ++ GF   I++ D+DL QL +  T +  T +     E+    ++ +K G
Sbjct: 115 DDIIGTLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                                 +    Y     L+   G+  +     ++I +K     I
Sbjct: 175 ----------------------VTPRQYIDVKALM---GDSSDNYPGVTKIGEKTAVSLI 209

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            EY                                   L    + +   K   R     +
Sbjct: 210 QEYG---------------------------------SLDGLYENIAAMKKSKRKENLIN 236

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            +    E   L     +    A      +D   +    ++L D   +++ +   ++L  +
Sbjct: 237 EEKIARECQDLATIRRD----APLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQ 292

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             +  +Q       Y  +   +D    V +L    +  F++     +   S      I  
Sbjct: 293 --EGGAQVDQAPIEYQVL--DEDNMALVDQLGA--TVCFQLEMPDANYHESPLAGFVI-- 344

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
               D   + V      L+                  + LKK  E+    +   N K   
Sbjct: 345 ---GDGKRWLVSRNADLLTT-----------------APLKKLLEDPAVERDVFNAKAQL 384

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSI 528
           + LHR G+ + G + D++L SY+L++  +++D+  +A     +      +   K  K +I
Sbjct: 385 VGLHRLGVDLAGVDFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAI 444

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P D   D     H  + +  I  L   L  +L   + L +YE +++P+  V++ MEITGI
Sbjct: 445 PAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGI 501

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            +D   LK++ +++ +    LE+ IY  +GE+FN++SPKQLG ILF K+K P   KTKTG
Sbjct: 502 HVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPKQLGVILFEKMKLPVIKKTKTG 561

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +TA D+ +      PI+++IL +RQ+SK++STY   L   I++  Q++HT Y    T
Sbjct: 562 Y--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLT 619

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S++PNLQNIP++ + G++IRRAF    P  K+ S+DYSQ+ELR+LAH+     +
Sbjct: 620 ATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIFSSDYSQVELRVLAHVTGDKNM 679

Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
              F    DIH   A  IF + + ++V+P MRR AK +NF I+YGIS + LA  + + R 
Sbjct: 680 QADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNIHVSRP 739

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++I+ YF  FPG+ +Y+       +Q GYVET+  RR +  EI++   + R+  ER 
Sbjct: 740 QAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHRRRYLPEIHAKSFTQRSFAERM 799

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI + K+L++  L  +MLLQIHDELVFE PEEEI    +++  
Sbjct: 800 AMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIAILEELVPS 859

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            M+ A    + L VPLKV  K    W +
Sbjct: 860 IMDSA----VKLDVPLKVESKSGATWYD 883


>gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
 gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
          Length = 904

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/981 (28%), Positives = 445/981 (45%), Gaps = 92/981 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             ++ L L+DG S  +RAFYA P  + R  +GL  NA+ GF +ML  LL++       +H
Sbjct: 3   SPKHKLLLLDGHSLAFRAFYALPEENFRTAEGLTTNAVYGFVSMLINLLRDE----DPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+++YP+YKA R K PE    Q+ L++    A GI     +G+EADDI
Sbjct: 59  VAVAFDISRKTFRSQMYPEYKATRSKSPESFPGQVDLIKEVLGALGIVWEAHEGYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           IATY    +++G+ V I++ D+D +QLV+P   +    +      +   E V +K+G+ P
Sbjct: 119 IATYATQGQQQGYQVLIMTGDRDALQLVTPDITVLYPNRGVSDLIRYTPEQVEEKYGLSP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL                          G+  + L     + +K     +  Y
Sbjct: 179 AQYPDFAALR-------------------------GDPSDNLPKIPGVGEKTASSWVKSY 213

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A L     + R D           +    G  L   L  +   + +  +    + D 
Sbjct: 214 HSLAEL-----LERAD----------EVTGKTGQALRDHLDQVRRNRQLTELVRDMEVDH 258

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           A     V D+   +     +    DR       +F  L D+         P+      + 
Sbjct: 259 A-----VADLTRQQWDRDQVHALFDR------LEFRVLRDRLFATLGAVEPEAEESVEVA 307

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                        +++    +  W+ +    G            A H   +         
Sbjct: 308 G------------ELLAPGAVGAWLAEHARDGERCGV-------AVHGAQVPSGGGGTPL 348

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           KD     +  I           +    T+T E +  L  +  +    K  H  K+    L
Sbjct: 349 KDGGGAWLVAI---AGADGHGAAIRTETMTPEDVRALDGWLADPAVPKAFHEAKWATHAL 405

Query: 477 HRYGI-SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR-KEILKSRKSSIPIDKI 533
              G   + G   D  L +Y+   G+ S ++  +A ++L      E    ++ S+  D  
Sbjct: 406 RGGGFAEIAGVTTDTGLAAYIARPGQRSFNLPDLALRYLRRQLGPEDGGEKQLSLLDDST 465

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            + +  + +I  +  I +L   L   L       +   ++ P+  V+++ME  GI +DQD
Sbjct: 466 GEDKEADDSITEAAAIRELGGALDDVLDKAGSADLLRTMELPLTFVLARMEEAGIAVDQD 525

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L  + A+ +  +    E+ Y + G++ NL SPKQL  +LF +L  P   KTKTG     
Sbjct: 526 GLAGLHADFAARVKQAAESAYSVIGKEINLGSPKQLQVVLFDELGMPKTKKTKTGHTTDA 585

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                     ++P +  +LE R  +++ +T A  L   I     R+HT +      TGRL
Sbjct: 586 DALQWLFEKTEHPFLLYLLEHRDATRLMTT-AQGLIKAIGPDG-RIHTTFRQDVAATGRL 643

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++TD  ++IR  F+     + L++ADYSQIE+RI+AH++    L + F 
Sbjct: 644 SSTDPNLQNIPVRTDEARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDDGLIEAFR 703

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  VA+  FGV I++V  ++RR  K +++ + YG+S F LA+QL +   EA   +
Sbjct: 704 TGEDLHNFVASRAFGVPIDEVGAELRRRVKAMSYGLAYGLSAFGLASQLGVSGEEAKAQM 763

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF RF G+ +Y+       R+ GY ET+FGRR +  ++ S     R + ERAA+NAPI
Sbjct: 764 DAYFARFGGVRDYLHAVVEEARRKGYTETLFGRRRYLPDLTSDNQQQRAVAERAALNAPI 823

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI V ++L + ++ ++MLLQ+HDELV EV + E    + ++   M  A 
Sbjct: 824 QGSAADIIKVAMIHVAEALAEREMRSRMLLQVHDELVLEVADGEREELAALVSEQMGSA- 882

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
              I L VP+ V++    NW 
Sbjct: 883 ---IELLVPMDVSVGFGANWD 900


>gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
 gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
          Length = 895

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/945 (27%), Positives = 451/945 (47%), Gaps = 71/945 (7%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML +++     +    H AV FD    TFRN++ P YK  R   PE LL QLPL++    
Sbjct: 1   MLSQVIDAEHPD----HLAVAFDVKGGTFRNQMLPQYKGTRDAAPEELLSQLPLIQQMLT 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--- 160
           A G+  IE  G+E DD+I T   + ++ G+   ++S D+D  QL++    +         
Sbjct: 57  ALGVTYIEKPGYEGDDVIGTLASMGDQAGYRTLVLSGDRDAFQLINDNITVLYPGHHFKD 116

Query: 161 -EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            + +  + V +K+ + P +   L AL G++ DNIPG+PG+G   AA  + +YG LE I+ 
Sbjct: 117 LKHMTPDAVQEKYHVSPAQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEQIIE 176

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
           +A  I  KK  E + E  E  +L+R +  L  D+ + + +  L     +  +L      L
Sbjct: 177 HADEISGKK-GEALRENIEQVKLNRSVNALVRDLDLGVSVSDLTFGQVDAGQLDDLFTKL 235

Query: 280 EF-TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
           EF  +  NRV  T++ D  +      D++ +   G+    +++    ++T   +      
Sbjct: 236 EFGVRTKNRVLKTFNADKPSG-----DVHESSKLGLPHVEDVNDPHVVETWVQNHF---- 286

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
                    Q+   ER ++ S                                    T  
Sbjct: 287 ------PVVQEHLHERHERSSNDIPEFG-----------------------FEIDSSTRC 317

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
            D           S     + TS   E     L +    ++   +  + +++  L++ F+
Sbjct: 318 TDKVKQ-------SWTLYAEGTSKPGEASLSALMIAVHGEAIRIDVFSPDMVQCLQRLFD 370

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YT 516
             H   + H  K    +L   G+ +     D  L  Y+      +  +   A  +L  + 
Sbjct: 371 RYHHSMVVHGYKEHAHLLGSIGVELPEPLFDTKLAGYLAHPDFHADTLEQAAAHFLDLHI 430

Query: 517 RKEILKSRKSSIPIDKIS--DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
             +   + + ++  D+    DS+  E  +  + ++  L   L   L   +   + + ++ 
Sbjct: 431 EAQAEAATQGTLDFDEPEENDSKNGELILTRTAIVGLLAEYLAGVLDKREQFGLLKSIEL 490

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+  V+  ME  G Q+D   L Q+  +++ +    +E  +  +GE+ NL SPKQL  ILF
Sbjct: 491 PVSQVLHGMEQVGAQVDMTRLVQMRDQLAADAAQAQETAWQFAGEQVNLQSPKQLQKILF 550

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSL 688
             +      KTK+G + T A  L+ +             +  +L  R+ +K+K     +L
Sbjct: 551 EDMGLKPTKKTKSGSYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLK-QIVQTL 609

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLIS 747
            +  N+   R+HT +      TGRL+S++PNLQNIP +   G++IR AF+     + L+S
Sbjct: 610 IDATNRHDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLS 669

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           +DYSQ+ELRI+A ++    L + F +  D H+ VA+ ++G+ ++ ++   R H K +++ 
Sbjct: 670 SDYSQVELRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITSDQRSHVKAMSYG 729

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           + YG+S + LA QL+I   EA     +YF  F  +HEY+E   +  R+ GY ETIFGRR 
Sbjct: 730 LAYGLSTYGLAQQLKIKPKEAESLKNQYFATFGKVHEYLESLVSSAREKGYTETIFGRRR 789

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           ++  + SP  ++R+  ERAA+NAPIQGSAADI + AMI  + +L++  L ++++LQIHDE
Sbjct: 790 YFPGLKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRAYDALQEANLGSRLILQIHDE 849

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LV E+   E   A+ ++  +ME A    + + VPL V+  + ++W
Sbjct: 850 LVVEIAPGEEKQATALVKDAMEHA----VTMAVPLDVSTGIGSDW 890


>gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
 gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
          Length = 888

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/984 (27%), Positives = 451/984 (45%), Gaps = 111/984 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            + + L LVDG S  YRAF+A P  + +   G   NA+ GF +ML  LL++ +     +H
Sbjct: 4   SEASRLLLVDGHSMAYRAFFALPAENFQTATGQTTNAVYGFTSMLINLLRDEK----PTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR E YP+YKA R + P+    Q+ L++    A  IP +  + FEADD+
Sbjct: 60  IAVAFDVSRRTFRTEAYPEYKAGRSETPDEFRSQVSLIQDVLTALAIPFLSKENFEADDL 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           IAT    A   G  V I + D+D +QLV+    +   VK      +   E V++K G+PP
Sbjct: 120 IATLATQATALGQKVLICTGDRDALQLVNDDITVLYPVKGVSELARYTPELVLEKQGVPP 179

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
                  A+ GDS DN                         L N   +  K   + + ++
Sbjct: 180 SLYADYAAIRGDSSDN-------------------------LPNTPGVGPKTIVKLLGQF 214

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +   LS  LV     V                 ++   L+A     L+NR  T    D 
Sbjct: 215 GD---LS-GLVEGVDQV---------------KGKVGESLRANLANILLNRQLTELVRDV 255

Query: 297 A-NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
              + P  L     +   +    +      ++   F++LS  +++  +E+  +    E  
Sbjct: 256 ELPLGPEDLAAKAWDRDAVHRLFDQLEFRVLRDRLFATLS--SAEPEAEEGFEVSGGELA 313

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +                    +  W Q             +D       +   +A +   
Sbjct: 314 EGG------------------LAAWFQAHAGARVGVASRESDG------EVEGLAFAVGG 349

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +                            LT +  + L  +  ++   K  H+ K     
Sbjct: 350 EGGYVRLAA--------------------LTPDDETALADWLASDA-PKAVHDAKPLLHR 388

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEILKSRKSSIPIDK 532
           L   G+ + G   D  L +Y++  G+ S  +  +  + L      +E    + S +  ++
Sbjct: 389 LRARGLRLGGLTSDTALAAYLVRPGQRSFSLDDLVLRHLQRELRAEEPGGGQLSLLDEEE 448

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
               +    AI  ++ + +L  +L  +L       +   L+ P++ +++++E  GI +D 
Sbjct: 449 DESGKAATAAIVRASAVAELADVLDTELHRTGQEGLLADLELPLLALLAEIEGIGIAVDD 508

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L  + A  +  +    ++ Y + G++ NL SPKQL  +LF +L  P   KTKTG    
Sbjct: 509 EHLTGLEAHFAAGVKQAAQDAYAVIGKEINLGSPKQLQVVLFDELGMPKTKKTKTGYTTD 568

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                       +P ++++L  R ++++K+T  D L   +     R+HT +      TGR
Sbjct: 569 ADALQSLFESTQHPFLQHLLAHRDVTRLKTT-VDGLLKAV-ADDGRIHTTFHQTIAATGR 626

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           L+S +PNLQNIPI+TD G++IR  F+  P   +L++ADYSQIE+RI+AH++    L + F
Sbjct: 627 LSSTDPNLQNIPIRTDEGRRIREGFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAF 686

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  D+H  VA++ F V   +V+ + RR  K +++ + YG+S + LA QLRIP +EA + 
Sbjct: 687 RSGEDLHTFVASKAFSVPTGEVTAEQRRRVKAMSYGLAYGLSEYGLAQQLRIPAAEAREQ 746

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           ++ YF RF G+ +Y++      R+ GY ETI GRR +  ++NS     R + ER A+NAP
Sbjct: 747 MEAYFSRFGGVRDYLQSIVEEARKKGYTETILGRRRYLPDLNSDNRQRREMAERMALNAP 806

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM+ V ++LE  +L ++MLLQ+HDELV E+ + E      ++   M  A
Sbjct: 807 IQGSAADIIKVAMLGVFQALEASELTSRMLLQVHDELVLEIADGERAAVESLVREHMGNA 866

Query: 952 CLPKINLRVPLKVNIKVSNNWQEE 975
                 L VPL+V++ V  +W E 
Sbjct: 867 ----FQLSVPLEVSVGVGRSWDEA 886


>gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 897

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/980 (26%), Positives = 435/980 (44%), Gaps = 101/980 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++ +     +H
Sbjct: 7   ADRPRLMLMDGHSLAYRAFFALPAENFTTVTGQPTNAIYGFASMLANTLRDEQ----PTH 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           FAV FD    T+R+E + +YKANR K P+    Q+ L+     A   P   + GFEADD+
Sbjct: 63  FAVAFDVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAPRFAVDGFEADDV 122

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE  GF V I++ D+D  QL+S  T +    K      +   E V +K+G+ P
Sbjct: 123 IATLATQAEAAGFEVLIVTGDRDSFQLISDHTTVLYPTKGVSELTRFTPEKVFEKYGLTP 182

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +                      Y   A L    G+  + L     + +K   + I ++
Sbjct: 183 AQ----------------------YPDFAAL---RGDPSDNLPGIPGVGEKTAAKWINQF 217

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A    +LV                 E+  G    +F   LE  KL  R+        
Sbjct: 218 GSFA----ELVE--------------RAEEVKGKAGQNFRDHLEAVKLNRRLTEMIRDVE 259

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +     L+    + K + +  +          +     D  +      T   + ++   
Sbjct: 260 LDRTVTDLERAPYDRKALTLVLDTLEIRNPSLRERLLAVDPGAAEEETATEPAVEIDGA- 318

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++   +++ W+ +          + T  +            S  + 
Sbjct: 319 --------------VLGAGELEPWLGEHGGSLLGMATVDTWKLGEG---------SVTEV 355

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                      F    +  + +                ++       KI HN K    V 
Sbjct: 356 ALAAPGGAAAWFDPARLDEADE------------KAFAQWLAAADRPKILHNAKGVMRVF 403

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             +G  + G   D  L +Y++  GR S  + +++ ++L           + ++     +D
Sbjct: 404 AEHGWRVEGVTMDTALAAYLVKPGRRSFALDALSLEYLGRELAPATADGQLTLG----AD 459

Query: 536 SQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + + HA+   +  +L L      +L       +   ++ P   +++ +E  GI  D+D 
Sbjct: 460 DEAEAHALMVQARTVLDLGAAFGERLEQVGATGLLADVELPTSILLASLERAGIAADRDH 519

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  + +  +    +  +D  G +FNL SPKQL ++LF +L  P   KTKTG      
Sbjct: 520 LEAMERQFAAAVQQAVKEAHDAVGREFNLGSPKQLQEVLFGELNLPKTKKTKTGYTTDAD 579

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                    D+ +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+
Sbjct: 580 ALAWLAAQTDHELPVIMLRHREQAKLRVT-VEGLIKSI-ATDGRIHTTFNQTVAATGRLS 637

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +
Sbjct: 638 STEPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTS 697

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  VA+++FGV  + V  +MRR  K +++ + YG+S F L+ QL I   EA   + 
Sbjct: 698 GEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMD 757

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +Y+    +  R  GY ET+ GRR +  ++NS     R   ER A+NAPIQ
Sbjct: 758 TYFERFGGVRDYLRHAVDEARATGYTETMLGRRRYLPDLNSDNRQRRETAERMALNAPIQ 817

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM+ VH++L + +L+++MLLQ+HDE+V E+   E     +I+   M  A  
Sbjct: 818 GTAADIVKIAMLRVHRALTEARLSSRMLLQVHDEIVLEIAPGERERVEEIVRREMADA-- 875

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             + LR PL V++ V  NW+
Sbjct: 876 --VQLRAPLDVSVGVGQNWE 893


>gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 908

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/980 (26%), Positives = 435/980 (44%), Gaps = 101/980 (10%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
                L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++ +     +H
Sbjct: 18  ADRPRLMLMDGHSLAYRAFFALPAENFTTVTGQPTNAIYGFASMLANTLRDEQ----PTH 73

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           FAV FD    T+R+E + +YKANR K P+    Q+ L+     A   P   + GFEADD+
Sbjct: 74  FAVAFDVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAPRFAVDGFEADDV 133

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE  GF V I++ D+D  QL+S  T +    K      +   E V +K+G+ P
Sbjct: 134 IATLATQAEAAGFEVLIVTGDRDSFQLISDHTTVLYPTKGVSELTRFTPEKVFEKYGLTP 193

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +                      Y   A L    G+  + L     + +K   + I ++
Sbjct: 194 AQ----------------------YPDFAAL---RGDPSDNLPGIPGVGEKTAAKWINQF 228

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
              A    +LV                 E+  G    +F   LE  KL  R+        
Sbjct: 229 GSFA----ELVE--------------RAEEVKGKAGQNFRDHLEAVKLNRRLTEMIRDVE 270

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +     L+    + K + +  +          +     D  +      T   + ++   
Sbjct: 271 LDRTVTDLERAPYDRKALTLVLDTLEIRNPSLRERLLAVDPGAAEEETATEPAVEIDGA- 329

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         ++   +++ W+ +          + T  +            S  + 
Sbjct: 330 --------------VLGAGELEPWLGEHGGSLLGMATVDTWKLGEG---------SVTEV 366

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                      F    +  + +                ++       KI HN K    V 
Sbjct: 367 ALAAPGGAAAWFDPARLDEADE------------KAFAQWLAAADRPKILHNAKGVMRVF 414

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             +G  + G   D  L +Y++  GR S  + +++ ++L           + ++     +D
Sbjct: 415 AEHGWRVEGVTMDTALAAYLVKPGRRSFALDALSLEYLGRELAPATADGQLTLG----AD 470

Query: 536 SQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + + HA+   +  +L L      +L       +   ++ P   +++ +E  GI  D+D 
Sbjct: 471 DEAEAHALMVQARTVLDLGAAFGERLEQVGATGLLADVELPTSILLASLERAGIAADRDH 530

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+ +  + +  +    +  +D  G +FNL SPKQL ++LF +L  P   KTKTG      
Sbjct: 531 LEAMERQFAAAVQQAVKEAHDAVGREFNLGSPKQLQEVLFGELNLPKTKKTKTGYTTDAD 590

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                    D+ +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+
Sbjct: 591 ALAWLAAQTDHELPVIMLRHREQAKLRVT-VEGLIKSI-ATDGRIHTTFNQTVAATGRLS 648

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFEN 773
           S EPNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +
Sbjct: 649 STEPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTS 708

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+H  VA+++FGV  + V  +MRR  K +++ + YG+S F L+ QL I   EA   + 
Sbjct: 709 GEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMD 768

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            YF RF G+ +Y+    +  R  GY ET+ GRR +  ++NS     R   ER A+NAPIQ
Sbjct: 769 TYFERFGGVRDYLRHAVDEARATGYTETMLGRRRYLPDLNSDNRQRRETAERMALNAPIQ 828

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+AADI + AM+ VH++L + +L+++MLLQ+HDE+V E+   E     +I+   M  A  
Sbjct: 829 GTAADIVKIAMLRVHRALTEARLSSRMLLQVHDEIVLEIAPGERERVEEIVRREMADA-- 886

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
             + LR PL V++ V  NW+
Sbjct: 887 --VQLRAPLDVSVGVGQNWE 904


>gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 862

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/973 (29%), Positives = 474/973 (48%), Gaps = 115/973 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DG S + RAFYA P L+   +GL  NAI GF NML+K+ ++ + + I +     
Sbjct: 2   GKLVILDGHSLMNRAFYAIPPLTTA-EGLHTNAIFGFINMLFKIREDIKPDYIVT----T 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+E Y DYKA R ++P+ L  Q   ++       I   EI GFEADD+I T 
Sbjct: 57  FDRKAPTFRHEEYQDYKAGRKRMPDELHEQFEPLKDILSKMAINIFEIDGFEADDLIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AE EG  V I++ D+D +QL S    +  T K             G+   ++     
Sbjct: 117 AVKAESEGIEVYIVTGDRDALQLASDNIKVLLTKK-------------GVSEREVYDRNR 163

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           +  D      G+    +     L+   G+  + +     I +K   + I EY        
Sbjct: 164 MIED-----YGVTPTQFIDVKGLM---GDASDNIPGVPGIGEKTAYKLIKEYGS------ 209

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                     I   L++L        +L   +K    +   + + +          P+ +
Sbjct: 210 ----------IEGVLDNL-------DKLKGKIKENLESHCEDAIFSKKLATIITNVPIDI 252

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D++  +++  A + +  R+   K  QF SL ++  +   E   QK  +E + +     ++
Sbjct: 253 DLDDIKSQE-AYDVKALRELFFK-YQFKSLINKLPE--EENQGQKPAVEVVIEKISTLVD 308

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            +  T+ V+T+     V ++      S                               + 
Sbjct: 309 FEKLTENVDTELF--IVHEISGKEKFSL---------------------------MKLEK 339

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             I    S         +    K    YLKK FEN    KI HN K    VL +  I + 
Sbjct: 340 LYIHNSKSYEIEVQKLFEENEEKS-KEYLKKLFEN-TSEKIIHNAKNLFTVLSKLDIDIN 397

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            F  D  + +Y+++S    + + ++ + +L  T ++I +   +   +             
Sbjct: 398 NFVFDTEIAAYLIESSDKEYTLKTLFETYLHETYQDISQEISNLSNL------------- 444

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
                    +  L+ K+   ++  +  +++ P++ V++ ME  G ++D++ L Q+  +  
Sbjct: 445 ---------YQRLKEKIKELQMEDLLYKIELPLVKVLADMEKVGFKVDREQLDQLREKFI 495

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             +   ++ IY+++GE+FN+SSPKQLG ILF KL  P   KTKTG + T A+ LE++   
Sbjct: 496 NEITVSQKEIYEMAGEEFNISSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEKLK-D 553

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +PII  I  +RQL+K+ STY + L + I+ +  R+H+ ++   T TGRL+S EPNLQNI
Sbjct: 554 KHPIIDKITYYRQLTKLNSTYVEGLIHVID-QDGRIHSSFNQTVTTTGRLSSTEPNLQNI 612

Query: 724 PIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           PIK ++G+ IR+ F+       ++SADYSQIELR+LAH+A    +   +   +DIH   A
Sbjct: 613 PIKYEMGRAIRKVFVPNDEESLILSADYSQIELRVLAHMADDENMKTAYLEHIDIHTKTA 672

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+F + +++V+ + R  AK +NF I+YGIS F L+  L+I + EA  YI  YF R+P +
Sbjct: 673 SEVFNLPLDQVTKEKRSAAKAVNFGIVYGISDFALSEDLKISKKEAKQYIDTYFSRYPKV 732

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            EYI  T     +  YV TIF RR    EI S    ++ + +R A+NAPIQGSAADI + 
Sbjct: 733 KEYISSTIAKAEKELYVNTIFNRRRFIPEITSSNKIVKALGDRLAMNAPIQGSAADIIKL 792

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM++V K L++ KL + ++LQ+HDE++  V ++E+ T  +++   ME      I+  VPL
Sbjct: 793 AMVNVSKRLKEEKLKSSLILQVHDEIILNVYKDELETVKELVKKEMESV----IDFSVPL 848

Query: 963 KVNIKVSNNWQEE 975
           +V+I     W + 
Sbjct: 849 EVDINTGTTWYDA 861


>gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
 gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
          Length = 871

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/975 (30%), Positives = 484/975 (49%), Gaps = 110/975 (11%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D +S + RAFYA P L+   DG+  NAI GF NML+K+      ++        
Sbjct: 2   KRLLILDSNSLMNRAFYALPPLTND-DGVNTNAIYGFTNMLFKMKDEINPDN----IIAT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  + TFR++ Y +YKA R K+P  L  Q P+++   +  GI   EI GFEADDII T 
Sbjct: 57  FDKKSPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           +   E+    V I++ DKD +QL S  T +  T K             G+    +   +A
Sbjct: 117 SKFGEENDMEVYIVTGDKDALQLASEKTKVVITKK-------------GVTETAIYDYKA 163

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
              +          I       +    G+  + +     + +K   + I EY        
Sbjct: 164 FMDEFE--------ITPTQFIDVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYG------- 208

Query: 245 KLVMLRTDVPITIPLEHL--ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                         LE +   + + +G +L   L+      + ++   T   +     P+
Sbjct: 209 -------------TLEDVLKHIPEISGKKLKENLENNMEQAIFSKKLATIMREV----PL 251

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            ++++  EN       E++     K S+   L    SK + +    +L            
Sbjct: 252 DINLSDIEN-----ADEVNLVELKKLSKNLKLKSVLSKYDLDNNEAEL----------QE 296

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           I N   +KI   +++++ +  ++      F       DA     I +    L ++  +  
Sbjct: 297 IANIEISKIETIEEMEEVLLSIKDRSYILF----TLNDASKYSTIELEYLILGEEGRS-- 350

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                      H         +  ++ L+ L+ F E++   K+ H+ K     L++Y I 
Sbjct: 351 -----------HVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKYDID 399

Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           ++GF+ D  + +Y++DS ++++++  +  ++L    K      K                
Sbjct: 400 IQGFDFDTAIAAYLIDSSKANYEVFDLINRFLEKDIKSDCDDLK---------------- 443

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               S+ + +L+  L+ +L  E +  +Y +++ P+I V+S ME  G +I++D L+++  +
Sbjct: 444 -AICSSYLTKLYEKLKERLHKEDMDELYYKVEHPLIYVLSSMESIGFKINKDKLEELRIK 502

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
             + +   E+ IY+L+ E+FN+SSPKQLG ILF KL  P   KTKTG   +T Q++ +  
Sbjct: 503 FKEQIEKTEKEIYELADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGY--STNQEVLEKL 560

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              +PII  ++ +RQ++KI STY + L N I+     +H+ ++   T TGRL+S EPNLQ
Sbjct: 561 IDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGC-IHSNFNQTVTTTGRLSSTEPNLQ 619

Query: 722 NIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPIK ++G++IR+ FI       LIS DYSQIELR+LAH+A    +   FE+  DIH  
Sbjct: 620 NIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTK 679

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+E+F V +++V+  MR +AK +NF I+YGIS F LA  L+I + EAA+Y+  YF R+P
Sbjct: 680 TASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSLAQDLKITKKEAAEYMAIYFERYP 739

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I EY+     + ++ GYV TI  RR    EI S    ++ + ER A+NAPIQGSAADI 
Sbjct: 740 KIKEYLNYVSEYAKEKGYVLTILNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSAADII 799

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM++V+  L +  L ++++LQ+HDEL+  V ++E     Q+++  MEKA    I L V
Sbjct: 800 KLAMVNVYNKLREKNLNSELILQVHDELILNVKKDEFDIVKQLVIEEMEKA----IKLNV 855

Query: 961 PLKVNIKVSNNWQEE 975
            L V++K    W + 
Sbjct: 856 ALDVDLKYGYTWYDA 870


>gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7]
 gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7]
          Length = 856

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/971 (28%), Positives = 472/971 (48%), Gaps = 123/971 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L  +DG+S + RAFY   +L+    G+  NAI GF N+  K +     +      AV F
Sbjct: 2   KLLCIDGNSIMNRAFYGIRILTNSK-GICTNAITGFMNIYMKEIGEVHPD----CVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++    YKANR  +P+ L  Q+PL++      GI  +E +G+EADDI+ T +
Sbjct: 57  DLKAPTFRHKANSSYKANRKGMPDELAQQMPLIKKLLGLLGIKTVECEGYEADDILGTLS 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             A   G    I++ D+D  QLVS    +    T + +    E +++++G+ P +M+ ++
Sbjct: 117 KAAADSGNECYILTGDRDSFQLVSENVTVRLAGTKETKIYTPERIMEEYGVTPRQMIEVK 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNI G+ GIG KTA  L+Q+ G +EN+                          
Sbjct: 177 ALMGDTSDNISGVKGIGEKTALSLIQQAGTVENLYS------------------------ 212

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                          L+   + + N  +L +  +    +  +  +      +       +
Sbjct: 213 --------------DLDKFTITNGNRAKLEAGHQDAIDSHFLAEICLEAPVEKDTAAYKL 258

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
              +  E K    E E+ R   +      + +D  S    E+T  KL             
Sbjct: 259 TAPDAAEAKAFLTELEMLR---LMERLKLTGADSKSADAGEETKIKLK------------ 303

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +   Y   +   D    + ++     ++F    + +  F    +  +I+  D        
Sbjct: 304 DLPKYETGLPLNDDA--IAQMTEGKKSAFIFDGNKLQVFFEDKV-YSIAFGDW------- 353

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               F  +++                     ++FE+    K     K         G  +
Sbjct: 354 ---DFDGIAL---------------------RYFES-GCEKTAFEGKKAHRFAFDNGTRL 388

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
            G      L  Y+L+S    +   ++   +    R ++                      
Sbjct: 389 NGLTFCCDLAGYLLNSQAGEYTAENLCLTYKVTYRSDMGDFA------------------ 430

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
             +   +L L   L+ +L   ++L ++  ++ P+ +V++ ME  G++ D + +++    +
Sbjct: 431 --DVCSLLPLAENLKLQLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTNGIREFGKWL 488

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
            K++ +L + IYDL+G +FN++SPKQLG++L+ KL  P+  KTK+G + T A+ LE++  
Sbjct: 489 KKDIEALTKQIYDLAGGEFNIASPKQLGEVLYEKLGLPAKKKTKSG-YSTNAEVLEEL-A 546

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
             +PI++ +LE+R L+K+ STY D L   + +   RVH+ +    T TGR++S EPN+QN
Sbjct: 547 DKHPIVRLVLEYRTLTKLSSTYVDGLLKEV-ESDGRVHSVFKQTETRTGRISSTEPNMQN 605

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++ ++G+ +R+ F++     L+ ADYSQIELR+LA +     + + FE   DIH M A
Sbjct: 606 IPVRKEIGRNMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHAMTA 665

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +++FG+  + V P+MR  AK +NF IIYGI  F L+  + +  +EA  YIK Y   FP +
Sbjct: 666 SQVFGIPADMVLPEMRSAAKAVNFGIIYGIGAFSLSKDIGVSVAEAKQYIKNYLDNFPKV 725

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            ++++KT     +NGYV TIFGRR +  E+++    ++   +RAA+NAPIQG+AADI + 
Sbjct: 726 SQFMDKTVEDGIKNGYVTTIFGRRRYIPELSATNKVMQAFGKRAAMNAPIQGAAADIIKI 785

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ V++ L++ KL  +++LQ+HDEL+ EV  E+   AS ++   ME A    + L VP+
Sbjct: 786 AMVKVYQRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVLKEEMENA----VKLAVPM 841

Query: 963 KVNIKVSNNWQ 973
           +V++    +W 
Sbjct: 842 EVSVGEGESWY 852


>gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614]
 gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614]
          Length = 889

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/977 (27%), Positives = 444/977 (45%), Gaps = 97/977 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG S  YRAF+A P+ +     G   NA+ GF +ML  +L++ +     +H  V
Sbjct: 2   PRLLLLDGHSLAYRAFFALPVENFSTTTGQHTNAVYGFTSMLINVLRDEQ----PTHVGV 57

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR E Y DYKA R K P     QLPL+     A  IP ++  G+EADDIIAT
Sbjct: 58  AFDVSRQTFRLEEYADYKAKRNKTPTEFSSQLPLIEEVLNALRIPFLKKDGYEADDIIAT 117

Query: 124 YTYIA-EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
               A E     V I++ D+D +QLV+  + +   ++                   +  L
Sbjct: 118 LVTRALEDPEMEVLILTGDRDSLQLVTDRSTVLYPMRG------------------VSDL 159

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE--YAETA 240
             +T  +++   G+P         L    G   + L     + Q    + I +    +  
Sbjct: 160 ARMTPAAVEAKYGVP---PARYPELAAIVGETSDNLPGVPGVGQGYAAKWINQFDGLDNV 216

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                    R D           +    G  L + L  +   + +N +    + D    +
Sbjct: 217 I-------ARAD----------EITGKKGEALRAHLGDVIRNRHLNALVCDLELDRTPEQ 259

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             V   +  E             T     +F  L D+          + L  E     S 
Sbjct: 260 LAVQPWDRHE-----------VHTLFDGLEFRVLRDRL--------FETLTSEEEIDDSG 300

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           + +       ++    +  W+++    G      +     A      ++A++T D     
Sbjct: 301 FDVAMS----VLGAGALAAWLEQHTASGERVGLHVAGHWSAGTGDVTSLALATTDGLAA- 355

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
              V    +D++  T+                L  +  +    K+ H+ K   L L  +G
Sbjct: 356 --WVAADQLDVADQTA----------------LAGWLADPKRPKVLHDAKGPMLALAAWG 397

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           + + G + D  L +Y+    + S+D+A +  ++L    K+   +    + +D + D    
Sbjct: 398 LPLAGLDRDTALSAYLARPDQRSYDLADLTVRYLKRELKQ-GGADDGQLSLDGLDDRNAG 456

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           E  + ++  +L L   L  +L       +   ++ P++D++++ME TGI +D D L+ + 
Sbjct: 457 EIEMLHARAVLDLAAALDDELEERGGTRLLNDIELPLVDLLAKMEQTGIAVDTDHLEALE 516

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           +  +  +    E  + + G++ NL SPKQL  +LF +L  P   +TKTG           
Sbjct: 517 SHFAAEVRDAAEQAFGVIGKEINLGSPKQLQAVLFDELGMPKTKRTKTGYTTDADALQAL 576

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
               ++P + ++L  R +S+++ T  + L   +     R+HT ++     TGRL+S EPN
Sbjct: 577 YVKTEHPFLLHLLRHRDVSRLRQT-IEGLLKTVAGDG-RIHTTFNQTIAATGRLSSTEPN 634

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIPI+T+ G++IR  F+  P  + L++ADYSQIE+RI+AH+++   L + F++  D H
Sbjct: 635 LQNIPIRTEEGRRIREGFVVGPGYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFH 694

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            + AA +F V  + V+ +MR   K +N+ + YG+S F L  QL I  SEA   +  YF  
Sbjct: 695 SITAARVFDVPADDVTVEMRAKIKAMNYGLAYGLSAFGLGQQLGIEPSEARGLMDEYFQT 754

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F GI +Y+       R+ G+ ETI+GRR +  ++ S     R + ER A+NAPIQGSAAD
Sbjct: 755 FGGIRDYLGGVVEEARKAGFTETIWGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAAD 814

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + AM++V +++    LA++MLLQ+HDELVFEV   E      ++   M  A     +L
Sbjct: 815 LIKIAMLNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQEPLEVLVREQMGAAA----DL 870

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPL V++    +W E 
Sbjct: 871 AVPLDVSVGFGRSWHEA 887


>gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 903

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/979 (26%), Positives = 439/979 (44%), Gaps = 99/979 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G P NA+ GF +ML   L++       +HF
Sbjct: 12  NRPRLLLMDGHSLAYRAFFALPAENFTTAVGQPTNAVYGFMSMLANTLRDE----APTHF 67

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R + +P+YKANR K P+    Q+ L+     A       + GFEADD+I
Sbjct: 68  AVAFDVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMHADRFAVDGFEADDVI 127

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE  GF V I++ D+D  QL++    +    K      +   E V++K+G+ P+
Sbjct: 128 ATLATQAEAAGFEVLIVTGDRDSFQLITDNVTVLYPTKGVSELTRFTPEKVVEKYGLTPQ 187

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +                      Y   A L    G+  + L     + +K   + I ++ 
Sbjct: 188 Q----------------------YPDFAAL---RGDPSDNLPGIPGVGEKTAAKWINQFG 222

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A    +LV    +V           +   G      L A++  +++  +    +    
Sbjct: 223 SFA----ELVERADEV-----------KGKAGQNFRDHLDAVKMNRVLTEMVRDVELPKT 267

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E      + T   G+    EI            SL ++   ++      +        
Sbjct: 268 PAELERAPYDRTAVTGVLDILEIRN---------PSLRERLLAVDPGAAEAEPPAPAAGI 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        ++ + ++  W++           + T ++ A     I          
Sbjct: 319 ELDGA--------VLGSGEVAPWLEAHGAQPLGVMTVDTWSLGAGTVTEI---------- 360

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                         +   +        L +        +  +    K+ HN K    VL 
Sbjct: 361 -----------ALAAADGAAAWLDPTQLEEADEQAFAAWVSDPARPKVLHNAKNVMRVLP 409

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            +G  + G   D  L +Y++  GR S  + ++A ++L    +E+  +  +   +   +D 
Sbjct: 410 EHGWQLEGVTMDTALAAYLVKPGRRSFALDALAVEYLG---RELAPAAAADGQLAFGADD 466

Query: 537 QVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + ++ A+   +  +L L      +L       +   ++ P   +++++E  GI  D+  L
Sbjct: 467 RAEQDALMAQARAVLDLGDAFTTRLKEVGAAELLHDMELPTSILLARLERHGIAADRAHL 526

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  + +  +    +  +   G +FNL SPKQL +ILF +L  P   KTKTG       
Sbjct: 527 EGMEQQFAGTVQQAVKEAHAAVGREFNLGSPKQLQEILFNELGLPKTKKTKTGYTTDADA 586

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   ++ +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+S
Sbjct: 587 LAWLAAQTEHELPVLMLRHREQAKLRVT-VEGLIKTI-ATDGRIHTTFNQTVAATGRLSS 644

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F + 
Sbjct: 645 TDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSG 704

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VA+++FGV  + V  +MRR  K +++ + YG+S F L+ QL I  +EA   +  
Sbjct: 705 EDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEARVLMDT 764

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+ +     R  GY ETI GRR +  ++NS     R   ER A+NAPIQG
Sbjct: 765 YFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQG 824

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ V K+L +  L ++MLLQ+HDE+V E+ + E     +I+ H M  A   
Sbjct: 825 TAADIVKVAMLRVDKALTEAGLTSRMLLQVHDEIVLEIAKGERKQVEEILRHEMANA--- 881

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            + LR PL V++ V  +W+
Sbjct: 882 -VELRAPLDVSVGVGKDWE 899


>gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
 gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
          Length = 878

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/990 (30%), Positives = 473/990 (47%), Gaps = 128/990 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +  L L+DGSS  YRAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MENKKKLLLIDGSSVAYRAFFALYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R      GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLTVLGISWYELENYEA 116

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+    ++++K 
Sbjct: 117 DDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLMEKM 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           GI                           K    L    G+  + +   +++ +K   + 
Sbjct: 177 GIT-------------------------PKQFIDLKALMGDKSDNIPGVTKVGEKTGLKL 211

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +LEY                      LE  + E+ +G +     + L   K    ++ T 
Sbjct: 212 LLEYG--------------------SLEG-VYENIDGMKKSKMKENLINDKEQAFLSKTL 250

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   P+ + ++    +G  ++  +     +   QF                     
Sbjct: 251 AT-INITAPITIGLDDINYQGPDLDKLVPFYDEMGFKQFK-------------------- 289

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           + L    +    + SYT++       +    + T     F       +      I    +
Sbjct: 290 DNLGAAKKQEKFDVSYTEV------DRLSADMFTDDQF-FYFEILGDNYHVENIIG--FA 340

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             + K         I++  ++   +D   K  L K I +               ++ K  
Sbjct: 341 WGNDK--------AIYVSTNLDLLKDDLFKAALAKPIKT---------------YDFKRS 377

Query: 473 KLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSS 527
           K++L   G+ +     D  L  Y+L S    +++++IAQ +  Y          K  K +
Sbjct: 378 KVLLSHLGVDLPAPAFDSRLAKYLL-STVDDNELSTIAQLYTDYVLDSDEAVYGKGVKRA 436

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P   +    +  H      V+     ++  KL   +   +   +++P+ +V+++MEI G
Sbjct: 437 VPEKAV----LLSHLARKIVVLNHSEKVMLGKLTEHQQASLLFDMEQPLANVLAKMEIAG 492

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I + ++ L+++       + +L + IYDL+G +FN++SPKQLG++LF K++ P+    KT
Sbjct: 493 ISVKKETLQEMEKANQAAIDNLTQEIYDLAGMEFNINSPKQLGELLFDKMQLPTSYTKKT 552

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +TA D+ +     +PI+  ILE+RQ++K++STY   L + I K  + +HT Y    
Sbjct: 553 KTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILKDGK-IHTRYLQDL 611

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S++PNLQNIP++ + G+ IR+AF+     + L+S+DYSQIELR+LAHI+    
Sbjct: 612 TQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPETADEVLLSSDYSQIELRVLAHISNDEH 671

Query: 767 LYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
           L   F    DIH   A  +FG+   E V+P  RR+AK +NF I+YGIS + LA  L IPR
Sbjct: 672 LIAAFNEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGISDYGLANNLGIPR 731

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
             A  YI+ YF R+PGI +Y+E+     +  GYVET+F RR    +IN+   ++R   ER
Sbjct: 732 KVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRELPDINARNFNVRQFAER 791

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            AIN+PIQGSAADI + AMI++ K+L + K  TKMLLQ+HDE++ EVP++E+    +++ 
Sbjct: 792 TAINSPIQGSAADILKIAMINLDKALVEGKFKTKMLLQVHDEIILEVPKDELEAIEKLVK 851

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +ME A    I L VPL  +      W E 
Sbjct: 852 ETMESA----IELSVPLVADESAGQTWYEA 877


>gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 903

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/979 (26%), Positives = 439/979 (44%), Gaps = 99/979 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G P NA+ GF +ML   L++       +HF
Sbjct: 12  NRPRLLLMDGHSLAYRAFFALPAENFTTAVGQPTNAVYGFMSMLANTLRDE----APTHF 67

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R + +P+YKANR K P+    Q+ L+     A       + GFEADD+I
Sbjct: 68  AVAFDVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMHADRFAVDGFEADDVI 127

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE  GF V I++ D+D  QL++    +    K      +   E V++K+G+ P+
Sbjct: 128 ATLATQAEAAGFEVLIVTGDRDSFQLITENVTVLYPTKGVSELTRFTPEKVVEKYGLTPQ 187

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +                      Y   A L    G+  + L     + +K   + I ++ 
Sbjct: 188 Q----------------------YPDFAAL---RGDPSDNLPGIPGVGEKTAAKWINQFG 222

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A    +LV    +V           +   G      L A++  +++  +    +    
Sbjct: 223 SFA----ELVERAEEV-----------KGKAGQNFRDHLDAVKMNRVLTEMVRDVELPKT 267

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E      + T   G+    EI            SL ++   ++      +        
Sbjct: 268 PAELERAPYDRTAVTGVLDILEIRN---------PSLRERLLAVDPGAAEAEPPAPAAGI 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        ++ + ++  W++           + T ++ +     +          
Sbjct: 319 ELDGA--------VLGSGEVAPWLEAHGAQPLGVMTVDTWSLGSGTVTEV---------- 360

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                         +   +        L +        +  +    K+ HN K    V  
Sbjct: 361 -----------ALAAADGAAAWLDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFP 409

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            +G  + G   D  L +Y++  GR S  + ++A ++L    +E+  +  S   +   +D 
Sbjct: 410 EHGWRLEGVTMDTALAAYLVKPGRRSFALDALAVEYLG---RELAPAAASDGQLAFGADD 466

Query: 537 QVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + ++ A+   +  +L L      +L       +   ++ P   +++++E  GI  D+  L
Sbjct: 467 RAEQDALMAQARAVLDLGDAFTTRLKEVGAAELLHDMELPTSILLARLERHGIAADRAHL 526

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  + +  +    +  +   G +FNL SPKQL +ILF +L  P   KTKTG       
Sbjct: 527 EGMEQQFAGTVQQAVKEAHAAVGREFNLGSPKQLQEILFGELGLPKTKKTKTGYTTDADA 586

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   ++ +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+S
Sbjct: 587 LAWLAAQTEHELPVLMLRHREQAKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLSS 644

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F + 
Sbjct: 645 TDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSG 704

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VA+++FGV  + V  +MRR  K +++ + YG+S F L+ QL I  +EA   +  
Sbjct: 705 EDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEARVLMDT 764

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+ +     R  GY ETI GRR +  ++NS     R   ER A+NAPIQG
Sbjct: 765 YFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQG 824

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ V K+L + KL ++MLLQ+HDE+V E+ + E     +I+ H M  A   
Sbjct: 825 TAADIVKVAMLRVDKALTEAKLTSRMLLQVHDEIVLEIAKGERQQVEEILRHEMANA--- 881

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            + LR PL V++ V  +W+
Sbjct: 882 -VELRAPLDVSVGVGKDWE 899


>gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 871

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/979 (29%), Positives = 479/979 (48%), Gaps = 118/979 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D +S + RAFYA P L+   DG+  NAI GF NML+K+      ++        
Sbjct: 2   KRLLILDSNSLMNRAFYALPPLTND-DGVNTNAIYGFTNMLFKMKDEINPDN----IIAT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  + TFR++ Y +YKA R K+P  L  Q P+++   +  GI   EI GFEADDII T 
Sbjct: 57  FDKKSPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           +   E+    V I++ DKD +QL S  T +  T K             G+    +   +A
Sbjct: 117 SKFGEENDMEVYIVTGDKDALQLASEKTKVVITKK-------------GVTETAIYDYKA 163

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
              +          I       +    G+  + +     + +K   + I EY        
Sbjct: 164 FMDEFE--------ITPTQFIDVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGS------ 209

Query: 245 KLVMLRTDVP------ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            L  +  ++P      +   LE+ + +     +L + ++ +     ++ +    + D  N
Sbjct: 210 -LEEVLKNIPEISGKKLKENLENNMEQAIFSKKLATIMREVPLDINLSDIE---NADEVN 265

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           +  +       + K +  + ++D +                                   
Sbjct: 266 LTELKKLSKNLKLKSVLSKYDLDNNEA--------------------------------- 292

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I N   +KI   +++++ +  ++      F       DA     I +    L ++ 
Sbjct: 293 ELQEIANIEISKIETIEEMEEVLLSIKDRSYILF----TLNDASKYSTIELEYLILGEEG 348

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            +             H         +  ++ L+ L+ F E+E   K+ H+ K     L++
Sbjct: 349 RS-------------HVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNK 395

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           Y I ++GF+ D  + +Y++DS ++++++  +  ++L    K      K            
Sbjct: 396 YDIDIQGFDFDTAIAAYLIDSSKANYEVFDLINRFLEKDIKSDSNDLK------------ 443

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                   S+ + +L+  L+  L  E +  +Y +++ P+I V+S ME  G +I+QD L++
Sbjct: 444 -----AICSSYLKKLYEKLKEMLHKEDMDELYYKVEHPLIYVLSSMESIGFKINQDKLEE 498

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  +  + +   E+ IY+L+ E+FN+SSPKQLG ILF KL  P   KTKTG   +T Q++
Sbjct: 499 LRVKFKEQIEKTEKEIYELADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGY--STNQEV 556

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +     +PII  ++ +RQ++KI STY + L N I+     +H+ ++   T TGRL+S E
Sbjct: 557 LEKLIDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGC-IHSNFNQTVTTTGRLSSTE 615

Query: 718 PNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPIK ++G++IR+ FI       LIS DYSQIELR+LAH+A    +   FE+  D
Sbjct: 616 PNLQNIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAHVADDKNMIDAFEHHSD 675

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+E+F V +++V+  MR +AK +NF I+YGIS F LA  L+I + EAA+Y+  YF
Sbjct: 676 IHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSLAQDLKITKKEAAEYMAIYF 735

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P I EY+     + ++ GYV TI  RR    EI S    ++ + ER A+NAPIQGSA
Sbjct: 736 ERYPKIKEYLNYVSEYAKEKGYVLTILNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSA 795

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM++V+  L +  L ++++LQ+HDEL+  V ++E     Q+++  MEKA    I
Sbjct: 796 ADIIKLAMVNVYNKLREKNLNSELILQVHDELILNVKKDEFDIVKQLVIEEMEKA----I 851

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L V L V++K    W + 
Sbjct: 852 KLNVALDVDLKYGYTWYDA 870


>gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
 gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
          Length = 871

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/979 (29%), Positives = 479/979 (48%), Gaps = 118/979 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D +S + RAFYA P L+   DG+  NAI GF NML+K+      ++        
Sbjct: 2   KRLLILDSNSLMNRAFYALPPLTND-DGVNTNAIYGFTNMLFKMKDEINPDN----IIAT 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  + TFR++ Y +YKA R K+P  L  Q P+++   +  GI   EI GFEADDII T 
Sbjct: 57  FDKKSPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           +   E+    V I++ DKD +QL S  T +  T K             G+    +   +A
Sbjct: 117 SKFGEENDMEVYIVTGDKDALQLASEKTKVVITKK-------------GVTETAIYDYKA 163

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
              +          I       +    G+  + +     + +K   + I EY        
Sbjct: 164 FMDEFE--------ITPTQFIDVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGS------ 209

Query: 245 KLVMLRTDVP------ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            L  +  ++P      +   LE+ + +     +L + ++ +     ++ +    D +   
Sbjct: 210 -LEEVLKNIPEISGKKLKENLENNMEQAIFSKKLATIMREVPLDINLSDIENADDINLTE 268

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           ++ +  ++                                SK + +    +L        
Sbjct: 269 LKKLSKNLKLKS--------------------------VLSKYDLDNNEAEL-------- 294

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I N   +KI   +++++ +  ++      F       DA     I +    L ++ 
Sbjct: 295 --QEIANIEISKIETIEEMEEVLLSIKDRSYILF----TLNDASKYSTIELEYLILGEEG 348

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            +             H         +  ++ L+ L+ F E+E   K+ H+ K     L++
Sbjct: 349 RS-------------HVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNK 395

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           Y I ++GF+ D  + +Y++DS ++++++  +  ++L    K      K            
Sbjct: 396 YDIDIQGFDFDTAIAAYLIDSSKANYEVFDLINRFLEKDIKSDSNDLK------------ 443

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                   S+ + +L+  L+  L  E +  +Y +++ P+I V+S ME  G +I++D L++
Sbjct: 444 -----AICSSYLKKLYEKLKEMLHKEDMDELYYKVEHPLIYVLSSMESIGFKINKDKLEE 498

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  +  + +   E+ IY+L+ E+FN+SSPKQLG ILF KL  P   KTKTG   +T Q++
Sbjct: 499 LRVKFKEQIEKTEKEIYELADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGY--STNQEV 556

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +     +PII  ++ +RQ++KI STY + L N I+     +H+ ++   T TGRL+S E
Sbjct: 557 LEKLIDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGC-IHSNFNQTVTTTGRLSSTE 615

Query: 718 PNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPIK ++G++IR+ FI       LIS DYSQIELR+LAH+A    +   FE+  D
Sbjct: 616 PNLQNIPIKYEMGKEIRKVFIPQDSDDILISCDYSQIELRVLAHVADDKNMIDAFEHHSD 675

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+E+F V +++V+  MR +AK +NF I+YGIS F LA  L+I + EAA+Y+  YF
Sbjct: 676 IHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSLAQDLKITKKEAAEYMAIYF 735

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P I EY+     + ++ GYV TI  RR    EI S    ++ + ER A+NAPIQGSA
Sbjct: 736 ERYPKIKEYLNYVSEYAKEKGYVLTILNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSA 795

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM++V+  L +  L ++++LQ+HDEL+  V ++E     Q+++  MEKA    I
Sbjct: 796 ADIIKLAMVNVYNKLREKNLNSELILQVHDELILNVKKDEFDIVKQLVIEEMEKA----I 851

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L V L V++K    W + 
Sbjct: 852 KLNVALDVDLKYGYTWYDA 870


>gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12]
          Length = 894

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/979 (30%), Positives = 483/979 (49%), Gaps = 95/979 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA+YA   +  K   +P  A+ GF   L++LL+    E    + A  
Sbjct: 2   KRALLLDVSAMMYRAYYANMNMRTKE--MPTGAVYGFLLSLFQLLKEYESE----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD       R E+Y +YK+NR   PE L+ Q+P +     AFGI  I+I G+EADDI+ +
Sbjct: 56  FDIKRSHLKRTELYAEYKSNRDTTPEDLVKQIPYIEAILDAFGIQRIKIDGYEADDILGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +    K+G  VTI++ DKD+ QL+   T +Y   KE     E V     + PEK+  L 
Sbjct: 116 LSTKLSKKGIPVTIVTGDKDISQLLDENTEIYLLGKEVLKTREDVKNYIDVYPEKIPDLF 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRENILEYAE 238
            L GDS D IPG+  IG K A  +L++YGNLE I  N  ++       K   + + E  E
Sbjct: 176 GLIGDSSDCIPGVRKIGPKKAVPMLEKYGNLEGIYENIDKLSELPGVGKTLIQIMKEDKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LSR L  +  ++     LE                  L+F K               
Sbjct: 236 LAFLSRSLAKIERNLDFPFSLE-----------------ELQFEK--------------- 263

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                               E       +  +F S   +     +++  +K  L+     
Sbjct: 264 -------------------KEEALREIFQKLEFKSFLKRLGSEETKE--EKSLLQGNLFS 302

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +      +S T++      ++ ++  E +         +         + I  +      
Sbjct: 303 ASPRAEKESRTEVKEKNLEKKIIKSFEELKKEMEDFSEEDKILLLYDRLGITCT------ 356

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
              F  + +++       +   G N   +E     K+FF         +++K     L++
Sbjct: 357 ---FSQKNLYLPFFH---EGLLGNNLDLEEC----KQFFSTLKGKIYTYHLKE----LYK 402

Query: 479 YGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            G S  +   D+M+  Y L S ++  D   I Q +L     E  K+  +   ++ +S   
Sbjct: 403 LGFSFSKPVYDMMIA-YHLVSSQTKEDYTLIGQYYLK-KIAEDEKTVFAKQKLESLSAEV 460

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +  +  + V+     +L   +  ++L  V    + P+I V++ ME  GI+ID+   + 
Sbjct: 461 YGDFLLNRAGVLYSCLDILEEDVKEKELEAVLWETELPLIPVLADMERIGIKIDRKYFEA 520

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
            S E+++ L  LE+ I++ +GE+FNL+SPKQLG+ILF KL  P+G KTKTG + T  + L
Sbjct: 521 YSLELTEKLALLEKAIWEEAGEEFNLNSPKQLGEILFLKLNLPTGKKTKTG-FSTDVEVL 579

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E ++     I  N+LE+R+L+K+K+TY D +P    +   R+HT Y    T+TGRL+S +
Sbjct: 580 EHLSSQGFQIASNLLEYRKLAKLKNTYVDPIPKMTGEGD-RIHTCYHQIGTVTGRLSSSD 638

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP+KT+ G +IR+ FI+    KL+S DYSQ+ELR+LA ++K   L + ++   D+
Sbjct: 639 PNLQNIPVKTEEGIRIRQGFIAREGWKLLSIDYSQVELRVLASLSKDENLLKAYQEKQDL 698

Query: 778 HRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H + A  IF +   E+VS + R  AK INFSIIYG +PF LA +L I   +A +YIKRYF
Sbjct: 699 HSVTAKRIFELQEDEEVSREQRIMAKIINFSIIYGKTPFGLAKELGISVKDAGEYIKRYF 758

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++P + ++  +   F  ++GYVET FGRR   D I+S    +++  ER A+N  +QG+A
Sbjct: 759 AQYPRVAQFERQVITFAEEHGYVETYFGRRRIIDGIHSKNKMVKSQAERMAVNTVVQGTA 818

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           A+I ++ MI ++  L   K    +LLQ+HDEL+FE+ E ++    + ++  M +    + 
Sbjct: 819 AEILKKVMIKIYSWL-SQKTDIHLLLQVHDELIFEIQEGKLQEYEENLIRFMRETIQLE- 876

Query: 957 NLRVPLKVNIKVSNNWQEE 975
              V L+VN  + + W E 
Sbjct: 877 --EVELEVNTNIGDTWAEA 893


>gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 863

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/968 (27%), Positives = 450/968 (46%), Gaps = 118/968 (12%)

Query: 15  FIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFR 73
             +RAFYA P  +     G   NA+ GF +ML  ++   + E    +  V FD    TFR
Sbjct: 1   MAFRAFYALPAENFATSGGQHTNAVYGFLSMLANIIAEEKPE----YVGVAFDVGRKTFR 56

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
            E++P+YKA R   PE    Q+ L+R      GI  +  + FEADDI+AT    A    F
Sbjct: 57  TEMFPEYKAQREAAPEEFRGQVDLIREVLGTLGITTLSRENFEADDIVATLATQATD--F 114

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
              I++ D+D +QLV+  T +   ++      +   + V++K+G+ P +     AL GD 
Sbjct: 115 ETLIVTGDRDYLQLVNEDTTVLYPMRGVSTLHRFTPDAVVEKYGLTPRQYPDFAALRGDP 174

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DN+P +P                         ++ +K   + ILEY             
Sbjct: 175 SDNLPSVP-------------------------KVGEKTATKWILEYG------------ 197

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
                    LE LI    +        K +      +R+               +D+  T
Sbjct: 198 --------SLEGLIEHAEDI-------KGVAGQNFRDRIEQVRMNRKLTQMITDMDLEVT 242

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
                        D   K +  S ++++   +      ++  L+ +              
Sbjct: 243 -----------PADLQFKGAAVSEVAERFDALEFGGGLRERVLDAIPNDGGEAPAQTEVP 291

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
                       Q L+     +                       D + D         +
Sbjct: 292 TQETEIVDAPLKQWLKGKKDVAV------------------FVQGDGRPDRGDASAIALV 333

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-ED 488
           D   H  Q   G+  L+ E  + L ++  N    K  H  K    +L   GI +RG   D
Sbjct: 334 DADFHGMQLELGE--LSAEDDAALAQWL-NSDAPKYFHEAKAAFHMLAGRGIELRGIAHD 390

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + +Y+L  G+ +++++ + Q+ L    K+ L      + +  + D+ +    ++ +  
Sbjct: 391 TAIAAYLLRPGQRTYELSDVYQRHL----KKTLGQASDQLSL--LDDTSL----VDQAAA 440

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           I++L   L  +L       +Y  L+ P++ ++++ME TGI +D ++L+       + +  
Sbjct: 441 IMELAAELTKQLQAIDSFELYTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAE 500

Query: 609 LEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NP 666
            E    +L+G+   NL+SPKQL  +LF   + P   KTKTG + T A+++EQ+     +P
Sbjct: 501 QERAARELAGDDSLNLNSPKQLQAVLFETFEMPKTKKTKTG-YSTAAKEIEQLAVNHPHP 559

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            + ++L  R+  K+K+T  + L   +     R+HT ++     TGRL+S EPNLQNIP++
Sbjct: 560 FLDHLLAHREYQKMKTTL-EGLIKTVQPDG-RIHTTFNQTVASTGRLSSTEPNLQNIPVR 617

Query: 727 TDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           T+ G++IR AFI     + L++ADYSQIE+R++AH+++   L + +    D+H  V +++
Sbjct: 618 TEAGRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLHNYVGSKV 677

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F V +++V+P++RR  K +++ ++YG+S F L+ QL IP  EA + ++ YF RF G+  Y
Sbjct: 678 FDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAREAKEIMENYFERFGGVKRY 737

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++      R++GY  T+FGRR +  E+NS     R   ERAA+NAPIQG+AADI + AMI
Sbjct: 738 LDNVVEKARKDGYTATVFGRRRYLPELNSDNRLARENAERAALNAPIQGTAADIIKVAMI 797

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V  +L D  L +++LLQ+HDELV EV   E     +I+   M+ A    I L VPL+V+
Sbjct: 798 RVDNALRD--LKSRVLLQVHDELVVEVAPGEADEVKKILEREMDSA----IELTVPLEVS 851

Query: 966 IKVSNNWQ 973
                +W 
Sbjct: 852 AGAGKDWD 859


>gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
 gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
          Length = 903

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/979 (26%), Positives = 439/979 (44%), Gaps = 99/979 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G P NA+ GF +ML   L++       +HF
Sbjct: 12  NRPRLLLMDGHSLAYRAFFALPAENFTTAVGQPTNAVYGFMSMLANTLRDE----APTHF 67

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R + +P+YKANR K P+    Q+ L+     A       + GFEADD+I
Sbjct: 68  AVAFDVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMRADRFAVDGFEADDVI 127

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE  GF V I++ D+D  QL++    +    K      +   E V++K+G+ P+
Sbjct: 128 ATLATQAEAAGFEVLIVTGDRDSFQLITENVTVLYPTKGVSELTRFTPEKVVEKYGLTPQ 187

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +                      Y   A L    G+  + L     + +K   + I ++ 
Sbjct: 188 Q----------------------YPDFAAL---RGDPSDNLPGIPGVGEKTAAKWINQFG 222

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A    +LV    +V           +   G      L A++  +++  +    +    
Sbjct: 223 SFA----ELVERAEEV-----------KGKAGQNFRDHLDAVKMNRVLTEMVRDVELPKT 267

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             E      + T   G+    EI            SL ++   ++      +        
Sbjct: 268 PAELERAPYDRTAVTGVLDILEIRN---------PSLRERLLAVDPGAAEAEPPAPAAGI 318

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                        ++ + ++  W++           + T ++ +     +          
Sbjct: 319 ELDGA--------VLGSGEVAPWLEAHGAQPLGVMTVDTWSLGSGTVTEV---------- 360

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                         +   +        L +        +  +    K+ HN K    V  
Sbjct: 361 -----------ALAAADGAAAWLDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFP 409

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            +G  + G   D  L +Y++  GR S  + ++A ++L    +E+  +  S   +   +D 
Sbjct: 410 EHGWRLEGVTMDTALAAYLVKPGRRSFALDALAVEYLG---RELAPAAASDGQLAFGADD 466

Query: 537 QVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           + ++ A+   +  +L L      +L       +   ++ P   +++++E  GI  D+  L
Sbjct: 467 RAEQDALMAQARAVLDLGDAFTTRLKEVGAAELLHDMELPTSILLARLERHGIAADRAHL 526

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + +  + +  +    +  +   G +FNL SPKQL +ILF +L  P   KTKTG       
Sbjct: 527 EGMEQQFAGTVQQAVKEAHAAVGREFNLGSPKQLQEILFGELGLPKTKKTKTGYTTDADA 586

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   ++ +   +L  R+ +K++ T  + L   I     R+HT ++     TGRL+S
Sbjct: 587 LAWLAAQTEHELPVLMLRHREQAKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLSS 644

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L + F + 
Sbjct: 645 TDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSG 704

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D+H  VA+++FGV  + V  +MRR  K +++ + YG+S F L+ QL I  +EA   +  
Sbjct: 705 EDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEARVLMDT 764

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF RF G+ +Y+ +     R  GY ETI GRR +  ++NS     R   ER A+NAPIQG
Sbjct: 765 YFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQG 824

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI + AM+ V K+L + KL ++MLLQ+HDE+V E+ + E     +I+ H M  A   
Sbjct: 825 TAADIVKVAMLRVDKALTEAKLTSRMLLQVHDEIVLEIAKGERKQVEEILRHEMANA--- 881

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            + LR PL V++ V  +W+
Sbjct: 882 -VELRAPLDVSVGVGKDWE 899


>gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 887

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/981 (30%), Positives = 463/981 (47%), Gaps = 112/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAF+A    L R    DGL  NAI GF  ML  +++        +  
Sbjct: 8   KKLLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMIKAVE----PTDM 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR  +Y +YK  R K P     Q+P ++    A+GI   E++ +EADDII
Sbjct: 64  LVAFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDII 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A++ G+  T+++ D+DL QL +  T +  TVK     +  V +++         
Sbjct: 124 GTLAGQADQTGYTTTVVTGDRDLTQLTTEHTTVAVTVKG----VSEV-ERY--------- 169

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
               T   ++   GI          L    G+  +     +++ +K   +          
Sbjct: 170 ----TPAHVEEKLGITPAQIIDMKGLT---GDTSDNYPGVTKVGEKTALK---------- 212

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                             LK     + I       D    +   
Sbjct: 213 ---------------------------------LLKQYGTMEGI---YENIDAMKQSKMK 236

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L  +  +     +   I RD  I         D           QK+  +   K    
Sbjct: 237 EHLIEDREQAAQAKVLATIKRDAPIDVQLADLSYDGPDLDQLAAFYQKMDFQSFLKKLHL 296

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +  + T I  T   +  + +L+          TD +D +   P             ++
Sbjct: 297 QSDEPA-TPIDYTVLTKANLTELQQF--------TDHVDFYLEMPT-------PNYHTSA 340

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F    I  D   + S+D       T      +     +    K   ++K   + L+R GI
Sbjct: 341 FAGFAIGADDHWYISRDVELLMQPT------VADLLSSTTITKDVFDMKRTTVGLNRLGI 394

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDS 536
            +   + D++L+SY+LD+  +S+D+ S+A++     L        K  K +IP D   D 
Sbjct: 395 QLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPED---DD 451

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               H       I  L   L  +L   +   +Y+ ++KPM +V++QMEI GI +D   LK
Sbjct: 452 VFFSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQMEIAGITVDSSRLK 511

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            + ++ ++ L  +E+ IY  +GE+FN++SPKQLG ILF ++K P   KTKTG   +TA D
Sbjct: 512 AMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLGHILFEEMKLPVIKKTKTGY--STAVD 569

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +    + PI+ NIL++RQ+SKI+STY   L + I+   Q+VHT Y    T TGRL+S+
Sbjct: 570 VLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGRLSSV 629

Query: 717 EPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++ + G+KIR+AF+      ++ S+DYSQIELR+LAHI     +   F+   
Sbjct: 630 DPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGD 689

Query: 776 DIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           DIH   A  IF +N  E+V+P +RR AK +NF I+YGIS + L+  + I R +A  +I  
Sbjct: 690 DIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGITRKQARSFIDA 749

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+ +Y+++     ++ GYVETI  RR +  +INS   + R+  ER A+N PIQG
Sbjct: 750 YFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSFAERTAMNTPIQG 809

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI +   L+   L   MLLQ+HDEL+FE P+EEI    +++   M+ A   
Sbjct: 810 SAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEKLVPSVMDSA--- 866

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L VPLKV     + W + 
Sbjct: 867 -VQLAVPLKVESHYGDTWYDA 886


>gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
 gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
          Length = 882

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/981 (30%), Positives = 463/981 (47%), Gaps = 112/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAF+A    L R    DGL  NAI GF  ML  +++        +  
Sbjct: 3   KKLLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMIKAVE----PTDM 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR  +Y +YK  R K P     Q+P ++    A+GI   E++ +EADDII
Sbjct: 59  LVAFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDII 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A++ G+  T+++ D+DL QL +  T +  TVK        V +     P  +  
Sbjct: 119 GTLAAQADQTGYTTTVVTGDRDLTQLTTEHTTVAVTVKG-------VSEVEHYTPAHVEE 171

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              +T   I ++ G+               G+  +     +++ +K   +          
Sbjct: 172 KLGITPAQIIDMKGLT--------------GDTSDNYPGVTKVGEKTALK---------- 207

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                             LK     +    +    D    +   
Sbjct: 208 ---------------------------------LLKQYGTMEG---IYENIDAMKQSKMK 231

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L  +  +     +   I RD  I         D           QK+  +   K    
Sbjct: 232 EHLIEDREQAAQAKVLATIKRDAPIDVQLADLSYDGPDLDQLAAFYQKMDFQSFLKKLHL 291

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +  + T I  T   +  + +L+          TD +D +   P             ++
Sbjct: 292 QSDEPA-TPIDYTVLTKANLTELQQF--------TDHVDFYLEMPT-------PNYHTSA 335

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F    I  D   + S+D       T      +     +    K   ++K   + L+R GI
Sbjct: 336 FAGFAIGADDHWYISRDVELLMQPT------VADLLSSTTITKDVFDMKRTTVGLNRLGI 389

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDS 536
            +   + D++L+SY+LD+  +S+D+ S+A++     L        K  K +IP D   D 
Sbjct: 390 QLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPED---DD 446

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               H       I  L   L  +L   +   +Y+ ++KPM +V++QMEI GI +D   LK
Sbjct: 447 VFFSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQMEIAGITVDSSRLK 506

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            + ++ ++ L  +E+ IY  +GE+FN++SPKQLG ILF ++K P   KTKTG   +TA D
Sbjct: 507 AMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLGHILFEEMKLPVIKKTKTGY--STAVD 564

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +    + PI+ NIL++RQ+SKI+STY   L + I+   Q+VHT Y    T TGRL+S+
Sbjct: 565 VLEKLAPEAPIVANILQYRQISKIQSTYVVGLLDAIHSADQKVHTRYLQTLTQTGRLSSV 624

Query: 717 EPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++ + G+KIR+AF+      ++ S+DYSQIELR+LAHI     +   F+   
Sbjct: 625 DPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGD 684

Query: 776 DIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           DIH   A  IF +N  E+V+P +RR AK +NF I+YGIS + L+  + I R +A  +I  
Sbjct: 685 DIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGITRKQARSFIDA 744

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+ +Y+++     ++ GYVETI  RR +  +INS   + R+  ER A+N PIQG
Sbjct: 745 YFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSFAERTAMNTPIQG 804

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI +   L+   L   MLLQ+HDEL+FE P+EEI    +++   M+ A   
Sbjct: 805 SAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEKLVPSVMDSA--- 861

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L VPLKV     + W + 
Sbjct: 862 -VQLAVPLKVESHYGDTWYDA 881


>gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 882

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/981 (30%), Positives = 463/981 (47%), Gaps = 112/981 (11%)

Query: 5   NHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAF+A    L R    DGL  NAI GF  ML  +++        +  
Sbjct: 3   KKLLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMIKAVE----PTDM 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR  +Y +YK  R K P     Q+P ++    A+GI   E++ +EADDII
Sbjct: 59  LVAFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDII 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    A++ G+  T+++ D+DL QL +  T +  TVK     +  V +++         
Sbjct: 119 GTLAGQADQTGYTTTVVTGDRDLTQLTTEHTTVAVTVKG----VSEV-ERY--------- 164

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
               T   ++   GI          L    G+  +     +++ +K   +          
Sbjct: 165 ----TPAHVEEKLGITPAQIIDMKGLT---GDTSDNYPGVTKVGEKTALK---------- 207

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                             LK     +    +    D    +   
Sbjct: 208 ---------------------------------LLKQYGTMEG---IYENIDAMKQSKMK 231

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             L  +  +     +   I RD  I         D           QK+  +   K    
Sbjct: 232 EHLIEDREQAAQAKVLATIKRDAPIDVQLADLSYDGPDLDQLAAFYQKMDFQSFLKKLHL 291

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +  + T I  T   +  + +L+          TD +D +   P             ++
Sbjct: 292 QSDEPA-TPIDYTVLTKANLTELQQF--------TDHVDFYLEMPT-------PNYHTSA 335

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F    I  D   + S+D       T      +     +    K   ++K   + L+R GI
Sbjct: 336 FAGFAIGADDHWYISRDVELLMQPT------VADLLSSTTITKDVFDMKRTTVGLNRLGI 389

Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDS 536
            +   + D++L+SY+LD+  +S+D+ S+A++     L        K  K +IP D   D 
Sbjct: 390 QLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPED---DD 446

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               H       I  L   L  +L   +   +Y+ ++KPM +V++QMEI GI +D   LK
Sbjct: 447 VFFSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQMEIAGITVDSSRLK 506

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            + ++ ++ L  +E+ IY  +GE+FN++SPKQLG ILF ++K P   KTKTG   +TA D
Sbjct: 507 AMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLGHILFEEMKLPVIKKTKTGY--STAVD 564

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +    + PI+ NIL++RQ+SKI+STY   L + I+   Q+VHT Y    T TGRL+S+
Sbjct: 565 VLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGRLSSV 624

Query: 717 EPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++ + G+KIR+AF+      ++ S+DYSQIELR+LAHI     +   F+   
Sbjct: 625 DPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGD 684

Query: 776 DIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           DIH   A  IF +N  E+V+P +RR AK +NF I+YGIS + L+  + I R +A  +I  
Sbjct: 685 DIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGITRKQARSFIDA 744

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +PG+ +Y+++     ++ GYVETI  RR +  +INS   + R+  ER A+N PIQG
Sbjct: 745 YFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSFAERTAMNTPIQG 804

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAADI + AMI +   L+   L   MLLQ+HDEL+FE P+EEI    +++   M+ A   
Sbjct: 805 SAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEKLVPSVMDSA--- 861

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
            + L VPLKV     + W + 
Sbjct: 862 -VQLAVPLKVESHYGDTWYDA 881


>gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
          Length = 878

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/992 (29%), Positives = 462/992 (46%), Gaps = 135/992 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  +++        +
Sbjct: 2   KKNKLLLIDGSSVAFRAFFALYNQIDRFKSPTGLHTNAIYGFNLMLDHMMKRIE----PT 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYKA R K P+    Q P +R    A G+   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELDQYEADD 117

Query: 120 IIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           II T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K G
Sbjct: 118 IIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEKMG 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I                                L    G+  + +   ++I +K   + +
Sbjct: 178 IT-------------------------PTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLL 212

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVAT 290
            E+                          I E+ +  +     + L   +    ++R   
Sbjct: 213 TEFGSL---------------------DGIYENIDSMKASKMKENLIADKEKAFLSRTLA 251

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T D  A    P+ + ++    +G  ++        +    F  L  Q    +S++     
Sbjct: 252 TIDTQA----PIEIGLDDIVYQGPKVDELGQFYDDM---GFKQLRAQLGTTSSQEEAVLD 304

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
           F    +                           L+      F+I+    +      + +A
Sbjct: 305 FQIVTEISP----------------------AMLKQDQFFYFEIL--GENYHREDLVGLA 340

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
               ++              +      DS             L+ F EN+      ++ K
Sbjct: 341 WGDKEKIY------------VGGPELLDSP-----------VLRDFLENQTIK--TYDFK 375

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRK 525
             K++L R  I++     D  L  Y+L S    + + +IA  +    L        K  K
Sbjct: 376 RGKVLLDRKEITLPPATFDSRLAKYLL-STVEDNSLTTIANLYGQISLVPDEAVYGKGAK 434

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             +P  +I       H      V+++    +  KL   + L +   ++ P+ +V+++MEI
Sbjct: 435 LDLPEREI----FFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEI 490

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+++ + LK + +E    +  L + IY+L+G++FN++SPKQLG ILF ++  P     
Sbjct: 491 AGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGIILFEEMGLPLEYTK 550

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KT    +TA D+ +      P++  ILE+RQ++K++STY   L + I +  + +HT Y  
Sbjct: 551 KTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGK-IHTRYVQ 609

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S +PNLQNIP++ + G+ IR+AF+       L+++DYSQIELR+LAHI++ 
Sbjct: 610 DLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQD 669

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             L + F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L+  L I
Sbjct: 670 KHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGI 729

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EA  YI  YF RFPGI  Y+E      R  GYVETI+ RR    +INS   ++RN  
Sbjct: 730 TRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVRNFA 789

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN+PIQGSAADI + AMI++ K+L +  LAT+MLLQ+HDE+V EVP  E+ T   +
Sbjct: 790 ERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAM 849

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +  +ME A    I+L VPL V+      W E 
Sbjct: 850 VKETMESA----ISLSVPLIVDENEGPTWYEA 877


>gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
 gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
          Length = 929

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/994 (29%), Positives = 473/994 (47%), Gaps = 117/994 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +K   +FL+D   F++RA++A           G+P +A   F NML KL Q+   E IA+
Sbjct: 30  KKLGRVFLIDTFGFVFRAYHAMARQRPMSTKTGIPTSATYVFVNMLNKLRQDFAPEHIAA 89

Query: 60  ------------HFAVI----FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
                         AV     FD    TF+   Y  YKANR ++PE L  Q+P +  A  
Sbjct: 90  IMEGGKTFRDEEAAAVATINKFDIKTQTFQEIAYGGYKANRTEMPEDLTQQMPYIERALN 149

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI 163
           A+ IP I  +GFEADD+I T    A   G+ V I+S+DKD+MQLV+   C+ +  K    
Sbjct: 150 AYRIPMISAEGFEADDVIGTLAKKAADGGYPVYIVSSDKDMMQLVTERVCILNPPK---- 205

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG-NLENILINAS 222
                                     ++ I G+P    +    ++   G +++N+   A 
Sbjct: 206 -----------------DNLICDPKKVEEILGVP---PERVVDVMALRGDSIDNV-PGAP 244

Query: 223 RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
            I  K               S +L+     V   +     +        L     A+ F+
Sbjct: 245 GIGDKG--------------SVQLIQRFGTVEAALDHAGEVESKRQRESLQQNRDAVLFS 290

Query: 283 KLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
           K +  + T  D           D +    K +  E E           F++L  Q     
Sbjct: 291 KRMVTIRTDIDMPFEPQAMRAQDPDYEACKALFAELE-----------FNNLLKQFLTEG 339

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           SE                  +    Y    +T +I+  ++ +      +  I      + 
Sbjct: 340 SE------------------VGETDYADAKSTDEIKALLRDVNADHPLAVAIAHLDAPSL 381

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIF-IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
            ++               +  V T     +++ + + +     L  E    +++   +  
Sbjct: 382 AAEEAEPEEDAPQLALAMAEPVATPQVTSVALSSREGAARAVELKGESGEVVRRALADPT 441

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
             K  H+ K         G+ +     D ML  Y+LD   +++ +  +  + L+      
Sbjct: 442 VPKAVHDAKAAMHA----GLPLESVEHDTMLYEYLLDPTYTTYRLPDVVLRRLNL----- 492

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
                 ++P              E +++  +L   L   +    L+ VYE +D+P++ V+
Sbjct: 493 --KLAGTLP--------------EAADMTHRLTTKLHKLVEDGGLMKVYEDIDRPLVTVL 536

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             ME  G+++D D+L ++S  + ++  +L   IY LSG++FN++SPKQLGD+LF KL  P
Sbjct: 537 YAMEAAGVKLDCDVLAEMSTRLQRDADALARKIYGLSGQEFNINSPKQLGDVLFNKLNLP 596

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
              K   G+  +TA D+ +   G++ + K +LE+RQ +K+KSTY D+LPN  +  T R+H
Sbjct: 597 KPVKYGKGKTISTAVDVLEGLAGEHEVPKLVLEYRQFTKLKSTYVDALPNLCHAGTGRLH 656

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T ++ A+T TGRL+S+ PNLQNIPI+T+LG++IR AF++     L++ADYSQIELR+LAH
Sbjct: 657 TTFAQAATSTGRLSSVNPNLQNIPIRTELGREIRAAFVAEKGNVLLAADYSQIELRLLAH 716

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
            ++   L   + N  DIH + A+E+FGV    +  + RR AK +NF I+YGISPF L+ Q
Sbjct: 717 FSQDRLLVDAYNNDRDIHALTASEVFGVPPMMIDAEHRRRAKAVNFGIVYGISPFGLSQQ 776

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I   E+  YI+ YF R+ G+ E++      VR++  V T+FGR     +I+S   ++R
Sbjct: 777 LGIDTKESKRYIESYFERYSGVREWLNSVLEQVRKDEKVSTLFGRIRPIPDIHSRNPNLR 836

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A N P+QG+AAD+ + AMI +H+ L + KL T+MLLQ+HDELVFEVP+ E+   
Sbjct: 837 GFAERTATNTPLQGTAADLIKLAMIRIHRDLIERKLKTRMLLQVHDELVFEVPQAEVEEV 896

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++   ME        L VPLKV++ V  NW++
Sbjct: 897 RALVQDRMENV---HPELTVPLKVDVGVGKNWRD 927


>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
 gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
          Length = 887

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/979 (28%), Positives = 434/979 (44%), Gaps = 106/979 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  ++L+DG++  YRAFYA   L+R  DG P NAI    N   ++L N  ++    + A
Sbjct: 10  DKEPVYLIDGTALFYRAFYARTDLARA-DGFPTNAI----NTTLRVLLNMLRDENPRYVA 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            + D    TFR+++Y  YKA RP +PE L  Q+  VR   +  G+  +   G EADD I 
Sbjct: 65  FMMDGKGPTFRHQLYDRYKAQRPAMPEPLAMQIEPVRRGVELLGVRLLVSDGVEADDCIC 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD--TVKEEKIDIEHVIKKWGIPPEKMV 180
                 ++E   V ++++DKDL Q +     + +     E+ I +E   ++ G+ P +  
Sbjct: 125 ALAKRYKQE-RPVVVVASDKDLKQCLDHNVVILNQAGKTEKIITLESFREEEGMEPSQWP 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QA+ GDS DNIPGIP +G  TA  +++    LE +  N + +   K RE +    E  
Sbjct: 184 DFQAIIGDSADNIPGIPKVGPVTARKIMETCPTLEALRDNCAALPA-KLREKVEPELENV 242

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L R+L  ++TD     PL+H  L+  +   L +FL   E   L   +  T         
Sbjct: 243 FLYRELTRMKTDCC-DQPLDHFALQPMDLDGLRAFLDEYELRGLKQALPKT--------- 292

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                       G A        +     QFS           +  P             
Sbjct: 293 --SAPSGKPGASGSASSKTSGGASPQAGGQFSLFGAPMPAPAQDDEPPMTEA-------- 342

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI---STLDQK 417
                                              TD + +   + + +     +     
Sbjct: 343 ---------------------------------TSTDALPSLAGEDVGLVFEDNAFFIGM 369

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +   ++       L+      S       +++L     +         G+ +        
Sbjct: 370 EGREYRYTGPADALARALEHASVIATPSVQDLLRADAAW---------GYLLSSQW---- 416

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
                     D+ L +Y+LD    ++    + Q      R E  +   +  P        
Sbjct: 417 ---------FDLSLAAYLLDPEARNYTWPRLRQSLFQDGRSEFAELAATLHPKA------ 461

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                       L     +R ++    L  +   L+ P+I V+  ME  GI +D D    
Sbjct: 462 -------RGLAALAYMRGIRGQVESAHLSTLMRDLEIPLIPVLVSMEQAGIGVDLDAFAG 514

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              ++S  L  L  +I   +GE FN+ S +QL  ILF KL    G KT TGQ  T  Q L
Sbjct: 515 FLDDVSTQLDELTRSIIRHAGEPFNIRSSQQLAAILFDKLDIKEGNKTATGQRSTANQVL 574

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E I    +PI+++ILE+R L K++STY + LP  + + + R+HT ++  +T TGRL+S +
Sbjct: 575 EAIRSR-HPIVEDILEYRMLEKLRSTYLEPLPKLVGEDS-RLHTHFNQLATATGRLSSSQ 632

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+   G ++R  FI+ P   L +ADYSQIELR+LAH +    L   F N  DI
Sbjct: 633 PNLQNIPIRGKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDI 692

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   AA +     + V    RR+AKTINF +IYG+ P +LA +L I  ++A ++I+RYF 
Sbjct: 693 HTRTAALLTDKQPQDVLADERRNAKTINFGLIYGMGPQKLARELDITVNQAKEFIERYFD 752

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           +   +  Y +        +G+V T+ GRR    E++S  + + +   R A+N  IQGSAA
Sbjct: 753 KLATLKAYYDTIVKDAESHGFVTTLAGRRRLLPELHSRNTQLVSQARRQAVNTVIQGSAA 812

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM++ HK  +   L   ++LQ+HDEL+ E PE  I  A + +   M+       +
Sbjct: 813 DIIKMAMVAAHKDKDLAALGAHVILQVHDELIIEAPEASIRPAGERLKTIMQSVA----D 868

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPLKV++ +   W E +
Sbjct: 869 LAVPLKVDLGLGRTWAEAH 887


>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
 gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
          Length = 878

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/992 (29%), Positives = 462/992 (46%), Gaps = 135/992 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  +++        +
Sbjct: 2   KKNKLLLIDGSSVAFRAFFALYNQIDRFKSPTGLHTNAIYGFNLMLDHMMKRIE----PT 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYKA R K P+    Q P +R    A G+   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELAQYEADD 117

Query: 120 IIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           II T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K G
Sbjct: 118 IIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEKMG 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I                                L    G+  + +   ++I +K   + +
Sbjct: 178 IT-------------------------PTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLL 212

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVAT 290
            E+                          I E+ +  +     + L   +    ++R   
Sbjct: 213 TEFGSL---------------------DGIYENIDSMKASKMKENLIADKEKAFLSRTLA 251

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T D  A    P+ + ++    +G  ++        +    F  L  Q    +S++     
Sbjct: 252 TIDTQA----PIEIGLDDIVYQGPKVDELGQFYDDM---GFKQLRAQLGTTSSQEEAVLD 304

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
           F    +                           L+      F+I+    +      + +A
Sbjct: 305 FQIVTEISP----------------------AMLKQDQFFYFEIL--GENYHREDLVGLA 340

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
               ++              +      DS             L+ F EN+      ++ K
Sbjct: 341 WGDKEKIY------------VGGPELLDSP-----------VLRDFLENQTIK--TYDFK 375

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRK 525
             K++L R  I++     D  L  Y+L S    + + +IA  +    L        K  K
Sbjct: 376 RGKVLLDRKEITLPPATFDSRLAKYLL-STVEDNSLTTIANLYGQISLVPDEAVYGKGAK 434

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             +P  +I       H      V+++    +  KL   + L +   ++ P+ +V+++MEI
Sbjct: 435 LDLPEREI----FFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEI 490

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+++ + LK + +E    +  L + IY+L+G++FN++SPKQLG ILF ++  P     
Sbjct: 491 AGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGTILFEEMGLPLEYTK 550

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KT    +TA D+ +      P++  ILE+RQ++K++STY   L + I +  + +HT Y  
Sbjct: 551 KTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGK-IHTRYVQ 609

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S +PNLQNIP++ + G+ IR+AF+       L+++DYSQIELR+LAHI++ 
Sbjct: 610 DLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQD 669

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             L + F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L+  L I
Sbjct: 670 KHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGI 729

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EA  YI  YF RFPGI  Y+E      R  GYVETI+ RR    +INS   ++RN  
Sbjct: 730 TRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVRNFA 789

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN+PIQGSAADI + AMI++ K+L +  LAT+MLLQ+HDE+V EVP  E+ T   +
Sbjct: 790 ERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAM 849

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +  +ME A    I+L VPL  +    + W E 
Sbjct: 850 VKETMESA----ISLSVPLIADENEGSTWYEA 877


>gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ]
          Length = 883

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/978 (30%), Positives = 480/978 (49%), Gaps = 105/978 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K N L +VD SSFI+RAFYA  +L    +G+PVNA+ G       +L     +   SH
Sbjct: 5   MAK-NRLIIVDISSFIFRAFYAIRVLH-SPEGVPVNAVHGV----LSMLLKLLSKYQPSH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             +  D    +FRNE++  YKANR + PE L PQ  L++       +P+  ++GFEADD+
Sbjct: 59  ILLARDTKGGSFRNELFDQYKANRSEPPEELKPQFDLIKQLIDHMELPSSTVEGFEADDL 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +     + +   + I S DKDLMQ V     + DT+K++  D E V +K G+ PE++V
Sbjct: 119 IGSACVQWKSDFDEILIASGDKDLMQFVGDNIKMLDTMKDKTYDREGVFEKMGVYPEQIV 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              ++ GD+ DNIPG+ GIG K AA LL E+G LE  +     +K               
Sbjct: 179 DYLSMVGDASDNIPGMKGIGAKGAAKLLAEHGTLEKCIEIKDTLKG-------------- 224

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              +KL                                     L+++       D     
Sbjct: 225 ---KKLTTA--------------------------FGEYLEDGLLSKSLIEIKTD----- 250

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V L + +T++K      +   D        S+L               + LE L+    
Sbjct: 251 -VDLGLKSTDSKFSFYPADSLFDFLRGLGFKSAL---------------VKLEDLKFAHH 294

Query: 361 YPINNDSYTKIVNTKDIQ--QWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
               +  ++  V+   I+  +W   +LE        +    +D         ++S    K
Sbjct: 295 QSEQDGEFSVNVDGPSIKVGEWSDAELECDTYLGLDVQYTNLDTRSLDI--HSLSISKNK 352

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           ++  +  E     L                     L+K    +       + K       
Sbjct: 353 NEAFYIKEEQAKPL---------------------LEKILTTDTLKVATADYKSLLYYSL 391

Query: 478 RYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           R  I +     D++   +V + G   + I S+++K+L  +     K  K  +P  +  + 
Sbjct: 392 RNEIEISAEVFDVVQAQFVANPGE-KNTIESLSEKFLGSSIPAFEK--KKPLP-SENEED 447

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            VQE +   ++   ++   L  +L  ++LL+V+  +D  +  V++ ME  G+ I++    
Sbjct: 448 LVQEISTARAHSCFRVSEFLLEELERKELLNVFHDIDNKLTPVLAAMEYEGVHINKAFFS 507

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +   E+   L  L+ ++   S E  NL+SPKQ+G +LF +L+ P G KTKTG    ++  
Sbjct: 508 EYEKELQTKLDELQASVDKFSKEPVNLNSPKQVGVLLFEELELPVGKKTKTGYSTDSSVL 567

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            +    G + +   ILE+R++ KI STY  ++P  +N+ + ++HT ++     TGRL+S 
Sbjct: 568 EDLAAKGLSEVPALILEYREVGKILSTYVKAIPELLNEASGKIHTHFNQNVAATGRLSSN 627

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPI+++LG+++R+ FI+ P K L++ADYSQ+ELR+LAH +    +   F+  +D
Sbjct: 628 HPNLQNIPIRSELGRRVRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFKKGVD 687

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  A+EI GV +E+V    R  AK +NF ++YG S F LA  L+IPR EA +YI  YF
Sbjct: 688 IHRRTASEIMGVPVEEVGSNDRSKAKAVNFGLMYGQSSFGLAAALKIPRKEAKEYITNYF 747

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RF  +  Y++  K    + GY  T+ GR+ +  +I+S   +I+   ER AIN+PIQG+A
Sbjct: 748 ERFSSVKGYLDHLKEECEKTGYAITLKGRKRYLADIHSTNRTIKANAERVAINSPIQGTA 807

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI++ K L+D KL +KM+LQ+HDEL+FEV E E+     I+   MEK     +
Sbjct: 808 ADIIKLAMINIQKVLDDKKLKSKMILQVHDELIFEVVESELEEMKTILKDGMEKV----V 863

Query: 957 NLRVPLKVNIKVSNNWQE 974
           +L VPL V++ V  NW +
Sbjct: 864 SLSVPLDVDMGVGVNWFD 881


>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
 gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
          Length = 878

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/992 (29%), Positives = 462/992 (46%), Gaps = 135/992 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  +++        +
Sbjct: 2   KKNKLLLIDGSSVAFRAFFALYNQIDRFKSPTGLHTNAIYGFNLMLDHMMKRIE----PT 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYKA R K P+    Q P +R    A G+   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELAQYEADD 117

Query: 120 IIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           II T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K G
Sbjct: 118 IIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEKMG 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I                                L    G+  + +   ++I +K   + +
Sbjct: 178 IT-------------------------PTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLL 212

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVAT 290
            E+                          I E+ +  +     + L   +    ++R   
Sbjct: 213 TEFGSL---------------------DGIYENIDSMKASKMKENLIADKEKAFLSRTLA 251

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T D  A    P+ + ++    +G  ++        +    F  L  Q    +S++     
Sbjct: 252 TIDTQA----PIEIGLDDIVYQGPKVDELGQFYDDM---GFKQLRAQLGTTSSQEEAVLD 304

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
           F    +                           L+      F+I+    +      + +A
Sbjct: 305 FQIVTEISP----------------------AMLKQDQFFYFEIL--GENYHREDLVGLA 340

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
               ++              +      DS             L+ F EN+      ++ K
Sbjct: 341 WGDKEKIY------------VGGPELLDSP-----------VLRDFLENQTIK--TYDFK 375

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRK 525
             K++L R  I++     D  L  Y+L S    + + +IA  +    L        K  K
Sbjct: 376 RGKVLLDRKEITLPPATFDSRLAKYLL-STVEDNSLTTIANLYGQTSLVPDEAIYGKGAK 434

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             +P  +I       H      V+++    +  KL   + L +   ++ P+ +V+++MEI
Sbjct: 435 LDLPEREI----FFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEI 490

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+++ + LK + +E    +  L + IY+L+G++FN++SPKQLG ILF ++  P     
Sbjct: 491 AGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGTILFEEMGLPLEYTK 550

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KT    +TA D+ +      P++  ILE+RQ++K++STY   L + I +  + +HT Y  
Sbjct: 551 KTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGK-IHTRYVQ 609

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S +PNLQNIP++ + G+ IR+AF+       L+++DYSQIELR+LAHI++ 
Sbjct: 610 DLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQD 669

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             L + F+   DIH   A  +FG+   E V+P  RR+AK +NF ++YGIS F L+  L I
Sbjct: 670 KHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGI 729

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EA  YI  YF RFPGI  Y+E      R  GYVETI+ RR    +INS   ++RN  
Sbjct: 730 TRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVRNFA 789

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN+PIQGSAADI + AMI++ K+L +  LAT+MLLQ+HDE+V EVP  E+ T   +
Sbjct: 790 ERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAM 849

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +  +ME A    I+L VPL  +    + W E 
Sbjct: 850 VKETMESA----ISLSVPLIADENEGSTWYEA 877


>gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
 gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
          Length = 961

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/1044 (27%), Positives = 486/1044 (46%), Gaps = 154/1044 (14%)

Query: 3   KENHLFLVDGSSFIYRAFYA-TPL-----------------LSRKHDGLPVNAIAGFCNM 44
           K N+L L+DGSS +   F+   P                  + +  DG   N + GF   
Sbjct: 2   KNNYLLLIDGSSLLSTQFFGSLPRQILFAKTIEEKEKYYDKILQTADGFYTNGVFGFVKY 61

Query: 45  LWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA 104
           L K+++  +     SH A+ +D    TFR EIYPDYK NR +    L  Q  + +   +A
Sbjct: 62  LLKIIREQK----PSHIAIAWDLSRDTFRREIYPDYKGNRVETMAPLSDQFAICQEVVKA 117

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-- 162
           FGI       FEADD   T     + E   V I++ D D +QLV     L+      +  
Sbjct: 118 FGIAQFMSGTFEADDFCGTLAEKFKSE-IPVFIMTKDNDYLQLVDDKIKLWLMHGTAEKT 176

Query: 163 ----------------------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIG 200
                                  D E + K++G+ PE +  L+ + GD+ DNI G+PG+G
Sbjct: 177 DELYKKYGIDKSKVNAPDRCFVYDKELIKKEFGVEPENVNSLKGIMGDASDNIKGVPGVG 236

Query: 201 YKTAALLLQEYGNLENILINA--------SRIKQKKRRENI-----------------LE 235
             TA LL+ +Y  ++ +              IK K  +E +                 L 
Sbjct: 237 EATARLLIGKYHTVDELYKAINNKDKKELDEIK-KAWKEELGINRSPLSYLLKTSDTELV 295

Query: 236 YAETARLSRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
             ++ARLS +L  ++ D+  T + L  L   + +       +KALEF             
Sbjct: 296 GEKSARLSEQLATIKKDIDTTGVELSDLTA-NIDFEGGAKIIKALEFNS----------- 343

Query: 295 DAANIEPVVLDINTTENKGIAIETEID--RDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                    +DI+  EN+  A +++++    +  K      +S+    + ++   +   +
Sbjct: 344 ---------VDISDLENEESAGKSDVNSLPYSLDKAVAEKLISENGINLINKLHEKAEAI 394

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           +  +K ++  I+ +        + +Q +           F I  + +            +
Sbjct: 395 KVTKKEAKPKISFERAETCDMEEALQCFKNISNNEKYVGFDINEEGL------------T 442

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            L    +T  K E    D  +  + D                      + + +  ++K  
Sbjct: 443 LLSGSKETFIKKEMFINDDFLKVNLDKLFNRCN---------------NTIFVTFSLKEK 487

Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
            +   +     +   D+ +  Y+++   + H+    A+  LS     +            
Sbjct: 488 LIFFKQT--YYKNVYDLAVAHYLINPLSTEHN----AEAVLSDYPDILSG---------- 531

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
                  E+    +   L     L  +L    + ++Y+ ++ P++  + +ME  GI++++
Sbjct: 532 -------ENPEFTARAALLSAPKLISELSNLGMENLYKEIEMPLVSTLYEMEERGIKLNK 584

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L + S E+   + + EE IY ++GE+FN++SPKQLG ILF KL+ P G KTKTG   +
Sbjct: 585 EELHEYSEELDVLIKNYEEEIYKMAGEEFNINSPKQLGVILFEKLRLPYGKKTKTGY--S 642

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T+ D+ +    ++PI++ +L +RQ++K+KSTY D L  ++ +   R+H   +   T TGR
Sbjct: 643 TSADVLERIRLEDPIVERVLNYRQVAKLKSTYTDGLEGYVKEDG-RIHCKLNQLVTATGR 701

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S EPNLQNIPI+ +LG++IR+AF+       + ADYSQIELRI+AH++    L + ++
Sbjct: 702 LSSTEPNLQNIPIRMELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQ 761

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIHR+ A+ +FGV +++V+   RR+AK +NF IIYGIS F L   L I R +A  YI
Sbjct: 762 GEEDIHRITASHVFGVPLDEVTDLQRRNAKAVNFGIIYGISSFGLGENLGISRKDAEKYI 821

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF  +P + +Y++       + G+V+T FGR     E+NS     R   ER A+N+P+
Sbjct: 822 NDYFKAYPQVKKYLDSLVETGIEKGFVKTYFGRIRPIPELNSNNFMKRQFGERIAMNSPV 881

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AM SV+  L+     +++LLQIHDEL+ E  EE+    ++++   M KA 
Sbjct: 882 QGTAADIIKIAMNSVNARLKSEFPDSRLLLQIHDELLIEAKEEDKEAVAKLLKEEMMKAA 941

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L+V L V++K   NW + +
Sbjct: 942 ----ELKVKLSVDVKFGYNWYDAH 961


>gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 641

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/616 (39%), Positives = 359/616 (58%), Gaps = 21/616 (3%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  I        W+ K++     +F   T ++D   ++ + ++ ST   K      V 
Sbjct: 42  REYDTIQTWAQFDAWLAKIDAAELTAFDTETTSLDPMVAQLVGLSFSTEPGK-AAYLPVA 100

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
               DL          +     ++L+ LK + E+    K+G ++KYD  VL  YGI + G
Sbjct: 101 HRGPDLP---------EQLPLDDVLARLKPWLESAERKKVGQHLKYDAQVLANYGIELNG 151

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541
              D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++ +Q  E+
Sbjct: 152 IEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEY 210

Query: 542 AIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID   L+  S 
Sbjct: 211 AAEDADITLQLHHALYPQVAREPGLQRVYREIEMPVSLVLRKMERTGVLIDDARLQAQST 270

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T  + L+++
Sbjct: 271 EIATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL 330

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D P+ K +LE R LSK+KSTY D LP  +N  T RVHT Y+ A  +TGRLAS +PNL
Sbjct: 331 -AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNL 389

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR 
Sbjct: 390 QNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRA 449

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+P
Sbjct: 450 TAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYP 509

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ +Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ 
Sbjct: 510 GVAQYMEDTRTVAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLI 569

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + +MI+V   L   KLA++M++Q+HDELV EVP++E++   + +   M         L+V
Sbjct: 570 KLSMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKV 625

Query: 961 PLKVNIKVSNNWQEEN 976
           PL   +    NW+E +
Sbjct: 626 PLVAEVGAGANWEEAH 641


>gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium glutamicum ATCC 13032]
          Length = 905

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/981 (27%), Positives = 450/981 (45%), Gaps = 108/981 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           + +  L L+DG S  +RAF+A P  +     G   NA+ GF +ML  LL++ +     +H
Sbjct: 20  KTDQTLMLIDGHSMAFRAFFALPAENFSTSGGQATNAVYGFLSMLSTLLKDEQ----PTH 75

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR +++P YKA R   P     Q+ +++      GI  IE   FEADD+
Sbjct: 76  VAVAFDVGRKTFRTDMFPAYKAQREATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDV 135

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT +  A+  GF   I++ D+D  QLV+ TT +   +K      +   E V +K+G+ P
Sbjct: 136 IATLSVAAKPLGFKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTP 195

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD                           + L N   + +K   + I +Y
Sbjct: 196 RQYPEFAALRGDPS-------------------------DNLPNIPGVGEKTATKWIAQY 230

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLI-LEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
                             +   L+H   ++   G  L   ++ +   + +  +    +  
Sbjct: 231 E----------------TLDNLLDHADEIKGKVGASLRERIEQVRMNRKLTEMVKDLELP 274

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               +  +  +   E      + E   +   +                      L + + 
Sbjct: 275 LGPDDFEMKPVQVAEVAAKFDDLEFGTNLRERV---------------------LAVVKA 313

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +  +      ++   +V+T+ + QW+        A          A  +  +AIA +   
Sbjct: 314 EGSAAPVEEVEAEQVVVDTQSLAQWLPARAGQALALALAGVAKPAAGDTYALAIADT--- 370

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  K   + +D++  +++D              L  +  +E   K+ H  K    +
Sbjct: 371 -------KRHAVLVDVADISAEDE-----------KALATWLASED-PKMLHGAKAAYHM 411

Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L   G  + G   D  + +Y+L  G+ ++++A + Q+ L              + +   +
Sbjct: 412 LAGRGFELHGVVHDTAIAAYLLRPGQRTYELADVYQRHLQRQLSTNDNGG--QLTLLDAA 469

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D Q     +++   IL+L   L  +L   +   +Y  L+ P+  ++++ME  GI +D   
Sbjct: 470 DDQ---SLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVAT 526

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           L++        +   EE   +L+ +   NLSSPKQL  +LF     P   KTKTG     
Sbjct: 527 LEEQLKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAA 586

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           A+         +P + ++L  RQ  K+K+T  + L   +     R+HT ++     TGRL
Sbjct: 587 AEIEALAIKNPHPFLDHLLAHRQYQKMKTTL-EGLIREVAPDG-RIHTTFNQTVASTGRL 644

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQNIP++T+ G+KIR  F+       L++ADYSQIE+R++AH+++   L + + 
Sbjct: 645 SSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYR 704

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H  V +++F V I+ V+P++RR  K +++ ++YG+S F L+ QL IP  EA   +
Sbjct: 705 EGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQQLSIPAGEAKQIM 764

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RF G+  Y+ +     R+ GY ET+FGRR +  E+ S     R   ERAA+NAPI
Sbjct: 765 ESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVARENAERAALNAPI 824

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI + AMI V +SL++  + +++LLQ+HDELV EV   E+    +I+   M+ A 
Sbjct: 825 QGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNA- 883

Query: 953 LPKINLRVPLKVNIKVSNNWQ 973
              I L VPL+V+     NW 
Sbjct: 884 ---IKLSVPLEVSAGDGVNWD 901


>gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
 gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
          Length = 867

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/977 (30%), Positives = 460/977 (47%), Gaps = 141/977 (14%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
              + + ++DG +  +R++YA   LS    G P NAI GF   L ++L     E      
Sbjct: 28  TNGHKIVIIDGHALAFRSYYAIRELSNSR-GEPTNAIYGFLRSLLRILAE---EGEFDAT 83

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD PA +FR+E +  YKA R   PE L  Q+ +++      G+  IE+ G EADD+I
Sbjct: 84  VVTFDAPAKSFRHEQFEGYKAGRRDTPEDLPEQIRIIKQLVDLLGLYRIEVPGLEADDLI 143

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T      ++G+ V I+++D+D  QLVS    +    K E+   + V +K+G+  ++ V 
Sbjct: 144 GTIAARCAEKGYTVEIVTSDRDAYQLVSDRVYVRGLAKAERFGPDEVFEKFGVRVDQWVD 203

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD+ DNIPG  G                         I  K   + + +Y     
Sbjct: 204 FRALTGDASDNIPGAKG-------------------------IGPKTAAKLLQDYGS--- 235

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGP--RLISFLKALEFTKLINRVATTYDCDAANI 299
                        +   LE+L          ++ + L+ ++F++ ++R+ T  D      
Sbjct: 236 -------------LDAILENLERVKPESAAKKVRASLEDVKFSRELSRIITDAD------ 276

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                         + +  E+      +  Q  +L +   ++      ++L L   Q  +
Sbjct: 277 --------------LTVTPEVW---AQREPQREALRELLERLEFGSIIRELGLTPAQGGA 319

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                  SY            ++ L   GS  F  +   +     +              
Sbjct: 320 PEAAARQSYRTAR--------LEDLFFGGSLGF--VLSDVSPMTGEL------------- 356

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                      L +  +          +  L  L+    +E  L    + K   +   R 
Sbjct: 357 -----------LELAVAAGGAVAEVPPERALELLR----SEEVL-HAADAKALAVYAQRC 400

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G+ +R  +D +LM+YVLD   +  D  ++ +++                P    +     
Sbjct: 401 GLEVRPGDDPLLMAYVLDPSAA--DPETLTRRY--------------GTPAWGATAVARA 444

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
               E S         LRPKL    L  +YE +++P+ +V++ ME+TG+++D   L   S
Sbjct: 445 VATAELSR-------TLRPKLAGA-LRRLYEEIERPVAEVLAHMEVTGVRLDTAALAAQS 496

Query: 600 AEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             +++ L +LE  + +L+G    NL+S  QL ++LF KL+  +G KT TG+  T    LE
Sbjct: 497 ESLAEKLAALEREVRELAGNPNLNLNSRDQLAELLFEKLELQAGRKTSTGKRSTAVSALE 556

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +    +P++  ILE+R+L+K+KSTY D LP  IN  T R+HT ++  +T TGRL+S  P
Sbjct: 557 PLK-DAHPVVPLILEYRELAKLKSTYLDPLPRLINPHTGRLHTTFNQTATATGRLSSANP 615

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T +G++IRRAF++     L+ ADYSQIELRILAHI     L + F    DIH
Sbjct: 616 NLQNIPVRTAVGREIRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRRGEDIH 675

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           R  AA+IFGV  E V+P+ RR AK INF ++YG+S  RLA +L IP +EA  +I+ YF  
Sbjct: 676 RRTAAQIFGVPPEAVTPEGRRVAKVINFGVLYGMSAHRLARELSIPYAEADAFIRSYFEG 735

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P +  YI++T  F R  GYVET+FGRR    +I S   + R   ER A N PIQG+ AD
Sbjct: 736 YPKVRAYIDETLAFARDKGYVETLFGRRRPIPDIRSSNRNAREYAERTAYNMPIQGTQAD 795

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ +   L+ H    K+LLQ+HDELV E PE      +  +   ME A      +
Sbjct: 796 IVKLAMVRLLPRLKAHG--AKLLLQVHDELVLEAPEGAAEAVAAEVKAVMEGA----FAM 849

Query: 959 RVPLKVNIKVSNNWQEE 975
           RVPL   +    NW E 
Sbjct: 850 RVPLVAEVGRGRNWLEA 866


>gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33]
 gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33]
 gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84]
 gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407]
 gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 05ZYH33]
 gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 98HAH33]
 gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84]
 gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407]
 gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1]
          Length = 878

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/992 (29%), Positives = 461/992 (46%), Gaps = 135/992 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           K+N L L+DGSS  +RAF+A        +  +GL  NAI GF  ML  +++        +
Sbjct: 2   KKNKLLLIDGSSVAFRAFFALYNQIDRFKNANGLHTNAIYGFNLMLDHMMKRIE----PT 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYKA R K P+    Q P +R    A G+   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELDQYEADD 117

Query: 120 IIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           II T   +AE+    F VTI+S DKDL+QL    T +  + K     E+    ++++K G
Sbjct: 118 IIGTLDKMAERTDIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEKMG 177

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I                                L    G+  + +   ++I +K   + +
Sbjct: 178 IS-------------------------PTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLL 212

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL---EFTKLINRVAT 290
            E+                          I E+ +  +     + L   +    ++R   
Sbjct: 213 TEFGSL---------------------DGIYENIDSMKASKMKENLIADKEKAFLSRTLA 251

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T D  A    P+ + ++    +G  ++        +    F  L  Q    +S++     
Sbjct: 252 TIDTQA----PIEIGLDDIVYQGPKVDELGQFYDDM---GFKQLRAQLGTTSSQEEAVLD 304

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
           F    +                           L+      F+I+    +      + +A
Sbjct: 305 FQIVTEISP----------------------AMLKQDQFFYFEIL--GENYHREDLVGLA 340

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
               ++              +      DS             L+ F E++      ++ K
Sbjct: 341 WGDKEKIY------------VGGPELLDSP-----------VLRDFLESQTIK--TYDFK 375

Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRK 525
             K++L R  I +     D  L  Y+L S    + + +IA  +    L        K  K
Sbjct: 376 RGKVLLDRKEIKLPPATFDSRLAKYLL-STVEDNSLTTIANLYGQTSLVPDEAVYGKGAK 434

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             +P  +I       H      V+++    +  KL   + L +   ++ P+ +V+++MEI
Sbjct: 435 LDLPEREI----FFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEI 490

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI+++ + LK + +E    +  L + IY+L+G++FN++SPKQLG ILF  +  P     
Sbjct: 491 AGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGTILFEDMGLPLEYTK 550

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KT    +TA D+ +      P++  ILE+RQ++K++STY   L + I +  + +HT Y  
Sbjct: 551 KTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGK-IHTRYVQ 609

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKI 764
             T TGRL+S +PNLQNIP++ + G+ IR+AF+       L+++DYSQIELR+LAHI++ 
Sbjct: 610 DLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQD 669

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
             L + F+   DIH   A  +FG+   + V+P  RR+AK +NF ++YGIS F L+  L I
Sbjct: 670 QHLIEAFQQGADIHTSTAMRVFGIEKAEYVTPNDRRNAKAVNFGVVYGISDFGLSNNLGI 729

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EA  YI  YF RFPGI  Y+E      R  GYVETI+ RR    +INS   ++RN  
Sbjct: 730 TRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVRNFA 789

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER AIN+PIQGSAADI + AMI++ K+L +  LAT+MLLQ+HDE+V EVP  E+ T   +
Sbjct: 790 ERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAM 849

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +  +ME A    I+L VPL  +    + W E 
Sbjct: 850 VKETMESA----ISLSVPLIADENEGSTWYEA 877


>gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 911

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/1001 (28%), Positives = 475/1001 (47%), Gaps = 123/1001 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +  + +VDG+S I+RAFYAT       L +   G+  NA   F NML  ++         
Sbjct: 2   KTKILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAAYSFINMLLSVIHQRGPY--- 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            H  + FD    TFR+++  DYKANR K P  L+ Q  +VR       I   E +  EAD
Sbjct: 59  DHILIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEAD 118

Query: 119 DIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DI+ +    AEK+       I+S+DKD+ QL++      + ++     E++D   + +KW
Sbjct: 119 DIVGSICKYAEKQFDNLQAEILSSDKDMYQLITNKVICLNPIQGVNELEEVDTNKLFEKW 178

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            I P ++   +A+ GDS DN+ G+ GIG K A  L+Q+Y NLENI  N  +IK    +  
Sbjct: 179 QILPNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYQNLENIYNNLEQIKGA-IKTK 237

Query: 233 ILEYAETARLSRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           + +  + A L + L  ++TDV +     + L   D N   +  FL   E   L  R    
Sbjct: 238 LEQDKKMAFLCKDLATIKTDVTLENFSFKKL---DFNVDNIYEFLNKYEMYSLKKRFTNI 294

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +          LD N  +NK                                   Q L 
Sbjct: 295 LN----------LDFNPYQNKK----------------------------------QNLD 310

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           ++ +   S+   ++ +Y  + + ++                       D    K I I I
Sbjct: 311 VKIINSWSKDYEDSINYLYVESLEE-----------------------DYHKDKIIGIGI 347

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S               ++D      Q S  ++T      S  ++F  N +  K  ++IK 
Sbjct: 348 SNNKGN---------FYLDFKNKAQQLSFFEDTTLSSTNSLFEEFLNNPNLKKYTYDIKK 398

Query: 472 DKLVLHRYGISM--RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSR 524
              +L  +  ++    F+ D M+  Y L++   S D++S  +   +        EI    
Sbjct: 399 TTYLLKNHKYNVLASNFDFDFMVACYSLNANVVS-DLSSQIKLVDNLVELETIDEIFGKG 457

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
               P   I      ++  + + ++ +    L  +L       +Y ++D P+I+V+  +E
Sbjct: 458 VKKNP--DIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIE 515

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFP 640
           + GI ID++ LK  + +I K +  +E  +  L  E+    FN SSPKQ+ ++LF KLK P
Sbjct: 516 VQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLP 575

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +  K       TT++++ +     +PII  +LE R+ +K+ +TY       I    + VH
Sbjct: 576 NLEK------GTTSKEVLEKLITYHPIINLLLEHRKYTKLYTTYLKGFEKFIFDDNK-VH 628

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T ++   T TGRL+S  PN+QNI I+ +  +++R+ FI+   K  +S DYSQIELR+LA 
Sbjct: 629 TIFNHTLTNTGRLSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQ 688

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++K T L   F  + DIH   A  IF ++ ++++ + RR AK  NF I+YG++ F LA+ 
Sbjct: 689 MSKETNLINAFNQNADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASD 748

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I  ++A   IK Y+  FP + ++ EK        GY+ T+  RR + +E+NS   +IR
Sbjct: 749 LNISVNQAKQMIKDYYSAFPSLLDFKEKQVEIATSQGYITTLSNRRRYINELNSTNHNIR 808

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              +R A+N PIQG+A+DI + AMIS++K L++  L  +++ QIHDE++ EV + ++   
Sbjct: 809 QFGKRIAVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQT 868

Query: 941 SQIIVHSMEKA---CLPKINLR----VPLKVNIKVSNNWQE 974
            +I+VH +E A       +NL+    V LKV   V   W +
Sbjct: 869 KKIVVHELENALEKLFLDLNLKEQVVVKLKVGESVGKTWFD 909


>gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
 gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
          Length = 1046

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1058 (28%), Positives = 498/1058 (47%), Gaps = 105/1058 (9%)

Query: 5    NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
                ++D S+ +YR+ +A  +  R   G+   A  GF N L  +++  R + + +   V 
Sbjct: 2    KRAVILDTSAIMYRSHFAL-MGMRNSSGMSTGATFGFINTLESVIREFRPDYLVACLDVK 60

Query: 65   FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
             D    T   E    YKA+R  +PE L+ Q+  +      + IP  +  G EADD+IAT+
Sbjct: 61   RDELERTGELET---YKAHRESMPEELVMQIDTIMKVLDGYRIPKYKKAGQEADDVIATF 117

Query: 125  TYIA---EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWGI 174
                     E   V +I+ DKDL QLV     +    K +K          E V++  G+
Sbjct: 118  ATKFSNDADEQIEVFVITGDKDLTQLVDGKINIALLGKGDKNSAFKHIKTDEDVVEYLGV 177

Query: 175  PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             P+K+  L  L GD  D IPG+ GIG K    L+  YGNLE I  N   IK  K++E +L
Sbjct: 178  TPDKIPDLFGLMGDKSDGIPGVAGIGPKNGVKLITTYGNLEGIYENIDEIKG-KQKEKLL 236

Query: 235  EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL------------------ 276
               E A +SR+L  ++ ++ +      L  E+ +   L+                     
Sbjct: 237  TDKENAFISRELATVKRELDVEYDKNKLKFEEKDFDSLLKLYEELNFKRFSKAVEEEKER 296

Query: 277  -------KALEFTKLI-----------NRVATTYDCDAANIEPVVLDINTTENKGIA--- 315
                   K L   + +                 ++ +    + +  D       GI+   
Sbjct: 297  FLQNGNQKELTEEEKLVLEKNKKITEEKLEKERFEREKIEKQELEYDKENPIFDGISHFY 356

Query: 316  --IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373
              +E E + +   K  +   L ++ + I  E   +K     L+             K+  
Sbjct: 357  EHVEYEHNSEIDKKIDEIQVLKEELA-IEYEAQKKKQEEIALENQKTEKTKKIKDEKVYF 415

Query: 374  TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD-----------------Q 416
             K+  + V   +           D   A     + ++I                      
Sbjct: 416  EKNYGKVVSWNDAYSVIE---KMDKKVAIFENMLGLSICDEKMNIVLLDSELKNILQNKN 472

Query: 417  KDDTSFKVETIFIDLSVHTSQ--------DSTGKNTLTKEILSY-LKKFFENEHFLKIGH 467
             + +  +V+     L  +T++        ++  K    KEI++Y +K++ ++      G+
Sbjct: 473  YEKSGAEVQINLFSLGENTAEKEDNKKNIENIYKLLSEKEIIAYNVKEYMKSGESEYFGY 532

Query: 468  NI--KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK 522
            ++  K   +   R+GI    + DI+L  YVL    S  +I  I          T +E  K
Sbjct: 533  SVGGKTYGINEERFGIKCTEYFDILLARYVL-GTESLQEIEEIILDEFGVEIATFEEQFK 591

Query: 523  SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
              +       +SD  V E   + +  I +L ++ R +L  E+ L+++++L+  +I V++Q
Sbjct: 592  KERRKKDFSDVSDDVVCEFLSKRTFFIYKLEIIFRNRLQNEQFLNIFDKLESRLIPVLAQ 651

Query: 583  MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
            ME TGI+ID+    +   E+ + +  L+ +IY L+  +FN+ SP+QLG++LF KL+ PSG
Sbjct: 652  MEETGIKIDKKYFSEFQNELEEKINMLQSDIYKLADGEFNIDSPQQLGEVLFEKLQIPSG 711

Query: 643  AKTKTGQWKTTAQDLE------QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
             KTKTG + T  + LE      ++      I K +LE+R   K+ STY + +P   +K  
Sbjct: 712  KKTKTG-YSTNVEVLEMIANNRELTEDKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKE- 769

Query: 697  QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            +R+HT ++   T TGRL+S  PNLQNIP++TD G +IR  F+S     LIS DYSQIELR
Sbjct: 770  ERIHTTFNQNGTSTGRLSSANPNLQNIPVRTDDGIRIRTGFVSKEGHSLISFDYSQIELR 829

Query: 757  ILAHIAKITPLYQVFENSLDIHRMVAAEIF-GVNIEKVSPQMRRHAKTINFSIIYGISPF 815
            +LA ++K   L Q ++++ D+H + A +IF     +++S   R  AK INFSI+YG +PF
Sbjct: 830  VLAELSKDRHLVQAYQDNQDLHNLTARKIFFKTEEDEISRHERSIAKVINFSILYGKTPF 889

Query: 816  RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
             L+ +L I   EA+ YI  YF  +P + ++++      + +G+VET +G R +   IN+ 
Sbjct: 890  GLSKELGITVQEASQYITTYFEEYPRVRKFLDIVTETAKLHGFVETFYGTRRYISGINAT 949

Query: 876  KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
              +++    R A+N  +QG+AA+I ++ MI +H+  ++ +   KMLLQ+HDEL+FEV +E
Sbjct: 950  NKNVQAQAVRMAVNTVVQGTAANIIKKVMIELHEEFKNDE-NIKMLLQVHDELIFEVRDE 1008

Query: 936  EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                  + I   ME     K   +VPLK N  V+ NW 
Sbjct: 1009 FAKEYMEKIEKIMENTVKFK---KVPLKANGSVAKNWG 1043


>gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4]
          Length = 877

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/974 (28%), Positives = 467/974 (47%), Gaps = 104/974 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG S + RAFY  P L+   +GL  NA+ GF N+L+K+L   +    A + AV F
Sbjct: 3   KLVLIDGHSILNRAFYGVPNLTN-SEGLHTNAVYGFLNILFKVLDEEK----ADYLAVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++++  YK  R  +PE L  Q+PL++    A G+P +  +G+EADDI+ T  
Sbjct: 58  DLKAPTFRHKMFDAYKGTRKPMPEELHEQVPLMKEVLTAMGVPILTKEGYEADDILGTIA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
              +K+G+ VTI+S D+DL+QL      +             V   +  P + +   Q  
Sbjct: 118 KREQKDGYEVTILSGDRDLLQLSDTHIRICLPKTSRGTT--EVHNYY--PEDVIREYQ-- 171

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
                        +  +    +    G+  + +     I +K     I++Y         
Sbjct: 172 -------------VTPEQFIEVKALMGDQSDNIPGVPSIGEKTATNLIVQYQ-------- 210

Query: 246 LVMLRTDVPITIPLEHL--ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                        LE++   L++   PR    L+       ++        DA       
Sbjct: 211 ------------NLENIYTHLDEVKPPRAKKALEEHRDLAELSLKLARICVDAP------ 252

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           ++ +  + K   + T    +   +    S  +     I +E  P+K              
Sbjct: 253 IEFSMADAKLENLYTPEAYEYMKRLEFKSIAARFGEGIRNESGPEK-------------- 298

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               +  + +  +     +K +       +++ +     +    A+A+S  +    +   
Sbjct: 299 ---QFVLVEDFSEADALFEKAKKEERIGMELLAE-----NGSVTALALSFEE--TGSYIF 348

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
           +   F+  S    +      T    +L  LK            H++ + KL    YG ++
Sbjct: 349 LVGGFMTESYIAGKYEELCRTGHAWVLD-LK------------HSLPFAKL---SYGDTV 392

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEILKSRKSSIPIDKISDSQVQEH 541
               D  + +Y+L+  + ++    IA+  L  T   K  L  + S               
Sbjct: 393 ---YDAGVAAYLLNPLKDTYGYDDIARDVLGMTVPSKTDLIKKMSYKDACAKEQDNFTRM 449

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A   +         L  +L  E +  +Y  ++ P+I  +  ME  GI + ++ L     +
Sbjct: 450 AGLMAYTAFAAGKPLSERLAAEGMEDLYRNIELPLIYTLFHMEDEGIAVRREELTAYGGK 509

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + K +  LE+ I++++G++FN++SPKQLG+ILF K++   G KTKTG   +TA D+ +  
Sbjct: 510 LKKQIAVLEKEIWEMTGQEFNINSPKQLGEILFEKMQIKGGKKTKTGY--STAADVLEKL 567

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P+I+ IL++RQ +K+ STYAD L  +I +   R+H+ ++   T TGR++S EPNLQ
Sbjct: 568 APDYPVIQKILDYRQYTKLNSTYADGLGTYIKEDG-RIHSRFNQTITATGRISSTEPNLQ 626

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+ +LG++IR+ F+       + ADYSQIELR+LAH++    L + ++ + DIH + 
Sbjct: 627 NIPIRMELGREIRKVFVPRNGFLFLDADYSQIELRVLAHMSGDERLIEAYKTAQDIHAIT 686

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+++F + + +V+P  RR+AK +NF I+YGIS F L+  L I R EA +YI+RYF  +P 
Sbjct: 687 ASQVFHIPLNEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEAMEYIERYFETYPQ 746

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  +++      ++ GYV T+FGRR    E+ S     R+  ER A+N+PIQG+AADI +
Sbjct: 747 VKSFLDSLVAHAKEQGYVTTMFGRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIK 806

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V + L    L ++++LQ+HDEL+ E  E+E  T  +I+   M  A     +L+V 
Sbjct: 807 IAMIRVDERLRRENLRSRLILQVHDELLIETAEDEKETVMKILSEEMHHAA----SLKVE 862

Query: 962 LKVNIKVSNNWQEE 975
           L++++    NW E 
Sbjct: 863 LEIDMHGGKNWFEA 876


>gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B']
          Length = 865

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/977 (29%), Positives = 470/977 (48%), Gaps = 127/977 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + LVDG S  YRAFY  PLLS K +G+  NAI GF  +L+ LL   + ++     AV F
Sbjct: 2   KIMLVDGFSIAYRAFYGMPLLSTK-EGIFTNAIYGFLKILFNLLDTHQPDA----LAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+ A TFR++    YKA R  +P  L PQ+PL++    A GI  I   GFEADDI+ T  
Sbjct: 57  DFAAPTFRHQYALTYKATRKPMPSELQPQIPLLQDLLSAMGISHISAPGFEADDILGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
             A      V I+S D+DL+Q+ + +  +     +      E      V+ K+G+ P ++
Sbjct: 117 TAAAAAKHDVLIVSGDRDLLQIATDSIQIXIPKTKQTGTEIESYYAADVVAKYGVIPTEL 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+ G                         + +K   + I EY   
Sbjct: 177 IDVKALMGDASDNIPGVKG-------------------------VGEKTALKLIAEYK-- 209

Query: 240 ARLSRKLVMLRTDVPITIPLEHLI--LEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                              ++ L   LE+  G +L   L   + +   ++   T   D  
Sbjct: 210 ------------------NIDTLYANLENIKGAKLKENLATYKDSAYDSKFLATIKIDI- 250

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P+   +     K   +E  +      +  +F SL  + S I                
Sbjct: 251 ---PINFTLQDFSFK---LEDNLAVRELFEKLEFKSLLTKFSAI---------------- 288

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +   ++  S   +  T      +  L+T    +  +  DT+                  
Sbjct: 289 PAAPQVDVASIVTVSTTSV----LADLDTAAVFAV-LENDTL------------------ 325

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                     ++ ++  ++      N   +  +  +K FFE ++  KI HN K  + +L+
Sbjct: 326 ----------YMGVADGSNCYFIAANLAQEYDIIAVKNFFEAKNISKILHNSKDLRHILY 375

Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           RY I++ G   D  + SY+++  +S ++++  A  +      ++L + K+ I    ++  
Sbjct: 376 RYQINIHGNIFDTAIASYLINPLQSDYELSVAATGYDIKHVDQLLGTGKNKITWASLASX 435

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            +       ++ +  L      +L    +L ++  ++ P+I+V+  MEI GI +D   L 
Sbjct: 436 IIVAQLGARASAMWTLQTAQLKELTDASMLDLFYDIEMPLIEVLFDMEIAGITVDAAFLT 495

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
               ++   + +LE++IY L+ EKFN+SS KQLG ILF KL  P+G KTKTG   +TA +
Sbjct: 496 AFGKKLDALIATLEQDIYSLADEKFNISSSKQLGLILFDKLGIPAGKKTKTGY--STAAN 553

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           +         I+  +LE+RQ  K+ STY   L   ++K  +   TF +   T TGR++S 
Sbjct: 554 ILDKLKDKYVIVAKVLEYRQYKKLHSTYVVGLLKLLDKNNKLHSTF-NQTVTATGRISSA 612

Query: 717 EPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           EPNLQNIPI+  LG++IRRAFI        + ADYSQIELR+LA ++    + + F   +
Sbjct: 613 EPNLQNIPIRLALGKEIRRAFIPSNDDYVFLDADYSQIELRVLASLSADANMQRAFLEGI 672

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A+E+FGV+   V+   R  AK +NF ++YGIS F LA  +++   EA +YI+ Y
Sbjct: 673 DIHTSTASEVFGVDT--VTQAQRNAAKAVNFGVVYGISAFSLADDIQVSNQEATEYIENY 730

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F ++P +  Y++      +  GY  T+  R+ +  E+ S   + +   +R A+N PIQG+
Sbjct: 731 FAKYPNVKHYLDSLITTSQATGYGVTLLNRKRNIVELFSSNFNTKEYGKRIAMNMPIQGT 790

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI ++AMI VH +L+     + ++L +HDEL+ EV + EI   ++++   ME A    
Sbjct: 791 AADIIKKAMIQVHNALK--GTRSTLILTVHDELLLEVHKSEIEHITKLLKTEMESA---- 844

Query: 956 INLRVPLKVNIKVSNNW 972
           + L VPL V++K   +W
Sbjct: 845 VKLAVPLLVDVKSGXSW 861


>gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
 gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
          Length = 918

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/984 (28%), Positives = 472/984 (47%), Gaps = 84/984 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               ++DG+S  +RA+YA    +   DG+  NAI GF +ML+K + +   +    + AV 
Sbjct: 4   KRAIIIDGNSLFFRAYYAIKA-NMSADGMATNAIYGFLSMLYKSINDFSPD----YIAVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E + DYKANR K  + LL Q+P+++    A  I  ++ + FE DDII ++
Sbjct: 59  FDLGGKTFRHEKFDDYKANRRKTDDELLMQIPVIKEILAAMNIKILQKKAFEGDDIIGSF 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
               E +   V IIS DKD+ QL+S  T +  T +     +  DI+    ++   P+  +
Sbjct: 119 ARFVESDDVEVIIISGDKDMFQLISDNTKIAYTKRGISNIDIYDIQKFEDEYNFAPKHFI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +A+ GDS DN  G+ GIG K A  L+ +Y  +ENI  N   I  K  +  +      A
Sbjct: 179 DYKAIMGDSSDNYKGVKGIGDKGARNLVTKYQTIENIYQNIDEISGKT-KLALENSKMQA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            + ++L  +  ++ + + L+ + L D +   L S  K  +    + ++ T    +  N  
Sbjct: 238 FMGKELATIIVNLDLGLTLDDVKLVDPDFDTLASIYKNYKLNTFLKKLETNGCVNGTN-- 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
               D  T E KG+          +++ +   +       IN         +++ +  + 
Sbjct: 296 ----DDETDELKGMLSIDVSRDVGSLEATLKKADVADLCLINDSN-----HIDKPEIYAA 346

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGS---------ASFKIITDTMDAFHS-KPIAIA 410
           Y   + +   + +   I + +  +              A F ++ + +  F     + +A
Sbjct: 347 YFNVDGNIWLLDDMAQIHRVLDIVAEEKVKVVGYDLKNALFALLQNGLPLFTPFFDVMLA 406

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
              ++ K          ++D      +D  G +   K + +  KK    +   +   NI 
Sbjct: 407 YEVINNKGK--------YMDF-YKILEDQLGIDVSDKLLKAKRKKTLTADDIKERYANIC 457

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
                                        ++++D+ + A           L   +SS   
Sbjct: 458 KSLK-------------------------KTNNDVVNAA-----------LGDVESSDEN 481

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            +I       + +E  N I +++  L+ ++  + L  V+  ++ P+++V++ ME TG+ +
Sbjct: 482 ARIGHEDALLYLLETVN-IFKVYDKLKSQIEEDDLQKVFYEIEMPLVEVIASMENTGVWL 540

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D + LK   AE+S     L + IY+L+G +FN++SPKQLG++LF KL      KTK G +
Sbjct: 541 DTEFLKTYEAELSNIEAELLDKIYELAGFEFNVNSPKQLGEVLFEKLNLEPKVKTKRG-Y 599

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T A+ L+++    +PII  ILE+R++SK+ STY             +V   +      T
Sbjct: 600 STNAEVLQKLRKT-HPIIDLILEFRKVSKLNSTYVRGFMGF-KGTDGKVRPEFLQIGAST 657

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR+A + P LQ IP+KTD+G++IR+AF +   +  +SADYSQIELRIL H++    L   
Sbjct: 658 GRMACINPALQTIPVKTDMGKRIRKAFKAGKDRVFVSADYSQIELRILGHVSCDEGLINA 717

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F++  DIH  VA  + G     VS  +R  AK INF +IYG+S F L+ +L I R +A  
Sbjct: 718 FKSGEDIHEAVAVNVLGAQKGAVSKAVRSKAKAINFGVIYGMSDFGLSNELEISRKDAKK 777

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF +   ++EY+E  K+  +Q G V T  GR     EIN+    +RN+ ER A+N+
Sbjct: 778 YIDEYFAKHRAVYEYMEAQKSIAKQTGAVRTETGRIRKIPEINAQNIMVRNLGERLAMNS 837

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQG  ADI + AM +V+++++   L  K++LQIHDELV +    +     +++   ME 
Sbjct: 838 PIQGMGADIMKLAMNNVYRAIQKQGLDAKIVLQIHDELVIDASVSDGEKVKKLLKDEMEA 897

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A     NL+  L  N +   N  +
Sbjct: 898 A----YNLKTGLIANPQSGENLYD 917


>gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 607

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/609 (40%), Positives = 378/609 (62%), Gaps = 7/609 (1%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I   + +  W+  +   G  +F   T ++D   ++ + ++++ +  +         +   
Sbjct: 3   INTPEMLADWIDAIRAQGYVAFDTETTSLDEMQAELVGVSLALVPGRAAYIPLGHRMAAG 62

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490
             +      T      + +L+ L+   E+   LKIG NIKYD  ++ RYG+ +   +D M
Sbjct: 63  DDLFADNRLTEGQLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARYGVHLAPVDDTM 122

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           L+SY L +G  +H +  +++++L++     KE++ S KS++  D +   +   +A E+++
Sbjct: 123 LLSYALHAGLHNHGMDELSERYLNHRPIPIKELIGSGKSAVTFDHVPVEKAVAYAAEDAD 182

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           + L+LW   +P+L   ++  VYE L++P+I V+++ME+ G+Q+D+D L ++S   ++ ++
Sbjct: 183 ITLRLWQHFKPQLPQSRVTTVYETLERPLIPVLTRMEMAGVQVDRDTLSRMSNAFAQKMV 242

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            LEE I+  +G  FN+ SPKQLG+ILF ++ F  G K K G W T A  LE +   ++ +
Sbjct: 243 QLEEEIHAAAGRSFNVGSPKQLGEILFDEMGFQGGVKGKNGAWGTGADVLEDL-ATEHAL 301

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
              IL+WRQ++K+KSTY D+L +HIN  + RVHT YS+A   TGRLAS +PNLQNIP++T
Sbjct: 302 PGLILDWRQVAKLKSTYTDALQDHINPDSGRVHTSYSIAGANTGRLASTDPNLQNIPVRT 361

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           + G++IR AF++P  K L+S DYSQIELRILA IA+I  L + F+  LDIH   A+E+F 
Sbjct: 362 EEGRRIRGAFVAPAGKVLVSLDYSQIELRILAQIAQIDALKEAFQQGLDIHAATASEMFN 421

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V +++++P++RR AK INF +IYGIS F LA  LRIPR  A  +I RYF RFPGI  Y++
Sbjct: 422 VPLDQMTPEIRRQAKAINFGVIYGISAFGLARNLRIPRDRAQGFIDRYFERFPGIRAYMD 481

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           +T  F ++NG+V T+FGRRI+  EIN+ K        RAAINAPIQG+AADI RRAMI +
Sbjct: 482 QTIAFAKENGHVRTLFGRRINTPEINA-KGPHAGFARRAAINAPIQGTAADIIRRAMIQM 540

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
             ++    L  +MLLQ+HDEL+FEV E      + I    ME A  P ++L + L V+  
Sbjct: 541 DPAI--AHLPARMLLQVHDELLFEVEENAADELTAIAKRIMEGAADPAVHLDIKLVVDAG 598

Query: 968 VSNNWQEEN 976
              NW E +
Sbjct: 599 RGQNWAEAH 607


>gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 911

 Score =  639 bits (1647), Expect = e-180,   Method: Composition-based stats.
 Identities = 288/1001 (28%), Positives = 474/1001 (47%), Gaps = 123/1001 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +  + +VDG+S I+RAFYAT       L +   G+  NA+  F NML  ++         
Sbjct: 2   KTKILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIHQRGPY--- 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            H  + FD    TFR+++  DYKANR K P  L+ Q  +VR       I   E +  EAD
Sbjct: 59  DHILIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSVVREFLTKANIQWFEQENIEAD 118

Query: 119 DIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DI+ +    AEK+       I+S+DKD+ QL++      + V+     E++D   + +KW
Sbjct: 119 DIVGSICKYAEKQFDNLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEVDTNKLFEKW 178

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            I P ++   +A+ GDS DN+ G+ GIG K A  L+Q+Y NLENI  N  +IK    +  
Sbjct: 179 QILPNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYQNLENIYNNLEQIKGA-IKTK 237

Query: 233 ILEYAETARLSRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           + +  + A L + L  ++TDV +     + L   D N   +  FL   E   L  R    
Sbjct: 238 LEQDKKMAFLCKDLATIKTDVILENFSFKKL---DFNVDNIYEFLNKYEMYSLKKRFTNI 294

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +          LD N  +NK                                   Q L 
Sbjct: 295 LN----------LDFNPYQNKK----------------------------------QNLD 310

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           ++ +   S+   ++ +Y  + + ++                       D    K I I I
Sbjct: 311 VKIINSWSKDYEDSINYLYVESLEE-----------------------DYHKDKIIGIGI 347

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S               ++D      Q S  ++T      S  ++F  N +  K  ++IK 
Sbjct: 348 SNNKGN---------FYLDFKNKAQQLSFFEDTTLSSTDSLFEEFLNNSNLKKYTYDIKK 398

Query: 472 DKLVLHRYGISM--RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSR 524
              +L  +  ++    F+ D M+  Y L++   S D+++  +   +    E    I    
Sbjct: 399 TTYLLKNHKYNVLASNFDFDFMVACYSLNANVVS-DLSNQIKLVDNLIELETIDQIFGKG 457

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
               P   I      ++  + + ++ +    L  +L       +Y ++D P+I+V+  +E
Sbjct: 458 VKKNP--DIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIE 515

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFP 640
           + GI ID++ LK  + +I K +  +E  +  L  E+    FN SSPKQ+ ++LF KLK P
Sbjct: 516 VQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLP 575

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +  K       TT++++ +     +PII  +LE R+ +K+ +TY       I   ++ VH
Sbjct: 576 NLEK------GTTSKEVLEKLITYHPIINLLLEHRKYTKLYTTYLKGFEKFIFDDSK-VH 628

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           T ++   T TGRL+S  PN+QNI I+ +  +++R+ FI+   K  +S DYSQIELR+LA 
Sbjct: 629 TIFNHTLTNTGRLSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQ 688

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++K T L   F  + DIH   A  IF ++ ++++ + RR AK  NF I+YG++ F LA+ 
Sbjct: 689 MSKETNLINAFNQNADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASD 748

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I  ++A   IK Y+  FP + E+ EK        GY+ T+  RR + +E+NS   +IR
Sbjct: 749 LNISVNQAKQMIKDYYSAFPSLLEFKEKQVEIATSQGYITTLSNRRRYINELNSTNHNIR 808

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              +R A+N PIQG+A+DI + AMIS++K L++  L  +++ QIHDE++ EV + ++   
Sbjct: 809 QFGKRIAVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQT 868

Query: 941 SQIIVHSMEKACLPKI-NLR------VPLKVNIKVSNNWQE 974
            +I+V  +E A      +L       V LKV   V   W +
Sbjct: 869 KRIVVSELENALEKLFLDLNIKEQVVVKLKVGESVGKTWFD 909


>gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032]
          Length = 880

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 264/975 (27%), Positives = 447/975 (45%), Gaps = 108/975 (11%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  +RAF+A P  +     G   NA+ GF +ML  LL++ +     +H AV FD
Sbjct: 1   MLIDGHSMAFRAFFALPAENFSTSGGQATNAVYGFLSMLSTLLKDEQ----PTHVAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR +++P YKA R   P     Q+ +++      GI  IE   FEADD+IAT + 
Sbjct: 57  VGRKTFRTDMFPAYKAQREATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDVIATLSV 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            A+  GF   I++ D+D  QLV+ TT +   +K      +   E V +K+G+ P +    
Sbjct: 117 AAKPLGFKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTPRQYPEF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD                           + L N   + +K   + I +Y      
Sbjct: 177 AALRGDPS-------------------------DNLPNIPGVGEKTATKWIAQYE----- 206

Query: 243 SRKLVMLRTDVPITIPLEHLI-LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                       +   L+H   ++   G  L   ++ +   + +  +    +      + 
Sbjct: 207 -----------TLDNLLDHADEIKGKVGASLRERIEQVRMNRKLTEMVKDLELPLGPDDF 255

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            +  +   E      + E   +   +                      L + + +  +  
Sbjct: 256 EMKPVQVAEVAAKFDDLEFGTNLRERV---------------------LAVVKAEGSAAP 294

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
               ++   +V+T+ + QW+        A          A  +  +AIA +         
Sbjct: 295 VEEVEAEQVVVDTQSLAQWLPARAGQALALALAGVAKPAAGDTYALAIADT--------- 345

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
            K   + +D++  +++D              L  +  +E   K+ H  K    +L   G 
Sbjct: 346 -KRHAVLVDVADISAEDE-----------KALATWLASED-PKMLHGAKAAYHMLAGRGF 392

Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + G   D  + +Y+L  G+ ++++A + Q+ L              + +   +D Q   
Sbjct: 393 ELHGVVHDTAIAAYLLRPGQRTYELADVYQRHLQRQLSTNDNGG--QLTLLDAADDQ--- 447

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             +++   IL+L   L  +L   +   +Y  L+ P+  ++++ME  GI +D   L++   
Sbjct: 448 SLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLK 507

Query: 601 EISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
                +   EE   +L+ +   NLSSPKQL  +LF     P   KTKTG     A+    
Sbjct: 508 TFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEAL 567

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                +P + ++L  RQ  K+K+T  + L   +     R+HT ++     TGRL+S +PN
Sbjct: 568 AIKNPHPFLDHLLAHRQYQKMKTTL-EGLIREVAPDG-RIHTTFNQTVASTGRLSSTDPN 625

Query: 720 LQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++T+ G+KIR  F+       L++ADYSQIE+R++AH+++   L + +    D+H
Sbjct: 626 LQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 685

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             V +++F V I+ V+P++RR  K +++ ++YG+S F L+ QL IP  EA   ++ YF R
Sbjct: 686 NYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQQLSIPAGEAKQIMESYFER 745

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F G+  Y+ +     R+ GY ET+FGRR +  E+ S     R   ERAA+NAPIQG+AAD
Sbjct: 746 FGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVARENAERAALNAPIQGTAAD 805

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI V +SL++  + +++LLQ+HDELV EV   E+    +I+   M+ A    I L
Sbjct: 806 IIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNA----IKL 861

Query: 959 RVPLKVNIKVSNNWQ 973
            VPL+V+     NW 
Sbjct: 862 SVPLEVSAGDGVNWD 876


>gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 911

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 288/1000 (28%), Positives = 469/1000 (46%), Gaps = 121/1000 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +  + +VDG+S I+RAFYAT       L +   G+  NA+  F NML  ++         
Sbjct: 2   KTKILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIHQRGPY--- 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            H  + FD    TFR+++  DYKANR K P  L+ Q  +VR       I   E +  EAD
Sbjct: 59  DHILIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEAD 118

Query: 119 DIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DI  +    AEK+       I+S+DKD+ QL++      + V+     E++D   + +KW
Sbjct: 119 DIAGSICKYAEKQFDNLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEVDTNKLFEKW 178

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            I P ++   +A+ GDS DN+ G+ GIG K A  L+Q+Y NLENI  N  +IK    +  
Sbjct: 179 QILPNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYQNLENIYNNLEQIKGA-IKTK 237

Query: 233 ILEYAETARLSRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           + +  + A L + L  ++TDV +     + L   D N   +  FL   E   L  R    
Sbjct: 238 LEQDKKMAFLCKDLATIKTDVTLENFSFKKL---DFNVDNIYEFLNKYEMYSLKKRFTNI 294

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +          LD N  +NK                                   Q L 
Sbjct: 295 LN----------LDFNPYQNKK----------------------------------QNLD 310

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           +  +   S+   ++ +Y  + + ++                       D    K I I I
Sbjct: 311 VRIINSWSKDYEDSINYLYVESLEE-----------------------DYHKDKIIGIGI 347

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S               ++D      Q S  ++T      S  ++F  N +  K  ++IK 
Sbjct: 348 SNNKGN---------FYLDFKNKAQQLSFFEDTTLSSTDSLFEEFLNNSNLKKYTYDIKK 398

Query: 472 DKLVLHRYGISM--RGFE-DIMLMSYVLDSG---RSSHDIASIAQKWLSYTRKEILKSRK 525
              +L  +  ++    F+ D M+  Y L++      S+ I  +       T  EI     
Sbjct: 399 TTYLLKNHKYNVLASNFDFDFMVACYSLNANVVSDLSNQIKLVDNLIELETIDEIFGKGV 458

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
              P   I      ++  + + ++ +    L  +L       +Y ++D P+I+V+  +E+
Sbjct: 459 KKNP--DIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEV 516

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPS 641
            GI ID++ LK  + +I K +  +E  +  L  E+    FN SSPKQ+ ++LF KLK P+
Sbjct: 517 QGILIDKEQLKLQTQQILKKINHIEWQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLPN 576

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             K       TT++++ +     +PII  +LE R+ +K+ +TY       I    + VHT
Sbjct: 577 LEK------GTTSKEVLEKLITYHPIINLLLEHRKYTKLYTTYLKGFEKFIFDDNK-VHT 629

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            ++   T TGRL+S  PN+QNI I+ +  +++R+ FI+   K  +S DYSQIELR+LA +
Sbjct: 630 IFNHTLTNTGRLSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQM 689

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +K T L   F  + DIH   A  IF ++ ++++ + RR AK  NF I+YG++ F LA+ L
Sbjct: 690 SKETNLINAFNQNADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDL 749

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            +  ++A   IK Y+  FP + ++ EK        GY+ T+  RR + +E+NS   +IR 
Sbjct: 750 NMNVNQAKQMIKDYYSAFPSLLDFKEKQVEIATSKGYITTLSNRRRYINELNSTNHNIRQ 809

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             +R A+N PIQG+A+DI + AMIS++K L++  L  K++ QIHDE++ EV + ++    
Sbjct: 810 FGKRIAVNTPIQGTASDILKVAMISIYKKLKEQNLDAKIICQIHDEIILEVDDNQLEQTK 869

Query: 942 QIIVHSMEKACLPKI-NLR------VPLKVNIKVSNNWQE 974
           +I+V  +E A      +L       V LKV   V   W +
Sbjct: 870 KIVVSELENALEKLFLDLNIKDQVVVKLKVGESVGKTWFD 909


>gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
 gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
          Length = 857

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 272/976 (27%), Positives = 449/976 (46%), Gaps = 128/976 (13%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAFY   +L+ K +GL  N I GF  ML +L    R E   +  AV F
Sbjct: 2   KLLILDGNSILNRAFYGIKVLTTK-EGLYTNGIYGFLTMLQRL----RDEVDPNAVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++ Y  YKANR  +P  L  QLP+++    A G   +E  GFEADDI+ T  
Sbjct: 57  DRKEPTFRHKAYDGYKANRRGMPPELAQQLPILKELLTALGYRLVECPGFEADDILGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
             AE+ G    I + D+D +QLVSP   +     +         D   +++ +       
Sbjct: 117 AQAERTGNDCVIATGDRDSLQLVSPAVTVRLAATKMGRPEVTLYDEAKIMEVY------- 169

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
                             G+  K    +    G+  + +     I QK   E I  Y   
Sbjct: 170 ------------------GVTPKELIEIKAIQGDSSDCIPGVKGIGQKGAAELIQRYHSV 211

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             L                ++ L ++      L + LKA E +  ++R+  T   DA   
Sbjct: 212 QYLY-------------DHIDELEIK----EGLRTKLKAGEESARLSRMLGTIRTDA--- 251

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            PV L++          +  +     +   +F SL D+         P +      +   
Sbjct: 252 -PVDLNLEDYRLGEGDRKEALR---LMAKLEFFSLIDKMGLRREGDEPVEEARAGGELT- 306

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                       V  +  + +++  E                       +A++  ++ + 
Sbjct: 307 ------------VTEESPEAFLKAAEEEPEVC-----------------LALAYGEEGEI 337

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           T           +VH   +   K  +              E      HN K     L R 
Sbjct: 338 TQ---CAFLKSDTVHLVTEGAEKAVMG---------LCSLEGMSLCVHNSKPLFAWLDRM 385

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G   R   D ML +Y+L+   S + +  +         +E   +    +          +
Sbjct: 386 GGEARVSYDAMLAAYLLNPNASDYSLKRL---------QEEAGTAAPKL----------E 426

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
                 + V+ ++       L+      + E ++ P+  V+++ME  G  +D + ++   
Sbjct: 427 NETAWQAAVLPRVKNWQAASLLANGQRKLLEEMEIPLAQVLARMENIGFLVDGESIRVYG 486

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
             +   + +L++ IY+  G +FN++SPKQLGD LF KL  PSG KTKTG + T A+ LE+
Sbjct: 487 ERLETEIEALQKQIYEEVGYEFNINSPKQLGDALFVKLGLPSGKKTKTG-YSTNAEILEK 545

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D+P ++ +L +R L+K+KSTY + +   I     R+H+ ++   T TGR++S EPN
Sbjct: 546 LRY-DHPAVELVLHYRTLTKLKSTYCEGMLKVIGPDG-RIHSNFNQTETRTGRISSTEPN 603

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIP++T+LG+++R+ F++     L+ ADYSQIELR+LAHIA    + + F++  DIH 
Sbjct: 604 LQNIPVRTELGRELRKFFLAKEGWVLVDADYSQIELRVLAHIAHDENMIKAFQDKEDIHT 663

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + A+++FG+  E V+P MR  AK +NF I+YGI  F L+  + + R EA  YI  Y   +
Sbjct: 664 ITASQVFGMPPEMVTPLMRSRAKAVNFGIVYGIGAFSLSKDINVSRKEAQRYIDDYLTLY 723

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+  Y+++     +++GYVET+F RR +  E+ +   ++R   ER A N PIQG+AADI
Sbjct: 724 SGVDRYMKEVVEKAKEDGYVETLFHRRRYLPELTASNFNLRAFGERVARNMPIQGTAADI 783

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ V + L+   +  +++LQ+HDEL+ E PE+E   A++I+   ME A    ++L 
Sbjct: 784 IKIAMVRVDRRLKRENMRARLILQVHDELIVEAPEDEAEQAARILTEEMEGA----VSLT 839

Query: 960 VPLKVNIKVSNNWQEE 975
           VP+     V   W + 
Sbjct: 840 VPMVAEASVGKTWYDA 855


>gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 911

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 284/1000 (28%), Positives = 468/1000 (46%), Gaps = 121/1000 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +  + +VDG+S I+RAFYAT       L +   G+  NA+  F NML  ++         
Sbjct: 2   KTKILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIHQRGPY--- 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            H  + FD    TFR+++  DYKANR K P  L+ Q  +VR       I   E +  EAD
Sbjct: 59  DHILIAFDKSKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEAD 118

Query: 119 DIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DI+ +    AEK+       I+S+DKD+ QL++      + V+     E++D   + +KW
Sbjct: 119 DIVGSICKYAEKQFDDLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEVDTNKLFEKW 178

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            I P ++   +A+ GDS DN+ G+ GIG K A  L+Q+Y +LENI  +  ++K    +  
Sbjct: 179 QILPNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYESLENIYNSLEQLKGA-IKTK 237

Query: 233 ILEYAETARLSRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           + +  + A L + L  ++TDV +       L   D N   +  FL   E   L  R    
Sbjct: 238 LEQDKKMAFLCKDLATIKTDVVLENFSFNKL---DFNVDNIYEFLNKYEMYSLKKRFTNI 294

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
            +          LD N  +NK                                   Q L 
Sbjct: 295 LN----------LDFNPYQNKK----------------------------------QNLD 310

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           ++ +   S+   ++ +Y  + + ++                       D    K I I I
Sbjct: 311 VKIINSWSKDYEDSINYLYVESLEE-----------------------DYHKDKIIGIGI 347

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S               ++D      Q S  ++T      S  ++F  N +  K  ++IK 
Sbjct: 348 SNNKGN---------FYLDFKNKAQQLSFFEDTTLSSTDSLFEEFLNNSNLKKYTYDIKK 398

Query: 472 DKLVLHRYGISM--RGFE-DIMLMSYVLDSG---RSSHDIASIAQKWLSYTRKEILKSRK 525
              +L  +  ++    F+ D M+  Y L++      S+ I  +       T  EI     
Sbjct: 399 TTYLLKNHKYNVLASNFDFDFMVACYSLNANVISDLSNQIKLVDNMIELETIDEIFGKGV 458

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
              P   I      ++  + + ++ +    L  +L       +Y ++D P+I+V+  +E+
Sbjct: 459 KKNP--DIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEV 516

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPS 641
            GI ID++ LK  + +I K +  +E  +  L  E+    FN SSPKQ+ ++LF KLK P+
Sbjct: 517 QGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLPN 576

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             K       TT++++ +     +PII  +LE R+ +K+  TY       I    + VHT
Sbjct: 577 LEK------GTTSKEVLEKLITFHPIINLLLEHRKYTKLYITYLKGFEKFIFDDNK-VHT 629

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            ++   T TGRL+S  PN+QNI I+ +  +++R+ FI+   K  +S DYSQIELR+LA +
Sbjct: 630 IFNHTLTNTGRLSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQM 689

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +K + L + F    DIH   A  IF ++ ++++ + RR AK  NF I+YG++ F LA  L
Sbjct: 690 SKESNLIKAFNQDADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLANDL 749

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            +  ++A   IK Y+  FP + ++ EK        GY+ T+  RR + DE+NS   +IR 
Sbjct: 750 NMNVNQAKQMIKDYYSAFPSLLDFKEKQVEIATNQGYITTLSNRRRYIDELNSTNHNIRQ 809

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             +R A+N PIQG+A+DI + AMIS++K L++  L  +++ QIHDE++ EV + ++    
Sbjct: 810 FGKRIAVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVNDNQLEQTK 869

Query: 942 QIIVHSMEKACLPKI-NLR------VPLKVNIKVSNNWQE 974
           +I+V  +E A      +L       V LKV   V   W +
Sbjct: 870 KIVVSELENALEKLFLDLNIKEQVVVKLKVGESVGKTWFD 909


>gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
 gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
          Length = 909

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 269/979 (27%), Positives = 468/979 (47%), Gaps = 109/979 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG+S + RAFY  P ++    GL  NAI GF N+++K L+        +H AV
Sbjct: 32  KQKLLLIDGNSILNRAFYGLPDMTNSQ-GLHTNAILGFLNIMFKFLEEEN----PTHLAV 86

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++++ DYK  R  +P+ L  Q+P++R   +A  IP +  +G+EADD++ T
Sbjct: 87  AFDLKAPTFRHKMFADYKGTRKGMPDELQEQVPVIREVLKAMNIPLMMEEGYEADDLLGT 146

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            + + E+ GF V I+S D+DL+QL +    +          +  V   +           
Sbjct: 147 MSVLGEQAGFEVKIVSGDRDLLQLATKKVQIRIPKTNRAGTV--VEDYY----------- 193

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE--YAETAR 241
               D +     +    +     L+   G+  + +     I +K   + I E    E A 
Sbjct: 194 ---EDDVLEKYQVTPKEFIDVKALM---GDTSDNIPGIPGIGEKTATKLIKEFQSIENAY 247

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPR--LISFLKALEFTKLINRVATTYDCDAANI 299
                              H+     N  +  L  +      +K +  +      D +  
Sbjct: 248 ------------------AHIDEVKPNRAKNNLQEYYDQGVMSKELATIKLDSPIDISFD 289

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +  + D+ T E   +  E E                             K  L+R     
Sbjct: 290 DAKLGDLYTKEAYHMLKELEF----------------------------KAILKRFDGEE 321

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           Q  +      +I++  + +    K      A   I        + +  A+ ++   + ++
Sbjct: 322 QEDLEVKI-KEIIDLAEAEDIFAKAVKKKEAGISI--------YKENDAMWVALNTEGEE 372

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   F  ++     +           ++ ++              +K     L  +
Sbjct: 373 VYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME--------------VKEHLSHLTIH 418

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536
            ++ +   D+ L +Y+++  +S+++   IA+ + S     +KE++  +   +  D +   
Sbjct: 419 EMT-KSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSKKELIDKKHPMVT-DGVLSD 476

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             ++     + +  +    L  KL   +++ +Y  ++ P +  +  ME+ GI +D   LK
Sbjct: 477 AGKKIMGYEAYISREAIQPLSDKLTELEMMDLYREIEIPTMFALHDMEVRGIHVDSKALK 536

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
               ++   +  L+E+IY  +GE+FN++SPKQLG +LF  +K     KTKTG   +T+ +
Sbjct: 537 GYGDQLVGRIEELQESIYKEAGEEFNINSPKQLGVVLFDHMKLEGAKKTKTGY--STSVE 594

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + +      PII  ILE+RQL+K+KSTYAD L N I +  QR+H  ++   T TGR++S 
Sbjct: 595 VLEKIEHLYPIIPMILEYRQLTKLKSTYADGLANFI-QDDQRIHGKFNQTITATGRISST 653

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIPI+ +LG+ IR+ F+       + ADYSQIELR+LAH+++   L   +E + D
Sbjct: 654 EPNLQNIPIRMELGRAIRKVFLPEEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQD 713

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+E+FG+ +++V+   RR AK +NF IIYG+S F L+  L+I R +A +YI RYF
Sbjct: 714 IHARTASEVFGIPMDEVTSTQRRDAKAVNFGIIYGLSAFGLSQDLKISRKQAQEYIDRYF 773

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P + E+++      + +GYV+T+F R     E+ S     RN  ER A+N+PIQG+A
Sbjct: 774 AMYPRVKEFLDGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQRNFGERVAMNSPIQGTA 833

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AM+ V+  L++ ++ +++LLQIHDEL+ E   +E     +I+ + M  A    +
Sbjct: 834 ADIIKIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNA----V 889

Query: 957 NLRVPLKVNIKVSNNWQEE 975
           +LRVPL ++I+   +W E 
Sbjct: 890 SLRVPLNIDIEQGASWYEA 908


>gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
 gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
          Length = 846

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 277/977 (28%), Positives = 450/977 (46%), Gaps = 156/977 (15%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   + L+DG    YR ++A   L+    G  V AI GF   L KLL+            
Sbjct: 21  RPERVVLIDGHHLAYRNYFALERLTTSK-GEGVQAIFGFIRTLLKLLKEDG-----HCVI 74

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD P  TFR++ +  YKA R   P+ L  Q+  ++   +  G+  +E+ G+EADD+I 
Sbjct: 75  VVFDPPTRTFRHDNFEAYKAGRAPTPDDLPGQIQKIKEIVEQMGLKRLEVPGYEADDVIG 134

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+EG+ V I++ D+D  QL+S    ++       +    V +K+G+  E+ V  
Sbjct: 135 TLAKKAEREGYEVRIVTGDRDAFQLLSDRVWVWLP-DGGVMGPNQVKEKYGVGVEQWVDY 193

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL                          G+  + +  A  I  K   + + E+      
Sbjct: 194 RALI-------------------------GDPSDNIPGAKGIGPKGAAKLLAEWG----- 223

Query: 243 SRKLVMLRTDVPITIPLEHL--ILEDCNGPRLISFLKA-LEFTKLINRVATTYDCDAANI 299
                           LE+L   LE+    RL   L+A LE  +L   ++          
Sbjct: 224 ---------------SLENLLAHLEEVKPERLRELLRASLEDIRLSYELSKMR-----TD 263

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            P+ LD      +      E++R+   +  +          ++  + P+           
Sbjct: 264 LPIDLDFPACHVR------EMNRERLRQELEALEFGSILRDLHLLEVPKPAEEAPWPPP- 316

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                                      +G+     + D      +K   +A +       
Sbjct: 317 ---------------------------MGAFLGFTM-DRAQPMWAKLTGLAAAW------ 342

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                                GK       L  LK F E           K   ++  + 
Sbjct: 343 --------------------DGKVYRGPTDLEELKGFHELSALA-----AKDLAVLAGKE 377

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G+ +   +D ML++Y+ D   S  + AS  +++               +  D +S     
Sbjct: 378 GLDIPPGDDPMLLAYLYDPANS--EPASTVRRY-----------GAGDLVADPVS----- 419

Query: 540 EHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                ++     LW  L  +    E+L  +Y  ++KP+  V++QME  G+ +D   L+++
Sbjct: 420 -----HAQAAWLLWETLSARTQGDERLWWLYREVEKPLAAVLAQMECRGVALDVPYLQEL 474

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           S E+ K L  LE  I+ L+G  FN++S  QL  IL+ +L   +G K  T   ++TA  + 
Sbjct: 475 SEELGKELGYLEAEIHRLAGHPFNVNSRDQLEAILYDELGLQAGGKKTTTGKRSTAASVL 534

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +PI+  IL++R+L+K+K TY D LP  I+ +T R+HT ++     TGRL+S +P
Sbjct: 535 EEMRSLHPIVGKILDYRELAKLKGTYLDPLPKLIHPKTGRLHTRFNQTVAATGRLSSSDP 594

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIP++T++G+KIR+AF++     L+ ADYSQIELRILAH++    L +VF    DIH
Sbjct: 595 NLQNIPVRTEVGRKIRKAFVAEKGYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIH 654

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              AA +FG+  EKV PQ RR AKTINF ++YG+S  RL+ +L I  +EA+ +I+RYF  
Sbjct: 655 TQTAAWMFGLEPEKVDPQHRRAAKTINFGVLYGMSAHRLSGELGISYAEASGFIERYFAS 714

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P +  +IEKT    R+ GYVET+FGRR    ++ S   +I+   ER A N P+QG+AAD
Sbjct: 715 YPKVRLWIEKTLAEGRERGYVETMFGRRRFVADLESKNRAIKEAAERMAFNMPVQGTAAD 774

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + AM+ ++  L++      ++LQ+HDELV E PE      ++++   M+        L
Sbjct: 775 LMKLAMVKLYPKLKERG--AHLVLQVHDELVVEAPEPLAKEVAEVMCEVMQNV----WEL 828

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPL+V + + +NW E 
Sbjct: 829 DVPLEVGVGIGHNWLEA 845


>gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
 gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
          Length = 847

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 269/941 (28%), Positives = 445/941 (47%), Gaps = 101/941 (10%)

Query: 38  IAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
           I+GF N ++ L    + E  + +     D    TFR++I P+YK NR   P  LL Q+P+
Sbjct: 2   ISGFANFIYSL----KNEYKSDYIIFALDSKGKTFRSDIDPNYKKNRTPPPPELLEQIPI 57

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYD 156
                +  G  +   +G+EADDIIA+     + +   V II+ DKDL QL+    T +Y 
Sbjct: 58  CIEMIEKMGFMSASYEGYEADDIIASVVKTCKDKDIFVRIITQDKDLYQLIKDGKTSIYS 117

Query: 157 TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
            + +   D E   +K+G+ P ++    AL GDS DNIPG+ GIG K A  LL E+G++E 
Sbjct: 118 PISKNDYDEEACFEKYGVKPYQIKDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEG 177

Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           I  N + ++ ++ R+ +LE  E A LS+KL                           S  
Sbjct: 178 IYENLTLVRNERSRKLLLEGKENAFLSKKLA--------------------------SLY 211

Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
           + LE + L+ +       D    EP++  +   E+  + +  +  R       +      
Sbjct: 212 EDLEVSNLLEK------ADFPQDEPLLKILEILEHYELNVLLKKLRQNPDNKDKNLGFKA 265

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396
                                           T I +   + + +  LE     +F   T
Sbjct: 266 --------------------------------TLIQDEDKLFEILNSLEQESIIAFDTET 293

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
            ++D   +K +  +    + +          ++ L+ +      GK    +     ++  
Sbjct: 294 TSIDTKEAKIVGFSFCMSENE--------AFYVPLTHNYL--GVGKQVSLQSAKKAIELI 343

Query: 457 FENEHFLKIGHNIKYDKLVL-HRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
           F       IGHN+KYD  ++ + + +S+ + + D M+++++ +      ++  +A +  +
Sbjct: 344 F---KHFIIGHNLKYDFKIIENNFKLSLPQKYADTMILAWLKNPS-LRVNMDDLALRLFN 399

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
           Y         K       +   +  ++A E++ + L+ +L     L    LL + +  + 
Sbjct: 400 YETLHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNL-EPHLLDLAKNYEF 458

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
             I ++  ME  GI++D   L+ +  +    +  L E IY L  ++FNL+SPKQ+GDILF
Sbjct: 459 DFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCEDRFNLNSPKQVGDILF 518

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-IN 693
            KLK PSG K KTG         E +    +P+I  IL++R+L+K+ STY + L    + 
Sbjct: 519 EKLKLPSGKKGKTGYSTDEKVLNELL--DKHPVISKILDYRELAKLYSTYCEPLLKLALK 576

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
               R+++ +    T TGRL+S +PNLQNIP      +  +  FI+      IS DYSQI
Sbjct: 577 DENSRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQI 636

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR+LAH ++   L   F+N  DIH   A  IFG    + + + R  AK+INF +IYG+ 
Sbjct: 637 ELRMLAHFSEDEKLLNAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMG 692

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
              L+  L+I  + A  YI++YF  F  I  Y EK KN  + NG++ T+ GR+ ++D  N
Sbjct: 693 YKTLSKNLKIEANLAKTYIEKYFENFTSIKSYFEKVKNEAKANGFISTLSGRKRYFDFEN 752

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           + K     + ER +IN+ +QGSAADI + AM+ + K L   K   +++LQIHDEL+FEV 
Sbjct: 753 A-KPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDK---RLILQIHDELIFEVK 808

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +E      +     ME      + L+V LK +  ++  W +
Sbjct: 809 DELCENFVKKTSDIMEN----IVKLKVKLKTSSSIAKKWGD 845


>gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
           polymerase 1
 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
 gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
          Length = 831

 Score =  632 bits (1630), Expect = e-178,   Method: Composition-based stats.
 Identities = 271/972 (27%), Positives = 452/972 (46%), Gaps = 154/972 (15%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+      +    
Sbjct: 8   EPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDVVVVV-- 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ GFEADD++
Sbjct: 65  ---FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDVL 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    AEKEG+ V I++ D+DL QL+S    +        I    + +K+         
Sbjct: 122 ATLAKRAEKEGYEVRILTADRDLYQLLSERIAILHPE-GYLITPAWLYEKY--------- 171

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L  +   +   +               G+  + +     I +K  +  I E+     
Sbjct: 172 --GLRPEQWVDYRALA--------------GDPSDNIPGVKGIGEKTAQRLIREWGSLEN 215

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           L + L  ++  +                 +L + ++AL  ++ +++V T          P
Sbjct: 216 LFQHLDQVKPSL---------------REKLQAGMEALALSRKLSQVHTDL--------P 252

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           + +D        +              S             +E+ P           S  
Sbjct: 253 LEVDFGRRRTPNLEGLRAFLERLEF-GSLLHEFGLLEGPKAAEEAPWPPPEGAFLGFSFS 311

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                                                 +   ++ +A+A +   +     
Sbjct: 312 RP------------------------------------EPMWAELLALAGAWEGR----- 330

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                      +H +QD        K +   L                K   ++  R G+
Sbjct: 331 -----------LHRAQDPLRGLRDLKGVRGIL---------------AKDLAVLALREGL 364

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +   +D ML++Y+LD   ++ +   +A+++     ++                      
Sbjct: 365 DLFPEDDPMLLAYLLDPSNTTPE--GVARRYGGEWTED---------------------- 400

Query: 542 AIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A E + +  +L+  L+ +L   E+LL +YE ++KP+  V+++ME TG+++D   L+ +S 
Sbjct: 401 AGERALLAERLFQTLKERLKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQALSL 460

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+   +  LEE ++ L+G  FNL+S  QL  +LF +L  P+  KT+    ++T+  + + 
Sbjct: 461 EVEAEVRQLEEEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEA 520

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +PI+  IL++R+L+K+K+TY D LP  ++ +T R+HT ++  +T TGRL+S +PNL
Sbjct: 521 LREAHPIVDRILQYRELTKLKNTYIDPLPALVHPKTGRLHTRFNQTATATGRLSSSDPNL 580

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++T LGQ+IRRAF++     L+  DYSQIELR+LAH++    L +VF+   DIH  
Sbjct: 581 QNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQ 640

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+ +FGV+ E V P MRR AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  +P
Sbjct: 641 TASWMFGVSPEGVDPLMRRAAKTINFGVLYGMSAHRLSGELSIPYEEAVAFIERYFQSYP 700

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            +  +IE T    R+ GYVET+FGRR +  ++N+   S+R   ER A N P+QG+AAD+ 
Sbjct: 701 KVRAWIEGTLEEGRRRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLM 760

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ +   L++  L  +MLLQ+HDELV E P++     + +    ME        L+V
Sbjct: 761 KLAMVRLFPRLQE--LGARMLLQVHDELVLEAPKDRAERVAALAKEVMEGV----WPLQV 814

Query: 961 PLKVNIKVSNNW 972
           PL+V + +  +W
Sbjct: 815 PLEVEVGLGEDW 826


>gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 879

 Score =  632 bits (1630), Expect = e-178,   Method: Composition-based stats.
 Identities = 268/977 (27%), Positives = 467/977 (47%), Gaps = 105/977 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG+S + RAFY  P ++    GL  NAI GF N+++K L+        +H AV
Sbjct: 2   KQKLLLIDGNSILNRAFYGLPDMTNSQ-GLHTNAILGFLNIMFKFLEEEN----PTHLAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++++ DYK  R  +P+ L  Q+P++R   +A  IP +  +G+EADD++ T
Sbjct: 57  AFDLKAPTFRHKMFADYKGTRKGMPDELQEQVPVIREVLKAMNIPLMMEEGYEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            + + E+ GF V I+S D+DL+QL +    +          +  V   +           
Sbjct: 117 MSVLGEQAGFEVKIVSGDRDLLQLATKKVQIRIPKTNRAGTV--VEDYY----------- 163

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
               D +     +    +     L+   G+  + +     I +K   + I E+       
Sbjct: 164 ---EDDVLEKYQVTPKEFIDVKALM---GDASDNIPGIPGIGEKTATKLIKEFQS----- 212

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR--LISFLKALEFTKLINRVATTYDCDAANIEP 301
                      I     H+     N  +  L  +      +K +  +      D +  + 
Sbjct: 213 -----------IENAYAHIDEVKPNRAKNNLQEYYDQGVMSKELATIKVDSPIDISFDDA 261

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            + D+ T E   +  E E                             K  L+R     Q 
Sbjct: 262 KLGDLYTKEAYHMLKELEF----------------------------KAILKRFDGEEQE 293

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                   +I++  + +    K      A   I        + +  A+ ++   + ++  
Sbjct: 294 DFEIKI-KEIIDLAEAEDIFAKAVKKKEAGISI--------YKENDAMWVALNTEGEEVY 344

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 F  ++     +           ++ ++              +K     L  +  
Sbjct: 345 LFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME--------------VKEHLSHLTIHE- 389

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQV 538
           + +   D+ L +Y+++  +S+++   IA+ + S     RKE++  +   +  D +     
Sbjct: 390 TTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSRKELIDKKHPMVT-DGVLSDAG 448

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++     + +  +    L  KL   +++ +Y  ++ P +  +  ME+ GI +D   LK+ 
Sbjct: 449 KKIMGYEAYISREAIQPLSDKLTELEMMDLYREIEIPTMFALHDMEVRGIHVDSKALKEY 508

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             ++   +  L+E+IY  +GE+FN++SPKQLG +LF  +K     KTKTG   +T+ ++ 
Sbjct: 509 GDQLVGRIEELQESIYKEAGEEFNINSPKQLGVVLFEHMKLEGAKKTKTGY--STSVEVL 566

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +      PII  +LE+RQL+K+KSTYAD L N I +  QR+H  ++   T TGR++S EP
Sbjct: 567 EKIEHLYPIISMVLEYRQLTKLKSTYADGLANFI-QDDQRIHGKFNQTITATGRISSTEP 625

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNIPI+ +LG+ IR+ F+       + ADYSQIELR+LAH+++   L   +E + DIH
Sbjct: 626 NLQNIPIRMELGRAIRKVFLPEDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIH 685

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+FG+ +++V+   RR AK +NF IIYG+S F L+  L+I R +A +YI RYF  
Sbjct: 686 ARTASEVFGIPMDEVTSTQRRDAKAVNFGIIYGLSAFGLSQDLKISRKQAQEYIDRYFAM 745

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P + E+++      + +GYV+T+F R     E+ S     RN  ER A+N+PIQG+AAD
Sbjct: 746 YPRVKEFLDGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQRNFGERVAMNSPIQGTAAD 805

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM+ V+  L++ ++ +++LLQIHDEL+ E   +E     +I+ + M  A    ++L
Sbjct: 806 IIKIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNA----VSL 861

Query: 959 RVPLKVNIKVSNNWQEE 975
           RVPL ++I+   +W E 
Sbjct: 862 RVPLNIDIEQGASWYEA 878


>gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277]
 gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277]
          Length = 863

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 266/951 (27%), Positives = 442/951 (46%), Gaps = 98/951 (10%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G P   ++GF + +  L    R+E  + +     D    T R+EI  +YKANR + 
Sbjct: 5   KNREGKPSGMVSGFASFIMNL----RQEFASDYIIFALDSKGKTLRHEILGEYKANRSEP 60

Query: 88  PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           P  L  QLP+     +  G+ A+  +G+EADDIIA+     ++    V I++ DKDL QL
Sbjct: 61  PAALKEQLPVCIEMIEKMGLAAVSREGYEADDIIASVVKECKQRDIFVRIVTHDKDLYQL 120

Query: 148 VSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           +      +Y    +   D    I+K+G+PP  +    A+ GDS DNIPG+ GIG   A  
Sbjct: 121 IEDGKVSIYSPQSKIDHDSASCIEKYGVPPSCIRDFLAIAGDSSDNIPGVKGIGAVGAKK 180

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           LL E+GNLE I  N   ++ ++ R  + E  E+A LS+                      
Sbjct: 181 LLNEFGNLEGIYENLPLVRNERIRGMLAEGRESAFLSK---------------------- 218

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
               RL S    +                     P VLD+   E                
Sbjct: 219 ----RLTSLFDDV---------------------PDVLDLKRAEF--------------P 239

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           + +    ++D   + +  +  + L   +    +       +   + +  +I++ +  ++ 
Sbjct: 240 EQNPLVKVADTLREYDLNRLLKALQNSQDAGENAEFKLGFNARLLTDENEIERLLANIDA 299

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +F   T  +D  +++ +  +    D++          ++ +S     +  G     
Sbjct: 300 DTLVAFDTETTDVDTQNARLVGFSFCFNDEE--------AYYVPVSH----EYLGAPKQA 347

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMR-GFEDIMLMSYVLDSGRSSHD 504
            E  +      +      IG N+KYD  +V    G+     F+D M++++++D G SS  
Sbjct: 348 SEKFAAWA-ISQIYKGCVIGQNLKYDFKVVKRNLGLEPPVNFKDTMILAWLMDPG-SSVG 405

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           + ++A++   Y   +     K       ++     ++A E++ + L+ +      L+  +
Sbjct: 406 MDALAKRLYDYDTIKFEDVVKRGETFASVALENAAKYAAEDAWITLKFYKSFL-NLLDPE 464

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           LL + +  +   I  +  ME  GI I+++ ++ +       + +L   IY+L+GE FN++
Sbjct: 465 LLALADTHEFAFILTLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYELTGENFNIN 524

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQLG +LF  LK P   KTKTG   +T + +      ++P+I+ +LE+R+L K++STY
Sbjct: 525 SVKQLGSVLFEHLKLPVKKKTKTGY--STDEAVLAELIDEHPVIEKLLEYRELYKLQSTY 582

Query: 685 ADSLPNHINKR-TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
            + L N   K    R++T +    T TGRL+S  PNLQNIP +  L + +R  F +    
Sbjct: 583 CEPLLNLAKKDANSRIYTNFIQTGTSTGRLSSKNPNLQNIPARGALAKDVRGCFEAKSDF 642

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             +  DYSQIELR+LAH ++   L + F N  DIH   A  IFG        Q R  AK+
Sbjct: 643 SFVGLDYSQIELRLLAHFSRDEALLRAFANDEDIHARTAISIFGSAE----GQNRAVAKS 698

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           INF +IYG+   +LA Q+ I R+EA +YI+RYF  FP I  ++E  K   +  G+V T+ 
Sbjct: 699 INFGLIYGMGSSKLANQVSITRAEAKEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLL 758

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GR+  +D   +       + ER A+N   QGSAADI + AM+ +   L       +MLLQ
Sbjct: 759 GRKRLFDFTTAT-PMQTAMYEREAVNTIFQGSAADIIKMAMVKIRPLL---SPRARMLLQ 814

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           IHDEL+FEV +             M++       L V LK ++ V+ +W E
Sbjct: 815 IHDELIFEVQDGYAEEFGAAAQKIMQE----IYKLNVLLKTSLNVAKDWGE 861


>gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali]
          Length = 875

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 321/982 (32%), Positives = 476/982 (48%), Gaps = 113/982 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+Y    L     G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYTQQPL-NSPKGEPVGALYGFTSMLLKLLSDFKPQ----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++IY DYKANRP  PE L+ QLPLVR        P +E  G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHQIYSDYKANRPPPPEDLIVQLPLVRDVAGNLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+        
Sbjct: 116 IATFATKTAALGEHVVIISSDKDLLQLMTEHIKIYDPLKGKYITEDDVVKKF-------- 167

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                 G + D +  +          L+   G+  + +     I  K             
Sbjct: 168 ------GTTSDKLREV--------MALI---GDRSDNIPGVPSIGPKTAS---------- 200

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                L+     V                    +   +L+    I +  T  +   A + 
Sbjct: 201 ----SLITQFGSVE-------------------NIFNSLDQVSSIKQRETLQNSREAALI 237

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              L I    N  +  +    + +   + + +    +    +  +  + L   ++    +
Sbjct: 238 SWQL-IGLDSNVDLDFQLNNLKWSPPNSDKLTGFLQEYGFRSLYKRVENLLDIKINDHKE 296

Query: 361 YPINNDSY-TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              N  +   +I N  ++  + ++ E IG     +          K   +A     Q   
Sbjct: 297 IADNKVTEIKEINNANELADFAKEAEKIGIFGIYL-------LQHKGANLAFILSLQNQS 349

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              K+     DL  + +       T        +     ++   KI +++K         
Sbjct: 350 YIIKISNTSHDLFSYNT------QTNNNWFSDIIFNLLTDKSIKKITYSLKPLLKFYANQ 403

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
              +   ED+ LM Y L +G S  ++                          ++    + 
Sbjct: 404 SHDITAIEDLELMQYALSAGLSQKNL------------------------FKEVLKETLI 439

Query: 540 EHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           E+ I  S  I+  ++ L  +    L   K   +Y  +D P+  ++ +ME  GI +D + L
Sbjct: 440 ENIIIESAKIVINFISLYKQTILELKDNKTFRLYSDIDLPICFILDKMEKVGITVDANYL 499

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTA 654
           KQ+SAE    +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G    K   + T A
Sbjct: 500 KQLSAEFGTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE+++     I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+
Sbjct: 560 EILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIPI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N 
Sbjct: 620 SQEPNLQNIPIRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINK 679

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A +IF +   +++ + RR AK INF IIYGIS F LA QL     EA++YIK+
Sbjct: 680 DDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNATNGEASEYIKK 739

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  + G+ EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG
Sbjct: 740 YFAEYKGVQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQFAERAAINAPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +   
Sbjct: 798 TNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST-- 855

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             N+ VP+   I+  NNW E +
Sbjct: 856 --NMDVPIITEIRAGNNWMEIH 875


>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
 gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
          Length = 849

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 291/970 (30%), Positives = 475/970 (48%), Gaps = 135/970 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             +VD   F++RA+YA P L     G P+  + GF N+L K L     E  A + AV+FD
Sbjct: 4   FVVVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLM----EHDADYLAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             +  FR+ +YP YK NRP++PE LL Q   +R A  A GI + E+Q FEADD+IAT + 
Sbjct: 59  TGSKNFRHAMYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVQNFEADDVIATLST 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
               +   V I++ DKDL+QL+     ++D ++   +  E+V+ K+              
Sbjct: 119 KYASQDVQVRIVTADKDLLQLIGEHVQVFDPIRNRYLTNEYVVDKF-------------- 164

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
                      G+       +L   G+  + +     I  K                 KL
Sbjct: 165 -----------GVTPDRLLDVLALTGDTSDNIPGVPSIGVKTAA--------------KL 199

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
           V     +   +     + +      LI        ++ +  +  T + D         D+
Sbjct: 200 VNQFGSLDNVLNCAEQVEQKKCREMLIQHADQATLSRDLVSLQRTVEFDG--------DL 251

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           +    +    E  +      +        +Q  +++ + + ++   E  +          
Sbjct: 252 DKYAKRPPDTERLLAFLEKYELGSLRGKIEQCYQVSFKSSERQDAGELPESQ-------- 303

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASF--KIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                  T+D   ++ K E+IG  +F  KI  +T++                        
Sbjct: 304 -------TEDPVAFLHKCESIGVLAFYAKIADETINELS--------------------- 335

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 ++       T +    +  +   K+   ++  LK+ H+ K         G+   
Sbjct: 336 ------VAYDREHALTIRKEEVQNFMEVAKQILASDSVLKVVHDAKLIMQHFPDLGV--- 386

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
            F+D+MLMSY LD+    H +  +  ++L                         Q+   +
Sbjct: 387 -FDDVMLMSYSLDASSHDHSLTGMTYRYLH------------------------QKFPAK 421

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            +  ++QL  ++R KL+ ++L  VY +L++P++ V+ +M+  GI++D ++LKQ+S +   
Sbjct: 422 MACALVQLHSVMREKLLSDRLFTVYYQLERPLVRVLYEMQEVGIEVDTEILKQLSRDFHG 481

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS-GAKTKTGQWKTTAQDLEQINCG 663
           ++ SLE  IY L+G KFN++S +QLG +LF ++   S   K  +G + T A+ L ++   
Sbjct: 482 SIRSLEREIYGLAGCKFNVASARQLGKLLFERMGLSSSTKKMPSGSYSTNAEVLTELAAE 541

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
              I   +L+WR  SK+KSTY D+L   +   T+RVHT YS+ +T TGR++S  PNLQNI
Sbjct: 542 GVEIADKVLKWRHFSKLKSTYVDALLRQVETGTERVHTSYSMVATATGRISSSNPNLQNI 601

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI++  G +IR+AF++    KL+SADYSQ+EL+I+AHIA +      F    DIH++ A 
Sbjct: 602 PIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFAEGKDIHQVTAQ 661

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           +IFG ++    P++RR AK+INF IIYG+SPF LA  + I R EA  Y+++YF  +P I 
Sbjct: 662 QIFGDDVT--DPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEATQYVEQYFRSYPEIK 719

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y+E  K + R+ GY  T FGR+ +   INS + +IR   ERAAINAPIQG+AAD+ ++A
Sbjct: 720 NYMEAIKAYARKYGYTRTAFGRKCYVPGINSAQHAIRGFAERAAINAPIQGTAADVVKKA 779

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           MI++   LE       ++LQ+HDEL+ EVPE  +   +Q++   ME       +  VPL+
Sbjct: 780 MINLRDKLE----VGTIILQVHDELLVEVPESHVDNVAQLMKEVMEGVA----SFSVPLR 831

Query: 964 VNIKVSNNWQ 973
           V+I V N+W 
Sbjct: 832 VDIGVGNSWG 841


>gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
          Length = 867

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 287/981 (29%), Positives = 464/981 (47%), Gaps = 132/981 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+S +++AFYAT          +G+P N + GF  M+ K+L     ++   +  V
Sbjct: 4   LILIDGNSLLFKAFYATSYTGNYMVNRNGIPTNGVYGFARMVDKIL-----DNNPKYVIV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FDY   TFRNE+   YKA R + PE L+PQ  L R    A  I   E++GFE DDII T
Sbjct: 59  AFDYGKKTFRNELLDTYKAQRKETPEELIPQFSLAREYLTAHNITWYEVEGFEGDDIIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                EK    V++ + DKD  QL+SP T +Y T+K     +  + + ++ K+G+     
Sbjct: 119 LVDFGEKNNLKVSVYTGDKDAFQLISPQTTIYRTIKGVTELDIYNEQTLLDKYGLK---- 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
                                       L   G+  + +     + +K   + + +Y   
Sbjct: 175 ---------------------PDQIRDFLGLMGDTADNIPGIKGVGEKTALKLLHQYE-- 211

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                              +E L   + +   L   +       + + + +         
Sbjct: 212 ------------------TIEGL---EEHQNELKGKMGEKIRAGMEDALMSKKVATILRD 250

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK-LFLERLQKL 358
            P+ +D+   E +G   +T      T   +           +  E  P+K L LE +  +
Sbjct: 251 VPLDVDLKKAEYEGYDYDTLKSFYETYDMNSL------IKSMTIEAAPKKELKLEIVDHM 304

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                ++  Y  I +T                         +   S  +   I   +Q  
Sbjct: 305 PGITKDSAVYASIYDT-------------------------NYHRSIILGYGIYNDEQAY 339

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             S++                       +  L+YLK    +E   K G++IK   +    
Sbjct: 340 FISYENA------------------LKDESFLAYLK----DETKKKYGYDIKSAVIGSRW 377

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKI 533
            G+ + G+  D+ L SYVL+      ++  +   +    + Y  +   K  K  IP    
Sbjct: 378 NGVEINGYTFDLSLASYVLEPAI-KEELKYVCTHFDYDGVQYDEEVFGKGAKKHIP---- 432

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            D+ + +H +  +  I +L  ++  +L  +K   +YE ++ P+  ++ +ME  G +ID D
Sbjct: 433 DDALLAQHTVSKAKAIYELKDVVTKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLD 492

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           +LK++     + +  L  +IY +SG  FN+SSPKQLG +LF  L    G KTKTG   +T
Sbjct: 493 VLKEMDEAFDETIEKLSNDIYRISGTTFNISSPKQLGQVLFEDLGLKGGKKTKTGY--ST 550

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +QD+ +     +P++  +LE+R L+K+ STY   L   +    + +HT Y    T TGRL
Sbjct: 551 SQDVLEKIIDAHPVVPLVLEYRMLTKLSSTYLKGLQEQVFPDNK-IHTIYKQTLTHTGRL 609

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +S++PNLQNIP++++ G+ IR+AF+S     L+S DYSQIELRILAH+A +T L   F  
Sbjct: 610 SSVDPNLQNIPVRSEEGKLIRKAFVSHNGY-LVSFDYSQIELRILAHMAHVTNLIDAFNQ 668

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             DIHR  AA +FGV  E+V+PQMR  AK +NF IIYG+S FRL+  + +  +EA ++I 
Sbjct: 669 GKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNFGIIYGMSEFRLSKDIGMSIAEARNFIN 728

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +YF  +P +  Y+++     ++ GYV T+  R+ +   IN     +R   +R A+N PIQ
Sbjct: 729 KYFETYPEVKTYMDEVVEVCKKQGYVSTLLNRKRYIPTINDKNFMVRQQAQRYAMNTPIQ 788

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G+ ADI + AMI V K+L+ H L ++M+LQ+HDEL+F+V E+E+     ++   ME    
Sbjct: 789 GTGADILKLAMIEVDKALKVHHLKSQMILQVHDELIFDVFEDELEEVMSLVKEKMENC-- 846

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
             I + VPL V    + NW E
Sbjct: 847 --IKMDVPLIVEGNYAKNWCE 865


>gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 884

 Score =  630 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 303/976 (31%), Positives = 488/976 (50%), Gaps = 97/976 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K     L+D S+ +YRA+YA   +  K   +P  A+ GF   L++LL+    E    + A
Sbjct: 2   KMKRALLLDVSAMMYRAYYANMNMRTKE--MPTGAVYGFLLTLFQLLKEYEPE----YMA 55

Query: 63  VIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
             FD       R E+Y +YK+NR   PE LL Q+P +     AFGI  I+I+G+EADD++
Sbjct: 56  AAFDIKRSHLKRTELYAEYKSNRDSAPEDLLKQIPYIEAVLDAFGIQRIKIEGYEADDVL 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            + +    K+G  VTI++ DKD+ QL+     +Y   KE     E V     + PEK+  
Sbjct: 116 GSLSTKLSKKGIPVTIVTGDKDISQLLDENIEIYLLGKEVLKTREDVKNYIDVYPEKIPD 175

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L  L GDS D IPG+  IG K A  +L +Y NLE I  N  +                  
Sbjct: 176 LFGLIGDSSDCIPGVRKIGPKKAVPMLDKYENLEGIYENIDK------------------ 217

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                               LI     G  LI  +K  +    ++R     + +      
Sbjct: 218 --------------------LIEIPGVGKTLIEIMKEDKELAFLSRTLAKIEKN------ 251

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
             LD + +       + E       +  +F S   +      EQ  +K  ++  + + Q 
Sbjct: 252 --LDFSFSLEDLYFEKKEEALREIFQKLEFKSFLKRL-----EQKEEKEQIKVAEVIPQK 304

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +  S  +IVN   I++   +++           + +   + +   +  ++ ++     
Sbjct: 305 KKSEKSENRIVN--SIEELKAEIKEF------TEEEKIILLYDRL-GLTCTSSNKS---- 351

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                I+I L      +S          L   +K F +       +++K     L + G 
Sbjct: 352 -----IYIPLFHIGLLESNID-------LEECQKLFFSLKGKLYTYDLKE----LLKLGF 395

Query: 482 SM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           S  +   D+M+  Y L S ++  D  SI Q +L    ++  K+  +   I+ +S      
Sbjct: 396 SFQKPVYDMMIA-YHLVSSQTKEDYTSIGQYYLKTIAED-EKTVFAKQKIETLSIDSYGN 453

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             ++ S ++      L   L  ++L +V    + P+I V++ ME  GI+ID+   ++ S 
Sbjct: 454 FLLKRSQILYSCLEPLEKDLKEKELENVLWETELPLIPVLASMEKQGIKIDRKYFQKYSL 513

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E+++ L+ LE+ I+  +GE+FN++SPKQLG+ILF KL  P+G KTKTG + T  + LE +
Sbjct: 514 ELNEKLVLLEKEIWKEAGEEFNINSPKQLGEILFLKLNLPTGKKTKTG-FSTDVEVLENL 572

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
           +     I  N+LE+R+L+K+K+TY D +P  +     R+HT Y    T+TGRL+S +PNL
Sbjct: 573 SSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFDD-RIHTCYHQIGTVTGRLSSSDPNL 631

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP+KT+ G +IR+ FI+    KL+S DYSQ+ELR+LA ++K   L + ++   D+H +
Sbjct: 632 QNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSV 691

Query: 781 VAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
            A +IF +   E+VS + R  AK INFSIIYG +PF LA +L I   +AA+YIKRYF ++
Sbjct: 692 TAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDAAEYIKRYFAQY 751

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + ++  +   F  Q+GYVET FGR+   D I+S    ++N  ER A+N  +QG+AA+I
Sbjct: 752 PRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEI 811

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            ++ MI ++  L   K    +LLQ+HDEL+FE+ EE +    + + + M+     +    
Sbjct: 812 LKKVMIKIYSWL-LGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQLE---E 867

Query: 960 VPLKVNIKVSNNWQEE 975
           V L+VN  + N W E 
Sbjct: 868 VELEVNTNIGNTWAEA 883


>gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 882

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 301/974 (30%), Positives = 488/974 (50%), Gaps = 97/974 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA+YA   +  K   +P  A+ GF   L++LL+    E    + A  
Sbjct: 2   KRALLLDVSAMMYRAYYANMNMRTKE--MPTGAVYGFLLTLFQLLKEYEPE----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD       R E+Y +YK+NR   PE LL Q+P +     AFGI  I+I+G+EADD++ +
Sbjct: 56  FDIKRSHLKRTELYAEYKSNRDSAPEDLLKQIPYIEAVLDAFGIQRIKIEGYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +    K+G  VTI++ DKD+ QL+     +Y   KE     E V     + PEK+  L 
Sbjct: 116 LSTKLSKKGIPVTIVTGDKDISQLLDENIEIYLLGKEVLKTREDVKNYIDVYPEKIPDLF 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS D IPG+  IG K A  +L +Y NLE I  N  ++                   
Sbjct: 176 GLIGDSSDCIPGVRKIGPKKAVPMLDKYENLEGIYENIDKL------------------- 216

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                    + I             G  LI  +K  +    ++R     + +        
Sbjct: 217 ---------IEIPGV----------GKTLIEIMKEDKELAFLSRTLAKIEKN-------- 249

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           LD + +       + E       +  +F S   +      EQ  +K  ++  + + Q   
Sbjct: 250 LDFSFSLEDLYFEKKEEALREIFQKLEFKSFLKRL-----EQKEEKEQIKVAEVIPQKKK 304

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +  S  +IVN   I++   +++           + +   + +   +  ++ ++       
Sbjct: 305 SEKSENRIVN--SIEELKAEIKEF------TEEEKIILLYDRL-GLTCTSSNKS------ 349

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              I+I L      +S          L   +K F +       +++K     L + G S 
Sbjct: 350 ---IYIPLFHIGLLESNID-------LEECQKLFFSLKGKLYTYDLKE----LLKLGFSF 395

Query: 484 -RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
            +   D+M+  Y L S ++  D  SI Q +L    ++  K+  +   I+ +S        
Sbjct: 396 QKPVYDMMIA-YHLVSSQTKEDYTSIGQYYLKTIAED-EKTVFAKQKIETLSIDSYGNFL 453

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           ++ S ++      L   L  ++L +V    + P+I V++ ME  GI+ID+   ++ S E+
Sbjct: 454 LKRSQILYSCLEPLEKDLKEKELENVLWETELPLIPVLASMEKQGIKIDRKYFQKYSLEL 513

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           ++ L+ LE+ I+  +GE+FN++SPKQLG+ILF KL  P+G KTKTG + T  + LE ++ 
Sbjct: 514 NEKLVLLEKEIWKEAGEEFNINSPKQLGEILFLKLNLPTGKKTKTG-FSTDVEVLENLSS 572

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
               I  N+LE+R+L+K+K+TY D +P  +     R+HT Y    T+TGRL+S +PNLQN
Sbjct: 573 QGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFDD-RIHTCYHQIGTVTGRLSSSDPNLQN 631

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP+KT+ G +IR+ FI+    KL+S DYSQ+ELR+LA ++K   L + ++   D+H + A
Sbjct: 632 IPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTA 691

Query: 783 AEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            +IF +   E+VS + R  AK INFSIIYG +PF LA +L I   +AA+YIKRYF ++P 
Sbjct: 692 KKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDAAEYIKRYFAQYPR 751

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + ++  +   F  Q+GYVET FGR+   D I+S    ++N  ER A+N  +QG+AA+I +
Sbjct: 752 VAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEILK 811

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           + MI ++  L   K    +LLQ+HDEL+FE+ EE +    + + + M+     +    V 
Sbjct: 812 KVMIKIYSWL-LGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQLE---EVE 867

Query: 962 LKVNIKVSNNWQEE 975
           L+VN  + N W E 
Sbjct: 868 LEVNTNIGNTWAEA 881


>gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
 gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
 gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
          Length = 875

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 318/982 (32%), Positives = 473/982 (48%), Gaps = 113/982 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLT-SPKGEPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL++    +YD +K           K+        
Sbjct: 116 IATFATKTAALGEHVVIISSDKDLLQLMTENIKIYDPLKG----------KY-------- 157

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               +T D +    G      +    L+   G+  + +     I  K             
Sbjct: 158 ----ITEDDVVKKFGTTSDKLREVMALI---GDRSDNIPGVPSIGPKTAS---------- 200

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                L+     V                    +   +L+    + +  T  +     + 
Sbjct: 201 ----SLITQFGSVE-------------------NIFNSLDQVSSVKQRKTLQNSRETALI 237

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              L I    N  +  +      +   + + +    +    +  +  + L   ++    +
Sbjct: 238 SWQL-IGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLDIKINDYKE 296

Query: 361 YPINNDSY-TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              N  +   +I N  ++  + ++   IG     +          K   +A     Q   
Sbjct: 297 IADNKVTEIKEINNANELADFAKEATKIGIFGIYL-------LQHKGANLAFILSLQNQS 349

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              K+   F DL  + ++      T        +     ++   KI +++K         
Sbjct: 350 YIIKISNTFHDLFSYNTK------TNNNWFSDIIFNLLTDKSIKKITYSLKPLLKFYANQ 403

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
              ++  ED+ LM Y L +G S  ++                          ++      
Sbjct: 404 SHDIKAIEDLELMQYALSAGLSQKNL------------------------FKEVLKETWI 439

Query: 540 EHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           E+ I  S  I+  ++ L  +    L   K   +Y  +D P+  ++ +ME  GI +D + L
Sbjct: 440 ENIIIESAKIVINFITLYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYL 499

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTA 654
           KQ+SAE    +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G    K   + T A
Sbjct: 500 KQLSAEFGTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE+++     I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+
Sbjct: 560 EILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQN+PI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N 
Sbjct: 620 SQEPNLQNVPIRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINK 679

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA+ YIK+
Sbjct: 680 DDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTHGEASAYIKK 739

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  + G+ EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG
Sbjct: 740 YFAEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +   
Sbjct: 798 TNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST-- 855

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             N+ VP+   I+  NNW E +
Sbjct: 856 --NMDVPIITEIRAGNNWMEIH 875


>gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
 gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
          Length = 811

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 268/911 (29%), Positives = 443/911 (48%), Gaps = 112/911 (12%)

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
           +Y  YK  R  +PE L  Q+PL++    A GI  +   G+EADD++ T    +EKEG  V
Sbjct: 1   MYEAYKGTRKPMPEELREQVPLMKEMLTAMGIKIVSKAGYEADDLLGTLAVRSEKEGMDV 60

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
           TI+S D+DL+QL +    +            E      V++K+ + P +++ L+AL GDS
Sbjct: 61  TILSGDRDLLQLATEKVMIRLPKTSRGKTTIENFHAAEVLEKYQVTPPQIIELKALMGDS 120

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DNIPGIPG+G KTA  ++ E+G                         E A         
Sbjct: 121 ADNIPGIPGVGEKTATKMIVEFGT-----------------------IENAY-------- 149

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
                       + LE+    +    L+       +++   T + ++       L+    
Sbjct: 150 ------------VHLEEIKPNKARESLREHYDLAELSKALATINTESP------LEYVYE 191

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
           E +   + T        +    + L    +    E T ++ F                  
Sbjct: 192 EARLGNLYTPEAYQLCKQLEFKNLLGRFDTSAVPENTIEQNFF----------------- 234

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
              +    +   +K          +++D    +      + I+          K E  ++
Sbjct: 235 TCSDLGGAEALFKKAAEKNYIGVALLSDKEGVY-----GLGIALT--------KGEIYYV 281

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFED 488
            +    + D          I + LK+  ++     I  ++K    +L   G+       D
Sbjct: 282 PVEGLLTGDY---------ICAALKEIADSTILCSI--DVKS---MLKHVGLEDADHVFD 327

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLS----YTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             +  Y+L+  +SS+    IA+++L      TR ++L         +K SD  +  +A  
Sbjct: 328 TGVAVYLLNPLKSSYTFDDIAREYLDGALLPTRTDLLGKDSLKAAWEKSSDG-LMSYACH 386

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            +         +   L   ++ +VY  ++ P+I  +  ME  GI++  + LK    ++  
Sbjct: 387 LAYTAYATREPIENALKETEMWNVYREIELPLIFTLDSMEKWGIRVKGEELKSYGEKLQV 446

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  LE+ IY+ +GE+FN++SPKQLG ILF K+  P G KTKTG   +TA D+ +    +
Sbjct: 447 RIAELEKLIYEQAGEEFNINSPKQLGVILFEKMGIPGGRKTKTGY--STAADILEKLAPE 504

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            PI+ +ILE+RQL+K+KSTYAD L   I     R+H+ ++   T TGR++S EPNLQNIP
Sbjct: 505 QPIVNDILEYRQLTKLKSTYADGLSAVIEADG-RIHSTFNQTITATGRISSTEPNLQNIP 563

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           ++ +LG+ IR+ F+       + ADYSQIELR+LAH++    L Q +  + DIHR+ A++
Sbjct: 564 VRMELGRLIRKVFVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAYREAEDIHRLTASQ 623

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F V  ++V+   RR+AK +NF I+YGIS F L+  L I R EAA+YI++YF  +P I  
Sbjct: 624 VFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEYIEKYFETYPKIKG 683

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +++      ++ GYV T+ GRR    E+ S     R+  ER A+N+PIQG+AADI + AM
Sbjct: 684 FLDGLVADGKEKGYVSTMLGRRRPIPELKSGNFMQRSFGERVAMNSPIQGTAADIIKIAM 743

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
             V++ L++  L ++++LQ+HDEL+ E  +EE+ T S+I+   M+ A    ++L V L V
Sbjct: 744 NRVYQRLKEEGLQSRLVLQVHDELLIETKKEEVETVSRILEEEMKGA----VHLSVELDV 799

Query: 965 NIKVSNNWQEE 975
           ++   N+W E 
Sbjct: 800 DMHEGNSWYEA 810


>gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322]
 gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322]
          Length = 837

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 277/939 (29%), Positives = 443/939 (47%), Gaps = 114/939 (12%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           + +N  ++ + +H  V FD    TFR E Y +YKA R K P     Q+P +R   +  G+
Sbjct: 1   MFENVMQKEMPTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGV 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKI 163
              E+  +EADDII T     +K+ F V ++S D+DL QL + T  +  TVK     E  
Sbjct: 61  KYYELPNYEADDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESY 120

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
             EH+ +K+            LT   I ++ G+               G+  + +   ++
Sbjct: 121 TPEHIAEKYD----------GLTPKQIIDMKGLA--------------GDTSDNIPGVTK 156

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           I +K   + + +Y                          + E+ +  +     + L   K
Sbjct: 157 IGEKTAIKLLKQYGSV---------------------EGVYENIDEMKKSKMKENLINDK 195

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
               ++        N  PV +++     +G  +E  +     +   QF       +K++ 
Sbjct: 196 EQAFLSKRLATIEVN-APVEVNVEDLAYEGKNLEKLVPFYKEMDFKQF------LAKLDI 248

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
            + P               + +  +  + +    + +   +      +  +     +   
Sbjct: 249 TEEP-------------VEMEDILFEVVEDQLTNEMFTDDM------ALYVEMMEDNYHT 289

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           S  +   ++  + K   +     +F                           +  +E   
Sbjct: 290 SPIVG--LAWGNNKKMYTTNNLAVFES--------------------QPFIDWLMDETRK 327

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRK 518
           K  ++ K   + L+RY   M G   D++L +Y+LD+  ++ DI  +AQ +    +     
Sbjct: 328 KNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEA 387

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
              K  K  +P D+        H       I  L   L  +L  +    ++ +++ P+  
Sbjct: 388 IYGKGAKKGLPEDE---EVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSR 444

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           ++  MEITGI++D   LK++  E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+ 
Sbjct: 445 ILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMG 504

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KTKTG   +TA D+ +      PI+ +IL +RQ++KI+STY + L   I    + 
Sbjct: 505 LPVIKKTKTGY--STAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNK- 561

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRI 757
           +HT Y    T TGRL+S++PNLQNIPI+ + G+KIR AF+       + S+DYSQIELR+
Sbjct: 562 IHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRV 621

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFR 816
           LAHI+    L + F    DIH   A  +FGV   E V+P MRR AK +NF I+YGIS + 
Sbjct: 622 LAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYG 681

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L+  L I R +A  YI  YF ++PG+ +Y+E+     +  GYVET++ RR +  +INS  
Sbjct: 682 LSQYLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRN 741

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            ++R+  ER AIN PIQGSAADI + AMI + + L++ KL   MLLQ+HDELVFEVPE E
Sbjct: 742 FNLRSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESE 801

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +   +Q++   ME A    ++L VPL  +      W E 
Sbjct: 802 LEQLNQLVKEVMEHA----VSLHVPLITDSSWGKTWYEA 836


>gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
          Length = 882

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 302/974 (31%), Positives = 488/974 (50%), Gaps = 97/974 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA+YA   +  K   +P  A+ GF   L++LL+    E    + A  
Sbjct: 2   KRALLLDVSAMMYRAYYANMNMRTKE--MPTGAVYGFLLTLFQLLKEYEPE----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD       R E+Y +YK+NR   PE LL Q+P +     AFGI  I+I+G+EADD++ +
Sbjct: 56  FDIKRSHLKRTELYAEYKSNRDSAPEDLLKQIPYIEAVLDAFGIQRIKIEGYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +    K+G  VTI++ DKD+ QL+     +Y   KE     E V     + PEK+  L 
Sbjct: 116 LSTKLSKKGIQVTIVTGDKDISQLLDENIEIYLLGKEVLKTREDVKNYIDVYPEKIPDLF 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L GDS D IPG+  IG K A  +L +Y NLE I  N  ++                   
Sbjct: 176 GLIGDSSDCIPGVRKIGPKKAVPMLDKYENLEGIYENIDKL------------------- 216

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                    + I             G  LI  +K  +    ++R     + +        
Sbjct: 217 ---------IEIPGV----------GKTLIEIMKEDKELAFLSRTLAKIEKN-------- 249

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           LD + +       + E       +  +F S   +      EQ  +K  ++  + + Q   
Sbjct: 250 LDFSFSLEDLYFEKKEEALREIFQKLEFKSFLKRL-----EQKEEKEQIKVAEVIPQKKK 304

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +  S  +IVN   I++   +++           + +   + +   +  ++ ++       
Sbjct: 305 SEKSENRIVN--SIEELKAEIKEF------TEEEKIILLYDRL-GLTCTSSNKS------ 349

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              I+I L      +S          L   +K F +       +++K     L + G S 
Sbjct: 350 ---IYIPLFHIGLLESNID-------LEECQKLFFSLKGKLYTYDLKE----LLKLGFSF 395

Query: 484 -RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
            +   D+M+  Y L S ++  D  SI Q +L    ++  K   +   I+ +S        
Sbjct: 396 QKPVYDMMIA-YHLVSSQTKEDYTSIGQYYLKTIAED-EKIVFAKQKIETLSIDSYGNFL 453

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           ++ S ++      L   L  ++L +V    + P+I V++ ME  GI+ID+   ++ S E+
Sbjct: 454 LKRSQILYSCLDSLEKDLKEKELENVLWETELPLIPVLASMEKQGIKIDRKYFQKYSLEL 513

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           ++ L+ LE+ I+  +GE+FN++SPKQLG+ILF KL  P+G KTKTG + T  + LE ++ 
Sbjct: 514 NEKLVLLEKEIWKEAGEEFNINSPKQLGEILFLKLNLPTGKKTKTG-FSTDVEVLENLSS 572

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
               I  N+LE+R+L+K+K+TY D +P  + K   R+HT Y    T+TGRL+S +PNLQN
Sbjct: 573 QGFQIATNLLEYRKLAKLKNTYVDPIPKMV-KFGDRIHTCYHQIGTVTGRLSSSDPNLQN 631

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP+KT+ G +IR+ FI+    KL+S DYSQ+ELR+LA ++K   L + ++   D+H + A
Sbjct: 632 IPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTA 691

Query: 783 AEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            +IF +   E+VS + R  AK INFSIIYG +PF LA +L I   +AA+YIKRYF ++P 
Sbjct: 692 KKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDAAEYIKRYFEQYPR 751

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + ++  +   F  Q+GYVET FGR+   D I+S    ++N  ER A+N  +QG+AA+I +
Sbjct: 752 VAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEILK 811

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           + MI ++  L   K    +LLQ+HDEL+FE+ EE +    + + + M+     +    V 
Sbjct: 812 KVMIKIYSWL-LGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQLE---EVE 867

Query: 962 LKVNIKVSNNWQEE 975
           L+VN  + N W E 
Sbjct: 868 LEVNTNIGNTWAEA 881


>gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470]
 gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470]
          Length = 858

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/975 (28%), Positives = 462/975 (47%), Gaps = 122/975 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L +VDGSS +YRAF+  P L   + G+P NA+ GF NML+ + +N   E    + AV
Sbjct: 2   EKKLVVVDGSSLLYRAFFGLPPL--SYHGIPTNAVMGFLNMLYDIYKNFDPE----YMAV 55

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E+Y +YKA R   P  L+PQ  L+R A +  G    E+ G+E DDI+ T
Sbjct: 56  SFDKNKQTFRSEVYKEYKATRKPAPPELVPQFALIREALRTLGAAVYEVDGYEGDDILGT 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                EKE   V I++ D+D +QL +  T +Y                  I    +  + 
Sbjct: 116 LAARYEKE-LPVFIVTGDRDALQLATKDTTVY------------------ITQRGVSQMA 156

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           A+T +++    GI          L+   G+  + +     + +K                
Sbjct: 157 AMTPEAVVEKYGITPRQVIDMKALM---GDTSDNIPGVPGVGEKT--------------- 198

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                                      +L+S  + L+   L   V          +    
Sbjct: 199 -------------------------AAKLLSQYQTLD--NLYGHVGEIKGAVGKRLA-AN 230

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            ++     +   I+T++  +        ++L +    ++ E+  +      L++++    
Sbjct: 231 KELAYLSYRLATIKTDVPFE--------AALEEMKQPVHFEEMMEFFHRLGLERIADRYS 282

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA-FHSKPIAIAISTLDQKDDTSF 422
               + ++         V K + I +A+ K+    +   F  K +  ++    +     +
Sbjct: 283 TLPRFRELA--------VSKKKEIQAAAVKLEEFPLHPDFTGKEV--SLVLHMEGKAPFY 332

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYGI 481
             +   +    H  +    +       L+  K          I  + K          GI
Sbjct: 333 HADLAVVGYGNHVYRALPERFEDVCMALAAAKHV--------IVQDSKSIYESDFPTEGI 384

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
               F D+ L+SYVL+  R+++ ++ +A+ +              + P+        +E 
Sbjct: 385 ---PFYDMTLVSYVLEPTRTTYPLSYMAELF-------------GTSPVFPDHLDTEEEK 428

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           ++     +L L+      +    +  ++E+++ P+  V+++ME  GI  DQ   + V  E
Sbjct: 429 SVCICGFLLSLYATSLEHMKSNGVQSLFEKIENPLAAVLAEMEKAGIATDQKRWEAVCHE 488

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +      L   IY+ +GE+FN++SPKQLG ILF K+  P+G KTK G   +TA D+ ++ 
Sbjct: 489 LKVQERKLLSLIYEAAGEEFNVNSPKQLGVILFEKMGMPAGKKTKNGY--STAADVLEML 546

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               P +K+ILE+R +SK+ STY ++LP  I   T R+HT ++   T TGRL+S +PNLQ
Sbjct: 547 AKSYPFVKDILEYRTISKLISTYLEALPLLIRPETGRIHTSFNQTVTATGRLSSSDPNLQ 606

Query: 722 NIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIP++T  G++IR  F+  P     IS+DYSQ+ELR+LAH++    L + F N  DIHR 
Sbjct: 607 NIPVRTAEGRQIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRR 666

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AAE+ G+  E+V+ + R HAK +NF IIYGIS F LA QL I R EA  YIK+YF R+P
Sbjct: 667 TAAEVLGIPFEEVTSEQRSHAKAVNFGIIYGISDFGLANQLGISRGEAGTYIKKYFERYP 726

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            IH +++      +++G  +T+FGR     +I S   + R+  ER A+N PIQG+AADI 
Sbjct: 727 YIHAFMKSMVEDAQESGRAKTLFGRYRELPDIRSSNFNRRSFAERTAMNTPIQGTAADIM 786

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI V + +++    +++LLQ+HDELV E   EE      ++  +ME      + L+V
Sbjct: 787 KLAMIEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKENLKTLLKETMESV----VELKV 842

Query: 961 PLKVNIKVSNNWQEE 975
           PL  ++    NW E 
Sbjct: 843 PLIADVHEGKNWAEA 857


>gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92]
 gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92]
          Length = 879

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 276/974 (28%), Positives = 442/974 (45%), Gaps = 102/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA P L +  DG P   I+GF N +  L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYAMPNL-KNRDGKPSGMISGFANFILNL----KNEFPSDYIIFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            +    T R++I  DYKANR + P  L  QLP+     +  G+ AI  +G+EADDIIAT 
Sbjct: 57  LEGKGETLRHKIAGDYKANRSEAPAALKEQLPVCIEMIEKMGLCAISREGYEADDIIATA 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             +A+ +   V +++ DKDL QL+      +Y  + + + D    ++K+G+ PE++    
Sbjct: 117 VRLAKSQDVFVRVVTHDKDLYQLIEDGKVSIYSPLSKIEHDTASCVEKYGVRPEQIRDFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           A+ GDS DNIPG+ GIG   A  LL E+G+L                E I E     R  
Sbjct: 177 AIAGDSSDNIPGVKGIGAVGAKKLLAEFGSL----------------EAIYENLALVR-- 218

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                                      R    L A   +  +++  TT   DA ++    
Sbjct: 219 -------------------------NERTREMLAAGRESAFLSKRLTTLFDDAPDMV--- 250

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                      A      ++  +K +      D +  + S Q   +    +L   +    
Sbjct: 251 ---------DFADAPFPQQNPLLKVADMLREFDLSRVLKSLQNSGENAEFKLGFNAN--- 298

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                  + +   I+  +  +      +F   T  +D   +K +  +    D+ +     
Sbjct: 299 ------LLTDESAIESLLANITEETIIAFDTETTDIDTQSAKLVGFSFCFNDE-NAYYVP 351

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGIS 482
           V   ++        D                   +      +G N+KYD  +V    G+ 
Sbjct: 352 VAHSYLGAPKQVGTDFAAWAVG------------QIYKGCVVGQNLKYDFKVVKRNLGLE 399

Query: 483 MR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
               F+D M+++++ D  ++   + ++A++  +Y   +     +       +      ++
Sbjct: 400 PPVKFKDTMVLAWLADPSQAV-GMDALAKRLYNYDTIKFEDVVRRGETFASVPLENAAKY 458

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +      L+   L+ +    + P I  +  ME  GI I++  ++ +  +
Sbjct: 459 AAEDAWITLKFYKSFL-NLLDPALIELANAHEFPFILTLFDMESVGIAINKKKMQNLILQ 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               +  L   IY+L+GE FN++S KQLG +LF  LK P   KTKTG     A   E I+
Sbjct: 518 NDAKIKILTSEIYELTGENFNINSVKQLGAVLFEHLKLPVKKKTKTGYSTDEAVLAELID 577

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR-TQRVHTFYSLASTMTGRLASLEPNL 720
              + +I  +LE+R+L K++STY + L N  NK    R++T +    T TGRLAS  PNL
Sbjct: 578 A--HLVIAKLLEYRELYKLQSTYCEPLLNLANKDENSRIYTNFVQTGTSTGRLASKNPNL 635

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP +  L + +R  F +      +  DYSQIELR+LAH ++   L + FEN  DIH  
Sbjct: 636 QNIPARGSLAKDVRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALLKAFENDEDIHAR 695

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG        Q R  AK+INF +IYG+   +LA Q+ I R+EA +YI+RYF  FP
Sbjct: 696 TAISIFG----SADGQNRAVAKSINFGLIYGMGSSKLAGQVNISRAEAKEYIERYFKAFP 751

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I  ++E  K   +  G+V T+ GR+  +D  N+       + ER A+N   QGSAADI 
Sbjct: 752 TIKGFLEGIKTAAKNEGFVRTLLGRKRFFDFTNAT-PMQTAMYEREAVNTIFQGSAADII 810

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ +        +  KMLLQIHDEL+FEV +E      +     M++       L V
Sbjct: 811 KLAMVKIRPLC---SVRAKMLLQIHDELIFEVADEHAAEFGEAAQKIMQE----IYKLNV 863

Query: 961 PLKVNIKVSNNWQE 974
           PLK ++ V+ NW E
Sbjct: 864 PLKTSLNVAKNWGE 877


>gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132]
 gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
          Length = 888

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 273/977 (27%), Positives = 430/977 (44%), Gaps = 101/977 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            ++ L+L+DG++ +YRAFYA   LSR  DG P NAI    N + ++L N  K+    H  
Sbjct: 10  DKDPLYLIDGTALLYRAFYARADLSR-SDGFPTNAI----NTVMRVLMNLLKDEDPLHVG 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            + D    TFRN +Y  YKANRP +PE L+ Q+  VR      GIP +  +G EADD I 
Sbjct: 65  FVMDGKGPTFRNALYDGYKANRPAMPEPLVEQVEPVRRGVGLLGIPLLVSEGVEADDCIC 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--YDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +     + E   V I++TDKD+ Q +     +      KE    ++   +  G+ P    
Sbjct: 125 SLADRYKAE-RPVIILATDKDIKQCLDDQVVMVSQMGRKETIHTLDSFREAEGMEPATWP 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYG-NLENILINASRIKQKKRRENILEYAET 239
             QA+ GDS DNIPGIPG+G  TA  +    G  LE +  N + +   K R  +    + 
Sbjct: 184 DFQAVIGDSADNIPGIPGVGPVTARKIFAATGPTLEELRDNLASLPD-KLRAKVEPELDQ 242

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
               R+L  ++T+                  + + F   L+   L        + +   +
Sbjct: 243 VFTYRQLTRMKTNCC---------------EQALDFF-RLQTPDLSALNGYFEEYELRGL 286

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           + ++        K    ET              SL   T                     
Sbjct: 287 QQLLPRNTAAAPKAPLAETVKQAAKATPKDGMLSLFGDTMAAP----------------- 329

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
                        + K+ +Q ++        +     D +     + + +          
Sbjct: 330 -------------DKKEPEQPLE-------VNVAATVDDLPDLGGEDVGLTFEDDAFFLG 369

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +                        T  +   L+    +               +L   
Sbjct: 370 VNGAEYRYAGPAGELVRAVQHASIIATPSVQDLLR---ADPA----------WGYILSSQ 416

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
                 + D+ L +Y+LD    ++  A + Q      R E  ++ +   P  +       
Sbjct: 417 ------WFDLSLAAYLLDPESRNYTWARLRQSMFQDGRPEFAEAARGLHPHSQGL----- 465

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
                     L     +R ++    L  +   L+ P+I V+  ME  GI ID    +   
Sbjct: 466 --------AALAYMTGIRGQVEGAHLNTLMRELEIPLIPVLVAMERAGISIDDAAFQAFL 517

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            +++  L  L  +I   +GE+FN+ S +QL  +LF +L   +G+KT TG   T  Q LE+
Sbjct: 518 NDVNAQLDELTRSIIGYAGEEFNIRSSQQLAVVLFDQLGIKAGSKTSTGLRSTANQVLEK 577

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           I    +PI+  +LE+R L K++STY + LP  + +   R+HT ++  ST TGRL+S +PN
Sbjct: 578 IR-DQHPIVDAVLEFRMLEKLRSTYLEPLPKMVGEDG-RLHTHFNQLSTATGRLSSSQPN 635

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+   G ++R  F +     L +ADYSQIELR+LAH +K   L   F +  DIH 
Sbjct: 636 LQNIPIRGVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAFRHDEDIHA 695

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AA I   +I  V+P  RR AKTINF +IYG+   +LA +L+I ++EA ++ ++YF + 
Sbjct: 696 RTAALIHDKDISAVTPDERRGAKTINFGLIYGMGVQKLARELQIKQTEAQEFTEKYFAKM 755

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +  Y +        +G+V T+ GRR    E++S  + +     R A+N  IQGSAADI
Sbjct: 756 ATLKAYYDTVVKDAETHGFVTTLAGRRRLLPELHSRNNQLSAQARRQAVNTVIQGSAADI 815

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+  HK     +L  +++LQ+HDEL+ E PE  I  A   ++  M+        L 
Sbjct: 816 IKMAMVQAHKDKRLRELGAQLILQVHDELIIEAPEANIKEAGGRLLEIMQTVA----KLD 871

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPLKV++ V  NW E +
Sbjct: 872 VPLKVDMGVGKNWAEAH 888


>gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
 gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
          Length = 898

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 256/992 (25%), Positives = 431/992 (43%), Gaps = 113/992 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  E  + L+DG S  +R+F+A P    R   G   NA+ GF N L +L+ + +     +
Sbjct: 1   MT-EKTMLLLDGHSMAFRSFFALPADSFRTAQGQYTNAVHGFINTLLRLINDYK----PT 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD P  TFR   Y +YK  R K PE    Q+ +++      GI  + +  +EADD
Sbjct: 56  HIAVAFDLPGGTFRTREYGEYKGGRAKTPEEFKGQIGVIQEVLNVMGISWLTVDDYEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPP 176
           I+AT +   E EG  V I S DKD  QLVS  T +   +   ++   +   V ++ G+ P
Sbjct: 116 IVATLSARGEAEGMNVFIASGDKDSYQLVSDLTSVVYPMPRSQMLLLNPAGVEERTGVRP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++   L AL             +G K             + L     +  K   + + +Y
Sbjct: 176 DQYSDLAAL-------------VGEKA------------DNLPGVPGVGPKTAAKWLNQY 210

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
               +L            +    E   ++   G  L   ++ +   +++N++    D   
Sbjct: 211 GGLGQL------------LDHAEE---IKGKAGQSLRDNIEQVRLNRVLNKLVRDLDIVP 255

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              + V + +                     T  F++L                   R +
Sbjct: 256 NLDQLVPMGVERQA-----------LHELFDTLDFTTL-------------------RTR 285

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L++ PI   S   +      +     L      +F          H+ P AIAI    +
Sbjct: 286 VLAELPIREGSEDVVEEADKPEARDVTLWEGSCGAFLAE-------HAGPYAIAIEGNGK 338

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               S          +            +++E  +       + +  KIGH++K      
Sbjct: 339 PGAGSVARFAC---AARDGYVFGGEPALISEEDSAAFSALLSDPNVGKIGHSMKVQIHAW 395

Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G ++ G   D  + +Y+L   + ++D   + Q++L+    ++    + ++ I    D
Sbjct: 396 LGEGYTLAGIVGDTEIDAYLLHPDQRTYDFTDLVQRYLAI---DLGGGAQDTLGIG--LD 450

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            ++ +     +     L       L  E+       ++  + DV+++ME  GI +D D L
Sbjct: 451 GEIVDDLAARAVATHDLRDAFARALETEEQSDALREMELRVCDVLARMEQRGIAVDADQL 510

Query: 596 KQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
            ++ A+    +       ++  G+   NLSSPKQL  +LF +L  P   KTK+G      
Sbjct: 511 ARLHADFDARVNQAATQAWEAIGDSSVNLSSPKQLQAVLFDQLGLPKTKKTKSGYTTNAD 570

Query: 655 QDLEQI----------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
              + +                 +  +L  R   K++ +  + L   +    QR+ T Y 
Sbjct: 571 ALEQLLVKISMREDDQALAGQNFLTGLLAHRDAIKLRQS-VEGLQRSL-GDDQRIRTTYQ 628

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAK 763
                TGRL+S +PNLQNI  +T+ GQKIR  F+       L++ADYSQIE+R++AH++ 
Sbjct: 629 QTVAATGRLSSTDPNLQNIHARTEEGQKIREVFVPGDGYDYLMTADYSQIEMRLMAHLSG 688

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F    D+H  VA+ +FGV   +V+P  R   K +++ ++YG+S F L+ QL+I
Sbjct: 689 DAELIVAFNAGADLHNYVASRVFGVAESEVTPAQRSKIKAMSYGLVYGLSAFGLSAQLKI 748

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           P  EA + +  YF RF  + EY++      R++G+ +T+ GRR +  E++S    +R   
Sbjct: 749 PVPEAQNLMDGYFSRFGRVKEYLDGLVAQARKDGFTQTLLGRRRYLPELSSTNRQVRESA 808

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+NAPIQGSAADI + AM++V + L   +L++++LLQ+HDELV EV   E      I
Sbjct: 809 ERMALNAPIQGSAADIIKIAMLNVERELAAAQLSSRVLLQVHDELVLEVAASEAEQVEAI 868

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +   M  A      L VPL V + +  NW++ 
Sbjct: 869 VREQMGNA----WELSVPLSVGVGIGRNWRDA 896


>gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
 gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
          Length = 870

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 292/972 (30%), Positives = 449/972 (46%), Gaps = 107/972 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S I RAFY   LLS K DG   NAI GF N+L K    +R E+     AV F
Sbjct: 2   KLLVLDGNSIINRAFYGIRLLSTK-DGQYTNAIVGFLNILNK----ARDETAPDAVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D PA TFR+  Y  YKA R K+P+ L  QLP+++   +  G+P +E +GFEADDI+ T  
Sbjct: 57  DLPAPTFRHLSYDGYKAGRKKMPDELASQLPVLKDLLRYMGLPILEAEGFEADDILGTEA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           Y   K G A  +++ D+D  QLV P+  +                K G P   +    A+
Sbjct: 117 YACAKRGDACVLLTGDRDSFQLVGPSATVRLAST-----------KAGQPVTTLYDEAAI 165

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
                    G+          L+   G+  + +   + + +K                  
Sbjct: 166 RE-----TYGVEPRQMIDVKALM---GDTSDNIPGVAGVGEKTA---------------- 201

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           L ++RT   +     HL  E    P L + L+A + +  ++R       DA  +E     
Sbjct: 202 LSLIRTYGTLDEVYAHLEDESI-RPALRAKLRAGKESAYMSRKLAKISTDAP-VETDPGA 259

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
           +   +    A+   + R    K  +   ++           PQK                
Sbjct: 260 LAGAKGDSHALALLMARLELFKLMEKMGVTGGAPAEADAPGPQKA--------------- 304

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
              T      D    +  L       F                IA               
Sbjct: 305 ---TPCTAAVDGSTLLAALRAEAPVDFACRYTD----DGLIDGIAF-------------- 343

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-- 483
           T    +++  + ++ G +       +            K  H+ K       R G ++  
Sbjct: 344 TREYGVTLARAGETAGFDAFLAAFFAD-------GSITKRTHDSKPVYAAALRQGFTVSD 396

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
              +D ML+ Y+L+   SS+  A + +++  +               + + D       +
Sbjct: 397 AEPDDTMLLGYLLNPLASSYAPARLCEEYTVFPPA-----------TENVPDG--FSGCV 443

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           + +  +  L  +L  KL       +Y  ++ P+  V++QME  G  +D   +      + 
Sbjct: 444 DTALAVRALAPVLLRKLTENGQEKLYREVELPLARVLAQMEHAGFLVDAAGIAAYGETLG 503

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           K L ++E+ I D  G  FNL+SPKQLG+ LF KL  P G KTKTG W T+A  L+++  G
Sbjct: 504 KKLAAIEQEIVDAVGYPFNLNSPKQLGEALFVKLGLPHGKKTKTG-WSTSADVLDKLR-G 561

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +P I  +L +R+LSK+KSTY D L   I     R+H+ ++   T TGR++S EPNLQNI
Sbjct: 562 AHPAIDALLGYRKLSKLKSTYTDGLLKVIAPDG-RIHSSFNQVETRTGRISSTEPNLQNI 620

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P+++  G+++RR F++ P   L+ ADYSQIELRILAHIA    +   F N  DIH + A+
Sbjct: 621 PVRSAEGRELRRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTITAS 680

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           ++FG+  E V+P MR  AK +NF I+YGI  F L+  + +   EA  YIK Y  +F G+ 
Sbjct: 681 QVFGMPPEYVTPIMRSRAKAVNFGIVYGIGAFSLSQDIGVSVKEADSYIKGYLQKFSGVR 740

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +Y+E+      + GYVET+FGRR    E+ S   ++R   ER A N PIQG+AADI + A
Sbjct: 741 DYMERVIREAHEKGYVETLFGRRRVLPELLSSNHNMRAFGERVARNTPIQGTAADIIKIA 800

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+ V   LE  ++ + ++LQ+HDEL+ E PE+E   A QI+   ME A     +LRV L+
Sbjct: 801 MVRVRDRLEREQMQSALILQVHDELIVEAPEDEAARAGQILEEEMEGAA----SLRVRLE 856

Query: 964 VNIKVSNNWQEE 975
            ++   + W + 
Sbjct: 857 ADVHTGHTWYDA 868


>gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 866

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 280/980 (28%), Positives = 443/980 (45%), Gaps = 127/980 (12%)

Query: 1   MQ-KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M+     + L+DG    +RAFYA P L    DG P NA+ GF NM  ++  + R + I  
Sbjct: 1   MEMSGKKILLIDGHGIAFRAFYAIPEL-NAPDGTPTNALVGFFNMFARVRHDQRPDEIY- 58

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
                FD    TFR+ +YP+YKA R   PE    Q+PL+       G+  +E    EADD
Sbjct: 59  ---AAFDMKEPTFRHRLYPEYKATRRPTPEEFKIQVPLLHEMLPLLGVHIMERPSVEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           +I +        G  V I+++DKD+MQ++ P   +    K     E+ D+ H  +K+G P
Sbjct: 116 LIGSAAVQFASRGDEVLILTSDKDIMQVLRPGVKILRPGKGVSSFEEYDVPHFTEKYGFP 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+ MV   +L GDSIDNIPG+PG+G KTA+ LLQ YG++E I+ +A  +K          
Sbjct: 176 PDTMVDYLSLMGDSIDNIPGVPGVGEKTASKLLQSYGSIEGIMEHAGELK---------- 225

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
                                             P L   ++      + NR  T   CD
Sbjct: 226 ----------------------------------PALQKKIEEHGAQAVANRKLTRLKCD 251

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                    D++   +K  A + E       +     +        + ++ P        
Sbjct: 252 E--------DLSEFTSKEAAADLEAFGAFCARLGMKKAAESLGVTASQKERPAADPPAEA 303

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
            + S     +D    + +   I   +  +      +  +                     
Sbjct: 304 ARPSPVSTGDDFGEAVPSAAAIP--LDTILCAPRIALDLEESG----------------- 344

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                + K ET+     +  + D +       E+   L +  +N     +  + K    +
Sbjct: 345 APVPYTIKEETLQSRRVILAAPDGSWWQGTLAELAPRLDELLDN---RVVCLDAKALCYL 401

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           + R    + G  D+    Y+L     S+DI+                     I ++    
Sbjct: 402 MERP--RLGGLWDVKTAWYLLHPDLESYDIS-------------------KEIGLELSPG 440

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                     +  +L +   +  K+  + +  V   +D P+I  +  ME  GI++D++ +
Sbjct: 441 ---------RALRLLAIARSMEEKIAAQNMTRVMNEIDLPLIPSLIGMERRGIRLDREKM 491

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
             +S E+ + L ++ E +Y+ +G + NL+SPKQ+G++LF KL  P   KTKTG + T   
Sbjct: 492 LALSRELERQLNAITEKVYEAAGCEINLNSPKQIGELLFEKLGLPVVKKTKTG-YSTDVS 550

Query: 656 DLEQINC---GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            LEQ+         I   +LE+R+L K+ S +   L +          TF SL  T TGR
Sbjct: 551 VLEQLREICGARCEIPGQLLEYRELQKMASGFVQPLLSAAGGDGLIHSTFESLT-TGTGR 609

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S +PN+QN+P  +  GQ+IR   I   P     +ADYSQIELR+LAH++    L ++F
Sbjct: 610 LSSRDPNMQNLPTYSGWGQRIRECLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIF 669

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  DIH   AA IFG+  + V+ ++RR AKT++F +IYG+S F LA++L   R+ A   
Sbjct: 670 NSDRDIHTETAAMIFGLPADAVTKELRRSAKTVSFGLIYGMSVFGLASRLGTDRNTAFQI 729

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF   PG+ EY+E +K    + GY  T+FGRR   DEI +   + ++  +R AINAP
Sbjct: 730 MDAYFAALPGVREYMETSKKKSLEFGYTSTLFGRRRPMDEIATGNQT-KDHQKRVAINAP 788

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADIT+ AM  V        +A  M+LQ+HD +V E P ++    +  +   ME A
Sbjct: 789 IQGTAADITKIAMNKVAAHFAGRDVA--MVLQVHDSIVCECPHDQAEQTALELSQVMESA 846

Query: 952 CLPKINLRVPLKVNIKVSNN 971
               ++L VPLK    V  +
Sbjct: 847 ----VHLSVPLKTERTVGTS 862


>gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
          Length = 921

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 324/1004 (32%), Positives = 482/1004 (48%), Gaps = 111/1004 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLT-SPKGEPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+ IYP+YKANRP  PE L+ QLPLVR        P +E  G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHYIYPEYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL+S    +YD ++ + I  + V+KK+        
Sbjct: 116 IATFATKTAALGENVVIISSDKDLLQLMSENIKIYDPLRGKYITEDDVVKKF-------- 167

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                 G + D +  +          L+   G+  + +     I  K             
Sbjct: 168 ------GTTSDKLREV--------MALI---GDRSDNIPGVPSIGPKTAS---------- 200

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                L+     V                    +   +L+    + +  T  +   A + 
Sbjct: 201 ----SLITQFGSVE-------------------NIFNSLDQVSSVKQRETLQNSREAALI 237

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              L I    N  +  +      +   + + +    +    +  +  + LF  ++     
Sbjct: 238 SWQL-IGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRAENLFDIKINDHKD 296

Query: 361 YPINNDSY-TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              N  +   +I N  +++ + +  E IG     ++    D        +A     Q   
Sbjct: 297 IVDNKVTEIKEISNKLELENFAKDAEKIGIFGIYLLQHKGDN-------LAFILSLQNQS 349

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              K+     DL  + ++++             +     ++   KI +++K         
Sbjct: 350 YIIKISNTSHDLFSYNAKNNND------WFSDIIFNLLADKSIKKITYSLKPLLKFYANQ 403

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY------TRKEILKSRKSSIPIDKI 533
              +   ED+ LM Y L +G S  ++   A K  +        R+E     + S    K 
Sbjct: 404 SHEITAIEDLELMQYALSAGLSQKNLFEEALKEDNRPLSKLAYREEFKGDTERSTAAYKS 463

Query: 534 SDSQVQ----------------EHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLD 573
                                    I  S  I+  ++ L  +    L   K   +Y  +D
Sbjct: 464 VREDASTGSTSKLPLEVEFGKRPIVINESARIVANFISLYKQNILELKDNKAFRLYSDID 523

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+  ++ +ME  GI++D + LKQ+S E    +L LEE I+ LSG KFN+ S KQLG+IL
Sbjct: 524 LPICFILDKMEKVGIKVDANYLKQLSTEFGAEILKLEEEIFALSGTKFNIGSLKQLGEIL 583

Query: 634 FTKLKFPSGA-KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           F K++ P G    K   + T A+ LE+++     I   +L WRQL+K+K+TY DSLP  I
Sbjct: 584 FEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQI 643

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +  T RVHT +   ST TGRL+S EPNLQN+PI++  G KIR+AFI+    KLISADYSQ
Sbjct: 644 DNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYKLISADYSQ 703

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRIL+HIA I  L Q F N  DIH   A +IF +   +++ + RR AK INF IIYGI
Sbjct: 704 IELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTNEHRRKAKAINFGIIYGI 763

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA QL +   EA++YIK+YF  + G+ EY+E+TK F   NGYV   FGR+     I
Sbjct: 764 SAFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVTNFFGRKCFVPLI 823

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           +  K  ++   ERAAINAPIQG+ ADI + AMI++ + +E  KL T+++LQIHDEL+FE 
Sbjct: 824 HDKK--LKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEA 881

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           P +E+     II   ME       N+ VP+   I+  NNW E +
Sbjct: 882 PIDEVEIIIPIIKKIME----YSTNMDVPIITEIRTGNNWMEIH 921


>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 686

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 219/722 (30%), Positives = 351/722 (48%), Gaps = 66/722 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRAF+A P L+ K +G P  A+ G  NML  L+         SH AV
Sbjct: 6   QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP I I+G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +G  V I + DKD+ QLV+    L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LAVQAANDGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD+ DNIPG+ G+G KTA  LLQ  G+L+ I  N  ++        K     +    
Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS  L  ++TDV + +  E L+++      L+      EF + +N V    +    
Sbjct: 241 DAADLSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDANPVTQ 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           N                                    +++              +E  Q 
Sbjct: 301 NS-----------------------------------AEKIPNNYQATVSAPQAVETEQT 325

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------ 411
            ++  I+   Y  +     +Q W++K+  +   +    TD +D+  +  + I+       
Sbjct: 326 FAKVEIDRSRYETVTTMAQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGISFGLANGE 385

Query: 412 -STLDQKDDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFL 463
              +         +E    DL    ++       +           L  LK   E+    
Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVK 445

Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519
           KIG NIKYD  +   +G+ + G   D ML SY L+S    H++  +A ++L +     +E
Sbjct: 446 KIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNST-GRHNMDELADRYLGHKTIEFEE 504

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMID 578
           I    K+ +  DKI+     ++A E+++V ++L  +L P+L     L+ ++  ++ P+++
Sbjct: 505 IAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVE 564

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+S++E  G+ ID + L   S EI + L  LE+ ++  +GE FNL+S KQL +ILFTKL 
Sbjct: 565 VLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAGEIFNLASTKQLQEILFTKLG 624

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT  G   T  + L+++    + + K ++E R LSK+KSTY D LP  IN++T R
Sbjct: 625 LPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGR 684

Query: 699 VH 700
           VH
Sbjct: 685 VH 686


>gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
          Length = 888

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 265/977 (27%), Positives = 459/977 (46%), Gaps = 96/977 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L ++D  S IY+ F+    +     G+  NA+ GF N++ KL+ + +      +   
Sbjct: 2   KKKLVIIDAYSIIYKCFFGVRPMH-SPKGISTNAVYGFLNIILKLISDEKPN----YLYA 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD     FR++ Y DYKA R  +PE L  Q+P +     A  I ++++  +EADDII +
Sbjct: 57  AFDKGHKNFRHDKYADYKAGRQSMPEELREQIPYIERLLDAANIISLKVDDYEADDIIGS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            + +A+KEG    +I+ D+D  QLVS  T +  + +                   +  ++
Sbjct: 117 VSEVADKEGIDTVVITGDRDSFQLVSEHTKILYSKRG------------------ISDIE 158

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            +  D +     +          L+   G+  + +     + +K     + +Y++     
Sbjct: 159 VINEDYLKEKYNLTPKQMIDLKALM---GDKSDNIPGVKGVGEKTALNLLEKYSD----- 210

Query: 244 RKLVMLRTDVPITIPLEHLI-LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                      +    EH+  ++     +LI+       +K +  +    D D    E  
Sbjct: 211 -----------LDGVYEHIEEIKGKLQEKLINDKDNAFLSKDLGTIEVNMDIDLDLNEEC 259

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
             +    E   I  E ++         +    ++ T + N E         + +      
Sbjct: 260 NFNFENEEFISILRELDLKSIIK----KLGVKANDTREDNKENEKDDFSHIKEE------ 309

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                Y  I     + + +  ++   S S   +             I  + +  KD+   
Sbjct: 310 -----YKTISKDISLDEVLNNIKDKKSLSVYFV------LSDDLKTIKSAMIFDKDNFYL 358

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
              ++                +   E++  ++   +      + HN K    V    G  
Sbjct: 359 YDSSV----------------SDISELVKIMRSGLD-----IVTHNFKDVYKVFVSQGYD 397

Query: 483 -MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +    DI L  YVL+     + +  +++K+L    +E  K          I D+     
Sbjct: 398 DIHCRFDIYLGGYVLNPSDERYSLEVMSKKYLDIDLEE-EKGEAVQQSFLDIEDNNKYNM 456

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            ++ +  I  L  + + K+  E++  +Y+ ++  ++ V+  ME+ G ++D + L+++  +
Sbjct: 457 QMKKAKSIYSLAGIFKEKIKEEEMEDLYQNIEHKLMYVLGDMELEGFKVDLNTLEELGVD 516

Query: 602 ISKNLLSLEENIYDLSGEK--FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
             K +  L  NI + +GE   FN++S KQLG +LF K+  P+  KTKTG + T  + LE+
Sbjct: 517 FDKRVEDLTRNIREAAGEDEDFNVNSTKQLGHVLFDKMGLPALKKTKTG-YSTNIEVLEK 575

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +    +PII  I++ RQ+SK+ STY   L + I+K T ++H+ ++   T TGR++S  PN
Sbjct: 576 LR-DHHPIIPMIIDLRQISKLNSTYVKGLVSLIDKDTNKIHSTFNQTITTTGRISSSNPN 634

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP++T+ G+ IR+ FIS      L+ ADYSQIELR+LAHI+K   L   F+N+ DIH
Sbjct: 635 LQNIPVRTEEGRIIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKNNEDIH 694

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A+E+F V I++V+ +MR  AK +NF I+YGIS F LA  L I R +A +YI  Y  +
Sbjct: 695 TRTASEVFNVPIDEVTSEMRSSAKAVNFGIVYGISDFGLAKGLSIARKDAKEYIDTYLSK 754

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +Y+E      ++ GYV T+F RR + +EI S   ++R+  ER A+N PIQGSAAD
Sbjct: 755 YPGVCKYMEDIVVTAKEQGYVTTMFNRRRYINEIYSKNFNVRSFGERTALNTPIQGSAAD 814

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AM++V   L   KL  K++LQ+HDEL+ + P EE+     ++   ME      +++
Sbjct: 815 IIKLAMVNVQNELNKRKLKAKLILQVHDELIIDTPMEEVEEVKALLKDKMENV----VDM 870

Query: 959 RVPLKVNIKVSNNWQEE 975
             PLK +I V   W E 
Sbjct: 871 SCPLKADISVGKTWFEA 887


>gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
 gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
          Length = 874

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 261/968 (26%), Positives = 426/968 (44%), Gaps = 106/968 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L  VDG+S + RA+Y    L+ K +G   N I GF ++L ++L  +  ++     AV F
Sbjct: 8   KLLAVDGNSILNRAYYGIKALTTK-NGEFTNGIYGFLSILLRVLDEAEPDA----VAVAF 62

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++Y  YKA R  +P  L  QL  ++    A G   +  +G+EADDI+ T  
Sbjct: 63  DLRAPTFRHKLYDGYKAQRKGMPHELASQLEPLKELLGALGFQIVTCEGYEADDILGTLA 122

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             + + G+   I + D+D +QLV P   +                K G P   +      
Sbjct: 123 RSSAETGWDCVIATGDRDSLQLVGPHVSVRLATT-----------KMGQPASTLYD---- 167

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
              ++    G+          L+   G+  + +   + I +K              LS  
Sbjct: 168 -ETAVREKYGVEPAQLVDVKALM---GDASDNIPGVAGIGEKTA------------LS-- 209

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
                           LI +  +   + + L  LE    + +                 +
Sbjct: 210 ----------------LIGQYHDIDAIYAQLDTLEIKPGVRKKLG-----------EGKE 242

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
           +  T  K   I  +   D +    + + +    +     +      +ER           
Sbjct: 243 MAYTSRKLGEICCDAPIDASPAAYRRAPVDQAKAAALLARLEMFKMMERWGVDPAA---- 298

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
                            +    G A+ +   +      ++  A  ++    K   +    
Sbjct: 299 ----------------ARETAGGGAAPETAREPSRPMRAEADAPDLAQRVIKAGAADLAF 342

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
            +  +  +     +    TL       L+        L++  + K    + +R G+ +  
Sbjct: 343 GLDGNGDIAAVAAALPDGTLLLSGGETLEPLLAAGVKLRVW-SSKPLHRMAYRRGVHLEN 401

Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D  L +Y+L    + +D   +  ++ + TR              +    +       
Sbjct: 402 VTFDGELAAYLLSPTSAGYDPVQLCAQYATETRA------------LEGEIPEQYAALAA 449

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            +  +  L   L  ++   +   +   ++ P+  V++ ME  G  +D   L+    E+  
Sbjct: 450 QAAALSALLDKLTDEIREHEQEKLLYEIEMPLARVLAGMECEGFALDTQALRDYGGELDD 509

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +      I + +G  FNL+SPKQLGD+LF KL  P+  KTKTG   +T  D+ +     
Sbjct: 510 RIDETHAAIVEYAGYDFNLNSPKQLGDVLFVKLGLPAKKKTKTGY--STNVDVLEALRPQ 567

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +PII  ILE+R+LSK+KSTY D L   +     RV + +    T TGR++S EPNLQNIP
Sbjct: 568 HPIIGEILEYRKLSKLKSTYVDGLLKVVGPDG-RVRSTFQQTETRTGRISSTEPNLQNIP 626

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           I+T+ G ++RR F + P  KL+ ADYSQIELR+LA +A    +   F++  DIH   AA+
Sbjct: 627 IRTEEGSRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAAFQSGEDIHATTAAQ 686

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FG+    V+P MR  AK +NF I+YGI  F L+  + +  SEA  YIK Y   + G+ +
Sbjct: 687 VFGMPGGTVTPLMRSRAKAVNFGIVYGIGAFSLSQDIGVTVSEADSYIKSYLAHYAGVRK 746

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E T  F R+NGYV+T+FGRR +  E+ +     +   ER A N PIQG+AADI + AM
Sbjct: 747 YMEDTIAFARENGYVKTLFGRRRYLPELAASNKVTQAFGERVARNTPIQGTAADIIKIAM 806

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           + V + L    L  +++LQ+HDEL+ E P++EI  A  I+   ME A    I L+VPL+ 
Sbjct: 807 VRVFERLRREGLRARLILQVHDELLVEAPDDEIDRARAILKEEMEHA----IALKVPLEA 862

Query: 965 NIKVSNNW 972
           +  V +NW
Sbjct: 863 DTNVGDNW 870


>gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis]
          Length = 875

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 319/982 (32%), Positives = 478/982 (48%), Gaps = 113/982 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLT-SPKGEPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL++           +  D   +  K+        
Sbjct: 116 IATFATKTAALGEHVVIISSDKDLLQLMTKNI--------KIYDP--LKGKY-------- 157

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               +T D +    G      +    L+   G+  + +     I  K             
Sbjct: 158 ----ITEDDVVTKFGTTSNKLREVMALI---GDRSDNIPGVPSIGPKTAS---------- 200

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                L+     V                    +   +L+    + +  T  +   A + 
Sbjct: 201 ----SLITQFGSVE-------------------NIFNSLDQVSSVKQRETLQNSREAALI 237

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              L I    N  +  +      +   + + +    +    +  +  + L   ++    +
Sbjct: 238 SWQL-IGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLDIKINDHKE 296

Query: 361 YPINNDSY-TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              N  +   +I N  ++  + ++ E IG     +          K   +A     Q   
Sbjct: 297 IADNKVTEIKEINNVNELADFAKEAEKIGIFGIYL-------LQHKGTNLAFILSLQNQS 349

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              K+     DL  + ++  T  N  +  I +       ++   KI +++K         
Sbjct: 350 YIIKIPNTSHDLFSYNTK--TNNNWFSYTIFN----LLTDKSIKKITYSLKPLLKFYANQ 403

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
              +   ED+ LM Y L +G S  ++                          ++    + 
Sbjct: 404 SHDITAIEDLELMQYALSAGLSQKNL------------------------FKEVLKETLI 439

Query: 540 EHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++ I  S  I+  ++ L  +    L   K   +Y  +D P+  ++ +ME  GI +D + L
Sbjct: 440 DNIIIESAKIVINFISLYKQTILELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYL 499

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTA 654
           KQ+SAE    +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G    KT  + T A
Sbjct: 500 KQLSAEFGTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKTSSYSTGA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE+++     I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+
Sbjct: 560 EILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQN+PI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N 
Sbjct: 620 SQEPNLQNVPIRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINK 679

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA++YIK+
Sbjct: 680 DDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKK 739

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  + G+ EY+E+TK F   NGYV   FGR+     I+  K  ++ + ERAAINAPIQG
Sbjct: 740 YFAEYKGVQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQLAERAAINAPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +   
Sbjct: 798 TNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST-- 855

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             N+ VP+   I+  NNW E +
Sbjct: 856 --NMDVPIITEIRAGNNWMEIH 875


>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
 gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
          Length = 875

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 319/982 (32%), Positives = 477/982 (48%), Gaps = 113/982 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+Y    L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYTQQPLT-SPKGEPVGALYGFTSMLLKLLNDFKPQ----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E +G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKKGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL++    +YD +K           K+        
Sbjct: 116 IATFATKTAALGEHVVIISSDKDLLQLMTEHIKIYDPLKG----------KY-------- 157

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               +T D +    G      +    L+   G+  + +     I  K             
Sbjct: 158 ----ITEDDVVKKFGTTSDKLREVMALI---GDRSDNIPGVPSIGPKTAS---------- 200

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                L+     V                    +   +L+    + +  T  +   A + 
Sbjct: 201 ----SLITQFGSVE-------------------NIFNSLDQVSSVKQRETLQNSREAALI 237

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              L I    N  +  +    + +   + + +    +    +  +  + L   ++    +
Sbjct: 238 SWQL-IGLDSNVDLDFQLNNLKWSPPNSDKLTGFLQEYGFRSLYKRVENLLDIKINDHKE 296

Query: 361 YPINNDSY-TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              N  +   +I N  ++  + ++ E IG     +          K   +A     Q   
Sbjct: 297 IADNKVTEIKEINNANELADFAKEAEKIGIFGIYL-------LQHKGANLAFILSLQNQS 349

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              K+     DL  + ++      T        +     ++   KI +++K         
Sbjct: 350 YIIKISNTSHDLFSYNTK------TNNNWFSDIIFNLLTDKSIKKITYSLKPLLKFYANQ 403

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
              +   ED+ LM Y L +G        ++QK L                  ++    + 
Sbjct: 404 SHDITAIEDLELMQYALSAG--------LSQKIL----------------FKEVLKETLI 439

Query: 540 EHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           E+ I  S  I+  ++ L  +    L   K   +Y  +D P+  ++ +ME  GI ++ + L
Sbjct: 440 ENIIIESAKIVINFISLYKQTILELKDNKTFRLYSDIDLPICFILDKMEKVGITVNANYL 499

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTA 654
           KQ+SAE    +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G    K   + T A
Sbjct: 500 KQLSAEFGTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE+++     I   +L WRQL+K+K+TY DSLP  I+  T RVHT +   ST TGRL+
Sbjct: 560 EILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNIP ++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N 
Sbjct: 620 SQEPNLQNIPTRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINK 679

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA++YIK+
Sbjct: 680 DDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKK 739

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  + G+ EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG
Sbjct: 740 YFAEYKGVQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQFAERAAINAPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +   
Sbjct: 798 TNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST-- 855

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             N+ VP+   I+  NNW E +
Sbjct: 856 --NMDVPIITEIRAGNNWMEIH 875


>gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
          Length = 861

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 267/977 (27%), Positives = 452/977 (46%), Gaps = 124/977 (12%)

Query: 5   NHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L L+DG+S ++RA+YAT    + +  +G+P NA+ GF  M+ K L     ++      
Sbjct: 2   KKLLLIDGNSMLFRAYYATVYGRMMKTSNGIPTNAVYGFITMINKALSMVEPDA----VL 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D    TFR+E Y +YK  R ++ + L+ Q P+ R    A+G+   E +G EADDII 
Sbjct: 58  VAWDAGKPTFRHETYTEYKGTRKELDQELIVQFPIAREFLDAYGMKRYECEGIEADDIIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +           + I+S+D+DL+QL+ PTT +Y   K   I    V+ +           
Sbjct: 118 SMAKKYPD--VEIHILSSDRDLLQLIDPTTDVYLMKKG--ITEMEVMDE----------- 162

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
                     +    GI       L    G+  + +     I +K   + + EY      
Sbjct: 163 --------AKLKEAMGIVPSQIIDLKALMGDTADNIPGVKGIGEKTALKLLSEYE----- 209

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                   T   +   ++ +        +L   L+  +    +++   T   DA    P 
Sbjct: 210 --------TVDNVYAHIDEIKG------KLKEKLETDKEKAFLSKYLATIKVDAEIPLP- 254

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                         E  + ++   +   F    +  S +           E  ++ S+  
Sbjct: 255 -------------FEAMLLQEPKEELHDFFVKYEMKSFVKD----TMDTREVKKEGSRSV 297

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +   S   + +   +   V               D    + +     A+S  DQ +    
Sbjct: 298 VKQISSQLLQDGALVYANV---------------DNESYYDAVLYGFAVSLKDQTEYIEL 342

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
           +                          L++LK     E   K  ++ K     LH+ GI 
Sbjct: 343 Q------------------DALADTRFLAWLK-----EENGKAVYDAKNFYHALHKNGIE 379

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQV 538
                 D+M+ ++++D   S +D   +A+K+    S  + ++   +        +   + 
Sbjct: 380 FADVKFDVMIAAFLVDGTLSDYD--KLAEKYQFDRSLLKDDVFGKKGKGK---LVDLDEA 434

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             +A+  ++ +  L   L   L   ++  +++ ++ P+  V+  ME  G+      L ++
Sbjct: 435 ARYAMLQADHLQDLVSELDASLKEMEMKELFDTIEMPLTHVLYAMEKEGVVTSLSTLDEI 494

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           +   S  + +L   IY+++G +FN++SPKQL  IL+ +L   +G K      ++TA D+ 
Sbjct: 495 ARATSDKIDTLSAQIYEMAGMEFNINSPKQLAQILYDELGLKAGKK------RSTAADVL 548

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +     +PII  +LE R+  KI STYA  L  H+ K  + +HT ++   T TGRL+S EP
Sbjct: 549 EKLAKQHPIIPLLLEHRKYQKIYSTYAVGLSKHVLKDGK-IHTIFNQIQTQTGRLSSSEP 607

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQNI ++ + G++IR+AF++     L+SADYSQIELR+LAH+A    +   F + +DIH
Sbjct: 608 NLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMADEEVMIDAFNHGIDIH 667

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              A +IF V+ + V   MRR AKT+NF I+YG S F L+ QL I R EA  +I +YF  
Sbjct: 668 TKTAMQIFDVDHDSVDANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHAFIDKYFAS 727

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +P I  +++ T  F  +NGYV+T+F RR +  EI+     +R   +RAA+NAPIQGSAAD
Sbjct: 728 YPNIKSFMDSTIQFCEENGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAAD 787

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + AMI + + +   ++ ++M+LQIHDEL+F+V E+E+     I+   M++A      L
Sbjct: 788 LIKLAMIHIFERMRREQVKSRMILQIHDELIFDVWEDELEQMKSIVEEGMQQAM----KL 843

Query: 959 RVPLKVNIKVSNNWQEE 975
           RVPL     +  +W E 
Sbjct: 844 RVPLIAEANIGKSWYEA 860


>gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 842

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/925 (29%), Positives = 459/925 (49%), Gaps = 96/925 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+K     ++D S+ +YR  +A  +  R   G+   A  GF N L  +++    + + + 
Sbjct: 1   MKKA---VILDTSAVMYRTHFAL-MGMRNSKGMATGATYGFVNTLEGIIKEFNPDYLVAC 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             +     +   R+E    YKA+R  +P+ L+ Q  ++      + IP  +I G+EADD+
Sbjct: 57  LDI---KRSELKRSEELETYKAHRESMPDDLVAQQDMIMSVLDGYKIPKYKINGYEADDV 113

Query: 121 IATYTYIA---EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-------DIEHVIK 170
           IAT        ++E   V I++ DKDL QLV+    +    K +K        +   VI+
Sbjct: 114 IATLATKFSEDKEEEIEVYIVTGDKDLAQLVNGKINIALLGKGDKKSLFRYIRNDNDVIE 173

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
             G+ P+K+  L  L GDS D IPG+ GIG KT   L+ +YGNLE++  N   IK  KR+
Sbjct: 174 YLGVTPDKIPDLFGLMGDSSDGIPGVSGIGPKTGVELILKYGNLESLYENIDEIKG-KRK 232

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           E ++E  E A LSRKL  +  ++ +    + L +E  +  +L+S  + +EF K    +  
Sbjct: 233 EKLIEDKEKAFLSRKLATVHRNIEMEYDKDKLKMESKDTEKLLSIYRTMEFKKFATTIE- 291

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE--QTPQ 348
                           N  + +G A+  E +   ++     +      +KI++E  QT  
Sbjct: 292 ----------------NEMKKQGKAVNDESNGKISLFGGIVNHPDASDNKISNENRQTED 335

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           K   E+++      + N    ++                             +       
Sbjct: 336 KTTREKIEWSDAENVLNGMKEEV-----------------------------SIFGNEFG 366

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
             I   ++         T +  ++               ++   LK+         IG+N
Sbjct: 367 FVICDGERNIVLLNHENTDYGSIN---------------KVYEKLKE------KSVIGYN 405

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           IK       + G+  R + DIML  YVL    SS D+ +I    L    ++  +  K   
Sbjct: 406 IKEY----LKKGMGYRQYFDIMLAWYVL-GTESSQDLENIIFSELGVNLEKFEEQFKKRK 460

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P ++IS+ +  +   E +  + +L  +L  +L  E L +V+E L+  ++ V++ ME+ GI
Sbjct: 461 P-EEISEEEKTQFLWERAFYVKELKEILENRLKSEDLTNVFENLENKLVPVLASMEMYGI 519

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +I+++  +    E+ +N+  LE  IY L GE FN+ SPKQL +ILF K+      KTKTG
Sbjct: 520 KINKEYFENYKKELQENIEKLEGEIYSLLGEAFNIGSPKQLAEILFDKMGIEPVKKTKTG 579

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
            + T  + LE++      I + +LE+R  +K+ STY + LP   +++  R+HT ++   T
Sbjct: 580 -YSTDVEVLEELALRGIEIAEKLLEYRGFTKLLSTYVEPLPKLADEKD-RIHTTFNQNGT 637

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S  PN+QNIP++TD G KIR+ FIS     L+S DYSQIELR+LA ++K   L 
Sbjct: 638 STGRLSSTNPNIQNIPVRTDEGIKIRKGFISEEGWSLVSFDYSQIELRVLAELSKDENLV 697

Query: 769 QVFENSLDIHRMVAAEIF-GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
             ++   D+H + A +IF   + E+V+ + R  AK INFSI+YG +PF L+ +L+IP ++
Sbjct: 698 LAYKKDKDLHDLTARKIFFKADEEQVTREERSIAKVINFSILYGKTPFGLSKELKIPVAD 757

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A+ YIK YF ++P +  ++E      + NG+VET++G R +   INS   +++    R A
Sbjct: 758 ASLYIKTYFEQYPKVKRFLENILENAKLNGFVETLYGTRRYIKGINSSNKNLQAQANRMA 817

Query: 888 INAPIQGSAADITRRAMISVHKSLE 912
           +N  +QG+AA+I ++ MI ++   +
Sbjct: 818 VNTVVQGTAANIIKKVMIKLYDEFK 842


>gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5]
 gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5]
          Length = 875

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 313/982 (31%), Positives = 471/982 (47%), Gaps = 113/982 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLT-SPKGEPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL++           +  D   +  K+        
Sbjct: 116 IATFATKTAALGAHVVIISSDKDLLQLMTENI--------KIYDP--LKGKY-------- 157

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               +T D +    G      +    L+   G+  + +     I  K             
Sbjct: 158 ----ITEDDVVKKFGTTSDKLREVMALI---GDRSDNIPGVPSIGPKTAS---------- 200

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                L+     V                    +   +L+    + +  T  +   A + 
Sbjct: 201 ----SLITQFGSVE-------------------NIFNSLDQVSSVKQRETLQNSREAALI 237

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              L I    N  +  +      +   + + +    +    +  +  + L   ++    +
Sbjct: 238 SWQL-IGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLDIKINDHKE 296

Query: 361 YPINNDSY-TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              N  +   +I N  ++  + ++   IG     +          K   +A     Q   
Sbjct: 297 IADNKVTEIKEINNANELADFAKEATKIGIFGIYL-------LQHKGANLAFILSLQNQS 349

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              K+     DL  + ++      +        +     ++   KI +++K         
Sbjct: 350 YIIKISNTSHDLFSYNTK------SNNNWFSDIIFNLLTDKSIKKITYSLKPLLKFYANQ 403

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
              +   ED+ LM Y L +G S  ++                          ++      
Sbjct: 404 SHDITAIEDLELMQYALSAGLSQKNL------------------------FKEVLKEPWI 439

Query: 540 EHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           E+ I  S  I+  ++ L  +    L   K   +Y  +D P+  ++ +ME  GI +D + L
Sbjct: 440 ENIIIESAKIVINFIALYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYL 499

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTA 654
           KQ+SAE    +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G    K   + T A
Sbjct: 500 KQLSAEFGTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE+++     I   +L WRQL+K+K+TY DSLP  I+  T +VHT +   ST TGRL+
Sbjct: 560 EILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHKVHTTFLQTSTTTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQN+PI++  G +IR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N 
Sbjct: 620 SQEPNLQNVPIRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINK 679

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A +IF +   +++ + RR AK INF IIYGIS F LA QL +   EA++YIK+
Sbjct: 680 DDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKK 739

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  + G+ +Y+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG
Sbjct: 740 YFAEYKGVQKYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AMI++ + +E  KL T+++LQIHDEL+FE P +E+   + II   ME +   
Sbjct: 798 TNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST-- 855

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             N+ VP+   I+  NNW E +
Sbjct: 856 --NMAVPIITEIRAGNNWMEIH 875


>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 564

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 279/562 (49%), Positives = 386/562 (68%), Gaps = 11/562 (1%)

Query: 426 TIFIDLSVHTS-QDSTGK-----NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             ++ L+      D  G          ++ L  LK   E+E  LK+  N+KYD L+L RY
Sbjct: 3   PPYVPLAHKNGVGDLLGGALAENQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY 62

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536
           GI  R F+D ML+SYVLD+G  +H +  +++K+L +     K++  S K+++  D +   
Sbjct: 63  GIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGKANVTFDLVDID 122

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   +A E+++V L+LWL+L+P+L    L  VYERL++P++ V+++ME  G+ +D+ +L 
Sbjct: 123 RATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGVTVDRQILS 182

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++S E+++    LE+ IY L+GE+FN+ SPKQLGDILF K+    G+KTKTGQW T+A  
Sbjct: 183 RLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASV 242

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +      + + I++WRQL+K+KSTY D+LP +++  T+RVHT YSLAST TGRL+S 
Sbjct: 243 LEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSS 302

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           EPNLQNIP++T  G+KIR AFIS P  KLISADYSQIELR+LAH+A+I  L + FE+ +D
Sbjct: 303 EPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVD 362

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH M A+E+FGV +E +  ++RR AK INF IIYGIS F LA QL I RSEA DYIK+YF
Sbjct: 363 IHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYF 422

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFPGI +Y+E  K   R  GYVETIFGRRI+Y EI S   S+R  NERAAINAPIQGSA
Sbjct: 423 ERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSA 482

Query: 897 ADITRRAMISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           AD+ RRAMI +  +L    L    +MLLQ+HDEL+FEV +E++  A  IIV  ME A +P
Sbjct: 483 ADVIRRAMIKMEPALAQAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMP 542

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            + +RVPL+V+ + + NW E +
Sbjct: 543 ALEMRVPLRVDARAATNWDEAH 564


>gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 896

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 266/981 (27%), Positives = 431/981 (43%), Gaps = 105/981 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           + ++DG S  +RAFYA P  +     G   NA+ GF +ML +LL+  +     +H AV F
Sbjct: 1   MLIIDGHSMAFRAFYALPPENFVTATGQHTNAVYGFVSMLARLLETEK----PTHVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    +FR E YP+YK  R   PE    Q+ L+R    A GI A+  +GFEADDI+AT  
Sbjct: 57  DVSRHSFRTEEYPEYKGTRDATPEEFKGQVELIREVLDAMGIVALSREGFEADDILATLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
           Y A  EG +V ++S D+D  Q V+    +           ++  E +  K+G+PP +   
Sbjct: 117 YQAGHEGASVLVVSGDRDTFQTVTQNVTVLYPGTGPGDLRRMTPEAIEAKYGVPPHRYPE 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           + A+             +G  +            + L     +  K   + I        
Sbjct: 177 IAAI-------------VGETS------------DNLPGVPGVGPKTAAQWI-------- 203

Query: 242 LSRKLVMLRTDVPITIPLEHLI-LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                        +   LE    +    G  L      +   + +NR+ T  D      +
Sbjct: 204 --------NRFDGLDNLLERAHEIGGKRGAALREHTDDVVRNRRLNRLVTDMDLGLTRAD 255

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V    +               D      +F  L  +  +++     Q    E    +++
Sbjct: 256 LVRRATDVAA-----------VDRLFDALEFGRLRAKVREVSGVGMGQGEPEEATDAVAE 304

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                        + D+ +W   L      +  +  D M     +   +  +T  Q    
Sbjct: 305 EQ--QVDVCLADPSSDVSRW---LNERARLALLVEGD-MRPTRGEVTRLVFATDKQA--- 355

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                     L +  ++ +  ++    E L+             + H+ K  +  L   G
Sbjct: 356 ----------LVLDPTELTPAQDRAVAEALA---------STRLVVHDAKGVRHALASRG 396

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS-SIPIDKISDSQV 538
            ++     D ML +Y+    + SH +  +  + L     E         +   +   +  
Sbjct: 397 WTLGEVAFDTMLAAYLAHPDQRSHKLTDVVARILGIEVSEAADEGALFDMDESEEGPTGA 456

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           +  A   +  ++ L   LR  L   K L +   ++ P+  ++  ME TGI +D  +L  +
Sbjct: 457 EMRAGRIAAQLIPLAERLRRTLEESKELGLLSDMEMPLARLLGDMEATGIGVDTGVLSDL 516

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           SAE+  ++       ++ +G + NLSSPKQL ++LF     P   KTKTG         +
Sbjct: 517 SAELGADVEKARRGAWEAAGREVNLSSPKQLQELLFDHFALPKTKKTKTGYTTNAEALAD 576

Query: 659 QINCGD------NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                +      +  +  +L  R   K+K    DSL   +    +R+HT +S  +  TGR
Sbjct: 577 LWAKTEASGGAGHRFLGYLLAHRDRIKLK-QMVDSLIATVGAD-ERIHTTFSQVAAATGR 634

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           LAS +PNLQNIP ++  G +IR AF   P    L+SADYSQIE+R++AH++    L + F
Sbjct: 635 LASSDPNLQNIPARSPDGMRIRGAFTPGPGYASLMSADYSQIEMRLMAHLSGDEALIEAF 694

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +  D+HR +A+ +FG  +E+VS + R   K  ++ + YG+S + LA QL I   EAA  
Sbjct: 695 NSGEDLHRTMASMVFGTPVEQVSGEERSRIKATSYGLAYGLSSYGLAAQLGIAVPEAAAL 754

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
             RYF RF  + +Y+E      R +GY ET+FGRR +  ++ S     R + ERAA+NAP
Sbjct: 755 RDRYFERFGKVRDYLEGLVAQARADGYTETMFGRRRYLPDLRSSNRQRREMAERAALNAP 814

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI + AM++V  +L +  LAT++L+QIHDEL+ E+   E   A +++   ME A
Sbjct: 815 IQGSAADIVKIAMMNVASALANEGLATRLLVQIHDELLLEIAPGEADVAEKLVRERMEGA 874

Query: 952 CLPKINLRVPLKVNIKVSNNW 972
               + L VPL V + V  +W
Sbjct: 875 ----VALSVPLDVAVGVGASW 891


>gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi]
          Length = 850

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 297/971 (30%), Positives = 479/971 (49%), Gaps = 136/971 (14%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             +VD   F++RA+YA P L     G P+  + GF N+L K L        A + AV+FD
Sbjct: 4   FVVVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             +  FR+ +YP YK NRP++PE LL Q   +R A  A GI + E+  FEADD+IAT + 
Sbjct: 59  TGSKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLST 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
               E   V +I+ DKDL+QL+     ++D           +  K+ +  E +V      
Sbjct: 119 KYASEDVQVRVITADKDLLQLMGEHVQIFDP----------IKNKY-LTDEYVVDKF--- 164

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE--YAETARLSR 244
                      G+       +L   G+  + +     I  K     I +    +   LS 
Sbjct: 165 -----------GVTPDKLLDVLALTGDASDNIPGVPSIGVKTAARLINQFGSLDNV-LS- 211

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
                               E     +    L       L++R   +             
Sbjct: 212 ------------------CAEKVEQKKCREMLIQHADQALLSRDLVSLQRAVE----FDG 249

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           D+N    K    E  +      + +      +Q  +I+ E   ++     + +       
Sbjct: 250 DLNKYAKKLPDSEQLLAFLEKYELNSLRGKIEQCYQISLESPDRQGGAGGMPES------ 303

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                   +T+D   +++K E +G  +F          H+K   IA  T+++      + 
Sbjct: 304 --------HTEDPVAFLRKCENVGLLAF----------HAK---IADGTINELSVAYDRE 342

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             +            T +    +  +   ++   ++  LKI H+ K    ++ R+   + 
Sbjct: 343 HAL------------TVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPDLG 386

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
            F+D+MLMSY LD+G   H +A +A ++L                         Q+    
Sbjct: 387 AFDDVMLMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFPAR 422

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            +  ++QL  ++R KL++++L  VY +L++P++ V+ +M+  G+++D ++LKQ+S +   
Sbjct: 423 MACTLVQLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHG 482

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCG 663
           ++ SLE+ IYDL+G  FN++S +QLG +LF ++   S   K  +G + T A+ L ++   
Sbjct: 483 SIRSLEKEIYDLAGCTFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAE 542

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
              I   +L+WR  SK+KSTY D+L   +   T+RVHT YS+ ST TGR++S  PNLQNI
Sbjct: 543 GVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNI 602

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           PI++  G +IR+AF++    KL+SADYSQ+EL+I+AHIA +      F    DIH + A 
Sbjct: 603 PIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQ 662

Query: 784 EIFGVNIEKVS-PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +IFG   + V+ P++RR AK+INF IIYG+SPF LA  + I R EA+ Y+ +YF  +P I
Sbjct: 663 QIFG---DGVTDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPEI 719

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E  K + R+ GY  T FGR+ +   INS + ++R   ERAAINAPIQG+AAD+ ++
Sbjct: 720 KSYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKK 779

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++   LE       ++LQ+HDEL+ EVPE  +   ++++   ME       N  VPL
Sbjct: 780 AMINLRNKLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVPL 831

Query: 963 KVNIKVSNNWQ 973
           KV+I V ++W 
Sbjct: 832 KVDIGVGSSWG 842


>gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 856

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 302/980 (30%), Positives = 467/980 (47%), Gaps = 134/980 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE  + LVDG +  +RAFYA P L    DG+P NAI GF NML K++ +   +       
Sbjct: 2   KEERILLVDGHALAFRAFYALPEL-NAPDGMPTNAILGFLNMLLKIINDENPDQ----VI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR+E Y +YK  RP  PE    QL L++   +  G P IEI+G EADD IA
Sbjct: 57  VFFDAKGETFRHEAYKEYKEGRPPTPEEFKSQLLLIKEIMKYLGYPVIEIEGVEADDAIA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           +   I E +G A  +++ DKD++QL+     +   +K     +  D +   +++G PP  
Sbjct: 117 SVVRILEGKGSA-LVLTADKDMLQLIRADVKVMRPIKGVSTFKVYDEKTFEEEFGFPPSS 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                +L GD +DNIPGIPGIG K A+ L+Q+YG+L                EN+ E+  
Sbjct: 176 FPDYLSLIGDKVDNIPGIPGIGSKRASALIQQYGSL----------------ENLYEHIN 219

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                +K+     D                  +     +  E  +L + +  + D     
Sbjct: 220 ELP--QKIASSLKD------------------KKDELFQWRELIRLRDTLCISPDEFKGG 259

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E     +     +      +I     ++     S   ++     E+TP           
Sbjct: 260 GERNNEALIGIFQR--LGFKQIPERLGLRVKDVDSRETRSKAGEGEKTP----------- 306

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                         NT++ Q W          +           + +  A++   L +++
Sbjct: 307 --------------NTEESQDW------SKIVALAFEGRG---RYPQSFALSRCVLAERE 343

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
            + + +E    D       D+  +    KEIL +                 K     + +
Sbjct: 344 GSFYLLEPKGDD-----DYDALVEKLREKEILIW---------------GFKEFTTSIKK 383

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
                    D  +  Y+L   +SS      +++ L     EI K  KS   +DK      
Sbjct: 384 APFEKDKVWDGKIAYYLLHPDKSS------SKEGL----AEIKKMLKSEEGLDK------ 427

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                  +  +  L+  +  ++  E L  +  R+D P+  V+S+ME  GI++D D L +V
Sbjct: 428 ------EALSLFDLYGKISSEMD-EALHGLMYRIDIPLSVVLSRMERKGIRLDLDHLWKV 480

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E+ + L  ++ +I   +G K NL+SPKQ+G +LF  L  P   KTKTG + T    LE
Sbjct: 481 KQELERTLDDVKASIDMAAGYKVNLNSPKQVGWLLFDHLGLPVIKKTKTG-YSTDVTVLE 539

Query: 659 QINCGDNP---IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           +++  D P   + K +L+ R+L+K+ + +   L + I+ +T +VHT +   ST TGRL+S
Sbjct: 540 ELSRLDRPEALVAKLLLDHRELTKMLTGFVQPLIDAIDPKTGKVHTTFEHTSTGTGRLSS 599

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            +PNLQN+P   D   K++ AF+        I+ADYSQIELR+LAHI+    L + FE  
Sbjct: 600 RDPNLQNLPAYGDWAMKLKEAFVPDRRDGIFIAADYSQIELRVLAHISGDKKLCEAFERG 659

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   AA IFGV+ EKVSP++RR AK INF ++YG++P+ LA++L I R EA   I R
Sbjct: 660 RDIHAETAAWIFGVDTEKVSPELRRMAKMINFGLLYGMTPYGLASRLNIGREEAKTIIDR 719

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP + +YIEK+    R+ GY  ++FGRR   +E+ +   +     +R AIN PIQ 
Sbjct: 720 YFSAFPKVGDYIEKSYEEARKRGYTLSLFGRRRPLNEVTTVVGNSTAALKRVAINTPIQS 779

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADIT+ AMI + ++L+   +   ++LQIHD L+ E   ++    S I+  SME A   
Sbjct: 780 TAADITKIAMIRLDEALQRENIDAALILQIHDSLICECSAKDEEVVSGILKESMESA--- 836

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            + L VPL+VN+K      E
Sbjct: 837 -VELSVPLEVNLKSGRTLAE 855


>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 875

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 324/982 (32%), Positives = 483/982 (49%), Gaps = 113/982 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+YA   L+   D  PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLTSPKD-EPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+ IYP+YKANRP  PE L+ QLPLVR    +   P +E  G+EADDI
Sbjct: 56  VAVVFDSGGENFRHHIYPEYKANRPPPPEDLIVQLPLVRDVASSLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL+S    +YD +K + I  E V+KK+        
Sbjct: 116 IATFATKTVMLGEEVIIISSDKDLLQLMSENIKIYDPLKGKYITEEDVVKKF-------- 167

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
                 G + D +  +          L+   G+  + +     I  K             
Sbjct: 168 ------GTTSDKLREV--------MALI---GDRSDNIPGVPSIGPKTAS---------- 200

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                L+     V                    +   +L+    I +  T  +   A + 
Sbjct: 201 ----SLITQFGSVE-------------------NIFNSLDQISSIKQRETLQNSKEAALI 237

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
              L      N  +  +      +   + + +    +    +  +  + LF  ++    +
Sbjct: 238 SWQL-TGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFKSLYKRAENLFDIKINDHKE 296

Query: 361 YPINNDSY-TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              N  +   +I N  ++  + ++ E IG     ++    D        +A     Q  +
Sbjct: 297 IADNKVTEAKEISNASELANFAKEAEKIGIFGIYLLQHKGDN-------LAFILSLQNQN 349

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
              K+     DL  + ++      T        +     ++   KI +++K         
Sbjct: 350 YIIKISNTSHDLFSYNTK------TNNNWFSDIIFNLLVDKSIKKITYSLKPLLKFYANQ 403

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
              +   ED+ LM Y L +G S  ++                         ++     + 
Sbjct: 404 SHEITAIEDLELMQYALSAGLSQKNL------------------------FEEALKETLI 439

Query: 540 EHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           E+ I  S  I+  ++ L  +    L   K   +Y  +D P+  ++ +ME  GI++D + L
Sbjct: 440 ENIIIESAKIVINFISLYKQTILELKDNKAFRLYSDIDLPICFILDKMEKVGIKVDANYL 499

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTA 654
           KQ+SAE    +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G    K   + T A
Sbjct: 500 KQLSAEFGAEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKVSAKASSYSTGA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE+++     I   +L WRQL+K+K+TY DSLP  I+  T+RVHT +   ST TGRL+
Sbjct: 560 EILEKLSEHGYNIANLLLRWRQLTKLKNTYTDSLPKQIDNITKRVHTTFLQTSTTTGRLS 619

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQN+PI++  G KIR+AFI+    KLISADYSQIELRIL+HIA I  L Q F N 
Sbjct: 620 SQEPNLQNVPIRSSEGNKIRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINK 679

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A +IF +   +++ + RR AK INF IIYGIS F LA QL +   +A++YIK+
Sbjct: 680 DDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGKASEYIKK 739

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  + G+ EY+E+TK F   NGYV   FGR+     I+  K  ++   ERAAINAPIQG
Sbjct: 740 YFAEYKGVQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQFAERAAINAPIQG 797

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + ADI + AMI++ + +E  KL T+++LQIHDEL+FE P EE+     II   ME +   
Sbjct: 798 TNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPVEEVEIIIPIIKKIMENST-- 855

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             N+ VP+   I+  NNW E +
Sbjct: 856 --NIDVPIITEIRAGNNWMEIH 875


>gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG']
          Length = 872

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 278/982 (28%), Positives = 443/982 (45%), Gaps = 147/982 (14%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG  +I+RA++ + +      GLP  AI  F NML  +L    KE   S  AV+F
Sbjct: 25  TLVLMDGFGYIFRAYH-SRVTFVTRAGLPTGAITVFGNMLLSVL----KELSPSAMAVVF 79

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           +      R EI P+ KANRP+ P   L Q+P +    +  G+P +   G+EADD IA   
Sbjct: 80  ESRTGNVRTEILPEIKANRPEPPSDFLQQIPYIERLIRGIGVPLLSTDGYEADDTIAALA 139

Query: 126 YIAEKEGFA------VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
               K+         V I+S+DKDL+ LVS    +YD + ++ +    V +KWG+ P ++
Sbjct: 140 AKWLKQHDRTKVPCHVVILSSDKDLLTLVSERVWVYDPMTKKVLGPSDVREKWGVEPWQI 199

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L ALTGD+ DNIPG+PGIG KTAA LL   G ++ +                 E  + 
Sbjct: 200 PDLLALTGDTADNIPGVPGIGQKTAAKLLGNQGTIDTLY----------------EDLDN 243

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA-N 298
                        VP                R+ + L+        N+  T    D   +
Sbjct: 244 V------------VP---------------ERIRALLREHRERVFRNKKVTVLHADLTLS 276

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           +EP  L ++  +   +    +      + +    +L  +   +  E+  ++   ER    
Sbjct: 277 LEPESLSLSPPDMDSLKSLLQELEAPGLLSRVQRTLELRKPSLAPEEKKRRTTSERRLPF 336

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                              Q  +  +     A                +  +   L   D
Sbjct: 337 -------------------QSDLPHMSGCPGAGID------------LVGDSGFWLHDGD 365

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN----IKYDKL 474
                   IF   S              + +   +  +  +E       +     +    
Sbjct: 366 Q------AIFHPFSDE------------EAVFKKMSAW-RDEGKAVWCFDQTRLYRECPR 406

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
                GI      D  + +Y+LD G   + + ++A ++                 + +IS
Sbjct: 407 FFA-LGIPF--VFDATIAAYLLDPGHRDYLLENLAARYF----------------LTEIS 447

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D            ++  +   L    + E LL + + ++ P+  ++ QME+ G++ID+  
Sbjct: 448 D---------RPRLVRNILSRLWDDAVKEGLLELVQSIEIPLGRILYQMEVLGVRIDRQA 498

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+     I      LEE IY L+G +F + SPKQ+G+IL+ KL  P+  K KTG   +T 
Sbjct: 499 LESARESIEALSRELEEEIYRLAGSRFTILSPKQVGEILYGKLGLPTARKGKTGY--STD 556

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           ++        +P+ + IL +RQ+ K+ STY D +   I+ +  R+H  ++   T TGRL+
Sbjct: 557 EETLTRLSALHPLPEKILAYRQMKKLLSTYVDPIARGIDAQG-RLHGQFNQTVTATGRLS 615

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIP+++  G++IR+ FI+   + L+SADYSQIELR+LAH ++   L  VFE +
Sbjct: 616 SSNPNLQNIPMRSPAGREIRKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERN 675

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A  +FG     V+P+ RR AKTINF I+YG+S F L+  L +   EA  +I R
Sbjct: 676 EDIHARTARLLFGDP---VTPETRRKAKTINFGILYGMSAFSLSQDLGVESQEAQAFIDR 732

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP +    +      ++ G V TI GR+    E+ +     R   ER A+N  +QG
Sbjct: 733 YFGAFPKVGPLFDSILEEAKKTGEVRTILGRKRRIPELFASDRRSREYGERMAVNTVLQG 792

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ +++M+   +  +D      +L+Q+HDEL+FEV E+ +  AS  I   ME A   
Sbjct: 793 SAADLIKKSMVDFGQVRKDRPEIGDLLVQVHDELLFEVREDNLDEASGTIRSLMEGA--- 849

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            + L+VPL V +    NW + +
Sbjct: 850 -LRLKVPLVVQVGQGKNWVDAH 870


>gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 861

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 264/981 (26%), Positives = 443/981 (45%), Gaps = 132/981 (13%)

Query: 5   NHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L L+DG+S ++RA+YAT    + +  +G+P NA+ GF  M+ K L     ++      
Sbjct: 2   KKLLLIDGNSMLFRAYYATVYGRMMKTSNGVPTNAVYGFITMINKALSMVEPDA----VL 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D    TFR+E Y +YK  R ++ + L+ Q P+ R    A+G+   E +G EADDII 
Sbjct: 58  VAWDAGKPTFRHETYTEYKGTRKELDQELIVQFPIAREFLDAYGMKRYECEGIEADDIIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           +           + I+S+D+DL+QL+ PTT +Y   K     E +D   + +  G     
Sbjct: 118 SMAKKYPD--VEIHILSSDRDLLQLIDPTTDVYLMKKGITEMEVMDEAKLKESMG----- 170

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                               I       L    G+  + +     I +K   + + EY  
Sbjct: 171 --------------------IVPSQIIDLKALMGDTADNIPGVKGIGEKTALKLLSEYE- 209

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                       T   +   ++ +        +L   L+  +    +++   T   DA  
Sbjct: 210 ------------TVDNVYAHIDEIKG------KLKEKLETDKEKAFLSKYLATIKVDAEI 251

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P            +  E   +        +  S   +T                   +
Sbjct: 252 PLPFA--------DMMLKEPGEELHDFFVKYEMKSFVKET-------------------M 284

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               +  +    IV                +       D    + ++    AIS  D+ +
Sbjct: 285 DTREVKKEGSRTIVKQISPDLLQDGALVYANV------DNESYYDAQLYGFAISLQDRTE 338

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                                          L +LK     E   K  ++ K     LH+
Sbjct: 339 YI------------------ELSDALQDTAFLEWLK-----EENGKAVYDAKNFYHALHK 375

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKIS 534
             I       D+M+ ++++D   S +D   +A+K+    S  + ++   +     +D   
Sbjct: 376 NNIPFADVTFDVMIAAFLVDGTLSDYD--KLAEKYQFDRSLLKDDVFGKKGKGKLVDS-- 431

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +   +A+  ++ +  L   L   L   ++  ++  ++ P+  V+  ME  G+      
Sbjct: 432 -DEAARYAMAQADYLQDLVAKLDTALREMEMKELFTTIEMPLTHVLYAMEKEGVVTSLST 490

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L +++   S  + +L   IY+++G +FN++SPKQL  IL+ +L   +G K      ++TA
Sbjct: 491 LDEIAKATSDKIDALSAKIYEIAGMEFNINSPKQLAGILYDELGLKAGKK------RSTA 544

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +     +P+I  +LE R+  KI STYA  L  H+ K  + +HT ++   T TGRL+
Sbjct: 545 ADVLEKLASQHPMIPLLLEHRKYQKIYSTYAVGLSKHVLKDGK-IHTIFNQIQTQTGRLS 603

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNI ++ + G++IR+AF++     L+SADYSQIELR+LAH+A    +   F + 
Sbjct: 604 SSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHG 663

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A +IF V  + V   MRR AKT+NF I+YG S F L+ QL I R EA  +I +
Sbjct: 664 IDIHTKTAMQIFDVEHDAVDANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDK 723

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +P I  +++ T  F  ++GYV+T+F RR +  EI+     +R   +RAA+NAPIQG
Sbjct: 724 YFASYPNIKNFMDTTIAFCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQG 783

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + AMI ++K +++ ++ ++M+LQIHDEL+F+V EEE+     I+   M+ A   
Sbjct: 784 SAADLIKLAMIHIYKKMQEEQVKSRMILQIHDELIFDVWEEELEQMKTIVEEGMQHAM-- 841

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
              LRVPL     +   W + 
Sbjct: 842 --KLRVPLIAEANIGRTWYDA 860


>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
 gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
          Length = 861

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 267/976 (27%), Positives = 454/976 (46%), Gaps = 124/976 (12%)

Query: 6   HLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            L L+DG+S ++RA+YAT    +    +G+P NA+ GF  M+ K L     +    +  V
Sbjct: 3   KLLLIDGNSMLFRAYYATLYGRMMTTSNGIPTNAVYGFITMVNKALDMIDPD----YVFV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFR+  Y +YK  R ++ + L+ Q P+VR    A GI   E +G EADDII +
Sbjct: 59  AWDAGKPTFRHTTYKEYKGTRKELDKELIVQFPIVREYLDAAGIKRYECEGIEADDIIGS 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                     A+ I+S+D+DL+QL+ PTT +Y   K             GI   +++   
Sbjct: 119 IAKQ--HPELAIHILSSDRDLLQLIDPTTDVYLMKK-------------GISEIEVMDEA 163

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L             +  +    L    G+  + +     I +K   + + EY     + 
Sbjct: 164 QLMETYT--------LCPQQIIDLKALMGDSADNIPGVKGIGEKTAIKLLKEYQSVDNVY 215

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
             +  ++                    +L   L+  + +  +++   T   DA    PV 
Sbjct: 216 EHIAEIKG-------------------KLKEKLENGKESAFLSKFLATIKTDAKI--PVD 254

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           +           +     +      ++ S+  ++  +         +  E L   S    
Sbjct: 255 MKTCKRVEPSTTLHDFFVKYEMNSFAKASAKKEEVKREGKRNVVPCVSKELLVDGSVLYA 314

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           N                                D  + + +     AI+  +  +  S +
Sbjct: 315 N-------------------------------LDAENYYDATLYGFAIAHGNNCEYISLE 343

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
                  L  +   D+                        KI ++ K      HR  I+ 
Sbjct: 344 DAKNDTALLEYIHTDNG-----------------------KIVYDAKNVYHAWHRNHIAF 380

Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQ 539
                D+ML +++LD   S +D   +A+K+    + +++++   +        + +    
Sbjct: 381 VPVHRDVMLEAFLLDGMISDYD--KLAEKYAFDCTLSKEDVFGKKGKPK---LVVEEDAA 435

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A++ +  +  +   L  +L  + +  +Y+ ++ P+++V+  ME  G+    + L++++
Sbjct: 436 AYAMQCAENLANIEQQLFDELEQKDMKELYDTIEMPVVEVLYAMEKEGVHTSVETLQEIA 495

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
               K + +L   IY+ +G +FN++SPKQL  +L+ +L  P G K  TG       D+ +
Sbjct: 496 EATGKKIEALNAQIYEYAGMEFNINSPKQLAVVLYDELGLPCGKKRSTGA------DVLE 549

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                +PII  +LE R+  KI STYA  L  HI K  + +HT ++   T TGRL+S EPN
Sbjct: 550 KLKPVHPIISLLLEQRKYQKIYSTYAVGLSKHILKDGK-IHTIFNQIQTQTGRLSSSEPN 608

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNI ++ + G+ IR+AF++ P   L+SADYSQIELR+LAH+A    + Q F   +DIH 
Sbjct: 609 LQNISVRDEEGKVIRKAFVASPQHTLMSADYSQIELRMLAHMANEKTMIQAFNQGIDIHN 668

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A +IF V+ + V   MRR AKT+NF I+YG S F L+ QL I   EA  +I +YF  +
Sbjct: 669 QTAMQIFDVDHDHVDSNMRRSAKTVNFGIVYGQSDFGLSEQLGITMKEAKRFIDKYFASY 728

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P I  +++ T  F  +NGYV+T+FGRR +  EIN     +R   +RAA+NAPIQGSAAD+
Sbjct: 729 PNIKTFMDDTIAFCEENGYVKTMFGRRRYIKEINDKNYMMREFGKRAAMNAPIQGSAADL 788

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM+ +++++++ K+ ++M+LQIHDEL+F+V ++E+ T   I+   M++A      LR
Sbjct: 789 IKLAMVHIYQTMKEKKVKSRMILQIHDELIFDVCDDELDTMKDIVEQGMQQAM----QLR 844

Query: 960 VPLKVNIKVSNNWQEE 975
           VPL         W + 
Sbjct: 845 VPLIAEASFGKTWYDA 860


>gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
 gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
          Length = 894

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 256/985 (25%), Positives = 439/985 (44%), Gaps = 101/985 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M  +  L ++DG S  +RAF+A P       +G   NAI GF +ML  L++  +     +
Sbjct: 1   MTGQPRLLVLDGHSMAFRAFFALPADKFSTSNGQHTNAIHGFTSMLINLIKEQQ----PT 56

Query: 60  HFAVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           H AV FD     T R   Y +YK  R + P  +  Q+ L+    +A+GI  I++ G+EAD
Sbjct: 57  HIAVAFDVSDESTHRKAEYSEYKGGRNETPREMSGQIDLIGQVMEAWGIKTIKMPGYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           DI+AT   + EK G  V ++S D+D  QL++    +    K                   
Sbjct: 117 DILATLAAMGEKAGHEVLLVSGDRDAFQLITDNVFVLYPKKG------------------ 158

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  +  +   +I+    +P   Y   A L+ E    +N L     +  K   + I  Y  
Sbjct: 159 VSDIPRMDAAAIEAKYFVPPSRYSDLAALVGE--TADN-LPGVPGVGPKTAAKWINLYG- 214

Query: 239 TARLSRKLVMLRTDVPITIPLEHLI-LEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                           +   LEHL  +    G  L   +  ++  + +N++ T  +    
Sbjct: 215 ---------------GLEGVLEHLDSIGGKVGDSLRENVDNVKRNRRLNQLHTDLEL--- 256

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKT--SQFSSLSDQTSKINSEQTPQKLFLERL 355
              PV LD         A   ++  +   KT  S+  +L        +E+          
Sbjct: 257 ---PVTLDDLYEPRPDQAALEDLFDELEFKTIRSRLFALYGNDDAPAAERE--------- 304

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQK-LETIGSASFKIITDTMDAFHSKPIAIAISTL 414
                  I   +YT      ++  ++        + +               +   I   
Sbjct: 305 ------SIEAPAYTVPTTADELASFLAGGAGQRSALAVD------------LVPGRIGED 346

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                       +++DL+            L  +  + L  +  +    K+ H  K    
Sbjct: 347 AAGLAILRADAAVYLDLTA-----------LDADTENALATWLRDPESPKVLHGFKAALK 395

Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRKEILKSRKSSIPIDK 532
            L   G+ + G  +D  +  Y++   R ++++A +AQ  L+        K+ +  +  D 
Sbjct: 396 ALTARGLELEGVVDDTSISGYLIQPDRRTYELAELAQHHLNVGMPAATAKAGQLELSFDG 455

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            +D+   E  ++ + V+  L      +L   +   +   L+ P+  V++ ME+ GI ID 
Sbjct: 456 -NDTAAAEALVQAAAVVSALSRFFETELKERRAEELLSTLELPVSRVLADMELAGIGIDL 514

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D + +  A++++ +   +E  +   G + NL SPKQL  +LF +L+ P   K K+G    
Sbjct: 515 DRMDEQLADLARVIDQAQEQAFAAIGHEVNLGSPKQLQTVLFEELQLPKTKKIKSGYTTD 574

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A     +    +  +  ++  R+ +K++    +SL   + +   R+HT Y+     TGR
Sbjct: 575 AASLKNLLEKTGHEFLVQLMAHREAAKLR-QMIESLKKSVAEDG-RIHTTYAQNVAATGR 632

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771
           ++S  PNLQNIPI+++ G+++R  F+       L+SADYSQIE+RI+AH++    L Q +
Sbjct: 633 ISSNNPNLQNIPIRSEEGRRVRGIFVVSDGYECLLSADYSQIEMRIMAHLSGDAGLIQAY 692

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           ++  D+HR V + IF V  ++V+  MR   K +++ + YG++ F L+ QL I   EA   
Sbjct: 693 KDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTL 752

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +K YF RF  + +Y+    +  R +GY  TI GRR +  ++ S    +R   ER A+N+P
Sbjct: 753 MKDYFDRFGAVRDYLRGVVDQARVDGYTSTIEGRRRYLPDLTSTDRQLRENAERIALNSP 812

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGSAADI +RAM+ VH  L+   L ++MLLQ+HDELV EV   E      ++   M  A
Sbjct: 813 IQGSAADIIKRAMLGVHAELQAQGLKSRMLLQVHDELVLEVAPGERAAVEALVTEQMAAA 872

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                +L VPL+V I V  +W +  
Sbjct: 873 A----DLSVPLEVQIGVGPSWYDAG 893


>gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
 gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
          Length = 857

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 265/971 (27%), Positives = 449/971 (46%), Gaps = 122/971 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L  +DG+S + RAFY   LL+    G+P NAI GF N+  K L+  + +      AV F
Sbjct: 2   RLLCIDGNSIMNRAFYGIRLLTNSK-GIPTNAITGFMNIYMKELEEVQPD----CVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++    YKANR  +P+ L  Q+PL++      GI  +E +G+EADDI+ T +
Sbjct: 57  DLRAPTFRHKASAAYKANRKGMPDELAQQMPLIKQLLGLLGIKTVECEGYEADDILGTLS 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             A   G    I++ D+D  QLVS    +    T + +      +++++           
Sbjct: 117 KAAADSGNECFILTGDRDSFQLVSDKVTVRLAGTKETKIYTPARIMEEY----------- 165

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
                      G+          L+   G+  + +     I +K    N+++ A +    
Sbjct: 166 -----------GVTPRQMIEVKALM---GDTSDNISGVKGIGEKTAL-NLIQQAGSVE-- 208

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                      +   L+   +   N  +L +           + + + +  +     PV 
Sbjct: 209 ----------ALYADLDSFTITKGNRAKLEA--------GHQDAIDSRFLAEICLEAPVE 250

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            D      K    +++  ++  +       L        + +TPQK   E     +    
Sbjct: 251 RDTAFY--KLGTPDSDKAKELLVDLEMLRLLERLKLTGTNSETPQKSAEET----ALKLK 304

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +   Y   +   D              +   +T+   A        A      K    F 
Sbjct: 305 DLPKYETGLPLNDD-------------AISQMTEGTKA--------AFIFDGAKLQVFFA 343

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +       V  S D   +    +        FFE+    K     K         G  +
Sbjct: 344 DKAY-----VIASGDWDFEGIALR--------FFES-GCEKTAFEGKQAHKFAFDNGTHL 389

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
            G      L  Y+L+S    +   +++  +    R ++ +                    
Sbjct: 390 NGLTFCCDLAGYLLNSQAGEYTTENLSLTYKVAYRSDMGEFA------------------ 431

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
             +   I+ L   L+ +L   ++L ++  ++ P+ +V++ ME  G++ D D +++    +
Sbjct: 432 --DICTIMPLAENLKLRLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTDGIREFGKGL 489

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
            K++ +L   IYDL+G +FN++SPKQLG++LF KL  P+  KTK+G + T A+ LE++  
Sbjct: 490 KKDIEALTSQIYDLAGGEFNIASPKQLGEVLFEKLGLPAKKKTKSG-YSTNAEVLEEL-A 547

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
             +PI+  +LE+R L+K+ STY DSL   +     RV + +    T TGR++S EPN+QN
Sbjct: 548 DKHPIVGLVLEYRTLTKLNSTYVDSLLKEVEADG-RVRSVFKQTETRTGRISSTEPNMQN 606

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++ ++G+ +R+ F++      + ADYSQIELR+LA +     + + F +  DIH M A
Sbjct: 607 IPVRKEIGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIHTMTA 666

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +++FG+  + V P+MR  AK +NF IIYGI  F L+  + +   EA  YIK Y   FP +
Sbjct: 667 SQVFGIPADAVLPEMRSAAKAVNFGIIYGIGAFSLSKDIGVSVKEAKQYIKNYLDNFPKV 726

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            E+++KT     +NGYV TIFGRR +  E+ +    ++   +RAA+NAPIQG+AADI + 
Sbjct: 727 SEFMDKTVEDGIKNGYVTTIFGRRRYIPELAATNKVMQAFGKRAAMNAPIQGAAADIIKM 786

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ V+K L+  KL  +++LQ+HDEL+ EV  ++   A  I+   MEKA    +N  VP+
Sbjct: 787 AMVKVYKRLKAEKLDARLILQVHDELIIEVTPDDKEKAKAILKEEMEKA----VNFTVPM 842

Query: 963 KVNIKVSNNWQ 973
           +V++    +W 
Sbjct: 843 EVSVGEGESWY 853


>gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum]
          Length = 872

 Score =  608 bits (1569), Expect = e-171,   Method: Composition-based stats.
 Identities = 275/982 (28%), Positives = 448/982 (45%), Gaps = 147/982 (14%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG  +I+RA++ + +      GLP +AI  F NML  +L    KE   S  AV+F
Sbjct: 25  TLVLMDGFGYIFRAYH-SRVTFVTRAGLPTDAITVFGNMLLSVL----KELSPSAMAVVF 79

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           +      R+EI P+ KANRP+ P   L Q+P +    +  G+P +   G+EADD IA   
Sbjct: 80  ESRTGNVRSEILPEIKANRPEPPSDFLQQIPYIERLIRGIGVPLLSTDGYEADDTIAALA 139

Query: 126 YIAEKEGFA------VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
                          V ++S+DKDL+ LVS    +YD + ++ +    V +KWG+ P ++
Sbjct: 140 LKWLNHHDRTNVPCHVVVLSSDKDLLTLVSERVWVYDPMTKKVLGPSDVREKWGVEPWQI 199

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L ALTGD+ DNIPG+PGIG KTAA LL   G ++ +  +   +               
Sbjct: 200 PDLLALTGDTADNIPGVPGIGQKTAAKLLGNQGTIDTLYEDLDNVVP------------- 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD-AAN 298
                                          R+ + L+        N+  T    D A +
Sbjct: 247 ------------------------------ERIRALLREHRERVFRNKKVTVLHSDLALS 276

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           +EP  L ++  +   +         + ++  +   L  +  +    + P     E  ++ 
Sbjct: 277 LEPESLSLSPPDMDSL--------KSLLQELEAPGLLSRVHRTLELREPSLAREEGKRRQ 328

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           S                  Q  + ++     A   ++ D+                D   
Sbjct: 329 SSEGRLP-----------FQGDLPQMSGCPGAGIDLVDDS-----------GFWVHDG-- 364

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN----IKYDKL 474
                 +  F   S              +E+L  +  +  +E       +     +    
Sbjct: 365 -----DQANFYPFSSE------------EEVLKRMSAW-RDEGKAVWCFDQTRLYRKCPR 406

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
                GI      D  + +Y+L+ G   + + ++A ++                    ++
Sbjct: 407 FFA-LGIPF--VFDATIAAYLLEPGHRDYLLENLAARYF-------------------LT 444

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D+  +   + N          L    + E LL + + ++ P+  ++ QME+ GI+ID+  
Sbjct: 445 DTSDRPRLVRNVL------SKLWEDAVKEGLLELVQSIEIPLGRILYQMEVLGIRIDRQA 498

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L+     I      LEE IY L+G +F + SPKQ+G+IL+ KL  P+  K KTG   +T 
Sbjct: 499 LESARESIEALARELEEEIYRLAGSRFTILSPKQVGEILYGKLGLPTARKGKTGY--STD 556

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           ++      G +P+ + IL +RQ+ K+ STY D +   ++ +  R+H  ++   T TGRL+
Sbjct: 557 EETLTGLSGLHPLPEKILAYRQMKKLLSTYVDPISRGVDAQG-RLHGQFNQTVTATGRLS 615

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIP+++  G++IR+ FI+   + L+SADYSQIELR+LAH ++   L  VFE +
Sbjct: 616 SSNPNLQNIPMRSPAGREIRKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERN 675

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A  +FG     V+P+ RR AKTINF I+YG+S F L+  L +   EA  +I R
Sbjct: 676 EDIHARTARLLFGDP---VTPETRRKAKTINFGILYGMSAFSLSLDLGVEPPEAQAFIDR 732

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  FP +    +      ++ G V TI GR+    E+++P    R   ER A+N  +QG
Sbjct: 733 YFGAFPKVGPLFDSILEEAKKTGEVRTILGRKRRIPELSAPDRRSREYGERMAVNTVLQG 792

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ +++M+   +  +D      +L+Q+HDEL+FEV E+ +  AS  I   ME A   
Sbjct: 793 SAADLIKKSMVDFGQVRKDRPEVGDLLVQVHDELLFEVREDNLEDASGTIRSLMEGA--- 849

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            + L+VPL V +    NW + +
Sbjct: 850 -LRLKVPLIVQVGHGKNWVDAH 870


>gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 750

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 235/787 (29%), Positives = 393/787 (49%), Gaps = 51/787 (6%)

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           KTA  LL EYG+L++I  + ++IK       + +  E A  S+ +  +  DVP+ I  E 
Sbjct: 1   KTAVKLLAEYGSLDSIYESVNQIKGA-IANKLKQGQELAYHSQTMARIICDVPLDINWED 59

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
             L+  +   LI  LK LEF   IN++                            + EI+
Sbjct: 60  CQLQGFDSQELIPLLKQLEFHGFINKINQLQSQFKG-----------------LFDVEIN 102

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
              +  +        + +  N ++       E     ++    +     I   + +   V
Sbjct: 103 SSISASSPPTELEISENNDNNEDEDVWFFSAEDTTLETKAIAPSIHPQIIQTPEALAILV 162

Query: 382 QKLETI----GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
            +L+T        ++   T +++   +  + I      +  D +      +I L+     
Sbjct: 163 NRLKTHINPEKPVAWDTETTSLEPRDANLVGIGCCWGSELSDLA------YIPLNH---- 212

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVL 496
            + G+    +++L  L+   E+E + K   N K+D+L+L   GI+++G   D ML SY++
Sbjct: 213 -TQGEMLNIEQVLEALRPILESEEYPKTLQNAKFDRLILRSQGITLKGVVFDTMLASYII 271

Query: 497 DSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
           +   SSH++  ++ ++L       +   +       I  +  + V  +   +     Q+ 
Sbjct: 272 NP-ESSHNLTDLSLRYLPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQIT 330

Query: 554 LLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
             ++  L    +L  +  ++++P+  +++ ME  GI+ID D L Q+S ++ + L +LE+ 
Sbjct: 331 QKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLEKT 390

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
            +  +GE FNL SPKQL ++LF +L+       KT    +T   + +    D+P+I +IL
Sbjct: 391 SHQAAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVINSIL 450

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
           E+R LSK+KSTY D+LP  +   T R+HT ++ A T TGRL+S  PNLQNIPI+T+  ++
Sbjct: 451 EYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQ 510

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR+AFI      L+SADYSQIELRILAH+++   L + +  + D+H + A  +F  + + 
Sbjct: 511 IRKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTNQDVHSLTAKLLF--DRDG 568

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           ++P+ RR  K INF +IYG+   R A ++ +  +    +I R+  ++PG+ EY+E  K  
Sbjct: 569 ITPEERRLGKIINFGVIYGMGAQRFAREVGVSATAGKQFIDRFNSQYPGVFEYLESQKLA 628

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINE----RAAINAPIQGSAADITRRAMISVH 908
               GYVETI GRR +++ +        N  +    RAA NAPIQGS+ADI + AMI + 
Sbjct: 629 AINQGYVETILGRRRYFESLKGRDRDRLNYQDEQMLRAAANAPIQGSSADIIKIAMIKLA 688

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           + L+      ++LLQ+HDELVFEVP  E       I  +ME        L VPL V+I  
Sbjct: 689 EILK--NYQARLLLQVHDELVFEVPLSEWEELEYQIKSTMENCLF----LSVPLVVDIHA 742

Query: 969 SNNWQEE 975
             NW E 
Sbjct: 743 GTNWMEA 749


>gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
 gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
          Length = 888

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 272/976 (27%), Positives = 418/976 (42%), Gaps = 99/976 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  LFLVDGS++IYR ++A   L+R  DG P +A+     M+++LL    KE    H  
Sbjct: 10  SQTPLFLVDGSAYIYRGYHAFRDLAR-SDGFPTSALF----MIFRLLFKILKEQEPRHLV 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D    TFR+ IY  YKANR  +PE L  QL  +R      G+P I  QG EADD IA
Sbjct: 65  FFLDGKGPTFRSNIYAAYKANREAMPEPLARQLEPLRQGLSLLGVPVIIPQGAEADDGIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDIEHVIKKWGIPPEKMV 180
           +           V I+  DKDL Q +S    LYD     E+   +       GI P    
Sbjct: 125 SLAARFSS-NLPVVIVGADKDLKQCLSDRVVLYDPSGKAEKITTLSDFTADCGIAPASWP 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            LQAL GD+ DNIPGIPG+G KTA  +L++   LE +      IK  K R+ I+   E  
Sbjct: 184 DLQALVGDTSDNIPGIPGVGPKTALDILRQLPTLEAVRDGLDTIKP-KVRDKIVPLMEEL 242

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            + R+L  L+TD+        L     +  RL +        K +      Y+      +
Sbjct: 243 FIYRELTRLKTDI--------LPETSLDDARLGA-----PDAKALREFLLAYELRNLARD 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                     +   A           + S F +     ++     +     +        
Sbjct: 290 IPGQPPAAAGSATSAAPAASAGPRAAQLSLFDAPRPDVAQSAGTLSAPPAAVPAPVVF-- 347

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                                                 +D     P    ++ +  +   
Sbjct: 348 ------------------------------------TPLDEL-PDPAGRQLALVPLETGY 370

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           S         +       +       +  +  +K                     L    
Sbjct: 371 SLSYGPDEYGIDPTPDALAAFLARADRAAVPSVKALLSAS---------------LAFAA 415

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           + +  + D+ L +Y+L+    ++    +     +    +      +         + V  
Sbjct: 416 VPLAVWFDLGLAAYLLNPESRAYAFDRLRDSLFADPSVDTEGVSPTDNARAAALLADVLA 475

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
             +E +                  L  +   L+ P++ V+  ME  GI ID+      + 
Sbjct: 476 ARLETA-----------------GLSRLVAELEMPLVPVLVAMERAGIGIDKTAFAAFAD 518

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E++  L  LE +I  L+G+ FN  S +QLG+IL+T L   +  KT  G    T+QD  + 
Sbjct: 519 EVAGRLAILETDIVALAGKPFNPRSSQQLGEILYTDLGLKAHGKTPGGAAS-TSQDALER 577

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
             G +P++  ILE+R+L K++STY   +P   + R  R+HT  +  +T TGRL+S  PNL
Sbjct: 578 LAGAHPLVDRILEFRKLEKLRSTYLAPMPALAD-RDSRIHTTLNNMATATGRLSSSNPNL 636

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+ + G+++R  F + P  +L++ADYSQIELR+LAH++  + L   F +  DIH  
Sbjct: 637 QNIPIRGEFGRRMRACFTAGPGNRLVAADYSQIELRVLAHLSGESALLDAFAHGADIHAR 696

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            AA +F    E ++P  RR AKTINF ++YG+ P +L+  L I    A  +I RYF R P
Sbjct: 697 TAAILFDKPEEAIAPDERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIARYFERLP 756

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  + E      +++G+V T+ GRR    +I S  S + +   R AIN  +QG AADI 
Sbjct: 757 GLSAFYEGIVEAAKRDGFVTTLAGRRRLLPDIGSANSQLSSQARRQAINTVVQGGAADII 816

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM++         L   ++LQIHDEL+ E PE     A   +   M       I+L V
Sbjct: 817 KMAMLAAAGDAALAGLGAVLVLQIHDELLLETPEAAAKEAGARLAGLM----TGVISLAV 872

Query: 961 PLKVNIKVSNNWQEEN 976
           PL+V+      W E +
Sbjct: 873 PLEVDWGTGRTWGEAH 888


>gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 870

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 257/964 (26%), Positives = 445/964 (46%), Gaps = 99/964 (10%)

Query: 15  FIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFR 73
             +RAFYA P  +     G   NA+ GF +ML  +++  +     +H AV FD    TFR
Sbjct: 1   MAFRAFYALPAENFATSTGQHTNAVHGFVSMLLTMIRQQK----PTHVAVAFDLDTPTFR 56

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           +  Y +YK  R K PE    Q+ L++   +A  IP+I ++ FEADDI+AT     E+ GF
Sbjct: 57  SLEYTEYKGGRNKTPEEFYGQIDLIQEVMKAMNIPSITLESFEADDILATLATQGEEAGF 116

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            V ++S D+D  QL++  T +    K                   +  +  +  D+++  
Sbjct: 117 NVLVVSGDRDAFQLITDKTLVLYPKKG------------------ISDIPPMDADAVEAK 158

Query: 194 PGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
             +    Y   A L+ E    +N L     +  K   + I  Y +       L  +  + 
Sbjct: 159 YFVRPERYSDLAALVGE--TADN-LPGVPGVGPKTAAKWINLYGD-------LAGILENA 208

Query: 254 PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKG 313
                     ++   G  L   +  +   + +N++    +      +  +   N  E + 
Sbjct: 209 E--------NIKGKVGDALREHVDNVTRNRRLNQLKHDLELPVTLEQMELQAPNREEIEN 260

Query: 314 IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373
           +    E     T++   F                         +  +       +T++V 
Sbjct: 261 LFDALEF---NTLRKRLFDLF--------------------AAQEEEAAPEVAEFTRVVT 297

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
                              K + D ++A    PIAI  + +D         + + + L  
Sbjct: 298 EDA----------------KALRDFLEAGKGAPIAIQPAVVDG--------QAVGLALFR 333

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLM 492
                    + L +   + L +F  +    KI H+ K    +L   G+ + G  +D ++ 
Sbjct: 334 GAQAAWLDLSGLDEAAENVLAQFLADAAAPKIFHDAKATMHLLADRGLKLAGIHDDTLIS 393

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           +Y++   R SHD+  + Q  L Y    + +++K  + +   +D  + E A+  +  I  L
Sbjct: 394 AYLIQPDRRSHDLVDVVQYHLKYAVP-VHQAKKGELDLGLTAD--LAEPALAQAQAIHDL 450

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
              L  KL  +    +   ++ P+I V+ +ME  G+ +D D L ++ A  ++ +     +
Sbjct: 451 SAFLATKLAEKHADKLAAEMELPLIPVLFEMERAGVAVDVDRLNELRAHFTEQVDQATND 510

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
            +   G + NLSSPKQL  +LF +L  P   K KTG         + +    +P +  ++
Sbjct: 511 AFAAIGHEVNLSSPKQLQVVLFEELDLPRTKKIKTGFTTDAESLADLLVKTGHPFLVALM 570

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
            +R   K++ T  D L    ++   R+HT Y+     TGRL+SL PNLQNIP++++ G++
Sbjct: 571 AYRDAIKLRQT-VDGLLKATHEDG-RIHTTYAQTVAATGRLSSLNPNLQNIPVRSEEGRR 628

Query: 733 IRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           IR  F+     + L++ DYSQIE+RI+AH+++   L + ++N  D+HR V + +F V  E
Sbjct: 629 IRDVFMVGEGYQSLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHRYVGSRVFNVEPE 688

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+ +MR   K +++ + YG+S F L+ QL+I   EA   +K YF RF  +  Y+    +
Sbjct: 689 EVTSEMRSKVKAMSYGLAYGLSSFGLSKQLKIGVDEARKLMKDYFDRFGAVRTYLRSVVD 748

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
             R++GY ETIFGRR +  E+NS    +R+I ERAA+NAPIQGSAAD+ + AM+ + + L
Sbjct: 749 QARKDGYTETIFGRRRYLPELNSSDRRLRDIAERAALNAPIQGSAADLVKVAMLRIDEEL 808

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           +  +  ++MLLQ+HDEL+ E+ E E+    +++   M +A      L VPL V   V   
Sbjct: 809 KAGEYKSRMLLQVHDELILEIAEGELEPVQELVTREMGQAA----ELLVPLDVQPGVGRT 864

Query: 972 WQEE 975
           W + 
Sbjct: 865 WHDA 868


>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
          Length = 886

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 269/965 (27%), Positives = 437/965 (45%), Gaps = 117/965 (12%)

Query: 17  YRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           +RAFYA    + R   G+  NA+ GF +ML  ++  +R     +H AV  D    TFR+ 
Sbjct: 25  FRAFYALREPMMRTESGVATNALFGFASMLANVVAQTR----PTHLAVALDAEGPTFRDA 80

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
           I   YK  R   P+ L  QL   R   +A G+PA+E  GFEADD+IAT    A   G A 
Sbjct: 81  ILESYKGTRAPTPDDLRQQLDAARGLLEAIGVPAVEASGFEADDVIATLATRARDAGIAT 140

Query: 136 TIISTDKDLMQLV-SPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190
            I++ D+DL+QLV  P   +  T K     E  D   V++ +G+PP +   L +L GDS 
Sbjct: 141 RIVTGDRDLLQLVEDPLIVVLLTRKGVSNLEAFDEAKVLETYGVPPARYGDLASLRGDSS 200

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLR 250
           DN+PG+PGIG KTAA LL  + ++E                 IL + + A  +R+     
Sbjct: 201 DNLPGVPGIGPKTAAALLDRFESIEG----------------ILAHLD-ALSARQ----- 238

Query: 251 TDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTE 310
                          +         L+A   T+L   VA     DA  + P       T 
Sbjct: 239 --------------REALEQARSQLLEARLLTQLRRDVAELPSLDALRLGPWDPRRAETL 284

Query: 311 NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK 370
             G        +          +  D+   + S                           
Sbjct: 285 MVGTFELRRPFQALVRAFEGRPTAGDEPPPVESPVAH----------------------- 321

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF--KVETIF 428
            +        V++L   G+      T   D   S+ + +A+         S       ++
Sbjct: 322 -LTDVSAAAVVERL-APGATVAVAATFAGDPGRSRVVELALGVEGVVWAGSPEDAPTHLW 379

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
             L       +  K  +   ++ +                               R   D
Sbjct: 380 EALGSCVLVGAGPKEIVRSLVMEHAVPL-------------------------EPRALVD 414

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
           + ++ +++DS   +H +  +A++WL     +       + P+           A +   V
Sbjct: 415 LEVLGWLVDSADVAHGLDQLARRWLGRHLDDRGPLEAEAAPLG----------ARQWVEV 464

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           +  +   L  +L  + L  +   ++ P+  V++ MEI G+ ID+D+L  +  E++     
Sbjct: 465 VHPIREALERRLTEDDLWRLATDVEIPLTRVLTDMEIHGVAIDRDVLAAIGTELATERDR 524

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
               +   +G + N +SP+QL  +LF +L  P+G KTKTG + T A+ LE +    +PI+
Sbjct: 525 ALAEVRHYAGGELNPNSPRQLAVVLFERLGLPAGRKTKTG-YSTDARVLESLR-DAHPIV 582

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
             IL +R+L K+ ST+ + L + I     R+H  ++ A   TGR++S  PNLQNIP++TD
Sbjct: 583 AAILRFRELDKLLSTFYEGLRSEIGADG-RIHATFNQAVARTGRISSERPNLQNIPVRTD 641

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
            G++ R AF++     L++ADYSQIELR+LAH++    L ++     D+H +VAA +FGV
Sbjct: 642 EGKRFRDAFVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGDVHTLVAARVFGV 701

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
             E+V+PQ R  AK + + + YG+  + LA +L +P +EA   +  +F  FPG+  Y + 
Sbjct: 702 PAERVTPQQRSVAKMVTYGLSYGMEAYGLAQRLGVPPAEAEGILADFFAAFPGLRHYRDA 761

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
           + +  R  G+  T+ GRR +  +++SP  ++R   ER A+NA  QG AADI + A++ +H
Sbjct: 762 SVDAARAQGFTTTLLGRRRYLPDLDSPNRTVRQGAERQAMNAGTQGLAADIFKIALVRLH 821

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            +L        ++LQ+HDE+V E   E       ++   +E A      LRVPL+V   V
Sbjct: 822 AAL--SPTDGALVLQVHDEVVVEAVAERAHDVRALVEDVLEHA----FALRVPLRVQSGV 875

Query: 969 SNNWQ 973
             +W 
Sbjct: 876 GRSWG 880


>gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium]
          Length = 647

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 207/698 (29%), Positives = 356/698 (51%), Gaps = 57/698 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               LVDGS F++RAF+A P L+    GL  NAI G  + + KL++  +     +H AVI
Sbjct: 2   PPFVLVDGSYFLFRAFHALPPLTT-STGLQTNAIRGAISAIQKLMRRVQ----PTHMAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+ + P YK +RP +PE L  Q+P +    +A GIP   + G EADDII T 
Sbjct: 57  FDTPEPTFRHVLSPIYKGDRPSMPEELSQQIPYLHALIRALGIPLHTLPGAEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AEK G  V I + DKD+ QLV+    L D+ K++ +D++ VI+K+G+ P++++    
Sbjct: 117 AKRAEKAGHQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDVDGVIEKFGVRPDQIIDYLT 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD+ D I G+PG+G KTAA LL EYG +  IL N   IK  K  +++ +  E   L  
Sbjct: 177 LMGDASDGIRGVPGVGAKTAAKLLNEYGTIAGILENVDNIKG-KVGQSLKDNVEGIALDH 235

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D+ +++  + L L + +   L +    LEF   +  +    + ++   +    
Sbjct: 236 QLASIVIDLDLSLSYDDLKLCEPDVEALRNLYTELEFRNQLQSLDHPNNPNSPTYKQTTQ 295

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
            I+ TE     +E+EI    T  +                                  + 
Sbjct: 296 SISKTEQ---PVESEITDQATSSSVD------------------------------DRLG 322

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  +++ +   +  Q+L T    +    T ++D   ++ +  +++  D  D     +
Sbjct: 323 EATYHTVLSQEAWDKLFQRLSTEKRFAIDTETTSLDYRIAEMVGFSVAF-DANDAYYIPL 381

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
              +       ++D+         I+  +K   E+    KIGH++KYD  +   +GI ++
Sbjct: 382 AHDYEGAPEQLNRDA---------IIQQIKPILEDPSVEKIGHHLKYDAHIFENHGIHLQ 432

Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540
           G + D ML SYVL++  + H +  +A+ +LS+   T +++          ++I       
Sbjct: 433 GWYFDTMLASYVLNAVTTRHGMDDVARVYLSHLTTTFEQVAGKGAKQKTFNQIEIETAGH 492

Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V  +L+ +L  KL    +L+++   ++ P+  V++ ME  GI++D   L Q+S
Sbjct: 493 YAAEDAHVTYRLYEVLERKLKEIPELINILHHIEMPVASVLATMEENGIELDLSFLDQLS 552

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            + +  + +LE  I +++GE FN+ SPKQ+G++LF KL    G KT TGQ+ T+   LE+
Sbjct: 553 VDFANTIQNLENQIIEIAGESFNVGSPKQVGEVLFEKLGLKGGKKTATGQYSTSEAVLEK 612

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           I   D+PI + I+E+R L+K++STY ++L    N  T 
Sbjct: 613 I---DHPITELIIEYRGLTKLRSTYTEALVKQANPDTH 647


>gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80]
 gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80]
          Length = 525

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 231/530 (43%), Positives = 339/530 (63%), Gaps = 11/530 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511
           LK   E+E   K+G N+KYD  V+ RYG+ +RG   D ML SYV +S    HD+ S+A +
Sbjct: 1   LKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 60

Query: 512 WLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLH 567
           +L ++    +++    K+ +  ++I+  +  ++A E+++V L+L   + P +  + KL  
Sbjct: 61  FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 120

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           VY  ++ P++ V+S++E TG+ ID  LL   S EI+  L  LE+N Y+L+G+ FNLSSPK
Sbjct: 121 VYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPK 180

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  ILF ++K P   KT +G   T  + L+++   D P+ K ++E+R L+K+KSTY D 
Sbjct: 181 QLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDK 239

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  IN  T RVHT Y  A T TGRL+S +PNLQNIP++ + G++IR+AF++P   K+++
Sbjct: 240 LPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMA 299

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            DYSQIELRI+AH++    L   F +  DIH   AAEI GV I++VS + RR AK +NF 
Sbjct: 300 VDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFG 359

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++   Q GYVETIFGRR+
Sbjct: 360 LIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRL 419

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHD 926
           H  EI S  +  R   ERAAINAP+QG+AADI ++AM+ V + +E       K+L+Q+HD
Sbjct: 420 HLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHD 479

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ELVFEV E  ++     +   ME A      L VPL       +NW++ +
Sbjct: 480 ELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQAH 525


>gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 842

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 301/972 (30%), Positives = 486/972 (50%), Gaps = 134/972 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE    ++DG  F++RA+Y    L+    G+PV A+ GF NM+ K + +S       +  
Sbjct: 2   KEKTFTIIDGYGFLFRAYYVLHHLTTTA-GIPVGAVYGFLNMVLKYISHS------DYLT 54

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +  D     FR+ +Y +YKANR   PE L+PQ  ++R A +AF     EI+G+EADDIIA
Sbjct: 55  IALDSGKKNFRHSLYSEYKANRVTPPEDLIPQFTILREAVEAFNFSYEEIEGYEADDIIA 114

Query: 123 TYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T     A  E F V ++S+DKDL QL++    ++D +K   +D + VI+K+         
Sbjct: 115 TLAAKYANHEDFKVVVVSSDKDLFQLLNYNILIFDPIKNIYVDEKQVIEKF--------- 165

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
                           G+       L    G+  + +     I  K   + +        
Sbjct: 166 ----------------GVNSNKLLDLFSLTGDASDNIPGVPGIGPKTAAKLL-------- 201

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                     D   ++      + +    R+ + L   +   LI+R   +          
Sbjct: 202 ----------DKFDSLDNIIENINNIEQTRVRNILTEHKEKALISRELLSLCKKV----D 247

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           +  DI   E     +E  +     +K  +F+SL  +  K+ S                 Y
Sbjct: 248 LQHDIVKYEVHPPNMEKLLSF---LKKYEFNSLIGKVEKLFS-----------------Y 287

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             ++       ++++++++++     G  +     +     +++   I++S     +D  
Sbjct: 288 SGSSTKEKTEYSSEELEKFLEHCRYEGKIAIHCHFE-----NNRLNKISLSC---SEDNI 339

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F +                   +  ++ L+ +     +   LKI H+I+  + +      
Sbjct: 340 FYI-----------------DQSCLQDALTIINSTLFSNGVLKIVHDIRKIREIFPTIER 382

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +   +D+M+MSY LD+G+  H I +I    LS   +                       
Sbjct: 383 VLDSIDDLMIMSYSLDTGKHDHSIPNIIAHNLSKNVETF--------------------- 421

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
              ++ +++ +   L  +L  EKL  +YER D+P++ V+  ME  GI ++   L+++S +
Sbjct: 422 ---SAKILIAIHEKLTQRLFQEKLFTIYERFDRPLMKVIFDMEQNGILLNIQKLQELSDK 478

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
             + +  LE +I++L+GEKFN++SPKQL D+LF K++     K+K+G + T  + LE + 
Sbjct: 479 FEQLIAVLENDIHNLAGEKFNIASPKQLSDVLFNKMELSKKKKSKSGSYSTNYEVLEALE 538

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
                I   IL WR LSK+K TY D+L   ++    R+HT +S   T TGRL+S  PNLQ
Sbjct: 539 EEGVEIASKILNWRHLSKLKGTYTDALIKQVDPIDGRIHTSFSTTVTATGRLSSSNPNLQ 598

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIPI+++ G  IR+AFI+P   K+ISADYSQIEL++LAH+A +T   + F N  DIH + 
Sbjct: 599 NIPIRSEEGNFIRQAFIAPKGCKIISADYSQIELKLLAHVANVTAFKEAFANRQDIHDIT 658

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A ++FGV  +++  Q+RR AKTINF IIYGISPF LA +L I   EAA+YI  YF  +P 
Sbjct: 659 ARQVFGV--QEIDEQLRRKAKTINFGIIYGISPFGLAKRLGITFQEAAEYINYYFSCYPE 716

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  Y+EK  +  R +GYVET+FGRR    +IN+    +R   ERAAINAP+QG+AADI +
Sbjct: 717 IKVYMEKAVSIARNHGYVETLFGRRCFVRDINNKIPYLRQFAERAAINAPLQGTAADIIK 776

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           RAMI +   L+      K++LQ+HDEL+ EV E  +   ++++   ME A    + + +P
Sbjct: 777 RAMIRLFDQLKS----GKIILQVHDELLVEVEESRVQETAKLMKDIMENA----VEISIP 828

Query: 962 LKVNIKVSNNWQ 973
           L+V IK+S+NW 
Sbjct: 829 LEVEIKISDNWG 840


>gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
 gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
          Length = 736

 Score =  598 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 225/723 (31%), Positives = 347/723 (47%), Gaps = 78/723 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDGSS++YRA++A P L R   G P  A+ G  NML ++    RKE  A + A
Sbjct: 11  EGKTLLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    TFR+E+Y DYKANRP +P  L  Q+  +  A +A G P + + G EADD+I 
Sbjct: 66  CVFDAKGKTFRDELYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+ G  V + + DKDL QLV+    L +T+  E +D + VI K+G+PPE+++  
Sbjct: 126 TLAREAERRGMNVIVSTGDKDLAQLVTEHVTLVNTMTNETLDRDGVIAKFGVPPERIIDY 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD++DN+PG+   G KTA   L +YG L+ ++ +A+ IK     +N+    +   L
Sbjct: 186 LALIGDTVDNVPGVEKCGPKTAVKWLSQYGTLDGVIEHAAEIKG-VVGDNLRRALDFLPL 244

Query: 243 SRKLVMLRTDVPITIPLEH----LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            RKLV + T   +   LE     L  +      L        F   +  + +    + ++
Sbjct: 245 GRKLVTVDTACDLAPHLESIDASLKTDGEARDLLRDIFARYGFKTWLREIDSA-PAEGSD 303

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +    +       G+A E                                         
Sbjct: 304 TDAPDGEPAPVIASGVARE----------------------------------------- 322

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                    Y  I        W+ KL+     +F   T  +D   ++ + ++ S    K 
Sbjct: 323 ---------YDTIQTWAQFDAWLAKLDAAELTAFDTETTALDPMVARLVGLSFSVEPGK- 372

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V     D+          +     E+L+ LK + E+    K+G ++KYD  VL  
Sbjct: 373 AAYLPVAHRGPDMP---------EQLPLDEVLARLKPWLESADRRKVGQHLKYDAQVLAN 423

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           YGI + G   D +L SYVL+S R+ HD+ S+A + L       +++       I  D+++
Sbjct: 424 YGIELNGIEHDTLLESYVLESHRT-HDMDSLALRHLGIKTIKYEDVAGKGAKQIGFDEVA 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +Q  E+A E++++ LQL   L P++  E  L  VY  ++ P+  V+ +ME TG+ ID  
Sbjct: 483 LAQAAEYAAEDADITLQLHRALYPQIAREPGLERVYREIEMPVSHVLRKMERTGVLIDDA 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           LL   S EI+  L+ LE   Y+L+G +FNL SPKQ+G I F KL+ P   KT +G   T 
Sbjct: 543 LLHAQSTEIATRLIELEAQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTD 602

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            + L+++   D P+ K +LE R LSK+KSTY D +P  +   T RVHT Y+ A   +   
Sbjct: 603 EEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKMPRMVIPATGRVHTNYAQAVRRSRAA 661

Query: 714 ASL 716
           +  
Sbjct: 662 SHR 664


>gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 880

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 251/968 (25%), Positives = 421/968 (43%), Gaps = 95/968 (9%)

Query: 15  FIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD-YPAVTF 72
             +RAFYA P  +     G   NA+ GF +ML  L+++ +     +H AV FD     TF
Sbjct: 1   MAFRAFYALPAENFSTARGQYTNAVHGFTSMLINLIKDQK----PTHVAVAFDVSDDTTF 56

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132
           R   Y +YK  R   P     Q+ L+    +A+GI  I + G+EADD++AT     +  G
Sbjct: 57  RKAEYSEYKGGRNATPAEFAGQIGLIAKVMEAWGIRTIAMPGYEADDVLATLAAQGDAAG 116

Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDN 192
           F V ++S D+D  QL++    +                K G+     +   A+     + 
Sbjct: 117 FEVLLVSGDRDAFQLINDNVFVLYP-------------KQGVSNIPKMDAAAI-----EE 158

Query: 193 IPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTD 252
              +    Y   A L+ E    +N L     +  K   + I  Y                
Sbjct: 159 KYFVKPGLYSDLAALVGE--TADN-LPGVPGVGPKTAAKWINLYG--------------- 200

Query: 253 VPITIPLEHLI-LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTEN 311
             +   LE+L  +    G  L   L+ ++  + +N++ T  D     I    L     + 
Sbjct: 201 -GLEGILENLDSIGGKVGGALKENLENVKRNRRLNQLLTDLDL---PITLADLHEPRPDR 256

Query: 312 KGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKI 371
           + I    E     T++T  F    D T+    E                           
Sbjct: 257 QAIEELFEELEFRTLRTRLFDLYGDDTAGAAPETI------------------------- 291

Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDL 431
                              +       ++AF +    +  +   Q        +   + +
Sbjct: 292 --------------EAPEFAKLTDAAGLEAFFAAGSGVRSALAVQLVPGRIGDDASALAV 337

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIM 490
             +          L     S L ++ ++    K+ H  K     LH  G+ + G  +D  
Sbjct: 338 VRNNGAAYIELAGLDAAAESVLARWLQDPEEAKVLHEFKSALKALHNRGLGLEGVVDDTS 397

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVI 549
           +  Y++   R S+D+A +AQ  L  +      +S +  + +   +D       ++++ V+
Sbjct: 398 ISGYLIQPDRRSYDLAELAQVHLKISLAAAAAQSGQLELDLSGDTDEVAATALVQHAAVV 457

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
             L      +L   K   +   L+ P+  V++QME+TGI +  D + +  A+++K + + 
Sbjct: 458 HALSKHFEKELAEIKADALLTTLELPVARVLAQMELTGIFVSTDRMDEQLADLTKVIENA 517

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
           +E  +   G + NL SPKQL  +LF +L  P   K K+G     A     +    +  + 
Sbjct: 518 QEQAFAAIGHEVNLGSPKQLQTVLFDELGLPKTKKIKSGYTTDAASLKGLLEKTGHEFLV 577

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            ++  R+ SK+ +   ++L   +     R+HT Y+     TGR++S  PNLQNIP++++ 
Sbjct: 578 QLMAHRESSKL-AQMVETLKKSV-ADDARIHTTYAQNIAATGRISSNNPNLQNIPVRSEE 635

Query: 730 GQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G+++R  F+       L+SADYSQIE+RI+AH++    L Q +++  D+HR V A IF V
Sbjct: 636 GRRVRSIFMVSEGYECLLSADYSQIEMRIMAHLSGDQALIQAYKDGEDLHRFVGARIFNV 695

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
              +V+  MR   K +++ + YG++ F L+ QL I   EA   +K Y+ RF  +  Y++ 
Sbjct: 696 EPAEVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKDYYDRFGAVRAYLDG 755

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
            ++  R +GY  TI GRR +  ++ S     R   ER A+N+PIQGSAADI +RAM+ V 
Sbjct: 756 VRDQARVDGYTATIEGRRRYLPDLTSTNRQAREAAERIALNSPIQGSAADIIKRAMLGVS 815

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
             L    L ++MLLQ+HDELV EV   E     ++++  M  A      L VPL V I V
Sbjct: 816 AELASQGLKSRMLLQVHDELVLEVAPGEREAVEKLVIEQMGSAA----ELSVPLDVQIGV 871

Query: 969 SNNWQEEN 976
            ++W E  
Sbjct: 872 GSSWYEAG 879


>gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500]
          Length = 1411

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 278/1151 (24%), Positives = 483/1151 (41%), Gaps = 198/1151 (17%)

Query: 1    MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            M  + H  ++DG+  +Y+AF  +PLL    DG P+NAI G+   + + L++ + +    +
Sbjct: 282  MVSKKHTLIIDGTPLLYKAFNGSPLL--SVDGQPINAIHGYTQSILRFLKDFKPD----Y 335

Query: 61   FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             A+ FD    +FR E+YP YK++RP +P+ L  Q  L+   + A GIP ++I  +E+DD+
Sbjct: 336  VALCFDPRGGSFRRELYPAYKSHRPPMPDDLQSQFALIDHLSDAIGIPVLKIDRYESDDL 395

Query: 121  IATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            IATYT IA + G  +TI+S DKDL+QLV +    +Y     E I    V ++ G+  E +
Sbjct: 396  IATYTRIANEAGHRITIVSDDKDLLQLVTNENISVYRPKSNEIIGESDVSERIGVDSEFV 455

Query: 180  VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               Q+L GD+ DNIPG+PG+G KTA  ++  +G+L++IL N   +   K +E I    + 
Sbjct: 456  TTFQSLVGDTSDNIPGVPGLGPKTAISIINSFGHLKDILENVENLPT-KLQEKIQNLKDQ 514

Query: 240  ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT------YD 293
              LS +LV L  +V +  PL+ L     N  +LI +L   +F ++ + +          +
Sbjct: 515  IHLSYQLVTLNKNVNVP-PLDSLKFNPINKTKLIEYLDRFKFQRIKDSLYKLDLPFEGEE 573

Query: 294  CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS------------------ 335
             +A  ++ +    +  ++K   +++ ++ D        S+                    
Sbjct: 574  INAGGVQALKSTKSRAKSKSKVVQSVVNEDQVDGDDIVSAADLVNFNDGDETTTDISVDS 633

Query: 336  ----------------DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQ 379
                            D   +  +   P       + +     I   + T + + +  + 
Sbjct: 634  ESKPKRKKRKSKMEVIDGVEEDAALTEPLDEIYVPVTEEEISRIRMPNVTVVNDVEKAKA 693

Query: 380  WVQKLETIGSA--SFKIITDTMDAFHSKPIA----IAISTLDQKDDTSFKVETIFIDLSV 433
             V +L ++     +       +D     PI     I  S     D        I      
Sbjct: 694  IVNQLLSLTYLYHACDTEVVDLDLKKQSPIGHGRIICFSVYCGPD--------IDFGTGS 745

Query: 434  HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLM 492
                D+ G+     EIL   + +FE+E   K+ HN  +D+ + + + I ++GF  D + M
Sbjct: 746  RLWVDTMGEQG--NEILEVFRPYFESESIYKVWHNYGFDRHIFYNHNIDVKGFGGDTLHM 803

Query: 493  SYVLDS---GRSSHDIASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQV---------- 538
            + + D+   GR  + +  ++++ L   +  I     K+ I  D +    +          
Sbjct: 804  ARLWDAARNGRGGYSLEGLSKELLDNHKTSIKDLFGKNKIKADGLPGKDIIVPPLEVIQR 863

Query: 539  --------QEHAIENSNVILQLWLLLRPKLI------VEKLLHVYERLDKPMIDVVSQME 584
                     E++  ++ +   L   L+ KL          +   Y  L +P   +++ ME
Sbjct: 864  HPKHLETWIEYSSLDAELTWNLRENLQAKLQNMVWMNDTNMWDFYHNLWRPFGHLLTDME 923

Query: 585  ITGIQIDQDLLKQVS----AEISKNLLSLEENIYDL--SGEKFNLSSPKQLGDILF---- 634
              G+++D + LK V      +I  N+ + ++       + +  N SS  Q+  +LF    
Sbjct: 924  RRGMKVDIEHLKTVEGVATKDIQDNMDAFQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTK 983

Query: 635  --------------------------------------TKLKFPSGAKTKTG-------- 648
                                                  + L  P G+ T +G        
Sbjct: 984  NVKTKEEMPLEREFETENTEGFIEEGKKKPKKMRPFLLSGLGLPFGSHTASGWPAVDSAS 1043

Query: 649  ------------------QWKTTAQDLEQINCGDNPIIKNI---LEWRQLSKIKSTYADS 687
                               +K  ++D E+         K I   LE   +  + S++   
Sbjct: 1044 LRDLAGNPSKGKYGKIFNHFKDKSEDKEKGEQEGIEASKAITSLLEIGSVGTLLSSFIIP 1103

Query: 688  LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
            L    +    RVHT  ++ +T TGRL+S  PNLQN P       KIR+AF   P   L+ 
Sbjct: 1104 LQKLCD-SNHRVHTSVNV-NTETGRLSSKRPNLQNQPALEKDRYKIRKAFTCEPGNTLVV 1161

Query: 748  ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP------------ 795
            ADY Q+ELR+LAHI     +   F+   D H   A  ++    E V              
Sbjct: 1162 ADYGQLELRLLAHITNCRSMINAFKIGGDFHSRTAMGMYPHVKEAVDRGDVLLEWDGDGE 1221

Query: 796  -----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
                         RR AKT+NFSI YG +   L+    +   EA + + R++   P +  
Sbjct: 1222 PPKPLLKDSFGAERRKAKTLNFSIAYGKTAHGLSKDWGVTLKEAQETLDRWYSDRPEVLL 1281

Query: 845  YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +  KT      + +  T+ GR     +I++P   ++  +ERA+IN P+QG AADI  +AM
Sbjct: 1282 WQRKTIQIANTHKWTRTLMGRYRMLPDIDNPAKGMKGHSERASINTPLQGGAADIVMKAM 1341

Query: 905  ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
            + + +     +L  ++++QIHDEL+ E PE+    A +I++  M         L V L V
Sbjct: 1342 LMIEEDKRLKELGFQLIMQIHDELILEGPEQHAKEAREIVMRLMSNPL--NTPLLVELVV 1399

Query: 965  NIKVSNNWQEE 975
            + + +  W E 
Sbjct: 1400 DCRFAKTWYEA 1410


>gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 778

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 282/872 (32%), Positives = 457/872 (52%), Gaps = 105/872 (12%)

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIE 166
           +I GFEADDI+ TY+ IA  EG    II+ DKD  QLV+    +Y T K     E+I  E
Sbjct: 2   DIDGFEADDIVGTYSKIARDEGLETVIITGDKDYFQLVNDDVIVYLTRKGISQMEEITEE 61

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            + + +G+ P++++ ++ L GD  DNIPG+ GIG KTA                   IK+
Sbjct: 62  KIKEDYGLSPKQLIDVKGLMGDKSDNIPGVDGIGEKTALKY----------------IKK 105

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
               E++ E  +                           D +G +    L+       ++
Sbjct: 106 YGSMEDLYENLD---------------------------DISGKKTKENLENSRQIAFLS 138

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           +   T   +A    PV  +I+    K   +E+  ++ +    ++F    +  S +  E+ 
Sbjct: 139 KKIGTIVTNA----PVDYEISDLRVKDPDMESLKEKFSKYNFNKFLEKFEDGSDVQREEL 194

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
                             + SY+    T D    +  +E      FK I +  +  HSK 
Sbjct: 195 ------------------DFSYS---FTDDDFSVIDDIEKDKIFYFKTIFENDNYIHSKA 233

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             IAI +   K                             ++ +   KK+FE+E+  K+ 
Sbjct: 234 FKIAIKSPSSKTFIYNP----------------------DQKFVDNFKKYFEDENINKVS 271

Query: 467 HNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK 522
            +IK D ++ ++ GI +   ++DIMLM Y++D  RSS+D+ + +Q +L Y     +++L 
Sbjct: 272 FDIKEDIVLFNKLGIEINFPYDDIMLMHYLIDPSRSSYDLKTFSQAFLKYEVLNEEDLLG 331

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             ++      +S+ ++ ++     N I     +L  KL    +  +Y+  +  +  V++ 
Sbjct: 332 KGRNKKSYKDLSEKELGKYLSSIINAIEDSLDILTDKLKELSMYELYKDCEIKLSKVLAD 391

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           MEITG   D++ L+++  E+S  L  LE+ IY+L+G +FN++SPKQL  ILF  L+ P  
Sbjct: 392 MEITGFVCDKNELEKIKDEVSVELEGLEKIIYELAGSEFNINSPKQLSIILFEDLELPII 451

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T A+ LE++    +PII  I  +R++ K+KSTY +SL   I+    R+ + 
Sbjct: 452 KKTKTG-YSTDAKVLEKLR-DKHPIIGKIERYREMYKLKSTYLESLEECIDGDG-RIRST 508

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           +    T TGRL+S EPNLQN+PI+T+ G+KIR+AF +   K LI ADYSQIELR+LAH+A
Sbjct: 509 FKQNVTATGRLSSTEPNLQNLPIRTEEGRKIRKAFKADNEKILIDADYSQIELRVLAHLA 568

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               + + F + +DIH   A+E+F   I++V+   R  AK +NF IIYGIS + L+  L 
Sbjct: 569 NDKKMQEAFSHDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLN 628

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR  A +YI+ Y + +P I +Y++      ++ G+V TIF RR +  EINS   ++R+ 
Sbjct: 629 IPRKRAKEYIENYLNTYPQIKKYMKDIVKKAKEEGFVNTIFNRRRYVPEINSKNFNVRSF 688

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER A+N PIQGSAADI + AMI+ +++L+  K+  K++LQIHDE++ E  ++++  A +
Sbjct: 689 GERVALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIEASKKDLQKAKE 748

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I+  SME+A    +NL+VPL V+I   ++  E
Sbjct: 749 ILKSSMEEA----VNLKVPLLVDIDSGDSMYE 776


>gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
 gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
          Length = 875

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/976 (26%), Positives = 430/976 (44%), Gaps = 107/976 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++DG+S ++RA++A P      DG P NA+ GF  ML K +  +  ++        
Sbjct: 3   KKIAVIDGNSLMHRAYHAVPQTMNAPDGRPTNAVFGFIAMLLKFIDIASPDA----LICA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR E    YK+ RP + + L  Q P++    +A  +P + I+G+E DD++ T 
Sbjct: 59  FDAGRPAFRMEALEQYKSQRPPMDDDLKVQFPIIEELLEAMNVPVVRIKGWEGDDVLGTI 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               E+ G+   +++ DKD  QL +  T +             V  K GI       +  
Sbjct: 119 AARDEELGYETLLVTGDKDAYQLATDMTRI-------------VTTKKGIT-----DVAI 160

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
                +    G+           L   G+  + +     I  K   + +  Y        
Sbjct: 161 YGPAEVLERYGVR---PDQFIDFLGLKGDSSDNIPGVPGIGDKTAAKLLQTYGS------ 211

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L  +   V     L+    E     + ++FL   +   ++  +    D +A +      
Sbjct: 212 -LEGIYEHVD---DLKGKQKEKIVDNKDMAFLSR-DVATIVRDLDFPLDLEACSFPSFDS 266

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           +  T   KG+     + R   +   +                             +    
Sbjct: 267 EKVTEAFKGVQFNAHLGRVLKLVGKEL----------------------------EKKAA 298

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGS---ASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +   +V+  +    V      G     +F I  + +  F++    +  +    +    
Sbjct: 299 PLAVEPVVSGSEAHALVDAAVARGETVGVAF-IEPEQVSLFNA---GLHCAVNTSEGTAL 354

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F+ +      +      S     + +E+    + +  +   + +  +    +L+  R   
Sbjct: 355 FEDDEGREAFARIVRAGSFAALDVKREVH---RVYPADTAKIALVEDA---ELMSMRA-- 406

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
                 D+ L  YVL+S  S +   ++   +      E           D+   +  Q  
Sbjct: 407 -----FDLGLAGYVLNSSVSEYSYDALLDAYCGGVLPE---------AKDEAGSAAAQAA 452

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A         L   L   L  ++    Y  +D P++ V++ +E TG  +D D L ++ A 
Sbjct: 453 AAR------MLVKPLTDALGRDESKRAYFDIDLPLVAVLAIVERTGAAVDCDRLAELGAT 506

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               L  L   I +++GE+FNL SPKQLG ILF  L   +  K + G     A   E   
Sbjct: 507 TQAELDELRARIIEIAGEEFNLDSPKQLGHILFEVLGLRTLKKNQRGYSTDAAVLKE--L 564

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D+ +   +L +R+L+KIKSTY D+LP        RVHT ++   T TGRL+S EPNLQ
Sbjct: 565 SNDHEMPALVLRYRELAKIKSTYIDALPRM-RADDGRVHTCFNETVTTTGRLSSSEPNLQ 623

Query: 722 NIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIP++T+ G++IR  F+      K +SADYSQIELR+LAH++    L   F +  D H  
Sbjct: 624 NIPVRTEFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAA 683

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+ +FG+ +E V+P++R  AK +NF I+YG   F L+  L IP  EA + I+RYF  +P
Sbjct: 684 TASRVFGLPVEDVTPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYP 743

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+++T    ++ GY ET+FGR+ H  E+ +  ++ R   ER A+N P+QGSAADI 
Sbjct: 744 GVRAYLDRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGSAADII 803

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM  V + + +     K+LLQ+HDEL F VPE EI   S I+   ME      ++LRV
Sbjct: 804 KLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEH----IVDLRV 859

Query: 961 PLKVNIKVSNNWQEEN 976
           PL V++  ++NW E +
Sbjct: 860 PLDVDVSYADNWAEAH 875


>gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 882

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/987 (25%), Positives = 421/987 (42%), Gaps = 122/987 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           K++ L L+DG S  +RAFYA    +   DG    NA++GF     KL+     +   +H 
Sbjct: 2   KDSTLLLIDGHSLAFRAFYALRAENFVTDGGQHTNAVSGFLTTFLKLIA----DYEPTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD P  TFR  +Y DYK  R + P     Q+ L++ +  A G+  + ++ +EADDI+
Sbjct: 58  AVAFDLPGGTFRTRMYGDYKGGRGETPAEFAGQIELIQQSLDAMGVRWLTVEDYEADDIV 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT +   E+ G  V I S DKD  QLV     +   +   +               +++ 
Sbjct: 118 ATLSARGEESGMQVYISSGDKDAFQLVDERCTVLYPMPRSET--------------QVLD 163

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
                 D + N  G+    Y+  A L+ E  N +NI      +  K   + I  Y     
Sbjct: 164 A-----DGVLNKTGVLPSNYRDLAALVGE--NADNI-PGVPGVGPKTAAKWIAAYGGVEE 215

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +   L     D           ++   G  L +  + +     +N +            P
Sbjct: 216 I---LA--HAD----------EIKGKAGESLRANAEQVRLNMTLNELVRDL--------P 252

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           +V DI            E  R   +  +   +L D     N           R    +  
Sbjct: 253 IVEDI------------EELRPIGVDRNALHALFDTLGFRNLRSRVLAEIPARGGGDADA 300

Query: 362 PINNDSYTKIVNTKDIQQWVQKLET-IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +  +    V+ +   +W+ ++E   G               + P   A++        
Sbjct: 301 --SGKAAEVFVSREPFAEWLAQVEGPCGVVLVDS--------DALPSGGAVAVGAPGGKA 350

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
             +                       K+    L  F  +    K+ H  K     L   G
Sbjct: 351 WVRQW---------------------KDDAEALGAFLADPGRPKVLHGAKGAGHALRNIG 389

Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           + + G   D +L +Y+L   +  +D+  +  ++L    +EI   +  +   D +      
Sbjct: 390 VELDGVRRDTLLQAYLLHPDQRVYDLDDLVIRYLG---REIEGRKSPATLFDDVDSDDGA 446

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
                 +  +++L      +L           L+  +   + +ME  GI +D+ LL+Q+ 
Sbjct: 447 ----AAAAALVELADAFDSELAERGEDGALLDLEMAVSRTLGEMEDAGIAVDEGLLEQLR 502

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD--- 656
            +    + +   + YD  G + NLSSPKQL ++LF +L  P   K K+G           
Sbjct: 503 QDFDGRVFAAARSAYDAIGGEVNLSSPKQLQEVLFDQLGLPPTRKMKSGHTTNADALANL 562

Query: 657 -------LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
                   +         + ++LE R   K++ +    L   +  R  R+HT +   +  
Sbjct: 563 AVSIAGREDDKALAGQQFLASLLEHRDAIKLRQSVVG-LQRSV--RDGRIHTTFQQTAAA 619

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLY 768
           TGRL+S +PNLQNI  +T  G+ IR AF+     + +++ADYSQIE+R++A ++    L 
Sbjct: 620 TGRLSSTDPNLQNIHARTAEGRSIRAAFVPGEGYESIMTADYSQIEMRLMAALSGDVELI 679

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    D+H  VA+ ++GV  EKV+   R H K +++ + YG+S + L+ QLRI  ++A
Sbjct: 680 EAFREGADLHTYVASRVYGVPEEKVTADDRSHIKAMSYGLAYGLSAYGLSKQLRISVAQA 739

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
              +  YF RF  +  Y++      R+ GY +TI GRR +  ++NS     R   ER A+
Sbjct: 740 QALMDDYFSRFGRVRTYLDSLVQEARKEGYTQTILGRRRYLPDLNSTNRQAREAAERMAL 799

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NAPIQGSAAD+ + AM++V  S+++  + +++LLQ+HDELV E+   E      ++   M
Sbjct: 800 NAPIQGSAADVIKLAMVAVVDSMKE--MRSRVLLQVHDELVLEIAPGERDAVEAVVRREM 857

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E A    + L VPL V I V ++W+E 
Sbjct: 858 ENA----VELAVPLSVGIGVGSSWREA 880


>gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 635

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 209/672 (31%), Positives = 337/672 (50%), Gaps = 64/672 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML +L+   +     +H AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKRLISQVQ----PTHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A   G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  ++TDV + +  + L+L +    +LI +    EF + +N V    D     
Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSITQT 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E                         +K +Q+ + S     +  E TP+          
Sbjct: 302 TEQ-----------------------PVKINQYQATSQDQRAV--ENTPK---------- 326

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               I+   Y  ++   D+ +W++KL T    +    TD++D   +  + I+ + L+  +
Sbjct: 327 --IQIDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++  ++D           K       L+ +K   EN +  KIG NIK+D+ +  R
Sbjct: 384 AAYLPLQLDYLDAP---------KTLEKSTALAAIKPILENPNIHKIGQNIKFDESIFAR 434

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +GI ++G   D ML+SY L+S    H++  +A+++L +     + +    KS +  ++I 
Sbjct: 435 HGIELQGVEFDTMLLSYTLNST-GRHNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIP 493

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  E+A E+++V ++L   L  KL  E  L+ +Y+ ++ P++ V+S+ME TG+ ID D
Sbjct: 494 LEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSD 553

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P   K +  + +  
Sbjct: 554 ALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKRQKVRHQQM 613

Query: 654 AQDLEQINCGDN 665
            +  +      N
Sbjct: 614 KKYWKNYPIATN 625


>gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
 gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
          Length = 875

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 261/976 (26%), Positives = 430/976 (44%), Gaps = 107/976 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++DG+S ++RA++A P      DG P NA+ GF  ML K +  +  ++        
Sbjct: 3   KKIAVIDGNSLMHRAYHAVPQTMNAPDGRPTNAVFGFIAMLLKFIDIASPDA----LICA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR E    YK+ RP + + L  Q P++    +A  +P + I+G+E DD++ T 
Sbjct: 59  FDAGRPAFRMEALEQYKSQRPPMDDDLKVQFPIIEELLEAMNVPVVRIKGWEGDDVLGTI 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               E+ G+   +++ DKD  QL +  T +             V  K GI       +  
Sbjct: 119 AARDEELGYETLLVTGDKDAYQLATDMTRI-------------VTTKKGIT-----DVAI 160

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
                +    G+           L   G+  + +     I  K   + +  Y        
Sbjct: 161 YGPAEVLERYGVR---PDQFIDFLGLKGDSSDNIPGVPGIGDKTAAKLLQTYGS------ 211

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            L  +   V     L+    E     + ++FL   +   ++  +    D +A +      
Sbjct: 212 -LEGIYEHVD---DLKGKQKEKIVDNKDMAFLSR-DVATIVRDLDFPLDLEACSFPSFDS 266

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           +  T   KG+     + R   +   +                             +    
Sbjct: 267 EKVTEAFKGVQFNAHLGRVLKLVGKEL----------------------------EKKAA 298

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGS---ASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +   +V+  +    V      G     +F I  + +  F++    +  +    +    
Sbjct: 299 PLAVEPVVSGSEAHALVDAAVARGETVGVAF-IEPEQVSLFNA---GLHCAVNTSEGTAL 354

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F+ +      +      S     + +E+    + +  +   + +  +    +L+  R   
Sbjct: 355 FEDDEGREAFARIVRAGSFAALDVKREVH---RVYPADTAKIALVEDA---ELMSMRA-- 406

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
                 D+ L  YVL+S  S +   ++   +      E           D+   +  Q  
Sbjct: 407 -----FDLGLAGYVLNSSVSEYSYDALLDAYCGGVLPE---------AKDEAGSAAAQAA 452

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A         L   L   L  ++    Y  +D P++ V++ +E TG  +D D L ++ A 
Sbjct: 453 AAR------MLVKPLTDALGRDESKRAYFDIDLPLVAVLAIVERTGAAVDCDRLAELGAT 506

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               L  L   I +++GE+FNL SPKQLG ILF  L   +  K + G     A   E   
Sbjct: 507 TQAELDELRARIIEIAGEEFNLDSPKQLGHILFEVLGLRTLKKNQRGYSTDAAVLKE--L 564

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D+ +   +L +R+L+KIKSTY D+LP        RVHT ++   T TGRL+S EPNLQ
Sbjct: 565 SNDHEMPALVLRYRELAKIKSTYIDALPRM-RADDGRVHTCFNETVTTTGRLSSSEPNLQ 623

Query: 722 NIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIP++T+ G++IR  F+      K +SADYSQIELR+LAH++    L   F +  D H  
Sbjct: 624 NIPVRTEFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAA 683

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+ +FG+ +E VSP++R  AK +NF I+YG   F L+  L IP  EA + I+RYF  +P
Sbjct: 684 TASRVFGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYP 743

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+  Y+++T    ++ GY ET+FGR+ H  E+ +  ++ R   ER A+N P+QGSAADI 
Sbjct: 744 GVRAYLDRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGSAADII 803

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM  V + + +     K+LLQ+HDEL F VPE EI   S I+   ME      ++LRV
Sbjct: 804 KLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEH----IVDLRV 859

Query: 961 PLKVNIKVSNNWQEEN 976
           PL V++  ++NW E +
Sbjct: 860 PLDVDVSYADNWAEAH 875


>gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1]
 gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 866

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 264/978 (26%), Positives = 449/978 (45%), Gaps = 122/978 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LF++D S F++RA++A P + R  +G    A+ GF   L KL+++   E    +   +
Sbjct: 2   KKLFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPE----YVVAV 56

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R E+Y DYK+NR +  E L  Q+ LV+   +  GI  +E +G EADD+IA+
Sbjct: 57  FDGPNNKQSRQELYADYKSNRDRQLEDLPEQIRLVKQYCELLGISCLEEKGVEADDVIAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            T  A  +GF V I + DKDL+QLVS    +++  KE++I    V+ ++G+P        
Sbjct: 117 ITKKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLLQFGVP-------- 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
                             +  A  L   G+  + +   S    KK +  + E+       
Sbjct: 169 -----------------PEQIADYLALVGDSSDNIPGVSGCGPKKAQALLKEFQ------ 205

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL----EFTKLINRVATTYDCDAANI 299
                          +E L+    N  RL    K +    + T L+++   T   D A  
Sbjct: 206 --------------SVEELV---ANTERLSGKTKQMIEDQKETLLLSKRLATLHMDLA-- 246

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                     + T +F+                +   + L K S
Sbjct: 247 ------------------------FPLTTEEFAFSPQAIDSAQLNTFYLQHGFKALVKHS 282

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   ++ +   + +   ++  +++L+  G   +            +   +A++  +Q   
Sbjct: 283 ETATSSIAVQTVTDPVTLKTVLEQLKG-GEVGYCAAYTGEHLPSLQLHGVALAGANQ--- 338

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   +I++S                 ++ LK FF ++     G+  K D   L   
Sbjct: 339 ------VFYIEVSGVQE-------------IALLKDFFADKATQFFGYRSKRDNHALRNS 379

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIPIDKISDSQ 537
           GI +    D++L  +++ SG +     ++  +                 S+P+  +    
Sbjct: 380 GIDVHVTADLVLAEHLV-SGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDP 438

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             ++    ++ +L +   L  KL  + L  ++E +++P+  V+  ME  G+ +D   L  
Sbjct: 439 A-QYFGMFASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAV 497

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  +++K L    + IYDL+G +FN+ SPKQL DIL+ +L      K K+     T  ++
Sbjct: 498 LDRDLTKELEECSQEIYDLTGCEFNIKSPKQLSDILYQRLGIEPVDKAKS-----TKAEV 552

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +     + II  IL +R   K+ STY  +LP  IN  TQR+H  ++   T+TGRL+  +
Sbjct: 553 LEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQD 612

Query: 718 PNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP++++ G+ +R AF +       ++ADYSQIELR LAH+++   L + F +  D
Sbjct: 613 PNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDETLKRAFNSGED 672

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+++F V +E+V+ Q R  AK +NF ++YG   + L+  L+I  SEA   +  YF
Sbjct: 673 IHAFTASQVFNVPLEQVTKQERYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYF 732

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P   E+I +T     +N  V T+ GR     +  S     R  + R A+N  IQGSA
Sbjct: 733 ARYPLAAEFITQTIEQASKNQKVTTMLGRERILSDWESS-PGARAASGRLAVNTRIQGSA 791

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           A++ + AM+++   +    L +++LLQIHDEL+FEVP EE+     ++   ME A     
Sbjct: 792 AELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAM---- 847

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL VN+ +  NW E
Sbjct: 848 ELSVPLVVNVLIGKNWAE 865


>gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 865

 Score =  589 bits (1518), Expect = e-165,   Method: Composition-based stats.
 Identities = 261/980 (26%), Positives = 447/980 (45%), Gaps = 130/980 (13%)

Query: 5   NHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L L+DG+S ++RA+YAT    + +  +G+P NA+ GF  M+ K       +       
Sbjct: 6   KKLLLIDGNSMLFRAYYATVYGRMMKTSNGIPTNAVYGFITMINKAFDMIHPDM----VL 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D    TFR+E Y +YK  R ++ + L+ Q P+ R    A+G+   E  G EADDII 
Sbjct: 62  VAWDSGKPTFRHETYTEYKGTRKELDQELIVQFPIAREYLDAYGLQRYECDGIEADDIIG 121

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
                       + I+S+D+DL+QL+ PTT +Y                  +  + +  +
Sbjct: 122 CMARQ--HPELEIHILSSDRDLLQLIDPTTDVY------------------LMKKGISEI 161

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-KKRRENILEYAETAR 241
           + +  + +    GI          L+           +A  I   K   E          
Sbjct: 162 EVMNEEKLMETMGIKPSQIIDLKALMG---------DSADNIPGVKGIGEK--------- 203

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
                                          +  LK  +          T D   A+IE 
Sbjct: 204 -----------------------------TALKLLKEYD----------TVDNVYAHIEE 224

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           +   +                  TIKT +   +      +   +     F  + +  S  
Sbjct: 225 IKGKLKEKLETDREKAFLSKYLATIKTDETLPIDITALMLQPPKEELHDFYIKYEMNSFA 284

Query: 362 PINNDSYTKIVN-TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                      + T  + Q + +    G +      D  + + +     A+S  ++ +  
Sbjct: 285 KNTRKKEEVTRDGTYAVVQKISEAFYDGHSVVYADIDNENYYDATLYGFALSKENKNE-- 342

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  +I L       +  +   TK                K  ++ K      H+  
Sbjct: 343 -------YITLEDARKDPAFLQYLATKND--------------KAVYDAKNFYHACHKNN 381

Query: 481 -ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS----YTRKEILKSRKSSIPIDKISD 535
            I++    DIML ++++D   S ++   +A+K+      +      K  K  +    I  
Sbjct: 382 LIAVDVNFDIMLAAFLVDQTISDYE--KLAEKYHFDQSIHKEDIYGKKGKPKL----IDF 435

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +Q  ++A+  +  +  +  LL   L   ++  +++ ++ P+  V+  ME  G+  D+ +L
Sbjct: 436 AQQSKYAMLQAENLYSIVALLDETLQEMEMKDLFDTIEMPLTRVLYAMEKEGVYCDKAVL 495

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           ++++ E    + +L   IY+++G +FN++SPKQL  +L+ +L   +G K      ++TA 
Sbjct: 496 QKIADETEAKINALSLQIYEIAGMEFNINSPKQLASVLYDELGLKAGKK------RSTAA 549

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+ +     +PII  +LE R+  KI STYA  L  HI    + +HT ++   T TGRL+S
Sbjct: 550 DVLEKLVHVHPIIPLLLEHRKYQKIYSTYAIGLAKHILADGK-IHTLFNQIQTQTGRLSS 608

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
            EPNLQNI ++ + G+ IR+AF++     L+SADYSQIELR+LAH+A    +   F + +
Sbjct: 609 SEPNLQNISVRNEEGKGIRKAFVASEGHVLLSADYSQIELRMLAHMADEEQMIDAFNHDI 668

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIH   A +IF V  ++V   MRR AKT+NF I+YG S F L+ QL I R EA  +I++Y
Sbjct: 669 DIHTKTAMQIFDVAHDEVDANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHTFIEKY 728

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P I  +++ T  +  ++GYV+T++ RR +  EI      +R   +RAA+NAPIQGS
Sbjct: 729 FASYPKIKTFMDATIAYCEEHGYVKTLYNRRRYIKEIADKNYMMREFGKRAAMNAPIQGS 788

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AAD+ + AMI +++ +++ K+ ++M+LQIHDEL+F+V E+EI   +QI+   M+      
Sbjct: 789 AADLIKMAMIHIYQKMQEEKVKSRMILQIHDELIFDVCEDEIDKMTQIVEEGMQNVM--- 845

Query: 956 INLRVPLKVNIKVSNNWQEE 975
             L+VPL     +  +W + 
Sbjct: 846 -KLKVPLIAQANIGKSWYDA 864


>gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
 gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
          Length = 904

 Score =  588 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 261/986 (26%), Positives = 436/986 (44%), Gaps = 102/986 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  YRAF+A P  +     G   NA+ GF +ML  +L++ +     +H AV 
Sbjct: 3   RLLLLDGHSLAYRAFFALPAENFSTATGQHTNAVYGFTSMLINVLRDEQ----PTHVAVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E Y +YKA R K P+    Q+ LV+    A GI  +  +GFEADD+IAT 
Sbjct: 59  FDLSRQTFRSEEYAEYKAGRAKTPDEFAGQVSLVQEVLDAMGIAHVSKEGFEADDVIATL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  A   G  V I S D+D +QLV     +    K                   +  L  
Sbjct: 119 TTAARSAGMEVLICSGDRDALQLVDEKVTVLYPRKG------------------VSDLAR 160

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           +T  +++   G+P   Y   A L+ E  + +N L     +  K   + +  Y +      
Sbjct: 161 MTPTAVEEKYGVPPERYSDLAALVGE--SADN-LPGVPGVGPKTAAKWLGLYGDLGG--- 214

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
             V+   D       ++          L   L+     +L+  V      DAA  +    
Sbjct: 215 --VVDHADAIKGKAGQNF------RDHLDQVLRNRRLNQLVTDVELPLTLDAAAWDTFDR 266

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
           +        +      DR       + + +++      S   P  L       L+ +P  
Sbjct: 267 EKVHEVFDALEFRVLRDRMFEYLGVEGAEVTEAVQVQTSLIAPDAL----ADWLAAHPEG 322

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
                 +            L    S + +          ++P  +A+++  +        
Sbjct: 323 VLGLELV------------LPAPASVAGR--------HRTEPQGLALASEQE-------- 354

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
            T + +L+  T  D      L       L           + H++K     L   G+ + 
Sbjct: 355 -TGWFELAGRTPADEAALAALLAAAGDRL-----------VVHDVKRVVHALREIGLRLE 402

Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKSRKSSIPIDKIS-----DS 536
               D  L +Y++   + S+D+A +  + L       E     ++     ++       +
Sbjct: 403 TVAVDTALAAYLVRPDQRSYDLADLCLRHLQRELPTAEDSGPGEALFDASEVDGSTDGLT 462

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
                A   +  + +L  +L+ ++       +   L+ P+   +  ME TGI +D D L 
Sbjct: 463 TAARTAALRAAAVRELAPVLQQEVEDIGAAGLERDLELPLARHLVAMEATGIAVDTDRLD 522

Query: 597 QVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT-TA 654
            +  E +  +     + +    +   NL SPKQL ++LF +L  P   KTKTG      A
Sbjct: 523 ALEGEFADQVAQATADAHAAIDDPGVNLGSPKQLQEVLFERLGLPKTKKTKTGYTTDADA 582

Query: 655 QDLEQINCGD----NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
               +    +       ++ +L  R +++++ST    L   ++    R+HT Y      T
Sbjct: 583 LVWLRAQASEGSTAETFLEALLRHRDVTRLRST-VQGLQKAVDADG-RIHTTYQQTIAAT 640

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S++PNLQNIPI+T+ G++IR  F+       L+SADYSQIE+RI+AH++    L +
Sbjct: 641 GRLSSVDPNLQNIPIRTEAGRRIREVFVVGSGFDHLMSADYSQIEMRIMAHLSGDEGLIE 700

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    D+HR V +++F V  E+V+ +MR   K +++ + YG+S F L+ QL I  +EA+
Sbjct: 701 AFRAGEDLHRYVGSKVFQVAPEEVTAEMRAKVKAMSYGLAYGLSSFGLSKQLGITPAEAS 760

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             +  YF RF G+ +Y+    +  R+ GY ET+ GRR    ++ S     R + ER A+N
Sbjct: 761 ALMDEYFARFGGVRDYLRAVVDEARRTGYTETMLGRRRPLPDLASTNRQRREMAERMALN 820

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           APIQGSAAD+ + AM+ V  +L+  +LA+++LLQ+HDELV EV  +E +    ++  +M 
Sbjct: 821 APIQGSAADVMKLAMLKVEDALDAQRLASRVLLQVHDELVLEVAPDEGSAVEALVREAMG 880

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    ++L VPL V+I    +W + 
Sbjct: 881 SA----LDLDVPLDVSIGTGRSWHDA 902


>gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684]
 gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684]
          Length = 884

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 266/976 (27%), Positives = 436/976 (44%), Gaps = 119/976 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K + LFL+DG+S  YRAF+A P       G P NAI GF +ML K+L      +      
Sbjct: 24  KPDELFLIDGNSLAYRAFFALPESIATSTGFPTNAIFGFASMLVKILTEYGPRAT----I 79

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D    + R E+YP+YKA R   P++   Q P +    ++FG   + + G+EADD+IA
Sbjct: 80  VAWD-RGHSGRREVYPEYKAQRSSRPDLFKQQWPHLEPLVESFGYQNVSLDGYEADDVIA 138

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A+  G  V +++ D+D  QLV     +  T +             GI   +    
Sbjct: 139 TLAERAKAAGIPVMVVTGDRDSFQLVDEGVQIMATSR-------------GITETRTYDR 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q +      +  GIP    +     +   G+  + +     I  K               
Sbjct: 186 QGVI-----DRYGIP---PELVPDFIGLKGDTSDNIPGVPGIGDKTAA------------ 225

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
             +L+    D+   +   H I        LI   +    +K +  +    +         
Sbjct: 226 --QLLNDFGDLEGVLANAHTIRARKRRENLIEHAEDARVSKQLATMRRDLEVAIDVAAVH 283

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
             + + +  +    E E+               +   +  +E+                 
Sbjct: 284 GAEPDRSRLRETFREFELRDPLRRLEEALGDGDEAAPRPQAERAIGAK------------ 331

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                    + T  +          G  +             +P     +   + D   F
Sbjct: 332 ---------LRTGAVADLASLAPAGGEIALA---------AREPEKPDDALFGESDAWRF 373

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV---LHRY 479
                   L+     D+        E+L+             + H+ K  + V   L   
Sbjct: 374 GAYAGQDALAGECGGDAGP------EVLAA-----AIGERPALAHDAKALREVPATLA-- 420

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
                   D ++ +Y+L+  R S+ +  + ++                I  D      V+
Sbjct: 421 -------HDTLIAAYLLEPARRSYPLDELTEE--------------RGIGTD------VE 453

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           + A  ++ ++  L    RP+L   +LL +++ ++ P++ V+  ME  G+++D +LL  + 
Sbjct: 454 DAAAADAILVHALTAAQRPQLEERELLPLFDDVELPLVRVLRAMETAGLRLDTELLATIR 513

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
             +    ++LE  I++L+GE+F + SP+QLG ILF KL      + KTG   +T   + Q
Sbjct: 514 TRVMDEAVALEREIWELTGEEFMIGSPQQLGQILFEKLGLSRKRRGKTGY--STDARVLQ 571

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              G++P+I+ I  WR+L+K+ STY D+LP  I+    R+HT ++  +  TGRL+S  PN
Sbjct: 572 AIRGEHPVIEKIERWRELTKLASTYLDALPLLISPEDHRLHTTFNQVTAATGRLSSTNPN 631

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+T LG++IR  F++ P   LISADYSQ+ELR+LAHIA    L ++F    D+H 
Sbjct: 632 LQNIPIRTPLGREIRACFVAEPGNVLISADYSQVELRVLAHIAGEEVLKEIFRRGEDVHT 691

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AA I G++ E++    R  AK +N+ I+YG+S F LA +L+IPR EA ++I RY   F
Sbjct: 692 ATAAAILGIDPEQLDAGSRSKAKMVNYGIVYGLSAFGLADRLQIPREEAQEFIDRYLDGF 751

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P +  +I  T       GYV T+ GRR    E+ +    +R + ER A+N  IQG+AAD+
Sbjct: 752 PAVQAFIRTTIEQATDQGYVTTLMGRRRQIPELRARNYQMRQLGERLAVNTVIQGTAADV 811

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++  ++L    L T+++LQIHDEL+FE P EE   A  ++V  M  A    + L 
Sbjct: 812 IKLAMVNADRALHASGLRTRLILQIHDELLFEGPAEEAEQARDLVVPQMVDA----LELD 867

Query: 960 VPLKVNIKVSNNWQEE 975
            PL V+  +  NW + 
Sbjct: 868 PPLVVDAGIGPNWLDA 883


>gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276]
 gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s]
 gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768]
 gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222]
 gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074]
 gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301]
          Length = 866

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 262/978 (26%), Positives = 448/978 (45%), Gaps = 122/978 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LF++D S F++RA++A P + R  +G    A+ GF   L KL+++   E    +   +
Sbjct: 2   KKLFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPE----YVVAV 56

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R E+Y DYK+NR +    L  Q+ LV+   +  GI  +E +G EADD+IA+
Sbjct: 57  FDGPNNKQSRQELYADYKSNRDRQLGDLPEQIRLVKQYCELLGISCLEEKGVEADDVIAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            T  A  +GF V I + DKDL+QLVS    +++  KE++I    V+ ++G+P        
Sbjct: 117 ITKKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLSQFGVP-------- 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
                             +  A  L   G+  + +   S    KK +  + E+       
Sbjct: 169 -----------------PEQIADYLALVGDSSDNIPGVSGCGPKKAQALLKEFQ------ 205

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL----EFTKLINRVATTYDCDAANI 299
                          +E L+    N  RL    K +    + T L+++   T   D A  
Sbjct: 206 --------------SVEELV---ANTERLSGKTKQMIEDQKETLLLSKRLATLHMDLA-- 246

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                     + T +F+                +   + L K +
Sbjct: 247 ------------------------FPLTTEEFAFSPQAIDSAQLNTFYLQHGFKALVKHA 282

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   ++ +   + +   ++  +++L+  G   +            +   +A++  +Q   
Sbjct: 283 ETATSSIAVQTVTDPVTLKTVLEQLKG-GEVGYCAAYTGEHLPSLQLHGVALAGANQ--- 338

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   +I++S                 ++ LK FF ++     G+  K D   L   
Sbjct: 339 ------VFYIEVSGVQE-------------IALLKDFFADKATQFFGYRSKRDNHALRNS 379

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIPIDKISDSQ 537
           GI +    D++L  +++ SG +     ++  +                 S+P+  +    
Sbjct: 380 GIDVHVTADLVLAEHLV-SGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDP 438

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           + ++    ++ +L +   L  KL  + L  ++E +++P+  V+  ME  G+ +D   L  
Sbjct: 439 L-QYFGMLASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAV 497

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  +++K L    + IYDL G +FN+ SPKQL DIL+ +L      K K+     T  ++
Sbjct: 498 LDRDLTKELEECSQEIYDLVGCEFNIKSPKQLSDILYQRLGIEPVDKAKS-----TKAEV 552

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +     + II  IL +R   K+ STY  +LP  IN  TQR+H  ++   T+TGRL+  +
Sbjct: 553 LEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQD 612

Query: 718 PNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP++++ G+ +R AF +       ++ADYSQIELR LAH+++   L + F +  D
Sbjct: 613 PNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGED 672

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+++F V +E+V+ Q R  AK +NF ++YG   + L+  L+I  SEA   +  YF
Sbjct: 673 IHAFTASQVFNVPLEQVTKQQRYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYF 732

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P   E+I +T     +N  V T+ GR     +  S     R  + R A+N  IQGSA
Sbjct: 733 ARYPLAAEFITQTIEQASKNQKVTTMLGRERILSDWESS-PGARAASGRLAVNTRIQGSA 791

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           A++ + AM+++   +    L +++LLQIHDEL+FEVP EE+     ++   ME A     
Sbjct: 792 AELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAM---- 847

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL VN+ +  NW E
Sbjct: 848 ELSVPLVVNVLIGKNWAE 865


>gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC]
 gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC]
          Length = 868

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 262/978 (26%), Positives = 448/978 (45%), Gaps = 122/978 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LF++D S F++RA++A P + R  +G    A+ GF   L KL+++   E    +   +
Sbjct: 4   KKLFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPE----YVVAV 58

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R E+Y DYK+NR +    L  Q+ LV+   +  GI  +E +G EADD+IA+
Sbjct: 59  FDGPNNKQSRQELYADYKSNRDRQLGDLPEQIRLVKQYCELLGISCLEEKGVEADDVIAS 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            T  A  +GF V I + DKDL+QLVS    +++  KE++I    V+ ++G+P        
Sbjct: 119 ITKKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLSQFGVP-------- 170

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
                             +  A  L   G+  + +   S    KK +  + E+       
Sbjct: 171 -----------------PEQIADYLALVGDSSDNIPGVSGCGPKKAQALLKEFQ------ 207

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL----EFTKLINRVATTYDCDAANI 299
                          +E L+    N  RL    K +    + T L+++   T   D A  
Sbjct: 208 --------------SVEELV---ANTERLSGKTKQMIEDQKETLLLSKRLATLHMDLA-- 248

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                     + T +F+                +   + L K +
Sbjct: 249 ------------------------FPLTTEEFAFSPQAIDSAQLNTFYLQHGFKALVKHA 284

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   ++ +   + +   ++  +++L+  G   +            +   +A++  +Q   
Sbjct: 285 ETATSSIAVQTVTDPVTLKTVLEQLKG-GEVGYCAAYTGEHLPSLQLHGVALAGANQ--- 340

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   +I++S                 ++ LK FF ++     G+  K D   L   
Sbjct: 341 ------VFYIEVSGVQE-------------IALLKDFFADKATQFFGYRSKRDNHALRNS 381

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIPIDKISDSQ 537
           GI +    D++L  +++ SG +     ++  +                 S+P+  +    
Sbjct: 382 GIDVHVTADLVLAEHLV-SGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDP 440

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           + ++    ++ +L +   L  KL  + L  ++E +++P+  V+  ME  G+ +D   L  
Sbjct: 441 L-QYFGMLASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAV 499

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  +++K L    + IYDL G +FN+ SPKQL DIL+ +L      K K+     T  ++
Sbjct: 500 LDRDLTKELEECSQEIYDLVGCEFNIKSPKQLSDILYQRLGIEPVDKAKS-----TKAEV 554

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +     + II  IL +R   K+ STY  +LP  IN  TQR+H  ++   T+TGRL+  +
Sbjct: 555 LEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQD 614

Query: 718 PNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP++++ G+ +R AF +       ++ADYSQIELR LAH+++   L + F +  D
Sbjct: 615 PNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGED 674

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+++F V +E+V+ Q R  AK +NF ++YG   + L+  L+I  SEA   +  YF
Sbjct: 675 IHAFTASQVFNVPLEQVTKQQRYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYF 734

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P   E+I +T     +N  V T+ GR     +  S     R  + R A+N  IQGSA
Sbjct: 735 ARYPLAAEFITQTIEQASKNQKVTTMLGRERILSDWESS-PGARAASGRLAVNTRIQGSA 793

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           A++ + AM+++   +    L +++LLQIHDEL+FEVP EE+     ++   ME A     
Sbjct: 794 AELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAM---- 849

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL VN+ +  NW E
Sbjct: 850 ELSVPLVVNVLIGKNWAE 867


>gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 919

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 233/884 (26%), Positives = 385/884 (43%), Gaps = 95/884 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L L+DG S  YRAF+A P  +     G P NAI GF +ML   L++ +     +HFA
Sbjct: 123 RPRLMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASMLANTLRDEQ----PTHFA 178

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    T+R E + +YKANR K P+    Q+ L+             ++GFEADDIIA
Sbjct: 179 VAFDVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIA 238

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE  GF V I++ D+D  QLVS  T +    K      +   E V +++G+ P +
Sbjct: 239 TLATQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQ 298

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G                          K   + I ++  
Sbjct: 299 YPDFAALRGDPSDNLPGIPGVGE-------------------------KTAAKWITQFGS 333

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A    +LV                 E+  G    +F   LE  KL  R+         +
Sbjct: 334 FA----ELVE--------------RAEEVKGKAGQNFRDHLEAVKLNRRLTEMVRDVPLD 375

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
             P  L+    + K +A+  +          +     D  ++   E   + + L+     
Sbjct: 376 KAPEDLERAAYDRKQLAVLLDTLEIRNPSLRERLLAVDPGAEQEQEPVTEDVALDATLVP 435

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +   +                    LE  G+A   + T       +  +A          
Sbjct: 436 ANGKLAP-----------------WLEEHGNAVLGVATVDTWKLGAGEVAEVALAAAGGA 478

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
              F+                    +L ++       +  +    K+ H+ K    V   
Sbjct: 479 AAWFEPS------------------SLDEDDERAFADWLGDPERPKVMHDAKGLMRVFGE 520

Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           +G+++ G   D  L +Y++  GR +  + +++ ++L    +E++ +++S   +   +D +
Sbjct: 521 HGMTVAGVAMDTALGAYLVKPGRRTFALDALSLEYLG---RELVPAQESDGQLAFGADDE 577

Query: 538 VQEH-AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            Q    +  +  IL L   L  +L       +   ++ P   ++++ME  GI  D++ L+
Sbjct: 578 TQARTLMVEARTILDLGTALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADREHLE 637

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++  + +  +       +   G +FNL SPKQL ++LF +L  P   KTKTG        
Sbjct: 638 EMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSL 697

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
                  ++ +   +L  R+ +K++ST  + L   I     R+HT ++     TGRL+S 
Sbjct: 698 AWLAGQTEHELPVLMLRHREQAKLRST-VEGLIKSIAPDG-RIHTTFNQTVAATGRLSST 755

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSL 775
           +PNLQNIP++TD G+ IRR F+     + L++ADYSQIELR++AH+++   L   F +  
Sbjct: 756 DPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGE 815

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+HR VA  +F V    V  +MRR  K +++ + YG+S F L+ QL I   EA   +  Y
Sbjct: 816 DLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAGEARALMDTY 875

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           F RF G+ +Y+ +     R  GY  T+ GRR +  ++NS     
Sbjct: 876 FERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLNSDNRQR 919


>gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
 gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
          Length = 806

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 276/913 (30%), Positives = 441/913 (48%), Gaps = 121/913 (13%)

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG--F 133
           +Y DYKA R K P+    Q   +R    A GI   E++ +EADDII T   +AE+    F
Sbjct: 1   MYADYKAGRAKTPDEFREQFSYIREMLTALGIAYYELEHYEADDIIGTLDKMAERTEVPF 60

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
            VTI+S DKDL+QL    T +  + K     E+    ++++K G+ P + + L+AL GD 
Sbjct: 61  DVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEKMGLTPNQFIDLKALMGDK 120

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DN   IPG                       ++I +K   + + E+             
Sbjct: 121 SDN---IPG----------------------VTKIGEKTGLKLLHEFG------------ 143

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
                    LE +  E  +G           F     +     D D A +   +  INT 
Sbjct: 144 --------SLEGI-YEHIDG-----------FKTSKMKENLINDRDQAFLSKTLATINTA 183

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
               I ++  +     + +          S+   E    +L      ++ Q P+   SY 
Sbjct: 184 SPITIGLDDIVYNGPDVAS---------LSQFYDEMDFVQLKKGLASQMPQEPVAVISYQ 234

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           ++ N                  F+ + D  +      I  A    +Q   +         
Sbjct: 235 EVTNVSA-----DLFSAEDIFYFETLRD--NYHREAIIGFAWGHGEQIYAS--------T 279

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFED 488
           DLS+  +                 K+ F+        ++ K  K++L   GI +     D
Sbjct: 280 DLSLLAT--------------DSFKQVFQKP---IATYDFKRSKVLLSHLGIELVAPSYD 322

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIE 544
             L +Y+L S    +++++IA+ +   + +E      K  K ++P   +    + EH   
Sbjct: 323 ARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYGKGAKRAVPDKDV----LLEHLAR 377

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
              V+L     +  KL   + L +Y+ ++ P+ +V+++MEI GI++++  L+ ++ +   
Sbjct: 378 KVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKV 437

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            + +L + IYD++G++FN++SPKQLG ILF K++ P     KT    +TA D+ +     
Sbjct: 438 IIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPI 497

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            PI+  IL++RQ++K++STY   L ++I    + +HT Y    T TGRL+S++PNLQNIP
Sbjct: 498 APIVAKILDYRQITKLQSTYVIGLQDYILADGK-IHTRYVQDLTQTGRLSSVDPNLQNIP 556

Query: 725 IKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           I+ + G+ IR+AF        L+S+DYSQIELR+LAHI+    L   F    DIH   A 
Sbjct: 557 IRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAM 616

Query: 784 EIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +FG++    V+   RR+AK +NF I+YGIS F L+  L I R ++  YI  YF R+PGI
Sbjct: 617 RVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQSKSYIDTYFERYPGI 676

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+E      +  GYVET+F RR    +INS   ++R+  ER AIN+PIQGSAADI + 
Sbjct: 677 KAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKI 736

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K+L+      KMLLQ+HDE+V EVP +E+T   +++  +ME A    ++L VPL
Sbjct: 737 AMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVKDTMEAA----VDLAVPL 792

Query: 963 KVNIKVSNNWQEE 975
            V+     +W E 
Sbjct: 793 CVDESTGQSWYEA 805


>gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 931

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/974 (26%), Positives = 437/974 (44%), Gaps = 118/974 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  ++L+DGS+FI+R FYA   + R  DGLP NA+     +L KLL+  +     ++ A
Sbjct: 76  DKEPVYLIDGSAFIFRGFYAFQNMQR-SDGLPTNALFIVLRILLKLLREEQ----PAYAA 130

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D    TFR+ +Y  YKANR   PE L+ QL  +R   ++ GIP     G EADD IA
Sbjct: 131 FFMDGKGPTFRHALYDQYKANRSATPEPLVQQLDPIRRGVRSLGIPLEVSDGCEADDCIA 190

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +     + E   V I+  DKDL Q +     L+D                G   EK++ L
Sbjct: 191 SLAAKFKSE-RPVIIVGADKDLKQCIDDNVYLWDP---------------GAKQEKLLDL 234

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
              T ++     G+    +     ++   G+  + +     +  K   +   E+      
Sbjct: 235 AGFTEET-----GLSPSQWPDFQAVI---GDSSDNIPGVPGVGPKTAAQIFAEFPTLE-- 284

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                +   +  +   ++       +   L   L  L+  +  +         + + +  
Sbjct: 285 ----AIQENEKALKPGVQKKFAGQWDNIYLYRRLTTLDTGRCTSLALKDMTVQSVDADNA 340

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
              +   E + +  E           S  +++   +     +  PQ        +L    
Sbjct: 341 AAFLREFELRTLLRELPQSVPVRPARSGAAAMQQASLFGEPQAAPQIPSFSSADQLPAVS 400

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
                                                 A       IA++    +   + 
Sbjct: 401 -----------------------------------GTVALVPAEKGIAVAFNGNEYLYTG 425

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
           K E    DL+ H +Q       +  ++              K  +             I 
Sbjct: 426 KPE----DLAAHMAQTGAISRIIAPDV--------------KALYRSHTSWRA-----IE 462

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           +  + D+ L +Y+L+     +   S+A++                  ID  + + +    
Sbjct: 463 VHRWFDLGLAAYLLNPEERDYSWTSLARR-------------AEEFGIDAQTPATLALTL 509

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            +++            +L    L  + E L+ P+I V++ ME+ GI+I++       AE+
Sbjct: 510 AQDAAA----------RLEGVGLSALMEELEMPLIPVLADMELRGIRINRAEFSGFLAEV 559

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
            K L  L + +Y ++G +FN+ S +QLG++LF  L   +G+KTK GQ  T+   LE++  
Sbjct: 560 QKELDRLTQEVYAVAGGQFNIRSSQQLGELLFGTLGLKAGSKTKGGQASTSQAVLEKL-A 618

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           G +P+I  ILE+R+L K++STY + LP    +   R+HT ++  +T TGRL+S +PNLQN
Sbjct: 619 GKHPVIDTILEYRKLEKLRSTYLEPLPRLAQE-NDRIHTTFNQLATATGRLSSSQPNLQN 677

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++  +GQ++RR F + P  KL++ADYSQIELR+LAH++    L + F  + DIH   A
Sbjct: 678 IPVRGPMGQRMRRCFTAAPGNKLVAADYSQIELRVLAHVSADPTLIESFTRNEDIHSRTA 737

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
             ++ V    V+P  RR+AKTINF +IYG+ P +LA +L++  +EA ++I+RYF +   +
Sbjct: 738 GLLYDVTAADVTPDQRRNAKTINFGLIYGMGPQKLAQELKVTLNEAKEFIERYFSKLSHL 797

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            E+ +  +   R++G+V T+ GRR    EI+S  + +R+   R AIN  +QGSAADI + 
Sbjct: 798 KEFYDNVEQSAREHGFVTTLAGRRRLLPEIHSDNNQLRSQARRQAINTVVQGSAADIIKI 857

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+         +L   ++LQ+HDEL+ E P++    A++ +   M         L VPL
Sbjct: 858 AMLKAAADETLQQLNAALILQVHDELLLEAPQDAAEAAAKRLADIMSSVRPGGAALDVPL 917

Query: 963 KVNIKVSNNWQEEN 976
            V+  + +NW + +
Sbjct: 918 AVDYGIGDNWGQAH 931


>gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70]
 gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s]
 gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923]
 gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2]
 gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150]
 gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023]
          Length = 866

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 262/978 (26%), Positives = 447/978 (45%), Gaps = 122/978 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LF++D S F++RA++A P + R  +G    A+ GF   L KL+++   E    +   +
Sbjct: 2   KKLFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPE----YVVAV 56

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R E+Y DYK+NR +  E L  Q+ LV+   +  GI  +E +G EADD+IA+
Sbjct: 57  FDGPNNKQSRQELYADYKSNRDRQLEDLPEQIRLVKQYCELLGISCLEEKGVEADDVIAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            T  A  +GF V I + DKDL+QLVS    +++  KE++I    V+ ++           
Sbjct: 117 ITKKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLSQF----------- 165

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
                         G+  +  A  L   G+  + +   S    KK +  + E+       
Sbjct: 166 --------------GVPPEQIADYLALVGDSSDNIPGVSGCGPKKAQALLKEFQ------ 205

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL----EFTKLINRVATTYDCDAANI 299
                          +E L+    N  RL    K +    + T L+++   T   D A  
Sbjct: 206 --------------SVEELV---ANTERLSGKTKQMIEDQKETLLLSKRLATLHMDLA-- 246

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                                     + T +F+                +   + L K +
Sbjct: 247 ------------------------FPLTTEEFAFSLQAIDSAQLNTFYLQHGFKALVKHA 282

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   ++ +   + +   ++  +++L+  G   +            +   +A++  +Q   
Sbjct: 283 ETATSSIAVQTVTDPVTLKTVLEQLKG-GEVGYCAAYTGEHLPSLQLHGVALAGANQ--- 338

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                   +I++S                 ++ LK FF ++     G+  K D   L   
Sbjct: 339 ------VFYIEVSGVQE-------------IALLKDFFADKATQFFGYRSKRDNHALRNS 379

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIPIDKISDSQ 537
           GI +    D++L  +++ SG +     ++  +                 S+P+  +    
Sbjct: 380 GIDVHVTADLVLAEHLV-SGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDP 438

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             ++    ++ +L +   L  KL  + L  ++E +++P+  V+  ME  G+ +D   L  
Sbjct: 439 -SQYFGMFASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAV 497

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  +++K L    + IYDL G +FN+ SPKQL DIL+ +L      K K+     T  ++
Sbjct: 498 LDRDLTKELEECSQEIYDLVGCEFNIKSPKQLSDILYQRLGIEPVDKAKS-----TKAEV 552

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +     + II  IL +R   K+ STY  +LP  IN  TQR+H  ++   T+TGRL+  +
Sbjct: 553 LEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQD 612

Query: 718 PNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP++++ G+ +R AF +       ++ADYSQIELR LAH+++   L + F +  D
Sbjct: 613 PNLQNIPVRSERGRSLREAFRVKKDNDYFLAADYSQIELRFLAHLSQDETLKRAFNSGED 672

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A+++F V +E+V+ Q R  AK +NF ++YG   + L+  L+I  SEA   +  YF
Sbjct: 673 IHAFTASQVFNVPLEQVTKQQRYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYF 732

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P   E+I +T     +N  V T+ GR     +  S     R  + R A+N  IQGSA
Sbjct: 733 ARYPLAAEFITQTIEQASKNQKVTTMLGRERILSDWESS-PGARAASGRLAVNTRIQGSA 791

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           A++ + AM+++   +    L +++LLQIHDEL+FEVP EE+     ++   ME A     
Sbjct: 792 AELIKLAMLNISDEMRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAM---- 847

Query: 957 NLRVPLKVNIKVSNNWQE 974
            L VPL VN+ +  NW E
Sbjct: 848 ELSVPLVVNVLIGKNWAE 865


>gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
 gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
          Length = 848

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 263/982 (26%), Positives = 416/982 (42%), Gaps = 150/982 (15%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  E  + LVDG    +RAF+A P ++   +G   NA  GF NML + +   + +     
Sbjct: 8   MT-ERRILLVDGHGIAFRAFFALPEMT-APNGTHTNAAVGFFNMLGRAVTAHQPDR---- 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E++ DYKANRP  P     Q+P++     + GI  +E  G EADD+
Sbjct: 62  VVVAFDMKGPTFRHELFADYKANRPATPPEFSEQMPIIHQLLASAGIDVMESAGLEADDL 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I         E   + I+S+DKD++Q++ P   +    K     E +  E   ++WG PP
Sbjct: 122 IGAAACQWS-EDAQILILSSDKDILQVLGPGVTILRPAKGVSDVEIVTAESFAQEWGFPP 180

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             MV   AL GD +DN+PG+P +G KTA  LL  YG++E I                LE+
Sbjct: 181 RLMVDYLALVGDKVDNVPGVPSVGDKTAKRLLSSYGSIEGI----------------LEH 224

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A+                               P L   L       L  R  T   CD 
Sbjct: 225 ADE----------------------------QTPALRKKLGEFGAQALETRKLTKLRCDV 256

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              +         E    A+   +  +  +    F +     S+      PQ   +E + 
Sbjct: 257 DMTQFENQSAQPDEKSFNAVLDGLAINHRLARPFFPT--QAASEGQGADEPQVDDVETIV 314

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +        T I                   +  +  D   A    P          
Sbjct: 315 LYPEPAEEVPLTTLI--------------GAPRLAVDVSDDGETASVCAPGG-------- 352

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                      +    +   +  +G  +  K   S LK+ F                   
Sbjct: 353 ----------QWWSGPLAELKGESGVLSRRKVYCSDLKRLF------------------- 383

Query: 477 HRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
              G++ + G  D+    Y+L    ++H +  +A                  +P      
Sbjct: 384 ---GLTGLSGSWDLKTAHYLLHPDLTAHGLPDLA----------------DGLPFGP--- 421

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                   E +  +  L   L  K+    +  + + +D P++  + +ME  G+ +D   +
Sbjct: 422 --------ERTLRLFPLAEDLNEKIESYGMTDLMKTVDLPLLPALVRMEQAGVHLDGPAM 473

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +A++  +L  +   I   +G   NL+SPKQ+G++LF KL  P   +T    + T   
Sbjct: 474 VAFTAQLEASLDRVSGEILTYAGGPINLNSPKQVGELLFEKLGLPVIKRTAQKGYSTDVS 533

Query: 656 DLEQIN---CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            LE +        P+   +LE R+LSK+ S +A  L      R   VH+ +   +T TGR
Sbjct: 534 VLETLCRSVGDICPVPALLLEHRELSKMLSGFAVPLAAA--SRDGVVHSTFEAQTTGTGR 591

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQN+P  ++LG ++ R   + P    ++ADYSQIELR+LAH++    L ++FE
Sbjct: 592 LSSRDPNLQNLPNYSELGGQLCRCLTAGPGGVFVAADYSQIELRVLAHLSGERRLREIFE 651

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   AA I G+  + V+ + RR AKT+ F ++YG+S F LA +L + ++EA   +
Sbjct: 652 AGRDIHTETAAMILGIPADSVTKEQRRMAKTVTFGLLYGMSAFGLADRLSVGQAEARGIM 711

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             YF   PG+ EY++ T    R+ GY +T +GR    DE+ + + + R    R AIN+P+
Sbjct: 712 DAYFAALPGVREYVDATVAEARRRGYSQTAYGRIRPLDEVATGRQTDRGHARRVAINSPV 771

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADIT+ AMI+V + L    +   M+LQ+HD +V     E      + +   M  A 
Sbjct: 772 QGTAADITKMAMITVDRELAAAGVP--MVLQVHDSIVCRTTPENAEPVGKKLAEFMTGA- 828

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
              + L VPL V  K      +
Sbjct: 829 ---VKLSVPLAVETKTGKTLAD 847


>gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
 gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
          Length = 854

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 265/982 (26%), Positives = 433/982 (44%), Gaps = 143/982 (14%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K+  + LVDG +  +RAFYA P L+   DG P NAI GF NM++K + +   +      A
Sbjct: 5   KDKTVLLVDGHALAFRAFYALPELT-APDGTPTNAILGFINMMFKTIDDCHPDMT----A 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD P  TFR+EIYP+YK  R   PE    Q+PL++   +A GI  +  +G EADD+IA
Sbjct: 60  VVFDAPGATFRHEIYPEYKMGRRPTPEEYKVQVPLLQQVVRAMGIKVVVKEGVEADDVIA 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           +    A + G  V  +++DKD++Q++ P   +   +K      + +     ++WG PP  
Sbjct: 120 SAVCGAARLGVKVIALTSDKDILQVLQPGVRIIRPIKGVSTFTEYNEASFEEEWGFPPTV 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M    AL GD++DNIPG+PG+                          +K  ++ + +Y  
Sbjct: 180 MPDYLALLGDAVDNIPGVPGV-------------------------GEKTAKKLLSQY-- 212

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
                             + LE +         L   L+     K I    T +      
Sbjct: 213 ------------------VSLEDIYDH---LDELKPGLQK----KFIEAKETAFKSRELI 247

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                L +   E     +  E   +   +      L         E T +++ LE     
Sbjct: 248 RLKCDLPLTVEEFTQTEVNFESFEELCRRLGLHKILERVRKSGEYETTKEEVQLEI---- 303

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                           + ++  + ++      +F  + +       +   IA+       
Sbjct: 304 ---------------GEAVEGNLAEILHEKELAFYCLPEGFYPMKLEKARIALRAQSGS- 347

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                       ++ H +              + L ++ +  +   I  + K       +
Sbjct: 348 -------YWHGVVNAHAAP-------------ASLLEWLKTGNV--ITSDYK-MMQGFFK 384

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
               +     D  +  Y+L     SH   S A                     + I+D  
Sbjct: 385 EDAPLSDRVWDAQIAHYLLHPDAKSHGPESWAA--------------------ESIADP- 423

Query: 538 VQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
                +E +  + ++   L   +   + L  +   ++ P+I V+ +ME  GI ++++   
Sbjct: 424 -----VEIAGQLWRVKNDLSSNIAQYQGLDKLMRDVEIPLIPVLWRMETWGIGLNRESFN 478

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            + +++   ++ +E+ I +  GE+ NL+SPKQ+  +LF KL  P   +TKTG + T    
Sbjct: 479 GLDSDLEIRIVEIEDTIAEKGGERINLNSPKQVAWLLFEKLNMPPIKETKTG-YSTDVTV 537

Query: 657 LEQI---NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           LE++      +  + + ILE R+LSK++S +   L +  ++ T  +H  +   ST TGRL
Sbjct: 538 LEELVKMGLPEKEVPELILEHRELSKMRSGFVHPLVSAADENTDLIHGTFESTSTGTGRL 597

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S +PNLQN+P       +++   +        ++ADYSQ+ELR+LAH+     L + FE
Sbjct: 598 SSRDPNLQNLPAFGQWSTRLKEGLVPHKDGNIFVAADYSQVELRVLAHLCDEKRLKEAFE 657

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   A+ IF VN + V+P++RR AK +NF ++YG+S F LA++L I + EA D I
Sbjct: 658 ARRDIHTETASWIFNVNPQMVTPELRRFAKVVNFGLLYGMSSFGLASRLGIGQQEAGDII 717

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF   P + +YIEK+    R+ GY  T FGR    DE+ S     R   +R A+N PI
Sbjct: 718 NRYFRALPKVRDYIEKSYQDARKRGYAVTDFGRIRPLDEV-SVNPRDRGALKRIAVNTPI 776

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI R AMI  +K  E  +    ++LQIHD LV E   EE     + +   ME A 
Sbjct: 777 QGTAADIARMAMIKFYKHFEKRQ-NVHLVLQIHDSLVCECAAEEKEAVVKDLTDIMESAA 835

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VPLKV     ++  E
Sbjct: 836 ----TLSVPLKVEATWGHSLAE 853


>gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
 gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
          Length = 911

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 275/999 (27%), Positives = 464/999 (46%), Gaps = 119/999 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +  + +VDG+S I+RAFYAT       L +   G+  NA+  F NML  ++         
Sbjct: 2   KTKILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIHQRGPY--- 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            H  + FD    TFR+++  DYKANR K P  L+ Q  +VR       I   E +  EAD
Sbjct: 59  DHILIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEAD 118

Query: 119 DIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DI+ +    AEK+       I+S+DKD+ QL++      + V+     E+ID   + +KW
Sbjct: 119 DIVGSICKYAEKQFDDLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEIDTNKLFEKW 178

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            I P ++   +A+ GDS DN+ G+ GIG K A  L+Q+Y +L                EN
Sbjct: 179 QILPNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYESL----------------EN 222

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           I    E  + + K   L  D  +    + L +   +       L+   F KL        
Sbjct: 223 IYNNLEQLKGAIK-TKLEQDKQMAFLCKDLAIIKTDV-----VLENFSFNKL-------- 268

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D +  NI   +        K         R + I    F+S          +   + L +
Sbjct: 269 DFNVNNIYEFLNKYEMYSLK--------KRFSNILNLDFNS---------YQNNEKNLDI 311

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           + +   S+   ++ +Y  + + ++                       D    K I I IS
Sbjct: 312 KIISSWSKDYEDSINYLYVESLEE-----------------------DYHKDKIIGIGIS 348

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                          ++D      Q S  ++T      +  ++F  N++  K  ++IK  
Sbjct: 349 NNKGN---------FYLDFKNKVQQLSFFEDTTLSSTDNLFEEFLNNKNLKKYTYDIKKT 399

Query: 473 KLVLHRYGISMRG---FEDIMLMSYVLDSG---RSSHDIASIAQKWLSYTRKEILKSRKS 526
             +L  +  ++       D M+  Y L++      S+ I  + Q+    T + I      
Sbjct: 400 TYLLKNHQYNVLPSNFDFDFMVACYSLNANVVSDLSNQIKLVNQQEEIETNEIIFGKGVK 459

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
             P   I      ++  + + ++ +    L  +L       +Y ++D P+I+V+  +E+ 
Sbjct: 460 KNP--DIDIDIKSKYISKKAYLLKKYSDKLIEQLKQTNTYDLYLKIDYPLIEVLYDIEVQ 517

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPSG 642
           GI ID++ LK  + +I K +  +E  +  +  E+    FN SSPKQ+ ++LF KLK P+ 
Sbjct: 518 GILIDKEQLKLQTEQILKKINHIEWQMKIMVAEEIDNNFNFSSPKQIQELLFDKLKLPNL 577

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            K       TT++++ +     +PII  +LE R+ +K+ +TY       I    + VHT 
Sbjct: 578 EK------GTTSKEVLEKLITFHPIINLLLEHRKYTKLYTTYLKGFEKFIFDDNK-VHTI 630

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           ++   T TGRL+S  PN+QNI I+ +  +++R+ FI+   K  +S DYSQIELR+LA ++
Sbjct: 631 FNHTLTNTGRLSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMS 690

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           K + L + F  + DIH   A  IF ++  +++ + RR AK  NF I+YG++ F LA  L 
Sbjct: 691 KESNLIKAFNQNADIHLQAAKLIFNISDNQITSEQRRIAKVFNFGILYGLTDFGLANDLN 750

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +  ++A   IK Y+  FP + ++ EK        GY+ T+  RR +  E+NS   +IR  
Sbjct: 751 MNVNQAKQMIKDYYSAFPSLLDFKEKQVEIATNQGYITTLSNRRRYISELNSTNHNIRQF 810

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            +R A+N PIQG+A+DI + AMIS++K +++  L  K++ QIHDE++ EV   ++    +
Sbjct: 811 GKRIAVNTPIQGTASDILKVAMISIYKKIKEQNLDAKIVCQIHDEIILEVDNNQLEQTKK 870

Query: 943 IIVHSMEKACLPKI-NLR------VPLKVNIKVSNNWQE 974
           I+++ ++ A      +L       V LKV   V   W +
Sbjct: 871 IVINELQNALEKLFLDLNIKDQVVVKLKVGESVGKTWFD 909


>gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 542

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 218/542 (40%), Positives = 329/542 (60%), Gaps = 10/542 (1%)

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLD 497
              +      +L+ LK + EN   LK+  +IKYD+ V   +GI ++G+  D ML SYVL+
Sbjct: 7   GAPEQLDRDVVLAKLKPWLENPQALKLVQHIKYDRHVFANHGIEVQGYAHDTMLQSYVLE 66

Query: 498 SGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           + +  H +AS+A++ L     + +++     + I  D++  ++  E+A E+S+  L + L
Sbjct: 67  ADK-PHGLASLAERHLGRSGISFEDLCGKGANQISFDQVDIAKAAEYACEDSDQTLDVHL 125

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           +L P++     L     L+    + + ++E  G+ ID   L   S E+ + +L LE   Y
Sbjct: 126 VLWPQIEANDKLKFIYELEIASSEALYRIERNGVLIDAPTLAAQSHELGQRILQLETEAY 185

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           +++G+ FNLSSPKQLG+I F KL  P   KT TG   T  + LE++   D P+   +LE 
Sbjct: 186 EIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKL-AEDYPLPAKLLEH 244

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           R L+K+K TY D L      RT RVHT Y+ A  +TGRL+S +PNLQNIPI+T  G+++R
Sbjct: 245 RSLAKLKGTYTDKLAQLALPRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTAEGRRVR 304

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
            AF++ P   + SADYSQIELRI+AHI+    L + F + LD+HR  AAE+FGV +++VS
Sbjct: 305 EAFVAAPGCVIASADYSQIELRIMAHISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVS 364

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            + RR+AK INF +IYG+S F LA  L I  + A +YI+RYF R+PG+  Y+E T+   +
Sbjct: 365 SEQRRYAKVINFGLIYGMSAFGLARNLGIDNTAAKNYIQRYFERYPGVKAYMESTRELAK 424

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           + GYVET+FGRR+    I + K +     ERAAINAP+QG+AAD+ + +M+ V + L+  
Sbjct: 425 RQGYVETVFGRRLQLAGIKNAKGAQLAGLERAAINAPMQGTAADLIKLSMVKVQQVLDAQ 484

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +TKM++Q+HDELVFEVP++E+      I   M         L+VPL   + V  NW +
Sbjct: 485 NKSTKMIMQVHDELVFEVPQDEVDWVRTEIPSLMAGVA----ELKVPLLAEVGVGPNWDK 540

Query: 975 EN 976
            +
Sbjct: 541 AH 542


>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
 gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 265/979 (27%), Positives = 451/979 (46%), Gaps = 117/979 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           ++  ++L+DGS+F+YR FYA   + R  DG P +A+     +L ++L+  + +    HFA
Sbjct: 8   EQEPIYLMDGSAFVYRGFYANQSMQR-SDGFPTSALFIVARILMRILREEQPK----HFA 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            + D     FR+E++P YKA R   PE L+ Q+  +    +A G+        EADD +A
Sbjct: 63  FVLDGHGPNFRHELFPLYKAQRSATPEDLIKQIDPIHRLIKALGLHLEVSDSCEADDCLA 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT--VKEEKIDIEHVIKKWGIPPEKMV 180
           +      +E   V +++TDKDL Q +     ++D     E+ + ++   ++ G+ P +  
Sbjct: 123 SLAKRYREE-RPVILVATDKDLKQCLHDNVMMWDPASRDEKIVTLKSFEEETGLKPTQWP 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QA+                          G+  + +     +  K   +   EYA   
Sbjct: 182 DVQAII-------------------------GDSSDNIPGVRGVGPKTAEKLFHEYA--- 213

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINRVATTYDCDAANI 299
                             LE +        P L            + R  TT D      
Sbjct: 214 -----------------SLEAIRDGFASMKPALQKKFDGQLEAMFLYRQLTTLDT----- 251

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                      ++  ++  +  R   +   + ++L  +    + E+      L  L +  
Sbjct: 252 -----------SRCASLTLDAMRVRPVNRQEAATLLREFELSSLERE-----LATLIRDG 295

Query: 360 QYPINNDSYTKIVNTKDIQ-QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +  + +D+   + + K    + +  L+T  +   + + D  D F        ++ L    
Sbjct: 296 RVAVEHDASETVDSGKSGSMRQLSLLDTPKAEPRQRLRDASDPFFDALEGNPVAVLGGHG 355

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
           + +  V            ++        K +   LK  F       I  ++K        
Sbjct: 356 ELAIAV----------GDKEIVYTGLTPKLVDRLLKAKF------VIAPDVKALLHTHAD 399

Query: 479 YG-ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           +G I    + D+ L SY+L+     +    ++ +W             +++ +       
Sbjct: 400 WGRIPPEKWFDLGLASYLLEPEDRDYGWPKLSARW------------GTALGLS------ 441

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
               A     + L +   L  +L    L+ + + L+ P+I V++ ME  G+++D + L  
Sbjct: 442 ----AANPGLLALTMTDQLLKRLSGAHLVELMKTLELPLIPVLADMESAGVKLDAEALAD 497

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              E+ K+L  + E++Y  +   FN+ S +QLGD+LF +LK P   KT+ GQ  T+   L
Sbjct: 498 FLEEVQKDLDRITEDVYREAQGPFNIRSAQQLGDVLFNRLKLPVSGKTRGGQASTSQDVL 557

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E+++ G +P++  +LE+R+L K++STY + LP  +     R+ T ++  +T TGRL+S  
Sbjct: 558 EKLS-GHHPVVDALLEFRKLEKLRSTYLEPLPRLMGGDG-RIRTTFNQLATATGRLSSSN 615

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIP++  LG+++R  F +P  KKLISADYSQIELR+LAH+++   L   F    DI
Sbjct: 616 PNLQNIPVRGALGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADI 675

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+ +F     +++P  RR+AKTINF +IYG+ P +LA +L+IP SEA  ++ RYF 
Sbjct: 676 HARTASLLFDAPPSEITPDQRRNAKTINFGLIYGMGPQKLAQELKIPLSEAKAFMARYFE 735

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R  G+  + E  +   R+ GYV T+ GRR    +I +     R++  R AIN  IQGSAA
Sbjct: 736 RLQGLKHFYENVEEMAREQGYVTTLAGRRRPLPDIQAESQQARSLARRQAINTLIQGSAA 795

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AM++VH       L  K+LLQ+HDEL+ EVPE     A + +   M       I 
Sbjct: 796 DIIKLAMLAVHGDETLRTLDAKLLLQVHDELLLEVPEAAAQEAGERVAALMANVRPGGIV 855

Query: 958 LRVPLKVNIKVSNNWQEEN 976
           L VPLK +   + NW + +
Sbjct: 856 LDVPLKADWGAAENWGDAH 874


>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
 gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
          Length = 893

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 214/622 (34%), Positives = 349/622 (56%), Gaps = 18/622 (2%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           ++       Y   +   D+++    + + G  +    T   D   +  + ++    + K 
Sbjct: 286 AREETVETEYRLCLTLADVKKLADDMRSAGLLAIDTETTGTDPMRADLVGVSFCLKEGK- 344

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                    ++ +  H             +    LK   E++  LK+G NIKYD  VL R
Sbjct: 345 -------AFYLPVGHHYL--GVPAQVSWPDARDVLKDVLEDDAVLKVGQNIKYDACVLKR 395

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
           +G+S+ G   D M+ SYV++ G   H++ ++AQ++L++     K+++   K++   +++S
Sbjct: 396 HGVSLSGISFDTMIASYVINPGLRQHNLDALAQRYLNHKMISYKDVVGKGKNARGFEEVS 455

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             +  E++ E++++  +L  +L  ++  EK   ++  L+  ++ V+  ME+TGI+ID  L
Sbjct: 456 LEKACEYSCEDADMTFRLRRILAKQIRDEKNEALFNELEMKLLPVLLDMEMTGIKIDTAL 515

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
            + +SA+ ++ +  +E+ I   +G +FNL+SP+QLG +LF  LK P G KT   +  +T 
Sbjct: 516 FETMSADFAEEMKQVEKKIQADAGMEFNLNSPQQLGKVLFEVLKLPGGRKTAKTKRYSTD 575

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             + Q     + I + IL +R L+K+KSTY D+L   +N  T+RVHT ++     TGRL+
Sbjct: 576 VKVLQKLAESHRIAREILRFRSLAKLKSTYLDALVRMVNPETKRVHTSFNQTVAATGRLS 635

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S +PNLQNIPI+ D G+ IR+ F++   K L++ADYSQIELR+ AH ++       F+ +
Sbjct: 636 SSDPNLQNIPIRGDAGKNIRKGFMAGSGKILVAADYSQIELRVFAHYSQDAAFMAAFKEN 695

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH   A E+ G    +V+P+MRR AK INF IIYG+ P +L+ +L I +  A DYI  
Sbjct: 696 QDIHARTALEVLGKEKGEVTPEMRRIAKAINFGIIYGMGPQKLSEELSISKEAAQDYINA 755

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y+ R+ G+  + EK      + GYV T+F RR +  +I+   + IR+  ER A+N PIQG
Sbjct: 756 YYDRYKGVKRFKEKAIETALEKGYVTTLFNRRRYLPDISHNNNRIRSEAERMAVNTPIQG 815

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AAD+ ++AMI +H  L +    +KMLLQ+HDEL+ EVPEEE      +I   ME     
Sbjct: 816 TAADLIKKAMIEIHNRLTEAAFQSKMLLQVHDELLLEVPEEEADDLINMIREEMEGV--- 872

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
              LRVPLKV+I    NW E +
Sbjct: 873 -YPLRVPLKVDIGKGLNWDEAH 893



 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 117/295 (39%), Positives = 179/295 (60%), Gaps = 6/295 (2%)

Query: 1   MQKE-NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M+ E N ++L+DGSS+I+RA++A   L     G P NAI GF  M+ KLL   +     +
Sbjct: 1   MENERNTIYLLDGSSYIHRAYHAIRNLQNAK-GFPTNAIFGFTQMVLKLLSEKK----PA 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           + AV+FD    TFR+++Y +YKANRP +P  +  QLP +R   +  GI  +E  G+EADD
Sbjct: 56  YLAVVFDAKGPTFRHDLYEEYKANRPPMPHDMAAQLPFIRKVVKNLGIAMLEKSGYEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           II T     E+EGF V ++S DKD  QL+ P   ++DT+K++  D + +   +G  PEK 
Sbjct: 116 IIGTLARAGEEEGFNVVVVSGDKDFRQLIRPRVSMWDTMKDKITDYDSLKSAYGFEPEKF 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L+GD+ DNIPG+ G+G KTA  L++E+G+L+ +  N   IK+KK +EN+ +  + 
Sbjct: 176 IDVMGLSGDTSDNIPGVRGVGEKTAVSLVREFGSLDGVFENLDEIKKKKLKENLNDCRKL 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           ARLSRKLV +   VPI+  L ++ + + +   L    + LEF  L +R A   + 
Sbjct: 236 ARLSRKLVTIECFVPISTDLNNIKVNEPSRDELADIFRELEFRDLWDRFAAREET 290


>gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
 gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
          Length = 878

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 269/977 (27%), Positives = 430/977 (44%), Gaps = 111/977 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +++ +FLVDG++F YR ++A   LSR  DG P +A+     M+++LL    KE   SH  
Sbjct: 10  EQSPVFLVDGTAFFYRGYHAFGDLSR-SDGFPTSALF----MIFRLLFKLLKEQEPSHLV 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D     FR++IY +YKANR  +PE L  Q+  +R   +  G+P I  +  EADD IA
Sbjct: 65  FFLDGRGPNFRSKIYSNYKANRDAMPEPLARQVEPLRQGLRLLGVPVIVPEDAEADDGIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDIEHVIKKWGIPPEKMV 180
           T           V I+  DKDL Q +     LYD     E+         + GI P    
Sbjct: 125 TLAARFRDI-RPVVIVGADKDLKQCLDDRVVLYDPSGKAEKLTTKAAFTAECGIEPASWP 183

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            LQAL GD+ DNIPG+PG+G KTA  +L+    LE +            R+N+       
Sbjct: 184 DLQALVGDTSDNIPGVPGVGPKTALAILRTLPTLEAV------------RDNLDA----- 226

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
                       VP++              ++  FL+A+   + + R+ T    D A  +
Sbjct: 227 ------------VPVSA-----------RKKIEPFLEAVFTYRALTRLRTDILPDTALAD 263

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            ++   +T   +      E+   T  + +             +          +L     
Sbjct: 264 ALLAKPDTAGLRAFLESYELR--TLAREAAVLPTDPAGKAAQAAAPKAAGAATQLSLFGN 321

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                                      G+A   +    +          A++ +      
Sbjct: 322 DRPCPPPVE-----------------PGAARDFVPATGL----PDLSGRAVALVPVAGGF 360

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLHRY 479
           +  +           ++ +    T ++  +  +K     +  F                 
Sbjct: 361 TLSLGPAECATDAAPAELAPLLATASRVAVPSVKALLALDPAFEA--------------- 405

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
            + +  + D+ L +Y+L+  + ++    +                         +     
Sbjct: 406 -LPLPTWFDLGLAAYLLNPEQRNYGFERL-----------------RDSLFADPAVDASD 447

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
               + +    +L  LL  +L    L  +  RL+ P++ V+  ME  GI ID   L    
Sbjct: 448 LSPADTAKAAARLADLLASRLEAAGLSDLVARLELPLVPVLLSMERIGIGIDTAALAAFG 507

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           AE++  L  LE  I +L+GE FN  S +QLG++L+ ++      KT  G   T+ + LE+
Sbjct: 508 AEVATELARLEGAIRELAGEGFNPRSSRQLGEVLYGRMGLKPRGKTPGGAASTSQEALER 567

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +  G+NP++  ILE+R+L K++STY D LP   +    R+HT ++  +T TGRL+S  PN
Sbjct: 568 L-AGENPLVDRILEFRKLEKLRSTYLDPLPRLADAAG-RIHTTFNNLATATGRLSSSNPN 625

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQNIPI+  LG+++R  F++   KKL++ADYSQIELR+LAH++    L   FE   DIH 
Sbjct: 626 LQNIPIRGTLGRRMRECFVAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHA 685

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             AA +F      + P  RR AKTINF ++YG+ P +L+  L I    A  +I++YF R 
Sbjct: 686 RTAAILFDKAEADIRPDERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIEKYFERL 745

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+  + +   +  +  G+V T+ GRR    EI+S  S + +   R AIN  +QG AADI
Sbjct: 746 SGLSTFYQGIVDTAKAQGFVTTLAGRRRLLPEIHSANSQLASQARRQAINTVVQGGAADI 805

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            + AM++ H   E   L   M+LQ+HDEL+ E PE     A + +   M       + L 
Sbjct: 806 IKMAMLAAHNDPELAGLGAAMVLQVHDELLLETPEAAAQAAGERLSALM----CGVVALA 861

Query: 960 VPLKVNIKVSNNWQEEN 976
           VPL V+      W + +
Sbjct: 862 VPLAVDWGAGQTWGQAH 878


>gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029]
 gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138]
 gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029]
 gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138]
          Length = 870

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 273/982 (27%), Positives = 444/982 (45%), Gaps = 126/982 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LF++D S FI+RA++A P + + H G    A+ GF   L KL++    E    +   +
Sbjct: 2   KKLFVLDASGFIFRAYFALPEM-KNHQGQATQAVFGFIRSLNKLIKEFSPE----YMISV 56

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R  IY DYK+NR K  E + PQ+ LV+      G+  +E +  EADD+IA+
Sbjct: 57  FDGPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCL 182
               A +E + V + + DKDL+QLV+     ++   ++  + I  VI+++GIPP      
Sbjct: 117 IAKKAREENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISEVIERYGIPPG----- 171

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
                    NIP             L   G+  + +        KK    + ++      
Sbjct: 172 ---------NIP-----------DYLALVGDSSDNIPGLPGCGPKKAAALLKQFG----- 206

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                        +   L+ L+  K +++   +   +   +   
Sbjct: 207 ----------------------------SVEGLLENLDAVKGLSQTMLSERQETLKLSKR 238

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           +  +++     + IE+       +   +      Q        + Q    E      Q  
Sbjct: 239 LALLDSNIPIPVPIESLTFPQHPVDEEKLIHFYIQQGFKTLVPSKQT---EAATVDVQII 295

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + +S T I+N          L   G  +F +          K   +A++        + 
Sbjct: 296 KDAESLTNILN----------LVQGGDIAFAVAYTGNHLLSLKLEGLALTQGSGVFFIAL 345

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                                    +IL  LK FF  E     G+N+K D   L   GI 
Sbjct: 346 --------------------EEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNAGIV 385

Query: 483 MRGFE-DIMLMSYVLDSGRS--------SHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +R    D+ L  ++ + G          +H     A ++             S +PI ++
Sbjct: 386 IREISYDLALAEHLTNGGGKISFQSLLVNHGFTETAHRFAKEW-------GNSGLPIGRL 438

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              Q +++  E    +  +   +  ++  + L H+   ++ P+  V+  ME  G+ +D +
Sbjct: 439 P-EQPEQYFGEFVAYLPIIKDAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVE 497

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L  + A     L  L E IYDLSG  FN+ SPKQL DIL+ +L      K K+     T
Sbjct: 498 ELAILEALFETELAVLTEEIYDLSGRPFNIKSPKQLSDILYNELGLRPIDKAKS-----T 552

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             ++ +    ++PII+ +L +R + K+ STY  +LP  ++  TQR+H  +     +TGRL
Sbjct: 553 RAEVLEALRSEHPIIEKLLAFRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGAVTGRL 612

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           A  +PNLQNIPI+++ G  +R+AF +S      +SADYSQIELR LAH+++   L   FE
Sbjct: 613 ACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQDKSLKFAFE 672

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   A+++F V +E+VS + R  AKT+NF I+YG   F LA  L+I   EA + I
Sbjct: 673 SGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAFGLAKVLKISIGEAQELI 732

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF R+P I  ++E+T     ++  V T+ GR    D  N      R  + R A+N  I
Sbjct: 733 QAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDSWNEF-PGSRAASGRFAVNTRI 791

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA++ + AM+ + ++++  ++ ++MLLQIHDEL+FEVPEEEI    +++   ME A 
Sbjct: 792 QGSAAELIKLAMLDISQAIKQQQMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAM 851

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VP+ VNI +  NW E
Sbjct: 852 ----TLSVPIVVNILIGKNWAE 869


>gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183]
 gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183]
          Length = 870

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 273/982 (27%), Positives = 444/982 (45%), Gaps = 126/982 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LF++D S FI+RA++A P + + H G    A+ GF   L KL++    E    +   +
Sbjct: 2   KKLFVLDASGFIFRAYFALPEM-KNHQGQATQAVFGFIRSLNKLIKEFSPE----YMISV 56

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R  IY DYK+NR K  E + PQ+ LV+      G+  +E +  EADD+IA+
Sbjct: 57  FDGPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCL 182
               A +E + V + + DKDL+QLV+     ++   ++  + I  VI+++GIPP      
Sbjct: 117 IAKKAREENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISEVIERYGIPPG----- 171

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
                    NIP             L   G+  + +        KK    + ++      
Sbjct: 172 ---------NIP-----------DYLALVGDSSDNIPGLPGCGPKKAAALLKQFG----- 206

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                        +   L+ L+  K +++   +   +   +   
Sbjct: 207 ----------------------------SVEGLLENLDAVKGLSQTMLSERQETLKLSKR 238

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           +  +++     + IE+       +   +      Q        + Q    E      Q  
Sbjct: 239 LALLDSNIPIPVPIESLTFPQHPVDEEKLIHFYIQQGFKTLVPSKQT---EAATVDVQII 295

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + +S T I+N          L   G  +F +          K   +A++        + 
Sbjct: 296 KDAESLTNILN----------LVQGGDIAFAVAYTGNHLLSLKLEGLALTQGSGVFFIAL 345

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                                    +IL  LK FF  E     G+N+K D   L   GI 
Sbjct: 346 --------------------EEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNAGIV 385

Query: 483 MRGFE-DIMLMSYVLDSGRS--------SHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +R    D+ L  ++ + G          +H     A ++             S +PI ++
Sbjct: 386 IREISYDLALAEHLTNGGGKISFQSLLVNHGFTETAHRFAKEW-------GNSGLPIGRL 438

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              Q +++  E    +  +   +  ++  + L H+   ++ P+  V+  ME  G+ +D +
Sbjct: 439 P-EQPEQYFGEFVAYLPIIKDAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVE 497

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L  + A     L  L E IYDLSG  FN+ SPKQL DIL+ +L      K K+     T
Sbjct: 498 ELAILEALFETELAVLTEEIYDLSGGPFNIKSPKQLSDILYNELGLRPIDKAKS-----T 552

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             ++ +    ++PII+ +L +R + K+ STY  +LP  ++  TQR+H  +     +TGRL
Sbjct: 553 RAEVLEALRSEHPIIEKLLAFRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGAVTGRL 612

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           A  +PNLQNIPI+++ G  +R+AF +S      +SADYSQIELR LAH+++   L   FE
Sbjct: 613 ACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQDKSLKFAFE 672

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   A+++F V +E+VS + R  AKT+NF I+YG   F LA  L+I   EA + I
Sbjct: 673 SGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAFGLAKVLKISIGEAQELI 732

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF R+P I  ++E+T     ++  V T+ GR    D  N      R  + R A+N  I
Sbjct: 733 QAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDSWNEF-PGSRAASGRFAVNTRI 791

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA++ + AM+ + ++++  ++ ++MLLQIHDEL+FEVPEEEI    +++   ME A 
Sbjct: 792 QGSAAELIKLAMLDISQAIKQQQMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAM 851

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VP+ VNI +  NW E
Sbjct: 852 ----TLSVPIVVNILIGKNWAE 869


>gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN]
          Length = 870

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 273/982 (27%), Positives = 443/982 (45%), Gaps = 126/982 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LF++D S FI+RA++A P + + H G    A+ GF   L KL++    E    +   +
Sbjct: 2   KKLFVLDASGFIFRAYFALPEM-KNHQGQATQAVFGFIRSLNKLIKEFSPE----YMISV 56

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R  IY DYK+NR K  E + PQ+ LV+      G+  +E +  EADD+IA+
Sbjct: 57  FDGPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCL 182
               A +E + V + + DKDL+QLV+     ++   ++  + I  VI+++GIPP      
Sbjct: 117 IAKKAREENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISEVIERYGIPPG----- 171

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
                    NIP             L   G+  + +        KK    + ++      
Sbjct: 172 ---------NIP-----------DYLALVGDSSDNIPGVPGCGPKKAAALLKQFG----- 206

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                        +   L+ L+  K +++   +   +   +   
Sbjct: 207 ----------------------------SVEGLLENLDAVKGLSQTMLSERQETLKLSKR 238

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           +  +++     + IE+       +   +      Q        + Q    E      Q  
Sbjct: 239 LALLDSNIPIPVPIESLTFPQHPVDEEKLIHFYIQQGFKTLVPSKQT---EAATVDVQII 295

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            + +S T I+N          L   G  +F            K   +A++        + 
Sbjct: 296 KDAESLTNILN----------LVQGGDIAFAAAYTGNHLLSLKLEGLALTQGSGVFFIAL 345

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                                    +IL  LK FF  E     G+N+K D   L   GI 
Sbjct: 346 --------------------EEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNAGIV 385

Query: 483 MRGFE-DIMLMSYVLDSGRS--------SHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +R    D+ L  ++ + G          +H     A ++               +PI ++
Sbjct: 386 IREISYDLALAEHLTNGGGKISFQSLLVNHGFTETAHRFAKEW-------GNLGLPIGRL 438

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              Q +++  E    +  +   +  ++  + L H+   ++ P+  V+  ME  G+ +D +
Sbjct: 439 P-EQPEQYFGELVAYLPIIKDAILEEINRKNLNHILSDIEMPLEKVLVSMERAGVPLDVE 497

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L  + A     L  L E IYDLSG  FN+ SPKQL DIL+ +L      K K+     T
Sbjct: 498 ELAILEALFETELAVLTEEIYDLSGRPFNIKSPKQLSDILYNELGLRPIDKAKS-----T 552

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             ++ +    ++PII+ +L +R + K+ STY  +LP  ++  TQR+H  +    T+TGRL
Sbjct: 553 RAEVLEALRSEHPIIEKLLAFRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGTVTGRL 612

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           A  +PNLQNIPI+++ G  +R+AF +S      +SADYSQIELR LAH+++   L   FE
Sbjct: 613 ACRDPNLQNIPIRSERGILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQDKSLKFAFE 672

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +  DIH   A+++F V +E+VS + R  AKT+NF I+YG   F LA  L+I   EA + I
Sbjct: 673 SGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAFGLAKVLKISVGEAQELI 732

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF R+P I  ++E+T     ++  V T+ GR    D  N      R  + R A+N  I
Sbjct: 733 QAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDSWNEF-PGSRAASGRFAVNTRI 791

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAA++ + AM+ + ++++  ++ ++MLLQIHDEL+FEVPEEEI    +++   ME A 
Sbjct: 792 QGSAAELIKLAMLDISQAIKQQQMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAM 851

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L VP+ VNI +  NW E
Sbjct: 852 ----TLSVPIAVNILIGKNWAE 869


>gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 661

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 203/719 (28%), Positives = 355/719 (49%), Gaps = 71/719 (9%)

Query: 6   HLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            LFL+D  + I+R++YA     +    GL  +AI GFCN L ++++        +H  V 
Sbjct: 3   KLFLLDAYAIIFRSYYAFIKRPTINSKGLNTSAILGFCNTLNEIIEKEN----PTHIGVA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FDY   TFR+E +P YKA R   PE +   +P ++   +A  IP +++ GFEADD+I T 
Sbjct: 59  FDY-GKTFRHEAFPPYKAQREATPEDIKLSVPHIQDILKAMHIPILQVNGFEADDVIGTL 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGI-PPEKMV 180
              A ++G    +++ DKD  QL+     ++        D    + +  K+GI    +++
Sbjct: 118 ATQAAEKGIETYMLTPDKDYGQLIRQHVYMFRPRHGGGYDKIGEKEIQAKYGIASAAQVI 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GDS DN PG PG+G KTA  L+ E+G  EN++ N+ ++K  K RE +    +  
Sbjct: 178 DLLALMGDSSDNYPGCPGVGEKTAVKLIHEFGTCENLIENSDQLKG-KMREKVENAVDDI 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
           ++S+ L  +RTDVPI + L+ L +   +   L      LEF +L  +     +       
Sbjct: 237 KMSKFLATIRTDVPIELNLDELKMTSPDEAELHKIFTELEFRRLAKKFLNKGE------- 289

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
                                   T    Q +   +  +K  SE  P+    E L+  S 
Sbjct: 290 ---------------------EKITSDNLQLNLFEENPTKTTSE--PKFSTFESLKTTSH 326

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                  Y  I N ++ ++    L T    S    T +     ++ + ++ S  +++   
Sbjct: 327 ------HYKLIDNQEEARKLCDFLRTNKILSLDTETTSTSPMEAELVGLSFSVKEKE--- 377

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                  ++ +     +          + ++  K  +E+   LK+G NIKYD +VL  YG
Sbjct: 378 -----AFYVAIPKDREE--------ALQYVNIFKPLYEDPEILKVGQNIKYDYVVLRNYG 424

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPIDKISD 535
           + ++G   D ML  Y++      H++  +A+  L Y     +E++    K    +  +S 
Sbjct: 425 VDIQGKMFDTMLAHYLIQP-ELRHNMDYMAETLLHYQTMHIEELIGPKGKGQKNMRDLSP 483

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            ++ E+A E++++ L+L  +L P+L       ++  ++ P++ V++ ME+ G+ +D + L
Sbjct: 484 EEIYEYAAEDADITLRLKNVLEPQLKEVGAKSLFWDIEMPLVKVLADMELNGVLLDTESL 543

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTA 654
            ++    ++ +   E + ++L+GE+FN+SSPKQ+G+ILF K+K      KTKTGQ+ T+ 
Sbjct: 544 NEIERTFTERMQQYERHAFELAGEEFNISSPKQVGEILFGKMKIVDKPKKTKTGQFVTSE 603

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + L Q+     PI+++IL +R + K+  TY ++LP  IN RT  +HT ++ A T TGRL
Sbjct: 604 EVLLQLK-DKAPIVEDILNYRGMKKLLGTYVEALPKLINPRTGHIHTSFNQAVTATGRL 661


>gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12]
 gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12]
          Length = 903

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 268/986 (27%), Positives = 448/986 (45%), Gaps = 106/986 (10%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNVKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADDI
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +  ++  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLVKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LENI  N   +K     K  + ++   
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLENIYENLDLVKNLLSPKMYQALIHDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L+                 N   ++   LK   F   +  +        
Sbjct: 239 ASAFLSKELATLQRGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD     +   A++              S+L +  +  N+    + + LE  +
Sbjct: 293 -SPTPLILDNAPALDNASALDN------------ASALDNAPASDNAPTKSRMIVLESAE 339

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            LS                    +++KL+   +  F  +   +D    K +A+A    DQ
Sbjct: 340 PLSM-------------------FLEKLKNPNARVFMRLV--LDK-EKKVLALAFLLQDQ 377

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   +++  +     +I               +GH++K     L
Sbjct: 378 GYFLPLE-EALFSPFSLEFLENAFSQMLQHAQI---------------VGHDLKPLLSFL 421

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y + +      D  +++++ +  +       + +++L          ++  IP +KI
Sbjct: 422 KAKYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLREYL----------KEELIPHEKI 469

Query: 534 SDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            D +++   +E      N + +L        + E LL +   ++ P + V+  ME  G +
Sbjct: 470 KDFKIKAEKLELLSVELNALKRLCEYFEKGGLEENLLALAREIETPFVKVLMGMEFQGFK 529

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID    K++  E    L  LE  I DL G  FNL+SPKQLG+IL+ KL  P         
Sbjct: 530 IDAPYFKRLEQEFKNELNILECQILDLIGVDFNLNSPKQLGEILYEKLGLPKNKS----- 584

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T 
Sbjct: 585 -HSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTA 642

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L 
Sbjct: 643 TGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 702

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH   +  +FG ++   + + R  AK+INF ++YG+   +L+  L IP SEA
Sbjct: 703 EAFLKGRDIHLETSKALFGGDL---AKEKRSIAKSINFGLVYGMGSKKLSETLNIPLSEA 759

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFP I +Y+ + K  + +     T+ GR   +D  N     I+    R  +
Sbjct: 760 KSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FNGVNDYIKGNYLREGV 818

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NA  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +
Sbjct: 819 NAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL 877

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
                    LRVPL+ +  V+N W E
Sbjct: 878 ---NDEVYPLRVPLETSAFVANRWNE 900


>gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24]
          Length = 905

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/988 (26%), Positives = 445/988 (45%), Gaps = 108/988 (10%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKTKPLTNDKGFPTGLLTGLVGMVKKFYKDKKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +EI GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IATLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  GI GIG K A  LLQ+ G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGIKGIGNKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L             +    N   ++   LK   F   +  +  +     
Sbjct: 239 ESAFLSKELATLERGCIKEFDFSSCVFPSENPLLKIKDELKEYGFISTLRDLENSPTPLI 298

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P++ +                      T   + + D T  ++S  TP+K  +  L+
Sbjct: 299 VENAPILDN--------------------APTLDSTPILDNTPTLDS--TPKKSRMIVLE 336

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT  +  ++++L+   +  F  +   +D    K +A+A    DQ
Sbjct: 337 ----------------NTAPLSAFLEELKNPNARVFMRLV--LDK-EKKVLALAFLLQDQ 377

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   +++               +  ++     IGH++K     L
Sbjct: 378 GYFLPLE-EALFSPFSLEFLENA-------------FSQILQHAQI--IGHDLKPLLSFL 421

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y + +      D  +++++ +  +       + +++L          ++  IP +KI
Sbjct: 422 KAKYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL----------KEDLIPHEKI 469

Query: 534 SDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            D + +  A +        N + +L        + E LL +   ++ P + V+  ME  G
Sbjct: 470 KDFKTKSKAEKSEQLNMELNALKRLCEHFEKGGLEEDLLILARDIETPFMKVLMGMEFQG 529

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            +ID    K++  E    L  LE  I DL G  FNL+SPKQLG++L+ KL  P       
Sbjct: 530 FKIDAPYFKRLEQEFKNELNVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKS--- 586

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    
Sbjct: 587 ---HSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTG 642

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   
Sbjct: 643 TATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKD 702

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    DIH   +  +FG   E+++ + R  AK+INF ++YG+   +L+  L IP +
Sbjct: 703 LMEAFLKGRDIHLETSKALFG---EELAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLN 759

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI+ YF RFP I +Y+   +  + +     T+ GR   +D  N     I+    R 
Sbjct: 760 EAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFD-FNGVNDYIKGNYLRE 818

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            +NA  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I  
Sbjct: 819 GVNAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQR 877

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +         LRVPL+ +  ++  W E
Sbjct: 878 IL---NDEVYPLRVPLETSAFIAKRWNE 902


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score =  568 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 260/974 (26%), Positives = 431/974 (44%), Gaps = 103/974 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D   F +R +YA   L +  DG P   I+GF N +  L    + E  + +    
Sbjct: 2   KTLTIIDTFGFFFRLYYAMSGL-KNRDGKPSGMISGFANFIASL----KDEYQSDYLIFA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    T R+EI  +YKANR + P  L  QLP+     +  G+ ++  +G+EADDIIA+ 
Sbjct: 57  LDSKGKTLRHEILGEYKANRSEPPAQLKEQLPVCIDMIEKMGLYSLSREGYEADDIIAST 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             I + +   V I++ DKDL QL+      +Y    +   D     +K+           
Sbjct: 117 VKICKDKDIFVRIVTHDKDLYQLIEDGKVSIYSPQSKIDHDSASCFEKY----------- 165

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
                         G+        L   G+  + +     I     ++ + EY       
Sbjct: 166 --------------GVYPAQVRDFLAIAGDSSDNIPGVKGIGAVGAKKLLAEYG------ 205

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
                                       L    + L    LI    T     AA  E  +
Sbjct: 206 ---------------------------SLEGIYENL---ALIRNERTKNMLAAARDEAFL 235

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                T         +++     + +   ++S+   + +  +  + L  E   +      
Sbjct: 236 SKKLATLFDDAITSLDLEHSKFPEQNPLINISEILQEYDLNRLLKSLQKEENAEFKLGFR 295

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            N     +++   +++ +  +      +F   T  +D+  +K +  + S     D+ ++ 
Sbjct: 296 AN----LLLDETSVEKLLADITPETIVAFDTETTGVDSKSAKIVGFSFSF---NDEDAYY 348

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGIS 482
           V      L      D         +I               IG N+KYD  +V +  G++
Sbjct: 349 VPVAHNYLGAPKQIDLKFATWAVGQI----------YKGCVIGQNLKYDFEIVKNNLGLN 398

Query: 483 M-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
               F+D M+++++ D   SS  + ++A++   Y   +     K       +      ++
Sbjct: 399 PPANFKDTMILAWLSDPN-SSVGMDALAKRLYDYDTIKFEDVVKKGQTFGDVPLENAAKY 457

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E++ + L+ +   +  L    LL + +  + P I  +  ME  GI+I++  ++++  E
Sbjct: 458 AAEDAWITLKFYKTFQNTLD-PNLLALADMHEFPFILTLFDMEQNGIKINEAKMQKLILE 516

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               L +L   IY+LSGE FN++S KQLG ILF  LK P+  KTKTG   +T + +    
Sbjct: 517 NDTKLKALTSEIYELSGENFNINSVKQLGVILFEHLKLPTKKKTKTGY--STDESVLAEL 574

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR-TQRVHTFYSLASTMTGRLASLEPNL 720
              +P++  IL +R+L K++STY + L     K    R++T +    T TGRL+S  PNL
Sbjct: 575 IDAHPVVGKILAYRELYKLQSTYCEPLLALAKKDEGSRIYTSFLQTGTSTGRLSSKNPNL 634

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP +  L + +R  F +      +  DYSQIELR+LAH ++   L + F+N  DIH  
Sbjct: 635 QNIPARGSLAKDVRECFEAREGYSFVGLDYSQIELRLLAHFSRDPALLEAFKNDEDIHAR 694

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  IFG +      Q R  AK+INF +IYG+   +LA Q+ I R+EA +YI+RYF  F 
Sbjct: 695 TAISIFGSS----DGQNRAVAKSINFGLIYGMGSSKLANQVNITRAEAKEYIERYFKAFA 750

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I E++E  K   +  G+V+T+ GR+ ++D   S       + ER A+N   QGSAAD+ 
Sbjct: 751 TIKEFLESIKISAKNEGFVQTLLGRKRYFD-FKSATPMQMAMFEREAVNTVFQGSAADLV 809

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ V  +L+       MLLQIHDEL+FEV +E      +    +ME+       L V
Sbjct: 810 KMAMVKVRANLDK---NASMLLQIHDELIFEVKDEFAQEFGRATQKTMEE----IYTLNV 862

Query: 961 PLKVNIKVSNNWQE 974
           PLK ++ ++ NW E
Sbjct: 863 PLKTSLNIAKNWGE 876


>gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180]
 gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180]
          Length = 897

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 264/986 (26%), Positives = 442/986 (44%), Gaps = 112/986 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDKKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEMSGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +  ++  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLVKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYA 237
             Q + GDS DN  GI GIG K A  LLQ+ G+LE I  N   +K     K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLVKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++++     N    +++    D+  K S                           
Sbjct: 293 -SPTPLIVENAPILNNAPTLDSTPILDSAPKKSHM------------------------- 326

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         + NT+ +  +++KL+   +  F  +    D    K +A+A    DQ
Sbjct: 327 ------------IILENTELLSMFLEKLKNPNARVFMRLVLDKD---KKILALAFLLQDQ 371

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  +     +I               IGH++K     L
Sbjct: 372 GYFLPLE-EALFSPFSLEFLQNAFSQMLQHAQI---------------IGHDLKPLLSFL 415

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y + +      D  +++++ +  +       + +++L          ++  IP +KI
Sbjct: 416 KAKYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL----------KEELIPHEKI 463

Query: 534 SDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            D + +   +E      N + +L        + E LL +   ++ P + V+  ME  G +
Sbjct: 464 KDFKTKAEKLELLSVELNALKRLCEYFEKGGLEEGLLSLARGVETPFMKVLMGMEFQGFK 523

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID    K++  E    L  LE  I DL G  FNL+SPKQLG++L+ KL+ P         
Sbjct: 524 IDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLGEVLYEKLELPKNKS----- 578

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T 
Sbjct: 579 -HSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTA 636

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L 
Sbjct: 637 TGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 696

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP SEA
Sbjct: 697 EAFLKGRDIHLETSKALFG---EDLAKKKRSIAKSINFGLVYGMGSKKLSETLNIPLSEA 753

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFP I +Y+   +  + +     T+ GR   +D   +    I+    R  +
Sbjct: 754 KSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRAFDFTGA-NDYIKGNYLREGV 812

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NA  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +
Sbjct: 813 NAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL 871

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
                    LRVPL+ +  V+N W E
Sbjct: 872 ---NDEVYPLRVPLETSAFVANRWNE 894


>gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27]
 gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27]
          Length = 905

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 264/984 (26%), Positives = 437/984 (44%), Gaps = 100/984 (10%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +EI GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 GSAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD     +   A++     D                   S+  P+K  L  L+
Sbjct: 293 -SPTPLILDNVPVLDSTPALDNAPTSDNAP---------------TSDNAPKKSRLIVLE 336

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +                    +++KL+   +  F  +    D    K +A+A    DQ
Sbjct: 337 SAAPLS----------------AFLEKLKNPNARVFMRLVLDKD---KKILALAFLYEDQ 377

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  +      IL          H   IGH++K     L
Sbjct: 378 GYFLPLE-EALFSPFSLEFLQNAFSQ------ILQ---------HACIIGHDLKPLLSFL 421

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPID 531
             +Y +S+      D  +++++ +  +       + +++L       E +K  K+   ++
Sbjct: 422 KAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVLKEYLKEDLIPHEKIKDFKTKSKVE 479

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+    V+ +A++                + E LL +   ++ P + V+  ME  G +ID
Sbjct: 480 KLELLSVELNALKRLC------EYFEKGGLEEDLLTLARDIETPFMKVLMGMEFQGFKID 533

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K +  E    L  LE  I DL G  FNL+SPKQL ++L+ KL  P           
Sbjct: 534 APYFKHLEQEFKNELHVLEHQILDLIGVDFNLNSPKQLSEVLYEKLGLPKNKS------H 587

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TG
Sbjct: 588 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATG 646

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L + 
Sbjct: 647 RLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEA 706

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   +  +FG ++   + + R  AK+INF ++YG+   +L+  L IP SEA  
Sbjct: 707 FLKGRDIHLETSKALFGGDL---AKEKRSIAKSINFGLVYGMGSKKLSETLNIPLSEAKS 763

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI+ YF RFP I +Y+ + K  + +     T+ GR   +D        I+    R  +NA
Sbjct: 764 YIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGVNDYIKGNYLREGVNA 822

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
             QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      + I   +  
Sbjct: 823 IFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPKLQREIQRIL-- 879

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                  LRVPL+ +  V+N W E
Sbjct: 880 -NDEVYPLRVPLETSAFVANRWNE 902


>gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908]
          Length = 889

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 270/982 (27%), Positives = 436/982 (44%), Gaps = 112/982 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A       + G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKTKPLTNNKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +EI GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +  ++  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLVKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  GI GIG K A  LLQ+ G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDL-------- 290

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                        EN    +E     +                   S+  P+K  +  L+
Sbjct: 291 -------------ENSPFIVENAPILENAPA---------------SDNAPKKSRMIVLE 322

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT+ +  +++KLE   +  F  +    D    K +A+A    +Q
Sbjct: 323 ----------------NTELLSMFLEKLENPNARVFMRLVLDKD---KKVLALAFLLQEQ 363

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  +      IL          H   IGH++K     L
Sbjct: 364 GYFLPLE-EALFSPFSLEFLQNAFSQ------ILQ---------HACIIGHDLKPLLSFL 407

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y +S+      D  +++++ +  +   D      + L    KE L S +        
Sbjct: 408 KAKYQVSLENIRIQDTQILAFLKNPEKVGFD------EALKEYLKEDLVSHEKIKDFK-- 459

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           + ++  E      N + +L        + E LL +   ++ P + V+  ME  G +ID  
Sbjct: 460 AKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLARDIETPFVKVLMGMEFQGFKIDAP 519

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            LK +  E    L  LE  I DL G  FNL+SPKQLG++L+ KL  P           +T
Sbjct: 520 YLKCLEQEFKNELNVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKS------HST 573

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGRL
Sbjct: 574 DEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATGRL 632

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L + F 
Sbjct: 633 SSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFL 692

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP SEA  YI
Sbjct: 693 KGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLSIPLSEAKSYI 749

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RFP I +Y+   +  + +     T+ GR   +D  N     ++    R  +NA  
Sbjct: 750 EAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIF 808

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +    
Sbjct: 809 QGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL---N 864

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  V+N W E
Sbjct: 865 DEVYPLRVPLETSAFVANRWDE 886


>gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99]
 gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I
 gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99]
          Length = 897

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 257/982 (26%), Positives = 427/982 (43%), Gaps = 104/982 (10%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVGGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L                  N   ++   LK   F   +  +  +     
Sbjct: 239 GSAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLENS----- 293

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P +++     N    ++     D   K S+   L            P  +FLE+L+
Sbjct: 294 ----PFIVENVPILNSTPILDNTPALDNAPKKSRMIVLES--------AEPLSMFLEKLE 341

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +           +++                               K +A+A    DQ
Sbjct: 342 NPNARVFMR----LVLDKDK----------------------------KILALAFLLQDQ 369

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  +                 +H   IGH++K     L
Sbjct: 370 GYFLPLE-EALFSPFSLEFLQNAFSQML---------------QHACIIGHDLKPLLSFL 413

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y + +      D  +++++ +  +       + +++L    KE L   +        
Sbjct: 414 KAKYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL----KEDLIPHEKIKDFKTK 467

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S ++  E      N + +L        + E LL +   ++ P + V+  ME  G +ID  
Sbjct: 468 SKAEKSELLSMELNALKRLCEYFEKGGLEEDLLTLARDIETPFVKVLMGMEFQGFKIDAP 527

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             K++  E    L  LE  I DL G  FNL+SPKQLG++L+ KL  P           +T
Sbjct: 528 YFKRLEQEFKNELNVLERQILDLIGVDFNLNSPKQLGEVLYDKLGLPKNKS------HST 581

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGRL
Sbjct: 582 DEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATGRL 640

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L + F 
Sbjct: 641 SSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFL 700

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP SEA  YI
Sbjct: 701 KGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLSIPLSEAKSYI 757

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RFP I +Y+   +  + +     T+ GR   +D        ++    R  +NA  
Sbjct: 758 EAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFD-FTGVNDYVKGNYLREGVNAIF 816

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +    
Sbjct: 817 QGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL---N 872

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  ++  W E
Sbjct: 873 DEVYPLRVPLETSAFIAKRWNE 894


>gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017]
          Length = 889

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/982 (27%), Positives = 437/982 (44%), Gaps = 112/982 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKTKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +EI GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +  ++  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLVKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  GI GIG K A  LLQ+ G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDL-------- 290

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                        EN    +E     +                   S+  P+K  +  L+
Sbjct: 291 -------------ENSPFIVENAPILENAPA---------------SDNAPKKSRMIVLE 322

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT+ +  +++KLE   +  F  +    D    K +A+A    +Q
Sbjct: 323 ----------------NTELLSMFLEKLENPNARVFMRLVLDKD---KKVLALAFLLQEQ 363

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  +      IL          H   IGH++K     L
Sbjct: 364 GYFLPLE-EALFSPFSLEFLQNAFSQ------ILQ---------HACIIGHDLKPLLSFL 407

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y +S+      D  +++++ +  +   D     +    Y +++++   K     D  
Sbjct: 408 KAKYQVSLENIRIQDTQILAFLKNPEKVGFD-----EALKEYLKEDLVSHEKIK---DFK 459

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           + ++  E      N + +L        + E LL +   ++ P + V+  ME  G +ID  
Sbjct: 460 AKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLARDIETPFVKVLMGMEFQGFKIDAP 519

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            LK +  E    L  LE  I DL G  FNL+SPKQLG++L+ KL  P           +T
Sbjct: 520 YLKCLEQEFKNELNVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKS------HST 573

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGRL
Sbjct: 574 DEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATGRL 632

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L + F 
Sbjct: 633 SSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFL 692

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP SEA  YI
Sbjct: 693 KGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLSIPLSEAKSYI 749

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RFP I +Y+   +  + +     T+ GR   +D  N     ++    R  +NA  
Sbjct: 750 EAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIF 808

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +    
Sbjct: 809 QGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL---N 864

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  V+N W E
Sbjct: 865 DEVYPLRVPLETSAFVANRWDE 886


>gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32]
          Length = 893

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 258/982 (26%), Positives = 437/982 (44%), Gaps = 108/982 (10%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +  ++  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTHIYSKDKDFNQLLSDKIALFD--GKTEFLVKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L  +               N   ++   LK   F   +  +  +     
Sbjct: 239 GSAFLSKELATLERECIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLENSPTPLI 298

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           ++  P+                               L +  +  N+ +    + LE   
Sbjct: 299 SDNAPL-------------------------------LENAPASDNAPKKSCMIVLE--- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT+ +  +++KL+   +  F  +   +D    K +A+A    DQ
Sbjct: 325 ----------------NTEPLSAFLEKLKKTNARIFMRLV--LDK-EKKVLALAFLYEDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
               S + E +F   S+   Q++  K                 +H   IGH++K     L
Sbjct: 366 GYFLSLE-EALFSPFSLEFLQNAFFKML---------------QHACIIGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
              Y + +      D  +++++ +  +       + +++L   ++E++   K        
Sbjct: 410 KANYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL---KEELIPHEKIK-DFKTK 463

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S ++  E      N + +L        + E LL +   ++ P + V+  ME  G +ID  
Sbjct: 464 SKAEKSEQLSLELNALKRLCEYFEKGGLEEGLLALAREVETPFVKVLMGMEFQGFKIDAP 523

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P          ++T
Sbjct: 524 YFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKS------RST 577

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGRL
Sbjct: 578 DEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATGRL 636

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L   F 
Sbjct: 637 SSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFL 696

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA  YI
Sbjct: 697 KGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYI 753

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RFP I +Y+ + K  + +     T+ GR   +D   +    I+    R  +NA  
Sbjct: 754 EAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYIKGNYLREGVNAIF 812

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +    
Sbjct: 813 QGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALELQQEIQRIL---N 868

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  ++  W E
Sbjct: 869 DEVYPLRVPLETSAFIAKRWNE 890


>gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1]
 gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1]
          Length = 899

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 258/982 (26%), Positives = 434/982 (44%), Gaps = 102/982 (10%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDKKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R+E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRSEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L                  N   ++   LK   F   +  +  +     
Sbjct: 239 GSAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLENSPTPLI 298

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++  +   +N                                +  P+K  L  L+
Sbjct: 299 LDNAPILDSVPILDNASAL----------------------------DNAPKKSRLIVLE 330

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT+ +  +++KL+   +  F      +     K +A+A    DQ
Sbjct: 331 ----------------NTELLSAFLEKLKNSNARIF---MRLVLNKEKKVLALAFLYEDQ 371

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K                 +H   IGH++K     L
Sbjct: 372 GYFLPLE-EALFSPFSLEFLQNAFFKML---------------QHACIIGHDLKPLLSFL 415

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y + +      D  +++++ +  +      ++ +++L    KE L   +        
Sbjct: 416 KAKYQVPLENIRIQDTQILAFLKNPEKV--GFDAVLKEYL----KEDLIPHEKIKDFKTT 469

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S ++  E      N + +L        + E LL +   ++ P + V+  ME  G +ID  
Sbjct: 470 SKAEKSEQLSLELNALKRLCEYFEKGGLEENLLSLARGVETPFVKVLMDMEFQGFKIDAP 529

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             K++  E    L  LE  I DL G  FNL+SPKQL ++L+ KL+ P           +T
Sbjct: 530 YFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLSEVLYEKLELPQNKS------HST 583

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGRL
Sbjct: 584 DEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATGRL 642

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L + F 
Sbjct: 643 SSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFL 702

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   +  +FG ++   + + R  AK+INF ++YG+   +L+  L I  +EA  YI
Sbjct: 703 KGRDIHLETSKALFGGDL---AKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEAKSYI 759

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RFP I +Y+ + K  + +     T+ GR   +D  N     ++    R  +NA  
Sbjct: 760 EAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIF 818

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +    
Sbjct: 819 QGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALELQQEIQRIL---N 874

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  V+N W E
Sbjct: 875 DEVYPLRVPLETSAFVANRWNE 896


>gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
 gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
          Length = 887

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 256/983 (26%), Positives = 430/983 (43%), Gaps = 114/983 (11%)

Query: 2   QKENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +      
Sbjct: 6   TKEGTLALIDTFAYLFRSYYMSAKTKPLTNDKGFPTGLLMGLVGMIKKFYKDRKNMPF-- 63

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
                 +    T R+E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD
Sbjct: 64  -IVFALESQTKTKRSEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADD 122

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IA+   ++    +   I S DKD  QL++    L+D   + +   +  ++K+GI P + 
Sbjct: 123 VIASLATLSP---YKTRIYSKDKDFNQLLNDKIALFD--GKTEFLAKDCVEKYGILPSQF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEY 236
              Q + GDS DN  G+ GIG K A  LLQ+ G+LE I  N      +   K  + ++  
Sbjct: 178 TDYQGIVGDSSDNYKGVKGIGSKNAKELLQQLGSLEKIYNNLDLAKNLLSPKMYQALIHD 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCD 295
            E+A LS++L  L  +               N   ++   LK   F   +  +       
Sbjct: 238 KESAFLSKELATLERECIKEFDFLSCAFPSENPLWKIKDELKEYGFISTLRDL------- 290

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                                          + +    + D+T  ++S  T   + +   
Sbjct: 291 -------------------------------ENTPMPLILDETPLLDSAPTKSSMII--- 316

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                          + NT     +++KLE   +  F  +         + +A+A     
Sbjct: 317 ---------------LENTAPFSAFLEKLENSSARVFARLVLNK---EKEILALAFLFEC 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           Q      + E +F   S+   Q++  K                 +H   IGH++K     
Sbjct: 359 QGYFLPLE-EALFSPFSLEFLQNAFSKML---------------QHACIIGHDLKPLLSF 402

Query: 476 L-HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           L  +Y +S+      D  +++++ +  +       + +++L    KE L   +       
Sbjct: 403 LKAKYQVSLENIHIQDTQILAFLKNPEKV--GFDEVLKEYL----KEDLILHEKIKDFKT 456

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            S ++  E      N + +L      + + E LL + + ++ P + V+  ME  G +ID 
Sbjct: 457 KSKAEKLERLNVELNALKRLCEYFEKEGLEEDLLSLAKEIEMPFMKVLMNMEFQGFKIDA 516

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
              K++  E    L  LE  I DL GE FNL+SPKQL  +L+ KL  P           +
Sbjct: 517 PYFKRLEQEFKDELKVLERQILDLIGEDFNLNSPKQLSGVLYEKLNLPKNKS------HS 570

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGR
Sbjct: 571 TDEKNLLKIMDKHPSIPLILEYRELNKLSNTYITPLLRLKDKDDK-IHTTFIQTGTATGR 629

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIP+++  G  IR+ FI S     L+  DYSQIELR+LAH ++   L + F
Sbjct: 630 LSSHSPNLQNIPVRSSKGLLIRKGFISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAF 689

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   +  +FG N    + + R  AK+INF ++YG+   +L+  L IP +EA  Y
Sbjct: 690 LKGRDIHLETSRALFGENS---AKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSY 746

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF RFP I +Y+   +  + +     T+ GR   +D  N     ++    R  +NA 
Sbjct: 747 IEAYFKRFPSIKDYLNNMQEEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVNAI 805

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
            QGSA+D+ +  M+ V +  ++   + ++LLQ+HDEL+FE+ E+      Q I   +   
Sbjct: 806 FQGSASDLLKLGMLKVSERFKNDS-SVRLLLQVHDELIFEIEEKNALELQQEIQRILNN- 863

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 LRVPL+ +  ++  W +
Sbjct: 864 --EVYALRVPLETSAFIAKRWND 884


>gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
 gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
          Length = 891

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 255/985 (25%), Positives = 434/985 (44%), Gaps = 114/985 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 5   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDKKNMPF--- 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 62  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDV 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 122 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 177 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 237 ESAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 290

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD          +E     D   K S    L                      
Sbjct: 291 -SPTPLILDN------APLLENTPTLDNAPKKSCMIVLESAAP----------------- 326

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                               +  +++KL+   +  F  +   +D    K +A+A    DQ
Sbjct: 327 --------------------LSAFLEKLKNSNARIFARLA--LDK-EKKVLALAFLYEDQ 363

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++               +  ++     IGH++K     L
Sbjct: 364 GYFLPLE-EALFSPFSLEFLQNA-------------FSQILQHAQI--IGHDLKPLLSFL 407

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHD---IASIAQKWLSYTRKEILKSRKSSIPI 530
             +Y +S+      D  +++++ +  +   D      + ++W+ + + +  K++  +  +
Sbjct: 408 KAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKAEKL 467

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +++             + + +L        + E LL +   ++ P + V+  ME  G +I
Sbjct: 468 EQLD---------RELHALKRLCEYFEKGGLEEGLLALAREVETPFMKVLMGMEFQGFKI 518

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P          
Sbjct: 519 DAPYFKRLEQEFKNELHVLERQILELIGADFNLNSPKQLSEILYEKLELPQNKS------ 572

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           ++T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T T
Sbjct: 573 RSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTAT 631

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L  
Sbjct: 632 GRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMD 691

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA 
Sbjct: 692 AFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAK 748

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI+ YF RFP I +Y+ + K  + +     T+ GR   +D   +    I+    R  +N
Sbjct: 749 SYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYIKGNYLREGVN 807

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   + 
Sbjct: 808 AIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALELQQEIQRIL- 865

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
                   LRVPL+ +  ++  W E
Sbjct: 866 --NDEVYPLRVPLETSAFIAKRWNE 888


>gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16]
          Length = 893

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 256/985 (25%), Positives = 439/985 (44%), Gaps = 114/985 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMGAKNKPLTNVKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++L+                          + L D T    S+  P+K  +  L+
Sbjct: 293 -SPTPLILEN-------------------------APLLDNTPA--SDNAPKKSRMIVLE 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           N + +  ++++L+   +  F  +   +D    K +A+A    DQ
Sbjct: 325 ----------------NPEPLSAFLERLKKTNARIFMRLV--LDK-EKKVLALAFLLEDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++               +  ++     IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLQNA-------------FSQILQHAQI--IGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHD---IASIAQKWLSYTRKEILKSRKSSIPI 530
             +Y +S+      D  +++++ +  +   D      + ++W+ + + +  K++  +  +
Sbjct: 410 KAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKAGKL 469

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +++             N + +L        + E LL +   ++ P + V+  ME  G +I
Sbjct: 470 EQLDME---------LNALKRLCEYFEKGGLEEGLLALAREVETPFVKVLMGMEFQGFKI 520

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P          
Sbjct: 521 DAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKS------ 574

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T T
Sbjct: 575 HSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTAT 633

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L  
Sbjct: 634 GRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMD 693

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA 
Sbjct: 694 AFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAK 750

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y + YF RFP I +Y+ + K  + +     T+ GR   +D        I+    R  +N
Sbjct: 751 SYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGVNDYIKGNYLREGVN 809

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   + 
Sbjct: 810 AIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALELQQEIQRIL- 867

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
                   LRVPL+ +  ++  W E
Sbjct: 868 --NDEVYPLRVPLETSAFIAKRWNE 890


>gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51]
          Length = 885

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 262/984 (26%), Positives = 436/984 (44%), Gaps = 118/984 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 5   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E    YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 62  IVFALESQTKTKRAEKLGQYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDV 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 122 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 177 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E+A LS++L  L                  N   L+     L+    I+ +    +    
Sbjct: 237 ESAFLSKELATLERGCIKEFDFSSCTFPSENP--LLKIKDELKEYGFISTLRDLEN---- 290

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
           +  P++LD                 D+T K S    L +         TP   FLE+L+K
Sbjct: 291 SPTPLILDNA------------PLLDSTPKKSCMIVLEN--------TTPLSAFLEKLKK 330

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            +           +++ +                             K +A+A    DQ 
Sbjct: 331 TNARIFMR----LVLDKEK----------------------------KVLALAFLYEDQG 358

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL- 476
                + E +F   S+   Q++  K     +I               IGH++K     L 
Sbjct: 359 YFLPLE-EALFSPFSLEFLQNAFFKMLQHAQI---------------IGHDLKPLLSFLK 402

Query: 477 HRYGISMRGFE--DIMLMSYVLDSGRSSHD---IASIAQKWLSYTRKEILKSRKSSIPID 531
            +Y +S+      D  +++++ +  +   D      + ++W+ + + +  K++  +  ++
Sbjct: 403 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKAGKLE 462

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           ++             N + +L        + E LL +   ++ P + V+  ME  G +ID
Sbjct: 463 QLD---------RELNALRRLCEYFEKGGLEEGLLALAREVETPFMKVLMGMEFQGFKID 513

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P           
Sbjct: 514 APYFKRLEQEFKNELHVLERQILELIGADFNLNSPKQLSEILYEKLELPKNKS------H 567

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TG
Sbjct: 568 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATG 626

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L   
Sbjct: 627 RLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDA 686

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP SEA  
Sbjct: 687 FLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLSEAKS 743

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI+ YF RFP I +Y+ + K  + +     T+ GR   +D   +    I+    R  +NA
Sbjct: 744 YIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYIKGNYLREGVNA 802

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
             QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +  
Sbjct: 803 IFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL-- 859

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                  LRVPL+ +  ++  W E
Sbjct: 860 -NDEVYPLRVPLETSAFIAKRWNE 882


>gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018]
          Length = 889

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 269/982 (27%), Positives = 434/982 (44%), Gaps = 112/982 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKTKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G    +I GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCGKISGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +  ++  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLVKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  GI GIG K A  LLQ+ G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDL-------- 290

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                        EN    +E     +                   S+  P+K  +  L+
Sbjct: 291 -------------ENSPFIVENAPILENAPA---------------SDNAPKKSRMIVLE 322

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT+ +  +++KLE   +  F  +    D    K +A+A    +Q
Sbjct: 323 ----------------NTELLSMFLEKLENPNARVFMRLVLDKD---KKVLALAFLLQEQ 363

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  +      IL          H   IGH++K     L
Sbjct: 364 GYFLPLE-EALFSPFSLEFLQNAFSQ------ILQ---------HACIIGHDLKPLLSFL 407

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y +S+      D  +++++ +  +   D      + L    KE L S +        
Sbjct: 408 KAKYQVSLENIRIQDTQILAFLKNPEKVGFD------EALKEYLKEDLVSHEKIKDFK-- 459

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           + ++  E      N + +L        + E LL +   ++ P + V+  ME  G +ID  
Sbjct: 460 AKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLARDIETPFVKVLMGMEFQGFKIDAP 519

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            LK +  E    L  LE  I DL G  FNL+SPKQLG++L+ KL  P           +T
Sbjct: 520 YLKCLEQEFKNELNVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKS------HST 573

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGRL
Sbjct: 574 DEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATGRL 632

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L + F 
Sbjct: 633 SSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFL 692

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP SEA  YI
Sbjct: 693 KGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLSIPLSEAKSYI 749

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RFP I +Y+   +  + +     T+ GR   +D  N     ++    R  +NA  
Sbjct: 750 EAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIF 808

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +    
Sbjct: 809 QGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL---N 864

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  V+N W E
Sbjct: 865 DEVYPLRVPLETSAFVANRWDE 886


>gi|332674238|gb|AEE71055.1| DNA-directed DNA polymerase I [Helicobacter pylori 83]
          Length = 893

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 259/982 (26%), Positives = 430/982 (43%), Gaps = 108/982 (10%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEETLALIDTFAYLFRSYYMGAKNKPLTNVKGFPTGLLTGLVGMVKKFYKDKKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIVLFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 GSAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD                                      E TP      +  
Sbjct: 293 -SPTPLILDNTPL---------------------------------LENTPASDNAPKKS 318

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           ++            + NT+ +  +++KL+   +  F  +   +D    K +A+A    DQ
Sbjct: 319 RM----------IVLENTEPLSAFLEKLKKTNARIFMRLV--LDK-EKKVLALAFLYEDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K                 +H   IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLQNAFFKML---------------QHVQIIGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y +S+      D  +++++ +  +       + +++L    KE L   +        
Sbjct: 410 KAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL----KEELILHEKIKDFKTK 463

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S ++  E      N + +L        + E LL +   ++ P + V+  ME  G +ID  
Sbjct: 464 SKAEKSEQLDRELNALRRLCEYFEKGGLEEGLLALAREVETPFVKVLMDMEFQGFKIDAP 523

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P           +T
Sbjct: 524 YFKRLEQEFKNELHVLERQILELIGTDFNLNSPKQLSEILYEKLELPKNKS------HST 577

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGRL
Sbjct: 578 DEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATGRL 636

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L   F 
Sbjct: 637 SSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFL 696

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA  Y 
Sbjct: 697 KGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYT 753

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RFP I +Y+ + K  + +     T+ GR   +D        I+    R  +NA  
Sbjct: 754 EAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGVNDYIKGNYLREGVNAIF 812

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +    
Sbjct: 813 QGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALELQQEIQRIL---N 868

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  ++  W E
Sbjct: 869 DEVYPLRVPLETSAFIAKRWNE 890


>gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A]
          Length = 893

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 265/988 (26%), Positives = 436/988 (44%), Gaps = 120/988 (12%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  GI GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGIKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD   T                                  E TP         
Sbjct: 293 -SPTPLILDNTPT---------------------------------LENTPA-------- 310

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S           + NT+ +  +++KL+   +  F  +   +D    K +A+A    DQ
Sbjct: 311 --SDSAPKKSRLIVLENTEPLSAFLEKLKNSNARIFMRLA--LDK-EKKVLALAFLYEDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K     +I               IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLQNAFFKMLQHAQI---------------IGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y +S+      D  +++++ +  +       + +++L          ++  IP +KI
Sbjct: 410 KAKYQVSVEDIRIQDTQILAFLKNPEKV--GFDEVLKQYL----------KEEWIPHEKI 457

Query: 534 SDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            D + +  A +        N + +L        + E LL +   ++ P + V+  ME  G
Sbjct: 458 KDFKTKNKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAREVETPFVKVLMGMEFQG 517

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            +ID    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P       
Sbjct: 518 FKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKS--- 574

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    
Sbjct: 575 ---HSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTG 630

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S  PNLQNIP+++  G  IR+ FI S     L+  DYSQIELR+LAH ++   
Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGLLIRKGFISSSKEYCLLGVDYSQIELRLLAHFSQDKD 690

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +
Sbjct: 691 LMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLN 747

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D +      I+    R 
Sbjct: 748 EAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVG-VNDHIKGNYLRE 806

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            +NA  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      + I  
Sbjct: 807 GVNAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALELQREIQR 865

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +         LRVPL+ +  ++  W E
Sbjct: 866 IL---NDEVYPLRVPLETSAFIAKRWNE 890


>gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I
          Length = 891

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 260/986 (26%), Positives = 435/986 (44%), Gaps = 118/986 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K    ++   
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYRALIHDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ASAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD                          + L D T  ++   TP+K  +  L+
Sbjct: 293 -SPTPLILDN-------------------------APLLDNTPALD--NTPKKSCMIVLE 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +                    +++KLE   +  F  +   +D    K +A+A    DQ
Sbjct: 325 SAAPLS----------------AFLEKLEKTNARVFARLV--LDK-EKKVLALAFLYEDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K     +I               IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLQNAFFKMLQHAQI---------------IGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y + +      D  +++++ +  +       + +++L          ++  IP +KI
Sbjct: 410 KAKYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL----------KEELIPHEKI 457

Query: 534 SDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            D + +   +E      N + +L        + E LL +   ++ P + V+  ME  G +
Sbjct: 458 KDFKTKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAREIETPFMKVLMGMEFQGFK 517

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID    K++  E    L  LE  I +L G  FNL+SPKQL ++L+ KL  P         
Sbjct: 518 IDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEVLYDKLGLPKNKS----- 572

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T 
Sbjct: 573 -HSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTA 630

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L 
Sbjct: 631 TGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 690

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L I  +EA
Sbjct: 691 EAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEA 747

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFP I +Y+ + K  + +     T+ GR   +D   +    ++    R  +
Sbjct: 748 KSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYVKGNYLREGV 806

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NA  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +
Sbjct: 807 NAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL 865

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
                    LRVPL+ +  ++  W E
Sbjct: 866 ---NDEVYPLRVPLETSAFIAKRWNE 888


>gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 815

 Score =  559 bits (1440), Expect = e-156,   Method: Composition-based stats.
 Identities = 228/875 (26%), Positives = 402/875 (45%), Gaps = 106/875 (12%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    L ++DG S  +RAFYA P  +   D G   NA+ GF  ML  +++  R     +H
Sbjct: 8   EAPQRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQR----PTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+E Y +YKA R + P     Q+ L     +A GIP + ++G+EADDI
Sbjct: 64  VAVAFDLSGPTFRSEEYAEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP 176
           +AT +  AE+ G+   ++S D+D  QL+S  T +    K       +D + V+ K+G+ P
Sbjct: 124 VATLSARAEEAGWEAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAP 183

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +   L AL G++ DN+PG+PG+G   AA  L++YG+L+ +L +A  I  KK  E + E+
Sbjct: 184 AQYPELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKK-GEALREH 242

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E  R +R+L  L  D+ + I LE + LE      +     AL+F ++  RV   +    
Sbjct: 243 LEDVRRNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERVFEVFGER- 301

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                                + +       E  P+        
Sbjct: 302 -------------------------------------VGEDAPPPEVEAAPE-------- 316

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                      +T+    +D++ ++  +  T+      +    +      P+        
Sbjct: 317 -----------FTEATTAEDVRAFLAAEAGTLLGVHVDVEGPALLPRRKVPV-------P 358

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
               T   V  +     +H + D    +     +++ +++        K  H++K     
Sbjct: 359 GTFGTPVGVALVGEHAGLHVTLDG---DAPDPALVAAVREALGEGGLAKAVHDLKRTLKA 415

Query: 476 LHR--YGISMRG-------FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           L     G  +          +D++L +Y++   R    + ++A+  L        +  + 
Sbjct: 416 LAAPTEGDGLGPDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLAAPREPAQQ 475

Query: 527 --SIPID------KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
                 D          +     A+  + V+ +L     P+++      + + L+ P+  
Sbjct: 476 RAQGTFDLDGGQAAADRAARAADAVRAAWVVRRLSTQFTPQVLDRGAQRLLQELEIPLSR 535

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY-----DLSGEKFNLSSPKQLGDIL 633
           ++++ME+ GI +D D L  +  + +    + +E+ +     +  G + NL SPKQL ++L
Sbjct: 536 LLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASVAEETGGMQVNLGSPKQLQEVL 595

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F +L  P   KTKTG         + +    +P ++N++  R  +K++ T  + L   + 
Sbjct: 596 FERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDATKLRQT-VEGLLETVA 654

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP--TK--KLISAD 749
               R+HT YS  +  TGRL+SL PNLQNIP++T+ G++IR  F++     +   L+SAD
Sbjct: 655 PDD-RIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGRRIREVFVADEVAGEQAVLLSAD 713

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE+RI+AH+++   L Q F    D+H  V +++FGV+ ++V+ + R   K +++ + 
Sbjct: 714 YSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLA 773

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           YG+S F L+ QL+I   EA   +K YF RF G+ E
Sbjct: 774 YGLSSFGLSKQLKISVDEARGLMKGYFDRFGGVPE 808


>gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7]
          Length = 885

 Score =  559 bits (1440), Expect = e-156,   Method: Composition-based stats.
 Identities = 256/982 (26%), Positives = 429/982 (43%), Gaps = 116/982 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTHIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDL-------- 290

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                        EN  + +E     D   K S+   L                      
Sbjct: 291 -------------ENSPLIVENAPASDNAPKKSRMIVLE--------------------- 316

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT  +  +++KL+   +  F      +     K +A+A    DQ
Sbjct: 317 ----------------NTAPLSAFLEKLKNSNARVF---VRLVLNKEKKVLALAFLLQDQ 357

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S    Q++  +                 +H   IGH++K     L
Sbjct: 358 GYFLPLE-EALFSPFSSEFLQNAFSQML---------------QHASIIGHDLKPLLSFL 401

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y +S+      D  +++++ +  +       + +++L   ++E++   K        
Sbjct: 402 KAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL---KEELIPHEKIK-DFKTT 455

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S ++  E      N + +L        + E LL +   ++ P + V+  ME  G +ID  
Sbjct: 456 SKAEKLERLDMELNALKRLCAYFEKGGLEEGLLALAREVETPFVKVLMGMEFQGFKIDAP 515

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             K++  E    L  LE  I +L G  FNL+SPKQL ++L+ KL+ P           +T
Sbjct: 516 YFKRLEQEFKDELKVLERQILELIGVDFNLNSPKQLSEVLYEKLELPKNKS------HST 569

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGRL
Sbjct: 570 DEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATGRL 628

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L + F 
Sbjct: 629 SSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFL 688

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   +  +FG    +++ + R  AK+INF ++YG+   +L+  L IP +EA  YI
Sbjct: 689 KGRDIHLETSKALFG---GELAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYI 745

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RFP I +Y+ + K  + +     T+ GR   +D   +    ++    R  +NA  
Sbjct: 746 EAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYVKGNYLREGVNAIF 804

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +    
Sbjct: 805 QGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL---N 860

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  ++  W E
Sbjct: 861 DEVYPLRVPLETSAFMAKRWNE 882


>gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8]
 gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8]
          Length = 893

 Score =  559 bits (1440), Expect = e-156,   Method: Composition-based stats.
 Identities = 258/982 (26%), Positives = 428/982 (43%), Gaps = 108/982 (10%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 GSAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE------- 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                   +  T +      +L    +  N+ +  + + LE   
Sbjct: 292 ------------------------NFSTPLILDNAPALDSAPTSDNAPRKSRMIVLENAA 327

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            LS                    +++KL+   +  F      +     K +A+A    DQ
Sbjct: 328 PLS-------------------AFLEKLKNSNARVF---MRLVLNKEKKVLALAFLLQDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   +++  +      IL          H   IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLENAFSQ------ILQ---------HACIIGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y + +      D  +++++ +  +       + +++L    KE L   +        
Sbjct: 410 KAKYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL----KEDLIPHEKIKDFKTK 463

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           S ++  E      N + +L        + E LL +   ++ P + V+  ME  G +ID  
Sbjct: 464 SKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALARGVETPFMKVLMGMEFQGFKIDVP 523

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             K++  E    L  LE  I DL G  FNL+SPKQLG++L+ KL  P           +T
Sbjct: 524 YFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKS------HST 577

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGRL
Sbjct: 578 DEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATGRL 636

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L + F 
Sbjct: 637 SSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFL 696

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA  YI
Sbjct: 697 KGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYI 753

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + YF RFP I +Y+   K  + +     T+ GR   +D  N     ++    R  +NA  
Sbjct: 754 EAYFKRFPSIKDYLNGMKEEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIF 812

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +    
Sbjct: 813 QGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL---N 868

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  ++  W E
Sbjct: 869 DEVYPLRVPLETSAFIAKRWNE 890


>gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
 gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
          Length = 892

 Score =  559 bits (1440), Expect = e-156,   Method: Composition-based stats.
 Identities = 260/986 (26%), Positives = 435/986 (44%), Gaps = 118/986 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 8   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 64

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 65  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEADDV 124

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 125 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K    ++   
Sbjct: 180 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYRALIHDK 239

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 240 ASAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 293

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD                          + L D T  ++   TP+K  +  L+
Sbjct: 294 -SPTPLILDN-------------------------APLLDNTPALD--NTPKKSCMIVLE 325

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +                    +++KLE   +  F  +   +D    K +A+A    DQ
Sbjct: 326 SAAPLS----------------AFLEKLEKTNARVFARLV--LDK-EKKVLALAFLYEDQ 366

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K     +I               IGH++K     L
Sbjct: 367 GYFLPLE-EALFSPFSLEFLQNAFFKMLQHAQI---------------IGHDLKPLLSFL 410

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y + +      D  +++++ +  +       + +++L          ++  IP +KI
Sbjct: 411 KAKYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL----------KEELIPHEKI 458

Query: 534 SDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            D + +   +E      N + +L        + E LL +   ++ P + V+  ME  G +
Sbjct: 459 KDFKTKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAREIETPFMKVLMGMEFQGFK 518

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID    K++  E    L  LE  I +L G  FNL+SPKQL ++L+ KL  P         
Sbjct: 519 IDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEVLYDKLGLPKNKS----- 573

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T 
Sbjct: 574 -HSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTA 631

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L 
Sbjct: 632 TGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 691

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L I  +EA
Sbjct: 692 EAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEA 748

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFP I +Y+ + K  + +     T+ GR   +D   +    ++    R  +
Sbjct: 749 KSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYVKGNYLREGV 807

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NA  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +
Sbjct: 808 NAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL 866

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
                    LRVPL+ +  ++  W E
Sbjct: 867 ---NDEVYPLRVPLETSAFIAKRWNE 889


>gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57]
          Length = 893

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 261/988 (26%), Positives = 436/988 (44%), Gaps = 120/988 (12%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMGAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDL-------- 290

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                                         + S    +SD T  +  E TP      +  
Sbjct: 291 ------------------------------ENSPTPLISDNTPLL--ENTPLLDNAPKKS 318

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           ++            + NT+ +  ++++L+   +  F  +   +D    K +A+A    DQ
Sbjct: 319 RM----------IILENTESLSAFLERLKKTNARIFMRLV--LDK-EKKVLALAFLLEDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K     +I               IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLQNAFFKMLQHAQI---------------IGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y +S+      D  +++++ +  +       + +++L          ++  IP +KI
Sbjct: 410 KAKYQVSLEDIRIQDTQILAFLKNPEKV--GFDEVLKQYL----------KEEWIPHEKI 457

Query: 534 SDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            D + +  A +        N + +L        + E LL +   ++ P + V+  ME  G
Sbjct: 458 KDFKTKSKAGKLELLSVELNALKRLCEYFEKGGLEEGLLALAREVETPFMKVLMGMEFQG 517

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            +ID    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL  P       
Sbjct: 518 FKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLGLPKNKS--- 574

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    
Sbjct: 575 ---HSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTG 630

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   
Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKD 690

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +
Sbjct: 691 LMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLN 747

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI+ YF RF  I +Y+ + K  + +     T+ GR   +D   +    I+    R 
Sbjct: 748 EAKSYIEAYFKRFSSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYIKGNYLRE 806

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            +NA  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I  
Sbjct: 807 GVNAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQR 865

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +         LRVPL+ +  ++  W E
Sbjct: 866 IL---NDEVYPLRVPLETSAFMAKRWNE 890


>gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
 gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
          Length = 893

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 263/984 (26%), Positives = 436/984 (44%), Gaps = 112/984 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAERLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L+                 N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLQRGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD          +E     D   K S    L                      
Sbjct: 293 -SPTPLILDN------TPLLENAPLLDNAPKKSCMIVLE--------------------- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT  +  +++KLE   +  F  +   +D    K +A+A    DQ
Sbjct: 325 ----------------NTAPLSAFLEKLENSNARIFMRLV--LDK-EKKVLALAFLYEDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K     +I               IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLQNAFFKMLQHAQI---------------IGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPID 531
             +Y +S+      D  +++++ +  +       + +++L       E +K  K+   ++
Sbjct: 410 KAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVVREYLKEELIPHETIKDFKTKSRVE 467

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+    ++ +A++                + E LL +   ++ P + V+  ME  G +ID
Sbjct: 468 KLEQLDMELNALKRLC------EYFEKGGLEEGLLALAREVETPFMKVLMGMEFQGFKID 521

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K++  E    L  LE  I DL G  FNL+SPKQL +IL+ KL+ P          +
Sbjct: 522 APYFKRLEQEFKDELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKS------R 575

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TG
Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATG 634

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L   
Sbjct: 635 RLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDA 694

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA  
Sbjct: 695 FLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKS 751

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI+ YF RFP I +Y+ + K  + +     T+ GR   +D   +    I+    R  +NA
Sbjct: 752 YIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDHIKGNYLREGVNA 810

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
             QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +  
Sbjct: 811 IFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL-- 867

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                  LRVPL+ +  ++  W E
Sbjct: 868 -NDEVYPLRVPLETSAFMAKRWNE 890


>gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75]
          Length = 893

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 260/988 (26%), Positives = 439/988 (44%), Gaps = 120/988 (12%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + ++   
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIHDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ASAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD                           +L +  +  N+ +  + + LE + 
Sbjct: 293 -SPTPLILDN------------------------APALENAPASDNAPKKSRMIVLENIA 327

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            LS                    +++KL+   +  F  +   +D    K +A+A    DQ
Sbjct: 328 LLS-------------------AFLEKLKKTNARIFARLV--LDK-EKKVLALAFLLQDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   +++  +                 +H   IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLENAFSQML---------------QHVQIIGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
             +Y + +      D  +++++ +  +       + +++L          ++  IP +KI
Sbjct: 410 KAKYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL----------KEEWIPHEKI 457

Query: 534 SDSQVQ------EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            D +++      E      N + +L        + E LL + + ++ P + V+  ME  G
Sbjct: 458 KDFKIKSKVEKLEQLDMELNALKRLCEYFEKGGLEENLLSLAKEVETPFVKVLMGMEFQG 517

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
            +ID    K++  E    L  LE  I +L G  FNL+SPKQLG+IL+ KLK P       
Sbjct: 518 FKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLGEILYEKLKLPKNKS--- 574

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
               +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    
Sbjct: 575 ---HSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTG 630

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITP 766
           T TGRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   
Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKD 690

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L + F    DIH   +  +FG ++   + + R  AK+INF ++YG+   +L+  L I  +
Sbjct: 691 LMEAFLKGRDIHLETSKALFGGDL---AKEKRSIAKSINFGLVYGMGSKKLSETLNISLN 747

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA  YI+ YF RFP I +Y+ + K  + +     T+ GR   +D   +    I+    R 
Sbjct: 748 EAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYIKGNYLRE 806

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            +NA  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I  
Sbjct: 807 GVNAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALELQQEIQR 865

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +         LRVPL+ +  V+  W E
Sbjct: 866 IL---NDEVYPLRVPLETSAFVAKRWNE 890


>gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20]
          Length = 893

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 263/984 (26%), Positives = 438/984 (44%), Gaps = 112/984 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD          +E     D   K S+   L                      
Sbjct: 293 -SPTPLILDN------TPLLENAPLSDNAPKKSRLIVLE--------------------- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT+ +  +++KLE   +  F  +   +D    K +A+A    DQ
Sbjct: 325 ----------------NTEPLSAFLEKLENSNARIFMRLV--LDK-EKKVLALAFLYEDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K                 +H   IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLQNAFFKML---------------QHVQIIGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPID 531
             +Y +S+      D  +++++ +  +       + +++L       E +K  K+   ++
Sbjct: 410 KAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVLKEYLKEELIPHETIKDFKTKNKVE 467

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+    ++ +A++                + E LL +   ++ P++ V+  ME  G +ID
Sbjct: 468 KLEQLDMELNALKRLC------EYFEKGGLEEGLLALARGVETPLMKVLMGMEFQGFKID 521

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K++  E    L  LE  I DL G  FNL+SPKQL +IL+ KL+ P          +
Sbjct: 522 APYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKS------R 575

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TG
Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATG 634

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L   
Sbjct: 635 RLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDA 694

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA  
Sbjct: 695 FLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKS 751

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI+ YF RFP I +Y+ + K  + +     T+ GR   +D   +    I+    R  +NA
Sbjct: 752 YIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDHIKGNYLREGVNA 810

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
             QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +  
Sbjct: 811 IFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALKLQQEIQRIL-- 867

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                  L+VPL+ +  V+  W E
Sbjct: 868 -NDEVYPLKVPLETSAFVAKRWNE 890


>gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52]
          Length = 889

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 260/985 (26%), Positives = 435/985 (44%), Gaps = 116/985 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 5   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDKKNMPF--- 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 62  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEADDV 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 122 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 177 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 237 ASAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDL-------- 288

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                        EN  + +E     D+                  S+  P+K  +  L+
Sbjct: 289 -------------ENSPLIVENAPTLDSAPA---------------SDNAPKKSCMIVLE 320

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +                    +++KL+   +  F  +   +D    K +A+A    DQ
Sbjct: 321 NPAPLS----------------AFLEKLKKTNARIFMRLA--LDK-EKKVLALAFLLEDQ 361

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K                 +H   IGH++K     L
Sbjct: 362 GYFLPLE-EALFSPFSLEFLQNAFFKML---------------QHACIIGHDLKPLLSFL 405

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHD---IASIAQKWLSYTRKEILKSRKSSIPI 530
             +Y +S+      D  +++++ +  +   D      + ++W+ + + +  K++  +  +
Sbjct: 406 KAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKAGKL 465

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +++             N + +L        + E LL +   ++ P + V+  ME  G +I
Sbjct: 466 EQLDME---------LNALKRLCEYFEKGGLEEGLLALAREVETPFMKVLMGMEFQGFKI 516

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D    K++  E    L  LE  I DL G  FNL+SPKQL +IL+ KL+ P          
Sbjct: 517 DAPYFKRLEQEFKHELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPKNKS------ 570

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T T
Sbjct: 571 HSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTAT 629

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L  
Sbjct: 630 GRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMD 689

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP SEA 
Sbjct: 690 AFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLSEAK 746

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI+ YF RFP I +Y+ + K  + +     T+ GR   +D        I+    R  +N
Sbjct: 747 SYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGVNDHIKGNYLREGVN 805

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A  QGSA+D+ +  M+ V +  +++ L  ++LLQ+HDEL+FE+ E+      Q I   + 
Sbjct: 806 AIFQGSASDLLKLGMLKVSERFKNNPL-VRLLLQVHDELIFEIEEKNAPELQQEIQRIL- 863

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
                   LRVPL+ +  ++  W E
Sbjct: 864 --NDEVYPLRVPLETSAFMAKRWNE 886


>gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
 gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
          Length = 893

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 257/986 (26%), Positives = 441/986 (44%), Gaps = 116/986 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           KE  L L+D  ++++R++Y       L+    G P   + G   M+ K  ++ +      
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSTKNKPLTNDK-GFPTGLLTGLVGMVKKFYKDRKNMPF-- 63

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
                 +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD
Sbjct: 64  -IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEADD 122

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IA+   ++    +   I S DKD  QL+S    L+D   + +  ++  ++K+GI P + 
Sbjct: 123 VIASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLVKDCVEKYGILPSQF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEY 236
              Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++ 
Sbjct: 178 TDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQD 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCD 295
             +A LS++L  L                  N   ++   LK   F   +  +       
Sbjct: 238 KGSAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEN----- 292

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
             +  P++LD                          + L + T   ++      + +   
Sbjct: 293 --SPTPLILDN-------------------------TPLLENTPASDNAPKKSCMIV--- 322

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
                          + NT+ +  ++++LE   +  F  +   +D    K +A+A    D
Sbjct: 323 ---------------LENTEPLSAFLERLENSNARVFMRLV--LDK-EKKVLALAFLFED 364

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           Q      + E +F   S+   Q++  K     +I               IGH++K     
Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNAFFKMLQHAQI---------------IGHDLKPLLSF 408

Query: 476 L-HRYGISMRGFE--DIMLMSYVLDSGRSSHD---IASIAQKWLSYTRKEILKSRKSSIP 529
           L  +Y +S+      D  +++++ +  +   D      + ++ + + + +  K++     
Sbjct: 409 LKAKYQVSLENIRIQDTQILAFLKNPEKVGFDGVLKEYLKEELIPHEKIKDFKTKSKVEK 468

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           ++++             N + +L        + E LL +   ++ P + V+  ME  G +
Sbjct: 469 LEQLDME---------LNALKRLCEYFEKGGLEEGLLALAREVETPFMKVLMGMEFQGFK 519

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID    K++  E    L  LE  I DL G  FNL+SPKQL +IL+ KL+ P         
Sbjct: 520 IDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKS----- 574

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            ++T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T 
Sbjct: 575 -RSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTA 632

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLY 768
           TGRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L 
Sbjct: 633 TGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 692

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA
Sbjct: 693 EAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEA 749

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             YI+ YF RFP I +Y+ + K  + +     T+ GR   +D + +    I+    R  +
Sbjct: 750 KSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGA-NDHIKGNYLREGV 808

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           NA  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +
Sbjct: 809 NAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL 867

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974
                    LRVPL+ +  V+  W E
Sbjct: 868 ---NDEVYPLRVPLETSAFVAKRWNE 890


>gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464]
          Length = 893

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 263/984 (26%), Positives = 437/984 (44%), Gaps = 112/984 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N    K     K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKDLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L+                 N   ++   LK   F   +  +        
Sbjct: 239 ESAFLSKELATLQRGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD          +E     D   K S    L                      
Sbjct: 293 -SPTPLILDN------TPLLENAPLLDNAPKKSCMIVLE--------------------- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT  +  +++KL+   +  F  +   +D    K +A+A    DQ
Sbjct: 325 ----------------NTAPLSAFLEKLKNSNARIFARLV--LDK-EKKVLALAFLYEDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K     +I               IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLQNAFFKMLQHAQI---------------IGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPID 531
             +Y +S+      D  +++++ +  +       + +++L       E +K  K+   ++
Sbjct: 410 KAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVVREYLKEELIPHETIKDFKTKSKVE 467

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           K+    ++ +A++                + E LL +   ++ P++ V+  ME  G +ID
Sbjct: 468 KLEQLDMELNALKRLC------EYFEKGGLEEGLLALARGVETPLMKVLMGMEFQGFKID 521

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
               K++  E    L  LE  I DL G  FNL+SPKQL +IL+ KL+ P          +
Sbjct: 522 APYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKS------R 575

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TG
Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATG 634

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQV 770
           RL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L   
Sbjct: 635 RLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDA 694

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA  
Sbjct: 695 FLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKS 751

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI+ YF RFP I +Y+++ K  + +     T+ GR   +D        I+    R  +NA
Sbjct: 752 YIEAYFKRFPSIKDYLKRMKEEILKTSKAFTLLGRYRVFDFAG-VNDHIKGNYLREGVNA 810

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
             QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +  
Sbjct: 811 IFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALKLQQEIQRIL-- 867

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
                  LRVPL+ +  ++  W E
Sbjct: 868 -NDEVYPLRVPLETSAFMAKRWNE 890


>gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30]
          Length = 893

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 259/985 (26%), Positives = 435/985 (44%), Gaps = 114/985 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMGAKNKPLTNVKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDFAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++ + LK   F   +  +        
Sbjct: 239 ESAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKNELKEYGFISTLRDLEN------ 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD         A+E     D   K S+   L                      
Sbjct: 293 -SPTPLILDN------TPALENTPLLDNAPKKSRMIVLE--------------------- 324

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT  +  +++KL+   +  F  +   +D    K +A+A    DQ
Sbjct: 325 ----------------NTAPLSAFLEKLKKTNARIFMRLA--LDK-EKKVLALAFLLQDQ 365

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K     +I               IGH++K     L
Sbjct: 366 GYFLPLE-EALFSPFSLEFLQNAFFKMLQHAQI---------------IGHDLKPLLSFL 409

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHD---IASIAQKWLSYTRKEILKSRKSSIPI 530
             +Y +S+      D  +++++ +  +   D      + ++W+ + + +  K++  +   
Sbjct: 410 KAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWILHEKIKDFKTKSKAEKS 469

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +++             N + +L        + E L  +   ++ P + V+  ME  G +I
Sbjct: 470 EQLD---------RELNALKRLCEYFEKGGLEEGLFALAREVETPFMKVLMGMEFQGFKI 520

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D    K++  E    L  LE  I +L G  FNL+SPKQL +IL+ KL+ P          
Sbjct: 521 DAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKS------ 574

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T T
Sbjct: 575 HSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTAT 633

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L  
Sbjct: 634 GRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMD 693

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA 
Sbjct: 694 AFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAK 750

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y + YF RFP I +Y+ + K  + +     T+ GR   +D   +    I+    R  +N
Sbjct: 751 SYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYIKGNYLREGVN 809

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   + 
Sbjct: 810 AIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALELQQEIQRIL- 867

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
                   LRVPL+ +  ++  W E
Sbjct: 868 --NDEVYPLRVPLETSAFIAKRWNE 890


>gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
 gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
          Length = 889

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 255/985 (25%), Positives = 435/985 (44%), Gaps = 118/985 (11%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +E  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   REGTLALIDTFAYLFRSYYMSAKNKPLTNVKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIVLFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ+ G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
            +A LS++L  L+                 N   L+     L+    I+ +    +    
Sbjct: 239 GSAFLSKELATLQRGCIKEFDFLSCAFPSENP--LLKIKDELKEYGFISTLRDLENS--- 293

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              P++++     +    ++    +   I     + LS                      
Sbjct: 294 ---PLIVENAPILDNAPILDNAPKKSRLIVLESAAPLS---------------------- 328

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                                 +++KL+   +  F      +     K +A+A    DQ 
Sbjct: 329 ---------------------AFLEKLKNPNARVF---MRLVLNKEKKVLALAFLYEDQG 364

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL- 476
                + E +F   S+   Q++          L  L+      H   +GH++K     L 
Sbjct: 365 YFLPLE-EALFSPFSLEFLQNA---------FLKMLQ------HVQIVGHDLKPLLSFLK 408

Query: 477 HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
            +Y + +      D  +++++ +  +       + +++L          ++  IP +KI 
Sbjct: 409 AKYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL----------KEELIPHEKIK 456

Query: 535 DSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           D + +   +E      N + +L        + E LL + + ++ P + V+  ME  G +I
Sbjct: 457 DFKTKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAKEIETPFMKVLMGMEFQGFKI 516

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D    K++  E    L  LE  I DL G  FNL+SPKQL ++L+ KL+ P          
Sbjct: 517 DAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEVLYEKLELPKNKS------ 570

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T T
Sbjct: 571 HSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTAT 629

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L +
Sbjct: 630 GRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLME 689

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   +  +FG ++   + + R  AK+INF ++YG+   +L+  L I  +EA 
Sbjct: 690 AFLKGRDIHLETSKALFGGDL---AKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEAK 746

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI+ YF RFP I +Y+ + K  + +     T+ GR   +D  N     I+    R  +N
Sbjct: 747 SYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FNGVNDYIKGNYLREGVN 805

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   + 
Sbjct: 806 AIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRIL- 863

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
                   LRVPL+ +  V+N W E
Sbjct: 864 --NDEVYPLRVPLETSAFVANRWNE 886


>gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
          Length = 877

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 213/675 (31%), Positives = 349/675 (51%), Gaps = 46/675 (6%)

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII- 395
           +    N +Q   K   E+L+   +    +     I+    I   +  +E  G  +  II 
Sbjct: 212 EAVYENLDQVSGKKLKEKLETHKEQAFMSKELATIITDAPITVHIDDIEYKGYEAGDIIP 271

Query: 396 ------TDTM---------DAFHSKPIAIAISTLDQKDDTSF--------------KVET 426
                   ++         +A  ++   I+    ++  +                   + 
Sbjct: 272 LFENLGFTSLLNKLGAPSEEAVSAELDDISFEIAEEVTEEMLQQDSAIIVEVQEENYHKA 331

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                 +          T          K+ ++E   K   + K   + L   G+ +RG 
Sbjct: 332 DIQGFGIQNDNGCYFIPTDIALASEAFIKWLKDEEMRKYTFDAKRAIVALKWKGVEIRGV 391

Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKISDSQVQEH 541
           + D+++ +Y+LD   +  D  ++A+   ++      +   K  K ++P  +I    V EH
Sbjct: 392 DFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPAQEI----VAEH 447

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
                +V+  +      +L   +   ++  L+ P+  V++ ME+ G+++D + L+ +  E
Sbjct: 448 VARKVHVLYDVKQTFIDELEKNEQYELFINLEMPLACVLADMEVKGVKVDTERLRNMGDE 507

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++  L  +E+ IY+L+G +FN++SPKQLG +LF KL  P   KTKTG   +T+ D+    
Sbjct: 508 LAGRLKEMEQEIYELAGTEFNINSPKQLGVVLFEKLNLPVIKKTKTGY--STSADVLDKL 565

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              + II  IL +RQL K+ STY + L   ++  + ++HT ++   T TGRL+S EPNLQ
Sbjct: 566 MDHHEIIPKILHYRQLGKLNSTYIEGLLKVVHDESSKIHTRFNQVLTQTGRLSSTEPNLQ 625

Query: 722 NIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+ + G+KIR+AFI       + +ADYSQIELR+LAHIAK   L + F++ +DIH  
Sbjct: 626 NIPIRLEEGRKIRQAFIPSQEGWVMYAADYSQIELRVLAHIAKDKGLIEAFQHDMDIHTK 685

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A ++FGV  ++V+  MRR AK +NF I+YGIS + L+  L I R  A ++I++YF  FP
Sbjct: 686 TAMDVFGVEKDEVTANMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFIEKYFASFP 745

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           G+ EY+++     +Q GYV T+  RR +  EI S   ++R+  ER A+N PIQGSAADI 
Sbjct: 746 GVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNVRSFAERTAMNTPIQGSAADII 805

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AMI +   LE+  L  ++LLQ+HDEL+FEVP+EEI    +++   ME A    I L V
Sbjct: 806 KKAMIVMADRLEEEGLQARLLLQVHDELIFEVPKEEIEKLEKLVPEVMEHA----IELAV 861

Query: 961 PLKVNIKVSNNWQEE 975
           PLKV+      W + 
Sbjct: 862 PLKVDYSYGPTWYDA 876



 Score =  342 bits (876), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 104/294 (35%), Positives = 167/294 (56%), Gaps = 9/294 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + LVDG++  YRAF+A PLL+    G+  NAI GF  ML ++L+  +     +H  V
Sbjct: 2   EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR++ + DYK  R K P  L  Q P +R    AF +P  E++ +EADDI+ T
Sbjct: 57  AFDAGKTTFRHKTFSDYKGGRQKTPPELSEQFPFIRELLDAFRVPRYELEDYEADDIMGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               A ++G  V +IS DKDL+QLVS  T +    K     ++   E + +K+ + P+++
Sbjct: 117 LAKEASEQGAQVKVISGDKDLLQLVSDHTRVCIPRKGITEVDEYTKEALFEKYNLSPKQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD  DNIPG+PG+G KTA  LL ++G +E +  N  ++  KK +E +  + E 
Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENLDQVSGKKLKEKLETHKEQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           A +S++L  + TD PIT+ ++ +  +      +I   + L FT L+N++    +
Sbjct: 237 AFMSKELATIITDAPITVHIDDIEYKGYEAGDIIPLFENLGFTSLLNKLGAPSE 290


>gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519]
 gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii]
          Length = 888

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 201/541 (37%), Positives = 328/541 (60%), Gaps = 11/541 (2%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVL 496
           D    N   K++L  LK  FEN    K G+N+K D L+L  Y I++ G + DI +  Y++
Sbjct: 353 DEEFFNIEEKDVLK-LKDVFENPEIKKYGYNLKNDCLILKPYEINLTGLYFDIAIAEYLI 411

Query: 497 DSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
           DS  S+++I  IA K+      + +E+L   KS      +SD+Q+  +A    +++ +  
Sbjct: 412 DSTSSNYEIKDIALKYNLGDVLSLEELLGKGKSKKDFKDLSDAQISGYACSVLDIVDKGK 471

Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
             L   +    + +++  ++ P++++++ ME  GI  D+++L ++  +    + +LE +I
Sbjct: 472 EALITTIENYNMHNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLEASI 531

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
           Y+ +GE FN++SPKQLG ILF KL  P+  KTKTG   +T  ++ +     +PII  I  
Sbjct: 532 YEYAGENFNINSPKQLGHILFDKLGLPAIKKTKTGY--STNAEVLEALSDKHPIIDKITL 589

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           +RQ +K++STY D L N IN +T R+H+ ++   T TGR++S EPN+QNIP++ ++G+++
Sbjct: 590 YRQYTKLQSTYVDGLLNIINPKTGRIHSSFNQTITTTGRISSTEPNMQNIPVRLEIGREL 649

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R+ F++P    L+ ADYSQIELRILAHIA    L   F    DIH + A+E+F V +++V
Sbjct: 650 RKVFVAPEDMYLVDADYSQIELRILAHIANDEGLIDAFSKGDDIHTITASEVFNVPLDEV 709

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           + ++R  AK +NF I+YGIS F L+  L I +  A +YI  YF R+P + +Y+E      
Sbjct: 710 TKELRSAAKAVNFGIVYGISDFGLSNNLGISKQVAKEYIDNYFARYPYVKKYMEDIVEKA 769

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           + +GYVET  GRR +  E+ S    ++N+ +R A+N PIQGSAAD+ + AM+ V+  L+ 
Sbjct: 770 KNDGYVETYIGRRRYIPELGSNNFIMKNLGKRLAMNTPIQGSAADVIKIAMVKVYARLKS 829

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             L +K++LQ+HDEL+ E P+ E +  + ++   ME A    ++L V L V+ K   +W 
Sbjct: 830 EGLKSKLILQVHDELIIESPDSEKSYVADLLKEEMESA----VDLNVKLTVDAKWGKSWY 885

Query: 974 E 974
           E
Sbjct: 886 E 886



 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 171/311 (54%), Gaps = 10/311 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG+S + RA+YA P L  K  G   NAI GF N+L+K++   +     SH +V
Sbjct: 13  DKLLILIDGNSLMNRAYYALPELMNKK-GQHTNAIYGFANILFKIMDTYK----PSHISV 67

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++ Y  YK NR K+P+ L  Q+  ++    AFGI  IE++G+EADD+I T
Sbjct: 68  AFDLKAPTFRHKQYDAYKGNRKKMPDELREQVEPLKKMIDAFGINRIELEGYEADDLIGT 127

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                E++GF V II+ DKD +QLVS    +  T K     ++ D + + +K+ + P++ 
Sbjct: 128 VAKNFEQDGFEVYIITGDKDALQLVSDKIKVLFTKKGISELDEYDPDKMTEKYELTPQQF 187

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+ L GD  DNIPG+ GIG KT   LL+EYG++ENI +N   I  K  +  +    + 
Sbjct: 188 IDLKGLMGDQSDNIPGVAGIGEKTGIKLLKEYGSIENIYMNIDEI-SKSVKAKLEAGYDM 246

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS+ L  +  D+P+ + ++    +D +   LIS     EF  LI +V          +
Sbjct: 247 AFLSKSLATIMVDIPLELKVDEFEKKDIDKNTLISLFSEFEFNSLIGKVGNDESGLIDKV 306

Query: 300 EPVVLDINTTE 310
           +   L  N  E
Sbjct: 307 QKEYLISNDIE 317


>gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 875

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 235/666 (35%), Positives = 369/666 (55%), Gaps = 30/666 (4%)

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP------INNDSYTKIVNTK 375
           ++  ++  + + LS + + IN E +P +  +E  +            +    +T ++   
Sbjct: 227 KEKVLENKELAILSKELATINVE-SPIECTIESTKYDGYQTEKVIPLLKEMQFTTLLKNI 285

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
           +     ++ + +   +F ++T+  +   S   A+ +   ++   T       FI L++H+
Sbjct: 286 EGDT-PEEAKELKELTFDVLTELTEKHFSGKTALYVELENENYHTGN-----FIGLTIHS 339

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSY 494
            + +      T E     K++ E++   K+ ++ K   + +HR G ++ G   DIML SY
Sbjct: 340 DKGTYFFTKETAENSPAFKEWIESDAS-KVVYDAKKTMVAMHRLGYAVSGITFDIMLASY 398

Query: 495 VLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           +L+   S  D  S+A +      +       K  K S P +++    V  H    +  I 
Sbjct: 399 LLNPSDSIADFTSVAIRHDYTEVETDEAVYGKGAKRSTPEERV----VAPHLARKAVAIA 454

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ +  E++  L +LE
Sbjct: 455 VLEKRLLDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLE 514

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           E+I+ L+GE+FN++SPKQLG ILF KL  P+  KTKTG   +TA D+ +   G + II  
Sbjct: 515 ESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADVLESLSGKHAIIDE 572

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G
Sbjct: 573 ILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEG 632

Query: 731 QKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           +KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V 
Sbjct: 633 RKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVE 692

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
            E+V   MRR AK +NF I+YGIS + L+  L I R +A D+I RYF  +P + EY++  
Sbjct: 693 KEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMQDI 752

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
             F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI +  
Sbjct: 753 VRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSD 812

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            L+  KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L VPLKV+    
Sbjct: 813 RLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFG 868

Query: 970 NNWQEE 975
           + W + 
Sbjct: 869 DTWYDA 874



 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 220/470 (46%), Gaps = 24/470 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHATFKGYKGGRQKTPSELSEQFPFIRELLAAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + P +++
Sbjct: 117 TKKAEADGLEVAIITGDRDLTQLASDKTTVYITKKGIADMETNTPETLKEKYNLTPAQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+ G++E++L +A  I  KK +E +LE  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGSVESVLEHADEISGKKLKEKVLENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  + PI   +E    +     ++I  LK ++FT L+  +      +A  +
Sbjct: 237 AILSKELATINVESPIECTIESTKYDGYQTEKVIPLLKEMQFTTLLKNIEGDTPEEAKEL 296

Query: 300 EPVVLDI-NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           + +  D+      K  + +T +  +   +     +    T   +                
Sbjct: 297 KELTFDVLTELTEKHFSGKTALYVELENENYHTGNFIGLTIHSDKGTYFFTKETAENSPA 356

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKL-ETIGSASFKII--------TDTMDAFHSKPIAI 409
            +  I +D+   + + K     + +L   +   +F I+        +D++  F S  I  
Sbjct: 357 FKEWIESDASKVVYDAKKTMVAMHRLGYAVSGITFDIMLASYLLNPSDSIADFTSVAIRH 416

Query: 410 AISTLDQKDDTSFKVETIFID----LSVHTSQDSTGKNTLTKEILSYLKK 455
             + ++  +    K           ++ H ++ +     L K +L  L+K
Sbjct: 417 DYTEVETDEAVYGKGAKRSTPEERVVAPHLARKAVAIAVLEKRLLDDLEK 466


>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
 gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
          Length = 861

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 253/976 (25%), Positives = 425/976 (43%), Gaps = 127/976 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   LFL+DG +FIYR FYA P   R  DG P +A+     ++ +LL+        SH  
Sbjct: 10  KTEPLFLIDGHAFIYRGFYAYPDFKR-SDGFPTSAMYIVFKLVLRLLREEN----PSHLV 64

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            + D  A TFR+E+ P YKANRP++PE L  QL  ++   +  GI  +E +G EADD IA
Sbjct: 65  FVTDGRAPTFRHELLPTYKANRPRMPEGLAAQLEPLKAGLRLLGIRVLEAEGGEADDCIA 124

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +     ++E  +V I+  DKDL Q +     ++D  + +        +K  +  E  V  
Sbjct: 125 SLAGRFKEE-RSVVIVGADKDLRQCLDENVVMWDPAQGK--------EKL-VTREGFVEE 174

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L  D   +   +               G+  + +    ++  K              L
Sbjct: 175 TGLQPDQWADFQAMT--------------GDAADNIPGIPKVGPKTA---------MGFL 211

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNG--PRLISFLKALEFTKLINRVATTYDCDAANIE 300
            R             P   L+ ++ +    +  + L        + R  TT   D    E
Sbjct: 212 RR------------FPSLDLLKKNFDRLTAKEQTLLSPHMEQVFVYRKLTTLRTDMC-TE 258

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
             + D+   E  G A++   + +     S+F +L+ +  +  +    ++  +       +
Sbjct: 259 FGLDDLAVGEVDGGALDFFKEYEFRSLLSEFQALARKNGRAKASGAQEQAAVAAPVPDGE 318

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
                      +  +                       ++    K + +       + + 
Sbjct: 319 QTSGPVRVEPRLAPR-----------------------LEPMAGKDVGLY-----AEGEK 350

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
                     L +  + D     T  +  ++  K   E       G              
Sbjct: 351 WILGTDAEELLFMGAASDLCRALTGARVYVTSYKSVLEQGRLDLSGC------------- 397

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  DI L +Y+L     ++ +  I                      D + D  +  
Sbjct: 398 ---AEIFDIELAAYLLSPEERNYSLERIR---------------------DGLGDE-IDV 432

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           H   +   +L +  LL  +L   +LL + + L+ P+ +V+ +M+  GI+ID         
Sbjct: 433 HRENHGQAVLAVGRLLHARLAGSELLGLLQDLELPLTEVLVRMQKRGIRIDAARFHDFLG 492

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            +   L  L   I++ +GE+FN+ S +QL ++LF++L      KT  G   T++  LE +
Sbjct: 493 MVQAELDRLTRTIHEQAGEEFNIRSSQQLAEVLFSRLGLACKQKTPGGAQSTSSSVLEGL 552

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              ++PI+ ++LE+R   K++STY + +P   + +  R+HT ++  +T TGRL+S  PNL
Sbjct: 553 AA-EHPIVADVLEFRMYEKLRSTYLEPMPQLAD-KNGRIHTTFNQLATATGRLSSSNPNL 610

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIPI+  LG ++R  F++ P  +L++ADYSQIELR+LAH++    L + F    DIH  
Sbjct: 611 QNIPIRGALGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHAR 670

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A  +F  +  +VS   RR AKTINF ++YG+ P +L  +L I   EA ++I  YF +  
Sbjct: 671 TAGILF--DTTEVSADERRKAKTINFGLLYGMGPQKLGRELGISLKEAKEFIAVYFSKLS 728

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + E+ E+ +   +  GYV T+ GRR    EINS  +++     R AIN  +QGSAADI 
Sbjct: 729 RVREFYEEIEAGAKSLGYVTTLAGRRRMLPEINSRNTNMAQQARRMAINTVVQGSAADII 788

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           ++AM+ V KS    +L   ++LQIHDEL+ E P        + +   M        +L V
Sbjct: 789 KKAMLEVDKSPVIGELGASLILQIHDELLLEAPAARAREVGEAVAGIMASV----YSLSV 844

Query: 961 PLKVNIKVSNNWQEEN 976
           PL V+  V ++W   +
Sbjct: 845 PLVVDWGVGDDWSAAH 860


>gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816]
          Length = 694

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 229/600 (38%), Positives = 344/600 (57%), Gaps = 22/600 (3%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           ++ + +   SF+I+T+  +       A+ +   +            FI L+VH+SQ +  
Sbjct: 110 EETKELKELSFEIVTELKEKHFGGKTALYVELENDN-----YHTANFIGLTVHSSQGTYF 164

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR 500
               T E     +K+ E++   K+ ++ K   + ++R G+++ G   DIML SY+L+   
Sbjct: 165 FTKETAESSEVFRKWVESDQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSD 223

Query: 501 SSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           S  D  S+A +      +       K  K S P + I    V  H    +  I  L   L
Sbjct: 224 SIDDFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESI----VAAHLARKAVAIADLEKRL 279

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
              L   + L + E L+ P+  V+++ME+ G+ +D + L+ +  E++  L +LEE+I+ L
Sbjct: 280 VDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 339

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +GE+FN++SPKQLG ILF KL  P+  KTKTG   +TA D+ +   G + II  IL +RQ
Sbjct: 340 AGEEFNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADVLESLSGKHAIIDEILLYRQ 397

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L KI+STY + L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR+ 
Sbjct: 398 LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQV 457

Query: 737 FISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V  
Sbjct: 458 FVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDS 517

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++
Sbjct: 518 LMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE 577

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L   K
Sbjct: 578 KGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEK 637

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W + 
Sbjct: 638 LEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTWYDA 693



 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 15/297 (5%)

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYG-NLENILINASRIKQKKRRENILEYAETARLSR 244
            GDS DNIPGIPG+G KTA  LL E+G  +E++L +A  I  KK +E +LE  E A LS+
Sbjct: 1   MGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKELAILSK 60

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           +L  +  D PI   +E    +     ++I  LK + FT L+  +      +   ++ +  
Sbjct: 61  ELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEETKELKELSF 120

Query: 305 DI-NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           +I    + K    +T +  +        ++    T  ++S Q       E  +    +  
Sbjct: 121 EIVTELKEKHFGGKTALYVELENDNYHTANFIGLT--VHSSQGTYFFTKETAESSEVFRK 178

Query: 364 NNDSYTKIVNTKDIQQWVQKLE---TIGSASFKII--------TDTMDAFHSKPIAIAIS 412
             +S    V     +  V        I   +F I+        +D++D F S  I    +
Sbjct: 179 WVESDQTKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVAIRHDYT 238

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
            ++  +    K            +     K     ++   L    E    L +  ++
Sbjct: 239 EVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDDLEENEQLALMEDL 295


>gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023]
          Length = 552

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 224/559 (40%), Positives = 327/559 (58%), Gaps = 17/559 (3%)

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                FI L+VH+SQ +      T E  +  + + E+E   K+ ++ K   + ++R G +
Sbjct: 4   YHTANFIGLTVHSSQGTYFFTKETAEKSAVFRDWVESEE-TKVVYDAKKTMVAMNRIGFA 62

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQ 537
           ++G   DIML SY+L+   S  D  S+A +      +       K  K S P + I    
Sbjct: 63  IKGVTFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAIYGKGAKRSTPEEDI---- 118

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V  H    +  I +L   L   L   + L + E L+ P+  V++QME+ G+ +D   L  
Sbjct: 119 VAAHLARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTQRLGN 178

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  E++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG   +TA D+
Sbjct: 179 MKVELAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTGY--STAADV 236

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +   G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++
Sbjct: 237 LESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVD 296

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  D
Sbjct: 297 PNLQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYD 356

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF
Sbjct: 357 IHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYF 416

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSA
Sbjct: 417 VSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSA 476

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI ++AMI + + L+   L  K+LLQ+HDEL+FE PE EI    +I+   ME A    +
Sbjct: 477 ADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----V 532

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L VPLKV+    + W + 
Sbjct: 533 ELSVPLKVDSAFGDTWYDA 551


>gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067]
          Length = 566

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 222/559 (39%), Positives = 325/559 (58%), Gaps = 17/559 (3%)

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                FI L++H+ + +      T E     K++ E++   K+ ++ K   + +HR G +
Sbjct: 18  YHTANFIGLTIHSDKGTYFFTKETAENSPAFKEWVESDAS-KVVYDAKKTMVAMHRLGYA 76

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQ 537
           + G   DIML SY+L+   S  D  S+A +      +       K  K S P + +    
Sbjct: 77  VSGITFDIMLASYLLNPSDSIADFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESV---- 132

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V  H    +  I  L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ 
Sbjct: 133 VAPHLARKAVAIAVLEKRLLDDLEKNEQLSLMEDLELPLTFVLAQMEMQGVSVDTKRLED 192

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  E++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL  P+  KTKTG   +TA D+
Sbjct: 193 MKVELAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADV 250

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +   G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++
Sbjct: 251 LESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVD 310

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  D
Sbjct: 311 PNLQNIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYD 370

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R +A D+I RYF
Sbjct: 371 IHTKTAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYF 430

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSA
Sbjct: 431 VSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSA 490

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI ++AMI +   L+  KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    +
Sbjct: 491 ADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----V 546

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L VPLKV+    + W + 
Sbjct: 547 ELSVPLKVDSAFGDTWYDA 565


>gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2]
 gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2]
          Length = 881

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 248/799 (31%), Positives = 394/799 (49%), Gaps = 47/799 (5%)

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS--RKLVMLRTD-VPITIPLEH 261
             L  +Y  L+N    A  I     ++   E  +   LS  R L  L TD V + I ++ 
Sbjct: 101 TALGVQYYELDN-YE-ADDIIGTLAQKVDKEQFDVVVLSGDRDLTQLATDHVKVDITVKG 158

Query: 262 L-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEI 320
           +  +E      +      L   ++I+        DA++  P V  I       +  E   
Sbjct: 159 VSEIESYTPDHVAEKYDGLAPLQIID--MKGLAGDASDNIPGVTKIGEKTAIKLLKEYGS 216

Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTP---QKLFLERLQKLSQYPINNDSYT-------- 369
                    +      + + +N ++T    +KL    +       I++  Y         
Sbjct: 217 VEGIYEHIDEMKPSKMKENLLNDKETAFLSKKLATIDVDAPVDVAIDSLKYEGKDLDKLI 276

Query: 370 KIVNTKDIQQWVQKL------ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                 +   +++KL      E +    F ++T+      ++ +A+    ++   D    
Sbjct: 277 PFYQEMNFNSFLEKLNVVTEPEEMEDILFDVVTEVTPEMFTEDMAL---YIEMLGDNYHL 333

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            + + +          T ++ L +    Y   + +N    K  ++ K   + L+RY  + 
Sbjct: 334 EDIVGVAWGNQQKIYVTNQDDLFEN--EYFIAWLKNASSQKKVYDAKRTYVALNRYAAAP 391

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKISDSQV 538
           +G   D +L +Y+LD+  S++DIA +A+ +  Y          K  K  +P D+      
Sbjct: 392 QGIVFDTLLAAYLLDTNDSNNDIAGVAKHYGFYAIQSDEAIYGKGVKRGLPADE---EVF 448

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
             H       I  L + L  +L  +    ++  ++ P+  ++++MEITGI++D   L Q+
Sbjct: 449 FAHLARKVAAINYLSVRLAKELAEKNQTALFTDMELPLSKILAEMEITGIRVDASRLHQM 508

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             E ++ L  +E+ IY  +GE+FNL+SPKQLG ILF K+  P   KTKTG   +TA D+ 
Sbjct: 509 KGEFAERLHEIEQKIYQEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKTGY--STAVDVL 566

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +      PI+++IL +RQ++KI+STY + L   I    + VHT Y    T TGRL+S++P
Sbjct: 567 EQLKEQAPIVEDILIYRQIAKIQSTYVEGLLKVIQGDGK-VHTRYVQTLTQTGRLSSVDP 625

Query: 719 NLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           NLQNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+    L   F    DI
Sbjct: 626 NLQNIPIRLEEGRKIREAFVPRAKDWVIYSSDYSQIELRVLAHISNDEHLKAAFVEGQDI 685

Query: 778 HRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           H   A  +FG++  E+V+P MRR AK +NF I+YGIS + L+  L I R  A  YI  YF
Sbjct: 686 HSSTAMRVFGISTPEEVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAQQYIDTYF 745

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            ++PG+  Y+E+     +  GYVET++ RR +  +INS   ++R   ER AIN PIQGSA
Sbjct: 746 EKYPGVKTYMEEVVREAKDKGYVETLYHRRRYLPDINSRNFNLRTFAERTAINTPIQGSA 805

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI + + L++ KL   MLLQ+HDELVFEVPE+E+     ++   ME A    +
Sbjct: 806 ADILKIAMIDLDRRLKEEKLQATMLLQVHDELVFEVPEDELERLDALVKEVMENA----V 861

Query: 957 NLRVPLKVNIKVSNNWQEE 975
           +L VPL  +      W E 
Sbjct: 862 SLHVPLLTDSNWGKTWYEA 880



 Score =  324 bits (831), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 161/304 (52%), Gaps = 13/304 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        + ++GL  NAI  F  M   ++   +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNNNGLHTNAIYAFHTMFENVMAKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR  +Y +YK  R K P     Q+P +R    A G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTAMYEEYKGGRSKTPGEFKEQMPYIRELITALGVQYYELDNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +KE F V ++S D+DL QL +    +  TVK     E    +HV +K+ 
Sbjct: 116 DDIIGTLAQKVDKEQFDVVVLSGDRDLTQLATDHVKVDITVKGVSEIESYTPDHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P +++ ++ L GD+ DNIPG+  IG KTA  LL+EYG++E I  +   +K  K +EN
Sbjct: 176 GLAPLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKPSKMKEN 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           +L   ETA LS+KL  +  D P+ + ++ L  E  +  +LI F + + F   + ++    
Sbjct: 236 LLNDKETAFLSKKLATIDVDAPVDVAIDSLKYEGKDLDKLIPFYQEMNFNSFLEKLNVVT 295

Query: 293 DCDA 296
           + + 
Sbjct: 296 EPEE 299


>gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378]
          Length = 552

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 223/559 (39%), Positives = 327/559 (58%), Gaps = 17/559 (3%)

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                FI L+VH+SQ +      T E     + + E++   K+ ++ K   + ++R G +
Sbjct: 4   YHTANFIGLTVHSSQGTYFFTKETAEKSVVFRNWVESDE-TKVVYDAKKTMVAMNRIGFA 62

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQ 537
           ++G   DIML SY+L+   S  D  S+A +      +       K  K S P + I    
Sbjct: 63  IKGVTFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAIYGKGAKRSTPEENI---- 118

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V  H    +  I +L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ 
Sbjct: 119 VAAHLARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLEN 178

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  E++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL+ P   KTKTG   +TA D+
Sbjct: 179 MKVELAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTGY--STAADV 236

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +   G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++
Sbjct: 237 LESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVD 296

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  D
Sbjct: 297 PNLQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYD 356

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A ++F V  ++V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF
Sbjct: 357 IHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYF 416

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSA
Sbjct: 417 VSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSA 476

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI ++AMI + + L+   L  K+LLQ+HDEL+FE PE EI    +I+   ME A    +
Sbjct: 477 ADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----V 532

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L VPLKV+    + W + 
Sbjct: 533 ELSVPLKVDSAFGDTWYDA 551


>gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171]
          Length = 567

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 222/559 (39%), Positives = 324/559 (57%), Gaps = 17/559 (3%)

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                FI L++H+ + +      T E     K++ E++   K+ ++ K   + +HR G +
Sbjct: 19  YHTANFIGLTIHSDKGTYFFTKETAENSPAFKEWVESDAS-KVVYDAKKTMVAMHRLGYT 77

Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQ 537
           + G   DIML SY+L+   S  D  S+A +      +       K  K S P + I    
Sbjct: 78  VSGITFDIMLASYLLNPSDSIADFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESI---- 133

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V  H    +  I  L   L   L   + L + E L+ P+  V++QME+ G+ +D   L+ 
Sbjct: 134 VAPHLARKAVAIAVLEKRLLDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLED 193

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  E++  L +LEE+I+ L+GE+FN++SPKQLG ILF KL  P+  KTKTG   +TA D+
Sbjct: 194 MKVELAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADV 251

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            +   G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++
Sbjct: 252 LESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVD 311

Query: 718 PNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  D
Sbjct: 312 PNLQNIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYD 371

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R +A D+I RYF
Sbjct: 372 IHTKTAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYF 431

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             +P + EY++    F ++ GY ETI  RR +  EI S   ++R   ER A+N PIQGSA
Sbjct: 432 VSYPAVKEYMQDIVRFAKEKGYXETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSA 491

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI ++AMI +   L+  KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    +
Sbjct: 492 ADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----V 547

Query: 957 NLRVPLKVNIKVSNNWQEE 975
            L VPLKV+    + W + 
Sbjct: 548 ELSVPLKVDSAFGDTWYDA 566


>gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208]
          Length = 531

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 217/536 (40%), Positives = 318/536 (59%), Gaps = 17/536 (3%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHD 504
           T E     +++ E+E   K+ ++ K   + ++R G+++ G   DIML SY+L+   S  D
Sbjct: 6   TAENSEAFREWVESEQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDD 64

Query: 505 IASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             S+A +      +       K  K S P + I    V  H    +  I  L   L   L
Sbjct: 65  FTSVAVRHDYTEVETDEAVYGKGAKRSTPEESI----VASHLARKAVAIADLEKRLVADL 120

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
              + L + E L+ P+  V+++ME+ G+ +D + L+ +  E++  L +LEE+I+ L+GE+
Sbjct: 121 EENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEE 180

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN++SPKQLG ILF KL  P+  KTKTG   +TA D+ +   G + II  IL +RQL KI
Sbjct: 181 FNINSPKQLGVILFEKLGLPAVKKTKTGY--STAADVLESLSGKHAIIDEILLYRQLGKI 238

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           +STY + L    +K T +VHT ++   T TGRL+S++PNLQNIPI+ + G+KIR+ F+  
Sbjct: 239 QSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPS 298

Query: 741 -PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V   MRR
Sbjct: 299 KPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRR 358

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++ GYV
Sbjct: 359 QAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYV 418

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ETI  RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L   KL  K
Sbjct: 419 ETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAK 478

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +LLQ+HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W + 
Sbjct: 479 LLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTWYDA 530


>gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 485

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/458 (50%), Positives = 325/458 (70%)

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           ++  + ++ +  ++++  +   +A E+++V L+LW +++P+L+ E+ + VYE L++P++ 
Sbjct: 28  DVAGTGRNKVTFERVAIDKATAYAAEDADVTLRLWRMMKPRLVAERRVTVYETLERPLVP 87

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME  GI+ID+++L ++S + S+ L  LEE I + +GEKF +SSPKQ+GD+LF KL 
Sbjct: 88  VLARMERAGIRIDRNMLSRLSGDFSQILARLEEEIQEDAGEKFQVSSPKQIGDVLFGKLG 147

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   KT +GQW T A  LE++    + + K IL WRQL+K+KSTY DSL  H ++ T R
Sbjct: 148 LPGAKKTPSGQWATPATLLEELAQAGHELPKKILNWRQLAKLKSTYTDSLQEHADRETNR 207

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           VHT +SLA+T TGRL+S EPNLQNIPI+T+ G++IRRAF++P  KKLISADYSQIELR+L
Sbjct: 208 VHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLL 267

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AHIA I  L + FE  LDIH   A+ +FGV +++++  +RR AKTINF IIYGIS F LA
Sbjct: 268 AHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFGIIYGISAFGLA 327

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L I R EA+ +IK+YF RFPGI +YI+ TK   R+ GYV T+FGR  HY +I S   S
Sbjct: 328 DRLGIGREEASAFIKQYFERFPGIRDYIDTTKKSCREKGYVTTLFGRVCHYPQIRSNNPS 387

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R   ER AINAPIQG+AADI RRAM  +  +LE  +L  +MLLQ+HDELVFEVP++E+ 
Sbjct: 388 ERASVERQAINAPIQGTAADIIRRAMTRMEAALEAKRLTARMLLQVHDELVFEVPDDEVE 447

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
               +I   ME+A  P + L VPL V  + + NW+E +
Sbjct: 448 ATIPVIAEVMEQAPAPALTLSVPLVVEARAAGNWEEAH 485


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 221/531 (41%), Positives = 319/531 (60%), Gaps = 23/531 (4%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSS 502
           T   E +S LK    +    K   N K   + L ++ I + G   D +L  Y+L      
Sbjct: 352 TDINEAISILKPILTDISVKKYILNSKECTVFLKKHDIELEGLVFDPLLAYYLLKPSGKL 411

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +  +  + LS +  E +K     +                  + I +L   + PKL  
Sbjct: 412 PGLRDLLDQELSLSLPEDIKEDNLYLVF---------------MDNIFKLAEGMVPKLED 456

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +L+ ++  ++ P+I V++++E  GI++D + L+ +S +  + L  LE  I++L+GEKFN
Sbjct: 457 MELIELFNDIEIPLITVLAELEYNGIKVDAEYLESLSRKWEEELNGLESKIHELAGEKFN 516

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG ILF KL  P   KTKTG + T A+ LE++    +PII  I E+RQL K+KS
Sbjct: 517 INSPKQLGGILFEKLGLPVIKKTKTG-YSTGAKVLEKLE-DKHPIIPLISEYRQLMKLKS 574

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-P 741
           TY D+LP  IN  T R+HT ++   T TGRL+S EPNLQNIP++TD G++IRRAFI+   
Sbjct: 575 TYVDALPPMINPDTGRLHTSFNQMVTATGRLSSTEPNLQNIPVRTDEGREIRRAFITENE 634

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L++ADYSQIELR+LAHI+    L   F    DIH   A+E+F V  ++V+P MRRHA
Sbjct: 635 DWVLLAADYSQIELRVLAHISDDEGLKAAFNTGQDIHTQTASEVFEVEPDEVTPNMRRHA 694

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K INF I YG+SP+ LA  L I R EA+DYI +YF RF G+ +Y+E+     +  GYV T
Sbjct: 695 KVINFGIAYGMSPYGLARDLGISRQEASDYINKYFERFTGVKDYMERVVTEAKTKGYVTT 754

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           IF RR +  EINS     R+  ER AIN PIQG+AADI + AMI V+  L+++    ++L
Sbjct: 755 IFNRRRYIPEINSRNYHRRSFAERTAINTPIQGTAADIMKLAMIKVYNRLKENGSPARIL 814

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           LQ+HDEL+ EVP E++T  ++I+   MEKA    ++++VPL VN++   NW
Sbjct: 815 LQVHDELILEVPREDLTEMARIVKSEMEKA----VDMKVPLVVNLESGPNW 861



 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 186/312 (59%), Gaps = 9/312 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L+L+DG S  +RAFYA PLLS    G   NA+ GF  ML KLL   + +      AV
Sbjct: 2   KKKLYLLDGQSLAHRAFYALPLLSTSR-GEYTNAVFGFTRMLLKLLDEEKPDL----IAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR++ Y +YKA+R K+PE L PQL L++   ++F IP IEI+GFEADDII T
Sbjct: 57  AFDKKAPTFRHKEYKEYKAHRKKMPEELKPQLSLIKEVLKSFSIPIIEIEGFEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                E+EGF V I++ D+D +QLV+    +  T +      + D+  V +++ + P+++
Sbjct: 117 MARKGEEEGFEVVIVTGDRDALQLVTEDVSVMYTKRGISDIVRYDLNKVRERYELEPQQL 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GDS DNIPG+PGIG KTA  LL+E+ +LE IL N  ++  KKR+EN+ +YA+ 
Sbjct: 177 IDMKGLMGDSSDNIPGVPGIGEKTAIKLLKEFSSLEEILDNIDKVSGKKRKENLQKYADQ 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           ARLS++L  ++ DVP+ + L+   L   +   +    + LEF  L+NR          +I
Sbjct: 237 ARLSKRLGEIKVDVPLDVELDECHLGKFHKKNIRELFERLEFASLLNRFKEKTSISIDDI 296

Query: 300 EPVVLDINTTEN 311
               LD    EN
Sbjct: 297 SVKELDRKGLEN 308


>gi|225388911|ref|ZP_03758635.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
 gi|225045020|gb|EEG55266.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
          Length = 711

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 211/769 (27%), Positives = 370/769 (48%), Gaps = 72/769 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L+  +    A H AV 
Sbjct: 2   DKLVLIDGHSILNRAFYGVPDLTN-SEGLHTNAVYGFLNIMFKILEEEK----ADHLAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+++Y  YK  R  +PE L  Q+ L++    A G+P + + G+EADDI+ T 
Sbjct: 57  FDLKEPTFRHQMYEAYKGTRKPMPEELHEQVALMKEVLTAMGVPILTLPGYEADDILGTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEK 178
              ++KEG  V+++S D+DL+QL      +                 E V +++ + P +
Sbjct: 117 AKRSQKEGIQVSVVSGDRDLLQLADEHIKIRIPKTSRGGTEVHDYYPEDVKREYQVTPAE 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GDS DNIPG+P IG KTA  ++  YG++EN   +   I+  + ++ + E+ +
Sbjct: 177 FIDVKALMGDSSDNIPGVPSIGEKTATAIISAYGSIENAYAHLEEIRPPRAKKALEEHYD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A++S++L  +  D P+        +E+   P    ++K LEF  ++ R           
Sbjct: 237 MAQMSKELATICLDCPVAFEYGKTQIENLYTPEAYQYMKRLEFKSILTRFDA-------- 288

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                                     ++   + SSL D    +  +   ++LF +  +  
Sbjct: 289 -------------------------ASMGGGETSSLEDGFRLVTEKAEAERLFAKAAK-- 321

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            Q  +     T   +       +++L    S SF      + +       +         
Sbjct: 322 -QPVVGVQLITASRSAARAAGEMEQL----SFSFD-EGGALQSGEKAKEGL-------LP 368

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             +  +     D+    +     +  L + I + L+             ++K     L  
Sbjct: 369 VAAAALCAGEEDICCIVTGGELTEVWLLERISALLQGLTGGAGA--WVLDLKEQ---LPY 423

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKIS 534
             I   G   D  +  Y+L+  + S+    +A+ +L  T   R ++L   +S      + 
Sbjct: 424 LDIPYDGPVFDAGVAGYLLNPLKDSYGYDDLARDFLGLTVPSRADLLGK-QSLGDALWMK 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           D +    A     V ++    L  +L    +  ++  ++ P+I  +S ME  G++++++ 
Sbjct: 483 DPKAVSCACYMGYVAMKAAAPLTERLKQTGMYQLFIEIEMPLIYSLSSMEQAGVKVEREE 542

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           LK+  + +   +  LE+ IY  +G++FN++SPKQLG+ILF  +  P G KTKTG   +TA
Sbjct: 543 LKEYGSRLKVQIDVLEQEIYRDTGKEFNINSPKQLGEILFGDMALPGGKKTKTGY--STA 600

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            D+ +    D P+++ IL++RQL+K+ STYA+ L   I     R+H  ++   T TGR++
Sbjct: 601 ADVLEKLAPDYPVVQKILDYRQLTKLYSTYAEGLAAFIGSDG-RIHGKFNQTITATGRIS 659

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           S EPNLQNIP++ +LG++IR+ F+       + ADYSQIELRILAH++ 
Sbjct: 660 STEPNLQNIPVRMELGREIRKVFVPREGSVFVDADYSQIELRILAHMSG 708


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 198/574 (34%), Positives = 309/574 (53%), Gaps = 22/574 (3%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + ++           +   ++                 +E    L+    +    K  H+
Sbjct: 342 VGLALAGGGRAFYLPLRHQYLGAPA---------QLSAEEAAGALRPLL-SGELPKHAHD 391

Query: 469 IKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKSRK 525
            K  +  L + G+++ G   D  L S +L   R  H +A +A++ +     R        
Sbjct: 392 RKGVQHALAQLGLALGGPGADTDLASRLLLPTRREHALADVARERIGCELPRDPSGGDAA 451

Query: 526 SS---IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                +P++ +   +V E A + +  +L L   L   L  E LL +Y  +++P++ V+ +
Sbjct: 452 RKSERVPVEGLEVERVGEWAAQCAASLLDLAPALERALESEGLLPLYRDVERPLVPVLCE 511

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  GI +D+  ++ +SAE  + +  LE  I+  +G  FN++S ++L  +LFT+L  P  
Sbjct: 512 MERAGILVDRAAMEGMSAEFGRTMQDLEARIHAAAGHPFNIASTRELAQVLFTELALPVL 571

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            + KTG   +T QD+ +     + + + +LE R L+K+K TY D+LP  ++ R  R+HT 
Sbjct: 572 KRLKTG--PSTDQDVLEKLAEQHELPRLVLEHRALAKLKGTYVDALPQLVDPRDGRIHTT 629

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           +  A   TGRL+S +PNLQNIP++T+L ++IR AF++PP  +L+SADYSQIELRILAH +
Sbjct: 630 FHQAGAATGRLSSSDPNLQNIPVRTELSRRIRAAFVAPPGWRLLSADYSQIELRILAHYS 689

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               L + F    D+H   AAE FGV   +V+  MRR AK +NF I YG+S F L+ +L 
Sbjct: 690 DDPALLEAFRLREDVHTRTAAETFGVATGEVTSDMRRIAKVLNFGIAYGLSAFGLSQRLD 749

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +P +EA   I RYF R+ G+  Y+EK     R  G   T+FGR     EI +   ++RN 
Sbjct: 750 LPGAEAQGIIDRYFARYAGVRRYVEKAVEDARATGESRTLFGRARAMPEIAARNPALRNA 809

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ER AIN PIQG+AADI + AMI VH +L       ++LLQ+HDELV EVPE+E+     
Sbjct: 810 AERTAINTPIQGTAADIVKVAMIRVHDALAGDARRARLLLQVHDELVLEVPEDELAPVEA 869

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ++   M  A      L+VPL V + V ++W E +
Sbjct: 870 LVRREMGGAA----QLKVPLDVEVGVGHSWAEAH 899



 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 111/297 (37%), Positives = 160/297 (53%), Gaps = 16/297 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DGS F++RA++A P LS    G P NA+ GF  ML K L+    E   +H  ++
Sbjct: 2   PTLTLIDGSGFVFRAYHAIPHLSTTR-GTPTNAVYGFTTMLLKALR----EHAPTHVVLV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    +FRNEI P YKANRP+ P+ L  Q PLVR    A  +P IE  G EADD+IAT 
Sbjct: 57  MDAGRKSFRNEIDPAYKANRPEAPDDLQVQFPLVREVADALAVPRIEEPGVEADDVIATL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-----KEEKIDIEHVIKKWGIPPEKM 179
              A ++G+ V +++ DKD  QLV     LYD +     +        V KK G+ P+++
Sbjct: 117 ASRAREQGWEVVVVTGDKDFGQLVDERLSLYDPMAEASGRGGWTGPGEVEKKLGVRPDQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENI 233
           +   A+ GD IDN+PGIPGIG  TAA L++ +G +E +L     IK       +K +E I
Sbjct: 177 IEYMAILGDKIDNVPGIPGIGEVTAAALVRHFGTVEEMLRRPEEIKAALSRGGEKVKEKI 236

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   E  R +R+LV LR D+ +            +  R+ +    LEF++L+  +  
Sbjct: 237 VASEERIRKNRQLVSLRRDLVLPFAPGQFERRRPDEARVRALFSELEFSRLLKDLPA 293


>gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 504

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 200/510 (39%), Positives = 304/510 (59%), Gaps = 12/510 (2%)

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSS 527
            +VL  YG  ++G   D M+  YVL      H +  +A+ +L Y      E++    K+ 
Sbjct: 1   MIVLQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQ 59

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
             +  +    V  +A E++++ L+L  +L  +L       ++  ++ P++ V+  +E  G
Sbjct: 60  KNMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNG 119

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646
           + +D + L+Q SA  +  +  +E+ IY+L+GE FN++SPKQ+G++LF KLK      KTK
Sbjct: 120 VLLDTEALQQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTK 179

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TGQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  IN RT RVHT ++  
Sbjct: 180 TGQYVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFNQT 238

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYSQIELRI+AH+++   
Sbjct: 239 VTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 298

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           +   F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYGIS F LA ++ + R 
Sbjct: 299 MIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRK 358

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +INS  + +R   ER 
Sbjct: 359 EAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERN 418

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           AINAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F VP  E     +I++ 
Sbjct: 419 AINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIE 478

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            MEKA      + VPLK +     NW E +
Sbjct: 479 EMEKA----YRMHVPLKADCGWGKNWLEAH 504


>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
 gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1060

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 191/494 (38%), Positives = 291/494 (58%), Gaps = 17/494 (3%)

Query: 483  MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS--QVQE 540
                 D+ L +Y+LD  R+ + +  +A+++  +  +E         P D+  D   +  +
Sbjct: 574  PAPASDLKLAAYLLDPVRNRYYLVDVARQFFGWELEE--------GPADRPDDPACRTTQ 625

Query: 541  HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                ++ +  +L   +  +L    L  VY  ++ P++ V++ ME  GI +D+  L+++  
Sbjct: 626  LLGRDAALCARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGR 685

Query: 601  EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              ++    L E IY L+GE FN++S +QLG ILF +L  P   KTKTG + T A+ LE +
Sbjct: 686  LFTRRSQELAEQIYQLAGETFNINSTQQLGQILFERLGLPVVKKTKTG-YSTDAEVLETL 744

Query: 661  NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                +PI + +LE+R L K++ TY D L  HI     RVHT +      TGRL+S +PNL
Sbjct: 745  AAR-HPIAELVLEYRSLVKLQGTYVDGLAEHIGPDG-RVHTTFQQTVAATGRLSSTQPNL 802

Query: 721  QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
            QNIPI+ + G+ +RRAF++PP  +L++ADYSQIELR+LAH +    L + F    D+H  
Sbjct: 803  QNIPIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDEGLLEAFARGQDVHAR 862

Query: 781  VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
             A+EIFGV +E+V+P+ RR AK +NF + YG + + LA  LRI R++A  ++ RYF R+P
Sbjct: 863  TASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDYGLARALRIDRADARRFMDRYFERYP 922

Query: 841  GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            G+  Y+E+T    RQ+G V T+ GRR    EI      IR   ER AIN PIQG+AADI 
Sbjct: 923  GVKRYMEETIRRARQHGEVTTLLGRRRPVPEIRHRVYHIRQNAERVAINTPIQGTAADIM 982

Query: 901  RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
            + AMI V+++L    L  +++LQ+HDEL+ E PE+E+   + ++   ME A      L V
Sbjct: 983  KLAMIRVYRALAGEGLRARIVLQVHDELLVEAPEDEVPAVAALLRREMEGA----FPLAV 1038

Query: 961  PLKVNIKVSNNWQE 974
            PL V++K   NW E
Sbjct: 1039 PLVVDVKAGTNWYE 1052



 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/323 (35%), Positives = 171/323 (52%), Gaps = 14/323 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L L+DG S +YRAF+A P L+   DG+P NA+ GF  ML +LL+    +    +  V
Sbjct: 9   DTKLVLIDGHSLMYRAFFALPPLATA-DGVPTNAVYGFLTMLLRLLEEVAPQ----YIGV 63

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD     FR E +P YK +RP+ P+ L PQ PLV+    A G+  +E +GFEADD++ T
Sbjct: 64  AFDRGLPAFRVERFPAYKGHRPEQPDELRPQFPLVKDVLAAMGVATVEHEGFEADDLLGT 123

Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
             + A   G   V +++ D+D++QLV     +  T K     ++ D   + ++ GI P +
Sbjct: 124 LAHRARAAGVDRVLLVTGDRDVLQLVGDGVEVLLTRKGISDLQRYDEARIREEMGIAPAQ 183

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++AL GD  DNIPG+PGIG KTA  L+Q++G+LE +L        KK    + +YA+
Sbjct: 184 FLDVKALMGDPSDNIPGVPGIGEKTALKLIQQFGDLETVLARPEAAGGKKLPGLLRQYAD 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            ARLSR+L  +RTD P+    E       +   L   L  LEF  L++R+        A 
Sbjct: 244 QARLSRELARIRTDAPVEFDPERFARRPPDPAVLRPLLLRLEFRSLVDRLGLQAGRSTAG 303

Query: 299 I----EPVVLDINTTENKGIAIE 317
                E    D      +G A+E
Sbjct: 304 TRASGETGPGDGQDPNREGQAVE 326


>gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
 gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
          Length = 877

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/759 (31%), Positives = 392/759 (51%), Gaps = 46/759 (6%)

Query: 245 KLVMLRTDVPITIPLE-HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +L      + I    +    +E+ N   +    K +  T+ I+        D+++  P V
Sbjct: 138 QLASDHITICIPKTKKGQTTVEEYNTEGVRKLYK-VTPTEFID--VKALMGDSSDNIPGV 194

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ---KLFLERLQKLSQ 360
             I       I  +     +      + S+  ++ + +N+ +  Q    L    +Q   +
Sbjct: 195 PGIGEKGATAIISQFGSIENAYDHAEEISNTRNRNALLNNYEMAQMSKTLATINIQSPVE 254

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSAS-FKIITDTMD----------AFHSKPI-- 407
                     I     ++  +++LE       F  +T T D           F + PI  
Sbjct: 255 VTPEQCKLEDIYTEDALE-MIKRLEFKSMIQRFGSVTSTNDCEGGFKYINNPFDADPIFE 313

Query: 408 ----AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEH 461
               A  I     ++  +F V   F + +V+      GK     E  I+  ++     + 
Sbjct: 314 QAKNADNIGVFIYRNKDNFGVSLCFNNDNVY----YIGKEGFVTEDYIIEKVRDLVNAKA 369

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518
            L I  NIK +  +L           DI + +Y+L+  ++++D   IA+++L        
Sbjct: 370 ELTIL-NIKENNDILEN--DDAESIFDISIAAYLLNPLQNTYDYDDIAREYLGMNVPAFD 426

Query: 519 EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           EI  K++K+  P D+I ++ + ++A  N+ V  +    L  KL   ++L +Y  ++ P+ 
Sbjct: 427 EIFPKTKKNETPSDEIPEN-ILKYACYNAYVAYKAKDALTEKLKETEMLDIYNNVEIPLT 485

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
             +  ME  GI +  D LK+    +   + +LE++I+  +G +FN++SPKQLG+ILF ++
Sbjct: 486 YALYDMEQAGIMVAGDKLKEYGERLKTGIDALEKDIFAEAGHEFNINSPKQLGEILFGEM 545

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           + P G KTKTG + T+A  LE++   D P +  ILE+RQL+K+KSTYAD L  +I +   
Sbjct: 546 QLPGGKKTKTG-YSTSASVLEKLE-PDYPFVSKILEYRQLAKLKSTYADGLAVYIGEDN- 602

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+H  ++   T TGR++S EPNLQNIP++  LG++IR+ FI       I ADYSQIELRI
Sbjct: 603 RIHGKFNQTITATGRISSTEPNLQNIPVRMPLGREIRKVFIPKEGCVFIDADYSQIELRI 662

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH++    L   + +S DIH   A+ +F V +E+V+ + R +AK +NF I+YGIS F L
Sbjct: 663 LAHMSDDKNLIDAYNHSKDIHAATASLVFHVPLEEVTKEQRSNAKAVNFGIVYGISSFGL 722

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           +  L I R EA  YIK YF  +PGI  Y++ +    ++ GY  T+FGRR    E+ S   
Sbjct: 723 SNDLSISRKEAEQYIKDYFISYPGIKNYLDNSVKEAKEKGYSVTMFGRRRPIPELTSGNF 782

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             R   ER A+N+PIQGSAADI + AMI+V K L++  L +K++LQ+HDEL+ E  E E+
Sbjct: 783 MQRQFGERVAMNSPIQGSAADIMKIAMINVAKELKEKDLKSKIVLQVHDELLIEAYENEV 842

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                I+  +ME+A     +L VPL V+++V NNW E +
Sbjct: 843 EQVKDILKRNMEQAA----HLNVPLDVDVQVGNNWDEAH 877



 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 98/296 (33%), Positives = 160/296 (54%), Gaps = 11/296 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              L+DG S + RAFY  P+ +   +GL  NA+ GF N+++K++ + + +    + AV F
Sbjct: 3   KFVLIDGHSILNRAFYGVPIFTN-SEGLHTNAVFGFLNIMFKIIDSKQPD----YMAVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E++ DYK  R  + E L  Q+P+++   Q   I  +E+ G+EADD+I T +
Sbjct: 58  DVHQPTFRHEMFKDYKGTRKPMMEELREQVPVIKELLQKMNITTVELPGYEADDVIGTLS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
              EK G  V +IS D+DL+QL S    +     +      E+ + E V K + + P + 
Sbjct: 118 KKGEKAGMEVDVISGDRDLLQLASDHITICIPKTKKGQTTVEEYNTEGVRKLYKVTPTEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GDS DNIPG+PGIG K A  ++ ++G++EN   +A  I   + R  +L   E 
Sbjct: 178 IDVKALMGDSSDNIPGVPGIGEKGATAIISQFGSIENAYDHAEEISNTRNRNALLNNYEM 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           A++S+ L  +    P+ +  E   LED      +  +K LEF  +I R  +    +
Sbjct: 238 AQMSKTLATINIQSPVEVTPEQCKLEDIYTEDALEMIKRLEFKSMIQRFGSVTSTN 293


>gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
 gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
          Length = 884

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 203/532 (38%), Positives = 313/532 (58%), Gaps = 18/532 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
            ++     ++   K   + K   + L+R GI +   + D++L+SY+L++  +S+D+ ++A
Sbjct: 363 QHVSDLLTSKTIKKNLFDAKRTYVGLYRQGIELANVDFDMLLVSYLLNTTNNSNDVGTVA 422

Query: 510 QKWLSYT----RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
                Y      +   K  K  I     +      H +     I  L   +   L     
Sbjct: 423 HLHGFYNVKTDEEVYGKGAKRHIDPQSPA---FLAHLVHKVKAIDALHDGMFKDLDAHNQ 479

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y  ++  +  V++ MEI GI++D   L+ + ++  + L  +E+ I+  +GE+FN+ S
Sbjct: 480 SKLYWDIEIKIAFVLAHMEINGIKVDAATLEGMGSKFKERLAEIEQTIFQEAGEEFNIGS 539

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF KL+ P   KTKTG   +T+ D+ +    D PI++N+L++RQ+SK++STY 
Sbjct: 540 PKQLGKILFEKLRLPILKKTKTGY--STSVDVLEKLAPDAPIVQNVLDYRQISKLQSTYV 597

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKK 744
           D L   I+    +VHT Y    T TGRL+S++PNLQNIP++++ G+ IR+AFI   P  +
Sbjct: 598 DGLLKVIHPDDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRSEEGRLIRQAFIPSHPGWQ 657

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803
           + S+DYSQIELR+LA I     +   F+N  DIH   A  IFG+   E+V+P++RR AK 
Sbjct: 658 IFSSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQAKA 717

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS F LA+   I R +A  +I+RYF  +PG+ +Y E    F R + YVETI 
Sbjct: 718 VNFGIVYGISDFGLASNTGITRKQAHQFIERYFEEYPGVKKYTEDIVEFARNHRYVETIA 777

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +INS   ++R+  ER A+N PIQGSAADI + AMI++  +++D  + T+MLLQ
Sbjct: 778 HRRRYLPDINSKSFNLRSFAERTAMNTPIQGSAADIIKIAMINMADAIKD--MKTRMLLQ 835

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +HDEL+FEVP+EE+ T  Q+I   M+ A    I+L VPLKV       W + 
Sbjct: 836 VHDELIFEVPDEELDTVKQLIPSVMDSA----IHLNVPLKVESHWGKTWYDA 883



 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 156/297 (52%), Gaps = 14/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S  ++AFYA            GL  +AI GF  ML K+L + +    
Sbjct: 1   MTKK--LLLIDGNSIAFKAFYALYTAMDKFTNPSGLHTSAIYGFNRMLDKVLADEK---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +   V FD    TFR ++Y DYK  R K P  L  Q P ++    A GI   E+  +EA
Sbjct: 55  PTDVLVAFDAGKTTFRTKMYADYKGGRAKTPTELSEQFPFLKELINARGISTYELPDYEA 114

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DDII T    AE+ G + V I++ D+DL QL S  T +  + K     E    +HV +K 
Sbjct: 115 DDIIGTLAKKAEEAGDYQVVIVTGDRDLTQLTSDKTTVQVSKKGVTELETYTPKHVEEKL 174

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P +++ ++ L GD+ DN PG+  +G KTA  L+Q++G ++N+  N  ++  KK +E+
Sbjct: 175 GVKPSQIIEIKGLKGDNSDNYPGVEKVGDKTAVKLVQQFGTIDNLYQNIDQVSGKKLKEH 234

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           ++     A  +  L  +  D P+T+ L+ L  +  N  +L  F + + F   + +++
Sbjct: 235 LIHDQAQAERAHTLATINRDAPVTVSLDQLKYQGDNIDKLTDFYERMGFKSFLAKLS 291


>gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7]
          Length = 833

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 248/923 (26%), Positives = 409/923 (44%), Gaps = 105/923 (11%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 4   IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEADDV 63

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 64  IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLTKDCVEKYGILPSQFT 118

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  GI GIG K A  LLQ+ G+LE I  +      +   K  + ++   
Sbjct: 119 DYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYNHLDLAKNLLSPKMYQALIHDK 178

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L  +               N   ++   LK   F   +  +        
Sbjct: 179 ESAFLSKELATLERECIQEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLENAPTTLI 238

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  PV+                                   S   S+  P K  +  L+
Sbjct: 239 LDNAPVL----------------------------------DSMPPSDNAPTKSSMIVLE 264

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                           NT  +  +++KLE   +  F  +      F+ +   +A++ L Q
Sbjct: 265 ----------------NTASLSMFLEKLENPNARVFVRL-----VFNKEKEMLALAFLLQ 303

Query: 417 KDDTSFKVE-TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                  +E  +F   S+   Q++  +                 +H   IGH++K     
Sbjct: 304 DQGYFLPLEEALFSPFSLEFLQNAFSQML---------------QHARIIGHDLKPLLSF 348

Query: 476 L-HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           L  +Y +S+      D  +++++ +  +       + +++L      + +  K     +K
Sbjct: 349 LKAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVLKEYLQEDLI-LHEKIKDFKTKNK 405

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
              ++  E      N + +L        + E LL +   ++ P + V+  ME  G +ID 
Sbjct: 406 ---AEQLERLNLELNALKRLCEYFEKGGLEENLLSLARGIEMPFMKVLINMEFQGFKIDA 462

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
              K++  E    L  LE  I DL GE FNL+SPKQLG++L+ KL  P           +
Sbjct: 463 PYFKRLEQEFKDELKVLERQILDLIGEDFNLNSPKQLGEVLYEKLNLPKNKS------HS 516

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGR
Sbjct: 517 TDEKSLLKIMDKHPSISLILEYRELNKLSNTYTTPLLRLKDKDDK-IHTTFIQTGTATGR 575

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S  PNLQNIP+++  G  IR+ FI S     L+  DYSQIELR+LAH ++   L + F
Sbjct: 576 LSSHSPNLQNIPVRSSKGLLIRKGFISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAF 635

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP SEA  Y
Sbjct: 636 LKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLSEAKSY 692

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ YF RFP I +Y+ + +  + +     T+ GR   +D  N     ++    R  +NA 
Sbjct: 693 IEAYFKRFPSIKDYLNRMREEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVNAI 751

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
            QGSA+D+ +  M+ V +  ++   + ++LLQ+HDEL+FE+ E+      Q I   +   
Sbjct: 752 FQGSASDLLKLGMLKVSERFKNDS-SVRLLLQVHDELIFEIEEKNALKLQQEIQGILNH- 809

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
                 LRVPL+ +  ++  W E
Sbjct: 810 --EVYALRVPLETSAFIAKRWNE 830


>gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
 gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
          Length = 881

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/668 (34%), Positives = 357/668 (53%), Gaps = 32/668 (4%)

Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW 380
            ++  I     + LS   + IN+   P  L +E+L    Q+     ++ +     + Q +
Sbjct: 232 MKENLINDKDQAFLSKTLATINT-DAPVDLTIEQLVYKGQHTEKLVAFYQ---EMNFQSF 287

Query: 381 VQKL------ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH 434
           + KL      + +   SF  +T+   A            ++  DD     E +    S  
Sbjct: 288 LSKLSVSDADKNLADISFDYVTEVQPAMFG---GSGHLYVEMLDDNYHISEIVGFAWSNG 344

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMS 493
                T   +L ++  + L+ +  +    K   + K   + LHRY  S  G   D +L  
Sbjct: 345 NRIYVTDNLSLLED--NALQDWLFDAKRTKSVFDAKRTTVALHRYVGSPNGIQFDSLLAC 402

Query: 494 YVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           Y+LD+  SS+D+A +A ++    +        K  K  +P D   + +   H       +
Sbjct: 403 YLLDTNDSSNDLALVAHRYGLTEIETDEAVYGKGAKKGLPED---NERFYSHLARKVATM 459

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
            +L   L  +L+ +    +Y+ ++ P+  ++++MEITGI +D   L  + +E +  L  +
Sbjct: 460 QKLDTKLSDELVEKGQWTLYKEMELPLSFILAEMEITGIHVDAQRLIAMKSEFATKLHDI 519

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
           EE IY  + E+FNL+SPKQLG ILF K+  P   KTKTG   +TA D+ +      PI++
Sbjct: 520 EEKIYAQANERFNLNSPKQLGVILFEKMGLPVIKKTKTGY--STAVDVLEQLKVQAPIVE 577

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           +IL +RQ++KI+STY + L   I    + VHT Y    T TGRL+S++PNLQNIPI+ + 
Sbjct: 578 DILTYRQIAKIQSTYVEGLLRMIQSDGK-VHTRYVQTLTQTGRLSSVDPNLQNIPIRLEE 636

Query: 730 GQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G+KIR+AF+       + S+DYSQIELR+LAHI+K   L   F    DIH   A  +FG+
Sbjct: 637 GRKIRQAFVPRNKNWVIYSSDYSQIELRVLAHISKDEHLQAAFIEGQDIHTSTAMRVFGL 696

Query: 789 N-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
              E V+P MRR AK +NF I+YGIS + L+  L I R +A  YI  YF R+PG+  Y+E
Sbjct: 697 ESAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYFERYPGVKAYME 756

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                 +++GYVET++ RR +  ++ +   +IR+  ER AIN+PIQGSAADI + AMI +
Sbjct: 757 NVVEQAKKDGYVETLYHRRRYLPDLYAKNYNIRSFAERTAINSPIQGSAADILKIAMIEM 816

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           +K L++ KLA  MLLQ+HDELVFEVPEEE+    Q++   ME A    + L +PL  +  
Sbjct: 817 NKRLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVKEVMEHA----VTLAIPLVTDSN 872

Query: 968 VSNNWQEE 975
               W + 
Sbjct: 873 WGETWYDA 880



 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 101/294 (34%), Positives = 165/294 (56%), Gaps = 12/294 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N L LVDG+S  +RAF+A        +  +GL  NA+  F NM  K+++  +     +H
Sbjct: 3   KNKLLLVDGNSVAFRAFFALHQSLDRFKNANGLHTNALYAFHNMFTKVMEKEK----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR ++Y +YK  R K P     QLP +R    AFG+   E+  +EADDI
Sbjct: 59  ILVAFDAGKTTFRTQMYAEYKGGRAKTPTEFKEQLPYLRELLDAFGVKHYELPNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175
           I T+   A+KE F V I++ D+DL QL      +  TVK     E    E + +K+ G+ 
Sbjct: 119 IGTFAQRADKESFDVVILTGDRDLTQLADEHIKVDITVKGVSEIEAYTPESIAEKYQGLV 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++ L GDS DNIPG+  IG KTA  LL ++G++E I  +   +K  K +EN++ 
Sbjct: 179 PKQIIDMKGLAGDSSDNIPGVTKIGEKTAIKLLNQFGSVEGIYEHLDELKPSKMKENLIN 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
             + A LS+ L  + TD P+ + +E L+ +  +  +L++F + + F   +++++
Sbjct: 239 DKDQAFLSKTLATINTDAPVDLTIEQLVYKGQHTEKLVAFYQEMNFQSFLSKLS 292


>gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d]
          Length = 827

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 251/925 (27%), Positives = 412/925 (44%), Gaps = 115/925 (12%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 4   IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDV 63

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 64  IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 118

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 119 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 178

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDA 296
           E+A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 179 ESAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLEN------ 232

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            +  P++LD                                        TP    LE   
Sbjct: 233 -SPTPLILD---------------------------------------NTP---LLENAP 249

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           K S   +       + NT  +  +++KL+   +  F      +     K +A+A    DQ
Sbjct: 250 KKSCMIV-------LENTAPLSAFLEKLKNSNARIF---MRLVLNKEKKVLALAFLYEDQ 299

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 + E +F   S+   Q++  K                 +H   IGH++K     L
Sbjct: 300 GYFLPLE-EALFSPFSLEFLQNAFFKML---------------QHACIIGHDLKPLLSFL 343

Query: 477 -HRYGISMRGFE--DIMLMSYVLDSGRSSHD---IASIAQKWLSYTRKEILKSRKSSIPI 530
             +Y +S+      D  +++++ +  +   D      + ++W+ + + +  K++     +
Sbjct: 344 KAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKVEKL 403

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +++             N + +L        + E LL +   ++ P + V+  ME  G +I
Sbjct: 404 EQLDME---------LNALKRLCEYFEKGGLEEGLLALAREVETPFMKVLMGMEFQGFKI 454

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D    K++  E    L  LE  I DL G  FNL+SPKQL +IL+ KL+ P          
Sbjct: 455 DAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKS------ 508

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           ++T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T T
Sbjct: 509 RSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTAT 567

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQ 769
           GRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L  
Sbjct: 568 GRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMD 627

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L IP +EA 
Sbjct: 628 AFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAK 684

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            YI+ YF RFP I +Y+ + K  + +     T+ GR   +D   +    I+    R  +N
Sbjct: 685 SYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDRIKGDYLREGVN 743

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           A  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   + 
Sbjct: 744 AIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILN 802

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
               P   LRVPL+ +  V+N W E
Sbjct: 803 NEVYP---LRVPLETSAFVANRWNE 824


>gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
 gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 210/597 (35%), Positives = 327/597 (54%), Gaps = 20/597 (3%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
           E +   +F + TD          + A    + +D    K   +   L    +        
Sbjct: 308 EEVTDKTFDVETDFQHIDFKNL-SHATIHFELEDTNYLKDNILKFGLYTDDTHIVINAED 366

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503
           + +   S L ++ E+   +K  ++ K   +  HR  I+++    D+ML SY++D  R+  
Sbjct: 367 IKQH--SDLIEWLEDAQTVKTVYDAKKTYVAAHRLDINIQNVQFDVMLASYIIDPSRAID 424

Query: 504 DIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           D+ S+   +     K+      K +K  IP D I    + EH    +  I     L+  +
Sbjct: 425 DVKSVVSLYGQNYVKDNVSIYGKGKKHHIPEDNI----LNEHVASITEAIASAKPLMEEQ 480

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L     + +   L+ P+  ++S+ME  GI  D + LK +  EI + L  L +NI++ +GE
Sbjct: 481 LKEYNQVELLADLELPLAKILSEMEEIGIYTDVNDLKHMENEIQEKLDVLIKNIHEAAGE 540

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SPKQLG +LF  LK P   KTKTG   +TA D+ +   G++PII++ILE+RQLSK
Sbjct: 541 EFNINSPKQLGVVLFETLKLPVIKKTKTGY--STAVDVLEQLKGEHPIIEHILEYRQLSK 598

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           ++STY + L   I+K   R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF  
Sbjct: 599 LQSTYVEGLQKVISKDN-RIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKP 657

Query: 740 -PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
                 ++SADYSQIELR+LAHI +   L + F +  DIH   A ++F V    V   MR
Sbjct: 658 TSEDSVILSADYSQIELRVLAHITQDESLKEAFIHGHDIHTATAMKVFNVEANDVDSLMR 717

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R AK +NF I+YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  GY
Sbjct: 718 RQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGY 777

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           VET+  RR +  +I S   ++R+  ER A+N PIQGSAADI + AM+  ++ +++     
Sbjct: 778 VETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFNEKVKNTNYHA 837

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           K+LLQ+HDEL+FE+P+ E+   S+ +   ME A    ++L VPLKV+      W + 
Sbjct: 838 KLLLQVHDELIFELPKSEVEDFSEFVEEIMENA----LDLDVPLKVDSSYGPTWYDA 890



 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 121/470 (25%), Positives = 217/470 (46%), Gaps = 24/470 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+++  +      HF V 
Sbjct: 17  DKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIIKEEQPN----HFLVA 71

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 72  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELENYEADDIIGTL 131

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A++ G+   II+ D+DL QL +    +Y T K     +      + +K+ G+ P+++
Sbjct: 132 SKEADQSGYETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPSFIAEKYNGLEPKQI 191

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+PG+G KTA  LL ++ ++E +  N   +  KK +E ++   + 
Sbjct: 192 IDMKGLMGDTSDNIPGVPGVGEKTAIKLLNQFNSVEGVYDNIDEVTAKKLKEKLINSKDD 251

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           A +S+ L  +  + PI + L+   LE+  +    I   K LEF +L++ +    D +   
Sbjct: 252 ALMSKDLATINVESPIEVSLKDTKLENQDDNHEKIELFKKLEFKQLLSDIDE--DANNEE 309

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN--SEQTPQKLFLERLQ 356
           +     D+  T+ + I  +         +    + L D   K    ++ T   +  E ++
Sbjct: 310 VTDKTFDVE-TDFQHIDFKNLSHATIHFELEDTNYLKDNILKFGLYTDDTHIVINAEDIK 368

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLE----TIGSASFKIITDT--MDAFHSKPIAIA 410
           + S      +    +    D ++           I +  F ++  +  +D   +     +
Sbjct: 369 QHSDLIEWLEDAQTVKTVYDAKKTYVAAHRLDINIQNVQFDVMLASYIIDPSRAIDDVKS 428

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK--EILSYLKKFFE 458
           + +L  ++     V         H  +D+     +    E ++  K   E
Sbjct: 429 VVSLYGQNYVKDNVSIYGKGKKHHIPEDNILNEHVASITEAIASAKPLME 478


>gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
 gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
          Length = 888

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 217/585 (37%), Positives = 333/585 (56%), Gaps = 19/585 (3%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D +D        ++      +++        F+  +      S   + L +E    LK  
Sbjct: 313 DNLDELGQLTGEVSFYLEMPEENYHTSPFAGFVIGNEGHWFTSRDVDLLKEE---PLKDL 369

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW--- 512
            +++   K   N K   + LHR GI +     D++L SY+L++  +S+D+  +AQ+    
Sbjct: 370 LQSDSVKKNVFNAKAQIVGLHRLGIPLENINFDLLLASYLLNTNDNSNDLGQVAQEHGYD 429

Query: 513 -LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +    +   K  K ++P D   D     H    +  I QL   L  KL   K   +Y  
Sbjct: 430 DVRTDEEVYGKGAKRAVPDD---DETFFSHLATKARAIEQLRKDLFAKLDENKQTPLYTD 486

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+++MEI G+ +D   LK + +++++ L  +E  IY  +GE+FN++S KQLG 
Sbjct: 487 IELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEFNINSTKQLGH 546

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KLK P   KTKTG   +TA D+ +     +PI++ ILE+RQ++K++STY   L   
Sbjct: 547 ILFEKLKLPVIKKTKTGY--STAVDVLEKLADKSPIVEQILEYRQIAKLQSTYITGLLKV 604

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADY 750
           I+   Q++HT Y    T TGRL+S++PNLQNIP++   G+ IR+AF+      ++ S+DY
Sbjct: 605 IHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDY 664

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSII 809
           SQ+ELR+LAHI     L + F+N  DIH   A  IF +  + ++   MRR AK +NF I+
Sbjct: 665 SQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIV 724

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA ++ + R+EA ++I+ YFH FPG+ +YI  T  F ++NGYVETI  RR + 
Sbjct: 725 YGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITHRRRYL 784

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I++   + R+  ER A+N PIQGSAADI + AMI +   LE   L  KM+LQIHDELV
Sbjct: 785 PDIHAKSFNKRSFAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMILQIHDELV 844

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           FE P+EEI   S+++   M+ A    + L VPLKV+ K  + W +
Sbjct: 845 FEAPKEEIPVLSELVPKVMDSA----VKLDVPLKVDSKYGDTWYD 885



 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 114/320 (35%), Positives = 170/320 (53%), Gaps = 15/320 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S ++RAF+A           DGL   AI GF  ML  +LQN + ++ 
Sbjct: 1   MTKQ--LLLIDGNSIVFRAFFAMHNQMDKFTNKDGLHTAAIYGFKLMLDHVLQNFKPDA- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD   VTFR ++Y DYK  R K P  L  Q+P VR   +  G+ + E+  +EA
Sbjct: 58  ---ALVAFDAGKVTFRTKMYDDYKGGRNKTPNELTEQIPYVRELIKDSGLHSYELANYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+   I++ D+DL QL S  T +  T K     E     HV +K G
Sbjct: 115 DDIIGTLAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTPAHVEEKLG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ ++AL GDS DN PG+  IG KTA  L++++G++E +  +   +K+ K +E++
Sbjct: 175 ITPRQIIDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYDHIDDLKKSKMKEHL 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--VATT 291
           +E  E AR  + L  +  D PI I L+ L  +      LI F K + F   + +  V  T
Sbjct: 235 IEDEEVARQCKTLATILQDAPIKIGLDDLQYQGPQTDDLIKFYKEMGFKSFLKKMDVDGT 294

Query: 292 YDCDAANIEPVVLDINTTEN 311
            + D A I P+   + T +N
Sbjct: 295 GEEDEAEIAPIDYTVLTKDN 314


>gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13]
          Length = 877

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/710 (32%), Positives = 377/710 (53%), Gaps = 52/710 (7%)

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
            + A     +  NIE ++  I+    K +  + E +++  I + Q +++  +      E 
Sbjct: 199 EKTAIKLLKEFGNIETLLESIDQVSGKKLKEKLEDNKEQAIMSKQLATIMTEAPV---EV 255

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           T ++L  E          +      I         + KL   G    + +T+ ++     
Sbjct: 256 TVEELLYE--------GFDKKKVVDIFKELSFNSLLDKLGEDG----ETVTEDLED---- 299

Query: 406 PIAIAISTLDQKDDTSFKVETIFI-----------DLSVHTSQDSTGKNTLTKEIL---S 451
              I+   L++  +  F  E  F+           D+      + TG   +  E+     
Sbjct: 300 ---ISFEILEEVKEEHFAKENFFMVEVLDENYHRADIQGIALVNETGNYFIPTEVALQSE 356

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510
               F  +    K   + K   + L   GI + G + D ++ SY+++   +S D+A IA+
Sbjct: 357 EFAAFASDHKRKKTVFDAKRAIVALKWKGIELNGIDFDFIIASYIVNPSETSTDLAEIAR 416

Query: 511 K--WLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           K  +      E    K  K ++P  +    +V +H +  +  + ++      +L   + L
Sbjct: 417 KKGYYQIETDEAVYGKGAKRAVPDQQ----KVADHLVRKTFAMQEMKESFIHELKDNEQL 472

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            ++E L+ P+  V+ +ME  GI++D+  L+++  ++ + L  +EE I+DL+GEKFN++SP
Sbjct: 473 ELFEELEMPLTLVLGEMEALGIKVDKARLEEMGTDLGEKLEKIEEKIFDLAGEKFNINSP 532

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG ILF KL  P   KTKTG   +T+ D+ +     + +I+ IL +RQL K+KSTY +
Sbjct: 533 KQLGVILFEKLGLPPVKKTKTGY--STSADVLEKLAEKHEVIQQILHYRQLGKLKSTYIE 590

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKL 745
            L   I++ + ++HT ++ A T TGRL+S++PNLQNIP++ + G+KIR AFI       +
Sbjct: 591 GLLKVIHEDSNKIHTRFNQALTQTGRLSSIDPNLQNIPVRLEEGRKIREAFIPSHEDWVI 650

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            +ADYSQIELR+LAHIA    L + F+   DIH   A ++F V+ ++V+  MRR AK +N
Sbjct: 651 FAADYSQIELRVLAHIANDEKLIEAFKEDADIHTKTAMDVFHVSEDEVTSNMRRQAKAVN 710

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R +A  +I RY   FPG+ EY+E +    +  GYV T+  R
Sbjct: 711 FGIVYGISDYGLSQSLGITRKDAKTFIDRYLESFPGVKEYMEDSVLDAKDKGYVTTLLHR 770

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  EI S   ++R+  ER A+N PIQGSAADI ++AMI +   LE+  + +K+LLQ+H
Sbjct: 771 RRYLPEITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMANRLEEENMKSKVLLQVH 830

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           DELVFE P++EI    +I+   ME+A    + L+VPLKV+    + W + 
Sbjct: 831 DELVFEAPKDEIEKLKKIVPEVMEQA----VELKVPLKVDYSYGSTWYDA 876



 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 174/310 (56%), Gaps = 10/310 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K N L L+DG+S  YRAF+A PLLS +  G+  NAI GF  ML ++L+  +     +H
Sbjct: 1   MAK-NKLVLIDGNSIAYRAFFALPLLSNEK-GIHTNAIYGFTMMLMRILEEEK----PTH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + +YK  R K P  L  Q   +R    A+ I   E+  +EADDI
Sbjct: 55  MLVAFDAGKTTFRHKTFGEYKGGRQKTPPELSEQFSFLRELLDAYNIKRYELPEYEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A K+ + V IIS DKDL QL +    +  T K     +      + +K+G+  
Sbjct: 115 IGTLAQQAAKDDYEVKIISGDKDLTQLATDKITVDITKKGITDVDSYTPAFIEEKYGLNV 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++ L GDS DNIPG+PG+G KTA  LL+E+GN+E +L +  ++  KK +E + + 
Sbjct: 175 DQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKEFGNIETLLESIDQVSGKKLKEKLEDN 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            E A +S++L  + T+ P+ + +E L+ E  +  +++   K L F  L++++    +   
Sbjct: 235 KEQAIMSKQLATIMTEAPVEVTVEELLYEGFDKKKVVDIFKELSFNSLLDKLGEDGETVT 294

Query: 297 ANIEPVVLDI 306
            ++E +  +I
Sbjct: 295 EDLEDISFEI 304


>gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4]
 gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4]
          Length = 868

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 207/530 (39%), Positives = 325/530 (61%), Gaps = 29/530 (5%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
            E+L    +  E +  L   ++ K     L  YG        D++L +Y+++   + +++
Sbjct: 359 PEVLKSFFRLLEEKGGLVSTYDAKSCLHALEPYGFKPEMIGFDVLLAAYLVNPAAN-NEL 417

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            +IA +   +             P  ++          E +  I QL  +L+ K+ +++ 
Sbjct: 418 GAIAFEHAGFMLS----------PGAELP---------EKAQAIYQLTPILKSKIKLQEQ 458

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
            ++Y  ++ P+  V++ ME  G+++ ++ L+ +S E+ + L  L E IY L+GE+FNL+S
Sbjct: 459 EYLYYSVELPLAAVLADMEKVGVKVSEERLRSLSKELGEQLAQLSEEIYKLAGERFNLNS 518

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           P+QLG ILF KL      KTKTG + T A  LE++   ++ I+  +L +RQL+K+KSTY 
Sbjct: 519 PRQLGYILFEKLGLKPVKKTKTG-YSTDASVLEKLA--EHEIVAKVLVYRQLAKLKSTYT 575

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKK 744
           D+LP  I+  T R+HT +  A T TGRLAS EPNLQNIP++  LG++IR+AF++  P   
Sbjct: 576 DALPELIDPATGRLHTTFLQAGTATGRLASAEPNLQNIPVRDSLGRRIRQAFVAEGPDYV 635

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           L+SADYSQIELR+LAH+++   L + F    DIH   AAEIFGV+ ++V+P+MR  AK +
Sbjct: 636 LLSADYSQIELRVLAHLSEDPGLCEAFVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVV 695

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YG+S + L+ +L+I   EA +YI+RYF R+P + ++IE+     R+ GYV TI  
Sbjct: 696 NFGIVYGMSDYGLSQELKIEPGEAHEYIERYFRRYPRVKQFIERVIAQAREKGYVTTILN 755

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  EI S   + R + ER AIN  IQGSAAD+ ++AM+ +H+ L+      +M+LQ+
Sbjct: 756 RRRYIPEILSSNRNQRQLGERLAINTTIQGSAADLIKKAMVDIHRQLKGQGFKCRMILQV 815

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           HDEL+FEVP+EE+   + II  +ME+A    +  +VP+K N+KV  NWQ+
Sbjct: 816 HDELLFEVPKEELEKVAPIIKSTMEQA----LPFKVPIKANLKVGPNWQD 861



 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 109/294 (37%), Positives = 158/294 (53%), Gaps = 11/294 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   L L+DGSS  YRAF+A P L R   GLP  A+ GF +ML+K+L+  R     +   
Sbjct: 2   KGKTLLLLDGSSIAYRAFFALPSL-RTRTGLPTGAVYGFTSMLFKVLEERR----PTAIV 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR+ +   YKA+RP  P+ L  Q  L++    A  +P +E +GFEADD+I 
Sbjct: 57  AAFDKSKTTFRHALAETYKAHRPATPDELRQQFNLIKEVLTALNVPVVEKEGFEADDLIG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AEKEG+   I++ D D +QLVSP T +    K        +   V +++G+ P +
Sbjct: 117 TLVDRAEKEGWQCLIVTGDLDALQLVSPLTTVVLMRKGISEIAVFNEAEVKRRFGVTPRQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +   +AL GD+ DNIPG+PGIG KTA+ LLQ + +LE +L +   +   K RE +  + E
Sbjct: 177 LPDFKALAGDASDNIPGLPGIGPKTASRLLQSHQSLEKLLESKESLPA-KLRETLERHKE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
            A L++KL ++R DVP+   +        N    +     LEF  L  R    +
Sbjct: 236 EAVLAKKLALIRRDVPLEEEIIR-PWPGPNILATLEVFSRLEFRTLAKRFLELF 288


>gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23]
 gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23]
          Length = 888

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/585 (37%), Positives = 333/585 (56%), Gaps = 19/585 (3%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D +D        ++      +++        F+  +      S   + L +   + LK  
Sbjct: 313 DNLDELGQLTGEVSFYLEMPEENYHTSPFAGFVIGNEGHWFISRDVDLLKE---APLKDL 369

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW--- 512
            +++   K   N K   + LHR GI +     D++L SY+L++  +S+D+  +AQ+    
Sbjct: 370 LQSDSVKKNVFNAKAQIVGLHRLGIPLENINFDLLLASYLLNTNDNSNDLGQVAQEHGYD 429

Query: 513 -LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +    +   K  K ++P D   D     H    +  I QL   L  KL   K   +Y  
Sbjct: 430 DVRTDEEVYGKGAKRTVPDD---DETFFSHLATKARAIEQLRKDLFAKLDENKQTPLYTD 486

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+++MEI G+ +D   LK + +++++ L  +E  IY  +GE+FN++S KQLG 
Sbjct: 487 IELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEFNINSTKQLGH 546

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KLK P   KTKTG   +TA D+ +     +PI++ ILE+RQ++K++STY   L   
Sbjct: 547 ILFEKLKLPVIKKTKTGY--STAVDVLEKLADKSPIVEQILEYRQIAKLQSTYIAGLLKV 604

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADY 750
           I+   Q++HT Y    T TGRL+S++PNLQNIP++   G+ IR+AF+      ++ S+DY
Sbjct: 605 IHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDY 664

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSII 809
           SQ+ELR+LAHI     L + F+N  DIH   A  IF +  + ++   MRR AK +NF I+
Sbjct: 665 SQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIV 724

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA ++ + R+EA ++I+ YFH FPG+ +YI  T  F ++NGYVETI  RR + 
Sbjct: 725 YGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITHRRRYL 784

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I++   S R+  ER A+N PIQGSAADI + AMI +   LE   L  KMLLQIHDELV
Sbjct: 785 PDIHAKSFSKRSFAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELV 844

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           FE P+EEI   S+++   M+ A    + L VPLKV+ K  + W +
Sbjct: 845 FEAPKEEIPVLSELVPKVMDSA----VKLDVPLKVDSKYGDTWYD 885



 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 163/312 (52%), Gaps = 13/312 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S ++RAF+A           DGL   AI GF  ML  +LQN + ++ 
Sbjct: 1   MTKQ--LLLIDGNSIVFRAFFAMHNQMDKFTNKDGLHTAAIYGFKLMLDHVLQNFKPDA- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD   VTFR ++Y DYK  R K P  L  Q+P VR   +  G+ + E+  +EA
Sbjct: 58  ---ALVAFDAGKVTFRTKMYDDYKGGRNKTPNELTEQIPYVRELIKDSGLHSYELPNYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+   I++ D+DL QL S  T +  T K     E     HV +K G
Sbjct: 115 DDIIGTLAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTPAHVEEKLG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ ++AL GDS DN PG+  IG KTA  L++++G++E +  +   +K+ K +E++
Sbjct: 175 ITPRQIIDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYDHIDDLKKSKMKEHL 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +E  E AR  + L  +  D PI I L+ L  +      LI F K + F   + ++     
Sbjct: 235 IEDEEVARQCKTLATILQDAPIKIGLDDLQYQGPQTDDLIKFYKEMGFKSFLKKMDVDGT 294

Query: 294 CDAANIEPVVLD 305
            +    E   +D
Sbjct: 295 GEEDEAEIAPID 306


>gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
 gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
          Length = 885

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/531 (39%), Positives = 319/531 (60%), Gaps = 16/531 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
             LKK  E+    K   N K   + LHR GI +R  + D++L SY+L++  +S+D+  +A
Sbjct: 362 DPLKKLLESPAVAKNVFNAKAQIVGLHRLGIDLRNVDFDLLLASYLLNTNDNSNDLGQVA 421

Query: 510 QKWLSY----TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            +   +      +   K  K +IP D   D     H  + +  I  L   L  KL   + 
Sbjct: 422 LEHDYHEVATDEEVYGKGAKRAIPAD---DQVFYTHLAQKARAIDDLRAPLFKKLDDNQQ 478

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y  ++ P+  V++ MEITGI+++   LK + +++++ L  +E  IY  +GE+FN++S
Sbjct: 479 TPLYTDIEVPLTRVLAAMEITGIKVNAQTLKDMGSKLTERLADIESQIYAAAGEEFNINS 538

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            KQLG ILF KLK P   KTKTG   +TA D+ +      PI+++IL++RQ++K++STY 
Sbjct: 539 TKQLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADQAPIVEDILQYRQIAKLQSTYI 596

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKK 744
             L   I+   Q++HT Y    T TGRL+S++PNLQNIP++   G+ IR+AF+      +
Sbjct: 597 TGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHAGWQ 656

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKT 803
           + S+DYSQ+ELR+LAHI     L + F+N  DIH   A  IF +  + ++   MRR AK 
Sbjct: 657 IFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKA 716

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + LA ++ + R++A ++I+ YF  FPG+ +YI+ T  F R++GYVETI 
Sbjct: 717 VNFGIVYGISDYGLAQRIHVSRAQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVETIT 776

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  +I++   S R+  ER A+N PIQGSAADI + AMI + + ++  +L  +MLLQ
Sbjct: 777 HRRRYLPDIHAKSFSRRSFAERTAMNTPIQGSAADIIKIAMIRMKEEIKQRQLQARMLLQ 836

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           IHDELVFE P EEI    +++   M+ A    + L VPLKV  KV + W +
Sbjct: 837 IHDELVFEAPAEEIPVLQKLVPQVMDSA----VQLNVPLKVESKVGDTWYD 883



 Score =  314 bits (804), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 167/326 (51%), Gaps = 13/326 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S ++RAF+A           DGL   AI GF  ML  +L     ++ 
Sbjct: 1   MAKQ--LLLIDGNSIVFRAFFAMHNQIDKFTNKDGLHTAAIYGFKLMLDHVLDQFHPDA- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD   VTFR ++Y DYK  R K P+ L  Q P VR   +A G+ + E++ +EA
Sbjct: 58  ---ALVAFDAGKVTFRTKMYDDYKGGRNKTPDELTEQFPYVRELVEACGLHSYELKNYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T     ++ G+   I++ D+DL QL S  T +  T K     E     HV +K G
Sbjct: 115 DDIIGTLAKEGDEAGYETLIVTGDRDLTQLASDHTTVAVTHKGVTDTEHYTPAHVEEKLG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ ++AL GDS DN PG+  IG KTA  L++++G++EN+  +   +K+ K +E++
Sbjct: 175 ITPRQIIDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVENLYDHIDELKKSKMKEHL 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +E    AR  + L  +  D P+ I L+ +         L++F + + F   + ++    +
Sbjct: 235 VEDEAIARECKTLATILQDAPLEIGLDDITYRGEQTEELVAFYQQMGFKSFLAKMDLAPE 294

Query: 294 CDAANIEPVVLDINTTENKGIAIETE 319
             A    PV     T +N     + E
Sbjct: 295 EKADKSAPVEYTELTADNLAAVDQLE 320


>gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
 gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
          Length = 740

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 217/717 (30%), Positives = 374/717 (52%), Gaps = 72/717 (10%)

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAI-ETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
           ++ + +A   + V+L  +  E  G A+ + E     ++  +  ++LSD+ + ++     +
Sbjct: 64  SSTNNNALADQTVLLTDSIREAIGEAVTDMESGFSFSVNDNVLNALSDKLAALSPTGQVK 123

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG------SASFKIITDTM--- 399
                 L   S             +  ++ +  +K    G        +F I+TDT+   
Sbjct: 124 AAPSFNLSMRSTS-----------DLGEVDELFRKASDCGPGDKNNYVAFYILTDTVNKD 172

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D  + + + +++   + +         I+I +    + D  GK       LS L     +
Sbjct: 173 DTKYKEILGMSVCFNENE--------AIYIPVENFITADYLGKK------LSEL-----S 213

Query: 460 EHFLKIGHNIKYDKLVL-------HRYGISMRG-----------FEDIMLMSYVLDSGRS 501
                +  +IK    V          YG S +G             D ++ +Y+++  ++
Sbjct: 214 NSVSLVTFDIKESYRVFTPFEVSDRDYGYSCKGEHTEDYKSKPRCFDDLIAAYLVNPNKN 273

Query: 502 SHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            ++++ +A+++L  + +   ++   +     I +  D  V ++A + + V  +   L+  
Sbjct: 274 DYEVSDVAKEYLGLSLEKKIDLFGKK----SIREADDKSVVQYACKCAFVCFKAEPLICK 329

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           KL   ++L ++  ++ P+  V+  ME  GI   +D LK    ++   +  LE++IY+ +G
Sbjct: 330 KLEKLQMLDLFYNIEMPLSYVLYSMEKEGIIARRDELKAYGDKLQIRISELEKSIYEAAG 389

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
            +FN++SPKQLG+ILF +L  P+  KTK+G   +TA D+ +    D PI+ +ILE+R L+
Sbjct: 390 VEFNINSPKQLGEILFERLGLPAEKKTKSGY--STAADVLEKLAPDYPIVADILEYRGLA 447

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           K+KSTYAD L  +I +   R+HT ++   T TGR++S EPNLQNIP++T+LG+ IR+ F+
Sbjct: 448 KLKSTYADGLAAYIEEDG-RIHTSFNQTITATGRISSTEPNLQNIPMRTELGRLIRKVFV 506

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
                    ADYSQIELRILAH+++   L   +    DIH + A+++F V  E+V+P  R
Sbjct: 507 PKEDHVFADADYSQIELRILAHMSEDQELIAAYHEGKDIHGITASKVFHVPFEEVTPLQR 566

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R+AK +NF I+YGIS F L+  L I   EA +Y+ +YF  +PG+  Y E+     ++ GY
Sbjct: 567 RNAKAVNFGIVYGISSFGLSQDLSISVKEAKEYMDKYFETYPGVKAYQERVIADAKEKGY 626

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
             T+FGRR    E+ +    +R   ER A+NAPIQG+AADI + AMI+V+  L+  KL +
Sbjct: 627 SLTMFGRRRPIPELKASNYMMRQFGERVAMNAPIQGTAADIMKIAMINVYFRLKKEKLVS 686

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           K++LQIHDELV E  ++E    + ++   ME+A     +L VPL        +W E 
Sbjct: 687 KLILQIHDELVIETLKDEEEKVTALLTQEMERAA----DLSVPLLAECHSGTDWYEA 739


>gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL]
 gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL]
          Length = 850

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/625 (36%), Positives = 359/625 (57%), Gaps = 34/625 (5%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII---TDTMDAFHSKPIAIA 410
           +L+ L     N +   +I+   + +  +++L       F+ +   T+  D    K  +I+
Sbjct: 254 KLEDLRTKEWNKEKLYEILVQLEFKSIIKRLGLSEEVQFEFVQQLTNIHDVEQKKLESIS 313

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                +  D S           ++  + +T   T  + ++    +  ++E   KI +++K
Sbjct: 314 ---QIRSKDISLMFVPEEKCFYLYDKESNTVFVTRERHLIE---EILKSESV-KIVYDLK 366

Query: 471 YDKLVLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
                L+      +R  ED+M+ SYVLDS RSS+++ ++   +L+   + + K +K    
Sbjct: 367 NMFHELYLENTDNIRNCEDVMIASYVLDSTRSSYELETLFMSYLNTDLEAVKKDKK---- 422

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
                        + +  ++ +LW  L   + +     VY  +++P+I ++ +ME  G +
Sbjct: 423 -------------VTSVILLERLWDELSSLIDLNSCQFVYTNIERPLIPILYEMEKAGFK 469

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D+D L Q + EI   +L+LE+ IY ++GE FN++SPKQL  ILF KLK P   KTKTG 
Sbjct: 470 VDRDALLQYTKEIESKILNLEKQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTKTG- 528

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +    T 
Sbjct: 529 YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTGTA 587

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLAS +PNLQNIP+K D G+ IR+ FI      LI ADYSQIELRILAHI++   L  
Sbjct: 588 TGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLIN 647

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F+N++DIH   AAEIFGV+I+ V+P+MR  AK +NF I+YGIS + LA  ++I R EAA
Sbjct: 648 AFKNNVDIHSQTAAEIFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAA 707

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           ++I RYF R+P + EY++    F R+NGYV T+F R+ +  +INS   + R+  ER A+N
Sbjct: 708 EFINRYFERYPKVKEYLDNIVKFARENGYVLTLFNRKRYIKDINSTNRNTRSYAERIAMN 767

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           +PIQGSAADI + AMI V++ L+++ L  K++LQ+HDEL+ E P EE     +I+   ME
Sbjct: 768 SPIQGSAADIMKLAMIKVYQKLKENNLKAKIILQVHDELLIEAPYEEKDIVKRIVKTEME 827

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A    + L+VPL V +K   NW E
Sbjct: 828 NA----VALKVPLVVEVKEGLNWYE 848



 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 207/454 (45%), Gaps = 29/454 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L + DG+S +YRAF+A P L+   + +P NAI GF N++ K L+    +    + AV F
Sbjct: 2   KLVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFINVILKYLEQESPD----YVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    A  IP IE +G+EADD+I +  
Sbjct: 57  DKKGRQARKSEYEEYKANRKPMPDNLQVQIPYVREILYALNIPIIEFEGYEADDVIGSLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            + +     + II+ DKD +QL+            +D   E+    E+V +K+G+   ++
Sbjct: 117 NMFKNIDLDIVIITGDKDTLQLLDKNVVVKIVSTKFDKTTEDLYTAENVKEKYGVWANQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + 
Sbjct: 177 PDYKALVGDQSDNIPGVKGIGAKSAQKLLKEYSSLEEIYQNLDKIKGS-IREKLETGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D+P+ + LE L  ++ N  +L   L  LEF  +I R+  + +     +
Sbjct: 236 AFLSKRLATIVCDLPLNVKLEDLRTKEWNKEKLYEILVQLEFKSIIKRLGLSEEVQFEFV 295

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           + +    +  + K      E       K      + ++      ++    +F+ R + L 
Sbjct: 296 QQLTNIHDVEQKK-----LESISQIRSKDISLMFVPEEKCFYLYDKESNTVFVTRERHLI 350

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + ++S   + + K++                 + +T +  + + + IA   LD    
Sbjct: 351 EEILKSESVKIVYDLKNM------------FHELYLENTDNIRNCEDVMIASYVLDSTRS 398

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +          L+         K   +  +L  L
Sbjct: 399 SYELETLFMSYLNTDLEAVKKDKKVTSVILLERL 432


>gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
 gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
          Length = 888

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 216/585 (36%), Positives = 330/585 (56%), Gaps = 19/585 (3%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D +D        ++       ++        F+  +      S   + L +   + LK  
Sbjct: 313 DNLDELGQLTGEVSFYLEMPAENYHTSPFAGFVIGNEGHWFTSRDVDLLKE---APLKDL 369

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW--- 512
            +++   K   N K   + LHR GI +     D++L SY+L++  +S+D+  +AQ+    
Sbjct: 370 LQSDSVKKNVFNAKAQIVGLHRLGIPLENINFDLLLASYLLNTNDNSNDLGQVAQEHGYD 429

Query: 513 -LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +    +   K  K ++P D   D     H    +  I  L      KL   K   +Y  
Sbjct: 430 DVRTDEEVYGKGAKRAVPDD---DETFFSHLATKARAIEHLRKDFFAKLDENKQTPLYTD 486

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           ++ P+  V+++MEI G+ +D   LK + +++++ L  +E  IY  +GE+FN++S KQLG 
Sbjct: 487 IELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEFNINSTKQLGH 546

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           ILF KLK P   KTKTG   +TA D+ +     +PI++ ILE+RQ++K++STY   L   
Sbjct: 547 ILFEKLKLPVIKKTKTGY--STAVDVLEKLADKSPIVEQILEYRQIAKLQSTYITGLLKV 604

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADY 750
           I+   Q++HT Y    T TGRL+S++PNLQNIP++   G+ IR+AF+      ++ S+DY
Sbjct: 605 IHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIFSSDY 664

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSII 809
           SQ+ELR+LAHI     L + F+N  DIH   A  IF +  + ++   MRR AK +NF I+
Sbjct: 665 SQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIV 724

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YGIS + LA ++ + R+EA ++I+ YFH FPG+ +YI  T  F ++NGYVETI  RR + 
Sbjct: 725 YGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITHRRRYL 784

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            +I++   S R+  ER A+N PIQGSAADI + AMI +   LE   L  KMLLQIHDELV
Sbjct: 785 PDIHAKSFSKRSFAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELV 844

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           FE P+EEI   S+++   M+ A    + L VPLKV+ K  + W +
Sbjct: 845 FEAPKEEIPILSELVPKVMDSA----VKLDVPLKVDSKYGDTWYD 885



 Score =  317 bits (812), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 163/312 (52%), Gaps = 13/312 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DG+S ++RAF+A           DGL   AI GF  ML  +LQN + ++ 
Sbjct: 1   MTKQ--LLLIDGNSIVFRAFFAMHNQMDKFTNKDGLHTAAIYGFKLMLDHVLQNFKPDT- 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD   VTFR ++Y DYK  R K P  L  Q+P VR   +  G+ + E+  +EA
Sbjct: 58  ---ALVAFDAGKVTFRTKMYDDYKGGRNKTPNELTEQIPYVRELIKDSGLHSYELANYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+   I++ D+DL QL S  T +  T K     E     HV +K G
Sbjct: 115 DDIIGTLAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTPAHVEEKLG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ ++AL GDS DN PG+  IG KTA  L++++G++E +  +   +K+ K +E++
Sbjct: 175 ITPRQIIDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYDHIDDLKKSKMKEHL 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +E  E AR  + L  +  D P+ I L+ L  +      LI F K + F   + ++     
Sbjct: 235 IEDEEIARQCKTLATILRDAPLKIGLDDLQYQGPQTDDLIKFYKEMGFKSFLKKMDIDGA 294

Query: 294 CDAANIEPVVLD 305
            +    E   +D
Sbjct: 295 GEEDEAEIAPID 306


>gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002]
          Length = 850

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/628 (36%), Positives = 355/628 (56%), Gaps = 40/628 (6%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII---TDTMDAFHSKPIAIA 410
           +L+ L     N +   +I+   + +  +++L       F+ +   TD  D    +  +I+
Sbjct: 254 KLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSEVVQFEFVQQRTDIPDVEQKELESIS 313

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                +      + E  F         D              +++  +++   KI +++K
Sbjct: 314 QIRSKEIPLMFVQGEKCFY------LYDQESNTVFVTSNKLLIEEILKSDTV-KIVYDLK 366

Query: 471 YDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
               + H+  +     ++  ED+M+ SYVLDS RSS+++ ++   +L+   + + K +K 
Sbjct: 367 ---NIFHQLNLEDTNNIKNCEDVMIASYVLDSTRSSYELETLFVSYLNTEIEAVRKDKK- 422

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                           I +  ++ +LW  L   + +     +YE +++P+I V+ +ME T
Sbjct: 423 ----------------IVSVVLLKRLWDELLRLIDLNSCQFLYENIERPLIPVLYEMEKT 466

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   KTK
Sbjct: 467 GFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTK 526

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +   
Sbjct: 527 TG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQT 584

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++   
Sbjct: 585 GTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDER 644

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I R 
Sbjct: 645 LISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRK 704

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EAA++I RYF R+P + EYI+ T  F R NG+V T+F R+ +  +I S   ++R   ER 
Sbjct: 705 EAAEFINRYFERYPKVKEYIDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERI 764

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I+  
Sbjct: 765 AMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVKR 824

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME A    + L+VPL V +K   NW E
Sbjct: 825 EMENA----VTLKVPLVVEVKEGLNWYE 848



 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 106/292 (36%), Positives = 162/292 (55%), Gaps = 12/292 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L + DG+S +YRAF+A P L+  ++ +P NAI GF N++ K L+  + +    + AV F
Sbjct: 2   KLVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    AF IP IE +G+EADD+I +  
Sbjct: 57  DKKGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
              +  G  + II+ D+D +QL+            +D   E+   IE++ +K+G+   ++
Sbjct: 117 NQFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + 
Sbjct: 177 PDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKSS-IREKLEAGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           A LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  +
Sbjct: 236 AFLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287


>gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
 gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
          Length = 850

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/631 (36%), Positives = 353/631 (55%), Gaps = 46/631 (7%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII---TDTMDAFHSKPIAIA 410
           +L+ L     N     +I+   + +  +++L        + +   T+  D    K   I+
Sbjct: 254 KLEDLRTREWNKKRLYEILLQLEFKSIIKRLGLSEEVQVEFVQQLTNIHDVEQKKLEGIS 313

Query: 411 ------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
                 IS +   ++  F +             D         E    +++  ++E   K
Sbjct: 314 QIRSKDISLMFVPEEKCFYLY------------DQESNTVFVTEERHLVEEILKSESV-K 360

Query: 465 IGHNIKYDKLVLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           I +++K     L+      +R  ED+M+ SYVLDS RSS+++ ++   +L+     + K 
Sbjct: 361 IVYDLKNIFHELYLENTDNIRNCEDVMIASYVLDSTRSSYELETLFISYLNTDLAAVKKD 420

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
           +K                 + +  ++ +LW  L   + +     VY  +++P+I ++ +M
Sbjct: 421 KK-----------------VTSVILLKRLWDELSSLIDLNSCQFVYTNIERPLIPILYEM 463

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  G ++D+D L Q + EI   +L+LE+ IY ++GE FN++SPKQL  ILF KLK P   
Sbjct: 464 EKAGFKVDRDALLQYTKEIESKILNLEKQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTKTG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +
Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
               T TGRLAS +PNLQNIP+K D G+ IR+ FI      LI ADYSQIELRILAHI++
Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISE 641

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L   F+N++DIH   AAE+FGV+I+ V+P+MR  AK +NF I+YGIS + LA  ++I
Sbjct: 642 DERLINAFKNNVDIHSQTAAEVFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKI 701

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
            R EAA++I RYF R+P + EY++    F R NGYV T+F RR +  +I S   + RN  
Sbjct: 702 SRKEAAEFINRYFERYPKVKEYLDNIVKFARDNGYVLTLFNRRRYVKDIKSANRNARNYA 761

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I
Sbjct: 762 ERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEI 821

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +   ME A    + L+VPL V +K   NW E
Sbjct: 822 VKREMENA----VALKVPLVVEVKEGLNWYE 848



 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 107/313 (34%), Positives = 164/313 (52%), Gaps = 12/313 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L + DG+S +YRAF+A P L+   + +P NAI GF N++ K L+    +    + AV F
Sbjct: 2   KLVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFINVILKYLEQENPD----YVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    A  IP IE +G+EADD+I +  
Sbjct: 57  DKKGRQARKSEYEEYKANRKPMPDNLQVQIPYVREILYALNIPIIEFEGYEADDVIGSLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            + +     + II+ DKD +QL+            +D   E+    E+V +K+G+   ++
Sbjct: 117 NMFKNTDLDIVIITGDKDTLQLLDKNVVVKIVSTKFDKTTEDLYTAENVKEKYGVWANQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N + IK    RE +    + 
Sbjct: 177 PDYKALVGDQSDNIPGVKGIGAKSAQKLLEEYSSLEEIYQNLNNIKGS-IREKLEASKDI 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D+P+ I LE L   + N  RL   L  LEF  +I R+  + +     +
Sbjct: 236 AFLSKRLATIVCDLPLNIKLEDLRTREWNKKRLYEILLQLEFKSIIKRLGLSEEVQVEFV 295

Query: 300 EPVVLDINTTENK 312
           + +    +  + K
Sbjct: 296 QQLTNIHDVEQKK 308


>gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
 gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I
 gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/628 (36%), Positives = 355/628 (56%), Gaps = 40/628 (6%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII---TDTMDAFHSKPIAIA 410
           +L+ L     N +   +I+   + +  +++L       F+ +   TD  D    +  +I+
Sbjct: 254 KLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSEVVQFEFVQQRTDIPDVEQKELESIS 313

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                +      + E  F         D              +++  +++   KI +++K
Sbjct: 314 QIRSKEIPLMFVQGEKCFY------LYDQESNTVFITSNKLLIEEILKSDTV-KIMYDLK 366

Query: 471 YDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
               + H+  +     ++  ED+M+ SYVLDS RSS+++ ++   +L+   + + K +K 
Sbjct: 367 ---NIFHQLNLEDTNNIKNCEDVMIASYVLDSTRSSYELETLFVSYLNTDIEAVKKDKK- 422

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                           I +  ++ +LW  L   + +     +YE +++P+I V+ +ME T
Sbjct: 423 ----------------IVSVVLLKRLWDELLRLIDLNSCQFLYENIERPLIPVLYEMEKT 466

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   KTK
Sbjct: 467 GFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTK 526

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +   
Sbjct: 527 TG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQT 584

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++   
Sbjct: 585 GTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDER 644

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I R 
Sbjct: 645 LISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRK 704

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EAA++I +YF R+P + EY++ T  F R NG+V T+F R+ +  +I S   ++R   ER 
Sbjct: 705 EAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERI 764

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I+  
Sbjct: 765 AMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVKR 824

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME A    + L+VPL V +K   NW E
Sbjct: 825 EMENA----VALKVPLVVEVKEGLNWYE 848



 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 106/292 (36%), Positives = 162/292 (55%), Gaps = 12/292 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L + DG+S +YRAF+A P L+  ++ +P NAI GF N++ K L+  + +    + AV F
Sbjct: 2   KLVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    AF IP IE +G+EADD+I +  
Sbjct: 57  DKRGREARKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
              +  G  + II+ D+D +QL+            +D   E+   +E+V +K+G+   ++
Sbjct: 117 NQFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDKTVEDLYTVENVKEKYGVWANQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + 
Sbjct: 177 PDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKSS-IREKLEAGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           A LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  +
Sbjct: 236 AFLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287


>gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 583

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 212/604 (35%), Positives = 327/604 (54%), Gaps = 46/604 (7%)

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
           T  ++   +  + I     +Q  D +      +I +         G     +++L  L+ 
Sbjct: 1   TTDLNPRQADLVGIGCCWGNQPTDIA------YIPIGHKQ-----GNQLKKQKVLDSLRT 49

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL- 513
             E++++ K+  N K+D+L+    GI++ G   D ML SYVL   +S H ++ + +++L 
Sbjct: 50  ILESKNYPKVFQNTKFDRLIFKHQGINLDGVVFDTMLASYVLHPEKS-HKLSELCEQYLE 108

Query: 514 ---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVY 569
              S   KE+   +K    I  +   +V E+   ++     L   L+ +L     L  + 
Sbjct: 109 GITSQNYKELGIGKKQ--TIADLEIDKVAEYCGMDAYATFLLVEPLKNELKQVSSLEKLL 166

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             +++P+  V+S ME TGI ID + L ++S ++ K+LL LEE  Y+++G KFNL SPKQL
Sbjct: 167 LEVEQPLEAVLSIMEDTGILIDTEYLGELSKQLEKDLLILEEKAYEVAGGKFNLGSPKQL 226

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           G+ILF KL+       KT    +T         GD+PII  ILE+R LSK+KSTY D+LP
Sbjct: 227 GEILFEKLELNRKKSRKTKTGYSTDHATLDKLKGDHPIIDYILEYRTLSKLKSTYIDALP 286

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
             ++ +T+R+HT ++ + T TGRL+S  PNLQNIPI+T+  ++IR+AFI      L+SAD
Sbjct: 287 ELVDTKTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSAD 346

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELRILAH+++   L   ++N+ D+H + A  +F    EK++ Q R   KTINF +I
Sbjct: 347 YSQIELRILAHLSQEPVLLNAYQNTEDVHTVTAKLLF--EKEKITSQERNLGKTINFGVI 404

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+   R A +  +  +E  ++I +Y  R+  + EY+E  K     NGYV TI GRR ++
Sbjct: 405 YGMGSQRFAREAGVTAAEGKEFINKYRQRYAKVFEYLESMKKEAIANGYVTTILGRRRYF 464

Query: 870 DEINSPKSSIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSL 911
           +  +      R  +                   RAA NAPIQGS+ADI + AM+ + + L
Sbjct: 465 NFFDDNLYRFRGHDPQTIDLNQLNINYNDSQLLRAAANAPIQGSSADIIKIAMVKIQEIL 524

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
             +     +LLQ+HDELVFE+P +E       I  +ME A    + L +PL V I    N
Sbjct: 525 --NHCQANLLLQVHDELVFEIPVKEWEKLENKIKETMENA----VKLTIPLVVEIHAGKN 578

Query: 972 WQEE 975
           W E 
Sbjct: 579 WMEA 582


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/725 (31%), Positives = 374/725 (51%), Gaps = 27/725 (3%)

Query: 263 ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDR 322
            +E+ +   +   L+  E T            D ++  P + +I       +  E     
Sbjct: 155 QMEEFDEKAV---LERYEITPQQFVDLKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVE 211

Query: 323 DTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK----------IV 372
           +     S+ S    +T + N E       L  + +     I+ + Y            + 
Sbjct: 212 NLLENISKLSGKIKETIEANRELAVMSKRLATINRNIPLEIDFEEYRLKEFNYKKLWDLF 271

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           N  +    +  ++  G      +  ++  +    I      L+   + +F       D+ 
Sbjct: 272 NKLEFYSLLDSIKKEGEEVIPTV--SIRKWEKVDIKEVPRLLESAKNVAFYPLIYEGDVK 329

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIML 491
                          E L  L++ FE E    + H IK   + L   GI  +  + D  +
Sbjct: 330 KIAFSFDGTTLYSDVERLEDLREIFEREDCEFVSHEIKDFLVKLSYKGIECKSKYLDTAI 389

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
           M+Y+L+   S++D+  + +K+L       +E+    K     +++S+  + E+     N 
Sbjct: 390 MAYLLNPSESNYDLDRVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCNH 449

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           + +L   L   +    +  +   ++ P+++V+  ME+ G  +D+++LK++S +I + +  
Sbjct: 450 LFELKDKLMSFIEEMDMKKLLLEIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISE 509

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           + + IY  +G +FN++SPKQLG+ LF KL  P   KTKTG + T ++ LEQ+    N I+
Sbjct: 510 ILDKIYKEAGYQFNVNSPKQLGEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLTAY-NDIV 567

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
             I+E+RQL+K+KSTY +     +++   RVH+ +      TGR++S EPNLQNIP++ +
Sbjct: 568 SEIIEYRQLTKLKSTYIEGFLPLMDE-NDRVHSNFKQMVAATGRISSTEPNLQNIPVREE 626

Query: 729 LGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            G++IRRAFI       ++SADYSQIELR+LAH+++   L + F N+ DIH   A+E+F 
Sbjct: 627 FGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFK 686

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V  + V+P+MRR AK +NF IIYGIS + LA  L+I R EA +YI  YF ++ G+ EYIE
Sbjct: 687 VPPQNVTPEMRRAAKVVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIE 746

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           K   F ++NGYV TI  RR +  EINS   + R+  ER A+N PIQGSAADI + AM+ V
Sbjct: 747 KVIRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKV 806

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           ++  +   L ++++LQ+HDELV +  ++E+    +I+  +ME      I L+VPL V I 
Sbjct: 807 YQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENV----IKLKVPLVVEIG 862

Query: 968 VSNNW 972
           V  NW
Sbjct: 863 VGPNW 867



 Score =  333 bits (855), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 110/289 (38%), Positives = 175/289 (60%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              L+DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KLL+  + +    + A+ F
Sbjct: 3   KFLLIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLLEEEKPD----YVAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ + +YKA R  +PE L  Q+ L++     F I  +E++G+EADDII T +
Sbjct: 58  DKKAPTFRHKEFKEYKATRQAMPEELSEQVELLKEVIDGFNIKTLELEGYEADDIIGTVS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE++G  V I++ D+D +QL+SP   +  + K     E+ D + V++++ I P++ V 
Sbjct: 118 KMAEEKGMEVVIVTGDRDALQLISPRVKVKISKKGITQMEEFDEKAVLERYEITPQQFVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPGIP IG KTA  LL+E+G++EN+L N S++   K +E I    E A 
Sbjct: 178 LKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLENISKLSG-KIKETIEANRELAV 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +S++L  +  ++P+ I  E   L++ N  +L      LEF  L++ +  
Sbjct: 237 MSKRLATINRNIPLEIDFEEYRLKEFNYKKLWDLFNKLEFYSLLDSIKK 285


>gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 635

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 204/530 (38%), Positives = 321/530 (60%), Gaps = 12/530 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506
           E L  L+K FE E    + H IK   + L   GI  +  + D  +M+Y+L+   S++D+ 
Sbjct: 109 ERLEDLRKIFEREDAEFVSHEIKDFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDLE 168

Query: 507 SIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            + +K+L       +E+    K     +++S+  + E+     + + +L   L   +   
Sbjct: 169 RVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEEM 228

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +  +   ++ P+++V+  ME+ G  +D+++LK++S +I + +  + + IY  +G +FN+
Sbjct: 229 DMKKLLLEIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQFNV 288

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG+ LF KL  P   KTKTG + T ++ LEQ+    N I+  I+E+RQL+K+KST
Sbjct: 289 NSPKQLGEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLTAY-NDIVSEIIEYRQLTKLKST 346

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PT 742
           Y +     +++   RVH+ +      TGR++S EPNLQNIP++ + G++IRRAFI     
Sbjct: 347 YIEGFLPLMDE-NDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKD 405

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             ++SADYSQIELR+LAH+++   L + F N+ DIH   A+E+F V  + V+P+MRR AK
Sbjct: 406 GYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAK 465

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF IIYGIS + LA  L+I R EA +YI  YF ++ G+ EYIEK   F ++NGYV TI
Sbjct: 466 VVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTI 525

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR +  EINS   + R+  ER A+N PIQGSAADI + AM+ V++  +   L ++++L
Sbjct: 526 MNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLIL 585

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           Q+HDELV +  ++E+    +I+  SME      I L+VPL V I V  NW
Sbjct: 586 QVHDELVVDTYKDELELVKEILKESMENV----IKLKVPLVVEIGVGPNW 631



 Score = 48.5 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +S++L  +  ++P+ I  E   L++ N  +L      LEF  L++ +  
Sbjct: 1   MSKRLATINRNIPLEIDFEEYRLKEFNYKKLWDLFNKLEFYSLLDSIKK 49


>gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 850

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/629 (36%), Positives = 358/629 (56%), Gaps = 42/629 (6%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII---TDTMDAFHSKPIAIA 410
           +L+ L     N +   +I+   + +  +++L       F+ +   TD  D    +  +I+
Sbjct: 254 KLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSEVVQFEFVQQRTDIPDVEQKELESIS 313

Query: 411 -ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
            I T +         +  ++      +   T    L +EIL            +KI +++
Sbjct: 314 QIRTKEIPLMFVPDEQCFYLYDQESNTVFVTRDGHLVEEILK--------SDTVKIVYDL 365

Query: 470 KYDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           K    + H+  +     ++  ED+M+ SYVLDS RSS+++ ++   +L+   + + K +K
Sbjct: 366 K---NIFHQLNLEDTDNIKNCEDVMIASYVLDSTRSSYELETLFVSYLNTDIEAVRKDKK 422

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
                            I +  ++ +LW  L   + +     +YE +++P+I V+ +ME 
Sbjct: 423 -----------------IVSVVLLKRLWDELLRLIDLNSCKFLYENIERPLIPVLYEMEK 465

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   KT
Sbjct: 466 TGFKVDRDALLQYTKEIESKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKT 525

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           KTG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +  
Sbjct: 526 KTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQ 583

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
             T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++  
Sbjct: 584 TGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDE 643

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I R
Sbjct: 644 RLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIVYGISDYGLARDVKISR 703

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EAA++I +YF R+P + EY++ T  F R NG+V T+F R+ +  +I S   ++R   ER
Sbjct: 704 KEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYVKDIKSTNRNLRGYAER 763

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I+ 
Sbjct: 764 IAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRIVK 823

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ME A    + L+VPL V +K   NW E
Sbjct: 824 REMENA----VALKVPLVVEVKEGLNWYE 848



 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 130/454 (28%), Positives = 212/454 (46%), Gaps = 29/454 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L + DG+S +YRAF+A P L+  ++ +P NAI GF N++ K L+  + +    + AV F
Sbjct: 2   KLVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    AF IP +E +G+EADD+I +  
Sbjct: 57  DKRGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYAFNIPIVEFEGYEADDVIGSLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
              +  G  + II+ D+D +QL+            +D   E+   IE++ +K+G+   ++
Sbjct: 117 NQFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + 
Sbjct: 177 PDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKGS-IREKLEAGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  +       +
Sbjct: 236 AFLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSEVVQFEFV 295

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +    DI   E K    E E       K      + D+      +Q    +F+ R   L 
Sbjct: 296 QQRT-DIPDVEQK----ELESISQIRTKEIPLMFVPDEQCFYLYDQESNTVFVTRDGHLV 350

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + +D+   + + K+I   +             + DT +  + + + IA   LD    
Sbjct: 351 EEILKSDTVKIVYDLKNIFHQLN------------LEDTDNIKNCEDVMIASYVLDSTRS 398

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +          L+         K  ++  +L  L
Sbjct: 399 SYELETLFVSYLNTDIEAVRKDKKIVSVVLLKRL 432


>gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896]
          Length = 872

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 193/533 (36%), Positives = 321/533 (60%), Gaps = 11/533 (2%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
           +E +  LK+  E E+    G+N+K +   L  YGI++     D  L  Y+L+      + 
Sbjct: 344 EENIPKLKELLERENVFIYGNNLKREYTALKPYGITLPKISFDSQLAQYILNPSEVEQEP 403

Query: 506 ASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
             I  K+    +S   +++L   K  +     +  Q+ E+  +   +I      +   + 
Sbjct: 404 EKIGIKYGMPIVSPNLEDLLGKGKKRMSFSMANRVQMDEYFAKILAIISHCKTKMLDMIQ 463

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            E    ++E+++ P++ V+ +ME  GI +++D+L ++  E +K ++  E+ IYDL+GE+F
Sbjct: 464 EEDTKFLFEKIELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQYEQEIYDLAGEEF 523

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++SPKQLG +LF KL+ P   KTKTG   +T  ++ +     +PII  IL +RQ+SK++
Sbjct: 524 NINSPKQLGVVLFEKLQLPVIKKTKTGY--STGAEILEKLYDKHPIISKILSYRQVSKLQ 581

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY   L + IN  ++R+H+ ++   T TGR++SLEPNLQNIP++T++G+++R+ F++  
Sbjct: 582 STYVIGLLSLINPTSKRIHSTFNQTLTTTGRISSLEPNLQNIPVRTEMGRELRKVFVAKE 641

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+ ADYSQIELR+LAH+A+   + + F  S+DIH   A+E+F V +E+V+ ++R  A
Sbjct: 642 GYVLVDADYSQIELRVLAHMAQEKKMIEGFHGSMDIHTKTASEVFSVPVEEVTKELRSAA 701

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +NF I+YGIS F L+  L I + +A +YI  YF R+PGI  Y++     V + GY  T
Sbjct: 702 KAVNFGIVYGISDFGLSNNLNITKKQAKEYIDLYFARYPGIKTYMDTIVKEVEELGYSTT 761

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           + GRR +  EI S    ++N+ +R A+N PIQGSAADI + AM  V + L+  K+  +++
Sbjct: 762 LCGRRRYIPEIKSSNFIVKNMGKRLAMNTPIQGSAADIIKIAMNRVFEWLKTEKIDAELV 821

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           LQ+HDEL+ EV E++       ++  ME A     ++ VPLKV+  + ++W E
Sbjct: 822 LQVHDELLLEVREDDAKYVRDKVIELMEGA----WSMDVPLKVDATIGDSWYE 870



 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 105/289 (36%), Positives = 161/289 (55%), Gaps = 10/289 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LFL+DG+S I RA+YA P L  K DGL  NAI GF  M +K +     E    + +V 
Sbjct: 2   KRLFLIDGNSLINRAYYALPPLMTK-DGLYTNAIYGFLMMFYKAMD----EYAPDYVSVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR++ Y DYK  R  +P  L  Q+  ++      G+   EI+GFEADDII T 
Sbjct: 57  FDLKGPTFRHKEYKDYKGTRKGMPPELAMQIQPLKELLDTMGVHRAEIEGFEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           + I E E   V I++ D+D +QL S TT +  T K     E  D + V +++ + P++ +
Sbjct: 117 SKIGEDENLEVFILTGDRDALQLASKTTKILFTKKGISDLEVYDEDKVKERYELTPKQFI 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+ L GDS DNIPG+ GIG KT   LL+EY ++EN++++   +K    +  +    E+A
Sbjct: 177 DLKGLMGDSSDNIPGVAGIGEKTGIKLLKEYDSIENLILHIDELKGA-VKTKMEAGYESA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            +S++L  +   +P+   L+ L+ E  +G +L S      FT L++++ 
Sbjct: 236 VMSKRLATIVRVIPVEFSLDELLYEKKSGEQLRSLFMKYGFTSLMSKLE 284


>gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108]
 gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108]
          Length = 850

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/628 (35%), Positives = 354/628 (56%), Gaps = 40/628 (6%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII---TDTMDAFHSKPIAIA 410
            L+ L     N +   +I+   + +  +++L    +  F+ +   TD  D    +  +I+
Sbjct: 254 NLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSENIQFEFVQQRTDIPDVEQRELESIS 313

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                 +  +         D       D              +++  +++   KI +++K
Sbjct: 314 ------RIRSKEIPLMFVQDEKCFYLYDQESNTVFVTRDRHLVEEILKSDTV-KIVYDLK 366

Query: 471 YDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
               + H+  +     ++  ED+M+ SYVLDS RSS+++ ++   +L+   + + K +K 
Sbjct: 367 ---NIFHQLNLEDTDNIKNCEDVMIASYVLDSTRSSYELETLFVSYLNTDIEAVKKDKK- 422

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                           + +  ++ +LW  L   + +     +YE +++P+I V+ +ME T
Sbjct: 423 ----------------MVSVVLLKRLWDDLLRLIDLNSCQFLYENIERPLIPVLYEMEKT 466

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   KTK
Sbjct: 467 GFKVDRDALLQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTK 526

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +   
Sbjct: 527 TG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQT 584

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++   
Sbjct: 585 GTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDER 644

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I R 
Sbjct: 645 LINAFKNNIDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRK 704

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EAA++I +YF R+P + EY++    F R+NGYV T+F R+ +  +I S   + R+  ER 
Sbjct: 705 EAAEFINKYFERYPKVKEYLDNIVRFARENGYVLTLFNRKRYVKDIKSANRNARSYAERI 764

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I+  
Sbjct: 765 AMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRIVKR 824

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME A    + L+VPL V +K   NW E
Sbjct: 825 EMENA----VALKVPLVVEVKEGLNWYE 848



 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 212/454 (46%), Gaps = 29/454 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L + DG+S +YRAF+A P L+   + +P NAI GF N++ K L+  + +    + AV F
Sbjct: 2   KLVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFINVILKYLEQEKPD----YIAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    A  IP +E +G+EADD+I +  
Sbjct: 57  DKRGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYALNIPIVEFEGYEADDVIGSLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
              +  G  + II+ D+D +QL+            +D   E+   IE++ +K+G+   ++
Sbjct: 117 NKFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + 
Sbjct: 177 PDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKGS-IREKLEAGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  + +     +
Sbjct: 236 AFLSKRLATIVCDLPLNVNLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSENIQFEFV 295

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +    DI   E +    E E       K      + D+      +Q    +F+ R + L 
Sbjct: 296 QQRT-DIPDVEQR----ELESISRIRSKEIPLMFVQDEKCFYLYDQESNTVFVTRDRHLV 350

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + +D+   + + K+I   +             + DT +  + + + IA   LD    
Sbjct: 351 EEILKSDTVKIVYDLKNIFHQLN------------LEDTDNIKNCEDVMIASYVLDSTRS 398

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +          L+         K  ++  +L  L
Sbjct: 399 SYELETLFVSYLNTDIEAVKKDKKMVSVVLLKRL 432


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 202/530 (38%), Positives = 322/530 (60%), Gaps = 12/530 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506
           E L  L+K FE E    + H IK   + L   GI  +  + D  +M+Y+L+   S++D+ 
Sbjct: 345 ERLEDLRKIFEREDAEFVSHEIKDFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDLE 404

Query: 507 SIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            + +++L     + +E+    K     +++S+  + E+     + + +L   L   +   
Sbjct: 405 RVLKRYLKVDILSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEEM 464

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +  +   ++ P+++V+  ME+ G  +D+++LK++S +I + +  + + IY  +G +FN+
Sbjct: 465 DMKKLLLEIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQFNV 524

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG+ LF KL  P   KTKTG + T ++ LEQ+    N I+  I+E+RQL+K+KST
Sbjct: 525 NSPKQLGEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLTAY-NDIVSEIIEYRQLTKLKST 582

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PT 742
           Y +     +++   RVH+ +      TGR++S EPNLQNIP++ + G++IRRAFI     
Sbjct: 583 YIEGFLPLMDE-NDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKD 641

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             ++SADYSQIELR+LAH+++   L + F N+ DIH   A+E+F V  + V+P+MRR AK
Sbjct: 642 GYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAK 701

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF IIYGIS + LA  L+I R EA +YI  YF ++ G+ EYIEK   F ++NGYV TI
Sbjct: 702 VVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTI 761

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR +  EINS   + R+  ER A+N PIQGSAADI + AM+ V++  +   L ++++L
Sbjct: 762 MNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLIL 821

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           Q+HDELV +  ++E+    +I+  +ME      I L+VPL V I V  NW
Sbjct: 822 QVHDELVVDTYKDELELVKEILKENMENV----IKLKVPLVVEIGVGPNW 867



 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 110/289 (38%), Positives = 175/289 (60%), Gaps = 10/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              L+DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KLL+  + +    + A+ F
Sbjct: 3   KFLLIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLLEEEKPD----YVAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ + +YKA R  +PE L  Q+ L++     F I  +E++G+EADDII T +
Sbjct: 58  DKKAPTFRHKEFKEYKATRQAMPEELSEQVELLKEVIDGFNIKTLELEGYEADDIIGTVS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE++G  V I++ D+D +QL+SP   +  + K     E+ D + V++++ I P++ V 
Sbjct: 118 KMAEEKGMEVVIVTGDRDALQLISPRVKVKISKKGITQMEEFDEKAVLERYEITPQQFVD 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPGIP IG KTA  LL+E+G++EN+L N S++   K +E I    E A 
Sbjct: 178 LKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLENISKLSG-KIKETIEANRELAV 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +S++L  +  ++P+ I  E   L++ N  +L      LEF  L++ +  
Sbjct: 237 MSKRLATINRNIPLEIDFEEYRLKEFNYKKLWDLFNKLEFYSLLDSIKK 285


>gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
          Length = 850

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/628 (36%), Positives = 357/628 (56%), Gaps = 40/628 (6%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII---TDTMDAFHSKPIAIA 410
           +L+ L     N +   +I+   + +  +++L       F+ +   TD  D    +  +I+
Sbjct: 254 KLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSEVVQFEFVQQQTDIPDVEQKELESIS 313

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                     S ++  +F+             NT+      +L +       +KI +++K
Sbjct: 314 -------QIRSKEIPLMFVPDEKCFYLYDQESNTVFVTRDRHLVEEILKSDTVKIVYDLK 366

Query: 471 YDKLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
               + H+  +    +++  ED+M+ SYVLDS R S+++ ++   +L+   + + K +K 
Sbjct: 367 ---NIFHQLNLKDTDNIKNCEDVMIASYVLDSTRGSYELETLFVSYLNTDIEAVRKDKK- 422

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                           I +  ++ +LW  L   + +     +YE +++P+I V+ +ME T
Sbjct: 423 ----------------IVSVVLLKRLWDELLRLIDLNSCKFLYENIERPLIPVLYEMEKT 466

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   KTK
Sbjct: 467 GFKVDRDALLQYTKEIESKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTK 526

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +   
Sbjct: 527 TG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQT 584

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++   
Sbjct: 585 GTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDER 644

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I R 
Sbjct: 645 LISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIVYGISDYGLARDVKISRK 704

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EAA++I +YF R+P + EY++ T  F R NG+V T+F R+ +  +I S   ++R   ER 
Sbjct: 705 EAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYVKDIKSTNRNLRGYAERI 764

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I+  
Sbjct: 765 AMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRIVKR 824

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME A    + L+VPL V +K   NW E
Sbjct: 825 EMENA----VALKVPLVVEVKEGLNWYE 848



 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 130/454 (28%), Positives = 213/454 (46%), Gaps = 29/454 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L + DG+S +YRAF+A P L+  ++ +P NAI GF N++ K L+  + +    + AV F
Sbjct: 2   KLVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    AF IP +E +G+EADD+I +  
Sbjct: 57  DKRGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYAFNIPIVEFEGYEADDVIGSLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
              +  G  + II+ D+D +QL+            +D   E+   IE++ +K+G+   ++
Sbjct: 117 NQFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + 
Sbjct: 177 PDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKGS-IREKLEAGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  +       +
Sbjct: 236 AFLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSEVVQFEFV 295

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           +    DI   E K    E E       K      + D+      +Q    +F+ R + L 
Sbjct: 296 QQQT-DIPDVEQK----ELESISQIRSKEIPLMFVPDEKCFYLYDQESNTVFVTRDRHLV 350

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + +D+   + + K+I   +             + DT +  + + + IA   LD    
Sbjct: 351 EEILKSDTVKIVYDLKNIFHQLN------------LKDTDNIKNCEDVMIASYVLDSTRG 398

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +          L+         K  ++  +L  L
Sbjct: 399 SYELETLFVSYLNTDIEAVRKDKKIVSVVLLKRL 432


>gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/628 (35%), Positives = 354/628 (56%), Gaps = 40/628 (6%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII---TDTMDAFHSKPIAIA 410
           +L+ L     N +   +I+   + +  +++L       F+ +   TD  D    +  +I+
Sbjct: 254 KLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSEVVQFEFVQQRTDIPDVEQKELESIS 313

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                +      + E  F         D              +++  +++   KI +++K
Sbjct: 314 QIRSKEIPLMFVQGEKCFY------LYDQESNTVFITSNKLLIEEILKSDTV-KIMYDLK 366

Query: 471 YDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
               + H+  +     ++  ED+M+ SYVLDS RSS+++ ++   +L+   + + K +K 
Sbjct: 367 ---NIFHQLNLEDTNNIKNCEDVMIASYVLDSTRSSYELETLFVSYLNTDIEAVKKDKK- 422

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                           I +  ++ +LW  L   + +     +YE +++P+I V+ +ME T
Sbjct: 423 ----------------IVSVVLLKRLWDELLRLIDLNSCQFLYESIERPLIPVLYEMEKT 466

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G ++D+D L Q + EI   +L LE  IY ++GE FN++SPKQL  ILF KLK P   KTK
Sbjct: 467 GFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTK 526

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           TG + T A+ LE++    + I+  IL++R  +KI +TY   L   IN  + RVHT +   
Sbjct: 527 TG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQT 584

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T TGRLAS +PNLQNIP+K D G+ IR+ F+      LI ADYSQIELRILAHI++   
Sbjct: 585 GTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDER 644

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           L   F+N++DIH   AAE+FGV+I  V+P+MR  AK +NF I+YGIS + LA  ++I R 
Sbjct: 645 LISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRK 704

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EAA++I +YF R+P + EY++ T  F R NG+V T+F R+ +  +I S   ++R   ER 
Sbjct: 705 EAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERI 764

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N+PIQGS ADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE     +I+  
Sbjct: 765 AMNSPIQGSPADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVKR 824

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ME A    + L+VPL V +K   NW E
Sbjct: 825 EMENA----VRLKVPLVVEVKEGLNWYE 848



 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 106/292 (36%), Positives = 162/292 (55%), Gaps = 12/292 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L + DG+S +YRAF+A P L+  ++ +P NAI GF N++ K L+  + +    + AV F
Sbjct: 2   KLVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    AF IP IE +G+EADD+I +  
Sbjct: 57  DKRGREARKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
              +  G  + II+ D+D +QL+            +D   E+   +E+V +K+G+   ++
Sbjct: 117 NQFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDKTVEDLYTVENVKEKYGVWANQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              +AL GD  DNIPG+ GIG K+A  LL+EY +LE I  N  +IK    RE +    + 
Sbjct: 177 PDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKSS-IREKLEAGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           A LS++L  +  D+P+ + LE L  ++ N  RL   L  LEF  +I R+  +
Sbjct: 236 AFLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287


>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/529 (41%), Positives = 323/529 (61%), Gaps = 32/529 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIA 506
             +K     +   K+ +++K    +LH+        ++   D+ML SYVLDS RSS+D+ 
Sbjct: 346 EAIKDLLTLQSIQKVVYDLK---NILHKVDFDEANQIKNCNDVMLASYVLDSTRSSYDLE 402

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL-WLLLRPKLIVEKL 565
           ++   +L+                     + ++E+    + V+L+  W  L   + +   
Sbjct: 403 TLFISYLNT------------------DIAAIKENRWAGATVLLRNLWDELSKLIDLNSA 444

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
            +VYE ++ P++ ++ +ME  G ++D++ L++ + EI   LL LE  IY ++GE FN++S
Sbjct: 445 QYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWFNINS 504

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQL  ILF KLK P   KTKTG + T A+ LE++    + II  IL++R  +KI +TY 
Sbjct: 505 PKQLSYILFEKLKLPVVKKTKTG-YSTDAEVLEEL-YDKHDIIPLILDYRMYTKILTTYC 562

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
             L   IN  T R+HT +    T TGRLAS EPNLQNIP+K D G+ IR+AF+      L
Sbjct: 563 QGLVQAINPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVL 622

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           I ADYSQIELRILAHI++   L   F+N+LDIH   AAEIFGV+I +V+P MR  AK +N
Sbjct: 623 IDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVN 682

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  ++I R EAA++I RYF ++P + EY++    F R+NG+V TIF R
Sbjct: 683 FGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPRVKEYLDNVVKFARENGFVLTIFNR 742

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           + +  +I S   ++RN  ER A+N+PIQGSAADI + AMI V+K L+++ L ++++LQ+H
Sbjct: 743 KRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVH 802

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+ E P EE     +I+   ME A L    L+VPL V +K  +NW E
Sbjct: 803 DELLIESPYEEKEIVKEIVKSEMENAVL----LKVPLVVEVKEGSNWYE 847



 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 108/317 (34%), Positives = 170/317 (53%), Gaps = 12/317 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              + DG+S +YRAF+A P L+    G+P NAI GF N+L K L + + +    + AV F
Sbjct: 2   KFVIFDGNSILYRAFFALPQLTT-STGIPTNAIYGFLNVLLKYLDSEKPD----YVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    A  IP ++ +G+EADD+I T  
Sbjct: 57  DKKGRAVRKSEYEEYKANRKPMPDSLQVQIPYVREILAALNIPVLKCEGYEADDVIGTLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
              + +   + II+ D+D +QL+            +D   E+   +E+V +K+G+   ++
Sbjct: 117 NRFKAQDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTEDLYTVENVKEKYGVFAHQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V  +AL GD+ DNIPG+ GIG KTA  LL+EY  LENI  N + IK    +E +    + 
Sbjct: 177 VDYKALVGDASDNIPGVKGIGDKTAIKLLEEYQTLENIYQNLNNIKGA-LKEKLESGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D+PI + LE L  ++ +  RL   L  LEF   I R+  + + + A  
Sbjct: 236 AFLSKRLATIICDLPIEVNLEELKTKEWDKERLYQILLQLEFKSFIKRLGFSEEINYARQ 295

Query: 300 EPVVLDINTTENKGIAI 316
              + + +  E + ++ 
Sbjct: 296 NFQLPEFSIKELRDVSA 312


>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/529 (41%), Positives = 323/529 (61%), Gaps = 32/529 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIA 506
             +K     +   K+ +++K    +LH+        ++   D+ML SYVLDS RSS+D+ 
Sbjct: 346 KAIKDLLTLQSIQKVVYDLK---NILHKVDFDEANQIKNCNDVMLASYVLDSTRSSYDLE 402

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL-WLLLRPKLIVEKL 565
           ++   +L+                     + ++E+    + V+L+  W  L   + +   
Sbjct: 403 TLFISYLNT------------------DIAAIKENRWAGATVLLRNLWDELSKLIDLNSA 444

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
            +VYE ++ P++ ++ +ME  G ++D++ L++ + EI   LL LE  IY ++GE FN++S
Sbjct: 445 QYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWFNINS 504

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQL  ILF KLK P   KTKTG + T A+ LE++    + II  IL++R  +KI +TY 
Sbjct: 505 PKQLSYILFEKLKLPVVKKTKTG-YSTDAEVLEEL-YDKHDIIPLILDYRMYTKILTTYC 562

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
             L   IN  T R+HT +    T TGRLAS EPNLQNIP+K D G+ IR+AF+      L
Sbjct: 563 QGLVQAINPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVL 622

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           I ADYSQIELRILAHI++   L   F+N+LDIH   AAEIFGV+I +V+P MR  AK +N
Sbjct: 623 IDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVN 682

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  ++I R EAA++I RYF ++P + EY++    F R+NG+V TIF R
Sbjct: 683 FGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTIFNR 742

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           + +  +I S   ++RN  ER A+N+PIQGSAADI + AMI V+K L+++ L ++++LQ+H
Sbjct: 743 KRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVH 802

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+ E P EE     +I+   ME A L    L+VPL V +K  +NW E
Sbjct: 803 DELLIESPYEEKEIVKEIVKSEMENAVL----LKVPLVVEVKEGSNWYE 847



 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 108/317 (34%), Positives = 168/317 (52%), Gaps = 12/317 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              + DG+S +YRAF+A P L+    G+P NAI GF N+L K L + + +    +  V F
Sbjct: 2   KFVIFDGNSILYRAFFALPQLTT-STGIPTNAIYGFLNVLLKYLDSEKPD----YVTVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    A  IP +E +G+EADD+I T  
Sbjct: 57  DKKGRAVRKSEYEEYKANRKPMPDSLQVQIPYVREILAALNIPVLECEGYEADDVIGTLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
              +     + II+ D+D +QL+            +D   E+   +E+V +K+G+   ++
Sbjct: 117 NRFKALDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTEDLYTVENVKEKYGVFAHQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V  +AL GD+ DNIPG+ GIG KTA  LL+EY  LENI  N + IK    +E +    + 
Sbjct: 177 VDYKALVGDASDNIPGVKGIGDKTAIKLLEEYQTLENIYQNLNNIKGA-LKEKLESGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D+PI + LE L  ++ +  RL   L  LEF   I R+  + + + A  
Sbjct: 236 AFLSKRLATIICDLPIEVNLEELKTKEWDKERLYQILLQLEFKSFIKRLGFSEEINYARQ 295

Query: 300 EPVVLDINTTENKGIAI 316
              + + +  E + ++ 
Sbjct: 296 NFQLPEFSIKELRNVSA 312


>gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 168/622 (27%), Positives = 294/622 (47%), Gaps = 43/622 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MDSSNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRVLKKEVSG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     + T ++    +    +    I+   F++ +      N     +K  LE L
Sbjct: 296 NGITSTPKSKVATGKSAPSPLPLFPEEGGGIQGDLFANFTP-----NEPNEAKKSNLETL 350

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +  S       +Y  I   K  ++ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 351 ESQS------RNYQLIDTEKKRREIIQKLLTSKILSLDTETTETEPMDAELVGMSFSIAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +          ++ +     +          +I+   +  FENE+ LK+G NIKYD +V
Sbjct: 405 NE--------AFYVPVPSDRDE--------ALKIVKEFRPVFENENSLKVGQNIKYDMIV 448

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK-SRKSSIPI 530
           L  YG  ++G   D M+  YVL      H +  +A+ +L Y      E++    K+   +
Sbjct: 449 LQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNM 507

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
             +    V  +A E++++ L+L  +L  +L       ++  ++ P++ V+  +E  G+ +
Sbjct: 508 RDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLL 567

Query: 591 DQDLLKQVSAEISKNLLSLEEN 612
           D + L+Q SA  +  +  +E+ 
Sbjct: 568 DTEALQQSSAHFTAQMEQIEKE 589


>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/529 (41%), Positives = 324/529 (61%), Gaps = 32/529 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIA 506
             +K     +   K+ +++K    +LH+        ++  +D+ML SYVLDS RSS+D+ 
Sbjct: 346 EAIKHLLTLQSIQKVVYDLK---NILHKVDFDETNQIKNCDDVMLASYVLDSTRSSYDLE 402

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL-WLLLRPKLIVEKL 565
           ++   +L+                     + ++E+    + V+L+  W  L   + +   
Sbjct: 403 TLFISYLNT------------------DIAAIKENRWAGATVLLRNLWDELSKLIDLNSA 444

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
            +VYE ++ P++ ++ +ME  G ++D++ L++ + EI   LL LE  IY ++GE FN++S
Sbjct: 445 QYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWFNINS 504

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQL  ILF KLK P   KTKTG + T A+ LE++    + II  IL++R  +KI +TY 
Sbjct: 505 PKQLSYILFEKLKLPVVKKTKTG-YSTDAEVLEEL-YDKHDIIPLILDYRMYTKILTTYC 562

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
             L   IN  T R+HT +    T TGRLAS EPNLQNIP+K D G+ IR+AF+      L
Sbjct: 563 QGLVQAINPVTGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYML 622

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           I ADYSQIELRILAHI++   L   F+N+LDIH   AAEIFGV+I +V+P MR  AK +N
Sbjct: 623 IDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVN 682

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  ++I R EAA++I RYF ++P + EY++    F R+NG+V TIF R
Sbjct: 683 FGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTIFNR 742

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           + +  +I S   ++RN  ER A+N+PIQGSAADI + AMI V+K L+++ L ++++LQ+H
Sbjct: 743 KRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVH 802

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+ E P EE     +I+   ME A L    L+VPL V +K  +NW E
Sbjct: 803 DELLIESPYEEKEIVKEIVKSEMENAVL----LKVPLVVEVKEGSNWYE 847



 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 191/382 (50%), Gaps = 16/382 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              + DG+S +YRAF+A P L+    G+P NAI GF N+L K L + + +    + AV F
Sbjct: 2   KFVIFDGNSILYRAFFALPQLTT-STGIPTNAIYGFLNVLLKYLDSEKPD----YVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    A  IP +E +G+EADD+I T  
Sbjct: 57  DKKGRAVRKSEYEEYKANRKPMPDSLQVQIPYVREILAAMNIPVLECEGYEADDVIGTLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
              +     + II+ D+D +QL+            +D   E+   +E+V +K+G+   ++
Sbjct: 117 NRFKARDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTEDLYTVENVKEKYGVFAHQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V  +AL GD+ DNIPG+ GIG KTA  LL+EY  LENI  N + IK    +E +    + 
Sbjct: 177 VDYKALVGDASDNIPGVKGIGDKTAIKLLEEYQTLENIYQNLNNIKGA-LKEKLESGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +  D+PI + LE L  ++ +  RL   L  LEF   I R+  + + + A  
Sbjct: 236 AFLSKRLATIICDLPIEVNLEELKTKEWDKERLYQILLQLEFKSFIKRLGFSEEINYARQ 295

Query: 300 EPVVLDINTTENKGIA--IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              + + +  E + ++     EI    + +   F     QTS I +  TP K  ++ L  
Sbjct: 296 NFQLPEFSIKELRDVSEIEGKEIYLLYSDEEGLFCIYDHQTSTIFT--TPDKEAIKHLLT 353

Query: 358 LSQYPINNDSYTKIVNTKDIQQ 379
           L            I++  D  +
Sbjct: 354 LQSIQKVVYDLKNILHKVDFDE 375


>gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 650

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 208/530 (39%), Positives = 317/530 (59%), Gaps = 17/530 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           +K   E+E   K   ++K   +  HR GI   G + D++L SY++++  +S+D+  IA  
Sbjct: 130 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 189

Query: 512 WLSYTRK---EILKSRKS-SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  Y+ K   E+    KS  IP D   D ++  H     N I  L   L  KL   +   
Sbjct: 190 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDA 246

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +++ ++ P   V+++ME+ G++++   L Q+  E +  L  LE+ IY  +GEKFNL+SPK
Sbjct: 247 LFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAGEKFNLNSPK 306

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG ILF KL  P   KTKTG   +TA ++       +PI+  IL++RQ++KI+STY   
Sbjct: 307 QLGHILFEKLGLPVIKKTKTGY--STAVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKG 364

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLI 746
           L + I     RVHT Y    T TGRL+S++PNLQNIP +T+ G++IR+AF+   P   + 
Sbjct: 365 LLDVIQPDG-RVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 423

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTIN 805
           S DYSQ+ELR+LAH++    + + F+   DIH   A +IF +   ++V+P MRRHAK +N
Sbjct: 424 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 483

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS + L+  L I R  A ++I  YF ++P I +Y+ K     R  GY ETI  R
Sbjct: 484 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIEDYMNKAVQEARDKGYAETIMHR 543

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  +I++ K ++R   ER AIN+PIQGSAADI + AMI++ K L++  L TKM++Q+H
Sbjct: 544 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVH 603

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           DEL+F+VP++E+ T  +I+   M+ A    + L VPL  +    +NW + 
Sbjct: 604 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNWYDA 649



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 83/210 (39%), Gaps = 9/210 (4%)

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDC 294
             + A L++KL  +  D P+T+ ++ +  +  +  +L  F + + F K +  + A+    
Sbjct: 1   DKDKAFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQ 60

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D+  +E V   +   +N      TE D          ++         S +   K+++ R
Sbjct: 61  DSTEVEKVEYIVLNDDNVKDVKATEADTIEFYLEMLGANYHLAPFVGFSLKINDKIYVSR 120

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS--FKIITDTMDAFHSKPIAIAIS 412
                   +  D+   I+  + I++ V  L+    A+    I T  +D      +A  + 
Sbjct: 121 D----VELLEEDNIKHILEDEKIKKNVFDLKRTMVAAHRLGIHTHGLDY--DMLLASYLI 174

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
             +   +   ++  ++ D SV T  +  GK
Sbjct: 175 NNENNSNDLGEIAHLYGDYSVKTDLEVYGK 204


>gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
 gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
          Length = 888

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 203/519 (39%), Positives = 320/519 (61%), Gaps = 10/519 (1%)

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--- 515
           N     IG++IK +     +  +  + +ED+M++ Y++DS + ++DI  ++ ++L+    
Sbjct: 375 NLDIKIIGYDIKEELFFALKNNLEFKNYEDVMILEYLIDSNKGNYDILKVSNEFLNLEIL 434

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
             KE+L   K+     ++ +  + +   +N   I  L+ +   K     L+ +YE ++KP
Sbjct: 435 DLKEMLGKGKNKKTFFELEEDIIFKFISQNVFAISALYDIFIEKAKENNLISLYENVEKP 494

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           ++ V++ ME TG+ +D++ + +++ E SK     E+ +Y+L+GE FNL+SPKQLG ILF 
Sbjct: 495 LVKVLADMEKTGVLVDRNKIIELNEEYSKLAYLYEQKVYELAGEVFNLNSPKQLGVILFE 554

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           K+  P   KTKTG + T  + LE+++   + I+  IL++R L+K+ STY D +  +I   
Sbjct: 555 KIGLPVVKKTKTG-YSTDVEVLEKLS-KKHEIVDYILKYRSLNKLISTYLDGILEYIMDD 612

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
             RV T +    T TGRL+S++PNLQNIPI+++ G+ IR+ F++   K  I ADYSQIEL
Sbjct: 613 G-RVRTSFKQMITATGRLSSVDPNLQNIPIRSEEGKNIRKVFVADKNKVFIDADYSQIEL 671

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LAH++K + +   F+N LDIH   A+E+FGV I +V+   RR AK +NF I+YGIS +
Sbjct: 672 RVLAHLSKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKAVNFGIVYGISDY 731

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+  L I R+EA  YI  Y + +P I  Y+E+  N  +++G+V TI  R+ +  EINS 
Sbjct: 732 GLSKDLNITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKKDGFVTTILDRKRYIPEINSK 791

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             +IR+  ER A+N PIQGSAADI + AMI V++ L+  K+  K++LQIHDEL+ E  E 
Sbjct: 792 NFNIRSFGERIALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQIHDELIVECEES 851

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E  T  +I+ +SME        L +PLKV+I    NW E
Sbjct: 852 EKETVKKILKNSMENV----YKLDLPLKVDICEGRNWYE 886



 Score =  303 bits (776), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 169/300 (56%), Gaps = 10/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K   + L+DGSS I+RAFYA   L+ K DG+ VN + GF NM +K L+        +H 
Sbjct: 11  NKMKKILLIDGSSLIFRAFYAIRNLTTK-DGVFVNGVYGFLNMYYKALELIN----PTHI 65

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD  + TFR+  + DYK  R   P  +  Q  +++    +  +  +E+  +EADDII
Sbjct: 66  FVAFDKGSKTFRHNEFADYKGTRDNAPNEITYQFGILKDLLSSMNVNYLELDEYEADDII 125

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +A+KEGF V I + D+D +QLV     +Y T K     + ++ E +++++ + P+
Sbjct: 126 GTIAKLAQKEGFEVDIFTGDRDYLQLVDDNILVYLTKKGISEIKLMNTESILEEYDLSPK 185

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++AL GDS DNIPG+ G+G KTA  L+QEYGNLEN+  N   +K  K +EN++   
Sbjct: 186 QLIDVKALQGDSSDNIPGVKGVGEKTALKLIQEYGNLENLYENIDNLKG-KLKENLVNEK 244

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LSR L  +   VPI   +E   ++D N    +  L+ LEF  +IN+       ++ 
Sbjct: 245 DKAYLSRYLGEIFLRVPIERNIEDFEIKDVNYNEYLKKLEKLEFNSIINKHFKDIKKEST 304


>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
 gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
 gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
          Length = 856

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 220/528 (41%), Positives = 321/528 (60%), Gaps = 32/528 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506
           EI   ++    +E+  KIG  I+ D   L+     ++G   D+ L SY+L+  R +H + 
Sbjct: 358 EIRKKIENIISSENVKKIGSYIQRDLHFLNC---KIKGDVFDVSLASYLLNPERQNHSLD 414

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +  ++L+         + S IP         Q++A      +  L  +L  ++  E L 
Sbjct: 415 ILIGEYLN---------KTSFIP---------QKYAG----YLFPLKSILEERIKNEGLE 452

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            V   ++ P+I V+  ME  GI++D++ LKQ+S E  + +  LEE IY+L+G +FNL+SP
Sbjct: 453 FVLYNIEIPLIPVLYSMEKWGIKVDKEYLKQLSDEFCERIKKLEEEIYELAGTRFNLNSP 512

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQL ++LF +LK PSG K KTG   +T+  + Q     +PI++ IL++R+L K+KSTY D
Sbjct: 513 KQLSEVLFERLKLPSGKKGKTGY--STSSSVLQNLINAHPIVRKILQYRELYKLKSTYVD 570

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
           ++PN +N +T RVHT ++   T TGR++S EPNLQNIPIK++ G+KIRRAF+S     L+
Sbjct: 571 AIPNLVNPQTGRVHTKFNPTGTATGRISSSEPNLQNIPIKSEEGRKIRRAFVSEDGYFLV 630

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           S DYSQIELRI+AH+++   L   F+   DIHR  A+EIFGV  E+V   +R  AK +NF
Sbjct: 631 SLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEEVDDLLRSRAKAVNF 690

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            IIYGIS F L+  + I   EA  +I  YF  +P +  +I+KT +  R+  YV+T+FGR+
Sbjct: 691 GIIYGISSFGLSETVSITPEEAEKFIDSYFKHYPRVKLFIDKTIHEAREKLYVKTLFGRK 750

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            +  EI S    +RN  ER AINAPIQG+AADI + AMI ++K +E+  L +++LLQIHD
Sbjct: 751 RYIPEIKSINKQVRNAYERIAINAPIQGTAADIIKLAMIEIYKEIENKNLKSRILLQIHD 810

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EL+ EVPEEE+     +    MEK     + L VPL V I V  N  E
Sbjct: 811 ELILEVPEEEMEFTPLMAKEKMEKV----VELSVPLVVEISVGKNLAE 854



 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 96/313 (30%), Positives = 157/313 (50%), Gaps = 15/313 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + ++DGSS IYR +YA P L  K +G   NA+ GF  +L K +++   +      
Sbjct: 17  ESKRKILIIDGSSLIYRVYYALPPLKTK-NGELTNALYGFIRILLKAVEDFNPDL----V 71

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD P  TFR+ IY +YKA RP + + L  Q+P +R   +   IP +E  G+EADDII
Sbjct: 72  GVAFDRPEPTFRHVIYKEYKAKRPPMKDDLKAQIPWIREFLRLNDIPLLEEPGYEADDII 131

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT     + +     I+S D DL+QLVS  T L    K        D + V  ++G+ P 
Sbjct: 132 ATIVNKYKDD--LKYILSGDLDLLQLVSDKTFLIHPQKGITEFTIYDPKAVKDRFGVEPY 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K+   + L GD  DNIPG+ GIG K A+ +L++  +++    +  ++     RE I +  
Sbjct: 190 KIPLYKVLVGDESDNIPGVNGIGPKKASKILEKISSVDE-FKSKIKVLDSDLRELIEKNW 248

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
                + +LV L+ ++   + L+   ++     ++I FLK  E   ++ ++      +  
Sbjct: 249 NIIERNLELVTLK-NIDKDLILKPFEIKR--DEKVIDFLKRYELKSILQKLFPDLQEEEN 305

Query: 298 NIEPVVLDINTTE 310
                V +IN  E
Sbjct: 306 IEIKDVEEINFNE 318


>gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 849

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/541 (39%), Positives = 325/541 (60%), Gaps = 30/541 (5%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI----SMRGFEDIMLMS 493
           D       T      ++K  +++   K+ +++K    +LHR        ++   D+ML S
Sbjct: 333 DQLSSAVFTTADKGIVEKLLKDQGIQKVVYDLK---NILHRVDFGDTYQLKNCNDVMLAS 389

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
           YVLDS RSS+D+ ++   +L+     I ++R +   I                 ++  LW
Sbjct: 390 YVLDSTRSSYDLETLFISYLNTDIAIIKENRWAGATI-----------------LLRNLW 432

Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
             L   + +    +VYE ++ P++ ++ +ME  G +++++ L++ + EI   LL LE  I
Sbjct: 433 DELSKLIDLNSCQYVYENIEIPLVPILYEMEKIGFKVNKNTLQEYTKEIESKLLKLETQI 492

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
           Y ++GE FN++SPKQL  +LF KLK P   KTKTG + T A+ LE++    + I+  IL+
Sbjct: 493 YQIAGEWFNINSPKQLSYVLFEKLKLPVVKKTKTG-YSTDAEVLEEL-YDKHEIVPLILD 550

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           +R  +KI +TY   L   IN  T RVH+ +    T TGRLAS E NLQNIP+K D G+ I
Sbjct: 551 YRMYTKILTTYCQGLMQAINSVTGRVHSNFIQTGTATGRLASAESNLQNIPVKYDEGRLI 610

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R+AFI      LI ADYSQIELRILAHI++   L   F+N+LDIH   AAEIFGV++ +V
Sbjct: 611 RKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDVSQV 670

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +P MR  AK +NF IIYGIS + L+  ++I R EAA++I RYF ++P + EY++    F 
Sbjct: 671 TPTMRSQAKAVNFGIIYGISDYGLSKDIKISRKEAAEFINRYFEKYPKVKEYLDNVVKFA 730

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           R+NG+V T+F R+ +  +I S   ++RN  ER A+N+PIQGSAADI + AMI V++ L++
Sbjct: 731 RENGFVLTLFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVYRRLKE 790

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             L ++++LQ+HDEL+ E P EE     +I+   ME A    ++L+VPL V +K   NW 
Sbjct: 791 ENLKSRIILQVHDELLIESPYEEKEIVKEIVKTEMENA----VSLKVPLVVEVKEGLNWY 846

Query: 974 E 974
           E
Sbjct: 847 E 847



 Score =  330 bits (846), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 12/309 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L + DG+S +YRAF+A P L+   + +P NAI GF N+L K L + R +    + AV F
Sbjct: 2   KLVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFLNVLLKYLDSERPD----YVAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R   Y +YKANR  +P+ L  Q+P VR    A  IP +E +G+EADD+I T  
Sbjct: 57  DKRGRAARKSEYEEYKANRKPMPDSLQIQIPYVREIISALNIPILEYEGYEADDVIGTLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
              + +   + II+ D+D +QL+            +D   E+   +E+V +K+G+   ++
Sbjct: 117 NRLKNQNLEIVIITGDRDTLQLLDKNVIVKIVTTRFDKTTEDLYTVENVKEKYGVFAHQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V  +AL GD+ DNIPG+ GIG KTA  LL+EY  LENI  N   IK    RE +    + 
Sbjct: 177 VDYKALVGDASDNIPGVKGIGGKTAIKLLEEYQTLENIYQNLKNIKDS-LREKLEAGKDM 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS+KL  +  D+PI + LE L   + +  +L   L  LEF   I R+  + + +    
Sbjct: 236 AFLSKKLATIICDLPIEVTLEELKRREWDKKKLYQILLQLEFKSFIKRLGFSEEIEEIKQ 295

Query: 300 EPVVLDINT 308
              +   N 
Sbjct: 296 AVQLPKFNM 304


>gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
           In Complex With Fragment Dna Polymerase I From Bacillus
           Stearothermophilus
          Length = 580

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 199/605 (32%), Positives = 331/605 (54%), Gaps = 49/605 (8%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F +     +   +   A+ +  +++        +   + ++V            T    
Sbjct: 4   AFTLADRVTEEMLADKAALVVEVVEEN-----YHDAPIVGIAVVNEHGRFFLRPETALAD 58

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----------------RGFEDIMLMS 493
                +  +E   K   + K   + L   GI +                 +G +D+   +
Sbjct: 59  PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAA 118

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +              +++ +    E    K  K ++P + +    + EH +  +  I  
Sbjct: 119 KM--------------KQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAAIWA 160

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L      +L   +   +   L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+
Sbjct: 161 LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQ 220

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            IY+L+G++FN++SPKQLG ILF KL+ P   K+KTG   +T+ D+ +     + I++NI
Sbjct: 221 RIYELAGQEFNINSPKQLGVILFEKLQLPVLKKSKTGY--STSADVLEKLAPYHEIVENI 278

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L +RQL K++STY + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+
Sbjct: 279 LHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGR 338

Query: 732 KIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           KIR+AF+       + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ 
Sbjct: 339 KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSE 398

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++V+P MRR AK +NF I+YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E   
Sbjct: 399 DEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIV 458

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  
Sbjct: 459 QEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNAR 518

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L++ +L  ++LLQ+HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+    +
Sbjct: 519 LKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGS 574

Query: 971 NWQEE 975
            W + 
Sbjct: 575 TWYDA 579


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 867

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/728 (30%), Positives = 369/728 (50%), Gaps = 31/728 (4%)

Query: 263 ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDR 322
            +E+ +   ++     +   + I+        D ++  P V +I       +  E     
Sbjct: 155 QMEEYDERAVVERY-EVTPRQFID--LKGLMGDKSDNIPGVPNIGEKTAIKLIKEFGSIE 211

Query: 323 DTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQ 382
           +  + T +      +  + N+E       L  +++     I+   Y   +   D ++ + 
Sbjct: 212 NVLMNTDKLKGKIRENIENNTEMAMLSKKLATIERNVPIEIDLSEYQ--LRDYDREKLID 269

Query: 383 KLETIGSASF--KIITDTMDAFHSK--PIAIAIST------LDQKDDTSFKVETIFIDLS 432
             E +   S    +  D  D    K  P+             D        +E     +S
Sbjct: 270 LFEKLEFTSLINDLKKDADDIREVKEWPVRDFKYIRELLKREDTLSFYPLILEGEVKAVS 329

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIML 491
             T  +S        E+     K  +NE    IGH+IK   + L  +GI +   F D  +
Sbjct: 330 FATDDESFFVEVDDYEVF----KLLDNEKLTLIGHDIKDFFVNLSYHGIELNCKFYDTAI 385

Query: 492 MSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
           M+Y+L+   S++DI  + +K+L       +++L   KS    D I    + ++    ++ 
Sbjct: 386 MTYLLNPSESNYDIGRVLKKYLKEDIPNIEDMLGKGKSKKSYDDIDKKLLIDYLCATASK 445

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           + +L   L   +   ++  + + ++ P+++V+  ME+ G  +D+D+LK +S EI +    
Sbjct: 446 LSKLKDKLMSFIKEMEMEELLDNVELPLVEVLKSMEVYGFTLDKDVLKDLSKEIGEKTDK 505

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           + ++IYD +G +FN++S KQL + LF KL  P   KTKTG   +T  ++       N I+
Sbjct: 506 IIKDIYDAAGYEFNINSTKQLSEFLFDKLNLPPIKKTKTGY--STDMEVLVELIPYNEIV 563

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
             I+E+RQL K+KSTY D     ++K  +   TF       TGR++S EPNLQNIP++ +
Sbjct: 564 GEIIEYRQLMKLKSTYIDGFMPIMDKDDKVHSTFK-QTVAATGRISSTEPNLQNIPVRDE 622

Query: 729 LGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            G++IR+AFIS      ++SADYSQIELR+LAH+++   L + F N+ DIH   A+E+F 
Sbjct: 623 FGRRIRKAFISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFK 682

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           +  E+V+ +MRR AK +NF I+YGIS + L+  L+I R EA +YI  YF R+ G+  YI+
Sbjct: 683 IAPEEVTGEMRRRAKAVNFGIVYGISDYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYID 742

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
               F R+NGYV TI  RR +  EINS   + R+  ER A+N PIQGSAADI + +M+ V
Sbjct: 743 SVVKFARENGYVTTILNRRRYIPEINSKNYNQRSFGERMAMNTPIQGSAADIIKMSMVKV 802

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           +  L+   L +K++LQIHDEL+ +   +E+     ++   ME      I LRVPL V+I 
Sbjct: 803 YNELKSRSLKSKLILQIHDELIVDTFPDEVEIVKNLLKTIMENV----IKLRVPLVVDIG 858

Query: 968 VSNNWQEE 975
              NW + 
Sbjct: 859 YGKNWYDA 866



 Score =  348 bits (892), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 122/307 (39%), Positives = 174/307 (56%), Gaps = 10/307 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DG+S +YRA++A P L    +GL  NAI GF  ML KLL   + +    + AV F
Sbjct: 3   KFLIIDGNSLMYRAYFALPDLMN-SEGLHTNAIYGFSMMLLKLLDEEKPD----YIAVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y  YK  R  +PE L+ Q+ +++    AF I  IEI+GFEADDII T +
Sbjct: 58  DKKAPTFRHKEYSAYKGTRQSMPEELIEQVDILKDVINAFNIKTIEIEGFEADDIIGTVS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            IA + G  V I++ D+D +QLVS    +    K     E+ D   V++++ + P + + 
Sbjct: 118 KIASENGLKVLIVTGDRDALQLVSDGVKVKICKKGITQMEEYDERAVVERYEVTPRQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+P IG KTA  L++E+G++EN+L+N  ++K  K RENI    E A 
Sbjct: 178 LKGLMGDKSDNIPGVPNIGEKTAIKLIKEFGSIENVLMNTDKLKG-KIRENIENNTEMAM 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS+KL  +  +VPI I L    L D +  +LI   + LEFT LIN +    D      E 
Sbjct: 237 LSKKLATIERNVPIEIDLSEYQLRDYDREKLIDLFEKLEFTSLINDLKKDADDIREVKEW 296

Query: 302 VVLDINT 308
            V D   
Sbjct: 297 PVRDFKY 303


>gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
 gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
 gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 867

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 219/712 (30%), Positives = 369/712 (51%), Gaps = 18/712 (2%)

Query: 274 SFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
           +  +  E T L          D ++  P V +I       +  E     +  + T +   
Sbjct: 163 AVFEKYEVTPLQFIDLKGLMGDKSDNIPGVPNIGEKTAIKLVKEFGSIENLLMNTDKLKG 222

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY-TKIVNTKDIQQWVQKLETIGSASF 392
              +  + N+E       L  +++     I+ + Y  K  +   + +  +KLE     S 
Sbjct: 223 KIKENVENNAELAVLSKRLATIERNVPIDIDLNEYAVKNYDVNKLTELFEKLEFSSLIS- 281

Query: 393 KIITDTMDA--FHSKPIAIAISTLDQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +  D+ D       P+       +         +     D  +     + G  +   EI
Sbjct: 282 DLKDDSRDTKDIKEWPVRDFTYVKNVLGKFDVLSLYPFIYDGKIKAVSFACGDGSFFVEI 341

Query: 450 LSYLK-KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIAS 507
             Y   K   N+    IGH++K   + +   GI +     D  +M+Y+L+   S++DI+ 
Sbjct: 342 DDYDNFKLLNNDKLTLIGHDLKDFLVNISYCGIELNCKILDTAIMTYLLNPSESNYDISR 401

Query: 508 IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           + +K+L        +I+   ++    D I    + ++    ++ + +L   L   +   +
Sbjct: 402 VLKKYLKEDLQNIDDIVGKGRNKKSYDDIDKKLLVDYMCSAASNLSKLKDKLMSFIKEME 461

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +  + + ++ P+I+V+  ME+ G  +D+D+L+ +S EI +    + ++IYD +G +FN++
Sbjct: 462 MEDLLKNVEIPLIEVLKSMEVYGFTLDKDVLRSISKEIDEKTDKIVKDIYDAAGYEFNIN 521

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQL + LF KL  P+  KTKTG + T  + L ++    N I+  I+E+RQL K+KSTY
Sbjct: 522 STKQLSEFLFDKLNLPAIKKTKTG-YSTDMEVLAEL-IPYNDIVGEIIEYRQLMKLKSTY 579

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTK 743
            D     I     RVH+ +      TGR++S EPNLQNIP++ + G++IR+AF+S     
Sbjct: 580 IDGFIP-IMDENNRVHSTFKQTVAATGRISSTEPNLQNIPVREEFGRRIRKAFVSSYEDG 638

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            +ISADYSQIELR+LAH+++   L + F N+ DIH   A+E+F V+ E+V+ +MRR AK 
Sbjct: 639 LIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFKVSKEEVTSEMRRRAKA 698

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS + L+  L+I R EA +YI  YF R+ G+  YI+    F ++NGYV TI 
Sbjct: 699 VNFGIVYGISDYGLSKDLKISRKEAKEYIDNYFDRYKGVKNYIDSIVKFAKENGYVTTIL 758

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR +  EINS   + R+  ER A+N PIQGSAADI + +M+ V+  L++  L ++++LQ
Sbjct: 759 NRRRYIPEINSKNFNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKERGLKSRLILQ 818

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +HDEL+ +   +E+    +++   ME      I L+VPL V+I    NW + 
Sbjct: 819 VHDELIIDTHPDEVEIVKELLKSIMEN----IIKLKVPLVVDIGQGKNWYDA 866



 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 177/310 (57%), Gaps = 10/310 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DG+S +YRA++A P L    +G+  NAI GF  ML KLL+  + +    + A+ F
Sbjct: 3   KFLIIDGNSLMYRAYFALPDLMN-SEGMHTNAIYGFSMMLLKLLEEEKPD----YIAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y  YK  R  +PE L+ Q+ +++    AF I  IEI+GFEADDII T +
Sbjct: 58  DKKASTFRHKEYSAYKGTRQSMPEELIEQVDILKDVINAFNIKTIEIEGFEADDIIGTVS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            IA + G  V I++ D+D +QLVS    +    K     ++ D + V +K+ + P + + 
Sbjct: 118 KIASESGMDVLIVTGDRDALQLVSANVKVKICKKGITQMDEYDEKAVFEKYEVTPLQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPG+P IG KTA  L++E+G++EN+L+N  ++K  K +EN+   AE A 
Sbjct: 178 LKGLMGDKSDNIPGVPNIGEKTAIKLVKEFGSIENLLMNTDKLKG-KIKENVENNAELAV 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS++L  +  +VPI I L    +++ +  +L    + LEF+ LI+ +           E 
Sbjct: 237 LSKRLATIERNVPIDIDLNEYAVKNYDVNKLTELFEKLEFSSLISDLKDDSRDTKDIKEW 296

Query: 302 VVLDINTTEN 311
            V D    +N
Sbjct: 297 PVRDFTYVKN 306


>gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
 gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
          Length = 580

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 201/605 (33%), Positives = 331/605 (54%), Gaps = 49/605 (8%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F +     +   +   A+ +  +++    +  V      ++V            T    
Sbjct: 4   AFTLADRVTEEMLADKAALVVEVVEENYHAAPIV-----GIAVVNEHGRFFLRPETALAD 58

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----------------RGFEDIMLMS 493
                +  +E   K   + K   + L   GI +                 +G +D+   +
Sbjct: 59  PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAA 118

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +              +++ +    E    K  K ++P + +    + EH +  +  I +
Sbjct: 119 KM--------------KQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAAIWE 160

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L      +L   +   +   L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+
Sbjct: 161 LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQ 220

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I++NI
Sbjct: 221 RIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIVENI 278

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L +RQL K++STY + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+
Sbjct: 279 LHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGR 338

Query: 732 KIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           KIR+AF+       + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ 
Sbjct: 339 KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSE 398

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++V+P MRR AK +NF I+YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E   
Sbjct: 399 DEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIV 458

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  
Sbjct: 459 QEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNAR 518

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L++ +L   +LLQ+HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+    +
Sbjct: 519 LKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGS 574

Query: 971 NWQEE 975
            W + 
Sbjct: 575 TWYDA 579


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
          Length = 880

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/577 (38%), Positives = 340/577 (58%), Gaps = 27/577 (4%)

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
           A   K IA ++         + K+  I   L     +      T   +I   LK+  E+E
Sbjct: 320 ALEYKEIAFSLKIAKDSCARNGKITEI---LYAFQDESVYSYKTENNKIADALKEILESE 376

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              K+  N K   L L   GI ++    + +L  Y+L    S  D+  I  + L    +E
Sbjct: 377 TIEKLFINAKESSLALLCAGIEVKNISFEPLLAYYLLQPSSSLPDLEEIFSRELDIGMQE 436

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
             +        D+I            +  + +L  +L  KL  + L  +++ ++ P+I V
Sbjct: 437 FSQ--------DQI--------LAVETIKLFKLRDILIKKLKDDSLYDLFKNMELPLIKV 480

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++QME  G++ID+D L+Q+S ++ K L  + +  ++L+GE FNL+SPKQLG+ILF KL  
Sbjct: 481 LAQMEYNGVKIDKDWLQQLSDKLEKRLEIITKKAHELAGEDFNLNSPKQLGEILFEKLGL 540

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   +TKTG + T A  LE++  G +PII  I E+R+L+K+KSTY DSLP  IN  T ++
Sbjct: 541 PVIKRTKTG-YSTNANVLEKLE-GKHPIIPLISEYRELAKLKSTYIDSLPPLINSETGKI 598

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRIL 758
           HT ++   T TGRL+S  PNLQNIPI+T+ G++IR+AFI       L++ DYSQIELR+ 
Sbjct: 599 HTSFNQMVTATGRLSSTNPNLQNIPIRTEEGREIRKAFIPSSDNMILLAVDYSQIELRVF 658

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L + F +  DIH   A+EIF V  E+VSP +RRHAK INF + YG+S + L+
Sbjct: 659 AHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVINFGLAYGMSAYGLS 718

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             L IP  EA DYI +YF RF G+ +Y+++T   V++ GY ET++GR+ +  EINS    
Sbjct: 719 QDLDIPVEEAQDYIDKYFERFSGVKKYMDETIQKVKEKGYAETLYGRKRYIPEINSSNYH 778

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R+  ER+AIN P+QG+AADI +++M+ V+ SL+D  L   +LLQ+HDELVFEV  +++ 
Sbjct: 779 RRSFAERSAINTPVQGTAADIMKKSMLDVYDSLKDIDLEINILLQVHDELVFEVANKDLE 838

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            A+ +I   ME A      L VPL V+++++ NW+++
Sbjct: 839 KAALLIKDKMEAAA----ELDVPLLVDLQIAENWRDK 871



 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/345 (35%), Positives = 192/345 (55%), Gaps = 17/345 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  LFL+DG S  +RAFYA PLL+   DG   NA+ GF  ML+ L      +      
Sbjct: 7   KDKKTLFLLDGHSITHRAFYALPLLTND-DGQYTNAVFGFIRMLFSLTDEWNPDR----M 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD  A TFR+E Y +YKANR K+PE L+PQ+ L++       IP I  +G+EADD++
Sbjct: 62  IVTFDKKAPTFRHEEYEEYKANRKKMPEELVPQISLLQQTLAKLEIPIIAEEGYEADDLL 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T +  A  + + V II+ D+D +QLVS    +  T K        D+E +  K+ IPPE
Sbjct: 122 GTLSKQAAAQNYDVYIITGDRDALQLVSENIKVMYTRKGLSDLVIYDLEKIFDKYEIPPE 181

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           K++ ++ L GDS DNIPG+PGIG KTA  LL+++ +++ IL N  ++  KKR+EN+ ++ 
Sbjct: 182 KLIDMKGLMGDSSDNIPGVPGIGEKTAIKLLKQFDSIDEILNNIDQVSGKKRKENLKKFT 241

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A++S +L  ++ DVP+ +  +   L+  +  +++   K L F+ L++R     +    
Sbjct: 242 DQAKMSYRLAKIKRDVPLKLDFDKCRLDLYDDGQVVEHFKKLGFSSLLDRFEYKKEIQPE 301

Query: 298 NI--------EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334
           NI        E   L     E K IA   +I +D+  +  + + +
Sbjct: 302 NINFLNVGETELEELKQKALEYKEIAFSLKIAKDSCARNGKITEI 346


>gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair
           Position
 gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position
 gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair
           Position
 gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site
           (- 1 Basepair Position)
 gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position
 gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion
           Site
 gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion
           Site (-1 Basepair Position)
          Length = 580

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 200/608 (32%), Positives = 331/608 (54%), Gaps = 49/608 (8%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +F +     +   +   A+ +  +++        +   + ++V            T 
Sbjct: 1   KKMAFTLADRVTEEMLADKAALVVEVVEEN-----YHDAPIVGIAVVNEHGRFFLRPETA 55

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----------------RGFEDIM 490
                   +  +E   K   + K   + L   GI +                 +G +D+ 
Sbjct: 56  LADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVA 115

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + +              +++ +    E    K  K ++P + +    + EH +  +  
Sbjct: 116 AAAKM--------------KQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAA 157

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           I +L      +L   +   +   L++P+  ++++ME  G+++D   L+Q+  E+++ L +
Sbjct: 158 IWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGT 217

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           +E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I+
Sbjct: 218 VEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIV 275

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           +NIL +RQL K++STY + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ +
Sbjct: 276 ENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLE 335

Query: 729 LGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            G+KIR+AF+       + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF 
Sbjct: 336 EGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQ 395

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V+ ++V+P MRR AK +NF I+YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E
Sbjct: 396 VSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYME 455

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                 +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI +
Sbjct: 456 NIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL 515

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           +  L++ +L   +LLQ+HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+  
Sbjct: 516 NARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYH 571

Query: 968 VSNNWQEE 975
             + W + 
Sbjct: 572 YGSTWYDA 579


>gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna.
 gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 10 Base Pairs Of Duplex Dna
           Following Addition Of A Single Dttp Residue
 gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 11 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp And A Datp Residue.
 gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 15 Base Pairs Of Duplex Dna
           Following Addition Of Dttp, Datp, Dctp, And Dgtp
           Residues.
 gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 12 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp, A Datp, And A Dctp
           Residue.
 gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site
 gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site
 gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site
 gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site
 gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site
 gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site
 gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site
 gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site
 gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site
 gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Two Rounds Of Primer
           Extension, Following Incorporation Of Dctp And Dgtp.
 gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Three Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, And
           Dttp.
 gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Five Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, Dttp,
           And Datp.
 gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Cytosine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A
           Benzo[a]pyrene Adduct That Blocks Replication
 gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As
           Yet Unnamed) Dna Polymerase Fragment
          Length = 580

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 200/605 (33%), Positives = 331/605 (54%), Gaps = 49/605 (8%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F +     +   +   A+ +  +++        +   + ++V            T    
Sbjct: 4   AFTLADRVTEEMLADKAALVVEVVEEN-----YHDAPIVGIAVVNEHGRFFLRPETALAD 58

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----------------RGFEDIMLMS 493
                +  +E   K   + K   + L   GI +                 +G +D+   +
Sbjct: 59  PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAA 118

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +              +++ +    E    K  K ++P + +    + EH +  +  I +
Sbjct: 119 KM--------------KQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAAIWE 160

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L      +L   +   +   L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+
Sbjct: 161 LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQ 220

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I++NI
Sbjct: 221 RIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIVENI 278

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L +RQL K++STY + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+
Sbjct: 279 LHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGR 338

Query: 732 KIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           KIR+AF+       + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ 
Sbjct: 339 KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSE 398

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++V+P MRR AK +NF I+YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E   
Sbjct: 399 DEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIV 458

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  
Sbjct: 459 QEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNAR 518

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L++ +L   +LLQ+HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+    +
Sbjct: 519 LKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGS 574

Query: 971 NWQEE 975
            W + 
Sbjct: 575 TWYDA 579


>gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase
           Active Site
 gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active
           Site
 gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair
 gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site
 gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch
 gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A
           Dna Polymerase
 gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine
           At The Polymerase Active Site
          Length = 580

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 200/605 (33%), Positives = 331/605 (54%), Gaps = 49/605 (8%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F +     +   +   A+ +  +++        +   + ++V            T    
Sbjct: 4   AFTLADRVTEEMLADKAALVVEVVEEN-----YHDAPIVGIAVVNEHGRFFLRPETALAD 58

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----------------RGFEDIMLMS 493
                +  +E   K   + K   + L   GI +                 +G +D+   +
Sbjct: 59  PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAA 118

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +              +++ +    E    K  K ++P + +    + EH +  +  I +
Sbjct: 119 KM--------------KQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAAIWE 160

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L      +L   +   +   L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+
Sbjct: 161 LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQ 220

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I++NI
Sbjct: 221 RIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIVENI 278

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L +RQL K++STY + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+
Sbjct: 279 LHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGR 338

Query: 732 KIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           KIR+AF+       + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ 
Sbjct: 339 KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSE 398

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++V+P MRR AK +NF I+YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E   
Sbjct: 399 DEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIV 458

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  
Sbjct: 459 QEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNAR 518

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L++ +L   +LLQ+HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+    +
Sbjct: 519 LKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGS 574

Query: 971 NWQEE 975
            W + 
Sbjct: 575 TWYDA 579


>gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
 gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
          Length = 579

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 200/605 (33%), Positives = 330/605 (54%), Gaps = 49/605 (8%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F +     +   +   A+ +  +++        +   + ++V            T    
Sbjct: 3   AFTLADRVTEEMLADKAALVVEVVEEN-----YHDAPIVGIAVVNEHGRFFLRPETALAD 57

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----------------RGFEDIMLMS 493
                +  +E   K   + K   + L   GI +                 +G +D+   +
Sbjct: 58  PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAA 117

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +              +++ +    E    K  K ++P + +    + EH +  +  I +
Sbjct: 118 KM--------------KQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAAIWE 159

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L      +L   +   +   L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+
Sbjct: 160 LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQ 219

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I++NI
Sbjct: 220 RIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIVENI 277

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L +RQL K++STY + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+
Sbjct: 278 LHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGR 337

Query: 732 KIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           KIR+AF+       + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ 
Sbjct: 338 KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSE 397

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++V+P MRR AK +NF I YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E   
Sbjct: 398 DEVTPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIV 457

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  
Sbjct: 458 QEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNAR 517

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L++ +L   +LLQ+HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+    +
Sbjct: 518 LKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGS 573

Query: 971 NWQEE 975
            W + 
Sbjct: 574 TWYDA 578


>gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna (Open Form)
          Length = 580

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 199/605 (32%), Positives = 331/605 (54%), Gaps = 49/605 (8%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F +     +   +   A+ +  +++        +   + ++V            T    
Sbjct: 4   AFTLADRVTEEMLADKAALVVEVVEEN-----YHDAPIVGIAVVNEHGRFFLRPETALAD 58

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----------------RGFEDIMLMS 493
                +  +E   K   + K   + L   GI +                 +G +D+   +
Sbjct: 59  PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAA 118

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +              +++ +    E    K  K ++P + +    + EH +  +  I +
Sbjct: 119 KM--------------KQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAAIWE 160

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L      +L   +   +   L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+
Sbjct: 161 LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQ 220

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I++NI
Sbjct: 221 RIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIVENI 278

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L +RQL K++STY + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+
Sbjct: 279 LHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGR 338

Query: 732 KIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           KIR+AF+       + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ 
Sbjct: 339 KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSE 398

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++V+P MRR AK +N+ I+YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E   
Sbjct: 399 DEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIV 458

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  
Sbjct: 459 QEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNAR 518

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L++ +L   +LLQ+HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+    +
Sbjct: 519 LKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGS 574

Query: 971 NWQEE 975
            W + 
Sbjct: 575 TWYDA 579


>gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX
 gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 11 Base Pairs Of Duplex Dna After Addition
           Of Two Datp Residues
 gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna
          Length = 580

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 200/605 (33%), Positives = 331/605 (54%), Gaps = 49/605 (8%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F +     +   +   A+ +  +++        +   + ++V            T    
Sbjct: 4   AFTLADRVTEEMLADKAALVVEVVEEN-----YHDAPIVGIAVVNEHGRFFLRPETALAD 58

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----------------RGFEDIMLMS 493
                +  +E   K   + K   + L   GI +                 +G +D+   +
Sbjct: 59  PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVRAAA 118

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +              +++ +    E    K  K ++P + +    + EH +  +  I +
Sbjct: 119 KM--------------KQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAAIWE 160

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L      +L   +   +   L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+
Sbjct: 161 LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQ 220

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I++NI
Sbjct: 221 RIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIVENI 278

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L +RQL K++STY + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+
Sbjct: 279 LHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGR 338

Query: 732 KIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           KIR+AF+       + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ 
Sbjct: 339 KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSE 398

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++V+P MRR AK +NF I+YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E   
Sbjct: 399 DEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIV 458

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  
Sbjct: 459 QEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNAR 518

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L++ +L   +LLQ+HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+    +
Sbjct: 519 LKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGS 574

Query: 971 NWQEE 975
            W + 
Sbjct: 575 TWYDA 579


>gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form).
 gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form)
          Length = 580

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 199/608 (32%), Positives = 331/608 (54%), Gaps = 49/608 (8%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +F +     +   +   A+ +  +++        +   + ++V            T 
Sbjct: 1   KKMAFTLADRVTEEMLADKAALVVEVVEEN-----YHDAPIVGIAVVNEHGRFFLRPETA 55

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----------------RGFEDIM 490
                   +  +E   K   + K   + L   GI +                 +G +D+ 
Sbjct: 56  LADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVA 115

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + +              +++ +    E    K  K ++P + +    + EH +  +  
Sbjct: 116 AAAKM--------------KQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAA 157

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           I +L      +L   +   +   L++P+  ++++ME  G+++D   L+Q+  E+++ L +
Sbjct: 158 IWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGT 217

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           +E+ IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I+
Sbjct: 218 VEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIV 275

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           +NIL +RQL K++STY + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ +
Sbjct: 276 ENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLE 335

Query: 729 LGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            G+KIR+AF+       + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF 
Sbjct: 336 EGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQ 395

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V+ ++V+P MRR AK +N+ I+YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E
Sbjct: 396 VSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYME 455

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                 +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI +
Sbjct: 456 NIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDL 515

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           +  L++ +L   +LLQ+HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+  
Sbjct: 516 NARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYH 571

Query: 968 VSNNWQEE 975
             + W + 
Sbjct: 572 YGSTWYDA 579


>gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
 gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
          Length = 580

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 199/605 (32%), Positives = 331/605 (54%), Gaps = 49/605 (8%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F +     +   +   A+ +  +++        +   + ++V            T    
Sbjct: 4   AFTLADRVTEEMLADKAALVVEVVEEN-----YHDAPIVGIAVVNEHGRFFLRPETALAD 58

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----------------RGFEDIMLMS 493
                +  +E   K   + K   + L   GI +                 +G +D+   +
Sbjct: 59  PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAA 118

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +              +++ +    E    K  K ++P + +    + EH +  +  I +
Sbjct: 119 KM--------------KQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAAIWE 160

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L      +L   +   +   L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+
Sbjct: 161 LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQ 220

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            IY+L+G++FN++SPKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I++NI
Sbjct: 221 RIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIVENI 278

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L +RQL K++STY + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+
Sbjct: 279 LHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGR 338

Query: 732 KIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           KIR+AF+       + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ 
Sbjct: 339 KIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSE 398

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           ++V+P MRR AK +N+ I+YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E   
Sbjct: 399 DEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIV 458

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              +Q GYV T+  RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  
Sbjct: 459 QEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNAR 518

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L++ +L   +LLQ+HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+    +
Sbjct: 519 LKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGS 574

Query: 971 NWQEE 975
            W + 
Sbjct: 575 TWYDA 579


>gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
 gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 206/591 (34%), Positives = 340/591 (57%), Gaps = 21/591 (3%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F +     +   +   A+ +  +++        +   + ++V            T    
Sbjct: 4   AFTLADRVTEEMLADKAALVVEVVEEN-----YHDAPIVGIAVVNEHGRFFLRPETALAD 58

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
                +  +E   K   + K   + L   GI + G   D++L +Y+LD  +   D+A+ A
Sbjct: 59  PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELXGVSFDLLLAAYLLDPAQGVDDVAAAA 118

Query: 510 Q--KWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           +  ++ +    E    K  K ++P + +    + EH +  +  I +L      +L   + 
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAAIWELERPFLDELRRNEQ 174

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +   L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++S
Sbjct: 175 DRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINS 234

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I++NIL +RQL K++STY 
Sbjct: 235 PKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIVENILHYRQLGKLQSTYI 292

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKK 744
           + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+       
Sbjct: 293 EGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWL 352

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +
Sbjct: 353 IFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAV 412

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           N+ I+YGIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  
Sbjct: 413 NYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH 472

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+
Sbjct: 473 RRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQV 532

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+    + W + 
Sbjct: 533 HDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTWYDA 579


>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
          Length = 831

 Score =  499 bits (1285), Expect = e-138,   Method: Composition-based stats.
 Identities = 209/530 (39%), Positives = 314/530 (59%), Gaps = 32/530 (6%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506
           + L+ +++ F N+    I  + K    V    G++      D  + +YVL+    +  + 
Sbjct: 331 DRLNEIEEIFRNKKI--ITDDAKGIYHVCLEKGLTFPEVCFDARIAAYVLNPADQNPGLK 388

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +  K+                      D  V E    N   +  L   +  K+  ++  
Sbjct: 389 GLYLKY----------------------DLPVYEDVSLNIRGLFYLKKEMMKKIFEQEQE 426

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            ++  ++ P+  V++QME TGIQ+D++ LK++S E+ + +  L   IY L+GE+FNL+SP
Sbjct: 427 RLFYEIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLAGEEFNLNSP 486

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           +QLG ILF KL  P   KTKTG + T A+ LE++    + II  IL +RQL K+KSTY D
Sbjct: 487 RQLGVILFEKLGLPVIKKTKTG-YSTDAEVLEELLPF-HEIIGKILNYRQLMKLKSTYTD 544

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KL 745
            L   IN+RT ++HT ++   T+TGRLAS EPNLQNIPI+ +LG+K+R+ FI  P    +
Sbjct: 545 GLMPLINERTGKLHTTFNQTGTLTGRLASSEPNLQNIPIRLELGRKLRKMFIPSPGYDYI 604

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           +SADYSQIELR+LAH ++   L + ++   DIHR  A+E+FGV++E+V+P+MR HAK++N
Sbjct: 605 VSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLEEVTPEMRAHAKSVN 664

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGIS F L   L+IPR  A  YIK YF  +P + EY+++     R+ GYV T+FGR
Sbjct: 665 FGIVYGISDFGLGRDLKIPREVAGKYIKNYFANYPKVREYLDELVRTAREKGYVTTLFGR 724

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +  E++S   +++   ER A+N P+QGSAADI + AMI+V K L+  KL +++LL +H
Sbjct: 725 RRYIPELSSKNRTVQGFGERTAMNTPLQGSAADIIKLAMINVEKELKARKLKSRLLLSVH 784

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           DELV EVP EE+     ++   ME      + L+VPL   +    NW E 
Sbjct: 785 DELVLEVPAEELEEVKALVKGVMESV----VELKVPLIAEVGAGKNWYEA 830



 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 107/336 (31%), Positives = 184/336 (54%), Gaps = 11/336 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVDG+S ++RAF+A P L     G P  A+ GF  ML++++++ + E    + AV 
Sbjct: 2   GKVVLVDGNSLLHRAFFALPPLKTTK-GEPTGAVYGFLTMLFRVIKDEKPE----YLAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E +  YK +R + P+ L+PQ  LVR   +   +P IE+ G+EADDII   
Sbjct: 57  FDISRKTFRTEQFTAYKGHRKEAPDELVPQFALVREVLKVLNVPYIELDGYEADDIIGHL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           +     +G  V I + D+D++QLV   T +Y T K      K+D+  +++ +G+ P+++V
Sbjct: 117 SRAFAGQGHEVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLV 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++ L GD  DNIPG+PGIG KTA  L++ YG++E +L +   +K  K RE + E+   A
Sbjct: 177 DVKGLMGDPSDNIPGVPGIGEKTALDLIKTYGSVEEVLAHKDELKP-KLREKLAEHENLA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD-AANI 299
           ++S++L  +  ++P+ I LE L +++ N   +      LEF   +  +      +     
Sbjct: 236 KISKQLATILREIPLEISLEDLKVKEPNYEEVAKLFLRLEFKSFLKEIEPKIKKEYQEGK 295

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
           + V ++   TE +   + ++       + ++F SL 
Sbjct: 296 DLVQVETVETEGQIAVVFSDGFYVDDGEKTKFYSLD 331


>gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus Y714s Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 207/591 (35%), Positives = 339/591 (57%), Gaps = 21/591 (3%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +F +     +   +   A+ +  +++    +  V      ++V            T    
Sbjct: 4   AFTLADRVTEEMLADKAALVVEVVEENYHAAPIV-----GIAVVNEHGRFFLRPETALAD 58

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
                +  +E   K   + K   + L   GI + G   D++L +Y+LD  +   D+A+ A
Sbjct: 59  PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELXGVSFDLLLAAYLLDPAQGVDDVAAAA 118

Query: 510 Q--KWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           +  ++ +    E    K  K ++P + +    + EH +  +  I +L      +L   + 
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDEPV----LAEHLVRKAAAIWELERPFLDELRRNEQ 174

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +   L++P+  ++++ME  G+++D   L+Q+  E+++ L ++E+ IY+L+G++FN++S
Sbjct: 175 DRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINS 234

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF KL+ P   KTKTG   +T+ D+ +     + I++NIL +RQL K++STY 
Sbjct: 235 PKQLGVILFEKLQLPVLKKTKTGY--STSADVLEKLAPYHEIVENILHYRQLGKLQSTYI 292

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKK 744
           + L   +   T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+       
Sbjct: 293 EGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWL 352

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           + +ADYSQIELR+LAHIA+   L + F   LDIH   A +IF V+ ++V+P MRR AK +
Sbjct: 353 IFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAV 412

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+ GIS + LA  L I R EAA++I+RYF  FPG+  Y+E      +Q GYV T+  
Sbjct: 413 NFGIVSGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH 472

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR +  +I S   ++R+  ER A+N PIQGSAADI ++AMI ++  L++ +L   +LLQ+
Sbjct: 473 RRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQV 532

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           HDEL+ E P+EE+    +++   ME+A    + LRVPLKV+    + W + 
Sbjct: 533 HDELILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTWYDA 579


>gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 561

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 198/511 (38%), Positives = 314/511 (61%), Gaps = 12/511 (2%)

Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILK 522
           H IK   + L   GI  +  + D  +M+Y+L+   S++D+  + +K+L       +E+  
Sbjct: 54  HEIKDFLVKLSYKGIECKSKYIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFG 113

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
             +    +++I +  + ++       +  L   L   +    +  +   ++ P+++V+  
Sbjct: 114 KGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEEMDMKKLLLEIEMPLVEVLKL 173

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME++G  +D+++LK++S +I   +  + + IY  +G +FN++SPKQL + LF KL  P  
Sbjct: 174 MEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVI 233

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KTKTG + T ++ LEQ+    N ++ +I+E+RQL+K+KSTY D     +++   RVH+ 
Sbjct: 234 KKTKTG-YSTDSEVLEQL-VPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMDE-NNRVHSN 290

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHI 761
           +    T TGR++S EPNLQNIPI+ + G++IRRAFI       ++SADYSQIELR+LAH+
Sbjct: 291 FKQMVTATGRISSTEPNLQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHV 350

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    L + F N+ DIH   AAE+F V +EKV+P+MRR AK +NF IIYGIS + L+  L
Sbjct: 351 SGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDL 410

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
           +I R EA +YI  YF R+ G+ EYIEK   F ++NGYV TI  RR +  EINS   + R+
Sbjct: 411 KISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRS 470

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             ER A+NAPIQGSAADI + AM+ V++  +  +L ++++LQ+HDELV +  ++E+    
Sbjct: 471 QAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVEIVK 530

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +I+  +ME      I L+VPL V I +  NW
Sbjct: 531 KILKENMENV----IKLKVPLVVEIGIGPNW 557


>gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
 gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
          Length = 880

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 204/607 (33%), Positives = 332/607 (54%), Gaps = 47/607 (7%)

Query: 380 WVQKLETIGS---ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
           W++ +E        +F + T + +      +A+A +  DQ   TS KV            
Sbjct: 307 WLETIEEDHVKLDGAFYLETLSENYHFEPVLAVAWTQGDQAYATSGKVAF---------- 356

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYV 495
                         S  +K+ E+    KI  ++K D ++L   G+++ G   D+ L +Y+
Sbjct: 357 ------------ASSAFRKWLEDGDLPKISADLKRDSILLDHQGLTLAGVTFDVGLAAYL 404

Query: 496 LDSGRSSHDIASIAQKWLSY----TRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVI 549
           +D      D+ S+A  +L         E++  K  K ++P     + ++ +H  +  +++
Sbjct: 405 VD-VEKIKDLTSLAT-YLDLGIQVQLDEVVYGKGVKQALP----ENERLAQHLADKVSLL 458

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
            Q    L  +L    +  +Y+ ++ P+  V++ ME  G+ +D   L Q++  +   L  L
Sbjct: 459 DQAVAPLTQQLDDLGMTQLYQDMEFPLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEEL 518

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
           E  I  L+G+ FN +SPKQLG+ILF +L  P   KTKTG   +TA D+ +     +PI+ 
Sbjct: 519 EAEIQTLAGQAFNPNSPKQLGEILFERLGLPVIKKTKTGY--STAADVLEKLKDAHPIVA 576

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            +L +RQL+K++ TY   LP  I    + +HT +    T TGRL+S +PNLQNIPI+ + 
Sbjct: 577 ALLTYRQLAKLQGTYLAGLPKFIQADGK-IHTRFVQTLTQTGRLSSADPNLQNIPIRMEE 635

Query: 730 GQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           G+KIR+AF+   P  +L  ADYSQIELR+LAHI+    + Q F    DIH   A  +FG+
Sbjct: 636 GRKIRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHAATARRVFGL 695

Query: 789 NIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
             ++ V+  MRR AK +NF I+YGIS + L+  L +PR EA  +I RY   +PGI  +++
Sbjct: 696 AEDEAVNSDMRRQAKAVNFGIVYGISDYGLSQNLDMPRKEAKAFIDRYLAEYPGISTFMQ 755

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           +     +++GYV T++GRR    +I S   ++R+  ER A+N PIQG+AADI + AM+++
Sbjct: 756 EIVAQAKKDGYVSTLWGRRRALPDIYSSNFNLRSFAERTAMNTPIQGTAADIIKVAMVAL 815

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            +++    L  ++LLQ+HDEL+ E P+EEI    +++   ME A    ++L VPLKV   
Sbjct: 816 DQAIRQRDLQARLLLQVHDELILEAPQEEIAILEELVPEVMEGA----VSLSVPLKVEAA 871

Query: 968 VSNNWQE 974
             +NW +
Sbjct: 872 SGSNWYQ 878



 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/471 (25%), Positives = 194/471 (41%), Gaps = 28/471 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M +   + L+DGSS  YRAF++   + R     GL  NA+  F  ML  +L   +     
Sbjct: 1   MTQR-KILLIDGSSLAYRAFFSILDIERFKNKAGLHTNALFSFNRMLDGVLDQFK----P 55

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  V FD    TFR E YP+YKA R K P     QLP  R+   A+GI   E+  +EAD
Sbjct: 56  THVLVAFDKSGHTFRTEQYPEYKAGRQKTPGEFREQLPYFRVLLDAYGIKYYELLHYEAD 115

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           DI+ T    A      V I+S DKDL QL S    +Y T K     E      +  K+ +
Sbjct: 116 DILGTLAK-AADPDDQVMILSGDKDLTQLASDQVTVYITKKGVSELEPYTPASIWDKYQL 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++++ L+ L GDS DN PGI  +G KTA  LL ++G +E +     ++K  K +ENI+
Sbjct: 175 TPQQIIDLKGLMGDSSDNYPGIERVGEKTALKLLHQFGTVEGLYQGLDQLKPSKMKENII 234

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
                ARLS+ L  +  D P+ I L+  +L   +  +L  F   ++F   + ++    + 
Sbjct: 235 RDEANARLSKSLARIVQDAPLEITLDDCLLGQRDLAQLSEFYVQMDFRSFLAQLHQGAEV 294

Query: 295 DAA--NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
            A+       V  + T E   + ++     +T  +   F  +         +       +
Sbjct: 295 VASQETTRYPVTWLETIEEDHVKLDGAFYLETLSENYHFEPVLAVAWTQGDQAYATSGKV 354

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
                  +  + +    KI         +   + +  A                + +A  
Sbjct: 355 AFASSAFRKWLEDGDLPKISADLKRDSILLDHQGLTLAGVTFD-----------VGLAAY 403

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENE 460
            +D +          ++DL +    D        K+ L     L +   ++
Sbjct: 404 LVDVEKIKDLTSLATYLDLGIQVQLDEVVYGKGVKQALPENERLAQHLADK 454


>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
 gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
          Length = 880

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 196/531 (36%), Positives = 307/531 (57%), Gaps = 26/531 (4%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505
           ++ L  LK  FEN+   K+ HNIK    V  + GI+      D  + +Y++DS R  + +
Sbjct: 373 EDTLKCLKDIFENDKIEKVSHNIKVPYTVFKKMGINFTSVKFDTEIAAYLIDSSRGEYGL 432

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            SI Q +L                 D+I         ++ ++++  ++  L  ++    +
Sbjct: 433 NSIIQDYLKIML---------QGEEDEIR--------VKENSLLKDVFETLNKQIKELNM 475

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +   +++P+  V++ ME  G ++D   L+++  +    +  L+++IY L+ E+FN++S
Sbjct: 476 EELLYEVEQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDIYGLAEEEFNINS 535

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF KL  P   KTKTG + T A+ LEQ+    +PII+ I  +RQ +K+ STY 
Sbjct: 536 PKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEQLL-DKHPIIEKITYYRQFTKLYSTYI 593

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-K 744
           + L   I+K  + +H+ ++   T TGRL+S EPNLQNIPIK ++G++IR+ F+       
Sbjct: 594 EGLKAVIDKDGK-IHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFVPEDENSI 652

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           ++SADYSQIELR+LAHIA    L   F N  DIH   A+E+F V I++V+   R +AK +
Sbjct: 653 ILSADYSQIELRVLAHIADDENLIDAFLNHSDIHTKTASEVFKVPIDQVTKLQRSNAKAV 712

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF I+YGI  F LA  L+I R EA +YI  YF R+PG+  Y++        N YV TI  
Sbjct: 713 NFGIVYGIGDFSLAKDLKISRKEAKNYIDTYFERYPGVKRYMDNVIKQAEDNLYVTTIMN 772

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR    EI + K  ++   ER A+N PIQGSAADI + +M++V+  L+   L +K++LQ+
Sbjct: 773 RRRFIPEIKNSKKMVKAFGERLAMNTPIQGSAADIIKMSMVNVYNILKSKNLKSKVILQV 832

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           HDEL+  V ++E+    +++ + ME        LRVPL+V+I + +NW E 
Sbjct: 833 HDELILNVYKDELEEVKELVKNQMEDVM----KLRVPLEVDINLGDNWYEA 879



 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/293 (38%), Positives = 167/293 (56%), Gaps = 11/293 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L ++DG+S + RAFYA P L+    GL  N + GF  ML K+    R+E   ++
Sbjct: 1   MSKE-KLLILDGNSLMNRAFYALPPLTNSQ-GLHTNGVYGFVTMLLKM----REEINPNY 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR+  Y DYKA R ++PE L  Q P+V+       I   EI GFEADD+
Sbjct: 55  IVCTFDRSAPTFRHNEYKDYKAGRKRMPEELAEQFPVVKKLLNMLSISMFEIDGFEADDL 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AEK+   V I++ DKD +QL +    +  T K     E  D   +I ++ + P
Sbjct: 115 IGTLSVYAEKKDIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMISEFEVTP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++ L GD  DNIPG+PG+G KTA  L++EYG++EN+L N   I  KK +EN+++Y
Sbjct: 175 TQFIDVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSIENVLNNIDNISGKKIKENLMQY 234

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILED-CNGPRLISFLKALEFTKLINRV 288
           +E A  S+KL  +  +VPI I L  +  ++  +   + +    L+F  LI++V
Sbjct: 235 SEQAVFSKKLATIMVNVPIEIDLNEIKSKENYDVEGVKNLFIELQFKSLIDKV 287


>gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205]
 gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205]
          Length = 899

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 175/584 (29%), Positives = 297/584 (50%), Gaps = 12/584 (2%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
                  A    P+ +A++     +       T     +   +        L     S L
Sbjct: 318 TAWLGTHATADTPVGLAVTLDTGPNRRHVAGVTGMALATAAGAGAWFDPGRLEAADESAL 377

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW 512
             +  +E   K+ H+ K   L    +G S+ G   D  + +Y+    + S+D+  +A ++
Sbjct: 378 AGWLADETRPKVLHDSKPAVLAFAAHGWSIEGITRDTQIAAYLARPDQRSYDLVDLALRY 437

Query: 513 LSYTRKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVY 569
           L +    +       +  + +  D + +++ +  +   L L   +  +L    E+   + 
Sbjct: 438 L-HRELRVDTPDTGQLTFEGLGNDGEAEQNLMLRARATLDLADAIDAELSRDGEQSSRLM 496

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             ++ P++ V++ ME TGI  D   L ++ A+ +  + +  +  Y+  G +FNL SPKQL
Sbjct: 497 AGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAAQGAYEAVGREFNLGSPKQL 556

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
            +ILF +L  P   + KTG                +P++ ++L  R ++K+K+T  D L 
Sbjct: 557 QEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLGHLLRHRDVAKLKTT-VDGLL 615

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISA 748
             ++    R+HT ++     TGRL+S EPNLQNIPI+T+ G++IRRAF+       L++A
Sbjct: 616 KSVSDDG-RIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEGYECLLTA 674

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIE+RI+AH++    L   F +  D H   A+ +F V +E+V+   RR  K +N+ +
Sbjct: 675 DYSQIEMRIMAHLSADDVLIDAFNSGRDFHAATASSVFQVPVEEVTTDQRRKIKAMNYGL 734

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            YG+S F L+ QL +   EA   ++ YF  F G+ +Y+++     R +GY ET+ GRR +
Sbjct: 735 AYGLSAFGLSQQLGVTAEEARGLMEIYFAGFGGVRDYLQEVVARARHDGYTETVLGRRRY 794

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             ++ S     R + ER A+NAPIQGSAADI + AM+ V  ++ D  L ++MLLQ+HDEL
Sbjct: 795 LPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMMRVDSAVHDAGLRSRMLLQVHDEL 854

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           VFEV   E     +++   M +A      L VPL+V++    +W
Sbjct: 855 VFEVAPGERERLEELVRREMGEA----YPLSVPLEVSVGDGRDW 894



 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 160/331 (48%), Gaps = 10/331 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ R     +H A
Sbjct: 5   KPRLLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDER----PTHIA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    +FR E Y  YKA R + P     Q+ LV+    A  +PA+E++G+EADD+IA
Sbjct: 61  VAFDVSRRSFRTEKYAAYKAGRSETPADFKGQVSLVKEILAALRVPAVELEGYEADDVIA 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEK 178
           T T  A ++G +V I + D+D  QLV     +    K      ++D   V  K+G+PPE 
Sbjct: 121 TLTRQAREQGMSVLITTGDRDAFQLVDDDVTVLYPRKGVSDLARMDPAAVTAKYGVPPEL 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DN+PGIPG+G KTAA  +  YG +E I+  A  IK  K   N+ E   
Sbjct: 181 YRDLAALVGETSDNLPGIPGVGPKTAAKWITTYGGVEGIVARADEIKG-KAGVNLRERLA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               + ++  L  D+ + +  E  +    +   +      LEF  L +R+    +     
Sbjct: 240 DVIRNHEINWLVADLDLPLRPEDTLWAGWDREAVHQVFDTLEFRILRDRLYQYLEAVEPE 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
            E           +  A+   +    T  T 
Sbjct: 300 AEAGFDLAGEVLVEPGALTAWLGTHATADTP 330


>gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328]
 gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328]
          Length = 875

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 200/660 (30%), Positives = 362/660 (54%), Gaps = 18/660 (2%)

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
           +   I     + LS +   IN++  P+ L    ++  +    +ND   +++   +   ++
Sbjct: 227 KQKVIDGEDIAYLSRELGTINTD-VPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFI 285

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           +KL    S + K   + +D    +    A    ++K   +   +  ++D         T 
Sbjct: 286 KKLPNEES-NEKFEYENLDEKVDEI--KAYIKENKKFTFALFNDDYYVDNEPVIFAIYTD 342

Query: 442 KNTLTK--EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDS 498
           K  +T+  E++   K+ FE++   K+  +IK     L RYGI +   ++D++++ Y+LD 
Sbjct: 343 KVYITRNVELVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDP 402

Query: 499 GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
            ++S+ +     K + Y     ++I    KS   I +  + ++  + ++      +L+  
Sbjct: 403 SKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEK 462

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           +  ++  E ++H+Y  ++ P+I V+  ME TG+ + ++ L ++       + S+E+++ +
Sbjct: 463 I-SEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEKSVEE 521

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           L G+K N++S KQL ++LF  L+ P   K KTG   +T Q++ +   G + II  IL +R
Sbjct: 522 LIGKKININSSKQLAEVLFEDLELPVIKKNKTG--PSTDQEVLEALSGRHEIIDYILRYR 579

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            ++K+K+TY D + + I K  + +HT +      TGR++S  PNLQNIPI+T+ G+ IR+
Sbjct: 580 TITKLKTTYIDGMVDLIKKDGK-IHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRK 638

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF+      L+ ADYSQIELR+LA +A    +   F++  DIHR  A+E+F V+ +KV+ 
Sbjct: 639 AFVPSEGNMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTS 698

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R +AK +NF I+YGI  + L+  L I R EA +YI+ Y   + GI +Y+E      ++
Sbjct: 699 LQRSNAKAVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKE 758

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYVETI  RR +  E+ S   ++R+  ER A+N PIQGSAADI + AM+  +  L + K
Sbjct: 759 KGYVETIMNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEK 818

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L  K++LQ+HDEL+ + P++E     +I+   M  A    ++L+V +K+++  ++NW + 
Sbjct: 819 LKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADNWYDA 874



 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 99/314 (31%), Positives = 170/314 (54%), Gaps = 14/314 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+    ++DGSS ++R FYA   L+ K DG+  N + GF NM + ++     +     
Sbjct: 1   MSKKA--LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMGKINPDL---- 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E Y +YK NR + PE L+ Q  +++   +A G+  I+++G+EADDI
Sbjct: 54  VVVCFDRKEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
             T    A  + + V +++ DKD +QL+   T +  T +     +  D++ + +++GI P
Sbjct: 114 AGTLAKQASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDVLKEEYGITP 173

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++M+ L+ L GD  DNIPGI G+G KTA   +Q+YG++E +  +   I  KK ++ +++ 
Sbjct: 174 KQMIDLKGLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDG 233

Query: 237 AETARLSRKLVMLRTDVPIT---IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            + A LSR+L  + TDVP       +E   +++ +   LI  L  LEF   I ++     
Sbjct: 234 EDIAYLSRELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKLPNEES 293

Query: 294 CDAANIEPVVLDIN 307
            +    E +   ++
Sbjct: 294 NEKFEYENLDEKVD 307


>gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
 gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
          Length = 875

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 199/660 (30%), Positives = 362/660 (54%), Gaps = 18/660 (2%)

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
           +   I     + LS +   IN++  P+ L    ++  +    +ND   +++   +   ++
Sbjct: 227 KQKVIDGEDIAYLSRELGTINTD-VPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFI 285

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           +KL    S + K   + +D    +    A    ++K   +   +  ++D         T 
Sbjct: 286 KKLPNEES-NEKFEYENLDEKVDEI--KAYIKENKKFTFALFNDDYYVDNEPVIFAIYTD 342

Query: 442 KNTLTK--EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDS 498
           K  +T+  +++   K+ FE++   K+  +IK     L RYGI +   ++D++++ Y+LD 
Sbjct: 343 KVYITRNVDLVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDP 402

Query: 499 GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
            ++S+ +     K + Y     ++I    KS   I +  + ++  + ++      +L+  
Sbjct: 403 SKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYIVKYMMFTNKLYEK 462

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           +  ++  E ++H+Y  ++ P+I V+  ME TG+ + ++ L ++       + S+E+++ +
Sbjct: 463 I-SEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEDSVEE 521

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           L G+K N++S KQL ++LF  L+ P   K KTG   +T Q++ +   G + II  IL +R
Sbjct: 522 LIGKKININSSKQLAEVLFEDLELPVIKKNKTG--PSTDQEVLEALSGRHEIIDYILRYR 579

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            ++K+K+TY D + + I K  + +HT +      TGR++S  PNLQNIPI+T+ G+ IR+
Sbjct: 580 TITKLKTTYIDGMVDLIKKDGK-IHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRK 638

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF+      L+ ADYSQIELR+LA +A    +   F++  DIHR  A+E+F V+ +KV+ 
Sbjct: 639 AFVPSGGNVLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTS 698

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R +AK +NF I+YGI  + L+  L I R EA +YI+ Y   + GI +Y+E      ++
Sbjct: 699 LQRSNAKAVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKE 758

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYVETI  RR +  E+ S   ++R+  ER A+N PIQGSAADI + AM+  +  L + K
Sbjct: 759 KGYVETIMNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEK 818

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L  K++LQ+HDEL+ + P++E     +I+   M  A    ++L+V +K+++  ++NW + 
Sbjct: 819 LKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADNWYDA 874



 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 99/314 (31%), Positives = 170/314 (54%), Gaps = 14/314 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+    ++DGSS ++R FYA   L+ K DG+  N + GF NM + ++     +     
Sbjct: 1   MSKKA--LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMGKINPDL---- 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E Y +YK NR + PE L+ Q  +++   +A G+  I+++G+EADDI
Sbjct: 54  VVVCFDRKEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
             T    A  + + V +++ DKD +QL+   T +  T +     +  D++ + +++GI P
Sbjct: 114 AGTLAKQASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDALKEEYGITP 173

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++M+ L+ L GD  DNIPGI G+G KTA   +Q+YG++E +  +   I  KK ++ +++ 
Sbjct: 174 KQMIDLKGLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDG 233

Query: 237 AETARLSRKLVMLRTDVPIT---IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            + A LSR+L  + TDVP       +E   +++ +   LI  L  LEF   I ++     
Sbjct: 234 EDIAYLSRELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKLPNEES 293

Query: 294 CDAANIEPVVLDIN 307
            +    E +   ++
Sbjct: 294 NEKFEYENLDEKVD 307


>gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
 gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
          Length = 875

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 198/660 (30%), Positives = 362/660 (54%), Gaps = 18/660 (2%)

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
           +   I     + LS +   IN++  P+ L    ++  +    +ND   +++   +   ++
Sbjct: 227 KQKVIDGEDIAYLSRELGTINTD-VPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFI 285

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           +KL    S + K   + +D    +    A    ++K   +   +  ++D         T 
Sbjct: 286 KKLPNEES-NEKFEYENLDGKVDEI--KAYIKENKKFTFALFNDDYYVDNEPVIFAIYTD 342

Query: 442 KNTLTK--EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDS 498
           K  +T+  +++   K+ FE++   K+  +IK     L RYGI +   ++D++++ Y+LD 
Sbjct: 343 KVYITRNVDLVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDP 402

Query: 499 GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
            ++S+ +     K + Y     ++I    KS   I +  + ++  + ++      +L+  
Sbjct: 403 SKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEK 462

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           +  ++  E ++H+Y  ++ P+I V+  ME TG+ + ++ L ++       + S+E+++ +
Sbjct: 463 I-SEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEDSVEE 521

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           L G+K N++S KQL ++LF  L+ P   K KTG   +T Q++ +   G + II  IL +R
Sbjct: 522 LIGKKININSSKQLAEVLFEDLELPVIKKNKTG--PSTDQEVLEALSGRHEIIDYILRYR 579

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            ++K+K+TY D + + I +  + +HT +      TGR++S  PNLQNIPI+T+ G+ IR+
Sbjct: 580 TITKLKTTYIDGMVDLIKEDGK-IHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRK 638

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF+      L+ ADYSQIELR+LA +A    +   F++  DIHR  A+E+F V+ +KV+ 
Sbjct: 639 AFVPSEGNMLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTS 698

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R +AK +NF I+YGI  + L+  L I R EA +YI+ Y   + GI +Y+E      ++
Sbjct: 699 LQRSNAKAVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKE 758

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYVETI  RR +  E+ S   ++R+  ER A+N PIQGSAADI + AM+  +  L + K
Sbjct: 759 KGYVETIMNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEK 818

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L  K++LQ+HDEL+ + P++E     +I+   M  A    ++L+V +K+++  ++NW + 
Sbjct: 819 LKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADNWYDA 874



 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 99/314 (31%), Positives = 170/314 (54%), Gaps = 14/314 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+    ++DGSS ++R FYA   L+ K DG+  N + GF NM + ++     +     
Sbjct: 1   MSKKA--LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMGKINPDL---- 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E Y +YK NR + PE L+ Q  +++   +A G+  I+++G+EADDI
Sbjct: 54  VVVCFDRKEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
             T    A  + + V +++ DKD +QL+   T +  T +     +  D++ + +++GI P
Sbjct: 114 AGTLAKQASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDALKEEYGITP 173

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++M+ L+ L GD  DNIPGI G+G KTA   +Q+YG++E +  +   I  KK ++ +++ 
Sbjct: 174 KQMIDLKGLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDG 233

Query: 237 AETARLSRKLVMLRTDVPIT---IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            + A LSR+L  + TDVP       +E   +++ +   LI  L  LEF   I ++     
Sbjct: 234 EDIAYLSRELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKLPNEES 293

Query: 294 CDAANIEPVVLDIN 307
            +    E +   ++
Sbjct: 294 NEKFEYENLDGKVD 307


>gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
 gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 207/531 (38%), Positives = 307/531 (57%), Gaps = 19/531 (3%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQ 510
             K+F E        ++ K  K++L+R G++++    D  L  Y+L S   +++I++IA 
Sbjct: 5   IFKEFLEKTSLK--VYDFKKAKVLLNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIAS 61

Query: 511 KWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +      +      K  K +IP       +  EH      V+++   +L  KL     L
Sbjct: 62  LYSQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQL 117

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +   +++P+  V+++MEI GI++ ++ L ++ AE    +  L + IY+L+GE+FN++SP
Sbjct: 118 DLLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSP 177

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG +LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY  
Sbjct: 178 KQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVI 237

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKL 745
            L + I    + +HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+       L
Sbjct: 238 GLQDWILDDGK-IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVL 296

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTI 804
           +S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   E V+P  RR+AK +
Sbjct: 297 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 356

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF ++YGIS F LA  L I R +A  YI  YF RFPGI  Y+E+     R  GYVET+F 
Sbjct: 357 NFGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFK 416

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L +    TKMLLQ+
Sbjct: 417 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQV 476

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           HDE+V EVP+ E+     ++  +ME+A    I L VPL  +      W E 
Sbjct: 477 HDEIVLEVPKSELAAVKDLVKQTMEEA----IQLSVPLIADENEGATWYEA 523


>gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302]
 gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302]
          Length = 680

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 246/787 (31%), Positives = 377/787 (47%), Gaps = 115/787 (14%)

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           +  IG KT   LL E+G+LE I                 E  ++ + S+           
Sbjct: 1   MTKIGEKTGIKLLLEHGSLEGIY----------------ENIDSMKASK----------- 33

Query: 256 TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIA 315
                  + E+    +  +FL         ++   T D  A    P+ + ++     G  
Sbjct: 34  -------MKENLVNDKEQAFL---------SKTLATIDTKA----PIEIGLDDLVYNGPD 73

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
           IE        +   Q      Q   ++S   P+ L    +  +SQ  ++ DS        
Sbjct: 74  IENLGKFYDEMGFKQLK----QALNVSSTDAPESLDFTIVDHVSQDMLSADS-------- 121

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                           F       +      +  A S  D K   + K+E +   +    
Sbjct: 122 ---------------IFHFELFGENYHTDDLVGFAWSCGD-KLYATDKLELLQNPI---- 161

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSY 494
                            LK F E        ++ K  K++L+R+G+ ++    D  L  Y
Sbjct: 162 -----------------LKDFLE--KTPLKVYDFKKAKVLLNRFGLDLQAPAFDSRLAKY 202

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           +L S   +++I++IA  +      +      K  K +IP          EH      V++
Sbjct: 203 LL-STVENNEISTIASLYGQTYLVDDETFYGKGVKKAIP----ERETFLEHLARKVAVLV 257

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           +   +L  KL     L++   +++P+  V+++MEI GI++ ++ L ++ A     +  L 
Sbjct: 258 ETEPVLLEKLSENGQLNLLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAGNELVIEKLT 317

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           + IY+L+GE+FN++SPKQLG++LF  L FP     KT    +TA D+ +      PI+K 
Sbjct: 318 QEIYELAGEEFNINSPKQLGELLFENLGFPIEYTKKTKTGYSTAVDVLERLAPIAPIVKK 377

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           IL++RQ++KI+STY   L + I    + +HT Y    T TGRL+S++PNLQNIP++ + G
Sbjct: 378 ILDYRQIAKIQSTYVIGLQDWILADGK-IHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQG 436

Query: 731 QKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           + IR+AF+       L+S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+ 
Sbjct: 437 RLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIE 496

Query: 790 -IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
             E V+P  RR+AK +NF ++YGIS F L+  L I R EA  YI  YF RFPGI  Y+++
Sbjct: 497 RPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDE 556

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
                R  GYVET+F RR    +INS   +IR   ER AIN+PIQGSAADI + AMI + 
Sbjct: 557 VVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLD 616

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           K+L      TKMLLQ+HDE+V EVP+ E+    +I+  +ME+A    I L VPL  +   
Sbjct: 617 KALVAGGYQTKMLLQVHDEIVLEVPKSELAAIKKIVKQTMEEA----IQLSVPLIADENE 672

Query: 969 SNNWQEE 975
              W E 
Sbjct: 673 GVTWYEA 679


>gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
 gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
          Length = 878

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 203/532 (38%), Positives = 315/532 (59%), Gaps = 22/532 (4%)

Query: 458 ENEHFLKIGHNIKY-------DKLVLHRYGISMRGFE----DIMLMSYVLDSGRSSHDIA 506
           E+    KI   +K        D   L  +   +R +E    D+ + +Y+L+  +S++D  
Sbjct: 354 EDYLKEKITELLKEGTELIVLDYKALLHFSEEVREYESQIQDVGIQAYLLNPLQSAYDYE 413

Query: 507 SIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            IA+ +L      RKE+   +       +  + +  + A   S V    + L+  KL   
Sbjct: 414 DIARDYLRQMLPSRKEVCGKKALEEVFSQ-EEEKTVQMAAYLSYVPFHAYPLVLEKLREA 472

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           ++  +Y  +++P +  +  ME  GI +++D LK+   ++   +  LE+NIY+ +G+ FN+
Sbjct: 473 EMEELYLTIERPTVATLYDMEKYGITVEKDALKEYGDQLVGRIEELEKNIYEQAGKTFNI 532

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG ILF  LK P   KTKTG   +T+ D+ +    D PI+ NILE+RQL+K+KST
Sbjct: 533 NSPKQLGVILFEDLKMPFAKKTKTGY--STSADILEKLAPDYPIVSNILEYRQLTKLKST 590

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           YAD L   I +  + +H+ +    T TGRL+S +PNLQNIPI+  LG+ IR+ F+     
Sbjct: 591 YADGLAAFIQEDGK-IHSIFHQKVTATGRLSSSDPNLQNIPIRMPLGRAIRKVFVPDSGY 649

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             +SADYSQIELR+LAH+A    L   + +  DIHRM A+++FGV  E+V+P +RR AK 
Sbjct: 650 VFVSADYSQIELRVLAHMAGDEHLIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKA 709

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS F L+  L+I R EA++YI +YF  +PGI  Y++    F ++ GYV+T++
Sbjct: 710 VNFGIVYGISAFGLSQDLKISRKEASEYIDKYFATYPGIKTYLDGNVAFAKKEGYVKTLY 769

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GR     E++S     R+  ER A+N+ IQG+AADI + AMI V K L++ KLA++++LQ
Sbjct: 770 GRVRPIPELSSSNFMQRSFGERVAMNSSIQGTAADIIKIAMIRVSKRLQEEKLASRLILQ 829

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           IHDEL+ E  E+E+    +I+   M  A     +L+VPL ++I+    W E 
Sbjct: 830 IHDELLIETKEDEVEEVRKILKEEMMGAA----DLKVPLSIDIEEGKTWYEA 877



 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 100/328 (30%), Positives = 158/328 (48%), Gaps = 11/328 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + + L+DG S + RAFY  P L+   +G   NA+ GF N++ + ++  +     +H  V 
Sbjct: 3   DKIMLLDGHSLLNRAFYGLPDLTNA-EGKHTNAVLGFLNIMLRYVEEEK----PTHLLVA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R  +P  L  Q+PL++   +   IP I   G EADDI+ T 
Sbjct: 58  FDRKEPTFRHIKYKEYKGTRKPMPAELHEQVPLMKEVLKTMEIPIITQAGIEADDILGTI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
              AE+ GF V I+S D+DL+QL +    +     +      E    E V + +G+ P +
Sbjct: 118 GKEAEEAGFDVAIVSGDRDLLQLATKKVKIKIPKTKASGTVTEDYYEEDVRELYGVSPTE 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++ L GD+ DNIPG+PGIG KTAA +++EY ++EN   +   IK  + + N+ EY E
Sbjct: 178 FIDMKGLMGDTSDNIPGVPGIGEKTAAKIIKEYHSIENAHEHIEEIKPARAKNNLQEYYE 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +S+ L  ++ D  I+   +   +            K LE   L          +   
Sbjct: 238 QAIMSKDLATIKKDCDISYDFKDAKIGTLFTKDAYQLFKELELKSLFKYFGEDEKEEETL 297

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTI 326
                 D+   EN   +I+ E      I
Sbjct: 298 EVVSTFDLGEIENAFTSIKEEGQAALGI 325


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 233/802 (29%), Positives = 405/802 (50%), Gaps = 51/802 (6%)

Query: 185 LTGDSIDNIPG-IPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAETA 240
           L G   D++ G I  +  +    +L   G+ + + + + ++K    KK    + E+ E A
Sbjct: 65  LEGYEADDLIGTISKLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKA 124

Query: 241 RLSRKLVMLRTDVPITI---PLEHLILEDCNGPR--LISFLKALEFTKLINRVATTYDCD 295
            L R  +     + +          I    N      I  LK     + + +  +     
Sbjct: 125 VLERYEITPYQFIDLKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLQNLSQLKGK 184

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                    ++     +   I+ +I  +   +  +    +++       +      ++ +
Sbjct: 185 IKENIENNKELAVMSKRLATIKRDIPIEIDFEEYRVKDFNEEKLLEIFNKLEFFSLIDSI 244

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K     I N+   +     DI++ +  L+   + +F  +      +  +   IA S   
Sbjct: 245 KKKDNVEIVNNHKVQKWPKIDIRKLITLLQDSRNIAFYPL-----IYEGEIKKIAFS--- 296

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                 F   T++ID+          +    +     +K F      +K+ +        
Sbjct: 297 ------FGSNTVYIDIFQIEDLKEIFEKEEFEFTTHEIKDFL-----VKLSYK------- 338

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPID 531
               GI  +  + D  +M+Y+L+   S++D+  + +K+L       +E+    +    ++
Sbjct: 339 ----GIECKSKYIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLE 394

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +I +  + ++       +  L   L   +    +  +   ++ P+++V+  ME++G  +D
Sbjct: 395 EIREDVLADYICSRCVHLFDLREKLMNFIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLD 454

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +++LK++S +I   +  + + IY  +G +FN++SPKQL + LF KL  P   KTKTG + 
Sbjct: 455 KEVLKELSQKIDDRIAEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YS 513

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T ++ LEQ+    N ++ +I+E+RQL+K+KSTY D     +++   RVH+ +    T TG
Sbjct: 514 TDSEVLEQL-VPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMDE-NNRVHSNFKQMVTATG 571

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQV 770
           R++S EPNLQNIPI+ + G++IRRAFI       ++SADYSQIELR+LAH++    L + 
Sbjct: 572 RISSTEPNLQNIPIREEFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIES 631

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N+ DIH   AAE+F V +EKV+P+MRR AK +NF IIYGIS + L+  L+I R EA +
Sbjct: 632 FMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKE 691

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI  YF R+ G+ EYIEK   F ++NGYV TI  RR +  EINS   + R+  ER A+NA
Sbjct: 692 YINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNA 751

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AM+ V++  +  +L ++++LQ+HDELV +  ++E+    +I+  +ME 
Sbjct: 752 PIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVDIVKKILKENMEN 811

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
                I L+VPL V I +  NW
Sbjct: 812 V----IKLKVPLVVEIGIGPNW 829



 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/263 (36%), Positives = 156/263 (59%), Gaps = 9/263 (3%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML KL++  + +    + A+ FD  A TFR++ Y DYKA R  +PE L  Q+ L++    
Sbjct: 1   MLIKLIEEEKPD----YIAIAFDKKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIID 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--- 160
            F I  +E++G+EADD+I T + +AE++G  V +++ D+D +QLVS    +  + K    
Sbjct: 57  GFNIKTLELEGYEADDLIGTISKLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQ 116

Query: 161 -EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            E+ D + V++++ I P + + L+ L GD  DNIPGIP IG KTA  LL+E+G++EN+L 
Sbjct: 117 MEEFDEKAVLERYEITPYQFIDLKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLQ 176

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
           N S++K  K +ENI    E A +S++L  ++ D+PI I  E   ++D N  +L+     L
Sbjct: 177 NLSQLKG-KIKENIENNKELAVMSKRLATIKRDIPIEIDFEEYRVKDFNEEKLLEIFNKL 235

Query: 280 EFTKLINRVATTYDCDAANIEPV 302
           EF  LI+ +    + +  N   V
Sbjct: 236 EFFSLIDSIKKKDNVEIVNNHKV 258


>gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 694

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 195/777 (25%), Positives = 344/777 (44%), Gaps = 92/777 (11%)

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           KTAA  + ++G+   ++     +K  K  +N+ ++ E  +L+R+L  +   V +   +  
Sbjct: 1   KTAAKWINQFGSFAELVERVEEVKG-KAGQNLRDHLEAVKLNRRLTEMVRTVELPKTVTD 59

Query: 262 LILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANIEPVVLDINTTENKGIAIETE 319
           L     +   L   L  LE     L  R+                               
Sbjct: 60  LERAPYDRKSLAMILDTLEIRNPSLRERL------------------------------- 88

Query: 320 IDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQ 379
           +  D   + ++ + ++     ++                            ++ T ++  
Sbjct: 89  LAVDPGAEEAEGAPVAAPGVAVDG--------------------------TVLGTGELAG 122

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS 439
           W+ +           +             +   ++ +    +      + D S     D 
Sbjct: 123 WLAEHGAGQPLGLATVDTW---------GLGTGSVAEVALAASGGAAAWFDPSELDEADE 173

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS 498
                           +  +    K+ HN K    V   +  S+ G   D  L +Y++  
Sbjct: 174 -----------RAWVAWLADAERPKVLHNAKGAMRVFAEHDWSVAGVSMDTALAAYLVKP 222

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR 557
           GR S D+ +++ ++L    +E+     +   +   +D   +  A+   +  +L L     
Sbjct: 223 GRRSFDLDALSLEYLG---RELAPPAAADGQLAFGADDGAEAEALMVQARAVLDLGSAFE 279

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            +L       +   ++ P   ++++ME  GI  D+  L+ +    +  +    +  +  +
Sbjct: 280 GRLAEVGAADLLRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHGAA 339

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           G +FNL SPKQL ++LF +L  P   KTKTG               DN +   +L  R+ 
Sbjct: 340 GHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLATQTDNELPVIMLRHREQ 399

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           +K++ T  + L   I     R+HT ++     TGRL+S +PNLQNIP++TD G+ IRR F
Sbjct: 400 AKLRVT-VEGLIKTIAADG-RIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGF 457

Query: 738 ISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           +     + L++ADYSQIELR++AH+++   L + F +  D+H   A+++F V    V  +
Sbjct: 458 VVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTAASQVFAVEPGAVDAE 517

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MRR  K +++ + YG+S F L+ QL I   EA   +  YF RF G+ +Y+ +  +  R  
Sbjct: 518 MRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEARALMDAYFERFGGVRDYLRRAVDEARAT 577

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GY  T+FGRR +  ++NS     R   ER A+NAPIQG+AADI + AM+ V  +L D  L
Sbjct: 578 GYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLKVDGALRDAGL 637

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           A++MLLQ+HDE+V EV   E   A +I+   M  A    ++LRVPL V++   ++W+
Sbjct: 638 ASRMLLQVHDEIVLEVAPGERGVAEEIVRREMSDA----VDLRVPLGVSVGDGSDWE 690


>gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515]
 gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515]
          Length = 880

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/671 (33%), Positives = 350/671 (52%), Gaps = 29/671 (4%)

Query: 315 AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
           A++    ++  I   + + LS   + IN   +P  + LE +       I   S  +  + 
Sbjct: 228 AMKQSKMKENLINDKEQAFLSKTLATINI-ASPITIGLEDILYSGPQDIKALS--QFYDE 284

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVETIFIDL 431
            D +Q+   L    S       D  +    KP   +       +   D     + I I  
Sbjct: 285 MDFKQFKAALGEETS-QEDFEVDFTEVEQLKPEMFSDNDFYYFEMLGDNYHVEDLIGIAW 343

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIM 490
               +  +T   +L +E L   KK           ++ K  K++L+R+ I +     D  
Sbjct: 344 GNSDTIYATSDVSLLQEAL--FKKALSKP---IKTYDFKRSKVLLNRFNIDLPEPAFDTR 398

Query: 491 LMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           L  Y+L S    + +++IA+ +    L        K  K +IP      ++  EH  +  
Sbjct: 399 LAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRFLEHLAKKV 453

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            V++     +  +L   +   +   +++P+ +V+++MEI GI++ ++ L +++ E  K +
Sbjct: 454 KVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVI 513

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
            +L + IY+L+G++FN++SPKQLG +LF  L  P     KT    +TA D+ +     +P
Sbjct: 514 ETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISP 573

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           ++  ILE+RQ++K++STY   L ++I +  + +HT Y    T TGRL+S +PNLQNIP++
Sbjct: 574 LVTKILEYRQITKLQSTYIIGLQDYILEDGK-IHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 727 TDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
            + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L   F+   DIH   A  +
Sbjct: 633 LEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRV 692

Query: 786 FGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           FG+   E V+P  RR+AK +NF I+YGIS F L+  L IPR  A  YI  YF R+PGI  
Sbjct: 693 FGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E      +  GYVET+F RR    +INS   +IR   ER AIN+PIQGSAADI + AM
Sbjct: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I++ + L      +KMLLQ+HDE+V EVP EEI    +++  +ME A    I+L VPL  
Sbjct: 813 INLDRVLYKGGYKSKMLLQVHDEIVLEVPNEEIGAIKELVTKTMESA----ISLSVPLIA 868

Query: 965 NIKVSNNWQEE 975
           +      W E 
Sbjct: 869 DENAGETWYEA 879



 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/320 (35%), Positives = 162/320 (50%), Gaps = 14/320 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +N L L+DGSS  +RAF+A        + + GL  NAI GF  ML  +L   +    
Sbjct: 1   MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E++ +EA
Sbjct: 57  PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEA 116

Query: 118 DDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T    AE  KE F +T++S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLAKQAEASKEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N   +KQ K +E
Sbjct: 177 MGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINRVAT 290
           N++   E A LS+ L  +    PITI LE ++     +   L  F   ++F +    +  
Sbjct: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE 296

Query: 291 TYDCDAANIEPVVLDINTTE 310
               +   ++   ++    E
Sbjct: 297 ETSQEDFEVDFTEVEQLKPE 316


>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
 gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
          Length = 834

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 195/567 (34%), Positives = 319/567 (56%), Gaps = 47/567 (8%)

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           +   +S   +      K      D  VH ++D        +E+   L             
Sbjct: 309 VGFVLS-RPEPMWAELKALAACRDGRVHRAEDPLAGLGDLEEVRGLL------------- 354

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
              K   ++  R G+ +   +D ML++Y+LD   ++ +   +A+++     ++       
Sbjct: 355 --AKDLAVLALREGLDLAPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTED------- 403

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEI 585
                          A   + +  +L   L  +L   EKLL +Y  ++KP+  V++ ME 
Sbjct: 404 ---------------AAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLSRVLAHMEA 448

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG+++D   L+ +S E+++ +  LEE ++ L+G  FNL+S  QL  +LF +L+ P+  KT
Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLFDELRLPALGKT 508

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +    ++T+  + +     +PI++ IL+ R+L+K+K+TY D LP+ ++ RT R+HT ++ 
Sbjct: 509 QKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTRFNQ 568

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
            +T TGRL+S +PNLQNIP++T LGQ+IRRAF++     L++ DYSQIELR+LAH++   
Sbjct: 569 TATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDE 628

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L +VF+   DIH   A+ +FGV  E V P MRR AKT+NF ++YG+S  RL+ +L IP 
Sbjct: 629 NLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPY 688

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I+RYF  FP +  +IEKT    R+ GYVET+FGRR +  ++N+   S+R   ER
Sbjct: 689 EEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAER 748

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A N P+QG+AAD+ + AM+ +   L +  +  +MLLQ+HDEL+ E P+      + +  
Sbjct: 749 MAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARMLLQVHDELLLEAPQARAEEVAALAK 806

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
            +MEKA      L VPL+V + +  +W
Sbjct: 807 EAMEKA----YPLAVPLEVEVGIGEDW 829



 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 115/344 (33%), Positives = 175/344 (50%), Gaps = 12/344 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+    +S     
Sbjct: 9   ESKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKS----V 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD++
Sbjct: 64  FVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVL 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    AEKEG+ V I++ D+DL QLVS    +        I  E + +K+G+ PE+ V 
Sbjct: 124 ATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPE-GHLITPEWLWEKYGLRPEQWVD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DN+PG+ GIG KTA  LL+E+G+LE++L N  R+K +  RE I  + E  R
Sbjct: 183 FRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLESLLKNLDRVKPENVREKIKAHLEDLR 242

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----ATTYDCDAA 297
           LS +L  +R D+P+ + L      + +   L +FL+ LEF  L++      A T   +A 
Sbjct: 243 LSLELSRVRADLPLEVDLAQ--GREPDREGLRAFLERLEFGSLLHEFGLLEAPTPLEEAP 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
              P    +    ++   +  E+      +  +     D  + +
Sbjct: 301 WPPPEGAFVGFVLSRPEPMWAELKALAACRDGRVHRAEDPLAGL 344


>gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 437

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 199/438 (45%), Positives = 290/438 (66%), Gaps = 6/438 (1%)

Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKS 523
           N+KYD+ VL  YGI +RG   D ML SY+L+S    HD+ S++ +WL +     ++I   
Sbjct: 1   NLKYDRGVLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGK 60

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQ 582
            K+ +  ++I+  +   +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S+
Sbjct: 61  GKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSR 120

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           +E  G++ID  +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K      
Sbjct: 121 VERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPL 180

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT 
Sbjct: 181 KKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTS 239

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           Y  A T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH++
Sbjct: 240 YHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 299

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L   F    DIHR  AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL 
Sbjct: 300 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLN 359

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IPR EA  Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R  
Sbjct: 360 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAG 419

Query: 883 NERAAINAPIQGSAADIT 900
            ERAAINAP+QG+AADI 
Sbjct: 420 AERAAINAPMQGTAADII 437


>gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7]
          Length = 877

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 179/492 (36%), Positives = 295/492 (59%), Gaps = 8/492 (1%)

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK--SRKSSIPIDKISDSQVQEHA 542
           G  D  + +Y+++  + S+    IAQ +L  T         + +     +        + 
Sbjct: 390 GIFDAAIAAYLINPLKDSYTYDGIAQDFLGMTVPSRADWLKKMTLTEASEKEKESFGHYL 449

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
             ++ + +Q +  L+ +L    +  +++ ++ P++  +  ME  GI +++D L +  + +
Sbjct: 450 AYSAMIPVQAYSTLKKRLEETGMDRLFDEIEMPLVYALYDMEKAGIAVEKDALAEYGSRL 509

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  +  LE+NIY+L+GE FN++SPKQLG ILF KL  P   KTKTG   +T+ D+ +   
Sbjct: 510 TGRIDELEKNIYELAGESFNINSPKQLGIILFEKLGLPFAKKTKTGY--STSADILEKLR 567

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
             +PI+  ILE+RQL+K+KSTYAD L  +I    QR+H  ++   T TGR++S EPNLQN
Sbjct: 568 TYDPIVGQILEYRQLTKLKSTYADGLAGYIRPDDQRIHGKFNQTITATGRISSTEPNLQN 627

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++ +LG+ IR+ F+       ++ADYSQIELR+LAH+A    L Q ++ + DIHRM A
Sbjct: 628 IPVRMELGRLIRKVFVPKEDCIFVNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRMTA 687

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +++F    ++V+P  R +AK +NF I+YGIS F L+  L I + EA +YI++YF  +PGI
Sbjct: 688 SQVFHTPFDEVTPAQRSNAKAVNFGIVYGISSFGLSQDLSITKKEAENYIQQYFRTYPGI 747

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             +++++    ++ GY  T+FGRR    E+ S     R+  ER A+N+PIQG+AADI + 
Sbjct: 748 KAFLDRSVEDAKEKGYAVTLFGRRRPVPELLSSNFMQRSFGERIAMNSPIQGTAADIIKI 807

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM+ V++ L+   + ++++LQIHDEL+ E   +E+     I+   ME A      L VPL
Sbjct: 808 AMVRVNRRLKRQHMKSRLILQIHDELLIEAVLDEVDAVKAILKEEMEHAA----TLAVPL 863

Query: 963 KVNIKVSNNWQE 974
           ++++   +NW E
Sbjct: 864 EIDMHTGHNWYE 875



 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 113/408 (27%), Positives = 194/408 (47%), Gaps = 17/408 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG S + RA+Y  PLLS   +GL  NA+ GF N+++K+L   +    A + AV F
Sbjct: 3   KVILIDGHSILNRAYYGIPLLSNA-EGLHTNAVYGFLNIMFKILDEEK----ADYLAVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+E++  YK  R  +PE L  Q+P+++    A  IP +E  G+EADDI+ T  
Sbjct: 58  DVHAPTFRHEMFEAYKGTRKPMPEELREQVPVIKEVLHAMQIPTLEHAGYEADDILGTLG 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
              E  G+AV+IIS D+DL+QL +    +     +      E      V +K+ + P + 
Sbjct: 118 KAYEAAGYAVSIISGDRDLLQLATDKIKIRIPKTKMSGTEIEDYYAADVFEKYQVTPTEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PGIG KTA+ ++  + ++E    +A+ +K KK  EN++ Y E 
Sbjct: 178 IDMKALMGDTSDNIPGVPGIGEKTASKIISTWHSIEEAHAHAAELKPKKASENLVTYYEQ 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A+ S+ L  ++TD  +   LE   +         + LK LE   ++ R  +  +      
Sbjct: 238 AQFSKVLATIKTDCVLDFKLEDAAIGQMMNDASYALLKRLELKNILKRFDSVAETTVNYQ 297

Query: 300 EPVVLD-----INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
              VLD     ++  E  G   +  +   +       ++       +        +    
Sbjct: 298 TVKVLDDFAAAVSWLEGIGETDQLGLYYFSEDDFEGLAACKADNVPV-YIPAEGMMTAAV 356

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           L++++           +++ K    W++  E  G     I    ++  
Sbjct: 357 LREMAAAAAKRAGVCCMIDVKPQLYWLELSEEDGIFDAAIAAYLINPL 404


>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
 gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
          Length = 543

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 195/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 41  GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 95

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 96  TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 131

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 132 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 191

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 192 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 251

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 252 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 311

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 312 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 371

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 372 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 431

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 432 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 489

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 490 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 538


>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
 gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 195/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 38  GRVHRAPEPYKALRDLKEERGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 92

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 93  TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 128

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 129 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 188

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 189 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 248

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 249 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 308

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 309 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 368

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 369 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 428

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 429 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 486

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 487 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 535


>gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1]
 gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1]
          Length = 880

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/671 (33%), Positives = 351/671 (52%), Gaps = 29/671 (4%)

Query: 315 AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
           A++    ++  I   + + LS   + IN   +P  + LE +       I   S  +  + 
Sbjct: 228 AMKQSKMKENLINDKEQAFLSKTLATINI-ASPITIGLEDILYSGPQDIKALS--QFYDE 284

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVETIFIDL 431
            D +Q+   L    S       D  +    KP   +       +   D     + I I  
Sbjct: 285 MDFKQFKAALGEETS-QEDFEVDFTEVEQLKPEMFSDNDFYYFEMLGDNYHVEDLIGIAW 343

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIM 490
               +  +T   +L +E L   KK           ++ K  K++L+R+ I +     D  
Sbjct: 344 GNSDTIYATSDVSLLQEAL--FKKALSKP---IKTYDFKRSKVLLNRFNIDLPEPAFDTR 398

Query: 491 LMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           L  Y+L S    + +++IA+ +    L        K  K +IP      ++  EH  +  
Sbjct: 399 LAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRFLEHLAKKV 453

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            V++     +  +L   +   +   +++P+ +V+++MEI GI++ ++ L +++ E  K +
Sbjct: 454 KVLVDSEANVMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVI 513

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
            +L + IY+L+G++FN++SPKQLG +LF  L  P     KT    +TA D+ +     +P
Sbjct: 514 ETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISP 573

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           ++  ILE+RQ++K++STY   L ++I +  + +HT Y    T TGRL+S +PNLQNIP++
Sbjct: 574 LVTKILEYRQITKLQSTYIIGLQDYILEDGK-IHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 727 TDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
            + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L   F+   DIH   A  +
Sbjct: 633 LEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRV 692

Query: 786 FGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           FG+   E V+P  RR+AK +NF I+YGIS F L+  L IPR  A  YI  YF R+PGI  
Sbjct: 693 FGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E      +  GYVET+F RR    +INS   +IR   ER AIN+PIQGSAADI + AM
Sbjct: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I++ + L+     +KMLLQ+HDE+V EVP EEI    +++  +ME A    I+L VPL  
Sbjct: 813 INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIKELVTKTMESA----ISLSVPLIA 868

Query: 965 NIKVSNNWQEE 975
           +      W E 
Sbjct: 869 DENAGETWYEA 879



 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/320 (35%), Positives = 162/320 (50%), Gaps = 14/320 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +N L L+DGSS  +RAF+A        + + GL  NAI GF  ML  +L   +    
Sbjct: 1   MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E++ +EA
Sbjct: 57  PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEA 116

Query: 118 DDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T    AE  KE F +T++S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLAKQAEASKEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N   +KQ K +E
Sbjct: 177 MGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINRVAT 290
           N++   E A LS+ L  +    PITI LE ++     +   L  F   ++F +    +  
Sbjct: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE 296

Query: 291 TYDCDAANIEPVVLDINTTE 310
               +   ++   ++    E
Sbjct: 297 ETSQEDFEVDFTEVEQLKPE 316


>gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 195/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 38  GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 92

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 93  TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 128

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 129 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 188

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 189 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 248

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 249 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 308

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 309 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 368

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 369 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 428

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 429 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 486

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 487 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 535


>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
           Polymerase I From Thermus Aquaticus
          Length = 538

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 195/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 36  GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 90

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 91  TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 126

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 127 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 186

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 187 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 246

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 247 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 306

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 307 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 366

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 367 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 426

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 427 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 484

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 485 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 533


>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
           From T. Aquaticus Bound To A PrimerTEMPLATE DNA
          Length = 539

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 195/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 37  GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 91

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 92  TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 127

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 128 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 187

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 188 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 247

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 248 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 307

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 308 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 367

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 368 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 427

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 428 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 485

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 486 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 534


>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
           Large Fragment Of Dna Polymerase I From Thermus
           Aquaticus
 gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
 gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex
           Wi Abasic Site
 gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna
           Pol In Complex With A Blunt-Ended Dna And Ddatp
 gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Ethylated Dttp
 gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Methylated Dttp
 gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidines
 gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidies
          Length = 540

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 195/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 38  GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 92

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 93  TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 128

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 129 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 188

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 189 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 248

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 249 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 308

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 309 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 368

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 369 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 428

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 429 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 486

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 487 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 535


>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
          Length = 833

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 197/528 (37%), Positives = 310/528 (58%), Gaps = 39/528 (7%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           E L+ LK+          G   K   ++  R G+++   +D +L++Y+LD   +  +   
Sbjct: 342 EALADLKEA--------RGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANT--NPEG 391

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +A+++     ++                      A E + +  +L+  L P+L  EKLL 
Sbjct: 392 VARRYGGEFTED----------------------AAERALLSERLFQTLFPRL-SEKLLW 428

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y+ +++P+  V++ ME  G+++D  LL+ +S E+ K +  LE  ++ L+G  FNL+S  
Sbjct: 429 LYQEVERPLSRVLAHMEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPFNLNSRD 488

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  +LF +L      +T+    ++TAQ   +   G +PI++ IL++R+LSK+KSTY D 
Sbjct: 489 QLEKVLFDELGLTPVGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDP 548

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IR+AF++     L++
Sbjct: 549 LPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLA 608

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAH++    L +VF    DIH   AA +FG++   V P+MRR AKT+NF 
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+S  RL+ +L I   EA  +I+RYF  FP +  +IE+T    R  GYVET+FGRR 
Sbjct: 669 VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ S   S+R   ER A N P+QG+AAD+ + AM+ +   L+   L   +LLQ+HDE
Sbjct: 729 YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLK--PLGAHLLLQVHDE 786

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LV EVPE+    A  ++   ME A      L VPL+V + V  +W E 
Sbjct: 787 LVLEVPEDRAEEAKALVKEVMENA----YPLDVPLEVEVGVGRDWLEA 830



 Score =  307 bits (786), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 152/300 (50%), Gaps = 8/300 (2%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +    + LVDG    YR FYA  L      G PV  + GF   L K L+   +       
Sbjct: 9   EPPKRVLLVDGHHLAYRTFYALSL--TTSRGEPVQMVYGFARSLLKALKEDGQ-----AV 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++
Sbjct: 62  VVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVL 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    AE+EG  V I++ D+D  QL+S    +        +  + V +K+G+PPE+ V 
Sbjct: 122 GTLAKKAEREGMEVCILTGDRDFFQLLSEKVSVLLP-DGTLVTPKDVQEKYGVPPERWVD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DNIPG+ GIG KTA  LL E+G++EN+L N  R+K    R  I  + E  R
Sbjct: 181 FRALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLR 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++              P
Sbjct: 241 LSLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLHEFGLLGGEKPREEAP 300


>gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813]
          Length = 880

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/671 (33%), Positives = 352/671 (52%), Gaps = 29/671 (4%)

Query: 315 AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
           A++    ++  I   + + LS   + IN   +P  + LE +       I   S  +  + 
Sbjct: 228 AMKQSKMKENLINDKEQAFLSKTLATINI-ASPITIGLEDILYSGPQDIKALS--QFYDE 284

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVETIFIDL 431
            D +Q+   L    S       D  +    KP   +       +   D     + I I  
Sbjct: 285 MDFKQFKAALGEETS-QEDFEVDFTEVEQLKPEMFSDNDFYYFEMLGDNYHVEDLIGIAW 343

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIM 490
               +  +T   +L +E L   KK           ++ K  K++L+R+ I +     D  
Sbjct: 344 GNSDTIYATSDVSLLQEAL--FKKALSKP---IKTYDFKRSKVLLNRFNIDLPEPAFDTR 398

Query: 491 LMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           L  Y+L S    + +++IA+ +    L        K  K +IP      ++  +H  +  
Sbjct: 399 LAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRFLDHLAKKV 453

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            V++     +  +L V +   +   +++P+ +V+++MEI GI++ ++ L +++ E  K +
Sbjct: 454 KVLVDSEANIMQQLKVNEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVI 513

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
            +L + IY+L+G++FN++SPKQLG +LF  L  P     KT    +TA D+ +     +P
Sbjct: 514 ETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISP 573

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           ++  ILE+RQ++K++STY   L ++I +  + +HT Y    T TGRL+S +PNLQNIP++
Sbjct: 574 LVTKILEYRQITKLQSTYIIGLQDYILEDGK-IHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 727 TDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
            + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L   F+   DIH   A  +
Sbjct: 633 LEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRV 692

Query: 786 FGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           FG+   E V+P  RR+AK +NF I+YGIS F L+  L IPR  A  YI  YF R+PGI  
Sbjct: 693 FGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E      +  GYVET+F RR    +INS   +IR   ER AIN+PIQGSAADI + AM
Sbjct: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I++ + L+     +KMLLQ+HDE+V EVP EEI    +++  +ME A    I+L VPL  
Sbjct: 813 INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIKELVTKTMESA----ISLSVPLIA 868

Query: 965 NIKVSNNWQEE 975
           +      W E 
Sbjct: 869 DENAGETWYEA 879



 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/320 (35%), Positives = 162/320 (50%), Gaps = 14/320 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +N L L+DGSS  +RAF+A        + + GL  NAI GF  ML  +L   +    
Sbjct: 1   MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E++ +EA
Sbjct: 57  PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEA 116

Query: 118 DDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T    AE  KE F +T++S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLAKQAEASKEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N   +KQ K +E
Sbjct: 177 MGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINRVAT 290
           N++   E A LS+ L  +    PITI LE ++     +   L  F   ++F +    +  
Sbjct: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE 296

Query: 291 TYDCDAANIEPVVLDINTTE 310
               +   ++   ++    E
Sbjct: 297 ETSQEDFEVDFTEVEQLKPE 316


>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88]
 gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88]
          Length = 882

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 193/528 (36%), Positives = 316/528 (59%), Gaps = 27/528 (5%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASI 508
           +  LK  FE E    + H++K   + L +  +   +   D+ + +Y++DS +S +D++++
Sbjct: 379 IEILKTIFEKEAVRVVSHDVKVLSMALKKLDVEFTKALFDLKIAAYLIDSSKSDYDLSTL 438

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            Q+ LS   K+  +         +I ++ + E    N          L+ ++I  ++  +
Sbjct: 439 IQECLSKIVKDDEE--------REIRETSLLEKLCAN----------LKEQIINLEMEKL 480

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           Y  ++ P+  V++ ME+ G ++D ++L+ +  ++ + +  +++ IY+L+ E+FN++SPKQ
Sbjct: 481 YYEVELPLAFVLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIYELADEEFNVNSPKQ 540

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG ILF KL  P   KTKTG + T AQ LE +    +PII  I  +RQL+K+ STY + L
Sbjct: 541 LGKILFEKLDLPVIKKTKTG-YSTNAQVLEVLE-DKHPIISKIGYYRQLTKLYSTYVEGL 598

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLIS 747
            N I++   R+H+ ++   T TGRL+S EPNLQNIPIK ++G+++R+ F+       ++S
Sbjct: 599 KNVIDEDG-RIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREVRKVFVPNYENSIILS 657

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAHIA    L   F++  DIH   A+E+F V I++V+  MR +AK +NF 
Sbjct: 658 ADYSQIELRVLAHIADDENLINAFKHHADIHTKTASEVFKVPIDEVTVNMRGNAKAVNFG 717

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           I+YGI  F LA  L+I R EA  YI  YF R+P + +Y+++T +  +++ YV TI  RR 
Sbjct: 718 IVYGIGDFSLAKDLKISRKEAKGYIDTYFERYPNVKKYMDETIDKAKRDMYVTTILNRRR 777

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
              EI +    ++ + ER A+N PIQGSAADI + AM+ V   L++  L +K++LQ+HDE
Sbjct: 778 FIPEIGNKNKIVKALGERLAMNTPIQGSAADIIKMAMVKVFNVLKERDLKSKIILQVHDE 837

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L+  V ++E+     I+  SME      + L VPL+V+I    NW + 
Sbjct: 838 LILNVYKDELEEIKSIVKDSMENV----LPLSVPLEVDINEGENWYDA 881



 Score =  335 bits (859), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 114/298 (38%), Positives = 174/298 (58%), Gaps = 10/298 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K + L ++DG+S + RAFYA P L+  H+G+  NA+ GF NML K+  + + +    +
Sbjct: 7   MPKRDKLVILDGNSLMNRAFYALPPLTN-HEGVHTNAVYGFTNMLLKIKDDIKPD----Y 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               FD  A TFR++ Y DYKA R K+PE L  Q P+V+       I   EI+GFEADD+
Sbjct: 62  IVCTFDKSAPTFRHQAYKDYKAGRKKMPEELREQFPIVKGLLSKLAIEIFEIEGFEADDL 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T +  AE++   V I++ DKD +QL S TT +  T +     E  D + V+ + G+ P
Sbjct: 122 IGTLSKFAEEKDIEVYIVTGDKDALQLASDTTKILFTKRGITEREIYDRQKVVDEMGVTP 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            + + ++ L GD  DNIPG+PGIG KTA  L++EY ++EN+L N   +  KK +EN++E 
Sbjct: 182 TEFIDVKGLMGDPSDNIPGVPGIGEKTALKLIKEYSSVENVLNNIENLSGKKLKENLIEN 241

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLI-LEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +E A  S+KL  +  +VPI I LE +   E+ +   +      L+F  LI+++    +
Sbjct: 242 SEQAIFSKKLATIMRNVPIDIDLEKIKSKEEYDIEAVREIFIKLQFKSLIDKIPKGEN 299


>gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1]
          Length = 833

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 198/528 (37%), Positives = 310/528 (58%), Gaps = 39/528 (7%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           E L+ LK+          G   K   ++  R G+++   +D +L++Y+LD   +  +   
Sbjct: 342 EALADLKEA--------RGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANT--NPEG 391

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +A+++     ++                      A E + +  +L+  L P+L  EKLL 
Sbjct: 392 VARRYGGEFTED----------------------AAERALLSERLFQNLFPRL-SEKLLW 428

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y+ +++P+  V++ ME  G+++D  LL+ +S E+ K +  LE  I+ L+G  FNL+S  
Sbjct: 429 LYQEVERPLSRVLAHMEARGVRLDVPLLEALSFELEKEMERLEGEIFRLAGHPFNLNSRD 488

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  +LF +L      +T+    ++TAQ   +   G +PI++ IL++R+LSK+KSTY D 
Sbjct: 489 QLERVLFDELGLTPVGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDP 548

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IR+AF++     L++
Sbjct: 549 LPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLA 608

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAH++    L +VF    DIH   AA +FG++   V P+MRR AKT+NF 
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+S  RL+ +L I   EA  +I+RYF  FP +  +IE+T    R  GYVET+FGRR 
Sbjct: 669 VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ S   S+R   ER A N P+QG+AAD+ + AM+ +   L+   L   +LLQ+HDE
Sbjct: 729 YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLK--PLGAHLLLQVHDE 786

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LV EVPE+    A  ++   ME A      L VPL+V + V  +W E 
Sbjct: 787 LVLEVPEDRAEEAKALVKEVMENA----YPLDVPLEVEVGVGRDWLEA 830



 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 151/300 (50%), Gaps = 8/300 (2%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +    + LVDG    YR FYA  L      G PV  + GF   L K L+   +       
Sbjct: 9   EPPKRVLLVDGHHLAYRTFYALSL--TTSRGEPVQMVYGFARSLLKALKEDGQ-----AV 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++
Sbjct: 62  VVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVL 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    AE+EG  V I++ D+D  QL+S    +        +  + V +K+G+PPE+ V 
Sbjct: 122 GTLAKKAEREGMEVRILTGDRDFFQLLSEKVSVLLP-DGTLVTPKDVQEKYGVPPERWVD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DNIPG+ GIG KTA  LL E+G++EN+L N  R+K    R  I  + E   
Sbjct: 181 FRALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSVRRKIEAHLEDLH 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++              P
Sbjct: 241 LSLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLHEFGLLGGEKPREEAP 300


>gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6]
 gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6]
          Length = 885

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 182/494 (36%), Positives = 290/494 (58%), Gaps = 12/494 (2%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
             D+ + +Y+LD   S +   ++A ++    L  + +E+L ++K  +   ++ +     +
Sbjct: 399 ISDVAIAAYLLDPLASDYPFDTLAAQYVKDVLILSAEEVLGTKKE-VSWFEVPEETAAMY 457

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A E +   L     L  KL  + +  +Y+ ++ P++  +  ME  GI++  D L+     
Sbjct: 458 AGEIAYTALSCGPGLVEKLEAQGMRKLYDEVEMPLVYTLCHMEEAGIRVLPDELETYGEN 517

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + + +  LE +IY+ +GEKFN++SPKQLG ILF K++ P G KTKTG   +TA D+ +  
Sbjct: 518 LKEGIARLETSIYEAAGEKFNINSPKQLGVILFEKMQLPGGKKTKTGY--STAADVLEKL 575

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P + +ILE+RQL+K+KSTYAD L   I     R+HT +    T TGR++S EPNLQ
Sbjct: 576 AVDVPFVADILEYRQLTKLKSTYADGLAACIAADG-RIHTTFKQTITATGRISSTEPNLQ 634

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP + +LG++IR+ F+       + ADYSQIELR+LA ++    L + + ++ DIH + 
Sbjct: 635 NIPTRIELGRQIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAIT 694

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+++F V + +V+P MRR+AK +NF I+YGIS   L+  L I R EA +YI  Y+  +PG
Sbjct: 695 ASQVFHVPLSEVTPLMRRNAKAVNFGIVYGISAHGLSEDLNISRKEAQEYIDSYYEAYPG 754

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I  Y+E      ++  Y ET +GRR    E++S     R   ER A NAPIQG+AADI +
Sbjct: 755 IRGYLESLVETAKKKEYSETYYGRRRPMPELSSGNFMQRQFGERVAKNAPIQGTAADIIK 814

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AM  V + L++  L +++LLQ+HDEL+ E  E+E+    +I+   M  A     +L V 
Sbjct: 815 IAMNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELERVREILREEMIGAT----DLAVS 870

Query: 962 LKVNIKVSNNWQEE 975
           +++++    NW E 
Sbjct: 871 MEIDMHDGKNWYEA 884



 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 165/301 (54%), Gaps = 11/301 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + ++DG S + RAFY  P L+   +G    A+ GF N+L+++L   + E    +  V F
Sbjct: 4   KILIIDGHSMLNRAFYGLPDLTNA-EGRHTGAVLGFLNILFRVLDEEKPE----YLVVAF 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++++ +YK  R  +PE L  Q+PL++    A G+  I  +G+EADD+I T  
Sbjct: 59  DLSAPTFRHKMFAEYKGTRHPMPEELREQVPLIKEVLTAMGVTIITKEGYEADDLIGTVA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKM 179
              EKEG  VTI+S D+DL+QL +    +     +           + VI+++ + P ++
Sbjct: 119 KRGEKEGMDVTILSGDRDLLQLATDKILVRIPKTKGGQTTVLDYHTKDVIEEYQVTPAQI 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L+AL GD+ DNIPG+PG+G KTA  +L +YG +EN   +   +K KK  E++ ++ + 
Sbjct: 179 IELKALMGDTADNIPGLPGVGPKTATKILLDYGTIENAHDHVEELKPKKAMESMRDHWDL 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  + TD P+ + L    L D   P      + L F KL++R       D   +
Sbjct: 239 AVLSKQLATINTDSPVELELSEARLGDLYTPEAYEIFRQLGFKKLLSRFDGQVTEDRKKL 298

Query: 300 E 300
           E
Sbjct: 299 E 299


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 196/567 (34%), Positives = 318/567 (56%), Gaps = 47/567 (8%)

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           +   +S   +      K      D  VH + D        KE+   L             
Sbjct: 309 VGFVLS-RPEPMWAELKALAACRDGRVHRAADPLAGLKDLKEVRGLL------------- 354

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
              K   ++  R G+ +   +D ML++Y+LD   ++ +   +A+++     ++       
Sbjct: 355 --AKDLAVLASREGLDLVPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTED------- 403

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEI 585
                          A   + +  +L   L  +L   EKLL +Y  ++KP+  V++ ME 
Sbjct: 404 ---------------AAHRALLSERLHQNLLKRLQGEEKLLWLYHEVEKPLSRVLAHMEA 448

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG+++D   L+ +S E+++ +  LEE ++ L+G  FNL+S  QL  +LF +L+ P+  KT
Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLFDELRLPALGKT 508

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +    ++T+  + +     +PI++ IL+ R+L+K+K+TY D LP+ ++ RT R+HT ++ 
Sbjct: 509 QKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTRFNQ 568

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
            +T TGRL+S +PNLQNIP++T LGQ+IRRAF++     L++ DYSQIELR+LAH++   
Sbjct: 569 TATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDE 628

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L +VF+   DIH   A+ +FGV  E V P MRR AKT+NF ++YG+S  RL+ +L IP 
Sbjct: 629 NLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELSIPY 688

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA+ +I+RYF  FP +  +IEKT    R+ GYVET+FGRR +  ++N+   S+R   ER
Sbjct: 689 EEASAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAER 748

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A N P+QG+AAD+ + AM+ +   L   ++  +MLLQ+HDEL+ E P+      + +  
Sbjct: 749 MAFNMPVQGTAADLMKLAMVKLFPRLR--QMGARMLLQVHDELLLEAPQARAEEVAALAK 806

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
            +MEKA      L VPL+V   +  +W
Sbjct: 807 EAMEKA----YPLAVPLEVEAGIGEDW 829



 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 115/344 (33%), Positives = 173/344 (50%), Gaps = 12/344 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + L DG    YR F+A   L+    G PV A+ GF   L K L    KE      
Sbjct: 9   EPKGRVLLADGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKAL----KEDGYKAV 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A++FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD++
Sbjct: 64  FVVFDAKALSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVL 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    AEKEG+ V I++ D+DL QLVS    +        I  E + +K+G+ PE+ V 
Sbjct: 124 ATLAKKAEKEGYEVRILTADRDLYQLVSDCVAVLHPE-GHLITPEWLWEKYGLRPEQWVD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  R
Sbjct: 183 FRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLR 242

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC----DAA 297
           LS  L  +RTD+P+ + L      + +   L +FL+ LEF  L++            +A 
Sbjct: 243 LSLGLSRVRTDLPLEVDLAQ--GREPDREGLRAFLERLEFGSLLHEFGLLEAPAPLEEAP 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
              P    +    ++   +  E+      +  +    +D  + +
Sbjct: 301 WPPPEGAFVGFVLSRPEPMWAELKALAACRDGRVHRAADPLAGL 344


>gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
 gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
          Length = 875

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 196/660 (29%), Positives = 357/660 (54%), Gaps = 18/660 (2%)

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
           +   I   + + LS +   IN++  P+ L    +        +N+   +++   +   ++
Sbjct: 227 KQKVIDGEKIAYLSRELGTINTD-VPKDLMGFVIDDCLIKEADNEHLIEVLTKLEFNSFI 285

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           +KL    S   K   + +D    +    A    ++K   +   +  ++D         T 
Sbjct: 286 KKLPNEESIE-KFEYENLDENVEEI--KAYIKENKKFTFALFNDDYYVDNEPVIFAIYTD 342

Query: 442 KNTLTK--EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDS 498
           K  +T+  +I+   K+ FE++   K+  +IK     L RYGI +   ++D++++ Y+LD 
Sbjct: 343 KVYITRNVDIVKSFKEEFESKDVNKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDP 402

Query: 499 GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
            ++S+ +     K + Y     ++I    +S   I +  + ++  + ++      +L+  
Sbjct: 403 SKTSYSMERSDPKVIGYDFKSLEDITGKGRSKKTILESDEKEIDNYIVKYMMFTNKLYEK 462

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           +  ++  E ++H+Y  ++ P+I V+  ME TG+ + ++ L ++       + S+E+++ +
Sbjct: 463 I-SEIEEEDMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEDSVEE 521

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           L G+K N++S KQL ++LF  L+ P   K KTG   +T Q++ +   G + II  IL +R
Sbjct: 522 LIGKKININSSKQLAEVLFEDLELPVIKKNKTG--PSTDQEVLEALSGRHEIIDYILRYR 579

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            ++K+K+TY D + + I +  + +HT +      TGR++S  PNLQNIPI+T+ G+ IR+
Sbjct: 580 TIAKLKTTYIDGMVDLIKEDGK-IHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRK 638

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           AF+      L+ ADYSQIELR+LA +A    +   F+N  DIHR  A+E+F V+ +KV+ 
Sbjct: 639 AFVPSQGSVLLDADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTS 698

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R +AK +NF I+YGI  + L+  L I R EA +YI+ Y   +  I +Y+E      ++
Sbjct: 699 LQRSNAKAVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKEIKQYMEDIVAIGKE 758

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GYVETI  RR +  E+ S   ++R+  ER A+N PIQGSAADI + AM+  +  L +  
Sbjct: 759 KGYVETIMKRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEN 818

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L  K++LQ+HDEL+ + PE+E     +I+   M  A    ++L+V +K+++  ++ W + 
Sbjct: 819 LKAKLILQVHDELIVDCPEDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADTWYDA 874



 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 105/324 (32%), Positives = 175/324 (54%), Gaps = 16/324 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+    ++DGSS ++R FYA   L+ K DG+  N + GF NM + ++     +     
Sbjct: 1   MSKKA--LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMDKLNPDL---- 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E Y +YK NR + PE L+ Q  +++   QA G+  I+++G+EADDI
Sbjct: 54  VVVCFDRKEPTFRHEKYSEYKGNRQETPEELIVQFDMLKELLQAMGVSYIDLKGYEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
             T    A  + + V +++ DKD +QL+   T +  T +     +  D++ + +++GI P
Sbjct: 114 AGTLAKQASSKNYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDALKEEYGITP 173

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++M+ L+ L GD  DNIPGI G+G KTA   +Q+YG++E +  +   I  KK ++ +++ 
Sbjct: 174 QQMIDLKGLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDG 233

Query: 237 AETARLSRKLVMLRTDVP---ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            + A LSR+L  + TDVP   +   ++  ++++ +   LI  L  LEF   I ++     
Sbjct: 234 EKIAYLSRELGTINTDVPKDLMGFVIDDCLIKEADNEHLIEVLTKLEFNSFIKKLPNEES 293

Query: 294 CDAANIEPVVLDINTTENKGIAIE 317
            +    E   LD N  E K    E
Sbjct: 294 IE--KFEYENLDENVEEIKAYIKE 315


>gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 880

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 222/671 (33%), Positives = 350/671 (52%), Gaps = 29/671 (4%)

Query: 315 AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
           A++    ++  I   + + LS   + IN   +P  + LE +       I   S  +  + 
Sbjct: 228 AMKQSKMKENLINDKEQAFLSKTLATINI-ASPITIGLEDILYSGPQDIKALS--QFYDE 284

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVETIFIDL 431
            D +Q+   L    S       D  +    K    +       +   D     + I I  
Sbjct: 285 MDFKQFKAALGEETS-QEDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAW 343

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIM 490
               +  +T   +L +E L   KK           ++ K  K++L+R+ I +     D  
Sbjct: 344 GNSDTIYATSNVSLLQEAL--FKKALSKP---IKTYDFKRSKVLLNRFNIDLPEPAFDTR 398

Query: 491 LMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           L  Y+L S    + +++IA+ +    L        K  K +IP      ++  EH  +  
Sbjct: 399 LAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRFLEHLAKKV 453

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            V++     +  +L   +   +   +++P+ +V+++MEI GI++ ++ L +++ E  K +
Sbjct: 454 KVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVI 513

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
            +L + IY+L+G++FN++SPKQLG +LF  L  P     KT    +TA D+ +     +P
Sbjct: 514 ETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISP 573

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           ++  ILE+RQ++K++STY   L ++I +  + +HT Y    T TGRL+S +PNLQNIP++
Sbjct: 574 LVTKILEYRQITKLQSTYIIGLQDYILEDGK-IHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 727 TDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
            + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L   F+   DIH   A  +
Sbjct: 633 LEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRV 692

Query: 786 FGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           FG+   E V+P  RR+AK +NF I+YGIS F L+  L IPR  A  YI  YF R+PGI  
Sbjct: 693 FGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E      +  GYVET+F RR    +INS   +IR   ER AIN+PIQGSAADI + AM
Sbjct: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I++ + L+     +KMLLQ+HDE+V EVP EEI    +++  +ME A    I+L VPL  
Sbjct: 813 INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESA----ISLSVPLIA 868

Query: 965 NIKVSNNWQEE 975
           +      W E 
Sbjct: 869 DENAGETWYEA 879



 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/320 (35%), Positives = 162/320 (50%), Gaps = 14/320 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +N L L+DGSS  +RAF+A        + + GL  NAI GF  ML  +L   +    
Sbjct: 1   MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E++ +EA
Sbjct: 57  PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEA 116

Query: 118 DDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T    AE   E F +T++S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N   +KQ K +E
Sbjct: 177 MGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINRVAT 290
           N++   E A LS+ L  +    PITI LE ++     +   L  F   ++F +    +  
Sbjct: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE 296

Query: 291 TYDCDAANIEPVVLDINTTE 310
               +   ++   ++   TE
Sbjct: 297 ETSQEDFEVDFTEVEQLKTE 316


>gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 681

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 236/773 (30%), Positives = 388/773 (50%), Gaps = 108/773 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+  + L+DGSS I+RAF+A P L+   DG+  N + GF  M ++ ++  + +    +
Sbjct: 1   MSKK--VMLIDGSSLIFRAFFALPNLTNA-DGVMTNGVYGFLTMYFRAVEEYKPD----Y 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR++ + DYKANR K P  L  Q  +++    +  +  ++I GFEADDI
Sbjct: 54  ILVAFDKKTKTFRHKEFEDYKANRDKAPSELNYQFGILKDILDSLNVKYLDIDGFEADDI 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           + TY+ IA  EG    II+ DKD  QLV+    +Y T K     E+I  E + + +G+ P
Sbjct: 114 VGTYSKIARDEGLETVIITGDKDYFQLVNDDVIVYLTRKGISQMEEITEEKIKEDYGLSP 173

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++ L GD  DNIPG+ GIG KTA   +++YG++                E + E 
Sbjct: 174 KQLIDVKGLMGDKSDNIPGVDGIGEKTALKYIKKYGSM----------------EALYEN 217

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            +                           D +G +    LK       +++   T   +A
Sbjct: 218 LD---------------------------DISGKKTKENLKNSRQIAFLSKKIGTIVTNA 250

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
               P+  +I+               D  +K     SL ++ SK N  +     FLE+ +
Sbjct: 251 ----PIDYEIS---------------DLRVKNPDMESLKEKFSKYNFNK-----FLEKFE 286

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S+       ++      D    ++ +E      FK I +  +  HSK   IAI +   
Sbjct: 287 DGSKEQREELDFSYSFTDDDF-SVIEDIEKENIFYFKTIFENDNYIHSKAFKIAIKSPSS 345

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K                             ++ +   KK+FE+E+  K+  +IK D ++ 
Sbjct: 346 KTFIYNP----------------------DQKFVENFKKYFEDENINKVSFDIKEDIVLF 383

Query: 477 HRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532
           ++ GI +   ++D MLM Y++D  RSS+D+ + +Q +L Y     +++L   ++      
Sbjct: 384 NKLGIEINFPYDDTMLMHYLIDPSRSSYDLKTFSQAFLKYEVLNEEDLLGKGRNKKSYKD 443

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +S+ ++ ++     N I     +L  KL    +  +Y+  +  +  V+++MEITG   D+
Sbjct: 444 LSEKELGKYLSSIINAIEDSLDILTDKLKELSMYELYKDCEIKLSKVLAEMEITGFICDK 503

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           + L+++  E+S  L  LE+ IY+L+G +FN++SPKQL  ILF  L+ P   KTKTG + T
Sbjct: 504 NELEKIKDEVSLELEDLEKVIYELAGSEFNINSPKQLSIILFEDLELPIIKKTKTG-YST 562

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A+ LE++    +PII  I  +R++ K+KSTY +SL   I++   R+ + +    T TGR
Sbjct: 563 DAKVLEKLR-DKHPIIGKIERYREMYKLKSTYLESLEECIDEDG-RIRSTFKQNVTATGR 620

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           L+S EPNLQN+PI+T+ G+KIR+AF +   K LI ADYSQIELR+LAH+A   
Sbjct: 621 LSSTEPNLQNLPIRTEEGRKIRKAFKADKDKVLIDADYSQIELRVLAHLANDK 673


>gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2]
          Length = 833

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 197/528 (37%), Positives = 310/528 (58%), Gaps = 39/528 (7%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           E L+ LK+          G   K   ++  R G+++   +D +L++Y+LD   +  +   
Sbjct: 342 EALADLKEA--------RGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANT--NPEG 391

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +A+++     ++                      A E + +  +L+  L P+L  EKLL 
Sbjct: 392 VARRYGGEFTED----------------------AAERALLSERLFQNLFPRL-SEKLLW 428

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y+ +++P+  V++ ME  G+++D  LL+ +S E+ K +  LE  ++ L+G  FNL+S  
Sbjct: 429 LYQEVERPLSRVLAHMEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPFNLNSRD 488

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  +LF +L      +T+    ++TAQ   +   G +PI++ IL++R+LSK+KSTY D 
Sbjct: 489 QLERVLFDELGLTPVGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDP 548

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IR+AF++     L++
Sbjct: 549 LPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLA 608

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAH++    L +VF    DIH   AA +FG++   V P+MRR AKT+NF 
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+S  RL+ +L I   EA  +I+RYF  FP +  +IE+T    R  GYVET+FGRR 
Sbjct: 669 VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ S   S+R   ER A N P+QG+AAD+ + AM+ +   L+   L   +LLQ+HDE
Sbjct: 729 YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLK--PLGAHLLLQVHDE 786

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LV EVPE+    A  ++   ME A      L VPL+V + V  +W E 
Sbjct: 787 LVLEVPEDRAEEAKALVKEVMENA----YPLDVPLEVEVGVGRDWLEA 830



 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 151/300 (50%), Gaps = 8/300 (2%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +    + LVDG    YR FYA  L      G PV  + GF   L K L+   +       
Sbjct: 9   EPPKRVLLVDGHHLAYRTFYALSL--TTSRGEPVQMVYGFARSLLKALKEDGQ-----AV 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++
Sbjct: 62  VVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVL 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    AE+EG  V I++ D+D  QL+S    +        +  + V +K+G+PPE+ V 
Sbjct: 122 GTLAKKAEREGMEVRILTGDRDFFQLLSEKVSVLLP-DGTLVTPKDVQEKYGVPPERWVD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DNIPG+ GIG KTA  LL E+G++EN+L N  R+K    R  I  + E   
Sbjct: 181 FRALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLH 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++              P
Sbjct: 241 LSLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLHEFGLLGGEKPREEAP 300


>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
          Length = 554

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 193/533 (36%), Positives = 310/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 52  GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 106

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 107 TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 142

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 143 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 202

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 203 PFNLNSRDQLERVLFDELGLPAIGKTENTGKRSTSAAVLEALREAHPIVEKILQYRELTK 262

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 263 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 322

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 323 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 382

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTIN+ ++YG+S   L+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 383 TAKTINYGVLYGMSAHHLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 442

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 443 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLLPRLEE--MGAR 500

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 501 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 549


>gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457]
 gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457]
          Length = 575

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 213/591 (36%), Positives = 315/591 (53%), Gaps = 41/591 (6%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F       +      +  A S  D+                      +T K  L ++   
Sbjct: 18  FHFELFGENYHTDNLVGFAWSCGDK--------------------LYATDKLELLQD--P 55

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQ 510
             K F E        ++ K  K++L R+G+ ++    DI L  Y+L S    ++IA+IA 
Sbjct: 56  IFKDFLEKTSLR--VYDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIAS 112

Query: 511 KWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +      +      K  K +IP       +  EH      V+++   +L  KL     L
Sbjct: 113 LYGQTYLVDDETFYGKGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQL 168

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +   +++P+  V+++MEI GI + ++ L ++ AE    +  L + IY+L+GE+FN++SP
Sbjct: 169 ELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSP 228

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQLG +LF KL  P     KT    +TA D+ +      PI+K IL++RQ++KI+STY  
Sbjct: 229 KQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVI 288

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKL 745
            L + I    + +HT Y    T TGRL+S++PNLQNIP + + G+ IR+AF+       L
Sbjct: 289 GLQDWILADGK-IHTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVL 347

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTI 804
           +S+DYSQIELR+LAHI+K   L + F+   DIH   A  +FG+   + V+   RR+AK +
Sbjct: 348 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAV 407

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF ++YGIS F L+  L I R EA  YI  YF RFPGI  Y+++     R  GYVET+F 
Sbjct: 408 NFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 467

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR    +INS   +IR   ER AIN+PIQGSAADI + AMI + K+L      TKMLLQ+
Sbjct: 468 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQV 527

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           HDE+V EVP+ E+    +++  +ME+A    I L VPL  +      W E 
Sbjct: 528 HDEIVLEVPKSELVEMKKLVKQTMEEA----IQLSVPLIADENEGATWYEA 574


>gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
 gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
          Length = 890

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 175/494 (35%), Positives = 293/494 (59%), Gaps = 11/494 (2%)

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQE 540
               D  +  Y+L+  + ++D   +A+ +L  T   + +++     +   D + D + Q 
Sbjct: 403 EAMFDAGVAGYLLNPLKDTYDYDDLARDYLDMTVPSKADLMGKTSFTAAFDMMPD-KAQT 461

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                + V  +    L  KL    +  ++  ++ P+I  +  M+  GI + ++ L+    
Sbjct: 462 CVCYMAYVAWKAKPELVKKLEASGMRKLFFDIEMPVIYSLYHMQEEGICVRREELRCYGE 521

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            +   +  LE+ IY  +  +FN++SPKQLG+ILF ++K P G KTKTG   +TA D+ + 
Sbjct: 522 RLKVQIDKLEQEIYQDTETEFNINSPKQLGEILFDRMKMPGGKKTKTGY--STAADVLEK 579

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              + P+++ +L++RQL+K+KSTYAD L   I +   R+H  ++   T TGR++S EPNL
Sbjct: 580 LAPEYPVVRKVLDYRQLTKLKSTYADGLAAFIREDG-RIHGTFNQTITATGRISSTEPNL 638

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QNIP++ +LG++IR+ F+      L+ ADYSQIELR+LAH++    L   +  + DIH +
Sbjct: 639 QNIPVRMELGREIRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAI 698

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+E+F V +E+V+P  RR+AK +NF I+YGIS F L+  L I R EA +YI RYF  +P
Sbjct: 699 TASEVFHVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEALEYINRYFETYP 758

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + ++++      ++ GYVET+FGRR    E+ S     R+  ER A+N+PIQG+AADI 
Sbjct: 759 EVKKFLDHLVELGKEQGYVETMFGRRRPIPELKSANFMQRSFGERVAMNSPIQGTAADII 818

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AMI V + L   KL ++++LQ+HDEL+ E   +E+    +++   M+ A     +L+V
Sbjct: 819 KIAMIRVDQRLRKEKLRSRLVLQVHDELLIETWTDELEKVQKVLEEEMKNAA----HLKV 874

Query: 961 PLKVNIKVSNNWQE 974
            L++++K  ++W E
Sbjct: 875 ELEIDMKTGHSWFE 888



 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 93/328 (28%), Positives = 164/328 (50%), Gaps = 11/328 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG S + RAFY  P L+    GL  NA+ GF +++++++++ +    A H AV F
Sbjct: 3   KLVLIDGHSILNRAFYGVPELTNSK-GLHTNAVYGFLSIMFRVIEDEK----ADHLAVAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR++++  YK  R  +PE L  Q+P+++    + GIP +   G+EADDI+ T  
Sbjct: 58  DLKDPTFRHKMFEAYKGTRKPMPEELHEQVPVIKEVLASMGIPILTRPGYEADDILGTIA 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKM 179
                +G  V+++S D+DL+QL      +                   V  ++ + P + 
Sbjct: 118 KRCAAQGVEVSVVSGDRDLLQLADEKIKIRMPRTSRGTTEIKDYYPADVQAEYHVTPTEF 177

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+P IG KTA  L+  YG++EN   N   +K  + ++ + E+ + 
Sbjct: 178 IDVKALMGDASDNIPGVPSIGEKTATSLITAYGSIENAYANIDEVKPPRAQKALREHYDM 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A++S++L  +  D  I   LE   + +   P     +K LEF  ++ +        +   
Sbjct: 238 AQMSKELATICIDCDIDFTLEDARINNLYTPEAYQHMKQLEFKSILQKFDADVFSASKVE 297

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIK 327
           E        +E + I  E    ++  ++
Sbjct: 298 EHFKTVSELSEAEKIFSEAAGKQEAGMQ 325


>gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440]
 gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440]
          Length = 899

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 188/703 (26%), Positives = 332/703 (47%), Gaps = 29/703 (4%)

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           + A  +      +E VV   +  + K  A   E   D          ++D    ++ E+T
Sbjct: 204 KTAAKWITAYGGVEGVVARADEIKGKAGASLRERLADVIRNHELNCLVADLDLPLSPEET 263

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM------- 399
               +            +   +  + +   + Q++  +E    A F +  + +       
Sbjct: 264 RWAGWDREA---VHQVFDTLEFRILRD--RLYQYLDAVEPEAEAGFDLAGELLVEPGALA 318

Query: 400 -----DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
                 A    P+ +A++     +       T     +   +        L       L 
Sbjct: 319 AWLGAHATPGTPVGLAVTLDTGPNRRHLADVTGMALATAAGAGAWFDPGRLDAADEDALA 378

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513
            +  +    K+ H+ K   L     G +++G   D  + +Y+    + S+D+  +A ++L
Sbjct: 379 GWLADVSRPKVLHDSKPAVLAFAARGCAIQGIARDTQIAAYLARPDQRSYDLTDLALRYL 438

Query: 514 SYTRKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYE 570
               +  L      + +D +  D + +++ +  +   L L   +  +L    E+   +  
Sbjct: 439 HRELRVDLPET-GQLTLDGLGNDGEAEQNLMLRARATLDLADAIDAELSRDGEQSARLMA 497

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P++ V++ ME TGI  D   L ++ A  +  + +  +  Y+  G +FNL SPKQL 
Sbjct: 498 EVELPLMRVLAGMERTGIAADTQYLSELEAHFAAEVKAAAQGAYEAVGREFNLGSPKQLQ 557

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           +ILF +L  P   + KTG                +P++ ++L  R ++K+K+T  D L  
Sbjct: 558 EILFGELGLPKTKRIKTGYTTDADALQWLYGQNPHPVLGHLLRHRDVAKLKTT-VDGLLK 616

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISAD 749
            ++    R+HT ++     TGRL+S EPNLQNIPI+T+ G++IRRAF+       L++AD
Sbjct: 617 SVSDDG-RIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGTGYECLLTAD 675

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE+RI+AH++    L   F + LD H   A+ +F V +E V+   RR  K +N+ + 
Sbjct: 676 YSQIEMRIMAHLSADEALIDAFNSGLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGLA 735

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+S F L+ QL +   EA   ++ YF  F G+ +Y+++     R++GY E++ GRR + 
Sbjct: 736 YGLSAFGLSQQLGVTAEEARGLMETYFAGFGGVRDYLQEVVARARRDGYTESVLGRRRYL 795

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            ++ S     R + ER A+NAPIQGSAADI + AM++V  ++ +  L ++MLLQ+HDELV
Sbjct: 796 PDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELV 855

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           FEV   E      ++   M  A      L VPL+V++    +W
Sbjct: 856 FEVAPGEREALEALVRREMGGA----FPLSVPLEVSVGDGRDW 894



 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 106/331 (32%), Positives = 157/331 (47%), Gaps = 10/331 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L LVDG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ +     +H A
Sbjct: 5   KPRLLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQ----PTHIA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD   V+FR E Y  YKA R + P     Q+ LV+    A  IPA+E+ G+EADD+IA
Sbjct: 61  VAFDVSRVSFRTEKYAAYKAGRSETPTDFKGQVSLVKEILAALRIPAVEMAGYEADDVIA 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEK 178
           T T  A  +  AV I + D+D  QLV     +    K      ++D   V  K+G+PP+ 
Sbjct: 121 TLTRQARDQDMAVLITTGDRDAFQLVDDDVTVLYPRKGVSDLARMDPAAVTAKYGVPPQH 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DN+PG+PG+G KTAA  +  YG +E ++  A  IK  K   ++ E   
Sbjct: 181 YRDLAALVGETSDNLPGVPGVGPKTAAKWITAYGGVEGVVARADEIKG-KAGASLRERLA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               + +L  L  D+ + +  E       +   +      LEF  L +R+    D     
Sbjct: 240 DVIRNHELNCLVADLDLPLSPEETRWAGWDREAVHQVFDTLEFRILRDRLYQYLDAVEPE 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
            E           +  A+   +    T  T 
Sbjct: 300 AEAGFDLAGELLVEPGALAAWLGAHATPGTP 330


>gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I
 gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 877

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/662 (34%), Positives = 359/662 (54%), Gaps = 26/662 (3%)

Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW 380
            +D  I   + + LS Q + IN++   +    + L K          Y    +     Q+
Sbjct: 234 MKDNLIADKEMAFLSQQLATINTKAPLEIGLEDTLLKEKNVAELGQFY----DEMGFSQF 289

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
             KL   G       T + +    + +    S      D  F +ET+    + H  Q   
Sbjct: 290 KSKLLADGGGEVTDETVS-EEIKFEIVTDKSSVASVNADDFFYLETLGE--NYHREQIVA 346

Query: 441 GKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDS 498
                +++I +S          F +  ++ K ++++L    I +     D ML  Y++ S
Sbjct: 347 FAWGNSEKIYVSKNLDLLTEMKFPENTYDFKKNRVLLSHLNIELPLVKFDAMLAKYLI-S 405

Query: 499 GRSSHDIASIAQ----KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
               + I++IA+      L+   +   K  K ++P D+I    + +H      V+ +   
Sbjct: 406 TTEDNKISTIARLFDVGHLATDEEIFGKGTKLALPDDEI----LFDHLARKIRVLARAKE 461

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            +  +LI  +  H+   ++ P+ +V+++MEITGI + Q+ L+++ AE  + L SL   IY
Sbjct: 462 KMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAENEEKLASLTREIY 521

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           DL+GE+FN++SPKQLG ILF KL+ P G KTKTG   +TA D+ +     +P++  ILE+
Sbjct: 522 DLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAALSPVVAKILEY 579

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQ++K++STY   L   I     ++HT Y    T TGRL+S++PNLQNIP++ + G+KIR
Sbjct: 580 RQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIR 638

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKV 793
           +AF+      L+S+DYSQIELR+LAHI+    L   F++  DIH   A  +FG+   E V
Sbjct: 639 KAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAEDV 698

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +   RR+AK +NF ++YGIS F LA  L I R +A +YI+ YF R+PGI  Y+E      
Sbjct: 699 TANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREA 758

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           R  G+VET+  RR    +IN+   ++R   ER AIN+PIQGSAADI + AMI++ K+L +
Sbjct: 759 RDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTE 818

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +  +K+LLQ+HDE++ +VP EE+     ++  +ME+A    I L VPLKV+      W 
Sbjct: 819 RQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEA----IELAVPLKVDDNTGKTWY 874

Query: 974 EE 975
           E 
Sbjct: 875 EA 876



 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 187/378 (49%), Gaps = 14/378 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        +  +GL  NAI  F  ML  L++  +    
Sbjct: 1   MEDKNRLLLIDGSSVAFRAFFALYNQLDRFKAPNGLHTNAIFAFHTMLSSLMERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  +EA
Sbjct: 57  PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+  N   +K  K ++
Sbjct: 177 MGLTPSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKD 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   E A LS++L  + T  P+ I LE  +L++ N   L  F   + F++  +++   
Sbjct: 237 NLIADKEMAFLSQQLATINTKAPLEIGLEDTLLKEKNVAELGQFYDEMGFSQFKSKLLAD 296

Query: 292 YDCDAAN-IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
              +  +      +      +K        D    ++T   +   +Q        + +  
Sbjct: 297 GGGEVTDETVSEEIKFEIVTDKSSVASVNADDFFYLETLGENYHREQIVAFAWGNSEKIY 356

Query: 351 FLERLQKLSQYPINNDSY 368
             + L  L++     ++Y
Sbjct: 357 VSKNLDLLTEMKFPENTY 374


>gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI
           polymerase 1
 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis]
          Length = 833

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 197/528 (37%), Positives = 310/528 (58%), Gaps = 39/528 (7%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           E L+ LK+          G   K   ++  R G+++   +D +L++Y+LD   +  +   
Sbjct: 342 EALADLKEA--------RGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTHPE--G 391

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +A+++     ++                      A E + +  +L+  L P+L  EKLL 
Sbjct: 392 VARRYGGEFTED----------------------AAERALLSERLFQNLFPRL-SEKLLW 428

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y+ +++P+  V++ ME  G+++D  LL+ +S E+ K +  LE  ++ L+G  FNL+S  
Sbjct: 429 LYQEVERPLSRVLAHMEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPFNLNSRD 488

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  +LF +L      +T+    ++TAQ   +   G +PI++ IL++R+LSK+KSTY D 
Sbjct: 489 QLERVLFDELGLTPVGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDP 548

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IR+AF++     L++
Sbjct: 549 LPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLA 608

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAH++    L +VF    DIH   AA +FG++   V P+MRR AKT+NF 
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+S  RL+ +L I   EA  +I+RYF  FP +  +IE+T    R  GYVET+FGRR 
Sbjct: 669 VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ S   S+R   ER A N P+QG+AAD+ + AM+ +   L+   L   +LLQ+HDE
Sbjct: 729 YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLK--PLGAHLLLQVHDE 786

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LV EVPE+    A  ++   ME A      L VPL+V + V  +W E 
Sbjct: 787 LVLEVPEDRAEEAKALVKEVMENA----YPLDVPLEVEVGVGRDWLEA 830



 Score =  306 bits (783), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 151/300 (50%), Gaps = 8/300 (2%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +    + LVDG    YR FYA  L      G PV  + GF   L K L+   +       
Sbjct: 9   EPPKRVLLVDGHHLAYRTFYALSL--TTSRGEPVQMVYGFARSLLKALKEDGQ-----AV 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++
Sbjct: 62  VVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVL 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    AE+EG  V I++ D+D  QL+S    +        +  + V +K+G+PPE+ V 
Sbjct: 122 GTLAKKAEREGMEVRILTGDRDFFQLLSEKVSVLLP-DGTLVTPKDVQEKYGVPPERWVD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DNIPG+ GIG KTA  LL E+G++EN+L N  R+K    R  I  + E   
Sbjct: 181 FRALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLH 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++              P
Sbjct: 241 LSLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLHEFGLLGGEKPREEAP 300


>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
          Length = 833

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 196/528 (37%), Positives = 309/528 (58%), Gaps = 39/528 (7%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           E L+ LK+          G   K   ++  R G+++   +D +L++Y+LD   +  +   
Sbjct: 342 EALADLKEA--------RGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANT--NPEG 391

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +A+++     ++                      A E + +  +L+  L P+L  EKLL 
Sbjct: 392 VARRYGGEFTED----------------------AAERALLSERLFQNLFPRL-SEKLLW 428

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y+ +++P+  V++ ME  G+++D  LL+ +S E+ K +  LE  ++ L+G  FNL+S  
Sbjct: 429 LYQEVERPLSRVLAHMEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPFNLNSRD 488

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  +LF +L      +T+    ++TAQ   +   G +PI++ IL++R+LSK+KSTY D 
Sbjct: 489 QLERVLFDELGLTPVGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDP 548

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IR+AF++     L++
Sbjct: 549 LPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLA 608

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAH++    L +VF    DIH   AA +FG++   V P+MRR AKT+NF 
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+S  RL+ +L I   EA  +I+RYF  FP +  +IE+T    R  GYVET+FGRR 
Sbjct: 669 VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ S   S+R   ER A N P+QG+AAD+ + AM+ +   L+   L   +LLQ+HDE
Sbjct: 729 YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLK--PLGAHLLLQVHDE 786

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LV EVPE+    A  ++   ME        L VPL+V + V  +W E 
Sbjct: 787 LVLEVPEDRAEEAKALVKEVMEN----TYPLDVPLEVEVGVGRDWLEA 830



 Score =  307 bits (786), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 152/300 (50%), Gaps = 8/300 (2%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +    + LVDG    YR FYA  L      G PV  + GF   L K L+   +       
Sbjct: 9   EPPKRVLLVDGHHLAYRTFYALSL--TTSRGEPVQMVYGFARSLLKALKEDGQ-----AV 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++
Sbjct: 62  VVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVL 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    AE+EG  V I++ D+D  QL+S    +        +  + V +K+G+PPE+ V 
Sbjct: 122 GTLAKKAEREGMEVRILTGDRDFFQLLSEKVSVLLP-DGTLVTPKDVQEKYGVPPERWVD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DNIPG+ GIG KTA  LL E+G++EN+L N  R+K    R  I  + E  R
Sbjct: 181 FRALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSVRRKIEAHLEDLR 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++              P
Sbjct: 241 LSLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLHEFGLLGGEKPREEAP 300


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
           polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 196/567 (34%), Positives = 318/567 (56%), Gaps = 47/567 (8%)

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           +   +S   +      K      D  VH + D        KE+   L             
Sbjct: 309 VGFVLS-RPEPMWAELKALAACRDGRVHRAADPLAGLKDLKEVRGLL------------- 354

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
              K   ++  R G+ +   +D ML++Y+LD   ++ +   +A+++     ++       
Sbjct: 355 --AKDLAVLASREGLDLVPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTED------- 403

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEI 585
                          A   + +  +L   L  +L   EKLL +Y  ++KP+  V++ ME 
Sbjct: 404 ---------------AAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLSRVLAHMEA 448

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG+++D   L+ +S E+++ +  LEE ++ L+G  FNL+S  QL  +LF +L+ P+  KT
Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLFDELRLPALGKT 508

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +    ++T+  + +     +PI++ IL+ R+L+K+K+TY D LP+ ++ RT R+HT ++ 
Sbjct: 509 QKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTRFNQ 568

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
            +T TGRL+S +PNLQNIP++T LGQ+IRRAF++     L++ DYSQIELR+LAH++   
Sbjct: 569 TATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDE 628

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L +VF+   DIH   A+ +FGV  E V P MRR AKT+NF ++YG+S  RL+ +L IP 
Sbjct: 629 NLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPY 688

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I+RYF  FP +  +IEKT    R+ GYVET+FGRR +  ++N+   S+R   ER
Sbjct: 689 EEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAER 748

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A N P+QG+AAD+ + AM+ +   L +  +  +MLLQ+HDEL+ E P+      + +  
Sbjct: 749 MAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARMLLQVHDELLLEAPQARAEEVAALAK 806

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
            +MEKA      L VPL+V + +  +W
Sbjct: 807 EAMEKA----YPLAVPLEVEVGMGEDW 829



 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 116/344 (33%), Positives = 174/344 (50%), Gaps = 12/344 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L    KE      
Sbjct: 9   EPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKAL----KEDGYKAV 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD++
Sbjct: 64  FVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVL 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    AEKEG+ V I++ D+DL QLVS    +        I  E + +K+G+ PE+ V 
Sbjct: 124 ATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPE-GHLITPEWLWEKYGLRPEQWVD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  R
Sbjct: 183 FRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLR 242

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC----DAA 297
           LS +L  +RTD+P+ + L      + +   L +FL+ LEF  L++            +A 
Sbjct: 243 LSLELSRVRTDLPLEVDLAQ--GREPDREGLRAFLERLEFGSLLHEFGLLEAPAPLEEAP 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
              P    +    ++   +  E+      +  +    +D  + +
Sbjct: 301 WPPPEGAFVGFVLSRPEPMWAELKALAACRDGRVHRAADPLAGL 344


>gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
           polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
           Orientation For The Structure-Specific Nuclease Domain
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 330 GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 384

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 385 TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 420

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 421 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 480

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 481 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 540

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 541 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 600

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 601 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 660

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 661 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 720

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 721 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 778

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 779 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 827



 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 158/300 (52%), Gaps = 10/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 9   EPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDG-----DAV 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD++
Sbjct: 63  IVVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVL 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+    AEKEG+ V I++ DKDL QL+S    +        I    + +K+G+ P++   
Sbjct: 123 ASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPE-GYLITPAWLWEKYGLRPDQWAD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    RE IL + +  +
Sbjct: 182 YRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMDDLK 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +        + +  RL +FL+ LEF  L++         A    P
Sbjct: 241 LSWDLAKVRTDLPLEVDFAK--RREPDRERLRAFLERLEFGSLLHEFGLLESPKALEEAP 298


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 327 GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 381

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 382 TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 417

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 418 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 477

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 478 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 537

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 538 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 597

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 598 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 657

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 658 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 717

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 718 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 775

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 776 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 824



 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 158/300 (52%), Gaps = 10/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 6   EPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDG-----DAV 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD++
Sbjct: 60  IVVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVL 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+    AEKEG+ V I++ DKDL QL+S    +        I    + +K+G+ P++   
Sbjct: 120 ASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPE-GYLITPAWLWEKYGLRPDQWAD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    RE IL + +  +
Sbjct: 179 YRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMDDLK 237

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +        + +  RL +FL+ LEF  L++         A    P
Sbjct: 238 LSWDLAKVRTDLPLEVDFAK--RREPDRERLRAFLERLEFGSLLHEFGLLESPKALEEAP 295


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 330 GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 384

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 385 TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 420

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 421 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 480

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 481 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 540

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 541 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 600

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 601 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 660

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 661 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 720

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 721 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 778

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 779 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 827



 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 157/300 (52%), Gaps = 10/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 9   EPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDG-----DAV 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD++
Sbjct: 63  IVVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVL 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+    AEKEG+ V I++ DKDL QL+S             I    + +K+G+ P++   
Sbjct: 123 ASLAKKAEKEGYEVRILTADKDLYQLLSDRIHALHPE-GYLITPAWLWEKYGLRPDQWAD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    RE IL + +  +
Sbjct: 182 YRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMDDLK 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +        + +  RL +FL+ LEF  L++         A    P
Sbjct: 241 LSWDLAKVRTDLPLEVDFAK--RREPDRERLRAFLERLEFGSLLHEFGLLESPKALEEAP 298


>gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
 gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
          Length = 598

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 170/493 (34%), Positives = 289/493 (58%), Gaps = 9/493 (1%)

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS-RKSSIPID-KISDSQVQEHA 542
              D  +  Y+L+  + ++D   +A+ +L  T         K S+ +  +  + +     
Sbjct: 112 PLFDAGVAGYLLNPLKDTYDYDDLARDYLGLTVPSRAGLIGKQSVKMALETDEKKAFTCV 171

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
                +       L  +L   ++  ++  ++ P+I  +  ME  GI+ ++  LK+    +
Sbjct: 172 CYMGYIAFMSADRLTEELKRTEMYSLFTDIEMPLIYSLFHMEQVGIKAERVRLKEYGDRL 231

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              +  LE+ IY+ +GE FN++SPKQLG++LF  +K P+G KTK+G   +TA D+     
Sbjct: 232 KVQIAVLEQKIYEETGETFNINSPKQLGEVLFDHMKLPNGKKTKSGY--STAADVLDKLA 289

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D P+++ IL++RQL+K+ STYA+ L  +I    +R+H  ++   T TGR++S EPNLQN
Sbjct: 290 PDYPVVQMILDYRQLTKLNSTYAEGLAVYIGPD-ERIHGTFNQTITATGRISSTEPNLQN 348

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++ +LG++IR+ F+       I ADYSQIELR+LAH++    L   + ++ DIH + A
Sbjct: 349 IPVRMELGREIRKIFVPEDGYVFIDADYSQIELRVLAHMSGDERLIGAYRHAEDIHAITA 408

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+F   +++V+P  RR+AK +NF I+YGIS F L+  L I R EA +YI +YF  +PG+
Sbjct: 409 SEVFHTPLDEVTPLQRRNAKAVNFGIVYGISSFGLSEGLSISRKEATEYINKYFETYPGV 468

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            E++++     ++ GY  ++FGRR    E+ S     R+  ER A+N+PIQG+AADI + 
Sbjct: 469 KEFLDRLVADAKETGYAVSMFGRRRPVPELKSANFMQRSFGERVAMNSPIQGTAADIMKI 528

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI V ++L+   L ++++LQ+HDEL+ E  ++E+     ++V  M+ A     +L V L
Sbjct: 529 AMIRVDRALKAKGLKSRIVLQVHDELLIETRKDEVEAVKALLVDEMKHAA----DLSVSL 584

Query: 963 KVNIKVSNNWQEE 975
           +V   V ++W + 
Sbjct: 585 EVEANVGDSWFDA 597


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 331 GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 385

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 386 TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 421

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 422 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 481

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 482 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 541

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 542 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 601

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 602 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 661

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 662 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 721

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 722 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 779

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 780 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 828



 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 158/300 (52%), Gaps = 10/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 10  EPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDG-----DAV 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD++
Sbjct: 64  IVVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVL 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+    AEKEG+ V I++ DKDL QL+S    +        I    + +K+G+ P++   
Sbjct: 124 ASLAKKAEKEGYEVHILTADKDLYQLLSDRIHVLHPE-GYLITPAWLWEKYGLRPDQWAD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    RE IL + +  +
Sbjct: 183 YRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMDDLK 241

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +        + +  RL +FL+ LEF  L++         A    P
Sbjct: 242 LSWDLAKVRTDLPLEVDFAK--RREPDRERLRAFLERLEFGSLLHEFGLLESPKALEEAP 299


>gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2]
          Length = 833

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 196/528 (37%), Positives = 309/528 (58%), Gaps = 39/528 (7%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           E L+ LK+          G   K   ++  R G+++   +D +L++Y+LD   +  +   
Sbjct: 342 EALADLKEA--------RGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTHPE--G 391

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +A+++     ++                      A E + +  +L+  L P+L  EKLL 
Sbjct: 392 VARRYGGEFTED----------------------AAERALLSERLFQTLFPRL-SEKLLW 428

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y+ +++P+  V++ ME  G+++D  LL+ +S E+ K +  LE  ++ L+G  FNL+S  
Sbjct: 429 LYQEVERPLSRVLAHMEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPFNLNSRD 488

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL  +LF +L      +T+    ++TAQ   +   G +PI++ IL++R+LSK+KSTY D 
Sbjct: 489 QLERVLFDELGLTPVGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDP 548

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
           LP  ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IR+AF++     L++
Sbjct: 549 LPRLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEEGWLLLA 608

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIELR+LAH++    L +VF    DIH   AA +FG++   V  +MRR AKT+NF 
Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQKMRRAAKTVNFG 668

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+S  RL+ +L I   EA  +I+RYF  FP +  +IE+T    R  GYVET+FGRR 
Sbjct: 669 VLYGMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRR 728

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ S   S+R   ER A N P+QG+AAD+ + AM+ +   L+   L   +LLQ+HDE
Sbjct: 729 YVPDLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLK--PLGAHLLLQVHDE 786

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LV EVPE+    A  ++   ME A      L VPL+V + V  +W E 
Sbjct: 787 LVLEVPEDRAEEAKALVKEVMENA----YPLDVPLEVEVGVGRDWLEA 830



 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 151/300 (50%), Gaps = 8/300 (2%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +    + LVDG    YR FYA  L      G PV  + GF   L K L+   +       
Sbjct: 9   EPPKRVLLVDGHHLAYRTFYALSL--TTSRGEPVQMVYGFARSLLKALKEDGQ-----AV 61

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL LV+      G+  +E  G+EADD++
Sbjct: 62  VVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVL 121

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T    AE+EG  V I++ D+D  QL+S    +        +  + V +K+G+PPE+ V 
Sbjct: 122 GTLAKKAEREGMEVRILTGDRDFFQLLSEKVSVLLP-DGTLVTPKDVQEKYGVPPERWVD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DNIPG+ GIG KTA  LL E+G +EN+L N  R+K    R  I  + E  R
Sbjct: 181 FRALTGDRSDNIPGVAGIGEKTALRLLAEWGGVENLLKNLDRVKPDSLRRKIEAHLEDLR 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +  + L     +   L +FL+ LEF  L++              P
Sbjct: 241 LSLDLARIRTDLPLEVDFKALRRRAPDLEGLRAFLEELEFGSLLHEFGLLGGEKPREEAP 300


>gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
           polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 195/567 (34%), Positives = 317/567 (55%), Gaps = 47/567 (8%)

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           +   +S   +      K      D  VH + D        KE+   L             
Sbjct: 309 VGFVLS-RPEPMWAELKALAACRDGRVHRAADPLAGLKDLKEVRGLL------------- 354

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
              K   ++  R G+ +   +D ML++Y+LD   ++ +   +A+++     ++       
Sbjct: 355 --AKDLAVLASREGLDLVPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTED------- 403

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEI 585
                          A   + +  +L   L  +L   EKLL +Y  ++KP+  V++ ME 
Sbjct: 404 ---------------AAHRALLSERLHRNLLKRLQGEEKLLWLYHEVEKPLSRVLAHMEA 448

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG+++D   L+ +S E+++ +  LEE ++ L+G  FNL+S  QL  +LF +L+ P+  KT
Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLFDELRLPALGKT 508

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +    ++T+  + +     +PI++ IL+ R+L+K+K+TY D LP+ ++  T R+HT ++ 
Sbjct: 509 QKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPNTGRLHTRFNQ 568

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
            +T TGRL+S +PNLQNIP++T LGQ+IRRAF++     L++ DYSQIELR+LAH++   
Sbjct: 569 TATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDE 628

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L +VF+   DIH   A+ +FGV  E V P MRR AKT+NF ++YG+S  RL+ +L IP 
Sbjct: 629 NLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPY 688

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I+RYF  FP +  +IEKT    R+ GYVET+FGRR +  ++N+   S+R   ER
Sbjct: 689 EEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAER 748

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A N P+QG+AAD+ + AM+ +   L +  +  +MLLQ+HDEL+ E P+      + +  
Sbjct: 749 MAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARMLLQVHDELLLEAPQAGAEEVAALAK 806

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
            +MEKA      L VPL+V + +  +W
Sbjct: 807 EAMEKA----YPLAVPLEVEVGMGEDW 829



 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/344 (33%), Positives = 173/344 (50%), Gaps = 12/344 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L    KE      
Sbjct: 9   EPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKAL----KEDGYKAV 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD++
Sbjct: 64  FVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVL 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT     EKEG+ V I++ D+DL QLVS    +        I  E + +K+G+ PE+ V 
Sbjct: 124 ATLAKNPEKEGYEVRILTADRDLDQLVSDRVAVLHPE-GHLITPEWLWQKYGLKPEQWVD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  R
Sbjct: 183 FRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLR 242

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC----DAA 297
           LS +L  +RTD+P+ + L      + +   L +FL+ LEF  L++            +A 
Sbjct: 243 LSLELSRVRTDLPLEVDLAQ--GREPDREGLRAFLERLEFGSLLHEFGLLEAPAPLEEAP 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
              P    +    ++   +  E+      +  +    +D  + +
Sbjct: 301 WPPPEGAFVGFVLSRPEPMWAELKALAACRDGRVHRAADPLAGL 344


>gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
 gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
          Length = 512

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 202/520 (38%), Positives = 313/520 (60%), Gaps = 16/520 (3%)

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT--- 516
           +  K   ++K + + L R GI++    +DIML SY+ DS  ++ D+  +A  +  +    
Sbjct: 1   NIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQS 60

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            + I    K       +    +  H     +V+ +L   + P+L   + LH+Y+ ++ P+
Sbjct: 61  DEIIYGKGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPI 117

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
             ++++MEI GI++    L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF K
Sbjct: 118 AVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEK 177

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
           LK     KTKTG   +T+ D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    
Sbjct: 178 LKLTPAKKTKTGY--STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADG 235

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIEL 755
           + +HT +    T TGRL+S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+EL
Sbjct: 236 K-IHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVEL 294

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISP 814
           R+LAH++    + + F+   DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS 
Sbjct: 295 RVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISD 354

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           + LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI  RR    +I++
Sbjct: 355 YGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHN 414

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
              +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP 
Sbjct: 415 KNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPS 474

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           EE+     ++   M++A      L VPL  +    +NW E
Sbjct: 475 EELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 510


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 196/567 (34%), Positives = 317/567 (55%), Gaps = 47/567 (8%)

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           +   +S   +      K      D  VH + D        KE+   L             
Sbjct: 309 VGFVLS-RPEPMWAELKALAACRDGRVHRAADPLAGLKDLKEVRGLL------------- 354

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
              K   ++  R G+ +   +D ML++Y+LD   ++ +   +A+++     ++       
Sbjct: 355 --AKDLAVLASREGLDLVPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTED------- 403

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEI 585
                          A   + +  +L   L  +L   EKLL +Y  ++KP+  V++ ME 
Sbjct: 404 ---------------AAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLSRVLAHMEA 448

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG++ D   L+ +S E+++ +  LEE ++ L+G  FNL+S  QL  +LF +L+ P+  KT
Sbjct: 449 TGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLFDELRLPALGKT 508

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +    ++T+  + +     +PI++ IL+ R+L+K+K+TY D LP+ ++ RT R+HT ++ 
Sbjct: 509 QKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTRFNQ 568

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
            +T TGRL+S +PNLQNIP++T LGQ+IRRAF++     L++ DYSQIELR+LAH++   
Sbjct: 569 TATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDE 628

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L +VF+   DIH   A+ +FGV  E V P MRR AKT+NF ++YG+S  RL+ +L IP 
Sbjct: 629 NLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPY 688

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I+RYF  FP +  +IEKT    R+ GYVET+FGRR +  ++N+   S+R   ER
Sbjct: 689 EEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAER 748

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A N P+QG+AAD+ + AM+ +   L +  +  +MLLQ+HDEL+ E P+      + +  
Sbjct: 749 MAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARMLLQVHDELLLEAPQARAEEVAALAK 806

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
            +MEKA      L VPL+V + +  +W
Sbjct: 807 EAMEKA----YPLAVPLEVEVGMGEDW 829



 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 117/344 (34%), Positives = 175/344 (50%), Gaps = 12/344 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L    KE      
Sbjct: 9   EPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKAL----KEDGYKAV 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD++
Sbjct: 64  FVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVL 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    AEKEG+ V I++ D+DL QLVS    +    K   I  E + +K+G+ PE+ V 
Sbjct: 124 ATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHP-KGHLITPEWLWEKYGLRPEQWVD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  R
Sbjct: 183 FRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLR 242

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC----DAA 297
           LS +L  +RTD+P+ + L      + +   L +FL+ LEF  L++            +A 
Sbjct: 243 LSLELSRVRTDLPLEVDLAQ--GREPDREGLRAFLERLEFGSLLHEFGLLEAPAPLEEAP 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
              P    +    ++   +  E+      +  +    +D  + +
Sbjct: 301 WPPPEGAFVGFVLSRPEPMWAELKALAACRDGRVHRAADPLAGL 344


>gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 877

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/662 (34%), Positives = 358/662 (54%), Gaps = 26/662 (3%)

Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW 380
            +D  I   + + LS Q + IN++   +    + L K          Y    +     Q+
Sbjct: 234 MKDNLIADKEMAFLSQQLATINTKAPLEIGLEDTLLKEKNVAELGQFY----DEMGFSQF 289

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
             KL   G       T + +    + +    S      D  F +ET+    + H  Q   
Sbjct: 290 KSKLLADGGGEVTDETVS-EEIKFEIVTDKSSVASVNADDFFYLETLGE--NYHREQIVA 346

Query: 441 GKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDS 498
                +++I +S          F +  ++ K ++++L    I +     D ML  Y++ S
Sbjct: 347 FAWGNSEKIYVSKNLDLLTEMKFPENTYDFKKNRVLLSHLNIELPLVKFDAMLAKYLI-S 405

Query: 499 GRSSHDIASIAQ----KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
               + I++IA+      L+   +   K  K ++P D+I    + +H      V+ +   
Sbjct: 406 TTEDNKISTIARLFDVGHLATDEEIFGKGTKLALPDDEI----LFDHLARKIRVLARAKE 461

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            +  +LI  +  H+   ++ P+ +V+++MEITGI + Q+ L+++ AE  + L SL   IY
Sbjct: 462 KMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAENEEKLASLTREIY 521

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           DL+GE+FN++SPKQLG ILF KL+ P G KTKTG   +TA D+ +     +P++  ILE+
Sbjct: 522 DLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAALSPVVAKILEY 579

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQ++K +STY   L   I     ++HT Y    T TGRL+S++PNLQNIP++ + G+KIR
Sbjct: 580 RQINKEQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIR 638

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKV 793
           +AF+      L+S+DYSQIELR+LAHI+    L   F++  DIH   A  +FG+   E V
Sbjct: 639 KAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAEDV 698

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +   RR+AK +NF ++YGIS F LA  L I R +A +YI+ YF R+PGI  Y+E      
Sbjct: 699 TANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREA 758

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           R  G+VET+  RR    +IN+   ++R   ER AIN+PIQGSAADI + AMI++ K+L +
Sbjct: 759 RDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTE 818

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +  +K+LLQ+HDE++ +VP EE+     ++  +ME+A    I L VPLKV+      W 
Sbjct: 819 RQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEA----IELAVPLKVDDNTGKTWY 874

Query: 974 EE 975
           E 
Sbjct: 875 EA 876



 Score =  321 bits (822), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 187/378 (49%), Gaps = 14/378 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        +  +GL  NAI  F  ML  L++  +    
Sbjct: 1   MEDKNRLLLIDGSSVAFRAFFALYNQLDRFKAPNGLHTNAIFAFHTMLSSLMERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  +EA
Sbjct: 57  PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+  N   +K  K ++
Sbjct: 177 MGLTPSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKD 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   E A LS++L  + T  P+ I LE  +L++ N   L  F   + F++  +++   
Sbjct: 237 NLIADKEMAFLSQQLATINTKAPLEIGLEDTLLKEKNVAELGQFYDEMGFSQFKSKLLAD 296

Query: 292 YDCDAAN-IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
              +  +      +      +K        D    ++T   +   +Q        + +  
Sbjct: 297 GGGEVTDETVSEEIKFEIVTDKSSVASVNADDFFYLETLGENYHREQIVAFAWGNSEKIY 356

Query: 351 FLERLQKLSQYPINNDSY 368
             + L  L++     ++Y
Sbjct: 357 VSKNLDLLTEMKFPENTY 374


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 196/567 (34%), Positives = 317/567 (55%), Gaps = 47/567 (8%)

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           +   +S   +      K      D  VH + D        KE+   L             
Sbjct: 309 VGFVLS-RPEPMWAELKALAACRDGRVHRAADPLAGLKDLKEVRGLL------------- 354

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
              K   ++  R G+ +   +D ML++Y+LD   ++ +   +A+++     ++       
Sbjct: 355 --AKDLAVLASREGLDLVPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTED------- 403

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEI 585
                          A   + +  +L   L  +L   EKLL +Y  ++KP+  V++ ME 
Sbjct: 404 ---------------AAHRALLSERLHRNLLKRLEGEEKLLWLYHEVEKPLSRVLAHMEA 448

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TG++ D   L+ +S E+++ +  LEE ++ L+G  FNL+S  QL  +LF +L+ P+  KT
Sbjct: 449 TGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLFDELRLPALGKT 508

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +    ++T+  + +     +PI++ IL+ R+L+K+K+TY D LP+ ++ RT R+HT ++ 
Sbjct: 509 QKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTRFNQ 568

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
            +T TGRL+S +PNLQNIP++T LGQ+IRRAF++     L++ DYSQIELR+LAH++   
Sbjct: 569 TATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDE 628

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L +VF+   DIH   A+ +FGV  E V P MRR AKT+NF ++YG+S  RL+ +L IP 
Sbjct: 629 NLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPY 688

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  +I+RYF  FP +  +IEKT    R+ GYVET+FGRR +  ++N+   S+R   ER
Sbjct: 689 EEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAER 748

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A N P+QG+AAD+ + AM+ +   L +  +  +MLLQ+HDEL+ E P+      + +  
Sbjct: 749 MAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARMLLQVHDELLLEAPQARAEEVAALAK 806

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972
            +MEKA      L VPL+V + +  +W
Sbjct: 807 EAMEKA----YPLAVPLEVEVGMGEDW 829



 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 116/344 (33%), Positives = 174/344 (50%), Gaps = 12/344 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L    KE      
Sbjct: 9   EPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKAL----KEDGYKAV 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD++
Sbjct: 64  FVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVL 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    AEKEG+ V I++ D+DL QLVS    +        I  E + +K+G+ PE+ V 
Sbjct: 124 ATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHPE-GHLITPEWLWEKYGLRPEQWVD 182

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  R
Sbjct: 183 FRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDLR 242

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC----DAA 297
           LS +L  +RTD+P+ + L      + +   L +FL+ LEF  L++            +A 
Sbjct: 243 LSLELSRVRTDLPLEVDLAQ--GREPDREGLRAFLERLEFGSLLHEFGLLEAPAPLEEAP 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
              P    +    ++   +  E+      +  +    +D  + +
Sbjct: 301 WPPPEGAFVGFVLSRPEPMWAELKALAACRDGRVHRAADPLAGL 344


>gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
 gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
          Length = 886

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/535 (37%), Positives = 309/535 (57%), Gaps = 19/535 (3%)

Query: 450 LSYLKK--FFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506
           L  LK   F E        ++ K  K++L   GI +     D  L  Y+L S    ++++
Sbjct: 361 LDLLKDRLFVEALSKPIKTYDFKRSKVLLSHLGIELPTADFDSRLAKYLL-STVEDNELS 419

Query: 507 SIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +IA  +    L+   +   K  K ++P D++    + +H      V+++   +L+ KL  
Sbjct: 420 TIASLYGQTPLAKDVEVYGKGAKKAVPEDQV----LFQHLATKLQVLVETEPVLKEKLAE 475

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
                +   ++ P+ +V+++MEITGI++++  LK +  E    L +L + IYD++G++FN
Sbjct: 476 HGQSDLLFDMELPLANVLAKMEITGIKVNRQTLKDMEVENQVTLDALTQEIYDMAGQEFN 535

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG ILF ++  P+    KT    +TA D+ +      PI+  ILE+RQ++K++S
Sbjct: 536 INSPKQLGTILFEEMGLPTSMTKKTKTGYSTAVDVLERLAPHAPIVAKILEYRQIAKLQS 595

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-P 741
           TY   L + I    + +HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF     
Sbjct: 596 TYVVGLQDFILDDGK-IHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFTPEWE 654

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRH 800
              L+S+DYSQIELR+LAHI+    L   F+N  DIH   A  +F +   E V+P  RR+
Sbjct: 655 DSVLLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRRN 714

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +NF ++YGIS + L+  L I R  A +YI  YF RFPGI +Y+E+     +  GYVE
Sbjct: 715 AKAVNFGVVYGISDYGLSQNLGISRKAAKNYIATYFERFPGIKDYMERVVREAKDKGYVE 774

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T+F RR    +INS   +IRN  ER AIN+PIQGSAADI + AMI++ ++LE     TKM
Sbjct: 775 TLFKRRRTLPDINSRNFNIRNFAERTAINSPIQGSAADILKIAMINLDQALEAGSFKTKM 834

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LLQ+HDE+V EVP  E++   +++  +ME A    I L VPL  +      W E 
Sbjct: 835 LLQVHDEIVLEVPNAELSAIKKLVKKTMESA----IVLAVPLLADENSGKTWYEA 885



 Score =  330 bits (846), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 109/312 (34%), Positives = 158/312 (50%), Gaps = 11/312 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  +++       
Sbjct: 10  MANKNKLLLIDGSSIAFRAFFALYNQIDRFKNPVGLHTNAIYGFHLMLDHMMKRIE---- 65

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   +++ +EA
Sbjct: 66  PTHVLVAFDAGKTTFRTEMYADYKGGRDKTPDEFREQFPYIREMLDHLGIAYYDLENYEA 125

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T   +AE   F VTI+S DKDL+QL    T +  + K     E+   +H+++K G
Sbjct: 126 DDIIGTLDKLAENGEFDVTIVSGDKDLIQLADDNTVVEISRKGVAEFEEYTPQHLMEKMG 185

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K +EN+
Sbjct: 186 ITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEAIYDHIDSFKPSKMKENL 245

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +   E A LS+ L  +    PI I L+  + +      L  F   ++F +    +    +
Sbjct: 246 INDREQAFLSKTLATINIQSPIEIGLDDTLYKGPRLDELAKFYDEMDFKQFKAGLGLKEE 305

Query: 294 CDAANIEPVVLD 305
            +   I+  V+D
Sbjct: 306 AEQVEIKYQVVD 317


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/564 (35%), Positives = 319/564 (56%), Gaps = 39/564 (6%)

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDST---GKNTLTKEILSYLKKFFENEHFLKIGHNI 469
               +      V +    +    +  +    G+    ++ L  L+   E    L      
Sbjct: 297 WPPPEGAFVGYVLSRPEPMWAELNALAAAWEGRVYRAEDPLEALRGLGEVRGLL-----A 351

Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
           K   ++  R GI++   +D ML++Y+LD   ++ +   +A+++     +E          
Sbjct: 352 KDLAVLALREGIALAPGDDPMLLAYLLDPSNTAPE--GVARRYGGEWTEE---------- 399

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
                       A E + +  +L+  L  +L   E+LL +YE ++KP+  V++ ME TG+
Sbjct: 400 ------------AGERALLSERLYAALLERLKGEERLLWLYEEVEKPLSRVLAHMEATGV 447

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D   LK +S E+   L  LEE ++ L+G  FNL+S  QL  +LF +L  P+  KT+  
Sbjct: 448 RLDVAYLKALSLEVEAELRRLEEEVHRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKT 507

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
             ++T+  + +     +PI+  IL++R+LSK+K TY D LP  ++ +T R+HT ++  +T
Sbjct: 508 GKRSTSAAVLEALREAHPIVDRILQYRELSKLKGTYIDPLPALVHPKTNRLHTRFNQTAT 567

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T LGQ+IRRAF++    KL+  DYSQIELR+LAH++    L 
Sbjct: 568 ATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWKLVVLDYSQIELRVLAHLSGDENLI 627

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           +VF+   DIH   A+ +FGV  E V   MRR AKTINF ++YG+S  RL+ +L IP  EA
Sbjct: 628 RVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAKTINFGVLYGMSAHRLSGELAIPYEEA 687

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I+RYF  +P +  +IEKT    R+ GYVET+FGRR +  ++ S   SIR   ER A 
Sbjct: 688 VAFIERYFQSYPKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAF 747

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N P+QG+AAD+ + AM+ +   L++  L  +MLLQ+HDELV E P+E+    +Q    +M
Sbjct: 748 NMPVQGTAADLMKLAMVKLFPRLQE--LGARMLLQVHDELVLEAPKEQAEEVAQEAKRTM 805

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           E+       L+VPL+V + +  +W
Sbjct: 806 EEV----WPLKVPLEVEVGIGEDW 825



 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 109/300 (36%), Positives = 161/300 (53%), Gaps = 9/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 6   EPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALREDG-----DVV 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR++ Y  YKA R   PE    QL L++      G+  +E+ GFEADD++
Sbjct: 60  IVVFDAKAPSFRHQTYEAYKAGRAPTPEDFPRQLALIKEMVDLLGLERLEVPGFEADDVL 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    AEKEG+ V I++ D+DL QL+S    +        I  E + +K+G+ P + V 
Sbjct: 120 ATLAKKAEKEGYEVRILTADRDLYQLLSERISILHPE-GYLITPEWLWEKYGLKPSQWVD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DNIPG+ GIG KTAA L++E+G+LEN+L +  ++K    RE IL + E  +
Sbjct: 179 YRALAGDPSDNIPGVKGIGEKTAAKLIREWGSLENLLKHLEQVKPASVREKILSHMEDLK 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS +L  +RTD+P+ +        + +   L +FL+ LEF  L++         AA   P
Sbjct: 239 LSLELSRVRTDLPLQVDFA--RRREPDREGLKAFLERLEFGSLLHEFGLLESPVAAEEAP 296


>gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 462

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 199/466 (42%), Positives = 294/466 (63%), Gaps = 8/466 (1%)

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERL 572
           +    +++      IP   +   +  ++A E++++ L+L  +L PKL+ E  L  VY  +
Sbjct: 2   TMKYVDLVGKGAKQIPFSHVGVQEATQYAAEDADITLRLHCVLAPKLLAEPILERVYREI 61

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P++ V+ ++E  G+QID + L + SA++S+ ++  ++   DL+G  FNL SPKQL  +
Sbjct: 62  EMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVL 121

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF +LK P   KT  GQ   T ++  +     + + + ILE+R L+K+++TY + LP  I
Sbjct: 122 LFDELKLPVVVKTPKGQPS-TNEEALEAIVDQHALPRVILEYRSLAKLRNTYTEKLPEMI 180

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +  T RVHT Y  A   TGRL+S +PNLQNIPI+TD G++IRRAF++P  +KLI+ DYSQ
Sbjct: 181 HPHTGRVHTNYHQAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQ 240

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH++    L   FE+ +D+H  +AAE+FG  I++V+P  RR AK INF +IYG+
Sbjct: 241 IELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGM 300

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F LA QL I R EA DYI  YF RF G+ +++E T+   R  GYVET+FGRR++ + I
Sbjct: 301 SAFGLARQLGISRGEAQDYIALYFDRFSGVRDFMENTRQQARDRGYVETVFGRRLYLNSI 360

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL--EDHKLATKMLLQIHDELVF 930
            S   + R   ERAAINAP+QG+AADI +RAM++V   L    H+    M+LQ+HDELVF
Sbjct: 361 ASGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVF 420

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E  E  + T    +   M  A      LRVPL V++ V ++W E +
Sbjct: 421 EADEGFVPTLVHEVSARMAAAA----QLRVPLVVDVGVGHHWDEAH 462


>gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
 gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
          Length = 878

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/783 (28%), Positives = 379/783 (48%), Gaps = 45/783 (5%)

Query: 212 GNLENILINASR-----IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           G L+ +  N        +   K    + +   T  +S+K V    +      +E + +  
Sbjct: 121 GTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLMEKIGITP 180

Query: 267 CNGPRLISFLKALE-----FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
                L + +          TK+  +       +  ++E V  +I+        ++    
Sbjct: 181 KQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGVYENID-------GMKKSKM 233

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381
           ++  I   + + LS   + IN    P  + L+ +        + D      +    +Q+ 
Sbjct: 234 KENLINDKEQAFLSKTLATINI-SAPITIGLDDIDYQ---GPDLDKLVPFYDEMGFKQFK 289

Query: 382 QKLETIGS-ASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVETIFIDLSVHTSQDS 439
             L        F +    +D+  +   A       +   D       I        +  +
Sbjct: 290 DNLGAPKKQEKFDVSYTEVDSLSADMFADDQFFYFEILGDNYHVENIIGFAWGNDKAIYA 349

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDS 498
           +    L K+ L   K            ++ K  K++L  +G+ +     D  L  Y+L S
Sbjct: 350 STNLDLLKDDL--FKAALAKP---IKTYDFKRSKVLLSHFGVDLPAPAFDSRLAKYLL-S 403

Query: 499 GRSSHDIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
               +++++IA+ +  Y          K  K ++P   +    +  +      V+     
Sbjct: 404 TVDDNELSTIARLYTDYVLDSDEAVYGKGVKRAVPEKSV----LLSYLARKIVVLNHSEK 459

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           ++  KL   +   +   +++P+ +V+++MEI GI + +  L+++ A     +  L + IY
Sbjct: 460 VMLDKLTEHQQASLLFDMEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIY 519

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           DL+G +FN++SPKQLG++LF K++ P+    KT    +TA D+ +     +PI+  ILE+
Sbjct: 520 DLAGMEFNINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEY 579

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQ++K++STY   L + I  +  ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR
Sbjct: 580 RQIAKLQSTYIVGLQDFI-LQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIR 638

Query: 735 RAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EK 792
           +AF+     + L+S+DYSQIELR+LAHI+    L   F    DIH   A  +FG+   E 
Sbjct: 639 KAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTED 698

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           V+P  RR+AK +NF I+YGIS + LA  L IPR  A  YI+ YF R+PGI  Y+E+    
Sbjct: 699 VTPNDRRNAKAVNFGIVYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRD 758

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
            +  GYVET+F RR    +INS   +IR   ER AIN+PIQGSAADI + AMI++ K+L 
Sbjct: 759 AKDKGYVETLFHRRRELPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALV 818

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           D +  TKMLLQ+HDE++ +VP++E+     ++  +ME A    I+L VPL  +      W
Sbjct: 819 DGQFKTKMLLQVHDEIILQVPKDELEAVKTLVKETMESA----IDLSVPLIADENAGQTW 874

Query: 973 QEE 975
            E 
Sbjct: 875 YEA 877



 Score =  330 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 167/313 (53%), Gaps = 12/313 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +  L L+DGSS  YRAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MENKKKLLLIDGSSVAYRAFFALYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R    A GI   +++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLSALGITFYDLENYEA 116

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+    ++++K 
Sbjct: 117 DDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLMEKI 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           GI P++ + L+AL GD  DNIPG+  IG KT   LL EYG+LE +  N   +K+ K +EN
Sbjct: 177 GITPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGVYENIDGMKKSKMKEN 236

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   E A LS+ L  +    PITI L+ +  +  +  +L+ F   + F +  + +    
Sbjct: 237 LINDKEQAFLSKTLATINISAPITIGLDDIDYQGPDLDKLVPFYDEMGFKQFKDNLGAPK 296

Query: 293 DCDAANIEPVVLD 305
             +  ++    +D
Sbjct: 297 KQEKFDVSYTEVD 309


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 196/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+    ++ L+ L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 329 GRVHRAEDPLAGLRDLKEVRGLL-----AKDLAVLALREGLDLPPSDDPMLLAYLLDPSN 383

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     ++                      A + + +  +L   L  +L
Sbjct: 384 TTPE--GVARRYGGEWTED----------------------AAQRALLAERLQQNLLERL 419

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              EKLL +Y  ++KP+  V++ ME TG+++D   LK +S E+   L  LEE +Y L+G 
Sbjct: 420 EGEEKLLWLYREVEKPLSRVLAHMEATGVRLDVAYLKALSLEVEAELKRLEEEVYRLAGH 479

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +LK P+  KT+    ++T+  + +     +PI++ IL+ R+LSK
Sbjct: 480 PFNLNSRDQLERVLFDELKLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELSK 539

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP  ++ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IR+AF++
Sbjct: 540 LKSTYIDPLPGLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVA 599

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF    DIH   A+ +FGV +E V P+MRR
Sbjct: 600 EEGFLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRR 659

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKT+NF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    RQ GYV
Sbjct: 660 AAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEGGRQRGYV 719

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++N+   S+R   ER A N P+QG+AAD+ + AM+ +   L++     +
Sbjct: 720 ETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLKETG--AR 777

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDEL+ E P++     + +    ME        L VPL+V + +  +W
Sbjct: 778 MLLQVHDELLLEAPKDRAEAVAALAKEVMEGV----YPLAVPLEVEVGIGEDW 826



 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 157/300 (52%), Gaps = 8/300 (2%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L    KE      
Sbjct: 6   EPKGRILLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKAL----KEDGYKAV 60

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G   +E+ G+EADD++
Sbjct: 61  FVVFDAKAPSFRHEAYEGYKAGRAPTPEDFPRQLALIKELVDLLGFARLEVPGYEADDVL 120

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+    AE EG+ V I++ D+DL QLVS    +        I  E + +K+G+ PE+ V 
Sbjct: 121 ASLAKKAEGEGYEVRILTADRDLYQLVSDRIAVLHPE-GHLITPEWLWEKYGLRPEQWVD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DN+PG+ GIG KTA  LL+E+G+LEN+L N  R+K +  RE I  + E  R
Sbjct: 180 FRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPESVREKIRAHLEDLR 239

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS +L  ++ D+P+ +        + +   L +FL+ LEF  L++              P
Sbjct: 240 LSLELSRVQADLPLEVDFAQ--GREPDREGLRAFLERLEFGSLLHEFGLLEAPAPLEEAP 297


>gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
 gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
          Length = 877

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/662 (34%), Positives = 361/662 (54%), Gaps = 26/662 (3%)

Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW 380
            +D  I   + + LS Q + IN+ +TP ++ LE      +       +    +     Q+
Sbjct: 234 MKDNLIADKEMAFLSQQLATINT-KTPLEIGLEDTLLKEKNVAELGQF---YDEMGFSQF 289

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
             KL T G       T + +    + +    S      D  F +ET+    + H  Q   
Sbjct: 290 KSKLLTDGGGEVTDETVS-EEIKFEIVTDKSSVASVNADDFFYLETLGE--NYHREQIVA 346

Query: 441 GKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDS 498
                 ++I +S          F +  ++ K ++++L    I +     D ML  Y++ S
Sbjct: 347 FAWGNAEKIYVSKNLDLLTEMKFPENTYDFKKNRVLLSHLNIELPLVKFDAMLAKYLI-S 405

Query: 499 GRSSHDIASIAQ----KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
               + I++IA+      L+   +   K  K ++P D+I    + +H      V+ +   
Sbjct: 406 TTEDNKISTIARLFDVGHLATDEEIFGKGTKLALPDDEI----LFDHLARKIRVLARAKE 461

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            +  +LI  +  H+   ++ P+ +V+++MEITGI + Q+ L+++ AE  + L  L   IY
Sbjct: 462 KMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAENEEKLALLTREIY 521

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           +L+GE+FN++SPKQLG ILF KL+ P G KTKTG   +TA D+ +     +P++  ILE+
Sbjct: 522 ELAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAALSPVVAKILEY 579

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           RQ++K++STY   L   I     ++HT Y    T TGRL+S++PNLQNIP++ + G+KIR
Sbjct: 580 RQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIR 638

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKV 793
           +AF+      L+S+DYSQIELR+LAHI+    L   F++  DIH   +  +FG+   E V
Sbjct: 639 KAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGIEKAEDV 698

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +   RR+AK +NF ++YGIS F LA  L I R +A +YI+ YF R+PGI  Y+E      
Sbjct: 699 TANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREA 758

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           R  G+VET+  RR    +IN+   ++R   ER AIN+PIQGSAADI + AMI++ K+L +
Sbjct: 759 RDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTE 818

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +  +K+LLQ+HDE++ +VP EE+     ++  +ME+A    I L VPLKV+      W 
Sbjct: 819 RQSKSKLLLQVHDEIILDVPLEELEEIQVLVKETMEEA----IELAVPLKVDENTGKTWY 874

Query: 974 EE 975
           E 
Sbjct: 875 EA 876



 Score =  321 bits (823), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 187/378 (49%), Gaps = 14/378 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        +  +GL  NAI  F  ML  L++  +    
Sbjct: 1   MEDKNRLLLIDGSSVAFRAFFALYNQLDRFKAPNGLHTNAIFAFHTMLSSLMERIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  + FD    TFR E++ DYK  R K P+    QLP ++   +  GI   E+  +EA
Sbjct: 57  PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AE     F VTI++ DKD++QLV   T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ P + + L+AL GDS DN PG+  +G KT   LLQE+G+LEN+  N   +K  K ++
Sbjct: 177 MGLTPSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKD 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   E A LS++L  + T  P+ I LE  +L++ N   L  F   + F++  +++ T 
Sbjct: 237 NLIADKEMAFLSQQLATINTKTPLEIGLEDTLLKEKNVAELGQFYDEMGFSQFKSKLLTD 296

Query: 292 YDCDAAN-IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
              +  +      +      +K        D    ++T   +   +Q          +  
Sbjct: 297 GGGEVTDETVSEEIKFEIVTDKSSVASVNADDFFYLETLGENYHREQIVAFAWGNAEKIY 356

Query: 351 FLERLQKLSQYPINNDSY 368
             + L  L++     ++Y
Sbjct: 357 VSKNLDLLTEMKFPENTY 374


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/564 (35%), Positives = 319/564 (56%), Gaps = 39/564 (6%)

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDST---GKNTLTKEILSYLKKFFENEHFLKIGHNI 469
               +      V +    +    +  +    G+    ++ L  L+   E    L      
Sbjct: 297 WPPPEGAFVGYVLSRPEPMWAELNALAAAWEGRVYRAEDPLEALRGLGEVRGLL-----A 351

Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
           K   ++  R GI++   +D ML++Y+LD   ++ +   +A+++     +E          
Sbjct: 352 KDLAVLALREGIALAPGDDPMLLAYLLDPSNTAPE--GVARRYGGEWTEE---------- 399

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588
                       A E + +  +L+  L  +L   E+LL +YE ++KP+  V++ ME TG+
Sbjct: 400 ------------AGERALLSERLYAALLERLKGEERLLWLYEEVEKPLSRVLAHMEATGV 447

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D   LK +S E+   L  LEE ++ L+G  FNL+S  QL  +LF +L  P+  KT+  
Sbjct: 448 RLDVAYLKALSLEVEAELRRLEEEVHRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKT 507

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
             ++T+  + +     +PI+  IL++R+LSK+K TY D LP  ++ +T R+HT ++  +T
Sbjct: 508 GKRSTSAAVLEALREAHPIVDRILQYRELSKLKGTYIDPLPALVHPKTNRLHTRFNQTAT 567

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGRL+S +PNLQNIP++T LGQ+IRRAF++    +L+  DYSQIELR+LAH++    L 
Sbjct: 568 ATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEEGWRLVVLDYSQIELRVLAHLSGDENLI 627

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           +VF+   DIH   A+ +FGV  E V   MRR AKTINF ++YG+S  RL+ +L IP  EA
Sbjct: 628 RVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAKTINFGVLYGMSAHRLSGELAIPYEEA 687

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             +I+RYF  +P +  +IEKT    R+ GYVET+FGRR +  ++ S   SIR   ER A 
Sbjct: 688 VAFIERYFQSYPKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAF 747

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N P+QG+AAD+ + AM+ +   L++  L  +MLLQ+HDELV E P+E+    +Q    +M
Sbjct: 748 NMPVQGTAADLMKLAMVKLFPRLQE--LGARMLLQVHDELVLEAPKEQAEEVAQEAKRTM 805

Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972
           E+       L+VPL+V + +  +W
Sbjct: 806 EEV----WPLKVPLEVEVGIGEDW 825



 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 160/300 (53%), Gaps = 9/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 6   EPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALREDG-----DVV 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR++ Y  YKA R   PE    QL L++      G+  +E+ GFEADD++
Sbjct: 60  IVVFDAKAPSFRHQTYEAYKAGRAPTPEDFPRQLALIKEMVDLLGLERLEVPGFEADDVL 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    AEKEG+ V I++ D+DL QL+S    +        I  E + +K+G+ P + V 
Sbjct: 120 ATLAKKAEKEGYEVRILTADRDLYQLLSERISILHPE-GYLITPEWLWEKYGLKPSQWVD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DNIPG+ GIG KTAA L++E+G+LEN+L +  ++K    RE IL + E  +
Sbjct: 179 YRALAGDPSDNIPGVKGIGEKTAAKLIREWGSLENLLKHLEQVKPASVREKILSHMEDLK 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS +L  + TD+P+ +        + +   L +FL+ LEF  L++         AA   P
Sbjct: 239 LSLELSRVHTDLPLQVDFA--RRREPDREGLKAFLERLEFGSLLHEFGLLESPVAAEEAP 296


>gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 868

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 192/491 (39%), Positives = 302/491 (61%), Gaps = 19/491 (3%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D+ L +Y+L+  + S+    +A+ ++      +L  +K              E  + +
Sbjct: 397 IHDLSLGAYLLNPLKDSYAYDDLARDYMDL----VLPGKK--------ELQNTAEEGLYS 444

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           + V  Q    +  +L   +   +Y  +++P++ V+ +ME  GI +D++ L     E+ KN
Sbjct: 445 AFVSWQAKNRIFQELKDTEQWELYRDVEEPLVPVLYRMEKAGILVDKEALLSYGEELKKN 504

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           +  L+E IY ++GE+FN++SP+QLG ILF K++ P G KTKTG   +TA D+ +    D 
Sbjct: 505 IAMLQEEIYAMAGEEFNINSPQQLGGILFEKMQLPGGKKTKTGY--STAVDVLEKLQEDY 562

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           PI+  ILE+R  SK+ STYA+ L N++ +  QR+H  +    T TGRL+S EPNLQNIPI
Sbjct: 563 PIVGKILEYRTYSKLNSTYAEGLSNYVGED-QRIHGSFQQMVTATGRLSSTEPNLQNIPI 621

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +T++G+  R  FI       + ADYSQ+ELR+LA ++K   L + +    DIHR+ A+E+
Sbjct: 622 RTEMGRVFRSVFIPKEGSVFLDADYSQVELRLLASLSKDEKLIEAYRKDADIHRVTASEV 681

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F V +E+V+P++RR+AK +NF I+YGIS F L+  L I R EA +YI+RYF  +P + EY
Sbjct: 682 FHVPLEEVTPELRRNAKAVNFGIVYGISAFGLSEGLSISRQEAKEYIERYFTSYPKVKEY 741

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           ++    F R++ +V+T+FGRR    EI++     R+ +ER A+NAPIQG+AADI ++AM+
Sbjct: 742 LDGEVAFAREHSFVKTLFGRRRPLPEIHASNFMRRSFSERVAMNAPIQGTAADIIKKAMV 801

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V + L +    ++++LQIHDEL+ EV +EE+ T   I+V +ME      ++L VPL V 
Sbjct: 802 IVDQKLSEKNCQSRIVLQIHDELLLEVVKEELETVKDILVSAMEHV----VSLPVPLIVE 857

Query: 966 IKVSNNWQEEN 976
             V NNW E +
Sbjct: 858 ATVGNNWDEAH 868



 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 106/335 (31%), Positives = 172/335 (51%), Gaps = 17/335 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   + L+DG S + RAFY  P L+ K +G+P N I GF N+L+K ++    E    + A
Sbjct: 2   KREKILLIDGHSILSRAFYGVPFLNNK-EGIPTNGIYGFLNILFKEIEIEETE----YVA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD P  TFR++++P+YK  R  +PE L  Q+PL++   +   +P + ++GFEADDI+ 
Sbjct: 57  VAFDVPKPTFRHKLFPEYKGTRKGMPEELKEQVPLLQELLRKMHMPLLMMEGFEADDILG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEK----IDIEHVIKKWGIPP 176
           T     + EG  V ++S D+DL+QL      +    T K E        + V ++WG+ P
Sbjct: 117 TVAKQMQAEGKEVVVVSGDRDLLQLSDEHIKISIPKTSKGETKVYSYYPKDVEEEWGVSP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR-----E 231
            + + L+AL GDS DNIPG+PG+G KTA  ++Q+Y ++E    +A   + K  R     +
Sbjct: 177 IEFIDLKALMGDSSDNIPGVPGMGEKTATWIIQKYKSIEEAYAHAEDSEFKVPRKPNAGK 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           ++ E  E A+LS++L  +   VPI++       E+         ++  EF  L +R    
Sbjct: 237 DLKENFELAKLSKELATINIHVPISLNFSDCKWENYANSESKELIRKWEFRSLYSRFEEA 296

Query: 292 YDCDAANIE-PVVLDINTTENKGIAIETEIDRDTT 325
                  +  P   D+       IA +    + + 
Sbjct: 297 ESTAEKKLSLPAWKDVEDPYLAKIAFKDAKKQKSA 331


>gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
 gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 908

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 193/652 (29%), Positives = 332/652 (50%), Gaps = 18/652 (2%)

Query: 333 SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF 392
            L+D    +   QTP  L ++   +   + + +D   +++  +  +  V  +E      F
Sbjct: 260 ELTDLIRDVPLPQTPDTLRMQPWNRDQIHRLFDDLEFRVLRDRLFETLVA-VEPEVEHGF 318

Query: 393 KIITDTMDA--FHSKPIAIAIST-----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            +    ++     +     ++ +     +           T    ++          +TL
Sbjct: 319 DVRGRALEPGELAAWLSEHSLGSRFGVAVVGTHKAYDADATALAIVAADGDGRYIDTSTL 378

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHD 504
           T E  + L  +  +    K  H  K     L   G ++RG   D  L +Y++  G+ S  
Sbjct: 379 TPEDEAALASWLADPGPPKALHEAKLAMHDLAGRGWTLRGVTSDTALAAYLVRPGQRSFT 438

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKIS--DSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +  +A ++L    +     ++    +D     D Q  +  I  +  +L L   L  +L  
Sbjct: 439 LDDLAVRYLHRELRAETPEQQQLSLLDDSDGVDEQAVQTVILRACAVLDLADALDQELAR 498

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
              L +  R++ P+   +++ME  GI +D  +L+Q+ +E +  +    E  Y + G++ N
Sbjct: 499 IDSLSLLSRMELPVQRTLAEMEHAGIAVDLGMLEQLQSEFADQIRDAAEAAYSVIGKQIN 558

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           L SPKQL  +LF +L+ P   KTKTG                +P ++++L  R  +++K 
Sbjct: 559 LGSPKQLQAVLFDELEMPKTKKTKTGYTTDADALQSLFEKTGHPFLQHLLAHRDATRLKV 618

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           T  D L N +     R+HT ++     TGRL+S EPNLQNIPI+T+ G++IR AF+    
Sbjct: 619 T-VDGLLNSVASDG-RIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGEG 676

Query: 743 K-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             +L++ADYSQIE+RI+AH+++   L + F    D+H  VA+  F V I++V+P++RR  
Sbjct: 677 YAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPIDEVTPELRRRV 736

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K +++ + YG+S + LA QL+I   EA   +++YF RF G+ +Y+    +  R++GY  T
Sbjct: 737 KAMSYGLAYGLSAYGLAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARKDGYTST 796

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           + GRR +  E++S    +R   ERAA+NAPIQGSAADI + AMI+V ++++D  L +++L
Sbjct: 797 VLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKDAGLRSRIL 856

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           LQ+HDEL+FEV E E     Q++   M  A      L VPL+V++    +W 
Sbjct: 857 LQVHDELLFEVSEGEQGELEQLVREHMGNA----YPLDVPLEVSVGYGRSWD 904



 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 110/383 (28%), Positives = 176/383 (45%), Gaps = 16/383 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++ +     +H A 
Sbjct: 20  PTLMLLDGNSLAFRAFYALPAENFKTQSGLTTNAVYGFTAMLINLLRDEQ----PTHIAA 75

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR + YP+YK  R   P+    Q+ + +    A GI  +   GFEADDIIAT
Sbjct: 76  AFDVSRQTFRKDKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEPGFEADDIIAT 135

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               AE+EG+ V +++ D+D +QLVS    +    K      +   + V++K+G+ P++ 
Sbjct: 136 LATQAEQEGYRVLVVTGDRDSLQLVSDQVTVLYPRKGVSELTRFTPDAVVEKYGLTPQQY 195

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
               AL GD  DN+PGIPG+G KTA   + EYG+L+ ++ N   +K  K  + +     +
Sbjct: 196 PDFAALRGDPSDNLPGIPGVGEKTATKWIVEYGSLQALVDNVDAVKG-KVGDALRANLSS 254

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             L+R+L  L  DVP+    + L ++  N  ++      LEF  L +R+  T       +
Sbjct: 255 VILNRELTDLIRDVPLPQTPDTLRMQPWNRDQIHRLFDDLEFRVLRDRLFETLVAVEPEV 314

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
           E      +  + +G A+E         + S  S         +         L  +    
Sbjct: 315 E------HGFDVRGRALEPGELAAWLSEHSLGSRFGVAVVGTHKAYDADATALAIVAADG 368

Query: 360 QYPINNDSYTKIVNTKDIQQWVQ 382
                + S     +   +  W+ 
Sbjct: 369 DGRYIDTSTLTPEDEAALASWLA 391


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 193/533 (36%), Positives = 308/533 (57%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 330 GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 384

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 385 TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWGRL 420

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 421 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 480

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 481 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 540

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL   +PNLQNIP++T LGQ+IRR FI+
Sbjct: 541 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLCCCDPNLQNIPVRTPLGQRIRRGFIA 600

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 601 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 660

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I+RYF  FP +  +IEKT    R+ GYV
Sbjct: 661 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYV 720

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 721 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 778

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 779 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 827



 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 158/300 (52%), Gaps = 10/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 9   EPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDG-----DAV 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD++
Sbjct: 63  IVVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVL 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+    AEKEG+ V I++ DKDL QL+S    +        I    + +K+G+ P++   
Sbjct: 123 ASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPE-GYLITPAWLWEKYGLRPDQWAD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    RE IL + +  +
Sbjct: 182 YRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMDDLK 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +        + +  RL +FL+ LEF  L++         A    P
Sbjct: 241 LSWDLAKVRTDLPLEVDFAK--RREPDRERLRAFLERLEFGSLLHEFGLLESPKALEEAP 298


>gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
          Length = 879

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/673 (33%), Positives = 352/673 (52%), Gaps = 34/673 (5%)

Query: 315 AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
           + +    ++  I   + + LS   + IN+E        + +       +  + Y    + 
Sbjct: 228 SFKASKMKENLINDKEQAFLSKTLATINTESPITIGLEDLVYHGPNVQVLMEFY----DE 283

Query: 375 KDIQQWVQKLE-----TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            D +Q    LE          SF+++T            I  +  D       K      
Sbjct: 284 MDFKQLKAGLETEVPQEKAEISFEVVTS--------EDQIVFTDQDLFYFEILKDNYHRE 335

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFED 488
           D+      +S          L     F +        ++ K  K++L   GI + +   D
Sbjct: 336 DIHAFAWGNSDYIYVSKDSALLTGPSFTKRLAEPIATYDFKRSKVLLSHLGIDLPQANYD 395

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIE 544
             L +Y+L S    +++A+IA+    L+    E++  K  K + P     D  + +H   
Sbjct: 396 ARLANYLL-SNIEDNELATIARLHTNLNMEADEVVYGKGVKRAFP----EDEALFDHLAR 450

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
              V++    ++  KL V K   +Y  ++ P+ +V+++MEI GI +++  L++++ +   
Sbjct: 451 KIQVLVDSKAVILDKLAVNKEEDLYFDIELPLANVLAKMEIAGITVNKTALQEMAEQNKA 510

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            + SL E IY+++GE+FN++SPKQLG ILF K++ P     KT    +TA D+ +     
Sbjct: 511 VIESLTEEIYEMAGEEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPI 570

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            PI+  IL++RQ+SK++STY   L ++I    + +HT Y    T TGRL+S +PNLQNIP
Sbjct: 571 APIVAKILDYRQISKLQSTYVIGLQDYIMSDGK-IHTRYIQDLTQTGRLSSSDPNLQNIP 629

Query: 725 IKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           ++ + G+ IR+AF+       L+S+DYSQIELR+LAHI+    L   F+ + DIH   A 
Sbjct: 630 VRLEQGRLIRKAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAM 689

Query: 784 EIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            +FG+  E+ V+P  RR+AK +NF I+YGIS F L+  L I R +A DYI+ YF R+PGI
Sbjct: 690 RVFGIEKEEDVTPNDRRNAKAVNFGIVYGISDFGLSNNLGITRKKAKDYIETYFERYPGI 749

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            EY+E      R  GYVET+F RR    +INS   +IR+  ER AIN+PIQGSAADI + 
Sbjct: 750 KEYMETVVRDARDTGYVETLFNRRRELPDINSRNFNIRSFAERTAINSPIQGSAADILKI 809

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI++ K+L + +   KMLLQ+HDE+V EVP +E+     ++  +ME A    ++L VPL
Sbjct: 810 AMINLDKALSEGQFKAKMLLQVHDEIVLEVPNDELEAIKALVKKTMEGA----VDLAVPL 865

Query: 963 KVNIKVSNNWQEE 975
             +      W E 
Sbjct: 866 LADENTGKTWYEA 878



 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 169/313 (53%), Gaps = 13/313 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+N L L+DGSS  +RAF+A        +   GL  NAI GF  ML  +++  +    
Sbjct: 1   MEKKNKLLLIDGSSVAFRAFFALYSQIDRFKNQSGLHTNAIYGFHLMLDHMMKRIQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E++ DYKA R K P+    Q P +R    A G+P  ++  +EA
Sbjct: 57  PTHILVAFDAGKTTFRTEMFADYKAGRAKTPDEFREQFPYIREMLTALGVPFYDLANYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   +AEK    F VTI+S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLDKMAEKTEVPFDVTIVSGDKDLIQLTDANTVVEISRKGVTDFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            G+ PE+ + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N    K  K +E
Sbjct: 177 MGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYENIDSFKASKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++   E A LS+ L  + T+ PITI LE L+    N   L+ F   ++F +L   + T 
Sbjct: 237 NLINDKEQAFLSKTLATINTESPITIGLEDLVYHGPNVQVLMEFYDEMDFKQLKAGLETE 296

Query: 292 YDCDAANIEPVVL 304
              + A I   V+
Sbjct: 297 VPQEKAEISFEVV 309


>gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 884

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/778 (28%), Positives = 365/778 (46%), Gaps = 35/778 (4%)

Query: 212 GNLENILINASR-----IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           G L+ +  N        +   K    + +   T  +S+K V    +      +E + +  
Sbjct: 127 GTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLMEKMGITP 186

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
                L + +        I  V    +     +      +         ++    ++  I
Sbjct: 187 KQFIDLKALMGDKSDN--IPGVTKVGEKTGLKLLLEYGSLEGVYENIDGMKKSKMKENLI 244

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL-E 385
              + + LS   + IN          +              Y    +    +Q+   L  
Sbjct: 245 NDKEQAFLSKTLATINITAPIAIGLDDINYSRPDLEKLVPFY----DEMGFKQFKDNLGA 300

Query: 386 TIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
           T     F +    +D+  +           +   D       I        +  ++    
Sbjct: 301 TKKQEKFDVAYTEVDSLSADMFTDDQFFYFEILGDNYHVENIIGFAWGNDKAIYASTNLD 360

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSH 503
           L K+ L   K            ++ K  K++L   GI +     D  L  Y+L S    +
Sbjct: 361 LLKDDL--FKAALAKP---IKTYDFKRSKVLLSHLGIDLPAPAFDSRLAKYLL-STVDDN 414

Query: 504 DIASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           ++++IA+ +  Y          K  K ++P      + +  H      V+      +  K
Sbjct: 415 ELSTIARLYTEYVLDSDEAVYGKGAKRAVP----DKAVLLSHLARKIVVLNHSEKAMLDK 470

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L   +   +   +++P+ +V+++MEI GI + ++ L+ +       +  L + IYDL+G 
Sbjct: 471 LTEHQQASLLFDMEQPLANVLAKMEIAGISVKKETLQDMEKANQAVIDELTQEIYDLAGM 530

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN++SPKQLG++LF K++ P+    KT    +TA D+ +     +PI+  ILE+RQ++K
Sbjct: 531 EFNINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAK 590

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           ++STY   L + I K  + +HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+ 
Sbjct: 591 LQSTYIVGLQDFILKDGK-IHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVP 649

Query: 740 PP-TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQM 797
               + L+S+DYSQIELR+LAHI+    L   F    DIH   A  +FG+   E V+P  
Sbjct: 650 ETADEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKAEDVTPND 709

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           RR+AK +NF I+YGIS + LA  L IPR  A  YI+ YF R+PGI +Y+E+     +  G
Sbjct: 710 RRNAKAVNFGIVYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKG 769

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           YVET+F RR    +IN+   ++R   ER AIN+PIQGSAADI + AMI++ K+L D +  
Sbjct: 770 YVETLFHRRRELPDINARNFNVRQFAERTAINSPIQGSAADILKIAMINLDKALVDGRFK 829

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           TKMLLQ+HDE++ EVP++E+    +++  +ME A    I L VPL  +      W E 
Sbjct: 830 TKMLLQVHDEIILEVPKDELEAIEKLVKETMESA----IELSVPLVADESAGQTWYEA 883



 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 166/313 (53%), Gaps = 12/313 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +  L L+DGSS  YRAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 7   MENKKKLLLIDGSSVAYRAFFALYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERIQ---- 62

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R    A GI   E++ +EA
Sbjct: 63  PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLTALGIKWYELENYEA 122

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+    ++++K 
Sbjct: 123 DDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLMEKM 182

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           GI P++ + L+AL GD  DNIPG+  +G KT   LL EYG+LE +  N   +K+ K +EN
Sbjct: 183 GITPKQFIDLKALMGDKSDNIPGVTKVGEKTGLKLLLEYGSLEGVYENIDGMKKSKMKEN 242

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   E A LS+ L  +    PI I L+ +     +  +L+ F   + F +  + +  T 
Sbjct: 243 LINDKEQAFLSKTLATINITAPIAIGLDDINYSRPDLEKLVPFYDEMGFKQFKDNLGATK 302

Query: 293 DCDAANIEPVVLD 305
             +  ++    +D
Sbjct: 303 KQEKFDVAYTEVD 315


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 196/533 (36%), Positives = 311/533 (58%), Gaps = 36/533 (6%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E   FL      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 330 GRVHRAPEPYKALRDLKEARGFL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 384

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 385 TTPE--GVARRYGGEWTEE----------------------AGERATLSERLFANLWGRL 420

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 421 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 480

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R+L+K
Sbjct: 481 SFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTK 540

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +KSTY D LP+ I+ RT R+HT ++  +T TGRL+S +PNLQNIP++T LGQ+IRRAFI+
Sbjct: 541 LKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIA 600

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                L++ DYSQIELR+LAH++    L +VF+   DIH   A+ +FGV  E V P MRR
Sbjct: 601 EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRR 660

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKTINF ++YG+S  RL+ +L IP  EA  +I RYF  FP +  +IEKT    R+ GYV
Sbjct: 661 AAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIGRYFQSFPKVRAWIEKTLEEGRRRGYV 720

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           ET+FGRR +  ++ +   S+R   ER A N P+QG+AAD+ + AM+ +   LE+  +  +
Sbjct: 721 ETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEE--MGAR 778

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           MLLQ+HDELV E P+E     +++    ME        L VPL+V + +  +W
Sbjct: 779 MLLQVHDELVLEAPKERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 827



 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 106/300 (35%), Positives = 158/300 (52%), Gaps = 10/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 9   EPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDG-----DSV 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD++
Sbjct: 63  IVVFDAKAPSFRHEAYEGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVL 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+    AEKEG+ V I++ DKDL QL+S    +        I    + +K+G+ P++   
Sbjct: 123 ASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPE-GYLITPAWLWEKYGLRPDQWAD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R++    RE IL + +  +
Sbjct: 182 YRALTGDESDNLPGVKGIGEKTARKLLEEWGSLERLLKNLDRLRPA-IREKILAHMDDLK 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +        + +  RL +FL+ LEF  L++         A    P
Sbjct: 241 LSWDLAKVRTDLPLEVDFAK--RREPDRERLRAFLERLEFGSLLHEFGLLESPKALEEAP 298


>gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7]
 gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7]
          Length = 870

 Score =  483 bits (1242), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/551 (37%), Positives = 315/551 (57%), Gaps = 20/551 (3%)

Query: 431 LSVHTSQDSTGKNTLTKEILSY--LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-E 487
           +      DS      T++ L+    K F  ++   K G++IK        +G+ +  +  
Sbjct: 331 VGFAVYNDSEAYFIGTEDALNCTNFKNFISDKKIEKYGYDIKKSINAAKWHGLEIENYVF 390

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           D+ L SY+L+      +I S+ + +    + Y  +   K  K  +P      S+V EH I
Sbjct: 391 DLQLASYILNPSLKD-EIRSVCEYYEYYDVFYDEEVYGKGAKKKVP----ETSRVAEHLI 445

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           + +  I  L      KL  E    +Y+ ++ P+  ++++ME  G ++D  +LKQ+  +  
Sbjct: 446 KQAKAIYILKDQAIEKLNNENQFELYKDVEMPVAKILARMEFQGAKVDSVVLKQLEEQFG 505

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           + +  LE+ I+ L+  +FN++SPKQLG++LF  L  P+G KTKTG   +T+ D+      
Sbjct: 506 REINILEKEIHTLANREFNIASPKQLGEVLFEDLGLPNGKKTKTGY--STSVDILNKLKD 563

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +PII  +L++R LSK+ STY   L + +    + +HT Y+ A T TGRL+S +PNLQNI
Sbjct: 564 IHPIIDKVLKYRTLSKLYSTYIIGLQDQVFIDGK-IHTIYNQALTQTGRLSSTDPNLQNI 622

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
           P+KT  G+ IR+AF+      L+S DYSQIELR+LAH+A +  L + F    DIHR  A+
Sbjct: 623 PVKTPEGKLIRKAFVPEYDY-LVSFDYSQIELRVLAHLAGVKSLIKAFNEDKDIHRHTAS 681

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           EIF V  E+V   MRR+AK +NF IIYG+S F LA Q+ +   EA ++IKRYF  +P I 
Sbjct: 682 EIFRVPEEQVDSTMRRNAKAVNFGIIYGMSDFGLAEQVGVSVGEAREFIKRYFENYPEIK 741

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            Y++   +F ++NGYV T+  R+    EIN      +   +R A+N+PIQGSAADI + A
Sbjct: 742 LYMDSNIDFCKKNGYVTTMLNRKRFIREINEKNYMRQEFGKRLAMNSPIQGSAADIIKVA 801

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           MI V + L+ H+L +KM+LQ+HDEL+F+V +EE+    +I+   M  A    I + V LK
Sbjct: 802 MIKVDELLKKHQLKSKMILQVHDELIFDVYQEELQEVMEIVAKGMTTA----IKMDVELK 857

Query: 964 VNIKVSNNWQE 974
                + NW E
Sbjct: 858 AEGSYAVNWYE 868



 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 107/301 (35%), Positives = 159/301 (52%), Gaps = 13/301 (4%)

Query: 5   NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L ++DG+S +YRA+YA      L    DG+P NA+ GF NML  +L+         + 
Sbjct: 2   KELVMIDGNSLLYRAYYATAAMGNLMVNKDGVPTNAVYGFANMLESILK-----GNPEYL 56

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FDY   TFRN+++  YK  R   P+ L  Q  ++R    A GI   EI+G+E DDII
Sbjct: 57  VVAFDYGKKTFRNDLFEVYKGTRSATPDELACQFSMIREYLTAHGIRYQEIEGYEGDDII 116

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T    A K+ F V+I+++DKD++QLV     +Y T K     EKI      + +G+ P+
Sbjct: 117 GTVAVKASKQRFKVSIVTSDKDMLQLVDDNISVYLTKKGVGELEKITPAKFKEIYGLIPD 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +M  L+ L GD  DNIPGIPG+G KTA  LL+EY  +EN+  +   +K  K  E I +  
Sbjct: 177 QMRDLKGLMGDKSDNIPGIPGVGEKTALKLLKEYHTVENLSEHLDDLKG-KMGEKIRDNI 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +   LS+++  +  DVP+ I LE    +  +   L  F +      L+ R++   +   A
Sbjct: 236 DQGLLSKRIATIIKDVPMEIDLEEYRYQGHDYNELAEFYRRYSMNSLLKRMSLNNEEVQA 295

Query: 298 N 298
            
Sbjct: 296 E 296


>gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 878

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/535 (36%), Positives = 305/535 (57%), Gaps = 19/535 (3%)

Query: 450 LSYLKKFFENEHFLK--IGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIA 506
           L  LK         K    ++ K  K++L   G+ +     D  L  Y+L S    ++++
Sbjct: 353 LDLLKDDLFKAALAKPIKTYDFKRSKVLLSHLGVDLPAPAFDSRLAKYLL-STVDDNELS 411

Query: 507 SIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +IA+ +  Y          K  K ++P   +    +  H      V+     ++  KL  
Sbjct: 412 TIARLYTDYVLDSDEAVYGKGVKRAVPKKAV----LLSHLARKIVVLNYSEKVMLDKLTE 467

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +   +   +++P+ +V+++MEI GI + +  L+++ A     +  L + IYDL+G +FN
Sbjct: 468 HQQASLLFDMEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEFN 527

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG++LF K++ P+    KT    +TA D+ +     +PI+  ILE+RQ++K++S
Sbjct: 528 INSPKQLGELLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQS 587

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-P 741
           TY   L + I  +  ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+    
Sbjct: 588 TYIVGLQDFI-LQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPETE 646

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRH 800
            + L+S+DYSQIELR+LAHI+    L   F    DIH   A  +FG+   E V+P  RR+
Sbjct: 647 DEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRN 706

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +NF I+YGIS + LA  L IPR  A  YI+ YF R+PGI  Y+E+     +  GYVE
Sbjct: 707 AKAVNFGIVYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVE 766

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T+F RR    +INS   +IR   ER AIN+PIQGSAADI + AMI++ K+L D +  TKM
Sbjct: 767 TLFHRRRELPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKM 826

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LLQ+HDE++ +VP++E+     ++  +ME A    I+L VPL  +      W E 
Sbjct: 827 LLQVHDEIILQVPKDELEAVKTLVKETMESA----IDLSVPLIADENAGQTWYEA 877



 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 167/313 (53%), Gaps = 12/313 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +  L L+DGSS  YRAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MENKKKLLLIDGSSVAYRAFFALYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R    A GI   +++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLSALGITFYDLENYEA 116

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+    ++++K 
Sbjct: 117 DDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLMEKM 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           GI P++ + L+AL GD  DNIPG+  IG KT   LL EYG+LE +  N   +K+ K +EN
Sbjct: 177 GITPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGVYENIDGMKKSKMKEN 236

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   E A LS+ L  +    PITI L+ +  +  +  +L+ F   + F +  + +    
Sbjct: 237 LINDKEQAFLSKTLATINISAPITIGLDDINYQGPDLDKLVPFYDEMGFKQFKDNLGAPK 296

Query: 293 DCDAANIEPVVLD 305
             +  ++    +D
Sbjct: 297 KQEKFDVSYAEVD 309


>gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J]
 gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J]
          Length = 881

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/532 (36%), Positives = 313/532 (58%), Gaps = 20/532 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509
              + F          ++ K  K++L    I + RG  D  L +Y+L S    + +++IA
Sbjct: 362 DVFQAFL---RKPMATYDFKRAKILLSHLNIDVPRGAFDARLANYLL-SNVDDNQLSTIA 417

Query: 510 QKWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           +   +   +       K  K + P   +    +  H  +   V+++    +  KL     
Sbjct: 418 RVHTNIHLESDDVVYGKGVKRAFPDKGL----LFAHLAKKIKVLVESKATMLDKLSDHDQ 473

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
           L ++E ++ P+ +V+++MEITGI+++++ L +++ +    +  L + IYDL+GE+FN++S
Sbjct: 474 LALFEDIEMPLANVLAKMEITGIKVNKETLVEMAEQNKVIIDRLTQEIYDLAGEEFNINS 533

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG ILF K++ P     KT    +TA D+ +      P++  IL++RQ++K++STY 
Sbjct: 534 PKQLGSILFEKMQLPIEMTKKTKTGYSTAVDVLERLAPIAPVVAKILDYRQITKLQSTYL 593

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKK 744
             L ++I +  + +HT Y    T TGRL+S++PNLQNIPI+ + G+ IR+AF +      
Sbjct: 594 IGLQDYIMEDGK-IHTRYVQDLTQTGRLSSIDPNLQNIPIRMEQGRLIRKAFTASSEDAL 652

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKT 803
           L+S+DYSQIELR+LAHI+    L   F    DIH   A  +F ++ E+ V+   RR+AK 
Sbjct: 653 LLSSDYSQIELRVLAHISGDQHLITAFNEDADIHTSTAMRVFAIDKEEDVTANDRRNAKA 712

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +NF I+YGIS F L+  L I R +A +YI  YF R+PGI +Y++      +  GYVET+F
Sbjct: 713 VNFGIVYGISDFGLSNNLGISRQKAKEYINTYFDRYPGIKDYMDSIVREAKDKGYVETLF 772

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            RR    +INS   ++R+  ER AIN+PIQGSAADI + AMI++ K+LE+ +  TKMLLQ
Sbjct: 773 KRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALEEGRFKTKMLLQ 832

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +HDE+V EVP++E+    Q++  +ME A    ++L VPL+ +     +W E 
Sbjct: 833 VHDEIVLEVPKDELEKVKQLVKETMEHA----VDLSVPLRADENSGKSWYEA 880



 Score =  332 bits (852), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 118/307 (38%), Positives = 164/307 (53%), Gaps = 13/307 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        R   GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNRLLLIDGSSVAFRAFFALYQQIDRFRNQAGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYK  R K P+    Q P +R   +A G+P  ++  +EA
Sbjct: 57  PTHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIREMLKALGVPYYDLVNYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T   IAE+    F VTI+S DKDL+QL    T +  + K     E+   +++++K
Sbjct: 117 DDIIGTLDKIAERTEVPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPDYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI PE+ + L+AL GD  DNIPG+  IG KT   LLQEYG+LE I  N    K  K +E
Sbjct: 177 MGITPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLQEYGSLEGIYANVDSFKPSKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N++     A LS+ L  + T+ PITI LE L+    N   L SF   + F +L   ++  
Sbjct: 237 NLINDKAQAFLSKTLATIDTNAPITIGLEDLVYHGPNHEALASFYDEMGFVQLRAALSNQ 296

Query: 292 YDCDAAN 298
              +   
Sbjct: 297 LPKEPEE 303


>gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
 gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
          Length = 834

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/508 (36%), Positives = 294/508 (57%), Gaps = 30/508 (5%)

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
            K   +   R G+ ++  ED +L++Y+ D   S  D A+  +++                
Sbjct: 355 AKDLTVWARREGVRVQPGEDPLLLAYLYDPTNS--DPAATVRRY---------------- 396

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITG 587
                      E     +    +LW +L  +L   E L  +Y  +++P+  V+++ME  G
Sbjct: 397 -----GAGDWSEDPAARALAAAELWRILGERLAGEEALWWLYREVERPLAGVLAEMEHAG 451

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           +++D   L+ +SAE+ + + ++E  ++ L+G  FNL+S  QL  IL+ +L      +T+ 
Sbjct: 452 VRVDVAYLEALSAELGREIAAIEAEVHRLAGRAFNLNSRDQLEVILYDELGLTPTRRTQK 511

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
              ++T+    +   G +PI++ IL +R+LSK+K TY D LP  ++  T R+HT Y    
Sbjct: 512 TGRRSTSAAALEALVGAHPIVERILAYRELSKLKGTYLDPLPRLVHPATGRIHTRYHQTG 571

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S +PNLQNIP++T++G++IRRAF++ P   L++ADYSQIELR+LAH++    L
Sbjct: 572 TATGRLSSSDPNLQNIPVRTEVGRRIRRAFVAEPGYVLVAADYSQIELRVLAHLSGDENL 631

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            +VF+   DIH   A+ +FGV  E V P  RR AKT+NF ++YG+SP RL+ +L I  +E
Sbjct: 632 KRVFQERRDIHTQTASWMFGVPPEAVDPFRRRAAKTVNFGVLYGMSPHRLSRELGIEYAE 691

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +I+RYF  +P +  YIE+T    R+ GYVET+FGRR +  +I S   ++R   ER A
Sbjct: 692 AERFIQRYFESYPRVQAYIERTLEQAREKGYVETLFGRRRYIPDIRSRNRNVREAAERMA 751

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
            N P+QG+AAD+ + AM+ +   +    L  +++LQ+HDELV E P+E     ++++   
Sbjct: 752 FNMPVQGTAADLMKLAMVKLAPEIRS--LGARLILQVHDELVLEAPQERAEAVARVVREV 809

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ME A      L VPL+V + +  NW E 
Sbjct: 810 MEGA----WALDVPLEVEVGIGENWLEA 833



 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 151/287 (52%), Gaps = 7/287 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   + +VDG    YR ++A   L+    G PV A+ GF   L KLL+            
Sbjct: 10  RPERILIVDGHHLAYRNYFALGELTTSR-GEPVQAVYGFARTLLKLLKEDG-----DCVI 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD P  +FR+E +  YKA R   PE   PQL  ++      G+   E+ G+EADD+I 
Sbjct: 64  VVFDAPQPSFRHEQFAAYKAQRAPTPEDFKPQLEKIKQLVDLLGLARFELAGYEADDVIG 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +    AE EG+ V I+++D+D  QL+S    +      E++  E V +K+G+   + V  
Sbjct: 124 SLAKKAEAEGYEVRIVTSDRDSYQLLSDKVRVLKP-DGEEVTPETVREKYGVTVAQWVDF 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +ALTGD+ DNIPG+ GIG KTAA LL E+G+LEN+  + + +     R+ +    E A L
Sbjct: 183 RALTGDASDNIPGVRGIGAKTAAKLLAEWGSLENLYAHLAEVTPPSVRKKLEAGREKAAL 242

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           SR L  + TD+ I +          +   L +FL+ALEF  ++  + 
Sbjct: 243 SRALSEIHTDLAIEVDFAACHRRPVDREALRAFLEALEFGSILRELG 289


>gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M]
 gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M]
          Length = 899

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 177/533 (33%), Positives = 294/533 (55%), Gaps = 9/533 (1%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502
           TLT +  + L ++  +    K  H  K     L   G ++ G   D  L +Y++  G+ S
Sbjct: 369 TLTPDDDAALGEWLADPAKPKALHEAKLAIHDLRGRGWTLNGVTSDTALAAYLVRPGQRS 428

Query: 503 HDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
             +  ++ ++L    R E  + ++ S+  D  +D    + AI  +  ++ L   L  +L 
Sbjct: 429 FTLDDLSLRYLRRELRAETPEQQQLSLLDDDDTDVAAAQTAILRARAVIDLADALDAELD 488

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                 +   ++ P+  V+++ME  GI +D  +L  + +  +  +    E  Y + G++ 
Sbjct: 489 RIDSTGLLADMELPVQHVLAEMETAGIAVDLTMLGGLQSHFADQIRDAAEAAYAVIGKQI 548

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NL SPKQL  +LF +L  P   +TKTG            +   +P ++++L  R ++++K
Sbjct: 549 NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLK 608

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            T  D L N +     R+HT ++     TGRL+S EPNLQNIPI+TD G++IR AF+   
Sbjct: 609 VT-VDGLLNSV-ADDGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVGD 666

Query: 742 TK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
              +L++ADYSQIE+RI+AH+++   L + F    D+H  VA+  FGV I++V+ ++RR 
Sbjct: 667 GYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRR 726

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K +++ + YG+S + L++QL+I   +A   + +YF RF G+ +Y+       R++GY  
Sbjct: 727 VKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFSRFGGVRDYLMAVVEQARKDGYTS 786

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T+ GRR +  E++S    +R   ERAA+NAPIQGSAADI + AMI V K+L++H L ++M
Sbjct: 787 TVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIEVDKALKEHALKSRM 846

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           LLQ+HDEL+FEV   E      ++   M  A      L VPL+V++    +W 
Sbjct: 847 LLQVHDELLFEVAAGEREQIEALVRDKMGSA----YPLDVPLEVSVGFGRSWD 895



 Score =  320 bits (821), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 158/305 (51%), Gaps = 10/305 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H
Sbjct: 8   STKPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR+E YP+YKANR   P+    Q+ + +    A GI  +   GFEADDI
Sbjct: 64  IAAAFDVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAPGFEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P
Sbjct: 124 IATLATQAEGEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTP 183

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++     ++  K  +++   
Sbjct: 184 VQYPDFAALRGDPSDNLPGIPGVGEKTASKWIVEYGSLQGLVDQVDSVRG-KVGDSLRAN 242

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +   +R+L  L  DVP+    E L L+  +  ++      LEF  L +R+  T     
Sbjct: 243 LASVVRNRELTDLVRDVPLAQTPEALRLQPWDRDQIHRLFDDLEFRVLRDRLFDTLAAVE 302

Query: 297 ANIEP 301
             ++ 
Sbjct: 303 PEVDQ 307


>gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 878

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/535 (36%), Positives = 304/535 (56%), Gaps = 19/535 (3%)

Query: 450 LSYLKKFFENEHFLK--IGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIA 506
           L  LK         K    ++ K  K++L   G+ +     D  L  Y+L S    ++++
Sbjct: 353 LDLLKDDLFKAALAKPIKTYDFKRSKVLLSHLGVDLPAPAFDSRLAKYLL-STVDDNELS 411

Query: 507 SIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +IA+ +  Y          K  K ++P   +    +  H      V+     ++  KL  
Sbjct: 412 TIARLYTDYVLDSDEAVYGKGVKRAVPKKAV----LLSHLARKIVVLNHSEKVMLDKLTE 467

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +   +   +++P+ +V+++MEI GI + +  L+++ A     +  L + IYDL+G +FN
Sbjct: 468 HQQASLLFDMEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEFN 527

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG++LF K++ P+    KT    +TA D+ +     +PI+  ILE+RQ++K++S
Sbjct: 528 INSPKQLGELLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQS 587

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-P 741
           TY   L + I  +  ++HT Y    T TGRL+S++PNLQNIP++ + G+ IR+AF+    
Sbjct: 588 TYIVGLQDFI-LQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPETE 646

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRH 800
            + L+S+DYSQIELR+LAHI+    L   F    DIH   A  +FG+   E V+P  RR+
Sbjct: 647 DEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRN 706

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +NF I+YGIS + LA  L IPR  A  YI+ YF R+PGI  Y+E+     +  GYVE
Sbjct: 707 AKAVNFGIVYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVE 766

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T+F RR    +INS   +IR   ER AIN+PIQGSAADI + AMI++ K+L D +  TKM
Sbjct: 767 TLFHRRRELPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKM 826

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LLQ+HDE++ +VP+ E+     ++  +ME A    I+L VPL  +      W E 
Sbjct: 827 LLQVHDEIILQVPKNELEAVKTLVKETMESA----IDLSVPLIADENAGQTWYEA 877



 Score =  332 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 167/313 (53%), Gaps = 12/313 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +  L L+DGSS  YRAF+A        +   GL  NAI GF  ML  LL+  +    
Sbjct: 1   MENKKKLLLIDGSSVAYRAFFALYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    QLP +R    A GI   +++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLSALGITFYDLENYEA 116

Query: 118 DDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
           DDII T   +AE E  + VTI+S DKDL+QL    T +  + K     E+    ++++K 
Sbjct: 117 DDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLMEKM 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           GI P++ + L+AL GD  DNIPG+  IG KT   LL EYG+LE +  N   +K+ K +EN
Sbjct: 177 GITPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGVYENIDGMKKSKMKEN 236

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   E A LS+ L  +    PITI L+ +  +  +  +L+ F   + F +  + +    
Sbjct: 237 LINDKEQAFLSKTLATINISAPITIGLDDINYQGPDLDKLVPFYDEMGFKQFKDNLGAPK 296

Query: 293 DCDAANIEPVVLD 305
             +  ++    +D
Sbjct: 297 KQEKFDVSYAEVD 309


>gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f]
 gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f]
          Length = 891

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 176/538 (32%), Positives = 284/538 (52%), Gaps = 9/538 (1%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG 499
               LT    + L  +  +    K GH++K   L L   G ++ G   D  L +Y+   G
Sbjct: 360 DPTALTAADSAALGAWLADPDRAKAGHDLKGPMLALAEAGFTLAGVTSDTALAAYLALPG 419

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           + S D+A +  ++L    K   ++    + +D   ++   E     +   L+L   L   
Sbjct: 420 QRSFDLADLTLRYLHRELKSDTETN-GQLTLDGSGEADEAEADAIRARAALELAAALDGD 478

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L       +   ++ P++ V+++ME  GI  D++ L ++    S  +  +    + L G 
Sbjct: 479 LERRSAARLLREMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAHGLVGR 538

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            FNL SPKQL  ILF +L  P   K KTG               D+P+I  +L  R +++
Sbjct: 539 SFNLGSPKQLQQILFDELALPKTKKIKTGYTTDADALAWLATQSDHPLIPVLLHHRDVAR 598

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           +K T  DSL   I+    R+HT ++     TGRL+S +PNLQNIPI+T  G++IRRAF+ 
Sbjct: 599 LK-TVVDSLIPMID-DAGRIHTTFNQMIAATGRLSSTDPNLQNIPIRTPQGRQIRRAFVV 656

Query: 740 PPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
            P    L++ADYSQIE+R++AH++    L + F +  D+H  VAA+ F + + +V P++R
Sbjct: 657 GPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHTFVAAQAFDLPVSEVDPELR 716

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R  K +++ + YG+S F LA QL I   EA +++  YF RF G+ +++    +  R++GY
Sbjct: 717 RRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLRGVVDQARRDGY 776

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
            ETI GRR +  ++ S  +  R + ER A+NAPIQGSAADI + AM+ V ++L    L +
Sbjct: 777 TETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKIAMLGVDRALRSRDLRS 836

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ++LLQ+HDELV E+   E      ++   M  A      + VPL+V++     W +  
Sbjct: 837 RLLLQVHDELVLEIAPGERVEVEALVRAEMGAA----YEMSVPLEVSVGSGLTWDDAG 890



 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 148/306 (48%), Gaps = 10/306 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M     L L+DG S  YRAF+A P+ +     G P NA+ GF +ML   L++ +     +
Sbjct: 1   MADRPRLLLLDGHSLAYRAFFALPVENFSTSTGQPTNAVYGFTSMLINALRDEK----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV +D P  TFR+  Y +YKA R + P   + Q+ L+    +A  +P +   G+EADD
Sbjct: 57  HVAVAWDLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCEALAVPGVSAPGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           +IAT    A  EG  V I++ D+D +QLV+    +  T K      +   + V  K+G+ 
Sbjct: 117 VIATLATQAAGEGMDVLIVTGDRDALQLVNEHVTVLMTRKGISDMTRFTPDEVQTKYGLS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +     AL GD  DN+P +PG+G KTA   +Q++G+L +++  A  I  K    ++  
Sbjct: 177 PTQYPDFAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLADLVDRADEIGGKT-GASLRA 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
                  +R L  L  +VP+ +    L L   +   +      L+F  L  R+       
Sbjct: 236 NLANVIRNRSLTELAREVPLELGPGDLRLHPWDREAVHQLFDTLQFRVLRERLYAALAVA 295

Query: 296 AANIEP 301
             + + 
Sbjct: 296 PPSADE 301


>gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1]
 gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1]
          Length = 850

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 172/494 (34%), Positives = 288/494 (58%), Gaps = 11/494 (2%)

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEH 541
              D  +  Y+L+  + S++   +A  +L  +   R E++        +++ +  +    
Sbjct: 364 PVFDASIAGYLLNPLKDSYEYNDLAADYLDLSIPSRTELIGKSSMKRAMEE-NKEKAVSC 422

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               S V  +   LL+  L    +  ++  ++ P+   + +ME  GI++++ LLK+    
Sbjct: 423 ICYMSYVAFRSRDLLQEALEKAGMDKLFYEIEMPLTYSLYRMEDAGIRVERKLLKEYGDR 482

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +   +  LE+ IY+ +GE FN++SPKQLG++LF  +K P G KTKTG   +TA D+ +  
Sbjct: 483 LKVRIAELEQKIYEETGETFNINSPKQLGEVLFDHMKIPGGKKTKTGY--STAADVLEKL 540

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D P ++ IL++RQL+K+ STYAD L  +I    +R+H  ++   T TGR++S EPNLQ
Sbjct: 541 ASDWPAVRLILDYRQLTKLNSTYADGLAAYIGPD-ERIHGTFNQTITATGRISSTEPNLQ 599

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           NIP++ +LG++IR+ F+       I ADYSQIELR+LAH++    L   ++ + DIH + 
Sbjct: 600 NIPVRMELGREIRKVFVPQEGCVFIDADYSQIELRVLAHMSGDQRLIGAYKQAEDIHAIT 659

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           A+++F V + +V+P  RR+AK +NF I+YGIS F L+  L I R EA++YI++YF  +PG
Sbjct: 660 ASQVFHVPLHEVTPLQRRNAKAVNFGIVYGISSFGLSEGLSITRKEASEYIEKYFETYPG 719

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  +++      ++ GY  ++FGRR    E+ S     R+  ER A+N+PIQG+AADI +
Sbjct: 720 VKTFLDGLVAEAKELGYAASMFGRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIK 779

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI V  +L    L ++++LQ+HDEL+ E   EE     +++   M+ A     +L V 
Sbjct: 780 IAMIRVDGALRKQGLRSRIVLQVHDELLIEAYREEADQVKELLAEEMKHAA----DLAVS 835

Query: 962 LKVNIKVSNNWQEE 975
           L+V     ++W + 
Sbjct: 836 LEVEANAGDSWFDA 849



 Score =  149 bits (376), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 33/262 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               + L+DGSS    AFY          GLP N + G  +M+ KLL        A +FA
Sbjct: 2   DRKRIILIDGSSMAENAFY----------GLPSNGVKGIQSMVMKLLDAKE----ADYFA 47

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD      R E             E LL Q  L++    + GI  ++ +G+ + DI+A
Sbjct: 48  AAFDSERENGRKEFLKSAGLY-----EELLKQEELLKETFHSMGISVLDKKGYASSDILA 102

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE------KIDIEHVIKKWGIPP 176
           +     ++E   + ++S D+ L+Q V     L      E         IE + +++G+ P
Sbjct: 103 SLAKRCQEEEGEIILLSGDRKLLQAVEEHVTLKLPAVGEDGLEFKSYSIEGIREEYGLEP 162

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             ++ +  LT           GIG KTA  L+++Y  +ENI     +I+  + RE +   
Sbjct: 163 GDLLGVFGLTE--------AKGIGEKTACDLIKKYHTIENIYQQMEKIESHRIRETLTRN 214

Query: 237 AETARLSRKLVMLRTDVPITIP 258
            E  R    L  LR D  I + 
Sbjct: 215 KEKVRKKEALSALRRDCDIRLD 236


>gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 478

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 152/538 (28%), Positives = 247/538 (45%), Gaps = 73/538 (13%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
             +P                                         + +  + + ++    
Sbjct: 301 GAKP-----------------------------------------AAKPQETVVIDESPS 319

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +     
Sbjct: 320 EPAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV 379

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                 V   ++D                +  L  LK   E+E   K+G N+KYD+ VL 
Sbjct: 380 -AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
            YGI +RG   D ML SY+L+S    HD+ S++ +WL +           +I  + I 
Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKH----------KTITFEDID 477


>gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 481

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 156/519 (30%), Positives = 253/519 (48%), Gaps = 58/519 (11%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L L+DGSS++YRAF+A P      + +P NAI G  NM+  +++    +      AV
Sbjct: 6   DNPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASDR----MAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           IFD    TFR+E+Y  YKA+RP +P+ L  Q+  +    +A G+P + I+G EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G LE +  N  +I        K   + + E  
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A+LS +L  ++ DV +    + L+ +  +   L+S    L F   +  +         
Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                             ++      T  + ++ SS++  T+  ++   P+         
Sbjct: 292 ------------------LDGGTGIVTADEQTKTSSVTVSTAATHAAAIPE--------- 324

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                I+   Y  I+N +D Q W++KL+     +F   TD +D   +  + ++ +  +  
Sbjct: 325 SPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFAVAEG- 383

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           +     V   ++D      +D          +++ LK   E+E   K+G N+KYD  V+ 
Sbjct: 384 EAAYLPVAHDYLDAPQQLERD---------WVIAQLKPLLEDESKAKVGQNLKYDASVMA 434

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
           RYG+ +RG   D ML SYV +S    HD+ S+A ++L +
Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQH 473


>gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
 gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
          Length = 876

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 194/561 (34%), Positives = 330/561 (58%), Gaps = 18/561 (3%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           DD    +       +++  + +   + +  +  S L  +F ++   K G ++K +  +  
Sbjct: 330 DDHGAFMHATINGFALYNGKQAVYISLVDAKKDSDLLAYFSSDMPHKYGFDVKRNLHLAE 389

Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKIS 534
             G+++   +D+ML + ++DS  +    A I +++    + + +++    K + P   I 
Sbjct: 390 NEGLTLNFHDDMMLAASLVDSSLT--TTAKIIERYGFENTVSYEDVYG--KPTKPNLIID 445

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           + +   +A   +  I +L+  + PKL   K+  +Y  ++ P+  V+  ME  GI+ D D+
Sbjct: 446 EEKQCMYACAFARNIFRLYAEITPKLQEYKMEKLYYEMEMPLTTVLYHMEREGIRCDIDI 505

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           L +++ E    +   ++ IY L+ ++FN++SPKQL ++LF  L  P+G K      ++TA
Sbjct: 506 LDRIATETMAKISEAQKEIYVLAAKEFNINSPKQLAEVLFDDLGLPTGKK------RSTA 559

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
               +   G +PII  ILE+R+LSKI STYA+ L  +I ++  ++HT Y+ ++T TGRL+
Sbjct: 560 AGELEKLQGKSPIIDYILEYRKLSKIYSTYAEGLKKYI-QQDGKIHTIYNQSATQTGRLS 618

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQNI ++ + G++IR+AF+      LIS+DY QIELR+LAH+A  T L + F+  
Sbjct: 619 SSEPNLQNISVRDEQGKEIRKAFLPENGCVLISSDYHQIELRMLAHMANETSLIEAFKEG 678

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
           +DIH   A ++F    ++++ Q RR AKT+NF I+YGIS F L+ QL + R EA D+I+R
Sbjct: 679 IDIHTKTAMDVFHKPQDEITAQDRRSAKTVNFGIVYGISDFGLSEQLGVSRYEAHDFIER 738

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           Y+  +P I  Y+++      + GYVET+ GRR    EI+    + R   +RAA+NAPIQG
Sbjct: 739 YYAAYPKIRIYMDQIVKDCEEKGYVETLCGRRREIPEIHDKNHATREFGKRAAMNAPIQG 798

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SAAD+ + AMI + + ++D K+ +KM+LQ+HDEL+F VP+EE+   +++I   M  A   
Sbjct: 799 SAADLIKLAMIHIDQMMKDAKVKSKMILQVHDELIFNVPKEEVDVMTKLINDGMVNAM-- 856

Query: 955 KINLRVPLKVNIKVSNNWQEE 975
             +L+VPL     + ++W E 
Sbjct: 857 --HLQVPLTAECSIGSDWYEA 875



 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 106/306 (34%), Positives = 170/306 (55%), Gaps = 14/306 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L L DG+S ++RA+YAT         DG P NA+ GF +M+ K +   + ++      
Sbjct: 7   KKLLLTDGNSMLFRAYYATAYGRPMTTSDGTPTNAVFGFASMIQKAIDIIQPDA----VL 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR+E+Y DYK  R   P+ L+PQ  LVR    AF I  +E+Q  EADD+I 
Sbjct: 63  VAFDAGKHTFRHELYADYKGGRKPAPDDLVPQFKLVRDFLDAFAIAWVEMQNIEADDLIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T +  A+   +   ++++D D++QL+  TT +    K     + +  E + ++ GI P +
Sbjct: 123 TISKKAKD--YQTYVLTSDHDMLQLIDETTSVLLMKKGITDMDVVTPESLKEQMGIEPLQ 180

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD  DNIPGIPGIG KTA  LL+EYG +EN++ N  ++K    ++ ++E  +
Sbjct: 181 IIDMKGLMGDKSDNIPGIPGIGEKTALKLLEEYGTVENVIANEDKLKGA-LQKKVMEGHD 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +A LS+KL  +R D+ + +  + L     N P+L+ FL+ LE   L  R +     +   
Sbjct: 240 SALLSKKLATIRRDIDVEMSEKELSFT-PNYPQLVKFLQMLEMNTLARRFSDKITIEENT 298

Query: 299 IEPVVL 304
            E +V+
Sbjct: 299 TEEIVV 304


>gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99]
 gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99]
          Length = 899

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 177/533 (33%), Positives = 294/533 (55%), Gaps = 9/533 (1%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502
           TLT +  + L ++  +    K  H  K     L   G ++ G   D  L +Y++  G+ S
Sbjct: 369 TLTPDDDAALGEWLADPAKPKALHEAKLAIHDLRGRGWTLNGVTSDTALAAYLVRPGQRS 428

Query: 503 HDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
             +  ++ ++L    R E  + ++ S+  D  +D    + AI  +  ++ L   L  +L 
Sbjct: 429 FTLDDLSLRYLRRELRAETPEQQQLSLLDDDDTDVAAAQTAILRARAVIDLADALDAELD 488

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                 +   ++ P+  ++++ME  GI +D  +L  +    +  +    E  Y + G++ 
Sbjct: 489 RIDSTGLLTDMELPVQHLLAEMETAGIAVDLTMLGGLQRHFADQIRDAAEAAYAVIGKQI 548

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NL SPKQL  +LF +L+ P   +TKTG            +   +P ++++L  R ++++K
Sbjct: 549 NLGSPKQLQVVLFDELRMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLK 608

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            T  D L N +     R+HT ++     TGRL+S EPNLQNIPI+TD G++IR AF+   
Sbjct: 609 VT-VDGLLNSV-ADDGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVGD 666

Query: 742 TK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
              +L++ADYSQIE+RI+AH+++   L + F    D+H  VA+  FGV I++V+ ++RR 
Sbjct: 667 GYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRR 726

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K +++ + YG+S + L++QL+I   +A   + +YF RF G+ +Y+       R++GY  
Sbjct: 727 VKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFSRFGGVRDYLMAVVEQARKDGYTS 786

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T+ GRR H  E++S    +R   ERAA+NAPIQGSAADI + AMI V K+L++H L ++M
Sbjct: 787 TVLGRRRHLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIEVDKALKEHALKSRM 846

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           LLQ+HDEL+FEV   E      ++   M  A      L VPL+V++    +W 
Sbjct: 847 LLQVHDELLFEVAAGEREQIEALVRDKMGSA----YPLDVPLEVSVGFGRSWD 895



 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 159/305 (52%), Gaps = 10/305 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H
Sbjct: 8   STKPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTH 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A  FD    TFR+E YP+YKANR   P+    Q+ + +    A GI  +   GFEADDI
Sbjct: 64  IAAAFDVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAPGFEADDI 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P
Sbjct: 124 IATLATQAEGEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTP 183

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +     AL GD  DN+PGIPG+G KTA+  + EYG+L+ ++     ++  K  +++   
Sbjct: 184 VQYPDFAALRGDPSDNLPGIPGVGEKTASKWIVEYGSLQGLVDQVDSVRG-KVGDSLRAN 242

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
             +   +R+L  L  DVP+    E L+L+  +  ++      LEF  L +R+  T     
Sbjct: 243 LASVVRNRELTDLVRDVPLAQTPEVLLLQPWDRDQIHRLFDDLEFRVLRDRLFDTLAAVE 302

Query: 297 ANIEP 301
             ++ 
Sbjct: 303 PEVDQ 307


>gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87]
          Length = 687

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 195/526 (37%), Positives = 319/526 (60%), Gaps = 14/526 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
           SY K   ++E  L+   + K    +L RYG  +  F ED+ L +++L S  +  D  S+ 
Sbjct: 174 SYFKNMLKHETSLRTW-DAKEMMHLLQRYGFYVPSFKEDLHLAAFLLHSQAT--DTDSLI 230

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
                   + I    K +  ++     ++       +  +      +  +L  + LL +Y
Sbjct: 231 SSLGIELPETIHDLLKKAKTVEACHIDRLLPVTCAWTWQLSIRQDNIFDELKKDNLLDLY 290

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
           E ++KP++ ++ +ME  GI ID+++L ++ A+    L SL + I++++   FN++SPKQL
Sbjct: 291 ENIEKPLVRILFEMENQGIHIDENVLDEIGAKTDTILESLTQQIHEMAHMVFNINSPKQL 350

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
             +L+ +L    G K ++     T+ ++ +   G +PII  +L++R+ SKIKSTY + L 
Sbjct: 351 AGVLYDELNLKGGGKKRS-----TSAEVLEKLKGSHPIIDVLLDYRKYSKIKSTYIEGLK 405

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            HI ++  ++HT ++ A T TGRL+S +PNLQNI ++ + G++IR+AF++    KL+SAD
Sbjct: 406 KHI-QQDSKIHTCFNQAMTQTGRLSSSDPNLQNISVRDEQGREIRKAFVAQKGYKLLSAD 464

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH+A  T + + F+   DIH   A+ IF V+ E V+P MRR AKT+NF I+
Sbjct: 465 YSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRVAKTVNFGIV 524

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG + F L+ QL+I R EA ++++ YF  +P IH+++ +  +F ++NGYVET+F RR   
Sbjct: 525 YGQTEFGLSQQLKISRKEAGEFMETYFASYPNIHQFMNQLIDFCKENGYVETMFHRRRMI 584

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            EIN      R   +RAA+NAPIQGSAAD+ + AMI V +++++  + +KMLLQIHDEL+
Sbjct: 585 PEINDKNFMTREFGKRAAMNAPIQGSAADLIKIAMIRVDQAMKEKNVKSKMLLQIHDELI 644

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           F VP++E+     ++  +ME+A      L+VPLK +I    +W E 
Sbjct: 645 FLVPDDELEVMQALVKEAMEQAM----ELKVPLKASINFGQSWYEA 686



 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 2/112 (1%)

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ L+ + GDS DNIPG+ GIG K A  LL +YG+LEN+  N  +IK  K++E +L 
Sbjct: 2   PKQIIDLKGIMGDSSDNIPGVAGIGEKGATKLLVQYGSLENVYENIDQIKG-KQKEKLLN 60

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
             E A +S++L  + T +     ++    +  +  ++  F +  E   LI++
Sbjct: 61  DKENAFMSKELATIYTSMDFPFTIQDCKFDGYD-EKVNDFYQKYEMRSLISK 111


>gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1]
 gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1]
          Length = 869

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 191/529 (36%), Positives = 307/529 (58%), Gaps = 18/529 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
                + ++E + K  +NIK   L     GI ++G   D+ L SY+L+      ++ SI 
Sbjct: 352 QDFLNYLKDEKYSKYSYNIKAQILSARWNGIDIKGMNFDLQLASYILNPSLKD-EMKSIC 410

Query: 510 QKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
             +    + Y  +   K  K  IP        +  H +  +  I  L      +L  E+ 
Sbjct: 411 DYYDYDSVQYEEEVFGKLAKKHIP----EIDLLARHTVSKAKAIYDLKDEAIQRLKDEEQ 466

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y+ L+ P+  +++ ME  G +ID  +LK++  +  + +  +EE+IY L+ ++FN+SS
Sbjct: 467 FDLYQNLELPVTYILADMEYVGAKIDIHVLKEMEMDFEQQIKQIEEDIYMLADKEFNISS 526

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG++LF +L  P+G KTKTG   +T+QD+ +   G +PII  I ++R L+K+ STY 
Sbjct: 527 PKQLGEVLFERLGLPNGKKTKTGY--STSQDILEKIEGLHPIIPLIQKYRMLTKLSSTYV 584

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
             L   +    + +HT Y+ A T TGRL+S+EPNLQNIP++ + G+ IR+AFI      L
Sbjct: 585 KGLQEQVFADGK-IHTIYNQALTQTGRLSSIEPNLQNIPVRQEEGKLIRKAFIPSHDY-L 642

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ++ DYSQIELRILAH+A +  L + F    DIH   AA +F V  E+V+  MRR AK +N
Sbjct: 643 VTFDYSQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRRQAKAVN 702

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F IIYG+  F+L+ Q+ +   EA ++I+RYF  +P I  Y+++     +  GYV T+  R
Sbjct: 703 FGIIYGMGEFKLSQQIGVSLKEAKEFIRRYFEEYPEIKVYMDQIVEDCKNTGYVSTVLNR 762

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           + +   IN     +R    R A+N+PIQGS ADI + AM+ V++ ++D  L ++M+LQ+H
Sbjct: 763 KRYIPTINDKNFMVREQARRFAMNSPIQGSGADILKLAMMKVNQLMKDKHLKSEMILQVH 822

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+F+V ++E+    ++I  +M +A      + VPLKV+   ++NW +
Sbjct: 823 DELIFDVYKDELDEMMKLIKSAMVEA----FQMDVPLKVDGAYASNWYD 867



 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/290 (33%), Positives = 152/290 (52%), Gaps = 13/290 (4%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG+ +++ ++YA      L    DG+P NA+ GF N L  +++            V
Sbjct: 4   LVLIDGNYWLFSSYYATAAMGNLMVNKDGIPTNAVFGFANRLENVIKK-----NPKGIMV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+++  +YK  R + PE L  Q  +VR    A  IP  E++G+E DDII T
Sbjct: 59  AFDAKGKTFRSDLLEEYKGTRKETPEELKCQFEIVREFLDAHQIPYCELEGYEGDDIIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEKM 179
                 K+G+ V I++ DKD+MQLV     +Y     T  ++ I  +   +K+ + P++M
Sbjct: 119 LATQGSKQGYQVNIMTGDKDMMQLVDEHIHVYKRNTKTKTDDVITPKTFYEKYELQPDQM 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L  L GDS DNIPGIPG+G KTA  LL EY  +EN+  + S IK  K  E I E  E 
Sbjct: 179 RDLLGLMGDSADNIPGIPGVGEKTALKLLHEYQTIENLKDHCSEIKG-KMGEKIRENIEL 237

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
              S+++  +  D+P+ + L+       +  +L  F +  +   L+ +++
Sbjct: 238 GIQSKQIATILKDIPLDVTLDDCHYVGYDFDKLKDFYQKYDMNSLLKKIS 287


>gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
 gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
          Length = 878

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 176/493 (35%), Positives = 287/493 (58%), Gaps = 12/493 (2%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHA 542
             DI + +Y+L+     +   +IA+ +L     + KE++   K  + +   ++   ++  
Sbjct: 394 VHDIGVAAYLLNPMEDVYSYDAIARDYLGATLPSEKELVG--KDELNLFSFTNETFRKLF 451

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
              + +      LL  +L  +++  +Y  ++ P +  +  ME  GI++D+  L   S ++
Sbjct: 452 AYKALIPYLAGDLLMERLEKQEMFTLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKL 511

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              +  L   I   +G++FN++SPKQLG ILF  +    G KTKTG   +T+ D+ +   
Sbjct: 512 QSRIDELHTEIIGYAGKEFNINSPKQLGVILFEDMGLSGGKKTKTGY--STSVDVLEKIK 569

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D+PII  ILE+RQL+K+ STYA  L  +I++   R+H  ++   T TGR++S +PNLQN
Sbjct: 570 NDHPIIPAILEYRQLTKLNSTYAQGLTAYISEDG-RIHGTFNQTITATGRISSTDPNLQN 628

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP+K +LG+ IR+AFI       + ADYSQIELR+LAH+++   +   F N +DIH   A
Sbjct: 629 IPMKLELGRLIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAFLNHVDIHATTA 688

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +E+F V I++V+   RR+AK +NF I+YGIS F L+  L I R EAADYI++YF  +  I
Sbjct: 689 SEVFDVPIDQVTSLQRRNAKAVNFGIVYGISAFGLSEDLGISRKEAADYIEKYFATYKNI 748

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             ++++     + +G V T+FGR     E+ S     R+  ER A+N+PIQG+AADI + 
Sbjct: 749 KSFLDRQVEEAKADGVVRTMFGRIRPVPELRSSNFMTRSFGERVAMNSPIQGTAADIIKI 808

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AM  V+  L+   L ++++LQIHDEL+ E  ++E+     I+   MEK  +   ++ VPL
Sbjct: 809 AMFRVNMELKKRGLKSRLILQIHDELLVETAKDEVD----IVKEIMEKEMMGAADMAVPL 864

Query: 963 KVNIKVSNNWQEE 975
           ++ I   +NW + 
Sbjct: 865 EIGISEGDNWYDA 877



 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 177/313 (56%), Gaps = 13/313 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N + L+DG S + RAFY  P L+  ++GL  NA+ GF N+++K++   + +    H  V 
Sbjct: 2   NKILLIDGHSILNRAFYGLPDLTN-YEGLHTNAVLGFLNIIFKIMDEEKPD----HMCVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y  YK  R  +PE L  Q+PL++    A  +  +E  G+EADDII T 
Sbjct: 57  FDVHEPTFRHLKYSAYKGTRKPMPEELREQVPLMKEVLTAMHVTIVEKGGYEADDIIGTI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
           + +AE++G+A  I+S D+DL+QL + T  +     +      E    + V++ +G+ P +
Sbjct: 117 SRMAERDGYATVIVSGDRDLLQLATDTILVRIPKTKATGTTIENYYAKDVVEAYGVTPVQ 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + ++ L GD+ DNIPG+PGIG KTAA L+ EYG++ENIL +   +K  + ++N+ E  +
Sbjct: 177 FIDMKGLMGDTSDNIPGVPGIGEKTAAKLMIEYGSMENILDHLDTVKPPRVQKNLTENMD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +S+ L  ++ D  + + L+ + +E           K L F  L+ +  T    +AA 
Sbjct: 237 LAVMSKDLATIKLDCKLDVSLDEMTIESLFNEDSYKIFKRLGFNSLLKKFDTV--TEAAE 294

Query: 299 IEPVVLDINTTEN 311
           I+PV+  + TTE 
Sbjct: 295 IDPVITLLETTEQ 307


>gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
          Length = 897

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 177/550 (32%), Positives = 294/550 (53%), Gaps = 21/550 (3%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG 499
               L+ E  + L  +  +E   K  H +K+    L   G ++ G   D  L +Y++  G
Sbjct: 352 DPTALSVEDDAALADWLADESRPKAVHEVKWALHALRGRGWTLTGVTSDTALAAYLVRPG 411

Query: 500 RSSHDIASIAQKWLSYTRKEILKSR---KSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           + + ++  +A ++L    K    +    + S+  D     +  +  + ++  + +L   L
Sbjct: 412 QRTFNLDDLALRYLRRELKAEDGAGDDGQLSLLDDDADAQRAADQLMLSAQAVAELADTL 471

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
             +L       + + ++ P+  V++ +E  GI +D D L  +  + ++ +    E+ Y++
Sbjct: 472 DTELERIDSSALLQEMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQRVRDAAESAYEV 531

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            GE+ NL SPKQL  ILF KL  P   KTKTG               ++P +K++LE R 
Sbjct: 532 IGEQVNLGSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFLKHLLEHRD 591

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            ++++ T  + L   +    QR+HT ++     TGRL+S +PNLQNIP++T+ G++IR A
Sbjct: 592 ATRLRVT-VEGLQKTV-ADDQRIHTTFNQTVAATGRLSSTDPNLQNIPVRTEAGRQIRHA 649

Query: 737 FISPPT-----------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           F+  P            + L++ADYSQIE+RI+AH+++   L + F    D+H  V +  
Sbjct: 650 FVVAPGPVAVGSGNIEFESLMTADYSQIEMRIMAHLSEDEGLIEAFNTGEDLHNFVGSRA 709

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FGV +++V PQMR   K +++ + YG+S + LA QL I R EA   ++ YF RF G+ +Y
Sbjct: 710 FGVPVDQVDPQMRSRVKAMSYGLAYGLSAYGLAAQLGISREEAKQQMEAYFDRFGGVRDY 769

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           + +     R+N Y  T+FGRR +  ++NS     R   ER A+NAPIQG+AADI + AMI
Sbjct: 770 LHRVVEEARRNEYTATLFGRRRYLPDLNSDNFQRRQSAERMALNAPIQGTAADIIKVAMI 829

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +V K L   +L+++MLLQ+HDELV EV   E      ++   M  A    I+L VPL+V+
Sbjct: 830 NVQKRLRTEQLSSRMLLQVHDELVIEVATGEQAAVEALVREEMGGA----IDLSVPLEVS 885

Query: 966 IKVSNNWQEE 975
           +    +W + 
Sbjct: 886 VGYGRSWDDA 895



 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 104/380 (27%), Positives = 180/380 (47%), Gaps = 16/380 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG S  YRAF+A P  + + + G   NA+ GF +ML  LL++       +H A  FD
Sbjct: 1   MLLDGHSLAYRAFFALPAENFKTNTGQSTNAVYGFTSMLINLLRDEE----PTHIAAAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR++++P+YKA R K P+    Q+ L +    A GIP + I G+EADDIIAT   
Sbjct: 57  VSRQTFRSDMFPEYKAQRSKSPDEFRGQVDLTKEVLDAMGIPVMAIDGYEADDIIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            A+++G+ V +++ D+D +QLV+    +    +      +   + V KK+G+ P +    
Sbjct: 117 AADQQGYRVFVVTGDRDSLQLVNENITVLYPKRGVSEMTRFTPDEVEKKYGLTPAQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+PGIPG+G KTAA  ++EYG+ E ++  A  ++  K  +++        +
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWIREYGSFEELVNRADEVRG-KVGDSLRANLAGVIM 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +R+L  L  D+ +    + L L   +  R+      LEF  L +R+ +T        E  
Sbjct: 236 NRRLTELVRDMQLPAGPDELELHGWDRDRIHQLFDDLEFKVLRDRLFSTLTSVEPEAE-S 294

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
             D++ T      +   +   T    S  +    +    +  ++     L       +  
Sbjct: 295 GFDLSGTRLGAGEVAGWLSAHTASGRSGLAVTGPRVVVGSDVES-----LAIAAADGEAA 349

Query: 363 INNDSYTKIVNTKDIQQWVQ 382
             + +   + +   +  W+ 
Sbjct: 350 FVDPTALSVEDDAALADWLA 369


>gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 867

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 206/604 (34%), Positives = 336/604 (55%), Gaps = 36/604 (5%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSV 433
           +  + K E  G+ S     D  D +      I  S  +      F    + +   +  ++
Sbjct: 295 EGLLSKGEGEGTLSLPECRDVTDPY---LFGIVFSDAENAASAGFFLAREEDEEVLYFAL 351

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLM 492
              +          E L+ L     +E  L    ++K     L R  IS +G ++D+ L 
Sbjct: 352 SKDRLYRFHGFPFGEKLNAL-----SEKTLLYTLSLKEQ---LSRTEISEKGNWQDLSLA 403

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           +Y+L+  + S+D   +++ +L      +L S K     +     +  ++    + + L  
Sbjct: 404 AYLLNPLKDSYDYDDLSRDYLGL----LLPSEK-----ELGDSERPGKY---RAFLSLLS 451

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
              L  +L   K   +Y  ++ P++  + +ME +GI +D++ L    AE+ + +  + E 
Sbjct: 452 GKKLLSRLDK-KERELYREIELPLVFTLHEMEESGILVDREALLSYGAELREKIGEIRER 510

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
           IY  +GE+FNL+SP+QLG ILF KL  P G KTKTG   +TA D+ +    +N +  +IL
Sbjct: 511 IYREAGEEFNLNSPQQLGQILFEKLGLPGGRKTKTGY--STAADVLEKLSEENQLASDIL 568

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
           E+R  SK+ STYA+ L + I +   R+H  ++   T TGR++S +PNLQNIPI+T++G++
Sbjct: 569 EYRTYSKLNSTYAEGLLSWIREDG-RIHGHFNQMVTATGRISSTDPNLQNIPIRTEMGRR 627

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
            RR FI       I ADYSQ+ELRILA ++    L + ++N+ DIH + A+E+F V + +
Sbjct: 628 FRRVFIPKEGSIFIDADYSQVELRILAALSGDEKLIRAYQNADDIHAVTASEVFHVPLSE 687

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           V+PQ+RR+AK +NF I+YGIS F L+  L I R EA +YI+RYF  +PG+ ++++     
Sbjct: 688 VTPQLRRNAKAVNFGIVYGISAFGLSEGLSISRQEAKEYIERYFETYPGVKKFLDGEVEL 747

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
            R+ GYV TIFGR+    +I+S   + R+  ER A+N+PIQGSAADI ++AM  V ++L+
Sbjct: 748 ARKQGYVRTIFGRKRPVPDISSSNFARRSFGERVAMNSPIQGSAADIMKKAMNEVSRALK 807

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
                 +++LQ+HDEL+ E PE+E     ++++ SM+ A      LRVPL  + K   NW
Sbjct: 808 AGAFRARIVLQVHDELLLETPEKEADQVEELLILSMQNAA----KLRVPLIADAKRGRNW 863

Query: 973 QEEN 976
           +E +
Sbjct: 864 EEAH 867



 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 106/350 (30%), Positives = 169/350 (48%), Gaps = 16/350 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            EN L L+DG S + RAFY  P L+   +G   NA+ GF N    +L    +   A H A
Sbjct: 2   SENRLLLIDGHSILSRAFYGIPELTN-SEGKHTNAVYGFLN----ILLKELELEEADHLA 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD PA TFR++++P+YK  R  +PE L  Q+PL++    +  IP ++ +G+EADDI+ 
Sbjct: 57  VAFDLPAPTFRHKLFPEYKGTRKAMPEELREQVPLMQELLSSMHIPILKKEGYEADDILG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPP 176
           T     +KEG  V I+S D+DL+QL      +                 E V  +W + P
Sbjct: 117 TIAKRMQKEGKEVVIVSGDRDLLQLADTRIKISLPKTSRGQTEILSYFPEDVRAEWKVSP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-----IKQKKRRE 231
           E+ + L+AL GDS DNIPG+PG+G KTA  ++Q Y  +EN   +A        ++ +  +
Sbjct: 177 EEFIDLKALMGDSSDNIPGVPGMGPKTAEWIIQHYHTIENAKEHALEEDFKVPRKPRAGQ 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +LE+ ++ARLS+ L  +  +VPI        +E+      ++ ++ LEF  L+ R    
Sbjct: 237 ELLEHWDSARLSKTLATIFLEVPIDFDFRDARVENLFNEESLAMVRRLEFKSLVKRFDEG 296

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
                     + L                       ++ F    ++  ++
Sbjct: 297 LLSKGEGEGTLSLPECRDVTDPYLFGIVFSDAENAASAGFFLAREEDEEV 346


>gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
 gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
          Length = 858

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 200/526 (38%), Positives = 310/526 (58%), Gaps = 19/526 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHD--IASIA 509
            KK  E +       + K    +L RYG     F +D+ +  ++L+S  +  D  + ++ 
Sbjct: 348 FKKILETKEISTW--DTKEMMHLLDRYGFKWNTFNDDLHIAGFLLNSTATDSDAVLEAL- 404

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
              L  +  ++ K  K   P   ++  Q   H++  +  + +    +   L  E +L +Y
Sbjct: 405 HITLPESFHDVSKKTKEE-PAFSLNREQALCHSL--TQQLYEKKGEILQSLKEENVLSLY 461

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             ++ P+  V+  ME  GI I +  L +  A +++ L +L + IY  +G  FN++SPKQL
Sbjct: 462 REIEMPLTRVLFSMEQEGISIQESFLDEYGALLNEKLETLAQQIYSHAGMIFNINSPKQL 521

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
            ++LF +L   SG K ++     T+ D+ +   G +PI+ +ILE+R++SK+ STY D L 
Sbjct: 522 ANVLFDELNLSSGGKKRS-----TSADVLEKLRGKHPIVDDILEYRKISKVSSTYIDGLK 576

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            HI    Q++HT ++   T TGRL+S EPNLQNI I+ +LG++IR+AF++     L+SAD
Sbjct: 577 KHIRSD-QKIHTSFNQTMTQTGRLSSSEPNLQNISIRDELGKEIRKAFVAQEGYHLLSAD 635

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+LAH+A    + + F   LDIH   A  IF  + E+V    RR AKT+NF I+
Sbjct: 636 YSQIELRMLAHMANEDHMIKAFNEGLDIHTKTATLIFNCSPEEVDEHKRRIAKTVNFGIV 695

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG + F L++QL I R EA +++K YF  +P IHEY+ +  +F ++NGYVET+F RR   
Sbjct: 696 YGQTEFGLSSQLNITRKEAGEFMKMYFESYPKIHEYMNQLIDFCKENGYVETLFHRRREI 755

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            EIN      R   +RAA+NAPIQGSAAD+ + AM+ + ++L+D  + +KMLLQIHDEL+
Sbjct: 756 PEINDKNFMTREFGKRAAMNAPIQGSAADLIKIAMLKMDQALKDANVNSKMLLQIHDELI 815

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           F VP+EE+    +++  +ME A      L+VPLK +I V  +W E 
Sbjct: 816 FLVPDEELDLMQKLVKETMESAM----ELKVPLKASISVGKSWYEA 857



 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 101/410 (24%), Positives = 177/410 (43%), Gaps = 18/410 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L L+DG+S ++RA+YAT         +G+P NA+ GF  ML K +     +       
Sbjct: 2   KKLLLLDGNSMLFRAYYATLYTHRMTTSNGIPTNAVYGFVMMLNKAIDIIEPDK----IL 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D    TFR++ +  YK  R  + E L+ Q P+VR    A GI   E +G+EADDII 
Sbjct: 58  VAWDAGKPTFRHKQFAAYKGTRKPLDEELIVQFPIVREYLDAAGIKRYEQEGYEADDIIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           +            TI+++D+DL+QL+ P+T +    K     E +D +++   +GI P +
Sbjct: 118 SMAKCC--NDIQTTILTSDRDLLQLIDPSTHVLLMKKGLSEMELMDEQNLFDTYGITPSQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++ L GD+ DNIPG+ G+G KTA  LL +Y  +EN+  +   +K K + +   +  +
Sbjct: 176 VIDMKGLMGDTADNIPGVQGVGEKTALRLLNQYSTVENVYAHIDEVKGKLKEKL-EKDKD 234

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A +S +L  + T + +   L            +  F +  E   L+NR     +     
Sbjct: 235 NAFMSLELATIYTKMELPFSLNDCEFTGIQED-VNGFYEKYEMRSLVNRTKQAKNEKWPL 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT----SKINSEQTPQKLFLER 354
            E    ++   E+  +            +   F    D+T    S  N+ +      +  
Sbjct: 294 KEVEHFEMFDIEDLMVLPVCTQQPYLDQQLYGFMIPKDKTIYYISVENALEDTNFKKILE 353

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
            +++S +      +           +   L   G       TD+     +
Sbjct: 354 TKEISTWDTKEMMHLLDRYGFKWNTFNDDLHIAGFLLNSTATDSDAVLEA 403


>gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100]
          Length = 864

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 167/546 (30%), Positives = 289/546 (52%), Gaps = 28/546 (5%)

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIM 490
             H   +    +   K+    +K +  +    K  H+ K     L   G+ + G   D  
Sbjct: 343 GDHVGVEMDLADLDPKD-EKAIKTWLADPASPKWFHDAKRAFHALAPQGLELDGVEHDAS 401

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           + +Y+L        +  I Q                 +P +              +  + 
Sbjct: 402 IAAYLLRPDVRISGLGDILQS-----------QAGRELPANADGFD--------RAQAVR 442

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            L  +L  KL   K   +Y  L+ P+  ++++ME  GI +D + L+++S + +  +    
Sbjct: 443 DLVKVLTEKLAAAKQEELYYDLEVPLCLILARMEHEGIAVDGEHLQELSNDYAAKIDEEI 502

Query: 611 ENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
               +L+G+   NLSSPKQL  +LF     P   +TKTG     A+  +     ++P + 
Sbjct: 503 AAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTGYSTAAAELEKLTAQTNHPFLA 562

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           +++  R+  K+K+T  D L   I     R+HT ++     TGRL+S +PNLQNIP++TD 
Sbjct: 563 HLMAHREYQKMKTT-IDGLIEAIGDDG-RIHTTFNQKGAATGRLSSSDPNLQNIPVRTDA 620

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           G++IR AF +   + L++ADYSQIE+R++AH+++   L + +++  D+H  V + +F V 
Sbjct: 621 GRRIRAAFHAGWGETLLTADYSQIEMRVMAHLSQDEGLIEAYKSGEDLHNYVGSRVFDVP 680

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +++V+P++RR  K +++ ++YG+S F L+ QL I   EA   ++ YF RF G+  Y+++ 
Sbjct: 681 VDQVTPELRRRVKALSYGLVYGLSAFGLSQQLGISAGEAKVIMENYFTRFGGVKRYLDEV 740

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
            +  ++ GY ET++GRR +  E+NS     R   ERAA+NAPIQG+AADI + AM+ V +
Sbjct: 741 VHQAKETGYTETLYGRRRYLPELNSSNRVARENAERAALNAPIQGTAADIIKLAMLRVDR 800

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
           ++ +  L +++LLQ+HDELV EV + E+   S+++   M+ A      LRVPL+++    
Sbjct: 801 AIREQNLKSRVLLQVHDELVVEVAKGELDKVSELVQREMDAAA----RLRVPLEISAGHG 856

Query: 970 NNWQEE 975
            NW E 
Sbjct: 857 KNWDEA 862



 Score =  301 bits (770), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 118/497 (23%), Positives = 221/497 (44%), Gaps = 25/497 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M K   L L+DG S  +RAFYA P  +     G   NA+ GF  M   L++  +     +
Sbjct: 1   MTK-GKLLLLDGHSLAFRAFYALPAANFSTTGGQHTNAVYGFLGMFLGLMEKEQ----PT 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H A  FD    TFR E +P+YKA RP  P     Q+ L+R A +A GI  ++ + +EADD
Sbjct: 56  HVAAAFDLSGPTFREEHFPEYKAQRPSTPPEFKGQITLIRKALEALGITTLDKEAYEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           IIAT    A+K G    I + D+D +QLV+    +  T+K      +   E V KK+G+ 
Sbjct: 116 IIATLATEADKAGMETLICTGDRDSLQLVNDDITVLYTLKGVSDLHRFTPEAVEKKYGVT 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++   L AL GD+ DN+PG+PG+G KTA   + +YG+L+ ++     IK  K  E++ E
Sbjct: 176 PQQYPDLAALRGDTSDNMPGVPGVGPKTAQKWISQYGSLQGVIDVMDSIKG-KVGESLRE 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDC 294
           + ++ +L+R++  +  D+ +   L+ L  ++ +   ++   + L+F T L +R       
Sbjct: 235 HIDSVKLAREITEMVRDLDLVDDLDQLRPKEIDATEVLEMFEELQFGTNLRSRTFRILGV 294

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           +  +   + +     +    +   +     + +        ++ + ++ +    ++ L  
Sbjct: 295 EFEDTTVLPITREELDRGKFSQWVKKHTGGSSRALAVDIDGERLTVLDGDHVGVEMDLAD 354

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLET--IGSASFKIITDTMDAFHSKPIAIAIS 412
           L    +  I        +      +W    +      A   +  D ++  H   IA  + 
Sbjct: 355 LDPKDEKAI-----KTWLADPASPKWFHDAKRAFHALAPQGLELDGVE--HDASIAAYLL 407

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI-KY 471
             D +      +        +  + D   +    ++++  L +        ++ +++   
Sbjct: 408 RPDVRISGLGDILQSQAGRELPANADGFDRAQAVRDLVKVLTEKLAAAKQEELYYDLEVP 467

Query: 472 DKLVLHRY---GISMRG 485
             L+L R    GI++ G
Sbjct: 468 LCLILARMEHEGIAVDG 484


>gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
 gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
          Length = 873

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/493 (37%), Positives = 296/493 (60%), Gaps = 12/493 (2%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHA 542
             DI +M+Y+L+     ++   IA  ++  T +   +I+   K S  +    D  V+  A
Sbjct: 389 IHDIAIMAYLLNPLLQEYEYNDIANDFMGITVEGRSDIIGKNKVSSYLTDGFDKIVKLFA 448

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           +E + V    +     +L    +  VY  ++ P+I V+  ME  GI +++D LKQ   E+
Sbjct: 449 LE-AYVAFNSFDEAMKRLRETDMEKVYHDIELPVIYVLKSMEKYGIAVNKDALKQYGDEL 507

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           S  +  LE++IY  +G +FN++SPKQLG++LF KL  P G KTKTG   +T+ D+ +   
Sbjct: 508 SVKIKDLEQSIYKEAGTEFNINSPKQLGEVLFEKLNLPCGKKTKTGY--STSADVLEKLS 565

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D PI+ +ILE+R L+K+KSTYAD L  +I     R+H+ ++   T TGR++S EPNLQN
Sbjct: 566 ADYPIVDSILEYRTLAKLKSTYADGLAEYIVDG--RIHSTFNQTITATGRISSTEPNLQN 623

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IPI+ +LG+KIR+ F+       + ADYSQIELR+LAH++    L + +    DIH++ A
Sbjct: 624 IPIRMELGRKIRKVFVPEDGFIFMDADYSQIELRLLAHMSGDDTLIEAYNEDRDIHKITA 683

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           +++F   +++V+P+ R +AK +NF I+YGIS F L+  L I + EA +YI  YF+ +  +
Sbjct: 684 SKVFKTPLDEVTPRQRSNAKAVNFGIVYGISSFGLSRDLSISKKEAKEYIDEYFNTYKTL 743

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y++      ++NGY +TI+GRR    E++S     R   ER A+N+P+QG+AADI + 
Sbjct: 744 KNYLDNLVKSAKENGYTKTIYGRRRPVPELSSGNFMQRQFGERIAMNSPLQGTAADIIKI 803

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI+V+K L++ +L ++++LQIHDEL+ E    E     +I+   M  A      LRVPL
Sbjct: 804 AMINVYKRLKNERLESRLILQIHDELLIETKIGEEEQVRKILSEEMVNAA----TLRVPL 859

Query: 963 KVNIKVSNNWQEE 975
            ++I    +W E 
Sbjct: 860 AIDIHSGKDWYEA 872



 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 100/312 (32%), Positives = 165/312 (52%), Gaps = 11/312 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N+L L+DG S + RAFY  P+L+  H+G+  NAI GF N++ K +++ + +    H AV 
Sbjct: 2   NNLLLIDGHSIMNRAFYGIPMLTN-HEGIHTNAIYGFINIMLKAMEDEKSD----HIAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+++Y  YK  R  +P  L  Q+P+++    +  IP I ++G+EADDI+ T 
Sbjct: 57  FDLKAPTFRHKMYEMYKGTRKPMPAELHEQVPVIKEILASMNIPVITLEGYEADDILGTV 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKE----EKIDIEHVIKKWGIPPEK 178
              A+  G+ V I+S D+DL+QL      +    T+K     E    E V++K+   P +
Sbjct: 117 GKKAQSLGYNVVILSGDRDLLQLADEHIKIRLPKTIKGRTEIENYYPEDVMEKYMATPSE 176

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L+AL GDS DNIPG+PGIG KTA  ++ +Y ++EN   +   +   K + ++ E  +
Sbjct: 177 FIDLKALMGDSSDNIPGVPGIGEKTAMSIISKYHSIENAYEHVEELTPAKAKNSLRENYD 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A+LS+ L  + TD P+   +E   + +             E   L+     +       
Sbjct: 237 LAKLSKVLATIETDAPVEFNIEDSAIGNIFTKEAYELFTRYELKSLLKYFDKSSFEQKDI 296

Query: 299 IEPVVLDINTTE 310
            E +++  +  E
Sbjct: 297 PEEIIIIKDYFE 308


>gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
 gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 880

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 180/521 (34%), Positives = 293/521 (56%), Gaps = 22/521 (4%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS 514
           +  ++   K  H  K    +L   GI +RG   D  L +Y+L  G+ ++ +  ++Q+ L 
Sbjct: 375 WLSSDA-PKYLHEAKAAWHMLAGRGIELRGIAHDTALAAYLLRPGQRTYALTDVSQRHLQ 433

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +    L +    + I   +        ++ +  I++L   L  +L       +Y  L+ 
Sbjct: 434 KS----LGAATEQLSILDENP------LVDQAGAIMELAAELTAQLQEIDSFELYTDLEL 483

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDIL 633
           P++ +++QME  GI +D+D+L+       + +   E    +L+G+   NL+SPKQL  +L
Sbjct: 484 PLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPKQLQAVL 543

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F     P   KTKTG      +  +      +P + ++L  R+  K+K+T  + L   I 
Sbjct: 544 FDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTL-EGLIKTIQ 602

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQ 752
               R+HT ++   T TGRL+S EPNLQNIP++T+ G++IR AF+       LI+ADYSQ
Sbjct: 603 PDG-RIHTTFNQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFVVGEGYETLITADYSQ 661

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IE+R++AH++    L + +    D+H  V +++F V +++V+P++RR  K +++ ++YG+
Sbjct: 662 IEMRVMAHLSADPGLIEAYREGEDLHNYVGSKVFDVPVDEVTPELRRRVKAMSYGLVYGL 721

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL IP  EA + ++ YF RF G+  Y+++     R++GY  T+FGRR +  E+
Sbjct: 722 SAFGLSQQLGIPAREAKEIMESYFERFGGVKRYLDEVVVQARKDGYTSTVFGRRRYLPEL 781

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           NS     R   ERAA+NAPIQG+AADI + AMI V K+LE   LA+++LLQ+HDELV EV
Sbjct: 782 NSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDKALEA--LASRVLLQVHDELVVEV 839

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              E     +I+   M+KA    I L VPL+V++ V  NW 
Sbjct: 840 APGEAEDVQRILEREMDKA----IELTVPLEVSVGVGKNWD 876



 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 147/291 (50%), Gaps = 11/291 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  L L+DG S  +RAFYA P  +     G   NA+ GF +ML  +L   + +     
Sbjct: 3   TSQPRLLLIDGHSMAFRAFYALPAENFSTSGGQHTNAVYGFLSMLANILAEEKPDF---- 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR +++P+YKA R   PE    Q+ L+R   +  GI  +  + FEADDI
Sbjct: 59  VAVAFDVGRKTFRTDMFPEYKAQREAAPEEFRGQVELIRDVLETLGITTLSRENFEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           +AT +  A  + +   +++ D+D +QLV  +T +   ++      +   E V +K+G+ P
Sbjct: 119 VATLSTQAGAD-YQTFLVTGDRDYLQLVDDSTTVLYPMRGVSKLHRFTPEAVKEKYGLSP 177

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+     AL GD  DN+P +P +G KTA   + +YG+L+ ++ +A  IK     +N  + 
Sbjct: 178 EQYPDFAALRGDPSDNLPSVPKVGEKTATKWITQYGSLDALIEHAEEIKG-VAGQNFRDR 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            E  +L+R+L  + TD+ + +    L  +      + +    LEF   +  
Sbjct: 237 IEQVKLNRQLTQMVTDMDLEVGPADLEFKGAVASEVAARFDELEFGTNLRE 287


>gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 857

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/540 (35%), Positives = 296/540 (54%), Gaps = 29/540 (5%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVL 496
           D    +     I +YL++  +      I  + K    VL R G     F  D++L +Y+L
Sbjct: 344 DGQVVHLSAPHIPAYLERLPQAAQI--ITADGKRLYKVL-RTGKRPAPFPADVVLGAYLL 400

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           D  R+S+ ++ +A +                   +              +    Q+W   
Sbjct: 401 DPTRTSYALSYLATR------------------FEVPLPEGAAPSVCAEALFAAQVWEKE 442

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
              L    L  +YER++ P++  +S ME  G  +D   L+ +   ++    +LE  IY+ 
Sbjct: 443 EAALQQFGLTDLYERIEAPLLYTLSVMETNGFTVDTARLQAMKTALTAQAAALENEIYEA 502

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
           +G  FN++SPKQLG +LF  L  P   KTKTG + T A+ LE +    +P ++ I+ +R 
Sbjct: 503 AGAAFNINSPKQLGHMLFEVLHLPVRKKTKTG-YSTDAEVLESLR-DAHPAVEKIVRFRA 560

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L K+ STY D L   I   T RV+T +    T TGRL+S +PNLQNIPI+T+ G+KIR  
Sbjct: 561 LKKLISTYLDGLEPLIVPATGRVYTSFHQTVTATGRLSSSDPNLQNIPIRTEQGKKIRSL 620

Query: 737 FISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           F+       ++S DYSQIELR+LAH+++   +   F+ + DIHR  A+E+F +  E+V+P
Sbjct: 621 FVPGKGYDYILSGDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWEQVTP 680

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + R HAK +NF IIYGIS F LA  + I R++A  YI+ YF R+  IH Y+E+     ++
Sbjct: 681 EERSHAKAVNFGIIYGISDFGLARNIGISRAQAKQYIESYFARYSTIHGYMEELVRQAKE 740

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            G   T+FGR     +INS   + R++ ER A+N PIQGSAADI + AM +V + LE  +
Sbjct: 741 TGITRTMFGRMRTLTDINSKNFTRRSLAERMAMNTPIQGSAADIIKLAMNAVQRELEQRQ 800

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L +++L+Q+HDELV EVP +E+     ++  +ME+A    + L VPL  ++    NW+E 
Sbjct: 801 LRSRLLVQVHDELVLEVPADELELVKTLLKRTMEEA----VTLSVPLIADLHYGKNWEEA 856



 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 106/291 (36%), Positives = 163/291 (56%), Gaps = 10/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L ++DGSS +YRAFYA P L+    G   NA+ GF NML KL +    E    + AV
Sbjct: 2   KEKLVIIDGSSLLYRAFYAIPTLT-DSQGRYTNAVYGFLNMLLKLYE----ELDPHYVAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+ +Y DYKA R   PE L PQ  L+R   +  GI  +E +G+E DDI+ T
Sbjct: 57  AFDKDKHTFRHTLYTDYKATRKPAPEELRPQFALIREVLECLGIHVLEKEGYEGDDILGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
               ++  G  V +++ D+D +QL      +Y T K     + +  E +++++G  P ++
Sbjct: 117 VARQSQAAGLEVAVVTGDRDALQLADRAITVYLTKKGITHMQAVTPEVMVREYGYTPAQV 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+PG+G KTA  L+QE+G ++ +    S +K  K RE + +Y E+
Sbjct: 177 IDMKALMGDTADNIPGVPGVGEKTALKLIQEFGGVDGVYARLSEVKGVKLREKLQQYRES 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           A LS++L  +  DVP+T   E   L       + +  + L F +L+ R A 
Sbjct: 237 AMLSKQLAAICCDVPLTYTKETF-LPQPREEEVRALFQQLGFRQLLTRFAA 286


>gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
 gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
          Length = 431

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/437 (43%), Positives = 266/437 (60%), Gaps = 9/437 (2%)

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           H       I  L   L  +L  +    ++ +++ P+  ++  MEITGI++D   LK++  
Sbjct: 1   HLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQV 60

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           E S+ L  +EE IY  +GE+FNL+SPKQLG ILF K+  P   KTKTG   +TA D+ + 
Sbjct: 61  EFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPVIKKTKTGY--STAVDVLEQ 118

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                PI+ +IL +RQ++KI+STY + L   I    + +HT Y    T TGRL+S++PNL
Sbjct: 119 LKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNK-IHTRYVQTLTQTGRLSSVDPNL 177

Query: 721 QNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIPI+ + G+KIR AF+       + S+DYSQIELR+LAHI+    L + F    DIH 
Sbjct: 178 QNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDIHA 237

Query: 780 MVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             A  +FGV   E V+P MRR AK +NF I+YGIS + L+  L I R +A  YI  YF +
Sbjct: 238 STAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYFEK 297

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PG+ +Y+E+     +  GYVET++ RR +  +INS   ++R+  ER AIN PIQGSAAD
Sbjct: 298 YPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSAAD 357

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I + AMI + + L++ KL   MLLQ+HDELVFEVPE E+   +Q++   ME A    ++L
Sbjct: 358 ILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQLNQLVKEVMEHA----VSL 413

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPL  +      W E 
Sbjct: 414 HVPLITDSSWGKTWYEA 430


>gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
 gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
          Length = 902

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 173/530 (32%), Positives = 288/530 (54%), Gaps = 13/530 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           + L  +F +    K+GH++K     L   G  + G   D  L +Y+   G+ + D+  + 
Sbjct: 375 AALAAWFADPTPTKVGHDLKTAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGDLV 434

Query: 510 QKWLSYTRK-EILKSRKSSIPI----DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           Q++L  T   E   +    + +    ++ + ++     +  +  I+ L   L   L    
Sbjct: 435 QRYLHRTLDPEHSTNAGQQLSLIPEENEGAQTEQDSRDMVRARAIIDLAEALEQHLDSLG 494

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              +   ++ P++ V+ +ME  GI +D D L  + +  +  + S  +  Y   G + NL 
Sbjct: 495 QKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEIGREVNLG 554

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQL  +LF +L  P   +TKTG        +       +P + ++L  R ++++K T 
Sbjct: 555 SPKQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHRDVTRLKVT- 613

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-K 743
            + L   +     R+HT +      TGRL+S EPNLQNIPI+TD G+ IRRAF+  P   
Sbjct: 614 VEGLRKSVGDDG-RIHTTFQQTVAATGRLSSTEPNLQNIPIRTDEGRLIRRAFVPGPQAD 672

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L++ADYSQIE+RI+A +++   L + F +  D+H  VA + FG+  E+V+P++RR  K 
Sbjct: 673 LLLTADYSQIEMRIMATLSEDEGLIEAFRSGEDLHTFVAMKAFGLPAEQVTPELRRRIKA 732

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +++ + YG+S + L+ QL+I   EA + ++ YF RF G+ +Y+  T    R++GY ETIF
Sbjct: 733 MSYGLAYGLSAYGLSGQLKISVDEAKEQMEAYFSRFGGVRDYLRDTVARARKDGYTETIF 792

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR +  ++NS     R + ER A+NAPIQGSAAD+ + AM++V + +    L ++MLLQ
Sbjct: 793 GRRRYVPDLNSDNRQKRAMAERIALNAPIQGSAADVIKVAMVNVQRRIRAEGLRSRMLLQ 852

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +HDELV EV  +E+   ++++   M  A      L VPL+V++    NW 
Sbjct: 853 VHDELVCEVVADELAVMTELLKQEMGGA----YPLAVPLEVSVGSGANWD 898



 Score =  299 bits (766), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 141/293 (48%), Gaps = 11/293 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAFYA P  +     G   NA+ GF +ML  LL++ +     +H AV F
Sbjct: 13  LLLMDGHSLAYRAFYALPPENFSTTTGQTTNAVYGFTSMLINLLRDEQ----PTHVAVAF 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    T+R E + DYKANR   P     Q+ L++    A  IP +  + +EADDIIAT  
Sbjct: 69  DLSRQTWRREEFVDYKANRSASPSEFAGQIDLIKEVLTAMRIPYLTAENYEADDIIATLA 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVC 181
             A  EG  V I + D+D +QLVS    L    +      +     V  K+G+ P +   
Sbjct: 129 TRAVAEGLNVRICTGDRDALQLVSDQVTLLYLQRGVSEMARYTPAAVEAKYGLTPLQYPD 188

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+PGIPG+G KTA   ++E+G+L  ++     ++  K  + + E      
Sbjct: 189 FAALRGDPSDNLPGIPGVGEKTATKWIREFGSLTALVDRVDEVRG-KAGDALREALPHVL 247

Query: 242 LSRKLVMLRTDVPITIPLE-HLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            +R+L  L  +VP+       L     +   +      L+F  L  R+   ++
Sbjct: 248 TNRRLTELVREVPVDADPATDLERLPYDREAVHHIFDDLQFRVLRERLLDYFE 300


>gi|309801255|ref|ZP_07695384.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222144|gb|EFO78427.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 727

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 186/748 (24%), Positives = 327/748 (43%), Gaps = 65/748 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++     +    H AV FD
Sbjct: 1   MVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDTEHPD----HLAVAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFRN + P YK  R   PE LL QLPL++    A G+  IE  G+E DD+I T   
Sbjct: 57  VKGGTFRNMMLPQYKGTRDAAPEDLLSQLPLIQRMLSALGVTYIEQPGYEGDDVIGTLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           + +K G+   ++S D+D  QL++    +          + +  + V++K+ + PE+   L
Sbjct: 117 MGDKAGYRTLVLSGDRDAFQLINDNITVLYPGHHFKDLKHMTSDAVVEKYHVTPEQYPDL 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL G++ DNIPG+PG+G   AA  + +YG L+ I+ +A  I  KK  E + E  E  +L
Sbjct: 177 AALRGETADNIPGVPGVGDGFAAKWINQYGGLDQIIEHADEITGKK-GEALRENIEQVKL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANIEP 301
           +R +  L  D+ + + L+ L     +  RL      LEF  +  NRV  T++        
Sbjct: 236 NRSVNALVRDLELDVTLDDLTFGTVDTARLNDLFSKLEFGIRTRNRVLKTFNAGTTTA-- 293

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
                      G+ ++ E +R    +    +   +  + +++   P    L    + +  
Sbjct: 294 -----------GVTVQPESNRVVLPEVMTITHGDELRTWVDANMPPADEHLHGDDEDANP 342

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I+  S   I NT                                 A+  S + Q +  +
Sbjct: 343 AIDAGS--LIGNTMTCTN----------------------------AVNHSWVLQAEGVA 372

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                    L +  +        +   I + L+   +  H   + H  K  + +L   GI
Sbjct: 373 KPGNASMASLMLMVNGKGAQIEHVDDSIANELQHMLDGYHRSMVVHGYKEQQHLLESVGI 432

Query: 482 SMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-ILKSRKSSIPIDKIS--DSQ 537
           ++     D  L  Y++     +  +   A  +L    +E   ++ + ++ +D +    + 
Sbjct: 433 TLPTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLDLDDMDGSSNT 492

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             +    ++ ++  L  +L   L       + + ++ P+  V+  ME  G Q+D   L +
Sbjct: 493 QADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAGAQVDMIRLTE 552

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +  + + +    +E  ++ +GE+ NL SPKQL  ILF  +      KTK+G + T A  L
Sbjct: 553 MRDQFAADARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKSGSYTTNAAAL 612

Query: 658 EQINCG------DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           + +          N  +  +L  R+ +K+K     +L +  N R  R+HT +      TG
Sbjct: 613 QTLYEHSLDNDRANQFLGALLRHRETNKLK-QIVQTLIDATNPRDGRIHTTFEQTVAATG 671

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           RL+S++PNLQNIP +   G++IR AF+ 
Sbjct: 672 RLSSVDPNLQNIPNRNAAGREIRSAFVP 699


>gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 835

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/521 (34%), Positives = 293/521 (56%), Gaps = 22/521 (4%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS 514
           +  ++   K  H  K    +L   GI +RG   D  L +Y+L  G+ ++ +  ++Q+ L 
Sbjct: 330 WLSSDA-PKYLHEAKAAWHMLAGRGIELRGIAHDTALAAYLLRPGQRTYALTDVSQRHLQ 388

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +    L +    + I   +        ++ +  I++L   L  +L       +Y  L+ 
Sbjct: 389 KS----LGAATEQLSILDENP------LVDQAGAIMELAAELTAQLQEIDSFELYTDLEL 438

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDIL 633
           P++ +++QME  GI +D+D+L+       + +   E    +L+G+   NL+SPKQL  +L
Sbjct: 439 PLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPKQLQAVL 498

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F     P   KTKTG      +  +      +P + ++L  R+  K+K+T  + L   I 
Sbjct: 499 FDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTL-EGLIKTIQ 557

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQ 752
               R+HT ++   T TGRL+S EPNLQNIP++T+ G++IR AF+       LI+ADYSQ
Sbjct: 558 PDG-RIHTTFNQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFVVGEGYETLITADYSQ 616

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IE+R++AH++    L + +    D+H  V +++F V +++V+P++RR  K +++ ++YG+
Sbjct: 617 IEMRVMAHLSADPGLIEAYREGEDLHNYVGSKVFDVPVDEVTPELRRRVKAMSYGLVYGL 676

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL IP  EA + ++ YF RF G+  Y+++     R++GY  T+FGRR +  E+
Sbjct: 677 SAFGLSQQLGIPAREAKEIMESYFERFGGVKRYLDEVVVQARKDGYTSTVFGRRRYLPEL 736

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           NS     R   ERAA+NAPIQG+AADI + AMI V K+LE   LA+++LLQ+HDELV EV
Sbjct: 737 NSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDKALEA--LASRVLLQVHDELVVEV 794

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              E     +I+   M+KA    I L VPL+V++ V  NW 
Sbjct: 795 APGEAEDVQRILEREMDKA----IELTVPLEVSVGVGKNWD 831



 Score =  237 bits (605), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 10/248 (4%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML  +L   + +      AV FD    TFR +++P+YKA R   PE    Q+ L+R   +
Sbjct: 1   MLANILAEEKPDF----VAVAFDVGRKTFRTDMFPEYKAQREAAPEEFRGQVELIRDVLE 56

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--- 160
             GI  +  + FEADDI+AT +  A  + +   +++ D+D +QLV  +T +   ++    
Sbjct: 57  TLGITTLSRENFEADDIVATLSTQAGAD-YQTFLVTGDRDYLQLVDDSTTVLYPMRGVSK 115

Query: 161 -EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
             +   E V +K+G+ PE+     AL GD  DN+P +P +G KTA   + +YG+L+ ++ 
Sbjct: 116 LHRFTPEAVKEKYGLSPEQYPDFAALRGDPSDNLPSVPKVGEKTATKWITQYGSLDALIE 175

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
           +A  IK     +N  +  E  +L+R+L  + TD+ + +    L  +      + +    L
Sbjct: 176 HAEEIKG-VAGQNFRDRIEQVKLNRQLTQMVTDMDLEVGPADLEFKGAVASEVAARFDEL 234

Query: 280 EFTKLINR 287
           EF   +  
Sbjct: 235 EFGTNLRE 242


>gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
 gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
          Length = 839

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 186/566 (32%), Positives = 302/566 (53%), Gaps = 34/566 (6%)

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI-GHNIK 470
           +    +      V      +     Q +   +    E  +   +  E E F ++     K
Sbjct: 305 AWPPPERAWLGYVFDRPEPMWAELGQLAAAWDERVAEGPA---RALELERFPQLDAVQAK 361

Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
              +   R G+  R  +D +L++Y+ D   +                       + +  +
Sbjct: 362 DLTVWALREGVRARPGDDPLLLAYLYDPSNN-----------------------QPASTV 398

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            +       + A + +     LW  +  +L   E+L  +Y  +++P+  V++ ME  G++
Sbjct: 399 RRYGVGDWTDRARDRALAARWLWREMSDRLEGEERLWWLYREVERPLQGVLAAMERRGVK 458

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D D L  +S E++  L  LE  I+ L+G  FNL+S  QL  +L+ +L   +G +T    
Sbjct: 459 LDVDYLLALSQELAAELERLEAEIHRLAGHPFNLNSRDQLETVLYDELGLAAGRRTAKTG 518

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            ++T+  + +   G +PI++ IL++R+L+K+K TY D LP  ++ RT R+HT +    T 
Sbjct: 519 KRSTSASVLETLRGAHPIVEKILQYRELAKLKGTYLDPLPKLVHPRTGRLHTRFHQTGTA 578

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIPI+T++G++IR+ F++     L+ ADYSQIELR+LAH++    L +
Sbjct: 579 TGRLSSSDPNLQNIPIRTEIGRRIRKGFVAGEGYLLVVADYSQIELRVLAHLSGDENLIR 638

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           +F+   DIH   AA +FGV   +V P  RR AKTINF ++YG+S  RL+ +L I   EA 
Sbjct: 639 IFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAAKTINFGVLYGMSAHRLSRELGIDYGEAQ 698

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            +I RYF  +PG+  ++E+     R+ GYVET+FGRR H  E+ S   ++R   ER A N
Sbjct: 699 AFIDRYFDSYPGVRAFMERVLEEARERGYVETLFGRRRHVPELLSKARNVREAAERVAFN 758

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            P+QG+AAD+ + AM+ +   L    L   +LLQ+HDELV E PEE     ++++  +ME
Sbjct: 759 MPVQGTAADLIKLAMVKLAPRL--EPLGAALLLQVHDELVVEAPEERAAETARVVKATME 816

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
           +A      L VPL V + V  +W E 
Sbjct: 817 EA----WRLDVPLAVEVGVGRDWLEA 838



 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 107/367 (29%), Positives = 174/367 (47%), Gaps = 15/367 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPL-LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            K   + LVDG    +R++YA          G PV+A+ GF   L KLL+          
Sbjct: 12  SKPERIVLVDGHHLAFRSYYALKDAGLSTSSGEPVHAVYGFARTLLKLLREDG-----DC 66

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD P  +FR+E +  YKA R   PE   PQ+  ++      G+  +E+ G EADD+
Sbjct: 67  VIVVFDAPGPSFRHEEFAGYKAQRVAPPEDFKPQVEKIKQLVDLLGLVRLEVPGVEADDV 126

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           +AT    AE+EG+ V I+++D+D  QL++    +  T  E +I  +++ +K+G+ PE+ V
Sbjct: 127 LATLARRAEREGYEVVILTSDRDTYQLLTDRVVV-VTPDERRITPDYLRQKYGVGPEQWV 185

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +ALTGD  DNIPG+ G+G KTAA LL  +G+L+ I  +   +     R+ + E  E A
Sbjct: 186 DYRALTGDPSDNIPGVRGVGAKTAAKLLARWGSLDRIYEHLDEVTPPGVRKKLEEGREAA 245

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
             SR++  +R DVP+ + L      + +   L  FL  LEF  L+  +      +A    
Sbjct: 246 FFSREISRMRADVPLDVDLTGCHRNEVDREGLRRFLLDLEFGTLLRELGLIQAPEAQEAA 305

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
               +              +        ++   L+    +  +E   + L LER  +L  
Sbjct: 306 WPPPERAWLGY--------VFDRPEPMWAELGQLAAAWDERVAEGPARALELERFPQLDA 357

Query: 361 YPINNDS 367
               + +
Sbjct: 358 VQAKDLT 364


>gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 416

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 184/418 (44%), Positives = 278/418 (66%), Gaps = 8/418 (1%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +L   + L +Y ++++P+  V++ MEI G+++D + L+ + +E+ + L  LE+ IY+ +G
Sbjct: 3   ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG 62

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E+FNL+SPKQLG ILF KLK P   KTKTG   +TA  + +   G +PI+ NIL++RQL+
Sbjct: 63  EEFNLNSPKQLGVILFEKLKLPVIKKTKTGY--STAVGVLEQLRGMSPIVDNILQYRQLA 120

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           KI+STY + L   ++K+  + HT Y+   T TGRL+S++PNLQNIP++ + G+KIR+AF+
Sbjct: 121 KIQSTYIEGLLKVVSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFV 180

Query: 739 SP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQ 796
              P  ++ S+DYSQIELR+LAHI+K   + + F+  +DIH   A  IF V+  ++V+P 
Sbjct: 181 PSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPDEVTPN 240

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           MRR AK +NF I+YGIS + L+  + I R +A  +I  Y   F G+ +Y+EK   F ++N
Sbjct: 241 MRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYMEKIVEFAKEN 300

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           GYVETIF RR +  +I S   ++R+  ER A+N+PIQGSAADI + AMI++ + L++  L
Sbjct: 301 GYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINMQEMLKEKNL 360

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             KMLLQ+HDEL+FE P +EI     ++   M+ A    + L VPLKV  K    W +
Sbjct: 361 QAKMLLQVHDELIFEAPTKEIPLLEDMVPKVMDSA----VKLDVPLKVESKHGQTWFD 414


>gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987]
 gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A]
 gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85]
 gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210]
 gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
          Length = 904

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/515 (33%), Positives = 284/515 (55%), Gaps = 9/515 (1%)

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKE 519
             K  H  K     L   G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E
Sbjct: 392 KPKALHEAKAAVHDLAGRGWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE 451

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
             + ++ S+  D  +D++  +  I  +  ++ L   L  +L       +   ++ P+  V
Sbjct: 452 TPQQQQLSLLDDDDTDAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRV 511

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME  GI +D  +L ++ ++    +    E  Y + G++ NL SPKQL  +LF +L  
Sbjct: 512 LAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGM 571

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   +TKTG            +   +P ++++L  R ++++K T  D L   +     R+
Sbjct: 572 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADG-RI 629

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRIL 758
           HT ++     TGRL+S EPNLQNIPI+TD G++IR AF+      +L++ADYSQIE+RI+
Sbjct: 630 HTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIM 689

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L + F    D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+
Sbjct: 690 AHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLS 749

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL+I   EA + +  YF RF G+ +Y+       R++GY  T+ GRR +  E++S    
Sbjct: 750 QQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQ 809

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R   ERAA+NAPIQGSAADI + AMI V K+L + +LA++MLLQ+HDEL+FE+   E  
Sbjct: 810 VREAAERAALNAPIQGSAADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERE 869

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
               ++   M  A      L VPL+V++    +W 
Sbjct: 870 RVEALVRDKMGGA----YPLDVPLEVSVGYGRSWD 900



 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 157/308 (50%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H A
Sbjct: 14  KPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTHIA 69

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IA
Sbjct: 70  AAFDVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIA 129

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+PP +
Sbjct: 130 TLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLPPGQ 189

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++  K  + +     
Sbjct: 190 YPDFAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRG-KVGDALRANLA 248

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +   +R+L  L  DVP+    + L L+  +   +      LEF  L +R+  T       
Sbjct: 249 SVVRNRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFDTLAAAGGP 308

Query: 299 IEPVVLDI 306
                 D+
Sbjct: 309 EVDEGFDV 316


>gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411]
 gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411]
          Length = 859

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/526 (32%), Positives = 280/526 (53%), Gaps = 28/526 (5%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
             L ++  N    K  H+ K     L   G+++ G   D  L +Y+L     +  +A + 
Sbjct: 355 KALAEWLANPQATKWLHDSKKAYHTLQNQGLTLDGVEHDTSLAAYLLRPDVRTLSLADVV 414

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           Q+ + +   E                        E +  + +L   L P++       +Y
Sbjct: 415 QRHVGHELSEGATGP-------------------ERAQAVAELVKALTPEIEAAGQAELY 455

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQ 628
             L+ P+  +++ ME  GI +D   L+++S +    L        +L+GE + NLSSPKQ
Sbjct: 456 FDLEVPLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAARELAGEPELNLSSPKQ 515

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           L  +LF     P   KTKTG     A+  +     ++P + +++  R+  K+KST  D L
Sbjct: 516 LQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHREYQKMKST-IDGL 574

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLIS 747
              +     R+HT ++     TGRL+S +PNLQNIP++TD G+KIR AF        L++
Sbjct: 575 IEAVGDDG-RIHTTFNQKGAATGRLSSSDPNLQNIPVRTDAGRKIRAAFTVGEGYETLLT 633

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIE+R++AH+++   L + + +  D+H  V + +F V +++V+P++RR  K +++ 
Sbjct: 634 ADYSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYG 693

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+S F L+ QL+I   EA   +  YF RF G+  Y++      ++ GY ET++GRR 
Sbjct: 694 LVYGLSAFGLSQQLKISAWEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGRRR 753

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  E+NS     R   ERAA+NAPIQG+AADI + AM+ V + +   +LA+++LLQ+HDE
Sbjct: 754 YLPELNSSNRVARENAERAALNAPIQGTAADIIKLAMLRVDREITRQQLASRVLLQVHDE 813

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           LV EV   E+   ++++   M+ A      LRVPL V+    +NW 
Sbjct: 814 LVVEVAPGELEQITELVEREMDAAA----QLRVPLDVSAGTGDNWD 855



 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 199/467 (42%), Gaps = 24/467 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  +RAFYA P  +     G   NA+ GF  M   L+   +     +H A  
Sbjct: 3   KLLLLDGHSLAFRAFYALPAANFSTVGGQHTNAVYGFLGMFLTLMDKEQ----PTHVAAA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E +P+YKA RP  PE    Q+ L+R   +A G+  ++ + +EADDIIAT 
Sbjct: 59  FDLSGPTFREESFPEYKAQRPSTPEEFKGQIELIRRTLEALGVTTLDKESYEADDIIATL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
                K+G  V I + D+D +QLV+    +  T+K      +   + V +K+G+ P +  
Sbjct: 119 ATEGAKDGMDVLICTGDRDSLQLVTEDVTVLYTLKGVSELHRFTPQAVEEKYGVTPTQYP 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GD+ DN+PG+PG+G KTA   + +YG+L+ ++ N   I   K   N+ E  +  
Sbjct: 179 DLAALRGDTSDNMPGVPGVGPKTAQKWIAKYGSLQGVIDNMDDI-GGKVGANLRENIDNV 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK-LINRVATTYDCDAANI 299
            L+R +  +  D+ +   L+ L   D +    +   + L+F   L NR       + A+ 
Sbjct: 238 VLARDITEMVRDLKLVDDLDALSPHDIDPNEALGMFEELQFGTGLRNRAFKIMGVEFADS 297

Query: 300 EPVVLDINTTEN-----------KGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
             V + +   +            +G  ++ + ++ T +       + D       ++   
Sbjct: 298 AAVPVTVEKPKPGKLGAWLKKRTRGTVVDVDGEQLTLLDRDNVVIVQDLADVAPKDEKAL 357

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF--KIITDTMDAFHSKP 406
             +L   Q       +  +Y  + N       V+   ++ +      + T ++     + 
Sbjct: 358 AEWLANPQATKWLHDSKKAYHTLQNQGLTLDGVEHDTSLAAYLLRPDVRTLSLADVVQRH 417

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +   +S      + +  V  +   L+         +     E+   L
Sbjct: 418 VGHELSEGATGPERAQAVAELVKALTPEIEAAGQAELYFDLEVPLAL 464


>gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97]
 gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11]
 gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503]
 gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A]
 gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85]
 gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207]
 gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506]
 gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475]
 gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I
 gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I
 gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv]
 gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97]
 gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11]
 gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
 gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
 gi|740010|prf||2004291B DNA polymerase I
          Length = 904

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/515 (33%), Positives = 284/515 (55%), Gaps = 9/515 (1%)

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKE 519
             K  H  K     L   G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E
Sbjct: 392 KPKALHEAKAAVHDLAGRGWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE 451

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
             + ++ S+  D  +D++  +  I  +  ++ L   L  +L       +   ++ P+  V
Sbjct: 452 TPQQQQLSLLDDDDTDAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRV 511

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME  GI +D  +L ++ ++    +    E  Y + G++ NL SPKQL  +LF +L  
Sbjct: 512 LAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGM 571

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   +TKTG            +   +P ++++L  R ++++K T  D L   +     R+
Sbjct: 572 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADG-RI 629

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRIL 758
           HT ++     TGRL+S EPNLQNIPI+TD G++IR AF+      +L++ADYSQIE+RI+
Sbjct: 630 HTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIM 689

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L + F    D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+
Sbjct: 690 AHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLS 749

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL+I   EA + +  YF RF G+ +Y+       R++GY  T+ GRR +  E++S    
Sbjct: 750 QQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQ 809

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R   ERAA+NAPIQGSAADI + AMI V K+L + +LA++MLLQ+HDEL+FE+   E  
Sbjct: 810 VREAAERAALNAPIQGSAADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERE 869

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
               ++   M  A      L VPL+V++    +W 
Sbjct: 870 RVEALVRDKMGGA----YPLDVPLEVSVGYGRSWD 900



 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 156/308 (50%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H A
Sbjct: 14  KPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTHIA 69

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IA
Sbjct: 70  AAFDVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIA 129

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P +
Sbjct: 130 TLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQ 189

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++  K  + +     
Sbjct: 190 YPDFAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRG-KVGDALRANLA 248

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +   +R+L  L  DVP+    + L L+  +   +      LEF  L +R+  T       
Sbjct: 249 SVVRNRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFDTLAAAGGP 308

Query: 299 IEPVVLDI 306
                 D+
Sbjct: 309 EVDEGFDV 316


>gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
 gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
          Length = 903

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/515 (33%), Positives = 284/515 (55%), Gaps = 9/515 (1%)

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKE 519
             K  H  K     L   G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E
Sbjct: 391 KPKALHEAKAAVHDLAGRGWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE 450

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
             + ++ S+  D  +D++  +  I  +  ++ L   L  +L       +   ++ P+  V
Sbjct: 451 TPQQQQLSLLDDDDTDAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRV 510

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME  GI +D  +L ++ ++    +    E  Y + G++ NL SPKQL  +LF +L  
Sbjct: 511 LAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGM 570

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   +TKTG            +   +P ++++L  R ++++K T  D L   +     R+
Sbjct: 571 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADG-RI 628

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRIL 758
           HT ++     TGRL+S EPNLQNIPI+TD G++IR AF+      +L++ADYSQIE+RI+
Sbjct: 629 HTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIM 688

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L + F    D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+
Sbjct: 689 AHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLS 748

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL+I   EA + +  YF RF G+ +Y+       R++GY  T+ GRR +  E++S    
Sbjct: 749 QQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQ 808

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R   ERAA+NAPIQGSAADI + AMI V K+L + +LA++MLLQ+HDEL+FE+   E  
Sbjct: 809 VREAAERAALNAPIQGSAADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERE 868

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
               ++   M  A      L VPL+V++    +W 
Sbjct: 869 RVEALVRDKMGGA----YPLDVPLEVSVGYGRSWD 899



 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 156/308 (50%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H A
Sbjct: 13  KPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTHIA 68

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IA
Sbjct: 69  AAFDVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIA 128

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P +
Sbjct: 129 TLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQ 188

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++  K  + +     
Sbjct: 189 YPDFAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRG-KVGDALRANLA 247

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +   +R+L  L  DVP+    + L L+  +   +      LEF  L +R+  T       
Sbjct: 248 SVVRNRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFDTLAAAGGP 307

Query: 299 IEPVVLDI 306
                 D+
Sbjct: 308 EVDEGFDV 315


>gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 838

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 177/518 (34%), Positives = 304/518 (58%), Gaps = 31/518 (5%)

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           +   +E  LKI +N K     L   G+ +   + D+M+++Y+++  R  ++I  +  ++ 
Sbjct: 348 EILSSE-ILKIIYNAKEALKKLKNSGLKLSPPYFDLMIVAYLINPNRGKYNIDELILEYT 406

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
                                  +  E+A   +  + +L+  L  +L  ++L ++Y  ++
Sbjct: 407 G----------------------KFYENAENINFYMFELYEKLNKELKEKELENLYFDIE 444

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+I+V+  ME TGI+++ + L+ ++  IS  L  ++E IY ++G +FN++SPKQL ++L
Sbjct: 445 MPLIEVLFDMEETGIKVNIEKLETLTKHISMELDKIKEKIYTIAGTEFNINSPKQLAEVL 504

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           + +L   +  + K  + ++T  ++ +     + +   ++ +R L+K+ + Y   L ++IN
Sbjct: 505 YDRLGLKTRKRGK--KARSTEMEVLEELAIQHELPHEVINYRTLNKLLTGYLIPLRDYIN 562

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             T+R+HT +S     TGR+ S EPNLQNIP+K +  + +R  FI       +SADYSQI
Sbjct: 563 PETKRIHTKWSQTVAGTGRIVSSEPNLQNIPVKGEWAEFLREVFIPENGYMFLSADYSQI 622

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR+LAH+++   L + F +  DIH   A+EIF +    V+ + RR AKT+NF I YGIS
Sbjct: 623 ELRLLAHMSEDPALIKAFLDGKDIHTATASEIFSIPENAVTDEHRRIAKTVNFGISYGIS 682

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
           PF L+  ++IP  +A + I+ YF R+P + ++IE+T +F ++NGYV T+FGR     EIN
Sbjct: 683 PFGLSESIKIPYEKAEELIELYFLRYPMVRKFIEETISFAQKNGYVRTLFGRIRPLPEIN 742

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           SP   +R  +ER A+NA +QG+AADI + AMI ++  L+  KL  K++LQIHDE+V EV 
Sbjct: 743 SPNQFLRMQSERMAVNARVQGTAADIIKIAMIRIYNRLKKEKLNAKIILQIHDEIVLEVE 802

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           ++ I   S+I+ + M+       +L VPL+VN+   N+
Sbjct: 803 QKVIEKVSEIVQNEMK-----DFSLSVPLEVNVFSGNS 835



 Score =  306 bits (783), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 125/287 (43%), Positives = 177/287 (61%), Gaps = 6/287 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++LVDGS FIYRA++A   LS    G+P NAI GF  ML KLL+    E    +    FD
Sbjct: 4   IYLVDGSCFIYRAYHAIKGLSTSR-GIPTNAIYGFTRMLLKLLR----EKNVKYILCAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
            P  T R++IY +YK  RP+ P+ L  Q+  ++    A GI  IE+ G+EADDIIAT   
Sbjct: 59  SPHPTKRHKIYEEYKITRPETPKDLPVQIDYIKQIIDALGITRIEVPGYEADDIIATAVG 118

Query: 127 IAEK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           +  +       IIS DKD++QLVS    +YD + E  ID E+VIKK+G+PPEK+    AL
Sbjct: 119 VINQFAPLNFIIISIDKDMLQLVSDNVKIYDPINELIIDREYVIKKYGVPPEKLNDFMAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD+IDNIPG+ GIG KTAA L++ YG++ENIL N   IK  K  + I +  ++ +LS++
Sbjct: 179 VGDAIDNIPGVKGIGEKTAANLIKRYGSIENILKNLDIIKPLKVSDIIKKNIKSLQLSKE 238

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           LV+LR D PI I L+ L ++  +  +L+   + LEF  L+ ++   +
Sbjct: 239 LVILRKDTPIEIKLDDLKIKQQDREKLVQIFRELEFNTLLKQIIKDF 285


>gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a]
          Length = 829

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 181/625 (28%), Positives = 315/625 (50%), Gaps = 49/625 (7%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L        ++    K+++  ++ + +QKL+   +++              P     + 
Sbjct: 252 ELSHYVPKERDDTELAKLLSELEMYKMLQKLKLHPTSA--------------PAGSKEAL 297

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +        +    I ++   S  +    T  K     LK +  +    K   +IK   
Sbjct: 298 EESAAKQIPAMPAGNIVMTQEGSVYAGTVGTPVKLSDGELKAY-ADSDSTKYTFDIKDTL 356

Query: 474 LV--LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
            V  L +         D  L +Y++D   + + ++ +  ++      E    ++ SI + 
Sbjct: 357 TVSGLEKLN---NNKFDTTLAAYLVDPDSNDYSLSRLCAQY---GVPEGNSIQEKSITVA 410

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            ++D                   +L  K+       V   ++ P+  V+  ME  G+ ID
Sbjct: 411 ALND-------------------ILNCKISETGSAAVLTDIEIPLATVLVAMEREGVSID 451

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            D +K    E+ +    +   IY+ +G +FN+ SPKQLG +LF KL  PS  KTKTG   
Sbjct: 452 ADGIKAFGKEVCEKAEKISREIYEYAGYEFNIGSPKQLGSVLFEKLALPSAKKTKTGY-- 509

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +T  D+ +     +PI+  I E+R L+K+++TY   L   + +   R+H+ +    T TG
Sbjct: 510 STNADVLESLMDKHPIVPLITEYRALTKLQNTYVTGLLKVVGEDG-RIHSTFKQTETRTG 568

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R++S EPN+QNIP++T LG+++RR F +     L+ ADYSQIELR+LAHI+    + + F
Sbjct: 569 RISSAEPNIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAF 628

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            + +DIH + A+++F   IE V+P +R  AK +NF I+YGI  F L+  + +   +A++Y
Sbjct: 629 LDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEY 688

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I+ Y  ++ GI +Y+E T    +++GYVET+FGRR +  E+ +   +++   ER A N P
Sbjct: 689 IRSYLSKYSGIAQYMELTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTP 748

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQG+AADI + AMI V+  L+D  L  +++LQ+HDEL+ E  E+     + ++   ME A
Sbjct: 749 IQGTAADIIKIAMIKVYNRLKDSGLDARLILQVHDELIVEAKEDCAEKVALLLKEEMENA 808

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
               + L VP+ V++ +   W + +
Sbjct: 809 ----VKLTVPMTVDVNIGKTWYDTH 829



 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 159/302 (52%), Gaps = 8/302 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DG+S + RAFY   +L+    G+  NA+ GF N L  L ++   +      AV FD
Sbjct: 3   FLIIDGNSILNRAFYGIRVLTNSR-GVATNAVTGFMNTLLMLEKDVNPDM----IAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y  YKANR  +PE L  QLP ++    A GI  IE +GFEADDII T + 
Sbjct: 58  LKAPTFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +    T+ + D+D  QLV+    +    T  +     + +++++G+ P++M+ ++A
Sbjct: 118 ACADKKIPCTVSTGDRDSFQLVNDYVTVRLAKTKGDIYYTPDVIMEEYGVTPKQMIEVKA 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIKQKKRRENILEYAETARLS 243
           L GDS DNIPG+ GIG KTA  L++E+ +++ +  N  S +  K  R  +    E+  +S
Sbjct: 178 LMGDSSDNIPGVAGIGEKTALSLIKEFASVDGVYENIGSTLITKGVRTKLENGKESCYMS 237

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+L  +    PI   L H + ++ +   L   L  LE  K++ ++        A  +  +
Sbjct: 238 RQLAKICLTAPIDTELSHYVPKERDDTELAKLLSELEMYKMLQKLKLHPTSAPAGSKEAL 297

Query: 304 LD 305
            +
Sbjct: 298 EE 299


>gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92]
 gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054]
 gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
 gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
          Length = 904

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/515 (33%), Positives = 283/515 (54%), Gaps = 9/515 (1%)

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKE 519
             K  H  K     L   G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E
Sbjct: 392 KPKALHEAKAAVHDLAGRGWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE 451

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
             + ++ S+  D  +D++  +  I  +  ++ L   L  +L       +   ++ P+  V
Sbjct: 452 TPQQQQLSLLDDDDTDAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRV 511

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME  GI +D  +L ++ ++    +    E  Y + G++ NL SPKQL  +LF +L  
Sbjct: 512 LAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGM 571

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   +TKTG            +   +P ++++L  R ++++K T  D L   +     R+
Sbjct: 572 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADG-RI 629

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRIL 758
           HT ++     TGRL+S EPNLQNIPI+TD  ++IR AF+      +L++ADYSQIE+RI+
Sbjct: 630 HTTFNQTIAATGRLSSTEPNLQNIPIRTDASRRIRDAFVVGDGYAELMTADYSQIEMRIM 689

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L + F    D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+
Sbjct: 690 AHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLS 749

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL+I   EA + +  YF RF G+ +Y+       R++GY  T+ GRR +  E++S    
Sbjct: 750 QQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQ 809

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R   ERAA+NAPIQGSAADI + AMI V K+L + +LA++MLLQ+HDEL+FE+   E  
Sbjct: 810 VREAAERAALNAPIQGSAADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERE 869

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
               ++   M  A      L VPL+V++    +W 
Sbjct: 870 RVEALVRDKMGGA----YPLDVPLEVSVGYGRSWD 900



 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 156/308 (50%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H A
Sbjct: 14  KPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTHIA 69

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IA
Sbjct: 70  AAFDVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIA 129

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P +
Sbjct: 130 TLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQ 189

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++  K  + +     
Sbjct: 190 YPDFAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRG-KVGDALRANLA 248

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +   +R+L  L  DVP+    + L L+  +   +      LEF  L +R+  T       
Sbjct: 249 SVVRNRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFDTLAAAGGP 308

Query: 299 IEPVVLDI 306
                 D+
Sbjct: 309 EVDEGFDV 316


>gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17]
 gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46]
 gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
 gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
          Length = 904

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/515 (32%), Positives = 283/515 (54%), Gaps = 9/515 (1%)

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKE 519
             K  H  K     L   G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E
Sbjct: 392 KPKALHEAKAAVHDLAGRGWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE 451

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
             + ++ S+  D  +D++  +  I  +  ++ L   L  +L       +   ++ P+  V
Sbjct: 452 TPQQQQLSLLDDDDTDAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRV 511

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME  GI +D  +L ++ ++    +    +  Y + G++ NL SPKQL  +LF +L  
Sbjct: 512 LAKMESAGIAVDLPMLTELQSQFGDQIRDAADAAYGVIGKQINLGSPKQLQVVLFDELGM 571

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   +TKTG            +   +P ++++L  R ++++K T  D L   +     R+
Sbjct: 572 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADG-RI 629

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRIL 758
           HT ++     TGRL+S EPNLQNIPI+TD  ++IR AF+      +L++ADYSQIE+RI+
Sbjct: 630 HTTFNQTIAATGRLSSTEPNLQNIPIRTDASRRIRDAFVVGDGYAELMTADYSQIEMRIM 689

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L + F    D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+
Sbjct: 690 AHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLS 749

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL+I   EA + +  YF RF G+ +Y+       R++GY  T+ GRR +  E++S    
Sbjct: 750 QQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQ 809

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
           +R   ERAA+NAPIQGSAADI + AMI V K+L + +LA++MLLQ+HDEL+FE+   E  
Sbjct: 810 VREAAERAALNAPIQGSAADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERE 869

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
               ++   M  A      L VPL+V++    +W 
Sbjct: 870 RVEALVRDKMGGA----YPLDVPLEVSVGYGRSWD 900



 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 156/308 (50%), Gaps = 10/308 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H A
Sbjct: 14  KPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTHIA 69

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD    TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IA
Sbjct: 70  AAFDVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIA 129

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T    AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P +
Sbjct: 130 TLATQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQ 189

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
                AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++  K  + +     
Sbjct: 190 YPDFAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRG-KVGDALRANLA 248

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           +   +R+L  L  DVP+    + L L+  +   +      LEF  L +R+  T       
Sbjct: 249 SVVRNRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFDTLAAAGGP 308

Query: 299 IEPVVLDI 306
                 D+
Sbjct: 309 EVDEGFDV 316


>gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
 gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
          Length = 932

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 171/517 (33%), Positives = 272/517 (52%), Gaps = 9/517 (1%)

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              K  H++K   L L   G S+ G   D  L +Y+   G+ + D+A +  ++L    + 
Sbjct: 421 SRPKAVHDVKGPILALAARGFSLAGVTSDTALAAYLALPGQRTFDLADLVLRYLRRDLRP 480

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
              S    + ID   ++      +  +   L+L   L   L       +   ++ P++ V
Sbjct: 481 ET-SETGQLTIDGSDEAAAAAADVVRARATLELADALDADLARRGATALLRDVELPLVTV 539

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ ME  GI  D D L  +       +  +     ++ G  FNLSSPKQL  ILF +L  
Sbjct: 540 LAGMERAGIAADTDHLLDLQKHYGAQVTEVAAQAQEIVGRPFNLSSPKQLQVILFDELGL 599

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   K KTG               D+P++  +L  R +++++ T  DSL   I+    RV
Sbjct: 600 PKTKKIKTGYTTDADALAWLSTQADHPLLAVLLRHRDVARLR-TVVDSLIPMID-DAGRV 657

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRIL 758
           HT ++     TGRL+S +PNLQNIP++T  G++IRRAF+     + L++ADYSQIE+RI+
Sbjct: 658 HTTFNQMIAATGRLSSADPNLQNIPVRTAEGRQIRRAFVVGAGYESLLTADYSQIEMRIM 717

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L   F +  D+H  VAA+ FG+ +++V P++RR  K +++ + YG+S F LA
Sbjct: 718 AHLSGDKGLIGAFASGEDLHTFVAAQAFGIPVDEVDPELRRRIKAMSYGLAYGLSAFGLA 777

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL I   EA + ++ YF RF G+ +++       R +GY ETI GRR +  ++ S  + 
Sbjct: 778 GQLGIHPEEAREQMEAYFARFGGVRDFLRGVVERARADGYTETILGRRRYLPDLTSDNTQ 837

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R + ER A+NAPIQGSAADI + AM+ V + L +H   +++LLQ+HDELV E+   E  
Sbjct: 838 RRQMAERMALNAPIQGSAADIIKIAMLGVDRKLREHGARSRLLLQVHDELVLEIAPGERA 897

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
               ++   M  A      + VPL+V++     W + 
Sbjct: 898 DVEALVRTEMGGA----YQMSVPLEVSVGSGRTWDDA 930



 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 142/299 (47%), Gaps = 10/299 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L L+DG S  YRAF+A P+ +     G P NA+ GF +ML  +L++ R     +H AV +
Sbjct: 46  LLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDER----PTHVAVAW 101

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  TFR+  Y +YKA R + P   + Q+ L+     +  +P +   G+EADD+IAT  
Sbjct: 102 DLPTPTFRHTQYAEYKAGRAETPADFVGQVSLIHQVCDSLAVPGVTAAGYEADDVIATLA 161

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                 G  V +++ D+D +QLV     +  T +      +     V  K+G+ P +   
Sbjct: 162 TQGAALGMQVLVVTGDRDALQLVDERVTVLMTRRGISDMTRFTPAEVEAKYGLTPTQYPD 221

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  DN+P +PG+G KTA   +Q++G+L  ++  A  +   K   ++  +     
Sbjct: 222 FAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAALVDRADEV-GGKAGASLRAHLANVI 280

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +R L  L  DVP+ +    L L   +   +      L+F  L  R+           +
Sbjct: 281 RNRSLTELARDVPLAVTPTDLQLRPWDREAVHQLFDTLQFRVLRERLYAALGTVEPEAD 339


>gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3]
          Length = 829

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 179/628 (28%), Positives = 312/628 (49%), Gaps = 55/628 (8%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L        ++    ++++  ++ + +QKL+   +++              P     + 
Sbjct: 252 ELSHYVPKERDDTELARLLSELEMYKMLQKLKLHPTSA--------------PAGSKEAL 297

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +        +    I L+   S  +       +     LK +  +    K   +IK   
Sbjct: 298 EESAAKQIPAMPAGDIVLTQEGSVYAGTVGAPVELSDGELKAY-ADSDSTKYTFDIKETL 356

Query: 474 LV-----LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
            V     L           D  L +Y+ D   + + ++ +  ++      E    ++ SI
Sbjct: 357 TVTGCERLKN------NRFDTTLAAYLADPDSNDYSLSRLCAQY---GVPEGNSIQEKSI 407

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  ++D                   +L  K+       V   ++ P+  V+  ME  G+
Sbjct: 408 TVAALND-------------------ILNCKISETGSAAVLTDIEIPLATVLVAMEREGV 448

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID D +K    E+ +    +   IY+ +G +FN+ SPKQLG +LF KL  PS  KTKTG
Sbjct: 449 SIDADGIKAFGKEVCEKAEKISREIYEYAGYEFNIGSPKQLGSVLFEKLALPSAKKTKTG 508

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T  D+ +     +PI+  I E+R L+K+++TY   L   + +   R+H+ +    T
Sbjct: 509 Y--STNADVLESLMDKHPIVPLITEYRALTKLQNTYVTGLLKVVGEDG-RIHSTFKQTET 565

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGR++S EPN+QNIP++T LG+++RR F +     L+ ADYSQIELR+LAHI+    + 
Sbjct: 566 RTGRISSAEPNIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMK 625

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F + +DIH + A+++F   IE V+P +R  AK +NF I+YGI  F L+  + +   +A
Sbjct: 626 KAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKA 685

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           ++YI+ Y  ++ GI  Y+E+T    +++GYVET+FGRR +  E+ +   +++   ER A 
Sbjct: 686 SEYIRSYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAK 745

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQG+AADI + AMI V+  LE+  L  +++LQ+HDEL+ E  E+     + ++   M
Sbjct: 746 NTPIQGTAADIIKIAMIKVYNRLEESGLDARLILQVHDELIVEAKEDCAEKVALLLKEEM 805

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A    + L VP+ V++ +   W + +
Sbjct: 806 ENA----VKLTVPMTVDVNIGKTWYDTH 829



 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 8/302 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DG+S + RAFY   +L+    G+  NA+ GF N L  L     K+      AV FD
Sbjct: 3   FLIIDGNSILNRAFYGIRVLTNSR-GVATNAVTGFMNTLLML----EKDVDPDMIAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A TFR+++Y  YKANR  +PE L  QLP ++    A GI  IE +GFEADDII T + 
Sbjct: 58  LKAPTFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +    T+ + D+D  QLV+    +    T  +     + +++++G+ P++M+ ++A
Sbjct: 118 ACADKKIPCTVSTGDRDSFQLVNDYVTVRLAKTKGDIYYTPDVIMEEYGVTPKQMIEVKA 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIKQKKRRENILEYAETARLS 243
           L GDS DNIPG+PGIG KTA  L++E+ +++ +  N  S +  K  R  +    E+  +S
Sbjct: 178 LMGDSSDNIPGVPGIGEKTALSLIKEFASVDGVYENIGSTLITKGVRTKLENGKESCYMS 237

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           R+L  +    PI   L H + ++ +   L   L  LE  K++ ++        A  +  +
Sbjct: 238 RQLAEICLTAPIDTELSHYVPKERDDTELARLLSELEMYKMLQKLKLHPTSAPAGSKEAL 297

Query: 304 LD 305
            +
Sbjct: 298 EE 299


>gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
 gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
          Length = 829

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 178/628 (28%), Positives = 311/628 (49%), Gaps = 55/628 (8%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            L        ++    ++++  ++ + +QKL+   +++              P     + 
Sbjct: 252 ELSHYVPKERDDAELARLLSELEMYKMLQKLKLHPTSA--------------PTGSKEAL 297

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +        +    I L+      +       K     LK +  +    K   +IK   
Sbjct: 298 EESAAKQIPAMPAGDIVLTQEGGVYAGTVGAPVKLSDVELKAY-ADSDSTKYTFDIKETL 356

Query: 474 LV-----LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
            V     L           D  L +Y+ D   + + ++ +  ++      E    ++ SI
Sbjct: 357 TVTGCERLKN------NRFDTTLAAYLADPDSNDYSLSRLCAQY---GVPEGNSIQEKSI 407

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            +  ++D                   +L  K+       V   ++ P+  V+  ME  G+
Sbjct: 408 TVAALND-------------------ILNCKISETGSAAVLTDIEIPLATVLVAMEREGV 448

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ID D +K    E+ +    +   IY+ +G +FN+ SPKQLG +LF KL  PS  KTKTG
Sbjct: 449 SIDADGIKAFGKEVCEKAEKISREIYEYAGYEFNIGSPKQLGSVLFEKLALPSAKKTKTG 508

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T  D+ +     +PI+  I E+R L+K+++TY   L   + +   R+H+ +    T
Sbjct: 509 Y--STNADVLESLMDKHPIVPLITEYRALTKLQNTYVTGLLKVVGEDG-RIHSTFKQTET 565

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            TGR++S EPN+QNIP++T LG+++RR F +     L+ ADYSQIELR+LAHI+    + 
Sbjct: 566 RTGRISSAEPNIQNIPVRTPLGREMRRFFTAKDGCLLVDADYSQIELRVLAHISGDEIMK 625

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           + F + +DIH + A+++F   IE V+P +R  AK +NF I+YGI  F L+  + +   +A
Sbjct: 626 KAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKA 685

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
           ++YI+ Y  ++ GI  Y+E+T    +++GYVET+FGRR +  E+ +   +++   ER A 
Sbjct: 686 SEYIRSYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAK 745

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N PIQG+AADI + AMI V+  L++  L  +++LQ+HDEL+ E  E+     + ++   M
Sbjct: 746 NTPIQGTAADIIKIAMIKVYNRLKESGLDARLILQVHDELIVEAKEDCAEKVALLLKEEM 805

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E A    + L VP+ V++ +   W + +
Sbjct: 806 ENA----VKLTVPMTVDVNIGKTWYDTH 829



 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 157/285 (55%), Gaps = 8/285 (2%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             ++DG+S + RAFY   +L+    G+  NA+ GF N L  L ++   +      AV FD
Sbjct: 3   FLIIDGNSILNRAFYGIRVLTNSR-GVATNAVTGFMNTLLMLEKDVNPDM----IAVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A+TFR+++Y  YKANR  +PE L  QLP ++    A GI  IE +GFEADDII T + 
Sbjct: 58  LKALTFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSA 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +    T+ + D+D  QLV+    +    T  +     + +++++G+ P++M+ ++A
Sbjct: 118 ACADKKIPCTVSTGDRDSFQLVNDYVTVRLAKTKGDIYYTPDVIMEEYGVTPKQMIEVKA 177

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIKQKKRRENILEYAETARLS 243
           L GDS DNIPG+PGIG KTA  L++E+ +++ +  N  S +  K  R  +    E+  +S
Sbjct: 178 LMGDSSDNIPGVPGIGEKTALSLIKEFASVDGVYENIGSTLITKGVRTKLENGKESCYMS 237

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R+L  +    PI   L H + ++ +   L   L  LE  K++ ++
Sbjct: 238 RQLAEICLTAPIDTELSHYVPKERDDAELARLLSELEMYKMLQKL 282


>gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
 gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
          Length = 859

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/526 (32%), Positives = 279/526 (53%), Gaps = 28/526 (5%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
             L ++  N    K  H+ K     L   G+ + G   D  L +Y+L     +  +A + 
Sbjct: 355 KVLAEWLANPQATKWLHDSKQTYHTLQDQGLKLDGVEHDTSLAAYLLRPDVRTLGLADVV 414

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           Q+ + +   E                        E +  + +L   L P++       +Y
Sbjct: 415 QRHVGHELSENATGP-------------------ERAQAVAELVRALTPEIEAAGQAELY 455

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQ 628
             L+ P+  +++ ME  GI +D   L+++S +    L        +L+GE + NLSSPKQ
Sbjct: 456 FDLEVPLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAARELAGEPELNLSSPKQ 515

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           L  +LF     P   KTKTG     A+  +     ++P + +++  R+  K+KST  D L
Sbjct: 516 LQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHREYQKMKST-IDGL 574

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLIS 747
              +     R+HT ++     TGRL+S +PNLQNIP++TD G+KIR AF        L++
Sbjct: 575 IEAVGDDG-RIHTTFNQKGAATGRLSSSDPNLQNIPVRTDAGRKIRAAFTVGEGYETLLT 633

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           ADYSQIE+R++AH+++   L + + +  D+H  V + +F V +++V+P++RR  K +++ 
Sbjct: 634 ADYSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYG 693

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
           ++YG+S F L+ QL+I   EA   +  YF RF G+  Y++      ++ GY ET++GRR 
Sbjct: 694 LVYGLSAFGLSQQLKISAGEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGRRR 753

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  E+NS     R   ERAA+NAPIQG+AADI + AM+ V + +   +LA+++LLQ+HDE
Sbjct: 754 YLPELNSSNRVARENAERAALNAPIQGTAADIIKLAMLRVDREITRQQLASRVLLQVHDE 813

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           LV EV   E+   ++++   M+ A      LRVPL V+    ++W 
Sbjct: 814 LVVEVAPGELEQITELVEREMDAAA----QLRVPLDVSAGTGDSWD 855



 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 196/467 (41%), Gaps = 24/467 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L L+DG S  +RAFYA P  +     G   NA+ GF  M   L+   +     +H A  
Sbjct: 3   KLLLLDGHSLAFRAFYALPAANFSTVGGQHTNAVYGFLGMFLTLMDKEQ----PTHVAAA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR E +P+YKA RP  PE    Q+ L+R   +A G+  ++ + +EADDIIAT 
Sbjct: 59  FDLSGPTFREESFPEYKAQRPSTPEEFKGQIELIRRTLEALGVTTLDKESYEADDIIATL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
                K+G  V I + D+D +QLV+    +  T+K      +   + V +K+G+ P +  
Sbjct: 119 ATAGAKDGMDVLICTGDRDSLQLVTEDVTVLYTLKGVSELHRFTPQAVEEKYGVTPTQYP 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L AL GD+ DN+PG+PG+G KTA   + +YG+L+ ++ N   I   K   N+ E  +  
Sbjct: 179 DLAALRGDTSDNMPGVPGVGPKTAQKWIAKYGSLQGVIDNMDDI-GGKVGANLRENIDNV 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN----RVATTYDCDA 296
            L+R +  +  D+ +   L+ L   D +    +   + L+F   +     ++      D+
Sbjct: 238 VLARDITEMVRDLKLVDDLDALSPRDIDPNEALGMFEELQFGTGLRNRAFKIMGVEFADS 297

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI-----NSEQTPQKLF 351
           A I   V ++   +      +        +   Q + L      I     + +   +K+ 
Sbjct: 298 AAIPVTVEELKPGKLGAWLKKRTRGTVVDVNGEQLTLLDRDNVAIVQDLADVDPKDEKVL 357

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS-----FKIITDTMDAFHSKP 406
            E L         +DS       +D    +  +E   S +       + T  +     + 
Sbjct: 358 AEWLANPQATKWLHDSKQTYHTLQDQGLKLDGVEHDTSLAAYLLRPDVRTLGLADVVQRH 417

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +   +S      + +  V  +   L+         +     E+   L
Sbjct: 418 VGHELSENATGPERAQAVAELVRALTPEIEAAGQAELYFDLEVPLAL 464


>gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
 gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
          Length = 905

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 172/582 (29%), Positives = 278/582 (47%), Gaps = 12/582 (2%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D + +   + + + ++       T  + +   I L+      +     +T +    L  +
Sbjct: 333 DWLASRAGRTVGVDVA----GRGTPAQGDAWGIALAAGGQGVAYDLADITPDDEQALATW 388

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
             +    K+ H  K     L   GI + G   D  L +Y+    +  +D+  +  + L  
Sbjct: 389 LADPTAPKVLHGAKTAWHALAARGIGLDGVVFDTELAAYLCYPDQRGYDLGDLVARHLGR 448

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
             K      + ++ +D              +  +  L   L  +L       +   ++ P
Sbjct: 449 ELKVGDDDAQGALDLDLGGAGTQGVREATRAAAVADLAQALAGQLDDRGAASLLTDVELP 508

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  V++++E TGI  D   L  +    +  +       YD  G + NL SPKQL ++LF 
Sbjct: 509 LSAVLARVEATGIATDTAYLTGLERGFADQVAQAAAEAYDAIGHEVNLGSPKQLQEVLFG 568

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           +L  P   KTKTG     A   E      +P ++++L  R  +K++ T  + L   ++  
Sbjct: 569 ELDMPKTKKTKTGYTTDAAALAELYAKTGHPFLEHLLAHRDAAKLRVT-VEGLLKSVHPD 627

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIE 754
             R+HT +      TGRL+S EPNLQNIPI+T+ G++IRRAF      + L++ADYSQIE
Sbjct: 628 G-RIHTTFQQTIAATGRLSSTEPNLQNIPIRTEAGRQIRRAFRVGEGFESLLTADYSQIE 686

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           +RI+AH++    L + F    D+HR V + +FGV    V+ +MR   K +++ + YG+S 
Sbjct: 687 MRIMAHLSGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVKAMSYGLAYGLSA 746

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F L+ QL I   EA   +  YF RF G+ EY++      R  GY  T+ GRR +  ++ S
Sbjct: 747 FGLSQQLGIATGEAQGLMDDYFARFGGVREYLDGVVEEARATGYTATVLGRRRYLPDLTS 806

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                R + ER A+NAPIQGSAADI + AM+ V + L+   L +++LLQ+HDELV EV  
Sbjct: 807 DNRQRRQMAERMALNAPIQGSAADIIKLAMLGVQRELDARGLRSRLLLQVHDELVVEVAP 866

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            E   A  ++   M  A      L VPL V++     W +  
Sbjct: 867 GEREAAEDVLRTQMGAA----YTLDVPLDVSVGSGETWHDAG 904



 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 187/449 (41%), Gaps = 20/449 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              L L+DG S  YRAFYA P       G   NA+ GF +ML KLL + +     +H AV
Sbjct: 16  RPRLLLIDGHSMAYRAFYALPDTMATTSGQVTNAVYGFTSMLTKLLGDEQ----PTHLAV 71

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR E Y +YK  R + P     Q+PL++   +A  +P +E +GFEADDIIAT
Sbjct: 72  AFDVSRRSFRTERYAEYKGTRSETPPPFKGQVPLIKDVLEALRVPTLEREGFEADDIIAT 131

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKM 179
               A   G  V + S D+D +QLV     L   V+      +   E V +K+G+PPE+ 
Sbjct: 132 LAGQASAAGMEVLVCSGDRDSIQLVDADVTLLYPVRGVSEMARFTPETVAEKYGVPPEQY 191

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             L AL G+S DN+PG+PG+G KTAA  + ++G LE +L     +K  K  EN+    + 
Sbjct: 192 PDLAALVGESSDNLPGVPGVGPKTAAKWVTQFGGLEPLLAGVGELKG-KAAENLRAAVDQ 250

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            RL+R+L  L  DV +    + L+L   +   +     AL+F  L +R+       A + 
Sbjct: 251 VRLNRELNALLRDVVLEYGPDDLVLRGFDREAVHRIADALQFGVLRDRLLAVDPAAADDA 310

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                D     +        +      +  +   +        ++     + L    +  
Sbjct: 311 AATSPDAGFDLDVLDLPAGGLGDWLASRAGRTVGVDVAGRGTPAQGDAWGIALAAGGQGV 370

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKD 418
            Y + +       + + +  W+            K     + A       +         
Sbjct: 371 AYDLADI---TPDDEQALATWLADPTAPKVLHGAKTAWHALAARGIGLDGVVF------- 420

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           DT       + D   +   D   ++   +
Sbjct: 421 DTELAAYLCYPDQRGYDLGDLVARHLGRE 449


>gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
 gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
          Length = 873

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 201/529 (37%), Positives = 307/529 (58%), Gaps = 18/529 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509
              + F  +E   K G++IK        +G+ ++ +  D+ L SY+L+      +I S+ 
Sbjct: 356 QNFQNFINDESIEKYGYDIKKCINAAKWHGLEIKNYVFDLQLASYILNPSLKD-EIRSVC 414

Query: 510 QKWLSYT----RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           + +  Y      +   K  K  IP      + + +H I+ +  I  L      KL  E  
Sbjct: 415 EYYDYYDVLYDEEVYGKGAKKKIP----ETTAIADHLIKQAKAIYVLKDKAIEKLKQENQ 470

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
             +Y+ ++ P+  +++ ME  G +ID+D+LK +  +  K +  LE+ I+ L+ + FN++S
Sbjct: 471 FDLYKDVEMPVAKILASMEYQGAKIDKDVLKDLENQFGKEIEVLEKEIHQLANKNFNIAS 530

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PKQLG++LF  L  P+G KTKTG   +T+ D+       +PII  +L++R LSK+ STY 
Sbjct: 531 PKQLGEVLFEDLGLPNGKKTKTGY--STSVDILNKLKDVHPIINKVLQYRTLSKLYSTYI 588

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
             L   I    + +HT Y+ A T TGRL+S +PNLQNIP+KT  G+ IR+AFI      L
Sbjct: 589 IGLQEQIFVDGK-IHTIYNQALTQTGRLSSTDPNLQNIPVKTAEGKLIRKAFIPEYDY-L 646

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           +S DYSQIELR+LAH+A +  L + F    DIHR  A+EIFGV+ ++V   MRR+AK +N
Sbjct: 647 VSFDYSQIELRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVN 706

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F IIYG+S F LA Q+ +P +EA ++IKRYF  +P I  Y++    F ++NGYV T+  R
Sbjct: 707 FGIIYGMSDFGLAEQVGVPVNEARNFIKRYFENYPEIKTYMDNNIEFCKKNGYVTTMLNR 766

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           +    EIN      + + +R A+N+PIQGSAADI + AMI V +  + H L +KM+LQ+H
Sbjct: 767 KRFIREINEKNYMRQELGKRLAMNSPIQGSAADIIKVAMIKVDELFKKHNLKSKMILQVH 826

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+F+V +EE+    +++   M  A    + + V LK     + NW E
Sbjct: 827 DELIFDVYKEELEEVMEVVAKGMTTA----VKMNVELKSEGSYAINWYE 871



 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 167/315 (53%), Gaps = 13/315 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K   L L+DG+S +YRA+YA      L    DG+P NA+ GF NML  +L+       
Sbjct: 1   MDKMKELVLIDGNSLLYRAYYATAAMGNLMVNKDGIPTNAVYGFANMLENILK-----GN 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +  V FDY   TFRN+++  YK  R   P+ L+ Q  ++R    A GI   EI+G+E 
Sbjct: 56  PEYIVVAFDYGKKTFRNDLFEVYKGTRSATPDELVCQFSMIREYLTAHGIHYQEIEGYEG 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I T   IA K+ F V+I+++DKD++QLV     +Y T K     EKI  E   + +G
Sbjct: 116 DDVIGTIASIASKKRFKVSIVTSDKDMLQLVDDNVSVYLTKKGVAELEKITPEKFKEMYG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P++M  L+ L GD  DNIPGIPG+G KTA  LL++Y  +EN+  +   +K  K  E I
Sbjct: 176 LIPDQMRDLKGLMGDKADNIPGIPGVGEKTALKLLKQYHTIENLNDHLDELKG-KMGEKI 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            +  +   LS+K+  +  DVP+ + L+    +  +   L  F +      L+ R++   +
Sbjct: 235 RDNIDQGLLSKKIATIIKDVPMELDLDDFYYQGFDYNELAEFYRRYNMNSLLKRMSLANE 294

Query: 294 CDAANIEPVVLDINT 308
            +       V  ++ 
Sbjct: 295 DNKGETVIDVKIVDC 309


>gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121]
          Length = 466

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 180/467 (38%), Positives = 275/467 (58%), Gaps = 12/467 (2%)

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           Q ++        K +K  +P D+I    + +H       + +    ++ +L       + 
Sbjct: 10  QHYVQDNVTIYGKGKKHHVPEDEI----LNKHVASIIEAVSESKAEMQKQLKEYNQESLL 65

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             L+ P+ +++S+ME  GI  D   L+Q+  EI + L  L +NI++ +GE+FN++SPKQL
Sbjct: 66  ADLELPLAEILSEMEEIGIFTDVKDLQQMEKEIQEKLDVLIKNIHEAAGEEFNINSPKQL 125

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
           G +LF  L+ P   KTKTG   +TA D+ +   G +PII  ILE+RQLSK++STY + L 
Sbjct: 126 GVVLFETLELPVIKKTKTGY--STAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQ 183

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISA 748
             I+    R+HT ++     TGRL+S++PNLQNIPI+ + G+KIR+AF        ++SA
Sbjct: 184 KVIS-DDHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPTSSDSVILSA 242

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR+LAHI +   + + F N  DIH   A ++F V  ++V   MRR AK +NF I
Sbjct: 243 DYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVEADEVDSLMRRQAKAVNFGI 302

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGIS + L+  L I R +A  +I  Y   FPG+ +Y+       +  G+VET+  RR +
Sbjct: 303 VYGISDYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQGFVETLLHRRRY 362

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             +I S   ++R+  ER A+N PIQGSAADI + AM+  +K ++      K+LLQ+HDEL
Sbjct: 363 IPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFNKEVQHTDYHAKLLLQVHDEL 422

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +FEVP++E+ + S+ +   ME A    + L VPLKV+      W + 
Sbjct: 423 IFEVPKDEVASFSKFVEEIMESA----LKLDVPLKVDSSYGATWYDA 465


>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
 gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
          Length = 875

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/526 (40%), Positives = 302/526 (57%), Gaps = 35/526 (6%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              ++   KI +++K            +   ED+ LM Y L +G S  ++          
Sbjct: 380 LLTDKSIKKITYSLKPLLKFYANQSHDITAIEDLELMQYALSAGLSQKNL---------- 429

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK----LIVEKLLHVYER 571
                           ++      E+ I  S  I+  ++ L  +    L   K   +Y  
Sbjct: 430 --------------FKEVLKETWIENIIIESAKIVINFITLYKQTIWELKDNKTFRLYSN 475

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +D P+  ++ +ME  GI +D + LKQ+SAE    +L LEE I+ LSG KFN+ SPKQLG+
Sbjct: 476 IDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKFNIGSPKQLGE 535

Query: 632 ILFTKLKFPSGA-KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           ILF K++ P G    K   + T A+ LE+++     I   +L WRQL+K+K+TY DSLP 
Sbjct: 536 ILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPK 595

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            I+  T RVHT +   ST TGRL+S EPNLQN+PI++  G +IR+AFI+    KLISADY
Sbjct: 596 QIDNITHRVHTKFLQTSTTTGRLSSQEPNLQNVPIRSSEGNQIRQAFIAKEGYKLISADY 655

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELRIL+HIA I  L Q F N  DIH   A +IF +   +++ + RR AK INF IIY
Sbjct: 656 SQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIY 715

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS F LA QL +   EA++YIK+YF  + G+ EY+E+TK F   NGYV   FGR+    
Sbjct: 716 GISAFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVP 775

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            I+  K  ++   ERAAINAPIQG+ ADI + AMI++ + +E  KL T+++LQIHDEL+F
Sbjct: 776 LIHDKK--LKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLF 833

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E P +E+   + II   ME +     N+ VP+   I+  NNW E +
Sbjct: 834 EAPIDEVEIITPIIKKIMENST----NMDVPIITEIRAGNNWMEIH 875



 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 128/328 (39%), Positives = 185/328 (56%), Gaps = 6/328 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLT-SPKGEPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+G   +K+ 
Sbjct: 116 IATFATKTAALGEHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    ETA
Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSRETA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D    + +
Sbjct: 236 LISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLDIKINDYK 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKT 328
            +  D   TE K I    E+       T
Sbjct: 296 EIA-DNKVTEIKEINNANELADFAKEAT 322


>gi|309810195|ref|ZP_07704040.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169467|gb|EFO71515.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 681

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 214/774 (27%), Positives = 364/774 (47%), Gaps = 111/774 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
                +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GAMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++                EN+ E  
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSV----------------ENLYEKI 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +  + S                           ++  +L   +   ++ +   T DC + 
Sbjct: 222 DQIKAS---------------------------KIKEYLIRDKNNAILGKKLATIDCTSP 254

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
                 +D+   + K  A +    R    +      LS+               L  +++
Sbjct: 255 ------VDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSE---------------LPDVEE 293

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +     +   Y  +      + +          SF +     +   ++    ++    + 
Sbjct: 294 IDNKVQDECHYEILDKDNLSEIF---ATDFDHISFNLEMIGDNYHLAQYAGFSVKIKQKI 350

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                                     TL +E  + LKK  E+++  K   ++K + + L 
Sbjct: 351 Y--------------------VCDDVTLLQE--TPLKKILEDKNIAKQVFDLKRNYVGLQ 388

Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533
           R GI++    +DIML SY+ DS  ++ D+  +A  +  +     + I    K       +
Sbjct: 389 RLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ---HSV 445

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++   
Sbjct: 446 DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 505

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +T
Sbjct: 506 TLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTPAKKTKTGY--ST 563

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           + D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGRL
Sbjct: 564 SVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRL 622

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITP 766
           +S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    
Sbjct: 623 SSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKN 676


>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
 gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
          Length = 857

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 189/507 (37%), Positives = 293/507 (57%), Gaps = 30/507 (5%)

Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
           N K     L   G+S+   ED +L++Y+LD+  ++  +  +AQ  L     +   +    
Sbjct: 379 NAKALATHLQVRGVSVEPGEDPLLIAYLLDNTVTNASL--LAQAHLGAPWPDDAPT---- 432

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
                             +    QL   LRP+L  EK   +Y+ +++P+  V+++ME+ G
Sbjct: 433 -----------------RALATAQLLTALRPQLD-EKRAQLYKDVERPLAHVLARMEVRG 474

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           +++D   L+ +S  +      L+  I +L+G  F+++S  QL  +L+ +L   SG KTK 
Sbjct: 475 VRLDSAYLRGLSDSLGARAQELDARIQELAGHPFSVNSRDQLESVLYDELGLASGKKTKL 534

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
              ++TA    +    ++PII  +LE+R+L+K+K TY D LPN +N  T R+HT ++  +
Sbjct: 535 TGKRSTAVSALEPLRDEHPIIPLLLEYRELTKLKGTYLDPLPNLVNPLTGRLHTTFAQTA 594

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGRL+SL PNLQNIPI+++ G++IR+ FI+     LISADYSQIELR+LAHIA    +
Sbjct: 595 VATGRLSSLNPNLQNIPIRSETGREIRKGFIADDGFCLISADYSQIELRLLAHIADDALM 654

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F    DIHR  AA++ GV  + V+P  RR AKT+NF ++YG+S  RL+  L I  +E
Sbjct: 655 QEAFVGGADIHRRTAAQVLGVMEDLVTPNQRRAAKTVNFGVLYGMSAHRLSNDLGISFAE 714

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A+ +I+RYF  +P I EYI+ T  F R++GYVET++GRR    E+ S   ++R   ER A
Sbjct: 715 ASRFIERYFATYPRIREYIDATLAFGREHGYVETMYGRRRLVPELRSANRTMREAGERVA 774

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
            N PIQG+AADI + AM+ + + L    L  ++LLQ+HDEL+ E P +     + +    
Sbjct: 775 YNMPIQGTAADIIKIAMVELDEQLSA--LGARLLLQVHDELLIEAPSDRADEVAALTRRV 832

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974
           ME      + L+VPL+V I    NW +
Sbjct: 833 MEGV----VTLKVPLRVEIGTGPNWYD 855



 Score =  316 bits (809), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 128/496 (25%), Positives = 223/496 (44%), Gaps = 34/496 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M   + + L+DG +  YR+++A P L+    G   NAI GF  +  +L +    +     
Sbjct: 4   MTAPDTVVLIDGHALAYRSYFAIPPLTNSA-GESTNAILGFLRLTLRLEKQVSNQ----- 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V+FD P  TFR+E +  YKA R + PE L  Q+  +R    A G+P +E+ G+EADD+
Sbjct: 58  VIVVFDPPVKTFRHEQFEGYKAGRAQTPEDLPKQINRIRSLVDAMGLPRLEVPGYEADDV 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I T    AE +G  V I+++D+D  QL+S    +  T   + +  + V++K+G+   + V
Sbjct: 118 IGTLAKRAEAQGLNVRIVTSDRDAYQLLSERVKVL-TSDFKLLGPDEVLEKYGVTVGQWV 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAE 238
             +ALTGD+ DNIPG  GIG KTAA LLQE+G+L+ +L  A    +K K  +E I    +
Sbjct: 177 DYRALTGDASDNIPGAKGIGPKTAAKLLQEHGSLDAVLQAAEAGALKPKGTQEKIAASVQ 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
               SR+L  + TD+P+ + L  L     +    ++ L+ LE   L+  V       AA 
Sbjct: 237 DVLFSRELSCMVTDLPLDVELGALRGHG-DRDAALAILRELELNSLLKDVDALMSAQAAG 295

Query: 299 -----IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                   + L    TE      E         +  + S+     +   +E   +     
Sbjct: 296 DVASAPATLALGAPATEAWTTPTEDAAWGYRLSREDELSAHLLDAATFGAE-VARVAPHA 354

Query: 354 RLQKLSQYPINNDSYT--KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
             ++ +   ++  ++   ++VN  + +     L+  G +               P+ IA 
Sbjct: 355 SAEEGATPSVDLSAFEGVRVVNAVNAKALATHLQVRGVSVEPGE---------DPLLIAY 405

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
              +   + S   +     L      D+  +   T ++L+ L+    +E   ++  +++ 
Sbjct: 406 LLDNTVTNASLLAQAH---LGAPWPDDAPTRALATAQLLTALRPQL-DEKRAQLYKDVER 461

Query: 472 D-KLVLHRYGISMRGF 486
               VL R  + +RG 
Sbjct: 462 PLAHVLAR--MEVRGV 475


>gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 849

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 208/533 (39%), Positives = 313/533 (58%), Gaps = 33/533 (6%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS 501
               +++ L  +     +   LKI H+ +  +  +      +   +D+M+MSY LD+G+ 
Sbjct: 343 DQNRSQDALITINSALFSNGILKIIHDTRETRKTIPTIEKVLGSVDDLMIMSYSLDTGKH 402

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H I +I    LS   +                          ++  ++ +   L+ +L 
Sbjct: 403 DHSIPNIIAHNLSENVETF------------------------SAKTLIAIHEKLKQRLF 438

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            EKL  +YER DKP++ V+  ME  GI ++   L+++S +  + +  LE +IY+L+GEKF
Sbjct: 439 KEKLFTIYERFDKPLMKVIFNMEKNGILLNIHKLQELSDKFQQLIAVLENDIYNLAGEKF 498

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++SPKQL D+LF K+      K K+G + T +  LE++      I   IL+WR LSK+K
Sbjct: 499 NIASPKQLSDVLFNKMGLNKKKKLKSGSYSTNSVVLEELEIEGVEIASKILDWRHLSKLK 558

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY D+L   ++    R+HT +S   T TGRL+S  PNLQNIPI++  G  IR+ FI+P 
Sbjct: 559 STYTDALIKQVDPLDGRIHTNFSTTVTATGRLSSSSPNLQNIPIRSKEGNLIRQTFIAPK 618

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRH 800
             K+ISADYSQIELR+LAH+A +T   + F N  DIH + A ++FGV  + +V  Q+RR 
Sbjct: 619 GYKIISADYSQIELRLLAHVANVTAFKEAFANGKDIHGITAGQVFGVQKDMEVDEQLRRK 678

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK+INF I+YGIS F LA +L I   EAA+YI  YF  +P I  Y+EK  +  RQ+GYVE
Sbjct: 679 AKSINFGIMYGISQFGLAKRLGITIEEAAEYINYYFSCYPEIKVYMEKVVSTARQHGYVE 738

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T+FGRR    +IN+    +R   ERAAINAP+QG+AADI + AMI +   L+    A K+
Sbjct: 739 TLFGRRCFVKDINNTIPYLRQFAERAAINAPLQGTAADIIKCAMIQLFDQLK----AGKI 794

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +LQ+HDEL+ EV  E++   ++++   ME      + + +PL+V +K+S+NW 
Sbjct: 795 ILQVHDELLVEVENEKVQETAKLMKDVMEN----IVKISIPLEVEVKISDNWG 843



 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 176/302 (58%), Gaps = 9/302 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQK+    ++DG  F++ A+Y    L+    G+P+ A+ GF NM+ K + +S       +
Sbjct: 1   MQKK-TFTIIDGYGFLFGAYYVLHHLTTT-TGMPIGAVYGFLNMVLKYITHS------DY 52

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             +  D     FR+++YP+YKANR   PE L+PQ  ++R A +AF +   EI+G+EADDI
Sbjct: 53  LTIALDSGKKNFRHDLYPEYKANRVTPPEGLIPQFTILREAIEAFNLSYEEIEGYEADDI 112

Query: 121 IATY-TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IAT     A  +   V IIS+DKDL QL++    ++D +K   ID + VI+K+G+   K+
Sbjct: 113 IATLTAKYANHQDLKVVIISSDKDLFQLLNYDVLIFDPIKNIYIDEKQVIEKFGVNSNKL 172

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L +LTGD  DNIPG+PGIG KTAA LL  + +L N + N + IKQ + R  + E+ E 
Sbjct: 173 LDLFSLTGDVSDNIPGVPGIGPKTAAKLLDRFNSLNNTIENINNIKQTRTRNILTEHKEK 232

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A +SRKL+ L   V +   +    +   N  +L+SFLK  EF  LI +V   +  + ++ 
Sbjct: 233 ALISRKLLSLCEKVDLQHDVIKYKVLSPNMEKLLSFLKKYEFNSLIGKVEKLFSYNESST 292

Query: 300 EP 301
           + 
Sbjct: 293 KE 294


>gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
 gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
          Length = 857

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 196/490 (40%), Positives = 306/490 (62%), Gaps = 20/490 (4%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           F D+ L++Y+LD    +++ + + + +           +  SI ID+  ++  +++    
Sbjct: 385 FYDVTLIAYLLDPTHVTYNRSYVGELF-----------KVPSIYIDE--NASFEQNGNMI 431

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           ++ +L L+      L+   +  +++ +++P+I+V+++ME  GI ID++  K+V   + + 
Sbjct: 432 ADFLLALYTSSYELLVKNDIEKLFKEVEQPLIEVLAEMEKNGISIDEENWKKVRKNMKEK 491

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
              L   IY  +GE+FN++SPKQL  ILF K+  P+G KTKTG   +TA D+ +    D 
Sbjct: 492 EEKLLLEIYREAGEEFNVNSPKQLSHILFDKMGMPTGKKTKTGY--STAADVLENLAIDY 549

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P +KNILE+R L+K+ STY D++P  + K T+RVHT ++   T TGRL+S +PNLQNIP+
Sbjct: 550 PFVKNILEYRTLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNIPV 609

Query: 726 KTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +T+ G+ IR  F+        IS+DYSQ+ELR+LAH++    L + FEN  DIHR  A+E
Sbjct: 610 RTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTASE 669

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV  E+V+ + R HAK +NF IIYGIS F L+ QL I R +A +YIK Y  R+PGIHE
Sbjct: 670 VFGVPFEEVTSEQRSHAKAVNFGIIYGISDFGLSKQLGISRKKADEYIKTYLKRYPGIHE 729

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +++K     R+ G V+T+FGR     +INS     R+  ER A+N PIQGSAADI + AM
Sbjct: 730 FMKKMTEEARKTGKVKTLFGRYRDLPDINSKNFQRRSFAERTAMNTPIQGSAADIMKIAM 789

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I V+  ++  K  +++LLQ+HDELV E  +EE+   S+++  +ME      ++L+V L  
Sbjct: 790 IQVYGKMKKGKYKSRILLQVHDELVIEAVKEEVEEISKLLKETMESV----VSLKVKLVA 845

Query: 965 NIKVSNNWQE 974
           ++ V  NW E
Sbjct: 846 DVHVGKNWAE 855



 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 118/325 (36%), Positives = 170/325 (52%), Gaps = 17/325 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L ++DGSS  YRAFYA PLL   H+G+  NA+ GF  ML  L +N   E    + AV
Sbjct: 2   DKKLVIIDGSSLFYRAFYALPLL--SHNGIYTNAVYGFLRMLAGLYRNLDPE----YIAV 55

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRNEIY DYKA R   P  L+PQ  L++   +  G+   E+ G+E DDI+ T
Sbjct: 56  AFDKDRYTFRNEIYKDYKATRKSAPAELVPQFKLIKDLLRVMGVAVYEMAGYEGDDILGT 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
             +  + E F V I++ D+D +QL S    ++ T K      ++    V++K+GI P ++
Sbjct: 116 LAFKYKDE-FPVLIVTGDRDSLQLSSEKVTVFLTQKGISNMAEMTPSAVVQKYGIKPSQI 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+ GIG KTA  LLQ+Y NLENI  N   IK   ++  +L   E 
Sbjct: 175 IDMKALMGDTSDNIPGVKGIGEKTAVKLLQKYENLENIYKNIEEIKGA-QKTKLLSGKED 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT----YDCD 295
           A LSR L  +R D+PI   LE +  +  +   +      L    +   ++         +
Sbjct: 234 AYLSRNLAKIRIDIPINATLEEMK-QPIHYDEMKELFDKLGLHSIAEELSGLPRFKMLAE 292

Query: 296 AANIEPVVLDINTTENKGIAIETEI 320
           A   E   +       K I+ E EI
Sbjct: 293 AKKKEMEEMKPLLNWEKNISFEDEI 317


>gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
 gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
          Length = 1102

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 185/673 (27%), Positives = 317/673 (47%), Gaps = 53/673 (7%)

Query: 339  SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
            ++ ++         + LQ  +   I +     I ++K++   ++ +      +F   T+ 
Sbjct: 444  TQYDNNLAAHTNLTQNLQNPTFQYIPH----LITDSKELFSLLESIPKGNLVAFDCETNG 499

Query: 399  MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ----DSTGKNTLTKEILSYLK 454
            +D   +  +  +    D             I       +     S  +N  + E      
Sbjct: 500  LDVREADMVGFSFCF-DGLHAYYVPFLHGGIKREKSKYEVMKSQSISQNLFSTEEAKPTF 558

Query: 455  KFFENEHFLK-------------------------------IGHNIKYDKLV-LHRYGIS 482
              F++    K                               IGHNIK+D  +  H +GI 
Sbjct: 559  SLFDDTTMSKDSADNDTTNAPAQISQSDAKKALEILFSYPLIGHNIKFDLHIAWHNFGIK 618

Query: 483  MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
             +   +D ML++++ D  +S   + ++ +K  ++               D I       +
Sbjct: 619  PKHTPQDSMLLAWLDDPSQSV-SLDNLMKKHFNHNMIAFSDIVPKKATFDSIDIKTASNY 677

Query: 542  AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            A E++    QL+   +  L    L  + + L+ P I  +  ME  GI I+    K +   
Sbjct: 678  AAEDAAATFQLYFYFKNTL-YPHLFTLAKDLEFPFIRTLCAMEDCGIAINYSYFKNLKTT 736

Query: 602  ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
             S  L  L++ IY+ +G  FNL+SPKQ+ +ILF  LK  +  K K+G   +T +      
Sbjct: 737  FSHTLQQLQQEIYEKAGVSFNLNSPKQVAEILFDTLKLDTKRKGKSGY--STDEATLLAL 794

Query: 662  CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               +P++  +LE+R++ K+ STY + +     K   R++T +    T TGRL+S  PNLQ
Sbjct: 795  KDSHPVVPLLLEYREIFKLFSTYIEPILKL-GKNENRIYTTFLQTGTNTGRLSSKSPNLQ 853

Query: 722  NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
            NIP+++++G+ IR+ F+S    KL+S DYSQIELR+LAH +    L + F N+ DIH   
Sbjct: 854  NIPVRSEMGRSIRKGFVSRDGYKLLSLDYSQIELRLLAHFSGDKVLLESFHNNADIHAET 913

Query: 782  AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            A  +F  +  K    +R  AK+INF +IYG+   +L+  L I ++EA  YI+ YF  FP 
Sbjct: 914  AKLLF-KDSNKDFSLLRSIAKSINFGLIYGMGARKLSQTLNITQTEAKQYIEDYFATFPS 972

Query: 842  IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            + +++E  K+ + +NGY  T+ GR+ ++D  ++ +   R    R  +N   QGSAAD+ +
Sbjct: 973  VKQFLESQKDSILKNGYSSTLLGRKRYFDFFSATEFM-RANFLREGVNTIFQGSAADLIK 1031

Query: 902  RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
             +M  ++K +E       MLLQ+HDEL+FE+ +  I + S+ +   ME        L+VP
Sbjct: 1032 LSMNEIYKKIESLDNDCFMLLQVHDELIFEIKDSIIESLSKELKEIMEN----IYKLKVP 1087

Query: 962  LKVNIKVSNNWQE 974
            L  N+ + N W E
Sbjct: 1088 LVCNLSIGNTWAE 1100



 Score =  244 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 109/415 (26%), Positives = 181/415 (43%), Gaps = 16/415 (3%)

Query: 1   MQKE-NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           MQ   + + LVD   F +R++YA P L       P + + GF  +++ L +  +     S
Sbjct: 1   MQNTLSKVILVDTFGFFFRSYYALPPLHNSKH-FPTSLLTGFATLIFNLYKEHK----DS 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
                 +      R E YP YKANR + P+ LL QLP+     +  G+P + +QG+EADD
Sbjct: 56  CIIFTLEGGGTNRRKEFYPQYKANRKESPQDLLAQLPVAIEWLEKMGLPTLSLQGYEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            IAT   +A+K+G+   IIS DKDL QL+S    ++D  K++ I  +   +K+G+ P   
Sbjct: 116 CIATLATLAKKDGYETQIISHDKDLYQLISEGIYIFDYAKKQAITQKECYEKFGVLPNDF 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-------IKQKKRREN 232
           +  Q++ GDS DN+PGI GIG K A  +L  + +LE++  +  +       +  K+    
Sbjct: 176 IMYQSIVGDSSDNVPGIKGIGPKGAQSILAHFKSLESLYESIEKDYENIVSLLGKRTAGL 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           I E+ E A +SR LV LRTD+            +     L++    LE  +L   +    
Sbjct: 236 IKEHKEQAFISRNLVTLRTDLLQNYDFLS-KKNEFETSPLLTIKDELESYELHRILQKIL 294

Query: 293 DCDAANIEPV-VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                N + V  + +                  +  + + +S S   +++          
Sbjct: 295 PRRKNNTQHVETIPLGDIGANPFEQRAGFRSQNSGDSKENASQSPTPTQVVKNLDSISCH 354

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
            E L ++S     +D  T       +      L  +   +     D+    H KP
Sbjct: 355 TEPLGEVSNMKAKSDISTSSQYDNHLDSINYALNPVAHPNLDWNLDSTK-MHPKP 408


>gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 537

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 173/538 (32%), Positives = 280/538 (52%), Gaps = 15/538 (2%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503
           LT +  + L  +  +    K  H++K     L   G S+ G   D  L +Y+   G+ + 
Sbjct: 2   LTPDDEAALGDWLADADVPKAAHDVKAVLHALRSRGWSLAGLTSDTALAAYLARPGQRTF 61

Query: 504 DIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           D+A +A ++L      +E    + S +     +D+Q  +  +  ++ I +L   L  +L 
Sbjct: 62  DLADLALRYLRRELRTEEPADGQLSLLGGADEADAQAAQQEMLAASAIAELADALDTELA 121

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
                 +   L+ P+  V++  E  GI +D + L  + ++    +    +N Y + G++ 
Sbjct: 122 ERGGTELLADLELPLAFVLADCEAAGIAVDSETLSDLESDFGGQVREAAQNAYRVIGKEI 181

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NL SPKQL  +LF +L+ P   +TKTG                +  ++ +L+ R  +++K
Sbjct: 182 NLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLYEQTGHEFLQFLLQHRDATRLK 241

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI--- 738
            T  D L   +     R+HT YS     TGRL+S +PNLQN+PI+T  G++IR AF+   
Sbjct: 242 VT-VDGLIKSV-ADDGRIHTTYSQTIAATGRLSSTDPNLQNVPIRTAAGRRIRDAFVVGT 299

Query: 739 SPPTK---KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            P      +L++ADYSQIE+RI+AH+++   L + F +  D H   AA +FGV    VS 
Sbjct: 300 GPEGGAYAELMTADYSQIEMRIMAHLSEDEALIEAFRSQHDFHAETAARVFGVEAAGVSV 359

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + R   K +N+ + YG+S + L+ QLRI   EA   +  YF  F G+ +Y+    +  R+
Sbjct: 360 EQRAKIKAMNYGLAYGLSAYGLSGQLRISTDEAKGLMDDYFAGFGGVRDYLAGVVDQARK 419

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           +GY  TI GRR +  ++ S     R + ER A+NAPIQGSAADI + AM+ V ++L    
Sbjct: 420 DGYTATILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLGVRRALSAEG 479

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           L ++MLLQ+HDELV EV + E  T   ++   M  A     +L VPL+V++    +W 
Sbjct: 480 LRSRMLLQVHDELVLEVADGERETCEALVRREMAAAA----DLSVPLEVSVGYGRSWD 533


>gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
 gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
          Length = 420

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 173/426 (40%), Positives = 259/426 (60%), Gaps = 7/426 (1%)

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           +++    + KL    +L +YE ++ P +  +  ME+ GI +D+  LK+   ++   +  L
Sbjct: 1   MRVHRAFKKKLTETGMLSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEEL 60

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
            E IY  +GE+FN++SPKQLG +LF  +K   G KTKTG   +T+ D+ +      PII 
Sbjct: 61  RELIYKEAGEEFNINSPKQLGVVLFEHMKLEGGKKTKTGY--STSVDVLEKIEHLYPIIS 118

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            ILE+RQL+K+KSTYAD L N+I    +R+H  ++   T TGR++S EPNLQNIP + +L
Sbjct: 119 YILEYRQLTKLKSTYADGLANYI-GDDERIHGKFNQTITATGRISSTEPNLQNIPARVEL 177

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           G+ IR+ F+       + ADYSQIELR+LAH+++   L   +E   DIH   A+E+FGV 
Sbjct: 178 GRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHARTASEVFGVP 237

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           I++VS   RR AK +NF I+YG+S F L+  L+I R +A +YI +YF  +P + +Y+ + 
Sbjct: 238 IDQVSSIQRRDAKAVNFGIVYGLSAFGLSQDLKITRKQAQEYIDKYFETYPKVKKYLNRE 297

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
               ++ G+V T+F R     E+ S     RN  ER A+N+PIQGSAADI + AMI V+ 
Sbjct: 298 VEKGKEEGFVTTMFQRIRPIPELKSSNFMQRNFGERVAMNSPIQGSAADIIKIAMIRVNM 357

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            L+  KL ++++LQIHDEL+ E  + E+     I+   M  A      L VPL ++I   
Sbjct: 358 ELKKRKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAA----KLSVPLSIDIHTG 413

Query: 970 NNWQEE 975
           N+W E 
Sbjct: 414 NSWYEA 419


>gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13]
          Length = 851

 Score =  456 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 176/515 (34%), Positives = 286/515 (55%), Gaps = 30/515 (5%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
            K   + K            + G   D  + +Y+ ++ ++S++I ++ + +     +++ 
Sbjct: 359 KKRSFDAKPVYRYAFAADSGLTGLCFDGAIAAYLHEATKASYEIPALCRSFHLPYEEDMG 418

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            +                     +   +  L   L  KL  E L  + E ++ P+++V++
Sbjct: 419 DTA--------------------DIAALPGLCDALANKLEAEGLTRLMEEIELPLVEVLA 458

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            ME TG+ +DQD +++    +S  +  LEE IY L+G++FN++SPKQLG +LF  L+ P 
Sbjct: 459 SMEHTGVLVDQDGVRRFGDALSGEIRQLEEEIYTLAGKQFNIASPKQLGQVLFEDLEIPH 518

Query: 642 G---AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                KTKTG + T A+ LE++  G  PI+  IL +RQL+K+ STY   L   +     R
Sbjct: 519 PQGKKKTKTGSFSTNAEVLEKLR-GAYPIVSLILRYRQLTKLNSTYVAGLLKTVAPDG-R 576

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +HT +    T TGR++S EPN+QNIP++T+LG+++R+ F++P  + L+ ADYSQIELRIL
Sbjct: 577 IHTCFKQTETRTGRISSTEPNMQNIPVRTELGKEMRKFFVAPRGRILLDADYSQIELRIL 636

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           A++ +   + Q F +  DIH   AA++FGV  E V+PQMR  AK +NF IIYGI  + L+
Sbjct: 637 ANLCEDANMQQAFLSGADIHASTAAQVFGVPREAVTPQMRSAAKAVNFGIIYGIGAYSLS 696

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
             + +   EA  YIKRY   FP + +++ +      + G+V T+FGRR    E+ S    
Sbjct: 697 QDIGVSVREADRYIKRYLENFPRVEQFMTRIVEDAERTGFVSTLFGRRREVPELKSHNKI 756

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            +    R A+N PIQG+AADI + AMI V++ L   +L  +++LQ+HDEL+ E   ++  
Sbjct: 757 QQAAGRRIAMNTPIQGTAADIIKIAMIRVYRRLAREQLDARLILQVHDELIVEAAVQDAD 816

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            A+ I+   ME A     ++ VPL   +    +W 
Sbjct: 817 RAAVILREEMEHA----WDMAVPLTAEVGKGESWY 847



 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 148/305 (48%), Gaps = 8/305 (2%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L  +DG+S + RAFY   +L+    G+P NA+ GF N+  K     + +      AV F
Sbjct: 2   TLLAIDGNSILNRAFYGIRMLTSSK-GVPTNALFGFFNIYLKEAAQVQPDG----VAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  + TFR++    YKANR  +PE L  QL  V+   +  G+  +E +GFEADDI+ T  
Sbjct: 57  DLRSPTFRHKAVASYKANRKGMPEELAQQLAPVKELLRGMGVTVLEAEGFEADDILGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQ 183
            I  + G    I++ D+D +QLV     +     +E      E   +++G  P  ++ L+
Sbjct: 117 RICTEHGEDCVILTGDRDSLQLVGEHVRVDLATNKETIPYTEERFREEYGFAPVHLIDLK 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-QKKRRENILEYAETARL 242
           AL GDS DNI G+PGIG KTA  L+Q YG +E +  +       K     +     +A  
Sbjct: 177 ALMGDSSDNIKGVPGIGPKTATGLIQTYGTIEELYAHLDEAGLTKGAYAKLSGGKASAEE 236

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S+ L  +  D PI        L++ +   + + L  LE  KL++++        +  EP 
Sbjct: 237 SKWLASIVKDAPIPQDPAAYRLKEPDKESVSALLTELELFKLLDKLKLEAAPVQSKPEPD 296

Query: 303 VLDIN 307
              I+
Sbjct: 297 APAIS 301


>gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1]
          Length = 845

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 191/733 (26%), Positives = 358/733 (48%), Gaps = 39/733 (5%)

Query: 246 LVMLRTDVPITIP--LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           L   + D+  T    +E    E     +LI     +  +   + ++            ++
Sbjct: 147 LAKTKEDIFYTPDRFMEDYGFEPI---KLIDLKALMGDSS--DNISGVAGIGEKTASTLI 201

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            +  T EN     E      +        + S + SK  +           +Q       
Sbjct: 202 KEYGTIENLYEKYEDSDLTKSVKTKLANGAESAKESKWLATIIRNAPVDTDIQHYIPSAP 261

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           ++   ++++   ++ + ++KL    S S    +   +     P+  A  +    +  S  
Sbjct: 262 DSAGISRLLTELEMFRLLEKLGI--SVSEGSNSAAAEKEEEAPVIDAKVSPLTGEIISGL 319

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
            +  ++ L         G N  T E  + +  F  +    K   + K        +G  +
Sbjct: 320 AKCSYL-LKDGKLSVRDGDNVYTSEDEAVILDFLGS-DCEKATDDAKAHYRYAMAHGREL 377

Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           +   +D  +  Y+L++  S + I  +  ++  +   E      +    D +S   + +  
Sbjct: 378 KNLKDDAAICGYLLNTSASDYAIEKLCAEYGVHYYSE------NGEFADLLSIELLIK-- 429

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
                        LR  +  E +  + E+++ P+ +V++ ME  GI ID+  ++     +
Sbjct: 430 ------------KLRSVIDKEGMTELLEKIELPLTEVLASMEDIGICIDKQGVEDFGTYL 477

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           ++ +   ++ +YD +G  FN++SPKQLG +LF ++  P+  KTK+G + T A+ LE++  
Sbjct: 478 TEMIEETQQMVYDDAGHSFNIASPKQLGTVLFEEMGLPAKKKTKSG-YSTNAEVLEELR- 535

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D PI+ N+L++RQ +K+ STY   L + I     R+HT++    T TGR++S EPN+QN
Sbjct: 536 NDAPIVDNVLKFRQYTKLNSTYVVGLLDKI-ADDGRIHTWFRQTETRTGRISSTEPNMQN 594

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++T+LG ++R+ F++P  +KL+ ADYSQIELR++AH+     + + F +  DIH   A
Sbjct: 595 IPVRTELGAQMRKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAFNSGEDIHTSTA 654

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           A++F +    V+P+MR  AK +NF IIYGI  F LA  +    ++A  YI  Y  ++  +
Sbjct: 655 AQVFDMPSIMVTPEMRSAAKAVNFGIIYGIGAFSLAKDIGTSVAKAKKYINDYLAKYEKV 714

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
           +E++E T +   ++GYV T+FGR+    E++S    ++   +R A+N P+QG+AAD+ + 
Sbjct: 715 NEFMETTVDNAFKDGYVTTMFGRKRRIPELSSSNKMMQAAGKRIAMNTPVQGTAADLIKI 774

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI+V+  L+   +  K++LQ+HDEL+ E  E +   A+Q++   M+        ++VPL
Sbjct: 775 AMINVYNRLKAEDIDAKLILQVHDELILEASESDAEHAAQLLKEEMQNV----YEMKVPL 830

Query: 963 KVNIKVSNNWQEE 975
            V++   ++W E 
Sbjct: 831 SVDVHTGDSWYEA 843



 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 151/287 (52%), Gaps = 8/287 (2%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L  +DG+S + RAFY   LLS K +G+  NAI+GF N+  K + N   ++     AV F
Sbjct: 2   KLLAIDGNSILNRAFYGIKLLSNK-NGVFTNAISGFMNIYLKHINNLAPDA----VAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  + TFR++    YKANR  +PE L  QLPLV+      G+  +E +G+EADDI+ T +
Sbjct: 57  DLRSPTFRHKAVASYKANRKGMPEELAQQLPLVKELLTLMGVKIVECEGYEADDILGTLS 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVCLQ 183
                      +++ D+D +QL+     +     +E      +  ++ +G  P K++ L+
Sbjct: 117 KACSDNKDECYVLTGDRDSLQLIDDNVTVVLAKTKEDIFYTPDRFMEDYGFEPIKLIDLK 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIKQKKRRENILEYAETARL 242
           AL GDS DNI G+ GIG KTA+ L++EYG +EN+          K  +  +   AE+A+ 
Sbjct: 177 ALMGDSSDNISGVAGIGEKTASTLIKEYGTIENLYEKYEDSDLTKSVKTKLANGAESAKE 236

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           S+ L  +  + P+   ++H I    +   +   L  LE  +L+ ++ 
Sbjct: 237 SKWLATIIRNAPVDTDIQHYIPSAPDSAGISRLLTELEMFRLLEKLG 283


>gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5]
 gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5]
          Length = 856

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 241/982 (24%), Positives = 414/982 (42%), Gaps = 142/982 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVD    +++ +Y    L     G+    ++ F  ++ +L         A      
Sbjct: 2   KTLHLVDTFGLLFKFYYPLRDLQTSK-GINTAWLSAFAKIIHQLYS-----FKADRLIFA 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            +  +   R  + P YKANR   P  L  QLP++    +  G+ A+ ++G+E+DD+IA+ 
Sbjct: 56  LESQS-NHRKTLDPAYKANRIAPPH-LHTQLPIILEWIEQMGLCALSVEGYESDDVIASL 113

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            Y  +     V IIS DKD  QLV     L D    ++  +   ++K+GI P +    Q 
Sbjct: 114 CYAFKD--HFVRIISFDKDFYQLVDSQVVLCDLSSRKESGVTECMQKYGIAPCQFRDYQG 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS D   G+ GIG K A+ LL+++ NLE +  N                    +LS 
Sbjct: 172 LVGDSSDGYKGVEGIGPKNASKLLEKHANLEALYANLD----------------NLKLSP 215

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           KL+                  D N   L   L  L  +  +N+  +T      +      
Sbjct: 216 KLIEALR-------------RDYNQAFLSRELATLNTSLFMNQDLSTKGLFPKS------ 256

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                          +  +  +K  +   L  Q +       PQK+ L            
Sbjct: 257 ------------HPLLKIEAELKHYEMFGLLKQITPKVKPLAPQKINL---------CPP 295

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            ++  KI + +     + +L+                       + ++ L          
Sbjct: 296 QEALEKISSAQGSVTQILELKE---------------------GLGLAVLL--------- 325

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L+    +      +L +E +  L           I +N+K    +L  Y     
Sbjct: 326 ------LNALDQEGEFFCISLNQESIQCLHSL---SQHKLIAYNLKEVCSLLRGYNFPFP 376

Query: 485 -GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
             +EDI ++++ L++      + ++ Q +L     ++            + D++    A 
Sbjct: 377 TCYEDIGILAW-LENCYLEPSLHALGQ-YLGEQGYDLAG----------LEDTEALFKAS 424

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            N+ +IL+ +   +  L  E L  +  +L+ P+++++  M+  G  +D    K +  E  
Sbjct: 425 INARLILKAYKHYKEVLSQE-LWGIAHKLEYPLLELLYTMQGHGFLLDIAYFKVLQQEFK 483

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +NL +LE+++ ++     N++S +Q   +L+  L   S    K     +T +   +    
Sbjct: 484 ENLENLEQSMQNMLSMPLNVNSSRQWAQVLYEHLGLESKGIKKGKIGLSTNEASLKALQA 543

Query: 664 DNP-----------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                         ++  +L +R++ K++STY +           ++HT +    T + R
Sbjct: 544 TYAQSEVRGVCVGVLLTKLLNYREIFKLQSTYVEPFLK--RHTQGKIHTTFYQNKTASSR 601

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIPI+ DLG+KI R FI+     LI  DYSQIELR+LAH ++   L + FE
Sbjct: 602 LSSANPNLQNIPIRHDLGRKIARGFIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFE 661

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   A  +FG   +      R  AK INF +IYG+   +LA  L+I + EA  Y+
Sbjct: 662 QKEDIHLNTATALFGNQAQA----KRPIAKAINFGLIYGMGARKLAQTLQISQEEAKAYM 717

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RYF++FP I  ++E+ K  + Q G V T+ G    +         +     R  +N   
Sbjct: 718 ERYFNKFPTIKNFLEELKARILQEGQVTTLLGHVRRF-SFKQASPKLHADYLREGVNTLF 776

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ + AM+++++  E      KML+Q+HDEL+ EV E E     Q I   ME   
Sbjct: 777 QGSASDLVKLAMLAIYQKYESRA-DIKMLVQVHDELILEVSEIEARELQQEIKTLMEN-- 833

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  +++NW +
Sbjct: 834 --IYPLRVPLECHASIASNWAD 853


>gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
 gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
          Length = 856

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 241/982 (24%), Positives = 415/982 (42%), Gaps = 142/982 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVD    +++ +Y    L     G+    ++ F  ++ +L         A      
Sbjct: 2   KTLHLVDTFGLLFKFYYPLRDLQTSK-GINTAWLSAFAKIIHQLYS-----FKADRLIFA 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            +  +   R  + P YKANR   P  L  QLP++    +  G+ A+ ++G+E+DD+IA+ 
Sbjct: 56  LESQS-NHRKTLDPAYKANRIAPPH-LHTQLPIILEWIEQMGLCALSVEGYESDDVIASL 113

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            Y  +     V IIS DKD  QLV     L D    ++  +   ++K+GI P +    Q 
Sbjct: 114 CYAFKD--HFVRIISFDKDFYQLVDSQVVLCDLSSRKESGVTECMQKYGIAPCQFRDYQG 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS D   G+ GIG K A+ LL+++ NLE +  N                 +  +LS 
Sbjct: 172 LVGDSSDGYKGVEGIGPKNASKLLEKHANLEALYANL----------------DNLKLSP 215

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           KL+                  D N   L   L  L  +  +N+  +T      +      
Sbjct: 216 KLIEALR-------------RDYNQAFLSRELATLNTSLFMNQDLSTKGLFPKS------ 256

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
                          +  +  +K  +   L  Q +       PQK+ L            
Sbjct: 257 ------------HPLLKIEAELKHYEMFGLLKQITPKVKPLAPQKINL---------CPP 295

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            ++  KI + +     + +L+                       + ++ L          
Sbjct: 296 QEALEKISSAQGSVIQILELKE---------------------GLGLAVLL--------- 325

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                 L+    +      +L +E +  L           I +N+K    +L  Y     
Sbjct: 326 ------LNALDQEGEFFCISLNQESIQCLHSL---SQHKLIAYNLKEVCSLLRGYNFPFP 376

Query: 485 -GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
             +EDI ++++ L++      + ++ Q +L     ++            + D++    A 
Sbjct: 377 TCYEDIGILAW-LENCYLEPSLHALGQ-YLGEQGYDLAG----------LEDTEALFKAS 424

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            N+ +IL+ +   +  L  E L  +  +L+ P+++++  M+  G  +D    K +  E  
Sbjct: 425 INARLILKAYKHYKEVLSQE-LWGIAHKLEYPLLELLYTMQGHGFLLDIAYFKVLQQEFK 483

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +NL +LE+++ ++     N++S +Q   +L+  L   S    K     +T +   +    
Sbjct: 484 ENLENLEQSMQNMLSMPLNVNSSRQWAQVLYEHLGLESKGIKKGKIGLSTNEASLKALQA 543

Query: 664 DNP-----------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                         ++  +L +R++ K++STY +           ++HT +    T + R
Sbjct: 544 TYAQSEVRGVCVGVLLTKLLNYREIFKLQSTYVEPFLK--RHTQGKIHTTFYQNKTASSR 601

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S  PNLQNIPI+ DLG+KI R FI+     LI  DYSQIELR+LAH ++   L + FE
Sbjct: 602 LSSANPNLQNIPIRHDLGRKIARGFIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFE 661

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH   A  +FG   +      R  AK INF +IYG+   +LA  L+I + EA  Y+
Sbjct: 662 QKEDIHLNTATALFGNQAQA----KRPIAKAINFGLIYGMGARKLAQTLQISQEEAKAYM 717

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           +RYF++FP I  ++E+ K  + Q G V T+ G    +         +     R  +N   
Sbjct: 718 ERYFNKFPTIKNFLEELKARILQEGQVTTLLGHVRRF-SFKQASPKLHADYLREGVNTLF 776

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA+D+ + AM+++++  E      KML+Q+HDEL+ EV E E     Q I   ME   
Sbjct: 777 QGSASDLVKLAMLAIYQKYESRA-DIKMLVQVHDELILEVSEIEARELQQEIKTLMEN-- 833

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                LRVPL+ +  +++NW +
Sbjct: 834 --IYPLRVPLECHASIASNWAD 853


>gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3]
          Length = 857

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 172/528 (32%), Positives = 281/528 (53%), Gaps = 30/528 (5%)

Query: 451 SYLKKFFENEHFLKIGHN-IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           + L +  +N        N        +   G       D  L +Y+LD+  S + I+ + 
Sbjct: 358 AELLRLLDNADVTLDVFNSAPLYAKAMAAGGWGSSIVWDGKLAAYLLDASASKYQISELI 417

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
             +             ++       D      A   +++    +  ++ ++       +Y
Sbjct: 418 PAY----------KAAAAFTCTDYPD------AGRLADL----FARMKAEITACGEDALY 457

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQ 628
             ++ P+  V++ M  TG+ +D+D ++Q   ++ + L  +   I+  +G   FN +SPKQ
Sbjct: 458 NEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREELEQVLTRIHMETGSATFNPNSPKQ 517

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG++LF  +  P G KT+ G W T A+ LE +   + P+++++L++R   K+ STY + L
Sbjct: 518 LGEMLFDTMGLPHGKKTQRG-WSTDAETLESLR--EYPLVEDVLQYRAYQKLNSTYVEGL 574

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
              I +   R+H+ ++     TGRL+S  PNLQNIPI+T+LG ++R  F++ P   L+ A
Sbjct: 575 LKVIGEDG-RIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVAKPGCVLVDA 633

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRILAHI     + Q F N  DIHR  AA+I+G+   +V+P++R  AK INF I
Sbjct: 634 DYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGI 693

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YG   + L+  + +   EA  ++K Y   FP +  Y++KT    + NGYV T+FGRR  
Sbjct: 694 MYGKGAYSLSKDIGVTVKEADAFLKNYLAAFPNVSGYMDKTIADAKANGYVSTLFGRRRT 753

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             E+ S   ++R   ER A N PIQG+AAD+ + AM+ V K L D K+A++++L +HDEL
Sbjct: 754 LPELASTNFNVRASGERMARNTPIQGTAADVIKLAMVRVWKRLRDEKMASRLILTVHDEL 813

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           + E PE E   A++I+   ME      +   VPL  ++    NW E +
Sbjct: 814 IVEAPEVEAEQAARILREEME----GCVQYAVPLSTDVHAGKNWLEAH 857



 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 105/292 (35%), Positives = 158/292 (54%), Gaps = 14/292 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S   RAFY   LL+ K DG   NAI GF N+L  LL+  + +      AV F
Sbjct: 2   RLLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIYGFLNILLSLLKECQPDE----VAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++Y  YKA R  +PE L  Q+P+++      G   +  +G+EADDI+ T  
Sbjct: 57  DLKAPTFRHKMYDGYKATRHAMPEELAQQMPVLKQLLADLGYRTVTAEGWEADDILGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
                      + + D+D +QLVS +T       +    K   +D + + +K+G+ P+++
Sbjct: 117 AACASRKDDCFLATGDRDSLQLVSESTTVLLAATVMGRSKTVVMDEDAIQEKYGLAPKQL 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYA 237
           + +++L GD+ DNIPG+ GIG KTA  L+Q +G+LE +  N    RIK  K+RE++LE  
Sbjct: 177 IEVKSLMGDTSDNIPGVKGIGEKTALSLVQTFGSLEGVYQNIDDKRIKP-KQREHLLEDK 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
             A LS  L  +RTD PI        + + N P  +  L+ LE   LI R  
Sbjct: 236 PMAELSHTLGTIRTDAPIDTAEGSYTVGEGNKPAAVRLLQELEIHSLIPRFG 287


>gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 864

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/528 (32%), Positives = 278/528 (52%), Gaps = 30/528 (5%)

Query: 451 SYLKKFFENEHFLKIGHNI-KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           + L +  +N        N        +   G       D  L +Y+LD+  S + I+ + 
Sbjct: 365 ADLVRLLDNADVTLEVFNAAPLYAKAMAAGGWGSSIVWDGKLAAYLLDASASKYQISELT 424

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
             +             ++       D      A   +++       ++ ++       +Y
Sbjct: 425 ASY----------RAAAAFTCADYPD------AGRLADLFC----KMKAEITACGEDSLY 464

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQ 628
             ++ P+  V++ M  TG+ +D+D ++Q   ++   L  +   I+  +G   FN +SPKQ
Sbjct: 465 NEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLRTELEQVLTRIHMETGSASFNPNSPKQ 524

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG++LF  +  P G KT+ G W T A+ LE +   D P++++IL++R   K+ STY + L
Sbjct: 525 LGEMLFDTMGLPHGKKTQRG-WSTDAETLESLR--DYPLVEDILQYRAYQKLNSTYVEGL 581

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
              I +   R+H+ ++     TGRL+S  PNLQNIPI+T+LG ++R  FI+ P   L+ A
Sbjct: 582 LKVIGEDG-RIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFIAKPGCVLVDA 640

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRILAHI     + Q F N  DIHR  AA+I+G+  E+V+ ++R  AK INF I
Sbjct: 641 DYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINFGI 700

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YG   + LA  + +   EA  ++K Y   FP +  Y++KT    +  GYV T+FGRR  
Sbjct: 701 MYGKGAYSLAKDIGVSVKEADAFLKNYLAAFPKVSGYMDKTIADAKACGYVSTLFGRRRA 760

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             E+ S   ++R+  ER A N PIQG+AAD+ + AM+ V K L + K+ ++++L +HDEL
Sbjct: 761 LPELASSNFNVRSSGERMARNTPIQGTAADVIKLAMVRVWKRLRNEKMESRLILTVHDEL 820

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           + E P+ E   A+QI+   ME      +   VPL  ++    NW E +
Sbjct: 821 IVEAPQAEAEKAAQILREEME----GCVQYAVPLSTDVHAGKNWLEAH 864



 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 163/311 (52%), Gaps = 15/311 (4%)

Query: 1   MQKEN---HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           MQ  N    L ++DG+S   RAF+   LL+ K DG   NAI GF N+L  LL+    +  
Sbjct: 1   MQWRNTTMRLLVIDGNSIANRAFFGIKLLTTK-DGRYTNAIYGFLNILLSLLKECEPDE- 58

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
               AV FD  A TFR+++Y  YKA R  +PE L  Q+P+++      G   +  +G+EA
Sbjct: 59  ---VAVAFDLKAPTFRHKMYDGYKATRHGMPEELAQQMPVLKELLADLGYRTVTAEGWEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKK 171
           DDI+ T             + + D+D +QLVS TT       +    K   +D++ + +K
Sbjct: 116 DDILGTLAAACAARKDDCFLATGDRDSLQLVSDTTTVLLAATVMGRSKTVTMDVDAIQEK 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIKQKKRR 230
           +GI P +++ +++L GD+ DNIPG+ GIG KTA  L+Q +G LE +  +   ++ + K+R
Sbjct: 176 YGIQPRQLIEVKSLMGDASDNIPGVKGIGEKTALTLVQNFGTLEGVYEHIDDKLIKPKQR 235

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           E++LE  E A+LS  L  +RTD PI        + + N    +  L+ LE   LI R   
Sbjct: 236 EHLLECREMAQLSHTLGTIRTDAPIDTAEGTYTVGEGNKAEAVRLLQELEIHSLIPRFGL 295

Query: 291 TYDCDAANIEP 301
                AA  E 
Sbjct: 296 DGIAPAAPEEE 306


>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
 gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
 gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
          Length = 875

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/526 (40%), Positives = 302/526 (57%), Gaps = 35/526 (6%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              ++   KI +++K            +   ED+ LM Y L +G S  ++          
Sbjct: 380 LLTDKSIKKITYSLKPLLKFYANQSHDITAIEDLELMQYALSAGLSQKNL---------- 429

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK----LIVEKLLHVYER 571
                           ++      E+ I  S  I+  ++ L  +    L   K   +Y  
Sbjct: 430 --------------FKEVLKETWIENIIIASAKIVINFIALYKQTIWELKDNKTFRLYSN 475

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +D P+  ++ +ME  GI +D + LKQ+SAE    +L LEE I+ LSG KFN+ SPKQLG+
Sbjct: 476 IDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKFNIGSPKQLGE 535

Query: 632 ILFTKLKFPSGA-KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           ILF K++ P G    K   + T A+ LE+++     I   +L WRQL+K+K+TY DSLP 
Sbjct: 536 ILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPK 595

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            I+  T RVHT +   ST TGRL+S EPNLQN+PI++  G +IR+AFI+    KLISADY
Sbjct: 596 QIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNQIRKAFIAEEGYKLISADY 655

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELRIL+HIA I  L Q F N  DIH   A +IF +   +++ + RR AK INF IIY
Sbjct: 656 SQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIY 715

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS F LA QL +   EA++YIK+YF  + G+ EY+E+TK F   NGYV   FGR+    
Sbjct: 716 GISAFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVP 775

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            I+  K  ++   ERAAINAPIQG+ ADI + AMI++ + +E  KL T+++LQIHDEL+F
Sbjct: 776 LIHDKK--LKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLF 833

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E P +E+   + II   ME +     N+ VP+   I+  NNW E +
Sbjct: 834 EAPIDEVEIITPIIKKIMENST----NMAVPIITEIRAGNNWMEIH 875



 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 128/328 (39%), Positives = 183/328 (55%), Gaps = 6/328 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLT-SPKGEPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+G   +K+ 
Sbjct: 116 IATFATKTAALGAHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E A
Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D    N  
Sbjct: 236 LISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLDIKI-NDH 294

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKT 328
             + D   TE K I    E+       T
Sbjct: 295 KEIADNKVTEIKEINNANELADFAKEAT 322


>gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
 gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
          Length = 878

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 182/492 (36%), Positives = 270/492 (54%), Gaps = 23/492 (4%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           + DI L +Y+L+S        ++A  +L            SS+P  K  D+    H +  
Sbjct: 409 YFDIGLAAYLLNSNTDVFAYDALADTYL-----------ASSLPETKDDDAAAAVHVLVA 457

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             ++      LR  L  +    VY ++D P++  ++ ME  G Q+D D L  + +     
Sbjct: 458 PRLV----NALREALDKDGSADVYYKIDLPLVSTLTLMERVGAQLDVDALAAMGSATRGE 513

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           + SL  +I++L+GE+FN+ SPKQLG ILF KL  P G KT+TG     A    +     +
Sbjct: 514 IDSLRAHIHELAGEEFNVDSPKQLGVILFDKLGLPHGKKTRTGYSTNAAT--LKKLQSIH 571

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           PI   +L +R+L+K+ STY D+LP        RVHT ++   T TGRL+S +PNLQNIP+
Sbjct: 572 PIADEVLRYRELAKMSSTYIDALPRM-RADDGRVHTHFNQTVTTTGRLSSSDPNLQNIPV 630

Query: 726 KTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +TD G++IR  F+        +SADYSQIELR+LAH++    L   F +  D H   AA 
Sbjct: 631 RTDFGRRIRECFVPLHEGDVFVSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAAR 690

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F V +++V+PQ+R  AK +NF I+YG   F LA  L I   EA D I RYF  +PG+  
Sbjct: 691 VFDVPVDEVTPQLRSRAKAVNFGIVYGQQAFGLAQSLDIGFKEAQDMIDRYFEAYPGVRS 750

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y++KT    +Q GY  T+FGR+ H  E+    +  R   ER A+N P+QGSAADI + AM
Sbjct: 751 YLDKTVEDAKQTGYAVTMFGRKRHIPELKMRNAVQRGFGERTAMNHPMQGSAADIIKLAM 810

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
             V + L +    ++++LQ+HDEL   VP +E+   S ++   M       + L+VPL V
Sbjct: 811 NEVQRRLIEDGFESQLMLQVHDELDLSVPADELERLSDMVREVM----STIVELKVPLLV 866

Query: 965 NIKVSNNWQEEN 976
           ++    NW   +
Sbjct: 867 DVSSGPNWAAAH 878



 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 112/483 (23%), Positives = 199/483 (41%), Gaps = 23/483 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++DG+S +YRA++A P      DG P NA+ GF  M  KL + ++ ++        
Sbjct: 3   KKIAVIDGNSLMYRAYHAVPPTMNAPDGTPTNAVFGFIAMFLKLYEMAKPDA----VICA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR +    YKA RP + + L  Q P++    +A  +P + ++G+E DDI+ T 
Sbjct: 59  FDAGKPEFRMKALETYKAQRPPMDDELRVQFPVIESLLEAMSVPVVRLKGWEGDDILGTI 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
               E+ G+   +I+ DKD  QLV+  T +  T K            V +++G+ PE+  
Sbjct: 119 AARDEELGYETLLITGDKDAYQLVTDLTRVVTTKKGITDVAIYGPAEVEERYGVTPEQFP 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS DNIPG+PGIG KTAA LLQ YG ++ I  N  ++K K+  EN+    + A
Sbjct: 179 DFLGLKGDSADNIPGVPGIGDKTAAKLLQNYGTMDGIYENLDKLKGKQL-ENLTNNRDVA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +SR++  +  DV + + LE       +   +     A+ F   + ++      +A    
Sbjct: 238 FISREVATIVRDVDLEVDLEAAAFPAFDAQAVTDAFHAVRFNSHLQKMLGLAGQEAPVTA 297

Query: 301 PVVLDINTTE---NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
              +++   +       A       D     +    + DQ S  +  +T      E + K
Sbjct: 298 AAAIELPKADVLTGAEAAEGLAAAIDAGQMIALEFVVPDQASLFDDFKTMFAGTAEAVFK 357

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA---SFKIITDTMDAFHSK--PIAIAIS 412
            +   +       +   +     V+K    G     +        D  H+    I +A  
Sbjct: 358 FTDEEVAPAFGRVVREARFCALDVKKTLQEGYPADTAKDAELTADDVRHADYFDIGLAAY 417

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGK------NTLTKEILSYLKKFFENEHFLKIG 466
            L+   D           L+    +             +   +++ L++  + +    + 
Sbjct: 418 LLNSNTDVFAYDALADTYLASSLPETKDDDAAAAVHVLVAPRLVNALREALDKDGSADVY 477

Query: 467 HNI 469
           + I
Sbjct: 478 YKI 480


>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
 gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
          Length = 872

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 220/522 (42%), Positives = 303/522 (58%), Gaps = 30/522 (5%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              ++   KI +++K            +   ED+ LM Y L +G S  ++   A K    
Sbjct: 380 LLADKSIKKITYSLKPLLKFYANQSHKITAIEDLELMQYALSAGLSQKNLFEEALK---- 435

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                              D+ + E A   +N I      +   L   K   +Y  +D P
Sbjct: 436 ------------------EDNIINESAKIVANFISLYKQTILA-LKDNKAFRLYSDIDLP 476

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  ++ +ME TGI++D + L Q+SAE    +  LEE I+ LSG KFN+ SPKQLG ILF 
Sbjct: 477 ICFILDKMEKTGIKVDANYLNQLSAEFGAEISILEEEIFALSGTKFNIGSPKQLGKILFE 536

Query: 636 KLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           K++ P G    K   + T A+ LE+++     I   +L WRQL+K K+TY DSLP  I+ 
Sbjct: 537 KMQLPFGKAAAKAISYSTAAEILEKLSEHGYNIADLLLRWRQLTKFKNTYTDSLPKQIDN 596

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            T+RVHT +   ST TGRL+S EPNLQNIPI++  G KIR+AFI+    KLISADYSQIE
Sbjct: 597 ITRRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSREGNKIRQAFIAEEGYKLISADYSQIE 656

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRIL+HIA I  L Q F N  DIH   A +IF +   +++ + RR AK INF IIYGIS 
Sbjct: 657 LRILSHIANIDTLKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISA 716

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F LA QL +  SEA++YIK+YF  + G+ EY+E+TK F   NGYV   FGR+     I+ 
Sbjct: 717 FGLAKQLNVSNSEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVINFFGRKCFIPLIHD 776

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
            K  ++   ERAAINAPIQG+ ADI + AMI++ + +  +KL T+++LQIHDEL+FEVPE
Sbjct: 777 KK--LKQFAERAAINAPIQGTNADIIKIAMINLDQEIAKNKLKTRLVLQIHDELLFEVPE 834

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +E+   + II   ME +     N+ VP+   I+  NNW E +
Sbjct: 835 DEVELVTPIIKKIMENST----NMDVPIITEIRAGNNWMEIH 872



 Score =  330 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 123/320 (38%), Positives = 184/320 (57%), Gaps = 6/320 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG   ++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGLVFRAYYAQQHLT-SPKGEPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+ IYP+YKANRP  PE L+ QLPLVR       +P +E  G+EADDI
Sbjct: 56  VAVVFDSGGNNFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNLPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V +IS+DKDL+QL+S    +YD +K + I  + ++KK+G   +K+ 
Sbjct: 116 IATFAAKTAALGEDVVVISSDKDLLQLMSENIKIYDPLKGKYITEDDIVKKFGTTSDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + ALTGD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E A
Sbjct: 176 EVMALTGDRSDNIPGVPSIGPKTASSLITQFGSIENIFNSLDQVSSVKQRETLQNSKEDA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S +L+ L +++ +   L +L     N  +L  FL+   F  L  R    +D    + +
Sbjct: 236 LISWQLIGLDSNIDLDFQLNNLEWLPPNSDKLTEFLQKYGFKSLYKRAENLFDIKINDHK 295

Query: 301 PVVLDINTTENKGIAIETEI 320
            +V D   TE K I    E+
Sbjct: 296 EIV-DNKVTEEKEINNAGEL 314


>gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
 gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
          Length = 875

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 220/531 (41%), Positives = 307/531 (57%), Gaps = 35/531 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
             +     ++   KI +++K           ++   ED+ L+ Y L +G S  ++   AQ
Sbjct: 375 DIISNLLTDKSIKKITYSLKPLLKFYANQSHAITAIEDLELIQYALSAGLSQKNLFEEAQ 434

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK----LIVEKLL 566
           K                          V E+ I  S  I+  ++ L  +    L   K  
Sbjct: 435 K------------------------ETVIENIINESAKIVINFISLYKQKILELKDNKAF 470

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +Y  +D P+  ++ +ME  GI++D + LKQ+SAE    +  LEE I+ LSG KFN+ +P
Sbjct: 471 RLYSNIDLPICFILDKMEKVGIKVDANYLKQLSAEFGTEIARLEEEIFALSGTKFNIGAP 530

Query: 627 KQLGDILFTKLKFPSGA-KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           KQLG+ILF K++ P G    KT  + T  + L++++     I   +L WRQL+K+K+TY 
Sbjct: 531 KQLGEILFEKMQLPFGKASAKTNSYSTGVEILKKLSKHGYNIADLLLRWRQLTKLKNTYT 590

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           DSLP  I+  T+RVHT +   ST TGR++S EPNLQN+PI++  G KIR+AFI     KL
Sbjct: 591 DSLPKQIDNITRRVHTTFLQTSTTTGRISSQEPNLQNVPIRSSEGNKIRQAFIPEKGYKL 650

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ISADYSQIELRIL+HIA I  L Q F N  DIH   A +IF +  +K++ + RR AK IN
Sbjct: 651 ISADYSQIELRILSHIANIDALKQAFTNKDDIHTQTACQIFNLPKDKLTSKHRRKAKAIN 710

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F IIYGIS F LA QL +  SEAA+YIK+YF  + G+ EYIE+TK FV  NGYV   FGR
Sbjct: 711 FGIIYGISAFGLAQQLNVTNSEAAEYIKKYFAEYKGVQEYIEQTKAFVSSNGYVTNFFGR 770

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           +     I+     ++   ERAAINAPIQG+ ADI + AMI++ + +E  KL T+++LQIH
Sbjct: 771 KCFLPSIH--NKKLKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKLKLKTRLVLQIH 828

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           DEL+FE P +EI     II   ME +     N+ VP+   I+  NNW E +
Sbjct: 829 DELLFEAPTDEIELVIPIIKKIMENST----NMDVPIITEIRAGNNWMEIH 875



 Score =  333 bits (854), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 125/324 (38%), Positives = 183/324 (56%), Gaps = 6/324 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+N L L+DG  F++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTKKNTLLLIDGYGFVFRAYYAQQPLT-SPKGKPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR+ IYP+YKANRP  PE L+ QLPLVR    +   P +E  G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHHIYPEYKANRPPPPEDLIIQLPLVRDVASSLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL++    +YD +K +    + V+KK+G    K+ 
Sbjct: 116 IATFATKTAALGEDVVIISSDKDLLQLMNENIKIYDPLKGKYSTEDDVVKKFGTTANKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  +I   K+RE +    E A
Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITQFGSIENIFNSLDQISSVKQRETLQNSKEAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S +L+ L ++V +   L +L     N  +L  FL+   F  L  R    +D    N  
Sbjct: 236 LISWQLIGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYRRAENLFDIKI-NEH 294

Query: 301 PVVLDINTTENKGIAIETEIDRDT 324
             ++D    E K I+ + E++   
Sbjct: 295 KEIVDNKVAEIKEISNKIELENFA 318


>gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58]
 gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58]
          Length = 878

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 199/607 (32%), Positives = 319/607 (52%), Gaps = 31/607 (5%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
              + ++        + + D + +F  K +AIA + +  K   S  ++   I LS     
Sbjct: 292 DAVLSEINVSVVVEPEELIDVLQSFEKKSLAIAAAYV-GKHLVSLALQ--GIALSDGNRV 348

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496
                    +E+L  L KFF  E     G+NIK D   L   GI +     D+ L  +++
Sbjct: 349 VYVELKQRPEELLEILCKFFSREDLSFYGYNIKRDLHALRNAGIVIYNVSCDLALAEHLI 408

Query: 497 DSGRS--------SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             G          SH  A++A +++             ++P+ ++ ++  +++  E   +
Sbjct: 409 HGGARTSFQSLLVSHGWAAVAARYVKEW-------GHHALPLVQLPENP-EKYFGELVAL 460

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           + Q+   L  +L  ++L  V+  L+ P+  V+  ME  G+ +D   L  +   + ++L  
Sbjct: 461 LPQIKESLLEELQKKQLTDVFFNLEMPLEHVLFSMERNGMPLDSKKLVSLEHSLEQDLAI 520

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           L E IY L+GE FN+ SPKQL +IL+ KL      K K+     T  ++ +    ++ II
Sbjct: 521 LTEEIYTLAGEPFNIKSPKQLANILYNKLGITPLDKAKS-----TRAEVLEALREEHKII 575

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           + +L +R L K+ STY  +LP  +  +TQR+H  +    T TGRLA  +PNLQNIP ++ 
Sbjct: 576 EKLLMFRALEKLLSTYVKALPRQVAPQTQRIHATFEQMGTATGRLACRDPNLQNIPKRSS 635

Query: 729 LGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            G  +R AF+ P  T   ++ADYSQIELR+LAH+++   L   F    DIH   A+++F 
Sbjct: 636 RGLSLREAFLVPCETVSFLAADYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFS 695

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V +++V+ Q R +AKT+NF IIYG   + L+  L+IP SEA + I+ YF R+ G+  ++E
Sbjct: 696 VPLDQVTKQQRMYAKTVNFGIIYGQQAYGLSKILKIPLSEAQELIQAYFERYSGVARFVE 755

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           +T      +  V T+ GR    D  +     IR  + R A+N  IQGSAA++ + AM+ +
Sbjct: 756 ETIAAASHDLKVTTMLGRERVIDNWDE-HPGIRASSGRLAVNTRIQGSAAELIKCAMLEI 814

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
            K ++D KL ++MLLQIHDEL+FEVP+ E+     ++   ME A      L VPL VNI 
Sbjct: 815 SKEIQDRKLQSRMLLQIHDELIFEVPDGEMQEMCALVQEKMEAAM----TLTVPLVVNIL 870

Query: 968 VSNNWQE 974
           +  NW E
Sbjct: 871 IGKNWAE 877



 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 135/601 (22%), Positives = 253/601 (42%), Gaps = 55/601 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LF++D S F++RA++A P + +   G     + GF   + KL++    +    +   +
Sbjct: 10  KRLFVLDASGFVFRAYFALPEM-KTPLGERAQVVFGFVRSINKLIKEFSPQ----YMVAV 64

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R EIY +YK+NR K  E L  Q+ LV+      G+  IE+   EADD+IA+
Sbjct: 65  FDGPNNKQSRQEIYTEYKSNREKKVEDLSIQIALVKEYCVLRGLAHIEVDSVEADDVIAS 124

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCL 182
            T  A  EG+ V I + DKDL+QL  P   L++  KE+     E V++++G+PP+ +   
Sbjct: 125 ITTRAVHEGYDVCICTADKDLLQLAGPQVGLWNPWKEQGIFGEEEVLERYGVPPKCIPDY 184

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD+ DNIPG+ G G K AA LLQ++G++E IL N   IK    +  + E  E  +L
Sbjct: 185 LALVGDTSDNIPGVKGCGPKKAAALLQQFGSVEGILENLEHIKGS-NQTMLKEQKEILQL 243

Query: 243 SRKLVMLRTDVPITIPLEHLILED--CNGPRLISFLKALEFTKLINR----VATTYDCDA 296
           S+KL +L  +V +   +  L   +   +  +L  F     F  L++R    ++       
Sbjct: 244 SKKLAVLDHNVSLPCSIASLTFPNLSVDEEKLQVFYMQQGFKTLVHREDAVLSEINVSVV 303

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLE 353
              E ++  + + E K +AI         +  +      S  ++   +  +Q P++L   
Sbjct: 304 VEPEELIDVLQSFEKKSLAIAAAYVGKHLVSLALQGIALSDGNRVVYVELKQRPEELLEI 363

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD-----------TMDAF 402
             +  S+  ++   Y       +I++ +  L   G   + +  D              +F
Sbjct: 364 LCKFFSREDLSFYGY-------NIKRDLHALRNAGIVIYNVSCDLALAEHLIHGGARTSF 416

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIF-IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
            S  ++   + +  +    +    +  + L  +  +       L  +I   L +  + + 
Sbjct: 417 QSLLVSHGWAAVAARYVKEWGHHALPLVQLPENPEKYFGELVALLPQIKESLLEELQKKQ 476

Query: 462 FLKIGHNI-KYDKLVL---HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
              +  N+    + VL    R G+ +   + + L   +        D+A + ++  +   
Sbjct: 477 LTDVFFNLEMPLEHVLFSMERNGMPLDSKKLVSLEHSL------EQDLAILTEEIYTLAG 530

Query: 518 KEILKSRKSSIP------IDKISDSQVQEHAIENSNVILQLWLLLRPKL---IVEKLLHV 568
           +         +       +      + +    E    + +   ++   L    +EKLL  
Sbjct: 531 EPFNIKSPKQLANILYNKLGITPLDKAKSTRAEVLEALREEHKIIEKLLMFRALEKLLST 590

Query: 569 Y 569
           Y
Sbjct: 591 Y 591


>gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
 gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
          Length = 845

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/500 (35%), Positives = 280/500 (56%), Gaps = 28/500 (5%)

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
              G+      D+ L +Y+LD  + S+    I Q+                        +
Sbjct: 374 AWEGLPYARCFDLSLGAYLLDPEQRSYSWDKIRQRH----------------------QN 411

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           Q++ H   N+  I++   +LR +L   +LL + + ++ P++ V+ +ME  G+ ID +  +
Sbjct: 412 QLETHPDNNALSIMETGRILRRELANSELLSLMQDIELPLVGVLVRMEKRGLAIDLEAFR 471

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +   E+ + L  L   IYDL+G++FNL S +Q+  +LF  L+ P+G KT  G   T++Q 
Sbjct: 472 RFLDEVQEELDGLTHEIYDLAGQEFNLRSSQQMAQVLFGDLELPTGRKTPGGVPSTSSQV 531

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE +    +PII  IL +R L K++STY + LP  ++  T R+HT ++  +T TGRL+S 
Sbjct: 532 LEGLR-NVHPIIPKILRFRTLEKLRSTYLEPLPQKVD-DTSRLHTHFNQLATATGRLSSS 589

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            PNLQNIPI+ + G ++R+ F++P   +L++ADYSQIELR+LAH+++   L + F    D
Sbjct: 590 GPNLQNIPIRGEFGPRMRQCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLLEAFTQGED 649

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AA I  +  E V  + RR AKTINF ++YG+ P +L+ +L I  +EA  +I+RYF
Sbjct: 650 IHSRTAAVIMDIADEHVDSEARRQAKTINFGLLYGMGPQKLSRELGISLNEAKTFIQRYF 709

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R  G+  + E+ ++  +Q+GYV T  GRR    +INS  +++     R A+N  +QGSA
Sbjct: 710 DRLQGVSAFYERIEDAAKQHGYVTTWAGRRRLLPDINSRNANLAQQARRMAVNTVVQGSA 769

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI      E      ++ LQ+HDEL+ EVP E   TA + +   M        
Sbjct: 770 ADIIKMAMIEADGDTELADAGARLTLQVHDELLLEVPREAAETAGKRLAAIMASVA---- 825

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
           ++ VPL V+  V  NW E +
Sbjct: 826 DMDVPLAVDWGVGTNWAEAH 845



 Score =  261 bits (666), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 99/283 (34%), Positives = 152/283 (53%), Gaps = 9/283 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L+L+DGS+++Y+AFYA P L R  DG P NA+     +L +LL    +E    + A   
Sbjct: 14  PLYLIDGSAYLYKAFYAYPDLQR-SDGFPTNALY----ILTRLLLKLLQEEQPVYAAFFL 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E+ P YK +RP++PE L  Q+  ++    A G+P    +G EADD+IA  +
Sbjct: 69  DGKGPTFRHELLPSYKGHRPRMPEDLAAQIGPLKTLLDALGLPNEVPEGLEADDMIACLS 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT--VKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                +   + II  DKDL Q ++P  C++D    +E+ +  +   K++G  P      Q
Sbjct: 129 RRFRDQ-RPIVIIGGDKDLNQCLAPQVCVWDPSGKQEKLVTADSFAKQFGFAPTIWPDYQ 187

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+PG+G KTA   L+ +  LE +  N  R+   K +E ++ + +     
Sbjct: 188 ALVGDSSDNIPGVPGVGPKTAEKWLKRFPGLETLRDNRERL-SVKEQEKLVPHLDDIFTY 246

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           R+L  LRTD      L+   ++  +   L SFL+  EF  L+ 
Sbjct: 247 RQLTRLRTDCCAERDLDGFAVQGQDTGALRSFLQEYEFRSLLR 289


>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
 gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
 gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
          Length = 875

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 214/526 (40%), Positives = 301/526 (57%), Gaps = 35/526 (6%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              ++   KI +++K            +   ED+ LM Y L +G S  ++          
Sbjct: 380 LLTDKSIKKITYSLKPLLKFYANQSHDITAIEDLELMQYALSAGLSQKNL---------- 429

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK----LIVEKLLHVYER 571
                           ++      E+ I  S  I+  ++ L  +    L   K   +Y  
Sbjct: 430 --------------FKEVLKETWIENIIIESAKIVINFIALYKQTIWELKDNKTFRLYSN 475

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +D P+  ++ +ME  GI +D + LKQ+SAE    +L LEE I+ LSG KFN+ SPKQLG+
Sbjct: 476 IDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKFNIGSPKQLGE 535

Query: 632 ILFTKLKFPSGA-KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           ILF K++ P G    K   + T A+ LE+++     I   +L WRQL+K+K+TY DSLP 
Sbjct: 536 ILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPK 595

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            I+  T RVHT +   ST TGRL+S EPNLQN+PI++  G +IR+AFI+    KLISADY
Sbjct: 596 QIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNQIRKAFIAEEGYKLISADY 655

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           SQIELRIL+HIA I  L Q F N  DIH   A +IF +   +++ + RR AK INF IIY
Sbjct: 656 SQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIY 715

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           GIS F LA QL +   EA++YIK+YF  + G+ EY+E+TK F   NGYV   FGR+    
Sbjct: 716 GISAFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVP 775

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
            I+  K  ++   ERAAINAPIQG+  DI + AMI++ + +E  KL T+++LQIHDEL+F
Sbjct: 776 LIHDKK--LKQFAERAAINAPIQGTNTDIIKIAMINLDQEIEKRKLKTRLVLQIHDELLF 833

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E P +E+   + II   ME +     N+ VP+   I+  NNW E +
Sbjct: 834 EAPIDEVEIITPIIKKIMENST----NMAVPIITEIRAGNNWMEIH 875



 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 127/328 (38%), Positives = 183/328 (55%), Gaps = 6/328 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M ++N L L+DG  F++RA+YA   L+    G PV A+ GF +ML KLL + + +    H
Sbjct: 1   MTQKNTLLLIDGYGFVFRAYYAQQPLT-SPKGEPVGALYGFTSMLLKLLSDFKPK----H 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV+FD     FR++IYPDYKANRP  PE L+ QLPLVR        P +E  G+EADDI
Sbjct: 56  VAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL++    +YD +K + I  + V+KK+G   +K+ 
Sbjct: 116 IATFATKTAALGAHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  ++   K+RE +    E A
Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S +L+ L ++V +   L +L     N  +L  FL+   F  L  RV    D    N  
Sbjct: 236 LISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLDIKI-NDH 294

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKT 328
             + D   TE K +    E+       T
Sbjct: 295 KEIADSKVTEIKELNNANELADFAKEAT 322


>gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC]
 gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC]
          Length = 869

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 195/614 (31%), Positives = 320/614 (52%), Gaps = 37/614 (6%)

Query: 377 IQQWVQKLETIGSASFKIITDT------MDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
            +  VQ++E   S   +II +       +   H K +A ++     K      +  + + 
Sbjct: 276 FKTLVQQVEEASSVDVEIINNNKQLAHVLSTLHGKSVAFSVGY---KGSFLPSLTLMGVA 332

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489
           L+               ++L+ L+ FF  E     G+NIK D   L   GI +     D+
Sbjct: 333 LASDDDVYYVDIEHALDDVLTPLQYFFRREDTTFYGYNIKRDNHALKNAGIHVHNIALDL 392

Query: 490 MLMSYVLDSGRS--------SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            L  ++++ G           H + S A ++            + S+PI K   +  Q  
Sbjct: 393 ALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKEW-------GQLSLPIAKSPANPAQYF 445

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               S++  ++   L  +L ++ +  ++  ++ P+  V+  +E  G+ +D + L+++   
Sbjct: 446 GGFVSHLP-KIKKSLLEELKIKGVEDLFFNMEMPLEKVLFTIERNGMPLDVEDLQELERI 504

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +S+ L  L ++IY L+G  FN+ SPKQL ++L+ KL      K ++     T  ++ +  
Sbjct: 505 LSEELAMLTDDIYTLAGAPFNIKSPKQLSEVLYNKLGLKPIDKARS-----TKAEVLEAL 559

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            G++ II+ IL +R + K+ STY  +LP  ++  T R+H  ++   T+TGRLA  +PNLQ
Sbjct: 560 SGEHEIIEKILAFRAVEKLLSTYVKALPRQVDPSTSRIHPTFNQMGTVTGRLACQDPNLQ 619

Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIPI+++ G+ +R+AF  +      +SADYSQIELR LAH+++   L   FE+  DIH  
Sbjct: 620 NIPIRSERGRLLRKAFCNTHQNNYFLSADYSQIELRFLAHLSQDESLKLAFESREDIHTF 679

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            A+++F V +E+V+ Q R  AKT+NF IIYG   + L+  L+I  SEA   I  YF R+P
Sbjct: 680 TASQVFHVPLEEVTKQQRMQAKTVNFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYP 739

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            +  +I +T +   +N  V+T+ GR    D       + R  + R A+N  IQGSAA++ 
Sbjct: 740 EVARFINETVSQACENLRVKTLLGRERIIDNWTEFS-NSRAASGRLAVNTRIQGSAAELI 798

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + AM+ +  +LE  KL ++MLLQIHDEL+FEVPEEE      ++   ME A +    L V
Sbjct: 799 KLAMLQLSDALEKRKLKSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAMI----LSV 854

Query: 961 PLKVNIKVSNNWQE 974
           PL VNI +  NW E
Sbjct: 855 PLVVNILIGKNWAE 868



 Score =  273 bits (699), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 101/296 (34%), Positives = 153/296 (51%), Gaps = 10/296 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            +F++D S F++RA++A P +     G    A+ GF   + KL+    KE   SH   +F
Sbjct: 3   KIFILDASGFVFRAYFALPDMKNSS-GEGTQAVFGFIRSINKLI----KEFSPSHMVAVF 57

Query: 66  DYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D P     R EIY DYK+NR +  E L  Q+P+V+      G+  +E++G EADD+IA+ 
Sbjct: 58  DGPNNKQSRREIYADYKSNREQKEENLYQQIPVVKEYCSLLGLSYLEVEGVEADDVIASA 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQ 183
           T  A  EG+ V I + DKDL+QLV P     +  K++ +ID   VI  +GIPP  +    
Sbjct: 118 TRQAVSEGYQVCICTADKDLLQLVGPNVVALNPWKDQPEIDENRVIDIYGIPPTGISDYL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPG+ G G K A  LLQ+Y ++E IL N   +     +  + E  +   LS
Sbjct: 178 ALVGDTSDNIPGVSGCGPKKATALLQKYHSVEGILENLDELTGSTHK-MLSEQKDVLLLS 236

Query: 244 RKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + L +L   +P+   ++ L     + +   L +F     F  L+ +V      D  
Sbjct: 237 KSLAVLNDAIPLPKRIDELKFPLYEAHQEELNAFYMRQGFKTLVQQVEEASSVDVE 292


>gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 858

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 218/566 (38%), Positives = 325/566 (57%), Gaps = 35/566 (6%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           +     + K    + +E   + LS   S     +    ++ L  +     +   LKI HN
Sbjct: 307 LEHCRYEGKIAIHYHLENNVLSLSYSESNIFYIEQDSIQDALIIINLTLLSNGVLKIIHN 366

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           IK  + +       +   +D+M+MSY LD+G+  H I +I    LS   +          
Sbjct: 367 IKEIRKIFPAIEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLSENAE---------- 416

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                         I ++  ++ +   L+ +L  EKLL +YER DKP++ V+  ME  GI
Sbjct: 417 --------------IFSAKTLIAIHEKLKQRLFQEKLLTIYERFDKPLMKVIFDMEKNGI 462

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   L+++S +  + +  LE+ IY+L+GE+FN++SPKQL D+LF K+      K+K  
Sbjct: 463 LLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKKKKSKKS 522

Query: 649 QWKTTA-QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
              +T  + LE +      I   IL WR LSK+K TY D+L   ++    R+HT +S  +
Sbjct: 523 GSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTA 582

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+++ G  IR+AFI+P   K+ISADYSQIELR+LAH+A +   
Sbjct: 583 TATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAF 642

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F N  DIH + A ++FGV  +++  Q+RR AK+INF IIYGISPF LA +L I  +E
Sbjct: 643 KEAFANGQDIHEITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 700

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA+YI  YF  +P I  Y+EK  +  R +GYVET+FGRR    +IN+    IR   ERAA
Sbjct: 701 AAEYINYYFSCYPEIKAYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQFAERAA 760

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RA I +   L+      K++LQ+HDEL+ EV +E++   +++I   
Sbjct: 761 INAPLQGTAADIIKRATIQLFDQLK----VGKIILQVHDELLVEVEDEKVQETAKLIKDI 816

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQ 973
           ME A    I + +PL+V IK+ +NW 
Sbjct: 817 MENA----IEISIPLEVEIKIGDNWG 838



 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 175/302 (57%), Gaps = 8/302 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE    ++DG  F++RA+Y  P L     G+P+  + GF NM+ K + +S       +  
Sbjct: 2   KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHS------DYLT 54

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +  D     FR+ +YP+YKANR   PE L PQ  ++R A +AF +   EI+G+EADDIIA
Sbjct: 55  IALDAGKKNFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114

Query: 123 TYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T     A  + F V ++S+DKDL QL++    ++D +K   ID + VI+K+G+   K++ 
Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L +LTGD+ DNIPG+PGIG KTAA LL E+ +L NI+ N   I+Q + R  + E+ E A 
Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +SR+L+ L   V +   +    +   N  +L+SFLK  EF  LI +V   +    ++ E 
Sbjct: 235 ISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKVEKLFSYSGSSTEE 294

Query: 302 VV 303
            +
Sbjct: 295 KI 296


>gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 627

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 216/644 (33%), Positives = 349/644 (54%), Gaps = 30/644 (4%)

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
           K++ E+ PQ   L  L+  ++   N+    KIV  K   ++++++    S    +I D  
Sbjct: 5   KLSLEEKPQNPTLFSLENTAEKKENS----KIVEEKKEVEFIKEINLTLSNRELLIIDNE 60

Query: 400 DAFHSKPIAIA-------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
           +  + +   ++       I   +     S + +  +  L+            L    +S 
Sbjct: 61  NILNEQREYLSNYKKIASIYYEELGIIISTEDKDFYFPLNHGGLLAKNIDKNLVVNFISE 120

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           L       +   I +N K    VL   GI+ +     M+++Y L S ++  D      ++
Sbjct: 121 L-------NIKFISYNFK----VLLNLGINFKSMYMDMMIAYHLISSQTKIDPIIPITEY 169

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
                K+  K+    I I+ I+     ++    S  IL ++  L   L  E L  +    
Sbjct: 170 SKLEPKDF-KTAFGKINIELITAQDFSKYLSATSIGILAIYDELNYLLKKEDLYKILMEN 228

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+I V+S ME  GI+ID    K  S E+ K LL +E+ IY+ +GE+FN++SPKQLGDI
Sbjct: 229 EMPLIQVLSLMERKGIEIDIQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDI 288

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF KL  PSG KTKTG + T    LE +      I + +L++R+L+K+K+TY D+LP  +
Sbjct: 289 LFVKLNLPSGKKTKTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLV 347

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           ++   R+HT ++   T TGRL+S +PNLQNIP+KTD G KIR  F++   K L+S DYSQ
Sbjct: 348 DE-NSRIHTTFNQIGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQ 406

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYG 811
           +ELR+L  ++K   L + +    D+H + A  IF + + E VS + R  AK INFSIIYG
Sbjct: 407 VELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDTETVSREQRTIAKIINFSIIYG 466

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            +PF LA +L+IP  +A++YIK+YF ++P +  +  +   F  ++GYV+T+FGR+ +   
Sbjct: 467 KTPFGLAKELKIPVKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISG 526

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           I+S   +I++  ER A+N  IQG+AA++ ++ M+ V+  L+D +    +LLQ+HDEL+FE
Sbjct: 527 IDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKE-DITLLLQVHDELIFE 585

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           V E  +   S+I+   M+     +    V L +NI +  NW E 
Sbjct: 586 VEENSVEKYSEILADIMKNTVQLE---DVKLNININIGKNWAEA 626


>gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
 gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
          Length = 862

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/533 (34%), Positives = 309/533 (57%), Gaps = 28/533 (5%)

Query: 453 LKKFFENEHFLKIG---------HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSH 503
           LK + ++  + +           ++IK +  +L + GI +   +D+M+ + ++DS  +S 
Sbjct: 347 LKDYLKDTSYPQAWNETSYRRTTYDIKRNAHLLEKNGIYLNFSDDVMIYTSLVDSTITSF 406

Query: 504 D-IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +   ++   +   +E+ K        +++ +     +       ++Q+     PKL  
Sbjct: 407 KKLKEKSEWQETIRYEEVYKK-------EELIEKNQAAYCASVLRNLIQVDQEYYPKLKE 459

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
             L+ +Y  ++ P++ ++  ME  GI+ ++ +L  ++      +  LE+ IY + G +FN
Sbjct: 460 MNLISLYRDVELPLVTILKDMEQKGIRCEEKVLDHIAEGTLAKIQELEKAIYKVVGHEFN 519

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           L+SPKQL  +L+ +L+   G K      ++TA    +   G   ++ +IL +R+ SK+ S
Sbjct: 520 LNSPKQLAVVLYDELQILKGKK------RSTAAGELEKIQGLYTVVDDILAYRKYSKLYS 573

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TYA+ L  +I    + +HT Y+ A+T TGRL+S EPNLQNI ++ + G++IR+AF+    
Sbjct: 574 TYAEGLKKYIQADGK-IHTVYNQAATQTGRLSSSEPNLQNISVRDEEGREIRKAFLPEEG 632

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             L+S+DY Q+ELRILAH+AK+  L + F+N +DIH   A ++F  ++E+V+P  RR AK
Sbjct: 633 CVLVSSDYHQVELRILAHMAKVPNLIKAFQNEMDIHSQTAMDLFDCSLEEVTPLQRRQAK 692

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           T+NF I+YGIS F LA+QL + R EA D+I++Y+  +P I  Y+E   +F ++NGYVET+
Sbjct: 693 TVNFGIVYGISDFGLASQLGVSRFEARDFIEKYYRVYPEIKTYMESVIHFCKENGYVETL 752

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             RR    EI+     I+   ERAA+NAPIQG+AAD+ + AMI V + ++++ L  KM+L
Sbjct: 753 CHRRREIPEIHDKNKQIQAFGERAAMNAPIQGTAADLIKLAMIQVREMIDENHLKAKMIL 812

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           Q+HDEL+F VP EE+     II   ME A     +L VPL   I +   W E 
Sbjct: 813 QVHDELIFNVPLEEVEIMKTIIQKGMETAM----SLDVPLTSEISIGQTWYEA 861



 Score =  288 bits (736), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 106/297 (35%), Positives = 162/297 (54%), Gaps = 14/297 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L LVDG+S ++R +YAT      +   G+P NA+  F  ML K +   R E+      
Sbjct: 2   KTLLLVDGNSMLFRGYYATAYGRPMKTSSGIPTNAVFAFATMLQKAIDIIRPEA----VL 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR+E+Y  YK  R + PE L+PQ  +VR   +AFGI  +E++  EADD++ 
Sbjct: 58  VAFDAGKHTFRHELYEGYKGGRKQAPEDLVPQFQMVRDYLEAFGIQWVEMENIEADDLVG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           +       + F   I+S+DKDL+QLV   T +    K     E++    V +  G+ P +
Sbjct: 118 STAKQ--NDCFKTVILSSDKDLLQLVDEKTTVMLMKKGITEMEEMTPSSVKEAMGVTPVQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ L+ L GDS DNIPGIPGIG KTA  LL+ YG +E +L +   +K    ++ + E  +
Sbjct: 176 IIDLKGLMGDSSDNIPGIPGIGQKTAVKLLETYGTVEEVLAHQGELKGA-LQKKVNEGHD 234

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           +A LS++L  ++TDV +   +  L        +LI FL+ LE  +L+ +  T  D +
Sbjct: 235 SALLSKQLATIKTDVSLPYTISQLGFH-PTYDKLIQFLETLEMRQLVRQYHTLMDHE 290


>gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243]
 gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243]
          Length = 875

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 181/491 (36%), Positives = 266/491 (54%), Gaps = 23/491 (4%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D+ L  YVL+S  S +   ++   +      E           D+      Q  A    
Sbjct: 407 FDLGLAGYVLNSSVSEYSFDALLDAYYGGVLPE---------TKDEAGAVAAQAAAAR-- 455

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
                L   L   L  ++    Y  +D P++ V++ +E TG  +D D L ++ A     L
Sbjct: 456 ----MLVGPLTDALGRDESKRAYFDIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAEL 511

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             L   I +++GE+FNL SPKQL  ILF  L   +  K + G     A   E     D+ 
Sbjct: 512 DELRARIIEIAGEEFNLDSPKQLAHILFEVLGLRTLRKNQRGYSTDAAVLKE--LSNDHE 569

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +   +L +R+L+KIKSTY D+LP        RVHT ++   T TGRL+S EPNLQNIP++
Sbjct: 570 LPALVLRYRELAKIKSTYIDALPRM-RADDGRVHTSFNETVTTTGRLSSSEPNLQNIPVR 628

Query: 727 TDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           T+ G++IR  F+        +SADYSQIELR+LAH++    L   F +  D H   A+ +
Sbjct: 629 TEFGRQIRECFVPLEEGHAFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRV 688

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FG+ +E VSP++R  AK +NF I+YG   F L+  L IP  EA + I+RYF  +PG+  Y
Sbjct: 689 FGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAY 748

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +++T    ++ GY ET+FGR+ H  E+ +  ++ R   ER A+N P+QGSAADI + AM 
Sbjct: 749 LDRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGSAADIIKLAMT 808

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            V + + +     K+LLQ+HDEL F VPE EI   S I+   ME      ++LRVPL V+
Sbjct: 809 EVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEH----IVDLRVPLDVD 864

Query: 966 IKVSNNWQEEN 976
           +  ++NW E +
Sbjct: 865 VSYADNWAEAH 875



 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 106/412 (25%), Positives = 181/412 (43%), Gaps = 27/412 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++DG+S ++RA++A P      DG P NA+ GF  ML K +  +  ++        
Sbjct: 3   KKIAVIDGNSLMHRAYHAVPQTMNAPDGRPTNAVFGFVAMLLKFIDIANPDA----LICA 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD     FR E    YKA RP + + L  Q P+V    +A  +P + I+G+E DD++ T 
Sbjct: 59  FDAGRPAFRMEALEQYKAQRPPMDDDLKVQFPIVEELLEAMNVPVVRIKGWEGDDVLGTI 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
               E+ G+   +++ DKD  QL +  T +  T K            V++++G+ P++ +
Sbjct: 119 AARDEELGYETLLVTGDKDAYQLATDKTRIVTTKKGITDVAIYGPAEVLERYGVRPDQFI 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L GDS DNIPG+PGIG KTAA LLQ YGNLE I  +   +K  K++E I++  + A
Sbjct: 179 DFLGLKGDSSDNIPGVPGIGDKTAAKLLQTYGNLEGIYEHVDDLKG-KQKEKIVDNKDMA 237

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD-AANI 299
            LSR++  +  D+   + LE       +  ++    K+++F   ++RV      +     
Sbjct: 238 YLSREVATIVRDLDFPLDLEACSFPSFDSDKVTEAFKSVQFNAHLSRVLKLVGKELEKKA 297

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD--------QTSKINSEQTPQKLF 351
            P+V++   +  +  A+              F               +   SE T     
Sbjct: 298 APLVVEPVVSGPEAQALVDAAIARGETVGVAFIEPEQVSLFNAGLHGAVNTSEGTAVFED 357

Query: 352 LE---------RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
            E         R    +   +  + +            V+  E +G  +F +
Sbjct: 358 DEGREAFARIVRAGSFAALDVKREVHRIYPADTAEAALVEDAELMGMRAFDL 409


>gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss]
 gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14]
 gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg]
          Length = 866

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 187/712 (26%), Positives = 338/712 (47%), Gaps = 40/712 (5%)

Query: 266 DCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
            C   +  +FLK  +  + +             +    ++      +   + T++     
Sbjct: 191 GCGPKKAQAFLKEFQSVEDLVANTQRLSSKNKQMIEEQIETLLLSKRLATLHTDLMIPLK 250

Query: 326 IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
            +   FSS +   +++N+     +   + L K +     + S   + +   +Q  ++ L+
Sbjct: 251 TEEMSFSSQTADVAQLNAFY--LQHGFKALVKHAPTSETSISLQVVKDPSVLQMVLKNLK 308

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
                 + +          +   +A+S  D+           +I++S             
Sbjct: 309 GRE-VGYCVAYTGEHLPSLRLHGVALSGGDE---------VFYIEISGDQE--------- 349

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDI 505
               ++ LK FF +      G+  K D   L  +GI +    D++L  ++++ G      
Sbjct: 350 ----IALLKAFFADATTKFFGYRTKRDNHALKNHGIDVHVTADLVLAQHLVNGGAKI-SF 404

Query: 506 ASIAQKWLSYTRKEILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            ++  +                SS+P+  +  +  Q   I  S +   +   L  KL  +
Sbjct: 405 QTLLVESGHIQEAAFFAKEWGASSLPVQNLPQNPAQYFGIFVSRLP-SIKNYLFEKLEEK 463

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            L  +++ +++P+ +++  ME  G+ +D + L  +  ++SK L +  + IYDL+G +FN+
Sbjct: 464 GLKSIFKNVEQPLEEILFAMECAGMPLDSEGLLVLDRDLSKELETYTQEIYDLAGCEFNI 523

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            SPKQL D+L+ +L      K K+     T  ++ +   G + II  IL +R   K+ ST
Sbjct: 524 KSPKQLSDVLYHRLGIKPVDKAKS-----TKAEVLEALEGSHEIISKILAFRATEKMLST 578

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPT 742
           Y  +LP  I+  T RVH  ++   T+TGRL+  +PNLQNIP++ + G+ +R AF  +   
Sbjct: 579 YVRALPRQIDLGTHRVHPTFNQVGTVTGRLSCQDPNLQNIPVRYERGKSLREAFRFTKEN 638

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
              ++ADYSQ+ELR LAH+++   L + F++  DIH   A+++F V +++V+ + R  AK
Sbjct: 639 DYFLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAK 698

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF + YG   + L+  L+I  +EA   I  YF R+P   E+I  T     +   V T+
Sbjct: 699 AVNFGLAYGQQAYGLSKNLKISVNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVTTM 758

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GR     +  S     R  + R A+N  IQGSAA++ + AM+++ + L    L +++LL
Sbjct: 759 LGRERILSDWESS-PGARAASGRLAVNTRIQGSAAELIKLAMLNISRELVSRGLKSRLLL 817

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDEL+FEVP+EE+     ++   ME A     +L VPL VN+ +  NW E
Sbjct: 818 QIHDELLFEVPKEELEEMKVLVQEKMESAM----SLSVPLVVNVLIGKNWAE 865



 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/285 (35%), Positives = 159/285 (55%), Gaps = 9/285 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             LF++D S FI+RA++A P + R  +G    A+ GF   L KL+ +   E    +   +
Sbjct: 2   KKLFILDASGFIFRAYFALPEM-RGPNGGSTQAVFGFIRSLDKLVNDLSPE----YMVAV 56

Query: 65  FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD P     R E+Y DYK+NR +  E L  Q+ LV+   +  GIP +E +G EADD+IA+
Sbjct: 57  FDGPNNKQSRQELYADYKSNRDRKFEDLPEQIALVKQYCELIGIPCLEKEGVEADDVIAS 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  EGF V I + DKDL+QLV+    +++  KE++I    V+ ++G+ P+++    
Sbjct: 117 VAKKAVAEGFEVCICTADKDLLQLVNSQVSVFNPWKEQEIKYNEVLLQFGVAPDQIADYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS DNIPG+ G G K A   L+E+ ++E+++ N  R+   K ++ I E  ET  LS
Sbjct: 177 ALVGDSSDNIPGVVGCGPKKAQAFLKEFQSVEDLVANTQRLSS-KNKQMIEEQIETLLLS 235

Query: 244 RKLVMLRTDVPITIPLEHLIL--EDCNGPRLISFLKALEFTKLIN 286
           ++L  L TD+ I +  E +    +  +  +L +F     F  L+ 
Sbjct: 236 KRLATLHTDLMIPLKTEEMSFSSQTADVAQLNAFYLQHGFKALVK 280


>gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
 gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
          Length = 869

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 191/607 (31%), Positives = 318/607 (52%), Gaps = 23/607 (3%)

Query: 377 IQQWVQKLETIGSASFKIITDT------MDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
            +  VQ++E   +   ++I ++      +   H K +  ++     K      +  + + 
Sbjct: 276 FKTLVQQVEEASNVYVEVINNSENLIEVLPTLHGKKVPFSVGY---KGSFLPSLSLMGVA 332

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489
           L+   S         T +++  LK FF  +     G+NIK D   L   GI +     D+
Sbjct: 333 LACDDSVYYVDVENATDDVIKPLKDFFGRKDTEFYGYNIKRDSHALKNAGIHVNNIALDL 392

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNV 548
            L  ++++ G        +A   L  +     K   + S+PI K   +   ++  E  + 
Sbjct: 393 ALAEHLINGGAKISYQTLLADLGLVSSAGRYGKEWGQLSLPIQKSPPNPA-QYFGEFVSH 451

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           +  +   L  +L  + +  ++  ++ P+  V+  +E  G+ +D + L+ +   +S+ L  
Sbjct: 452 LPTIKETLLKELKSKNIEDIFFNMEMPLEKVLFTIERNGMPLDVEDLQNLEKILSEELAI 511

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           L ++IY L+G  FN+ SPKQL ++L+ KL      K ++     T  ++ +   G++ +I
Sbjct: 512 LADDIYALAGSPFNIKSPKQLAEVLYNKLGLTPVDKARS-----TKAEVLEAMTGEHDVI 566

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           + IL +R + K+ STY  +LP  ++  T R+H  ++   T+TGRLA  +PNLQNIPI+++
Sbjct: 567 EKILAFRSVEKLLSTYVRALPKQVDPCTFRIHPTFNQMGTVTGRLACQDPNLQNIPIRSE 626

Query: 729 LGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            G+ +R+AF  +      +SADYSQIELR LAH+++   L   FE+  D+H   A+++F 
Sbjct: 627 RGRLLRKAFCDTHQNTYFLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFH 686

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V +EKV+ Q R  AKT+NF IIYG   + L+  L+I  SEA   I  YF R+P +  +I 
Sbjct: 687 VPLEKVTKQQRMQAKTVNFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPDVARFIN 746

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           +T +   +N  V+T+ GR    D       + R  + R A+N  IQGSAA++ + AM+ +
Sbjct: 747 ETVSQACENLRVKTLLGRERIIDNWTEFS-NSRAASGRLAVNTRIQGSAAELIKLAMLQL 805

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
             +LE  KL ++MLLQIHDEL+FEVPEEE      ++   ME A +    L VPL VNI 
Sbjct: 806 SDALEKRKLRSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAMI----LSVPLVVNIL 861

Query: 968 VSNNWQE 974
           +  NW E
Sbjct: 862 IGKNWAE 868



 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/354 (30%), Positives = 175/354 (49%), Gaps = 13/354 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            +F++D S F++RA++A P +     G    A+ GF   + KL+    KE   +H   +F
Sbjct: 3   KIFILDASGFVFRAYFALPDMKNSS-GKGTQAVFGFIRSINKLI----KEFSPNHMVAVF 57

Query: 66  DYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D P     R EIY DYK+NR K  E L  Q+P+V+      G+  +E++G EADD+IA+ 
Sbjct: 58  DGPNNKQSRREIYADYKSNREKKEEDLYQQIPVVKEYCNLLGLSHLEVEGVEADDVIASV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQ 183
           + +A  EG+ V I + DKDL+QLVSP   + +  K++  ID   V+  +G+PP ++    
Sbjct: 118 SKLAIAEGYEVCICTADKDLLQLVSPNVVVINPWKDQPPIDENGVVNIYGVPPCRIPDYL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPG+ G G K AA LLQ+Y ++E IL +   +     +    E  +   LS
Sbjct: 178 ALVGDTSDNIPGVSGCGPKKAAALLQKYHSVEGILEHLDELTGSTHK-MFSEQKDILLLS 236

Query: 244 RKLVMLRTDVPITIPLEHL--ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           + L +L  +VP+   ++ L   + +     + +F     F  L+ +V    +     +E 
Sbjct: 237 KDLAVLNNNVPLPTEIKDLEFPMHEIRQEEMNAFYMRQGFKTLVQQVEEASNV---YVEV 293

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           +    N  E        ++      K S   SLS     +  + +   + +E  
Sbjct: 294 INNSENLIEVLPTLHGKKVPFSVGYKGSFLPSLSLMGVALACDDSVYYVDVENA 347


>gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi]
 gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi]
          Length = 858

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 217/566 (38%), Positives = 324/566 (57%), Gaps = 35/566 (6%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           +     + K    + +E   + LS   S     +    ++ L  +     +   LKI HN
Sbjct: 307 LEHCRYEGKIAIHYHLENNVLSLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHN 366

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           IK  + +       +   +D+M+MSY LD+G+  H I +I    LS   +          
Sbjct: 367 IKEIRKIFPATEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLSENAE---------- 416

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                         I ++  ++ +   L+ +L  EKL  +YER DKP++ V+  ME  GI
Sbjct: 417 --------------IFSAKTLIAIHEKLKQRLFQEKLFTIYERFDKPLMKVIFDMEKNGI 462

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   L+++S +  + +  LE+ IY+L+GE+FN++SPKQL D+LF K+      K+K  
Sbjct: 463 LLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKKKKSKKS 522

Query: 649 QWKTTA-QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
              +T  + LE +      I   IL WR LSK+K TY D+L   ++    R+HT +S  +
Sbjct: 523 GSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTA 582

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+++ G  IR+AFI+P   K+ISADYSQIELR+LAH+A +   
Sbjct: 583 TATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAF 642

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F N  DIH + A ++FGV  +++  Q+RR AK+INF IIYGISPF LA +L I  +E
Sbjct: 643 KEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 700

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA+YI  YF  +P I  Y+EK  +  R +GYVET+FGRR    +IN+    +R   ERAA
Sbjct: 701 AAEYINYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYVRQFAERAA 760

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RA I +   L+      K++LQ+HDEL+ EV +E++   ++++   
Sbjct: 761 INAPLQGTAADIIKRATIQLFDQLK----VGKIILQVHDELLVEVEDEKVQETAKLMKDI 816

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQ 973
           ME A    I + VPL+V IKV +NW 
Sbjct: 817 MENA----IEISVPLEVEIKVGDNWG 838



 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 176/302 (58%), Gaps = 8/302 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE    ++DG  F++RA+Y  P L     G+P+  + GF NM+ K + +S       +  
Sbjct: 2   KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHS------DYLT 54

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +  D     FR+++YP+YKANR   PE L PQ  ++R A +AF +   EI+G+EADDIIA
Sbjct: 55  IALDAGKKNFRHDLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114

Query: 123 TYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T     A  + F V ++S+DKDL QL++    ++D +K   ID + +++K+G+   K++ 
Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNYNILIFDPIKNIYIDEKQIVEKFGVNSNKLLD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L +LTGD+ DNIPG+PGIG KTA  LL E+ +L NI+ N   I+Q + R  + E+ E A 
Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTATKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +SR+L+ L   V +   +    +   N  +L+SFLK  EF  LI ++   +  + ++ + 
Sbjct: 235 ISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKMEKLFSYNGSSTKE 294

Query: 302 VV 303
            +
Sbjct: 295 KI 296


>gi|315452575|ref|YP_004072845.1| DNA polymerase I [Helicobacter felis ATCC 49179]
 gi|315131627|emb|CBY82255.1| DNA polymerase I [Helicobacter felis ATCC 49179]
          Length = 861

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 239/985 (24%), Positives = 413/985 (41%), Gaps = 151/985 (15%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVD  S +++ ++    L R   G     ++ F  ++ ++ +       A H     
Sbjct: 8   KLHLVDTFSLLFKFYFHLKDL-RTSSGTSTAWLSAFVRVVQQVYK-----LKADHLVFAL 61

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           +      R  + P YK+NR   P  L  QLP++    +A G+ +  + G+E+DD+IA+  
Sbjct: 62  ESK-DNRRKTLCPTYKSNRTSPP-GLEEQLPIIFEWIEAMGLDSFSMPGYESDDVIASLC 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           ++  +    V I+S DKD  QLVSP   L D        IE  ++K+GI P + +  Q L
Sbjct: 120 HVFPEA--EVRILSVDKDFFQLVSPRVLLCDPSSNTLKGIEECLEKYGIYPHQFIEYQGL 177

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR-LSR 244
            GDS D                   Y  +E +               +++   T   L  
Sbjct: 178 VGDSSDG------------------YKGVEGV--------GPIYGTKLIQAFSTLENLYY 211

Query: 245 KL-VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            L     T+  +   ++H            + L+  E   L  R+A           P  
Sbjct: 212 ALETTSITNPKLPAKIQH------------ALLRDKEQAFLSRRLAKLES--GLFNHPPT 257

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L     EN  + I   ++         F+ L   T     + TP                
Sbjct: 258 LKPFPQENPLLRIADALEHYEM-----FALLKQITPTYIPKTTPILPPQH---------- 302

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
                     T    + + +L T  +    + + T+     +P++ +   LD  D  +  
Sbjct: 303 ---------TTPPTLEILNQLSTC-ALYLDLQSTTLGILGLEPVS-SFMLLDLHDPQAPA 351

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGIS 482
                                                    +G+ IK   L    RY + 
Sbjct: 352 CVQRLY-------------------------------ACKLVGYQIKELFLYFKQRYQLD 380

Query: 483 MR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           +   +ED+ L++++ +S      ++++ + +   +         SS P   ++ +Q++ +
Sbjct: 381 LPTHYEDVALLAWLHNSSLEPQ-MSALGRLFSLESF--------SSKPHAPLNAAQMESN 431

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +         L P      LL +   L+ P++ ++ +M+  G  +D    + +  E
Sbjct: 432 TRLIARAYTHYKDTLSP-----DLLQLARELEYPLLAILLEMQAQGFSLDLAYFQTLKQE 486

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +++L +L+  I+ L+    N++S KQ    L+  L   +    K     +T +   +  
Sbjct: 487 FAQSLNTLQNQIHALAHTDINVNSTKQWAHFLYQDLGLQAKGVKKIKTGFSTDEASLKAL 546

Query: 662 CGDNP-----------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
                           ++  +L +R+L K++STY + L      +  ++HT +   +T +
Sbjct: 547 QETYQGARVQGVEVATLLDALLGYRELFKLQSTYVEPLLTQ--NQHGKIHTIFYQHTTAS 604

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQ 769
            RL+S  PNLQNIPI+T LG+KI   FI   P   L+ ADYSQIELR+LAH +  T L Q
Sbjct: 605 SRLSSAHPNLQNIPIRTPLGKKIAHGFIPSAPDLLLLGADYSQIELRLLAHFSNDTHLIQ 664

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F  + DIH   A  +F        P  R  AK+INF++IYG+ P RLA  L+I + EA 
Sbjct: 665 AFLQNQDIHLNTALALFN------DPHKRHAAKSINFALIYGMGPRRLADTLKISQQEAK 718

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           DYI RYF+ FP I +++++ K  + Q G + T+ G + H+D  N+    ++    R  IN
Sbjct: 719 DYIDRYFNAFPTIKDFLDQLKARILQEGKITTLLGHQRHFDFTNAT-PKLQAEYLREGIN 777

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
              QGSA+D+ + AM+ +H  +  +    KML+Q+HDE++ EVP+ +++  +  I   ME
Sbjct: 778 TLFQGSASDLVKLAMLKIHAHIAKYP-RVKMLVQVHDEIILEVPKTQVSQIALEIKTIME 836

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
                   L+VPL+ +     NW E
Sbjct: 837 ----GIYPLKVPLECHTSYGANWGE 857


>gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bifidobacterium longum DJO10A]
          Length = 682

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 182/676 (26%), Positives = 330/676 (48%), Gaps = 24/676 (3%)

Query: 315 AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
           A+  E++     K+    + +      N+    +    E+ ++ S   +N    T I   
Sbjct: 8   ALFKELEFGPRTKSRVLKTFNTGAKASNTSGAGESTNNEQNEQDSSLDLNLPEPTSITAP 67

Query: 375 KDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAIAISTLDQKDDTSFKVE 425
           +   +WV+    +++  G  +   ++D  D     A     +  A +     D+   +  
Sbjct: 68  EQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGHAWTVAAWGDERPGRAT 127

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR- 484
              I ++  TS  +     +T  + + L +F ++EH   I H  K    +L    + M  
Sbjct: 128 AQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDL 186

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS-DSQVQEHAI 543
              D  L  Y+      +  +   A+ +L     E  +  + ++  D    +    EH +
Sbjct: 187 PMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRL 246

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            +  +I  L + L P +   +   +   ++ P+  V+  ME TG ++D   L  +  + +
Sbjct: 247 RDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFA 306

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--- 660
                 +E  ++ +G + NL SPKQL  +LF  +      +TK+G + T A  L+ +   
Sbjct: 307 AEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVK 366

Query: 661 ---NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
              N   N  +  +L  R+++K+K     +L +  N   +R+HT +      TGRL+S++
Sbjct: 367 SVDNERANGFLGALLRHREINKLK-QIVQTLIDATNTSDERIHTTFEQTVAATGRLSSVD 425

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP +   G++IR  F+     + L+S DYSQ+ELRI+A ++    L + F +  D
Sbjct: 426 PNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGAD 485

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            H+ VA+ ++ + +++++   R H K +++ + YG+S + LA QL+I   EA     RYF
Sbjct: 486 FHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYF 545

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
             F  +H+Y+E      R+ GY ETIFGRR ++  ++S     R   ERAA+NAPIQGSA
Sbjct: 546 DTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSA 605

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI + AMI   ++L +  + ++++LQIHDELV E+   E    ++++ ++ME A    +
Sbjct: 606 ADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA----V 661

Query: 957 NLRVPLKVNIKVSNNW 972
           +L VPL V+  + ++W
Sbjct: 662 DLAVPLDVSCGIGSDW 677


>gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
 gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
          Length = 890

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/474 (34%), Positives = 267/474 (56%), Gaps = 26/474 (5%)

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            + +  + +K+L   R ++ +  K       + D+                   L  +L 
Sbjct: 441 GYALGGLIEKYLPDFRCDVEERYKEIAAFPALCDA-------------------LSKELT 481

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
             ++  +   ++ P+ +V++ ME  G Q+D   ++     +   +  + + IY  +GE+F
Sbjct: 482 EWEMGSLLHDIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYAGEEF 541

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N++S ++LG ILF KL  P+G KTKTG   +T  D+ +     +PI   +LE+R+L+K+ 
Sbjct: 542 NINSTRELGAILFDKLGLPTGKKTKTGY--STNVDVLEKLIPKHPIAGLVLEYRKLTKLS 599

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY   L        QRVH+ +    T TGR++S EPN+QNIPI+T+LG ++R+ F++ P
Sbjct: 600 STYVTGLLKVTGPD-QRVHSVFRQTETRTGRISSTEPNMQNIPIRTELGSQMRKFFVAKP 658

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+ ADYSQIELRILAHI+  + +   F    DIH   A+++FGV  E +  ++RR A
Sbjct: 659 GCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQVFGVPAEVLPAELRRRA 718

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K INF I+YGI  + L+  + +  +EA +YI+ Y H + G+ +Y+        ++GYV+T
Sbjct: 719 KAINFGIVYGIGAYSLSQDINVSVAEAKEYIENYLHTYSGVRQYMNDIVESSAKSGYVKT 778

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +FGR  H  EI S   + +   ER A+N PIQG+AADI + AM+ V++ L++  L+ +++
Sbjct: 779 MFGRVRHLPEITSSNHNTKAFGERVALNTPIQGTAADIIKIAMVKVYRRLKEEGLSAQLI 838

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           LQ+HDEL+ EV + +   A  I+   ME A     +L VPL V++    NW + 
Sbjct: 839 LQVHDELLIEVSKADAPRAKVILKEEMEHAA----DLSVPLSVDVSEGENWYDA 888



 Score =  280 bits (716), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 154/299 (51%), Gaps = 10/299 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            +  VDG+S + R++Y    LS    G+P NA+ GF N++ K+++    +      AV F
Sbjct: 42  KVLAVDGNSILNRSYYGVRNLSNSK-GVPTNAVFGFFNVMDKMIKEVEPD----CVAVAF 96

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y  YKA R  +PE L  QLP+ +   Q FG   +E +GFEADDI+ T+ 
Sbjct: 97  DLSAPTFRHKQYDGYKAGRKGMPEELAVQLPITKELIQLFGYHIVECEGFEADDIMGTFA 156

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVCLQ 183
            +  ++     I + D+D +QLV     +     +E    D + +++++G+ P +++ ++
Sbjct: 157 RLCREQKAECVIATGDRDNLQLVGDGVTVRLATNKEAILFDTDKIVQEYGVTPPELIEVK 216

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE---YAETA 240
           AL GDS DNIPG+ GIG KTA  L+ +Y ++  IL +A  +    R +N+L      E A
Sbjct: 217 ALMGDSSDNIPGVKGIGEKTALSLVSKYHSVSYILDHAQELDATTRVKNLLSAEGARELA 276

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            +SR L  +  + PI   L H  +   +   L      LE  K + R       + A  
Sbjct: 277 EMSRMLGTIVDNAPIDGDLSHYAVGPRDDAGLYRIFSELELKKFLERYHLQPGNEPAPA 335


>gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|332287087|ref|YP_004421988.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1]
 gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC]
          Length = 869

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/586 (32%), Positives = 314/586 (53%), Gaps = 31/586 (5%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           +     K +A ++     K +    +  + + L+               ++++ LK FF+
Sbjct: 304 LSTLQGKSVAFSVGY---KGNFLPSLTLMGVALACDEQVYYVDIEHAQDDVITPLKDFFK 360

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS--------SHDIASIA 509
            +     G+NIK D   L   GI +     D+ L  ++++ G           H +   A
Sbjct: 361 RKDTEFYGYNIKRDHHALKNAGIHIDNITLDLALAEHLINGGAKISYQTLLVDHGLMESA 420

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            K+            + S+PI K S ++  E+  E  + + ++   L  +L ++ +  ++
Sbjct: 421 GKYGKEW-------GQLSLPILK-SPAKPAEYFGEFVSHLPKIKKSLLEELKIKGVEDLF 472

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             ++ P+ +V+  +E  G+ +D + L+++   +S+ L  L ++IY L+G  FN+ SPKQL
Sbjct: 473 FNMEMPLENVLFTIERNGMPLDVEDLQELERTLSEELAILTDDIYTLAGASFNIKSPKQL 532

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
            D+L+ KL      K ++     T  ++ +   G++ I++ IL +R + K+ STY  +LP
Sbjct: 533 SDVLYNKLGLTPIDKARS-----TKAEVLEALLGEHEIVEKILAFRAIEKLLSTYVKALP 587

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISA 748
             I+  T R+H  ++   T+TGRLA  +PNLQNIPI+++ G+ +R+AF  +      +SA
Sbjct: 588 RQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFRDTRQNNYFLSA 647

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR LAH+++   L   FE+  D+H   A+++F V +E+V+ Q R  AKT+NF I
Sbjct: 648 DYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFGI 707

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG   + L+  L+I  SEA   I  YF R+P +  +I++T +   +N  V+T+ GR   
Sbjct: 708 IYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFIDETISQACENLRVKTLLGRERI 767

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
            D       + R  + R A+N  IQGSAA++ + AM+ +  +LE  KL ++MLLQIHDEL
Sbjct: 768 IDNWTEFS-NSRAASGRLAVNTRIQGSAAELIKLAMLQLADALEKRKLRSRMLLQIHDEL 826

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +FEVPEEE      ++   ME A +    L VPL VNI +  NW E
Sbjct: 827 IFEVPEEEKEEVQTLVRDIMESAMI----LSVPLVVNILIGKNWAE 868



 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 102/320 (31%), Positives = 163/320 (50%), Gaps = 13/320 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            +F++D S F++RA++A P +     G    A+ GF   + KL+    KE   +H   +F
Sbjct: 3   KIFILDASGFVFRAYFALPDMKNSS-GEGTQAVFGFIRSINKLI----KEFSPNHMVAVF 57

Query: 66  DYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D P     R EIY DYK +R K  E L  Q+P+V+      G+  +EI+  EADD+IA+ 
Sbjct: 58  DGPNNKQSRREIYADYKIHREKKDENLYQQIPIVKEYCNLLGLRYLEIEDVEADDVIASI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQ 183
           T  A  EG+ V + + DKDL+QLV P     +  K++  ID   V+  +G+PP ++    
Sbjct: 118 TKRAVAEGYEVCLCTADKDLLQLVGPNVVALNPWKDKPPIDENGVVDIYGVPPSRIADYL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPG+ G G K A  LLQ+Y ++E IL +   +     +  I E  +   LS
Sbjct: 178 ALVGDTSDNIPGVSGCGPKKATALLQKYHSVEGILEHLDELTGSTHK-MISEQKDVLLLS 236

Query: 244 RKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA---N 298
           + L +L  ++P+ + +      L       + +F     F  L+  V  T + D     +
Sbjct: 237 KDLAVLNNNIPLPMSISGFEFPLHQVRQEEINTFYMRHGFKTLVQPVEETSNIDVEIINS 296

Query: 299 IEPVVLDINTTENKGIAIET 318
            +P+V  ++T + K +A   
Sbjct: 297 SQPLVRVLSTLQGKSVAFSV 316


>gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
          Length = 817

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 217/566 (38%), Positives = 324/566 (57%), Gaps = 35/566 (6%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           +     + K    + +E   + LS   S     +    ++ L  +     +   LKI HN
Sbjct: 266 LEHCRYEGKIAIHYHLENNVLSLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHN 325

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           IK  + +       +   +D+M+MSY LD+G+  H I +I    LS   +          
Sbjct: 326 IKEIRKIFPATEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLSENAE---------- 375

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                         I ++  ++ +   L+ +L  EKL  +YER DKP++ V+  ME  GI
Sbjct: 376 --------------IFSAKTLIAIHEKLKQRLFQEKLFTIYERFDKPLMKVIFDMEKNGI 421

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   L+++S +  + +  LE+ IY+L+GE+FN++SPKQL D+LF K+      K+K  
Sbjct: 422 LLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKKKKSKKS 481

Query: 649 QWKTTA-QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
              +T  + LE +      I   IL WR LSK+K TY D+L   ++    R+HT +S  +
Sbjct: 482 GSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTA 541

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T TGRL+S  PNLQNIPI+++ G  IR+AFI+P   K+ISADYSQIELR+LAH+A +   
Sbjct: 542 TATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAF 601

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F N  DIH + A ++FGV  +++  Q+RR AK+INF IIYGISPF LA +L I  +E
Sbjct: 602 KEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 659

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA+YI  YF  +P I  Y+EK  +  R +GYVET+FGRR    +IN+    +R   ERAA
Sbjct: 660 AAEYINYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYVRQFAERAA 719

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RA I +   L+      K++LQ+HDEL+ EV +E++   ++++   
Sbjct: 720 INAPLQGTAADIIKRATIQLFDQLK----VGKIILQVHDELLVEVEDEKVQETAKLMKDI 775

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQ 973
           ME A    I + VPL+V IKV +NW 
Sbjct: 776 MENA----IEISVPLEVEIKVGDNWG 797



 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 95/261 (36%), Positives = 153/261 (58%), Gaps = 7/261 (2%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           M+ K + +S       +  +  D     FR+++YP+YKANR   PE L PQ  ++R A +
Sbjct: 1   MVLKYIAHS------DYLTIALDAGKKNFRHDLYPEYKANRVTPPEDLTPQFTILREAVE 54

Query: 104 AFGIPAIEIQGFEADDIIATYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK 162
           AF +   EI+G+EADDIIAT     A  + F V ++S+DKDL QL++    ++D +K   
Sbjct: 55  AFNLSYEEIEGYEADDIIATLAAKYANHQDFKVVVVSSDKDLFQLLNYNILIFDPIKNIY 114

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
           ID + +++K+G+   K++ L +LTGD+ DNIPG+PGIG KTA  LL E+ +L NI+ N  
Sbjct: 115 IDEKQIVEKFGVNSNKLLDLFSLTGDASDNIPGVPGIGPKTATKLLDEFDSLNNIIENID 174

Query: 223 RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
            I+Q + R  + E+ E A +SR+L+ L   V +   +    +   N  +L+SFLK  EF 
Sbjct: 175 NIEQTRIRNILAEHKEKALISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFN 234

Query: 283 KLINRVATTYDCDAANIEPVV 303
            LI ++   +  + ++ +  +
Sbjct: 235 SLIGKMEKLFSYNGSSTKEKI 255


>gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Streptococcus pyogenes M49 591]
          Length = 418

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 172/422 (40%), Positives = 263/422 (62%), Gaps = 7/422 (1%)

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           +  KL   + L +Y+ ++ P+ +V+++MEI GI++++  L+ ++ +    + +L + IYD
Sbjct: 1   MLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYD 60

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           ++G++FN++SPKQLG ILF K++ P     KT    +TA D+ +      PI+  IL++R
Sbjct: 61  MAGQEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYR 120

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           Q++K++STY   L ++I    + +HT Y    T TGRL+S++PNLQNIPI+ + G+ IR+
Sbjct: 121 QITKLQSTYVIGLQDYILADGK-IHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRK 179

Query: 736 AFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KV 793
           AF        L+S+DYSQIELR+LAHI+    L   F    DIH   A  +FG++    V
Sbjct: 180 AFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADV 239

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +   RR+AK +NF I+YGIS F L+  L I R +A  YI  YF R+PGI  Y+E      
Sbjct: 240 TANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREA 299

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +  GYVET+F RR    +INS   ++R+  ER AIN+PIQGSAADI + +MI++ K+L+ 
Sbjct: 300 KDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKISMINLDKALQA 359

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                K LLQ+HDE+V EVP +E+T   +++  +ME A    ++L VPL V+     +W 
Sbjct: 360 GGFRAKCLLQVHDEIVLEVPNDELTAIKKLVKDTMEAA----VDLAVPLCVDESTGQSWY 415

Query: 974 EE 975
           E 
Sbjct: 416 EA 417


>gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
 gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
          Length = 1040

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/444 (40%), Positives = 279/444 (62%), Gaps = 8/444 (1%)

Query: 533  ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            +   ++   A+E ++   +L  +L  ++  E L  +Y+ L++P+I++++ ME  G+ +D+
Sbjct: 597  VPPERLALWAVEWADASARLGQVLAQRVAAEGLERLYDTLERPLIEILADMEEAGVALDR 656

Query: 593  DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
              L+Q+S + S  L  LE   + L+GE FNLSSP QL  ILF +L  P   KT  G+  T
Sbjct: 657  ARLRQLSRDFSARLTDLERQAHQLAGEPFNLSSPPQLRVILFERLGLPPRGKTPKGEAST 716

Query: 653  TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
              + LE++    + + K +LE R++ K+K+TY D+LPN  +    R+   ++   T TGR
Sbjct: 717  AQEVLEELAAL-HQLPKVLLEHRRIEKLKNTYLDALPNLTHPDG-RIRATFNQGVTATGR 774

Query: 713  LASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISADYSQIELRILAHIAKITPLYQV 770
            L+S EPNLQNIP++T+ G+++R+AF++  P  + L++ADYSQIELR+LAH ++   L + 
Sbjct: 775  LSSSEPNLQNIPVRTEEGRQVRQAFVAGDPARQVLLTADYSQIELRVLAHFSRDPALLRA 834

Query: 771  FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
            FE   DIH  VAA+IFGV ++ V+   RR AKT+NF +IYG+S   LA++L I +SEAA 
Sbjct: 835  FEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNFGVIYGLSAHGLASRLGISQSEAAA 894

Query: 831  YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            +I  YF ++P +  ++ +     R  G VET+ GRR   + I   +   RN+ ER AIN 
Sbjct: 895  FINAYFDQYPHVEAFMTRVLTQARDTGRVETLEGRRRAINGIKHVEGRHRNLAERTAINT 954

Query: 891  PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
             IQGSAAD+ +RAMI+V + L++ KL  +M+LQIHDEL+FEV  + +T  ++++  +M  
Sbjct: 955  VIQGSAADLIKRAMIAVDQRLKETKLPARMILQIHDELLFEVERDALTETARLVQEAMIH 1014

Query: 951  ACLPKINLRVPLKVNIKVSNNWQE 974
            A      L  PLKV++    NW +
Sbjct: 1015 AA----TLETPLKVDLAAGPNWLD 1034



 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 138/539 (25%), Positives = 233/539 (43%), Gaps = 42/539 (7%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K   L+L+D  + IY+ F+A P L     G P NA+ G    L  L +  + +      
Sbjct: 3   SKRPTLYLLDSFALIYQVFHAIP-LMTGPVGQPTNAVFGILRDLLNLRRQRKPDL----M 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A  +D P   FR+EI P YKA R   PE L PQL ++  A + F +P + + GFEADD++
Sbjct: 58  AAAWDAPGPVFRSEIDPSYKATRKDQPEDLTPQLDVIARALEGFRVPVVAVPGFEADDVL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           AT        G+ V + ++DKD  QL+  P   L +  K + ID      +WGI PE++V
Sbjct: 118 ATLARRGAAAGYDVILCTSDKDARQLLTDPAIRLLNLRKGQIIDAAAHRAEWGIGPERVV 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--NASRIKQKKRRENILEYAE 238
              ALTGD++DN+PG+PGIG KTA  LL E+G L+ +L    A R+  KK  + ++E+AE
Sbjct: 178 DALALTGDAVDNVPGVPGIGLKTAVKLLNEFGTLDQLLEAARAGRVPGKK-GQALVEHAE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT-------T 291
               +R+L+ LR D+P+      L+    +   L +  +   F K +  +          
Sbjct: 237 ALDRARRLIQLRDDLPLKFDPHALVTRPPDVEALQTLCRQCGFHKFLPEIEADAARWGIL 296

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
                A   P  +       + ++    +            S+    ++      P    
Sbjct: 297 PASSVAGPGPGQIPAPVPVPEPVSSIAPMPAPPLQANDPLRSIDSHHNQPQQSFIPNTET 356

Query: 352 LERLQKLSQ-----------YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
            E     S               +   Y  + + +++ +   +L          +  + D
Sbjct: 357 TEIRPVWSATSAPSSVGNERPIWSTAEYRLVNHPEELAKVAAELAGASQLGLWTVPGSPD 416

Query: 401 AFHSKPIAIAISTLDQKD-DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
              +  + +A+S+   +     F        +   T++D              L    EN
Sbjct: 417 LHRAAWVGLALSSEPGRGWYFPFMGPPGATVIPAQTARD-------------LLTPLLEN 463

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
                  H++K    VL R+G ++ G   D M++SY+L+SG  +H    +A+++L++T 
Sbjct: 464 PRIAWHAHDLKAHLRVLKRHGWTLAGKGVDPMVLSYLLESGERNHTAPELAKRFLNHTL 522


>gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115]
          Length = 926

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 184/499 (36%), Positives = 289/499 (57%), Gaps = 30/499 (6%)

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           L   G  +   +D +L +Y+LD   +   +A++  ++L               P D    
Sbjct: 456 LSVRGTVVDPGDDPLLHAYLLDPSNT--TMATVTPRYLGVP-----------WPAD---- 498

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                 A   + V  +L   L P+L   +   +Y  ++KP+  V+++ME+ G+++D + +
Sbjct: 499 ------AAGRAAVTARLLRDLPPQLDEAR-TKLYAGMEKPLAAVLTRMEVRGVRLDSEYI 551

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + ++   +  L +LE  I+   G +F++ SP QL  +L+ +L   SG KTK    ++TA 
Sbjct: 552 RGLAGAAAARLAALETEIHQHVGREFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAV 611

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
              +    ++P+I  +LE+R+L K++ TY D LP+ +N RT R+HT ++  +  TGRL+S
Sbjct: 612 AALEPLRDEHPVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFAQTAVATGRLSS 671

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           L PNLQNIPI++++G++IR+ FI+     LISADYSQIELR+LAHIA    + Q F    
Sbjct: 672 LNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFREGA 731

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AA++ G+  + V+   RR AKT+NF ++YG+S  RL+ +L I   EAA +I+ Y
Sbjct: 732 DIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMSAHRLSNELGISYVEAAGFIETY 791

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F+ +PGI  YI++T  F R  GYVET++GRR +  E+ +   ++R   ER A N PIQG+
Sbjct: 792 FNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVREAGERLAYNMPIQGT 851

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI + + LE   L  ++LLQ+HDEL+ E PE      +++    ME A    
Sbjct: 852 AADIIKHAMIRLDRELEA--LGGRLLLQVHDELLIEAPENRAEDVARLTREVMEGAA--- 906

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL V +    NW +
Sbjct: 907 -KLSVPLAVEVGTGPNWYD 924



 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/257 (36%), Positives = 138/257 (53%), Gaps = 9/257 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG +  +R+++A P L+    G   NAI GF  M  +L +    +       V+
Sbjct: 11  DTLVLIDGHALAFRSYFALPPLTNSR-GEATNAILGFLRMTLRLAKQRSNQ-----VIVV 64

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+E +  YK+ R + P  L  Q+  +R    A G P +E  G+EADD+IA+ 
Sbjct: 65  FDPPVKTFRHEQFDGYKSGRAETPADLPAQINRIRAIVDALGFPRLEEPGYEADDVIASL 124

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  AE  G  V I+++D+D  QL+     +        I  + V +K+G+   + V  +A
Sbjct: 125 TRKAEGSGMQVRIVTSDRDAYQLLDDHVKVIAN-DFSLIGPDQVFEKYGVTVRQWVDYRA 183

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--NASRIKQKKRRENILEYAETARL 242
           LTGD+ DNIPG  GIG KTAA LLQEYG LE I     A  +K    R+ +L+  E  + 
Sbjct: 184 LTGDASDNIPGAKGIGPKTAAKLLQEYGTLEGIYEAARAGTLKPDGTRQKLLDSEEAVKF 243

Query: 243 SRKLVMLRTDVPITIPL 259
           S +L  + TD+P+ +  
Sbjct: 244 SHELSCMVTDLPLEVDF 260


>gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I)
           [Deinococcus deserti VCD115]
          Length = 923

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 184/499 (36%), Positives = 289/499 (57%), Gaps = 30/499 (6%)

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           L   G  +   +D +L +Y+LD   +   +A++  ++L               P D    
Sbjct: 453 LSVRGTVVDPGDDPLLHAYLLDPSNT--TMATVTPRYLGVP-----------WPAD---- 495

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                 A   + V  +L   L P+L   +   +Y  ++KP+  V+++ME+ G+++D + +
Sbjct: 496 ------AAGRAAVTARLLRDLPPQLDEAR-TKLYAGMEKPLAAVLTRMEVRGVRLDSEYI 548

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           + ++   +  L +LE  I+   G +F++ SP QL  +L+ +L   SG KTK    ++TA 
Sbjct: 549 RGLAGAAAARLAALETEIHQHVGREFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAV 608

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
              +    ++P+I  +LE+R+L K++ TY D LP+ +N RT R+HT ++  +  TGRL+S
Sbjct: 609 AALEPLRDEHPVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFAQTAVATGRLSS 668

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           L PNLQNIPI++++G++IR+ FI+     LISADYSQIELR+LAHIA    + Q F    
Sbjct: 669 LNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFREGA 728

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           DIHR  AA++ G+  + V+   RR AKT+NF ++YG+S  RL+ +L I   EAA +I+ Y
Sbjct: 729 DIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMSAHRLSNELGISYVEAAGFIETY 788

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F+ +PGI  YI++T  F R  GYVET++GRR +  E+ +   ++R   ER A N PIQG+
Sbjct: 789 FNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVREAGERLAYNMPIQGT 848

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           AADI + AMI + + LE   L  ++LLQ+HDEL+ E PE      +++    ME A    
Sbjct: 849 AADIIKHAMIRLDRELEA--LGGRLLLQVHDELLIEAPENRAEDVARLTREVMEGAA--- 903

Query: 956 INLRVPLKVNIKVSNNWQE 974
             L VPL V +    NW +
Sbjct: 904 -KLSVPLAVEVGTGPNWYD 921



 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/257 (36%), Positives = 138/257 (53%), Gaps = 9/257 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG +  +R+++A P L+    G   NAI GF  M  +L +    +       V+
Sbjct: 8   DTLVLIDGHALAFRSYFALPPLTNSR-GEATNAILGFLRMTLRLAKQRSNQ-----VIVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR+E +  YK+ R + P  L  Q+  +R    A G P +E  G+EADD+IA+ 
Sbjct: 62  FDPPVKTFRHEQFDGYKSGRAETPADLPAQINRIRAIVDALGFPRLEEPGYEADDVIASL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
           T  AE  G  V I+++D+D  QL+     +        I  + V +K+G+   + V  +A
Sbjct: 122 TRKAEGSGMQVRIVTSDRDAYQLLDDHVKVIAN-DFSLIGPDQVFEKYGVTVRQWVDYRA 180

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--NASRIKQKKRRENILEYAETARL 242
           LTGD+ DNIPG  GIG KTAA LLQEYG LE I     A  +K    R+ +L+  E  + 
Sbjct: 181 LTGDASDNIPGAKGIGPKTAAKLLQEYGTLEGIYEAARAGTLKPDGTRQKLLDSEEAVKF 240

Query: 243 SRKLVMLRTDVPITIPL 259
           S +L  + TD+P+ +  
Sbjct: 241 SHELSCMVTDLPLEVDF 257


>gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 838

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 196/562 (34%), Positives = 308/562 (54%), Gaps = 41/562 (7%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG-HNIKYD 472
           +   D  S     +  D     + +        KEI  +L          KI   ++K  
Sbjct: 314 IQPADLFSTPEVAVIHDFERVIAINEGYVEVDFKEIEEFL------PEKGKIYTFDLKS- 366

Query: 473 KLVLHRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
             + H+ G  +R F   D+ +  Y+L+  +  +              K+ILK R   + +
Sbjct: 367 --LYHKVGEKLRNFSFIDLSVCEYLLNPLQKDYS------------SKDILKKRLGVVSL 412

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +++ D           +  L +   +  +L  E L ++YE ++ P+  V+ +ME  G+  
Sbjct: 413 EEVKD---------YVHYTLDIGKEILNELKKEGLENLYESIEHPLTFVLYKMEKRGVLF 463

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D++ L+    E+ +    +E+ I++++GEKFNL+SPKQL  ILF KLK     KTK+G +
Sbjct: 464 DKEYLENFGKELDRKSKEIEKKIFEIAGEKFNLNSPKQLSKILFEKLKLKPLKKTKSG-Y 522

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
            T  + L  +    + I + +LE+R+L+K+ ST+   +  H+++   RV T +    T T
Sbjct: 523 STDVETLTALALKGHKIAELLLEYRKLTKLNSTFVKGILKHMDEDG-RVRTTFIQTGTAT 581

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GRL+S EPNLQN+P+  ++ +KIR A  +P    L+ ADYSQIELRILAH+++   L + 
Sbjct: 582 GRLSSAEPNLQNLPVSDEISKKIRYAVTAPAGYNLVWADYSQIELRILAHLSQDEKLLEA 641

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           +    DIH   A+ +FG++ E+V  ++RR AKT+NF IIYG+SP  L+ +L I   EA  
Sbjct: 642 YRKGRDIHTETASYLFGISAEEVDERLRRIAKTVNFGIIYGMSPHGLSERLGISVEEAEK 701

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI RYF +FP + EYIE T     + GYV+TIFGR+    E+ S   +IR+  ERAA+NA
Sbjct: 702 YIDRYFEKFPKVKEYIENTLREAYEKGYVKTIFGRKRPLPELKSSNKNIRSFGERAAVNA 761

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQG+AADI + AM+ ++K L   KL   M+LQ+HDE+V E  EE+     +I+  +ME 
Sbjct: 762 TIQGTAADIMKLAMVKLYKKL--EKLGAYMVLQVHDEIVIEALEEKTEEIMKIVKETMEN 819

Query: 951 ACLPKINLRVPLKVNIKVSNNW 972
                +   VPL V++KV  +W
Sbjct: 820 V----VEFSVPLTVDVKVGKHW 837



 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 113/295 (38%), Positives = 171/295 (57%), Gaps = 10/295 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+  ++L DG+S  YRA+YA   L+    G P NAI GF  M  KL ++ +      +
Sbjct: 1   MSKK-TIYLFDGTSLAYRAYYAIKDLTTSK-GFPTNAIYGFIRMFLKLYKDFKPN----Y 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR+++  +YKANR   P+    QLP ++   +  GI  +E +GFEADDI
Sbjct: 55  IAVAFDVGKKTFRSKLLKEYKANRKPTPDSFKLQLPYIKKFLECLGITILEKEGFEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIPPE 177
           + T       EG+ V +++ DKD+ QL+     +     T ++E  D+    +K+GI PE
Sbjct: 115 LGTAAKKFASEGYRVFVVTPDKDMRQLIDGKISVIAINKTGQKEIYDLVSFKEKYGIEPE 174

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     L GDS+DNIPG+P IG KTA  L+ E+GNLEN+  N S++   KRRE + ++ 
Sbjct: 175 QIPDFFGLVGDSVDNIPGVPSIGEKTAQKLIAEFGNLENLYKNLSKLTS-KRREVLEKFK 233

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           E A LSR+L  ++ +VPI I LE+L +++  G  L  FLK LE   +++ +   +
Sbjct: 234 EQAFLSRELAKIKKNVPIEISLENLKVKEPQGKCLGEFLKELEMRSIVSELKKLF 288


>gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 936

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 166/523 (31%), Positives = 261/523 (49%), Gaps = 21/523 (4%)

Query: 465 IGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           + H+ K     L   G ++     D+ML +Y++   + S+  A +  + L     ++   
Sbjct: 421 VVHDWKGTAHALRAQGWTLGEECFDVMLAAYLVAPDQRSYAAADLVGRVLGL---DVGGG 477

Query: 524 RKSSIPIDKISDSQ----VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
                  D  ++ +               +  L   L   L       +   ++ P   V
Sbjct: 478 APDDALFDLAAEGEGPGVAGARLGRLCAALHPLRAELGEALRGSGEAGLLSDVEMPTAAV 537

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ ME  GI +D   L  +S E+  ++    E    + G + NLSSPKQL ++LF     
Sbjct: 538 LAGMERVGIGVDSARLGALSDELGGDVERAREGALAVLGREVNLSSPKQLQEVLFEHFGL 597

Query: 640 PSGAKTKTGQWKTTAQDLEQINC------GDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           P   +TKTG         +            +  + ++L  R   K+K    DSL   + 
Sbjct: 598 PRTRRTKTGYTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLK-QMVDSLIASV- 655

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQ 752
               R+HT +S  +  TGRLAS +PNLQNIP ++  G +IR  F++ P  + L+SADYSQ
Sbjct: 656 ADDGRIHTTFSQVAAATGRLASADPNLQNIPARSADGMRIRGGFVAGPGFEALMSADYSQ 715

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IE+RI+AH+++   L   F +  D+HR +A+ +FG  + +V+ Q R   K  ++ + YG+
Sbjct: 716 IEMRIMAHLSQDEGLIGAFNSGEDLHRTMASMVFGTPVAEVTAQQRSRIKATSYGLAYGL 775

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S + L+ QL IP  EAA   +RYF RF G+ +Y+E   +  R  GY ET++ RR +  ++
Sbjct: 776 SKYGLSKQLGIPVPEAAALRERYFERFGGVRDYLESLVDQARSRGYTETMYHRRRYLPDL 835

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S     R + ERAA+NAPIQGSAADI + AMI V  +L    L +++L+QIHDEL+ EV
Sbjct: 836 GSDNRQRREMAERAALNAPIQGSAADIMKLAMIGVVGALGRAGLRSRVLVQIHDELLVEV 895

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              E     + +   M        +LRVPL V++ V  +WQE 
Sbjct: 896 APGERERVEEAVRQEMAGVA----SLRVPLDVSVGVGPSWQEA 934



 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/301 (31%), Positives = 150/301 (49%), Gaps = 10/301 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + + ++DG S  YRAFYA P        G   NA+ GF +ML +LL+  R     +H AV
Sbjct: 36  DTVLIIDGHSMAYRAFYALPADKFVTTTGRCTNAVYGFVSMLTRLLEQER----PTHVAV 91

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    +FR + YP+YK  R   PE    Q+ L+     A GI ++  + +EADDI+AT
Sbjct: 92  AFDLSRHSFRTDEYPEYKGTRDATPEEFKGQVELIGQVLGAMGITSLTKERYEADDILAT 151

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                 + G  V ++S D+D  Q V     +           ++D   V  K+G+PP + 
Sbjct: 152 VARRGAEAGMRVLVVSGDRDSFQTVGERVTVLYPGTGPGDLRRMDPAAVEAKYGVPPHRY 211

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             + AL G++ DN+PG+PG+G KTAA  +  +  L+N+L  A  +   KR + + ++A+ 
Sbjct: 212 PEVAALVGEASDNLPGVPGVGPKTAAQWIARFDGLDNLLARADEV-GGKRGQALRDHADE 270

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            R +R+L  L  D+ + + ++ L     +   + S   ALEF  L  RV        A  
Sbjct: 271 VRRNRRLNRLVDDLDLGVGIDDLRRGPTDFAEIQSLFDALEFGSLRRRVRQVAHVGRAGA 330

Query: 300 E 300
           E
Sbjct: 331 E 331


>gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 879

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 172/533 (32%), Positives = 276/533 (51%), Gaps = 18/533 (3%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504
           T  +   L ++  ++   K+  + K     L R GI++ G   D++L  +++        
Sbjct: 362 TPAVRDALAEWLASDT-PKVMADAKPQVKALLREGIALGGIASDVILAGWLVRPSFPDKT 420

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  + Q++L     E   +        ++          + +  I ++    R  L  E+
Sbjct: 421 LGDLVQRYLDEKLPEADPT--------QLVPETEGATPGQLAWFIRRVAEAQRADLP-ER 471

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           +  V + ++ P +  ++ ME+ G+ +    L   SAE+     +L  + Y   G + NL 
Sbjct: 472 VAEVLDDIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYAAIGHEVNLG 531

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQL ++LF +L+ P   KTK+G     A   +      +P +  +L+ R+ +K+K   
Sbjct: 532 SPKQLQEVLFDELQLPKTRKTKSGYTTDAAALADLQESAPHPFLDLLLKHREATKLK-QI 590

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK- 743
            D+L         R+HT Y    + TGRL+S +PNLQNIPI+T+  ++IR AF       
Sbjct: 591 IDALDTATGPDG-RIHTTYVQTGSQTGRLSSTDPNLQNIPIRTEESRRIRAAFEVGEGYE 649

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L++ADYSQIE+RI+AH++    L + F +  D+HR V A +FGV   +V+P MR   K 
Sbjct: 650 TLLTADYSQIEMRIMAHLSGDPGLIEAFNSGEDLHRFVGARVFGVEPAEVTPAMRTKVKA 709

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           +++ ++YG+S F L+ QLRI +SEA   +  YF RF  + +Y+  +    RQ+GY ETIF
Sbjct: 710 MSYGLVYGLSAFGLSKQLRIEQSEAKKLMLEYFARFGAVRDYLRGSVEQARQDGYTETIF 769

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR  + ++ S    +R   ERAA+NAPIQGSAADI + A+  + + L    L +++LLQ
Sbjct: 770 GRRRPFPDLTSMNRVLRENAERAALNAPIQGSAADIMKVALFRIREELASAGLRSRVLLQ 829

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           IHDELV E+   E     +I+   M  A      L VPL V I    +W E  
Sbjct: 830 IHDELVVEIAPGEWDAVERIVRARMADAA----ELSVPLDVQIGRGGDWDEAG 878



 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 164/308 (53%), Gaps = 11/308 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            ++  L +VDG S  YRAFYA P+ +    DG   N I GF +M   L++  +     +H
Sbjct: 4   AEKPTLLVVDGHSLAYRAFYALPVDNFSTKDGQHTNGIYGFLSMFVNLVKAEK----PTH 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    +FR   Y +YKANR + P     Q+PL++   +A G+P ++ + FEADDI
Sbjct: 60  LAVAFDTSRQSFRTREYAEYKANRSESPAEFKGQIPLLQECLEAMGVPVLKKEDFEADDI 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKE----EKIDIEHVIKKWGIP 175
           +AT     E +GF V + S D+D +QLV+     LY  V+     ++ D   VI+K+G+P
Sbjct: 120 LATLATQGEAQGFQVLVCSGDRDTIQLVTDDITLLYPNVQGVSQLKRYDTAAVIEKYGLP 179

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           PE+   + AL G++ DN+PG+P +G KTA   L ++G+L+ +L NA ++       N+ E
Sbjct: 180 PEQYPDIAALVGETSDNLPGVPKVGEKTAVKWLTQWGSLDALLENADKVTG-VVGNNLRE 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           + +  R +R L  L  DV + +    L ++  +G  +      LEF  L+ RV      D
Sbjct: 239 HLDGVRRNRALNRLLRDVELPVGPSDLQMKPLDGQAVRDIFARLEFRTLLPRVFDALGGD 298

Query: 296 AANIEPVV 303
           A +     
Sbjct: 299 AGDAAEEA 306


>gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 514

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/522 (36%), Positives = 299/522 (57%), Gaps = 12/522 (2%)

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
           KF        I +N K     L   G + +     M+++Y L S ++  D+     ++  
Sbjct: 3   KFIAELDIKFISYNFK----ALLNLGFTFKSMYMDMMIAYHLISSQTKMDVLLPITEYSK 58

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              K+  K+      I+ +   +   +       IL  +  +   L  E+L ++  + + 
Sbjct: 59  VEAKDF-KTTFGKTHIETLLVDEFARYLSNIGLGILACYDEINHLLHKEELHNILIQNEM 117

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I V+S ME  GI+ID    K  S E+ K L   E+ IY+ +GE+FN++SPKQLGDILF
Sbjct: 118 PLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKTEKAIYEEAGEEFNINSPKQLGDILF 177

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            K+  PSG KTKTG + T    LE +      I + +L++R+L+K+K+TY D+LPN ++ 
Sbjct: 178 VKMNLPSGKKTKTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPNLVD- 235

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
              R+HT ++   T TGRL+S EPNLQNIP+KTD G KIR  F++   K L+S DYSQ+E
Sbjct: 236 SNSRIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVE 295

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGIS 813
           LR+L  ++K   L + +    D+H + A  IF + + + V+ + R  AK INFSIIYG +
Sbjct: 296 LRVLTSMSKDENLIKAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKT 355

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            F LA +L+IP  +A++YIK+YF ++P +  + ++   F  ++GYV+T+FGR+ +   I+
Sbjct: 356 AFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGID 415

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +I+   ER A+N  IQG+AA++ ++ M+ V++ L+D      +LLQ+HDEL+FEV 
Sbjct: 416 SKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYEVLKDKD-DIALLLQVHDELIFEVE 474

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           E  +   S+I+   M+     +    V L +NI    NW E 
Sbjct: 475 ENSVEKYSEILADIMKNTVKLE---DVNLNININTGKNWAEA 513


>gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
 gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
          Length = 439

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 184/444 (41%), Positives = 279/444 (62%), Gaps = 9/444 (2%)

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           +    +  H     +V+ +L   + P+L   + LH+Y+ ++ P+  ++++MEI GI++  
Sbjct: 1   MDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQA 60

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L ++  ++   +  L+  IY L+GEKFN++SPKQLG ILF KLK     KTKTG   +
Sbjct: 61  TTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFDKLKLTPAKKTKTGY--S 118

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T+ D+ +     +PI+ +IL++RQ+SKI+STY + L ++I    + +HT +    T TGR
Sbjct: 119 TSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGR 177

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S+EPNLQNIP+K + G++IR+AF+       L S DYSQ+ELR+LAH++    + + F
Sbjct: 178 LSSVEPNLQNIPVKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAF 237

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           +   DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA  L I R EA +
Sbjct: 238 KEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQN 297

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I  YF ++P I +Y++      R+ GY ETI  RR    +I++   +IR+  ER AIN+
Sbjct: 298 FINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINS 357

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           PIQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++
Sbjct: 358 PIQGSAADIIKIAMIKMQSELEQRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQ 417

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
           A      L VPL  +    +NW E
Sbjct: 418 AA----QLDVPLIADANWGHNWYE 437


>gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 857

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 196/490 (40%), Positives = 307/490 (62%), Gaps = 20/490 (4%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           F D+ L++Y+LD    +++ + + + +           +  SI ID+  ++  +++    
Sbjct: 385 FYDVTLIAYLLDPTHVTYNRSYVGELF-----------KVPSIYIDE--NASFEQNGNMI 431

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           ++ +L L+      L+   +  +++ +++P+I+V+++ME  GI ID++  K+V   + + 
Sbjct: 432 ADFLLALYTSSYELLVKNDIEKLFKEVEQPLIEVLAEMEKNGISIDEENWKKVRKSMKEK 491

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
              L   IY  +GE+FN++SPKQL  ILF K+  P+G KTKTG   +TA D+ +    D 
Sbjct: 492 EEKLLLEIYREAGEEFNVNSPKQLSHILFDKMGMPTGKKTKTGY--STAADVLESLAIDY 549

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P +KNILE+R L+K+ STY D++P  + K T+RVHT ++   T TGRL+S +PNLQNIP+
Sbjct: 550 PFVKNILEYRTLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNIPV 609

Query: 726 KTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           +T+ G+ IR  F+        IS+DYSQ+ELR+LAH++    L + FEN  DIHR  A+E
Sbjct: 610 RTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTASE 669

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV  E+V+ + R HAK +NF IIYGIS F L+ QL I R +A +YIK Y  R+PGIHE
Sbjct: 670 VFGVPFEEVTSEQRSHAKAVNFGIIYGISDFGLSKQLGISRKKADEYIKTYLKRYPGIHE 729

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +++K     R+ G V+T+FGR     +INS     R+  ER A+N PIQGSAADI + AM
Sbjct: 730 FMKKMTEEARKTGKVKTLFGRYRDLPDINSKNFQRRSFAERTAMNTPIQGSAADIMKIAM 789

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I V++ ++  K  +++LLQ+HDELV E  +EE+   S+++  +ME      ++L+V L  
Sbjct: 790 IQVYEKMKKGKYKSRILLQVHDELVVEAVKEEVEEISKLLKETMESV----VSLKVKLVA 845

Query: 965 NIKVSNNWQE 974
           ++ V  NW E
Sbjct: 846 DVHVGKNWAE 855



 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 117/325 (36%), Positives = 169/325 (52%), Gaps = 17/325 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L ++DGSS  YRAFYA PLL   H+G+  NA+ GF  ML  L +N   E    + AV
Sbjct: 2   DKKLVIIDGSSLFYRAFYALPLL--SHNGIYTNAVYGFLRMLAGLYRNLDPE----YIAV 55

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFRNEIY DYKA R   P  L+PQ  L++   +  G+   E+ G+E DDI+ T
Sbjct: 56  AFDKDRYTFRNEIYKDYKATRKSAPAELVPQFKLIKDLLRVMGVAVYEMAGYEGDDILGT 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
             +  + E   V I++ D+D +QL S    ++ T K      ++    V++K+GI P ++
Sbjct: 116 LAFKYKDE-LPVLIVTGDRDSLQLSSEKVTVFLTQKGISNMAEMTPSAVVQKYGIKPSQI 174

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++AL GD+ DNIPG+ GIG KTA  LLQ+Y NLENI  N   IK   ++  +L   E 
Sbjct: 175 IDMKALMGDTSDNIPGVKGIGEKTAVKLLQKYENLENIYKNIEEIKGA-QKTKLLSGKED 233

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT----YDCD 295
           A LSR L  +R D+PI   LE +  +  +   +      L    +   ++         +
Sbjct: 234 AYLSRNLAKIRIDIPINATLEEMK-QPIHYDEMKELFDKLGLHSIAEELSGLPRFKMLAE 292

Query: 296 AANIEPVVLDINTTENKGIAIETEI 320
           A   E   +       K I+ E EI
Sbjct: 293 AKKKEMEEMKPLLNWEKNISFEDEI 317


>gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3]
 gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3]
          Length = 869

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 188/586 (32%), Positives = 310/586 (52%), Gaps = 31/586 (5%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           +     K +A ++     K +    +  + + L+               ++++ L+ FF+
Sbjct: 304 LSTLQGKSVAFSVGY---KGNFLPSLTLMGVALACDEQVYYVDIEHAQDDVITPLRDFFK 360

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS--------SHDIASIA 509
            +     G+NIK D   L   GI +     D+ L  ++++ G           H +   A
Sbjct: 361 RKDTEFYGYNIKRDNHALKNAGIHIHNITLDLALAEHLINGGAKISYQTLLVDHGLVESA 420

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            K+            + S+PI K S ++  E+  E  + + ++   L  +L V+ L  ++
Sbjct: 421 GKYGKEW-------GQLSLPILK-SPAKPAEYFGEFVSHLPKIKKSLLEELKVKGLEDLF 472

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             ++ P+  V+  +E  G+ +D + L+++   +S+ L  L ++IY ++G  FN+ SPKQL
Sbjct: 473 FNMEMPLEKVLFTIERNGMPLDVEDLQELERTLSEELAILTDDIYTVAGTSFNIKSPKQL 532

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
            D+L+ KL      K ++     T  ++     G++ I++ IL +R + K+ STY  +LP
Sbjct: 533 SDVLYNKLGLTPIDKARS-----TKAEVLAALLGEHEIVEKILAFRAIEKLLSTYVKALP 587

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISA 748
             I+  T R+H  ++   T+TGRLA  +PNLQNIPI+++ G+ +R+AF  +      +SA
Sbjct: 588 RQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCDTRQNNYFLSA 647

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELR LAH+++   L   F +  D+H   A+++F V +E+V+ Q R  AKT+NF I
Sbjct: 648 DYSQIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFGI 707

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG   + L+  L+I  SEA   I  YF R+P +  +I +T N   +N  V+T+ GR   
Sbjct: 708 IYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFINETINEACENLRVKTLLGRERI 767

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
            D       + R  + R A+N  IQGSAA++ + AM+ +  +LE  KL ++MLLQIHDEL
Sbjct: 768 IDNWTEFS-NSRAASGRLAVNTRIQGSAAELIKLAMLQLAAALEKRKLRSRMLLQIHDEL 826

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +FEVPEEE      ++   ME A +    L VPL VNI +  NW E
Sbjct: 827 IFEVPEEEKEEVQTLVRDIMESAMI----LSVPLVVNILIGKNWAE 868



 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/320 (31%), Positives = 161/320 (50%), Gaps = 13/320 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            +F++D S F++RA++A P +     G    A+ GF   + KL+    KE    H   +F
Sbjct: 3   KVFILDASGFVFRAYFALPDMKNSS-GEGTQAVFGFIRSMNKLI----KEFSPKHMVAVF 57

Query: 66  DYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D P     R EIY DYK +R K  E L  Q+P+V+      G+  +EI+G EADD+IA+ 
Sbjct: 58  DGPNNKQSRREIYADYKIHREKQDENLYQQIPIVKEYCHLLGLRYLEIEGVEADDVIASI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK-EEKIDIEHVIKKWGIPPEKMVCLQ 183
           T  A  EG  V + + DKDL+QLV P    ++  K    ID   V+  +G+PP ++    
Sbjct: 118 TKQAVSEGCEVCLCTADKDLLQLVGPNVVAWNPWKAGPPIDENSVVDIYGVPPSRIADYL 177

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPG+ G G + A  LLQ+Y ++E IL +   +     +  I E  +   LS
Sbjct: 178 ALVGDTSDNIPGVSGCGPQKATALLQKYHSVEGILEHLDELTGSTHK-MISEQKDVLLLS 236

Query: 244 RKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA---N 298
           + L +L  +VP+ + +      L +     + +F     F  L+  V    + D     +
Sbjct: 237 KDLAVLDNNVPLPMGISGFAFPLHEVPQEEINTFYMRHGFKTLVQPVEEASNIDIEIIHS 296

Query: 299 IEPVVLDINTTENKGIAIET 318
            +P+V  ++T + K +A   
Sbjct: 297 CQPLVRVLSTLQGKSVAFSV 316


>gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
 gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
          Length = 859

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 182/642 (28%), Positives = 311/642 (48%), Gaps = 39/642 (6%)

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396
           +T              E  +  +   +       ++    +   V +L+           
Sbjct: 255 RTDAPIDTAEGAYKVTEGNKPAAVRLMQELEIQTLITRFGLDGIVPELDPDTLPEVDAAI 314

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
            ++    ++P       +  +     K   +    + +  QD+T      +E++S     
Sbjct: 315 ASL---PAEPSGH--YLVAARPAVLGKKSAVVQPEAWYAVQDTTVYPLSEEELVS----L 365

Query: 457 FENEHFLKIGHN-IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            ++        +        +           D  L +Y+LD+  S + + ++A  + + 
Sbjct: 366 LDDPKVTLDVFDSAPLYARAMAAGSWGSSIVWDGKLAAYLLDASASHYLLTTLATSYHAR 425

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                             S    +E+   ++  +  L+  ++ ++       +Y  ++ P
Sbjct: 426 ------------------SAFSCEEYP--DAGFLADLFAKMKAEITENGEDDLYNNIEFP 465

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILF 634
           +  V++ M  TGI +D++ ++    ++ + L  +   I   +G   FN +SPKQLG +LF
Sbjct: 466 LAQVLADMTRTGILVDREGIEAFGVQLRQELDQVLTRIEMEAGTSDFNPNSPKQLGTLLF 525

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
             +  P G KTK G W T A+ LE++   D P++++IL++R   K+ STY + L   I +
Sbjct: 526 DTMGLPHGKKTKNG-WSTDAETLEKLR--DIPLVEDILQYRACQKLNSTYVEGLLKVIGE 582

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
              R+HT ++     TGRL+S  PNLQNIPI+T++G K+R  F++ P   L+ ADYSQIE
Sbjct: 583 DG-RIHTRFNQTEARTGRLSSDNPNLQNIPIRTEMGSKLRAYFVAKPGCVLVDADYSQIE 641

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRILAH+     + + F +  DIHR  AA+I+ +  E V+P++R  AK INF I+YG   
Sbjct: 642 LRILAHVTGDAHMQEAFLSGADIHRSTAAKIYNIRPEDVTPRLRSSAKAINFGIMYGKGA 701

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           + L+  + +   EA  +++ Y   FP I  Y+EKT    RQ GYV T+FGRR    E+NS
Sbjct: 702 YSLSKDIGVSVKEAEAFLQTYLATFPNIDGYMEKTIADARQCGYVSTLFGRRRALPELNS 761

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
              +IR   ER A N PIQG+AAD+ + AM+ V + L + K+ ++++L +HDEL+ E PE
Sbjct: 762 NNHNIRASGERMARNTPIQGTAADVIKLAMVRVWRRLRNEKMESRLILTVHDELIVEAPE 821

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            E   A+QI+   ME      ++  VPL  ++    NW E +
Sbjct: 822 AEAEKAAQILREEME----GCVHYAVPLSTDVHTGKNWLEAH 859



 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 121/495 (24%), Positives = 211/495 (42%), Gaps = 27/495 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S   RAFY   LL+ K DG   NAI GF N++  LL+    +      AV F
Sbjct: 9   RLLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIFGFLNIMNSLLRECEPDE----VAVAF 63

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+E+Y  YK  R  +P+ L  Q+P+++      G   +  +G+EADDI+ T  
Sbjct: 64  DLKHPTFRHEMYDGYKGTRHAMPDELAQQMPILKELLTDLGYRQVSAKGWEADDILGTLA 123

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKM 179
              E       + + D+D +QLVS TT +          K E +D++ + +K+GI P+++
Sbjct: 124 AACEARRDDCFLATGDRDSLQLVSETTTVLLATSAMGRSKTETMDLDAIHEKYGIEPKQL 183

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-IKQKKRRENILEYAE 238
           + +++L GD+ DNIPG+ GIG KTA  L++ +G L+++  +    I + ++REN+L   E
Sbjct: 184 IEVKSLMGDTSDNIPGVKGIGEKTAMTLVKNFGTLDSVYDHLDSPIIKPRQRENLLACRE 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS  L  +RTD PI        + + N P  +  ++ LE   LI R     D     
Sbjct: 244 DAYLSHTLGTIRTDAPIDTAEGAYKVTEGNKPAAVRLMQELEIQTLITRFG--LDGIVPE 301

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           ++P  L         +  E         + +     S                    ++ 
Sbjct: 302 LDPDTLPEVDAAIASLPAEPSGHYLVAARPAVLGKKSAVVQPEAWYAVQDTTVYPLSEEE 361

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               +++   T  ++  D      +    GS    I+ D   A +    + +   L    
Sbjct: 362 LVSLLDDPKVT--LDVFDSAPLYARAMAAGSWGSSIVWDGKLAAYLLDASASHYLLTTLA 419

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE-------HFLKIGHNIKY 471
            +           S     D+     L  ++ + + +  E++          ++  ++  
Sbjct: 420 TSY----HARSAFSCEEYPDAGFLADLFAKMKAEITENGEDDLYNNIEFPLAQVLADMTR 475

Query: 472 DKLVLHRYGISMRGF 486
             +++ R GI   G 
Sbjct: 476 TGILVDREGIEAFGV 490


>gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
          Length = 857

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/528 (32%), Positives = 281/528 (53%), Gaps = 30/528 (5%)

Query: 451 SYLKKFFENEHFLKIGHN-IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           + L +  +N        N        +   G       D  L +Y+LD+  S + I+ + 
Sbjct: 358 ADLVRLLDNADVTLDVFNSAPLYAKAMAAGGWGSSIVWDGKLAAYLLDASASKYQISELI 417

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
             +             ++       D      A   +++    +  ++ ++       +Y
Sbjct: 418 PAY----------KAAAAFTCTDYPD------AGRLADL----FARMKAEITACGEDALY 457

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQ 628
             ++ P+  V++ M  TG+ +D+D ++Q   ++ + L  +   I+  +G   FN +SPKQ
Sbjct: 458 NEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREELEQVLTRIHMETGSATFNPNSPKQ 517

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG++LF  +  P G KT+ G W T A+ LE +   + P+++++L++R   K+ STY + L
Sbjct: 518 LGEMLFDTMGLPHGKKTQRG-WSTDAETLESLR--EYPLVEDVLQYRAYQKLNSTYVEGL 574

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
              I +   R+H+ ++     TGRL+S  PNLQNIPI+T+LG ++R  F++ P   L+ A
Sbjct: 575 LKVIGEDG-RIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVAKPGCVLVDA 633

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRILAHI     + Q F N  DIHR  AA+I+G+   +V+P++R  AK INF I
Sbjct: 634 DYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGI 693

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YG   + L+  + +   EA  ++K Y   FP +  Y++KT    + NGYV T+FGRR  
Sbjct: 694 MYGKGAYSLSKDIGVTVKEADAFLKNYLAAFPSVSGYMDKTIADAKANGYVSTLFGRRRT 753

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             E+ S   ++R   ER A N PIQG+AAD+ + AM+ V K L D K+A++++L +HDEL
Sbjct: 754 LPELASTNFNVRASGERMARNTPIQGTAADVIKLAMVRVWKRLRDEKMASRLILTVHDEL 813

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           + E PE E   A++I+   ME      +   VPL  ++    NW E +
Sbjct: 814 IVEAPEAEAEQAARILREEME----GCVQYAVPLSTDVHAGKNWLEAH 857



 Score =  290 bits (743), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 105/292 (35%), Positives = 158/292 (54%), Gaps = 14/292 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S   RAFY   LL+ K DG   NAI GF N+L  LL+  + +      AV F
Sbjct: 2   RLLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIYGFLNILLSLLKECQPDE----VAVAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR+++Y  YKA R  +PE L  Q+P+++      G   +  +G+EADDI+ T  
Sbjct: 57  DLKAPTFRHKMYDGYKATRHAMPEELAQQMPVLKQLLADLGYRTVTAEGWEADDILGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGIPPEKM 179
                      + + D+D +QLVS +T       +    K   +D + + +K+G+ P+++
Sbjct: 117 AACAARKDDCFLATGDRDSLQLVSESTTVLLAATVMGRSKTVVMDEDAIQEKYGLAPKQL 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYA 237
           + +++L GD+ DNIPG+ GIG KTA  L+Q +G+LE +  N    RIK  K+RE++LE  
Sbjct: 177 IEVKSLMGDTSDNIPGVKGIGEKTALSLVQAFGSLEGVYQNIDDKRIKP-KQREHLLEDK 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
             A LS  L  +RTD PI        + + N P  +  L+ LE   LI R  
Sbjct: 236 PMAELSHTLGTIRTDAPIDTAEGSYTVGEGNKPAAVRLLQELEIHSLIPRFG 287


>gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium]
          Length = 557

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 165/563 (29%), Positives = 260/563 (46%), Gaps = 53/563 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             LFL+D  + IYRA+YA     R    G   NA  GF + L  L+   +     +H AV
Sbjct: 3   KKLFLLDAMALIYRAYYALIRSPRITSKGRNTNAQFGFTSTLIDLINKEK----PTHLAV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A T R+  + +YKANR   PE L+  LP ++    AF IP +E+ G+EADD+I T
Sbjct: 59  CFDTEAATERHTDFAEYKANRQAAPEDLISALPDIKKIITAFNIPVVELDGYEADDVIGT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-----YDTVKEEKIDIEHVIKKWGIPP-E 177
             + A  +G+ V +++ DKD  QL+           Y   KE+ +D + + +KWGI   +
Sbjct: 119 LAWQAADKGYEVFMVTPDKDYGQLLIHNNVFIYKPPYQGGKEDILDAKKICEKWGIERVD 178

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V +  L GD++DNIPGI GIG KTA  LL+E+ NLENIL NA  IK     E I    
Sbjct: 179 QVVDMLGLMGDAVDNIPGIAGIGEKTACKLLKEFDNLENILANADNIKGA-VGEKIRNGK 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           E A +S+KL  + TDVP+    E   L++ N P L      LEF  L  R+         
Sbjct: 238 EAALMSKKLARIITDVPVQFHEEDYRLKEWNQPELKELFNELEFKALGKRLLGDDFSVFD 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTT-IKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                       +  G A+E++   +    +T + +     T+  N   TP         
Sbjct: 298 KAGNATPANGQMDMFGTAVESKSTEENANSETDETTETVGLTADKNLGNTP--------- 348

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                     +YT I   + I+Q V +L      SF   T    A   + + ++      
Sbjct: 349 ---------HTYTLIDTEEKIKQLVAELMAQDEISFDTETTGTYAHDVELVGLSFCYKTG 399

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           +          +I      ++        T+ +L + K  F++     IG N+KYD +VL
Sbjct: 400 EG--------YYIPCPPSANE--------TQALLQHFKPLFDDASKKWIGQNVKYDLIVL 443

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPID 531
             YG+ + G F D ML  Y+++       +  ++ ++L Y      + I K  K+ + + 
Sbjct: 444 KWYGVLLAGQFFDTMLAHYLIEP-EGRRGMDYLSAQYLQYEPVHIEELIGKKGKNQLTMK 502

Query: 532 KISDSQVQEHAIENSNVILQLWL 554
            +   +++E+A E++++ LQL  
Sbjct: 503 DVELEKIKEYAAEDADITLQLKN 525


>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
 gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 868

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 185/522 (35%), Positives = 280/522 (53%), Gaps = 31/522 (5%)

Query: 459 NEHFLKIGHNIKYDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
           N+    +  ++K    +L   GI        + D+ L +Y+LD     +    +  +W S
Sbjct: 374 NQSRHVVTPDLKS---LLRTNGIWRTIPNTHWIDLGLATYLLDPEERDYSWPKLVARWGS 430

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
                                            + L++W  LR KL   +LL + + L+ 
Sbjct: 431 VFGLSAGNPG----------------------LIALKVWEQLRNKLKTAQLLELMDSLEL 468

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I V++ ME  G+ +D   LK    E+  +L  L E IY  +G  FN+ S +QLGDILF
Sbjct: 469 PLIPVLADMEAVGVVLDDQNLKIFLVEVQNSLDHLTETIYHEAGGSFNIRSAQQLGDILF 528

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            +L+ P+  KT+ GQ  T+ + LE+++ G +PII  ILE+R+L K++STY + LP  I K
Sbjct: 529 NQLELPAAKKTRGGQASTSQEVLEKLS-GQHPIIDTILEYRKLEKLRSTYLEPLPRLIGK 587

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
              RVHT ++  +T TGRL+S  PNLQNIPI+  LGQ++R  F +     LISADYSQ+E
Sbjct: 588 DG-RVHTTFNQLATATGRLSSSNPNLQNIPIRGSLGQRMRSCFTASQGNLLISADYSQVE 646

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LAH +K   L   F    DIH   A+ ++  + E+V+   RR+AKTINF +IYG+ P
Sbjct: 647 LRVLAHYSKDPTLLTAFLEGADIHTRTASLLYEKSQEEVTADERRNAKTINFGLIYGMGP 706

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
            +LA +L    +EA  +I+RYF     I ++ ++ ++  ++ GYV TI GRR    +I+S
Sbjct: 707 QKLAQELNTTLNEAKKFIQRYFEHLQAIKKFYDQVEHSAKEYGYVTTIAGRRRLLPDIHS 766

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               ++ +  R AIN  IQGSAADI + AM++VH      K+  +++LQ+HDELV E PE
Sbjct: 767 ENIQLQALARRQAINTIIQGSAADIIKIAMLTVHGDTTLAKMDAQLILQVHDELVVEAPE 826

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +      + I   M         L VPL     +  +W   +
Sbjct: 827 DNAKEVGKRIAMLMSNVTPGGKPLIVPLVTQWSIGYDWGSAH 868



 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 147/290 (50%), Gaps = 9/290 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            E+ ++L+DGS+FIYR FYA   + R  DG P +A+     +  K+L+  + +    +F 
Sbjct: 8   SEDPIYLMDGSAFIYRGFYANQSMQR-SDGFPTSALFNIGRIFLKILREEQPK----YFV 62

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            + D P   FR+ ++P YKA R   PE L+ Q+  ++    + G+        EADD +A
Sbjct: 63  FVLDGPGTNFRHTLFPLYKAQRSPAPEALIKQIEPIKRLVISLGLCLTVASNSEADDCLA 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDIEHVIKKWGIPPEKMV 180
           +  +   ++ + + +I++DKDL Q +     ++D     E+   ++   +  G+ P +  
Sbjct: 123 SIAHRY-RDNYPIVLIASDKDLKQCLDKNVLMWDPASKAEKITTLKSFKEDEGLLPSQWP 181

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            +QA+ GDS DNIPGIPGIG KTA  + Q++ +LE+I  N S +     ++    + +  
Sbjct: 182 DVQAIIGDSSDNIPGIPGIGLKTAKKIFQDFPSLESIKDNFSSLPLP-VQKKFDGHLDAM 240

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            L R+L  L T   I + ++ + +   N    ++ L+  E   L      
Sbjct: 241 FLYRQLTTLSTTECIDLQIDTIKVGPINVQETLTILREFELVSLEREFMA 290


>gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington]
 gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I
 gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi]
 gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 872

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 214/522 (40%), Positives = 297/522 (56%), Gaps = 30/522 (5%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              N+   KI +++K+           +   ED+ LM Y L +G    ++          
Sbjct: 380 LLTNKSIKKITYSLKHLLKFYANQSHKITAIEDLELMQYTLSAGLVQKNL---------- 429

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
              E L             D+ + E A    N I      L   L   K   +Y  +D P
Sbjct: 430 -FAETLTK-----------DNIINESAKIVINFISLYKQTLLA-LQKNKAFRLYREIDLP 476

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
              ++ +ME  GI++D + L Q+S E    +L +EE I+ LSG KFN++S KQL +ILF 
Sbjct: 477 TCFILDKMEKIGIKVDANYLHQLSDEFGTEILKIEEEIFALSGTKFNIASQKQLSEILFK 536

Query: 636 KLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           K++ PSG    KT  + T A  L++++     I   +L WRQL+K+K+TY DSLP  IN 
Sbjct: 537 KMQLPSGNTLAKTSSYSTKAGILKKLSEDGYHIATLLLRWRQLTKLKNTYTDSLPKQINN 596

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            T+R+HT +   ST TGRL+S EPNLQNIP ++  G KIR+AFI+    KLISADYSQIE
Sbjct: 597 ITKRIHTTFLQTSTTTGRLSSQEPNLQNIPTRSSDGNKIRQAFIAEDGYKLISADYSQIE 656

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRIL+HIA +  L Q F N  DIH   A +IF +   +++ + RR AK INF IIYGIS 
Sbjct: 657 LRILSHIANVDVLKQAFINKEDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISA 716

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F LA QL +    AA+YIK+YF  + G+ EY+ +TK +  +NGYV   FGR+     I+ 
Sbjct: 717 FGLAKQLNVSNGTAAEYIKQYFAEYKGMQEYMVQTKAYANRNGYVTNFFGRKCFIPLIHD 776

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
            K  ++   ERAAINAPIQG++ADI + AMI + + +E  KL T+++LQIHDEL+FEVPE
Sbjct: 777 KK--LKQFAERAAINAPIQGTSADIIKIAMIKLAQEIEKRKLKTRLILQIHDELLFEVPE 834

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            E+     II   ME       N+ VP+   I+  NNW+E +
Sbjct: 835 IELELVIPIIKKIME----YSTNIDVPIITEIRAGNNWKEIH 872



 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 126/320 (39%), Positives = 185/320 (57%), Gaps = 6/320 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+N L L+DG  F++RA+YA   LS    G PV A+ GF +ML KLL + + +    +
Sbjct: 1   MTKKNTLLLIDGYGFVFRAYYAQQSLSSAK-GEPVGALYGFTSMLLKLLSDFKPQ----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A++FD     FR++IY +YKANRP  PE L+ QLPL+R          +E  G+EADDI
Sbjct: 56  GAIVFDSGGKNFRHKIYQNYKANRPTPPEDLIGQLPLIRDVASHLNFAILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL+S    +YD +K + I  + VI K+G  P+K+ 
Sbjct: 116 IATFATKTITLGKEVIIISSDKDLLQLMSKNIKIYDPIKCKYITEDDVIIKFGTTPDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  +I   K+R+ +    E A
Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQISSIKQRKTLQNSREAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S +L+ L ++V +   L +L     N  +LI FL+   F  L  RV   +     + E
Sbjct: 236 LISWRLIGLDSNVDLDFNLNNLEWSHPNSEKLIGFLQKYGFKSLYKRVENLFYIKINDHE 295

Query: 301 PVVLDINTTENKGIAIETEI 320
            +V D   TE K I+  +E+
Sbjct: 296 EIV-DNKVTEAKEISNASEL 314


>gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
 gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
          Length = 843

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 185/516 (35%), Positives = 288/516 (55%), Gaps = 33/516 (6%)

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
                  H+ K         G+ +RG   D  L  Y+   G  S+D+ ++A +       
Sbjct: 351 PERPLQVHDAK---------GVGVRGAHFDTYLAGYLAKPGLGSYDLDALATE------- 394

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
                 +    ++      V   A   + ++  L   L  +L    L  +Y  ++ P+ D
Sbjct: 395 ------RGISDVEASHADPVVREAARRAALVRALAPRLDAELREMGLSRLYYEVELPLAD 448

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+++ME  G+ +D   L++V  EI + +  LEE I++  G  FN+ SPKQL ++LF +L 
Sbjct: 449 VLAEMERVGMPVDARTLEEVGREIERRIAELEEAIFEDVGHPFNIGSPKQLSEVLFEELG 508

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   +TKTG + T A+ L+Q+   ++PI + I+ WR+L+K+K TY + L   + +   R
Sbjct: 509 LPPVRRTKTG-YSTDAKVLQQLAL-EHPIAERIIAWRELAKLKGTYVEGLLKLVGEDG-R 565

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +HT  +  +T TGR++S  PNLQNIP++T+ G +IR AF + P + L+ ADYSQIELRIL
Sbjct: 566 IHTTLNQTTTATGRISSDSPNLQNIPVRTETGMRIRDAFTASPGRLLVVADYSQIELRIL 625

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH+++   L + F+N  DIH   AAE+F V  E V+P++RR AK +NF I+YGIS + LA
Sbjct: 626 AHMSREPALVEAFKNGEDIHTRTAAEVFDVRPESVTPELRRRAKMVNFGILYGISGYGLA 685

Query: 819 TQLR-IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           T+L  +  +EA  YI+RYF R P + E+I K+     + GY  T+FGRR +  E+ +   
Sbjct: 686 TRLGNVHPAEADRYIQRYFERHPRVTEFIRKSLAEAEELGYATTLFGRRRYVPELRNKNK 745

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           ++R + ER A NA +QGSAADI + AM+ +   L    L   ML+Q+HDELVF+V  + +
Sbjct: 746 NVRKLGERIAFNARVQGSAADIIKVAMVDLAPRL--GPLGADMLMQVHDELVFDVDRDRV 803

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              + +    M  A     +L  PL+V +K    W 
Sbjct: 804 EEVAALAAERMVAA----YDLDPPLEVEVKAGERWG 835



 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 102/303 (33%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            ++L+DG S +YRAFYA P       GLP NA+ GF +M+ KLL +  +        V++
Sbjct: 13  RVYLIDGYSLLYRAFYALPQSIATSSGLPTNALYGFTSMVLKLLDSDEELG----IGVVW 68

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D     FR E+YP+YKA R  +PE L  QL  +    +A  IP + ++GFEADD++AT +
Sbjct: 69  DGGLPAFRTEVYPEYKAQRSAMPEELRVQLDHLDEILEAMNIPVVRVEGFEADDVLATVS 128

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
                EG  + I++ D+D MQLV     +  T +     +      V++++G+ PE++  
Sbjct: 129 RRLP-EGVELYIVTGDQDAMQLVDGRVRVLRTTRGVSETKVYGRREVMEEYGVSPEQIPD 187

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +AL GD  DNIPG+ GIG K+AA LL+ +G+LE +      ++ +  R  + E  E A 
Sbjct: 188 YKALVGDPSDNIPGVRGIGPKSAAALLRRFGSLEALYERLEEVEARGTRRKLEEGRENAF 247

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS +L  +R D P+    E L             L+  EF  L  R+A          +P
Sbjct: 248 LSLRLARMRFDAPVQFDPERLRFRGVAPGVRDVLLRRYEFRSLEPRIAGLPVSGGGRPQP 307

Query: 302 VVL 304
              
Sbjct: 308 ESA 310


>gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
 gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
          Length = 837

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 183/641 (28%), Positives = 304/641 (47%), Gaps = 37/641 (5%)

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKI-VNTKDIQQWVQKLETIGSASFKIITDTM 399
            N ++      L  ++K +    +  +YT+   +       +  LE         +    
Sbjct: 229 ANRDKAELSYMLGTIRKDAPIDTDPAAYTRRPGDPTAAAHLLAGLEMHKLIDRWQLETGS 288

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKF 456
               ++    + + L+  + +   +           +  S       +  L     L   
Sbjct: 289 TPAAAE----SAAPLEAVEPSPLPLVVEGRLYLAQNADGSWYAVQDGQVFLPGTDRLAAL 344

Query: 457 FENEHFLKIGHNIKYDKLV-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            +++  L +  + K    + L R GI      D  L +Y+L+   S + + ++A ++   
Sbjct: 345 LDSDADLWV-FDAKPLYHLALDRGGIGKAIHFDGKLAAYLLNPSASGYAVKNLAGEY--- 400

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                            +  +   E A  ++ V+  L   L   L       +++ ++ P
Sbjct: 401 ----------------DVPAAFTCE-AAPDAGVLAALLDKLAAALDESGQRKLHDEMELP 443

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
           +  V++ ME  G  +D D ++     +   L  + ++IY+  G +FN++SPKQLG+ LF 
Sbjct: 444 LARVLADMERIGFAVDADGIRAFGDSLRGELDGILQSIYEEVGYEFNVNSPKQLGEALFD 503

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           KL  P   KT  G     A    +     +P+I  IL++R  +K+ STY + L +     
Sbjct: 504 KLGLPPRKKTSRGYSTDAAT--LESLRPYSPVIDQILKYRTYAKLLSTYVEGLLSA-QAA 560

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
             RVH+ +      TGR++S EPNLQNIPI+T+LG ++R  F++   K+L+ ADYSQIEL
Sbjct: 561 DGRVHSTFIQTEARTGRISSTEPNLQNIPIRTELGSRLRGFFVAGAGKELVDADYSQIEL 620

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           RILAHI     + Q F +  DIHR  AA+I+ +   +V+PQ+R  +K INF I+YG   F
Sbjct: 621 RILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVTPQLRSASKAINFGIMYGKGAF 680

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
            L+  L +   EA  ++K Y   FP +  Y++      ++ GYVET+FGRR    E+ S 
Sbjct: 681 SLSKDLDVSVKEADAFLKTYLATFPKVDGYMQDCIAHAKEKGYVETLFGRRRALPELASS 740

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
              +R   ER A N PIQG+AADI + AM+ V + L D KL  ++LLQ+HDEL+ E PE 
Sbjct: 741 NFQVRASGERMARNTPIQGTAADIIKLAMVHVWQRLRDEKLEARLLLQVHDELIVEAPEA 800

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E+    +++   ME+     +   VPL  ++     W E +
Sbjct: 801 EVEEVKRVLREEMEQV----VQYSVPLTTDVGTGKTWLEAH 837



 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/332 (31%), Positives = 165/332 (49%), Gaps = 11/332 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++DG+S + RAF+   LL+ K DG   NAI GF N+L  LL   + ++     A+ +
Sbjct: 2   KLMVLDGNSLVNRAFFGIKLLTTK-DGRYTNAIFGFQNILLNLLSAHQPDA----VAIAW 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y  YKA R  +PE L  Q+P+++   +  G   +  +G+EADDI+ T  
Sbjct: 57  DERAPTFRHKAYDGYKATRHGMPEELAQQMPVLKELLKDLGFVQVSKEGWEADDILGTLA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQ 183
              E +G    + + D+D +QLV   T +     +E   +D   + +K+G+ P +++ ++
Sbjct: 117 AACEAQGGTTLLATGDRDSLQLVDDATTVLLATNKETIPMDPAAIQEKYGVTPAQLIDVK 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR--IKQKKRRENILEYAETAR 241
           +L GDS DNIPG+PGIG KTA  L+Q++G+L++I  +     IK   +R  +    + A 
Sbjct: 177 SLMGDSSDNIPGVPGIGEKTALALVQKFGSLQSIYDHLEDPAIKPG-QRTKLGANRDKAE 235

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA-TTYDCDAANIE 300
           LS  L  +R D PI            +       L  LE  KLI+R    T    AA   
Sbjct: 236 LSYMLGTIRKDAPIDTDPAAYTRRPGDPTAAAHLLAGLEMHKLIDRWQLETGSTPAAAES 295

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFS 332
              L+        + +E  +        S ++
Sbjct: 296 AAPLEAVEPSPLPLVVEGRLYLAQNADGSWYA 327


>gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri]
          Length = 869

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 180/529 (34%), Positives = 288/529 (54%), Gaps = 29/529 (5%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514
           F  +  + K+ ++ K   + L R  I ++  E D+ML  YV +S    + + +    +++
Sbjct: 358 FLNDNKYQKLTYHAKSLIVALARDNIFVQNIEYDMMLAGYVYNSNA-KNSLDT----YIN 412

Query: 515 YTRKE--------ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
              K+          K  K  IP D I   ++     E ++ I +L   +   L   +  
Sbjct: 413 LFEKKQILTDEFFYGKGVKKQIPADVI---KLGHFIGEKASYIHKLRPKIIELLKTNQQY 469

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +Y  ++ P+   +++MEI G+++DQ  L   +  I K +  L   I D++ ++ N +SP
Sbjct: 470 DLYHNIELPIAFALARMEINGVKVDQYELTTQTLRIEKIVQELNNEINDIAQKEINPNSP 529

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQ+ ++LF     P   K       +TAQ+  +    ++ II  IL++R+  K+ STY  
Sbjct: 530 KQISELLFQNFSLPDRKK------GSTAQETLEEIKNNHVIIPKILDYRKYQKLYSTYLK 583

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745
            +  +I    + VHT Y    T TGRL+S+EPN+QNI I+  + +++R+ F+ S P   L
Sbjct: 584 GMEKYIFADGK-VHTIYKQTLTNTGRLSSVEPNMQNISIRDHIQKEVRKIFVVSSPDNIL 642

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           +S DYSQIELRILAH++K   L   F N+ DIH   A +IF ++ ++++P +RR AK +N
Sbjct: 643 LSCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKDEITPNIRRSAKAVN 702

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F IIYGIS F LAT L I  ++A   I  Y+ +FP I  +I+K   F +QNGYV TIF R
Sbjct: 703 FGIIYGISDFGLATDLNISVAKAKAIINNYYQQFPTIKAFIDKQVEFCKQNGYVTTIFNR 762

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           + +  EIN      R   +R A+N PIQGSAADI + A+ ++ +      L  K++ QIH
Sbjct: 763 KRYVSEINDRNYMQREFGKRIAMNMPIQGSAADIIKIALKNIDQEFLKLNLKAKIIAQIH 822

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+FE+P+ E+    +I+   ME +      L V L V++K   +W +
Sbjct: 823 DELIFEIPQVELIQVQKIVKILMEDST----KLDVKLIVDMKTGLSWYD 867



 Score =  297 bits (761), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 118/401 (29%), Positives = 187/401 (46%), Gaps = 19/401 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + L+DG+S ++RAFYAT     + +  DG P NA+  F NML K+L+ +   S     
Sbjct: 2   KKVLLIDGNSLLFRAFYATAYNGEMLKSLDGTPTNAVYAFTNMLNKILKANNYYS----V 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD     FR+++  DYK  R K P  L+ Q P+V+    ++ IP +E +G+EADD++
Sbjct: 58  VVAFDKGKKNFRHDLLVDYKDGRSKTPNELIVQFPIVKEFLDSYQIPYLEQEGYEADDLL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEK 178
                +AEKE F V I S+DKDL QL++  T +    +    + ID   +I KWGI P +
Sbjct: 118 GCLAMLAEKEDFYVDIFSSDKDLYQLITNKTNILVPRQGDSADVIDEAALIAKWGIKPLQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +  L+ L GD  DN+ G+P +G KTA  L++EY ++EN+  N   IK    ++N+L + E
Sbjct: 178 VPDLKGLMGDPSDNLKGVPKVGEKTAIKLIKEYHSIENLYDNIEHIKGA-LQQNLLNHKE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           +A L +K+  +  D    I LEH        N   L+ F         + ++    D D 
Sbjct: 237 SALLCKKIATIFCD----INLEHFTFTSFSPNHETLMQFYLKYNMNSFVTKLFNNQDNDI 292

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
            N    V  I    ++     T +  +   +    S +       +           +  
Sbjct: 293 QNSNIKVKIIEEWRSEFNENNTTVYLELLDENYHTSEIIGFGIVNSKGVFYFDYIHAKHD 352

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
           KL    +N++ Y K+  T   +  +  L         I  D
Sbjct: 353 KLWHQFLNDNKYQKL--TYHAKSLIVALARDNIFVQNIEYD 391


>gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191]
 gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191]
          Length = 862

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 187/532 (35%), Positives = 287/532 (53%), Gaps = 26/532 (4%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
           + LT+E L  +++   N+  LKI +++K+    L      +    D+ L +Y L+ G   
Sbjct: 351 DNLTQEELLKIEELANNKQILKISYDVKFTLRALDVTPKEIINCFDVRLAAYSLNPGADI 410

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
               ++A ++L                   I     +E     +  I  L  +L   L  
Sbjct: 411 -GFKALAAQYLDVI----------------IEPKDEKEFLTLQNQYIWSLKEVLERDLKE 453

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
           +    ++  L+ P+I V+  ME  G+ +D+  L+  S  +   + +++ +I   +  + N
Sbjct: 454 KDQFKIFNELELPLITVLLAMEEIGVLVDKAWLENFSKTLEGEIAAIQNDINKDAQREIN 513

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG +LF +LK PS  KTKTG   +T +++ Q     +PI+K ILE+R  +K+KS
Sbjct: 514 VNSPKQLGALLFDQLKLPSVKKTKTGY--STDEEVLQQLVNLHPIVKKILEYRSNAKLKS 571

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY D+L   +     RVHT+     T+TGRL+S  PNLQNIPI+T  G+ +RRAF++   
Sbjct: 572 TYVDNLI-MLADGNSRVHTYLDQTGTVTGRLSSSSPNLQNIPIRTPKGRMLRRAFVAEGG 630

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           K L+S DYSQI+LR+LAH ++ + L   F+   DIH   AAE+FGV  E VS +MR  AK
Sbjct: 631 KTLLSVDYSQIDLRLLAHESQDSVLVNAFKEGGDIHTKTAAEVFGVMREMVSDEMRSSAK 690

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            INF IIYG  P  L+  L I   EA +YI  YF  + G+ E+I+K     R+ GYV+T+
Sbjct: 691 AINFGIIYGQGPMGLSQNLNISVREAKEYIDNYFAVYKGVREWIDKNIALARERGYVKTL 750

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            G   +  E       + +  +RAAIN  +QG +AD+ ++AM  +    +      KMLL
Sbjct: 751 LGHIRYLPEFKMGSGHMASFAQRAAINTIVQGGSADVIKKAMADIFNHYK--GTEVKMLL 808

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q+HDEL+FE+PE+ +   + +I + ME      I L+VPL    K   NW E
Sbjct: 809 QVHDELIFELPEKNLLKEAAVIKNKMEH----TIELKVPLLAEAKTGVNWYE 856



 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 124/469 (26%), Positives = 206/469 (43%), Gaps = 23/469 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             +  +++ D  +F++R ++A P LS    GL V A+ GF   L KL++  +      + 
Sbjct: 3   ADKKTIYIADAHNFLHRNYHALPKLSTSQ-GLEVGALYGFVRWLVKLVEEKKPH----YV 57

Query: 62  AVIFDY-PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           AV FD     T R +++ DYKA+R  + E LL QL L R      G+    +QG EADDI
Sbjct: 58  AVCFDSRGGSTKRKKMFSDYKAHRKPVDEALLTQLQLAREVVSGMGLKVFAVQGIEADDI 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWGIPPEK 178
           I      +  EG    + ++DKD +QL++    L+     KE     ++V +K+ I  + 
Sbjct: 118 IGFIAKKSVAEGADAVLATSDKDALQLLNEHIKLWPAGAAKESLKGPDYVKEKFNIAQKY 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKK-RRENILE 235
           +    A+ GDS DN+PG+ G+G KTAA L+  +G LE+I+    A   K KK   + I++
Sbjct: 178 LTDYLAIVGDSSDNVPGVAGLGPKTAAELINNFGYLEDIIKEAKAGNPKIKKGAAQKIID 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               A LS++LV L  ++P+   LE  +       +L       EF  L++   +    +
Sbjct: 238 NEAVAILSKQLVTLDENIPMDFTLEDAVFSPPAPAKLSELFAKYEFKNLLSAFDSARPKN 297

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               E    D   TE K      E+     IK   F    +    I+++   Q   LE L
Sbjct: 298 TPEGELFSQD---TEIKQGISFNEVV--NKIKDKMFIQTDENFVLISADS--QTCCLEEL 350

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
             L+Q  +      KI    + +Q ++    +      +     +  +   + +A  +L+
Sbjct: 351 DNLTQEELL-----KIEELANNKQILKISYDVKFTLRALDVTPKEIINCFDVRLAAYSLN 405

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
              D  FK         +   +D     TL  + +  LK+  E +   K
Sbjct: 406 PGADIGFKALAAQYLDVIIEPKDEKEFLTLQNQYIWSLKEVLERDLKEK 454


>gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C]
 gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C]
          Length = 483

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 267/487 (54%), Gaps = 10/487 (2%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +Y++  GR S  +  ++ ++L    +      + +   D  +++      +  + 
Sbjct: 2   DTALAAYLVKPGRRSFALDVLSVEYLGRELQPPAADGQLAFGADDTAEADA---LMAQAR 58

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L L      KL     + +   ++ P  ++++++E  GI  D+D ++ +  + +  + 
Sbjct: 59  AVLDLGDAFTAKLPEVGAVELLHEMELPTSELLARLERAGIAADRDHMEGMEQQFAGAVQ 118

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
              +  +   G +FNL SPKQL ++ F +L  P   KTKTG               D+ +
Sbjct: 119 QAVKEAHAAVGHEFNLGSPKQLQEVFFGELDLPKTKKTKTGYTTDADALAWLATQTDHEL 178

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
              +L  R+ +K++ T  + L   I     RVHT +S  +  TGRL+S +PNLQN+P++T
Sbjct: 179 PVIMLRHREQAKLRVT-VEGLVKSIAADG-RVHTSFSQTTAATGRLSSTDPNLQNVPVRT 236

Query: 728 DLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           D G+ IRR F+     + L++ADYSQIELR++AH+++   L + F +  D+H  VA+++F
Sbjct: 237 DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVF 296

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV   +V  +MRR  K +++ + YG+S F LA QL I  +EA   ++ +F RF G+ +Y+
Sbjct: 297 GVERSQVDAEMRRKIKAMSYGLAYGLSAFGLAQQLNIEPAEARGLMETFFERFGGVRDYL 356

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           ++  +  R  GY  T+FGRR +  ++NS     R   ER A+NAPIQG+AADI + AM+ 
Sbjct: 357 QRVVDEARATGYTATVFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLR 416

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V K++ +  L ++MLLQ+HDE+V E+   E     +++   M  A    + LR PL V++
Sbjct: 417 VDKAIAEAGLKSRMLLQVHDEIVLEIAPGEAERVEELVRREMGAA----VELRAPLDVSV 472

Query: 967 KVSNNWQ 973
            V  +W+
Sbjct: 473 GVGGDWE 479


>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
 gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
          Length = 874

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/491 (33%), Positives = 254/491 (51%), Gaps = 23/491 (4%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           + D+ L +Y+LD  + ++    +                  ++    +S       A   
Sbjct: 407 WFDLGLAAYLLDPEQRNYGFPRLRDSLF----------ADPTVDASAVSPDDTARAAALL 456

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           +        +   +L    L  + ERL+ P+I V+  ME  GI +D   L    AE++ +
Sbjct: 457 A-------EVYTARLDTAGLTDLVERLELPLIPVLLDMERAGIGVDLRSLAAFGAEVATD 509

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L  LE+ ++ L+G  FN  S +QLG+ILFT++      KT  G    T+QD  +   G N
Sbjct: 510 LTRLEKELHTLAGHPFNPRSSQQLGEILFTEMGLTPKGKTPGGAAS-TSQDALERLAGSN 568

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P++  ILE+R+L K++STY D LP   +    R+HT  +  +T TGRL+S  PNLQNIPI
Sbjct: 569 PLVDRILEFRKLEKLRSTYLDPLPKLADADG-RIHTTLNNMATATGRLSSSNPNLQNIPI 627

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +  LG+++R  F++ P K L++ADYSQIELR+LAH++    L   F    DIH   A+ +
Sbjct: 628 RGPLGRRMRECFVAGPGKTLVAADYSQIELRVLAHLSGEPALLSAFAAGADIHARTASLL 687

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           F     ++ P  RR AKTINF ++YG+ P +L+  L I    A  +I +YF R  G+  +
Sbjct: 688 FDKPEAEIGPDERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIAKYFERLSGLSAF 747

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
            +      +  GYV T+ GRR    +I S  S + +   R AIN  +QG AADI + AM+
Sbjct: 748 YDNIVESAKTQGYVTTLAGRRRLLPDIESKNSQLASQARRQAINTVVQGGAADIIKMAML 807

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           + HK  +  +    M+LQIHDEL+ E P +    A + +   M       I L VPL V+
Sbjct: 808 AAHKDADLKRAGAVMVLQIHDELLLETPMDTADAAGKRLSDLM----CGVIKLAVPLVVD 863

Query: 966 IKVSNNWQEEN 976
               + W + +
Sbjct: 864 WGTGHTWGQAH 874



 Score =  244 bits (624), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 102/337 (30%), Positives = 154/337 (45%), Gaps = 12/337 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + +FL+DGS+F YR ++A   ++R  DG P +A+     M+++LL    KE    H    
Sbjct: 12  DPVFLIDGSAFFYRGYHAFRDIAR-SDGFPTSALF----MIFRLLFKLVKEQHPRHLVFF 66

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    +FR++IY DYKANR  +PE L  Q+  +    + FG   I  +  EADD IA+ 
Sbjct: 67  LDGRGPSFRSKIYTDYKANREAMPEPLARQVEPLLDGLRLFGARVIVPEDAEADDGIASL 126

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDIEHVIKKWGIPPEKMVCL 182
                     V I+  DKDL Q +     LYD     E+         + GI P     L
Sbjct: 127 AARFRDR-LPVVIVGADKDLKQCLDERVVLYDPSGKAEKLTTKAEFTAESGIEPASWPDL 185

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GD+ DNIPG+PGIG KTA  +L+++  LE++  N   +K    R+ I    E    
Sbjct: 186 QALVGDTSDNIPGVPGIGIKTALGILRDHPTLEDVRDNLPDLKA-TVRKKIEPAIEDVFT 244

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR---VATTYDCDAANI 299
            R+L  LRTD+   + L    L   +   L +FL++ EF  L      +++    ++   
Sbjct: 245 YRELTRLRTDLLPEVSLADTALTPPDAEGLRAFLESYEFRTLARDIPGLSSLAPTESKRE 304

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
                 ++  ++           D   K      L D
Sbjct: 305 TAASRRLSLFDDPPAGNAATPASDPAPKPVPAGELPD 341


>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
          Length = 831

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/491 (32%), Positives = 261/491 (53%), Gaps = 30/491 (6%)

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D+ L +Y++D GR ++ ++ + +++   T    L   +SS+    +   +         
Sbjct: 368 FDLELAAYLVDPGRRNYSLSDLREQFFLTTP---LGKGESSLSAVGLLLDR--------- 415

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
                    L  ++   ++  +   ++ P+  ++  ME  GI +    + +    I + +
Sbjct: 416 ---------LESEIGSLEMGDLLRSVEIPVARIIVGMEKAGIPVSLTRILEAKKTIEEKI 466

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT-TAQDLEQINCGDN 665
             LE  IY  +G+ F++ SPKQ+G++L+ +L  P   +T  G     T ++  +     +
Sbjct: 467 AGLEAEIYREAGQTFSILSPKQVGEVLYGRLGLPPPRRTGKGSGAPSTDEEALEGLAALH 526

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P+ K IL +RQL K  STY   +         R+H  ++     TGRL+S  PNLQNIP 
Sbjct: 527 PLPKLILSFRQLRKFLSTYLLPMEEG-RGSDGRLHGQFNQTVAATGRLSSSRPNLQNIPA 585

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +T+LG  +RR F++P    L+SADYSQIELR+LAH +    L + F    DIH   AA +
Sbjct: 586 RTELGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAALL 645

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FG     V+ + RR AKTINF I+YG+S + L+  L +  +EA   I RYF    G+  Y
Sbjct: 646 FGEP---VTSESRRRAKTINFGILYGMSAYSLSQDLGVEPAEAQGIIDRYFSVVAGVGPY 702

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
            EK +   R+ G + T+ GR     EI S   ++R   ER A+N+ +QGSAAD+ ++AM+
Sbjct: 703 FEKIREEARRTGRIRTLLGRIRPIPEIRSDNRNVREYGERMAVNSVLQGSAADLVKKAMV 762

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            + +++    L  ++LLQ+HDEL+FEV E++  + S ++  +ME A    I L VPL V+
Sbjct: 763 DLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLSAVVRKTMEGA----IPLSVPLPVS 818

Query: 966 IKVSNNWQEEN 976
           I    +W E +
Sbjct: 819 IGRGADWVEAH 829



 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/294 (33%), Positives = 147/294 (50%), Gaps = 7/294 (2%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA 69
           +DG  +I+RA+Y + +     DG+P  A   F NML  LL          + AVIF+   
Sbjct: 1   MDGFGYIFRAYY-SKVSFMTRDGMPTGAFTVFGNMLLSLLGTFHPR----YLAVIFESRT 55

Query: 70  VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY--I 127
              R EI P+ KANR   PE L  Q+PL+    Q   IP +   G+EADD IA  +   +
Sbjct: 56  GNVREEILPEIKANRTPPPEELTLQIPLIESLIQGLAIPLLSTDGYEADDTIAALSRAWL 115

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           A+     V ++S DKDL+ LVS    +YD + ++      V +KWG+ P ++  L ALTG
Sbjct: 116 AQDPDARVLVMSADKDLLSLVSDRLGVYDPMTQKLFGPAEVREKWGVEPGQIPDLLALTG 175

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D +DNI G+PG+G KTAA LL    ++E+++     ++ +K R  ILEY +    ++ L 
Sbjct: 176 DGVDNIGGVPGVGPKTAAALLAGGLHVEDLVTRIESVRPEKLRPKILEYRDLILRNKSLT 235

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +L  D+ +    E L L       +      LE + L+ R+           E 
Sbjct: 236 ILHEDIAVDARPEVLALGPPRMDEIRDLAARLESSTLLARIEALAGGAVDGGEE 289


>gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 477

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 154/478 (32%), Positives = 264/478 (55%), Gaps = 10/478 (2%)

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLL 556
            GR S ++ +++ ++L         +    +     +D Q ++ A+   +  +L L    
Sbjct: 4   PGRRSFELDALSVEYLGRELSPAAAADSGQLAFG--ADEQAEQDALMIKARTVLDLGEAF 61

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           R +L       +   ++ P  ++++++E +GI  D+D L ++  + +  +    +  +  
Sbjct: 62  RGRLEEVGAAGLLSDVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHAA 121

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G +FNL SPKQL ++LF +L  P   KTKTG               D+ +   +L  R+
Sbjct: 122 VGHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIMLRHRE 181

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            ++++ST  + L   I+    R+HT ++     TGRL+S +PNLQNIP++TD G+ IRR 
Sbjct: 182 QARLRST-VEGLIKTISPGG-RIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRG 239

Query: 737 FISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           F+     + L++ADYSQIELR++AH+++   L + F +  D+H  VA+++FGV   +V P
Sbjct: 240 FVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTTVASQVFGVAKSEVDP 299

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           +MRR  K +++ + YG+S F L+ QL I   EA   +  +F RF G+ +Y+++     R 
Sbjct: 300 EMRRKIKAMSYGLAYGLSAFGLSGQLGIGADEARRLMDTFFERFGGVRDYLQRVVEEARA 359

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GY ET+ GRR +  ++ S     R + ER A+NAPIQG+AADI + AM+ V  +L   +
Sbjct: 360 IGYTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVDAALTAGE 419

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           L+++MLLQ+HDE+V E+   E     +++   M  A      LR PL V++ V  +W+
Sbjct: 420 LSSRMLLQVHDEIVLEIAPGERERVEELVRREMAGA----FQLRAPLDVSVGVGADWE 473


>gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
          Length = 845

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 179/633 (28%), Positives = 301/633 (47%), Gaps = 43/633 (6%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P  L    L+ L   P +     K ++  + +    ++   GS   K           + 
Sbjct: 252 PDCLSGAGLETLKTRPADPVELQKFLDEYEFKSLKNEI--PGSQELKHE------QSREK 303

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             +  +  ++++    + +   + L   +   +        E+        + E   K  
Sbjct: 304 GGVQKAWAEKEELPDCRGQITGLYLGQDSYLVALEDQEW--EVSKKTPPIEKLEFCKKYV 361

Query: 467 HNIKYDKLVLHRYGI---SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
            ++K               + GF DI L  Y+L+     +    I + +           
Sbjct: 362 FSLKDLYR--ENQDWMQEPVSGFFDISLGVYLLNPEERDYSFDRIFRTY----------- 408

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
                        ++  H    +   L++  ++  +L    LL + + L+ P++ V+ +M
Sbjct: 409 -----------APEIAVHRENRAVAALKIGQMVEKRLDAAGLLGLMQELEMPLVPVLCRM 457

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           E  GI ID         ++ K+L  L  +IY L+G++FN+ S +Q   +LF +L   +  
Sbjct: 458 ESAGIGIDLAAFDNFLRQVKKSLDDLTASIYSLAGKEFNIRSTQQTAQVLFDELGLKARR 517

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT  G + T+   LE +   D+ I+  IL++R L K++STY + LP  ++    R+HT +
Sbjct: 518 KTPKGAYSTSNVVLESMRR-DHDIVDLILQYRTLEKLRSTYLEPLPRKVDVGG-RLHTTF 575

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
           +  +T TGRL+S  PNLQNIPIK + G ++R  F     K L++ADYSQIELRILAH++ 
Sbjct: 576 NQLATATGRLSSSNPNLQNIPIKGEFGPRMRACFKPSKGKLLVAADYSQIELRILAHMSM 635

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L Q F  + DIHR  A  +F  +I++VS   RR AKTINF ++YG+ P +L+ +L I
Sbjct: 636 DPNLLQAFGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTINFGLLYGMGPQKLSRELSI 695

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              EA ++I  YF +   + ++ ++ +   ++ GYV T+ GRR    +INS  +++    
Sbjct: 696 SMEEAKEFISVYFSKLDRVRDFYQQIEEKAQEQGYVTTMAGRRRLLPDINSRNTNMAQQA 755

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
            R A+N  IQGSAAD+ ++AM++V    E   L + M+LQ+HDEL+ EV       A + 
Sbjct: 756 RRTAVNTVIQGSAADVIKKAMLAVDSDSELRSLGSVMVLQVHDELLLEVDAPVAQKAGER 815

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   M        +L VPL V      NW E +
Sbjct: 816 LARVMAGVE----SLEVPLLVEWGTGENWAEAH 844



 Score =  295 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 189/385 (49%), Gaps = 20/385 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K   +FL+DGSSF+YRAFYA P L R  DGLP NAI     ML K+++  + E    +  
Sbjct: 9   KNEPVFLIDGSSFLYRAFYAYPDLKR-SDGLPTNAIYIVIRMLLKIVKEEKPE----YMG 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              D    TFR+E+Y  YKA RP +PE L  Q+  +R A +  GIP    QG EADD+IA
Sbjct: 64  FFLDGKGPTFRHELYIPYKAQRPGMPEGLSAQIEPLREAVRILGIPEYTAQGLEADDLIA 123

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT--VKEEKIDIEHVIKKWGIPPEKMV 180
            YT I + +   V I+++DKDL QL+     L+D      E +D +   ++ GI PE+  
Sbjct: 124 GYTEIFKSK-HPVIIVASDKDLKQLLDDHVYLWDPGAKNAEILDCDGFRRETGIGPEQWP 182

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             QAL GDS DNIPGIPG+G KTA   L+++ +LE +      +K  K +E + E+ +  
Sbjct: 183 DYQALVGDSSDNIPGIPGVGPKTALNWLKKFPSLEELQAGLDELKP-KEQEKLREHMDDV 241

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            L R+L  L+ D      LE L     +   L  FL   EF  L N +  + +       
Sbjct: 242 FLYRRLTKLKPDCLSGAGLETLKTRPADPVELQKFLDEYEFKSLKNEIPGSQELKHEQSR 301

Query: 301 PVVLDINTTENKGIAIE--TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                      K    +   +I      + S   +L DQ  +++ +  P    +E+L+  
Sbjct: 302 EKGGVQKAWAEKEELPDCRGQITGLYLGQDSYLVALEDQEWEVSKKTPP----IEKLEFC 357

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQK 383
            +Y  +     +     + Q W+Q+
Sbjct: 358 KKYVFSLKDLYR-----ENQDWMQE 377


>gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E]
 gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I
 gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii]
 gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii]
 gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii]
 gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii]
 gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22]
          Length = 867

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 216/522 (41%), Positives = 300/522 (57%), Gaps = 30/522 (5%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              N+   KI +++K+           +   ED+ LM Y L +G    ++ +        
Sbjct: 375 LLTNKSIKKITYSLKHLLKFYANQSHQITAIEDLELMQYALSAGLVQKNLFT-------- 426

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                      ++  D I    + E A    N I      L  +L   K   +Y  +D P
Sbjct: 427 ----------KTLTKDNI----INESARIVINFISLYKQTLL-ELQKNKAFRLYREIDLP 471

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
              ++ +ME  GI++D + L ++S E    +L +EE I+ LSG KFN+ S KQLG+ILF 
Sbjct: 472 TCFILDKMEKVGIKVDANYLNRLSDEFGTEILKIEEEIFALSGTKFNIGSQKQLGEILFK 531

Query: 636 KLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           K++ PSG    KT  + T A  L++++     I   +L WRQL+K+K+TY DSLP  IN 
Sbjct: 532 KMQLPSGNTLAKTSSYSTRAGILKKLSEDGYHIATLLLRWRQLTKLKNTYTDSLPKQINN 591

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            T+R+HT +   ST TGRL+S EPNLQN+PI++  G KIR AFI+    KLISADYSQIE
Sbjct: 592 ITKRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSSDGNKIREAFIAEEGYKLISADYSQIE 651

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LRIL+HIA I  L Q F N  DIH   A +IF +   +++ + RR AK INF IIYGIS 
Sbjct: 652 LRILSHIANIDVLKQAFINKEDIHTQTACQIFNLKKHELTSEHRRKAKAINFGIIYGISA 711

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F LA QL +  S A++YIK+YF  + G+ EY+ +TK    +NGYV   FGR+     I+ 
Sbjct: 712 FGLAKQLNVSNSTASEYIKQYFAEYKGVQEYMTQTKACASRNGYVTNFFGRKCFIPLIHD 771

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
            K  ++   ERAAINAPIQG+ ADI + AMI + K +E+ KL T+++LQIHDEL+FEVPE
Sbjct: 772 KK--LKQFAERAAINAPIQGTNADIIKIAMIKLDKEIEERKLKTRLILQIHDELLFEVPE 829

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            E+     II   ME +     N+ VP+   IK  NNW+E +
Sbjct: 830 IEVEIVIPIIKKIMEHST----NMNVPIITEIKAGNNWKEIH 867



 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 127/320 (39%), Positives = 187/320 (58%), Gaps = 6/320 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K+N L L+DG  F++RA+YA   LS    G PV A+ GF +ML KLL + + +    +
Sbjct: 1   MTKKNTLLLIDGYGFVFRAYYAQKSLSSAK-GEPVGALYGFTSMLLKLLSDFKPQ----Y 55

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A++FD     FR++IY +YKANRP  P+ L+ QLPLVR     F    +E  G+EADDI
Sbjct: 56  VAIVFDSGGKNFRHKIYQNYKANRPLPPKDLIAQLPLVRDVASNFKFAILEKNGYEADDI 115

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT+       G  V IIS+DKDL+QL+S    +YD +K + I  ++V+ K+G  P+K+ 
Sbjct: 116 IATFATKTVSLGEEVIIISSDKDLLQLMSKNIKIYDPIKCKYITEDNVVTKFGTTPDKLR 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            + AL GD  DNIPG+P IG KTA+ L+ ++G++ENI  +  +I   K+R+ +    E A
Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITKFGSVENIFNSLDQISSIKQRKTLQNAREAA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            +S KL+ L ++V +   L +L     N  +L  FL+   F  L  RV   +D    + E
Sbjct: 236 LISWKLIGLDSNVDLDFDLNNLKWSPPNSKKLTGFLQEYGFKSLYKRVENLFDIKINDHE 295

Query: 301 PVVLDINTTENKGIAIETEI 320
            +V D   TE K I+  +E+
Sbjct: 296 EIV-DNKVTEAKEISNASEL 314


>gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 601

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 171/658 (25%), Positives = 280/658 (42%), Gaps = 74/658 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S FAV+F
Sbjct: 5   PLVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR+ +Y DYKANRP +P+ L  Q+ L+    +  G P + ++G EADD+I T  
Sbjct: 60  DAKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             +      V I + DKD+ QLV     L +T+    +D+  V +K+G+ PE ++   AL
Sbjct: 120 RSSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTA-ALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
            GD +DNIPG+PG+G KTA  LL+   G ++ +      +        K     + E+  
Sbjct: 180 MGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIRGAKTLAAKLEEHRA 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS +L  ++ DVP+ I L+ L   + +  +L+     LEF   I  +          
Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDLQRDAKRAGQE 299

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK----LFLER 354
           +      +   E     I  +   D  +K    + L    ++ N     +     L    
Sbjct: 300 LAVEEPTVEAKEAAYEVILEQSQFDAWLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAI 359

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
               + Y     SY  +    D    ++ L+        ++ D       +    AI+ L
Sbjct: 360 QTHEAAYIPLTHSYMGVPQQLDRDTVLKALK-------PLLEDPDKTKVGQHAKFAINLL 412

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                           L    +Q    +      IL       ++       H+      
Sbjct: 413 AN------------CALDGDQTQGIDLQGVRFDTILESY--VLDSTATR---HD------ 449

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
                        D ++  Y+  +  +  +IA                     +  D+I+
Sbjct: 450 ------------RDSLVAKYLTHTPINFQEIA---------------GKGAKQLTFDQIA 482

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             Q  ++A E +++ L+L  +   +L     L  V   ++ P++ V++ +E  G  +D +
Sbjct: 483 IEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIERQGALVDAN 542

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           LL   S E+   + +LE   + ++GE+FNL SPKQLG IL+ KL  P  +KT TGQ  
Sbjct: 543 LLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQAS 600


>gi|258539932|ref|YP_003174431.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
 gi|257151608|emb|CAR90580.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
          Length = 690

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 204/740 (27%), Positives = 334/740 (45%), Gaps = 116/740 (15%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L L+DG+S  +RAF+A           DGL  NAI  F NML  +L++ + ++ 
Sbjct: 1   MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDA- 59

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V FD    TFR   Y DYK+ R K P  LL QLP ++      GI   E++ +EA
Sbjct: 60  ---ALVAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T    A+  G+  TI++ D+DL QL +  T +  TVK     E    EHV +K G
Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +++ L+ L GD+ DN PG+  +G KTA  LL++YG++E                N+
Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIE----------------NL 220

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
               +  + S+               E+LI    +  +             +++   T D
Sbjct: 221 YANIDAMKTSKM-------------KENLIN---DKDKAY-----------LSKQLATID 253

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            DA    PV +D+                D        + L D  +K+N         L+
Sbjct: 254 RDA----PVTIDLA---------------DVKYNGPDLAKLRDFYTKMN-----MNSLLK 289

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           ++      P     Y+ + +    Q  +   +T    +F+I     +   ++ +   I T
Sbjct: 290 KIGGDVAKPSQPVHYSVLDD----QSILALTKTTEPLTFEIEMLADNYHTAEQVGFFIGT 345

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            ++          +  D+S+ T  +                K+  + +      + K + 
Sbjct: 346 KEE--------TYVSTDVSLLTIPEVA--------------KWLGDSNRDLTVFDGKRNI 383

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528
           +  HR G+ +     D++L SY+++   +S+D+  IA+      L        K  K  +
Sbjct: 384 VAAHRLGLHLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQV 443

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
           P DK+   Q        S  +  L   L   L  ++   ++  ++ P+  V+++MEI GI
Sbjct: 444 PEDKLLFEQF----ARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGI 499

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            ++   LK +  E S+++  LEE IY  +G KFNL+SPKQLG++LF KL  P   KTKTG
Sbjct: 500 TLNAQTLKDMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG 559

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T+ D+       +PI+++IL++R  +K+ STY   L         ++HT Y    T
Sbjct: 560 Y--STSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPD-HKIHTRYLQTLT 616

Query: 709 MTGRLASLEPNLQNIPIKTD 728
            TGRL+S++PN+QNIP + +
Sbjct: 617 QTGRLSSVDPNMQNIPARDE 636


>gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
 gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
          Length = 789

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 192/479 (40%), Positives = 282/479 (58%), Gaps = 14/479 (2%)

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP--- 558
            +D+  I +K +     E LK  K    I+      +++H  E   V ++    L     
Sbjct: 316 FYDLKEI-KKKVELDIDENLKDIKVISWINDPDSGGIKKHKDEQIEVFVKRVSSLAKSEF 374

Query: 559 -KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            KL   KL+ +Y+ ++ P+ID++ +ME  GI+I++  + +++ E+ +NL  +E  I+D  
Sbjct: 375 KKLKENKLVKLYKEIELPVIDILFEMEKHGIKINEKKVYEINDELEENLKEIERKIFDYC 434

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE-QINCGDN-PIIKNILEWR 675
            E+FNL+SPKQL  ILF KL      KTKTG   +     E +     +  +I  IL++R
Sbjct: 435 KEEFNLNSPKQLSFILFEKLGLEPAKKTKTGFSTSEEALQELKFKNPGHVELIDYILKYR 494

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           +LSK+KSTY  +L N++    +R+HT +    T TGR++S+ PNLQNIP+ +  G++IR 
Sbjct: 495 ELSKLKSTYTLNLLNYM-ADDKRIHTTFKQTGTATGRISSINPNLQNIPVGSIYGKRIRE 553

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F +    + +S DYSQIELRILA ++    L   F N  DIH   A EIFGV  E+V P
Sbjct: 554 CFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFINDEDIHNKTAKEIFGV--EEVDP 611

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + RR AK +NF IIYG+SP+ LA    I +SEA  +I+RYF+ +PG+  YI+      ++
Sbjct: 612 KHRRLAKAVNFGIIYGLSPYGLARDTGITQSEAKVFIERYFNLYPGVKNYIDSIIKEAKE 671

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GY ETI GR+    +INS    ++   ER AINAPIQGSAADI + AMI+++K L+  +
Sbjct: 672 KGYTETILGRKRFIKDINSANRMLKQRAERIAINAPIQGSAADIIKLAMINIYKYLQKTQ 731

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +  KM+LQIHDEL+FEV E+ +    Q   + ME      I L+VPLKVN     NW +
Sbjct: 732 IDVKMILQIHDELLFEVKEDIVEDFVQEFKNRMENV----IKLKVPLKVNYSTGKNWGD 786



 Score =  222 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 162/308 (52%), Gaps = 17/308 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DG S  YR FY TPLL+    G P + +  F N++  L +    E I     V+FD
Sbjct: 2   IVIIDGHSVSYRIFYKTPLLNNSK-GEPTSVLHSFINLIISLKEKLNPEKIY----VVFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T R++I+ +YKA R K PE L+PQ+  ++     FG+        EADDII T   
Sbjct: 57  SKGETERHKIHKEYKAQREKTPENLIPQIENLKKILPYFGVYVAYQDATEADDIIFTLIQ 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
             +KE   + +I+ DKDL QLV+    +YD   EE I+ + V +K+G+ PE++    AL+
Sbjct: 117 KYKKEN--IYLITKDKDLFQLVNDRVLIYDYQNEEIINRDKVKEKFGVYPEQIKDYLALS 174

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD  DNIPG+ G+G KTA  L+ E+G+L+N+  N   I Q K +E +L+  + A  S +L
Sbjct: 175 GDQSDNIPGVKGVGVKTAEKLINEFGSLDNVYQNIESI-QGKLKEKLLKGKDEAYFSLEL 233

Query: 247 VMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
           V L+        +E+L +     +   L + L+  E   +I R+      +  +   +V 
Sbjct: 234 VNLQY-------IENLEVYPPVNDDKGLKNILEHFELKTVIKRLFNEDITETIDEYELVD 286

Query: 305 DINTTENK 312
            +   ENK
Sbjct: 287 IVCEIENK 294


>gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 833

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 289/524 (55%), Gaps = 34/524 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIA 509
              K    ++  + +  + K          I +   F+D++L++++++S  +   +A + 
Sbjct: 343 EAFKALISSDTSI-VVDSSKSLYRFCLENNIEIANQFDDLLLLAFIVNSSIT--TMARLK 399

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            ++      E                    E     +  IL  +  L+ +    ++L VY
Sbjct: 400 DEF-GLWFHEYEG----------------MEKGAAFTQAILSQFNTLKTEANKIEVLSVY 442

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
           E ++KP++ ++S+ E  GI +D+ +L +++    + + +L   +Y+L+G +FNL+SPKQL
Sbjct: 443 EEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELAGMEFNLNSPKQL 502

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
            ++LF  LK P+  K      ++TA D+ +    ++ II  ILE+R+  K+ STYA  L 
Sbjct: 503 AEVLFDHLKLPTKKK------RSTAVDVLEGLIEEHAIIAPILEYRKYQKLYSTYAVGLT 556

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            HI+   + +HT ++  +T TGRL+S +PNLQNI ++ +  + IR+AF++     L+S D
Sbjct: 557 KHIHADGK-IHTSFNQHATQTGRLSSSDPNLQNISVRDEETRMIRKAFVASEGCTLMSID 615

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIELR+L+++A    + + F    DIH   A  IFGV  + V+  MRR AK++NF I+
Sbjct: 616 YSQIELRVLSYLADEKRMMEAFNGGHDIHSETAKAIFGV--DDVTSTMRRQAKSVNFGIV 673

Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
           YG+S + L+ QL I   EA  +I RY   +P I +Y++       ++GYV+T+F RR + 
Sbjct: 674 YGMSEYGLSKQLDITIPEARHFITRYNEIYPNITKYMDSVVEDCLRDGYVKTLFNRRRYI 733

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
            EI     ++++  +RAA+NAPIQG+AADI + AMI   + L  +   + M+LQ+HDELV
Sbjct: 734 PEIYDANRAVKDFGKRAAMNAPIQGTAADIIKIAMIKADELLTSNNYKSSMILQVHDELV 793

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           F+V ++E+     ++V  ME      I+L V    ++    +W 
Sbjct: 794 FDVYDDELEQIQDLMVSVMEHIVSWPIDLNV----SVDTGKDWY 833



 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 244/572 (42%), Gaps = 44/572 (7%)

Query: 5   NHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           N L L+DG+S ++RA+Y T      +   G+  NA+ GF  ML K ++        +H  
Sbjct: 2   NKLLLIDGNSMLFRAYYGTLSRGYMKSSSGVVTNAVYGFSTMLAKAIEIIN----PTHVL 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR++++ +YK  R ++ E L+ Q  LVR    A+ I   E+ G+EADDII 
Sbjct: 58  VAFDTKDKTFRHDMFDEYKGTRKEVDEELVSQFALVREFLDAYPIKRFELSGYEADDIIG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T + +     F V I+++D+D++QL+     +    K       +D   ++ + GI P++
Sbjct: 118 TMSRMYPD--FKVEILTSDRDMLQLIDDNVDVLLMKKGLTDLRLMDKTSLMDEMGIEPKQ 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +V ++AL GD+ DNIPG+P IG KTA  LL +Y   EN+ ++   IK  K  E I E+ E
Sbjct: 176 IVDMKALMGDTSDNIPGVPSIGEKTALKLLGQYTTFENLYVHKEEIKG-KMGEKIREFEE 234

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            AR+S KL  + T VP+ I L  +  E  N   L +F +  +   LI         +   
Sbjct: 235 QARMSYKLAEIHTSVPLDIDLSSIKYEIPN-ESLNAFYRKYDMNSLITDNYDVEVVEKET 293

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           IE   LD +  ++  IAI  E+D+   ++    S   +       E    + F   +   
Sbjct: 294 IEFTNLDSSWKKS-MIAISMELDKKGNLEGCYLSDGKENIYLTFGEMVGNEAFKALISSD 352

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH--SKPIAIAISTLDQ 416
           +   +++         ++  +   + + +   +F I+  ++           +     + 
Sbjct: 353 TSIVVDSSKSLYRFCLENNIEIANQFDDLLLLAF-IVNSSITTMARLKDEFGLWFHEYEG 411

Query: 417 KDDTSFKVETIFIDLS-VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            +  +   + I    + + T  +     ++ +EI   L        F  I  +      +
Sbjct: 412 MEKGAAFTQAILSQFNTLKTEANKIEVLSVYEEIEKPLVPILSKCEFRGINVDRSVLDEI 471

Query: 476 ----------LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
                     L      + G E      + L+S +    +A +    L       L ++K
Sbjct: 472 ALVTHQKIETLSNQVYELAGME------FNLNSPKQ---LAEVLFDHLK------LPTKK 516

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
                  + +  ++EHAI    +  + +  L 
Sbjct: 517 KRSTAVDVLEGLIEEHAIIAPILEYRKYQKLY 548


>gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411]
 gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411]
          Length = 801

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 176/508 (34%), Positives = 276/508 (54%), Gaps = 34/508 (6%)

Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
           YD   L   G     +  DI L SY+++                              + 
Sbjct: 324 YDFKELLTQGFQFEKYPFDIKLASYLVNPDS----------------------KGNPRVC 361

Query: 530 IDKISDSQVQEHA-IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            + I+D    +   +     IL+ +  LR  +    L  +  +++ P+ +V+  ME  GI
Sbjct: 362 FENINDEAFAKLMNLSEEEAILESYPFLREYIEGNNLNFLLSQVETPLSEVLVSMEKRGI 421

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID + L     E++  L + E+ I+ L+GE+FN++S K+L  ILF KL      KTKTG
Sbjct: 422 KIDSEYLTSFENELANKLYATEKQIHALAGEEFNINSTKELQRILFEKLGIKPIKKTKTG 481

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
              +T  +  Q+      I + I+ +R +SK+ STY     + ++ ++ R+HT ++   T
Sbjct: 482 Y--STDSESLQMLAQKYEIAQLIITYRAISKVISTYIRPFLDKMD-KSNRLHTTFNQTLT 538

Query: 709 MTGRLASLEPNLQNIPI-KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            TGRL+S  PNLQN+P    +L   IR++ ++P   KLI +DYSQIELR+LA ++K   L
Sbjct: 539 STGRLSSSNPNLQNLPAGDDELHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTL 598

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            ++F+N+ DIH   A +IFGV+   V   +RR AKTINF IIYG+    L+  L I + +
Sbjct: 599 IEIFKNNEDIHTQTAVKIFGVHPSMVDHHLRRMAKTINFGIIYGMGYVSLSKTLNISKDK 658

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A  +I++YF RF G+  YIE T     +NG+VET FGRR ++  INS    +    +RAA
Sbjct: 659 ARQFIEKYFERFAGVKSYIENTTEKATKNGFVETYFGRRRYFFNINSNNKRLAQFEKRAA 718

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +NA IQG+AADI + AM+ +++ L+   L   ++LQ+HDEL+ E  E+     + I+  +
Sbjct: 719 VNATIQGTAADIIKIAMVKLYEKLK--NLDAHIVLQVHDELLVEAKEDIAENVAGIVKDT 776

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEE 975
           ME A    +   +P+K N K++NNW E 
Sbjct: 777 MENA----VKFDIPIKTNTKIANNWYEA 800



 Score =  277 bits (709), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 117/291 (40%), Positives = 163/291 (56%), Gaps = 9/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              ++L+DGSSF+YR F+A   LS K  G+P   I GF  +L +L       +  ++ A+
Sbjct: 2   NEKVYLIDGSSFLYRFFFAIRGLSYK--GMPTGTIFGFAKLLLEL-----DAANPTYIAI 54

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR +I   YK NRPK+P+ L  Q+   +   +AFGIP IE+ GFEADD+IAT
Sbjct: 55  FFDTKAKTFREDILESYKKNRPKMPDELSIQIEPTKQLIKAFGIPIIELDGFEADDLIAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
           Y     K  F V II++DKDL QLV+    +YD  K+   D E V KK G+ PE++    
Sbjct: 115 YAEKL-KNDFEVIIIASDKDLFQLVNSNVKIYDPTKKVFYDREGVFKKLGVYPEQVADFL 173

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDSIDNIPG+  IG KTAA LL +Y N+E IL N   +K  K +E I +  +   L 
Sbjct: 174 ALVGDSIDNIPGVKSIGPKTAASLLAQYKNIEGILQNLDNLKP-KIKEAIEKEKDNLELY 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           RKL +     PI I LE +  ++ +  ++        F  L+  +   ++ 
Sbjct: 233 RKLTITDKKAPIKIELEAMKKKEKDIDKIQELFLKFGFKSLLKSLPVKHNT 283


>gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
 gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
          Length = 904

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/523 (32%), Positives = 259/523 (49%), Gaps = 22/523 (4%)

Query: 468 NIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           +    +  L   G  +     D+ L S+VL  G  S+D  ++A   L     E    + +
Sbjct: 387 DAPAVRSWLAENGYRLGAQVRDLSLESFVLRPGARSYDAEALASD-LGGASFEPKPRKPA 445

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLW-------LLLRPKL-IVEKLLHVYERLDKPMID 578
           +  + K S     EH       +             L  +         + + L++P+  
Sbjct: 446 ASTLQKESAEVRAEHIARAGGRLAATAAALHPAAEELTARTGEAPWARRILDELEQPLQR 505

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           V+  M   GI ID+  L  +  E    +   +     + GE+ NL+SPKQL  +LF  L 
Sbjct: 506 VLETMHERGIAIDEQALAALREEFEGFVAQAKREAGAIVGEEVNLASPKQLQVVLFETLA 565

Query: 639 FPSGAKTKTGQWKTTA-----QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            P+  K  +G           Q+        +  +  +L +R++SK+         + + 
Sbjct: 566 LPTTRKISSGHSTDAESLTDLQESLDPESSGHQFLSWLLRFREMSKLTGYLVG--LDKVV 623

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQ 752
               RVHT +   +  TGRLAS EPNLQNIP++T  GQ+IR AF++    + L++ADYSQ
Sbjct: 624 DAGSRVHTTFQQTAAATGRLASTEPNLQNIPVRTAEGQRIRDAFVAGEGFETLLTADYSQ 683

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IE+RI+AH+++   L + F +  D+H  VA+ +FGV+ + V P MR   K +++ + YG+
Sbjct: 684 IEMRIMAHLSEDAGLIEAFNSGEDLHNFVASRVFGVSPDAVDPAMRSKTKAVSYGLAYGL 743

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QLRI R+EA      YF RF G+ +Y+  T    R  GY ETI GRR +  ++
Sbjct: 744 SAFGLSRQLRISRAEATALRDGYFERFGGVRDYLHHTVETARTTGYTETILGRRRYLPDL 803

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S     R   ER A+N+PIQGSAADI + AM+ V   +   +L+++MLLQ+HDELV EV
Sbjct: 804 TSDNRQRRENAERVALNSPIQGSAADIIKLAMLRVESRMRAAELSSRMLLQVHDELVVEV 863

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              E+    +I+   M  A      L VPL V + +   W+E 
Sbjct: 864 AAGELDQVREIVEEGMGSA----YQLSVPLDVGVGIGRTWREA 902



 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 146/291 (50%), Gaps = 10/291 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  + L+DG +  +RAF+A P        G   NA+ GF  ML  ++ + R     +H
Sbjct: 6   TDDQRILLIDGHAMAFRAFFALPADGFSDGRGQATNAVYGFTRMLINVVASER----PTH 61

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD P  TFR+ IY  YK  R + P     Q+ L+     A G+  +  + +EADDI
Sbjct: 62  VAVAFDLPGGTFRDRIYDQYKGGRDETPPAFHGQIDLIMQVLDALGVRWLTYEDYEADDI 121

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           IAT    AE  G    I+S+D+D +QLV     L   +K      ++    V +K+GIPP
Sbjct: 122 IATLATRAEAAGDEALIVSSDRDAIQLVGAKVTLLQPIKGVTEMRRMTPAAVEEKYGIPP 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+   L AL G++ DN+PG+PG+G KTAA  L +YG+L  ++ +A  IK  K  +++ ++
Sbjct: 182 ERYPDLAALVGEAADNLPGVPGVGPKTAAKWLTQYGDLPGLIAHAGEIKG-KAGQSLRDH 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            E    +R +    T + +     H  L   +  R++     L F   I R
Sbjct: 241 LEDVERNRLMNAAYTTLDLPEDPAHYSLGGGDRARVLEVFDDLAFGDTIRR 291


>gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 537

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/482 (32%), Positives = 264/482 (54%), Gaps = 19/482 (3%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
            +      +Y  +   ++++ + +     G  +  ++  + +   +    +A++      
Sbjct: 37  PEPTARAATYRVLTTREELEAFARSARAAGRLALDVLATSREPMSAHVCGVALACEPG-- 94

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                 + +++ L                +I + +     +    K+GH++K+ +++L R
Sbjct: 95  ------QAVYVPLGHRYL--GAPAQLSMSDIDAVMGPLLADPELPKVGHDVKFCEVILLR 146

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKS--RKSSIPIDK 532
           + I + G   D ML SY+LD     + +  +A++ L     T  E+      ++   +D+
Sbjct: 147 HRIGLVGVSFDTMLASYLLDP-EGKNQLHELAERELGAKMQTLDEVAPKRRGQAQRALDE 205

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I   +   +    ++V L L   LRP+L VEKL  +  +++ P+  V+++ME+TG+ +D 
Sbjct: 206 IELGEASSYGAAFADVALSLTDRLRPRLRVEKLEDLLVQIELPLSAVLAEMELTGVLVDP 265

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L Q+ A+++  L +LE+   ++ G   NL+SPKQL  +LF +LK  S  KTKTG+  +
Sbjct: 266 QALAQLGAQMTTELAALEQKAREIVGHDINLASPKQLEAVLFDELKLRSQRKTKTGR--S 323

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T  D+ +    ++P    +LE R ++K+K TY D+LP  +N  T R+HT +  A   TGR
Sbjct: 324 TDADVLEALSEEHPFPGVVLEHRAIAKLKGTYVDALPRLVNPGTGRIHTRWGQAVAATGR 383

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+T+LG+ IRRAF++PP   ++SADYSQIELR+LAH++K   L   F 
Sbjct: 384 LSSQDPNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFR 443

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+H   A EIFGV+   V+ +MRR +KTINF +IYG+    LA +L I R+EAA +I
Sbjct: 444 AGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESALAKRLDISRAEAARFI 503

Query: 833 KR 834
             
Sbjct: 504 DA 505


>gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
 gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
          Length = 811

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 193/598 (32%), Positives = 308/598 (51%), Gaps = 25/598 (4%)

Query: 315 AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
           A++    ++  I   + + LS   + IN   +P  + LE +       I   S  +  + 
Sbjct: 228 AMKQSKMKENLINDKEQAFLSKTLATINI-ASPITIGLEDILYSGPQDIKALS--QFYDE 284

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVETIFIDL 431
            D +Q+   L    S       D  +    K    +       +   D     + I I  
Sbjct: 285 MDFKQFKAALGEETS-QEDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAW 343

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIM 490
               +  +T   +L +E L   KK           ++ K  K++L+R+ I +     D  
Sbjct: 344 GNSDTIYATSNVSLLQEAL--FKKALSKP---IKTYDFKRSKVLLNRFNIDLPEPAFDTR 398

Query: 491 LMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           L  Y+L S    + +++IA+ +    L        K  K +IP      ++  EH  +  
Sbjct: 399 LAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRFLEHLAKKV 453

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            V++     +  +L   +   +   +++P+ +V+++MEI GI++ ++ L +++ E  K +
Sbjct: 454 KVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVI 513

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
            +L + IY+L+G++FN++SPKQLG +LF  L  P     KT    +TA D+ +     +P
Sbjct: 514 ETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISP 573

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           ++  ILE+RQ++K++STY   L ++I +  + +HT Y    T TGRL+S +PNLQNIP++
Sbjct: 574 LVTKILEYRQITKLQSTYIIGLQDYILEDGK-IHTRYVQDLTQTGRLSSSDPNLQNIPVR 632

Query: 727 TDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
            + G+ IR+AF+       L+S+DYSQIELR+LAHI+K   L   F+   DIH   A  +
Sbjct: 633 LEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRV 692

Query: 786 FGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           FG+   E V+P  RR+AK +NF I+YGIS F L+  L IPR  A  YI  YF R+PGI  
Sbjct: 693 FGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
           Y+E      +  GYVET+F RR    +INS   +IR   ER AIN+PIQGSAADI + 
Sbjct: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKM 810



 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 114/320 (35%), Positives = 162/320 (50%), Gaps = 14/320 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +N L L+DGSS  +RAF+A        + + GL  NAI GF  ML  +L   +    
Sbjct: 1   MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E++ +EA
Sbjct: 57  PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEA 116

Query: 118 DDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171
           DDII T    AE   E F +T++S DKDL+QL    T +  + K     E+    ++++K
Sbjct: 117 DDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEK 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P + + L+AL GD  DNIPG+  IG KT   LL EYG+LE I  N   +KQ K +E
Sbjct: 177 MGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKE 236

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINRVAT 290
           N++   E A LS+ L  +    PITI LE ++     +   L  F   ++F +    +  
Sbjct: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE 296

Query: 291 TYDCDAANIEPVVLDINTTE 310
               +   ++   ++   TE
Sbjct: 297 ETSQEDFEVDFTEVEQLKTE 316


>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
 gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
          Length = 829

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/510 (34%), Positives = 268/510 (52%), Gaps = 38/510 (7%)

Query: 465 IGHNIKYDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
              N+K    + H  G  ++     DI L  Y+L+     +    +    L         
Sbjct: 355 YVFNLKE---LYHTVGAELKKLKTFDISLGYYLLNPLLKDYSPEQVIGNLLG-------- 403

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                    K+       H I+    + +           E L  +Y  ++ P+  V+ +
Sbjct: 404 --------AKVELPVHLHHGIKAGKEVEKKLKE-------EGLYRLYAEVEHPLSYVLYK 448

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G+   +  L ++  E+ + +  +E  I++L+GEKFNL+SPKQL  +LF KL     
Sbjct: 449 MEKRGVPFSEKALMELERELEEKISEVETKIFELAGEKFNLNSPKQLSKVLFEKLGLKPV 508

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT++G + T  + L  +    + I  +IL++R+LSK+ S++  +L   I++ T RVH  
Sbjct: 509 KKTRSG-YSTDVETLTTLALEGHEIAVHILDYRKLSKLLSSFVKALLKRIDE-TGRVHGN 566

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
           +    T TGRL+S EPNLQN+P+   L  ++RRA  +P    L+ ADYSQ+ELRILAH++
Sbjct: 567 FIQTGTATGRLSSAEPNLQNLPVSDPLSLRVRRAVRAPEGYTLVWADYSQVELRILAHLS 626

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
           +   L + F    DIH   A  +F     +++ + RR AKT+NF IIYG+SP  LA +L 
Sbjct: 627 QDRNLIEAFLKGEDIHTETAKHLFHT--RQITDRERRVAKTVNFGIIYGMSPHGLAERLS 684

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           IP  EA DYI+RYF +FP + E+IE+T     + G+VET FGRR    E+       R+ 
Sbjct: 685 IPLQEAKDYIERYFQKFPKVREFIEETVREAYKKGFVETAFGRRRPLPELKEKSFHKRSF 744

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
            ERAA+N  IQG+AADI + AM+++    E  KL + ++LQ+HDELV E PE      + 
Sbjct: 745 GERAAVNTVIQGTAADIMKMAMVNLQP--EAEKLNSYIILQVHDELVLEAPEGAEEEVAA 802

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            +   ME A     NL VPL V +K    W
Sbjct: 803 KVKQVMEGAA----NLSVPLTVEVKSGKEW 828



 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 109/292 (37%), Positives = 166/292 (56%), Gaps = 10/292 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + +FL DG+   Y+A++A   LS   DG P NA+ GF  +  K+L+  +      + AV 
Sbjct: 2   DRVFLFDGTGLAYKAYHAIKGLSTT-DGFPTNAVYGFARLFLKMLRELKPR----YCAVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+EI  DYKANR   P+    QLP ++   +  G+  +E+ G+EADDII T 
Sbjct: 57  FDAGRKTFRSEISKDYKANRKPTPDDFKVQLPYIKEFLKCLGVKVLELPGYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
               +++GF V I+++DKD+ QL+SP   +    K     + ID     ++ GI PE + 
Sbjct: 117 VKRLQEKGFEVVIVTSDKDMKQLLSPRVSILVPPKGKEKAKWIDYSSFKEETGIEPETVP 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L+GD  DNIPG+PGIG KTA  LL+E+ NLE I  N  R+  K +RE + ++ E+A
Sbjct: 177 DLFGLSGDRTDNIPGVPGIGEKTALKLLREFKNLEGIYENLDRL-PKGQREKLEKHRESA 235

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             SR+L  + T+ P+ + LE L+L++ NG  L   ++ L+   L   +   +
Sbjct: 236 FKSRELARIETNAPVDVALEELLLKEPNGECLGKLIEKLQMRSLYGEIEKLF 287


>gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
 gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
          Length = 861

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 202/653 (30%), Positives = 322/653 (49%), Gaps = 31/653 (4%)

Query: 326 IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
           I +   + +S + + +  E        +   K   +   ++ Y K    K+ ++ V+   
Sbjct: 232 IASKDLAYISRELATVFDELDIDLNIEDAKIKEKDFDKLSEIYLKYELRKEYEKLVKDKP 291

Query: 386 TIGSASFKIITDTMDAFHSKP----IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
            +     +I   +++ F +K       I+I   ++      K E  +         +   
Sbjct: 292 KMDLKINEIEYPSLNDFITKINSVNEEISIYLGEEGIAFCNKDEVHYTFDISEEIGNLFE 351

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS 501
           K    ++I S L     +    K               GI+ + + DI+L S+ L + +S
Sbjct: 352 KGVSIRDIDSNLNVCIYSGKEWK-------------NLGINFKNYFDILLASFTLGTDKS 398

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
              + ++A   L  + +EI K   +            +   I  +  I +L  +    L 
Sbjct: 399 QK-LETMAFDKLGLSIEEIDKKILNKFDATSF-IEYRKNRLITMTYAIFKLKEVFMDLLE 456

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
            E  L +Y   +K   DV+  ME  GI I+Q+  ++ + E+ K +  +E  IY  SGE F
Sbjct: 457 KENQLDIYLE-EKEFTDVLIYMEKQGIAINQNYFEKYNLELEKKIKDIENKIYIESGESF 515

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           N+SSPKQLG++LF  +      K K G + T A+ LE +      I + +LE+R+L K+K
Sbjct: 516 NISSPKQLGEVLFETMGIEGVKKNKRG-YSTDAEVLELLRDRGIKIAELLLEYRELVKLK 574

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           STY + L         R+HT Y+   T TGRL+S  PNLQNIP +T  G KIR  FI+  
Sbjct: 575 STYVEPLLKL--SINGRIHTTYNQTGTATGRLSSSNPNLQNIPTRTYEGTKIREGFIASK 632

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRH 800
             KL+S DYSQIELR+LA I+K   L   ++++LD+H + A +IF + + EKVS   R  
Sbjct: 633 GMKLVSFDYSQIELRVLAEISKDENLINAYKHNLDLHELTARKIFMLKDDEKVSKTQRNI 692

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK INFS++YG +PF L+ +L+I  S+A  YI  YF  +P +   ++      +++GYVE
Sbjct: 693 AKVINFSVLYGKTPFGLSKELKITVSDAKLYINTYFKEYPKVRILLDDIIEKAKKDGYVE 752

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T FG R +  +INS   +I+   +R A+N  IQG+AA+I ++ M  ++  L +     KM
Sbjct: 753 TKFGTRRYVYDINSSNINIKEQAKRMAVNTVIQGTAANIIKKVMKEIYDKLCNDN--VKM 810

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           LLQ+HDEL+FEV E+      + I   M+   +      V LKVN    +NW 
Sbjct: 811 LLQVHDELIFEVREDI--NIFEEIRDIMQNTIVFD---DVVLKVNGSEGDNWA 858



 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 217/497 (43%), Gaps = 30/497 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++D S+ +YRA++A  +  R  +G PV A+ GF   L   L     E + +   V 
Sbjct: 2   KKILILDTSAIMYRAYFAL-MNFRNSNGEPVGAMLGFIKQLELALSYFSPEYVIAAKDV- 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
               A   R EIY +YK NR  +P+ L+ QL  +    + +GIP I+I  +EADD+IA+ 
Sbjct: 60  --KRAELKRREIYKEYKENRSGMPDELVMQLDAIDGILEGYGIPIIKIPSYEADDVIASI 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------EHVIKKWGIPPE 177
           +    K+ + + I++ DKDL QL++P T +    K+++ +        E VI+  G+   
Sbjct: 118 SKKYSKD-YEIIILTGDKDLAQLINPNTSIALLGKKDENEPYKIIENDEDVIEYLGVKSY 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++  L  L GDS D IPG+ GIG KT A L+ EY N++NI  N   IK    ++ I+   
Sbjct: 177 QIKDLFGLIGDSSDGIPGVLGIGPKTGAKLIAEYDNIDNIYANIDNIKGA-LQKKIIASK 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT-TYDCDA 296
           + A +SR+L  +  ++ I + +E   +++ +  +L       E  K   ++       D 
Sbjct: 236 DLAYISRELATVFDELDIDLNIEDAKIKEKDFDKLSEIYLKYELRKEYEKLVKDKPKMDL 295

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
              E     +N    K  ++  EI      +   F +  +     +  +    LF    +
Sbjct: 296 KINEIEYPSLNDFITKINSVNEEISIYLGEEGIAFCNKDEVHYTFDISEEIGNLFE---K 352

Query: 357 KLSQYPINNDSYTKIVNTKDIQQW---VQKLETIGSASFKIITD---TMDAFHSKPIAIA 410
            +S   I+++    I + K+ +      +    I  ASF + TD    ++      + ++
Sbjct: 353 GVSIRDIDSNLNVCIYSGKEWKNLGINFKNYFDILLASFTLGTDKSQKLETMAFDKLGLS 412

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I  +D+K    F   +       +             ++        E E+ L I    K
Sbjct: 413 IEEIDKKILNKFDATS----FIEYRKNRLITMTYAIFKLKEVFMDLLEKENQLDIYLEEK 468

Query: 471 YDKLVL---HRYGISMR 484
               VL    + GI++ 
Sbjct: 469 EFTDVLIYMEKQGIAIN 485


>gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612]
          Length = 421

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/424 (39%), Positives = 254/424 (59%), Gaps = 24/424 (5%)

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           YE ++ P+  V+SQME+ GI ID   L ++S E+   L  +E  +Y+LS E FNLSSPKQ
Sbjct: 2   YEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELSEENFNLSSPKQ 61

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LG+ILF KL        KT    +T   + +    ++ II+++++ R L+K+ STY D+L
Sbjct: 62  LGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLTKLLSTYIDAL 121

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           PN IN++T RVHT ++ A+T TGRL+S  PNLQNIP++T+  ++IR+AF+     KL+SA
Sbjct: 122 PNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSA 181

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQIELRILAH+A    L   F  + DIH + A  IF    E +S   RR  KTINF +
Sbjct: 182 DYSQIELRILAHLADEEILINAFHKNDDIHSLTAKLIF--EKEVISSDERRVGKTINFGV 239

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG+   + A    +   EA +++ +Y  R+  I +++E  +      GYV+TIFGR+  
Sbjct: 240 IYGMGIKKFARSTGVSIPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKRE 299

Query: 869 Y------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           +                  D  ++ ++ +   + RAA NAPIQGS+ADI + AM+ ++K 
Sbjct: 300 FKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKK 359

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
             +  +  KMLLQ+HDEL+FEV  + +   ++++  +ME      + L VPL V+I + +
Sbjct: 360 FIEMNVPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMEDC----VKLNVPLLVDIGIGD 415

Query: 971 NWQE 974
           NW E
Sbjct: 416 NWME 419


>gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672]
          Length = 791

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 187/502 (37%), Positives = 287/502 (57%), Gaps = 30/502 (5%)

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIAS---IAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           GI +R   D       L +   +H I +   +  + +S+       + K +   DK +  
Sbjct: 311 GIKLRYVFD-------LKNIIKNHKIDTDQLVDFEIISWLTDPDTGTIKFT---DKDTLE 360

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
              E        ILQ    +  ++    L  +Y +++  +I ++S+ME TGI ++   LK
Sbjct: 361 SFFEK-------ILQKKEFILDRMDKYNLWELYNKVEHKIIHILSEMEQTGILLNSKQLK 413

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           +   +I + L + ++ I ++ GE+ NL+SPKQL  +LF KLK     K KTG   +T +D
Sbjct: 414 ETDEKIKELLNNEKKAIDEMLGEEINLNSPKQLSFVLFEKLKMVPFKKNKTGY--STDED 471

Query: 657 LEQINCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             +     NP    ++K+IL++R+ SK+ STY   L ++I++ T R+HT +    T TGR
Sbjct: 472 SLRNMIFLNPSYENLLKSILKYREFSKLISTYTSKLSDYIDRSTGRIHTQFKQTGTATGR 531

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S+ PNLQNIP K +LG +IR AF+S      +S DYSQIELRILAHI+    L   FE
Sbjct: 532 LSSVNPNLQNIPQKGELGSEIRSAFVSKEGYSFLSIDYSQIELRILAHISDDENLKIAFE 591

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              DIH M A ++FG+   +++  +RR AK +NF IIYG+SP+ L+  + IP+SEA  +I
Sbjct: 592 QDFDIHTMTAMKVFGLLESEITRDIRRIAKAVNFGIIYGLSPYGLSRDVGIPQSEAKIFI 651

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           K+YF  +P + +Y+++       +GYV TI  R     +I S  ++I+   ER AIN+PI
Sbjct: 652 KKYFETYPNVKKYMKEIVKKAENDGYVTTILNRPRFIPDIKSANNTIKQRAERIAINSPI 711

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSAADI + AMI   K L+  ++  K++LQ+HDELVFE+ ++ I   S+ I   ME   
Sbjct: 712 QGSAADIIKLAMIKSDKYLKRMQIDGKLILQVHDELVFEINDKYIDKTSKDIKVIMEN-- 769

Query: 953 LPKINLRVPLKVNIKVSNNWQE 974
                L+VPLKVN+ +S N  +
Sbjct: 770 --IYPLKVPLKVNLGISKNLGD 789



 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 95/243 (39%), Positives = 135/243 (55%), Gaps = 9/243 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            ++DG S  Y+ FY TP L      +P + I  F N L  +              V+FD 
Sbjct: 3   VIIDGHSLAYKIFYKTPPLYNSKK-VPTSMIHSFLNTLLSIKDKLNPNR----MIVVFDS 57

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              TFR+E++ +YKANR K PE L+ Q+  ++       I     +GFEADD+I T + I
Sbjct: 58  KGDTFRHELFIEYKANRLKAPEDLIVQVEYLKKIIPLLDIELYAKEGFEADDLIYTLSKI 117

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
                  V I++ DKDL Q+V     ++D   +E +D + + +K+GI PE++V   ALTG
Sbjct: 118 ---TDDQVMIVTKDKDLAQIVDERVKIFDYQTDETVDRKKIHEKFGIYPEQIVDFLALTG 174

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           DS DN+PG+ GIG KTA LLL E+G L+NI  N  +IK    RE + +  E A LS+KLV
Sbjct: 175 DSSDNVPGVKGIGEKTAVLLLNEFGTLDNIYSNLDKIKPS-YREKLEKGREIAYLSKKLV 233

Query: 248 MLR 250
            L+
Sbjct: 234 TLK 236


>gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 751

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 163/690 (23%), Positives = 318/690 (46%), Gaps = 88/690 (12%)

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINND-SYTKIVNTKDIQQWVQKLETIGSASFKIIT 396
           T K+ SE+  +    E+ +K+++   +   +Y  I      +  +  L    + +F   T
Sbjct: 86  TGKLVSEKFRELELAEKNEKIAKLLKSKPDNYRLIQTEDQFKALLADLRHEPAFAFDTET 145

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
             +D +    + ++++              ++I ++ + +    G       +L+ LK++
Sbjct: 146 TGVDVYQDVIVGVSLTL-------PRAGYHVYIPVAHNNA----GPQLRRSYVLNGLKRY 194

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW--- 512
             +    K+ HN K+D  +L R+G+ MRG   D M+   +L+    S  + ++A ++   
Sbjct: 195 LTDPTVGKVLHNAKFDIHMLLRHGMRMRGLAHDTMIAMKILNENEPSVALKNLATRYGKF 254

Query: 513 -----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLL 566
                 S+T +++            +       +A +++++  +L+      L   E LL
Sbjct: 255 FGFDGESHTFEDLFGKA----CFADVPLDMALIYAAKDTHLTWELYKWQMEHLTKREDLL 310

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            +Y  L+ P++D+  +ME TG  +D    ++   E+   L  +E+ +    GE  N +SP
Sbjct: 311 KLYRELENPLVDICVEMEQTGFAVDTAFAQEYGEELKGELAEVEKTLVAHFGE-INFNSP 369

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
            QL ++L+ +L  P       G+ ++T     +   G +P I+ +L++R+L+K+  TY +
Sbjct: 370 AQLAEVLYDRLGLPQ------GKERSTDVKTLKGLKGRHPGIEPLLKYRELTKLLGTYVE 423

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
           +LP+ +     R+H  ++  +T+TGR AS EPNLQN+P +       RR  ++P    L+
Sbjct: 424 ALPHQLKADG-RIHGSFNQVATVTGRFASREPNLQNLPPRA------RRLIVAPKGWLLL 476

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--PQMRRHAKTI 804
             D+SQIE RILAH++      + +    D++  +AA +F V + +     + R+  K  
Sbjct: 477 GIDFSQIEPRILAHMSGDPHFREPYLKGEDLYSTLAARVFKVPLSECGDGSKYRKMMKIG 536

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
             +++YG S F L+ QL I   EA  +I+ ++  +P ++ +I+ T  FV++N YV T++G
Sbjct: 537 LLAVMYGTSMFTLSEQLGISVEEAHRFIEGFYDEYPDVYAFIKDTWEFVKKNEYVATLYG 596

Query: 865 RRIHYDEINS-------------------------------PKSSIRNIN---------E 884
           R+  +                                    PK   R             
Sbjct: 597 RKRRFPGHREQAIVYDQLAAKICKALGTERVPLDFWSNKGIPKDLKRKFGAVKGEVERVR 656

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A+NA IQG+AADI +RA++++++         K+   +HDE +  V +       + +
Sbjct: 657 RMAVNARIQGTAADIMKRALLNLYEYTRARG--WKINGTVHDEALLLVRDTITLAEVEEL 714

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              M +A      L VP+KV+ ++   W +
Sbjct: 715 EACMVRAA----ELEVPVKVDTEIMARWGD 740


>gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium]
          Length = 803

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 162/425 (38%), Positives = 248/425 (58%), Gaps = 7/425 (1%)

Query: 555 LLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
            L  +++    L  VY ++++P+++V+  +  TGI +D   L  +S  +   L +LE  I
Sbjct: 375 KLEERVMSNLGLASVYVKIEQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKI 434

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
           Y  +G +FN++SPKQ+G++LF ++   P   K   G  ++T +   +    D+PII  IL
Sbjct: 435 YTHAGREFNINSPKQMGEVLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEIL 494

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
            +R+L K+ STY D+LP  ++    R+ T +      TGR+AS  PNLQNIPI+T+  + 
Sbjct: 495 RYRELQKLVSTYIDNLPPLVSADG-RLRTTFVQTGAATGRMASQNPNLQNIPIRTEESKA 553

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR+AF++ P   ++S DYSQIELRI A +++   + ++F    D+H  VA  +FGV  E+
Sbjct: 554 IRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVAVRVFGVTPEE 613

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQL--RIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           V+ +MRR AK INF I+YG+    L   L     R EA ++   YF+ F  + EY+E+TK
Sbjct: 614 VTREMRRKAKVINFGILYGMGVNALRGNLGEGTSREEAQEFFNAYFNTFTRLAEYLEETK 673

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
            F R+NGY ET+FGRR H+  + S    IR   ER AINAP+QG+AAD  R AM  V++ 
Sbjct: 674 AFARKNGYTETLFGRRRHFPGMQSTAPFIRAQAERMAINAPVQGTAADAMRVAMNLVYQY 733

Query: 911 LEDHK--LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
           ++  K      +LLQ+HDEL+FE+    + T    +V  M+          VP+K ++ V
Sbjct: 734 IQTEKKTDDVHILLQVHDELLFEIKNNVLETEIPKLVELMQGVLEGYDTSGVPIKADVAV 793

Query: 969 SNNWQ 973
             NW 
Sbjct: 794 GPNWG 798



 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 181/427 (42%), Gaps = 29/427 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             +  L L+D  + ++RA++A P  +    G P  A+ G   ML K++++ + +    + 
Sbjct: 14  SDKKTLVLLDSHAILHRAYHALPDFA-SPSGEPTGALYGVVAMLLKIIEDFKPD----YI 68

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A  FD P  T+R+E +  YK  R K  + L+ Q+   R    AFGIP  E  GFEADD++
Sbjct: 69  AACFDLPEPTYRHEAFAAYKGTRSKTDDALVQQIIRSRDIFAAFGIPIYEHPGFEADDML 128

Query: 122 ATYTYIAEKE-GFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIP 175
            T  Y    +    V I S D D MQ V        T+K+        D E V +++G  
Sbjct: 129 GTIAYQTRDDKDLTVIIASGDMDTMQCVEKKRVQVYTLKKGIKDTILYDEEAVKERFGFG 188

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--------K 227
           P+ +   + L GD+ DNIPGI GIG KTA  L+ ++G++++I     + +          
Sbjct: 189 PKLVPDYKGLRGDTSDNIPGIVGIGEKTATDLITQFGSIDDIYKKLKKDEAPFLAAGIKP 248

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED-CNGPRLISFLKALEFTKLIN 286
           +    +    E A+ S+ L  +RTD PIT        ++  +   +++    L F  L  
Sbjct: 249 RIIGLLKAGEEEAQFSKMLATIRTDAPITFVPHATHWQERADTDVILNLFSELGFRTLGA 308

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           ++ T +   A           T  +   A       ++    + ++ + D          
Sbjct: 309 KIKTLFALAADVPANPAESGVTPADIQKAAVLLWLLESERTNASYADIIDYGRSYFETAN 368

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD----AF 402
             ++  +  +++         Y KI      Q  ++ L+ I +    + T  +       
Sbjct: 369 FHEISTKLEERVMSNLGLASVYVKIE-----QPLMEVLQHINATGITLDTAYLAGLSVTM 423

Query: 403 HSKPIAI 409
           H++  A+
Sbjct: 424 HTELTAL 430


>gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1]
 gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1]
          Length = 895

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/541 (32%), Positives = 279/541 (51%), Gaps = 26/541 (4%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG---FEDIMLMSYVLDSGRSS--HDIA 506
            L++FF N++F K  ++IK    +L    I         D M+ SYVL+   +S   ++A
Sbjct: 361 ELEQFFLNDNFKKNTYDIKKTVTLLRNNNIKFSFSSFTYDAMIASYVLNPNVTSRIQNLA 420

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +I +  L     E+    K      +I  +   +  +    ++      +   L      
Sbjct: 421 NIVETELFVEEDELFY-GKGVKQNKEIDTASKAKFIVGKLELLYSTHKPIINLLKENNQF 479

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY----DLSGEKFN 622
           ++YE+++ P+++V+  ME  GI ID+  L + +A     +  LEE +     D   E FN
Sbjct: 480 NLYEKIELPLVEVLFNMEQKGILIDKVELDKQTARTLFLIEELEEKMKVILKDQISENFN 539

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
             SPKQ+ ++LF ++  PS  K      ++T ++  +     +P+I  +LE R+L+K+ S
Sbjct: 540 FGSPKQIKELLFDQIGLPSNKK------QSTDKEALEKIIHLHPVINLLLEHRKLNKLYS 593

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           TY       I    + VHT ++   T TGRL+S EPN+QNI +K +L ++ R+ FIS   
Sbjct: 594 TYLRGFEKFIFDDNK-VHTIFNQTLTNTGRLSSSEPNIQNISVKDELQREARKIFISNND 652

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHA 801
            K  S DYSQIELR+LA + +   L  +F+N  D+H   A +IF +   E+++   RR A
Sbjct: 653 TKFFSFDYSQIELRVLAQLGQEDTLLNIFKNDRDVHAEAARKIFKLEENEEITSDQRRIA 712

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K  NF IIYG+S F L+  L+I   EA  +I  Y+  FP +  Y     N    NGY ET
Sbjct: 713 KVFNFGIIYGLSDFGLSNDLKISIPEAKRFIDDYYLSFPKLMTYKNSLINQATVNGYAET 772

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
              RR   +E+ S    ++N   R A+N PIQG+AADI + AM ++HK   ++ L + M 
Sbjct: 773 YANRRRIVNELASSNFMVKNFGNRIAVNMPIQGTAADILKVAMNNIHKEFRENNLKSFMT 832

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACL--------PKINLRVPLKVNIKVSNNWQ 973
            QIHDE++FE+ E E + A +I+   M+ A +         +  + V L+VN    NNW 
Sbjct: 833 AQIHDEIIFEIFESEESLAVKIVEECMQNAFIDLSKIVQKEEQPIEVKLEVNKSKGNNWF 892

Query: 974 E 974
           E
Sbjct: 893 E 893



 Score =  273 bits (699), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 104/341 (30%), Positives = 168/341 (49%), Gaps = 25/341 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG+S ++RA+YA+     + +   G+P NAI  F NML  L+ +     +    
Sbjct: 2   KKILLVDGNSLLFRAYYASAYAGPVLKTTTGIPTNAIFSFANMLTSLISDRNYYDVK--- 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    TFR++   +YKA R   PE L+PQ  +VR    +  I   E + +EADD+I
Sbjct: 59  -VAFDKSKKTFRHDKLENYKAGRSATPEDLIPQFQIVREFLDSSNISWWEKENYEADDLI 117

Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            T + I E     F V I+++DKD+ QL+S  T +          E      +++KW + 
Sbjct: 118 GTMSKIIENNFSEFEVEILTSDKDMFQLISDKTKILLPKTGTSNLELFGEAELLEKWEVA 177

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+ +V L+ L GD  DN+ G+ G+G KTA  LL+E+  +E I  N   I   K +E ++ 
Sbjct: 178 PKNVVDLKGLMGDPSDNLKGVEGVGEKTAIKLLKEFQTIEGIYENIDSISG-KLQEKLIN 236

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLINRVATTYD 293
             ++A L +++  +  +V I    E+L+ E    N   LI+FL+  E   L+ R++T   
Sbjct: 237 GKDSAILCKEIATINCEVEI----ENLVFEPINLNLNGLINFLEKYEMNSLVKRLSTRVG 292

Query: 294 -----CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
                 +  N E +  +     N   + ET      +I  +
Sbjct: 293 NINGKDEQINKEEIKFNQLKKWNNEFSCETNFLYIESIDEN 333


>gi|148665537|gb|EDK97953.1| polymerase (DNA directed), theta, isoform CRA_c [Mus musculus]
          Length = 2273

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 300/717 (41%), Gaps = 131/717 (18%)

Query: 383  KLETIGSASFKIITDTMDAFH----SKPIAIAISTLDQKDDT-SFKVETIFIDLSVHTSQ 437
            KL+ +       + D          +  + +A+    +     S + E    ++S   + 
Sbjct: 1557 KLKQVSLPQEATVEDAGFPVRGCDGAVVVGLAVCWGAKDAYYLSLQKEQKQSEISPSLAP 1616

Query: 438  DSTGKNTLTKEILSYLKKFFE---NEHFLKIGHN-IKYDKLVLHRYGISMRG-FEDIMLM 492
                     KE +  L+   +   +     + ++ I+  K++L   GIS+   +ED  + 
Sbjct: 1617 PPLDATLTVKERMECLQSCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVA 1676

Query: 493  SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSN 547
             ++LD       + SI   +L +    +L+  ++   I  +  +   EH     A   S 
Sbjct: 1677 CWLLDPDSKEPTLHSIVTSFLPHELA-LLEGMETGPGIQSLGLNVNTEHSGRYRASVESV 1735

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +I      L   L  E L  ++ +++ P    ++ +E+ GI       +     +   L 
Sbjct: 1736 LIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLD 1795

Query: 608  SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT-------------------- 647
            ++E   Y L+G  F+ +S   +  +LF +LK P   + KT                    
Sbjct: 1796 AIETQAYQLAGHSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRM 1855

Query: 648  --GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP--NHINK--RTQRVHT 701
              G+  +T++D+     G +P+   ILEWR++S   +     L    H+N   R +R++ 
Sbjct: 1856 RLGRQFSTSKDILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYP 1915

Query: 702  FYSLASTMTGRLASLEPNLQNIPIKTDLGQK----------------------------- 732
              S + T TGR+   EPN+QN+P   ++                                
Sbjct: 1916 V-SQSHTATGRITFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGL 1974

Query: 733  ----------------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
                                  +R AF+  P   +++ADYSQ+ELRILAH+++   L QV
Sbjct: 1975 HPGHRTQMEEKASDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQV 2034

Query: 771  FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                 D+ R +AAE   +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA 
Sbjct: 2035 LNTGADVFRSIAAEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAAS 2094

Query: 831  YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            YI  +  R+ GI+ ++  T    R+NG+VETI GRR +   I       +   ER AIN 
Sbjct: 2095 YIDSFKSRYKGINHFMRDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINT 2154

Query: 891  PIQGSAADITRRAMISVHKSL-------EDHKLATKM----------------------- 920
             +QGSAADI + A +++ K L       + H     M                       
Sbjct: 2155 TVQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRG 2214

Query: 921  ---LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +LQ+HDEL++EV EE++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2215 GFFILQLHDELLYEVAEEDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2267


>gi|148665538|gb|EDK97954.1| polymerase (DNA directed), theta, isoform CRA_d [Mus musculus]
          Length = 2398

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 300/717 (41%), Gaps = 131/717 (18%)

Query: 383  KLETIGSASFKIITDTMDAFH----SKPIAIAISTLDQKDDT-SFKVETIFIDLSVHTSQ 437
            KL+ +       + D          +  + +A+    +     S + E    ++S   + 
Sbjct: 1682 KLKQVSLPQEATVEDAGFPVRGCDGAVVVGLAVCWGAKDAYYLSLQKEQKQSEISPSLAP 1741

Query: 438  DSTGKNTLTKEILSYLKKFFE---NEHFLKIGHN-IKYDKLVLHRYGISMRG-FEDIMLM 492
                     KE +  L+   +   +     + ++ I+  K++L   GIS+   +ED  + 
Sbjct: 1742 PPLDATLTVKERMECLQSCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVA 1801

Query: 493  SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSN 547
             ++LD       + SI   +L +    +L+  ++   I  +  +   EH     A   S 
Sbjct: 1802 CWLLDPDSKEPTLHSIVTSFLPHELA-LLEGMETGPGIQSLGLNVNTEHSGRYRASVESV 1860

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +I      L   L  E L  ++ +++ P    ++ +E+ GI       +     +   L 
Sbjct: 1861 LIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLD 1920

Query: 608  SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT-------------------- 647
            ++E   Y L+G  F+ +S   +  +LF +LK P   + KT                    
Sbjct: 1921 AIETQAYQLAGHSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRM 1980

Query: 648  --GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP--NHINK--RTQRVHT 701
              G+  +T++D+     G +P+   ILEWR++S   +     L    H+N   R +R++ 
Sbjct: 1981 RLGRQFSTSKDILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYP 2040

Query: 702  FYSLASTMTGRLASLEPNLQNIPIKTDLGQK----------------------------- 732
              S + T TGR+   EPN+QN+P   ++                                
Sbjct: 2041 V-SQSHTATGRITFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGL 2099

Query: 733  ----------------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
                                  +R AF+  P   +++ADYSQ+ELRILAH+++   L QV
Sbjct: 2100 HPGHRTQMEEKASDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQV 2159

Query: 771  FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                 D+ R +AAE   +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA 
Sbjct: 2160 LNTGADVFRSIAAEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAAS 2219

Query: 831  YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            YI  +  R+ GI+ ++  T    R+NG+VETI GRR +   I       +   ER AIN 
Sbjct: 2220 YIDSFKSRYKGINHFMRDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINT 2279

Query: 891  PIQGSAADITRRAMISVHKSL-------EDHKLATKM----------------------- 920
             +QGSAADI + A +++ K L       + H     M                       
Sbjct: 2280 TVQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRG 2339

Query: 921  ---LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +LQ+HDEL++EV EE++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2340 GFFILQLHDELLYEVAEEDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2392


>gi|148665536|gb|EDK97952.1| polymerase (DNA directed), theta, isoform CRA_b [Mus musculus]
          Length = 2119

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 300/717 (41%), Gaps = 131/717 (18%)

Query: 383  KLETIGSASFKIITDTMDAFH----SKPIAIAISTLDQKDDT-SFKVETIFIDLSVHTSQ 437
            KL+ +       + D          +  + +A+    +     S + E    ++S   + 
Sbjct: 1403 KLKQVSLPQEATVEDAGFPVRGCDGAVVVGLAVCWGAKDAYYLSLQKEQKQSEISPSLAP 1462

Query: 438  DSTGKNTLTKEILSYLKKFFE---NEHFLKIGHN-IKYDKLVLHRYGISMRG-FEDIMLM 492
                     KE +  L+   +   +     + ++ I+  K++L   GIS+   +ED  + 
Sbjct: 1463 PPLDATLTVKERMECLQSCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVA 1522

Query: 493  SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSN 547
             ++LD       + SI   +L +    +L+  ++   I  +  +   EH     A   S 
Sbjct: 1523 CWLLDPDSKEPTLHSIVTSFLPHELA-LLEGMETGPGIQSLGLNVNTEHSGRYRASVESV 1581

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +I      L   L  E L  ++ +++ P    ++ +E+ GI       +     +   L 
Sbjct: 1582 LIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLD 1641

Query: 608  SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT-------------------- 647
            ++E   Y L+G  F+ +S   +  +LF +LK P   + KT                    
Sbjct: 1642 AIETQAYQLAGHSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRM 1701

Query: 648  --GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP--NHINK--RTQRVHT 701
              G+  +T++D+     G +P+   ILEWR++S   +     L    H+N   R +R++ 
Sbjct: 1702 RLGRQFSTSKDILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYP 1761

Query: 702  FYSLASTMTGRLASLEPNLQNIPIKTDLGQK----------------------------- 732
              S + T TGR+   EPN+QN+P   ++                                
Sbjct: 1762 V-SQSHTATGRITFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGL 1820

Query: 733  ----------------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
                                  +R AF+  P   +++ADYSQ+ELRILAH+++   L QV
Sbjct: 1821 HPGHRTQMEEKASDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQV 1880

Query: 771  FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                 D+ R +AAE   +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA 
Sbjct: 1881 LNTGADVFRSIAAEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAAS 1940

Query: 831  YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            YI  +  R+ GI+ ++  T    R+NG+VETI GRR +   I       +   ER AIN 
Sbjct: 1941 YIDSFKSRYKGINHFMRDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINT 2000

Query: 891  PIQGSAADITRRAMISVHKSL-------EDHKLATKM----------------------- 920
             +QGSAADI + A +++ K L       + H     M                       
Sbjct: 2001 TVQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRG 2060

Query: 921  ---LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +LQ+HDEL++EV EE++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2061 GFFILQLHDELLYEVAEEDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2113


>gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus]
          Length = 2587

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 300/717 (41%), Gaps = 131/717 (18%)

Query: 383  KLETIGSASFKIITDTMDAFH----SKPIAIAISTLDQKDDT-SFKVETIFIDLSVHTSQ 437
            KL+ +       + D          +  + +A+    +     S + E    ++S   + 
Sbjct: 1871 KLKQVSLPQEATVEDAGFPVRGCDGAVVVGLAVCWGAKDAYYLSLQKEQKQSEISPSLAP 1930

Query: 438  DSTGKNTLTKEILSYLKKFFE---NEHFLKIGHN-IKYDKLVLHRYGISMRG-FEDIMLM 492
                     KE +  L+   +   +     + ++ I+  K++L   GIS+   +ED  + 
Sbjct: 1931 PPLDATLTVKERMECLQSCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVA 1990

Query: 493  SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSN 547
             ++LD       + SI   +L +    +L+  ++   I  +  +   EH     A   S 
Sbjct: 1991 CWLLDPDSKEPTLHSIVTSFLPHELA-LLEGMETGPGIQSLGLNVNTEHSGRYRASVESV 2049

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +I      L   L  E L  ++ +++ P    ++ +E+ GI       +     +   L 
Sbjct: 2050 LIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLD 2109

Query: 608  SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT-------------------- 647
            ++E   Y L+G  F+ +S   +  +LF +LK P   + KT                    
Sbjct: 2110 AIETQAYQLAGHSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRM 2169

Query: 648  --GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP--NHINK--RTQRVHT 701
              G+  +T++D+     G +P+   ILEWR++S   +     L    H+N   R +R++ 
Sbjct: 2170 RLGRQFSTSKDILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYP 2229

Query: 702  FYSLASTMTGRLASLEPNLQNIPIKTDLGQK----------------------------- 732
              S + T TGR+   EPN+QN+P   ++                                
Sbjct: 2230 V-SQSHTATGRITFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGL 2288

Query: 733  ----------------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
                                  +R AF+  P   +++ADYSQ+ELRILAH+++   L QV
Sbjct: 2289 HPGHRTQMEEKASDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQV 2348

Query: 771  FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                 D+ R +AAE   +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA 
Sbjct: 2349 LNTGADVFRSIAAEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAAS 2408

Query: 831  YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            YI  +  R+ GI+ ++  T    R+NG+VETI GRR +   I       +   ER AIN 
Sbjct: 2409 YIDSFKSRYKGINHFMRDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINT 2468

Query: 891  PIQGSAADITRRAMISVHKSL-------EDHKLATKM----------------------- 920
             +QGSAADI + A +++ K L       + H     M                       
Sbjct: 2469 TVQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRG 2528

Query: 921  ---LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +LQ+HDEL++EV EE++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2529 GFFILQLHDELLYEVAEEDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2581


>gi|226823286|ref|NP_001152841.1| DNA polymerase theta isoform 2 [Mus musculus]
 gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus musculus]
          Length = 2265

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 300/717 (41%), Gaps = 131/717 (18%)

Query: 383  KLETIGSASFKIITDTMDAFH----SKPIAIAISTLDQKDDT-SFKVETIFIDLSVHTSQ 437
            KL+ +       + D          +  + +A+    +     S + E    ++S   + 
Sbjct: 1549 KLKQVSLPQEATVEDAGFPVRGCDGAVVVGLAVCWGAKDAYYLSLQKEQKQSEISPSLAP 1608

Query: 438  DSTGKNTLTKEILSYLKKFFE---NEHFLKIGHN-IKYDKLVLHRYGISMRG-FEDIMLM 492
                     KE +  L+   +   +     + ++ I+  K++L   GIS+   +ED  + 
Sbjct: 1609 PPLDATLTVKERMECLQSCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVA 1668

Query: 493  SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSN 547
             ++LD       + SI   +L +    +L+  ++   I  +  +   EH     A   S 
Sbjct: 1669 CWLLDPDSKEPTLHSIVTSFLPHELA-LLEGMETGPGIQSLGLNVNTEHSGRYRASVESV 1727

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +I      L   L  E L  ++ +++ P    ++ +E+ GI       +     +   L 
Sbjct: 1728 LIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLD 1787

Query: 608  SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT-------------------- 647
            ++E   Y L+G  F+ +S   +  +LF +LK P   + KT                    
Sbjct: 1788 AIETQAYQLAGHSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRM 1847

Query: 648  --GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP--NHINK--RTQRVHT 701
              G+  +T++D+     G +P+   ILEWR++S   +     L    H+N   R +R++ 
Sbjct: 1848 RLGRQFSTSKDILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYP 1907

Query: 702  FYSLASTMTGRLASLEPNLQNIPIKTDLGQK----------------------------- 732
              S + T TGR+   EPN+QN+P   ++                                
Sbjct: 1908 V-SQSHTATGRITFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGL 1966

Query: 733  ----------------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
                                  +R AF+  P   +++ADYSQ+ELRILAH+++   L QV
Sbjct: 1967 HPGHRTQMEEKASDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQV 2026

Query: 771  FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                 D+ R +AAE   +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA 
Sbjct: 2027 LNTGADVFRSIAAEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAAS 2086

Query: 831  YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            YI  +  R+ GI+ ++  T    R+NG+VETI GRR +   I       +   ER AIN 
Sbjct: 2087 YIDSFKSRYKGINHFMRDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINT 2146

Query: 891  PIQGSAADITRRAMISVHKSL-------EDHKLATKM----------------------- 920
             +QGSAADI + A +++ K L       + H     M                       
Sbjct: 2147 TVQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRG 2206

Query: 921  ---LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +LQ+HDEL++EV EE++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2207 GFFILQLHDELLYEVAEEDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2259


>gi|30387615|ref|NP_084253.1| DNA polymerase theta isoform 1 [Mus musculus]
 gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus]
 gi|148665535|gb|EDK97951.1| polymerase (DNA directed), theta, isoform CRA_a [Mus musculus]
 gi|187953885|gb|AAI38361.1| Polymerase (DNA directed), theta [Mus musculus]
 gi|187956948|gb|AAI57901.1| Polymerase (DNA directed), theta [Mus musculus]
          Length = 2544

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/717 (24%), Positives = 300/717 (41%), Gaps = 131/717 (18%)

Query: 383  KLETIGSASFKIITDTMDAFH----SKPIAIAISTLDQKDDT-SFKVETIFIDLSVHTSQ 437
            KL+ +       + D          +  + +A+    +     S + E    ++S   + 
Sbjct: 1828 KLKQVSLPQEATVEDAGFPVRGCDGAVVVGLAVCWGAKDAYYLSLQKEQKQSEISPSLAP 1887

Query: 438  DSTGKNTLTKEILSYLKKFFE---NEHFLKIGHN-IKYDKLVLHRYGISMRG-FEDIMLM 492
                     KE +  L+   +   +     + ++ I+  K++L   GIS+   +ED  + 
Sbjct: 1888 PPLDATLTVKERMECLQSCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVA 1947

Query: 493  SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSN 547
             ++LD       + SI   +L +    +L+  ++   I  +  +   EH     A   S 
Sbjct: 1948 CWLLDPDSKEPTLHSIVTSFLPHELA-LLEGMETGPGIQSLGLNVNTEHSGRYRASVESV 2006

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +I      L   L  E L  ++ +++ P    ++ +E+ GI       +     +   L 
Sbjct: 2007 LIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLD 2066

Query: 608  SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT-------------------- 647
            ++E   Y L+G  F+ +S   +  +LF +LK P   + KT                    
Sbjct: 2067 AIETQAYQLAGHSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRM 2126

Query: 648  --GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP--NHINK--RTQRVHT 701
              G+  +T++D+     G +P+   ILEWR++S   +     L    H+N   R +R++ 
Sbjct: 2127 RLGRQFSTSKDILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYP 2186

Query: 702  FYSLASTMTGRLASLEPNLQNIPIKTDLGQK----------------------------- 732
              S + T TGR+   EPN+QN+P   ++                                
Sbjct: 2187 V-SQSHTATGRITFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGL 2245

Query: 733  ----------------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
                                  +R AF+  P   +++ADYSQ+ELRILAH+++   L QV
Sbjct: 2246 HPGHRTQMEEKASDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQV 2305

Query: 771  FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                 D+ R +AAE   +  + V   +R+HAK I + IIYG+    L  Q+ I  ++AA 
Sbjct: 2306 LNTGADVFRSIAAEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAAS 2365

Query: 831  YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            YI  +  R+ GI+ ++  T    R+NG+VETI GRR +   I       +   ER AIN 
Sbjct: 2366 YIDSFKSRYKGINHFMRDTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINT 2425

Query: 891  PIQGSAADITRRAMISVHKSL-------EDHKLATKM----------------------- 920
             +QGSAADI + A +++ K L       + H     M                       
Sbjct: 2426 TVQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRG 2485

Query: 921  ---LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               +LQ+HDEL++EV EE++   +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 2486 GFFILQLHDELLYEVAEEDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2538


>gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
 gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
          Length = 798

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 162/422 (38%), Positives = 238/422 (56%), Gaps = 11/422 (2%)

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           + KL    LL VY  ++ P+   + +ME  GI  D+D++ +V+ ++   +  + E I   
Sbjct: 382 KDKLKANGLLEVYLGMELPVAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKIKTF 441

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI----IKNIL 672
            G   NL+SPKQL   LF +L      KTKTG   +T ++  +     NP+    +++IL
Sbjct: 442 VGYDINLNSPKQLQVFLFEELGVEGLKKTKTG--FSTDEESLRAMIPMNPLYAHVLEDIL 499

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
            +R+L+K+ STYA  L +++     R+H+ +    T TGRL+S+ PN+QNIP+K   G K
Sbjct: 500 VYRELAKLLSTYALPLKDYVLADG-RIHSSFRQTGTATGRLSSVNPNMQNIPMKGKWGVK 558

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R AFI       +S DYSQIELRILAH+     L + + N+ DIH   A+ IFGV  EK
Sbjct: 559 LREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNEDIHTKTASGIFGVAPEK 618

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           V   MRR AK +NF I+YG+SPF L+    + + EA  +I++YF  +P +  +IEK    
Sbjct: 619 VDSGMRRLAKAVNFGILYGLSPFGLSRDTGVSQKEAKKFIEKYFATYPKVKGFIEKIAKE 678

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
            ++ GY ET+ GR+    EI S   ++    ER A N P+QGSAADI + AM+     L+
Sbjct: 679 TKEKGYAETLAGRKRFIREIRSKNRTVAMRGERIATNVPMQGSAADIIKLAMVECQAVLD 738

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           D +    ++LQ+HDELVFEV +++I   S  +   ME        L VPL VN     N 
Sbjct: 739 DKEYDALVVLQVHDELVFEVLDKDIDEFSDRVRSIMEGVM----ELDVPLVVNGAAGKNL 794

Query: 973 QE 974
            E
Sbjct: 795 GE 796



 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 158/309 (51%), Gaps = 14/309 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            ++DGS   +R ++ +P L+    G+P + I G    +  L+    +E+     AV+FD 
Sbjct: 3   IVIDGSYIAFRTYHKSPPLTNSA-GVPTSVIHGVMQSIITLINKYGREN----IAVVFDA 57

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R+EI+P+YKA R   PE L  Q  ++       G+   ++ G+E DDI+AT    
Sbjct: 58  KGKNRRHEIHPEYKATRDATPEDLGLQFGIMDELIPLLGVAYYKVDGYEGDDIMATI--- 114

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
           A      V +++ DKD+ Q+V     +YD+ K E    + VI+K+G+PPEK+  L AL G
Sbjct: 115 AAHTKDDVGMLTKDKDIYQIVDDRVKIYDSQKGEFFGRDMVIEKFGVPPEKVRELLALAG 174

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           D+ DNIPG+ G+G KTAA LL E+G+L+ I  N   +K  K ++ +++  ++A LS  LV
Sbjct: 175 DTADNIPGVAGVGVKTAAKLLNEHGSLDGIYENIESVKG-KLKDKLIDNKDSAYLSYDLV 233

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
                + I   +  + +   +  +L   L  LE   + +++    D +    +   ++  
Sbjct: 234 ----GLDILESIPDVEIVK-DDKKLSEKLTELELKTIQSKLFADSDSEDVQPDVKAVEAG 288

Query: 308 TTENKGIAI 316
              +   A+
Sbjct: 289 DVSDVHTAV 297


>gi|157786800|ref|NP_001099348.1| DNA polymerase theta [Rattus norvegicus]
 gi|149060535|gb|EDM11249.1| polymerase (DNA directed), theta (predicted), isoform CRA_a [Rattus
            norvegicus]
          Length = 2547

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 169/690 (24%), Positives = 293/690 (42%), Gaps = 124/690 (17%)

Query: 404  SKPIAIAISTLDQKDDT-SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE---N 459
            +  + +A+    +     S + E    ++S   +          KE + YL+   +   +
Sbjct: 1857 AVVVGLAVCWGGKDAYYLSLQKEQKQSEMSPSLAPPPLDATLTVKERMEYLQSCLQKKSD 1916

Query: 460  EHFLKIGHN-IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
            +    + ++ I+  K++L   GIS+   +ED  +  ++LD       + SI   +L +  
Sbjct: 1917 QERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIVTSFLPHEL 1976

Query: 518  KEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
              +          S+ ++  +D   +  A   S +I      L   L  E L  ++ +++
Sbjct: 1977 ALLEGIETGPGIQSLGLNVNTDHSGRYRASVESVLIFNSMNQLNSMLQKENLHDIFCKVE 2036

Query: 574  KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
             P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   +  +L
Sbjct: 2037 MPSQYCLALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLAGHSFSFTSADDIAQVL 2096

Query: 634  FTKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNI 671
            F +LK P   + KT                      G+  +T++D+       +P+   I
Sbjct: 2097 FLELKLPPNGEMKTQGGRKTLGSTRRGTESDRKLRLGRRFSTSKDILNKLKDLHPLPGLI 2156

Query: 672  LEWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            LEWR++S   +     L    H+N   R +R++   S + T TGR+   EPN+QN+P   
Sbjct: 2157 LEWRRISNAITKVVFPLQREKHLNPFLRMERIYPV-SQSHTATGRITFTEPNIQNVPRDF 2215

Query: 728  DLGQK--------------------------------------------------IRRAF 737
            ++                                                     +R AF
Sbjct: 2216 EIKMPTLVRESPPSQASGKGQLAMARQNQKVYGLHPGQRTVLEKTSDRGVPFSVSMRHAF 2275

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            +  P   +++ADYSQ+ELRILAH+++   L QV  +  D+ R +AAE   +  + V   +
Sbjct: 2276 VPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNSGADVFRSIAAEWKMIEPDAVGDNL 2335

Query: 798  RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
            R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++  T    R++G
Sbjct: 2336 RQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYKGINHFMRDTVKNCRRDG 2395

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL------ 911
            +VETI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L      
Sbjct: 2396 FVETILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKVATVNIQKQLETFHPT 2455

Query: 912  -EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQII 944
             + H     M                          +LQ+HDEL++EV EE++   +QI+
Sbjct: 2456 FKSHGHRESMLQSDRAGLLPKRKVKGMFCPMRGGFFILQLHDELLYEVAEEDVVQVAQIV 2515

Query: 945  VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + ME A    I L V LKV +K+  +W E
Sbjct: 2516 KNEMECA----IKLSVKLKVKVKIGASWGE 2541


>gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 321

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/324 (48%), Positives = 221/324 (68%), Gaps = 4/324 (1%)

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
               L ++   D P+ K ++++R +SK+KSTY D LP  IN RT R+HT Y  A  +TGR
Sbjct: 2   AEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGR 61

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           L+S +PNLQNIPI+T  G++IR+AF++P   KL++ADYSQIELRI+AH+A+   L   F 
Sbjct: 62  LSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFR 121

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           N LD+HR  AAE+FGV +E V+  MRR AK INF +IYG+S F LA Q+ + R ++  Y+
Sbjct: 122 NDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYV 181

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF R+PG+ +Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER AINAP+
Sbjct: 182 DRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPM 241

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AM++V+  LE+  L  +++LQ+HDELV EV E+ +   S+ I   M  A 
Sbjct: 242 QGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIRPHMSGAA 301

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V + V NNW E +
Sbjct: 302 ----ELAVPLLVEVGVGNNWDEAH 321


>gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
 gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
          Length = 829

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/529 (34%), Positives = 284/529 (53%), Gaps = 52/529 (9%)

Query: 450 LSYLKKFFENEHFLKIGH--NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           L+ L+  F +    KI H  NI +          +   FED+ +++Y L++  +  D+  
Sbjct: 330 LNMLQDLFTDRSIKKIFHSDNIPHPDP-------TNDSFEDLKVIAYPLNTLNT--DLEY 380

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +   +L  T +E    R + +                        +  L   +  EK+L 
Sbjct: 381 LFSHYLGETSREAFHKRLNEL------------------------YEKLCNAMFTEKVLT 416

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y ++DKP+I+ +  ME  GI +D + L  +S +IS  L  +E  I+D++G+ F+L SPK
Sbjct: 417 LYYKVDKPLINAIKHMEKNGISLDVEQLLSLSTQISGKLEEIESKIFDIAGKTFSLQSPK 476

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF +++ P   K K+G   T  + L  ++     I   +L WR   K+K+ Y D 
Sbjct: 477 QLGKVLFEEMQIPVQKKLKSGLSSTDNEVLTSLSIQGYEIADYLLSWRHYIKLKTAYIDP 536

Query: 688 LPNHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           L   +N      R+ T YS   T+TGRL+S  PNLQNIP + +    IR+ F +      
Sbjct: 537 LLLKVNPNEEKHRISTTYSATLTLTGRLSSSNPNLQNIPREKE----IRKIFTAKEGHHF 592

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           + ADYSQIELRILA+IA +  L     +  D+H + A++IF    +K++P +R  AK +N
Sbjct: 593 LCADYSQIELRILAYIANVERLKCALASGTDLHTLTASQIFKT--DKITPDLRNKAKAVN 650

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGI+ F L+ QL I + EAA YI++YF  +P I  Y+   +N  R++ YV+T+  R
Sbjct: 651 FGIVYGITNFGLSKQLAISKEEAASYIQKYFDEYPEIKIYMNHIRNQARKDTYVKTMMNR 710

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           +     INS   +I  + ER+AINAPIQG+AADI R AM+ + +   + +L + M++Q+H
Sbjct: 711 KCPIQNINSNNRTISLVAERSAINAPIQGTAADIIRTAMVRMAQ---EKELLSHMVMQVH 767

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DELVFE+  + I   ++ I   ME++        +PL V +K   N  E
Sbjct: 768 DELVFELETDVIQQLAKKIKRIMEESHG------IPLLVELKHGPNLGE 810



 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/286 (37%), Positives = 164/286 (57%), Gaps = 9/286 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++D  +F++ A++A P L+  H+ LPV A+ GF N+L K L+         +  V  
Sbjct: 4   TLMIIDAYNFLFSAYFALPNLT--HNELPVGAVYGFLNILLKHLRTK-----PEYLVVAL 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   TFR  IY +YKANRP +P  L PQ  L+R       +  +EI+GFEADD+IAT  
Sbjct: 57  DHGKSTFRETIYNNYKANRPPVPGNLTPQFALLRECVDVLNLNPLEIEGFEADDVIATLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               K    + I+STDKDLMQLV+    + + +K   I +  V +K+G+ P +M    +L
Sbjct: 117 RKFSKSDLKIKILSTDKDLMQLVNENVHVINPIKNRIIGVNEVKEKFGVFPTQMTDFLSL 176

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD+ DNIPG+PGIG KTAA LL  +G +EN     + I   + +E++L + +   LS++
Sbjct: 177 VGDTSDNIPGVPGIGVKTAAKLLNTFGAIENF--RLNEISPARIKESLLRHHDQLTLSKR 234

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           LV L  D+ I   L+ +  +  +G +L++FL+   F  LI ++  +
Sbjct: 235 LVSLVDDINIQCSLDCIRYQQQDGTKLLAFLEKYGFKNLIPKLVKS 280


>gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 314

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 146/320 (45%), Positives = 210/320 (65%), Gaps = 6/320 (1%)

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           +E+++   + + K ++E R LSK+KSTY D LP  +N +T RVHT Y  A T TGRL+S 
Sbjct: 1   MEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSS 59

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIPI+ + G++IR+AFI+     +++ADYSQIELRI+AH++    L   F    D
Sbjct: 60  DPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKD 119

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IHR  AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A  Y+  YF
Sbjct: 120 IHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMDLYF 179

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+P + +++   +   +  GYVET+FGRR++  +INS  +  R   ER AINAP+QG+A
Sbjct: 180 QRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTA 239

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           ADI +RAMI + + +  H    +M++Q+HDELVFEV  E++    + I   ME A     
Sbjct: 240 ADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA---- 294

Query: 957 NLRVPLKVNIKVSNNWQEEN 976
            L VPL V + V  NW E +
Sbjct: 295 ELVVPLIVEVGVGKNWDEAH 314


>gi|304389499|ref|ZP_07371462.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327309|gb|EFL94544.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 637

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/688 (21%), Positives = 282/688 (40%), Gaps = 83/688 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M K+  L ++DG S  +RAF++  P   R   G+  NA+ GF +ML  +++  +     +
Sbjct: 1   MSKK-RLLVLDGHSLAFRAFFSRDPEHFRTSTGVYTNAVHGFFSMLLTMIRAEK----PT 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H    FD    +FR +IYPDYK  R + P   + Q+  ++    A GI  +     EADD
Sbjct: 56  HIGAAFDLSRHSFRTDIYPDYKGGRAETPPEFIGQVENIQKMLSAMGIKWLTEPNVEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           I+AT      K G  V + S D+D  QL+S    +    +     +++  + V  ++ + 
Sbjct: 116 ILATLATKGTKSGMEVLVSSGDRDSFQLISDDVTVLYPGRSISETKRMTPQAVKDRYDVW 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++   + AL G+  DN+PG+P +G K AA  + EYG+L+++L +   +K  KR EN+ +
Sbjct: 176 PQQYPEIAALVGEHADNLPGVPLVGEKVAASWINEYGSLDSLLEHRDELKG-KRGENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN---RVATTY 292
           + +    +R+L  LRTD+ + + LE L     +   +      LEF ++     R+   +
Sbjct: 235 HIDDVLRNRQLNRLRTDLQLPLSLEDLHWTGFDPQAIQEICDELEFKQMRTQILRLGQAF 294

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              + N +   ++++ T+ +    + +      +   Q   L    +        Q    
Sbjct: 295 GVTSINGDSATMELDRTQTEPEPQDADGYG--VVPEPQRFRLGSDFTATQFSDWLQNTQS 352

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
             L   +   I       + N +    ++            I+ D +       +  A++
Sbjct: 353 SSLGIWAVGNIG------VTNPRIDWLFLAAERDCQGQCVLIVPDELTPQTEHLLCDALA 406

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                                                              K  ++ K  
Sbjct: 407 -----------------------------------------------GDRKKTVYDAKSL 419

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-------ILKSR 524
           +  LH +G  + G   DI ++ Y+++   +    A + ++ L +   E       I +  
Sbjct: 420 RHALHAHGWELHGAVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDEKPSDISKISEQM 479

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV-----YERLDKPMIDV 579
              + ++   +S  Q       N  +  + LL+ +  +E+L H         L+ P+  +
Sbjct: 480 TLDLGVELDGNSSAQPWPQTLINQAIYAYALLQMQPTLEQLAHFRQVDGLLELENPLSYI 539

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           + +ME TGI ID   L + +  +   +   +++ +D  G + NLSSPKQL ++LFT+L+ 
Sbjct: 540 LEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLSSPKQLQEVLFTQLEL 599

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           P   K K        +  + +    + +
Sbjct: 600 PKTKKPKPDILLMR-RLWKSLLATTHTL 626


>gi|301786873|ref|XP_002928855.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Ailuropoda
            melanoleuca]
          Length = 2634

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 172/691 (24%), Positives = 291/691 (42%), Gaps = 129/691 (18%)

Query: 406  PIAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKE----ILSYLKKFFEN 459
             + +A+     +D   F  + E    ++S      S       KE    +LS  ++  + 
Sbjct: 1945 LVGLAVCW-GGRDAYYFSLQKEQTHPEISSSLVAPSLDPGLTVKERIWYLLSCFQEESDK 2003

Query: 460  EHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
            E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +   
Sbjct: 2004 ERSVIIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSKEPTLHSIVSSFLPHELP 2063

Query: 519  EILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
             +L   ++   I  +  +   EH     A   S +       L   L  E L  V+ +++
Sbjct: 2064 -LLDGIETGQGIQSLGLNVNSEHSGRYRASVESILTFNAMNQLNSLLKKENLKDVFCKVE 2122

Query: 574  KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
             P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++L
Sbjct: 2123 MPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVL 2182

Query: 634  FTKLKFPS----------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            F +LK P                       G K K G+  +T++D+       +P+   I
Sbjct: 2183 FLELKLPPNGEIKNQNSKKTLGSTRRGNDNGRKLKLGKQFSTSKDVLNKLKALHPLPGLI 2242

Query: 672  LEWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            LEWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   
Sbjct: 2243 LEWRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRVTFTEPNIQNVPRDF 2301

Query: 728  DLGQK---------------------------------------------------IRRA 736
            ++                                                      +R A
Sbjct: 2302 EIKMPTVVGESPPSQALGKGLLPMNRGKEKSCGINSGHQAQMEERASDRGMPFSVSMRHA 2361

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 2362 FVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2421

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++ +T    +++
Sbjct: 2422 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINHFMRETVKNCKRD 2481

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   IN      +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2482 GFVQTILGRRRYLPGINDNNPYHKAHAERQAINTTVQGSAADIVKVATVNIQKQLETFHS 2541

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2542 TFKSHGHREGMLQSERTGLLPKRKLQGVFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2601

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A      L V LKV +K+  +W E
Sbjct: 2602 VKNEMESAM----ELSVKLKVKVKIGASWGE 2628


>gi|139394648|ref|NP_955452.3| DNA polymerase theta [Homo sapiens]
 gi|325511332|sp|O75417|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase eta
 gi|225000062|gb|AAI72289.1| Polymerase (DNA directed), theta [synthetic construct]
          Length = 2590

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 293/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1901 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1959

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1960 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 2018

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 2019 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 2078

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 2079 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 2138

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 2139 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 2198

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 2199 EWRRITNAITKVVFPLQREKCLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 2257

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2258 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 2317

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 2318 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2377

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2378 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 2437

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2438 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 2497

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2498 TFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2557

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2558 VKNEMESA----VKLSVKLKVKVKIGASWGE 2584


>gi|119599917|gb|EAW79511.1| polymerase (DNA directed), theta, isoform CRA_b [Homo sapiens]
          Length = 1762

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 293/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1073 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1131

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1132 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 1190

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 1191 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 1250

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 1251 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 1310

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 1311 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 1370

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 1371 EWRRITNAITKVVFPLQREKCLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 1429

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 1430 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 1489

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 1490 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 1549

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 1550 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 1609

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 1610 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 1669

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 1670 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 1729

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 1730 VKNEMESA----VKLSVKLKVKVKIGASWGE 1756


>gi|119599919|gb|EAW79513.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
 gi|119599920|gb|EAW79514.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
          Length = 2270

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 293/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1581 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1639

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1640 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 1698

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 1699 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 1758

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 1759 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 1818

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 1819 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 1878

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 1879 EWRRITNAITKVVFPLQREKCLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 1937

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 1938 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 1997

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 1998 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2057

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2058 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 2117

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2118 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 2177

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2178 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2237

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2238 VKNEMESA----VKLSVKLKVKVKIGASWGE 2264


>gi|119599916|gb|EAW79510.1| polymerase (DNA directed), theta, isoform CRA_a [Homo sapiens]
          Length = 2725

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 293/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 2036 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 2094

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 2095 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 2153

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 2154 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 2213

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 2214 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 2273

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 2274 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 2333

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 2334 EWRRITNAITKVVFPLQREKCLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 2392

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2393 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 2452

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 2453 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2512

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2513 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 2572

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2573 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 2632

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2633 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2692

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2693 VKNEMESA----VKLSVKLKVKVKIGASWGE 2719


>gi|62089320|dbj|BAD93104.1| DNA polymerase theta variant [Homo sapiens]
          Length = 2214

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 293/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1525 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1583

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1584 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 1642

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 1643 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 1702

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 1703 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 1762

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 1763 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 1822

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 1823 EWRRITNAITKVVFPLQREKCLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 1881

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 1882 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 1941

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 1942 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2001

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2002 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 2061

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2062 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 2121

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2122 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2181

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2182 VKNEMESA----VKLSVKLKVKVKIGASWGE 2208


>gi|76364226|gb|AAR08421.2| DNA polymerase theta [Homo sapiens]
          Length = 2590

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 293/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1901 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1959

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1960 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 2018

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 2019 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 2078

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 2079 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 2138

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 2139 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 2198

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 2199 EWRRITNAITKVVFPLQREKCLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 2257

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2258 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 2317

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 2318 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2377

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2378 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 2437

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2438 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 2497

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2498 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2557

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2558 VKNEMESA----VKLSVKLKVKVKIGASWGE 2584


>gi|315656745|ref|ZP_07909632.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492700|gb|EFU82304.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 637

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/688 (21%), Positives = 282/688 (40%), Gaps = 83/688 (12%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M K+  L ++DG S  +RAF++  P   R   G+  NA+ GF +ML  +++  +     +
Sbjct: 1   MSKK-RLLVLDGHSLAFRAFFSRDPEHFRTSTGVYTNAVHGFFSMLLTMIRAEK----PT 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H    FD    +FR +IYPDYK  R + P   + Q+  ++    A GI  +     EADD
Sbjct: 56  HIGAAFDLSRHSFRTDIYPDYKGGRAETPPEFIGQVENIQKMLSAMGIKWLTEPNVEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           I+AT      K G  V + S D+D  QL+S    +    +     +++  + V  ++ + 
Sbjct: 116 ILATLATKGTKSGMEVLVSSGDRDSFQLISDDVTVLYPGRSISETKRMTPQVVKDRYDVW 175

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++   + AL G+  DN+PG+P +G K AA  + EYG+L+++L +   +K  KR EN+ +
Sbjct: 176 PQQYPEIAALVGEHADNLPGVPLVGEKVAASWINEYGSLDSLLEHRDELKG-KRGENLRQ 234

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN---RVATTY 292
           + +    +R+L  LRTD+ + + LE L     +   +      LEF ++     R+   +
Sbjct: 235 HIDDVLRNRQLNRLRTDLQLPLSLEDLHWTGFDPQAIQEICDELEFKQMRTQILRLGQAF 294

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
              + N +   ++++ T+ +    + +      +   Q   L    +        Q    
Sbjct: 295 AVTSINGDSATMELDRTQTEPEPQDADGYG--VVPEPQRFRLGSDFTATQFSDWLQNTQS 352

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
             L   +   I       + N +    ++            I+ D +       +  A++
Sbjct: 353 SSLGIWAVGNIG------VTNPRIDWLFLAAERDCQGQCVLIVPDELTPQTEHLLCDALA 406

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                                                              K  ++ K  
Sbjct: 407 -----------------------------------------------GDRKKTVYDAKSL 419

Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-------ILKSR 524
           +  LH +G  + G   DI ++ Y+++   +    A + ++ L +   E       I +  
Sbjct: 420 RHALHAHGWELHGAVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDEKPSDISKISEQM 479

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV-----YERLDKPMIDV 579
              + ++   +S  Q       N  +  + LL+ +  +E+L H         L+ P+  +
Sbjct: 480 TLDLGVELDGNSSAQPWPQTLINQAIYAYALLQMQPTLEQLAHFRQVDGLLELENPLSYI 539

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           + +ME TGI ID   L + +  +   +   +++ +D  G + NLSSPKQL ++LFT+L+ 
Sbjct: 540 LEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLSSPKQLQEVLFTQLEL 599

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           P   K K        +  + +    + +
Sbjct: 600 PKTKKPKPDILLMR-RLWKSLLATTHTL 626


>gi|296226149|ref|XP_002807658.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Callithrix
            jacchus]
          Length = 2550

 Score =  383 bits (983), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/691 (24%), Positives = 298/691 (43%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE---NEH 461
            + +A+     +D   F  + E    ++S      S   +   K+ + +L+   +   +E 
Sbjct: 1861 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRIWHLQSCLQKESDEE 1919

Query: 462  FLKIGHN-IKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
               + ++ I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1920 RSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 1978

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 1979 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 2038

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 2039 PSQYCLALLELNGIGFSTAECESQKHILQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 2098

Query: 635  TKLKFPS----------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P                       G K + G+  +T++D+       +P+   IL
Sbjct: 2099 LELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 2158

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 2159 EWRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 2217

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2218 IKMPTLVGESPPSQAVGKGLLPMGRGKIKKGWSLNPGCQAQMEERAAERGMPFSVSMRHA 2277

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV  +  D+ R +AAE   +  E V   
Sbjct: 2278 FVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNSGADVFRSIAAEWKMIEPESVGDD 2337

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2338 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMRETVKNCKRD 2397

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2398 GFVQTILGRRRYLPGIKENNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFHS 2457

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2458 TFKSHGHREGMLQSDQTGLLPKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2517

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2518 VKNEMESA----VKLSVKLKVKVKIGASWGE 2544


>gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 317

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/321 (47%), Positives = 210/321 (65%), Gaps = 5/321 (1%)

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           + Q    D P+ K ++E+R L+K+KSTY D LP  IN  T RVHT Y  A T TGRL+S 
Sbjct: 1   MLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSST 60

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++ + G++IR+AF++P   K+++ DYSQIELRI+AH++    L   F +  D
Sbjct: 61  DPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKD 120

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           IH   AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+ +YF
Sbjct: 121 IHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYF 180

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            R+PG+ +Y+E T++   Q GYVETIFGRR+H  EI S  +  R   ERAAINAP+QG+A
Sbjct: 181 ERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTA 240

Query: 897 ADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           ADI ++AM+ V + +E       K+L+Q+HDELVFEV E  ++     +   ME A    
Sbjct: 241 ADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAA--- 297

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
             L VPL       +NW+  +
Sbjct: 298 -ELAVPLVAEAGHGDNWEHAH 317


>gi|332225568|ref|XP_003261953.1| PREDICTED: DNA polymerase theta, partial [Nomascus leucogenys]
          Length = 2473

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/691 (24%), Positives = 297/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEIL----SYLKKFFENE 460
            + +A+     +D   F  + E    ++S      S   +   K+ +    S L+K  + E
Sbjct: 1784 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWNLQSCLRKESDKE 1842

Query: 461  HFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1843 RSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 1901

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 1902 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 1961

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+L+S   + ++LF
Sbjct: 1962 PSQYCLALLELNGIGFSAAECESQKHIMQAKLDAIETQAYQLAGHSFSLTSSDDIAEVLF 2021

Query: 635  TKLKFPS----------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P                       G K + G+  +T++D+       +P+   IL
Sbjct: 2022 LELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 2081

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+  +EPN+QN+P   +
Sbjct: 2082 EWRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFIEPNIQNVPRDFE 2140

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2141 IKMPTLVGESPPSQAVGKGLLPMGRGKYTKGCSLNPRCQAQMEERAADRGMPFSISMRHA 2200

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L Q      D+ R +AAE   +  E V   
Sbjct: 2201 FVPFPGGLILAADYSQLELRILAHLSHDRRLIQALNTGADVFRSIAAEWKMIEPESVGDD 2260

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2261 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMRETVKNCKRD 2320

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2321 GFVQTILGRRRYLPGIEDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFHS 2380

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2381 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2440

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2441 VKNEMESA----VKLSVKLKVKVKIGASWGE 2467


>gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 854

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/532 (31%), Positives = 265/532 (49%), Gaps = 49/532 (9%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVL-----HRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
            L  + E      I  + K   + +     +     +R  +      Y+L   ++SHD+ 
Sbjct: 362 ELSSWLERGSV--ITSDYKRLLVAMGVPSDYSRVWDLRSVD------YLLHPDKASHDMP 413

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           S                         +      E   E +  + +L   L   +    L 
Sbjct: 414 S-------------------------VMGDDCPESTEERAMALWRLRDDLSQTIESRGLS 448

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            V   +D P++ V+  ME +GI++++ +L+ V +++ + L  + E I   +GE  NL+SP
Sbjct: 449 EVLYGIDMPLVPVLVSMEKSGIKLEEPVLQDVISDLKERLERIVEEITSAAGESINLNSP 508

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQLSKIKST 683
           KQ+G +LF KL  P   KTKTG + T    LEQ+     P   +   +LE R LSK+ S 
Sbjct: 509 KQVGCLLFEKLGLPPVKKTKTG-YSTDVTVLEQLAELPEPHNAVPSMLLEHRALSKMSSG 567

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-T 742
           +A  L + +        TF S  +T TGRL+S +PNLQN+P   +   +I+ + I     
Sbjct: 568 FALPLMSSVCGDGIIRSTFES-DTTGTGRLSSRDPNLQNLPAYGEWSDRIKSSLIPREKG 626

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           +  ++ADYSQ+ELR+LAHI+    L  +F +  DIH   A+ +FGV+   V+ ++RR AK
Sbjct: 627 RCFVAADYSQVELRVLAHISGEKRLADIFRSGRDIHTETASMVFGVDSSMVTKELRRSAK 686

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            + F ++YG+S F LA +L + RSEA   + RYF   PG+  Y+ K+ +     GY ET+
Sbjct: 687 MVTFGLLYGMSAFGLAKRLGVGRSEADRIMSRYFAALPGVEAYVTKSADEAIAKGYTETL 746

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           FGR    +E+ +  +  R    R AIN+PIQG+AAD+ ++AMI+V +S  +      M+L
Sbjct: 747 FGRIRPLEEVVTGNTRDRGHIRRVAINSPIQGTAADLAKKAMIAVSRSFAE-DPDVSMVL 805

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q+HD +V E PEE        +   M+       +L VPL+   K+  +  E
Sbjct: 806 QVHDSIVCECPEERSEEVLAELQEIMKNVA----SLAVPLETEGKIGFSLAE 853



 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/336 (31%), Positives = 166/336 (49%), Gaps = 20/336 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  E  +  VDG    +RAFYA P L+   DG P NA+ GF NML K+    +KE     
Sbjct: 1   MT-EGPIMFVDGHGLAFRAFYAIPELT-APDGTPTNALVGFFNMLSKI----KKEWAPQS 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            +V+FD P  TFR+E++ +YK  R   PE    QLP+++      GIP I   G EADD+
Sbjct: 55  LSVVFDAPGKTFRHEMFEEYKKGRKPTPEEFKVQLPILKKMLGLLGIPVICRPGVEADDV 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I   +     +G  V ++++DKD++Q++     +    K      + D E    ++G PP
Sbjct: 115 IGAVSREYAYKGTPVLVVTSDKDMLQILDEGITVIRPGKGISSFNRWDAETFQGEYGFPP 174

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +M    AL GDS+DN+PG+PGIG KTA  LL +YG+LE IL + + +    +R+ + E 
Sbjct: 175 ARMADYLALVGDSVDNVPGVPGIGDKTARRLLGKYGDLEGILAHTADLTAG-QRKKLEEN 233

Query: 237 AETARLSRKLVMLRTD-VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-----AT 290
           A+ AR S  L  L  D  P  +    L+    +    I+  + L  + L   +       
Sbjct: 234 ADLARKSLILTTLSVDGAPDDV---DLVCGVPDSDGFIALCRELGMSSLERSMGDLICGE 290

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
           T     +++E     ++  E K + ++  +  D   
Sbjct: 291 TSFSGDSSVEKEAQSLSLVELKSVELDELLMCDELA 326


>gi|224043967|ref|XP_002187783.1| PREDICTED: similar to polymerase (DNA directed), theta [Taeniopygia
            guttata]
          Length = 2588

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/690 (24%), Positives = 300/690 (43%), Gaps = 128/690 (18%)

Query: 407  IAIAISTLDQKDDT-SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN----EH 461
            + +A+    +     S +      ++S+  +     ++    E L++L+++ +     E 
Sbjct: 1897 VGLAVCWGGKDAYYISLQQTQDQTEISLSLAPPPLDQSLPVTERLNHLQQYLQKKTKKER 1956

Query: 462  FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRK 518
             L +   I++ K +L   GIS+ G FED  +  ++LDSG   H + S+   +L       
Sbjct: 1957 SLIMYDFIQHYKTLLMACGISLEGSFEDPKVACWLLDSGSKEHTLHSMVTNFLPSELPLL 2016

Query: 519  EILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
            E + + +   S+ +    D   +  A   S ++  +   L  +L  E L  V+ +++ P 
Sbjct: 2017 EGVGTGQGVQSLGLSASRDQSGRYRAAIESVLVFNVMDQLHKELQKENLTDVFSKVEMPT 2076

Query: 577  IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
               +S +E+ GI       +     +   L  +E   Y L+G  F+L+SP  + ++LF +
Sbjct: 2077 HYCLSLLELNGIGFSTTAYETQKQVMQAKLSQIETKAYQLAGHSFSLTSPDDIAEVLFLE 2136

Query: 637  LKFP----------------------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
            LK P                       G + +  +  +T +D+ +     +P+   ILEW
Sbjct: 2137 LKLPQNGDVKVQGNKKTLGYTRRATAKGNRVRLSKQFSTTKDVLEKLKTLHPLPGLILEW 2196

Query: 675  RQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNI------- 723
            R+++   +     L     +N     +R++   S   T TGR++  EPN+QN+       
Sbjct: 2197 RRINNAITKVVYPLQREKRLNSALGMERIYPI-SQTHTATGRVSFTEPNIQNVPRDFEIE 2255

Query: 724  -------------------------------------------PIKTDLGQK----IRRA 736
                                                        I  + G +    +R A
Sbjct: 2256 MPTVVEESPPSQAHGNVNSHAALGGRCRKRSSILPNGLKVQAANISEERGIQFSVSMRHA 2315

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L Q      D+ + +AAE   ++ E V  +
Sbjct: 2316 FVPFPGGLILAADYSQLELRILAHLSCDCRLIQALNGGTDVFKSIAAEWKMIDPEAVGER 2375

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
             R+ AK I + IIYGI    L  Q+ I  +EAA+YI+ +  R+ G+ +++ +T    R++
Sbjct: 2376 TRQQAKQICYGIIYGIGAKSLGEQMGIDENEAANYIESFKSRYTGVQKFLRETVRSCRRD 2435

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE---- 912
            G+V+TI GRR +   I  P    +   ER A+N  +QGSAADI + A +++ K LE    
Sbjct: 2436 GFVQTILGRRRYLPAIKDPNPYSKAHAERQAVNTTVQGSAADIVKTATVNIQKRLEAFPS 2495

Query: 913  --------------------DHKLATKM---------LLQIHDELVFEVPEEEITTASQI 943
                                  K  T M         +LQ+HDEL++EV E+++   +QI
Sbjct: 2496 VFKSHGHLESSFQRDKTGRLSRKRNTGMLHPIRGGFFILQLHDELLYEVAEDDVIQVAQI 2555

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +   ME A    I L V L V +K+  +W 
Sbjct: 2556 VKREMENA----IKLSVKLDVKVKIGPSWG 2581


>gi|194222793|ref|XP_001502374.2| PREDICTED: similar to polymerase (DNA directed), theta [Equus
            caballus]
          Length = 2701

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/690 (24%), Positives = 294/690 (42%), Gaps = 129/690 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S       K+ + +L+  F+ E    
Sbjct: 2013 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPRLTMKDRMWHLRSCFQKESDKE 2071

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + +   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 2072 RSVIVYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSKEPTLHSIVTSFLPHELP- 2130

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++   I  +  +   EH     A   S +I      L   L  E L  ++ +++ 
Sbjct: 2131 LLEGIETGQGIQSLGLNVDTEHSGRYRASVESILIFNSMNQLNSLLKKENLQDIFCKVEM 2190

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 2191 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 2250

Query: 635  TKLKFPS----------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P                       G K + G+  +T++D+       +P+   IL
Sbjct: 2251 LELKLPPNGEMKNQGGKKTLGSTRRGNDNGRKLRLGKQFSTSKDILNKLKALHPLPGLIL 2310

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 2311 EWRRITNAITKVVFPLQRAKRLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 2369

Query: 729  LGQK---------------------------------------------------IRRAF 737
            +                                                      +R AF
Sbjct: 2370 IKMPTLVGESPPSQALGKGLLPMGRGNEKSHGLNLGHQAQTEERASDRGMPFSVSMRHAF 2429

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            +  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   +  E V   +
Sbjct: 2430 VPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDL 2489

Query: 798  RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
            R+ AK I + I+YG+    L  Q+ I  ++AA YI  +  ++ GI+ ++ +T    +++G
Sbjct: 2490 RQQAKQICYGILYGMGAKSLGEQMGIKENDAACYIDSFKSKYTGINHFMRETVKNCKRDG 2549

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL------ 911
            +V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L      
Sbjct: 2550 FVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFHSS 2609

Query: 912  -EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQII 944
             + H     M                          +LQ+HDEL++EV EE++   +QI+
Sbjct: 2610 FKSHGHREGMLQSDRTGLLPKRKLQGMFSPIRGGFFILQLHDELLYEVAEEDVVQVAQIV 2669

Query: 945  VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + ME A    I L V LKV +K+  +W E
Sbjct: 2670 KNEMESA----IKLSVKLKVKVKIGASWGE 2695


>gi|114588750|ref|XP_001165287.1| PREDICTED: DNA polymerase theta isoform 4 [Pan troglodytes]
          Length = 2499

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 294/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1810 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1868

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1869 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 1927

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 1928 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 1987

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 1988 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 2047

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 2048 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 2107

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+  +EPN+QN+P   +
Sbjct: 2108 EWRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFIEPNIQNVPRDFE 2166

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2167 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 2226

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 2227 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2286

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2287 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 2346

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2347 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 2406

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2407 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2466

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2467 VKNEMESA----VKLSVKLKVKVKIGASWGE 2493


>gi|114588754|ref|XP_001165216.1| PREDICTED: DNA polymerase theta isoform 3 [Pan troglodytes]
          Length = 2500

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 294/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1811 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1869

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1870 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 1928

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 1929 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 1988

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 1989 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 2048

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 2049 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 2108

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+  +EPN+QN+P   +
Sbjct: 2109 EWRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFIEPNIQNVPRDFE 2167

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2168 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 2227

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 2228 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2287

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2288 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 2347

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2348 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 2407

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2408 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2467

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2468 VKNEMESA----VKLSVKLKVKVKIGASWGE 2494


>gi|114588756|ref|XP_001165181.1| PREDICTED: DNA polymerase theta isoform 2 [Pan troglodytes]
          Length = 1762

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 294/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1073 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1131

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1132 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 1190

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 1191 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 1250

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 1251 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 1310

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 1311 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 1370

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+  +EPN+QN+P   +
Sbjct: 1371 EWRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFIEPNIQNVPRDFE 1429

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 1430 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 1489

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 1490 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 1549

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 1550 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 1609

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 1610 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 1669

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 1670 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 1729

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 1730 VKNEMESA----VKLSVKLKVKVKIGASWGE 1756


>gi|114588748|ref|XP_516680.2| PREDICTED: DNA polymerase theta isoform 5 [Pan troglodytes]
 gi|332817593|ref|XP_001165150.2| PREDICTED: DNA polymerase theta isoform 1 [Pan troglodytes]
          Length = 2596

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 294/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1907 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1965

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1966 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 2024

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 2025 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 2084

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 2085 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 2144

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 2145 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 2204

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+  +EPN+QN+P   +
Sbjct: 2205 EWRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFIEPNIQNVPRDFE 2263

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2264 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 2323

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 2324 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2383

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2384 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 2443

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2444 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 2503

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2504 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2563

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2564 VKNEMESA----VKLSVKLKVKVKIGASWGE 2590


>gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
 gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
          Length = 816

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/529 (34%), Positives = 283/529 (53%), Gaps = 52/529 (9%)

Query: 450 LSYLKKFFENEHFLKIGH--NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           L+ ++    ++   KI H  NI +              FED+ +++Y L++  +  D+  
Sbjct: 330 LNTVQDLLTDQSIKKIFHSDNIPHPDPA-------NESFEDLKVIAYPLNTLNT--DLEY 380

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +   +L  T  E    R + +                        +  LR  +  EK+L 
Sbjct: 381 LFSHYLGETSPEAFHKRLNEL------------------------YDKLRNAMFTEKVLT 416

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +Y ++DKP+I+V+  ME  GI +D + L  +S +IS  L  +E  I+D +G+ F+L SPK
Sbjct: 417 LYYKVDKPLINVIKHMEKNGISLDVEQLLSLSTQISGKLEEIENKIFDTAGKTFSLQSPK 476

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QLG +LF +++ P   K KTG   T  + L  ++     I   +L WR   K+K+ Y D 
Sbjct: 477 QLGKVLFEEMQIPVQKKLKTGLSSTDNEVLTSLSSQGYEIADYLLSWRHYIKLKTAYIDP 536

Query: 688 LPNHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           L   +N   +  R+ T YS   T+TGRL+S  PNLQNIP +    + IR+ F +      
Sbjct: 537 LLLKVNPSEKKHRISTTYSTTLTLTGRLSSSNPNLQNIPRE----KNIRKIFTAKEGHYF 592

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           + ADYSQIELRILA+IA +  L     +  D+H + A++IF    +K++P +R  AK +N
Sbjct: 593 LCADYSQIELRILAYIANVERLKCALASGTDLHTLTASQIFKT--DKITPNLRNKAKAVN 650

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           F I+YGI+ F L+ QL I + EAA YI++YF  +P I  Y+   +N  +++ YV+TI  R
Sbjct: 651 FGIVYGITNFGLSKQLAISKEEAASYIQKYFDEYPEIKSYMNHIRNQAKKDTYVKTIMNR 710

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           +     INS   +I  I ER+AINAPIQG+AADI R AM+ + +   + +L + M++Q+H
Sbjct: 711 KCPIQNINSDNRAISLIAERSAINAPIQGTAADIIRAAMVRMAQ---EKELLSHMVMQVH 767

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DELVFE+  + I   ++ I   ME+         +PL V +K   N  E
Sbjct: 768 DELVFELETDAIQQLAKKIKQIMEEPHG------IPLLVELKHGPNLGE 810



 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 167/302 (55%), Gaps = 9/302 (2%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++D  +F++ A++A P L+  H+ LPV A+ GF N+L K L+         +  V  
Sbjct: 4   TLMIIDAYNFLFSAYFALPNLT--HNELPVGAVYGFLNILLKHLRTK-----PEYLVVAL 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    TFR  IY +YKANRP +P  L PQ  L+R       +  +EI+GFEADDIIAT  
Sbjct: 57  DNGKSTFRETIYNNYKANRPPVPGNLTPQFALLRECVDVLNLNPLEIEGFEADDIIATLV 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               K    + I+STDKDLMQLVS    + + +K   I +  V +K+G+ P +M    +L
Sbjct: 117 RKFSKSDLKIKILSTDKDLMQLVSENVHVINPIKNRIIGVNEVKEKFGVFPTQMTDFLSL 176

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD+ DNIPG+PGIG KTAA LL  +G ++N     + +   + +E++L +     LSRK
Sbjct: 177 VGDTSDNIPGVPGIGVKTAAKLLNTFGAIDNF--RLNEVSPARIKESLLRHHGQLTLSRK 234

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305
           LV L  D+ I   L+ +  +  +G +L++FL+   F  LI ++  +    + ++      
Sbjct: 235 LVSLVDDINIQCSLDCIRYQQQDGTKLLAFLEKYGFKNLIPKLVKSTPKQSLHVTKSTNK 294

Query: 306 IN 307
           IN
Sbjct: 295 IN 296


>gi|327282241|ref|XP_003225852.1| PREDICTED: DNA polymerase theta-like [Anolis carolinensis]
          Length = 2435

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 172/686 (25%), Positives = 294/686 (42%), Gaps = 125/686 (18%)

Query: 407  IAIAISTLDQKDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH-- 461
            + +A+     KD     ++      I++S   +  S  +N    E L +L+   ++    
Sbjct: 1751 VGLAVCW-GGKDAFYISLQQKLKEQIEMSASLAPPSLDQNLTVAERLEHLQSCLQDSKRD 1809

Query: 462  -FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-- 517
              L +   I++ K +L   GIS+ G FED  +  ++LD G +   + ++   +L      
Sbjct: 1810 FSLAMYEFIQHYKTLLKACGISLAGSFEDPKVACWLLDPGSNERSLHNMVASFLPEELFL 1869

Query: 518  --KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
              K        SI ++  +D   +  A   S ++  L   L   L  + L  ++ +++ P
Sbjct: 1870 LDKIGTGQGNQSIGLNASADHSGRYRAAVESVLVFHLMDKLSALLQKDNLQDIFHKMEMP 1929

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
                ++ +E+ GI       +     +   L   E  IY L+G  F+L+ P  + ++LF 
Sbjct: 1930 NQYCLALLELNGIGFSTAECETQKHVMEAKLSETENQIYQLAGHSFSLTCPDDIAEVLFL 1989

Query: 636  KLKFPSGAKTK-----------------------TGQWKTTAQDLEQINCGDNPIIKNIL 672
            +LK PS  ++K                       + Q+ TT   LE++    +P+   IL
Sbjct: 1990 ELKLPSDGESKMQRGKKTLGYTGRAVVNGNRVRLSKQFSTTKGVLEKLKAL-HPLPGLIL 2048

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S  +T TGR++  EPN+QN+P   +
Sbjct: 2049 EWRKITNAITKVIFPLQREKLLNPILGMERIYPV-SQTNTATGRISFREPNIQNVPKDFE 2107

Query: 729  LGQKI--------------------------------------------------RRAFI 738
            +   I                                                  R AF+
Sbjct: 2108 IEMPILVEESPPTQRQHKMFNAPRNRNRKSSVLPCEPKNLTERLTSKKIPFAVSMRHAFV 2167

Query: 739  SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
              P   +++ADYSQ+ELRILAH+     L Q   +  D+ R +AAE   +  E V   +R
Sbjct: 2168 PFPGGLILAADYSQLELRILAHLCCDRRLLQALNDGADVFRSIAAEWKMMAPEAVGNDLR 2227

Query: 799  RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
            + AK I + +IYGI    L  Q+ +   +A+ YI  +  R+PGI +++ +T     Q+G+
Sbjct: 2228 QQAKQICYGMIYGIGAKSLGEQMGVDEKDASYYIDSFKSRYPGIQKFLRETVKKCNQDGF 2287

Query: 859  VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
            V+TI GRR +   I       +   ER A+N  +QGSAADI + A +++ K LE    A 
Sbjct: 2288 VQTIMGRRRYLPTIRESNPYKKAQAERQAVNTVVQGSAADIVKTATVNIQKQLEALPSAV 2347

Query: 919  K------------------------------MLLQIHDELVFEVPEEEITTASQIIVHSM 948
            K                               +LQ+HDEL++EV E+ +   +QI+ H M
Sbjct: 2348 KSFEHLCSSTQNKWSGMAEKRQIMYPKHGGFFILQLHDELLYEVAEDSMIQVAQIVKHEM 2407

Query: 949  EKACLPKINLRVPLKVNIKVSNNWQE 974
            E A    + L V L V +KV ++W +
Sbjct: 2408 EHA----VKLSVKLSVKVKVGSSWGD 2429


>gi|297285105|ref|XP_001111254.2| PREDICTED: DNA polymerase theta isoform 2 [Macaca mulatta]
          Length = 2672

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 294/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + +L+     E    
Sbjct: 1983 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRIWHLQSCLRKESDKE 2041

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 2042 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 2100

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 2101 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 2160

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 2161 PSQYCLALLELNGIGFSTAECEGQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 2220

Query: 635  TKLKFPS----------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P                       G K + G+  +T++D+       +P+   IL
Sbjct: 2221 LELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 2280

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 2281 EWRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 2339

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2340 IKMPTLVGESPPSQAIGKGLLPMGRGKSKKGCSLNPGRQAQMEERAADRGMPFSISMRHA 2399

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 2400 FVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2459

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2460 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMRETVKNCKRD 2519

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2520 GFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFHS 2579

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2580 TFKSHGHREGMLQSDRTGLLRKRKLQGMFCPVRGGFFILQLHDELLYEVAEEDVVQVAQI 2639

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2640 VKNEMESA----VKLSVKLKVKVKIGASWGE 2666


>gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens]
          Length = 1154

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/690 (24%), Positives = 291/690 (42%), Gaps = 130/690 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 467  VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 525

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +  +    
Sbjct: 526  CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFFPHELP- 584

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 585  LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 644

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 645  PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 704

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 705  LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 764

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 765  EWRRITNAITKVVFPLQREKCLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 823

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 824  IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 883

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 884  FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 943

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 944  LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 1003

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 1004 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 1063

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 1064 TFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 1123

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            + + ME A    + L V LKV +K+  +W 
Sbjct: 1124 VKNEMESA----VKLSVKLKVKVKIGASWG 1149


>gi|289178750|gb|ADC85996.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 672

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/675 (21%), Positives = 269/675 (39%), Gaps = 49/675 (7%)

Query: 4   ENHLFLVDGSSFIYRAFY-ATPL-LSRKHDGLPVNAIAGFCNMLWKLLQNS---RKESIA 58
              L ++DG S  +RAFY A+   L ++  G              +LL ++    +    
Sbjct: 19  RGTLLVIDGHSLAFRAFYRASGEFLGQRRSGHQCG---------LRLLHDAFAGHRIEKP 69

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
               V FD    TFRN++   YK  R   PE L+ Q+PL++   +AFG+  +  QG+E D
Sbjct: 70  DLLGVAFDVKGGTFRNKMLTQYKGTREAAPEELISQIPLIQDMLEAFGVTYVTKQGYEGD 129

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEHVIKKWGI 174
           D+IAT   + E   +   ++S D+D  QL+     +    Y   + + +  + V  K+ +
Sbjct: 130 DVIATLATMGEHADYRTYVLSGDRDAFQLIDDDITVLYPGYHFKELKAMTPQAVEDKYHV 189

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +   L AL G++ DNIPG+PG+G   AA  + +YG L+ ++ +A  IK KK  + + 
Sbjct: 190 TPRQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDGVIEHADEIKGKK-GDALR 248

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYD 293
           E  E  RL+RK+  L  D+ + + +  L     +  +       L F  ++ +++  T++
Sbjct: 249 ESIEQIRLNRKVNALVRDLDLGVDIADLTFGKVDPAKAEELFNQLNFGARIRSKLLKTFN 308

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                 +PV    +  E      E +     T +     S+  Q   ++    P  L   
Sbjct: 309 AGDPG-QPVAKKASDAERFEFEGEFDDGSFDTPE-----SVRVQEPVVDEIDAPASLEAW 362

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             Q        + S T +    +     Q+                        A+  S 
Sbjct: 363 AQQHCPIASGKSISSTTLDVVGEYDAQSQQCVE---------------------AVEGSW 401

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                 +     +    L++     +   +   ++    L++  +        H  K   
Sbjct: 402 SLFASGSPKPGRSSISGLALMADGHAVVVDPHDEQYHMALQRILDTYAATLSVHGYKEHL 461

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
            +L    + +     D  L  Y++D       +   A  +L    +E+ ++ + ++ I  
Sbjct: 462 HMLGAVNLRLPMVLFDTNLAGYLIDPDFQGGSLQDCADHFLHRHAEEVTETEQGTLDIGM 521

Query: 533 ISD-SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             + ++     + N+ ++  L   L  +L       +   ++ P    +  ME TG  +D
Sbjct: 522 DDERAERDRKVVRNAAIVSLLARTLARQLEQRCQYSLLRDIELPTSVALFHMEHTGASVD 581

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +  L ++    +     +E+  Y+ +G + NL SPKQLG +LF ++      KTK G + 
Sbjct: 582 RARLDELLEMFTDESNRMEQICYEAAGHEVNLQSPKQLGVVLFEEMGLNPTKKTKRGSYS 641

Query: 652 TTAQDLEQINCGDNP 666
           T  + L  +      
Sbjct: 642 TNRKALTTLYATSEE 656


>gi|119879523|ref|XP_615375.3| PREDICTED: DNA polymerase theta [Bos taurus]
 gi|297470916|ref|XP_002684835.1| PREDICTED: polymerase (DNA directed), theta-like [Bos taurus]
 gi|296491393|gb|DAA33456.1| polymerase (DNA directed), theta-like [Bos taurus]
          Length = 2593

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/691 (24%), Positives = 290/691 (41%), Gaps = 128/691 (18%)

Query: 406  PIAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF----EN 459
             + +A+     KD   F  + E    ++S      S   +   K+ L +L+  F    + 
Sbjct: 1903 LVGLAVCW-GGKDAYYFSLQKEQKHSEISASLIPPSLDPSLTVKDRLRHLQSCFHKESDK 1961

Query: 460  EHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR- 517
            E  + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +   
Sbjct: 1962 ERSVIIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSKEPTLHSIVSHFLPHELP 2021

Query: 518  --KEI-LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              +EI       S+ ++  +    +  A   S +I      L   L  E L  V+ +++ 
Sbjct: 2022 LLEEIETGQGIQSLGLNVSTTHSGRYRASVESILIFNSMNQLNSLLKKENLQDVFYKVEM 2081

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 2082 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIEMQAYQLAGHSFSFTSSDDIAEVLF 2141

Query: 635  TKLKFPS----------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P                       G K + G+  +T++ +       +P+   IL
Sbjct: 2142 LELKLPPNGEGKNQGIKKTLGSTRRGNDNGRKLRLGKQFSTSKGVLNKLRALHPLPGLIL 2201

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+  +EPN+QN+P   +
Sbjct: 2202 EWRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFIEPNIQNVPRDFE 2260

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2261 IKMPAVVEESPPSQALGKGLLPMGRGGRKKDCAMNAGRQTKVEERASDRGMPFSVSMRHA 2320

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+      +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 2321 FVPFTGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDN 2380

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI  ++ +T    +++
Sbjct: 2381 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGISHFMRETVKNCKRD 2440

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE---- 912
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K LE    
Sbjct: 2441 GFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTRVQGSAADIVKIATVNIQKQLETFHS 2500

Query: 913  -------DHKL----------------------ATKMLLQIHDELVFEVPEEEITTASQI 943
                      L                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2501 TFKSHGHREGLLQSERTGLLPKKKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQI 2560

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    I L V L+V +++  +W E
Sbjct: 2561 VKNEMESA----IKLSVKLRVKVRIGASWGE 2587


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/662 (25%), Positives = 301/662 (45%), Gaps = 88/662 (13%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  +   + + Q V  L+     +    T  +D ++   + ++ +            
Sbjct: 115 PANYRLVQTEEQLDQLVTDLQQEDEIAVDTETTGLDVYNDVIVGLSFTL-------PKAD 167

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             ++I ++   +    G+    + +L+ LK    + +  KI HN KYD  +L R+G+ +R
Sbjct: 168 YHVYIPVAHKVA----GQQLSRRAVLTALKPILTDVNIGKILHNSKYDIHMLIRHGLRLR 223

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKW--------LSYTRKEILKSRKSSIPIDKISD 535
           G   D M+   VL+    +  + ++A K+         SYT +E+           +I  
Sbjct: 224 GIKHDTMIAMAVLNENEPTLALKNLATKYGKYFGFEDKSYTYEELFGK----TSFAEIPL 279

Query: 536 SQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                +A +++++  +L+   R  L   E L  +Y+ L+ P+IDV   ME  G  ID D 
Sbjct: 280 DAALVYAAKDTHLTYELYKWQRQHLNQKESLRLIYDELENPLIDVCVDMEQAGFLIDMDF 339

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
             +  AE+   +  LE N+ +  G+  N +SP QL  +L+ KLK P        +     
Sbjct: 340 AMEYKAELKGEIAGLEANLTEHFGD-INFNSPLQLAAVLYDKLKLPVIK--GKERSTDVK 396

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
              +  +   +  I  +L++R+L+K+  TY ++LP  I K    +H  ++  +T+TGR A
Sbjct: 397 TLKKLRDETKHEGIDVLLKYRELTKLLGTYVEALPQLIKKDGL-LHGSFNQVATVTGRFA 455

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S EPNLQN+P +       RR  ++P    ++  D+SQIE R+LAH++    L + +   
Sbjct: 456 SREPNLQNLPPRA------RRLIVAPEDSLILGVDFSQIEPRVLAHMSGDPHLQEPYLKG 509

Query: 775 LDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
            D++  +A+ +F V+ E+     + R+  K    +++YG S + LA QL I   EA  +I
Sbjct: 510 QDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMYGTSMWTLADQLGITVEEANQFI 569

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP----------------- 875
           + +F  +P ++ +I  T  F +QN YVET++GR+  +                       
Sbjct: 570 EDFFATYPDVYAFICATHEFAKQNEYVETLYGRKRRFPGHREKAIVYDKLATEICEILGT 629

Query: 876 ------------------KSSIRNIN------ERAAINAPIQGSAADITRRAMISVHKSL 911
                             +   R +        R A+NA IQG+AADI +RA+I+++   
Sbjct: 630 KAVPYDYWQYKKELPVILRRQFRAVKGEVERVRRMAVNARIQGTAADIMKRALINLYNDG 689

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
                  K++  +HDE +  V +       + I   M ++     NL VP++V+ ++S  
Sbjct: 690 R------KIIGTVHDEALLIVNKNITLAEVEKIEACMIRSA----NLNVPIRVDTELSTR 739

Query: 972 WQ 973
           W 
Sbjct: 740 WG 741


>gi|297670244|ref|XP_002813286.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Pongo
            abelii]
          Length = 2728

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 172/692 (24%), Positives = 294/692 (42%), Gaps = 131/692 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 2038 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDQE 2096

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 2097 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 2155

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 2156 LLEGMETSQGIQSLGLNVGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 2215

Query: 575  PMIDVVSQMEITGIQIDQDLL-KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P    +S +E+ GI        +     +   L ++E   Y L+G  F+ +S   + ++L
Sbjct: 2216 PSQYCLSLLELNGIGFSTAECYESQKHIMQAKLEAIETQAYQLAGHSFSFTSSDDIAEVL 2275

Query: 634  FTKLKFPS----------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            F +LK P                       G K + G+  +T++D+       +P+   I
Sbjct: 2276 FLELKLPPNGEMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLI 2335

Query: 672  LEWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            LEWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   
Sbjct: 2336 LEWRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDF 2394

Query: 728  DLGQK----------------------------------------------------IRR 735
            ++                                                       +R 
Sbjct: 2395 EIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGCSLNPRCQAQMEERAADRGMPFSISMRH 2454

Query: 736  AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            AF+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V  
Sbjct: 2455 AFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGD 2514

Query: 796  QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    ++
Sbjct: 2515 DLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKR 2574

Query: 856  NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL---- 911
            +G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L    
Sbjct: 2575 DGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFH 2634

Query: 912  ---EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQ 942
               + H     M                          +LQ+HDEL++EV EE++   +Q
Sbjct: 2635 STFKSHGHREGMLQSDRTGLSQKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQ 2694

Query: 943  IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            I+ + ME A    + L V LKV +K+  +W E
Sbjct: 2695 IVKNEMESA----VKLSVKLKVKVKIGASWGE 2722


>gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 836

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/429 (33%), Positives = 233/429 (54%), Gaps = 13/429 (3%)

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
             LW  +R   + E +  +  R+D P+  V+  ME  GI +D + L+ +   + + L +L
Sbjct: 416 WTLWDQIRSDPLWEGVRELVTRVDHPLSAVLVDMEREGIGLDVEGLRGLRERLERALGAL 475

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI-- 667
           EE I   +G + NL SPKQ+  +LF +L  P   +TKTG   T    LE+++    P+  
Sbjct: 476 EEGIAREAGAQVNLQSPKQVAWLLFERLGLPPVKRTKTG-LSTDVGVLEELSRLPEPLGR 534

Query: 668 -IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
               ILE R++SK+ + + +         +  + + +    T TGRL+S +PN+QN+P  
Sbjct: 535 VPSMILEHREISKLITAFVNPFLEQ--GSSGVIRSTFDQTGTGTGRLSSRDPNVQNLPQF 592

Query: 727 TDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
                + RR  +        +SADYSQIELR+LAH++    L + FE   D+H   A+ I
Sbjct: 593 GHWAVEFRRCLVPVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVHARTASWI 652

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           +GV+ + VSP+ RR AK +NF ++YG+    LA ++ + RSEAA+ ++RYF   PG+ E+
Sbjct: 653 YGVDPQAVSPEQRRFAKVVNFGLLYGMGAHGLAQRMGVSRSEAAEVMERYFSALPGVREF 712

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             +     +  GY  T+ GR     E+++ +       +R AIN PIQGSAADI R+AM+
Sbjct: 713 TRRMVEQAKARGYAATLMGRVRPLSEVSTVEGRGAGAIDRVAINTPIQGSAADIARKAMV 772

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            +H++L       +M+LQ+HD +V  VPE   +  ++++   ME A     +L VPL V 
Sbjct: 773 ELHRAL--AGGDCRMVLQVHDSIVCSVPEGMASRVAELMREVMEGAA----SLSVPLVVE 826

Query: 966 IKVSNNWQE 974
           +K      +
Sbjct: 827 VKTGGTLGD 835



 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 112/301 (37%), Positives = 157/301 (52%), Gaps = 15/301 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +   LVDG    +RAFYA P LS   DG PVNA+ GF NML+K+L++ R     + +A+ 
Sbjct: 3   DRFLLVDGHGLAFRAFYALPALS-APDGTPVNAVLGFLNMLYKVLEDQR----PTGWAIF 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P    R E+   YKA R   P+    QLP++    +A G P    +G EADD+IA  
Sbjct: 58  FDPPGPVIRREVLESYKAGRRPTPQEFKVQLPIIIDLLEALGHPVHVREGQEADDVIAAT 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
                  G  V I+S DKDL+Q++SP+  +   VK        D E  ++++  PP  M 
Sbjct: 118 AVNLSGSG-EVVILSADKDLLQVISPSVKVCRPVKGVSEFRVYDQEAFLEEYRFPPALMA 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              ALTGDS+DNIPG+PGIG K A  L+   G LE+I     R+   K R+ + E  E A
Sbjct: 177 DYLALTGDSVDNIPGVPGIGDKGARELVSSLGPLESIYEALDRLSPAK-RKRLEEGRELA 235

Query: 241 RLSRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
            LSR+LV+    VP   + +  L+  +    R +  L+ L   +LI R+        A +
Sbjct: 236 FLSRQLVLP---VPTESLDVRDLVPREAQRGRALRILEGLAMRQLIQRLGLDGADRGAGV 292

Query: 300 E 300
           E
Sbjct: 293 E 293


>gi|256112628|ref|ZP_05453549.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|265994069|ref|ZP_06106626.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765050|gb|EEZ10971.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 281

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 174/281 (61%), Positives = 226/281 (80%), Gaps = 3/281 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR EIYPDYKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IATY  +AEK G  VTIIS+DKDLMQLV+P+  +YD++K+++I I  VI+KWG+PPE
Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L  AS IKQ KRRENIL +A
Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           +  +++R+LV L+TDVP+ I L+ L+LE  NGP+LI FLKA
Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKA 281


>gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio]
          Length = 2593

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/680 (24%), Positives = 297/680 (43%), Gaps = 114/680 (16%)

Query: 403  HSKPIAIAISTLDQKDDTSF---KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
            +   + I IS      D  F   + E +  D+S   +          +E L  ++   + 
Sbjct: 1912 YEDLVVIGISVSWGAKDAYFVSLQQELVDTDISASLAPPPLDDTLTVEERLKQIQSCLQK 1971

Query: 460  EHFLKIGHN-IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG---RSSHDI-ASIAQKWL 513
            +  + + ++ I   K++L    +++RG FED  +  ++LDS    R+ H++  S A + L
Sbjct: 1972 DSSVTVTYDFIHLYKILLLACELAVRGTFEDPKIACWLLDSSSKERTLHNMVTSFATEDL 2031

Query: 514  SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
                         S+ I   +    +  A   S ++ ++   L   L  +  L V+++++
Sbjct: 2032 PMLEGISAGQGVQSLGIYGEASQPGRYRAAIESVLVFRVMTQLNCLLEKDGFLDVFKKVE 2091

Query: 574  KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
             P    ++ +E+ GI       +     +   L +LE   Y L+G  F+L+SP+ + ++L
Sbjct: 2092 MPTQYCLALLELNGIGFSIAECEAQKHVMQAKLSALESQAYQLAGHSFSLTSPEDVAEVL 2151

Query: 634  FTKLKFPS-------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
            F +LK P                    GA+ K  +  +T +D+ +     +P+   ILEW
Sbjct: 2152 FLELKLPPNGDLNGLKNKKTLGYTRRAGARIKLSKQFSTTKDVLEKLKPLHPLPGVILEW 2211

Query: 675  RQLSKIKSTYADSLPN----HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
            R+++   +     L      H + +  R+H   S + T TGR++  EPN+QN+P   ++ 
Sbjct: 2212 RRITNALTKVVFPLQREKKWHSHLKMDRIHPI-SQSHTATGRVSFTEPNIQNVPKDFEIQ 2270

Query: 731  QK----------------------------------------------------IRRAFI 738
                                                                  +R AF+
Sbjct: 2271 MPTLIEESQTSQNGGSKMWYISASCKRTKINRLLAPLLKVSDKSPDKGMQFSVSMRHAFV 2330

Query: 739  SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
                  +++ DYSQ+ELRILAH+++   L  V  +  D+ + +AAE   V+   V   MR
Sbjct: 2331 PFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSIAAEWKMVDPASVDDNMR 2390

Query: 799  RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
            + AK I + IIYG+    L  Q+ I  ++AA YI+ +  R+ GI  ++ +T     +NGY
Sbjct: 2391 QQAKQICYGIIYGMGAKSLGEQMGIEENDAACYIETFKSRYNGIQNFLRETVQKCGKNGY 2450

Query: 859  VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH---- 914
            V+T+ GR+     I      I++  ER A+N  +QGSAADI + A I++ + +E+     
Sbjct: 2451 VKTLLGRKRFLPGIKDSNVYIKSHAERQAVNTTVQGSAADIVKLATINIQRRIEEAFPGV 2510

Query: 915  ---------KLATK------------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
                     +L  +             +LQ+HDEL++EV EE++   +QI+   ME    
Sbjct: 2511 PTSHQHPSIRLGGRHRNQFRPLRGGYFILQLHDELIYEVAEEDVIQVAQIVKREMESV-- 2568

Query: 954  PKINLRVPLKVNIKVSNNWQ 973
              + L V L+V +KV  +W 
Sbjct: 2569 --VKLYVKLRVKVKVGPSWG 2586


>gi|73951787|ref|XP_545922.2| PREDICTED: similar to polymerase (DNA directed) nu [Canis
           familiaris]
          Length = 947

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/601 (26%), Positives = 292/601 (48%), Gaps = 46/601 (7%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + +ST D   +  F +   +I L    S     +     +     K  F+      I  N
Sbjct: 263 LDVSTSDGVLEEGFTLRDQYIYLKTQHSSTGDHEQEAYNQFAR--KVLFQTLKCPVICFN 320

Query: 469 IK-YDKLVLHRYG--------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
            K + + VL  +G        +   G  D  + ++++D G ++     +  K+L     E
Sbjct: 321 AKDFVRTVLQIFGNEGSWKHVVHFVGL-DPRIAAWLIDPGEAATSFEDLVAKFL-----E 374

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
              S K +      S + V ++   N  ++ +L + L  +L V  L  ++  L+ P+I +
Sbjct: 375 SSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKVYGLWQLFCTLELPLIPI 434

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           ++ ME   I+++++ +++ SA +   L  LE+  + ++GE+F ++S  QL +ILF KLK 
Sbjct: 435 LAVMESHSIRVNREEMERTSALLGSRLKELEQEAHFVAGEQFLITSNNQLQEILFGKLKL 494

Query: 640 ------PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
                  +  +T   +  +T++ +       +P+ K ILE+R++ K KS + D L   + 
Sbjct: 495 HLMSPMETLPRTGLQRLPSTSEAVLNALQDLHPLPKIILEYRRVHKTKSAFVDGLLAFVR 554

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK---------------TDLGQKIRRAFI 738
           K +  + + ++   T+TGRL++  PN+Q I                  T L    R  F+
Sbjct: 555 KGS--ISSMWNQTGTVTGRLSARHPNIQGISKHPIKITKPQNFKGTEGTMLTISPRSMFV 612

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQ 796
           +P +   ++AD+SQIELRILAH++    L ++F  S   D+   + ++   +  E V+  
Sbjct: 613 APESHTFLAADFSQIELRILAHLSGDPELLKLFRESGRDDVFSTLTSQWKDIPPECVTYA 672

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            R   K + +S++YG    RLA  L +   EAA +++ +  ++  I ++++ T     Q 
Sbjct: 673 DREQTKKVVYSVVYGAGKERLAACLGVTVQEAAQFLESFLQKYKKIKDFVQTTIAQCHQT 732

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK- 915
           GYV +I GRR     ++     +R   ER A+N  +QGSAAD+ + AMI + +++     
Sbjct: 733 GYVASIMGRRRPLPRVHDQDQQLRAQAERQAVNFVVQGSAADLCKMAMIRIFRAVATSPT 792

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIKVSNNW 972
           L  +++ QIHDEL+FEV + +I   + ++  +ME         + L+VPLKV++    +W
Sbjct: 793 LTARLVAQIHDELLFEVEDSQIPEFAALVRGTMESLQYVRALGLQLQVPLKVSLSAGPSW 852

Query: 973 Q 973
            
Sbjct: 853 G 853


>gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus]
          Length = 900

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/599 (27%), Positives = 294/599 (49%), Gaps = 47/599 (7%)

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           +   L++    S +   I  +LS   SQ+    +   +++L  + K         I  N 
Sbjct: 267 SYCVLEEGFTPSDQFIYIKTELSCIWSQEQEAHSQFARDVLFQILKC----KCPVICFNA 322

Query: 470 K-YDKLVLHRYGIS-----MRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           K + + VL  +G       +  F   D  + ++++D   ++     +  K+L     E  
Sbjct: 323 KDFVRTVLQFFGDDGSWKHVADFVGLDPRIAAWLIDPSDAAPSFEDLVAKYL-----ENS 377

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            + K S      S + V ++   N  ++ +L + L  +L +  L  ++  L+ P+I +++
Sbjct: 378 ITVKVSSTYGNSSRNIVNQNVCANLRILYRLTMGLCSQLKIYGLWQLFCTLELPLIPILA 437

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-- 639
            ME   IQ+++D +++ SA +   L  LE+  + ++GE+F ++S  QL +ILF KLK   
Sbjct: 438 VMESHNIQVNKDEMERTSAVLGSRLKELEQEAHFVAGEQFLITSNNQLREILFGKLKLHL 497

Query: 640 ----PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
                +  KT      +T++ +  +    +P+ K ILE+RQ+ KIKST+ D L   + K 
Sbjct: 498 LRPRETLPKTGLQGHLSTSEAMLNVLQNFHPLPKIILEYRQVHKIKSTFVDGLLACMKKG 557

Query: 696 TQRVHTFYSLASTMTGRLASLEPNL-------------QNIPIKTDLGQKIRR--AFISP 740
           +  + + ++   T+TGRL++  PN+             QN   K D    I     F+S 
Sbjct: 558 S--ISSTWNQTGTVTGRLSAKRPNIQGISKHPIQITKPQNFKGKEDDILTISPRTMFVSS 615

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMR 798
                ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   +  E V+   R
Sbjct: 616 EGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPSECVTHVER 675

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
              K + +S++YG    RLA  L +   EAA +++ +  ++  I ++ + T     Q GY
Sbjct: 676 EQTKKVVYSVVYGAGKERLAACLGVTVQEAARFLE-FLQKYKKIKDFAQATIARCHQTGY 734

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LA 917
           V +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++     L 
Sbjct: 735 VASIMGRRRPLPRIRAQDQQLRAQAERQAVNFVVQGSAADLCKMAMIHIFAAVATSPTLT 794

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSME---KACLPKINLRVPLKVNIKVSNNWQ 973
            +++ QIHDEL+FEV + ++   S ++  +ME        ++ L+VPLKV++    +W 
Sbjct: 795 ARLVAQIHDELLFEVEDSQVPEFSALVRGTMESLQHVQALELQLQVPLKVSLSAGRSWG 853


>gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 452

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/451 (37%), Positives = 261/451 (57%), Gaps = 16/451 (3%)

Query: 141 DKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIG 200
           DKDLMQLV+    +YD++K+++I I  V++KWG+PPEKM+ LQA+TGDS+DN+PGIPGIG
Sbjct: 1   DKDLMQLVTANVHMYDSMKDKQIGIPDVVEKWGVPPEKMIDLQAMTGDSVDNVPGIPGIG 60

Query: 201 YKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
            KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   E A+LSR+LV LRTDVP+ + L+
Sbjct: 61  PKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANIEMAKLSRELVRLRTDVPLDLDLD 120

Query: 261 HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGI----AI 316
            L+LE  NGP+LI FLK +EFT L  RVA   DCDA+ IEP V+ I   +        A 
Sbjct: 121 ALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDASAIEPAVVRIEWGDAAHGPDLDAA 180

Query: 317 ETEIDRDTTIKTSQFSSLSDQTSK--INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
           E           S  S      +K  +    +P  L   R +  +  P ++ +Y  I + 
Sbjct: 181 EPAPVAGGVPDVSGPSVPVPPRAKAGVEGAFSPADLAKARAEAFATLPFDHSTYVTIRDL 240

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ-KDDTSFKVETIFIDLSV 433
             + +W+      G  +F   T ++DA  ++ +  +++  D   D T  K+   ++ L+ 
Sbjct: 241 ATLDRWIADARDTGLVAFDTETTSLDAMQAELVGFSMAIADNVADPTGTKIRAAYVPLAH 300

Query: 434 H------TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487
                              ++ L  LK   E+   LK+  N+KYD L++ RYGI  + F+
Sbjct: 301 KNGVGDLLGGGLAENQVPMRDALPRLKALLEDAAVLKVAQNLKYDYLLMKRYGIETKSFD 360

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           D ML+SYVLD+G  +H +  +++K+L +     K++  S ++++  D +   +   +A E
Sbjct: 361 DTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRATHYAAE 420

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
           +++V L+LWL+L+P+L    L  VYERL++P
Sbjct: 421 DADVTLRLWLVLKPRLAAAGLTSVYERLERP 451


>gi|291400573|ref|XP_002716687.1| PREDICTED: DNA polymerase theta isoform 2 [Oryctolagus cuniculus]
          Length = 2306

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/690 (24%), Positives = 294/690 (42%), Gaps = 128/690 (18%)

Query: 407  IAIAISTLDQKDDT-SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN----EH 461
            + +A+    +     S + E    ++S      S       K+ + +L+   +     E 
Sbjct: 1617 VGLAVCWGGRDAYYCSLQKEQQHSEISASLVPPSLDPRLTMKDRMWHLQSCLQKASDKER 1676

Query: 462  FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
             + I   I+  K++L   G+S+ + FED  +  ++LD       + SI   +L      +
Sbjct: 1677 SVIIYDFIRSYKILLLSCGVSLEQSFEDPKVACWLLDPDSKEPTLHSIVTSFLP-CELPL 1735

Query: 521  LKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
            L+  ++   I  +  +   EH     A   S +I      L   L  EKL  ++ +++ P
Sbjct: 1736 LEEMETGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNALLQKEKLQDIFHKVEMP 1795

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
                ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF 
Sbjct: 1796 SQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFL 1855

Query: 636  KLKFPS----------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
            +LK P                       G K K G+  +T++D+       +P+   ILE
Sbjct: 1856 ELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLKALHPLPGLILE 1915

Query: 674  WRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            WR+++   +     L     +N     +R++   S + T TGR+  +EPN+QN+P   ++
Sbjct: 1916 WRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFIEPNIQNVPRDFEI 1974

Query: 730  GQK----------------------------------------------------IRRAF 737
                                                                   +R AF
Sbjct: 1975 KMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERASDRGIPFSVSMRHAF 2034

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            +  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   +  E V   +
Sbjct: 2035 VPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIAAEWRMMEPESVGDDL 2094

Query: 798  RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
            R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++++T    R++G
Sbjct: 2095 RQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINHFMKETVKNCRRDG 2154

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE----- 912
            +V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K LE     
Sbjct: 2155 FVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFHST 2214

Query: 913  --------------------DHKL--------ATKMLLQIHDELVFEVPEEEITTASQII 944
                                  +L            +LQ+HDEL++EV EE++   +QI+
Sbjct: 2215 FKSHGHREGVLQSDKTGLFPKRRLPGVFCPVRGGFFILQLHDELLYEVAEEDVVQVAQIV 2274

Query: 945  VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + ME A    I L V LKV +K+  +W E
Sbjct: 2275 KNEMENA----IKLSVKLKVKVKIGASWGE 2300


>gi|291400571|ref|XP_002716686.1| PREDICTED: DNA polymerase theta isoform 1 [Oryctolagus cuniculus]
          Length = 2585

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/690 (24%), Positives = 294/690 (42%), Gaps = 128/690 (18%)

Query: 407  IAIAISTLDQKDDT-SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN----EH 461
            + +A+    +     S + E    ++S      S       K+ + +L+   +     E 
Sbjct: 1896 VGLAVCWGGRDAYYCSLQKEQQHSEISASLVPPSLDPRLTMKDRMWHLQSCLQKASDKER 1955

Query: 462  FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
             + I   I+  K++L   G+S+ + FED  +  ++LD       + SI   +L      +
Sbjct: 1956 SVIIYDFIRSYKILLLSCGVSLEQSFEDPKVACWLLDPDSKEPTLHSIVTSFLP-CELPL 2014

Query: 521  LKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
            L+  ++   I  +  +   EH     A   S +I      L   L  EKL  ++ +++ P
Sbjct: 2015 LEEMETGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNALLQKEKLQDIFHKVEMP 2074

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
                ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF 
Sbjct: 2075 SQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFL 2134

Query: 636  KLKFPS----------------------GAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
            +LK P                       G K K G+  +T++D+       +P+   ILE
Sbjct: 2135 ELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLKALHPLPGLILE 2194

Query: 674  WRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            WR+++   +     L     +N     +R++   S + T TGR+  +EPN+QN+P   ++
Sbjct: 2195 WRRITNAITKVVFPLQREKRLNPFLGMERIYPV-SQSHTATGRITFIEPNIQNVPRDFEI 2253

Query: 730  GQK----------------------------------------------------IRRAF 737
                                                                   +R AF
Sbjct: 2254 KMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERASDRGIPFSVSMRHAF 2313

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            +  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   +  E V   +
Sbjct: 2314 VPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIAAEWRMMEPESVGDDL 2373

Query: 798  RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
            R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++++T    R++G
Sbjct: 2374 RQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINHFMKETVKNCRRDG 2433

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE----- 912
            +V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K LE     
Sbjct: 2434 FVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFHST 2493

Query: 913  --------------------DHKL--------ATKMLLQIHDELVFEVPEEEITTASQII 944
                                  +L            +LQ+HDEL++EV EE++   +QI+
Sbjct: 2494 FKSHGHREGVLQSDKTGLFPKRRLPGVFCPVRGGFFILQLHDELLYEVAEEDVVQVAQIV 2553

Query: 945  VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + ME A    I L V LKV +K+  +W E
Sbjct: 2554 KNEMENA----IKLSVKLKVKVKIGASWGE 2579


>gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
 gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
          Length = 844

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/428 (33%), Positives = 239/428 (55%), Gaps = 13/428 (3%)

Query: 555 LLRPKLIVEKLLH----VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            L   L  E L      +   LD P+  V+++ME  GI +D+  L  +   +      LE
Sbjct: 421 ALLETLCEEPLWPSVAPLVRDLDLPLAPVLARMESRGIGVDEGALASLDVRLEGRSRELE 480

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI--- 667
             +   +GE+ NL SPKQ+  +LF +L  P   KTKTG + T    LE++    +P+   
Sbjct: 481 ALVRAEAGEEVNLQSPKQMAALLFERLGLPPLKKTKTG-FSTDVGVLEELAKLPDPLSRV 539

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            +++LE R+++K+++ +        ++    +++ +   +T TGRL+S +PN+QN+P+  
Sbjct: 540 PRHLLEHREVAKLRTGFVQPFLKQAHRDGGHIYSTFEQTATGTGRLSSRDPNVQNLPVFG 599

Query: 728 DLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
           +  +  RR  +   P  + +SADYSQIELR+LAH+     L Q FE   DIHR  A+ ++
Sbjct: 600 EWAEAFRRCLVPTSPKDRFLSADYSQIELRVLAHLCGEPRLVQAFEAGRDIHRETASWVY 659

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           GV  E+VS + RR AK +NF ++YG+S   LA ++ + R EAA  I RYF   P + EY+
Sbjct: 660 GVAAEEVSAEQRRFAKVVNFGLLYGMSAHGLAQRMGVGRPEAAQIIDRYFSVLPRVREYL 719

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           E+T    +  GY  ++FGR     E+++ +       +R A+N+PIQ +AADI + AM+ 
Sbjct: 720 EETVREAKARGYTVSLFGRVRPLGEVSTVEGRGGGALDRVAVNSPIQSTAADIAKVAMVD 779

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           + + L    L  +++LQ+HD LV +VP+E +  A+ ++   ME+A    + L VPL+   
Sbjct: 780 LERRLRGSGLPVRLVLQVHDSLVCQVPQEALEEAASLLRDVMERA----VTLSVPLETVT 835

Query: 967 KVSNNWQE 974
           K  ++  +
Sbjct: 836 KAGSSLAD 843



 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 146/298 (48%), Gaps = 19/298 (6%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            E    LVDG    +RAFYA P LS   DG PV+AI GF NML K+L+  R +     + 
Sbjct: 2   DEPRFLLVDGHGLAFRAFYALPELS-APDGTPVHAILGFLNMLQKVLEEQRPQG----WG 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    T R +IY DYK  R   PE    QLPL+    +A G      +G EADD+IA
Sbjct: 57  LFFDPKGETERKKIYGDYKLGRRPTPEGFKIQLPLLLELLEALGHRVHVREGVEADDLIA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           +      K G    ++S DKDL+Q++SP   +    K        D     +++G  P  
Sbjct: 117 STALSLGK-GREALVLSADKDLLQVLSPGVRVMRPQKGVSEFRLFDEALFREEYGFAPSA 175

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M    ALTGD++D+IPG+ GIG K A  L+  +G+LE I  +   +  K +R  + E  E
Sbjct: 176 MADYLALTGDAVDHIPGVAGIGDKGARALVSHHGSLEGIYAHLGEL-PKGQRGKLEEGRE 234

Query: 239 TARLSRKLVMLRTDVPIT---IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            A  SR LV     VP+    IP E LI    +  R  +    L   +L+ R+    +
Sbjct: 235 QAFASRALV-----VPLPTEAIPAEGLIPAPRDDERARTLCSRLGLKQLLKRLGLGQE 287


>gi|293571803|ref|ZP_06682819.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608057|gb|EFF37363.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 562

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/665 (25%), Positives = 283/665 (42%), Gaps = 116/665 (17%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K N L LVDG+S  +RAF+A        +  +GL  NAI  F  M   ++Q  +    
Sbjct: 1   MTK-NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K  F V ++S D+DL QL S    +  TVK     E    EHV +K+ 
Sbjct: 116 DDIIGTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E I               
Sbjct: 176 GLIPKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIY-------------- 221

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             E+ +  + S+                  + E+    +  +FL          ++AT  
Sbjct: 222 --EHIDEMKQSK------------------MKENLINDKEQAFLSK--------KLATI- 252

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
                   PV + I++ + +G  ++  +      K   F+    + + +  E     +  
Sbjct: 253 ----NTSAPVEVSIDSLKYEGKNLDKLVPF---YKEMDFNQFLSKLNIVEEEVKMDDILF 305

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E + +  +     D                        +  +     +    + + +A  
Sbjct: 306 EVVHEFKEEMFTTD-----------------------MALYVEMMGDNYHTEEIVGVAWG 342

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T         K   +  DLSV  +Q                  +  + + LK  ++ K  
Sbjct: 343 TE--------KKIYVTNDLSVFENQ--------------AFHSWITDPNRLKKVYDAKRT 380

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527
            + L+RY    +G + D++L +Y+LD+   S DI  IA  +    +        K  K  
Sbjct: 381 YVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKG 440

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +P ++        H       I  L   L  +L  +    ++ +++ P+  ++++MEI+G
Sbjct: 441 LPEEE---ELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISG 497

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           I++D   L+++  E S  L  +E+ IY+ +GE+FNL+SPKQLG ILF K+  P   K K 
Sbjct: 498 IKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPVIKKQKL 557

Query: 648 GQWKT 652
           G  + 
Sbjct: 558 GTPQP 562


>gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/546 (27%), Positives = 269/546 (49%), Gaps = 42/546 (7%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLS 514
             +  N K + + VL  YG       +  F   D  + ++++D   ++     +  K L 
Sbjct: 316 PVVCFNAKDFVRTVLQLYGEDDSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDLVAKHLE 375

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +      + K S    + S + + ++   N  ++  L + L  KL    L  ++  L+ 
Sbjct: 376 KSI-----TVKPSSTFREASRNTLSQNVCMNLKILYDLTMDLCSKLKAYGLWQLFCTLEL 430

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   I +D++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF
Sbjct: 431 PLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILF 490

Query: 635 TKLKF------PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK           +T      +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 491 GKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFIDGL 550

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ-------------NIPIKTDLGQKIRR 735
             ++ K +  + + ++   T+TGRL++  PN+Q             N   K +    I  
Sbjct: 551 LAYMKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISP 608

Query: 736 --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
              F+S      ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   + IE
Sbjct: 609 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 668

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + +S++YG    RLA  L +   EA  +++R+  ++  I ++ +    
Sbjct: 669 RVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIG 728

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
                GYV +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++
Sbjct: 729 QCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAV 788

Query: 912 EDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIK 967
                L  +++ QIHDEL+FEV + ++   + ++   ME        ++ L+VPLKVN+ 
Sbjct: 789 ATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLS 848

Query: 968 VSNNWQ 973
           V  +W 
Sbjct: 849 VGRSWG 854


>gi|255017642|ref|ZP_05289768.1| DNA polymerase I [Listeria monocytogenes FSL F2-515]
          Length = 316

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/316 (46%), Positives = 200/316 (63%), Gaps = 5/316 (1%)

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
             G + II  IL +RQL KI+STY + L    +K T +VHT ++   T TGRL+S++PNL
Sbjct: 4   LSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNL 63

Query: 721 QNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QNIPI+ + G+KIR+ F+   P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH 
Sbjct: 64  QNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHT 123

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             A ++F V  E+V   MRR AK +NF I+YGIS + L+  L I R EA D+I RYF  +
Sbjct: 124 KTAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSY 183

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N PIQGSAADI
Sbjct: 184 PAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADI 243

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            ++AMI + + L   KL  K+LLQ+HDEL+FE PE EI    +I+   ME A    + L 
Sbjct: 244 IKKAMILMSERLVSEKLKAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELS 299

Query: 960 VPLKVNIKVSNNWQEE 975
           VPLKV+    + W + 
Sbjct: 300 VPLKVDSAFGDTWYDA 315


>gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
          Length = 975

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/567 (27%), Positives = 283/567 (49%), Gaps = 42/567 (7%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIK-YDKLVLHRYGIS-----MRGFE--DIMLM 492
           G+    +   + L++    +    I  N K + +  L  +G       + GF   D  + 
Sbjct: 289 GQEAQHQLAENVLREVLRRKR-PVICFNAKDFVRTALQLFGDDGSWKCVAGFVGLDPRIA 347

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           ++++D   ++     +  K+L       + S          S   V +       V+ +L
Sbjct: 348 AWLIDPSDAAPSFEDLVAKYLGNPTTLTVNSM-----HGNSSRKTVNQTVRAKLRVLHRL 402

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            + L  +L V  L  ++  L+ P+I +++ ME   I+++++ ++++SA +   L  LE+ 
Sbjct: 403 TMHLCSQLQVCGLWQLFWTLELPLIPILAVMESHRIRVNKEEMERMSALLGSRLKELEQE 462

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTTAQDLEQINC--GDNP 666
            + ++GE+F ++S  QL +ILF KL+     P  A   TG  +  +    ++N     +P
Sbjct: 463 AHFVAGEQFLITSNHQLREILFGKLRLHLLRPQDASPATGLRRLPSTSGAELNALQDLHP 522

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           + + ILE+RQ+ KIKST+ D L   + K +  V + ++   T++GRL++  PN+Q I   
Sbjct: 523 LPRIILEYRQVHKIKSTFVDGLLACMKKGS--VSSTWNQTGTVSGRLSAKHPNIQGISKH 580

Query: 727 --------------TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                          +L    R AF+S      ++AD+SQIELRILAH++    L ++F+
Sbjct: 581 PIQITKPQSFKGEEDELSISPRTAFVSSEGYTFLAADFSQIELRILAHLSGDPELLKLFQ 640

Query: 773 NSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
            S   D+   + ++   V+ E+V+   R   K + ++++YG    RLA  L +P  EAA 
Sbjct: 641 ESERDDVFSTLTSQWKDVSPERVTHADREQTKKVVYAVVYGAGKERLAACLGVPVREAAR 700

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +++ +  ++  I ++ + T    +Q GYVE+I GRR     I +    +R   ER A N 
Sbjct: 701 FLESFLQKYKKIKDFTQATVARCQQTGYVESIMGRRRPLPRIRAHDPQLRAQAERQAANF 760

Query: 891 PIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            +QGSAAD+ + AMI +  ++     L  ++L QIHDEL+FEV + ++   + ++  +ME
Sbjct: 761 VVQGSAADLCKMAMIRIFTAMATSPTLTARLLAQIHDELLFEVEDSQVPEFTALVQGTME 820

Query: 950 ---KACLPKINLRVPLKVNIKVSNNWQ 973
                   ++ L+VPLKV++    +W 
Sbjct: 821 ALQHVPALELQLQVPLKVSLSAGRSWG 847


>gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
 gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
          Length = 340

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/345 (44%), Positives = 215/345 (62%), Gaps = 6/345 (1%)

Query: 633 LFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +F KLK      KTKTGQ+ T+ + LE +    +P+++ ILE R L K+  TY D+LP  
Sbjct: 1   MFDKLKIVEKAKKTKTGQYVTSEEVLESLR-HKHPVVEKILEHRGLKKLLGTYIDALPLL 59

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           IN RT RVHT ++   T TGRL+S  PNLQNIPI+ + G++IR+AFI        SADYS
Sbjct: 60  INPRTGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYS 119

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRI+AH+++   +   F ++ DIH   AA+I+ ++++ V   MRR AKT NF IIYG
Sbjct: 120 QIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYG 179

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           IS F LA ++ + R EA + I  YF  +PG+  Y++K+    ++ GYVETIF R+    +
Sbjct: 180 ISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPD 239

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           INS  + +R   ER AINAPIQGSAADI + AM  +++  +   +  KM+LQ+HDEL F 
Sbjct: 240 INSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFS 299

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           VP  E     +I++  MEKA      + VPLK +     NW E +
Sbjct: 300 VPVNEKERVEEIVIEEMEKA----YRMHVPLKADCGWGKNWLEAH 340


>gi|301762338|ref|XP_002916602.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Ailuropoda
           melanoleuca]
          Length = 1040

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/557 (27%), Positives = 276/557 (49%), Gaps = 54/557 (9%)

Query: 463 LKIGHNIK-YDKLVLHRYG--------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
             I  N K + + VL  +G        +   G  D  + ++++D G ++     +  K+L
Sbjct: 308 PVICFNAKDFVRTVLQFFGHDGSWKHVVHFVGL-DPRIAAWLIDPGDAAPSFEDLVAKYL 366

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
                E   S K +      S + V ++   N  ++ +L + L  +L V  L  ++  L+
Sbjct: 367 -----ESSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKVYGLWQLFCTLE 421

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
            P+I +++ ME   IQ+D++ +++ SA +   L  LE+  + ++GE+F ++S  QL ++L
Sbjct: 422 LPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVAGEQFLITSNNQLREVL 481

Query: 634 FTKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           F KLK P      +  +T   +  +T++ + +     +P+ K ILE+R++ K KS + D 
Sbjct: 482 FGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYRRVHKTKSAFVDG 541

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK---------------TDLGQK 732
           L   + K +  + + ++   T+TGRL++  PN+Q I                    L   
Sbjct: 542 LLACMRKGS--ISSTWNQTGTVTGRLSARHPNIQGISKHPIQITKPQNFKGVEGAMLTIS 599

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNI 790
            R  F++P     ++AD+SQIELRILAH++    L ++F+ S   D+   + ++  GV  
Sbjct: 600 PRSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKGVPP 659

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           E V+   R   K + +S +YG    RLA  L +   EAA +++ +  ++  + ++++ T 
Sbjct: 660 EHVTHADREQTKKVVYSAVYGAGKERLAACLGVTVQEAAWFLESFLQKYKKVKDFVQTTI 719

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
               Q GYV +I GRR     + +    +R   ER A+N  +QGSAAD+ + AMI V  +
Sbjct: 720 AQCHQTGYVASIMGRRRPLPRVRAQDQQLRAQAERQAVNFVVQGSAADLCKMAMIRVFAA 779

Query: 911 LEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK-----ACLPKINLR----- 959
           +     L  +++ QIHDEL+FEV + +I   + ++  +ME      A   +  L      
Sbjct: 780 VAASPTLTARLVAQIHDELLFEVDDSQIPELAALVRGTMESLRNVRALELQNRLTPREQD 839

Query: 960 ---VPLKVNIKVSNNWQ 973
              VPLKV++   ++W 
Sbjct: 840 PEVVPLKVSLSAGHSWG 856


>gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes]
          Length = 900

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/546 (28%), Positives = 278/546 (50%), Gaps = 42/546 (7%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLS 514
             I  N K + ++VL  +G       +  F   D  + ++++D   ++     + +K+  
Sbjct: 315 PVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY-- 372

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              K +  + K +      S + V ++  EN   + +L + L  KL    L  ++  L+ 
Sbjct: 373 -CEKSL--TVKVNSTYGNSSRNIVNQNVCENLKTLYRLTMDLCSKLKDYGLWQLFCTLEL 429

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   IQ++++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF
Sbjct: 430 PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLIMSNNQLREILF 489

Query: 635 TKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK        S  +T   ++ +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 490 GKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGL 549

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI-----PIKTDLGQKIRR-------- 735
              + K +  + + ++   T+TGRL++  PN+Q I      I T    K +         
Sbjct: 550 LACMKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISP 607

Query: 736 --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
              F+S      ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   V +E
Sbjct: 608 RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVE 667

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + ++++YG    RLA  L +P  EAA +++ +  ++  I ++      
Sbjct: 668 QVTHADREQTKKVVYAVVYGAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIA 727

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
              Q G V +I GRR     I++    +R   ER A+N  +QGSAAD+ + AMI V  ++
Sbjct: 728 QCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAV 787

Query: 912 -EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIK 967
              H L  +++ QIHDEL+FEV + +I   + ++  +ME        ++ L+VPLKV++ 
Sbjct: 788 AASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLS 847

Query: 968 VSNNWQ 973
              +W 
Sbjct: 848 AGRSWG 853


>gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
 gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
          Length = 640

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/652 (24%), Positives = 285/652 (43%), Gaps = 65/652 (9%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITD-----------TMDAFHSKPIAIAISTLDQ 416
           Y  +    +I+++   L+     +F   T             +DA  +    I+ S  + 
Sbjct: 3   YKCVYMLSEIKEY---LKNTVLFAFDFETSPRDKWRNDKSAALDAHKADITGISFSVSEG 59

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     I++ L   + +++  +      I  YLK  FE++  +K+ HN+ ++ + L
Sbjct: 60  --------TAIYVPLKHRSGRNAENQ----AAIWDYLKLLFESKDVIKVAHNLAFESMFL 107

Query: 477 HRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP------ 529
           +  GI + +   D +  S +  + +S  +  S+A   L      + K+  +         
Sbjct: 108 YARGIVLQKPCYDTIAASQL--TLKSKWEFRSLADSGLKTLAPALCKAEMTEFSTVTEGR 165

Query: 530 -IDKIS--DSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQME 584
             D+++  D +   +A  +S+  L+L+ +          K   + E ++ P    V  M+
Sbjct: 166 FFDELNPQDEKTVRYACADSDYTLRLYHVFNQWFDRFLPKHRTIVEEVESPTSVYVGIMK 225

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLS-SPKQLGDILFTKLKFPSG 642
             GI +D+  + +  AE ++ ++S+ + I  + G  +   + S       LF  L  P  
Sbjct: 226 YNGILVDKSAMLKKQAEAAEKIVSIRKEIAGIIGNVEIGANASTSAFKKYLFVDLGLPVM 285

Query: 643 AKTKTGQWKTTAQDL---EQINCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKR 695
             T   Q     + +   ++    + P    + + + E+R+  K+KSTY D     I++ 
Sbjct: 286 KTTAKHQEAADDETMILLKEWCATNRPELVRLFELVQEYRKWGKLKSTYIDGYLRFIDED 345

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T R+H       T TGR AS  PN+QN P K +    +R+  I+P  K L+S D+SQIEL
Sbjct: 346 TGRIHPDLMPLGTETGRFASRNPNMQNCPQKDNDPIGVRKFIIAPAGKVLLSLDFSQIEL 405

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS-------PQMRRHAKTINFSI 808
           R+ A   +   + + +    DIH    + I+ +  E+ +        + R  AK  NF +
Sbjct: 406 RVGAFYCRDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNFGV 465

Query: 809 IYGISPFRLATQLRI------PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            YG+ P  L   L+         +E    I+     +PG+ ++ ++ K     + Y ET 
Sbjct: 466 FYGLFPTGLQRTLKFKAGINPTLAECETIIQNLKSGYPGLAKWQDEVKKRAAVSCYSETW 525

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GRR +   I S     ++  ER A+N PIQG+AADI + A   +   L +  L  K +L
Sbjct: 526 LGRRRYLLGIRSSDWGKKSFAERCALNTPIQGTAADILKLACGRIISGLPER-LWLKPML 584

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           QIHDELVFE+PE+++  A   I   ME    P     VP+     V  N+ E
Sbjct: 585 QIHDELVFELPEDKVDEAVVFIKECMETQPFPAF--DVPIVAEASVGRNFGE 634


>gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu
          Length = 864

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/546 (27%), Positives = 269/546 (49%), Gaps = 42/546 (7%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLS 514
             +  N K + + VL  YG       +  F   D  + ++++D   ++     +  K L 
Sbjct: 314 PVVCFNAKDFVRTVLQLYGEDGSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDLVAKHLE 373

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +      + K S    + S + + ++   N  ++  L + L  KL    L  ++  L+ 
Sbjct: 374 KSI-----TVKPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLEL 428

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   I +D++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF
Sbjct: 429 PLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILF 488

Query: 635 TKLKF------PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK           +T      +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 489 GKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFIDGL 548

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ-------------NIPIKTDLGQKIRR 735
             ++ K +  + + ++   T+TGRL++  PN+Q             N   K +    I  
Sbjct: 549 LAYMKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISP 606

Query: 736 --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
              F+S      ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   + IE
Sbjct: 607 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 666

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + +S++YG    RLA  L +   EA  +++R+  ++  I ++ +    
Sbjct: 667 RVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIG 726

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
                GYV +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++
Sbjct: 727 QCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAV 786

Query: 912 EDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIK 967
                L  +++ QIHDEL+FEV + ++   + ++   ME        ++ L+VPLKVN+ 
Sbjct: 787 ATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLS 846

Query: 968 VSNNWQ 973
           V  +W 
Sbjct: 847 VGRSWG 852


>gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus]
 gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 149/546 (27%), Positives = 269/546 (49%), Gaps = 42/546 (7%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLS 514
             +  N K + + VL  YG       +  F   D  + ++++D   ++     +  K L 
Sbjct: 316 PVVCFNAKDFVRTVLQLYGEDGSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDLVAKHLE 375

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +      + K S    + S + + ++   N  ++  L + L  KL    L  ++  L+ 
Sbjct: 376 KSI-----TVKPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLEL 430

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   I +D++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF
Sbjct: 431 PLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILF 490

Query: 635 TKLKF------PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK           +T      +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 491 GKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFIDGL 550

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ-------------NIPIKTDLGQKIRR 735
             ++ K +  + + ++   T+TGRL++  PN+Q             N   K +    I  
Sbjct: 551 LAYMKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISP 608

Query: 736 --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
              F+S      ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   + IE
Sbjct: 609 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 668

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + +S++YG    RLA  L +   EA  +++R+  ++  I ++ +    
Sbjct: 669 RVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIG 728

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
                GYV +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++
Sbjct: 729 QCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAV 788

Query: 912 EDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIK 967
                L  +++ QIHDEL+FEV + ++   + ++   ME        ++ L+VPLKVN+ 
Sbjct: 789 ATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLS 848

Query: 968 VSNNWQ 973
           V  +W 
Sbjct: 849 VGRSWG 854


>gi|308522710|ref|NP_001184156.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis]
          Length = 2671

 Score =  369 bits (947), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 158/690 (22%), Positives = 287/690 (41%), Gaps = 129/690 (18%)

Query: 406  PIAIAISTLD--------QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
             + +A+            QK+     +        +  +     +    +  L  ++   
Sbjct: 1984 LVGLAVCWGGKDAYYISLQKEQDQADICPSLAPPPLDQTLSVKDRLWHIQSALQQIRPGG 2043

Query: 458  ENEHFLKIGHNI--KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
                   I ++   +Y  L+L    +S+ G F+D  +  ++LD G     + ++   +L 
Sbjct: 2044 SEPTI--IMYDCIEQYKALLLACR-VSLAGHFQDPKVACWLLDPGSKERTLHNMVTNFLP 2100

Query: 515  YTRKEILK----SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            Y    +          S+ +   SD   +  A   + V+      L   L  EKL   + 
Sbjct: 2101 YELPLLDGVGPGQGVQSLGLSPSSDQTGRYRAAIEAVVVFSTMNALGALLEKEKLQDAFH 2160

Query: 571  RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            R++ P    ++ +E+ G+    +  +     +   L  +E   Y L+G  F+L+S   L 
Sbjct: 2161 RVEMPTQYCLALLELNGMGFSTEECETQKHIMEAKLNEIEAVAYQLAGRSFSLTSHDDLA 2220

Query: 631  DILFTKLKFPS----------------------GAKTKTGQWKTTAQDLEQINCGDNPII 668
             +LF +LK P                       GA+ + G+  +TA+D+ +     +P+ 
Sbjct: 2221 QVLFLELKLPPNGDPKAQGNKKTLGYTRRAAASGARVRLGKQFSTAKDVLEKLKALHPLP 2280

Query: 669  KNILEWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
              ILEW++++   +     L     +N     +R++   S   T TGR++  EPN+QN+P
Sbjct: 2281 GLILEWKRITNALTKVVFPLQREKLLNPNLGMERIYPI-SQTHTATGRVSFTEPNIQNVP 2339

Query: 725  IKTDLGQK---------------------------------------------------I 733
               ++                                                      +
Sbjct: 2340 KDFEIEMPRLVGESPPSQAPGPSAYPYRNRGKKPQVNTPGPKVPVEQIPAERGVSFFVSM 2399

Query: 734  RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
            R AF+  P   +++A YSQ+ELRILAH+++   L QV  +  D+ + +AAE   ++ E V
Sbjct: 2400 RHAFVPFPGGLILAAAYSQLELRILAHLSRDRRLIQVLNSGSDVFKSIAAEWKMIDPEAV 2459

Query: 794  SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
            +  +R+ AK I + IIYG+    L  Q+ I  S+AA YI  +  R+ GI +++++T    
Sbjct: 2460 TDTVRQQAKQICYGIIYGMGAKSLGEQMGIEESDAACYIDTFKSRYTGIQKFLKETVRSC 2519

Query: 854  RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
             ++G+V+TI GRR +   I       ++  ER A+N  +QGSAADI + A +++ K LE+
Sbjct: 2520 TRDGFVQTILGRRRYLPAIKDSNPYAKSHAERQAVNTTVQGSAADIVKTATVNIQKRLEE 2579

Query: 914  ---------------------HKLATK--------MLLQIHDELVFEVPEEEITTASQII 944
                                  +L  +         +LQ+HDEL++E  +E+    +QII
Sbjct: 2580 TFPSVPKSHEHPVQAGGTGRAERLRHRPPPTRGAFFILQLHDELLYEAAQEDAIQVAQII 2639

Query: 945  VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               ME A      L V L+V +K+  +W +
Sbjct: 2640 KKEMENAM----KLSVKLRVKVKMGPSWGD 2665


>gi|196005441|ref|XP_002112587.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
 gi|190584628|gb|EDV24697.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
          Length = 1492

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 158/541 (29%), Positives = 273/541 (50%), Gaps = 44/541 (8%)

Query: 458  ENEHFLKIGHNIKYDKLVLHRY-GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            EN   +KI +N+K    +L R+  + ++G   D  +  ++LD         +I   +L+ 
Sbjct: 964  ENSSAIKIAYNLKEQYKILTRHLQVEIKGTSYDPKIGIWLLDQDAHEKTFHAIISNYLA- 1022

Query: 516  TRKEILK------SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
                +L       +  + I +   S +  +  A   S ++ +L  ++   L   +L  +Y
Sbjct: 1023 DEAALLDCVIGTCTDGNGIGLHYNSQTSGRRRACIESVLVHKLHSVVEAMLKERELYKLY 1082

Query: 570  ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
              ++ P I  +  +E+ GI    D  +Q    +   L  +EE  Y ++G  F L+SP  +
Sbjct: 1083 SEIEMPTIRTLCWLELDGIGFCMDECQQQIERLQYRLHYIEEMAYRIAGRSFQLTSPTDI 1142

Query: 630  GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
              +L+T+L               T +D+ Q     +P+   +LEWR+++   +     L 
Sbjct: 1143 AHVLYTELN--------------TCKDVLQKLSQIHPLPALVLEWRRINSALTKTLYPLK 1188

Query: 690  ---NHINK-RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI--SPPTK 743
                + +K +T RV+       T TGR++  +PNLQNIP   D+ + +R   I       
Sbjct: 1189 RYSKYCHKSKTYRVYPTC-QMHTATGRISISDPNLQNIPKDFDIAKMVRMRNIIGCTNDT 1247

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             L+SADYSQ+ELR++AH+++   L +V  +  D+ + +A+E   +  + VS + R+ AK 
Sbjct: 1248 ILLSADYSQLELRLIAHLSEDKQLSRVLNDGGDVFKAIASEWLCIPTDHVSDEQRQRAKQ 1307

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            + + IIYG++P  L  Q+++P  +AA ++  +  R+ GI ++IEKT    R+ GYV TI 
Sbjct: 1308 MCYGIIYGMTPMALGEQMKVPEEQAATFMHTFKSRYNGIAKFIEKTLVSCRREGYVSTIM 1367

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED---------- 913
             R+     I S  + +R+  ER AIN  +QGSAAD+ + AMI++HK +++          
Sbjct: 1368 NRKRLLPNIRSTNARLRSHAERQAINTTVQGSAADLVKIAMINIHKRIDEMCANRANRDN 1427

Query: 914  HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +   K +LQ+HDEL+FE+   E+ + S I+   ME A    + LRV L+V IK    W 
Sbjct: 1428 AEWKPKFVLQMHDELLFEIKANELESVSLIVKQEMENA----LKLRVKLEVKIKTGKYWG 1483

Query: 974  E 974
            E
Sbjct: 1484 E 1484


>gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 352

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 148/346 (42%), Positives = 206/346 (59%), Gaps = 4/346 (1%)

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           +G++L+ +LK P   KTK     +T     +     + +   ++  R LSK+KSTY D L
Sbjct: 8   MGEVLYERLKLPHARKTKGKTGYSTDYRELERLAAYHDLPAAVISHRNLSKLKSTYVDKL 67

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
              I+    RVHT ++   T TGRL+S  PNLQNIPI+T  G+++R AF++      ++A
Sbjct: 68  ATLIDPADGRVHTTFNQTVTATGRLSSSNPNLQNIPIRTPEGRRLRAAFVAAAEHLFLAA 127

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DYSQI+LR+LAH +    L + F +  DIH   AAEIF VN   VS  MRR AKTINF I
Sbjct: 128 DYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGI 187

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YG+S F LA QLR  R EA  +I RYF  + G+H ++++     R++G+V T+  RR  
Sbjct: 188 VYGMSAFGLAEQLRCSRKEAQTFIDRYFELYQGVHRFMQEIVEQARRDGWVGTLLQRRRP 247

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             EINS     R   ER AIN PIQG+AADI + A I+  ++L +    ++ LLQIHDEL
Sbjct: 248 LPEINSGNKMRREFAERTAINTPIQGTAADIIKLAAIACDRALREADCRSEALLQIHDEL 307

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +FEVP++E+     +I  +ME+       L VPL VN+K   N  E
Sbjct: 308 IFEVPQDELAQVGPLIRQAMEEVM----ELAVPLTVNLKSGPNLSE 349


>gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix
           jacchus]
          Length = 965

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 153/546 (28%), Positives = 279/546 (51%), Gaps = 42/546 (7%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLS 514
             I  N K + ++VL  +G       +  F   D  + ++++D   ++     + +K+  
Sbjct: 378 PVICFNAKDFVRIVLQFFGNNGSWKHVADFVGLDPRIAAWLIDPSDAAPSFEDLVEKY-- 435

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              K I  + K S      S + V ++  EN  ++ +L + L  KL    L  ++  L+ 
Sbjct: 436 -CDKSI--TVKVSSTYGNSSRNIVNQNVRENLKILYRLTMDLCSKLKDYGLWQLFCTLEL 492

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   IQ++++ +++ S+ +   L  LE+  + ++GE+F + S  QL +ILF
Sbjct: 493 PLIPILAVMESHTIQVNKEEMEKTSSLLGARLKELEQEAHFVAGEQFLIMSNNQLREILF 552

Query: 635 TKLKFPSG------AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK           +T   ++ +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 553 GKLKLHLLSPRNCFPRTGLQKYPSTSEAVLNALRDVHPLPKIILEYRQVHKIKSTFVDGL 612

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ-------------NIPIKTDLGQKIRR 735
              + K +  + + ++   T+TGRL++  PN+Q             N   K D    I  
Sbjct: 613 LACMKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITKPKNFKGKEDEILTICP 670

Query: 736 --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
              F+S      ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   V +E
Sbjct: 671 RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVE 730

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            V+   R   K + +S++YG    RLA  L +P  EAA +++ +  ++  I ++ +    
Sbjct: 731 HVTHADREQTKKVVYSVVYGAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDFAQAAIA 790

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
              Q GY+ +I GRR     I++    ++   ER A+N  +QGSAAD+ + AMI V  ++
Sbjct: 791 QCHQTGYMVSIMGRRRPLPRIHARDQQLQAQAERQAVNFVVQGSAADLCKLAMIRVFAAV 850

Query: 912 -EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIK 967
              H L  +++ QIHDEL+FEV + +I   + ++  +ME      + ++ L+VPLKV++ 
Sbjct: 851 AASHTLTARLVAQIHDELLFEVEDSQIPECAALVRRTMESLEQVQVLELQLQVPLKVSLS 910

Query: 968 VSNNWQ 973
              +W 
Sbjct: 911 AGRSWG 916


>gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ)
            [Danio rerio]
          Length = 2239

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 159/644 (24%), Positives = 286/644 (44%), Gaps = 106/644 (16%)

Query: 431  LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN-IKYDKLVLHRYGISMRG-FED 488
            +S   +          +E L  ++   + +  + + ++ I   K++L    +++RG FED
Sbjct: 1594 ISASLAPPPLDDTLTVEERLKQIQSCLQKDSSVTVTYDFIHLYKILLLACELAVRGTFED 1653

Query: 489  IMLMSYVLDSG---RSSHDI-ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              +  ++LDS    R+ H++  S A + L             S+ I   +    +  A  
Sbjct: 1654 PKIACWLLDSSSKERTLHNMVTSFATEDLPLLEGISAGQGVQSLGIFGEASQPGRYRAAI 1713

Query: 545  NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
             S ++ ++   L   L  +  L V+++++ P    ++ +E+ GI       +     +  
Sbjct: 1714 ESVLVFRVMTQLNCLLEKDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQKHVMQA 1773

Query: 605  NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS-------------------GAKT 645
             L +LE   Y L+G  F+L+SP+ + ++LF +LK P                    GA+ 
Sbjct: 1774 KLSALESQAYQLAGHSFSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARI 1833

Query: 646  KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN----HINKRTQRVHT 701
            K  +  +T +D+ +     +P+   ILEWR+++   +     L      H + +  R+H 
Sbjct: 1834 KLSKQFSTTKDVLEKLKPLHPLPGVILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHP 1893

Query: 702  FYSLASTMTGRLASLEPNLQNIPIKTDLGQK----------------------------- 732
              S + T TGR++  EPN+QN+P   ++                                
Sbjct: 1894 I-SQSHTATGRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWCKRTKINRQLAP 1952

Query: 733  ------------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
                              +R AF+      +++ DYSQ+ELRILAH+++   L  V  + 
Sbjct: 1953 LLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSG 2012

Query: 775  LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
             D+ + +AAE   V+   V   MR+ AK I + IIYG+    L  Q+ I  ++AA YI+ 
Sbjct: 2013 ADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKSLGEQMGIEENDAACYIET 2072

Query: 835  YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
            +  R+ GI  ++ +T     +NGYV+T+ GR+     I      I++  ER A+N  +QG
Sbjct: 2073 FKSRYNGIQNFLRETVQKCGKNGYVKTLLGRKRFLPGIKDSNVYIKSHAERQAVNTTVQG 2132

Query: 895  SAADITRRAMISVHKSLEDH-------------KLATK------------MLLQIHDELV 929
            SAADI + A I++ + +E+              +L  +             +LQ+HDEL+
Sbjct: 2133 SAADIVKLATINIQRRIEEAFPGVPTSHQHPSIRLGGRHRNQFRPLRGGYFILQLHDELI 2192

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +EV EE++   +QI+   ME      + L V L+V +KV  +W 
Sbjct: 2193 YEVAEEDVIQVAQIVKREMESV----VKLYVKLRVKVKVGPSWG 2232


>gi|237716863|ref|ZP_04547344.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442846|gb|EEO48637.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 435

 Score =  367 bits (943), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 215/467 (46%), Gaps = 37/467 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M   N LFL+D  + IYRA+YA     R    G   +AI GF N L ++L+        +
Sbjct: 1   MDSSNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKEN----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR+E +  YKA R + PE +   +P+++   +A+ IP +E+ G+EADD
Sbjct: 57  HIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI-P 175
           +I T    A ++G    +++ DKD  QLVS    +Y        E + +E V  K+ I  
Sbjct: 117 VIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDIQS 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +++ +  L GDS DNIPG PG+G KTA  L+ E+G++EN+L +  ++K    +  +  
Sbjct: 177 PAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGA-LKTKVET 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E    S+ L  ++ DVPI + ++ L+ E+ +   L S  + LEF  LI+RV       
Sbjct: 236 NREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRVLKKEVSG 295

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
                     + T ++    +    +    I+   F++ +      N     +K  LE L
Sbjct: 296 NGITSTPKSKVATGKSAPSPLPLFPEEGGGIQGDLFANFTP-----NEPNEAKKSNLETL 350

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +  S       +Y  I   K  ++ +QKL T    S    T   +   ++ + ++ S  +
Sbjct: 351 ESQS------RNYQLIDTEKKRREIIQKLLTSKILSLDTETTETEPMDAELVGMSFSIAE 404

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
            +          ++ +     +          +I+   +  FENE+ 
Sbjct: 405 NE--------AFYVPVPSDRDE--------ALKIVKEFRPVFENENS 435


>gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens]
 gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu
 gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens]
 gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct]
          Length = 900

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 153/546 (28%), Positives = 278/546 (50%), Gaps = 42/546 (7%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLS 514
             I  N K + ++VL  +G       +  F   D  + ++++D   ++     + +K+  
Sbjct: 315 PVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY-- 372

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              K I  + K +      S + V ++  EN   + +L + L  KL    L  ++  L+ 
Sbjct: 373 -CEKSI--TVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL 429

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   IQ++++ +++ SA +   L  LE+  + ++GE+F ++S  QL +ILF
Sbjct: 430 PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREILF 489

Query: 635 TKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK        S  +T   ++ +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 490 GKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGL 549

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI-----PIKTDLGQKIRR-------- 735
              + K +  + + ++   T+TGRL++  PN+Q I      I T    K +         
Sbjct: 550 LACMKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISP 607

Query: 736 --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
              F+S      ++AD+SQIELRIL H++    L ++F+ S   D+   + ++   V +E
Sbjct: 608 RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVE 667

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + ++++YG    RLA  L +P  EAA +++ +  ++  I ++      
Sbjct: 668 QVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIA 727

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
              Q G V +I GRR     I++    +R   ER A+N  +QGSAAD+ + AMI V  ++
Sbjct: 728 QCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAV 787

Query: 912 -EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIK 967
              H L  +++ QIHDEL+FEV + +I   + ++  +ME        ++ L+VPLKV++ 
Sbjct: 788 AASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLS 847

Query: 968 VSNNWQ 973
              +W 
Sbjct: 848 AGRSWG 853


>gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
 gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
          Length = 642

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 164/657 (24%), Positives = 289/657 (43%), Gaps = 67/657 (10%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKII-------------TDTMDAFHSKPIAIAIST 413
           +Y  +    ++ +++  +      +F I                 +D      + I++S 
Sbjct: 3   NYKAVFTISEVMKYLN-IHDKKVVAFDIECAPKNEWFRLNEKKAALDPNKGHIVGISLSV 61

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF-FENEHFLKIGHNIKYD 472
            +           I+I L     ++          ++++LK F F NE  +K+ HNI ++
Sbjct: 62  KEGTG--------IYIPLRHRNGKNVED----VHRMIAWLKGFVFHNESLIKVAHNIAFE 109

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-- 529
              L+ YGI ++    D ML S +  + +S  +  ++ +  L    KEI      S    
Sbjct: 110 SSFLYEYGIVIKEPVFDTMLGSML--TFKSFGEFRTLRECGLKLLAKEIFNEDLPSFSHV 167

Query: 530 -----IDKISDS--QVQEHAIENSNVILQLWL--LLRPKLIVEKLLHVYERLDKPMIDVV 580
                 D +     +   +A  +S+  L+L+   L   +  + +   V ER++ P     
Sbjct: 168 VNGTHFDNLHSEHKETVRYACADSDYALRLYNWCLEWFETYIPEHRLVCERVESPAAVYT 227

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS---PKQLGDILFTKL 637
             M+  GI ++++LL++ +    + L   +  I   +  + NL S    +   D LF  L
Sbjct: 228 GIMKKNGITLNKELLQEFNRRAEEELEFCKREILSFANREVNLGSNLQTQDFKDFLFKDL 287

Query: 638 KFPSGAKTKTGQWKTTAQ-------DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           + P     + G+     +          +       +I+ I   +++SK+KSTY ++L  
Sbjct: 288 RLPVLKICEKGEPSLDDESLILLDEWCLRNFKKGTYLIECIKRHKRVSKLKSTYIEALGK 347

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            +N  T ++HT +    T TGR +S  PNLQN+P K +    IR+ FI  P    +  D+
Sbjct: 348 LLNCETGKIHTDFFSMGTETGRFSSRNPNLQNLPRKDNDHLGIRKLFIPSPNHVFLDFDF 407

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS-------PQMRRHAKT 803
           SQIELR+ A+  +   +   F    DIH +  + I+ + +E+ +        + R  AK 
Sbjct: 408 SQIELRVGAYYCRDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKN 467

Query: 804 INFSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
            NF + +G+ P  L   L       I   +    I+     +P +  + + T       G
Sbjct: 468 CNFGVFFGLFPKGLQKTLMYKGGINISEKDCERIIRNIKDGYPRLSTWQKDTVKVAAYRG 527

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
           Y  +  GRR +  +I S   + R ++ER A+N PIQG+AADI + AM  + + L + +  
Sbjct: 528 YTRSRTGRRRYLKDIKSKDWNKRAVSERCALNTPIQGTAADIIKIAMARILRELPEREY- 586

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            K LLQIHDEL+FEV E+++  A   I   ME+   P  +  +PLKV   V  N+ E
Sbjct: 587 IKPLLQIHDELLFEVREDKVNEAIAFIKDCMER--TPFKDFNIPLKVEYSVGYNFDE 641


>gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens]
          Length = 900

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 153/546 (28%), Positives = 278/546 (50%), Gaps = 42/546 (7%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLS 514
             I  N K + ++VL  +G       +  F   D  + ++++D   ++     + +K+  
Sbjct: 315 PVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY-- 372

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              K I  + K +      S + V ++  EN   + +L + L  KL    L  ++  L+ 
Sbjct: 373 -CEKSI--TVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL 429

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   IQ++++ +++ SA +   L  LE+  + ++GE+F ++S  QL +ILF
Sbjct: 430 PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREILF 489

Query: 635 TKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK        S  +T   ++ +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 490 GKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGL 549

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI-----PIKTDLGQKIRR-------- 735
              + K +  + + ++   T+TGRL++  PN+Q I      I T    K +         
Sbjct: 550 LACMKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISP 607

Query: 736 --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
              F+S      ++AD+SQIELRIL H++    L ++F+ S   D+   + ++   V +E
Sbjct: 608 RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVE 667

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + ++++YG    RLA  L +P  EAA +++ +  ++  I ++      
Sbjct: 668 QVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIA 727

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
              Q G V +I GRR     I++    +R   ER A+N  +QGSAAD+ + AMI V  ++
Sbjct: 728 QCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAV 787

Query: 912 -EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIK 967
              H L  +++ QIHDEL+FEV + +I   + ++  +ME        ++ L+VPLKV++ 
Sbjct: 788 AASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLS 847

Query: 968 VSNNWQ 973
              +W 
Sbjct: 848 AGRSWG 853


>gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens]
          Length = 2724

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 293/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 2035 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 2093

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 2094 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 2152

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 2153 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 2212

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 2213 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 2272

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 2273 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 2332

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 2333 EWRRITNAITKVVFPLQREKCLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 2391

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 2392 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 2451

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 2452 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 2511

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 2512 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 2571

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 2572 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 2631

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 2632 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVVEEDVVQVAQI 2691

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 2692 VKNEMESA----VKLSVKLKVKVKIGASWGE 2718


>gi|3510695|gb|AAC33565.1| DNA polymerase theta [Homo sapiens]
          Length = 1762

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 293/691 (42%), Gaps = 130/691 (18%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1073 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1131

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1132 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 1190

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 1191 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 1250

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 1251 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 1310

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 1311 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLIL 1370

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 1371 EWRRITNAITKVVFPLQREKCLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 1429

Query: 729  LGQK----------------------------------------------------IRRA 736
            +                                                       +R A
Sbjct: 1430 IKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHA 1489

Query: 737  FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
            F+  P   +++ADYSQ+ELRILAH++    L QV     D+ R +AAE   +  E V   
Sbjct: 1490 FVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDD 1549

Query: 797  MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            +R+ AK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI++++ +T    +++
Sbjct: 1550 LRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRD 1609

Query: 857  GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911
            G+V+TI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L     
Sbjct: 1610 GFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHS 1669

Query: 912  --EDHKLATKM--------------------------LLQIHDELVFEVPEEEITTASQI 943
              + H     M                          +LQ+HDEL++EV EE++   +QI
Sbjct: 1670 TFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVVEEDVVQVAQI 1729

Query: 944  IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + + ME A    + L V LKV +K+  +W E
Sbjct: 1730 VKNEMESA----VKLSVKLKVKVKIGASWGE 1756


>gi|332259946|ref|XP_003279044.1| PREDICTED: DNA polymerase nu-like [Nomascus leucogenys]
          Length = 1502

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 149/513 (29%), Positives = 268/513 (52%), Gaps = 34/513 (6%)

Query: 488  DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            D  + ++++D   ++     + +K+     K I  + K +      S + V ++  EN  
Sbjct: 950  DPRIAAWLIDPSDATPSFEDLVEKY---CEKSI--TVKVNSTYGNSSRNIVNQNVRENLK 1004

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            ++ +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++ SA +   L 
Sbjct: 1005 ILYRLTMDLCSKLKDYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLK 1064

Query: 608  SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWKTTAQDLEQIN 661
             LE+  + ++GE+F + S  QL +ILF KLK        S  +T   ++ +T++ +    
Sbjct: 1065 ELEQEAHFVAGERFLIMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNAL 1124

Query: 662  CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TGRL++  PN+Q
Sbjct: 1125 RDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTGRLSAKHPNIQ 1182

Query: 722  NI-----PIKTDLGQKIRR----------AFISPPTKKLISADYSQIELRILAHIAKITP 766
             I      I T    K +            F+S      ++AD+SQIELRILAH++    
Sbjct: 1183 GISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELRILAHLSGDPE 1242

Query: 767  LYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L ++F+ S   D+   + ++   V +E+V+   R   K + ++++YG    RLA  L IP
Sbjct: 1243 LLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGIP 1302

Query: 825  RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
              EAA +++ +  ++  I ++         Q GYV +I GRR     I++    +R   E
Sbjct: 1303 VQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGYVVSIMGRRRPLPRIHAHDQQLRAQAE 1362

Query: 885  RAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQI 943
            R A+N  +QGSAAD+ + AMI V  ++     L  +++ QIHDEL+FEV + +I   + +
Sbjct: 1363 RQAVNFVVQGSAADLCKLAMIHVFTAVAASGTLTARLVAQIHDELLFEVEDPQIPECAAL 1422

Query: 944  IVHSMEK---ACLPKINLRVPLKVNIKVSNNWQ 973
            +  +ME        ++ L+VPLKV++ V  +W 
Sbjct: 1423 VRRTMESLEQVQALELRLQVPLKVSLSVGRSWG 1455


>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
 gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
          Length = 582

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 159/623 (25%), Positives = 285/623 (45%), Gaps = 62/623 (9%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             ++  I   + +++  + L         I    +    ++   + ++            
Sbjct: 5   TAAFRLITGPEGLREAARALAGARRVGLDIEATGLSPLDARMRLLQLA------------ 52

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL-VLHRYGISM 483
                        ++   +    + LS L++  E    LK+ HN KYD   +L ++GI +
Sbjct: 53  ----------AGGETFVVDVFEVKDLSPLREALE-GGPLKVLHNAKYDYSFLLAQHGIRL 101

Query: 484 RGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
               D ML + +LD G    S+ + ++A ++L    + + K+ +      ++S  Q+ E+
Sbjct: 102 SPLFDTMLAAQLLDGGEQGPSYSLEAVAGRYLQ---ETVDKTARREDWSKELSREQL-EY 157

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A  ++ ++L L   L+  L  E L  V  R++   +  +++ME+ GI++D    +++   
Sbjct: 158 AARDAAILLPLHERLQELLEREGLGPV-SRIEFGAVPAIAEMELAGIRLDVRRWRELERV 216

Query: 602 ISKNLLSLEENI------------YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           + +        +             +  G + NL+SP+Q+ +  F  +            
Sbjct: 217 VRRRRDEAARRLESHFPQPEGVLPLEGLGPRLNLNSPQQIMEA-FRSIGIELP------- 268

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
                  +  +   D+P  +++LE+R+L K   TY ++    ++ +T R+H  +      
Sbjct: 269 ----DTRMWTLLTVDHPAARDLLEYRELQKKLGTYLETYEGFVHPKTGRIHASFLQCRVP 324

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRLA   PN+Q IP + +      R F++     L+ ADYSQIELRILA ++      +
Sbjct: 325 TGRLACTNPNVQQIPHEDEFR----RCFVAGEGNVLVIADYSQIELRILAEVSGDPGFVE 380

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    D+HR+ AA +FGV  E+V+ + R  AK INF + YG  P  LA QL      A 
Sbjct: 381 AFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINFGLAYGRGPRSLAAQLGTDEERAR 440

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
             I  YF  +  +  Y+ +T N   + G + T+ GR   +       S+ R   +R A+N
Sbjct: 441 RLIDEYFATYGRVQRYLNETANRALKEGALRTLSGRLRKFGRTRGLSSAERGALKREAMN 500

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQG++ADI + A+I +H  L D  L  +++  IHDE V E  EE+   A+  +  +M 
Sbjct: 501 YPIQGTSADIAKLALIFIHSELRD--LDARLINCIHDEFVVECAEEQAEEAASRVRSAMV 558

Query: 950 KACLPKINLRVPLKVNIKVSNNW 972
           +A    +  RVP++V + VS  W
Sbjct: 559 RAGERLLK-RVPVEVEVAVSREW 580


>gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus]
          Length = 858

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 154/596 (25%), Positives = 288/596 (48%), Gaps = 50/596 (8%)

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK- 470
           S LD+      + E   +      + +   +N L++ +   L           +  N K 
Sbjct: 262 SILDEDQCIYIQTEHSCLASQEQEAHNQFARNMLSQVLKRKL---------PVVCFNAKD 312

Query: 471 YDKLVLHRYG-----ISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           + + VL   G       +  F   D  + ++++D   ++     +  K+L  +      +
Sbjct: 313 FVRTVLQFLGDADSWKHVADFVGLDPRIAAWLIDPRDATLSFEHLVAKYLEKST-----T 367

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
            K S      S + V ++   N  ++ +L + L  KL    L  ++  L+ P+I +++ M
Sbjct: 368 VKVSSTYGNASRNIVNQNVHMNLRILHRLMMTLCSKLKAYSLWQLFWTLELPLIPILAVM 427

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP--- 640
           E   +Q++++ +++ SA +   L  LE+  + ++GE+F ++S  QL +ILF KLK     
Sbjct: 428 ERHSVQVNKEEMERTSALLGARLKELEQEAHFVAGERFLITSNNQLREILFDKLKLHLLS 487

Query: 641 --SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                KT   ++ +T++ +       +P+ K ILE+RQ+ KIKST+ D L   + + +  
Sbjct: 488 QRRLPKTGLQKYPSTSEAVLNALQDLHPLPKIILEYRQVHKIKSTFVDGLLACMREGS-- 545

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPI---------------KTDLGQKIRRAFISPPTK 743
           + + ++   T+TGRL++  PN+Q I                    L    R  F+S    
Sbjct: 546 ISSTWNQTGTVTGRLSAKHPNIQGISRHPIHITKPQNTKGKEDEILTISPRAMFVSSAGH 605

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHA 801
             ++AD+SQIELRILAH++    L ++F  S   D+   + ++   + +E V+   R   
Sbjct: 606 TFLAADFSQIELRILAHLSGDAELLKLFHESEREDVFSTLTSQWKNMPVEHVTHVDREQT 665

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K + +S++YG    RLA  L +   EAA +++ +  ++  I ++ +       Q GYV +
Sbjct: 666 KKVVYSVVYGAGKERLAACLGVAVPEAARFLETFLQKYKKISDFAQAAIAQCHQRGYVTS 725

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKM 920
           + GRR     I + +  +R   ER A+N  +QGSAAD+ + AMI +  ++     L  ++
Sbjct: 726 VTGRRRPLPRICAQEPHLRAQAERQAVNFVVQGSAADLCKMAMIRIFAAVSSSPTLTARL 785

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIKVSNNWQ 973
           + QIHDEL+FEV + +I   + ++  +ME        ++ L+VPLKV++ V  +W 
Sbjct: 786 VAQIHDELLFEVEDAQIPEFAALVRGTMESLQQVPALELQLQVPLKVSLSVGRSWG 841


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score =  364 bits (935), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 156/654 (23%), Positives = 314/654 (48%), Gaps = 46/654 (7%)

Query: 333  SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF 392
              S      +++Q P  + +          I+   Y  + + + ++      +   +   
Sbjct: 1167 PPSQPEKVASNDQPPIPVDVYYSVNYDPLLIDGIIY--VDSYEKLESLKPLFKDPKAVGV 1224

Query: 393  KIITDTMD--AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
             I T  +D      + + +++          FK+ T     +  +     G+N L K   
Sbjct: 1225 DIETTGLDHNTNQIRLVQLSVPNQPSVIIDLFKLNTN----NPESDNVVPGRNELIK--C 1278

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS-SHDIASI 508
             +LK  F+++  +K+ HN K+D   L  YG    G   D M+ S +L + R  S  +  +
Sbjct: 1279 EWLKNLFKSKDTVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKLLVASRYISCKLTHV 1338

Query: 509  AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            ++++L+     + K+++ S         +   ++  +S V+L L+++L   L +  L  +
Sbjct: 1339 SERYLNIV---LDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLYVILEHLLKINNLADI 1395

Query: 569  YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY-DLSGEKFNLSSPK 627
               ++   I   S ME+ GI++D+D L+ +  E+ +    +  ++Y  L+  + NL+S K
Sbjct: 1396 A-SVENKCILATSDMELNGIKVDEDKLRILQDELKQEHQEISNDLYSQLNHSEINLNSQK 1454

Query: 628  QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
            Q+ + L          ++K      T++    I    NPII ++ E+R+ +K  + +   
Sbjct: 1455 QVLEKLQE---LKIMDRSKKKIISDTSESTL-IRNMSNPIISSLREYRKANKALTAFTQK 1510

Query: 688  LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
            LPNHIN  T+R++  Y+     +GR +   PNLQ +P      +K R  F++P   K + 
Sbjct: 1511 LPNHINPITKRIYPNYNQLGAESGRFSCDGPNLQQVPRD----KKFRECFVAPKGSKFVI 1566

Query: 748  ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            AD+SQIELRI A IA    + Q ++ ++D+H + A+ +   +I +V+ + R+ AK +NF 
Sbjct: 1567 ADFSQIELRIAAEIANDPKMIQAYQQNVDLHSLTASILKNKSINEVNKEERQLAKAVNFG 1626

Query: 808  IIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
            +I+G+S   L         L++ ++EA +    +F+ F GI  +    KN   +   V T
Sbjct: 1627 LIFGMSINGLRMYAETGYNLKLTQTEAKEIYTSFFNNFKGILNWHNSVKNS--RPTMVRT 1684

Query: 862  IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
            +  R   ++          + +   ++N P+QG++ADIT+  M  +  S++   L  K++
Sbjct: 1685 LGNRLSVFE----------SFSFTRSLNYPVQGTSADITKETMARLVDSVK--PLNAKII 1732

Query: 922  LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            + +HDE++ EVPE+    A ++++ +M K+    +  +VP++    + ++W ++
Sbjct: 1733 ICVHDEIILEVPEDNAEKALKMLIDTMVKSGEKYLK-KVPVEAMGSIGDSWADK 1785


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 158/619 (25%), Positives = 295/619 (47%), Gaps = 59/619 (9%)

Query: 371  IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
            + N + ++      E     +  I T  ++    +   + IST DQ       V      
Sbjct: 1040 VNNPESLESLAPLFEHTKLCTLDIETTGLNHREDRIRLLQISTPDQPS-----VVIDVFK 1094

Query: 431  LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDI 489
            + V T ++ T           +L K   ++   K+ HN K+D   L   G +++G   D 
Sbjct: 1095 VPVPTLKECT-----------WLVKLLGSQAV-KVLHNGKFDINFLSHNGFNVKGPIFDT 1142

Query: 490  MLMSYVLDSGRSSHD--IASIAQKWLSYTRKEILKSRK-SSIPIDKISDSQVQEHAIENS 546
            M+ + +L + R +    +  +A+++L+     + KS++ S   +D + + QV  +A  ++
Sbjct: 1143 MIAAKLLSATRFNWSCKLGHVAERYLNIV---LDKSQQFSDWTLDPLFEEQVI-YASRDT 1198

Query: 547  NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
             V+L L+ +L+ KL  E+L  +   ++   +  V QME  GI++D D LK + A + K  
Sbjct: 1199 AVLLPLYFILQEKLKAERL-DMIADIENKCVLAVCQMEQNGIKVDLDKLKSLQAALDKEN 1257

Query: 607  LSLEENIYDLSG----EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
             +  +++ D  G      FN +S +Q+   L  +       KT+ G  + T++     N 
Sbjct: 1258 ETAMKHLGDTLGVSSNPNFNYNSQRQILQALQQQ---KVMDKTRRGLIQDTSERTLSRNT 1314

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
              +P I+ + E+R+ +K  + + + +PNHI+  T R++   +     +GR +   PNLQ 
Sbjct: 1315 Y-HPAIQALREYRKTNKAVTAFTEKIPNHIDSATGRIYPNINQIGAESGRFSCDNPNLQQ 1373

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
            IP  +    + R  FI+    KL+ AD+SQIELRI A IA+   + + + +  D+H + A
Sbjct: 1374 IPRDS----RFRECFIADKGNKLVIADFSQIELRIAADIAEDRRMIEAYNSGEDLHSLTA 1429

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYF 836
            + +    I +V+ + R+ AK +NF +I+G+S             + +    A +    +F
Sbjct: 1430 SLVKNKPISEVTKEERQLAKAVNFGLIFGMSLAGFRNYAESCYGVVLSVPAAREIYDSFF 1489

Query: 837  HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
              + GI  + E+ K    +   V T+  R   +D            +   ++N P+QG++
Sbjct: 1490 KSYSGITAWHERMK--AAKPISVRTLSNRLSVFD----------QFSFTRSLNYPVQGTS 1537

Query: 897  ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
            ADIT+ AM  +   + D  ++ KM+L IHDE++ EVPE     A ++++ +ME A    +
Sbjct: 1538 ADITKEAMALLVDRVAD--ISGKMILCIHDEIILEVPESNANKALEVLIETMETAGNKFL 1595

Query: 957  NLRVPLKVNIKVSNNWQEE 975
               VP K    + ++W E+
Sbjct: 1596 RY-VPCKAMGSIGDSWAEK 1613


>gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 645

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 163/654 (24%), Positives = 281/654 (42%), Gaps = 66/654 (10%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITD-----------TMDAFHSKPIAIAISTLD 415
            Y  + +  +++ ++ K    G  +F   T             +DA  +    ++ S  +
Sbjct: 2   EYKCVTDLTELRDYLDKA---GLIAFDFETAPREKYRRDEKAALDAHKADIAGVSFSVSE 58

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                      +++ L   T +++   + + + +       F N   +KI HN+ ++ + 
Sbjct: 59  G--------TAVYVPLKHKTGKNAGSPDKIMQWLSE---NVFANRKVVKIAHNLSFEAMF 107

Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK-------SRKSS 527
           L+  G+ ++    D +  +  L + +S+    ++A   L    +E+         +  + 
Sbjct: 108 LYALGVVLQPPCYDTIAAA--LMTLKSNTAFRTLADSGLKTLTQELFGVDLPSFETVTAG 165

Query: 528 IPIDKIS--DSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERLDKPMIDVVSQM 583
              D++   D +   +A  +S+  L+L+ L        + K   + E+L+ P       M
Sbjct: 166 RYFDELDPQDEETVRYACADSDYTLRLYHLFNNWFNRYLPKHRFIVEKLESPAAVYCGLM 225

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS---SPKQLGDILFTKLKFP 640
           +  G+  D++L+ +  AE    L  L  NI  L G+  N+    S       L+  LK P
Sbjct: 226 KYNGLLADEELMLKKQAEAEGKLAELRGNIAFLIGD-VNIGANASTSAFKKYLYDDLKLP 284

Query: 641 SGAKTKTGQWKTT-------AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
               T   Q           ++   +       + + + E+R+  KIKSTY D    +IN
Sbjct: 285 VFKTTAKYQEAMDDEAMILLSEWCRENRPELAELFELVQEYRRWGKIKSTYIDGYLEYIN 344

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             T R+H       T TGR A+  PNLQN P K +    +R  FI+P  K L+S D+SQI
Sbjct: 345 SVTGRIHPDMFPLGTETGRFAARNPNLQNCPRKDNDPVGVRNFFIAPKGKALLSLDFSQI 404

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS-------PQMRRHAKTINF 806
           ELR+ A   +   + + +    DIH    + I+ +  E+ +        + R  AK  NF
Sbjct: 405 ELRVGAFYCRDERMLETYRTGGDIHAQTTSVIYRIPFEEAADKSAQHYKERRAIAKNCNF 464

Query: 807 SIIYGISPFRLATQLRI------PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            + YG+ P  L   L+       P SE    I      +P + ++ EKTK       Y E
Sbjct: 465 GVFYGLFPKGLHRNLKFKAGLDTPLSECERIIANLKAGYPRLVQWQEKTKKRAASRRYTE 524

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T  GRR +  +I S     ++  ER A+N PIQG+AADI + A+  + + L    +  + 
Sbjct: 525 TWLGRRRYLPDIASSDWGKKSFAERCALNTPIQGTAADILKLALGRIIEGLPQR-MRLRP 583

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LQIHDELVFEVPE+++  A+  I   ME+   P     VP+         + E
Sbjct: 584 VLQIHDELVFEVPEDKVHEAAVFIKSCMEE--RPFEEFDVPIVAEAAFGVRFGE 635


>gi|310814704|ref|YP_003962668.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753439|gb|ADO41368.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 339

 Score =  363 bits (933), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 155/311 (49%), Positives = 212/311 (68%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K +HL L+DGS++I+RA++A P L+RK DGLP+ A+AGFC ML + ++N+     A+H A
Sbjct: 11  KGSHLHLIDGSAYIFRAYHALPPLTRKSDGLPIGAVAGFCAMLQRYVENNNGPEAATHIA 70

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           VIFD  ++TFRN+IYP+YKA+RP +PE L PQ PL R AT AF I   EI+GFEADDIIA
Sbjct: 71  VIFDKGSITFRNDIYPEYKAHRPPLPEDLRPQFPLTRAATAAFNIAYKEIEGFEADDIIA 130

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A + G  VT+IS+DKDLMQLV P  C++D +K + ID + VI+K+G+ P+++V +
Sbjct: 131 TLAREAAEAGGRVTVISSDKDLMQLVGPAVCMFDPMKNKLIDADGVIEKFGVAPDRVVDV 190

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           QAL GDS+DN+PG PGIG KTAA L+ EYG+L+N+L NA++IKQ KRRE ++ +A+  R+
Sbjct: 191 QALAGDSVDNVPGAPGIGIKTAAQLIGEYGDLDNLLANAAQIKQPKRRETLINFADQIRV 250

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           SR+LV L   VP+   L  L+L       L+ FL  +EF  +  RVA     DA  I   
Sbjct: 251 SRRLVQLDAQVPLDFTLADLVLRAPEPEVLLGFLTEMEFRNISKRVADKMGVDAPMIAAA 310

Query: 303 VLDINTTENKG 313
                  +N  
Sbjct: 311 SPPRALPKNPH 321


>gi|260816346|ref|XP_002602932.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
 gi|229288246|gb|EEN58944.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
          Length = 2215

 Score =  363 bits (933), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 155/664 (23%), Positives = 272/664 (40%), Gaps = 111/664 (16%)

Query: 413  TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK--IGHNIK 470
              + K  T++ +   +   +              +E L  +K   E        +  ++K
Sbjct: 1553 VAEWKTKTNYAIAVAYT--TDEMIPPPLDDRLPVEERLHNIKSVLEKGDVCSSQVLFDLK 1610

Query: 471  YDKLVLH-RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
                 L    GI+M G FED  +  ++LD G          Q++       +L+      
Sbjct: 1611 PQYKALALGCGITMNGDFEDPKVADWLLDPGAKVKSFHGTVQRFTP-QESYLLQGLGGCF 1669

Query: 529  PIDKISDSQVQE-----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
             +  ++ +          A     +   +   L   L  + L   +  ++ P +  +++M
Sbjct: 1670 GVGSLAMTVQNSGSGRMRAALECVLTFHMMEELDKLLEAQGLSTAFRDVEMPSLVTLARM 1729

Query: 584  EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP--- 640
            E+ G        +     +   L  LEE  Y L+G  F L+SP  +  +LF +LK P   
Sbjct: 1730 ELNGAGFSPVECETQCQIMQAKLRMLEEQAYQLAGHTFALTSPDDIAQVLFLELKLPANG 1789

Query: 641  ------------------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
                                   K  +  +T++D+ +     + +   ILEWR++S   +
Sbjct: 1790 DPSSTTNPQPRKTLGTARPARGRKPLKHLSTSKDVLEKLKKFHALPGVILEWRRISNSLT 1849

Query: 683  TYADSLPN--HINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK------ 732
                 L      N R    R++    L  T TGR+   +PNLQNIP   ++         
Sbjct: 1850 KVVFPLQKEKVYNPRLNMDRIYGNCDLH-TATGRVTFHDPNLQNIPKDFEIEMPTIIGDS 1908

Query: 733  --------------------------------------IRRAFISPPTKKLISADYSQIE 754
                                                  +R AFI      L++ADYSQ+E
Sbjct: 1909 PPPGCGETVSKRKGRKVVRRTDGRRVESDGAGQAFSVSLRHAFIPFQGGVLLAADYSQLE 1968

Query: 755  LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            LRI+AH+++ + L QV  +  D+ + +A++  GV +E VS ++R+ AK + + +IYGI  
Sbjct: 1969 LRIIAHLSQDSKLTQVLNSGQDVFKAIASQWKGVAMEDVSDKLRQQAKQLCYGMIYGIGA 2028

Query: 815  FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
              L  QL +   E A +I+ +  ++ G+  Y+  T +  +++G+V+T+ GRR +   I  
Sbjct: 2029 KALGEQLGVDEEEGACFIETFKSKYTGMRRYLHTTVDQCKKDGFVQTMAGRRRYLPGITE 2088

Query: 875  PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-------------------- 914
                +R   ER A+N  +QGSAAD+ ++AM+S+ + L+                      
Sbjct: 2089 GNHHVRCHAERQAVNTTVQGSAADLVKKAMVSIDQKLQKLFPATRRSHRQDTQKRSRRSQ 2148

Query: 915  -----KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
                      ++LQ+HDEL++EV  E++   +QI+ H ME A    + L V L V +KV 
Sbjct: 2149 QPSSPPRGAYLILQLHDELIYEVRREDVQQVAQIVKHEMENA----VKLSVVLPVKVKVG 2204

Query: 970  NNWQ 973
              W 
Sbjct: 2205 PTWG 2208


>gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1]
          Length = 850

 Score =  363 bits (933), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 159/546 (29%), Positives = 260/546 (47%), Gaps = 49/546 (8%)

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--RGFEDIMLM 492
            ++D    +   +E L+ L++    E  L       YD   +   G+++   G  D+   
Sbjct: 349 AAEDGRAADGSGEEALALLERVRPAELLL-------YDGKAMAARGLTVPEAGAWDLRTA 401

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
            Y+L           +A+K       E      +   + +  D+ +  H           
Sbjct: 402 HYLLHP--------DVAEKTFPSLIAEGEAPAPALFRLRQGLDAAMTRH----------- 442

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
                     + L  V E +D P+I V+ +ME  G+++D      +  E++  + ++E  
Sbjct: 443 ----------QGLRDVMEGIDLPLIPVLLRMERWGVRLDPSRFAALQEELAARIRAIEAQ 492

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQWKTTAQDLEQINCGDNPIIKN 670
           + D++G   NL+SPKQ+ D+LF +L F    KTK  TG     A            +   
Sbjct: 493 VEDMAGTAVNLNSPKQVADLLFVQLGFAPEGKTKGKTGFSTGAAVLEHLARLPGGEVPAL 552

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           +LE R+LSK++S +   L     +    +HT +  A T TGRL+S +PNLQNIP      
Sbjct: 553 LLEHRELSKMQSGFVVPLQKAAEEGEGVIHTTFEPALTGTGRLSSRDPNLQNIPAFGQWA 612

Query: 731 QKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           ++I++  +        ++ADYSQIELR+LAH+++   L + F N  DIHR  A+ +F + 
Sbjct: 613 ERIKQGLVPVREGNVFVAADYSQIELRVLAHMSREPRLVEAFRNGRDIHRETASWVFSMA 672

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
            E V+P++RR AK INF ++YG+S F LA +L +PR EA+  +KRYF   PG+  +++  
Sbjct: 673 PEFVTPELRRVAKMINFGLLYGMSAFGLAERLDMPRGEASMIVKRYFEALPGVQSFLKDI 732

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
                  G+  T+ GR    DE+ +     R   +R  +N PIQG+AADI R+AM+   +
Sbjct: 733 VKEAHAAGFARTLAGRIRPVDEVTA---QGRGGLDRVLVNTPIQGTAADIARKAMVDFDR 789

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
           +        ++ LQ+HD LV E P          +   M  A      L +PL+V +K  
Sbjct: 790 AFRHDG-EVRLFLQVHDSLVCECPAARAEEVGHSLREIMMNAA----TLSLPLEVQLKTG 844

Query: 970 NNWQEE 975
           ++  E 
Sbjct: 845 SSLAEA 850



 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 130/261 (49%), Gaps = 10/261 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            + L +VDG    YRAFYA         DG P   + GF NML+   +  +  +     A
Sbjct: 17  RDRLLIVDGHGLAYRAFYAMERQELSAPDGTPTGVLTGFMNMLFFAEERVKPRA----VA 72

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD P  TFR+E+ P YKA R   PE    Q+PL++   +  G P +   G EADD++A
Sbjct: 73  VAFDAPGPTFRHEMLPQYKATRKPSPEEFKAQVPLLQELLRLMGYPLLIQSGVEADDVMA 132

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPE 177
           +    A ++G+   ++S+DKDLMQ++ P   +   +K      E         + G  P 
Sbjct: 133 SLALRATEKGWQAVLLSSDKDLMQVLGPGVLIMRPLKSGVSSAEIYSAADFEAEKGFSPS 192

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            +    AL GD  DN+PG+ GIG KTA  L+  +  LE +    S ++   R++      
Sbjct: 193 SVPDYLALLGDKADNVPGVAGIGEKTAGELISRWTTLEAVFDGLSEVRPAVRKKLEASGL 252

Query: 238 ETARLSRKLVMLRTDVPITIP 258
           E A+ SR L+ LR DVP+ + 
Sbjct: 253 EAAQRSRDLIRLRLDVPLDLD 273


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 163/658 (24%), Positives = 309/658 (46%), Gaps = 46/658 (6%)

Query: 329  SQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG 388
             +  S S  T     +Q    + +          I+   Y  + +   +Q      +   
Sbjct: 1163 GEPPSSSKPTPVTTGDQVSIPVDVYYSVNFDPLLIDGIIY--VDSYDKLQSLEPLFKDPK 1220

Query: 389  SASFKIITDTMD--AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
            +    I T  +D      + + +++          FK+ T   D          G+N L 
Sbjct: 1221 AVGVDIETTGLDHNTNQIRLVQLSVPNQPSLIIDLFKLSTNNPD----AESVVPGRNELI 1276

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS-SHD 504
            K    +LKK F+++  +K+ HN K+D   L  YG    G   D M+ S +L + R  S  
Sbjct: 1277 K--CEWLKKLFKSKETVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKLLVASRYISCK 1334

Query: 505  IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +  +++++L+     + K+++ S         +   ++  +S V+L L+++L   L +  
Sbjct: 1335 LTHVSERYLNIV---LDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLYVILEHLLKINN 1391

Query: 565  LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY-DLSGEKFNL 623
            L  +   ++   I   S ME+ GIQ+D+D LK +  E+ +    +   +Y  L+  + NL
Sbjct: 1392 LSDIA-SVENKCILATSDMELNGIQVDEDKLKFLQDELKQEHQEISNTLYSQLNQSEINL 1450

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            +S KQ+ + L          K+K      T++    I    NPII ++ E+R+ +K  + 
Sbjct: 1451 NSQKQVLEKLQE---LKIMDKSKKKIISDTSESTL-IRNMSNPIISSLREYRKANKALTA 1506

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
            +   LPNHIN  T+R++  Y+     +GR +   PNLQ +P      +K R  F++P   
Sbjct: 1507 FTQKLPNHINPITKRIYPNYNQLGAESGRFSCDGPNLQQVPRD----KKFRECFVAPKGS 1562

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            K + AD+SQIELRI A IA    + Q ++  +D+H + A+ +   NI  V+ + R+ AK 
Sbjct: 1563 KFVIADFSQIELRIAAEIANDPKMIQAYQQKVDLHSLTASILKNKNINDVNKEERQLAKA 1622

Query: 804  INFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
            +NF +I+G+S   L         L++ ++EA +    +F+ F GI  +    KN   +  
Sbjct: 1623 VNFGLIFGMSINGLRMYAETGYNLKLTQNEAKEIYTSFFNNFKGILNWHNSVKNS--RPT 1680

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
             V T+  R   ++          + +   ++N P+QG++ADIT+  M  +   ++   L 
Sbjct: 1681 MVRTLGNRLSVFE----------SFSFTRSLNYPVQGTSADITKETMARLVDLVK--PLN 1728

Query: 918  TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             K+++ +HDE++ EVPE+    A ++++ +M K+    +  +VP++    + ++W ++
Sbjct: 1729 AKIIICVHDEIILEVPEDNAEKALKMLIDTMVKSGEKYLK-KVPVEAMGSIGDSWADK 1785


>gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta]
          Length = 1484

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 152/546 (27%), Positives = 278/546 (50%), Gaps = 42/546 (7%)

Query: 463  LKIGHNIK-YDKLVLHRYG-----ISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLS 514
              I  N K + ++VL  +G       +  F   D  + ++++D   +      + +K+  
Sbjct: 917  PVICFNAKDFVRIVLQFFGNDGSWKHVADFVGLDPRIAAWLIDPSDAVPSFEDLVEKY-- 974

Query: 515  YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
               K I  + K +   +  S + V ++  +N  ++ +L + L  KL    L  ++  L+ 
Sbjct: 975  -CEKSI--TVKVNSTYENSSRNIVNQNVRDNLKILYRLTMDLCSKLKEYGLWQLFCTLEV 1031

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P+I +++ ME   IQ++++ ++++SA +   L  LE+  + ++GE+F + S  QL +ILF
Sbjct: 1032 PLIPILAVMESHAIQVNKEEMEKISALLGARLKKLEQEAHFVAGERFLIMSSNQLREILF 1091

Query: 635  TKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
             KLK        S  +T   ++ +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 1092 GKLKLHLLSRRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGL 1151

Query: 689  PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ-------------NIPIKTDLGQKIRR 735
               + K +  + + ++   T+TGRL++  PN+Q             N   K D    I  
Sbjct: 1152 LACMKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITKPKNFKGKEDEILTISP 1209

Query: 736  --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
               F+S      ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   V +E
Sbjct: 1210 RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPME 1269

Query: 792  KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
             V+   R   K + ++++YG    RLA  L +P  EAA +++ +  ++  I ++      
Sbjct: 1270 HVTHADREQTKRVVYAVVYGAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIA 1329

Query: 852  FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
               + GYV +I GRR     I++    +R   ER A+N  +QGSAAD+ + AMI V  ++
Sbjct: 1330 QCHRTGYVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIRVFTAV 1389

Query: 912  E-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIK 967
                 L  +++ QIHDEL+FEV + +I   + ++  +ME        ++ L+VPLKV++ 
Sbjct: 1390 ATSRTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLS 1449

Query: 968  VSNNWQ 973
               +W 
Sbjct: 1450 AGRSWG 1455


>gi|332818964|ref|XP_001147379.2| PREDICTED: DNA polymerase nu isoform 3 [Pan troglodytes]
          Length = 1502

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 146/513 (28%), Positives = 266/513 (51%), Gaps = 34/513 (6%)

Query: 488  DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            D  + ++++D   ++     + +K+     K +  + K +      S + V ++  EN  
Sbjct: 950  DPRIAAWLIDPSDATPSFEDLVEKY---CEKSL--TVKVNSTYGNSSRNIVNQNVCENLK 1004

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
             + +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++ SA +   L 
Sbjct: 1005 TLYRLTMDLCSKLKDYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLK 1064

Query: 608  SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWKTTAQDLEQIN 661
             LE+  + ++GE+F + S  QL +ILF KLK        S  +T   ++ +T++ +    
Sbjct: 1065 ELEQEAHFVAGERFLIMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNAL 1124

Query: 662  CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TGRL++  PN+Q
Sbjct: 1125 RDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTGRLSAKHPNIQ 1182

Query: 722  NI-----PIKTDLGQKIRR----------AFISPPTKKLISADYSQIELRILAHIAKITP 766
             I      I T    K +            F+S      ++AD+SQIELRILAH++    
Sbjct: 1183 GISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELRILAHLSGDPE 1242

Query: 767  LYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
            L ++F+ S   D+   + ++   V +E+V+   R   K + ++++YG    RLA  L +P
Sbjct: 1243 LLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVP 1302

Query: 825  RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
              EAA +++ +  ++  I ++         Q G V +I GRR     I++    +R   E
Sbjct: 1303 VQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAE 1362

Query: 885  RAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
            R A+N  +QGSAAD+ + AMI V  ++   H L  +++ QIHDEL+FEV + +I   + +
Sbjct: 1363 RQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAAL 1422

Query: 944  IVHSMEK---ACLPKINLRVPLKVNIKVSNNWQ 973
            +  +ME        ++ L+VPLKV++    +W 
Sbjct: 1423 VRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 1455


>gi|330858981|emb|CBX69340.1| hypothetical protein YEW_IM36920 [Yersinia enterocolitica W22703]
          Length = 323

 Score =  362 bits (928), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 167/312 (53%), Gaps = 11/312 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G AV I + DKD+ QLV+P   L +T+    +  + V +K+G+PPE ++   
Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+++  N  +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS KL  ++TDV + I  + L +   +  +L       EF + +  V      D  
Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300

Query: 298 NIEPVVLDINTT 309
              P     N  
Sbjct: 301 KDRPTAQASNKA 312


>gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 656

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 159/657 (24%), Positives = 283/657 (43%), Gaps = 62/657 (9%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-- 424
           +Y  I +   I++++     +   +F   T   + +  +P A   +        SF V  
Sbjct: 3   NYRSITDMPSIRRYLA---GVSPVAFDFETAPDNEYRKEPKAALDAHKAHITGVSFSVTE 59

Query: 425 -ETIFIDLSVHTSQDSTGKNTLTKEILSYLKK-FFENEHFLKIGHNIKYDKLVLHRYGIS 482
            + I++ L+     +    + L     ++LK+  FE+   + I HN+ ++ + L++ GI 
Sbjct: 60  GDAIYVPLAHRVGVNCEDPDAL----WAFLKESIFESHDVICIAHNLSFEAMFLYKQGIV 115

Query: 483 MR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-------IDKIS 534
           ++    D +  + +  + +S  +   +    L      +  +   S          D+++
Sbjct: 116 VQEPCYDTIAAAQL--TMKSKWEFRGLHDSGLKLLATSLFGADMPSFSSVTDGRHFDEMN 173

Query: 535 DSQVQ--EHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             + +   +A  +S+  L L+          L   ++  + E+L+ P   +V  M+  GI
Sbjct: 174 PQEYETVRYACADSDYTLCLYYKFNNWFDRFLPAHRI--ITEQLESPTAVMVGCMKYNGI 231

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS---SPKQLGDILFTKLKFPSGAKT 645
            +D+  + +   E    + +L+  I +L+G   N+    S       L+  L  P   KT
Sbjct: 232 PVDRKAMLEKQTEAVAKVDALKAEINELTGG-VNIGANASTSAFKQYLYKDLGLPVLKKT 290

Query: 646 KTGQWKTTAQDL---EQINCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
           +  Q       +   E+      P    + + + E+R+  K+KSTY D   +H+N  T R
Sbjct: 291 EKNQEAADDAAMQLLEEYCAQHRPELVRLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGR 350

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +H       T TGR A+  PN+QN P KT+    IR   ++PP + ++S D+SQIELR+ 
Sbjct: 351 IHPDLMPLGTDTGRWAARNPNMQNAPRKTNDPIGIRNFIVAPPGQIIMSLDFSQIELRVG 410

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVS------PQMRRHAKTINFSIIYG 811
           A   +   + + + +  DIH    + +FGV  E  V        + R  AK  NF + YG
Sbjct: 411 AFYCRDPKMLETYRSGGDIHAQTTSVVFGVPFEVAVDKNAPNYKEHRTIAKNCNFGVFYG 470

Query: 812 ISPFRLATQLRI------PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           + P  L   LR             + I      + G+  + E+TK    +  Y ET  GR
Sbjct: 471 LFPRGLQKTLRFKAGLDTSFERCKEIIDNLKSGYSGLTTWQEETKARAAKTCYAETWMGR 530

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           R +   + S      +  ER A+N P+QG+AADI + A   +     +     K +LQIH
Sbjct: 531 RRYLPHMLSSDWGKHSFAERCALNTPVQGTAADILKAACARIVAGFPERPWL-KPILQIH 589

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN------WQEEN 976
           DELVF +PEE +  A Q +   ME+   P  +  VP+       ++      W+E  
Sbjct: 590 DELVFLLPEERLLEAQQFVKKCMEQQPYP--DFDVPIVAEASAGHSFGAMKEWEELG 644


>gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens]
          Length = 891

 Score =  360 bits (925), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 152/543 (27%), Positives = 274/543 (50%), Gaps = 45/543 (8%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLS 514
             I  N K + ++VL  +G       +  F   D  + ++++D   ++     + +K+  
Sbjct: 315 PVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY-- 372

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              K I  + K +      S + V ++  EN   + +L + L  KL    L  ++  L+ 
Sbjct: 373 -CEKSI--TVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL 429

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   IQ++++ +++ SA +   L  LE+  + ++GE+F ++S  QL +ILF
Sbjct: 430 PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREILF 489

Query: 635 TKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK        S  +T   ++ +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 490 GKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGL 549

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI-----PIKTDLGQKIRR-------- 735
              + K +  + + ++   T+TGRL++  PN+Q I      I T    K +         
Sbjct: 550 LACMKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISP 607

Query: 736 --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
              F+S      ++AD+SQIELRIL H++    L ++F+ S   D+   + ++   V +E
Sbjct: 608 RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVE 667

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + ++++YG    RLA  L +P  EAA +++ +  ++  I ++      
Sbjct: 668 QVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIA 727

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
              Q G V +I GRR     I++    +R   ER A+N  +QGSAAD+ + AMI V  ++
Sbjct: 728 QCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAV 787

Query: 912 -EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
              H L  +++ QIHDEL+FEV + +I   + ++  +ME          VPLKV++    
Sbjct: 788 AASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQ------VPLKVSLSAGR 841

Query: 971 NWQ 973
           +W 
Sbjct: 842 SWG 844


>gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
 gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
          Length = 642

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 163/659 (24%), Positives = 284/659 (43%), Gaps = 71/659 (10%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKII-------------TDTMDAFHSKPIAIAIST 413
           +Y  +    ++ +++  +      +F I                 +D      + I++S 
Sbjct: 3   NYKAVFTISEVMKYLN-IHDKKVVAFDIECAPKNEWFRLNEKKAALDPNKGHIVGISLSV 61

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF-FENEHFLKIGHNIKYD 472
            +           I+I L     ++          ++++LK F F NE  +K+ HNI ++
Sbjct: 62  KEGTG--------IYIPLRHRNGKNVED----VHRMIAWLKGFVFHNESLIKVAHNISFE 109

Query: 473 KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-- 529
              L  YGI ++    D ML S +  + +S  +  ++    L    KEI      S    
Sbjct: 110 SSFLCEYGIVIKEPVFDTMLGSML--TFKSFGEFRTLRDSGLKLLAKEIFNEDLPSFSHV 167

Query: 530 -----IDKISDS--QVQEHAIENSNVILQLW----LLLRPKLIVEKLLHVYERLDKPMID 578
                 D +     +   +A  +S+  L+L+          +   +L  V ER++ P   
Sbjct: 168 VNGTHFDNLHSEHKETVRYACADSDYALRLYNWCMEWFETYIPEHRL--VCERVESPAAV 225

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS---PKQLGDILFT 635
               M+  GI ++++LL++ +    + L   +  I   +  + NL S    +   D LF 
Sbjct: 226 YTGIMKKNGITLNKELLQEFNRRAEEELEFCKREILSFANREVNLGSNLQTQDFKDFLFK 285

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINC-------GDNPIIKNILEWRQLSKIKSTYADSL 688
            L+ P     + G      + L  +             +I+ I   +++SK+KSTY ++L
Sbjct: 286 DLRLPVLKICEKGDPSLDDESLILLEEWCIRNFKKGTYLIECIKRHKRVSKLKSTYIEAL 345

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
              +N  T ++HT +      TGR +S  PNLQN+P K +    IR+ FI  P    +  
Sbjct: 346 GKLLNCETGKIHTDFFSMGAETGRFSSRNPNLQNLPRKDNDHLGIRKLFIPSPNHVFLDF 405

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS-------PQMRRHA 801
           D+SQIELR+ A+  K   +   F    DIH +  + I+ + +E+ +        + R  A
Sbjct: 406 DFSQIELRVGAYYCKDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIA 465

Query: 802 KTINFSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           K  NF + +G+ P  L   L       I   +    I+     +P +  + + T      
Sbjct: 466 KNCNFGVFFGLFPKGLQKTLMYKGGINISEKDCERIIRNIKDGYPRLSTWQKDTVKVAAY 525

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GY  +  GRR +  ++ S   + R ++ER A+N PIQG+AADI + AM  + + L +  
Sbjct: 526 RGYTRSRTGRRRYLKDMKSKDWNKRAVSERCALNTPIQGTAADIIKIAMARILRELPERG 585

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              K LLQIHDEL+FEV E+++  A   I   ME+   P  +  +P+KV   V  N+ E
Sbjct: 586 Y-IKPLLQIHDELLFEVREDKVNEAIVFIKDCMER--TPFKDFNIPIKVEYSVGYNFDE 641


>gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 814

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 129/434 (29%), Positives = 228/434 (52%), Gaps = 5/434 (1%)

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKE 519
             K  H  K     L   G ++ G   D  L +Y++  G+ S  +  ++ ++L    R E
Sbjct: 375 KPKALHEAKAAVHDLAGRGWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE 434

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
             + ++ S+  D  +D++  +  I  +  ++ L   L  +L       +   ++ P+  V
Sbjct: 435 TPQQQQLSLLDDDDTDAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRV 494

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +++ME  GI +D  +L ++ ++    +    E  Y + G++ NL SPKQL  +LF +L  
Sbjct: 495 LAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGM 554

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P   +TKTG            +   +P ++++L  R ++++K T  D L   +     R+
Sbjct: 555 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADG-RI 612

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRIL 758
           HT ++     TGRL+S EPNLQNIPI+TD G++IR AF+      +L++ADYSQIE+RI+
Sbjct: 613 HTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIM 672

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++    L + F    D+H  VA+  FGV I++V+ ++RR  K +++ + YG+S + L+
Sbjct: 673 AHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLS 732

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            QL+I   EA + +  YF RF G+ +Y+       R++GY  T+ GRR +  E++S    
Sbjct: 733 QQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQ 792

Query: 879 IRNINERAAINAPI 892
           +R     +     +
Sbjct: 793 VREAATDSCACFFV 806



 Score =  316 bits (811), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 154/304 (50%), Gaps = 10/304 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            L+DG+S  +RAFYA P  + +   GL  NA+ GF  ML  LL++       +H A  FD
Sbjct: 1   MLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDE----APTHIAAAFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR + YP+YKANR   P+    Q+ + +    A GI  +   GFEADD+IAT   
Sbjct: 57  VSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLAT 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
            AE EG+ V +++ D+D +QLVS    +    K      +   E V++K+G+ P +    
Sbjct: 117 QAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  DN+PGIPG+G KTAA  + EYG+L +++ N   ++  K  + +     +   
Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRG-KVGDALRANLASVVR 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           +R+L  L  DVP+    + L L+  +   +      LEF  L +R+  T           
Sbjct: 236 NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFDTLAAAGGPEVDE 295

Query: 303 VLDI 306
             D+
Sbjct: 296 GFDV 299


>gi|153792006|ref|NP_001093496.1| DNA polymerase nu [Danio rerio]
 gi|108735435|gb|ABG00195.1| DNA polymerase nu [Danio rerio]
          Length = 1146

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 146/513 (28%), Positives = 253/513 (49%), Gaps = 36/513 (7%)

Query: 486  FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
              D  + +++LD   SS    ++  K  ++              +  + +       I N
Sbjct: 629  VMDPQIAAWLLDPADSSSCFQTLLSKHYTHQFTPT--------TLQPVLEQAKVTQVISN 680

Query: 546  SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             +++ +L   L  KL  + L  +Y  +++ MI V++ ME   + +D++ LK+ S  +   
Sbjct: 681  LSLLHKLMEELHYKLRTQGLWQLYSGIEQKMIPVLAAMESYKMHVDKEALKKTSEMLGSK 740

Query: 606  LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKTKTGQWKTTAQDLEQ 659
            L  LE+  +  +G+KF +SS  QL  ILF KL+           KT   Q  T+   L Q
Sbjct: 741  LKQLEQEAHQAAGQKFLVSSSAQLRLILFEKLRLHELCENKKLPKTVKQQQSTSETALLQ 800

Query: 660  INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
            +    +P+ K ILE+RQ+ KIK+T+ D + +   K    + + ++  ST++GRL++  PN
Sbjct: 801  LQ-KLHPLPKIILEYRQIHKIKTTFVDGILSCTRK--TFISSTWNQTSTVSGRLSAKHPN 857

Query: 720  LQNIP---------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
             Q +P                   +    R  FI       +SAD+ Q+ELR+LAH++  
Sbjct: 858  FQALPKLPLQISKKQYIHGKASDIVTVHPRAMFIPREGWTFLSADFCQVELRLLAHLSAD 917

Query: 765  TPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              L ++F++   D   M+AA+  GV+ ++VS + R  AK I +S++YG    RL+  L +
Sbjct: 918  PQLLRIFQSPEADAFTMLAAQWKGVSEDRVSLEDREQAKRIVYSVVYGAGRERLSGILGV 977

Query: 824  PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
               EA+ +   +   +  +  +I+ T    + +G+V +I GRR     I+S   S+RN  
Sbjct: 978  SAEEASRFQDSFLKTYREVPAFIQHTIQHCQSHGFVRSIMGRRRFLPHIHSADWSLRNQA 1037

Query: 884  ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
            ER A+N  +QGSAAD+ + AMI +   +       +++ QIHDEL+FEV   ++   + +
Sbjct: 1038 ERQAVNFVLQGSAADLAKLAMIRICSQVSSDSQTARLVAQIHDELLFEVEISQLDQFAAL 1097

Query: 944  IVHSME---KACLPKINLRVPLKVNIKVSNNWQ 973
            +  +ME         +NL VPLKV +    +W 
Sbjct: 1098 VKKTMESLQHIEYLNVNLSVPLKVLLSTGRSWG 1130


>gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 474

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 151/494 (30%), Positives = 248/494 (50%), Gaps = 32/494 (6%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE- 544
            +D  +++++ +  +       + +++L          ++  IP +KI D + +   +E 
Sbjct: 5   IQDTQILAFLKNPEKV--GFDEVLKEYL----------KEELIPHEKIKDFKAKAEKLEL 52

Query: 545 ---NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
                N + +L        + E LL +   ++ P + V+  ME  G +ID    K +  E
Sbjct: 53  LSVELNALKRLCEYFEKGGLEENLLSLAREVETPFVKVLMGMEFQGFKIDAPYFKCLEQE 112

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
               L  LE  I DL G  FNL+SPKQL ++L+ KL  P           +T +      
Sbjct: 113 FKNELHVLERQILDLIGVDFNLNSPKQLSEVLYEKLGLPKNKS------HSTDEKSLLKI 166

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              +P I  ILE+R+L+K+ +TY   L    +K  + +HT +    T TGRL+S  PNLQ
Sbjct: 167 LDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTTFIQTGTATGRLSSHSPNLQ 225

Query: 722 NIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           NIP+++  G  IR+ FI+      L+  DYSQIELR+LAH ++   L + F    DIH  
Sbjct: 226 NIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLE 285

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
            +  +FG ++   + + R  AK+INF ++YG+   +L+  L I  +EA  YI+ YF RFP
Sbjct: 286 TSKALFGGDL---AKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEAKSYIEAYFKRFP 342

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I +Y+ + K  + +     T+ GR   +D   +    I+    R  +NA  QGSA+D+ 
Sbjct: 343 SIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYIKGNYLREGVNAIFQGSASDLL 401

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      Q I   +         LRV
Sbjct: 402 KLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNALELQQEIQRIL---NDEVYPLRV 457

Query: 961 PLKVNIKVSNNWQE 974
           PL+ +  V+  W E
Sbjct: 458 PLETSAFVAKRWNE 471


>gi|168066269|ref|XP_001785063.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663356|gb|EDQ50124.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1683

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 160/680 (23%), Positives = 284/680 (41%), Gaps = 90/680 (13%)

Query: 377  IQQWVQKLETIGSASFKIITDTM-----DAFHSKPIAIAISTLDQKDDTSFKVETIFIDL 431
              +++++ + +   +F     T      D F  + + +AI   D        +  +    
Sbjct: 1003 FDEFLRRWQGVDEFAFDFYFRTPRKGLPDPF--EVMGVAICWKDSP-VYYVNLSIVHKSF 1059

Query: 432  SVHTSQDSTGKNTLTKEILSYLKK----------FFENEHFLKIGHNIKYDKLVLHRYGI 481
               T+ +   K  + +E+ S L +                  KI  ++K    VL+  G+
Sbjct: 1060 QHATNPNCGNKEVIIREVNSSLIESQTRWRHVGTMLSKTGVRKISWDLKIQLQVLNNPGL 1119

Query: 482  SMR--------------------------------GFEDIMLMSYVLDSGRSSHDIASIA 509
             +                                    D  + +++L     S  + S+ 
Sbjct: 1120 HVPSARQTTEHERGVPDVKAREGEVVALPSIRVQMPCIDTRVAAWLLWPDEESTRLLSLE 1179

Query: 510  QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            Q+       EI  +   +                     I  L       L+ E L    
Sbjct: 1180 QEVKKRLPGEIAAAAGRAGRWANQMGCVAHNGCCRRVAQIWVLHCAFWKLLVAEGLHEAL 1239

Query: 570  ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             +L+ P++ V++ ME   + +D  + ++  + +   L  LE     L+G  F+LS+P ++
Sbjct: 1240 LQLEMPLVRVLADMETWSLGLDMRVCRKAQSHLHCKLRELEAQGEKLAGMSFSLSAPAEV 1299

Query: 630  GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
              +L+  LK P     K     +T +   +     +PI   I E R LSK+  +   S+ 
Sbjct: 1300 AHVLYRHLKLPVPPGCKGKHHPSTDKQALEFLRNHHPIADIIKEHRSLSKLLQSTLGSII 1359

Query: 690  NHIN--------------KRTQRVHTFYSLASTMTGRLASLEPNLQNIPI---------K 726
                                   +   +   ST TGRL+  +PNLQ +           +
Sbjct: 1360 AWAKSPEPLFSSQERSSRGEIFSIAGHWLQTSTATGRLSMEDPNLQCVEHAVSFTIEGGR 1419

Query: 727  TDLGQKI----------RRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFEN-S 774
            +  G +           R+AF+       L+SADYSQIELR++AH +    L  +  + +
Sbjct: 1420 SLDGDQEKANNVVEVNARQAFVPSQEGWILLSADYSQIELRLMAHFSGDPSLVSLLSHPT 1479

Query: 775  LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
             D+ R++AA+  G+ + +VS + R   K + + I+YG+    LA  L  P +EA   ++R
Sbjct: 1480 GDLFRVLAAQWTGLPMCEVSDKQRERTKRLVYGILYGMGVNTLAEHLECPVAEAQVMLER 1539

Query: 835  YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
            +   FP +  ++    +  RQ GY+ T+ GR+ + D+IN+ K   +   ER A+N+  QG
Sbjct: 1540 FKGTFPLVTTWLSHAVDSCRQKGYITTLSGRKRYLDKINTGKWGEQAKAERQAVNSICQG 1599

Query: 895  SAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
            SAAD+ + AMI VH ++   H+ + ++LLQIHDEL+ EV +  +   +QI+  SME A  
Sbjct: 1600 SAADLIKLAMIKVHDAISSSHQGSCRLLLQIHDELLLEVDKRVLKHVAQILRSSMEGA-- 1657

Query: 954  PKINLRVPLKVNIKVSNNWQ 973
              I LRVPL+  ++V  +W 
Sbjct: 1658 --ITLRVPLRTKLQVGTSWG 1675


>gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum]
 gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum]
          Length = 1588

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 144/618 (23%), Positives = 280/618 (45%), Gaps = 56/618 (9%)

Query: 373  NTKDIQQWVQKLETIGSASFKIITDTM--DAFHSKPIAIAISTLDQKDD---------TS 421
                 Q+ +  LET+   +  ++ D+   +   +  +A+A ++   K            S
Sbjct: 1005 TPVKKQRTIFNLETVDVCAHDLLFDSFRHEIKSANLVALAFASCPTKQGRTIGLNHTIKS 1064

Query: 422  FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
             +V      L    S          +E +  ++     +    I +N K     LH+ +G
Sbjct: 1065 PEVPISGFALFWGHSTAYYLDVAKKRETIDLIRHIVNEQQKTIIMYNCKQQIKTLHKWHG 1124

Query: 481  ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
            +  R    D  +  ++L        +  + + +               +P+D+  D+++ 
Sbjct: 1125 VEFRSRVHDPKVADWLLQPEGQDKTLHQLVETYCPE------------LPLDQGQDAKL- 1171

Query: 540  EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
              +I    +   +   +  +L    LL V++  +  ++ +++ +E+ GI  +   L  + 
Sbjct: 1172 -RSIFECYLSWHVLKNIEVELSKSNLLTVFDT-EMSIMRILANIELAGIGANVSTLSNLV 1229

Query: 600  AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              +++ L ++E   + ++G  F+ +S +QL  IL                 ++     + 
Sbjct: 1230 DLLTRELKAIERQGHAIAGRHFSFASSRQLAKIL-----------------QSDNNSKKS 1272

Query: 660  INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
            +   DNP+   IL+WR++S         L   +     R+   Y    T TGR+   EPN
Sbjct: 1273 LQKNDNPLASLILKWRKISATIGKTLQPLIRLV--ENGRIFGCYVTH-TATGRITMHEPN 1329

Query: 720  LQNIPIKTDL---GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            LQN+    D+       R+AF+      ++SAD+ Q+ELR+LAH+++   L  +     D
Sbjct: 1330 LQNVAKDFDIDGVEVSCRKAFVPSQGHVMVSADFCQLELRVLAHLSRDEVLGGILRRKGD 1389

Query: 777  IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
            I R +AA+   ++  +V+ ++R+ AK I + IIYG+    LA QL    ++A  +++ + 
Sbjct: 1390 IFRAIAAKWNNISENEVTEELRQRAKQIIYGIIYGMGSKALAEQLNTDEAQATRFMQTFR 1449

Query: 837  HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            + +PG+ +YI +     R+ G+VET+ GRR     IN    ++++  ER A+N  IQGSA
Sbjct: 1450 NAYPGVQKYISEIIETCRKTGFVETLAGRRRFLAHINHKNGAVKSQAERQAVNTTIQGSA 1509

Query: 897  ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
            AD+ + AM+ +       K   K++L +HDEL++EVPE  + +  +I+   ME      +
Sbjct: 1510 ADLVKMAMVRLETVFLGEK-EVKLVLHLHDELLYEVPEGSLGSFVRILKTEME----GSV 1564

Query: 957  NLRVPLKVNIKVSNNWQE 974
             L +P  V +K   +W +
Sbjct: 1565 KLSIPFPVKVKSGPSWGQ 1582


>gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus]
          Length = 848

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 142/546 (26%), Positives = 257/546 (47%), Gaps = 60/546 (10%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLS 514
             +  N K + + VL  YG       +  F   D  + ++++D   ++     +  K L 
Sbjct: 316 PVVCFNAKDFVRTVLQLYGEDDSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDLVAKHLE 375

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +      + K S    + S + + ++   N  ++  L + L  KL    L  ++  L+ 
Sbjct: 376 KSI-----TVKPSSTFREASRNTLSQNVCMNLKILYDLTMDLCSKLKAYGLWQLFCTLEL 430

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   I +D++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF
Sbjct: 431 PLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILF 490

Query: 635 TKLKF------PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK           +T      +T++ +       +P+ K ILE+RQ S          
Sbjct: 491 GKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQGS---------- 540

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ-------------NIPIKTDLGQKIRR 735
                     + + ++   T+TGRL++  PN+Q             N   K +    I  
Sbjct: 541 ----------ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISP 590

Query: 736 --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
              F+S      ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   + IE
Sbjct: 591 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 650

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + +S++YG    RLA  L +   EA  +++R+  ++  I ++ +    
Sbjct: 651 RVTHMDREQTKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIG 710

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
                GYV +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++
Sbjct: 711 QCHSAGYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAV 770

Query: 912 EDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIK 967
                L  +++ QIHDEL+FEV + ++   + ++   ME        ++ L+VPLKVN+ 
Sbjct: 771 ATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLS 830

Query: 968 VSNNWQ 973
           V  +W 
Sbjct: 831 VGRSWG 836


>gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1]
 gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1]
          Length = 925

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 160/655 (24%), Positives = 287/655 (43%), Gaps = 89/655 (13%)

Query: 397 DTMDAF----HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            T++A+      K + I +S                I L  H      G    T  I+ +
Sbjct: 230 TTLEAYPMSQQPKIVGIGLSDRSGYGCA--------IPL-YHRENLMPGNQIGT--IVKF 278

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRG-FEDIMLMSYV-LDSGRSSHDIASIA 509
           L+K  E E    I HN K+D   L     I +     D ML+ Y+ +   + +H +  +A
Sbjct: 279 LRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDTLIWDTMLIHYLCITEEKGTHGLKDLA 338

Query: 510 --QKWLSYTRKEILK---SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-E 563
             +  +      +       +     D I    ++ +  ++ +V  +L     P +   E
Sbjct: 339 WLETDMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLADDCDVTFRLSEKYIPLVEENE 398

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------- 616
           +   ++E +  P    +  +E+ GI +D++ L+ +     K +  LE+ + +        
Sbjct: 399 EKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSYEKEISRLEDKMREFPEVVAME 458

Query: 617 ---------------------------------------SGEKFNLSSPKQLGDILFTKL 637
                                                   G+K N  S KQLG++LF ++
Sbjct: 459 REMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSKGGDKINFGSTKQLGELLFERM 518

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
              +   T  G    T  D  +     +  +K ++E+R+ + + + +   L   I+    
Sbjct: 519 GLETVIFTDKGAPS-TNDDSLKFMGSQSDFVKVLMEFRKANHLYNNFVSKLSLMIDPDNI 577

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIK------TDLGQKIRRAFISP--PTKKLISAD 749
            VH  Y++  T+TGRL+S EPN Q  P K           +I++ F S       ++  D
Sbjct: 578 -VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPTLFQYNFEIKKMFNSRFGDGGVIVQFD 636

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQ+ELRILA I +   L  ++ +  D+H+ VA++ FGV IE+VS   R  +K I F I+
Sbjct: 637 YSQLELRILAVITQDPTLIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIV 696

Query: 810 YGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           Y  S   L+  LR     +   E   +IK+YF RFP + ++I  TK  V+++ YV+T+ G
Sbjct: 697 YQESARGLSEDLRAEGITMSEDECEIFIKKYFKRFPKVSKWIRDTKKHVKRHKYVKTLTG 756

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           R  +  +I+S   S  N  ER A+N PIQG+ +D T  ++I +++ L +  L +++ + +
Sbjct: 757 RTRNLPDIDSIDQSKANEAERQAVNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITV 816

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKAC----LPKINLRVPLKVNIKVSNNWQEE 975
           HD +V + P++E+   ++ + H ME         K    VP+   +++  N+ + 
Sbjct: 817 HDSIVLDCPKDEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNYGDA 871


>gi|260794541|ref|XP_002592267.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
 gi|229277483|gb|EEN48278.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
          Length = 595

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 141/580 (24%), Positives = 253/580 (43%), Gaps = 75/580 (12%)

Query: 466 GHNIKYDKLVLHR-YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
             ++K     L     I+M G F+D  +  ++LD          + +   +    ++L+ 
Sbjct: 14  VFDLKAQYKALAAGCDITMNGNFQDPKVADWLLDPDAKVKRFDEMVKGQFTPQESDLLQG 73

Query: 524 -----RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
                 + S+ +   +    Q  A         L + L   L  + L   +  ++ P + 
Sbjct: 74  LRECFGEGSLSMTVQNAGSGQTRAALECVFTFHLMVKLSKLLEEQGLSTAFRNVEMPSLV 133

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
            ++++E+ G   + +  +     +   L  LEE  + L+G  F L+S K +  +L+ + K
Sbjct: 134 ALARLELNGAGFNPEECETQCQVMKDRLRMLEERAHKLAGHTFALNSTKAVDKVLYEEKK 193

Query: 639 FPSGAKTKTGQWKT------TAQDLEQINCGD--NPIIKNILEWRQLSKIKSTYADSLPN 690
                   T               LE++      +P+   IL+W+ +S + +        
Sbjct: 194 LEINEDPSTNSQPQERLSTSRKGVLEKLKTSHPLHPLPGVILKWKHISNLLNKVTPLQKK 253

Query: 691 HINKRTQRVHTFYSLA--STMTGRLASLEPNLQNIPIKTDLGQK---------------- 732
           ++      +   YS     T TGR+A  +PNLQ IP + ++                   
Sbjct: 254 NVYNPRLNMDRIYSTCNLHTATGRVAFHDPNLQFIPKEFEIEMPTDTNNEDGPPAAGEET 313

Query: 733 -------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
                  +R AFI      +++ADYSQ+E+RI+AH++K + L Q   +  D+ + +A++ 
Sbjct: 314 MSKRKVCMRHAFIPFKGGVILAADYSQLEVRIMAHLSKDSKLTQALNSGQDVFKAIASQW 373

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
            GV +E VS ++R+ AK + + IIYG+ P  L  +L + + E    I+ +   + GI  Y
Sbjct: 374 KGVAVEHVSDKLRQQAKQLYYGIIYGMGPKTLGEKLGVSKEEGKRRIETFKSSYTGIQRY 433

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
            + T +  ++NGYV+T+  RR +  +IN       +  ER A N  IQGSAAD+ ++AM+
Sbjct: 434 RQTTVDQCKRNGYVQTMAERRRYLPDINGEDYYKLSQAERQAFNTTIQGSAADLVKKAMV 493

Query: 906 SVHKSLEDHKLATK-------------------------------MLLQIHDELVFEVPE 934
            + + L+     T+                               ++LQ+HDEL++EV E
Sbjct: 494 LIDQRLQQEFPDTRRSHRHGESTAAAADTDKRRSQQPSSPPRGAYLILQLHDELIYEVHE 553

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           E+    +QI+ H MEKA      L V L V +KV   W +
Sbjct: 554 EDEQKVAQIVKHKMEKAM----ELSVELPVKVKVGPTWGQ 589


>gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 370

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 147/372 (39%), Positives = 226/372 (60%), Gaps = 13/372 (3%)

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE------QINC 662
           L+ +IY L+  +FN+ SP+QLG++LF KL+ PSG KTKTG + T  + LE      ++  
Sbjct: 2   LQSDIYKLADGEFNIDSPQQLGEVLFEKLQIPSGKKTKTG-YSTNVEVLEMIANNRELTE 60

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
               I K +LE+R   K+ STY + +P   +K  +R+HT ++   T TGRL+S  PNLQN
Sbjct: 61  DKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKE-ERIHTTFNQNGTSTGRLSSANPNLQN 119

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP++TD G +IR  F++     LIS DYSQIELR+LA ++K   L + ++++ D+H + A
Sbjct: 120 IPVRTDDGIRIRTGFVAKEGHSLISFDYSQIELRVLAELSKDRHLVKAYQDNQDLHDLTA 179

Query: 783 AEIF-GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            +IF     +++S   R  AK INFSI+YG +PF L+ +L I   EA+ YI  YF  +P 
Sbjct: 180 RKIFFKTEEDEISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITTYFEEYPR 239

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + ++++      + +G+VET +G R +   IN+   +I+    R A+N  +QG+AA+I +
Sbjct: 240 VRKFLDIVTETAKLHGFVETFYGTRRYISGINATNKNIQAQAVRMAVNTVVQGTAANIIK 299

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           + MI +H+  ++ +   KMLLQ+HDEL+FEV +E      + I   ME     K   +VP
Sbjct: 300 KVMIELHEEFKNDE-NIKMLLQVHDELIFEVRDEFAKEYMKKIEKIMENTVKFK---KVP 355

Query: 962 LKVNIKVSNNWQ 973
           LK N  V+ NW 
Sbjct: 356 LKANGSVAKNWG 367


>gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis]
          Length = 1711

 Score =  347 bits (889), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 156/683 (22%), Positives = 292/683 (42%), Gaps = 72/683 (10%)

Query: 332  SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQ--QWVQKLETIGS 389
            +S +D   +  +    Q    +     +   +      K+ N    +   +         
Sbjct: 1054 TSFNDSVDQQKASPDMQVRKPKIPSWYTNIELKPGEKYKVFNIDHEKLSDFFHIWANETK 1113

Query: 390  ASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
             +F +           K + +++                ++D+ +  ++  +        
Sbjct: 1114 FAFSVNVQTCTSEKDPKLVGLSLCWSP--------TVVYYLDIQILKTRHPS-------- 1157

Query: 449  ILSYLKKFFE--NEHFLKIGHNIKYDKLVLHR---YGISM-RGFEDIMLMSYVLDSGRSS 502
            ++  ++  FE  +E  ++I   IK     +     +G++    ++D M+ S+++D     
Sbjct: 1158 VIEDIQNIFESFDEDVIQIAFCIKDQFKWMLNSGVHGVTTSNNWQDPMIASWLMDPDNIK 1217

Query: 503  HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV--QEHAIENSNVILQLWLLLRPKL 560
              + S+ + + S     + +  K    +++ S + V  ++     S     L L L  +L
Sbjct: 1218 QGLFSLVEHYCSEHL-YLFQDTKYDWDVNRPSYTSVSSEKVCCVESIASYILMLQLEEQL 1276

Query: 561  IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
                +   +  ++ P +  V+ +E+ GI++D  LLK+   E+    L+L+E  + + G K
Sbjct: 1277 SGMNMWQHFTGVEMPHMYCVALLELNGIEVDNSLLKRYRLELHSASLALQEKAWKILGRK 1336

Query: 621  FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
            FNLS+PK++  +LF +L+                                I+ WR ++  
Sbjct: 1337 FNLSNPKEVSKVLFQELRLXXXXXXXXXXXXXXXXXY-----------PCIMSWRTVNYA 1385

Query: 681  KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP------------IKTD 728
             +     L N +     R+H    L  T TGR+   EPN+Q+IP              ++
Sbjct: 1386 LNKVI-LLINSLPPSCGRLH-HKCLTLTNTGRMIMSEPNIQSIPKQFSITKGSKSEADSE 1443

Query: 729  LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFG 787
                +R  F++   K LISADYSQIELRILAH++    L   F +  +DI + +AA  + 
Sbjct: 1444 QSFCLRNIFVAGNGKLLISADYSQIELRILAHLSGDETLIAAFNSSGVDIFKSIAAMFYS 1503

Query: 788  V--NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
               +I+ V+ + R   K   + I+YG+    LA Q+    ++A + +  + + +P +  Y
Sbjct: 1504 EISSIDDVTDKQRDTTKQTCYGILYGMGAQTLAQQMNTSETDAQNAMDSFMNSYPMVKVY 1563

Query: 846  IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
              +     ++ GY+ETI GRR +  EI S +  +R+  ER A+N+ IQGSAADI + A  
Sbjct: 1564 FNRLVAQCKEKGYIETISGRRRYLPEIKSVRLKMRSHAERQAVNSTIQGSAADIVKMATY 1623

Query: 906  SVHKSLEDHKLAT------------KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
             +H ++      T             ++  IHDEL++EV E+++  A  +I   M  A  
Sbjct: 1624 KIHCAVASLGWNTLHQNTRSNTTDFFLVHHIHDELIYEVDEKKLHEAVSVIERCMVDA-- 1681

Query: 954  PKINLRVPLKVNIKVSNNWQEEN 976
                + V L V IKV   W + N
Sbjct: 1682 --FPMSVKLAVRIKVGKLWGDLN 1702


>gi|153840365|ref|ZP_01993032.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149745970|gb|EDM57100.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 323

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 165/312 (52%), Gaps = 11/312 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L L+DGSS++YRAF+A P      + +P NA+ G  NML  +++    E      AV
Sbjct: 6   ENPLILIDGSSYLYRAFHAYPGTMSNGE-IPTNAVYGVVNMLRSMMRQFASER----IAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E+Y +YKANRP +P+ L  Q+  +    +A G+P I + G EADD+I T
Sbjct: 61  VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y A ++G  V I + DKD+ QLV     L +T+    +D E V++K+GIPPE ++   
Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD +DNIPG+PG+G KTA  LLQ  G L  +  N   I        K   + +++  
Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           + A LS +L  ++ DV +    E L+  + N   LI     L F   +N +         
Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNELLEGSSGTVE 300

Query: 298 NIEPVVLDINTT 309
            +E   L  +  
Sbjct: 301 AVELAALRKHHH 312


>gi|222055465|ref|YP_002537827.1| Ribonuclease H [Geobacter sp. FRC-32]
 gi|221564754|gb|ACM20726.1| Ribonuclease H [Geobacter sp. FRC-32]
          Length = 480

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 127/285 (44%), Positives = 179/285 (62%), Gaps = 6/285 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L+L+DGSS+IYRA+Y    L+    G+P NA+ GF  ML  LLQ +R +    +
Sbjct: 1   MNQPPQLYLLDGSSYIYRAYYGIRDLAT-SGGMPTNAVFGFTRMLLTLLQENRPD----Y 55

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+FD P   TFR EIYP YKA+R  +PE L+PQ+P +R   QA  IPA+E  GFEADD
Sbjct: 56  VAVVFDPPREDTFRREIYPPYKAHRDAMPEDLVPQIPYIRKMVQALNIPALEAPGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT       EG  VT+++ DKDL+Q+V     L DT+ E +   E V+ ++G+ PE++
Sbjct: 116 VIATLARRFAAEGIQVTVVTGDKDLLQIVGEGIGLLDTMNERRSGTEEVLDRFGVTPEQV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             +  L GD+ DNIPG+PGIG KTAA L++++G+LE +L   S +  K RREN+   A+ 
Sbjct: 176 ADVLGLAGDTADNIPGVPGIGEKTAAKLVRQFGSLEGVLEWKSLVSGKARRENLHACADQ 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           ARLS++L  +R DVP+ + L  L     + P L+  L+ L F  L
Sbjct: 236 ARLSKRLATVRYDVPLQVSLVDLQRRTPDLPVLVPLLRELGFAAL 280


>gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
 gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
          Length = 744

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 150/623 (24%), Positives = 274/623 (43%), Gaps = 43/623 (6%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            ++Y  I + K + ++V  LE      F + T  +D ++   +   I+ +          
Sbjct: 112 PENYWLITDEKRLAEFVALLENEEEIVFDVETTGVDVWNDYIVGHVITAIKADVHAYIPT 171

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
                         +         +   L+ F+E+    K+ HN K+D  +L R GI +R
Sbjct: 172 RH-----------KTILPQLSRDLVNETLRPFYEDPTVGKLAHNAKFDIHMLDREGIKLR 220

Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHA 542
           G   D      +L+    S  + ++  K+L              I  D++ D ++   +A
Sbjct: 221 GLTWDTQEAMRLLNENEPSFALKNLVTKYLRI-ESSTYGDLFGKIGFDEVDDLEIALAYA 279

Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            ++ +V L+L    R  L    ++L  YE ++ P+I VV QME TG  ID D  ++   E
Sbjct: 280 AKDGDVTLKLRNFQREHLAKMPEVLRYYETVEVPLISVVQQMETTGFDIDLDYAEEYGRE 339

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           +   L  L + + +  G+  N++SP QL   L           T      T A+ + +  
Sbjct: 340 LKSGLDRLYDELIEELGD-VNINSPAQLKPAL--------ERVTGESLASTDAKKVLKPL 390

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS--LEPN 719
               P++K +LE++   K+ STY ++LP  I+++T +++T ++     TGR +S     N
Sbjct: 391 AKKYPVVKKLLEYKDSFKLYSTYINALPELIDQKTGKLYTNFNPNGAKTGRFSSGGTGVN 450

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQN P K       R+ F++P    ++  D+SQ E R LA+  +   L   +    D++ 
Sbjct: 451 LQNQPKKA------RKLFVAPEGYAILGGDWSQQEYRCLAYFTQDPKLVDNYFRGDDLYA 504

Query: 780 MVAAEIFGVNIEKV--SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
            +AAE+FG  IE+       R+ AK I  ++ YG     L   + + + EA  ++  +F 
Sbjct: 505 SIAAEVFGKPIEECGDGSVYRKQAKVIMLAVAYGGGANMLKDAIGVEKHEAQKFLDSFFE 564

Query: 838 RFPGIHEYIEKTKNFVRQNGYVET-IFGRRIHYDEINSPK-SSIRNINERAAINAPIQGS 895
           RFP + E++E  + FV+++G+V      R+    +          +     + NA +QGS
Sbjct: 565 RFPVVKEWVESNQKFVKKHGFVWMDHLQRKRRLPDAKDRSAKGHYSAVFTQSTNARVQGS 624

Query: 896 AADITRRAMISV----HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           AA  T+  MI++     +   + +   ++   +HDE +  VP+       +     M   
Sbjct: 625 AAIQTKATMIALQELCDRKTAEGRGEWRLWCVVHDEALLLVPDTLTQQDVKDFEDVMVNT 684

Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974
            +      +P K +I++S  W E
Sbjct: 685 YVFG---NIPNKTDIEISRRWGE 704


>gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 642

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 153/650 (23%), Positives = 266/650 (40%), Gaps = 68/650 (10%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITD-----------TMDAFHSKPIAIAISTLDQ 416
           Y  +   + I+ ++   E     +F   T             +D   +  +  A S  ++
Sbjct: 6   YKCVTTVQGIRDYLGDAE---IIAFDFETAPDEAYRAEEKAALDPARAHIVGCAFSASER 62

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                     I++ ++        G N        +L     N H  K+ HNI ++  + 
Sbjct: 63  TG--------IYVPVAHKI-----GANIDRTAFFLFLADLLANPHITKVAHNIAFESSMA 109

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR-------KSSI 528
           +  GI ++    D +  + +  + RS+++   + +  L +   E+L+             
Sbjct: 110 YARGIVIQPPVYDTIAAAQM--TSRSAYEFRRLNESGLKHLAGELLEESLPTFAETTGGK 167

Query: 529 PIDKIS--DSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERLDKPMIDVVSQME 584
             D++   D +   +   +++  L+L+          + +   + E ++ P    +  M+
Sbjct: 168 HFDELPAQDKETVRYGAADADFSLRLYHTFNGWFDRYLPRHRWIVEHMESPTAIYLGVMK 227

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS---SPKQLGDILFTKLKFPS 641
             G+ IDQ L+++  AE    +  + + I  L G+  N+    S       LF     P 
Sbjct: 228 NNGVPIDQSLMQKRKAESEMEMERIRQEITFLIGD-VNIGANCSTADFKKYLFESQGLPV 286

Query: 642 GAKTKTGQWKTTA-------QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
              T   Q            +  E+      P+ K + E+R+  KI+STY D     +N 
Sbjct: 287 LKVTNKSQAALDDMAMVLLGEWCEEHKPELVPLFKLVQEYRRWGKIQSTYIDGYLKFLNP 346

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            T+R+H      ST TGR+   +PN QN+P K++    +R    +P    ++S D+SQIE
Sbjct: 347 VTKRLHPDIFALSTDTGRMNCRKPNCQNMPRKSNDPIGVRNFIKAPSGHLILSLDFSQIE 406

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-------SPQMRRHAKTINFS 807
           LR+ A   +   + + +    DIH      IFGV  E+          + R  AK +NF 
Sbjct: 407 LRVGAFYCRDERMMETYRAGGDIHAATTCVIFGVTDEEAQDKHRADYKERRTIAKNVNFG 466

Query: 808 IIYGISPFRLATQLRI------PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
             YG+ P  L   L+          E    I      +  +  + E+TK    +  Y ET
Sbjct: 467 TFYGLFPRGLQNTLKFKAGVEKTLPECESVIANLKAGYRELSTWQEETKVQAARRLYSET 526

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
             GRR +  +I S + + ++  ER A+N PIQG+AADI + A++ + K L D     K +
Sbjct: 527 WLGRRRYLPDIRSKEWARKSFAERCALNTPIQGTAADILKLAIVRILKGLPDRPWL-KPI 585

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           LQIHDEL F +P   +  A   I   ME+   P+ +L  PL        N
Sbjct: 586 LQIHDELTFIIPAGRLDEAVAFIRACMEEQPFPEFDL--PLIAKASAGEN 633


>gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 2147

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 167/684 (24%), Positives = 290/684 (42%), Gaps = 91/684 (13%)

Query: 377  IQQWVQKLETIGSASFKIITDTMDAFHS----KPIAIAISTLDQKDDTSFKVETIFIDLS 432
               +++  E+ G   F +  + +   +S    +   IAI             + +     
Sbjct: 1460 FDSFLELWESAGEFFFDLHYNKLQDLNSRISYEIHGIAICWNSSPVYYVNLNKDLPNLEC 1519

Query: 433  VHTSQDSTGKNTLTKEILS-------------YLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            V   +          E+L+              + K   N +  K   N+K    VL   
Sbjct: 1520 VEKQKLIEDAVVGKNEVLATHNMFDVIKSRWNKISKIMGNVNTRKFTWNLKVQIQVLKSP 1579

Query: 480  GISMR---------GFEDIML--MSYVLDSG-RSSHDIASIAQKWLSYTRKE------IL 521
             IS++         G  D+ L   S+++    R+SH I      W+ +  +E      I 
Sbjct: 1580 AISIQRCNRLNLAEGIRDLELVDGSWLMMPPLRTSHTIDMSIVTWILWPDEERHSNPNID 1639

Query: 522  KSRKSSIPIDKISDS------------QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            K  K  +  +    +                           L   L   L+ E+LL   
Sbjct: 1640 KEVKKRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRALCSALWKILVSEELLEAL 1699

Query: 570  ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
               + P+++V++ ME+ GI +D +   +    +   L SLE+  ++L+G  F+L +P  +
Sbjct: 1700 TTTEMPLVNVLADMELWGIGVDIEGCLRARNILRDKLRSLEKKAFELAGMTFSLHNPADI 1759

Query: 630  GDILFTKLKFPSGAKTKTGQWKT-TAQDLEQINCGDNPIIKNILEWRQLSKIKSTY---A 685
             ++LF +LK P       G+    T +    +   ++P++  I E R L+K+ +      
Sbjct: 1760 ANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSI 1819

Query: 686  DSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNLQNI---------------PIKTDL 729
             SL    ++ +   +H  +   ST TGRL+  EPNLQ++                   D 
Sbjct: 1820 CSLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPNLQSVEHEVEFILDKNGKDVNSDADS 1879

Query: 730  GQKIRRAFISP--PTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIF 786
             +   R F  P      L++ADYSQIELR++AH ++ + L         D+  M+AA+  
Sbjct: 1880 YKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISQLRQPEGDVFTMIAAKWT 1939

Query: 787  GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
            G     VSP  R   K + + I+YG+   RLA QL     EA + I+ +   FP +  ++
Sbjct: 1940 GKAEGSVSPHDRDQTKRLIYGILYGMGANRLAEQLECSSDEAKEKIRSFKSSFPAVTSWL 1999

Query: 847  EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
             +T +F ++ GY++T+ GRR    +I    +  ++  +R A+N+  QGSAADI + AMI+
Sbjct: 2000 NETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAADIIKIAMIN 2059

Query: 907  VHKSLEDH-----------------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            ++ ++ +                  K   ++LLQ+HDELV EV    +  A+ ++  SME
Sbjct: 2060 IYSAIAEDVDTTASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKVAAMLLQTSME 2119

Query: 950  KACLPKINLRVPLKVNIKVSNNWQ 973
             A    ++L VPL V +KV   W 
Sbjct: 2120 NA----VSLLVPLHVKLKVGKTWG 2139


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 167/633 (26%), Positives = 293/633 (46%), Gaps = 59/633 (9%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
              P +   Y  I N+  + + +  L           T  +D    +   I I+      
Sbjct: 6   PNTPAHVVQYELIANSSKLSEILSPLMKARVIGIDTETTGLDPLTERIRLIQIA------ 59

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             + +   I +DL+            L    LS LK    N   LK+  N K+D  VL  
Sbjct: 60  --APQHPVIIVDLAA-----------LADSELSPLKALL-NSSALKVFQNGKFDWQVLEM 105

Query: 479 YGISMRG-FEDIMLMSYVLDSG-RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            G+   G F D+ML S VL SG +  HD+ S+  ++L      + KS +SS    K+S S
Sbjct: 106 AGLRPSGPFFDVMLASQVLRSGLKKDHDLQSLTFEFLGIK---LDKSLQSSNFAGKLSAS 162

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           Q+ E+A  ++ V+L+L   L  KL    LL    +++   +  V+QME+ G+ +D +   
Sbjct: 163 QL-EYAALDAAVLLKLRARLHSKLRSAGLLETA-KIEFAAMPAVAQMELNGMLLDVEQWH 220

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK---------- 646
            V  E+       +  + +L       +   QL   LF  +      ++           
Sbjct: 221 LVGEELK---AQKQATLVELVKAGLKPAPSAQLS--LFPDMVETINPRSSVQVLSALQAL 275

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
               K+T++          P+I+ +L +R+L+ + S +A++LP HI++ T R+H  Y   
Sbjct: 276 NIPIKSTSKSELIPIARQYPVIQLLLNYRKLASLCSNFAEALPKHIHQITGRIHPSYRQC 335

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              +GR +  +PNLQN+P    + + +R  FI+PP  ++I ADYSQIELRI+A I+    
Sbjct: 336 GARSGRFSCKQPNLQNVPRNCTV-KGMRACFIAPPGYQIIKADYSQIELRIVAEISGDAK 394

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQ 820
           +   +    D+H + A+ I G  +E+V+ + RR AK++NF +IYG+   +L         
Sbjct: 395 MLDAYVKGEDLHTLTASLITGKLLEEVTTEDRRIAKSVNFGLIYGMGAAKLQAYAEEKYD 454

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           + +   EA ++ KR+F  + G+  + +  +  V    YV+ I   R             R
Sbjct: 455 VLLTLEEAKEFRKRFFQAYSGVKRWHDSIRRTV----YVKDIKQIRTIGGRRRRWAKKPR 510

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
                  +N P+QG++AD+ + A+  + K L       K++  +HDE++ E P+  +   
Sbjct: 511 ---LSELLNHPVQGTSADMLKVAIARLFKLLPKTG--AKLIAVVHDEILLECPQTTLKRT 565

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           S I+   M +A    +  +VP++V +K++++W 
Sbjct: 566 SCILKKVMVEAGELYLQ-QVPVEVEVKIASSWA 597


>gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii]
          Length = 1585

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 133/446 (29%), Positives = 234/446 (52%), Gaps = 29/446 (6%)

Query: 555  LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            L  P      L  ++  L+ P+I +++ ME   IQ++++ +++ SA +   L  LE+  +
Sbjct: 1095 LFLPIKQGYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH 1154

Query: 615  DLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPII 668
             ++GE F ++S  QL +ILF KLK        S  +T   ++ +T++ +       +P+ 
Sbjct: 1155 FVAGEPFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDFHPLP 1214

Query: 669  KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--- 725
            K ILE+RQ+ KIKST+ D L     K +  + + ++   T+TGRL++  PN+Q I     
Sbjct: 1215 KIILEYRQVHKIKSTFVDGLLACTKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPI 1272

Query: 726  ------------KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
                           L    R  F+S      ++AD+SQIELRILAH++    L ++F+ 
Sbjct: 1273 QITTPKNFKGKEDKTLTISPRAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQE 1332

Query: 774  SL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +   D+   + ++   V +E+V+   R   K + ++++YG    RLA  L +P  EAA +
Sbjct: 1333 AERDDVFSTLTSQWKDVPMEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPVQEAAQF 1392

Query: 832  IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            ++ +  ++  I ++         Q GYV +I GRR     I++    +R   ER A+N  
Sbjct: 1393 LESFLQKYKKIKDFARAAIAQCHQTGYVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFV 1452

Query: 892  IQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            +QGSAAD+ + AMI V  ++   + L  +++ QIHDEL+FEV + +I   + ++  +ME 
Sbjct: 1453 VQGSAADLCKLAMIHVFTAVAASRTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMES 1512

Query: 951  ---ACLPKINLRVPLKVNIKVSNNWQ 973
                   ++ L+VPLKV++    +W 
Sbjct: 1513 LEQVQALELQLQVPLKVSLSAGRSWG 1538


>gi|225022624|ref|ZP_03711816.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944532|gb|EEG25741.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 893

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 160/640 (25%), Positives = 253/640 (39%), Gaps = 102/640 (15%)

Query: 15  FIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFR 73
             +RAFYA P        G   NAI GF +ML  LL + +     +H AV FD    TFR
Sbjct: 1   MAFRAFYALPTEKFTTSTGQATNAIYGFLSMLATLLHDEQ----PTHVAVAFDVGRTTFR 56

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
            E++PDYKA R + P   + Q+P+++    A GI  IE   +EADDIIAT    A+  GF
Sbjct: 57  TEMFPDYKAQRDETPPEFISQIPILKNLLTALGITTIEKPNYEADDIIATLATTAQPLGF 116

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
              I++ D+D +QLV+ TT +   +K      +   + V  K+G+ PE+     AL GD 
Sbjct: 117 ETLIVTGDRDSLQLVNNTTTVLYPMKGVSVIHRFTPQAVQDKYGLTPEQYPDFAALRGDP 176

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            DN+P IP +G KTA   + ++GNL N+L NA  IK      N+ E              
Sbjct: 177 SDNLPSIPKVGEKTATKWIVQHGNLTNLLNNADTIKG-VVGTNLRE-------------- 221

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
                             +  +L   L  +     +            N E +  D N  
Sbjct: 222 ----------------RIDQVKLNRQLTEMVKNLDLTHTPPELKLQPVNTETLTEDFNNL 265

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
           E                                   T +   L+                
Sbjct: 266 EFGT--------------------------------TLRTKILKARGVTVDTTATPPQTP 293

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
             V+T  + +W+++  T             +A           T    D  SF +    I
Sbjct: 294 TTVDTISVAKWLKQHPT-------------EAMAVHITGRG--TPATGDAESFAI----I 334

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-ED 488
           D + H    +        +    L  + ++    K  H+ K    +L   GI++ G   D
Sbjct: 335 DQNHHAIAGNFADLNPKDD--KALADYLQS-TQPKFLHDAKTTYHMLAGRGITLGGIAHD 391

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +Y+L+ G+ ++D+ +  Q+ L +   EI ++ + S+      D       I  +  
Sbjct: 392 TALAAYLLNPGQRTYDLKTTYQRHL-HRTLEITETGQLSL-----LDITNTNTLITAAAA 445

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           IL+L   L  KL     L +Y  L+ P+  ++++ME TGI +D   L++     +  +  
Sbjct: 446 ILELAATLPTKLATINELELYLDLELPLTTILAEMEATGIAVDIPTLEEQLDTFTNLVTQ 505

Query: 609 LEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKT 647
            E     ++G+    L+SPKQL  +LF  L  P   K + 
Sbjct: 506 EETAARTIAGDPNLLLTSPKQLQVVLFETLGLPKTKKNQN 545


>gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50]
          Length = 263

 Score =  343 bits (881), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 127/267 (47%), Positives = 181/267 (67%), Gaps = 4/267 (1%)

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L  
Sbjct: 1   TGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLT 60

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
            F    DIHR  AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA 
Sbjct: 61  AFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQ 120

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
            Y+  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S   + R   ERAAIN
Sbjct: 121 KYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAIN 180

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           AP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME
Sbjct: 181 APMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLME 240

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
                   L VPL V +    NW + +
Sbjct: 241 NCT----RLDVPLLVEVGSGENWDQAH 263


>gi|145334203|ref|NP_001078482.1| DNA-directed DNA polymerase family protein [Arabidopsis thaliana]
 gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis
            thaliana]
 gi|332660705|gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana]
          Length = 2154

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 162/683 (23%), Positives = 292/683 (42%), Gaps = 90/683 (13%)

Query: 377  IQQWVQKLETIGSASFKIITDTMDAFHS----KPIAIAISTLDQKDDTSFKVETIFIDLS 432
               +++   + G   F +  + +   +S    +   IAI             + +     
Sbjct: 1468 FDSFLELWGSAGEFFFDLHYNKLQDLNSRISYEIHGIAICWNCSPVYYVNLNKDLPNLEC 1527

Query: 433  VHTSQDSTGKNTLTKEILS-------------YLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            V   +          E+L+              + K   N +  K   N+K    VL   
Sbjct: 1528 VEKQKLIEDAVIGKSEVLASHNMLDVIKSRWNKISKIMGNVNTRKFTWNLKVQIQVLKSP 1587

Query: 480  GISMR---------GFEDIML-MSYVLDSG-RSSHDIASIAQKWLSYTRKE------ILK 522
             IS++         G  D ++  S+++     +SH I      W+ +  +E      I K
Sbjct: 1588 AISIQRCTRLNLPEGIRDELVDGSWLMMPPLHTSHTIDMSIVIWILWPDEERHSNPNIDK 1647

Query: 523  SRKSSIPIDKISDS------------QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
              K  +  +    +                           L   L   L+ E+LL    
Sbjct: 1648 EVKKRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRALCSALWKILVSEELLQALT 1707

Query: 571  RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
             ++ P+++V++ ME+ GI ID +   +    +   L SLE+  ++L+G  F+L +P  + 
Sbjct: 1708 TIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKAFELAGMTFSLHNPADIA 1767

Query: 631  DILFTKLKFPSGAKTKTGQWKT-TAQDLEQINCGDNPIIKNILEWRQLSKIKSTY---AD 686
            ++LF +LK P       G+    T +    +   ++P++  I E R L+K+ +       
Sbjct: 1768 NVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSIC 1827

Query: 687  SLPNH-INKRTQRVHTFYSLASTMTGRLA---------------SLEPNLQNIPIKTDLG 730
            SL    ++ +   +H  +   ST TGRL+                L+ N +++    D  
Sbjct: 1828 SLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPNLQSVEHEVEFKLDKNGRDVSSDADRY 1887

Query: 731  QKIRRAFISP--PTKKLISADYSQIELRILAHIAKITPLY-QVFENSLDIHRMVAAEIFG 787
            +   R F  P      L++ADYSQIELR++AH ++ + L  ++ +   D+  M+AA+  G
Sbjct: 1888 KINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTG 1947

Query: 788  VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
               + VSP  R   K + + I+YG+   RLA QL     EA + I+ +   FP +  ++ 
Sbjct: 1948 KAEDSVSPHDRDQTKRLIYGILYGMGANRLAEQLECTSDEAKEKIRSFKSSFPAVTSWLN 2007

Query: 848  KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
            +T +F ++ GY++T+ GRR    +I    +  ++  +R A+N+  QGSAADI + AMI++
Sbjct: 2008 ETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAADIIKIAMINI 2067

Query: 908  HKSLEDH-----------------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            + ++ +                  K   ++LLQ+HDELV EV    +  A+ ++  SME 
Sbjct: 2068 YSAIAEDVDTAASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAMLLQTSMEN 2127

Query: 951  ACLPKINLRVPLKVNIKVSNNWQ 973
            A    ++L VPL V +KV   W 
Sbjct: 2128 A----VSLLVPLHVKLKVGKTWG 2146


>gi|195450899|ref|XP_002072681.1| GK13557 [Drosophila willistoni]
 gi|194168766|gb|EDW83667.1| GK13557 [Drosophila willistoni]
          Length = 2080

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 160/594 (26%), Positives = 284/594 (47%), Gaps = 62/594 (10%)

Query: 409  IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            ++    D            ++++     +++ G     +E    L K         I H+
Sbjct: 1513 LSFCLADNV--------AYYMNMQQEGKKEAVGTQLKVEE----LVKLLTRPELTLIMHD 1560

Query: 469  IKYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGR--SSHDIASIAQKWLSYTR--KE 519
             K    +L         I+++  ED  + +++L   +  S H++    Q++    +   +
Sbjct: 1561 GKEQLKILRHAMPQLVRIAIK-LEDPKVANWLLQPDKVLSFHNM---CQQFAPECKGLTD 1616

Query: 520  ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL-----RPKLIVEKLLHVYERLDK 574
            +  S +        + + +      +    + + +L        ++   +LL  +  L+ 
Sbjct: 1617 LCGSGRGYSSYGLDASNAILPKIRASVEACVSMHILHGQIENLERIGTGQLLKFFRDLEM 1676

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P+   +  ME TG    Q+ L+ +S ++   +  LE  IY+L G +FNL S + +  +L 
Sbjct: 1677 PIQLSLCNMEFTGFPAKQESLQGLSQQMLSTMKKLEAKIYELHGSRFNLGSSQAVAKVLG 1736

Query: 635  TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
               K        +G+  T+ Q LE++   D+PI + I+ +R+LS + +     L      
Sbjct: 1737 LHRKA-------SGKVSTSRQILEKL---DSPISQLIVGYRKLSTVLAKNVQPLLKCC-- 1784

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK-------IRRAFISPPTKK-LI 746
            +  RV+   SL+ T TGR++  EPNLQN+    ++           R AF+    K+ LI
Sbjct: 1785 QDNRVYG-QSLSYTATGRISMSEPNLQNVAKDFEINLDSDKVNISCRSAFLPMDFKRCLI 1843

Query: 747  SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +N  +VS  +R   K I +
Sbjct: 1844 SADFCQLEMRILAHLSQDPALLEVMNSPRDLFTAIAARWNHMNESEVSENLRNGTKQICY 1903

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
             I+YG+    LA  L+   +EA    +++   + GI  YI+K   F R NGYVETI GRR
Sbjct: 1904 GIVYGMGMRSLAESLKCTENEAQTVSEQFHQTYAGISAYIQKVVKFARNNGYVETITGRR 1963

Query: 867  IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-------TK 919
             + + INS +  I+N  ER AIN+ IQGSAADI + A++ + K L  ++           
Sbjct: 1964 RYLEHINSGELQIKNQAERQAINSTIQGSAADIAKSAILRMEKHLLRYRERLGITENSVN 2023

Query: 920  MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            ++L +HDEL+FEVP ++    ++++  +ME      + L VPLKV +K+  +W 
Sbjct: 2024 LVLHLHDELIFEVPIDKAKKIAKVLSLTMESC----VKLSVPLKVKLKIGRSWG 2073


>gi|77920454|ref|YP_358269.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77546537|gb|ABA90099.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 480

 Score =  342 bits (878), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 151/468 (32%), Positives = 226/468 (48%), Gaps = 18/468 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L+L+DGSS+IYRAFY    ++   DG+P NA+ GF  ML  LLQ    +    +
Sbjct: 1   MNPSPQLYLLDGSSYIYRAFYGIRDVATA-DGMPTNAVFGFTRMLLNLLQEHSPD----Y 55

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+FD P   TFR EIY +YKA+R  +P+ L PQ+P +R   QA  IPA+E  GFEADD
Sbjct: 56  LAVVFDRPREETFRREIYSEYKAHRDAMPDELAPQIPYIRQILQALNIPALEAPGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT       +G  VT+++ DKDLMQ+V     L DT+K+ +   + V +++G+PPE +
Sbjct: 116 VIATLGRRHAADGLQVTVVTGDKDLMQIVGDRIELLDTMKDTRSGAQQVFERFGVPPELV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             +  L GD+ DNIPG+PG+G KTA+ L+Q +G+LE +L   S +  KKRR N+  YAE 
Sbjct: 176 ADVLGLAGDTSDNIPGVPGVGEKTASELVQRFGSLEGVLKWTSLVNGKKRRSNLETYAEQ 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           ARLS+ L  LR DVP+ I L  L     N   LI  L+ LEF  L       +     N+
Sbjct: 236 ARLSKTLATLRDDVPLEISLADLQRRKPNLAELIPLLRELEFEAL----EIAFTPPPPNV 291

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             +  D +  ++        +      K  + S      +    E       LE L K  
Sbjct: 292 VEIYSDGSGRDSGPGGYGVILRYGEHEK--ELSGFEPAATSQRMELLAAIRGLEALNKPQ 349

Query: 360 QYPINNDSYTKIVNTKDIQQ-WV--QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +  + +DS   +         W+   +LET G+ + + +   + A   +     +S    
Sbjct: 350 KVRVFSDSQYLVRGMSQWMHGWIRDDRLETPGALANQDLWQQLLALSKQ---HEVSWEWV 406

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
           +             L+    ++   K     +  +   +        K
Sbjct: 407 RGHAGHPFNERCDKLAKQAVEEGLQKTAEVSQPEAMATEELPRPVQPK 454


>gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens]
          Length = 579

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 137/454 (30%), Positives = 237/454 (52%), Gaps = 32/454 (7%)

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           EN   + +L + L  KL    L  ++  L+ P+I +++ ME   IQ++++ +++ SA + 
Sbjct: 32  ENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLG 91

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWKTTAQDL 657
             L  LE+  + ++GE+F ++S  QL +ILF KLK        S  +T   ++ +T  + 
Sbjct: 92  ARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTVSEA 151

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                  +P+ K ILE+RQ+ KIKST+ D L   + K +  + + ++   T+TGRL++  
Sbjct: 152 LNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTGRLSAKH 209

Query: 718 PNLQNI-----PIKTDLGQKIRR----------AFISPPTKKLISADYSQIELRILAHIA 762
           PN+Q I      I T    K +            F+S      ++AD+SQIELRIL H++
Sbjct: 210 PNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELRILTHLS 269

Query: 763 KITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
               L ++F+ S   D+   + ++   V +E+V+   R   K + ++++YG    RLA  
Sbjct: 270 GDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC 329

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L +P  EAA +++ +  ++  I ++         Q G V +I GRR     I++    +R
Sbjct: 330 LGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLR 389

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITT 939
              ER A+N  +QGSAAD+ + AMI V  ++   H L  +++ QIHDEL+FEV + +I  
Sbjct: 390 AQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPE 449

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            + ++  +ME          VPLKV++    +W 
Sbjct: 450 CAALVRRTMESLEQ------VPLKVSLSAGRSWG 477


>gi|195113811|ref|XP_002001461.1| GI21961 [Drosophila mojavensis]
 gi|193918055|gb|EDW16922.1| GI21961 [Drosophila mojavensis]
          Length = 2181

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 159/597 (26%), Positives = 270/597 (45%), Gaps = 56/597 (9%)

Query: 406  PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
               IA    D            ++++     Q    +   ++  +  L      +    +
Sbjct: 1607 LAGIAFCLNDNV--------VYYMNMQPEEEQQQQQQQVGSELKVQQLSSLLSRQDLTLL 1658

Query: 466  GHNIKYDKLVLHRYGISMRGF----EDIMLMSYVLDSGR--SSHDIASIAQKWLSYT--R 517
             H+ K    VL +    +       ED  + +++L   +  S H++    Q++       
Sbjct: 1659 SHDAKEQLKVLRQAVPQLNDIQVLLEDPKVANWLLQPDKTLSFHNM---CQQFAPECGAL 1715

Query: 518  KEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERL 572
              +  S +  SS  +D  S    +  A   + V + +       L       LL  +  L
Sbjct: 1716 ANLCGSGRGYSSFGLDASSAIMAKVRASIEACVTVHILNGQLENLERIGTGQLLKFFREL 1775

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            + P+   +  ME  G    +  L+++  ++   +  LE  IY+L G +FNL S + +  +
Sbjct: 1776 EMPIQMSLCHMECIGFPAKEHSLQRLFQQMMATMKRLESKIYELHGSRFNLGSTQAVAKV 1835

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            L   L   +  +  T +          +   D+PI + IL +R+LS + +     L    
Sbjct: 1836 L--GLHRKANGRVSTSRQI--------LEKIDSPISQLILNYRKLSMLLAKSMQPLLKCC 1885

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI-------KTDLGQKIRRAFIS-PPTKK 744
              +  RVH   S+  T TGR++  EPNLQN+         K  L    R AF      + 
Sbjct: 1886 --QANRVHG-QSITYTATGRISMSEPNLQNVAKDFHIELGKEQLKISCRSAFAPMDEKRC 1942

Query: 745  LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            LISAD+ Q+E+RILAH+++   L QV  ++ D+   +AA    ++   VS Q+R   K I
Sbjct: 1943 LISADFCQLEMRILAHLSQDKALLQVMNSTQDLFTAIAAHWNKIDESNVSEQLRNGTKQI 2002

Query: 805  NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
             + I+YG+    L+  L+    EA    +++   +PGI  Y  K   F R NGYVETI G
Sbjct: 2003 CYGIVYGMGMRSLSEALKCTEQEAQMITEQFHLAYPGIKAYTMKVVKFARNNGYVETITG 2062

Query: 865  RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA------- 917
            RR + D INS +  ++   ER AIN+ IQGSAADI + A++ + K+L  ++         
Sbjct: 2063 RRRYLDHINSGEVQLKTQAERQAINSTIQGSAADIAKSAILRMEKNLGRYREKLGLAKNA 2122

Query: 918  TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ++L +HDEL+FEVP ++    ++++  +ME      + L VPL+V +K+  +W E
Sbjct: 2123 VNLVLHLHDELIFEVPTDKAKKVAKVLSLTMENC----VKLNVPLRVKLKIGRSWGE 2175


>gi|213580148|ref|ZP_03361974.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 281

 Score =  341 bits (875), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 155/281 (55%), Gaps = 11/281 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+PPE ++   
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237
           AL GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  
Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           + A LS KL  ++TDV + +  E L ++      L+   K 
Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKK 281


>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
          Length = 1855

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 170/705 (24%), Positives = 289/705 (40%), Gaps = 116/705 (16%)

Query: 2    QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            Q  NH+ ++DG+   Y+A+     L+  H+G P+ A+ GF   L K+L+  + +    + 
Sbjct: 773  QNNNHVVIIDGTPLAYKAYNTISGLT--HNGEPIGALFGFTKALLKILKELKPD----YV 826

Query: 62   AVIFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             V FD    A  FR++IY  YKANRP  P  L  QLPL+     A GI   +   FE+DD
Sbjct: 827  LVCFDPTDGAGNFRHDIYEKYKANRPSTPLDLKQQLPLLPQVCTALGIEYAKQSRFESDD 886

Query: 120  IIATYTYIAEKEG---------------------FAVTIISTDKDLMQLVSPTTCLYDTV 158
            +IATY  I E+                       +  TI+S DKD++QLVS    +Y+T 
Sbjct: 887  LIATYANIVEQANKKLAAGNDNLVVDGQQQQQQKYRATIVSDDKDMLQLVSDDVHIYNTR 946

Query: 159  KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
                   + VI K G+P   +   QAL GDS+DNIPG+P +G K+A+ ++   G+++N+L
Sbjct: 947  TNSIFCHQDVIDKMGVPSHLITSFQALAGDSVDNIPGVPSLGPKSASAIINSLGHIDNVL 1006

Query: 219  INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
             N  +I   K RE +   +E  ++S +L  L       +PLE L     N  + + FL  
Sbjct: 1007 ANIEQI-PLKFREKVRNNSEQIKISYQLATLSKQAETKVPLEGLKWNPVNKLQFVEFLDK 1065

Query: 279  LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
              F  +  ++                     +N G+  E E       +  + S  S  +
Sbjct: 1066 YNFNNIKGKL---------------------DNLGLVYEGE-------ENKEISQSSSSS 1097

Query: 339  SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
            S  +S  T    ++   +++  Y  N+      VNT +  + +                 
Sbjct: 1098 SSSSSAYTIDPDYVLTDEEVKDYLPND---VTCVNTVEHAREIDVYHAC-----DTEVID 1149

Query: 399  MDAFHSKPIA----IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
            +D     PI     I  S     D        I++D+                EIL   K
Sbjct: 1150 IDVKEQSPIGHGKIICFSIYCGPDIDFGTGSRIWVDILGSNG----------DEILQIFK 1199

Query: 455  KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG---RSSHDIASIAQ 510
            ++FE+E   K+ HN  +D+ V + + I + GF  D MLM+ + D+    R  + +  + +
Sbjct: 1200 EYFEDESIFKVWHNYAFDRHVFYNHNIDVVGFGGDTMLMARLWDASRMMRGGYSLEGLTK 1259

Query: 511  KWLSYT---RKEILKSRKSSI-----------PIDKIS-----DSQVQEHAIENSNVILQ 551
              L        ++    K              P++ +       ++  E++  ++ V   
Sbjct: 1260 DLLDKHKTNMDDLFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTKWIEYSSRDAEVTWM 1319

Query: 552  LWLLLRPKLIVE-------KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            L   L  KL+          +   Y  + +P   +++ ME  G+++D + LK V     +
Sbjct: 1320 LRENLHKKLMTMEWIGPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKGVEVIAQR 1379

Query: 605  NLLSLEENIYDLSG------EKFNLSSPKQLGDILFTKLKFPSGA 643
            ++    EN    +       +  N+ S  Q+   LF   +     
Sbjct: 1380 DITEHNENFRRWALGYCENVKHMNIDSDAQVQQFLFAPCRNVKTK 1424



 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 100/331 (30%), Positives = 151/331 (45%), Gaps = 27/331 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            I ++LE   +  + S++   L    +    R+HT  ++ +T TGRL+S  PNLQN P   
Sbjct: 1528 IASLLEVGSIGTLISSFIIPLQRLAD-SNHRLHTSVNV-NTETGRLSSRRPNLQNQPALE 1585

Query: 728  DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                KIR+AF   P   L+ ADY Q+ELR+L HI     +   F    D H   A  ++ 
Sbjct: 1586 KDRYKIRKAFTCEPGNTLVVADYGQLELRLLGHITNCKSMLDAFRVGGDFHSRTAMGMYP 1645

Query: 788  VNIEKVSP-----------------------QMRRHAKTINFSIIYGISPFRLATQLRIP 824
                 V                           RR AKT+NFSI YG +   L+    + 
Sbjct: 1646 HVRAAVDAGEVLLEWDGEGAPPKPLLKDKFASERRKAKTLNFSIAYGKTAHGLSKDWNVT 1705

Query: 825  RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             SEA + + R++   P +  +   T     Q  +  T+ GR     +I+S        +E
Sbjct: 1706 LSEAQNTLNRWYEDRPEVLLWQRSTIQIAHQKKWTRTLMGRYRLLPDIDSKARGFVGHSE 1765

Query: 885  RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
            RA+IN P+QG AADI  +AM+ + +     +L  ++++QIHDEL+ E PEE    A  I+
Sbjct: 1766 RASINTPLQGGAADIVMKAMLIIEQDARLKELGYRLIMQIHDELILEGPEEHAPEARDIV 1825

Query: 945  VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +  M         L V L V+ + +  W E 
Sbjct: 1826 IKLMGNPLNK--PLLVDLVVDCRFAKTWYEA 1854


>gi|293571802|ref|ZP_06682818.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608056|gb|EFF37362.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 280

 Score =  340 bits (872), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 130/280 (46%), Positives = 176/280 (62%), Gaps = 6/280 (2%)

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIE 754
             +VHT Y    T TGRL+S++PNLQNIPI+ D G+KIR+AF+       + S+DYSQIE
Sbjct: 5   DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 64

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGIS 813
           LR+LAHI+    L   F    DIH   A  +FG+   E V+P MRR AK +NF I+YGIS
Sbjct: 65  LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 124

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
            + L+  L I R  A  YI  YF ++PG+ EY+E+     +  GYVET++ RR +  +IN
Sbjct: 125 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 184

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S   +IR+  ER AIN PIQGSAADI + AMI + K L++  L   MLLQ+HDELVFEVP
Sbjct: 185 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 244

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           E+E+ +  +++   ME+A    ++L VPL  +      W 
Sbjct: 245 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWY 280


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 148/666 (22%), Positives = 280/666 (42%), Gaps = 71/666 (10%)

Query: 369 TKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
             I   + +++++   +   G     + T  +D ++   + I +      D  S  V   
Sbjct: 64  EVIRTPERLKEFMDTYVNGYGEYVLDVETTGLDIYNDILVGICLY---NPDLPSAYVPFN 120

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRG- 485
             DL     +         +E  + +  +  N+    I HNIK+D  ++   +G  +   
Sbjct: 121 HTDLQNRRVEG----QMTEEECKAVMLPYLANKDLKCINHNIKFDDKMITFNWGQRIANV 176

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           + D  + S+VL+     H +  +  K++       E        IP + I       +  
Sbjct: 177 WWDTNIASWVLNENE-KHGLKPLYNKYILNGEGSDEDFGDLFEGIPCNYIPIEIFSIYGA 235

Query: 544 ENSNVILQLWLLLRPKLIVE-------KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            +      L+   +  L  E       KL  V+  ++ P+IDV   ME+ G++I +D  K
Sbjct: 236 NDGFKTWALYQFQKQYLNPEAKRADYRKLYDVFMNVEMPLIDVCMDMELRGVEIREDYAK 295

Query: 597 QVSAEISKNLLS-----------LEENIYDLSGE--------KFNLSSPKQLGDILFTKL 637
           ++S + ++ +              EE I + +          K N +SP+Q+  +L+   
Sbjct: 296 ELSVKFNEEMQEKEALCDAYVREFEEYIKENATLMRLTKGTCKINYNSPQQMACLLYDIF 355

Query: 638 KF-------PSGAKTKTGQWKTTAQDLEQINCGDN--PIIKNILEWRQLSKIKSTYADSL 688
           +        P G   K  Q             G+     + N   +++  K+  TY D +
Sbjct: 356 QLKSVSRKEPRGTGDKIIQMHRNKAKKAGTKKGERFIEFLDNYQRYKECGKLLGTYIDKI 415

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEP----NLQNIPIKTDLGQKIRRAFISPPTKK 744
           P    ++T  VHT ++    +TGR +S +     NLQNIP        IR+ F +    K
Sbjct: 416 PAVKCEKTNAVHTTFNQYGAVTGRFSSSDTVTKINLQNIPSHEK---SIRKIFKARDGYK 472

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK---------VSP 795
           L+  D+SQIE R+LA+ +    +   ++   D++ ++ ++++GV  E          V+P
Sbjct: 473 LVGGDFSQIEPRVLAYFSGDEAMQNAYKEGKDLYAIMGSKVYGVPYEDCREFYPDGTVNP 532

Query: 796 Q---MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           +    R   K++   I+Y      +  Q       A   I  ++  FP + +   K +  
Sbjct: 533 EGKHRRTTMKSVLLGIMYERGAQAIGEQFDKSAQWAQKLIDDFYKSFPKVQQLRLKIEKT 592

Query: 853 VRQNGYVETIFGRRIHYDEINSPKS--SIRNINERAAINAPIQGSAADITRRAMISVHKS 910
             + GYV TI GR+    ++              R ++N+ IQGS+ADI + AMI +++ 
Sbjct: 593 AEEYGYVTTIKGRKRRLPDMQLSNHDDYRYAEAHRQSLNSVIQGSSADIMKLAMIEIYRD 652

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
               +L   M++ +HDEL+ EVPE  +   ++++V +M++     I+L  P+ V+ +V+ 
Sbjct: 653 PRYKELDCHMIITVHDELIMEVPEANVKVGAELLVSTMKRVGHSLIDL--PMSVDAEVNE 710

Query: 971 NWQEEN 976
            W  EN
Sbjct: 711 YWYGEN 716


>gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
 gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
          Length = 787

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 170/675 (25%), Positives = 305/675 (45%), Gaps = 93/675 (13%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGS-----ASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
            ++Y  + NT +  +WV  L           +    T  ++ +  + + ++++      +
Sbjct: 120 PENYHTV-NTHEGMEWVLSLFEDSYALGAEVALDTETTGVE-WWDRTVGLSLTFEFGDVE 177

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
            +F +              S  +      ++  LK   E +    + HN K+D  +L + 
Sbjct: 178 ENFYIPYGHT---------SDHEQLTRGYVMKKLKPHLEKKGTKLVLHNSKFDSHMLLKD 228

Query: 480 GISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKI 533
           GI++R   + D M+   VL+       + +IA K+  +   E          S+ P    
Sbjct: 229 GITIRNNIYFDTMIAHSVLNENDEK-GLKAIATKYGRFFGFEDKSMSFGELFSNKPEAFY 287

Query: 534 SDSQVQE---HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589
           S+  ++    +A +++++ L+L+      +  + KL  VY   ++P+   V  ME TG +
Sbjct: 288 SNESMELCTFYACKDTHLCLKLYKWQLSMMKKQPKLYDVYFNYEQPLTPAVLAMEETGFE 347

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           ID         E+   +  LE+ +    GE  NL+SP QL  +L+ +LK P      +G+
Sbjct: 348 IDFSFADMYKTELQAEVSDLEQKMTRRFGE-INLNSPAQLSALLYDELKLPDI----SGK 402

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            K  A+ L+++   ++ + K ILE+R L+K+ +TY + LP  +NK T ++H+ ++ ++T+
Sbjct: 403 RKADAKTLQKLVKHESDL-KLILEYRDLNKLLTTYVEPLPEKVNKNTGKLHSSFNQSATV 461

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           T R AS +PNLQN      L  K R+  ++P    +   DYSQIE R LAH++    L  
Sbjct: 462 TSRFASKDPNLQN------LPPKARKLIVAPKGYLIFGIDYSQIEPRTLAHMSGDAGLQY 515

Query: 770 VFENSLDIHRMVAAEIFGVNIEKV-------------SPQMRRHAKTINFSIIYGISPFR 816
            + N++D++  +A++IF +  E                   R+  K    +++YGI+   
Sbjct: 516 PYLNNIDLYASLASKIFKLPYEACLEADGETYKKAGLPKHPRKMMKVGLLAVMYGITVPS 575

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI--------- 867
           LA  L I   EA  ++  ++  +P +  ++ K      + GYVET+ GR+          
Sbjct: 576 LAESLGISVPEAQKFMDDFYSSYPEMTAWMAKQVAHADETGYVETMQGRKRRFIGHTVIA 635

Query: 868 -HYDEINSPKSSIRNINE---------------------------RAAINAPIQGSAADI 899
            HY  +++   +I                                R ++NA IQGSAA +
Sbjct: 636 KHYHALHAKVVNILGREPENIWREPLPRNLKKQYWEVNKDYQRVARMSVNAIIQGSAALM 695

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            ++AMI+V+  LE      KM+  IHDEL+F +PE         I + M+      + L 
Sbjct: 696 LKKAMIAVNAHLERKGAGWKMMATIHDELLFLIPEAVTPEEIIEIENIMKDV----VKLD 751

Query: 960 VPLKVNIKVSNNWQE 974
           VPLKV+ +V   W E
Sbjct: 752 VPLKVDTEVMIRWGE 766


>gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium rectale DSM 17629]
          Length = 724

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 151/671 (22%), Positives = 277/671 (41%), Gaps = 71/671 (10%)

Query: 364 NNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
               Y  I   + +++ ++  L  +      + T  +D ++   + I +      D  SF
Sbjct: 58  AEGEYEIIRTPERLKEVMETYLTGVSEYVLDVETTGLDVYNDILVGICLY---NPDLPSF 114

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGI 481
            V     DL     +         +E  + +  +  N     I HNIK+D  V+  ++G 
Sbjct: 115 YVPFNHTDLQNKRVEG----QMTEEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQ 170

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQV 538
            +   + D  +  +VL+     H +  +  K++       E        IP + I     
Sbjct: 171 RIANVWWDTNIAGWVLNENE-KHRLKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIF 229

Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-------KLLHVYERLDKPMIDVVSQMEITGIQID 591
             +   +      L+   +  L  +       KL HV+  ++ P+IDV   ME+ G++I 
Sbjct: 230 AIYGANDGFKTWALYQFQKKYLREDHPRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIR 289

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGE-------------------KFNLSSPKQLGDI 632
           +D  K++S + +  +   E+   +   +                   K N +SP+Q+  +
Sbjct: 290 EDYAKELSVKFNAEMAEKEKLCDEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACL 349

Query: 633 LFTKLKF-------PSGAKTKTGQWKTTAQDLEQINCGDNPI--IKNILEWRQLSKIKST 683
            +   K        P G   K  Q             G+  I  + N   +++  K+  T
Sbjct: 350 FYDIFKLKSVSRKEPRGTGDKIVQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGKLLGT 409

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP----NLQNIPIKTDLGQKIRRAFIS 739
           Y D +P     +T  VHT Y+     TGR +S +     NLQNIP        IR+ F +
Sbjct: 410 YIDKIPEVKCAKTNAVHTTYNQYGAKTGRFSSSDTVTKINLQNIPSHEK---SIRKIFRA 466

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV------ 793
               K +  D+SQIE R+L++++    + + +    D++ ++ ++++GV  E        
Sbjct: 467 RDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYEDCREFYPD 526

Query: 794 ------SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
                     R   K++   I+Y      +  Q       A   I  ++  FP I +   
Sbjct: 527 GTVNAEGKHRRTTMKSVLLGIMYERGAKAIGEQFDKSAEWAQKLIDDFYKSFPKIQQLRL 586

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKS--SIRNINERAAINAPIQGSAADITRRAMI 905
           K +    + GYV TI GR+    E+  P           R ++NA IQGS+ADI + AMI
Sbjct: 587 KVEKMAEEYGYVTTIQGRKRRLPEMQLPDHDDYRYQEAHRQSLNAVIQGSSADIMKLAMI 646

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +++   +   L   M++ +HDEL+ EVPE+ I   + ++V++M++     I+L  P+ V+
Sbjct: 647 AIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVNTMKRVGHSLIDL--PMSVD 704

Query: 966 IKVSNNWQEEN 976
            +V++ W  EN
Sbjct: 705 AEVNDYWYGEN 715


>gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 724

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 150/671 (22%), Positives = 276/671 (41%), Gaps = 71/671 (10%)

Query: 364 NNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
               Y  I   + +++ ++  L  +      + T  +D ++   + I +      D  SF
Sbjct: 58  AEGEYEIIRTPERLKEVMETYLTGVSEYVLDVETTGLDVYNDILVGICLY---NPDLPSF 114

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGI 481
            V     DL     +         +E  + +  +  N     I HNIK+D  V+  ++G 
Sbjct: 115 YVPFNHTDLQNKRVEG----QMTEEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQ 170

Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQV 538
            +   + D  +  +VL+     H +  +  K++       E        IP + I     
Sbjct: 171 RIANVWWDTNIAGWVLNENE-KHGLKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIF 229

Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-------KLLHVYERLDKPMIDVVSQMEITGIQID 591
             +   +      L+   +  L  +       KL HV+  ++ P+IDV   ME+ G++I 
Sbjct: 230 AIYGANDGFKTWALYQFQKKYLREDHPRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIR 289

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGE-------------------KFNLSSPKQLGDI 632
           +D  K++S + +  +   E+   +   +                   K N +SP+Q+  +
Sbjct: 290 EDYAKELSVKFNAEMAEKEKLCDEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACL 349

Query: 633 LFTKLKF-------PSGAKTKTGQWKTTAQDLEQINCGDNPI--IKNILEWRQLSKIKST 683
            +   K        P G   K  Q             G+  I  + N   +++   +  T
Sbjct: 350 FYDIFKLKSVSRKEPRGTGDKIVQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGNLLGT 409

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP----NLQNIPIKTDLGQKIRRAFIS 739
           Y D +P     +T  VHT Y+     TGR +S +     NLQNIP        IR+ F +
Sbjct: 410 YIDKIPEVKCAKTNAVHTTYNQYGAKTGRFSSSDTVTKINLQNIPSHEK---SIRKIFRA 466

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV------ 793
               K +  D+SQIE R+L++++    + + +    D++ ++ ++++GV  E        
Sbjct: 467 RDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYEDCREFYPD 526

Query: 794 ------SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
                     R   K++   I+Y      +  Q       A   I  ++  FP I +   
Sbjct: 527 GTVNAEGKHRRTTMKSVLLGIMYERGAKAIGEQFDRSAEWAQKLIDDFYKSFPKIQQLRL 586

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKS--SIRNINERAAINAPIQGSAADITRRAMI 905
           K +    + GYV TI GR+    E+  P           R ++NA IQGS+ADI + AMI
Sbjct: 587 KVEKMAEEYGYVTTIQGRKRRLPEMQLPDHDDYRYQEAHRQSLNAVIQGSSADIMKLAMI 646

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +++   +   L   M++ +HDEL+ EVPE+ I   + ++V++M++     I+L  P+ V+
Sbjct: 647 AIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVNTMKRVGHSLIDL--PMSVD 704

Query: 966 IKVSNNWQEEN 976
            +V++ W  EN
Sbjct: 705 AEVNDYWYGEN 715


>gi|242083352|ref|XP_002442101.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
 gi|241942794|gb|EES15939.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
          Length = 917

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 144/534 (26%), Positives = 237/534 (44%), Gaps = 46/534 (8%)

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           +S+    DI L+++VL     S  + ++ +        E   +                 
Sbjct: 379 VSVYNGLDICLLAWVLWPDEESRTVPNLEKFVKRRLHSEAAAAANRDGRWRNQMHKAAHN 438

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                S     L+ +L+ KL+ + L  + E ++ P+++V++ ME+ GI  D D       
Sbjct: 439 GCCRRSAQTRALYTVLK-KLLTQNLSDLVETIEAPLVNVLADMELWGIGADMDACLHARH 497

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT-TAQDLEQ 659
            I+K L  LE+  Y L+G+ F+L++   + DIL+  LK P     + G+    T +    
Sbjct: 498 IITKKLKELEKEAYRLAGKNFSLNATADIADILYVHLKLPVPKGCEKGKLHPSTDKQSLD 557

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSL----PNHINKRTQRVHTFYSLASTMTGRLAS 715
                +PII  I E R L+K+ +    S+          +   +H  +   ST TGRL+ 
Sbjct: 558 HLRDQHPIIPVIKEHRTLAKLLNGTLWSICSRAQLCTQSQRYIIHGNWLQTSTATGRLSM 617

Query: 716 LEPNLQNIP-----------------IKTDLGQKIRRAFIS-PPTKKLISADYSQIELRI 757
            EPNLQ +                  +       +R  FI        ++ADYSQIELR+
Sbjct: 618 EEPNLQCVEHLVEFDTGKSNKDYCMSVDDHHKINVRDFFIPTKENWLFVTADYSQIELRL 677

Query: 758 LAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +AH +K   L ++      D+  M+A+         +S + R + K + + I+YG+    
Sbjct: 678 MAHFSKDPTLVELLSKPDGDVFTMIASRWADKEEALISSKERENTKRLIYGILYGMGANS 737

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA QL     +AA  I+ +   FPG+  ++ +     RQ GYVET+ GRR    +I +  
Sbjct: 738 LAEQLECSTEDAAQKIQSFRRLFPGVSSWLHEVVLSCRQKGYVETLLGRRRFLTKITAGN 797

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVH-----------------KSLEDHKLATK 919
           S  +   +R A+N+  QGSAADI + AMI +H                 +   +      
Sbjct: 798 SKEKAKAQRQAVNSICQGSAADIIKVAMIRLHSVITNRTRATDSTDEVTRKFSEFGGQCH 857

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           ++LQ+HDELV EV    +  A +++   ME+A     +L VPL+  IKV   W 
Sbjct: 858 LILQVHDELVLEVVPCMVAQAGRLLQICMEEAA----SLLVPLRTKIKVGKTWG 907


>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
 gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
          Length = 1334

 Score =  337 bits (863), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 173/697 (24%), Positives = 296/697 (42%), Gaps = 85/697 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + H  L+DG+   Y+  +AT      H G  V  + GF   L K++ N        +  V
Sbjct: 269 QKHTVLIDGTLMAYKV-HATGKSLY-HLGENVTILYGFIRSLLKVINNLNP---VDNIVV 323

Query: 64  IFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            FD     ++R E++P YK+ RP  P+ +L Q   +   T + GI    + GFE DD++A
Sbjct: 324 CFDPKGGSSYRKEMFPQYKSQRPSTPQDVLEQFKKLPEITDSLGIKFAVMNGFECDDLLA 383

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +Y   A   G  VTI+S DKDL+QLV     +Y+   +  +D   V  K+GI P K+V L
Sbjct: 384 SYARQACDRGDRVTIVSEDKDLLQLVRKNVSVYNVRTDTMMDESEVFNKYGIEPNKLVTL 443

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q+L GD +DNIPGIP IG KTA  ++++YG L  I+ N   + Q K  + I    +   +
Sbjct: 444 QSLIGDKVDNIPGIPKIGPKTATEIIKQYGTLHEIIDNIEALPQ-KFIDPIKNSIDQLMV 502

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
           S +LV L  +V + IPL  L  +  +  + ++FL+  +F  + N++              
Sbjct: 503 SYQLVTLDENVDLEIPLSSLEFKPIDKTKFLNFLEKYQFNTIKNQLRNYKLKFLNEEGQE 562

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            L  NT E   I               ++  + D+               E +       
Sbjct: 563 ELASNTREYSKI---------------EYDYVDDE-----------HYKFEEMSNEEINQ 596

Query: 363 INNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIA----IAISTLDQ 416
           +   + T + + +  ++ V  L        +    T  +D     PI     I  S    
Sbjct: 597 LKPKNVTMVRDVETAKKAVATLMQHKNKYHACDTETIAIDLKKVSPIGHGRMICFSIYCG 656

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            D   F   T    L V    D  G     + +L   K++FE+E  LK+ HN  +D+ + 
Sbjct: 657 PDVKFFDGNTR---LWVDVMDDING-----EAVLQEFKEYFEDESILKVWHNYAFDRHIF 708

Query: 477 HRYGISMRGF-EDIMLMSYVLDSGR---SSHDIASIAQKWLS---YTRKEILKSRK---- 525
           + + I+++GF  D + M+ + ++ R     + + ++ ++ L+      K++   +K    
Sbjct: 709 YNHNINVKGFGGDTLHMARLWNAARQNSGGYSLEALCRELLNKTKTPIKDLFGQKKIKAN 768

Query: 526 ----SSIPI--------DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE------KLLH 567
                +I I        D+ S     E++  +S +   L   L  KL          +  
Sbjct: 769 GEAGKAITIPPLQRIQRDRRSILDWIEYSSLDSELTWSLRENLHMKLEDMVWTQNSTMWD 828

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-----GEKF- 621
            Y    +P   ++++ME  G++ID D LK + +   K++          +     G K+ 
Sbjct: 829 FYYLNWRPFGHLLTEMEQRGMKIDIDYLKNLESTAFKDMEENRNRFISWASKHSEGAKYM 888

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           N  S  Q+  +LF  +   +  KTK    K+   + E
Sbjct: 889 NPDSDAQIQQLLFAPV---TNKKTKEEMPKSKDFETE 922



 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 104/348 (29%), Positives = 165/348 (47%), Gaps = 27/348 (7%)

Query: 651  KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
                ++ E +       I ++LE   +  + +T+   L    + +  R+HT  ++ +T T
Sbjct: 990  SENKEEGEALGKEACLAIASLLELGTIGTLLNTFIIPLQKLAD-KNSRLHTSVNV-NTET 1047

Query: 711  GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
            GRL+S +PNLQN P       KIR+AF   P   LI ADY Q+ELR+LAHI     +   
Sbjct: 1048 GRLSSRKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKSMISA 1107

Query: 771  FENSLDIHRMVAAEIFGVNIEKVSP-----------------------QMRRHAKTINFS 807
            F+   D H   A  ++    E V                           RR AKT+NFS
Sbjct: 1108 FKVGGDFHSRTAMGMYPHVKEAVDKGEVLLEWDGDGEPPKPLLKNIFASERRKAKTLNFS 1167

Query: 808  IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
            I YG +   L+T   +   EA + + R++   P +  +  KT      + +  T+ GR  
Sbjct: 1168 IAYGKTAHGLSTDWGVTLKEAQETLNRWYEDRPEVLVWQRKTIATAHSHKWTRTLMGRYR 1227

Query: 868  HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            H  +I++    ++N  ERA+IN P+QG AADI  +AM+ +  +    +L  K+++QIHDE
Sbjct: 1228 HLPDIDNSAKGMKNHAERASINTPLQGGAADIVMKAMLIIEDNKRIKELGYKLIMQIHDE 1287

Query: 928  LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            L+ E PEE    A  ++++ M         L + L V+ + +  W E 
Sbjct: 1288 LILEGPEENADEARGLVMNLMSNPLTT--PLLIDLVVDCRYAKTWYEA 1333


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 142/613 (23%), Positives = 284/613 (46%), Gaps = 56/613 (9%)

Query: 371  IVNTKDIQQWVQKLET-IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I+N K+  + +  +   I      + T  ++ F  K   I IS  +              
Sbjct: 1239 IINDKNYNEKINYIYNGIKYCGLDMETTGLEVFGEKIRLIQISVENYPVIIY-------- 1290

Query: 430  DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
                         N     IL  L+K   +E+ +KI  N K+D   L     ++    D 
Sbjct: 1291 ----------DMFNITNNNILDGLRKILNDENIVKIIQNGKFDTKFLLYNNFNITNIFDT 1340

Query: 490  MLMSYVLDSGRSSHD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             + S +LD  ++ +   + +I +K+LS     + K +++S+  + + ++    +A  +S+
Sbjct: 1341 YIASKLLDKNKNMYGFKLNNIVEKYLSVY---LDKQQQNSVWNNSLLNNNQLFYAARDSS 1397

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
             +L+L+  L  ++  E +  +   ++   I  +  ME+ GI++D + L + + +I   L 
Sbjct: 1398 CLLKLYKKLSEQIKAENM-QIVNDIENKCILPICDMELNGIKVDLENLNKSTDQILNELN 1456

Query: 608  SLEENIY-DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
               + +  +L  E  N++S +Q+   L       +  +  + +      D    N  ++ 
Sbjct: 1457 VERDKLKKELKNEDINVNSQQQILKALQD-----NNVRDLSNKLIDNTSDANLKNFINHN 1511

Query: 667  IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
             +  +  +R+L K+ S +   LP HINK+T ++HT ++   T +GR +S +PNLQ IP +
Sbjct: 1512 AVILLRNYRKLYKLYSAFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ 1571

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                + IR  FI       I AD+ QIEL+I A I     + + + N++D+H + A+ I 
Sbjct: 1572 ----KNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIIT 1627

Query: 787  GVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFP 840
               I +++ + R  AK INF ++YG++   L         +++   +   +   +F  + 
Sbjct: 1628 KKGINEINKEDRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYK 1687

Query: 841  GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            G+  +        +   Y  T+  R++ +             +   A+N P+QG+ ADI 
Sbjct: 1688 GLSRWH-NIVKQTKALEY-STLSNRKVVFPY----------FSFTKALNYPVQGTCADIL 1735

Query: 901  RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
            + A++ ++K+L    +  K++L +HDE++ EV ++    A +I+V SME +    +  +V
Sbjct: 1736 KLALVELYKNLR--HINGKIILCVHDEIIIEVDKKHQEEALRILVESMENSASFFLK-KV 1792

Query: 961  PLKVNIKVSNNWQ 973
              +V+IK++ NW 
Sbjct: 1793 KCEVSIKIAQNWG 1805


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 146/598 (24%), Positives = 283/598 (47%), Gaps = 55/598 (9%)

Query: 385  ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
            + +      I T  ++ F  K   I I+  D               + ++        N 
Sbjct: 1306 KNVTHCGLDIETTGLEVFDEKIRLIQIAVED-------------YPVIIYDM-----FNI 1347

Query: 445  LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD 504
              + IL+ L++  +NE  +KI  N K+D   L      +    D  + S +LD  ++ + 
Sbjct: 1348 TKESILTGLREVLKNEKVVKIIQNGKFDAKFLMHNKFEVANIFDTYIASKLLDKNKNMYG 1407

Query: 505  --IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
              + +I +K+L+ T   + K +++S+  + + ++    +A  +S+ +L+L+  L+ ++  
Sbjct: 1408 FKLNNIVEKYLNVT---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICR 1464

Query: 563  EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY-DLSGEKF 621
            E +  V   ++   I  +  ME+ GI +D + L + + EI   L      +  +L  E+ 
Sbjct: 1465 ENMGTV-NDIENKCILPICDMELNGITVDLESLSKSTNEILSELNEETSKLKAELKDEEI 1523

Query: 622  NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
            N++S +Q+   L  K       +  + +      D    N  ++  +  +  +R+L K+ 
Sbjct: 1524 NVNSQQQVLKALQNK-----NVRDVSNKLIENTSDSNLKNFLNHREVVLLRNYRRLYKLY 1578

Query: 682  STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            S +   LP HINK+T ++HT ++   T +GR +S +PNLQ IP +    + IR  FI   
Sbjct: 1579 SAFYLKLPQHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREIFIPQK 1634

Query: 742  TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
                I AD+ QIEL+I A I     + + + N++D+H + A+ I    I  V+ + R  A
Sbjct: 1635 DNIFIIADFRQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKAIADVNKEDRHIA 1694

Query: 802  KTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            K INF +IYG++   L         L +   +   +   +F  + GI+ +  + K   R 
Sbjct: 1695 KAINFGLIYGMNYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHYKGIYRWHNQIKQM-RA 1753

Query: 856  NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
              Y  T+  R++ +             +   A+N P+QG+ ADI + +++ ++K+L    
Sbjct: 1754 LEY-STLSNRKVIFPY----------FSFTKALNYPVQGTCADILKLSLVELYKNLR--P 1800

Query: 916  LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +  K++L +HDE++ EV ++    A +I+V SME +    +  +V  +V++K++ NW 
Sbjct: 1801 INGKIILCVHDEIIIEVDKKYQEDALKILVESMENSASFFLK-KVKCEVSVKIAQNWG 1857


>gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis]
 gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis]
          Length = 267

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/269 (50%), Positives = 182/269 (67%), Gaps = 4/269 (1%)

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            +TGRLAS +PNLQNIP++T  G++IR AF++PP   ++SADYSQIELRI+AH+++   +
Sbjct: 3   AITGRLASSDPNLQNIPVRTAEGRRIREAFVAPPGSHIVSADYSQIELRIMAHLSQDAGM 62

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
              F N+ DIHR  AAEIFGV    V  + RR+AK INF +IYG+S F LA  L I RS 
Sbjct: 63  LSAFANNEDIHRATAAEIFGVERAAVDSEQRRYAKVINFGLIYGMSAFGLAQNLNIERSA 122

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           AA+YI+RYF R+PG+ +Y+  T+   +Q GYVETIFGRR+   EINS     RN  ERAA
Sbjct: 123 AANYIERYFARYPGVRQYMNDTRELAKQQGYVETIFGRRLWVPEINSANVQRRNGAERAA 182

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AAD+ + AMI+V + L   KL TK+++Q+HDELV EVP+ E+    + +   
Sbjct: 183 INAPMQGTAADLIKLAMIAVDQWLTAEKLQTKLIMQVHDELVLEVPDAELALIQEHLPRL 242

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           M+        L VPL   +   NNW+  +
Sbjct: 243 MQSVA----TLDVPLLAEVGSGNNWESAH 267


>gi|148263291|ref|YP_001229997.1| ribonuclease H [Geobacter uraniireducens Rf4]
 gi|146396791|gb|ABQ25424.1| Ribonuclease H [Geobacter uraniireducens Rf4]
          Length = 484

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 142/409 (34%), Positives = 218/409 (53%), Gaps = 15/409 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L+++DGSS+IYRA+Y    L+    G+P NA+ GF  ML  LLQ +R +    +
Sbjct: 1   MNAAPQLYVLDGSSYIYRAYYGVRDLAT-SGGMPTNAVFGFTRMLLGLLQENRPD----Y 55

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+ D P   TFR E+YP YKA+R  +P  L+PQLP +R   QA  IPA+E  GFEADD
Sbjct: 56  LAVVLDPPREETFRRELYPAYKAHRDAMPADLVPQLPYIRQILQALNIPALEAPGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT       EG  VT+++ DKDL+Q+V     L DT+K+ +   + V+ ++G+PPE +
Sbjct: 116 VIATLARRYAAEGIEVTVVTGDKDLLQIVGDGINLLDTMKDLRSGPQEVLDRFGVPPELV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             +  L GD+ DNIPG+PGIG KTAA L++ +G+LE +L   S +  K+RREN+  +A+ 
Sbjct: 176 PDVLGLAGDTSDNIPGVPGIGEKTAAELVRRFGSLEGVLQWKSLVNGKQRRENLHAHADQ 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           ARLS+ L  +R DVP+ + L  L     N P L+  L+ LEF+ L       +      +
Sbjct: 236 ARLSKTLATVRYDVPLDLSLAELERRTPNLPELMPLLRELEFSAL----EVAFTPPPPGV 291

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             +  D +  ++        +      K  + S     ++    E T     LE L K  
Sbjct: 292 VEIYCDGSGRDSGPGGYGVILRYGEHEK--ELSGFEAASTSQRMELTAAIRGLEALHKPR 349

Query: 360 QYPINNDSYTKIVNTKDI-QQWVQ--KLETIGSASFKIITDTMDAFHSK 405
           +  + +DS   +    +    W++  +LET  +   + +   + A  + 
Sbjct: 350 RVRVFSDSQYLVRGMSEWLHGWIRTGRLETPDALKNQDLWQKLSALSAN 398


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 145/598 (24%), Positives = 287/598 (47%), Gaps = 55/598 (9%)

Query: 385  ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
            + +      I T  ++ F  K   I I+  +               + ++        N 
Sbjct: 1307 KNVTHCGLDIETTGLEVFDEKIRLIQIAVEN-------------YPVIIYDM-----FNI 1348

Query: 445  LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD 504
              + IL+ L++  +NE  +KI  N K+D   L      +    D  + S +LD  ++ + 
Sbjct: 1349 TKESILTGLREILKNEKVVKIIQNGKFDAKFLMHNNFQVDNIFDTYIASKLLDKNKNMYG 1408

Query: 505  --IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
              + +I +K+L+ T   + K +++S+  + + ++    +A  +S+ +L+L+  L+ ++  
Sbjct: 1409 FKLNNIVEKYLNVT---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICK 1465

Query: 563  EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY-DLSGEKF 621
            E +  V   ++   I  +  ME+ GI +D + LK+ + EI   L +    +  +L  E+ 
Sbjct: 1466 ENMETV-NDIENKCILPICDMELNGITVDLESLKKSTNEILSELNTETSKLKAELKDEEI 1524

Query: 622  NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
            N++S +Q+   L       +  +  + +      D    N  ++  +  +  +R+L K+ 
Sbjct: 1525 NINSQQQVLKALQN-----NNVRDISNKLIENTSDSNLKNFLNHKEVVLLRNYRRLYKLY 1579

Query: 682  STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            S +   LP HINK+T ++HT ++   T +GR +S +PNLQ IP +    + IR  FI   
Sbjct: 1580 SAFYLKLPQHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREIFIPQK 1635

Query: 742  TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
                I AD+ QIEL+I A I     + + + N++D+H + A+ I    I  V+ + R  A
Sbjct: 1636 DNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKPIADVNKEDRHIA 1695

Query: 802  KTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            K INF +IYG++   L         L +   +   +   +F  + GI+ +  + K  +R 
Sbjct: 1696 KAINFGLIYGMNYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHYKGIYRWHNQIK-QIRG 1754

Query: 856  NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
              Y  T+  R++ +             +   A+N P+QG+ ADI + +++ ++K+L+   
Sbjct: 1755 LEY-STLSNRKVIFPY----------FSFTKALNYPVQGTCADILKLSLVELYKNLK--P 1801

Query: 916  LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +  K++L +HDE++ EV ++    A +I+V SME +    +  +V  +V++K++ NW 
Sbjct: 1802 IHGKIILCVHDEIIIEVDKKYQEDALKILVESMENSASFFLK-KVKCEVSVKIAQNWG 1858


>gi|47216119|emb|CAG11187.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2382

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 151/705 (21%), Positives = 277/705 (39%), Gaps = 145/705 (20%)

Query: 403  HSKPIAIAISTLDQKDDTSF---KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
                + I ++      D  +   + E      S   +      +   +E L+ +K     
Sbjct: 1684 QDGLVLIGLAVCWGSRDAYYISLQQEQSAGSFSSSLAPPPLDDDLGLRERLAQVKTCLGQ 1743

Query: 460  EH-----FLKIGHNIKYDKLVL-HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW 512
                    + I ++I     VL    GIS+ G  ED  +  ++LD G     + ++   +
Sbjct: 1744 PSAHHGDRVLIAYDIIRTYKVLVLSCGISLEGSCEDPKVACWLLDPGSEERTLPNMVTVY 1803

Query: 513  LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
                   +     S     ++        A   S +   +   L   L  + +L  +  +
Sbjct: 1804 CPEELPLLGGLGSSHTHCPRV-------RASTASVLTYAVMGRLTGLLREDGVLDHFRSV 1856

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            + P    ++ +E+ G+       ++    +   L +LE   Y L+G  F+L+S   +  +
Sbjct: 1857 EMPSQVCLALLELNGVGFSAAECERQKHVMQAKLAALEGQAYRLAGHSFSLTSVDDVAQV 1916

Query: 633  LFTKLKFPS-----GAKTKTG---------------QWKTTAQDLEQINCGDNPIIKNIL 672
            LF +L  P      G+K+K                 +  +T +D+ +     +P+   IL
Sbjct: 1917 LFLELHLPPNGDVNGSKSKKTLGYGRRGGGGRVRLGKQFSTTKDVLEKLRPLHPLPGLIL 1976

Query: 673  EWRQLSKIKSTYADSLPN----HINKRTQRVHTFYSLASTMTG----------------- 711
            EWR+++   +     L      H      R++       T TG                 
Sbjct: 1977 EWRRITNALTKVVFPLQREKKHHSALSMDRIYPIA-QTHTATGNPQTPEPCETCNMRWLS 2035

Query: 712  ------RLASLEPNLQNIPIKTDLGQ---------------------------------- 731
                  R++  EPN+QN+P   ++                                    
Sbjct: 2036 LVLLPGRVSFTEPNIQNVPKDFEIQMATVVCESPPSQDGRHLAARKGKKRRSAVPSGAAA 2095

Query: 732  ----------KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
                       +R AF+      +++ADYSQ+ELR+LAH++K   L QV     D+ R +
Sbjct: 2096 GSEQGPAFSVSMRHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLNGGADVFRCI 2155

Query: 782  AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            AAE   V+ + V+  +R+ AK I + IIYG+    L  Q+ +  ++AA YI+ +  R+ G
Sbjct: 2156 AAEWKSVDPDSVTDGLRQQAKQICYGIIYGMGAKSLGEQMGVEENDAACYIETFKSRYRG 2215

Query: 842  IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            I+ ++++T     +NGYV+T+ GRR +   I +  + ++   ER A+N  +QGSAADI +
Sbjct: 2216 INAFLKETVKNCGKNGYVQTLMGRRRYLPGITNTNAHVKAHAERQAVNTTVQGSAADIVK 2275

Query: 902  RAMISVHKSLE--------------------------------DHKLATKMLLQIHDELV 929
             A +++ K L                                  H      +LQ+HDEL+
Sbjct: 2276 LATVNIQKRLRQTYPAAPLSHQHPAPVMGRFCGAGSSRRRAVTRHPRGGYFVLQLHDELI 2335

Query: 930  FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +E  +E++   +QI+   ME A    + L V ++  +KV  +W +
Sbjct: 2336 YETTDEDVIQVAQIVKREMETA----VKLYVKMRAKVKVGPSWGD 2376


>gi|309808033|ref|ZP_07701952.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
 gi|308168716|gb|EFO70815.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
          Length = 302

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 137/305 (44%), Positives = 198/305 (64%), Gaps = 7/305 (2%)

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           +++RQ+SKI+STY + L ++I    + +HT +    T TGRL+S+EPNLQNIP+K + G+
Sbjct: 1   MDYRQISKIQSTYINGLLDYIQADGK-IHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGK 59

Query: 732 KIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-N 789
           +IR+AF+       L S DYSQ+ELR+LAH++    + + F+   DIH   A +IFG+ N
Sbjct: 60  QIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSN 119

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +++V+P MRRHAK +NF I+YGIS + LA  L I R EA ++I  YF ++P I +Y++  
Sbjct: 120 LDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAA 179

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
               R+ GY ETI  RR    +I++   +IR+  ER AIN+PIQGSAADI + AMI +  
Sbjct: 180 VKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQS 239

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            LE  KL TKM+LQIHDEL+F+VP EE+     ++   M++A      L VPL  +    
Sbjct: 240 ELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPKIMQQAA----QLDVPLIADANWG 295

Query: 970 NNWQE 974
           +NW E
Sbjct: 296 HNWYE 300


>gi|195145962|ref|XP_002013959.1| GL23113 [Drosophila persimilis]
 gi|194102902|gb|EDW24945.1| GL23113 [Drosophila persimilis]
          Length = 2193

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 183/782 (23%), Positives = 330/782 (42%), Gaps = 90/782 (11%)

Query: 263  ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN-----------------IEPVVLD 305
                 +  RL+S  + L   +L +  ++      A+                        
Sbjct: 1430 HPTTPHTSRLMSIYQILRSQRLQSPRSSLSSTGTASCSARSTQSSGSLFTPCETAKDSAS 1489

Query: 306  INTTENKGIAIETEIDRDTTIKTSQFSS--LSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             NT      A   E+     + +++ SS  LSD +++ +  + P +L    +   S    
Sbjct: 1490 KNTPNGASCAELAEMSNAAGMDSNEASSIKLSDMSAENSLMKHPFQLNSSHVMSFSTTDD 1549

Query: 364  NNDSYTKIV------NTKDIQQWVQKLETIGSASFKIITDTMD-----AFHSKPIAIAIS 412
               S+ +I       N +  Q  +++L       F +  ++          +  +   ++
Sbjct: 1550 TALSFDRIEIIDMCANRQLFQMALKELLAASRCGFSVGLESQAGKAKPLIGANLLINQLA 1609

Query: 413  TLDQKDDTSFKVETIFIDLSVHTS----------------QDSTGKNTLTKEILSYLKKF 456
              +Q++  + K     +D S   +                Q+  G+   T+  +  L K 
Sbjct: 1610 AAEQRESVAGKQALFQVDDSSFIAGLSFCLADNVVYYMCMQEEEGQQVPTRLKVQELCKL 1669

Query: 457  FENEHFLKIGHNIKYDKLVLHRYGIS-MRGF----EDIMLMSYVLDSGRSSHDIASIAQK 511
             +      + H+ K     L  +G+  ++      ED  +  ++L+  ++     ++ Q+
Sbjct: 1670 MDRPELTLLVHDAKEQVKALL-HGVPQLQNIGIKVEDPKVGHWLLEPDKTV-SFKNMCQQ 1727

Query: 512  WLSYTRK--EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            +         +  S +        S S +      +    + +  +L+ ++  E L  + 
Sbjct: 1728 FAPECTALANLCGSGRGYSSHGLDSSSAILPKLRASIEACVTVH-ILKGQI--ENLERI- 1783

Query: 570  ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
              ++ P+  V+ +ME  G       + ++   +   L  +E  IY + G KFNL S + +
Sbjct: 1784 -EVEMPIQIVLCRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHGSKFNLGSTQAV 1842

Query: 630  GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
             ++L    K         G+  T+ Q LE++    +PI + IL  R+L+         L 
Sbjct: 1843 ANVLGLHRK-------PHGRVSTSRQVLEKL---GSPISELILNHRKLNMQIVKGMQPLI 1892

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK-------IRRAFIS-PP 741
                         +S+  T TGR++  EPNLQN+    D+           R  F S   
Sbjct: 1893 RCCKA---NRIHGHSITHTATGRISMSEPNLQNVAKDFDIRMGPDSVRISCRSVFKSMDE 1949

Query: 742  TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             + L+SAD+ Q+E+RILAH+++   L  V  +  D+   +AA    +   +V+ QMR   
Sbjct: 1950 KRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHIPEAEVTEQMRSGT 2009

Query: 802  KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
            K I + I+YG+    L   L+   SEA    +++   +PGI  Y EK   F R+ GYVET
Sbjct: 2010 KQICYGIVYGMGMRSLGDALQCTESEAQLICEQFHQSYPGIRAYTEKVLKFARKLGYVET 2069

Query: 862  IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED--HKLATK 919
            I GRR + D INS + ++    ER A+N  IQGSAADI +RA++ + K++     KL  +
Sbjct: 2070 ITGRRRYLDHINSGEQNLIKQAERQAVNTTIQGSAADIAKRAILDMDKNIGRYWKKLGVE 2129

Query: 920  -----MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                 ++L IHDELV+EVPE +    ++ +  +ME   + K  L VPLKV IK+  +W E
Sbjct: 2130 ENSIQLVLHIHDELVYEVPEAKAKRIAKFLGLTMES--IGKGKLTVPLKVKIKMGESWGE 2187

Query: 975  EN 976
             +
Sbjct: 2188 MH 2189


>gi|307199388|gb|EFN80013.1| DNA polymerase theta [Harpegnathos saltator]
          Length = 1937

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 155/576 (26%), Positives = 277/576 (48%), Gaps = 60/576 (10%)

Query: 438  DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG-FEDIMLMSYV 495
            ++      TKE ++ LK+   +         IK    +L+R   IS +  F D ++  ++
Sbjct: 1377 NTQDAKISTKEQITLLKELLSDAALYVKCFAIKDTYKLLYRCCAISAKCRFLDPVIAHWL 1436

Query: 496  LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI----PIDKISDSQVQEH-AIENSNVIL 550
              +     + + +  ++  + +   +  R +S     P   + +S   E  +   + +  
Sbjct: 1437 YTNDFEG-NFSELVTQY--FPQGNFIMKRTNSCCNVGPGMDVQNSLPGEFRSAAEAVLTW 1493

Query: 551  QLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
             +   +  KL      LLH +  ++  +  +++ ME++GI ++   L++  + I   + S
Sbjct: 1494 HMTDSITSKLEELNPVLLHTFRDIEMRIATILACMELSGIGVNLKALQETLSVILSEMQS 1553

Query: 609  LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
            LE   YDL+G KFNLSS K++G +L          K  T +          +   DNPI 
Sbjct: 1554 LETRAYDLAGRKFNLSSSKEVGQVL----GLYKDKKVSTSK--------AVLEKCDNPIS 1601

Query: 669  KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            + ++ WR+L+  K+     L N   + + R+H       T+TGR++  EPNLQN+P    
Sbjct: 1602 RLVISWRKLNATKTKIVYPLLNLSQEDS-RIHGNCITC-TVTGRVSMHEPNLQNVPKDFH 1659

Query: 729  LGQK-----IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
                     +RR+F+      ++SADY Q+ELR+L H ++ + L ++ +   DI + +AA
Sbjct: 1660 FEDNNLLVSVRRSFVPALGNVMLSADYCQLELRLLTHFSQDSVLCEIMKQQGDIFKSIAA 1719

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            +   V  E+V+ +MR+  K + + +IYG+    LA  L I  +EA  +++ + + +PGI+
Sbjct: 1720 KWNNVIEEEVTNEMRQRTKQLCYGMIYGMGVKSLAENLCISETEAQHFLESFMNAYPGIY 1779

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            ++++ T      NGYV T+ GRR    ++ S KSS R   ER A+N  +QGSAADI ++A
Sbjct: 1780 KWLDDTLEKAHHNGYVTTLLGRRRQLPDLRSTKSSTRAQAERQAVNTKVQGSAADIVKKA 1839

Query: 904  MISVHKSLEDH-------------------------KLATKMLLQIHDELVFEVPEEEIT 938
            MI + + +                            +    ++LQ+HDEL++EV   ++ 
Sbjct: 1840 MIIIEEKMRHSFPDSVIVFPETQGTRKLRRNSRDMLQRGGYLVLQLHDELLYEVNSADLK 1899

Query: 939  TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              + II  SME  C     L VPL V ++V   W +
Sbjct: 1900 EVAIIIKESMEDVC----QLTVPLPVKVRVGPAWGD 1931


>gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 886

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 176/529 (33%), Positives = 288/529 (54%), Gaps = 30/529 (5%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ 510
           YL+   EN  + KIG N+K    +   Y I  RG   D  ++                  
Sbjct: 378 YLRPILENNKYYKIGKNLKNVFHIFQEYNILFRGIHFDTTII------------------ 419

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEH----AIENSNVILQLWLLLRPKLIVEKLL 566
            +      +  K  ++ I   K +  +         ++ S + L+++ L +   I +K  
Sbjct: 420 NYYYKLNYKKNKKYQNLIYKYKKNKKEKSFKRKFIIMQESLISLKIYFLFKKN-IKKKKR 478

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
             ++ +D  ++ +++++E  G+ I + +LK+      K L  L++ I+ ++ EKFN++S 
Sbjct: 479 ENFQLIDMSLLPILAEIENNGVLIKKKILKKQKKNHEKTLKKLKKKIFKITKEKFNINSS 538

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           KQL +ILF K   P   KTK G   T    L++++   + + K IL++R + KI +TY  
Sbjct: 539 KQLQNILFKKFNLPKIYKTKLGNISTNEIVLKKLS-KIHILPKIILQFRLIKKIINTYLR 597

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
           +L   IN +T R+HT Y+  +T TGRL+S  PNLQNIPIKT +G+K+R AFI+     L+
Sbjct: 598 NLIKSINNKTNRIHTTYNQINTSTGRLSSKNPNLQNIPIKTKIGRKLRIAFITKKKWLLL 657

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           +ADYS IELRI+AH +K   L +    + DIH   A+ IF   +EK+    R  AKTINF
Sbjct: 658 TADYSHIELRIIAHYSKDKNLIKDLLKNKDIHISTASHIFNKPLEKIKKYHRNIAKTINF 717

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
           SI+YGISPF L+ +L I   ++ + I RYF ++  I  +I+ T    ++ GY++T+F R+
Sbjct: 718 SILYGISPFGLSKKLNISIKKSKNLIYRYFLKYNKIKRFIKNTYKTAKKRGYIKTLFKRK 777

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIH 925
           ++   INS    ++N  +R  IN  IQ +A+DI +++MI++H   +       K+++QIH
Sbjct: 778 LYIPNINSKNIYLKNSAKRFCINLMIQNTASDIIKKSMITLHHLFKKKFPKDIKIIMQIH 837

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           DEL+FE+ E++      +I   ME        L +PL +  K+  NW+E
Sbjct: 838 DELIFEIKEKKKDKIIDVIKKIMEN----NTKLIIPLYITTKIGKNWKE 882



 Score =  204 bits (520), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 140/291 (48%), Gaps = 11/291 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  + ++DG   +Y+ +++   L  K +G     + G+  +L KL++    +       +
Sbjct: 2   KKKIIIIDGHYCLYQNYFSFIKLKNK-NGSSTGVLYGYIRLLNKLIEKFNPKK----III 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  T R++++  YK NR  +P  L  Q+  ++   +A  I  I I+  EADDII T
Sbjct: 57  VFDTPKKTNRHKLFTKYKKNRISMPNELKKQINPLKKIIKALNITIISIKKIEADDIIGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            + I  K+ + + I S DKD+ QL+     +     ++ ++   + KK+G+ P+ +    
Sbjct: 117 ISRIFTKKKYYIFIYSADKDMTQLIKKNVFVIPGSIKKVLNKNDIFKKYGVYPKSIADFL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237
            L GD  DNI G+ GIG KTA +LLQ + +++ I  N  +I        K  ++N+ +  
Sbjct: 177 CLVGDFSDNIRGVLGIGKKTAKILLQSFSSIKKIYKNIEKISFLPIKNIKNIKKNLEKNK 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +   LS +L  +  ++ +      +     N   +    +  +  + + ++
Sbjct: 237 KNTFLSYQLTKINKNIELPKIHSIIKKNTLNIEFIKKKFEFYQLNEYLKKI 287


>gi|198451642|ref|XP_001358456.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
 gi|198131580|gb|EAL27595.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
          Length = 2054

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 157/593 (26%), Positives = 266/593 (44%), Gaps = 57/593 (9%)

Query: 406  PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
               ++    D                     Q+  G+   T+  +  L K  +      +
Sbjct: 1493 IAGLSFCLADNVVYYMCM-------------QEEEGQQVPTRLKVQELCKLMDRPELTLL 1539

Query: 466  GHNIKYDKLVLHR-----YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK-- 518
             H+ K     L       + I +R  ED  + +++L+  ++     ++ Q++        
Sbjct: 1540 VHDAKEQLKALLHGVPQLHNIGIR-VEDPKVGNWLLEPEKT-FSFKNMCQQFAPECTALA 1597

Query: 519  EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
             +  S +        S S +      +    + +  +L+ ++  E L  +   ++ P+  
Sbjct: 1598 NLCGSGRGYSSHGLDSSSAILPKLRASIEACVTVH-ILKGQI--ENLERI--EVEMPIQI 1652

Query: 579  VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
            V+ +ME  G       + ++   +   L  +E  IY + G KFNL S + + ++L    K
Sbjct: 1653 VLCRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHGSKFNLGSTQAVANVLGLHRK 1712

Query: 639  FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                     G+  T+ Q LE++    +PI + IL  R+L+         L          
Sbjct: 1713 -------PHGRVSTSRQVLEKL---GSPISELILNHRKLNMQIVKGMQPLIRCCKA---N 1759

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK-------IRRAFIS-PPTKKLISADY 750
                +S+  T TGR++  EPNLQN+    D+           R  F S    + L+SAD+
Sbjct: 1760 RIHGHSITHTATGRISMSEPNLQNVAKDFDIRMGPDSVRISCRSVFKSMDEKRCLLSADF 1819

Query: 751  SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
             Q+E+RILAH+++   L  V  +  D+   +AA    +   +V+ QMR   K I + I+Y
Sbjct: 1820 CQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHIPEAEVTEQMRSGTKQICYGIVY 1879

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            G+    L   L+   SEA    +++   +PGI  Y EK   F R+ GYVETI GRR + D
Sbjct: 1880 GMGMRSLGDALQCTESEAQLICEQFHQSYPGIRAYTEKVLKFARKLGYVETITGRRRYLD 1939

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED--HKLATK-----MLLQ 923
             INS + ++    ER A+N  IQGSAADI +RA++ + K++     KL  +     ++L 
Sbjct: 1940 HINSGEQNLIKQAERQAVNTTIQGSAADIAKRAILDMDKNIGRYWKKLGVEENSIQLVLH 1999

Query: 924  IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            IHDELV+EVPE +    ++ +  +ME   + K  L VPLKV IK+  +W E +
Sbjct: 2000 IHDELVYEVPEAKAKRIAKFLGLTMES--IGKGKLTVPLKVKIKMGESWGEMH 2050


>gi|332019330|gb|EGI59836.1| Helicase POLQ-like protein [Acromyrmex echinatior]
          Length = 2176

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 157/608 (25%), Positives = 284/608 (46%), Gaps = 66/608 (10%)

Query: 403  HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
            + +   +AIS               +I  S       +G     KE ++ LK    +   
Sbjct: 1597 NKEIRGVAISWESNI--------AYYISFSNSQESKVSG-----KEQMALLKDLLYDTTL 1643

Query: 463  LKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTR 517
                   K    +L++  GI+ +  F D ++  ++  +     +   +  ++    +   
Sbjct: 1644 YMKCFATKDIYKLLYQCCGITAKCRFLDPIIGHWLYTNDFER-NFNEMVLEYFQQGNVIM 1702

Query: 518  KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKP 575
            K I     +   +D  +    +  +   + +   +   +  KL      LL+ +  ++  
Sbjct: 1703 KRIKSCYYAGPGMDARNSLPGEFRSAAEAVLTWHMMDNIMNKLEELNPALLYTFREVEMR 1762

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
            ++  ++ ME++GI ++   L+++S+ +S  + SLE   YDL+G KFN SS K++G +L  
Sbjct: 1763 IMTTLACMELSGIGVNLKSLQELSSVVSNEMQSLETKAYDLAGRKFNFSSSKEVGQVL-- 1820

Query: 636  KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
                    K  T +          +   DNPI   ++ WR+L+  K+     L N     
Sbjct: 1821 --GLYKDKKVSTSKT--------VLEKCDNPISTLVISWRKLNATKTKMIYPLLNLAQGD 1870

Query: 696  TQRVHTFYSLASTMTGRLASLEPNLQNIP-----IKTDLGQKIRRAFISPPTKKLISADY 750
            ++       +  T+TGR++  EPNLQN+P        +L   +R AF+      ++SADY
Sbjct: 1871 SRVRG--NCITCTVTGRVSMHEPNLQNVPKDFSFADNNLVVSVRMAFVPVLGNIMLSADY 1928

Query: 751  SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
             Q+ELR+L H ++ + L ++ + S DI + +AA+   V  E+V+ +MR+  K + + +IY
Sbjct: 1929 CQLELRLLTHFSQDSILCKIMKQSGDIFKNIAAKWNNVAEEQVTNEMRQRTKQLCYGMIY 1988

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            G+    LA  L I   EA ++++ +   +PGI++++         +GYV T+ GRR  + 
Sbjct: 1989 GMGVKSLAENLCISEPEAQEFLESFMSAYPGIYKWLNDILEEAHHDGYVTTLLGRRREFP 2048

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE---------------DHK 915
            +++S KSS+R   ER ++N  +QGSAADI ++AMIS+   +                  K
Sbjct: 2049 DLSSTKSSVRAQAERQSVNTKVQGSAADIVKKAMISIEDKIRCYFPDSAIIFPEVHASRK 2108

Query: 916  LAT-------KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            L +        ++LQ+HDEL++EV   ++   + II  SME  C     L VPL V I+V
Sbjct: 2109 LRSNLQQRGGYLVLQLHDELLYEVNLADLKKFAAIIRESMENVC----QLTVPLPVKIRV 2164

Query: 969  SNNWQEEN 976
               W + N
Sbjct: 2165 GPAWGDLN 2172


>gi|307266791|ref|ZP_07548315.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918184|gb|EFN48434.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 288

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 113/290 (38%), Positives = 178/290 (61%), Gaps = 10/290 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DGSS +YRA+YA P+L+   +GL  NA+ GF  ML KL++  + +    + A+ F
Sbjct: 3   KFLVIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLIEEEKPD----YIAIAF 57

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D  A TFR++ Y DYKA R  +PE L  Q+ L++     F I  +E++G+EADDII T +
Sbjct: 58  DKKAPTFRHKEYQDYKATRQAMPEELTEQVDLLKEIIDGFNIKTLELEGYEADDIIGTIS 117

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
            +AE++G  V +++ D+D +QLVS    +  + K     E+ D + V++++ I P++ + 
Sbjct: 118 KLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPQQFID 177

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L+ L GD  DNIPGIP IG KTA  LL+E+G++EN+L N S++K  K +ENI    E A 
Sbjct: 178 LKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLQNLSQLKG-KIKENIENNKELAV 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           +S++L  ++ D+PI I  E   ++D N  +L+     LEF  LI+ +   
Sbjct: 237 MSKRLATIKRDIPIEIDFEEYRVKDFNEEKLLELFNKLEFFSLIDNIKKK 286


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score =  333 bits (854), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 142/629 (22%), Positives = 281/629 (44%), Gaps = 76/629 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
            +I++  D+  +++KL      +    T  +D    +   I ++                
Sbjct: 9   KRILHPADLVPYMEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAE-------------- 54

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
            DL V      +      + I + L     +   +K+  N K+D   L    I      D
Sbjct: 55  -DLPVLVIDCFSFLPEGRELINAIL-----STSGVKVFQNAKFDLQFLMALDIFPPTLFD 108

Query: 489 IMLMSYVLDSGRSS--HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            ML S +L         ++ ++AQ +L+   +++ K  ++S    ++++SQ+  +A  ++
Sbjct: 109 TMLASQLLRGSGGPVQSNLKALAQHYLN---EDLDKEEQTSNWQGELTESQIL-YAARDA 164

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            ++L+L  ++ P+++   L  + E ++   +  ++ +E  GI +D+   +++  +     
Sbjct: 165 EILLRLRKVMIPQILENHLTQIAE-IEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAER 223

Query: 607 LSLEENIYDLSGEKF--------------NLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +  + +Y                     N  S + + ++L      P  A  K   +  
Sbjct: 224 KTALDELYTYVERPLMQMSLWGEDVAINQNFESQQFVLNVLHEH-GIPVAATAKQDLYPH 282

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                       +P++K +L +R+ +K  S +       I+  T R+H  Y   S  +GR
Sbjct: 283 RR----------HPLVKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISAWSGR 332

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++   PN+Q IP  ++        F +PP +KLI ADYSQIELR+ A I+  T +   ++
Sbjct: 333 MSCWNPNIQQIPRDSEFR----ACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQ 388

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRS 826
              D+H + A+ +    IE++SPQ R+ AK +NF +I+G+    L         + +   
Sbjct: 389 QGEDLHLLTASLVAHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLE 448

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++ +R+F  + GIH + +  K  + + G   T+ GR+  Y                 
Sbjct: 449 QATEFRERFFKAYTGIHRWHQSIKAHLPKEG--RTLAGRKFVY---------YEKAGLPG 497

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
             N P+QG+AADI ++A+  + + L      T ++  +HDE++ E P EE  T + ++  
Sbjct: 498 YYNTPVQGTAADIVKKALGLLIERL--AGTDTYIVGIVHDEILLESPAEEAHTMAALLKS 555

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +ME+A    +  +VP KV++ VS +W E+
Sbjct: 556 TMEEAANAILP-KVPTKVDVLVSESWAEK 583


>gi|298706211|emb|CBJ29252.1| DNA polymerase [Ectocarpus siliculosus]
          Length = 1219

 Score =  332 bits (852), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 152/554 (27%), Positives = 261/554 (47%), Gaps = 58/554 (10%)

Query: 478  RYGISMRGFEDIMLMSYVLDSGRSSH--DIASIAQKWLSYTRKEILKSRKSSIPIDKIS- 534
            ++  ++ G  D  + +++ D+G++    +  ++   WL     +       S    ++  
Sbjct: 650  KHHTTVSGLFDTRVAAWMTDTGKADKALEFEALCVSWLKGEGSDAEGVNAGSGDGGRLPA 709

Query: 535  DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                   A       L L   +  +L   K+L   E+++ P I V++ ME++G+    + 
Sbjct: 710  IVAAVARAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPER 769

Query: 595  LKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
            + + S  +  +L  L+       G + FNL+SP Q+ D+LF  LK PS          +T
Sbjct: 770  VTRFSDALGNHLEGLKRTAVKAVGGRDFNLASPDQVADVLFKHLKLPSPPVKAGSVHAST 829

Query: 654  AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI--------------NKRTQRV 699
            + ++ +   G + ++  ILE+R ++K K+TY D L                       R+
Sbjct: 830  SAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGAARI 889

Query: 700  HTFYSLASTMTGRLASLEPNLQNIPIKTD-----LGQKIRRAFISPPTKKLISADYSQIE 754
            H  ++  S  TGRL+   PNLQ +P  +D      G  +R AF +  +  L++ADYSQIE
Sbjct: 890  HATWNQTSARTGRLSCSRPNLQQMPKGSDPLAGVEGVNVRDAFSATRSFTLMAADYSQIE 949

Query: 755  LRILAHIAKITPLYQVFE------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            +R+LA   +   L  +F                D++R +AA++F      VS + R  AK
Sbjct: 950  MRVLADACRDPGLRNLFATLGGTNDAGASTGGGDVYRKLAAQVFAKEEHGVSDEERNRAK 1009

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT------------- 849
             +   I YG+   ++A +L I  S+A   ++ +   FPGI  ++  T             
Sbjct: 1010 VVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRYGTPCRHQISQ 1069

Query: 850  KNFVRQNGYVETIFGRRIHYDEI-NSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
            + F R+NGYV T+ GRR H  EI NS  ++ +   ER A+N+ +QG+AADI + AM+ V 
Sbjct: 1070 RRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVA 1129

Query: 909  KSLE------DHKLAT-KMLLQIHDELVFEVP--EEEITTASQIIVHSMEKACLPKINLR 959
            + L+      D  L   ++++QIHDELV E P  EE++     ++   ME      + ++
Sbjct: 1130 RRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIK 1189

Query: 960  VPLKVNIKVSNNWQ 973
             PL VN+ V  +W 
Sbjct: 1190 CPLTVNMLVGMSWG 1203


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score =  332 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 139/614 (22%), Positives = 284/614 (46%), Gaps = 58/614 (9%)

Query: 371  IVNTKDIQQWVQKLET-IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I+N K+  + +  +   I      + T  ++ F  K   I I+  +              
Sbjct: 1244 IINDKNYNEKINYIYNGIKYCGLDMETTGLEVFGEKIRLIQIAVENYPVIIY-------- 1295

Query: 430  DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
                         N     IL  L+K   +E+ +KI  N K+D   L     ++    D 
Sbjct: 1296 ----------DMFNITNNNILDGLRKILNDENIVKIIQNGKFDTKFLLYNNFNITNIFDT 1345

Query: 490  MLMSYVLDSGRSSHD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             + S +LD  ++ +   + +I +K+LS     + K +++S+  + + ++    +A  +S+
Sbjct: 1346 YIASKLLDKNKNMYGFKLNNIVEKYLSVY---LDKQQQNSVWNNSLLNNNQLFYAARDSS 1402

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
             +L+L+  L  ++  E +  +   ++   I  +  ME+ GI++D + L + + +I   L 
Sbjct: 1403 CLLKLYKKLSEQITAENM-QIVNDIENKCILPICDMELNGIKVDLESLNKSTDQILNELN 1461

Query: 608  SLEENIY-DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
               + +  +L  +  N++S +Q+   L       +  +  + +      D    N  ++ 
Sbjct: 1462 VERDKLKKELKNDDINVNSQQQILKALQD-----NNVRDLSNKLIDNTSDANLKNFINHN 1516

Query: 667  IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
             +  +  +R+L K+ S +   LP HINK+T ++HT ++   T +GR +S +PNLQ IP +
Sbjct: 1517 AVILLRNYRKLYKLYSAFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ 1576

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                + IR  FI       I AD+ QIEL+I A I     + + + N++D+H + A+ I 
Sbjct: 1577 ----KNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIIT 1632

Query: 787  GVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFP 840
               I +++ + R  AK INF ++YG++   L         +++   +   +   +F  + 
Sbjct: 1633 KKGINEINKEDRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYK 1692

Query: 841  GIHEYIEKTKN-FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            G+  +    K     +     T+  R++ +             +   A+N P+QG+ ADI
Sbjct: 1693 GLSRWHNSVKQTKALEY---STLSNRKVVFPY----------FSFTKALNYPVQGTCADI 1739

Query: 900  TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
             + A++ ++K+L    +  K++L +HDE++ EV ++    A +I+V SME +    +  +
Sbjct: 1740 LKLALVELYKNLR--HINGKIILCVHDEIIIEVDKKHQEEALKILVESMENSASFFLK-K 1796

Query: 960  VPLKVNIKVSNNWQ 973
            V  +V++K++ NW 
Sbjct: 1797 VKCEVSVKIAENWG 1810


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 140/629 (22%), Positives = 279/629 (44%), Gaps = 76/629 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
            +I++  D+  +++KL      +    T  +D    +   I ++                
Sbjct: 4   KRILHPADLVPYMEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAE-------------- 49

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
            DL V      +      + I + L     +   +KI  N K+D   L    I      D
Sbjct: 50  -DLPVLVIDCFSFLPEGRELINAIL-----STSGIKIFQNAKFDLQFLMALDIFPPTLFD 103

Query: 489 IMLMSYVLDSGRSS--HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            ML S +L         ++ ++AQ +L+   +++ K  ++S    ++++SQ+  +A  ++
Sbjct: 104 TMLASQLLRGSGGPVQSNLKALAQHYLN---EDLDKEEQTSNWQGELTESQIL-YAARDA 159

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            ++L+L  ++ P+++   L  +   ++   +  ++ +E  GI +D+   +++  +     
Sbjct: 160 EILLRLRKVMIPQILENHLTQIA-GIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAER 218

Query: 607 LSLEENIYDLSGEKF--------------NLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
            +  + +Y                     N  S + + ++L      P  A  K   +  
Sbjct: 219 KTALDELYTYVERPLMQMSLWGEDVAINQNFESQQFVLNVLHEH-GIPVAATAKQDLYPY 277

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                       +P++K +L +R+ +K  S +       I+  T R+H  Y   S  +GR
Sbjct: 278 RR----------HPLVKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISAWSGR 327

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           ++   PN+Q IP  ++        F +PP +KLI ADYSQIELR+ A I+  T +   ++
Sbjct: 328 MSCWNPNIQQIPRDSEFR----ACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQ 383

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRS 826
              D+H + A+ +    I +++PQ R+ AK +NF +I+G+    L         + +   
Sbjct: 384 QGEDLHLLTASLVAHKPIAEITPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLE 443

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A ++ +R+F  + GIH + +  K  + + G   T+ GR+  Y                 
Sbjct: 444 QATEFRERFFKAYTGIHRWHQSIKAHLPKEG--RTLAGRKFVY---------YEKAGLPG 492

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
             N P+QG+AADI ++A+  + + L      T ++  +HDE++ E P EE  T + ++  
Sbjct: 493 YYNTPVQGTAADIVKKALGLLIERL--AGTDTYIVGIVHDEILLESPAEEAHTMAALLKS 550

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +ME+A    +  +VP KV++ VS +W E+
Sbjct: 551 TMEEAANAILP-KVPTKVDVLVSESWAEK 578


>gi|255024155|ref|ZP_05296141.1| DNA polymerase I [Listeria monocytogenes FSL J1-208]
          Length = 280

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 114/284 (40%), Positives = 158/284 (55%), Gaps = 10/284 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + PE+++
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASGKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQKKRRENILEYAET 239
            ++ L GDS DNIPGIPG+G KTA  LL E+ G +E++L +A  I  KK +E ++E  E 
Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVVENKEL 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           A LS++L  +  D PI   +E    +     ++I  LK + FT 
Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTT 280


>gi|195399626|ref|XP_002058420.1| GJ14321 [Drosophila virilis]
 gi|194141980|gb|EDW58388.1| GJ14321 [Drosophila virilis]
          Length = 2086

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 156/597 (26%), Positives = 273/597 (45%), Gaps = 54/597 (9%)

Query: 404  SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
            +    IA    D               +++   ++   +   T++ +  L          
Sbjct: 1512 AYLAGIAFCLSDNVAFY----------MNMQAEEELEQQPVSTEQKVELLCSLLSRPELT 1561

Query: 464  KIGHNIKYDKLVLHRYGISMRGF----EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK- 518
             + H+ K     L +    ++G     ED  + +++L   ++     ++ Q++       
Sbjct: 1562 LLIHDGKDQLKALRQALPQLKGMQVKLEDPKVGNWLLQPDKTL-SFQNMCQQFAPECTAL 1620

Query: 519  -EILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERL 572
              +  S +  SS  +D  S    +  A   + + + +       L       LL  +  L
Sbjct: 1621 SHLCGSGRGYSSYGLDASSAILGKVRASIEACLSVHILNGQLENLERIGTGQLLKFFREL 1680

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
            + P+   +  ME  G    +  L+++  ++   +  LE  I++L G +FNL S + +  +
Sbjct: 1681 EMPIQMSLCNMECLGFPAQEQRLQRLLQQMLATMKKLEVKIFELHGSRFNLGSTQAVAKV 1740

Query: 633  LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
            L    K         G+  T+ Q LE++   D+PI + IL+ R+LS + +     L    
Sbjct: 1741 LGLHRKA-------NGRISTSRQILEKL---DSPISQLILDHRKLSMVLAKNMQPLLKCC 1790

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-------TDLGQKIRRAFISP-PTKK 744
              +  RVH   S+  T TGR++  EPNLQN+            +    R AF+S      
Sbjct: 1791 --QANRVHG-QSITYTATGRISMSEPNLQNVAKDFLVDLGQEKINISCRSAFVSSNEKHC 1847

Query: 745  LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            L+SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +    VS Q+R   K I
Sbjct: 1848 LLSADFCQLEMRILAHLSQDKALLKVMNSPQDLFTAIAAHWNKIAESDVSEQLRNGTKQI 1907

Query: 805  NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
             + I+YG+    LA  L+    EA    +++   + GI  Y  K   F R NGYVETI G
Sbjct: 1908 CYGIVYGMGMRSLAESLKCTEQEAQMISEQFHLAYAGIKAYASKVVKFARNNGYVETITG 1967

Query: 865  RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA------- 917
            RR + D INS +  ++N  ER AIN+ IQGSAADI + A++ + K++  ++         
Sbjct: 1968 RRRYLDHINSGEPQLKNQAERQAINSTIQGSAADIAKSAILRMEKNIARYREKLGLAENA 2027

Query: 918  TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ++L +HDEL+FEVP ++    ++++  +ME      + L VPL+V +K+  +W E
Sbjct: 2028 VNLVLHLHDELIFEVPADKAKKVAKVLSLTMENC----VKLNVPLRVKLKIGRSWGE 2080


>gi|328782961|ref|XP_001120279.2| PREDICTED: DNA polymerase theta [Apis mellifera]
          Length = 1864

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 156/563 (27%), Positives = 260/563 (46%), Gaps = 54/563 (9%)

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRG-FEDIMLMSYVLDSGRSSHD 504
            KE +   K+   N          K     L+   GI     F D  + +++ D       
Sbjct: 1312 KEQMKLFKELLANTILYVKCFATKEIFKTLYECCGIIASCKFLDPKVANWLYDGNIYEKT 1371

Query: 505  IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV---QEHAIENSNVILQLWLLLRPKLI 561
               + +++       I K          +        +  A   + +   +   L  KL 
Sbjct: 1372 FNDMVKEYFPQGCFIIKKMGTCYDTGPGLCIKSAIPGELRACAEAVLSWHMADKLIDKLE 1431

Query: 562  V--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
                 LL+ ++ ++  +I +++ ME+TG+ +    L+ +S+ I + ++SLEE  Y L G+
Sbjct: 1432 QLSPTLLYTFKDIEMKIIILLAYMELTGLGVCLKSLQDLSSVIREEMISLEERAYALCGK 1491

Query: 620  KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            KFN SS K++G+IL        G K    +          +   D+PI   ++ WR+L+ 
Sbjct: 1492 KFNFSSSKEVGEIL----GLYKGKKISVNK--------AVLGQSDHPISNLVMSWRKLNV 1539

Query: 680  IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD-----LGQKIR 734
             KS     L N   + + R+H      ST+TGR++  EPNLQN+P   +         +R
Sbjct: 1540 TKSKIIYPLLNLA-QHSSRIHGNCVT-STLTGRISMHEPNLQNVPRDFNSKDNSFTISVR 1597

Query: 735  RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
             AFI      ++SADY Q+ELRILAH +K T L  +     DI + +AA+   V+  +V 
Sbjct: 1598 MAFIPTVGNIILSADYCQLELRILAHFSKDTILCNIMRKPGDIFKNIAAKWNHVSENEVD 1657

Query: 795  PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
             +MRRH K + + +IYG+    LA  L +   +A ++++ + + +PGI +++       R
Sbjct: 1658 DKMRRHTKQLCYGMIYGMGVKTLAENLSVDEVKAKEFLESFMNAYPGISKWLNNVLEEAR 1717

Query: 855  QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-- 912
             NGY+ TI  RR  +  + S     ++  ER A+N  +QGSAADI ++AMI + K +   
Sbjct: 1718 INGYITTILERRRMFPGLTSINPMEKSQAERQAVNTKVQGSAADIVKKAMIDIEKRMRFE 1777

Query: 913  ------------DHKLAT----------KMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
                          KL +           ++LQ+HDEL++EV   ++   + I+  SME+
Sbjct: 1778 FSTSLPIMPANSSRKLRSNSKETQHKGGYLVLQLHDELLYEVNIYDLRQVATIVKESMEQ 1837

Query: 951  ACLPKINLRVPLKVNIKVSNNWQ 973
             C     L VPL V +KV   W 
Sbjct: 1838 VC----QLTVPLPVKLKVGPTWG 1856


>gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
 gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum]
 gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
          Length = 1369

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 170/706 (24%), Positives = 320/706 (45%), Gaps = 94/706 (13%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +++ H  L+DG+   Y+A   TP L+   +G+ VN + GF   + K++   +        
Sbjct: 269 KRKKHTVLIDGTLMAYKANATTPSLTN--EGMNVNVLYGFMRSMLKVIDELKP---IDSI 323

Query: 62  AVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            V FD     +FR ++YP+YK+NRP  P  LL QL L+   T +  +   ++ G+E DD+
Sbjct: 324 VVCFDPKGGSSFRRDLYPEYKSNRPPTPPELLQQLLLIPEVTDSINVAFTKVDGYECDDL 383

Query: 121 IATYTYIAEKEGFA----------------------VTIISTDKDLMQLVSPTTCLYDTV 158
           +ATY+ +A +EG                        VTI++ DKD+ QLV+    +Y T 
Sbjct: 384 LATYSKLATQEGNKFIEGNDQYDPTHPESNRFNGSQVTIVTDDKDIYQLVNDNVSVYSTR 443

Query: 159 KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           +   +D + VI K+G  P K V  Q+L GD +DNIPGIP IG KTA  +++++GNL +I+
Sbjct: 444 RGSMVDKQGVIDKFGFEPNKFVTFQSLIGDKVDNIPGIPRIGEKTATDIIKKFGNLNSII 503

Query: 219 INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
            N  ++ Q K  E I    +  R+S +L  L  +V I + L+ +  +  +  +  +FL  
Sbjct: 504 ENIDQLPQ-KFIEPIRSSIDQLRISYQLAKLNDNVSINLNLDDIKYKPIDRTKFYNFLDK 562

Query: 279 LEFTKLINRVATTYDCDAANIE----PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334
             FT + + V       + N E        ++ T +     +E     D  IK  + S+ 
Sbjct: 563 YNFTSIKSSVEKLNKLFSDNQEITTSTSTTNLETIKKNYSKVEFNYIDDENIKFDEISN- 621

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
            ++ +++  +       +E  + +    +         +T+ I   ++K   IG      
Sbjct: 622 -EEINQLKPKNVTMVRDVETARMVVSILMKQKDRFHACDTEVIDIDLKKFSPIG------ 674

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
                   H K I  +I    Q           F D +     D    +    EIL   K
Sbjct: 675 --------HGKMICFSIYCGPQVK---------FHDGNSRVWVDVMD-DIEGDEILQVFK 716

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR---SSHDIASIAQ 510
           ++FE+E  LK+ HN  +D+ + + +GI+++GF  D + M+ + ++ R     + + ++++
Sbjct: 717 EYFEDESILKVWHNYAFDRHIFYNHGINVKGFGGDTLHMARLWNASRMNSGGYSLEALSK 776

Query: 511 KWLSYTR---KEILKSRKSSI-----------PIDKIS-DSQVQEHAIENSNVILQLWLL 555
           + L+  +   K++  +RK              P+++I  DS+   + IE S++  +L  L
Sbjct: 777 ELLNKPKVPIKDLFGTRKIKADGEEGKSIVIPPLERIQRDSKFILNWIEYSSLDSELTWL 836

Query: 556 LRPKLIVE----------KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           LR  + ++           +   Y  + +P   ++++ME  G+++D D LK +  +   +
Sbjct: 837 LRENIHIKLRDMEWNQGTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSLEEKAYTD 896

Query: 606 LLSLEENIYDLS------GEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           +    +   + +       E  N  S  Q+  + F  ++     ++
Sbjct: 897 MEENRKVFLNWAKTHSPDAENMNPVSDAQIQQLFFAPVQNKKTKES 942



 Score =  253 bits (647), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 102/344 (29%), Positives = 162/344 (47%), Gaps = 28/344 (8%)

Query: 655  QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
            ++ EQ+    +  I  +LE   +  + +T+   L    +    R+HT  ++ +T TGRL+
Sbjct: 1030 EEREQMGREASIAINALLELGSIGTLLNTFIIPLQKLAD-SNSRLHTSINV-NTETGRLS 1087

Query: 715  SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            S +PNLQN P       KIR+AF   P   LI ADY Q+ELR+LAHI     +   F+  
Sbjct: 1088 SKKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKSMITAFQVG 1147

Query: 775  LDIHRMVAAEIFGVNIEK-----------------------VSPQMRRHAKTINFSIIYG 811
             D H   A  ++    E                        V    RR AKT+NFSI YG
Sbjct: 1148 GDFHSRTAMGMYPHVKEAIDRGEVLLEWDGEGEPPKPLLKNVYASERRKAKTLNFSIAYG 1207

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
             +   L+    +  +EA + + R++   P +  +  KT     + G+  T+ GR     +
Sbjct: 1208 KTAHGLSQDWGVTLNEAKETLNRWYEDRPEVLVWQRKTIETAHKYGWTRTLMGRYRQLPD 1267

Query: 872  INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            I      ++   ERA+IN P+QG AADI  +AM+ +  +    +L  K+++QIHDEL+ E
Sbjct: 1268 IK-GNKGMKGHAERASINTPLQGGAADIVMKAMLIIEDNKRLKELGFKLIMQIHDELILE 1326

Query: 932  VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             PE+    A  I+++ M         L + L V+ + +  W + 
Sbjct: 1327 GPEQHADEARSIMMNLMSNPLTT--PLLIDLVVDCRYAKTWYDA 1368


>gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis]
          Length = 1661

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 176/773 (22%), Positives = 326/773 (42%), Gaps = 74/773 (9%)

Query: 248  MLRTDVPITIPLEHLILEDCNG-PRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
              R ++   + ++HL   +          L+ L   +L++   +++D          +D 
Sbjct: 909  TERPNIDCQLSMKHLSTSEAERHQEFKDALQGLSTQQLVDIFDSSFDTK--------VDS 960

Query: 307  NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
             +TE+  I  E++    T  K+ Q    S +     +      + LE+ ++         
Sbjct: 961  TSTESAEIFAESDFRSFTVSKSEQQIQDSSENLPEQTATEYAVVNLEKSKEAMIMFCETI 1020

Query: 367  SYTKIVNTKDIQQWVQKLETIGSASFKII--TDTMDAFHSKP------IAIAISTLDQKD 418
               K          V  L+  G  +  I   T      HS+         +A+    Q  
Sbjct: 1021 KKQKQYAISIALDKVTSLKFSGIYALDIENCTACHSKLHSRKSTKISNYTVAVCWDLQN- 1079

Query: 419  DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF--ENEHFLKIGHNIKYDKLVL 476
                 V  +  +  + +     G     K+ +  LK      +   + + +N++    +L
Sbjct: 1080 -----VYVLTGEFKIVSEFVGDGCEAGEKDKVKLLKMILTPNDSSKVVVFYNLRKVIPLL 1134

Query: 477  ----HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
                       +    +   S++L+   S  D+ ++  ++  +          + +    
Sbjct: 1135 FELYKNEAFEFQNRLCLTTASWILNPDGSYWDVKALLTEYSPHDL--------NILQSSW 1186

Query: 533  ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             +DS     +   S     L+  +   L  + L + +  ++ P   VV  +E  GI  + 
Sbjct: 1187 NNDSSNSSTSCFQSAATNVLYPKIFEILKKKNLWNAFLNIELPAQYVVGNIESAGIGFNV 1246

Query: 593  DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK------ 646
            DL   +S  +   L  LE      +G +F+L+SPK++  +LF +L+ P   ++K      
Sbjct: 1247 DLCMAMSTCLKNKLNELEAEAAKEAGHRFSLNSPKEVSKVLFYELQLPPPDESKVSRRRF 1306

Query: 647  -TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP----------NHINKR 695
             + +  +TA+ + +     +P+   ILE+RQLS   + Y   L           N +   
Sbjct: 1307 TSVKQYSTAKHVLENLAQLHPLPGIILEFRQLSAALTNYIYPLLRINRYLCTNCNCVFST 1366

Query: 696  TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ-----KIRRAFISPPTKKLISADY 750
             +R+   Y    T TGRL   EPNLQ +P   ++        IR  F++     L+SAD+
Sbjct: 1367 QERIIGKYDWY-TATGRLIMHEPNLQIVPKFLEIPNGNNTLHIREIFVASEGCTLLSADF 1425

Query: 751  SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            SQ+ELRILAH++  + L ++ +  +D+   +AA++  ++   V+   R  AK I +++IY
Sbjct: 1426 SQLELRILAHLSNDSKLIKILKEKIDVFTEIAAKMNSIDRSAVNEIQRNRAKQICYALIY 1485

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            G+ P  LA +L     +A  +   +   FP +  ++ +T    R  G+  T+  R  ++ 
Sbjct: 1486 GMCPKSLAAELGTDEEQAIQFYNNFKKLFPDVTRWLIETTEKCRSRGFCVTLANRVRYFA 1545

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA----------TKM 920
             I S  +S +   ER AIN  +QGSA+DI + A+  V+ +L+D+              K+
Sbjct: 1546 AIRSSATSDKLHAERQAINTTVQGSASDIFKIALRKVYLALDDYTKKNGQMNNAQTLAKI 1605

Query: 921  LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            + QIHDEL+ EV    +   + I+ HSME A    ++LRV L V IK  N+W 
Sbjct: 1606 IFQIHDELMLEVTNSNVEAVATIVKHSMETA----VSLRVDLPVRIKHGNSWG 1654


>gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 354

 Score =  330 bits (846), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 151/319 (47%), Positives = 209/319 (65%), Gaps = 10/319 (3%)

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           + LE +      I   IL WR LSK+K TY D+L   ++    R+HT +S  +T TGRL+
Sbjct: 26  EVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLS 85

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQNIPI+++ G  IR+AFI+P   K+ISADYSQIELR+LAH+A +    + F N 
Sbjct: 86  SSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANG 145

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            DIH + A ++FGV  +++  Q+RR AK+INF IIYGISPF LA +L I  +EAA+YI  
Sbjct: 146 QDIHEITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAEAAEYINY 203

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           YF  +P I  Y+EK  +  R +GYVET+FGRR    +IN+    IR   ERAAINAP+QG
Sbjct: 204 YFSCYPEIKAYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQFAERAAINAPLQG 263

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +AADI +RA I +   L+      K++LQ+HDEL+ EV +E++   +++I   ME A   
Sbjct: 264 TAADIIKRATIQLFDQLK----VGKIILQVHDELLVEVEDEKVQETAKLIKDIMENA--- 316

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            I + +PL+V IK+ +NW 
Sbjct: 317 -IEISIPLEVEIKIGDNWG 334


>gi|225848972|ref|YP_002729136.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643758|gb|ACN98808.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 298

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 118/288 (40%), Positives = 170/288 (59%), Gaps = 7/288 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRA+YA P LS   DG P  AI GF  ML KL+          + AV
Sbjct: 2   DKKLLLVDGSSYLYRAYYALPPLS-APDGTPTGAIYGFVRMLLKLISTFN----TPYIAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  T R++IY +YKA R + P  L  Q+P ++   +  GI  +EI G+EADDIIAT
Sbjct: 57  VFDRPEKTVRHKIYKEYKATRKETPNDLQVQIPKIKEIIKLLGIKILEIPGYEADDIIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  AE   F V I++ DKD+ QL+     +++ +KEE +D + VI+K+G+ P++ +   
Sbjct: 117 LSKKAENRSFEVIIVTPDKDMNQLIDQHIKIFNPMKEEIVDTQKVIEKYGVSPQQFIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YAETARL 242
            L GDSIDNIPGI G+G KTAA LLQE+G+++ IL N  ++K  K +E+      E  +L
Sbjct: 177 VLVGDSIDNIPGIKGVGPKTAASLLQEFGSIDRILENKDKLKG-KLKESFAAVSKEDIQL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            R LV L  D+ I + +E L  +  +  +L    + L F  LI  +  
Sbjct: 236 VRSLVKLHQDIDIPVEIESLKKDKPDLIKLKEIFEKLGFKSLIKEIEK 283


>gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
          Length = 761

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 143/656 (21%), Positives = 263/656 (40%), Gaps = 69/656 (10%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            ++Y  I   +  Q  +  L      +    T  +D +    + ++++  +        V
Sbjct: 115 PNNYELITTEERFQALIDALNNEEIIAVDTETTGVDVYTDVIVGLSLTLPNADWHVYIPV 174

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
           E +              +      +L  L   F +E   K+ HN  +D  +L R+G  ++
Sbjct: 175 EHVDC------------EQLSRAYVLEGLAPVFNDESIGKVLHNAIFDIAMLRRHGFDLK 222

Query: 485 GFE-DIMLMSYVLDSGRS--------SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           G   D M   ++L+   S        S  +  +A K+L             +    ++  
Sbjct: 223 GVAWDTMTAMHLLNENESDRALGGAGSFKLKDLAPKYLKTPADTFDALFGRNAQFKEVPL 282

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                +A +++ +  +L+   R  +     +L  Y+ ++ P++ V+  +E  G  +D D 
Sbjct: 283 DIALVYAAKDTELTWKLYEFQRYHMAKIPTILDYYQTVEIPLLYVIVDLEANGYILDLDF 342

Query: 595 LKQVSAEISKNLLSLEENI------YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
            K+   ++ K    L + +      +    E  NL+S  Q+   L   +           
Sbjct: 343 AKEYGEKLHKRAEELRKELVAELTPFHEGDEPINLNSTHQMRPALSKAIG--------KD 394

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
                A+   +    D  II  +LE++ + K+  TY D+LP   N  T+R H+ ++   T
Sbjct: 395 LSNMDAKKTLKPLKDDYEIIAKLLEYKNIVKLSGTYIDTLPTKQNPTTERWHSRFNPMGT 454

Query: 709 MTGRLASLEPNLQNIPIKTD---LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           +TGR +S +          +      + R  F  PP K L+ AD+   E+R +A+++   
Sbjct: 455 VTGRFSSGKDEEDKTQQGFNVQNQPPEARPMFGPPPGKLLVGADFKAQEIRCVAYLSGEP 514

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKV-------SPQMRRHAKTINFSIIYGISPFRLA 818
            L   F    D +  +A+  +    E+V         + R+  K    + +YG+S + LA
Sbjct: 515 VLINAFLEERDPYATMASNFYKRPHEEVYKNADGSDTKERKKMKVAWLATLYGMSDYSLA 574

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR------------ 866
             L + + EA ++ +  F   P +  ++++ + FVR+NGYV      R            
Sbjct: 575 DMLGVGKKEATEFKEELFGSMPKLSAWLKENEEFVRKNGYVWADLNARKRRLPDAKLPRK 634

Query: 867 -IHYDEINSPKS-------SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
            I Y + N PK        S  N   R A NA +QGS++  T+  MI  H+    +K   
Sbjct: 635 NIPYGKWNDPKYDDARKHNSRINRALRQATNARVQGSSSIQTKVTMIKAHEYCA-NKPGW 693

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +   +HDEL+FEVPE+     +Q I   M  +        VP   +I+V   W E
Sbjct: 694 ALWSTVHDELIFEVPEDFTWEEAQEIRDIMLNSYRWGDV--VPNGTDIEVMRKWGE 747


>gi|307702768|ref|ZP_07639719.1| putative exonuclease [Streptococcus oralis ATCC 35037]
 gi|307623681|gb|EFO02667.1| putative exonuclease [Streptococcus oralis ATCC 35037]
          Length = 362

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/356 (33%), Positives = 174/356 (48%), Gaps = 14/356 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L L+DGSS  +RAF+A    L R    +GL  NAI GF  ML  +L+       
Sbjct: 1   MDKK-KLLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE---- 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EA
Sbjct: 56  PSHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DDII T   +AEK+ F VTI+S DKDL+QL    T +  + K     E    +++++K G
Sbjct: 116 DDIIGTLGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  N   +K  K +EN+
Sbjct: 176 LTPAQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENL 235

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           +   E A LS+ L  + T  PI I L+ L+    +   L  F   + F +L   +  +  
Sbjct: 236 INDKEQAFLSKTLATIETQAPIEIGLDDLVYNGPDVENLGKFYDEMGFKQLKQALNISST 295

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
               +++  ++D        ++ ++    +   +      L      +    TPQ 
Sbjct: 296 DAPESLDFAIVD--HVSQDMLSADSIFHFELFGENYHTDDLVVLPGPVGINFTPQT 349


>gi|321475795|gb|EFX86757.1| hypothetical protein DAPPUDRAFT_312857 [Daphnia pulex]
          Length = 1781

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 150/545 (27%), Positives = 258/545 (47%), Gaps = 39/545 (7%)

Query: 450  LSYLKKFFENEHFLK---IGHNIKYDKLVLHRYGISMRG---FEDIMLMSYVLDSGRSSH 503
            +S LK + E    LK   I ++I+     L      +     F D+ L  ++L+   SS 
Sbjct: 1249 VSKLKSWLEALIRLKVEFIVYDIRSTANDLRPLFHHLLNEMLFRDVDLCQWLLEPSNSSV 1308

Query: 504  DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
             +  +++ +          S++ S         ++          +L ++  L+ +L  E
Sbjct: 1309 SLPKLSKMY----------SQQGSPTKMYRGREKILHECC----ALLDIFHQLKQRLSKE 1354

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            +LL  +  ++ PM+  + +ME  GI  D+   + +   +  +L  LEE  + L+G  F+L
Sbjct: 1355 ELLQPFVDVEMPMVATMLRMEQIGIAFDRSNCELILQILRNHLKMLEEAAHRLAGRSFSL 1414

Query: 624  SSPKQLGDI-----LFTKLKFP---SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
            +S K++  I     L  + K P        K  Q  + ++         +P+ + ++E+R
Sbjct: 1415 TSTKEVSKIVASLNLCIEEKNPQSFINPLKKKFQPLSVSKASLIKLGRIHPLPRVVVEFR 1474

Query: 676  QLSKIKSTYADSLPNHINKRTQRVHTF--YSLASTMTGRLASLEPNLQNIPIKTDLGQ-- 731
            ++S I  T    L          V            TGR+  ++PNLQ+IP    L    
Sbjct: 1475 KVSAIIQTIICPLLQASTFHVSGVERIAGECEFRNATGRVNIVQPNLQHIPRPFSLSDGR 1534

Query: 732  --KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGV 788
               +R AF +     L+SADYSQ+ELRILAH+++ T L  +    + D+ R + +     
Sbjct: 1535 MINVRSAFHAATGTTLLSADYSQLELRILAHLSEDTGLCSILSKPNGDVFRGIVSVWKKK 1594

Query: 789  NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
              E V+   R+ AK I + I+YG+    LA QL +   EA  ++  +   +P I ++I  
Sbjct: 1595 KQEDVTDDERQQAKQICYGIVYGMGCKSLAEQLEVSEEEAQLFVDSFHSTYPNIQKFITN 1654

Query: 849  TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
            T N  R  G+V T+ GRR     INS  ++ R   ER A+N  IQGSAAD+ + A+I ++
Sbjct: 1655 TINMCRSKGFVITLLGRRRFLPSINSNNAAQRAQAERQAVNTKIQGSAADLVKTAVILLN 1714

Query: 909  KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
            +SL++      ++ QIHDEL+FE+P   +  A++++ H ME A    I +++ + V IK 
Sbjct: 1715 RSLKEKLSDVHLVHQIHDELLFEIPTNCVERAARVVRHCMETA----IPMKIRIPVAIKT 1770

Query: 969  SNNWQ 973
               W 
Sbjct: 1771 GKTWG 1775


>gi|56807538|ref|ZP_00365463.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI)
           [Streptococcus pyogenes M49 591]
          Length = 410

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 162/304 (53%), Gaps = 12/304 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+ +N L L+DGSS  +RAF+A        + H GL  NAI GF  ML  +++  +    
Sbjct: 1   MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E+Y DYKA R K P+    Q P +R    A GI   E++ +EA
Sbjct: 57  PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHYEA 116

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKW 172
           DDII T   +AE+    F VTI+S DKDL+QL    T +    K    E+    ++++K 
Sbjct: 117 DDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEILKKGCRIEEFTPAYLMEKM 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P + + L+AL GD  DNIPG+  IG KT   LL E+G+LE I  +    K  K +EN
Sbjct: 177 GLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKMKEN 236

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   + A LS+ L  + T  PITI L+ ++    +   L  F   ++F +L   +A+  
Sbjct: 237 LINDRDQAFLSKTLATINTASPITIGLDDIVYNGPDVASLSQFYDEMDFVQLKKGLASQM 296

Query: 293 DCDA 296
             + 
Sbjct: 297 PQEP 300


>gi|159486913|ref|XP_001701481.1| DNA polymerase theta [Chlamydomonas reinhardtii]
 gi|158271663|gb|EDO97478.1| DNA polymerase theta [Chlamydomonas reinhardtii]
          Length = 2508

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 136/530 (25%), Positives = 235/530 (44%), Gaps = 101/530 (19%)

Query: 542  AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            A   + ++ ++++   P+L  E LL     L+ P++ ++++ME  GI +   +LK     
Sbjct: 1969 ACRRAAMVRRIYIDKLPRLQSEGLLRPLLELEMPLVRILARMEGEGIALAPQVLKDQRGP 2028

Query: 602  ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT-----AQD 656
            +   L  L    +  +G  F+L+SPK + ++LF  L  P      + Q +          
Sbjct: 2029 LEARLRQLAAKAHLAAGMTFDLNSPKDVSEVLFQHLNLPPPPCAFSNQNQRHPSTKKEVL 2088

Query: 657  LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR------------------ 698
             E      +PII+ +L++R L K+ + + ++L +    + QR                  
Sbjct: 2089 EELEESTHHPIIRLLLDYRTLHKLLTGFVETLYHTAKGQWQRQQHELERCQGQGQQPQRG 2148

Query: 699  ---------------------VHTFYSLASTMTGRLASLEPNLQNIPIKTD--------- 728
                                 +   +   ST TGRLA  EPNLQ +P   +         
Sbjct: 2149 GAATGGAVKPGGPGPVPDVIRLCGTWLHTSTATGRLAMDEPNLQTVPRPVEYTFMASQLS 2208

Query: 729  -------------------------------------LGQKIRRAFISPPTKKLISADYS 751
                                                 L   +R AF++PP   +++ADY 
Sbjct: 2209 QASAGTPPAAGADGAELKLLPGEERGGGAGEGGRSVTLHFNLRSAFVAPPGYMVLAADYK 2268

Query: 752  QIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            QIELR++AH +    L  +  N + D   ++AAE   V +E+V+P++R  AK + + ++Y
Sbjct: 2269 QIELRLMAHFSSDAALCALLRNPAQDPFILLAAEWKKVPVEQVTPEVRVQAKRLAYGMLY 2328

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            G+    LA +L +  +EA +    +    P +  ++ +    VR  GY  T+ GRR +Y 
Sbjct: 2329 GMGTNTLAQELGVSVAEAGELSDNFRRAIPSVDRWMREVVEAVRSCGYTTTLMGRRRYYS 2388

Query: 871  EINSP----KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQI 924
             IN        S R   ER A+N   QGSAAD+ + AM+++ + LE   LA   +M+L +
Sbjct: 2389 RINERASKDARSARAQAERQAVNTVCQGSAADLIKAAMVTLQRRLEAEGLAPHVRMVLMV 2448

Query: 925  HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            HDELVFEV E+ +  A++++   +E     ++ L VPL V +    +W +
Sbjct: 2449 HDELVFEVAEQLLPAAARLVQAVLE----GEVALSVPLPVKLSAGPSWGQ 2494


>gi|253699464|ref|YP_003020653.1| 5'-3' exonuclease [Geobacter sp. M21]
 gi|251774314|gb|ACT16895.1| 5'-3' exonuclease [Geobacter sp. M21]
          Length = 474

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 146/448 (32%), Positives = 223/448 (49%), Gaps = 21/448 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+    L+L+DGSS+IYRA+Y    ++    G+P NA+ GF  ML  LLQ  R E    +
Sbjct: 1   MEISPRLYLLDGSSYIYRAYYGFRDIAT-PGGMPANAVFGFTKMLLDLLQEHRPE----Y 55

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           FAV+FD P   TFR EIYP+YKA R   PE L+ QLP +R   QA  IP +E   FEADD
Sbjct: 56  FAVVFDPPRENTFRREIYPEYKAQRDAAPEDLVSQLPYIRKILQALNIPILETSRFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT       EG  VT+++ DKDL+Q+V+    L DT+K ++   + V++++G+PPE +
Sbjct: 116 VIATLATRFAAEGTDVTVVTGDKDLLQIVTGRISLLDTMKGKRSGPQQVVERFGVPPELV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             +  L GDS DNIPG+PGIG K AA L+Q++G+LE +L   S +  K RREN+  +A+ 
Sbjct: 176 ADVLGLAGDSGDNIPGVPGIGEKIAAKLVQQFGSLEKVLEWRSLVNGKTRRENLKTHAKQ 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS++L  +R D P+ + L  L     N   L+S L+ L F  L       +      +
Sbjct: 236 AILSKELATVRYDAPVDVSLAELQSRPANVADLVSLLRELGFAAL----EVAFTPPPPGV 291

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             +  D +  ++        +      K  + S     ++    E       LE L   S
Sbjct: 292 VEIYSDGSGRDSGPGGYGVILRYGEHEK--ELSGFEPSSTSQRMELIAAIRGLEALNAPS 349

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + +DS   +     + +W++     G        DT DA  ++ +   ++ L  K  
Sbjct: 350 RVRVFSDSQYLVRG---MSEWLKGWIRAGRL------DTPDALKNQDLWRQLADLSAKHK 400

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTK 447
             ++          +   D   K    +
Sbjct: 401 VQWEWVAGHAGHPFNERCDKLAKRAAEE 428


>gi|195069821|ref|XP_001997038.1| GH25245 [Drosophila grimshawi]
 gi|193905759|gb|EDW04626.1| GH25245 [Drosophila grimshawi]
          Length = 2235

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 159/596 (26%), Positives = 267/596 (44%), Gaps = 58/596 (9%)

Query: 408  AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
             +A    D                  H   DS          +  L +    +    + H
Sbjct: 1663 GVAFCLADNVVYWLNMQSEQGQQQQDHLISDSMK--------VEQLCRLMGRQELTLLTH 1714

Query: 468  NIKYDKLVLH-------RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK-- 518
            + K     L        R  + +   ED  + +++L   ++     ++ Q++        
Sbjct: 1715 DGKEQLKTLRQVVPQLERMNVQL---EDPKVGNWLLQPDKTL-SFQNLCQQFAPECTALS 1770

Query: 519  EILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLD 573
             +  S +  SS  +D  S    +  A   + V + +       L       LL  +  L+
Sbjct: 1771 NLCGSGRGYSSYGLDASSAIMAKVRASIEACVTVHILNGQIENLERIGTGQLLKFFRELE 1830

Query: 574  KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
             P+   +  ME  G       L+ +  ++   +  LE  IY+L G +FNL S + +  +L
Sbjct: 1831 MPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSRFNLGSTQAVAKVL 1890

Query: 634  FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
                K         G+  T+ Q LE++   D+P+ + IL +R+LS + S     L     
Sbjct: 1891 GLHRKA-------NGRISTSRQILEKL---DSPMSQLILNYRKLSMLLSKNMQPLLKCC- 1939

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-------GQKIRRAFISPPTKK-L 745
             +  RVH   S+  T TGR++  EPNLQN+    ++           R AF     K+ L
Sbjct: 1940 -QANRVHG-QSITYTATGRISMSEPNLQNVAKDFEIQLGAEKINISCRSAFAPMDGKRCL 1997

Query: 746  ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            +SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +   +VS Q+R   K I 
Sbjct: 1998 LSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNKIPESEVSEQLRNGTKQIC 2057

Query: 806  FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
            + I+YG+    LA  L+    EA    +++   + GI  Y  K   F R NGYVETI GR
Sbjct: 2058 YGIVYGMGMRSLAESLKCTEQEAQMISEQFHLAYAGIKAYAMKVVKFARNNGYVETITGR 2117

Query: 866  RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-------T 918
            R + D INS +  I+N  ER AIN+ IQGSAADI + A++ + K++  ++          
Sbjct: 2118 RRYLDHINSGEPQIKNQAERQAINSTIQGSAADIAKSAILRMEKNIGRYREKLGLAENAV 2177

Query: 919  KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++L +HDEL+FEVP ++    ++++  +ME      + L VPL+V +K+  +W +
Sbjct: 2178 NLVLHLHDELIFEVPVDKAKKVAKVLSLTMENC----VKLSVPLRVKLKIGRSWGD 2229


>gi|317471924|ref|ZP_07931258.1| 5'-3' exonuclease [Anaerostipes sp. 3_2_56FAA]
 gi|316900590|gb|EFV22570.1| 5'-3' exonuclease [Anaerostipes sp. 3_2_56FAA]
          Length = 479

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 104/314 (33%), Positives = 175/314 (55%), Gaps = 11/314 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  L L+DG S + RAFYA P ++    GL  NAI GF N+++K L   +     +HFAV
Sbjct: 2   EKKLMLIDGHSILNRAFYALPDMTNSK-GLHTNAILGFLNIMFKFLDEEK----PTHFAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD  A TFR+E++ +YK  R  +PE L  Q+P+++   +A  IP +  +G+EADD++ T
Sbjct: 57  AFDLSAPTFRHEMFKEYKGTRKPMPEELREQVPVIKEVLKAMDIPLMMEEGYEADDLLGT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
            + I EKEG+ V IIS D+DL+QL +    +     +      E    + V++ +G+ P+
Sbjct: 117 MSVIGEKEGYQVRIISGDRDLLQLATENVQIRIPKTKGGGNVVEDYFAKDVMETYGVTPK 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DNIPGIPGIG KTA+ +++E+ ++EN   +   +  K+ +  + E+ 
Sbjct: 177 EFIDMKALMGDASDNIPGIPGIGEKTASKIIKEFKSIENAYEHIEEVMPKRAKNKLEEFY 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
           +   LS++L  ++ D PI +  E     D         LK LEF  ++ +    +  + +
Sbjct: 237 DQGVLSKELATIKLDCPIELSFEDAKFNDIFTGEAYQLLKQLEFKSVLKKFDGEHGEEFS 296

Query: 298 NIEPVVLDINTTEN 311
                V +++  + 
Sbjct: 297 VNLKKVFELDEADQ 310


>gi|325000598|ref|ZP_08121710.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 325

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 149/304 (49%), Gaps = 10/304 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  + R   G   NA+ GF +ML  LL++       +H 
Sbjct: 27  DRPRLLLLDGHSLAYRAFFALPAENFRTGTGQTTNAVYGFTSMLINLLRDEE----PTHL 82

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    TFR+E + DYKANR   P+    Q+ L++    A  IP   + GFEADD+I
Sbjct: 83  AVAFDVSRKTFRSERFADYKANRTTTPDDFRGQIDLIKEVLGALNIPVFAVDGFEADDLI 142

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE +GF V I + D+D  QLV+    +    +      +ID   V K++G+ P 
Sbjct: 143 ATLATQAEGQGFQVLITTGDRDAFQLVTEDVTVLYPKRGVSDLGRIDPAEVDKRYGLTPT 202

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+P IPG+G KTAA  ++E+G+L  +      +K  K  +N+    
Sbjct: 203 QYPDFAALRGDPSDNLPSIPGVGEKTAAKWVREFGSLAELTDRVDEVKG-KAGDNLRANL 261

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
               L+R+L  L  DV +    E L +   +   +      LEF  L  R+ +T      
Sbjct: 262 ANVLLNRQLTELVRDVDLGAGPEQLEVRAWDRDAVHRLFDELEFRVLRERLFSTLSSAEP 321

Query: 298 NIEP 301
             E 
Sbjct: 322 EAEE 325


>gi|315122836|ref|YP_004063325.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496238|gb|ADR52837.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 233

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 203/228 (89%), Positives = 217/228 (95%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           MQKE HLFLVDGSSFIYRAFYATP LSRK DGLPVNAIAGFCNMLWKLLQNSR E+IASH
Sbjct: 1   MQKEKHLFLVDGSSFIYRAFYATPALSRKRDGLPVNAIAGFCNMLWKLLQNSRSENIASH 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           F+VIFDYP  TFRNEIYPDYKANRP+IPEMLLPQLPLVRLATQAFGIP+IEIQGFEADDI
Sbjct: 61  FSVIFDYPDKTFRNEIYPDYKANRPQIPEMLLPQLPLVRLATQAFGIPSIEIQGFEADDI 120

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IATY  IAEK GF+VTI+STDKDLMQLVSPTTCLYD++KEEKIDIE+VIKKWG+PPEKMV
Sbjct: 121 IATYASIAEKRGFSVTIVSTDKDLMQLVSPTTCLYDSIKEEKIDIENVIKKWGVPPEKMV 180

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           CLQAL+GDSIDNIPGIPGIGYKTAA LLQEYGNL+NIL NA++IKQKK
Sbjct: 181 CLQALSGDSIDNIPGIPGIGYKTAASLLQEYGNLDNILNNANQIKQKK 228


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 158/672 (23%), Positives = 295/672 (43%), Gaps = 112/672 (16%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            N  Y  I + + +   +++LET       I T  +D   S+   I I+           
Sbjct: 43  PNADYEIISDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLIQIA----------- 91

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GIS 482
                  + +   +  T K          L++F E+    K+GHN+ ++   L ++ GI+
Sbjct: 92  --APNRPVILIEFRGITNK--------ETLRRFIEHPKIPKVGHNLAFEIQFLTKHLGIN 141

Query: 483 MR--GFEDIMLMSYVLDSGR-------------------------------------SSH 503
                + D MLMS +L +G                                       S+
Sbjct: 142 PAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDLTRSIKNKKKLKQELNRNLPGSY 201

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            +  +  + L Y+  + L+      P+ +    +  ++A  ++ V+L L   LR K+I  
Sbjct: 202 SLMRVVARELGYSLDKSLQVSDWGKPLTQ----EQLQYAANDAAVVLPLREALRNKIIDN 257

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI---------- 613
           +L    + ++   +  V+QM + G+ +D D   +++ EI        +            
Sbjct: 258 QLTDAIQ-VELGALARVAQMGLMGMGLDLDRWGELAKEIETRREDAAKIACQVLKPDHAQ 316

Query: 614 YDLSGEK--FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            +L G +   NL S +Q+   L  +L   +          +T++D       ++P +  I
Sbjct: 317 LNLFGGEASINLDSNEQVIAAL-ARLGIHT---------DSTSKDTLDKLSENHPEVFTI 366

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           +E+R  SK  S++ + LP  +N  T R+H   +     +GR +   PNLQ IP +    +
Sbjct: 367 IEYRHWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAASGRFSFSNPNLQQIPRE----R 422

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           + R  F+  P  KLI ADYSQIELRI A IA  + +   + N  D+HR+ AA + G +I+
Sbjct: 423 QYRSCFVPAPGYKLIIADYSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDID 482

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           +V+ Q R+  K +NF +IYG+   +L         + +   EA  +   +F  +PG+H++
Sbjct: 483 EVTKQERQLGKAVNFGLIYGMGATKLRIYAETNYGVSMTFDEAQRFRDNFFKGYPGLHQW 542

Query: 846 IEKTKNFVRQNGY--VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            + T   +R      + T+ GR   + +              + +N P+QG++ADIT+ A
Sbjct: 543 HQDTACKLRTTKVKDIRTLSGRLRRWKD---------EPPLTSLLNTPVQGTSADITKLA 593

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           +  ++  L++  +    ++ +HDE+V EVPE+ +   S ++  +M  A    +   VP+ 
Sbjct: 594 LHKLNSDLDE--IGGFPIVVVHDEIVLEVPEDHVAEGSAMLEEAMVSAGKRFLK-SVPVV 650

Query: 964 VNIKVSNNWQEE 975
           V   ++++W E+
Sbjct: 651 VEAAIADSWAEK 662


>gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 261

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 115/265 (43%), Positives = 163/265 (61%), Gaps = 4/265 (1%)

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQNIP++ D G++IR+ FI  P+ K  SADYSQIELRI+AH++    + + F
Sbjct: 1   RLSSSDPNLQNIPVRDDDGKEIRKCFIPEPSCKFFSADYSQIELRIMAHLSCDENMMEAF 60

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               DIHR  A++I+   +++V+   R+ AK  NF IIYGI+ + LA ++ I   EA   
Sbjct: 61  REGFDIHRATASKIWKEAMDEVTDSQRKQAKQANFGIIYGITTYGLAQRMGIDNGEARQL 120

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           I  YF  FP + EY+EK K   R+ GY ET+FGRR +  +INS   ++R   ER AINAP
Sbjct: 121 IDDYFTTFPKVKEYMEKAKEIARERGYAETLFGRRRYLPDINSKNGTVRGFAERNAINAP 180

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           IQGS ADI + AMI + K  +   + ++M+LQ+HDEL F V  +E     +I++  M+ A
Sbjct: 181 IQGSEADIIKLAMIRIWKRFKKEGIRSRMILQVHDELNFSVYPDEAEKVEKIVLEEMQGA 240

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 L VPL       +NW E +
Sbjct: 241 ----YPLHVPLIAEAGWGDNWLEAH 261


>gi|195053948|ref|XP_001993888.1| GH22128 [Drosophila grimshawi]
 gi|193895758|gb|EDV94624.1| GH22128 [Drosophila grimshawi]
          Length = 2218

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 157/596 (26%), Positives = 269/596 (45%), Gaps = 58/596 (9%)

Query: 408  AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
             +A    D            ++++     Q        +   +  L +    +    + H
Sbjct: 1646 GVAFCLADNV--------IYWLNMQSEEGQQQQDHLISSSMKVEQLCRLMGRQELTLLTH 1697

Query: 468  NIKYDKLVLH-------RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK-- 518
            + K     L        R  + +   ED  + +++L   +      ++ Q++        
Sbjct: 1698 DGKEQLKTLRQVLPQLERMNVQL---EDPKVGNWLLQPDKML-SFQNLCQQFAPECTALS 1753

Query: 519  EILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLD 573
             +  S +  SS  +D  S    +  A   + V + +       L       LL  +  L+
Sbjct: 1754 NLCGSGRGYSSYGLDASSAIMAKVRASIEACVTVHILNGQIENLERIGTGQLLKFFRELE 1813

Query: 574  KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
             P+   +  ME  G       L+ +  ++   +  LE  IY+L G +FNL S + +  +L
Sbjct: 1814 MPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSRFNLGSTQAVAKVL 1873

Query: 634  FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
                K         G+  T+ Q LE++   D+P+ + IL +R+LS + S     L     
Sbjct: 1874 GLHRKA-------NGRISTSRQILEKL---DSPMSQLILNYRKLSMLLSKNMQPLLKCC- 1922

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-------GQKIRRAFISPPTKK-L 745
             +  RVH   S+  T TGR++  EPNLQN+    ++           R AF     K+ L
Sbjct: 1923 -QANRVHG-QSITYTATGRISMSEPNLQNVAKDFEIQLGAEKINISCRSAFAPMDGKRCL 1980

Query: 746  ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            +SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +   +VS Q+R   K I 
Sbjct: 1981 LSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNKIPESEVSEQLRNGTKQIC 2040

Query: 806  FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
            + I+YG+    LA  L+    EA    +++   + GI  Y  K   F R NGYVETI GR
Sbjct: 2041 YGIVYGMGMRSLAESLKCTEQEAQMISEQFHLAYAGIKAYAMKVVKFARNNGYVETITGR 2100

Query: 866  RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-------T 918
            R + D INS +  I+N  ER AIN+ IQGSAADI + A++ + K++  ++          
Sbjct: 2101 RRYLDHINSGEPQIKNQAERQAINSTIQGSAADIAKSAILRMEKNIGRYREKLGLAENAV 2160

Query: 919  KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             ++L +HDEL+FEVP ++    ++++  +ME      + L VPL+V +K+  +W +
Sbjct: 2161 NLVLHLHDELIFEVPVDKAKKVAKVLSLTMENC----VKLSVPLRVKLKIGRSWGD 2212


>gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium]
          Length = 283

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 126/285 (44%), Positives = 180/285 (63%), Gaps = 3/285 (1%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYS 751
           N++T RVHT Y+ A  +TGRL+S  PNLQNIP++T+ G++IR+AF+       LISADYS
Sbjct: 1   NRKTGRVHTSYNQAVAVTGRLSSNNPNLQNIPVRTERGREIRKAFVPRDENHLLISADYS 60

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           QIELRI+A I+    + + F+   DIH   AA+++ +    V+ +MR  AK++NF IIYG
Sbjct: 61  QIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYNIEEADVTKEMRYKAKSVNFGIIYG 120

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
              F LA  L+I RSEA + I  Y  +FP I +Y++    F +QNGYVET++GR+    +
Sbjct: 121 QGAFGLAENLKITRSEAKEIIDNYKKQFPNIQQYMDAQMKFAQQNGYVETLWGRKRWLKD 180

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           INS   ++R   ER AIN PIQG+AAD+ + AMI +H+  +D    +KM+LQ+HDELVF+
Sbjct: 181 INSGNFTVRGYAERNAINMPIQGTAADMIKLAMIKIHREFKDRGFKSKMILQVHDELVFD 240

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             ++E+     II+  M+ A        VP    I V  NW E +
Sbjct: 241 AWKDEVDIIKPIIIECMQSALPLPN--DVPANAEIGVGVNWLEAH 283


>gi|188997399|ref|YP_001931650.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932466|gb|ACD67096.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 299

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 116/289 (40%), Positives = 174/289 (60%), Gaps = 7/289 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N + L+DGSS++YRA+YA P L+   DG P  A+ GF  ML K L          + AV
Sbjct: 2   KNKVLLIDGSSYLYRAYYALPPLT-APDGRPTGAVYGFIRMLLKTLSVFN----TPYVAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD P  T R+E + +YKA R + P+ L  Q+P+++   Q  GI  +EI G+EADDIIAT
Sbjct: 57  AFDLPGKTLRHEKFSEYKATRKETPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  AEKEG+   I++ DKD+ QL+S    +++ VKEE +D E + +K+GI P++ +   
Sbjct: 117 LSKKAEKEGYEAIIVTPDKDMNQLISDNIKIFNPVKEELLDKEKIKEKYGIHPQQFIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YAETARL 242
            + GD++DNIPGI GIG KTAA LLQE+G+LENIL N  ++K  K +E+  E   E  + 
Sbjct: 177 TMIGDAVDNIPGIKGIGPKTAAALLQEFGSLENILENVDKLKG-KLKESFKELDKEQLQR 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            ++++ L  ++ I I +E L     +  +L    + L F  L+  V  +
Sbjct: 236 MKEIIKLDANIEINIKIEDLKKSKPDLEKLKQIFQELGFKSLLKDVEKS 284


>gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
 gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
          Length = 383

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 138/393 (35%), Positives = 209/393 (53%), Gaps = 16/393 (4%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME  G +ID    K++  E    L  LE  I DL G  FNL+SPKQLG++L+ KL  P  
Sbjct: 3   MEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKN 62

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
                    +T +         +P I  ILE+R+L+K+ +TY   L    +K  + +HT 
Sbjct: 63  KS------HSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDK-IHTT 115

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHI 761
           +    T TGRL+S  PNLQNIP+++  G  IR+ FI+      L+  DYSQIELR+LAH 
Sbjct: 116 FIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHF 175

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L + F    DIH   +  +FG   E ++ + R  AK+INF ++YG+   +L+  L
Sbjct: 176 SQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETL 232

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            IP +EA  YI+ YF RFP I +Y+   K  + +     T+ GR   +D  N     ++ 
Sbjct: 233 NIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEILKTSKAFTLLGRYRVFD-FNGVNDYVKG 291

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
              R  +NA  QGSA+D+ +  M+ V +  + +  + ++LLQ+HDEL+FE+ E+      
Sbjct: 292 NYLREGVNAIFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDELIFEIEEKNAPELQ 350

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           Q I   +         LRVPL+ +  ++  W E
Sbjct: 351 QEIQRIL---NDEVYPLRVPLETSAFIAKRWNE 380


>gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158]
 gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158]
          Length = 248

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 116/252 (46%), Positives = 163/252 (64%), Gaps = 4/252 (1%)

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           ++T  G++IR AFI+ P  +++SADYSQIELRI+AHI+    L + F    DIHR  AAE
Sbjct: 1   MRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAE 60

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +FGV   +V+   RR AK INF +IYG+S F LA+ L I R  A  YI RYF R+PG+ +
Sbjct: 61  VFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAQ 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y+E T+   ++ GYVET+FGRR+   EIN      R   ERAAINAP+QG+AAD+ + +M
Sbjct: 121 YMENTRASAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSM 180

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           I+V + L   KLA++M++Q+HDELV EVP++E+    + +   M         L+VPL  
Sbjct: 181 IAVDQWLTRDKLASRMIMQVHDELVLEVPDDELPLVREKLPEMMCGVA----KLKVPLVA 236

Query: 965 NIKVSNNWQEEN 976
            +    NW+E +
Sbjct: 237 EVGAGANWEEAH 248


>gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
 gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
          Length = 1054

 Score =  326 bits (835), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 177/765 (23%), Positives = 302/765 (39%), Gaps = 157/765 (20%)

Query: 355  LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF---KIITDTMDAFHSKPIAIAI 411
            LQ L+    +      I + +  ++ +QKLE +G   F         +D     P+   +
Sbjct: 302  LQGLTSADDDTRPVNLIQDEEGARRVLQKLEELGPNHFHACDTEVAQIDVKAVGPVGNGV 361

Query: 412  STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
             T                 + V     + G        L   K+F E++++LK+ HN  +
Sbjct: 362  VTCLSLYSGPDVDYGNGPYVWVDNLDSAEGT-------LQLFKEFLESKNYLKVWHNYSF 414

Query: 472  DKLVLHRYGISMRGFE-DIMLMSYVLDSGR---SSHDIASIAQKWL---SYTRKEILK-- 522
            D+ VL  +GI+++G   D M M+ + ++ R     + + S+    L       KE+    
Sbjct: 415  DRHVLFNHGINVQGLGGDTMHMARLWNTARFQNGGYSLESLTADLLLQRKKPMKELFGIP 474

Query: 523  --SRKSSIPIDKISDSQVQ------------EHAIENSNVILQLWLLLRPKLIVE----- 563
               +  S   ++I  +  +             +++ ++     L  +L+ KL        
Sbjct: 475  KLKKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAESTWFLHRVLQDKLDQTFWFEK 534

Query: 564  ---------KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
                      +   Y     P  + ++ +E  G+ +D + L  V  +  ++   LE+ + 
Sbjct: 535  PNGGESQVGSMYEFYREYIVPFGECLTDIERRGMHVDLEYLAGVEKQALEDRARLEKLVL 594

Query: 615  DLSG------EKFNLSSPKQLGDILF---------------------------------- 634
              +       E+ NL S  Q   +LF                                  
Sbjct: 595  QWASRYCEESERINLYSAAQKQQLLFAPYFNKKKKEQVLPAERSFEVENTEGFIEEGKQK 654

Query: 635  ---------TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI------------------ 667
                       L  P    T +G    +A+ L+ +    +P                   
Sbjct: 655  AKKKRNITIRGLGIPPTHFTASGLPAASAEVLKDLA--GHPEANPPQYGRAYGHFEDKEE 712

Query: 668  -------IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                   +K + +   ++ + + +   L    +    RVH   +L +T TGRL+S +PNL
Sbjct: 713  GAAACVALKALFDISSINTMLNNFILPLQELAD-SNSRVHCSLNL-NTDTGRLSSRKPNL 770

Query: 721  QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
            QN P       KIR AF +PP KKLI ADYSQ+ELR++AHI +   + + F+   D H  
Sbjct: 771  QNQPAMGKDRYKIRDAFTAPPGKKLIVADYSQLELRLMAHITQCKAMIEAFKAGGDFHSR 830

Query: 781  VAAEIFGVNIEKV-------------------------SPQMRRHAKTINFSIIYGISPF 815
             A  ++    + V                             R++AK +NFSI YG + F
Sbjct: 831  TAMGMYPYVAKAVENGEALLEWDHTTGKEPPAPLLKDKYGDERKNAKVLNFSIAYGKTAF 890

Query: 816  RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
             LA    + R EAAD +++++     + ++ +K     R  GY  T+ GR     +    
Sbjct: 891  GLAKDFNVSRKEAADTLEKWYSDRGEVRDWQKKAIETARTFGYTRTLLGRYRRLPDAMLR 950

Query: 876  KSSI-----RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
              S+     R   ERAAIN PIQG+AAD+  +AM+ VH S    +L   M+ QIHDE++ 
Sbjct: 951  DDSMTSKKARGHAERAAINTPIQGAAADVVMQAMLQVHHSPRLRELGWGMVSQIHDEIIV 1010

Query: 931  EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            E PEE +  A +++VH ME        L V L+V+  V ++W + 
Sbjct: 1011 EGPEESVDEAMKLVVHLMENPFQK--PLSVALEVDANVDDSWFKA 1053


>gi|237756074|ref|ZP_04584652.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691767|gb|EEP60797.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 299

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 115/289 (39%), Positives = 173/289 (59%), Gaps = 7/289 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N + L+DGSS++YRA+YA P L+   DG P  A+ GF  ML K L          + AV
Sbjct: 2   KNKVLLIDGSSYLYRAYYALPPLT-APDGRPTGAVYGFIRMLLKTLSVFN----TPYVAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD P  T R+E + +YKA R + P+ L  Q+P+++   Q  GI  +EI G+EADDIIAT
Sbjct: 57  AFDLPGKTLRHEKFSEYKATRKETPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            +  AE EG+   I++ DKD+ QL+S    +++ VKEE +D E + +K+GI P++ +   
Sbjct: 117 LSKKAEIEGYEAIIVTPDKDMNQLISDNIKIFNPVKEELLDKEKIKEKYGIYPQQFIDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YAETARL 242
            + GD++DNIPGI GIG KTAA LLQE+G+LENIL N  ++K  K +E+  E   E  + 
Sbjct: 177 TMIGDAVDNIPGIKGIGPKTAAALLQEFGSLENILENVDKLKG-KLKESFKEVDKEQLQR 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            ++++ L  ++ I I +E L     +  +L    + L F  L+  V  +
Sbjct: 236 MKEIIKLDANIEINIKIEDLKKSKPDLEKLKQIFQELGFKSLLKDVEKS 284


>gi|197117169|ref|YP_002137596.1| ribonuclease H [Geobacter bemidjiensis Bem]
 gi|197086529|gb|ACH37800.1| ribonuclease H [Geobacter bemidjiensis Bem]
          Length = 474

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 138/384 (35%), Positives = 203/384 (52%), Gaps = 13/384 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+    L+L+DGSS+IYRA+Y    ++    G+P NAI GF  ML  LLQ  R E    +
Sbjct: 1   MEISPRLYLLDGSSYIYRAYYGFRDIAT-PGGMPANAIFGFTKMLLDLLQEHRPE----Y 55

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           FAV+FD P   TFR E+YPDYKA R  +PE L+ QLP +R   Q   IP +E   FEADD
Sbjct: 56  FAVVFDPPRENTFRREMYPDYKAQRDAMPEDLVSQLPYLRKILQTLNIPILEASRFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT       EG  VT+++ DKDL+Q+V+    L DT+K ++   + V++++G+PPE +
Sbjct: 116 VIATLAARFAAEGADVTVVTGDKDLLQIVTDRIALLDTMKGKRSGPQQVVERFGVPPELV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             +  L GDS DNIPG+PGIG K AA L+Q++G+LE +L   S +  K RREN+  +AE 
Sbjct: 176 ADVLGLAGDSGDNIPGVPGIGEKIAAKLVQQFGSLEKVLEWRSLVNGKSRRENLKTHAEQ 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A LS+ L  +R D P+ + L  L     +   L+S L+ L F  L       +      I
Sbjct: 236 AILSKALATVRYDAPVDVSLAELQSRPASVQELVSLLRELGFAAL----EVAFTPPPPGI 291

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             +  D +  ++        +      K  + S     ++    E       LE L   S
Sbjct: 292 VEIYSDGSGRDSGPGGYGVILRYGEHEK--ELSGFEPSSTSQRMELIAAIRGLEALNAPS 349

Query: 360 QYPINNDSYTKIVNTKDIQQ-WVQ 382
           +  + +DS   +    +    W++
Sbjct: 350 RVRVFSDSQYLVRGMSEWLAGWIR 373


>gi|302546244|ref|ZP_07298586.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463862|gb|EFL26955.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 388

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 98/285 (34%), Positives = 147/285 (51%), Gaps = 10/285 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
               L L+DG S  YRAF+A P  +     G   NAI GF +ML   L++ +     +H 
Sbjct: 29  DRPRLLLLDGHSLAYRAFFALPAENFSTTSGQTTNAIYGFTSMLANTLRDEQ----PTHL 84

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV FD    T+R+E + +YKANR K P+    Q+ L+        +    + GFEADD+I
Sbjct: 85  AVAFDVSRKTWRSEQFAEYKANRSKSPDEFKGQVELIGELLDTMNVTRFAVDGFEADDVI 144

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
           AT    AE EGF V I++ D+D  QLVS    +    K      +   E V +K+G+ P 
Sbjct: 145 ATLATQAEAEGFEVLIVTGDRDSFQLVSDHVTVLYPTKGVSELTRFTPEKVQEKYGLTPR 204

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +     AL GD  DN+PGIPG+G KTAA  + ++G+ ++++     +K  K  E + ++ 
Sbjct: 205 QYPDFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFQDLVERVDEVKG-KVGEKLRDHL 263

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
           E+ +L+R+L  L  DV +    + L     +   L   + ALEF 
Sbjct: 264 ESVKLNRQLTELVRDVELGTGPDGLKRVPYDRAALGVIMDALEFR 308


>gi|227520123|ref|ZP_03950172.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
 gi|227072467|gb|EEI10430.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
          Length = 428

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 13/302 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L LVDG+S  +RAF+A        +  +GL  NAI  F NM   ++Q      +
Sbjct: 1   MTKK-KLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKE----M 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H  V FD    TFR E Y +YKA R K P     Q+P +R   +  G+   E+  +EA
Sbjct: 56  PTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW- 172
           DDII T     +K+ + V ++S D+DL QL + T  +  TVK     E    EH+ +K+ 
Sbjct: 116 DDIIGTLANKVDKDEYDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYD 175

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++ ++ L GD+ DNIPG+  IG KTA  LL++YG++E +  N   +K+ K +EN
Sbjct: 176 GLTPKQIIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKEN 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           ++   E A LS++L  +  + P+ + +E L  E  N  +L+ F K ++F + + ++  T 
Sbjct: 236 LINDKEQAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDITE 295

Query: 293 DC 294
           + 
Sbjct: 296 EP 297


>gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus]
          Length = 822

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 141/546 (25%), Positives = 251/546 (45%), Gaps = 86/546 (15%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLS 514
             +  N K + + VL  YG       +  F   D  + ++++D   ++     +  K L 
Sbjct: 316 PVVCFNAKDFVRTVLQLYGEDGSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDLVAKHLE 375

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +      + K S    + S + + ++   N  ++  L + L  KL    L  ++  L+ 
Sbjct: 376 KSI-----TVKPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLEL 430

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   I +D++ +++ SA +   L  LE+  + ++GE+F + S  QL +ILF
Sbjct: 431 PLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILF 490

Query: 635 TKLKF------PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK           +T      +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 491 GKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFIDGL 550

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ-------------NIPIKTDLGQKIRR 735
             ++ K +  + + ++   T+TGRL++  PN+Q             N   K +    I  
Sbjct: 551 LAYMKKGS--ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISP 608

Query: 736 --AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
              F+S      ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   + IE
Sbjct: 609 RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIE 668

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+   R   K + +S++YG                                        
Sbjct: 669 RVTHMDREQTKKVVYSVVYGA--------------------------------------- 689

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
                GYV +I GRR     I +    +R   ER A+N  +QGSAAD+ + AMI +  ++
Sbjct: 690 -----GYVTSILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAV 744

Query: 912 EDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIK 967
                L  +++ QIHDEL+FEV + ++   + ++   ME        ++ L+VPLKVN+ 
Sbjct: 745 ATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLS 804

Query: 968 VSNNWQ 973
           V  +W 
Sbjct: 805 VGRSWG 810


>gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7]
 gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7]
          Length = 2016

 Score =  324 bits (831), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 147/598 (24%), Positives = 283/598 (47%), Gaps = 55/598 (9%)

Query: 385  ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
            + I      I T  ++ F      I I+  +                           N 
Sbjct: 1462 KDIKYCGLDIETTGLEVFDENIRLIQIAVENYPVIIY------------------DMFNI 1503

Query: 445  LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD 504
              K+IL  L+K  EN++ +KI  N K+D   L      +    D  + S +LD  ++ + 
Sbjct: 1504 NKKDILDGLRKVLENKNIIKIIQNGKFDAKFLLHNNFKIENIFDTYIASKLLDKNKNMYG 1563

Query: 505  --IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
              + +I +K+L+     + K +++S+  + + ++    +A  +S+ +L+L+  L+ ++  
Sbjct: 1564 FKLNNIVEKYLNVI---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEEIKK 1620

Query: 563  EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL-SLEENIYDLSGEKF 621
            E L H+   ++   I  +  ME+ GI++D + L++ + EI   L    +     L  E  
Sbjct: 1621 ENL-HIVNDIENKCILPICDMELNGIKVDLENLQKSTNEILNELNIEKDNLKKKLKDENI 1679

Query: 622  NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
            N++S +Q+   L       +  +  + +      D    N  ++  I ++  +R+L K+ 
Sbjct: 1680 NVNSQQQVLKALQ-----KNNVRDISNKLIENTSDSNLKNFLNHEEIISLRNYRRLYKLY 1734

Query: 682  STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            S +   LP HIN +T ++HT ++   T +GR +S +PNLQ IP +    + IR  FI   
Sbjct: 1735 SAFYLKLPLHINTKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREIFIPND 1790

Query: 742  TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
                I AD+ QIEL+I A I     + + + N++D+H + A+ I   NI  ++ + R  A
Sbjct: 1791 NNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDRHIA 1850

Query: 802  KTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
            K INF +IYG++   L         L +   +   +   +F  + GI+++  + K   R 
Sbjct: 1851 KAINFGLIYGMNYVNLKNYANTYYGLNMSLDQCLYFYNSFFEHYKGIYKWHNQVKQK-RA 1909

Query: 856  NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
              Y  T+  R++ +             +   A+N P+QG+ ADI + A++ ++ +L+D  
Sbjct: 1910 LQY-STLSNRKVIFPY----------FSFTKALNYPVQGTCADILKLALVDLYDNLKD-- 1956

Query: 916  LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +  K++L +HDE++ EV ++    A +I+V SME +    +  +V  +V++K++ NW 
Sbjct: 1957 INGKIILCVHDEIIIEVNKKFQEEALKILVQSMENSASYFLK-KVKCEVSVKIAENWG 2013


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 138/636 (21%), Positives = 265/636 (41%), Gaps = 53/636 (8%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
            L LE  +++S     +  +  I    D+  +   ++     +    T  +D    +   
Sbjct: 58  DLPLESGREISFSTDLSVEFRIISQPSDLTPYFHTVKEAPLLAIDTETTGLDPHSDRLRL 117

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           I IS               F+                  +  + LK+        KI HN
Sbjct: 118 IQIS--APGIPVLVIDCAAFLP-----------------DGFACLKELLNTPS-EKIFHN 157

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDS--GRSSHDIASIAQKWLSYTRKEILKSRKS 526
            ++D   L   GI      D ML + +L    G     +A +A  +L     +  ++   
Sbjct: 158 ARFDLQFLMGIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADHYLGIKLDKTEQTG-- 215

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           S     ++ SQ+  +A  ++ ++L+L+ ++ P L    L      ++   +  +++ E  
Sbjct: 216 SWDSASLTGSQLA-YAALDAWILLKLYDVMNPLLARHGLGRTA-SIEFACVSAIARTEYD 273

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK---FNLSSPKQLGDILFTKLKFPSGA 643
           GI +D +   ++  +  K   +  E +Y  SG       L   ++  D+ F    +    
Sbjct: 274 GINLDLEKWDELRRKTEKQYDAALETLYTYSGTPSCQLTLWGGEEALDVNFESNPYVLKL 333

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
             + G   T+            P+++ + E+R+ SK  S++   +P  I+  T R+H  Y
Sbjct: 334 LNRYGIPVTSTSRRSLAPYHSQPLVQALTEYRRHSKSLSSFLHPIPAQIHPVTHRLHPKY 393

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
                 +GR++   PN+Q IP + D        F +P  +KLI ADYSQIELR+ A I+ 
Sbjct: 394 MQIGAWSGRMSCYNPNIQQIPREADFR----SCFTAPDGRKLILADYSQIELRVAAQISG 449

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR- 822
            + +    +   D+H + A+ I  + + +V+   R+ AK +NF +I+G+    L      
Sbjct: 450 DSRMKSACQKGEDLHALTASLISSIPVSQVTKAQRQAAKAVNFGLIFGMGAEGLKQYAGQ 509

Query: 823 -----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
                +   EA  +   +F  + GI+ +    +      G   T+ GR+  +    SP +
Sbjct: 510 SYGVEMTLEEAEQFRSAFFQSYRGINWWHHDLRESHPLEG--RTLTGRKFLF----SPNT 563

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            + ++      N P+QG+AADI + A+  +   +       K++  +HDE++ EVP EE 
Sbjct: 564 GLADLA-----NTPVQGTAADILKHALGLLASRIR--GSDKKIVAIVHDEILMEVPVEEA 616

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                ++  +ME+A    +   VP + + K +++W 
Sbjct: 617 DDTVVLLKTAMEEAAQAILP-DVPCEADAKAADSWA 651


>gi|330684529|gb|EGG96240.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Staphylococcus epidermidis VCU121]
          Length = 387

 Score =  323 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 163/312 (52%), Gaps = 11/312 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S  +RAFYA PLLS K  G+  NA+ GF  +L K+L+  +      HF V 
Sbjct: 2   NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKILKEEQPN----HFLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  Y +YK  R K P  L  Q P +R    A+ I   E++ +EADDII T 
Sbjct: 57  FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELENYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179
           +  A+K GF   II+ D+DL QL +    +Y T K     +    E + +K+ G+ P ++
Sbjct: 117 SREADKAGFETIIITGDRDLTQLATDHVTIYYTKKGVTDVDHYTPEFIAEKYNGLTPNQI 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++ L GD+ DNIPG+ G+G KTA  LL ++  +E +  N   +  KK +E +    + 
Sbjct: 177 IDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFNTVEGVYDNIESVSGKKLKEKLENSKDD 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILED-CNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           A +S+ L  +  + PI + LE   +++  +    I   K LEF +L+  + +        
Sbjct: 237 ALMSKDLATINVESPIEVKLEDTKMDEHLDETEKIELFKKLEFNQLLAEIDSVEATQEQK 296

Query: 299 IEPVVLDINTTE 310
            +   ++ N   
Sbjct: 297 DKTFEVESNFDH 308


>gi|224143022|ref|XP_002324822.1| predicted protein [Populus trichocarpa]
 gi|222866256|gb|EEF03387.1| predicted protein [Populus trichocarpa]
          Length = 646

 Score =  323 bits (828), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 146/536 (27%), Positives = 247/536 (46%), Gaps = 50/536 (9%)

Query: 481 ISMRGFEDIMLMSYVLDSGR---SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
           I++    D+ +++++L       S+ ++    +K LS   + +  + ++    +++    
Sbjct: 99  INIEEAIDMCIVAWILWPDEERSSNPNLEKEVKKRLS--SEAVAAANQNGRWKNQM-RRV 155

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                         L   L   L  E L    + ++ P+++V++ ME+ GI +D +    
Sbjct: 156 AHNGCCRRVAQTRALCSGLWKLLTSEGLFEALKNIEIPLVNVLADMELWGIGVDMEGCLN 215

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT-TAQD 656
               + K L  LE+  Y L+G  F+L +   + +IL+  LK P       G+    T + 
Sbjct: 216 ARTVLGKRLRYLEKKAYKLAGMTFSLYTAADIANILYRHLKLPIPEGHNKGKKHPSTDKH 275

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH----INKRTQRVHTFYSLASTMTGR 712
              +   ++PI+  I E R L+K+ ++   S+ +     +  +   +H  +   ST TGR
Sbjct: 276 CLDLLRHEHPIVPVIREHRTLAKLLNSTLGSICSLARLSMETQKYTLHGHWLQTSTATGR 335

Query: 713 LASLEPNLQNI---------------PIKTDLGQKIRRAFISP--PTKKLISADYSQIEL 755
           L+  EPNLQ +                 + +  +   R F  P      L++ADYSQIEL
Sbjct: 336 LSIEEPNLQCVEHAVDFEMSSDKEGDDAEPEHYKINARDFFVPTQDNWLLLTADYSQIEL 395

Query: 756 RILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           R++AH +K T L ++      D+  ++AA   G     VS   R   K + + I+YG+  
Sbjct: 396 RLMAHFSKDTALIKLLTKPHGDVFNLIAARWTGKPEASVSSVERDQTKRMVYGILYGMGA 455

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
             LA QL     EAA+ IK +   FPG+  ++ +     R+ GYVETI GR+    +I  
Sbjct: 456 NTLAEQLDCSSDEAAEKIKSFKSSFPGVASWLHEAVASCREKGYVETIKGRKRFLSKIKF 515

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-----------------KLA 917
             S  ++  +R A+N+  QGSAAD+ + AMI++H  + D                  K  
Sbjct: 516 GNSEEKSKAQRQAVNSICQGSAADLIKIAMINIHSLIVDGVGRPESSSLHANKFHMLKGQ 575

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            ++LLQ+HDELV EV    I  A+ ++  SME A     +L VPL V +KV   W 
Sbjct: 576 CRILLQVHDELVLEVDPSLINEAAVLLQMSMEDAA----SLLVPLHVKLKVGRTWG 627


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 164/772 (21%), Positives = 300/772 (38%), Gaps = 150/772 (19%)

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG---SASFKIITDTMDA 401
            T + +    L  LS+   ++     + + +   + VQ++  +G     +       +D 
Sbjct: 88  TTSEDIESHLLHGLSEADADHWPVNLVQDKQTADRLVQQIYALGPDHVHACDTEVADIDV 147

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
               P+     +L  +D   +    +      +   D+       +  L Y + F E+  
Sbjct: 148 KSVGPVGNGKVSLQFEDIALYDGPDVNYGNGPYIWVDNLDN---AEGTLEYFRAFLEDSS 204

Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG---RSSHDIASIAQKWLSY-- 515
             K+ HN  +D+ VL  +GI+++G   D M M+ + ++    R  + + ++    L    
Sbjct: 205 LKKVWHNYSFDRHVLFNHGINVQGLHGDTMHMARLWNTARFKRGGYSLQALTSDLLHQRK 264

Query: 516 -TRKEILKSRK--------SSIPIDKISDSQVQE--------HAIENSNVILQLWLLLRP 558
              KE+  + K            I  ++D Q           +++ ++     L  +L+ 
Sbjct: 265 KNMKELFGTPKPRKDGSPGKEKTIPNVADLQRCADFRSRWIRYSVFDAESTWFLHRVLQH 324

Query: 559 KLI----------------VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           KL                    +   Y +   P  + ++ +E  G+ +D+  L++V    
Sbjct: 325 KLELTHWIEDADVLTGQQVDRSMYEFYLKYLVPFGECLTDIERKGMNVDRAYLRRVEKTA 384

Query: 603 SKNLLSLEENIYDLSGE------KFNLSSPKQLGDILF---------------------- 634
             +   LE+++   +        + N+ S  Q   +LF                      
Sbjct: 385 LNDRKRLEQHVLTWAKRYCEEADRMNVYSAAQKQQLLFAPYSDAQGKAILPAERSFEVEN 444

Query: 635 --------------------TKLKFPSGAKTKTGQWKTTAQDLEQIN------------C 662
                                       + T +G    TA  LE++              
Sbjct: 445 TEQHIEPGKQRPKKKRNITIRGFGLTPISFTASGLPSVTASVLEELAGNPEANPPKYGKA 504

Query: 663 GDN-----------PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            D+             ++ + E   ++ + + +   L    +    RVH   +L +T TG
Sbjct: 505 YDHFADKEEGAAACHALRALYEISSINTMLNNFILPLQELADSAG-RVHCSLNL-NTDTG 562

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           RL+S +PNLQN P       KIR AF++P  KKLI ADYSQ+ELR+LAHI +   + + F
Sbjct: 563 RLSSRKPNLQNQPALEKDRYKIRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAF 622

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSP-------------------------QMRRHAKTINF 806
               D H   A  ++    + V                             R++AK +NF
Sbjct: 623 RAGGDFHSRTAVAMYDNVAKAVESGEVLLEWDYTKGTSPPVPLLKEKFATERKNAKILNF 682

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
           SI YG +PF L+    + R EA+  + +++     + ++ E+  +  R+ GY  T+ GR 
Sbjct: 683 SIAYGKTPFGLSKDFGVRRVEASKILDKWYGGRQEVRKWQEQAIDTARKFGYTRTLMGRY 742

Query: 867 IHYD--EINSPKSSIR---NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
                  + S     R   +  ERAA+N PIQG+AAD+  +AM+ ++K+     +  +M+
Sbjct: 743 RRLPDAMLKSNSFISRKAQSHAERAAVNTPIQGAAADLVMQAMLRINKNSRLRSMGWEMV 802

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            QIHDE++ E PE+    A  I+   ME        L V L+V+ K+  +W 
Sbjct: 803 CQIHDEIILEGPEDNAEEAKAIVKDLMENPFEH--PLSVDLQVDAKIDRSWY 852


>gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster]
 gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster]
          Length = 2059

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 144/593 (24%), Positives = 264/593 (44%), Gaps = 54/593 (9%)

Query: 408  AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
             ++    D                ++   + +  +   T   +  L      +    + H
Sbjct: 1489 GVSFCLADNVAYYW----------NMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMH 1538

Query: 468  NIKYDKLVLHRYGISMRGF----EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEIL 521
            + K    +L +    ++      ED  + +++L   ++  +  ++ Q +         + 
Sbjct: 1539 DGKEQLKMLRKAIPQLKRISAKLEDAKVANWLLQPDKTV-NFLNMCQTFAPECTGLANLC 1597

Query: 522  KSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPM 576
             S +  SS  +D  S    +      S V L +       L       LL  +  ++ P+
Sbjct: 1598 GSGRGYSSYGLDTSSAILPRIRTAIESCVTLHILQGQTENLSRIGNGDLLKFFHDIEMPI 1657

Query: 577  IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
               + QME+ G    +  L+Q+   +   +  +E  IY+  G +FNL S + +  +L   
Sbjct: 1658 QLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLGSSQAVAKVLGLH 1717

Query: 637  LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
             K         G+  T+ Q LE++N    PI   IL +R+LS + +     L        
Sbjct: 1718 RKA-------KGRVTTSRQVLEKLNS---PISHLILGYRKLSGLLAKSIQPLMECCQAD- 1766

Query: 697  QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-------GQKIRRAFIS-PPTKKLISA 748
                   S+  T TGR++  EPNLQN+  +  +           R  F+    ++ L+SA
Sbjct: 1767 --RIHGQSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHISCRSPFMPTDESRCLLSA 1824

Query: 749  DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            D+ Q+E+RILAH+++   L +V ++S D+   +AA    +   +V+  +R   K + + I
Sbjct: 1825 DFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQDLRNSTKQVCYGI 1884

Query: 809  IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            +YG+    LA  L     EA     ++   + GI +Y  +  NF R  G+VETI GRR +
Sbjct: 1885 VYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSKGFVETITGRRRY 1944

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-------TKML 921
             + INS    ++N  ER A+N+ IQGSAADI + A++ + K++E ++           ++
Sbjct: 1945 LENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIERYREKLALGDNSVDLV 2004

Query: 922  LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + +HDEL+FEVP  +    ++++  +ME      + L VPLKV +++  +W E
Sbjct: 2005 MHLHDELIFEVPTGKAKKIAKVLSLTMENC----VKLSVPLKVKLRIGRSWGE 2053


>gi|118579386|ref|YP_900636.1| ribonuclease H [Pelobacter propionicus DSM 2379]
 gi|118502096|gb|ABK98578.1| ribonuclease H [Pelobacter propionicus DSM 2379]
          Length = 482

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 147/426 (34%), Positives = 222/426 (52%), Gaps = 16/426 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L+L+DGSS+IYRA+Y     +    G+P NA+ GF  ML  LLQ +R +    +
Sbjct: 1   MNAAPRLYLLDGSSYIYRAYYGVRDCATSV-GMPTNAVFGFTRMLLSLLQENRPD----Y 55

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV+FD P   TFR +IYP YKA+R  +P  L  QLP +R   QA  IPA+E  GFEADD
Sbjct: 56  LAVVFDPPREGTFRRQIYPPYKAHRDDMPTDLAAQLPYIRQVVQALNIPALEAPGFEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT    +  EG  VT+++ DKDL+Q+V     L DT+K  +     V+ ++G+PPE +
Sbjct: 116 VIATLARRSADEGARVTVVTGDKDLLQIVGERIGLLDTMKGLRSGPREVLDRFGVPPELV 175

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             +  L GDS DNIPG+PGIG KTAA L++ +G+LE +L   S +  ++RREN+  Y + 
Sbjct: 176 PDVLGLAGDSSDNIPGVPGIGEKTAAELVRRFGSLEGVLRWKSLVNGRQRRENLSAYGDQ 235

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           ARLS+ L  +R DVP+ + L  L  +  N P LI  L+ LEF  L       +    A +
Sbjct: 236 ARLSKTLATVRYDVPLELSLADLCRQPPNLPLLIPLLRELEFGAL----EVAFTPPPAGV 291

Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
             +  D +  ++        +    + K  + S      +    E T     LE L K  
Sbjct: 292 VEIYCDGSGRDSGPGGYGVILRYGESEK--ELSGFEPVATSQRMELTAAIRGLEALHKPR 349

Query: 360 QYPINNDSYTKIVNTKDI-QQWVQ--KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           Q  + +DS   +    +  ++W++  +LET  +   + +   +    +K   ++   +  
Sbjct: 350 QVRVFSDSQYLVRGMAEWLERWIRSGRLETPDALKNQDLWQRLAGLSAKH-QVSWEWVRG 408

Query: 417 KDDTSF 422
            D   F
Sbjct: 409 HDGHPF 414


>gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase
          Length = 924

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 153/655 (23%), Positives = 278/655 (42%), Gaps = 90/655 (13%)

Query: 397 DTMDAF----HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            T++A+      K + I +S                I L     +++  K      I+ +
Sbjct: 230 TTLEAYPMSQQPKIVGIGLSDRSGYGCA--------IPLYH---RENLMKGNQIGTIVKF 278

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMR-GFEDIMLMSYVLDSGRSSHD----IA 506
           L+K  E E    I HN K+D   L     I +     D ML+ +++D     +     +A
Sbjct: 279 LRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIWDTMLI-HIIDYRGERYSWSKRLA 337

Query: 507 SIAQKWLSYTRKEILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-E 563
            +      Y      +    +     D I    ++ +  ++ +V  +L     P +   E
Sbjct: 338 WLETDMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLADDCDVTFRLSEKYIPLVEENE 397

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------- 616
           +   ++E +  P    +  +E+ GI +D++ L+ +     K +  LE+ + +        
Sbjct: 398 EKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSYEKEISRLEDKMREFPEGVAME 457

Query: 617 ---------------------------------------SGEKFNLSSPKQLGDILFTKL 637
                                                   G+K N  S KQLG++LF ++
Sbjct: 458 REMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSKGGDKINFGSTKQLGELLFERM 517

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
              +   T  G    T  D  +     +  +K ++E+R+ + + + +   L   I+    
Sbjct: 518 GLETVIFTDKGAPS-TNDDSLKFMGSQSDFVKVLMEFRKANHLYNNFVSKLSLMIDPDNI 576

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIK------TDLGQKIRRAFISP--PTKKLISAD 749
            VH  Y++  T+TGRL+S EPN Q  P K           +I++ F S       ++  D
Sbjct: 577 -VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPTLFQYNFEIKKMFNSRFGDGGVIVQFD 635

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQ+ELRIL           ++ +  D+H+ VA++ FGV IE+VS   R  +K I F I+
Sbjct: 636 YSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIV 695

Query: 810 YGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           Y  S   L+  LR     +   E   +IK+YF RFP + ++I  TK  V+    V+T+ G
Sbjct: 696 YQESARGLSEDLRAEGITMSEDECEIFIKKYFKRFPKVSKWIRDTKKHVKDISTVKTLTG 755

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
              +  +I+S   S  N  ER A+N PIQG+ +D T  ++I +++ L +  L +++ + +
Sbjct: 756 ATRNLPDIDSIDQSKANEAERQAVNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITV 815

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKAC----LPKINLRVPLKVNIKVSNNWQEE 975
           HD +V + P++E+   ++ + H ME         K    VP+   +++  N+ + 
Sbjct: 816 HDSIVLDCPKDEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNYGDA 870


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 140/545 (25%), Positives = 245/545 (44%), Gaps = 52/545 (9%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           +LK+    +    +GHN+K+D   L+RY I      D M+ S +L +    H + S+A  
Sbjct: 62  FLKELLSQKGV--VGHNLKFDLKYLYRYHIEPYAVFDTMVASQLL-AELDRHSLQSVAMH 118

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL----------- 560
           +L      + KS + S    ++      E+A  +  V+  L+ +L  KL           
Sbjct: 119 YLGQV---LDKSLQLSDWGSRVLTKAQLEYAALDVVVVRDLFPILLEKLNQCPVREEILL 175

Query: 561 -----IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
                 V  L +    ++   +  V+++E+ G+ +D   L+ V  E S+ +  +  +   
Sbjct: 176 KTRTSRVFGLQNPVAIVEMAFVQEVAKLELNGLPVDTQELESVFREYSRKVQRMIMDF-- 233

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           +S  + +  SPKQLG+ L  +L        K           E      +P++++ILE R
Sbjct: 234 ISTHRVDPMSPKQLGEFLTRRLGLDLPKTEKGNVSTDDKALSEH---AHHPVVRHILEIR 290

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
              KI     +   N    R  RV+  +     +TGR+AS  PN+QNIP        +RR
Sbjct: 291 ASKKILDKLEEIRENL---RGNRVYPEFKQIGAVTGRMASSNPNVQNIPKD------LRR 341

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F +      + AD+SQIELRI A       + + F+   D+HR  A+ + G   E ++ 
Sbjct: 342 IFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIRAFQEGRDLHRYTASILLGKREEDITK 401

Query: 796 QMRRHAKTINFSIIYGISPFRLAT-----QLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           + R+ AK +NF +IYGIS   L+       + +P  EA    +R+F  F G  ++  + K
Sbjct: 402 EERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFFSYFEGFRDWHNRVK 461

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
             +++ G           Y     P +          +N PIQG+ AD+ + A++ +   
Sbjct: 462 EELKKTGKSSGHTLLGRSYVAHTFPDA----------VNYPIQGTGADLLKLAVLMLDAE 511

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L    +  K++  +HDE+V E P+E       ++  +M++A    +  RVP++V + V  
Sbjct: 512 LRKEGIPAKVVNLVHDEIVLECPQEVAQEVQTLLERAMKRAGSIILK-RVPVEVEVTVKE 570

Query: 971 NWQEE 975
            W++E
Sbjct: 571 RWEKE 575


>gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster]
          Length = 2059

 Score =  321 bits (823), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 143/593 (24%), Positives = 263/593 (44%), Gaps = 54/593 (9%)

Query: 408  AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
             ++    D                ++   + +  +   T   +  L      +    + H
Sbjct: 1489 GVSFCLADNVAYYW----------NMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMH 1538

Query: 468  NIKYDKLVLHRYGISMRGF----EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEIL 521
            + K    +L +    ++      ED  + +++L   ++  +  ++ Q +         + 
Sbjct: 1539 DGKEQLKMLRKAIPQLKRISAKLEDAKVANWLLQPDKTV-NFLNMCQTFAPECTGLANLC 1597

Query: 522  KSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPM 576
             S +  SS  +D  S    +      S V L +       L       LL  +  ++ P+
Sbjct: 1598 GSGRGYSSYGLDTSSAILPRIRTAIESCVTLHILQGQTENLSRIGNGDLLKFFHDIEMPI 1657

Query: 577  IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
               + QME+ G    +  L+Q+   +   +  +E  IY+  G +FNL S + +  +L   
Sbjct: 1658 QLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLGSSQAVAKVLGLH 1717

Query: 637  LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
             K         G+  T+ Q LE++N    PI   IL +R+LS + +     L        
Sbjct: 1718 RKA-------KGRVTTSRQVLEKLNS---PISHLILGYRKLSGLLAKSIQPLMECCQAD- 1766

Query: 697  QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-------GQKIRRAFIS-PPTKKLISA 748
                   S+  T TGR++  EPNLQN+  +  +           R  F+    ++ L+SA
Sbjct: 1767 --RIHGQSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHISCRSPFMPTDESRCLLSA 1824

Query: 749  DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            D+ Q+E+RILAH+++   L +V ++S D+   +AA    +   +V+  +R   K + + I
Sbjct: 1825 DFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQDLRNSTKQVCYGI 1884

Query: 809  IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            +YG+    LA  L     EA     ++   + GI +Y  +  NF    G+VETI GRR +
Sbjct: 1885 VYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFAHSKGFVETITGRRRY 1944

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-------TKML 921
             + INS    ++N  ER A+N+ IQGSAADI + A++ + K++E ++           ++
Sbjct: 1945 LENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIERYREKLALGDNSVDLV 2004

Query: 922  LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + +HDEL+FEVP  +    ++++  +ME      + L VPLKV +++  +W E
Sbjct: 2005 MHLHDELIFEVPTGKAKKIAKVLSLTMENC----VKLSVPLKVKLRIGRSWGE 2053


>gi|225850014|ref|YP_002730248.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644888|gb|ACO03074.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 296

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 114/283 (40%), Positives = 164/283 (57%), Gaps = 6/283 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVDGSS++YRAFYA P L+    G P  AI GF  M+  L++    E    + AV
Sbjct: 2   DKKLVLVDGSSYLYRAFYALPPLT-SPKGEPTGAIYGFIRMISTLIKELNPE----YMAV 56

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD P  TFR+E Y +YKA R + P+ L  Q+P ++   + +GI  +EI G+EADDIIAT
Sbjct: 57  VFDLPGKTFRHEKYKEYKATRKETPDELKVQIPKIKEIIKLWGIKILEIPGYEADDIIAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               A  +GF V I++ DKD+MQL+     + + V  E  + E V +K+GI PE+ V   
Sbjct: 117 IAKKAVDKGFEVIIVTPDKDMMQLIDEKVFILNPVTGEIFNREKVKEKYGIYPEQFVDYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           ++ GD++DNI G+ G+G KTA  LL +YGNL+NIL +  ++K  K +E   E  E  + +
Sbjct: 177 SMIGDTVDNIIGVRGVGPKTAEKLLNQYGNLKNILEHKDQLKP-KLKEAFEEAEERLKEN 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             LV L  ++ I I  E L  E  +  +L    K L F  L+ 
Sbjct: 236 IFLVSLEKNIDIDIQPEDLKKEKADLLKLRDIFKELGFKSLLK 278


>gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 297

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 119/300 (39%), Positives = 188/300 (62%), Gaps = 6/300 (2%)

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           ++K++     +L + IN R  R+HT ++     TGRL+S++PNLQNIP +   G+ IR A
Sbjct: 1   MNKLR-QIVQTLMDAINPRDGRIHTTFTQTVAATGRLSSVDPNLQNIPNRNATGRDIRSA 59

Query: 737 FISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           F+       L+SADYSQ+ELRI+A ++    L + F++  D HR VA+ ++G+ +++V+P
Sbjct: 60  FVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTP 119

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R H K +++ + YG+S + L+ QL IP  EAA    RYF  F  +H+Y+E   +  R 
Sbjct: 120 DQRNHVKAMSYGLAYGLSTYGLSQQLGIPSKEAAALRSRYFQTFGKVHDYLESLVSNARN 179

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            GY +T+FGRR ++  + S     R+  ER A+NAPIQG+AADI + AMI V ++L D  
Sbjct: 180 TGYTQTMFGRRRYFPALTSANRVARDAAERGALNAPIQGTAADIMKIAMIRVDRALRDGN 239

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L ++++LQIHDELV E+   E    ++++  +ME A    +N+ VPL V+  V ++WQ+ 
Sbjct: 240 LNSRIVLQIHDELVVELAPGEEKRVTELVRDAMEHA----VNIAVPLDVSTGVGSDWQQA 295


>gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus]
          Length = 467

 Score =  320 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 126/462 (27%), Positives = 222/462 (48%), Gaps = 35/462 (7%)

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++   N  ++  L + L  KL    L  ++  L+ P+I +++ ME   I +D++ +++ S
Sbjct: 1   QNVCMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTS 60

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKTKTGQWKTT 653
           A +   L  LE+  + ++GE+F + S  QL +ILF KLK           +T      +T
Sbjct: 61  ALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLST 120

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIK-STYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           ++ + Q      P   +       S +    Y   L   I        + ++   T+TGR
Sbjct: 121 SEAMTQWRTSGVPAGPHCCATTADSCLLSWLYPIGLLGSI-------SSTWNQTGTVTGR 173

Query: 713 LASLEPNLQ-------------NIPIKTDLGQKIRR--AFISPPTKKLISADYSQIELRI 757
           L++  PN+Q             N   K +    I     F+S      ++AD+SQIELRI
Sbjct: 174 LSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEGHTFLAADFSQIELRI 233

Query: 758 LAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           LAH++    L ++F+ S   D+   + ++   + IE+V+   R   K + +S++YG    
Sbjct: 234 LAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKE 293

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
           RLA  L +   EA  +++R+  ++  I ++ +         GYV +I GRR     I + 
Sbjct: 294 RLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVTSILGRRRPLPRICAQ 353

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPE 934
              +R   ER A+N  +QGSAAD+ + AMI +  ++     L  +++ QIHDEL+FEV +
Sbjct: 354 DQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVED 413

Query: 935 EEITTASQIIVHSMEK---ACLPKINLRVPLKVNIKVSNNWQ 973
            ++   + ++   ME        ++ L+VPLKVN+ V  +W 
Sbjct: 414 TQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSWG 455


>gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1]
          Length = 924

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 153/655 (23%), Positives = 277/655 (42%), Gaps = 90/655 (13%)

Query: 397 DTMDAF----HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            T++A+      K + I +S                I L     +++  K      I+ +
Sbjct: 230 TTLEAYPMSQQPKIVGIGLSDRSGYGCA--------IPLYH---RENLMKGNQIGTIVKF 278

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMR-GFEDIMLMSYVLDSGRSSHD----IA 506
           L+K  E E    I HN K+D   L     I +     D ML+ +++D     +     +A
Sbjct: 279 LRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIWDTMLI-HIIDYRGERYSWSKRLA 337

Query: 507 SIAQKWLSYTRKEILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-E 563
            +      Y      +    +     D I    ++ +  ++ +V  +L     P +   E
Sbjct: 338 WLETDMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLADDCDVTFRLSEKYIPLVEENE 397

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------- 616
           +   ++E +  P    +  +E+ GI +D++ L+ +     K +  LE+ + +        
Sbjct: 398 EKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSYEKEISRLEDKMREFPEGVAME 457

Query: 617 ---------------------------------------SGEKFNLSSPKQLGDILFTKL 637
                                                   G+K N  S KQLG++LF ++
Sbjct: 458 REMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSKGGDKINFGSTKQLGELLFERM 517

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
              +   T  G    T  D  +     +  +K ++E+R  + + + +   L   I+    
Sbjct: 518 GLETVIFTDKGAPS-TNDDSLKFMGSQSDFVKVLMEFRNGNHLYNNFVSKLSLMIDPDNI 576

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIK------TDLGQKIRRAFISP--PTKKLISAD 749
            VH  Y++  T+TGRL+S EPN Q  P K           +I++ F S       ++  D
Sbjct: 577 -VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPTLFQYNFEIKKMFNSRFGDGGVIVQFD 635

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQ+ELRIL           ++ +  D+H+ VA++ FGV IE+VS   R  +K I F I+
Sbjct: 636 YSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIV 695

Query: 810 YGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           Y  S   L+  LR     +   E   +IK+YF RFP + ++I  TK  V+    V+T+ G
Sbjct: 696 YQESARGLSEDLRAEGITMSEDECEIFIKKYFKRFPKVSKWIRDTKKHVKDISTVKTLTG 755

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
              +  +I+S   S  N  ER A+N PIQG+ +D T  ++I +++ L +  L +++ + +
Sbjct: 756 ATRNLPDIDSIDQSKANEAERQAVNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITV 815

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKAC----LPKINLRVPLKVNIKVSNNWQEE 975
           HD +V + P++E+   ++ + H ME         K    VP+   +++  N+ + 
Sbjct: 816 HDSIVLDCPKDEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNYGDA 870


>gi|222616936|gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group]
          Length = 2044

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 146/642 (22%), Positives = 254/642 (39%), Gaps = 94/642 (14%)

Query: 377  IQQWVQKLETIGSASFKI------ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
               ++ +  T+   SF +      I  +   F    + +A+      +++         D
Sbjct: 1395 FDSFLDQWSTVSEFSFDLHYVKKSIKSSSTYF--DILGLAVCW----ENSPVYYCNFPKD 1448

Query: 431  LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------------- 477
            L +  S DS           + + +        K+  N+K+    L              
Sbjct: 1449 LMMAGSNDSIEMWDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPCVSCQRLSRLH 1508

Query: 478  -------------RYGISMRGFE-----DIMLMSYVLDSGRSSH---DIASIAQKWLSYT 516
                            + ++        DI L+++VL     S    ++  + ++ L   
Sbjct: 1509 LDYKMLKNVEVLDNLYVFLQPVSVHSGLDICLVAWVLWPDEESKTVPNLEKLVKRRLHN- 1567

Query: 517  RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
              E   +                      +     L  +LR  L+ + L  + E ++ P+
Sbjct: 1568 --EAAAAANRDGRWRNQMHKAAHNGCCRRAAQTRALCSVLRKLLVSQNLNDLLETIEGPL 1625

Query: 577  IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
            ++V++ ME+ GI  D D   +    I + L  LE+  Y L+G+ F+L++   + D+L+T 
Sbjct: 1626 VNVLADMELWGIGADMDACLRARHIIIRKLKELEKEAYKLAGKSFSLNATADIADVLYTH 1685

Query: 637  LKFPSGAKTKTGQWKT-TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL----PNH 691
            LK P       G+    T +         +PII  I E R L+K+ +    S+       
Sbjct: 1686 LKLPVPKGCGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKLLNGTLGSICSRAQLC 1745

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
               +   +   +   ST TGRL+  EPNLQ                       L++ADYS
Sbjct: 1746 SKSQRYIIQGNWLQTSTATGRLSMEEPNLQ-------------------ENWLLVTADYS 1786

Query: 752  QIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            QIELR++AH +K T L ++      D+  M+A+   G     +  + R   K   + I+Y
Sbjct: 1787 QIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICSKERETTKRFIYGILY 1846

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            G+    LA QL     +AA  I+ +   FPG+  ++ +     R  GYVET+ GRR    
Sbjct: 1847 GMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLMGRRRFLS 1906

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE------------------ 912
            +I +  S  +   +R A+N+  QGSAADI + AMI VH ++                   
Sbjct: 1907 KITAGNSKEKAKAQRQAVNSICQGSAADIIKVAMIKVHSAITNGSTVGATVDSIDVAMQN 1966

Query: 913  --DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
              + +    ++LQ+HDELV EV    +  A +++   ME + 
Sbjct: 1967 FSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLLQTVMENSA 2008


>gi|108862506|gb|ABA97168.2| DNA polymerase I family protein, expressed [Oryza sativa Japonica
            Group]
          Length = 2065

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 146/642 (22%), Positives = 254/642 (39%), Gaps = 94/642 (14%)

Query: 377  IQQWVQKLETIGSASFKI------ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
               ++ +  T+   SF +      I  +   F    + +A+      +++         D
Sbjct: 1416 FDSFLDQWSTVSEFSFDLHYVKKSIKSSSTYF--DILGLAVCW----ENSPVYYCNFPKD 1469

Query: 431  LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------------- 477
            L +  S DS           + + +        K+  N+K+    L              
Sbjct: 1470 LMMAGSNDSIEMWDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPCVSCQRLSRLH 1529

Query: 478  -------------RYGISMRGFE-----DIMLMSYVLDSGRSSH---DIASIAQKWLSYT 516
                            + ++        DI L+++VL     S    ++  + ++ L   
Sbjct: 1530 LDYKMLKNVEVLDNLYVFLQPVSVHSGLDICLVAWVLWPDEESKTVPNLEKLVKRRLHN- 1588

Query: 517  RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
              E   +                      +     L  +LR  L+ + L  + E ++ P+
Sbjct: 1589 --EAAAAANRDGRWRNQMHKAAHNGCCRRAAQTRALCSVLRKLLVSQNLNDLLETIEGPL 1646

Query: 577  IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
            ++V++ ME+ GI  D D   +    I + L  LE+  Y L+G+ F+L++   + D+L+T 
Sbjct: 1647 VNVLADMELWGIGADMDACLRARHIIIRKLKELEKEAYKLAGKSFSLNATADIADVLYTH 1706

Query: 637  LKFPSGAKTKTGQWKT-TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL----PNH 691
            LK P       G+    T +         +PII  I E R L+K+ +    S+       
Sbjct: 1707 LKLPVPKGCGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKLLNGTLGSICSRAQLC 1766

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
               +   +   +   ST TGRL+  EPNLQ                       L++ADYS
Sbjct: 1767 SKSQRYIIQGNWLQTSTATGRLSMEEPNLQ-------------------ENWLLVTADYS 1807

Query: 752  QIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            QIELR++AH +K T L ++      D+  M+A+   G     +  + R   K   + I+Y
Sbjct: 1808 QIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICSKERETTKRFIYGILY 1867

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            G+    LA QL     +AA  I+ +   FPG+  ++ +     R  GYVET+ GRR    
Sbjct: 1868 GMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLMGRRRFLS 1927

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE------------------ 912
            +I +  S  +   +R A+N+  QGSAADI + AMI VH ++                   
Sbjct: 1928 KITAGNSKEKAKAQRQAVNSICQGSAADIIKVAMIKVHSAITNGSTVGATVDSIDVAMQN 1987

Query: 913  --DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
              + +    ++LQ+HDELV EV    +  A +++   ME + 
Sbjct: 1988 FSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLLQTVMENSA 2029


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 156/672 (23%), Positives = 292/672 (43%), Gaps = 112/672 (16%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            N  Y  I + + +   +++LET       I T  +D   S+   I I+           
Sbjct: 43  PNADYKIIKDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLIQIA----------- 91

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GIS 482
                  + +   +  T K          L++F E+    K+GHN+ ++   L ++ GI+
Sbjct: 92  --APNRPVILIEFRSITHK--------ESLRRFIEHHKIPKVGHNLAFEIQFLTKHLGIN 141

Query: 483 M--RGFEDIMLMSYVLDSGR-------------------------------------SSH 503
                + D MLM+ +L +G                                       S+
Sbjct: 142 PVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGVLPIPNLNQSIKNKKKLKQELNRNLPGSY 201

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            +  +A + L Y+  + L+      P+ +    +  ++A  ++ V+L L    R K+I  
Sbjct: 202 SLMRVAARELGYSLDKSLQVSDWGKPLTQ----EQLQYAANDAAVVLPLRDTFRSKIIEN 257

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-------- 615
           +L    + ++   +  V+QM + G+ +D D   +++ EI        +   +        
Sbjct: 258 QLADAIQ-VELGALARVAQMGLMGMGLDLDRWGELAKEIETRREDAAKIACEVLKPDHAQ 316

Query: 616 --LSGEK--FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
             L G +   NL S +Q+   L  +L   +          +T++D       ++P +  I
Sbjct: 317 LNLFGGEASINLDSNEQVIAAL-ARLGIHTN---------STSKDTLDKLSENHPEVFTI 366

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           +E+R  SK  S++ + LP  +N  T R+H   +     +GR +   PNLQ IP +    +
Sbjct: 367 IEYRHWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAASGRFSFSNPNLQQIPRE----R 422

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           + R  F+     KLI ADYSQIELRI A IA  + +   + N  D+HR+ AA + G  ++
Sbjct: 423 QYRSCFVPASGYKLIIADYSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLD 482

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           +V+ Q R+  K +NF +IYG+   +L         +++   EA  +   +F  +PG+H++
Sbjct: 483 EVTKQERQLGKAVNFGLIYGMGATKLRIYAETNYGVKMSIEEAQRFRDNFFKGYPGLHQW 542

Query: 846 IEKTKNFVRQNGY--VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            + T   +R      + T+ GR   + +              + +N P+QG++ADIT+ A
Sbjct: 543 HQDTAFKLRTTKVKDIRTLSGRLRRWKD---------EPPLTSLLNTPVQGTSADITKLA 593

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           +  ++  L++  L    ++ +HDE+V EVPE  +   S ++  +M  A    +   VP+ 
Sbjct: 594 LHKLNTDLDE--LGGFPIVVVHDEIVLEVPEVHVAEGSTMLEEAMISAGKRFLK-SVPVV 650

Query: 964 VNIKVSNNWQEE 975
           V   +++ W E+
Sbjct: 651 VEATIADTWAEK 662


>gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase
 gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5]
          Length = 829

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 151/708 (21%), Positives = 290/708 (40%), Gaps = 87/708 (12%)

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF----LERLQKLSQYPI 363
               KGI   T    +     +  +S+S        E  P        +  +    +   
Sbjct: 47  FAGKKGIGDYTGKRVEYNGYANWIASISPAQLHFKPEMKPVFDATVENIHDIINGREKIA 106

Query: 364 NNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
               Y  I +  + +++++ +  +  G  +F   T  +       + ++IS  + +    
Sbjct: 107 KAGDYRPITDPDEAEEYIKMVYNMVIGPVAFDSETSALYCRDGYLLGVSISHQEYQGVY- 165

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYG 480
                                + LT+  + YL+K  ++E+   + HN+K+D        G
Sbjct: 166 ------------------IDSDCLTEVAVYYLQKILDSENHTIVFHNLKFDMHFYKYHLG 207

Query: 481 ISM------RGFEDIMLMSYVLDSGRSSHDIASIAQKW---------LSYTRKEILKS-- 523
           ++       R   D ML  YVLD  R +H + S+A K+         L   + +  K+  
Sbjct: 208 LTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHK 267

Query: 524 -RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVS 581
            +K     D I    +  +A ++++  ++L     PK+   EKL  +Y  +  P    + 
Sbjct: 268 IKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQ 327

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDI 632
           ++E  G+ I  D LK+   +++ NL    E +Y             E FN +S KQL  +
Sbjct: 328 RVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVL 387

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF  +      K       +T  +        +PI K +LE R+L+K+ STY + +   I
Sbjct: 388 LFDYVGLTPTGKLTDTGADSTDAEALNELATQHPIAKTLLEIRKLTKLISTYVEKILLSI 447

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +        F     T +GRL+S          + +    I+   ++PP  ++I+ D + 
Sbjct: 448 DADGCIRTGF-HEHMTTSGRLSSSGKLNLQQLPRDE--SIIKGCVVAPPGYRVIAWDLTT 504

Query: 753 IELRILAHIAKITPLYQVFENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRH 800
            E+   A ++    + QVF N         D H  +A  +F +  E     K+ P +R+ 
Sbjct: 505 AEVYYAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQA 564

Query: 801 AKTINFSIIYGISPFRLATQLR----------------IPRSEAADYIKRYFHRFPGIHE 844
           AK I F I+YG  P ++A  +                    ++A +YI+ YF +FP +  
Sbjct: 565 AKAITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKR 624

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +I+K  + ++ +G++ + FGR+     I+S    ++    R+  NA IQ +++D      
Sbjct: 625 WIDKCHDQIKNHGFIYSHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGA 684

Query: 905 ISVHKSLEDHKLATKM--LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +     +    L  +M  ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 685 VDADNEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEILIRNIQK 732


>gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans]
 gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans]
          Length = 967

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 146/560 (26%), Positives = 257/560 (45%), Gaps = 47/560 (8%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRGFEDIMLMSYVL 496
           +   T   +  L      +    + H+ K    +L +       IS++  ED  + +++L
Sbjct: 422 QGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKMLRKAIPQLQKISVK-LEDAKVANWLL 480

Query: 497 DSGRSSHDIASIAQKWLSYTR--KEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQL 552
              ++  +  ++ Q +         +  S +  SS  +D  S    +      S V L +
Sbjct: 481 QPDKTV-NFLNMCQTFAPECTGLANLCGSGRGYSSYGLDTSSAILPRIRTAIESCVTLHI 539

Query: 553 WLLLRPKLI---VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
                  L       LL  +  ++ P+   + QME+ G    +  L+Q+   +   +  L
Sbjct: 540 LKGQTENLGRIGEGNLLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKL 599

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
           E  IY+  G +FNL S + +  +L    K         G+  T+ Q LE++N    PI  
Sbjct: 600 ETKIYEQHGSRFNLGSSQAVAKVLGLHRKA-------RGRVTTSRQVLEKLNS---PISH 649

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK--- 726
            IL +R+LS + +     L               S+  T TGR++  EPNLQN+  +   
Sbjct: 650 LILGYRKLSCLLAKSIQPLMECCQAD---RIHGQSITYTATGRISMTEPNLQNVAKEFCI 706

Query: 727 ----TDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
                 +    R  F+     + L+SAD+ Q+E+RILAH+++   L +V  +  D+   +
Sbjct: 707 QVGSDAVNISCRSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAI 766

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
           AA    +   +V+P +R   K + + I+YG+    LA  L     EA     ++   + G
Sbjct: 767 AAHWNKIKESEVTPDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARIISDQFHEAYKG 826

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           I +Y  +  NF R  G+VETI GRR + +  NS    ++   ER A+N+ IQGSAADI +
Sbjct: 827 IRDYTRRVVNFARGKGFVETITGRRRYLEMTNSDMEHLKK-AERQAVNSTIQGSAADIAK 885

Query: 902 RAMISVHKSLEDHK----LATK---MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
            A++ + K++E ++    L  K   +++ +HDEL+FEVP  +    ++++  +ME     
Sbjct: 886 NAILKMEKNIERYREKLALGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESC--- 942

Query: 955 KINLRVPLKVNIKVSNNWQE 974
            + L VPLKV +++  +W E
Sbjct: 943 -VKLSVPLKVKLRIGRSWGE 961


>gi|194742333|ref|XP_001953657.1| GF17871 [Drosophila ananassae]
 gi|190626694|gb|EDV42218.1| GF17871 [Drosophila ananassae]
          Length = 2135

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 155/589 (26%), Positives = 273/589 (46%), Gaps = 43/589 (7%)

Query: 409  IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            I     D               +     Q+  G+   T   L  + K F       + H 
Sbjct: 1559 ILFQVDDSTYIDCLSFCVDSHYVVHFKMQEEKGRGVSTSLKLQEISKIFARTDLTLVMHK 1618

Query: 469  IKYDKLVLHRY-----GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI--- 520
             K    V+ +       I+++ FED  + S+++   R+     ++ Q++       +   
Sbjct: 1619 TKDQLKVILQAIPELKTIAVK-FEDPNVASWLMQPDRNC-SFQNMCQQYAPECLNLLNLC 1676

Query: 521  -LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
                  +S  +D  S+   Q  A   + V + +       L   + + V+   + P+  +
Sbjct: 1677 GSGLGYTSYGLDASSEVSAQVRAQVEACVSVHILNGQMKSLEEHQFIKVFRDNEMPLCLI 1736

Query: 580  VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
            ++QME+ G  + +  L  + ++I+ ++  LE  I++L+G +FN++S + +  +L    K 
Sbjct: 1737 LAQMEVIGFPVKEHRLGNLISQIAGSMKKLEAKIFELNGSRFNINSSQAVAKVLGIHRK- 1795

Query: 640  PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
                   TG+  T+ + LE++     PI   I ++R+L+ +       L           
Sbjct: 1796 ------PTGRVSTSREVLERLEA---PIANLICQYRKLNALLVKNVQPLMKCC---LNNR 1843

Query: 700  HTFYSLASTMTGRLASLEPNLQNIPIKT-----DLGQKIRR--AFIS-PPTKKLISADYS 751
               +S+ +T TGR++  EPNLQN+         D G  +    AF+    T+ L+SAD+ 
Sbjct: 1844 IHGHSITNTATGRISMAEPNLQNVAKNFVVDVQDRGAIVSCRSAFMPMDSTRCLLSADFC 1903

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            Q+E+RILAH+++   L     +  DI   ++A    +N  +VS Q+R   K I + IIYG
Sbjct: 1904 QLEMRILAHLSQDKALVAAMNSPRDIFTSISAHWHRMNESEVSDQLREGTKKICYGIIYG 1963

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            +S  +LA +L +   EA    +++   +PGI  Y  +   + R  GYVETI GRR + + 
Sbjct: 1964 MSMRKLADELNVTEQEAEVLSEQFHSNYPGIRSYTNRLIKYARHKGYVETITGRRRYLEN 2023

Query: 872  INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-------KLATKMLLQI 924
            I S  +  R   ER A+N+ IQGSAADI + A+I   K +  H       + +  ++L I
Sbjct: 2024 IRSEDAGTRKKAERQAVNSTIQGSAADIAKVAIIKSVKYMRRHCQKLFIDENSVNLVLHI 2083

Query: 925  HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            HDEL+FEVP ++    ++++   ME +      L VPLKV +K+ + W 
Sbjct: 2084 HDELMFEVPADKAKKIAKLLKVVMEASA----RLTVPLKVKLKMGSCWG 2128


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 149/596 (25%), Positives = 263/596 (44%), Gaps = 73/596 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           ++      F   TD++D    K   IA S                             + 
Sbjct: 1   MKNNEVFFFDTETDSLDFRTGKIKLIAFS-------------------------KGLNEV 35

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSH 503
             T  +   LK    +++ +K+ HN K+D       G  +  +   +LM+ VL  G    
Sbjct: 36  VTTTSVDERLKSILNDKNIIKVFHNAKFDVGFFQSKGYRVNNYHCTLLMAQVL--GEEKL 93

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV-QEHAIENSNVILQLWLLLRPKLIV 562
            + ++A+K+L     ++ KS + S    +   +Q   ++A+++      L+  L   L+ 
Sbjct: 94  SLKALAKKYLDV---DMDKSMQHSDNWQETEITQEHIDYAVKDVEHTRALYYKLLDLLVE 150

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KF 621
             LL VYER ++  +  +  +E  GI ++ D       +  +  + LE  I DL    + 
Sbjct: 151 NNLLTVYER-ERRALPAIVMLESNGINMEFDKWNARLDDDRRLAVELEIRIKDLLNRKEL 209

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NL+SPKQL + +               +  +T+ D       ++ +IK I ++R+L    
Sbjct: 210 NLNSPKQLVEAIVEYGI----------KLHSTSDDELAKYSDEHEVIKLIRKYRRLQAKI 259

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            TY + L   I+    R+   + L  + +GR++   P LQ +P         R  F++  
Sbjct: 260 KTYGEKLKKFIDNDG-RIRAHWRLIGSRSGRMSCNNPPLQAMP------GNSREFFVADE 312

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             KLI +DYSQIELR+LA I+K   L   F N +D+H   A+ IF   I+++S + R+ A
Sbjct: 313 GYKLIGSDYSQIELRVLASISKDETLISYFNNGIDLHLGTASLIFKKPIDEISKEERQVA 372

Query: 802 KTINFSIIYGISPFRLATQL-----RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           K++NF I+YGI+ + +   L          EA  Y   + + +P + E  +         
Sbjct: 373 KSLNFGIVYGITAYGIQKNLRKSGVDTSLEEAEKYRIEFLNVYPKVKELQDSLLKA---- 428

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
            Y++T+ GRR     +               +N PIQGSAA+  + A+  + + +++   
Sbjct: 429 DYIKTLGGRRWQGGSLT----------MTQRLNLPIQGSAAEGLKEALALLVERMKES-- 476

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             +++  IHDE++ EVPE+E   A  I+   M +     +   +P+ V+  VSNNW
Sbjct: 477 -WRLVAVIHDEILLEVPEDEAEEAKNILESCMVEGMKTIVK-DIPIIVDSSVSNNW 530


>gi|195329438|ref|XP_002031418.1| GM25985 [Drosophila sechellia]
 gi|194120361|gb|EDW42404.1| GM25985 [Drosophila sechellia]
          Length = 2006

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 261/563 (46%), Gaps = 53/563 (9%)

Query: 442  KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRGFEDIMLMSYVL 496
            +   T   +  L      +    + H+ K    +L +       IS++  ED  + +++L
Sbjct: 1461 QGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKMLRKAIPQLQKISVK-LEDAKVANWLL 1519

Query: 497  DSGRSSHDIASIAQKWLSYTR--KEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQL 552
               ++  +  ++ Q +         +  S +  SS  +D  S    +      S V L  
Sbjct: 1520 QPDKTV-NFLNMCQTFAPECTGLANLCGSGRGYSSYGLDTSSAILPRIRTAIESCVTL-- 1576

Query: 553  WLLLRPKLI------VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
              +L+ ++          LL  +  ++ P+   + QME+ G    +  L+Q+   +   +
Sbjct: 1577 -HILKGQIENLGRIGEGDLLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVM 1635

Query: 607  LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
              LE  IY+  G +FNL S + +  +L    K         G+  T+ Q LE++N    P
Sbjct: 1636 KKLETKIYEQHGSRFNLGSSQAVAKVLGLHRKA-------KGRVTTSRQVLEKLNS---P 1685

Query: 667  IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I   IL +R+LS + +     L               S+  T TGR++  EPNLQN+  +
Sbjct: 1686 ISHLILGYRKLSCLLAKSIQPLMECCQAD---RIHGQSITYTATGRISMTEPNLQNVAKE 1742

Query: 727  -------TDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
                     +    R  F+     + L+SAD+ Q+E+RILAH+++   L +V  +  D+ 
Sbjct: 1743 FCIQVGADAVNISCRSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLF 1802

Query: 779  RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
              +AA    +   +V+P +R   K + + I+YG+    LA  L     EA     ++   
Sbjct: 1803 IAIAAHWNKIKESEVTPDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARILSDQFHEA 1862

Query: 839  FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            + GI +Y  +  NF R  G+VETI GRR + + INS    ++   ER A+N+ IQGSAAD
Sbjct: 1863 YKGIRDYTRRVVNFARGKGFVETITGRRRYLEMINSDMEHLKK-AERQAVNSTIQGSAAD 1921

Query: 899  ITRRAMISVHKSLEDHK----LATK---MLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
            I + A++ + K++E ++    L  K   +++ +HDEL+FEVP  +    ++++  +ME  
Sbjct: 1922 IAKNAILKMEKNIERYREKLALGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESC 1981

Query: 952  CLPKINLRVPLKVNIKVSNNWQE 974
                + L VPLKV +++  +W E
Sbjct: 1982 ----VKLSVPLKVKLRIGRSWGE 2000


>gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5]
          Length = 825

 Score =  317 bits (812), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 151/708 (21%), Positives = 290/708 (40%), Gaps = 87/708 (12%)

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF----LERLQKLSQYPI 363
               KGI   T    +     +  +S+S        E  P        +  +    +   
Sbjct: 43  FAGKKGIGDYTGKRVEYNGYANWIASISPAQLHFKPEMKPVFDATVENIHDIINGREKIA 102

Query: 364 NNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
               Y  I +  + +++++ +  +  G  +F   T  +       + ++IS  + +    
Sbjct: 103 KAGDYRPITDPDEAEEYIKMVYNMVIGPVAFDSETSALYCRDGYLLGVSISHQEYQGVY- 161

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYG 480
                                + LT+  + YL+K  ++E+   + HN+K+D        G
Sbjct: 162 ------------------IDSDCLTEVAVYYLQKILDSENHTIVFHNLKFDMHFYKYHLG 203

Query: 481 ISM------RGFEDIMLMSYVLDSGRSSHDIASIAQKW---------LSYTRKEILKS-- 523
           ++       R   D ML  YVLD  R +H + S+A K+         L   + +  K+  
Sbjct: 204 LTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHK 263

Query: 524 -RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVS 581
            +K     D I    +  +A ++++  ++L     PK+   EKL  +Y  +  P    + 
Sbjct: 264 IKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQ 323

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDI 632
           ++E  G+ I  D LK+   +++ NL    E +Y             E FN +S KQL  +
Sbjct: 324 RVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVL 383

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF  +      K       +T  +        +PI K +LE R+L+K+ STY + +   I
Sbjct: 384 LFDYVGLTPTGKLTDTGADSTDAEALNELATQHPIAKTLLEIRKLTKLISTYVEKILLSI 443

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +        F     T +GRL+S          + +    I+   ++PP  ++I+ D + 
Sbjct: 444 DADGCIRTGF-HEHMTTSGRLSSSGKLNLQQLPRDE--SIIKGCVVAPPGYRVIAWDLTT 500

Query: 753 IELRILAHIAKITPLYQVFENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRH 800
            E+   A ++    + QVF N         D H  +A  +F +  E     K+ P +R+ 
Sbjct: 501 AEVYYAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQA 560

Query: 801 AKTINFSIIYGISPFRLATQLR----------------IPRSEAADYIKRYFHRFPGIHE 844
           AK I F I+YG  P ++A  +                    ++A +YI+ YF +FP +  
Sbjct: 561 AKAITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKR 620

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +I+K  + ++ +G++ + FGR+     I+S    ++    R+  NA IQ +++D      
Sbjct: 621 WIDKCHDQIKNHGFIYSHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGA 680

Query: 905 ISVHKSLEDHKLATKM--LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +     +    L  +M  ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 681 VDADNEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEILIRNIQK 728


>gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35]
 gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35]
          Length = 855

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 151/708 (21%), Positives = 290/708 (40%), Gaps = 87/708 (12%)

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF----LERLQKLSQYPI 363
               KGI   T    +     +  +S+S        E  P        +  +    +   
Sbjct: 73  FAGKKGIGDYTGKRVEYNGYANWIASISPAQLHFKPEMKPVFDATVENIHDIINGREKIA 132

Query: 364 NNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
               Y  I +  + +++++ +  +  G  +F   T  +       + +++S  + +    
Sbjct: 133 KAGDYRPITDPDEAEEYIKMVYNMVIGPVAFDSETSALYCRDGYLLGVSMSHQEYQGVY- 191

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYG 480
                                + LT+  + YL+K  ++E+   + HN+K+D        G
Sbjct: 192 ------------------IDSDCLTEVAVYYLQKILDSENHTIVFHNLKFDMHFYKYHLG 233

Query: 481 ISM------RGFEDIMLMSYVLDSGRSSHDIASIAQKW---------LSYTRKEILKS-- 523
           ++       R   D ML  YVLD  R +H + S+A K+         L   + +  K+  
Sbjct: 234 LTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHK 293

Query: 524 -RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVS 581
            +K     D I    +  +A ++++  L+L     PK+   EKL  +Y  +  P    + 
Sbjct: 294 IKKEDFTYDLIPFDIMWPYAAKDTDATLRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQ 353

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDI 632
           ++E  G+ I  D LK+   +++ NL    E +Y             E FN +S KQL  +
Sbjct: 354 RVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYTYPEVVQLEKDQNEAFNPNSVKQLRVL 413

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF  +      K       +T  +        +PI K +LE R+L+K+ STY + +   I
Sbjct: 414 LFDYVGLTPTGKLTDTGADSTDAEALNELSTQHPIAKTLLEIRKLTKLISTYVEKILLSI 473

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +        F     T +GRL+S          + +    I+   ++PP  ++I+ D + 
Sbjct: 474 DADGCIRTGF-HEHMTTSGRLSSSGKLNLQQLPRDE--SIIKGCVVAPPGYRVIAWDLTT 530

Query: 753 IELRILAHIAKITPLYQVFENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRH 800
            E+   A ++    + QVF N         D H  +A  +F +  E     K+ P +R+ 
Sbjct: 531 AEVYYAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQA 590

Query: 801 AKTINFSIIYGISPFRLATQLR----------------IPRSEAADYIKRYFHRFPGIHE 844
           AK I F I+YG  P ++A  +                    ++A +YI+ YF +FP +  
Sbjct: 591 AKAITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKR 650

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +I+K  + ++ +G++ + FGR+     I+S    ++    R+  NA IQ +++D      
Sbjct: 651 WIDKCHDQIKNHGFIYSHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGA 710

Query: 905 ISVHKSLEDHKLATKM--LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +     +    L  +M  ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 711 VDADNEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEILIRNIQK 758


>gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 152/708 (21%), Positives = 290/708 (40%), Gaps = 87/708 (12%)

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF----LERLQKLSQYPI 363
               KGI   T    +     +  +S+S        E  P        +  +    +   
Sbjct: 73  FAGKKGIGDYTGKRVEYNGYANWIASISPAQLHFKPEMKPVFDATVENIHDIINGREKIA 132

Query: 364 NNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
               Y  I +  + +++++ +  +  G  +F   T  +       + ++IS  + +    
Sbjct: 133 KAGDYRPITDPDEAEEYIKMVYNMVIGPVAFDSETSALYCRDGYLLGVSISHQEYQGVY- 191

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYG 480
                                + LT+  + YL+K  ++E+   + HN+K+D        G
Sbjct: 192 ------------------IDSDCLTEVAVYYLQKILDSENHTIVFHNLKFDMHFYKYHLG 233

Query: 481 ISM------RGFEDIMLMSYVLDSGRSSHDIASIAQKW---------LSYTRKEILKS-- 523
           ++       R   D ML  YVLD  R +H + S+A K+         L   + +  K+  
Sbjct: 234 LTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHK 293

Query: 524 -RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVS 581
            +K     D I    +  +A ++++  ++L     PK+   EKL  +Y  +  P    + 
Sbjct: 294 IKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQ 353

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDI 632
           ++E  G+ I  D LK+   +++ NL    E +Y             E FN +S KQL  +
Sbjct: 354 RVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVL 413

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF  +      K       +T  +        +PI K +LE R+L+K+ STY + +   I
Sbjct: 414 LFDYVGLTPTGKLTDTGADSTDAEALNELATQHPIAKTLLEIRKLTKLISTYVEKILLSI 473

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +        F     T +GRL+S          + +    I+   I+PP  ++I+ D + 
Sbjct: 474 DADGCIRTGF-HEHMTTSGRLSSSGKLNLQQLPRDE--SIIKGCVIAPPGYRVIAWDLTT 530

Query: 753 IELRILAHIAKITPLYQVFENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRH 800
            E+   A ++    + QVF N         D H  +A  +F +  E     K+ P +R+ 
Sbjct: 531 AEVYYAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQA 590

Query: 801 AKTINFSIIYGISPFRLATQLR----------------IPRSEAADYIKRYFHRFPGIHE 844
           AK I F I+YG  P ++A  +                    ++A +YI+ YF +FP +  
Sbjct: 591 AKAITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKR 650

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +I+K  + ++ +G++ + FGR+     I+S    ++    R+  NA IQ +++D      
Sbjct: 651 WIDKCHDQIKNHGFIYSHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGA 710

Query: 905 ISVHKSLEDHKLATKM--LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +     +    L  +M  ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 711 VDADNEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEILIRNIQK 758


>gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5]
 gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 151/708 (21%), Positives = 290/708 (40%), Gaps = 87/708 (12%)

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF----LERLQKLSQYPI 363
               KGI   T    +     +  +S+S        E  P        +  +    +   
Sbjct: 73  FAGKKGIGDYTGKRVEYNGYANWIASISPAQLHFKPEMKPVFDATVENIHDIINGREKIA 132

Query: 364 NNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
               Y  I +  + +++++ +  +  G  +F   T  +       + ++IS  + +    
Sbjct: 133 KAGDYRPITDPDEAEEYIKMVYNMVIGPVAFDSETSALYCRDGYLLGVSISHQEYQGVY- 191

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYG 480
                                + LT+  + YL+K  ++E+   + HN+K+D        G
Sbjct: 192 ------------------IDSDCLTEVAVYYLQKILDSENHTIVFHNLKFDMHFYKYHLG 233

Query: 481 ISM------RGFEDIMLMSYVLDSGRSSHDIASIAQKW---------LSYTRKEILKS-- 523
           ++       R   D ML  YVLD  R +H + S+A K+         L   + +  K+  
Sbjct: 234 LTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHK 293

Query: 524 -RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVS 581
            +K     D I    +  +A ++++  ++L     PK+   EKL  +Y  +  P    + 
Sbjct: 294 IKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQ 353

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDI 632
           ++E  G+ I  D LK+   +++ NL    E +Y             E FN +S KQL  +
Sbjct: 354 RVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVL 413

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF  +      K       +T  +        +PI K +LE R+L+K+ STY + +   I
Sbjct: 414 LFDYVGLTPTGKLTDTGADSTDAEALNELATQHPIAKTLLEIRKLTKLISTYVEKILLSI 473

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +        F     T +GRL+S          + +    I+   ++PP  ++I+ D + 
Sbjct: 474 DADGCIRTGF-HEHMTTSGRLSSSGKLNLQQLPRDE--SIIKGCVVAPPGYRVIAWDLTT 530

Query: 753 IELRILAHIAKITPLYQVFENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRH 800
            E+   A ++    + QVF N         D H  +A  +F +  E     K+ P +R+ 
Sbjct: 531 AEVYYAAVLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQA 590

Query: 801 AKTINFSIIYGISPFRLATQLR----------------IPRSEAADYIKRYFHRFPGIHE 844
           AK I F I+YG  P ++A  +                    ++A +YI+ YF +FP +  
Sbjct: 591 AKAITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKR 650

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +I+K  + ++ +G++ + FGR+     I+S    ++    R+  NA IQ +++D      
Sbjct: 651 WIDKCHDQIKNHGFIYSHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGA 710

Query: 905 ISVHKSLEDHKLATKM--LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           +     +    L  +M  ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 711 VDADNEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEILIRNIQK 758


>gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279]
 gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279]
          Length = 1273

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 152/286 (53%), Gaps = 8/286 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           + + ++LVDG    YR+++A   L+    G P  AI GF   L KLL+            
Sbjct: 18  RPDRIWLVDGHHLAYRSYFAFEKLATSR-GEPTQAIFGFLRTLLKLLKEDG-----DCVI 71

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD P  TFR++ + +YKA R   P+   PQL  ++      G+  +E+ G+EADD+I 
Sbjct: 72  VVFDPPTRTFRHDAFEEYKAGRAATPDDFHPQLEKIKELVDLMGLQRLEVPGYEADDVIG 131

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    AE+EG+ V I++ D+D  QL+S    +        +  + V +K+G+   + V  
Sbjct: 132 TLAKKAEQEGYPVRILTGDRDSFQLLSEAVQVMLP-DGRLMHPQAVQEKYGVSVAQWVDY 190

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           ++L GDS DN+PG  GIG KTAA LLQE+G+LE +  N   +   K R ++ E  +  +L
Sbjct: 191 RSLVGDSSDNLPGAKGIGEKTAAKLLQEWGSLEGLYANLEALSP-KIRASLEESRDNVQL 249

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           SR L ++ TD+P+ +        + +   L   L+ LEF  ++  +
Sbjct: 250 SRTLSLIHTDLPLELDFRDCHRREPDRGALREALEKLEFGSILREL 295



 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 215/389 (55%), Gaps = 35/389 (8%)

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
           D +  +   ++ L+ +      GK    +  L  LKKF E    +      K   ++  +
Sbjct: 322 DRAQPMWANWLGLAAYAG----GKVYRGQPSLQELKKFPEIRSMV-----AKDLSVLALK 372

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            G+ +   +D ML++Y+ D   S  D AS  +++                          
Sbjct: 373 EGVWVPPGDDPMLLAYLYDPSNS--DPASTVRRY---------------------GAGDW 409

Query: 539 QEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                E +     LW  L+ ++    K+  +Y++++KP+  V++++E  GI ++ + L Q
Sbjct: 410 GSDPGERAQAAHTLWETLQSRIGENPKIEWLYQQIEKPLSAVLARIEARGISLNAEYLLQ 469

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656
           +S E++K +  LE  I+ L+G  FN++S  QL  +L+ +LK    G KT+TG+  T A  
Sbjct: 470 LSEELAKEISYLEAEIHRLAGRSFNVNSRDQLEVVLYDELKLSAPGRKTQTGKRSTAASA 529

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
           LE++  G +PII+ IL +R+L+K+KSTY D LP  I+ +T R+HT ++   T TGRL+S+
Sbjct: 530 LEELL-GQHPIIERILTYRELTKLKSTYLDPLPKLIHPKTGRLHTRFNQTGTATGRLSSV 588

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP++T++G++IR+AF + P  +L+ ADYSQIELR+LAH++    L  VF    D
Sbjct: 589 DPNLQNIPVRTEIGRRIRKAFRAAPGMRLVVADYSQIELRVLAHLSGDENLINVFREGRD 648

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           IH   AA +FG+  +KV  + RR AK + 
Sbjct: 649 IHTQTAAWMFGLEPDKVGAEQRRAAKCLV 677



 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 102/173 (58%), Gaps = 6/173 (3%)

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            TINF ++YG+S  RL+ +L I  +EA  +I+RYF  +P + E+IE+     RQ GYVET+
Sbjct: 1106 TINFGVLYGMSAHRLSNELSISYAEAEGFIERYFASYPKVREWIERVLADARQTGYVETM 1165

Query: 863  FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            FGRR    ++ S   S+R   ER A N P+QG+AAD+ + AM+ +   L    L   ++L
Sbjct: 1166 FGRRRFVADLGSRVRSVREAAERMAFNMPVQGTAADLMKLAMVKLQPEL--EPLEAHLVL 1223

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            Q+HDEL+ E P ++    + ++   M++A      L VPL+V   +  NW E 
Sbjct: 1224 QVHDELLVEAPADKAEAVAGVVREVMQQA----WALAVPLEVGTGIGENWLEA 1272


>gi|23007000|ref|ZP_00049062.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 552

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 131/442 (29%), Positives = 207/442 (46%), Gaps = 51/442 (11%)

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
              + +H  ++FD    +FR E++PDYK +RP  P+ L  Q+PL+R A +AFG+ A+E++
Sbjct: 83  PGVMPTHLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELE 142

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKI 163
            +E+DD+I+TY   AE  G  V I+S+DKDLMQLVS     YD             E  +
Sbjct: 143 RYESDDLISTYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNL 202

Query: 164 DIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
           D E +I KW G+ PE++    AL GD+ DN+PG+PGIG KTAA L++EYG+L+ +L  A 
Sbjct: 203 DREAIIAKWEGLSPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLDQLLERAG 262

Query: 223 RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
            IKQ KRRE +L   + ARLSR+LV L  +VP+ +PL+ L +   +  +L+ FLKA+EF 
Sbjct: 263 DIKQPKRRETLLANIDQARLSRRLVALEENVPVPVPLDELGVPQPDPQKLVGFLKAMEFN 322

Query: 283 KLINRVATTYDCDAANIEPVVL-----------------DINTTENKGIAIETEIDRDTT 325
            L  R+A     D   ++P                    D        + ++ E      
Sbjct: 323 TLTRRIAQMLHVDPEAVKPDPALLPGAQPHAYTNAAGGSDAVPFFGDDVPVDPETAAAPE 382

Query: 326 IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY-------------PINNDSYTKIV 372
            K         +         P +   +R                    P +  +Y  I 
Sbjct: 383 RKDGAAPPEGGEVDPFADLDLPDQAPKKRGPGEPTPSALVAARAAEAVKPFDTGAYETIS 442

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
               ++ W+ +    G  +    TD +DA  +  + ++++T+  +         ++I L+
Sbjct: 443 TVAQLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATVPGR--------AVYIPLA 494

Query: 433 V--HTSQDSTGKNTLTKEILSY 452
                 Q          E+   
Sbjct: 495 HVKPEGQGGDLFGNGGGEVAEA 516


>gi|85057346|ref|YP_456262.1| DNA polymerase I [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789451|gb|ABC65183.1| DNA polymerase I [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 847

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 187/943 (19%), Positives = 352/943 (37%), Gaps = 138/943 (14%)

Query: 5   NHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            HL LVDG+S ++RA++AT      L +   G+  NA+  F  M  K+L+ ++      +
Sbjct: 2   KHLVLVDGNSLLFRAYHATASKYKPLLQNKKGIYTNALLSFIRMFEKILEETKG-----Y 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD P  T R+++Y  YK  RP+ P  L+ Q+PL++   +  G+       +EADDI
Sbjct: 57  ILVAFDTPKTTKRHQLYDAYKQGRPETPSALISQIPLIKQYLELIGVKYHAQDEYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A  +   V+I S+D DL+QLV     +    K     +      +++++G+  
Sbjct: 117 IGTLAKEASNQNNTVSIYSSDCDLLQLVDKKITVCLLKKGLREIKYYTPTTLLEEYGLKE 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +M+  ++L GD  DNI G+ GIG KTA  LLQEY  L+N++ N   IK    +  I   
Sbjct: 177 YQMIDYKSLIGDPSDNIKGVLGIGPKTAQKLLQEYDTLDNLMQNLDNIKP-ILKTKIQNS 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                LS+ L  +   VP+        ++      L +F + ++F     R+A T     
Sbjct: 236 QTDLELSKILTAINLKVPLPFDCMQTEIQIRLEQNLKNFYEEMDF----RRLAITKYARI 291

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
                     N   +       E  +D+ ++     + ++Q   I +         +  +
Sbjct: 292 EKEINTTNKYNKEASLKAKEVQEAVKDSNLENDNNLNQTNQIRPIATTNNNDNNTPKVQE 351

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           + ++ P  N  Y  I +   +  ++ +++     +     +  +  ++    I  S  + 
Sbjct: 352 QGAKTPQINFHYQIIKDQNALNTFLDQIQPHEIWACFFELEKENDSNTFLQGIGFSNGNA 411

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                      FID ++  + ++                + ++ +F KI  + +  +  L
Sbjct: 412 ---------HFFIDANLAFANNN-------------FCNYLKDANFYKIVFHNQAIQFFL 449

Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRS---SHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
                 + G   D++  SY+L   ++   SH I+ I     +    ++  S+K  I   K
Sbjct: 450 KTQHQQLNGVIFDLICASYLLFPLKNLEFSHIISKIDILNNTNYVSQL--SQKILILEQK 507

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++      HAI+NS             L  +  L +++ ++ P+ +V++Q+E        
Sbjct: 508 VAFKSFLLHAIKNSIFHY---------LKAQNQLFLFQEIELPLSNVLAQLEYE------ 552

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             L Q    I  N   +E+NIY+                I   + K P   + +    + 
Sbjct: 553 TNLLQQKQIIEAN--PIEKNIYE---------------KIEMQQEKIPKTNQMQEQAQEK 595

Query: 653 TAQDLEQINCGDN-PIIKNILEWRQLSKIKSTYADSLPNHI-NKRTQRVHTFYSLASTMT 710
            +   +  N  +N      I + + L  +         N   NK+T       +      
Sbjct: 596 DSDQNQYTNLKNNQEQENQINQLKSLKDVFGYQNSFFLNMTKNKKTYNYLINDNFFCFSL 655

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
             LA+L              QKI+  F                      H+         
Sbjct: 656 KILATLGN-----------IQKIKNYFKIKKN-----------------HLLNDEQTLHF 687

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F N                  ++    +  ++T NF          +  +L I  + A D
Sbjct: 688 FVNE--------------PTSEIKKDSQNLSETTNF--CLDSWIKEILLELNISSNCAQD 731

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN-SPKSSIRNINERAAIN 889
           +I +Y      I  Y +     +++  Y  T+  R++ +     +P   +  +      N
Sbjct: 732 FINQYLSLDDEIINYYQNLLQQIKEKKYALTLLKRKVFFGNQKLTPNLDLETLYVFLQEN 791

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKM-------LLQIH 925
                   D+ + A++ + + LE H    K+        LQ H
Sbjct: 792 IL------DMKKIAILQLLRHLERHNENAKITYFALNNYLQQH 828


>gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7]
 gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7]
          Length = 855

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 153/708 (21%), Positives = 294/708 (41%), Gaps = 87/708 (12%)

Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF----LERLQKLSQYPI 363
               KGI   T    +     +  +S+S        E  P        +  +    +   
Sbjct: 73  FAGKKGIGDYTGKRVEHGGYANWIASISPAQLHFKPEMKPVFDATVESIHDIINGREKIA 132

Query: 364 NNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
               Y  I +  + +++++ +  +  G  +F   T  + A     + +++S  + +    
Sbjct: 133 KAGDYRPITDPDEAEEYIKMVYNMVIGPIAFDSETSALYARDGYLLGVSMSHQEYQGVY- 191

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYG 480
                                +++T+  + YL+K  ++++   + HN+K+D     +  G
Sbjct: 192 ------------------IDSDSITEVAVHYLQKILDSKNHQIVFHNLKFDMHFYSYHLG 233

Query: 481 ISM------RGFEDIMLMSYVLDSGRSSHDIASIAQKW---------LSYTRKEILKS-- 523
           +S       R   D ML  YVLD  R +H + S+A K+         L   +++  K+  
Sbjct: 234 LSFEKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDYDFELDKFKEDYCKAHK 293

Query: 524 -RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVS 581
            +K     D I    +  +A ++++  L+L     PK+   EKL  +Y  +  P    + 
Sbjct: 294 IKKEDFSYDLIPFDIMWPYAAKDTDATLRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQ 353

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDI 632
           ++E  G+ I  D LK+   +++ NL    E +Y             E FN +S KQL  +
Sbjct: 354 RVEDRGVPISVDRLKEAQYQLTHNLNKAREKLYTYPEVVQLEKDQNEAFNPNSVKQLRVL 413

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           LF  +      K       +T  +        +PI K +LE R+L+K+ STY + +   I
Sbjct: 414 LFDYVGLTPTGKLTDTGADSTNAEALNELATQHPIAKTLLEIRKLTKLISTYVEKILLSI 473

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +        F     T +GRL+S          + +    I+   ++PP  ++I+ D + 
Sbjct: 474 DADGCIRTGF-HEHMTTSGRLSSSGKLNLQQLPRDE--SIIKGCVVAPPGYRVIAWDLTT 530

Query: 753 IELRILAHIAKITPLYQVFENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRH 800
            E+   A ++    + QVF N         D H  +A  +F +  E     K+ P +R+ 
Sbjct: 531 AEVYYAAVLSGDRNMQQVFINMKNEPDKYPDFHSNIAHMVFKLTCEPRDVKKLFPALRQA 590

Query: 801 AKTINFSIIYGISPFRLATQLR----------------IPRSEAADYIKRYFHRFPGIHE 844
           AK I F I+YG  P ++A  +                    ++A DYI+ YF +FP +  
Sbjct: 591 AKAITFGILYGSGPAKVAHSVNEALLEQAAKTGEPFVECTVADAKDYIETYFGQFPQLKR 650

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +I+K  + ++  G++ + FGR+     I+S    ++    R+  NA IQ +++D      
Sbjct: 651 WIDKCHDQIKNFGFIYSHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGA 710

Query: 905 ISVHKSLEDHKLATKM--LLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           I   + +    L  +M  ++ +HD +V  V E+ I   ++I++ +++K
Sbjct: 711 IDADEEILSLGLGKEMKIVMLVHDSVVAIVREDLIDQYNEILIRNIQK 758


>gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba]
 gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba]
          Length = 2043

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 149/595 (25%), Positives = 266/595 (44%), Gaps = 54/595 (9%)

Query: 406  PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
               ++    D               +++     +TG+   T   +  L K    +    +
Sbjct: 1471 IAGLSFCLADNVVYY----------MNMQNDDRATGQGVPTILKVQELCKLLARKDLTIV 1520

Query: 466  GHNIKYDKLVLHRYGISMRGF----EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK--E 519
             H+ K    +L +    ++      ED  + +++L   ++     ++ Q +        +
Sbjct: 1521 MHDGKEQLKILLKAIPQLQKICAKLEDPKVANWLLQPDKTM-TFYNMCQTFAPECTALAD 1579

Query: 520  ILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDK 574
            +  S +  SS  +D  S    +  A   + V + +       L       LL  +  ++ 
Sbjct: 1580 LCGSGRGYSSYGLDTSSAILPKIRASIEACVTVHILKGQTENLGRIGSGQLLKFFHDIEM 1639

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P+   +  ME  G    Q  L+Q+  ++   +  LE  IY+  G +FNL S + +  +L 
Sbjct: 1640 PIQLTLCHMEFVGFPAQQQRLQQLYQKMVAVMRKLETKIYEQHGSRFNLGSSQTVAKVLG 1699

Query: 635  TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
               K         G+  T+ Q LE+IN    PI + IL +R+++ + +     L      
Sbjct: 1700 LHRKA-------NGRVTTSRQVLEKINS---PISQLILGYRKVAGLLAKSIQPLLKCCEA 1749

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-------TDLGQKIRRAFIS-PPTKKLI 746
                     S+  T TGR++  EPNLQN+  +         L    R  F+     + L+
Sbjct: 1750 D---RIHGQSITYTATGRISMTEPNLQNVAKEFCIQVGSDALRIACRLPFVPKDEDRCLL 1806

Query: 747  SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            SAD+ Q+E+RILAH+++   L +V  +  D+   +AA    +   +VS  +R   K + +
Sbjct: 1807 SADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIEESEVSQDLRNSTKHVCY 1866

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
             I+YG+    LA  L     EA    +++   + GI EY  +   F R  G+VETI GRR
Sbjct: 1867 GIVYGMGMRSLAESLNCSEQEARMISEQFHQAYKGIREYTSRVVKFARNQGFVETITGRR 1926

Query: 867  IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-------TK 919
             + D INS +  ++N  ER AIN+ IQGSAADI + A++ + K++E ++           
Sbjct: 1927 RYLDNINSDEEQLKNQAERQAINSTIQGSAADIAKSAILKMEKNIERYRDKLVLGDQSVD 1986

Query: 920  MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +++ +HDEL+FEVP  +    ++++  +ME      + L VPLKV +++  +W E
Sbjct: 1987 LIMHLHDELIFEVPAAKAKKIAKVLSLTMENC----VKLSVPLKVKLRIGRSWGE 2037


>gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens]
          Length = 831

 Score =  313 bits (802), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 167/757 (22%), Positives = 278/757 (36%), Gaps = 170/757 (22%)

Query: 378 QQWVQKLETIGSA---SFKIITDTMDAFHSKPIA---IAISTLDQKDDTSFKVETIFIDL 431
           +  + +LE    A   +     D +D     P+    +   T+    D S+  E     L
Sbjct: 85  EAVLARLEAADPAIYHAVDTEVDDIDLSREGPVGNGRVTCFTVYSGPDFSYDGEAAGKAL 144

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIM 490
            V         + +   +L     +F +E   K+ HN  +D+ V+  +G++ RGF  D M
Sbjct: 145 FV---------DCVDAAVLDVFAPWFADESRRKVWHNYGFDRHVVENHGLACRGFAGDTM 195

Query: 491 LMSYVLDSGRSS------HDIASIAQKWLSYTRKEILKSR-------------------- 524
            M+ + DS R        + + ++++  +S    ++                        
Sbjct: 196 HMARLHDSSRLRTHGGDGYSLEALSRDLISAGEAKVSMKALFPEFFRKTAFADRANGSAS 255

Query: 525 ----KSSIPI-----DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE------------ 563
               +  + I     D  +      +A  ++    Q+   LR +L  +            
Sbjct: 256 RDAARRGLDILRMQTDDATRDAFVCYAAYDAKSTWQVHDALRRRLERQAWAPMTDDPPRS 315

Query: 564 -----KLLHVYERLDKPMIDVVSQMEITGIQIDQD-LLKQVSAEISKNLLSLEENIYDLS 617
                 +   YER   P   V++ ME  GI +D    L  V    + +  +  +   D +
Sbjct: 316 PETPKTMWDFYERYFVPFGKVLTDMEAAGIYVDAASHLTDVEKAATADKAAALKTFRDWA 375

Query: 618 -------GEKFNLSSPKQLGDILFTK---------------------------------- 636
                  G   N +S KQ+  +LF                                    
Sbjct: 376 VERMGPDGALLNPASSKQIQTLLFGGAMNQKTGEYLETEREFDVDLPPELLPDGDDGASD 435

Query: 637 ---------LKFPSGAKTKTGQWKTTAQDLEQIN---CGDNPI----------------- 667
                    +       T +G    TA  L ++      D P+                 
Sbjct: 436 RTRKLLVRSVGLTPTKYTTSGAPSCTADVLRELAGRPTDDPPVYGAAHAGFGGGPAGEEA 495

Query: 668 ---IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
              +  +     +  + +T+ + L    +  + RVH   +L +T TGRL+S  PNLQN P
Sbjct: 496 CVALDALCNMGSIDTMLNTFINPLRLLADDES-RVHCSLNL-NTETGRLSSRRPNLQNQP 553

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                   IR+AF +     L+ ADY Q+ELR+LAH+A+   +   F      H   A  
Sbjct: 554 ALEKDQYFIRKAFRAKEGCALVVADYGQLELRLLAHVARCESMLVAFREGGCFHSRTAVG 613

Query: 785 IFGVNIE------------------------KVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           +F    E                         V    RR AKT+NFSI YG +   LA  
Sbjct: 614 MFDHVREAVESGAVLLEKGSSPEDSDKPLVKDVYASERRRAKTLNFSIAYGKTAHGLAKD 673

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             + + EA D ++ ++   P +  + ++T    ++ GY  T+ GRR +  +I     +++
Sbjct: 674 WGVKQEEAQDMLRAWYDDRPEVEAWQKRTIADAKRTGYTTTLMGRRRNLPDILEKNRALQ 733

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               RAAIN PIQGSAAD+   AM+ + +S     L   +LLQIHDE++ E PE+    A
Sbjct: 734 GRGARAAINTPIQGSAADVVMMAMLKIAESKTLKDLGYTLLLQIHDEVILEGPEQHKEAA 793

Query: 941 SQIIVHSMEKA--CLPKINLRVPLKVNIKVSNNWQEE 975
              +   ME     +    L V L V+ K +  W E 
Sbjct: 794 LAEVTKLMEAPFDGIGLDPLHVDLTVDAKTAATWYEA 830


>gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 317

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 119/316 (37%), Positives = 180/316 (56%), Gaps = 7/316 (2%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E      +P ++ +L  R   K+      +L   +     R+HT +      TGRL+S++
Sbjct: 3   ELARYNPHPFLEALLYHRDRIKLL-QIVRNLRERV-ADDGRIHTTFGQTVAATGRLSSID 60

Query: 718 PNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           PNLQNIP +T  GQKIR AF+   P   L++ADYSQIE+RI+AH++    L   F +  D
Sbjct: 61  PNLQNIPARTVDGQKIREAFVPQKPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGED 120

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           +HR VAA ++GV  ++V+P  R H K  ++ + YG+S + LA QL I + +A   +  YF
Sbjct: 121 LHRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYGLSAYGLAAQLNISQRDAKQLMDTYF 180

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RF  + EY+ +      + GY ET+ GRR +  E+ S   ++ +   RAA+NAPIQGSA
Sbjct: 181 ERFGKVREYLNQIVATATRVGYTETMRGRRRYLPELRSTNRNVADNARRAALNAPIQGSA 240

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
           AD+ + AM+ V   L   +L +++LLQ+HDELV EV   E      ++  +M        
Sbjct: 241 ADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETERLETLVRQAMTGVA---- 296

Query: 957 NLRVPLKVNIKVSNNW 972
            LRVPL+V++ +  NW
Sbjct: 297 KLRVPLEVSVGIGPNW 312


>gi|163782128|ref|ZP_02177127.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882660|gb|EDP76165.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 291

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 103/286 (36%), Positives = 163/286 (56%), Gaps = 9/286 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++L+D SSFIYR F+A P L+ K DG P  AI GF   L  ++++ R E    +  V+FD
Sbjct: 6   IYLIDASSFIYRGFFALPPLTTK-DGFPTGAIYGFLRALLSIMKSERPE----YLVVVFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +PA T R+ ++ +YKA RP +P+ L  Q+P+++      GIP +E++G+EADD+IA    
Sbjct: 61  HPAPTKRDSLFKEYKAGRPSMPDPLRLQIPVIKELLWLMGIPTLEVEGYEADDLIAILAK 120

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
              ++GF V I + DKD++QLVS    + + +  E  + + V  K+G+PP+K+    AL 
Sbjct: 121 RFSEKGFKVKIYTPDKDMLQLVSENVVVINPMNWEVFNPDKVKDKFGVPPQKVADYLALV 180

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD IDN+PG+ G+G KTA  L++++G + NIL      K+           E   LS +L
Sbjct: 181 GDKIDNVPGVRGVGPKTAVKLIEKFGGVPNILERWEEFKKIYPEAK----REELELSYQL 236

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           V   TD  +++  E   L + +  RL   L+ LE   ++  V   +
Sbjct: 237 VKPMTDAEVSLSDEDFKLREPDINRLRKRLEELEMKSILKDVEKLF 282


>gi|309805210|ref|ZP_07699262.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308165444|gb|EFO67675.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           09V1-c]
          Length = 446

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 104/325 (32%), Positives = 168/325 (51%), Gaps = 11/325 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++   
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIRDK 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D  
Sbjct: 238 NNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEIDNK 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDR 322
             +    +I   +N      T+ D 
Sbjct: 298 VQDECHYEILDKDNLSEIFATDFDH 322


>gi|219110613|ref|XP_002177058.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411593|gb|EEC51521.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 389

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 122/305 (40%), Positives = 179/305 (58%), Gaps = 14/305 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +  + L LVD S++I+RA+Y+ P + R  DG+P  A+ GFC+M+ +L+ N   E      
Sbjct: 56  KTSDPLILVDASAYIFRAYYSMPPIHR-SDGMPTGAVMGFCSMIMRLILNRIVEGERPRL 114

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            ++FD    TFR+ +YP+YK NRP  P  L+PQ  LVR A +A+GIP IE   FEADD+I
Sbjct: 115 VLVFDAKGKTFRHSLYPEYKGNRPDAPVDLVPQFALVREAAKAYGIPQIEAATFEADDVI 174

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPT-----TCLYDTVKEEKIDIEHVIKKWGIPP 176
           AT   +A +EG    I+S DKDL QL++         + D +   +I  + V++KWG  P
Sbjct: 175 ATLATMAIEEGIDTNILSGDKDLWQLITDREEIPSVHMIDPMTMGRITYDEVVEKWGCGP 234

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             +  + AL GDS DN+PG+PGIG K AALL++E+G+LE +L N   +KQ+ RRE +   
Sbjct: 235 RLLGDILALAGDSADNVPGVPGIGPKIAALLIEEFGSLEKLLANVDTVKQRARREKLKAN 294

Query: 237 AETARLSRKLVMLRTDVPITI--------PLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            + ARLSR LV LR DVP+           +  L + + +  R+++F  A+ F  L  R 
Sbjct: 295 EQQARLSRVLVDLRRDVPMDRMTFPQGIAKVSDLQMAEFDSNRILAFYDAMGFRDLKRRF 354

Query: 289 ATTYD 293
               +
Sbjct: 355 ENRLN 359


>gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa]
          Length = 1413

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 120/396 (30%), Positives = 210/396 (53%), Gaps = 29/396 (7%)

Query: 605  NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWKTTAQDLE 658
             L  LE+  + ++GE+F ++S  QL ++LF KLK        +  +    +  +T+  + 
Sbjct: 959  RLKELEQEAHFVAGEQFLITSNSQLREMLFGKLKLHLLHPRATLPRMGLQRPPSTSDTVL 1018

Query: 659  QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                  +P+ + ILE+RQ+ KIKST+ D L  H+ K +  V + ++   T+TGRL++  P
Sbjct: 1019 SALQDLHPLPRIILEYRQVHKIKSTFVDGLRAHMKKGS--VSSVWNQTGTVTGRLSAKRP 1076

Query: 719  NLQNI-----------PIKTDLGQKI----RRAFISPPTKKLISADYSQIELRILAHIAK 763
            N+Q I             K + G  +    R  F+SP  +  ++AD+SQIELRILAH++ 
Sbjct: 1077 NMQGISKLPIQIGAPRNAKGEAGDALTVSARSLFVSPEGRSFLAADFSQIELRILAHLSG 1136

Query: 764  ITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
               L ++F+     D+   + ++  G++ E V+   R   K + ++++YG    RLA  L
Sbjct: 1137 DPELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVVYGAGRERLAACL 1196

Query: 822  RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
             +   EAA + + +  ++  I ++ + T     Q GYVE++ GRR     I +    +R 
Sbjct: 1197 GVTLREAARFGESFLQKYKKIKDFTQATIARCHQTGYVESVMGRRRPLPRIRARDQKLRA 1256

Query: 882  INERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTA 940
              ER A+N  +QGSAAD+ + AMI +  ++     L  +++ QIHDEL+FEV + +I   
Sbjct: 1257 QAERQAVNFVVQGSAADLCKMAMIRIFAAVATSPTLTARLVAQIHDELLFEVEDSQIPEF 1316

Query: 941  SQIIVHSME---KACLPKINLRVPLKVNIKVSNNWQ 973
            + ++  +ME   +     + L+VPLKV++    +W 
Sbjct: 1317 AALVRGAMEALQEVPALGLQLQVPLKVSLSTGRSWG 1352


>gi|15606735|ref|NP_214115.1| DNA polymerase I [Aquifex aeolicus VF5]
 gi|17366200|sp|O67550|EX53_AQUAE RecName: Full=5'-3' exonuclease
 gi|2983968|gb|AAC07515.1| DNA polymerase I 3'-5' exo domain [Aquifex aeolicus VF5]
          Length = 289

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 119/288 (41%), Positives = 171/288 (59%), Gaps = 9/288 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L+++DGSSF+YR+F+A P LS    G P NAI GF  ML+ L++  R +    +  V+
Sbjct: 2   KTLYILDGSSFVYRSFFALPPLSTSK-GFPTNAIYGFLRMLFSLIKKERPQ----YLVVV 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD PA T R +IY DYK  RPK P+ L  Q+P+++   +  GIP +E+ G+EADD+IA  
Sbjct: 57  FDAPAKTKREKIYADYKKQRPKAPDPLKVQIPVIKEILKLAGIPLLELPGYEADDVIAYL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                ++GF V I S DKDL+QLVS    + + + +E    E VIKK+G+ P+K+    A
Sbjct: 117 AEKFSQKGFKVKIYSPDKDLLQLVSENVLVINPMNDEVFTKERVIKKFGVEPQKIPDYLA 176

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GD +DN+PGI G+G KTA  +L++YG++ENIL N      K +RE      E   LS 
Sbjct: 177 LVGDKVDNVPGIEGVGPKTAINILKKYGSVENILKNWE----KFQREFPRAKKEDLELSY 232

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
           KLV L TD+ I +  E L ++  +  +L   L+ LE   L+  V   +
Sbjct: 233 KLVKLYTDLDIELSEEDLKIKRPDLNKLKQKLQELEMKSLLKEVDKIF 280


>gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta]
 gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta]
          Length = 2037

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 153/594 (25%), Positives = 265/594 (44%), Gaps = 56/594 (9%)

Query: 408  AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
             ++ S  D               +++     +TG+   T   +  L K    +    + H
Sbjct: 1467 GVSFSLADNVAYY----------MNMQNDGRATGQGVPTILKVQELCKLLARKDLTLVMH 1516

Query: 468  NIKYDKLVLHR-----YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK--EI 520
            + K    +L +       IS +  ED  + +++L   R+    A + + +        +I
Sbjct: 1517 DGKEQLKMLLKAIPQLQKISAK-LEDPKVANWLLQPDRTM-SFADMCRTFAPECTALADI 1574

Query: 521  LKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKP 575
              S +  SS  +D  S    +      + V + +       L       LL  +  L+ P
Sbjct: 1575 CGSGRGYSSYGLDSASAILPKIRTSIEACVTVHILKGQTENLGRIGSGQLLKFFHDLEMP 1634

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
            +   +  ME  G    Q LL+Q+  ++   +  LE  I++  G +FNL S + +  +L  
Sbjct: 1635 LQLTLCHMEFVGFPAQQQLLQQLYQKMVAVVRKLETKIFEQHGSRFNLGSSQAVAKVLGL 1694

Query: 636  KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
              K         G+  T+ Q LE++N    PI   IL +R+L+ + +     L       
Sbjct: 1695 HRKI-------NGRVTTSRQVLEKLNT---PISHMILGYRKLAGLLAKSIQPLLKCCQAD 1744

Query: 696  TQRVHTFYSLASTMTGRLASLEPNLQNI--------PIKTDLGQKIRRAFISPPTKKLIS 747
                    S+  T TGR++  EPNLQN+                      +    + L+S
Sbjct: 1745 ---RIHGQSITYTATGRISMAEPNLQNVAKEFCIQVGSDAVNISCRLPFMLKDEDRCLLS 1801

Query: 748  ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            AD+ Q+E+RILAH+++   L +V  +S D+   +AA    +   +VS  +R   K + + 
Sbjct: 1802 ADFCQLEMRILAHLSQDKGLLKVMNSSQDLFIAIAAHWNKIEESEVSQNLRNSTKQVCYG 1861

Query: 808  IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
            I+YG+    LA  L     EA    +++   + GI EY  +   F R  G+VETI GRR 
Sbjct: 1862 IVYGMGMRSLAESLNCSEEEARLISEQFHQAYTGIREYTMRVVKFARNQGFVETITGRRR 1921

Query: 868  HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH----KLATK---M 920
            + D INS +  ++N  ER AIN+ IQGSAADI + A++ + K+LE +     L  K   +
Sbjct: 1922 YLDNINSDQEHLKNQAERQAINSTIQGSAADIAKSAILKMEKNLERYRDKLGLGDKSVDL 1981

Query: 921  LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++ +HDEL+FEVP  +    ++++  +M+      + L VPL+V +++  +W E
Sbjct: 1982 VMHLHDELIFEVPAAKSKKIAKVLSVTMQNC----VKLTVPLQVKLRIGRSWGE 2031


>gi|309805883|ref|ZP_07699917.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308167724|gb|EFO69869.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           03V1-b]
          Length = 348

 Score =  310 bits (794), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 104/325 (32%), Positives = 168/325 (51%), Gaps = 11/325 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             L L+DG+S  +RAFYA        +  +GL  NAI  F NML  LL+N +     +H 
Sbjct: 2   KKLLLIDGNSVAFRAFYALYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTHM 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD   +TFRN++Y DYK  R K P  L  QLP+++      GI + E+  +EADDI+
Sbjct: 58  LVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDIL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +    GF VTI++ D+DL QL      +  T K     E    +H+ + +G+ P+
Sbjct: 118 GTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVTKKGVNDLEIYTPKHMQEVYGVTPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++AL GD+ DN PG+  +G KTA+ L+ +YG++EN+     +IK  K +E ++   
Sbjct: 178 QFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIRDK 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297
             A L +KL  +    P+ + ++ + L+     +L SF + L F K ++ +    + D  
Sbjct: 238 NNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEIDNK 297

Query: 298 NIEPVVLDINTTENKGIAIETEIDR 322
             +    +I   +N      T+ D 
Sbjct: 298 VQDECHYEILDKDNLSEIFATDFDH 322


>gi|326426432|gb|EGD72002.1| hypothetical protein PTSG_00018 [Salpingoeca sp. ATCC 50818]
          Length = 830

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 145/744 (19%), Positives = 289/744 (38%), Gaps = 76/744 (10%)

Query: 282 TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
           ++    +   +D +                   A +  + +D        S     ++  
Sbjct: 110 SRFREELQHAHDGELWQSPSFASFAPNAPPTTSAAKLHVHQDLGSSFVSMSPAHAGSATS 169

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
                P+   L    +  Q         +          + K +        ++T  +  
Sbjct: 170 AHPPQPEHRKLGGSTRQRQPGAQEQQRAQQHAESSRSSTLAKQQQHKQHLPDVLTSRVSV 229

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETI------FIDLSVHTSQDSTGKNTLTKEILSYLKK 455
           F       ++   D +      ++           + V  S     ++      L   ++
Sbjct: 230 FD----GASLGVQDHEHTLFLVIQPQSSGDEEQDGIVVELSVRMQDQSPNNSFALQAFQQ 285

Query: 456 FFENEHFLKIGHNIKYDKLVL------------HRYGISMRGFEDIMLMSYVLDSGRSSH 503
              +   +   H  +    +L                I++R   D  + +++ D  R+  
Sbjct: 286 CLASARVI-YTHGGRRMAALLLQCCSSAIVGRGANESIAVR---DTQVAAWLADPERAWD 341

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           D+  + +  L   R     +          S   + + A  ++      +  L  +L   
Sbjct: 342 DMDDVFR--LCQLRPVTRGAGDLGDSSASASSQWLHKLASRHAAA----FDHLFARLRAC 395

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
               +Y RL+ P I ++++M++ GI ID + LKQ   +I + L  LE     L G K  L
Sbjct: 396 DQAELYSRLEAPAIWLLAEMQVHGIHIDTETLKQQRVQIQQCLAELEARAEALVGFKLLL 455

Query: 624 SSPKQLGDILFTKL----KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +SP QL + L+ +L      P+  +T  G+   T +D   +    + +   +L  R+ ++
Sbjct: 456 TSPLQLREYLYDQLQLHVGIPNFPRTPKGKLS-TGEDALTLIKDRHELPNLLLLHRRAAR 514

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD------LGQKI 733
           +  TY D +  H+      +H  +   S  +GR++  +PN+Q++P++        L    
Sbjct: 515 LLCTYIDGVLPHVTHGM--LHPEWLQTSAASGRVSCQQPNIQSVPLRETALRLDLLVVSP 572

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL------------------ 775
           R A+++P     +S D+ Q+ELR+LAH ++   L  +F+N                    
Sbjct: 573 RAAYVAPGGCVYVSLDWRQMELRLLAHFSEDEGLIALFQNQEAKAKANTPPSTANATSRE 632

Query: 776 -----DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                D  + +A++ F V +E+V+ + R   K   ++ IYG     L+  L +   EA  
Sbjct: 633 EGGTSDPFKALASKWFCVPVEQVTGRQRDQVKRCLYAFIYGSGALHLSKVLEVSVHEAKK 692

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            ++ +  R P I    ++    +++ G+V  +  RR ++      K S  + ++RAA N 
Sbjct: 693 LLQAFRRRHPRIQHLRDQVLIRLKETGFVSCLSRRRRYF------KDSANDHSQRAAFNF 746

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            +QGSAADI + AMI++ + L   ++ + M+ Q+HDE++ E PE+E              
Sbjct: 747 LLQGSAADICKAAMINLREFLRAKQMRSFMVAQLHDEIILECPEKEAKEVLAFTRG--PA 804

Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974
            C P   +RVP  V  ++   W +
Sbjct: 805 FCEPFGRMRVPFPVRQRIGRTWAD 828


>gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera]
          Length = 2091

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 147/664 (22%), Positives = 271/664 (40%), Gaps = 92/664 (13%)

Query: 377  IQQWVQKLETIGSASFKI------ITDTMDAFHSKPIAIAISTLDQKDDT---------S 421
               ++   +++    F I        +++  +  +   IAI   +              S
Sbjct: 1390 FDSFLDLWDSVREFYFDIHFNKQSEVNSLAPY--EIHGIAICWENSPVYYINLPKDLLCS 1447

Query: 422  FKVETIFIDLSVHTSQ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             + + I++ ++V   +    D+  +    K   S + K    +   K   N+K    VL 
Sbjct: 1448 DERKNIYLTMNVSDDKPNILDANHRLEAAKWRWSKVGKIMGKKDVRKFTWNLKVQIQVLK 1507

Query: 478  RYGISMRGFE------------------------------DIMLMSYVLDSGRSSHDIAS 507
               +S++ F                               D+ +++++L          +
Sbjct: 1508 NPAVSIQKFGSLNLAMRTMGLELIDNSYLMLSPVYIVDGLDMCIVTWILWPDEERSSNPN 1567

Query: 508  IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            + ++       E   +   S      +                 L  +L   L+ E+L+ 
Sbjct: 1568 LEKEVRKRLSSEAAAAANRSGRWKNQTRRAAHNGCCRRVAQTRALCSVLWKLLVSEELVE 1627

Query: 568  VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
            V  R++ P++ +++ ME+ GI +D +   Q    + K L  LE+  Y+L+G  F+L +  
Sbjct: 1628 VLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEKEAYELAGMTFSLYTAA 1687

Query: 628  QLGDILFTKLKFPSGAKTKTGQWKT-TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
             + ++L+  LK P       G+    T +    +   ++PII  I E R L+K+ +    
Sbjct: 1688 DIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIIPVIKEHRTLAKLLNCTLG 1747

Query: 687  SLPNH----INKRTQRVHTFYSLASTMTGRLASLEPNLQNI----------------PIK 726
            S+ +     +  +   +H  +   ST TGRL+  EPNLQ +                  +
Sbjct: 1748 SICSLARLSLQTQRYTLHGHWLQTSTATGRLSMEEPNLQCVEHVVEFKMIKGNKDVCNSE 1807

Query: 727  TDLGQKIRRAFISP--PTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAA 783
             D  +   R F  P      L++ADYSQIELR++AH ++ + L ++      D+  M+AA
Sbjct: 1808 ADHYKINARDFFVPSQENWLLLTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAA 1867

Query: 784  EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            +  G     V  Q R   K + + I+YG+    LA QL     EA + I+ +   FPG+ 
Sbjct: 1868 KWTGKPESVVGYQEREQTKRLVYGILYGMGANTLAKQLECSLGEAEEKIRSFRSSFPGVA 1927

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             ++ +      + GYV+T+ GR+    +I    S  +    R A+N+  QGSAADI + A
Sbjct: 1928 SWLHEAVACCCKKGYVKTLKGRKRFLSKIKFGTSKEKLKARRQAVNSICQGSAADIIKIA 1987

Query: 904  MISVHKSLEDH-----------------KLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            MI++H  + +                  K   +++LQ+HDELV EV    +  A  ++  
Sbjct: 1988 MINIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKM 2047

Query: 947  SMEK 950
            +ME 
Sbjct: 2048 TMEN 2051


>gi|225430047|ref|XP_002281624.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2100

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 146/669 (21%), Positives = 271/669 (40%), Gaps = 99/669 (14%)

Query: 377  IQQWVQKLETIGSASFKI------ITDTMDAFHSKPIAIAISTLDQKDDT---------S 421
               ++   +++    F I        +++  +  +   IAI   +              S
Sbjct: 1438 FDSFLDLWDSVREFYFDIHFNKQSEVNSLAPY--EIHGIAICWENSPVYYINLPKDLLCS 1495

Query: 422  FKVETIFIDLSVHTSQ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
             + + I++ ++V   +    D+  +    K   S + K    +   K   N+K    VL 
Sbjct: 1496 DERKNIYLTMNVSDDKPNILDANHRLEAAKWRWSKVGKIMGKKDVRKFTWNLKVQIQVLK 1555

Query: 478  RYGISMRGFE------------------------------DIMLMSYVLDSGRSSHDIAS 507
               +S++ F                               D+ +++++L          +
Sbjct: 1556 NPAVSIQKFGSLNLAMRTMGLELIDNSYLMLSPVYIVDGLDMCIVTWILWPDEERSSNPN 1615

Query: 508  IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            + ++       E   +   S      +                 L  +L   L+ E+L+ 
Sbjct: 1616 LEKEVRKRLSSEAAAAANRSGRWKNQTRRAAHNGCCRRVAQTRALCSVLWKLLVSEELVE 1675

Query: 568  VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
            V  R++ P++ +++ ME+ GI +D +   Q    + K L  LE+  Y+L+G  F+L +  
Sbjct: 1676 VLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEKEAYELAGMTFSLYTAA 1735

Query: 628  QLGDILFTKLKFPSGAKTKTGQWKT-TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
             + ++L+  LK P       G+    T +    +   ++PII  I E R L+K+ +    
Sbjct: 1736 DIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIIPVIKEHRTLAKLLNCTLG 1795

Query: 687  SLPNH----INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
            S+ +     +  +   +H  +   ST TGRL+  EPNLQ                     
Sbjct: 1796 SICSLARLSLQTQRYTLHGHWLQTSTATGRLSMEEPNLQ-------------------EN 1836

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L++ADYSQIELR++AH ++ + L ++      D+  M+AA+  G     V  Q R   
Sbjct: 1837 WLLLTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQT 1896

Query: 802  KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
            K + + I+YG+    LA QL     EA + I+ +   FPG+  ++ +      + GYV+T
Sbjct: 1897 KRLVYGILYGMGANTLAKQLECSLGEAEEKIRSFRSSFPGVASWLHEAVACCCKKGYVKT 1956

Query: 862  IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH------- 914
            + GR+    +I    S  +    R A+N+  QGSAADI + AMI++H  + +        
Sbjct: 1957 LKGRKRFLSKIKFGTSKEKLKARRQAVNSICQGSAADIIKIAMINIHSVIAEGVDEPNSS 2016

Query: 915  ----------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
                      K   +++LQ+HDELV EV    +  A  ++  +ME +    + +      
Sbjct: 2017 TELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMTMENSTS-LLGMSF---- 2071

Query: 965  NIKVSNNWQ 973
             +KV   W 
Sbjct: 2072 -LKVGRTWG 2079


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 137/548 (25%), Positives = 244/548 (44%), Gaps = 52/548 (9%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           + +LK    ++    +GHN+KYD   L+RYGI      D M+ S +L      H +  +A
Sbjct: 60  VDFLKDLLVDKGI--VGHNLKYDLKFLYRYGIEPYAVFDTMIASQLLGELD-RHSLQKVA 116

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-----IVEK 564
             +L    + + KS + S     +   +  E+A  +  ++  L+ +L  KL       E 
Sbjct: 117 MHYLG---EVLDKSLQMSNWGRAVLSKEQLEYAALDVKMVRDLYSILLDKLNSTAHQEET 173

Query: 565 LLHV-----------YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
           LL                ++   +  V+++E+ GI +D   L+ +  E  KNL       
Sbjct: 174 LLKTRTSRVFGLKNPVAIIEMAFVQEVAKLELNGIGVDIKELEDLIREYKKNLNKKVMEF 233

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
             +   + +  SPKQLG++L  +L      KT+ G   T  + L Q     +  ++ ILE
Sbjct: 234 --MMHYRIDPLSPKQLGELLSKRLGLDLP-KTEKGNISTDDKILSQFI--HHKPVQMILE 288

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
            R   K+     D + + +   +  V+  +     +TGR++SL PN+QNIP        +
Sbjct: 289 IRMTKKLLDKL-DEIRSFVKDGS--VYPEFKQIGAITGRMSSLNPNVQNIPRD------L 339

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R  F +   K L+ +D+SQIELRI +       + + F    D+HR  A+ + G   E +
Sbjct: 340 RGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGKDLHRYTASVLLGKKEEDI 399

Query: 794 SPQMRRHAKTINFSIIYGISPFRL-----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
           S + R+ AK +NF +IYGIS   L     +  + +   +A     R+F  F    E+ E+
Sbjct: 400 SKEERQLAKAVNFGLIYGISARGLSDYAKSYGIDLSVDDAQKIRDRFFEYFRSFKEWHER 459

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
            K  ++Q G           Y     P +          +N PIQG+ AD+ + +++   
Sbjct: 460 VKRELKQLGGSRGYTLLGRSYVAHTFPDA----------VNYPIQGTGADLLKLSVLMFD 509

Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
             ++  K+   ++  +HDE+V E   E+      ++  +M+ A    +  +VP++V   +
Sbjct: 510 AEIKREKIEAHVVNLVHDEIVVECQMEKAQLVRDLLERAMKHAGRVVLK-QVPVEVESTI 568

Query: 969 SNNWQEEN 976
           +  W +E 
Sbjct: 569 NERWLKEG 576


>gi|281207443|gb|EFA81626.1| DNA polymerase theta short isoform [Polysphondylium pallidum PN500]
          Length = 1192

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 143/624 (22%), Positives = 264/624 (42%), Gaps = 85/624 (13%)

Query: 423  KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                ++      +   +  K +   +    +K+  E  +  K   N K    +L   GIS
Sbjct: 561  PGLAVYQLPLAPSGGVADFKQSFYNDNWKLVKQVLEYPYSYKHIWNSKPQLKILLSKGIS 620

Query: 483  MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI-SDSQVQE 540
            ++    D  +  ++ DS            K L Y   +  K  K  I   K  + S++  
Sbjct: 621  LKHRLIDPKIALWLTDSDLHK-------DKKLEYVYMDNAKGSKKMIGATKFHNISKLAT 673

Query: 541  H---------AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
                      A +     L L   L  +L     L +   ++ P+  ++++ME  GI  D
Sbjct: 674  RSGSTNHFDLAYQACYQTLILSQRLLKQLD-PSSLKILFEIEMPVTPILARMEFIGIGFD 732

Query: 592  QDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGA----KTK 646
             ++ +     + K +  L    + L    K ++ S  Q+ D+++  LK         K  
Sbjct: 733  DEICQNTRELVQKKIDYLIYKAHLLVPRLKLDMESKIQMSDVMYNWLKLTKPDSRTNKKV 792

Query: 647  TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT---QRVHTFY 703
              +  +T     +    ++P    ++E+R+LS   + YAD L  +  + T    R+++  
Sbjct: 793  LKESYSTNAHHLETISHEHPFPNILMEYRKLSHHINNYADELRKYCYRSTDNSMRIYSTI 852

Query: 704  SLASTMTGRLASLEPNLQNIPIKTD----------------------------------- 728
                  TGRLA + PNLQ+I    +                                   
Sbjct: 853  LQTIVPTGRLAMVFPNLQSIAHPIEFKVAPTFTPSPLSIASNSSDIEIPAVDLENHSSQY 912

Query: 729  ------------LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SL 775
                        L  KIR +F+       +SADYSQIELRILAH ++   L ++F N ++
Sbjct: 913  NNLVAMESKCETLSIKIRDSFLPKQGYIFLSADYSQIELRILAHFSQDPKLLEIFNNSTV 972

Query: 776  DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
            D+ ++++ ++  + +E++    R  AK + + I+YG+   +LA  L   + +A   + R+
Sbjct: 973  DVFKLISHQMSKIPLEQIKDSDRTIAKHLCYGILYGMGIGKLAHDLNTTKDKAKAALLRF 1032

Query: 836  FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS------IRNINERAAIN 889
               +  + +Y+    +   +NG+VET FGR+ ++ E+            ++   +R A N
Sbjct: 1033 KTTYQVLTDYLTSVGDSCLKNGFVETFFGRKRYFREVFEVYKDTKVTNEVKESAKRKAKN 1092

Query: 890  APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
               QG+AADI++ AMI V K L +  +  +++LQ+HDEL+ EVPE ++   + I+  SME
Sbjct: 1093 TIPQGTAADISKLAMIQVDKKLNERGIPAEIVLQVHDELLLEVPESQLAEVALIVKESME 1152

Query: 950  KACLPKINLRVPLKVNIKVSNNWQ 973
             A      L +P+ + + +   W 
Sbjct: 1153 SAA----KLSIPIPIKMSIGKCWG 1172


>gi|224003183|ref|XP_002291263.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
 gi|220973039|gb|EED91370.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
          Length = 500

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 152/461 (32%), Positives = 251/461 (54%), Gaps = 27/461 (5%)

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            +Q    AI N   +  L+ L+  +LI   LL   E ++ P+  +++ ME  G+    + 
Sbjct: 38  IAQGLSDAINNLAFLNALYPLMNRQLIDRDLLPSLENIEAPVQSILAAMECRGVAFYPNH 97

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFT--KLKFPSGAKTKTGQWK 651
           LK+  A+ ++ + +LE     ++ +  F LSSP+Q+ + L+   K+K PSG   KT   +
Sbjct: 98  LKRNEAQANERIEALEAQARTITNDSSFLLSSPQQISNYLYDILKMKVPSGLVQKTKSQR 157

Query: 652 TTAQDLEQI-----NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +T+++  Q      N   +PII  ILE+R L+K+ +TY   LP     +  R+H  +S  
Sbjct: 158 STSEETLQALKAASNGSPHPIIDVILEFRTLNKLLTTYIKPLPTFCLPQ--RIHPQWSEC 215

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP--PTKKLISADYSQIELRILAHIAKI 764
           +  TGRL+  +PNLQ +P   D G  +RR+F+     T  L + DYSQ E+RILAH++  
Sbjct: 216 AVRTGRLSCRQPNLQQVPK--DDGASVRRSFVPSKKETMCLFACDYSQKEVRILAHMSGD 273

Query: 765 TPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
             L  +F+     DI++ +++ I    +E ++ Q R   K +  +++YG+SP ++A +L 
Sbjct: 274 KALISLFQMDANVDIYKQMSSLIRNKPVESITAQERAQFKQVTLALLYGMSPNQVAKKLN 333

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I +S+A   +  +F RF G+  ++E TK F R+N YV TI GRR + D I+S  +  +  
Sbjct: 334 ITKSQAIQMMNDFFRRFQGVKNWMEDTKEFARRNHYVVTIAGRRRYLDGIDSDDNGAKAQ 393

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLED---------HKLATKMLLQIHDELVFEVP 933
            ER AIN  IQGSAAD+ + +MI++ ++L+               ++LLQIHDELV E+ 
Sbjct: 394 AERQAINTVIQGSAADLMKCSMINIAENLQRWQEDNSSNGTSSRPRILLQIHDELVLELN 453

Query: 934 --EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             E +I     I   S+ + C    +L+VPL +      +W
Sbjct: 454 FVETDIRRLQAIATKSLTRDCEEYFHLKVPLLLTCSCGMSW 494


>gi|307106974|gb|EFN55218.1| hypothetical protein CHLNCDRAFT_52598 [Chlorella variabilis]
          Length = 2117

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 151/634 (23%), Positives = 255/634 (40%), Gaps = 137/634 (21%)

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR--------------YGISMR---GFEDI 489
             ++L+ L+  F +    K   +++     L +               G  +       D+
Sbjct: 1507 DDLLAELRPLFWSAAVEKATWDLRGQLAALAKVLGPGALGVPGDQAAGCPLALRDPLVDV 1566

Query: 490  MLMSYVLDSG------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
             + +++           SSH + S   +   YT  ++LK R       + +       A 
Sbjct: 1567 RVAAWLGTPDDGRLKDESSHSVGS--GRKEPYTLSDMLKIRGGQAVWAEATQGMQASTAA 1624

Query: 544  E---------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                       +    ++W LLR +L  ++LL    R + P+  ++              
Sbjct: 1625 SGARRADAGRRAAQARKMWQLLRSRLRGDELLPPLWRTEMPLEPML-------------- 1670

Query: 595  LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK---TGQWK 651
                     + +  LE   +  +G++F+LSSP+++  ILF  LK       K   +G + 
Sbjct: 1671 --------QRRIEELEGMAHAEAGQEFSLSSPQEVSRILFEVLKLAPPPCAKDLKSGGYS 1722

Query: 652  TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS--LPNHINKRTQ------------ 697
            T  + L ++   ++PI + I E R+L  + +       LP     +              
Sbjct: 1723 TGQEVLLEL--HEHPIARLIFEHRKLRTLLNRQGGPGLLPFVQGFKMHLAYAEAVSYPGG 1780

Query: 698  ----RVHTFYSLASTMTGRLASLEPNLQNIPIK----------------------TDLGQ 731
                R+    +     T RLA  EPNLQ +P                         D   
Sbjct: 1781 LVLKRIRGSINQ----TCRLAMDEPNLQCVPKPRAYKVLLTPGELGSAASGASAHADRTA 1836

Query: 732  KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF-ENSLDIHRMVAAEIFGVNI 790
             +R AF++PP   L+SADY QIE R++AH +    L +VF E+  D  R++AA+  G   
Sbjct: 1837 NLRAAFVAPPGCVLLSADYRQIEFRLMAHFSGDPGLARVFSEDGADPFRLLAAQWLGAPQ 1896

Query: 791  EK-------------VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
            E+             V+ Q R HAK + + ++YG+   +LA +L    +EA    +++  
Sbjct: 1897 EQARPRGWLGRGRRGVTQQQRDHAKQLTYGLLYGMGAAKLADELGCSVAEARTAQEKFRA 1956

Query: 838  RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
              PGI  +  +     R+ GYVET+ GRR +   IN      R   ER A N   QGSAA
Sbjct: 1957 SMPGIEAWQARVVAECRRLGYVETLAGRRRYLPNINCRDGRKRAAAERQAKNTVCQGSAA 2016

Query: 898  DITRRAMISVHKSLED-----------------HKLATKMLLQIHDELVFEVPEEEITTA 940
            D+ + AM+++H  L                      A +++LQIHDE + EV E  +   
Sbjct: 2017 DLAKAAMVAIHTRLAAWLALGSGGNCGCGGGPGGGPAARLVLQIHDEFLLEVAEPLLEPV 2076

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++++   ME      + LRVPL+V +    +W E
Sbjct: 2077 ARLVRDCMEGLASG-VRLRVPLRVRLAAGPSWGE 2109


>gi|145629928|ref|ZP_01785710.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144984209|gb|EDJ91632.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 255

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 102/251 (40%), Positives = 141/251 (56%), Gaps = 11/251 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L LVDGSS++YRAF+A P L+    G P  A+ G  NML  L+   +     SH AV+
Sbjct: 7   NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+E++  YK++RP +P+ L  Q+  +    +A GIP + ++G EADD+I T 
Sbjct: 62  FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              A + G  V I + DKD+ QLV     L +T+    +D E VI+K+GIPPE ++   A
Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAE 238
           L GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++        KK  E +L    
Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241

Query: 239 TARLSRKLVML 249
            A LS  L   
Sbjct: 242 NADLSYTLATT 252


>gi|255024133|ref|ZP_05296119.1| DNA polymerase I [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 108/237 (45%), Positives = 147/237 (62%), Gaps = 4/237 (1%)

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           S P  K+ SADYSQ+ELR+LAHI++   L   F++  DIH   A ++F V  ++V   MR
Sbjct: 7   SKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMR 66

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           R AK +NF I+YGIS + L+  L I R EA D+I RYF  +P + EY++    F ++ GY
Sbjct: 67  RQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGY 126

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           VETI  RR +  EI S   ++R   ER A+N PIQGSAADI ++AMI + + L   KL  
Sbjct: 127 VETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEA 186

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           K+LLQ+HDEL+FE PE EI    +I+   ME A    + L VPLKV+    + W + 
Sbjct: 187 KLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTWYDA 239


>gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
 gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
          Length = 745

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 162/716 (22%), Positives = 272/716 (37%), Gaps = 141/716 (19%)

Query: 393 KIITDTMDAFHSKPIAIA----ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
                 +D     P+       IS    +D      +     L +    D+       K+
Sbjct: 37  DTEVMDIDLKEVGPVGHGYVTCISVYSGEDFDYGLGDGPGTMLWIDNLDDA-------KD 89

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507
           +L   K + E+   +K+ HN  +D+ VL   GI++ GF  D M M+ + D+ R  + + S
Sbjct: 90  LLQEFKPWLEDAKVMKVWHNYGFDRHVLFNEGINVLGFGGDTMHMARLSDTSRMKYSLES 149

Query: 508 IAQKWLS---YTRKEILK-----SRKSSIPIDKISDSQVQE-----------HAIENSNV 548
           + +  L       KEI          +   I  I   +V +           ++  ++  
Sbjct: 150 LTEDLLKQRKVPMKEIFGVPRLRKDGTDGAIVDIPPVEVMQRDPKFRESWIKYSAMDAKS 209

Query: 549 ILQLWLLLRPKLIV------EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK----QV 598
              L+  L+ +L+         ++  Y+   +P  ++++ +E  G+ + +D L     Q 
Sbjct: 210 TYNLYQHLKKELLKVGWIRQMNMMQYYQLHMRPFGELLTDLERRGMLVAKDYLADVEVQA 269

Query: 599 SAEISKNLLSLEENIYDLSGEKF---NLSSPKQLGDILFTK------------------- 636
             +   ++ +  +  +   G      NL+S  QL   LF                     
Sbjct: 270 RKDREGHVEAFRQWAFKQLGPDGLAMNLASSVQLTTFLFGGAENAKTKEPTEKVRVFKTA 329

Query: 637 ----------------------------LKFPSGAKTKTGQWKTTAQDLEQIN------- 661
                                       L       T +G    TA  L ++        
Sbjct: 330 REDIPDDAMEAYPKNEQEPKYVDVTVRSLGMTPDKFTVSGAPSATADVLRKLAGDPFADP 389

Query: 662 -------------CGDNPIIKNILEWRQLSKIKSTYADSL--PNHINKRTQRVHTFYSLA 706
                           +           +  I +  A+ L     +     RVH   ++ 
Sbjct: 390 PKYGAAYEFFGGGEAGHEACVAFFSLTAIGSIDTMIANFLTSLQTLADDQNRVHCSLNI- 448

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           +T TGRL+S +PN+QN P       KIR+AF++ P   LI ADY Q+ELR+LA +   T 
Sbjct: 449 NTETGRLSSRKPNMQNQPALEKDKYKIRQAFMASPGNNLIVADYGQLELRLLASMTDCTS 508

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVS------------------------PQMRRHAK 802
           +   FE   D H   A  +F    + V+                           RR AK
Sbjct: 509 MIDAFEAGGDFHSRTALGMFKYIQDAVANGDVLLEWDYSKGEPPKPMLKDQYASERRKAK 568

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           T+NFSI YG +   L+    +   EA + ++ ++   P + ++ + TK   R  G   T+
Sbjct: 569 TLNFSIAYGKTAHGLSQDWGVSLKEAEEMLRAWYDSRPEVEKWQQNTKKAARNYGITRTL 628

Query: 863 FGRRIHYDEINSPKSSIR-NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
            GR  H        +  R    ERA+IN PIQG AAD+   AMI ++ SL   KL   +L
Sbjct: 629 MGRYRHLPHAMEGNNRKRLGHAERASINTPIQGGAADVAMMAMIKINDSLLLKKLGWILL 688

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-NLRVPLKVNIKV-SNNWQEE 975
           +Q+HDE++ E PEE    A + +V  M++  +  +   +VPL V+     NNW + 
Sbjct: 689 MQVHDEVILEGPEETAEEAFEEVVKCMQEPWVLGLDKTKVPLLVDGSFKHNNWYDA 744


>gi|218186696|gb|EEC69123.1| hypothetical protein OsI_38041 [Oryza sativa Indica Group]
          Length = 1986

 Score =  305 bits (780), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 142/608 (23%), Positives = 249/608 (40%), Gaps = 64/608 (10%)

Query: 377  IQQWVQKLETIGSASFKI------ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
               ++ +  T+   SF +      I  +   F    + +A+      +++         D
Sbjct: 1375 FDSFLDQWSTVSEFSFDLHYVKKSIKSSSTYF--DILGLAVCW----ENSPVYYCNFPKD 1428

Query: 431  LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490
            L +  S DS           + + +        K+  N+K+    L              
Sbjct: 1429 LMMAGSNDSIEMWDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALK-----YPCVSCQR 1483

Query: 491  LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
            L    LD  +   ++  +   ++      +       + +  +     +   + N     
Sbjct: 1484 LSRLHLD-YKMLKNVEVLDNLYVFLQPVSVHSGLDICL-VAWVLWPDEESKTVPNLEKTR 1541

Query: 551  QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
             L  +LR  L+ + L  + E ++ P+++V++ ME+ GI  D D   +    I + L  LE
Sbjct: 1542 ALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELE 1601

Query: 611  ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT-TAQDLEQINCGDNPIIK 669
            +  Y L+G+ F+L++   + D+L+T LK P       G+    T +         +PII 
Sbjct: 1602 KEAYKLAGKSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLRDQHPIIS 1661

Query: 670  NILEWRQLSKIKSTYADSL----PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
             I E R L+K+ +    S+          +   +   +   ST TGRL+  EPNLQ    
Sbjct: 1662 VIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQ---- 1717

Query: 726  KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAE 784
                               L++ADYSQIELR++AH +K T L ++      D+  M+A+ 
Sbjct: 1718 ---------------ENWLLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASR 1762

Query: 785  IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
              G     +  + R   K   + I+YG+    LA QL     +AA  I+ +   FPG+  
Sbjct: 1763 WTGKAESLICSKERETTKRFIYGILYGMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSS 1822

Query: 845  YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            ++ +     R  GYVET+ GRR    +I +  S  +   +R A+N+  QGSAADI + AM
Sbjct: 1823 WLHEAVASCRHKGYVETLMGRRRFLSKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAM 1882

Query: 905  ISVHKSLE--------------------DHKLATKMLLQIHDELVFEVPEEEITTASQII 944
            I VH ++                     + +    ++LQ+HDELV EV    +  A +++
Sbjct: 1883 IKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLL 1942

Query: 945  VHSMEKAC 952
               ME + 
Sbjct: 1943 QTVMENSA 1950


>gi|312074456|ref|XP_003139979.1| hypothetical protein LOAG_04394 [Loa loa]
 gi|307764861|gb|EFO24095.1| hypothetical protein LOAG_04394 [Loa loa]
          Length = 1001

 Score =  304 bits (778), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 154/636 (24%), Positives = 277/636 (43%), Gaps = 59/636 (9%)

Query: 355 LQKLSQYPINNDSYTKIV---NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           ++  +        +  I    +    +Q + + +             +  ++   I IA+
Sbjct: 399 IEHFNSNQTRTAEFQIIDVCGSRIAWEQLLVRQKYWNQIGL-----GIAIYNRDIIGIAL 453

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
             L+++         ++ID   +   +         E +  L     +E    I   + +
Sbjct: 454 CALNEE--------CVYIDFRPNRISE-----IEIYERIETLDNILRSEQQKYIYDLVSF 500

Query: 472 DKLV-----------LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
            + +           L  + I ++      L  Y    G S+     +  +  S  R  I
Sbjct: 501 SRSLRYLRGTTYPPSLFNHCICIQTLS--YLAHYRASDGNSAISFQDLVSQLTSPERAII 558

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL-LLRPKLIVEKLLHVYERLDKPMIDV 579
           L++  S +             A  ++ + L +   LL   + +  +  V   L+   + +
Sbjct: 559 LRNATSRLQ------------AAISAFICLHMHDDLLSAAIRLSSMKSV--ELELQSVVL 604

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
            S++E  GI  D +  + + +++ + L  +E   YD+SG  FN  S  ++  ILF +L+ 
Sbjct: 605 FSEIETMGIAFDTNKAEILHSKLKQKLTDIEAKAYDISGIPFNFGSAAEISQILFVRLQI 664

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           P      TG+  +T + + Q    + PII  ILEWR++S   +T   SL         R+
Sbjct: 665 PPPN-LSTGRHYSTNKFVLQQLAPNYPIINLILEWRRISTALTTSLPSLLKSCCSDG-RI 722

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTD-LGQKIRRAFISPPTKKLISADYSQIELRIL 758
            T +   S  TGR+ +  PN+QN+       G  IR  FI+P  + L+S+DY Q+E+R+L
Sbjct: 723 RTNFITYSC-TGRVLTENPNVQNVQKDGIIDGFSIRSLFIAPKGRILLSSDYRQLEMRML 781

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           AH++  + L  +F    D   ++  +    N        R   K + + IIYG+    L+
Sbjct: 782 AHLSADSQLISLFLAEGDFFEIITNKW-NTNETLPVKVDRNKVKQLCYGIIYGMGSLSLS 840

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
            +L I +  A   I  +F +FP +  +++K     R +G+V T+ GRR    +INS   +
Sbjct: 841 KELGIQKQHAQQMIISFFQQFPKVRTWMDKILAVCRADGFVSTLLGRRRFLPQINSMLQT 900

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
                ER AIN  IQGS A++ + A++++ K+L      + +++Q+HDE++ E  E  + 
Sbjct: 901 ESAQAERQAINTCIQGSVAELFKMALLNLQKNL--LGTNSSIVMQMHDEVLVETDESSVA 958

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +  +II HSM        NLRVPL V I    NW E
Sbjct: 959 SVVEIIKHSMTSVMP---NLRVPLAVKISSGKNWGE 991


>gi|157111398|ref|XP_001651546.1| DNA polymerase theta [Aedes aegypti]
 gi|108878374|gb|EAT42599.1| DNA polymerase theta [Aedes aegypti]
          Length = 1987

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 131/556 (23%), Positives = 251/556 (45%), Gaps = 50/556 (8%)

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGI------SMRGFEDIMLMSYVLDSGRSSHD 504
            S L +  E E+     ++ K    V++R G+       +    D  +  ++L +      
Sbjct: 1444 SMLGRLLERENVTVDMYDAKEQLKVIYRSGLLSLEQEVIASLRDPKVACWLLQAEEKVIP 1503

Query: 505  IASIAQKWL----------SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
            + ++ Q++                    S      ID      V+   +  +++I     
Sbjct: 1504 LQAMVQQYCPELTTLCQMAGRCPGSTGPSSNYMSTIDAKIRCTVESFLV--THLIRAQIT 1561

Query: 555  LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
                    +++L  + + + P+   +++ME+ G   D + L  +   +      + E + 
Sbjct: 1562 QFDQLDRTQEMLPTFVQREMPIHGALARMELVGFPADANKLAHLIERLKVAQERISERVR 1621

Query: 615  DL-SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
             L  G + N +S  ++   L          + + G+ KT  Q LE+I   D+P+   ++ 
Sbjct: 1622 TLNGGRRLNFASTSEVAAAL-------KVPRERNGRVKTCRQVLEKI---DSPLATLVIA 1671

Query: 674  WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI--PIKTDLGQ 731
            +R++    S   + L   I    +R++   S   T TGR++  EPNLQ +    K ++  
Sbjct: 1672 YRKIESNLSRTIEPLYRAIR-DGKRIYG-NSYCFTSTGRISMHEPNLQTVVKDFKVEIDP 1729

Query: 732  KIRRAF-------ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                 F        S P + L+SAD+ Q+EL +L H+++   L  V     D+ R +AA+
Sbjct: 1730 GHVEVFSCRSTFACSSPDRILLSADFCQLELCVLTHLSQDRKLLAVMNGGKDVFRGIAAK 1789

Query: 785  IFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
               +  E  VS ++R + K I + +IYG+    +A +L +    A   ++++   +P I 
Sbjct: 1790 WNRIEDEALVSDELRNYTKAIVYGVIYGMGAKSMAAELNVDEDMACTLMEQFHSTYPEIR 1849

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
             Y +K     R+ GY+ET+ GRR +   I+S     R+  ER A+   +QGSAADI + A
Sbjct: 1850 RYADKVIQVTRERGYIETLTGRRRYLPAIHSTDMKKRSEAERQAVCTTVQGSAADILKNA 1909

Query: 904  MISVHKSLEDHK-----LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            ++ + ++L  ++        +++L +HDEL+FEVP ++    ++I+  SME        L
Sbjct: 1910 ILRMMRNLRKYRQTLRLGQVELVLHMHDELIFEVPRDQSRKVAKILKSSMENCA----KL 1965

Query: 959  RVPLKVNIKVSNNWQE 974
             +PL+V +K+  +W E
Sbjct: 1966 SLPLRVKVKMGASWGE 1981


>gi|224050209|ref|XP_002195724.1| PREDICTED: similar to polymerase (DNA directed) nu [Taeniopygia
           guttata]
          Length = 631

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 135/492 (27%), Positives = 240/492 (48%), Gaps = 37/492 (7%)

Query: 461 HFLKIGHNIK-YDKLVLHRYG--ISMRGFE-----DIMLMSYVLDSGRSSHDIASIAQKW 512
               I  N K + + +L  YG  IS +        D  + +++++   +      + QK+
Sbjct: 134 KVPIICFNAKDFLRTLLQIYGNEISWKQVANSVVLDPRIAAWLINPSDTVPSFECLIQKY 193

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
                K   K  +++        +   ++   N   +  + + L   L  + L +++  L
Sbjct: 194 F---EKPFSKGAENTDT--DTLRNISYQNLGVNLEKLYNVMMDLAHGLKAQGLWNLFCTL 248

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+I +++ ME   I +D+  LK+ S  +   L  LE   ++++GE+F L+S  QL ++
Sbjct: 249 ELPLIKILAVMETHKIYVDKQELKKTSEILGLRLKELEREAHEVAGERFLLTSSCQLREV 308

Query: 633 LFTKLKF----PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LF KLK         +T+  Q  +T++ +       +P+ K ILE+RQ+ K+KSTY D L
Sbjct: 309 LFDKLKLHTLCEKLQRTEIQQLVSTSEVVLNKLQDLHPLPKIILEYRQVHKMKSTYVDGL 368

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-----------IKTDLGQKI---- 733
              + K    + + ++   T+TGRL++  PN+Q I            IK      I    
Sbjct: 369 RTCMKKG--FISSTWNQTGTVTGRLSAKHPNIQGISKHPVTIAKKQYIKGKEEDIITISP 426

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
           R  F+S      ++AD+S IELRILA ++    L ++F+     DI   +A++  G+  E
Sbjct: 427 RTLFVSKKGCTFLAADFSHIELRILADLSSEPELLKLFQEPEITDIFATLASQWKGIPSE 486

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V    R  AK I +S++YG    RLA  L I   +A+ +I+ +  ++  +HE+ +KT  
Sbjct: 487 QVKHADREQAKRIVYSVVYGAGKERLADCLGITPVQASQFIESFMQKYKKVHEFTKKTIE 546

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
             R  GYV +I GR+     IN+    +R   ER A+N  +QGSAAD+ + AM+ +  S+
Sbjct: 547 QCRNKGYVVSIMGRKRPLANINAQDYKLRTQAERQAVNFVVQGSAADLCKMAMVKIFASI 606

Query: 912 E-DHKLATKMLL 922
                L  ++++
Sbjct: 607 VISPTLTARLVM 618


>gi|94676906|ref|YP_588585.1| DNA polymerase I [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220056|gb|ABF14215.1| DNA polymerase I [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 306

 Score =  300 bits (769), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 106/292 (36%), Positives = 165/292 (56%), Gaps = 11/292 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVDGS ++YRA++A PLL+    G P  AI G  NML  L     K+   S  A+IFD
Sbjct: 2   LLLVDGSFYLYRAYHAFPLLTNNL-GEPTGAIYGVINMLNSLF----KQYSTSSIAIIFD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR++I+ DYK NR ++ + L  Q+  +    Q+ G+P + ++G E+DD+I T  +
Sbjct: 57  AYGQNFRHKIFHDYKLNRTRMSKDLSCQIDPLYKIIQSMGLPLLVVKGVESDDVIGTLAH 116

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A      V I + DKD+ QLVSP   L+++    ++  + V KK+G+ PE ++   AL 
Sbjct: 117 QAMCNNINVLISTGDKDMAQLVSPKIHLFNSTMNMRLGPKEVQKKFGVLPELIIDYIALV 176

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAETA 240
           GD  DNIPG+PGIG KTA +LLQ++G L+ +  N  ++      + K     +  Y E A
Sbjct: 177 GDKSDNIPGVPGIGKKTAKILLQQFGGLKFLYQNLHKLNHFNLCRNKNLATKLDNYREKA 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
            LS +L  +RT+V + I  + LI+++ +  +LI   K  EF + I ++ +  
Sbjct: 237 FLSYQLATIRTNVMLDITYDQLIVKEPDYNQLIKLFKHYEFKRWILQLQSAQ 288


>gi|260220820|emb|CBA28768.1| hypothetical protein Csp_A08790 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 430

 Score =  300 bits (769), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 101/402 (25%), Positives = 170/402 (42%), Gaps = 53/402 (13%)

Query: 28  RKHDGLP---VNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR 84
           R   G       A+    NM+  L    RKE  A + A +FD    TFR+EIYP+YKA+R
Sbjct: 40  RDAAGRHRPETGAVRIMINMMNSL----RKEYPADYVACVFDAKGPTFRDEIYPEYKAHR 95

Query: 85  PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDL 144
             +P+ L  Q+  +    +  G   +++ G EADD+I T    A  +G  V + S DKDL
Sbjct: 96  DPMPDDLRSQIAPIHEIVRLLGWKVLDVPGVEADDVIGTLAATAASQGIEVIVSSGDKDL 155

Query: 145 MQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
            QLV+    + DT+  ++ D+  V  ++G+P   M+  Q L GD++DN+PG+  +G KTA
Sbjct: 156 AQLVNEHITIIDTMNGKRRDLAGVEAEFGVPARLMLDYQTLVGDTVDNVPGVAKVGPKTA 215

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
              LQ+YG+L+ ++ NA+ I      EN+ +  +     R L+ ++TD  +T  ++ L  
Sbjct: 216 VKWLQQYGSLQGVVDNAANI-GGVVGENLRKALDWLPTGRTLLTIKTDCDLTGWVDGLPA 274

Query: 265 ED------CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET 318
            D       +   L +F +   F  L   V                            ET
Sbjct: 275 MDSIAAGAQDTGALRAFYEKYGFKGLAKSVG-------------------------GAET 309

Query: 319 EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQ 378
                     +    L D+ +                       ++   Y  I + + + 
Sbjct: 310 SAAAPAPSARTAEPGLFDEPAG--------------EAAAPASRVSTVEYETIFSYEALD 355

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
             +Q++      +    T ++D   ++ + I+ ST   K  T
Sbjct: 356 ALIQRIHAAPLTALDTETTSLDEMRAEIVGISFSTEPGKGAT 397


>gi|166157038|emb|CAO79495.1| putative 5'-3' exonuclease [uncultured candidate division WWE3
           bacterium EJ0ADIGA11YD11]
          Length = 306

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 152/304 (50%), Gaps = 8/304 (2%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++D  +F++RA++A P   R  DG P NAI GF +ML  +L   + +    +    
Sbjct: 2   KKLLIIDTFNFLHRAYHALPKTFRGPDGQPTNAIYGFTSMLINVLNQIKPD----YVVAA 57

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D    TFR   +  YKA R  + E L  Q+P V     AF I  I ++G+EADD+I T 
Sbjct: 58  LDGKEPTFRVGEFTAYKAQRKPMEEDLQTQIPKVFEVLDAFNIKKIVVEGYEADDVIGTV 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVC 181
               + +   + IIS D+DL QL      +    K+   E +  + V  K G   +K+  
Sbjct: 118 ATKLKGK-VDILIISNDRDLWQLAGNGNIIMVPGKKGEFEWLGEKEVDAKLGFEADKIAD 176

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            + L GD  DNIPG+ G+G  TA  LLQ+YG+LE I  N  +I+ +  ++ +LE  E A 
Sbjct: 177 YKGLRGDPSDNIPGVFGVGEVTATKLLQKYGSLEEIYRNIEKIEPESLKKKLLESYEQAL 236

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +S++L  +  DVP  I LE     D N  ++   L+   F  LI R+  + D    + E 
Sbjct: 237 MSKRLAQIVLDVPFQINLEECKYSDLNKIKVKETLEKYNFKSLIKRLGFSVDEKKKDKES 296

Query: 302 VVLD 305
            V D
Sbjct: 297 EVSD 300


>gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
 gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
          Length = 808

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 161/803 (20%), Positives = 292/803 (36%), Gaps = 182/803 (22%)

Query: 332 SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS--------YTKIVNTKDIQQWVQK 383
            +L+    ++  +++   + +E+ +K  Q+ I            Y  I+   D+++++++
Sbjct: 17  KTLASSKKQVPVKESKLAVEMEKKKKPGQFDIVWPKVESQQVKDYQAILTVSDLKKYLER 76

Query: 384 LETIGSASFKIIT--------------------------------------------DTM 399
               G A F   T                                              +
Sbjct: 77  CVQTGKAGFDWETVASEEIRTHYKKAFEDIEEACATGIIDDKEAESRSESLQKAYLKTPL 136

Query: 400 DAFHSKPIAIAISTLDQKD---DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK- 455
           D +  +   +++S    +      S KV  +F          S  +    K +L  L + 
Sbjct: 137 DPWKGEICTVSLSAAAHESRVVPISHKVGQVFEP--------SMDRGEARKLVLDLLDEY 188

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMS--------------------- 493
            F+NE  LKI  N+ ++     +YG  + G   D ++M                      
Sbjct: 189 LFKNEKVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKKPTSG 248

Query: 494 YVLDS------GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           + L        G + +D A++ +K+      EI  S+   +            ++ E+++
Sbjct: 249 WGLKPATKHIFGVTMNDFAALLKKYKVDFFDEIDASKGEGL-----------LYSAEDAD 297

Query: 548 VILQLWLLLRPKLIVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             LQ +     ++  +  +      +++ P   V+  ME  G+  D +L  Q   E    
Sbjct: 298 YALQHYEY-WSQIAAQIPRYEDWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIM 356

Query: 606 LLSLEENIYDLSGEKFNL-------SSPKQLGDILFTKLKFPSGAKTKTGQW-------- 650
                E I  ++ E FN+           ++  ++F  LK P     KTG          
Sbjct: 357 QEQAAERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALID 416

Query: 651 ---------------------------------------------KTTAQDLEQINCGDN 665
                                                        +   ++         
Sbjct: 417 MAFMLENKLNDIDEEKYLSISLPENWESIDPDKDPTLDKLERGAIRIAKREPHPYKEQAL 476

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            +I  + + ++ + + S++      ++N  + R+H  YS   T TGRL S  PN QN+P 
Sbjct: 477 EVIDQLKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYSPF-TETGRLNSFNPNGQNVPR 535

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
             +   KIR  F+  P K L   D+S  ELR++A  +    + ++F    D+HR  A+ +
Sbjct: 536 PDNDEFKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVM 595

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRF 839
            G +  ++  + R  AK  NF I YG +   L         +R    E A  +      +
Sbjct: 596 TGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAY 655

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             I EY  K     R+ GYV+TI+G       INS     R   ER A N P+QGSAADI
Sbjct: 656 KRIPEYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADI 715

Query: 900 TRRAMISVHKSLEDHK-----LATKMLLQIHDELVFEV--PEEEITTASQIIVHSMEKAC 952
            ++    +++S+   +      +  M+ QIHDE++FE+    E +    + I   ME+  
Sbjct: 716 MKKVQNEIYESIGKQEGVLAHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPP 775

Query: 953 LPKINLRVPLKVNIKVSNNWQEE 975
           +P     VP++    V   W E+
Sbjct: 776 VPGFP--VPIEAEGSVGYRWGEK 796


>gi|209962628|gb|ACJ02109.1| Taq DNA polymerase [Escherichia coli]
          Length = 306

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 106/300 (35%), Positives = 157/300 (52%), Gaps = 10/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 7   EPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDG-----DAV 60

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD++
Sbjct: 61  IVVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVL 120

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+    AEKEG+ V I++ DKDL QL+S    +        I    + +K+G+ P++   
Sbjct: 121 ASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPE-GYLITPAWLWEKYGLRPDQWAD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R+K    RE IL + +  +
Sbjct: 180 YRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMDDLK 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +        + +  RL +FL+ LEF  L++              P
Sbjct: 239 LSWDLAKVRTDLPLEVDFAK--RREPDRERLXAFLERLEFGSLLHEFGLLESPKXLXEAP 296


>gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1]
 gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1]
          Length = 765

 Score =  298 bits (764), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 141/582 (24%), Positives = 255/582 (43%), Gaps = 71/582 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            + + +++  +++  +  G       T  ++    K   + + T  +K         I++
Sbjct: 59  CVTSEEELANYIKHFKDNGCGGLDTETTGLNVVDDKIAGVNLYTPGEKG--------IYV 110

Query: 430 DLSVHTS-QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GIS-MRGF 486
            L+  +    +  K+ L  +++   K   + E+      N  +D  VL+   GI+ ++ +
Sbjct: 111 PLNHVSYMTGAKLKDQLPLDVVK--KYIMQLENTKLDFSNAHFDLQVLYWQMGINNIKAY 168

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQEH 541
            D  L + +L+     H +  + +K++     +  +     +    IP  KI       +
Sbjct: 169 WDTQLAANLLNENE-PHGLKYLYEKYVKKEDTNSKQLATFGTLFRGIPFTKIPLDIAYLY 227

Query: 542 AIENSNVILQLWLLLRP----------KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           A ++  +  +L    R           K  ++ +  V   ++ P +  V  MEI GI++D
Sbjct: 228 AGKDPKMSYELAEFQRKYLNNTDADVVKRHLDDVYRVMIDIEMPTVPAVLDMEIKGIKLD 287

Query: 592 QDLLKQVSAEISKNLLSLEENI------YDLSGEKF---------------NLSSPKQLG 630
            DL K++SA+  +    +EE +      YD   ++F               N+SSPKQLG
Sbjct: 288 LDLNKKLSAKYRQKKAEVEEKLKIEFNKYDKEFKEFKIKHPDLASRLSNPINISSPKQLG 347

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
              +  L      + K             +   D P+ K ILE+R+L K+  TY D LP 
Sbjct: 348 IFFYDMLGLKPVDREKPRGTGAD-----ILGKFDVPVAKLILEYRELDKLLGTYIDKLPT 402

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            ++KRT ++H  ++   T+TGR +S  PNLQNIP        IR+ FI      LI  DY
Sbjct: 403 VLSKRTGKIHCTFNQYGTVTGRFSSDSPNLQNIPSHNKD---IRKMFIPDDGNILIGGDY 459

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK------------VSPQMR 798
           SQ E R LAH++    + + ++N  DI+  +A+ ++ V  E+            +  Q R
Sbjct: 460 SQQEPRSLAHMSGDEKMIKAYKNGKDIYATIASYVYKVPYEECLEFNPDGTTNTIGKQRR 519

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
            + K +   IIYG     +A +L + + EA   I  +F  FP + ++ E +    R+ GY
Sbjct: 520 SNLKGVVLGIIYGRGVNSIAEKLNLTKKEAQSIIDEFFTLFPKVKQFTEDSIRMARELGY 579

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINA-PIQGSAADI 899
           V T+ GRR    +IN P+   +  ++  + N  P   +A D+
Sbjct: 580 VTTLSGRRRRLPDINLPRYEFKYKDKSTSDNFNPFFDTADDV 621



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            + +    ER  +N+ IQGSAAD+T+ AMI++H +    +L   ML+Q+HDE++ + P +
Sbjct: 665 NTGLIAQAERQCVNSRIQGSAADMTKIAMIALHNNKRLKELGYCMLIQVHDEIIGQCPID 724

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +     I+   M  A    + L VP+ V+I ++  W 
Sbjct: 725 VVKEVKPILESCMLNA----VKLVVPMSVDIDITKCWY 758


>gi|308803633|ref|XP_003079129.1| DNA polymerase I (ISS) [Ostreococcus tauri]
 gi|116057584|emb|CAL53787.1| DNA polymerase I (ISS) [Ostreococcus tauri]
          Length = 538

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 128/505 (25%), Positives = 235/505 (46%), Gaps = 36/505 (7%)

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
             F D  + +++++  R+      I++  +S   +E+ K+  +S              A 
Sbjct: 49  ANFVDCRVDAWLMNPDRAYDG--GISE--VSGCFEEVTKNGDASWD---------SPTAR 95

Query: 544 ENSNVILQLWLLLR-PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
             +++ L L    R  ++   + +     ++  +   +  M+  G+  D+       A  
Sbjct: 96  LRADLALALRYYQRGSEIPRMQGISFARIVEAKIAVALGAMQHRGMCFDRHEANTQRAAA 155

Query: 603 SKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKT--KTGQWKTTAQDLEQ 659
           +  +  L+    D+ G  + NLSS +Q+GD+L+ +LK P  +    K  +    +  ++ 
Sbjct: 156 NARVEELQNRARDVIGGVEINLSSAQQVGDVLYNQLKLPPPSAHAMKGAKSSHLSTSVDV 215

Query: 660 INCGDNPIIKNILEWRQLSKIKSTY-ADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLE 717
           +    +P  + +L+ R   K ++          +N     R+HT ++  ST TGRL+S  
Sbjct: 216 LQQMKHPFAQIVLDHRGALKERAMCDGYDKATVVNAEGHARIHTRWNNTSTATGRLSSSA 275

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS--- 774
           PN+Q +   +     +R  FI+PP + L++ADYSQIELR+LAH+ +   L  +F      
Sbjct: 276 PNVQQVGRGS-----MRNCFIAPPGRVLVAADYSQIELRVLAHLTEDERLISLFNEHSRT 330

Query: 775 LDIHRMVAAEIFGVNIEKVS-PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
           +D+   +      + IE  + P  R  AK   + I+YG     LA +L   + EA  YI 
Sbjct: 331 VDVFCAIWNAGRNLPIETPTEPGTRDIAKRTAYGIVYGQHATGLAEKLNCSKFEAQGYIA 390

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFG-RRIHYDEINSPKSSIRNINERAAINAPI 892
            +   FP + ++I +      ++G V   F  R     +I+S   S R+  +R A+N  I
Sbjct: 391 AFHRAFPRVQQWISRVIQTAERDGAVIIPFSGRHRPLPKIHSNVFSERSEAQRQAVNTVI 450

Query: 893 QGSAADITRRAMISVHKSLEDHKLAT---KMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           QGSA+D+ + AM+   ++ +  +      +++ QIHDEL+FE  ++ +  A ++I   ME
Sbjct: 451 QGSASDLIKTAMLRWCEATKAGEARAELVELVAQIHDELLFECEKDYVQEAVRVIRSCME 510

Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974
            A    + L VP  V I    +W E
Sbjct: 511 GA----LCLSVPTPVKISTGKSWGE 531


>gi|154247529|ref|YP_001418487.1| 5'-3' exonuclease [Xanthobacter autotrophicus Py2]
 gi|154161614|gb|ABS68830.1| 5'-3' exonuclease [Xanthobacter autotrophicus Py2]
          Length = 299

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 123/291 (42%), Positives = 180/291 (61%), Gaps = 3/291 (1%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q ++H+ L+DGSSF++RAFY  P + R+ DG PV AI+GFC M+W LL  +     ASH 
Sbjct: 7   QADDHVLLIDGSSFLWRAFYGAPAVIRRSDGHPVGAISGFCWMMWTLLHETSAVPPASHR 66

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AVIFD     +R++I   YKANR + P+ +  Q   VR A  A  IP++E+ G+EADD+I
Sbjct: 67  AVIFDAGRRNWRHDILASYKANRNEPPDDIKRQFKPVRAACAALPIPSVELAGYEADDLI 126

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPT--TCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           ATYT  A   G  VTI + DKDL QLV      CLYD  K   +    V++++G+PP  +
Sbjct: 127 ATYTRKAVASGAGVTIATGDKDLAQLVDDRTGVCLYDASKGRTMREAEVLERFGVPPAGV 186

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L AL GD+ DNIPG+PGIG K AA L+  +G+LE+I+  A   +++K+   + ++A +
Sbjct: 187 LDLLALAGDTTDNIPGVPGIGAKRAAELVSRHGSLEDIIA-AGTARKEKQAAKVADHAAS 245

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           AR+SR L  L T VP+ + L HL  ++ +     +FL+  +   L  R++ 
Sbjct: 246 ARISRSLATLDTAVPVPLALAHLGAQEPDMAAFAAFLEEWDLGGLAERLSA 296


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score =  297 bits (761), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 157/633 (24%), Positives = 293/633 (46%), Gaps = 79/633 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  +K++    +KL+ +                       ++  D +    F  +   I 
Sbjct: 5   ITQSKELTALKEKLKDLPYVYLDTE---------------VAVKDFEKVDYFNDKVRLIQ 49

Query: 431 LSVHTSQDSTGKNTLTKEIL-SYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
           +             + ++ L  +LK+  E++    +GHN+K+D   L   + +  +   D
Sbjct: 50  IGTQEDIFVIDAFKVERDTLKEFLKEVLESKGI--VGHNLKFDLKFLATNFDVYPKVVFD 107

Query: 489 IMLMSYVLDSGRSS--HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
             + S +L  G +S  H ++++A +    T +E+ K+ ++S    +    +  E++ ++ 
Sbjct: 108 TFIASKILAKGDNSQKHSLSAVAVR---LTDEEVDKTYQTSPWWVENLTKEQIEYSAKDI 164

Query: 547 NVILQLWLLLRPKLIVEK--------------LLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            V+  ++     +L  E+              +++    L+   +  +  +E++GI ID+
Sbjct: 165 EVLRSIFREQVVRLNEEQTHLKSSGETYKVFGVVNPVAALEMAFLPCLVSIELSGIPIDE 224

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLS--SPKQLGDILFTKLKFPSGAKTKTGQW 650
             L  +     KN  +  +N+Y     K+ +   SP+Q+ + L  KL        KT + 
Sbjct: 225 KQLSNLI----KNSKTTFQNLYIEFKRKYYIDPFSPQQVANFLTKKLGLKLP---KTEKG 277

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
             ++QD+      D P +K +L  R   K      + L  ++  +  RV+  +      T
Sbjct: 278 SFSSQDVHLKPYEDKPEVKTLLSIRYEKKTLDKL-EELSKYV--KNSRVYGEFKQIGAST 334

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR++S +PNLQNIP        ++  F +P     I ADYSQIELRI A   K   + + 
Sbjct: 335 GRMSSYKPNLQNIPK------NLKSIFRAPDGYLFIIADYSQIELRIAAEYTKDKSMIKA 388

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIP 824
           F+   D+H++ A+ I G + ++++ + R  AK INF +IYGISP  L         + I 
Sbjct: 389 FQEKKDLHKLTASVITGKDYQEITKEERNLAKAINFGLIYGISPKSLVEYAKNNYDIDIT 448

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY--VETIFGRRIHYDEINSPKSSIRNI 882
            S+A  + + +F+ +P   E+ E  KN++ ++ +  VET+ GR++               
Sbjct: 449 LSQAKTFHENFFNFYPKFKEWHENVKNYLEKHKFIQVETLLGRKLI------------AY 496

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
               A+N PIQGS +D+ + A++  +KSL D  L  K++  +HDE+V EV +E++    +
Sbjct: 497 KFTDAVNYPIQGSGSDLLKMAVVLFYKSLLD--LDAKVVNLVHDEIVVEVKQEDVDKVQE 554

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           I+  SMEKA    +   VP++  I VS +W +E
Sbjct: 555 ILSQSMEKAGRYLLK-EVPVEFEINVSKSWSKE 586


>gi|170592393|ref|XP_001900953.1| DNA polymerase I family protein [Brugia malayi]
 gi|158591648|gb|EDP30253.1| DNA polymerase I family protein [Brugia malayi]
          Length = 475

 Score =  297 bits (761), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 128/436 (29%), Positives = 212/436 (48%), Gaps = 14/436 (3%)

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYE-RLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           A  N+ + L +   L       +L  +    L+   + + S++EITGI  D++    +++
Sbjct: 44  AAINAFICLHMHNDLMS--AAVRLSSIKSVELELKSVVLFSEIEITGIAFDRNKALTLNS 101

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           ++ + L  +E   Y +SG  FN  S  ++  ILF +L+ P      TG+  +T + + Q 
Sbjct: 102 KLQQKLTEIEAKAYGISGIPFNFGSAAEISQILFVRLQIPPPN-ASTGRHYSTNKIVLQQ 160

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                PII  ILEWR+++   +T    L        +    F  +    TGR+ ++ PN+
Sbjct: 161 LAPKYPIISLILEWRRINTALTTSLPILLKLCCSDGRIRANF--ITHCCTGRVLTVHPNV 218

Query: 721 QNIPIKTD-LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           QN+       G  IR  FI P  + L+S+DY Q+E+R+LAH++    L  +F    D   
Sbjct: 219 QNVQKDAIIDGFSIRSLFIVPKGRILLSSDYRQLEMRMLAHLSADPNLISLFLTKDDFFE 278

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           ++  +    N        R   K + + IIYG+    L+ +L I +  A   I  +F  F
Sbjct: 279 IITNKW-NKNETLHIKVDRNKVKQLCYGIIYGMGAISLSKELGISKQHAQQMIISFFQLF 337

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK-SSIRNINERAAINAPIQGSAAD 898
           P +  +++K     R NG+V T+ GRR    +I S    +     ER AIN  IQGS A+
Sbjct: 338 PKVRTWMDKILAMCRTNGFVSTLLGRRRFLPQITSAVLQTELAQAERQAINTCIQGSVAE 397

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + + A++++ K+L      + +++Q+HDE++ E  E  I +  +II HSM        NL
Sbjct: 398 LFKMALLNLRKNL--LGTNSSIVMQLHDEVLIETDESSIASIVEIIKHSMTSVTP---NL 452

Query: 959 RVPLKVNIKVSNNWQE 974
           RVPL V I    +W E
Sbjct: 453 RVPLAVKISFGKSWGE 468


>gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 808

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 157/738 (21%), Positives = 279/738 (37%), Gaps = 136/738 (18%)

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
           +T     +    K +   I     T I++ K+ +   + LE         +   +D +  
Sbjct: 88  ETAASKEIRVHYKKAFEDIEEARTTGIIDDKEAESRSESLEK------AYLKTPLDPWKG 141

Query: 405 KPIAIAISTLDQKD---DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK-FFENE 460
           +   +++S    +      S KV  +F          S  ++   K +L  L +  F+NE
Sbjct: 142 EICTVSLSAAVHESRVVPISHKVGQVFEP--------SMDRDEARKLVLDLLDEYLFKNE 193

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMS---------------------YVLDS 498
             LKI  N+ ++     +YG  + G   D ++M                      + L  
Sbjct: 194 KVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKKPTSGWGLKP 253

Query: 499 ------GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
                 G + +D +++ +K+      EI  S+   +            ++ E+++  LQ 
Sbjct: 254 ATKEIFGVTMNDFSALLKKYKVDFFDEIDASKGEGL-----------LYSAEDADYALQH 302

Query: 553 WLLLRPKLIVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           +     ++  +  +      +++ P   V+  ME  G+  D +L  Q   E         
Sbjct: 303 YEY-WSQIASQIPQYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAA 361

Query: 611 ENIYDLSGEKFNL-------SSPKQLGDILFTKLKFPSGAKTKTGQW------------- 650
           E I  ++ E FN+           ++  ++F  LK P     KTG               
Sbjct: 362 ERIKQVAKETFNVDINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALIDMAFML 421

Query: 651 ----------------------------------------KTTAQDLEQINCGDNPIIKN 670
                                                   +   ++          +I  
Sbjct: 422 ENKLNDIDEEKYLSIPLPENWEIIDPDKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQ 481

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           + + ++ + + S++      ++N  + R+H  YS   T TGRL S  PN QN+P   +  
Sbjct: 482 LKKIQKYTTLLSSHIVGREKYLNFMSGRIHAGYSPF-TETGRLNSFNPNGQNVPRPDNDE 540

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            KIR  F+  P K L   D+S  ELR++A  +    + ++F    D+HR  A+ + G   
Sbjct: 541 FKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKPE 600

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRFPGIHE 844
           +++  + R  AK  NF I YG +   L         +R    E A  +      +  I E
Sbjct: 601 DEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRIPE 660

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y  K     R+ GYV+TI+G       INS     R   ER A N P+QGSAADI ++  
Sbjct: 661 YQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIMKKVQ 720

Query: 905 ISVHKSLEDHK-----LATKMLLQIHDELVFEV--PEEEITTASQIIVHSMEKACLPKIN 957
             +++S+   +      +  M+ QIHDE++FE+    E +  A + I   ME+  +P   
Sbjct: 721 NEIYESIGKQEGVLAHGSADMIAQIHDEIIFEIDDDPEIVVAAEKQIKQVMEQPPVPGFP 780

Query: 958 LRVPLKVNIKVSNNWQEE 975
             VP++    V   W E+
Sbjct: 781 --VPIEAEGSVGYRWGEK 796


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 136/552 (24%), Positives = 240/552 (43%), Gaps = 56/552 (10%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD 504
              E +  LK+    +    +GHN+K+D   ++  GI      D M+ S++L  G   H 
Sbjct: 54  DLPEAVDVLKELIAKKGV--VGHNLKFDLKFMYPLGIVPYATFDTMIGSFLL--GYERHS 109

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-- 562
           ++ +A++ L YT     KS + S         Q  E+A  +  V+ +L+  +R KL    
Sbjct: 110 LSHVAERLLGYTMD---KSLQLSDWSRTALTKQQIEYAATDVLVVRELFYKMREKLNALG 166

Query: 563 -----EKLLHV-----------YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
                E+LL                ++   +  ++++E+ GI +D++ ++++S E  K L
Sbjct: 167 ETDRGEELLRTRTARVFGLTNPATVVEMAFVQEIARLEMNGIPVDEEEIERLSREYEKKL 226

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             L  + Y     + +  SPKQ+G  L  +L        K           E  +  +  
Sbjct: 227 QKLIMDFY--IKYRIDPMSPKQIGSFLTGRLGLELPETQKGNISTDDKTLAEFSHVKE-- 282

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            +++ILE R++ K      + L   I  R  RV+  +     +TGR++S  PN+QNIP  
Sbjct: 283 -VRDILEIRRIKKALDKLKE-LKGFI--RNGRVYPEFRQIGAVTGRMSSSNPNVQNIPRD 338

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                  R  F +      + AD+SQIELRI A   +   + + F    D+HR  A+ + 
Sbjct: 339 M------RSLFRASEGNLFVIADFSQIELRIAAEYVQDENMLRAFREGRDLHRYTASLVL 392

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR------SEAADYIKRYFHRFP 840
               E+++ + R+ AK +NF +IYGIS   L+   R           A  + +++F  F 
Sbjct: 393 EKPEEEITKEERQLAKAMNFGLIYGISARGLSEYARSSYGVELEIEAADVFRQKFFKFFH 452

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
              ++ +  K  +++N  V         Y          R      A+N PIQG+ AD+ 
Sbjct: 453 AFKDWHDSVKRELKENKEVVGTTLLGRPY----------RASTFTDAVNYPIQGTGADLL 502

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + A++          L+ +++  +HDE+V E P+E      + + H+M  A    +   V
Sbjct: 503 KLAVLMFDVETRKKGLSARVVNLVHDEIVVECPQELAEQIKESLEHAMVHAGSIVLK-HV 561

Query: 961 PLKVNIKVSNNW 972
           P++V   V   W
Sbjct: 562 PVEVESVVDERW 573


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 138/549 (25%), Positives = 252/549 (45%), Gaps = 58/549 (10%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSG-RSSHDIASI 508
            +LK+  EN+    IGHN+K+D   L   +GI  +   D M+ S +L    R  H ++++
Sbjct: 70  EHLKELLENKGV--IGHNLKFDIKFLKTNFGIFPQIVFDTMIASQLLSEDSREKHSLSAL 127

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-------- 560
           + +        + KS++ S    K    +   +A ++  V+ +++ +LR +L        
Sbjct: 128 SYRLTDNH---LDKSQQRSPWGIKNLTEEQLRYAAKDVQVLREIFPVLRDELNRIETPHK 184

Query: 561 ------IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
                     L +    ++   +  ++ +E+ G+ +D+ LLK +  ++S +     E I 
Sbjct: 185 ATGKIHETFGLDNGVAVVEMAFVPQLADIELRGMPVDEKLLKDMLQKVSTDYQR--EYID 242

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
            +     +  SP+++ + L +KL         T +   ++QD       D   ++ +L  
Sbjct: 243 FVRRYGVDPFSPQKVTNWLTSKLGLKLPT---TQKGSLSSQDSALRRYIDREEVRKLLHI 299

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           R   KI     +   + IN    R++T +      TGR+AS+ PNLQNI         +R
Sbjct: 300 RSEKKILDKLKELKAHLING---RIYTQFKQIGAPTGRMASMRPNLQNITRD------LR 350

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
             F  P  KKLI ADYSQIELRI A       + + F    D+HR  A+ I G   ++++
Sbjct: 351 VLFRPPEGKKLIVADYSQIELRIAAEYVNDETMIKAFSEGKDLHRFTASLILGKEYDQIT 410

Query: 795 PQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
              R+ AK INF +IYGISP  L      +  + I   +A  +  R+F  + G   + ++
Sbjct: 411 KDERQMAKAINFGLIYGISPRSLMEYARNSYGVDISLKDAQIFHSRFFEVYKGFKSWHDR 470

Query: 849 TKNFVRQN--GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
            K +++++    V T+ GRR+                   A+N P+QG+ +D+ + A++ 
Sbjct: 471 VKEYLKEHNKMVVYTLLGRRMVVRRFT------------EAVNFPVQGTGSDLLKMAVVF 518

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
             K  ED      ++  +HDE++ E  E        I+  SM +A    +  +VP++  +
Sbjct: 519 FGKLKEDR--DAGIVNLVHDEIIVECSESIADEIRDILSESMLRAGKILLK-KVPVEFEV 575

Query: 967 KVSNNWQEE 975
           ++  +W E+
Sbjct: 576 EIVESWAEK 584


>gi|126332210|ref|XP_001374207.1| PREDICTED: similar to polymerase (DNA directed) nu, [Monodelphis
           domestica]
          Length = 816

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 142/549 (25%), Positives = 261/549 (47%), Gaps = 52/549 (9%)

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
           P+    S     DD    ++     L          +    +   + L +  + +H + I
Sbjct: 272 PVMDGFSI----DDRYIYIKVEHDTLWRQE------QEMSNQFARTMLFQILKCKHTV-I 320

Query: 466 GHNIK-YDKLVLHRYG--------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
             N K + K VL  YG        +      D  + +++LD   +      + +K+    
Sbjct: 321 CFNAKEFVKTVLQVYGSYCHWKHVVDFV-VLDPRIAAWLLDPSDTISSFEDLVRKYF--- 376

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
             E   + K +      S + +  +  +N  ++ ++ + L  KL V  L  ++  L+ P+
Sbjct: 377 --EESVTMKVNNTNGGSSHNMMFSNQRKNLRILYRITVDLCSKLKVCGLWQLFYTLELPL 434

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           I +++ ME    Q+D++ +K+ S  +   L  LE+  +  +GE+F ++S  QL ++LF K
Sbjct: 435 IPILAVMETHKFQVDKEEMKRTSKLLGCRLKELEQEAHVAAGEQFLVTSNNQLREVLFDK 494

Query: 637 LKFPSGAKTKT------GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           LK     K+KT       +  +T++ +       +P+ K ILE+RQ+ K+KST+ D L +
Sbjct: 495 LKLHLLCKSKTLPKTELQKHPSTSEAVLNALQDLHPLPKIILEYRQIHKVKSTFVDGLLS 554

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI---------------RR 735
            + K    +   ++   T++GRL++ +PN+Q I        K                R 
Sbjct: 555 CMRKG--FIAPTWNQTGTVSGRLSAKKPNIQGISKHPIQITKHQYEQGKEDEKTTVSPRT 612

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGVNIEKV 793
            FIS      ++AD+SQIELRILAH++    L ++F+   SLD+   + ++  G+ +E+V
Sbjct: 613 MFISSKGYTFLAADFSQIELRILAHLSCDPELLKLFQEPESLDVFMSLTSQWKGIPLEQV 672

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           +   R   K I +S++YG    RLA  L +   +++ +I+ +  ++  IH++ ++T    
Sbjct: 673 THVEREQTKRIVYSVVYGAGKERLAACLGVTSLQSSQFIESFLQKYKKIHDFTQETIMQC 732

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
              GYV +I GRR     IN+    +R   ER A+N  +QGSAAD+ + AMI +  S+  
Sbjct: 733 HHKGYVTSIMGRRRPLPNINAKDYRLRTQAERQAVNFVVQGSAADLCKIAMIRIFTSIAT 792

Query: 914 H-KLATKML 921
             KL  +++
Sbjct: 793 SPKLTARLV 801


>gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
 gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
          Length = 808

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 156/738 (21%), Positives = 278/738 (37%), Gaps = 136/738 (18%)

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
           +T     +    K +   I     T I++ K+ +   + LE         +   +D +  
Sbjct: 88  ETAASKEIRVHYKKAFEDIEEARTTGIIDDKEAESRSESLEK------AYLKTPLDPWKG 141

Query: 405 KPIAIAISTLDQKD---DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK-FFENE 460
           +   +++S    +      S KV  +F          S  ++   K +L  L +  F+NE
Sbjct: 142 EICTVSLSAAAHESRVVPISHKVGQVFEP--------SMDRDEARKLVLDLLDEYLFKNE 193

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMS---------------------YVLDS 498
             LKI  N+ ++     +YG  + G   D ++M                      + L  
Sbjct: 194 KVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKKPTSGWGLKP 253

Query: 499 ------GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
                 G + +D +++ +K+      EI  S+   +            ++ E+S+  +Q 
Sbjct: 254 ATKHIFGVTMNDFSALLKKYKVNFFDEIDASKGEGL-----------LYSAEDSDYAVQH 302

Query: 553 WLLLRPKLIVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           +     ++  +  +      +++ P   V+  ME  G+  D +L  Q   E         
Sbjct: 303 YEY-WSQIAAQISRYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAA 361

Query: 611 ENIYDLSGEKFNL-------SSPKQLGDILFTKLKFPSGAKTKTGQW------------- 650
           E I  ++ E FN+           ++  ++F  LK P     KTG               
Sbjct: 362 ERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFML 421

Query: 651 ----------------------------------------KTTAQDLEQINCGDNPIIKN 670
                                                   +   ++          +I  
Sbjct: 422 ENKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQ 481

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           + + ++ + + S++      ++N  + R+H  YS   T TGRL S  PN QN+P   +  
Sbjct: 482 LKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYSPF-TETGRLNSFNPNGQNVPRPDNDE 540

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            KIR  F+  P K L   D+S  ELR++A  +    + ++F    D+HR  A+ + G + 
Sbjct: 541 FKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSE 600

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRFPGIHE 844
            ++  + R  AK  NF I YG +   L         +R    E A  +      +  I E
Sbjct: 601 AEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRIPE 660

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y  K     R+ GYV+TI+G       INS     R   ER A N P+QGSAADI ++  
Sbjct: 661 YQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIMKKVQ 720

Query: 905 ISVHKSLEDHK-----LATKMLLQIHDELVFEV--PEEEITTASQIIVHSMEKACLPKIN 957
             +++S+   +      +  M+ QIHDE++FE+    E +    + I   ME+  +P   
Sbjct: 721 NEIYESIGKQEGVLSHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFP 780

Query: 958 LRVPLKVNIKVSNNWQEE 975
             VP++    V   W E+
Sbjct: 781 --VPIEAEGSVGYRWGEK 796


>gi|118090791|ref|XP_420834.2| PREDICTED: similar to DNA polymerase N [Gallus gallus]
          Length = 530

 Score =  296 bits (757), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 140/492 (28%), Positives = 241/492 (48%), Gaps = 38/492 (7%)

Query: 461 HFLKIGHNIK-YDKLVLHRYG--ISMRGFEDIM-----LMSYVLDSGRSSHDIASIAQKW 512
               I  N K + K VL  YG  IS +   D +     + +++++S  +      + Q +
Sbjct: 41  KVPVICFNAKDFLKTVLQVYGSGISWKQVADSIVLDPRIAAWLINSSDTVPSFECLLQYF 100

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
                 E + +    +       +   ++ + N   +  + + L   L V+ L  ++  L
Sbjct: 101 EKSYSVETVNTDTGGL------RNSRHQNLVVNLQKLYTIMMGLAHDLQVQGLWKLFCTL 154

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
           + P+I V++ ME   I +D+  LK+ S  +   L  LEE  + ++GE+F L+S  QL ++
Sbjct: 155 ELPLIKVLAVMETHKIHVDKQELKKTSEILGLRLKELEEEAHQIAGERFLLTSSSQLREV 214

Query: 633 LFTKLKF----PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           LF KLK         +T+  Q  +T++ +       +P+ K +LE+RQ+ K+KSTY D L
Sbjct: 215 LFEKLKLHTLCEKIPRTERQQVASTSEVVLSKLQDLHPLPKLMLEYRQVRKMKSTYVDGL 274

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------ 733
              + K    +   ++   T+TGRL+S  PN+Q I   P++    Q I            
Sbjct: 275 RTCMRKG--FICPTWNQTGTVTGRLSSKHPNIQGISKHPVRITKKQYIKGKEEEILTISP 332

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIE 791
           R  F+S      ++AD+SQIELRILA ++    L ++F+     DI   +A++  G+  E
Sbjct: 333 RALFVSKKGYTFLAADFSQIELRILADLSAEPELLKLFQEPETTDIFTSLASQWKGIPSE 392

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V    R  AK I +S++YG    RLA  L I   EA  +I+ +  ++  +HE+ +KT  
Sbjct: 393 QVKQTDREQAKRIVYSVVYGAGKERLAECLGITPHEAGHFIESFMQKYKKVHEFTKKTIG 452

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH-KS 910
             +  GYV +I GR+     INS    +R   ER A+N  +QGSAAD+ + AM+ +    
Sbjct: 453 QCQNKGYVVSIMGRKRLLANINSQDYKLRTQAERQAVNFVVQGSAADLCKMAMVEIFTSV 512

Query: 911 LEDHKLATKMLL 922
           +    L  ++++
Sbjct: 513 VVSPTLTARLVM 524


>gi|183231230|ref|XP_653960.2| DNA-directed DNA polymerase [Entamoeba histolytica HM-1:IMSS]
 gi|169802582|gb|EAL48574.2| DNA-directed DNA polymerase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 657

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 139/543 (25%), Positives = 239/543 (44%), Gaps = 49/543 (9%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKL--------VLHRYGISMRGFEDIMLMSYVLDSGR-S 501
             L     N   L I +N+  +          +L  +  +     D  + +  +D G   
Sbjct: 142 KELLPEIINSRRLIIVYNLMEEIKNYRNNIKCILENFN-TNNTIFDTYIGASTIDPGSVD 200

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
               + I   +     K  ++ R            Q +  A++   V           + 
Sbjct: 201 GKTFSQICLVYEVIINKSTIEER----------LKQTRRLAVKEVEV-----------MN 239

Query: 562 VEKLLHVYERLDKPMIDVVSQMEI-TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
            + ++ V++  +  +  V+ +M      +ID  LL +   ++ +    +E     + G  
Sbjct: 240 NDNMIKVFQEQEMIIDGVLIEMNYCNEFKIDNKLLNEQRKKLIEEQHKIEMETKKIIGRT 299

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
            NLSSP+Q+   L        G K K         D + ++  D+P  K +LE+R++SK+
Sbjct: 300 INLSSPEQVKKELIRFNIGIDGIKKK------ATTDKKILSQSDHPFAKLVLEYRKISKL 353

Query: 681 KSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT----DLGQKIR 734
            S   + +      +     + T +S  + +TGR+ S  PNLQ IP ++          R
Sbjct: 354 LSGVIEQIRKCCIKSGDEYFIRTTWSQTAIVTGRIQSKSPNLQQIPKQSFSLPQCLIIPR 413

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
             FI+      ++ DY+QIELRILA   K   L + F+++ D+HR++AA     N+  ++
Sbjct: 414 DLFITHNNNTFVAIDYNQIELRILADFTKDHHLIEFFKSNTDVHRLIAAHWLKKNVNDIT 473

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              RR AKTI +  IYGI PF LA QL +   E+  +++ +  +FP   ++ E+T     
Sbjct: 474 DDERRKAKTIVYGCIYGIGPFSLADQLHVSLDESKAFLESFLDQFPAFKKWKEETITNAS 533

Query: 855 QNGYVETIFGRRIHYDEINSPK-SSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
             G+V TI  RR   + +           ++R A+N+PIQG+AADI +  MI + K L  
Sbjct: 534 TTGFVHTINNRRRRINNLTDCNDKKTVAESKRIAVNSPIQGTAADIIKMCMIEIFKKLHS 593

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +  ++LL IHDE+V EVP+  +      + H ME      + L VPL V ++    W 
Sbjct: 594 SWVGVQLLLNIHDEIVLEVPDHLLDEVCVTLKHLMEH----IVKLEVPLVVTVETGKKWG 649

Query: 974 EEN 976
             +
Sbjct: 650 SLH 652


>gi|170056642|ref|XP_001864122.1| DNA polymerase theta [Culex quinquefasciatus]
 gi|167876219|gb|EDS39602.1| DNA polymerase theta [Culex quinquefasciatus]
          Length = 1177

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 138/600 (23%), Positives = 267/600 (44%), Gaps = 55/600 (9%)

Query: 406  PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
               +A +     D         +++L     +DS  K  L ++++   +K F  E     
Sbjct: 596  LSGVAFTLPQDSDPDQPDNAVFYLNLR----KDSEIKCNLKQDLI---RKLFTREDLTID 648

Query: 466  GHNIKYDKLVLHRYGI------SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK- 518
              + K    + H+ G+       +    D  +  ++L +      + ++ Q++       
Sbjct: 649  MFDAKDQLKLAHKGGLLDLKQEVVVSVRDPKVACWLLQAEDKVIPLQAMVQQYCPEMTAI 708

Query: 519  -EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-------EKLLHVYE 570
             ++      S      +     +  I  +     +  LL  +L         + +   + 
Sbjct: 709  CQLAGRSPGSTGPAS-NCGSAIDAKIRCTVESFLVHHLLLSQLDHFTTQDRPQDMTATFT 767

Query: 571  RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL-SGEKFNLSSPKQL 629
              + P+   +++ME+ G   D   L  + A +      + E +  L  G K +  S +++
Sbjct: 768  SREMPIHVALARMELVGFPADGAKLGALIARLKAAKERIAERVRQLNGGRKLDFGSTREV 827

Query: 630  GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
              +L          K + G+ +T+ Q LE+I   D+P+   ++ WR++    S   + L 
Sbjct: 828  AAVL-------KVPKDRNGRARTSRQVLERI---DSPLAALVIAWRKIDSNLSRTIEPLG 877

Query: 690  NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI--PIKTDLGQKIRRAF-------ISP 740
              I    +R++   S   T TGR++  EPNLQ +    + ++       F          
Sbjct: 878  RGIVG-GRRIYGS-SYCFTSTGRISMHEPNLQTVVKDFRVEIEPGTVEMFSCRGTFACED 935

Query: 741  PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRR 799
             +K LISAD+ Q+EL +L H+++   L  V ++  D+ R +AA+   +  E +VS ++R 
Sbjct: 936  SSKVLISADFCQLELCVLTHLSQDRKLLAVMKSGKDVFRGIAAKWNHIEDEREVSDELRN 995

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            + K I + +IYG+    +A +L +    A   ++++   +P I  Y EK     R+ GY+
Sbjct: 996  YTKAIVYGVIYGMGARSMAAELNVDEDTARTLMEQFHATYPEIRRYAEKVVQVTRERGYI 1055

Query: 860  ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-- 917
            ET+ GRR +   I+S  S+ R+  ER A+   +QGSAADI + A++ + ++L  ++    
Sbjct: 1056 ETLTGRRRYLPAIHSTDSTKRSEAERQAVCTTVQGSAADILKNAILRMARNLRKYRERLA 1115

Query: 918  ---TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
                +++L +HDEL+FE P ++     +I+  SME       NL +PL+V +K   +W E
Sbjct: 1116 LGEVELVLHMHDELIFEAPRDQARKVGKILKSSMENCA----NLSLPLRVKVKSGPSWGE 1171


>gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51]
 gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51]
          Length = 802

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 156/738 (21%), Positives = 278/738 (37%), Gaps = 136/738 (18%)

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
           +T     +    K +   I     T I++ K+ +   + LE         +   +D +  
Sbjct: 82  ETAASKEIRVHYKKAFEDIEEARTTGIIDDKEAESRSESLEK------AYLKTPLDPWKG 135

Query: 405 KPIAIAISTLDQKD---DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK-FFENE 460
           +   +++S    +      S KV  +F          S  ++   K +L  L +  F+NE
Sbjct: 136 EICTVSLSAAAHESRVVPISHKVGQVFEP--------SMDRDEARKLVLDLLDEYLFKNE 187

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMS---------------------YVLDS 498
             LKI  N+ ++     +YG  + G   D ++M                      + L  
Sbjct: 188 KVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKKPTSGWGLKP 247

Query: 499 ------GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
                 G + +D +++ +K+      EI  S+   +            ++ E+S+  +Q 
Sbjct: 248 ATKHIFGVTMNDFSALLKKYKVNFFDEIDASKGEGL-----------LYSAEDSDYAVQH 296

Query: 553 WLLLRPKLIVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           +     ++  +  +      +++ P   V+  ME  G+  D +L  Q   E         
Sbjct: 297 YEY-WSQIAAQISRYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAA 355

Query: 611 ENIYDLSGEKFNL-------SSPKQLGDILFTKLKFPSGAKTKTGQW------------- 650
           E I  ++ E FN+           ++  ++F  LK P     KTG               
Sbjct: 356 ERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFML 415

Query: 651 ----------------------------------------KTTAQDLEQINCGDNPIIKN 670
                                                   +   ++          +I  
Sbjct: 416 ENKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQ 475

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           + + ++ + + S++      ++N  + R+H  YS   T TGRL S  PN QN+P   +  
Sbjct: 476 LKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYSPF-TETGRLNSFNPNGQNVPRPDNDE 534

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            KIR  F+  P K L   D+S  ELR++A  +    + ++F    D+HR  A+ + G + 
Sbjct: 535 FKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSE 594

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRFPGIHE 844
            ++  + R  AK  NF I YG +   L         +R    E A  +      +  I E
Sbjct: 595 AEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRIPE 654

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y  K     R+ GYV+TI+G       INS     R   ER A N P+QGSAADI ++  
Sbjct: 655 YQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIMKKVQ 714

Query: 905 ISVHKSLEDHK-----LATKMLLQIHDELVFEV--PEEEITTASQIIVHSMEKACLPKIN 957
             +++S+   +      +  M+ QIHDE++FE+    E +    + I   ME+  +P   
Sbjct: 715 NEIYESIGKQEGVLSHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFP 774

Query: 958 LRVPLKVNIKVSNNWQEE 975
             VP++    V   W E+
Sbjct: 775 --VPIEAEGSVGYRWGEK 790


>gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum]
          Length = 1076

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 146/618 (23%), Positives = 270/618 (43%), Gaps = 36/618 (5%)

Query: 373  NTKDIQQWVQKLETIGSASFKIITDTMDAFHS-KPIAIAISTLDQKDDT-SFKVETIFID 430
            +      +++++ +       +     ++ H    +A+A+ + +       F   +++ D
Sbjct: 471  SESRWLNFIEEVSSWNDVGVGVCLGKRNSMHGVTVVAVALCSRNGNPAFIPFDDSSVYGD 530

Query: 431  LSVHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS------ 482
            +       S     +   +E +   +    + H  KI  ++      L+    S      
Sbjct: 531  IDEEADFPSCTPADSIGIEERVRLFESVLASTH-RKIFFDLMATMRALNPPTFSSDLVVN 589

Query: 483  -MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
             +     I  +S++    R+S     ++ + L      +      ++ + K S  +V   
Sbjct: 590  RLSNCICIKTLSFLAH-FRTSDSEHPLSFQELIARVPSV-----RALVLKKSSSGRVAAS 643

Query: 542  AIENSNVILQLWLL-LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                 N+ L  WLL L  +L  EK + +    +    ++++++E TGI  D+     +  
Sbjct: 644  IYAFVNIRLYEWLLPLATRLSSEKSVSL----ELESTELLARLEATGIAFDRQAGHDLLQ 699

Query: 601  EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKT---TAQD 656
                 + SLE     L+   FN  SP ++ ++LF ++   P      +G  +    T ++
Sbjct: 700  RTKSEMSSLEAEGRRLASMPFNFDSPSEIANVLFVRMGIQPVSGCGGSGAPRRHYSTNKE 759

Query: 657  LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            + Q     + I   IL+WR+L+   S+   +L      R+           T TGR+ S+
Sbjct: 760  VLQRLAPKHRIAAIILKWRKLNTALSSSLQNLLRAC--RSNGRIHASFTTFTGTGRVQSV 817

Query: 717  EPNLQNIPIKT-DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
             PN+QN+          +R  F++PP   L+SADYSQ+ELR+LA ++K   L ++F N  
Sbjct: 818  HPNVQNVQKDALIDSLSVRSLFVAPPGFVLVSADYSQLELRVLAGLSKDEGLCKLFRNGG 877

Query: 776  DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
            D  + V           V P  R+  K + ++IIYG+    L  ++   +  A   I+ +
Sbjct: 878  DFFQTVTDRWNANTSIDV-PLDRQKVKQLCYAIIYGMGAITLGERIGTTKQNAQHLIESF 936

Query: 836  FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
            F  FP +  +++ T    R++    TI GRR       S   S R   ER AIN+ IQGS
Sbjct: 937  FKEFPKVRSWMDATLESCRRDACAVTILGRRRPLKCGESVVQSDRARAERQAINSTIQGS 996

Query: 896  AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
            A++I + A++ + K+L+D  L  ++++Q+HDE++ E+ E   +TA + I  +M  A    
Sbjct: 997  ASEIFKSALLKLEKNLKD--LDARIVMQVHDEVIVELNEACFSTAVERIESAMLNALP-- 1052

Query: 956  INLRVPLKVNIKVSNNWQ 973
                VPL V I    NW 
Sbjct: 1053 -EFPVPLSVKISSGTNWG 1069


>gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 536

 Score =  295 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 106/300 (35%), Positives = 157/300 (52%), Gaps = 10/300 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + +  + LVDG    YR F+A   L+    G PV A+ GF   L K L+           
Sbjct: 9   EPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDG-----DSV 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V+FD  A +FR+E Y  YKA R   PE    QL L++      G+  +E+ G+EADD++
Sbjct: 63  IVVFDAKAPSFRHEAYEGYKARRAPTPEDFPRQLALIKELVDLLGLVRLEVPGYEADDVL 122

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           A+    AEKEG+ V I++ DKDL QL+S    +        I    + +K G+ P++   
Sbjct: 123 ASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPE-GYLITPAWLWEKHGLRPDQWAD 181

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
            +ALTGD  DN+PG+ GIG KTA  LL+E+G+LE +L N  R++    RE IL + +  +
Sbjct: 182 YRALTGDESDNLPGVKGIGEKTARKLLEEWGSLERLLKNLDRLRPA-IREKILAHMDDLK 240

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           LS  L  +RTD+P+ +        + +  RL +FL+ LEF  L++         A    P
Sbjct: 241 LSWDLAKVRTDLPLEVDFAK--RREPDRERLRAFLERLEFGSLLHEFGLLESPKALEEAP 298



 Score =  138 bits (347), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 115/236 (48%), Gaps = 30/236 (12%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 330 GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 384

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           ++ +   +A+++     +E                      A E + +  +L+  L  +L
Sbjct: 385 TTPE--GVARRYGGEWTEE----------------------AGERAALSERLFANLWERL 420

Query: 561 I-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              E+LL +Y  +++P+  V++ ME TG+++D   L+ +S E+++ +  LE  ++ L+G 
Sbjct: 421 EGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 480

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
            FNL+S  QL  +LF +L  P+  KT+    ++T+  + +     +PI++ IL++R
Sbjct: 481 PFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYR 536


>gi|266624220|ref|ZP_06117155.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
 gi|288863948|gb|EFC96246.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
          Length = 277

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 153/283 (54%), Gaps = 12/283 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M KE  L L+DG S + RAFY  P L+   +GL  NA+ GF N+++K+L+  +    A H
Sbjct: 1   MDKE-KLVLIDGHSIMSRAFYGVPELTN-SEGLHTNAVYGFLNIMFKILEEEQ----ADH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV FD    TFR++++  YK  R  +PE L  Q+ L++    A  +P + + GFEADDI
Sbjct: 55  VAVAFDLKEPTFRHQMFEQYKGTRKPMPEELHEQVDLMKEVLGAMEVPILTMAGFEADDI 114

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGI 174
           + T    ++ +G  V ++S D+DL+QL      +                 E V  ++ +
Sbjct: 115 LGTVAKESQAKGVEVVVVSGDRDLLQLADEHIKIRIPKTSRGGTEIKDYYPEDVKNEYHV 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++ + ++AL GDS DNIPG+P IG KTAA +++ YG++EN   +   IK  + ++++ 
Sbjct: 175 TPKEFIDMKALMGDSSDNIPGVPSIGEKTAATIIEAYGSIENAYAHIEEIKPPRAKKSLE 234

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           E    A+LS++L  + T+  I    +    +    P    ++K
Sbjct: 235 ENYSLAQLSKELAAINTNCGIEFSYDDAKTDSLYTPAAYQYMK 277


>gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
          Length = 2215

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 130/542 (23%), Positives = 243/542 (44%), Gaps = 72/542 (13%)

Query: 480  GISMRG-FEDIMLMSYVLDSGR--SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
            G+ + G   D ++ + V+++G   +   +  + +++L     + +++   S P   +S  
Sbjct: 1699 GVYVSGPIFDTLIAAKVVEAGVMGTGFKLLQVVERFLGVLMDKRMQASDWSSP--HLSQE 1756

Query: 537  QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            Q+  +A  ++ V+L L   L+ KL    L  V   ++   +  V  ME+ G+QI+    K
Sbjct: 1757 QLL-YAARDAAVMLPLQQRLQRKLEAYDLQEVM-DVEMRCLRPVVAMELNGMQIEHARWK 1814

Query: 597  QVSAEISKN----LLSLEENIYDLSGEKFNLSSPKQLGDIL------------------- 633
            ++ A + K        L   ++ +     N +S KQ+ D L                   
Sbjct: 1815 ELEAHLRKEEVKARKRLAAELH-VDETTVNFNSQKQMLDALRAIGIPSPPPDRPASRSRG 1873

Query: 634  --------FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
                       L F   A+ +    K T+           P ++ + ++R+ +K  +T+ 
Sbjct: 1874 ARPSAFSEQRGLGFDQPAELEDTLLKDTSDGTLA-RLTQYPAVQALRDYRKAAKAITTFV 1932

Query: 686  DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS------ 739
            D LP HIN  T ++H         +GR +   PNLQ IP +    ++ R  F+       
Sbjct: 1933 DKLPQHINSVTGKIHCSLHQCGAGSGRFSCDSPNLQQIPRE----RRFRACFVPSAKVAG 1988

Query: 740  PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
             P  K I AD+SQIELRI A +A    + + ++   D+H++ A+ I       +S   R+
Sbjct: 1989 RPG-KFIIADFSQIELRIAADLACDERMIEAYQKGEDLHKLTASLILNKPASTLSKADRQ 2047

Query: 800  HAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
             AK +NF +IYG+S  R       A  +++   EA  +  +YF  + GI  + ++ K   
Sbjct: 2048 LAKAVNFGLIYGMSADRFRGYASSAYGVQMTPQEARAFHAKYFSSYAGITRWHQRQK--A 2105

Query: 854  RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
             Q     T  GRR  +D                ++N PIQG++ADIT+ +++ +   L  
Sbjct: 2106 EQPRETRTRAGRRALFDY----------FAFTKSLNYPIQGTSADITKESLVRLQDKL-- 2153

Query: 914  HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              L  ++++ +HDE++ EVPE++     +I++ +ME A    +   VP      ++++W 
Sbjct: 2154 APLGGRLVMCVHDEIIAEVPEDKAEEGLRILIETMEAAGNKFLRF-VPCVAEGAIADSWA 2212

Query: 974  EE 975
            ++
Sbjct: 2213 DK 2214



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 17/91 (18%)

Query: 391  SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               + T  +D + ++   + ++     D  +   +   + +S  +              L
Sbjct: 1529 GVDVETTGLDPYSARVRLLQLAL---PDFPTLLFDLFALPVSSPS--------------L 1571

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
              ++    +    K+ HN K+D   L   G+
Sbjct: 1572 RAVRLLLASPRIRKVFHNGKFDLCFLAAAGL 1602


>gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
 gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
          Length = 808

 Score =  293 bits (751), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 154/738 (20%), Positives = 276/738 (37%), Gaps = 136/738 (18%)

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
           +T     +    K +   I     T I++ K+ +   + LE         +   +D +  
Sbjct: 88  ETAASKEIRVHYKKAFEDIEEARTTGIIDDKEAESRSESLEK------AYLKTPLDPWQG 141

Query: 405 KPIAIAISTLDQKD---DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK-FFENE 460
           +   +++S    +      S KV  +F          S  ++   K +L  L +  F+NE
Sbjct: 142 EICTVSLSATAHESRVVPISHKVGQVFEP--------SMDRDEARKLVLDLLDEYLFKNE 193

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMS---------------------YVLDS 498
             LKI  N+ ++     +YG  + G   D ++M                      + L  
Sbjct: 194 KVLKIAVNLSFETKYAAKYGKYILGKVADPLIMWVRCLQIAAPQKINNPKKPTSGWGLKP 253

Query: 499 ------GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
                 G + +D +++ +K+      EI  S+   +            ++ E+S+  +Q 
Sbjct: 254 ATKHIFGVTMNDFSALLKKYKVNFFDEIDASKGEGL-----------LYSAEDSDYAVQH 302

Query: 553 WLLLRPKLIVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           +     ++  +  +      +++      +  ME  G+  D +L  Q   E         
Sbjct: 303 YEY-WSQIAAQIPRYEEWLHKIEMSFTRAIGLMEYWGMNWDPNLATQKKQEAEIMQEQAA 361

Query: 611 ENIYDLSGEKFNL-------SSPKQLGDILFTKLKFPSGAKTKTGQW------------- 650
           E I  ++ E FN+           ++  ++F  LK P     KTG               
Sbjct: 362 ERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFML 421

Query: 651 ----------------------------------------KTTAQDLEQINCGDNPIIKN 670
                                                   +   ++          +I  
Sbjct: 422 ENKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQ 481

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           + + ++ + + S++      ++N  + R+H  YS   T TGRL S  PN QN+P   +  
Sbjct: 482 LKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGYSPF-TETGRLNSFNPNGQNVPRPDNDE 540

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            KIR  F+  P K L   D+S  ELR++A  +    + ++F    D+HR  A+ + G + 
Sbjct: 541 FKIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSE 600

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRFPGIHE 844
            ++  + R  AK  NF I YG +   L         +R    E A  +      +  I E
Sbjct: 601 AEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRIPE 660

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           Y  K     R+ GYV+TI+G       INS     R   ER A N P+QGSAADI ++  
Sbjct: 661 YQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIMKKVQ 720

Query: 905 ISVHKSLEDHK-----LATKMLLQIHDELVFEV--PEEEITTASQIIVHSMEKACLPKIN 957
             +++S+   +      +  M+ QIHDE++FE+    E +    + I   ME+  +P   
Sbjct: 721 NEIYESIGKQEGVLAHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFP 780

Query: 958 LRVPLKVNIKVSNNWQEE 975
             VP++    V   W E+
Sbjct: 781 --VPIEAEGSVGYRWGEK 796


>gi|221108884|ref|XP_002170257.1| PREDICTED: similar to DNA polymerase theta, partial [Hydra
           magnipapillata]
          Length = 493

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 129/503 (25%), Positives = 227/503 (45%), Gaps = 95/503 (18%)

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            ++  A   +  +  L   +  +L  E L+  +  ++ P I  +  +EI GI       +
Sbjct: 15  DLRTCACIEAVTVYHLMEEMELRLKREDLIKSFVDIEMPTIRTLLVIEINGIGFSDIECE 74

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           ++   +   L S+++  Y LSG  F+LSSP  +   +  KL                   
Sbjct: 75  KLKEILKGKLDSIQQECYKLSGSVFSLSSPADVAREVLEKL------------------- 115

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK----RTQRVHTFYSLASTMTGR 712
                   + + K ILEWR+++   + +   +          +  R+ T      T TGR
Sbjct: 116 -----SKFHALPKLILEWRKINSTLTKFVYPVQRRKRSSDVLQMHRIFTEAI-YRTCTGR 169

Query: 713 LASLEPNLQNIPIKTDLG------------------------------------------ 730
           +   EPNLQN+P + D+                                           
Sbjct: 170 VTFSEPNLQNVPKEFDIKLSSLVVKSPPHQITGNKKHKRQLVSSTRPLLSQQKDKHIGSS 229

Query: 731 ------QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                   +R  F+   +  +++ADY Q+ELRI+AH+++   L +    S D+ + +AAE
Sbjct: 230 TTEMFTVSMRSTFVPFSSGVMVAADYEQLELRIIAHMSQDQILIKTLNESGDVFKSIAAE 289

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           I  +N+  V+   R+HAK I + IIYGI    L+ QL +  ++A++Y++++ +RF G+  
Sbjct: 290 INHINVVDVTTVQRQHAKQICYGIIYGIGIKALSHQLGVEENDASEYMEKFKNRFKGVKR 349

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +I+ T    R NG+V+T+ GR+ +   INS  ++ ++  ER A+N  IQGSAAD+ + AM
Sbjct: 350 FIQNTIEEARANGFVKTLGGRKRYLPAINSKITNDKSHAERQAVNTTIQGSAADLVKIAM 409

Query: 905 ISVHKSL--------------EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            ++   L              +       ++LQIHDEL++EV +E +    ++I   ME 
Sbjct: 410 NNIDIKLNKIFGNSCFNKLAEKSQPKGAYLVLQIHDELLYEVNKENVDIVIKLIRREMES 469

Query: 951 ACLPKINLRVPLKVNIKVSNNWQ 973
           A    I L V + V +K+ ++W 
Sbjct: 470 A----IILTVKMPVKVKIGSSWG 488


>gi|328724320|ref|XP_003248104.1| PREDICTED: DNA polymerase theta-like isoform 2 [Acyrthosiphon pisum]
          Length = 1583

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 137/532 (25%), Positives = 266/532 (50%), Gaps = 55/532 (10%)

Query: 450  LSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRG-FEDIMLMSYVLDSGRSSHDIAS 507
            +S LKK   N++ +    + K +  ++     I     F D  +  ++++ G+  + + +
Sbjct: 1098 VSLLKKLLSNKNLIVNITDAKLNYKIISQCCNIKPVCKFRDPFVADWLIN-GQPKNSLNN 1156

Query: 508  IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            + Q  L++         K                A+ N+ + L+L   LR +L    +  
Sbjct: 1157 LVQWNLNFQ-------GKIQ-----------TNDAVFNAFITLKLMSTLRHQLKQIYIYK 1198

Query: 568  VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
             ++ ++ P+  ++++ME+ G  +++  L +++  ++K + ++ E  ++ SG +FN+ S  
Sbjct: 1199 TFKDIEMPIQIILAKMELYGFGLNKKHLVELNDTVNKLMANISEQGFEQSGIRFNMQSTL 1258

Query: 628  QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
            +   +   KLK                      +   + +++ +  WR+LS +++T+ + 
Sbjct: 1259 EWAKV-KKKLKLT--------------------DSSSHLLVELVKNWRKLSCLRNTHINM 1297

Query: 688  LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI---RRAFISPPTKK 744
               ++  +  RVH   +  S  TGR++  EPNLQNIP    +  +I   R AF+    + 
Sbjct: 1298 ---YLTIQNDRVHCDSNTYS-NTGRISMHEPNLQNIPKDYVIENEILSLRSAFVPKSDQT 1353

Query: 745  LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            L+S D+ QIELR+LAH++K + L     +  D+   ++++   +   +V  ++R+  K +
Sbjct: 1354 LVSVDFCQIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPEIEVCDELRQKTKQV 1413

Query: 805  NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
             + ++YG+    L+  L I + EA   I  +   FPG+++Y  +     R  G V+T+ G
Sbjct: 1414 CYGMLYGMGTVTLSETLNITQDEAHKLISEFKRTFPGVNKYFNECVLQCRSMGLVKTLSG 1473

Query: 865  RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK--MLL 922
            R  H+ +INS    I++  ER AIN  IQGSAAD+T+ AMI V K +    L T+  +++
Sbjct: 1474 RIRHFPDINSEVPKIKSQVERQAINTIIQGSAADVTKMAMIKVDKIINQGVLNTRVHLVM 1533

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +HDEL+F+V    +  A   I+ +ME A    +NL VPL V ++  ++W +
Sbjct: 1534 HLHDELIFDVENTVLDEACSTIIKTMEAA----VNLCVPLPVKLRKGSSWGD 1581


>gi|328724318|ref|XP_003248103.1| PREDICTED: DNA polymerase theta-like isoform 1 [Acyrthosiphon pisum]
          Length = 1691

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 137/532 (25%), Positives = 266/532 (50%), Gaps = 55/532 (10%)

Query: 450  LSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRG-FEDIMLMSYVLDSGRSSHDIAS 507
            +S LKK   N++ +    + K +  ++     I     F D  +  ++++ G+  + + +
Sbjct: 1206 VSLLKKLLSNKNLIVNITDAKLNYKIISQCCNIKPVCKFRDPFVADWLIN-GQPKNSLNN 1264

Query: 508  IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            + Q  L++         K                A+ N+ + L+L   LR +L    +  
Sbjct: 1265 LVQWNLNFQ-------GKIQ-----------TNDAVFNAFITLKLMSTLRHQLKQIYIYK 1306

Query: 568  VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
             ++ ++ P+  ++++ME+ G  +++  L +++  ++K + ++ E  ++ SG +FN+ S  
Sbjct: 1307 TFKDIEMPIQIILAKMELYGFGLNKKHLVELNDTVNKLMANISEQGFEQSGIRFNMQSTL 1366

Query: 628  QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
            +   +   KLK                      +   + +++ +  WR+LS +++T+ + 
Sbjct: 1367 EWAKV-KKKLKLT--------------------DSSSHLLVELVKNWRKLSCLRNTHINM 1405

Query: 688  LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI---RRAFISPPTKK 744
               ++  +  RVH   +  S  TGR++  EPNLQNIP    +  +I   R AF+    + 
Sbjct: 1406 ---YLTIQNDRVHCDSNTYS-NTGRISMHEPNLQNIPKDYVIENEILSLRSAFVPKSDQT 1461

Query: 745  LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
            L+S D+ QIELR+LAH++K + L     +  D+   ++++   +   +V  ++R+  K +
Sbjct: 1462 LVSVDFCQIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPEIEVCDELRQKTKQV 1521

Query: 805  NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
             + ++YG+    L+  L I + EA   I  +   FPG+++Y  +     R  G V+T+ G
Sbjct: 1522 CYGMLYGMGTVTLSETLNITQDEAHKLISEFKRTFPGVNKYFNECVLQCRSMGLVKTLSG 1581

Query: 865  RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK--MLL 922
            R  H+ +INS    I++  ER AIN  IQGSAAD+T+ AMI V K +    L T+  +++
Sbjct: 1582 RIRHFPDINSEVPKIKSQVERQAINTIIQGSAADVTKMAMIKVDKIINQGVLNTRVHLVM 1641

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +HDEL+F+V    +  A   I+ +ME A    +NL VPL V ++  ++W +
Sbjct: 1642 HLHDELIFDVENTVLDEACSTIIKTMEAA----VNLCVPLPVKLRKGSSWGD 1689


>gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6]
 gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6]
          Length = 628

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 144/671 (21%), Positives = 260/671 (38%), Gaps = 107/671 (15%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            +   S T + +  + +  + ++E        +     D    +   I+++  +    ++
Sbjct: 7   RLEPQSITMVQSLPEWESILGEIEMAEFFGLNLTATGPDPLCHEIQRISLALPNAPSSST 66

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYG 480
                           D   +  L + I+  L    EN    K  H+ K+    +  R G
Sbjct: 67  VYTV------------DIADRPELKESIIGDLAGLLENGRIKKTLHDSKFVLSFIRARAG 114

Query: 481 ISMR--GFEDIMLMS-------YVLDSGRS----------SHDIASIAQKWLSYTRKEIL 521
             +      D+ML S       Y L    +           H +AS+A++ L     E  
Sbjct: 115 RKLNFCSIFDVMLASQICWSGYYYLTPSGNPKNPWTKRLVDHSLASLAERHLGIILDE-- 172

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
                            +    + +  +L L  +L   L    L  V   L+      + 
Sbjct: 173 -----------------EGCPAQGAAALLPLHDILADLLAKNDLQRVA-DLEFRAAIALV 214

Query: 582 QMEITGIQID----QDLLKQVSAEISKNLLSLEENIYD-------LSGEKF----NLSSP 626
           +MEI+GI +D    +DL+ Q   EI   +  +++             G++     N    
Sbjct: 215 EMEISGIGLDSSGARDLIDQEEDEIIDQIWRMQDEAERKGFVTVSFDGKRLCCYLNPDRQ 274

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           + +   L  +   P+  K         A+ L+ +        + ++ +R LS     + +
Sbjct: 275 EDVMAFLAKRGYRPANTK---------AEVLKSLAAAGCSFAEALMRYRHLS-YNLLFLN 324

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
                ++    RVH  Y    + TGR++S  PN Q IP + D    IRR F     K+ +
Sbjct: 325 KWLEKVHPLDGRVHPQYFQIPSSTGRISSRHPNAQQIPRRGDDAPAIRRLFRPAAGKRYV 384

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            AD S IELRI+A I+    + + F   +D+HR+ A+ I G   E+V+   R+ AK +NF
Sbjct: 385 KADLSNIELRIMARISGDEAMQEAFIKGIDLHRLTASRISGTPFEEVTDSQRQAAKAMNF 444

Query: 807 SIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR------ 854
            +IYG S   L  ++       I   E  + ++R+F  +PG+ E+ +   + +       
Sbjct: 445 LLIYGGSAKSLQWRILSDYGEFICLDETEERLERFFCSYPGVREWQKMQLSQMSYTMQHH 504

Query: 855 ----QNGY-------VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
                 G+         TI GRR  +    +  +     ++    N P QG+ AD+ +  
Sbjct: 505 FHNCVRGFFSLPLTATRTILGRRRIWPRFGAGIT----ASKFQMYNTPCQGTGADLIKLV 560

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M  V++ L D +   +++  IHDE++ EVPE+     +  +   ME+     +   VP+K
Sbjct: 561 MAEVYEKLSDEE--ARIIGSIHDEIILEVPEDRAEEYAARLKEIMERIGSEML-YPVPVK 617

Query: 964 VNIKVSNNWQE 974
              KV  N  E
Sbjct: 618 AEAKVMRNLAE 628


>gi|158285510|ref|XP_564726.3| AGAP007533-PA [Anopheles gambiae str. PEST]
 gi|157020027|gb|EAL41770.3| AGAP007533-PA [Anopheles gambiae str. PEST]
          Length = 1997

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 134/686 (19%), Positives = 274/686 (39%), Gaps = 79/686 (11%)

Query: 348  QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
                L   ++L Q   +  + T     +  +  V+K  TIGS    + T   +   S+  
Sbjct: 1324 ACKDLTTFEQLRQLVTDKTAITIAFGVEQEETSVKKA-TIGSHLRAVETRRTNNNASR-- 1380

Query: 408  AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK--EILSYLKKFFENEHFLKI 465
              + +  D        ++      S     D   + T     E + +++  F  E     
Sbjct: 1381 --SFTFDDNLYLAGMAIKLQDDTTSTVYYIDLQEEATAIDRAEKVRFIRTLFGREQLTIT 1438

Query: 466  GHNIKYDKLVLHRYG---------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL-SY 515
              ++K    +++R G         + +  F+D  +  ++L +   +  + ++ ++   + 
Sbjct: 1439 MLDVKDQLKIVYRSGLIPVAEGDEVLVATFQDPRVACWLLQTDAETLTLDAMIERHCPTL 1498

Query: 516  TRKEILKSRKSSIP-------IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
             + E+  + +  +        ++  S    ++       ++ +L   +  +L       +
Sbjct: 1499 KQAELRWTGQRWVTPKWTGHGLNHHSPFDAKQRTAVECLLVSELMACVSQRLATANGDSL 1558

Query: 569  ---YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLS 624
               +   + P+   ++  E+ G  +D++ L  + A++      + E    L+G ++ +  
Sbjct: 1559 SICFTSREMPVQLALASAEVIGFPVDRERLAALIAQLKACRDRIAEEARKLNGNQRLDFG 1618

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            S + +   L                 K      + +   ++P+   ++ +R++    +  
Sbjct: 1619 SSRAVAKALRLAGG---------NDRKQCRTVRQVLERLESPLAALVIAYRKIESNLTRT 1669

Query: 685  ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR--------- 735
             + L   +   + RVH   S   T TGR+   EPNLQ +     +  ++           
Sbjct: 1670 IEPLYRIVRPGSNRVHG-RSFCFTSTGRITMHEPNLQTVVKDFTVPARLTEGGGGGGDAP 1728

Query: 736  -----------AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--------- 775
                                L+SAD+ Q+EL IL H+++   L                 
Sbjct: 1729 PPLFSCRSTFACSDPDGGTVLLSADFCQLELSILTHLSQDPQLMAALGGGGNEAPGRTEA 1788

Query: 776  --DIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D+ R +AA       E  VS ++R   K I + +IYG+    +A +L++    A   +
Sbjct: 1789 RSDVFRALAARWNHYERESDVSDELRNRTKAIVYGVIYGMGVRAMAAELQLDEDAARTLM 1848

Query: 833  KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            +++   +P I  YIE+     RQ GY+ET+ GRR H   I S  +  R+  ER A+   I
Sbjct: 1849 EQFHATYPEIRRYIERVVRLTRQLGYIETLTGRRRHLPAITSENARERSEAERQAVCTTI 1908

Query: 893  QGSAADITRRAMISVHKSLEDHK-----LATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
            QGSAADI + A++ + ++L  ++        + +L +HDEL++EVP  ++   ++I+  S
Sbjct: 1909 QGSAADILKNAIVRMRRNLRKYRNVLELERIRFVLHMHDELIYEVPRSQLHKIAKILKSS 1968

Query: 948  MEKACLPKINLRVPLKVNIKVSNNWQ 973
            ME        L VPL+V +K   +W 
Sbjct: 1969 MENCA----KLSVPLRVKLKAGPSWG 1990


>gi|223999787|ref|XP_002289566.1| hypothetical protein THAPSDRAFT_262348 [Thalassiosira pseudonana
           CCMP1335]
 gi|220974774|gb|EED93103.1| hypothetical protein THAPSDRAFT_262348 [Thalassiosira pseudonana
           CCMP1335]
          Length = 249

 Score =  290 bits (743), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 114/250 (45%), Positives = 161/250 (64%), Gaps = 1/250 (0%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D S++I+R+++A P L R  DG P  A+ G C ML  LL +   +       + FD
Sbjct: 1   LLLIDASAYIFRSYHAIPPLHR-SDGTPTGALHGVCRMLQNLLLSRLLKGDRPRVVLAFD 59

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +    FR+EIYP+YKANR   PE L+PQ  LVR A +AFGI  +E +G+EADD+IAT   
Sbjct: 60  FKGPNFRHEIYPEYKANRGPCPEDLVPQFELVREAAEAFGIVQVEAEGYEADDVIATLAR 119

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A +EG  V I+S DKDLMQL++P   + D+   +++  + V++KW +   K+  + AL 
Sbjct: 120 QALEEGVDVDILSGDKDLMQLITPPVHMIDSTHFDRVTHDDVVEKWNVDSAKLGDVLALA 179

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPG+PGIG K AA+L+ EYG+L  ++  A  IKQKKRRE+++E AE   L R+L
Sbjct: 180 GDSSDNIPGVPGIGPKIAAMLINEYGSLSELISQAENIKQKKRRESLIENAEKVILFRQL 239

Query: 247 VMLRTDVPIT 256
           V L   +P+ 
Sbjct: 240 VTLNETIPVD 249


>gi|319651265|ref|ZP_08005395.1| hypothetical protein HMPREF1013_02007 [Bacillus sp. 2_A_57_CT2]
 gi|317397045|gb|EFV77753.1| hypothetical protein HMPREF1013_02007 [Bacillus sp. 2_A_57_CT2]
          Length = 296

 Score =  290 bits (743), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 99/294 (33%), Positives = 158/294 (53%), Gaps = 14/294 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +K+  L LVDG + ++RA++AT +  +      G+P N + GF       + +       
Sbjct: 3   EKKPSLLLVDGMALLFRAYFATAMSGQFMINSKGIPTNGVYGFVKHFLTAVSSF----SP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV +D  + TFR E++  YKANRP+ P  L+PQ  LV+   +AF +P I ++G+EAD
Sbjct: 59  THVAVCWDMGSKTFRTEMFDAYKANRPEAPIELVPQFDLVKEVVEAFDVPNIGLEGYEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGI 174
           D I T    A +E   V I++ D+D++QL+     +    K          E   ++ GI
Sbjct: 119 DCIGTIARKASQE-AEVLILTGDQDILQLLDDNISVILLQKGYGNYLVHTTETFYEEKGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++M+ L+A  GD+ DN PG+ GIG KTA  LLQ++ ++E +L N  ++  K +R  I 
Sbjct: 178 TPKQMIDLKAFMGDTSDNYPGVKGIGEKTALKLLQQFEHIEGVLENLEQL-TKGQRAKIE 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           +  E   LSR+L  ++ DVP+  PL  L     N  ++I     +EF  L   +
Sbjct: 237 QDLEMLHLSRQLAEIKCDVPVECPL-DLAQFTMNREKVIEKFTEIEFRGLHRFL 289


>gi|281339993|gb|EFB15577.1| hypothetical protein PANDA_004677 [Ailuropoda melanoleuca]
          Length = 769

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 228/470 (48%), Gaps = 45/470 (9%)

Query: 463 LKIGHNIK-YDKLVLHRYG--------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
             I  N K + + VL  +G        +   G  D  + ++++D G ++     +  K+L
Sbjct: 308 PVICFNAKDFVRTVLQFFGHDGSWKHVVHFVGL-DPRIAAWLIDPGDAAPSFEDLVAKYL 366

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHV 568
                E   S K +      S + V ++   N  ++ +L + L  +L         L  +
Sbjct: 367 -----ESSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKARRLTVYGLWQL 421

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           +  L+ P+I +++ ME   IQ+D++ +++ SA +   L  LE+  + ++GE+F ++S  Q
Sbjct: 422 FCTLELPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVAGEQFLITSNNQ 481

Query: 629 LGDILFTKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           L ++LF KLK P      +  +T   +  +T++ + +     +P+ K ILE+R++ K KS
Sbjct: 482 LREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYRRVHKTKS 541

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK---------------T 727
            + D L   + K +  + + ++   T+TGRL++  PN+Q I                   
Sbjct: 542 AFVDGLLACMRKGS--ISSTWNQTGTVTGRLSARHPNIQGISKHPIQITKPQNFKGVEGA 599

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEI 785
            L    R  F++P     ++AD+SQIELRILAH++    L ++F+ S   D+   + ++ 
Sbjct: 600 MLTISPRSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQW 659

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
            GV  E V+   R   K + +S +YG    RLA  L +   EAA +++ +  ++  + ++
Sbjct: 660 KGVPPEHVTHADREQTKKVVYSAVYGAGKERLAACLGVTVQEAAWFLESFLQKYKKVKDF 719

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           ++ T     Q GYV +I GRR     + +    +R   ER A+N  +QG+
Sbjct: 720 VQTTIAQCHQTGYVASIMGRRRPLPRVRAQDQQLRAQAERQAVNFVVQGT 769


>gi|289548726|ref|YP_003473714.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Thermocrinis albus DSM 14484]
 gi|289182343|gb|ADC89587.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Thermocrinis albus DSM 14484]
          Length = 290

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 106/289 (36%), Positives = 168/289 (58%), Gaps = 10/289 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+L+DGS+F+YR+F+A P LS K DG P  A+ GF   L  ++++ + +    + AV+FD
Sbjct: 4   LYLLDGSAFLYRSFFALPPLSTK-DGFPTGAVYGFLRALLSIIKSEKPQ----YMAVVFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +P+ T R + Y  YK NRP +P+ L  Q+P+++  T   GIP +E++G+EADDIIA  T+
Sbjct: 59  HPSPTVRKKEYAHYKTNRPTMPDPLKVQIPVIKELTVLLGIPLVEMEGYEADDIIAALTH 118

Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
            A +EGF V I S DKD++QLV +    + + +K E +D   V++K+G+PPEK+    AL
Sbjct: 119 RALEEGFKVRIYSPDKDILQLVKNEQVVVINPIKGEVLDERKVMEKFGVPPEKLADYLAL 178

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD +DN+ G+ G+G KTA  +L+ YG++ENIL           +       E    S  
Sbjct: 179 VGDKVDNVEGVKGVGPKTALKVLEAYGSVENILSQWDSF----IKAFPHASKENLERSYW 234

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           LV L     +++ ++ L ++D     L   L+ LE   ++  +   Y  
Sbjct: 235 LVKLHPPEEMSVDIQTLRIKDPRMDELRQMLQKLEIKSVLKDLEELYGT 283


>gi|253577228|ref|ZP_04854547.1| 5'-3' exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843342|gb|EES71371.1| 5'-3' exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 295

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/290 (34%), Positives = 153/290 (52%), Gaps = 14/290 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
             +N + LVDG + ++RA+YA   T  + R   G+P NA+ GF    W  +Q        
Sbjct: 6   SSKNTILLVDGMALMFRAYYASAATGYIRRTKAGVPTNAVYGFMRYFWDAVQKF----GP 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H A  +D  + TFR E + DYK NR   PE L+PQ  ++R    + GIP I   G+EAD
Sbjct: 62  THIACCWDLGSKTFRTEQFADYKGNRADAPEGLIPQFSMIREVMDSLGIPNISSPGYEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGI 174
           D I T      +E   V +++ D D++QLVS  T +    K          E ++++  +
Sbjct: 122 DCIGTLAARFGQE-MDVLVLTGDHDMLQLVSERTSVIIMKKGHGNYMVYTPEALMEEKQL 180

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE++V L+AL GD+ DN PG+ GIG KTA  L+QE+G++E IL N  ++  K  R  I 
Sbjct: 181 RPEQIVDLKALMGDTSDNYPGVRGIGEKTALKLVQEHGSVEGILANLDQL-SKSVRAKIE 239

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
              +   LSR+L  +R D+ +   +E     + N  ++IS  + LE   +
Sbjct: 240 ADLDMLHLSRQLAKIRCDIELECDVETCRF-ELNPAQVISKFEELEMASI 288


>gi|167392000|ref|XP_001739984.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165896117|gb|EDR23624.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 651

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 140/546 (25%), Positives = 243/546 (44%), Gaps = 56/546 (10%)

Query: 451 SYLKKFFENEHFLKIGHN----IKYDKL----VLHRYGISMRGFEDIMLMSYVLDSG--- 499
             LK+   N   L I HN    IK  +     VL  +  +     D  + +  +D G   
Sbjct: 137 DLLKEII-NSKRLIIVHNLIEEIKNYRNDIKCVLENFN-TNNRIFDTYIGASTIDPGSVD 194

Query: 500 -RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            ++ + I  + +  ++ +  E    +   + + ++                         
Sbjct: 195 GQTFNQICLVYEVIINKSTTEERLKQTRKLALKEVEI----------------------- 231

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEI-TGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            +    ++ V++  +  +  V+ +M      +ID  LL +    + +    +E     + 
Sbjct: 232 -MNKYNMIKVFQEQEMIIEGVLIEMNYCNEFKIDDKLLNEQRKVLIEEQNKIEIETKKII 290

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           G+  NLSSP+Q+   L        G K K         D + ++   +P  K +LE+R++
Sbjct: 291 GKTINLSSPEQVKKELIRYNIGIDGVKKK------ATTDKKILSQSGHPFAKLVLEYRKI 344

Query: 678 SKIKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT----DLGQ 731
           SK+ S   + +     K      + T +S  +  TGR+ S  PNLQ IP +         
Sbjct: 345 SKLLSGVIEQIRRCCIKTGDEYFIRTKWSQTAITTGRIQSKNPNLQQIPKQAFSLQQFVV 404

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
             R  FI+      ++ DY+QIELRILA+  K   L + F++++DIH+++AA     N+ 
Sbjct: 405 IPRDLFITHNNNTFVAIDYNQIELRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVN 464

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            ++   RR AKTI +  IYGI PF LA QL I   E+  +++ +  +FP   ++ E+   
Sbjct: 465 DITDGERRKAKTIVYGCIYGIGPFSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIIT 524

Query: 852 FVRQNGYVETIFGRRIHYDEI-NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
                G+V TI  RR   + + +S        ++R A+N+PIQG+AADI +  MI + K 
Sbjct: 525 NASTTGFVHTINNRRRRINNLTDSSDKKTLAESKRIAVNSPIQGTAADIIKMCMIEIFKK 584

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           +    L  ++LL IHDE+V EVP+  +      + + ME      + L VPL V ++   
Sbjct: 585 IHSTWLGVQLLLNIHDEIVLEVPDHLLDEVCVTLKYLMEH----IVQLEVPLVVTVETGK 640

Query: 971 NWQEEN 976
            W   +
Sbjct: 641 KWGSLH 646


>gi|315648998|ref|ZP_07902092.1| 5-3 exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus vortex V453]
 gi|315275679|gb|EFU39033.1| 5-3 exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus vortex V453]
          Length = 296

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/290 (35%), Positives = 151/290 (52%), Gaps = 14/290 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            ++  L LVDG + ++RA+YAT     + R   G+P NAI GF   +W  +   +     
Sbjct: 4   NQQPSLLLVDGMALLFRAYYATASSGYIRRTKAGIPTNAIYGFLRYMWDAIDKFQ----P 59

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H A  +D  + TFR E +  YK NRP+ P+ L+PQ  LVR  T+  GIP + + G+EAD
Sbjct: 60  THVACCWDMGSKTFRTEQFASYKGNRPEAPDDLIPQFSLVRDVTECLGIPNLGVVGYEAD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGI 174
           D I T           V I+S D DL+QLVS +T +    K          E +  + G+
Sbjct: 120 DCIGTLARRYSDH-MNVMILSGDHDLLQLVSDSTSVIIMKKGHGNYMHYTPETLYAEKGL 178

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ ++ L GD+ DN PG+ GIG KTA  L+QEY ++E IL N   +  K  R  I 
Sbjct: 179 TPRQVIDVKGLMGDTSDNYPGVRGIGEKTALKLIQEYESVEGILENLESL-AKGVRTKIE 237

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
              E   LSR L  +  +VP+   L  L L + +  R ++ L+ LE   L
Sbjct: 238 ADLEMLHLSRALAEIHCEVPMECEL-DLCLLNVDHERALTKLEELEMKSL 286


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 141/631 (22%), Positives = 263/631 (41%), Gaps = 86/631 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  I     +++  ++LE          T        + + +                 
Sbjct: 2   TFEYITGKTGLKEICKRLEKSPYLYLDTETTG---NRIRLVQLG---------------- 42

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                     + +   +      ++ L++    +    IGHN+K+D   L  Y I     
Sbjct: 43  --------DDEKTYVIDLYEIHDITPLRELISEKGV--IGHNLKFDLHYLMNYQIEPLAT 92

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D M+ S++L  G   H +  +    L YT   + KS + S     +      ++A ++ 
Sbjct: 93  FDTMIASFLL--GYERHSLNHLVGNLLGYT---LDKSYQLSDWGAPVLSDAQLKYAAKDV 147

Query: 547 NVILQLWLLLRPKLIVE-----------------KLLHVYERLDKPMIDVVSQMEITGIQ 589
           +V+ +L+  LR  L                     L      ++   +  V+++E  G+ 
Sbjct: 148 DVLRELFPKLRDMLNELEGERGEELLKTRTARIFGLKSPVAIVEMAFVKEVAKLERNGLP 207

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D + L+    +I +      +    L   + +  SPKQ+G +L +K K  +  +T+ G 
Sbjct: 208 VDIETLESTLKDIERKTQKKVQEF--LIKFRVDPFSPKQVGQLLTSKYKL-NLPRTQKGN 264

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             T  + L          ++ +LE R+L K+   + +   N    +  R++  +     +
Sbjct: 265 VSTDDKVLSSYA--HVEPVRLLLEIRKLKKLSDKFKEIKENL---KGDRLYPEFKQIGAV 319

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGR++SL+PN+QN+P +       R  F +P     + AD+SQIELRI A       + +
Sbjct: 320 TGRMSSLKPNVQNVPREE------RAIFKAPEGNTFVIADFSQIELRIAAEYVNEELMIR 373

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRI 823
            F    D+HR  A+ + G   E+++ + R+ AK INF +IYGIS   LA        + I
Sbjct: 374 AFREGKDLHRYTASLVLGKREEEITKEERQLAKAINFGLIYGISAKGLAEYARTGYGVEI 433

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG--YVETIFGRRIHYDEINSPKSSIRN 881
              EA  +  R+F  F     + EK K  +++ G     T+ GRR      N        
Sbjct: 434 SEEEAETFRNRFFKNFKAFKLWHEKVKKELKEKGVFRGRTLLGRRFTATTFND------- 486

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
                A+N PIQG+ AD+ + A++      +  KL  K++  +HDE+V E  +E      
Sbjct: 487 -----AVNYPIQGTGADLLKLAVLLFDAEAKKKKLDAKLVNLVHDEIVVECRKEVANQVK 541

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +++  +M++A    +  +VP++V   ++  W
Sbjct: 542 EVLEKAMKQAGKIILK-KVPVEVESVINERW 571


>gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
 gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
          Length = 643

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 131/529 (24%), Positives = 254/529 (48%), Gaps = 56/529 (10%)

Query: 488 DIMLMSYVLDSGRSS--HDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           D+ +++++LDS   S  +DI  +   +   +S+ R     S + S P   + D  + E  
Sbjct: 122 DLAVLAWILDSAAGSACYDIDYLKSIYGNDMSHKRPREATSLQESHPWRMLVDHDLPE-- 179

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
             +S++ +     L  ++       V    + P+  +++ M +TG   D  ++++  +++
Sbjct: 180 --SSDLAVA----LSSRVESHGQTAVALFQELPVARLLTLMSVTGAPFDHSIMQRWRSDL 233

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
              +  LE     L  ++  ++SP Q+  +L+  L     A  ++   ++T  ++  +  
Sbjct: 234 EVTVAKLEREAQALVKKEVLMTSPAQVAALLYDDLGLQPPAGRRS---RSTGDEVLSMMV 290

Query: 663 GDNPIIKNILEWRQLSKIKSTYADS------------LPNHINKRT-----------QRV 699
             +P++  I + RQ++K+ +TY D+            L  +   +             R+
Sbjct: 291 DQHPVVSIIRKHRQVAKLITTYVDTIRSLPESSPKPGLLEYFRPQNGVSESCNFLGKNRL 350

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK----IRRAFISP--PTKKLISADYSQI 753
           +T ++   T+TGRL+S  PNLQNIP   +        +R+AFISP   +  L+S DY Q+
Sbjct: 351 YTVWNQTMTVTGRLSSSNPNLQNIPRSHEFEDLGVISLRKAFISPILDSHCLVSVDYRQV 410

Query: 754 ELRILAHIAKITPLYQVFE-NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           E+R+LAH      L + F  +  DI+  +AA I       V+ + R  AK    +++YG 
Sbjct: 411 EIRVLAHFVGPGALRRSFSVDGADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVYGS 470

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
               LA Q+ +  + A  + +++ + FP +  ++ +  +  +   YVETI  RR    +I
Sbjct: 471 GIHLLARQMGVTTTVAQGFKRQFNYAFPELERWMVRVWHAAKGKKYVETICKRRR---KI 527

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA---TKMLLQIHDELV 929
                 + +  +R  IN+ IQGSAADI + AM+ +  +L++ +      ++LL IHDE V
Sbjct: 528 ELDGGELTSEAKRFCINSIIQGSAADIMKSAMVQIAHALDEAQWKRGRPQLLLSIHDEFV 587

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKIN----LRVPLKVNIKVSNNWQE 974
               +E++    ++++  M    LP  +      VPL+V++K  +NW +
Sbjct: 588 LSCHQEDVERLGRLLLREMRNPALPGHDEDDPFSVPLEVSMKYGHNWAD 636


>gi|281204189|gb|EFA78385.1| DNA-directed DNA polymerase I [Polysphondylium pallidum PN500]
          Length = 1359

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 148/635 (23%), Positives = 272/635 (42%), Gaps = 82/635 (12%)

Query: 405  KPIAIAIST--LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
            +PI I++     D +D T+  +      LS+  +      +      L+++ +  E+++ 
Sbjct: 725  EPIGISLWIPMADNRDWTNGSMSIAKYHLSLVNNLGGVPNDK-----LAFMVRLLEDDNI 779

Query: 463  LKIGHNIKYDKLVLHRYGISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
             K+  N K     +      M+     D  + ++V ++     ++      +L +   E 
Sbjct: 780  KKVSFNAKESIKPMLWLNQWMQPSRLIDPKIAAWVHNTEAE--EMKGFELTFLYHHLVE- 836

Query: 521  LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK-LIVEKLLHVYERL------- 572
             K  +  I +  I + Q  +   +   +       + P  L    L+ +           
Sbjct: 837  NKDYEKQINLPMIKELQSLDSNKDLVIINNDNNFSMFPNDLRNSSLVMIALEQLLLQLNL 896

Query: 573  ------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF--NLS 624
                  +  ++ ++S+ME+ GI    +  +  S+ +   + +L+        +    +LS
Sbjct: 897  QAPFYQEMRVVPILSKMELHGITFSPETFRTCSSNLQTYVQNLQGKWNTEFKKDSAKSLS 956

Query: 625  SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
            SP Q+ + L T+ K      + TG+              D   IK+ILE+R  +KI +TY
Sbjct: 957  SPVQIKEFLLTQYKITV---SNTGKQTL---VDLIKKYPDVQYIKDILEYRHCNKILTTY 1010

Query: 685  ADSLPNHI-NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-------TDLGQ----- 731
                 + + +++   +H  +    T TGRL+  +PNLQN+P          + G      
Sbjct: 1011 VQPYLDIVKDEQAPSIHCQWIHTGTATGRLSCKQPNLQNLPRNALNVNYNDEDGDSELAD 1070

Query: 732  --------------------KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
                                 +R  F +     LI  DYSQIELRI+ H +K   L + F
Sbjct: 1071 FNIDEDEDDNMGANNQTISLNVRDGFEAREGYTLIGLDYSQIELRIMTHYSKDQKLEEYF 1130

Query: 772  ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
            +N +D+ + +A    G  ++KV+P  R   K I + I+YGI P  L+  L++ +  A+ +
Sbjct: 1131 KNEVDVFKHMAHHYLGKPVDKVTPTEREQTKRIIYGIMYGIGPHSLSQILKVSKERASQF 1190

Query: 832  IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            I  + ++F  I  YIE+ K  +R   +++TI GRR     +NS   +  +   R  +N+ 
Sbjct: 1191 INDFLNKFQSIRNYIEEEKKKIRLKKFIKTIAGRRRLLPHVNSQDPNQSHRALRQTVNSI 1250

Query: 892  IQGSAADITRRAMISVHKSLE---------DHKLATKMLLQIHDELVFEVPE----EEIT 938
            IQGSA+DI + AM ++H  L          D     ++LLQIHDEL++E+P+    ++ +
Sbjct: 1251 IQGSASDIIKEAMFNIHVYLSQLSKEYKSLDPHNDPRLLLQIHDELIYEIPDAMLNDKES 1310

Query: 939  TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                 I   ME       +L VP+ V +    +W 
Sbjct: 1311 EVCINIKRIMESVYQD--DLTVPIAVTMSKGKSWG 1343


>gi|261408888|ref|YP_003245129.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Paenibacillus sp. Y412MC10]
 gi|261285351|gb|ACX67322.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus sp. Y412MC10]
          Length = 298

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/290 (34%), Positives = 149/290 (51%), Gaps = 14/290 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
             +  L LVDG + ++RA+YAT     + R   G+P NAI GF   +W  +   +     
Sbjct: 6   NPQPSLMLVDGMALLFRAYYATASSGYIRRTKAGVPTNAIYGFLRYMWDAIDKFQ----P 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H A  +D  + TFR E +  YK NRP+ P+ L+PQ  LVR  T+  GIP + + G+EAD
Sbjct: 62  THVACCWDMGSKTFRTEQFASYKGNRPEAPDDLVPQFSLVRDVTECLGIPNLGVVGYEAD 121

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGI 174
           D I T       +   V I+S D DL+QLV+ +T +    K          E +  + G+
Sbjct: 122 DCIGTLARRF-GDSMNVMILSGDHDLLQLVNDSTSVIIMKKGHGNYMHYTPETLYAEKGL 180

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P +++ ++ L GD+ DN PG+ GIG KTA  L+QEY ++E IL N   +  K  R  I 
Sbjct: 181 SPRQVIDVKGLMGDTSDNYPGVRGIGEKTAVKLIQEYESVEGILANLDSL-TKGVRTKIE 239

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
              E   LSR L  +  +VP+   L  L     +  R ++ L+ LE   L
Sbjct: 240 ADLEMLHLSRALAEIHCEVPMECEL-DLCRLSVDHERALTKLEELEMKSL 288


>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
          Length = 2579

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 131/532 (24%), Positives = 244/532 (45%), Gaps = 64/532 (12%)

Query: 485  GFEDIMLMSYVLDSG--RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
               D ++ + V+++G  R+   +  + +++L     + +++   S P   +S  Q+  +A
Sbjct: 2070 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSP--HLSQEQLL-YA 2126

Query: 543  IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
              ++ V+L L   L+ KL    L  V   ++   +  V  ME+ G+QID    K++ A +
Sbjct: 2127 ARDAAVLLPLQQRLQQKLEAFDLQEVM-DVEMRCLRPVVAMELNGMQIDHARWKELEAHL 2185

Query: 603  SKNLLSLEEN-IYDLSGEK--FNLSSPKQLGDILFT-KLKFPSGAKTKT----------- 647
             +      +    +L  ++   N +S KQ+ D L    +  P   + ++           
Sbjct: 2186 RREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPESRTRGSRFSFSE 2245

Query: 648  ---GQWKTTAQDLEQINCG----------DNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
               G  K  A+  +Q+               P ++ + ++R+ +K  +T+ D LP HIN 
Sbjct: 2246 LPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINS 2305

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-----KKLISAD 749
             T ++H         +GR +   PNLQ IP +    ++ R  F+   T      K I AD
Sbjct: 2306 VTGKIHCSLHQCGAGSGRFSCDSPNLQQIPRE----RRFRACFVPSKTVAGRPGKFIIAD 2361

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
            +SQIELRI A +A    + + +    D+HR+ A+ I       +S   R+ AK +NF +I
Sbjct: 2362 FSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLI 2421

Query: 810  YGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            YG+S  R       A  + +   EA D+  +YF  +PGI  +  + K    Q     T  
Sbjct: 2422 YGMSADRFRGYASSAYGVEMSLQEARDFHAKYFSSYPGITRWHRRQK--AEQPRETRTRA 2479

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            GRR  ++                ++N PIQG++ADIT+ +++ +   L    L  ++++ 
Sbjct: 2480 GRRALFEY----------FAFTKSLNYPIQGTSADITKESLVQLQHKL--APLGGRLVMC 2527

Query: 924  IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            +HDE++ EVPEE+     ++++ +ME A    +   VP      ++++W ++
Sbjct: 2528 VHDEIIAEVPEEKAEEGLRVLIDTMEAAGNKYLRF-VPCVAEGAIADSWADK 2578



 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 17/91 (18%)

Query: 391  SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               + T  +D F ++   + ++     D  +   +   + +S                 L
Sbjct: 1877 GVDVETTGLDPFSARIRLLQLAL---PDFPALLFDLFALPVSSP--------------AL 1919

Query: 451  SYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
              ++    +    K+ HN ++D   L   G+
Sbjct: 1920 RPVRLLLASPRIRKVFHNGQFDLCFLAAAGL 1950


>gi|23336563|ref|ZP_00121774.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI)
           [Bifidobacterium longum DJO10A]
          Length = 269

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 89/261 (34%), Positives = 136/261 (52%), Gaps = 10/261 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              L +VDG S  +RAF+A P+ +     G   NA+ GF  ML +++   + +    H  
Sbjct: 11  NETLLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLG 66

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFRNE+ P YK  R   PE LL QLPL++    A G+  IE  GFE DD+IA
Sbjct: 67  VAFDVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIA 126

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           T   + +K G+   ++S D+D  QLV     +          + +  + +I K+ + P +
Sbjct: 127 TLATMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKYKVTPAQ 186

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
              L AL G++ DNIPG+PG+G   AA  + ++G+L+ I  +A  I  KK  E++    +
Sbjct: 187 YPDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANID 245

Query: 239 TARLSRKLVMLRTDVPITIPL 259
             +L+RK+  L  DV     +
Sbjct: 246 QVKLNRKVNALVRDVDHQASI 266


>gi|332295728|ref|YP_004437651.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178831|gb|AEE14520.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 296

 Score =  288 bits (736), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 105/294 (35%), Positives = 167/294 (56%), Gaps = 12/294 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  + L+D  S IYRA+YA P L+    G+P NA+ GF N+L KL++     +      V
Sbjct: 8   EKTICLIDAHSVIYRAYYALPELTSSA-GIPTNALYGFINILLKLIKEEDPYT----IFV 62

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD P  TFR+E + +YKA+RPK+PE L+ Q+ L++   +   I   E+ G+E+DD++A+
Sbjct: 63  AFDSPEKTFRHESFKEYKASRPKMPESLISQVLLIKEFLKLMNIRFYEVPGYESDDLVAS 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                EK+ + V I++ D DL+QLVS    +    K     EK D++  + K+GI P ++
Sbjct: 123 MAKQIEKKDYDVLILTGDFDLLQLVSERVKVLIMKKGISDVEKYDLDKFLTKFGIRPNQI 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
             ++AL+GDS D IPG+ GIG KTA  +L+++  +E +L N  R K K+ RE I E  E 
Sbjct: 183 ADMKALSGDSSDEIPGVKGIGKKTAIEILRQFNTVEELLKNIDRFKNKRYRELIYENKEK 242

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDC---NGPRLISFLKALEFTKLINRVAT 290
               + + +L TDV + I +E    E+        L  FL++L+   +  ++ +
Sbjct: 243 ILFYKSITLLDTDVSLEIEIEEKPWENLSYEQRESLKRFLESLDLKSIQKKLFS 296


>gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
 gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
          Length = 682

 Score =  288 bits (736), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 133/647 (20%), Positives = 249/647 (38%), Gaps = 80/647 (12%)

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396
             +     +T   +         Q P    +   I    D++    +L         + T
Sbjct: 97  AVNAAQGAKTVAAIVSVGDSTSPQTPQTPQASQLITRPSDLEALPPRLMAAPVLGLDLET 156

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
             +D    +P  +++ST                                    L  L+  
Sbjct: 157 TGLDPHQDRPRLLSLSTE---------------------RDTYLVDLFALPHALEALRPL 195

Query: 457 FENEHFLK-IGHNIKYDKLVLHRYGISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           FE +     +GHN+K+D   L + G+   G       L   V+ +      +A +     
Sbjct: 196 FEAKTGPVLVGHNLKFDLAFLLKAGLWPEGRRLWCTGLAHQVIHARSRMPALADLVPG-- 253

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
                 + K  ++S     IS++Q+  +A  ++ V+L L+   + +     +  V E ++
Sbjct: 254 ------LDKRLQTSDWSGPISEAQLA-YAARDTQVLLPLYHQQQEESRRLGIGKVLE-IE 305

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
              +  V+ M + G+  + +     + E    L +  +        + N  SPKQ+ + L
Sbjct: 306 SRALPAVAWMGLMGVPFNPERWLATAKE--AELSA--QEALKRLDWRTNWDSPKQVLEAL 361

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
                       + G   +  ++       ++P +  +L +R+  K +STY  +   +++
Sbjct: 362 -----------RRAGIELSDTREETLSRHREHPTVAALLAYREHRKRQSTYGAAWLENLH 410

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             T R+H  +      +GR++   PNLQ +P +       R  F +P  + LI ADYSQI
Sbjct: 411 PLTGRIHPSWQQIGAESGRMSCSRPNLQQVPRE----PAYRACFQAPGGRVLIKADYSQI 466

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR+ A IA    + + FE   D+H + A  + G    + S + R+ AK +NF ++YG+ 
Sbjct: 467 ELRLAAQIAGEKRMLEAFEQGEDLHTLTARLVTGKA--EPSREDRQLAKALNFGLLYGMG 524

Query: 814 PFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN-FVRQNGYVETIFGRR 866
              L         L +   EA    + +F  +PG+  +        V     V T+ GRR
Sbjct: 525 SEGLRTYARANYGLELSPQEAEALREAFFRAYPGLRAWHRHQPEGEVE----VRTLAGRR 580

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
                                +N P+QGS AD  +  +  +++S          +L +HD
Sbjct: 581 RVTG------------RYTEKLNTPVQGSGADGLKLTLALLYES-RQKAPGCFPVLAVHD 627

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           E+V E P + ++ A   +  SM +     +  +VP+ V + V  +W 
Sbjct: 628 EIVIEAPADGVSAAYAWLTRSMREGMEAILT-KVPVLVEVGVCEDWG 673


>gi|300122531|emb|CBK23101.2| unnamed protein product [Blastocystis hominis]
          Length = 437

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 228/440 (51%), Gaps = 36/440 (8%)

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           +     L+ Y  ++  ++ +++ M+ TG+ +D   L++    I   L  LE+    L G 
Sbjct: 1   MASPSELNSYWNIELRLLPLLAHMDATGVNVDSAALQRNKMVIDPLLKDLEQKAEALVGH 60

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
              + S KQ+ ++L+ +LK  +    +      + + + Q     +P    ++E+R+LSK
Sbjct: 61  PILMWSSKQVCEVLYDELKLEAPKGNR-----VSTESVLQTMADKHPFPGLVIEYRRLSK 115

Query: 680 IKSTYADSLPN------HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT-----D 728
             STY D L          +  T+ +++ ++  +T TGRL++  PN+Q +P ++     +
Sbjct: 116 QMSTYIDGLEKEFVSVPFRSTETKLIYSTWNQMATGTGRLSTAAPNMQTLPKRSLERLSN 175

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIF 786
           L   IR AF++ P ++LIS DY QIE+R+ AH +    L  +F +    DI+ M+A+ I 
Sbjct: 176 LDVDIRGAFVALPNRRLISVDYRQIEMRVFAHCSHDIALINLFSSGQNSDIYTMIASMIH 235

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
            V ++ V+ + R  AK I   + YG+    +A++L+IP   A        +RF G+ +++
Sbjct: 236 KVEVKDVTQKFRDEAKVITLGLCYGMGVESMASKLKIPILTATQLKNSILNRFKGVLQFM 295

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           + T +  R+  +VET+ GRR ++   +S    +    +R A+N+ IQGSAAD+ + AMI 
Sbjct: 296 KNTISSARKTHFVETLSGRRRYFKAKDSGGEGL-AHIDRQAVNSVIQGSAADLLKCAMIL 354

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPE-EEI-TTASQIIVHS-----------MEKACL 953
           + K L +  L ++++LQIHDELV + P+ +E+      ++              M KA  
Sbjct: 355 LWKPLSE--LDSEIILQIHDELVIDCPDSDEVCEKVIALLNQVMCVESKKMLQDMCKANH 412

Query: 954 PKIN--LRVPLKVNIKVSNN 971
           P+I     V L+ ++ +  N
Sbjct: 413 PEIQYDFDVLLEQSVNIGKN 432


>gi|99035969|ref|ZP_01315013.1| hypothetical protein Wendoof_01000149 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 529

 Score =  287 bits (735), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 175/302 (57%), Gaps = 8/302 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE    ++DG  F++RA+Y  P L     G+P+  + GF NM+ K + +S       +  
Sbjct: 2   KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHS------DYLT 54

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +  D     FR+ +YP+YKANR   PE L PQ  ++R A +AF +   EI+G+EADDIIA
Sbjct: 55  IALDAGKKNFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114

Query: 123 TYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T     A  + F V ++S+DKDL QL++    ++D +K   ID + VI+K+G+   K++ 
Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L +LTGD+ DNIPG+PGIG KTAA LL E+ +L NI+ N   I+Q + R  + E+ E A 
Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           +SR+L+ L   V +   +    +   N  +L+SFLK  EF  LI +V   +    ++ E 
Sbjct: 235 ISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKVEKLFSYSGSSTEE 294

Query: 302 VV 303
            +
Sbjct: 295 KI 296



 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 24/231 (10%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           +     + K    + +E   + LS   S     +    ++ L  +     +   LKI HN
Sbjct: 307 LEHCRYEGKIAIHYHLENNVLSLSYSESNIFYIEQDSIQDALIIINLTLLSNGVLKIIHN 366

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
           IK  + +       +   +D+M+MSY LD+G+  H I +I    LS   +          
Sbjct: 367 IKEIRKIFPAIEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLSENAE---------- 416

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                         I ++  ++ +   L+ +L  EKLL +YER DKP++ V+  ME  GI
Sbjct: 417 --------------IFSAKTLIAIHEKLKQRLFQEKLLTIYERFDKPLMKVIFDMEKNGI 462

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
            ++   L+++S +  + +  LE+ IY+L+GE+FN++SPKQL D+LF K+  
Sbjct: 463 LLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGL 513


>gi|47215759|emb|CAG05770.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 462

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/408 (26%), Positives = 196/408 (48%), Gaps = 30/408 (7%)

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            L  +Y  ++  MI V++ ME   I +D++ LK+ S  +   +  LE+  +  +GE F +
Sbjct: 9   GLWDLYTDMELNMIPVLAVMESHHIHVDKEALKRTSDLLGTKMKQLEQEAHRAAGEIFLI 68

Query: 624 SSPKQLGDILFTKLKF------PSGAKTKTGQWKTTAQDLEQIN-----CGDNPIIKNIL 672
           +S  QL  +LF +L+           KT   Q  T+   ++ +         +P+ K IL
Sbjct: 69  TSNTQLRAVLFERLRLHQQCENKKLPKTLNKQQSTSEAAVQYLKRLLQLQDLHPLPKIIL 128

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT----D 728
           E+RQ+ KIKST  D + + +  +  +      L  T   R+   E  +  +  +      
Sbjct: 129 EYRQVHKIKSTSVDGILSCMRNKNFQALPRQPLQITKQQRVQGKEEVVVKVHPREMFIPQ 188

Query: 729 LGQKIRRA--------------FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
            G     A              FI       ++AD+ Q+ELR+LAH +    L ++F + 
Sbjct: 189 EGWTFVAAGKEEVVVKVHPREMFIPQEGWTFVAADFCQVELRLLAHFSSDPELLRIFNHP 248

Query: 775 L-DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+  M+A++  G++  +V+ + R HAK I +S++YG    RL+  L +   +A+ +  
Sbjct: 249 QSDVFTMLASQWKGLSQSEVTSEDREHAKRIVYSVVYGAGRERLSGILGVSAKQASQFQD 308

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
            +   +  +  +I+KT     Q G V ++ GRR     I+    ++R   ER A+N  +Q
Sbjct: 309 SFLRAYKDVQAFIQKTIQQCHQQGCVLSLMGRRRTLPNIHLSDWAVRMQAERQAVNFVVQ 368

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           GSAAD+ + AMI +   +     + ++L Q+HDEL+FEV + ++   +
Sbjct: 369 GSAADLCKMAMIRIFNLVSSSSCSARLLAQLHDELLFEVEDNQVHRFA 416


>gi|304404902|ref|ZP_07386562.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Paenibacillus
           curdlanolyticus YK9]
 gi|304345781|gb|EFM11615.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Paenibacillus
           curdlanolyticus YK9]
          Length = 294

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 147/297 (49%), Gaps = 15/297 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           MQ  N + +VDG + ++RAFYAT     + +   G+P NA+ GF   L+  +        
Sbjct: 1   MQTSNKVLIVDGMAVLFRAFYATSYSGYIRKTSTGIPTNAVYGFIQYLYDAINTFN---- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH    +D  + TFR E YP YK NR + P  L+PQ  LV+      GIP I I G+EA
Sbjct: 57  PSHVVCCWDMGSKTFRTEQYPAYKGNRGEPPNELIPQFDLVKEVVAEMGIPNIGIVGYEA 116

Query: 118 DDIIATYTYI--AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKK 171
           DD I T       +     V I++ D D++QLVS    +    K +      DIE ++ +
Sbjct: 117 DDCIGTLAAKLTVDHPDSEVLILTGDHDMLQLVSENVKVVIMKKGKLNYAIYDIELLMTE 176

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
             + P +++ ++   GD+ DN PG+ GIG K+A  LL EYG++E +L N  ++  K  R 
Sbjct: 177 KQLTPLQVIDIKGFMGDTSDNYPGVKGIGEKSALKLLLEYGSIEGVLDNLEQL-PKGVRS 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            I    +   LSR L  +R DVPIT  L    + +          + LEF  L   +
Sbjct: 236 KIEANLDMLHLSRDLATIRLDVPITYELAE-CVWEVQLDAATRKFEELEFGGLTKLL 291


>gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 242

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 154/242 (63%), Gaps = 5/242 (2%)

Query: 733 IRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           IR AF+      +L++ADYSQIE+RI+AH+++   L + F    D+H  VA+  F V I+
Sbjct: 1   IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           +V+P++RR  K +++ + YG+S + +A QL+I   EA   +++YF RF G+ +Y+    +
Sbjct: 61  EVTPELRRRVKAMSYGLAYGLSAYGVAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVD 120

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
             R++GY  T+ GRR +  E++S    +R   ERAA+NAPIQGSAADI + AMI+V +++
Sbjct: 121 QARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAI 180

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
           +D  L +++LLQ+HDEL+FEV E E     Q++   M  A      L VPL+V++    +
Sbjct: 181 KDAGLRSRILLQVHDELLFEVSEGERGELEQLVREHMGNA----YPLDVPLEVSVGYGRS 236

Query: 972 WQ 973
           W 
Sbjct: 237 WD 238


>gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01]
 gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01]
          Length = 682

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 136/608 (22%), Positives = 246/608 (40%), Gaps = 84/608 (13%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
           + +  L         + T  +D   S+P  ++++              +  DL       
Sbjct: 139 ELLDLLMRQPVLGVDLETTGLDPHTSRPRLLSLA---------MPGAVVVFDLFGVP--- 186

Query: 439 STGKNTLTKEILSYLKKFFENEHFLK-IGHNIKYDKLVLHRYGISM---RGFEDIMLMSY 494
                      L      F  E     +GHN+K+D L L + G+     +   D  L   
Sbjct: 187 -----------LEVFYPLFSREEGPLLVGHNLKFDLLFLLKAGVWRASGKRLWDTGLAHQ 235

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           VL +      +  +A          + K+ ++S     +S  QV  +A  ++ V L L+ 
Sbjct: 236 VLHAQARMPALKDLAPG--------LDKTLQTSDWGGPLSSEQVA-YAGLDAAVPLVLYR 286

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
             R +    +L  V E +++  +  V+ ME+ G+    +L ++ + E  +   +L   + 
Sbjct: 287 EQRERARTLRLEKVLE-VERRALPAVAWMELKGVPFAPELWEEAAREAEREAEALRGEL- 344

Query: 615 DLSGEKF--NLSSPKQLGDILF-TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
                 F  N +SP Q+   L    L  P   +     ++            ++P++  +
Sbjct: 345 -----PFGVNWNSPAQVLAYLKGEGLDLPDTREDTLAGYR------------EHPLVAKL 387

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           L +R+ +K  STY      H+N  T R+H  +      TGR+A  +PNLQ +P    L  
Sbjct: 388 LRYREAAKRVSTYGKEWAKHLNPATGRIHPSWQQIGAETGRMACRKPNLQQVPRDPALR- 446

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
              RAF     + ++ AD+SQIELRI A IAK   + + F    D+H + A+ + G  +E
Sbjct: 447 ---RAFRPKEGRVMLKADFSQIELRIAAAIAKEGRMLRAFREGKDLHALTASLVLGKPLE 503

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           +V  + R+ AK +NF ++YG+    L      A  +++   EA      +F  +P +  +
Sbjct: 504 EVGKEDRQLAKALNFGLLYGLGAEGLRRYALTAYGVKLTLEEAQKLRDAFFRAYPALKRW 563

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
               ++       V T+ GRR   D                 +N P+QG+ AD  + A+ 
Sbjct: 564 H---RSQPEGEVVVRTLLGRRRTTD------------RYTEKLNTPVQGTGADGLKMALA 608

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            + ++          +L +HDE+V E PEE      + +   M +     +   VP++V 
Sbjct: 609 LLWEN-RGLLWGAFPVLAVHDEVVLEAPEEGAKEYLETLTALMRRGMEEVLGGAVPVEVE 667

Query: 966 IKVSNNWQ 973
             +  +W 
Sbjct: 668 GGIYRDWG 675


>gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
 gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I
 gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
          Length = 574

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 146/631 (23%), Positives = 265/631 (41%), Gaps = 86/631 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +  +   + +++ +++LE          T        + + I                 
Sbjct: 2   DFEYVTGEEGLKKAIKRLENSPYLYLDTETTGD---RIRLVQIG---------------- 42

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                     +++   +    + +  L+K         +GHN+K+D   L+RYGI     
Sbjct: 43  --------DEENTYVIDLYEIQDIEPLRKLINERGI--VGHNLKFDLKYLYRYGIFPSAT 92

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D M+ SY+L  G   H +  I    L Y+     KS ++S     +      ++A  + 
Sbjct: 93  FDTMIASYLL--GYERHSLNHIVSNLLGYSMD---KSYQTSDWGASVLSDAQLKYAANDV 147

Query: 547 NVILQLWLLLRP---KLIVEKLLHVYER--------------LDKPMIDVVSQMEITGIQ 589
            V+ +L+  +R    +L  E+   + +               ++   +  V+++EI G  
Sbjct: 148 IVLRELFPKMRDMLNELDAERGEELLKTRTAKIFDLKSPVAIVEMAFVREVAKLEINGFP 207

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D + L      + +      +  Y     + +  SPKQL  +L  K K       KT +
Sbjct: 208 VDVEELTNKLKAVERETQKRIQEFY--IKYRVDPLSPKQLASLLTKKFKLNLP---KTPK 262

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
              +  D    +  D   +K +LE R+L KI     + L  H+  +  RV+  +     +
Sbjct: 263 GNVSTDDKALTSYQDVEPVKLVLEIRKLKKIADKLKE-LKEHL--KNGRVYPEFKQIGAV 319

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGR++S  PN+QNI          R  F +      + +D+SQIELRI A   K   +  
Sbjct: 320 TGRMSSAHPNIQNIHRDM------RGIFKAEEGNTFVISDFSQIELRIAAEYVKDPLMLD 373

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA------TQLRI 823
            F+   D+HR  A+ + G   E+++ + R+ AK INF +IYGIS   LA        + I
Sbjct: 374 AFKKGKDMHRYTASVVLGKKEEEITKEERQLAKAINFGLIYGISAKGLAEYAKLGYGVEI 433

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE--TIFGRRIHYDEINSPKSSIRN 881
              EA    +R+F  F    E+ ++ K  +++ G V+  T+ GRR   +  N        
Sbjct: 434 SLEEAQVLRERFFKNFKAFKEWHDRVKKELKEKGEVKGHTLLGRRFSANTFND------- 486

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
                A+N PIQG+ AD+ + A++    +L+   +  K++  +HDE+V E  +E+     
Sbjct: 487 -----AVNYPIQGTGADLLKLAVLLFDANLQKKGIDAKLVNLVHDEIVVECEKEKAEEVK 541

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           +I+  SM+ A    +   VP++V   ++  W
Sbjct: 542 EILEKSMKTAGKIILK-EVPVEVESVINERW 571


>gi|255551068|ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis]
 gi|223544402|gb|EEF45923.1| DNA polymerase theta, putative [Ricinus communis]
          Length = 2154

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 125/640 (19%), Positives = 253/640 (39%), Gaps = 70/640 (10%)

Query: 378  QQWVQKLETIGSASFKI------ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDL 431
              ++   +      F +        +++  +  +   +AI   +         + +    
Sbjct: 1475 DSFLVLWDAAQEFYFDLHYNKRSEVNSVAPY--EIHGMAICWENSPIYYVNLPKDLLCPD 1532

Query: 432  SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-------HRYG---- 480
            +            + +   + + K       +K   N+K    VL       HR+G    
Sbjct: 1533 NQKYVLRPENWLEIVRHRWNRIGKIMGKREVIKFTWNLKIQIQVLKNAVVSIHRFGSTNL 1592

Query: 481  -------------------ISMRGFEDIMLMSYVLDSGR---SSHDIASIAQKWLSYTRK 518
                               I++    D+ +++++L       S+ ++    ++ L    +
Sbjct: 1593 SGKDLDLELIDSSHLPLPQINVTEGIDMCIVAWILWPDEERSSNPNLEKEVKRRL--PTQ 1650

Query: 519  EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
             +  + ++    +++  +               L  +L   LI E L+   ++++ P+++
Sbjct: 1651 AVAAANRNGRWKNQMRRA-AHNGCCRRVAQTRALCSVLWKLLISEGLVEALKKIEMPLVN 1709

Query: 579  VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
            V++ ME+ GI +D +   +    + K L  LE+  Y+L+G  F+L +   + ++L+ +LK
Sbjct: 1710 VLADMELWGIGVDMEACLRARNVLGKKLRHLEKKAYELAGMTFSLYTAADIANVLYGRLK 1769

Query: 639  FPSGAKTKTGQWKT-TAQDLEQINCGDNP-----IIKNILEWRQLSKIKSTYADSLPNHI 692
             P       G+    T +    +               I   +    +       +   +
Sbjct: 1770 LPIPEGHGKGKLHPSTDKHCLDLLRKKYCCFAFMFYATIAALKLGLLMLFFLILMILIWV 1829

Query: 693  NKRTQRVHTFYSLASTMTGRLA---SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
            ++    + T   +   +   +    S++ N  +                +     L++AD
Sbjct: 1830 SEIKVLLRTNLGVMQCVEHMVEFKISMDKNGGDAEANNYKINAREFFIPTQENWLLLTAD 1889

Query: 750  YSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            YSQIELR++AH +K   L ++      D+  ++AA   G   E V+   R   K + + I
Sbjct: 1890 YSQIELRLMAHFSKDASLIELLSKPHGDVFTIIAARWTGKAEESVASLERDQTKRLVYGI 1949

Query: 809  IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
            +YG+    LA QL     EAA+ IK +   FPG+  ++ +     R+NGYVET+ GR+  
Sbjct: 1950 LYGMGANTLAQQLECSSDEAAEKIKSFKSCFPGVASWLHEAVASCRKNGYVETLKGRKRF 2009

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED--------------- 913
              +I    S  ++  +R A+N+  QGSAAD+ + AMI+++  +                 
Sbjct: 2010 LSKIKFGNSKEKSKAQRQAVNSICQGSAADLIKIAMINIYSVIARVDGPDPSSSLATKFH 2069

Query: 914  -HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
              K   ++LLQ+HDELV EV    I  A+ ++   ME A 
Sbjct: 2070 MLKGRCRILLQVHDELVLEVDPPVIKEAASLLQAGMENAA 2109


>gi|303267731|ref|ZP_07353545.1| DNA polymerase I [Streptococcus pneumoniae BS457]
 gi|302642736|gb|EFL73069.1| DNA polymerase I [Streptococcus pneumoniae BS457]
          Length = 255

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 140/258 (54%), Gaps = 11/258 (4%)

Query: 10  VDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +DGSS  +RAF+A        +   GL  NAI GF  ML  LL+        SH  V FD
Sbjct: 2   IDGSSVAFRAFFALYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSHILVAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               TFR E+Y DYK  R K P+    Q P +R      GI   ++  +EADDII T   
Sbjct: 58  AGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLNHMGIRHYDLAQYEADDIIGTLDK 117

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182
           +AE++GF +TI+S DKDL+QL    T +  + K     E    ++++++ G+ P + + L
Sbjct: 118 LAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTPAQFIDL 177

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           +AL GD  DNIPG+  +G KT   LL E+G+LE I  N   +K  K +EN++   E A L
Sbjct: 178 KALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKEQAFL 237

Query: 243 SRKLVMLRTDVPITIPLE 260
           S+ L  + T  PI I LE
Sbjct: 238 SKTLATIDTKAPIAIGLE 255


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score =  285 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 143/552 (25%), Positives = 259/552 (46%), Gaps = 59/552 (10%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRS--S 502
            + + ++++   EN+    IGHN+K+D   L     I  +   D M+ S +L  G S   
Sbjct: 67  PEVVKNHIQNLIENKGI--IGHNLKFDLKFLKTNLNILPKIVFDTMIASQILAKGDSNQR 124

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           H +++ A++++S    ++ K+ + S    K   S+  E+A ++ + +  L+   + +L  
Sbjct: 125 HSLSASAKRFVSL---DVDKTYQKSPWWAKDLSSEQIEYAAKDIDTLRHLFKEEKNQLNQ 181

Query: 563 EKLLHVYER--------------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           + L                    L+   +  + ++E++GI ID++  K++  +      S
Sbjct: 182 DNLHKKASGETFKVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKKLLKQKESEFQS 241

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
                   +G      SP+Q+ + L  KLK       KT +   ++QD+   +  D   +
Sbjct: 242 DYMKFKIKTGAD--PFSPQQVVNYLTNKLKIKLP---KTEKGSFSSQDVFLKDYEDIEEV 296

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           + +L+ R   KI     + L      R +RV+  +      TGR++SL PNLQNIP    
Sbjct: 297 RLLLKLRADKKIIDKIKEILQ---FTRNERVYGEFKQIGAATGRMSSLRPNLQNIPK--- 350

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
               ++  F      K I ADYSQIELRI A   K   +   F    D+H++ A+ I G 
Sbjct: 351 ---NLKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKDLHKLTASIITGK 407

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGI 842
           + ++++ + R+ AK INF +IYG+SP  L         + I   EA  + + YF  +   
Sbjct: 408 SYDEITKEERQLAKAINFGLIYGMSPKSLVEYAKANYGVSISLQEAKKFHENYFKFYKSF 467

Query: 843 HEYIEKTKNFVRQNGYV--ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            ++ +K K  + ++  +  ET+ GR++                   A+N PIQGS +D+ 
Sbjct: 468 KDWHDKVKEHLDKHRSIELETLLGRKLI------------AYKFTDAVNYPIQGSGSDLL 515

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + A++   K  E + L  K++  +HDE++ EV  ++I  A +++  SMEKA    +   V
Sbjct: 516 KMAVVFFFK--ERNDLDAKVVNLVHDEILVEVAAKDIEKAKEVLSSSMEKAGKLILK-DV 572

Query: 961 PLKVNIKVSNNW 972
           P+   + VS++W
Sbjct: 573 PVAFEMVVSDSW 584


>gi|251795439|ref|YP_003010170.1| 5'-3' exonuclease [Paenibacillus sp. JDR-2]
 gi|247543065|gb|ACT00084.1| 5'-3' exonuclease [Paenibacillus sp. JDR-2]
          Length = 285

 Score =  285 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 96/289 (33%), Positives = 151/289 (52%), Gaps = 13/289 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            EN + +VDG + ++RAF+A    +R+  DG P NAI GF   L+  +   +     +H 
Sbjct: 2   NENKILIVDGMALLFRAFFAQQYSARRMADGTPTNAIYGFMQYLFDAVNQFQ----PTHV 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A  +D  + TFR E+Y +YKANRP+ P+ L+PQ  LV+    A GIP I I+G+EADD I
Sbjct: 58  ACCWDMGSKTFRTEMYSNYKANRPEAPDDLIPQFSLVKDIVAALGIPNIGIEGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPE 177
            T +    +    V I++ D+D++QLV     +    K        D+  + +  GI P 
Sbjct: 118 GTVSKQLSQMAH-VYILTGDQDMLQLVEERIHVVIMKKGRGNYAVYDLGFLKEDKGIHPF 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++ LTGD+ DN PG+ GIG KTA  LLQE+ +++ IL N   +  K  +  I    
Sbjct: 177 QVIEMKGLTGDTSDNYPGVKGIGEKTALKLLQEFESIDGILSNLDSV-SKSIKAKIEADL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           +   LSR L  +  +VP+   LE  +        ++   +      L+ 
Sbjct: 236 DMLHLSRTLARINIEVPVACSLEECVWSVPVEAEIV--FEKYRLASLLK 282


>gi|226312621|ref|YP_002772515.1| 5'-3' exonuclease [Brevibacillus brevis NBRC 100599]
 gi|226095569|dbj|BAH44011.1| putative 5'-3' exonuclease [Brevibacillus brevis NBRC 100599]
          Length = 292

 Score =  285 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 97/291 (33%), Positives = 150/291 (51%), Gaps = 14/291 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M     + L+DG SF++RAFY +       +   G+  NA+ GF  M+    + +R    
Sbjct: 1   MSDSGKVLLIDGMSFLFRAFYGSAWGGAYRQTSTGVYTNAVYGFTKMMLDYAELTR---- 56

Query: 58  ASHFAVIFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
            SH  V +D        R++ Y  YK+NR   P+ L+PQ  LV+  T AF +P +   GF
Sbjct: 57  PSHLVVGWDVASRESLVRSQWYDGYKSNRQAAPDELIPQFDLVKEVTDAFSVPNLGCPGF 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---YDTVKEEKIDIEHVIKKW 172
           E DD++ T +    +EG  V I + D D +QL+S    +    +  K E  +   ++   
Sbjct: 117 EGDDVLGTLSTRLSEEGHEVIIATGDYDSLQLISERVSVKILKNGGKHEHYNPASLLALR 176

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           GI PE++V ++AL GD+ D IPG PGIG KTA  L+ E+G+L+N+ +N +     K R  
Sbjct: 177 GITPEQVVDVKALMGDASDCIPGCPGIGEKTATKLITEHGDLDNLYVNLANCTP-KMRSK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           + E  +   LSRKL  +  DVP+   LE   L + +   + +    LEF +
Sbjct: 236 LEENRDQVYLSRKLATIIRDVPVEYALED-ALWEYDRQVVQNKFDELEFGR 285


>gi|322822411|gb|EFZ28469.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  285 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 129/548 (23%), Positives = 237/548 (43%), Gaps = 74/548 (13%)

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP----IDKISDSQVQE 540
              DI LMS++L     +                 +L+S +  I        + +  V+E
Sbjct: 383 CVSDIRLMSWMLQPSAGADAFTD---------YDVLLQSCQQQIGLAAGFRNMENCTVKE 433

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                   +  L+ LL  +L  + LL  + + +K +  + + M++ G  ++   ++    
Sbjct: 434 IVCHRVYYMAPLYRLLYGQLGTQGLLPAFLKQEKRISLLCAAMKLNGFPVNLSEVEGFKT 493

Query: 601 EISKNLLSLEENIYDL--SGEKFNLSSPKQLGDILFTKLKFPSGAK-------------- 644
                +  L      L  S  +FN+ + ++    ++  L+  +                 
Sbjct: 494 RCIARMEELRIAAQKLVPSMPEFNMQNLEECRMAIYEVLQLGTHLTHARNDGTDSCSLTV 553

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK---------- 694
           TK+G+   T+++  ++    + + + ++ +R+ +K+  TY   +                
Sbjct: 554 TKSGKLS-TSEETLKLLAPHHELPRLLIAYRKTAKLLQTYTVGMMETAFPFKGNDSEFTD 612

Query: 695 ---------------RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK------- 732
                          +   +H  +    T TGRL+ +EPNLQN+P    + +        
Sbjct: 613 NRIGESSDKKDDTPVKWVTLHPNFVQEGTDTGRLSCVEPNLQNLPRSKAIAENDNSEPYE 672

Query: 733 -----IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                 RR F  P    L+S DY QIELR++AH++  T L     N+ D+HR +A  IF 
Sbjct: 673 AEMATFRRCFAVPIGLTLLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFR 732

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +   V+ + R  AK + F ++YG  P  LATQ+ +P   A   +  +   +P I  Y  
Sbjct: 733 KSP--VNVEERTLAKRVVFGMLYGAGPRTLATQMGVPMERALHVMSLFKASYPQIERYQR 790

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           +  +  R +G+V T+ GR     +IN    + R   ER A N+ IQGSAAD+ +  M++V
Sbjct: 791 RVIDQCRTDGFVRTMTGRIRSLPDINDRVMAKRMYAERQAFNSVIQGSAADVMKLGMLAV 850

Query: 908 HK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
            +  L+ +    ++L QIHDE+V  VP  ++     ++  SM  A    ++L VPL+V +
Sbjct: 851 ERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHA----VSLLVPLRVTV 906

Query: 967 KVSNNWQE 974
           ++  +  E
Sbjct: 907 RIGQSLGE 914


>gi|317130034|ref|YP_004096316.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474982|gb|ADU31585.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Bacillus
           cellulosilyticus DSM 2522]
          Length = 287

 Score =  284 bits (726), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 101/288 (35%), Positives = 151/288 (52%), Gaps = 14/288 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLL---SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N + LVDG + ++RAFYAT +         G+P NAI GF   L+  +   +     +H
Sbjct: 2   KNKVMLVDGMALLFRAFYATAMSGYFMVNSKGVPTNAIHGFIKHLFTAVNTYK----PTH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               +D  + TFR E++PDYK NR + P  L+PQ  LV+    A  IP + + GFEADD 
Sbjct: 58  VICCWDMGSKTFRTELFPDYKGNRGEPPVELIPQFDLVKDVVDALDIPNVGLAGFEADDC 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPP 176
           I T     ++E   V I++ D+D++QL+     +    K          +  +++ GI P
Sbjct: 118 IGTLAQQFKEES-EVLILTGDQDILQLIDENVHVVLLKKGYGNYALYKEDVFLEEKGITP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +MV L+AL GDS DN PG+ GIG KTA  LL++YG +E IL N   +  K +R  I   
Sbjct: 177 PQMVDLKALMGDSSDNYPGVKGIGEKTALQLLKKYGTIEGILENLPSL-TKAQRNKIETD 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +   LSRKL  +  +V ++ PL      + N  ++I     LEF  +
Sbjct: 236 LDMLHLSRKLAKIHCEVEVSCPLNTAAF-NVNRTKMIEKFTELEFKNI 282


>gi|71660963|ref|XP_817509.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70882706|gb|EAN95658.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 924

 Score =  284 bits (726), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 129/548 (23%), Positives = 236/548 (43%), Gaps = 74/548 (13%)

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP----IDKISDSQVQE 540
              DI LMS++L     +                 +L+S +  I        + +  V+E
Sbjct: 380 CVSDIRLMSWMLQPSAGADAFTD---------YDVLLQSCQQQIGLAAGFRNMENCTVKE 430

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                   +  L+ LL  +L  + LL  + + +K +  + + M++ G  ++   ++    
Sbjct: 431 IVCHRVYYMAPLYRLLYGQLGTQGLLPAFLKQEKRISLLCAAMKLNGFPVNLSEVEGFKT 490

Query: 601 EISKNLLSLEENIYDL--SGEKFNLSSPKQLGDILFTKLKFPSGAK-------------- 644
                +  L      L  S  +FN+ +  +    ++  L+  +                 
Sbjct: 491 RCIARMEELRIAAQKLVPSMPEFNMQNLDECRMAIYEVLQLGTHLTHARNDGTDSCSLTV 550

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK---------- 694
           TK+G+   T+++  ++    + + + ++ +R+ +K+  TY   +                
Sbjct: 551 TKSGKLS-TSEETLRLLAPHHELPRLLIAYRKTAKLLQTYTVGMMETAFPFKGNDSEFTD 609

Query: 695 ---------------RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK------- 732
                          +   +H  +    T TGRL+ +EPNLQN+P    + +        
Sbjct: 610 NRIGESSDKKDDTPVKWVTLHPNFVQEGTDTGRLSCVEPNLQNLPRSKAIAENDNSEPYE 669

Query: 733 -----IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                 RR F  P    L+S DY QIELR++AH++  T L     N+ D+HR +A  IF 
Sbjct: 670 AEMATFRRCFAVPIGLTLLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFR 729

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +   V+ + R  AK + F ++YG  P  LATQ+ +P   A   +  +   +P I  Y  
Sbjct: 730 KSP--VNVEERTLAKRVVFGMLYGAGPRTLATQMGVPMERALHVMSLFKASYPQIERYQR 787

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           +  +  R +G+V T+ GR     +IN    + R   ER A N+ IQGSAAD+ +  M++V
Sbjct: 788 RVIDQCRTDGFVRTMTGRIRSLPDINDRVMAKRMYAERQAFNSVIQGSAADVMKLGMLAV 847

Query: 908 HK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
            +  L+ +    ++L QIHDE+V  VP  ++     ++  SM  A    ++L VPL+V +
Sbjct: 848 ERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHA----VSLLVPLRVTV 903

Query: 967 KVSNNWQE 974
           ++  +  E
Sbjct: 904 RIGQSLGE 911


>gi|229544339|ref|ZP_04433398.1| 5'-3' exonuclease [Bacillus coagulans 36D1]
 gi|229325478|gb|EEN91154.1| 5'-3' exonuclease [Bacillus coagulans 36D1]
          Length = 299

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 152/298 (51%), Gaps = 14/298 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K  HL L+DG + ++RAFYAT           G+P N + GF   L  LL    K+  
Sbjct: 1   MNKRPHLLLIDGMALLFRAFYATAVTGQFMVNSKGMPTNGVQGFLRHL--LLAAENKK-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV +D  + TFRN++Y +YKANR   P  ++PQ  L +   +AF IP + + G+EA
Sbjct: 57  PTHVAVCWDMGSKTFRNDLYGEYKANRDVPPVEMIPQFDLAKETVEAFEIPNVGVAGYEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD + T +   + E   ++I++ D+D++QL+     ++   K     +       + ++G
Sbjct: 117 DDCLGTLSSRFKDE-ADISILTGDRDILQLLDDHVEVHLLQKGFGNYKTYTKAAFMDEYG 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + + ++AL GD+ D  PG+ GIG KTA  L+  +GN+  IL +   +    +++ I
Sbjct: 176 VTPRQFIDVKALMGDASDGYPGVKGIGEKTAFKLVSRFGNISGILGHLGELTPS-QQKKI 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
               E   LSRKL  +R DVP+   LE            +  ++ LE   +   + T 
Sbjct: 235 EAGLEMLHLSRKLAEIRCDVPVAFSLEEARFGQI-PETFMELMEELELKMVKRHLVTA 291


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 122/523 (23%), Positives = 221/523 (42%), Gaps = 47/523 (8%)

Query: 462  FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR--SSHDIASIAQKWLSYTRKE 519
               +G N+ +D   L R G       D ML S VL +G   + H +  +A + L     E
Sbjct: 967  VEVVGQNLGFDLPFLMRLGFVPGRVRDTMLASQVLHAGNRTTGHSLKDLAHRHLGL---E 1023

Query: 520  ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            + K  +++     ++D+ +  +A  ++ + L LW  L P+L    L    E  +   +  
Sbjct: 1024 LDKGLQTADWSGPLTDAHLG-YAARDAELPLALWERLAPELAAAHLTGTAEA-EMAALPA 1081

Query: 580  VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL---SGEKFNLSSPKQLGDILFTK 636
            V+     G+  D+     V+A+         E++ +L   +G  F +++   + ++    
Sbjct: 1082 VAWAARHGVGFDRPAWDAVAADTEACAARAREHLDELLPNAGNLFGVTNWNSVDEV---- 1137

Query: 637  LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
                  A         T+   + +    +P    + E R  SK+  TY      H+    
Sbjct: 1138 -----TAAFAAAGVALTSTGDDALAAVAHPAAALLREHRAASKLSGTYGRGWLRHVADDG 1192

Query: 697  QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            +    +  + +  +GR++  +PNLQ +P       + RR F++PP + L+ ADYSQIELR
Sbjct: 1193 RVYAAWKQVGAGASGRMSCKDPNLQQLPRD----PRFRRCFVTPPGRVLVKADYSQIELR 1248

Query: 757  ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
            I A I     +   ++   D+H   A  + G     V+   R+ +K++NF ++YG+    
Sbjct: 1249 IAAKITGDKRMLDAYQKGEDLHTTTARAVLGKT--DVTKADRQLSKSLNFGLLYGMGAKA 1306

Query: 817  LAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
            LA        + +   EAAD+   +F  +PG+  +  K  + + Q     T+ GRR    
Sbjct: 1307 LAAYAASNFGVALTEGEAADHRDAFFRTYPGLRAWHRKVPDGIIQT---RTLAGRRR--- 1360

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                    +        +N P+QG+ AD  +RA+  +     +       +L +HDE+V 
Sbjct: 1361 --------VGVGAFTEKLNTPVQGTGADGLKRALALLWAR-RNSCPDAFPVLLVHDEIVV 1411

Query: 931  EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            E  EE    A   +  +M     P I+  VP++V +     W 
Sbjct: 1412 ECSEERRDEAIAWVRDAMRDGMAPLID-PVPVEVEVSAGRTWG 1453


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 140/555 (25%), Positives = 258/555 (46%), Gaps = 59/555 (10%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRS--S 502
            + + ++++   EN+    IGHN+K+D   L     I  +   D M+ S +L  G +   
Sbjct: 66  PEVVKNHIQNLIENKGI--IGHNLKFDLKFLKTNLNILPKIVFDTMIASQILAKGDNSQR 123

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           H +++ A++++S    ++ K+ + S    K    +  E+A ++ + +  L+   + +L  
Sbjct: 124 HSLSASAKRFVSL---DVDKTYQKSPWWAKDLSPEQIEYAAKDIDALRHLFKEEKNQLNQ 180

Query: 563 EKLLHVYER--------------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           + L                    L+   +  + ++E++GI ID++  K++  +      +
Sbjct: 181 DNLHKKASGETFKVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKKLLKQKELEFQA 240

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
                   +G      SP Q+ + L  KLK       KT +   ++QD+   +  D   +
Sbjct: 241 DYMKFKIKTGAD--PFSPLQVVNYLTNKLKIKLP---KTEKGSFSSQDVFLKDYEDIEEV 295

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           + +L+ R   KI     + L      R +RV+  +      TGR++SL PNLQNIP    
Sbjct: 296 RLLLKLRADKKIIDKIKEILQ---FTRNKRVYGEFKQIGAATGRMSSLRPNLQNIPK--- 349

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
               ++  F      K I ADYSQIELRI A   K   +   F    D+H++ A+ I G 
Sbjct: 350 ---NLKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKDLHKLTASIITGK 406

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGI 842
           + ++++ + R+ AK INF +IYG+SP  L         + I   EA  + + YF  +   
Sbjct: 407 SYDEITKEERQLAKAINFGLIYGMSPKSLIEYAKANYGVSINLQEAKKFHENYFKFYKSF 466

Query: 843 HEYIEKTKNFVRQNGYV--ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            ++ ++ K  + ++ +   ET+ GR++                   A+N PIQGS +D+ 
Sbjct: 467 KDWHDRVKEHLDKHRFTTLETLLGRKLI------------AYKFTDAVNYPIQGSGSDLL 514

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + A++   K  E + L  K++  +HDE++ EV   +I  A +++  SMEKA    +   V
Sbjct: 515 KMAVVFFFK--ERNDLDAKVVNLVHDEILVEVAANDIEKAKEVLSSSMEKAGKLILK-DV 571

Query: 961 PLKVNIKVSNNWQEE 975
           P+   + VS++W +E
Sbjct: 572 PVAFEMVVSDSWSKE 586


>gi|311030373|ref|ZP_07708463.1| 5'-3' exonuclease [Bacillus sp. m3-13]
          Length = 289

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 14/293 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + L+DG + ++R+F+AT + +R     +G+P NAI GF   +   ++        +H 
Sbjct: 2   KKVLLIDGMALLFRSFFATSVYNRFMYTSNGIPTNAIQGFVKHMITSMETFE----PTHV 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E++ DYKANRP  P+ L+PQ  LV+   +AF IP I + GFEADD +
Sbjct: 58  VCCWDMGSKTFRTEMFDDYKANRPAPPQELIPQFDLVKEVVEAFDIPNIGLAGFEADDCL 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +  +E   V I++ D+D++QL+ P   +   +K     E +D     +K G+ P+
Sbjct: 118 GTLAELYREE-AEVIILTGDQDVLQLIKPNIKVALLMKGYGNYEVLDENGFYEKKGLTPQ 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L+A+ GDS DN PG+ G+G KTA  LL EY  ++ IL N S +  K +R+   +  
Sbjct: 177 QLIDLKAIMGDSSDNYPGVKGVGEKTATKLLMEYQTVDGILENLSAL-TKSQRQKFEDSL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           E   LSR+L  ++ DVP+   L    +   +  ++ S    LEF  L   +  
Sbjct: 236 ELLHLSRELATIKCDVPVYCELHDATIT-IDRNKVASKFDELEFKNLHGFIDK 287


>gi|71668117|ref|XP_820999.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70886365|gb|EAN99148.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 130/548 (23%), Positives = 235/548 (42%), Gaps = 74/548 (13%)

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP----IDKISDSQVQE 540
              DI LMS++L     +                 +L+S +  I        + +  V+E
Sbjct: 383 CVSDIRLMSWMLQPSAGADAFTD---------YDVLLQSCQQQIGLAAGFRNMENCTVKE 433

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
                   +  L+ LL  +L  + LL  + + +K +  + + M++ G  +    ++    
Sbjct: 434 IVCHRVYYMAPLYRLLYGQLGTQGLLPAFLKQEKRISLLCAAMKLNGFPVKLSEVEGFKT 493

Query: 601 EISKNLLSLEENIYDL--SGEKFNLSSPKQLGDILFTKLKFPSGAK-------------- 644
                +  L      L  S  +FN+ + ++    ++  L+  +                 
Sbjct: 494 RCIARMEELRIAAQKLVPSMPEFNMQNLEECRMAIYEVLQLGTHLTHARNDGTDSCSLTV 553

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK---------- 694
           TK+G+   T+++  ++    + + + ++ +R+ +K+  TY   +                
Sbjct: 554 TKSGKLS-TSEETLKLLAPHHELPRLLIAYRKTAKLLQTYTVGMMETAFPFKGNDSEFTD 612

Query: 695 ---------------RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK------- 732
                          +   +H  +    T TGRL+ +EPNLQN+P    +          
Sbjct: 613 NRIGECSDKKDDTPVKWVTLHPNFVQEGTDTGRLSCVEPNLQNLPRSKVIADNDNSEPYE 672

Query: 733 -----IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                 RR F  P    L+S DY QIELR++AH++  T L     N+ D+HR +A  IF 
Sbjct: 673 AEMATFRRCFAVPIGLTLLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFR 732

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +   VS + R  AK + F ++YG  P  LATQ+ +P   A   +  +   +P I  Y  
Sbjct: 733 KSP--VSVEERTLAKRVVFGMLYGAGPRTLATQMGVPMERALHVMSLFKASYPQIERYQR 790

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           +  +  R +G+V T+ GR     +IN    + R   ER A N+ IQGSAAD+ +  M++V
Sbjct: 791 RVIDQCRTDGFVRTMTGRIRSLPDINDRVMAKRMYAERQAFNSVIQGSAADVMKLGMLAV 850

Query: 908 HK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
            +  L+ +    ++L QIHDE+V  VP  ++     ++  SM  A    ++L VPL+V +
Sbjct: 851 ERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHA----VSLLVPLRVTV 906

Query: 967 KVSNNWQE 974
           ++  +  E
Sbjct: 907 RIGQSLGE 914


>gi|288818109|ref|YP_003432457.1| 5'-3' exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|288787509|dbj|BAI69256.1| 5'-3' exonuclease [Hydrogenobacter thermophilus TK-6]
 gi|308751710|gb|ADO45193.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 289

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/284 (39%), Positives = 157/284 (55%), Gaps = 9/284 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DGS+FIYR+F+A P LS K DG P  AI GF   +  +L+  +       F V FD
Sbjct: 4   LCLLDGSAFIYRSFFALPPLSTK-DGFPTGAIYGFMRAVLHILKAEKTR----CFVVAFD 58

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +PA T R E    YK+ RP +P+ L  Q+P+++   +  GIP IE+ G+EADD+I   T 
Sbjct: 59  HPAPTIRKEASSTYKSKRPSMPDPLRLQIPVIKELLKLLGIPVIEVPGYEADDVIGYITE 118

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A   GF+V I S DKD++QLVS    + + +  E  DI+ V +K+G+ P  +  L AL 
Sbjct: 119 RALSFGFSVRIYSPDKDILQLVSQKVQVINPISGEVFDIKRVEEKFGVKPHLIPHLLALV 178

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GD  DNI G+ GIG KTA  +L++YG++ENIL N    K            +   LS  L
Sbjct: 179 GDQTDNIEGVKGIGKKTAIKVLEKYGSIENILRNFDDFKASFPH----ADRDKLELSYYL 234

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           V L+    +TI  + L +++ N   L + L  LE   LI  V  
Sbjct: 235 VKLQPPPELTIEEDQLCMKEPNMEALKAKLLELEMKSLIKDVEN 278


>gi|322383749|ref|ZP_08057500.1| 5'3'-exonuclease-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151961|gb|EFX44904.1| 5'3'-exonuclease-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 292

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 159/299 (53%), Gaps = 17/299 (5%)

Query: 1   MQKENH---LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           MQ++N    L LVDG + ++RA+YA+     + R  +GLP NA+ GF       +     
Sbjct: 1   MQEQNKQDSLLLVDGMALLFRAYYASAYSGYMKRTSEGLPTNAVYGFVRYFMDAIHTF-- 58

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +H A  +D  + TFR+E +  YKANR + PE L+PQ  LV+    +FG+P I   G
Sbjct: 59  --APTHVACCWDMGSKTFRSEKFNAYKANRAEAPEELIPQFSLVKEVVDSFGVPNIGASG 116

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170
           +EADD I T   +  KE   + I++ D D++QL+     +    K        + E +++
Sbjct: 117 YEADDCIGTLARLFGKE-MDIRILTGDHDMLQLIDDRVHVIIMKKGMSNYMVYNPEVLLE 175

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           +  + P ++V ++A  GD+ DN PG+ GIG KTA  L++EYG++E +L N + +  K  R
Sbjct: 176 EKQLTPAQVVDVKAFMGDTADNYPGVKGIGEKTAVKLIREYGSVEGVLDNLNEL-TKGVR 234

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
             I    E   LSR+L  ++ DVP++  L+   L   +  R+ +  + LEF  L   + 
Sbjct: 235 SKIEAELEMLHLSRELARIQCDVPVSCLLDE-CLWSIDKLRVQNKFEELEFGGLAKLIG 292


>gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 704

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 130/532 (24%), Positives = 242/532 (45%), Gaps = 64/532 (12%)

Query: 485 GFEDIMLMSYVLDSG--RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
              D ++ + V+++G  R+   +  + +++L     + +++   S P   +S  Q+  +A
Sbjct: 195 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSP--HLSQEQLL-YA 251

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
             ++ V+L L   L+ KL    L  V   ++   +  V  ME+ G+QID    K++ A +
Sbjct: 252 ARDAAVLLPLQQRLQQKLEAFDLQEVM-DVEMRCLRPVVAMELNGMQIDHARWKELEAHL 310

Query: 603 SKNLLSLEENIYD---LSGEKFNLSSPKQLGDILFT-KLKFPSGAKTKT----------- 647
            +      + +     +     N +S KQ+ D L    +  P   + ++           
Sbjct: 311 RREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPESRTRGSRFSFSE 370

Query: 648 ---GQWKTTAQDLEQINCG----------DNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
              G  K  A+  +Q+               P ++ + ++R+ +K  +T+ D LP HIN 
Sbjct: 371 LPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINS 430

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-----KKLISAD 749
            T ++H         +GR +   PNLQ IP +    ++ R  F+   T      K I AD
Sbjct: 431 VTGKIHCSLHQCGAGSGRFSCDSPNLQQIPRE----RRFRACFVPSKTVAGRPGKFIIAD 486

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           +SQIELRI A +A    + + +    D+HR+ A+ I       +S   R+ AK +NF +I
Sbjct: 487 FSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLI 546

Query: 810 YGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           YG+S  R       A  + +   EA D+  +YF  +PGI  +  + K    Q     T  
Sbjct: 547 YGMSADRFRGYASSAYGVEMSLQEARDFHAKYFSSYPGITRWHRRQK--AEQPRETRTRA 604

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR  ++                ++N PIQG++ADIT+ +++ +   L    L  ++++ 
Sbjct: 605 GRRALFEY----------FAFTKSLNYPIQGTSADITKESLVQLQHKL--APLGGRLVMC 652

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +HDE++ EVPEE+     ++++ +ME A    +   VP      ++++W ++
Sbjct: 653 VHDEIIAEVPEEKAEEGLRVLIDTMEAAGNKYLRF-VPCVAEGAIADSWADK 703



 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 17/91 (18%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
              + T  +D F ++   + ++     D  +   +   + +S                 L
Sbjct: 2   GVDVETTGLDPFSARIRLLQLAL---PDFPALLFDLFALPVSSP--------------AL 44

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             ++    +    K+ HN ++D   L   G+
Sbjct: 45  RPVRLLLASPRIRKVFHNGQFDLCFLAAAGL 75


>gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 704

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 130/532 (24%), Positives = 242/532 (45%), Gaps = 64/532 (12%)

Query: 485 GFEDIMLMSYVLDSG--RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
              D ++ + V+++G  R+   +  + +++L     + +++   S P   +S  Q+  +A
Sbjct: 195 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSP--HLSQEQLL-YA 251

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
             ++ V+L L   L+ KL    L  V   ++   +  V  ME+ G+QID    K++ A +
Sbjct: 252 ARDAAVLLPLQQRLQQKLEAFDLQEVM-DVEMRCLRPVVAMELNGMQIDHARWKELEAHL 310

Query: 603 SKNLLSLEENIYD---LSGEKFNLSSPKQLGDILFT-KLKFPSGAKTKT----------- 647
            +      + +     +     N +S KQ+ D L    +  P   + ++           
Sbjct: 311 RREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPESRTRGSRFSFSE 370

Query: 648 ---GQWKTTAQDLEQINCG----------DNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
              G  K  A+  +Q+               P ++ + ++R+ +K  +T+ D LP HIN 
Sbjct: 371 LPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINS 430

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-----KKLISAD 749
            T ++H         +GR +   PNLQ IP +    ++ R  F+   T      K I AD
Sbjct: 431 VTGKIHCSLHQCGAGSGRFSCDSPNLQQIPRE----RRFRACFVPSKTVAGRPGKFIIAD 486

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           +SQIELRI A +A    + + +    D+HR+ A+ I       +S   R+ AK +NF +I
Sbjct: 487 FSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLI 546

Query: 810 YGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           YG+S  R       A  + +   EA D+  +YF  +PGI  +  + K    Q     T  
Sbjct: 547 YGMSADRFRGYASSAYGVEMSLQEARDFHAKYFSSYPGITRWHRRQK--AEQPRETRTRA 604

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR  ++                ++N PIQG++ADIT+ +++ +   L    L  ++++ 
Sbjct: 605 GRRALFEY----------FAFTKSLNYPIQGTSADITKESLVQLQHKL--APLGGRLVMC 652

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +HDE++ EVPEE+     ++++ +ME A    +   VP      ++++W ++
Sbjct: 653 VHDEIIAEVPEEKAEEGLRVLIDTMEAAGNKYLRF-VPCVAEGAIADSWADK 703



 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 17/91 (18%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
              + T  +D F ++   + ++     D  +   +   + +S                 L
Sbjct: 2   GVDVETTGLDPFSARIRLLQLAL---PDFPALLFDLFALPVSSP--------------AL 44

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             ++    +    K+ HN ++D   L   G+
Sbjct: 45  RPVRLLLASPRIRKVFHNGQFDLCFLAAAGL 75


>gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 704

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 130/532 (24%), Positives = 242/532 (45%), Gaps = 64/532 (12%)

Query: 485 GFEDIMLMSYVLDSG--RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
              D ++ + V+++G  R+   +  + +++L     + +++   S P   +S  Q+  +A
Sbjct: 195 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSP--HLSQEQLL-YA 251

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
             ++ V+L L   L+ KL    L  V   ++   +  V  ME+ G+QID    K++ A +
Sbjct: 252 ARDAAVLLPLQQRLQQKLEAFDLQEVM-DVEMRCLRPVVAMELNGMQIDHARWKELEAHL 310

Query: 603 SKNLLSLEENIYD---LSGEKFNLSSPKQLGDILFT-KLKFPSGAKTKT----------- 647
            +      + +     +     N +S KQ+ D L    +  P   + ++           
Sbjct: 311 RREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPESRTRGSRFSFSE 370

Query: 648 ---GQWKTTAQDLEQINCG----------DNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
              G  K  A+  +Q+               P ++ + ++R+ +K  +T+ D LP HIN 
Sbjct: 371 LPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINS 430

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-----KKLISAD 749
            T ++H         +GR +   PNLQ IP +    ++ R  F+   T      K I AD
Sbjct: 431 VTGKIHCSLHQCGAGSGRFSCDSPNLQQIPRE----RRFRACFVPSKTVAGRPGKFIIAD 486

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           +SQIELRI A +A    + + +    D+HR+ A+ I       +S   R+ AK +NF +I
Sbjct: 487 FSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLI 546

Query: 810 YGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           YG+S  R       A  + +   EA D+  +YF  +PGI  +  + K    Q     T  
Sbjct: 547 YGMSADRFRGYASSAYGVEMSLQEARDFHAKYFSSYPGITRWHRRQK--AEQPRETRTRA 604

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GRR  ++                ++N PIQG++ADIT+ +++ +   L    L  ++++ 
Sbjct: 605 GRRALFEY----------FAFTKSLNYPIQGTSADITKESLVQLQHKL--APLGGRLVMC 652

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +HDE++ EVPEE+     ++++ +ME A    +   VP      ++++W ++
Sbjct: 653 VHDEIIAEVPEEKAEEGLRVLIDTMEAAGNKYLRF-VPCVAEGAIADSWADK 703



 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 17/91 (18%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
              + T  +D F ++   + ++     D  +   +   + +S                 L
Sbjct: 2   GVDVETTGLDPFSARIRLLQLAL---PDFPALLFDLFALPVSSP--------------AL 44

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             ++    +    K+ HN ++D   L   G+
Sbjct: 45  RPVRLLLASPRIRKVFHNGQFDLCFLAAAGL 75


>gi|310640968|ref|YP_003945726.1| 5-3 exonuclease, n-terminal resolvase-like domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245918|gb|ADO55485.1| 5-3 exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus polymyxa SC2]
          Length = 298

 Score =  281 bits (718), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 103/294 (35%), Positives = 149/294 (50%), Gaps = 16/294 (5%)

Query: 1   MQKEN--HLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M + N   + LVDG + ++RA+YAT     + R   G+P NAI GF    W  +Q     
Sbjct: 1   MTQRNEQSVMLVDGMALLFRAYYATAANGYIRRTKAGVPTNAIYGFIRYFWDAVQTFN-- 58

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H    +D    TFR E +  YK NR   P+ L+PQ  L+R  T + GIP I  +GF
Sbjct: 59  --PTHVICCWDMGGTTFRGEHFAAYKGNRADAPDDLIPQFTLIREVTDSLGIPNIGAEGF 116

Query: 116 EADDIIATYTYIAEK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIK 170
           EADD I T      + E   V I+S D DL+QLV   T +    K          E ++ 
Sbjct: 117 EADDCIGTLARHYSQNEDMDVMILSGDHDLLQLVDERTQVIIMKKGHGNYMVYTPETLLS 176

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           + G+ P ++V L+ L GD+ DN PG+ GIG KTA  L+QEY ++E IL N  ++     R
Sbjct: 177 EKGLKPRQVVDLKGLMGDASDNYPGVRGIGEKTALKLVQEYDSIEGILENLDQLTPS-VR 235

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           + I    +   LSRKL  +  DVP+   L+  +L   +  +++   + LE   L
Sbjct: 236 KKIESDLDMLHLSRKLAKIHCDVPVACALDSCLLT-LDHVQIVDKFEQLEMKSL 288


>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 585

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 129/572 (22%), Positives = 243/572 (42%), Gaps = 59/572 (10%)

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490
           + + +           K     +K     +     GHN+KYD   L +Y I      D M
Sbjct: 41  VGLESGPIYVIDFLFVKRAPELIKDIIAKKGVA--GHNLKYDLKYLMKYDIHPYTTFDTM 98

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           + + ++   R      S+A  +  +T + I K  + S    K        +A ++  V+ 
Sbjct: 99  VGAQLIGLNRV-----SLASVYNHFTGESIDKKEQFSNWSSKELTESQIFYAAKDVEVLR 153

Query: 551 QLWLLLRPKLIVE----------------KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            L+  L+ +L  E                 L   Y  ++   +  ++++E TGI ID   
Sbjct: 154 LLYEKLKNELNKEPTIIEILQKSRVAKVFGLESTYAIIEMGFVQELAKIEHTGIGIDTKE 213

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           ++ +  ++ K    L  N Y     + ++SSPK++G+ L   L        K       +
Sbjct: 214 IETMKKQLQKKTQELAMNFY--IKYRIDISSPKKVGEFLENHLNISLPRTDKDNIITDDS 271

Query: 655 QDLEQINCGDN---PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
             +E ++  +     +I ++LE+R+L K++   ++ L         R+H  +     +TG
Sbjct: 272 VLIEHLDYENEKAKDVISSVLEFRKLHKLQEKLSEILE---YNENNRIHPEFWQIGAVTG 328

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R++S  PN+QNIP       ++R    +      + AD+SQIELRI A   K   +  + 
Sbjct: 329 RMSSSRPNVQNIPR------ELRSILKAKDGYVFVIADFSQIELRIAAEYVKDEVMIDII 382

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPR 825
               D+H+  A+ I G ++E ++ + R+ AK  NF +IYGIS   L      +  + +  
Sbjct: 383 NKGEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKSLSLYARNSYGIDMSI 442

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA  + + +F  F GI  + E+ K  ++  G +            I      +      
Sbjct: 443 EEAKRFREVFFSTFQGIKAWHERIKKELKAKGEIR--------LKTIGG--KPMIAYTFT 492

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDH-----KLATKMLLQIHDELVFEVPEEEITTA 940
            A N PIQG+ A++ + +++   + L+            ++  +HDE+V E  E+     
Sbjct: 493 DAANYPIQGTGAELLKLSVLIFSQELKRAFPSIFHEVANVVNLVHDEIVVEAKEDYKEEV 552

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           S+++  SM+KA    +N  V ++  I +++ W
Sbjct: 553 SKLLEKSMKKAGSILLN-NVKIETEIVINHRW 583


>gi|3063700|emb|CAA18591.1| putative protein [Arabidopsis thaliana]
 gi|7270174|emb|CAB79987.1| putative protein [Arabidopsis thaliana]
          Length = 1548

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 121/511 (23%), Positives = 220/511 (43%), Gaps = 60/511 (11%)

Query: 488  DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            D+ ++ ++L      H   +I ++       E  ++   S                    
Sbjct: 1043 DMSIVIWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVA 1102

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
                L   L   L+ E+LL     ++ P+++V++ ME+ GI ID +   +    +   L 
Sbjct: 1103 QTRALCSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLR 1162

Query: 608  SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            SLE+  ++L+G  F+L +P  + ++LF +LK P       G+   +           + +
Sbjct: 1163 SLEKKAFELAGMTFSLHNPADIANVLFGQLKLPIPENQSKGKLHPS--------TDKHCL 1214

Query: 668  IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
              ++L + +        A      I K  +        AS        L+ N +++    
Sbjct: 1215 --DLLRYSEWLIAFPYIAFCF--FIIKDNRLFELLS--ASVEHEVEFKLDKNGRDVSSDA 1268

Query: 728  DLGQKIRRAFISP--PTKKLISADYSQIELRILAHIAKITPLY-QVFENSLDIHRMVAAE 784
            D  +   R F  P      L++ADYSQIELR++AH ++ + L  ++ +   D+  M+AA+
Sbjct: 1269 DRYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAK 1328

Query: 785  IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
              G   + VSP  R   K + + I+YG+   RLA QL     EA + I+ +   FP +  
Sbjct: 1329 WTGKAEDSVSPHDRDQTKRLIYGILYGMGANRLAEQLECTSDEAKEKIRSFKSSFPAVTS 1388

Query: 845  YIEKTKNFVRQNG--------------------------YVETIFGRRIHYDEINSPKSS 878
            ++ +T +F ++ G                          Y++T+ GRR    +I    + 
Sbjct: 1389 WLNETISFCQEKGWGCYRLFPLLFVLNAVLCVPLNHIFIYIQTLKGRRRFLSKIKFGNAK 1448

Query: 879  IRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-----------------KLATKML 921
             ++  +R A+N+  QGSAADI + AMI+++ ++ +                  K   ++L
Sbjct: 1449 EKSKAQRQAVNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSSSETRFHMLKGRCRIL 1508

Query: 922  LQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
            LQ+HDELV EV    +  A+ ++  SME A 
Sbjct: 1509 LQVHDELVLEVDPSYVKLAAMLLQTSMENAV 1539


>gi|333014002|gb|EGK33363.1| DNA polymerase I domain protein [Shigella flexneri K-227]
          Length = 223

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/199 (42%), Positives = 122/199 (61%), Gaps = 5/199 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +N L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
               AEK G  V I + DKD+ QLV+P   L +T+    +  E V+ K+G+PPE ++   
Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180

Query: 184 ALTGDSIDNIPGIPGIGYK 202
           AL GDS DNIPG+PG+G K
Sbjct: 181 ALMGDSSDNIPGVPGVGEK 199


>gi|239827422|ref|YP_002950046.1| 5'-3' exonuclease [Geobacillus sp. WCH70]
 gi|239807715|gb|ACS24780.1| 5'-3' exonuclease [Geobacillus sp. WCH70]
          Length = 292

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/288 (36%), Positives = 156/288 (54%), Gaps = 14/288 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           QK   L L+DG + ++R+FYAT L        DG+P NA+ GF   L   + + +     
Sbjct: 3   QKSQKLLLIDGMALLFRSFYATALYGNFMFTSDGIPTNAVYGFVKHLIASVHHIK----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H    +D  + TFR E++P YKANR + P  L+PQ  L +    AF IP I + G EAD
Sbjct: 59  THVVCCWDMGSATFRTEMFPMYKANRGEPPLELIPQFELAKHVVSAFDIPNIGVLGAEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T   + E   + I++ D+DL+QL+S T  +Y   K         +E   K+  I
Sbjct: 119 DCIGTLTKQWKDE-MDIAILTGDRDLLQLLSETVTVYLLDKGIGNYHIYTLERFRKEMEI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + V ++AL GD+ DN PG+ GIG KTA  L+++YG++E IL +   +  K +R+ + 
Sbjct: 178 LPSQWVDVKALMGDASDNYPGVRGIGEKTALKLVRQYGSIEGILEHLP-LLTKSQRQKLQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
           E+ E   LSRKL  +  D+PI + +E     D +  ++     ALEF 
Sbjct: 237 EHEEMLHLSRKLAKIYCDLPIALRIEEAKW-DVDKEKVEQAFLALEFK 283


>gi|255087648|ref|XP_002505747.1| predicted protein [Micromonas sp. RCC299]
 gi|226521017|gb|ACO67005.1| predicted protein [Micromonas sp. RCC299]
          Length = 953

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 134/553 (24%), Positives = 226/553 (40%), Gaps = 51/553 (9%)

Query: 463 LKIGHNIKYDKLVLHRYGISMRG----FEDIMLMSYVLDSGR-SSHDIASIAQKWLSYTR 517
             + H+ +     L +  + +        D   M+++          IA++  ++     
Sbjct: 391 PVVVHHAQAVTRELAKARVHVDPHALEVMDTRCMAWLAAPDDAHEGGIAAVTSRFNGVN- 449

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIE---NSNVILQLWLLLRPKLIV-EKLLHVYERLD 573
            +      ++   D++         +     ++++      L  +L     L     R +
Sbjct: 450 -DGSGGATTTNAFDRVGAGDETSDDVLGGLRADILAS--ASLAQRLRATAGLDPNVVRTE 506

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL--SGEKFNLSSPKQLGD 631
             +   + QME  G+  D   ++    ++ + L  +EE+       G + NL+SP+Q+ +
Sbjct: 507 GKVAAALGQMEHVGLGFDPSAVRAAVGDLRRKLAGIEESAAAAMPDGARVNLASPQQVAE 566

Query: 632 ILFTKLKFPSGAK-----TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYA 685
            L+  LK P  +       KT Q  T    L  +     +P+   +LE+R +SK   T A
Sbjct: 567 ALYGTLKLPPPSSNAQQGAKTAQLTTKDDALRSLRDKRLHPLPGLVLEYRAVSK---TIA 623

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
                    R +R+   ++   T TGRL+S  PN+Q +         +RRAF +PP K L
Sbjct: 624 MCNSYASMARGKRLRCDWNNTRTATGRLSSTNPNIQAVGKDETGEFSLRRAFSAPPGKVL 683

Query: 746 ISADYSQIELRILAHIAKITPLYQVFE----NSLDIHRMVAAEIFGVNIE-KVSPQMRRH 800
           ++ADYSQIELR+LAH+A    L  +      +  D+   +     G   E  V+ + R  
Sbjct: 684 LAADYSQIELRMLAHLAGDRGLVALLRRQITDGGDVFERIWNAGRGAPPETPVAKEDRDR 743

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK   + ++YG     LA +L      A   I  +F  FPG+  ++ +TK   R    V 
Sbjct: 744 AKRTVYGLLYGQGKTGLAEKLGCTGDVAQGLINAFFRAFPGVRAFVTRTKERARVEKRVV 803

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV------------- 907
              GR        S     R   ER A+N+ IQGSAAD+ + AM                
Sbjct: 804 LPSGRHRPLPGFASADQRERAGAERKAVNSLIQGSAADLMKIAMCRWLAAASPVGFEPTT 863

Query: 908 ----HKSLEDHKLATKMLLQIHDELVFEVPEE--EITTASQIIVHSMEKACLPKINLRVP 961
                 +     L  +++ QIHDEL+FE  +    +  A+Q++   ME+A      L VP
Sbjct: 864 TEHADVASTAATLPARLVAQIHDELLFECEDSPTAVRAAAQVVAACMERAVP---QLAVP 920

Query: 962 LKVNIKVSNNWQE 974
               + V   W E
Sbjct: 921 TPAKVSVGRTWAE 933


>gi|145346862|ref|XP_001417901.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578129|gb|ABO96194.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 671

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/428 (25%), Positives = 199/428 (46%), Gaps = 30/428 (7%)

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
           +   ++  +   +  ++  G+  D+    +     ++ +  LE       G   NL+S +
Sbjct: 236 LARDVEAKVAVALGVLQHHGVGFDRTRADEQRRAANRRVEELEREAQKCIGVDINLASAQ 295

Query: 628 QLGDILFTKLKFPSG----AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           Q+ D+L+ KLK P+      K       +T+ ++ Q     +   + +L  R   K ++ 
Sbjct: 296 QVADVLYNKLKLPTPSAHAMKGSKSSHLSTSVEVLQSLVKHHHFAQIVLNHRGALKERAM 355

Query: 684 YADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
             +   + +       R+HT ++   T TGRL+S  PN+Q +   T     +R  F++P 
Sbjct: 356 CDNYDKSAVIAADGRARIHTQWNNTKTATGRLSSSHPNIQQVGRGT-----MRNCFVAPT 410

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENS-LDIHRMVAAEIFGVNIEKVSPQM-RR 799
            +  I+ADYSQIELR+LAH++    L  +   +  D+   +     G+ ++  + +  R 
Sbjct: 411 GRTFIAADYSQIELRVLAHLSGDDRLISLLRQAKGDVFVAIWNAGKGLPLDAPAEKSTRD 470

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK   + I+YG     LA +L +P+SEA  YI  +   FP ++++I +      Q G V
Sbjct: 471 IAKRTAYGIVYGQHATGLAEKLGVPKSEAQGYIAAFHRAFPKVNQWITRVLQRAEQTGAV 530

Query: 860 ETIFG-RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL-- 916
                 R     +I+S   S R+  +R A+N  IQG+AAD+ + AM+    ++   +   
Sbjct: 531 TLPMSGRHRALPKIHSKVFSERSEAQRQAVNTIIQGTAADMMKTAMLRWTSAVGAGRFAN 590

Query: 917 ----------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
                        ++ QIHDEL+FEV E+ +   ++ + + ME A    I L VP  + +
Sbjct: 591 DVAPGSVNKKRVTLVAQIHDELLFEVDEDYVPECARAVKNVMENA----IKLAVPTPIKL 646

Query: 967 KVSNNWQE 974
            V  +W E
Sbjct: 647 AVGTSWGE 654


>gi|308068174|ref|YP_003869779.1| 5'-3' exonuclease [Paenibacillus polymyxa E681]
 gi|305857453|gb|ADM69241.1| Probable 5'-3' exonuclease [Paenibacillus polymyxa E681]
          Length = 298

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 148/294 (50%), Gaps = 16/294 (5%)

Query: 1   MQKEN--HLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M + N   + LVDG + ++RA+YAT     + R   G+P NAI GF    W  +Q     
Sbjct: 1   MTQRNEQSVMLVDGMALLFRAYYATAANGYIRRTKAGVPTNAIYGFIRYFWDAVQTFN-- 58

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H    +D    TFR E +  YK NR   P+ L+PQ  L+R  T + GIP I  +GF
Sbjct: 59  --PTHVICCWDMGGTTFRGEHFAAYKGNRADAPDDLIPQFTLIREVTDSLGIPNIGAEGF 116

Query: 116 EADDIIATYTYIAEK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIK 170
           EADD I T      + E   V I+S D DL+QLV   T +    K          E ++ 
Sbjct: 117 EADDCIGTLARHYSQNEDMDVMILSGDHDLLQLVDERTRVIIMKKGHGNYMVYTPETLLT 176

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           + G+ P ++V L+ L GD+ DN PG+ GIG KTA  L+QEY ++E IL N  ++     R
Sbjct: 177 EKGLKPRQVVDLKGLMGDASDNYPGVRGIGEKTALKLVQEYDSIEGILENLDQLTPS-VR 235

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           + I    +   LSRKL  +   VP+   L+  +L   +  +++   + LE   L
Sbjct: 236 KKIESDLDMLHLSRKLAEIHCGVPVACALDSCLLT-LDHVQIVDKFEQLEMKSL 288


>gi|330801495|ref|XP_003288762.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
 gi|325081196|gb|EGC34721.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
          Length = 489

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 132/476 (27%), Positives = 228/476 (47%), Gaps = 65/476 (13%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS- 617
           +    K  +++  ++  ++ + + ME  GI  ++ + +     I + +  L+   + L  
Sbjct: 11  QREDNKFFNIFLNIEMKILPIFAMMEYVGIGFNEKVSESGKHLIQRKIEYLDYKAHVLLP 70

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKT--------GQWKTTAQDLEQINCGDNPIIK 669
           G+ F+LSS   + +ILFT LK P     K+         Q+  T   + +     +P+  
Sbjct: 71  GKTFSLSSGDNVSEILFTDLKIPPPEIAKSTSRKNRLKKQYYLTNSVVLEQINHYHPLPS 130

Query: 670 NILEWRQLSKIKSTYADSLPNHI----NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            I E+R L+   S Y D L  ++    + +  R+++        TGR+A   PNLQNI  
Sbjct: 131 IISEYRVLTHHISHYIDVLGKYLFRSDHYQMDRIYSTIQQTIVPTGRIAMENPNLQNISH 190

Query: 726 KTDLGQ--------------------------------------------KIRRAFISPP 741
             D  +                                             IR AFI   
Sbjct: 191 PIDFKRAPEIDFSQESIKSFNESLDRFEYLSDEHYLSLLQMDKSCDVITVSIRNAFIPAN 250

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRR 799
             KL+S DY Q+ELRIL H+++   L ++F  ++  DI + VA ++  +  + V+   R+
Sbjct: 251 GCKLLSVDYGQLELRILTHLSQDPKLMEMFNCNINIDIFKYVAHQVGNIPYDSVTDSDRQ 310

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK + + I+YG+    +A++L IP  +A   ++ +   +  + EY+E  +  V QNGY+
Sbjct: 311 QAKHLVYGILYGMGIKSIASELHIPIEQARGKLENFKKTYNKLIEYLEMVEENVIQNGYI 370

Query: 860 ETIFGRRIHYDEINSPKSSIRNINE--RAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
            T+FGR  ++  I+S K     I++  RAA N+  QG+AADI + AMI +   L+ +   
Sbjct: 371 ATLFGRVRNFSNIHSCKIDNNEISKVKRAARNSIPQGTAADIAKMAMIKIQDELDKNHFK 430

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +M+LQ+HDE++FEVPE E+  ++QII +SME      + L V L + + +  NW 
Sbjct: 431 AQMILQLHDEILFEVPENELYQSAQIIKYSMENV----VKLSVSLPIKMSIGPNWG 482


>gi|51893817|ref|YP_076508.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51857506|dbj|BAD41664.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 283

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/286 (36%), Positives = 154/286 (53%), Gaps = 12/286 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDG   ++R F+A P ++    G PVNA+ GF +ML +LL   R     SH AV  D
Sbjct: 1   MLLVDG-GLMFRTFFALPPMT-DPKGRPVNAVYGFVSMLLRLLATLR----PSHVAVAAD 54

Query: 67  YP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            P A   R  +YP YKANRP+ P  L PQ  L+R    A  I  + ++G+EADD++ T  
Sbjct: 55  SPVAENRRAVLYPPYKANRPECPPDLAPQFALLREVLAALNITVVGVRGYEADDLMGTMA 114

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE---KIDIEHVIKKWGIPPEKMVCL 182
            +AE EG  V +++ D+D  QL+S  T +    +       D+   + +WGI P ++  L
Sbjct: 115 RMAEAEGMEVILLTGDRDAFQLLSGRTAVQYVKRLNQTITYDVARFVTEWGILPSQLADL 174

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           + L GD+ DNIPGI GIG KTA  LLQ+Y  LE +L +A   +  K R+ + E  E A L
Sbjct: 175 KGLAGDASDNIPGIRGIGPKTAVRLLQQYVTLEAVLAHAH-AQPGKLRQRLEEGREIALL 233

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           S++L  +   VP++       L D +     +  + L F  L+  +
Sbjct: 234 SKRLATIDRHVPVSCTPGACAL-DLDLDTGAAVFEELHFRSLLPSL 278


>gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 607

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 125/552 (22%), Positives = 217/552 (39%), Gaps = 90/552 (16%)

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
           G + +D +++ +K+      EI  S+   +            ++ E+S+  +Q +     
Sbjct: 59  GVTMNDFSALLKKYKVNFFDEIDASKGEGL-----------LYSAEDSDYAVQHYEY-WS 106

Query: 559 KLIVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           ++  +  +      +++ P   V+  ME  G+  D +L  Q   E         E I  +
Sbjct: 107 QIAAQIPRYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQI 166

Query: 617 SGEKFNL-------SSPKQLGDILFTKLKFPSGAKTKTGQW------------------- 650
           + E FN+           ++  ++F  LK P     KTG                     
Sbjct: 167 AKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLND 226

Query: 651 ----------------------------------KTTAQDLEQINCGDNPIIKNILEWRQ 676
                                             +   ++          +I  + + ++
Sbjct: 227 IDEEKYLGVSLPENWGNIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQK 286

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            + + S++      ++N  + R+H  YS   T TGRL S  PN QN+P   +   KIR  
Sbjct: 287 YTTLLSSHIIGREKYLNFMSGRIHAGYSPF-TETGRLNSFNPNGQNVPRPDNDEFKIRNF 345

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F+  P K L   D+S  ELR++A  +    + ++F    D+HR  A+ + G +  ++  +
Sbjct: 346 FVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAEIVKK 405

Query: 797 MRRHAKTINFSIIYGISPFRLA------TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            R  AK  NF I YG +   L         +R    E A  +      +  I EY  K  
Sbjct: 406 ERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIV 465

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              R+ GYV+TI+G       INS     R   ER A N P+QGSAADI ++    +++S
Sbjct: 466 LEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGSAADIMKKVQNEIYES 525

Query: 911 LEDHK-----LATKMLLQIHDELVFEV--PEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           +   +      +  M+ QIHDE++FE+    E +    + I   ME+  +P     VP++
Sbjct: 526 IGKQEGVLSHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFP--VPIE 583

Query: 964 VNIKVSNNWQEE 975
               V   W E+
Sbjct: 584 AEGSVGYRWGEK 595


>gi|212639099|ref|YP_002315619.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Anoxybacillus flavithermus WK1]
 gi|212560579|gb|ACJ33634.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Anoxybacillus flavithermus WK1]
          Length = 277

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/283 (34%), Positives = 155/283 (54%), Gaps = 13/283 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M++E HL L+DG + ++R+FYAT P       G+P NA+ G      K ++ +      +
Sbjct: 1   MERE-HLLLIDGMALLFRSFYATAPRWMMNSRGVPTNAVYGVV----KHIEAATNALQPT 55

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H    +D  + TFR E +PDYKANR + P  L+PQ  L +      GIP I + G EADD
Sbjct: 56  HVVCCWDMGSTTFRTEWFPDYKANRGEPPHELIPQFDLAKEVVAMLGIPNIGVLGAEADD 115

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            I +      +E   ++I++ D+DL QL+S    +Y   K     E   ++  I++ GI 
Sbjct: 116 CIGSLVKQYREE-MRISIMTGDRDLFQLLSERVTVYLLAKGIGNYEAYTLDRFIEEKGIQ 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P++++ ++AL GD  DN PG+ GIG K A  L+Q+YG++E I+ N + +  K +++ I E
Sbjct: 175 PQQLIDVKALMGDPSDNYPGVRGIGEKQAVKLIQQYGSIEGIIANLANL-TKAQQQKITE 233

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           + +   LSRKL  +  D+PI + LE     D    R    L+A
Sbjct: 234 HLDLLHLSRKLAAIHCDIPIQLELEEAKWHD-ERKRFREVLEA 275


>gi|89099826|ref|ZP_01172698.1| hypothetical protein B14911_06883 [Bacillus sp. NRRL B-14911]
 gi|89085384|gb|EAR64513.1| hypothetical protein B14911_06883 [Bacillus sp. NRRL B-14911]
          Length = 300

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 156/305 (51%), Gaps = 16/305 (5%)

Query: 1   MQKENH--LFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M  EN   L LVDG + ++RAF+AT           G+P NAI GF    +  + + +  
Sbjct: 1   MMNENKPSLLLVDGMALLFRAFFATAVTGQFMINSKGVPTNAIQGFLKHFFTAVSSFK-- 58

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              +H AV +D  + TFR E++  YKANR + P  LLPQ  LV+ A +A  IP I + GF
Sbjct: 59  --PTHVAVCWDMGSKTFRTEMFSGYKANRSEAPIELLPQFDLVKEAVEAMDIPNIGLAGF 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKK 171
           EADD I T     + E   V+I++ D+D++QL+     +    K          +   ++
Sbjct: 117 EADDCIGTIARNLQPE-ARVSILTGDQDILQLLDKDISVILLKKGFGNYLVHTADTFYEE 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            GI P +M+ L+A  GD  DN PG+ GIG KTA  LLQ++ +++ ++ N  ++  K ++ 
Sbjct: 176 KGITPRQMIDLKAFMGDPSDNYPGVKGIGEKTALKLLQQFEHVDGVIENLDKL-TKAQKA 234

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            I E  E   LSR+L  ++ DVP+   L+  + +  N  + +     LE   L   +   
Sbjct: 235 KIEEGLEMLHLSRQLAEIKCDVPVQCVLDDAVYK-INQQKAMEKFSELELRGLYRHLEKL 293

Query: 292 YDCDA 296
            +  +
Sbjct: 294 EESKS 298


>gi|330802475|ref|XP_003289242.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
 gi|325080687|gb|EGC34232.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
          Length = 1200

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 151/627 (24%), Positives = 258/627 (41%), Gaps = 106/627 (16%)

Query: 445  LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSS 502
            L +E L ++ +  EN    KI +N         +    M+     DI + +++L+S   +
Sbjct: 554  LVEEKLKFMVEILENGLIKKISYNCSDGYKPFIKQYPYMKPINSFDIKIAAWLLNSDGGN 613

Query: 503  HDIASIAQKWLSYTRKEILK----------------SRKSSIPIDKISDSQVQEHAI--E 544
            +  +   +K   Y + E +K                  K  I  +     +   +    +
Sbjct: 614  NGYSF--EKVQEYGKDESIKTIQNISNRNIMQNQSEKIKKLINEENEFSKENTNYGSFSQ 671

Query: 545  NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            +    L+++L+L+  L+ +K L      +  ++ ++S+ME+ GI ++  +L Q    + +
Sbjct: 672  DIVYSLKIYLVLK-NLLYDKDLSYNFIEEMSVVSLISKMELYGILLETKILNQYKKLLDE 730

Query: 605  NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
               +L E  Y       N  S  Q+  +++  LK        T   K +  +++ +N   
Sbjct: 731  KSANLCE--YFRDNNLLNPRSIPQVTKVIYQDLKLKLPHPPPTKVDKKSLNEIKALNPNQ 788

Query: 665  NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
               I N+L +R L KI  TY  +     +    + H   +                T TG
Sbjct: 789  EEFINNLLIYRNLEKINKTYISAYLELADSYYDKFHQNQNESNKKAFIKCDWLQCGTSTG 848

Query: 712  RLASLEPNLQNIPIKT-------------------------------------------- 727
            RL+S  PN+QN+   T                                            
Sbjct: 849  RLSSCNPNMQNVCRNTSIISFDDEEDQASSQIDDLFLMTHIEDDQNQNQNHNQNQNQNQN 908

Query: 728  DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                 IR AFIS     +++ DY+QIELR+++H +    L   F N+ D+ R +A+++  
Sbjct: 909  QETINIRDAFISRDGYTMLAYDYNQIELRVMSHFSNDKHLINYFNNNQDVIRRMASKLLN 968

Query: 788  VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
              I  V+   R   K + + I+YGI P  L   L+I  S A   I  ++  FP I  +I 
Sbjct: 969  KEINDVTTDEREKTKRVVYGIMYGIGPQSLGKLLKISTSAAELLINNFYKEFPQISSFIT 1028

Query: 848  KTKNFVRQN-GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
             TKN ++QN   V TI GR     EI    S   +I +R ++N  IQGS+ADI +++M+ 
Sbjct: 1029 TTKNSLKQNDPEVRTISGRIRKLGEI--KNSFDISIAKRRSVNTIIQGSSADIIKKSMVK 1086

Query: 907  VHKSLED------------------HKLATKMLLQIHDELVFEVPEEEITTASQI--IVH 946
            ++    D                  ++++ + LLQIHDEL+FEVP   I        I +
Sbjct: 1087 INNFFGDICSIFNNNNNNNNSNNNNNQISPRFLLQIHDELIFEVPTFLIEEHRVDLYIKY 1146

Query: 947  SMEKACLPKINLRVPLKVNIKVSNNWQ 973
             ME       NL+V LK ++K  + W 
Sbjct: 1147 LMESV-SKDFNLKVDLKTSLKSGHRWG 1172


>gi|240142580|ref|YP_002967093.1| hypothetical protein MexAM1_META2p0958 [Methylobacterium extorquens
           AM1]
 gi|240012527|gb|ACS43752.1| Hypothetical protein MexAM1_META2p0958 [Methylobacterium extorquens
           AM1]
          Length = 729

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 133/370 (35%), Positives = 189/370 (51%), Gaps = 23/370 (6%)

Query: 1   MQKENH-------LFLVDGSSFIYRAFY----ATPLLS-RKHDGLPVNAIAGFCNMLWKL 48
           M++EN        + LVDGS F++R ++      P  + R  DG P  AI  FC  L   
Sbjct: 1   MERENAPVGPGDVVALVDGSFFMHRTYHLAASGDPARNLRPSDGFPNGAIRKFCERLLGF 60

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIP 108
           L+     +  SH  + FD+   + R+E++P YKANRP+ P  L    PL R A +AFG  
Sbjct: 61  LEAGFGGTRPSHLGIFFDHSRRSHRSELFPGYKANRPEPPADLEALKPLFRDAVRAFGYG 120

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TV 158
            IE + +EADD+IATY   A   G  V ++ +DKDL+QLV PT   +D            
Sbjct: 121 CIEAENYEADDLIATYATAASARGAHVLMVGSDKDLLQLVGPTVFAFDFEYGVPGRSGYR 180

Query: 159 KEEKIDIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
                D   V   W G PPE++  + AL GD  DN+PG+PGIG KTAA L+ EYG+LE +
Sbjct: 181 PARLFDAAAVAAAWEGTPPERLGDVLALMGDQTDNVPGVPGIGMKTAAKLVAEYGDLETL 240

Query: 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
           L NA  IKQ  RR+ +L +AETARLSR+LV L  + P+ +PL+ L+L   +   L  F+ 
Sbjct: 241 LANADAIKQPGRRDALLAHAETARLSRRLVELERNAPMPVPLDDLLLGWPDPDVLFPFVN 300

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
           A+EF+ L  ++   Y  +A++              G A    +  D  +        +  
Sbjct: 301 AMEFSWLGRKLGQLYQVEASSYPSDPRFAAPVAESGAAGLQALRYDAVLPAEGAPPFASD 360

Query: 338 TSKINSEQTP 347
           T+       P
Sbjct: 361 TAHCAVSAMP 370


>gi|157265423|ref|YP_001467981.1| DNA polymerase I [Thermus phage P74-26]
 gi|156905318|gb|ABU96961.1| DNA polymerase I [Thermus phage P74-26]
          Length = 728

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 137/628 (21%), Positives = 259/628 (41%), Gaps = 85/628 (13%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           +D  +     +A+  +D+      K     +      + D        ++ +  + K   
Sbjct: 114 LDQTYGDDTMVALHLVDENHPLGLKEWAKTLLGLEEVNADIEPPELTDEDQVEAVSK--N 171

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
              + K  H +K D          ++  +D  L   V + G S   +  +  +     + 
Sbjct: 172 GRRYKKKVHKLKPDW---------LQRLKDAFLA--VHNGGVSYGALYKLLNRAFQQLKN 220

Query: 519 EILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLL------LRPKLIVEKLLHVYE 570
             + S   S P             +A++++   L LW        L PKL       +Y 
Sbjct: 221 RGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTLALWEHVEVFFELHPKLH-----TLYR 275

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN-------- 622
            ++ P+ DV+++    G+ +D++ L+++   I   +    +   +L              
Sbjct: 276 EIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEKAQEAQELLKALIGSKASEFTN 335

Query: 623 -LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC------GDNPIIKNILEWR 675
            L+SP+QL  IL+  L +P    T  G   T+   + ++           P+ K  LE +
Sbjct: 336 PLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKLLTLSPKDKKKAPLAKAFLEAK 395

Query: 676 Q----LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-- 729
           Q    L K+ STY DS+   ++ +  R+HT ++   T++GR++S  PNLQN+P       
Sbjct: 396 QAHEGLKKLLSTYTDSILEEVDPQG-RLHTNFNTVGTVSGRMSSSNPNLQNLPRLLPEEV 454

Query: 730 -------GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                  G  IR+AF++ P    +SADY+ +EL + A ++    +  +     D+H   A
Sbjct: 455 AEKPYLQGIDIRKAFVADPGYIFVSADYASMELVVCAAVSGDPTMRDLLNQGRDLHAYTA 514

Query: 783 AEIFGVNIE-------KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
              F V ++       +     R+ AK +NF++IYG + F L         EA   I+ Y
Sbjct: 515 RYAFKVGLDLDDKAFKEQYKDYRQKAKVVNFALIYGGTEFTLIKNFGFSEEEAKQLIQGY 574

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETI---FGRRIHYDEI--------------NSPKSS 878
           F  +P +  ++E+    + + G+VE     + +R+   +               N P + 
Sbjct: 575 FEAYPVVKTWMEEVYRELEEKGFVEYPIYGYIKRMDLPQALRKLPKDKWPLVLNNDPDAR 634

Query: 879 IRNINE-RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            +     R+  NA IQG +A + + A++ + ++ E   L  ++++Q+HDE+V    EE  
Sbjct: 635 KQYYASLRSCQNALIQGFSAFVVKDAIVQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHA 694

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVN 965
              +QI+V  ME+     +     LK  
Sbjct: 695 ERVAQIMVEKMEREVNGVL-----LKAE 717



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 381 VQKLETIGSASFKIITDTMDAFHS-----KPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
           +  +      +    T   + F+      + + +AI+T   +   ++       D  +  
Sbjct: 16  LDAIAQAPRVALDTETYGSNPFNLYLPDFRLVGVAIATSPTE---AWYFPVDHQDFLLRY 72

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGF--EDIMLM 492
              +  +  + + +L  LK+         + HN  YD+ VL     I +     +D M+ 
Sbjct: 73  QPANLPREAVRQAVLEALKR-------PVVYHNAAYDRRVLAVTLDIPLDQTYGDDTMVA 125

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTR 517
            +++D       +   A+  L    
Sbjct: 126 LHLVDEN-HPLGLKEWAKTLLGLEE 149


>gi|157265305|ref|YP_001467864.1| DNA polymerase I [Thermus phage P23-45]
 gi|156905200|gb|ABU96844.1| DNA polymerase I [Thermus phage P23-45]
          Length = 728

 Score =  274 bits (700), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 137/628 (21%), Positives = 259/628 (41%), Gaps = 85/628 (13%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           +D  +     +A+  +D+      K     +      + D        ++ +  + K   
Sbjct: 114 LDQTYGDDTMVALHLVDENHPLGLKEWAKTLLGLEEVNADIEPPELTDEDQVEAVSK--N 171

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
              + K  H +K D          ++  +D  L   V + G S   +  +  +     + 
Sbjct: 172 GRRYKKKVHKLKPDW---------LQRLKDAFLA--VHNGGVSYGALYKLLNRAFQQLKN 220

Query: 519 EILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLL------LRPKLIVEKLLHVYE 570
             + S   S P             +A++++   L LW        L PKL       +Y 
Sbjct: 221 RGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTLALWEHVEVFFELHPKLHA-----LYR 275

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN-------- 622
            ++ P+ DV+++    G+ +D++ L+++   I   +    +   +L              
Sbjct: 276 EIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEKAQEAQELLKALIGSKASEFTN 335

Query: 623 -LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC------GDNPIIKNILEWR 675
            L+SP+QL  IL+  L +P    T  G   T+   + ++           P+ K  LE +
Sbjct: 336 PLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKLLTLSPKDKRKAPLAKAFLEAK 395

Query: 676 Q----LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-- 729
           Q    L K+ STY DS+   ++ +  R+HT ++   T++GR++S  PNLQN+P       
Sbjct: 396 QAHEGLKKLLSTYTDSILEEVDPQG-RLHTNFNTVGTVSGRMSSSNPNLQNLPRLLPEEV 454

Query: 730 -------GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
                  G  IR+AF++ P    +SADY+ +EL + A ++    +  +     D+H   A
Sbjct: 455 AEKPYLQGIDIRKAFVADPGYIFVSADYASMELVVCAAVSGDPTMRDLLNQGRDLHAYTA 514

Query: 783 AEIFGVNIE-------KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
              F V ++       +     R+ AK +NF++IYG + F L         EA   I+ Y
Sbjct: 515 RYAFKVGLDLDDKAFKEQYKDYRQKAKVVNFALIYGGTEFTLIKNFGFSEEEAKQLIQGY 574

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETI---FGRRIHYDEI--------------NSPKSS 878
           F  +P +  ++E+    + + G+VE     + +R+   +               N P + 
Sbjct: 575 FEAYPVVKTWMEEVYRELEEKGFVEYPIYGYIKRMDLPQALRKLPKDKWPLVLNNDPDAR 634

Query: 879 IRNINE-RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            +     R+  NA IQG +A + + A++ + ++ E   L  ++++Q+HDE+V    EE  
Sbjct: 635 KQYYASLRSCQNALIQGFSAFVVKDAIVQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHA 694

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVN 965
              +QI+V  ME+     +     LK  
Sbjct: 695 ERVAQIMVEKMEREVNGVL-----LKAE 717



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 381 VQKLETIGSASFKIITDTMDAFHS-----KPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
           +  +      +    T   D F+      + + +AI+T   +   ++       D  +  
Sbjct: 16  LDAIAQAPRVALDTETYGSDPFNLYLPDFRLVGVAIATSPTE---AWYFPVDHQDFLLRY 72

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGF--EDIMLM 492
              +  +  + + +L  LK+         + HN  YD+ VL     I +     +D M+ 
Sbjct: 73  QPANLPREAVRQAVLEALKR-------PVVYHNAAYDRRVLAVTLDIPLDQTYGDDTMVA 125

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTR 517
            +++D       +   A+  L    
Sbjct: 126 LHLVDEN-HPLGLKEWAKTLLGLEE 149


>gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 132/630 (20%), Positives = 223/630 (35%), Gaps = 148/630 (23%)

Query: 490 MLMSYVLDS---GRSSHDIASIAQKWL--SYTRKEILKS------RKSSIPIDKISDSQV 538
           M M+ + +S   G+ S+ + S++++        KEI               ID       
Sbjct: 1   MHMARLWESSRVGKGSYSLESLSEELYIRKRPYKEIFGKPHIKRDGMQGKTIDVPPVIVA 60

Query: 539 Q--------------------EHAIENSNVILQLWLLLRPKLIVE--------------K 564
                                +++  ++     +   L   L                  
Sbjct: 61  FSLSPHPQDLQRGSATRSAWIDYSAFDAEATWHVRKELESLLREMFWTSESLNGALSELS 120

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQID-----QDLLKQVSAEISKNLLSLEENIYDLSGE 619
           +   Y R  +    ++  ME  GI +D      ++ ++  A + K     +       G 
Sbjct: 121 MWDFYRRYYRDFGQLLVNMERRGIHVDVARHLPEIEREARAALEKARNQFKSWAVAEGGS 180

Query: 620 KF---NLSSPKQLGDILF-----------------------------------------T 635
                N+ S  Q+  +LF                                          
Sbjct: 181 DLLFMNVHSTAQIQQLLFAPGFRGGRAGLPREREFSVENTTGFVEPGKKKPLKNRTILIR 240

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI--------------------------IK 669
            L  P  + T+ G  +  A  ++++    +                            + 
Sbjct: 241 GLGIPPISFTEKGLPQCNAATIQELAGKIDEENVEKSEFGKAFEALGGGDRGKAACLALN 300

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            +     +  + +T+   L +  +   QRVH   +L +T TGRL+S  PNLQN P     
Sbjct: 301 ALSRVNSIETMLNTFILPLQSVADAE-QRVHCSLNL-NTETGRLSSRNPNLQNQPALEKD 358

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
              IR+AF++ P   L+ +DY Q+ELR+LAH+ K   + + F    D H   A  ++   
Sbjct: 359 VYFIRKAFMAKPGNILLVSDYGQLELRVLAHMTKCKAMIEAFRLGGDFHSRTALSMYDYI 418

Query: 790 IEKVSP------------------------QMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            E ++                           RR AK +NFS+ YG +   L     +  
Sbjct: 419 KEDIAKGTCLLEWDSSKGEPPAPLLKHKYASERRQAKILNFSLAYGKTAHGLQKDFGVSL 478

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA + + +++   P +  + E T    ++ G+  T+ GR     +INS          R
Sbjct: 479 EEAKEVLAKWYKERPEVKRWQELTIQTAKETGFTRTLMGRYRPLPDINSKNKWKEGHACR 538

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           AAIN PIQG AADI   AM+ + K     +L  +MLLQIHDE++ E P E +  A + +V
Sbjct: 539 AAINTPIQGGAADIVMMAMLKIEKDERLRRLGFEMLLQIHDEVILEGPIENVAEAKKCLV 598

Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
             M         L V L V+   + +W E 
Sbjct: 599 EDMMHPFAR--PLLVDLVVDCNAAPSWYEA 626


>gi|197294838|ref|YP_001799379.1| DNA polymerase I [Candidatus Phytoplasma australiense]
 gi|171854165|emb|CAM12158.1| DNA polymerase I [Candidatus Phytoplasma australiense]
          Length = 676

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 157/287 (54%), Gaps = 14/287 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPL----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           HL LVDG+S ++RA++AT      L +   G+  NA+  F  M  K+L+ ++      + 
Sbjct: 3   HLVLVDGNSLVFRAYHATANNGKKLLQNKKGVYTNALLSFIKMFEKILEQTKN-----YI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD    T R+++Y +YK  RP+ P+ L+ Q+PL++      G+       FEADDII
Sbjct: 58  LVAFDTHHPTKRHQMYDNYKKGRPETPQELIDQIPLIKKYLTLKGVKHHFQAEFEADDII 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T   +A  +   V+I S+D+DL+QLV   T +Y   K     +  + + +++++G+   
Sbjct: 118 GTLAKMASNKNIKVSIYSSDQDLLQLVDTNTSVYLIKKGLKLIKHYNPKTLLEEYGLKEY 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +M+  +AL GDS DNI G+ GIG KTA  LLQ Y NL+N+L +   IK    +E I    
Sbjct: 178 QMIDYKALMGDSSDNIKGVAGIGPKTAKNLLQTYDNLDNLLSHLDAIKPS-LKEKINNCM 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           E  +LS+ L  + T VP+   LE   ++  +   L  F + ++F +L
Sbjct: 237 EDLKLSKILTTIDTKVPLPFELEQTEIKHMSSFELQDFYQEMDFKRL 283


>gi|86563272|ref|NP_498250.3| POLQ (DNA polymerase theta) homolog family member (polq-1)
            [Caenorhabditis elegans]
          Length = 1661

 Score =  273 bits (697), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 134/577 (23%), Positives = 247/577 (42%), Gaps = 51/577 (8%)

Query: 408  AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIG 466
             IAI T                        +S  K  +     L +LK            
Sbjct: 1124 GIAIRTDAGNTFIPLLETFGGEPSPASKYFESFSKCIIPLNTRLEFLKTL--AVTVEMYI 1181

Query: 467  HNIKYDKLVLHRYGISMRGFEDIMLMSYV-----LDSGRSSHDIASIAQKWLSYTRKEIL 521
             +++   L+  ++GI +   + + + +Y+     ++   +S+ +  +  ++         
Sbjct: 1182 SSMEDAFLIFEKFGIKIFRLKVVRIAAYLNNVIDVEQEENSNFLPILMDRY--------- 1232

Query: 522  KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
                       I D ++++    + +        L+P            +L+      V 
Sbjct: 1233 ----------SILDPEIRKTCSSSLHKAAVEVYSLKPIFEKMCCSGASLQLEMESCQTVL 1282

Query: 582  QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-- 639
             +  +GI  DQ L      +I K + +LEENI+ L+  KFN+ S  ++ ++LF +L    
Sbjct: 1283 NIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNEVANVLFYRLGLIY 1342

Query: 640  -PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
              +       +   T + + +     +PI+  ILE+RQ+    +     L   I      
Sbjct: 1343 PETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCLMPLAKFI-----G 1397

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                +    T TGR+ +  PNLQN+P + +  G   R+ FI+     LI ADY Q+ELR+
Sbjct: 1398 RIHCWFEMCTSTGRILTSVPNLQNVPKRISSDGMSARQLFIANSENLLIGADYKQLELRV 1457

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            LAH++  + L  +  +  D+   ++ +      + V        K + + +IYG+    L
Sbjct: 1458 LAHLSNDSNLVNLITSDRDLFEELSIQW-NFPRDAV--------KQLCYGLIYGMGAKSL 1508

Query: 818  ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
            +   R+   +A   +K +F  FPG+  YI +TK  V +   + TI GRR       S   
Sbjct: 1509 SELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKVCKEEPISTIIGRRTIIKA--SGIG 1566

Query: 878  SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
              R   ER A+N  IQGSA++I + A++ +   +++     +++L IHDE++ E PE  +
Sbjct: 1567 EERARIERVAVNYTIQGSASEIFKTAIVDIESKIKE--FGAQIVLTIHDEVLVECPEIHV 1624

Query: 938  TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              AS+ I + M+ A      LRVP++V++K   +W +
Sbjct: 1625 AAASESIENCMQNALSHL--LRVPMRVSMKTGRSWAD 1659


>gi|116517384|gb|ABJ99064.1| Hypothetical protein W03A3.2 [Caenorhabditis elegans]
          Length = 1540

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 134/577 (23%), Positives = 247/577 (42%), Gaps = 51/577 (8%)

Query: 408  AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIG 466
             IAI T                        +S  K  +     L +LK            
Sbjct: 1003 GIAIRTDAGNTFIPLLETFGGEPSPASKYFESFSKCIIPLNTRLEFLKTL--AVTVEMYI 1060

Query: 467  HNIKYDKLVLHRYGISMRGFEDIMLMSYV-----LDSGRSSHDIASIAQKWLSYTRKEIL 521
             +++   L+  ++GI +   + + + +Y+     ++   +S+ +  +  ++         
Sbjct: 1061 SSMEDAFLIFEKFGIKIFRLKVVRIAAYLNNVIDVEQEENSNFLPILMDRY--------- 1111

Query: 522  KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
                       I D ++++    + +        L+P            +L+      V 
Sbjct: 1112 ----------SILDPEIRKTCSSSLHKAAVEVYSLKPIFEKMCCSGASLQLEMESCQTVL 1161

Query: 582  QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-- 639
             +  +GI  DQ L      +I K + +LEENI+ L+  KFN+ S  ++ ++LF +L    
Sbjct: 1162 NIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNEVANVLFYRLGLIY 1221

Query: 640  -PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
              +       +   T + + +     +PI+  ILE+RQ+    +     L   I      
Sbjct: 1222 PETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCLMPLAKFI-----G 1276

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                +    T TGR+ +  PNLQN+P + +  G   R+ FI+     LI ADY Q+ELR+
Sbjct: 1277 RIHCWFEMCTSTGRILTSVPNLQNVPKRISSDGMSARQLFIANSENLLIGADYKQLELRV 1336

Query: 758  LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            LAH++  + L  +  +  D+   ++ +      + V        K + + +IYG+    L
Sbjct: 1337 LAHLSNDSNLVNLITSDRDLFEELSIQW-NFPRDAV--------KQLCYGLIYGMGAKSL 1387

Query: 818  ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
            +   R+   +A   +K +F  FPG+  YI +TK  V +   + TI GRR       S   
Sbjct: 1388 SELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKVCKEEPISTIIGRRTIIKA--SGIG 1445

Query: 878  SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
              R   ER A+N  IQGSA++I + A++ +   +++     +++L IHDE++ E PE  +
Sbjct: 1446 EERARIERVAVNYTIQGSASEIFKTAIVDIESKIKE--FGAQIVLTIHDEVLVECPEIHV 1503

Query: 938  TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              AS+ I + M+ A      LRVP++V++K   +W +
Sbjct: 1504 AAASESIENCMQNALSHL--LRVPMRVSMKTGRSWAD 1538


>gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis]
          Length = 241

 Score =  271 bits (694), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 104/241 (43%), Positives = 157/241 (65%), Gaps = 2/241 (0%)

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+ +      PI+++IL +RQL+K++STY + L   I   T ++HT Y    T TGR
Sbjct: 1   TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTGR 60

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIPI+ + G+KIR+AF+      KL ++DYSQIELR+LAHI+    L + F
Sbjct: 61  LSSVDPNLQNIPIRMEEGRKIRQAFVPQQEGWKLFASDYSQIELRVLAHISGDEHLREAF 120

Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               DIH   A  +FG+ N E V+  +RR AK +NF ++YGIS + L+  L I R  A +
Sbjct: 121 LEGQDIHTSTAMHVFGIENPEDVTANLRRQAKAVNFGVVYGISDYGLSQNLNITRKAAQE 180

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF ++PG+ +++E      ++NGYVET+F RR +  +I++   ++R+  ER AIN+
Sbjct: 181 FIDRYFDKYPGVKQFMEDIVKEAKENGYVETLFHRRRYLPDIHNRNFNLRSFAERTAINS 240

Query: 891 P 891
           P
Sbjct: 241 P 241


>gi|152975115|ref|YP_001374632.1| 5'-3' exonuclease [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023867|gb|ABS21637.1| 5'-3' exonuclease [Bacillus cytotoxicus NVH 391-98]
          Length = 288

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 97/283 (34%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   NKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAAQTIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAQLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKKYCSE-AEVYILTGDTDLLQLVDTNVTVMLLRKGVGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N S +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVAAVLENISSL-TKAQRTKIENDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   LS +L  +  +VPI+  LE   + + +  ++ S    + 
Sbjct: 236 ENLNLSLQLAEIHCEVPISCSLEE-SVHEIDESKMRSVCNQMN 277


>gi|23099156|ref|NP_692622.1| 5'-3' exonuclease [Oceanobacillus iheyensis HTE831]
 gi|22777384|dbj|BAC13657.1| 5'-3' exonuclease [Oceanobacillus iheyensis HTE831]
          Length = 290

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 149/287 (51%), Gaps = 14/287 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R F+AT           G+P N +  F   L   +Q        +H 
Sbjct: 4   NKVLLVDGMALLFRGFFATSFRGNFMYTSKGVPTNGVYQFLRYLMDSVQKFE----PTHV 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E++  YKANR + P+ L+PQ  LV+   +AF +P I ++ FEADD I
Sbjct: 60  ICCWDMGSKTFRTELFAGYKANRDEPPKELIPQFDLVKEVVEAFNMPNIGLENFEADDCI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T  +    E   VT+++ D+DL+QLV     +    K     E  D ++  +K G+ P+
Sbjct: 120 GTLAHAYSLEN-EVTVLTGDQDLLQLVKENIRIAIMRKGQGNYEVFDQDNFYEKKGLSPK 178

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ L+ L GDS DN PG+ GIG KTA  LLQEY  ++++L N  ++  K  +  I    
Sbjct: 179 QIIDLKGLMGDSSDNYPGVKGIGEKTAIKLLQEYETIDDLLNNIEKL-PKGVQAKINANL 237

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           +   LSR L  ++ DVPI+  L+     + N     + L  LEF  +
Sbjct: 238 DMLHLSRSLAEIKCDVPISCSLDT-SEWNVNLETATNKLNELEFKNI 283


>gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii]
          Length = 241

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 103/241 (42%), Positives = 156/241 (64%), Gaps = 2/241 (0%)

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           TA D+ +      PI+++IL +RQL+K++STY + L   I   T ++HT Y    T TGR
Sbjct: 1   TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTGR 60

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVF 771
           L+S++PNLQNIPI+ + G+KIR+AF+      KL ++DYSQIELR+LAHI+    L + F
Sbjct: 61  LSSVDPNLQNIPIRMEEGRKIRQAFVPQQAGWKLFASDYSQIELRVLAHISGDEHLQEAF 120

Query: 772 ENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
               DIH   A  +FG+   E V+  +RR AK +NF ++YGIS + L+  L I R  A +
Sbjct: 121 LEGQDIHTSTAMRVFGIEKPEDVTANLRRQAKAVNFGVVYGISDYGLSQNLNITRKAAQE 180

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           +I RYF ++PG+ +++E      ++NGYVET+F RR +  +I++   ++R+  ER AIN+
Sbjct: 181 FIDRYFEKYPGVKQFMEDIVKEAKENGYVETLFHRRRYLPDIHNRNFNLRSFAERTAINS 240

Query: 891 P 891
           P
Sbjct: 241 P 241


>gi|291532675|emb|CBL05788.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Megamonas
           hypermegale ART12/1]
          Length = 240

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 93/230 (40%), Positives = 133/230 (57%), Gaps = 10/230 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +    ++DGSS +YRAF+A PLL+    G+  NAI GF NML K+L   + ++      
Sbjct: 15  NKKRFIIIDGSSLMYRAFFALPLLTSSS-GIYTNAIMGFANMLGKILTEYKPDN----IV 69

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR ++Y +YK  R K P+ L  Q+PL+R   +A GI  IE   +EADDII 
Sbjct: 70  VAFDKSRQTFRTQMYAEYKGQREKTPDELKSQIPLLREFLEALGIAFIEKDNYEADDIIG 129

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPE 177
           T    A  + +   I++ DKD +QL+ P   +  T +     +  D E   +K+ G+ P 
Sbjct: 130 TLATKAASQDYEALIVTGDKDALQLIRPNLKVMLTKRGIMDMQIFDEEAFKEKYAGLEPI 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           K++ ++AL GDS DNIPG+PGIG KTA  LL +Y +LEN+L N   +  K
Sbjct: 190 KLIDIKALMGDSSDNIPGVPGIGEKTALKLLSQYQDLENLLNNIDNVSGK 239


>gi|229160633|ref|ZP_04288627.1| 5'-3' exonuclease [Bacillus cereus R309803]
 gi|228622832|gb|EEK79664.1| 5'-3' exonuclease [Bacillus cereus R309803]
          Length = 299

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 13  KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 68

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 69  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 128

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 129 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 187

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 188 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVASL-TKAQRTKIESDL 246

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 247 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLRFVCEEMN 288


>gi|73662613|ref|YP_301394.1| 5'-3' exonuclease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495128|dbj|BAE18449.1| putative 5'-3' exonuclease [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 293

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 155/301 (51%), Gaps = 16/301 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  + L+DG + ++R F+AT L     R   G+P N + GF   ++  +   +    
Sbjct: 1   MTKK--ILLIDGMALLFRHFFATSLHKQFMRNSSGIPTNGVQGFVRHVFTAINEIQ---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH AV +D    TFRN+++  YK NRP  PE L+PQ   V+  +  FG   I +Q +EA
Sbjct: 55  PSHVAVCWDMGKSTFRNDMFDGYKQNRPAPPEELIPQFDYVKEVSNQFGFVNIGVQNYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I T       +   V +++ DKD++Q ++P   ++ T K      +  ++    ++G
Sbjct: 115 DDVIGTLAQQYSDQN-QVYVVTGDKDILQCINPNVEIWLTKKGFNIYNRYTLDRFQSEYG 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P +++ ++A  GD+ D  PG+ GIG KTA  L+Q +G++E++L    ++    +R  I
Sbjct: 174 LNPLQLIDVKAFMGDTADGYPGVKGIGEKTAIKLIQNHGSVESVLNALDQLTPG-QRTKI 232

Query: 234 LEYAETARLSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
               +  +LS+ L  + T VP+ T+ L   +       ++++  K  E       ++T +
Sbjct: 233 EANIDNLKLSKTLAEIHTKVPLNTVDLLDKMQFGTELTKILNICKEHELYVSGKYLSTHF 292

Query: 293 D 293
            
Sbjct: 293 S 293


>gi|229172320|ref|ZP_04299881.1| 5'-3' exonuclease [Bacillus cereus MM3]
 gi|228611155|gb|EEK68416.1| 5'-3' exonuclease [Bacillus cereus MM3]
          Length = 299

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 13  KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 68

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 69  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 128

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 129 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 187

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 188 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVATL-TKAQRTKIESDL 246

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   N  +L    + + 
Sbjct: 247 ENLNISLQLAQIHCEVPISCSLEE-GLHTMNEEKLRFVCEEMN 288


>gi|325914281|ref|ZP_08176631.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325539536|gb|EGD11182.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 328

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 142/308 (46%), Gaps = 11/308 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L+L+D S +++RA+++ P   +   G P NA+ GF   L  LL+  R +    H  
Sbjct: 17  RPEPLYLIDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLERERPQ----HIT 72

Query: 63  VIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           + FD      FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I
Sbjct: 73  IAFDEALDSCFRHAIYPAYKGNREPAPDALRRQFAHCKALCAALGLSVLAHREYEADDLI 132

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            +  +     G    I+S DKDL QL+      +D  +  +  ++ V  + G+   ++  
Sbjct: 133 GSALHSMRAHGMRGVIVSADKDLSQLLFDHDEQWDYARNLRWGMDGVKARHGVHAHQIAD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILE 235
             AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + E
Sbjct: 193 YLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLRE 252

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             + A L R+L  +  D P+ +          +   LI    +L F  L  R        
Sbjct: 253 QRDHALLWRQLTTIALDAPLGLTDAGFTRAQADADMLIGLCDSLRFGPLTRRRLLAVCDG 312

Query: 296 AANIEPVV 303
           AA   P  
Sbjct: 313 AALPPPPA 320


>gi|229029362|ref|ZP_04185448.1| 5'-3' exonuclease [Bacillus cereus AH1271]
 gi|228731956|gb|EEL82852.1| 5'-3' exonuclease [Bacillus cereus AH1271]
          Length = 288

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVKPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N S +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVSSL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLRFVCEEMN 277


>gi|66817246|ref|XP_642487.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
 gi|60470570|gb|EAL68549.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
          Length = 516

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 123/486 (25%), Positives = 225/486 (46%), Gaps = 77/486 (15%)

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-GE 619
              + L ++  ++  ++ + + ME  GI  ++ + +    ++   +  LE     L  G+
Sbjct: 13  AENQSLFIFSEIEMKILPIFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVLLPGK 72

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT------------------TAQDLEQIN 661
            F+LSS + +  +LF  LK P     K  Q                     T   + +  
Sbjct: 73  VFSLSSTEDISQLLFQDLKIPVPEIAKANQQYNGNKGGGGCGGGVRRQNYSTKGAVLEHI 132

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHI----NKRTQRVHTFYSLASTMTGRLASLE 717
              +P+   I+E R+L+   + Y D L  +         +R+++        TGR++   
Sbjct: 133 SHHHPLPGLIIEIRKLTHHITHYVDILGKYEYHSDRFNMRRIYSTIQQTVVPTGRISMAF 192

Query: 718 PNLQNIPIKTDLGQ---------------------------------------------- 731
           PNLQNI    +                                                 
Sbjct: 193 PNLQNISHPIEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNLLEIESRCSFTKV 252

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE--NSLDIHRMVAAEIFGVN 789
            +R +F       L+SADYSQ+ELRIL H +K   L ++F     LD+ + +A ++ GV+
Sbjct: 253 SLRNSFTCANGYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELDVFKCIAHQLSGVD 312

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
            EKVS + R  AK + + I+YG+    +A++L++ + +A   ++R+ + +  + +++E  
Sbjct: 313 YEKVSDEERNFAKHLVYGILYGMGINSIASELKVDKEKAKVQLERFKNTYRTLIDFLESI 372

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE--RAAINAPIQGSAADITRRAMISV 907
           ++ V  + Y++T+FGR  ++  I+ PK+  ++I +  R A N+  QG+AADIT+ AMI++
Sbjct: 373 EDRVFIDAYIKTLFGRIRNFSAIHDPKTLPKDIGKIKRGARNSVPQGTAADITKLAMINI 432

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
               +   +   M+LQ+HDEL+FEVP  +I  +++II  SME      + L VPL + + 
Sbjct: 433 QSQFDQLSINVHMVLQLHDELLFEVPLTDIDQSAKIIKESMENV----VKLNVPLPIKMS 488

Query: 968 VSNNWQ 973
           +  NW 
Sbjct: 489 IGTNWG 494


>gi|289435227|ref|YP_003465099.1| 5-3 exonuclease family protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171471|emb|CBH28015.1| 5-3 exonuclease family protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313632694|gb|EFR99668.1| 5'-3' exonuclease [Listeria seeligeri FSL N1-067]
 gi|313637244|gb|EFS02752.1| 5'-3' exonuclease [Listeria seeligeri FSL S4-171]
          Length = 290

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 154/295 (52%), Gaps = 14/295 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++    +S  
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGVQGFMRHMFAAIR----QSNP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVATGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     + T++S DKDL+QL++PT  ++   K     ++ +     ++ GI
Sbjct: 119 DCIGTITVQAAS-SISTTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYNEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ D  PG+ GIG KTA  L+QEY ++E +L N  ++K   ++  I 
Sbjct: 178 TPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEYQSIEGVLANLDKLKPA-QQTKIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           E      LS+KL  + T+VP+ + L+ L           S ++      L   V 
Sbjct: 237 EDLAMLELSQKLAKIHTEVPLEMNLDSLKYNGFQEDA-YSVIEKYGLKTLTRDVE 290


>gi|21230313|ref|NP_636230.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769693|ref|YP_244455.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21111863|gb|AAM40154.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575025|gb|AAY50435.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 332

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 140/305 (45%), Gaps = 11/305 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+  R +    H  + F
Sbjct: 24  PLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLERERPQ----HITIAF 79

Query: 66  D-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D      FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I + 
Sbjct: 80  DEALDSCFRHAIYPAYKGNREPAPDALRRQFAHCKALCAALGLSVLAHREYEADDLIGSA 139

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            + A   G    I+S DKDL QL+      +D  +  +  ++ V  + G+   +M    A
Sbjct: 140 LHSARARGLRGIIVSADKDLSQLLFEHDEQWDYARNVRWGMDGVKARHGVHAHQMADYLA 199

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEYAE 238
           L GD+IDNIPGI GIG K+AA+LL  +G+L+ +L     +   + R        + E  E
Sbjct: 200 LCGDAIDNIPGITGIGAKSAAVLLAHFGSLDALLERLDELPFLRLRGAAQMALRLREQRE 259

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A L R+L  +  D P+ +          +   L     +L F  L  R        A  
Sbjct: 260 HALLWRQLTTIALDAPLELTESGFTRAPADTDMLTGLCDSLRFGPLTRRRLLAASGGAVL 319

Query: 299 IEPVV 303
             P  
Sbjct: 320 PPPPA 324


>gi|228907315|ref|ZP_04071174.1| 5'-3' exonuclease [Bacillus thuringiensis IBL 200]
 gi|228852369|gb|EEM97164.1| 5'-3' exonuclease [Bacillus thuringiensis IBL 200]
          Length = 288

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ GI P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGIEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +G +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDGEKLRFVCEEMN 277


>gi|229109135|ref|ZP_04238735.1| 5'-3' exonuclease [Bacillus cereus Rock1-15]
 gi|229144283|ref|ZP_04272697.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST24]
 gi|296502252|ref|YP_003663952.1| 5'-3' exonuclease [Bacillus thuringiensis BMB171]
 gi|228639291|gb|EEK95707.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST24]
 gi|228674413|gb|EEL29657.1| 5'-3' exonuclease [Bacillus cereus Rock1-15]
 gi|296323304|gb|ADH06232.1| 5'-3' exonuclease [Bacillus thuringiensis BMB171]
          Length = 288

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLRFVCEEMN 277


>gi|218233992|ref|YP_002366363.1| 5'-3' exonuclease family protein [Bacillus cereus B4264]
 gi|229149881|ref|ZP_04278109.1| 5'-3' exonuclease [Bacillus cereus m1550]
 gi|218161949|gb|ACK61941.1| 5'-3' exonuclease family protein [Bacillus cereus B4264]
 gi|228633562|gb|EEK90163.1| 5'-3' exonuclease [Bacillus cereus m1550]
          Length = 288

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAEIHCEVPISCSLEE-GLHTMDEEKLRFVCEEMN 277


>gi|188992907|ref|YP_001904917.1| Exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734667|emb|CAP52877.1| Exodeoxyribonuclease IX [Xanthomonas campestris pv. campestris]
          Length = 332

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 140/305 (45%), Gaps = 11/305 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+  R +    H  + F
Sbjct: 24  PLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLERERPQ----HITIAF 79

Query: 66  D-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D      FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I + 
Sbjct: 80  DEALDSCFRHAIYPAYKGNREPAPDALRRQFAHCKALCAALGLSVLAHREYEADDLIGSA 139

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            + A   G    I+S DKDL QL+      +D  +  +  ++ V  + G+   +M    A
Sbjct: 140 LHSARARGLRGIIVSADKDLSQLLFEHDEQWDYARNVRWGMDGVKARHGVHAHQMADYLA 199

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEYAE 238
           L GD+IDNIPGI GIG K+AA+LL  +G+L+ +L     +   + R        + E  E
Sbjct: 200 LCGDAIDNIPGITGIGAKSAAVLLAHFGSLDALLERLDELPFLRLRGAAQMALRLREQRE 259

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A L R+L  +  D P+ +          +   L     +L F  L  R        A  
Sbjct: 260 HALLWRQLTTIALDAPLELTESGFTRAPADTDMLTGLCDSLRFGPLTRRRLLAASGGAVL 319

Query: 299 IEPVV 303
             P  
Sbjct: 320 PPPPA 324


>gi|229155248|ref|ZP_04283359.1| 5'-3' exonuclease [Bacillus cereus ATCC 4342]
 gi|228628173|gb|EEK84889.1| 5'-3' exonuclease [Bacillus cereus ATCC 4342]
          Length = 301

 Score =  268 bits (685), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG+P N I G+   L   +Q        +H 
Sbjct: 15  KKVLLVDGMALLFRAFYATSVYGQFMKRQDGIPTNGIHGYMKHLLTAMQAIE----PTHI 70

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 71  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 130

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 131 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 190 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 248

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 249 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKLRFVCEEMN 290


>gi|229016937|ref|ZP_04173862.1| 5'-3' exonuclease [Bacillus cereus AH1273]
 gi|229023144|ref|ZP_04179656.1| 5'-3' exonuclease [Bacillus cereus AH1272]
 gi|228738179|gb|EEL88663.1| 5'-3' exonuclease [Bacillus cereus AH1272]
 gi|228744356|gb|EEL94433.1| 5'-3' exonuclease [Bacillus cereus AH1273]
          Length = 288

 Score =  268 bits (685), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLRFVCEEMN 277


>gi|228900261|ref|ZP_04064492.1| 5'-3' exonuclease [Bacillus thuringiensis IBL 4222]
 gi|228964661|ref|ZP_04125768.1| 5'-3' exonuclease [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794911|gb|EEM42410.1| 5'-3' exonuclease [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228859430|gb|EEN03859.1| 5'-3' exonuclease [Bacillus thuringiensis IBL 4222]
          Length = 288

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLKFVCEEMN 277


>gi|118477127|ref|YP_894278.1| 5'-3' exonuclease [Bacillus thuringiensis str. Al Hakam]
 gi|228926711|ref|ZP_04089779.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228932971|ref|ZP_04095834.1| 5'-3' exonuclease [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229183877|ref|ZP_04311093.1| 5'-3' exonuclease [Bacillus cereus BGSC 6E1]
 gi|118416352|gb|ABK84771.1| 5'-3' exonuclease [Bacillus thuringiensis str. Al Hakam]
 gi|228599529|gb|EEK57133.1| 5'-3' exonuclease [Bacillus cereus BGSC 6E1]
 gi|228826572|gb|EEM72343.1| 5'-3' exonuclease [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228832824|gb|EEM78393.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 301

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 15  KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 70

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 71  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 130

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 131 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPW 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 190 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 248

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 249 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKLRFVCEEMN 290


>gi|194246473|ref|YP_002004112.1| DNA polymerase I [Candidatus Phytoplasma mali]
 gi|193806830|emb|CAP18259.1| DNA polymerase I [Candidatus Phytoplasma mali]
          Length = 295

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 98/294 (33%), Positives = 157/294 (53%), Gaps = 14/294 (4%)

Query: 5   NHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            +L LVDG++ ++R +YAT      + +   G+  NA+ GF N+L K++  S+      +
Sbjct: 2   KNLVLVDGNALMFRVYYATINANNYIMKNRKGVYTNALLGFINILEKIIAKSK-----DY 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD   +T R+ IY DYK  RP  P  L+ Q+PL++   +  GI   E  G+EADDI
Sbjct: 57  IFIAFDAHHLTKRHAIYADYKKGRPPTPLTLISQIPLIKQYLELSGIKHYEQIGYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T    A K+   V I S+DKDL+QLV     +    K     E  +   ++ K+G+  
Sbjct: 117 IGTLAKKASKKNIKVEIFSSDKDLLQLVDENITVCLMKKGISQVEYYNPTSLLSKYGLNE 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +M+  +++ GDS DNI G+ GIG KTA  LLQ++ NLENI  + + IK    ++ ++ +
Sbjct: 177 CQMIDFKSMVGDSSDNIKGVLGIGPKTATKLLQKFSNLENIFSSLNIIKPS-IKDKLILF 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            E    +R L+ +   VP+   L    ++D +   LI+F K +    LI ++  
Sbjct: 236 KEKVFFNRLLLTIDLSVPLPFGLLDTKIKDVDLKELIAFYKEMNLEILIFKLQK 289


>gi|325929428|ref|ZP_08190556.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas perforans 91-118]
 gi|325540203|gb|EGD11817.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas perforans 91-118]
          Length = 328

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 145/309 (46%), Gaps = 11/309 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           ++   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    +    H 
Sbjct: 16  RRPTPLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPQ----HI 71

Query: 62  AVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            + FD      FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+
Sbjct: 72  TIAFDEALDSCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +  + A   G    I+S DKDL QL+      +D  + ++  I+ V  + G+   ++ 
Sbjct: 132 IGSALHSARAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGIDGVKARHGVHAHQIA 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------IL 234
              AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + 
Sbjct: 192 DYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLR 251

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  E A L R+L  +  D P+ +          +   L    ++L F  L  R       
Sbjct: 252 EQREHALLWRQLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGPLTRRRLLAAST 311

Query: 295 DAANIEPVV 303
            AA   P V
Sbjct: 312 GAAAPFPPV 320


>gi|74002862|ref|XP_545125.2| PREDICTED: similar to DNA polymerase theta (DNA polymerase eta)
           [Canis familiaris]
          Length = 576

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 131/557 (23%), Positives = 221/557 (39%), Gaps = 135/557 (24%)

Query: 465 IGHN-IKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           I H+ I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    +L+
Sbjct: 19  ISHDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSKEPTLHSIVSSFLPHELL-LLE 77

Query: 523 SRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
             ++   I  +  +   EH     A   S +       L   L  E L  V+ +++ P  
Sbjct: 78  GIETGQGIQSLGLNVNTEHSGRYRASVESILAFNAMNQLNSLLKKENLQDVFCKVEMPSQ 137

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
             ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + + +  KL
Sbjct: 138 YCLALLELNGIGFSTTECESQKHIMQAKLDAIEIQAYQLAGHSFSFTSSDDIAEDVLNKL 197

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP--NHINK- 694
           K                          +P+   ILEWR+++   +     L     +N  
Sbjct: 198 K------------------------ALHPLPGLILEWRRITNAITKVVFPLQREKRLNPF 233

Query: 695 -RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI-------------------- 733
              +R++   S + T TGR+  +EPN+QN+P   ++   I                    
Sbjct: 234 LGMERIYPV-SQSHTATGRITFMEPNIQNVPRDFEIKMPILVGESPPSQALAKGLLPVYG 292

Query: 734 ---------------------------------RRAFISPPTKKLISADYSQIELRILAH 760
                                            R AF+      +++ADYSQ+ELRILAH
Sbjct: 293 RGRGKRSCGPNSGHQAQVEERASDQGMPFSVSMRHAFVPFSGGLILAADYSQLELRILAH 352

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
           ++    L QV     D+ R +AAE   +  E V   +R+ AK I + IIYG+    L  Q
Sbjct: 353 LSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQ 412

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           + I  ++AA YI+ +  R+ GI+ ++ +T    ++NG+V+TI GRR +   IN      +
Sbjct: 413 MGIKENDAACYIESFKSRYTGINHFMRETVKNCKRNGFVQTILGRRRYLPGINDNNPYHK 472

Query: 881 NI---------------------------------------------NERAAINAPIQGS 895
                                                           ER AIN  +QGS
Sbjct: 473 AHGKHSHGQYINDCDCIPIRPYLQKQELSQIWPEGLPTSGPTVPSLNAERQAINTTVQGS 532

Query: 896 AADITRRAMISVHKSLE 912
           AADI + A +++ K LE
Sbjct: 533 AADIVKIATVNIQKQLE 549


>gi|28572629|ref|NP_789409.1| DNA polymerase I [Tropheryma whipplei TW08/27]
 gi|28410761|emb|CAD67147.1| DNA polymerase I [Tropheryma whipplei TW08/27]
          Length = 356

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 107/293 (36%), Positives = 157/293 (53%), Gaps = 13/293 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDG S  +R+FY T  ++   +G+ VNA+ GF N L +LL++       SHFA
Sbjct: 7   QSKRLILVDGHSLAFRSFYGTKAIAV-VNGVQVNALYGFVNRLTQLLES----GPVSHFA 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    +FR E YP+YK  R K+PE   PQ+ L++      G+    +Q +EADDIIA
Sbjct: 62  VAFDVSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEFLHLIGVNHFAVQNYEADDIIA 121

Query: 123 TYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPP 176
           T + +A +EGF  V I+S D+DL+QLV+    L     + +        E V+ ++GI P
Sbjct: 122 TLSRLALEEGFSDVRILSGDRDLIQLVNNKVSLLFFSAKHRLGFAVYTPEAVMDRYGIEP 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
                + AL G+S DN+PGI  IG KTA  LLQ+YG L+ I+ +   I      +NI   
Sbjct: 182 HVYPDMAALVGESSDNLPGIKKIGEKTATTLLQKYGCLQKIIESRWEISG-VVGQNIRND 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRV 288
              A  +RKL  L  D+P+   +  L L  + +  +L  FL+      +  R+
Sbjct: 241 YHVALRNRKLNTLVNDLPLPASVSDLSLSGEIDTKKLEGFLRRYRMNSITPRL 293


>gi|28493259|ref|NP_787420.1| DNA polymerase I [Tropheryma whipplei str. Twist]
 gi|28476300|gb|AAO44389.1| DNA polymerase I [Tropheryma whipplei str. Twist]
          Length = 356

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 107/293 (36%), Positives = 157/293 (53%), Gaps = 13/293 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L LVDG S  +R+FY T  ++   +G+ VNA+ GF N L +LL++       SHFA
Sbjct: 7   QSKRLILVDGHSLAFRSFYGTKAIAV-VNGVQVNALYGFVNRLTQLLES----GPVSHFA 61

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    +FR E YP+YK  R K+PE   PQ+ L++      G+    +Q +EADDIIA
Sbjct: 62  VAFDVSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEFLHLIGVNHFAVQNYEADDIIA 121

Query: 123 TYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPP 176
           T + +A +EGF  V I+S D+DL+QLV+    L     + +        E V+ ++GI P
Sbjct: 122 TLSRLALEEGFSDVRILSGDRDLIQLVNNKVSLLFFSAKHRLGFAVYTPEAVMDRYGIEP 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
                + AL G+S DN+PGI  IG KTA  LLQ+YG L+ I+ +   I      +NI   
Sbjct: 182 HVYPDMAALVGESSDNLPGIKKIGEKTATTLLQKYGCLQKIIESRWEISG-VVGQNIRND 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRV 288
              A  +RKL  L  D+P+   +  L L  + +  +L  FL+      +  R+
Sbjct: 241 YHVALRNRKLNTLVNDLPLPASVSDLSLSGEIDTKKLEGFLRRYRMNSITPRL 293


>gi|229090645|ref|ZP_04221878.1| 5'-3' exonuclease [Bacillus cereus Rock3-42]
 gi|228692587|gb|EEL46313.1| 5'-3' exonuclease [Bacillus cereus Rock3-42]
          Length = 301

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 15  KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 70

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 71  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 130

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 131 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 190 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 248

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  +E   L   +  +L    + + 
Sbjct: 249 ENLNISLQLAQIHCEVPISCSIEE-GLHTIDEEKLRFVCEEMN 290


>gi|52143770|ref|YP_083058.1| 5'-3' exonuclease [Bacillus cereus E33L]
 gi|51977239|gb|AAU18789.1| 5'-3' exonuclease [Bacillus cereus E33L]
          Length = 288

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKLRFVCEEMN 277


>gi|47566046|ref|ZP_00237084.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47556963|gb|EAL15293.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 288

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG+P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGIPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKLRFVCEEMN 277


>gi|228920391|ref|ZP_04083737.1| 5'-3' exonuclease [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228839313|gb|EEM84608.1| 5'-3' exonuclease [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 288

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  ++    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDAEKIRFVCEEMN 277


>gi|228914256|ref|ZP_04077872.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228945280|ref|ZP_04107636.1| 5'-3' exonuclease [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228814515|gb|EEM60780.1| 5'-3' exonuclease [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228845460|gb|EEM90495.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 301

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 15  KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 70

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 71  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 130

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 131 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 190 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 248

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  +E   L   +  +L    + + 
Sbjct: 249 ENLNISLQLAQIHCEVPISCSIEE-GLHTIDEEKLRFVCEEMN 290


>gi|289550777|ref|YP_003471681.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|315658273|ref|ZP_07911145.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
 gi|289180309|gb|ADC87554.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|315496602|gb|EFU84925.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
          Length = 293

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 151/287 (52%), Gaps = 15/287 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L ++      G+P N + GF   ++  + +       SH 
Sbjct: 3   NRVLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGVQGFVRHIFSAIHDI----APSHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN++Y  YK NRP  P  L+PQ   V+     FG   I +  +EADD+I
Sbjct: 59  AVCWDMGQETFRNQMYASYKQNRPAPPNELIPQFDYVKEIATQFGFVNIGVVNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            +       +   V II+ DKD++Q ++P   ++ T K      +  +E  ++ +GI P+
Sbjct: 119 GSLAQTYSDQN-EVFIITGDKDILQCINPNVEVWLTKKGFNIYNRYTLERFLEDYGITPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + ++A  GD+ D  PG+ GIG KTA  L++E+ ++E +L N S++ Q  ++  I  + 
Sbjct: 178 QFIDVKAFMGDTADGYPGVKGIGEKTALKLIKEHQSVEGVLSNISKLTQG-QQTKINSHI 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           +  +LS++L  + T+VP+    E L  +      L + L      +L
Sbjct: 237 DDLKLSKQLAEIYTNVPLDT--ESLFDKMTYANTLQNILSICNEHEL 281


>gi|229195883|ref|ZP_04322642.1| 5'-3' exonuclease [Bacillus cereus m1293]
 gi|228587656|gb|EEK45715.1| 5'-3' exonuclease [Bacillus cereus m1293]
          Length = 288

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKLRFVCEEMN 277


>gi|228984760|ref|ZP_04144932.1| 5'-3' exonuclease [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228774958|gb|EEM23352.1| 5'-3' exonuclease [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 288

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 144/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG+P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGIPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L+   + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKLLFVCEEMN 277


>gi|228952059|ref|ZP_04114154.1| 5'-3' exonuclease [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229069232|ref|ZP_04202523.1| 5'-3' exonuclease [Bacillus cereus F65185]
 gi|228713984|gb|EEL65868.1| 5'-3' exonuclease [Bacillus cereus F65185]
 gi|228807591|gb|EEM54115.1| 5'-3' exonuclease [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 288

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV  +  +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKSVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLRFVCEEMN 277


>gi|229121222|ref|ZP_04250459.1| 5'-3' exonuclease [Bacillus cereus 95/8201]
 gi|228662341|gb|EEL17944.1| 5'-3' exonuclease [Bacillus cereus 95/8201]
          Length = 301

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 15  KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 70

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 71  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 130

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 131 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPW 189

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 190 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 248

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  +E   L   +  +L    + + 
Sbjct: 249 ENLNISLQLAQIHCEVPISCSIEE-GLHTIDEEKLRFVCEEMN 290


>gi|30261677|ref|NP_844054.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Ames]
 gi|47526880|ref|YP_018229.1| 5'-3' exonuclease family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184506|ref|YP_027758.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Sterne]
 gi|49480970|ref|YP_035796.1| 5'-3' exonuclease [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65318945|ref|ZP_00391904.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI)
           [Bacillus anthracis str. A2012]
 gi|165869566|ref|ZP_02214225.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0488]
 gi|167633236|ref|ZP_02391561.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0442]
 gi|167639181|ref|ZP_02397454.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0193]
 gi|170686123|ref|ZP_02877345.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0465]
 gi|170706428|ref|ZP_02896888.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0389]
 gi|177650319|ref|ZP_02933286.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0174]
 gi|196046646|ref|ZP_03113870.1| 5'-3' exonuclease family protein [Bacillus cereus 03BB108]
 gi|225863545|ref|YP_002748923.1| 5'-3' exonuclease family protein [Bacillus cereus 03BB102]
 gi|227815571|ref|YP_002815580.1| 5'-3' exonuclease family protein [Bacillus anthracis str. CDC 684]
 gi|229601865|ref|YP_002866083.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0248]
 gi|254683168|ref|ZP_05147029.1| 5'-3' exonuclease family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723756|ref|ZP_05185542.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A1055]
 gi|254734516|ref|ZP_05192228.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740929|ref|ZP_05198617.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Kruger B]
 gi|254755167|ref|ZP_05207201.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Vollum]
 gi|254759704|ref|ZP_05211728.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Australia
           94]
 gi|301053216|ref|YP_003791427.1| 5'-3' exonuclease [Bacillus anthracis CI]
 gi|30255905|gb|AAP25540.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Ames]
 gi|47502028|gb|AAT30704.1| 5'-3' exonuclease family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178433|gb|AAT53809.1| 5'-3' exonuclease family protein [Bacillus anthracis str. Sterne]
 gi|49332526|gb|AAT63172.1| 5'-3' exonuclease [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|164715006|gb|EDR20524.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0488]
 gi|167512971|gb|EDR88344.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0193]
 gi|167531274|gb|EDR93952.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0442]
 gi|170128526|gb|EDS97393.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0389]
 gi|170669820|gb|EDT20561.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0465]
 gi|172083463|gb|EDT68523.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0174]
 gi|196022579|gb|EDX61262.1| 5'-3' exonuclease family protein [Bacillus cereus 03BB108]
 gi|225786956|gb|ACO27173.1| 5'-3' exonuclease family protein [Bacillus cereus 03BB102]
 gi|227004358|gb|ACP14101.1| 5'-3' exonuclease family protein [Bacillus anthracis str. CDC 684]
 gi|229266273|gb|ACQ47910.1| 5'-3' exonuclease family protein [Bacillus anthracis str. A0248]
 gi|300375385|gb|ADK04289.1| 5'-3' exonuclease [Bacillus cereus biovar anthracis str. CI]
          Length = 288

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKLRFVCEEMN 277


>gi|30019729|ref|NP_831360.1| 5'-3' exonuclease [Bacillus cereus ATCC 14579]
 gi|229043427|ref|ZP_04191143.1| 5'-3' exonuclease [Bacillus cereus AH676]
 gi|229126994|ref|ZP_04256002.1| 5'-3' exonuclease [Bacillus cereus BDRD-Cer4]
 gi|29895274|gb|AAP08561.1| 5'-3' exonuclease [Bacillus cereus ATCC 14579]
 gi|228656475|gb|EEL12305.1| 5'-3' exonuclease [Bacillus cereus BDRD-Cer4]
 gi|228725935|gb|EEL77176.1| 5'-3' exonuclease [Bacillus cereus AH676]
          Length = 288

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPERIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLEE-GLHTMDEEKLRFVCEEMN 277


>gi|224476563|ref|YP_002634169.1| putative 5'-3' exonuclease [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421170|emb|CAL27984.1| putative 5'-3' exonuclease [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 295

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 148/261 (56%), Gaps = 13/261 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT       R  +G P N + GF   ++  +++       +H 
Sbjct: 3   NRVLLVDGMALLFRHFYATSIHNQYMRNREGTPTNGVQGFIRHIFSAIEDIN----PTHI 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRNE++  YK +RP  P+ L PQ  LV+  ++A G   I +Q +EADD+I
Sbjct: 59  AVCWDMGQQTFRNEVFTAYKQHRPAPPDELKPQFDLVKQMSEALGFINIGVQNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T +    KE   + I++ DKD++Q ++P   ++ T K      + D+E    ++ + P 
Sbjct: 119 GTLSNNLSKEN-KIYIVTGDKDILQCINPNVQVWLTKKGFNIYNRYDLERYQAEYNLNPL 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GDS D  PG+ GIG KTA  L+Q+Y ++EN++ +   +    +++ I+ + 
Sbjct: 178 QLIDIKAFMGDSADGYPGVKGIGEKTALKLIQQYQSVENVINHIDELTPG-QQKKIISHM 236

Query: 238 ETARLSRKLVMLRTDVPITIP 258
           +  +LS++L  + T+VP+ I 
Sbjct: 237 DDLKLSKQLAAIHTEVPLDIE 257


>gi|218896611|ref|YP_002445022.1| 5'-3' exonuclease family protein [Bacillus cereus G9842]
 gi|218545954|gb|ACK98348.1| 5'-3' exonuclease family protein [Bacillus cereus G9842]
          Length = 288

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCALEE-GLHTMDEEKLKFVCEEMN 277


>gi|190568603|ref|ZP_03021508.1| 5'-3' exonuclease family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|190560203|gb|EDV14183.1| 5'-3' exonuclease family protein [Bacillus anthracis
           Tsiankovskii-I]
          Length = 288

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +R +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIRCEVPISCSLEE-GLHTIDEEKLRFVCEEMN 277


>gi|229189761|ref|ZP_04316775.1| 5'-3' exonuclease [Bacillus cereus ATCC 10876]
 gi|228593810|gb|EEK51615.1| 5'-3' exonuclease [Bacillus cereus ATCC 10876]
          Length = 288

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV  +  +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKSVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVGSL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLRFVCEEMN 277


>gi|261327618|emb|CBH10594.1| mitochondrial DNA polymerase I protein A,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 958

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 142/653 (21%), Positives = 249/653 (38%), Gaps = 119/653 (18%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           ++   +  KDD       + ++L V  +++  G   +T      L          K G  
Sbjct: 314 VSFLVVRWKDDVIVYSAAVGLELLVRVAEELPGVEIVTFNAPCLLLPLL----SYKQG-- 367

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
            K+                D+ LM+++L+    + + A   +   SY ++  L +     
Sbjct: 368 -KFFTS----------CVSDVRLMTWMLEPSADTAEFADYDKLLQSYQQQIGLPAG---- 412

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++       +E        +  L+ +L  +L    LL  + + +K +  + + M++ G 
Sbjct: 413 -LNAAECKGSKEAVSHRVFYMEPLYRMLYGRLGSHGLLPAFLKQEKRISIMCAAMKLNGF 471

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDL--SGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
            ++   +    A  ++ +  L      +  S   FN+ S       L+  LK      +K
Sbjct: 472 YVNLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSK 531

Query: 647 --------------TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
                          G   +T+++  +I    +   + ++ +R+L+K+  TY        
Sbjct: 532 GTEGSTENNSLILTRGGKLSTSEETLRILARHHEFPRILIAYRKLAKLLQTYVVGFMEMA 591

Query: 693 NK------------------------------RTQRVHTFYSLASTMTGRLASLEPNLQN 722
                                           +  ++H       T TGRL S+EPN+Q 
Sbjct: 592 IPIEEGDGEFTDFSITEQGKEAIPNASDRHKAKWAKLHPNLVQEGTETGRLTSVEPNMQA 651

Query: 723 IP--------------------------------------------IKTDLGQKIRRAFI 738
           +P                                            ++      IRR   
Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNYENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           +P    L+S DY Q+ELR+LAH++  + L  V   S DIHR +A  IF      V+ + R
Sbjct: 712 APDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIFRKTS--VTGEER 769

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
             AK + F I+YG  P  LA Q+ +   +A      +   FP +  Y  +  +  R +G 
Sbjct: 770 SLAKKVVFGILYGAGPRGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRSDGS 829

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLA 917
           V T+ GR     +IN    + R+  ER A N  +QGSAAD+ +  MI+V +  L+ H   
Sbjct: 830 VRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIAVEREVLQPHAPD 889

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
            ++LLQ+HDE++  VP   +     I+  +M  A    I+L VPL V  KV  
Sbjct: 890 VRLLLQVHDEIILSVPNHMLH---SIVPAAM-HAFAHPISLLVPLLVTTKVGR 938


>gi|72388042|ref|XP_844445.1| mitochondrial DNA polymerase I protein A [Trypanosoma brucei
           TREU927]
 gi|62359390|gb|AAX79828.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei]
 gi|70800978|gb|AAZ10886.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei brucei strain 927/4 GUTat10.1]
          Length = 958

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 142/653 (21%), Positives = 249/653 (38%), Gaps = 119/653 (18%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           ++   +  KDD       + ++L V  +++  G   +T      L          K G  
Sbjct: 314 VSFLVVRWKDDVIVYSAAVGLELLVRVAEELPGVEIVTFNAPCLLLPLL----SYKQG-- 367

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
            K+                D+ LM+++L+    + + A   +   SY ++  L +     
Sbjct: 368 -KFFTS----------CVSDVRLMTWMLEPSADTAEFADYDKLLQSYQQQIGLPAG---- 412

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++       +E        +  L+ +L  +L    LL  + + +K +  + + M++ G 
Sbjct: 413 -LNAAECKGSKEAVSHRVFYMEPLYRMLYGRLGSHGLLPAFLKQEKRISIMCAAMKLNGF 471

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDL--SGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
            ++   +    A  ++ +  L      +  S   FN+ S       L+  LK      +K
Sbjct: 472 YVNLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSK 531

Query: 647 --------------TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
                          G   +T+++  +I    +   + ++ +R+L+K+  TY        
Sbjct: 532 GTEGSTENNSLILTRGGKLSTSEETLRILARHHEFPRILIAYRKLAKLLQTYVVGFMEMA 591

Query: 693 NK------------------------------RTQRVHTFYSLASTMTGRLASLEPNLQN 722
                                           +  ++H       T TGRL S+EPN+Q 
Sbjct: 592 IPIEEGDGEFTDFSISEQGKEAIPNASDRHKAKWAKLHPNLVQEGTETGRLTSVEPNMQA 651

Query: 723 IP--------------------------------------------IKTDLGQKIRRAFI 738
           +P                                            ++      IRR   
Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           +P    L+S DY Q+ELR+LAH++  + L  V   S DIHR +A  IF      V+ + R
Sbjct: 712 APDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIFRKTS--VTGEER 769

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
             AK + F I+YG  P  LA Q+ +   +A      +   FP +  Y  +  +  R +G 
Sbjct: 770 SLAKKVVFGILYGAGPRGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRSDGS 829

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLA 917
           V T+ GR     +IN    + R+  ER A N  +QGSAAD+ +  MI+V +  L+ H   
Sbjct: 830 VRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIAVEREVLQPHAPD 889

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
            ++LLQ+HDE++  VP   +     I+  +M  A    I+L VPL V  KV  
Sbjct: 890 VRLLLQVHDEIILSVPNHMLH---SIVPAAM-HAFAHPISLLVPLLVTTKVGR 938


>gi|206970789|ref|ZP_03231741.1| 5'-3' exonuclease family protein [Bacillus cereus AH1134]
 gi|228957956|ref|ZP_04119694.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229178087|ref|ZP_04305459.1| 5'-3' exonuclease [Bacillus cereus 172560W]
 gi|206734425|gb|EDZ51595.1| 5'-3' exonuclease family protein [Bacillus cereus AH1134]
 gi|228605575|gb|EEK63024.1| 5'-3' exonuclease [Bacillus cereus 172560W]
 gi|228801723|gb|EEM48602.1| 5'-3' exonuclease [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 288

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLEE-GLHTMDEEKLRFVCEEMN 277


>gi|229102285|ref|ZP_04232994.1| 5'-3' exonuclease [Bacillus cereus Rock3-28]
 gi|228681186|gb|EEL35354.1| 5'-3' exonuclease [Bacillus cereus Rock3-28]
          Length = 300

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 14  KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 69

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 70  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCI 129

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V +++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 130 GTLAKQYCNE-AEVYVLTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 188

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 189 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASL-TKAQRTKIESDL 247

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L      + 
Sbjct: 248 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLRFVCNEMN 289


>gi|229058317|ref|ZP_04196702.1| 5'-3' exonuclease [Bacillus cereus AH603]
 gi|228719991|gb|EEL71580.1| 5'-3' exonuclease [Bacillus cereus AH603]
          Length = 288

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L      + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLRFVCNEMN 277


>gi|196039078|ref|ZP_03106385.1| 5'-3' exonuclease family protein [Bacillus cereus NVH0597-99]
 gi|300117391|ref|ZP_07055181.1| 5'-3' exonuclease [Bacillus cereus SJ1]
 gi|196030223|gb|EDX68823.1| 5'-3' exonuclease family protein [Bacillus cereus NVH0597-99]
 gi|298725226|gb|EFI65878.1| 5'-3' exonuclease [Bacillus cereus SJ1]
          Length = 288

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  +E   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSIEE-GLHTIDEEKLRFVCEEMN 277


>gi|42780781|ref|NP_978028.1| 5'-3' exonuclease [Bacillus cereus ATCC 10987]
 gi|42736701|gb|AAS40636.1| 5'-3' exonuclease family protein [Bacillus cereus ATCC 10987]
          Length = 288

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 141/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGLKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E      ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPGKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSTVLENITSL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKLRFVCEEMN 277


>gi|324325697|gb|ADY20957.1| 5'-3' exonuclease [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 288

 Score =  266 bits (680), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVAAL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKLRFVCEEMN 277


>gi|228904297|ref|ZP_04068392.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|228930754|ref|ZP_04093731.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228828844|gb|EEM74504.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228855382|gb|EEM99946.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 1097

 Score =  266 bits (680), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 140/738 (18%), Positives = 279/738 (37%), Gaps = 72/738 (9%)

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
            +   F   +    +T   +A       +       K    +     +   K   F +++
Sbjct: 104 FEGYGFDIKLYEQESTGYTEAYRTTKENVTAKF--KKDDLFDFFGIVERKKKILDFGNIN 161

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395
           D  S     QT +++      +   + ++ +    +V  + +Q+ ++ L T    +    
Sbjct: 162 DMDSPF--YQTIEEIMEANPDRDFSWLLDRN--YIMVTDETLQETIEYLNTFKVLAVDTE 217

Query: 396 TDTMDA-------FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           T  +D         H + + + I T  + +   F  +    D          G +    E
Sbjct: 218 TTGLDITFKSRTGEHDECVGL-IITGKEGESFYFPFKHTQFD------NLCGGDDWYFME 270

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI-MLMSYVLD-----SGRSS 502
             +Y+K   E +    I HN  +D  V++ YGI +    D   + S  L+          
Sbjct: 271 --TYMKPLLEKKDI--IVHNASFDWKVIYIYGIVLNVVIDTFAVFSLTLNAKYQTPVGLK 326

Query: 503 HDIASIAQKWLSYTRKEILKSRKSS---IPIDKISDSQVQEHAIENSNVILQLWLL-LRP 558
           H + S+  K  S    ++ K+            +    V+ +A  +++  L L+   L  
Sbjct: 327 H-LISLLLKRDSLELDDLCKNGDFGSIDQNFADLPKELVRLYACADADNTLALYHYMLET 385

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD--- 615
            ++         + +      +   E  G  ++ +   Q+  +I ++L   E  + +   
Sbjct: 386 NMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDIDRDLQEAERKMRNELR 445

Query: 616 ---LSGEKFNLSSPKQLGDILFTKLKFPSGAK------TKTGQWKTTAQDLEQINCGDNP 666
                 + FN  S  +   I++     P   K            K  ++     +    P
Sbjct: 446 KVNYDADNFNPQSNVEKLKIIYEVFGAPEQYKLDGKLTADKKALKNLSKMTNPDDTPKYP 505

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            +    E+ +++ ++  ++ +LP                    TGR++  +PN Q+    
Sbjct: 506 FVNYFQEFNEVNTLRKNFSKNLPEFCTPDGFMFSGVKQFL--KTGRVSISKPNYQSYN-- 561

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEI 785
                 +++     P   +   DYS IE R++A ++K   L + F++ + D H++ A+ +
Sbjct: 562 ----DTVKKYIKPRPGFWMGDMDYSSIEYRVIASMSKQLSLIEAFQDPNTDYHKLQASNM 617

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL--RIPRSE---AADYIKRYFHRFP 840
           + +  E VS  MR  AK  NF I +G+   +L   +  ++ +     A    +RYF    
Sbjct: 618 YQIPYELVSKAMRGEAKAFNFGIPFGMGNEKLGMTIFGKVSKENTRKATALRERYFKGQD 677

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + E+    +    + GY ET FGRR +Y++  +   SI+    R   N  IQG+AADI 
Sbjct: 678 NVREFFVNAQRDAVKYGYTETHFGRRRYYNKETTSVGSIK----RQGGNQRIQGTAADIY 733

Query: 901 RRAMISVHKSLEDHKLATKMLL--QIHDELVFEVPEEEIT-TASQIIVHSMEKACLPKIN 957
           ++A++ +   + +     K+LL   IHDEL+ EV  E       +++   ME        
Sbjct: 734 KQAVVRLFLRIINEGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEMELKVDGF-- 791

Query: 958 LRVPLKVNIKVSNNWQEE 975
              PL +   V  +W E 
Sbjct: 792 --CPLYIGFGVGRSWYEA 807


>gi|229010991|ref|ZP_04168186.1| 5'-3' exonuclease [Bacillus mycoides DSM 2048]
 gi|228750297|gb|EEM00128.1| 5'-3' exonuclease [Bacillus mycoides DSM 2048]
          Length = 288

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAIQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV          K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDTNVTAMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L      + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLEE-GLHTMDEEKLRFVCNEMN 277


>gi|315282899|ref|ZP_07871204.1| 5'-3' exonuclease [Listeria marthii FSL S4-120]
 gi|313613454|gb|EFR87293.1| 5'-3' exonuclease [Listeria marthii FSL S4-120]
          Length = 290

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/295 (32%), Positives = 153/295 (51%), Gaps = 14/295 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +    L +VDG + ++RAFYAT +  +     +G+P N + GF   ++  ++ S      
Sbjct: 3   ENREKLLVVDGMALLFRAFYATAVSKQFMFNQNGIPTNGVQGFMRHMFAAIRQSN----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI
Sbjct: 119 DCIGTITVQASN-TIATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + V ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K   ++  I 
Sbjct: 178 TPGQFVDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPA-QQTKIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           E      LS+KL  + T+VP+ I L  L  +        + ++      L   + 
Sbjct: 237 EDLAMLELSQKLARIHTEVPLEIDLPSLKYDGF-RDDAFAVVEKYGLKTLTRDIE 290


>gi|325922731|ref|ZP_08184469.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas gardneri ATCC 19865]
 gi|325546798|gb|EGD17914.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Xanthomonas gardneri ATCC 19865]
          Length = 328

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 11/309 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+        +H 
Sbjct: 16  ARPTPLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLERE----DPAHI 71

Query: 62  AVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            + FD      FR+ +YP YK NR   P+ L  Q    +    A G+  +  + +EADD+
Sbjct: 72  TIAFDEALDSCFRHALYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +  + A  +G    I+S DKDL QL+      +D  + ++ D+  V  ++G+   ++ 
Sbjct: 132 IGSALHSARAQGLRGVIVSADKDLSQLLVEHDEQWDYARNQRWDMHGVKARYGVHAHQIA 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------IL 234
              AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     +   + R        + 
Sbjct: 192 DYLALCGDAIDNIPGVTGIGAKSAAILLAHFGSLDALLERVDELPFLRLRGAAQMAVRLR 251

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  E A L R+L  +  + P+ +          +   L    ++L F  L  R       
Sbjct: 252 EQREHALLWRQLSTIALNAPLALTATGFTRAQADADMLTGLCESLRFGPLTRRRLLAACT 311

Query: 295 DAANIEPVV 303
            A    P V
Sbjct: 312 GAPAALPTV 320


>gi|289670887|ref|ZP_06491962.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 328

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 143/309 (46%), Gaps = 11/309 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q+   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    +    H 
Sbjct: 16  QRPTPLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPQ----HI 71

Query: 62  AVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            + FD      FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+
Sbjct: 72  TIAFDEALDSCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +  +     G    I+S DKDL QL+      +D  + ++  ++ V  + G+   ++ 
Sbjct: 132 IGSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGMDGVKARHGVHAHQIA 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------IL 234
              AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + 
Sbjct: 192 DYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLR 251

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  E A L R+L  +  D P+ +          +   L    ++L F  L  R       
Sbjct: 252 EQREHALLWRQLTTIALDAPLALTDTGFTRAHADADMLTGLCESLRFGPLTRRRLLAAST 311

Query: 295 DAANIEPVV 303
            A    P V
Sbjct: 312 GAPAPFPPV 320


>gi|196033518|ref|ZP_03100930.1| 5'-3' exonuclease family protein [Bacillus cereus W]
 gi|218902792|ref|YP_002450626.1| 5'-3' exonuclease family protein [Bacillus cereus AH820]
 gi|195993952|gb|EDX57908.1| 5'-3' exonuclease family protein [Bacillus cereus W]
 gi|218537582|gb|ACK89980.1| 5'-3' exonuclease family protein [Bacillus cereus AH820]
          Length = 288

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  +E   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSIEE-GLHTIDEEKLRFVCEEMN 277


>gi|319787968|ref|YP_004147443.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466480|gb|ADV28212.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 326

 Score =  265 bits (678), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 138/288 (47%), Gaps = 11/288 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   R   G P NA+ GF   L +LL+  R      H A+ FD
Sbjct: 21  LYLVDASLYVFRAWHSMPDEFRDAQGWPTNAVHGFARFLLELLERERPG----HIAIAFD 76

Query: 67  -YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                 FR+ IYP YK NR   P+ L  Q    +    A G+  +    +EADD+I T  
Sbjct: 77  EALDSCFRHRIYPAYKGNREPAPDELRRQFAHCKALCAALGLAVLAHTEYEADDLIGTAL 136

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           Y A   GF   I+S DKDL QL+      +D  +  +     V  + G+   ++    AL
Sbjct: 137 YRARPAGFRGVIVSADKDLSQLLGEHDEQWDFARGLRWGAAGVKARHGVHAHQIADYLAL 196

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYAET 239
           TGD++DNIPG+ GIG KTAA+LL  +G+L+ +L     +   + R        + E  E 
Sbjct: 197 TGDAVDNIPGVGGIGAKTAAILLSHFGSLDELLARVDEVAFLRLRGAAQVAARLREQREL 256

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           A L R+L  +  D P+          + +   L +    L F  +  R
Sbjct: 257 ALLFRQLTTIACDAPLGYAEAATPRGEADPEMLDALANTLRFGPMTRR 304


>gi|206974993|ref|ZP_03235908.1| 5'-3' exonuclease family protein [Bacillus cereus H3081.97]
 gi|217959163|ref|YP_002337711.1| 5'-3' exonuclease family protein [Bacillus cereus AH187]
 gi|222095307|ref|YP_002529367.1| 5'-3' exonuclease [Bacillus cereus Q1]
 gi|229138376|ref|ZP_04266970.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST26]
 gi|206747012|gb|EDZ58404.1| 5'-3' exonuclease family protein [Bacillus cereus H3081.97]
 gi|217066386|gb|ACJ80636.1| 5'-3' exonuclease family protein [Bacillus cereus AH187]
 gi|221239365|gb|ACM12075.1| 5'-3' exonuclease [Bacillus cereus Q1]
 gi|228645141|gb|EEL01379.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST26]
          Length = 288

 Score =  265 bits (678), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L   +Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTVKLSVPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVAAL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKLRFVCEEMN 277


>gi|78046504|ref|YP_362679.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78034934|emb|CAJ22579.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 328

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 144/309 (46%), Gaps = 11/309 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           ++   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    +    H 
Sbjct: 16  RRPTPLYLVDASLYVFRAWHSIPDEFQDVQGWPTNAVHGFARFLLDLLEREDPQ----HI 71

Query: 62  AVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            + FD      FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+
Sbjct: 72  TIAFDEALDSCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +  +     G    I+S DKDL QL+      +D  + ++  I+ V  + G+   ++ 
Sbjct: 132 IGSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGIDGVKARHGVHAHQIA 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------IL 234
              AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + 
Sbjct: 192 DYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLR 251

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  E A L R+L  +  D P+ +          +   L    ++L F  L  R       
Sbjct: 252 EQREHALLWRQLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGPLTRRRLLAAST 311

Query: 295 DAANIEPVV 303
            AA   P V
Sbjct: 312 GAAAPFPPV 320


>gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
 gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
          Length = 602

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 119/643 (18%), Positives = 247/643 (38%), Gaps = 68/643 (10%)

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
            +E    +S+ P++      +        +V +            T  +D +        
Sbjct: 1   MIEHRYGISEEPVSIKVVETVDGLTSFFDFVDR--NHQILGLDSETTGLDIYSK-----G 53

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                 +  +  +   I ++      + +                         + HN  
Sbjct: 54  FRCRTVQFGSPEEGWVIPVERGAVFREAAIAALRAAD---------------RFVLHNAS 98

Query: 471 YDKLVL-HRYGISMRG----FEDIMLMSYVLDS-----GRSSHDIASIAQKWLSYTRKEI 520
           YD  V     G+ M        D  ++++++D      G + H +  + + +L     + 
Sbjct: 99  YDLQVFDKCLGVPMEELWPKVVDTKILAHLVDPRGRKEGGTGHSLEELTRHYLDADVADT 158

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI---VEKLLHV-------YE 570
           +K+  + +  ++ +        +   N   QL+  + P L     +KL  +         
Sbjct: 159 VKTLMTDLAKEEKTTKANVWKKVSLDNPRYQLYAGMDPILACRLRQKLSPLVPVSARGLV 218

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
             ++ + +V S ME TG  +D D  +++S  +   L     +   LS    N++S  Q+ 
Sbjct: 219 GYERDLAEVCSVMERTGFLLDVDYTRKLSTRL--RLDESVASEIALSYGCENVNSTDQVA 276

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
           D+L  ++      +T TG+ +     L Q+    N   +++++ ++  K + T+ D    
Sbjct: 277 DVL-EQMGAWIPGRTPTGKKQVNDTLLAQLAKDGNEFARSVIDAKKAGKWRKTWVDRFLQ 335

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
            ++    R H   +     T R++  E   Q +P        IRR F++   + + S DY
Sbjct: 336 TVDPDG-RCHASINPLQARTARMSITEIPAQTLPAGD---WMIRRCFLADEGELIASVDY 391

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
              ELR+LA ++    + + F    D+H + A   FG +I K  P+ R++AK +NF  +Y
Sbjct: 392 QAQELRVLAALSGDPTMIRAFAEGQDLHLLTARAAFGDHITKDDPE-RKYAKVVNFGRVY 450

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G     ++ Q  +    A   +  +   +PG+     K +    ++G + T  GR +  D
Sbjct: 451 GGGAKTVSEQTGLGFMAAKQVVDGFDKAYPGVRVLSHKLQEEAVKSGQIVTPTGRVLPVD 510

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           +  +           AA+N  IQ ++ D+T +A+I +H++         + L IHDE++ 
Sbjct: 511 QDRA----------YAALNYLIQSTSRDVTGKALIRLHRA----GFGPNLRLPIHDEVLA 556

Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            VP  +    +  I   M +   P +   +     +    +W 
Sbjct: 557 SVPAAKARWGANRIAEIMREQMGPVL---IDTDAEVG-GRSWG 595


>gi|75759443|ref|ZP_00739536.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74493056|gb|EAO56179.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 1015

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 140/738 (18%), Positives = 279/738 (37%), Gaps = 72/738 (9%)

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
            +   F   +    +T   +A       +       K    +     +   K   F +++
Sbjct: 22  FEGYGFDIKLYEQESTGYTEAYRTTKENVTAKF--KKDDLFDFFGIVERKKKILDFGNIN 79

Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395
           D  S     QT +++      +   + ++ +    +V  + +Q+ ++ L T    +    
Sbjct: 80  DMDSPF--YQTIEEIMEANPDRDFSWLLDRN--YIMVTDETLQETIEYLNTFKVLAVDTE 135

Query: 396 TDTMDA-------FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           T  +D         H + + + I T  + +   F  +    D          G +    E
Sbjct: 136 TTGLDITFKSRTGEHDECVGL-IITGKEGESFYFPFKHTQFD------NLCGGDDWYFME 188

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI-MLMSYVLD-----SGRSS 502
             +Y+K   E +    I HN  +D  V++ YGI +    D   + S  L+          
Sbjct: 189 --TYMKPLLEKKDI--IVHNASFDWKVIYIYGIVLNVVIDTFAVFSLTLNAKYQTPVGLK 244

Query: 503 HDIASIAQKWLSYTRKEILKSRKSS---IPIDKISDSQVQEHAIENSNVILQLWLL-LRP 558
           H + S+  K  S    ++ K+            +    V+ +A  +++  L L+   L  
Sbjct: 245 H-LISLLLKRDSLELDDLCKNGDFGSIDQNFADLPKELVRLYACADADNTLALYHYMLET 303

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD--- 615
            ++         + +      +   E  G  ++ +   Q+  +I ++L   E  + +   
Sbjct: 304 NMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDIDRDLQEAERKMRNELR 363

Query: 616 ---LSGEKFNLSSPKQLGDILFTKLKFPSGAK------TKTGQWKTTAQDLEQINCGDNP 666
                 + FN  S  +   I++     P   K            K  ++     +    P
Sbjct: 364 KVNYDADNFNPQSNVEKLKIIYEVFGAPEQYKLDGKLTADKKALKNLSKMTNPDDTPKYP 423

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            +    E+ +++ ++  ++ +LP                    TGR++  +PN Q+    
Sbjct: 424 FVNYFQEFNEVNTLRKNFSKNLPEFCTPDGFMFSGVKQFL--KTGRVSISKPNYQSYN-- 479

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEI 785
                 +++     P   +   DYS IE R++A ++K   L + F++ + D H++ A+ +
Sbjct: 480 ----DTVKKYIKPRPGFWMGDMDYSSIEYRVIASMSKQLSLIEAFQDPNTDYHKLQASNM 535

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL--RIPRSE---AADYIKRYFHRFP 840
           + +  E VS  MR  AK  NF I +G+   +L   +  ++ +     A    +RYF    
Sbjct: 536 YQIPYELVSKAMRGEAKAFNFGIPFGMGNEKLGMTIFGKVSKENTRKATALRERYFKGQD 595

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            + E+    +    + GY ET FGRR +Y++  +   SI+    R   N  IQG+AADI 
Sbjct: 596 NVREFFVNAQRDAVKYGYTETHFGRRRYYNKETTSVGSIK----RQGGNQRIQGTAADIY 651

Query: 901 RRAMISVHKSLEDHKLATKMLL--QIHDELVFEVPEEEIT-TASQIIVHSMEKACLPKIN 957
           ++A++ +   + +     K+LL   IHDEL+ EV  E       +++   ME        
Sbjct: 652 KQAVVRLFLRIINEGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEMELKVDGF-- 709

Query: 958 LRVPLKVNIKVSNNWQEE 975
              PL +   V  +W E 
Sbjct: 710 --CPLYIGFGVGRSWYEA 725


>gi|229096174|ref|ZP_04227147.1| 5'-3' exonuclease [Bacillus cereus Rock3-29]
 gi|229115129|ref|ZP_04244539.1| 5'-3' exonuclease [Bacillus cereus Rock1-3]
 gi|228668269|gb|EEL23701.1| 5'-3' exonuclease [Bacillus cereus Rock1-3]
 gi|228687134|gb|EEL41039.1| 5'-3' exonuclease [Bacillus cereus Rock3-29]
          Length = 288

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V +++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYVLTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L      + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLRFVCNEMN 277


>gi|225629756|ref|ZP_03787705.1| DNA polymerase I [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591390|gb|EEH12481.1| DNA polymerase I [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 261

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/267 (38%), Positives = 157/267 (58%), Gaps = 8/267 (2%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           KE    ++DG  F++RA+Y  P L     G+P+  + GF NM+ K + +S       +  
Sbjct: 2   KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHS------DYLT 54

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +  D     FR+ +YP+YKANR   PE L PQ  ++R A +AF +   EI+G+EADDIIA
Sbjct: 55  IALDAGKKNFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114

Query: 123 TYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T     A  + F V ++S+DKDL QL++    ++D +K   ID + VI+K+G+   K++ 
Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLD 174

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L +LTGD+ DNIPG+PGIG KTAA LL E+ +L NI+ N   I+Q + R  + E+ E A 
Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN 268
           +SR+L+ L   V +   +    +   N
Sbjct: 235 ISRELLSLCEKVDLQHDIAKCEVRPPN 261


>gi|16803920|ref|NP_465405.1| hypothetical protein lmo1881 [Listeria monocytogenes EGD-e]
 gi|224500233|ref|ZP_03668582.1| hypothetical protein LmonF1_11349 [Listeria monocytogenes Finland
           1988]
 gi|224501320|ref|ZP_03669627.1| hypothetical protein LmonFR_02155 [Listeria monocytogenes FSL
           R2-561]
 gi|254827235|ref|ZP_05231922.1| 5'-3' exonuclease [Listeria monocytogenes FSL N3-165]
 gi|254831519|ref|ZP_05236174.1| hypothetical protein Lmon1_09198 [Listeria monocytogenes 10403S]
 gi|254899423|ref|ZP_05259347.1| hypothetical protein LmonJ_06404 [Listeria monocytogenes J0161]
 gi|254912438|ref|ZP_05262450.1| DNA polymerase I [Listeria monocytogenes J2818]
 gi|254936765|ref|ZP_05268462.1| 5'-3' exonuclease [Listeria monocytogenes F6900]
 gi|284802326|ref|YP_003414191.1| hypothetical protein LM5578_2082 [Listeria monocytogenes 08-5578]
 gi|284995468|ref|YP_003417236.1| hypothetical protein LM5923_2033 [Listeria monocytogenes 08-5923]
 gi|16411334|emb|CAC99959.1| lmo1881 [Listeria monocytogenes EGD-e]
 gi|258599618|gb|EEW12943.1| 5'-3' exonuclease [Listeria monocytogenes FSL N3-165]
 gi|258609361|gb|EEW21969.1| 5'-3' exonuclease [Listeria monocytogenes F6900]
 gi|284057888|gb|ADB68829.1| hypothetical protein LM5578_2082 [Listeria monocytogenes 08-5578]
 gi|284060935|gb|ADB71874.1| hypothetical protein LM5923_2033 [Listeria monocytogenes 08-5923]
 gi|293590421|gb|EFF98755.1| DNA polymerase I [Listeria monocytogenes J2818]
          Length = 290

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 95/295 (32%), Positives = 153/295 (51%), Gaps = 14/295 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++ S      
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGVQGFMRHMFAAIRQSN----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI
Sbjct: 119 DCIGTITVQASN-TIATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ D  PG+ GIG KTA  L+QEY ++E +L N  ++K   ++  I 
Sbjct: 178 SPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEYESIEGVLNNLDKLKPA-QQTKIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           E      LS+KL  + T+VP+ I L  L  +        + ++      L   + 
Sbjct: 237 EDLAMLELSQKLARIHTEVPLEIDLPSLKYDGFREDA-FAVVEKYGLKTLTRDIE 290


>gi|299821685|ref|ZP_07053573.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
 gi|299817350|gb|EFI84586.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
          Length = 290

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 94/294 (31%), Positives = 154/294 (52%), Gaps = 14/294 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            K+ +L +VDG + ++RAFYAT +  +     DG+P N + GF   L   L+    +S  
Sbjct: 3   SKQENLLVVDGMALLFRAFYATAVSKQFMFNQDGIPTNGVQGFMKHLLAALR----QSDP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKANR   PE ++PQ  L +     FG   + + G+EAD
Sbjct: 59  THALICWDMGSKTFRNELYDGYKANRTAPPEEMIPQFDLAKEVAAGFGFVNVGVPGYEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T     +  + T++S DKDL+QL+SP+  ++   K     ++ D     ++ GI
Sbjct: 119 DCIGTITASL-GQSLSTTVLSGDKDLLQLLSPSNQVWIMQKGFGNYKRYDEATFYEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++ + ++AL GD+ D  PG+ GIG KTA  L+Q +G++E +L N  ++K  ++R  I 
Sbjct: 178 TPKQFIDVKALMGDTSDGYPGVRGIGEKTALTLIQTFGSIEGVLANLEQLKPAQKR-KIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           E      LSR+L  +   VP+ +  E    +  +       ++      L    
Sbjct: 237 EDLAMLELSRQLAEIHVAVPLEVNYEQCRFDGFHSSA-QDVIQQYGLKMLAREF 289


>gi|285017276|ref|YP_003374987.1| exonuclease [Xanthomonas albilineans GPE PC73]
 gi|283472494|emb|CBA14999.1| putative exonuclease protein [Xanthomonas albilineans]
          Length = 307

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/289 (31%), Positives = 143/289 (49%), Gaps = 11/289 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L+L+D S +++RA++A P   +   G P NA+ GF   L  LL+  R +    H  V F
Sbjct: 10  PLYLIDASLYVFRAWHAIPDEFQDAQGWPTNAVHGFARFLLDLLERERPQ----HIVVAF 65

Query: 66  DYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D    T FR+ +YP YKANR   P+ L  Q    +    A G+  +    +EADD+I + 
Sbjct: 66  DEALDTCFRHRLYPAYKANRAPAPDALRRQFAHCQALCAALGLCVLADHHYEADDLIGSA 125

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
            + A  +GF   I+S DKDL QL+      +D  + ++     V  ++G+  +++    A
Sbjct: 126 LHRARGDGFHGVIVSADKDLSQLLLECDEQWDYGRGQRWGAAGVKARYGVHAQQIADYLA 185

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEYAE 238
           L+GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     +   + R        + E  +
Sbjct: 186 LSGDAIDNIPGVTGIGTKSAAILLAHFGDLDTLLARVDEVAFLRLRGAAQMAVRLREQRQ 245

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            A L R+L  +  D P+            +   L+   + L F  L  R
Sbjct: 246 HALLWRQLTTIALDAPLHTATPQFTRGTADTDILLGLCETLRFGPLTRR 294


>gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle]
          Length = 608

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 121/625 (19%), Positives = 241/625 (38%), Gaps = 63/625 (10%)

Query: 371 IVNTKDIQQWVQKLETI-GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           +    D+  ++  +    G       T  +D ++             +  T  +      
Sbjct: 18  VDRESDLDGFMDFIRAHQGFLGLDSETTGLDIYND-----GFRCRLVQFGTPSEAWV--- 69

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG--- 485
            + V       G      E++              + HN  YD  V  R  G+ M     
Sbjct: 70  -VPVERGGPYAGDVKRALEMVQGF-----------VLHNAAYDLQVFERTLGVPMEAMWP 117

Query: 486 -FEDIMLMSYVLDS-----GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
             +D  ++++++D      G S H +  + ++++     + +K+  + +     +     
Sbjct: 118 KVKDTRILAHLIDPRGKDEGGSGHSLEDLTRRYIDSAVADNVKTLMADLAKANKTTKVNV 177

Query: 540 EHAIENSNVILQLWLLLRPKLIVE---------KLLHVYERLDKPMIDVVSQMEITGIQI 590
              +   +   QL+  + P L            K+       +  +  + S ME TG  +
Sbjct: 178 WKKVPFEDPHYQLYSGMDPILAARLIQKLAPLVKVSDELVDNEHKLAAICSYMERTGFLL 237

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D +  +++S ++        E   +   EK N  S  Q+ D+L   +      +T +G+ 
Sbjct: 238 DVEYTEELSLDLQVKESHYNEIALNYGCEKVN--STDQVADVL-ESMGVRIKGRTPSGKR 294

Query: 651 KTTAQDLEQINCGDN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           K     L ++   +        ++E ++  K + T+ D      + +  R H   +    
Sbjct: 295 KVDDAVLSELVEHEKAGEFATAVIEAKKAGKWRKTWVDGFLKQRDSQN-RCHAAINPLRA 353

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            T R++      Q +P        IRR F++    ++ S DY   ELR+LA ++K   + 
Sbjct: 354 RTARMSITGIPAQTLPAGD---STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMI 410

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F +  D+H M A   FG +I+K  P+ R++AK +NF  +YG     +A Q  +  + A
Sbjct: 411 QAFLDDADLHLMTARAAFGEHIQKDDPE-RKYAKVVNFGRVYGGGAKTVAEQTGLDMATA 469

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
              +  +   +P + +  ++ +    +NGY+ T F      D +   +  +      +A+
Sbjct: 470 QKVVAGFDRAYPEVQKLSQRLQREAIRNGYITTPF-----IDGLGGRRLPVDPQRAYSAL 524

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N  IQ S+ D+T RA++ +H    D      + L IHDE++  VP E+    +  I   M
Sbjct: 525 NYLIQSSSRDVTCRALLRLH----DAGFTPYLRLPIHDEILASVPAEQAEWGANRIGELM 580

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQ 973
            +   P +    P    +    +W 
Sbjct: 581 AEQMGPVLIGTDP---EVG-GRSWG 601


>gi|47459323|ref|YP_016185.1| DNA polymerase I [Mycoplasma mobile 163K]
 gi|47458653|gb|AAT27974.1| DNA polymerase I [Mycoplasma mobile 163K]
          Length = 295

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/296 (30%), Positives = 145/296 (48%), Gaps = 10/296 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + L+DG+   +++F+AT  +        G+P NA+  F N ++KLL    KE   +H 
Sbjct: 4   NKILLIDGNLLAFKSFFATAYIGSSLQTSTGIPTNAVHTFINTIFKLL----KELNPTHI 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V FD P  TFR+E + +YK+ R   P+ L  Q   ++       I   E    EADD+I
Sbjct: 60  FVAFDKPGKTFRHEFFEEYKSKRQSTPDSLKVQFIYIKRVLSKMRICWFEESLIEADDLI 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEK 178
           AT+          V + S+DKDL+QLV+    +     + +    +  +  ++  I P +
Sbjct: 120 ATWVSKINTSKDEVIVYSSDKDLLQLVAKNVSVISKWDKNEYVIDNENNFFERHSIFPNQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +   +AL GD+ DN  GI GIG KTA  LL E+  +EN+  N + IK KK +E +    +
Sbjct: 180 IPDFKALAGDASDNYLGISGIGPKTAINLLSEFQIIENLYENLANIKSKKVKEVLELEKD 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
            A L +K+  L+TDV +   LE + L        +   + LE     ++    ++ 
Sbjct: 240 KAFLYKKIAKLKTDVNLNFSLEDIKLSYKFQKEAMEIFEELEMKNTSSKYLNVFNL 295


>gi|228938791|ref|ZP_04101392.1| 5'-3' exonuclease [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971673|ref|ZP_04132295.1| 5'-3' exonuclease [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228978282|ref|ZP_04138659.1| 5'-3' exonuclease [Bacillus thuringiensis Bt407]
 gi|228781299|gb|EEM29500.1| 5'-3' exonuclease [Bacillus thuringiensis Bt407]
 gi|228788086|gb|EEM36043.1| 5'-3' exonuclease [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228820869|gb|EEM66893.1| 5'-3' exonuclease [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326939296|gb|AEA15192.1| 5'-3' exonuclease [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 288

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 141/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV  +  +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKSVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLEE-GLHTMDEEKLRFVCEEMN 277


>gi|168830347|gb|ACA34443.1| Exo [uncultured bacterium pTW3]
          Length = 306

 Score =  264 bits (675), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 140/291 (48%), Gaps = 12/291 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
              L+LVD S +++RA+++ P      DG P NA+ GF   L +LL+  R      H AV
Sbjct: 7   RPTLYLVDASLYVFRAWHSMPDEFHDADGWPTNAVHGFARFLLELLERERPR----HIAV 62

Query: 64  IFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            FD      FRN +YP YKANR   PE L  Q    +    A G+  +  + +EADD+I 
Sbjct: 63  AFDEALDSCFRNALYPAYKANREPAPEALKRQFGQCKALCGALGLVTLAHREYEADDLIG 122

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           +  + A   G    I+S DKDL QL+      +D  + ++     V  + G+   ++   
Sbjct: 123 SALHHARTHGHRGVIVSADKDLSQLLGLHDEQWDFARGQRWGAAGVKARHGVDAHQIADY 182

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEY 236
            AL GD++DNIPG+PGIG KTAA+LL  +G+L+ +L     I   + R        +  +
Sbjct: 183 LALCGDAVDNIPGVPGIGAKTAAVLLAHFGSLDALLARIDEIPFLRFRGAAAAAAKLRAH 242

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            E A L R+L  +  D P+            +   L +   AL F  L  R
Sbjct: 243 REQALLCRQLSTIALDAPLDHA-HDFARAAADATGLRTLCDALSFGPLTRR 292


>gi|229078862|ref|ZP_04211415.1| 5'-3' exonuclease [Bacillus cereus Rock4-2]
 gi|228704544|gb|EEL56977.1| 5'-3' exonuclease [Bacillus cereus Rock4-2]
          Length = 288

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    I  I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSISVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV  +  +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKSVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N   +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L    + + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTMDEEKLRFVCEEMN 277


>gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein A [Trypanosoma brucei]
          Length = 958

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 142/653 (21%), Positives = 248/653 (37%), Gaps = 119/653 (18%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           ++   +  KDD       + ++L V  +++  G   +T      L          K G  
Sbjct: 314 VSFLVVRWKDDVIVYSAAVGLELLVRVAEELPGVEIVTFNAPCLLLPLL----SYKQG-- 367

Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
            K+                D+ LM+++L+    + + A   +   SY ++  L +     
Sbjct: 368 -KFFTS----------CVSDVRLMTWMLEPSADTAEFADYDKLLQSYQQQIGLPAG---- 412

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++       +E        +  L+ +L  +L    LL  + + +K +  + + M++ G 
Sbjct: 413 -LNAAECKGSKEAVSHRVFYMEPLYRMLYGRLGSHGLLPAFLKQEKRISIMCAAMKLNGF 471

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDL--SGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
            ++   +    A  ++ +  L      +  S   FN+ S       L+  LK      +K
Sbjct: 472 YVNLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSK 531

Query: 647 --------------TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
                          G   +T+++  +I    +   + ++ +R+L+K+  TY        
Sbjct: 532 GTEGSTENNSLILTRGGKLSTSEETLRILARHHEFPRILIAYRKLAKLLQTYVVGFMEMA 591

Query: 693 NK------------------------------RTQRVHTFYSLASTMTGRLASLEPNLQN 722
                                           +  ++H       T TGRL S+EPN+Q 
Sbjct: 592 IPIEEGDGEFTDFSISEQGKEAIPNASDRHKAKWAKLHPNLVQEGTETGRLTSVEPNMQA 651

Query: 723 IP--------------------------------------------IKTDLGQKIRRAFI 738
           +P                                            ++      IRR   
Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
            P    L+S DY Q+ELR+LAH++  + L  V   S DIHR +A  IF      V+ + R
Sbjct: 712 VPDGYSLVSLDYEQVELRVLAHLSGDSALISVLTKSGDIHRSIAEIIFRKTS--VTGEER 769

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
             AK + F I+YG  P  LA Q+ +   +A      +   FP +  Y  +  +  R +G 
Sbjct: 770 SLAKKVVFGILYGAGPRGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRSDGS 829

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLA 917
           V T+ GR     +IN    + R+  ER A N  +QGSAAD+ +  MI+V +  L+ H   
Sbjct: 830 VRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIAVEREVLQPHAPD 889

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
            ++LLQ+HDE++  VP   +     I+  +M  A    I+L VPL V  KV  
Sbjct: 890 VRLLLQVHDEIILSVPNHMLH---SIVPAAM-HAFAHPISLLVPLLVTTKVGR 938


>gi|163939495|ref|YP_001644379.1| 5'-3' exonuclease [Bacillus weihenstephanensis KBAB4]
 gi|163861692|gb|ABY42751.1| 5'-3' exonuclease [Bacillus weihenstephanensis KBAB4]
          Length = 288

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L      + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLEE-GLHTMDEEKLRFVCNEMN 277


>gi|166710776|ref|ZP_02241983.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 328

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 11/308 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L+LVD S +++RA+++ P   +   G P NA+ GF   L  +L+    +    H  
Sbjct: 17  RPTPLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDVLEREDPQ----HIT 72

Query: 63  VIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           + FD      FR+ IYP YK+NR   P+ L  Q    +    A G+  +  + +EADD+I
Sbjct: 73  IAFDEALDSCFRHAIYPAYKSNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLI 132

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            +  +     G    I+S DKDL QL+      +D  + ++  ++ V  + G+   ++  
Sbjct: 133 GSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGMDGVKARHGVHAHQIAD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILE 235
             AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + E
Sbjct: 193 YLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLRE 252

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A L R+L  +  D P+ +          +   L    ++L F  L  R        
Sbjct: 253 QREHALLWRRLTTIALDAPLALTEAGFTRAHADADMLTGLCESLRFGPLTRRRLLAASTG 312

Query: 296 AANIEPVV 303
            A   P V
Sbjct: 313 VAAPFPSV 320


>gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2]
 gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2]
          Length = 604

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 123/606 (20%), Positives = 243/606 (40%), Gaps = 64/606 (10%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G       T  +D +              +  T  +   I ++L     +++       +
Sbjct: 36  GFLGLDTETTGLDIYSDD-----FRCRLVQFGTPNEAWVIPVELGPRYEEEA-------R 83

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG----FEDIMLMSYVLDS---- 498
           + L  +K F        + HN  YD  V+ R  GI M        D  ++++++D     
Sbjct: 84  QALRNVKGF--------VLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFK 135

Query: 499 -GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
            G   H +  + + ++     E +K+  +++  +  +        +E +N   QL+  + 
Sbjct: 136 EGGIGHKLEELVKHYIDANVAENVKTLMATLAREYKTTKAHIWTKVELTNPYYQLYSGMD 195

Query: 558 PKLIVEKLLHV----------YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           P L    L  +              +  + ++ S ME  G  +D +  +++S ++ +   
Sbjct: 196 PILAARLLQKLIPLVPAVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQD 255

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
                   L G + N++SP Q+ + L  +       +T+TGQ K     L+++    +P+
Sbjct: 256 YWASKADILYGLE-NVNSPIQVAEALMRR-GVKIKERTETGQPKVDKVLLDRLIKEGDPL 313

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            + I E ++  K + T+     +  + +  R H   +     T R++      Q +P   
Sbjct: 314 AEAITEAKKWGKWEKTWVRKFLDSRDSKD-RCHANINPLQARTARMSITGIPAQTLPSGD 372

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                +RR F++   + + S DY   ELR+LA ++    + Q F++  D+H M A   + 
Sbjct: 373 ---WLVRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAWP 429

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
                     R++AKT+NF  +YG     +A Q  +    A   +  +   +PG+     
Sbjct: 430 DREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQRLSA 489

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           K +    QNG++ T  GRR+  D   +           +A+N  IQ ++ D+T  A+I +
Sbjct: 490 KLQREASQNGHIVTPKGRRLPVDPSRA----------YSALNYLIQSTSRDVTGEALIRL 539

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H    +      + L IHDE++  VPE++    +Q I   M +   P +    P    + 
Sbjct: 540 H----EAGFTKYLRLPIHDEILASVPEDKAQWGAQEIARLMAEQMGPVLIGTDP---EVG 592

Query: 968 VSNNWQ 973
              +W 
Sbjct: 593 -GRSWG 597


>gi|46908113|ref|YP_014502.1| 5'-3' exonuclease family protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|226224484|ref|YP_002758591.1| 5'-3' exonuclease [Listeria monocytogenes Clip81459]
 gi|254826077|ref|ZP_05231078.1| 5'-3' exonuclease [Listeria monocytogenes FSL J1-194]
 gi|254852784|ref|ZP_05242132.1| 5'-3' exonuclease [Listeria monocytogenes FSL R2-503]
 gi|254931949|ref|ZP_05265308.1| 5'-3' exonuclease [Listeria monocytogenes HPB2262]
 gi|254992231|ref|ZP_05274421.1| 5'-3' exonuclease [Listeria monocytogenes FSL J2-064]
 gi|290892993|ref|ZP_06555982.1| 5'-3' exonuclease [Listeria monocytogenes FSL J2-071]
 gi|300763809|ref|ZP_07073806.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|46881383|gb|AAT04679.1| 5'-3' exonuclease family protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|225876946|emb|CAS05655.1| Putative 5'-3' exonuclease [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258606111|gb|EEW18719.1| 5'-3' exonuclease [Listeria monocytogenes FSL R2-503]
 gi|290557353|gb|EFD90878.1| 5'-3' exonuclease [Listeria monocytogenes FSL J2-071]
 gi|293583501|gb|EFF95533.1| 5'-3' exonuclease [Listeria monocytogenes HPB2262]
 gi|293595318|gb|EFG03079.1| 5'-3' exonuclease [Listeria monocytogenes FSL J1-194]
 gi|300515545|gb|EFK42595.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|328466231|gb|EGF37388.1| 5'-3' exonuclease [Listeria monocytogenes 1816]
 gi|328473597|gb|EGF44434.1| 5'-3' exonuclease [Listeria monocytogenes 220]
 gi|332312322|gb|EGJ25417.1| 5'3'-exonuclease [Listeria monocytogenes str. Scott A]
          Length = 290

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 153/295 (51%), Gaps = 14/295 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++ S      
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAIRQSN----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI
Sbjct: 119 DCIGTITVQASN-TIATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K   ++  I 
Sbjct: 178 SPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPA-QQTKIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           E      LS+KL  + T+VP+ I L  L  +        + ++      L   + 
Sbjct: 237 EDLAMLELSQKLARIHTEVPLEIDLPSLKYDGFREDA-FAVVEKYGLKTLTRDIE 290


>gi|217963967|ref|YP_002349645.1| 5-3 exonuclease family protein [Listeria monocytogenes HCC23]
 gi|217333237|gb|ACK39031.1| 5-3 exonuclease family protein [Listeria monocytogenes HCC23]
 gi|307571463|emb|CAR84642.1| 5-3 exonuclease family protein [Listeria monocytogenes L99]
          Length = 290

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 153/295 (51%), Gaps = 14/295 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++ S      
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAIRQSN----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI
Sbjct: 119 DCIGTITVQASN-TIATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K   ++  I 
Sbjct: 178 SPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPA-QQTKIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           E      LS+KL  + T+VP+ I L  L  +        + ++      L   + 
Sbjct: 237 EDLAMLELSQKLARIHTEVPLEIDLPSLKYDGFREDA-FAVVEKYGLKTLTRDIE 290


>gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches]
 gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches]
          Length = 608

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 121/625 (19%), Positives = 241/625 (38%), Gaps = 63/625 (10%)

Query: 371 IVNTKDIQQWVQKLETI-GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           +    D+  ++  +    G       T  +D ++             +  T  +      
Sbjct: 18  VDRESDLDGFMDFIRAHQGFLGLDSETTGLDIYND-----GFRCRLVQFGTPSEAWV--- 69

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR---- 484
            + V       G      E++              + HN  YD  V  R  G+ M     
Sbjct: 70  -VPVERGGPYAGDVKRALEMVQGF-----------VLHNAAYDLQVFERTLGVPMETMWP 117

Query: 485 GFEDIMLMSYVLDS-----GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
             +D  ++++++D      G S H +  + ++++     + +K+  + +     +     
Sbjct: 118 KVKDTRILAHLIDPRGKDEGGSGHSLEDLTRRYIDSAVADNVKTLMADLAKANKTTKVNV 177

Query: 540 EHAIENSNVILQLWLLLRPKLIVE---------KLLHVYERLDKPMIDVVSQMEITGIQI 590
              +   +   QL+  + P L            K+       +  +  + S ME TG  +
Sbjct: 178 WKKVPFEDPHYQLYSGMDPILAARLIQKLAPLVKVSDELVENEHKLAAICSYMERTGFLL 237

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650
           D +  +++S ++        E   +   EK N  S  Q+ D+L   +      +T +G+ 
Sbjct: 238 DVEYTEELSLDLQVKESHYNEIALNYGCEKVN--STDQVADVL-ESMGVRIKGRTPSGKR 294

Query: 651 KTTAQDLEQINCGDN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
           K     L ++   +        ++E ++  K + T+ D      + +  R H   +    
Sbjct: 295 KVDDAVLSELVEHEKAGEFATAVIEAKKAGKWRKTWVDGFLKQRDSQN-RCHAAINPLRA 353

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
            T R++      Q +P        IRR F++    ++ S DY   ELR+LA ++K   + 
Sbjct: 354 RTARMSITGIPAQTLPAGD---STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMI 410

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828
           Q F +  D+H M A   FG +I+K  P+ R++AK +NF  +YG     +A Q  +  + A
Sbjct: 411 QAFLDDADLHLMTARAAFGEHIQKDDPE-RKYAKVVNFGRVYGGGAKTVAEQTGLDMATA 469

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
              +  +   +P + +  ++ +    +NGY+ T F      D +   +  +      +A+
Sbjct: 470 QKVVAGFDRAYPEVQKLSQRLQREAIRNGYITTPF-----IDGLGGRRLPVDPQRAYSAL 524

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N  IQ S+ D+T RA++ +H    D      + L IHDE++  VP E+    +  I   M
Sbjct: 525 NYLIQSSSRDVTCRALLRLH----DAGFTPYLRLPIHDEILASVPAEQAEWGANRIGELM 580

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQ 973
            +   P +    P    +    +W 
Sbjct: 581 AEQMGPVLIGTDP---EVG-GRSWG 601


>gi|255071395|ref|XP_002507779.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
 gi|226523054|gb|ACO69037.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
          Length = 1974

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 128/496 (25%), Positives = 208/496 (41%), Gaps = 89/496 (17%)

Query: 564  KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------- 616
            KL  V    +  ++  ++QME TG+  D  +L +   + ++ L  +E     L       
Sbjct: 1475 KLGDVLRDAEMRLVPALAQMEATGVAFDPSVLCRQMRQANRRLREIEREADALVSKQVPG 1534

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAK----TKTGQWKTTA-QDLEQINCGDNPIIKNI 671
            +   F+L+S   +  +LF  LK P           G+ +  A  ++       + +   +
Sbjct: 1535 AEPAFSLASSADVARVLFENLKLPPPPCAVVQCGNGRRRLRANAEVLAALKDQSDLPALV 1594

Query: 672  LEWRQLSKIKSTYADSLPNHI------------NKRTQRVHTFYSLASTMTGRLASLEPN 719
            LE R LS+     AD +                  +  R+       +T TGRLA  EPN
Sbjct: 1595 LEHRTLSR-CVAMADEMVELALGGARRDEGNSSRGKITRLRGAIHQTNTETGRLAMEEPN 1653

Query: 720  LQNIP-------------------------------------IKTDLGQKIRRAFISPPT 742
            LQ +P                                     + ++    +R AF++PP 
Sbjct: 1654 LQTVPKPRTFRMADAYDGRPGIIAPEGSAKAHKTREPSPGTEVGSEETLSVRNAFVAPPG 1713

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFEN--------SLDIHRMVAAEIFGVNIEKVS 794
              L+SADY Q+ELR++AH++    L + F +          D  R +A+   GV + KVS
Sbjct: 1714 AVLLSADYRQLELRVMAHMSGDEGLVRAFNHEGAPPHHPDADPFRFLASRWRGVEVGKVS 1773

Query: 795  PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
               R  AK + + ++YG  P R A ++ +  SEA   I+ +    PG+  + +K      
Sbjct: 1774 DADRAVAKQLAYGVLYGSGPARFAQEMGVTESEARVQIEAFKASVPGVERWRKKLIETAS 1833

Query: 855  QNG--YVETIFGRRIHY------------DEINSPKSSI--RNINERAAINAPIQGSAAD 898
            +     VETI GRR                  ++ +     R+ +ER A+N   QGSAAD
Sbjct: 1834 RASPPSVETICGRRRILSSLAPDAALTATGCEDAKRRFRLDRSADERRAVNTACQGSAAD 1893

Query: 899  ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            + +RAMI+V   L+        +LQIHDEL+FEV    +  A++ +   ME+A   +   
Sbjct: 1894 VVKRAMIAVFDELD--PSLATPVLQIHDELLFEVDASRVVEAARAVRAIMERAG-DEFGF 1950

Query: 959  RVPLKVNIKVSNNWQE 974
             VPL V +    NW +
Sbjct: 1951 TVPLPVKVSAGANWGD 1966


>gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C]
 gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C]
          Length = 1023

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 113/524 (21%), Positives = 225/524 (42%), Gaps = 80/524 (15%)

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQ 589
           D I    +  +A  + +  L+++ +L  ++    K+L ++      +   ++ +E +G+ 
Sbjct: 439 DWIPLEIMHPYASGDVDCCLRIYNVLYKRIEEHPKMLELWLGFYPRLTATLAHIEASGVL 498

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDL---------------SGEK-------------- 620
           +D +  + V    ++    L   I  L                G K              
Sbjct: 499 LDSEYAELVENIYTEEEHRLLNEIRKLPEVKEVEDEHMMFYKEGLKEMTKPVKDRDASVA 558

Query: 621 ----------------FNLSSPKQLGDILFTKLKFPSGAKTKTGQW-------------- 650
                           F  SS +  G +LF  +        ++ +               
Sbjct: 559 RLRDKYKITDSENKVHFKPSSSEHKGRLLFKVMGLTLPYDKESIKKETFDNGVPEHQLTW 618

Query: 651 --KTTAQDLEQINCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
               T +        + P    + + +LE+ +++ +K+ +A  LP   + +   +H  Y+
Sbjct: 619 RDYKTDKHALAYIAENYPEAKHVAELLLEYSKVNTLKNNFAQKLPKLASNKDGMIHGSYN 678

Query: 705 LASTMTGRLASLEPNLQNI------PIKTDLGQKIRRAFISP-PTKKLISADYSQIELRI 757
              T + RL++  PN+Q +      P + D    I+R F +      ++  DYS +E+RI
Sbjct: 679 STGTESTRLSANNPNMQQLSSKVGDPRRFDYKYPIKRLFRTRFEGGGMLQLDYSALEMRI 738

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           L  IAK   + Q F N  D+H   A+ ++ +  + V   MR+ AK++NF I YG SPF +
Sbjct: 739 LGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRAKSVNFGIAYGESPFSI 798

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A +L +   EA    + YF   P I ++IE+T  F ++ GYVET+ G R    +  S   
Sbjct: 799 APKLGVTVEEAERIFEEYFASKPSIKQFIEETHQFAQRYGYVETLQGHRRLLRDSFSKDK 858

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
            + N   R ++N  IQG+ A +T  +M+ + + +  H   +++++ +HD LV + P +E+
Sbjct: 859 KVFNGAMRKSVNTIIQGTGAYLTNLSMVYIDEYIRKHNKRSRIVITVHDSLVIDCPRDEV 918

Query: 938 TTASQIIVHSMEKACLPKI-------NLRVPLKVNIKVSNNWQE 974
              +++  + ME   +  +        +R P+  ++++  N+ +
Sbjct: 919 DEMAKVAKYIMENLPIDFLMIEWEGKEMRYPIVADVEIGENYND 962



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 80/199 (40%), Gaps = 19/199 (9%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA-SFKIITDTM--DAFHSKPIAIAIS 412
           +    +      Y  + N + ++Q    L+      ++ + T+++  D   +KP+ +++S
Sbjct: 189 EGEQAFIPKKVDYEFVDNIERVRQIFGFLDKTKPVTAWDLETNSLRGDLLGAKPLVMSMS 248

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            L+ +  T        I L  H ++ S  +     EI    +KF  +    K+G NI++D
Sbjct: 249 WLEGQGVT--------IPLEHHEAKWSPEE---LNEIYDLFEKFLADRQQPKVGQNIQFD 297

Query: 473 KLVLHR-YGI-SMRGFEDIMLMSYVLDSGR--SSHDIASIAQKWLSY-TRKEILKSRKSS 527
              L    G        D  +  Y++ S +  +S  ++ IA +        E L+  K  
Sbjct: 298 IRFLMNTKGFTEFEDNRDTKIAYYLIVSQKVDTSKRLSDIAYELTDMGGYDEPLEQYKKQ 357

Query: 528 IPIDKISDSQVQEHAIENS 546
              D I+  + +  A + +
Sbjct: 358 YKEDYIARKKAEIDAFKEA 376


>gi|21241682|ref|NP_641264.1| exodeoxyribonuclease IX [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107047|gb|AAM35800.1| exodeoxyribonuclease IX [Xanthomonas axonopodis pv. citri str. 306]
          Length = 328

 Score =  263 bits (673), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 140/308 (45%), Gaps = 9/308 (2%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q+   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    + I   F
Sbjct: 16  QRPTPLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPQYITIAF 75

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
               D     FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I
Sbjct: 76  DEALDS---CFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLI 132

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            +  +     G    I+S DKDL QL+      +D  + ++  ++ V  + G+   ++  
Sbjct: 133 GSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGMDGVKARHGVHAHQIAD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILE 235
             AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + E
Sbjct: 193 YLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLRE 252

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A L R+L  +  D P+ +          +   L    ++L F  L  R        
Sbjct: 253 QREHALLWRQLTTIALDAPLALTQTGFTRAHADADMLTGLCESLRFGPLTRRRLLAASTG 312

Query: 296 AANIEPVV 303
                P  
Sbjct: 313 VPAPFPPA 320


>gi|242373751|ref|ZP_04819325.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W1]
 gi|242348488|gb|EES40090.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W1]
          Length = 292

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 147/289 (50%), Gaps = 15/289 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           E  + LVDG + ++R FYAT L ++      G+P N + GF   ++  +    KE   +H
Sbjct: 2   EQRVLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGVQGFVRHIFSAI----KEINPTH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV +D    TFRNE++  YK NRP  P  L+PQ   V+  +Q FG   + +  +EADD+
Sbjct: 58  VAVCWDMGQQTFRNEMFEGYKQNRPAPPAELIPQFDYVKEISQQFGFVNVGVSNYEADDV 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I +      +    V II+ D+D++Q ++    ++ T K      +  +    +++G+ P
Sbjct: 118 IGSLAKEYSEHN-NVYIITGDRDILQCINDNVEVWLTKKGFTIYNRYTLNRFREEYGLEP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++A  GD+ D  PG+ GIG KTA  L+Q +  +EN++ N S +    +++ I + 
Sbjct: 177 KQLIDVKAFMGDTADGYPGVKGIGEKTAIKLIQNHHTVENVIENISTLTPA-QQKKINDN 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            +   LS+ L  + T VPI    E L  E      L   L      +L 
Sbjct: 236 IDNLHLSKSLAEIHTQVPIET--EKLFEEMTYAHELNDILSICNEHELY 282


>gi|315303809|ref|ZP_07874302.1| 5'-3' exonuclease [Listeria ivanovii FSL F6-596]
 gi|313627821|gb|EFR96461.1| 5'-3' exonuclease [Listeria ivanovii FSL F6-596]
          Length = 290

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 155/295 (52%), Gaps = 14/295 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++    +S  
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAIR----QSNP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVATGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     + T++S DKDL+QL++PT  ++   K     ++ +     ++ GI
Sbjct: 119 DCIGTITVQAAS-TISTTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYNEVTFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ D  PG+ GIG KTA  L+QEY ++E +L N +++K   ++  I 
Sbjct: 178 TPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEYESIEGVLSNLAKLKPA-QQTKIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           E      LS+KL  + T+VP+ + L+ L           S ++      L   V 
Sbjct: 237 EDLAMLELSQKLARIHTEVPLEMNLDSLKYNGFREDA-YSVIEKYGLKTLTRDVE 290


>gi|229166525|ref|ZP_04294278.1| 5'-3' exonuclease [Bacillus cereus AH621]
 gi|228616929|gb|EEK74001.1| 5'-3' exonuclease [Bacillus cereus AH621]
          Length = 288

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIAAL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L      + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLEE-GLHTMDEEKLRFVCNEMN 277


>gi|294626134|ref|ZP_06704741.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665198|ref|ZP_06730497.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292599583|gb|EFF43713.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605021|gb|EFF48373.1| exodeoxyribonuclease IX [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 328

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 11/310 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q+   L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    +    H 
Sbjct: 16  QRPTPLYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPQ----HI 71

Query: 62  AVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            + FD      FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+
Sbjct: 72  TIAFDEALDSCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDL 131

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           I +  +     G    I+S DKDL QL+      +D  + ++  ++ V  + G+   ++ 
Sbjct: 132 IGSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWGMDGVKARHGVHAHQIA 191

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------IL 234
              AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + 
Sbjct: 192 DYLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLR 251

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  E A L R+L  +  D P+ +          +   L    ++L F  L  R       
Sbjct: 252 EQREHALLWRQLTTIALDAPLALTQTGFTRAHTDADMLTGLCESLRFGPLTRRRLLAAST 311

Query: 295 DAANIEPVVL 304
                 P V 
Sbjct: 312 GVRAAFPPVF 321


>gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1]
 gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1]
          Length = 779

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 129/562 (22%), Positives = 240/562 (42%), Gaps = 71/562 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I     ++Q+V K+   G  S  + TD +D  H +   + + +  QK         I+
Sbjct: 65  ELITEEAKLEQYVDKMIEDGIGSIDVETDGLDTIHDELAGVCLYSPSQKG--------IY 116

Query: 429 IDLSVHTSQDST-GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL-VLHRYGISMR-G 485
             ++  ++      KN ++ E +  + +   +     I HN K+D   +  R G+ M   
Sbjct: 117 APVNHVSNMTKMRIKNQISPEFMKKMLQRIVDSGIPVIYHNSKFDMKSIYWRLGVKMNEP 176

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-SYTRKEILK--SRKSSIPIDKISDSQVQEHA 542
             D  L + +L+   S H + S+  K++ +    E+ K       IP   I       +A
Sbjct: 177 AWDTYLAAMLLNENES-HSLKSLHSKYVRNEENAEVAKFNDLFKGIPFSLIPPDVAYMYA 235

Query: 543 IENSNVILQLWLLLR----------PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             +     +L+               +  +EK+  V   ++ P+I V+  ME+ G+ +DQ
Sbjct: 236 AYDPLQTFELYEFQEQYLTPGTEQCEEYNLEKVSWVLHNIEMPLIKVLFDMEVYGVDLDQ 295

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGE---------------------------KFNLSS 625
           D L ++  + + N+   E+    L  E                             ++SS
Sbjct: 296 DKLAEIREQFTANMNEAEQEFQQLVSEWQPEIEELRQTNFQSYQKLEMDARGRVTVSISS 355

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           P QL  + +  +   S  + K      +  +       DN I K +L++R+ +K+ STY 
Sbjct: 356 PTQLAILFYDIMGLKSPERDKPRGTGESIVEH-----FDNDISKALLKYRKYAKLVSTYT 410

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
            +L  H+ K   R+HT +      TGR++S  PNLQNIP + + G  +R+ F +     +
Sbjct: 411 -TLDQHLAKPDNRIHTTFKQYGAKTGRMSSENPNLQNIPSRGE-GAVVRQIFAASEGHYI 468

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV------------ 793
           I +DYSQ E R LA ++    +   +E +LD++ ++ ++++GV  E+             
Sbjct: 469 IGSDYSQQEPRSLAELSGDESMRHAYEQNLDLYSVIGSKLYGVPYEECLEFYPDGTTNKE 528

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
               R   K++   ++YG     +A Q+ +   EA   I+ +F  FP + +YI   +   
Sbjct: 529 GKLRRNSVKSVLLGLMYGRGANSIAEQMNVSVKEANKVIEDFFTEFPKVADYIIFVQQQA 588

Query: 854 RQNGYVETIFGRRIHYDEINSP 875
           +  GYV+T  GRR    +++ P
Sbjct: 589 QDLGYVQTATGRRRRLPDMSLP 610



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 17/165 (10%)

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK--TKNFVRQNGYVETIFGRRIH 868
              PF      ++  +     I++Y+ +      + +K   K+  +  G           
Sbjct: 624 DFDPFNFDADQQMDDTVPEHIIEKYWAQLDRAWGFKKKQEIKDQAKAEG----------- 672

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
              +           +R  +N+ IQG+AAD+T+ AMI VH   E  +L   +++ +HDEL
Sbjct: 673 --ILIKDNGGKIADAQRQCLNSVIQGTAADMTKYAMIKVHNDAELKELGFHLMIPVHDEL 730

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           + EVP +     ++ +   M +A    I+L  P+K +  +   W 
Sbjct: 731 LGEVPIKNAKRGAERLTEVMIEAAKDIISL--PMKCDPSIVERWY 773


>gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder]
          Length = 604

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 122/606 (20%), Positives = 241/606 (39%), Gaps = 64/606 (10%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G       T  +D +              +  T  +   I ++L     +++       +
Sbjct: 36  GFLGLDTETTGLDIYSD-----GFRCRLVQFGTPNEAWVIPVELGPRYEEEA-------R 83

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG----FEDIMLMSYVLDS---- 498
           + L  +K F        + HN  YD  V+ R  GI M        D  ++++++D     
Sbjct: 84  QALRNVKGF--------VLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFK 135

Query: 499 -GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
            G   H +  + + ++     E +K+  +++  +  +        +E +N   QL+  + 
Sbjct: 136 EGGIGHKLEELVKHYIDAPVAENVKTLMATLAREYKTTKAHIWTKVEWTNPYYQLYAGMD 195

Query: 558 PKLIVEKLLHV----------YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           P L    L  +              +  + ++ S ME  G  +D +  +++S ++ +   
Sbjct: 196 PILAARLLQKLIPLVPSVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQD 255

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
                   L G + N++SP Q+ + L  +       +T+ GQ K     L+++    +P+
Sbjct: 256 YWASKADILYGLE-NVNSPIQVAEALMRR-GVKITERTEGGQPKVDKVLLDRLIKEGDPL 313

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            + I E ++  K + T+     +  + +  R H   +     T R++      Q +P   
Sbjct: 314 AEAISEAKKWGKWEKTWVRKFLDSRDSKD-RCHASINPLQARTARMSITGIPAQTLPSGD 372

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                +RR F++   + + S DY   ELR+LA ++    + Q F +  D+H M A   + 
Sbjct: 373 ---WLVRRCFLADEGELMASVDYQAQELRVLAALSGDRTMIQAFRDGADLHLMTARAAWP 429

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
                     R++AKT+NF  +YG     +A Q  +    A   +  +   +PG+ +   
Sbjct: 430 DREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQKLSR 489

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           K +    Q G++ T  GRR+  D   +           +A+N  IQ S+ D+T RA+I +
Sbjct: 490 KLQMEASQKGHIITPVGRRLPVDPSRA----------YSALNYLIQSSSRDVTGRALIRL 539

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H    +      + L IHDE++  VP ++    +Q I   M +   P +    P    + 
Sbjct: 540 H----EAGFTRYLRLPIHDEILASVPADKAQWGAQEIARLMAEQMGPVLVGTDP---EVG 592

Query: 968 VSNNWQ 973
              +W 
Sbjct: 593 -GRSWG 597


>gi|116873316|ref|YP_850097.1| 5'-3' exonuclease, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742194|emb|CAK21318.1| 5'-3' exonuclease, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 290

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 93/295 (31%), Positives = 155/295 (52%), Gaps = 14/295 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +     +G+P N + GF   ++  ++    +S  
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQNGIPTNGVQGFMRHMFAAIR----QSNP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T        A T++S DKDL+QL+ PT  ++   K     ++ +     ++ GI
Sbjct: 119 DCIGTITVQ-TSNTIATTVLSGDKDLLQLIRPTNEVWIMQKGYGNYKRYNEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++ + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K   ++  I 
Sbjct: 178 TPKQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPA-QQTKIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           E      LS+KL  + T+VP+ I L +L  +        S ++      L   + 
Sbjct: 237 EDLAMLELSQKLARIHTEVPLEINLANLKYDGFREDA-FSVVEKYGLKTLTRDIQ 290


>gi|228996795|ref|ZP_04156430.1| 5'-3' exonuclease [Bacillus mycoides Rock3-17]
 gi|229004471|ref|ZP_04162213.1| 5'-3' exonuclease [Bacillus mycoides Rock1-4]
 gi|228756803|gb|EEM06106.1| 5'-3' exonuclease [Bacillus mycoides Rock1-4]
 gi|228762972|gb|EEM11884.1| 5'-3' exonuclease [Bacillus mycoides Rock3-17]
          Length = 288

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAAQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTSKLSIPVIGLKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E + ++ G+ P 
Sbjct: 118 GTLAKEYASE-AEVYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIREEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVAAVLENIAAL-TKAQRTKIENDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  ++      + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKVRFVCDQMN 277


>gi|314933626|ref|ZP_07840991.1| 5'-3' exonuclease family protein [Staphylococcus caprae C87]
 gi|313653776|gb|EFS17533.1| 5'-3' exonuclease family protein [Staphylococcus caprae C87]
          Length = 292

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 148/288 (51%), Gaps = 15/288 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + +VDG + ++R FYAT L ++      G+P N + GF   ++  +    KE   +H 
Sbjct: 3   NRVLIVDGMALLFRHFYATSLHNQFMYNSKGIPTNGVQGFVRHIFSAI----KEINPTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRNE++  YK NRP+ P  L+PQ   V+  +Q FG   I +  +EADD+I
Sbjct: 59  AVCWDMGQQTFRNEMFEGYKQNRPEPPAELIPQFDYVKEISQQFGFVNIGVTNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            +  +        V II+ D+D++Q ++    ++ T K      +  ++    ++G+ P+
Sbjct: 119 GSLAHTYSDNN-EVFIITGDRDILQCINENVEVWLTKKGFTIYNRYTLDRFKNEYGLEPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D  PG+ GIG KTA  L+Q + ++EN++ N S +    +++ I +  
Sbjct: 178 QLIDVKAFMGDTADGYPGVKGIGEKTAIKLIQNHHSVENVIQNISTLIPA-QQKKINDNI 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
               LS+ L  + T VP+    E L  E      L   L      +L 
Sbjct: 237 NNLHLSKSLAEIHTQVPLES--EQLFNEMAYAHELNEILSICNEHELY 282


>gi|223043247|ref|ZP_03613294.1| DNA polymerase I (POL I) [Staphylococcus capitis SK14]
 gi|222443458|gb|EEE49556.1| DNA polymerase I (POL I) [Staphylococcus capitis SK14]
          Length = 292

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 149/288 (51%), Gaps = 15/288 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L ++      G+P N + GF   ++  +    KE   +H 
Sbjct: 3   NRVLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGVQGFVRHIFSAI----KEINPTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRNE++  YK NRP+ P  L+PQ   V+  +Q FG   I +  +EADD+I
Sbjct: 59  AVCWDMGQQTFRNEMFEGYKQNRPEPPAELIPQFDYVKEISQQFGFVNIGVTNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            +  +        V II+ D+D++Q ++    ++ T K      +  ++    ++G+ P+
Sbjct: 119 GSLAHSYSDNN-EVFIITGDRDILQCINENVEVWLTKKGFTIYNRYTLDRFKDEYGLEPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D  PG+ GIG KTA  L+Q + ++EN++ N S +    +++ I +  
Sbjct: 178 QLIDVKAFMGDTADGYPGVKGIGEKTAIKLIQNHHSVENVIQNISTLTPA-QQKKINDNM 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
              +LS+ L  + T VP+    E L  E      L   L      +L 
Sbjct: 237 NNLQLSKSLAEIHTQVPLKS--EQLFNEMAYAHELNEILSICNEHELY 282


>gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 288

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 132/209 (63%), Gaps = 1/209 (0%)

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           IELRI+AH++    L   F    DIH   AAEIFGV++++V+ + RR+AK INF +IYG+
Sbjct: 1   IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGM 60

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S F L+ QL I R +A  Y+  YF R+P + +++   +   +  GYVET+FGRR++  +I
Sbjct: 61  SAFGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDI 120

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           NS  +  R   ER AINAP+QG+AADI +RAMI + + +  H    +M++Q+HDELVFEV
Sbjct: 121 NSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEV 179

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVP 961
             E++    + I   ME A   K  L  P
Sbjct: 180 RSEKVAFFREQIKQHMEAAAEFKTRLNTP 208


>gi|323488671|ref|ZP_08093913.1| 5'-3' exonuclease [Planococcus donghaensis MPA1U2]
 gi|323397689|gb|EGA90493.1| 5'-3' exonuclease [Planococcus donghaensis MPA1U2]
          Length = 299

 Score =  261 bits (668), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 152/301 (50%), Gaps = 15/301 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K  H+ L+DG + ++R+F+AT  ++   R  +GL  N + GF   +      ++    
Sbjct: 1   MEK-PHVLLIDGMALLFRSFFATSAVNQYFRTTEGLATNGVQGFTRHVL----TAKTMMK 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV +D  + TFR +++  YKANRP  PE ++ Q    +  ++  G       G EA
Sbjct: 56  PTHMAVCWDMGSKTFRTDLFDGYKANRPAPPEDMVHQFDWAQEISEQLGWKNYGEAGIEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD I ++T   + +    TII+ DKD++QL++P+  +    K     +       I+++G
Sbjct: 116 DDFIGSFTKQWQDQ-VDFTIITGDKDMLQLLTPSVNIAFMKKGFHVYDVYTEARFIEEYG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +   ++A  GD  D  PG+ GIG KTA  L+Q YG+   +L     +K   +++ I
Sbjct: 175 IQPSQFADVKAFMGDPSDGYPGVKGIGPKTALQLIQNYGSTNGVLEAIEELKPA-QKKKI 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            E+ +   LS+KL +++ D+ + + LE + + +      I   +  + T L  ++     
Sbjct: 234 DEHKDMLLLSKKLAVIKCDIQLDVSLEEITVPNYTNDH-IQLCRDQQLTLLAKQLEKNVG 292

Query: 294 C 294
            
Sbjct: 293 A 293


>gi|311086162|gb|ADP66244.1| DNA polymerase I [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
          Length = 312

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 95/287 (33%), Positives = 151/287 (52%), Gaps = 10/287 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K N + ++DGS ++Y ++YA   L     G P  AI G   ++  + +  +         
Sbjct: 5   KNNPVIIIDGSLYLYASYYAFCNLENTS-GKPCGAIYGMLKIIDNIFKKYKNLKK---II 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +IFD    TFRN+++ +YK NR  +P++L+ Q+  +    +  GI  + I G EADD+I 
Sbjct: 61  IIFDSSRKTFRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           + +Y  EK+G  + I+S DKD++QLV+    ++       I  E + +K+GI P++ +  
Sbjct: 121 SLSYQLEKQGEKILILSHDKDMLQLVTENINIFHKKNNCIITSEIIQEKYGIKPKEFIDF 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEY 236
            AL GD+ DNIPG+P IG KTA  L+ ++ N+ENI  N  +IK    R        +   
Sbjct: 181 LALMGDATDNIPGVPKIGIKTALFLINKFSNIENIYNNIEKIKSLPLRNAKNISIQLKNN 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
            E A LS KL  ++ D+PI I L+ +IL+           K   F K
Sbjct: 241 KEIALLSYKLARIKLDIPIDIKLKDIILKKYCSKNTFQIFKNYFFHK 287


>gi|16801060|ref|NP_471328.1| hypothetical protein lin1994 [Listeria innocua Clip11262]
 gi|16414495|emb|CAC97224.1| lin1994 [Listeria innocua Clip11262]
          Length = 290

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 153/295 (51%), Gaps = 14/295 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++ S      
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAIRQSN----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     + T++S DKDL+QL++PT  ++   K     ++ +     ++ GI
Sbjct: 119 DCIGTITVQASS-SISTTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYNEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++ + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++   I 
Sbjct: 178 TPKQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQL-KIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           E      LS+KL  + T+VP+ + L  L           + ++      L   + 
Sbjct: 237 EDLAMLELSQKLAKIHTEVPLEMNLASLKYNGF-RDDAFAVVEKYGLKTLTRDIE 290


>gi|291532674|emb|CBL05787.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Megamonas hypermegale ART12/1]
          Length = 215

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/218 (38%), Positives = 131/218 (60%), Gaps = 4/218 (1%)

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +AH+++       F ++ DIH   AA++F V I++V+ ++R  AK +NF IIYGIS F L
Sbjct: 1   MAHMSEDKHFIDAFCHNQDIHTATAAQVFKVPIDEVTSELRGKAKAVNFGIIYGISAFGL 60

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A  L I   EA +YI  Y     G+  ++ +      Q+G+V T+FGRR +   I S   
Sbjct: 61  AKNLHISPKEAGEYIDNYLQECSGVKNFMHEIVEKAHQDGFVTTLFGRRRYLPAIKSSNF 120

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           + R + ER A+N PIQG+AADI + AM    +++++ KL +++LLQ+HDELV EV +EEI
Sbjct: 121 NQRALAERMAMNTPIQGTAADIIKIAMNRASEAIKEAKLKSRILLQVHDELVLEVVKEEI 180

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              S+I+  +M+       +L+VPL ++I    NW E 
Sbjct: 181 EKVSEILTTAMQNTA----SLKVPLIIDINYGKNWAEA 214


>gi|229132491|ref|ZP_04261342.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST196]
 gi|228650987|gb|EEL06971.1| 5'-3' exonuclease [Bacillus cereus BDRD-ST196]
          Length = 288

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    +P I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSMPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QEYG +  +L N + +  K +   I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEYGTVSAVLENIASL-TKAQHTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  +L      + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCLLEE-GLHTMDEEKLRFVCNEMN 277


>gi|313623190|gb|EFR93447.1| 5'-3' exonuclease [Listeria innocua FSL J1-023]
          Length = 290

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 153/295 (51%), Gaps = 14/295 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++ S      
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAIRQSN----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     + T++S DKDL+QL++PT  ++   K     ++ +     ++ GI
Sbjct: 119 DCIGTITVQASN-SISTTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYNEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P++ + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K  ++   I 
Sbjct: 178 TPKQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQL-KIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           E      LS+KL  + T+VP+ + L  L           + ++      L   + 
Sbjct: 237 EDLAMLELSQKLAKIHTEVPLEMNLASLKYNGF-RDDAFAVVEKYGLKTLTRDIE 290


>gi|219681782|ref|YP_002468168.1| DNA polymerase I [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682337|ref|YP_002468721.1| DNA polymerase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471484|ref|ZP_05635483.1| DNA polymerase I [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219622070|gb|ACL30226.1| DNA polymerase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624625|gb|ACL30780.1| DNA polymerase I [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311086734|gb|ADP66815.1| DNA polymerase I [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087830|gb|ADP67909.1| DNA polymerase I [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 286

 Score =  261 bits (667), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 151/286 (52%), Gaps = 10/286 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K N + ++DGS ++Y ++YA   L     G P  AI G   ++  + +  +         
Sbjct: 5   KNNPVIIIDGSLYLYASYYAFCNLENTS-GKPCGAIYGMLKIIDNIFKKYKNLKK---II 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +IFD    TFRN+++ +YK NR  +P++L+ Q+  +    +  GI  + I G EADD+I 
Sbjct: 61  IIFDSSRKTFRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           + +Y  EK+G  + I+S DKD++QLV+    ++       I  E + +K+GI P++ +  
Sbjct: 121 SLSYQLEKQGEKILILSHDKDMLQLVTENINIFHKKNNCIITSEIIQEKYGIKPKEFIDF 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEY 236
            AL GD+ DNIPG+P IG KTA  L+ ++ N+ENI  N  +IK    R        +   
Sbjct: 181 LALMGDATDNIPGVPKIGIKTALFLINKFSNIENIYNNIEKIKSLPLRNAKNISIQLKNN 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
            E A LS KL  ++ D+PI I L+ +IL+           K   F+
Sbjct: 241 KEIALLSYKLARIKLDIPIDIKLKDIILKKYCSKNTFQIFKNYFFS 286


>gi|258422527|ref|ZP_05685435.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257847284|gb|EEV71290.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 292

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLARQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLNRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  S  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------SLFEKMAFATTLNHILS 274


>gi|311087322|gb|ADP67402.1| DNA polymerase I [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 286

 Score =  261 bits (666), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 151/286 (52%), Gaps = 10/286 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K N + ++DGS ++Y ++YA   L     G P  AI G   ++  + +  +         
Sbjct: 5   KNNPVIIIDGSLYLYASYYAFFNLENTS-GKPCGAIYGMLKIIDNIFKKYKNLKK---II 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +IFD    TFRN+++ +YK NR  +P++L+ Q+  +    +  GI  + I G EADD+I 
Sbjct: 61  IIFDSSRKTFRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           + +Y  EK+G  + I+S DKD++QLV+    ++       I  E + +K+GI P++ +  
Sbjct: 121 SLSYQLEKQGEKILILSHDKDMLQLVTENINIFHKKNNCIITSEIIQEKYGIKPKEFIDF 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEY 236
            AL GD+ DNIPG+P IG KTA  L+ ++ N+ENI  N  +IK    R        +   
Sbjct: 181 LALMGDATDNIPGVPKIGIKTALFLINKFSNIENIYNNIEKIKSLPLRNAKNISIQLKNN 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
            E A LS KL  ++ D+PI I L+ +IL+           K   F+
Sbjct: 241 KEIALLSYKLARIKLDIPIDIKLKDIILKKYCSKNTFQIFKNYFFS 286


>gi|229084688|ref|ZP_04216955.1| 5'-3' exonuclease [Bacillus cereus Rock3-44]
 gi|228698644|gb|EEL51362.1| 5'-3' exonuclease [Bacillus cereus Rock3-44]
          Length = 288

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAAQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTSKLSIPVIGLKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKEYASE-AEVYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVAAVLENMAAL-TKAQRTKIESDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  ++      + 
Sbjct: 236 ENLNISLQLAKIHCEVPISCSLEE-GLHTIDEEKVRFVCGEMN 277


>gi|298694732|gb|ADI97954.1| probable 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 292

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSD---------------ALFEKMSFATTLNHILS 274


>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
          Length = 1118

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 110/333 (33%), Positives = 162/333 (48%), Gaps = 28/333 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   ++ + S +   L +  I+ +  R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 784  IAALCEVCSINSLISNFILPLQDGEISGKNGRIHCSLNI-NTETGRLSARRPNLQNQPAL 842

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AFI+ P   LI ADY Q+ELRILAH+A    +   F+   D H   A  ++
Sbjct: 843  EKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMY 902

Query: 787  GVNIEKVSP--------------------------QMRRHAKTINFSIIYGISPFRLATQ 820
                E V                              RR AK +NFSI YG +   LA  
Sbjct: 903  PHIREAVEKREVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARD 962

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA + ++R++     +  + EK K       YV T+ GR   +  ++   +S R
Sbjct: 963  WKVSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQR 1022

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               ERAAIN P+QGSAAD+   AM+ + ++    +L  K+LLQ+HDE++ E P E    A
Sbjct: 1023 GHIERAAINTPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVA 1082

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  MEK    K  L V L V+ K + NW 
Sbjct: 1083 KAIVVECMEKPFDGKNILSVDLAVDAKCAQNWY 1115



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 139/394 (35%), Gaps = 69/394 (17%)

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           VV    +   K +    E +   +   +  +  +D++++ +           +L+   + 
Sbjct: 268 VVQSNGSLSMKPLEDREEANFIFSRDRAADAIENDESNERSIIPATGTHAFSQLEARRKL 327

Query: 362 PINNDSYTKIVNTKDIQQWVQKL---ETIGSASFKIITDTMDAF------HSKPIAIAIS 412
               +    + +    ++ V+KL         +       +D        H + I  +I 
Sbjct: 328 SKIYEKVLIVDDIYVAKKIVRKLTTQYKHLIHACDTEVANIDVKRETPVDHGEIICFSIY 387

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           +  + D  + K   I++D+      D  G++ L +        FFE+    K+ HN  +D
Sbjct: 388 SGPEADFGNGKSC-IWVDV-----LDGGGRDLLVE-----FAPFFEDPSIQKVWHNYSFD 436

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASIAQK------WLSYTRKEILK 522
             V+  Y + + GF  D M M+ + DS R     + + ++ +             +E++ 
Sbjct: 437 NHVIENYDLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMSGAHMSNGEELIG 496

Query: 523 S-------RKSSIPIDKISDSQVQ----------------EHAIENSNVILQLWLLLRPK 559
                    K  +  D      +                  ++  +S   L+L+  ++ K
Sbjct: 497 KVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMKNK 556

Query: 560 LIVEK----------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           L+ ++          +   Y++  +P  +++ QME  G+ +D+  L +V           
Sbjct: 557 LLDKEWLLDGARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAEEQVA 616

Query: 610 EENIYDLSGEK------FNLSSPKQLGDILFTKL 637
                + + +        N+ S  QL  +LF  +
Sbjct: 617 ANRFRNWASKHCPDAKYMNVGSDTQLRQLLFGGV 650


>gi|228990698|ref|ZP_04150663.1| 5'-3' exonuclease [Bacillus pseudomycoides DSM 12442]
 gi|228769224|gb|EEM17822.1| 5'-3' exonuclease [Bacillus pseudomycoides DSM 12442]
          Length = 288

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAAQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTSKLFIPVIGLKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E + ++ G+ P 
Sbjct: 118 GTLAKEYASE-AEVYILTGDTDLLQLVDTNVTVMLLRKGIGNYEYYTPEKIREEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++V  +A  GD+ DN PG+ GIG KTA  L+QE+G +  +L N + +  K +R  I    
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVAAVLENIAAL-TKAQRTKIENDL 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
           E   +S +L  +  +VPI+  LE   L   +  ++      + 
Sbjct: 236 ENLNISLQLAQIHCEVPISCSLEE-GLHTIDEEKVRFVCDQMN 277


>gi|195952416|ref|YP_002120706.1| 5'-3' exonuclease [Hydrogenobaculum sp. Y04AAS1]
 gi|195932028|gb|ACG56728.1| 5'-3' exonuclease [Hydrogenobaculum sp. Y04AAS1]
          Length = 299

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 109/299 (36%), Positives = 171/299 (57%), Gaps = 14/299 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + ++++DGS+F+YR++YA P L +  DG+   A  GF   L+ +L+  + E    +FA+ 
Sbjct: 2   DTIYVLDGSAFLYRSYYALPSL-KTEDGVETGAFYGFIRALFSILKAKKPE----YFAIA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD PA T R++IY +YKA R + P  L+ Q+PL++ A    GI  +E +G EADDIIA  
Sbjct: 57  FDLPAPTVRDKIYKEYKATRKETPSELVSQIPLIKQAINLLGIRLLEKEGLEADDIIAYI 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            + +++    +TI + DKDLMQLV      + + +  +  D E VI+K+G+PP ++    
Sbjct: 117 AHKSKEWNKNLTIYTPDKDLMQLVEDKKIIVINPITNKVFDEEAVIEKFGVPPSRLADYL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS+DNI GI G+G K A  LL++YG++ENIL N   I QK  +E      E   L+
Sbjct: 177 ALIGDSVDNIKGIKGVGPKKAVELLEKYGSIENILNNWDEI-QKTFKE---ASKEDLELA 232

Query: 244 RKLVMLRTDV---PITIPLEHLILE-DCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            KL+ L T+     I I L+ L +  + +  ++  F  A     LI  + T +   ++ 
Sbjct: 233 YKLIKLNTEEILNMINIHLKDLKISYNIDLKKVEEFFMAFNMKSLIKDLNTIFKEKSSE 291


>gi|70726471|ref|YP_253385.1| hypothetical protein SH1470 [Staphylococcus haemolyticus JCSC1435]
 gi|68447195|dbj|BAE04779.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 292

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 86/260 (33%), Positives = 139/260 (53%), Gaps = 13/260 (5%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           EN + LVDG + ++R FYAT L ++       +P N I GF   ++  +         SH
Sbjct: 2   ENRVLLVDGMALLFRHFYATSLHNQFMYNSKDIPTNGIQGFVRHIFTAINEIN----PSH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            AV +D    TFRN++Y DYK NRP  PE L+PQ   V+  +  FG   + +  +EADD+
Sbjct: 58  VAVCWDMGQSTFRNDMYTDYKQNRPAPPEELIPQFDYVKEISDQFGFINVGMTNYEADDV 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T           V II+ DKDL+Q ++    ++   K      +  +    +++ + P
Sbjct: 118 IGTLAKTFSDNN-EVHIITGDKDLLQCINNNVEVWLIKKGFNIYNRYTLARFNEEYQLNP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++++ ++A  GDS D  PG+ GIG KTA  L+Q YG++EN+L N  ++    +R+ I   
Sbjct: 177 QQLIDIKAFMGDSADGYPGVKGIGEKTALKLIQTYGSVENVLSNIDQLTPA-QRKKIEAD 235

Query: 237 AETARLSRKLVMLRTDVPIT 256
            +   LS++L  + T+VP+ 
Sbjct: 236 KDNLTLSKRLAEIYTEVPLN 255


>gi|126661491|ref|ZP_01732543.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126617218|gb|EAZ88035.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 259

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/253 (33%), Positives = 128/253 (50%), Gaps = 21/253 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           L L+DG S  +RA+YA         R   G+P +   GF N L ++++    +    + A
Sbjct: 10  LMLIDGHSLAFRAYYAFAKARKGPLRTSTGIPTSVCFGFLNSLIQVIKLENPQ----YIA 65

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           + FD    TFR+E   +YKA+R + PE  +P +  ++   +A  I  I   G+EADDI+ 
Sbjct: 66  IAFDSKEPTFRHEADVNYKADRKETPEDFIPDILNLQRLLEALNITIITSPGYEADDILG 125

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT------------TCLYDTVKEEKIDIEHVIK 170
           T      + G+ V I+S D+DL QLV+                        + DI+ V +
Sbjct: 126 TVATKGSEAGYRVKIVSGDRDLFQLVNDENNLSVLYLERNAVKSSSGEGYTEFDIDAVKE 185

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           K GI P +++  +AL GD  DNIPG+ GIG KTA  LL EYG+LE I  N   IK    +
Sbjct: 186 KMGIKPTQVIDYKALCGDKSDNIPGVRGIGEKTAVKLLSEYGSLEEIYNNIENIKGA-NQ 244

Query: 231 ENILEYAETARLS 243
           + + E  + A+ S
Sbjct: 245 KKLKEGEKDAKHS 257


>gi|315195335|gb|EFU25722.1| hypothetical protein CGSSa00_06690 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 292

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFANIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------ALFEKMSFATTLNHILS 274


>gi|196232728|ref|ZP_03131579.1| 5'-3' exonuclease [Chthoniobacter flavus Ellin428]
 gi|196223188|gb|EDY17707.1| 5'-3' exonuclease [Chthoniobacter flavus Ellin428]
          Length = 323

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 156/292 (53%), Gaps = 15/292 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG  ++YR+F+A   LS    G P NAI GF   + +++++ + +      A+++
Sbjct: 2   KLLLIDGHYYVYRSFFAIRELSNSR-GEPTNAIYGFIKTVRRMVKDLQPDLG----AIMW 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R  + P YK  R ++P+++ PQL  ++      G  ++ +   EADD++ TY 
Sbjct: 57  DMGMPQRRVALQPAYKQQRAEMPDLMRPQLTFIQNLVPMLGFASVWLPDTEADDLMGTYA 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---------IDIEHVIKKWGIPP 176
             A   G  V + + DKDL QLV+    +Y T K +          + I+ V KKWG+ P
Sbjct: 117 VAARARGDDVVLATNDKDLFQLVNGNVKVYSTNKTDLAAPSDTHALLGIDAVRKKWGVEP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           +++  + AL GD++DNIPG+ G+G K AA LL  +G+L+ +L N   +K ++ RE +   
Sbjct: 177 QQIGDVLALIGDTVDNIPGVEGVGPKGAATLLNTHGSLDALLANLDAVKNERTREKLKAS 236

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
                 +R++V L  D+P+  PL+ L +       LI+ L+  EF  L+  V
Sbjct: 237 RAQIEQNREMVRLDLDLPLPEPLDALAIR-PRWNDLIAELEKCEFKSLLAEV 287


>gi|291461228|ref|ZP_06600301.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378193|gb|EFE85711.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 370

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 140/308 (45%), Gaps = 20/308 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA++A      K++  P  A+ GF N L  +++    +    + A  
Sbjct: 2   KRAVLLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIIKEFNPD----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    +  R EIY DYK+NR   PE L+ Q+P +     AF I    I+ +EADD++ +
Sbjct: 56  FDVKRSSLKRTEIYADYKSNRQSTPEDLVAQIPRIEEVLDAFNINRYRIESYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---EEKI----DIEHVIKKWGIPP 176
                 K+   V I++ DKDL QLV     +    K    EK       E V+   G+ P
Sbjct: 116 IAKKIAKDDLEVIIVTGDKDLSQLVEKNITIALLGKGAEGEKFGMLRTAEDVVNYLGVVP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRE 231
           EK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +
Sbjct: 176 EKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSKYDSLEKIYENIDDLKNIEGIGPSLIK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           N+    + A LSR+L  + T++ I    E+L     +  +L    K LEF   I ++   
Sbjct: 236 NLTNEKDIAFLSRELAKIFTNLDINADEENLKYS-MDKEKLYELCKVLEFKMFIKKLNLE 294

Query: 292 YDCDAANI 299
                +  
Sbjct: 295 EKTQTSKT 302


>gi|323438502|gb|EGA96252.1| 5'-3' exonuclease [Staphylococcus aureus O11]
 gi|323441343|gb|EGA99005.1| 5'-3' exonuclease [Staphylococcus aureus O46]
          Length = 292

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGIPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------ALFEKMSFATTLNHILS 274


>gi|282916707|ref|ZP_06324465.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282319194|gb|EFB49546.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus D139]
          Length = 292

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDLFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------ALFEKMSFATTLNHILS 274


>gi|15924430|ref|NP_371964.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927021|ref|NP_374554.1| hypothetical protein SA1273 [Staphylococcus aureus subsp. aureus
           N315]
 gi|82751040|ref|YP_416781.1| 5'-3' exonuclease [Staphylococcus aureus RF122]
 gi|148267927|ref|YP_001246870.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus JH9]
 gi|150393990|ref|YP_001316665.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus JH1]
 gi|156979759|ref|YP_001442018.1| hypothetical protein SAHV_1428 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315949|ref|ZP_04839162.1| hypothetical protein SauraC_07342 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253733314|ref|ZP_04867479.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006227|ref|ZP_05144828.2| hypothetical protein SauraM_07160 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425506|ref|ZP_05601931.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428165|ref|ZP_05604563.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430795|ref|ZP_05607177.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433553|ref|ZP_05609911.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus E1410]
 gi|257436395|ref|ZP_05612442.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus M876]
 gi|257795504|ref|ZP_05644483.1| 5'-3' exonuclease [Staphylococcus aureus A9781]
 gi|258413314|ref|ZP_05681590.1| 5'-3' exonuclease [Staphylococcus aureus A9763]
 gi|258420579|ref|ZP_05683521.1| 5'-3' exonuclease [Staphylococcus aureus A9719]
 gi|258426776|ref|ZP_05687996.1| 5'-3' exonuclease [Staphylococcus aureus A9299]
 gi|258444774|ref|ZP_05693103.1| 5'-3' exonuclease [Staphylococcus aureus A8115]
 gi|258449723|ref|ZP_05697824.1| 5'-3' exonuclease [Staphylococcus aureus A6224]
 gi|258454608|ref|ZP_05702572.1| 5'-3' exonuclease [Staphylococcus aureus A5937]
 gi|269203063|ref|YP_003282332.1| 5'-3' exonuclease, putative [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892935|ref|ZP_06301170.1| 5'-3' exonuclease [Staphylococcus aureus A8117]
 gi|282904021|ref|ZP_06311909.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905788|ref|ZP_06313643.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908757|ref|ZP_06316575.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911019|ref|ZP_06318821.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914229|ref|ZP_06322016.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919152|ref|ZP_06326887.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus C427]
 gi|282924336|ref|ZP_06332010.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus C101]
 gi|283958205|ref|ZP_06375656.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293501256|ref|ZP_06667107.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510218|ref|ZP_06668926.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus M809]
 gi|293526811|ref|ZP_06671495.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407189|ref|ZP_06816989.1| 5'-3' exonuclease [Staphylococcus aureus A8819]
 gi|295427950|ref|ZP_06820582.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275552|ref|ZP_06858059.1| 5'-3' exonuclease, putative [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297244613|ref|ZP_06928496.1| 5'-3' exonuclease [Staphylococcus aureus A8796]
 gi|297591082|ref|ZP_06949720.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|13701238|dbj|BAB42533.1| SA1273 [Staphylococcus aureus subsp. aureus N315]
 gi|14247211|dbj|BAB57602.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|82656571|emb|CAI80994.1| probable 5'-3' exonuclease [Staphylococcus aureus RF122]
 gi|147740996|gb|ABQ49294.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus JH9]
 gi|149946442|gb|ABR52378.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus JH1]
 gi|156721894|dbj|BAF78311.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253728854|gb|EES97583.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271963|gb|EEV04101.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275006|gb|EEV06493.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278923|gb|EEV09542.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281646|gb|EEV11783.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus E1410]
 gi|257284677|gb|EEV14797.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus M876]
 gi|257789476|gb|EEV27816.1| 5'-3' exonuclease [Staphylococcus aureus A9781]
 gi|257839878|gb|EEV64346.1| 5'-3' exonuclease [Staphylococcus aureus A9763]
 gi|257843527|gb|EEV67934.1| 5'-3' exonuclease [Staphylococcus aureus A9719]
 gi|257849937|gb|EEV73895.1| 5'-3' exonuclease [Staphylococcus aureus A9299]
 gi|257850267|gb|EEV74220.1| 5'-3' exonuclease [Staphylococcus aureus A8115]
 gi|257856971|gb|EEV79871.1| 5'-3' exonuclease [Staphylococcus aureus A6224]
 gi|257862991|gb|EEV85755.1| 5'-3' exonuclease [Staphylococcus aureus A5937]
 gi|262075353|gb|ACY11326.1| 5'-3' exonuclease, putative [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282313723|gb|EFB44116.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus C101]
 gi|282316962|gb|EFB47336.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus C427]
 gi|282322297|gb|EFB52621.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324714|gb|EFB55024.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327021|gb|EFB57316.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331080|gb|EFB60594.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595639|gb|EFC00603.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764932|gb|EFC05057.1| 5'-3' exonuclease [Staphylococcus aureus A8117]
 gi|283790354|gb|EFC29171.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817119|gb|ADC37606.1| DNA polymerase I [Staphylococcus aureus 04-02981]
 gi|290920369|gb|EFD97433.1| 5'-3' exonuclease family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096261|gb|EFE26522.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467162|gb|EFF09680.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus M809]
 gi|294967902|gb|EFG43931.1| 5'-3' exonuclease [Staphylococcus aureus A8819]
 gi|295128308|gb|EFG57942.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297178643|gb|EFH37889.1| 5'-3' exonuclease [Staphylococcus aureus A8796]
 gi|297575968|gb|EFH94684.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|302333051|gb|ADL23244.1| exonuclease [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312438157|gb|ADQ77228.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829832|emb|CBX34674.1| 5'-3' exonuclease, C-terminal SAM fold family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129152|gb|EFT85147.1| hypothetical protein CGSSa03_06911 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727070|gb|EGG63526.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus 21172]
          Length = 292

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------ALFEKMSFATTLNHILS 274


>gi|57650395|ref|YP_186324.1| 5'-3' exonuclease, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161192|ref|YP_494029.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195173|ref|YP_499974.1| hypothetical protein SAOUHSC_01454 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221562|ref|YP_001332384.1| hypothetical protein NWMN_1350 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509607|ref|YP_001575266.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140993|ref|ZP_03565486.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258451098|ref|ZP_05699133.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262048967|ref|ZP_06021846.1| hypothetical protein SAD30_1245 [Staphylococcus aureus D30]
 gi|262051616|ref|ZP_06023836.1| hypothetical protein SA930_1893 [Staphylococcus aureus 930918-3]
 gi|282921685|ref|ZP_06329402.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|284024439|ref|ZP_06378837.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           132]
 gi|294848403|ref|ZP_06789149.1| hypothetical protein SKAG_00465 [Staphylococcus aureus A9754]
 gi|304380978|ref|ZP_07363636.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284581|gb|AAW36675.1| 5'-3' exonuclease, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|87127166|gb|ABD21680.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202731|gb|ABD30541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374362|dbj|BAF67622.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368416|gb|ABX29387.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257861153|gb|EEV83966.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259160457|gb|EEW45481.1| hypothetical protein SA930_1893 [Staphylococcus aureus 930918-3]
 gi|259162899|gb|EEW47462.1| hypothetical protein SAD30_1245 [Staphylococcus aureus D30]
 gi|269940934|emb|CBI49318.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282593947|gb|EFB98936.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|294824429|gb|EFG40852.1| hypothetical protein SKAG_00465 [Staphylococcus aureus A9754]
 gi|302751270|gb|ADL65447.1| exonuclease [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340503|gb|EFM06439.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315197817|gb|EFU28151.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140388|gb|EFW32244.1| 5'-3' exonuclease, SAM fold protein [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320142685|gb|EFW34488.1| 5'-3' exonuclease, SAM fold protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329314117|gb|AEB88530.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus T0131]
 gi|329723214|gb|EGG59745.1| 5'-3' exonuclease, SAM domain protein [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 292

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGEPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------ALFEKMSFATTLNHILS 274


>gi|15617030|ref|NP_240243.1| DNA polymerase I [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|17366258|sp|P57506|EX53_BUCAI RecName: Full=5'-3' exonuclease
 gi|25331616|pir||A84980 DNA-directed DNA polymerase (EC 2.7.7.7) [imported] - Buchnera sp.
           (strain APS)
 gi|10039095|dbj|BAB13129.1| DNA polymerase I [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 286

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 149/284 (52%), Gaps = 10/284 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           K N + ++DGS ++Y ++YA   L     G P  AI G   ++  + +  +         
Sbjct: 5   KNNPVIIIDGSLYLYASYYAFCNLENTS-GKPCGAIYGMLKIIDNIFKKYKNLKK---II 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +IFD    TFRN+++ +YK NR  +P++L+ Q+  +    +  GI  + I G EADD+I 
Sbjct: 61  IIFDSSRKTFRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIG 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           + +Y  EK+G  + I+S DKD++QLV+    ++       I  E + +K+GI P++ +  
Sbjct: 121 SLSYQLEKQGEKILILSHDKDMLQLVTENINIFHKKNNCIITSEIIQEKYGIKPKEFIDF 180

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEY 236
            AL GD+ DNIPG+P IG KTA  L+ ++ N+ENI  N  +IK    R        +   
Sbjct: 181 LALMGDATDNIPGVPKIGIKTALFLINKFSNIENIYNNIEKIKSLPLRNAKNISIQLKNN 240

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
            E A LS KL  ++ D+PI I L+ +IL+           K   
Sbjct: 241 KERALLSYKLARIKLDIPIDIKLKDIILKKYCSKNTFQIFKNYF 284


>gi|21283058|ref|NP_646146.1| hypothetical protein MW1329 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486280|ref|YP_043501.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253732080|ref|ZP_04866245.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297207901|ref|ZP_06924334.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911986|ref|ZP_07129429.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204497|dbj|BAB95194.1| MW1329 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244723|emb|CAG43159.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253724178|gb|EES92907.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|296887475|gb|EFH26375.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886232|gb|EFK81434.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus TCH70]
 gi|329731352|gb|EGG67718.1| 5'-3' exonuclease, SAM domain protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 292

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  S  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------SLFEKMSFATTLNHILS 274


>gi|49483630|ref|YP_040854.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241759|emb|CAG40449.1| putative 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 292

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF + ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVSHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------ALFEKMSFATTLNHILS 274


>gi|303271985|ref|XP_003055354.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
 gi|226463328|gb|EEH60606.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
          Length = 1996

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 156/682 (22%), Positives = 256/682 (37%), Gaps = 123/682 (18%)

Query: 403  HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
             + P+ IA+S         F    +F    VH +        L     + ++        
Sbjct: 1320 DAPPVGIALSF-------PFNPLAVFYAPIVHGAGGGGATRGLP---WTRVRDVLSRSGV 1369

Query: 463  LKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVL---------------------DSGR 500
             K+  ++K     +   G ++     D+ + ++VL                     D  R
Sbjct: 1370 GKVTVDLKPQLRAM-GAGATIAAPVVDVKIAAWVLHPDEELLKYSSQTGWDALNAVDPDR 1428

Query: 501  SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRP 558
            +    A + +++      + +++          +D  +    +A       L L  L+R 
Sbjct: 1429 ARGPCAGMLERFAGDVDADAIRAASKWRGPRATADGVNAGGANAAFAVASALSLDALVRA 1488

Query: 559  KLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            KL        L      ++ P++ V++ ME  G+      L +     +K +  +E    
Sbjct: 1489 KLADPRAPSGLEDALRAIEMPLVPVLASMERAGVAFAPATLSRQLRRATKRVREIETEAV 1548

Query: 615  D------------LSGEKFNLSSPKQLGDILFT----KLKFPSGAKTK----TGQWKTTA 654
                         ++  +FNL+S   +  +LF      L        K     G+  T  
Sbjct: 1549 AVVATHFACRHPGMAPPEFNLASSDDVARVLFDAPPAGLGAEPPRGAKPTAARGRRSTRQ 1608

Query: 655  QDLEQI-NCGDNPI---IKNILEWRQLSKIKSTYADS--LPN----------HINKRTQR 698
             DL  +      PI    K +LE R L K+     +   L                 T R
Sbjct: 1609 DDLLALVREQGGPIAAFPKLVLEHRSLRKLLDEANEFGRLAKSELGGDAAAAADESVTIR 1668

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIK--------------------------TDLGQK 732
            +       +T TGRLA  +PNLQ +P                             +    
Sbjct: 1669 LRGVIHQTNTGTGRLAMEDPNLQCVPRPREFALSRAYPERLSASGRVSPGTDAGAEETLA 1728

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE-NSLDIHRMVAAEIFG--VN 789
            IR AF +P  KKLI+ DY QIELR++AH++    L       S+D  +++AA   G    
Sbjct: 1729 IRNAFRAPRGKKLIAFDYKQIELRVIAHLSCDRGLIAALCVRSVDPFKVIAARWKGDGTT 1788

Query: 790  IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
             + VS + R  AK + + I YG    R    + +   EA   I+ +    PG+  +    
Sbjct: 1789 PKNVSDEDRAKAKELCYGICYGAGVGRYQQAMGVTELEARAAIEDFKRSLPGVERWKSAL 1848

Query: 850  KNFVRQNG--YVETIFGRRIHYDEINSPKSS--IRNINERAAINAPIQGSAADITRRAMI 905
                R+    +V TI GR      +N+  +   IR  +ER AIN   QGSAADI +R MI
Sbjct: 1849 VKDARERTPPHVRTIAGRCRFLPSLNATGAGGEIRAADERKAINTACQGSAADIVKRVMI 1908

Query: 906  SVHKSLEDHK--------------LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
             +H  L                   A +M+LQ+HDEL+FEV E ++  A + I   ME+A
Sbjct: 1909 ELHAKLTSGGGADDDDEWAPLREVDACEMVLQVHDELLFEVDERKVDVAVRAIRGVMERA 1968

Query: 952  CLPKINLRVPLKVNIKVSNNWQ 973
                 +++VPL V + V ++W 
Sbjct: 1969 -REVHDMKVPLPVRVSVGDDWG 1989


>gi|308805154|ref|XP_003079889.1| DNA polymerase type I (ISS) [Ostreococcus tauri]
 gi|116058346|emb|CAL53535.1| DNA polymerase type I (ISS) [Ostreococcus tauri]
          Length = 322

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/287 (36%), Positives = 148/287 (51%), Gaps = 26/287 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
           ++  HL LVDG SF++RA+Y               G   + +  + + +  LL     E 
Sbjct: 12  ERTEHLILVDGLSFVFRAYYGWNARGNGEGLTNASGEDTSVLYSYAHTICSLL-----EM 66

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
             +H AV  D    TFR+E++ DYKANRP  PE LL  +P V    +  G+P + + G E
Sbjct: 67  RPTHLAVCMDAKGKTFRHEMFVDYKANRPPTPEPLLEVIPKVEQLVRDMGVPVLRLSGVE 126

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIK 170
           ADDII T +  A   GF V+I S DKD  QL+ P T +    K  K         E    
Sbjct: 127 ADDIIGTVSRRASDAGFRVSICSPDKDFYQLLGPRTSMLKPNKSNKGDPFVPFTEEDFRA 186

Query: 171 KWG--IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
                I P + +   AL GDS DNIPG+ G+G KTA  LL EYG ++  L NAS++K K+
Sbjct: 187 MHNHVIEPAQFIDYLALVGDSSDNIPGVEGVGPKTALALLGEYGTIDAALANASKVKGKR 246

Query: 229 RRENIL--EYAETARLSRKLVMLRTDVPIT------IPLEHLILEDC 267
            RE++L  + A +A LSRKLV +R ++ +       +PLE L +   
Sbjct: 247 ARESLLSEKGAASAALSRKLVEIRQNLTVPSLNEPLLPLESLAVRPP 293


>gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511]
 gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511]
          Length = 730

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 115/519 (22%), Positives = 222/519 (42%), Gaps = 75/519 (14%)

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV-VSQMEITGIQ 589
           D I    +  +A  +++  L++  +L   +   + +        P   V ++++E  GI 
Sbjct: 152 DWIPLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPSAIVALARIESNGIY 211

Query: 590 IDQDLLKQVSAEISK----------------NLLSLEENIYDLSGEK------------- 620
              D ++ ++ + ++                 L      +Y+   E+             
Sbjct: 212 AQTDYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVEEMAVPPAKRDDDIA 271

Query: 621 -----------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWK----------------TT 653
                      FN +S    G +L+  +        +  +                   T
Sbjct: 272 KLRNKYKNKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWEDYKT 331

Query: 654 AQDLEQINCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            +          P        +LE   +   K+ +   L N I+ +  RVH  ++   T 
Sbjct: 332 DKKALNYIVDHFPDQKVFASLLLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFNATGTE 391

Query: 710 TGRLASLEPNLQNIPIKT------DLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIA 762
           T RL+S  PN+Q +P KT      D    I+R F  +     L+  DYS +E+RILA  A
Sbjct: 392 TTRLSSNNPNMQQLPAKTSNPKRFDYQYPIKRMFQTAFENGALLQLDYSSLEMRILALAA 451

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               + Q F +  D+H+  A+ ++G+ ++KV  + R+ AK +NF I YG +PF  A +  
Sbjct: 452 GDEAMTQAFFDGADLHKETASIVWGMPVDKVPAEFRKKAKAVNFGIAYGETPFSFAPKHD 511

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +   EA D  +RYF   P I  +I++T     ++G+V+T+ G R    +  S    I+N 
Sbjct: 512 MSVEEAEDIFQRYFANKPNIKTFIDETHREALRDGFVDTLQGHRRLIRDAFSKDKQIQNG 571

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             R ++N  IQG+ A  T  ++I + + ++D+ + +K++L +HD +V + P EEI   ++
Sbjct: 572 ALRKSVNTKIQGTGAYCTNMSLIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEIEIMAR 631

Query: 943 IIVHSMEKACLPKINL-------RVPLKVNIKVSNNWQE 974
           +    ME   +  +++       + P++ +I++  N+ +
Sbjct: 632 VCKTIMENLPIDFLSIEWKGEKTKYPIEADIEIGTNYND 670


>gi|258447392|ref|ZP_05695536.1| 5'-3' exonuclease [Staphylococcus aureus A6300]
 gi|257853583|gb|EEV76542.1| 5'-3' exonuclease [Staphylococcus aureus A6300]
          Length = 283

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------ALFEKMSFATTLNHILS 274


>gi|323464463|gb|ADX76616.1| 5'-3' exonuclease, putative [Staphylococcus pseudintermedius ED99]
          Length = 293

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 153/288 (53%), Gaps = 15/288 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + L L+DG + ++R FYAT       R  +G P N   GF   ++  +++       +H 
Sbjct: 3   HKLLLIDGMALLFRHFYATSVHKNFMRNTNGTPTNGTQGFVRHVYSAIRDVE----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A+ +D    TFRN+++  YK NRP  PE L+PQ   V+  +++ G   I ++ +EADD+I
Sbjct: 59  AICWDMGKATFRNDMFDGYKQNRPAPPEELIPQFDHVQHISESLGFLNIGVENYEADDVI 118

Query: 122 ATYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
            T T+  A+     V II+ D+DL+Q V     ++   K      K D      ++ + P
Sbjct: 119 GTLTHAYAQSPDHEVYIITGDRDLLQCVRDNVYVWLIKKGFTEYSKYDRARFELEYQLQP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++A  GD+ D  PG+ GIG KTA  L+Q+YG++E ++ N S++    +++ I + 
Sbjct: 179 PQLIEVKAFMGDTADGYPGVKGIGEKTAIKLVQQYGSVEEVIANVSQLTPG-QQKKIAQN 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E  RLS++L  +  +VP+   ++ L  +  +   L   L  L+  +L
Sbjct: 238 MENLRLSKQLATIELNVPL--SIDTLFEQMAHHVELNHVLAVLDEHEL 283


>gi|283470652|emb|CAQ49863.1| probable 5'-3' exonuclease [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 292

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFTAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------ALFEKMSFATTLNHILS 274


>gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1034

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 110/333 (33%), Positives = 162/333 (48%), Gaps = 28/333 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   ++ + S +   L +  I+ +  R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 700  IAALCEVCSINSLISNFILPLQDGEISGKNGRIHCSLNI-NTETGRLSARRPNLQNQPAL 758

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AFI+ P   LI ADY Q+ELRILAH+A    +   F+   D H   A  ++
Sbjct: 759  EKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMY 818

Query: 787  GVNIEKVSP--------------------------QMRRHAKTINFSIIYGISPFRLATQ 820
                E V                              RR AK +NFSI YG +   LA  
Sbjct: 819  PHIREAVEKREVLLEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARD 878

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA + ++R++     +  + EK K       YV T+ GR   +  ++   +S R
Sbjct: 879  WKVSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQR 938

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               ERAAIN P+QGSAAD+   AM+ + ++    +L  K+LLQ+HDE++ E P E    A
Sbjct: 939  GHIERAAINTPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVA 998

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  MEK    K  L V L V+ K + NW 
Sbjct: 999  KAIVVECMEKPFDGKNILSVDLAVDAKCAQNWY 1031



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 135/394 (34%), Gaps = 69/394 (17%)

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           VV    +   K +    E +   +   +  +  +D++++ +           +L+   + 
Sbjct: 184 VVQSNGSLSMKPLEDREEANFIFSRDRAADAIENDESNERSIIPATGTHAFSQLEARRKL 243

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASF---KIITDTMDAF------HSKPIAIAIS 412
               +    + +    ++ V+KL T               +D        H + I  +I 
Sbjct: 244 SKIYEKVLIVDDIYVAKKIVRKLTTQYKHLIHACDTEVANIDVKRETPVDHGEIICFSIY 303

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           +  + D  + K       L      D  G++ L +        FFE+    K+ HN  +D
Sbjct: 304 SGPEADFGNGKSCIWVDVL------DGGGRDLLVE-----FAPFFEDPSIQKVWHNYSFD 352

Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASIAQK------WLSYTRKEILK 522
             V+  Y + + GF  D M M+ + DS R     + + ++ +             +E++ 
Sbjct: 353 NHVIENYDLKVSGFHADTMHMARLWDSSRRAVGGYSLEALTRDSKVMSGAHMSNGEELIG 412

Query: 523 S-------RKSSIPIDKISDSQVQ----------------EHAIENSNVILQLWLLLRPK 559
                    K  +  D      +                  ++  +S   L+L+  ++ K
Sbjct: 413 KVSMKTIFGKKKLKKDGTEGKIITIAPVEVLQREDRKPWISYSALDSMSTLKLYESMKNK 472

Query: 560 LIVEK----------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           L+ ++          +   Y++  +P  +++ QME  G+ +D+  L +V           
Sbjct: 473 LLDKEWLLDGARKGCMFDFYQKYWRPFGELLVQMETEGMLVDRAYLSKVEKVAKAEEQVA 532

Query: 610 EENIYDLSGEK------FNLSSPKQLGDILFTKL 637
                + + +        N+ S  QL  +LF  +
Sbjct: 533 ANRFRNWASKHCPDAKYMNVGSDTQLRQLLFGGV 566


>gi|58583261|ref|YP_202277.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625095|ref|YP_452467.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575436|ref|YP_001912365.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427855|gb|AAW76892.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369035|dbj|BAE70193.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519888|gb|ACD57833.1| exodeoxyribonuclease IX [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 328

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 141/308 (45%), Gaps = 11/308 (3%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +   L+LVD S +++RA+++ P   +   G   NA+ GF   L  +L+    +    H  
Sbjct: 17  RPTPLYLVDASLYVFRAWHSIPDEFQDAQGWSTNAVHGFARFLLDVLERENPQ----HIT 72

Query: 63  VIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           + FD      FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I
Sbjct: 73  IAFDEALDSCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLI 132

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            +  +     G    I+S DKDL QL+      +D  + ++  ++ V  + G+   ++  
Sbjct: 133 GSALHSVRAHGLRGVIVSADKDLSQLLLEHDEQWDYARNQRWSMDGVKARHGVHAHQIAD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILE 235
             AL GD+IDNIPG+ GIG K+AA+LL  +G+L+ +L     I   + R        + E
Sbjct: 193 YLALCGDAIDNIPGVTGIGAKSAAVLLAHFGSLDALLERIDEIPFLRLRGAAQMAVRLRE 252

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             E A L R+L  +  D P+ +          +   L    ++L F  L  R        
Sbjct: 253 QREHALLWRQLTTIALDAPLALTETGFTRAHADAGMLTGLCESLRFGPLTRRRLLAASTG 312

Query: 296 AANIEPVV 303
            A   P V
Sbjct: 313 VAAPFPSV 320


>gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100]
          Length = 702

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 116/519 (22%), Positives = 224/519 (43%), Gaps = 75/519 (14%)

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV-VSQMEITGIQ 589
           D I    +  +A  +++  L++  +L   +   + +        P   V ++++E  GI 
Sbjct: 124 DWIPLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPSAIVALARIESNGIY 183

Query: 590 IDQDLLKQVSAEISK----------------NLLSLEENIYDLSGEK------------- 620
              D ++ ++ + ++                 L      +Y+   E+             
Sbjct: 184 AQTDYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVEEMAIPPAKRDKDIA 243

Query: 621 -----------FNLSSPKQLGDILFTKLKF--------------PSGAKTKTGQWKTTAQ 655
                      FN +S    G +L+  +                  G       W+    
Sbjct: 244 KLRDKYKKKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWEDYKT 303

Query: 656 DLEQINC------GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
           D + +N               +LE   +   K+ +   L N I+ +  RVH  ++   T 
Sbjct: 304 DKKALNYIVDHFPDQKAFASLLLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFNATGTE 363

Query: 710 TGRLASLEPNLQNIPIKT------DLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIA 762
           T RL+S  PN+Q +P KT      D    I+R F  +     L+  DYS +E+RILA  A
Sbjct: 364 TTRLSSNNPNMQQLPAKTSDPKRFDYQYPIKRMFQTAFENGALLQLDYSSLEMRILALAA 423

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               + Q F +  D+H+  A+ ++G+ ++KV  + R+ AK +NF I YG +PF  A +  
Sbjct: 424 GDEAMTQAFFDGADLHKETASIVWGMPVDKVPAEFRKKAKAVNFGIAYGETPFSFAPKHD 483

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           +   EA D  +RYF   P I  +I++T     ++G+V+T+ G R    +  S    I+N 
Sbjct: 484 MSVEEAEDIFQRYFANKPNIKTFIDETHREALRDGFVDTLQGHRRLIRDAFSKDKQIQNG 543

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             R ++N  IQG+ A  T  ++I + + ++D+ + +K++L +HD +V + P EE+   ++
Sbjct: 544 ALRKSVNTKIQGTGAYCTNMSLIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEVEIMAR 603

Query: 943 IIVHSMEKACLPKINL-------RVPLKVNIKVSNNWQE 974
           +    ME   +  +++       + P++ +I++  N+ +
Sbjct: 604 VCKTIMENLPIDFLSIEWKGEKTKYPIEADIEIGTNYND 642


>gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group]
          Length = 1033

 Score =  258 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   + K+ S +   L  + I+ +  R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 699  IAALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPAL 757

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR AF++ P   LI ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 758  EKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMY 817

Query: 787  GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
                + V  +                           RR AK +NFSI YG +   L+  
Sbjct: 818  QHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWD 877

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA D +K ++     +  + +K K F  +   V T+ GR   +  +       +
Sbjct: 878  WKVSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQK 937

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P E    A
Sbjct: 938  GHVERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEA 997

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K       L+V L V+ K + +W 
Sbjct: 998  KTIVVECMSKPFYGTNILKVDLAVDAKYAKSWY 1030



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 111/323 (34%), Gaps = 62/323 (19%)

Query: 370 KIVNTKDIQQWVQKLETIGSASF----KIITDTMDAFHSKPIA----IAISTLDQKDDTS 421
            +V+  +  + V KL T     F          +D     P+     I  S      D  
Sbjct: 259 LVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDVKEETPVGHGEVICFSICSGNSD-- 316

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                   D     +          +++L     FFE+    K+ HN  +D  V+   GI
Sbjct: 317 -----GEADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPFIKKVWHNYSFDIHVIENCGI 371

Query: 482 SMRGFE-DIMLMSYVLDSGRS---SHDIASIAQKW--LSYTRKEILKSRK---------- 525
            + GF  D M ++ + DS R     + +  +   +  +    K+I K+ K          
Sbjct: 372 KVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDYRVMDAVLKDIPKTGKVSMKTIFGRK 431

Query: 526 ---------SSIPIDKISDSQVQE------HAIENSNVILQLWLLLRPKLIVEK------ 564
                     +I I+ +   Q ++      ++  +S   L+L+  L+ KL  ++      
Sbjct: 432 KVRKDGSEGKTISIEPVEKLQREDRELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDC 491

Query: 565 ----LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
               +   YE   +P   ++ +ME  G+ +D+  L ++            +     + + 
Sbjct: 492 PRGTMYDFYEEYWRPFGALLVKMETEGVLVDRAYLSEIEKAAVTERELAADKFRKWASKH 551

Query: 621 ------FNLSSPKQLGDILFTKL 637
                  N++S  Q+  + F  +
Sbjct: 552 CPDAKYMNVNSDNQIRQLFFGGI 574


>gi|308808137|ref|XP_003081379.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
 gi|116059841|emb|CAL55548.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
          Length = 1489

 Score =  258 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 211/549 (38%), Gaps = 62/549 (11%)

Query: 485  GFEDIMLMSYVLDS----------GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
               D+ + +++L                H +     + L       L S KS +    + 
Sbjct: 916  PCVDVRIAAWLLRPSAPEVQSSSRDDLVHGMDP--TEPLMSLFSAELDSAKSGVDTACLL 973

Query: 535  DSQV---QEHAIENSNVILQLW---LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              +     EH    S  +   +     L  +   + L+    R++ P +  +  ME   +
Sbjct: 974  LERKGRSYEHLKPLSRAVASCFLMGRFLWEECEAKDLIRALIRVEMPFVAPIVAMETVKV 1033

Query: 589  QIDQDLLKQVSAEISKNLLSLEENIYDL--------SGEKFNLSSPKQLGDILFTKLKFP 640
              D   LK+  A +   L  LEE             +  +   +    L   L+  LK  
Sbjct: 1034 PFDPRRLKEEIAAMDDRLKKLEEYAKKQKWLDPLHPANLRRAFTDNAYLVKCLYEHLKLT 1093

Query: 641  SGAKTK---TGQWKTTAQDL---------EQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
              A ++   T  W + A++          +      +     ILE R + K + T+AD L
Sbjct: 1094 PPAGSELAFTKDWVSNAKECTVSTKTTYEKVHEQSGHMFPLLILEHRSVFK-RLTFADVL 1152

Query: 689  PNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ----------KIRRAF 737
                 +    R+       +   GRL  +EPN  ++                   +R AF
Sbjct: 1153 LGMYGESMDSRIRYSIHQTNHDCGRLTHIEPNFHSMAHDMKCVDAFDGLDAPVISVRSAF 1212

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN------SLDIHRMVAAEIFGVNIE 791
              P  +  +  DYS +ELR++AH +    L  + +N        D   M+A +  GV + 
Sbjct: 1213 TPPADRVFLRVDYSHLELRVMAHFSGDQTLIALLQNPEPVNAHDDPFTMLACKWRGVPLN 1272

Query: 792  KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
             VS   R+  K + + I+YG    RLA +LR+   +A   +       P +  + +    
Sbjct: 1273 AVSVDERQRVKNLVYGILYGSGVKRLARELRLSDEKAKILVDELKSMLPTLMNWRDDVVA 1332

Query: 852  FVRQNG---YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
               +      V TI  R  ++ E+ S     R+  ER A+N   QGSAADI + A++ V 
Sbjct: 1333 RAIEEKPIPRVTTISSRHRYFPELLSRSGDERSAAERQAVNTVCQGSAADIFKTAVVLVM 1392

Query: 909  KSLEDHKL--ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
            ++L    L    +++L +HDE VFEV       A++I+ ++ME       NL VPL V  
Sbjct: 1393 ETLRAKHLLDRCQLVLTVHDEAVFEVNASVAKAAARIVRNTMESVA-GVFNLSVPLPVKA 1451

Query: 967  KVSNNWQEE 975
            ++  +  + 
Sbjct: 1452 QIGPSLGDA 1460


>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
          Length = 976

 Score =  258 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 160/333 (48%), Gaps = 28/333 (8%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I  + E   + K+ S +   L  + I+ +  R+H   ++ +T TGRL++  PNLQN P+ 
Sbjct: 642 IAALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPVL 700

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR AF++ P   LI ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 701 EKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMY 760

Query: 787 GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
               + V  +                           RR AK +NFSI YG +   L+  
Sbjct: 761 QHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWD 820

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            ++   EA D +K ++     +  + +K K F  +   V T+ GR   +  +       +
Sbjct: 821 WKVSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQK 880

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P E    A
Sbjct: 881 GHVERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEA 940

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             I+V  M K       L+V L V+ K + +W 
Sbjct: 941 KTIVVECMSKPFYGTNILKVDLAVDAKYAKSWY 973



 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 138/414 (33%), Gaps = 63/414 (15%)

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
            F+ + N +      D +  E    D  T E+    +         IK SQ    ++   
Sbjct: 111 PFSVVNNDIKPLNMLDGSKEEIPWHDSVTMESSLPKVSKSEKTWWLIKLSQTKRSTNALQ 170

Query: 340 KINSEQTPQKLFLERLQKLSQYPINND-SYTKIVNTKDIQQWVQKLETIGSASF----KI 394
              +   P K  L    K ++  +        +V+  +  + V KL T     F      
Sbjct: 171 GKVTPNFPDKASLSTESKNARKLLATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDT 230

Query: 395 ITDTMDAFHSKPIA----IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               +D     P+     I  S      D          D     +          +++L
Sbjct: 231 EVANIDVKEETPVGHGEVICFSICSGNSD-------GEADFGNGKTCIWVDVLDGGRDVL 283

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIA 506
                FFE+    K+ HN  +D  V+   GI + GF  D M ++ + DS R     + + 
Sbjct: 284 MEFAPFFEDPFIKKVWHNYSFDIHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSLE 343

Query: 507 SIAQKW--LSYTRKEILKSRK-------------------SSIPIDKISDSQVQE----- 540
            +   +  +    K+I K+ K                    +I I+ +   Q ++     
Sbjct: 344 GLTNDYRVMDAVLKDIPKTGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDRELWI 403

Query: 541 -HAIENSNVILQLWLLLRPKLIVEK----------LLHVYERLDKPMIDVVSQMEITGIQ 589
            ++  +S   L+L+  L+ KL  ++          +   YE   +P   ++ +ME  G+ 
Sbjct: 404 CYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYWRPFGALLVKMETEGVL 463

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEK------FNLSSPKQLGDILFTKL 637
           +D+  L ++            +     + +        N++S  Q+  + F  +
Sbjct: 464 VDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGI 517


>gi|228476126|ref|ZP_04060834.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|314936423|ref|ZP_07843770.1| 5'-3' exonuclease family protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269949|gb|EEK11429.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|313655042|gb|EFS18787.1| 5'-3' exonuclease family protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 294

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 152/297 (51%), Gaps = 30/297 (10%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M +   + LVDG + ++R FYAT L  +      G+P N I GF   ++  +++ +    
Sbjct: 1   MTQ--RVLLVDGMALLFRHFYATSLHKQFMYNSKGIPTNGIQGFVRHIFTAIKDIK---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH A+ +D    TFRN++Y  YK NRP  P+ L+PQ   V+  ++ FG   I +  +EA
Sbjct: 55  PSHVAICWDMGQATFRNDMYTSYKQNRPAPPDELIPQFDYVKDISEQFGFVNIGVANYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I T   I  K+   V I++ D+D++Q ++    ++   K         +    +++ 
Sbjct: 115 DDVIGTLAKIYSKDN-EVHIVTGDRDILQCINEQVEVWLIRKGFNIYHHYTLNRFNEEYA 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P +++ ++A  GDS D  PG+ GIG KTA  L+Q YG++EN+L N   +    +++ I
Sbjct: 174 LHPLQLIDIKAFMGDSADGYPGVKGIGEKTAIKLIQSYGSVENVLDNIESLTPN-QQKKI 232

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
               E   LS++L  + TDVPI                  +  + +++T  +N + +
Sbjct: 233 AIDKENLILSKQLAKIYTDVPIDTT---------------ALYEEMKYTHSLNHILS 274


>gi|289663503|ref|ZP_06485084.1| exodeoxyribonuclease IX [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 328

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 138/297 (46%), Gaps = 11/297 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+    +    H  + FD
Sbjct: 21  LYLVDASLYVFRAWHSIPDEFQDAQGWPTNAVHGFARFLLDLLEREDPQ----HITIAFD 76

Query: 67  -YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                 FR+ IYP YK NR   P+ L  Q    +    A G+  +  + +EADD+I +  
Sbjct: 77  EALDSCFRHAIYPAYKGNRTPAPDALRRQFAHCKALCAALGLSVLAHRDYEADDLIGSAL 136

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           +     G    I+S DKDL QL+      +D  + ++ D+  V  + G+   ++    AL
Sbjct: 137 HSVRAHGVRGVIVSADKDLSQLLLEHDEQWDYARNQRWDMHGVKARHGVHAHQIADYLAL 196

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEYAET 239
            GD+IDNIPG+ GIG K+AA+LL  +G+L  +L     I   + R        + E  E 
Sbjct: 197 CGDAIDNIPGVTGIGAKSAAVLLAHFGSLNALLERIDEIPFLRLRGAAQMAVRLREQREH 256

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
           A L R+L  +  D P+ +          +   L    ++L F  L  R        A
Sbjct: 257 ALLWRQLTTIALDAPLALTDTGFTRAHADADMLTGLCESLRFGPLTRRRLLAASTGA 313


>gi|298528005|ref|ZP_07015409.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511657|gb|EFI35559.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 914

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 113/500 (22%), Positives = 220/500 (44%), Gaps = 39/500 (7%)

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----- 563
             K L     +I  S    +    +    +  +A  ++ V   ++     K+  +     
Sbjct: 418 VLKKLPPEILDIPGSVARKVNYGDLPREILLPYAAMDAMVTRVIFTEQYRKMEEDYTQIK 477

Query: 564 ---------KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
                     L      +  P+   +S+ME  GI+ID++ L+   A +   +  L++ I+
Sbjct: 478 RLEIAEKTTDLAKTLRFMTMPLAPKISEMEYQGIRIDREKLEDFIARVDAKIPELKDRIF 537

Query: 615 DLSGEKFNLSSPK-QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNIL 672
              G K NLSS    L  +LF + ++     TKTG + T    +E +    ++  I+++L
Sbjct: 538 SSIGRKINLSSSSGDLKRVLFKEKRYEPVKYTKTGDFSTDKNSMEVLYEKNEDEFIRDLL 597

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
             R++ K++ TY  +    I +   R+H   +   T T RL++ +          ++   
Sbjct: 598 ILRRVEKVRETYFINWRGEI-EYDGRLHFSLNQHGTATYRLSANKGLQNAPAYLKEIDLN 656

Query: 733 IRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           ++  F+       +   D +  ELR+L   +K   L + F   LDIH + AA+I     E
Sbjct: 657 VKSLFLPDSEEYDIFDLDIANAELRVLCGYSKDETLIEAFNQGLDIHSLTAAKISDFTYE 716

Query: 792 KV-------SPQM---RRHAKTINFSIIYGISPFRLATQL------RIPRSEAADYIKRY 835
           ++       + +    R+  K INF  +Y +    L+ QL      ++   EA  Y+ ++
Sbjct: 717 EIKAAKEDKTSEQHKLRQLGKKINFGTVYSMGATSLSKQLWAESRIKVSEDEAKQYLNKF 776

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
           F  +P + EY+EKT+ F R + +V T  GRR  +  +       +    R AIN  IQ +
Sbjct: 777 FEEYPKVKEYMEKTRAFARAHRFVYTYTGRRRRFPMLGVDNHQ-KFKAFRQAINCRIQTT 835

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           +ADI    ++ +  +++   L  ++LL +HD ++F++P++     ++++   + +    K
Sbjct: 836 SADIVNTNLVDLDDAIK--PLGGRVLLTVHDSILFQLPKDTAG-VTELLDQVITENTKNK 892

Query: 956 IN-LRVPLKVNIKVSNNWQE 974
              L V  K ++    N+ E
Sbjct: 893 FPWLPVEWKYDVGKGPNYGE 912



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 111/287 (38%), Gaps = 29/287 (10%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET----------IGSASFKIITDT 398
           +  +++   +    INN  Y  +   +  ++ +  LE               S    T +
Sbjct: 157 QADVKKAAAIVDGTINNLDYQ-LETPETFEEIMSALEKAREATRAGTMKKLVSVDTETTS 215

Query: 399 MDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           ++ +    K IAI++S    +    +           H    +  K     ++LS L++ 
Sbjct: 216 LEPYRLEEKMIAISLSWKKGQGLAFY--------FDHHEHGLNKEKQ---DQVLSKLEEV 264

Query: 457 FENEHFLKIGHNIKYDKLVL-HRYGISMRGFE-DIMLMSYVLDSG-RSSHDIASIAQKWL 513
            + E+ +    N K+D   L +RYG+ +  F+ D+ML+ ++LD   ++ + + ++ + ++
Sbjct: 265 LDPEYTVTCAANAKFDYKWLNYRYGLDIPFFDFDVMLLEHLLDEDKKNEYGLKNLTRDYI 324

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER-- 571
                   +  K+   I    D + +E   +        W     +   E L     +  
Sbjct: 325 PELAGYDEELEKALADIQNKFDKEAKEKHEQALQDYFTKWQEKTDEQRKELLKDWVRQRY 384

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +D P I+ + +++       + + K  +  + K L  L   I D+ G
Sbjct: 385 IDLPEIEGLEKIKTVQNGRKKAVSKAYTKSLFKVLKKLPPEILDIPG 431


>gi|282927966|ref|ZP_06335575.1| 5'-3' exonuclease [Staphylococcus aureus A10102]
 gi|282590263|gb|EFB95343.1| 5'-3' exonuclease [Staphylococcus aureus A10102]
          Length = 292

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFDGYKQNRFAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------ALFEKMSFATTLNHILS 274


>gi|21672683|ref|NP_660750.1| DNA polymerase I [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008437|sp|Q8K9D0|EX53_BUCAP RecName: Full=5'-3' exonuclease
 gi|21623322|gb|AAM67961.1| DNA polymerase I 3'-5' exo domain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 287

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 153/288 (53%), Gaps = 10/288 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K+  + +VDGS ++YR+++     +   +  P  AI G    +  +L    K   +   
Sbjct: 4   TKKKPIIIVDGSLYLYRSYFTFQNFNSNEE-NPSGAIYGMLKTIQNILN---KNYNSKKI 59

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            +IFD     FRN I+ +YK+NR  +P  L  Q+  +    +  GI  + I G EADDII
Sbjct: 60  IIIFDSSKKNFRNTIFKEYKSNRSAMPNKLYVQIQPLFKILEEIGIKTLSILGIEADDII 119

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            +  Y  E++G  V I+S DKD++QL++    + +  K   +  E + +K+GI P++ + 
Sbjct: 120 GSLAYKLEQKGEQVLIVSHDKDMIQLITDNINVLNISKNSILTPEKIQEKYGIYPKEFID 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILE 235
           L AL GDS DNIPG+P IG KTA  LL+++ N++NI  N  +I+       K     +  
Sbjct: 180 LLALMGDSSDNIPGVPKIGIKTALFLLKKFSNIKNIYNNIEKIQSLPFRNAKNAAIQLKN 239

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           Y +TA LS +L  ++ DVPI I  E + L+     +L + ++   F +
Sbjct: 240 YKKTAFLSYQLAKIKLDVPINITSEEITLKKTCFKKLSNLIRWYSFNE 287


>gi|319892434|ref|YP_004149309.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162130|gb|ADV05673.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 293

 Score =  257 bits (656), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 153/288 (53%), Gaps = 15/288 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + L L+DG + ++R FYAT       R  +G P N   GF   ++  +++       +H 
Sbjct: 3   HKLLLIDGMALLFRHFYATSVHKNFMRNTNGTPTNGTQGFVRHVYSAIRDVE----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A+ +D    TFRN+++  YK NRP  PE L+PQ   V+  +++ G   I ++ +EADD+I
Sbjct: 59  AICWDMGKATFRNDMFDGYKQNRPAPPEELIPQFDHVQHISESLGFLNIGVENYEADDVI 118

Query: 122 ATYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
            T T+  A+     V II+ D+DL+Q V     ++   K      K D      ++ + P
Sbjct: 119 GTLTHAYAQSPDHEVYIITGDRDLLQCVRDNVYVWLIKKGFTEYSKYDRARFELEYQLQP 178

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +++ ++A  GD+ D  PG+ GIG KTA  L+Q+YG++E ++ N S++    +++ I + 
Sbjct: 179 PQLIEVKAFMGDTADGYPGVKGIGEKTAIKLVQQYGSVEEVIANVSQLTPG-QQKKIAQD 237

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            E  RLS++L  +  +VP+   ++ L  +  +   L   L  L+  +L
Sbjct: 238 MENLRLSKQLATIELNVPL--SIDTLFEQMAHHVELNHVLAVLDEHEL 283


>gi|283770512|ref|ZP_06343404.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|283460659|gb|EFC07749.1| 5'-3' exonuclease [Staphylococcus aureus subsp. aureus H19]
          Length = 292

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R FYAT L  +      G+P N I GF   ++  +   R     +H 
Sbjct: 3   NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIR----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I ++ +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDLFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ DKDL+Q ++    ++   K      +  +     ++ + P+
Sbjct: 119 GTLAQQYSTDN-DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNVEYALEPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+Y ++EN++ N   +    +R  I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAG-QRNKINDNL 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +   LS++L  + T VPI                  +  + + F   +N + +
Sbjct: 237 DELYLSKRLAEIHTQVPIDSE---------------ALFEKMSFATTLNHILS 274


>gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group]
          Length = 1033

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 160/333 (48%), Gaps = 28/333 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   + K+ S +   L  + I+ +  R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 699  IAALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPAL 757

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++ P   LI ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 758  EKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMY 817

Query: 787  GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
                + V  +                           RR AK +NFSI YG +   L+  
Sbjct: 818  QHVRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWD 877

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA D +K ++     +  + +K K F  +   V T+ GR   +  +       +
Sbjct: 878  WKVEVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQK 937

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P E    A
Sbjct: 938  GHVERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEA 997

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K       L+V L V+ K + +W 
Sbjct: 998  KTIVVECMSKPFYGTNILKVDLAVDAKYAKSWY 1030



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 110/323 (34%), Gaps = 62/323 (19%)

Query: 370 KIVNTKDIQQWVQKLETIGSASF----KIITDTMDAFHSKPIA----IAISTLDQKDDTS 421
            +V+  +  + V KL T     F          +D     P+     I  S      D  
Sbjct: 259 LVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDVKEETPVGHGEVICFSICSGNSD-- 316

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                   D     +          +++L     FFE+    K+ HN  +D  V+   GI
Sbjct: 317 -----GEADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSHVIENCGI 371

Query: 482 SMRGFE-DIMLMSYVLDSGRS---SHDIASIAQKW--LSYTRKEILKSRK---------- 525
            + GF  D M ++ + DS R     + +  +      +    K+I K+ K          
Sbjct: 372 KVAGFHADTMHLARLWDSSRRTDGGYSLEGLTNDHRVMDAVVKDIPKTGKVSMKTIFGRK 431

Query: 526 ---------SSIPIDKISDSQVQE------HAIENSNVILQLWLLLRPKLIVEK------ 564
                     +I I+ +   Q ++      ++  +S   L+L+  L+ KL  ++      
Sbjct: 432 KVRKDGSEGKTISIEPVEKLQREDRELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDC 491

Query: 565 ----LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
               +   YE   +P   ++ +ME  G+ +D+  L ++            +     + + 
Sbjct: 492 PRGTMYDFYEEYWRPFGALLVKMETEGVLVDRAYLSEIEKAAVTERELAADKFRKWASKH 551

Query: 621 ------FNLSSPKQLGDILFTKL 637
                  N++S  Q+  + F  +
Sbjct: 552 CPDAKYMNVNSDNQIRQLFFGGI 574


>gi|194364475|ref|YP_002027085.1| 5'-3' exonuclease [Stenotrophomonas maltophilia R551-3]
 gi|194347279|gb|ACF50402.1| 5'-3' exonuclease [Stenotrophomonas maltophilia R551-3]
          Length = 316

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 138/288 (47%), Gaps = 12/288 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+  R      H A+ FD
Sbjct: 10  LYLVDASIYVFRAWHSLPDEFQDSQGWPTNAVHGFARFLLDLLERERPR----HIAIAFD 65

Query: 67  YPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               + FR+ +YP YKANR   PE L  Q    +    A G+  +    +EADD+I +  
Sbjct: 66  EALDSGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHEYEADDLIGS-A 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               +      IIS DKDL QL+      +D  + ++ D+  V  + G+   ++    AL
Sbjct: 125 LHVHRGSHRGVIISADKDLSQLLVDHDEQWDYARNQRWDVAGVKARHGVHAHQIADYLAL 184

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEYAET 239
            GD++DNIPG+ G+G K+AA+LL  +G+++ +      +   + R        + E  E 
Sbjct: 185 CGDAVDNIPGVSGVGSKSAAVLLAHFGSMDVLYERLDEVPFLRLRGAAQMAVRLREQREH 244

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           A L R+L  +  D P+      L+ +  +   L    + L F     R
Sbjct: 245 ALLWRQLTTIALDAPLEGSQPGLLRQSADPELLAGLCQTLRFGPTTRR 292


>gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
 gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
          Length = 1178

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 157/333 (47%), Gaps = 28/333 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   +  + S +   L  + I+    R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 844  IAALCEICSIDSLISNFILPLQGDRISCAEGRIHCSLNI-NTETGRLSARTPNLQNQPAL 902

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++ P   LI ADY Q+ELRILAH+     +   F+   D H   A  ++
Sbjct: 903  EKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMY 962

Query: 787  GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
                + V  +                           RR AK +NFSI YG +   L+  
Sbjct: 963  QHIRDAVHEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTALGLSRD 1022

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA D +K ++     +  + +  K   R+   V T+ GR  H+  +       R
Sbjct: 1023 WKVSVKEARDTLKLWYGDRKEVLAWQKSQKKLAREKCEVYTLLGRSRHFPNLTQFGPGQR 1082

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P E    A
Sbjct: 1083 GHIERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPSESAEVA 1142

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K       L+V L V+ K + +W 
Sbjct: 1143 KAIVVECMSKPFHGTNILKVDLAVDAKCAKSWY 1175



 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 113/319 (35%), Gaps = 53/319 (16%)

Query: 370 KIVNTKDIQQWVQKLETIGSASF----KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            +V+  +  + + KL T    SF          ++A    P+             +  V+
Sbjct: 407 LVVDNIESARSIVKLLTTKYKSFIHACDTEVANIEAKEETPVGHGEVICFSIYSANSDVQ 466

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
               D     +          + +L     FFE+    K+ HN  +D  V+  YGI + G
Sbjct: 467 AA--DFGNGKTCIWVDVLDGGRGVLMEFAPFFEDPSIKKVWHNYSFDNHVIENYGIKVAG 524

Query: 486 F-EDIMLMSYVLDSGR---SSHDIASIA--QKWLSYTRKEILKSRK-------------- 525
           F  D M ++ + DS R     + +  +   ++ +    +++ K  K              
Sbjct: 525 FRADTMHLARLWDSSRKIDGGYSLEGLTNDRRVMDTVPEDLPKPGKISMKTIFGRKKVRK 584

Query: 526 -----SSIPIDKISDSQVQE------HAIENSNVILQLWLLLRPKLIVEK---------- 564
                  + ID + + Q ++      ++  +S   L+L+  L+ KL   +          
Sbjct: 585 DGSEGKVVSIDPVKELQREDRELWICYSSLDSMSTLRLYESLKRKLETRRWVLDGCPRGT 644

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS------G 618
           +   YE+   P   ++ +ME  G+ +D+  L ++            +     +       
Sbjct: 645 MYDFYEQYWCPFGALLVKMETEGMLVDRGYLSEIEKAAIAERELAADKFRKWASKYCPDA 704

Query: 619 EKFNLSSPKQLGDILFTKL 637
           +  N++S  Q+  +LF  +
Sbjct: 705 KYMNVNSDTQIRQLLFGGI 723


>gi|189218501|ref|YP_001939142.1| 5'-3' exonuclease [Methylacidiphilum infernorum V4]
 gi|189185359|gb|ACD82544.1| 5'-3' exonuclease [Methylacidiphilum infernorum V4]
          Length = 296

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/295 (33%), Positives = 160/295 (54%), Gaps = 9/295 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDG+ + +R+FYA P L+ +  G P NA+ G   +L +LL + + E      AV+F
Sbjct: 2   RLVLVDGNYYAFRSFYAMPSLATRS-GEPTNALYGLTMVLRRLLSDLKPELG----AVVF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D      R  +  DYKANRP+IP  L  QLP ++   +A G+  IE++G EADD+IA+YT
Sbjct: 57  DGGLPAERLALRADYKANRPEIPSALKSQLPWIKKLVKALGLCPIEVEGQEADDVIASYT 116

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQ 183
             A ++G  V + ++DKDLM LV     +Y   K+    +    + +KW + P ++  + 
Sbjct: 117 KKAVEKGIDVVLATSDKDLMSLVGEHVRVYTVEKKRFKLLGQREIEEKWSVKPSQIPDVL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS+DNIPG+ GIG KTA   + +YG+L ++L     I  ++  + + E  E   ++
Sbjct: 177 ALIGDSVDNIPGVEGIGKKTATKWIIQYGSLFSLLQARD-IPDRRFAKLLEENKERIMIN 235

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            K++ L+ ++ + +P+E L +   +        +  EF KL   V         +
Sbjct: 236 WKMLELKDNIELPLPIEELRIV-PDYEAQEKLFEKFEFKKLAQEVRKLSGTKEKD 289


>gi|327439080|dbj|BAK15445.1| 5'-3' exonuclease [Solibacillus silvestris StLB046]
          Length = 292

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/277 (34%), Positives = 151/277 (54%), Gaps = 14/277 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K  HL +VDG + ++R+F+A+  ++   R  DG P N + GF   +      ++    
Sbjct: 1   MTK-PHLLIVDGMALLFRSFFASAAMNQFIRLDDGTPSNGVQGFARHVL----TAQNLMQ 55

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV +D  AVTFRN++Y  YKANRP  PE +LPQ  + +  ++  G      QG EA
Sbjct: 56  PTHLAVCWDMGAVTFRNDLYDGYKANRPAPPEEMLPQFDMAKRVSEMIGWQNFGTQGLEA 115

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I +      K+   +T+IS DKDL+QL++P+T +  T K     +       ++++G
Sbjct: 116 DDLIGSMIKKW-KDDAQITVISGDKDLLQLLNPSTKIAFTKKGYTEYDVYTESRFVEEYG 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P++   ++A  GD+ D  PG+ GIG KTA  L+Q +G+++ +L     +K   +R  I
Sbjct: 175 IAPKQFAEVKAFMGDTSDGYPGVKGIGPKTALQLIQNHGSIDGVLEALPTLKPG-QRIKI 233

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
            E     RLS +L  +  DVPI + L+HL L      
Sbjct: 234 SENLAMLRLSHQLATIHCDVPIDVELDHLALSPYAPD 270


>gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 552

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 112/357 (31%), Positives = 187/357 (52%), Gaps = 28/357 (7%)

Query: 461 HFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
               I +++K     L+   I+  +    DI   S+++D       ++SI    +  +  
Sbjct: 221 TTKMICYDVKDTLHKLNALNINIVVDKVFDIKQASFLIDPLIRDRSLSSIVVGEIDESNP 280

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMI 577
            ++ +                         I   +     K   +K L  +    D P+ 
Sbjct: 281 AVVIT------------------------AIWNAYDTQMEKFKNDKILYKIATDFDFPLA 316

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
            ++ +ME  G++I+   L  +S EI K    L++ I+D++G  FN++SP QL D+LF KL
Sbjct: 317 PLLFKMEKRGVKINTSYLADMSHEIGKKYEELQQKIFDIAGYNFNIASPAQLSDMLFIKL 376

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
           + P+    K     +T Q       G +P+I+ I + R+L+K+K+TY D+LP  ++ +  
Sbjct: 377 QLPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTRELAKLKNTYVDALPKLVD-KNY 435

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+HT ++     TGRL+S  PNLQNIPI++ LG+KIR AFI+     L+SADYSQ ELR+
Sbjct: 436 RLHTTFNQDVVSTGRLSSTHPNLQNIPIRSTLGKKIRNAFIADEDNILVSADYSQFELRL 495

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            A +A    L   F N +DIH   A++++ + +++V+   RR+AK INF ++YG+SP
Sbjct: 496 AAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVTSNQRRNAKVINFGVLYGMSP 552



 Score =  141 bits (355), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 144 LMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGI 199
           ++QLVSP T +Y   +     E+ +   +  K GI   + + L+AL GDS DNIPG+PGI
Sbjct: 1   MLQLVSPLTKVYAMKRGLSNIEEYNPSILENKLGIKVSQFLDLKALKGDSSDNIPGVPGI 60

Query: 200 GYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL 259
           G KTA  LL+E+ +L+NI  N   IK    +  +L   E+A +SRK+  +  D P+   L
Sbjct: 61  GDKTAVALLKEFESLDNIYKNIEIIKPAWAK-KLLAGKESAYISRKVGQIWRDAPVDFDL 119

Query: 260 EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
           + + + + +  +L   L+ LEF  LI R+ T    +  N
Sbjct: 120 KSMDIHNLDVVKLSDQLRKLEFNSLIKRLPTAMQDENLN 158


>gi|312377443|gb|EFR24272.1| hypothetical protein AND_11228 [Anopheles darlingi]
          Length = 2035

 Score =  256 bits (654), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 126/632 (19%), Positives = 258/632 (40%), Gaps = 86/632 (13%)

Query: 406  PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
               +AI      +D +  +   ++DL        +  +    E  + +++    EH    
Sbjct: 1419 LAGLAIYKTADAEDPTEPI-VYYLDL-------QSASDIRDDEKRTLVRELLRREHLTVT 1470

Query: 466  GHNIK------YDKLVLHRYGISMRGFEDIM-------LMSYVLD-SGRSSHDIASIAQK 511
              + K      +   +L   G  +  ++D++       +  ++L  +   +  + ++ ++
Sbjct: 1471 MLDAKEQLRLMFGTGLLRATGTGVNSWDDLLCSVQDPRVACWLLQTADERTLSLEAMIER 1530

Query: 512  W---LSYTRKEILK------SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                L+ T K +         +     +   S    ++ A   S ++  L   +R  L  
Sbjct: 1531 HCPELTGTPKRLAGLEWGITPKGIGYGLHHHSPIAARQRAATESVIVSHLMRPVRKLLQQ 1590

Query: 563  -EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621
               L   ++  + P+  V+++ E+ G  +D+  L  +   +  +   +  +   L+G + 
Sbjct: 1591 VAGLEACFQSREMPVHVVLARSEVVGFPVDRTALGALIERLKASRERIATDARLLNGGR- 1649

Query: 622  NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
                      + F   +  + A       +      + +   DNP+   ++ +R++    
Sbjct: 1650 ---------KLDFGSSRAVAAALRLAASRERPRTVRQVLERLDNPLAALVIAYRKIDSNL 1700

Query: 682  STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI---------------PIK 726
            +   + L   I    +      S   T TGR+   EPNLQ +                 +
Sbjct: 1701 ARTIEPLYRTIQLSAESRVHGRSHCFTSTGRITMHEPNLQTVVKDFTVPAPLAGGMRERR 1760

Query: 727  TDLGQKIRRA----FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS-------- 774
            T   ++          +  T+ L+SAD+ Q+EL IL H+++   L    + S        
Sbjct: 1761 TTDEEEHFSCRSTFACNDTTRVLLSADFCQLELCILTHLSQDRRLLAALDGSAVADGAGS 1820

Query: 775  ----LDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
                 D+ R +AA    + +  +VS ++R   K I + +IYG+    +A +L++    A 
Sbjct: 1821 RRKPQDVFRSLAARWHQLGDASEVSDELRTRTKAIVYGVIYGMGARAMAAELQMEEESAR 1880

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS---PKSSIRNINERA 886
              ++++   +P I  Y E+     RQ GY+ET+ GRR +   I        + R   ER 
Sbjct: 1881 SLMEQFHRSYPDIRRYQERVIRLTRQLGYIETLTGRRRYLPAIGQAATADPAARAEAERQ 1940

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDHKL-----ATKMLLQIHDELVFEVPEEEITTAS 941
            A+   IQGSAADI + A++ + ++L  +       A +++L +HDELV+E+P  ++   +
Sbjct: 1941 AVCTTIQGSAADILKNAIVRMERNLRKYADVLDVGAIQLVLHLHDELVYELPRAQLPKVA 2000

Query: 942  QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            +I+  SME        L VPL+V +K  ++W 
Sbjct: 2001 KILRSSMENCA----KLSVPLRVKLKAGDSWG 2028


>gi|213423791|ref|ZP_03356771.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 304

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/354 (23%), Positives = 142/354 (40%), Gaps = 57/354 (16%)

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
              AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+PPE ++   A
Sbjct: 1   AREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFLA 60

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238
           L GDS DNIPG+PG+G KTA  LLQ  G L+ +     +I        K     + +  +
Sbjct: 61  LMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKD 120

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A LS KL  ++TDV + +  E L ++      L+   K  EF +    V       A  
Sbjct: 121 VAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAKG 180

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            +P                                         + +  + + ++     
Sbjct: 181 AKP-----------------------------------------AAKPQETVVIDESPSE 199

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
               ++ ++Y  I++   ++ W++KL+     +F   TD++D   +  + ++ +      
Sbjct: 200 PAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGV- 258

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                V   ++D                +  L  LK   E+E   K+G N+KYD
Sbjct: 259 AAYVPVAHDYLDAP---------DQISRQRALELLKPLLEDEKVRKVGQNLKYD 303


>gi|47094187|ref|ZP_00231903.1| 5'-3' exonuclease family protein [Listeria monocytogenes str. 4b
           H7858]
 gi|47017432|gb|EAL08249.1| 5'-3' exonuclease family protein [Listeria monocytogenes str. 4b
           H7858]
          Length = 260

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/264 (34%), Positives = 146/264 (55%), Gaps = 13/264 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++    +S  
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAIR----QSNP 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI
Sbjct: 119 DCIGTITVQASN-TIATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGI 177

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P + + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K   ++  I 
Sbjct: 178 SPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPA-QQTKIQ 236

Query: 235 EYAETARLSRKLVMLRTDVPITIP 258
           E      LS+KL  + T+VP+ I 
Sbjct: 237 EDLAKVELSQKLARIHTEVPLEID 260


>gi|39939162|ref|NP_950928.1| 5'-3' exonuclease [Onion yellows phytoplasma OY-M]
 gi|39722271|dbj|BAD04761.1| 5'-3' exonuclease [Onion yellows phytoplasma OY-M]
          Length = 322

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 14/288 (4%)

Query: 5   NHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            HL LVDG+S ++RA++AT      L +   G+  NA+  F  M  K+L+ ++      +
Sbjct: 2   KHLVLVDGNSLLFRAYHATASKYKPLLQNKKGIYTNALLSFIRMFEKILEETKG-----Y 56

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    T R+++Y  YK  RP+ P  L+ Q+PL++      G+       +EADDI
Sbjct: 57  ILVAFDTHKPTKRHQLYDAYKQGRPETPSALISQIPLIKQYLDLIGVKYHAQDEYEADDI 116

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP 176
           I T    A  +   V+I S+D+DL+QLV     +    K  +         + +++G+  
Sbjct: 117 IGTLAKEASNQNKTVSIYSSDQDLLQLVDEKITVCLLKKGLREIKCYKPPTLFEEYGLKE 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +M+  ++L GD  DNI G+ GIG KTA  LLQEY +L+N++ N   IK    +  I   
Sbjct: 177 YQMIDYKSLIGDPSDNIKGVLGIGPKTAQKLLQEYDSLDNLMQNLDNIKP-ILKIKIQNS 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
                LS+ L  +   VP+        ++      L +F + ++F +L
Sbjct: 236 QADLELSKTLTAIDLKVPLPFDFMQTEIQIRLAQNLKNFYEEMDFRRL 283


>gi|330684998|gb|EGG96673.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU121]
          Length = 292

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 144/293 (49%), Gaps = 28/293 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R F+AT L ++      G+P N I GF   ++  +   +     +H 
Sbjct: 3   NKVLLVDGMALLFRHFFATSLHNQFMYNSKGVPTNGIQGFVRHIFSAIHEIQ----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I +  +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFEGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVTNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ D+DL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQTYSVDN-DVYIITGDRDLLQCINENVEVWLIKKGFNIYNRYTLNRFNEEYELAPQ 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+YG++E ++     +    +R+ I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYGSVEGVIEQIDALTPG-QRKKINDNM 236

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
               LS++L  + T+VPI                     + + F   +N + +
Sbjct: 237 NELHLSKRLAEIHTNVPIDSE---------------QLFQDMSFATTLNHILS 274


>gi|262341095|ref|YP_003283950.1| DNA polymerase I [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272432|gb|ACY40340.1| DNA polymerase I [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 297

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 163/303 (53%), Gaps = 18/303 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M     LFL+D    IY+++YA    PLL+ K  GL  + I  F   L K L + +    
Sbjct: 1   MNNNKKLFLIDAYPLIYQSYYAYINKPLLTSK--GLNTSPIINFTYFLIKTLNDEK---- 54

Query: 58  ASHFAVIFDY-PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-GF 115
            S+ A IFD    ++FR + Y  YKA+R KIPE +   +P +R   + F I  +  + G+
Sbjct: 55  PSYMATIFDDNQEISFRKKEYYKYKAHRKKIPEAICIAIPYIRKILKTFQISCLHAKNGY 114

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKK 171
           EADDII T    AE +G+ + II+ DKD  QLV+    +Y        ++   IE + +K
Sbjct: 115 EADDIIGTIAKKAENKGYIIYIITLDKDFFQLVTENIKVYIPPFKGNPKKIFGIEEIKEK 174

Query: 172 WGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           +G+   ++++ L ++ GD  DNIPG+PGIG K A   +Q+YG++E +L +   +K  K +
Sbjct: 175 FGVNHPKQVIDLWSMMGDPSDNIPGLPGIGEKNAKKFIQKYGSIEKLLNSTHDLKG-KIQ 233

Query: 231 ENILEYAETARLSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +N+ +      LS+KL+ + TD+P+ +   E   ++  N   +    + LEF +L+ +  
Sbjct: 234 KNLEKNKNLGLLSKKLITIVTDIPLFSFHEEKFHVKKPNWLSIKKIFEELEFIRLLKKAH 293

Query: 290 TTY 292
             Y
Sbjct: 294 EYY 296


>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
          Length = 1032

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 108/333 (32%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   +  + S +   L  NHI+    R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 698  IAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNI-NTETGRLSARTPNLQNQPAL 756

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++ P   LI ADY Q+ELRILAH+A    +   F+   D H   A  ++
Sbjct: 757  EKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMY 816

Query: 787  GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
                + V  +                           RR AK +NFSI YG +P  LA  
Sbjct: 817  QHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARD 876

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA D +K ++     +  +  K K   ++   V T+ GR   +  +    S  R
Sbjct: 877  WKVSVKEAKDTLKLWYRDRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQR 936

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P E    A
Sbjct: 937  GHIERAAINAPVQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLA 996

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K       L V L V+ K + NW 
Sbjct: 997  KSIVVECMSKPFYGTNILNVELAVDAKCAQNWY 1029



 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 129/378 (34%), Gaps = 63/378 (16%)

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND-SYTKIVNT 374
           +ET +  D   +        + T+K   + +P K  + +  K ++  +        +V+ 
Sbjct: 205 VETSLQFDDKARDGYDGDEHECTAKNTVQDSPAKAPMSKESKDARKALATVYDKVLVVDN 264

Query: 375 KDIQQWVQKLETIGSASF----KIITDTMDAFHSKPIA----IAISTLDQKDDTSFKVET 426
               + V +L T    +F          +D     P++    I  S      D       
Sbjct: 265 VKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVICFSIYSGNSDAE----- 319

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D     +          +++L     FFE+    K+ HN  +D  V+  YGI + GF
Sbjct: 320 --ADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENYGIKVAGF 377

Query: 487 E-DIMLMSYVLDSGRS---SHDIASIAQKW--LSYTRKEILKSRKSS------------- 527
             D M ++ + DS R     + +  +      +    KE+ K  K S             
Sbjct: 378 HADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKD 437

Query: 528 ------IPIDKISDSQVQE------HAIENSNVILQLWLLLRPKLIVEK----------L 565
                 I ++ +   Q  +      ++  +S   L+L+  L+ KL  +           +
Sbjct: 438 GSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSM 497

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS------GE 619
              YE   +P   ++ +ME  G+ +D+  L ++            +     +       +
Sbjct: 498 YDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAK 557

Query: 620 KFNLSSPKQLGDILFTKL 637
             N++S  Q+  + F  +
Sbjct: 558 YMNVNSDTQIRQLFFGGI 575


>gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
 gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
          Length = 853

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 148/687 (21%), Positives = 253/687 (36%), Gaps = 118/687 (17%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL-KK 455
              D   +    ++IS    +         +  +++   S+D        + +L  + + 
Sbjct: 158 TPFDPHQADICTVSISAKAHESRVVPISHKVGKNIAPELSRDEA-----REAVLDLMDRY 212

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYV----------LDSGRSSH- 503
            F +E  LKI  N+ ++     RY   + G   D  LM +V          L+S    H 
Sbjct: 213 VFTHEPTLKIAVNLAFETKFAARYKRYILGRVADP-LMMWVRSMQIAAPGRLNSLSKPHT 271

Query: 504 --DIASIAQKWLSYTRKEILK--SRKSSIPIDKISDS--QVQEHAIENSNVILQLWLLLR 557
              + +  +K    T ++  +   +K     D+I  S  +   ++ E+++  LQ +   +
Sbjct: 272 GWGLKTATKKTFGVTMQDFSQLLQKKGVQFFDEIDASTKEGFIYSAEDADYGLQHYHYWK 331

Query: 558 PKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI--- 613
             +            ++ P + V+  ME  G+  + D       E  +   +  E I   
Sbjct: 332 TIIEQIPGYDKWLHDIEMPFMRVIGIMEFWGMPWNTDTANARYEEALQAQENASEEIKRI 391

Query: 614 -YDLSGEKFNLSSPKQLGDI---LFTKLKFPSGA-KTKTGQWKTTAQ------------- 655
            ++ +GE+       + G +   LF K+K P      KTG      +             
Sbjct: 392 IFEATGEEVAPGKTGKTGSVKLALFNKMKLPILKISDKTGNASLDEEALIDMRFMLENKL 451

Query: 656 ---DLEQINCGDNP----------------------------IIKNILEWRQLSKIKSTY 684
              D E+      P                            I     E+          
Sbjct: 452 ESIDEEKYLAIPLPEGWEDIEPDANYGEPGFNGDITKQERGAIRIKKREFHPFKDAGIAL 511

Query: 685 ADSLPN----------HINKRTQRVHTFYSLAS------TMTGRLASLEPNLQNIPIKTD 728
            + +            HI  R + ++ F           T TGRL S +PN QN+P   +
Sbjct: 512 IEQMMKIQKYTTLISSHIVGRQKYLNPFTDRIHAGYSSFTDTGRLNSFKPNGQNVPRPDN 571

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
              KIR  F   P K L   D+S  ELR++A  +    + ++F  + D+HR  A+ + G 
Sbjct: 572 DDFKIRSFFAPKPGKILFFIDFSGFELRLIAWKSNDEVMIELFNTNGDMHRRTASALTGK 631

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQ------LRIPRSEAADYIKRYFHRFPGI 842
               ++   R +AK  NF I YG + + L         +R    E A  +      +P I
Sbjct: 632 PESDITKIERTNAKAGNFGIAYGGTEYALQKTFKTDYGVRKTLDECAAIVNAVKTAYPRI 691

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
            +   +     R+NGY ETI+G +    +IN   S +R  +ER A N PIQGSAADI + 
Sbjct: 692 PQMQRQAILDARENGYAETIYGYKRLLRDINGTNSKLRGSDERRAGNTPIQGSAADIMKD 751

Query: 903 AMISVHKSLEDHKLATK--------------MLLQIHDELVFEVPEE--EITTASQIIVH 946
               V+  + +     +              M+ QIHDE++FE+ ++   +  A   I  
Sbjct: 752 CQNKVYDRIGEDTFKQRQGETDVLFTHGSIDMIAQIHDEMIFEMDDDPALVEKAGAWIKA 811

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQ 973
            ME+  LP     VP+     V  +W 
Sbjct: 812 VMERPPLPDFP--VPVIAEASVGKDWG 836


>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1047

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 105/333 (31%), Positives = 165/333 (49%), Gaps = 30/333 (9%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I ++ E   +  + S +   L  ++++ +  RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 715  IASLCEVCSIDALISNFILPLQGSNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPAL 773

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++ P   L+ ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 774  EKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMY 833

Query: 787  GVNIEKVS--------------------------PQMRRHAKTINFSIIYGISPFRLATQ 820
                E V                              RR AK +NFSI YG +   L+  
Sbjct: 834  PHIREAVENGQVILEWHPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAIGLSRD 893

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA D +K +++    + ++ E+ K    ++GYV T+ GR   +    S   + +
Sbjct: 894  WKVSVEEAQDTVKLWYNDRQEVRKWQERRKKEAIEDGYVRTLLGRSRRFPRYKSR--AQK 951

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
            N  +RAAIN P+QGSAAD+   AM+ +  + +  KL  ++LLQIHDE++ E P E    A
Sbjct: 952  NHIQRAAINTPVQGSAADVAMCAMLEISTNQQLKKLGWRLLLQIHDEVILEGPIESAEIA 1011

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K    +  L V L V+ K + NW 
Sbjct: 1012 KDIVVDCMSKPFNGRNILSVDLSVDAKCAQNWY 1044



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 110/302 (36%), Gaps = 80/302 (26%)

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
               +D  H + I  +I    + D    K              D  G+N   +E+L+  K
Sbjct: 299 EETPVD--HGELICFSIYCGPEADFGYGKSC---------IWVDVLGENG--REVLAEFK 345

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASI-- 508
            +FE+    K+ HN  +D  ++  +GI + GF  D M M+ + DS R     + + ++  
Sbjct: 346 PYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLWDSARRIEGGYSLEALTS 405

Query: 509 -------------AQKWLSYTRKEILKSRKSSI-----------PIDKISDSQVQE---H 541
                        A      + K I   RK              P++++     +    +
Sbjct: 406 DPKVLGGTQTKEEADFLGKISMKTIFGKRKLKKDGSEGKMVVIPPVEELQREDREAWISY 465

Query: 542 AIENSNVILQLWLLLRPKLI------------VEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +  ++   L+L+  +  KL                +L  Y    +P  +++ +ME  GI 
Sbjct: 466 SALDAISTLKLYESMTKKLQMMDWRLDGKPVLERTMLDFYHEFWRPFGELLVKMEAEGIL 525

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKF--------------NLSSPKQLGDILFT 635
           +D++ L ++     + +   E+    ++G +F              N+ S  QL  + F 
Sbjct: 526 VDREYLAEI-----EKVAKAEQQ---VAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFG 577

Query: 636 KL 637
            +
Sbjct: 578 GI 579


>gi|167820744|ref|ZP_02452424.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 264

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/247 (33%), Positives = 134/247 (54%), Gaps = 5/247 (2%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG- 179

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLE----HLILEDCNGPRLISFLKALEFTK 283
              +N+    +   L+RKLV + T   +   +E     L  +      L        F  
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKT 239

Query: 284 LINRVAT 290
            +  + +
Sbjct: 240 WLRELDS 246


>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
 gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
          Length = 988

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 174/368 (47%), Gaps = 31/368 (8%)

Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
           L    +  +    + G++     D E      + I +++++ +Q+  + +T+   L    
Sbjct: 624 LLKNNQLAAKVYNQIGEYYKQKGDEEMGKRASHAI-ESLIQLKQVETLLTTFIIPLRELA 682

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +K   R+H   ++ +T TGR+++ +PNL N P       KIR AF +    KLI ADY Q
Sbjct: 683 DKDG-RIHCSLNM-NTETGRISARKPNLMNQPSHDKDVYKIRSAFQAGKGNKLIVADYGQ 740

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV------------------- 793
           +ELRILAH+     + + F+   D H   A  ++    E++                   
Sbjct: 741 LELRILAHMTNCKAMIEAFKMGGDFHSRTAMGMYPKLKEEIEKGELLLEWDKSQGEPPAP 800

Query: 794 -----SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
                    R+ AK +NFSI YG S    +        EA + +  +F     + E+ E 
Sbjct: 801 LLKDKYSSERKKAKMMNFSIAYGKSAHGFSKDWNCSMKEAQEALDAWFADRKEVKEWQEN 860

Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIR--NINERAAINAPIQGSAADITRRAMIS 906
           TK    ++GY +T+ GR  + + +   KS+        RA+IN PIQG AAD+   AM+ 
Sbjct: 861 TKKIALEHGYTQTMMGRYRNLERLTHSKSARHLVQHGLRASINTPIQGGAADLVIAAMVK 920

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966
           V +  + ++L  K+LLQIHDEL+ E PEE    A   ++  ME      + L+  ++V+ 
Sbjct: 921 VSQDPKLNELGYKLLLQIHDELILEGPEEHAQEALARVIEIMENPLDTPLLLK--MEVDA 978

Query: 967 KVSNNWQE 974
           KV NNW E
Sbjct: 979 KVGNNWYE 986



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 90/204 (44%), Gaps = 15/204 (7%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSA--SFKIITDTMDAFHSKPIAIAISTLDQKDD 419
            IN    T + N     + V+ L+++ +   ++   T  +DA    PI            
Sbjct: 64  KINIPGTTIVKNRDQAHKVVKILKSLPNREHAWDTETIDVDAKLESPIGKGKIIC----A 119

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
           ++F    +          D+  +NT   +++   K++ E+  + KI HN  +D+ + + +
Sbjct: 120 SAFCGIDVDFGNGPRLFIDNFAQNT---DLIQIFKEYLEDSRYKKIWHNYGFDRHIFYNH 176

Query: 480 GISMRGF-EDIMLMSYVLDSGRSS--HDIASIAQKW---LSYTRKEILKSRKSSIPIDKI 533
           GI+++GF  D M ++ + D  R    + +A++ + +   + Y +++++   + SI I+  
Sbjct: 177 GINVQGFGGDTMHLARLADPSRGPKEYSLANVTKHYEEEIKYLKRQLINDLRKSIQINTQ 236

Query: 534 SDSQVQEHAIENSNVILQLWLLLR 557
               V     + +++  ++    +
Sbjct: 237 ELQSVLAALQKGADLPHEIIQKFK 260



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 77/192 (40%), Gaps = 31/192 (16%)

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI----------DKISDSQVQEHAI 543
           Y L++   + ++  +      + +K+ LK  K    I          D     +   ++ 
Sbjct: 294 YYLNTNLKT-NMKQL------FGKKKYLKDGKEGKTIEFPNTIRMHTDPELLEKWVHYSC 346

Query: 544 ENSNVILQLWLLLRPKLI--------VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            ++ +   ++ +L+ +L         ++ +L +Y +  KP  ++++ +E  G +++ + L
Sbjct: 347 LDAEITFFVFQVLKDELKSLSTNFEDMKNMLDLYNKYWKPFGEILTDLERRGFELNLEHL 406

Query: 596 KQVSAEISKNLLSLEENIYDLSG------EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
            ++  +   +++ LE+   D         E+FN SS +QL  + F   K           
Sbjct: 407 DKIRVQAENDMIKLEKQFLDWVCSTQQGLEQFNYSSAQQLQQLFFAPFKRKKRITKDKVD 466

Query: 650 WKTTAQDLEQIN 661
                ++ + + 
Sbjct: 467 ANLDDKEKKDLE 478


>gi|167915857|ref|ZP_02502948.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 248

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/247 (33%), Positives = 134/247 (54%), Gaps = 5/247 (2%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG- 179

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLE----HLILEDCNGPRLISFLKALEFTK 283
              +N+    +   L+RKLV + T   +   +E     L  +      L        F  
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKT 239

Query: 284 LINRVAT 290
            +  + +
Sbjct: 240 WLRELDS 246


>gi|167743556|ref|ZP_02416330.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 257

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/247 (33%), Positives = 134/247 (54%), Gaps = 5/247 (2%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG- 179

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLE----HLILEDCNGPRLISFLKALEFTK 283
              +N+    +   L+RKLV + T   +   +E     L  +      L        F  
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKT 239

Query: 284 LINRVAT 290
            +  + +
Sbjct: 240 WLRELDS 246


>gi|167724605|ref|ZP_02407841.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 258

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/247 (33%), Positives = 134/247 (54%), Gaps = 5/247 (2%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG- 179

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLE----HLILEDCNGPRLISFLKALEFTK 283
              +N+    +   L+RKLV + T   +   +E     L  +      L        F  
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKT 239

Query: 284 LINRVAT 290
            +  + +
Sbjct: 240 WLRELDS 246


>gi|118083459|ref|XP_416549.2| PREDICTED: similar to DNA polymerase theta [Gallus gallus]
          Length = 2620

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 89/275 (32%), Positives = 146/275 (53%), Gaps = 37/275 (13%)

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
            +R AF+  P   +++ADY Q+ELRILAH ++   L + F    D+ + +AAE   ++ E 
Sbjct: 2344 MRHAFVPFPGGFILAADYCQLELRILAHFSRDCRLIEAFNKGADVFKSIAAEWKMIDSEA 2403

Query: 793  VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
            V    R+ AK I + IIYGI    L  Q+ I  ++AA+YI+ +  R+ GI +++++T + 
Sbjct: 2404 VGDSTRQQAKQICYGIIYGIGAKSLGEQMGIDDNKAANYIESFKSRYTGIQKFLKETVSN 2463

Query: 853  VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
             R++G+V+TI GRR +   I      I+   ER A+N  +QGSAADI + A +++ + LE
Sbjct: 2464 CRRDGFVQTILGRRRYLPAIRDSNPYIKAHAERQAVNTTVQGSAADIVKTATVNIQRRLE 2523

Query: 913  ----------------DHKLATKM-----------------LLQIHDELVFEVPEEEITT 939
                                  ++                 +LQ+HDEL++EV E+++  
Sbjct: 2524 ALSSVNKSHGHLENSFQRDKTGRLSRKRNREMLHPISGGFFILQLHDELLYEVAEDDVIQ 2583

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             +QI+ H ME A    + L V L V +K+  +W E
Sbjct: 2584 VAQIVKHEMENA----VKLSVKLNVKVKIGPSWGE 2614



 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 152/380 (40%), Gaps = 37/380 (9%)

Query: 407  IAIAISTLDQKDDT-SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF-ENEHFLK 464
            + +A+    +     S +      ++    +     KN    E L +L+ +  E +    
Sbjct: 1926 VGLAVCWGGKDAYYISLQQMQDQTEICPSLAPPPLDKNLSVTERLRHLQLYLQEKQERSL 1985

Query: 465  IGHNI--KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKE 519
            + +N    Y  LV+   GIS+ G FED  +  ++LDSG     + ++   +L       E
Sbjct: 1986 VMYNFIQHYKTLVMAC-GISLEGSFEDPKVACWLLDSGSKECTLHNMVTNFLPNELPLLE 2044

Query: 520  ILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
             + + +   S+ +    D   +  A   S +I  +   L  +L  E L  V+ +++ P  
Sbjct: 2045 GVGTGQGVQSLGLSSSEDHSGRYRAAIESVLIFNIMNQLHSELRKENLTDVFSKVEMPNH 2104

Query: 578  DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
              ++ +E+ GI       +     +   L  +E   Y L+G  F+L+SP  + ++LF +L
Sbjct: 2105 YCLALLELNGIGFSTAAYETQKQVMQAKLTEIETKAYQLAGHSFSLTSPDDVAEVLFLEL 2164

Query: 638  KFP----------------------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
            K P                       G + +  +  +T +D+ +     +P+   ILEWR
Sbjct: 2165 KLPQNGDVKVQGNKKTLGYTRRTSIKGNRVRLSKQFSTTKDVLEKLKPLHPLPGLILEWR 2224

Query: 676  QLSKIKSTYADSLPNHINK----RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
            +++   S     L            +R++   S   T TGR++  EPN+QN+P   ++  
Sbjct: 2225 RINSAISKVVFPLQREKRFNSALGMERIYPV-SQTHTATGRVSFAEPNIQNVPRDFEIEM 2283

Query: 732  KIRRAFISPPTKKLISADYS 751
             I      P    + S   S
Sbjct: 2284 PIVVEESPPFRTHVYSCAVS 2303


>gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 221

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 137/220 (62%), Gaps = 4/220 (1%)

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +ELRI+A ++    L + F +  D H+ VA+ ++G+ +E+++   R H K +++ + YG+
Sbjct: 1   MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGL 60

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           S + LA QL+I   EA     +YF  F  +HEY+E   +  R+ GY ETI+GRR ++  +
Sbjct: 61  STYGLAQQLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGL 120

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            SP  ++R+  ERAA+NAPIQGSAADI + AMI    SL D  L ++++LQIHDELV E+
Sbjct: 121 KSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEI 180

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              E   A+ ++ ++ME A    + + VPL  +  + ++W
Sbjct: 181 APGEAEQATALVRNAMEHA----VTMAVPLDASTGIGSDW 216


>gi|254448493|ref|ZP_05061953.1| exodeoxyribonuclease IX [gamma proteobacterium HTCC5015]
 gi|198261876|gb|EDY86161.1| exodeoxyribonuclease IX [gamma proteobacterium HTCC5015]
          Length = 382

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 99/296 (33%), Positives = 155/296 (52%), Gaps = 16/296 (5%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY- 67
           LVD S +++R+++  P      +G P NA+ GF + + +LL + +     SH    FD  
Sbjct: 6   LVDSSIYVFRSWHVMPDTLTDAEGHPANAVYGFADFVLQLLHSEQ----PSHIGFAFDLC 61

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
            A  +R EI   YKANRP  P  L  Q    R   QA G+       FEADDII T++  
Sbjct: 62  HAGNWRREIDAQYKANRPPPPAELKRQFAHCRELLQASGLACFGSDRFEADDIIGTFSRS 121

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
             ++GF  TII+ DKDL QL+      ++  + +++D   + K+WGI PE++  L AL G
Sbjct: 122 LREQGFVSTIITGDKDLTQLIGEGDEWWEVARNKRLDYRGIHKQWGIYPEQVADLLALVG 181

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR-----ENI-LEYAETAR 241
           D  DNI G+PG+G KTAA LL+++G+++ +L N   I + K R     EN+   + +T R
Sbjct: 182 DKSDNIAGVPGVGVKTAANLLKKFGDIDGVLNNIDAIGEMKFRSAKRIENLVRMHQDTIR 241

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-----TKLINRVATTY 292
           L++ L ++  D  I      L+    +   L    + L+F      + +N + +T 
Sbjct: 242 LAKLLTVIPDDPTINTHASALVPCQWDESHLGDLFQRLDFSPPRQKRWLNALNSTL 297


>gi|145332811|ref|NP_001078271.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|332645361|gb|AEE78882.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 413

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 160/297 (53%), Gaps = 26/297 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA------IAGFCNMLWKLLQNSRKE 55
                + L+DG+S IYRA+Y    L+R + G   +A      +    + L  L+   +  
Sbjct: 91  SSNGRVMLIDGTSIIYRAYYKL--LARLNHGHLAHADGNADWVLTIFSSLSLLIDVLK-- 146

Query: 56  SIASHFAVIFDY------PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPA 109
            + SH AV+FD+        + FR+ +YP YK+NRP  P+ ++  L  ++ + +A  I  
Sbjct: 147 FLPSHVAVVFDHDGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKV 206

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI---DI 165
           IE+ G EADD+I T    +   GF V ++S DKD  Q++SP+  L   T +  ++    +
Sbjct: 207 IEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGM 266

Query: 166 EHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
           E   KK+G + P + V + AL GD  DNIPG+ GIG   A  L+  +G LEN+L +   I
Sbjct: 267 EDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLLQSVDEI 326

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDC--NGPRLISFL 276
           K+ K +E+++  A+ A LS+KL +LR+D+P   +    + L  +    NG +L S L
Sbjct: 327 KEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPEDNGEKLSSLL 383


>gi|145350924|ref|XP_001419843.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580075|gb|ABO98136.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 460

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 111/437 (25%), Positives = 191/437 (43%), Gaps = 39/437 (8%)

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ-- 628
            ++ P +  +  M+   I  D   +++  A +   L  LEE  Y L+ +   L S     
Sbjct: 2   EIEMPFVAPIVAMQTVRIPFDARKMREEMATMDDRLKKLEE--YALTQKWIVLDSSVSIA 59

Query: 629 ---------LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
                    L D L+  LK       KT          +     ++P    I+E R + K
Sbjct: 60  RRALTNNTYLQDRLYKHLKLTPPPGAKT--SIDANNLRKLYEQSNHPFPLLIIEHRSVFK 117

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK------- 732
            +  +AD++         R+       +   GRLA  EPN  ++      G +       
Sbjct: 118 -RRGFADTILGMY-ADDSRIRYSIFQTNHDCGRLAHSEPNFHSLAHDMTCGDQFYGLDAP 175

Query: 733 ---IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL------DIHRMVAA 783
              IR AF+ P  K  + ADYSQ+ELRI+AH +    L  + +N        D   M+A+
Sbjct: 176 KISIRSAFVPPAAKVFVRADYSQLELRIMAHFSGDRTLIHMLQNPEPNNLKDDPFTMLAS 235

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
           + +    + V  + R + K + + ++YG    +LA+ LR+    A   + R+    P + 
Sbjct: 236 KWYRKAPDTVLAEERTNCKNLVYGLLYGSGAKKLASDLRMCEEAAKSEVARFKSMLPRLM 295

Query: 844 EYIEKTKNFVRQNG---YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
           E+++      R+      V TI  R  ++ +++S  +  R   ER A+N   QGSAADI 
Sbjct: 296 EWLDGIVIRAREEKPIARVTTISARHRYFPDLHSKNNDDRAAAERQAVNTVCQGSAADIF 355

Query: 901 RRAMISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           + A++ V  +L    L    +++L +HDE VFE         +QI+ H+ME     + NL
Sbjct: 356 KTAVVRVIDTLRTKYLIERCQLVLTVHDECVFECDARSAKAIAQIVRHAMESVA-NEFNL 414

Query: 959 RVPLKVNIKVSNNWQEE 975
            VPL V +++ ++  ++
Sbjct: 415 AVPLPVKVQIGSSLGDD 431


>gi|319400795|gb|EFV89014.1| DNA polymerase I domain protein [Staphylococcus epidermidis FRI909]
          Length = 292

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 146/292 (50%), Gaps = 28/292 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            + LVDG + ++R FYAT L ++      G+P N I GF   ++  +    KE   +H A
Sbjct: 4   RVLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGIQGFVRHIFSAI----KEIEPTHVA 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D    TFRNE+Y  YK NRP  P+ L+PQ   V+  +  FG   +  + +EADDII 
Sbjct: 60  VCWDMGQETFRNEMYDGYKQNRPAPPDELIPQFDYVKEISHQFGFVNVGKRNYEADDIIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           +      +E   V II+ D+DL+Q ++    ++   K     ++  ++  I ++G+ P++
Sbjct: 120 SLAETYSQE-HEVYIITGDRDLLQCINHNVEVWLIKKGFTIYQRYTLDRFIDEYGLNPQQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++A  GD+ D   G+ GIG KTA  L+Q +G +EN++ N S +    +++ I     
Sbjct: 179 LIDVKAFMGDTADGYSGVKGIGEKTAIKLIQNHGTVENVVNNLSSLTPA-QQKKITNNLN 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
              LS+ L  + T VPI                     K + +   +N + +
Sbjct: 238 HLHLSKSLAEIYTKVPIETD---------------KLFKEMTYAHTLNEILS 274


>gi|309810235|ref|ZP_07704080.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169507|gb|EFO71555.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 214

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 96/218 (44%), Positives = 136/218 (62%), Gaps = 7/218 (3%)

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFR 816
           + H  KI  + + F+   DIH   A +IFG+ N+++V+P MRRHAK +NF I+YGIS + 
Sbjct: 1   MYHTKKI--MLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYG 58

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           LA  L I R EA ++I  YF ++P I +Y++      R+ GY ETI  RR    +I++  
Sbjct: 59  LAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKN 118

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            +IR+  ER AIN+PIQGSAADI + AMI +   LE  KL TKM+LQIHDEL+F+VP EE
Sbjct: 119 FNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEE 178

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +     +++  M++A      L VPL  +    +NW E
Sbjct: 179 LDLIKTLVLKIMQQAA----QLDVPLIADANWGHNWYE 212


>gi|27468048|ref|NP_764685.1| putative 5'-3' exonuclease [Staphylococcus epidermidis ATCC 12228]
 gi|57866934|ref|YP_188589.1| 5'-3' exonuclease [Staphylococcus epidermidis RP62A]
 gi|251810870|ref|ZP_04825343.1| 5'-3' exonuclease [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876124|ref|ZP_06284991.1| 5'-3' exonuclease, SAM C-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366589|ref|ZP_06613266.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315593|gb|AAO04727.1|AE016747_224 putative 5'-3' exonuclease [Staphylococcus epidermidis ATCC 12228]
 gi|57637592|gb|AAW54380.1| 5'-3' exonuclease, putative [Staphylococcus epidermidis RP62A]
 gi|251805550|gb|EES58207.1| 5'-3' exonuclease [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295149|gb|EFA87676.1| 5'-3' exonuclease, SAM C-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319358|gb|EFE59727.1| 5'-3' exonuclease [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329731550|gb|EGG67912.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU144]
 gi|329735214|gb|EGG71506.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU045]
 gi|329737280|gb|EGG73534.1| 5'-3' exonuclease [Staphylococcus epidermidis VCU028]
          Length = 292

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 146/292 (50%), Gaps = 28/292 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            + LVDG + ++R FYAT L ++      G+P N I GF   ++  +    KE   +H A
Sbjct: 4   RVLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGIQGFVRHIFSAI----KEIEPTHVA 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D    TFRNE+Y  YK NRP  P+ L+PQ   V+  +  FG   +  + +EADDII 
Sbjct: 60  VCWDMGQETFRNEMYDGYKQNRPAPPDELIPQFDYVKEISHQFGFVNVGKRNYEADDIIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           +      +E   V II+ D+DL+Q ++    ++   K     ++  ++  I ++G+ P++
Sbjct: 120 SLAETYSQE-HEVYIITGDRDLLQCINHNVEVWLIKKGFTIYQRYTLDRFIDEYGLNPQQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++A  GD+ D   G+ GIG KTA  L+Q +G +EN++ N S +    +++ I     
Sbjct: 179 LIDVKAFMGDTADGYSGVKGIGEKTAIKLIQNHGTVENVVNNLSSLTPA-QQKKITNNLN 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
              LS+ L  + T VPI                     K + +   +N + +
Sbjct: 238 HLHLSKSLAEIYTKVPIETD---------------KLFKEMTYAHTLNEILS 274


>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
 gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 110/333 (33%), Positives = 165/333 (49%), Gaps = 28/333 (8%)

Query: 668 IKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I ++ E   +  + S +   L +  I+ +  RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 500 IASLCEVCSIDSLISNFILPLQSSDISGKGGRVHCSLNI-NTETGRLSARRPNLQNQPAL 558

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR+AFI+ P   LI ADY Q+ELRILAH+A    +   F+   D H   A  ++
Sbjct: 559 EKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 618

Query: 787 GVNIEKVSPQM--------------------------RRHAKTINFSIIYGISPFRLATQ 820
               E +  +                           RR AK +NFSI YG +P  L+  
Sbjct: 619 PHIREAIEKKQVLLEWYPQPGENKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRD 678

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            ++  +EA + +  ++     + ++ +  K   R+NG V T+ GR   +  +    SS+R
Sbjct: 679 WKVSVAEAKETVNLWYKERKEVLKWQQARKKEARENGRVYTLLGRARVFPSLTDASSSLR 738

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAIN P+QGSAAD+   AM+ + K+    +L  K+LLQ+HDE++ E P E    A
Sbjct: 739 GHVERAAINTPVQGSAADVAMCAMLEISKNTRLQELGWKLLLQVHDEVILEGPTESAEVA 798

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             I+V  M K    K  L V L V+ K + NW 
Sbjct: 799 KAIVVGCMSKPFGGKNFLNVDLAVDSKCAQNWY 831



 Score = 94.3 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 105/293 (35%), Gaps = 63/293 (21%)

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
               +D  H +   ++I    + D    K       L      D  G++ L +  L    
Sbjct: 83  EETPID--HGEITCLSIYCGPEADFGHGKSCIWVDVL------DGGGRDLLNEFAL---- 130

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASI-- 508
            FFE+    K+ HN  +D  V+  YG S+ GF  D M M+ + DS R     + + ++  
Sbjct: 131 -FFEDPDIKKVWHNYSFDNHVIENYGFSVSGFHADTMHMARLWDSSRRLKGGYSLEALTG 189

Query: 509 ---AQKWLSYTRKEILKS-------RKSSI-------------PIDKISDSQVQE---HA 542
                +      KE++          K  +             P++++   + +    ++
Sbjct: 190 DQKVMRGAGSCYKELIGKVSMKTIFGKKKLKKDGSEGKMTIIAPVEELQREEREPWICYS 249

Query: 543 IENSNVILQLWLLLRPKLIV------------EKLLHVYERLDKPMIDVVSQMEITGIQI 590
             ++   LQL+  +  +L              + +   Y+   +P  +++ +ME  G+ +
Sbjct: 250 ALDAISTLQLYKSMESELSKMPWNLDGKRVFQKSMFDFYQEYWQPFGEILVRMETEGMLV 309

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLS------GEKFNLSSPKQLGDILFTKL 637
           D+  L +V                + +       +  N+ S  QL  +LF  +
Sbjct: 310 DRAYLAEVEKVAKAEQEVAANRFRNWACKYCPDAKYMNVGSDTQLRQLLFGGV 362


>gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA
            polymerase [Arabidopsis thaliana]
 gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
          Length = 1050

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 105/333 (31%), Positives = 165/333 (49%), Gaps = 30/333 (9%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I ++ E   +  + S +   L  ++++ +  RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 718  IASLCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPAL 776

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++ P   L+ ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 777  EKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMY 836

Query: 787  GVNIEKV---------SPQ-----------------MRRHAKTINFSIIYGISPFRLATQ 820
                E V          P+                  RR AK +NFSI YG +   L+  
Sbjct: 837  PHVREAVENGQVILEWHPEPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRD 896

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA + +  +++    + ++ E  K    ++GYV T+ GR   +    S   + R
Sbjct: 897  WKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLTLLGRSRRFPA--SKSRAQR 954

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
            N  +RAAIN P+QGSAAD+   AM+ +  + +  KL  ++LLQIHDE++ E P E    A
Sbjct: 955  NHIQRAAINTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQIHDEVILEGPIESAEIA 1014

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K    +  L V L V+ K + NW 
Sbjct: 1015 KDIVVDCMSKPFNGRNILSVDLSVDAKCAQNWY 1047



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 142/403 (35%), Gaps = 94/403 (23%)

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           V D      KG  I+  +  D +  T+  +  +   SK+     P  +     +   +  
Sbjct: 208 VGDNMDVNPKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVL 267

Query: 363 INNDSYTKIVNTKDIQQWVQKLETI---GSASFKIITDTMDAF------HSKPIAIAIST 413
           I       + N +  +  V KL         S       ++        H + I  +I  
Sbjct: 268 I-------VDNVQAAKDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYC 320

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             + D  + K              D  G+N   +E+L+  K +FE+    K+ HN  +D 
Sbjct: 321 GPEADFGNGKSC---------IWVDVLGENG--REVLAEFKPYFEDSFIRKVWHNYSFDS 369

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASI---------------AQKWLS 514
            ++  +GI + GF  D M M+ + DS R     + + ++               A+    
Sbjct: 370 HIIRNHGIEISGFHADTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGK 429

Query: 515 YTRKEILKSRKSSI-----------PIDKISDSQVQE---HAIENSNVILQLWLLLRPKL 560
            + K I   RK              P++++     +    ++  ++   L+L+  +  KL
Sbjct: 430 ISMKTIFGKRKLKKDGSEGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKL 489

Query: 561 IVEK------------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
            +              +L  Y    +P  +++ +ME  GI +D++ L ++     + +  
Sbjct: 490 QLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKMEAEGILVDREYLAEI-----EKVAK 544

Query: 609 LEENIYDLSGEKF--------------NLSSPKQLGDILFTKL 637
            E+    ++G +F              N+ S  QL  + F  +
Sbjct: 545 AEQQ---VAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 584


>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
 gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
 gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
          Length = 1049

 Score =  254 bits (648), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 105/333 (31%), Positives = 165/333 (49%), Gaps = 30/333 (9%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I ++ E   +  + S +   L  ++++ +  RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 717  IASLCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPAL 775

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++ P   L+ ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 776  EKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMY 835

Query: 787  GVNIEKV---------SPQ-----------------MRRHAKTINFSIIYGISPFRLATQ 820
                E V          P+                  RR AK +NFSI YG +   L+  
Sbjct: 836  PHVREAVENGQVILEWHPEPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRD 895

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA + +  +++    + ++ E  K    ++GYV T+ GR   +    S   + R
Sbjct: 896  WKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLTLLGRSRRFPA--SKSRAQR 953

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
            N  +RAAIN P+QGSAAD+   AM+ +  + +  KL  ++LLQIHDE++ E P E    A
Sbjct: 954  NHIQRAAINTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQIHDEVILEGPIESAEIA 1013

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K    +  L V L V+ K + NW 
Sbjct: 1014 KDIVVDCMSKPFNGRNILSVDLSVDAKCAQNWY 1046



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 142/403 (35%), Gaps = 94/403 (23%)

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           V D      KG  I+  +  D +  T+  +  +   SK+     P  +     +   +  
Sbjct: 207 VGDNMDVNPKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVL 266

Query: 363 INNDSYTKIVNTKDIQQWVQKLETI---GSASFKIITDTMDAF------HSKPIAIAIST 413
           I       + N +  +  V KL         S       ++        H + I  +I  
Sbjct: 267 I-------VDNVQAAKDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYC 319

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             + D  + K              D  G+N   +E+L+  K +FE+    K+ HN  +D 
Sbjct: 320 GPEADFGNGKSC---------IWVDVLGENG--REVLAEFKPYFEDSFIRKVWHNYSFDS 368

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASI---------------AQKWLS 514
            ++  +GI + GF  D M M+ + DS R     + + ++               A+    
Sbjct: 369 HIIRNHGIEISGFHADTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGK 428

Query: 515 YTRKEILKSRKSSI-----------PIDKISDSQVQE---HAIENSNVILQLWLLLRPKL 560
            + K I   RK              P++++     +    ++  ++   L+L+  +  KL
Sbjct: 429 ISMKTIFGKRKLKKDGSEGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKL 488

Query: 561 IVEK------------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
            +              +L  Y    +P  +++ +ME  GI +D++ L ++     + +  
Sbjct: 489 QLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKMEAEGILVDREYLAEI-----EKVAK 543

Query: 609 LEENIYDLSGEKF--------------NLSSPKQLGDILFTKL 637
            E+    ++G +F              N+ S  QL  + F  +
Sbjct: 544 AEQQ---VAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 583


>gi|242242723|ref|ZP_04797168.1| 5'-3' exonuclease [Staphylococcus epidermidis W23144]
 gi|242233859|gb|EES36171.1| 5'-3' exonuclease [Staphylococcus epidermidis W23144]
          Length = 292

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 146/292 (50%), Gaps = 28/292 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            + LVDG + ++R FYAT L ++      G+P N I GF   ++  +    KE   +H A
Sbjct: 4   RVLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGIQGFVRHIFSAI----KEIEPTHVA 59

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V +D    TFRNE+Y  YK NRP  P+ L+PQ   V+  +  FG   +  + +EADDII 
Sbjct: 60  VCWDMGQETFRNEMYDGYKQNRPAPPDELIPQFDYVKEISHQFGFVNVGKRNYEADDIIG 119

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178
           +      +E   V II+ D+DL+Q ++    ++   K     ++  ++  I ++G+ P++
Sbjct: 120 SLAETYSQE-HEVYIITGDRDLLQCINHNVEVWLIKKGFTIYQRYTLDRFIDEYGLNPQQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++ ++A  GD+ D   G+ GIG KTA  L+Q +G +EN++ N S +    +++ I     
Sbjct: 179 LIDVKAFMGDTADGYSGVKGIGEKTAIKLIQNHGTVENVVNNLSSLTPA-QQKKITNNLN 237

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
              LS+ L  + T VPI                     + + +   +N + +
Sbjct: 238 HLHLSKSLAEIYTKVPIETD---------------KLFEEMTYAHTLNEILS 274


>gi|167899174|ref|ZP_02486575.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 257

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 5/247 (2%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RK+  A + A +FD    TFR+++Y DYKA RP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAYRPPMPPDLALQIEPIHTAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + I+G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           V+ K+G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK  
Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG- 179

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLE----HLILEDCNGPRLISFLKALEFTK 283
              +N+    +   L+RKLV + T   +   +E     L  +      L        F  
Sbjct: 180 VVGDNLRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKT 239

Query: 284 LINRVAT 290
            +  + +
Sbjct: 240 WLRELDS 246


>gi|74228402|dbj|BAE24040.1| unnamed protein product [Mus musculus]
          Length = 299

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 97/275 (35%), Positives = 144/275 (52%), Gaps = 37/275 (13%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +R AF+  P   +++ADYSQ+ELRILAH+++   L QV     D+ R +AAE   +  + 
Sbjct: 23  MRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDA 82

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           V   +R+HAK I + IIYG+    L  Q+ I  ++AA YI  +  R+ GI+ ++  T   
Sbjct: 83  VGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKN 142

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL- 911
            R+NG+VETI GRR +   I       +   ER AIN  +QGSAADI + A +++ K L 
Sbjct: 143 CRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLE 202

Query: 912 ------EDHKLATKM--------------------------LLQIHDELVFEVPEEEITT 939
                 + H     M                          +LQ+HDEL++EV EE++  
Sbjct: 203 TFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQ 262

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +QI+ + ME A    I L V LKV +K+  +W E
Sbjct: 263 VAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 293


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/343 (31%), Positives = 162/343 (47%), Gaps = 36/343 (10%)

Query: 668 IKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQ----- 721
           I  + E   +  + S +   L N  I     RVH   ++ +T TGRL++  PNLQ     
Sbjct: 446 IAALCELSSIDTLISNFIQPLQNGQILGPDGRVHCSLNI-NTETGRLSARRPNLQASLQR 504

Query: 722 ------NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
                 N P       KIR+AFI+PP K LI ADY Q+ELRILAH++    + + FE   
Sbjct: 505 SSFLNINQPALEKDRYKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGG 564

Query: 776 DIHRMVAAEIFGVNIEKVS-----------------------PQMRRHAKTINFSIIYGI 812
           D H   A  ++    + V                           RR AK +NFSI YG 
Sbjct: 565 DFHSRTALNMYPHVRKAVETGEVLLEWSGEGKSPVPLLKDKFGSERRKAKMLNFSIAYGK 624

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           +   L+   ++   EA   +  +++    + E+   T    R    V T+ GR  H  +I
Sbjct: 625 TAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTDTIERARITKRVHTLLGRSRHLPDI 684

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           N+  S +R   ERAAIN P+QGSAAD+   AM+ + ++    +L  K++LQ+HDE++ E 
Sbjct: 685 NTSISVLRGHLERAAINTPVQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEG 744

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           P E +  A +I+V  M      +  L+V L V+   + +W E 
Sbjct: 745 PSESVEEAQEIVVKCMSFPFEGENFLKVNLDVDADHAKSWYEA 787



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 106/310 (34%), Gaps = 53/310 (17%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI-DL 431
           + + + + + +       +       +D     P+            T F +      D 
Sbjct: 11  SAEKVVKLLMEKYKDEVHACDTEVADIDVKKESPVG-------HGKLTCFSIYCGVNVDF 63

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIM 490
               S+           IL   + +FEN    KI HN  +DK +L  YGI   G + D M
Sbjct: 64  GGGKSRVWVDLLNGGPGILDVFRPYFENAEIKKIWHNYSFDKHILGNYGIKAAGFYADTM 123

Query: 491 LMSYVLDSGRS--SHDIASI-----------------AQKWL----SYTRKEILKSRKSS 527
            ++ + DS R    + + ++                 + K L    +  +       K  
Sbjct: 124 HLARLWDSARGGLGYSLEALTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVI 183

Query: 528 IPIDKI-----SDSQVQEHAIENSNVILQLWLLLRPKLIVE----------KLLHVYERL 572
            P++++     +  +   ++  +S     LW  L+ KL+             +   YE  
Sbjct: 184 PPVEELQTSKDTRDKWIYYSAHDSVCTWHLWSSLKKKLLKASWYMEGDKRGNMYQFYELY 243

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSA-EISKN---LLSLEENIYDL--SGEKFNLSSP 626
            +   DV+ +ME  G+++D   L +V    +++    +   ++            N+ S 
Sbjct: 244 WRHFGDVLVRMEAEGMRVDTVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMYMNVCSD 303

Query: 627 KQLGDILFTK 636
            Q+  ILF  
Sbjct: 304 VQIRQILFGG 313


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 108/343 (31%), Positives = 162/343 (47%), Gaps = 36/343 (10%)

Query: 668 IKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQ----- 721
           I  + E   +  + S +   L N  I     RVH   ++ +T TGRL++  PNLQ     
Sbjct: 446 IAALCELSSIDTLISNFIQPLQNGQILGPDGRVHCSLNI-NTETGRLSARRPNLQASLQR 504

Query: 722 ------NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
                 N P       KIR+AFI+PP K LI ADY Q+ELRILAH++    + + FE   
Sbjct: 505 SSFLNINQPALEKDRYKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGG 564

Query: 776 DIHRMVAAEIFGVNIEKVS-----------------------PQMRRHAKTINFSIIYGI 812
           D H   A  ++    + V                           RR AK +NFSI YG 
Sbjct: 565 DFHSRTALNMYPHVRKAVETGEVLLEWSGEGKSPVPLLKDKFGSERRKAKMLNFSIAYGK 624

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
           +   L+   ++   EA   +  +++    + E+   T    R    V T+ GR  H  +I
Sbjct: 625 TAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTDTIERARITKRVHTLLGRSRHLPDI 684

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           N+  S +R   ERAAIN P+QGSAAD+   AM+ + ++    +L  K++LQ+HDE++ E 
Sbjct: 685 NTSISVLRGHLERAAINTPVQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEG 744

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           P E +  A +I+V  M      +  L+V L V+   + +W E 
Sbjct: 745 PSESVEEAQEIVVKCMSFPFEGENFLKVNLDVDADHAKSWYEA 787



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 105/310 (33%), Gaps = 53/310 (17%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI-DL 431
           + + + + + +       +       +D     P+            T F +      D 
Sbjct: 11  SAEKVVKLLMEKYKDEVHACDTEVADIDVKKESPVG-------HGKLTCFSIYCGVNVDF 63

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIM 490
               S+           IL   + +FEN    KI HN  +DK +L  YGI   G + D M
Sbjct: 64  GGGKSRVWVDLLNGGPGILDVFRPYFENAEIKKIWHNYSFDKHILGNYGIKAAGFYADTM 123

Query: 491 LMSYVLDSGRS--SHDIASI-----------------AQKWL----SYTRKEILKSRKSS 527
            ++ + DS R    + + ++                 + K L    +  +       K  
Sbjct: 124 HLARLWDSARGGLGYSLEALTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVI 183

Query: 528 IPIDKI-----SDSQVQEHAIENSNVILQLWLLLRPKLIVE----------KLLHVYERL 572
            P++++     +  +   ++  +S     LW  L+ KL              +   YE  
Sbjct: 184 PPVEELQTSKDTRDKWIYYSAHDSVCTWHLWSSLKKKLQKASWYMEGDKRGNMYQFYELY 243

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSA-EISKN---LLSLEENIYDL--SGEKFNLSSP 626
            +   DV+ QME  G+++D   L +V    +++    +   ++            N+ S 
Sbjct: 244 WRHFGDVLVQMEAEGMRVDTVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMYMNVCSD 303

Query: 627 KQLGDILFTK 636
            Q+  ILF  
Sbjct: 304 VQIRQILFGG 313


>gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 1035

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   + K+ S +   L  +HI+ +  R+H   ++ +T TGRL++  P+LQN P  
Sbjct: 701  IAALCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNI-NTETGRLSARTPSLQNQPAL 759

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++ P   LI ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 760  EKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMY 819

Query: 787  GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
                + V  +                           RR AK +NFSI YG +   L+  
Sbjct: 820  QHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQD 879

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
              +   EA D +K +      I  + +K K    +   V T+ GR   +  +       +
Sbjct: 880  WNVEVREARDTLKLWHRDRKEISAWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAGPGQK 939

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
            +  ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P E    A
Sbjct: 940  SHVERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEA 999

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K       L+V L V+ K + +W 
Sbjct: 1000 KAIVVECMSKPFYGTNILKVDLAVDAKYAKSWY 1032



 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 66/400 (16%), Positives = 136/400 (34%), Gaps = 80/400 (20%)

Query: 312 KGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS---- 367
            G   E       T+++S       +T+ +  +  P K   +R+ +     I + +    
Sbjct: 179 DGSKEEIPWHDSVTVESSLPKVSKSETTLVVDKAIPNKKEHKRITRKVTLNIPDKASLST 238

Query: 368 ------------YTKIV--NTKDIQQWVQKLETIGSASF----KIITDTMDAFHSKPIA- 408
                       Y K++  +  +  + V KL T     F          +D     P+  
Sbjct: 239 ESKNARKLLATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDVKEETPVGH 298

Query: 409 ---IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              I  S      D          D     +          +++L     FFE+    K+
Sbjct: 299 GEVICFSIYSGNSD-------GEADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKV 351

Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASIA--QKWLSYTRKE 519
            HN  +D  V+   GI + GF  D M ++ + DS R     + +  +    + ++   K+
Sbjct: 352 WHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKD 411

Query: 520 ILKSRK-------------------SSIPIDKISDSQVQE------HAIENSNVILQLWL 554
           I K+ K                    +I I+ +   Q ++      ++  +S   L+L+ 
Sbjct: 412 IHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICYSSLDSMSTLKLYE 471

Query: 555 LLRPKLIVEK----------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            L+ KL  ++          +   YE   +P   ++ +ME  G+ +D+  L ++      
Sbjct: 472 SLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMETEGMFVDRAYLSEIEKTAVV 531

Query: 605 NLLSLEENIYDLSGEK------FNLSSPKQLGDILFTKLK 638
                 +     + +        N++S  Q+  + F  +K
Sbjct: 532 ERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIK 571


>gi|239636884|ref|ZP_04677883.1| DNA polymerase I [Staphylococcus warneri L37603]
 gi|239597558|gb|EEQ80056.1| DNA polymerase I [Staphylococcus warneri L37603]
          Length = 292

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 137/259 (52%), Gaps = 13/259 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           N + LVDG + ++R F+AT L ++      G+P N I GF   ++  +   +     +H 
Sbjct: 3   NKVLLVDGMALLFRHFFATSLHNQFMYNSKGVPTNGIQGFVRHIFSAIHEIQ----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV +D    TFRN+++  YK NR   PE L+PQ   V+  ++ FG   I +  +EADD+I
Sbjct: 59  AVCWDMGQSTFRNDMFEGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVTNYEADDVI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       +   V II+ D+DL+Q ++    ++   K      +  +    +++ + P+
Sbjct: 119 GTLAQTYSTDN-DVYIITGDRDLLQCINENVEVWLIKKGFNIYNRYTLHRFNEEYELAPK 177

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++ ++A  GD+ D   G+ GIG KTA  L+Q+YG++E ++     +    +R+ I +  
Sbjct: 178 QLIDIKAFMGDTADGYAGVKGIGEKTALKLIQQYGSVEEVINQIDALTPG-QRKKINDNI 236

Query: 238 ETARLSRKLVMLRTDVPIT 256
               LS++L  + T+VPI 
Sbjct: 237 NELHLSKRLAEIHTNVPID 255


>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
          Length = 885

 Score =  253 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 108/333 (32%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I  + E   +  + S +   L  NHI+    R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 551 IAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNI-NTETGRLSARTPNLQNQPAL 609

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR+AF++ P   LI ADY Q+ELRILAH+A    +   F+   D H   A  ++
Sbjct: 610 EKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMY 669

Query: 787 GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
               + V  +                           RR AK +NFSI YG +P  LA  
Sbjct: 670 QHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARD 729

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            ++   EA D +K ++     +  +  K K   ++   V T+ GR   +  +    S  R
Sbjct: 730 WKVSVKEAKDTLKLWYRDRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQR 789

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P E    A
Sbjct: 790 GHIERAAINAPVQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLA 849

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             I+V  M K       L V L V+ K + NW 
Sbjct: 850 KSIVVECMSKPFYGTNILNVELAVDAKCAQNWY 882



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 129/378 (34%), Gaps = 63/378 (16%)

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND-SYTKIVNT 374
           +ET +  D   +        + T+K   + +P K  + +  K ++  +        +V+ 
Sbjct: 58  VETSLQFDDKARDGYDGDEHECTAKNTVQDSPAKAPMSKESKDARKALATVYDKVLVVDN 117

Query: 375 KDIQQWVQKLETIGSASF----KIITDTMDAFHSKPIA----IAISTLDQKDDTSFKVET 426
               + V +L T    +F          +D     P++    I  S      D       
Sbjct: 118 VKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVICFSIYSGNSDAE----- 172

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D     +          +++L     FFE+    K+ HN  +D  V+  YGI + GF
Sbjct: 173 --ADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENYGIKVAGF 230

Query: 487 E-DIMLMSYVLDSGRS---SHDIASIAQKW--LSYTRKEILKSRKSS------------- 527
             D M ++ + DS R     + +  +      +    KE+ K  K S             
Sbjct: 231 HADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKD 290

Query: 528 ------IPIDKISDSQVQE------HAIENSNVILQLWLLLRPKLIVEK----------L 565
                 I ++ +   Q  +      ++  +S   L+L+  L+ KL  +           +
Sbjct: 291 GSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSM 350

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS------GE 619
              YE   +P   ++ +ME  G+ +D+  L ++            +     +       +
Sbjct: 351 YDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAK 410

Query: 620 KFNLSSPKQLGDILFTKL 637
             N++S  Q+  + F  +
Sbjct: 411 YMNVNSDTQIRQLFFGGI 428


>gi|254524363|ref|ZP_05136418.1| exodeoxyribonuclease IX [Stenotrophomonas sp. SKA14]
 gi|219721954|gb|EED40479.1| exodeoxyribonuclease IX [Stenotrophomonas sp. SKA14]
          Length = 311

 Score =  253 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 138/288 (47%), Gaps = 12/288 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+  R      H A+ FD
Sbjct: 10  LYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPR----HIAIAFD 65

Query: 67  -YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                 FR+ +Y  YKANR   PE L  Q    +    A G+  +    +EADD+I +  
Sbjct: 66  EALDSGFRHRLYAAYKANRDPAPEALKRQFVHCKALCAALGLVVLAHHDYEADDLIGSAL 125

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           +   +      IIS DKDL QL+      +D  + ++ D+  V  + G+   ++    AL
Sbjct: 126 HQ-HRHSHRGVIISADKDLSQLLLDHDEQWDYARNQRWDVAGVKARHGVHAHQIADYLAL 184

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEYAET 239
            GD++DNIPG+ G+G K+AA+LL  +G+++ +      +   + R        + E  E 
Sbjct: 185 CGDAVDNIPGVSGVGSKSAAVLLAHFGSMDALYERLDEVPFLRLRGAAQMAVRLREQREH 244

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           A L R+L  +  D P+      L+ +  +   L    + L F  +  R
Sbjct: 245 ALLWRQLTTIALDAPLEGSQPGLLRQAADPELLGGLCQTLRFGPMTRR 292


>gi|190572893|ref|YP_001970738.1| putative exodeoxyribonuclease [Stenotrophomonas maltophilia K279a]
 gi|190010815|emb|CAQ44424.1| putative exodeoxyribonuclease [Stenotrophomonas maltophilia K279a]
          Length = 311

 Score =  253 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 140/288 (48%), Gaps = 12/288 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L+LVD S +++RA+++ P   +   G P NA+ GF   L  LL+  R      H A+ FD
Sbjct: 10  LYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPR----HIAIAFD 65

Query: 67  YPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
               + FR+ +YP YKANR   PE L  Q    +    A G+  +    +EADD+I +  
Sbjct: 66  EALDSGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHEYEADDLIGS-A 124

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               +      IIS DKDL QL+      +D  + ++ ++  V  + G+   ++    AL
Sbjct: 125 LHVHRGSHRGVIISADKDLSQLLLDHDEQWDYARNQRWNVAGVKARHGVHAHQIADYLAL 184

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN------ILEYAET 239
            GD++DNIPGI G+G K+AA+LL  +G+++ +      +   + R        + E  E 
Sbjct: 185 CGDAVDNIPGISGVGSKSAAVLLAHFGSMDALYERLDEVPFLRLRGAAQMAVRLREQREH 244

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           A+L R+L  +  D P+      L+ +  +   L    + L F  +  R
Sbjct: 245 AQLWRQLTTIALDAPLEGSQPGLLRQTADPELLGGLCQTLRFGPMTRR 292


>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
 gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
          Length = 963

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 108/334 (32%), Positives = 167/334 (50%), Gaps = 29/334 (8%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I ++ E   +  + S +   L  ++++ +  RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 628 IASLCEVCSIDSLISNFILPLQGSNVSGKRGRVHCSLNI-NTETGRLSARRPNLQNQPAL 686

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR+AFI+ P   LI ADY Q+ELRILAH+A    + + F+   D H   A  ++
Sbjct: 687 EKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMY 746

Query: 787 GVNIEKVSP--------------------------QMRRHAKTINFSIIYGISPFRLATQ 820
               E V                              RR AK +NFSI YG +P  LA  
Sbjct: 747 PHIHEAVDKGEVLLEWDPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLARD 806

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            ++   EA + +  ++     + ++ E  K   R++G V T+ GR   +  I+   ++ +
Sbjct: 807 WKVSIEEAKETVNLWYRERQEVLKWQEARKKEAREDGRVHTLLGRARVFPSISHASNAQK 866

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAIN P+QGSAAD+   AM+ + ++    +L  K+LLQIHDE++ E P E    A
Sbjct: 867 RHIERAAINTPVQGSAADVAMCAMLQISRNKRLKELGWKLLLQIHDEVILEGPTESAVVA 926

Query: 941 SQIIVHSMEKACLPKIN-LRVPLKVNIKVSNNWQ 973
             I++  M K     +N L+V L V+ K + NW 
Sbjct: 927 KDIVIECMSKPFFNGVNILKVDLSVDAKCAENWY 960



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 74/477 (15%), Positives = 162/477 (33%), Gaps = 97/477 (20%)

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           QK   + ++E      LS  L  +  D      ++    +  +  RL  F        L 
Sbjct: 54  QKLVPKQVIENKRPGSLS--LNNISRDSAQVASVDKTNNQAIDRKRLNGF-------SLS 104

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
             +      D +    ++ +        I        +  +   + +++ D     N+++
Sbjct: 105 KSLELDAQTDTSLSAKILGNWKEKTFNEIEDIGVDQIEHHLTDGKLAAVGDAEKFSNTKE 164

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET---IGSASFKIITDTMDAF 402
             +   ++R        I       + +       V+KL         +       +D  
Sbjct: 165 ASRHPDVKRRLTSIFGKIL-----VVNDMSMADGIVKKLTNEYRHLIHACDTEVAKIDVK 219

Query: 403 HSKPIA----IAISTLDQKD-DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
              P+     I  S     + D       I++D+      D  G++ L K      K FF
Sbjct: 220 QETPVGHGEIICFSIYSGPEADFGNGTSCIWVDV-----LDGGGRDLLVK-----FKPFF 269

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASI----- 508
           EN    K+ HN  +DK V+  Y + + GF  D M M+ + +S R     + + ++     
Sbjct: 270 ENPEIKKVWHNYSFDKHVIQNYEVPVCGFHADTMHMARLWNSSRRTEGGYSLEALTGDKR 329

Query: 509 AQKWLSYTRKEILKS-------RKSSI-------------PIDKISDSQVQE---HAIEN 545
                    + ++          K+ +             P++++   + +    ++  +
Sbjct: 330 VMSGAQSCFEGLIGKVSMKTIFGKNKLKKDGSEGKMITVAPVEELQREEREPWICYSALD 389

Query: 546 SNVILQLWLLLRPKL-----------IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +    QL+  L+ KL           + + +L  Y+   +P  +++ +ME  GI +D+  
Sbjct: 390 AISTWQLYESLKRKLFHMPWNLNGKPVGKSMLDFYKEYWRPFGELLVRMETEGILVDRAY 449

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKF--------------NLSSPKQLGDILFTKL 637
           L ++     + +  +E+ I   +  +F              N+ S  QL  + F  +
Sbjct: 450 LAEI-----EKVAKVEQEI---AVNRFRNWACKYCPDAKYMNVGSDTQLRQLFFGGI 498


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 106/332 (31%), Positives = 157/332 (47%), Gaps = 29/332 (8%)

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           I ++LE + +  +  T+   L    +    R+HT  ++ +T TGRL+S  PNL N P   
Sbjct: 529 INDLLELKSIEVLLHTFIIPLIELTDPSG-RIHTSINI-NTETGRLSSRNPNLLNQPALE 586

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
               KIR++FI+    KLI ADY Q+ELR+LAH+ K   +   F    D H      +F 
Sbjct: 587 KDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTVITMFP 646

Query: 788 VNIEKVSP------------------------QMRRHAKTINFSIIYGISPFRLATQLRI 823
              E++                            RR AK +NFSI YG +    A   + 
Sbjct: 647 HIQEEIDKGELLIEWDKSKGKAPAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAKDWQC 706

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD-EINSPKSSIRNI 882
              EA   I  +F +   + ++    +   +   + +T+ GR  + +        S  N 
Sbjct: 707 EVKEAQKTIDAWFAQRKEVEQWQYNVRMIAKNQFFTQTLLGRYRYLEKYFQQQTRSYINH 766

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             RAAIN PIQG AADI   AM+ ++K+     L  K+LLQ+HDEL+ E PEE    A +
Sbjct: 767 GLRAAINTPIQGGAADIVIAAMVKIYKNQSLKDLGYKLLLQVHDELILEGPEENAQEALK 826

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I+   ME     +I L +PL+V+ K+ NNW E
Sbjct: 827 IVKELMENPF--EIQLELPLEVDAKIGNNWYE 856



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 16/151 (10%)

Query: 369 TKIVNTKDIQQWVQKLETIGS--ASFKIITDTMDAFHSKPI--AIAISTLDQKDDTSFKV 424
           T + N  D ++ +  L        ++   T  +D     PI     I        ++F  
Sbjct: 52  TIVRNINDAKRVIDILNKYKKQPHAWDTETIDIDVKSETPINRGRLIC------ASAFAG 105

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             +          D+  +N    +++   K +FE+E  LKI HN  +DK +    GI++R
Sbjct: 106 PEVNFGNGPRLFIDNFAQN---SDLIMLFKDYFEDEKILKIWHNYGFDKHIFGNNGINVR 162

Query: 485 GFE-DIMLMSYVLDSGRSS--HDIASIAQKW 512
           GF  D M M+ +LD  +    + +A ++  +
Sbjct: 163 GFFGDTMHMARLLDPSKQPQEYSLAKLSLAY 193



 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE--- 619
             L  +Y +    + ++++++E  G+Q+D D +K +  +  +++   E+N          
Sbjct: 323 NSLGDIYSKYWNSLGEILTELEREGMQVDMDHVKNIKVKAEEDMKQYEQNFIKWVQTTQE 382

Query: 620 ----KFNLSSPKQLGDILFTKLKFPSGAKTK 646
               +FN SS +QL  + F   K     KT 
Sbjct: 383 GDVSQFNCSSTQQLQQLFFAPCKKQQVKKTP 413


>gi|302867440|ref|YP_003836077.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Micromonospora
           aurantiaca ATCC 27029]
 gi|315506150|ref|YP_004085037.1| 5'-3' exonuclease, n-terminal resolvase-like domain protein
           [Micromonospora sp. L5]
 gi|302570299|gb|ADL46501.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Micromonospora
           aurantiaca ATCC 27029]
 gi|315412769|gb|ADU10886.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Micromonospora sp. L5]
          Length = 307

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 141/312 (45%), Gaps = 24/312 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M     + L+D  S  +RA++  P  + +  DG PVNA+ GF +ML +L++  R +    
Sbjct: 1   MAHRQPILLIDSPSLYFRAYFGIPESAAKTGDGQPVNAVRGFLDMLAQLVRTRRPDR--- 57

Query: 60  HFAVIFDYP-AVTFRNEIYPDYKANRPKI------PEMLLPQLPLVRLATQAFGIPAIEI 112
                FD+     +R E+ P YKA+R         P+ L PQ+P++     A GIPA+  
Sbjct: 58  -MICAFDHDWRPAWRVELLPSYKAHRVAPEGGEVVPDTLSPQVPMILEVLDALGIPAVGA 116

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIE 166
            G+EADD++ T      + G  V ++S D+DL QLV                K +  D  
Sbjct: 117 TGYEADDVLGTLA--VTQPG-PVEVVSGDRDLFQLVDDAHPVRLLYVGRGVAKLDDCDDA 173

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK- 225
            V  ++G+P ++     AL GD  D +PG+ G+G KTAA L+  YG L+ IL      + 
Sbjct: 174 AVRTRYGVPADRYADFAALRGDPSDGLPGVAGVGEKTAARLIDRYGGLDGILAALDDPRS 233

Query: 226 --QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
                 R  +    +   ++ K+V + TDVP+      L     +  RL+   +      
Sbjct: 234 GFAPGLRAKLDAARDYLAVAPKVVRVATDVPLPELDPALPTSPADPDRLLELAQRWNLAG 293

Query: 284 LINRVATTYDCD 295
              R+      D
Sbjct: 294 SCRRLVDALAGD 305


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 106/332 (31%), Positives = 157/332 (47%), Gaps = 29/332 (8%)

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           I ++LE + +  +  T+   L    +    R+HT  ++ +T TGRL+S  PNL N P   
Sbjct: 529 INDLLELKSIEVLLHTFIIPLIELTDPSG-RIHTSINI-NTETGRLSSRNPNLLNQPALE 586

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
               KIR++FI+    KLI ADY Q+ELR+LAH+ K   +   F    D H      +F 
Sbjct: 587 KDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTVITMFP 646

Query: 788 VNIEKVSP------------------------QMRRHAKTINFSIIYGISPFRLATQLRI 823
              E++                            RR AK +NFSI YG +    A   + 
Sbjct: 647 HIQEEIDKGELLIEWDKSKGKAPAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAKDWQC 706

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD-EINSPKSSIRNI 882
              EA   I  +F +   + ++    +   +   + +T+ GR  + +        S  N 
Sbjct: 707 EVKEAQKTIDAWFAQRKEVEQWQYNVRMIAKNQFFTQTLLGRYRYLEKYFQQQTRSYINH 766

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
             RAAIN PIQG AADI   AM+ ++K+     L  K+LLQ+HDEL+ E PEE    A +
Sbjct: 767 GLRAAINTPIQGGAADIVIAAMVKIYKNQSLKDLGYKLLLQVHDELILEGPEENAQEALK 826

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           I+   ME     +I L +PL+V+ K+ NNW E
Sbjct: 827 IVKELMENPF--EIQLELPLEVDAKIGNNWYE 856



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 16/151 (10%)

Query: 369 TKIVNTKDIQQWVQKLETIGS--ASFKIITDTMDAFHSKPI--AIAISTLDQKDDTSFKV 424
           T + N  D ++ +  L        ++   T  +D     PI     I        ++F  
Sbjct: 52  TIVRNINDAKRVIDILNKYKKQPHAWDTETIDIDVKSETPINRGRLIC------ASAFAG 105

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             +          D+  +N    +++   K++FE+E  LKI HN  +DK +    GI++R
Sbjct: 106 PEVNFGNGPRLFIDNFAQN---SDLIMLFKEYFEDEKILKIWHNYGFDKHIFGNNGINVR 162

Query: 485 GFE-DIMLMSYVLDSGRSS--HDIASIAQKW 512
           GF  D M M+ +LD  +    + +A ++  +
Sbjct: 163 GFFGDTMHMARLLDPSKQPQEYSLAKLSLAY 193



 Score = 44.6 bits (104), Expect = 0.091,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
               +   + +  +  L  +Y +    + ++++++E  G+Q+D D +K +  +  +++  
Sbjct: 309 TDSDYQTKQNEFGINSLGDIYSKYWNSLGEILTELEREGMQVDMDHVKNIKVKAEEDMKQ 368

Query: 609 LEENIYDLSGE-------KFNLSSPKQLGDILFTKLKFPSGAKTK 646
            E+N              +FN SS +QL  + F   K     KT 
Sbjct: 369 YEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKKQQVKKTP 413


>gi|12043539|emb|CAC19788.1| DNA polymerase 1 [Burkholderia cepacia]
          Length = 224

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 6/226 (2%)

Query: 19  AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYP 78
           A +A P L R  +G P  A+ G  NML ++    RKE  A + A +FD    TFR++ Y 
Sbjct: 5   ALHAMPDL-RGPEGGPTGALYGIVNMLRRM----RKEITAEYSACVFDAKGKTFRDDWYA 59

Query: 79  DYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII 138
           DYKANR  +P+ L  Q+  + +A +A G P + I+G EADD+I T +  AEK G  V + 
Sbjct: 60  DYKANRASMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLSTAAEKRGMNVIVS 119

Query: 139 STDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
           + DKDL QLVS    L +T+  E +D   VI K+G+PPE+++   +L GD++DN+PG+  
Sbjct: 120 TGDKDLAQLVSDHVTLINTMTNETLDRAGVIAKFGVPPERIIDYLSLIGDTVDNVPGVEK 179

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
            G KTA   L ++ +L+ I+ +A  IK     +N+    +   L R
Sbjct: 180 CGPKTALKWLTQFDSLDGIVAHADEIKGA-VGDNLRRALDFLPLGR 224


>gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa]
 gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 107/333 (32%), Positives = 167/333 (50%), Gaps = 28/333 (8%)

Query: 668 IKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I ++ E   +  + S +   L +  ++ ++ RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 500 ISSLCELCSIDSLISNFILPLQSSNLSGKSGRVHCSLNI-NTETGRLSARRPNLQNQPAL 558

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR+AFI+ P   LI ADY Q+ELR+LAH+A    +   F+   D H   A  ++
Sbjct: 559 EKDRYKIRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDAFKAGGDFHSRTAVNMY 618

Query: 787 GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
               E +  +                           RR AK +NFSI YG +P  L+  
Sbjct: 619 PHIREAIEKKRVLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRD 678

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            ++  +EA + +  ++     + ++ +  K   R++G V T+ GR   +  +    SS+R
Sbjct: 679 WKVSVAEAKETVNLWYKERKEVLKWQQARKKEAREDGRVHTLLGRARVFPSLTDASSSLR 738

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAIN P+QGSAAD+   AM+ + K+    +L  K+LLQ+HDE++ E P E    A
Sbjct: 739 GHVERAAINTPVQGSAADVAMCAMLEISKNNRLKELGWKLLLQVHDEVILEGPTESAEVA 798

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             I+V  M K    K  L+V L V+ K + NW 
Sbjct: 799 KAIVVDCMSKPFGGKNFLKVDLAVDAKCAQNWY 831



 Score = 94.3 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 87/241 (36%), Gaps = 50/241 (20%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---S 502
           +++L     FFE+    K+ HN  +D  V+  YGIS+ GF  D M M+ + DS R     
Sbjct: 122 RDLLHEFAPFFESPDIKKVWHNYSFDNHVIENYGISVSGFHADTMHMARLWDSSRRINGG 181

Query: 503 HDIASI-----AQKWLSYTRKEILKS-------RKSSI-------------PIDKISDSQ 537
           + + ++       +      KE++          K  +             P++++    
Sbjct: 182 YSLEALTGDQKVMRGAEPCYKELIGKVSMKNIFGKKKVKKDGSEGKLTTIAPVEELQREA 241

Query: 538 VQE---HAIENSNVILQLWLLLRPKL------------IVEKLLHVYERLDKPMIDVVSQ 582
            +    ++  ++   LQL+  L  +L            + + +   Y    +P  +++ +
Sbjct: 242 REPWICYSALDAISTLQLYKSLESQLSKMPWNMDGKPVLKKSMFDFYLEYWQPFGEILVR 301

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE------KFNLSSPKQLGDILFTK 636
           ME  G+ +D+  L                     +          N+ S  QL  +LF  
Sbjct: 302 METEGMLVDRAYLAVTEKVAKAEQEVAASRFRKWASRYCPDAKYMNVGSDTQLRQLLFGG 361

Query: 637 L 637
           +
Sbjct: 362 I 362


>gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group]
 gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group]
          Length = 560

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 108/333 (32%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I  + E   +  + S +   L  NHI+    R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 226 IAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNI-NTETGRLSARTPNLQNQPAL 284

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR+AF++ P   LI ADY Q+ELRILAH+A    +   F+   D H   A  ++
Sbjct: 285 EKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMY 344

Query: 787 GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
               + V  +                           RR AK +NFSI YG +P  LA  
Sbjct: 345 QHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARD 404

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            ++   EA D +K ++     +  +  K K   ++   V T+ GR   +  +    S  R
Sbjct: 405 WKVSVKEAKDTLKLWYRDRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQR 464

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P E    A
Sbjct: 465 GHIERAAINAPVQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLA 524

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             I+V  M K       L V L V+ K + NW 
Sbjct: 525 KSIVVECMSKPFYGTNILNVELAVDAKCAQNWY 557


>gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group]
          Length = 982

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I  + E   + K+ S +   L  +HI+ +  R+H   ++ +T TGRL++  P+LQN P  
Sbjct: 648 IAALCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNI-NTETGRLSARTPSLQNQPAL 706

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR+AF++ P   LI ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 707 EKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMY 766

Query: 787 GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
               + V  +                           RR AK +NFSI YG +   L+  
Sbjct: 767 QHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQD 826

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             +   EA D +K +      I  + +K K    +   V T+ GR   +  +       +
Sbjct: 827 WNVEVREARDTLKLWHRDRKEISAWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAGPGQK 886

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P E    A
Sbjct: 887 SHVERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEA 946

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             I+V  M K       L+V L V+ K + +W 
Sbjct: 947 KAIVVECMSKPFYGTNILKVDLAVDAKYAKSWY 979



 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/400 (16%), Positives = 136/400 (34%), Gaps = 80/400 (20%)

Query: 312 KGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS---- 367
            G   E       T+++S       +T+ +  +  P K   +R+ +     I + +    
Sbjct: 126 DGSKEEIPWHDSVTVESSLPKVSKSETTLVVDKAIPNKKEHKRITRKVTLNIPDKASLST 185

Query: 368 ------------YTKIV--NTKDIQQWVQKLETIGSASF----KIITDTMDAFHSKPIA- 408
                       Y K++  +  +  + V KL T     F          +D     P+  
Sbjct: 186 ESKNARKLLATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDVKEETPVGH 245

Query: 409 ---IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              I  S      D          D     +          +++L     FFE+    K+
Sbjct: 246 GEVICFSIYSGNSD-------GEADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKV 298

Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASIA--QKWLSYTRKE 519
            HN  +D  V+   GI + GF  D M ++ + DS R     + +  +    + ++   K+
Sbjct: 299 WHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKD 358

Query: 520 ILKSRK-------------------SSIPIDKISDSQVQE------HAIENSNVILQLWL 554
           I K+ K                    +I I+ +   Q ++      ++  +S   L+L+ 
Sbjct: 359 IHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICYSSLDSMSTLKLYE 418

Query: 555 LLRPKLIVEK----------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            L+ KL  ++          +   YE   +P   ++ +ME  G+ +D+  L ++      
Sbjct: 419 SLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMETEGMFVDRAYLSEIEKTAVV 478

Query: 605 NLLSLEENIYDLSGEK------FNLSSPKQLGDILFTKLK 638
                 +     + +        N++S  Q+  + F  +K
Sbjct: 479 ERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIK 518


>gi|318059078|ref|ZP_07977801.1| 5'-3' exonuclease [Streptomyces sp. SA3_actG]
          Length = 309

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/313 (28%), Positives = 150/313 (47%), Gaps = 27/313 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R +++ + 
Sbjct: 1   MTQTPRLMLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDALVAC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPA 109
               +      +R  + P YKA+R            ++P+ L PQ+P++     A GI  
Sbjct: 61  MDADW---RPEWRVSLIPSYKAHRVAEETETGPDEEEVPDTLSPQVPVIEAVLDALGIAR 117

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKI 163
           + + G+EADD+I T    A      V I++ D+DL QLV       +   +K     +  
Sbjct: 118 LGVPGYEADDVIGTLATRA---HGPVDIVTGDRDLFQLVDDARGVRVLYPLKGVGSLQVT 174

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D   + +K+G+       L  L GD  D +PG+PGIG KTAA LL  YG+L+ I   A+ 
Sbjct: 175 DEALLREKYGVDGPGYADLATLRGDPSDGLPGVPGIGEKTAAKLLAAYGDLDGIRAAAAD 234

Query: 224 IKQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKAL 279
              K    +R  ++E A    ++  +V +  D+P+   L+  L  E  +G  L +  +  
Sbjct: 235 PASKITPAQRRRLVESAPYLDVAPAVVRVARDIPVPEDLDERLPDEPRDGEVLTALGERW 294

Query: 280 EFTKLINRVATTY 292
                ++RV  T 
Sbjct: 295 GLGGSLDRVLHTL 307


>gi|167850581|ref|ZP_02476089.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 253

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 5/242 (2%)

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           RK+  A + A +FD    TFR+++Y DYKA+RP +P  L  Q+  +  A +A G P + I
Sbjct: 2   RKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMI 61

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
           +G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + V+ K+
Sbjct: 62  EGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKF 121

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+PPE++V   +L GD++DN+PG+   G KTA   L +YG+L+ ++ +A  IK     +N
Sbjct: 122 GVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKG-VVGDN 180

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLE----HLILEDCNGPRLISFLKALEFTKLINRV 288
           +    +   L+RKLV + T   +   +E     L  +      L        F   +  +
Sbjct: 181 LRRALDFLPLARKLVTVETGCELAPHVESFDASLATDGEGRDALREIFAKYGFKTWLREL 240

Query: 289 AT 290
            +
Sbjct: 241 DS 242


>gi|32491005|ref|NP_871259.1| hypothetical protein WGLp256 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166211|dbj|BAC24402.1| polA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 289

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/284 (33%), Positives = 146/284 (51%), Gaps = 12/284 (4%)

Query: 1   MQKENHLF-LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M+K +    L+DGS ++Y+A++  P +     G  V AI G   M+ K L+        +
Sbjct: 8   MKKLDKFVILIDGSIYLYKAYFGAPNIKNIS-GKSVGAIYGIIKMIKKTLR----LYSTN 62

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
             A++FD    T RN+IY +YK+NR K+PE L  Q+P+++      G     I G E+DD
Sbjct: 63  CVAIVFDSHHNTSRNKIYKNYKSNRKKMPEDLKHQIPIIKNILSFMGFSIFCIDGIESDD 122

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           II T +   E++G  V I + DKD+MQLVS    + +    +  D+  V  K+ I P  +
Sbjct: 123 IIGTMSIKLEQQGKKVFIFTNDKDMMQLVSSNVNIININNYKIYDVIEVYLKYKIFPCSI 182

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR------IKQKKRRENI 233
               AL GD  DNIPGIP IG KTA  LL ++ +L +I  N  +      IK KK   ++
Sbjct: 183 ADYLALVGDCSDNIPGIPRIGEKTAVKLLNKFPSLLDIYNNIRKVDKLTDIKSKKVIYSL 242

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
            +    A L  KL  + T++ I    + +I   C+  +L +  K
Sbjct: 243 KKNKRKAFLYYKLTKINTNIKINFSFKDIIRRSCDKEKLFNLFK 286


>gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1049

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 110/333 (33%), Positives = 163/333 (48%), Gaps = 30/333 (9%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   +  + S +   L  ++++ +  RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 717  IAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPAL 775

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AFI+ P   LI ADY Q+ELRILAH+A    + + F    D H   A  ++
Sbjct: 776  EKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMY 835

Query: 787  GVNIEKVS--------------------------PQMRRHAKTINFSIIYGISPFRLATQ 820
                E V                              RR AK +NFSI YG +   L+  
Sbjct: 836  PHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRD 895

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++ R EA D +  +++    + ++ E  K    Q GYV T+ GR   + E  S   + +
Sbjct: 896  WKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTLLGRARKFPEYRSR--AQK 953

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
            N  ERAAIN P+QGSAAD+   AM+ +  +    +L  K+LLQ+HDE++ E P E    A
Sbjct: 954  NHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENA 1013

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V+ M +    K  L V L V+ K + NW 
Sbjct: 1014 KDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWY 1046



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 108/300 (36%), Gaps = 64/300 (21%)

Query: 393 KIITDTMDAFHSKPI----AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
                 +D     P+     I  S     +         F D       D  G+N   ++
Sbjct: 287 DTEVSRIDVKTETPVDHGEMICFSIYCGSE-------ADFGDGKSCIWVDVLGENG--RD 337

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHD 504
           IL+  K FFE+    K+ HN  +D  ++  YGI + GF  D M M+ + DS R     + 
Sbjct: 338 ILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYS 397

Query: 505 IASI---------------AQKWLSYTRKEILKSRKSSI-----------PIDKISDSQV 538
           + ++               A+ +   + K+I    K              P+ ++     
Sbjct: 398 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDR 457

Query: 539 QE---HAIENSNVILQLWLLLRPKLIVEK------------LLHVYERLDKPMIDVVSQM 583
           +    ++  +S   L+L+  ++ +L  +K            +   Y+   +P  +++++M
Sbjct: 458 EAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKM 517

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS------GEKFNLSSPKQLGDILFTKL 637
           E  G+ +D+D L Q+                + +       +  N+ S  QL  + F  +
Sbjct: 518 ESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGI 577


>gi|225158900|ref|ZP_03725214.1| 5'-3' exonuclease [Opitutaceae bacterium TAV2]
 gi|224802518|gb|EEG20776.1| 5'-3' exonuclease [Opitutaceae bacterium TAV2]
          Length = 298

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 95/294 (32%), Positives = 152/294 (51%), Gaps = 13/294 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG +  YR F+A P L+R  DG P NA+ G+   LW+L+   R         V FD 
Sbjct: 5   LLIDGFNLAYRCFFAIPELTR-SDGFPTNALHGWVKSLWRLIDQERPNG----VRVFFDL 59

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R  + P+YKA R ++PE L+ QLPL++  T+  GI AIE  G E+DD++A     
Sbjct: 60  GGSQDRLALLPEYKAQRAEMPEALVRQLPLIKDLTRLLGITAIEQHGVESDDLLAAQAVT 119

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT-------VKEEKIDIEHVIKKWGIPPEKMV 180
               G  V ++S+DKD  Q+V+    L          +   + D   V++K+G+PP ++ 
Sbjct: 120 LAAAGDNVLVVSSDKDFAQIVNDRITLLLPPPTANPKLGWRRRDTAGVLEKFGVPPAQIA 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              A+ GD+ DNIPG+ G+G KTAA  L E+G L+N+L +A  +K ++ R+ +   A+  
Sbjct: 180 DYLAIVGDTSDNIPGLAGVGPKTAAKWLIEFGTLDNLLAHAGEVKPERFRDPLAAQADAL 239

Query: 241 RLSRKLVM-LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           R +R+L     + +P   P  +  +       L  ++K +E    +      Y+
Sbjct: 240 RRNRRLTTLNLSLLPPPPPGGNAPIAAPQNRALYPWVKQMEMKSPLTETRARYE 293


>gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group]
          Length = 1028

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/333 (30%), Positives = 157/333 (47%), Gaps = 28/333 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   + K+ S +   L  + I+ +  R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 694  IAALCEAFSIDKLISGFIIPLQGDRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPAL 752

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++ P   LI ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 753  EKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMY 812

Query: 787  GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
                + V  +                           RR AK +NFSI YG +   L+  
Sbjct: 813  QHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDTFGAERRKAKMLNFSIAYGKTAVGLSQD 872

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
              +   EA D +K ++     +  + +K K    +   V T+ GR   +  +       +
Sbjct: 873  WNVEVREARDTLKLWYRDRKEVSAWQKKQKALALEKCEVYTLLGRSRQFPNMTHAGPGQK 932

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               ERAAINAP QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P E    A
Sbjct: 933  GHVERAAINAPGQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEA 992

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K       L+V L V+ K + +W 
Sbjct: 993  KSIVVECMSKPFYGTNILKVDLAVDAKYAKSWY 1025



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 113/324 (34%), Gaps = 62/324 (19%)

Query: 370 KIVNTKDIQQWVQKLETIGSASF----KIITDTMDAFHSKPIA----IAISTLDQKDDTS 421
            +V+  +  + V KL T     F          +D     P+     I  S      D  
Sbjct: 249 LVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDVKEETPVGHGEVICFSICSGNSD-- 306

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                   D     +          +++L     FFE+    K+ HN  +D  V+   GI
Sbjct: 307 -----GEADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDNHVIENCGI 361

Query: 482 SMRGFE-DIMLMSYVLDSGRS---SHDIASIA--QKWLSYTRKEILKSRK---------- 525
            + GF  D M ++ + DS R     + +  +    + ++   K+I K+ K          
Sbjct: 362 KVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRK 421

Query: 526 ---------SSIPIDKISDSQVQE------HAIENSNVILQLWLLLRPKLIVEK------ 564
                     +I I+ +   Q ++      ++  +S   L+L+  L+ KL  ++      
Sbjct: 422 KVRKNGSEGKTISIEPVEKLQREDRELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGC 481

Query: 565 ----LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
               +   YE   +P   ++ +ME  G+ +D+  L ++            +     + + 
Sbjct: 482 PRGTMYDFYEEYWRPFGALLVKMETEGMLVDRAYLSEIEKTAVVERKLAADKFRKWASKH 541

Query: 621 ------FNLSSPKQLGDILFTKLK 638
                  N++S  Q+  + F  +K
Sbjct: 542 CPDAKYMNVNSDNQIRQLFFGGIK 565


>gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding /
            DNA-directed DNA polymerase/ nucleic acid binding
            [Arabidopsis thaliana]
 gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana]
 gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana]
 gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana]
 gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1034

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 110/333 (33%), Positives = 163/333 (48%), Gaps = 30/333 (9%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   +  + S +   L  ++++ +  RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 702  IAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPAL 760

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AFI+ P   LI ADY Q+ELRILAH+A    + + F    D H   A  ++
Sbjct: 761  EKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMY 820

Query: 787  GVNIEKVS--------------------------PQMRRHAKTINFSIIYGISPFRLATQ 820
                E V                              RR AK +NFSI YG +   L+  
Sbjct: 821  PHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRD 880

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++ R EA D +  +++    + ++ E  K    Q GYV T+ GR   + E  S   + +
Sbjct: 881  WKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTLLGRARKFPEYRSR--AQK 938

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
            N  ERAAIN P+QGSAAD+   AM+ +  +    +L  K+LLQ+HDE++ E P E    A
Sbjct: 939  NHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENA 998

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V+ M +    K  L V L V+ K + NW 
Sbjct: 999  KDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWY 1031



 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 108/300 (36%), Gaps = 64/300 (21%)

Query: 393 KIITDTMDAFHSKPI----AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
                 +D     P+     I  S     +         F D       D  G+N   ++
Sbjct: 272 DTEVSRIDVKTETPVDHGEMICFSIYCGSE-------ADFGDGKSCIWVDVLGENG--RD 322

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHD 504
           IL+  K FFE+    K+ HN  +D  ++  YGI + GF  D M M+ + DS R     + 
Sbjct: 323 ILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYS 382

Query: 505 IASI---------------AQKWLSYTRKEILKSRKSSI-----------PIDKISDSQV 538
           + ++               A+ +   + K+I    K              P+ ++     
Sbjct: 383 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDR 442

Query: 539 QE---HAIENSNVILQLWLLLRPKLIVEK------------LLHVYERLDKPMIDVVSQM 583
           +    ++  +S   L+L+  ++ +L  +K            +   Y+   +P  +++++M
Sbjct: 443 EAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKM 502

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS------GEKFNLSSPKQLGDILFTKL 637
           E  G+ +D+D L Q+                + +       +  N+ S  QL  + F  +
Sbjct: 503 ESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGI 562


>gi|27904863|ref|NP_777989.1| putative 5'-3' exonuclease [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|38372206|sp|Q89AD1|EX53_BUCBP RecName: Full=5'-3' exonuclease
 gi|27904261|gb|AAO27094.1| putative 5'-3' exonuclease [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 302

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 102/293 (34%), Positives = 148/293 (50%), Gaps = 11/293 (3%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG+S++YRA+YA        +  P  AI G  NML  +L         S+  VIFD 
Sbjct: 11  LLIDGTSYLYRAYYAFLKFKNNFN-KPCGAIYGMLNMLRSMLLK----YPYSNIVVIFDS 65

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
           P  TFRNE++  YK NRPK+P  L  Q+  +    +  GIP I I   EADDII T    
Sbjct: 66  PQKTFRNELFIPYKKNRPKMPNDLKEQILPIHHIIKHIGIPIISIPHVEADDIIGTLATK 125

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
             K+ + + I + DKDL QLV+    +        +D   V KK+GI P+ +  L  L G
Sbjct: 126 LYKKKYFILISTNDKDLAQLVNIHIHVLIGTSNIVLDESKVKKKYGIIPKLIPDLLGLMG 185

Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAETAR 241
           D+ DNIPG+P +G KTA +LL+ +G+LENI  N  +I      K K    N+  Y + A 
Sbjct: 186 DNSDNIPGVPTVGKKTALILLKTFGSLENIYNNIEKIPKCLIKKAKTIYNNLHTYKKLAF 245

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           LS+KL  ++TD+ + I  + + +       + +F    +F      +      
Sbjct: 246 LSQKLATIKTDINVNITTKKIKMLPPCTTEISNFFLHYKFYNWNKLLKQGLWL 298


>gi|193216862|ref|YP_002000104.1| 5'-3' exonuclease, exo domain of DNA polymerase I [Mycoplasma
           arthritidis 158L3-1]
 gi|193002185|gb|ACF07400.1| 5'-3' exonuclease, exo domain of DNA polymerase I [Mycoplasma
           arthritidis 158L3-1]
          Length = 293

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 143/300 (47%), Gaps = 21/300 (7%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +N + ++DG+   YR+++AT     +    +G   NA+ GF N L  L++  +     +H
Sbjct: 2   KNKILVIDGTYLAYRSYFATTYKGVVMANQEGTLTNAVFGFFNTLLTLIKMQK----VTH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD    TFR+E++  YKA R K P     QL  ++    A  I      GFEADDI
Sbjct: 58  VFVAFDSKIKTFRHELFSGYKATRQKAPSDFYVQLNFIQQLLDALNITNFYKDGFEADDI 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPE 177
           IA    I  ++   + I S D+DL QL++P   +     +      +  +  + +   P 
Sbjct: 118 IAKVVSIFSED--EILIHSADQDLNQLINPNVAIIKKNNKGVYFELNANNFGEYYDFLPS 175

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++  +AL GDS DN  G+PGIG K+AA LL EYG LENI  N   IK    +  I    
Sbjct: 176 QVIDYKALVGDSSDNFKGVPGIGPKSAAGLLHEYGTLENIFANIESIKPA-LKAKIEANK 234

Query: 238 ETARLSRKLVMLRTDVPI-TIPLEHLILE----DCNGPRLISFLKALEFTKLINRVATTY 292
           E A   + L  LRTD  I  I  E L++       +   +I   + LE   L NR+    
Sbjct: 235 EEALRDKYLATLRTDFEIPPISHEELLISAITLSPDASYII---RRLELNSLKNRLLELL 291


>gi|220936133|ref|YP_002515032.1| 5'-3' exonuclease [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997443|gb|ACL74045.1| 5'-3' exonuclease [Thioalkalivibrio sp. HL-EbGR7]
          Length = 332

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 96/289 (33%), Positives = 147/289 (50%), Gaps = 14/289 (4%)

Query: 1   MQKENH---LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M   +    L+LVD S +++RA++  P      +G P NA+ GF   L +LL      + 
Sbjct: 1   MTDPDRASPLWLVDSSIYVFRAWFTLPEAITDREGHPANAVTGFGEFLVRLLTR----AA 56

Query: 58  ASHFAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            +     FD     ++R+EIYP+YKANRP  PE L  Q    R    A G PA     +E
Sbjct: 57  PAPVVFAFDESLGQSYRHEIYPEYKANRPPAPESLKRQFRQCRALVTALGFPAFSSPRYE 116

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADDII T T   +  G +V +I+ DKDL QLV P    ++  ++ ++D   V KK G+ P
Sbjct: 117 ADDIIGTLTARQQAAGGSVHLITADKDLTQLVGPGDLWWEFQQDRRLDARGVEKKLGVRP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRR 230
           E++    AL GD +DNIPG+PGIG  TAA +L+ +G+L+ +  +   +        ++  
Sbjct: 177 EQVADQLALAGDKVDNIPGVPGIGMATAARILRRFGDLDTLFADTDEVAKLHIRGARRLA 236

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
           + + E+  + RLSR+L  +  D+        L     +   L + L  L
Sbjct: 237 DLVREHEHSVRLSRRLTGIHCDIEDLPQALDLSPAAPDRAALTALLDQL 285


>gi|145332809|ref|NP_001078270.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|332645360|gb|AEE78881.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 448

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 160/309 (51%), Gaps = 38/309 (12%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA------IAGFCNMLWKLLQNSRKE 55
                + L+DG+S IYRA+Y    L+R + G   +A      +    + L  L+   +  
Sbjct: 114 SSNGRVMLIDGTSIIYRAYYKL--LARLNHGHLAHADGNADWVLTIFSSLSLLIDVLK-- 169

Query: 56  SIASHFAVIFDY------------------PAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
            + SH AV+FD+                    + FR+ +YP YK+NRP  P+ ++  L  
Sbjct: 170 FLPSHVAVVFDHDGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQY 229

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD- 156
           ++ + +A  I  IE+ G EADD+I T    +   GF V ++S DKD  Q++SP+  L   
Sbjct: 230 LKASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRL 289

Query: 157 TVKEEKI---DIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
           T +  ++    +E   KK+G + P + V + AL GD  DNIPG+ GIG   A  L+  +G
Sbjct: 290 TPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFG 349

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDC-- 267
            LEN+L +   IK+ K +E+++  A+ A LS+KL +LR+D+P   +    + L  +    
Sbjct: 350 TLENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPED 409

Query: 268 NGPRLISFL 276
           NG +L S L
Sbjct: 410 NGEKLSSLL 418


>gi|42565846|ref|NP_190773.2| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|145362483|ref|NP_974414.2| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|109946597|gb|ABG48477.1| At3g52050 [Arabidopsis thaliana]
 gi|332645358|gb|AEE78879.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
 gi|332645359|gb|AEE78880.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 425

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 160/309 (51%), Gaps = 38/309 (12%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA------IAGFCNMLWKLLQNSRKE 55
                + L+DG+S IYRA+Y    L+R + G   +A      +    + L  L+   +  
Sbjct: 91  SSNGRVMLIDGTSIIYRAYYKL--LARLNHGHLAHADGNADWVLTIFSSLSLLIDVLK-- 146

Query: 56  SIASHFAVIFDY------------------PAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
            + SH AV+FD+                    + FR+ +YP YK+NRP  P+ ++  L  
Sbjct: 147 FLPSHVAVVFDHDGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQY 206

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD- 156
           ++ + +A  I  IE+ G EADD+I T    +   GF V ++S DKD  Q++SP+  L   
Sbjct: 207 LKASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRL 266

Query: 157 TVKEEKI---DIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
           T +  ++    +E   KK+G + P + V + AL GD  DNIPG+ GIG   A  L+  +G
Sbjct: 267 TPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFG 326

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDC-- 267
            LEN+L +   IK+ K +E+++  A+ A LS+KL +LR+D+P   +    + L  +    
Sbjct: 327 TLENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPED 386

Query: 268 NGPRLISFL 276
           NG +L S L
Sbjct: 387 NGEKLSSLL 395


>gi|297816476|ref|XP_002876121.1| hypothetical protein ARALYDRAFT_485561 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297321959|gb|EFH52380.1| hypothetical protein ARALYDRAFT_485561 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 454

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 161/309 (52%), Gaps = 38/309 (12%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA------IAGFCNMLWKLLQNSRKE 55
                + L+DG+S IYRA+Y    L+R + G   +A      +    + L  L+   +  
Sbjct: 120 SSNGRVMLIDGTSIIYRAYYKL--LARLNHGHLAHADGNADWVLTIFSSLSLLIDVLK-- 175

Query: 56  SIASHFAVIFDY------------------PAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
            + SH AV+FD+                    + FR+ +YP YK+NRP  P+ ++  L  
Sbjct: 176 FLPSHVAVVFDHDGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGLQY 235

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD- 156
           ++ + +A  I  IE+ G EADD+I T    +   GF V ++S DKD  Q++SP+  L   
Sbjct: 236 LKASIKAMSIKVIEVPGVEADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRL 295

Query: 157 TVKEEKI---DIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
           T +  ++    +E   KK+G + P + V + AL GD  DNIPG+ GIG   A  L+  +G
Sbjct: 296 TPRGSEMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFG 355

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDC-- 267
           +LEN+L +   IK+ K +E+++  A+ A LS+KL +LR+D+P   +    + L  +    
Sbjct: 356 SLENLLQSVDEIKEGKIKESLIASADQAILSKKLALLRSDLPDYIVPFDTKDLTFKKPED 415

Query: 268 NGPRLISFL 276
           NG +L S L
Sbjct: 416 NGEKLSSLL 424


>gi|126653099|ref|ZP_01725228.1| putative 5'-3' exonuclease [Bacillus sp. B14905]
 gi|126590104|gb|EAZ84229.1| putative 5'-3' exonuclease [Bacillus sp. B14905]
          Length = 295

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/276 (31%), Positives = 144/276 (52%), Gaps = 13/276 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L +VDG + ++R+F+A        R  DG P N   GF   +      ++    
Sbjct: 1   MTTKPKLLIVDGMALLFRSFFASAAMGHFIRLADGTPTNGAQGFVRHVL----TAQSLMK 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV +D  A TFRN+++  YKANRP  PE +LPQ  + +  +   G     ++G EA
Sbjct: 57  PTHMAVCWDMGAHTFRNDLFDGYKANRPAPPEEMLPQFDMAKNLSLQMGWQNFGVKGMEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I +     + E   +T+IS DKDL+QL+ P+T +    K     +        +++ 
Sbjct: 117 DDLIGSMITKWQDE-AEITVISGDKDLLQLLRPSTEIAFMKKGYTEYDIYTHGRFKEEYS 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +   ++A  GD+ D  PG+ GIG K A  L+Q YG+++++L +   +K   +R  I
Sbjct: 176 IEPAQFAQVKAFMGDTSDGYPGVKGIGPKQALTLIQTYGSIDSVLASLGELKPG-QRTKI 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
            ++ +  +LS +L  ++TDVPI   L  LIL +   
Sbjct: 235 QDHIDMLKLSHELATIQTDVPIEADLTSLILPNYEP 270


>gi|290998603|ref|XP_002681870.1| predicted protein [Naegleria gruberi]
 gi|284095495|gb|EFC49126.1| predicted protein [Naegleria gruberi]
          Length = 1648

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 156/760 (20%), Positives = 298/760 (39%), Gaps = 85/760 (11%)

Query: 278  ALEFTKLINRVATTYDCDAANIEPVVL--DINTTENKGIAI-----ETEIDRDTTIKTSQ 330
             L F+  +  +A   D    +IE +++    NTTE++  A         I  +  +    
Sbjct: 870  RLLFSAGLRTIAQVADETPESIENILVKGSQNTTESRTKANLIVEGAKAIVEEKLLPLEW 929

Query: 331  FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK-------IVNTKDIQQWVQK 383
                 D+ + +    +P+K   +R          +    +       + + +   +++++
Sbjct: 930  IFGPQDEDTFLFQNSSPKKRGKKRCNAFDDNQAEHKKKKEDSVIELKLGDNQLFDEFLER 989

Query: 384  LETIGSASFKII----------TD---TMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
                   SF             T      D +  K   ++I   +  +D     +     
Sbjct: 990  WNNSKVFSFCFEFGIKKKQDNPTTFIKNRDVYTVK--GLSICFNEVFEDYLTFEKRCETK 1047

Query: 431  LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL-VLHRYGISMR-GFED 488
            +             L       +K+  +++   K+    K  +  +L  + + ++    D
Sbjct: 1048 I-DPNIPCKCYFIHLDDYRSKIVKRMLQDKRKPKLTFGFKKQQTRLLQAWDLIVKDPVLD 1106

Query: 489  IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             M+  +V     S ++  ++ + +L Y   +       S      +D  V          
Sbjct: 1107 PMIGDWVQHPDDSDNE-KTLEEIYLKYFPSD-------SFLFTPKNDKFVIVKTASQCWP 1158

Query: 549  ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
            I+   ++    L + ++       +     V+S ME  GI+ +   +K  +  I   L  
Sbjct: 1159 IMTAVMVSIINLELRQM----FEFEMSFSKVLSTMEHNGIRFNYHWIKHNTKLIDAKLDE 1214

Query: 609  LEENI---YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
            +  ++     L G+K ++S+   +               T+    K   + L+++    +
Sbjct: 1215 ITRDLNSLQILDGKKIDVSNNDHVAL---LLFDKLKLKGTERKTNKEILEKLKKLYPDKS 1271

Query: 666  PIIKNILEWRQLSKIKSTYADSLPNHI----NKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             I+K I E+R L  IK+ +  ++PN I    + +  R+       ++ TGRL+   PNLQ
Sbjct: 1272 YIMKQISEYRYLLNIKTHHIQNMPNDIKYCPDTQEYRIFASQMQTTSATGRLSVKNPNLQ 1331

Query: 722  NIPIKTDLGQK----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
            NIP   D+             IR AFI      ++S DY  IELRILAH+++   L  + 
Sbjct: 1332 NIPNDIDIKDPFSQKSIITLSIRSAFIPRNGYVMVSIDYKNIELRILAHLSQDRTLSDIL 1391

Query: 772  ENS-LDIHRMVAAEIFGVNIEKVSPQMRR-HAKTINFSIIYGISPFRLATQLRIPR---- 825
             N+  DI   +A   +    E+  P   R   K I + I Y +    L+ ++        
Sbjct: 1392 SNTERDIFEEIARNFWNFRPEEPVPLSHRSLVKQIIYGISYCMGSETLSGKMFNSENEDF 1451

Query: 826  ---------SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
                       A  Y + +F ++ G+ +Y +  +N + +  YVET + R+    +I S  
Sbjct: 1452 MLRPGEDRIEAAERYKQNFFEKYQGLKQYKDFVENHLVEKHYVETSYSRKRFIHDICSDD 1511

Query: 877  SSIRNINERAAINAPIQGSAADITRRAMISVH---KSLEDHKLATKMLLQIHDELVFEVP 933
            SS R    RAA+N   QGSA+DI +  M+ ++   +     +    MLLQIHDEL+FEV 
Sbjct: 1512 SSKRAAARRAALNTVSQGSASDIMKIVMLGIYSFMRHFNKKEERAYMLLQIHDELLFEVR 1571

Query: 934  EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            E+ ++T      + M+        L VPL V +++ ++W 
Sbjct: 1572 EDSLSTFIYCTKNIMQN---TDKKLLVPLPVKVQIGDSWG 1608


>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/333 (32%), Positives = 160/333 (48%), Gaps = 28/333 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   +  + S +   L    ++    R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 818  IAALCEMCSIGSLISNFILPLQGQDVSGENGRIHCSLNI-NTETGRLSARRPNLQNQPAL 876

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++     LI ADY Q+ELRILAH+A    +   F+   D H   A  ++
Sbjct: 877  EKDRYKIRQAFVAAQGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMY 936

Query: 787  GVNIEKVS--------------------------PQMRRHAKTINFSIIYGISPFRLATQ 820
                E V                              RR AK +NFSI YG +   LA  
Sbjct: 937  THIREAVENGRVLLEWHPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARD 996

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA + + R++     + ++ E+ K   R+   V T+ GR   +  + +   S++
Sbjct: 997  WKVSVKEAKETVDRWYRDRKEVSDWQEQRKFEAREFRRVHTLLGRARWFPSVKNATGSVK 1056

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               ERAAIN P+QGSAAD+   AM+ + K+    +L  K+LLQ+HDE++ E PEE    A
Sbjct: 1057 GHIERAAINTPVQGSAADVAMCAMLEISKNARLEELGWKLLLQVHDEVILEGPEESENEA 1116

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K    K  LRV L V+ K + NW 
Sbjct: 1117 MAIVVDCMSKPFGGKNILRVDLSVDSKCAKNWY 1149



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 97/290 (33%), Gaps = 66/290 (22%)

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
           H + I  +I +  + D    K       L      D  GKN L +        FF++   
Sbjct: 406 HGEIICFSIYSGPEADFGDGKSCIWVDVL------DGDGKNLLVE-----FAPFFQDPSI 454

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASI---------- 508
            K+ HN  +D  V+  YG  + GF  D M M+ + DS R     + + ++          
Sbjct: 455 RKVWHNYSFDNHVIENYGFKVSGFHADTMHMARLWDSSRRTSGGYSLEALTGDSTVMRDA 514

Query: 509 ----AQKWLS-------YTRKEILKSRKSSIP--------------IDKISDSQVQEHAI 543
               A++           + K I   +K                  + K        ++ 
Sbjct: 515 RPVHAERLFHGEGLFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEELQKTERELWICYSA 574

Query: 544 ENSNVILQLWLLLRPKLIVE----------KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            +S   L L+  L+ KL              +   YE+  +P  +++ QME  G+ +D+ 
Sbjct: 575 LDSISTLMLYESLKNKLAKRIWTFDGVRKGSMYEFYEKYWRPFGELLVQMETEGVLVDRA 634

Query: 594 LLKQVSAEISKNLLSLEENIYDLS------GEKFNLSSPKQLGDILFTKL 637
            L ++                + +       +  N+ S  QL  + F  +
Sbjct: 635 YLAEIEKVAKAEQQVAANRFRNWAAKYCHDAKYMNVGSDTQLRQLFFGGI 684


>gi|260889281|ref|ZP_05900544.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860692|gb|EEX75192.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 346

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 136/288 (47%), Gaps = 15/288 (5%)

Query: 16  IYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75
           +YR+ +A  +  R  +G+   A  GF N L  +++  R + + +   V  D        E
Sbjct: 1   MYRSHFAL-MGMRNSNGMSTGATFGFINTLESVIREFRPDYLVACLDVKRDELERAGELE 59

Query: 76  IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA---EKEG 132
               YKA+R  +PE L+ Q+  +      + IP  +  G EADD+IAT+       E E 
Sbjct: 60  T---YKAHRESMPEELVMQIDTIMKVLDGYRIPKYKKAGQEADDVIATFATKFSNDEDEQ 116

Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWGIPPEKMVCLQAL 185
             V +I+ DKDL QLV     +    K +K          E V++  G+ P+K+  L  L
Sbjct: 117 IEVFVITGDKDLAQLVDGKINIALLGKGDKNSAFKHIKTDEDVVEYLGVTPDKIPDLFGL 176

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD  D IPG+ GIG K    L+  YGNLE I  N   IK  K++E +L   E A +SR+
Sbjct: 177 MGDKSDGIPGVAGIGPKNGVKLITTYGNLEGIYENIDEIKG-KQKEKLLTDKENAFISRE 235

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           L  ++ ++ I    + L  E+ +   L+   + L+F +    V    +
Sbjct: 236 LATVKRELDIEYDKKKLKFEEKDFDSLLELYEELDFKRFSKAVEEEKE 283


>gi|156552095|ref|XP_001605062.1| PREDICTED: similar to Mus308 [Nasonia vitripennis]
          Length = 2242

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 115/501 (22%), Positives = 214/501 (42%), Gaps = 42/501 (8%)

Query: 405  KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
            K   I IS   +           ++   +     +T      KE +S+L+    +     
Sbjct: 1749 KLCGIVISWGTKA--------VYYMPFGI-----TTETKITIKERMSFLRDILSDASVTL 1795

Query: 465  IGHNIKYDKLVLH-RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
               N K    + +    +     F D     +++++   +     +A ++          
Sbjct: 1796 RCFNAKDVYKMFYICCEVEPNCSFLDPKAGDWLMNAETCNKGYTELAAQYFPRGIDIANA 1855

Query: 523  SRKSSIPIDKISDSQVQEHAI---ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
               +        D++    A+     +N +++      P       L  Y+ ++ P I +
Sbjct: 1856 CENNYGTYVLTRDARAGAKALLAWYVANAVVEAVKEFSPI-----SLSAYKDIEMPTILI 1910

Query: 580  VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
            ++ ME+ G  I+ + L++++  I  +L  +EE  +  +G KFN  S K++  +L      
Sbjct: 1911 LANMELRGFGINVESLQELATVIKNDLGRIEEEAFRAAGRKFNFYSSKEVSQVL----GL 1966

Query: 640  PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
                +  T +          +   +NPI   +  WR+L+ +++     L   + ++  R+
Sbjct: 1967 NKRGRACTNKNA--------LKSCENPISNLVTLWRKLTTVQTKIVFPLL-QLERKNNRI 2017

Query: 700  HTFYSLASTMTGRLASLEPNLQNIPIKTD-----LGQKIRRAFISPPTKKLISADYSQIE 754
            H       T+TGR++  EPNLQ IP             +R AF+      ++SAD+ Q+E
Sbjct: 2018 HGNCITY-TVTGRVSMHEPNLQTIPRDFKSDISGCILSVRMAFVPASGNIMLSADFCQLE 2076

Query: 755  LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            LRILAH ++   L ++     DI + +AA +     E+V   MR+ AK + +++IYG+  
Sbjct: 2077 LRILAHFSQDPVLCKLLHGKGDIFKSIAARLNKTTEEQVDDDMRQRAKQLCYAMIYGMGA 2136

Query: 815  FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
              LA  L    SEA DY++ +   + GI  ++       R  G+V TI  RR     INS
Sbjct: 2137 KSLAETLSATESEAKDYLEAFMGTYKGIRVWLTGVCEQARVEGFVSTIANRRRILPGINS 2196

Query: 875  PKSSIRNINERAAINAPIQGS 895
              S++++  ER A+N  +QGS
Sbjct: 2197 KISAVKSQAERQAVNTKVQGS 2217


>gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1088

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 110/332 (33%), Positives = 163/332 (49%), Gaps = 30/332 (9%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I  + E   +  + S +   L  ++++ +  RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 667 IAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPAL 725

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR+AFI+ P   LI ADY Q+ELRILAH+A    + + F    D H   A  ++
Sbjct: 726 EKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMY 785

Query: 787 GVNIEKVS--------------------------PQMRRHAKTINFSIIYGISPFRLATQ 820
               E V                              RR AK +NFSI YG +   L+  
Sbjct: 786 PHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRD 845

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            ++ R EA D +  +++    + ++ E  K    Q GYV T+ GR   + E  S   + +
Sbjct: 846 WKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTLLGRARKFPEYRSR--AQK 903

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           N  ERAAIN P+QGSAAD+   AM+ +  +    +L  K+LLQ+HDE++ E P E    A
Sbjct: 904 NHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENA 963

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
             I+V+ M +    K  L V L V+ K + NW
Sbjct: 964 KDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 995



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 108/300 (36%), Gaps = 64/300 (21%)

Query: 393 KIITDTMDAFHSKPI----AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
                 +D     P+     I  S     +         F D       D  G+N   ++
Sbjct: 237 DTEVSRIDVKTETPVDHGEMICFSIYCGSE-------ADFGDGKSCIWVDVLGENG--RD 287

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHD 504
           IL+  K FFE+    K+ HN  +D  ++  YGI + GF  D M M+ + DS R     + 
Sbjct: 288 ILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYS 347

Query: 505 IASI---------------AQKWLSYTRKEILKSRKSSI-----------PIDKISDSQV 538
           + ++               A+ +   + K+I    K              P+ ++     
Sbjct: 348 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDR 407

Query: 539 QE---HAIENSNVILQLWLLLRPKLIVEK------------LLHVYERLDKPMIDVVSQM 583
           +    ++  +S   L+L+  ++ +L  +K            +   Y+   +P  +++++M
Sbjct: 408 EAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAKM 467

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS------GEKFNLSSPKQLGDILFTKL 637
           E  G+ +D+D L Q+                + +       +  N+ S  QL  + F  +
Sbjct: 468 ESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFGGI 527


>gi|303289002|ref|XP_003063789.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454857|gb|EEH52162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 942

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 128/636 (20%), Positives = 239/636 (37%), Gaps = 92/636 (14%)

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST----------GKNTLTKEILSY 452
            ++ +   +  L +  D S              + D+           GK T+     + 
Sbjct: 319 RAEAVGFGVVLLGRGADDSLWFFPAG-PGGADGADDALLSALIRALCCGKQTVALHAQAV 377

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDS-GRSSHDIASIAQK 511
           ++ +       ++  +             S+    D  +M+++          I ++ ++
Sbjct: 378 VR-WLSLTRDSEVAFDA------------SVACVLDPRIMAWLASPEDAHDGGIDALTRE 424

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +          +  ++   D+    +++   +  + +       L+    V  L  V   
Sbjct: 425 FGGGDDGGGGGAAATATATDR-PLERLRLDLLAAARLT----QRLKAHERVRGLARVVA- 478

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS---GEKFNLSSPKQ 628
           L+  +   +  +E  G+  D  +++  +  + + L S+E          G+  NLSSP+Q
Sbjct: 479 LEGAIAAGLGTLESIGLPFDASVVEAAAVGLRRELSSIEAEASRSLPGRGQPLNLSSPQQ 538

Query: 629 LGDILFTKLKFPSG-------AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           + D+L+  L FP         AKT     K             +P+   +L +R +++  
Sbjct: 539 VADVLYGFLGFPPPSSNAMQGAKTAQLTTKDDVLRDFASRPNAHPLPGMVLRYRAVTRAV 598

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG----------Q 731
           +    +    +     R+   ++   T TGRL+S  PNLQ +  + +             
Sbjct: 599 AM--CNAYASLTDADGRLRCEWNNTRTATGRLSSSNPNLQAVG-RAEHSAGAGEEELATF 655

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE---NSLDIHRMVAAEIFGV 788
            +R AF++PP K L++ DYSQIELR LAH+ +   L  V     +  D+ +M+       
Sbjct: 656 NLRAAFVAPPGKVLLAVDYSQIELRTLAHLTRDEKLCGVLRVAGDGGDVFKMIWNLSRDA 715

Query: 789 NIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
             +  VS + R  AK   + ++YG     LA +L      A   I   F  FPG+  ++ 
Sbjct: 716 PRDAPVSAEDRDKAKRTVYGVLYGQGVAGLAEKLACSTDAAKGLIDALFRTFPGLKRFVV 775

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
            TK   R     E   GR      I++  +S R   ER A+N  +QG+AAD+ + AM   
Sbjct: 776 ATKERARATKSAELPSGRHRPLPGIDAAAASARAEAERKAMNTLVQGTAADMMKTAMARW 835

Query: 908 ----------------------------HKSLEDHKLATKMLLQIHDELVFEVPE--EEI 937
                                           +      +++ QIHDEL+FE  +  E +
Sbjct: 836 FAAISPAPAASASASAISPGGAEGDAHADVRGKADPTRARLIAQIHDELLFECDDARECV 895

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              + +    ME+A      + VP  V + V  +W 
Sbjct: 896 NRVAALAKVCMERAA----KVSVPTPVKVSVGRDWA 927


>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/333 (32%), Positives = 160/333 (48%), Gaps = 28/333 (8%)

Query: 668  IKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   +  + S +   L    ++    R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 818  IAALCEMCSIDSLISNFILPLQGQDVSGENGRIHCSLNI-NTETGRLSARRPNLQNQPAL 876

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++     LI ADY Q+ELRILAH+A    +   F+   D H   A  ++
Sbjct: 877  EKDRYKIRQAFVAAQGNSLIVADYGQLELRILAHLANRKSMLDAFKAGGDFHSRTAMNMY 936

Query: 787  GVNIEKVS--------------------------PQMRRHAKTINFSIIYGISPFRLATQ 820
                E V                              RR AK +NFSI YG +   LA  
Sbjct: 937  THIREAVENGEVLLEWHPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARD 996

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA + + R++     + ++ E+ K   R+   V T+ GR   +  + +   S++
Sbjct: 997  WKVSVKEAKETVDRWYSDRKEVSDWQEQRKFEAREFRRVHTLLGRARWFPSVKNATGSVK 1056

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               ERAAIN P+QGSAAD+   AM+ + K+    +L  K+LLQ+HDE++ E PEE    A
Sbjct: 1057 GHIERAAINTPVQGSAADVAMCAMLEISKNARLEELGWKLLLQVHDEVILEGPEESENEA 1116

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V  M K    K  LRV L V+ K + NW 
Sbjct: 1117 MAIVVDCMSKPFGGKNILRVDLSVDSKCAKNWY 1149



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 100/305 (32%), Gaps = 70/305 (22%)

Query: 393 KIITDTMDAFHSKPIA----IAISTLDQKDDTSFKVE-TIFIDLSVHTSQDSTGKNTLTK 447
                 +D     P+     I  S     +      +  I++D+      D  GKN L +
Sbjct: 390 DTEVAKIDVKQQTPVDHGDIICFSIYSGPEADFGDGKSCIWVDV-----LDGGGKNLLVE 444

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SH 503
                   FF++    K+ HN  +D  V+  YG  + GF  D M M+ + DS R     +
Sbjct: 445 -----FAPFFQDPSIRKVWHNYSFDNHVIENYGFKVSGFHADTMHMARLWDSSRRTSGGY 499

Query: 504 DIASI--------------AQKWLS-------YTRKEILKSRKSSIP------------- 529
            + ++              A++           + K I   +K                 
Sbjct: 500 SLEALTGDSTVMRDARPVHAERLFHGEGLFGKISMKTIFGRKKLKKDGTEGKVTVIPSVE 559

Query: 530 -IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----------KLLHVYERLDKPMID 578
            + K        ++  +S   L L+  L+ KL              +   YER  +P  +
Sbjct: 560 ELQKTERELWICYSALDSISTLMLYESLKNKLSKRIWTFDGVRKGSMYEFYERYWRPFGE 619

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS------GEKFNLSSPKQLGDI 632
           ++ QME  G+ +D+  L ++                + +       +  N+ S  QL  +
Sbjct: 620 LLVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAKYCPDAKYMNVGSDTQLRQL 679

Query: 633 LFTKL 637
            F  +
Sbjct: 680 FFGGI 684


>gi|225550719|ref|ZP_03771668.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
 gi|225379873|gb|EEH02235.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
          Length = 289

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/294 (32%), Positives = 155/294 (52%), Gaps = 16/294 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K     ++DG+S IYRAF+AT      + ++  +P NAI    +M++K+L   +    
Sbjct: 1   MKKA---IVIDGNSLIYRAFHATYKQAEWAVENQLMPTNAIKLVASMIFKILNEDQ---- 53

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            S+  +  D    TFR + Y  YKA R  + E L+ QLP ++    A G   I   G EA
Sbjct: 54  FSYALIALDASKKTFRAQEYAAYKATRKPMDEKLVVQLPYIKKLFTAMGFHIISQPGIEA 113

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW----- 172
           DD + +++ +  K      I STD+D++QL++P T L        I  E  +  +     
Sbjct: 114 DDFVGSFSNLMSKSNIDTIIYSTDRDMLQLINPNTKLKLLKTGTSIVQEINLANFALLNN 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++  + L GDS DN+ G+ GIG KTA  L+ +Y NLENI  N   I     +  
Sbjct: 174 GLLPKQIIDYKGLVGDSSDNLVGVKGIGPKTAINLILKYTNLENIYANLEEITPS-VKNK 232

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           ++E+ + A LS+KL  ++TD+ +   LE+ IL+  N   L +  ++L+   + N
Sbjct: 233 LIEHEKMAFLSKKLATIQTDLLLDETLENFILKPYNIQELDTLFESLKINNMHN 286


>gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
 gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1044

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 111/333 (33%), Positives = 163/333 (48%), Gaps = 30/333 (9%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I  + E   +  + S +   L  ++++ +  RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 712  IAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPAL 770

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AFI+ P   LI ADY Q+ELRILAH+A    + + F    D H   A  ++
Sbjct: 771  EKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLASCKSMKEAFIAGGDFHSRTAMNMY 830

Query: 787  GVNIEKVS--------------------------PQMRRHAKTINFSIIYGISPFRLATQ 820
                E V                              RR AK +NFSI YG +   L+  
Sbjct: 831  PHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRD 890

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA D +  +++    + ++ E  K    QNGYV T+ GR   +    S   + +
Sbjct: 891  WKVSIEEAQDTVNLWYNDRQEVRKWQELRKKEAIQNGYVLTLLGRARKFPVYRSR--AQK 948

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
            N  ERAAIN P+QGSAAD+   AM+ + K+    +L  K+LLQIHDE++ E P E    A
Sbjct: 949  NHIERAAINTPVQGSAADVAMCAMLEISKNQRLKELGWKLLLQIHDEVILEGPSESAENA 1008

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              I+V+ M +    K  L V L V+ K + NW 
Sbjct: 1009 KDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWY 1041



 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 64/300 (21%)

Query: 393 KIITDTMDAFHSKPI----AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
                 +D     P+     I  S     +         F D       D  G+N   ++
Sbjct: 282 DTEVSRIDVKTETPVDHGEMICFSIYCGSE-------ADFGDGKSCIWVDVLGENG--RD 332

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHD 504
           IL+  K FFE+    K+ HN  +D  ++  YGI + GF  D M M+ + DS R     + 
Sbjct: 333 ILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLWDSSRRISGGYS 392

Query: 505 IASI---------------AQKWLSYTRKEILKSRKSSI-----------PIDKISDSQV 538
           + ++               A+ +   + K+I    K              P+ ++     
Sbjct: 393 LEALTSDPRVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQMEDR 452

Query: 539 QE---HAIENSNVILQLWLLLRPKLIV------------EKLLHVYERLDKPMIDVVSQM 583
           +    ++  +S   L+L+  ++ +L              + +   Y+   +P  +++++M
Sbjct: 453 EAWISYSALDSISTLKLYESMKKQLQAKKWFLDGNLISKQNMFDFYQEYWQPFGELLAKM 512

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS------GEKFNLSSPKQLGDILFTKL 637
           E  G+ +D+D L Q+                  +       +  N+ S  QL  + F  +
Sbjct: 513 ESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRSWASKHCPDAKHMNVGSDTQLRQLFFGGI 572


>gi|115754782|ref|XP_790049.2| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
 gi|115960873|ref|XP_001194514.1| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
          Length = 1312

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 120/561 (21%), Positives = 231/561 (41%), Gaps = 88/561 (15%)

Query: 399  MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
            + + H   +A ++    Q+     +    ++ +S   +    GK   ++   + L +  +
Sbjct: 617  LSSLHEDGVANSVLVAVQRKAAKKE----YMFVSFPLAGLHVGKENASEATRNVLLEILQ 672

Query: 459  NEHFLKIGHNIKYDKL-VLHRYGISMRG------FEDIMLMSYVLDSGRSSHDIASIAQK 511
            + +  K+  + +     ++  Y +  +         D  +  ++LD        + + + 
Sbjct: 673  S-NTRKVCFDAQELMHAIIINYRLDPQSGCNKWVIMDPKIACWLLDPDNPPVTFSGMLKT 731

Query: 512  WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +L               P + ++  ++    I +          L  KL  + L  ++  
Sbjct: 732  FL-------AGKYNDQTPNNHLAHLELLGPVIGD----------LTNKLQRKNLWELFIN 774

Query: 572  LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
            L+                                +  +E   Y  +G  F ++S  QL  
Sbjct: 775  LE------------------------------DEIKDVERQCYKKAGHPFQITSHIQLRQ 804

Query: 632  ILFTKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            +LF +LK          A+T     K+T++ +       +P+ + +L  RQ         
Sbjct: 805  VLFDELKLDELCPGQKLARTNVQNLKSTSEMVLHKLKDLHPLPELVLTHRQN-------- 856

Query: 686  DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
                 +I K+  +VH   + +      ++S  P    + ++          F S      
Sbjct: 857  ---IQNIPKQPLQVHKDANGSVVNESTVSSTAP-ATTLWMREP--------FFSHEGWSF 904

Query: 746  ISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            I+AD+  IELRILAH+++   L +VF ++   DI   +  E  G+N+E V    R   K 
Sbjct: 905  IAADFQSIELRILAHLSQDAVLLKVFNDAGSTDIFVQLTCEWLGLNLEDVKTGDRERTKR 964

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            I +S+IYG+   RLA  L   +  A  + K +  +F G++ + ++  +  +++G+V+TIF
Sbjct: 965  IVYSVIYGVGAERLAETLNDTKENAKAFTKSFLVKFKGVNTFAQRCISECQRHGHVKTIF 1024

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLL 922
             R      I+S    +R+  ER A+N  IQGSAADI + AMI +   L +   +  ++L+
Sbjct: 1025 HRHRLISNISSQNFHVRSHAERQAVNFVIQGSAADICKLAMIHIMTVLSERNTVRARLLV 1084

Query: 923  QIHDELVFEVPEEEITTASQI 943
            QIHDEL+FEV +E+I      
Sbjct: 1085 QIHDELLFEVHDEDINEVKAK 1105


>gi|34763058|ref|ZP_00144032.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887284|gb|EAA24381.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 286

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 134/280 (47%), Gaps = 20/280 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
               L+D S+ +YRA++A      K++  P  A+ GF N L  ++   + +    + A  
Sbjct: 2   KRAVLLDVSAIMYRAYFANINFRTKNE--PTGAVYGFINTLLSIINEFKPD----YMAAA 55

Query: 65  FDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD    +  R EIY DYK+NR   PE L+ Q+P +     AF I   +I G+EADD++ +
Sbjct: 56  FDVKRSSLKRTEIYGDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIDGYEADDVLGS 115

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---YDTVKEEKIDI----EHVIKKWGIPP 176
                 K+   V II+ DKDL QLV     +       + EK  I    + V+   G+ P
Sbjct: 116 LAKKIAKQDIEVIIITGDKDLSQLVERNISVALLGKGTEGEKFGILKNSDDVVNYLGVVP 175

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRE 231
           EK+  L  L GD  D IPG+  IG K A  +  +Y +LE I  N   +K          +
Sbjct: 176 EKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYENIDNLKNIDGIGPSLIK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           N++   + A +SR+L  + TD+ IT+    L     +  +
Sbjct: 236 NLVNEKDIAFMSRELAKIFTDLDITVEDSGLXY-GMDREK 274


>gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5]
 gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase
 gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5]
          Length = 595

 Score =  249 bits (635), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 125/633 (19%), Positives = 247/633 (39%), Gaps = 92/633 (14%)

Query: 371 IVNTKDIQQWVQKLETI-GSASFKIITDTMD----AFHSKPIAIAISTLDQKDDTSFKVE 425
           +   +D++ +   +       +    T  +D     F  + +           D ++ V 
Sbjct: 18  VETPEDLEGFRNFIRAHLNCLAVDTETTGLDIYSDTFECRLVQF------GTQDEAWVVP 71

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMR 484
               D+ +   + + G           LK+         +  N  +D  VL   +GI M 
Sbjct: 72  VELGDVFIEDVRIAIG----------ALKRM--------VLQNASFDLQVLDQCFGIEME 113

Query: 485 G----FEDIMLMSYVLDS-----GRSSHDIASIAQKWLSYTRKEILKSRKSSIPID---- 531
           G      D  +++ ++D      G   H +  +  K++S  + E +K   + +  +    
Sbjct: 114 GLWPRVLDTQILAKLVDPRPFEAGGFGHSLEELIAKFISEDQAENVKKLMAKLAAEHKTT 173

Query: 532 --------KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
                    +   +   +A  ++    ++   L P  +V  +       +  + ++ S +
Sbjct: 174 KAKIWSTIDLFHPEYLLYAGMDTIFTARVCKSLTP--LVPDVSRSLVPYEHKISEICSYI 231

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
           +  G  +D +  + ++ +   +    E   +   G +  ++S + L + L  ++      
Sbjct: 232 DRQGFLLDVEYSRSLAEKWLADQEVWEAIAFTEYGVE-KVNSTEDLAEGL-EEMGVKITG 289

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT--QRVHT 701
           +T+TG+ +  A  L+++    N +     E ++L K + T+       I+ R    R HT
Sbjct: 290 RTETGKRQVNAALLDKLVEDGNELAAIAQEAKKLGKWRKTWV---QKFIDTRDSEDRCHT 346

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
           F +     T R++      Q +P        +RR FI+ P   + S DY   ELR+LA +
Sbjct: 347 FINPLQARTSRMSITGIPAQTLPSSD---WIVRRCFIAEPGDVMASVDYQAQELRVLAAL 403

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    + + FEN  D+H+M A           +   R+  KT NF  +YG     LA  +
Sbjct: 404 SGDRNMIEAFENGADLHQMTA---------DAAQVPRKVGKTANFQKVYGGGAKALAEAV 454

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
            I    A    + +   +PG+    +K      +NGY+    GRR+  D          +
Sbjct: 455 GISIPVAKRVHEAFSATYPGVERLSKKLAMEAGRNGYIVNAMGRRLPVD----------S 504

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
               +A+N  IQ S+ D+T RA+I +H    +      + L IHDE+V  +P  E   A+
Sbjct: 505 SRTYSALNYMIQSSSRDVTCRALIRLH----EAGYTPYLRLPIHDEIVASLPASEAERAA 560

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSN-NWQ 973
             I H M++   P +     +  + +V   +W 
Sbjct: 561 AHIGHLMQEQMGPVL-----VGTDPEVGKRSWG 588


>gi|148377432|ref|YP_001256308.1| DNA polymerase I [Mycoplasma agalactiae PG2]
 gi|148291478|emb|CAL58863.1| DNA polymerase I: 5' 3' exonuclease domain [Mycoplasma agalactiae
           PG2]
          Length = 305

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 143/300 (47%), Gaps = 22/300 (7%)

Query: 1   MQKENHL-FLVDGSSFIYRAFYATPLLSR------KHDGLPVNAIAGFCNMLWKLLQNSR 53
           M  EN L  LVDG+  I+++FYA+             DG   N +  F   L+KL+    
Sbjct: 1   MNSENKLMLLVDGNFLIFQSFYASYNKYNPNSVLVAKDGTTTNGVHVFFQTLFKLI---- 56

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           K    +H  + FD    T R+E Y DYKA R K PE++  Q  L +    A  I   E  
Sbjct: 57  KFYNPTHLFIAFDAKGKTKRHEEYDDYKAGREKAPEIIFEQFDLAKKILSAMNIKWFEKV 116

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-------EKIDIE 166
           G+EADD+IAT      +  F   I S DKDL+QLV+    +   VK+       +   + 
Sbjct: 117 GYEADDLIATIAKHNSQ--FNNYIYSKDKDLLQLVNQNNSIIKVVKKVGNFTEYKLETVN 174

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
                +GI P ++   + L GDS D + G+ GIG K A  LL E+G LE I  N ++I  
Sbjct: 175 EFADIYGINPNQIPDYKGLAGDSSDKLKGVAGIGPKKAISLLNEFGTLEAIYENINKITG 234

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           K  +E +    E+A   ++L +L + V +   +E   +   N  + IS LK   F  +++
Sbjct: 235 KT-KEYLENDCESAHFCKRLAILNSYVEMDTNIEDYKIM-LNQDKAISILKEFGFDSILD 292


>gi|302518090|ref|ZP_07270432.1| 5'-3' exonuclease [Streptomyces sp. SPB78]
 gi|302426985|gb|EFK98800.1| 5'-3' exonuclease [Streptomyces sp. SPB78]
          Length = 312

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 27/312 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R +++ +  
Sbjct: 5   TQTPRLMLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDALVACM 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAI 110
              +      +R  + P YKA+R            ++P+ L PQ+P++     A GI  +
Sbjct: 65  DADW---RPEWRVSLIPSYKAHRVAEETETGPDEEEVPDSLSPQVPVIEAVLDALGIARL 121

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKID 164
            + G+EADD+I T    A      V I++ D+DL QLV       +   +K     +  D
Sbjct: 122 GVPGYEADDVIGTLATRA---HGPVDIVTGDRDLFQLVDDARGVRVLYPLKGVGSLQVTD 178

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
              + +K+G+       L  L GD  D +PG+PGIG KTAA LL  YG+L+ I   A+  
Sbjct: 179 EALLREKYGVDGPGYADLATLRGDPSDGLPGVPGIGEKTAAKLLAAYGDLDGIRAAAADP 238

Query: 225 KQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALE 280
             K    +R  ++E A    ++  +V +  D+P+   L+  L  E  +G  L +  +   
Sbjct: 239 ASKITPAQRRRLVESAPYLDVAPAVVRVARDIPVPEDLDERLPDEPRDGEVLTALGERWG 298

Query: 281 FTKLINRVATTY 292
               ++RV  T 
Sbjct: 299 LGGSLDRVLHTL 310


>gi|307177771|gb|EFN66768.1| ATP-dependent DNA helicase HEL308 [Camponotus floridanus]
          Length = 1821

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 101/334 (30%), Positives = 171/334 (51%), Gaps = 36/334 (10%)

Query: 671  ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-----I 725
            +    ++ + +S     L      +T       S+  T+TGR++  EPNLQN+P      
Sbjct: 1488 LASKTKIIETQSNLIQPLLKL--AQTDSRVRGNSITCTVTGRVSMHEPNLQNVPKDFSFA 1545

Query: 726  KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
              +    +R AF+      ++SADY Q+ELR+L H ++ + L ++     DI + +AA+ 
Sbjct: 1546 DNNFVLSVRMAFVPALGNIMLSADYCQLELRLLTHFSQDSILCEIMRQPGDIFKSIAAKW 1605

Query: 786  FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              V+ E+V+ +MR+  K + + +IYG+    LA  L I  SEA ++++ +   +PGI+++
Sbjct: 1606 NNVSEEEVTIEMRQRTKQLCYGMIYGMGVKSLAENLCISESEAQEFLESFMSTYPGIYKW 1665

Query: 846  IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
            +        ++ Y+ T+ GRR  + ++ S KSS R   ER A+N  +QGSAADI ++AMI
Sbjct: 1666 LNNVLEEAHRDVYITTLLGRRRQFPDLKSTKSSTRAQAERQAVNTKVQGSAADIVKKAMI 1725

Query: 906  SVHKSLE---------------DHKLAT----------KMLLQIHDELVFEVPEEEITTA 940
            S+ + +                  KL +           ++LQ+HDEL++EV   ++   
Sbjct: 1726 SIEERIRCNFPDSAIIFPEMNNTRKLRSNSRDMQQRGGYLVLQLHDELLYEVNLADLKEV 1785

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            + II  SME  C     L VPL V I+V   W +
Sbjct: 1786 AAIIRESMENVC----QLTVPLPVKIRVGPAWGD 1815


>gi|291320097|ref|YP_003515355.1| DNA polymerase I: 5' 3' exonuclease domain [Mycoplasma agalactiae]
 gi|290752426|emb|CBH40397.1| DNA polymerase I: 5' 3' exonuclease domain [Mycoplasma agalactiae]
          Length = 305

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 94/300 (31%), Positives = 143/300 (47%), Gaps = 22/300 (7%)

Query: 1   MQKENHL-FLVDGSSFIYRAFYATPLLSR------KHDGLPVNAIAGFCNMLWKLLQNSR 53
           M  EN L  LVDG+  I+++FYA+             DG   N +  F   L+KL++  +
Sbjct: 1   MNSENKLMLLVDGNFLIFQSFYASYNKYNPNSVLVAKDGTTTNGVHVFFQTLFKLIKFYK 60

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                +H  + FD    T R+E Y +YKA R K PE++  Q  L +    A  I   E  
Sbjct: 61  ----PTHMFIAFDAKGKTKRHEEYDNYKAGREKAPEIIFEQFDLAKKILSAMNIKWFEKV 116

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-------EKIDIE 166
           G+EADD+IAT         F   I S DKDL+QLV+    +   +K+       +   I 
Sbjct: 117 GYEADDLIATIAK--HNSHFNNYIYSKDKDLLQLVNENNSIIKVIKKVGNFTEYKLETIN 174

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
             +  +GI P ++   + L GDS D + G+ GIG K A  LL E+G LE I  N  +I  
Sbjct: 175 EFVDIYGINPNQIPDYKGLAGDSSDKLKGVAGIGPKKAISLLNEFGTLEAIYENIYKISG 234

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           K  +E +    E+A   ++L +L +DV +   +E   +   N    I+ L+   F  +++
Sbjct: 235 KT-KEYLENDCESAHFCKRLAILNSDVEMDTNIEDYKII-LNQDEAIAILREFGFDGVLD 292


>gi|169826127|ref|YP_001696285.1| 5'-3' exonuclease [Lysinibacillus sphaericus C3-41]
 gi|168990615|gb|ACA38155.1| Probable 5'-3' exonuclease [Lysinibacillus sphaericus C3-41]
          Length = 296

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 145/287 (50%), Gaps = 17/287 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M     L +VDG + ++R+F+A        R  DG P N   GF   +      ++    
Sbjct: 2   MTTVPKLLIVDGMALLFRSFFASAAMGHFIRLADGTPTNGAQGFVRHVL----TAQSLMK 57

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV +D  A TFRNE++  YKANRP  PE +LPQ  + +  +   G     ++G EA
Sbjct: 58  PTHMAVCWDMGAHTFRNELFDGYKANRPAPPEEMLPQFDMAKNLSLQMGWQNFGVKGMEA 117

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I +      ++   +T+IS DKDL+QL+ P+T +    K     +        +++ 
Sbjct: 118 DDLIGSMIAKW-QDDADITVISGDKDLLQLLRPSTEIAFMKKGYTEYDIYTHGRFKEEYS 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +   ++A  GD+ D  PG+ GIG K A  L+Q YG+++++L +   +K   +R  I
Sbjct: 177 IEPAQFAQVKAFMGDTSDGYPGVKGIGPKQALTLIQTYGSIDSVLASLGELKPG-QRTKI 235

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
            +  +  +LS +L  ++TDVPI   L  L+L +          K +E
Sbjct: 236 QDQIDMLKLSHELATIQTDVPIEADLSSLVLPNYEP----QIFKEME 278


>gi|212695717|ref|ZP_03303845.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677390|gb|EEB36997.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 210

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/208 (40%), Positives = 134/208 (64%), Gaps = 4/208 (1%)

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F + +DIH   A+E+F   I++V+   R  AK +NF IIYGIS + L+  L IPR 
Sbjct: 5   MQEAFSHDIDIHTKTASEVFDTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRK 64

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            A +YI+ Y + +P I +Y++      ++ G+V TIF RR +  EINS   ++R+  ER 
Sbjct: 65  RAKEYIENYLNTYPQIKKYMKDIVKKAKEEGFVNTIFNRRRYVPEINSKNFNVRSFGERV 124

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N PIQGSAADI + AMI+ +++L+  K+  K++LQIHDE++ E  ++++T A +I+  
Sbjct: 125 ALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIEASKKDLTKAKEILKS 184

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974
           SME+A    + L+VPL V+I   ++  E
Sbjct: 185 SMEEA----VKLKVPLLVDIDSGDSMYE 208


>gi|299536301|ref|ZP_07049614.1| 5'-3' exonuclease [Lysinibacillus fusiformis ZC1]
 gi|298728287|gb|EFI68849.1| 5'-3' exonuclease [Lysinibacillus fusiformis ZC1]
          Length = 295

 Score =  248 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 88/276 (31%), Positives = 141/276 (51%), Gaps = 13/276 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  L +VDG + ++R+F+A        R  DG P N   GF   +      ++    
Sbjct: 1   MTTKPRLLIVDGMALLFRSFFASAAMGHFIRLADGTPTNGAQGFVRHVL----TAQTIMK 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AV +D  A TFRN+++  YKANRP  PE +LPQ  + +  +Q  G     ++G EA
Sbjct: 57  PTHMAVCWDMGAHTFRNDLFDGYKANRPAPPEEMLPQFDMAKNLSQQMGWQNFGVKGMEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I +     + E   +T+IS DKDL+QL+ P+T +    K     +        +++ 
Sbjct: 117 DDLIGSMITKWQDE-ADITVISGDKDLLQLLRPSTEIAFMKKGYTEYDIYTHARFKEEYC 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P +   ++A  GDS D  PG+ GIG K A  L+Q YG+++ IL +   +K   +R  I
Sbjct: 176 IEPSQFAQVKAFMGDSSDGYPGVKGIGPKQALTLIQTYGSIDKILASLGELKPG-QRTKI 234

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
            +  +  +LS +L  ++T+VPI      L+L     
Sbjct: 235 QDNLDMLQLSHELATIQTNVPIDADFTSLVLPTYEP 270


>gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29]
 gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase
 gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29]
          Length = 607

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 122/630 (19%), Positives = 253/630 (40%), Gaps = 74/630 (11%)

Query: 371 IVNTKDIQQWVQKLETI-GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           + + +D+  +   +       +    T  +D + +           +      + E+  +
Sbjct: 18  VEHPEDLDGFRDFIRAHQNCLAVDTETTGLDIYSAD-------FRCRLVQFGTQTESWVL 70

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG--- 485
            +      +  G+     E L  L K         +  N  YD  VL R +GI M     
Sbjct: 71  PI---EDLEMLGREE-VHEALDVLNKI--------VMQNASYDLQVLDRCFGIKMESLWP 118

Query: 486 -FEDIMLMSYVLDS-----GRSSHDIASIAQKWLSYTRKEILKSRKSSIPID-------- 531
              D  +++ ++D      G   H +  +  +++S  + E +K   + +  +        
Sbjct: 119 KILDTQILAKLVDPRPFGAGGFGHSLEELIAEFISKEQAENVKGLMAKLAKEHKTTKAKI 178

Query: 532 ----KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
                +   +   +A  ++    ++   L P  +V  +       +  + ++ S ++  G
Sbjct: 179 WSTIDLYHPEYLTYAGMDTVFTARICSALAP--LVPDVSRPLVPYEHKISEICSYIDRRG 236

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D +  +Q++ +        E  + +  G +  +++ + + +  F +L     A T +
Sbjct: 237 FLLDVEYSQQLADKWLGEQQVWEAVLLNEYGIE-KVNATEDVAEA-FEELGHKFTAFTDS 294

Query: 648 GQWKTTA---QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
           G+ K       D+         + + + E ++L K ++++  +  +  +    R HTF +
Sbjct: 295 GKRKVDKGFYADMIAAGGEKAHLAEMVQEAKKLGKWRTSWVQTFLDTRDSED-RCHTFVN 353

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
                T R++      Q +P        +RR F++ P   + S DY   ELR+LA ++  
Sbjct: 354 PLQARTSRMSITGIPAQTLPASD---WTVRRCFLADPGHVMASIDYQAQELRVLAALSGD 410

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             + Q F++  D+H M A   FG +I K  P+ R++AKT+NF  +YG     +A Q  I 
Sbjct: 411 RTMIQAFKDGADLHLMTARAAFGDHITKDDPE-RKYAKTVNFGRVYGGGANTVAEQTGIS 469

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
              A   +  +   +PG+  Y  K  N  ++NGY+    GRR+  D              
Sbjct: 470 IETAKQVVDGFDKAYPGVTRYSRKLANEAKRNGYIINPMGRRLPVDR----------SRT 519

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
            +A+N  IQ ++ D+T +A+I +H    +      + L IHDE+V  +P E+    ++ I
Sbjct: 520 YSALNYQIQSTSRDVTCKALIRLH----EAGFTPYLRLPIHDEIVASLPAEKANWGAREI 575

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSN-NWQ 973
              M +   P +     +  + +V   +W 
Sbjct: 576 ARLMAEEMGPVL-----IGTDPEVGKRSWG 600


>gi|294628456|ref|ZP_06707016.1| 5'-3' exonuclease [Streptomyces sp. e14]
 gi|292831789|gb|EFF90138.1| 5'-3' exonuclease [Streptomyces sp. e14]
          Length = 306

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 26/308 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+++ R + + +     
Sbjct: 3   GRLMLLDTASLYFRAYFGVPDSVRAPDGAPVNAVRGLLDFIDRLVKDHRPDRLVACMDAD 62

Query: 65  FDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +      +R E+ P YKA+R            ++P+ L PQLP++     A GI  + + 
Sbjct: 63  W---RPHWRVELIPSYKAHRVAEEHPGGPDEEEVPDTLSPQLPVIEAVLDAIGIARVGVA 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEH 167
           G+EADD+I T+T  A      V I++ D+DL QLV       +   VK     +  D   
Sbjct: 120 GYEADDVIGTFTARA---DGPVDIVTGDRDLYQLVDDARGVRVLYPVKGVGTLQTTDEAV 176

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           + +K+G+  +    L  L GD  D +PG+PG+G KTAA LL E+G+L  IL      K K
Sbjct: 177 LREKYGVDGKGYADLALLRGDPSDGLPGVPGVGEKTAAKLLAEFGDLAGILAAVDDPKAK 236

Query: 228 ---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
               +R+ + E      ++ K+V +  DVP+      L     +   L            
Sbjct: 237 LTPAQRKRLDEARPYLAVAPKVVRVAADVPLPEVATALPRAPRDAEALRELAARWGLGGS 296

Query: 285 INRVATTY 292
           + R+ TT 
Sbjct: 297 LQRLLTTL 304


>gi|171920902|ref|ZP_02932053.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|185178956|ref|ZP_02964713.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024062|ref|ZP_02996810.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518257|ref|ZP_03003785.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|195867843|ref|ZP_03079843.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198273766|ref|ZP_03206300.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|209554047|ref|YP_002284851.1| Exo [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225551170|ref|ZP_03772116.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|171903118|gb|EDT49407.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|184209232|gb|EDU06275.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188019099|gb|EDU57139.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188998225|gb|EDU67322.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|195660540|gb|EDX53797.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198249521|gb|EDY74303.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|209541548|gb|ACI59777.1| Exo [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225378985|gb|EEH01350.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
          Length = 289

 Score =  247 bits (631), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 94/294 (31%), Positives = 155/294 (52%), Gaps = 16/294 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K     ++DG+S IYRAF+AT      + ++  +P NAI    +M++K+L   +    
Sbjct: 1   MKKA---IVIDGNSLIYRAFHATYKQAEWAVENQLMPTNAIKLVASMIFKILNEDQ---- 53

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            S+  +  D    TFR + Y  YKA R  + E L+ QLP ++    A G   I   G EA
Sbjct: 54  FSYALIALDASKKTFRAQEYAAYKATRKPMDEKLVVQLPYIKKLFTAMGFHIISQPGIEA 113

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW----- 172
           DD + +++ +  K      I STD+D++QL++P T L        I  E  +  +     
Sbjct: 114 DDFVGSFSNLMSKSNIDTIIYSTDRDMLQLINPNTKLKLLKTGTSIVQEINLANFALLNN 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++  + L GDS DN+ G+ GIG KTA  L+ +Y NLENI  N   I     +  
Sbjct: 174 GLLPKQIIDYKGLVGDSSDNLVGVKGIGPKTAINLILKYTNLENIYANLEEITPS-VKNK 232

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           ++E+ + A LS+K+  ++TD+ +   LE+ IL+  N   L +  ++L+   + N
Sbjct: 233 LIEHEKMAFLSKKIATIQTDLLLDETLENFILKPYNIQELDTLFESLKINNMHN 286


>gi|255600737|ref|XP_002537523.1| DNA polymerase I, putative [Ricinus communis]
 gi|223516044|gb|EEF24860.1| DNA polymerase I, putative [Ricinus communis]
          Length = 176

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 108/176 (61%), Positives = 136/176 (77%), Gaps = 3/176 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL ++R  S+   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLTSARDTSVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +HFAVIFDY + TFR +I+P+YKANR   PE L+PQ  L+R AT+AF +P IE  GFEA
Sbjct: 61  PTHFAVIFDYSSKTFRKDIFPEYKANRSAPPEELIPQFGLIREATRAFNLPCIETDGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           DDIIATY   AE  G  VTIIS+DKDLMQLV+P   +YD++K+++I I  VI+KWG
Sbjct: 121 DDIIATYARQAEAAGADVTIISSDKDLMQLVTPMVHMYDSMKDKQIGIPDVIEKWG 176


>gi|188524383|ref|ZP_03004410.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195659992|gb|EDX53372.1| DNA polymerase type-A family protein [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
          Length = 289

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 95/294 (32%), Positives = 155/294 (52%), Gaps = 16/294 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K     ++DG+S IYRAF+AT      + ++  +P NAI    +M++K+L   +    
Sbjct: 1   MKKA---IVIDGNSLIYRAFHATYKQAEWAVENQLMPTNAIKLVASMIFKILNEDQ---- 53

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            S+  +  D    TFR + Y  YKA R  + E L+ QLP ++    A G   I   G EA
Sbjct: 54  FSYALIALDASKKTFRAQEYAAYKATRKPMDEKLVVQLPYIKKLFTAMGFHIISQPGIEA 113

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW----- 172
           DD + +++ +  K      I STD+D++QL++P T L        I  E  +  +     
Sbjct: 114 DDFVGSFSNLMSKSNIDTIIYSTDRDMLQLINPNTKLKLLKTGTSIVQEINLANFALLNN 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P++++  + L GDS DN+ G+ GIG KTA  L+ +Y NLENI  N   I     +  
Sbjct: 174 GLLPKQIIDYKGLVGDSSDNLVGVKGIGPKTAINLILKYTNLENIYANLEEITPS-VKNK 232

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           ++E+ + A LS+K+  ++TD+ +   LE+ IL+  N   L +  ++LE   + N
Sbjct: 233 LIEHEKMAFLSKKIATIQTDLLLDETLENFILKPYNIQELDTLFESLEINNMHN 286


>gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score =  247 bits (630), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 92/231 (39%), Positives = 149/231 (64%), Gaps = 1/231 (0%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYS 751
           ++   R+HT +      TGRL+S++PNLQNIP +   G++IR AF+     + L+S+DYS
Sbjct: 11  HRSDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYS 70

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           Q+ELRI+A ++    L + F +  D H+ VA+ ++GV +++++P  R H K +++ + YG
Sbjct: 71  QVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAYG 130

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +S + L+ QL I   EA    ++YF  F  +HEY+E   +  R+ GY ETI+GRR ++  
Sbjct: 131 LSTYGLSQQLGIKPGEAESLKRQYFATFGKVHEYLESLVSSAREKGYTETIYGRRRYFPG 190

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           + SP  ++R+  ERAA+NAPIQGSAADI + AMI    +L +  LA++++ 
Sbjct: 191 LKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRADDALREAGLASRIIF 241


>gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K]
 gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K]
          Length = 1072

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 113/525 (21%), Positives = 223/525 (42%), Gaps = 81/525 (15%)

Query: 531  DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITG 587
            D      +  +A  +++V  ++   +  KL  +   K +H+ E     +   ++++E  G
Sbjct: 489  DWFPIELMHPYASGDTDVCRRIHCDVIKKLKEQDRPKSMHLLEVNYPRLTKSLARIESNG 548

Query: 588  IQIDQDLLKQVSAEISKNLL----------------SLEENIYDLSGEK----------- 620
            +  D D +K+        +                   + N+Y ++ E+           
Sbjct: 549  LYCDLDYMKENDESYESEMAKNHATMREHWAVKEFEEYQYNLYQMALEEHEKKPKDRDKD 608

Query: 621  --------------FNLSSPKQLGDILFTKLK--FPSGAKTKTGQWKTT----------- 653
                          F+ SS    G +++  L    P   +    +               
Sbjct: 609  IHQYRDKFKDGKWMFSPSSGDHKGRVIYDILGIQLPYDKEYVKEKPFNANVKEADLTWQD 668

Query: 654  ----------AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
                      A D  ++      +++ +     +   ++++   L N INK+ + +H  +
Sbjct: 669  YKTDKKAIGYALDNLELKDDVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSF 728

Query: 704  SLASTMTGRLASLEPNLQNIPIKT------DLGQKIRRAFISP-PTKKLISADYSQIELR 756
            S   T T RL+S  PNLQN+P  T      D    I+R+F+S      L+ +DYS +E+R
Sbjct: 729  SETGTETSRLSSSNPNLQNLPAHTSDVNKFDYKHPIKRSFVSRFENGVLLGSDYSALEMR 788

Query: 757  ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
            I+    K   + Q F N  DIH+  A+ ++   +E+V+ + R+  K +NF + +G SPF 
Sbjct: 789  IIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESPFS 848

Query: 817  LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
             A +  +  SEA +  ++YF   P +   I+    FV+Q GYV+T+ G R       S  
Sbjct: 849  FAGKNNMEVSEAEEIFEKYFQTKPSVKTSIDNVHEFVQQYGYVDTMHGHRRFIRSAQSTD 908

Query: 877  SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
              I+N   R + N  IQGS + +T  ++  +   ++   L +K++  +HD ++ + P EE
Sbjct: 909  KKIKNEGLRQSFNTIIQGSGSFLTNMSLTYLDDFIQSRNLKSKVIATVHDSILIDCPPEE 968

Query: 937  ITTASQIIVHSMEK-------ACLPKINLRVPLKVNIKVSNNWQE 974
                +++ +H ME        A +    ++ P++ ++++  N+ +
Sbjct: 969  AKIMAKVTIHIMENLPFDFLKAEIDGKEVQYPIEADMEIGLNYND 1013



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/396 (13%), Positives = 127/396 (32%), Gaps = 45/396 (11%)

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH------------LILEDC 267
           N       K  + +LE     +  +       D  I                  +  +D 
Sbjct: 26  NVLNTPNGKTLKKLLEKCSNLKRDK----TNRDYDIDFLYNAVPTPIRNDYGKIIKYQDV 81

Query: 268 NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI- 326
               +  + + +    + N            ++ ++      + +G+  +  I+  T+  
Sbjct: 82  KQAEVKPYYERMNNIIIDNSYDMVIPVGKLGVKYLLNVTAIGKVRGVPSKVTIENGTSSH 141

Query: 327 KTSQFSSLSDQTSKINSEQTP------QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW 380
                 + S + + +N           Q +     Q    +     SY  + N + +++ 
Sbjct: 142 DVWVLPTYSIEYTNVNKNSERHVVSDLQTVGKFVEQGEEAFKPKEVSYELVDNIERVREI 201

Query: 381 VQK------LETIGSASFKIITDTM--DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
             K       + +   ++ + T+++  D   SKP+ +++S  + +  T   +     D +
Sbjct: 202 FNKEVKNDNYDGVDITAWDLETNSLKPDKEGSKPLVLSLSWRNGQGVT---IPLYKSDFN 258

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG--ISMRGFEDIM 490
               QD         E+L  LK +  ++  +K+ HN KYD   L            +D  
Sbjct: 259 WENGQD------DIDEVLELLKNWLASKEDIKVAHNGKYDIKFLMSTENFKDFESIQDTK 312

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           +  Y+  +        S+    L+Y   ++    K          +++     +    I 
Sbjct: 313 VGWYLAVTQEVK---ESLRLSDLAYEVTDVGGYDKPLEDFKLWFVTKLLRFFSDKIKEIQ 369

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +    +  K    K     E L+  + + V +++ T
Sbjct: 370 KENKKIAKKEYDVKAPEYKEWLENKLNETVVELDDT 405


>gi|182414668|ref|YP_001819734.1| 5'-3' exonuclease [Opitutus terrae PB90-1]
 gi|177841882|gb|ACB76134.1| 5'-3' exonuclease [Opitutus terrae PB90-1]
          Length = 320

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 143/285 (50%), Gaps = 16/285 (5%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVDG +  YR FYA P L+R  DG P NA+ G+   LW L   ++ ++      V FD 
Sbjct: 5   LLVDGFNLAYRCFYAIPELTRA-DGFPTNALHGWLKSLWMLADQTKPDAC----VVFFDL 59

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                R  ++ DYKA R ++PE L  QLP V+  T+A G   +E +G E+DD++A+    
Sbjct: 60  GGAQDRLALHADYKAQREEMPESLARQLPYVKSLTRAMGCVGVEQEGVESDDLLASQAVA 119

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT-------VKEEKIDIEHVIKKWGIPPEKMV 180
             + G  V I+S+DKD  Q+V     +          +    +D   V  K+G+PP  + 
Sbjct: 120 LSRAGHEVLIVSSDKDFAQIVDERVKIMLPPPTANPKLGWRLMDAAGVQAKFGVPPRMIA 179

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD+ DNIPG+ G+G KTAA  L E+  LE ++ + + +K ++ RE I   A+  
Sbjct: 180 DYLALVGDTSDNIPGLAGVGPKTAAKWLNEFETLEGVMAHCAELKPERFREPICAEADKL 239

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           R + KL  L     + +P+  +         L + ++ L     +
Sbjct: 240 RRNLKLTTLN----LGLPVLSVPPVQPQPEALFALIEELGMKTNL 280


>gi|321311667|ref|YP_004203954.1| 5'3'-exonuclease [Bacillus subtilis BSn5]
 gi|320017941|gb|ADV92927.1| 5'3'-exonuclease [Bacillus subtilis BSn5]
          Length = 296

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/296 (29%), Positives = 146/296 (49%), Gaps = 14/296 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             N L LVDG + ++RAF+AT +         G+P N + GF   L   ++  +     +
Sbjct: 2   NNNKLLLVDGMALLFRAFFATAVHRNFMINDSGVPTNGVNGFLKHLITAVETFQ----PT 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H    +D  + T+RN+++ DYKANR   PE L+PQ  L + A    GI  I   G+EADD
Sbjct: 58  HVICCWDMGSKTYRNDLFQDYKANRSAPPEELIPQFDLAKEAAAELGIMNIGFAGYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            I T   +   E   +T+++ D+DL+QL++    +    K     +    E   ++ G+ 
Sbjct: 118 CIGTLADLFANE-ADITVVTGDRDLLQLLTDKVSVALLQKGIGNYKVYTKETFYEETGVM 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+ ++ ++AL GDS DN PG+ GIG KTA  L++EY  ++ +L N S +  K ++  I +
Sbjct: 177 PKALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLENLS-LLPKGQQGKIQQ 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                 +SRKL  +   VP+   L+  +       +    L+  +   +   +   
Sbjct: 236 GLSDLEMSRKLAEIHCSVPLACTLKDALFT-LQMEQAADMLRRHQIKGIERMLEKL 290


>gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 99/330 (30%), Positives = 161/330 (48%), Gaps = 24/330 (7%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +  + E   ++ + S + + L  N I   +          +T TGRL++  P+LQN P  
Sbjct: 460 LAALCEVASINTLLSNFIEPLQGNDIKSASDGRVHCSLNINTETGRLSARRPSLQNQPAL 519

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR+AF++ P K L+ ADY Q+ELR+LAH+A    +   F+   D H   A  ++
Sbjct: 520 EKDRYKIRQAFVAAPGKSLVVADYGQLELRLLAHLADCKSMKAAFKAGGDFHSRTAMNMY 579

Query: 787 GVNIEKVSPQ-----------------------MRRHAKTINFSIIYGISPFRLATQLRI 823
               E V  +                        RR AK +NFSI YG +   LA   ++
Sbjct: 580 PHVREAVEKERVLLEWESHGKPPAPLLKDIFGSERRKAKMLNFSIAYGKTAMGLAKDWKV 639

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              EA   +  ++   P +  + ++ K     +  V T+ GR  H  +INS  + +R+  
Sbjct: 640 KVDEAKATVDLWYSDRPEVLAWQKERKQEAHTSLRVHTLLGRARHLPDINSSNALLRSHM 699

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           ERAAIN P+QGSAAD+   AM+ ++++ +  +L  K+LLQ+HDE++ E P E    A ++
Sbjct: 700 ERAAINTPVQGSAADVAMCAMLEINRNSKLRELGWKLLLQVHDEVILEGPSESAQEAKEL 759

Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           ++ SM      +  L V L V+   + +W 
Sbjct: 760 VIKSMMYPFNGENFLDVELVVDGDYAESWY 789



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 99/305 (32%), Gaps = 71/305 (23%)

Query: 393 KIITDTMDAFHSKPIAIA----ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
                 +D     P+        S            +     L V       G       
Sbjct: 28  DTEVAEIDVKKESPVGHGRMTCFSIYCGPSANFGNGKNR---LWVDVLDGGDG------- 77

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS----SH 503
           IL   +++FE+    K+ HN  +DK +L R+GI  +G + D M ++ + DS R      +
Sbjct: 78  ILEVFRRYFEDPSIKKVWHNYSFDKHILSRHGIHPQGFYADTMHLARLHDSARRGAKGGY 137

Query: 504 DIASIAQK------WLSYTRKE----ILKS-------RKSSIPIDKIS---------DSQ 537
            +  ++        +L +  +E    ++          K+++  D            D  
Sbjct: 138 SLEVLSADEKVMDGYLGHLTEEDDITLVGKKSMKELFGKANLKKDGSPGKIKTIPPVDEL 197

Query: 538 VQEHAIENSNV------ILQLWLL---LRPKL-----------IVEKLLHVYERLDKPMI 577
            ++  + ++ +       +  W L   L+ KL               +   YE+  +P  
Sbjct: 198 QRDGELRDAWIHYSTFDTVCTWRLFVSLQHKLSNTPWNVVDLKEKGSMYDFYEKYWRPFG 257

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE------KFNLSSPKQLGD 631
           +V+ QME  G+ +D D L  V                  + +        N+ S  Q+  
Sbjct: 258 EVLVQMEADGMLVDCDHLATVEKVARAQQEISVSRFRKWAAKYCPDAAMMNVGSDAQIRQ 317

Query: 632 ILFTK 636
            LF  
Sbjct: 318 FLFGG 322


>gi|56693107|ref|YP_164694.1| hypothetical protein LP65_gp059 [Lactobacillus phage LP65]
 gi|54633608|gb|AAV35879.1| orf59 [Lactobacillus phage LP65]
          Length = 988

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 140/805 (17%), Positives = 280/805 (34%), Gaps = 174/805 (21%)

Query: 329 SQFSSLSDQTSKINSEQT-PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQ----- 382
           S F+ L D     + ++T   +L + R        ++   Y  + +    ++  +     
Sbjct: 130 SVFADLLDVLKYPSDKETLRPQLNMTRHFIKYGNKLDLGEYELVKDYSRAKEIFKNILGL 189

Query: 383 ---KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
              K            T+T++++  +++   ++IS  D +       +T F   S    Q
Sbjct: 190 PPLKAPLYKIIGIDFETNTLESWRTNARMTMMSISWKDHQGVVIPIDKTGFQPFSEEEKQ 249

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE------DIML 491
           D          I   + + F+++   K+ HN K+D  +L      + G +      D  +
Sbjct: 250 D----------IKHNVNQIFKSDKIWKVLHNGKFDITMLK----DVNGLDRSIKCIDTEV 295

Query: 492 MSYV--LDSGRSSHDIASIA----------------------QKWLSYTRKEILKSRK-- 525
           M YV    + +    +  IA                      + + ++   EI K RK  
Sbjct: 296 MYYVGFSQAKKVKKGLKQIARAFTDMGGYEQPLEEFKNEYLEKHYKNWYNAEIEKYRKAL 355

Query: 526 --------------------------SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
                                          D I       +A  +++V L+L+  +  +
Sbjct: 356 ELEGKDPDKAKVSKKDYKAPTNEIDGGKFNYDWIDMEVQFPYAAADADVTLRLFNKMVGR 415

Query: 560 LIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-------EISKNLLSLEE 611
           +   +   ++   +   + D ++ +E  GI++D +  +++         ++   +LS   
Sbjct: 416 IKKNRAWVNLVFNIFPRLNDALTTIEHNGIKLDMERNRELHDKYVKHRDDMKNEILSTIP 475

Query: 612 NIYDLSGEKFNLS------------------------------------------SPKQL 629
            I  +  E+ N +                                          +P  +
Sbjct: 476 EIKMIEKERLNFAMEREQIKKIKPADRTKEQKQKFKDYAKNCTGKDGVPNYKFKFTPNDM 535

Query: 630 GDILFTKLK--FPSGAKTKTGQWKT----------TAQDLEQINCGDNPIIKNILEWRQL 677
             +L+  L    P      TG  K            AQ+  +        I    ++ + 
Sbjct: 536 KRLLYDVLGYELPQEPPYVTGNPKNITWKSYSVGKAAQEYLE-ETYKTKFIDLYSKYSKA 594

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE-PNLQNIPIKTDLGQKIRRA 736
                ++ D LP  +  +   V   ++   T T RL+S    N QN   +TD       +
Sbjct: 595 ETALGSFIDKLPE-VRDKDDFVKPSFNPYVTETSRLSSSGAFNAQNQTRRTDNPNDFNYS 653

Query: 737 FISP-------PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           +              L++ DYS +E+  +A ++K   + Q   +  DIH+  A+  F V 
Sbjct: 654 YGVKSMYRSRFKGGILLNMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASLGFHVP 713

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
            ++V+  +R  AK ++F I Y +    LA  L +   EA           P + + +  +
Sbjct: 714 YDEVTKNLRTSAKKVSFGIPYSMGIKTLAKDLGVDEKEAQRIYDAILATMPQVKQAMADS 773

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           + F  +  Y ET+ G R     ++S    +R   +R A N  IQGS ++I    +ISVH+
Sbjct: 774 QEFAARYKYAETLNGFRRDLSNVDSILKDVRAKAKRQAFNTEIQGSGSNIVNLGLISVHE 833

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI------------- 956
                 L +K++  +HD ++ +V   E+     ++ +  E    P I             
Sbjct: 834 QFCKRNLKSKIIATVHDSILLDVYPPELAEVYAVVKYCCEHVNFPAIINNDATGYRVPKE 893

Query: 957 ------NLRVPLKVNIKVSNNWQEE 975
                   R P  V  ++  N+ +E
Sbjct: 894 YQLPNNKFRFPFVVEPEIGINYNDE 918


>gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 361

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 137/277 (49%), Gaps = 40/277 (14%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR  F       +++ADYSQ+ELR+LAH+AK   L  +  +  D+ + +AA+   V+++ 
Sbjct: 82  IRNVFCPFKGGLMLAADYSQLELRLLAHLAKDRCLMSILNSGSDVFKQIAAKWKHVDVDS 141

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           V+ + R+ AK + + +IYGI    L  QL +   +AA +++ +  ++ G+  Y+ +    
Sbjct: 142 VTAEQRQQAKQMCYGMIYGIGARALGEQLGVCEEDAAAFMESFKSQYKGMKNYLLEVVKQ 201

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL- 911
            R+ GYV+T+ GRR +   I+      RN  ER A+N  +QGSAAD+ + AM+ + + L 
Sbjct: 202 CREKGYVQTLTGRRRYLPAIHHTNPGARNQAERQAVNTTVQGSAADLVKTAMVKIDRRLA 261

Query: 912 -------------------------EDHKL----------ATKMLLQIHDELVFEVPEEE 936
                                    +  +L             ++LQ+HDEL++EV  E+
Sbjct: 262 VEYPATKRSHKHKEEEESGTAPGRRKSRRLQTSTTGFTPPGAFLVLQLHDELIYEVRRED 321

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +   +Q+I   ME A      L V L V +K    W 
Sbjct: 322 VDQVAQLIKTEMENAM----KLSVRLPVKVKFGPTWG 354


>gi|52080710|ref|YP_079501.1| putative 5'-3' exonuclease [Bacillus licheniformis ATCC 14580]
 gi|52786084|ref|YP_091913.1| YpcP [Bacillus licheniformis ATCC 14580]
 gi|319645330|ref|ZP_07999563.1| YpcP protein [Bacillus sp. BT1B_CT2]
 gi|52003921|gb|AAU23863.1| putative 5'-3' exonuclease [Bacillus licheniformis ATCC 14580]
 gi|52348586|gb|AAU41220.1| YpcP [Bacillus licheniformis ATCC 14580]
 gi|317393139|gb|EFV73933.1| YpcP protein [Bacillus sp. BT1B_CT2]
          Length = 295

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/268 (33%), Positives = 147/268 (54%), Gaps = 15/268 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K+  L LVDG + ++R+F+AT +         G+P N + GF   L      +     
Sbjct: 1   MNKK--LLLVDGMALLFRSFFATAVHRNFMLNDKGVPTNGVHGFLKHLL----TAASAFE 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            SH    +D  + T+RN+++ DYKANR + P  L+PQ  + + A +  GI  I + G+EA
Sbjct: 55  PSHVICCWDMGSKTYRNDLFKDYKANRSEPPLELIPQFDMAKEAAEELGILNIGLAGYEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD I T T +  +E   +TI++ DKDL+QL++    +    K     +    E   ++ G
Sbjct: 115 DDCIGTLTAMFSEE-ADITIVTGDKDLLQLLTVNVKVALLQKGIGNYKVYTEESFSEETG 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P+ ++ ++AL GD+ DN PG+ GIG KTA  L++EY  ++ +L N  ++  K ++  I
Sbjct: 174 IEPKALIDIKALMGDTSDNYPGVKGIGEKTAYKLIKEYSTVDRLLENIGQL-TKGQQTKI 232

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEH 261
            E  E  ++SR L  ++ DVP++  L+ 
Sbjct: 233 TECLEDLKMSRILAEIKCDVPLSCSLDD 260


>gi|194017027|ref|ZP_03055640.1| 5'-3' exonuclease [Bacillus pumilus ATCC 7061]
 gi|194011633|gb|EDW21202.1| 5'-3' exonuclease [Bacillus pumilus ATCC 7061]
          Length = 295

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 94/300 (31%), Positives = 161/300 (53%), Gaps = 19/300 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K  H+ LVDG + ++R+FYAT +         G+P N + G+   L   +Q       
Sbjct: 1   MNK--HVLLVDGMALLFRSFYATAVHRNFMINDHGVPTNGVNGYLKHLLTAVQTFE---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H    +D  + T+RNE++ DYKANR + P  L+PQ  L + AT+  GI  I ++GFEA
Sbjct: 55  PTHIVCCWDMGSQTYRNELFQDYKANRGEAPVELIPQFDLAKEATEELGIVNIGLKGFEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD I T   + +KE   VT+++ DKDL+Q+++    +    K     +        ++ G
Sbjct: 115 DDCIGTLATLYQKE-ARVTVLTGDKDLLQILNEQVTVALMQKGIGNYKLYTKALFEEEMG 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P+ ++ ++AL GD+ DN PG+ GIG KTA   +Q Y  ++ +L N   +    +++ +
Sbjct: 174 ISPKALIDMKALMGDASDNYPGVKGIGEKTALKFIQTYETIDGLLENVHELTA-TQQKKM 232

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT---KLINRVAT 290
               E  +LSR L  ++ DVP++ P++   + + N  R  + L+  +      ++NR++T
Sbjct: 233 QAGLEDLKLSRLLAEIKCDVPLSCPMDETKM-NINQERAAAMLRHHQIKGIEPMMNRLST 291


>gi|156377033|ref|XP_001630662.1| predicted protein [Nematostella vectensis]
 gi|156217687|gb|EDO38599.1| predicted protein [Nematostella vectensis]
          Length = 425

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 193/442 (43%), Gaps = 68/442 (15%)

Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKI 533
           GI++ G  ED  + S++LD G     +  +  ++ S     +       S   S+ +   
Sbjct: 9   GITVSGECEDPKVASWLLDPGCKEKTLQHLVGQYASSKMVILEGEVPCGSLTGSLALASQ 68

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +    +  A   S ++  +   LR  L+ + L + +++++ P++  + +ME+ G    + 
Sbjct: 69  NTLSGRVRACTESVLVFSMMKKLRLDLVEDGLDYAFQKVEMPVMQCLVRMELNGFGFSEA 128

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
              ++ A +   L +LE+  Y L+   F+L+SP  +   +  +LK               
Sbjct: 129 ECDRLKAILQAKLRTLEQEAYRLANHSFSLTSPDDVAREVLERLK--------------- 173

Query: 654 AQDLEQINCGDNPIIKNILEWRQ----LSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
                      +P+ + ILEWR+    L+K+          H +    R++   S   T 
Sbjct: 174 ---------SLHPLPRIILEWRRVNCALTKVVFPVQREKLFHKSLHMSRIYPT-SQTHTT 223

Query: 710 TGRLASLEPNLQNIPIKTD---------------------------------LGQKIRRA 736
           TGR++  EPNLQN+P   +                                     +R A
Sbjct: 224 TGRVSFNEPNLQNVPRDFEIELPSVIAESPPLGTRRRENIQKPARSDHSGMSCAVSMRTA 283

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F+      L++ADYSQ+ELR++AH+A  + L +V     D+ RM+A  + G+    V  +
Sbjct: 284 FVPCAGGVLLAADYSQLELRLIAHLADDSRLRKVLNGGGDVFRMIAGSLAGLEPGSVDDK 343

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            R+ AK I + IIYGI    L  QL +   +A+ YI+++  RF GI  Y++ T    R+ 
Sbjct: 344 QRQRAKQICYGIIYGIGAKALGEQLELGEEDASMYIEKFKSRFSGIRRYLKSTVEQCRKT 403

Query: 857 GYVETIFGRRIHYDEINSPKSS 878
           GYV TI  RR +   +NS    
Sbjct: 404 GYVTTITKRRRYLPAVNSTHPH 425


>gi|29833256|ref|NP_827890.1| 5'-3' exonuclease [Streptomyces avermitilis MA-4680]
 gi|29610378|dbj|BAC74425.1| putative 5'-3' exonuclease [Streptomyces avermitilis MA-4680]
          Length = 309

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 26/313 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q    L L+D +S  +RA++  P   +  DG PVNA+ G    + +L+++ R + + +  
Sbjct: 3   QPTRRLMLLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLEFIDRLVKDHRPDELVACM 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAI 110
              +      +R ++ P YKA+R            ++P+ L PQ+P++     A GI  +
Sbjct: 63  DADW---RPQWRVDLIPSYKAHRVAEERESGPDEEEVPDTLSPQVPVIENVLDALGIARV 119

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKID 164
            ++G+EADD+I T+T  A+     V I++ D+DL QLV       +   +K     +  D
Sbjct: 120 GVEGYEADDVIGTFTARAK---GPVDIVTGDRDLYQLVDDERGIRVLYPLKGVGLLQLTD 176

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
              + +K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  I+      
Sbjct: 177 EAWLREKYGVDGGGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIMAAVDDP 236

Query: 225 KQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           K K    +R+ + E      ++ K+V +  DVP+      L     +   L         
Sbjct: 237 KAKLTPSQRKRLDESRPYLAVAPKVVRVAGDVPLPDVDITLPGAPRDPAALDELAARWGL 296

Query: 282 TKLINRVATTYDC 294
              ++R+ +T   
Sbjct: 297 GGSLHRLLSTLQA 309


>gi|271967135|ref|YP_003341331.1| DNA polymerase I [Streptosporangium roseum DSM 43021]
 gi|270510310|gb|ACZ88588.1| DNA polymerase I [Streptosporangium roseum DSM 43021]
          Length = 306

 Score =  245 bits (625), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 142/312 (45%), Gaps = 20/312 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L L+D  S  +RAFY  P      DG+PVNA+ G  +M+  L++      + + 
Sbjct: 1   MVAMPGLMLLDTPSLYFRAFYGVPESMTAPDGMPVNAVRGLIDMIAMLVRQHSPGELVAC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +      FR    P YKA+R       ++P+ L PQ+P++     A GI  + + G
Sbjct: 61  MDADW---RPAFRVAAIPTYKAHRVASGDVEEVPDTLAPQVPVIEQVLDAVGIARLGVPG 117

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHV 168
           +EADD++ T    A+++   V I++ D+D+ QLV       +  T +     + +D   V
Sbjct: 118 YEADDVMGTLAVRAKRQ---VDIVTGDRDMFQLVDDAQPIRVLYTARGVKNLDLVDEAAV 174

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
             ++G+P         L GD  D +PG+PG+G KTAA L+  +G+LE +L          
Sbjct: 175 AARYGVPGRSYADFATLRGDPSDGLPGVPGVGDKTAAALITRFGSLEALLRAVDEGGDLT 234

Query: 229 --RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             +R  +    +  R++  +V +  DVPI      L +   +   L + ++       + 
Sbjct: 235 AGQRAKLSAARDYLRVAPAVVQVARDVPIPELDPALPVRARDPQALAALVERYGLGGPMG 294

Query: 287 RVATTYDCDAAN 298
           R++      ++ 
Sbjct: 295 RLSEALSPASSA 306


>gi|295839822|ref|ZP_06826755.1| 5'-3' exonuclease [Streptomyces sp. SPB74]
 gi|295827663|gb|EDY44700.2| 5'-3' exonuclease [Streptomyces sp. SPB74]
          Length = 312

 Score =  244 bits (624), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 146/312 (46%), Gaps = 27/312 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   L L+D +S  +RA++  P   R  DG PVNA+ G  + +  L+Q+ R +S+ +  
Sbjct: 5   TQTPRLMLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIAHLVQDHRPDSLVACM 64

Query: 62  AVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAI 110
              +      +R  + P YKA+R            ++P+ L PQ+P++     A GI  +
Sbjct: 65  DADW---RPEWRVALIPGYKAHRVAGETEAGPDEEEVPDTLSPQVPVIEAVLDALGIARL 121

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKID 164
            + G+EADD+I T T  A      V I++ D+DL QLV       +   +K     +  D
Sbjct: 122 GVPGYEADDVIGTLTTRAR---GPVDIVTGDRDLFQLVDDARGVRVLYPLKGVGSLQATD 178

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
              + +K+G+       L  L GD  D +PG+PGIG KTAA LL  YG+L+ I   A+  
Sbjct: 179 EAVLREKYGVDGPGYADLATLRGDPSDGLPGVPGIGEKTAAKLLAAYGDLDGIRAAAADP 238

Query: 225 KQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALE 280
             K    +R  + E      ++  +V +  D+ +   L+  L  E  +G  L +  +   
Sbjct: 239 ASKITPAQRRRLTESGPYLDVAPTVVRVARDLAVPADLDDRLPDEPRDGEALAALGERWG 298

Query: 281 FTKLINRVATTY 292
               ++RV  T 
Sbjct: 299 LGGSLDRVLRTL 310


>gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 808

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 101/331 (30%), Positives = 157/331 (47%), Gaps = 25/331 (7%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +  + E   ++ + S + + L  N I   +          +T TGRL++  P+LQN P  
Sbjct: 475 LAALCEVASINTLLSNFIEPLQGNDIKSVSDGRVHCSLNINTETGRLSARRPSLQNQPAL 534

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR+AF++ P K L+ ADY Q+ELR+LAH+A    +   F    D H   A  ++
Sbjct: 535 EKDRYKIRQAFVAAPGKALVVADYGQLELRLLAHLADCKSMKAAFIAGGDFHSRTAMNMY 594

Query: 787 GVNIEKVSPQ-----------------------MRRHAKTINFSIIYGISPFRLATQLRI 823
               E V                           RR AK +NFSI YG +   LA    +
Sbjct: 595 PHVREAVEKDRVLLEWEGLEKPPVPLLKDMFGSERRKAKMLNFSIAYGKTAMGLAKDWNV 654

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              EA   +  ++   P +  + ++ K    +   V T+ GR  H  +INS  S +R+  
Sbjct: 655 KLDEAKATVDLWYSDRPEVLAWQKERKQEAHETLRVHTLLGRARHLPDINSSNSLLRSHM 714

Query: 884 ERAAINAPIQ-GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
           ERAAIN P+Q GSAAD+   AM+ ++++    +L  K+LLQ+HDE++ E P E    A +
Sbjct: 715 ERAAINTPVQQGSAADVAMCAMLEINQNARLRELGWKLLLQVHDEVILEGPLESAEEAKE 774

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +++ SM      +  L V L V+   + NW 
Sbjct: 775 LVIKSMMYPFNGENILDVELVVDGDYAENWY 805



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 119/342 (34%), Gaps = 68/342 (19%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLE---TIGSASFKIITDTMDAFHSKPIAIAIS 412
               + P++  S   + + +  +  V++L         +       +D     P+     
Sbjct: 3   PYEERRPVSIKSVMIVDSVEKAEMVVEQLMSEYKNVVHACDTEVAGIDVKKESPVG---- 58

Query: 413 TLDQKDDTSFKVETI-FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                  T F +      D     ++          ++L   K++FE+    K+ HN  +
Sbjct: 59  ---HGQITCFSIYCGPGADFGYGKNRLWVDVLDGGDDVLRVFKRYFEDPSIQKVWHNYSF 115

Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDS----GRSSHDIASIA--QKWLSYT-------- 516
           DK +L R+GI  +G + D M ++ + DS     +  + +  ++  +K + Y         
Sbjct: 116 DKHILSRHGIHPQGFYADTMHLARLNDSARRGSKGGYALEVLSADRKVMDYCSKNFTEED 175

Query: 517 ---------RKEILKSRKSSI-----------PIDKIS-DSQVQE----HAIENSNVILQ 551
                     KE+    K              P+D++  D ++++    ++  ++    +
Sbjct: 176 GSVFVGKKSMKELFGKAKLKKDGTPGKIKVVPPVDELQRDEELRDAWIHYSTLDAVCTWR 235

Query: 552 LWLLLRPKL-----------IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           L++ L+ KL               +   YE+  +P  +V+ QME  G+ +D D L  V  
Sbjct: 236 LFVSLQHKLSNTPWSVAELRHKGSMYDFYEKYWRPFGEVLVQMEAYGMLVDYDHLATVEK 295

Query: 601 EISKNLLSLEENIYDLSGE------KFNLSSPKQLGDILFTK 636
                           +        + N+ S  Q+   LF  
Sbjct: 296 LARAQQKISVSRFRKWAARYCPNAARMNVGSDAQIRQFLFGG 337


>gi|296329507|ref|ZP_06871994.1| 5'3'-exonuclease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674832|ref|YP_003866504.1| 5'3'-exonuclease [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153389|gb|EFG94251.1| 5'3'-exonuclease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413076|gb|ADM38195.1| 5'3'-exonuclease [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 319

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/296 (29%), Positives = 145/296 (48%), Gaps = 14/296 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             N L LVDG + ++RAF+AT +         G+P N + GF   L   ++  +     +
Sbjct: 25  NNNKLLLVDGMALLFRAFFATAVHRNFMINESGVPTNGVNGFLKHLITAVETFQ----PT 80

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H    +D  + T+RN+++ DYKANR   P  L+PQ  L + A    GI  I   G+EADD
Sbjct: 81  HVVCCWDMGSKTYRNDLFQDYKANRNAPPVELIPQFDLAKEAAAELGIMNIGFAGYEADD 140

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            I T   +   E   +TI++ D+DL+QL++    +    K     +    E   ++ G+ 
Sbjct: 141 CIGTLAALYANE-ADITIVTGDRDLLQLLTDKVSVALLQKGIGNYKVYTKETFYEETGVL 199

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+ ++ ++AL GDS DN PG+ GIG KTA  L++EY  ++ +L N S +  K ++  I +
Sbjct: 200 PKALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLENLS-LLPKGQQGKIQQ 258

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                 +SRKL  +   VP+   L+  +       +    L+  +   +   +   
Sbjct: 259 GLSDLEMSRKLAEIHCSVPLVCTLKDALFT-LQMEQAADMLRRHQIKGIERMLEKL 313


>gi|16079259|ref|NP_390083.1| 5'3'-exonuclease [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310115|ref|ZP_03591962.1| hypothetical protein Bsubs1_12111 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314437|ref|ZP_03596242.1| hypothetical protein BsubsN3_12032 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319359|ref|ZP_03600653.1| hypothetical protein BsubsJ_11958 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323635|ref|ZP_03604929.1| hypothetical protein BsubsS_12087 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730895|sp|P54161|EX53_BACSU RecName: Full=5'-3' exonuclease
 gi|1256623|gb|AAA96617.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634620|emb|CAB14118.1| 5'3'-exonuclease [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484621|dbj|BAI85696.1| hypothetical protein BSNT_03280 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 296

 Score =  244 bits (623), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 86/296 (29%), Positives = 145/296 (48%), Gaps = 14/296 (4%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             N L LVDG + ++RAF+AT +         G+P N + GF   L   ++  +     +
Sbjct: 2   NNNKLLLVDGMALLFRAFFATAVHRNFMINDSGVPTNGVNGFLKHLITAVETFQ----PT 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H    +D  + T+RN+++ DYKANR   P  L+PQ  L + A    GI  I   G+EADD
Sbjct: 58  HVVCCWDMGSKTYRNDLFQDYKANRSAPPVELIPQFDLAKEAAAELGIMNIGFAGYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
            I T   +   E   +T+++ D+DL+QL++    +    K     +    E   ++ G+ 
Sbjct: 118 CIGTLADLFANE-ADITVVTGDRDLLQLLTDKVSVALLQKGIGNYKVYTKETFYEETGVM 176

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+ ++ ++AL GDS DN PG+ GIG KTA  L++EY  ++ +L N S +  K ++  I +
Sbjct: 177 PKALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLENLS-LLPKGQQGKIQQ 235

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                 +SRKL  +   VP+   L+  +       +    L+  +   +   +   
Sbjct: 236 GLSDLEMSRKLAEIHCSVPLACTLKDALFT-LQMEQAADMLRRHQIKGIERMLEKL 290


>gi|297161907|gb|ADI11619.1| 5'-3' exonuclease [Streptomyces bingchenggensis BCW-1]
          Length = 308

 Score =  244 bits (623), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 152/315 (48%), Gaps = 30/315 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L L+D SS  +RA++  P   R  DG PVNA+ G  + + +L+Q+   + + + 
Sbjct: 1   MTR--RLMLLDTSSLYFRAYFGVPESVRAPDGTPVNAVRGLLDFIARLVQDHHPDDLVAC 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR-------------PKIPEMLLPQLPLVRLATQAFGI 107
               FD+    +R ++ P YKA+R              ++P+ L PQ+P++     A GI
Sbjct: 59  MD--FDW-RPKWRVDLIPSYKAHRVAEEAPAPDGVDQEEVPDTLSPQVPVIDEVLDAVGI 115

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--CLYDTVKE----E 161
             +   G+EADDII T    A      V I++ D+DL QLV  +    +   VK     +
Sbjct: 116 ARVGADGYEADDIIGTLAGRAS---GPVDIVTGDRDLFQLVDDSRAARVLYPVKGVGTLQ 172

Query: 162 KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
            ID + + +K+G+       L  L GD+ D +PG+PGIG KTAA LL  YG+L  I+  A
Sbjct: 173 VIDEDALREKYGVGGAGYAELALLRGDTSDGLPGVPGIGEKTAAKLLASYGDLAGIMAAA 232

Query: 222 SRIKQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           +    K    +R  + E  E   ++ K+V + +DVP+      L  +  +   +    + 
Sbjct: 233 ADPASKLTPAQRRRLEEAREYVAVAPKVVRVASDVPLPAFDPALPRQPRDARAVEELAER 292

Query: 279 LEFTKLINRVATTYD 293
                 + R+ +T +
Sbjct: 293 WGLGGSLRRLLSTLE 307


>gi|256081122|ref|XP_002576822.1| DNA polymerase I [Schistosoma mansoni]
 gi|238662107|emb|CAZ33059.1| DNA polymerase I, putative [Schistosoma mansoni]
          Length = 787

 Score =  244 bits (623), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 114/501 (22%), Positives = 208/501 (41%), Gaps = 95/501 (18%)

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
            + + ++ P   ++++ME  G  ++ D L +    + K    LE   Y L+G+ F + SP
Sbjct: 283 SLLDVIELPCQSLLARMESNGFILNLDDLNKCHDSLLKACKQLESVAYRLAGQPFPMDSP 342

Query: 627 KQLGDILFTKLKFPS-------------------GAKTKTGQWKTTAQDLEQINCGDNPI 667
           K++  +LF  L  P                      + ++         L       +P+
Sbjct: 343 KEISKVLFKWLHLPQITDPNDLIMNRKRSQSYLLNGRNRSNHLPKATNTLLSKLTNLHPL 402

Query: 668 IKNILEWRQLSKIKSTYADSLPNHIN--------KRTQRVHTFYSLASTMTGRLASLEPN 719
              I+EWR ++ I     +SL +            +  R+   Y +  T TGR+ S+ PN
Sbjct: 403 PAVIMEWRHINGILEKIFNSLVSTCRLIYISSTGDQPLRISPTYDVY-TATGRIISIMPN 461

Query: 720 LQNIPIKTDLGQ----------------------------------------KIRRAFIS 739
           LQ++P    +                                          + R AF +
Sbjct: 462 LQSVPKDIVIDWSKLHYKSSTVDNNCLNNNSEKWTSPFDQILSELPKSIETIRPRCAFHA 521

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMR 798
           P    LIS D+ Q+ELR+LA+ +K   L ++        + +AA    +    +V+   R
Sbjct: 522 PVGGLLISGDFCQLELRLLAYFSKDVELLKLLSVVEHASQTLAAHWLNIPHSNQVTDVQR 581

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           + AK + ++I+YG+    LA+QL + +  A   I  + + +PG+ ++I+       + G 
Sbjct: 582 QQAKQLCYAILYGMGSQTLASQLNVSQQNAQKLIDSFLNTYPGVQKFIKTAVLTAHREGQ 641

Query: 859 VETIFGRRIHYDEIN-----------------SPKSSIRNI-----NERAAINAPIQGSA 896
           ++T+ G       +N                 S K  +RN       E  A+N  IQGSA
Sbjct: 642 IKTLNGHIRLLPVLNSKTVFDSGTPYELNCNWSKKYDLRNHFAVIKAEGQAVNIIIQGSA 701

Query: 897 ADITRRAMISVHKSLEDHKL--ATKMLLQIHDELVFEV-PEEEITTASQIIVHSMEKACL 953
           ++I + AM++V +++    +     ++L  HDEL++EV PE       ++I  +M     
Sbjct: 702 SEIAKIAMLAVDEAIHSSNIPGNAHLVLHEHDELIYEVFPESSAKQFGELIRQTMSN-TS 760

Query: 954 PKINLRVPLKVNIKVSNNWQE 974
              N+ VPL V +++ NNW +
Sbjct: 761 KHCNIDVPLPVKLRIGNNWSD 781


>gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock]
          Length = 595

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 117/627 (18%), Positives = 244/627 (38%), Gaps = 80/627 (12%)

Query: 371 IVNTKDIQQWVQKLETI-GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           +   +D+  +   +       +    T  +D +              +  T  +   + +
Sbjct: 18  VETPEDLAGFRDFIRAHLNCLAVDTETTGLDIYSDT-----FECRLVQFGTQDEAWVVPV 72

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRG--- 485
           +L     +D        +  +  L+K         +  N  YD  VL   +GI M     
Sbjct: 73  ELGDVFIED-------VRIAIGALRKV--------VLQNASYDLQVLDQCFGIEMEDLWP 117

Query: 486 -FEDIMLMSYVLDS-----GRSSHDIASIAQKWLSYTRKEILKSRKSSIPID-------- 531
              D  +++ ++D      G   H +  +  +++S  + E +K   + +  +        
Sbjct: 118 RVLDTQILAKLVDPRPFEAGGFGHSLEELIAEFISKEQAETVKKLMAKLAQEHKTTKAKI 177

Query: 532 ----KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
                +   +  ++A  ++    ++   L P  +V  +       +  + ++ S ++  G
Sbjct: 178 WATIDLFHPEYLKYAGMDTIFTARVCKALTP--LVPDVSRGLVAYEHEISEICSYIDRQG 235

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
             +D +  +++S +   +    E   +   G +  ++S + L + L  ++      +T+T
Sbjct: 236 FLLDVEYAQELSDKWLADQQVWEAIAFTEYGVE-KVNSTEDLAEGL-EEMGVKITGRTET 293

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G+ +     LE++    N +     E ++L K + T+     +  +    R HTF +   
Sbjct: 294 GKRQVDKTLLEKLVAEGNELATIAQEAKKLGKWRKTWVQKFLDTRDAED-RCHTFVNPLQ 352

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             T R++      Q +P        +RR F++     + S DY   ELR+LA ++    +
Sbjct: 353 ARTSRMSITGIPAQTLPASD---STVRRCFLAEEGDVMASIDYQTQELRVLAALSNDQTM 409

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
            + F+   D+H+M A      +  +V+   R+  K  NF  +YG     LA Q ++    
Sbjct: 410 IEAFKTGADLHQMTA------DAAQVT---RKVGKMANFLTVYGGGAKTLAEQAKVDFPT 460

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A   +  +   +PG+    +K      + GY+ T  GRR+  D   S           +A
Sbjct: 461 AKRTLDAFARTYPGVARLSKKLGTEAGRKGYIVTPVGRRLPVDSSRS----------YSA 510

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +N  +Q S+ D+T RA+I +HK+         + L IHDE+V  +P  E   A+  I   
Sbjct: 511 LNYMVQSSSRDVTCRALIRLHKA----GYTPYLRLPIHDEIVASLPASEAERAAAHIGQL 566

Query: 948 MEKACLPKINLRVPLKVNIKVSN-NWQ 973
           M +   P +     +  + +V   +W 
Sbjct: 567 MAEQMGPVL-----IGTDPEVGKRSWG 588


>gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik]
 gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik]
          Length = 600

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 121/632 (19%), Positives = 244/632 (38%), Gaps = 84/632 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
            +  +    + +++K +     +    T  +D + S       +   +      + E   
Sbjct: 19  EEPEDLDGFRDFIRKHQNC--LAVDTETTGLDIYSS-------TFRCRLVQFGTQDEAWV 69

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRG-- 485
           + +    +Q        T+E L  L K         +  N  YD  VL H +GI M    
Sbjct: 70  LPVDESPTQ----LQQETREALDKLGKI--------VMQNASYDLQVLDHCFGIKMEDLW 117

Query: 486 --FEDIMLMSYVLDS-----GRSSHDIASIAQKWLSYTRKEILKSRKSSIPID------- 531
               D  +++ ++D      G   H +  +  +++S  + + +K   + +  +       
Sbjct: 118 PKVLDTQILAKLVDPRPYGAGGFGHSLEELIAEFISKDQAKDVKGLMAKLAKEHKTTKAK 177

Query: 532 -----KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                 +   +   +A  ++    ++   L    +V  +       +  + ++ S ++  
Sbjct: 178 IWSTIDLFHPEYLTYAGMDTIFTARICRKLTR--LVPDVSRGLVPYEHKISEICSYIDRK 235

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G Q+D +  +++S          E  ++   G   N +S +Q  D++  +  +    +T 
Sbjct: 236 GFQLDVEYAQELSDRWLYEKSVWEAILFTEYGLD-NPNSNEQCADVI-EEAGWKIKGRTD 293

Query: 647 TGQWKTTAQDLEQINCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
           TG+ +  A   +++     P    +   I E ++L K ++T+       +     R HTF
Sbjct: 294 TGKRQVNADLYDEMIKKGTPEQAALAAMIQEAQKLGKWRNTWVQKFLE-VKDSDDRCHTF 352

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
            +     T R++      Q +P        +RR F++ P   + S DY   ELR+LA ++
Sbjct: 353 VNPLQARTSRMSITGIPAQTLPAGD---WTVRRCFLAEPGHVMSSIDYQTQELRVLAALS 409

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822
               + + F+   D+H+M A           +   R+  K  NF  +YG     LA Q  
Sbjct: 410 GDKTMIEAFKTGADLHQMTA---------DAAQVPRKIGKMANFLTVYGGGAKTLAEQAN 460

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882
           I    A   ++ +   +PG+  Y +K      + GY+    GRR+  D          + 
Sbjct: 461 IDFPTAKRVLEAFAKTYPGVARYSKKLAAEAGRQGYIVNGMGRRLPVD----------SS 510

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
              +A+N  IQ S+ D+T RA+I +H    +      + L IHDE+V  +P E+    ++
Sbjct: 511 RTYSALNYMIQSSSRDVTCRALIRLH----EAGFTPYLRLPIHDEIVASLPAEKAEWGAK 566

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSN-NWQ 973
            I   M +   P     V +  + +V   +W 
Sbjct: 567 KIGQLMAEEMGP-----VTIGTDPEVGKRSWG 593


>gi|308497564|ref|XP_003110969.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
 gi|308242849|gb|EFO86801.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
          Length = 927

 Score =  244 bits (622), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 112/425 (26%), Positives = 191/425 (44%), Gaps = 40/425 (9%)

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             L+      V  M  TGI  D            + +  LEE I+ L+  KFN+ S  ++
Sbjct: 521 FHLEMSSCQSVLNMFYTGISFDHSKCNSFITNTRQRIELLEEEIWRLAHGKFNIDSSNEV 580

Query: 630 GDILFTKLKF--PSGAKTKTGQWK-TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
            +++F +L    P  +  K  Q    T + + +     + I+  ILE+R    I+ T   
Sbjct: 581 ANVIFHRLGLIYPETSSCKMKQRHLPTNKLILEQMKNQHKIVGKILEYRH---IQHTLTQ 637

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAFISPPTKKL 745
            L       T+          T TGR+ +  PNLQN+P + +  G   R+ F +   + L
Sbjct: 638 CLLPLSIYSTRIHCRME--MCTATGRILTTVPNLQNVPKRVSTEGLSARQLFKASSGRIL 695

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           ISAD+ Q+ELR+LAH++  + L ++     D+   ++ E             R   K + 
Sbjct: 696 ISADFKQLELRVLAHLSNDSKLIELICADRDLFGELSVEW---------NFSRDVVKQLC 746

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP----------------GIHEYIEKT 849
           + +IYG+ P  LA   ++  +EA   +  +F  FP                G+  YI +T
Sbjct: 747 YGLIYGMGPKTLAELTKVKVAEAEKMLCSFFSMFPGLYLYLSNKGTYLYVTGVRSYINET 806

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K  V +   V+TI GR+       +     +   ER A+N  IQG+A++I + A++ +  
Sbjct: 807 KEHVSKEECVQTILGRKKFLKSGLT--GEEKARVERVAVNYTIQGTASEIFKVAIVEIES 864

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            ++ +    +++L IHDE + E PE      S+II   M+ +      LRVP+K+++K  
Sbjct: 865 KIKAYG--ARIVLTIHDEFLVECPENRTPVISEIIRDCMQSSLSDI--LRVPMKISLKTG 920

Query: 970 NNWQE 974
             W +
Sbjct: 921 TTWGD 925


>gi|328881266|emb|CCA54505.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 335

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 150/309 (48%), Gaps = 28/309 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ + + + + +    
Sbjct: 33  RLMLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFITRLVQDHQPDDLVACWD--- 89

Query: 66  DYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           D     +R ++ P YKA+R            +IP+ L PQ+P++     A GI  I   G
Sbjct: 90  DDWRPQWRVDLIPSYKAHRVAVVTETGPDEEEIPDTLSPQVPVIEEVLAALGIARIGAAG 149

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHV 168
           +EADD+I T    A      V I++ D+DL QLV    +  +    K     + +D + +
Sbjct: 150 YEADDVIGTLAGRAR---GPVDIVTGDRDLFQLVDDARSVRVLYPRKGVGDCDLVDADMI 206

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS----RI 224
           + K+G+ P++     AL GD+ D +PG+ GIG KTAA L+ EYG+L  +   A     ++
Sbjct: 207 VSKYGVRPDQYADFAALRGDASDGLPGVKGIGEKTAAQLITEYGDLAGVRAAAEDRTSKL 266

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
              KRR  I+E A    ++  +V +  DVP+      L     +   L + +K       
Sbjct: 267 TPAKRR-GIVEAAAYLDVAPTVVKVAGDVPLPEFDATLPTAPRDPAALDALVKRWGLGGA 325

Query: 285 INRVATTYD 293
           + R+    D
Sbjct: 326 VGRLLPVLD 334


>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
          Length = 1067

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/351 (29%), Positives = 165/351 (47%), Gaps = 48/351 (13%)

Query: 668  IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            I ++ E   +  + S +   L  ++++ +  RVH   ++ +T TGRL++  PNLQN P  
Sbjct: 717  IASLCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPAL 775

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 KIR+AF++ P   L+ ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 776  EKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMY 835

Query: 787  GVNIEKV---------SPQ-----------------MRRHAKTINFSIIYGISPFRLATQ 820
                E V          P+                  RR AK +NFSI YG +   L+  
Sbjct: 836  PHVREAVENGQVILEWHPEPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRD 895

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
             ++   EA + +  +++    + ++ E  K    ++GYV T+ GR   +    S   + R
Sbjct: 896  WKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLTLLGRSRRFPA--SKSRAQR 953

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL------------------ 922
            N  +RAAIN P+QGSAAD+   AM+ +  + +  KL  ++LL                  
Sbjct: 954  NHIQRAAINTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQWSLLDWKLSNKGNLYWK 1013

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            QIHDE++ E P E    A  I+V  M K    +  L V L V+ K + NW 
Sbjct: 1014 QIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNWY 1064



 Score =  107 bits (266), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 142/403 (35%), Gaps = 94/403 (23%)

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
           V D      KG  I+  +  D +  T+  +  +   SK+     P  +     +   +  
Sbjct: 206 VGDNMDVNPKGEGIQRPLISDKSSGTANGNKNTVAISKVERSTEPSNVRENLGKIYDKVL 265

Query: 363 INNDSYTKIVNTKDIQQWVQKLETI---GSASFKIITDTMDAF------HSKPIAIAIST 413
           I       + N +  +  V KL         S       ++        H + I  +I  
Sbjct: 266 I-------VDNVQAAKDTVAKLVNQFRNHVHSCDTEVSGIEVKEETPVDHGELICFSIYC 318

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
             + D  + K              D  G+N   +E+L+  K +FE+    K+ HN  +D 
Sbjct: 319 GPEADFGNGKSC---------IWVDVLGENG--REVLAEFKPYFEDSFIRKVWHNYSFDS 367

Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASI---------------AQKWLS 514
            ++  +GI + GF  D M M+ + DS R     + + ++               A+    
Sbjct: 368 HIIRNHGIEISGFHADTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGK 427

Query: 515 YTRKEILKSRKSSI-----------PIDKISDSQVQE---HAIENSNVILQLWLLLRPKL 560
            + K I   RK              P++++     +    ++  ++   L+L+  +  KL
Sbjct: 428 ISMKTIFGKRKLKKDGSEGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKL 487

Query: 561 IVEK------------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
            +              +L  Y    +P  +++ +ME  GI +D++ L ++     + +  
Sbjct: 488 QLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKMEAEGILVDREYLAEI-----EKVAK 542

Query: 609 LEENIYDLSGEKF--------------NLSSPKQLGDILFTKL 637
            E+    ++G +F              N+ S  QL  + F  +
Sbjct: 543 AEQQ---VAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 582


>gi|182439682|ref|YP_001827401.1| putative 5'-3' exonuclease [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178468198|dbj|BAG22718.1| putative 5'-3' exonuclease [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 307

 Score =  243 bits (619), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 146/314 (46%), Gaps = 29/314 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R + + + 
Sbjct: 1   MTR--RLMLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIGRLVQDHRPDDLVAC 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIP 108
           +   +      +R ++ P YKA+R             ++P+ L PQ+P++     A GI 
Sbjct: 59  WDNDW---RPQWRVDLIPTYKAHRVAEETPAGQTDEEEVPDTLSPQVPIIEDVLAALGIA 115

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EK 162
            + +  +EADD+I T    A      V I++ D+DL QLV       +   +K     + 
Sbjct: 116 RVGVTPYEADDVIGTLAGRAT---GPVDIVTGDRDLYQLVDDARQVRVLYPLKGVGTLQV 172

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            D   +  K+G+     V L  L GD  D +PG+PGIG KTAA LL  YG+L+ I+    
Sbjct: 173 TDEAWLRGKYGVDGAGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDAYGDLDGIMAAVD 232

Query: 223 RIKQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
             K K    +R+ + E      ++ K+V +  DVP+      L  E  +   L +  +  
Sbjct: 233 DPKAKLTPSQRKRLDEARAYVAVAPKVVRVAGDVPLPDFDPALPREPRDPAALEALAERW 292

Query: 280 EFTKLINRVATTYD 293
                + R+ T   
Sbjct: 293 GLGGALQRLLTALQ 306


>gi|333028231|ref|ZP_08456295.1| putative 5'-3' exonuclease [Streptomyces sp. Tu6071]
 gi|332748083|gb|EGJ78524.1| putative 5'-3' exonuclease [Streptomyces sp. Tu6071]
          Length = 302

 Score =  243 bits (619), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 27/306 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R +++ +     +  
Sbjct: 1   MLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDALVACMDADW-- 58

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R  + P YKA+R            ++P+ L PQ+P++     A GI  + + G+E
Sbjct: 59  -RPEWRVSLIPSYKAHRVAEETEAGPDEEEVPDTLSPQVPVIEAVLDALGIARLGVPGYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIK 170
           ADD+I T    A      V I++ D+DL QLV       +   +K     +  D   + +
Sbjct: 118 ADDVIGTLATRA---HGPVDIVTGDRDLFQLVDDARGVRVLYPLKGVGSLQVTDEALLRE 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--- 227
           K+G+       L  L GD  D +PG+PGIG KTAA LL  YG+L+ I   A+    K   
Sbjct: 175 KYGVDGPGYADLATLRGDPSDGLPGVPGIGEKTAAKLLAAYGDLDGIRAAAADPASKITP 234

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLIN 286
            +R  ++E A    ++  +V +  D+P+   L+  L  E  +G  L +  +       ++
Sbjct: 235 AQRRRLIESAPYLDVAPAVVRVARDIPVPEDLDERLPDEPRDGEVLTALGERWGLGGSLD 294

Query: 287 RVATTY 292
           RV  T 
Sbjct: 295 RVLHTL 300


>gi|270264832|ref|ZP_06193096.1| exonuclease IX [Serratia odorifera 4Rx13]
 gi|270041130|gb|EFA14230.1| exonuclease IX [Serratia odorifera 4Rx13]
          Length = 252

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/263 (34%), Positives = 145/263 (55%), Gaps = 19/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP-VNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           HL +VD  + I R  +A         G P VNA     + L +L+Q+SR     +H   +
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSPCVNACQ---HALQQLIQHSR----PTHAVAV 48

Query: 65  FDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           FD    + ++R++I PDYKA R  +PE L  ++P +R A +A G+      G EADD+ A
Sbjct: 49  FDEDDRSESWRHQILPDYKAGRSPMPENLQQEMPQLRQAFEALGVACWHSPGNEADDLAA 108

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T T      G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P+++   
Sbjct: 109 TLTAKVAGGGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVQQEFGVAPQQLADY 168

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L G S   IPG+ GIG KTA LLLQ+ G L+ +  +  ++ +K R   + ++ + A +
Sbjct: 169 WGLAGISSSKIPGVAGIGPKTAVLLLQQAGTLDGLYQDLEQVAEKWRG-KLQQHRDMAYV 227

Query: 243 SRKLVMLRTDVPITIPLEHLILE 265
           S+K+  LRTD+ +T  L+ L L 
Sbjct: 228 SKKVATLRTDLTLTGNLQQLRLP 250


>gi|318075728|ref|ZP_07983060.1| 5'-3' exonuclease [Streptomyces sp. SA3_actF]
          Length = 302

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 27/306 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R +++ +     +  
Sbjct: 1   MLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDALVACMDADW-- 58

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R  + P YKA+R            ++P+ L PQ+P++     A GI  + + G+E
Sbjct: 59  -RPEWRVSLIPSYKAHRVAEETETGPDEEEVPDTLSPQVPVIEAVLDALGIARLGVPGYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIK 170
           ADD+I T    A      V I++ D+DL QLV       +   +K     +  D   + +
Sbjct: 118 ADDVIGTLATRA---HGPVDIVTGDRDLFQLVDDARGVRVLYPLKGVGSLQVTDEALLRE 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--- 227
           K+G+       L  L GD  D +PG+PGIG KTAA LL  YG+L+ I   A+    K   
Sbjct: 175 KYGVDGPGYADLATLRGDPSDGLPGVPGIGEKTAAKLLAAYGDLDGIRAAAADPASKITP 234

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLIN 286
            +R  ++E A    ++  +V +  D+P+   L+  L  E  +G  L +  +       ++
Sbjct: 235 AQRRRLVESAPYLDVAPAVVRVARDIPVPEDLDERLPDEPRDGEVLTALGERWGLGGSLD 294

Query: 287 RVATTY 292
           RV  T 
Sbjct: 295 RVLHTL 300


>gi|253988091|ref|YP_003039447.1| exonuclease IX [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779541|emb|CAQ82702.1| exodeoxyribonuclease ix-like protein [Photorhabdus asymbiotica]
          Length = 264

 Score =  242 bits (617), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 94/265 (35%), Positives = 143/265 (53%), Gaps = 17/265 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   I    N L +L+Q++      +H   +F
Sbjct: 15  HLLIVDALNLIRRI-HAV-------QGSP--CIPACENALRQLIQHTN----PTHAVAVF 60

Query: 66  DYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D  A +  +R++I PDYKA R  +P+ L  ++P +R++ +  GI     QG EADD+ AT
Sbjct: 61  DEEARSNSWRHQILPDYKAGRSPMPDNLKQEMPQIRISFEQQGIACWHAQGHEADDLAAT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G+ VTI+STDK   QL+SP  C+ D  ++  +D+  V +++G+ P+++    
Sbjct: 121 LAVKVAAAGYHVTIVSTDKGYCQLLSPNICIRDYFQKRWLDMPFVQQEFGVAPQQLPDYW 180

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPGIPGIG KTA +LLQ+ G L+N+  N  + +  K R  +    E A +S
Sbjct: 181 GLAGISSSKIPGIPGIGPKTATILLQQSGTLDNLFQNLKQ-QPDKWRNKLESNKEIAFIS 239

Query: 244 RKLVMLRTDVPITIPLEHLILEDCN 268
           RK+  LRTD+ +   L+ L L   N
Sbjct: 240 RKVASLRTDLALNGNLQQLRLTTAN 264


>gi|331013568|gb|EGH93624.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 443

 Score =  242 bits (617), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 154/336 (45%), Gaps = 23/336 (6%)

Query: 329 SQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG 388
             ++ L  ++   + ++  ++   E   +         +Y  I+       W++KL    
Sbjct: 9   ELYAELEFKSWIEDLQRDAKRAGQELAVEEPTVEAKEAAYEVILEQSQFDAWLKKLNAAP 68

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
             +F   ++  DA  ++ + ++ +T    +     +   ++ +     +D+         
Sbjct: 69  LFAFVTQSNGTDAQRAQLVGLSFATQTH-EAAYIPLTHSYMGVPQQLDRDT--------- 118

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR--------YGISMRGF-EDIMLMSYVLDSG 499
           +L  LK   E+    K+G + K+   +L           GI ++G   D +L SYVLDS 
Sbjct: 119 VLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDST 178

Query: 500 RSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            + HD  S+  K+L++     +EI       +  D+I+  Q  ++A E +++ L+L  + 
Sbjct: 179 ATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVF 238

Query: 557 RPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
             +L     L  V   ++ P++ V++ +E  G  +D +LL   S E+   + +LE   + 
Sbjct: 239 EARLAAIPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFA 298

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           ++GE+FNL SPKQLG IL+ KL  P  +KT TGQ  
Sbjct: 299 IAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQAS 334


>gi|226377780|ref|YP_002790829.1| DNA polymerase [Lactobacillus phage Lb338-1]
 gi|225921558|gb|ACO37071.1| DNA polymerase [Lactobacillus phage Lb338-1]
          Length = 1046

 Score =  242 bits (617), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 120/530 (22%), Positives = 215/530 (40%), Gaps = 87/530 (16%)

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL------LHVYERLDKPMIDVVSQME 584
           + I    +  +A  +++  L++   L   +  + L        +Y      ++  ++ ++
Sbjct: 466 EWIPMEIMYYYAAGDADATLRVHNKLLQLIREDPLNKDGRIEDLYLNFYPKLVHALACIQ 525

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDL---------------------------- 616
             G+Q+D   L +++   +     L  +I  L                            
Sbjct: 526 NHGMQVDDAYLTKITGLYADKAEELNNDIRKLPAVKDFEEYQLGLYNEGVKEFAKPPKER 585

Query: 617 -------------SGEKFNLSSPKQLGDILFTKLKFPSG--------------------- 642
                           KF+ S    +  IL+  L +                        
Sbjct: 586 DKTIFGYRAKFKDDKYKFSASRANDIATILYKNLGYALPYGKDFIKDTVWKKNKPEEQII 645

Query: 643 ----AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                  K       +Q  E  +     + K + ++  ++KI S++ DSL  + +  T +
Sbjct: 646 WSDYKTNKVALDYVNSQAKEAGDKDTEDLTKMLAKFSIVNKISSSFTDSLREYTD-DTMK 704

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIK------TDLGQKIRRAFISP-PTKKLISADYS 751
           +H  +S   T T RL+S + NLQN+P +       +    I+R F+S  P  KLI+ DYS
Sbjct: 705 LHGHFSAVGTETSRLSSSQINLQNLPAEKSNTHLFNYKYPIKRMFVSRFPNGKLINLDYS 764

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            +E  ILA + K   +   F    DIH   AA ++ V  E V  + R+ AK+I F +IYG
Sbjct: 765 SLEFHILALVTKEDSMTGAFLEGKDIHTSNAALMYDVPYEDVIVEQRKAAKSIGFGLIYG 824

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
                LA  L +   EA + I  +F   P +  +I+K   F   NGYV T+ G R +   
Sbjct: 825 KGDAALAEDLGLSLEEAQEKINTFFKSKPRVKAFIDKAHKFAENNGYVTTLNGFRRNLGG 884

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
             S     R+  +R ++N  IQGS A +T  A+I +++ L   K  + ++  +HD ++ +
Sbjct: 885 AFSTDYGKRSKAQRQSVNTIIQGSGAILTNTAVIILNELLAKSKFKSVIIATVHDSILID 944

Query: 932 VPEEEITTASQIIVHSMEKACLPKI-------NLRVPLKVNIKVSNNWQE 974
            PEEEI   S + ++ ME    P +        +R P++  + +   + +
Sbjct: 945 CPEEEIDKVSTLALYVMEHLDYPWLFTNYKGKRIRYPIEAEVDIGKTYND 994



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 65/206 (31%), Gaps = 33/206 (16%)

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
           S+   K+N   + + L     +           Y ++ N +  ++ + K        +  
Sbjct: 146 SEPNRKVNRNASLRLLGEYLAKGDKALVPERPDYFEVTNIQQAREVMAKPVETAKFGWDT 205

Query: 395 ITDTMDAFH--SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            T+T+      +K I I+ +  + K   +  V          T+ +        K++   
Sbjct: 206 ETNTLKPNKKGAKIIVISFAWAEGK-ACAIPVGHCERYSETGTTLNGKPSYFTKKDVKEI 264

Query: 453 LK----------------------KFFENEHFLKIGHNIKYDKLVLHRYG----ISMRGF 486
                                      ++   +K+GHNI +D+  +   G    +     
Sbjct: 265 FDMLDDLTRAKTIGDIHPKVPVTMTLPKDTRLIKVGHNIAFDEHFMLATGHAKELDFVNV 324

Query: 487 EDIMLMSYV---LDSGRSSHDIASIA 509
            D +   Y+    D   S H ++ +A
Sbjct: 325 VDTLTGHYLEISQDKKTSRH-LSDLA 349


>gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40]
 gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40]
          Length = 703

 Score =  242 bits (617), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 158/687 (22%), Positives = 280/687 (40%), Gaps = 159/687 (23%)

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDL--SVHTSQDSTGKNTLTKEILSYLKKFFENE 460
           + K + I I T D K   S    +  I L    +   +        K     LK    ++
Sbjct: 8   YKKIVGIDIETWDGKKGGSLDPYSGKIALVQIAYDRNNIVLYRPWEKNFEEALK-VLSDK 66

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSG--------------------- 499
             LK+GHN+K+D    +   I      D M+ S ++ +G                     
Sbjct: 67  DVLKVGHNLKFDLKFFYMNNIYPEPIFDTMIASQMIYAGLDEPDEISEVLEALKDDLTTE 126

Query: 500 ----------------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
                           + SH + ++ ++ L+     + K  ++S    ++S++Q +E+AI
Sbjct: 127 EVAIFDVFGKKRTKATKFSHSLQAVLKRELNIF---LPKDVQNSNWGGELSEAQ-KEYAI 182

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ------ 597
            +   +  L + L  K+    + +V+  L+   + V+  +E+TG++ID++  K+      
Sbjct: 183 NDVKYLKDLSIELWKKIKALNIENVFM-LEMKFLPVLVMLELTGVKIDKEGWKKKMEKEN 241

Query: 598 ------------------VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
                             VS +  K ++ L E+      EK NL+SP Q+  I       
Sbjct: 242 QELLELEKELKKEIYEKFVSKQSEKMMVGLFEDA---EYEKINLNSPLQMAKI----FGL 294

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY-ADSLPNHINKRTQR 698
           P+ +K               +   ++P IK  +E+++ +K+ +TY  + L         R
Sbjct: 295 PNVSK-------------LTLEKIEDPTIKKYVEYKKKAKLVTTYSKEYLEKLT--ENNR 339

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           + + YS   T TGR++S  PNLQN+P         +R   +      + ADYSQ+ELRIL
Sbjct: 340 LMSDYSQTKTATGRISSSNPNLQNVPS------WFKRYITAEEGYVPVFADYSQVELRIL 393

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRL 817
           A+++    +     NS D+H   A +I+ +  ++ V P++R+ AKT++F+I YG S + L
Sbjct: 394 AYLSGDEAMIDS-CNSKDMHSENARKIYKIPPDQPVPPELRKKAKTVSFAIPYGSSAYGL 452

Query: 818 ATQLRI-PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI---- 872
             +      +EA + I+ +F+ FP + E++EK+     QNG      GR  +Y +I    
Sbjct: 453 VVRGMFSSLAEAEEAIEGFFNSFPKVKEFLEKSAKSA-QNGITRDALGRVRNYKKIYISE 511

Query: 873 -----------------------------NSPKSSIRNINE------------------- 884
                                        NS K + +                       
Sbjct: 512 DEKGALKILMFRLPSGISKDEFIKEVLEKNSFKDAAKIFGMDEQMLQLAISAYEKTKKLA 571

Query: 885 ---RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
              R   N PIQ ++A IT+ AM+ + + L        M L +HD + FE+ +E I  A 
Sbjct: 572 KIAREGQNHPIQATSASITKTAMVDLLEYLSMTGYG-YMTLTVHDSIFFEIKKEFIFDAL 630

Query: 942 QIIVHSMEKACLPKINLRV-PLKVNIK 967
             I   ME+A    +   + P+ V + 
Sbjct: 631 PKIKEIMEQAGPKVVPGIITPVDVEVG 657


>gi|313678741|ref|YP_004056481.1| 5'-3' exonuclease family protein [Mycoplasma bovis PG45]
 gi|312950734|gb|ADR25329.1| 5'-3' exonuclease family protein [Mycoplasma bovis PG45]
          Length = 305

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/300 (30%), Positives = 144/300 (48%), Gaps = 22/300 (7%)

Query: 1   MQKENHL-FLVDGSSFIYRAFYATPLLSR------KHDGLPVNAIAGFCNMLWKLLQNSR 53
           M  +N+L  LVDG+  ++++FYA+    +        DG   N +  F   L+KL++   
Sbjct: 1   MNSDNNLMLLVDGNFLVFQSFYASYNKYKPNSVLVAKDGTTTNGVHVFFQTLFKLMR--- 57

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                +H  + FD    T R+E+Y +YKA R K PE++  Q  L +    A  I   E  
Sbjct: 58  -LYNPTHMFIAFDAKGKTKRHEVYNNYKAGREKAPEIIFEQFDLTKKILSAMNIKWFEKV 116

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKI---DIE 166
           G+EADD+IAT T       F   I S DKDL+QLV+   C+   V+      +     I 
Sbjct: 117 GYEADDLIATITK--HNNQFKNYIYSKDKDLLQLVNENNCIIKVVRNPGNFTEYSLETIN 174

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
             +  +GI P ++   + L GD+ D + G+ GIG K A  LL E+G+LE I  N  +I  
Sbjct: 175 EFVDIYGINPNQIPDYKGLAGDTSDRLKGVAGIGPKKAVSLLNEFGSLEAIYENIGKISG 234

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           K  +E +    E+A   +KL +L  DV +   +++  +   N       L    F  +++
Sbjct: 235 KT-KEYLENDYESAHFCKKLAILNPDVEMDTDIDNYKIV-LNRNEAEEILNEFGFYNVLD 292


>gi|149182897|ref|ZP_01861356.1| hypothetical protein BSG1_01425 [Bacillus sp. SG-1]
 gi|148849400|gb|EDL63591.1| hypothetical protein BSG1_01425 [Bacillus sp. SG-1]
          Length = 307

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 152/294 (51%), Gaps = 14/294 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           ++ NHL L+DG + ++R+F+AT +  +      G P N + GF   L   +++       
Sbjct: 10  KQNNHLLLIDGMALLFRSFFATAVSGQFMINSKGQPTNGVQGFMKHLLMAVEHIN----P 65

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV +D  + TFRNEIY DYKANR   P  L+PQ  L +   + F +  + + GFEAD
Sbjct: 66  THTAVCWDMGSSTFRNEIYSDYKANRNAPPVELIPQFDLAKEVAEGFALYNLGMAGFEAD 125

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGI 174
           D I T    A K+   V+I+S D+DL+QL+     +    K          +  +++ G+
Sbjct: 126 DCIGTIAKSAPKDT-KVSILSGDQDLLQLLDDNIDVVLLKKGFGNYLTYSKDFFMEEKGL 184

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            PE+ + ++AL GD+ D  PG+ GIG KTA  L+QE+ +++ IL +   +    +R+ I 
Sbjct: 185 TPEQFIDVKALMGDTSDGYPGVKGIGEKTAVKLIQEHLHIQGILDSLHLLTPS-QRKKIE 243

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
              +   LSR+L  ++ DVP+   +E             S ++ LE   L   +
Sbjct: 244 SDLDMLHLSRQLAEIKCDVPLEFNMEAARWGAIEPDA-FSLIEDLELKALRRFL 296


>gi|224121808|ref|XP_002330658.1| predicted protein [Populus trichocarpa]
 gi|222872262|gb|EEF09393.1| predicted protein [Populus trichocarpa]
          Length = 310

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 150/290 (51%), Gaps = 26/290 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNA---------IAGFCNMLWKLLQNSRKESIA 58
            L+DG+S IYRA++    L++ H G   +A         I    + +  +L       + 
Sbjct: 1   MLIDGTSVIYRAYFKL--LAKVHHGHLTHADGNGDWVLTIFSALSFIIDVL-----GFMP 53

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           SH  V+FD+  + FR+ +Y  YK+NRP  P+ ++  LP ++ A +A  +  IE+ G EAD
Sbjct: 54  SHAVVVFDHDGLNFRHTLYSLYKSNRPPTPDTVIQGLPYLKAAIKAMSVKVIEVPGVEAD 113

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKW-G 173
           D+I T    + K+GF V ++S DKD  Q++SP+  L              +E   +K+ G
Sbjct: 114 DVIGTLAVNSVKDGFKVRVVSPDKDFFQILSPSLRLLRIAPRGLEMVSFGMEDFAEKYGG 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           + P + V + AL GD  DNIPG+ GIG   A  L+  +G LEN+L    +++ +  R+ +
Sbjct: 174 LKPSQFVDVMALMGDKSDNIPGVEGIGVVHAVELISRFGTLENLLKCVDQVEGESIRKAL 233

Query: 234 LEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDC--NGPRLISFLKA 278
            + A  A LS++L  LR ++P   +      LI +    NG +  + L A
Sbjct: 234 RQNANQAVLSKELAKLRCELPEYMVPFATTDLIFKKPEDNGEKFTNLLTA 283


>gi|295097359|emb|CBK86449.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 268

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 130/262 (49%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P        +     L+   + S  +H   +F
Sbjct: 21  HLLIVDALNLIRRI-HAV-------QGTP------CKDTCLHALEQLIRHSEPTHAVAVF 66

Query: 66  DYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D  A    +R++  PDYKA R  +P+ L  ++P +R A +  G+P     G EADD+ AT
Sbjct: 67  DDEARNTGWRHQRLPDYKAGRAPMPDDLHAEMPAIRAAFEQRGVPCWGAHGNEADDLAAT 126

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL+SPT  + D  ++  +D   +  ++G+ PE++    
Sbjct: 127 LAVKVASAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAPFIASEFGVSPEQLPDYW 186

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PG+ GIG K+AA LL E+ +LE I      + +K  R+ +  + E A + 
Sbjct: 187 GLAGISSSKVPGVAGIGPKSAAQLLTEFQSLEGIYARLDEVPEKW-RKKLEAHKEMAFIC 245

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  L+TD+ +   L+ L LE
Sbjct: 246 REVATLQTDLQLDGNLQQLRLE 267


>gi|194696700|gb|ACF82434.1| unknown [Zea mays]
 gi|195654367|gb|ACG46651.1| DNA polymerase I [Zea mays]
          Length = 422

 Score =  241 bits (614), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 171/348 (49%), Gaps = 56/348 (16%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA---------IAGFCNMLWKLLQNSR 53
            ++ + LVDG+S +YR++Y    L++   G   +A         I    ++L  +L    
Sbjct: 90  SKSRIMLVDGTSMMYRSYYKI--LAQLQHGQLEHADGNGDWVLTIFKALSLLLDML---- 143

Query: 54  KESIASHFAVIFDY-------------------PAVTFRNEIYPDYKANRPKIPEMLLPQ 94
            E I SH AV+FD+                     +TFR+ +YP YK+NR   P+ ++  
Sbjct: 144 -EFIPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPAYKSNRTPTPDTVVQG 202

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           +  ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L
Sbjct: 203 MQYLKASIKAMSIKVIEVPGVEADDVIGTLAINSVSAGYKVRIVSPDKDFFQILSPSLRL 262

Query: 155 YDTV----KEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                         +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ 
Sbjct: 263 LRIAPRGSGMVSFGVEDFVKRYGPLKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLIS 322

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILED 266
           ++G+L+N+L +   ++ ++ ++ ++ ++E A L + L  LR+D+P   +      L+ + 
Sbjct: 323 KFGSLDNLLKSVDEVEDERIKQALISHSEQAILCKNLATLRSDLPHYMVPFKTADLVFKK 382

Query: 267 C--NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENK 312
              +G + I  L+ALE              + +++ P++       NK
Sbjct: 383 PQDDGEKFIKLLRALEAY-----------AEGSSVNPIIRRAAYLWNK 419


>gi|296084279|emb|CBI24667.3| unnamed protein product [Vitis vinifera]
          Length = 441

 Score =  241 bits (614), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 94/312 (30%), Positives = 157/312 (50%), Gaps = 44/312 (14%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA---------IAGFCNMLWKLLQNS 52
                + L+DG+S IYRA+Y    L++ H G   +A         I    +++  +L   
Sbjct: 108 SSNGRVMLIDGTSIIYRAYYKL--LAKLHHGYLSHADGNGDWVLTIFAALSLIVDVL--- 162

Query: 53  RKESIASHFAVIFDY------------------PAVTFRNEIYPDYKANRPKIPEMLLPQ 94
             + I SH AV+FD+                    + FR+ +YP YK+NRP  P+ ++  
Sbjct: 163 --DFIPSHVAVVFDHNGIPFGHTSISSKESIMAKGLNFRHTLYPSYKSNRPPTPDTIVQG 220

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           L  ++ + +A  I  IE+ G EADD+I T +  +   G+ V ++S DKD  Q++SP+  L
Sbjct: 221 LQYLKASIKAMSIKVIEVPGVEADDVIGTLSVRSVDAGYKVRVVSPDKDFFQILSPSLRL 280

Query: 155 YDT----VKEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                   +     +E   K++G + P + V + +L GD  DNIPG+ GIG   A  L+ 
Sbjct: 281 LRIAPRGFEMTSFGMEDFAKRYGNLEPSQFVDVISLVGDKSDNIPGVEGIGNVHAVQLIT 340

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILED 266
           ++G LEN+L    ++++++ R+ ++  A+ A LS+ L +LR D+P   +    E LI   
Sbjct: 341 KFGTLENLLQCVDQVQEERIRKALISGADQAVLSKNLALLRCDLPFYMVPFTTEDLIFTK 400

Query: 267 C--NGPRLISFL 276
              NG +  S L
Sbjct: 401 PEDNGEKFTSLL 412


>gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I [Lactobacillus sakei]
          Length = 343

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 111/366 (30%), Positives = 195/366 (53%), Gaps = 34/366 (9%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +F +   T +   +  I   I   D           +  D+++              
Sbjct: 6   TPVAFGVEMLTDNYHTADLIGFYIGAPDH--------WYVSDDVALLAEP---------- 47

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506
                LK + E+    K    +K  ++  +R G+ + G + D++L SY+L++  +S+D+ 
Sbjct: 48  ----VLKDWLEDASHPKAVFGVKRTQVAANRLGVHLAGVDFDLLLASYLLNTTNNSNDLG 103

Query: 507 SIA--QKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           ++A   ++ +    E    K  K ++P +    + + +H ++ +  I  L   L  +L  
Sbjct: 104 TVANLHEYQNVQTDEAVYGKGAKRAVPTE---PALLYQHLVQKAAAIYHLQPQLEEQLKE 160

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +   ++  ++ P+  V++QMEITGI++D   L+Q+ +E S+ L  LEE +Y  +GE FN
Sbjct: 161 HQQFDLFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEAGETFN 220

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++SPKQLG ILF K+  P   KTKTG   +TA D+ +    D PI++ IL++RQ++KI+S
Sbjct: 221 INSPKQLGVILFEKMGLPVVKKTKTGY--STAVDVLEQLRKDAPIVQTILDYRQIAKIQS 278

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-P 741
           TY + L   I+ +  +VHT Y    T TGRL+S++PNLQNIP++   G+KIR+AF+   P
Sbjct: 279 TYVEGLLKSIH-QDNKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLAEGRKIRQAFVPSHP 337

Query: 742 TKKLIS 747
             ++ +
Sbjct: 338 DWQMFA 343


>gi|225434094|ref|XP_002275974.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 338

 Score =  240 bits (613), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 94/312 (30%), Positives = 157/312 (50%), Gaps = 44/312 (14%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA---------IAGFCNMLWKLLQNS 52
                + L+DG+S IYRA+Y    L++ H G   +A         I    +++  +L   
Sbjct: 5   SSNGRVMLIDGTSIIYRAYYKL--LAKLHHGYLSHADGNGDWVLTIFAALSLIVDVL--- 59

Query: 53  RKESIASHFAVIFDY------------------PAVTFRNEIYPDYKANRPKIPEMLLPQ 94
             + I SH AV+FD+                    + FR+ +YP YK+NRP  P+ ++  
Sbjct: 60  --DFIPSHVAVVFDHNGIPFGHTSISSKESIMAKGLNFRHTLYPSYKSNRPPTPDTIVQG 117

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           L  ++ + +A  I  IE+ G EADD+I T +  +   G+ V ++S DKD  Q++SP+  L
Sbjct: 118 LQYLKASIKAMSIKVIEVPGVEADDVIGTLSVRSVDAGYKVRVVSPDKDFFQILSPSLRL 177

Query: 155 YDT----VKEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                   +     +E   K++G + P + V + +L GD  DNIPG+ GIG   A  L+ 
Sbjct: 178 LRIAPRGFEMTSFGMEDFAKRYGNLEPSQFVDVISLVGDKSDNIPGVEGIGNVHAVQLIT 237

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILED 266
           ++G LEN+L    ++++++ R+ ++  A+ A LS+ L +LR D+P   +    E LI   
Sbjct: 238 KFGTLENLLQCVDQVQEERIRKALISGADQAVLSKNLALLRCDLPFYMVPFTTEDLIFTK 297

Query: 267 C--NGPRLISFL 276
              NG +  S L
Sbjct: 298 PEDNGEKFTSLL 309


>gi|328553080|gb|AEB23572.1| 5'3'-exonuclease [Bacillus amyloliquefaciens TA208]
          Length = 295

 Score =  240 bits (613), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 154/295 (52%), Gaps = 14/295 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            N L LVDG + ++R+F+AT +        +G+P N + GF   L   ++  +     +H
Sbjct: 2   NNKLLLVDGMALLFRSFFATAVHRNFMINENGIPTNGVNGFLKHLITAVETFQ----PTH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               +D  + T+RN+++ DYKANR + P  L+PQ  L + A    GI  I I+G+EADD 
Sbjct: 58  VVCCWDMGSKTYRNDLFQDYKANRSEPPLELIPQFDLAKEAAAELGILNIGIKGYEADDC 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + +   E   +TI++ DKDL+QL++    +    K     +    E   ++ G+PP
Sbjct: 118 IGTLSALFSGE-AEITIVTGDKDLLQLLNKQVQVALLQKGIGNYKVYTEEIFREETGVPP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + ++ ++AL GD+ DN PG+ GIG KTA  L++EY N++ +L + S +  K ++  I + 
Sbjct: 177 KALIDIKALMGDTSDNYPGVKGIGEKTAYKLIREYENIDRLLESLS-LLPKGQQTKIQQS 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            +   LSR+L  +  +VP+    E  +        ++  L+  +   +   +   
Sbjct: 236 LKELELSRQLAEIHCEVPLVCTFEEALFSLKMEEAVL-MLRRHQIKGIERMLEKL 289


>gi|91224626|ref|ZP_01259887.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|91190514|gb|EAS76782.1| DNA polymerase I [Vibrio alginolyticus 12G01]
          Length = 680

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 115/551 (20%), Positives = 212/551 (38%), Gaps = 66/551 (11%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-SMRGFEDIMLMS---YV----------- 495
             L+   +      I H+ K +   L + G+   R   D  +     Y+           
Sbjct: 120 KLLQPLLDLPT-TYIAHHAKAELHCLWQLGLTEPRTIWDTCIAERARYLGLHVFDNDRVF 178

Query: 496 -------------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE-- 540
                         ++ R  + + ++A ++  + R  ++KS      ID  S    +E  
Sbjct: 179 DSENAEICARAEHAENNRIRYALNTVASRYDIHHRFNLVKSDLQHSFIDYDSGEFTREQI 238

Query: 541 -HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A E++ V  +L+L    +L ++   H    ++ P +   + ME  G+ +D++    V 
Sbjct: 239 HYAAEDAIVAAKLYLPQMQQLTLQGCYHHLITVEMPWVTTNAAMEWHGVSVDREKCNAVL 298

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
              +  L +L   +  +  +  N +S +Q  +  F +L          G   +    L +
Sbjct: 299 NASTPKLETLRSQLAQMGLD--NPNSHQQ-KETFFRQLNL--LDHFNKGGKYSFKLQLLK 353

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEP 718
                +P I  + E+ ++  I+    D L    I     RVH  +     +TGR +   P
Sbjct: 354 DLAHIHPAIGLLAEFSKVQAIER---DILLRPTIIGSDSRVHPEHKQLEVVTGRQSCASP 410

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NL        L   +R   I      +  ADYSQIE+ I A +     L   F    DI+
Sbjct: 411 NLLG------LPGAMRPLIIPKKGNGIGEADYSQIEVAITAAVYSDKNLIAKFNAG-DIY 463

Query: 779 RMVAAEIFGVNIEKVS------------PQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            ++A E + +++++                 R   KT    I+YG+SPF L ++L I   
Sbjct: 464 TVMAQEFYAIDLDEEDRQCDSDTFKHKHKDKRDIMKTCVLGILYGLSPFGLGSRLEISEL 523

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           EA   + R+   FP +   +E         GYV T  G   H     S   ++       
Sbjct: 524 EAKQLMNRFLAMFPTLKHMMETAPQQAAYRGYVSTSTGLHRH----RSNNGALSRHETNW 579

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            +N P QG+AA + + A   +++  +      K++L +HD  +FE P + +     +  +
Sbjct: 580 MVNMPAQGTAAALFKLAGNRLYQLYK--PYNAKLVLAMHDAFIFEAPLDHMEEVGTLTTN 637

Query: 947 SMEKACLPKIN 957
            M +A +    
Sbjct: 638 VMIQAVIEHFP 648


>gi|157372037|ref|YP_001480026.1| exonuclease IX [Serratia proteamaculans 568]
 gi|166918966|sp|A8GIF8|XNI_SERP5 RecName: Full=Protein Xni
 gi|157323801|gb|ABV42898.1| 5'-3' exonuclease [Serratia proteamaculans 568]
          Length = 251

 Score =  240 bits (612), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/263 (33%), Positives = 147/263 (55%), Gaps = 19/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP-VNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           HL +VD  + I R  +A         G P VNA     + L +L+Q+SR     +H   +
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSPCVNACQ---HALQQLIQHSR----PTHAVAV 48

Query: 65  FDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           FD    + ++R++I PDYKA R  +P+ L  ++P +R A ++ G+      G EADD+ A
Sbjct: 49  FDEDDRSESWRHQILPDYKAGRSPMPDNLQQEMPQLRQAFESLGVACWHSPGNEADDLAA 108

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T T      G  VTI+STDK   QL++P+  + D  ++  +D+  V +++G+ P+++   
Sbjct: 109 TLTAKVAGGGHQVTIVSTDKGYCQLLAPSVQIRDYFQKRWLDMPFVQQEFGVSPQQLSDY 168

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L G S   IPG+ GIG KTA LLLQ+ G+L+ +  +  ++ +K R   + ++ E A +
Sbjct: 169 WGLAGISSSKIPGVAGIGPKTAVLLLQQAGSLDGLYQDLEQVPEKWRG-KLEQHREMAYV 227

Query: 243 SRKLVMLRTDVPITIPLEHLILE 265
           S+++  LRTD+ +T  L+ L L 
Sbjct: 228 SKRVATLRTDLALTGNLQQLRLP 250


>gi|311900125|dbj|BAJ32533.1| putative 5'-3' exonuclease [Kitasatospora setae KM-6054]
          Length = 333

 Score =  240 bits (612), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 143/320 (44%), Gaps = 35/320 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RA++  P   R   G PVNA+ G  + + +L+ +   + + +     
Sbjct: 10  PRLMLLDTASLYFRAYFGVPDSLRSPQGEPVNAVRGLLDFISRLVHDHGPDQLVACMDAD 69

Query: 65  FDYPAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +      +R ++ P YK +R          ++P+ L PQ+P++     A GI  + +  +
Sbjct: 70  W---RPQWRVDLIPTYKTHRVAEAAQAGEEEVPDTLAPQVPVIEQVLDALGIARVGVPDY 126

Query: 116 EADDIIATYTYIAEK--------------EGFAVTIISTDKDLMQLVSP--TTCLYDTVK 159
           EADD+I T    A                +   V I++ D+DL QLV       +   +K
Sbjct: 127 EADDVIGTLATRATGPVRIVTGDRETADYQPARVLIVTGDRDLFQLVDDARGVQVIYPIK 186

Query: 160 E----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
                E I    ++ K+G+   +   + AL GD  D +PG+ GIG KTA  L++EYG+L 
Sbjct: 187 GVGNAEVITEAVLLDKYGVTGAEYADMAALRGDPSDGLPGVKGIGEKTATQLIREYGDLA 246

Query: 216 NILINASRIKQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL 272
            I   A+    K    RR+N+LE A    ++  +V + TDVP+      L  E  +   L
Sbjct: 247 GIRTAAADPLSKLTPARRKNLLEGAAYLDVAPTVVRVATDVPLPAFDPTLPTEPLDPMTL 306

Query: 273 ISFLKALEFTKLINRVATTY 292
            +          + R+  T 
Sbjct: 307 EALTTRWGLGTSLTRLLDTL 326


>gi|282864307|ref|ZP_06273363.1| 5'-3' exonuclease [Streptomyces sp. ACTE]
 gi|282560794|gb|EFB66340.1| 5'-3' exonuclease [Streptomyces sp. ACTE]
          Length = 311

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 139/310 (44%), Gaps = 27/310 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +S  +RA++  P   R  DG PVNA  G  + + +L+Q+ R + + +     +
Sbjct: 8   RLMLLDTASLYFRAYFGVPDSVRAPDGTPVNAARGLLDFIARLVQDHRPDELVACMDADW 67

Query: 66  DYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 +R ++ P YKA+R             ++P+ L PQ+P++     A GI  + + 
Sbjct: 68  ---RPQWRVDLIPTYKAHRVATETAAGLPDEEEVPDTLSPQVPVIEDVLDALGIARVGVA 124

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEH 167
           G+EADD+I T    A      V I++ D+DL QLV       +   VK     +  D   
Sbjct: 125 GYEADDVIGTLAGRAT---GPVDIVTGDRDLYQLVDDARGIRVLYPVKGVGTLQMTDEAW 181

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ- 226
           + +K+G+     V L  L GD  D +PG+PGIG KTAA LL  +G+L  I+         
Sbjct: 182 LREKYGVDGAGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDAFGDLAGIMAAVDDPAAR 241

Query: 227 --KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
               +R  + E      ++ K+V +  DVP+      L  E  +   L +          
Sbjct: 242 LTPSQRRRLDEARAYVAVAPKVVRVADDVPLPDFDPALPREPRDPAALEALAARWGLGGS 301

Query: 285 INRVATTYDC 294
           + R+  T   
Sbjct: 302 LQRLLVTLQA 311


>gi|308173992|ref|YP_003920697.1| 5'3'-exonuclease [Bacillus amyloliquefaciens DSM 7]
 gi|307606856|emb|CBI43227.1| 5'3'-exonuclease [Bacillus amyloliquefaciens DSM 7]
 gi|328912147|gb|AEB63743.1| 5'3'-exonuclease [Bacillus amyloliquefaciens LL3]
          Length = 295

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/265 (32%), Positives = 146/265 (55%), Gaps = 13/265 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            N L LVDG + ++R+F+AT +        +G+P N + GF   L   ++  +     +H
Sbjct: 2   NNKLLLVDGMALLFRSFFATAVHRNFMINENGIPTNGVNGFLKHLITAVETFQ----PTH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               +D  + T+RN+++ DYKANR + P  L+PQ  L + A    GI  I I+G+EADD 
Sbjct: 58  VVCCWDMGSKTYRNDLFQDYKANRSEPPLELIPQFDLAKEAAAELGILNIGIKGYEADDC 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + +   E   +TI++ DKDL+QL++    +    K     +    E   ++ G+PP
Sbjct: 118 IGTLSALFSGE-AEITIVTGDKDLLQLLNKQVQVALLQKGIGNYKVYTEEIFREETGVPP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + ++ ++AL GD+ DN PG+ GIG KTA  L++EY N++ +L + S +  K ++  I + 
Sbjct: 177 KALIDIKALMGDTSDNYPGVKGIGEKTAYKLIREYENIDRLLESLS-LLPKGQQTKIQQS 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEH 261
            +   LSR+L  +  +VP+    E 
Sbjct: 236 LKELELSRQLAEIHCEVPLVCTFEE 260


>gi|326780346|ref|ZP_08239611.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Streptomyces cf. griseus XylebKG-1]
 gi|326660679|gb|EGE45525.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Streptomyces cf. griseus XylebKG-1]
          Length = 302

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 144/307 (46%), Gaps = 27/307 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R + + + +   +  
Sbjct: 1   MLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIGRLVQDHRPDDLVACWDNDW-- 58

Query: 68  PAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               +R ++ P YKA+R             ++P+ L PQ+P++     A GI  + +  +
Sbjct: 59  -RPQWRVDLIPTYKAHRVAEETPAGQTDEEEVPDTLSPQVPIIEDVLAALGIARVGVTPY 117

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVI 169
           EADD+I T    A      V I++ D+DL QLV       +   +K     +  D   + 
Sbjct: 118 EADDVIGTLAGRAT---GPVDIVTGDRDLYQLVDDARQVRVLYPLKGVGTLQVTDEAWLR 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-- 227
           +K+G+     V L  L GD  D +PG+PGIG KTAA LL  YG+L+ I+      K K  
Sbjct: 175 EKYGVDGAGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDAYGDLDGIMAAVDDPKAKLT 234

Query: 228 -KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             +R+ + E      ++ K+V +  DVP+      L  E  +   L +  +       + 
Sbjct: 235 PSQRKRLDEARAYVAVAPKVVRVAGDVPLPDFDPALPREPRDPAALDALAEQWGLGGALQ 294

Query: 287 RVATTYD 293
           R+ T   
Sbjct: 295 RLLTALQ 301


>gi|238751462|ref|ZP_04612954.1| Uncharacterized exonuclease xni [Yersinia rohdei ATCC 43380]
 gi|238710329|gb|EEQ02555.1| Uncharacterized exonuclease xni [Yersinia rohdei ATCC 43380]
          Length = 251

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/264 (31%), Positives = 137/264 (51%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P ++    G            L +LLQ+S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCINACQHG------------LQQLLQHSQ----PTHVVA 47

Query: 64  IFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    A ++R+   PDYKA R  +P+ L  ++P +R A  + G+      G EADD+ 
Sbjct: 48  VFDEDDRADSWRHHCLPDYKAGRSPMPDNLQQEMPQIRDAFMSLGVNCWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLAVKVSGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGVSPHQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAALLLQ+  +LE +      + +K  R+ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTAALLLQQANSLEELYQGLDSVPEKW-RKKLQQHQEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           + +++  L+TD+P+   L+ L L 
Sbjct: 227 ICKQIATLKTDLPLNGNLQQLRLH 250


>gi|302561571|ref|ZP_07313913.1| 5'-3' exonuclease [Streptomyces griseoflavus Tu4000]
 gi|302479189|gb|EFL42282.1| 5'-3' exonuclease [Streptomyces griseoflavus Tu4000]
          Length = 306

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/310 (28%), Positives = 146/310 (47%), Gaps = 26/310 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+++ R + + +     
Sbjct: 3   GRLMLLDTASLYFRAYFGVPESVRAPDGTPVNAVRGLLDFIDRLVKDHRPDQLVACMDAD 62

Query: 65  FDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +      +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + + 
Sbjct: 63  W---RPGWRVELIPSYKAHRVAEERAAGPDEEEVPDTLSPQVPVIESVLDAVGIARVGVA 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEH 167
           G+EADD+I T+T  A      V I++ D+DL QLV       +   +K     +  D   
Sbjct: 120 GYEADDVIGTFTARAA---GPVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQITDEAV 176

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           + +K+G+  +    L  L GD  D +PG+PGIG KTAA LL E+G+L  IL      + K
Sbjct: 177 LREKYGVDGKGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGILAAVDDRQAK 236

Query: 228 ---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
               +R  + E      ++ K+V +  DVP+      L     +   + S  +       
Sbjct: 237 LTPSQRRRLDEARPYLAVAPKVVRVADDVPLPDVGTALPRGPRDPAGVESLGERWGLGGS 296

Query: 285 INRVATTYDC 294
           + R+ TT   
Sbjct: 297 LQRLLTTLSV 306


>gi|254445605|ref|ZP_05059081.1| 5'-3' exonuclease, N-terminal resolvase-like domain family
           [Verrucomicrobiae bacterium DG1235]
 gi|198259913|gb|EDY84221.1| 5'-3' exonuclease, N-terminal resolvase-like domain family
           [Verrucomicrobiae bacterium DG1235]
          Length = 300

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/295 (33%), Positives = 151/295 (51%), Gaps = 17/295 (5%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG +  +RAFYA   L R+ DG P NA+ G+   +WKL    + +  A +  V FD 
Sbjct: 9   LLIDGFNMAFRAFYAVKEL-RRSDGFPTNALYGWVRSMWKL----QDDQKADYVTVFFDL 63

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                +  + P+YKANR + PE    Q+P+++  T+A G   IE+ G E+DD++A Y   
Sbjct: 64  GGAQEKLALLPEYKANRGETPEDFEKQIPIIKQLTKAMGFGHIELDGVESDDLLAAYATR 123

Query: 128 --AEKEGFAVTIISTDKDLMQLVSPTTCLYDT-------VKEEKIDIEHVIKKWGIPPEK 178
             A++E   V I+S DKD  Q V+    L          +   ++D   V +KWG+PPEK
Sbjct: 124 LVAKEEDAIVKIVSADKDFAQSVTDRIHLLLPPPTANPRLGWRELDPAGVEEKWGLPPEK 183

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           MV   +L GD+ DNIPG+PG G KTA   L EYG++  +L NA+ IK  + RE +    E
Sbjct: 184 MVDYLSLIGDTSDNIPGVPGCGPKTAVKWLTEYGDINGVLANAADIKPPRFRELLPTLEE 243

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
              ++RK++    +    + L+       +   L + L+ +E           Y 
Sbjct: 244 RMDINRKIIGFNLNHHEGLELD---TGTLDVSALCAILEEMEMKSHHAEALKRYS 295


>gi|157692705|ref|YP_001487167.1| 5'-3' exonuclease [Bacillus pumilus SAFR-032]
 gi|157681463|gb|ABV62607.1| 5'-3' exonuclease [Bacillus pumilus SAFR-032]
          Length = 295

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 155/289 (53%), Gaps = 16/289 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M K  H+ LVDG + ++R+FYAT +         G+P N + G+   L   +Q       
Sbjct: 1   MSK--HVLLVDGMALLFRSFYATAVHRNFMINDHGVPTNGVNGYLKHLLTAVQTFE---- 54

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H    +D  + T+RNE++ DYKANR + P  L+PQ  L + AT+  GI  I ++GFEA
Sbjct: 55  PTHIVSCWDMGSQTYRNELFQDYKANRGEAPVELIPQFDLAKEATEELGIVNIGLKGFEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD I T   + +KE   VT+++ DKDL+Q+++    +    K     +        ++ G
Sbjct: 115 DDCIGTLAALYQKE-ARVTVLTGDKDLLQILNEQVTVALMQKGIGNYKHYTKALFEEEMG 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           I P+ ++ ++AL GD+ DN PG+ GIG KTA   +Q Y  ++ +L N  ++    +++ +
Sbjct: 174 ISPKALIDMKALMGDASDNYPGVKGIGEKTALKFIQTYKTIDGLLENVHKLTAA-QQKKM 232

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
               E  +LSR L  ++ DVP++ P++   + + N  R  + L+  +  
Sbjct: 233 QAGLEDLQLSRLLAEIKCDVPLSCPIDEAKM-NINQERAAAMLRHHQIK 280


>gi|294811677|ref|ZP_06770320.1| Putative 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|326440139|ref|ZP_08214873.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|294324276|gb|EFG05919.1| Putative 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 329

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 140/307 (45%), Gaps = 26/307 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +S  +RA++  P   R  DG PVNA+ G    + +L+Q+ R + + + +   +
Sbjct: 27  RLMLLDTASLYFRAYFGVPDTVRAPDGTPVNAVRGLLEFIGRLVQDHRPDDLVACWDNDW 86

Query: 66  DYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
                 +R E+ P YKA+R            + P+ L PQ+P++    +A GI  +   G
Sbjct: 87  ---RPHWRVELIPSYKAHRVAVETEAGPDEEEAPDTLTPQVPVIAEVLEALGIARVGADG 143

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHV 168
           +EADD+I T T  A      V I++ D+DL QLV       +   +K     +  D   +
Sbjct: 144 YEADDVIGTLTARAT---GPVDIVTGDRDLFQLVDDARGRRVLYPLKGVGTLQTTDEGWL 200

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-- 226
            +++G+       L  L GD  D +PG+PGIG KTAA LL  +G+L  I+          
Sbjct: 201 RERYGVDGPGYADLALLRGDPSDGLPGVPGIGEKTAAKLLDAFGDLAGIMAAVDDPASRL 260

Query: 227 -KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
              +R  + E      ++ K+V + TD P+      L     +   L +  +       +
Sbjct: 261 TPAQRRRLDEARGYVAVAPKVVRVATDAPLPPFDPALPSAPRDPAALAALGERWGLGGAL 320

Query: 286 NRVATTY 292
            R+ TT 
Sbjct: 321 QRLLTTL 327


>gi|302546696|ref|ZP_07299038.1| probable 5'-3' exonuclease [Streptomyces hygroscopicus ATCC 53653]
 gi|302464314|gb|EFL27407.1| probable 5'-3' exonuclease [Streptomyces himastatinicus ATCC 53653]
          Length = 308

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 149/315 (47%), Gaps = 30/315 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+Q+ R + + + 
Sbjct: 1   MTR--RLMLLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLDFIARLVQDHRPDDLVAC 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR-------------PKIPEMLLPQLPLVRLATQAFGI 107
               FD+    +R E+ P YKA+R              ++P+ L PQ+P++     A GI
Sbjct: 59  MD--FDW-RPAWRVELIPTYKAHRVAEEAPEAAAVDQEEVPDTLSPQVPVIDAVLDAIGI 115

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----E 161
             +   G+EADD+I T    A      V I++ D+DL QLVS      +   VK     +
Sbjct: 116 ARVGSAGYEADDVIGTLAGRAT---GPVDIVTGDRDLFQLVSDERRARVLYPVKGVGTLQ 172

Query: 162 KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
            +D   + +K+G+       L  L GD  D +PG+PG+G KTAA LL  +G+L  I+   
Sbjct: 173 LVDEALLREKYGVDGGGYADLALLRGDPSDGLPGVPGVGEKTAAKLLAAHGDLAGIMAAV 232

Query: 222 SRIKQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
                K    +R+ + E      ++ K+V + +DVP+      +     +   + +  + 
Sbjct: 233 DDPGSKLTPTQRKRLDEARPYLAVAPKVVRVASDVPLPPFDAAVPRTPRDPRAVDALAER 292

Query: 279 LEFTKLINRVATTYD 293
                 + RV +T +
Sbjct: 293 WGLGGSLRRVLSTLE 307


>gi|163784610|ref|ZP_02179449.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880118|gb|EDP73783.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 187

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/191 (42%), Positives = 118/191 (61%), Gaps = 5/191 (2%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L ++DGSS+IYRA+YA P L +   G+P  AI GF  M+ KLL     +    + AVI
Sbjct: 2   KKLAIIDGSSYIYRAYYALPPL-KSPRGIPTGAIYGFIRMISKLLNELNPD----YIAVI 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  TFR++ Y +YK+ R + P+ L  Q+P ++   + FGI  +E +GFEADDIIAT 
Sbjct: 57  FDAPGKTFRHKEYKEYKSQRKETPDDLKVQIPKIKEIIKLFGIKILEKEGFEADDIIATL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               +++G  V II+ DKD++QLV     + + V ++  + E V +K+GI PE+ +  QA
Sbjct: 117 AKKGKEKGLEVYIITPDKDMLQLVEDNIYVLNPVNDKLYNREKVREKYGIYPEQFIYYQA 176

Query: 185 LTGDSIDNIPG 195
           + GD IDNI G
Sbjct: 177 MVGDPIDNIVG 187


>gi|149919308|ref|ZP_01907790.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149819808|gb|EDM79232.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 315

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/290 (34%), Positives = 148/290 (51%), Gaps = 11/290 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           Q  + +FLVD ++ ++R ++A+ P  +      P+NA+  +   +  L    R     + 
Sbjct: 12  QAGDRVFLVDANNLVHRLYHASAPRFAPNDQSTPINAVIAWGQRMRAL----RLGHDPAF 67

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
              IFD P  ++R  + PDYKA R   P+ L  Q   +   +QA G+  +   G EADD+
Sbjct: 68  LLPIFDGPGDSWRRALAPDYKAKRKGQPDELRGQWEPIWHLSQALGLSPLHQPGLEADDL 127

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP------TTCLYDTVKEEKIDIEHVIKKWGI 174
           I  Y     +    VTI+S D DLMQLV        +    D    +++    V  K+G+
Sbjct: 128 IGAYANACVEAELEVTIVSNDSDLMQLVRGPDRGPGSVRQLDAFTGKRVGPVQVEAKFGV 187

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
           PPE++  L ALTG   D +PGIPGIG K A  LL  YG+LE +L NA+ I Q+KR E IL
Sbjct: 188 PPERLAELFALTGSKGDGVPGIPGIGPKIATELLATYGSLEGVLDNAALIPQRKRSERIL 247

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            + + ARLS +L  LR   P+ +PL+ L     +   L +F  A  F   
Sbjct: 248 AHRDDARLSLQLTALRVGEPLPLPLDELERWRPSRRALDAFFGAFGFPNF 297


>gi|258539931|ref|YP_003174430.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
 gi|257151607|emb|CAR90579.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
          Length = 191

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/194 (42%), Positives = 122/194 (62%), Gaps = 5/194 (2%)

Query: 783 AEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            +IFG++  ++V+P MRR AK  NF I+YGIS + LA  + I R +A  +I  YF ++P 
Sbjct: 1   MKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPK 60

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +H+Y+E      R++GYVET+F RR +  +I+S   ++R   ER A+N PIQGSAADI +
Sbjct: 61  VHDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIK 120

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI + K+L++  L  KMLLQ+HDEL+FE P  E+    Q++   M+ A    ++L VP
Sbjct: 121 VAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSA----VSLAVP 176

Query: 962 LKVNIKVSNNWQEE 975
           LKV       W + 
Sbjct: 177 LKVESHYGPTWFDA 190


>gi|156932718|ref|YP_001436634.1| hypothetical protein ESA_00506 [Cronobacter sakazakii ATCC BAA-894]
 gi|166918964|sp|A7MR03|XNI_ENTS8 RecName: Full=Protein Xni
 gi|156530972|gb|ABU75798.1| hypothetical protein ESA_00506 [Cronobacter sakazakii ATCC BAA-894]
          Length = 251

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 127/263 (48%), Gaps = 17/263 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P        +     L+     S  +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGTP------CVDTCLHALEQLIGNSQPTHAVAVF 49

Query: 66  D--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    A  +R+++ PDYKA RP +P+ L  ++P +R A    G+P   ++G EADD+ AT
Sbjct: 50  DDEARAQGWRHQLLPDYKAGRPPMPDDLHQEMPALRDAFTRRGVPCWHVEGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL+ P   + D  ++  +D   +  ++G+ P ++    
Sbjct: 110 LAVKVAAAGHEATIVSTDKGYCQLLRPEIRIRDYFQKRWLDAPFIESEFGVSPGQLADFW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+PGIG K+A  L+ ++G LE +      +  K  R+ +  + E+A + 
Sbjct: 170 GLAGISSSKIPGVPGIGPKSATQLINDFGTLEALYERLDDVPDKW-RKKLEAHRESAFVC 228

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           R +  L+TD+ +   L+ L L  
Sbjct: 229 RAVATLKTDLQLDGNLQQLRLHG 251


>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
 gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
          Length = 968

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/338 (29%), Positives = 158/338 (46%), Gaps = 31/338 (9%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I  + +   +  + S +   L  + I     RVH   ++ +T TGRL++  P+LQN P  
Sbjct: 631 IDALNDVAAIDTLLSNFIIPLQGDDIRGPEGRVHGALNI-NTETGRLSARRPSLQNQPAL 689

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 IR+AF + P   L+ ADY Q+ELR+LAH+A    + + FE   D H   A  ++
Sbjct: 690 EKDRYGIRKAFTAGPGNVLVVADYGQLELRLLAHMAGCKSMQEAFEAGGDFHSRTALGMY 749

Query: 787 ---------------------GVN-------IEKVSPQMRRHAKTINFSIIYGISPFRLA 818
                                GV+       ++ V    RR AK +NFSI YG +   L+
Sbjct: 750 SNIKDAIAKGEVVLEYGEQEEGVDEKDRPALVKDVFASERRKAKVLNFSIAYGKTAHGLS 809

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
                   EAA+ ++ ++   P + ++ E  K    +   V T+ GR  +  + +S   +
Sbjct: 810 KDWGTSLEEAANTVELWYSDRPEVRDWQEVQKKMAVEKNLVRTLLGRVRNLPDASSKNEA 869

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            ++   RA+IN PIQG AADI   AM+ + +     +L  K+L+QIHDE++ E PEE   
Sbjct: 870 FKSHALRASINTPIQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKD 929

Query: 939 TASQIIVHSMEKACLPKIN-LRVPLKVNIKVSNNWQEE 975
            A  +  + ME      +N L V L V+   +  W + 
Sbjct: 930 EALALTKYHMENPFPGHVNLLDVALAVDGDYAKTWYDA 967



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 129/397 (32%), Gaps = 85/397 (21%)

Query: 346 TPQKLFLERLQKLSQYPINN---DSYTKIVNTKDIQQWVQKLETIG-------SASFKII 395
            P K+ L+  Q      I     D    +   ++ ++ ++ L             +    
Sbjct: 145 EPSKMALDEAQVNEDEEIATGLRDEVQTVETVEEARRVLKILLDNAGTAKRPLYHACDTE 204

Query: 396 TDTMDAFHSKPIAIA----ISTLDQKD-DTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
              +D     P+        S     D + + + E+    L V T +   G       + 
Sbjct: 205 VAYIDVSDQTPVGHGQVTCFSVFCGPDVNFAPEGESKRSLLWVDTLRGGEG-------VW 257

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE-DIMLMSYVLDSGRS---SHDI 505
              K++FEN +  K+ HN  +D+ V+  + GI + GF  D M M+ + +S R     + +
Sbjct: 258 EVFKEYFENPNVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARLWNSNRGLDGGYSL 317

Query: 506 ASIAQ---------KWLS---------YTRKEILKSRKSSI-----------PIDKISDS 536
            +++          + L             K+I    K              P+++I + 
Sbjct: 318 EALSSSAEVMSDCAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTIILPPVEEIQED 377

Query: 537 -----QVQEHAIENSNVILQLWLLLRPKL------------------IVEKLLHVYERLD 573
                +  E++  ++     L   L  KL                      L   Y    
Sbjct: 378 VEQRDKWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLWDFYTFYL 437

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-----GEKF-NLSSPK 627
               ++++QME  G+ +D++ L        ++    EE     +     G K  N+ S  
Sbjct: 438 AEFGNLLTQMERNGLLVDKEHLANAEKMALEDKRVAEEYFRTWASAKCEGAKLMNVGSGL 497

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           Q+  +LF   K     K      +   Q+  +    D
Sbjct: 498 QIRQLLFAGAKNKRRDKPGVELVREFTQESTEWLAWD 534


>gi|238763990|ref|ZP_04624946.1| Uncharacterized exonuclease xni [Yersinia kristensenii ATCC 33638]
 gi|238697807|gb|EEP90568.1| Uncharacterized exonuclease xni [Yersinia kristensenii ATCC 33638]
          Length = 251

 Score =  239 bits (609), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G    N     LQ     S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVNACQHALQQLLSHSQPTHAVA 47

Query: 64  IFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++PL+R A  + G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQRLPDYKAGRSPMPDNLQQEMPLIREAFHSLGVNCWSSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLAIKIGGAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPYQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTA LLLQ+  +LE +      I +K  R+ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTATLLLQQASSLEELYQQLDSIPEKW-RKKLQQHQEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           + +++  L+TD+P++  L+ L L
Sbjct: 227 ICKQIATLKTDLPLSGNLQQLRL 249


>gi|154686447|ref|YP_001421608.1| YpcP [Bacillus amyloliquefaciens FZB42]
 gi|154352298|gb|ABS74377.1| YpcP [Bacillus amyloliquefaciens FZB42]
          Length = 295

 Score =  239 bits (609), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/265 (32%), Positives = 146/265 (55%), Gaps = 13/265 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            N L LVDG + ++R+F+AT +        +G+P N + GF   L   +   +     +H
Sbjct: 2   NNKLLLVDGMALLFRSFFATAVHRNFMINENGIPTNGVNGFLKHLITAVDTFQ----PTH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               +D  + T+RN+++ DYKANR + P  L+PQ  L + A +  G   I I+G+EADD 
Sbjct: 58  VVCCWDMGSKTYRNDLFQDYKANRSEPPLELIPQFDLAKEAARELGFLNIGIKGYEADDC 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T + +   E   +TI++ DKDL+QL++    +    K     +    E   ++ G+PP
Sbjct: 118 IGTLSALYSGE-AEITIVTGDKDLLQLLNHQVQVALLQKGIGNYKVYTDEIFREETGVPP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + ++ ++AL GD+ DN PG+ GIG KTA  L++EY N++ +L + + +  K ++  I + 
Sbjct: 177 KALIDIKALMGDTSDNYPGVKGIGEKTAYKLIREYQNIDRLLESLA-LLPKGQQTKIQQS 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEH 261
            +   LSR+L  +  +VP+   LE 
Sbjct: 236 LKELELSRQLAEIHCEVPLVCTLEE 260


>gi|296104468|ref|YP_003614614.1| exonuclease IX [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058927|gb|ADF63665.1| exonuclease IX [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 264

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P        +     L+   + S  +H   +F
Sbjct: 17  HLLIVDALNLIRRI-HAV-------QGTP------CKDTCLHALEQLIRHSEPTHVVAVF 62

Query: 66  DYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D  A    +R++  PDYKA R  +P+ L  ++P++R A +  G+P    QG EADD+ AT
Sbjct: 63  DDEARNSGWRHQRLPDYKAGRAPMPDDLHSEMPMIRSAFEKRGVPCWGAQGNEADDLAAT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL+SPT  + D  ++  +D   +  ++G+ PE++    
Sbjct: 123 LAVKVASAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAPFIASEFGVSPEQLPDYW 182

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PG+ GIG K+AA LL ++ NLE I      + +K  R+ +  + E A + 
Sbjct: 183 GLAGISSSKVPGVAGIGPKSAAQLLTDFQNLEGIYARLDEVPEKW-RKKLEAHKEMAFIC 241

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R +  L+TD+ +   L+ L LE
Sbjct: 242 RDVATLQTDLQLDGNLQQLRLE 263


>gi|289772665|ref|ZP_06532043.1| 5'-3' exonuclease [Streptomyces lividans TK24]
 gi|289702864|gb|EFD70293.1| 5'-3' exonuclease [Streptomyces lividans TK24]
          Length = 306

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 135/282 (47%), Gaps = 26/282 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+++ R E + +     
Sbjct: 3   GRLMLLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLDFIDRLVKDHRPEHLVACMDAD 62

Query: 65  FDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +      +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + + 
Sbjct: 63  W---RPHWRVELIPSYKAHRVAEERPAGPDAEEVPDTLSPQVPVIEAVLDALGIARVGVA 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEH 167
           G+EADD+I TYT  A      V I++ D+DL QLV       +   VK       +D   
Sbjct: 120 GYEADDVIGTYTARAT---GPVDIVTGDRDLYQLVDDARGVRVLYPVKGVGTLNLVDEAA 176

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ- 226
           + +K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  I       K  
Sbjct: 177 LREKYGVDGAGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIQAAVDDPKAR 236

Query: 227 --KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
               +R+ + E      ++ K+V +  DVP+      L    
Sbjct: 237 LTPTQRKRLTEAGPYLAVAPKVVRVAADVPLPDTGTALPHGP 278


>gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299]
 gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299]
          Length = 972

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 136/297 (45%), Gaps = 28/297 (9%)

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
           +T TGRL++  P+LQN P        IR+AF + P   LI ADY Q+ELR+LAH+A    
Sbjct: 675 NTETGRLSARRPSLQNQPALEKDRYGIRKAFSAEPGNILIVADYGQLELRLLAHMAGCVS 734

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIE---------------------------KVSPQMRR 799
           + + FE   D H   A  ++    E                            +    RR
Sbjct: 735 MREAFEAGGDFHSRTAMGMYKEIREAMEQGKCLLEYGDIDDDAGGEKPALVKDMFASERR 794

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NFSI YG +   LA    +   EA + +  ++   P + E+         + G V
Sbjct: 795 KAKVLNFSIAYGKTAHGLAKDFGVSTREAEETVDLWYSDRPEVREWQAVQHKKAAEKGKV 854

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T+ GR  +  E +S     R    RA+IN PIQG AADI   AMI +H+     +L  K
Sbjct: 855 NTLLGRHRNLPEASSSDEMRRGHALRASINTPIQGGAADIAMLAMIQIHRCPRLRELGFK 914

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL-RVPLKVNIKVSNNWQEE 975
           +L+QIHDE++ E PEE    A  ++   MEK      NL  V L V+   +  W E 
Sbjct: 915 LLMQIHDEVILEGPEEHRDEALALVKLHMEKPFNDHENLCDVELSVDGDYAKTWFEA 971



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 67/462 (14%), Positives = 134/462 (29%), Gaps = 92/462 (19%)

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
            + D D  N +     +    +K    +T  + +     S    L      ++++     
Sbjct: 83  ESADSDEENDDKPPKILRFNGDKISLHKTNGNGNGRRAASGVYELD-----VDADDKRAA 137

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG-------SASFKIITDTMDAF 402
                  K S      D    + +  + ++ ++ L             +       +D  
Sbjct: 138 SSATDDDKPSNLAGLIDEVAIVEDAAEARRVLKILMANTGDADRPVYHAVDTEVSHIDVS 197

Query: 403 HSKPIAIA----ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK-------------NTL 445
              P+        S     D      ++            STG               +L
Sbjct: 198 EQCPVGHGRVTCFSVYCGPDVDFGASQSGGNGSKNSRKNGSTGPAGGKPKTLLWVDTMSL 257

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR---S 501
             E     K +FE+    K+ HN  +D+ V+  +G+ + GF  D M M+ + +S R    
Sbjct: 258 GDEGWKIFKPYFESPDVKKVWHNYGFDRHVIENHGVKLAGFAADTMHMARLWNSNRKLEG 317

Query: 502 SHDIASI---------AQKWLSYTRKEIL----------KSRKSSI-----------PID 531
            + + ++         A +  S   +E++             K              PID
Sbjct: 318 GYSLEALSSDPKVMSDAGEMYSEAGEELIRSKRGMKKIFGKAKLKKDGTPGKTVILPPID 377

Query: 532 KISD-----SQVQEHAIENSNVILQLWLLLRPKLIV------------------EKLLHV 568
           +I           E++  ++     L   L  KL                      L   
Sbjct: 378 EIQTDPEQRETWIEYSALDAQATWFLRESLEAKLRGIDCEACPVLSKKPTFRRCSNLWDF 437

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------SGEKFN 622
           Y    +   +V++ ME  G+ +D+  L        ++    E+           + E  N
Sbjct: 438 YVHYLREFGEVLTDMESNGMYVDKAHLADAEKRALEDKKVAEDYFRAWATGKCPAAEHMN 497

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           + S  Q+  +LF         K    + +  A   ++    D
Sbjct: 498 VGSGIQVRQLLFAGAPNKRRDKPGVEKTREFAMVSKEWTEWD 539


>gi|227326524|ref|ZP_03830548.1| exonuclease IX [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 260

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 139/262 (53%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   I    + L +L+QNS+     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CITACQHALHQLIQNSQ----PTHAVAVF 49

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+++ PDYKA R  +PE L  +LP ++ A  A G+ +    G EADD+ AT
Sbjct: 50  DDEDRDTSWRHQLLPDYKAGRTPMPENLKQELPQIKAAFAAVGVASWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL++P   + D  ++  +D+  + +++G+ P+++    
Sbjct: 110 LAVKLSSAGHQATIVSTDKGYCQLLAPHIQIRDYFQKRWLDLPFIEQEFGVSPQQLTDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG K+AA LLQ+ G+LE +      + +K  R+ + ++ E A +S
Sbjct: 170 GLAGISSSKIPGVAGIGPKSAAQLLQQAGSLEALYQQLDTVPEKW-RKKLEQHKEMALIS 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  LRTD+ +   L+ L L 
Sbjct: 229 RQIATLRTDLTLNGNLQQLRLP 250


>gi|288556758|ref|YP_003428693.1| 5'-3' exonuclease [Bacillus pseudofirmus OF4]
 gi|288547918|gb|ADC51801.1| 5'-3' exonuclease [Bacillus pseudofirmus OF4]
          Length = 300

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 140/304 (46%), Gaps = 26/304 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP------LLSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M  +  L L+DG + + R ++AT        LS+  DGL  NA+  F   L  L+     
Sbjct: 1   MT-QPTLLLIDGFNLLSRGYFATSYGRSDDQLSKNSDGLYTNALRVFFQKLMNLIH---- 55

Query: 55  ESIASHFAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           E   +H AV +D     + R +  P YK  R  +P  L+ Q        +  GI  + + 
Sbjct: 56  EHDVTHAAVAWDVKREDSVRRQYAPTYKETRNDLPAPLIEQYETCTRILEDMGILQVTVP 115

Query: 114 GFEADDIIATYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIK 170
            +EADD I   +            I S D+DL+QL+   T      K+ +      H  +
Sbjct: 116 PYEADDAIGALSCQWSNRNDGRCLIYSNDRDLLQLLDERTTQIIASKKGEILYTHTHFEE 175

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS----RIKQ 226
           ++GI P + + ++AL GD  DNIPG PG+G K+A  L+Q+YG++E +             
Sbjct: 176 EYGITPTQWIDVKALLGDKSDNIPGCPGVGEKSALPLIQQYGSVEGVYNQLETGEFDPAY 235

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE----DCNGPRLISFLKALEFT 282
           K+ ++ ++   E+A LS+KL  +  ++P    LE         + +  R+ S  +++E  
Sbjct: 236 KRYQKKLIAGRESAILSKKLATIICEIP---DLEDTDFTTYTFEMDHERVESVFQSVELK 292

Query: 283 KLIN 286
             ++
Sbjct: 293 IKLH 296


>gi|239940070|ref|ZP_04692007.1| putative 5'-3' exonuclease [Streptomyces roseosporus NRRL 15998]
 gi|239986559|ref|ZP_04707223.1| putative 5'-3' exonuclease [Streptomyces roseosporus NRRL 11379]
 gi|291443499|ref|ZP_06582889.1| 5'-3' exonuclease [Streptomyces roseosporus NRRL 15998]
 gi|291346446|gb|EFE73350.1| 5'-3' exonuclease [Streptomyces roseosporus NRRL 15998]
          Length = 302

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 146/304 (48%), Gaps = 27/304 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+ + R + + + +   +  
Sbjct: 1   MLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIGRLVHDHRPDELVACWDNDW-- 58

Query: 68  PAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               +R ++ P YKA+R             +IP+ L PQ+P++     A GI  + +  +
Sbjct: 59  -RPQWRVDLIPTYKAHRVAEETPAGQTDEEEIPDTLSPQVPIIEDVLAALGIARVGVTPY 117

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVI 169
           EADDII T T  A+     V I++ D+DL QLV       +   +K     +  D   + 
Sbjct: 118 EADDIIGTLTARAK---GPVDIVTGDRDLYQLVDDARQVRVLYPLKGVGTLQVTDEAWLR 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-- 227
           +K+G+     V L  L GD  D +PG+PGIG KTAA LL  YG+L+ I+      K K  
Sbjct: 175 EKYGVDGAGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDAYGDLDGIMAAVDDPKAKLT 234

Query: 228 -KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             +R+ + E      ++ K+V +  DVP+      L  E  +   L +  +    +  I 
Sbjct: 235 PSQRKRLDESRAYVAVAPKVVRVAGDVPLPDFDPALPREPRDPAALEALAEQWGLSGAIQ 294

Query: 287 RVAT 290
           R+ T
Sbjct: 295 RLLT 298


>gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 912

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 100/338 (29%), Positives = 153/338 (45%), Gaps = 31/338 (9%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +  + +   +  + S +   L  +++  +T RVHT  ++ +T TGRL++  P+LQN P  
Sbjct: 575 VDALNDVAAIDTLLSNFIIPLQSDNLRGKTGRVHTALNI-NTETGRLSARRPSLQNQPAL 633

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                 IR+AF   P   L+ ADY Q+ELR+LAH+A    + + FE   D H   A  ++
Sbjct: 634 EKDRYGIRKAFTCRPGNILVVADYGQLELRLLAHMAGCASMREAFEAGGDFHSRTAMGMY 693

Query: 787 GVNIEKVSP----------------------------QMRRHAKTINFSIIYGISPFRLA 818
               E +                                RR AK +NFSI YG +   LA
Sbjct: 694 KEIREAMDEGKCLLEYGSEGYDEDEANRPALVKDMFASERRKAKVLNFSIAYGKTAHGLA 753

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
               +   EA D +  ++   P +  + E       + G V T+ GR  +  E +S    
Sbjct: 754 KDFGVSTKEAEDTVNLWYSDRPEVRAWQEVQHANATKLGKVSTLLGRHRNLPEASSRDEM 813

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            R    RA+IN PIQG AADI   AM+ +H+     ++  ++L+QIHDE++ E PEE   
Sbjct: 814 RRQHALRASINTPIQGGAADIAMLAMMQIHRCPRLKEIGYELLMQIHDEVILEGPEEHKD 873

Query: 939 TASQIIVHSMEKACLPKINL-RVPLKVNIKVSNNWQEE 975
            A  ++   ME       NL  V L V+   +  W E 
Sbjct: 874 EALALVKRHMENPFNDHENLCDVDLNVDGNYAKTWFEA 911



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 96/284 (33%), Gaps = 64/284 (22%)

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGF-EDIMLMSYVLDSGR-- 500
           L  E  +  K +FE+    K+ HN  +D+ V+  + GI + GF  D M M+ + +S R  
Sbjct: 195 LGDEGWAIFKPYFESPDAKKVWHNYSFDRHVIENHGGIKLAGFAADTMHMARLWNSNRKL 254

Query: 501 -SSHDIASI---------AQKWLSYTRKEIL--KSRKSSI-------------------P 529
              + + ++         A +  S   +E++  K     I                   P
Sbjct: 255 EGGYSLEALTSDPKVMSEAGEMFSEAGEELIRSKRGMKKIFGKPKIKKDGTPGKTIELPP 314

Query: 530 IDKISD-----SQVQEHAIENSNVILQLWLLLRPKL------------------IVEKLL 566
           ID+I +         E++  ++     L   L  KL                      L 
Sbjct: 315 IDQIQNDPEQRETWIEYSALDAQATWFLRESLEAKLRGISCDACPRLSDKPTFHECANLW 374

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------SGEK 620
             Y    +   +V++ ME  G+ +D+  L+    +   +    E+           + E 
Sbjct: 375 EFYTTYLREFGEVLTDMESAGMFVDKKHLEGAEKQALADKKVAEDYFRRWAMKMCPAAEH 434

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            N+ S  Q+  +LF   +     K    + +  A    +    D
Sbjct: 435 MNVGSGIQVRQLLFAGARNKRPDKPGVEKEREFAMVSPEWTAWD 478


>gi|302527225|ref|ZP_07279567.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302436120|gb|EFL07936.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 316

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 31/318 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M+    L L+D +S  +R+FYA P      DG PVNA+ GF + + ++L + R   + + 
Sbjct: 1   MRVTGPLALLDSASLYFRSFYALPDSMTAPDGTPVNAVRGFTDTIARILTDRRPSRLVAC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPA 109
               +      FR ++ P YKA+R            ++P+ L PQ+P++    +AFG   
Sbjct: 61  LDADW---RPKFRTDLLPSYKAHRVAVPGDGGADVEEVPDTLTPQVPIILEVLEAFGFAV 117

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEK 162
            E  G+EADD+I        ++   V +I+ D+DL QLV                 K E 
Sbjct: 118 AEADGYEADDVIGALATR--EKDAPVEVITGDRDLFQLVREEPTPTSVVYVGKGWAKAEV 175

Query: 163 IDIEHVIKKWGIPPE----KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           +    + +K+G+P E        + AL GD  D +PG+ GIG KTAA L+ E+G+LE ++
Sbjct: 176 LGQREIAEKYGVPAEHAGPAYADMAALRGDPSDGLPGVAGIGEKTAAKLITEFGSLEELV 235

Query: 219 INA---SRIKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLIS 274
             A         K R  + + A+   ++  +V +  D P +    + +     +  R+  
Sbjct: 236 AAASAGDSRVPLKTRLRLSDAADYLAVAPTVVRVAVDAPVVQSGPDAVPSAPADPDRVAE 295

Query: 275 FLKALEFTKLINRVATTY 292
             +     + + R+    
Sbjct: 296 LAERWNLGRSVERLLAAL 313


>gi|205373733|ref|ZP_03226536.1| 5'-3' exonuclease, putative [Bacillus coahuilensis m4-4]
          Length = 247

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 81/237 (34%), Positives = 128/237 (54%), Gaps = 14/237 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCN-MLWKLLQNSRKESIA 58
           K+ H+ L+DG + ++R+F++T           G+P N + GF    L  +     KE   
Sbjct: 2   KDKHVLLIDGMALLFRSFFSTSVTGQFMINSSGIPTNGVQGFLKHTLLSI-----KEFNP 56

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H AV +D  +VTFRN+++  YK+NR   P  LLPQ    + + +A G+  I + G+EAD
Sbjct: 57  THVAVCWDMGSVTFRNDMFDGYKSNRDAPPVELLPQFDFAKESAEALGLSNIGVVGYEAD 116

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174
           D I T      KE   V+I+S D DL+QLV     ++   K          +  I++ GI
Sbjct: 117 DCIGTLAKGYSKE-VKVSILSGDHDLLQLVDEHINVHILKKGYGQYSTYSKKAFIEEKGI 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            P + + ++A  GD+ D  PG+ GIG KTA  L+QEYG++E +L N   +   ++R+
Sbjct: 176 TPSQFIDVKAFMGDTSDGYPGVRGIGEKTATKLIQEYGSIEGVLNNLHLLTNAQQRK 232


>gi|226327076|ref|ZP_03802594.1| hypothetical protein PROPEN_00937 [Proteus penneri ATCC 35198]
 gi|225204294|gb|EEG86648.1| hypothetical protein PROPEN_00937 [Proteus penneri ATCC 35198]
          Length = 249

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 132/262 (50%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A+    +      VN + G               +  +H   +F
Sbjct: 3   HLLIIDALNLIRRIHAASGSSCQTVCEQSVNQLLG--------------HTQPTHAVAVF 48

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+++ PDYKA R  +P+ L  QLP ++      GI +    G EADD+ AT
Sbjct: 49  DEDDREGSWRHQLLPDYKAGRTPMPDDLRQQLPEIKAMLLNLGIQSWHSGGDEADDVAAT 108

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   GF VTIISTDK   QL+SP+  + D  +   +D+E +  ++G+ P ++    
Sbjct: 109 LATKVASAGFRVTIISTDKGYCQLLSPSIRIRDYFQRRWLDLEFIRSEFGVEPSQLTDYW 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   + G+PGIG K+A  LLQ Y +LE++  +   +  K  +  +  + E+A +S
Sbjct: 169 GLTGVSSSKVVGVPGIGPKSATELLQAYPDLESLYQHIDDVPTKW-QNKLTTHKESAFIS 227

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           RK+  LRTD+ +   L+ L L+
Sbjct: 228 RKIATLRTDIQLNGNLQQLRLK 249


>gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12]
 gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12]
          Length = 595

 Score =  238 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 111/628 (17%), Positives = 241/628 (38%), Gaps = 82/628 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           +   +D+ ++   +       +    T  +D +       + +   +      + E   +
Sbjct: 18  VERDEDLAEFRDFIRAHKHCLAVDTETTGLDIY-------SDTFRCRLVQFGTQSEAWVL 70

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG------ISM 483
            + +           + + ++  L +         +  N  YD  VL + G      +  
Sbjct: 71  PVELGGG--------IPENVIEALYEV-----DKLVMQNASYDLQVLDQIGYAAMEDLWP 117

Query: 484 RGFEDIMLMSYVLDS-----GRSSHDIASIAQKWLSYTRKEILKSRKSSIPID------- 531
           +   D  +++ ++D      G   H +  +  +++   + E +K   + +  +       
Sbjct: 118 K-VLDTQILAKLVDPRPFEAGGFGHSLEELIAEFIDKEQAENVKGLMTKLAKEHKTTKAK 176

Query: 532 -----KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                 +   +   +A  ++    ++   L P  +V  +       +  + ++ S ++  
Sbjct: 177 IWSTIDLFHPEYLTYAGMDTIFTARICSKLAP--LVPDVSRSLVPYEHKLSEICSYIDRK 234

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G  +D +  + +S +        +   +   G + N++S  Q  D L  ++      +T+
Sbjct: 235 GFLLDVEYAQALSDKWLYEKSVWDAIAFTEYGLE-NVNSTDQCADAL-EEMGVKIKGRTE 292

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
           +G+ +     L+ ++   N +   I E ++L K   T+     + +     R HTF +  
Sbjct: 293 SGKRQVNDDLLQSLSDDGNELAAIIQEAKKLGKWNKTWVAKFLS-VRDSEDRCHTFVNPL 351

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
              T R++      Q +P        +RR F++ P + + S DY   ELR+LA ++    
Sbjct: 352 QARTSRMSITGIPAQTLPASD---WIVRRCFVADPGQVMASVDYQTQELRVLAALSGDQT 408

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
           + + F+   D+H+M A           S  +R+  K  NF  +YG     LA Q  I   
Sbjct: 409 MIEAFKTGADLHQMTA---------DASQVVRKVGKMANFLTVYGGGAKTLAEQAHIDFP 459

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
            A   +  +   +PG+  Y +K      +NGY+    GRR+  D          +    +
Sbjct: 460 TAKRVLDGFAKTYPGVARYSKKLAMEAGRNGYIVNAMGRRLPVD----------SSRTYS 509

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N  IQ S+ D+T RA+I +H    +      + L IHDE+V  +P  +    ++ I  
Sbjct: 510 ALNYMIQSSSRDVTCRALIRLH----EAGFTPYLRLPIHDEVVASLPAGQAEWGAKEIAR 565

Query: 947 SMEKACLPKINLRVPLKVNIKVSN-NWQ 973
            M++   P +     +  + +V   +W 
Sbjct: 566 LMQEEMGPVL-----IGTDPEVGKRSWG 588


>gi|253798851|ref|YP_003031852.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 1435]
 gi|289554126|ref|ZP_06443336.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 605]
 gi|253320354|gb|ACT24957.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 1435]
 gi|289438758|gb|EFD21251.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 605]
 gi|328458610|gb|AEB04033.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 4207]
          Length = 393

 Score =  238 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 77  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 136

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 137 DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 193

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 194 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 251

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 252 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 311

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 312 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAEL 371

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 372 ATRFGVESSIARLQKALDT 390


>gi|148823304|ref|YP_001288058.1| 5'-3' exonuclease [Mycobacterium tuberculosis F11]
 gi|289745366|ref|ZP_06504744.1| 5'-3' exonuclease [Mycobacterium tuberculosis 02_1987]
 gi|289758207|ref|ZP_06517585.1| 5'-3' exonuclease [Mycobacterium tuberculosis T85]
 gi|289762252|ref|ZP_06521630.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|308373325|ref|ZP_07431861.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu005]
 gi|308375774|ref|ZP_07445066.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu007]
 gi|308377913|ref|ZP_07480882.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu009]
 gi|148721831|gb|ABR06456.1| hypothetical 5'-3' exonuclease [Mycobacterium tuberculosis F11]
 gi|289685894|gb|EFD53382.1| 5'-3' exonuclease [Mycobacterium tuberculosis 02_1987]
 gi|289709758|gb|EFD73774.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713771|gb|EFD77783.1| 5'-3' exonuclease [Mycobacterium tuberculosis T85]
 gi|308338089|gb|EFP26940.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu005]
 gi|308345268|gb|EFP34119.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu007]
 gi|308354199|gb|EFP43050.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu009]
 gi|326903704|gb|EGE50637.1| 5-3 exonuclease [Mycobacterium tuberculosis W-148]
          Length = 393

 Score =  238 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 77  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 136

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 137 DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 193

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 194 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 251

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 252 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 311

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 312 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAEL 371

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 372 ATRFGVESSIARLQKALDT 390


>gi|238796595|ref|ZP_04640102.1| Uncharacterized exonuclease xni [Yersinia mollaretii ATCC 43969]
 gi|238719573|gb|EEQ11382.1| Uncharacterized exonuclease xni [Yersinia mollaretii ATCC 43969]
          Length = 252

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 139/262 (53%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   I    + L +L+Q+S+     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CIKACQHALQQLIQHSQ----PTHAVAVF 49

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++  P+YKA R  +P+ L  ++P +R A  + GI      G EADD+ AT
Sbjct: 50  DEDDRSESWRHQCLPEYKAGRSPMPDNLQQEMPFIREAFNSLGIACWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 110 LATKIGDAGHQVTIVSTDKGYCQLLAPHVQIRDYFQKRWLDMPFVKQEFGVLPHQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG KTAALLLQ+   LE +      + +K  R+ + ++ E A + 
Sbjct: 170 GLAGISSSKIPGVAGIGAKTAALLLQQANTLEALYQELESVPEKW-RKKLQQHQEMALIC 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           +++  L+TD+P++  L+ L L+
Sbjct: 229 KQIATLKTDLPLSGNLQQLRLQ 250


>gi|238760465|ref|ZP_04621602.1| Uncharacterized exonuclease xni [Yersinia aldovae ATCC 35236]
 gi|238701307|gb|EEP93887.1| Uncharacterized exonuclease xni [Yersinia aldovae ATCC 35236]
          Length = 251

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 133/264 (50%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G    N     LQ     S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVNACQHALQQLISHSQPTHAVA 47

Query: 64  IFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++P +R A  A G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPHIREAFNALGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLVAKISGAGHQATIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAALLLQ+  +LE +  +   I +K  R+ + ++ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTAALLLQQVSSLEELYQSLESIPEKW-RKKLQQHQEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           + +++  L+TD+P++  L+ L L+
Sbjct: 227 ICKQIATLKTDLPLSGNLQQLRLK 250


>gi|289447711|ref|ZP_06437455.1| 5'-3' exonuclease [Mycobacterium tuberculosis CPHL_A]
 gi|289420669|gb|EFD17870.1| 5'-3' exonuclease [Mycobacterium tuberculosis CPHL_A]
 gi|323719389|gb|EGB28528.1| 5'-3' exonuclease [Mycobacterium tuberculosis CDC1551A]
          Length = 374

 Score =  237 bits (605), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 58  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 117

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 118 DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 174

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 175 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 232

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 233 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 292

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 293 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAEL 352

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 353 ATRFGVESSIARLQKALDT 371


>gi|328873005|gb|EGG21372.1| DNA polymerase theta short isoform [Dictyostelium fasciculatum]
          Length = 989

 Score =  237 bits (605), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 133/561 (23%), Positives = 230/561 (40%), Gaps = 90/561 (16%)

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHD-IASIAQK 511
           K   EN +  K  +N +    +L    I ++ G  D  + +++LD  +     + ++ + 
Sbjct: 425 KIIMENPNSYKYLYNCRAQIKMLMSMDIHVKKGIMDPRVGAWLLDPDKYKDTTLDTLVR- 483

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
                  E  + +K S  +D+++      H    S V+++   L         L  ++  
Sbjct: 484 -------EFSQDKKLSTNVDELNHYDRSFHHCYRSFVLMK--QLFTRFHFNRDLYKIFNE 534

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLG 630
           ++ P++ ++++ME  GI  D    +    E+ + L  +E     +    KF++SS + + 
Sbjct: 535 MEMPLLVILAKMEYNGIGFDDATCQNTKYEVLQKLQYIEVKARLMVPDLKFSMSSKEDMS 594

Query: 631 DILFTKLKFPSGAKTKTGQ-----WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           +IL+  L+     K   G+       T A  LE +        K ++EWR+LS     Y 
Sbjct: 595 NILYNVLRVVDIPKANRGKIVKRHHSTKAAILEAVPEEKAAFPKMLIEWRKLSHHLLNYV 654

Query: 686 DSLPN--HINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA----- 736
             L    + N      R++T     +  TGRLA   PNLQ+I       +          
Sbjct: 655 HVLFKFGYYNPDYEMMRIYTTIMQTNVPTGRLAMTYPNLQSIANAFTFRESPISFSDVST 714

Query: 737 -------------FISPPTKKLISADYS-------------------------------- 751
                           P     ++ DYS                                
Sbjct: 715 NNVSKASSSASQHCSPPYDHHNVTVDYSPSPNESKSIGSLSTLELKEDNCRLITVRIRDS 774

Query: 752 ---------------QIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEI-FGVNIEKVS 794
                          QIELRILAH+++   L     N   D  + +  ++  G  IE V+
Sbjct: 775 FIPRKGYLFLSADYSQIELRILAHLSEDKLLLDGLNNPDFDFFKTMFVQMNKGTRIEDVT 834

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            + R  AK + + I+YG+  + LA +L     EA    ++ ++ +  + +YI+  K    
Sbjct: 835 AEERDIAKELCYGILYGMGTWSLANKLDRDEKEARILKEKLYNTYRDLIKYIDSVKKRYH 894

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           Q GYVET + R+   D  N+         +R A+N+  QG+AADI ++AMIS+ +  E+ 
Sbjct: 895 QVGYVETFYHRKRFLDN-NTRDKVEIEKEKRKAVNSIPQGTAADIIKQAMISIDRIFEEQ 953

Query: 915 KLATKMLLQIHDELVFEVPEE 935
           K    M+LQIHDEL+FEV E+
Sbjct: 954 KTPALMVLQIHDELLFEVRED 974


>gi|332160581|ref|YP_004297158.1| exonuclease IX [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318606941|emb|CBY28439.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664811|gb|ADZ41455.1| exonuclease IX [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 251

 Score =  237 bits (605), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 139/261 (53%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A            VNA     + L +L+ +S+     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAVQDSPS------VNACQ---HALQQLISHSQ----PTHAVAVF 49

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++  PDYKA R  +P+ L  ++PL+R A  + G+      G EADD+ AT
Sbjct: 50  DEDDRSDSWRHQSLPDYKAGRSPMPDNLQQEMPLIREAFNSLGVNCWSSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 110 LAIKIGEAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG KTAALLLQ+  +LE +      + +K  R+ + ++ E A + 
Sbjct: 170 GLAGISSSKIPGVAGIGAKTAALLLQQASSLEELYQELDSVPEKW-RKKLQQHQEMAFIC 228

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+ D+P++  L+ L L
Sbjct: 229 KQIATLKADLPLSGNLQQLRL 249


>gi|15609227|ref|NP_216606.1| 5'-3' exonuclease [Mycobacterium tuberculosis H37Rv]
 gi|148661905|ref|YP_001283428.1| putative 5'-3' exonuclease [Mycobacterium tuberculosis H37Ra]
 gi|1370257|emb|CAA98202.1| Probable 5'-3' exonuclease [Mycobacterium tuberculosis H37Rv]
 gi|148506057|gb|ABQ73866.1| putative 5'-3' exonuclease [Mycobacterium tuberculosis H37Ra]
          Length = 393

 Score =  237 bits (605), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 142/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 77  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 136

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 137 DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 193

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 194 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 251

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 252 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 311

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P +   L   +  R    
Sbjct: 312 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAEL 371

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 372 ATRFGVESSIARLQKALDT 390


>gi|254819633|ref|ZP_05224634.1| hypothetical protein MintA_06909 [Mycobacterium intracellulare ATCC
           13950]
          Length = 318

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 141/318 (44%), Gaps = 33/318 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  +R+++  P      DG PVNA+ GF + +  ++   R   +     + 
Sbjct: 3   GPLVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFIDSVAFVITQQRPSRLVVCLDLD 62

Query: 65  FDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGIP    
Sbjct: 63  W---RPQFRVDLVPSYKAHRVAEPEPPGEPDIEEVPDDLTPQIDMIAELLDAFGIPTAGA 119

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDI 165
           +GFEADD++ T    A +    V ++S D+DLMQ+VS                K      
Sbjct: 120 EGFEADDVLGTLA--ARERDDPVVVVSGDRDLMQVVSDDPVPVRVLYLGRGLSKATLFGP 177

Query: 166 EHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V + +G+P E+       L  L GD  D +PG+PG+G KTAA LL ++G+LE IL  A
Sbjct: 178 AEVAEHYGVPVERAGPAYAELALLRGDPSDGLPGVPGVGEKTAASLLAQHGSLEQILAAA 237

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITIPL--EHLILEDCNGPRLISFL 276
              K    K  R  +L   +    +  +V + TD  +T     + L L   +  R     
Sbjct: 238 HDPKSKMPKGLRAKLLGALDYIEAAGDVVRVATDAHVTFSTAGDELPLVAADPQRTAKLA 297

Query: 277 KALEFTKLINRVATTYDC 294
             L     I R+    D 
Sbjct: 298 TELGVGSSIARLQKALDA 315


>gi|115451687|ref|NP_001049444.1| Os03g0227300 [Oryza sativa Japonica Group]
 gi|108706959|gb|ABF94754.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing
           protein, expressed [Oryza sativa Japonica Group]
 gi|113547915|dbj|BAF11358.1| Os03g0227300 [Oryza sativa Japonica Group]
 gi|215704203|dbj|BAG93043.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222624502|gb|EEE58634.1| hypothetical protein OsJ_10000 [Oryza sativa Japonica Group]
          Length = 421

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 92/313 (29%), Positives = 160/313 (51%), Gaps = 39/313 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA------IAGFCNMLWKLLQNSRKES 56
            ++ + LVDG+S +YR++Y    L++   G   +A      +      L  +L     E 
Sbjct: 89  SKSRIMLVDGTSVMYRSYYKI--LAQLQHGQLEHADGNGDWVLTIFKALSLVLDML--EF 144

Query: 57  IASHFAVIFDY-------------------PAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
           I SH AV+FD+                     +TFR+ +YP YK+NR   P+ ++  +  
Sbjct: 145 IPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPSYKSNRIPTPDTIVQGMQY 204

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L   
Sbjct: 205 LKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRIVSPDKDFFQILSPSLRLLRI 264

Query: 158 V----KEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                      +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ ++G
Sbjct: 265 APRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITKFG 324

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDC-- 267
           +LEN+L +   +++++ ++ ++  +E A L + L  LR+D+P   +      L+ +    
Sbjct: 325 SLENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSDLPSYMVPFKTSDLVFQKPKD 384

Query: 268 NGPRLISFLKALE 280
           +G + I  L+ALE
Sbjct: 385 DGAKFIKLLRALE 397


>gi|307129810|ref|YP_003881826.1| Ssb-binding protein [Dickeya dadantii 3937]
 gi|306527339|gb|ADM97269.1| Ssb-binding protein [Dickeya dadantii 3937]
          Length = 253

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R  A   +P L+                 L +L+Q+S+     +H   
Sbjct: 4   HLLIVDALNLIRRIHAVQGSPCLTACQH------------ALGQLIQHSQ----PTHAVA 47

Query: 64  IFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R+++ P+YKA R  +PE L  +LP +R A  A G+ +    G EADD+ 
Sbjct: 48  VFDDEQRDQSWRHQLLPEYKAGRAPMPENLSQELPQIRDAFLALGVDSWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT       +G   TI+STDK   QL++PT  + D  ++  +D+  + +++G+ PE++  
Sbjct: 108 ATLACKVAAQGHQATIVSTDKGYCQLLAPTIRIRDYFQKRWLDVPFIQQEFGVQPEQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAA LLQ+ G+LE +     +I +K RR  +    + A 
Sbjct: 168 YWGLAGISSSKIPGVSGIGPKTAAQLLQQAGSLEALYQQLEQIPEKWRR-KLESQQDMAY 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
            SR++  LRTD+ +   L+ L L 
Sbjct: 227 RSREVATLRTDLVLNGNLQQLRLP 250


>gi|260599148|ref|YP_003211719.1| exonuclease xni [Cronobacter turicensis z3032]
 gi|260218325|emb|CBA33325.1| Uncharacterized exonuclease xni [Cronobacter turicensis z3032]
          Length = 251

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 128/263 (48%), Gaps = 17/263 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P        +     L+     S  +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGTP------CVDTCLHALEQLLGNSQPTHAVAVF 49

Query: 66  D--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    A  +R+++ PDYKA RP +P+ L  ++P +R A    G+P   ++G EADD+ AT
Sbjct: 50  DDEARAQGWRHQLLPDYKAGRPPMPDDLHQEMPALREAFTRRGVPCWHVEGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL+ P   + D  ++  +D   +  ++G+ P ++    
Sbjct: 110 LAVKVATAGHEATIVSTDKGYCQLLRPEIRIRDYFQKRWLDAPFIENEFGVAPGQLADFW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG K+A  L+ ++G LE +      + +K  R+ +  + E+A + 
Sbjct: 170 GLAGISSSKIPGVAGIGPKSATQLINDFGTLEALYERLDEVPEKW-RKKLEAHRESAFIC 228

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           R +  L++D+ +   L+ L L+ 
Sbjct: 229 RDVATLKSDLQLDGNLQQLRLKG 251


>gi|21220118|ref|NP_625897.1| 5'-3' exonuclease [Streptomyces coelicolor A3(2)]
 gi|17367064|sp|Q9RJ79|EX53_STRCO RecName: Full=5'-3' exonuclease
 gi|6119664|emb|CAB59475.1| putative 5'-3' exonuclease [Streptomyces coelicolor A3(2)]
          Length = 301

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 142/305 (46%), Gaps = 26/305 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+++ R E + +     +  
Sbjct: 1   MLLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLDFIDRLVKDHRPEHLVACMDADW-- 58

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + + G+E
Sbjct: 59  -RPHWRVELIPSYKAHRVAEERPAGPDAEEVPDTLSPQVPVIEAVLDALGIARVGVAGYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIK 170
           ADD+I TYT  A      V I++ D+DL QLV       +   VK       +D   + +
Sbjct: 118 ADDVIGTYTARAT---GPVDIVTGDRDLYQLVDDARGVRVLYPVKGVGTLNLVDEAALRE 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---K 227
           K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  I       K     
Sbjct: 175 KYGVDGAGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIQAAVDDPKARLTP 234

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +R+ + E      ++ K+V +  DVP+      L     +   L +          + R
Sbjct: 235 TQRKRLTEAGPYLAVAPKVVRVAADVPLPDTGTALPHGPRDAAALEALAARWGLGGSLQR 294

Query: 288 VATTY 292
           + TT 
Sbjct: 295 LLTTL 299


>gi|242036411|ref|XP_002465600.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
 gi|241919454|gb|EER92598.1| hypothetical protein SORBIDRAFT_01g041870 [Sorghum bicolor]
          Length = 421

 Score =  237 bits (604), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 169/348 (48%), Gaps = 56/348 (16%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA---------IAGFCNMLWKLLQNSR 53
            ++ + LVDG+S +YR++Y    L++   G   +A         I    ++L  +L    
Sbjct: 90  SKSRIMLVDGTSVMYRSYYKI--LAQLQHGQLEHADGNGDWVLTIFKALSLLLDML---- 143

Query: 54  KESIASHFAVIFDY-------------------PAVTFRNEIYPDYKANRPKIPEMLLPQ 94
            E I SH AV+FD+                     +TFR+ +YP YK+NR   P+ ++  
Sbjct: 144 -EFIPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPAYKSNRTPTPDTVVQG 202

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           +  ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L
Sbjct: 203 MQYLKASIKAMSIKVIEVPGVEADDVIGTLAVNSVSAGYKVRIVSPDKDFFQILSPSLRL 262

Query: 155 YDTV----KEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                         +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ 
Sbjct: 263 LRIAPRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLIT 322

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILED 266
           ++G+LEN+L +   ++  + ++ ++ ++E A L + L  LR+D+P   +      L  + 
Sbjct: 323 KFGSLENLLKSVDEVEDDRIKQALISHSEQAILCKSLATLRSDLPSYMVPFKTADLAYKK 382

Query: 267 C--NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENK 312
              +G + I  L+ALE              + ++ +P++       NK
Sbjct: 383 PQDDGVKFIKLLRALEAY-----------AEGSSADPIIRRATYLWNK 419


>gi|108706960|gb|ABF94755.1| 5'-3' exonuclease, N-terminal resolvase-like domain containing
           protein, expressed [Oryza sativa Japonica Group]
          Length = 416

 Score =  237 bits (604), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 92/313 (29%), Positives = 160/313 (51%), Gaps = 39/313 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA------IAGFCNMLWKLLQNSRKES 56
            ++ + LVDG+S +YR++Y    L++   G   +A      +      L  +L     E 
Sbjct: 84  SKSRIMLVDGTSVMYRSYYKI--LAQLQHGQLEHADGNGDWVLTIFKALSLVLDML--EF 139

Query: 57  IASHFAVIFDY-------------------PAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
           I SH AV+FD+                     +TFR+ +YP YK+NR   P+ ++  +  
Sbjct: 140 IPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPSYKSNRIPTPDTIVQGMQY 199

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L   
Sbjct: 200 LKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRIVSPDKDFFQILSPSLRLLRI 259

Query: 158 V----KEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                      +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ ++G
Sbjct: 260 APRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITKFG 319

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDC-- 267
           +LEN+L +   +++++ ++ ++  +E A L + L  LR+D+P   +      L+ +    
Sbjct: 320 SLENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSDLPSYMVPFKTSDLVFQKPKD 379

Query: 268 NGPRLISFLKALE 280
           +G + I  L+ALE
Sbjct: 380 DGAKFIKLLRALE 392


>gi|197286144|ref|YP_002152016.1| exodeoxyribonuclease IX [Proteus mirabilis HI4320]
 gi|227357264|ref|ZP_03841621.1| exodeoxyribonuclease IX [Proteus mirabilis ATCC 29906]
 gi|194683631|emb|CAR44545.1| exodeoxyribonuclease IX [Proteus mirabilis HI4320]
 gi|227162527|gb|EEI47516.1| exodeoxyribonuclease IX [Proteus mirabilis ATCC 29906]
          Length = 249

 Score =  237 bits (604), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 136/262 (51%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A+            + +    + + +LL ++R     +H   +F
Sbjct: 3   HLLIIDALNLIRRIHAASGS----------SCLTVCEHSVNQLLNHTR----PTHAVAVF 48

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+++ P+YKA R  +P  L  QLP ++      GI +    G EADD+ AT
Sbjct: 49  DEDDRENSWRHQLLPEYKAGRSPMPADLHQQLPEIKAMLLNLGIKSWHSGGDEADDVAAT 108

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTIISTDK   QL+SP   + D  ++  +D+E + +++G+ P ++    
Sbjct: 109 LATKVAQAGHNVTIISTDKGYCQLLSPAIRIRDYFQKRWLDLEFINQEFGVKPTQLTDYW 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   + G+PGIG K+A  LLQ Y NLE++  +   +  KK +  + +  E A +S
Sbjct: 169 GLTGVSSSKVSGVPGIGPKSATELLQLYPNLESLYQHIDEV-PKKWQTKLSDNKEVAFIS 227

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  LRTD+ +   L+ L L+
Sbjct: 228 RQITTLRTDIQLNGNLQQLRLK 249


>gi|311068712|ref|YP_003973635.1| 5'3'-exonuclease [Bacillus atrophaeus 1942]
 gi|310869229|gb|ADP32704.1| 5'3'-exonuclease [Bacillus atrophaeus 1942]
          Length = 296

 Score =  237 bits (604), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 85/265 (32%), Positives = 141/265 (53%), Gaps = 13/265 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L LVDG + ++R+F+AT +         G+P N + GF   L   ++  +     +H
Sbjct: 2   KKKLLLVDGMALLFRSFFATAVHRNFMINDSGVPTNGVNGFLKHLITAMERFQ----PTH 57

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
               +D  + T+RN+++ DYKANR + P  L+PQ  L + A    GI  I ++G+EADD 
Sbjct: 58  VVCCWDMGSKTYRNDLFQDYKANRSQPPIELVPQFDLAKEAAAELGILNIGLKGYEADDC 117

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176
           I T   +  +E   +TI++ DKDL+QL+S    +    K     +    +   ++ G+ P
Sbjct: 118 IGTLAALFTEE-AEITIVTGDKDLLQLLSDGINVALLQKGIGNYKIYTKDLFYEETGVLP 176

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           + ++ ++AL GDS DN PG+ GIG KTA  L+ EY  +E +L N + +  K ++  I   
Sbjct: 177 KALIDVKALMGDSSDNYPGVKGIGEKTAYKLIGEYETIERLLENIA-LLPKGQQGKIQAG 235

Query: 237 AETARLSRKLVMLRTDVPITIPLEH 261
            +   +SR+L  +   VP+T  L  
Sbjct: 236 LKELGISRQLAEINCAVPLTCALTD 260


>gi|308379118|ref|ZP_07485107.2| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu010]
 gi|308358102|gb|EFP46953.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu010]
          Length = 368

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 142/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 52  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 111

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 112 DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 168

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 169 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 226

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 227 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 286

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P +   L   +  R    
Sbjct: 287 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAEL 346

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 347 ATRFGVESSIARLQKALDT 365


>gi|289443596|ref|ZP_06433340.1| 5'-3' exonuclease [Mycobacterium tuberculosis T46]
 gi|289570203|ref|ZP_06450430.1| 5-3 exonuclease [Mycobacterium tuberculosis T17]
 gi|289754200|ref|ZP_06513578.1| 5'-3' exonuclease [Mycobacterium tuberculosis EAS054]
 gi|289416515|gb|EFD13755.1| 5'-3' exonuclease [Mycobacterium tuberculosis T46]
 gi|289543957|gb|EFD47605.1| 5-3 exonuclease [Mycobacterium tuberculosis T17]
 gi|289694787|gb|EFD62216.1| 5'-3' exonuclease [Mycobacterium tuberculosis EAS054]
          Length = 374

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 58  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 117

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 118 DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 174

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 175 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 232

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 233 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 292

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 293 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTADL 352

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 353 ATRFGVESSIARLQKALDT 371


>gi|289574771|ref|ZP_06454998.1| 5'-3' exonuclease [Mycobacterium tuberculosis K85]
 gi|289539202|gb|EFD43780.1| 5'-3' exonuclease [Mycobacterium tuberculosis K85]
          Length = 374

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L ++DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 58  RSPLVILDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 117

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 118 DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 174

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 175 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 232

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 233 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 292

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 293 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAEL 352

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 353 ATRFGVESSIARLQKALDT 371


>gi|320011768|gb|ADW06618.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Streptomyces flavogriseus ATCC 33331]
          Length = 302

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 140/308 (45%), Gaps = 27/308 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R + + +     +  
Sbjct: 1   MLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDDLVACMDADW-- 58

Query: 68  PAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               +R ++ P YKA+R             ++P+ L PQ+P++     A GI  + +  +
Sbjct: 59  -RPQWRVDLIPTYKAHRVAAETAEGLPDEEEVPDTLSPQVPVIEAVLDALGIARVGVSPY 117

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVI 169
           EADD+I T T  A      V I++ D+DL QLV       +   +K     +  D E + 
Sbjct: 118 EADDVIGTLTGRAT---GPVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQVTDEEWLR 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--- 226
            K+G+     V L  L GD  D +PG+PGIG KTAA LL  +G+L  I+           
Sbjct: 175 GKYGVDGAGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDAFGDLAGIMAAVDDPAARLT 234

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             +R  + E  +   ++ K+V +  DVP+      L  E  +   L +          + 
Sbjct: 235 PSQRRRLDEARDYVAVAPKVVRVADDVPLPGFDPALPREPRDPAALEALAARWGLGNSLQ 294

Query: 287 RVATTYDC 294
           R+  T   
Sbjct: 295 RLLLTLQA 302


>gi|325521684|gb|EGD00447.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 228

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 82/217 (37%), Positives = 128/217 (58%), Gaps = 1/217 (0%)

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +L+  RKE  A + A +FD    TFR+++Y DYKANRP +P  L  Q+  +  A +A G 
Sbjct: 1   MLRRMRKEVSAEYSACVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGW 60

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
           P + ++G EADD+I T    AE+ G  V + + DKDL QLV+    L +T+  E +D + 
Sbjct: 61  PLLMVEGVEADDVIGTLAREAERCGMNVIVSTGDKDLAQLVTDRVTLVNTMTNETLDRDG 120

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           VI K+G+PPE+++   AL GD++DN+PG+   G KTA   L +Y +L+ ++ +A+ IK  
Sbjct: 121 VIAKFGVPPERIIDYLALIGDTVDNVPGVEKCGPKTAVKWLTQYDSLDGVIEHAAEIKG- 179

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
              +N+    +   L RKLV + T   +   LE + +
Sbjct: 180 VVGDNLRRALDFLPLGRKLVTVETACDLAPHLESIDV 216


>gi|226530274|ref|NP_001151880.1| DNA polymerase I [Zea mays]
 gi|195650551|gb|ACG44743.1| DNA polymerase I [Zea mays]
          Length = 422

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 170/348 (48%), Gaps = 56/348 (16%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA---------IAGFCNMLWKLLQNSR 53
            ++ + LVDG+S +YR++Y    L++   G   +A         I    ++L  +L    
Sbjct: 90  SKSRIMLVDGTSMMYRSYYKI--LAQLQHGQLEHADGNGDWVLTIFKALSLLLDML---- 143

Query: 54  KESIASHFAVIFDY-------------------PAVTFRNEIYPDYKANRPKIPEMLLPQ 94
            E I SH AV+FD+                     +TFR+ +YP YK+NR   P+ ++  
Sbjct: 144 -EFIPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPAYKSNRTPTPDTVVQG 202

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           +  ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L
Sbjct: 203 MQYLKASIKAMSIKVIEVPGVEADDVIGTLAINSVSAGYKVRIVSPDKDFFQILSPSLRL 262

Query: 155 YDTV----KEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                         +E  +K++G + P + V + AL+G   DNIPG+ GIG   A  L+ 
Sbjct: 263 LRIAPRGSGMVSFGVEDFVKRYGPLKPSQFVDVVALSGYKADNIPGVEGIGDINAVKLIS 322

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILED 266
           ++G+L+N+L +   ++ ++ ++ ++ Y+E A L + L  LR+D+P   +      L+ + 
Sbjct: 323 KFGSLDNLLKSVDEVEDERIKQALISYSEQAILCKNLATLRSDLPHYMVPFKTADLVFKK 382

Query: 267 C--NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENK 312
              +G + I  L+ALE              + +++ P++       NK
Sbjct: 383 PQDDGEKFIKLLRALEAY-----------AEGSSVNPIIRRAAYLWNK 419


>gi|28395579|gb|AAO39143.1| exodeoxyribonuclease IX-like protein [Photorhabdus luminescens]
          Length = 252

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 138/261 (52%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   I    + L +L+Q++      +H   +F
Sbjct: 3   HLLIVDALNLIRRI-HAV-------QGSP--CIPACEHALRQLIQHTH----PTHAVAVF 48

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++I PDYKA R  +P+ L  ++P +R + +  G+     +G EADD+ AT
Sbjct: 49  DEENRSHSWRHQILPDYKAGRSAMPDNLQQEMPQIRASFEQQGVACWHAEGHEADDLAAT 108

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ PE++    
Sbjct: 109 LAVKVTSAGHNVTIVSTDKGYCQLLSPNIRIRDYFQKRWLDMPFVQQEFGVLPEQLPDYW 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPGI GIG KTAA LLQ+ G L+N+  N  + +  K R  +    E A +S
Sbjct: 169 GLAGISSSKIPGIQGIGPKTAATLLQQAGTLDNLFQNLDQ-QPDKWRNKLESNKEMAFIS 227

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           R++  LRTD+ +   L+ L L
Sbjct: 228 REVASLRTDLDLNGNLQQLRL 248


>gi|31793273|ref|NP_855766.1| 5'-3' exonuclease [Mycobacterium bovis AF2122/97]
 gi|31618865|emb|CAD96970.1| 5'-3' exonuclease [Mycobacterium bovis AF2122/97]
          Length = 374

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 58  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVIIQQRPNRLAVCLDL 117

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 118 DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 174

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 175 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 232

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 233 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 292

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 293 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAEL 352

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 353 ATRFGVESSIARLQKALDT 371


>gi|121637975|ref|YP_978199.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224990469|ref|YP_002645156.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121493623|emb|CAL72098.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224773582|dbj|BAH26388.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 355

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 39  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 98

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 99  DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 155

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 156 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 213

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 214 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 273

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 274 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAEL 333

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 334 ATRFGVESSIARLQKALDT 352


>gi|239978548|ref|ZP_04701072.1| 5'-3' exonuclease [Streptomyces albus J1074]
 gi|291450444|ref|ZP_06589834.1| 5'-3' exonuclease [Streptomyces albus J1074]
 gi|291353393|gb|EFE80295.1| 5'-3' exonuclease [Streptomyces albus J1074]
          Length = 301

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 26/303 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R +++ +     +  
Sbjct: 1   MLLDTASLYFRAYFGVPDTVRAPDGTPVNAVRGLLDFIARLVQDHRPDTLVACMDADW-- 58

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            + P+ L PQ+P++     A GI   E  G+E
Sbjct: 59  -RPAWRVELIPTYKAHRVAEETPEGPDVEETPDTLSPQVPVIEAVLDALGIARAEAAGYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIK 170
           ADD+I T    AE     V I++ D+DL QLV       +   +K     +  D E + +
Sbjct: 118 ADDVIGTLATAAE---GPVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQLTDEELLRE 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK-- 228
           K+G+       L  L GD  D +PG+PG+G KTAA LL  YG++  I+  A   + K   
Sbjct: 175 KYGVDGAGYAELALLRGDPSDGLPGVPGVGEKTAAKLLAAYGDVAGIVAAAEDPRSKVTP 234

Query: 229 -RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +R+ +LE      ++ K+V + TD+ +      L     +   L +  +       + R
Sbjct: 235 AQRKRLLEARPYLAVAPKVVRVATDIELAPFDPALPSTPRDPEALAALAERWNLGGSLER 294

Query: 288 VAT 290
           +  
Sbjct: 295 LLA 297


>gi|326919514|ref|XP_003206025.1| PREDICTED: HAUS augmin-like complex subunit 3-like [Meleagris
            gallopavo]
          Length = 1077

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 104/336 (30%), Positives = 169/336 (50%), Gaps = 30/336 (8%)

Query: 659  QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            Q+N   +     I+  ++L  I    A  L   I          ++   T+TGRL+S  P
Sbjct: 743  QLNTEQHQ--NLIMNLQKLYTIMMGLAHDLQGFICP-------TWNQTGTVTGRLSSKHP 793

Query: 719  NLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELRILAHIAK 763
            N+Q I   P++    Q I            R  F+S      ++AD+SQIELRILA ++ 
Sbjct: 794  NIQGISKHPVRIKKKQYIKGKEEEIVTISPRALFVSKKGYTFLAADFSQIELRILADLSA 853

Query: 764  ITPLYQVFEN--SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
               L ++F+   + DI   +A++  G+  E+V    R  AK I +S++YG    RLA  L
Sbjct: 854  EPELLKLFQEPETADIFTSLASQWKGIPSEQVKQTDREQAKRIVYSVVYGAGKERLAECL 913

Query: 822  RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
             I   EA+ +I+ +  ++  +HE+ +KT    +  GYV +I GR+     I+S    +R 
Sbjct: 914  GITPLEASCFIESFMQKYKKVHEFTKKTIGQCQNKGYVVSIMGRKRLLANIHSQDYKLRT 973

Query: 882  INERAAINAPIQGSAADITRRAMISVH-KSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
              ER A+N  +QGSAAD+ + AM+ +    +    L  +++ QIHDEL+FEV + +I   
Sbjct: 974  QAERQAVNFVVQGSAADLCKMAMVEIFTSVVVSPTLTARLIAQIHDELLFEVEDSQIQEF 1033

Query: 941  SQIIVHSMEK---ACLPKINLRVPLKVNIKVSNNWQ 973
            S ++  +ME        ++ L+VPLKV +    +W 
Sbjct: 1034 SALVKRTMESLQQTTALEVPLKVPLKVLLTTGKSWG 1069


>gi|218192373|gb|EEC74800.1| hypothetical protein OsI_10602 [Oryza sativa Indica Group]
          Length = 421

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/313 (29%), Positives = 160/313 (51%), Gaps = 39/313 (12%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA------IAGFCNMLWKLLQNSRKES 56
            ++ + LVDG+S +YR++Y    L++   G   +A      +      L  +L     E 
Sbjct: 89  SKSRIMLVDGTSVMYRSYYKI--LAQLQHGQLEHADGNGDWVLTIFKALSLVLDML--EF 144

Query: 57  IASHFAVIFDY-------------------PAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
           I SH AV+FD+                     +TFR+ +YP YK+NR   P+ ++  +  
Sbjct: 145 IPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLYPSYKSNRIPTPDTIVQGMQY 204

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           ++ + +A  I  IE+ G EADD+I T    +   G+ V I+S DKD  Q++SP+  L   
Sbjct: 205 LKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRIVSPDKDFFQILSPSLRLLRI 264

Query: 158 V----KEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                      +E  +K++G + P + V + AL+GD  DNIPG+ GIG   A  L+ ++G
Sbjct: 265 APRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITKFG 324

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDC-- 267
           +LEN+L +   +++++ ++ ++  +E A L + L  LR+D+P   +      L+ +    
Sbjct: 325 SLENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSDLPSYMVPFKTSDLVFQKPKD 384

Query: 268 NGPRLISFLKALE 280
           +G + I  L+ALE
Sbjct: 385 DGTKFIKLLRALE 397


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 774

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 104/347 (29%), Positives = 161/347 (46%), Gaps = 28/347 (8%)

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           Q  E         + ++   + +  + +T+  SL   ++ ++ RVH   +L +T TGRL+
Sbjct: 429 QAYENFGKEGCEALFSLCAIKSIDTMIATFLTSLQERVDNKS-RVHCSLNL-NTETGRLS 486

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           S  PNLQN P       +IR+AF + P   LI ADY Q+ELR+LA +     + + FE  
Sbjct: 487 SRGPNLQNQPALEKDTYQIRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAG 546

Query: 775 LDIHRMVAAEIFGVNIEKVSP------------------------QMRRHAKTINFSIIY 810
            D H   A ++F     KV                            RR AKT+NFSI Y
Sbjct: 547 GDFHSRTAMDMFDYVKAKVDSGEALLEWDYAKGDPPKPLVKDLFASERRKAKTLNFSIAY 606

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G + F L+    +   EA + +K ++   P +  +  + K   R +GY  T+ GR     
Sbjct: 607 GKTAFGLSDDWGVTLQEAEEMLKAWYKARPEVDVWQTQVKLTARNHGYTRTLMGRYRDLP 666

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
           E  S +       ERA+IN PIQG AADI   AM  ++ + +   L   +LLQ+HDE++ 
Sbjct: 667 EAKSKRQKFAKQAERASINTPIQGGAADIAMMAMNKINANEKLKALGWILLLQVHDEVML 726

Query: 931 EVPEEEITTASQIIVHSMEKAC-LPKINLRVPLKVNIK-VSNNWQEE 975
           E PEE    A   ++++M++      +   VPL V+       W + 
Sbjct: 727 EGPEETAKEAFDEVLNNMQEPWVFGLMKTAVPLLVDGSYTHKTWYDA 773



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 113/315 (35%), Gaps = 54/315 (17%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASF---KIITDTMDAFHSKPIAIAI----STLDQKDDTS 421
           T +      Q+ +++L     + F         +D     P+        S     D   
Sbjct: 2   TIVRTKAQAQKVLKRLFAADPSIFHACDTEVMAIDLKSVGPVGNGYVTCASVYSGPDFDY 61

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
              E     L +    D+ G       IL   K +FEN  FLK+ HN  +D+ V+   GI
Sbjct: 62  GLGEGPGSCLWIDNLDDAAG-------ILQEFKAWFENPRFLKVWHNYGFDRHVMWNEGI 114

Query: 482 SMRGF-EDIMLMSYVLDSGRS------SHDIASIAQKWLSY---TRKEILK-----SRKS 526
            ++G   D M M+ + D+ RS       + + ++    LS      KE+          S
Sbjct: 115 DVQGLGGDTMHMARLQDTCRSKMAKGGGYSLEALTADLLSRRKQPMKELFGVHRLRKDGS 174

Query: 527 SIPIDKISDSQ-----------VQEHAIENSNVILQLWLLLRPKLIV------EKLLHVY 569
              +  I   +             +++  ++     L   L  +L +      + L   Y
Sbjct: 175 EGALVDIPPVESMQRDPESRSMWIKYSCYDAEGTWLLREELEKRLKMKPWIGNKNLWDYY 234

Query: 570 ERLDKPMIDVVSQMEITGIQID-QDLLKQVSAEISKNLLSLEENIYDLS-------GEKF 621
               +P  +V++ ME  G++++ +D L  V  +  ++ +   +   + +       G   
Sbjct: 235 FLHMRPFAEVLTDMERRGVRVNAKDYLFNVERKAREDRVHHSKIFREWAASKIGPDGLAL 294

Query: 622 NLSSPKQLGDILFTK 636
           NLSS  QL  + F  
Sbjct: 295 NLSSATQLQALFFGG 309


>gi|329939069|ref|ZP_08288443.1| 5'-3' exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301954|gb|EGG45847.1| 5'-3' exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 301

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 26/305 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+++ R + + +     +  
Sbjct: 1   MLLDTASLYFRAYFGVPESLKAPDGTPVNAVRGLLDFIDRLVKDHRPDDLVACMDADW-- 58

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + +  +E
Sbjct: 59  -RPAWRVELIPSYKAHRVAEARPAGPDTEEVPDTLSPQVPIIEAVLDALGIARVGVAEYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEE----KIDIEHVIK 170
           ADD+I T+T  A      V I++ D+DL QLV       +   VK        D   + +
Sbjct: 118 ADDVIGTFTARAT---GPVDIVTGDRDLYQLVDDARGVRVLYPVKGVGTLLLTDEAVLRE 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---K 227
           K+G+       L  L GD  D +PG+PG+G KTAA LL E+G+L  +L      K     
Sbjct: 175 KYGVDGRGYADLATLRGDPSDGLPGVPGVGEKTAAKLLAEFGDLPGVLAAVEDPKARLTP 234

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +R  + E      ++ K+V +  DVP+      L     +   + +          + R
Sbjct: 235 TQRRRLTEALPYLEVAPKVVKVADDVPLPPVPTALPHTARDPEMVEALASRWGLGGSLQR 294

Query: 288 VATTY 292
           + TT 
Sbjct: 295 LLTTL 299


>gi|261822613|ref|YP_003260719.1| exonuclease IX [Pectobacterium wasabiae WPP163]
 gi|261606626|gb|ACX89112.1| 5'-3' exonuclease, SAM-fold domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 264

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   I    + L +L+QNS+     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CITACQHALHQLIQNSQ----PTHAVAVF 49

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+ + PDYKA R  +P+ L  +LP ++ A    G+ +    G EADD+ AT
Sbjct: 50  DDDDRDTSWRHHLLPDYKAGRAPMPDNLQQELPQIKAAFSTMGVASWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL++P   + D  ++  +D+  + +++G+ P+++    
Sbjct: 110 LAVKLSSVGHQATIVSTDKGYCQLLAPHIQIRDYFQKRWLDLPFIEQEFGVSPQQLTDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG K+AA +LQ+ G+LE++      + +K  R+ + ++ E A +S
Sbjct: 170 GLAGISSSKIPGVAGIGPKSAAQILQQAGSLESLYQQLDAVPEKW-RKKLEQHKEMALIS 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  LRTD+ +   L+ L L 
Sbjct: 229 RQIATLRTDLTLNGNLQQLRLP 250


>gi|311278246|ref|YP_003940477.1| 5'-3' exonuclease, SAM-fold domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747441|gb|ADO47193.1| 5'-3' exonuclease, SAM-fold domain protein [Enterobacter cloacae
           SCF1]
          Length = 277

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P        +     L+   + S  +H   +F
Sbjct: 17  HLLIVDALNLIRRI-HAV-------QGTP------CKDTCLHALEQLIRHSQPTHAVAVF 62

Query: 66  DYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D  A    +R++  PDYKA R  +P+ L  ++P +R A + +G+P    QG EADD+ AT
Sbjct: 63  DDEARNSGWRHQRLPDYKAGRAPMPDDLHSEMPAIRAAFEQYGVPCWGAQGNEADDLAAT 122

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL+SPT  + D  ++  +D   +  ++G+ P+++    
Sbjct: 123 LAIKVANAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAPFIASEFGVAPQQLPDYW 182

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G     +PG+ GIG K+AA LL E+ +LE I      + +K  R+ +  + E A + 
Sbjct: 183 GLAGIGSSRVPGVAGIGPKSAAQLLNEFQSLEGIYARLDDVPEKW-RKKLEAHQEMAFIC 241

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           R +  L+TD+ +   L+ L L
Sbjct: 242 RDVARLQTDLQLDGNLQQLRL 262


>gi|300724808|ref|YP_003714133.1| exonuclease IX, 5'-3' exonuclease [Xenorhabdus nematophila ATCC
           19061]
 gi|297631350|emb|CBJ92045.1| exonuclease IX, 5'-3' exonuclease [Xenorhabdus nematophila ATCC
           19061]
          Length = 251

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/261 (31%), Positives = 138/261 (52%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   +    + L +L+ +    +  +H   +F
Sbjct: 3   HLLIVDALNLIRRI-HAV-------QGSP--CVPACEHALKQLITH----ASPTHAVAVF 48

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R+++ PDYKA R  +P+ L  ++PL++ A    G+     QG EADD+ AT
Sbjct: 49  DEDDRSHSWRHQLLPDYKAGRSAMPDDLQQEMPLIKQAFNTLGVACWHTQGHEADDLAAT 108

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 109 LATKVANSGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDLPFVQQEFGVSPNQLPDYW 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPGI GIG KTAA LLQ+ G+L+N+  +    +  K R+ +  + E A +S
Sbjct: 169 GLAGISSSKIPGIQGIGPKTAATLLQQTGSLDNLFQHLEN-QPDKWRKKLESHKEMAYIS 227

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           R++  L+TD+ +   L+ L L
Sbjct: 228 REVASLKTDLSLQGNLQQLRL 248


>gi|13357976|ref|NP_078250.1| DNA polymerase I [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762216|ref|YP_001752498.1| hypothetical protein UPA3_0432 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920415|ref|ZP_02931734.1| Exo [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508564|ref|ZP_02958081.1| Exo [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701745|ref|ZP_02971432.1| Exo [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|17367031|sp|Q9PQ75|EX53_UREPA RecName: Full=5'-3' exonuclease
 gi|11280430|pir||C82895 DNA polymerase I 5'-3'-exonuclease domain homolog UU414 [imported]
           - Ureaplasma urealyticum
 gi|6899402|gb|AAF30825.1|AE002138_12 DNA polymerase I: 5'-3' exonuclease domain protein [Ureaplasma
           parvum serovar 3 str. ATCC 700970]
 gi|168827793|gb|ACA33055.1| Exo [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902857|gb|EDT49146.1| Exo [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676010|gb|EDT87915.1| Exo [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701015|gb|EDU19297.1| Exo [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 289

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 150/294 (51%), Gaps = 16/294 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K     ++DG+S IYRAF+AT      + +   +P NAI    +M++K+L   +    
Sbjct: 1   MKKA---IVIDGNSLIYRAFHATYKQAEWAVEKQLMPTNAIKLVASMIFKILNQEQ---- 53

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            ++  +  D    TFR + Y  YKA R  +   L+ QLP ++    A G   I   G EA
Sbjct: 54  FTYGLIAMDASKQTFRAQEYAAYKATRKPMDAKLIVQLPYLKKLFVAMGFRIISQPGIEA 113

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW----- 172
           DD + +++ +  K     TI S+D+D++QL++  T L        +  E  +  +     
Sbjct: 114 DDFVGSFSNLMNKFDVDTTIYSSDRDMLQLINKNTKLKLLKTGTSVMQEINLTNFSLLNN 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           GI P +++  + L GDS DN+ G+ GIG KTA  LL +Y N+ENI  N  +I     +  
Sbjct: 174 GILPYQIIEYKGLVGDSSDNLIGVKGIGPKTAINLLLKYDNIENIYTNLEKIAPS-VKNK 232

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           ++E+ + A LS+KL  ++TD+     LE+ +L+  N   L     +L+   + N
Sbjct: 233 LIEHKDMAFLSKKLAAIQTDLLFDEKLENFVLKPYNTQELDELFTSLKINNMQN 286


>gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
 gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
          Length = 992

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 130/280 (46%), Gaps = 26/280 (9%)

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQN P       KIR+AF++ P   LI ADY Q+ELRILAH+A    +   F    D H 
Sbjct: 710 LQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLADCKSMLDAFRAGGDFHS 769

Query: 780 MVAAEIFGVNIEKVSPQ--------------------------MRRHAKTINFSIIYGIS 813
             A  ++    E V  +                           RR AK +NFSI YG +
Sbjct: 770 RTAMNMYPHIREAVDEEKVILEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKT 829

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
           P  LA   ++   EA D +K ++     +  +  K K    +   V T+ GR   +  + 
Sbjct: 830 PHGLARDWKVSVKEAKDTLKLWYSDRKEVLAWQMKQKQLAHEKSEVYTLLGRSRRFPNMA 889

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
              S  R   ERAAINAP+QGSAAD+   AM+ + ++    +L   +LLQ+HDE++ E P
Sbjct: 890 HATSGQRGHIERAAINAPVQGSAADVAMCAMLEIDRNTRLKELGWTLLLQVHDEVILEGP 949

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            E    A  I+V  M K       L+V L V+ K + NW 
Sbjct: 950 SESAELAKSIVVECMSKPFYGTNILKVDLAVDAKCAQNWY 989



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 136/409 (33%), Gaps = 64/409 (15%)

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           I  V    + +     P     +++  K   +ET +  D          +++ + +   +
Sbjct: 170 IKPVKRPKESEVEAHWPNGPKFHSSLPKISEVETSLPFDENATDGHAKDVNEGSPEETVQ 229

Query: 345 QTPQKLFLERLQKLSQYPINND-SYTKIVNTKDIQQWVQKLETIGSASF----KIITDTM 399
            +P +  L +    ++  +        +V+     + V +L T    ++        D +
Sbjct: 230 PSPARAPLSQESIDARKALATIYDKVLVVDNVMSARSVVQLLTTKYRNYIHACDTEVD-I 288

Query: 400 DAFHSKPIAIA----ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
           D     P+        S                 D     +           ++L     
Sbjct: 289 DVKQETPVGHGKVTCFSIYSGTKGAE-------ADFGNGKTCIWVDVLDGGPDVLMEFAP 341

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASIAQK 511
           FFE+    K+ HN  +D  V+  YGI + GF  D M ++ + DS R     + +  +   
Sbjct: 342 FFEDSSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSRRTDGGYSLEGLTND 401

Query: 512 W--LSYTRKEILKSRKSSI-------------------PIDKISDSQVQE------HAIE 544
              +    KE+ K  K S+                    I+ +   Q ++      ++  
Sbjct: 402 HRVMGVVSKELRKIGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQREDRELWICYSSL 461

Query: 545 NSNVILQLWLLLRPKLIVE----------KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           +S   L+L+  L+ KL  +           L   YE   +P   ++ +ME  G+ +D+  
Sbjct: 462 DSMSTLKLYESLKSKLERKPWTFDGCPRGSLYDFYEEYWRPFGAILVKMETAGMLVDRAY 521

Query: 595 LKQVSAEISKNLLSLEENIYDLS------GEKFNLSSPKQLGDILFTKL 637
           L ++            +   + +       +  N++S  Q+  + F  +
Sbjct: 522 LSEIEKVAVAQRKLAADKFRNWASKYCPDAKYMNVNSDTQIRQLFFGGI 570


>gi|183983075|ref|YP_001851366.1| 5'-3' exonuclease [Mycobacterium marinum M]
 gi|183176401|gb|ACC41511.1| 5'-3' exonuclease [Mycobacterium marinum M]
          Length = 318

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/317 (28%), Positives = 147/317 (46%), Gaps = 33/317 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S  +R+++  P      DG P+NA+ GF + +  ++   R   +A    + +
Sbjct: 4   PLLLLDGASMWFRSYFGVPSSITAPDGRPINAVRGFIDSMAVVITQHRPSRLAVCLDLDW 63

Query: 66  DYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 FR ++ P YKA+R             ++P+ L PQ+ ++     AFGIPA    
Sbjct: 64  ---RPQFRVDLIPSYKAHRVAEPEPAGQPDVEEVPDELTPQVDMIMELLDAFGIPAAGAA 120

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIE 166
           GFEADD++ T    A+++   V ++S D+DL+Q+V+                K       
Sbjct: 121 GFEADDVLGTLA--AQEQRDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLSKATLFGPS 178

Query: 167 HVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V +++G+P E+       L  L GD  D +PG+PG+G KTAA LL ++G+L+ I+  A 
Sbjct: 179 EVAERYGLPAERAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLDRIVAAAH 238

Query: 223 RIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLK 277
             K    K  R  +L  +     +R +V + TD P+T   P + L L   +  R      
Sbjct: 239 DPKSTMAKGVRTKLLAASAYIDAARSVVRVATDAPVTFTTPTDALPLVAADPQRTAELAT 298

Query: 278 ALEFTKLINRVATTYDC 294
                  I R+    D 
Sbjct: 299 EYGVGSSIARLQKALDA 315


>gi|254364903|ref|ZP_04980949.1| hypothetical 5-3 exonuclease [Mycobacterium tuberculosis str.
           Haarlem]
 gi|308376910|ref|ZP_07440493.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu008]
 gi|134150417|gb|EBA42462.1| hypothetical 5-3 exonuclease [Mycobacterium tuberculosis str.
           Haarlem]
 gi|308349570|gb|EFP38421.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu008]
          Length = 337

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 21  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 80

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 81  DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 137

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 138 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 195

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 196 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 255

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 256 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAEL 315

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 316 ATRFGVESSIARLQKALDT 334


>gi|218547683|ref|YP_002381474.1| exonuclease IX [Escherichia fergusonii ATCC 35469]
 gi|218355224|emb|CAQ87831.1| exonuclease IX (5'-3' exonuclease) [Escherichia fergusonii ATCC
           35469]
          Length = 281

 Score =  235 bits (600), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/264 (31%), Positives = 127/264 (48%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHVVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD       +R++  PDYKA RP +P+ L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRNSGWRHQRLPDYKAGRPPMPDELHNEMPTLRAAFEQRGVPCWSATGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLEMHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           L R +  L+TDV I   L+ L L+
Sbjct: 257 LCRDIARLQTDVHIDGNLQQLRLK 280


>gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
 gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
          Length = 531

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 111/494 (22%), Positives = 215/494 (43%), Gaps = 68/494 (13%)

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV-- 598
           + +++  +   +    RP++  +KL  V   L+   +  ++ ME+ G+ ID +  + +  
Sbjct: 41  YMVQDIEIPYAIAQHQRPRIKEQKLARVVH-LENEAVPALAAMEMRGVCIDVERWRSILA 99

Query: 599 -----SAEISKNLLSLEENIYDLSGEKFNLS--------------SPKQLGDILFTKLKF 639
                   +   L          + + + ++              +P Q    LF +   
Sbjct: 100 RKQARQQALEPGLRETLGTALQRACDDYQVALTREEKRLVEAYRANPAQSSWGLFRRKGL 159

Query: 640 PSGAKTKTGQWKT---------------------------TAQDLEQINCGDNPIIKNIL 672
                T     +                            T ++  +    ++  + ++L
Sbjct: 160 AQWQATHKKPPQPKERGTINLASPPQLLAALRALGVPVSATDEETLEPYAKEHAAVASLL 219

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ- 731
           +W++L K  S++ ++L   ++    R+ T Y+     +GR+   +PNLQ IP + +    
Sbjct: 220 QWKELHKFASSFGENLLAMVDTDG-RLRTDYAQIGAASGRIICSKPNLQQIPAEEEEEGQ 278

Query: 732 --KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
              +R  F++PP  +++ AD S IELRILA +++   + ++F    D+H   A  +F ++
Sbjct: 279 EEPVRHCFVAPPGYRILKADLSNIELRILAEVSRDQTMLRLFAEGKDLHAETAKLMFHLS 338

Query: 790 IEKVSPQM-------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            E  + +        R+ AKTINF + YG+    LA +  +    A   I+ YF  + GI
Sbjct: 339 PETDTKRHLYKGVPGRKIAKTINFGLAYGMGANGLANRAGVDLPTAKSLIRTYFETYRGI 398

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEIN---SPKSSIRNINERAAINAPIQGSAADI 899
             ++  T     + GY  T+ GRR  +  I         +R   ER+A N PI+G+ ADI
Sbjct: 399 ARWLPLTAKQALEQGYAVTLAGRRRTFASIPTSVDWNREVRASAERSAKNHPIRGTNADI 458

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN-L 958
            +RA+  +H SL        ++L +HDE+V E PEE +  A+ ++  +M +AC   +  +
Sbjct: 459 LKRALALLHASLPS---GAHLILAVHDEIVVECPEECVEEAAGVMRAAMVQACRDFLKVV 515

Query: 959 RVPLKVNIKVSNNW 972
            +P +  + +   W
Sbjct: 516 HIP-EPEVLIGTYW 528


>gi|123443498|ref|YP_001007471.1| exonuclease IX [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|156630388|sp|A1JP96|XNI_YERE8 RecName: Full=Protein Xni
 gi|122090459|emb|CAL13327.1| exodeoxyribonuclease IX [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 251

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 140/262 (53%), Gaps = 19/262 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP-VNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           HL +VD  + I R  +A         G P VNA     + L +L+ +S+     +H   +
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSPSVNACQ---HALQQLISHSQ----PTHAVAV 48

Query: 65  FDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           FD    + ++R++  PDYKA R  + + L  ++PL+R A  + G+      G EADD+ A
Sbjct: 49  FDEDDRSDSWRHQSLPDYKAGRSPMSDNLQQEMPLIREAFNSLGVNCWSSPGNEADDLAA 108

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++   
Sbjct: 109 TLAVKIGGAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPDY 168

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L G S   IPG+ GIG KTAALLLQ+  +LE +      + +K  R+ + ++ E A +
Sbjct: 169 WGLAGISSSKIPGVAGIGAKTAALLLQQASSLEQLYQELDSVPEKW-RKKLQQHQEMAFI 227

Query: 243 SRKLVMLRTDVPITIPLEHLIL 264
            +++  L+TD+P++  L+ L L
Sbjct: 228 CKQIATLKTDLPLSGNLQQLRL 249


>gi|308380268|ref|ZP_07489325.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu011]
 gi|308362076|gb|EFP50927.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu011]
          Length = 337

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 142/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 21  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 80

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 81  DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 137

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 138 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 195

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 196 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 255

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P +   L   +  R    
Sbjct: 256 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAEL 315

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 316 ATRFGVESSIARLQKALDT 334


>gi|118617832|ref|YP_906164.1| 5'-3' exonuclease [Mycobacterium ulcerans Agy99]
 gi|118569942|gb|ABL04693.1| 5'-3' exonuclease [Mycobacterium ulcerans Agy99]
          Length = 318

 Score =  235 bits (599), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 90/317 (28%), Positives = 147/317 (46%), Gaps = 33/317 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S  +R+++  P      DG P+NA+ GF + +  ++   R   +A    + +
Sbjct: 4   PLLLLDGASMWFRSYFGVPSSITAPDGRPINAVRGFIDSMAVVITQHRPSRLAVCLDLDW 63

Query: 66  DYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 FR ++ P YKA+R             ++P+ L PQ+ ++     AFGIPA    
Sbjct: 64  ---RPQFRVDLIPSYKAHRVAEPEPAGQPDVEEVPDELTPQVDMIMELLDAFGIPAAGAA 120

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIE 166
           GFEADD++ T    A+++   V ++S D+DL+Q+V+                K       
Sbjct: 121 GFEADDVLGTLA--AQEQRDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLPKATLFGPS 178

Query: 167 HVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V +++G+P E+       L  L GD  D +PG+PG+G KTAA LL ++G+L+ I+  A 
Sbjct: 179 EVAERYGLPAERAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLDRIVAAAH 238

Query: 223 RIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLK 277
             K    K  R  +L  +     +R +V + TD P+T   P + L L   +  R      
Sbjct: 239 DPKSTMAKGVRTKLLAASAYIDAARSVVRVATDAPVTFTTPTDALPLVAADPQRTAELAT 298

Query: 278 ALEFTKLINRVATTYDC 294
                  I R+    D 
Sbjct: 299 EYGVGSSIARLQKALDA 315


>gi|238792765|ref|ZP_04636396.1| Uncharacterized exonuclease xni [Yersinia intermedia ATCC 29909]
 gi|238727873|gb|EEQ19396.1| Uncharacterized exonuclease xni [Yersinia intermedia ATCC 29909]
          Length = 250

 Score =  235 bits (599), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 132/264 (50%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G    N     LQ   + S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCINACQHALQQLIQHSQPTHAVA 47

Query: 64  IFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    + ++R++  PDYKA R  +P+ L  ++P +R A  + G+      G EADD+ 
Sbjct: 48  VFDEDDRSDSWRHQRLPDYKAGRSPMPDNLQQEMPQIREAFTSLGVACWHSPGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++  
Sbjct: 108 ATLATKIGGAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG KTAALLLQ   NLE +  +   + +K  R+ + ++ + A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGAKTAALLLQHASNLEALYQDLESVPEKW-RKKLQQHQDMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           + +++  LRTD+P+   L+ L L 
Sbjct: 227 ICKQIATLRTDLPLNGNLQQLRLP 250


>gi|146312892|ref|YP_001177966.1| exonuclease IX [Enterobacter sp. 638]
 gi|145319768|gb|ABP61915.1| 5'-3' exonuclease [Enterobacter sp. 638]
          Length = 264

 Score =  235 bits (599), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 134/266 (50%), Gaps = 17/266 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    HL +VD  + I R  +A      K             N L +L+++S+     +H
Sbjct: 12  MSVAVHLLIVDALNLIRRI-HAVQGTPCKDT---------CLNALEQLIRHSQ----PTH 57

Query: 61  FAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
              +FD  A    +R+++ PDYKA R  +P+ L  ++P +R A +  G+P    QG EAD
Sbjct: 58  VVAVFDDEARNTGWRHQLLPDYKAGRAPMPDDLHAEMPTIRAAFEHRGVPCWGAQGNEAD 117

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+ AT        G   TI+STDK   QL+SPT  + D  ++  +D   +  ++G+ P++
Sbjct: 118 DLAATLAIKVAGAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAPFIASEFGVSPQQ 177

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +     L G S   +PG+ GIG K+AA LL ++ +LE I  +   + +K  R+ +  + E
Sbjct: 178 LPDYWGLAGISSSKVPGVAGIGPKSAAQLLTDFQDLEGIYAHIDDVPEKW-RKKLEAHKE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL 264
            A + R +  L+ D+ +   L+ L L
Sbjct: 237 MAFICRDVAKLQIDLQLDGNLQQLRL 262


>gi|268590545|ref|ZP_06124766.1| exodeoxyribonuclease IX [Providencia rettgeri DSM 1131]
 gi|291313932|gb|EFE54385.1| exodeoxyribonuclease IX [Providencia rettgeri DSM 1131]
          Length = 266

 Score =  234 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 83/278 (29%), Positives = 132/278 (47%), Gaps = 17/278 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R  +A         G P              +      + A+H   +F
Sbjct: 3   HLLIIDALNLIRRI-HAV-------QGSPCG------ETCLSAISQLIAHTDATHIVAVF 48

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+E  PDYKA R  +PE L  +LP +    +  G+   + +G EADD+ AT
Sbjct: 49  DEEGRHQSWRHEKLPDYKAGRQPMPEDLHAELPTLIALFKEKGVHCWQSEGDEADDLAAT 108

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SP   + D  ++  +DI  + K++G+ P ++    
Sbjct: 109 LATRIAGSGHTVTIVSTDKGYCQLLSPNLRIRDYFQKRWLDIPFIEKEFGVSPNQLPDYW 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PG+ GIG K+A  LLQ+Y ++ENI  N   +++K  ++ ++   E A + 
Sbjct: 169 GLAGISSSKVPGVAGIGPKSATTLLQQYHSIENIFANLDNLEEKW-QKKLINQQEIALIC 227

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
           R +  LRTD+PI   L  L     N  +    +    F
Sbjct: 228 RDIATLRTDIPIRGNLNQLRYAPTNRKQKSHLMMKWLF 265


>gi|271499485|ref|YP_003332510.1| 5'-3' exonuclease, SAM-fold domain-containing protein [Dickeya
           dadantii Ech586]
 gi|270343040|gb|ACZ75805.1| 5'-3' exonuclease, SAM-fold domain protein [Dickeya dadantii
           Ech586]
          Length = 253

 Score =  234 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 86/262 (32%), Positives = 137/262 (52%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A             + +    + L +LLQ+SR     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAVQGS---------SCLTACQHALNQLLQHSR----PTHAVAVF 49

Query: 66  D--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D  +   ++R+++ P+YKA R  +PE L  +LP +R A  A G+ +    G EADD+ AT
Sbjct: 50  DDEHRDQSWRHQLLPEYKAGRAPMPENLSYELPQIREAFLALGVASWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                  +G   TI+STDK   QL++PT  + D  ++  +D+  + +++G+ P ++    
Sbjct: 110 LASKVAAQGHQATIVSTDKGYCQLLAPTLRIRDYFQKRWLDVPFIQQEFGVQPAQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG KTAA LLQ+ G+LE +     +I +K RR  +    E A   
Sbjct: 170 GLAGISSSKIPGVSGIGPKTAAQLLQQAGSLEALYQQLEQIPEKWRR-KLESQQEMAYRC 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  LRTD+ +   L+ L L 
Sbjct: 229 RQVATLRTDLVLNGNLQQLRLP 250


>gi|290961715|ref|YP_003492897.1| 5'-3' exonuclease [Streptomyces scabiei 87.22]
 gi|260651241|emb|CBG74363.1| putative 5'-3' exonuclease [Streptomyces scabiei 87.22]
          Length = 316

 Score =  234 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 26/309 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +S  +RA++  P   +  DG PVNA+ G    + +L+++ R   + +     +
Sbjct: 14  RLMLLDTASLYFRAYFGVPESVKAPDGTPVNAVRGLLEFIDRLVKDHRPTDLVACTDADW 73

Query: 66  DYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
                 +R ++ P YKA+R            ++P+ L PQ+P++     A GI  + + G
Sbjct: 74  ---RPQWRVDLIPSYKAHRVAEEHEAGPDEEQVPDTLSPQVPVIEAVLDALGIARVGVAG 130

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHV 168
           +EADD+I T+T +A+     V I++ D+DL QLV       +   +K     +  D   +
Sbjct: 131 YEADDVIGTFTALAKD---PVDIVTGDRDLYQLVDDAREVRVLYPLKGVGTLQLTDEAWL 187

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK- 227
            +K+G+       L  L GD  D +PG+PGIG KTAA LL ++G+L  I+        K 
Sbjct: 188 REKYGVVGRGYADLALLRGDPSDGLPGVPGIGEKTAAKLLDQFGDLAGIMAAVDDPAAKL 247

Query: 228 --KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
              +R+ + E      ++ K+V++  DVP+      L     +   L +  +       +
Sbjct: 248 TPSQRKRLDEARPYVAVAPKVVLVAADVPLPDVDTALPHAPKDPAALEALAERWGLGGSL 307

Query: 286 NRVATTYDC 294
            R+  T   
Sbjct: 308 QRLLGTLQA 316


>gi|238784867|ref|ZP_04628867.1| Uncharacterized exonuclease xni [Yersinia bercovieri ATCC 43970]
 gi|238714184|gb|EEQ06196.1| Uncharacterized exonuclease xni [Yersinia bercovieri ATCC 43970]
          Length = 252

 Score =  234 bits (598), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 138/262 (52%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   I    + L +L+Q+S+     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CIKACQHALQQLIQHSQ----PTHAVAVF 49

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++  PDYKA R  +P+ L  ++PL+R A  + G+      G EADD+ AT
Sbjct: 50  DEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIREAFNSLGVACWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 110 LATKISGTGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG KTA LLLQ+   LE +      + +K  R+ +  + + A + 
Sbjct: 170 GLAGISSSKIPGVAGIGAKTATLLLQQANTLEALYQGLESVPEKW-RKKLQLHQDMAFIC 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           +K+  L+TD+P++  L+ L L+
Sbjct: 229 KKIATLKTDLPLSGNLQQLRLQ 250


>gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 824

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 102/338 (30%), Positives = 156/338 (46%), Gaps = 31/338 (9%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I  + +   +  + S +   L  + I     RVH   ++ +T TGRL++  P+LQN P  
Sbjct: 487 IDALNDVAAIDTLLSNFIIPLQGDDIRGPEGRVHGALNI-NTETGRLSARRPSLQNQPAL 545

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI- 785
                 IR+AF + P   L+ ADY Q+ELR+LAH+A    + + FE   D H   A  + 
Sbjct: 546 EKDRYGIRKAFTAGPGNILVVADYGQLELRLLAHMADCKSMQEAFEAGGDFHSRTALGMY 605

Query: 786 ---------------FGVNIEKVSPQ------------MRRHAKTINFSIIYGISPFRLA 818
                          +G   E V  +             RR AK +NFSI YG +   LA
Sbjct: 606 SNIKEAIDKGEVVLEYGEQEETVDEKDRPALVKDVFASERRKAKVLNFSIAYGKTAHGLA 665

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
                   EAA+ ++ ++   P + E+ E  K    +   V T+ GR  +  + +S   +
Sbjct: 666 KDWGTSLEEAANTVELWYADRPEVREWQEVQKKMAVEKNLVRTLLGRVRNLPDASSKNEA 725

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            ++   RA+IN PIQG AADI   AM+ + +     +L  K+L+QIHDE++ E PEE   
Sbjct: 726 FKSHALRASINTPIQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKD 785

Query: 939 TASQIIVHSMEKACLPKIN-LRVPLKVNIKVSNNWQEE 975
            A  +  + ME      +N L V L V+   +  W E 
Sbjct: 786 EALALTKYHMENPFPGHVNLLNVALAVDGDYAKTWYEA 823



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 96/279 (34%), Gaps = 63/279 (22%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE-DIMLMSYVLDSGR---SSH 503
           +    K++FEN +  K+ HN  +D+ V+  + GI + GF  D M M+ + +S R     +
Sbjct: 112 VWEVFKEYFENANVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARLWNSNRKLDGGY 171

Query: 504 DIASIAQ---------KWLS---------YTRKEILKSRKSSI-----------PIDKIS 534
            + +++          + L             K+I    K              PI++I 
Sbjct: 172 SLEALSSSADAMSECAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTMILPPIEEIQ 231

Query: 535 D-----SQVQEHAIENSNVILQLWLLLRPKL------------------IVEKLLHVYER 571
           +      +  E++  ++     L   L  KL                      L   Y  
Sbjct: 232 EARDSRDRWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLWDFYTF 291

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-----GEKF-NLSS 625
                 ++++QME  G+ +D+  L        ++    E+   + +     G +  N+ S
Sbjct: 292 YLAEFGNLLTQMERNGLLVDKAHLAHAEKMAHEDKRVAEDYFRNWAASKCEGARIMNVGS 351

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
             Q+  +LF   K     K      +   Q+  +    D
Sbjct: 352 GLQVRQLLFAGAKNKRRDKPGVELTREFTQESSEWIAWD 390


>gi|256788770|ref|ZP_05527201.1| 5'-3' exonuclease [Streptomyces lividans TK24]
          Length = 301

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 26/279 (9%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+++ R E + +     +  
Sbjct: 1   MLLDTASLYFRAYFGVPDSVKAPDGTPVNAVRGLLDFIDRLVKDHRPEHLVACMDADW-- 58

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + + G+E
Sbjct: 59  -RPHWRVELIPSYKAHRVAEERPAGPDAEEVPDTLSPQVPVIEAVLDALGIARVGVAGYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIK 170
           ADD+I TYT  A      V I++ D+DL QLV       +   VK       +D   + +
Sbjct: 118 ADDVIGTYTARAT---GPVDIVTGDRDLYQLVDDARGVRVLYPVKGVGTLNLVDEAALRE 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---K 227
           K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  I       K     
Sbjct: 175 KYGVDGAGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIQAAVDDPKARLTP 234

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
            +R+ + E      ++ K+V +  DVP+      L    
Sbjct: 235 TQRKRLTEAGPYLAVAPKVVRVAADVPLPDTGTALPHGP 273


>gi|145594788|ref|YP_001159085.1| 5'-3' exonuclease [Salinispora tropica CNB-440]
 gi|145304125|gb|ABP54707.1| 5'-3' exonuclease [Salinispora tropica CNB-440]
          Length = 315

 Score =  234 bits (597), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 24/300 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L LVD  S  +RA++  P  +    DG PVNA+ GF +ML  L++  R +         
Sbjct: 14  PLMLVDAPSLYFRAYFGIPESAAVGPDGQPVNAVRGFLDMLASLIRTRRPDR----MVCA 69

Query: 65  FDYP-AVTFRNEIYPDYKANRPKI------PEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            D+     +R  + P YKA+R         P+ L PQ+PL+     A GI  +   G+EA
Sbjct: 70  MDHDWRPEWRVALLPSYKAHRVAPEGGEVVPDTLSPQVPLILDVLDALGITTVGATGYEA 129

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKK 171
           DD++ T +    + G  V ++S D+DL QLV                K    D   V  +
Sbjct: 130 DDVLGTLS--VTQPG-PVEVVSGDRDLFQLVDDARGVRLLYVGRGVAKLADCDDAAVQAR 186

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---K 228
           +G+P  +     AL GD  D +PG+PG+G KTAA L+  +G++  +L             
Sbjct: 187 YGVPAARYADFAALRGDPSDGLPGVPGVGEKTAARLVDRHGDIAGVLAALDDPDAGFAPG 246

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            R  +    +   ++  +V +  DVP+      L     +  RL+   +       + R+
Sbjct: 247 LRTKLTAARDYLAVAPTVVRVALDVPLPALPTDLPATPADPDRLLELAERWNLAGAVRRL 306


>gi|15841581|ref|NP_336618.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis CDC1551]
 gi|215403474|ref|ZP_03415655.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis 02_1987]
 gi|215411796|ref|ZP_03420588.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis 94_M4241A]
 gi|215446313|ref|ZP_03433065.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis T85]
 gi|218753812|ref|ZP_03532608.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis GM 1503]
 gi|254551123|ref|ZP_05141570.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187079|ref|ZP_05764553.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis CPHL_A]
 gi|294997034|ref|ZP_06802725.1| 5'-3' exonuclease [Mycobacterium tuberculosis 210]
 gi|297634671|ref|ZP_06952451.1| 5'-3' exonuclease [Mycobacterium tuberculosis KZN 4207]
 gi|297731659|ref|ZP_06960777.1| 5'-3' exonuclease [Mycobacterium tuberculosis KZN R506]
 gi|298525589|ref|ZP_07012998.1| 5'-3'-exonuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|306789229|ref|ZP_07427551.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu004]
 gi|313658994|ref|ZP_07815874.1| 5'-3' exonuclease [Mycobacterium tuberculosis KZN V2475]
 gi|13881829|gb|AAK46432.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis CDC1551]
 gi|298495383|gb|EFI30677.1| 5'-3'-exonuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|308334287|gb|EFP23138.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu004]
          Length = 318

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 2   RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 61

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 62  DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 118

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 119 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 176

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 177 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 236

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 237 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAEL 296

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 297 ATRFGVESSIARLQKALDT 315


>gi|237729762|ref|ZP_04560243.1| exonuclease IX [Citrobacter sp. 30_2]
 gi|226908368|gb|EEH94286.1| exonuclease IX [Citrobacter sp. 30_2]
          Length = 251

 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIVHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A    +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDEARNSGWRHQRLPDYKAGRPPMPDDLHQEMPALRAAFEQRGVCCWVSSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVSQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIEKEFGVLPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG K+A  LL ++  LE +  +   + +K  R+ + E+ E A 
Sbjct: 168 YWGLAGISSSKIPGVAGIGPKSATQLLAQFPTLEALYEHLDDVPEKW-RKKLEEHREMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|293394689|ref|ZP_06638981.1| exodeoxyribonuclease IX [Serratia odorifera DSM 4582]
 gi|291422815|gb|EFE96052.1| exodeoxyribonuclease IX [Serratia odorifera DSM 4582]
          Length = 252

 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 80/264 (30%), Positives = 132/264 (50%), Gaps = 21/264 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAVI 64
           L +VD  + I R                  A+ G    +     L+   + S  SH   +
Sbjct: 5   LLIVDALNLIRRIH----------------AVQGSPCVDACRHALRQLIQHSSPSHAVAV 48

Query: 65  FDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           FD    + ++R+++ PDYKA R  +PE L  ++P +R A +A G+      G EADD+ A
Sbjct: 49  FDEDDRSDSWRHQLLPDYKAGRSPMPENLQQEMPQLRQAFEALGVACWHSAGNEADDLAA 108

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T        G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ P+++   
Sbjct: 109 TLAVKVAAGGHQVTIVSTDKGYCQLLSPKVQIRDYFQKRWLDMPFVQQEFGVLPQQLADY 168

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L G     IPG+ GIG KTA  LLQ+ G+L+ +    + I +K  R  + ++ E A +
Sbjct: 169 WGLAGIGSSKIPGVAGIGPKTAVQLLQQAGSLDGVYQQLAAIPEKW-RSKLEQHREMAYV 227

Query: 243 SRKLVMLRTDVPITIPLEHLILED 266
            +++  LRTD+ +   L+ L L +
Sbjct: 228 CKQIATLRTDLQLNGNLQQLRLPE 251


>gi|218706294|ref|YP_002413813.1| exonuclease IX [Escherichia coli UMN026]
 gi|218433391|emb|CAR14293.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli UMN026]
          Length = 281

 Score =  234 bits (596), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 129/263 (49%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                V+A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRR----------------VHAVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRTAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|26249203|ref|NP_755243.1| exonuclease IX [Escherichia coli CFT073]
 gi|91212166|ref|YP_542152.1| exonuclease IX [Escherichia coli UTI89]
 gi|218559786|ref|YP_002392699.1| exonuclease IX [Escherichia coli S88]
 gi|237706571|ref|ZP_04537052.1| exonuclease IX [Escherichia sp. 3_2_53FAA]
 gi|26109610|gb|AAN81813.1|AE016765_215 Exodeoxyribonuclease IX [Escherichia coli CFT073]
 gi|91073740|gb|ABE08621.1| exodeoxyribonuclease IX [Escherichia coli UTI89]
 gi|218366555|emb|CAR04308.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli S88]
 gi|226899611|gb|EEH85870.1| exonuclease IX [Escherichia sp. 3_2_53FAA]
 gi|294491910|gb|ADE90666.1| exodeoxyribonuclease-9 [Escherichia coli IHE3034]
          Length = 281

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|167967041|ref|ZP_02549318.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis H37Ra]
 gi|17375479|sp|Q10699|EX53_MYCTU RecName: Full=5'-3' exonuclease
          Length = 318

 Score =  233 bits (595), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 142/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 2   RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 61

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 62  DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 118

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 119 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 176

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 177 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 236

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P +   L   +  R    
Sbjct: 237 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAEL 296

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 297 ATRFGVESSIARLQKALDT 315


>gi|284922736|emb|CBG35824.1| 5'-3' exonuclease [Escherichia coli 042]
          Length = 281

 Score =  233 bits (595), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD       +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRNSGWRHQRLPDYKAGRPPMPEELHDEMPALRTAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|251790755|ref|YP_003005476.1| 5'-3' exonuclease [Dickeya zeae Ech1591]
 gi|247539376|gb|ACT07997.1| 5'-3' exonuclease [Dickeya zeae Ech1591]
          Length = 253

 Score =  233 bits (595), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/262 (33%), Positives = 139/262 (53%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   +A   + L +L+Q+SR     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CLAACQHALNQLIQHSR----PTHAVAVF 49

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+++ P+YKA R  +PE L  +LP +R A  A G+ +    G EADD+ AT
Sbjct: 50  DDEQRDQSWRHQLLPEYKAGRAPMPENLSRELPQIREAFLASGVDSWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                  +G   TI+STDK   QL++PT  + D  ++  +D+  + +++G+ PE++    
Sbjct: 110 LASKVAAQGHQATIVSTDKGYCQLLAPTIRIRDYFQKRWLDVPFIQQEFGVQPEQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG KTAA LLQ+ G+LE +     +I +K RR  +    + A   
Sbjct: 170 GLAGISSSKIPGVSGIGPKTAAQLLQQAGSLEALYQQLEQIPEKWRR-KLESQQDMAYRC 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  L+TD+ +   L+ L L 
Sbjct: 229 RQVATLKTDLVLNGNLQQLRLP 250


>gi|218690921|ref|YP_002399133.1| exonuclease IX [Escherichia coli ED1a]
 gi|218428485|emb|CAR09411.2| exonuclease IX (5'-3' exonuclease) [Escherichia coli ED1a]
 gi|222034489|emb|CAP77231.1| exodeoxyribonuclease-9 [Escherichia coli LF82]
 gi|312947326|gb|ADR28153.1| exonuclease IX [Escherichia coli O83:H1 str. NRG 857C]
          Length = 281

 Score =  233 bits (595), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDMHIDGNLQQLRL 279


>gi|293363788|ref|ZP_06610529.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma alligatoris
           A21JP2]
 gi|292552654|gb|EFF41423.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma alligatoris
           A21JP2]
          Length = 292

 Score =  233 bits (595), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 88/300 (29%), Positives = 148/300 (49%), Gaps = 19/300 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           ++   L+DG+  ++++FYAT       + +   G+  N I  F   L+ LL + + +   
Sbjct: 2   KDKFLLIDGNLMLFQSFYATYNPNNSYVMQSQSGITTNGIYQFFRTLYNLLNSVKPK--- 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +  + FD    T R+ IYP+YKA R K PE++  Q    +       IP+ EI G EAD
Sbjct: 59  -YIFIAFDAKEKTNRHLIYPEYKAGRRKAPEIIFEQFHYTKELLSKLNIPSSEINGAEAD 117

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC--LYDTVKEE--KIDIEHVIKKWGI 174
           D+IAT + I   +     I S D+DL+QLV+        DT   +  KI  ++  +K+ I
Sbjct: 118 DLIATLSKI---QDVEKIIFSKDQDLLQLVNDDISILYRDTFSNQYSKITKDNFEEKYLI 174

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P ++   +A+ GD+ DN+PG+ GIG   A  LL+E+G  +NI  N  +      ++ ++
Sbjct: 175 KPNQIPDYKAINGDNSDNLPGVKGIGKIGAIKLLKEFGTWQNIYNNLDKHST-TVQKKLV 233

Query: 235 EYAETARLSRKLVMLRTDV-PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           E  E ++L   L  L  DV  + + LE+  L + N  +       L    ++ R+ +   
Sbjct: 234 ESQEMSKLCYDLAKLNYDVEELDLNLENYFL-NINYQQAKDLFLELGLENVLARLESIKW 292


>gi|215431016|ref|ZP_03428935.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis EAS054]
 gi|219558061|ref|ZP_03537137.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis T17]
 gi|260201202|ref|ZP_05768693.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis T46]
          Length = 318

 Score =  233 bits (595), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 2   RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 61

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 62  DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 118

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 119 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 176

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 177 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 236

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 237 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTADL 296

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 297 ATRFGVESSIARLQKALDT 315


>gi|260205380|ref|ZP_05772871.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis K85]
          Length = 318

 Score =  233 bits (595), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 143/319 (44%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L ++DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 2   RSPLVILDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 61

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 62  DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 118

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 119 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 176

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  
Sbjct: 177 PAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAA 236

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISF 275
           A   K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R    
Sbjct: 237 ADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAEL 296

Query: 276 LKALEFTKLINRVATTYDC 294
                    I R+    D 
Sbjct: 297 ATRFGVESSIARLQKALDT 315


>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
          Length = 1000

 Score =  233 bits (595), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 132/280 (47%), Gaps = 26/280 (9%)

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           LQN P       KIR+AF++ P   LI ADY Q+ELRILAH+A    +   F+   D H 
Sbjct: 718 LQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHS 777

Query: 780 MVAAEIFGVNIEKVSPQ--------------------------MRRHAKTINFSIIYGIS 813
             A  ++    + V  +                           RR AK +NFSI YG +
Sbjct: 778 RTAMNMYQHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKT 837

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
           P  LA   ++   EA D +K ++     +  +  K K   ++   V T+ GR   +  + 
Sbjct: 838 PVGLARDWKVSVKEAKDTLKLWYRDRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPNMA 897

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
              S  R   ERAAINAP+QGSAAD+   AM+ + ++    +L  ++LLQ+HDE++ E P
Sbjct: 898 HATSGQRGHIERAAINAPVQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILEGP 957

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            E    A  I+V  M K       L V L V+ K + NW 
Sbjct: 958 TESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNWY 997



 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 129/378 (34%), Gaps = 63/378 (16%)

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND-SYTKIVNT 374
           +ET +  D   +        + T+K   + +P K  + +  K ++  +        +V+ 
Sbjct: 205 VETSLQFDDKARDGYDGDEHECTAKNTVQDSPAKAPMSKESKDARKALATVYDKVLVVDN 264

Query: 375 KDIQQWVQKLETIGSASF----KIITDTMDAFHSKPIA----IAISTLDQKDDTSFKVET 426
               + V +L T    +F          +D     P++    I  S      D       
Sbjct: 265 VKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETPVSHGEVICFSIYSGNSDAE----- 319

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
              D     +          +++L     FFE+    K+ HN  +D  V+  YGI + GF
Sbjct: 320 --ADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENYGIKVAGF 377

Query: 487 E-DIMLMSYVLDSGRS---SHDIASIAQKW--LSYTRKEILKSRKSS------------- 527
             D M ++ + DS R     + +  +      +    KE+ K  K S             
Sbjct: 378 HADTMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKD 437

Query: 528 ------IPIDKISDSQVQE------HAIENSNVILQLWLLLRPKLIVEK----------L 565
                 I ++ +   Q  +      ++  +S   L+L+  L+ KL  +           +
Sbjct: 438 GSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSM 497

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS------GE 619
              YE   +P   ++ +ME  G+ +D+  L ++            +     +       +
Sbjct: 498 YDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAK 557

Query: 620 KFNLSSPKQLGDILFTKL 637
             N++S  Q+  + F  +
Sbjct: 558 YMNVNSDTQIRQLFFGGI 575


>gi|145347581|ref|XP_001418242.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578471|gb|ABO96535.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 233

 Score =  233 bits (595), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/238 (37%), Positives = 126/238 (52%), Gaps = 18/238 (7%)

Query: 7   LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           L LVDG SF++RA+Y      +        G   + +  + + +  LL     E   +H 
Sbjct: 1   LILVDGLSFVFRAYYGWNARGSGEGLTNSAGEDTSVLYSYAHTICSLL-----ELKPTHL 55

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           AV  D    TFR+E++ +YKANRP  PE LL  +P V    +  G+P + + G EADDII
Sbjct: 56  AVCMDAKGKTFRHEMFVEYKANRPPTPEPLLELIPKVEQLVRDMGVPLLRLSGVEADDII 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWG-- 173
            T +  A   GF V+I S DKD  QL+ P T +    K  K        ++         
Sbjct: 116 GTVSRRASDAGFRVSICSPDKDFYQLLGPKTKMLKPSKSSKGDPFDPFTVDDFRAMHNNV 175

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           I PE+ +   AL GDS DNIPG+ G+G KTA  LL++YG++E+ L NA+ +K K+ RE
Sbjct: 176 IEPEQFIDFLALVGDSADNIPGVEGVGPKTALALLEQYGDIESALANAANVKGKRARE 233


>gi|296128451|ref|YP_003635701.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
 gi|296020266|gb|ADG73502.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
          Length = 326

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 145/309 (46%), Gaps = 28/309 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RAF+  P   R  DG PVNA+ G   M+ +L+ + R   + + +   
Sbjct: 9   GRLLLLDSASLYFRAFFGVPDSVRAPDGTPVNAVRGLVEMIARLVADRRPTRLVACWD-- 66

Query: 65  FDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
            D     FR E  P YKA+R            ++PE L  Q+P++     A GIP +   
Sbjct: 67  -DDWRPAFRVEAVPSYKAHRVAREVPGTTGEEEVPEALTAQVPVIVEVLAALGIPRLGAP 125

Query: 114 GFEADDIIATYT----YIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEK----I 163
           G EADD+I T           E  AV +++ D+DL QLV       +   VK  K    +
Sbjct: 126 GHEADDVIGTLVAREAARPAAERAAVDVVTGDRDLFQLVDDAVPVRVLYPVKGVKDLLEV 185

Query: 164 DIEHVIKKWGIPPEK-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--- 219
           D   +++++G+P  +    +  L GD  D +PG+PGIG KTAA LL  YG LE +L    
Sbjct: 186 DQGVLVERYGVPTGRAYADMAVLRGDPSDGLPGVPGIGEKTAASLLARYGTLEGVLAARD 245

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
            A R     +R  + + A+   ++ ++V +  D P+    + L     +   L++  +  
Sbjct: 246 AADRGLTATQRTRLTDAADYLAVAPRVVTVAPDAPVADVDDRLPAVPADPDALVTLAERW 305

Query: 280 EFTKLINRV 288
             +  + R+
Sbjct: 306 GLSSSLRRI 314


>gi|332669054|ref|YP_004452062.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Cellulomonas fimi ATCC 484]
 gi|332338092|gb|AEE44675.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas fimi ATCC 484]
          Length = 318

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 147/313 (46%), Gaps = 28/313 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L L+D +S  +RAF+  P   +  DG PVNA+ G  +M+ +L+ + R   + + 
Sbjct: 1   MTAHGRLLLLDTASLYFRAFFGVPDSVKAPDGTPVNAVRGLLDMIARLVVDRRPTRLVAC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPA 109
           +    D     FR E  P YKA+R            ++P++L PQ+P++    +AFGI  
Sbjct: 61  WD---DDWRPAFRVEAIPSYKAHRVAVPVPGGSDVEEVPDLLTPQVPVIVEVLEAFGIAR 117

Query: 110 IEIQGFEADDIIATYTY--IAEKEGFA--VTIISTDKDLMQLVSP--TTCLYDTVKE--- 160
           +   GFEADD+I T      A   G    V +++ D+DL QLV       +  TV+    
Sbjct: 118 VGAPGFEADDVIGTLVAREKARPAGERAAVDVVTGDRDLFQLVDDEAHVRVLYTVRGIKD 177

Query: 161 -EKIDIEHVIKKWGIPPE-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
            E +D   + +++ +        +  L GD  D +PG+ GIG KTAA L+  YG+L+ IL
Sbjct: 178 LEVVDQARLAERYAVASGPAYADMAVLRGDPSDGLPGVAGIGEKTAATLVHRYGSLDGIL 237

Query: 219 INASRIKQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
                        +R  ++E A+   ++ ++V +  D P+    + L     +  RL++ 
Sbjct: 238 AARDTGDAGLTATQRRRLVEAADYLAVAPRVVTVAHDAPVADVDDALPRVAADPERLVAL 297

Query: 276 LKALEFTKLINRV 288
            +       + RV
Sbjct: 298 AERWGLASSVRRV 310


>gi|257056192|ref|YP_003134024.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Saccharomonospora viridis DSM 43017]
 gi|256586064|gb|ACU97197.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Saccharomonospora viridis DSM 43017]
          Length = 320

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 148/318 (46%), Gaps = 31/318 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +S  +R+F+A P      DG PVNA+ GF + + ++L + R   + +     +
Sbjct: 4   PLVLLDAASLYFRSFFALPESLTAPDGTPVNAVRGFADTVARVLTDRRPARLVACLDADW 63

Query: 66  DYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
                 FR    P YKA+R            ++P+ L PQ+P++    +A GI   E +G
Sbjct: 64  ---RPEFRVRALPSYKAHRVAESSEEGPDVEEVPDTLTPQVPIILELLEAVGIATAEAEG 120

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV----SPTTCLY---DTVKEEKIDIEH 167
           FEADD+I T    A +    V +++ D+DL QLV    SP + +Y      K E +    
Sbjct: 121 FEADDVIGTLA--AREAQLPVEVVTGDRDLFQLVRSEPSPVSVIYVGKGWAKAEVLGPAE 178

Query: 168 VIKKWGIPPE----KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           V  ++G+P E        +  L GD  D +PG+PGIG KTAA L+  +G+LE ++  A  
Sbjct: 179 VAARYGLPAEHAGAAYADMAMLRGDPSDGLPGVPGIGEKTAAKLVTRFGSLEALVAAARD 238

Query: 224 ---IKQKKRRENILEYAETARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKAL 279
                  + R  ++E ++    +  +V + TD P I +  +H+  E     R+    +  
Sbjct: 239 GHPDVPPRARTKLVESSDYLAAAPLVVRVATDAPVIGVDDDHVPHEPVAPERVAELAERY 298

Query: 280 EFTKLINRVATTYDCDAA 297
                + R+       + 
Sbjct: 299 NLGGSVTRLLAALSGQSG 316


>gi|297198471|ref|ZP_06915868.1| 5'-3' exonuclease [Streptomyces sviceus ATCC 29083]
 gi|297147105|gb|EDY61418.2| 5'-3' exonuclease [Streptomyces sviceus ATCC 29083]
          Length = 306

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 143/310 (46%), Gaps = 26/310 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RA++  P   +  DG PVNA+ G    + +L+++   + + +     
Sbjct: 3   GRLMLLDTASLYFRAYFGVPESVKAPDGTPVNAVRGLLEFIDRLVKDHHPDLLVACMDAD 62

Query: 65  FDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +      +R ++ P YKA+R            ++P+ L PQ+P++     A GI  + + 
Sbjct: 63  W---RPQWRVDLIPSYKAHRVAEEHESGPDEEEVPDTLSPQVPVIEAVLDALGIARVGVA 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEH 167
           G+EADD+I T+T  A      V I++ D+DL QLV       +   +K     +  D   
Sbjct: 120 GYEADDVIGTFTAQAT---GPVDIVTGDRDLYQLVDDERQVRVLYPLKGVGTLQLTDEAW 176

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           + +K+G+     V L  L GD  D +PG+PGIG KTAA LL ++G+L  I+      K K
Sbjct: 177 LREKYGVDGRGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDQFGDLAGIMAAVDDPKAK 236

Query: 228 ---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
               +R+ + E      ++ K+V +  DVP+      +     +   L    +       
Sbjct: 237 LTPSQRKRLDESRPYVAVAPKVVKVAGDVPLPRVDTAVPRTPRDPAALEKLAERWGLGGS 296

Query: 285 INRVATTYDC 294
           + R+  T   
Sbjct: 297 LQRLVATLGA 306


>gi|261342227|ref|ZP_05970085.1| exodeoxyribonuclease IX [Enterobacter cancerogenus ATCC 35316]
 gi|288315562|gb|EFC54500.1| exodeoxyribonuclease IX [Enterobacter cancerogenus ATCC 35316]
          Length = 252

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P        +     L+   + S  +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGTP------CKDTCLHALEQLIRHSEPTHAVAVF 49

Query: 66  DYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D  A    +R++  PDYKA R  +P+ L  ++P +R A +  G+P     G EADD+ AT
Sbjct: 50  DDEARNTGWRHQRLPDYKAGRAPMPDDLHAEMPAIRAAFEQRGVPCWGAYGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL++PT  + D  ++  +D   +  ++G+ P ++    
Sbjct: 110 LAVKVASAGHQATIVSTDKGYCQLLTPTIRIRDYFQKRWLDAPFIASEFGVSPAQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PG+ GIG K+AA LL ++ +LE I      + +K  R+ +  + E A + 
Sbjct: 170 GLAGISSSKVPGVAGIGPKSAAQLLTDFQHLEGIYARLDEVPEKW-RKKLEAHKEMAFIC 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  L+TD+ +   L+ L LE
Sbjct: 229 REIATLQTDLQLDGNLQQLRLE 250


>gi|154412700|ref|XP_001579382.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
 gi|121913588|gb|EAY18396.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
          Length = 709

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 130/447 (29%), Positives = 217/447 (48%), Gaps = 39/447 (8%)

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           E+ N+I +   L       +KL   Y+ ++   +  +  +     ++D + +K    +I 
Sbjct: 280 EDENIIDKTLELFEKFTKDDKLYKWYKDIEMRHLRFMGTIHQKSFKLDLENMKFERYKIE 339

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-----------KTKTGQWKT 652
             L  + + IY LSG KFN+ SP ++ ++LF K+K  S                    + 
Sbjct: 340 SELKEISDKIYGLSGCKFNILSPFEVSEVLFEKMKLKSNKFSAQTKTIDSRHKNIKHREF 399

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
              +   ++  ++PI++ I ++R LSK+ S +        +     +H +  + ST TGR
Sbjct: 400 APTNSLVLDDINHPIVELIKKFRSLSKLVSNWLSFDQK--SDSEGILHPWILVLSTATGR 457

Query: 713 LASLEPNLQNIPI-KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           ++S+ PNLQNIP    +    IR+ F+ P  K +IS DYSQ+ELRILAH++    L  + 
Sbjct: 458 ISSVFPNLQNIPSFNDEQSLNIRKFFLPPTKKTMISVDYSQLELRILAHLSDDKKLKDLC 517

Query: 772 E-NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
             +  DIH M+A  IF  N   V+  MR+ AKT  ++ IYG     ++    I       
Sbjct: 518 NVDQGDIHSMIAKMIFNKN--NVTEDMRKEAKTNIYATIYGKKVENMSGISVIDI----- 570

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
                   F GI  +I  T    +  G+++T  G+      I   K S +  +ER ++N 
Sbjct: 571 --------FQGIRSFITNTVIETQNKGFIKTFSGKYRFLPNIRCQKVSDKMRDERISVNT 622

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI-IVHSME 949
            IQG+AAD  + A+I+V   ++   L    ++QIHDE +FE  +EEI T S I ++H ++
Sbjct: 623 IIQGTAADFVKFALINV---IKQTNLI--PIIQIHDEWIFET-DEEIGTLSFIDLIHKIK 676

Query: 950 KA--CLPKINLRVPLKVNIKVSNNWQE 974
           K+  C  +  L V + V I    ++ E
Sbjct: 677 KSSECSYEFGLNVKIPVKISAGKSFGE 703


>gi|188494962|ref|ZP_03002232.1| exodeoxyribonuclease IX [Escherichia coli 53638]
 gi|188490161|gb|EDU65264.1| exodeoxyribonuclease IX [Escherichia coli 53638]
          Length = 281

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|307312773|ref|ZP_07592403.1| 5'-3' exonuclease, SAM-fold domain [Escherichia coli W]
 gi|306907208|gb|EFN37714.1| 5'-3' exonuclease, SAM-fold domain [Escherichia coli W]
 gi|315062079|gb|ADT76406.1| ssb-binding protein, misidentified as ExoIX [Escherichia coli W]
 gi|323377338|gb|ADX49606.1| 5'-3' exonuclease, SAM-fold domain protein [Escherichia coli KO11]
          Length = 281

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|74313370|ref|YP_311789.1| exonuclease IX [Shigella sonnei Ss046]
 gi|82545097|ref|YP_409044.1| exonuclease IX [Shigella boydii Sb227]
 gi|89109584|ref|AP_003364.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli str. K-12
           substr. W3110]
 gi|157158560|ref|YP_001464121.1| exonuclease IX [Escherichia coli E24377A]
 gi|157162252|ref|YP_001459570.1| exonuclease IX [Escherichia coli HS]
 gi|170082369|ref|YP_001731689.1| Ssb-binding protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187730847|ref|YP_001881461.1| exonuclease IX [Shigella boydii CDC 3083-94]
 gi|209920249|ref|YP_002294333.1| exonuclease IX [Escherichia coli SE11]
 gi|218555349|ref|YP_002388262.1| exonuclease IX [Escherichia coli IAI1]
 gi|218696397|ref|YP_002404064.1| exonuclease IX [Escherichia coli 55989]
 gi|238901936|ref|YP_002927732.1| Ssb-binding protein, misidentified as ExoIX [Escherichia coli
           BW2952]
 gi|253772350|ref|YP_003035181.1| exonuclease IX [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037852|ref|ZP_04871910.1| exonuclease IX [Escherichia sp. 1_1_43]
 gi|254162724|ref|YP_003045832.1| exonuclease IX [Escherichia coli B str. REL606]
 gi|260845444|ref|YP_003223222.1| exonuclease IX [Escherichia coli O103:H2 str. 12009]
 gi|293412146|ref|ZP_06654869.1| xni [Escherichia coli B354]
 gi|293449124|ref|ZP_06663545.1| xni [Escherichia coli B088]
 gi|331643485|ref|ZP_08344616.1| 5-3 exonuclease [Escherichia coli H736]
 gi|331678779|ref|ZP_08379453.1| 5-3 exonuclease [Escherichia coli H591]
 gi|332280532|ref|ZP_08392945.1| ssb-binding protein [Shigella sp. D9]
 gi|882693|gb|AAB40448.1| TTG start; ORF_o281 [Escherichia coli str. K-12 substr. MG1655]
 gi|73856847|gb|AAZ89554.1| 5'-3' exonuclease [Shigella sonnei Ss046]
 gi|81246508|gb|ABB67216.1| 5'->3' exonuclease [Shigella boydii Sb227]
 gi|85675617|dbj|BAE76870.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli str. K12
           substr. W3110]
 gi|157067932|gb|ABV07187.1| exodeoxyribonuclease-9 [Escherichia coli HS]
 gi|157080590|gb|ABV20298.1| exodeoxyribonuclease-9 [Escherichia coli E24377A]
 gi|169890204|gb|ACB03911.1| Ssb-binding protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187427839|gb|ACD07113.1| exodeoxyribonuclease-9 [Shigella boydii CDC 3083-94]
 gi|209913508|dbj|BAG78582.1| exonuclease IX [Escherichia coli SE11]
 gi|218353129|emb|CAU98971.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli 55989]
 gi|218362117|emb|CAQ99726.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli IAI1]
 gi|226839476|gb|EEH71497.1| exonuclease IX [Escherichia sp. 1_1_43]
 gi|238863574|gb|ACR65572.1| Ssb-binding protein, misidentified as ExoIX [Escherichia coli
           BW2952]
 gi|242378345|emb|CAQ33122.1| YgdG [Escherichia coli BL21(DE3)]
 gi|253323394|gb|ACT27996.1| 5'-3' exonuclease [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974625|gb|ACT40296.1| exonuclease IX [Escherichia coli B str. REL606]
 gi|253978790|gb|ACT44460.1| exonuclease IX [Escherichia coli BL21(DE3)]
 gi|257760591|dbj|BAI32088.1| exonuclease IX [Escherichia coli O103:H2 str. 12009]
 gi|291322214|gb|EFE61643.1| xni [Escherichia coli B088]
 gi|291468917|gb|EFF11408.1| xni [Escherichia coli B354]
 gi|309703156|emb|CBJ02490.1| 5'-3' exonuclease [Escherichia coli ETEC H10407]
 gi|315137405|dbj|BAJ44564.1| exonuclease IX [Escherichia coli DH1]
 gi|331036956|gb|EGI09180.1| 5-3 exonuclease [Escherichia coli H736]
 gi|331073609|gb|EGI44930.1| 5-3 exonuclease [Escherichia coli H591]
 gi|332102884|gb|EGJ06230.1| ssb-binding protein [Shigella sp. D9]
          Length = 281

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|205353914|ref|YP_002227715.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858237|ref|YP_002244888.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205273695|emb|CAR38688.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710040|emb|CAR34395.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629027|gb|EGE35370.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 271

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 24  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 67

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  GI      G EADD+ 
Sbjct: 68  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIRCWASDGNEADDLA 127

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 128 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 187

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 188 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAF 246

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 247 LCRDIARLQTDLHIDGNLQQLRL 269


>gi|301026235|ref|ZP_07189699.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 196-1]
 gi|299879784|gb|EFI87995.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 196-1]
          Length = 278

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 31  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 74

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 75  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 134

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 135 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 194

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 195 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 253

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 254 LCRDIARLQTDLHIDGNLQQLRL 276


>gi|15803320|ref|NP_289353.1| exonuclease IX [Escherichia coli O157:H7 EDL933]
 gi|82778177|ref|YP_404526.1| exonuclease IX [Shigella dysenteriae Sd197]
 gi|291284127|ref|YP_003500945.1| hypothetical protein G2583_3451 [Escherichia coli O55:H7 str.
           CB9615]
 gi|12517277|gb|AAG57912.1|AE005508_3 5'-3' exonuclease [Escherichia coli O157:H7 str. EDL933]
 gi|13363130|dbj|BAB37081.1| 5'-3' exonuclease [Escherichia coli O157:H7 str. Sakai]
 gi|81242325|gb|ABB63035.1| 5'-3' exonuclease [Shigella dysenteriae Sd197]
 gi|209761308|gb|ACI78966.1| 5'-3' exonuclease [Escherichia coli]
 gi|209761310|gb|ACI78967.1| 5'-3' exonuclease [Escherichia coli]
 gi|209761312|gb|ACI78968.1| 5'-3' exonuclease [Escherichia coli]
 gi|209761314|gb|ACI78969.1| 5'-3' exonuclease [Escherichia coli]
 gi|209761316|gb|ACI78970.1| 5'-3' exonuclease [Escherichia coli]
 gi|290764000|gb|ADD57961.1| Uncharacterized exonuclease xni [Escherichia coli O55:H7 str.
           CB9615]
          Length = 281

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|260869476|ref|YP_003235878.1| exonuclease IX [Escherichia coli O111:H- str. 11128]
 gi|257765832|dbj|BAI37327.1| exonuclease IX [Escherichia coli O111:H- str. 11128]
          Length = 281

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDTLNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|269849492|sp|B7LVW5|XNI_ESCF3 RecName: Full=Protein Xni
 gi|324111205|gb|EGC05188.1| 5'-3' exonuclease [Escherichia fergusonii B253]
 gi|325496159|gb|EGC94018.1| exonuclease IX [Escherichia fergusonii ECD227]
          Length = 251

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/264 (31%), Positives = 127/264 (48%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHVVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD       +R++  PDYKA RP +P+ L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRNSGWRHQRLPDYKAGRPPMPDELHNEMPTLRAAFEQRGVPCWSATGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLEMHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           L R +  L+TDV I   L+ L L+
Sbjct: 227 LCRDIARLQTDVHIDGNLQQLRLK 250


>gi|242240407|ref|YP_002988588.1| 5'-3' exonuclease [Dickeya dadantii Ech703]
 gi|242132464|gb|ACS86766.1| 5'-3' exonuclease [Dickeya dadantii Ech703]
          Length = 253

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/262 (32%), Positives = 135/262 (51%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   +A   + L +L+ +SR     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CVAACQHALKQLILHSR----PTHAVAVF 49

Query: 66  DYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    T  +R+E+ PDYKA RP +PE L  +LP ++ A    G+ +    G EADD+ AT
Sbjct: 50  DDEQRTQSWRHELLPDYKAGRPPMPENLRQELPQIKDAFLGLGVDSWRSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                  +G   TI+STDK   QL++PT  + D  ++  +D+  + +++G+ P  +    
Sbjct: 110 LASKVAAQGHQATIVSTDKGYCQLLAPTIQIRDYFQKRWLDVPFIRQEFGVEPGLLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG KTA  LL + G+L+ +     ++ +K RR  ++E  E A   
Sbjct: 170 GLAGISSSKIPGVSGIGPKTATSLLHQAGSLDALYQQLEQLPEKWRR-KLVEQQEMAYRC 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  L+ D+ +   L+ L L 
Sbjct: 229 RQVATLKIDLELNGNLQQLRLP 250


>gi|213421456|ref|ZP_03354522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 236

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 93/234 (39%), Positives = 143/234 (61%), Gaps = 5/234 (2%)

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            ML SY+L+S    HD+ S++ +WL +     ++I    K+ +  ++I+  +   +A E+
Sbjct: 1   TMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQIALEEAGRYAAED 60

Query: 546 SNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           ++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID  +L + S EI+ 
Sbjct: 61  ADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITL 120

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   T+ + LE++   D
Sbjct: 121 RLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELAL-D 179

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TGRL+S + 
Sbjct: 180 YPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDT 233


>gi|240172771|ref|ZP_04751430.1| 5'-3' exonuclease [Mycobacterium kansasii ATCC 12478]
          Length = 318

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 143/317 (45%), Gaps = 33/317 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +     + +
Sbjct: 4   PLLLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQHRPGRLVVCLDLDW 63

Query: 66  DYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 FR ++   YKA+R             ++P+ L PQ+ ++     A+GIP     
Sbjct: 64  ---RPQFRVDLISSYKAHRVAETEPEGRPDIEEVPDELTPQVDMIMELLDAYGIPTAGAP 120

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIE 166
           GFEADD+I T    A++    V ++S D+DL+Q+V+                K       
Sbjct: 121 GFEADDVIGTLA--AQERHDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLSKATLFGPA 178

Query: 167 HVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V +++G+P ++       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A 
Sbjct: 179 EVAERYGLPADRAGSAYAELALLRGDPSDGLPGVPGVGEKTAAALLAAHGSLDQIMSAAH 238

Query: 223 RIK---QKKRRENILEYAETARLSRKLVMLRTDVP--ITIPLEHLILEDCNGPRLISFLK 277
             K    K  R  +L  ++   ++  +V + TD P  ++ P + L L   +  R      
Sbjct: 239 DPKSGMAKGLRAKVLGASDYIEVAGSVVRVATDSPVQLSTPTDALPLVAADPARTAELAT 298

Query: 278 ALEFTKLINRVATTYDC 294
                  I R+    D 
Sbjct: 299 RYGVGSSITRLQKALDA 315


>gi|119493749|ref|ZP_01624319.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
 gi|119452494|gb|EAW33680.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
          Length = 874

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 128/551 (23%), Positives = 232/551 (42%), Gaps = 70/551 (12%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG-RSSHDIASI 508
           S L K  +    +K+  +    + +L++ G+ + G   D+ L   +L +G    + IASI
Sbjct: 33  SQLSKILQEPTTVKVFADAVVGQNLLNQNGLKVGGQIFDVKLADSLLTAGLEVDNSIASI 92

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           + + L     E       S+P D                 +L+L  +LR KL  E+L+ V
Sbjct: 93  SSRHLGKFSLE-------SLPQD-----------------LLKLRDVLRVKLASEELIEV 128

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK- 627
             +++       +QM   G+++D   LK    E+ +    LE  + D  GEK    + K 
Sbjct: 129 A-KIEFNATKATAQMSQNGVRLDTAWLKDKQQELEEERRGLESQVKDWLGEKLPDETDKI 187

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLE--------QINCGDNPIIKNILEWRQLSK 679
           QL D+  TK       KT+T +    A            Q    ++PI+      R ++ 
Sbjct: 188 QLSDLTSTK----KADKTQTLECFNRAGVPLESFNKNHIQSLTTEHPILNQFQRMRTVND 243

Query: 680 IK-STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           +  +     L N ++   + V+  +   S  TGR+++ +P +QNIP    L + I     
Sbjct: 244 LIGNKGIQGLLNVVDDENK-VYPTWHQNSAATGRMSATKPAIQNIPA--SLKRAIIPEQQ 300

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
               +  + ADYSQ ELRILA +     L   ++   D HR+ A+ + G    +++ + R
Sbjct: 301 GEEKQVFVRADYSQQELRILAQLTGDKTLTSAYQEGRDAHRLTASLMTGKPENQITSEER 360

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPR------SEAADYIKRYFHRFPGIHEYIEKTKNF 852
           + AK +NF  IYG SP  L +  ++         +A  +       +P +  + ++ +  
Sbjct: 361 QRAKPVNFGKIYGQSPQGLQSYAKVSYGVEFSIEDAMKFQAAMDKGYPSVARHEQQVRQD 420

Query: 853 VR------------QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            +            Q     T+ GR+  +          +      A+NAPIQGS AD++
Sbjct: 421 FKHQWNAALSSEDNQYPQTRTLLGRKREWQP-----QQHQYPPINEALNAPIQGSGADMS 475

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           + A+  +  +L++     K+ L  HD++V    E +     +I+   M K    +I   +
Sbjct: 476 KLALALLPDALQETG--AKITLIRHDKIVLTAQESQAEKVGKILESVM-KVAGLRITPDI 532

Query: 961 PLKVNIKVSNN 971
           P    + + +N
Sbjct: 533 PTVAEVSICDN 543


>gi|13508118|ref|NP_110067.1| 5'-3' exonuclease (complete) [Mycoplasma pneumoniae M129]
 gi|2494184|sp|P75403|EX53_MYCPN RecName: Full=5'-3' exonuclease
 gi|1674147|gb|AAB96106.1| 5'-3' exonuclease [Mycoplasma pneumoniae M129]
 gi|301633305|gb|ADK86859.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma pneumoniae FH]
          Length = 291

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 156/292 (53%), Gaps = 13/292 (4%)

Query: 8   FLVDGSSFIYRAFYAT--PLLSRKHDGLPVN-AIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L+DG+S  YRA++AT   +   K   LP N AI     M W LLQ+ + +    +  + 
Sbjct: 5   ILIDGNSLAYRAYFATWQQVEFAKLHNLPFNNAIRTMLMMCWNLLQSKQYD----YGVIS 60

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A TFR+++Y +YK+ R K P  LL Q+P+V+ + +  G    E  GFEADD+I +Y
Sbjct: 61  FDTKAPTFRDQLYSEYKSKRSKTPSELLVQIPVVKESLRHLGFLVCEQDGFEADDLIGSY 120

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK-WGIPPEKM 179
             +  +   AV I S+D+DL+QLV   T ++  VK     ++ + ++  ++ +G+ P+++
Sbjct: 121 ARLMTQNNVAVDIYSSDRDLLQLVDSMTSVWLCVKGTKEMKEYNTDNFAEQFFGLTPKQV 180

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           +  + L GD+ DN+ GI GIG K    LL++YG ++NI  N  ++  K  +  +    +T
Sbjct: 181 IEYKGLVGDNSDNLTGIKGIGPKKGIDLLKQYGTIDNIFANFDKL-SKALQTILQGQIDT 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           A+    L  ++TD+ +   + H  L+  +   L+  L       L  + +  
Sbjct: 240 AKKFSFLASIKTDIKLNDDIVHAALKPIDKQALLELLDKYGIKALAQKFSQL 291


>gi|37524661|ref|NP_928005.1| exonuclease IX [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81420304|sp|Q7N8Q9|XNI_PHOLL RecName: Full=Protein Xni
 gi|36784086|emb|CAE12955.1| Exodeoxyribonuclease IX (5'-3' exonuclease) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 252

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/261 (33%), Positives = 137/261 (52%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   I    + L +L+Q+S      +H   +F
Sbjct: 3   HLLIVDALNLIRRI-HAV-------QGSP--CIPACEHALRQLIQHSH----PTHAVAVF 48

Query: 66  DYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D       +R++I PDYKA R  +P+ L  ++P +R + +  G+     +G EADD+ AT
Sbjct: 49  DEENRNHSWRHQILPDYKAGRSPMPDNLQQEMPQIRASFEQQGVTCWHAKGHEADDLAAT 108

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ PE++    
Sbjct: 109 LAVKVTAAGHNVTIVSTDKGYCQLLSPNIRIRDYFQKRWLDMPFVQQEFGVLPEQLPDYW 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPGI GIG KTAA LLQ+ G L+N+  +  + + +K R  +    E A +S
Sbjct: 169 GLAGISSSKIPGIQGIGPKTAATLLQQAGTLDNLFQHLDQ-QPEKWRNKLESNQEIAFIS 227

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           R++  LRTD+ +   L+ L L
Sbjct: 228 REVASLRTDLALKGNLQQLRL 248


>gi|239932297|ref|ZP_04689250.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672]
          Length = 314

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 26/309 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+++ R   + +     
Sbjct: 11  GRLMLLDTASLYFRAYFGVPESVRAPDGTPVNAVRGLLDFIDRLVKDHRPGHLVACMDAD 70

Query: 65  FDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +      +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + ++
Sbjct: 71  W---RPQWRVELIPSYKAHRVAREQAAGPDEEEVPDTLSPQVPVIEAVLDALGIARVGVE 127

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEH 167
            +EADD+I T+T  AE     V I++ D+DL QLV       +   +K     +  D   
Sbjct: 128 RYEADDVIGTFTARAE---GPVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQVTDEAV 184

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           + +K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  IL      + K
Sbjct: 185 LREKYGVDGRGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGILAAVDDRQAK 244

Query: 228 ---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
               +R+ +        ++  +V +  DVP+      L     +   L S          
Sbjct: 245 LTPSQRKRLDGARPYLAVAPAVVRVADDVPLPDVDTVLPRAPRDPAALESLAARWGLGGS 304

Query: 285 INRVATTYD 293
           + R+ TT  
Sbjct: 305 LQRLLTTLS 313


>gi|41407923|ref|NP_960759.1| hypothetical protein MAP1825 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396277|gb|AAS04142.1| hypothetical protein MAP_1825 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 318

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 144/317 (45%), Gaps = 33/317 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S  +R+++  P      DG PVNA+ GF + L  ++   R   +     + +
Sbjct: 4   PLVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFLDSLAVVITQQRPSRLVVCLDLDW 63

Query: 66  DYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                 FR ++ P YKA+R             ++P+ L PQ+ ++    +A+GIP    +
Sbjct: 64  ---RPQFRVDLVPSYKAHRVPEAEPAGEPDVEEVPDDLTPQIDMIAELLEAYGIPTAGAE 120

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIE 166
           GFEADD++ T    A +    V ++S D+DL+Q+VS                K       
Sbjct: 121 GFEADDVLGTLA--ARERDDPVVVVSGDRDLLQVVSDDPVPVRVLYLGRGLSKATLFGPV 178

Query: 167 HVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V + +G+P ++       L  L GD  D +PG+PG+G KTAA LL ++G+LE +L  A 
Sbjct: 179 EVAEHYGVPVDRAGPAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLERVLAAAH 238

Query: 223 RIK---QKKRRENILEYAETARLSRKLVMLRTDVP--ITIPLEHLILEDCNGPRLISFLK 277
             K    K  R  +L   +    +  +V + TD P  ++ P + + L   +  R      
Sbjct: 239 DPKSKMAKGLRAKLLGALDYIEAAGAVVRVATDAPVKLSTPSDAVPLVAADPHRTAELAT 298

Query: 278 ALEFTKLINRVATTYDC 294
            L     I R+    D 
Sbjct: 299 ELGVGSSIARLQKALDA 315


>gi|110642939|ref|YP_670669.1| exonuclease IX [Escherichia coli 536]
 gi|191171306|ref|ZP_03032856.1| exodeoxyribonuclease-9 [Escherichia coli F11]
 gi|300976433|ref|ZP_07173418.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 200-1]
 gi|269849729|sp|Q0TE61|XNI_ECOL5 RecName: Full=Protein Xni
 gi|110344531|gb|ABG70768.1| exodeoxyribonuclease IX [Escherichia coli 536]
 gi|190908606|gb|EDV68195.1| exodeoxyribonuclease-9 [Escherichia coli F11]
 gi|300308514|gb|EFJ63034.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 200-1]
 gi|320194939|gb|EFW69568.1| DNA polymerase I [Escherichia coli WV_060327]
 gi|324015362|gb|EGB84581.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 60-1]
          Length = 251

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLENHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|238810016|dbj|BAH69806.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 300

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/276 (33%), Positives = 139/276 (50%), Gaps = 21/276 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M K+N   L+DG+  ++ +FYA         + R   GL  N +  F   L KL+   + 
Sbjct: 7   MNKDN-FLLIDGNYLLFSSFYASYNPDRLENIMRSPQGLTTNGVHVFLMTLSKLIAYFKP 65

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    +  + FD    T R++I+ DYKA R K PE++  Q  L++       I   E  G
Sbjct: 66  K----YLFIAFDAYGETRRHKIFKDYKAGRTKAPEIIFEQFSLIKEILTKLNIKWFEQVG 121

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHV 168
            EADD+IAT    A+ +     I S DKDL+QLV+  T +   VKE      E  DI + 
Sbjct: 122 DEADDLIATL---AQNQDCNNLIFSKDKDLLQLVNLNTSVIKVVKENFKVSYELEDINNF 178

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
               GI P ++V  + L GDS DN+ GI GIG+K A  L+Q + ++EN+  N  +IK K 
Sbjct: 179 ETIHGIKPSQVVDYKGLAGDSSDNLRGINGIGHKGAIKLIQTFDSIENMYQNIDQIKGKT 238

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
            +E +L+  + A L + L  L  +V +   +   +L
Sbjct: 239 -KEKLLDEKDQAFLCKALAKLNLNVDMNKNISDYLL 273


>gi|254392836|ref|ZP_05008006.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|197706493|gb|EDY52305.1| 5'-3' exonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 301

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 26/305 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   R  DG PVNA+ G    + +L+Q+ R + + + +   +  
Sbjct: 1   MLLDTASLYFRAYFGVPDTVRAPDGTPVNAVRGLLEFIGRLVQDHRPDDLVACWDNDW-- 58

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            + P+ L PQ+P++    +A GI  +   G+E
Sbjct: 59  -RPHWRVELIPSYKAHRVAVETEAGPDEEEAPDTLTPQVPVIAEVLEALGIARVGADGYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIK 170
           ADD+I T T  A      V I++ D+DL QLV       +   +K     +  D   + +
Sbjct: 118 ADDVIGTLTARAT---GPVDIVTGDRDLFQLVDDARGRRVLYPLKGVGTLQTTDEGWLRE 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---K 227
           ++G+       L  L GD  D +PG+PGIG KTAA LL  +G+L  I+            
Sbjct: 175 RYGVDGPGYADLALLRGDPSDGLPGVPGIGEKTAAKLLDAFGDLAGIMAAVDDPASRLTP 234

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +R  + E      ++ K+V + TD P+      L     +   L +  +       + R
Sbjct: 235 AQRRRLDEARGYVAVAPKVVRVATDAPLPPFDPALPSAPRDPAALAALGERWGLGGALQR 294

Query: 288 VATTY 292
           + TT 
Sbjct: 295 LLTTL 299


>gi|66391259|ref|YP_238608.1| ORF004 [Staphylococcus phage Twort]
 gi|62637189|gb|AAX92300.1| ORF004 [Staphylococcus phage Twort]
          Length = 1067

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 115/558 (20%), Positives = 229/558 (41%), Gaps = 89/558 (15%)

Query: 494  YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
            YVLD+  +      +  K+ +  +  I     +S   D I    +  +A  +++   +++
Sbjct: 452  YVLDTAIN------LINKYKNV-KDVINDVDGNSFNYDWIPLELMHPYASGDTDACRRIY 504

Query: 554  LLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
              +  KL  +   K L +  +    +   +++++  G+  D + L  +  + S  L  +E
Sbjct: 505  CDVINKLKEQNRPKALELLTKSYPRLTRTLARIQSNGMYTDTEYLYMIDDKYSNELDKIE 564

Query: 611  ENI-------------YDL-----------------------------SGEKFNLSSPKQ 628
            + +             YDL                              G KF  SS   
Sbjct: 565  QKLRSHWVIKEFEDTRYDLYMAGVEEFESNPPKERNKSITQYRDKFKNGGWKFKPSSGAH 624

Query: 629  LGDILFTKLKFPSG-------AKTKTGQWKTTAQDLEQINCGDNPI-------------- 667
             G++LF+ L             K  T   K      E      + I              
Sbjct: 625  KGEVLFSILGISLPYEKEFVKDKPFTKGVKEDKLTWEDYKTNKSTIDYIIDNIELKKDCI 684

Query: 668  --IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
              +  + ++ +L   ++++   LPN +NK T  +H  ++   T + RL+S  PNLQ +P 
Sbjct: 685  DVVVLMKKYAELQTKRNSFTKKLPNLVNKETSTLHGNFNSTGTASARLSSSAPNLQQLPS 744

Query: 726  KT------DLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
             T      D    ++RAF S      +   D+S IE++I+    K   + + F    DIH
Sbjct: 745  HTSDVNKFDYHYPVKRAFKSRYKNGIMTELDFSAIEMKIIGLYTKDPEMLESFLKGEDIH 804

Query: 779  RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            +  A+ ++   +E ++ + R++ K +NF I YG SPF  + +  +   EA +   +YF+ 
Sbjct: 805  KSTASIVYNKPVEDITAEERQNTKKVNFGIAYGESPFSFSGKNNMTVEEAEEIFNKYFNT 864

Query: 839  FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
             P +   I+ T +FV+++GYVE + G +    +  S     RN   R + N  IQ +A  
Sbjct: 865  KPSVKNSIDATHDFVQKHGYVEAMQGHQRFIRDAQSSDKKKRNQALRQSFNTIIQSTAGY 924

Query: 899  ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            +T  A+  +   ++ + + +K++  +HD ++ +   ++I    ++  H ME      + +
Sbjct: 925  LTNMALTFIDDFIQQNNIKSKIVATVHDSILIDTHPDDIFIIGKVSKHIMENLPYDFLFM 984

Query: 959  -------RVPLKVNIKVS 969
                   R P++ + ++ 
Sbjct: 985  NHNGSSIRYPIEADFEIG 1002



 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/297 (12%), Positives = 102/297 (34%), Gaps = 31/297 (10%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
           +   D     +  + + +      N+           ++ ++   +  + +G+  + +I 
Sbjct: 75  IKYNDVKQSEVKPYYERMNNIITENKYDIIIPLGKLGVKYLLNVSSIGKVRGVPTKVDI- 133

Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL------QKLSQYPINNDSYTKIVNTK 375
              T +T    + S + + +N       +    L           +      Y  + N +
Sbjct: 134 --GTHQTWVLPTYSIEYTNVNKNAERHVVADLELVGKFVKNGEDAFTPKEVDYELVTNIE 191

Query: 376 DIQQWVQKLETIGS------ASFKIITDTMDAFH--SKPIAIAISTLDQKDDTSFKVETI 427
            +++   K     +       ++ + T+++      SKP+ +++S  + +  T       
Sbjct: 192 RVREIFNKEVKNDNNDGVDITAWDLETNSLSPEKKGSKPLVLSMSWKNGQGVT------- 244

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH--RYGISMRG 485
            I L         G+  +  EIL+ LK++  ++  +K+ HN +YD   L   +       
Sbjct: 245 -IPLYKSDFTWENGQQDI-DEILAMLKEWVASKEDIKVAHNGQYDINFLMSSQNFTEFNE 302

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
            +D  +  Y+  +   +  +       +SY   ++    K      K     + ++ 
Sbjct: 303 HQDTKVGWYLAVTQEEAESLK---LSDISYEVTDMGGYDKPLENFKKWFIQDLLKYL 356


>gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 180

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/177 (48%), Positives = 123/177 (69%)

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IPI+ + G++IR+AFI+    K+++ADYSQIELRI+AH+A    +   F    DIHR  A
Sbjct: 1   IPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATA 60

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
           AEIFG+ +++V+ + RR AK INF +IYG+S F L+ QL I R++A  Y++RYF R+P +
Sbjct: 61  AEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAV 120

Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            +++   +    + GYVET+FGRR++  EI S  +  R   ER AINAP+QG+AADI
Sbjct: 121 QQFMTGIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADI 177


>gi|290473644|ref|YP_003466516.1| exonuclease IX, 5'-3' exonuclease [Xenorhabdus bovienii SS-2004]
 gi|289172949|emb|CBJ79720.1| exonuclease IX, 5'-3' exonuclease [Xenorhabdus bovienii SS-2004]
          Length = 251

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 135/261 (51%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A                      L +L+ +    S  +H   +F
Sbjct: 3   HLLIVDALNLIRRI-HAVQGSPCAPACEH---------ALKQLITH----SSPTHAVAVF 48

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+++ PDYKA R  +P+ L  ++PL++ A  A G+     +G EADD+ AT
Sbjct: 49  DEDDRGHSWRHQLLPDYKAGRSAMPDDLQQEMPLIKQAFNALGVACWHAEGHEADDLAAT 108

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  ++  +D+  V +++G+ P ++    
Sbjct: 109 LATKVTSTGHRVTIVSTDKGYCQLLSPTIQIRDYFQKRWLDLPFVEREFGVSPAQLPDYW 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L+G S   IPG+ GIG KTAA+LLQ+ G+L+N+       +  K R  +  + E A +S
Sbjct: 169 GLSGISSSKIPGVQGIGPKTAAILLQQAGSLDNLFQYL-EAQPDKWRNKLATHKEMAYIS 227

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           R++  LRTD+ +   L+ L L
Sbjct: 228 REVASLRTDLSLNGNLQQLRL 248


>gi|50119958|ref|YP_049125.1| exonuclease IX [Pectobacterium atrosepticum SCRI1043]
 gi|81645952|sp|Q6D8F6|XNI_ERWCT RecName: Full=Protein Xni
 gi|49610484|emb|CAG73929.1| exodeoxyribonuclease IX [Pectobacterium atrosepticum SCRI1043]
          Length = 260

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 138/262 (52%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   I    + L +L+QNS+     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CITACQHALHQLIQNSQ----PTHAVAVF 49

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+++ PDYKA R  +P+ L  +LP ++ A  A G+ +    G EADD+ AT
Sbjct: 50  DDEDRDTSWRHQLLPDYKAGRTPMPDNLKQELPQIKTAFAAVGVESWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TIISTDK   QL++P   + D  ++  +D+  + +++ + P+++    
Sbjct: 110 LATKLSSAGHQATIISTDKGYCQLLAPHIQIRDYFQKRWLDLPFIEQEFSVSPQQLTDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG K+AA LLQ+ GNLE +      + +K  R+ + ++ E A +S
Sbjct: 170 GLAGISSSKIPGVAGIGPKSAAQLLQQAGNLEALYQQLDAVPEKW-RKKLEQHKEMALIS 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  LRTD+ +   L+ L L 
Sbjct: 229 RQVATLRTDLTLNGNLQQLRLP 250


>gi|16761750|ref|NP_457367.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143234|ref|NP_806576.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|25512792|pir||AF0862 5'-3' exonuclease [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504052|emb|CAD02798.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138867|gb|AAO70436.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 271

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 24  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 67

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 68  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 127

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 128 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 187

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 188 YWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAF 246

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 247 LCRDIARLQTDLHIDGNLQQLRL 269


>gi|260856908|ref|YP_003230799.1| exonuclease IX [Escherichia coli O26:H11 str. 11368]
 gi|257755557|dbj|BAI27059.1| exonuclease IX [Escherichia coli O26:H11 str. 11368]
          Length = 281

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++GI P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGIQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|157148338|ref|YP_001455657.1| exonuclease IX [Citrobacter koseri ATCC BAA-895]
 gi|166918961|sp|A8AP08|XNI_CITK8 RecName: Full=Protein Xni
 gi|157085543|gb|ABV15221.1| hypothetical protein CKO_04156 [Citrobacter koseri ATCC BAA-895]
          Length = 251

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L+     S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCAETCLHALEQLIVHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A    +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARNSGWRHQRLPDYKAGRPPMPDELHNEMPAIRAAFEQRGVQCWVSSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIEKEFGVLPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++  LE I  +   + +K  +  +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVQFQTLEGIYAHLDEVAEKWCK-KLEAHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|261749394|ref|YP_003257079.1| DNA polymerase I [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497486|gb|ACX83936.1| DNA polymerase I [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 305

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 153/308 (49%), Gaps = 18/308 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M  +  LFL+D  + +Y+ +YA    PL +    G+  + I  F   L   L   +    
Sbjct: 1   MNNK-KLFLIDTYTILYQGYYAYIKNPLFT--SQGINTSPIIHFTYFLINTLNEEK---- 53

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPA-IEIQGFE 116
            S+ A  FD    TFR + YP YKA+R K P  +   +P V    ++F I +     G+E
Sbjct: 54  PSYMAAFFDTSRKTFRKKEYPKYKAHRKKTPRDISIAMPYVVNILKSFRISSFYAKDGYE 113

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKW 172
           ADD+I T    AEK+G+ + II+ DKD  QLV+    +Y        ++ + IE + KK+
Sbjct: 114 ADDLIGTIAKKAEKKGYMIYIITLDKDFSQLVTKNIQIYRPPFKGNPKKILGIEEIKKKF 173

Query: 173 GI-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           G+  P++++ L ++ GDS DNIPG+PGIG K A   +Q+YG+LE  L +   +  K ++ 
Sbjct: 174 GVIEPKQVIDLWSMMGDSSDNIPGLPGIGEKYARKFIQKYGSLEKFLNSTHDLSGKIKKN 233

Query: 232 NILEYAETARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
                     LS++LV + T+VP      E   ++  N   +      LEF +L+ +   
Sbjct: 234 IEKNKK-LGLLSKRLVTIVTNVPFFYFQEEKFSVKKPNWNSIKKIFCELEFQRLLKKTYQ 292

Query: 291 TYDCDAAN 298
               +  N
Sbjct: 293 YKKKEWEN 300


>gi|323188784|gb|EFZ74069.1| exonuclease xni [Escherichia coli RN587/1]
          Length = 251

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD       +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRNSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus]
          Length = 1473

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 159/378 (42%), Gaps = 29/378 (7%)

Query: 624  SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
             SP    D+L      P     K G          +       +   +     +  + S 
Sbjct: 1098 GSPAVSMDVLNHLAGNPHEDPPKYGAAYGHFGGGLEGKEACEALYA-LCNMGSVDTMVSN 1156

Query: 684  YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
            +   L   +++++ RVH   +L +T TGRL++ +PNLQN P       KIR AF +    
Sbjct: 1157 FLQPLQELVDEKS-RVHCSLNL-NTETGRLSARKPNLQNQPALEKDQYKIRAAFRAEEGN 1214

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP-------- 795
             L+ ADY Q+ELR+LAHI     +   F+     H   A  +F    E V          
Sbjct: 1215 TLVVADYGQLELRLLAHITDCKSMITAFKEGGCFHSRTAVGMFDHVKEAVDKGEVLLEWD 1274

Query: 796  ----------------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
                              RR AKT+NFSI YG +   L     +   EA D +K ++   
Sbjct: 1275 YSKGEPPKPLVKDVFASERRQAKTLNFSIAYGKTGHGLFKDWGVTLKEAEDLVKAWYADR 1334

Query: 840  PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            P +  + ++     +  G+  T+ GR     +I S          RAAIN PIQG AAD+
Sbjct: 1335 PEVKRWQKQVIQNAKDTGFSRTLMGRYRKLPDITSNDRGKVGHGTRAAINTPIQGGAADV 1394

Query: 900  TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI--N 957
               AMI + +S    KL  K+LLQ+HDE++ E PEE    A    V  M++         
Sbjct: 1395 AMVAMIGIVRSPLLKKLGWKLLLQVHDEVILEGPEESAKEALAETVRCMQQPWDGIGLRE 1454

Query: 958  LRVPLKVNIKVSNNWQEE 975
            LRV L V+ K +  W + 
Sbjct: 1455 LRVDLLVDAKSAKTWYDA 1472



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 123/371 (33%), Gaps = 71/371 (19%)

Query: 352 LERLQKLSQYPINNDSYT--KIVNTKDIQQWVQKLETIGSASF---KIITDTMDAFHSKP 406
           +ERL   S      D     +IV  ++  + V K+      +F         ++     P
Sbjct: 606 IERLPLPSMPKTVEDKVEGVQIVAGREKARKVVKILMDNPDAFYACDTEVSEINLKDHGP 665

Query: 407 IA------IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
           +       I+I      D      + +++D                   L     FF +E
Sbjct: 666 VGHGRVTCISIYGGPDLDFGEGPGKILWVD-----------NLGAAAGTLEEFLPFFASE 714

Query: 461 HFLKIGHNIKYDKLVLHR-------YGISMRGFE-DIMLMSYVLD------SGRSSHDIA 506
              K+ HN  +D+ V+           I   GF  D M M+ + D      +G +   + 
Sbjct: 715 KHKKVWHNYGFDRHVMFNSPDNREEQRIDCVGFAGDTMHMARLWDTSMEKYAGDTGFSLE 774

Query: 507 SIAQKWLSY-----TRKEILKSRKSSI-----------PIDKISD-----SQVQEHAIEN 545
           +++ K L         KE+    K              PID+I        +  E++  +
Sbjct: 775 ALSLKLLGEGQRKTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRPRFIEYSAYD 834

Query: 546 SNVILQLWLLLRPKLIVEK------LLHVYERLDKPMIDVVSQMEITGIQID-QDLLKQV 598
           +     +   L  KL          +L  YE    P  ++++ ME TGI ++ +D L+ +
Sbjct: 835 AQATWLVHRELMQKLREMSWKDGMTMLDFYEMYYVPFGELLTDMERTGIYVEAKDYLQDI 894

Query: 599 SAEISKNLLSLEENIYDL------SGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWK 651
             +   +    EE   +         E  N SS  Q+  +LF     P    K    +  
Sbjct: 895 EVQARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLFGGATNPKTKEKLPVRRVF 954

Query: 652 TTAQDLEQINC 662
              +D  ++  
Sbjct: 955 KIERDPAELEA 965


>gi|254775082|ref|ZP_05216598.1| hypothetical protein MaviaA2_10471 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 318

 Score =  231 bits (590), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 144/319 (45%), Gaps = 33/319 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+++  P      DG PVNA+ GF + L  ++   R   +     +
Sbjct: 2   RSPLVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFLDSLAVVITQQRPSRLVVCLDL 61

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++    +A+GIP   
Sbjct: 62  DW---RPQFRVDLVPSYKAHRVAEAEPAGEPDVEEVPDDLTPQIDIIAELLEAYGIPTAG 118

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
            +GFEADD++ T    A +    V ++S D+DL+Q+VS                K     
Sbjct: 119 AEGFEADDVLGTLA--ARERDDPVVVVSGDRDLLQVVSDDPVPVRVLYLGRGLSKATLFG 176

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V + +G+P ++       L  L GD  D +PG+PG+G KTAA LL ++G+L  +L  
Sbjct: 177 PVEVAEHYGVPVDRAGPAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLHRVLAA 236

Query: 221 ASRIKQKK---RRENILEYAETARLSRKLVMLRTDVP--ITIPLEHLILEDCNGPRLISF 275
           A   K K     R  +L   +    +  +V + TD P  ++ P + + L   +  R    
Sbjct: 237 AHDPKSKTAKGLRTKLLGALDYIEAAGAVVRVATDAPVKLSTPSDAVPLVAADPQRTAEL 296

Query: 276 LKALEFTKLINRVATTYDC 294
              L     I R+    D 
Sbjct: 297 ATELGVGSSIARLQKALDA 315


>gi|24114083|ref|NP_708593.1| exonuclease IX [Shigella flexneri 2a str. 301]
 gi|30064144|ref|NP_838315.1| exonuclease IX [Shigella flexneri 2a str. 2457T]
 gi|110806739|ref|YP_690259.1| exonuclease IX [Shigella flexneri 5 str. 8401]
 gi|24053213|gb|AAN44300.1| 5-3 exonuclease [Shigella flexneri 2a str. 301]
 gi|30042400|gb|AAP18125.1| 5-3 exonuclease [Shigella flexneri 2a str. 2457T]
 gi|110616287|gb|ABF04954.1| 5'-3' exonuclease [Shigella flexneri 5 str. 8401]
 gi|281602158|gb|ADA75142.1| putative exonuclease xni [Shigella flexneri 2002017]
          Length = 281

 Score =  231 bits (590), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 128/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA+RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKADRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|323356520|ref|YP_004222916.1| 5'-3' exonuclease [Microbacterium testaceum StLB037]
 gi|323272891|dbj|BAJ73036.1| 5'-3' exonuclease [Microbacterium testaceum StLB037]
          Length = 309

 Score =  231 bits (590), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 138/306 (45%), Gaps = 26/306 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            +   L L+D +S  +RAFY  P   R  DG  VNA+ G  +M+ KL+       + + +
Sbjct: 3   SRPEKLLLLDTASLYFRAFYGVPDKVRAADGTSVNAVRGLLDMIAKLVSTYGPTRVVACW 62

Query: 62  AVIFDYPAVTFRNEIYPDYKAN-----------RPKIPEMLLPQLPLVRLATQAFGIPAI 110
               D     +R E+ P YKA+           R + P+ LL Q+PL+R A    GIP +
Sbjct: 63  D---DDWRPAWRVELLPSYKAHRVVEAVSTGPDREETPDPLLAQIPLIREALAVLGIPVV 119

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKID 164
                EADD+I T    A      V I++ D+DL QL+       +  T +     E +D
Sbjct: 120 GAAEHEADDVIGTLATAA---DVPVDIVTGDRDLFQLIDDDHHVRIVYTARGMSNLELVD 176

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
              V+ K+GI   +      L GD  D +PG+ GIG K+AA LL  +G+L+ IL  A   
Sbjct: 177 DAVVVSKYGIHAAQYADFAVLRGDPSDGLPGVAGIGEKSAAALLTAHGDLDGILTAAEAG 236

Query: 225 KQKK--RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG-PRLISFLKALEF 281
                 +R  IL  A+   ++  +V +  D+ + +P + L   D +      +  +    
Sbjct: 237 TGGTPAQRAKILAAADYLAVAPTVVRVVRDLDLDVPDDELHPLDDHRLAAANALAEKWNL 296

Query: 282 TKLINR 287
              + R
Sbjct: 297 GSSMTR 302


>gi|157376443|ref|YP_001475043.1| exonuclease IX [Shewanella sediminis HAW-EB3]
 gi|189030098|sp|A8FYJ2|XNI_SHESH RecName: Full=Protein Xni
 gi|157318817|gb|ABV37915.1| 5'-3' exonuclease [Shewanella sediminis HAW-EB3]
          Length = 255

 Score =  231 bits (590), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 11/265 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R   A P      +GL +       +   KL++  +     +H AV+
Sbjct: 2   NTFLIIDGMNLVRRMHAAQPNE-NDVNGLDI----RVGSACKKLVKYHQ----PTHVAVV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R  ++ DYK  R  +PE L   LP ++      G+ +I+    EADD+IAT 
Sbjct: 53  WDGDDISWRKHLFEDYKKGRKPMPEALSNTLPALKSYLAEQGVNSIDA-ASEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                  G    I+STDK   QL  P    +D   +  + IE   +K G+   + +   A
Sbjct: 112 ASKLVANGGKAIIVSTDKGFTQLSDPYIQRWDHFNQHYMTIEEREEKLGVEHSQFIDYLA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPG+PGIG K+A  LL+ + +L NI  +  +I   K+ + +    + ARLS 
Sbjct: 172 LAGDSGNKIPGVPGIGPKSAIELLRTFRSLANIYASLDKI-GAKQAKKLEAGKQMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDCNG 269
           KLV L+TD+P+ I L    L + N 
Sbjct: 231 KLVQLQTDIPLNINLSQFRLPNPNA 255


>gi|313637962|gb|EFS03268.1| DNA polymerase I [Listeria seeligeri FSL S4-171]
          Length = 190

 Score =  231 bits (590), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 79/194 (40%), Positives = 106/194 (54%), Gaps = 9/194 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHATFKGYKGGRQKTPSELSEQFPFIRELLAAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T  AE +G  V II+ D+DL QL S  T +Y T K     E    E + +K+ + P +++
Sbjct: 117 TKKAEADGLEVAIITGDRDLTQLASDKTTVYITKKGIADMETNTPETLKEKYDLTPAQII 176

Query: 181 CLQALTGDSIDNIP 194
            ++ L GDS DNIP
Sbjct: 177 DMKGLMGDSSDNIP 190


>gi|16766277|ref|NP_461892.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16421523|gb|AAL21851.1| exonuclease IX, 5'-3' exonuclease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261248108|emb|CBG25943.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995111|gb|ACY89996.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159532|emb|CBW19051.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|323131329|gb|ADX18759.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332989842|gb|AEF08825.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 271

 Score =  231 bits (590), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 24  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 67

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 68  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 127

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 128 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 187

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 188 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAF 246

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 247 LCRDIARLQTDLHIDGNLQQLRL 269


>gi|302818496|ref|XP_002990921.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
 gi|300141252|gb|EFJ07965.1| hypothetical protein SELMODRAFT_44782 [Selaginella moellendorffii]
          Length = 363

 Score =  231 bits (590), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 154/333 (46%), Gaps = 62/333 (18%)

Query: 3   KENHLFLVDGSSFIYRAFYA---------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR 53
            +  + LVDGS+ I+RA+Y           P L  + D +    +      +  LL    
Sbjct: 12  SKGRILLVDGSAVIFRAYYKVMAKAHHNLIPELESEADWVLT--VFTAFTTILGLL---- 65

Query: 54  KESIASHFAVIFDYPAV-----------------TFRNEIYPDYKANRPKIPEMLLPQLP 96
            +   SHFAV+FD+                    TFR+ ++P+YK NRP  P+ +   L 
Sbjct: 66  -DLSPSHFAVVFDHKGGFADEQRCKTCVFIFTGLTFRHTMFPEYKKNRPPTPDTIYQGLD 124

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
            +R A  A GI  IE+ G EADD+IAT    A      V I+S DKD  Q++SP   L  
Sbjct: 125 HLRPALVAMGIKVIEVPGVEADDVIATLAVSAATSEMKVRIVSPDKDFFQILSPDIRLLR 184

Query: 157 TVKEEK----IDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIP----------------- 194
            V +        +E    ++G + P + V + +L GD+ DNIP                 
Sbjct: 185 FVPKGAGMVSFGMEEFSARFGSLEPAQFVDVLSLIGDTCDNIPGKYYHTIDSRLRSITCN 244

Query: 195 --GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTD 252
             GIPGIG KTA  L+ ++G++EN+L    ++  K+  + +L     A LS++LV LR D
Sbjct: 245 IAGIPGIGEKTAIELITKFGSVENLLQQRDKVTTKRALKGLLADKGEALLSKRLVALRAD 304

Query: 253 VP---ITIPLEHLILEDC--NGPRLISFLKALE 280
           +P   +   ++  I      +G RL   LKA+ 
Sbjct: 305 LPSYMLPFTMDDFIWRKVHDDGQRLFQLLKAMS 337


>gi|191168545|ref|ZP_03030330.1| exodeoxyribonuclease-9 [Escherichia coli B7A]
 gi|190901392|gb|EDV61156.1| exodeoxyribonuclease-9 [Escherichia coli B7A]
          Length = 251

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 128/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              LTG S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLTGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|308190226|ref|YP_003923157.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
 gi|307624968|gb|ADN69273.1| putative DNA-directed DNA polymerase [Mycoplasma fermentans JER]
          Length = 294

 Score =  231 bits (589), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 91/276 (32%), Positives = 138/276 (50%), Gaps = 21/276 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M K+N   L+DG+  ++ +FYA         + R   GL  N +  F   L KL+   R 
Sbjct: 1   MNKDN-FLLIDGNYLLFSSFYASYNPDRLENIMRSPQGLTTNGVHVFLMTLSKLIAYFRP 59

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    +  + FD    T R++I+ DYKA R + PE++  Q  L++       I   E  G
Sbjct: 60  K----YLFIAFDAHGETKRHKIFKDYKAGRTQAPEIIFEQFSLIKDILTKLNIKWFEQVG 115

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHV 168
            EADD+IAT    A+ +     I S DKDL+QLV+  T +   VKE      E  DI + 
Sbjct: 116 DEADDLIATL---AQNQDCNNLIFSKDKDLLQLVNLNTSVIKVVKENFKVSYELEDINNF 172

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
               GI P ++   + L GDS DN+ GI GIG+K A  L+Q + ++EN+  N  +IK K 
Sbjct: 173 ETIHGIKPSQVADYKGLAGDSSDNLRGINGIGHKGAIKLIQTFDSIENMYQNIDQIKGKT 232

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
            +E +L+  + A L + L  L  +V +   +   +L
Sbjct: 233 -KEKLLDEKDQAFLCKALAKLNLNVDMNKNISDYLL 267


>gi|62181481|ref|YP_217898.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62129114|gb|AAX66817.1| exonuclease IX, 5'-3' exonuclease [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322715965|gb|EFZ07536.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 271

 Score =  231 bits (589), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 24  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 67

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 68  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 127

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 128 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 187

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +  ++ +K  R+ +  + E A 
Sbjct: 188 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDKVPEKW-RKKLETHKEMAF 246

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 247 LCRDIARLQTDLHIDGNLQQLRL 269


>gi|227888339|ref|ZP_04006144.1| exonuclease IX [Escherichia coli 83972]
 gi|300979389|ref|ZP_07174533.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 45-1]
 gi|301049438|ref|ZP_07196399.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 185-1]
 gi|331648526|ref|ZP_08349614.1| exodeoxyribonuclease IX [Escherichia coli M605]
 gi|269849480|sp|B7MLB9|XNI_ECO45 RecName: Full=Protein Xni
 gi|269849491|sp|Q1R7P3|XNI_ECOUT RecName: Full=Protein Xni
 gi|269849513|sp|Q8FEF2|XNI_ECOL6 RecName: Full=Protein Xni
 gi|269849728|sp|A1AEY5|XNI_ECOK1 RecName: Full=Protein Xni
 gi|227834608|gb|EEJ45074.1| exonuclease IX [Escherichia coli 83972]
 gi|281179799|dbj|BAI56129.1| exonuclease IX [Escherichia coli SE15]
 gi|300298788|gb|EFJ55173.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 185-1]
 gi|300409489|gb|EFJ93027.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 45-1]
 gi|307554770|gb|ADN47545.1| exodeoxyribonuclease IX [Escherichia coli ABU 83972]
 gi|307625632|gb|ADN69936.1| exonuclease IX [Escherichia coli UM146]
 gi|315289348|gb|EFU48743.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 110-3]
 gi|315293771|gb|EFU53123.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 153-1]
 gi|323950985|gb|EGB46861.1| 5'-3' exonuclease [Escherichia coli H252]
 gi|323957190|gb|EGB52914.1| 5'-3' exonuclease [Escherichia coli H263]
 gi|324005647|gb|EGB74866.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 57-2]
 gi|330908827|gb|EGH37341.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331042273|gb|EGI14415.1| exodeoxyribonuclease IX [Escherichia coli M605]
          Length = 251

 Score =  231 bits (589), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|254385029|ref|ZP_05000363.1| 5'-3' exonuclease [Streptomyces sp. Mg1]
 gi|194343908|gb|EDX24874.1| 5'-3' exonuclease [Streptomyces sp. Mg1]
          Length = 301

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 26/305 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  YRA++  P   +  DG PVNA+ G  + + +L+Q+ R + + +     +  
Sbjct: 1   MLLDTASLYYRAYFGVPDSVKAPDGTPVNAVRGLLDFIGRLVQDHRPDDLVACMDADW-- 58

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R              P+ L PQ+P++  A  AFGI  + + G+E
Sbjct: 59  -RPQWRVELIPSYKAHRVAVETETGPDLEDTPDTLAPQVPIIEAALDAFGIARVGVAGYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIK 170
           ADD+I T T  A      V I++ D+DL QLV       +   +K     +  D   + +
Sbjct: 118 ADDVIGTLTARAS---GPVDIVTGDRDLYQLVDDARGRRVLYPLKGVGTLQVTDEAWLRE 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---K 227
           K+G+       L  L GD  D +PG+PGIG KTAA LL  YGNL  I+      +     
Sbjct: 175 KYGVDGPGYADLALLRGDPSDGLPGVPGIGEKTAAKLLDAYGNLAGIIAAIDDPRSRLTA 234

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +R+ + E      ++  +V + +DVP+      L         + +          ++R
Sbjct: 235 TQRKRLDESRPYLAVAPTVVKVASDVPLPDFDPALPRVAAQPDLVDALAHRWGLGGAVSR 294

Query: 288 VATTY 292
           +++  
Sbjct: 295 LSSAL 299


>gi|198241843|ref|YP_002216946.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|226733932|sp|B5FTX5|XNI_SALDC RecName: Full=Protein Xni
 gi|269849494|sp|B5QWQ6|XNI_SALEP RecName: Full=Protein Xni
 gi|269849495|sp|B5RDV0|XNI_SALG2 RecName: Full=Protein Xni
 gi|197936359|gb|ACH73692.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326624711|gb|EGE31056.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 251

 Score =  231 bits (588), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  GI      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|215488115|ref|YP_002330546.1| exonuclease IX [Escherichia coli O127:H6 str. E2348/69]
 gi|215266187|emb|CAS10613.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 281

 Score =  231 bits (588), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 128/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N + + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFKSLEGIYENLNAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|170681600|ref|YP_001744962.1| exonuclease IX [Escherichia coli SMS-3-5]
 gi|170519318|gb|ACB17496.1| exodeoxyribonuclease-9 [Escherichia coli SMS-3-5]
          Length = 251

 Score =  231 bits (588), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEIPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|306812321|ref|ZP_07446519.1| exonuclease IX [Escherichia coli NC101]
 gi|331658912|ref|ZP_08359854.1| exodeoxyribonuclease IX [Escherichia coli TA206]
 gi|269849484|sp|B7MZ94|XNI_ECO81 RecName: Full=Protein Xni
 gi|305854359|gb|EFM54797.1| exonuclease IX [Escherichia coli NC101]
 gi|315298845|gb|EFU58099.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 16-3]
 gi|331053494|gb|EGI25523.1| exodeoxyribonuclease IX [Escherichia coli TA206]
          Length = 251

 Score =  231 bits (588), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDMHIDGNLQQLRL 249


>gi|253687326|ref|YP_003016516.1| 5'-3' exonuclease [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259710448|sp|C6DAH2|XNI_PECCP RecName: Full=Protein Xni
 gi|251753904|gb|ACT11980.1| 5'-3' exonuclease [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 260

 Score =  231 bits (588), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 139/262 (53%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   I    + L +L+QNS+     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CITACQHALHQLIQNSQ----PTHAVAVF 49

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+++ PDYKA R  +P+ L  +LP ++ A  A G+ +    G EADD+ AT
Sbjct: 50  DDEDRDTSWRHQLLPDYKAGRTPMPDNLKQELPQIKAAFAAAGVASWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL++P   + D  ++  +D+  V +++G+ P+++    
Sbjct: 110 LATKLSSAGHQATIVSTDKGYCQLLAPHIQIRDYFQKRWLDLPFVEQEFGVSPQQLTDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG K+AA LLQ+ G+LE +      + +K  R+ + ++ E A +S
Sbjct: 170 GLAGISSSKIPGVAGIGPKSAAQLLQQAGSLEALYQQLDGVPEKW-RKKLEQHKEMALVS 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  LRTD+ +   L+ L L 
Sbjct: 229 RQIATLRTDLTLNGNLQQLRLP 250


>gi|293406290|ref|ZP_06650216.1| exonuclease xni [Escherichia coli FVEC1412]
 gi|298382026|ref|ZP_06991623.1| exonuclease xni [Escherichia coli FVEC1302]
 gi|269849489|sp|B7N732|XNI_ECOLU RecName: Full=Protein Xni
 gi|291426296|gb|EFE99328.1| exonuclease xni [Escherichia coli FVEC1412]
 gi|298277166|gb|EFI18682.1| exonuclease xni [Escherichia coli FVEC1302]
          Length = 251

 Score =  231 bits (588), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 129/263 (49%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                V+A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRR----------------VHAVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRTAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|319777593|ref|YP_004137244.1| DNA polymerase i [Mycoplasma fermentans M64]
 gi|318038668|gb|ADV34867.1| DNA polymerase I [Mycoplasma fermentans M64]
          Length = 294

 Score =  231 bits (588), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 21/276 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M K+N   L+DG+  ++ +FYA         + R   GL  N +  F   L KL+   + 
Sbjct: 1   MNKDN-FLLIDGNYLLFSSFYASYNPDRLENIMRSPQGLTTNGVHVFLMTLSKLIAYFKP 59

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +    +  + FD    T R++I+ DYKA R + PE++  Q  L++       I   E  G
Sbjct: 60  K----YLFIAFDAYGETRRHKIFKDYKAGRTQAPEIIFEQFSLIKEILTKLNIKWFEQVG 115

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHV 168
            EADD+IAT    A+ +     I S DKDL+QLV+  T +   VKE      E  DI + 
Sbjct: 116 DEADDLIATL---AQNQDCNNLIFSKDKDLLQLVNLNTSVIKVVKENFKVSYELEDINNF 172

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
               GI P ++V  + L GDS DN+ GI GIG+K A  L+Q + ++EN+  N  +IK K 
Sbjct: 173 ETIHGIKPSQVVDYKGLAGDSSDNLRGINGIGHKGAIKLIQTFDSIENMYQNIDQIKGKT 232

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
            +E +L+  + A L + L  L  +V +   +   +L
Sbjct: 233 -KEKLLDEKDQAFLCKALAKLNLNVDMNKNISDYLL 267


>gi|254232253|ref|ZP_04925580.1| hypothetical protein TBCG_02040 [Mycobacterium tuberculosis C]
 gi|308369618|ref|ZP_07418455.2| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu002]
 gi|308370913|ref|ZP_07423185.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu003]
 gi|124601312|gb|EAY60322.1| hypothetical protein TBCG_02040 [Mycobacterium tuberculosis C]
 gi|308327019|gb|EFP15870.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu002]
 gi|308330454|gb|EFP19305.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu003]
          Length = 313

 Score =  230 bits (587), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 141/315 (44%), Gaps = 33/315 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + +  
Sbjct: 1   MLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDW-- 58

Query: 68  PAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      GF
Sbjct: 59  -RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGF 117

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHV 168
           EADD++ T      +    V ++S D+DL+Q+V+                K        V
Sbjct: 118 EADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 175

Query: 169 IKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   
Sbjct: 176 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 235

Query: 225 K---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLKAL 279
           K    K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R        
Sbjct: 236 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAELATRF 295

Query: 280 EFTKLINRVATTYDC 294
                I R+    D 
Sbjct: 296 GVESSIARLQKALDT 310


>gi|331664359|ref|ZP_08365265.1| 5-3 exonuclease [Escherichia coli TA143]
 gi|331674289|ref|ZP_08375049.1| 5-3 exonuclease [Escherichia coli TA280]
 gi|331058290|gb|EGI30271.1| 5-3 exonuclease [Escherichia coli TA143]
 gi|331068383|gb|EGI39778.1| 5-3 exonuclease [Escherichia coli TA280]
          Length = 251

 Score =  230 bits (587), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD       +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRNSGWRHQRLPDYKAGRPPMPEELHDEMPALRTAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|302802031|ref|XP_002982771.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
 gi|300149361|gb|EFJ16016.1| hypothetical protein SELMODRAFT_54861 [Selaginella moellendorffii]
          Length = 363

 Score =  230 bits (587), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 154/333 (46%), Gaps = 62/333 (18%)

Query: 3   KENHLFLVDGSSFIYRAFYA---------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR 53
            +  + LVDGS+ I+RA+Y           P L  + D +    +      +  LL    
Sbjct: 12  SKGRILLVDGSAVIFRAYYKVMAKAHHNLIPELESEADWVLT--VFTAFTTILGLL---- 65

Query: 54  KESIASHFAVIFDYPAV-----------------TFRNEIYPDYKANRPKIPEMLLPQLP 96
            +   SHFAV+FD+                    TFR+ ++P+YK NRP  P+ +   L 
Sbjct: 66  -DLSPSHFAVVFDHKGGFADEQRCKTCVFIFTGLTFRHTMFPEYKKNRPPTPDTIYQGLD 124

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
            +R A  A GI  IE+ G EADD+IAT    A      V I+S DKD  Q++SP   L  
Sbjct: 125 HLRPALVAMGIKVIEVPGVEADDVIATLAVSAATSEMKVRIVSPDKDFFQILSPDIRLLR 184

Query: 157 TVKEEK----IDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIP----------------- 194
            V +        +E    ++G + P + V + +L GD+ DNIP                 
Sbjct: 185 FVPKGAGMVSFGMEEFSARFGSLEPAQFVDVLSLIGDTCDNIPGKYYHTIDSRLRSITCN 244

Query: 195 --GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTD 252
             GIPGIG KTA  L+ ++G++EN+L    ++  K+  + +L     A LS++LV LR D
Sbjct: 245 IAGIPGIGEKTAIELITKFGSVENLLKQRDKVTTKRALKGLLADKGEALLSKRLVALRAD 304

Query: 253 VP---ITIPLEHLILEDC--NGPRLISFLKALE 280
           +P   +   ++  I      +G RL   LKA+ 
Sbjct: 305 LPSYMLPFTMDDFIWRKVHDDGQRLFQLLKAMS 337


>gi|307331453|ref|ZP_07610570.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Streptomyces
           violaceusniger Tu 4113]
 gi|306882896|gb|EFN13965.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Streptomyces
           violaceusniger Tu 4113]
          Length = 310

 Score =  230 bits (587), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 144/315 (45%), Gaps = 35/315 (11%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R + + +     FD+
Sbjct: 1   MLLDTASLYFRAYFGVPDSVRAPDGTPVNAVRGLLDFIARLVQDHRPDDLVACMD--FDW 58

Query: 68  PAVTFRNEIYPDYKANR--------------------PKIPEMLLPQLPLVRLATQAFGI 107
               +R  +   YKA+R                     ++P+ L PQ+P++     A GI
Sbjct: 59  -RPAWRVALISTYKAHRVAEEAPEGAGVDQEGAGVDQEEVPDTLSPQVPVIDEVLDAIGI 117

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----E 161
             +    +EADD+I T T  A      V I++ D+DL QLV       +   VK     +
Sbjct: 118 ARVGAADYEADDVIGTLTGRAS---GPVDIVTGDRDLFQLVDDERGVRVLYPVKGVGTLQ 174

Query: 162 KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
            +D  +V +K+G+     V L  L GD  D +PG+PG+G KTAA LL  +G+L  I+   
Sbjct: 175 LVDESYVREKYGVDGRGYVDLALLRGDPSDGLPGVPGVGEKTAAKLLAAHGDLAGIMAAV 234

Query: 222 SRIKQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
                K    +R+ + E      ++ K+V + +DV +      L     +   + +  + 
Sbjct: 235 DDPTAKLTPTQRKRLDEARPYIEVAPKVVRVASDVALPAFDPALPRSPRDPGAVEALAER 294

Query: 279 LEFTKLINRVATTYD 293
                 + R+ +T +
Sbjct: 295 WGLGGSLRRLLSTLE 309


>gi|51597329|ref|YP_071520.1| exonuclease IX [Yersinia pseudotuberculosis IP 32953]
 gi|153948056|ref|YP_001399986.1| exonuclease IX [Yersinia pseudotuberculosis IP 31758]
 gi|170023304|ref|YP_001719809.1| exonuclease IX [Yersinia pseudotuberculosis YPIII]
 gi|186896435|ref|YP_001873547.1| exonuclease IX [Yersinia pseudotuberculosis PB1/+]
 gi|81638758|sp|Q667H8|XNI_YERPS RecName: Full=Protein Xni
 gi|166918971|sp|A7FFF8|XNI_YERP3 RecName: Full=Protein Xni
 gi|226733943|sp|B2JZ46|XNI_YERPB RecName: Full=Protein Xni
 gi|226733944|sp|B1JQE9|XNI_YERPY RecName: Full=Protein Xni
 gi|51590611|emb|CAH22252.1| exodeoxyribonuclease IX [Yersinia pseudotuberculosis IP 32953]
 gi|152959551|gb|ABS47012.1| exodeoxyribonuclease-9 [Yersinia pseudotuberculosis IP 31758]
 gi|169749838|gb|ACA67356.1| 5'-3' exonuclease [Yersinia pseudotuberculosis YPIII]
 gi|186699461|gb|ACC90090.1| 5'-3' exonuclease [Yersinia pseudotuberculosis PB1/+]
          Length = 251

 Score =  230 bits (587), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 137/262 (52%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   +    + L +L+Q+S+     SH   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CVKACQHALQQLIQHSQ----PSHAVAVF 49

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++  PDYKA R  +P+ L  ++PL+R A    G+      G EADD+ AT
Sbjct: 50  DEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 110 LVVKVAGAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPRQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ G+G KTA LLLQ+   LE +  N   I +K  R+ + ++ + A   
Sbjct: 170 GLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPEKW-RKKLQQHQQMAFTC 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           +++  L+TD+ ++  L+ L L+
Sbjct: 229 KQIATLKTDLLLSGNLQQLRLK 250


>gi|168463875|ref|ZP_02697792.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|213052487|ref|ZP_03345365.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213417739|ref|ZP_03350857.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213424898|ref|ZP_03357648.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213621784|ref|ZP_03374567.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213649814|ref|ZP_03379867.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213857391|ref|ZP_03384362.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|289829836|ref|ZP_06547351.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|269849496|sp|Q8Z433|XNI_SALTI RecName: Full=Protein Xni
 gi|195633258|gb|EDX51672.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 251

 Score =  230 bits (587), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|254480640|ref|ZP_05093887.1| 5'-3' exonuclease, N-terminal resolvase-like domain family [marine
           gamma proteobacterium HTCC2148]
 gi|214039223|gb|EEB79883.1| 5'-3' exonuclease, N-terminal resolvase-like domain family [marine
           gamma proteobacterium HTCC2148]
          Length = 299

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 154/300 (51%), Gaps = 11/300 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  ++L+D S +I+RA+++ P      DG+ +NA+ G+ + L   ++ +R    +   A 
Sbjct: 2   KQRVWLLDSSIYIFRAWFSMPDQWHTADGMSLNAVYGYASFLCDFVKRTR---QSPWLAA 58

Query: 64  IFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            FD      FRNE+YP YKA+R    E L  QL   R  T   GIP+   + +EADD +A
Sbjct: 59  AFDESLGSCFRNELYPGYKASRTLPDEALAFQLRACRTLTDLCGIPSYGGERYEADDYLA 118

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T   +A  +  + T+++ DKDL QL+       +D   ++ +D      ++G+PP++   
Sbjct: 119 TLARLARTKKLSTTVVTRDKDLGQLLVENSDQWWDFASDQTLDRAAFQARFGVPPDQFAD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILE 235
              L GDS+D+IPG+PG+G KTAA ++   G L++I  N   +         + ++ + E
Sbjct: 179 YLGLVGDSVDDIPGVPGVGAKTAAAVISSLGGLDDIERNIDSVAALPLRGASRIKDRLQE 238

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
           +   A LSR+L  L++++P    L    L   +  R+ ++L +L     + +       +
Sbjct: 239 HWPQALLSRELARLQSEIPGLENLPEFHLTAESTERVANYLDSLGIGGPLVKRWQALGAE 298


>gi|168242736|ref|ZP_02667668.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194447676|ref|YP_002046942.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|226733935|sp|B4TGM7|XNI_SALHS RecName: Full=Protein Xni
 gi|194405980|gb|ACF66199.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338115|gb|EDZ24879.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 251

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 133/261 (50%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   +    + L +L+ +S+     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGTP--CVETCQHALDQLIIHSQ----PTHAVAVF 49

Query: 66  DYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ AT
Sbjct: 50  DDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++    
Sbjct: 110 LALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A L 
Sbjct: 170 GLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAFLC 228

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           R +  L+TD+ I   L+ L L
Sbjct: 229 RDIARLQTDLHIDGNLQQLRL 249


>gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain
           Friedlin]
 gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major]
 gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major
           strain Friedlin]
          Length = 931

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 98/290 (33%), Positives = 142/290 (48%), Gaps = 23/290 (7%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKT---------------DLGQKIRRAFISPPTK 743
           +H  +    T TGRL+ +EPNLQN+P                  +     RR F++    
Sbjct: 632 LHPNFLQEGTDTGRLSCVEPNLQNLPRNGITAAVAGNDAEEDGEEDLLGFRRCFVATDGC 691

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+S DY QIELR+LAH+     L +    S DIHR +A  +F      VS + RR AK 
Sbjct: 692 VLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP--VSTEERRLAKR 749

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           + F ++YG  P  LAT + +    A        + FPGI  Y  +     R NG+V T+ 
Sbjct: 750 VVFGLLYGAGPKTLATHMGVTVDRALHITSLLANAFPGIDAYQRRVIEEARTNGFVRTLS 809

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL--EDHKLATKML 921
           GR  +  +I S   S R+  ER A N+ +QGSAAD+ + AM++V K +     +    +L
Sbjct: 810 GRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLL 869

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
            QIHDE+VF V +E +     ++  +M  A      L VPL V  K  ++
Sbjct: 870 SQIHDEMVFMVRKELLPMVVPLVSSAMSHAM----QLLVPLSVTAKFGDS 915



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 18/213 (8%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            Q         +  ++  L   L  + LL  + R +K +  +++ ++  G+++D   + +
Sbjct: 351 AQCQLAHQVYYLATVYRSLYGLLGSKGLLQAFLRQEKRIALLLALLKYNGMRVDLHEVHR 410

Query: 598 VSAEISKNLLSLEENIYDLS---GEKFNLSSPKQLGDILFTKLKF--------------P 640
                   +    +    L    GE FN+ S  Q    L+  L+                
Sbjct: 411 YQKSCEAEMARQRQLANKLVPELGEDFNIQSHDQCRKALYEVLQLGKYLLKSGNGEDVGA 470

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRV 699
           +G     G   +TA+D  +     +     +L +R++SK+  TY + + ++ + + + + 
Sbjct: 471 TGLTITKGGRLSTAEDTLRALARHHKFPACLLRYRKVSKLMQTYIEGMMSYAVVRSSAQA 530

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
                L S       S     +      D G K
Sbjct: 531 SPAPCLGSVNAETGTSESTKGRQQAHGDDEGAK 563


>gi|308232029|ref|ZP_07663975.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu001]
 gi|308215233|gb|EFO74632.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu001]
          Length = 313

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 140/315 (44%), Gaps = 33/315 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + +  
Sbjct: 1   MLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDW-- 58

Query: 68  PAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      GF
Sbjct: 59  -RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGF 117

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHV 168
           EADD++ T      +    V ++S D+DL+Q+V+                K        V
Sbjct: 118 EADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 175

Query: 169 IKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   
Sbjct: 176 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 235

Query: 225 K---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLKAL 279
           K    K  R  +L  +   + + ++V + TD P+T+  P +   L   +  R        
Sbjct: 236 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 295

Query: 280 EFTKLINRVATTYDC 294
                I R+    D 
Sbjct: 296 GVESSIARLQKALDT 310


>gi|170766180|ref|ZP_02900991.1| exodeoxyribonuclease-9 [Escherichia albertii TW07627]
 gi|170125326|gb|EDS94257.1| exodeoxyribonuclease-9 [Escherichia albertii TW07627]
 gi|323966776|gb|EGB62207.1| 5'-3' exonuclease [Escherichia coli M863]
 gi|323978591|gb|EGB73673.1| 5'-3' exonuclease [Escherichia coli TW10509]
          Length = 251

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLEMHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|38704119|ref|NP_311685.2| exonuclease IX [Escherichia coli O157:H7 str. Sakai]
 gi|168751015|ref|ZP_02776037.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4113]
 gi|168758183|ref|ZP_02783190.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4401]
 gi|168764518|ref|ZP_02789525.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4501]
 gi|168766771|ref|ZP_02791778.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4486]
 gi|168777575|ref|ZP_02802582.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4196]
 gi|168778792|ref|ZP_02803799.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4076]
 gi|168788062|ref|ZP_02813069.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC869]
 gi|168801662|ref|ZP_02826669.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC508]
 gi|170018956|ref|YP_001723910.1| exonuclease IX [Escherichia coli ATCC 8739]
 gi|193065120|ref|ZP_03046194.1| exodeoxyribonuclease-9 [Escherichia coli E22]
 gi|193071101|ref|ZP_03052026.1| exodeoxyribonuclease-9 [Escherichia coli E110019]
 gi|194426223|ref|ZP_03058778.1| exodeoxyribonuclease-9 [Escherichia coli B171]
 gi|194439644|ref|ZP_03071715.1| exodeoxyribonuclease-9 [Escherichia coli 101-1]
 gi|195936402|ref|ZP_03081784.1| exonuclease IX [Escherichia coli O157:H7 str. EC4024]
 gi|208809296|ref|ZP_03251633.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4206]
 gi|208812635|ref|ZP_03253964.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4045]
 gi|208820419|ref|ZP_03260739.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4042]
 gi|209398738|ref|YP_002272264.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4115]
 gi|217327577|ref|ZP_03443660.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. TW14588]
 gi|226524743|ref|NP_417278.4| Ssb-binding protein, misidentified as ExoIX [Escherichia coli str.
           K-12 substr. MG1655]
 gi|254794739|ref|YP_003079576.1| exonuclease IX [Escherichia coli O157:H7 str. TW14359]
 gi|256019414|ref|ZP_05433279.1| exonuclease IX [Shigella sp. D9]
 gi|256024698|ref|ZP_05438563.1| exonuclease IX [Escherichia sp. 4_1_40B]
 gi|261226099|ref|ZP_05940380.1| exonuclease IX [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256646|ref|ZP_05949179.1| exonuclease IX [Escherichia coli O157:H7 str. FRIK966]
 gi|293416045|ref|ZP_06658685.1| exonuclease xni [Escherichia coli B185]
 gi|300815782|ref|ZP_07096006.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 107-1]
 gi|300820588|ref|ZP_07100739.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 119-7]
 gi|300906673|ref|ZP_07124362.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 84-1]
 gi|300920345|ref|ZP_07136783.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 115-1]
 gi|300931260|ref|ZP_07146600.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 187-1]
 gi|300950532|ref|ZP_07164440.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 116-1]
 gi|300958118|ref|ZP_07170276.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 175-1]
 gi|301304569|ref|ZP_07210679.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 124-1]
 gi|301645233|ref|ZP_07245186.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 146-1]
 gi|307139485|ref|ZP_07498841.1| exonuclease IX [Escherichia coli H736]
 gi|309786082|ref|ZP_07680711.1| putative exonuclease [Shigella dysenteriae 1617]
 gi|309795268|ref|ZP_07689687.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 145-7]
 gi|312972984|ref|ZP_07787157.1| putative exonuclease [Escherichia coli 1827-70]
 gi|331654283|ref|ZP_08355283.1| 5-3 exonuclease [Escherichia coli M718]
 gi|331669533|ref|ZP_08370379.1| 5-3 exonuclease [Escherichia coli TA271]
 gi|269849478|sp|A7ZQP2|XNI_ECO24 RecName: Full=Protein Xni
 gi|269849481|sp|B7LEX6|XNI_ECO55 RecName: Full=Protein Xni
 gi|269849482|sp|Q8X6R9|XNI_ECO57 RecName: Full=Protein Xni
 gi|269849485|sp|B7LXL4|XNI_ECO8A RecName: Full=Protein Xni
 gi|269849486|sp|C4ZZV3|XNI_ECOBW RecName: Full=Protein Xni
 gi|269849487|sp|B1XDK7|XNI_ECODH RecName: Full=Protein Xni
 gi|269849488|sp|A8A3T3|XNI_ECOHS RecName: Full=Protein Xni
 gi|269849490|sp|B6I6J6|XNI_ECOSE RecName: Full=Protein Xni
 gi|269849498|sp|B2TZD5|XNI_SHIB3 RecName: Full=Protein Xni
 gi|269849499|sp|Q31XJ2|XNI_SHIBS RecName: Full=Protein Xni
 gi|269849500|sp|Q32CC0|XNI_SHIDS RecName: Full=Protein Xni
 gi|269849503|sp|Q3YY58|XNI_SHISS RecName: Full=Protein Xni
 gi|269849724|sp|P38506|XNI_ECOLI RecName: Full=Protein Xni; AltName: Full=Exonuclease IX;
           Short=ExoIX
 gi|169753884|gb|ACA76583.1| 5'-3' exonuclease [Escherichia coli ATCC 8739]
 gi|187767211|gb|EDU31055.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4196]
 gi|188014862|gb|EDU52984.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4113]
 gi|189003443|gb|EDU72429.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4076]
 gi|189354954|gb|EDU73373.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4401]
 gi|189363834|gb|EDU82253.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4486]
 gi|189365504|gb|EDU83920.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4501]
 gi|189372147|gb|EDU90563.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC869]
 gi|189376214|gb|EDU94630.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC508]
 gi|192927251|gb|EDV81871.1| exodeoxyribonuclease-9 [Escherichia coli E22]
 gi|192955562|gb|EDV86040.1| exodeoxyribonuclease-9 [Escherichia coli E110019]
 gi|194415531|gb|EDX31798.1| exodeoxyribonuclease-9 [Escherichia coli B171]
 gi|194421391|gb|EDX37407.1| exodeoxyribonuclease-9 [Escherichia coli 101-1]
 gi|208729097|gb|EDZ78698.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4206]
 gi|208733912|gb|EDZ82599.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4045]
 gi|208740542|gb|EDZ88224.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4042]
 gi|209160138|gb|ACI37571.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. EC4115]
 gi|217319944|gb|EEC28369.1| exodeoxyribonuclease-9 [Escherichia coli O157:H7 str. TW14588]
 gi|226510970|gb|AAC75840.2| Ssb-binding protein, misidentified as ExoIX [Escherichia coli str.
           K-12 substr. MG1655]
 gi|254594139|gb|ACT73500.1| Ssb-binding protein [Escherichia coli O157:H7 str. TW14359]
 gi|260448151|gb|ACX38573.1| 5'-3' exonuclease [Escherichia coli DH1]
 gi|291432234|gb|EFF05216.1| exonuclease xni [Escherichia coli B185]
 gi|300315184|gb|EFJ64968.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 175-1]
 gi|300401574|gb|EFJ85112.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 84-1]
 gi|300412670|gb|EFJ95980.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 115-1]
 gi|300450142|gb|EFK13762.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 116-1]
 gi|300460914|gb|EFK24407.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 187-1]
 gi|300526852|gb|EFK47921.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 119-7]
 gi|300531711|gb|EFK52773.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 107-1]
 gi|300840173|gb|EFK67933.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 124-1]
 gi|301076503|gb|EFK91309.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 146-1]
 gi|308121239|gb|EFO58501.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 145-7]
 gi|308926193|gb|EFP71671.1| putative exonuclease [Shigella dysenteriae 1617]
 gi|310332926|gb|EFQ00140.1| putative exonuclease [Escherichia coli 1827-70]
 gi|315256660|gb|EFU36628.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 85-1]
 gi|315615186|gb|EFU95823.1| exonuclease family protein [Escherichia coli 3431]
 gi|320189134|gb|EFW63793.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320202445|gb|EFW77015.1| DNA polymerase I [Escherichia coli EC4100B]
 gi|320640448|gb|EFX09987.1| flap endonuclease-like protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320645694|gb|EFX14679.1| flap endonuclease-like protein [Escherichia coli O157:H- str.
           493-89]
 gi|320650994|gb|EFX19434.1| flap endonuclease-like protein [Escherichia coli O157:H- str. H
           2687]
 gi|320656490|gb|EFX24386.1| flap endonuclease-like protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662386|gb|EFX29783.1| flap endonuclease-like protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667084|gb|EFX34047.1| flap endonuclease-like protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323159885|gb|EFZ45855.1| putative exonuclease [Escherichia coli E128010]
 gi|323167862|gb|EFZ53553.1| putative exonuclease [Shigella sonnei 53G]
 gi|323172899|gb|EFZ58530.1| putative exonuclease [Escherichia coli LT-68]
 gi|323183340|gb|EFZ68737.1| exonuclease xni [Escherichia coli 1357]
 gi|323935840|gb|EGB32143.1| 5'-3' exonuclease [Escherichia coli E1520]
 gi|323946479|gb|EGB42505.1| 5'-3' exonuclease [Escherichia coli H120]
 gi|323960684|gb|EGB56308.1| 5'-3' exonuclease [Escherichia coli H489]
 gi|323971600|gb|EGB66831.1| 5'-3' exonuclease [Escherichia coli TA007]
 gi|324016346|gb|EGB85565.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 117-3]
 gi|324119840|gb|EGC13719.1| 5'-3' exonuclease [Escherichia coli E1167]
 gi|326339127|gb|EGD62942.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342991|gb|EGD66759.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
 gi|331047665|gb|EGI19742.1| 5-3 exonuclease [Escherichia coli M718]
 gi|331063201|gb|EGI35114.1| 5-3 exonuclease [Escherichia coli TA271]
 gi|332092152|gb|EGI97230.1| exonuclease xni [Shigella boydii 3594-74]
 gi|332344691|gb|AEE58025.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 251

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|71894539|ref|YP_278647.1| putative DNA polymerase I [Mycoplasma synoviae 53]
          Length = 291

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 144/301 (47%), Gaps = 17/301 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+K     ++DG+  ++++FYA       ++ R  +G P NAI  F   L K L   + +
Sbjct: 2   MEKA---LIIDGNYLMFQSFYATYRGDINVILRTSNGTPTNAITLFLKQLVKYLVFYKPD 58

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               +  + FD    T R+E+   YKANR K P+ L  Q  L++   +   +   E  G 
Sbjct: 59  ----YLFIAFDAKERTKRHELLDRYKANRIKAPQELFIQFDLIKEILKEMKVFYYESAGD 114

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADD+IAT+    E       I S DKDL+QLV+  T ++   K+E++   +  +K+ I 
Sbjct: 115 EADDLIATFCKNFES--LEKFIFSRDKDLLQLVNKNTRVF--FKDEEVTYLNFFEKYQIN 170

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS-RIKQKKRRENIL 234
           P++++  +AL GD  DN+PGI GIG KTA  LL E+   ENI  N   ++  +K + N+L
Sbjct: 171 PDQIIDFKALKGDPSDNLPGIKGIGDKTAIKLLNEFKTFENIYQNLDSKLISEKVKNNLL 230

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           +  E   L  +L  L  +V +      L   + +       L  LE       +      
Sbjct: 231 KGKENGMLCYQLAKLNYEVEVLPKNLDLFKLNIDLKASEKILDELELNTTKKMLLDKRWL 290

Query: 295 D 295
            
Sbjct: 291 Q 291


>gi|261856641|ref|YP_003263924.1| 5'-3' exonuclease [Halothiobacillus neapolitanus c2]
 gi|261837110|gb|ACX96877.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Halothiobacillus neapolitanus c2]
          Length = 324

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 17/283 (6%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLL-----QNSRKESIASH-- 60
           +L+D  + I+RA++         D  PV A+ GF + L  LL     QN +         
Sbjct: 15  WLIDSHAQIWRAWHGAEKTLVDADDQPVGALQGFADALLTLLESVFDQNIQPSVTPHAEH 74

Query: 61  ---FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                  FD P   +FR  IYP YKA+RP  P  L  QLP  R   +A G+ AI+  G+E
Sbjct: 75  GPVIVCTFDAPCNRSFRQTIYPAYKAHRPPAPAELTAQLPRCRALAEAAGLCAIDHPGYE 134

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+I T      K   AVTII+ DKDL QL+ P    ++ ++++ +    V + +G+ P
Sbjct: 135 ADDVIGTLVQRLRKRNRAVTIITGDKDLAQLLGPDDRWFNPMRQKVLAYGDVERHFGVKP 194

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ 230
           +++    ALTGD  DNIPG+PGIG + A  LL+++G ++ I  N + +   K R      
Sbjct: 195 QQIADWLALTGDVSDNIPGVPGIGPRIAGNLLKKHGTIDGIYANLAAVYGMKFRGAPRVQ 254

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
           + + E+    RLSR+L  +   +PI            N P+L+
Sbjct: 255 KLLAEHESLVRLSRQLTGIVCTLPIEHTPAPWQGIRDNLPQLL 297


>gi|22127027|ref|NP_670450.1| exonuclease IX [Yersinia pestis KIM 10]
 gi|45442587|ref|NP_994126.1| exonuclease IX [Yersinia pestis biovar Microtus str. 91001]
 gi|108813130|ref|YP_648897.1| exonuclease IX [Yersinia pestis Nepal516]
 gi|145598963|ref|YP_001163039.1| exonuclease IX [Yersinia pestis Pestoides F]
 gi|149366967|ref|ZP_01889000.1| exodeoxyribonuclease IX [Yersinia pestis CA88-4125]
 gi|166011901|ref|ZP_02232799.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211570|ref|ZP_02237605.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167419722|ref|ZP_02311475.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425285|ref|ZP_02317038.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468867|ref|ZP_02333571.1| exonuclease IX [Yersinia pestis FV-1]
 gi|218928200|ref|YP_002346075.1| exonuclease IX [Yersinia pestis CO92]
 gi|229837739|ref|ZP_04457899.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|229840961|ref|ZP_04461120.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843062|ref|ZP_04463212.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229903573|ref|ZP_04518686.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|294503049|ref|YP_003567111.1| exonuclease IX [Yersinia pestis Z176003]
 gi|123246269|sp|Q1CFD3|XNI_YERPN RecName: Full=Protein Xni
 gi|123776877|sp|Q7CH07|XNI_YERPE RecName: Full=Protein Xni
 gi|156630389|sp|A4TLA4|XNI_YERPP RecName: Full=Protein Xni
 gi|21960075|gb|AAM86701.1|AE013915_10 5'-3' exonuclease [Yersinia pestis KIM 10]
 gi|45437452|gb|AAS63003.1| exodeoxyribonuclease IX [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776778|gb|ABG19297.1| exodeoxyribonuclease IX [Yersinia pestis Nepal516]
 gi|115346811|emb|CAL19697.1| exodeoxyribonuclease IX [Yersinia pestis CO92]
 gi|145210659|gb|ABP40066.1| exodeoxyribonuclease IX [Yersinia pestis Pestoides F]
 gi|149290581|gb|EDM40657.1| exodeoxyribonuclease IX [Yersinia pestis CA88-4125]
 gi|165989167|gb|EDR41468.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207341|gb|EDR51821.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962463|gb|EDR58484.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167055685|gb|EDR65469.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679343|gb|EEO75446.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229689938|gb|EEO81997.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697327|gb|EEO87374.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704116|gb|EEO91128.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|262361085|gb|ACY57806.1| exonuclease IX [Yersinia pestis D106004]
 gi|262365327|gb|ACY61884.1| exonuclease IX [Yersinia pestis D182038]
 gi|294353508|gb|ADE63849.1| exonuclease IX [Yersinia pestis Z176003]
 gi|320014164|gb|ADV97735.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 251

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 137/262 (52%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   +    + L +L+Q+S+     SH   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CVKACQHALQQLIQHSQ----PSHAVAVF 49

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++  PDYKA R  +P+ L  ++PL+R A    G+      G EADD+ AT
Sbjct: 50  DEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 110 LVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGVLPRQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ G+G KTA LLLQ+   LE +  N   I +K  R+ + ++ + A   
Sbjct: 170 GLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPEKW-RKKLQQHQQMAFTC 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           +++  L+TD+ ++  L+ L L+
Sbjct: 229 KQIATLKTDLLLSGNLQQLRLK 250


>gi|56414921|ref|YP_151996.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363849|ref|YP_002143486.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|226733937|sp|B5BF27|XNI_SALPK RecName: Full=Protein Xni
 gi|269849727|sp|Q5PEL3|XNI_SALPA RecName: Full=Protein Xni
 gi|56129178|gb|AAV78684.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095326|emb|CAR60884.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 251

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|323180231|gb|EFZ65783.1| exonuclease xni [Escherichia coli 1180]
          Length = 251

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDTLNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|144575155|gb|AAZ43936.2| putative DNA polymerase I [Mycoplasma synoviae 53]
          Length = 294

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 144/301 (47%), Gaps = 17/301 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+K     ++DG+  ++++FYA       ++ R  +G P NAI  F   L K L   + +
Sbjct: 5   MEKA---LIIDGNYLMFQSFYATYRGDINVILRTSNGTPTNAITLFLKQLVKYLVFYKPD 61

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               +  + FD    T R+E+   YKANR K P+ L  Q  L++   +   +   E  G 
Sbjct: 62  ----YLFIAFDAKERTKRHELLDRYKANRIKAPQELFIQFDLIKEILKEMKVFYYESAGD 117

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADD+IAT+    E       I S DKDL+QLV+  T ++   K+E++   +  +K+ I 
Sbjct: 118 EADDLIATFCKNFES--LEKFIFSRDKDLLQLVNKNTRVF--FKDEEVTYLNFFEKYQIN 173

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS-RIKQKKRRENIL 234
           P++++  +AL GD  DN+PGI GIG KTA  LL E+   ENI  N   ++  +K + N+L
Sbjct: 174 PDQIIDFKALKGDPSDNLPGIKGIGDKTAIKLLNEFKTFENIYQNLDSKLISEKVKNNLL 233

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           +  E   L  +L  L  +V +      L   + +       L  LE       +      
Sbjct: 234 KGKENGMLCYQLAKLNYEVEVLPKNLDLFKLNIDLKASEKILDELELNTTKKMLLDKRWL 293

Query: 295 D 295
            
Sbjct: 294 Q 294


>gi|168027127|ref|XP_001766082.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682725|gb|EDQ69141.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 310

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 155/293 (52%), Gaps = 26/293 (8%)

Query: 7   LFLVDGSSFIYRAFY---------ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           L L+DG++ +YRA++         +   +  + D +    +    + + +LL     ++ 
Sbjct: 1   LLLLDGNAILYRAYFKIMAKVQYGSLKDMGSEADWVLT--VFTALSTMIRLL-----DTK 53

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H A  FDY  +TFR+E+YP YK+ R   P+ +   L  ++ A  + GI  +E+ G EA
Sbjct: 54  PTHVAAAFDYKGLTFRHELYPAYKSGRAPTPDTVCQALSCLKPALLSLGISVVEVAGVEA 113

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173
           DD IA +   A   G  V+I S DKD  Q++SP   L   V          ++   K++G
Sbjct: 114 DDAIAAFAVRAVDAGMHVSIASPDKDFFQIISPRLRLLRFVPRGSGIVPFGVKEFQKRFG 173

Query: 174 -IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            I P + + + AL GD +DNIPG+PG+G  TA  L++EYG +EN+L N  ++K K+ RE+
Sbjct: 174 DIQPWQYLEVLALMGDKVDNIPGLPGVGEVTALKLVKEYGTVENLLENRDKVKLKRPRES 233

Query: 233 ILEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDC--NGPRLISFLKALE 280
           ++       +S+KL+ LR D+P   +   L  L  +    NG + I  +KA+ 
Sbjct: 234 LMADDGGILMSKKLLSLRLDLPNHMLPYSLGDLRCQSPKDNGDQFIKLIKAMS 286


>gi|194434669|ref|ZP_03066923.1| exodeoxyribonuclease-9 [Shigella dysenteriae 1012]
 gi|194417066|gb|EDX33181.1| exodeoxyribonuclease-9 [Shigella dysenteriae 1012]
 gi|332089093|gb|EGI94203.1| exonuclease xni [Shigella dysenteriae 155-74]
          Length = 251

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPCIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|222151334|ref|YP_002560490.1| hypothetical protein MCCL_1087 [Macrococcus caseolyticus JCSC5402]
 gi|222120459|dbj|BAH17794.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 311

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 154/290 (53%), Gaps = 14/290 (4%)

Query: 7   LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           + ++DG + ++R F+AT L     R H+G+P N + GF       ++++     A+H  V
Sbjct: 25  VLIIDGMALLFRHFFATSLHGNYMRNHEGIPTNGVQGFIKHAISAIEDTH----AAHVIV 80

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D  A TFRN+I  +YKA+RP   E ++PQ  + +  ++  G   I +  FEADD+I T
Sbjct: 81  CWDMGAKTFRNDIDSNYKAHRPAPQEEMIPQFEMAQRVSEELGFVNIGVHQFEADDVIGT 140

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179
                +KE + +T+IS D+DL+Q++     ++   K      K D++   +++ + P+++
Sbjct: 141 LAKYLDKE-YHITVISGDRDLLQVLEENIEIWLIKKGFSIYSKYDLKRFEEEYHLKPKQL 199

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + ++A  GD+ D  PG+ GIG KTA  L+Q Y ++  +L +   +  K ++  I    + 
Sbjct: 200 IDVKAFMGDNADGYPGVKGIGEKTALKLIQSYQDVNGVLASLEEL-PKGQQNKIATSIDA 258

Query: 240 ARLSRKLVMLRTDVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            + SR+L  + T+VPI +  ++  +    N   + +  +  E   +   +
Sbjct: 259 LKTSRRLAEIHTEVPINLEDIKKRMSYVANFEFIRNVCEKYELKSVSRFL 308


>gi|204928172|ref|ZP_03219372.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322494|gb|EDZ07691.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 251

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPTLRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|320182413|gb|EFW57310.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 251

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDCFQKRWLDAPCIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|298707099|emb|CBJ29891.1| procaryotic DNA polymerase I [Ectocarpus siliculosus]
          Length = 485

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 151/304 (49%), Gaps = 15/304 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH--FAV 63
            + LVDG    YR+F+  P LS   DG PV A+ GFCN + KL+     E +       V
Sbjct: 183 PVVLVDGHYITYRSFHGMPHLS-AADGTPVGALVGFCNTMNKLVVQPWAEGVERRQKVVV 241

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD     FR+++ P YK +R + PE L PQ  LVR A +A+G+  IE  G+E DD+IA+
Sbjct: 242 VFDTGDDNFRHDLSPSYKKHRTETPEALRPQFALVRKACEAYGLETIEGPGYEGDDVIAS 301

Query: 124 YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
               A   G   VTI+S DKDL QLV+    + +    E++  E V+ K+  PP ++  L
Sbjct: 302 LALEAVIGGATNVTIVSADKDLAQLVTRRVNMLNVYTGERLGPEEVLAKFLAPPGRLADL 361

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR--ENILEYAETA 240
            A+ GD  D I G  G G   AA +L ++  LE  +        KK    E + +  E  
Sbjct: 362 LAIAGDKSDGIVGAEGYGPVKAAKVLAKHETLEAAVDEICSTISKKIEDPELVAKTREQV 421

Query: 241 RLSRKLVMLRTDVPIT--IPLEHLI-------LEDCNGPRLISFLKALEFTKLINRVATT 291
            L+R+LV L T VP+     L+ L          +    RL++F++  E  +L  R +  
Sbjct: 422 LLARRLVELCTTVPLDRRTGLKSLASVPTFHLEGEGAAERLLAFMRRFEMDELSLRTSRL 481

Query: 292 YDCD 295
              +
Sbjct: 482 LGVN 485


>gi|161615902|ref|YP_001589868.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167993467|ref|ZP_02574561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231064|ref|ZP_02656122.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168261881|ref|ZP_02683854.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168820305|ref|ZP_02832305.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194471810|ref|ZP_03077794.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197247516|ref|YP_002147882.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197262698|ref|ZP_03162772.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|238909751|ref|ZP_04653588.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|189030094|sp|A9N2I4|XNI_SALPB RecName: Full=Protein Xni
 gi|226733931|sp|B5F4R7|XNI_SALA4 RecName: Full=Protein Xni
 gi|269849497|sp|Q8ZMC9|XNI_SALTY RecName: Full=Protein Xni
 gi|161365266|gb|ABX69034.1| hypothetical protein SPAB_03696 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194458174|gb|EDX47013.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197211219|gb|ACH48616.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240953|gb|EDY23573.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205328455|gb|EDZ15219.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205334446|gb|EDZ21210.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342928|gb|EDZ29692.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349043|gb|EDZ35674.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|312913993|dbj|BAJ37967.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087397|emb|CBY97162.1| 5'-3' exonuclease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321225653|gb|EFX50707.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 251

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|323941520|gb|EGB37702.1| 5'-3' exonuclease [Escherichia coli E482]
          Length = 251

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSRGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|118469848|ref|YP_888174.1| 5'-3' exonuclease [Mycobacterium smegmatis str. MC2 155]
 gi|118171135|gb|ABK72031.1| 5'-3' exonuclease [Mycobacterium smegmatis str. MC2 155]
          Length = 338

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 149/317 (47%), Gaps = 34/317 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG+S  +R+++  P   +  DG PVNA+ GF + +  L+   +   +        
Sbjct: 23  PILLLDGASMWFRSYFGVPSSIKAPDGRPVNAVRGFIDAISTLVTREKPRRLVVCRD--- 79

Query: 66  DYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           D     +R ++ P YKA+R             ++P+ L PQ+ ++     AFGIP     
Sbjct: 80  DDWRPQWRVDLIPSYKAHRVAEPEPDGVPDIEEVPDDLTPQVNMILELLDAFGIPTAGAA 139

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--------DTVKEEKIDI 165
           GFEADD++ T +  A +E   V ++S D+DL+QLV                  K  K   
Sbjct: 140 GFEADDVLGTLS--AREERDPVVVVSGDRDLLQLVRDEPAPQVRVLYLGRGLAKATKWGP 197

Query: 166 EHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
             V +++G+P ++       L  L GD  D +PG+ GIG KTAA LL ++G+L+NIL  A
Sbjct: 198 AEVAEQYGVPLDRAGTAYAELALLRGDPSDGLPGVAGIGEKTAASLLAKHGSLQNILDAA 257

Query: 222 SRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFL 276
              K    K  R  +L   +    +  +V + TD P+T   P + L L   +  R+    
Sbjct: 258 HDPKSGLSKAHRTKLLGAVDYIAAAETVVRVATDAPVTFSTPTDTLPLAAGDPARVAELA 317

Query: 277 KALEFTKLINRVATTYD 293
            A   +  I+R+ T  D
Sbjct: 318 AAYGVSSSISRLQTALD 334


>gi|200388894|ref|ZP_03215506.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605992|gb|EDZ04537.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 251

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKW-RKKLETHREMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|301325747|ref|ZP_07219199.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 78-1]
 gi|300847446|gb|EFK75206.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 78-1]
          Length = 251

 Score =  229 bits (585), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 128/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G  +       L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPYVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|320173217|gb|EFW48427.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
          Length = 251

 Score =  229 bits (585), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHSVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|332087539|gb|EGI92667.1| exonuclease xni [Shigella boydii 5216-82]
          Length = 251

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPCIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLEPHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|194445551|ref|YP_002042222.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|226733936|sp|B4T4W5|XNI_SALNS RecName: Full=Protein Xni
 gi|194404214|gb|ACF64436.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 251

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHPDEVPEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|323154845|gb|EFZ41038.1| exonuclease xni [Escherichia coli EPECa14]
          Length = 251

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++GI P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGIQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|224584760|ref|YP_002638558.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|254799413|sp|C0PXF9|XNI_SALPC RecName: Full=Protein Xni
 gi|269849493|sp|Q57KE5|XNI_SALCH RecName: Full=Protein Xni
 gi|224469287|gb|ACN47117.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 251

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +  ++ +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDKVPEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|327251538|gb|EGE63224.1| exonuclease xni [Escherichia coli STEC_7v]
          Length = 251

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
            T      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 TTLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLEMHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper]
 gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper]
          Length = 609

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 126/609 (20%), Positives = 245/609 (40%), Gaps = 83/609 (13%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
                 T  ++ +              +    ++       L V       G        
Sbjct: 38  LGLDTETTGLNIYQDD-----FGIRLIQFGNPWESWV----LPVERGGVFVGA---AATA 85

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR----GFEDIMLMSYVLDS-----G 499
           L  +++F        + HN  +D  V+ R  G+ M       ED  + S+++D      G
Sbjct: 86  LQKVQRF--------VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEG 137

Query: 500 RSSHDIASIAQKWLSYTRKEILKS------RKSSIPIDKI------SDSQVQEHAIENSN 547
            + H +  + + ++     E +K+      +K     DKI       D   + +A  +  
Sbjct: 138 GTGHKLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYAGMD-- 195

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            IL   LL +   +V +  H     +  + +V+S +E TG  +D D  +++S ++ +   
Sbjct: 196 TILVSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSEDMLRK-A 254

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
                +   +    +++S ++L D L  +       +T T + +  A+ LE +    N +
Sbjct: 255 EHYTAVARYAYGVDSVNSTEKLADGL-ERTGVKIKGRTATNKRQVNAELLEALAEEGNAL 313

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            K  +E ++    + T+  +     +    RVH   +     TGR+++  P+ QN+P   
Sbjct: 314 AKAAIEAKKWGSWEKTWVRNFIERRDA-NDRVHPGINPLQARTGRMSTSNPSAQNLPSGD 372

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                +RR F++ P + + S DY   ELR+LA ++    + + FE   D+H++ A +  G
Sbjct: 373 ---WMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTMLRAFEEESDLHQVTA-DAAG 428

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           V+        R+  K  NF + YG    +LAT   I   EA   ++ +   +PG+    +
Sbjct: 429 VD--------RKIGKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYPGVDTLNK 480

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
           + +      G++ T  GRR+  D   +           +A+N  IQ S+ D+T  A++ +
Sbjct: 481 RMQQEAGSAGFITTPTGRRLPVDPDRA----------YSALNYLIQSSSRDVTGAAVLRL 530

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H    +      M L +HDE++  +PE +   A + +   ME+          P+ VN  
Sbjct: 531 H----EAGFTPNMRLVVHDEVLLSLPEADAEAAVKEVGQIMEQRIG-------PVLVNTD 579

Query: 968 ---VSNNWQ 973
                 +W 
Sbjct: 580 PEVTGKSWG 588


>gi|167550159|ref|ZP_02343916.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205324757|gb|EDZ12596.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 251

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYTHLDEVPEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|283786498|ref|YP_003366363.1| Uncharacterised exonuclease xni [Citrobacter rodentium ICC168]
 gi|282949952|emb|CBG89580.1| Uncharacterised exonuclease xni [Citrobacter rodentium ICC168]
          Length = 257

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 25/272 (9%)

Query: 1   MQKEN----HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRK 54
           M +EN    HL +VD  + I R                  A+ G          L+    
Sbjct: 1   MLRENTVAVHLLIVDALNLIRRIH----------------AVQGSPCVETCQHALEQLIL 44

Query: 55  ESIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
            S  +H   +FD  A    +R++   DYKA RP +P+ L  ++P +R A +  G+     
Sbjct: 45  HSQPTHAVAVFDDEARNSSWRHQRLADYKAGRPPMPDELQQEMPSLRAAFEQRGVACWMS 104

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
            G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++
Sbjct: 105 SGNEADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIAKEF 164

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P+++     L G S   +PG+ GIG K+A  LL ++  LE++  N + + +K  R  
Sbjct: 165 GVSPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLAQFQTLEDLYANIAAVPEKW-RNK 223

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           +  + E A L R +  L+TD+ +   L+ L L
Sbjct: 224 LETHKEMAFLCRDIARLQTDLHLDGNLQQLRL 255


>gi|300936283|ref|ZP_07151216.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 21-1]
 gi|300458608|gb|EFK22101.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 21-1]
          Length = 251

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRSAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFLSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|218701515|ref|YP_002409144.1| exonuclease IX [Escherichia coli IAI39]
 gi|218371501|emb|CAR19339.1| exonuclease IX (5'-3' exonuclease) [Escherichia coli IAI39]
          Length = 281

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 34  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 77

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP + E L  ++P +R A +  G+P     G EADD+ 
Sbjct: 78  VFDDENRSSGWRHQRLPDYKAGRPPMQEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 137

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 138 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 197

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 198 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 256

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 257 LCRDIARLQTDLHIDGNLQQLRL 279


>gi|119475842|ref|ZP_01616194.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2143]
 gi|119450469|gb|EAW31703.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2143]
          Length = 297

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 157/295 (53%), Gaps = 15/295 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   ++L+D S +I+RA+Y  P      +G  VNA+ G+   L K L +S+ +    +
Sbjct: 1   MTE--TVYLIDASIYIFRAYYGIPDEWHDSNGNSVNALFGYTQFLLKFLTSSQPQ----Y 54

Query: 61  FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV +D      FRN+IYP YK +R    E L  QL   +  T+ FGI ++    +EADD
Sbjct: 55  LAVAYDESLGSCFRNDIYPAYKKSRNLPDESLSYQLTACKGLTEIFGISSLASDRYEADD 114

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           IIAT    A+++G  + ++S DKDL QL+   +  L+D   + KID +     +G+ PE+
Sbjct: 115 IIATLAGRAQRDGHNIVVVSKDKDLGQLLLKESDYLWDFAGDRKIDRDMFHGHFGVWPEQ 174

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------EN 232
           +    AL GDS+D+IPG+PGIG KTA+ LL+++ +++ +L NA  + +   R        
Sbjct: 175 LEDYLALVGDSVDDIPGVPGIGKKTASSLLEKFSSIDRLLHNADGVAESGVRGAAMIINK 234

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           + +Y +   ++++LV L  +VP       L+    +   +  +L      +   R
Sbjct: 235 LEDYRDQMEMAKQLVRLDQNVPFAND-HSLLWCPPSMGVVRDYLDEFGLGQYFQR 288


>gi|255081196|ref|XP_002507820.1| predicted protein [Micromonas sp. RCC299]
 gi|226523096|gb|ACO69078.1| predicted protein [Micromonas sp. RCC299]
          Length = 223

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/233 (39%), Positives = 123/233 (52%), Gaps = 16/233 (6%)

Query: 5   NHLFLVDGSSFIYRAFY-----ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            H+ LVDG S I+R+FY     A PLL+ K  G  V+      + +  +L     E   +
Sbjct: 1   GHVVLVDGMSMIFRSFYGWKNRAEPLLNSK--GEDVSVQYSVAHAILGVL-----ELDPT 53

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H AV FD    TFR+E++ DYKANRP  P  L   +P V    +  G+P +   G EADD
Sbjct: 54  HLAVCFDAKGKTFRHEMFTDYKANRPPTPPELKETIPRVIEMVRRMGVPLLMTSGVEADD 113

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW-GIPPEK 178
           II T    + + G  V+++S DKD  QL+ P       V            ++ G+ P +
Sbjct: 114 IIGTVARRSVERGLHVSVVSPDKDFFQLLGPRLSARGLVP---YTERDFRAEFGGLDPAQ 170

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            V L A+ GDS DNIPG+ GIG KTA  LL EYGN+E  + NA  I+ K+ RE
Sbjct: 171 FVDLLAMVGDSSDNIPGVEGIGPKTAPKLLGEYGNIEGCVANAMEIRNKRVRE 223


>gi|304373271|ref|YP_003856480.1| DNA polymerase I [Mycoplasma hyorhinis HUB-1]
 gi|304309462|gb|ADM21942.1| DNA polymerase I [Mycoplasma hyorhinis HUB-1]
 gi|330723856|gb|AEC46226.1| 5'-3' exonuclease [Mycoplasma hyorhinis MCLD]
          Length = 296

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 142/270 (52%), Gaps = 14/270 (5%)

Query: 5   NHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           N + LVDG+  ++++FYA+            G   NAI  F   L+K+++  +     +H
Sbjct: 3   NRVLLVDGNLLLFKSFYASFNFKGSNMHNSAGQETNAIHTFFLSLFKVIKELK----PTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             + FD  + T R+ ++ +YK  R + P+ L  QL LV+       +   +   FEADD+
Sbjct: 59  IYIAFDKSSQTERHNLFAEYKQGRKQAPDSLFSQLNLVKELLSLANLKWSDDFEFEADDL 118

Query: 121 IATYTYIA--EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIP 175
           IA+  Y    + +   + + S+D+DL+QLVS  T + D  K+        ++  +   + 
Sbjct: 119 IASMNYTFLKQDQNSKIFVFSSDQDLLQLVSNQTYIVDKNKDNSFLIKTADNFFELHNLL 178

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+++   +AL+GDS DNI G+PGIG KTA  L+ ++ N+ENIL N  ++   K ++ ++E
Sbjct: 179 PKQIPDFKALSGDSSDNIKGVPGIGPKTAKSLISQFDNIENILANLDQL-PSKMKQKLIE 237

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE 265
             E   L +KL  L+T+      +  + L+
Sbjct: 238 NKENIILFKKLTTLKTNAKFDFNIADIALK 267


>gi|269849501|sp|Q0T161|XNI_SHIF8 RecName: Full=Protein Xni
 gi|269849502|sp|Q83JW7|XNI_SHIFL RecName: Full=Protein Xni
 gi|313647860|gb|EFS12306.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
 gi|332753652|gb|EGJ84031.1| exonuclease xni [Shigella flexneri K-671]
 gi|332754382|gb|EGJ84748.1| exonuclease xni [Shigella flexneri 2747-71]
 gi|332765751|gb|EGJ95964.1| exonuclease xni [Shigella flexneri 2930-71]
 gi|332999942|gb|EGK19525.1| exonuclease xni [Shigella flexneri K-218]
 gi|333015332|gb|EGK34673.1| exonuclease xni [Shigella flexneri K-304]
          Length = 251

 Score =  229 bits (583), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 128/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA+RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKADRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|168236020|ref|ZP_02661078.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737620|ref|YP_002115923.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|226733938|sp|B4TUJ1|XNI_SALSV RecName: Full=Protein Xni
 gi|194713122|gb|ACF92343.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197290862|gb|EDY30216.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322614219|gb|EFY11151.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620966|gb|EFY17824.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624029|gb|EFY20863.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628231|gb|EFY25020.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633350|gb|EFY30092.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636072|gb|EFY32780.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639409|gb|EFY36097.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322643728|gb|EFY40280.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648841|gb|EFY45288.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655166|gb|EFY51476.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658003|gb|EFY54271.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664105|gb|EFY60304.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667073|gb|EFY63245.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673122|gb|EFY69229.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677887|gb|EFY73950.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681062|gb|EFY77095.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685658|gb|EFY81652.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194797|gb|EFZ79984.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196548|gb|EFZ81696.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323205038|gb|EFZ90021.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207760|gb|EFZ92706.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212687|gb|EFZ97504.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323214829|gb|EFZ99577.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222559|gb|EGA06924.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226438|gb|EGA10646.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230682|gb|EGA14800.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234967|gb|EGA19053.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239005|gb|EGA23055.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244637|gb|EGA28643.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247252|gb|EGA31218.1| flap endonuclease-like protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251785|gb|EGA35650.1| flap endonuclease-like protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257472|gb|EGA41162.1| flap endonuclease-like protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263257|gb|EGA46794.1| exonuclease IX [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267508|gb|EGA50992.1| flap endonuclease-like protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269088|gb|EGA52543.1| flap endonuclease-like protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 251

 Score =  229 bits (583), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+ P ++  
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKW-RKKLEMHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|330003161|ref|ZP_08304540.1| 5'-3' exonuclease, SAM domain protein [Klebsiella sp. MS 92-3]
 gi|328537044|gb|EGF63328.1| 5'-3' exonuclease, SAM domain protein [Klebsiella sp. MS 92-3]
          Length = 251

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 128/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G    +     L+     S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVDTCLHALEQLIVHSQPTHAVA 47

Query: 64  IFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    A  +R++  P+YKA R  +PE L+ ++P +R A +  GI      G EADD+ 
Sbjct: 48  VFDDEDRAHGWRHQRLPEYKAGRAPMPETLVAEMPTLRAAFEQRGIRCWASPGSEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   +  ++G+ PE++  
Sbjct: 108 ATLAVKVAQAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAPFIASEFGVTPEQLAD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+AA LL E+ +LE +    + + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSAAQLLNEFQDLEGLYARLAEVPEKW-RKKLAAHQEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
             R++  L+TD+ +   L+ L L
Sbjct: 227 TCREVARLQTDLQLDGNLQQLRL 249


>gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem]
 gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem]
          Length = 608

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 124/531 (23%), Positives = 228/531 (42%), Gaps = 57/531 (10%)

Query: 465 IGHNIKYDKLVLHR-YGISMR----GFEDIMLMSYVLDS-----GRSSHDIASIAQKWLS 514
           + HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++ 
Sbjct: 93  VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYID 152

Query: 515 YTRKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
               E +K+      +K     DKI       D   + +A  +   IL   LL +   +V
Sbjct: 153 PVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYAGMD--TILVSRLLGKVAPLV 210

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +  H     +  + +V+S +E TG  +D D  +++SA++ +        +   +    +
Sbjct: 211 PESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRK-AEHYTAVARYAYGVDS 269

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++S ++L D L  +       +T TG+ +  A+ LE +    N + K  +E ++    + 
Sbjct: 270 VNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEK 328

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           T+  +     +    RVH   +     TGR+++  P+ QN+P        +RR F++ P 
Sbjct: 329 TWVRNFIERRDADD-RVHPGINPLQARTGRMSTSNPSAQNLPSGD---WMVRRCFLADPG 384

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           + ++S DY   ELR+LA +A    + + FE   D+H++ A           +   R+  K
Sbjct: 385 QLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTA---------DAAGMDRKVGK 435

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             NF  +YG    +LAT   I   EA   +  +   +PG+ +  +  +      GYV T 
Sbjct: 436 MANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTDLSKSLQREAANLGYVVTP 495

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GRR+  D               AA+N  +Q ++ D+T  A++ +H    D  L   + L
Sbjct: 496 TGRRLPVDPDR----------GYAALNYMVQSTSRDVTASAVLRLH----DAGLTPMIRL 541

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            IHDE++  VPE E    ++ I   ME+     +    P    +    +W 
Sbjct: 542 VIHDEVLASVPEAEAEVTAKEIGRIMEQTFRGVLINTDP---EVG-GRSWG 588


>gi|24421685|gb|AAN60992.1| Unknown protein [Oryza sativa Japonica Group]
          Length = 443

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 93/333 (27%), Positives = 160/333 (48%), Gaps = 57/333 (17%)

Query: 3   KENHLFLVDGSSFIYRAFYAT--------------------PLLSRKHDGLPVNA----- 37
            ++ + LVDG+S +YR++Y                       LL +   G   +A     
Sbjct: 89  SKSRIMLVDGTSVMYRSYYKILGKCFLILFVTSVLVYYVWLLLLIKLQHGQLEHADGNGD 148

Query: 38  -IAGFCNMLWKLLQNSRKESIASHFAVIFDY-------------------PAVTFRNEIY 77
            +      L  +L     E I SH AV+FD+                     +TFR+ +Y
Sbjct: 149 WVLTIFKALSLVLDML--EFIPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLY 206

Query: 78  PDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTI 137
           P YK+NR   P+ ++  +  ++ + +A  I  IE+ G EADD+I T    +   G+ V I
Sbjct: 207 PSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRI 266

Query: 138 ISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDN 192
           +S DKD  Q++SP+  L              +E  +K++G + P + V + AL+GD  DN
Sbjct: 267 VSPDKDFFQILSPSLRLLRIAPRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADN 326

Query: 193 IPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTD 252
           IPG+ GIG   A  L+ ++G+LEN+L +   +++++ ++ ++  +E A L + L  LR+D
Sbjct: 327 IPGVEGIGDINAVKLITKFGSLENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSD 386

Query: 253 VP---ITIPLEHLILEDC--NGPRLISFLKALE 280
           +P   +      L+ +    +G + I  L+ALE
Sbjct: 387 LPSYMVPFKTSDLVFQKPKDDGAKFIKLLRALE 419


>gi|157962794|ref|YP_001502828.1| exonuclease IX [Shewanella pealeana ATCC 700345]
 gi|189030097|sp|A8H6V6|XNI_SHEPA RecName: Full=Protein Xni
 gi|157847794|gb|ABV88293.1| 5'-3' exonuclease [Shewanella pealeana ATCC 700345]
          Length = 256

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 17/269 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA---IAGFCNMLWKLLQNSRKESIASHF 61
           N L ++DG + + R   A P  S             + G C  L K         I +H 
Sbjct: 2   NKLLIIDGMNLVRRIHAAQPNESDI-----TGLKERVHGACRKLLKY-------HIPTHA 49

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A+++D  A+++R  ++PDYK  R  +PE L   L  ++       I +++    EADD+I
Sbjct: 50  AIVWDGDAISWRKTLFPDYKKGRKPMPEALANGLNDIKAYLAEHHIHSVDADS-EADDVI 108

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT             I+STDK   QL  P   L+D   +  + IE + KK GI   +++ 
Sbjct: 109 ATLATKLVNIDGEAIIVSTDKGFSQLNHPKIKLWDHFNQTYLTIEEMEKKLGIERSQLID 168

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GDS + IPG+PGIG K+A  LL+ Y +L +I  +  ++   K+ + +    + AR
Sbjct: 169 YLALAGDSGNKIPGVPGIGPKSAVELLRIYRSLASIYNSIDKV-GAKQAKKLEAGKQMAR 227

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           LS KLV L+TD+P+++ L+   ++  +  
Sbjct: 228 LSYKLVQLKTDMPLSVNLKQFRIKKPDSE 256


>gi|152971671|ref|YP_001336780.1| exonuclease IX [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206578924|ref|YP_002236839.1| exodeoxyribonuclease-9 [Klebsiella pneumoniae 342]
 gi|238896270|ref|YP_002921006.1| exonuclease IX [Klebsiella pneumoniae NTUH-K2044]
 gi|262041553|ref|ZP_06014750.1| exodeoxyribonuclease IX [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288933787|ref|YP_003437846.1| 5'-3' exonuclease, SAM-fold domain protein [Klebsiella variicola
           At-22]
 gi|290511133|ref|ZP_06550502.1| exonuclease IX [Klebsiella sp. 1_1_55]
 gi|166918965|sp|A6TD79|XNI_KLEP7 RecName: Full=Protein Xni
 gi|226733930|sp|B5XUZ0|XNI_KLEP3 RecName: Full=Protein Xni
 gi|150956520|gb|ABR78550.1| exonuclease IX [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206567982|gb|ACI09758.1| exodeoxyribonuclease-9 [Klebsiella pneumoniae 342]
 gi|238548588|dbj|BAH64939.1| exonuclease IX [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259041114|gb|EEW42188.1| exodeoxyribonuclease IX [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888516|gb|ADC56834.1| 5'-3' exonuclease, SAM-fold domain protein [Klebsiella variicola
           At-22]
 gi|289776126|gb|EFD84125.1| exonuclease IX [Klebsiella sp. 1_1_55]
          Length = 251

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 128/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G    +     L+     S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVDTCLHALEQLIVHSQPTHAVA 47

Query: 64  IFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    A  +R++  P+YKA R  +PE L+ ++P +R A +  GI      G EADD+ 
Sbjct: 48  VFDDEDRAHGWRHQRLPEYKAGRAPMPETLVAEMPALRAAFEQRGIRCWASPGSEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   +  ++G+ PE++  
Sbjct: 108 ATLAVKVAQAGHQATIVSTDKGYCQLLSPTIRIRDYFQKRWLDAPFIASEFGVTPEQLAD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+AA LL E+ +LE +    + + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSAAQLLNEFQDLEGLYARLAEVPEKW-RKKLAAHQEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
             R++  L+TD+ +   L+ L L
Sbjct: 227 TCREVARLQTDLQLDGNLQQLRL 249


>gi|297195391|ref|ZP_06912789.1| 5'-3' exonuclease [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152763|gb|EDY63147.2| 5'-3' exonuclease [Streptomyces pristinaespiralis ATCC 25486]
          Length = 306

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 143/312 (45%), Gaps = 28/312 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   L L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+Q+ R + + + 
Sbjct: 1   MTR--RLMLLDTASLYFRAYHGVPDSVRAPDGTPVNAVRGLIDFIARLVQDHRPDDLVAC 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPA 109
           +   +      +R ++ P YKA+R            ++P+ L PQ+P++     A GI  
Sbjct: 59  WDNDW---RPQWRVDLIPSYKAHRVAAEHDQGPDEEEVPDTLTPQIPVIEAVLAAVGIAR 115

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKI 163
           +   G+EADDII T T  A      V I++ D+DL QLV       +   +K     +  
Sbjct: 116 VGADGYEADDIIGTLTARAT---GPVDIVTGDRDLFQLVDDARERRVLYPLKGVGTLQTT 172

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D   + +++G+     V L  L GD  D +PG+PGIG KTAA LL  YG+L+ I+     
Sbjct: 173 DEAWLRERYGVDGPGYVDLALLRGDPSDGLPGVPGIGEKTAAKLLDTYGDLDGIMAAVGD 232

Query: 224 IKQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
              K    +R  + E      ++ K+V + +DV +      L     +   L    +   
Sbjct: 233 RGSKLTPTQRRRLDEARAYVAVAPKVVRVASDVALPEFDAALPGAPRDPVALDRLTEQWG 292

Query: 281 FTKLINRVATTY 292
               + R+    
Sbjct: 293 LGGAVVRLLNAL 304


>gi|26553652|ref|NP_757586.1| DNA polymerase I: 5'-3' exonuclease [Mycoplasma penetrans HF-2]
 gi|26453658|dbj|BAC43990.1| DNA polymerase I: 5'-3' exonuclease [Mycoplasma penetrans HF-2]
          Length = 292

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 138/298 (46%), Gaps = 14/298 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+K+    L+DG+S ++RA+Y T        K++  P NAI     +++KLL  +  +  
Sbjct: 1   MKKKA--ILIDGNSLMFRAYYGTINQVDYYIKNNLEPTNAIKTMMLIIFKLLTTNNYD-- 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +  + FD+    FR E   DYK  R K P+ L+ Q+  ++     FG+    + G EA
Sbjct: 57  --YAVIAFDHKDKNFRKEELEDYKGTRKKTPDHLISQIEPIKEIMSYFGLNVYCVSGIEA 114

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK-----W 172
           DD++ + + +         I S+D DL+QLV+    +    K     I +  +      +
Sbjct: 115 DDVVGSASKLLTDNDVYCEIYSSDNDLLQLVNEKANVIQLKKGIDETITYTQENFSNLFY 174

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P ++   + ++GDS DN+PGI G+G KTA  LLQ+Y +LE+I  N   I     +  
Sbjct: 175 GLQPAQIPDYKGISGDSSDNLPGIKGLGNKTAIDLLQKYKSLESIYENLDFITSNSVKTK 234

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +L   E     +KL  +  +      ++    +  +  ++   +    F+     +  
Sbjct: 235 LLAGKEIGLKCKKLATILVNYFDDKKIDEFAFKGMDQEKIKDIINKYHFSGFKKYIGE 292


>gi|218515593|ref|ZP_03512433.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 161

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 97/161 (60%), Positives = 122/161 (75%), Gaps = 3/161 (1%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R AT+AF +P IE +GFEA
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 120

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           DDIIATY   AE  G  VTI+S+DKDLMQLV+P   +YD++
Sbjct: 121 DDIIATYARQAEAVGADVTIVSSDKDLMQLVTPNVHMYDSM 161


>gi|310830967|ref|YP_003966068.1| DNA polymerase I [Paenibacillus polymyxa SC2]
 gi|309250434|gb|ADO60000.1| DNA polymerase I [Paenibacillus polymyxa SC2]
          Length = 347

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 155/348 (44%), Gaps = 66/348 (18%)

Query: 5   NHLFLVDGSSFIYRAFYATPLL-------------SRKH----DGLPVNAIAGFCNMLWK 47
           N L LVDGSS +  +F+AT  L             + K     DG+  N +    + L K
Sbjct: 2   NSLLLVDGSSLLTTSFFATAPLDYQKAKTPEEMAKTSKKLMQVDGVYTNGVYTMIDKLLK 61

Query: 48  LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
           +++N   +    + A+ +D    TFR +IYP+YKANR +    L  Q PL +   +  GI
Sbjct: 62  IIKNQNPK----YLAIAWDLNRQTFRRDIYPEYKANRSETRPELKSQYPLAQEVLKEMGI 117

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKI--- 163
                +G+EADDII T +     E   V I++ D+D +QLV+      Y T K E++   
Sbjct: 118 AQFIYEGYEADDIIGTLSNKMSSE-VPVYILTKDQDALQLVNERVRLWYMTNKAEEMYEQ 176

Query: 164 -----------------DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
                               +V + + + P +++  +A+ GD+ DNIPG+ G+G  +   
Sbjct: 177 VGLNIKEFNLPEKVFEFTPLYVHEFYRVEPIQIIDRKAIEGDTSDNIPGVKGVGESSVVP 236

Query: 207 LLQEYGNLENI---LINASRIKQKKRRENI-----------------LEYAETARLSRKL 246
           LL E+ ++E I   L N   +  K   + +                 L   E+A LS++L
Sbjct: 237 LLNEFKSVEGIFDFLENNDELTVKTMIKELGIKRSPVKLLTQSSDTELVGKESALLSKRL 296

Query: 247 VMLRTDVPI--TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
             +  D+     + LE L L+  N  R     K L F  L++ V +T 
Sbjct: 297 ATIDVDMACMQDVKLEDLYLQ-INEERKKDIFKRLAFNSLLDSVESTQ 343


>gi|291440662|ref|ZP_06580052.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672]
 gi|291343557|gb|EFE70513.1| 5'-3' exonuclease [Streptomyces ghanaensis ATCC 14672]
          Length = 301

 Score =  228 bits (581), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 142/306 (46%), Gaps = 26/306 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   R  DG PVNA+ G  + + +L+++ R   + +     +  
Sbjct: 1   MLLDTASLYFRAYFGVPESVRAPDGTPVNAVRGLLDFIDRLVKDHRPGHLVACMDADW-- 58

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + ++ +E
Sbjct: 59  -RPQWRVELIPSYKAHRVAREQAAGPDEEEVPDTLSPQVPVIEAVLDALGIARVGVERYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIK 170
           ADD+I T+T  AE     V I++ D+DL QLV       +   +K     +  D   + +
Sbjct: 118 ADDVIGTFTARAE---GPVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQVTDEAVLRE 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--- 227
           K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  IL      + K   
Sbjct: 175 KYGVDGRGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGILAAVDDRQAKLTP 234

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +R+ +        ++  +V +  DVP+      L     +   L S          + R
Sbjct: 235 SQRKRLDGARPYLAVAPAVVRVADDVPLPDVDTVLPRAPRDPAALESLAARWGLGGSLQR 294

Query: 288 VATTYD 293
           + TT  
Sbjct: 295 LLTTLS 300


>gi|269849479|sp|B7UHL4|XNI_ECO27 RecName: Full=Protein Xni
          Length = 251

 Score =  228 bits (581), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 128/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N + + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFKSLEGIYENLNAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|297516923|ref|ZP_06935309.1| exonuclease IX [Escherichia coli OP50]
          Length = 251

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 CWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|289811950|ref|ZP_06542579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 172

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 67/172 (38%), Positives = 101/172 (58%), Gaps = 5/172 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
               AEK G  V I + DKD+ QLV+    L +T+    +  + V+ K+G+P
Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVP 172


>gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 930

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 98/290 (33%), Positives = 141/290 (48%), Gaps = 23/290 (7%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIK---------------TDLGQKIRRAFISPPTK 743
           +H  +    T TGRL+ +EPNLQN+P                  D     RR F++    
Sbjct: 631 LHPNFLQEGTDTGRLSCVEPNLQNLPRNGITAAVAGNDAEEDGDDDLLGFRRCFVAAGGC 690

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+S DY QIELR+LAH+     L +    S DIHR +A  +F      VS + R  AK 
Sbjct: 691 VLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP--VSTEERSLAKR 748

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
           + F ++YG  P  LAT + +    A        + FPGI  Y  +     R NG+V T+ 
Sbjct: 749 VVFGVLYGAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVVEEARANGFVRTLS 808

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL--EDHKLATKML 921
           GR  +  +I S   S R+  ER A N+ +QGSAAD+ + AM++V K +     +    +L
Sbjct: 809 GRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLL 868

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
            QIHDE+VF V +E +     ++  +M  A      L VPL V  K  ++
Sbjct: 869 SQIHDEMVFMVRKELLPMVVPLVSSAMSHAM----QLLVPLSVTAKFGDS 914



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 17/171 (9%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            Q         +  ++  L   L  + LL  + R +K +  +++ ++  G+++D   + +
Sbjct: 350 AQCQLAHQVYYLATVYRSLYGLLGSKGLLQAFLRQEKRIALLLALLKYNGMRVDLHEVHR 409

Query: 598 VSAEISKNLLSLEENIYDLS---GEKFNLSSPKQLGDILFTKLKF--------------P 640
                   +         L    GE FN+ S  Q    L+  L+                
Sbjct: 410 YEKSCEAEMAQQRRLASKLVPELGEDFNIQSHDQCRKALYEVLQLGKYLLKSGNGEAVGA 469

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +G     G   +TA+D  +     +     +L +R++SK+  TY + +  +
Sbjct: 470 TGLTVTKGGRLSTAEDTLRALARHHEFPACLLRYRKVSKLMQTYVEGMMGY 520


>gi|269126556|ref|YP_003299926.1| 5'-3' exonuclease [Thermomonospora curvata DSM 43183]
 gi|268311514|gb|ACY97888.1| 5'-3' exonuclease [Thermomonospora curvata DSM 43183]
          Length = 312

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 130/311 (41%), Gaps = 22/311 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M   + L L+D  S  +RAF+  P      DG PVNA+ G  +M+ +L+ +     +   
Sbjct: 1   MAPMDALMLLDTPSLYFRAFFGVPESVTAPDGTPVNAVRGLIDMIARLVADRSPARLVCC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +      FR    P YKA+R       ++P+ L  QLP++    +A G+    + G
Sbjct: 61  MDADW---RPAFRVAALPSYKAHRVAADGGDQVPDALAAQLPIIDAVLEAAGLARAGVPG 117

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT------TCLYDTVKEEKIDIEHV 168
           +EADD+I T        G AV I++ D+DL QLV                  + +  E V
Sbjct: 118 YEADDVIGTLAVRHAAGGGAVDIVTGDRDLFQLVDRRGPIQVLYTARGVRNLQVMGEEEV 177

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS----RI 224
             ++GIP        AL GD  D +PG+PG+G KTAA L+  +G++  IL          
Sbjct: 178 AARYGIPGRAYGEYAALRGDPSDGLPGVPGVGDKTAAALVSRFGSVAGILQALDAGVTEG 237

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDCNGPRLISFLKALEF 281
                R  +    E    +  +V + TD+    +T   + L     +   L +  +    
Sbjct: 238 FPAGSRRRLEAAREYLAAAETVVKVVTDIDAPELTALEDELPRRPRDEQALSALAERWNL 297

Query: 282 TKLINRVATTY 292
              + R+    
Sbjct: 298 GGPVGRLRKAL 308


>gi|317493200|ref|ZP_07951623.1| 5'-3' exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918860|gb|EFV40196.1| 5'-3' exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 250

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 87/262 (33%), Positives = 136/262 (51%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R  +A         G P   +    + L +LL +S+     +H   +F
Sbjct: 4   HLLIIDALNLIRRI-HAV-------QGSP--CVVACQHALQQLLAHSQ----PTHAVAVF 49

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R++  PDYKA R  +PE L  ++P +R A    G+ +    G EADD+ AT
Sbjct: 50  DEDDRDNSWRHQALPDYKAGRSAMPENLATEMPAIREAFAKLGVQSWHSAGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             +     G  VTI+STDK   QL++PT  + D  ++  +D+  V K++G+ PE++    
Sbjct: 110 LAHKIALTGHQVTIVSTDKGYCQLLAPTIQIRDYFQKRWLDLPFVKKEFGVEPEQLTDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   I GIPGIG K AA LL E+G+L  I      +  K  R+ + E+ E A L 
Sbjct: 170 GLAGISSSKISGIPGIGPKAAATLLNEFGSLSAIFEQIENVPSKW-RKKLEEHREQAELC 228

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           +K+  L+T++ I+  L+ L L 
Sbjct: 229 KKVATLQTNLTISGNLQQLRLP 250


>gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 201

 Score =  228 bits (580), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 120/201 (59%), Positives = 149/201 (74%), Gaps = 4/201 (1%)

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
            D+LP +++  T+RVHT YSLAST TGRL+S EPNLQNIP++T  G+KIR AFIS P  K
Sbjct: 1   TDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHK 60

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           LISADYSQIELR+LAH+A+I  L + FE+ +DIH M A+E+FGV +E +  ++RR AK I
Sbjct: 61  LISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAI 120

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
           NF IIYGIS F LA QL I RSEA DYIK+YF RFPGI +Y+E  K   R  GYVETIFG
Sbjct: 121 NFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFG 180

Query: 865 RRIHYDEINSPKSSIRNINER 885
           RRI+Y    S    ++++  R
Sbjct: 181 RRINY----SRNPLVQSLRAR 197


>gi|284931594|gb|ADC31532.1| 5'-3' exonuclease [Mycoplasma gallisepticum str. F]
          Length = 288

 Score =  228 bits (580), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 151/292 (51%), Gaps = 13/292 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLL---SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+      ++DG+S ++RAFYAT  +   + K+   P N I     M+ K+L + + +  
Sbjct: 1   MKSTKKALIIDGNSLVFRAFYATLSMYEYAIKNGIRPSNGIKTSLKMINKILNSDQYD-- 58

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +  V FD    T R +IY  YKA R K  E L+ QL  ++      G+  +   G EA
Sbjct: 59  --YALVAFDSKEKTDRAKIYEGYKATRKKPVEGLIEQLVALQDGFSYLGLNVLSSPGIEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I +++ +A K+     I ++D+D+ QLV+    +Y  VK      ++   +  + + 
Sbjct: 117 DDLIGSFSALANKDQITCHIYTSDQDIFQLVNKYNVVYQFVKGVSVFNQVHERNFQEHFH 176

Query: 174 -IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            + PE ++  +AL GDS DNIPG+ GIG KTA  L+++Y N++NI  N  +IK    ++ 
Sbjct: 177 DLKPEDVIQYKALVGDSSDNIPGVKGIGEKTAVQLIKDYLNIDNIYANLDQIKPS-IKDK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           ++       LS++L  +RTD  +   + +  L+  +     +F +  + + L
Sbjct: 236 LVANKANCYLSKELATIRTDCLVDQDINNFKLKPLDQQNYFAFCEYYKISHL 287


>gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole]
          Length = 609

 Score =  228 bits (580), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 122/534 (22%), Positives = 231/534 (43%), Gaps = 63/534 (11%)

Query: 465 IGHNIKYDKLVLHR-YGISMR----GFEDIMLMSYVLDS-----GRSSHDIASIAQKWLS 514
           + HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++ 
Sbjct: 93  VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYID 152

Query: 515 YTRKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
               E +K+      +K     DKI       D   + +A  +   IL   LL +   +V
Sbjct: 153 PVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYAGMD--TILVSRLLGKVAPLV 210

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +  H     +  + +V+S +E TG  +D D  +++SA++ +            +    +
Sbjct: 211 PESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR-YAYGVDS 269

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++S ++L D L  +       +T TG+ +  A+ LE +    N + K  +E ++    + 
Sbjct: 270 VNSTEKLADGL-ERTGVKIKGRTTTGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEK 328

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           T+  +     +    RVH   +     TGR+++  P+ QN+P        +RR F++ P 
Sbjct: 329 TWVRNFIERRDA-NDRVHPGINPLQARTGRMSTSNPSAQNLPSGD---WMVRRCFLADPG 384

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           + + S DY   ELR+LA ++    + + FE   D+H++ A +  GV+        R+  K
Sbjct: 385 QIIASVDYRAQELRVLAALSGDQTMLRAFEEESDLHQVTA-DAAGVD--------RKIGK 435

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             NF + YG    +LAT   I   EA   ++ +   +PG+    ++ +      G++ T 
Sbjct: 436 MANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYPGVDTLNKRMQQEAGSAGFITTP 495

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GRR+  D   +           +A+N  IQ S+ D+T  A++ +H    +      M L
Sbjct: 496 TGRRLPVDPDRA----------YSALNYLIQSSSRDVTGAAVLRLH----EAGFTPNMRL 541

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK---VSNNWQ 973
            +HDE++  +PE +   A + +   ME+          P+ VN        +W 
Sbjct: 542 VVHDEVLLSLPEADAEAAVKEVGQIMEQRIG-------PVLVNTDPEVTGKSWG 588


>gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
 gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 119/545 (21%), Positives = 214/545 (39%), Gaps = 83/545 (15%)

Query: 450 LSYLKKFFE----NEHFLKIGHN-IKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRS 501
           ++ L+  FE    +     +  +  +    +L  +       R    I     +L +G  
Sbjct: 106 VAALRPLFEAREPDARPPYVVFDDAQRALTILAEHLPEAAWPRRRGCIKTAETLLAAGAD 165

Query: 502 SH----DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
            H     +    +++L +   +    +  +  + +     + E     +  IL L     
Sbjct: 166 RHRDHRPLERSVREFLGHELPD----QALTGLLGRAGAKTLHERLAAEAETILALMRRFT 221

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
           P+L   +L  VY+  +  ++  V  ME  GI +D    ++V+    +   SL+       
Sbjct: 222 PQLRERRLAGVYQ-FECDLLTPVVAMERAGIGLDAPGFERVAGGWVRERRSLD------- 273

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
                                      T + +   + +D E                 +L
Sbjct: 274 ---------------------------TASAEPGESEEDFEARVAA---------RAARL 297

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            K+ STY     + ++   +R+       +  +GR +  EPNLQ +P +      +R  F
Sbjct: 298 DKLVSTYRWWARDFVDAD-RRIRCRLHPLAADSGRFSCTEPNLQQVPSEYT-APGLRACF 355

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
           +  P  +LI ADY+QIELR+ AH+A    L  VF    D HR  AA + G    +V    
Sbjct: 356 VPAPGHRLIVADYAQIELRVAAHLAPCDALGAVFRAGRDPHRATAATLTGKPEPEVESHE 415

Query: 798 RRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           R+ AK +NF  ++G+   R          L +   +AA+  + +F  FPGI  +  +   
Sbjct: 416 RKLAKAVNFGFLFGMGARRFRSYAASGYGLDLDERQAAEAREAFFRTFPGIAAWHRRVGA 475

Query: 852 FVRQN----GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             R+       V T  GRR  +             +  AA+N P+QG+AA+  + AMI +
Sbjct: 476 LSRRGDHEAITVTTAMGRRKTFPAGR--------FSFNAALNIPVQGTAAEGFKAAMIRL 527

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H+ L    +  + +L +HDE + EVPE        ++   M  A    ++  VP+ V  +
Sbjct: 528 HRELPS--IGGRGVLVVHDEYLAEVPEARAEEGKAMVEAHMIAAMGELVH-TVPIVVEAE 584

Query: 968 VSNNW 972
           ++ +W
Sbjct: 585 IAAHW 589


>gi|115304357|ref|YP_762649.1| DNA polymerase [Cyanophage Pf-WMP4]
 gi|110559071|gb|ABG75891.1| DNA polymerase [Phormidium phage P4]
 gi|113201851|gb|ABI33163.1| PfWMP4_19 [Phormidium phage Pf-WMP4]
          Length = 630

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 115/595 (19%), Positives = 222/595 (37%), Gaps = 74/595 (12%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG--FEDIMLMSYVLDSGRSSHDIA 506
             + L+K   +   + +  N  YD  VL  +G+ +    + D M++++ ++  +  + + 
Sbjct: 42  AAAVLEKLLTDPDVIFVIQNAAYDVWVLRHHGVDIPPGRYVDTMVLAHCVNPQQGDYSLE 101

Query: 507 S----IAQKWLSYTRK----EILKSRKSSIPIDKISDSQVQE-HAIENSNVILQLWLLLR 557
           S    +  + + Y  +     + +  K    +  +  + + E + +++  + L+ W  L 
Sbjct: 102 SYGRSVDDEKVDYRTEMVRAGLWEGGKEDPSVYDVPFNPIMERYGLQDVRLTLKWWGELL 161

Query: 558 PKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS-------- 608
           P L  + +L   Y  +  P ++    +   G+ ID+    + + E+  ++          
Sbjct: 162 PHLERDARLADSYYNIHLPAVETTISLH-GGLYIDRKATLKAATELMGDIEEGYLEFARR 220

Query: 609 -------------LEENIYDLSGEKF----NLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
                         E +I    G+      NL SP  +  +L+     P+  K  TG+  
Sbjct: 221 YPKVYKMKWNDKTKEYDIVMKGGKPVMTAPNLQSPNDMASLLYMMGWVPTEFKRSTGKP- 279

Query: 652 TTAQDLEQINCGDNPIIKNILE----WRQLSKIK--STYADSLPNHINKRTQRVHTFYSL 705
            T+QD+ ++   D+     + E     + L  +         L   ++ +   V   +  
Sbjct: 280 VTSQDVLKLLIADDETPPKLKECATFVQSLRSLVGIQNQLMQLLELVDDKGF-VKGNWYQ 338

Query: 706 ASTMTGRLASLEPNLQNIPIKT-DLGQKIRRAFISPPTKKLISADYSQIELRILAH---- 760
             T T R +S  PN+QN   +    G+++R  F  PP   +   D SQIEL I+A     
Sbjct: 339 TGTQTFRYSSSSPNMQNFSTRHPKWGKRVRECFTPPPGYVMFMGDLSQIELAIVAWYLEI 398

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIE---KVSPQMRRHAKTINFSIIYGISPFRL 817
           +A  + + +      D H +     +GV  E       Q R  AK   F+  YG    RL
Sbjct: 399 LAGDSAMAEGNRQGRDAHDVNTENWYGVTRESNPDEFKQCRPRAKNGAFAANYGAKYRRL 458

Query: 818 ATQLRIPRSEAADYIKRYFHR--FPGIHEYIEKTKNFVR--------------QNGYVET 861
           A  +     EA D ++          + + +  T    R                G++  
Sbjct: 459 AFTIGCSFEEAKDILETVERATQITPLKQLVWDTMRQSRDVLPVQVPYSWRKTTKGFLYD 518

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED-HKLATKM 920
               R+ Y  I+S +   R  +ER A NA  QG  A I R+        ++        +
Sbjct: 519 CLNTRLFYPGIDSKERYERESSERKAFNALAQGGCASILRKLCNQSLPYIQAGEGWFAGL 578

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
              +HDE +  V E+        +        LP     V ++   K+ N+W ++
Sbjct: 579 ---VHDEAIGYVKEQYADETIIHLNREWNSLTLPSPQGGVFVRAEFKIVNSWSDK 630


>gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon]
 gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon]
          Length = 609

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 121/536 (22%), Positives = 231/536 (43%), Gaps = 63/536 (11%)

Query: 463 LKIGHNIKYDKLVLHR-YGISMR----GFEDIMLMSYVLDS-----GRSSHDIASIAQKW 512
             + HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + +
Sbjct: 91  KFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFY 150

Query: 513 LSYTRKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKL 560
           +     E +K+      +K     DKI       D   + +A  +   IL   LL +   
Sbjct: 151 IDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYAGMD--TILVSRLLGKVAP 208

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
           +V +  H     +  + +V+S +E TG  +D D  +++SA++ +            +   
Sbjct: 209 LVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR-YAYGV 267

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
            +++S ++L D L  +       +T TG+ +  A+ LE +    N + K  +E ++    
Sbjct: 268 DSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSW 326

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           + T+  +     +    RVH   +     TGR+++  P+ QN+P        +RR F++ 
Sbjct: 327 EKTWVRNFIERRDA-NDRVHPGINPLQARTGRMSTSNPSAQNLPSGD---WMVRRCFLAD 382

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           P + + S DY   ELR+LA ++    + + F+   D+H++ A +  GV+        R+ 
Sbjct: 383 PGQIIASVDYRAQELRVLAALSGDQTMLRAFKEESDLHQVTA-DAAGVD--------RKI 433

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
            K  NF + YG    +LAT   I   EA   ++ +   +PG+    ++ +      G++ 
Sbjct: 434 GKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYPGVDTLNKRMQQEAGSAGFIT 493

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T  GRR+  D   +           +A+N  IQ S+ D+T  A++ +H    +      M
Sbjct: 494 TPTGRRLPVDPDRA----------YSALNYLIQSSSRDVTGAAVLRLH----EAGFTPNM 539

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK---VSNNWQ 973
            L +HDE++  +PE +   A + +   ME+          P+ VN        +W 
Sbjct: 540 RLVVHDEVLLSLPEADAEAAVKEVGQIMEQRIG-------PVLVNTDPEVTGKSWG 588


>gi|159037971|ref|YP_001537224.1| 5'-3' exonuclease [Salinispora arenicola CNS-205]
 gi|157916806|gb|ABV98233.1| 5'-3' exonuclease [Salinispora arenicola CNS-205]
          Length = 353

 Score =  227 bits (579), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 24/300 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            + LVD  S  +RA++  P  +     G PVNA+ GF +ML  L++              
Sbjct: 52  PIMLVDAPSLYFRAYFGIPESAATAPGGQPVNAVRGFLDMLASLIRTRGPGR----MVCA 107

Query: 65  FDYP-AVTFRNEIYPDYKANRPKI------PEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
            D+     +R  + P YKA+R         P+ L PQ+P++     A GI  +   G+EA
Sbjct: 108 MDHDWRPDWRVALLPSYKAHRVAPEGGEVVPDTLSPQVPVILDVLDALGIATVGASGYEA 167

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI------DIEHVIKK 171
           DD++ T +    + G  V ++S D+DL QLV     +        +      D   V  +
Sbjct: 168 DDVLGTLS--VTQPG-PVEVVSGDRDLFQLVDDARGVRLLYIGRGVAKLADCDDTAVRAR 224

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---K 228
           +G+P  +     AL GD  D +PG+PG+G KTAA L+  +G++  +L             
Sbjct: 225 YGVPAARYADFAALRGDPSDGLPGVPGVGEKTAARLVDRHGDISGVLAALDDPGAGFAPG 284

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            R  +    +   ++  +V +  DVP+      L     +  RL+   +       + R+
Sbjct: 285 LRAKLAAARDYLAVAPTVVRVALDVPLPALSTDLPTVPADPDRLLDLAERWNVAGAVRRL 344


>gi|238787248|ref|ZP_04631047.1| Uncharacterized exonuclease xni [Yersinia frederiksenii ATCC 33641]
 gi|238724510|gb|EEQ16151.1| Uncharacterized exonuclease xni [Yersinia frederiksenii ATCC 33641]
          Length = 232

 Score =  227 bits (579), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 3/225 (1%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
            N     LQ     S  +H   +FD    + ++R++  PDYKA R  +P+ L  ++PL+R
Sbjct: 7   INACKHGLQQLISHSQPTHAVAVFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIR 66

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
            A  + G+      G EADD+ AT T      G  VTIISTDK   QL++P   + D  +
Sbjct: 67  EAFISLGVNCWHSPGNEADDLAATLTAKVSSAGHQVTIISTDKGYCQLLAPNVQIRDYFQ 126

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
           +  +D+  V +++G+ P ++     L G S   IPG+ GIG KTAALLLQ+  +LE +  
Sbjct: 127 KRWLDMPFVKQEFGVLPHQLPDYWGLAGISSSKIPGVAGIGAKTAALLLQQANSLEELYQ 186

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
               + +K  R+ + E+ E A + +++  L+TD+P+T  L+ L L
Sbjct: 187 GIDAVPEKW-RKKLQEHREMAFICKQIATLKTDLPLTGNLQQLRL 230


>gi|269138078|ref|YP_003294778.1| exonuclease IX [Edwardsiella tarda EIB202]
 gi|267983738|gb|ACY83567.1| exonuclease IX [Edwardsiella tarda EIB202]
 gi|304558122|gb|ADM40786.1| Exodeoxyribonuclease IX [Edwardsiella tarda FL6-60]
          Length = 253

 Score =  227 bits (579), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 136/263 (51%), Gaps = 17/263 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G    A       L +LL ++      SH   +F
Sbjct: 4   HLLIVDALNLIRRI-HAVQG---SPCGDACGA------ALRQLLGHT----TPSHAVAVF 49

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+   A ++R+++ P YKA R  +P+ L  ++  +R A  A G+      G EADD+ AT
Sbjct: 50  DHDDRAESWRHQLLPGYKAGRQAMPDDLAQEMESLRAAFTALGVACWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             +   + G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ P+++    
Sbjct: 110 LAHKVAQSGHRVTIVSTDKGYCQLLSPQIQIRDYFQKRWLDLPFVQREFGVAPQQLTDFW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G     IPG+ GIG KTAA LL+E+G+LE +    ++   ++ R+ + E  E A + 
Sbjct: 170 GLAGIGSSKIPGVSGIGAKTAAALLKEFGSLETLYQRLAQ-APERWRQRLTEQREMAEIC 228

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           R++  L+TD+ +   L+ L L  
Sbjct: 229 RRVATLQTDLALHGNLQQLRLTG 251


>gi|126435099|ref|YP_001070790.1| 5'-3' exonuclease [Mycobacterium sp. JLS]
 gi|126234899|gb|ABN98299.1| 5'-3' exonuclease [Mycobacterium sp. JLS]
          Length = 316

 Score =  227 bits (579), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 145/316 (45%), Gaps = 32/316 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S  +R+++A P      DG PVNA+ GF + +  L+   R   +        
Sbjct: 4   PLLLLDGASMWFRSYFALPSSITAPDGRPVNAVRGFLDTVAMLIGRERPSRLVVCRD--- 60

Query: 66  DYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           D     +R ++ P YKA+R             +P+ L PQ+ ++     AFGIP     G
Sbjct: 61  DDWRPQWRVDLVPSYKAHRVAEPQAAGTDVEVVPDELTPQVDMIMEMLDAFGIPHAGAPG 120

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC-------LYDTVKEEKIDIEH 167
           +EADD++ T    A +E   V ++S D+D++Q+V                 K        
Sbjct: 121 YEADDVLGTLA--AAEERDRVIVVSGDRDMLQVVRDDPVEVRVLYLGRGMSKATLFGPAE 178

Query: 168 VIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           V  ++ +P E+       L  + GD  D +PG+PG+G KTAA LL ++G+LE I+  A+ 
Sbjct: 179 VADQYAVPKERAGAAYAELALMRGDPSDGLPGVPGVGEKTAATLLAQFGSLEAIVAAAND 238

Query: 224 IK---QKKRRENILEYAETARLSRKLVMLRTDVPITIP--LEHLILEDCNGPRLISFLKA 278
            K    K  R+ +L  A+    +  +V + TD P+T+    + L L   +  ++      
Sbjct: 239 PKSKMSKAYRKKMLAAADYIEAAEPVVRVATDAPVTMSTKTDELPLAAAHPRKVAQLAGD 298

Query: 279 LEFTKLINRVATTYDC 294
           L  T  + R+    D 
Sbjct: 299 LGVTSSVGRLQKALDA 314


>gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley]
 gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley]
          Length = 608

 Score =  227 bits (579), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 130/606 (21%), Positives = 242/606 (39%), Gaps = 77/606 (12%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
                 T  ++ +              +    ++       L V       G        
Sbjct: 38  LGLDTETTGLNIYQDD-----FGIRLIQFGNPWESWV----LPVERGGAFVGAAVTA--- 85

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR----GFEDIMLMSYVLDS-----G 499
           L  +++F        + HN  +D  V+ R  G+ M       ED  + S+++D      G
Sbjct: 86  LQKVQRF--------VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEG 137

Query: 500 RSSHDIASIAQKWLSYTRKEILKS------RKSSIPIDKI------SDSQVQEHAIENSN 547
            + H +  + + ++     E +K+      +K     DKI       D   + +A  +  
Sbjct: 138 GTGHKLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYAGMD-- 195

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            IL   LL +   +V +  H     +  + +V+S +E TG  +D D  +++SA++ +   
Sbjct: 196 TILVSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSE 255

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
                    +    +++S ++L D L  +       +T TG+ +  A+ LE +    N +
Sbjct: 256 HYTAVAR-YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNAL 313

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            K  +E ++    + T+  +     +    RVH   +     T R+++  P+ QN+P   
Sbjct: 314 AKAAIEAKKWGSWEKTWVRNFIERRDA-NDRVHPGINPLQARTARMSTTSPSAQNLPAND 372

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                +RR F++ P + ++S DY   ELR+LA +A    + + FE   D+H++ A     
Sbjct: 373 ---WMVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTA----- 424

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
                 +   R+  K  NF  +YG    +LAT   I   EA   +  +   +PG+ +  +
Sbjct: 425 ----DAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTDLSK 480

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             +      GYV T  GRR+  D               AA+N  +Q ++ D+T  A++ +
Sbjct: 481 SLQREAANLGYVVTPTGRRLPVDPDR----------GYAALNYMVQSTSRDVTASAVLRL 530

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H    D  LA  + L IHDE++  VPE E    ++ I   ME+     +    P    + 
Sbjct: 531 H----DAGLAPMIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQTFRGVLINTDP---EVG 583

Query: 968 VSNNWQ 973
              +W 
Sbjct: 584 -GRSWG 588


>gi|281356102|ref|ZP_06242595.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Victivallis
           vadensis ATCC BAA-548]
 gi|281317471|gb|EFB01492.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Victivallis
           vadensis ATCC BAA-548]
          Length = 323

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 100/294 (34%), Positives = 151/294 (51%), Gaps = 16/294 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  E  L L+D  S I+RAFYA   L+    G P NA+  F     +LL   +KE   S 
Sbjct: 1   MADE--LILIDAYSQIFRAFYAIRQLTNSR-GEPTNAVFVFT----RLLLGIQKEYPTSR 53

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            A++FD   V FR ++ P+YKANRP +PE L  Q+P++R   +AFG P +E   +EADD+
Sbjct: 54  GAMLFDCGKVEFRMKLNPEYKANRPPMPEALRTQIPVIRELAEAFGWPLLEEPEYEADDL 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPP 176
            A +   AE     V IIS+DKDL QLV     +          E+  +  +  K+ +PP
Sbjct: 114 AAAFARAAE---GPVKIISSDKDLAQLVDDRVTMLSPAPRNAGFEERGVAEITAKFQVPP 170

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
             ++   AL GDS DNIPG+PGIG K AA LL  YG     L +  ++   K  + +   
Sbjct: 171 ALLIDYLALLGDSSDNIPGVPGIGAKGAAQLLNTYGPASEWLEHPEKLAGTKFEKKLAGA 230

Query: 237 AETARLSRKLVMLRTDVPITI-PLEH-LILEDCNGPRLISFLKALEFTKLINRV 288
               + +++L+ LR+D+P     L   L   + +  ++    + +E   ++  +
Sbjct: 231 GNILKRNQELIRLRSDLPERFSDLGAVLARREPDWAKIADICRRMELKSILKEL 284


>gi|331684420|ref|ZP_08385012.1| 5-3 exonuclease [Escherichia coli H299]
 gi|331078035|gb|EGI49241.1| 5-3 exonuclease [Escherichia coli H299]
          Length = 251

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 128/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N + + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVVGIGPKSATQLLVEFKSLEGIYENLNAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|156630385|sp|Q8EGP9|XNI_SHEON RecName: Full=Protein Xni
          Length = 261

 Score =  227 bits (578), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +          ++  C  L ++          +H AV+
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDENDMES--LTERVSVACTKLLRI-------HHPTHVAVV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++   Q   I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPDYKKGRKPMPEPLAAGLIALQEHLQNLQIQSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL  P    +D   ++ ++I  + +K G+   + + L A
Sbjct: 112 ATKTAKAQGEALIVSTDKGFSQLNHPRISQWDHFNQQYLNIAELEQKLGVDRSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGIPGIG K+AA LL+ +  L  +  +   +   K+ + + E  + ARLS 
Sbjct: 172 LAGDSGNKIPGIPGIGPKSAAELLRTFRTLATLFSSLPNL-GAKQAKKLAEGRDMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDC 267
           KLV L+TD+P+ I L    +   
Sbjct: 231 KLVQLQTDLPLNINLRDFRVNSP 253


>gi|326331442|ref|ZP_08197732.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
 gi|325950698|gb|EGD42748.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
          Length = 302

 Score =  227 bits (578), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 77/307 (25%), Positives = 141/307 (45%), Gaps = 29/307 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+D +S  +RA++  P + +  DG PVNA+ G    + +L+     +   +     +D
Sbjct: 1   MLLLDTASLYFRAYFGVPEI-KAEDGTPVNAVRGLLEFISRLVN----DYSPTDLVCCWD 55

Query: 67  YP-AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
                 +R ++ P YKA+R            ++P+ L  Q+P++R    A GI  I   G
Sbjct: 56  NDWRPQWRVDLIPSYKAHRVVEELEAAPDVEEVPDPLQVQVPIIREVLAAAGICVIGADG 115

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHV 168
           +EADD+I T    A   G  V +++ D+DL QLV       +    +     + +D + V
Sbjct: 116 YEADDVIGTLATGA---GMPVDVVTGDRDLFQLVDDAAGVRILYPTRGVGDPDLVDEKWV 172

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--- 225
           + K+GI   +      + GD+ D +PG+ G+G KTAA LL++YG+L+ I+   +      
Sbjct: 173 LAKYGISAAQYADFATMRGDTSDGLPGVKGVGEKTAAKLLEQYGDLDGIVAAVADPTTSL 232

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
            K +R+  ++      ++ K+V +  D+ +      L     +  RL         +  +
Sbjct: 233 TKAQRQKFIDAVPYLAVAPKVVAVARDLDLDRSRTALPSAPADPERLRELAATYNLSSPV 292

Query: 286 NRVATTY 292
            R+    
Sbjct: 293 ARLEAAL 299


>gi|124262774|ref|YP_001023244.1| DNA polymerase I [Methylibium petroleiphilum PM1]
 gi|124262020|gb|ABM97009.1| DNA polymerase I [Methylibium petroleiphilum PM1]
          Length = 265

 Score =  227 bits (578), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 86/276 (31%), Positives = 135/276 (48%), Gaps = 13/276 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP--LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M     L L+DG+S + R + A P      + DG    AI    + + + L     E + 
Sbjct: 1   MSTRPKLLLLDGTSVVRRVYEAVPGDDGPARVDG----AITASMHSIKRAL----GEHLP 52

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +HF   FD    T+R+++ P YK+ R  + E L   LP +    ++ G   +   G EAD
Sbjct: 53  THFLAAFDDGGPTWRHQLLPTYKSTRKPMYEGLRAALPRLYRDMESLGFSWVSPPGVEAD 112

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+I T  + A   GF V I+S D D+  L+S    +Y+    E  D   +  + GI P +
Sbjct: 113 DVIGTIAHRAAARGFEVVIVSNDVDMCALLSANVRVYNHFAREWRDETWLASQIGITPAQ 172

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +     L G+   ++PG+ G+G KTAA LL ++G+L+ +L  A+ +   K  E +   AE
Sbjct: 173 VSAYIGLVGEEKKSVPGVAGVGPKTAAKLLAQHGDLDGVLAAAAEMPG-KIGERLRAGAE 231

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274
             RLS+ L  L+ DV ++I    L L   N  RL +
Sbjct: 232 ACRLSQALGTLKLDVDLSIRPSQLAL--PNRNRLAA 265


>gi|229821989|ref|YP_002883515.1| 5'-3' exonuclease [Beutenbergia cavernae DSM 12333]
 gi|229567902|gb|ACQ81753.1| 5'-3' exonuclease [Beutenbergia cavernae DSM 12333]
          Length = 319

 Score =  227 bits (578), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 143/324 (44%), Gaps = 32/324 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L L+D +S  +RAF+  P   R  DG P+ A+ GF   +  LL       + + 
Sbjct: 1   MTSRGSLLLLDSASMYFRAFFGVPDSVRSPDGQPIGAVRGFLEAITLLLTTRSPSRLVAC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPA 109
           +    D     FR    P YKA+R            ++P+ L  Q+P++  A  A GIP 
Sbjct: 61  WD---DDWRPAFRVAAIPSYKAHRVARDVPGTTGEEEVPDALSVQVPVIVEALAAIGIPR 117

Query: 110 IEIQGFEADDIIATYTYIAEKEGFA------VTIISTDKDLMQLVSPT--TCLYDTVKE- 160
           I   G+EADD+I T+  +  + G        V I++ D+DL QLV       +  T +  
Sbjct: 118 IGRPGYEADDVIGTFATL--EAGRPDGERSAVEIVTGDRDLFQLVDDDAPIRVLYTARGM 175

Query: 161 ---EKIDIEHVIKKWGI-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
              + +D+  + +++G+        + AL GD  D +PG+PGIG KTA  LL  YG+L  
Sbjct: 176 RDLDVVDVARLRERYGVASGAAYADMAALRGDPSDGLPGVPGIGEKTAVALLNRYGDLAG 235

Query: 217 ILINASRIKQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
           +L             +R+ + E A    ++  +V +  DVP+ +  + L     +   L 
Sbjct: 236 VLRARDDGDPGLSATQRKRLTEAAGYLDVAPTVVQVARDVPVGVVDDALPTAPADPDALD 295

Query: 274 SFLKALEFTKLINRVATTYDCDAA 297
           +  +       ++R+       AA
Sbjct: 296 ALAERWGLGGAVSRLVEALAARAA 319


>gi|332999551|gb|EGK19136.1| exonuclease xni [Shigella flexneri VA-6]
          Length = 251

 Score =  227 bits (578), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA+RP +PE L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKADRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTLAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|118463818|ref|YP_881611.1| 5'-3' exonuclease [Mycobacterium avium 104]
 gi|118165105|gb|ABK66002.1| 5'-3' exonuclease [Mycobacterium avium 104]
          Length = 313

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 142/315 (45%), Gaps = 33/315 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG+S  +R+++  P      DG PVNA+ GF + L  ++   R   +     + +  
Sbjct: 1   MLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFLDSLAVVITQQRPSRLVVCLDLDW-- 58

Query: 68  PAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               FR ++ P YKA+R             ++P+ L PQ+ ++    +A+GIP    +GF
Sbjct: 59  -RPQFRVDLVPSYKAHRVAEAEPAGEPDVEEVPDDLTPQIDMIAELLEAYGIPTAGAEGF 117

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHV 168
           EADD++ T    A +    V ++S D+DL+Q+VS                K        V
Sbjct: 118 EADDVLGTLA--ARERDDPVVVVSGDRDLLQVVSDDPVPVRVLYLGRGLSKATLFGPVEV 175

Query: 169 IKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            + +G+P ++       L  L GD  D +PG+PG+G KTAA LL ++G+L  +L  A   
Sbjct: 176 AEHYGVPVDRAGPAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLHRVLAAAHDP 235

Query: 225 K---QKKRRENILEYAETARLSRKLVMLRTDVP--ITIPLEHLILEDCNGPRLISFLKAL 279
           K    K  R  +L   +    +  +V + TD P  ++ P + + L   +  R       L
Sbjct: 236 KSKMAKGLRAKLLGALDYIEAAGPVVRVATDAPVKLSTPSDAVPLVAADPQRTAELATEL 295

Query: 280 EFTKLINRVATTYDC 294
                I R+    D 
Sbjct: 296 GVGSSIARLQKALDA 310


>gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5]
 gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5]
          Length = 608

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 129/606 (21%), Positives = 241/606 (39%), Gaps = 77/606 (12%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
                 T  ++ +              +    ++       L V       G        
Sbjct: 38  LGLDTETTGLNIYQDD-----FGIRLIQFGNPWESWV----LPVERGGAFVGAAVTA--- 85

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR----GFEDIMLMSYVLDS-----G 499
           L  +++F        + HN  +D  V+ R  G+ M       ED  + S+++D      G
Sbjct: 86  LQKVQRF--------VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEG 137

Query: 500 RSSHDIASIAQKWLSYTRKEILKS------RKSSIPIDKI------SDSQVQEHAIENSN 547
            + H +  + + ++     E +K+      +K     DKI       D   + +A  +  
Sbjct: 138 GTGHKLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYAGMD-- 195

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            IL   LL +   +V +  H     +  + +V+S +E TG  +D D  +++SA++ +   
Sbjct: 196 TILVSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSE 255

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
                    +    +++S ++L D L  +       +T TG+ +  A+ LE +    N +
Sbjct: 256 HYTAVAR-YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNAL 313

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            K  +E ++    + T+  +     +    RVH   +     T R+++  P+ QN+P   
Sbjct: 314 AKAAIEAKKWGSWEKTWVRNFIERRDA-NDRVHPGINPLQARTARMSTTSPSAQNLPAND 372

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                +RR F++ P + ++S DY   ELR+LA +A    + + FE   D+H++ A     
Sbjct: 373 ---WMVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTA----- 424

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
                 +   R+  K  NF  +YG    +LAT   I   EA   +  +   +PG+ +  +
Sbjct: 425 ----DAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTDLSK 480

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             +      GYV T  GRR+  D               AA+N  +Q ++ D+T  A++ +
Sbjct: 481 SLQREAANLGYVVTPTGRRLPVDPDR----------GYAALNYMVQSTSRDVTASAVLRL 530

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H    D  L   + L IHDE++  VPE E    ++ I   ME+     +    P    + 
Sbjct: 531 H----DAGLTPMIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQTFRGVLINTDP---EVG 583

Query: 968 VSNNWQ 973
              +W 
Sbjct: 584 -GRSWG 588


>gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1257

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/290 (33%), Positives = 140/290 (48%), Gaps = 23/290 (7%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKT---------------DLGQKIRRAFISPPTK 743
            +H  +    T TGRL+ +EPNLQN+P                  +     RR F++    
Sbjct: 958  LHPNFLQEGTDTGRLSCVEPNLQNLPRNGIAAAVAGNDAEEDGEEDLLGFRRCFVATGGC 1017

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             L+S DY QIELR+LAH+     L      S DIHR +A  +F      VS + R  AK 
Sbjct: 1018 VLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP--VSTEERSLAKR 1075

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            + F ++YG  P  LAT + +    A        + FPGI  Y  +     R NG+V T+ 
Sbjct: 1076 VVFGVLYGAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEARANGFVRTLS 1135

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL--EDHKLATKML 921
            GR  +  +I S   S R+  ER A N+ +QGSAAD+ + AM++V K +     +    +L
Sbjct: 1136 GRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLL 1195

Query: 922  LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
             QIHDE+VF V +E +     ++  +M  A      L VPL V  K  ++
Sbjct: 1196 SQIHDEMVFMVRKELLPMVVPLVSSAMSHAM----QLLVPLSVTAKFGDS 1241



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 75/213 (35%), Gaps = 18/213 (8%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            Q         +  ++  L   L  + LL  + R +K +  +++ ++  G+++D   + +
Sbjct: 677 AQCQLAHQVYYLATVYRSLYGLLGSKGLLQAFLRQEKRIALLLALLKYNGMRVDLHEVHR 736

Query: 598 VSAEISKNLLSLEENIYDLS---GEKFNLSSPKQLGDILFTKLKF--------------P 640
                   +    +    L    GE FN+ S  Q    L+  L+                
Sbjct: 737 YQKSCEAEMARQRQLASKLVPELGEDFNIQSHDQCRRALYEVLQLGKYLLKSGNGEAVGA 796

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRV 699
           +G     G   +TA+D  +     +     +L +R++SK+  TY + +  + +   + + 
Sbjct: 797 TGLTITKGGRLSTAEDTLRALARHHEFPACLLRYRKVSKLMQTYIEGMMGYAVVHSSAQA 856

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
                L S      AS     Q      D G K
Sbjct: 857 SPAPCLDSVNAETGASESTKGQQQAHGNDEGAK 889


>gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum]
 gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            infantum JPCM5]
          Length = 1257

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/290 (33%), Positives = 140/290 (48%), Gaps = 23/290 (7%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKT---------------DLGQKIRRAFISPPTK 743
            +H  +    T TGRL+ +EPNLQN+P                  +     RR F++    
Sbjct: 958  LHPNFLQEGTDTGRLSCVEPNLQNLPRNGIAAAVAGNDAEEDGEEDLLGFRRCFVATGGC 1017

Query: 744  KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
             L+S DY QIELR+LAH+     L      S DIHR +A  +F      VS + R  AK 
Sbjct: 1018 VLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP--VSTEERSLAKR 1075

Query: 804  INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            + F ++YG  P  LAT + +    A        + FPGI  Y  +     R NG+V T+ 
Sbjct: 1076 VVFGVLYGAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEARANGFVRTLS 1135

Query: 864  GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL--EDHKLATKML 921
            GR  +  +I S   S R+  ER A N+ +QGSAAD+ + AM++V K +     +    +L
Sbjct: 1136 GRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLL 1195

Query: 922  LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
             QIHDE+VF V +E +     ++  +M  A      L VPL V  K  ++
Sbjct: 1196 SQIHDEMVFMVRKELLPMVVPLVSSAMSHAM----QLLVPLSVTAKFGDS 1241



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 75/213 (35%), Gaps = 18/213 (8%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            Q         +  ++  L   L  + LL  + R +K +  +++ ++  G+++D   + +
Sbjct: 677 AQCQLAHQVYYLATVYRSLYGLLGSKGLLQAFLRQEKRIALLLALLKYNGMRVDLHEVHR 736

Query: 598 VSAEISKNLLSLEENIYDLS---GEKFNLSSPKQLGDILFTKLKF--------------P 640
                   +    +    L    GE FN+ S  Q    L+  L+                
Sbjct: 737 YQKSCEAEMARQRQLASKLVPELGEDFNIQSHDQCRRALYEVLQLGKYLLKSGNGEAVGA 796

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRV 699
           +G     G   +TA+D  +     +     +L +R++SK+  TY + +  + +   + + 
Sbjct: 797 TGLTITKGGRLSTAEDTLRALARHHEFPACLLRYRKVSKLMQTYIEGMMGYAVVHSSAQA 856

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
                L S      AS     Q      D G K
Sbjct: 857 SPAPCLDSVNAETGASESTKGQQQAHGNDEGAK 889


>gi|269849483|sp|B7NVU6|XNI_ECO7I RecName: Full=Protein Xni
          Length = 251

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    +  +R++  PDYKA RP + E L  ++P +R A +  G+P     G EADD+ 
Sbjct: 48  VFDDENRSSGWRHQRLPDYKAGRPPMQEELHNEMPALRAAFEQRGVPCWSASGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++  
Sbjct: 108 ATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A 
Sbjct: 168 YWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 227 LCRDIARLQTDLHIDGNLQQLRL 249


>gi|48696692|ref|YP_024986.1| DNA polymerase I [Vibrio phage VP5]
 gi|40806155|gb|AAR92073.1| DNA polymerase I [Vibrio phage VP5]
          Length = 633

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 120/657 (18%), Positives = 249/657 (37%), Gaps = 112/657 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L    + ++      +     K    +++T D +          + D+            
Sbjct: 17  LTKYEAWAYDTECTGLKYKVDKVFGFSVATPDGQSG--------YFDIREQ--------- 59

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRS 501
               + + +L +  ++     + HN  +D  +    GI +     +D  + +  ++   S
Sbjct: 60  ---PDAVQWLVEQADSYKGTIVCHNASFDYRMSLHSGIKLPLSQIDDTGIRACCINEHES 116

Query: 502 -----------SHDIASIAQKWLS-----YTRKEILK------SRKSSIP-IDKISDSQV 538
                       + +  +A+K++          E+        +RK+ +P + +     V
Sbjct: 117 TIFPWTRGKAGDYSLDYLAKKYVGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGLV 176

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           +++A  ++ + L+LWL  +  +    L  +    ++ ++  + + E  G+++D +  +Q 
Sbjct: 177 RKYACPDAELTLELWLEQQELIAKRGLEKIVA-FERKVMPTLIRAEARGVRVDLNYAEQA 235

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--------PSGAKTKTGQW 650
             ++   +   +  ++ L+G +FN +SPKQ+ ++   K +             +T TG  
Sbjct: 236 ILKMDGVVRENQAKMFQLAGREFNPNSPKQVREVFGAKEERGVWTSRDGTVLERTATGNP 295

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR--TQRVHTFYSLA-- 706
              A     +    +P+   +LE R   K K T+   L  H+ +     RV+   +    
Sbjct: 296 CLDADA---LRAMKDPLAAAVLELRSNIKTKDTF---LAKHVVEHSVGGRVYPNINQMKG 349

Query: 707 ---STMTGRLASLEPNLQNIPIKTD-LGQKIRRAFISPPTKKLISADYSQIELRILAHI- 761
               T TGRL+   P LQ IP +   +   I+ AF+    +  + +D +  E+RI AH+ 
Sbjct: 350 EDGGTGTGRLSYTGPALQQIPSRNKRIAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLV 409

Query: 762 -AKITPLYQVFENS--LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
            A    + + +  +  LD+H+ V  ++ G+     S   + +AK +N  +I+      +A
Sbjct: 410 AAYNPAIARAYAENPELDLHQWV-GDLMGIPRNA-SYSGQANAKQMNLGMIFNRGDGAVA 467

Query: 819 TQLRIPRS-------------------EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
             L +P                     EA   I  Y  +  G+     + +    + G++
Sbjct: 468 DSLGMPWEWCEFTDKKGDLIRYKKAGPEAKAVIAAYHTQIQGVKTLATRAQKIAEERGWI 527

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           +T  GRR+ +                 A    IQ +AAD  +   + +  +L        
Sbjct: 528 QTAHGRRLRFPN---------GYKSYKASGILIQATAADENKENWLRIEDALGSDG---S 575

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI-KVSNNWQEE 975
           M+L  HD     V E       ++      K  + +  LRVPL +    V  NW E 
Sbjct: 576 MILNTHDSYSMSVDENWKPIWERV------KKAVERQTLRVPLLLEFDGVGKNWAEA 626


>gi|262202398|ref|YP_003273606.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Gordonia bronchialis DSM 43247]
 gi|262085745|gb|ACY21713.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Gordonia bronchialis DSM 43247]
          Length = 347

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/330 (26%), Positives = 150/330 (45%), Gaps = 44/330 (13%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+DG+S  +R+FYA P      DG PVNA+ GF + +  L+   R   +     + 
Sbjct: 19  DSLMLLDGASLWFRSFYALPEKMTAPDGRPVNAVRGFLDTIANLVTRERPTRLVVCLDLD 78

Query: 65  FDYPAVTFRNEIYPDYKANR----------------PKIPEMLLPQLPLVRLATQAFGIP 108
           +     +FR ++ P YKA+R                 ++P+ L PQ+ ++    +  GI 
Sbjct: 79  W---RPSFRTDLIPSYKAHRVATPAASGTGDSEIDVEEVPDTLTPQVDMIMRVLECAGIA 135

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEE 161
                G EADD+I T  Y  E+    V ++S D+DL+Q+V+                K E
Sbjct: 136 RSGAVGCEADDVIGTLAY--EEAQDPVVVVSGDRDLLQVVADDPVPVRVLYVGRGLAKAE 193

Query: 162 KIDIEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
            +  + V  ++G+P ++       +  L GD  D +PG+PG+G KTAA L+ E+G+L+N+
Sbjct: 194 MMGPDEVAARYGVPADRAGMAYAEMSMLRGDPSDGLPGVPGVGEKTAATLISEFGSLDNL 253

Query: 218 LINASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITIPL---------EHLILE 265
              A+        + R+ IL  A+    +R +V++RTD                + L  +
Sbjct: 254 EAAAADPSSSVPTRARKAILASADYLDAARTVVLVRTDADTIDSWTADEDAAGTDRLPAQ 313

Query: 266 DCNGPRLISFLKALEFTKLINRVATTYDCD 295
             +   L   ++ L     + R+A     +
Sbjct: 314 PADPDGLARLIEELGIGTSVARLAKALGWE 343


>gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 940

 Score =  226 bits (576), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 98/377 (25%), Positives = 157/377 (41%), Gaps = 27/377 (7%)

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PK    IL      P          +       +       ++ ++    ++S   ++  
Sbjct: 562 PKVESAILRAFAGEPHEGNYGVAYQQLEPVRGHEHAASVCRLLWHLQRSIRISAAITSVL 621

Query: 686 DSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
             L   I  ++             T TGRL   +PNLQN P   +    IR+AF + P  
Sbjct: 622 SPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQNPPSAHNDLYSIRKAFSARPGN 681

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--------- 794
            LI  DYSQ+ELRILAH+++   + +      DIH   A ++F    E V+         
Sbjct: 682 TLIVGDYSQLELRILAHMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAVANGSVVIDDA 741

Query: 795 -------------PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
                           R+ AK +NFSI YG +   LA ++ +P ++  D   R+ +   G
Sbjct: 742 EAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDMFTRWNNSKKG 801

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           +  +  +     R   +  ++ GR   +  I          +ERAA+N  IQGSAADI  
Sbjct: 802 VERWKAEIIQQARDTQHATSVLGRHRRFPHIKHRLRKYSGRSERAAVNFVIQGSAADIAM 861

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL---PKINL 958
            AM+ V +     ++  K+++Q+HDE++ E P E  T A  I+   ME       P   +
Sbjct: 862 MAMLRVDRDERLRRMGFKIVMQVHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRM 921

Query: 959 RVPLKVNIKVSNNWQEE 975
            + L V+I    NW + 
Sbjct: 922 LINLDVDIATGTNWSDA 938



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 84/223 (37%), Gaps = 11/223 (4%)

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIET--EIDRDTTIKTSQFSSLSDQTSKIN 342
           + R        A    P + D     ++ ++I T  ++  +   +T       ++ +++ 
Sbjct: 38  VQREDVLKYLPALMPRPALTDREILHHQPVSILTGGDVHSEKADETPLLPEKEEKATRVR 97

Query: 343 SEQTPQKLF-LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI-GSASFKIITDTMD 400
           ++   ++L  +++              T + N +   + ++ LE   G  ++      ++
Sbjct: 98  ADAFAKRLAKIDQETDFRMSYSPPRGITLVCNEEQAMRAIRALEAHRGPVAWDTEFWNVE 157

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
              + P   +   L        K++     L              ++ +L   + +FEN 
Sbjct: 158 LTRNTPAHSSGELLCLTAFGGGKLDFGSGPL------LFVDCKGPSRHVLDLFRSYFENP 211

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502
              KI HN   D  VL+ +GI++RG   D   ++ + DS  SS
Sbjct: 212 AKRKIFHNFAADAHVLYGHGITVRGLEADTRYLARLFDSSLSS 254


>gi|162135103|ref|YP_001595844.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513950|emb|CAO77776.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 664

 Score =  226 bits (576), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 126/675 (18%), Positives = 250/675 (37%), Gaps = 135/675 (20%)

Query: 385 ETIGSASFKIITDTMDAFHSKP----------IAIAISTLDQKDDTSFKVETIFIDLSVH 434
           E     +    T   D     P            I+ +  D            ++ +   
Sbjct: 28  EGAKRVAIDCETRDPDLRKLGPGAGRRPNSYITGISFAIEDGPGG--------YLPIRHE 79

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS---MRGFEDIML 491
                 G N   + +L+YL+   +      +G N+ YD   L   GI    +R F DI +
Sbjct: 80  G-----GGNLPLEGVLAYLRAQAKVFTGDLVGANLPYDLDFLAGDGIEFERVRYFRDIQI 134

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKE-------ILKSRKSSIPIDKISDSQVQEHAIE 544
              ++     S+ + +IA++W  Y + E       +         +  +    V ++A E
Sbjct: 135 ADPLICELHDSYSMQAIAERWGFYGKDEALLRAAAVDYGIDPKKDMWMLPAKFVGKYAEE 194

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           ++ + L +      ++  + L  VY  L+  ++ +++++   G++ID D L  +     +
Sbjct: 195 DTRLPLNILRRQEREIDEQDLWGVY-NLESKLLPILTRLRRRGVRIDCDRLDMIERWALE 253

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP----SGAKTKTGQWKTTAQDLEQI 660
                   +  ++G +        +GD+   ++  P     G K         + D E +
Sbjct: 254 KETEALAQVRSITGHRI------AVGDVWKPEVIAPALEHIGIKLNKTSQGKPSIDKELL 307

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL------------AST 708
              D+P+   +   R+++K+++T+A S+ +H+     R+H  ++             A  
Sbjct: 308 GSIDHPVAGLLERARKVNKLRTTFASSVRDHMV--NGRLHGTFNQLRRQKDDESDGTAGA 365

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA------ 762
             GRL+S  PNLQ  P + +     R  ++    +   S DYSQ E R+  H A      
Sbjct: 366 AYGRLSSEHPNLQQQPARDEFAMMWRSIYLPEEGQHWASNDYSQQEPRMAVHYACLAKDL 425

Query: 763 -KITPLYQV------FENS--LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
                          + N    D H+M+A          ++   R+ AK I   + YG+ 
Sbjct: 426 IGHKAWLSAIEARDKYRNDPNTDNHQMMA---------DMAGIKRKDAKEIYLGLSYGMG 476

Query: 814 PFRLATQLRIPRSEA----------------------------------ADYIKRYFHRF 839
             ++  +L +P   A                                     +  +  + 
Sbjct: 477 GAKMCRKLGLPTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEAAGPEGQALLDTFDQKV 536

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P I +  +  +   +  GY+ T+ GRR  + +                +N  IQGS+AD 
Sbjct: 537 PFIKKLAKACEARAKAVGYITTLSGRRCRFPKDKDGNYD----WTHKGLNRLIQGSSADQ 592

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-EEITTASQIIVHSMEKACLPKINL 958
           T+ AM++      +  L   +++Q+HDE+ F V + +E   A+ I+             L
Sbjct: 593 TKMAMVAC----AEAGLD--IIIQVHDEIAFSVHDMKEAAEAAHIMRTC--------TPL 638

Query: 959 RVPLKVNIKVSNNWQ 973
            +P KV++++  +W 
Sbjct: 639 ELPSKVDVEIGQSWG 653


>gi|108799445|ref|YP_639642.1| 5'-3' exonuclease [Mycobacterium sp. MCS]
 gi|119868558|ref|YP_938510.1| 5'-3' exonuclease [Mycobacterium sp. KMS]
 gi|108769864|gb|ABG08586.1| 5'-3' exonuclease [Mycobacterium sp. MCS]
 gi|119694647|gb|ABL91720.1| 5'-3' exonuclease [Mycobacterium sp. KMS]
          Length = 316

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 144/316 (45%), Gaps = 32/316 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+DG+S  +R+++A P      DG PVNA+ GF + +  L+   R   +        
Sbjct: 4   PLLLLDGASMWFRSYFALPSSITAPDGRPVNAVRGFLDTVAMLIGRERPSRLVVCRD--- 60

Query: 66  DYPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           D     +R ++ P YKA+R             +P+ L PQ+ ++     AFGIP     G
Sbjct: 61  DDWRPQWRVDLVPSYKAHRVAEPQAAGTDVEVVPDELTPQVDMIMEMLDAFGIPHAGAPG 120

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC-------LYDTVKEEKIDIEH 167
           +EADD++ T      +E   V ++S D+D++Q+V                 K        
Sbjct: 121 YEADDVLGTLA--VAEERDRVIVVSGDRDMLQVVRDDPVEVRVLYLGRGMSKATLFGPAE 178

Query: 168 VIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           V  ++ +P E+       L  + GD  D +PG+PG+G KTAA LL ++G+LE I+  A+ 
Sbjct: 179 VADQYAVPKERAGAAYAELALMRGDPSDGLPGVPGVGEKTAATLLAQFGSLEAIVAAAND 238

Query: 224 IK---QKKRRENILEYAETARLSRKLVMLRTDVPITIP--LEHLILEDCNGPRLISFLKA 278
            K    K  R+ +L  A+    +  +V + TD P+T+    + L L   +  ++      
Sbjct: 239 PKSKMSKAYRKKMLAAADYIEAAEPVVRVATDAPVTMSTKTDELPLAAAHPRKVAQLAGD 298

Query: 279 LEFTKLINRVATTYDC 294
           L  T  + R+    D 
Sbjct: 299 LGVTSSVGRLQKALDA 314


>gi|48696650|ref|YP_024429.1| DNA polymerase I [Vibrio phage VP2]
 gi|40950048|gb|AAR97639.1| DNA polymerase I [Vibrio phage VP2]
          Length = 633

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 119/654 (18%), Positives = 249/654 (38%), Gaps = 106/654 (16%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L    + ++      +     K    +++T D +          + D+            
Sbjct: 17  LTKYEAWAYDTECTGLKYKVDKVFGFSVATPDGQSG--------YFDIREQ--------- 59

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRS 501
               + + +L +  ++     + HN  +D  +    GI +     +D  + +  ++   S
Sbjct: 60  ---PDAVQWLVEQADSYKGTIVCHNASFDYRMSLHSGIKLPLSQIDDTGIRACCINEHES 116

Query: 502 -----------SHDIASIAQKWLS-----YTRKEILK------SRKSSIP-IDKISDSQV 538
                       + +  +A+K++          E+        +RK+ +P + +     V
Sbjct: 117 TIFPWTRGKAGDYSLDYLAKKYVGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGLV 176

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           +++A  ++ + L+LWL  +  +    L  +    ++ ++  + + E  G+++D +  +Q 
Sbjct: 177 RKYACPDAELTLELWLEQQELIAKRGLEKIVA-FERKVMPTLIRAEARGVRVDLNYAEQA 235

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ--- 655
             ++   +   +  ++ L+G +FN +SPKQ+ ++   K +            + TA    
Sbjct: 236 ILKMDGVVRENQAKMFQLAGREFNPNSPKQVREVFGAKEERGVWTSRDGTILERTATGNP 295

Query: 656 --DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR--TQRVHTFYSLA----- 706
             D + +    +P+   +LE R   K K T+   L  H+ +     RV+   +       
Sbjct: 296 CLDADALRAMKDPLAAAVLELRSNIKTKDTF---LAKHVVEHSVGGRVYPNINQMKGEDG 352

Query: 707 STMTGRLASLEPNLQNIPIKTD-LGQKIRRAFISPPTKKLISADYSQIELRILAHI--AK 763
            T TGRL+   P LQ IP +   +   I+ AF+    +  + +D +  E+RI AH+  A 
Sbjct: 353 GTGTGRLSYTGPALQQIPSRNKRIAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLVAAY 412

Query: 764 ITPLYQVFENS--LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
              + + +  +  LD+H+ V  ++ G+     S   + +AK +N  +I+      +A  L
Sbjct: 413 NPAIARAYAENPELDLHQWV-GDLMGIPRNA-SYSGQANAKQMNLGMIFNRGDGAVADSL 470

Query: 822 RIPRS-------------------EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +P                     EA   I  Y  +  G+     + +    + G+++T 
Sbjct: 471 GMPWEWCEFTDKKGDLIRYKKAGPEAKAVIAAYHTQIQGVKTLATRAQKIAEERGWIQTA 530

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GRR+ +                 A    IQ +AAD  +   + +  +L        M+L
Sbjct: 531 HGRRLRFPN---------GYKSYKASGILIQATAADENKENWLRIEDALGSDG---SMIL 578

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI-KVSNNWQEE 975
             HD     V E       ++      K  + +  LRVPL +    V  NW E 
Sbjct: 579 NTHDSYSMSVDENWKPIWERV------KKAVERQTLRVPLLLEFDGVGKNWAEA 626


>gi|126173609|ref|YP_001049758.1| exonuclease IX [Shewanella baltica OS155]
 gi|166918967|sp|A3D2C6|XNI_SHEB5 RecName: Full=Protein Xni
 gi|125996814|gb|ABN60889.1| 5'-3' exonuclease [Shewanella baltica OS155]
          Length = 262

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +               +   KLL+  R     +H A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDETDMQSLTER-----VISACTKLLRVHR----PTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++    A  I +I     EADD+IAT 
Sbjct: 53  WDGHEISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL       +D   ++ +DI  + +K G+   + + L A
Sbjct: 112 AIKTAKAQGEAIIVSTDKGFSQLNHRHISQWDHFNQQYLDIAALEQKLGVERSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ + +L  +  + S +   K+ + + E  E ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNL-GAKQAKKLAEGKEMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPR 271
           KL  L+TD+P+ I L+   + D    +
Sbjct: 231 KLAQLQTDLPLNINLKDFRVIDSPPEK 257


>gi|20095249|gb|AAL85287.2|AF465603_1 polymerase [Vibrio phage 1]
          Length = 786

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/697 (18%), Positives = 262/697 (37%), Gaps = 78/697 (11%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQ----WVQKLETI------- 387
           + I      ++ FL+     +    N  +   I+     ++     + +++         
Sbjct: 92  AAIGRTDPQKEAFLQIDIMQACRMHNTGTIKPILGEYHWRKDFSIIIDEIKAQYAETGKP 151

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDL-SVHTSQDSTGKNTLT 446
              +  + T   D        ++           F     + DL   ++++D   +  L 
Sbjct: 152 VRVAGDLETVGFDYVSKDRFIVS---------AQFSHREGYSDLVRFYSTEDQPKEGDLL 202

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKL-VLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504
            + + +L     +E  +  G N KYD   + +++ I    F+ D  L+  +L+  RS + 
Sbjct: 203 HDQIKWL---LNSEMVIMCGANFKYDLNWIKYKWNIECTNFKLDTTLVGSLLNENRS-NS 258

Query: 505 IASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           + + A+ +       + L +      +D I D  +  +A  +++  L++      +L  +
Sbjct: 259 LNTHAKLFTDLGGYDDDLNNIYDKGRMDLIPDENLLPYAGGDTDATLRVRNHFARELQQD 318

Query: 564 K-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
             L + Y  L  P      +ME  G++++ + LK +  E+ +        + D+      
Sbjct: 319 PWLTNFYVNLLHPASRAFEKMEQNGVKVNGEKLKTLGEELEQEKNQYLREMVDMMPATAC 378

Query: 623 LSSPKQL--------GDILFTKLKF--------PSGAKTKTGQWKTTAQDLEQINCGDNP 666
              P+           D LF                 +  T +      D  +     + 
Sbjct: 379 PEVPEAKPVIKAAIGKDYLFGARGLGLKPIMVNEKNKEPLTNKSHLNNFDDPKKYPEAHK 438

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS------------TMTGRLA 714
            I+   +W Q  K + TY      H  +      ++                 T+TGRLA
Sbjct: 439 FIQLGNKWNQADKAQGTYCTGFLRHQREDGYFHPSYMLFKGAFDNDKGTDDSGTVTGRLA 498

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
           + +P +Q +P KT L +++R  +  P    ++  D+SQ ELR L  +A    + + +   
Sbjct: 499 AKDPAIQTLPKKTSLAKRLRACYEPPEGYSIVEIDFSQGELRRLCGMANEPAMKKAYREG 558

Query: 775 LDIHRMVAAEIFGVNIEKVSPQM----------RRHAKTINFSIIYGISPFRLATQLR-- 822
           LD+H +      G++ E++              R + K  NF ++YG+S        +  
Sbjct: 559 LDLHVISGGATAGLSYEQMQELEKTDAALYKKYRNYGKPQNFGLLYGMSWGGFQQYAKDQ 618

Query: 823 ----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
               +   EA +    +F  +  + ++ E+TK F R NGY+ +  GR  H   INS  + 
Sbjct: 619 YGVLLSDKEAQNMRFNFFDTYARLPDWHEETKEFARVNGYIRSPLGRVRHLPLINSFDNF 678

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938
            ++  ER A+N+ +Q + +D+    M        D     K +  IHD LV  +  ++++
Sbjct: 679 YKSQAERQAVNSGVQSTLSDLLIYGMARFRAQYGDPD-EVKFMAMIHDALVSYIKTDQLS 737

Query: 939 TASQIIVHSMEKAC----LPKINLRVPLKVNIKVSNN 971
               I+   M+       +    + +P   + + S  
Sbjct: 738 YWIPILQAIMQDTQILYDVFGWEVDIPFIADAEHSET 774


>gi|152999889|ref|YP_001365570.1| exonuclease IX [Shewanella baltica OS185]
 gi|166918968|sp|A6WL18|XNI_SHEB8 RecName: Full=Protein Xni
 gi|151364507|gb|ABS07507.1| 5'-3' exonuclease [Shewanella baltica OS185]
          Length = 262

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +          ++  C  L ++          SH A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDETDMQS--LTERVSSACTKLLRV-------HRPSHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++    A  I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL       +D   ++ +DI  + +K G+   + + L A
Sbjct: 112 AIKTAKAQGEAIIVSTDKGFSQLNHRHISQWDHFNQQYLDIAALEQKLGVERSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ + +L  +  + S +   K+ + + E  E ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNL-GAKQAKKLAEGKEMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPR 271
           KL  L+TD+P+ I L+   + D    +
Sbjct: 231 KLAQLQTDLPLNINLKDFRVIDSQPEK 257


>gi|330468020|ref|YP_004405763.1| 5'-3' exonuclease [Verrucosispora maris AB-18-032]
 gi|328810991|gb|AEB45163.1| 5'-3' exonuclease [Verrucosispora maris AB-18-032]
          Length = 308

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 138/313 (44%), Gaps = 24/313 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M ++  + LVD  S  +RA++  P  + +  DG PVNA+ GF +ML +L++  R      
Sbjct: 1   MAQQTPIMLVDAPSLYFRAYFGIPESAAKTADGQPVNAVRGFLDMLAQLVRTRRPGR--- 57

Query: 60  HFAVIFDYP-AVTFRNEIYPDYKANRPKI------PEMLLPQLPLVRLATQAFGIPAIEI 112
                 D+     +R  + P YKA+R         P+ L PQ+P++    +A GI  +  
Sbjct: 58  -MVCAMDHDWRPDWRVALLPSYKAHRVAPEGGEIVPDTLSPQVPMLLDVLEALGITVVGA 116

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIE 166
            G+EADD++ T +    + G  V ++S D+DL QL+                K +  D  
Sbjct: 117 AGYEADDVLGTLS--VTQPG-PVEVVSGDRDLFQLIDDARAVRLLYIGRGVAKLDDCDDA 173

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK- 225
            V  ++G+P ++     AL GD  D +PG+ G+G KTAA L+  YG++  IL        
Sbjct: 174 AVRARYGVPADRYAEFAALRGDPSDGLPGVAGVGEKTAARLIDRYGDIAGILAALDDPAS 233

Query: 226 --QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
                 R  +    +   ++ K+V +  DVP+      L     +  RL+   +      
Sbjct: 234 GFAPGLRAKLAAARDYLAVAPKVVRVALDVPLPPLPTELPTAPADPDRLLDLAQRWNLAG 293

Query: 284 LINRVATTYDCDA 296
              R+       A
Sbjct: 294 STRRLVDALATGA 306


>gi|183600877|ref|ZP_02962370.1| hypothetical protein PROSTU_04477 [Providencia stuartii ATCC 25827]
 gi|188019660|gb|EDU57700.1| hypothetical protein PROSTU_04477 [Providencia stuartii ATCC 25827]
          Length = 252

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 17/263 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R  +A         G P        +     L      +  +H   +F
Sbjct: 3   HLLIIDALNLIRRI-HAV-------QGSPCG------DACLSALAQLISHTSPTHIVAVF 48

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+E  PDYKA R  +PE L  +LP +    +A G+   +  G EADD+ AT
Sbjct: 49  DEEGRHNSWRHEKLPDYKAGRQPMPENLYAELPSLVKQFEAKGVHCWQSSGDEADDLAAT 108

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SP+  + D  ++  +D+  + K++G+ P ++    
Sbjct: 109 LAKKIADAGQTVTIVSTDKGYCQLLSPSIRIRDYFQKRWLDVPFIEKEFGVKPCQLPDYW 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PG+ GIG K+A  LLQ+Y ++EN+  +   + +K  R+ ++   + A++ 
Sbjct: 169 GLAGISSSKVPGVAGIGAKSATQLLQQYHSIENLFAHLDSVDEKW-RKKLIGQFDIAKVC 227

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           R +  LRTD+ +   L  L    
Sbjct: 228 RDIATLRTDIQLQGNLNQLRYHP 250


>gi|331006918|ref|ZP_08330163.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419238|gb|EGG93659.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 316

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 152/297 (51%), Gaps = 16/297 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            + L+D S +I++ +++ P     + +  P  A+ G+   L +LL+  +     +  A  
Sbjct: 17  PVLLIDASIYIFQYYFSLPDNWFSEKECCPTAAVYGYTAWLVRLLKAEQ----PARVAAC 72

Query: 65  FDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD      FRN+IY DYK++R    E L  QL   +  T   GI       +EADD++ +
Sbjct: 73  FDESLDQCFRNDIYSDYKSSRALPDEALAFQLNACQKITHLLGINTYASHRYEADDLLGS 132

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              I  +    + I++ DKDL QL+  P   L+D  K+++ D + + +K+ + P+++V  
Sbjct: 133 LYRICCRSTVPIAILTRDKDLGQLLQRPQDYLWDYAKKQQYDEQGIAEKFLVRPDQLVDY 192

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI---------KQKKRRENI 233
            AL GD+ID+IPG+PGIG KTA+ LL+ YG++E +L     +            +   N+
Sbjct: 193 LALVGDAIDDIPGVPGIGAKTASALLKHYGSIEIMLSQLDELLLSPPVGVRGAPRIVANL 252

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
             Y E   ++++L  + TD+P+   ++ L  +  +  ++  F + + F  L   +A 
Sbjct: 253 QGYREQIAIAQQLATIVTDLPLIGSVKELDRQKVDLSKVNRFCQEMGFPALSKTIAA 309


>gi|256376383|ref|YP_003100043.1| 5'-3' exonuclease [Actinosynnema mirum DSM 43827]
 gi|255920686|gb|ACU36197.1| 5'-3' exonuclease [Actinosynnema mirum DSM 43827]
          Length = 349

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 139/315 (44%), Gaps = 28/315 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +S  +R+FYA P      DG PVNA+ GF + + K++ +     + +     +
Sbjct: 38  PLVLMDAASLYFRSFYALPESMTAPDGTPVNAVRGFVDTIAKIVNDRNASRLVACLDADW 97

Query: 66  DYPAVTFRNEIYPDYKANR-------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
                 FR    P YKA+R        ++P+ L PQ+P++     A GI   E  G+EAD
Sbjct: 98  ---RPEFRVAALPSYKAHRVAESGDAEEVPDTLTPQVPIILDVLDAVGIATAEAPGYEAD 154

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHVIKK 171
           D+I T    A +    V +++ D+DL Q+V  T              K E +    +  K
Sbjct: 155 DVIGTLA--ARETTNPVEVVTGDRDLFQVVRTTPTPAGVLYLGRGWAKAELVGPAELAAK 212

Query: 172 WGIPPE----KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA----SR 223
           + +P E        +  L GD  D +PG+ GIG KTAA L+ E+G+LE +L        R
Sbjct: 213 YALPEEDAGRAYAGMAVLRGDPSDGLPGVAGIGEKTAAKLITEFGSLEALLAAVHDGRDR 272

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFT 282
               K R  ++   +   ++  +V +  D P+T   +  L     +  RL    K     
Sbjct: 273 KLTTKARNALIAAEDYLAVAPTVVNVALDAPVTQDRDDTLPTTPADPARLTELTKRWGLG 332

Query: 283 KLINRVATTYDCDAA 297
             I R+ T  +  A 
Sbjct: 333 SSIPRLVTALERRAE 347


>gi|294139913|ref|YP_003555891.1| exodeoxyribonuclease IX [Shewanella violacea DSS12]
 gi|293326382|dbj|BAJ01113.1| exodeoxyribonuclease IX [Shewanella violacea DSS12]
          Length = 252

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 11/262 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R   A P  +   +GL  N +A  CN L K           +H A++
Sbjct: 2   NTFLIIDGLNLVRRIHAAQPNENDT-NGLD-NRVASACNKLLKY-------HQPTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R +++ DYK  R  +PE L   LP ++L      + +++    EADD+IAT 
Sbjct: 53  WDGKEISWRKQLFEDYKKGRKPMPEALSEYLPGLKLHLAKIHVNSLDA-ASEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                  G    I+STDK   QL  P    +D   +  + +E   +K G+   + +   A
Sbjct: 112 ASKLATSGGEAIIVSTDKGFTQLNHPKIKRWDHFNKAYLTVEEREQKLGVQHSQFIDYLA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPG+PGIG K+A  LL+ + +L NI  +   +   K+ + + E  + ARLS 
Sbjct: 172 LAGDSGNKIPGVPGIGPKSAVELLKIFRSLANIYSSIDEV-GAKQAKKLEEGKQMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILED 266
           KLV L+ D+P+   L    L  
Sbjct: 231 KLVQLQLDMPLKANLSQFRLPQ 252


>gi|294660324|ref|NP_853015.2| 5'-3' exonuclease [Mycoplasma gallisepticum str. R(low)]
 gi|284811981|gb|AAP56583.2| 5'-3' exonuclease [Mycoplasma gallisepticum str. R(low)]
 gi|284930493|gb|ADC30432.1| 5'-3' exonuclease [Mycoplasma gallisepticum str. R(high)]
          Length = 288

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 150/292 (51%), Gaps = 13/292 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLL---SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M+      ++DG+S ++RAFYAT  +   + K    P N I     M+ K+L + + +  
Sbjct: 1   MKSTKKALIIDGNSLVFRAFYATLSMYEYAIKKGIRPSNGIKTSLKMINKILNSDQYD-- 58

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +  V FD    T R +IY  YKA R K  E L+ QL  ++      G+  +   G EA
Sbjct: 59  --YALVAFDSKEKTDRAKIYEGYKATRKKPVEGLIEQLVALQDGFSYLGLNVLSSPGIEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173
           DD+I +++ +A K+     I ++D+D+ QLV+    +Y  VK      ++   +  + + 
Sbjct: 117 DDLIGSFSALANKDQITCHIYTSDQDIFQLVNQYNVVYQFVKGVSVFNQVHERNFQEHFH 176

Query: 174 -IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            + PE ++  +AL GDS DNIPG+ GIG KTA  L+++Y N++NI  N  +IK    ++ 
Sbjct: 177 DLKPEDVIQYKALVGDSSDNIPGVKGIGEKTAVQLIKDYLNIDNIYANLDQIKPS-IKDK 235

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
           ++       LS++L  +RTD  +   + +  L+  +     +F +  + + L
Sbjct: 236 LVANKANCYLSKELATIRTDCLVDQYINNFKLKPLDQQNYFAFCEYYKISHL 287


>gi|50364870|ref|YP_053295.1| 5'-3' exonuclease [Mesoplasma florum L1]
 gi|50363426|gb|AAT75411.1| 5'-3' exonuclease [Mesoplasma florum L1]
          Length = 317

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 91/297 (30%), Positives = 149/297 (50%), Gaps = 14/297 (4%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           + ++  + ++DG   +++ +Y T     L+   +G+P+NAI  F   + +L++ +   S 
Sbjct: 4   LNEKRTILIIDGYHLLHKGYYGTLKRKKLATNREGVPINAIYTFVAKINQLVKKNNYYS- 62

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
                V  D     +R E+YP+YKA R + PE L+PQ  ++R    A  IP  E+  +EA
Sbjct: 63  ---IIVTLDMDEGCWRRELYPEYKAKRKETPEDLVPQKQIIREFLTAANIPWYEMPRYEA 119

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWG 173
           DDII T   IA K  + V I+S DKD+ QLV   T +     ++     ID E V++K+G
Sbjct: 120 DDIIGTINRIALKLDYDVHILSNDKDIFQLVGERTTVITNSSKDDEHILIDHEKVVEKFG 179

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
             P ++  ++AL GD  DNI G+  + Y  A  LL +YGN++NI  +   I  K   + +
Sbjct: 180 CHPSQVADIKALMGDPSDNIKGVRYLHYAQAIDLLNKYGNIDNIFEHIDEI-NKNISKRL 238

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            E  E    ++K+  ++  +PI     +L     N   L  FLK  +    +  V  
Sbjct: 239 NESKELILTNKKITTIQDRLPIGR--VNLKPIRVNWYGLSKFLKKQKMWAYVADVEK 293


>gi|163749528|ref|ZP_02156776.1| exonuclease IX [Shewanella benthica KT99]
 gi|161330937|gb|EDQ01864.1| exonuclease IX [Shewanella benthica KT99]
          Length = 257

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 129/262 (49%), Gaps = 11/262 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R   A P      +GL  N +A  CN L K           SH A++
Sbjct: 2   NTFLIIDGLNLVRRIHAAQPN-DNDTNGLD-NRVASACNKLLKF-------HQPSHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   V++R  ++ DYK  R  +P+ L   LP ++L      + +++    EADD+IAT 
Sbjct: 53  WDGKEVSWRKHLFEDYKKGRKPMPKALSEYLPGLKLHLANIHVNSLDADS-EADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                  G    I+STDK   QL  P    +D   +  + I    ++ G+   + +   A
Sbjct: 112 ASKLAASGGEAIIVSTDKGFTQLNHPKIKRWDHFNKVYLTIAEREQQLGVQHSQFIDYLA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPG+PGIG K+A  LL+ + +L NI ++   +   K+ + + E  + ARLS 
Sbjct: 172 LAGDSGNKIPGVPGIGPKSAIELLKRFRSLANIYLSIDEV-GAKQAKKLEEGKQMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILED 266
           KLV LRTD+P+   L    L  
Sbjct: 231 KLVQLRTDMPLKANLNQFRLPQ 252


>gi|302550272|ref|ZP_07302614.1| 5'-3' exonuclease [Streptomyces viridochromogenes DSM 40736]
 gi|302467890|gb|EFL30983.1| 5'-3' exonuclease [Streptomyces viridochromogenes DSM 40736]
          Length = 301

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 141/307 (45%), Gaps = 26/307 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA++  P   +  DG PVNA+ G  + + +L+++ R + + +     +  
Sbjct: 1   MLLDTASLYFRAYFGVPESVKAPDGTPVNAVRGLLDFIDRLVKDHRPDHLVACMDADW-- 58

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
               +R E+ P YKA+R            ++P+ L PQ+P++     A GI  + +  +E
Sbjct: 59  -RPHWRVELIPSYKAHRVAEERAAGPDEEEVPDTLSPQVPVIEAVLDAVGIARVGVAEYE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIK 170
           ADD+I T+T  A+     V I++ D+DL QLV       +   +K     +  D   +  
Sbjct: 118 ADDVIGTFTAGAK---GPVDIVTGDRDLYQLVDDARGVRVLYPLKGVGTLQLTDEAVLRG 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--- 227
           K+G+       L  L GD  D +PG+PGIG KTAA LL E+G+L  I+      + K   
Sbjct: 175 KYGVDGSGYADLALLRGDPSDGLPGVPGIGEKTAAKLLAEFGDLAGIMAAVEDRRSKLTP 234

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            +R  + E      ++ K+V +  DVP+      L     +   L +          + R
Sbjct: 235 TQRRRLDEARPYLAVAPKVVRVADDVPLPDVRTALPRAPRDPAGLEALAARWGLGGSLER 294

Query: 288 VATTYDC 294
           +  T   
Sbjct: 295 LLVTLGS 301


>gi|75763377|ref|ZP_00743113.1| 5'-3' exonuclease [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74489139|gb|EAO52619.1| 5'-3' exonuclease [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 219

 Score =  225 bits (573), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             + LVDG + ++RAFYAT       ++ DG P N I G+   L    Q        +H 
Sbjct: 2   KKVLLVDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTATQAIE----PTHI 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
              +D  + TFR E + +YKANR   PE L+PQ  LV+  T    IP I ++G+EADD I
Sbjct: 58  VTCWDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177
            T       E   V I++ D DL+QLV     +    K     E    E ++++ G+ P 
Sbjct: 118 GTLAKQYCNE-AEVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPEKIMEEKGVEPW 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
           ++V  +A  GD+ DN PG+ GIG KTA  L +  G +  +L 
Sbjct: 177 QIVHAKAFMGDTSDNYPGVKGIGEKTAYKLSRAXGTVSAVLE 218


>gi|149907571|ref|ZP_01896318.1| exodeoxyribonuclease IX [Moritella sp. PE36]
 gi|149809241|gb|EDM69170.1| exodeoxyribonuclease IX [Moritella sp. PE36]
          Length = 259

 Score =  225 bits (573), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 138/263 (52%), Gaps = 6/263 (2%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +NHL ++D  + I R  +A   L++ +D  PV  I+     +   ++     +  +H   
Sbjct: 3   QNHLLIIDALNLIRRV-HAV-QLNQSND--PVAQISATRETIKHAVRKLLSITAPTHVVA 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD     +R++IYP+YKANR  +PE L   L L++       + ++  +  EADD+IAT
Sbjct: 59  VFDAEQTGWRHDIYPEYKANRKPMPESLQQALTLIQDDLWELNVDSLLTEQDEADDLIAT 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                  +   VTIISTDK   QL++P   + D   +  +D   +  K+G+ P ++V   
Sbjct: 119 LAIKMSAQQQQVTIISTDKGYCQLLTPYIQIRDYFNKRWLDQAFINDKFGVQPLQLVDYW 178

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL G S  ++ G+ GIG KTA  LL ++ NL+ I  +   +K  K RE +  + E A ++
Sbjct: 179 ALVGISGSHLAGVAGIGPKTATQLLTQHVNLDAIYAS-EELKP-KLREKLDTHKEMAYIT 236

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           ++L  L+ D+P+   L+ L  + 
Sbjct: 237 QQLAQLKIDIPLGFNLKDLRYQP 259


>gi|145223684|ref|YP_001134362.1| 5'-3' exonuclease [Mycobacterium gilvum PYR-GCK]
 gi|145216170|gb|ABP45574.1| 5'-3' exonuclease [Mycobacterium gilvum PYR-GCK]
          Length = 321

 Score =  224 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 142/318 (44%), Gaps = 33/318 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+++  P      DG PVNA+ GF + +  ++   R   +      
Sbjct: 7   NSPLVLLDGASMWFRSYFGVPSSITAPDGRPVNALRGFLDAVSTVIARERPHRLVVCRD- 65

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
             D     +R ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 66  --DDWRPQWRVDLIPSYKAHRVLEENPADGPDVEEVPDELTPQVDMIMEILDAFGIATAG 123

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
              +EADD++ T    A +E   V ++S D+DL+QLV                 K  K  
Sbjct: 124 AAHYEADDVLGTLA--AAEERDPVVVVSGDRDLLQLVRDEPVPVRVLYLGKGLAKAVKWG 181

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V   +G+P E+     V L  L GD  D +PG+PGIG KTAA LL ++ +LENI+  
Sbjct: 182 PAEVADTYGVPLERAGSAYVELALLRGDPSDGLPGVPGIGEKTAATLLAQHNSLENIVAA 241

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPIT--IPLEHLILEDCNGPRLISF 275
           A        K  R+ +L  ++    +  +V + TD  +      + L L   +  +++  
Sbjct: 242 AHDPASTLSKAHRKKLLAASDYIEKAEPVVRVATDAELDWSTDGDALPLSARDPRKVVEL 301

Query: 276 LKALEFTKLINRVATTYD 293
            +    +  I R+    D
Sbjct: 302 AERYGVSSSIGRLQAALD 319


>gi|332753515|gb|EGJ83895.1| exonuclease xni [Shigella flexneri 4343-70]
          Length = 247

 Score =  224 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 127/262 (48%), Gaps = 21/262 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAVI 64
           + +VD  + I R                  A+ G          L      S  +H   +
Sbjct: 1   MLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVAV 44

Query: 65  FDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           FD    +  +R++  PDYKA+RP +PE L  ++P +R A +  G+P     G EADD+ A
Sbjct: 45  FDDENRSSGWRHQRLPDYKADRPPMPEELHDEMPALRAAFEQRGVPCWSASGNEADDLAA 104

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++   
Sbjct: 105 TLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDY 164

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A L
Sbjct: 165 WGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAFL 223

Query: 243 SRKLVMLRTDVPITIPLEHLIL 264
            R +  L+TD+ I   L+ L L
Sbjct: 224 CRDIARLQTDLHIDGNLQQLRL 245


>gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG]
 gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG]
          Length = 608

 Score =  224 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 127/606 (20%), Positives = 243/606 (40%), Gaps = 77/606 (12%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
                 T  ++ +       A      +    ++       L V       G        
Sbjct: 38  LGLDTETTGLNIYQD-----AFGIRLIQFGNPWESWV----LPVERGGVFVGAAVTA--- 85

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR----GFEDIMLMSYVLDS-----G 499
           L  +++F        + HN  +D  V+ R  G+ M       ED  + S+++D      G
Sbjct: 86  LQKVQRF--------VIHNAAFDLQVIERMLGVPMEQMWPKVEDTKIYSHLVDPRAYKEG 137

Query: 500 RSSHDIASIAQKWLSYTRKEILKS------RKSSIPIDKI------SDSQVQEHAIENSN 547
            + H +  + + ++     E +K+      +K     DKI       D   + +A  +  
Sbjct: 138 GTGHKLEELTKFYIDPVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYAGMD-- 195

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            IL   LL +   +V +  H     +  + +V+S +E TG  +D D  +++SA++ +   
Sbjct: 196 TILVSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSE 255

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
                    +    +++S ++L D L  +       +T TG+ +  A+ LE +    N +
Sbjct: 256 HYTAVAR-YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNAL 313

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            K  +E ++    + T+  +     +    RVH   +     T R+++  P+ QN+P   
Sbjct: 314 AKAAIEAKKWGSWEKTWVRNFIERRDA-NDRVHPGINPLQARTARMSTNNPSAQNLPAGD 372

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
                +RR F++   + ++S DY   ELR+LA +A    + Q F+++ D+H++ A     
Sbjct: 373 ---WMVRRCFLADSGQLMVSVDYQAQELRVLAALANDRTMIQAFKDNADLHQITA----- 424

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
                 S   R+  K +NF+ ++G  P  +A Q  I   EA   I  +   +P +    +
Sbjct: 425 ----DASGVDRKVGKMVNFAYVFGSGPSTIAAQAGITFPEAKRVIAGFEQSYPEVTALSK 480

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             +      GYV T  GRR+  D               AA+N  +Q ++ D+T  A++ +
Sbjct: 481 SLQREAANLGYVITPTGRRLPVDPDR----------GYAALNYMVQSTSRDVTASAVLRL 530

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
           H    +  +   + L IHDE++  VPE E    ++ I   ME+     +    P    + 
Sbjct: 531 H----EAGMTPMIRLVIHDEVLASVPEAEAEVTAKEIGRIMEQTFRGVLINTDP---EVG 583

Query: 968 VSNNWQ 973
              +W 
Sbjct: 584 -GRSWG 588


>gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2]
 gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2]
          Length = 608

 Score =  224 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 121/531 (22%), Positives = 227/531 (42%), Gaps = 57/531 (10%)

Query: 465 IGHNIKYDKLVLHR-YGISMR----GFEDIMLMSYVLDS-----GRSSHDIASIAQKWLS 514
           + HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++ 
Sbjct: 93  VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYID 152

Query: 515 YTRKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
               E +K+      +K     DKI       D   + +A  +   IL   LL +   +V
Sbjct: 153 PATAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYAGMD--TILVSRLLGKVAPLV 210

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +  H     +  + +V+S +E TG  +D D  +++SA++ +        +   +    +
Sbjct: 211 PESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRK-AEHYTAVARYAYGVDS 269

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++S ++L D L  +       +T TG+ +  A+ LE +    N + K  +E ++    + 
Sbjct: 270 VNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEK 328

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           T+  +     +    RVH   +     T R+++  P+ QN+P        +RR F++ P 
Sbjct: 329 TWVRNFIERRDADD-RVHPGINPLQARTARMSTTSPSAQNLPAND---WMVRRCFLADPG 384

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           + ++S DY   ELR+LA +A    + + FE   D+H++ A           +   R+  K
Sbjct: 385 QLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTA---------DAAGMDRKVGK 435

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
             NF  +YG    +LAT   I   EA   +  +   +PG+ +  +  +      GYV T 
Sbjct: 436 MANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTDLSKSLQREAANLGYVITP 495

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GRR+  D               AA+N  +Q ++ D+T  A++ +H    +  +   + L
Sbjct: 496 TGRRLPVDPDR----------GYAALNYMVQSTSRDVTASAVLRLH----EAGMTPMIRL 541

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            IHDE++  VPE E    ++ I   ME+     +    P    +    +W 
Sbjct: 542 VIHDEVLASVPEAEAEVTAKEIGRIMEQTFRGVLINTDP---EVG-GRSWG 588


>gi|315444011|ref|YP_004076890.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Mycobacterium sp. Spyr1]
 gi|315262314|gb|ADT99055.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Mycobacterium sp. Spyr1]
          Length = 324

 Score =  224 bits (572), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 142/318 (44%), Gaps = 33/318 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+++  P      DG PVNA+ GF + +  ++   R   +      
Sbjct: 10  NSPLVLLDGASMWFRSYFGVPSSITAPDGRPVNALRGFLDAVSTVIARERPHRLVVCRD- 68

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
             D     +R ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 69  --DDWRPQWRVDLIPSYKAHRVLEENPADGPDVEEVPDELTPQVDMIMEILDAFGIATAG 126

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
              +EADD++ T    A +E   V ++S D+DL+QLV                 K  K  
Sbjct: 127 AAHYEADDVLGTLA--AAEERDPVVVVSGDRDLLQLVRDEPVPVRVLYLGKGLAKAVKWG 184

Query: 165 IEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              V   +G+P E+     V L  L GD  D +PG+PGIG KTAA LL ++ +LENI+  
Sbjct: 185 PAEVADTYGVPLERAGSAYVELALLRGDPSDGLPGVPGIGEKTAATLLAQHNSLENIVAA 244

Query: 221 ASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPIT--IPLEHLILEDCNGPRLISF 275
           A        K  R+ +L  ++    +  +V + TD  +      + L L   +  +++  
Sbjct: 245 AHDPASTLSKAHRKKLLAASDYIEKAEPVVRVATDAELDWSTDGDALPLSARDPRKVVEL 304

Query: 276 LKALEFTKLINRVATTYD 293
            +    +  I R+    D
Sbjct: 305 AERYGVSSSIGRLQAALD 322


>gi|261344748|ref|ZP_05972392.1| hypothetical protein PROVRUST_06007 [Providencia rustigianii DSM
           4541]
 gi|282567191|gb|EFB72726.1| exodeoxyribonuclease IX [Providencia rustigianii DSM 4541]
          Length = 255

 Score =  224 bits (572), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 128/268 (47%), Gaps = 17/268 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R  +A         G P              +      + A+H   +F
Sbjct: 3   HLLIIDALNLIRRI-HAV-------QGSPCG------ETCLSAISQLITHTDATHIVAVF 48

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+E  PDYKA R  +PE L  +LP +    +  GI   + +G EADD+ AT
Sbjct: 49  DEDGRHHSWRHEKLPDYKAGRQPMPEELQTELPSLVSQFEENGIHCWQSEGDEADDLAAT 108

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SP   + D  ++  +D+  +  ++G+ PE++    
Sbjct: 109 LAKRIASAGHTVTIVSTDKGYCQLLSPNLRIRDYFQKRWLDVPFIENEFGVKPEQLPDYW 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PG+ GIG K+A  LLQ + N+EN+  N   +++K  ++ +    E A + 
Sbjct: 169 GLAGISSSKVPGVAGIGAKSATTLLQRFQNIENLYANFDSLEEKW-QKKLANNQEIAMIC 227

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           R +  L+TD+ +   L  L  ++    +
Sbjct: 228 RDIATLKTDIILKGNLNQLRYQEAKPSK 255


>gi|113971051|ref|YP_734844.1| exonuclease IX [Shewanella sp. MR-4]
 gi|114048276|ref|YP_738826.1| exonuclease IX [Shewanella sp. MR-7]
 gi|123030445|sp|Q0HSY6|XNI_SHESR RecName: Full=Protein Xni
 gi|123324832|sp|Q0HGN0|XNI_SHESM RecName: Full=Protein Xni
 gi|113885735|gb|ABI39787.1| 5'-3' exonuclease [Shewanella sp. MR-4]
 gi|113889718|gb|ABI43769.1| 5'-3' exonuclease [Shewanella sp. MR-7]
          Length = 260

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 131/263 (49%), Gaps = 11/263 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +        + ++  C  L ++          +H A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDENDMDS--LTDRVSVACTKLLRI-------HHPTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++   ++  I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPDYKKGRKPMPEPLAAGLSALQEHLKSLPIQSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL  P    +D   ++ ++I  + +K G+   + + L A
Sbjct: 112 AMKTAKAQGEAVIVSTDKGFSQLNHPRISQWDHFNQQYLNIAELEQKLGVDRNQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ +  L  +  + S +   K+ + + E  + ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLRTFRTLATLFSSLSNL-GAKQAKKLAEGRDMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDC 267
           KL  L+TD+P+ I L    +   
Sbjct: 231 KLAQLQTDLPLNINLRDFRVNGP 253


>gi|217974146|ref|YP_002358897.1| exonuclease IX [Shewanella baltica OS223]
 gi|254799414|sp|B8EAT2|XNI_SHEB2 RecName: Full=Protein Xni
 gi|217499281|gb|ACK47474.1| 5'-3' exonuclease [Shewanella baltica OS223]
          Length = 262

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +          ++  C  L ++          +H A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDETDMQS--LTERVSSACTKLLRV-------HRPTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YP+YK  R  +PE L   L  ++    A  I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPNYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL       +D   ++ +DI  + +K G+   + + L A
Sbjct: 112 AIKTAKAQGEAIIVSTDKGFSQLNHRQISQWDHFNQQYLDIAALEQKLGVERSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ + +L  +  + S +   K+ + + E  E ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNL-GAKQAKKLAEGKEMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPR 271
           KL  L+TD+P+ I L+   + D    +
Sbjct: 231 KLAQLQTDLPLNINLKDFRVIDSPPEK 257


>gi|12045117|ref|NP_072928.1| 5'-3' exonuclease, putative [Mycoplasma genitalium G37]
 gi|2494183|sp|Q49406|EX53_MYCGE RecName: Full=5'-3' exonuclease
 gi|1045955|gb|AAC71483.1| 5'-3' exonuclease, putative [Mycoplasma genitalium G37]
 gi|166079091|gb|ABY79709.1| 5'-3' exonuclease, putative [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 291

 Score =  224 bits (571), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 16/298 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVN-AIAGFCNMLWKLLQNSRKESI 57
           M+K     L+DG+S  YRA++AT   +   K + LP N AI     M W L+    K ++
Sbjct: 1   MKKA---ILIDGNSLAYRAYFATWKQVEYAKQNNLPFNNAIRTMLLMCWNLI----KANV 53

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +  V FD  A TFR++IY  YK  R K P  LL Q+PL++ A    G    E  GFEA
Sbjct: 54  YQYGIVSFDTKAPTFRDQIYEGYKQKRVKTPVELLVQIPLIKQALVYLGFLVCEKDGFEA 113

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIK-KW 172
           DD+I +Y  +  K+   V I S+D+D++QLV+  T ++  +K  K     + E+     +
Sbjct: 114 DDLIGSYANLFTKQEITVDIYSSDRDMLQLVNAFTNVFLCIKGTKEMVMYNNENFKSLFY 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           G+ P ++V  + L GD+ DN+ GI GIG      LLQ+YG ++NI  N + +   + ++ 
Sbjct: 174 GLAPYQVVEYKGLVGDNSDNLAGIKGIGPIKGIELLQQYGTIDNIYTNFNNL-PNQLQKL 232

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           +    E A+    L  ++TD+ +   ++   L+      LI  L   +   L+ + + 
Sbjct: 233 LNNQKEIAKTFSFLAKIKTDIELDQNIDLTGLKPIQKQALIQLLSENKINTLVEKFSK 290


>gi|269958049|ref|YP_003327838.1| 5'-3' exonuclease [Xylanimonas cellulosilytica DSM 15894]
 gi|269306730|gb|ACZ32280.1| 5'-3' exonuclease [Xylanimonas cellulosilytica DSM 15894]
          Length = 313

 Score =  224 bits (571), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 140/315 (44%), Gaps = 28/315 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RAFY  P   R   G PVNAI G  + +  L+   R E + + +    D
Sbjct: 3   LLLLDTASLYFRAFYGVPDSLRSPRGEPVNAIRGLLDTIAFLVTEHRPERLVACWD---D 59

Query: 67  YPAVTFRNEIYPDYKANR-------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
                +R ++   YKA+R              ++P++L PQ+P++    +A GI  I   
Sbjct: 60  DWRPQWRVDLIGSYKAHRVAVPDAGPGGTDVEEVPDLLSPQVPVIASVLEAIGIARIGSP 119

Query: 114 GFEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPT--TCLYDTVKE----EKIDIE 166
           GFEADD+I T        G    +I++ D+DL QLV       +    +     + +D  
Sbjct: 120 GFEADDVIGTLVAREVAAGRRPTSIMTGDRDLFQLVDDDAGVRVLYPARGVRDPDVVDQA 179

Query: 167 HVIKKWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-- 223
            + +K+G+P  +    +  L GD  D +PG+ GIG KTAA LL  +G L+ +L       
Sbjct: 180 RLAEKYGVPSGDAYADMAVLRGDPSDGLPGVVGIGEKTAAGLLARFGTLDGVLAARDSGF 239

Query: 224 -IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
            +   ++R  + E AE   ++  +V + TD P+    + L         L    +     
Sbjct: 240 GLTPAQQR-RLTEAAEYLTVAPTVVRVATDAPLPDFDDALPRAAAYPEALQLLTERWGLR 298

Query: 283 KLINRVATTYDCDAA 297
             ++RV T       
Sbjct: 299 SSVSRVLTALAASGG 313


>gi|167957257|ref|ZP_02544331.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7c]
          Length = 265

 Score =  224 bits (571), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 85/251 (33%), Positives = 133/251 (52%), Gaps = 7/251 (2%)

Query: 54  KESIASHFAVIFDYPAVTFRNEI--YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE 111
           K+    +  V +D    + R  +   P YKA R   P     Q+P++     AFG P  E
Sbjct: 3   KKLEPDYVCVAWDKKHTSIRKRLNILPTYKAGRKTPPSDFFNQIPILHDLLDAFGWPLYE 62

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEH 167
              +EADDI+ T + +AE+ G    ++++D D++QLVSP T +Y   +     E+ +   
Sbjct: 63  FDDYEADDIMGTISLMAEQHGIETCLVTSDLDMLQLVSPLTKVYAMKRGLSNIEEYNPSI 122

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           +  K GI   + + L+AL GDS DNIPG+PGIG KTA  LL+E+ +L+NI  N   IK  
Sbjct: 123 LENKLGIKVSQFLDLKALKGDSSDNIPGVPGIGDKTAVALLKEFESLDNIYKNIEIIKPA 182

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
             +  +L   E+A +SRK+  +  D P+   L+ + + + +  +L   L+ LEF  LI R
Sbjct: 183 WAK-KLLAGKESAYISRKVGQIWRDAPVDFDLKSMDIHNLDVVKLSDQLRKLEFNSLIKR 241

Query: 288 VATTYDCDAAN 298
           + T    +  N
Sbjct: 242 LPTAMQDENLN 252


>gi|149408291|ref|YP_001294570.1| hypothetical protein ORF062 [Pseudomonas phage M6]
          Length = 664

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 126/675 (18%), Positives = 249/675 (36%), Gaps = 135/675 (20%)

Query: 385 ETIGSASFKIITDTMDAFHSKP----------IAIAISTLDQKDDTSFKVETIFIDLSVH 434
           E     +    T   D     P            I+ +  D            ++ +   
Sbjct: 28  EGAKRVAIDCETRDPDLRKLGPGAGRRPNSYITGISFAIEDGPGG--------YLPIRHE 79

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS---MRGFEDIML 491
                 G N   + +L+YL+   +      +G N+ YD   L   GI    +R F DI +
Sbjct: 80  G-----GGNLPLEGVLAYLRAQAKVFTGDLVGANLPYDLDFLAGDGIEFERVRYFRDIQI 134

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKE-------ILKSRKSSIPIDKISDSQVQEHAIE 544
              ++     S+ + +IA++W  + + E       +         +  +    V ++A E
Sbjct: 135 ADPLICELHDSYSMQAIAERWGFHGKDEALLRAAAVDYGIDPKKDMWMLPAKFVGKYAEE 194

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           ++ + L +      ++  + L  VY  L+  ++ +++ +   G++ID D L  +     +
Sbjct: 195 DTRLPLNILRRQEREIDEQDLWGVY-NLESKLLPILTGLRRRGVRIDCDRLDMIERWALE 253

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP----SGAKTKTGQWKTTAQDLEQI 660
                   +  ++G +        +GD+   ++  P     G K           D E +
Sbjct: 254 KETEALAQVRSITGHRI------AVGDVWKPEVIAPALEHIGIKLNKTSQGKPNIDKELL 307

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL------------AST 708
              D+P+   +   R+++K+++T+A S+ +H+     R+H  ++             A  
Sbjct: 308 GSIDHPVADLLERARKVNKLRTTFASSVRDHMV--NGRLHGTFNQLRRQKDDESDGTAGA 365

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA------ 762
             GRL+S  PNLQ  P + +     R  ++    +   S DYSQ E R+  H A      
Sbjct: 366 AYGRLSSEHPNLQQQPARDEFAMMWRAIYLPEEGQHWASNDYSQQEPRMAVHYACLAKDL 425

Query: 763 -KITPLYQV------FENS--LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
                          + N    D H+M+A          ++   R+ AK I   + YG+ 
Sbjct: 426 IGHQAWLSAIEARDKYRNDPNTDNHQMMA---------DMAGIKRKDAKEIYLGLSYGMG 476

Query: 814 PFRLATQLRIPRSEA----------------------------------ADYIKRYFHRF 839
             ++  +L +P   A                                     +  + H+ 
Sbjct: 477 GAKMCRKLGLPTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEAAGPEGQALLDTFDHKV 536

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
           P I +  +  +   +  GY+ T+ GRR  + +                +N  IQGS+AD 
Sbjct: 537 PFIKKLAKACEARAKAVGYITTLSGRRCRFPKDKDGNYD----WTHKGLNRLIQGSSADQ 592

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-EEITTASQIIVHSMEKACLPKINL 958
           T+ AM++      +  L   +++Q+HDE+ F V + +E   A+ I+             L
Sbjct: 593 TKMAMVAC----AEAGLD--IIIQVHDEIAFSVHDMKEAAEAAHIMRTC--------TPL 638

Query: 959 RVPLKVNIKVSNNWQ 973
            +P KV++++  +W 
Sbjct: 639 ELPSKVDVEIGQSWG 653


>gi|304409481|ref|ZP_07391101.1| 5'-3' exonuclease, SAM-fold domain [Shewanella baltica OS183]
 gi|307303839|ref|ZP_07583592.1| 5'-3' exonuclease, SAM-fold domain [Shewanella baltica BA175]
 gi|304351999|gb|EFM16397.1| 5'-3' exonuclease, SAM-fold domain [Shewanella baltica OS183]
 gi|306912737|gb|EFN43160.1| 5'-3' exonuclease, SAM-fold domain [Shewanella baltica BA175]
          Length = 262

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 131/267 (49%), Gaps = 11/267 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +          ++  C  L ++          +H A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDETDMQS--LTERVSSACTKLLRV-------HRPTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++    A  I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPDYKKGRKPMPEPLAQGLDALQDHLTAMHIGSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL       +D   ++ +DI  + +K G+   + + L A
Sbjct: 112 AIKTAKAQGEAIIVSTDKGFSQLNHRQISQWDHFNQQYLDIAALEQKLGVERSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ + +L  +  + S +   K+ + +    E ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNL-GAKQAKKLAGGKEMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPR 271
           KL  L+TD+P+ I L+   + D    +
Sbjct: 231 KLAQLQTDLPLNINLKDFRVIDFPPEK 257


>gi|167624979|ref|YP_001675273.1| exonuclease IX [Shewanella halifaxensis HAW-EB4]
 gi|189030096|sp|B0TPG7|XNI_SHEHH RecName: Full=Protein Xni
 gi|167355001|gb|ABZ77614.1| 5'-3' exonuclease [Shewanella halifaxensis HAW-EB4]
          Length = 252

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 81/265 (30%), Positives = 127/265 (47%), Gaps = 17/265 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA---IAGFCNMLWKLLQNSRKESIASHF 61
           N   ++DG + + R   A P  S             + G C  L K           SH 
Sbjct: 2   NKFLIIDGMNLVRRIHAAQPNESDI-----TGLKERVNGACRKLLKF-------HQPSHA 49

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           A+++D  A+++R  ++ DYK  R  +PE L   L  ++       + +I     EADD+I
Sbjct: 50  AIVWDGDAISWRKALFEDYKKGRKPMPEALANGLVELKAYLAEHQLNSINADS-EADDVI 108

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT             I+STDK   QL  P    +D   +  + IE + KK G+   + + 
Sbjct: 109 ATLATKLTSINGEAIIVSTDKGFCQLSHPNIKRWDHFNQGYLTIEEMEKKLGVESTQFID 168

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GDS + IPG+PGIG K+A  LL+ + +L NI  +  ++   K+ + + E  + AR
Sbjct: 169 YLALAGDSGNKIPGVPGIGPKSAVELLKIFRSLANIYNSIDKV-GSKQAKKLEEGKQMAR 227

Query: 242 LSRKLVMLRTDVPITIPLEHLILED 266
           LS KLV L+TD+P+ + L+   +E 
Sbjct: 228 LSYKLVQLQTDLPLNVNLKQFRIEQ 252


>gi|238480047|ref|NP_001154673.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|332645362|gb|AEE78883.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 365

 Score =  224 bits (570), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 82/241 (34%), Positives = 128/241 (53%), Gaps = 15/241 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA------IAGFCNMLWKLLQNSRKE 55
                + L+DG+S IYRA+Y    L+R + G   +A      +    + L  L+   +  
Sbjct: 114 SSNGRVMLIDGTSIIYRAYYKL--LARLNHGHLAHADGNADWVLTIFSSLSLLIDVLK-- 169

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
            + SH AV+FD+  + FR+ +YP YK+NRP  P+ ++  L  ++ + +A  I  IE+ G 
Sbjct: 170 FLPSHVAVVFDHDGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGV 229

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQL-VSPTTCLYDTVKEEKI---DIEHVIKK 171
           EADD+I T    +   GF V ++S DKD  Q+       L  T +  ++    +E   KK
Sbjct: 230 EADDVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKK 289

Query: 172 WG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
           +G + P + V + AL GD  DNIPG+ GIG   A  L+  +G LEN+L +   IK+ K +
Sbjct: 290 FGNLEPAQFVDIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLENLLQSVDEIKEGKIK 349

Query: 231 E 231
           E
Sbjct: 350 E 350


>gi|146292392|ref|YP_001182816.1| exonuclease IX [Shewanella putrefaciens CN-32]
 gi|166918969|sp|A4Y4Y4|XNI_SHEPC RecName: Full=Protein Xni
 gi|145564082|gb|ABP75017.1| 5'-3' exonuclease [Shewanella putrefaciens CN-32]
          Length = 262

 Score =  223 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 127/260 (48%), Gaps = 15/260 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           N   ++DG + + R + A P  +          +A         KLL+        SH A
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDENDMESLKERVTSACT-------KLLRVHH----PSHIA 50

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +++D   +++R ++YPDYK  R  +PE L   L  ++       I +I     EADD+IA
Sbjct: 51  IVWDGDEISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASI-YAAAEADDVIA 109

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T      K      I+STDK   QL  P    +D   ++ +DI  + +K G+   + + L
Sbjct: 110 TLAVKTAKAQGEAIIVSTDKGFSQLNHPRITQWDHFNQQYLDIAALEQKLGVDRSQFLDL 169

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GDS + IPGI GIG K+AA LL+ +  L  +  +   +   K+ + + E  E ARL
Sbjct: 170 MALAGDSGNKIPGIAGIGPKSAAELLKTFRTLSTLFSSLPNL-GAKQAKKLAEGKEMARL 228

Query: 243 SRKLVMLRTDVPITIPLEHL 262
           S KL  L+TD+P+ I L+  
Sbjct: 229 SYKLAQLQTDLPLNINLKDF 248


>gi|291618647|ref|YP_003521389.1| Xni [Pantoea ananatis LMG 20103]
 gi|291153677|gb|ADD78261.1| Xni [Pantoea ananatis LMG 20103]
 gi|327395027|dbj|BAK12449.1| exodeoxyribonuclease IX Xni [Pantoea ananatis AJ13355]
          Length = 252

 Score =  223 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 131/266 (49%), Gaps = 21/266 (7%)

Query: 5   NHLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +HL +VD  + I R  A   +P L             G    L +LL ++R     SH  
Sbjct: 3   HHLLIVDALNLIRRLHAVQGSPCLD------------GCVAALRQLLGHTR----PSHVV 46

Query: 63  VIFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            +FD  A    +R+++ PDYK+ RP +PE L  ++P ++ A +A G+     +  EADD+
Sbjct: 47  AVFDGEARHQGWRHQLLPDYKSGRPPMPEDLQAEMPALQAAFRAAGVSCWIAEQDEADDL 106

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
            AT      + G   TI+STDK   QL++P   + D  ++  +D+  +  ++G+ P  + 
Sbjct: 107 AATLAVKMARAGHQATIVSTDKGYCQLLAPDIRIRDYFQKRWLDLPFIETEFGVAPTVLP 166

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               L G S   IPGI GIG K+A  LLQ++G+LE++     ++  K  R  +    E A
Sbjct: 167 DYWGLCGISSSKIPGIAGIGPKSARELLQQFGSLESLYQQLDQVPTKW-RNKLQTGQEMA 225

Query: 241 RLSRKLVMLRTDVPITIPLEHLILED 266
            +SR +  L+ D+ +   L  L    
Sbjct: 226 FISRDVARLKQDLVLEGNLNLLRYSG 251


>gi|254785283|ref|YP_003072711.1| 5'-3' exonuclease [Teredinibacter turnerae T7901]
 gi|237683935|gb|ACR11199.1| 5'-3' exonuclease [Teredinibacter turnerae T7901]
          Length = 301

 Score =  223 bits (569), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 13/288 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            + + ++L+D S +I+R +++ P      +  P  A+ G+   L + L+  R +    + 
Sbjct: 4   AQSDTVYLIDASIYIFRYYFSLPDNWWGREHQPTAAVYGYGRWLLRFLKAVRPK----YI 59

Query: 62  AVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           A  FD      FRNE+YP YKA+R    E L  QL   +  + A+G+       FEADD+
Sbjct: 60  ACCFDESLTSCFRNELYPGYKASRALPDESLAFQLAACKGLSAAYGLATYASPRFEADDL 119

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           IAT    + K G +V ++S DKDL Q++ +    L+D    E +D + +  K+GI PE+M
Sbjct: 120 IATLAAKSRKRGLSVCVVSRDKDLSQIIRTARDTLWDFPDREPLDSDAIFAKYGIYPEQM 179

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENI 233
               AL GD  D+IPG+ GIG KTAA LL E+G+   I  N +R+         K  + +
Sbjct: 180 ADFLALVGDPSDDIPGVAGIGGKTAAALLAEFGSWREIRRNYNRVAKCAIRGAAKLGDKL 239

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
                   LSR+L  + +D P+      +     + P L + +  L  
Sbjct: 240 AAAEAQIELSRQLARVASDAPLGARF-RVTRRPVDLPALDTTIDELGL 286


>gi|160874514|ref|YP_001553830.1| exonuclease IX [Shewanella baltica OS195]
 gi|189030095|sp|A9KTM9|XNI_SHEB9 RecName: Full=Protein Xni
 gi|160860036|gb|ABX48570.1| 5'-3' exonuclease [Shewanella baltica OS195]
 gi|315266753|gb|ADT93606.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Shewanella baltica OS678]
          Length = 262

 Score =  223 bits (569), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +          ++  C  L ++          +H A++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDETDMQS--LTERVSSACTKLLRV-------HRPTHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   L  ++    A  I +I     EADD+IAT 
Sbjct: 53  WDGDEISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL       +D   ++ +DI  + +K G+   + + L A
Sbjct: 112 AIKTAKAQGEAIIVSTDKGFSQLNHRQISQWDHFNQQYLDIAALEQKLGVERSQFLDLMA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ + +L  +  + S +   K+ + + E  E ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLKTFRSLPTLFSSLSNL-GAKQAKKLAEGKEMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPR 271
           KL  L+TD+P+ I L+   + D    +
Sbjct: 231 KLAQLQTDLPLNINLKDFRVIDSLPEK 257


>gi|120599611|ref|YP_964185.1| exonuclease IX [Shewanella sp. W3-18-1]
 gi|156630387|sp|A1RLT6|XNI_SHESW RecName: Full=Protein Xni
 gi|120559704|gb|ABM25631.1| 5'-3' exonuclease [Shewanella sp. W3-18-1]
          Length = 262

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 127/260 (48%), Gaps = 15/260 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           N   ++DG + + R + A P  +          +A         KLL+        SH A
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPNENDMESLKERVTSACT-------KLLRVHH----PSHIA 50

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +++D   +++R ++YPDYK  R  +PE L   L  ++       I +I     EADD+IA
Sbjct: 51  IVWDGDEISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASI-YAAAEADDVIA 109

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T      K      I+STDK   QL  P    +D   ++ +DI  + +K G+   + + L
Sbjct: 110 TLAVKTAKAQGEAIIVSTDKGFSQLNHPRITQWDHFNQQYLDIAALEQKLGVDRSQFLDL 169

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GDS + IPGI GIG K+AA LL+ +  L  +  +   +   K+ + + E  E ARL
Sbjct: 170 MALAGDSGNKIPGIAGIGPKSAAELLKTFRTLSTLFSSLPNL-GAKQAKKLAEGKEMARL 228

Query: 243 SRKLVMLRTDVPITIPLEHL 262
           S KL  L+TD+P+ I L+  
Sbjct: 229 SYKLAQLQTDLPLNINLKDF 248


>gi|304399245|ref|ZP_07381112.1| 5'-3' exonuclease, SAM-fold domain [Pantoea sp. aB]
 gi|304353299|gb|EFM17679.1| 5'-3' exonuclease, SAM-fold domain [Pantoea sp. aB]
          Length = 251

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 17/263 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   + G    L ++L ++R     +H   +F
Sbjct: 4   HLVIVDALNLIRRL-HAV-------QGSP--CVDGCVAALRQVLGHAR----PTHAVAVF 49

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D  A    +R+++ PDYK+ RP +P+ L  ++P ++ A +A G+        EADD+ AT
Sbjct: 50  DGEARHQGWRHQLLPDYKSGRPPMPDDLQAEMPALQEAFRAAGVSCWIAGEDEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G   TI+STDK   QL++P   + D  ++  +D+  +  ++G+ P+++    
Sbjct: 110 LAVKMAQAGHQATIVSTDKGYCQLLAPEIRIRDYFQKRWLDLPFIEAEFGVAPQRLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPGI GIG K+A  LL  +  LE +     ++  K  RE + E    A +S
Sbjct: 170 GLCGISSSKIPGITGIGPKSAKQLLTTFQTLEGVYQQLDQVPAKW-REKLAEGQHMAEIS 228

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           R++  L+ D+ +   L  L    
Sbjct: 229 RQVATLKQDLVLQGNLNTLRYTG 251


>gi|309799220|ref|ZP_07693469.1| DNA polymerase I [Streptococcus infantis SK1302]
 gi|308117154|gb|EFO54581.1| DNA polymerase I [Streptococcus infantis SK1302]
          Length = 197

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 108/200 (54%), Gaps = 11/200 (5%)

Query: 3   KENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
            +  L L+DGSS  +RAF+A        +  +GL  NAI GF  ML  LL+  +     S
Sbjct: 2   DKKKLLLIDGSSVAFRAFFALYQQLDRFKNDNGLHTNAIYGFHLMLNHLLERVQ----PS 57

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H  V FD    TFR E+Y DYK  R K P+    Q P +R      GI   E+  +EADD
Sbjct: 58  HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175
           II T   +AEK+ F VTI+S DKDL+QL    T +  + K     E    E++++K GI 
Sbjct: 118 IIGTLGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKMGIT 177

Query: 176 PEKMVCLQALTGDSIDNIPG 195
           P + + L+AL GD  DNIPG
Sbjct: 178 PTQFIDLKALMGDKSDNIPG 197


>gi|212712110|ref|ZP_03320238.1| hypothetical protein PROVALCAL_03190 [Providencia alcalifaciens DSM
           30120]
 gi|212685251|gb|EEB44779.1| hypothetical protein PROVALCAL_03190 [Providencia alcalifaciens DSM
           30120]
          Length = 251

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 17/262 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R  +A         G P              +      + A+H   +F
Sbjct: 3   HLLIIDALNLIRRI-HAV-------QGSPCG------ETCLSAISQLINHTNATHVVAVF 48

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+E  PDYKA R  +PE L  +LP +    +  GI   + +G EADD+ AT
Sbjct: 49  DEEGRHHSWRHEKLPDYKAGRQPMPESLHTELPNLVAQFEENGIHCWQSEGDEADDLAAT 108

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SP   + D  ++  +D+  +  ++G+ PE++    
Sbjct: 109 LAKRIANSGHTVTIVSTDKGYCQLLSPNLRIRDYFQKRWLDVPFIENEFGVKPEQLPDYW 168

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PG+ GIG K+A  LLQ + ++EN+  N   + ++K ++ +    + A + 
Sbjct: 169 GLAGISSSKVPGVAGIGAKSATELLQRFRSIENLYANFD-VLEEKWQKKLANQKDIAIIC 227

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  L+T++ +   L  L  +
Sbjct: 228 REIATLKTNIALKGNLNQLRYQ 249


>gi|119716884|ref|YP_923849.1| 5'-3' exonuclease [Nocardioides sp. JS614]
 gi|119537545|gb|ABL82162.1| 5'-3' exonuclease [Nocardioides sp. JS614]
          Length = 301

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 29/302 (9%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RAF+  P +    DG PVNA+ G  + + +L+ + R     +H    +D 
Sbjct: 1   MLLDSASMYFRAFFGVPEIL-APDGTPVNAVRGLLDFIARLVADYR----PTHLVACWDN 55

Query: 68  P-AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                +R ++ P YKA+R            ++P  L  Q+P++R    AFGI  +   G+
Sbjct: 56  DWRPQWRVDLLPSYKAHRVEAERTGEPDVEEVPGPLEVQVPIIREVLAAFGICVLGADGY 115

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT------TCLYDTVKEEKIDIEHVI 169
           EADD+I +    A +    V +++ D+DL QLV                K E++  + V 
Sbjct: 116 EADDVIGSLATQARQ---PVDVVTGDRDLFQLVDDEADVRVLYIARGVGKHERVTNDWVR 172

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA---SRIKQ 226
            K+GI   +      L GD+ D +PG+ G+G KTAA LL  +G++  I+  A        
Sbjct: 173 TKYGIDARQYADFATLRGDASDGLPGVAGVGEKTAATLLGRFGDMAGIVAAALDPDSDMG 232

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
              R  I   A    ++  +V +  D+ +      L  +  + PRL            + 
Sbjct: 233 PGPRGRIKAAAAYLEVAPTVVAVARDLDLGPADTRLPDQPRDLPRLADLGHRWGIESPVQ 292

Query: 287 RV 288
           R+
Sbjct: 293 RL 294


>gi|282598885|ref|YP_003358435.1| N4 gp39-like protein [Pseudomonas phage LIT1]
 gi|259048645|emb|CAZ66294.1| N4 gp39-like protein [Pseudomonas phage LIT1]
          Length = 871

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 136/695 (19%), Positives = 274/695 (39%), Gaps = 92/695 (13%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++N +Y    +    ++ + +L      S  I   ++  F S    I  +  +     + 
Sbjct: 159 LHNVTYIYRGHVSQAREALARLMDKPEISCDIEGFSLSMFDSGIATIGFAWNEH---DAV 215

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL------ 476
           +++  + ++ +       G      E+   LK FF       I H   +D  VL      
Sbjct: 216 QIQCDYREM-IQDENKHHGYYEPNAEMREVLKWFFTEYPGRIIYHRANHDVKVLIYTLFM 274

Query: 477 --------HRYGISM--RGFEDIMLMSYV-LDSGRS-SHDIASIAQKWLSYTRKEILKSR 524
                      G+ +     +D  +++Y+ L+S    S+ +  + Q+      ++ +K  
Sbjct: 275 EHDLDKEGMHRGLEIMTPRMDDTKIIAYLALNSTADVSYSLKDLGQEHAGNWAQDDIK-- 332

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
                I  I+   + ++   ++   + +     P ++ ++   +Y  L K  +D++ QME
Sbjct: 333 ----DIRLITLDDLMKYNAVDAVTTVWVKNKYYPIMVQDQQDALYHGLFKDSLDLIIQME 388

Query: 585 ITGIQIDQDLLKQVSAEIS--------------------------------KNLLSLEEN 612
           + G+ ++   + +V+ E++                                  L +++  
Sbjct: 389 LVGMPMNPRKITEVNTELNNLRDGYHNTVMSHPAVAKVEVLIQTSEMEKANAKLKTIQHP 448

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-----NCGDNPI 667
           +   S  +FN +S  Q+  +L   L  P    T T Q  T+   L+++           +
Sbjct: 449 LSKFSHIRFNPNSGPQVARLLHEVLDLPVLDVTATKQPSTSGGTLKKLLNHIKAEPYKDL 508

Query: 668 IKNILEWRQLSKIKSTYADSLP--NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           I+ +++   + K+ S +  +             +H  ++L  T++GRL+S +PNLQN+P 
Sbjct: 509 IQALMDLGAVEKVISAFMPAFKAGRMKADGMMYLHGSFNLGGTISGRLSSSDPNLQNLPA 568

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
            +  G+ ++  F +PP      AD++ +E RI A + +     +V+ +  D H M     
Sbjct: 569 GSTYGKLVKSLFCAPPGFLFGGADFAALEDRINALLTQDPNKIKVYTDGYDGHSMRTFAF 628

Query: 786 FGVNIE-------------KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
           +    +             KV P +R  AKT +F + YG S   L  Q+     EA +  
Sbjct: 629 WPDKCDGIVDTVDSINSIQKVYPDLRSKAKTPHFLLQYGGSWMGLVRQVGFSDEEAQEIE 688

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             Y   +   +E++    +   + GYVE  F  R+    + S    ++   + AA  +  
Sbjct: 689 TNYNKLYRVSNEWVAGEIDKATKTGYVELAFNLRLRTPLLGSTILGLKATPKEAAAESRS 748

Query: 893 QGSAAD------ITRRAMISVHKSLED--HKLATKMLLQIHDELVFEVP--EEEITTASQ 942
            G+A        +T RA +   K L D  +KL  +++  IHD +    P   +     + 
Sbjct: 749 AGNAVSGQSWGLLTNRAAVEFRKLLLDSPYKLKVEIISLIHDAIYVMWPDDPDVTVWVNN 808

Query: 943 IIVHSMEKACLPKIN-LRVPLKVNIKV-SNNWQEE 975
            +   M     PKIN  RVPL  N+ +   +W+E 
Sbjct: 809 TLCKCMAWQEDPKINDKRVPLGANLDIFWPSWREA 843


>gi|323498638|ref|ZP_08103630.1| flap endonuclease-like protein [Vibrio sinaloensis DSM 21326]
 gi|323316336|gb|EGA69355.1| flap endonuclease-like protein [Vibrio sinaloensis DSM 21326]
          Length = 258

 Score =  222 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/264 (29%), Positives = 127/264 (48%), Gaps = 13/264 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N IA       + L     ES  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDP---------NDIARTITTTSRTLNKIISESQPSHMIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P+YK NR  +PE L+  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQERGWRAEILPEYKQNRKPMPEPLMQGLEAIQDAWWHLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LAMKVANHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDDPFIEKEFGVKPTQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PG+G K A  +L ++  +E    +       K R+ + ++ ++AR  
Sbjct: 175 GLTGVSSSQVPGVPGVGPKAAKEILTQFATIEEAFAS--EELAAKYRKKLDQHIDSARRC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDC 267
           +++  L+TD+ +   L+ +     
Sbjct: 233 KQIAALKTDIELGFNLQDIRFTGP 256


>gi|238918762|ref|YP_002932276.1| hypothetical protein NT01EI_0824 [Edwardsiella ictaluri 93-146]
 gi|259710447|sp|C5BHA5|XNI_EDWI9 RecName: Full=Protein Xni
 gi|238868330|gb|ACR68041.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 253

 Score =  222 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 134/261 (51%), Gaps = 17/261 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P        +     L+     +  SH   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSPCG------DACSAALRQLVGHTTPSHAVAVF 49

Query: 66  D--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    A ++R+ + P YKA R  +P+ L  ++  +R A  A G+      G EADD+ AT
Sbjct: 50  DQDDRAESWRHRLLPGYKAGRQAMPDALAQEMESLRAAFTAQGVACWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y   + G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ P+++    
Sbjct: 110 LAYKVAQGGHRVTIVSTDKGYCQLLSPQIQIRDYFQKRWLDLPFVQREFGVAPQQLTDFW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G     IPGI GIG KTAA LL+E+G+LE +  + +++ + + R+ + E  E A + 
Sbjct: 170 GLAGIGSSKIPGISGIGAKTAAALLKEFGSLEALYQHLAQVPE-RWRQRLTEQREMAEIC 228

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           R++  L+TD+ +   L+ L L
Sbjct: 229 RRVATLQTDLALHGNLQQLRL 249


>gi|212636417|ref|YP_002312942.1| exonuclease IX [Shewanella piezotolerans WP3]
 gi|226733939|sp|B8CS65|XNI_SHEPW RecName: Full=Protein Xni
 gi|212557901|gb|ACJ30355.1| 5'-3' exonuclease [Shewanella piezotolerans WP3]
          Length = 255

 Score =  222 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/264 (30%), Positives = 126/264 (47%), Gaps = 11/264 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R   A P  +          + G C  L K           SH A++
Sbjct: 2   NKFLILDGMNLVRRIHAAQPNEADISGLKER--VHGACKKLLKF-------HQPSHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D  A+++R  +Y DYK  R  +PE L   L  ++       I ++E    EADD+IAT 
Sbjct: 53  WDGNAISWRKALYEDYKKGRKPMPEALSNGLGDIKSYLAEHHIASLEADS-EADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                  G    I+STDK   QL  P    +D   +  + +E + +K G+  ++ +   A
Sbjct: 112 ATKLVSIGGEAIIVSTDKGFCQLKHPNIKQWDHFNQTYMTVEAMEQKLGVEHKQFIDYLA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPG+PGIG K+A  LL+ + +L NI  +  ++   K+ + +      ARLS 
Sbjct: 172 LAGDSGNKIPGVPGIGPKSAVELLKIFRSLANIYSSIEQV-GSKQAKKLEAGKHLARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDCN 268
           KLV L+ D+P+   L+   L   N
Sbjct: 231 KLVQLQLDMPLNANLKQFRLPKAN 254


>gi|119775554|ref|YP_928294.1| exonuclease IX [Shewanella amazonensis SB2B]
 gi|156630383|sp|A1S8B8|XNI_SHEAM RecName: Full=Protein Xni
 gi|119768054|gb|ABM00625.1| 5'-3' exonuclease [Shewanella amazonensis SB2B]
          Length = 253

 Score =  222 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/263 (31%), Positives = 132/263 (50%), Gaps = 13/263 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIA-GFCNMLWKLLQNSRKESIASHFAV 63
           N L ++DG + + R   A P        +    +         KLL+  +     +H A+
Sbjct: 2   NRLLIIDGLNLVRRIHAALPDEGD----MDT--LYDRVAQACRKLLRGHQ----PTHCAI 51

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           ++D  A+++R  +Y DYK  R  +PE L   LP ++   +   + ++     EADDIIAT
Sbjct: 52  VWDGDAISWRKHLYEDYKKGRKPMPEALAKGLPALKTKLETLDVHSVNADS-EADDIIAT 110

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G    I+STDK L+QL+SP    +D    +  DIE    K GI   +++   
Sbjct: 111 LACKLAATGGEAIIVSTDKGLLQLMSPHIRQWDHFAGQFFDIEAFEAKLGIERHQLLDYI 170

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GDS + IPGIPGIG K+A+ LL+ Y +L N+  +   +   ++   + E  + ARLS
Sbjct: 171 ALCGDSGNKIPGIPGIGPKSASELLRTYRSLANLYHSLGTL-GSRQANKLREGRDMARLS 229

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
            KL  L+T++P+ + L  L +  
Sbjct: 230 YKLAKLQTELPLHLKLSDLRVNP 252


>gi|37679067|ref|NP_933676.1| exonuclease IX [Vibrio vulnificus YJ016]
 gi|81758154|sp|Q7MN34|XNI_VIBVY RecName: Full=Protein Xni
 gi|37197809|dbj|BAC93647.1| 5'-3' exonuclease [Vibrio vulnificus YJ016]
          Length = 259

 Score =  222 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P  +        N I   C  L +++  S      +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDPTDIA-----NTIQNTCRTLQRIISESH----PTHIVAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P+YK  R  +PE LL  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHLGSDRGWRAEILPEYKQGRKPMPEPLLNGLEKIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P+++    
Sbjct: 115 LACKVAQHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDQPFIEQEFGVKPQQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   + GIPGIG K A  +L ++ ++E   ++      KK R    ++ E AR  
Sbjct: 175 GLTGISSSQVTGIPGIGPKAAKEILSQFDDIEQAFLSPD--LPKKYRTKFDQHIELARRC 232

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ L  
Sbjct: 233 KRVSALKTDIELGFNLQDLRF 253


>gi|326382291|ref|ZP_08203983.1| 5'-3' exonuclease [Gordonia neofelifaecis NRRL B-59395]
 gi|326199021|gb|EGD56203.1| 5'-3' exonuclease [Gordonia neofelifaecis NRRL B-59395]
          Length = 313

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 29/317 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     + L+DG+S  +R+FYA P      DG PVNA+ GF + +  L+   R   +   
Sbjct: 1   MIMTGSVMLLDGASLWFRSFYALPEKMTAPDGRPVNAVRGFVDTIAALVTTHRPTRLVVC 60

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR--------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
             + +      FR E+ P YKA+R         ++P+ L PQ+ ++    +  GI     
Sbjct: 61  LDLDW---RPAFRTELIPSYKAHRVAAEGDGAEEVPDTLTPQVDMILDVLRCAGIATSGA 117

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDI 165
           +G EADD+I T      +    V ++S D+DL+Q+V+                K E +  
Sbjct: 118 RGCEADDVIGTLA--FHEAVDDVLVVSGDRDLLQVVADDPVPVRVLYVGRGLAKAELMGP 175

Query: 166 EHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
           E V  K+G+P ++       +  L GD  D +PG+PGIG KTAA LL ++ +L+ +   A
Sbjct: 176 EEVSAKYGVPVDRAGVAYAEMSILRGDPSDGLPGVPGIGEKTAAKLLTQFASLDALESAA 235

Query: 222 SRIKQK---KRRENILEYAETARLSRKLVMLRTDVPI--TIPLEHLILEDCNGPRLISFL 276
                    + R +IL   E    +R +V +RTD     +   + L     +   L   +
Sbjct: 236 GDPTAPVPTRARNSILNSVEYLAAARTVVAVRTDADTIDSTDSDALPPAPADRAGLDRLV 295

Query: 277 KALEFTKLINRVATTYD 293
             L     I R+A   +
Sbjct: 296 DELGIDASIGRLAKALE 312


>gi|308187959|ref|YP_003932090.1| 5'-3' exonuclease [Pantoea vagans C9-1]
 gi|308058469|gb|ADO10641.1| 5'-3' exonuclease [Pantoea vagans C9-1]
          Length = 251

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 130/263 (49%), Gaps = 17/263 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   + G    L ++L ++R     +H   +F
Sbjct: 4   HLVIVDALNLIRRL-HAV-------QGSP--CVDGCVAALRQVLGHAR----PTHAVAVF 49

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D  A    +R+++ PDYK+ RP +P+ L  ++P ++ A ++ G+        EADD+ AT
Sbjct: 50  DGEARHQGWRHQLLPDYKSGRPPMPDDLQAEMPALQEAFRSAGVSCWIAGEDEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G   TI+STDK   QL++P   + D  ++  +D+  +  ++G+ P+ +    
Sbjct: 110 LAVKMAQAGHLATIVSTDKGYCQLLAPEIRIRDYFQKRWLDLPFIEAEFGVAPQLLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPGI GIG K+A  LL E+  LE I     ++  K  RE + E  + A +S
Sbjct: 170 GLCGISSSKIPGITGIGPKSAKQLLAEFHTLEGIYQQLDQVPAKW-REKLAEGQQMAEIS 228

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           R++  L+ D+ +   L  L    
Sbjct: 229 RQVATLKRDLVLQGNLNTLRYTG 251


>gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1264

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 97/287 (33%), Positives = 145/287 (50%), Gaps = 17/287 (5%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKT---------DLGQKIRRAFISPPTKKLISAD 749
            +H  +    T TGRL+ +EPNLQN+P            +     RR F++     L+S D
Sbjct: 971  LHPNFLQEGTDTGRLSCVEPNLQNLPRNGITSTEEEGEEDLLGFRRCFVAAAGCVLLSID 1030

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
            Y QIELR+LAH+     L +   +S DIH+ +A  +F      VS + R  AK + F ++
Sbjct: 1031 YQQIELRVLAHLCGDPALVKALTSSADIHQTIAEVVFKKKP--VSTEERSLAKRVVFGVL 1088

Query: 810  YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
            YG  P  LAT + +    A        + FPGI+ Y  +     R NG+V T+ GR  + 
Sbjct: 1089 YGAGPKTLATHMGVTVDRALHITSLLTNAFPGINTYHRRVIAETRANGFVRTLSGRLRYL 1148

Query: 870  DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL--EDHKLATKMLLQIHDE 927
             +I S   S R+  ER A N+ +QGSAAD+ + AM++V K +     +    +L QIHDE
Sbjct: 1149 PDICSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDE 1208

Query: 928  LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            +VF V +E + T   ++  +M  A      L VPL V +K   +  +
Sbjct: 1209 MVFMVRKEHLRTVVPLLSSAMSHAM----QLLVPLSVTVKFGTSLGD 1251



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 67/175 (38%), Gaps = 17/175 (9%)

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +  Q         +  ++  L   L  + LL  + R +K +  +++ ++  G+ +D  
Sbjct: 686 PLTPAQRQLAHQVYYLATVYRSLYGLLGSKGLLQAFLRQEKRIAPLLALLKYNGMPVDLH 745

Query: 594 LLKQVSAEISKNLLSLEENIYDLS---GEKFNLSSPKQLGDILFTKLKF----------- 639
            +++        +       + L    GE+FN+ S  Q    L+  L+            
Sbjct: 746 EVRRYQMSCETEMARQRGLAHKLVPELGEEFNIQSHDQCRKALYEVLQLGKYLVQSESAE 805

Query: 640 ---PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
               +G     G   +TA+D  +     +     +L +R++SK+  TY + + ++
Sbjct: 806 AVGTTGLIITKGGRLSTAEDTLRALARHHEFPACLLRYRKVSKLMQTYIEGMMSY 860


>gi|254230379|ref|ZP_04923762.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395017|ref|YP_003286871.1| exodeoxyribonuclease IX [Vibrio sp. Ex25]
 gi|151937085|gb|EDN55960.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262338611|gb|ACY52406.1| exodeoxyribonuclease IX [Vibrio sp. Ex25]
          Length = 260

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 131/268 (48%), Gaps = 13/268 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEANPTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ N+E    +       K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFENIEAAYASED--LAPKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+ D+ +   L+ +     N   
Sbjct: 233 KRVAALKCDIELGFNLQDIRFTGPNKAE 260


>gi|117618346|ref|YP_855694.1| exodeoxyribonuclease IX [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559753|gb|ABK36701.1| exodeoxyribonuclease IX [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 301

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 85/268 (31%), Positives = 129/268 (48%), Gaps = 8/268 (2%)

Query: 2   QKENHLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
               HL ++D  + I R  A  A   L+     +   A     N   KLL  S      +
Sbjct: 37  NPRPHLLIIDALNLIRRLHAVQAQQALTPAQALIATRA--NLINTCRKLLAASE----PT 90

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H   +FD    ++R E+YP YK  R  +P  L   L  ++ A    G+ A+  Q  EADD
Sbjct: 91  HVIAVFDGEVHSWRKEVYPAYKEGRTPMPTELREGLNELQDAFWECGVDALLSQTDEADD 150

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT      + G   TIISTDK   QL+ P   + D   +  +D   V +++G+ P ++
Sbjct: 151 LIATLATGIAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAFVEQQYGVAPAQL 210

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V   ALTG    NI G+PGIG KTA  LLQ+YG+L ++L    +    K    + ++ + 
Sbjct: 211 VDFWALTGIGGSNIKGVPGIGPKTATQLLQQYGDLASLLAACQQEDAAKALLKLRQHQDE 270

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDC 267
           A L+++LV L+ D+P+   L  +     
Sbjct: 271 ALLAQRLVRLQRDIPLGFNLREIRYPPA 298


>gi|170727796|ref|YP_001761822.1| exonuclease IX [Shewanella woodyi ATCC 51908]
 gi|226733940|sp|B1KQX1|XNI_SHEWM RecName: Full=Protein Xni
 gi|169813143|gb|ACA87727.1| 5'-3' exonuclease [Shewanella woodyi ATCC 51908]
          Length = 252

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 125/262 (47%), Gaps = 11/262 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R   A P           N + G    +    +   K    SH A++
Sbjct: 2   NTFLIIDGLNLVRRIHAAQPNE---------NDVNGLDARVASACKKLLKYHQPSHVAIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D  A ++R  +Y DYK  R  +PE L   LP ++       + +I+ +  EADD+IAT 
Sbjct: 53  WDGDATSWRKTLYEDYKKGRKPMPEALAKSLPALKTHLSELNVNSIDAEA-EADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                       I+STDK   QL       +D   +  I IE   +K G+   + +   A
Sbjct: 112 ATKLVNNQGKAIIVSTDKGFTQLTHTNIERWDHFNQAYITIEQREEKLGVERTQFIDYLA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPG+PGIG K+A+ LL+ + +L N+  +  ++   K+ + + E  + ARLS 
Sbjct: 172 LAGDSGNKIPGVPGIGPKSASELLKIFRSLSNLYGSLEQV-GAKQAKKLEEGKQMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILED 266
           KLV L+T++P+   L    L  
Sbjct: 231 KLVQLQTEIPLNANLSQFRLPQ 252


>gi|319425692|gb|ADV53766.1| Exonuclease IX [Shewanella putrefaciens 200]
          Length = 262

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 127/260 (48%), Gaps = 15/260 (5%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           N   ++DG + + R + A P  +          +A         KLL+        SH A
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPNENDMESLKERVTSACT-------KLLRVHH----PSHIA 50

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +++D   +++R ++YPDYK  R  +PE L   L  ++       I +I     EADD+IA
Sbjct: 51  IVWDGDDISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASI-YAAAEADDVIA 109

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T      K      I+STDK   QL  P    +D   ++ +DI  + +K G+   + + L
Sbjct: 110 TLAVKTAKAQGEAIIVSTDKGFSQLNHPRITQWDHFNQQYLDIAALEQKLGVDRSQFLDL 169

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GDS + IPGI GIG K+AA LL+ +  L  +  +   +   K+ + + E  E ARL
Sbjct: 170 MALAGDSGNKIPGIAGIGPKSAAELLKTFRTLSTLFSSLPNL-GAKQAKKLAEGKEMARL 228

Query: 243 SRKLVMLRTDVPITIPLEHL 262
           S KL  L+TD+P+ I L+  
Sbjct: 229 SYKLAQLQTDLPLNINLKDF 248


>gi|322831576|ref|YP_004211603.1| 5'-3' exonuclease, SAM-fold domain protein [Rahnella sp. Y9602]
 gi|321166777|gb|ADW72476.1| 5'-3' exonuclease, SAM-fold domain protein [Rahnella sp. Y9602]
          Length = 250

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/264 (30%), Positives = 135/264 (51%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R  A   +P L                N + +L+Q+++     +H   
Sbjct: 4   HLLIIDALNLIRRIHAVQGSPCLITCQ------------NAIGQLIQHTQ----PTHAVA 47

Query: 64  IFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD    A ++R++  PDYKA R  +P+ L+ ++P ++   +  GI      G EADD+ 
Sbjct: 48  VFDEDDRADSWRHQCLPDYKAGRSPMPDNLVAEMPSLKAGFEGLGIACWHSAGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VTI+STDK   QL++P   + D  ++  +D+  V + +G+ P+++  
Sbjct: 108 ATLAAKVSSGGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVQETFGVLPQQLTD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+PGIG KTA  LL + G+L+ +  N   + +K  R+ + E+ E A 
Sbjct: 168 YWGLAGISSSKIPGVPGIGPKTAVTLLTQTGSLDELYDNLEGVPEKW-RKKLEEHRELAY 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
             +++  L+TDV +   L+ L L 
Sbjct: 227 ACKRVSTLQTDVALDGNLQQLRLP 250


>gi|323491411|ref|ZP_08096595.1| flap endonuclease-like protein [Vibrio brasiliensis LMG 20546]
 gi|323314280|gb|EGA67360.1| flap endonuclease-like protein [Vibrio brasiliensis LMG 20546]
          Length = 260

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 13/268 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + +Q    ES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTIATTSRTIQRILNESQPTHIIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK NR  +PE L+  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQERGWRAEVLPQYKENRKPMPEPLMNGLEAIQDAWWKLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   +  ++G+ P ++    
Sbjct: 115 LAMKVASHNEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEMEFGVKPHQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   +PGIPG+G K A  +L ++ N+E    +   +   K R+ + E+ E+AR  
Sbjct: 175 GLAGISSSQVPGIPGVGPKAAKEILTQFDNIEQAYAS-DELPA-KYRKKLDEHIESARKC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+TD+ +   L+ +     N   
Sbjct: 233 KQIAALKTDMELGFNLQDIRFTGPNKEE 260


>gi|307105571|gb|EFN53820.1| hypothetical protein CHLNCDRAFT_136540 [Chlorella variabilis]
          Length = 293

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 22/288 (7%)

Query: 27  SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPK 86
                G     + GF N L  LL         +HFAV+ D    TFR+E+Y  YK  R  
Sbjct: 6   MSMPPGEDTTVLFGFLNTLLNLLGLVPP---PTHFAVVLDARGKTFRHEMYEGYKGQRQA 62

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
            P+ +   +P +    +A  IP I++ G EADD+I T  Y A +EG AV + S DKD  Q
Sbjct: 63  CPDAVKEAIPRLLQLLKAMAIPVIQVSGVEADDVIGTMAYRAVREGIAVAVASPDKDFFQ 122

Query: 147 LVSPTTCLYDTVKEEKIDIE------------HVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           L+ P   L    K+  +                   ++G+ PE+ V + AL GD+ DN+P
Sbjct: 123 LLRPGIILLRPPKKPALGERINKYALVPYSQTDFENEYGLQPEQFVDVLALAGDASDNVP 182

Query: 195 GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI--LEYAETARLSRKLVMLRTD 252
           G+ GIG KTA  LL+++G LEN++ +A+ +K KK    +   E    ARLS++LV + T 
Sbjct: 183 GVAGIGPKTAVALLKQHGTLENLIEHAAEVKPKKAALQLSSAEGRAAARLSQQLVRIETA 242

Query: 253 VPIT---IPLEHLILEDCN--GPRLISFLKALEFTKLINRVATTYDCD 295
           + +     PL+ L L+     G  L+   + LEF++  +RV   +  +
Sbjct: 243 LDMPPVREPLDQLRLQLPEDRGVDLLHQFQELEFSRHSSRVKELWASE 290


>gi|333000965|gb|EGK20535.1| exonuclease xni [Shigella flexneri K-272]
 gi|333015531|gb|EGK34870.1| exonuclease xni [Shigella flexneri K-227]
          Length = 247

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 125/262 (47%), Gaps = 21/262 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAVI 64
           + +VD  + I R                  A+ G          L      S  +H   +
Sbjct: 1   MLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVAV 44

Query: 65  FDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           FD    +  +R++  PDYKA+RP +PE L  ++P +R A +  G+P       EADD+ A
Sbjct: 45  FDDENRSSGWRHQRLPDYKADRPPMPEELHDEMPALRAAFEQRGVPCWSASDNEADDLAA 104

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++   
Sbjct: 105 TLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDY 164

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L G     +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A L
Sbjct: 165 WGLAGICSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAFL 223

Query: 243 SRKLVMLRTDVPITIPLEHLIL 264
            R +  L+TD+ I   L+ L L
Sbjct: 224 CRDIARLQTDLHIDGNLQQLRL 245


>gi|148906869|gb|ABR16580.1| unknown [Picea sitchensis]
          Length = 400

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 141/298 (47%), Gaps = 42/298 (14%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-------PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
              L L+DG++ +YRA+Y          L     +G  V +I    + +  +L     E 
Sbjct: 111 NGRLMLIDGTAAMYRAYYQLMASLHYGNLEHADGNGDWVLSIFKALSTMLDML-----EL 165

Query: 57  IASHFAVIFDYPA-------------------VTFRNEIYPDYKANRPKIPEMLLPQLPL 97
             SH AV+FD+                      TFR+ +YP YK+NR   P+ ++  L  
Sbjct: 166 CPSHIAVVFDHRGFEFGYNPPNLCQEFCGSTGPTFRHTLYPAYKSNRMPTPDTIVQALQY 225

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YD 156
           ++ A QA  +      G EADD+I T        G  V ++S DKD  Q++ P+  L   
Sbjct: 226 LKAALQAMSVKV---PGVEADDVIGTLAVNGVAAGLKVRVVSPDKDFFQILCPSLRLLRI 282

Query: 157 TVKEEKI---DIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
           + +  +I    +E   +K+G + P ++V + AL GD+ D IPG+ GIG   A  L+ ++G
Sbjct: 283 SSRGSRIASFGVEQFAEKYGDLKPSQIVDVMALAGDNADFIPGVHGIGDMNALKLIIKFG 342

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP---ITIPLEHLILEDC 267
           +LEN+L N  R+     R+ +L     A LS++L  LR ++P   +   +  L+ +  
Sbjct: 343 SLENLLANLDRVPDGAIRKALLFDDGQALLSKELATLRCNLPYCMVPFHMSDLLFQKP 400


>gi|260901980|ref|ZP_05910375.1| 5'-3' exonuclease [Vibrio parahaemolyticus AQ4037]
 gi|308108415|gb|EFO45955.1| 5'-3' exonuclease [Vibrio parahaemolyticus AQ4037]
          Length = 260

 Score =  221 bits (564), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 132/268 (49%), Gaps = 13/268 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEAKPTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E    +   +   K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFEDIEAAYAS-DEL-APKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+ D+ +   L+ +     N   
Sbjct: 233 KRVAALKCDIDLGFNLQDIRFTGPNKAE 260


>gi|317049318|ref|YP_004116966.1| 5'-3' exonuclease [Pantoea sp. At-9b]
 gi|316950935|gb|ADU70410.1| 5'-3' exonuclease, SAM-fold domain protein [Pantoea sp. At-9b]
          Length = 251

 Score =  221 bits (564), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 29/269 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG------FCNMLWKLLQNSRKESIAS 59
           HL +VD  + I R                  A+ G          L +LL ++R     +
Sbjct: 4   HLLIVDALNLIRRLH----------------AVQGSPCRDACVAALHQLLGHTR----PT 43

Query: 60  HFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           H   +FD       +R+ + PDYKA RP +P+ L  ++P ++ A QA G+        EA
Sbjct: 44  HVVAVFDSATRQPGWRHALLPDYKAGRPPMPDDLQQEMPAIQQAFQAAGVSCWIADQDEA 103

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+ AT        G   TI+STDK   QL++P   + D  ++  +D+  + +++G+ P 
Sbjct: 104 DDLAATLAIKMADAGHQATIVSTDKGYCQLLAPQIRIRDYFQKRWLDVPFIEQEFGVTPA 163

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     L G S   IPG+ GIG K+A  L+ ++G+LE I     ++  K +   +    
Sbjct: 164 QLADYWGLCGISSSKIPGVAGIGPKSARELIGQFGSLEAIYQQWDQVPAKWQG-KLQSQR 222

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILED 266
             A + R++  L+ D+ +   L  L    
Sbjct: 223 AMAEICRQVSTLKRDLVLQGNLNTLRYNP 251


>gi|269101927|ref|ZP_06154624.1| putative exodeoxyribonuclease IX [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161825|gb|EEZ40321.1| putative exodeoxyribonuclease IX [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 258

 Score =  221 bits (564), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 132/263 (50%), Gaps = 17/263 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPV--NAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R   A         G P   N     C  L K++  S+     +H   
Sbjct: 4   HLVVIDALNLIRRVHAA-------QHGEPNVENTAQVCCQALTKIIAMSQ----PTHIVA 52

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD+      +R E+ P YK  R  +PE L   +  ++ A  A GI ++   G EADD++
Sbjct: 53  VFDHNGEDRGWRAELLPKYKEGRKPMPEELAQGMDKIQDAFMAMGIDSLLSSGDEADDLV 112

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT           VTIISTDK   QL+ PT  + D  +E  +D   + +++G+ PE++  
Sbjct: 113 ATLAIKVASHNEQVTIISTDKGYCQLLQPTLRIRDYFQERWLDSPFIEQEYGVKPEQLPD 172

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGIPGIG K A  LL +YG+LE++L +A  + +K  ++ IL   + AR
Sbjct: 173 YWGLAGISSSKIPGIPGIGPKAAVELLSQYGDLESVL-SADDLAEKW-QKKILGNEDLAR 230

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
             +++  L+TD+ +   L+ +  
Sbjct: 231 ACKQVASLKTDLELGFNLQDIRY 253


>gi|310766616|gb|ADP11566.1| Exodeoxyribonuclease IX [Erwinia sp. Ejp617]
          Length = 249

 Score =  221 bits (564), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 77/267 (28%), Positives = 137/267 (51%), Gaps = 29/267 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG------FCNMLWKLLQNSRKESIAS 59
           HL ++D  + I R                  A+ G        N + +LL ++R     +
Sbjct: 3   HLLIIDALNLIRRIH----------------AVQGSPCQEACLNAVQQLLLHTR----PT 42

Query: 60  HFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           H   +FD    +  +R+++ PDYKA R  +P+ L  ++PL+R A  + G+ +   +G EA
Sbjct: 43  HAVAVFDDDRRSSSWRHQLLPDYKAGRSPMPDALRDEMPLLRGAFASIGVKSWHSKGDEA 102

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+ AT        G   TI+STDK   QL++PT  + D  ++  +D+  +   +G+ P 
Sbjct: 103 DDLAATLASKVAAVGHQATIVSTDKGYCQLLAPTIQIRDYFQKRWLDMPFITDSFGVEPT 162

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     L G S   IPG+ GIG K+AA LL+++G++  I  N  ++ +K  R+ + E+ 
Sbjct: 163 QLTDYWGLAGISSSKIPGVAGIGGKSAAQLLRQFGSMAAIYQNLEQVPEKW-RKKLAEHQ 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLIL 264
           + A + +++  L+TD+ +   L+ L L
Sbjct: 222 QMATICKQVATLKTDLLLEGNLKELRL 248


>gi|217031813|ref|ZP_03437316.1| hypothetical protein HPB128_199g21 [Helicobacter pylori B128]
 gi|216946465|gb|EEC25067.1| hypothetical protein HPB128_199g21 [Helicobacter pylori B128]
          Length = 400

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 138/335 (41%), Gaps = 15/335 (4%)

Query: 3   KENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +       
Sbjct: 7   KEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPF--- 63

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEADD+
Sbjct: 64  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEADDV 123

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IA+   ++    +   I S DKD  QL+S    L+D   + +   +  ++K+GI P +  
Sbjct: 124 IASLATLSP---YKTRIYSKDKDFNQLLSDKIALFD--GKTEFLAKDCVEKYGILPSQFT 178

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEYA 237
             Q + GDS DN  G+ GIG K A  LLQ  G+LE I  N      +   K  + +++  
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNG-PRLISFLKALEFTKLINRVATTYDCDA 296
            +A LS++L  L                  N   ++   LK   F   +  +        
Sbjct: 239 GSAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLENFSTPLI 298

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQF 331
            +  P  LD   T +        I  +     S F
Sbjct: 299 LDNAP-ALDSAPTSDNAPRKSRMIVLENAAPLSAF 332


>gi|227114674|ref|ZP_03828330.1| exonuclease IX [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 260

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 84/268 (31%), Positives = 140/268 (52%), Gaps = 17/268 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   I    + L +L+QNS+     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CITACQHALHQLIQNSQ----PTHAVAVF 49

Query: 66  DYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D      ++R+++ PDYKA R  +P+ L  +LP ++ A  A G+ +    G EADD+ AT
Sbjct: 50  DDEDRDTSWRHQLLPDYKAGRTPMPDNLKQELPQIKAAFAAVGVASWHSSGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G   TI+STDK   QL++P   + D  ++  +D+  + +++G+ P+++    
Sbjct: 110 LAAKLSSAGHQATIVSTDKGYCQLLAPYIQIRDYFQKRWLDLPFIEQEFGVSPQQLTDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG K+A  LLQ+ G+LE +      + +K  R+ + ++ E A +S
Sbjct: 170 GLAGISSSKIPGVAGIGPKSATQLLQQAGSLEALYQQLDTVPEKW-RKKLEQHKEMALIS 228

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           R++  LRTD+ +   L+ L L   N  +
Sbjct: 229 RQVATLRTDLTLNGNLQQLRLPVQNSAQ 256


>gi|28897471|ref|NP_797076.1| exonuclease IX [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839025|ref|ZP_01991692.1| exodeoxyribonuclease IX [Vibrio parahaemolyticus AQ3810]
 gi|260365319|ref|ZP_05777872.1| 5'-3' exonuclease [Vibrio parahaemolyticus K5030]
 gi|260896294|ref|ZP_05904790.1| 5'-3' exonuclease [Vibrio parahaemolyticus Peru-466]
 gi|81728352|sp|Q87RT0|XNI_VIBPA RecName: Full=Protein Xni
 gi|28805683|dbj|BAC58960.1| exodeoxyribonuclease IX [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747495|gb|EDM58439.1| exodeoxyribonuclease IX [Vibrio parahaemolyticus AQ3810]
 gi|308086148|gb|EFO35843.1| 5'-3' exonuclease [Vibrio parahaemolyticus Peru-466]
 gi|308113496|gb|EFO51036.1| 5'-3' exonuclease [Vibrio parahaemolyticus K5030]
          Length = 260

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 132/268 (49%), Gaps = 13/268 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEAKPTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E    +   +   K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFEDIEAAYAS-DEL-APKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+ D+ +   L+ +     N   
Sbjct: 233 KRVAALKCDIELGFNLQDIRFTGPNKAE 260


>gi|326567456|gb|EGE17571.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 835

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 117/677 (17%), Positives = 258/677 (38%), Gaps = 114/677 (16%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
              +I   + +L+   + +  I T  ++   S+  +IA +    K       + +     
Sbjct: 164 TNDEIDDVLIRLKQYPALACDIETTGLE-LGSELYSIAFAWSQHKGCAFKVTDKV----- 217

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD--KLVLHR------------ 478
                               LK+FFE+   + I HN  +D   ++ H             
Sbjct: 218 -------------------QLKRFFESYSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMI 258

Query: 479 YGIS--MRGFEDIMLMSYVL--DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           +G+    R  ED  +++Y+   ++  +   +  ++ +++     ++    K  +      
Sbjct: 259 HGLHTMCRNIEDTKIIAYLATNNTQGNILGLKELSHEFVGNYAIDV----KHVLNH---P 311

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + V E+ ++++     ++   +PK++ +    +Y+ +  P I  + Q+E+ G+ ++ D 
Sbjct: 312 LATVLEYNLKDTLATYWVFNKYKPKMLSDNQDSIYKTIMLPSIKTIIQIELHGMPMNMDK 371

Query: 595 LKQVSAEISKNLLSLEENIY--------------------------------DLSGEKFN 622
           +  V  ++        E IY                                 +   +F 
Sbjct: 372 VVIVKKQLQNQANDALEQIYASEHVKAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFK 431

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCGDNPIIKNI---LEWRQL 677
            +S   L  +L+  L  P    T   Q    A  +E++  +  D+ II  +   LE+ ++
Sbjct: 432 PNSTAHLAILLYDYLGLPILDYTPNKQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKV 491

Query: 678 SKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            KI ST+  +            +H  ++L  T++ RL+S  PNLQ +P  +  G+ I++ 
Sbjct: 492 QKILSTFIPAFEKAQQKDDWHYLHGSFNLGGTLSNRLSSSNPNLQQLPSGSTYGKTIKQC 551

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--- 793
           F +P     + AD++ +E RI   + K     +++ +  D H   A   F   +  +   
Sbjct: 552 FQAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFANQMPDIINT 611

Query: 794 ----------SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                      P++R+ +K  +F++ YG   F L        S+A +    Y   +    
Sbjct: 612 KESINSIKHKYPELRQESKAPSFALQYGGQYFTLMKNCGFSESKAKEIETNYHKMYEVSD 671

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEI------NSPKSSIRNINERAAINAPIQGSAA 897
            + ++      + GY++  FG RI    +       S    + +   R+  NA    S  
Sbjct: 672 AWTQRKLEQCAKQGYIDVAFGLRIRTPVVGKTVLNTSKTPYLASAEARSVGNAISGQSYC 731

Query: 898 DITRRAMISVHKSL--EDHKLATKMLLQIHDELVFEVPEEEITTAS---QIIVHSMEKAC 952
            +T RA+    + +   +++     +  IHD +   V + ++         +++ M+   
Sbjct: 732 QLTNRAINEFMERVWASEYQYDIMPVCLIHDAIYL-VIKNDVEIVKWVNDNLINCMQWQE 790

Query: 953 LPKINLR-VPLKVNIKV 968
           LP+I    + L+  + +
Sbjct: 791 LPEIRHDQIKLEAELGI 807


>gi|119952216|ref|YP_950517.1| DNAP [Enterobacteria phage N4]
 gi|117650935|gb|ABK54408.1| DNAP [Enterobacteria phage N4]
          Length = 859

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 125/643 (19%), Positives = 248/643 (38%), Gaps = 91/643 (14%)

Query: 372 VNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +  + I +W+ KL  +    +  I T ++  +      I       +          +  
Sbjct: 164 LTPEAISKWLDKLLEMNVPLAVDIETFSLKHYDCGIGTITFCWNKHEG---IAFPVDYEP 220

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL---------------- 474
           +   T     G+      + S L+ FF      ++ HNI +D                  
Sbjct: 221 IEGATEAPY-GRQVHNMLVRSMLRDFFIKYLNRQMYHNIAFDVYALIYQLFMTDLLDTEG 279

Query: 475 VLHRYGISMRGFEDIMLMSYVL-DSGRSSH-DIASIAQKW-LSYTRKEILKSRKSSIPID 531
           +LH   I +R ++   L++Y+  +S   +   +   AQ++  +Y ++EI         I 
Sbjct: 280 LLHGMSIMLRNWDCTKLITYLATNSCAGNKLSLKDQAQEYAGNYAQEEIN-------DIT 332

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI- 590
           +I  +++ E+ + +      ++      L+ ++ L VY  + KP  + + QM++TG+ I 
Sbjct: 333 RIPLAELLEYNLVDGLCTWYVYEKHWDTLVNDQQLDVYTNIFKPACEDIIQMQLTGMPIN 392

Query: 591 -----------------------DQDLLKQVSAEISKNLLSLEENIYDL-------SGEK 620
                                  D  ++K  +  +++  +  +  I          + E+
Sbjct: 393 MKTVLGVEEALTQDYNNALKTIADSKVIKDFTRLLNEEWVEKQNQILKKKRVTLADAKEQ 452

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN-----PIIKNILEWR 675
           FN +S  QL  +LF  L+ P    T +    T +  L+ +           I+  +++++
Sbjct: 453 FNPNSGVQLQKLLFEFLELPVLGLTASKLPATGSGILKSLKNHTQDTSILEILDALIDYK 512

Query: 676 QLSKIKSTYADSLPNHIN--KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
            + KI + +  +L N          +    +L  T++GRL+S EPNLQN+P  +   + I
Sbjct: 513 AVDKILTAFIPALKNARQGPDGWHYLFGNLNLGGTVSGRLSSSEPNLQNLPSGSRYAKII 572

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI--- 790
           ++ F +PP       D++ +E RI A   K     +V+ +  D H + A   FG  +   
Sbjct: 573 KKCFEAPPGWIFCGLDFASLEDRISALTTKDPNKLKVYTDGYDGHSLRAYAYFGEMMPDI 632

Query: 791 ----EKVSPQM------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
               E V+         R+ +K   F++ Y  +   L      P  +A    +RY   + 
Sbjct: 633 EDTVESVNSIQEKYKAYRQDSKAPTFALTYQGTYITLMKNCGFPEQKARMVEERYHTLYK 692

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI------NSPKSSIRNINERAAINAPIQG 894
              ++++   +   ++GYV   FG R+    +       S          R A NA  Q 
Sbjct: 693 VSDDWVQAKLDQAAKDGYVTVAFGLRVRTPLLQQVIRGTSKTPYEAEAEGRTAGNALGQ- 751

Query: 895 SAADITRRAMISVHKSLE--DHKLATKMLLQIHDELVFEVPEE 935
           S   +  RA     + +    H+L  +    IHD   F + ++
Sbjct: 752 SWCLLNNRAGSEFMRKVRNSKHRLDIRPSTHIHDAQYFLIRDD 794


>gi|254506827|ref|ZP_05118966.1| exonuclease IX [Vibrio parahaemolyticus 16]
 gi|219550112|gb|EED27098.1| exonuclease IX [Vibrio parahaemolyticus 16]
          Length = 259

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 131/267 (49%), Gaps = 13/267 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N IA       + L    KES  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDP---------NDIARTITTTTRTLNKIIKESQPSHMIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P+YK NR  +PE LL  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQERGWRAEILPEYKQNRKPMPEPLLNGLESIQDAWWQLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+SPT  + D  +   +D   + K++G+ P+++    
Sbjct: 115 LAMKVANHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDAPFIEKEFGVTPKQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E    +   +   K R+ + E+ ++AR  
Sbjct: 175 GLTGVSSSQVPGVPGIGPKAAKEILTQFDDIEAAYAS-DEL-PSKYRKKLDEHIDSARRC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGP 270
           +++  L+TD+ +   L+ +        
Sbjct: 233 KQIAALKTDIELGFNLQAIRYTGPQTA 259


>gi|117921327|ref|YP_870519.1| exonuclease IX [Shewanella sp. ANA-3]
 gi|156630386|sp|A0KZ94|XNI_SHESA RecName: Full=Protein Xni
 gi|117613659|gb|ABK49113.1| 5'-3' exonuclease [Shewanella sp. ANA-3]
          Length = 260

 Score =  221 bits (562), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 129/263 (49%), Gaps = 11/263 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N   ++DG + + R + A P  +          ++  C  L ++          +H  ++
Sbjct: 2   NKFLIIDGLNLVRRIYAAIPDENDMDS--LTERVSVACTKLLRI-------HHPTHVTIV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D   +++R ++YPDYK  R  +PE L   LP ++   ++  I +I     EADD+IAT 
Sbjct: 53  WDGDEMSWRKQLYPDYKKGRKPMPEPLAAGLPALQEHLKSVQIQSI-YAAAEADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                K      I+STDK   QL  P    +D   ++ ++I  + +K G+   + + L A
Sbjct: 112 AMKTAKAQGEAVIVSTDKGFSQLNHPRISQWDHFNQQYLNITELEQKLGVDRSQFLDLLA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL+ +  L  +  +   +   K+ + + E  + ARLS 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAAELLRTFRTLAALFSSLPNL-GAKQAKKLAEGRDMARLSY 230

Query: 245 KLVMLRTDVPITIPLEHLILEDC 267
           KL  L+ D+P+ I L+   +   
Sbjct: 231 KLAQLQIDLPLNINLKDFRVNGP 253


>gi|320157185|ref|YP_004189564.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319932497|gb|ADV87361.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 259

 Score =  221 bits (562), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 129/261 (49%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P  +        N I   C  L +++  S      +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQPDPTDIA-----NTIQNTCRTLQRIISESH----PTHIVAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P+YK  R  +PE LL  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHLGSDRGWRAEILPEYKQGRKPMPEPLLNGLEKIQEAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P+++    
Sbjct: 115 LACKVAQHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDQPFIEQEFGVKPQQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   + GIPGIG K A  +L ++ ++E   ++      KK R    ++ E AR  
Sbjct: 175 GLTGISSSQVTGIPGIGPKAAKEILSQFDDIEQAFLSPD--LPKKYRTKFDQHIELARRC 232

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ L  
Sbjct: 233 KRVSALKTDIELGFNLQDLRF 253


>gi|259909477|ref|YP_002649833.1| Exodeoxyribonuclease IX [Erwinia pyrifoliae Ep1/96]
 gi|224965099|emb|CAX56631.1| Exodeoxyribonuclease IX [Erwinia pyrifoliae Ep1/96]
 gi|283479550|emb|CAY75466.1| 5'-3' exonuclease [Erwinia pyrifoliae DSM 12163]
          Length = 249

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 77/267 (28%), Positives = 137/267 (51%), Gaps = 29/267 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG------FCNMLWKLLQNSRKESIAS 59
           HL ++D  + I R                  A+ G        N + +LL ++R     +
Sbjct: 3   HLLIIDALNLIRRIH----------------AVQGSPCQEACLNAMQQLLLHTR----PT 42

Query: 60  HFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           H   +FD    +  +R+++ PDYKA R  +P+ L  ++PL+R A  + G+ +   +G EA
Sbjct: 43  HAVAVFDDDRRSSSWRHQLLPDYKAGRSPMPDALRDEMPLLRCAFASIGVKSWHSKGDEA 102

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+ AT        G   TI+STDK   QL++PT  + D  ++  +D+  +   +G+ P 
Sbjct: 103 DDLAATLASKVAAVGHQATIVSTDKGYCQLLAPTIQIRDYFQKRWLDMPFITDSFGVEPT 162

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     L G S   IPG+ GIG K+AA LL+++G++  I  N  ++ +K  R+ + E+ 
Sbjct: 163 QLTDYWGLAGISSSKIPGVAGIGGKSAAQLLRQFGSMAAIYQNLEQVPEKW-RKKLAEHQ 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLIL 264
           + A + +++  L+TD+ +   L+ L L
Sbjct: 222 QMATICKQVATLKTDLLLEGNLKELRL 248


>gi|316995410|gb|ADU79191.1| DNA polymerase [Enterobacter phage EcP1]
          Length = 865

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 124/686 (18%), Positives = 261/686 (38%), Gaps = 100/686 (14%)

Query: 328 TSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387
            + F + S Q     S +T   +F    ++L +  I    Y      K+I  W+QKL T 
Sbjct: 130 GALFYNPSIQDKLDLSIKTLADMFTGSYEELGKDIIKFAEYP--DTVKEISDWLQKLHTY 187

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            + S  I   ++  + ++   I+ +  +Q +  +F V+           +D+     L  
Sbjct: 188 PALSADIEAWSLKFYEARLGTISFAW-NQHEGIAFAVD------FERNYEDALAIRLL-- 238

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLV----------------LHRYGISMRGFEDIML 491
                LK FF       + HN  YD  V                L    +  + + D  +
Sbjct: 239 -----LKGFFTEYKGKMLWHNGSYDLTVIIYELWMNGLLDQKGLLTGLDVMTKNWHDTKI 293

Query: 492 MSYVL-DSGRSSH-DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           ++Y+  +S   +H  + + + ++      + +K       I  I    +  + + +S   
Sbjct: 294 ITYLATNSCAGNHLGLKAQSHEYAGNYALDDIK------DISLIPKKDLVRYNLIDSLCT 347

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
             ++      +  +    +Y+ L  P +  + QM++TGI +D + + +V   + K  ++ 
Sbjct: 348 WYVYGKHWQTMNDDNQRELYDDLFMPSLKNIIQMQLTGIPLDMEEVLKVEKILIKEKVTF 407

Query: 610 EENIYDLS-------------------------------GEKFNLSSPKQLGDILFTKLK 638
            + +   S                                ++FN  SP QL ++L+  + 
Sbjct: 408 YQEMLKFSVITDLVHSVRKRKCEKKNASLKTKQVTVEDFDDQFNPDSPLQLQELLYDIMG 467

Query: 639 FPSGAKTKTGQWKTTAQDLEQIN----CGDN-PIIKNILEWRQLSKIKSTYADSLPNH-- 691
            P    T T    T A+ +E++       ++  ++  ++++ +++KI +++  +      
Sbjct: 468 LPVIDLTDTKAPATGAETMEKLKFKVKTPEHAELLDLLIKFSKVNKIITSFIPAFKAAPK 527

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI-KTDLGQKIRRAFISPPTKKLISADY 750
                  +  F++L  T++GRL+S  PNLQ IP  K+   + I++ F +P     +  D+
Sbjct: 528 AEDGWHYLFGFFNLGGTVSGRLSSSNPNLQQIPSSKSPYSKVIKKCFRAPKGFLFVGLDF 587

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-------------SPQM 797
           + +E RI A   K +   +V+ +  D H + A   F   +  +                +
Sbjct: 588 ASLEDRISAVTTKDSNKLKVYTDGYDGHCLRAYAYFKDEMPDIINTVESINSIEGKYKDI 647

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R+ +KT  F + Y  +   L  +       A     RY   +    +++        + G
Sbjct: 648 RQKSKTPTFLLTYRGTYMGLMQKCGFDEPTAKQIESRYHELYKESDDWVNARLEEATKVG 707

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA-----ADITRRAMISVHKSLE 912
           YV   FG R+    ++      ++    A       G+A       +  RA + V + LE
Sbjct: 708 YVTAAFGLRVRTPLLHQVVMGTKHTPYEAEAEGRTAGNALGQSWCLLNNRAAVDVAQRLE 767

Query: 913 ---DHKLATKMLLQIHDELVFEVPEE 935
              + ++  +    IHD   + +P+ 
Sbjct: 768 KLPELRMQIRPGAHIHDAQYYIIPDN 793


>gi|297584247|ref|YP_003700027.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Bacillus selenitireducens MLS10]
 gi|297142704|gb|ADH99461.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Bacillus selenitireducens MLS10]
          Length = 297

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 143/299 (47%), Gaps = 22/299 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP------LLSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M  +  L L+DG + + R ++AT        L R  +G   NA+  F   L++L++    
Sbjct: 1   MTTQ-RLLLIDGFNLLSRGYFATSFNKEPEELPRNGEGRFTNAVNVFMTKLFQLIREQNI 59

Query: 55  ESIASHFAVIFDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +S+     V +D      FRN+ Y  YKA R  +PE L+ Q   +        +P     
Sbjct: 60  DSVH----VSWDGKRNEGFRNQEYDFYKAQRTDLPEPLIDQYHFLTEILADLQVPQSSAP 115

Query: 114 GFEADDIIATYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIK 170
           G+EADDI+ T       +    V + S D+DL QL+          K+++   D+    +
Sbjct: 116 GYEADDIMGTLAKRWGNERHGDVILYSNDRDLFQLIDEHISQRVAKKKQEVVYDLNLFRE 175

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN--ASRIKQ-- 226
           ++ + P + V ++AL GDS DNIPG PG+G K+A  L++ Y +L  +     A  +    
Sbjct: 176 EFDLLPSQWVDVKALLGDSSDNIPGCPGVGEKSAYPLIRHYESLTGVYKALEADELDPVF 235

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPI--TIPLEHLILEDCNGPRLISFLKALEFTK 283
           K+ R+N++E  E AR+S KL  + T VP    + L+ L +   +   L   +K  E  K
Sbjct: 236 KRYRKNLIEGEELARISYKLATIETQVPDINQMDLDALNIGFSHSQAL-DLMKRNELRK 293


>gi|90415813|ref|ZP_01223746.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2207]
 gi|90332187|gb|EAS47384.1| exodeoxyribonuclease IX [marine gamma proteobacterium HTCC2207]
          Length = 301

 Score =  220 bits (561), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 130/282 (46%), Gaps = 12/282 (4%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +L+D S +I+R+++  P   +  D G   +A+ GF   L  +L+N   E    H    FD
Sbjct: 4   YLIDSSIYIFRSYFTLPENWQALDSGHSTHAVYGFTAFLLDMLRNKNPE----HLFCAFD 59

Query: 67  YP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                 FR+++  DYKANR    E L  QL   R   +  GI  +    +EADD+I    
Sbjct: 60  ESLGSGFRHQLCSDYKANRELPDEALAFQLNACRQLCRVLGIAEMASDTYEADDLIGAVA 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
             A        +++ DKDLMQL+      +D  K        V K   I  ++M    AL
Sbjct: 120 KNARLANSQPVVVTRDKDLMQLIEAEDLFWDFGKAPPKTQRQVEKDLEIGCQQMADFLAL 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAET 239
           TGDS DNI G+PG+G KTA  LL  + +++ IL +  ++         K  + I  + + 
Sbjct: 180 TGDSSDNIAGVPGVGAKTAKQLLLHFPDIDAILDHLDQLQDLPIRGASKLADKIDNHRDQ 239

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281
             L+R+L  + TD+     LE +  +  N      F + + F
Sbjct: 240 LLLARQLTTICTDIAEAPKLEQIAWQGINLNAFDLFCEEMGF 281


>gi|328472520|gb|EGF43383.1| flap endonuclease-like protein [Vibrio parahaemolyticus 10329]
          Length = 260

 Score =  220 bits (561), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 132/268 (49%), Gaps = 13/268 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEAKPTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIDKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E    +   +   K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFEDIEAAYAS-DEL-APKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+ D+ +   L+ +     N   
Sbjct: 233 KRVAALKCDIELGFNLQDIRFTGPNKAE 260


>gi|169629277|ref|YP_001702926.1| 5'-3' exonuclease [Mycobacterium abscessus ATCC 19977]
 gi|169241244|emb|CAM62272.1| Probable 5'-3' exonuclease [Mycobacterium abscessus]
          Length = 337

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 138/326 (42%), Gaps = 43/326 (13%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            + L+DG+S  +R+++  P      DG PVNA+ GF + + +L+   R   +A    + +
Sbjct: 13  PVLLLDGASLWFRSYFGVPDSITSPDGRPVNAVRGFLDTVSQLITLYRPHRLAVCLDLDW 72

Query: 66  DYPAVTFRNEIYPDYKANR----------------------PKIPEMLLPQLPLVRLATQ 103
                 +R    P YKA+R                       ++P+ L PQ+ ++     
Sbjct: 73  ---RPAWRVAAIPSYKAHRVVTDDPLAGRPSDTVGAQTVDIEEVPDELTPQVDMIADILD 129

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YD 156
           AFGI +    GFEADD++ T    A +    V ++S D+DL+Q+V+              
Sbjct: 130 AFGIASAGAAGFEADDVLGTLA--ANERRDPVIVVSGDRDLLQVVADVPVPVRVFYMGRG 187

Query: 157 TVKEEKIDIEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
             K        V +++G+P  +       L  L GD  D +PG+PG+G KTAA LL E+G
Sbjct: 188 FAKATLFGPTEVAEQYGVPLARAGAAYAELALLRGDPSDGLPGVPGVGEKTAAKLLAEFG 247

Query: 213 NLENILINASRIK---QKKRRENILEYAETARLSRKLVMLRTDVP--ITIPLEHLILEDC 267
           +L+ IL  A   K    K  R  +         +  +V +  D P  +    + L L   
Sbjct: 248 SLDGILTAADDPKSGLAKAVRAKLQAATVYMAAAEPVVRVAVDAPVIVDRDSDALPLTAR 307

Query: 268 NGPRLISFLKALEFTKLINRVATTYD 293
           +  R+      L     + R+    D
Sbjct: 308 DPRRVAELGAELGIGSAVTRLQKALD 333


>gi|206895769|ref|YP_002247070.1| DNA polymerase I [Coprothermobacter proteolyticus DSM 5265]
 gi|206738386|gb|ACI17464.1| DNA polymerase I [Coprothermobacter proteolyticus DSM 5265]
          Length = 370

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 144/294 (48%), Gaps = 30/294 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + LVD +S +YR++YA P LS K DG P   I GF  ++ KLL  +      SHF ++
Sbjct: 2   KKVILVDSNSLLYRSYYALPNLSTK-DGFPTGGIYGFLRIVSKLLTEAH-----SHFIIV 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            D   V  R+ ++ +YK NRPK P+ L  Q   +     A  +P I  +G EADD I+  
Sbjct: 56  GDAKGVLARSLVFKEYKTNRPKAPDELSLQREKLPDILGALSLPYIVYEGKEADDTISAL 115

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180
           T+  E+ GF V I ++D D+MQL+S  T +    K     ++ D    ++++G  PE+ V
Sbjct: 116 THFFERWGFQVEIYTSDTDMMQLISQNTTVVTFKKGITQVKRYDYSTFVEEFGFTPERFV 175

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             ++L GDS DNIPG+ GIG KTA+ L++++ + E +L         K    +       
Sbjct: 176 DYKSLVGDSADNIPGVNGIGPKTASSLIKDF-SREELL--------SKFGTVLERNL--- 223

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
               +L+    D PI   +  L ++       +  L+  EF  LI         
Sbjct: 224 ----QLIT-LEDFPIPYSVLLLRVKP---SAELKVLEEFEFNSLITPFLKVLGT 269


>gi|329296361|ref|ZP_08253697.1| 5'-3' exonuclease [Plautia stali symbiont]
          Length = 255

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 131/270 (48%), Gaps = 29/270 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG------FCNMLWKLLQNSRKESIAS 59
           HL ++D  + I R                  A+ G          L +LL ++R     +
Sbjct: 4   HLLIIDALNLIRRLH----------------AVQGSPCREACVAALHQLLGHTR----PT 43

Query: 60  HFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           H   +FD       +R+++ PDYKA RP +P+ L  ++  ++ A +A G+     +  EA
Sbjct: 44  HVVAVFDSHDRQPGWRHQLLPDYKAGRPPMPDDLQQEMASLQAAFEASGVSCWIAEHDEA 103

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+ AT        G   TI+STDK   QL++P+  + D  ++  +D+  + +++G+ P 
Sbjct: 104 DDLAATLAVKMADAGHQATIVSTDKGYCQLLAPSIRIRDYFQKRWLDVPFIEQEFGVAPA 163

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     L G S   IPG+ GIG K+A  LLQ++G+LE +     ++ +K  ++ + ++ 
Sbjct: 164 QLADYWGLCGISSSKIPGVLGIGPKSARELLQQFGSLEALYQQLDQVPEKW-QKKLRDHR 222

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDC 267
             A + R++  L+ D+ +   L  L  +  
Sbjct: 223 AIAEVCRQVSTLKRDLVLQGNLNTLRSQGP 252


>gi|330830776|ref|YP_004393728.1| hypothetical protein B565_3076 [Aeromonas veronii B565]
 gi|328805912|gb|AEB51111.1| hypothetical protein B565_3076 [Aeromonas veronii B565]
          Length = 266

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 87/265 (32%), Positives = 129/265 (48%), Gaps = 8/265 (3%)

Query: 4   ENHLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
             HL ++D  + I R  A  A   L+     +   A     N   KLL NS      +H 
Sbjct: 5   RPHLLIIDALNLIRRLHAVQAQQALTPAQALVATRA--NLINTCRKLLANSE----PTHV 58

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
             +FD    ++R E+YP YK  R  +P  L   L  ++ A    G+ A+  +  EADD+I
Sbjct: 59  IAVFDGEVHSWRKEVYPAYKEGRTPMPLELREGLATLQDAFWECGVDALLSETDEADDLI 118

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G   TIISTDK   QL+ P   + D   +  +D   V +++G+ P ++V 
Sbjct: 119 ATLASGIASHGHQATIISTDKGFCQLICPQIRVRDYFNKRWLDAAFVQQQYGVAPAQLVD 178

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             ALTG S  NI G+PGIG KTA  LLQ+YGNL  +L    +    K    + ++ + A 
Sbjct: 179 FWALTGISGSNIKGVPGIGPKTATQLLQQYGNLAAMLEACQQEDAAKPLLKLRQHKDEAL 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILED 266
           L+++LV L+ D+P+   L  +    
Sbjct: 239 LAQRLVHLQRDIPLGFNLRDIRYPP 263


>gi|269965062|ref|ZP_06179227.1| exodeoxyribonuclease IX [Vibrio alginolyticus 40B]
 gi|269830365|gb|EEZ84590.1| exodeoxyribonuclease IX [Vibrio alginolyticus 40B]
          Length = 260

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 131/268 (48%), Gaps = 13/268 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEANPTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +P  LL  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPLPLLQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPNQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E    +   +   K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFESIEAAYASEDLV--PKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+ D+ +   L+ +     N   
Sbjct: 233 KRVAALKCDIELGFNLQDIRFVGPNKAE 260


>gi|260767258|ref|ZP_05876199.1| probable exodeoxyribonuclease IX [Vibrio furnissii CIP 102972]
 gi|260617766|gb|EEX42944.1| probable exodeoxyribonuclease IX [Vibrio furnissii CIP 102972]
 gi|315180889|gb|ADT87803.1| exonuclease IX [Vibrio furnissii NCTC 11218]
          Length = 258

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 129/263 (49%), Gaps = 13/263 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P  +          IA   +   + LQ    E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDETD---------IARTIDTTSRTLQRIIGEADPTHIIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKA R  +P+ L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLQDRGWRAEVLPGYKAGRKPMPQPLQQGLDQIQQAWWELGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   +  ++G+ P ++    
Sbjct: 115 LATKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDAPFIENEFGVKPTQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L +Y ++++   +       K R+ + E+ E AR+ 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQYPDIDSAYASDD--LPAKYRKKLDEHIELARVC 232

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           +++  L+TD+ +   L+ +    
Sbjct: 233 KQVAGLKTDIELGFNLQDIRFSG 255


>gi|261252287|ref|ZP_05944860.1| probable exodeoxyribonuclease IX [Vibrio orientalis CIP 102891]
 gi|260935678|gb|EEX91667.1| probable exodeoxyribonuclease IX [Vibrio orientalis CIP 102891]
          Length = 258

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 129/266 (48%), Gaps = 13/266 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N IA       + L     ES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDP---------NDIARTITTTSRTLNRILSESQPTHIIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI+P+YK NR  +PE L+  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQERGWRAEIWPEYKQNRKPMPEPLMNGLEAIQDAWWKLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   + K++G+ P+++    
Sbjct: 115 LAMKVASHNEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIDKEFGVKPKQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PG+G K A  +L ++ ++E    +       K R+ + E+ E+AR  
Sbjct: 175 GLTGISSSQVPGVPGVGPKAAKEILTQFTDIEQAFAS--EELPAKYRKKLDEHIESARKC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNG 269
           + +  L+TD+ +   L+ L     N 
Sbjct: 233 KLIAALKTDIELGFNLQDLRFNGPNE 258


>gi|145300082|ref|YP_001142923.1| exodeoxyribonuclease IX [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|156630377|sp|A4SQK3|XNI_AERS4 RecName: Full=Protein Xni
 gi|142852854|gb|ABO91175.1| exodeoxyribonuclease IX [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 265

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 8/269 (2%)

Query: 5   NHLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            HL ++D  + I R  A  A   L+     +   A     N   KLL  S      +H  
Sbjct: 2   PHLLIIDALNLIRRLHAVQAQQALTPAQALIATRA--NLINTCRKLLTGSE----PTHVI 55

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    ++R E+YP YK  R  +P  L   L  ++ A    G+ A+  Q  EADD+IA
Sbjct: 56  AVFDGEIHSWRKEVYPAYKEGRTPMPVELREGLNTLQDAFWECGVDALLSQTDEADDLIA 115

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T      + G   TIISTDK   QL+ P   + D   +  +D   V +++G+ P ++V  
Sbjct: 116 TLASGIAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAFVEQQYGVVPAQLVDF 175

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            ALTG S  NI G+PGIG KTA  LLQ+YG+L  +L    + +  K    + +Y + A L
Sbjct: 176 WALTGISGSNIKGVPGIGPKTATQLLQQYGSLSALLAACQQEEASKPLLKLRQYQDDALL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++LV L+ D+P+   L  +         
Sbjct: 236 AQRLVRLQRDIPLGFNLREIRYPPAPESE 264


>gi|56963870|ref|YP_175601.1| 5'-3' exonuclease [Bacillus clausii KSM-K16]
 gi|56910113|dbj|BAD64640.1| 5'-3' exonuclease [Bacillus clausii KSM-K16]
          Length = 302

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/266 (33%), Positives = 133/266 (50%), Gaps = 16/266 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL------LSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M  E  L LVDG + + R ++AT        L R  +GL VN +  F   L+KL+     
Sbjct: 1   MANEQALLLVDGFNLLSRGYFATSYNRPIEKLERNDEGLYVNGLRVFIQKLFKLVT---- 56

Query: 55  ESIASHFAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           +   SH  V +D P     R + +PDYK  R ++PE L+ Q           G+  +++ 
Sbjct: 57  DYSISHCIVTWDVPREEALRRKTFPDYKLTRNELPEPLIQQYQQCVKTLSYIGVEQLKVP 116

Query: 114 GFEADDIIATYTYIAEKE-GFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIK 170
            +EADDII   +   E E      I S DKDL QL+S  T      K+ +   D      
Sbjct: 117 PYEADDIIGAISAKWEAETSGPCYIYSNDKDLFQLLSSRTTQIVAKKQTEVLFDEASFKA 176

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KK 228
            +G+ P + V ++AL GD+ DNIPG PGIG KTA  L+  YG++E++      I+   K+
Sbjct: 177 SYGLSPTQWVDVKALVGDTSDNIPGCPGIGEKTALPLIAAYGSIESLYQQIDTIQPPLKR 236

Query: 229 RRENILEYAETARLSRKLVMLRTDVP 254
            ++ +L    + +LS+KL  +  D+P
Sbjct: 237 AQKKLLAGQASTQLSKKLSAIICDIP 262


>gi|312171312|emb|CBX79571.1| 5'-3' exonuclease [Erwinia amylovora ATCC BAA-2158]
          Length = 251

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 137/267 (51%), Gaps = 29/267 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG------FCNMLWKLLQNSRKESIAS 59
           HL ++D  + I R                  A+ G        N + +LL ++R     +
Sbjct: 3   HLLIIDALNLIRRIH----------------AVQGSPCQEACLNAVQQLLLHTR----PT 42

Query: 60  HFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           H   +FD    +  +R+++ PDYKA R  +P+ L  ++PL+R A  + G+ +   +G EA
Sbjct: 43  HAVAVFDDDRRSVSWRHQLLPDYKAGRSPMPDALCDEMPLLRSAFASIGVTSWHSRGDEA 102

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+ AT        G   TI+STDK   QL++PT  + D  ++  +D+  +   +G+ P 
Sbjct: 103 DDLAATLASKVAAVGHQATIVSTDKGYCQLLAPTIRIRDYFQKRWLDVPFITDSFGVEPT 162

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     L G S   IPG+ GIG K+AA LL+++G++  I  N  ++ +K  R+ + E  
Sbjct: 163 QLTDYWGLAGISSSKIPGVAGIGGKSAAQLLKQFGSMAAIYQNLDQVPEKW-RKKLAEQQ 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLIL 264
           +TA + +++  L+TD+ +   L+ L L
Sbjct: 222 QTATICKRVATLKTDLLLEGNLKELRL 248


>gi|27363779|ref|NP_759307.1| flap endonuclease-like protein [Vibrio vulnificus CMCP6]
 gi|81449164|sp|Q8DFB4|XNI_VIBVU RecName: Full=Protein Xni
 gi|27359895|gb|AAO08834.1| exonuclease IX [Vibrio vulnificus CMCP6]
          Length = 259

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 129/261 (49%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P  +        N I      L +++  S      +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDPTDIA-----NTIQNTRRTLQRIISESH----PTHIVAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P+YK  R  +PE LL  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHLGSDRGWRAEILPEYKQGRKPMPEPLLNGLEKIQEAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P+++    
Sbjct: 115 LACKVAQHGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDQPFIEQEFGVKPQQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   + GIPGIG K A  +L ++ ++E   ++      KK R    ++ E AR  
Sbjct: 175 GLTGISSSQVTGIPGIGPKAAKEILSQFDDIEQAFLSPD--LPKKYRTKFDQHIELARRC 232

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ L  
Sbjct: 233 KRVSALKTDIELGFNLQDLRF 253


>gi|284031533|ref|YP_003381464.1| 5'-3' exonuclease [Kribbella flavida DSM 17836]
 gi|283810826|gb|ADB32665.1| 5'-3' exonuclease [Kribbella flavida DSM 17836]
          Length = 308

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 27/313 (8%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RAF+  P   +  DG P NA+ G  + + +L++N R   + + +    D 
Sbjct: 1   MLLDTASLYFRAFFGVPDTMKAADGTPTNAVRGLLDFIARLVENHRPTQLVACWD---DN 57

Query: 68  PAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              ++R  + P YKA R             +P+ L  Q+P +R    + GI        E
Sbjct: 58  WRPSWRVALIPSYKAQRVEYVATGGEQVEDVPDRLEVQVPYIRACLDSLGIAIAGAPDHE 117

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKIDIEHVI 169
           ADD+I T ++ A      V +++ D+DL QL+          T      + E  D + ++
Sbjct: 118 ADDVIGTLSHRAT---TPVDVVTGDRDLFQLIDDTRGVRVIYTAAKGVGRAEVYDEKALL 174

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---Q 226
            K+ +P  +      L GD+ D +PG+ GIG KTAA L+  YG L  I   A+       
Sbjct: 175 AKYQVPAGRYADFATLRGDASDGLPGVKGIGEKTAASLVTAYGGLAEIRAAAADPATPMS 234

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
              +  IL+ A+   ++ K+V + TD P++     L  E  +  R +  ++ LE      
Sbjct: 235 PSVKRKILDAADYLDVAPKVVAVATDAPVSAFDPDLPTEVADPQRWLDLVELLELGGSAQ 294

Query: 287 RVATTYDCDAANI 299
           RV    +      
Sbjct: 295 RVMAALNLGPKTT 307


>gi|91228736|ref|ZP_01262648.1| exonuclease IX [Vibrio alginolyticus 12G01]
 gi|91187724|gb|EAS74044.1| exonuclease IX [Vibrio alginolyticus 12G01]
          Length = 260

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 131/268 (48%), Gaps = 13/268 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEANPTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +P  LL  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPLPLLQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E    +   +   K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFESIEAAYASEDLV--PKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+ D+ +   L+ +     N   
Sbjct: 233 KRVAALKCDIELGFNLQDIRFLGPNKAE 260


>gi|296394174|ref|YP_003659058.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Segniliparus rotundus DSM 44985]
 gi|296181321|gb|ADG98227.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Segniliparus rotundus DSM 44985]
          Length = 309

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 142/312 (45%), Gaps = 32/312 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVD +   +RAFYA P      DG PVNA+ GFC+ML  LL+  R + +A    + +  
Sbjct: 1   MLVDAAGLWFRAFYALPESITAPDGSPVNAVRGFCDMLAALLERDRPKRLAVCLDLDW-- 58

Query: 68  PAVTFRNEIYPDYKANRPKI-------------PEMLLPQLPLVRLATQAFGIPAIEIQG 114
               FR ++ P+YKA R                P  L PQ+ ++     A G+  +  +G
Sbjct: 59  -RPKFRVDLLPEYKAQRVAPGEDLAAPGAAASEPASLAPQVDMILALLGAAGVATVGAEG 117

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEH 167
           FEADD+I T    A +    V +++ D+DL+Q+V+                K E +    
Sbjct: 118 FEADDVIGTLA--ARERRDDVVVVTGDRDLLQVVADEPVPVRVRYIGRGVAKSELLGPAE 175

Query: 168 VIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-- 221
           V +++G+PPE+       L  L GD  D +PG+ G+G KTAA L+  +G+L   L  A  
Sbjct: 176 VAERYGLPPERAGAAYAELAVLRGDPSDGLPGVAGVGEKTAAKLISAFGSLAGTLEAAKN 235

Query: 222 SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALE 280
             +   K ++ +L   +  R + ++V +R DVP+    +  +     +  R     +   
Sbjct: 236 GDVAPPKAQKALLAAEDYIRRAARVVFIRDDVPVQWDRDDAITPRTADLARCARLAEQFG 295

Query: 281 FTKLINRVATTY 292
                 R+ T  
Sbjct: 296 TASSAQRLLTAL 307


>gi|153835061|ref|ZP_01987728.1| exodeoxyribonuclease IX [Vibrio harveyi HY01]
 gi|148868496|gb|EDL67599.1| exodeoxyribonuclease IX [Vibrio harveyi HY01]
          Length = 260

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 132/268 (49%), Gaps = 13/268 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTGRTLTRILSEAQPTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMKGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PG+G K A  +L ++ ++E    +   +   K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGVGPKAAKEILTQFEDIEAAYASEELV--PKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+ D+ +   L+ +     N   
Sbjct: 233 KRVAALKCDIELGFNLQDIRFTGPNQAE 260


>gi|90413508|ref|ZP_01221499.1| putative exodeoxyribonuclease IX [Photobacterium profundum 3TCK]
 gi|90325440|gb|EAS41923.1| putative exodeoxyribonuclease IX [Photobacterium profundum 3TCK]
          Length = 258

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 129/266 (48%), Gaps = 17/266 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP--VNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R   A P       G P   N     C  L K++    K S  SH   
Sbjct: 4   HLVVIDALNLIRRVHAAQP-------GEPDVQNTARVCCQALSKII----KFSEPSHIVA 52

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD+      +R E+ P YK  R  +P  L   + +++ A    GI ++   G EADD++
Sbjct: 53  VFDHHGDDRGWRAELLPHYKEGRKPMPPELQAGMEIIQDAFMDLGIDSLLSDGDEADDLV 112

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT           VTIISTDK   QL+SPT  + D  ++  +D   V K++G+ PE++  
Sbjct: 113 ATLALKVASRHQQVTIISTDKGYCQLLSPTLRVRDYFQQRWLDSPFVEKEYGVKPEQLPD 172

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGIPGIG K A  LL  Y +L++IL         K ++ I ++ E+A 
Sbjct: 173 YWGLAGISSSKIPGIPGIGPKAALELLSLYPDLDSILQAED--LPTKWQKKITDHRESAE 230

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDC 267
            S+K+  L+TD+ +   L+ +     
Sbjct: 231 ASKKVASLKTDLTLGFNLQDIRYLAP 256


>gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 374

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 188/406 (46%), Gaps = 50/406 (12%)

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           + +D++LLK +  +I      +   I  +     +  SP ++ + L  K+   +  KT+ 
Sbjct: 1   MPVDKNLLKNMLTDIQSKYQRMY--IEFVRNYGVDPFSPAKVSNWLVNKVGI-TLPKTQK 57

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI----------NKRTQ 697
           G   +  + L++         +++ E RQL +I++T                   +  T 
Sbjct: 58  GALSSQDKALKKY--------EHLKEVRQLMEIRTTKKLLDKLKELNEHTRNDPSDSDTV 109

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+H+ +      TGR++S +PNLQNIP       ++R  F       +I ADYSQIELRI
Sbjct: 110 RIHSQFRQIGAPTGRMSSSKPNLQNIP------PELRVLFRPSKGYSMIVADYSQIELRI 163

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            A       +   F+   D+HR  A+ I G + E+++ + R+ AK INF +IYGISP  L
Sbjct: 164 AAEYTNDEVMINAFKEGKDLHRFTASLITGKSYEEITKEERQLAKAINFGLIYGISPRSL 223

Query: 818 ------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY--VETIFGRRIHY 869
                    + I   EA D+  ++F  + G  ++ E+TK  + ++    V+++ GRR+  
Sbjct: 224 MEYARNNYGVDISLKEAQDFHDKFFQHYRGFKKWHEETKEKLNKHRQITVQSLLGRRMKV 283

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
                            A+N PIQ S +D+ + A+      +    L   ++  +HDE++
Sbjct: 284 SRFTD------------AVNYPIQASGSDMLKMAVNFF--GILKKDLNAYIVNLVHDEII 329

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            E  E+    A  I+  SM+KA    +  +VP++    +  +W E+
Sbjct: 330 VEAKEDITVQAKNILEESMKKAGKILLK-KVPVEYEANIVKSWAEK 374


>gi|292487211|ref|YP_003530083.1| 5'-3' exonuclease [Erwinia amylovora CFBP1430]
 gi|292900414|ref|YP_003539783.1| exodeoxyribonuclease IX [Erwinia amylovora ATCC 49946]
 gi|291200262|emb|CBJ47390.1| exodeoxyribonuclease IX [Erwinia amylovora ATCC 49946]
 gi|291552630|emb|CBA19675.1| 5'-3' exonuclease [Erwinia amylovora CFBP1430]
          Length = 251

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/267 (28%), Positives = 137/267 (51%), Gaps = 29/267 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG------FCNMLWKLLQNSRKESIAS 59
           HL ++D  + I R                  A+ G        N + +LL ++R     +
Sbjct: 3   HLLIIDALNLIRRIH----------------AVQGSPCQEACLNAVQQLLLHTR----PT 42

Query: 60  HFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           H   +FD    +  +R+++ PDYKA R  +P+ L  ++PL+R A  + G+ +   +G EA
Sbjct: 43  HAVAVFDDDRRSVSWRHQLLPDYKAGRSPMPDALCDEMPLLRSAFASIGVTSWHSRGDEA 102

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+ +T        G   TI+STDK   QL++PT  + D  ++  +D+  +   +G+ P 
Sbjct: 103 DDLASTLASKVAAVGHQATIVSTDKGYCQLLAPTIRIRDYFQKRWLDVPFITDSFGVEPT 162

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     L G S   IPG+ GIG K+AA LL+++G++  I  N  ++ +K  R+ + E  
Sbjct: 163 QLTDYWGLAGISSSKIPGVAGIGGKSAAQLLKQFGSMAAIYQNLDQVPEKW-RKKLAEQQ 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLIL 264
           +TA + +++  L+TD+ +   L+ L L
Sbjct: 222 QTATICKRVATLKTDLLLEGNLKELRL 248


>gi|291086231|ref|ZP_06571407.1| exodeoxyribonuclease IX [Citrobacter youngae ATCC 29220]
 gi|291068608|gb|EFE06717.1| exodeoxyribonuclease IX [Citrobacter youngae ATCC 29220]
          Length = 226

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 115/218 (52%), Gaps = 3/218 (1%)

Query: 49  LQNSRKESIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           L      S  +H   +FD  A    +R++  PDYKA RP +P+ L  ++P +R A +  G
Sbjct: 8   LDQLIVHSQPTHAVAVFDDEARNSGWRHQRLPDYKAGRPPMPDELHQEMPALRAAFEQRG 67

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +      G EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D  
Sbjct: 68  VCCWVSSGNEADDLAATLAVKVCQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAP 127

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            + K++G+ P+++     L G     +PG+ GIG K+A  LL ++  LE +  +  ++ +
Sbjct: 128 FIEKEFGVQPQQLPDYWGLAGIGSSKVPGVAGIGPKSATQLLTQFPTLEALYEHLDKVPE 187

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           K  R+ + E+ E A L R +  L+TD+ I   L+ L L
Sbjct: 188 KW-RKKLEEHREMAFLCRDIARLQTDLHIDGNLQQLRL 224


>gi|296165171|ref|ZP_06847719.1| 5'-3' exonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899479|gb|EFG78937.1| 5'-3' exonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 306

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 33/308 (10%)

Query: 15  FIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN 74
             +R+++  P      DG PVNA+ GF + L  ++   R   +     + +      FR 
Sbjct: 1   MWFRSYFGVPSSITAPDGRPVNAVRGFIDSLAVVINQQRPSRLVVCLDLDW---RPQFRV 57

Query: 75  EIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           ++ P YKA+R             ++P+ L PQ+ ++     AFGIP    +GFEADD++ 
Sbjct: 58  DLVPSYKAHRVAEAEPAGEPDVEEVPDDLTPQIDMIMELLDAFGIPTAGAEGFEADDVLG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHVIKKWGIP 175
           T    A +    V ++S D+DL+Q+V+                K        V   +G+P
Sbjct: 118 TLA--ARERRDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVADHYGVP 175

Query: 176 PEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKK 228
             +          + GD  D +PG+PG+G KTAA LL ++G+LE+IL  A   K    K 
Sbjct: 176 QHRAGPAYAEFALMRGDPSDGLPGVPGVGEKTAAALLAQHGSLEHILAAARDPKSKMAKG 235

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLKALEFTKLIN 286
            R  +L   +    + ++V + TD P+++  P + L L   +  R       L     I 
Sbjct: 236 LRSKLLGATDYIEAAGQVVRVATDAPVSLSTPTDALPLAAGDPQRTAKLATKLGVGSSIA 295

Query: 287 RVATTYDC 294
           R+    D 
Sbjct: 296 RLQKALDA 303


>gi|156630376|sp|A0KHE3|XNI_AERHH RecName: Full=Protein Xni
          Length = 267

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/268 (31%), Positives = 129/268 (48%), Gaps = 8/268 (2%)

Query: 2   QKENHLFLVDGSSFIYR--AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
               HL ++D  + I R  A  A   L+     +   A     N   KLL  S      +
Sbjct: 3   NPRPHLLIIDALNLIRRLHAVQAQQALTPAQALIATRA--NLINTCRKLLAASE----PT 56

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
           H   +FD    ++R E+YP YK  R  +P  L   L  ++ A    G+ A+  Q  EADD
Sbjct: 57  HVIAVFDGEVHSWRKEVYPAYKEGRTPMPTELREGLNELQDAFWECGVDALLSQTDEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +IAT      + G   TIISTDK   QL+ P   + D   +  +D   V +++G+ P ++
Sbjct: 117 LIATLATGIAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAFVEQQYGVAPAQL 176

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           V   ALTG    NI G+PGIG KTA  LLQ+YG+L ++L    +    K    + ++ + 
Sbjct: 177 VDFWALTGIGGSNIKGVPGIGPKTATQLLQQYGDLASLLAACQQEDAAKALLKLRQHQDE 236

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDC 267
           A L+++LV L+ D+P+   L  +     
Sbjct: 237 ALLAQRLVRLQRDIPLGFNLREIRYPPA 264


>gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured gamma proteobacterium HF0070_03O15]
          Length = 454

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/475 (21%), Positives = 187/475 (39%), Gaps = 62/475 (13%)

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
             ++  V+L+L  +L  KL   +L   +  L+   +  ++QM   G+  +++ L Q   +
Sbjct: 2   LAKDIEVLLELDQVLERKLRNAQLDRAF-TLECRALPAMAQMWRVGLPWNREELDQCRID 60

Query: 602 ISKNLLSLEEN-IYDLSGE---------------------------------KFNLSSPK 627
              ++  L    I +L  +                                  FN+ S K
Sbjct: 61  YEDDIKELGNEFIRELDNDLPSGKKLPRNEDGSFNLRAKDQGSKRLGTKKYAGFNIKSSK 120

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
           QL + L   L +            + A+D  +    D+P I+ ++ W++  K +      
Sbjct: 121 QLLEKLELVLGYTPV---NNDGKPSVAKDALKNCAADSPTIQTLMTWKRREKRRQMIESI 177

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
                N    R    Y      TGR++S++PN Q IP  ++  Q       +P   K++ 
Sbjct: 178 QDKMSNDGFVR--ASYMQLGADTGRMSSIKPNNQQIPRDSEFRQ----CVQAPQGWKIVD 231

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
           AD+SQ+ELR+ A +AK   +   F+   D+H   A ++ G +        R+ AK+ NF 
Sbjct: 232 ADFSQMELRLAAALAKDKNMTAAFQRGEDLHDYTAEQM-GCD--------RQIAKSANFG 282

Query: 808 IIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
           ++YG     L          +   EA      +   + GI ++  +     R     E  
Sbjct: 283 LLYGAGAEGLRKYAGSSGVIMTNDEAVKIRDNWLTTYSGIRDWQREMNYLSRSTEGDEWP 342

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKML 921
             R    +     K  +     R   N PIQG+ A I + A+ ++   +++      ++ 
Sbjct: 343 ETRVPVSNMRRFLKGDLNRTTVR--CNTPIQGAGAAILKCALGNLWDKVKETGEDKVRIA 400

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +HDEL+  V E+     ++I+  +ME A    ++  VP    + + + W E +
Sbjct: 401 AAVHDELILLVKEDLADDWAEILKTTMENAEAKWLD-DVPALAEVSIGDRWSEVH 454


>gi|156973498|ref|YP_001444405.1| exonuclease IX [Vibrio harveyi ATCC BAA-1116]
 gi|166918970|sp|A7MYB8|XNI_VIBHB RecName: Full=Protein Xni
 gi|156525092|gb|ABU70178.1| hypothetical protein VIBHAR_01189 [Vibrio harveyi ATCC BAA-1116]
          Length = 260

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 13/268 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTGRTLTRILSEAQPTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLIKGLDALQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PG+G K A  +L ++ ++E    +   +   K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGVGPKAAKEILTQFEDIEAAYASEELV--PKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +++  L+ D+ +   L+ +     N  +
Sbjct: 233 KRVAALKCDIDLGFNLQDIRFTGPNKAQ 260


>gi|127513684|ref|YP_001094881.1| exonuclease IX [Shewanella loihica PV-4]
 gi|156630384|sp|A3QGM4|XNI_SHELP RecName: Full=Protein Xni
 gi|126638979|gb|ABO24622.1| 5'-3' exonuclease [Shewanella loihica PV-4]
          Length = 256

 Score =  219 bits (557), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 133/264 (50%), Gaps = 17/264 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLP---VNAIAGFCNMLWKLLQNSRKESIASHF 61
           N   ++DG + + R   A P      +GLP    +A         KLL         SH 
Sbjct: 2   NRFLIIDGLNLVRRIHAAQPNE-NDVNGLPERVTSACR-------KLLSKHN----PSHV 49

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            +++D  A+++R ++Y DYK  R  +PE L   LP ++      G  +I+    EADD+I
Sbjct: 50  TLVWDGDAISWRKKLYDDYKKGRKPMPEALSQALPALKQHLAERGFHSIDAIA-EADDVI 108

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT      +      I+STDK   QL+SP   L+D   ++ I IE   ++ G+   + + 
Sbjct: 109 ATLASKMVQAKGEAIIVSTDKGFTQLLSPQIQLWDHFNQQAITIEDRERQLGVDRSQFID 168

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A+ GDS + IPGIPGIG K+A  LL+ +  L N+  +  +I   K+ + + E    AR
Sbjct: 169 FLAMAGDSGNKIPGIPGIGPKSACELLKTFRTLANVYASLDKI-GAKQAKKLEEGRALAR 227

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           LS KLV L+TD+P+   L +  +E
Sbjct: 228 LSYKLVQLQTDIPLNTRLANFRVE 251


>gi|302669710|ref|YP_003829670.1| 5'-3' exonuclease C-terminal domain-containing protein
           [Butyrivibrio proteoclasticus B316]
 gi|302394183|gb|ADL33088.1| 5'-3' exonuclease C-terminal domain-containing protein
           [Butyrivibrio proteoclasticus B316]
          Length = 385

 Score =  219 bits (557), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 130/353 (36%), Gaps = 73/353 (20%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT------------------PLLSRKHDGLPVNAIAGFC 42
           M  E    L+DGSS +   +Y                      +     G   NAI G  
Sbjct: 41  MANE-KFILIDGSSMLVTNYYGNLPKALLFEKDPEKKEKLYSQILHNDKGQYTNAIYGMM 99

Query: 43  NMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102
             + K++   +     +H    FD    TFR E YPDYK NR + PE L  Q   +    
Sbjct: 100 RTILKIIAEQK----PTHMMFAFDMTRDTFRREKYPDYKGNRGETPEPLKEQFENMEKLL 155

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------- 155
              G        FEADDI+ +     EKE     II+ D D +QLVS  T ++       
Sbjct: 156 LEMGFQVFFDNKFEADDIVGSVVTKFEKE-IPSFIITKDHDYLQLVSDYTRVWLIQTKQE 214

Query: 156 ---------------------DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
                                   K  ++     + ++G+ PE++  L+ + GD+ DNIP
Sbjct: 215 TADELLNKYGAEYGWNSKLAAIPDKAFEVTPPLCLSEYGVKPEQIPDLKGIQGDTSDNIP 274

Query: 195 GIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRR-----------------ENILE 235
           G+ G+    A  LL EYG +E I           K  +                 + + E
Sbjct: 275 GVKGV-SSAAIPLLAEYGTIEKIYEAIDECGGDAKALKALGAHWKEDLGISRSPMKALTE 333

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           Y + A LS++L  +R D      LE   + + N  R         F  LI ++
Sbjct: 334 YRDMAFLSKELAQIRRDYDTGKTLEDFRI-NINKDRAKELFLEYGFKSLIEKL 385


>gi|120404410|ref|YP_954239.1| 5'-3' exonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119957228|gb|ABM14233.1| 5'-3' exonuclease [Mycobacterium vanbaalenii PYR-1]
          Length = 323

 Score =  219 bits (557), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 138/323 (42%), Gaps = 37/323 (11%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
               L L+DG+S  +R+++  P      DG PVNA+ GF + +  ++   R   +     
Sbjct: 2   NTPPLVLLDGASMWFRSYFGVPSSITAPDGRPVNALRGFLDAVATVITRERPHRLVVCRD 61

Query: 63  VIFDYPAVTFRNEIYPDYKANR----------------PKIPEMLLPQLPLVRLATQAFG 106
              D     +R ++ P YKA+R                 ++P+ L PQ+ ++     AFG
Sbjct: 62  ---DDWRPQWRVDLIPSYKAHRVAVPAEEANPPTDVDVEEVPDDLTPQVDMIMEMLDAFG 118

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVK 159
           I     Q  EADD++ T      ++   V ++S D+DL+QLV                 +
Sbjct: 119 IATAGAQQCEADDVLGTLAGRETRD--PVVVVSGDRDLLQLVRDEPVPVRVLYLGRGLAR 176

Query: 160 EEKIDIEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
                   V + + +P ++       L  L GD  D +PG+PGIG KTAA LL ++G+LE
Sbjct: 177 ATTYGPVEVSETYNVPVDRAGPAYAELALLRGDPSDGLPGVPGIGEKTAATLLAQHGSLE 236

Query: 216 NILINASRIKQK---KRRENILEYAETARLSRKLVMLRTDVPITIPLEH--LILEDCNGP 270
            IL  A   K K     R  +L  ++    +  +V + TD  +    +   L L   +  
Sbjct: 237 AILAAAQDPKSKLSRAHRTKLLAASDYIAKAGPVVRVATDADVNFSTDDDALPLAARHPR 296

Query: 271 RLISFLKALEFTKLINRVATTYD 293
           ++    +    +  + R+ T  D
Sbjct: 297 KVAELAERYGVSSSLGRLQTALD 319


>gi|308374490|ref|ZP_07436248.2| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu006]
 gi|308341736|gb|EFP30587.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu006]
          Length = 306

 Score =  219 bits (557), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 135/308 (43%), Gaps = 33/308 (10%)

Query: 15  FIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN 74
             +R+F+  P      DG PVNA+ GF + +  ++   R   +A    + +      FR 
Sbjct: 1   MWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDW---RPQFRV 57

Query: 75  EIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           ++ P YKA+R             ++P+ L PQ+ ++     AFGI      GFEADD++ 
Sbjct: 58  DLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHVIKKWGIP 175
           T      +    V ++S D+DL+Q+V+                K        V +++G+P
Sbjct: 118 TLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLP 175

Query: 176 PEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKK 228
             +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   K    K 
Sbjct: 176 AHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKG 235

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLKALEFTKLIN 286
            R  +L  +   + + ++V + TD P+T+  P + L L   +  R             I 
Sbjct: 236 LRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAELATRFGVESSIA 295

Query: 287 RVATTYDC 294
           R+    D 
Sbjct: 296 RLQKALDT 303


>gi|134098839|ref|YP_001104500.1| potential 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|291005803|ref|ZP_06563776.1| 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|133911462|emb|CAM01575.1| potential 5'-3' exonuclease [Saccharopolyspora erythraea NRRL 2338]
          Length = 305

 Score =  219 bits (557), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 144/307 (46%), Gaps = 28/307 (9%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +   +R+++A P      DG PVN++ GFC+ML KL+   R   + +     +  
Sbjct: 1   MLIDSAGLWFRSYFALPDSLTAPDGTPVNSVRGFCDMLAKLVTERRPARLVACLDNDW-- 58

Query: 68  PAVTFRNEIYPDYKANR--------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
               FR +  P YKA+R         ++P+ L PQ+P++     A GI   E +GFEADD
Sbjct: 59  -RPQFRVDALPSYKAHRVAEEDPDAEEVPDTLTPQIPVILELLDALGIATAEAEGFEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLV----SPTTCLY---DTVKEEKIDIEHVIKKW 172
           +I    +   ++   V +++ D+DL QLV    +P   +Y      K +    E + +++
Sbjct: 118 VIGALAHRETQD--RVEVVTGDRDLFQLVRTEPTPVRVIYVGGGLSKAQNYGPEELAERY 175

Query: 173 GIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-- 226
           G+ P +       +  L GD  D +PG+ GIG KTAA L+ ++G+L+ +L  A       
Sbjct: 176 GLSPGRAGDDYADMAVLRGDPSDGLPGVAGIGEKTAAKLITQFGSLDALLAAAVEGTGVT 235

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIP--LEHLILEDCNGPRLISFLKALEFTKL 284
            + R  + + A+    +  +V      P+ +    + L  +  +  R++   K       
Sbjct: 236 PRVRALLADAADYLAAAPAVVRTVNTAPVVVDRVDDALPSKAVDHERVVELQKRWGLGAS 295

Query: 285 INRVATT 291
           ++R+   
Sbjct: 296 VDRLLAA 302


>gi|238754818|ref|ZP_04616169.1| Uncharacterized exonuclease xni [Yersinia ruckeri ATCC 29473]
 gi|238706978|gb|EEP99344.1| Uncharacterized exonuclease xni [Yersinia ruckeri ATCC 29473]
          Length = 232

 Score =  219 bits (557), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 3/227 (1%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
            N     LQ     S  +H   +FD    + ++R+   PDYKA R  +P+ L  ++P +R
Sbjct: 7   VNTCSNALQTLISHSQPTHAVAVFDEDDRSDSWRHRCLPDYKAGRSPMPDNLQQEMPQLR 66

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
            A    G+      G EADD+ AT        G  VTI+STDK   QL++P   + D  +
Sbjct: 67  QAFADLGVCCWHSPGNEADDLAATLVAKIAGAGHQVTIVSTDKGYCQLLAPRVQIRDYFQ 126

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
           +  +D+  V +++G+ P ++     L G S   IPG+ GIG KTAALLLQ+ G+LE I  
Sbjct: 127 KRWLDLPFVQQEFGVAPHQLPDYWGLAGISSSKIPGVAGIGAKTAALLLQQAGSLEAIYQ 186

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           +  +I +K  R+ + ++   A + +++  L+TD+ ++  L+ L L  
Sbjct: 187 DLEQIPEKW-RKKLQQHQAMAFICKQVATLKTDLSLSGNLQQLRLSQ 232


>gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148]
          Length = 640

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 139/678 (20%), Positives = 240/678 (35%), Gaps = 131/678 (19%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           + KL T  S  F   T  +     K   + +   D+                        
Sbjct: 12  LGKLATSHSLCFDTETLQLQPERGKLRLLQLGARDRDTIVLIDCF--------------- 56

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG 499
               L K   + L+ FF       + HN  +D   L  + I   G+    ML S +L +G
Sbjct: 57  ---QLDKGDWADLRWFFSTPDRFWLAHNAVFDLGWLQEHNIYPAGWVRCSMLASRLLTNG 113

Query: 500 --RSSHDIASIAQKWLSYTRKEILKSRKSS-----IPIDKISDSQVQEHAIENSNVILQ- 551
              S H + S+ +++L   +KE+ K ++ S     +  +++  +     A+   + IL+ 
Sbjct: 114 LPNSKHGLDSVVKRYL---KKELSKEQQRSDWSGDLSEEQLEYAANDVAALMELDPILEH 170

Query: 552 --LWLLLRP--KLIVEKL--LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ-------- 597
                 L P  KL    L  +    R   P      Q      + D   LKQ        
Sbjct: 171 RISRDRLGPAFKLECRALPAMAQMWRTGLPWNAENLQQRKVDYEYDITQLKQDFLMLLDK 230

Query: 598 -VSAEISKNLLSLEENI------------YDLSGEK------------------------ 620
            +  E        E+ I            YD + EK                        
Sbjct: 231 ALPEEHKLPRERDEQRISYLKDKVTEMGHYDKAYEKWYAELESLENSTTFNTRSKDEGSI 290

Query: 621 ---------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
                    FN++SPKQL + L   L  P   +   G+   + Q L      D+ +I+  
Sbjct: 291 RLGTKKYAGFNINSPKQLVEKLTVILGEPP--RDANGKPSASRQALRSYAA-DHEVIQIY 347

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
           LEW++  K +    +S+   ++  T  V   Y      +GR++ ++PN Q IP      +
Sbjct: 348 LEWKRCEK-RRQMIESIQEKMDG-TGFVRASYMQLGAESGRMSCIKPNNQQIPRD----K 401

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           + R    +P    L+ AD+ Q+ELR+ A +A    +   F+   D H + A  I G +  
Sbjct: 402 QFRSCVEAPEGWLLVDADFGQMELRLAAAVADDERMIAAFQAGEDPHTVTAKAI-GCD-- 458

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRL-----ATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
                 R+ AK+ NF ++YG     L        + + +  AAD    +   F G+ ++ 
Sbjct: 459 ------RQTAKSANFGLLYGSGATGLRNYAGGMGITMTQERAADIRNEWLGVFQGVAKWQ 512

Query: 847 EKTKNFVRQN-------GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
                   +          V     RR    ++N               N PIQG+ A I
Sbjct: 513 RDNAKEADETQDYKWAATRVPISGMRRYLQGDMN---------RLTVRCNTPIQGAGAAI 563

Query: 900 TRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            + A+ ++   +++    T ++   +HDE++  V E      +  +   ME A    +  
Sbjct: 564 LKCALGNLWPKVKEAGEDTVRIAAAVHDEILLLVRENAAQEWAATLKQVMEDAEAKWLG- 622

Query: 959 RVPLKVNIKVSNNWQEEN 976
            +P    + V   W E +
Sbjct: 623 EIPALAEVSVGKTWSETH 640


>gi|294635105|ref|ZP_06713616.1| exodeoxyribonuclease IX [Edwardsiella tarda ATCC 23685]
 gi|291091482|gb|EFE24043.1| exodeoxyribonuclease IX [Edwardsiella tarda ATCC 23685]
          Length = 254

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 29/268 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG------FCNMLWKLLQNSRKESIAS 59
           HL +VD  + I R                  A+ G       C  L +LL ++      S
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCHEACCAALRQLLGHT----TPS 43

Query: 60  HFAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           H   +FD    A ++R+ + P YKA R  +P+ L+ ++  +R A  A G+   +  G EA
Sbjct: 44  HAVAVFDDDDRADSWRHRLLPTYKAGRQAMPDSLVAEMDALRAAFAALGVACWQSPGNEA 103

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+ AT      + G  VTI+STDK   QL+SP   + D  ++  +D+  V +++G+ P+
Sbjct: 104 DDLAATLADKVARSGHRVTIVSTDKGYCQLLSPQIQIRDYFQKRWLDLPFVRQEFGVEPQ 163

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     L G S   IPG+ GIG KTAA LL E+G+LE I  +  ++ + + R  +    
Sbjct: 164 QLTDFWGLAGISSSKIPGVAGIGAKTAAALLAEFGSLEAIYQHLPQVAE-RWRHRLEAQR 222

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILE 265
           E A   R++  L+T + +   L+ L L 
Sbjct: 223 EMAETCRRVATLQTTLSLHGNLQQLRLG 250


>gi|15614743|ref|NP_243046.1| 5'-3' exonuclease [Bacillus halodurans C-125]
 gi|17366931|sp|Q9KAV6|EX53_BACHD RecName: Full=5'-3' exonuclease
 gi|10174799|dbj|BAB05899.1| 5'-3' exonuclease [Bacillus halodurans C-125]
          Length = 303

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/275 (29%), Positives = 138/275 (50%), Gaps = 18/275 (6%)

Query: 7   LFLVDGSSFIYRAFYATP------LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           L L+DG + + R ++AT        L R   G  +NA+  F   L++L++    E   +H
Sbjct: 6   LLLIDGFNLLSRGYFATSYGKDEAQLPRNEAGYYINALRVFFPKLFQLIR----EHNVTH 61

Query: 61  FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
            AV +D     + R + +  YKA+R ++PE L+ Q        +  G+  + I  +EADD
Sbjct: 62  VAVAWDVKREDSHRRQAFAFYKASRGELPEALIEQYETATSLLEEIGVAQVTIPPYEADD 121

Query: 120 IIATYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPP 176
            I  +    A++E     I S D+DL+QL+S +T    + K +      E+    + I P
Sbjct: 122 TIGAFACRWAKEEKGHCFIYSNDRDLLQLLSKSTSQIISSKGKDLIYTEENFRNDYNISP 181

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR--ENIL 234
            + V ++AL GD  DNIPG PG+G K+A  L+Q+YG +E +      +  K +R  + ++
Sbjct: 182 AQWVDVKALLGDKSDNIPGCPGVGEKSALPLIQQYGTIETLYEQIEDLDPKYKRYHKKLV 241

Query: 235 EYAETARLSRKLVMLRTDVPI--TIPLEHLILEDC 267
              E+  +S++L  + T++    +  L  L+L   
Sbjct: 242 AGEESVIISKELATITTEIEAISSFSLNSLVLTTP 276


>gi|260773293|ref|ZP_05882209.1| probable exodeoxyribonuclease IX [Vibrio metschnikovii CIP 69.14]
 gi|260612432|gb|EEX37635.1| probable exodeoxyribonuclease IX [Vibrio metschnikovii CIP 69.14]
          Length = 257

 Score =  218 bits (555), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 13/263 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P  S          IA   N   + LQ    ES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDESD---------IARTANTTCRTLQRIINESAPTHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK  R  +P  L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHTLQDRGWRAELLPSYKQGRKPMPISLQNGLEQIQQAWWELGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVASYGEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDAPFIEQEFGVKPSQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+ G+G K A  +L ++ ++E+   +       K R+ + +  E AR+ 
Sbjct: 175 GLTGMSSSQVPGVAGLGPKAAQAILTQFTDIEHAYAS--EALASKYRKKLDQEIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           +++  L+TD+ +   L+ +  E 
Sbjct: 233 KQVATLKTDIELGFNLQDIRFEP 255


>gi|54310102|ref|YP_131122.1| exonuclease IX [Photobacterium profundum SS9]
 gi|46914541|emb|CAG21320.1| putative exodeoxyribonuclease IX [Photobacterium profundum SS9]
          Length = 278

 Score =  217 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 128/266 (48%), Gaps = 17/266 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP--VNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R   A P       G P   N     C  L K++    K S  SH   
Sbjct: 24  HLVVIDALNLIRRVHAAQP-------GEPDVKNTARVCCQALSKII----KFSEPSHIVA 72

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD+      +R ++ P YK  R  +P  L   + +++ A    GI ++   G EADD++
Sbjct: 73  VFDHHGDDRGWRAKLLPHYKEGRKPMPPELQAGMEIIQDAFMDLGIDSLLSDGDEADDLV 132

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT           VTIISTDK   QL+SPT  + D  ++  +D   V K++G+ PE++  
Sbjct: 133 ATLALKVASRHQQVTIISTDKGYCQLLSPTLRVRDYFQQRWLDSPFVEKEYGVKPEQLPD 192

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGIPGIG K A  LL  Y +L+ IL         K ++ I ++ E+A 
Sbjct: 193 YWGLAGISSSKIPGIPGIGPKAALELLSLYPDLDTILQAED--LPTKWQKKITKHRESAE 250

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDC 267
            S+K+  L+TD+ +   L+ +     
Sbjct: 251 ASKKVASLKTDLTLGFNLQDIRYLAP 276


>gi|156630380|sp|Q6LN06|XNI_PHOPR RecName: Full=Protein Xni
          Length = 258

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 128/266 (48%), Gaps = 17/266 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP--VNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           HL ++D  + I R   A P       G P   N     C  L K++    K S  SH   
Sbjct: 4   HLVVIDALNLIRRVHAAQP-------GEPDVKNTARVCCQALSKII----KFSEPSHIVA 52

Query: 64  IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD+      +R ++ P YK  R  +P  L   + +++ A    GI ++   G EADD++
Sbjct: 53  VFDHHGDDRGWRAKLLPHYKEGRKPMPPELQAGMEIIQDAFMDLGIDSLLSDGDEADDLV 112

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT           VTIISTDK   QL+SPT  + D  ++  +D   V K++G+ PE++  
Sbjct: 113 ATLALKVASRHQQVTIISTDKGYCQLLSPTLRVRDYFQQRWLDSPFVEKEYGVKPEQLPD 172

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPGIPGIG K A  LL  Y +L+ IL         K ++ I ++ E+A 
Sbjct: 173 YWGLAGISSSKIPGIPGIGPKAALELLSLYPDLDTILQAED--LPTKWQKKITKHRESAE 230

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDC 267
            S+K+  L+TD+ +   L+ +     
Sbjct: 231 ASKKVASLKTDLTLGFNLQDIRYLAP 256


>gi|294155790|ref|YP_003560174.1| probable 5'-3' exodeoxyribonuclease [Mycoplasma crocodyli MP145]
 gi|291599989|gb|ADE19485.1| probable 5'-3' exodeoxyribonuclease [Mycoplasma crocodyli MP145]
          Length = 293

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 146/303 (48%), Gaps = 20/303 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+KEN   ++DG+  ++++FYAT       +   + G+  N    F   L  LL+  + +
Sbjct: 1   MKKEN-FLIIDGNLLMFQSFYATYNPYNSYVMTSNKGVTTNGTFQFFTTLINLLEELKPK 59

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               +  + FD    T R+E YPDYKA R K PE++  Q   V+       I   EI G 
Sbjct: 60  ----YLFIAFDAKGKTKRHEEYPDYKAGRTKAPEIIYEQFESVKKLLTLLKINHNEIVGA 115

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----TVKEEKIDIEHVIKK 171
           EADD+IAT + I E   +   I S D+DL+QLV     +      T K   ++ ++    
Sbjct: 116 EADDLIATVSKINEVSKY---IYSKDQDLLQLVKEDISIIYKNPETKKFATVNKDNFYDI 172

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           +   P ++   +A+ GD+ DN+PG+ GIG   A  LL+++G++ N+  N  ++   K +E
Sbjct: 173 YNFYPNQIPDYKAINGDTSDNLPGVKGIGKIGAIKLLEQFGSIHNVYDNIDKLTL-KMQE 231

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVAT 290
            +L   E + L  KL  L  +V   + L+  L L + +      +   L+  ++  R+  
Sbjct: 232 KLLNSKEMSLLCYKLACLNNNVS-DLQLDKNLYLYNIDIENAKDYFIELDLLRVFLRLEN 290

Query: 291 TYD 293
              
Sbjct: 291 LKW 293


>gi|117625026|ref|YP_854014.1| exodeoxyribonuclease IX [Escherichia coli APEC O1]
 gi|115514150|gb|ABJ02225.1| exodeoxyribonuclease IX [Escherichia coli APEC O1]
          Length = 214

 Score =  217 bits (553), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 114/209 (54%), Gaps = 3/209 (1%)

Query: 58  ASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
            +H   +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G 
Sbjct: 5   PTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHNEMPALRAAFEQRGVPCWSASGN 64

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ 
Sbjct: 65  EADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQ 124

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+++     L G S   +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  
Sbjct: 125 PQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLET 183

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLIL 264
           + E A L R +  L+TD+ I   L+ L L
Sbjct: 184 HKEMAFLCRDIARLQTDLHIDGNLQQLRL 212


>gi|87119348|ref|ZP_01075246.1| 5'-3' exonuclease [Marinomonas sp. MED121]
 gi|86165739|gb|EAQ67006.1| 5'-3' exonuclease [Marinomonas sp. MED121]
          Length = 262

 Score =  217 bits (553), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 127/269 (47%), Gaps = 17/269 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATP----LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
           MQK     ++DG + I R + A       + R       +      + L +LL     + 
Sbjct: 1   MQK--RFLIIDGLNLIRRLYAALEKESDPVRRIERTQSTS-----LDALSRLLHQFEPDF 53

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                 V+FD    T+R++++P+YK  R  + + LL  +P      +   +PA+ + G+E
Sbjct: 54  ----AVVVFDSNGQTWRHKVFPEYKLGRIPMDDALLQSMPEFAKLFRFNRVPALRLSGWE 109

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIP 175
           ADD+IAT    A ++     IISTDK   QL+       YD   +   D E V +K+G+P
Sbjct: 110 ADDLIATLAVKAAQKDVKSYIISTDKGFTQLLDNECILQYDYFAKLGYDKEWVNEKYGVP 169

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
             ++    AL GD  + IPGI GIG KTA  +L +   +E+I  N       K R+ +  
Sbjct: 170 ATQLGDYWALVGDITNKIPGIKGIGPKTAVKVLSQANTVESIYQNLEAF-DPKMRQMLEG 228

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLIL 264
             E  +LSR L +L+TDV I + L     
Sbjct: 229 GLEQCQLSRSLALLKTDVEIGVKLSQFKY 257


>gi|152965853|ref|YP_001361637.1| 5'-3' exonuclease [Kineococcus radiotolerans SRS30216]
 gi|151360370|gb|ABS03373.1| 5'-3' exonuclease [Kineococcus radiotolerans SRS30216]
          Length = 320

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 133/314 (42%), Gaps = 24/314 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RAF+  P      DG PVNA+ GF + +  L+       + + +   
Sbjct: 10  GRLMLLDSASLCFRAFHGVPESLTAPDGTPVNAVRGFLDAIAHLVATHAPTRLVACWD-- 67

Query: 65  FDYPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            D     FR    P YKA+R       + P  L  Q+ +V     A G+  +   G+EAD
Sbjct: 68  -DDWRPAFRVAALPSYKAHRVSPDGGEETPAALPAQVDVVVEVLAALGVARVGAPGYEAD 126

Query: 119 DIIATYTYI-----AEKEGFAVTIISTDKDLMQLVS------PTTCLYDTVKEEKIDIEH 167
           D++AT T       A + G  V +++ D+DL QLV          C     + + +D   
Sbjct: 127 DVMATLTARASTGSASRPGVPVDVVTGDRDLFQLVDDAAGVRDVYCGKGVRRADLVDQAW 186

Query: 168 VIKKWGI-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK- 225
           +  ++G+        +  L GD  D +PG+ GIG KTAA L+  YG+L  +L  A     
Sbjct: 187 LAARYGVASGAAYADVAVLRGDPSDGLPGVAGIGEKTAAALVGRYGDLAGVLAAAQDPAS 246

Query: 226 --QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
                +R  +L   +    +  +V    DVP+    + L  E  +   L   ++      
Sbjct: 247 DLPPAQRRRLLGAGDYLAAAPVVVATVRDVPLPEVDDALPREPADPAALEELVRRWGVGS 306

Query: 284 LINRVATTYDCDAA 297
            + RV T +    A
Sbjct: 307 SVQRVLTAFTGAPA 320


>gi|333023285|ref|ZP_08451349.1| putative gp44 [Streptomyces sp. Tu6071]
 gi|332743137|gb|EGJ73578.1| putative gp44 [Streptomyces sp. Tu6071]
          Length = 624

 Score =  217 bits (552), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 117/637 (18%), Positives = 224/637 (35%), Gaps = 77/637 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +T D+  + +   T     F   T  +D              +  +    ++      
Sbjct: 21  VEDTGDLIPFFRFTATNPVMGFDTETTGLD------------WWNWGNGFHCRLAQFGNR 68

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN-IKYDKLVLH-RYGISMR---- 484
              +      G    +   ++       +   + I HN   +D  V     GI M     
Sbjct: 69  SEAYVLPVERGTKFASAARIA-----LRDSERV-ITHNGASFDAHVAEVALGIPMEQLSP 122

Query: 485 GFEDIMLMSYVLDSGRSSHD-----IASIAQKWLSYTRKEILKS------RKSSIPIDKI 533
              D    S+++D            +  + + ++     E +K       +K  +  ++I
Sbjct: 123 KIIDTKPTSHLVDPRAVKEGGPGAKLEELIKFYIDAGAAEEVKGSMTALAKKYKVKKEEI 182

Query: 534 ------SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
                  D     +A  +     +L+ +L  K+    +       +     V S ME TG
Sbjct: 183 WSLVDLFDKDFLLYAGMDPVWAFRLFDILYHKIPSRSMQKGLFAWEHRTAYVTSLMERTG 242

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
              D +  ++    ++      E     L  E  N++S +Q+ D L T L +    KTK 
Sbjct: 243 YAHDLEYAERECVNLTNQQREWESKAQTLGVE--NVNSNQQIIDRL-TVLGYKLTKKTKK 299

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
           G           +    +P+ + I+  ++  K + T+ +S       +  RVH   +   
Sbjct: 300 GNISVDDDV---LTSIAHPLTEAIVNAKKAGKWRKTWFESAIKG-RDKNGRVHCSINSCQ 355

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS----------PPTKKLISADYSQIELRI 757
             T R+              D   +      +                 S D+S +ELR+
Sbjct: 356 ARTARMTITGAIPAQTLPAGDPYVRHEFLADAAVLGENGEVLEEEHVSCSIDFSNMELRV 415

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ-MRRHAKTINFSIIYGISPFR 816
           +A  +    +   F   +D+H + A   FG   E ++    R+  K  NF++ +G     
Sbjct: 416 MAAASGDPVMLDAFNRGIDLHNITAIAAFGPMPEGMTKHPKRKAGKGTNFAVGFGGGWKA 475

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           +     +P  +A   ++ ++  + G+  + ++ +    + G++ T  GRRI  D+     
Sbjct: 476 VTDGFGVPEPDAKKAVEAFWGTYKGVKRFADQLQRQAIRTGHIYTATGRRIPVDKTR--- 532

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
                    AA+N  IQ SA DIT RA++ +HK+         M L IHDE+VF  P+  
Sbjct: 533 -------PYAALNYYIQSSARDITVRALLELHKA----GYTPWMRLVIHDEIVFSFPKSR 581

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
               +      M         L +P +V I  + +W 
Sbjct: 582 AEELAAKAAEIM---TFTFKGLVIPAEVEIG-ARSWG 614


>gi|213027747|ref|ZP_03342194.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 223

 Score =  217 bits (552), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 3/218 (1%)

Query: 49  LQNSRKESIASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           L      S  +H   +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G
Sbjct: 5   LDQLIIHSQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRG 64

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           +      G EADD+ AT      + G   TI+STDK   QL+SP   + D  ++  +D  
Sbjct: 65  VRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAP 124

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            + K++G+ P ++     L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +
Sbjct: 125 FIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPE 184

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           K  R+ +  + E A L R +  L+TD+ I   L+ L L
Sbjct: 185 KW-RKKLETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 221


>gi|90020805|ref|YP_526632.1| exodeoxyribonuclease IX [Saccharophagus degradans 2-40]
 gi|89950405|gb|ABD80420.1| 5'-3' exonuclease [Saccharophagus degradans 2-40]
          Length = 289

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 133/285 (46%), Gaps = 13/285 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            ++L+D S + ++ ++A P      +G P   + G+ N L ++L +       S+ A  F
Sbjct: 4   RVYLIDVSIYFFKYYFALPDNWWSEEGNPTAGVYGYANWLKRMLADLN----PSYIAACF 59

Query: 66  DYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D    T FRN+IYPDYK +R    ++L  QL   R  T+A GIP       EADD++ T 
Sbjct: 60  DESLTTCFRNDIYPDYKCSRVLPDDLLAFQLAASRQVTEALGIPCYASATHEADDLLGTL 119

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              A  +G  V ++S DKDL QL+   T  L+D      +    + +K G+ PE++V L 
Sbjct: 120 AVRAASKGLEVCVLSRDKDLSQLIGCETAQLWDYPDGIPMKRAQIHEKLGVWPEQVVDLL 179

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237
           AL GD  D+IPG+PG+G KTAA LL    +   +  N   +        K     +  Y 
Sbjct: 180 ALVGDVGDDIPGVPGVGVKTAAQLLTHMPSWAEVRSNIPAVANLPIRGAKSLAAKLEAYQ 239

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
           +   ++ +L  +    P+      L        +L     +L F 
Sbjct: 240 DQVDMAYQLARIDCKAPLGRRF-SLARAQVKRAQLRQLAASLGFP 283


>gi|269962334|ref|ZP_06176684.1| exodeoxyribonuclease IX [Vibrio harveyi 1DA3]
 gi|269832830|gb|EEZ86939.1| exodeoxyribonuclease IX [Vibrio harveyi 1DA3]
          Length = 260

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/268 (30%), Positives = 131/268 (48%), Gaps = 13/268 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTGRTLTRILSEAQPTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHSEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PGIPG+G K A  +L ++ ++E    +   +   K R+   E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGIPGVGPKAAKEILTQFEDIEAAYASEELV--PKYRKKFDEHIESARLC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +K+  L+ D+ +   L+ +     N  +
Sbjct: 233 KKVAALKCDIELGFNLQDIRFTGPNKAQ 260


>gi|300718139|ref|YP_003742942.1| exodeoxyribonuclease IX [Erwinia billingiae Eb661]
 gi|299063975|emb|CAX61095.1| Exodeoxyribonuclease IX [Erwinia billingiae Eb661]
          Length = 253

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 134/269 (49%), Gaps = 29/269 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG------FCNMLWKLLQNSRKESIAS 59
           HL +VD  + I R                  A+ G        N L +L+++S      +
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCQETCVNALHQLIRHSN----PT 43

Query: 60  HFAVIFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           H   +FD       +R+++ P YKA R  +P+ L  ++PL+R A  A G+   ++ G EA
Sbjct: 44  HAVAVFDDDERHEGWRHQLLPGYKAGRTPMPDSLHEEMPLLRAAFAAAGVACWQVAGEEA 103

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+ AT        G   TI+STDK   QL++P   + D  ++  +D+  +  ++G+ P 
Sbjct: 104 DDLAATLACKVAAGGHQATIVSTDKGYCQLLAPAIQIRDYFQKRWLDVPFIDAEFGVSPA 163

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     L G S   IPG+ GIG K+AA LL+E+G L+ +    + +  K  ++ + E+ 
Sbjct: 164 QLTDYWGLAGISSSKIPGVAGIGAKSAAELLREFGTLDAVYQQLASVPTKW-QKKLQEHQ 222

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILED 266
           + A + R++  L+TD+ +   L+ L L D
Sbjct: 223 QMAEICRQVATLKTDLVLEGNLKELRLPD 251


>gi|108759097|ref|YP_628609.1| 5'-3' exonuclease family protein [Myxococcus xanthus DK 1622]
 gi|108462977|gb|ABF88162.1| 5'-3' exonuclease family protein [Myxococcus xanthus DK 1622]
          Length = 294

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/290 (33%), Positives = 140/290 (48%), Gaps = 11/290 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDG+  +YRA ++        DG  V A  G  + L  LL ++  +   +H AV F
Sbjct: 2   RLHLVDGTYELYRAHFSPRPGHAAPDGQDVKATVGLMSSLLALLHDA--DEAVTHVAVAF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  +FRN ++  YK++   +P  L  Q  L   A +A G+ A  ++  EADD +AT  
Sbjct: 60  DNPIRSFRNALFDGYKSD-EGVPPELHAQFDLAEEAVRALGVTAWSMKEQEADDALATAA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                    V +++ DKDL Q V        D  +E+ +D + V  K G+PP  +  L A
Sbjct: 119 ARWADTVEQVRLLTPDKDLGQCVRGSRVVQVDRRQEKVLDEDAVRAKLGVPPASVPDLLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRENILEYAET 239
           L GD+ D IPG+PG G K A+ LL  +G+LE+I   AS  K      +K    + E+ + 
Sbjct: 179 LMGDAADGIPGLPGFGEKGASALLSAHGHLEDIPAEASEWKVRPRGAEKLAATLREHRDA 238

Query: 240 ARLSRKLVMLRTDVPITIP--LEHLILEDCNGPRLISFLKALEFTKLINR 287
           A L R+L  L TD P+     LE L  +        +F   L  T L  R
Sbjct: 239 ALLYRRLATLVTDAPLPGTSSLEDLAWKGVPPAVYEAFCDRLGLTTLKRR 288


>gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1]
 gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1]
          Length = 618

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 115/642 (17%), Positives = 239/642 (37%), Gaps = 86/642 (13%)

Query: 369 TKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
            +  +    + W++ + ET    +    T  +  +   P  + ++    + +        
Sbjct: 19  ERPEDLDPFRAWIRRQAETRTPVAVDTETCGLKIYAWGPGFLRLAQFGNETEAW------ 72

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN------IKYDKLVLHRYGI 481
              L +    +          +L  L            GHN      +  D+ +     +
Sbjct: 73  --ALPIEHGPEYVEAAAWALRVLPDL-----------TGHNWSGFDALVSDEHLGVPLEV 119

Query: 482 SMRGFEDIMLMSYVLDSGRSSHD-----IASIAQKWLSYTRKE-------ILKSRKSSIP 529
           +     D  +++ ++D  +         + + + +++  T  +       + KS K  I 
Sbjct: 120 TCAKVTDTQILAKLVDPRQQMEGGIGSGLKANSARYIDPTAPDTQDGLKAVFKSLKLKIT 179

Query: 530 --IDKISDSQ--VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
               KI        E+ + +  +  +L   L   L    +       +  +  + +QM  
Sbjct: 180 EGFAKIPLDHPTYLEYGLLDVILTSRLRPRLEATLAKLGVPKTLAVYEHRVARICAQMVR 239

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            G+ +D++    + ++++ +     E       E  N  S +Q+   L   L      KT
Sbjct: 240 AGLVLDEEYTTGLQSDLAYDADRYSEVALGYGVESVN--SARQVSAALLD-LGETLTEKT 296

Query: 646 KTGQWKTTAQDLEQINCGD-----------NPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            +G  K     L  +   D           N +   +L  ++  K +S YAD+   +++ 
Sbjct: 297 ASGALKVDKAVLMALADLDRDWKPIRSREPNVLADAVLRSKRAGKWRSAYADNFLENVDA 356

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +  R+H         T R++  +P +Q +P        IRRA ++ P + ++S D+  +E
Sbjct: 357 QG-RIHPNVQSMQARTFRMSVTQPAVQTLPSSDK---MIRRALLADPGEVMVSVDFQAVE 412

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LR+LA +A +  +        D+H   A  +FG   +  + + R+ +K I F  +YG   
Sbjct: 413 LRVLAALADVKRMKAAIAAGEDLHSFTARLVFG---DGFTDKDRKVSKGIAFGKVYGGGA 469

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV-ETIFGRRIHYDEIN 873
             ++ Q   P       + +Y   +P +    +  +     N  V  +I G R+  D   
Sbjct: 470 ATVSRQTGAPLGAVQRAMAKYDQVYPEVGRAAKDWRIEAFNNHMVGISITGHRLPLDRDR 529

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S           A  N  +Q +A D   +A+I +     +  L   + L IHDE++  VP
Sbjct: 530 S----------YAITNYLVQSTARDCLGQALIHMD----EAGLVPYLRLPIHDEVLASVP 575

Query: 934 EEEITTASQIIVHSMEKACLPKINLR-VPLKVNIKVSN-NWQ 973
           + E    S+ I  +M        +LR VP++ + ++   +W 
Sbjct: 576 KAEAEEISRAIAKAM------TFSLRGVPIEADAEIGKRSWG 611


>gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29]
          Length = 478

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/502 (19%), Positives = 193/502 (38%), Gaps = 74/502 (14%)

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
           L   +       +   +   +A ++  V+ +L  +L+ +L    L+  +  L+   +  +
Sbjct: 5   LDKEQQKSNWSGVLTQEQLIYAAKDVEVLCELDRILKDELCQYSLMEAF-TLECKALPAM 63

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEEN-IYDL----------------------- 616
           +QM  TG+  +++ L Q   +   ++  L +  I +L                       
Sbjct: 64  AQMWRTGLPWNKENLAQRKLDYEHDIKELSKEFIRELDSALPEGQKLPRDEDDSFNLRAK 123

Query: 617 ------SGEK----FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
                 +G K    FNL+SP+QL   L   L     + +K                G +P
Sbjct: 124 DEGSVRAGTKKLKGFNLNSPQQLKSKLSAVLGVKLESVSKNA---------LSEFAGHHP 174

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +++  L W++  K +            +    V   Y      TGR+    PN Q IP  
Sbjct: 175 VVQMYLNWKKAEKRRQMITSIQEKM--RPDGFVKASYMQLGAETGRMTCFNPNNQQIPKD 232

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
               ++ R    +P    ++ AD+ Q+ELR+ A +A+   + Q F++  D+H + A  I 
Sbjct: 233 ----KQFRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMIQAFKDGEDLHTVTAEAIG 288

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRL-----ATQLRIPRSEAADYIKRYFHRFPG 841
                      R+ AK+ NF ++YG     L      + + +   EA      +F  F G
Sbjct: 289 CT---------RQIAKSANFGLLYGSGAKGLRNYAAGSNVSMTLEEAQKVRSDWFQEFEG 339

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR------NINERAAINAPIQGS 895
           I ++ +K  +    N       G++     I  P++ +R              N P+QG+
Sbjct: 340 IAKWHKKENDKA--NNPNPRFKGKKCGIQFIEIPETGMRRDLPGDANRLTVRCNTPVQGA 397

Query: 896 AADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
            A I ++A+  +   + +    T ++   +HDE++  V E+     +  +   ME+A   
Sbjct: 398 GAAILKQALGKLWPLVREAGEETVRIAAAVHDEILLLVREDAAEEWAATLKQVMEEAEAK 457

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
            +   +P    +     WQE +
Sbjct: 458 WLG-EIPALAEVSFGKTWQETH 478


>gi|302855051|ref|XP_002959026.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
 gi|300255592|gb|EFJ39887.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
          Length = 2736

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 131/240 (54%), Gaps = 7/240 (2%)

Query: 729  LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFG 787
            +   +R AF++PP   +++ADY QIELR++AH +  + L  +  N + D   ++AAE   
Sbjct: 2491 MHFNLRNAFVAPPGHVILTADYKQIELRLMAHFSGDSALCDLLRNPAQDPFTLLAAEWKR 2550

Query: 788  VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
            +++E+V+P++R  AK + + ++YG+    LA +L +   EAA+    +    PG+  +++
Sbjct: 2551 LSVEQVTPEVRVQAKRLAYGMLYGMGTSTLAAELGVSVHEAAELSDNFRRAIPGVDRWMK 2610

Query: 848  KTKNFVRQNGYVETIFGRRIHYDEINSPK----SSIRNINERAAINAPIQGSAADITRRA 903
            +     R  GY+ T+ GRR ++  IN        S R  +ER AIN+  QGSAAD+ + A
Sbjct: 2611 EVVEQCRSCGYIVTLMGRRRYFPRINERSCKEARSQRAQSERQAINSVCQGSAADLVKAA 2670

Query: 904  MISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            MIS+ + + +       +++L +HDELV EV    +   + +    +E     +    +P
Sbjct: 2671 MISLTRRIREEGWAGRARLVLMVHDELVLEVETGLLPAMAALTRDVLEGEERNEFIPSIP 2730



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/382 (15%), Positives = 133/382 (34%), Gaps = 49/382 (12%)

Query: 404  SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
             +   I++   D        +       +   +  +         +LS +++   +    
Sbjct: 2066 CRLEGISLCAFDGCG-LYVPLVAATEVAAAEPATAAERAAREAAAVLSEVRQLLAHAGST 2124

Query: 464  KIGHNIKYD-KLVLHRYGISMR------------------------GFEDIMLMSYVLDS 498
            K+   +K          G                               D+ ++ ++L+ 
Sbjct: 2125 KVTFELKQQLMHARAALGAVAMSAAAAPEGPLPAAPAADLPLLVGDPVVDVRILLWMLNP 2184

Query: 499  GR-----SSHDIASIAQKWLSYTRK--EILKSRKSSIPIDKISDSQV--------QEHAI 543
                           A K L    K  E+  +   +  +  +  +          Q  A 
Sbjct: 2185 DDPVNLPRGKSGKLTATKGLEERMKQPEVCGTSGHAKALGALHCAGAVVRQLPTRQADAC 2244

Query: 544  ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
              + +  +++L   PKL  E LL     ++ P++ +++ ME TG+ +   +L+     + 
Sbjct: 2245 RRAAMARRIYLDKLPKLQSEGLLRPLLEVEMPLVRILAAMEATGVALAPRVLRDQRGPLE 2304

Query: 604  KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT-----AQDLE 658
              L  L    +  +G  F+L+SPK + ++LF  L         T   +           E
Sbjct: 2305 ARLRQLAHKAHVAAGMTFDLNSPKDVSEVLFQHLNLQPPPCAFTSHHQKHPSTKXEVLEE 2364

Query: 659  QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                  +PI++ +L++R L K+ + + ++L +    +   +   +   +T TGRL+  EP
Sbjct: 2365 LEESTHHPILRYLLDYRSLHKLLTGFVETLYSTARGQ---LCGSWLHTATATGRLSMDEP 2421

Query: 719  NLQNIPIKTDLGQKIRRAFISP 740
            NLQ IP   +   ++ +     
Sbjct: 2422 NLQTIPRPVEYCFQLSQEESPR 2443


>gi|165927080|ref|ZP_02222912.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939839|ref|ZP_02228379.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|270487354|ref|ZP_06204428.1| 5'-3' exonuclease C-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|165912242|gb|EDR30879.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920976|gb|EDR38200.1| exodeoxyribonuclease-9 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|270335858|gb|EFA46635.1| 5'-3' exonuclease C-terminal domain protein [Yersinia pestis KIM
           D27]
          Length = 239

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 5/234 (2%)

Query: 36  NAIAG--FCNMLWKLLQNSRKESIASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEML 91
           +A+ G          LQ   + S  SH   +FD    + ++R++  PDYKA R  +P+ L
Sbjct: 6   HAVQGSPCVKACQHALQQLIQHSQPSHAVAVFDEDDRSDSWRHQCLPDYKAGRSPMPDNL 65

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             ++PL+R A    G+      G EADD+ AT        G  VTI+STDK   QL++P 
Sbjct: 66  QQEMPLIRQAFNELGVACWHSPGNEADDLAATLVVKVAGAGHQVTIVSTDKGYCQLLAPN 125

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             + D  ++  +D+  V +++G+ P ++     L G S   IPG+ G+G KTA LLLQ+ 
Sbjct: 126 IQIRDYFQKRWLDMPFVKQEFGVLPRQLPDYWGLAGISSSKIPGVAGVGAKTATLLLQQA 185

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
             LE +  N   I +K  R+ + ++ + A   +++  L+TD+ ++  L+ L L+
Sbjct: 186 DTLEVLYQNLESIPEKW-RKKLQQHQQMAFTCKQIATLKTDLLLSGNLQQLRLK 238


>gi|15640914|ref|NP_230545.1| exonuclease IX [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254848033|ref|ZP_05237383.1| exonuclease IX [Vibrio cholerae MO10]
 gi|9655353|gb|AAF94060.1| exodeoxyribonuclease IX [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|254843738|gb|EET22152.1| exonuclease IX [Vibrio cholerae MO10]
          Length = 283

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   +  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 257 KQVSALKTDIELGFNLQDIRF 277


>gi|284991144|ref|YP_003409698.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing
           protein [Geodermatophilus obscurus DSM 43160]
 gi|284064389|gb|ADB75327.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 305

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 113/228 (49%), Gaps = 18/228 (7%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RAFY  P      DG PVNA+ GF +M  +L+     + + + +    D 
Sbjct: 1   MLLDAASLYFRAFYGVPTSVTSPDGRPVNAVRGFLDMTARLVTAHAPDRLVACWD---DD 57

Query: 68  PAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
               FR E  P YKA+R       + P+ L PQ+P++     A G+  +   G+EADD+I
Sbjct: 58  WRPAFRVEALPSYKAHRLSPDGGEETPDELGPQVPVLVEVLAAAGLARVGAPGYEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIKKWGIP 175
            T T  A      V +++ D+DL QLV       +  T +     E +D   V  K+GIP
Sbjct: 118 GTLTTRAR---GPVDVVTGDRDLFQLVDDERGVRVLYTARGITDLELVDEAAVTAKYGIP 174

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
                    L GD  D +PG+ GIG KTAA L+ E+G+L  I   A+R
Sbjct: 175 GRAYADFAVLRGDPSDGLPGVAGIGAKTAAALITEFGDLAGIRAAAAR 222


>gi|254227030|ref|ZP_04920589.1| exodeoxyribonuclease IX [Vibrio cholerae V51]
 gi|125620434|gb|EAZ48809.1| exodeoxyribonuclease IX [Vibrio cholerae V51]
          Length = 283

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 199 GLTGISSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 257 KQVSALKTDIELGFNLQDIRF 277


>gi|326573170|gb|EGE23139.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 835

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 116/677 (17%), Positives = 259/677 (38%), Gaps = 114/677 (16%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
              +I   + +L+   + +  I T  ++   S+  +IA +    +       + +     
Sbjct: 164 TNDEIDDVLIRLKQYPALACDIETTGLE-LGSELYSIAFAWSQHEGCAFKVTDKV----- 217

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD--KLVLHR------------ 478
                               LK+FFE+   + I HN  +D   ++ H             
Sbjct: 218 -------------------QLKRFFESYSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMI 258

Query: 479 YGIS--MRGFEDIMLMSYVL--DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           +G+    R  ED  +++Y+   ++  +   +  ++ +++     ++    K  +      
Sbjct: 259 HGLHTMCRNIEDTKIIAYLATNNTQGNILGLKELSHEFVGNYAIDV----KHVLNH---P 311

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            + V E+ ++++     ++   +PK++ +    +Y+ +  P I  + Q+E+ G+ ++ D 
Sbjct: 312 LATVLEYNLKDTLGTYWVFNKYKPKMLSDNQDSIYKTIMLPSIKTIIQIELHGMPMNMDK 371

Query: 595 LKQVSAEISKNLLSLEENIY--------------------------------DLSGEKFN 622
           +  V  ++        E IY                                 +   +F 
Sbjct: 372 VVVVKKQLQNQANDALEQIYASEHVKAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFK 431

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCGDNPIIKNI---LEWRQL 677
            +S   L  +L+  L  P    T   Q    A  +E++  +  D+ II  +   LE+ ++
Sbjct: 432 PNSIAHLAILLYDYLGLPILDYTPNKQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKV 491

Query: 678 SKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
            KI ST+  +            +H  ++L  T++ RL+S  PNLQ +P  +  G+ I++ 
Sbjct: 492 QKILSTFIPAFEKAQQKDDWHYLHGSFNLGGTLSNRLSSSNPNLQQLPSGSTFGKTIKQC 551

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--- 793
           F +P     + AD++ +E RI   + K     +++ +  D H   A   F   +  +   
Sbjct: 552 FQAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFVNQMPDIINT 611

Query: 794 ----------SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                      P++R+ +K  +F++ YG   F L        S+A +    Y   +   +
Sbjct: 612 KESINSIKHKYPELRQESKAPSFALQYGGQYFTLMKNCGFSESKAKEIETNYHKMYEVSN 671

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEI------NSPKSSIRNINERAAINAPIQGSAA 897
            + ++      + GY++  FG RI    +       S    + +   R+  NA    S  
Sbjct: 672 AWTQRKLEQCAKQGYIDVAFGLRIRTPVVGKTVLNTSKTPYLASAEARSVGNAISGQSYC 731

Query: 898 DITRRAMISVHKSL--EDHKLATKMLLQIHDELVFEVPEEEITTAS---QIIVHSMEKAC 952
            +T RA+    + +   +++     +  IHD +   V + ++         +++ M+   
Sbjct: 732 QLTNRAINEFMERVWASEYQYDIMPVCLIHDAIYL-VIKNDVEIVKWVNDNLINCMQWQE 790

Query: 953 LPKINLR-VPLKVNIKV 968
           LP+I    + L+  + +
Sbjct: 791 LPEIRHDQIKLEAELGI 807


>gi|262276542|ref|ZP_06054351.1| exonuclease IX [Grimontia hollisae CIP 101886]
 gi|262220350|gb|EEY71666.1| exonuclease IX [Grimontia hollisae CIP 101886]
          Length = 258

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P      D      +      L K++++S      +H   +F
Sbjct: 4   HLVIIDAMNLIRRVHAAQP---NPEDIASTAQV--CTRALHKIIRSSE----PTHIVAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R ++ P+YK  R  +PE+L   L  ++ A    G+ ++   G EADD+IAT
Sbjct: 55  DHTGQDRGWRAKLVPEYKQGRKPMPEVLQQGLDSIQDAFWEEGVDSLLSSGDEADDMIAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTI+STDK   QL+ PT  + D  ++  +D   + K++ + PE++    
Sbjct: 115 LAIKVANHDGQVTIVSTDKGYCQLLQPTVRIRDYFQQRWLDSPFIEKEFAVQPEQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   + G+PGIG KTA+ LLQ YG LE +   A  I + K ++ +    E A   
Sbjct: 175 GLTGISSSGVSGVPGIGPKTASTLLQRYGTLEQLYA-AEDI-EPKWQKKLEGTQELALRC 232

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 233 KQVATLKTDITLGFNLQDIRY 253


>gi|149192512|ref|ZP_01870693.1| exonuclease IX [Vibrio shilonii AK1]
 gi|148833653|gb|EDL50709.1| exonuclease IX [Vibrio shilonii AK1]
          Length = 260

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 129/263 (49%), Gaps = 13/263 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R  +A        D      I      L ++L  S+     +H   +F
Sbjct: 4   HLVIIDALNLIRRV-HAVQPDPTDIDRT----IQTTSRTLHRILDESK----PTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R +I P+YK NR  +PE L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRADILPEYKQNRKPMPEPLFNGLEKIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   Q++SPT  + D  +   +D   V +++G+ PE++    
Sbjct: 115 LAVKVASHNEKVTIISTDKGYCQILSPTLQIRDYFQHRWLDAPFVEQEFGVKPEQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+ G+G K A  +L ++ ++E+   +       K R+ + E+ E AR  
Sbjct: 175 GLTGISSSQVPGVAGVGPKAAKEILNQFTDIESAYTSDD--LAAKYRKKLDEHIEMARKC 232

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           +++  L+TD+ +   L+ +  E 
Sbjct: 233 KQVAALKTDIELGFNLQDIRFEG 255


>gi|121588140|ref|ZP_01677887.1| exodeoxyribonuclease IX [Vibrio cholerae 2740-80]
 gi|121729621|ref|ZP_01682114.1| exodeoxyribonuclease IX [Vibrio cholerae V52]
 gi|153216617|ref|ZP_01950544.1| exodeoxyribonuclease IX [Vibrio cholerae 1587]
 gi|153802295|ref|ZP_01956881.1| exodeoxyribonuclease IX [Vibrio cholerae MZO-3]
 gi|153817193|ref|ZP_01969860.1| exodeoxyribonuclease IX [Vibrio cholerae NCTC 8457]
 gi|227081073|ref|YP_002809624.1| exodeoxyribonuclease IX [Vibrio cholerae M66-2]
 gi|298498981|ref|ZP_07008788.1| exodeoxyribonuclease IX [Vibrio cholerae MAK 757]
 gi|121547631|gb|EAX57730.1| exodeoxyribonuclease IX [Vibrio cholerae 2740-80]
 gi|121628598|gb|EAX61076.1| exodeoxyribonuclease IX [Vibrio cholerae V52]
 gi|124114189|gb|EAY33009.1| exodeoxyribonuclease IX [Vibrio cholerae 1587]
 gi|124122177|gb|EAY40920.1| exodeoxyribonuclease IX [Vibrio cholerae MZO-3]
 gi|126512227|gb|EAZ74821.1| exodeoxyribonuclease IX [Vibrio cholerae NCTC 8457]
 gi|227008961|gb|ACP05173.1| exodeoxyribonuclease IX [Vibrio cholerae M66-2]
 gi|297543314|gb|EFH79364.1| exodeoxyribonuclease IX [Vibrio cholerae MAK 757]
          Length = 283

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 257 KQVSALKTDIELGFNLQDIRF 277


>gi|188534853|ref|YP_001908650.1| Exodeoxyribonuclease IX [Erwinia tasmaniensis Et1/99]
 gi|188029895|emb|CAO97779.1| Exodeoxyribonuclease IX [Erwinia tasmaniensis Et1/99]
          Length = 251

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 135/270 (50%), Gaps = 29/270 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG------FCNMLWKLLQNSRKESIAS 59
           HL ++D  + I R                  A+ G        + + +LL ++R     +
Sbjct: 3   HLLIIDALNLIRRIH----------------AVQGSPCQEACLHAVQQLLLHTR----PT 42

Query: 60  HFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           H   +FD    +  +R+ + PDYKA R  +P+ L  ++PL+R A  + G+ +    G EA
Sbjct: 43  HAVAVFDDEQRSDSWRHRLLPDYKAGRSPMPDALCEEMPLLRSAFASIGVKSWHATGDEA 102

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+ AT        G   TI+STDK   QL++P   + D  ++  +D+  +   +G+ P 
Sbjct: 103 DDLAATIASKVAAAGHQATIVSTDKGYCQLLAPRVQIRDYFQKRWLDMPFISNTFGVEPA 162

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++     L G S   IPG+ GIG K+AA LLQ++G+L  I  +  ++ +K  R  + E+ 
Sbjct: 163 QLTDYWGLAGISSSKIPGVGGIGGKSAAQLLQQFGSLAAIYQDLEQVPEKW-RNKLSEHQ 221

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           + A + +++  L+TD+ +   L+ L LE C
Sbjct: 222 KMAAICKQVATLKTDLVLKGNLKELRLEQC 251


>gi|269115188|ref|YP_003302951.1| DNA polymerase I [Mycoplasma hominis]
 gi|268322813|emb|CAX37548.1| DNA polymerase I [Mycoplasma hominis ATCC 23114]
          Length = 297

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 139/303 (45%), Gaps = 18/303 (5%)

Query: 1   MQKEN-HLFLVDGSSFIYRAFYATP----LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
           M+K+N  L ++DG+   YR++YAT      +    +G   NAI       +K L    K+
Sbjct: 1   MKKDNEQLLIIDGTFLAYRSYYATSYNATQILTTSEGFETNAIV----AFFKTLFLLLKK 56

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               +  + FD    TFR+E++P YK  R K PE    QL L++       I      GF
Sbjct: 57  LNPKYIYIAFDSHVKTFRHELFPSYKDGRKKAPESFYLQLDLIQEILTNINIQNQYYNGF 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE---KIDIEHVIKKW 172
           EADDII     +  K      I S D+DL QL+   T +    K      ++ ++  + +
Sbjct: 117 EADDII---AKVKNKFNLNTIIFSGDQDLNQLIDEQTAIIKKDKTGSFFFLNSKNFSEYY 173

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
              P +++  +AL GD+ DN  G+ GIG K+A  LL +Y  +ENI  N  +IK     + 
Sbjct: 174 DFLPNQVIDYKALVGDNSDNFKGVVGIGPKSAKTLLDDYKTIENIYNNIEKIKPS-IAKK 232

Query: 233 ILEYAETARLSRKLVMLRTDVPITIP-LEHLILEDCNGP-RLISFLKALEFTKLINRVAT 290
           ++EY E   L + L  LR D  + +P LE+L + +              E   L N +  
Sbjct: 233 LIEYKENTFLDKYLATLRIDFDLQLPELENLAISNIAISNSAKQIFGKFELYSLENSLKN 292

Query: 291 TYD 293
             +
Sbjct: 293 LIN 295


>gi|254285570|ref|ZP_04960534.1| exodeoxyribonuclease IX [Vibrio cholerae AM-19226]
 gi|150424432|gb|EDN16369.1| exodeoxyribonuclease IX [Vibrio cholerae AM-19226]
          Length = 283

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/261 (29%), Positives = 128/261 (49%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
             Y        VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LAYKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 257 KQVSALKTDIELGFNLQDIRF 277


>gi|153831155|ref|ZP_01983822.1| exodeoxyribonuclease IX [Vibrio cholerae 623-39]
 gi|148873359|gb|EDL71494.1| exodeoxyribonuclease IX [Vibrio cholerae 623-39]
          Length = 283

 Score =  215 bits (548), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 257 KQVSALKTDIELGFNLQDIRF 277


>gi|262364150|gb|ACY60707.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 159

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/159 (42%), Positives = 95/159 (59%), Gaps = 5/159 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLLLVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK 162
               AEK G +V I + DKD+ QLV+P   L +T+    
Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTI 159


>gi|308050518|ref|YP_003914084.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Ferrimonas balearica DSM 9799]
 gi|307632708|gb|ADN77010.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Ferrimonas balearica DSM 9799]
          Length = 255

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 86/270 (31%), Positives = 133/270 (49%), Gaps = 23/270 (8%)

Query: 4   ENHLFLVDGSSFIYRAFYATP-----LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +  L LVDG + + R   A P      L R+  G            + K L+  +     
Sbjct: 2   KPKLLLVDGLNLVRRIHAAVPNEDAEDLKRRCLG-----------AMDKALRQHK----P 46

Query: 59  SHFAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           SH  +++D      +R ++YP+YKA+R  +PE L   LPL+     + G+ ++  Q  EA
Sbjct: 47  SHAILVWDGGHDNSWRRQLYPEYKAHRKPMPEDLARALPLLDTGFASLGVRSVRQQDLEA 106

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177
           DD+IAT        G  V I+STDK   QL+ P    +D      ID E + +K G+P  
Sbjct: 107 DDLIATIASKVSAAGGEVVILSTDKGFGQLLGPGIAQWDHFDGHWIDAELLQQKVGVPQS 166

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           +++   AL GDS + IPGIPGIG KTA  L+ ++ +L+ +   A  +   K  E +  + 
Sbjct: 167 RLLDYWALAGDSGNGIPGIPGIGKKTALELVSQFDSLKALFA-ADAVPG-KLGERLQAHQ 224

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           + ARLS +LV LR D+ + + L    +   
Sbjct: 225 DEARLSYRLVQLRRDLELKLNLSQFRVGSP 254


>gi|296269792|ref|YP_003652424.1| 5'-3' exonuclease [Thermobispora bispora DSM 43833]
 gi|296092579|gb|ADG88531.1| 5'-3' exonuclease [Thermobispora bispora DSM 43833]
          Length = 314

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 110/235 (46%), Gaps = 19/235 (8%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           Q E  L L+D  S  +RAF+  P      DG PVNA+ G  +M+  L++      IA+  
Sbjct: 10  QNERVLMLLDTPSLYFRAFHGVPESVTAPDGTPVNAVRGLIDMITTLVRRRSPAGIAACM 69

Query: 62  AVIFDYPAVTFRNEIYPDYKANR-------PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
              +      FR  + P YKA+R        ++PE L  QLP++     A GI  I + G
Sbjct: 70  DADW---RPAFRVAVLPAYKAHRVAADGVTEQVPEALTAQLPVIEQVLDAVGIARIGVPG 126

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHV 168
           +EADD+I T    A      V I++ D+DL QLV       +  T +     + +D   +
Sbjct: 127 YEADDVIGTLAARATGA---VEIVTGDRDLFQLVDDAKPCRVLYTARGVRALQVVDEAFI 183

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
             ++GIP         L GD  D +PG+PGIG +TAA L+  +G L  +      
Sbjct: 184 TARYGIPGRSYADFALLRGDPSDGLPGVPGIGERTAAALISTFGTLSALRAALDE 238


>gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi]
          Length = 287

 Score =  214 bits (546), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 160/305 (52%), Gaps = 25/305 (8%)

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           + K+ S +   LP HINK+T ++HT ++   T +GR +S +PNLQ IP +    Q IR  
Sbjct: 1   MYKLYSAFYLKLPLHINKQTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----QNIREI 56

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI       I AD+ QIEL+I A I     + + + N++D+H + A+ I    I++++ +
Sbjct: 57  FIPSENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGIDEINKE 116

Query: 797 MRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            R  AK INF ++YG++   L         +++   +   +   +F  + G+  +    K
Sbjct: 117 DRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGLSRWHNSVK 176

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              R   Y  T+  R++ +             +   A+N P+QG+ ADI + A++ ++K+
Sbjct: 177 QT-RALEY-STLSNRKVVFPY----------FSFTKALNYPVQGTCADILKLALVELYKN 224

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           L    +  K++L +HDE++ EV ++    A +I+V SME +    +  +V  +V+ K++ 
Sbjct: 225 LR--HINGKIILCVHDEIIIEVDKKHQEEALKILVESMESSASFFLK-KVKCEVSAKIAQ 281

Query: 971 NWQEE 975
           NW ++
Sbjct: 282 NWGKK 286


>gi|119946402|ref|YP_944082.1| exonuclease IX [Psychromonas ingrahamii 37]
 gi|156630381|sp|A1SYB8|XNI_PSYIN RecName: Full=Protein Xni
 gi|119865006|gb|ABM04483.1| 5'-3' exonuclease [Psychromonas ingrahamii 37]
          Length = 262

 Score =  214 bits (546), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/264 (31%), Positives = 131/264 (49%), Gaps = 11/264 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAI---AGFCNMLWKLLQNSRKESIASHFA 62
            L ++D  + + R +    +  ++H   P   I   +   N L KLL+  +     +H  
Sbjct: 4   TLLIIDAMNLVRRIY---AVQQKQHGDTPTALIATQSTTTNALKKLLRIHQ----PTHAI 56

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD  A ++R++IYP+YK  R  IPE+L   LP ++      GI ++  +  EADD+IA
Sbjct: 57  CVFDSHAPSWRHQIYPEYKQGRKPIPELLKQGLPAIQEQFFDLGIDSLVTEEDEADDLIA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
                  K+     I+STDK   QL++ +  LYD  +   +  + V +K GI  +++   
Sbjct: 117 CLADKIAKQQQKCIIVSTDKGFYQLLNESIQLYDYFQNSFVIRQQVHQKMGISIQQLNDY 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            A+TG S   I G+ GIG K A  LLQ+YG+L NI   A      K    I      A L
Sbjct: 177 WAITGISSSAIKGVEGIGSKGALSLLQQYGSLNNIFQQAED-SNNKLLTKIKSQQSNAIL 235

Query: 243 SRKLVMLRTDVPITIPLEHLILED 266
           +++LV L+TD+ +   L+ L   D
Sbjct: 236 AKQLVTLKTDIKLGFNLKDLRYTD 259


>gi|255744688|ref|ZP_05418639.1| probable exodeoxyribonuclease IX [Vibrio cholera CIRS 101]
 gi|262161179|ref|ZP_06030290.1| probable exodeoxyribonuclease IX [Vibrio cholerae INDRE 91/1]
 gi|158962633|sp|Q9KTK4|XNI_VIBCH RecName: Full=Protein Xni
 gi|255737719|gb|EET93113.1| probable exodeoxyribonuclease IX [Vibrio cholera CIRS 101]
 gi|262028929|gb|EEY47582.1| probable exodeoxyribonuclease IX [Vibrio cholerae INDRE 91/1]
          Length = 259

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   +  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 233 KQVSALKTDIELGFNLQDIRF 253


>gi|229510833|ref|ZP_04400312.1| hypothetical protein VCE_002240 [Vibrio cholerae B33]
 gi|229517954|ref|ZP_04407398.1| hypothetical protein VCC_001978 [Vibrio cholerae RC9]
 gi|229608516|ref|YP_002879164.1| exonuclease IX [Vibrio cholerae MJ-1236]
 gi|229344669|gb|EEO09643.1| hypothetical protein VCC_001978 [Vibrio cholerae RC9]
 gi|229350798|gb|EEO15739.1| hypothetical protein VCE_002240 [Vibrio cholerae B33]
 gi|229371171|gb|ACQ61594.1| hypothetical protein VCD_003434 [Vibrio cholerae MJ-1236]
          Length = 261

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 6   HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 56

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   +  ++ A    GI ++  +G EADD++AT
Sbjct: 57  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 117 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 177 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 234

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 235 KQVSALKTDIELGFNLQDIRF 255


>gi|229505497|ref|ZP_04395007.1| hypothetical protein VCF_000705 [Vibrio cholerae BX 330286]
 gi|229513003|ref|ZP_04402469.1| hypothetical protein VCB_000648 [Vibrio cholerae TMA 21]
 gi|229523305|ref|ZP_04412712.1| hypothetical protein VIF_000163 [Vibrio cholerae TM 11079-80]
 gi|229530000|ref|ZP_04419390.1| hypothetical protein VCG_003106 [Vibrio cholerae 12129(1)]
 gi|229333774|gb|EEN99260.1| hypothetical protein VCG_003106 [Vibrio cholerae 12129(1)]
 gi|229339668|gb|EEO04683.1| hypothetical protein VIF_000163 [Vibrio cholerae TM 11079-80]
 gi|229349896|gb|EEO14850.1| hypothetical protein VCB_000648 [Vibrio cholerae TMA 21]
 gi|229357720|gb|EEO22637.1| hypothetical protein VCF_000705 [Vibrio cholerae BX 330286]
          Length = 261

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 6   HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 56

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 57  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 116

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 117 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 177 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 234

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 235 KQVSALKTDIELGFNLQDIRF 255


>gi|262191485|ref|ZP_06049670.1| probable exodeoxyribonuclease IX [Vibrio cholerae CT 5369-93]
 gi|262032633|gb|EEY51186.1| probable exodeoxyribonuclease IX [Vibrio cholerae CT 5369-93]
 gi|327483634|gb|AEA78041.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 259

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 233 KQVSALKTDIELGFNLQDIRF 253


>gi|312964931|ref|ZP_07779171.1| putative exonuclease [Escherichia coli 2362-75]
 gi|312290487|gb|EFR18367.1| putative exonuclease [Escherichia coli 2362-75]
          Length = 214

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 115/209 (55%), Gaps = 3/209 (1%)

Query: 58  ASHFAVIFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
            +H   +FD    +  +R++  PDYKA RP +PE L  ++P +R A +  G+P     G 
Sbjct: 5   PTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSASGN 64

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
           EADD+ AT      + G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ 
Sbjct: 65  EADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQ 124

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P+++     L G S   +PG+ GIG K+A  LL E+ +LE I  N + + +K  R+ +  
Sbjct: 125 PQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFKSLEGIYENLNAVAEKW-RKKLET 183

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLIL 264
           + E A L R +  L+TD+ I   L+ L L
Sbjct: 184 HKEMAFLCRDIARLQTDLHIDGNLQQLRL 212


>gi|282599434|ref|YP_003358324.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
 gi|259048533|emb|CAZ66183.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
          Length = 875

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 127/696 (18%), Positives = 260/696 (37%), Gaps = 102/696 (14%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + + +Y         ++ + KL      +  I   ++  F S    I  +       
Sbjct: 160 EDLLRDVTYVYRDEVAKAKEQLSKLLDKPELTCDIEAFSLSMFDSGIATIGFAWSQH--- 216

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--- 476
            + +++  + +++  +     G     + +   L+ FFE      I H   +D  VL   
Sbjct: 217 DAVQIQVDYQEMAEPSG-GLYGYCETNEPMRDVLRWFFEQYKGQLIYHKANFDVKVLIYQ 275

Query: 477 -------------HRYGISMRGFEDIMLMSYV-LDSGRS-SHDIASIAQKWLSYTRKEIL 521
                            I  RG +D  +++Y+ L+S  S S+ +  + Q+      +   
Sbjct: 276 LYMAHDLDKVGMLRGLEIMCRGMQDTKVVAYLALNSTSSPSYSLKDLGQEHAGDWSQ--- 332

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
                   I KI   Q+ E+   ++   + +W    P ++ EK   +Y  L     +++ 
Sbjct: 333 --GDDIKDIRKIPLDQLMEYNAVDAVTTMYVWNKYYPVMVAEKQDQLYHGLFMESQEMII 390

Query: 582 QMEITGIQIDQDLLKQVSAEISK--------------------------------NLLSL 609
             E+ G+ +    L +V  E++K                                 L ++
Sbjct: 391 HTELVGMPMCPKRLAEVETELTKLRDGYFNTIMQDPMVHRTTLLLREEAMVKKNATLKTI 450

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP--- 666
           ++ I D S  +FN  S  Q   +L   +  P   KT TGQ  T   +L ++    +P   
Sbjct: 451 QKTIDDFSHIEFNPGSGPQKALLLHKVIGLPVLDKTPTGQPATGGDELTKLIR--HPAGA 508

Query: 667 ----IIKNILEWRQLSKIKSTYADSLP--NHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +++ +++  ++ KI S +  +             +H  ++L  T++GRL+S +PN+
Sbjct: 509 SFKGLLQAMIDLDRVQKILSAFIPAFKAGRLKADGMLYLHGSFNLGGTISGRLSSSDPNM 568

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
           QN+P  +  G+ I+  F++        AD++ +E RI A + +     +V+ +  D H M
Sbjct: 569 QNLPSGSAYGKLIKSIFMAAKGYLFGGADFAALEDRINALLTRDPNKIKVYTDGYDGHSM 628

Query: 781 ---------------VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
                            + I   +I+ + P +R  AK  +F + YG S   L   +    
Sbjct: 629 RTFAFWPEKCIGIVDTVSSIN--SIQHIYPGLRGEAKAPHFLLQYGGSWMGLVKNVGFAE 686

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            EA      Y   +    +++        + GYV+  FG ++    + +   +++   ++
Sbjct: 687 DEAKRIEDNYHKLYSVSADWVATEIQKATKQGYVQLAFGLKLRTPLLGNTMLNLKVTPKQ 746

Query: 886 AAINAPIQGSAAD------ITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVP--EE 935
           AA  +   G+A        +  RA ++  K +   K      ++  IHD +    P   E
Sbjct: 747 AAAESRSAGNAVSGQSWGLLNNRAAVAFRKRVLASKWREEVHIVALIHDAIYVLFPDDPE 806

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
            +   +  +   M     P I         +K+  N
Sbjct: 807 CVAWVNNALCEEMAWQEDPAIAHD-----QVKIGAN 837


>gi|152996893|ref|YP_001341728.1| 5'-3' exonuclease [Marinomonas sp. MWYL1]
 gi|150837817|gb|ABR71793.1| 5'-3' exonuclease [Marinomonas sp. MWYL1]
          Length = 263

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 121/263 (46%), Gaps = 9/263 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  L ++DG + I R + A               +IA     L KL          S+  
Sbjct: 2   DKKLLIIDGLNLIRRLYAALESEQDSTRRIERTQSIA--IEALAKLTHQF----TPSYAV 55

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V+FD    T+R+ +YP+YK  R  + + LL  LP      +   +P + I G+EADD+IA
Sbjct: 56  VVFDSNGKTWRHRVYPEYKLGRVPMDDTLLESLPDFAKVFRFNHLPCLRIDGWEADDLIA 115

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T    A        I+STDK   QL+ +     YD   +   D   V  K+G+ PE++  
Sbjct: 116 TLAVKAANSNVKSYIVSTDKGFTQLLGNDRILQYDYFAKLGYDKIWVPGKYGVEPEQLTD 175

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD+ + IPG+ GIG KTA  ++  +  +E I  N     + + +  +    E   
Sbjct: 176 YWALVGDTTNRIPGVKGIGPKTALSIISLFPTVEEIYANLPSFSE-RIQSMLAGGYEQCL 234

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           LSR LV L+TDV I + L  L  
Sbjct: 235 LSRSLVALKTDVEIGVRLSQLRY 257


>gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1]
 gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1]
          Length = 608

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 121/531 (22%), Positives = 228/531 (42%), Gaps = 57/531 (10%)

Query: 465 IGHNIKYDKLVLHR-YGISMR----GFEDIMLMSYVLDS-----GRSSHDIASIAQKWLS 514
           + HN  +D  V+ R  G+ M       ED  + S+++D      G + H +  + + ++ 
Sbjct: 93  VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEELTKFYID 152

Query: 515 YTRKEILKS------RKSSIPIDKI------SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
               E +K+      +K     DKI       D   + +A  +   IL   LL +   +V
Sbjct: 153 PVTAEEVKASMARLAKKHKTTKDKIWALVDLDDPDYELYAGMD--TILVSRLLGKVAPLV 210

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            +  H     +  + +V+S +E TG  +D D  +++SA++ +            +    +
Sbjct: 211 PEPSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR-YAYGVDS 269

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++S ++L D L  +       +T TG+ +  A+ LE +    N + K  +E ++    + 
Sbjct: 270 VNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIEAKKWGSWEK 328

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           T+  +     +    RVH   +     T R+++  P+ QN+P        +RR F++ P 
Sbjct: 329 TWVRNFIERRDA-NDRVHPGINPLQARTARMSTNNPSAQNLPAGD---WMVRRCFLADPG 384

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           + ++S DY   ELR+LA +A    + Q F+++ D+H++ A           S   R+  K
Sbjct: 385 QLMVSVDYQAQELRVLAALANDRTMIQAFKDNADLHQITA---------DASGVDRKVGK 435

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +NF+ ++G  P  +A Q  I   EA   I  +   +P +    +  +      GYV T 
Sbjct: 436 MVNFAYVFGSGPSTIAAQAGITFPEAKRVIAGFEQSYPEVTALSKSLQREAANLGYVITP 495

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
            GRR+  D               AA+N  +Q ++ D+T  A++ +H    +  +   + L
Sbjct: 496 TGRRLPVDPDR----------GYAALNYMVQSTSRDVTASAVLRLH----EAGMTPMIRL 541

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
            IHDE++  VPE E    ++ I   ME+     +    P    +    +W 
Sbjct: 542 VIHDEVLASVPEAEAEATAKEIGRIMEQTFRGVLINTDP---EVG-GRSWG 588


>gi|94499173|ref|ZP_01305711.1| exonuclease IX [Oceanobacter sp. RED65]
 gi|94428805|gb|EAT13777.1| exonuclease IX [Oceanobacter sp. RED65]
          Length = 263

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 87/258 (33%), Positives = 139/258 (53%), Gaps = 9/258 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L D  + I R +        K DG+  N +    N + K +++ R     SH A +FD
Sbjct: 3   VLLFDAMNLIRRIYATQQD---KPDGVE-NTLLLSQNAMLKDIEHFR----PSHVACVFD 54

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             + T+R+ IYP YKANR  +P+ L   LP      +  GI  +     EADD+IAT   
Sbjct: 55  GHSKTWRHTIYPAYKANRNPMPKDLSAALPEFHRRFEQIGIRCLLYDYLEADDVIATLAV 114

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            +++ G +V I+STDK  MQ++   T LY     ++++++ V    G  P ++V   +L 
Sbjct: 115 KSQQRGKSVCIVSTDKGYMQIMDEQTSLYHHFDRKQLNLDDVRSILGFEPSQLVDFLSLV 174

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS + +PG+ GIG KTA  LL ++G+L++ILI++  I  K  R+ +  +   A  +RK+
Sbjct: 175 GDSTNEVPGVDGIGQKTAGKLLDQFGDLDSILIHSDEISGKVGRQ-LENHFRIALRARKM 233

Query: 247 VMLRTDVPITIPLEHLIL 264
           V L+TD  + I L+ L  
Sbjct: 234 VTLKTDCELAINLKGLRY 251


>gi|9964623|ref|NP_064753.1| RP DNA pol [Roseobacter phage SIO1]
 gi|9944314|gb|AAG02598.1|AF189021_17 RP DNA pol [Roseobacter phage SIO1]
          Length = 580

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 117/577 (20%), Positives = 220/577 (38%), Gaps = 95/577 (16%)

Query: 457 FENEHFLKIGHN-IKYDK---LVLHRYGISMRGFEDIMLMSYVLDSGR-SSHDIASIAQK 511
              +  L IGHN I +D      L  YGI ++   D ++MS +LD  R   H + +++  
Sbjct: 42  LAKQVTLWIGHNVIGFDIPQIKKLWGYGIPLKDVADTLVMSRLLDPTRKGGHSLDALS-- 99

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
                      + K           ++  +  ++  +  +++L L+ +L       +  +
Sbjct: 100 ----------GNEKIDFHDFSTYTPEMLAYCKQDVAINEKVYLQLKEELSNFGKASI--Q 147

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD---------------- 615
           L+  M  +V + E  G  +D D+ +++     +    +E  I +                
Sbjct: 148 LEHQMQAIVCEQEKNGFMLDTDIAEEIYTTCLRETNRIEAEIKEFMVPIAVPVKEVIIKR 207

Query: 616 -----------------------LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG-QWK 651
                                  ++ E+FNL SP Q+   L  +L +    KTK+G  +K
Sbjct: 208 KKDGSIYSNQLLEGCNVQGDYTKIAWEEFNLGSPAQVNKRL-DRLGWKPTVKTKSGNSYK 266

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
              ++L  I       +K +  W+ L        + L    ++ T RVH    L   +T 
Sbjct: 267 ICPENLATIPDTAPEAVKGLKAWKVLETRWKLAQEWLQK--SQETGRVHGRVILTGAVTH 324

Query: 712 RLASLEPNLQNIPI------------KTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           R A   PN+ NIP             +   G + R+AF  P  K L+  D + I+LR+LA
Sbjct: 325 RAAHQGPNMANIPSVPHGKDGILWKMEGMYGAECRQAFKVPEGKLLVGTDAAGIQLRVLA 384

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H        +   +  DIH       F         + R  AKT  ++ + G     +A+
Sbjct: 385 HYMNDPIYTEQVIDG-DIHT------FNKEALGRYCKDRPTAKTFIYAFLLGAGTGMIAS 437

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            L     +A + +  ++   P + + ++   +     G+++ + GR             +
Sbjct: 438 ILGCNNRQANEAMANFYEAIPSLKK-LKSQASQAASMGWMKGLDGR------------VL 484

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           R  ++  A++  +QG    I R A +   +  +   +  K    +HDE   EV E++   
Sbjct: 485 RIGSDHLALSVYLQGGETVIMRLANVFWQRQAKKEGINFKQCAWVHDEWQTEVDEDQAQR 544

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             +I V +++ A      L  P+    K+  NW E +
Sbjct: 545 LGEIQVQAIKDAGT-FFKLNCPMDGEAKIGKNWLETH 580


>gi|153823732|ref|ZP_01976399.1| exodeoxyribonuclease IX [Vibrio cholerae B33]
 gi|126518747|gb|EAZ75970.1| exodeoxyribonuclease IX [Vibrio cholerae B33]
          Length = 254

 Score =  214 bits (544), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   +  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ + L
Sbjct: 233 KQVSALKTDIELGFNLQDIRL 253


>gi|62327214|ref|YP_223952.1| DNA polymerase [Phage phiJL001]
 gi|50059532|gb|AAT69504.1| DNA polymerase [Phage phiJL001]
          Length = 631

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 116/642 (18%), Positives = 235/642 (36%), Gaps = 96/642 (14%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +F + T     +         S         +              +   G N    ++
Sbjct: 29  VAFDLET-----YDPHLKDTGPSVRTGGHIAGYGFAIDGGPKHYLPVRHENGDNLDAAQV 83

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM---RGFEDIMLMSYVLDSGRSSHDIA 506
           L Y+K  F+      +G N+ YD       GI M   + + D+++    ++  +  + + 
Sbjct: 84  LRYIKDQFKTFDGELVGANLGYDLDWAWAEGIDMPLVKAYRDVLIAEPCINENKFFYSLD 143

Query: 507 SIAQKWLSYTRKEIL-----------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           S+A  WL   + + L           K  +    I  +    V  +  ++  + L++  L
Sbjct: 144 SVAGDWLGEQKSKTLMIEAARAYGMRKDSELGSYIHLLPARYVGVYGEDDCALPLRILEL 203

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
              ++  + +  V   L+  ++ V+ +M   G+++D+D L +V    +K      + I  
Sbjct: 204 QEKEIEQQGIQAV-WDLESKVLPVLVRMRQRGVKVDEDRLMEVEIRATKERRDASDLITR 262

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDNPIIKNILE 673
           ++G            D +   +   +            A D   I    G   +   +  
Sbjct: 263 VTGVAVGPE------DAMKKGILVDALRAAGHQLNADDAVDKHFIARHEGHCEVTAALGR 316

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS-----------TMTGRLASLEPNLQN 722
            R+   ++    D + NH+     R+H  ++  +              GRL+    N+Q 
Sbjct: 317 LRKWDTLRKLAIDPVKNHMV--NGRIHCSFNQMAADKDNGKGTKGARYGRLSCEHVNMQQ 374

Query: 723 IPIKTDLGQKIR-RAFISPPTKKLISADYSQIELRILAHIAKITPLYQV------FENSL 775
            P + +    I  R +         + DYSQ E R+L H A+I  +         + +  
Sbjct: 375 QPSRDEDIAPIWRRIYRPDDGGLWAALDYSQQEPRMLVHFAEICGMPGASEAAQKYRDDP 434

Query: 776 DI--HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS------- 826
           D   H+M+A          ++   R+ AK I   + YG+   +L   L++P         
Sbjct: 435 DTDNHQMMA---------DMAGISRKEAKIIFLGLCYGMGQEKLCHDLQLPTKIIELKKG 485

Query: 827 ------------EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
                       E A   + +  + P + +     K+   + G++ T+ GRR  +   + 
Sbjct: 486 PRKGQKMVVAGDEGARLFETFHAKVPFVKQMENLCKDRATERGFITTLLGRRCRFKMGDD 545

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP- 933
               +       A+N  IQGS+AD T+ AM++  ++        ++ LQ+HDE+   V  
Sbjct: 546 ---GLNYWGTHKALNRLIQGSSADQTKAAMVAADEA------GYELQLQVHDEIDLTVES 596

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            E+    ++I+           + + VP KV+++V  +W E 
Sbjct: 597 REQAEKIAEIMRTC--------VEINVPSKVDVEVGVSWGEA 630


>gi|310825374|ref|YP_003957732.1| 5'-3' exonuclease family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398446|gb|ADO75905.1| 5'-3' exonuclease family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 296

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDG+  ++RA ++        DG  V A  G  + L  LL +  K    +H AV F
Sbjct: 2   RLHLVDGTYELFRAHFSPRPGHSAPDGQDVKATVGLMSSLLALLHD--KAEAVTHLAVAF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  +FRN ++  YK++   +P  L  Q  L   A +A G+ A  ++  EADD +AT  
Sbjct: 60  DNPIRSFRNTLFAGYKSD-EGVPPELHAQFDLAEEAVRALGVTAWSMKDHEADDALATAA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                +   V +++ DKDL Q V        D  +E+++D E V  K G+PP  +  L A
Sbjct: 119 ARWAAQVEQVRLLTPDKDLGQCVRGRHVVQVDRRQEKELDEEAVRAKLGVPPASVPDLLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRENILEYAET 239
           L GD  D IPG+ G G K AA LL  YG+LE I   A+  K      ++    + E+ E 
Sbjct: 179 LVGDEADGIPGLTGFGEKGAATLLTAYGHLEAIPAEAADWKVRPRGAERLAATLREHREE 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           A L R+L  L TD P+   L  L  +        +    L  T L +R
Sbjct: 239 ALLYRRLATLVTDAPLKESLAALAWKGVPRGPFEALCNRLGVTSLKSR 286


>gi|229525513|ref|ZP_04414918.1| hypothetical protein VCA_003143 [Vibrio cholerae bv. albensis
           VL426]
 gi|229339094|gb|EEO04111.1| hypothetical protein VCA_003143 [Vibrio cholerae bv. albensis
           VL426]
          Length = 292

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 13/258 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 37  HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 87

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 88  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 147

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 148 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 207

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  +   AR+ 
Sbjct: 208 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIAMARIC 265

Query: 244 RKLVMLRTDVPITIPLEH 261
           +++  L+TD+ +   L+ 
Sbjct: 266 KQVSALKTDIELGFNLQD 283


>gi|89902244|ref|YP_524715.1| 5'-3' exonuclease [Rhodoferax ferrireducens T118]
 gi|89346981|gb|ABD71184.1| 5'-3' exonuclease [Rhodoferax ferrireducens T118]
          Length = 270

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 85/259 (32%), Positives = 135/259 (52%), Gaps = 12/259 (4%)

Query: 7   LFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L ++D  + I R   A   P    K      +++  F   L        K    +H   +
Sbjct: 3   LLIIDALNIIRRIHEAIAEPDSEEKVADTIKSSLGSFKRAL--------KTHRPTHAVAV 54

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   T+++++Y  Y+ANR  +P+ L   L  ++      G+  I I+G EADD IA  
Sbjct: 55  FDHGGRTWKHDLYDGYQANRKPMPQPLRDGLLTLKRELHDMGLHWIAIEGIEADDAIAAL 114

Query: 125 TYIAEK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                K       I+STDKD +QL++   C+YD  KE   D  +V +K+G+ P +M  L 
Sbjct: 115 VEKWCKYSAKQAIILSTDKDFLQLLNDQVCIYDHFKEVWRDSAYVQEKFGVTPSQMGDLL 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD++D +PG+  +G KTAA LL+  GNL+ ++ NA ++   +   N+ +  E ARLS
Sbjct: 175 ALMGDAVDGVPGVDKVGRKTAATLLRINGNLDRLISNADKV-GGQVGANLRKGIEIARLS 233

Query: 244 RKLVMLRTDVPITIPLEHL 262
           R+LV  +TD P+ +  + L
Sbjct: 234 RQLVSFKTDRPLGLTWKML 252


>gi|303285890|ref|XP_003062235.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456646|gb|EEH53947.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 565

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 105/380 (27%), Positives = 153/380 (40%), Gaps = 104/380 (27%)

Query: 5   NHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
            H+ LVDG S ++RAFY      PLL+    G  ++ +    + +  +L     E   SH
Sbjct: 166 GHVALVDGMSLVFRAFYGWRNREPLLATN--GEDLSVMYSVTHAILAIL-----ELAPSH 218

Query: 61  FAVIFDYPAVTFR--------------NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
            AV FD    TFR              +E++ DYKANRP  P  L  Q+P V  A +  G
Sbjct: 219 VAVCFDAKGKTFRRVLYTGSHTTPSAWHEMFTDYKANRPPTPPELKEQIPKVVEAVRRMG 278

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---- 162
           +P + I G EADDII T    + + G  VTI+S DKD  QL+ P         +      
Sbjct: 279 VPVLTISGVEADDIIGTIARRSVEAGLHVTIVSPDKDFFQLLGPRVRQLRPNGKNYDAAK 338

Query: 163 ------------------------------IDIEHVIKKW-GIPPEKMVCLQALTGDSID 191
                                                 ++  + P + V + A+ GD+ D
Sbjct: 339 EAAARDGEDAASDGFGDPTHRNVTGKGLVPFTERDFRAEFSDLDPAQFVDVLAMVGDASD 398

Query: 192 N------------------------------IPGIPGIGYKTAALLLQEYGNLENILINA 221
           N                              +PG+ GIG KTA  LL EYGN+E  + NA
Sbjct: 399 NVPGAVPRFQSRHTSTPFNSASDAFQLHPDIVPGVEGIGPKTAPKLLSEYGNIEGAIANA 458

Query: 222 SRIKQKKRRENI--LEYAETARLSRKLVMLRTDVPIT------IPLEHLILED--CNGP- 270
             IK K+ RE++     A +A L R LV +RT + +       +P+  L + D   N   
Sbjct: 459 GGIKNKRARESLASERGAASAYLCRSLVKIRTRLSVPTLNDPALPIADLAIADKVPNPAD 518

Query: 271 ---RLISFLKALEFTKLINR 287
               +  +  A+E   + +R
Sbjct: 519 GGLAVSDYFDAMELGTVASR 538


>gi|317487299|ref|ZP_07946094.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
 gi|316921489|gb|EFV42780.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
          Length = 626

 Score =  212 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 123/654 (18%), Positives = 228/654 (34%), Gaps = 112/654 (17%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
              +  F I TD +    S      I   D     SF              +D  G    
Sbjct: 22  ETPALLFDIETDGLLDETSTI--HCICAKDFLTGESFS-------FGPGEIEDGLGLLCQ 72

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSG------ 499
           ++ ++++    F+     K+     +  L+L R         D +  S ++ +       
Sbjct: 73  SRLLVAHNGLCFDIPAIQKL-----HPSLLLPRL-------FDTLTASRLIWTNLKDLDF 120

Query: 500 --------------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
                           SH + +  Q+ L   + +  K+ +++          +Q +  ++
Sbjct: 121 TQLRKKSCRFPPKLAGSHSLDAWGQR-LGVMKGDYGKTTENAWSRWS---EDMQRYCEQD 176

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             V+  L+  +  +    + L +    +     V+   E TG+  D+   + + AE++  
Sbjct: 177 VEVLEALYRHILDQRYSPEALAL----EHEFQAVIFHQERTGVWFDERAAQSLYAELAAK 232

Query: 606 LLSLEENIYDLS------------------------------GEKFNLSSPKQLGDILFT 635
                  + ++                                E FN +S +Q+ D L  
Sbjct: 233 RNDAVTALQEVFPQKRIEEIFIPKANNRTRGYVKGVPFTKVRYETFNPASRQQIADRLME 292

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS---LPNHI 692
           K  +     T TGQ K     L  +     P  K ++++ +L KI    A+        +
Sbjct: 293 KHGWKPSEFTDTGQPKVDEDVLASLPF---PECKPLVDYLELLKIIGMLAEGKNGWLKLV 349

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
                R+H        +TGR     PNL  IP +   G++ R  F +PP    + AD S 
Sbjct: 350 GPDG-RIHGRVITNGAVTGRCTHNSPNLAQIPARGQYGKQCRALFAAPPPLVQVGADASG 408

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +ELR+LAH          ++       ++  +I   N      + R +AKT  ++ +YG 
Sbjct: 409 LELRMLAHY------LAAYDGGAYAKVLLEGDIHTANQHAAGLETRDNAKTFIYAFLYGA 462

Query: 813 SPFRLATQL------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
              +L + +       +          R+F   P I   I+  +        V T  G+R
Sbjct: 463 GDEKLGSIVAPLASSAVQTKRGRALKDRFFRSLPAIKRLIDDVQ-------GVLTGPGKR 515

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA----TKMLL 922
            +   I+     IR+    +A+N  +Q + A + + A +  H   +   L        +L
Sbjct: 516 PYLIGIDGRHLHIRS--SHSALNTLLQSAGAVLMKLATVIFHMEAQRRGLRLGEDYAQVL 573

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            +HDE  F    E+     ++ V S+E A      +R P     KV  NW E +
Sbjct: 574 HVHDEAQFNTTPEKADALGKLFVESIELAGR-HFGMRCPTTGEYKVGANWAETH 626


>gi|284008530|emb|CBA75061.1| exonuclease IX [Arsenophonus nasoniae]
          Length = 251

 Score =  212 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 30/270 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG------FCNMLWKLLQNSRKESIAS 59
           HL +VD  + I R                  A+ G          L +L+ ++    + +
Sbjct: 3   HLLIVDALNLIRRIH----------------AVQGSPCEQACVLTLRQLINHT----LPT 42

Query: 60  HFAVIFDYPAV---TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
           H   IFD        +R ++ P YKA R  +P+ L  ++  + +A +A G+        E
Sbjct: 43  HAVAIFDSKEQLTNNWRQQLLPQYKAGRQAMPDDLYQEINNLEIAFKAQGLACWHAIENE 102

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176
           ADD+ AT        G+ VTIISTDK   QL+S +  + D  ++  +D+  V K++G+ P
Sbjct: 103 ADDLAATLAIKVATAGYRVTIISTDKGYCQLLSSSIYIRDYFQKRWLDLSFVNKEFGVKP 162

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E++     LTG +   IPGI GIG KTAA LLQ+Y  LE I  N + I +K  R+ I   
Sbjct: 163 EQLQDYWGLTGINSSKIPGITGIGPKTAATLLQQYPTLEAIFANINSIPEKW-RKRIEPG 221

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILED 266
            + A +SR++  L+TD+ +   L+ L    
Sbjct: 222 QKIAFISRQVASLKTDLQLNGNLQQLRFMP 251


>gi|197335724|ref|YP_002155351.1| hypothetical protein VFMJ11_0608 [Vibrio fischeri MJ11]
 gi|226733942|sp|B5FAT7|XNI_VIBFM RecName: Full=Protein Xni
 gi|197317214|gb|ACH66661.1| conserved hypothetical protein [Vibrio fischeri MJ11]
          Length = 262

 Score =  212 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 124/262 (47%), Gaps = 13/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P             I        + +    KE+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPNQDD---------IQAVITTTTRTINKILKETEPTHIIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P YK +R  +PE L   +  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQDRGWRAEILPQYKEDRKPMPEALQKGMDDIQEAWWKLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   V K++G+ PE++    
Sbjct: 115 LANKVAVHNEQVTIISTDKGYCQLLSPTLRIRDYFQHRWLDAPFVEKEFGLKPEQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   I GIPG+G K A  +L ++  +E    N S    KK R+   E+ ETA L 
Sbjct: 175 GLAGISSSKITGIPGVGPKAALEILTQFPTIEA--ANESEDLPKKYRKKFDEHYETAILC 232

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  LRTD+ +   L+ +  E
Sbjct: 233 RQVAGLRTDIELGFNLQDIRYE 254


>gi|313233190|emb|CBY24305.1| unnamed protein product [Oikopleura dioica]
          Length = 1902

 Score =  212 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 99/434 (22%), Positives = 177/434 (40%), Gaps = 29/434 (6%)

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            V+ + +L ++  L    L + +   +    +++ QM   G+   +   ++    +S  + 
Sbjct: 1487 VLRRCYLGVKKILEDRNLENKFIA-EMEHAEIIFQMSENGMPFSESASEKTIKSLSTLMD 1545

Query: 608  SLEENIYDLS--GEK---FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
             L   +   +  G K    N +        ++  LK        +        ++ +   
Sbjct: 1546 RLAIKMKKHAPKGMKRDSLNFNHLLDQRKYVYDFLKCQPLEGKVSLSVSKEVLEVLEEKE 1605

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
               P I+N++E+R+  K  S     L  + N           +    TGR++   P+LQ 
Sbjct: 1606 ---PRIRNLIEFRRAQKAFS----DLLTYKNASRDDRIYSTPVLINRTGRISMDNPSLQM 1658

Query: 723  IPIKTDLGQKI---RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            +  + +   KI   R  F + P K  IS DY Q+ELR+LA ++    L   F +  D   
Sbjct: 1659 VQNEFECCGKIIKVRNCFRANPKKIFISVDYRQLELRVLALLSGDEGLQASFIDHEDPFV 1718

Query: 780  MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
             +  +        V    R   K + + +IYG+    L+T L +   EA +    +   +
Sbjct: 1719 SIGRKWLKRERISV--AQRTQVKGLVYGVIYGMGNKTLSTTLGVSIEEAKNISSEFMSSY 1776

Query: 840  PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            PG+ +++         N Y ET+ GRR  +D   S          R A+N  IQGSAADI
Sbjct: 1777 PGMQKFLVDVDKSASSNLYTETLIGRRRSFDNYTSR-------AARVAVNTKIQGSAADI 1829

Query: 900  TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
             +   +   + +++  +  K++LQIHDEL+FEV E +      I+     K    +    
Sbjct: 1830 VKIGTVRAARKIKETGINAKLVLQIHDELLFEVEESQKGLLEDILK----KVLPLENEYA 1885

Query: 960  VPLKVNIKVSNNWQ 973
            V   V +K   +W 
Sbjct: 1886 VRFDVKVKKGLSWD 1899


>gi|59711201|ref|YP_203977.1| exonuclease IX [Vibrio fischeri ES114]
 gi|75354474|sp|Q5E7A7|XNI_VIBF1 RecName: Full=Protein Xni
 gi|59479302|gb|AAW85089.1| exonuclease IX (5'-3' exonuclease) [Vibrio fischeri ES114]
          Length = 259

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 124/262 (47%), Gaps = 13/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P             I        + +    KE+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPNQDD---------IQAVITTTTRTINKILKETEPTHIIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P YK +R  +PE L   +  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQDRGWRAEILPQYKEDRKPMPEALQKGMDDIQEAWWKLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   V K++G+ PE++    
Sbjct: 115 LANKVAMHNEQVTIISTDKGYCQLLSPTLRIRDYFQHRWLDAPFVEKEFGLKPEQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   I GIPG+G K A  +L ++  +E    N S    KK R+   E+ ETA L 
Sbjct: 175 GLAGISSSKITGIPGVGPKAALEILTQFPTIEA--ANESEDLPKKYRKKFDEHYETAILC 232

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           R++  LRTD+ +   L+ +  E
Sbjct: 233 RQVAGLRTDIELGFNLQDIRYE 254


>gi|147674734|ref|YP_001216375.1| exonuclease IX [Vibrio cholerae O395]
 gi|146316617|gb|ABQ21156.1| exodeoxyribonuclease IX [Vibrio cholerae O395]
 gi|227012717|gb|ACP08927.1| exodeoxyribonuclease IX [Vibrio cholerae O395]
          Length = 283

 Score =  212 bits (540), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A             N I        + LQ    E++ SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQTDP---------NDITRTAETTTRTLQRIINEALPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 257 KQVSALKTDIELGFNLQDIRF 277


>gi|119960593|ref|YP_947778.1| 5'-3' exonuclease [Arthrobacter aurescens TC1]
 gi|119947452|gb|ABM06363.1| putative 5'-3' exonuclease [Arthrobacter aurescens TC1]
          Length = 316

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 128/278 (46%), Gaps = 29/278 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RAFY  P   R+ DG PVNA+ G  +M+ +L      +  A+H    
Sbjct: 7   PRLMLLDTASLYFRAFYGVPDSIRRPDGTPVNAVRGLMDMIARLTT----DYEATHLVAC 62

Query: 65  FDYP-AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           +D      +R ++ P YK++R             +P+ L  Q+P++R      GI  + +
Sbjct: 63  WDNDWRPQWRVDLIPSYKSHRVAEIVPNGPDVEVVPDPLEAQIPMIRRVLDLAGIAVVGV 122

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIE 166
              EADD++ TY   A        +++ D+DL QLV                  E +   
Sbjct: 123 DDHEADDVVGTYASQA---HIPTDVVTGDRDLFQLVDDDREVRIIYTARGMKNLEVVTDV 179

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V+ K+ + P++      L GD+ D +PG+ GIG KTAA LL E+G+LE +L  A     
Sbjct: 180 VVVGKYRVLPQQYADFATLRGDASDGLPGVAGIGEKTAASLLGEHGSLEGLLEAAEDPDG 239

Query: 227 K---KRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
                 R  +   A+  +++  +V +  D+ +   LE 
Sbjct: 240 GLSASIRAKLSAAADYLKVAPAVVNVVRDLKVP-TLEQ 276


>gi|294498772|ref|YP_003562472.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294348709|gb|ADE69038.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 295

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 20/298 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL------LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
              L ++DG + + R ++AT        L+R   G   NA+      +  L+     +  
Sbjct: 2   NETLLVIDGFNLLSRCYFATSYGRDEAALTRNSKGQFTNALRVTIQKMHALIH----QYE 57

Query: 58  ASHFAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            SH  V +D     T R + Y  YK  R ++PE L+ Q   ++      GI  + +  +E
Sbjct: 58  PSHIFVAWDVKREDTKRKDTYALYKQTRAELPEPLIQQYETLKQFFDTVGIYQMSLSSYE 117

Query: 117 ADDIIATYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVK---EEKIDIEHVIKKW 172
           ADD+I        KE      I S D+DL+QL+          K   +     +H  +++
Sbjct: 118 ADDLIGALASKWSKEKQSPGYIYSNDRDLLQLLDQHISQIIAKKQVGDLVYGFKHFQEEY 177

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--KRR 230
            I P + V ++AL GD  DNIPG+PG+G K A  L+Q+YG++  I     ++     + +
Sbjct: 178 NIHPRQWVDVKALLGDKSDNIPGVPGVGEKAALPLIQQYGSIHEIYAQIEQLDPAFNRYK 237

Query: 231 ENILEYAETARLSRKLVMLRTDVPI--TIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           + ++E  E   LSR+L  +  D+     +  E L     +  R    +++LE    I 
Sbjct: 238 KKLVEGKELGMLSRELAEIIIDIQEISMLTWEKLTFM-YDYERWNKEIQSLELNIRIR 294


>gi|153827055|ref|ZP_01979722.1| exodeoxyribonuclease IX [Vibrio cholerae MZO-2]
 gi|149739096|gb|EDM53392.1| exodeoxyribonuclease IX [Vibrio cholerae MZO-2]
          Length = 283

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+       R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGRRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 257 KQVSALKTDIELGFNLQDIRF 277


>gi|297581282|ref|ZP_06943206.1| exodeoxyribonuclease IX [Vibrio cholerae RC385]
 gi|297534598|gb|EFH73435.1| exodeoxyribonuclease IX [Vibrio cholerae RC385]
          Length = 283

 Score =  211 bits (538), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 127/261 (48%), Gaps = 13/261 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N I        + LQ    E+  SH   +F
Sbjct: 28  HLVIIDALNLIRRVHSAQPDP---------NDITRTAETTTRTLQRIINEAQPSHMIAVF 78

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 79  DHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDAIQDAWWQLGIDSLLSEGDEADDLVAT 138

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 139 LACKVAAHKEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVNPAQLTDYW 198

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E AR+ 
Sbjct: 199 GLTGVSSSQIPGVAGIGQKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIEMARIC 256

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           +++  L+TD+ +   L+ +  
Sbjct: 257 KQVSALKTDIELGFNLQDIRF 277


>gi|262172090|ref|ZP_06039768.1| probable exodeoxyribonuclease IX [Vibrio mimicus MB-451]
 gi|261893166|gb|EEY39152.1| probable exodeoxyribonuclease IX [Vibrio mimicus MB-451]
          Length = 259

 Score =  211 bits (537), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 127/267 (47%), Gaps = 13/267 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQPDP---------NDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ N+E    +      +K R+ +    E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKEILTQFANIEEAYASPE--LPEKYRKKLEPQIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGP 270
           +++  L+TD+ +   L+ +     +  
Sbjct: 233 KQVSALKTDIELGFNLQDIRFNPPSAD 259


>gi|91793909|ref|YP_563560.1| exonuclease IX [Shewanella denitrificans OS217]
 gi|123356631|sp|Q12L39|XNI_SHEDO RecName: Full=Protein Xni
 gi|91715911|gb|ABE55837.1| 5'-3' exonuclease [Shewanella denitrificans OS217]
          Length = 252

 Score =  211 bits (537), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 83/261 (31%), Positives = 124/261 (47%), Gaps = 11/261 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L ++DG + + R   A P           N I     M         K    SH  V+
Sbjct: 2   NTLLIIDGLNLVRRIHAAQPDE---------NDINNVQQMTLLACTKMLKTHQPSHVIVV 52

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D    ++R ++Y DYK  R  +PE L   L  +R      GI ++E +  EADD+IAT 
Sbjct: 53  WDGDEESWRKKLYSDYKKGRKPMPEALKIALVGIRNTLSEAGIHSLEAES-EADDVIATL 111

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                +   A  I+STDK   QLV     ++D  K+  +DI    KK  +   + +   A
Sbjct: 112 ATKMVENSGAAIIVSTDKGFSQLVKKNIQIWDHFKQLFLDISAHEKKLAVEQYQFLDFIA 171

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L GDS + IPGI GIG K+AA LL ++  L NI  +   +   K+ + + E  E AR+S 
Sbjct: 172 LAGDSGNKIPGIAGIGPKSAADLLNKFRTLANIYNSLDNL-GAKQAQKLAEGREMARISY 230

Query: 245 KLVMLRTDVPITIPLEHLILE 265
           KL  L+  +P+ I L+   ++
Sbjct: 231 KLGQLQCHMPLEINLKQFRVK 251


>gi|300781564|ref|ZP_07091418.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
 gi|300533271|gb|EFK54332.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
          Length = 1474

 Score =  211 bits (537), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 113/564 (20%), Positives = 225/564 (39%), Gaps = 59/564 (10%)

Query: 441  GKNTLTKEILSYLKKFFENEHFLKIGHNI-KYDKLVLHR-YGISMRG------FEDIMLM 492
             +   T +I   L    E    + +GHNI +YD  VL R YG+ +          D ++M
Sbjct: 935  AEPVATTDIAGELIPLLEQADTI-VGHNIVQYDLPVLQRLYGLDVGALIKAGKVRDTLIM 993

Query: 493  SYVLDSGRSS--HDIASIAQK------WLSYTRKEILKSRKSSIPIDKISDS--QVQEHA 542
              +   G  +  +++ ++A +       L+ +   +    K     DKI     +  E+A
Sbjct: 994  VRLASGGNRNLEYNLDAVAHRCGVDGKLLAGSESALKALAKQYGGFDKIPVDNPEYVEYA 1053

Query: 543  IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
            +++      ++  L P   +E +   Y R +   +  +S +E  G+++D   +    AE 
Sbjct: 1054 LQDVRANGAVYEKLLPA-TIEAVGEDYLRREHEKMHSLSVVESHGVRVDTAKVDAFIAEE 1112

Query: 603  SKNLLSLEENIYDLSGEKFNLSSP-------KQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            ++    +   + D  G      +P       + + + L  +    +  +T  G   T+A+
Sbjct: 1113 AQTKAEIRAWLVDTVGIPDEGKAPWASAAGKQAIAEYL--ERFGVAAPRTAKGAISTSAK 1170

Query: 656  DLEQINCGDNPIIKNILEWRQLSKIKS--TYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
             L  +      + + +    ++  +    T A ++  ++       H   S     TGRL
Sbjct: 1171 ALNDLAEAHADVPEVVELAAKMETLLQSSTPATTIKKYLRGERVYPHITSSQ---ATGRL 1227

Query: 714  ASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLISADYSQIELRILAHIAKITPLYQVFE 772
            ++  P +     + +   + R   ++    ++LIS D SQI+ R +A  +       +F 
Sbjct: 1228 STTNPGMTVFGSRDERLIRQREMIVADSADEELISVDLSQIDARCMAAGSGDAAYAALFA 1287

Query: 773  NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
               D H  +A  +FG          R  AK +  +  YG+ P   A    I   EA + +
Sbjct: 1288 PGRDAHTEMAIRVFG------DAARRSDAKALGHAANYGMGPKSFAAHAGISEVEAKEQL 1341

Query: 833  KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
             R    FP +  + +  +   +  G++ T FGRR+  D         R      A  A  
Sbjct: 1342 DRLHFEFPQLEAFKDHLRKHAKALGWIATGFGRRVAVD---------RAKAYTQAPAAYG 1392

Query: 893  QGSAADITRRAMISVHKSLEDHKLATKML-LQIHDELVFEVPEEEITTASQIIVHSMEKA 951
            QG+A D+    ++++   + +      M+ + +HDE+V  VP E      Q ++ + +  
Sbjct: 1393 QGTARDVFLEGVLNLPAEVLE------MVRIFVHDEIVLSVPRERAEDIKQTVMDAFKAV 1446

Query: 952  CLP-KINLRVPLKVN-IKVSNNWQ 973
             LP K ++ VP+  +    + +W 
Sbjct: 1447 TLPCKGDVDVPVLSDSAGPAESWA 1470


>gi|322786085|gb|EFZ12696.1| hypothetical protein SINV_15346 [Solenopsis invicta]
          Length = 1172

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 195/447 (43%), Gaps = 67/447 (14%)

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHD 504
            KE ++ +K+ F +        ++K    +LHR  GI+ +  F D ++  + L +     +
Sbjct: 780  KEQMALMKELFYDTTLYMKCFSVKDIYKLLHRCCGITAKCRFLDPIIAHW-LHTNGFEKN 838

Query: 505  IASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
               +  ++    ++  K       +   +D  S    +  +   + +   +   +  KL 
Sbjct: 839  FTEMVVQYFPQGNFIMKRTKSCYYAGPGMDVQSSLPGEFRSAAEAVLTWHMMDNVTSKLE 898

Query: 562  V--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
                 LL+ +  ++  ++  ++ ME++GI ++   L+++SA IS  + SLE   Y+L+G 
Sbjct: 899  ELDPALLYTFREVEMRIVTTLACMELSGIGVNLKSLQELSAVISDEMQSLETKAYNLAGR 958

Query: 620  KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            KFN SS                                                    SK
Sbjct: 959  KFNFSS----------------------------------------------------SK 966

Query: 680  IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-----IKTDLGQKIR 734
                    L       + R+        T+TGR++  EPNLQN+P        +L   +R
Sbjct: 967  EVGQMIYPLLKLAQNDS-RIRGNCITC-TVTGRVSMHEPNLQNVPKDFNFADNNLVISVR 1024

Query: 735  RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
             AF+      ++SADY Q+ELR+L H ++ + L ++ +   DI + +AA+   V  E+V+
Sbjct: 1025 MAFVPALGNIMLSADYCQLELRLLTHFSQDSVLCKIMKQPGDIFKNIAAKWNNVTEEQVN 1084

Query: 795  PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
             +MR+  K + + +IYG+    LA  L +   EA ++++ +   +PGI++++        
Sbjct: 1085 NEMRQRTKQLCYGMIYGMGVKSLAENLCVSEPEAQEFLESFMGAYPGIYKWLNDVLEEAH 1144

Query: 855  QNGYVETIFGRRIHYDEINSPKSSIRN 881
            ++GYV T+ GRR    ++ S KSS R 
Sbjct: 1145 RDGYVATLLGRRRQLPDLKSTKSSTRG 1171


>gi|295704093|ref|YP_003597168.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294801752|gb|ADF38818.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 295

 Score =  211 bits (536), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 17/263 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL------LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
              L ++DG + + R ++AT        L+R   G   NA+      +  L+     +  
Sbjct: 2   NETLLVIDGFNLLSRCYFATSYGRDEAALTRNSKGQFTNALRVTIQKMHALIH----QYE 57

Query: 58  ASHFAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            SH  V +D     T R + Y  YK  R ++PE L+ Q   ++      GI  + +  +E
Sbjct: 58  PSHIFVAWDVKREDTKRKDTYALYKQTRAELPEPLIQQYETLKQFFDTVGIYQMSLSSYE 117

Query: 117 ADDIIATYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVK---EEKIDIEHVIKKW 172
           ADD+I        KE      I S D+DL+QL+          K   +     +H  +++
Sbjct: 118 ADDLIGALVSKWSKEKQSPGYIYSNDRDLLQLLDQHISQIIAKKQVGDLVYGFKHFQEEY 177

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--KRR 230
            I P + V ++AL GD  DNIPG+PG+G K A  L+Q+YG++  I     ++     + +
Sbjct: 178 NIHPRQWVDVKALLGDKSDNIPGVPGVGEKAALPLIQQYGSIHEIYAQIEQLDPAFNRYK 237

Query: 231 ENILEYAETARLSRKLVMLRTDV 253
           + + E  E   LSR+L  +  D+
Sbjct: 238 KKLAEGKELGMLSRELAEIIIDI 260


>gi|258621626|ref|ZP_05716658.1| exodeoxyribonuclease IX [Vibrio mimicus VM573]
 gi|258586098|gb|EEW10815.1| exodeoxyribonuclease IX [Vibrio mimicus VM573]
          Length = 259

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 127/267 (47%), Gaps = 13/267 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQPDP---------NDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ N+E    +      +K R+ +    E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKDILTQFANIEEAYASPE--LPEKYRKKLEPQIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGP 270
           +++  L+TD+ +   L+ +     +  
Sbjct: 233 KQVSALKTDIELGFNLQDIRFNPPSAD 259


>gi|89075438|ref|ZP_01161855.1| exonuclease IX [Photobacterium sp. SKA34]
 gi|89048854|gb|EAR54424.1| exonuclease IX [Photobacterium sp. SKA34]
          Length = 258

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 13/264 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P       G P   +    +   + L+   K S  +H   +F
Sbjct: 4   HLVVIDALNLIRRVHAARP-------GEP--DVKATADTCCRALKKIIKISQPTHIVAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK  R  +P+ L+  + +++ A    GI ++   G EADD++AT
Sbjct: 55  DHNGDDRGWRAELLPHYKEGRKPMPDELMTGMDIIQDAFMEIGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+ PT  + D  +E  +D   + K++G+ P+K+    
Sbjct: 115 LALKVASRGEQVTIISTDKGYCQLLQPTLRIRDYFQERWLDSAFIEKEYGVAPDKLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPGI GIG K A  LL +Y  LE IL  A  +  K  ++ I  + E A  S
Sbjct: 175 GLAGISSSKIPGIAGIGPKAAVELLSQYPTLETILA-ADDLPAKW-QKKITGHHEVALAS 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDC 267
           + +  L+TD+ +   L+ +     
Sbjct: 233 KAVSSLKTDLELGFNLQDIRYITP 256


>gi|262165146|ref|ZP_06032883.1| probable exodeoxyribonuclease IX [Vibrio mimicus VM223]
 gi|262024862|gb|EEY43530.1| probable exodeoxyribonuclease IX [Vibrio mimicus VM223]
          Length = 259

 Score =  210 bits (535), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 77/267 (28%), Positives = 125/267 (46%), Gaps = 13/267 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQPDP---------NDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SP   + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPPLQIRDYFQHRWLDEPFITQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPG+ GIG K A  +L ++ N+E    +      +K R+ +    E AR+ 
Sbjct: 175 GLAGVSSSQIPGVAGIGPKAAKEILTQFANIEEAYASPE--LPEKYRKKLEPQIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGP 270
           +++  L+TD+ +   L+ +     +  
Sbjct: 233 KQVSALKTDIELGFNLQDIRFNPPSAD 259


>gi|258624377|ref|ZP_05719325.1| exodeoxyribonuclease IX [Vibrio mimicus VM603]
 gi|258583339|gb|EEW08140.1| exodeoxyribonuclease IX [Vibrio mimicus VM603]
          Length = 259

 Score =  210 bits (535), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 127/267 (47%), Gaps = 13/267 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQPDP---------NDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ N+E    +      +K R+ +    E AR+ 
Sbjct: 175 GLTGVSSSQIPGVAGIGPKAAKEILTQFANIEEAYASPE--LPEKYRKKLDPQIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGP 270
           +++  L+TD+ +   L+ +     +  
Sbjct: 233 KQVSALKTDIELGFNLQDIRFNPPSAD 259


>gi|158315953|ref|YP_001508461.1| 5'-3' exonuclease [Frankia sp. EAN1pec]
 gi|158111358|gb|ABW13555.1| 5'-3' exonuclease [Frankia sp. EAN1pec]
          Length = 318

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 84/320 (26%), Positives = 129/320 (40%), Gaps = 28/320 (8%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L D  S  +RAF+  P   R  DG+ VNA+ G  ++L + +   R   +   F   
Sbjct: 2   DRLLLADTPSLYFRAFHGVPRSVRAPDGMAVNAVRGLLDVLARQIVEVRPRRLVCCFDAD 61

Query: 65  FDYPAVTFRNEIYPDYKANR----------------PKIPEMLLPQLPLVRLATQAFGIP 108
           +      FR  +   YKA+R                 ++P+ L  QLP++     AFGI 
Sbjct: 62  W---RPAFRVALIGSYKAHRVAGPTPGPAAGAGGVEEEVPDELEAQLPVIDAVLDAFGIA 118

Query: 109 AIEIQGFEADDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKI 163
            +E  GFEADD+I T          G  V I++ D+DL QLV         Y   +   +
Sbjct: 119 RVEAAGFEADDVIGTLATRHSGRPGGGPVDILTGDRDLFQLVCDDTGVVVRYAVERFAVV 178

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
           D   +  ++GIP         L GD  D +PG+ GIG KTAA LL  +G+L  IL     
Sbjct: 179 DEASISARYGIPGRAYADFAVLRGDPSDGLPGVAGIGAKTAAALLGRFGSLRAILTALDA 238

Query: 224 IK----QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
                     R  +    +    +  +V +  DVP+    + L +   +   L +     
Sbjct: 239 GGEDGFPAGARRRLTAARDYVDAAVTVVGVVRDVPLGPVADVLPVRPVDEAALAALAGRY 298

Query: 280 EFTKLINRVATTYDCDAANI 299
                ++R+       A   
Sbjct: 299 GLGGSVDRLTMALATLAEGP 318


>gi|150017025|ref|YP_001309279.1| 5'-3' exonuclease [Clostridium beijerinckii NCIMB 8052]
 gi|149903490|gb|ABR34323.1| 5'-3' exonuclease [Clostridium beijerinckii NCIMB 8052]
          Length = 340

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 141/344 (40%), Gaps = 68/344 (19%)

Query: 5   NHLFLVDGSSFIYRAFYA-TPL-----------------LSRKHDGLPVNAIAGFCNMLW 46
           ++L L+DGSS +   F+   P                  L +   G   N +      + 
Sbjct: 3   DNLLLIDGSSLLSCCFFGNLPREYRFAKTDEEKDKYIEKLRQSPKGEFTNGVFTMMASML 62

Query: 47  KLLQNSRKESIASHFAVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAF 105
           K+++N       +H AV +D     TFR ++Y +YK  R  +   L  Q  L +   +  
Sbjct: 63  KMIKNQN----PTHIAVAWDLTKEFTFRKKLYSEYKGTRKDMRSELGSQFALAQKVLREM 118

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----- 160
            +P    + +EADDII T      +    V+I + D+D +QLV     ++    +     
Sbjct: 119 NVPEFVFKEYEADDIIGTLAKKFGR-SMRVSIWTKDQDCLQLVDDNVRVWLITSKCADMY 177

Query: 161 ----------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
                            +   ++V   +G+ P +++  +A+ GDS DNIPGI G+G K+ 
Sbjct: 178 ESLGINIKELNIPSGVFEFTTQYVNHFYGVDPIQIIDRKAIEGDSSDNIPGINGVGEKSV 237

Query: 205 ALLLQEYGNLENILINASRIKQKKRRE-------------NILE-------YAETARLSR 244
             LLQE+  +E I        +K+ ++              ++E         + A L +
Sbjct: 238 IPLLQEFETVEGIYDFIENSPEKEIKKMFKDLGILRSPLSKLVEESNEKIVGKKAALLCK 297

Query: 245 KLVMLRTDVPI--TIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
           +L  ++ D+     I ++ L L+  +   + +    L FT L+N
Sbjct: 298 QLATIKCDIEELNNITIDQLKLQ-IDEEGMKNIFTELGFTNLLN 340


>gi|209694283|ref|YP_002262211.1| exonuclease IX [Aliivibrio salmonicida LFI1238]
 gi|226698165|sp|B6EGG3|XNI_ALISL RecName: Full=Protein Xni
 gi|208008234|emb|CAQ78379.1| 5'-3' exonuclease [Aliivibrio salmonicida LFI1238]
          Length = 257

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 123/264 (46%), Gaps = 13/264 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P             I        + +    KE+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPNQDD---------IQAVVTTTGRTINRILKETEPTHIIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK +R  +PE L   +  ++ +    GI ++   G EADD++AT
Sbjct: 55  DHHLQDRGWRAEVLPKYKEDRKPMPEALQKGMDAIQESWWKLGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTI+STDK   QL+SPT  + D  +   +D   + K++G+ PE++    
Sbjct: 115 LANKVASRNEQVTIVSTDKGYCQLLSPTLRIRDYFQHRWLDEPFIEKEFGLKPEQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   I GIPGIG K A  +L ++  +E    N S    KK R+   EY  TA L 
Sbjct: 175 GLAGISSSKITGIPGIGPKAALEILTQFPTIEA--ANESDELPKKYRKKFDEYYNTAILC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDC 267
           RK+  LRTD+ +   L+ +  E  
Sbjct: 233 RKVAGLRTDIELGFNLQDIRYEKP 256


>gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  209 bits (533), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 7/235 (2%)

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVH 700
           G K KTG   +T + +  I    +P+I  IL++R+L+K+ STY + L    +  +  R++
Sbjct: 1   GKKGKTGY--STDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIY 58

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           + +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELRILAH
Sbjct: 59  SSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAH 118

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
            ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    L+  
Sbjct: 119 FSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQN 174

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
           L+I  + A  YI++YF  F  I +Y EK KN  +QNG++ T+ GR+ ++D  N+ 
Sbjct: 175 LKIEANLAKSYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAK 229


>gi|325842751|ref|ZP_08167786.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489551|gb|EGC91916.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 330

 Score =  209 bits (533), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/357 (26%), Positives = 165/357 (46%), Gaps = 39/357 (10%)

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           NL+S KQL   L   +  P           +  +   ++      I+  I+ +++ +K+ 
Sbjct: 5   NLNSSKQLKQSLQE-MGIPVT---------SVQEGKLKLFSSKYSIVDEIVRYKKYNKLV 54

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           +TY D L N ++K   R+   ++L  T T R++  +PN Q+IP       ++++ F +  
Sbjct: 55  TTYGDKLKNQLSKDG-RLRGHWNLIGTKTSRMSCQKPNFQSIPK------EMKKYFQAEE 107

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               I  DYS IELRILA I     L   F    D+H   A  I  +N E +S   R+  
Sbjct: 108 ENVFIIMDYSTIELRILAEITNCQKLIDAFNAGADLHVETAKAI--LNQESISDSERKLG 165

Query: 802 KTINFSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           K +NF +IYG++PF L  ++       I   +A ++I  YF  +P + +Y ++      Q
Sbjct: 166 KVVNFGLIYGLTPFGLKEKINAIPGFNISEYKAEEFIANYFKMYPEVAKYQQQQ-----Q 220

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
              + T  G        ++     R +  R   N  +Q S A+  + ++    K  +D  
Sbjct: 221 YSDIITTLGGSYW----DNTNGLDR-LKPRQRYNYAVQASCAEGLKESLALFCKLKQD-- 273

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
              K++  IHDE++ EVPE E  TA + +  +M       +  ++P++V++ +S  W
Sbjct: 274 -KWKLVSAIHDEIIIEVPETEALTAKECLKQAMIDGMGKLVK-KIPIEVSVNISKTW 328


>gi|309813094|ref|ZP_07706818.1| 5'-3' exonuclease, SAM domain protein [Dermacoccus sp. Ellin185]
 gi|308432898|gb|EFP56806.1| 5'-3' exonuclease, SAM domain protein [Dermacoccus sp. Ellin185]
          Length = 308

 Score =  209 bits (533), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 141/313 (45%), Gaps = 28/313 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     L L+D +S  +RAFY  P      DG P NA+ GF +M+  LL       I + 
Sbjct: 1   MTPR-RLMLLDSASLYFRAFYGVPE-RTAADGTPNNALRGFADMIATLLTTYEPTDIVAC 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR--------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           +   +      FR E  P YKA+R         + PE L PQ+PL+R   +  GI  + +
Sbjct: 59  WDNDW---RPAFRVEAIPSYKAHRVQEGSDVAEESPENLTPQVPLIRELLELAGITRLGV 115

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEK-----IDI 165
            G+EADD+I T T+     G  V +++ D+DL QLV       +  T K        +D 
Sbjct: 116 DGYEADDVIGTLTHRFRDAG-PVDVVTGDRDLFQLVDDAMGVRVIYTAKGGVRAPDLVDE 174

Query: 166 EHVIKKWGI-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS-- 222
             ++ ++G+        +  + GD+ D +PG+ GIG KTAA L+ E+G+L  I    +  
Sbjct: 175 SFLMARYGVATGRAYADMAVMRGDTSDGLPGVAGIGEKTAAALIAEFGSLAAIRDAIASG 234

Query: 223 --RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED-CNGPRLISFLKAL 279
             RIK   RR  +   ++   ++ ++V +  DV +   L     +   +G     F    
Sbjct: 235 DPRIKGA-RRTRLEAASDYLDVAPRVVDVALDVRVPHDLVTTRPQGVADGAGFADFAARW 293

Query: 280 EFTKLINRVATTY 292
           +      R++   
Sbjct: 294 DMGGSAERLSAAL 306


>gi|262402754|ref|ZP_06079315.1| probable exodeoxyribonuclease IX [Vibrio sp. RC586]
 gi|262351536|gb|EEZ00669.1| probable exodeoxyribonuclease IX [Vibrio sp. RC586]
          Length = 259

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 127/267 (47%), Gaps = 13/267 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQPDP---------NDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLSDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQHRWLDEPFIAQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   IPG+ GIG K A  +L ++ N+E    +      +K R+ +    E AR+ 
Sbjct: 175 GLTGVSSSQIPGVTGIGPKAAKEILIQFANIEEAYASPE--LPEKYRKKLEPQIEMARIC 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGP 270
           +++  L+TD+ +   L+ +     +  
Sbjct: 233 KQVCALKTDIELGFNLQDIRFNSPSAD 259


>gi|116670552|ref|YP_831485.1| 5'-3' exonuclease [Arthrobacter sp. FB24]
 gi|116610661|gb|ABK03385.1| 5'-3' exonuclease [Arthrobacter sp. FB24]
          Length = 312

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 135/314 (42%), Gaps = 32/314 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+D +S  +RAFY  P   R+ DG PVNA+ G  +M+ +L      +  A+H    
Sbjct: 3   HRLMLLDTASLYFRAFYGVPDTIRRADGTPVNAVRGLLDMIARLTT----DYEATHLIAC 58

Query: 65  FDYP-AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           +D      +R ++ P YK++R             +P+ L  Q+P++R   +  GI  +  
Sbjct: 59  WDDDWRPQWRVDLIPSYKSHRVAEVVAGAPDIEVVPDALETQIPMIRRVLELAGIAVVGA 118

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIE 166
              EADD++ TY   A   G  V +++ D+DL Q+VS                 E +   
Sbjct: 119 TEHEADDVVGTYASQA---GLPVDVVTGDRDLFQVVSDDRGVRVIYTARGMKNLEVVTDA 175

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            ++ K+ + PE+      L GD+ D +PG+ GIG KTAA LL EYG L  +L  A+    
Sbjct: 176 VIVGKYRVLPEQYADYAILRGDTSDGLPGVAGIGEKTAASLLGEYGTLAMLLEAATDPGS 235

Query: 227 K---KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC----NGPRLISFLKAL 279
                 R  +    +   ++  +V +  D+ +    E     D     +   L       
Sbjct: 236 GLSASVRSKLAAATDYLEVAPTVVNVVRDLSLPTLEEAGAQLDPVAGDSRAELERLASEW 295

Query: 280 EFTKLINRVATTYD 293
                + R+    D
Sbjct: 296 NLGGSVKRLLEALD 309


>gi|326794727|ref|YP_004312547.1| 5'-3' exonuclease, SAM-fold domain-containing protein [Marinomonas
           mediterranea MMB-1]
 gi|326545491|gb|ADZ90711.1| 5'-3' exonuclease, SAM-fold domain-containing protein [Marinomonas
           mediterranea MMB-1]
          Length = 267

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 9/267 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFA 62
           +  L L+DG + I R + A    S K D   +  + G   + + KL+    K   ++H A
Sbjct: 7   DKKLLLIDGLNLIRRLYAAL--ESEKDDIRRIERVQGACIDAIAKLV----KLFDSTHIA 60

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           ++FD P  T+R+  YP+YK  R  + + L   +       +      I + G+EADDIIA
Sbjct: 61  IVFDSPEKTWRHTEYPEYKLGRAPMDDSLFAAIEGFAKVFRFNHWHCIRLSGWEADDIIA 120

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T    + + G    I+STDK   QL+  P    YD   ++  D + V+ K+G+ P++M  
Sbjct: 121 TLASKSAERGVKSIIVSTDKGFTQLLEEPNIYQYDYFGKQGFDKDWVVAKYGVFPQQMTD 180

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             A  GD+ ++IPGI GIG KTAA + Q   ++E++  N  + +  + +  +    + A 
Sbjct: 181 YWAFVGDTTNHIPGIKGIGPKTAASIFQAEQSIESVFANLEQ-QSARIQSQLEGNLDHAL 239

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN 268
            +RK+V LR DV + I L  L +   N
Sbjct: 240 WARKMVTLRQDVSLGIRLSQLEIRSTN 266


>gi|84496431|ref|ZP_00995285.1| putative 5'-3' exonuclease [Janibacter sp. HTCC2649]
 gi|84383199|gb|EAP99080.1| putative 5'-3' exonuclease [Janibacter sp. HTCC2649]
          Length = 333

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 145/337 (43%), Gaps = 50/337 (14%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  E  L L+D +S  +RAF+  P      D  P NA+ GF +M+  L    +     +H
Sbjct: 1   MTSE-RLLLLDSASLYFRAFFGVPDQRSSSDEPPTNALRGFLDMIATLTTAHQ----PTH 55

Query: 61  FAVIFDYP-AVTFRNEIYPDYKANR--------------------------------PKI 87
               +D      FR ++ P YKA+R                                 ++
Sbjct: 56  LVACWDNDWRPQFRVDLIPSYKAHRVGEPVGSAKNSVNVAAGAVPDQAHPASADTAIEEL 115

Query: 88  PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           P+ L PQ+PL+  A  A GI  +   GFEADD+I T      +   A+ +++ D+DL+QL
Sbjct: 116 PDDLSPQVPLIADALAALGIARLGADGFEADDVIGTLVER-HRGSMAIDVVTGDRDLLQL 174

Query: 148 VSP--TTCLYDTVKEEKIDIE-----HVIKKWGIPP-EKMVCLQALTGDSIDNIPGIPGI 199
           +    +  +  T K    + +     ++ +K+ +P  +  + +  L GD+ D +PG+ GI
Sbjct: 175 IDDANSVRVLYTGKGGVREPDQGTQAYLQEKYAVPNGDAYLDMSILRGDTSDGLPGVKGI 234

Query: 200 GYKTAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPIT 256
           G KTAA L+  YG+LE +   + +     +  RR N+   A    ++ ++V +  D P+ 
Sbjct: 235 GDKTAAQLIAAYGSLEGLRKAVADGDPAIKGARRANLEAAAAYLDVAPRVVRVARDAPVA 294

Query: 257 IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
                L  +  +   L         T  INRV     
Sbjct: 295 DTDISLPTKVADTRLLSLLASTYGITNPINRVLGALQ 331


>gi|85059930|ref|YP_455632.1| exonuclease IX [Sodalis glossinidius str. 'morsitans']
 gi|123518932|sp|Q2NRJ8|XNI_SODGM RecName: Full=Protein Xni
 gi|84780450|dbj|BAE75227.1| exodeoxyribonuclease IX [Sodalis glossinidius str. 'morsitans']
          Length = 250

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 120/264 (45%), Gaps = 21/264 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L         SH   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGASCLAACGHALSQLILHCTPSHAVA 47

Query: 64  IFDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD      ++R++  P YK+ R  IPE L   +P +R       +      GFEADDI 
Sbjct: 48  VFDDDERHESWRHQQLPQYKSGRAPIPEDLQALMPAIRAEFNRQSVTCWHASGFEADDIA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT        G  VT++STDK   QL+SP+  + D  ++  +D+  V++ +G+ P+++  
Sbjct: 108 ATLAIKVAAGGHRVTLVSTDKGYCQLLSPSIQIRDYFQKRWLDMPFVMRHFGVQPQQLTD 167

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   IPG+ GIG K+AA L+ E G LE +    +++ +K  R  +    + A 
Sbjct: 168 FWGLAGVSSSKIPGVAGIGPKSAAQLISEAGTLEALYQRLAQLPEKW-RHRLEHDRDLAF 226

Query: 242 LSRKLVMLRTDVPITIPLEHLILE 265
           L R++V L T V +   L+ L L 
Sbjct: 227 LCRRIVTLDTAVTLQGNLQQLRLR 250


>gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
 gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1388

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 112/590 (18%), Positives = 229/590 (38%), Gaps = 57/590 (9%)

Query: 414  LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN-IKYD 472
            L+  D     V  +   + + T   +  +   T +I   L    E    + +GHN ++YD
Sbjct: 821  LETGDADDLHVTEVPGFVRLATYSVNGAEPVPTTDIAGELIPLLEKADTI-VGHNVLQYD 879

Query: 473  KLVLHR-YGISMRG------FEDIMLMSYVLDSGRSS--HDIASIAQK------WLSYTR 517
               L R YG+ ++         D ++M+ +   G  +  +D+  +A +       L+   
Sbjct: 880  LPALQRLYGLDVKALIKADRVRDTLVMARLRAGGDKNLKYDLDKVASRCGVDGKLLADGE 939

Query: 518  KEILKSRKSSIPIDKISDSQ--VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
              +    K     DKI        E+A+++    + ++  L   +  E +   Y RL+  
Sbjct: 940  TALKALAKQFGGFDKIPVDNPNYVEYALQDVRANVAVYEKLLTSVGKE-INQDYLRLEHA 998

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP------KQL 629
             +  ++ +E  GI++D   + Q  AE  +    +   + D  G      SP      KQ+
Sbjct: 999  KMHALAVVEARGIRVDTSKVDQFLAEEEQTKGEIRTWLIDTVGIPDEGKSPWASAAGKQV 1058

Query: 630  GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR-QLSKIKSTYADSL 688
                 ++    +   +K     +T    E      +P +  ++E   ++  +        
Sbjct: 1059 IADYLSQFNVAAPRTSKGSISTSTKALNE--LAEKHPDVPEVVELAAKMETLLHASTP-- 1114

Query: 689  PNHINKRTQRVHTFYSLAS-TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-TKKLI 746
             + IN+  +    + S+ S   TGRL++ +P +     + +   + R   +     + L+
Sbjct: 1115 ASTINRYLRGDRVYPSIKSIQATGRLSTTKPGMTVFGSRGEWLIRQREMILPDSTDEALV 1174

Query: 747  SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            S D SQI+ R +A  +      Q+F    D H  +A  +FG          R  AK +  
Sbjct: 1175 SVDLSQIDARCMAAGSGDANYAQLFTPGRDAHTEMALRVFG------DASRRSDAKALAH 1228

Query: 807  SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
            +  YG+     A    I   EA   ++R  + FP + ++ +  +     +G++ T FGRR
Sbjct: 1229 AANYGMGQKSFAQHAGISEVEATKQLERLHYEFPALEKFKDHLRKHAAAHGWIPTGFGRR 1288

Query: 867  IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML-LQIH 925
            +  D   +                  QG+A D+    ++++   + +      M+ + +H
Sbjct: 1289 VTVDRAKAYTRGPAAYG---------QGTARDVFLEGVLNLPAEVLE------MVRIFVH 1333

Query: 926  DELVFEVPEEEITTASQIIVHSMEKACLPKI-NLRVPLKVN-IKVSNNWQ 973
            DE+V  VP +        ++ + +   LP    + VP+  +    + +W 
Sbjct: 1334 DEIVLSVPRDRAEEIKHTVMGAFQAVELPNTGGVDVPVLSDSAGPAESWA 1383


>gi|148979790|ref|ZP_01815697.1| exonuclease IX [Vibrionales bacterium SWAT-3]
 gi|145961584|gb|EDK26884.1| exonuclease IX [Vibrionales bacterium SWAT-3]
          Length = 257

 Score =  209 bits (531), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 126/262 (48%), Gaps = 13/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P  +     +             + L     ES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPDPTDIARTI---------TTTTRTLNKITSESKPTHIIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK NR  +PE L+  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQERGWRAEVLPAYKQNRKPMPEPLMQGLDAIQQAWWELGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+SPT  + D  +   +D   +  ++G+ P+++    
Sbjct: 115 LAKKVADHGETVTIISTDKGYCQLLSPTLQIRDYFQHRWLDKPFIEAEFGVKPDQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PGIPG+G K A  +L  Y ++E           KK R+   E+ E+AR+ 
Sbjct: 175 GLTGVSSSQVPGIPGVGPKAAKEILTTYPDIETAFQAED--LPKKYRKKFDEHIESARVC 232

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           +++  L+TD+ +   L+ +  E
Sbjct: 233 KQVSALKTDIDLGFNLQDIRYE 254


>gi|256825236|ref|YP_003149196.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Kytococcus
           sedentarius DSM 20547]
 gi|256688629|gb|ACV06431.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Kytococcus
           sedentarius DSM 20547]
          Length = 316

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 134/320 (41%), Gaps = 30/320 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M  +  L L+D +S  YRAF+  P   R  D  P NAI G  +M   L+ + R  ++   
Sbjct: 1   MT-DGPLMLIDAASLYYRAFHGVPDRRRSADAPPNNAIRGLVDMTASLIAHRRPAALVMC 59

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR----------PKIPEMLLPQLPLVRLATQAFGIPAI 110
           +    D     FR E  P YK +R             P  L+PQ+P++     A GI  +
Sbjct: 60  WD---DDWRPAFRVEAIPSYKQHRLAAGDTTGTTEDTPADLVPQVPVIVELLAALGIARV 116

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKI 163
              G+EADD+I T           V +++ D+DL QLV          T        + +
Sbjct: 117 GAAGYEADDVIGTLVERTAGR-RPVEVVTGDRDLFQLVDDAAGVSVLYTARGGVRDADLV 175

Query: 164 DIEHVIKKWGIPPEK-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA- 221
           D   +++K+G+   +    +  L GD  D +PG+ GIG KTA  LL  +G+L  +L    
Sbjct: 176 DESWLVQKYGLASGRAYAEMAVLRGDPSDGLPGVQGIGEKTAVQLLDTFGSLAGVLEALD 235

Query: 222 ---SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFL 276
               R+K   RR  + E  E    + ++V +  D P+ +    + L     +   +   +
Sbjct: 236 RGDDRLKGA-RRTRLEEGREYLAAAPQVVDVARDAPVELDEAAMALPTALLDAAAVRDLV 294

Query: 277 KALEFTKLINRVATTYDCDA 296
              +    + R+       A
Sbjct: 295 DRYDLGSPVGRLLDALGLPA 314


>gi|315181204|gb|ADT88118.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 676

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 105/580 (18%), Positives = 229/580 (39%), Gaps = 71/580 (12%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-SMRGFEDIMLMS---YV--- 495
           N  +  I   L+  F+      + H+ K D   +   G+   R + D  +     Y+   
Sbjct: 111 NVASPSIRPKLQSLFDLP-VTYVTHDAKPDLHCIWSLGLNEPRYWWDTCIAEKARYLGQH 169

Query: 496 ---------------------LDSGRSSHDIASIAQKW-----LSYTRKEILKSRKSSIP 529
                                 +     + +A  AQ++     L+ + K ++ S +    
Sbjct: 170 NNAKPTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSDLASSAKLLMGSEQDCPS 229

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +    +  + +I  + +    +L      ++  +      ++ P +   + +E  G +
Sbjct: 230 FSEFQIERTSQLSITVAKL----YLTQSQSCLMFGIHQHLISIEMPWVVTNAAIEWNGFK 285

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           + +D   Q+     + L    + +  L     N +S  Q    LF  L        K G+
Sbjct: 286 VCRDKCSQILEACERKLNLYSQELAQLGMT--NPNSQHQ-KQALFASLGL--LHHFKDGE 340

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +  +++   N   +P +  + ++  +  +       L   I     RVH+     +  
Sbjct: 341 DYSFQREMLSKNYALHPAVAFLAKYTHIDSVYKDVI--LQPGIVGSDGRVHSEQKQLTAA 398

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGR A++ PN+  +P        +R   ++     +   D +QIE+ I A +   + L +
Sbjct: 399 TGRQATVAPNILGLPA------VLRPLVVAQDGYAIGEVDLAQIEVAIAAGVYGDSNLVK 452

Query: 770 VFENSLDIHRMVAAEIFGVNIE------------KVSPQMRRHAKTINFSIIYGISPFRL 817
           ++    D++  +A E F   +E            +  P+ R   K     +IYGI+ F +
Sbjct: 453 MYNQG-DLYTAMAQEFFCDELESEYRICDSSTFKEKYPEKRAIMKQCTLGLIYGITSFGI 511

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A +L I  ++A + + ++   FP + + IEK   +    G+V T  G   +  ++++ + 
Sbjct: 512 AKKLNISVNKATELMDKFLSMFPELQKAIEKMPQYGALRGHVSTATGLHRY-RQLDAKRG 570

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
                 +   +N P+QG+AA + + A   +H+  + +    K+++ +HD  VFEVP+E +
Sbjct: 571 HT---EKNWMVNMPVQGTAAALFKAAGNRLHQLYKSY--DAKLIVAMHDAFVFEVPKEHL 625

Query: 938 TTASQIIVHSMEKACLPKI-NLRVPLKVNIKVSNNWQEEN 976
           +  S++    M +        L++   +NI   + W ++ 
Sbjct: 626 SEVSELTAQLMTQVVQEMYPQLKIRADINISQPDCWTKDG 665


>gi|221480621|gb|EEE19073.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 935

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P     +  RV T ++   T+TGRL+S  PNLQNIP   +  +  R   +   +  +++A
Sbjct: 644 PALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQNIPKAVNCREAFRDD-VQDGSAVVVAA 702

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DY+QIE+R+L      + L       +D++R +A+    +   +V+ ++R   K    ++
Sbjct: 703 DYAQIEMRLLVGEKSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKELRDKVKVTCLAL 762

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG     +A Q+ I  + A+ +  ++   FP +  +I       R++G+V T+ GRR +
Sbjct: 763 IYGSGTCTIARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTLTGRRRY 822

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-----EDHKLATKMLLQ 923
             E  S  S +R + ER ++N+ IQGSA+DI + AM+ +   L         L  ++LL 
Sbjct: 823 VPEAKSNSSHVRALGERLSVNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLS 882

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +HDELV       +   S++I      +    + + VPL V+I     W 
Sbjct: 883 VHDELVLHCSLSHLAPLSKMIK----SSLTENMPVDVPLDVSISAGPTWG 928



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 13/143 (9%)

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           R  L   +L+      + PM  +++ +++TGI I     +Q+ + +   L+++E+ +  +
Sbjct: 435 RHLLRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRV 494

Query: 617 SGEK-FNLSSPKQLGDILFTKLKFPSGAK------------TKTGQWKTTAQDLEQINCG 663
           +G     ++SP QL  +LF  L  P  A+             K    ++TA+++ Q    
Sbjct: 495 AGTSCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVD 554

Query: 664 DNPIIKNILEWRQLSKIKSTYAD 686
            +P++  I  +R L+K++STY +
Sbjct: 555 LHPVVPLIQNFRSLAKLRSTYLE 577


>gi|237845437|ref|XP_002372016.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211969680|gb|EEB04876.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 938

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P     +  RV T ++   T+TGRL+S  PNLQNIP   +  +  R   +   +  +++A
Sbjct: 647 PALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQNIPKAVNCREAFRDD-VQDGSAVVVAA 705

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DY+QIE+R+L      + L       +D++R +A+    +   +V+ ++R   K    ++
Sbjct: 706 DYAQIEMRLLVGEKSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKELRDKVKVTCLAL 765

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG     +A Q+ I  + A+ +  ++   FP +  +I       R++G+V T+ GRR +
Sbjct: 766 IYGSGTCTIARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTLTGRRRY 825

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-----EDHKLATKMLLQ 923
             E  S  S +R + ER ++N+ IQGSA+DI + AM+ +   L         L  ++LL 
Sbjct: 826 VPEAKSNSSHVRALGERLSVNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLS 885

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +HDELV       +   S++I      +    + + VPL V+I     W 
Sbjct: 886 VHDELVLHCSLSHLAPLSKMIK----SSLTENMPVDVPLDVSISAGPTWG 931



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 13/143 (9%)

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           R  L   +L+      + PM  +++ +++TGI I     +Q+ + +   L+++E+ +  +
Sbjct: 438 RHLLRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRV 497

Query: 617 SGEK-FNLSSPKQLGDILFTKLKFPSGAK------------TKTGQWKTTAQDLEQINCG 663
           +G     ++SP QL  +LF  L  P  A+             K    ++TA+++ Q    
Sbjct: 498 AGTSCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVD 557

Query: 664 DNPIIKNILEWRQLSKIKSTYAD 686
            +P++  I  +R L+K++STY +
Sbjct: 558 LHPVVPLIQNFRSLAKLRSTYLE 580


>gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium linens BL2]
          Length = 578

 Score =  207 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 116/496 (23%), Positives = 196/496 (39%), Gaps = 66/496 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+D  +  YRAFY+ P      +G PVNA+ G  + + ++++      + +     + 
Sbjct: 1   MVLIDTPALYYRAFYSVPDSIVNDEGQPVNAVRGVLDAIAQMIRRFDSPRVVATMDADW- 59

Query: 67  YPAVTFRNEIYPDYKANR-------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
                FR  I P+YKA R        +IP  L  QLP++    +A GIP  E+ G EADD
Sbjct: 60  --RPAFRTAIMPEYKAARVKDAEAGTEIPPELDAQLPIMTDVLRAAGIPIAEVDGTEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE---EKIDIEHVIKKWGI 174
           +IAT    ++     V I+S D+DL+ L+       +    K    E I    + + +G+
Sbjct: 118 VIATMAAQSQ---TPVVIVSPDRDLLALIDAASDVSVLRPRKGGEWEAISQADLPEAYGV 174

Query: 175 PPE-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIK----QKK 228
           P   +   L A+ GD  D +PG PGIG KTAA LL  +G+LE+I+  A + +K      K
Sbjct: 175 PDGTRYRELAAMRGDPSDGLPGAPGIGEKTAATLLANFGSLESIIKAAKAGVKTGGLSPK 234

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           R   ++E  ET   + +++   TDV   + LE  +  +C+   +    +A    + I R 
Sbjct: 235 RAATLIEEEETLHKTIEVMRCLTDVAHGLDLES-VPGECDRTAV----EAAAHGQNIRRS 289

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
                    +         TT+   +   T      +   S  ++ S   +K  + Q+P 
Sbjct: 290 VDNLIAALGDAGRGNDQSGTTQPAPVPTSTTAAGAGSGPASGSAAASVSPAKSRASQSPG 349

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
            +  E                          W           F + T  +D   ++ + 
Sbjct: 350 SVSAE-------------------------AW----SQSRLVGFDLETTGVDPATARIVT 380

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQD-----STGKNTLTKEILSYLKKFFEN---E 460
            A     +   T      + I              +        E+++ L     +   E
Sbjct: 381 AAFVESAENARTWLADPGVEIPEPARAVHGITTEFAQANGAPVAEVVAELCTVLADLKAE 440

Query: 461 HFLKIGHNIKYDKLVL 476
             + +GHNI YD  V+
Sbjct: 441 GAVVVGHNIVYDLSVM 456


>gi|90580953|ref|ZP_01236754.1| exonuclease IX [Vibrio angustum S14]
 gi|90437831|gb|EAS63021.1| exonuclease IX [Vibrio angustum S14]
          Length = 258

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 125/266 (46%), Gaps = 13/266 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P       G P   +        + L+   K S  +H   +F
Sbjct: 4   HLVVIDALNLIRRVHAARP-------GEP--DVKATAETCCRALKKIIKISQPTHIVAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK  R  +P+ L+  + +++ A    GI ++   G EADD++AT
Sbjct: 55  DHHGDDRGWRAELLPHYKEGRKPMPDELMTGMDIIQDAFMEIGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+ PT  + D  +E  +D   + K++G+ P+K+    
Sbjct: 115 LALKVASRGEQVTIISTDKGYCQLLQPTLRIRDYFQERWLDSAFIEKEYGLAPDKLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPGI GIG K A  LL  Y  LE IL  A  +  K  ++ I  + + A  S
Sbjct: 175 GLAGISSSKIPGITGIGPKAAVELLSLYPTLETILA-ADDLPAKW-KKKIDGHHDVALAS 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNG 269
           + +  L+TD+ +   L+ +       
Sbjct: 233 KAVSSLKTDLELGFNLQDIRYVTPQA 258


>gi|169825451|ref|YP_001695626.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|168994728|gb|ACA42267.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
          Length = 300

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 90/256 (35%), Positives = 132/256 (51%), Gaps = 15/256 (5%)

Query: 8   FLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
            LVDG + + R F+AT        DG   N ++ F  M++   +        ++  V FD
Sbjct: 25  LLVDGDNILNRTFHATKYEYKTAPDGRHTNGVSAFLKMVFGYQRKFS-----ANIVVFFD 79

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
                FR E+YP+YK  R + PE L+ Q P ++    A  IP+ E   FEADD+IA+   
Sbjct: 80  -QGKGFRKELYPEYKDGRKEKPEELIQQFPTLKEVLLAADIPSFESDYFEADDLIASSIS 138

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKKW-GIPPEKMVCL 182
               +G    I+S DKDL+QLVS         +   +  I  E    ++ G+ P ++V +
Sbjct: 139 KL--QGHK-YILSNDKDLLQLVSDDVTVIRKGNKNVDSLITPETFTNEYPGMTPLQIVDI 195

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR-ENILEYAETAR 241
           +AL GDS DNI G+PGIG K A  L+Q YG +EN++++    K+ KR    ++   E A 
Sbjct: 196 KALAGDSSDNIKGVPGIGEKGAFNLVQFYGTVENMIVSTECPKELKRYFTKLMAAKEDAI 255

Query: 242 LSRKLVMLRTDVPITI 257
            S+ L  LR D  ITI
Sbjct: 256 FSKMLTTLRKDASITI 271


>gi|239623599|ref|ZP_04666630.1| 5'-3' exonuclease [Clostridiales bacterium 1_7_47_FAA]
 gi|239521630|gb|EEQ61496.1| 5'-3' exonuclease [Clostridiales bacterium 1_7_47FAA]
          Length = 357

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 80/356 (22%), Positives = 134/356 (37%), Gaps = 81/356 (22%)

Query: 3   KENHLFLVDGSSFIYRAFYATPL------------------LSRKHDGLPVNAIAGFCNM 44
            EN   +VDGSS +   +YA                     +    DG   N I G    
Sbjct: 2   SENKFVIVDGSSLLSTCYYAVLPREIMFAKTDEEKQKHYDKILHAADGTYTNGIFGVLKA 61

Query: 45  LWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA 104
           +  LL+  + +    H A +FD    TFR E+YPDYK  R + P+ L  Q  L+    + 
Sbjct: 62  VVSLLKKQQPD----HVAFVFDKTRDTFRRELYPDYKGTRSETPKPLKQQFVLLEQILED 117

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLY------- 155
            G+  +    +EADD   +           + +++ D D +QLV        +       
Sbjct: 118 AGVRVLYSSRYEADDYAGSLVMKFRDR-IPMVVMTKDHDYLQLVDDGHNVRAWMVQSRQE 176

Query: 156 ---------------------DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
                                   K  +   EHV+ + G+ P ++  L+ + GD+ DNIP
Sbjct: 177 KADELYDKYYAPYGMDKKSVNLPEKTFEFTAEHVLAEEGVWPHQITDLKGIQGDTSDNIP 236

Query: 195 GIPGIGYKTAALLLQEYGNLENILINASRIKQ---------------------------K 227
           G+ G+    A +LL EYG +E I       ++                           K
Sbjct: 237 GVKGV-ASAAPILLGEYGTIEEIYAAIHEAEKDKASLKELQDFWKSGLGISRSPYKALTK 295

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
              E+ L     A LS++L  ++TD+ I   L+   +   +  +L ++ + L+  +
Sbjct: 296 TGEEDELCGEAAALLSKRLATIKTDIAIEESLDDFHVSGYDEDKLKAWCRKLDIKE 351


>gi|221501798|gb|EEE27554.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 932

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
           P     +  RV T ++   T+TGRL+S  PNLQNIP   +  +  R   +   +  +++A
Sbjct: 641 PALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQNIPKAVNCREAFRDD-VQDGSAVVVAA 699

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           DY+QIE+R+L      + L       +D++R +A+    +   +V+ ++R   K    ++
Sbjct: 700 DYAQIEMRLLVREKSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKELRDKVKVTCLAL 759

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           IYG     +A Q+ I  + A+ +  ++   FP +  +I       R++G+V T+ GRR +
Sbjct: 760 IYGSGTCTIARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTLTGRRRY 819

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-----EDHKLATKMLLQ 923
             E  S  S +R + ER ++N+ IQGSA+DI + AM+ +   L         L  ++LL 
Sbjct: 820 VPEAKSNSSHVRALGERLSVNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLS 879

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +HDELV       +   S++I      +    + + VPL V+I     W 
Sbjct: 880 VHDELVLHCSLSHLAPLSKMIK----SSLTENMPVDVPLDVSISAGPTWG 925



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 13/143 (9%)

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           R  L   +L+      + PM  +++ +++TGI I     +Q+ + +   L+++E+ +  +
Sbjct: 432 RHLLRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRV 491

Query: 617 SGEK-FNLSSPKQLGDILFTKLKFPSGAK------------TKTGQWKTTAQDLEQINCG 663
           +G     ++SP QL  +LF  L  P  A+             K    ++TA+++ Q    
Sbjct: 492 AGTSCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVD 551

Query: 664 DNPIIKNILEWRQLSKIKSTYAD 686
            +P++  I  +R L+K++STY +
Sbjct: 552 LHPVVPLIQNFRSLAKLRSTYLE 574


>gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 536

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 99/406 (24%), Positives = 167/406 (41%), Gaps = 30/406 (7%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L ++D  +  YRAFY+ P      DG PVNA+ G  + +  L          +     + 
Sbjct: 4   LVIIDTPALYYRAFYSVPSSLTSSDGTPVNALRGTLDAIATLATRLNTTRFIAASDAAW- 62

Query: 67  YPAVTFRNEIYPDYKANRP-------KIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
               TFR +I P YKA+R        + P+ L+PQ+PL+  A    G+P   I+  EADD
Sbjct: 63  --RPTFRTQIVPAYKAHREREDKPGTETPDELIPQIPLIYQACTLLGMPVGHIEDTEADD 120

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTV---KEEKIDIEHVIKKWGI 174
           +I +           +T++S D+DL+ L+SP     L       + E+  I  + + +G+
Sbjct: 121 VIGSVVRQW---DGPITVVSPDRDLLSLLSPDKQVTLLRPRPRGQWEETTIHDLPELYGV 177

Query: 175 PPEK-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-----SRIKQKK 228
           P  +    L AL GD  D + G  GIG KTAA LL  YG L+N+   A           K
Sbjct: 178 PNGQRYRELAALRGDPSDGLEGATGIGEKTAAKLLAGYGTLDNVFEAAKRGVKDHGLSPK 237

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           RREN+LE  +  R + +++ + TD+ +   +E       N   L  F +     + I R+
Sbjct: 238 RRENLLEAEDAVRKNVEVMTVLTDLDVGNLIEASATITPNIAGLEDFAQCYGVERSIGRL 297

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348
             T+   A    P     +  +    A + E              +S     + + +T +
Sbjct: 298 TDTFTSHAPQKAPPT---SWADEPMYAFDLETTGRDPHTAH---IVSAALIDMRTHETWE 351

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
            L     +  ++    +   T+      + +     +     + + 
Sbjct: 352 WLIYPEGEIPAEASAVHGITTEYARENGMPRAQAIAQIHQVFAERT 397



 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 66/204 (32%), Gaps = 15/204 (7%)

Query: 391 SFKIITDTMDAFHSKPIAIAIS------TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
           +F + T   D   +  ++ A+       T +       ++      +   T++ +     
Sbjct: 321 AFDLETTGRDPHTAHIVSAALIDMRTHETWEWLIYPEGEIPAEASAVHGITTEYARENGM 380

Query: 445 LTKEILSYLKKFF-ENEHFLKIGHNIKYDKLVLHR----YGISMRGFE--DIMLMSYVLD 497
              + ++ + + F E      + HN  YD  +  R    YG+++  F   D +++    +
Sbjct: 381 PRAQAIAQIHQVFAERTPACIVAHNAPYDLTIFARECAQYGLALPDFFVIDTLVIDKHAE 440

Query: 498 SGRSS-HDIASIAQKW-LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
             R     + ++  +W +S        +   +  +  ++ +       + S   +     
Sbjct: 441 PFRKGPRTLDAVCARWGVSLDNAHDATADARASGLVALAIADAFPELAQLSAEQIHGAQK 500

Query: 556 LRPKLIVEKLLHVYERLDKPMIDV 579
              +    +L         P   V
Sbjct: 501 EWKRDQAARLQEYLRTRRNPNAVV 524


>gi|260876450|ref|ZP_05888805.1| 5'-3' exonuclease [Vibrio parahaemolyticus AN-5034]
 gi|308091625|gb|EFO41320.1| 5'-3' exonuclease [Vibrio parahaemolyticus AN-5034]
          Length = 241

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 13/249 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEAKPTHIIAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHEQDRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++    
Sbjct: 115 LATKVASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PG+PGIG K A  +L ++ ++E    +   +   K R+ + E+ E+ARL 
Sbjct: 175 GLTGISSSQVPGVPGIGPKAAKEILTQFEDIEAAYAS-DEL-APKYRKKLDEHIESARLC 232

Query: 244 RKLVMLRTD 252
           +++  L+ D
Sbjct: 233 KRVAALKCD 241


>gi|134093425|ref|YP_001098500.1| putative 5'-3' exonuclease [Herminiimonas arsenicoxydans]
 gi|133737328|emb|CAL60371.1| Putative 5'-3' exonuclease [Herminiimonas arsenicoxydans]
          Length = 261

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 90/263 (34%), Positives = 132/263 (50%), Gaps = 12/263 (4%)

Query: 5   NHLFLVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L  +DG + + R + A   P  + K D     A+        KLL   +     +H  
Sbjct: 2   GKLLAIDGLNIVRRVYEANVEPDTAAKAD----AALRHSLASFRKLLATHQ----PTHVL 53

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD+   T+R+++YP Y+  R  +PE+L  +LP       A G+  I     EADD+IA
Sbjct: 54  PAFDFGGHTWRHDLYPQYREKREPMPEVLRERLPDFYAQLSALGLKVISAPEVEADDVIA 113

Query: 123 TYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           T       EG     I STDKDL  L++    ++D  K E  D + V +K+G+PPE +  
Sbjct: 114 TGVMRWLGEGRGDAVIASTDKDLHVLIAHGAVIWDHFKSEWHDSKWVEEKFGVPPEMLAD 173

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L AL GD  D+IPG+  +G KTAA LLQ YGN+E I+  A  +K     E + + +    
Sbjct: 174 LLALMGDVSDSIPGVSKVGVKTAAKLLQSYGNIERIMAGAGILKDG-LGERLRKDSAQLA 232

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +SR+LV L+TDV + +    L  
Sbjct: 233 ISRQLVELKTDVRMGVTWNMLAF 255


>gi|312884937|ref|ZP_07744627.1| exonuclease IX [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367414|gb|EFP94976.1| exonuclease IX [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 265

 Score =  207 bits (526), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 130/263 (49%), Gaps = 13/263 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P  +  +  +        C  L +++     ES  +H   ++
Sbjct: 4   HLVIIDALNLIRRVHSAQPDPNDINRTITT-----TCRTLRRIIS----ESEPTHVLAVY 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D       +R E+   YKANR  +PE LL  L  ++ A    GI ++  +G EADD+IAT
Sbjct: 55  DNHIQHRGWRAELLTSYKANRKPMPEPLLVGLESIQEAWWEIGIDSLVSEGDEADDLIAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 +    VTIISTDK   QL+SPT  + D  +   +D   + +++G+ P ++    
Sbjct: 115 LAMKVARRHEKVTIISTDKGYCQLLSPTLQIRDYFQNRWLDEPFIEREFGVRPSQLSDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            + G S   +PG+PG+G K A  +L ++ N+E+ + +       K R+ + +  E A + 
Sbjct: 175 GIVGISSSQVPGVPGLGPKAAKEILAQFVNIESAVQS--EELAGKYRKKLTDNIELATVC 232

Query: 244 RKLVMLRTDVPITIPLEHLILED 266
           +K+ MLRTD+ +   L+ +    
Sbjct: 233 KKVAMLRTDIKLGFNLQDIRYSG 255


>gi|291300659|ref|YP_003511937.1| 5'-3' exonuclease [Stackebrandtia nassauensis DSM 44728]
 gi|290569879|gb|ADD42844.1| 5'-3' exonuclease [Stackebrandtia nassauensis DSM 44728]
          Length = 303

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 135/307 (43%), Gaps = 21/307 (6%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L LVD     YR+FY  P   R  DG  +NA+ GF + L  L++N     +A   AV  D
Sbjct: 2   LVLVDAPGLWYRSFYGLPSSLRGPDGTQINAVRGFIDGLATLIRNHNATGLAC--AVDND 59

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           +    +R ++ P YK +R       + P+ L  Q+ ++     A+GIP I + G+EADD+
Sbjct: 60  W-RPAWRVDLLPSYKTHRLADNGGEEEPDALPHQVAIITQLLTAWGIPVIGVDGYEADDV 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTT------CLYDTVKEEKIDIEHVIKKWGI 174
           +AT     +     V + + D+DL QL+                K E +D   ++ + G+
Sbjct: 119 LATLATTTK---GPVGVATGDRDLFQLIDDDNDIRVIYFGRGIAKAETLDDAALVARHGV 175

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL---ENILINASRIKQKKRRE 231
            P++ V    L GD  D +PG+ GIG KTAA L+  +GNL        + +     + R+
Sbjct: 176 HPDQYVDFAVLRGDPSDGLPGVKGIGDKTAATLITTHGNLTDARAAAADPATTMAPRVRK 235

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
            + E  E    + K+V    D P+      L  E  +   + +          +NR+   
Sbjct: 236 ALTESGEYLDAAVKVVRTANDAPVPDIDPSLRPEPADPQAVETLSDTYGLANSLNRLREA 295

Query: 292 YDCDAAN 298
                 N
Sbjct: 296 LTAATGN 302


>gi|256391638|ref|YP_003113202.1| 5'-3' exonuclease [Catenulispora acidiphila DSM 44928]
 gi|256357864|gb|ACU71361.1| 5'-3' exonuclease [Catenulispora acidiphila DSM 44928]
          Length = 315

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 139/312 (44%), Gaps = 28/312 (8%)

Query: 1   MQKEN-HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M K    L ++D  +  +RAF+  P   R  DG+ VNA+ G    +  L+   + + + +
Sbjct: 1   MAKNPERLMVLDTPTLYFRAFFGVPDTIRSPDGMVVNAVRGTVESVSYLINTYKPDRLVA 60

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANR--------------PKIPEMLLPQLPLVRLATQAF 105
            F   +      FR E  P YKA+R               ++P++L PQ+P++  A  A 
Sbjct: 61  CFDADW---RPAFRVEAIPSYKAHRVLEEAPAGGAGVDVEEVPDLLSPQVPVIEAALDAL 117

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVK 159
           GI   E  GFEADD++AT     +  G  V +++ D+DL QLV  T  +          K
Sbjct: 118 GIARAEAPGFEADDVLATLAERWDGRG-PVDVVTMDRDLYQLVDDTREIRVLNIGKGVTK 176

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            E +  + + +K+GI   +     AL GD  D +PG+ GIG KTAA L+ +Y +L  +  
Sbjct: 177 LEVVTDQILREKYGITGGEYADFAALRGDPSDGLPGVSGIGEKTAAALISQYKDLAGVRA 236

Query: 220 NASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            A       +  +R+ I E A     +  +V +  D P+    + L  E  +        
Sbjct: 237 AAEDPASTLKPAQRKRIAEAAGYLDAAPTVVRVVRDAPVVEHDDRLPREPKDPIMAAMLA 296

Query: 277 KALEFTKLINRV 288
           +       + R+
Sbjct: 297 EKFGVKTAVARL 308


>gi|86158642|ref|YP_465427.1| 5'-3' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775153|gb|ABC81990.1| 5'-3' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 319

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 139/291 (47%), Gaps = 9/291 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDG+  ++RA ++     R  DG  V A  G    L  LL  +      +H AV F
Sbjct: 2   RLHLVDGTYELFRAHFSGRPGHRAPDGREVKATLGMAASLVALLHEAG--EAVTHVAVAF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  +FRN+++  YK+    +P  LL QL     A +A G+    +   EADD +AT  
Sbjct: 60  DRPIRSFRNDLWAGYKSE-EGVPPELLAQLEAAEDAARALGLVVWSMDALEADDALATAA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQ-LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                E   V I++ DKDL Q L        D ++  ++D   ++ + GI P+ +    A
Sbjct: 119 ARFRDEVEQVRILTPDKDLGQCLRGRRVVQVDRMRGREVDEAALLARRGIQPQSVPDWLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-----KRRENILEYAET 239
           L GD+ D IPG+PG G ++A+ LL  YG+LE++  + +R         K    + +  E 
Sbjct: 179 LVGDAADGIPGLPGFGERSASALLAVYGHLEDVPADPARWPAGVRGAAKLGRALEDGREA 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           A L R+L  L TD P+   LE L        RL ++  +L   +L+  +  
Sbjct: 239 ALLYRRLATLVTDAPLPERLEDLRWPGLPRERLGAWAASLGAERLVQGLEA 289


>gi|289209536|ref|YP_003461602.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Thioalkalivibrio sp. K90mix]
 gi|288945167|gb|ADC72866.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Thioalkalivibrio sp. K90mix]
          Length = 315

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 14/287 (4%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L LVD S F++RA++A   L     G P  A+ G  + L + L            A  
Sbjct: 14  PTLTLVDSSIFVFRAWFA-RGLDPDPLGRPGGAVHGLVHSLCQWL----PACAPGPIAFC 68

Query: 65  FDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           FD      FR+ + P YKA+RP  P  L  Q   +R      G   +    +EADD+IA+
Sbjct: 69  FDESLRQGFRHRLDPTYKAHRPPAPPELREQFARIRELLGQLGFRTLAHPEYEADDLIAS 128

Query: 124 YTYIAEKEGFAVTIISTDKDLMQ-LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
                   GF + + S DKDL Q ++     L+D  +   +D   + K++ I PE++  +
Sbjct: 129 LARAGRAAGFRIEVKSADKDLTQVILGDQDRLHDPERGTALDRRAIEKRFRIRPEQVADM 188

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEY 236
            AL GD+ DNIPGI G+G +TAA +L+  G+LE +L +   + +   R        I   
Sbjct: 189 LALAGDASDNIPGIEGVGPRTAARILRRLGDLETVLADPQAVARCTIRRADAVAARIAGQ 248

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           ++   LSR+L  L   +P    LE L            +L  L   +
Sbjct: 249 SDRLCLSRRLTGLVDRIPDLPRLETLHPTGPKPDAAR-WLAELGVAR 294


>gi|317124911|ref|YP_004099023.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Intrasporangium calvum DSM 43043]
 gi|315588999|gb|ADU48296.1| 5'-3' exonuclease, N-terminal resolvase-like domain
           [Intrasporangium calvum DSM 43043]
          Length = 319

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 129/286 (45%), Gaps = 38/286 (13%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  +RAFY  P +     G+P NA+ G  +M+  L++ SR     SH A  
Sbjct: 6   GRLLLLDTASLYFRAFYGVPEVV-GPSGVPTNAVRGLLDMIASLVERSR----PSHLAAC 60

Query: 65  FDYP-AVTFRNEIYPDYKANR-----------------PKIPEMLLPQLPLVRLATQAFG 106
           +D      FR E  P YK +R                  ++P+ L  Q+P++  A  A G
Sbjct: 61  WDNDWRPAFRVEAIPSYKTHRAAVTSPVDAATAEGVLEEEVPDGLAVQVPIIVDALAALG 120

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVK 159
           +  + + G EADD+I T   +   +   + I++ D+DL QLV          T       
Sbjct: 121 LARVGVDGHEADDVIGTLVTLHRGQ-LPIDIVTGDRDLFQLVDDANEVRVLYTARGGVRS 179

Query: 160 EEKIDIEHVIKKWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
            + +D   +  K+GIP       +  L GDS D +PG+ GIG KTAA L+  YG+LE + 
Sbjct: 180 PDLVDEAFLQDKYGIPDGAAYADMAVLRGDSSDGLPGVAGIGEKTAAKLITTYGSLEALR 239

Query: 219 INAS----RIKQKKRRENILEYAETARLSRKLVMLRTDVPI-TIPL 259
                    IK   +R  +   A     + K+V +  + P+  + L
Sbjct: 240 AAIDAGDPAIKGA-QRARLEAGAAYLDAAPKVVQVVREAPVGEVDL 284


>gi|215427467|ref|ZP_03425386.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis T92]
          Length = 317

 Score =  206 bits (524), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 136/314 (43%), Gaps = 33/314 (10%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           ++DG+S  +R+    P      D   VNA  GF + +  ++   R   +A    + +   
Sbjct: 6   VLDGASMWFRSIIGVPSSITAPDDRTVNAERGFIDSMAVVITQQRPTRLAVCLDLDW--- 62

Query: 69  AVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
              FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI      GFE
Sbjct: 63  RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFE 122

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHVI 169
           ADD++ T      +    V ++S D+DL+Q+V+                K        V 
Sbjct: 123 ADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVA 180

Query: 170 KKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           +++G+P  +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   K
Sbjct: 181 ERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRK 240

Query: 226 ---QKKRRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLKALE 280
               K  R  +L  +   + + ++V + TD P+T+  P + L L   +  R         
Sbjct: 241 TTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTADLATRFG 300

Query: 281 FTKLINRVATTYDC 294
               I R+    D 
Sbjct: 301 VESSIARLQKALDT 314


>gi|296139879|ref|YP_003647122.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Tsukamurella paurometabola DSM 20162]
 gi|296028013|gb|ADG78783.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Tsukamurella paurometabola DSM 20162]
          Length = 320

 Score =  206 bits (524), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 29/311 (9%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +   +RA+YA P   +  DG  VNA+ GF +M  +L+   R   + +   + +
Sbjct: 13  PLMLLDSAGLWFRAYYAIPDKVKAADGRSVNALRGFLDMTSQLIATHRPGRLVACLDLDW 72

Query: 66  DYPAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                 FR ++ P YK +R          ++P+ L PQ+ ++     A GI     +G E
Sbjct: 73  ---RPAFRVDLLPTYKTHRVAEDAEDGAEEVPDTLAPQVDMILEVLDAVGIATAGAEGLE 129

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT-------CLYDTVKEEKIDIEHVI 169
           ADD++ T    A+++   V ++S D+DL+Q+   T              K E      V 
Sbjct: 130 ADDVLGTLA--AQEQVDPVIVVSGDRDLLQVADDTPPPVKCLYIGRGIAKAEMFGPAEVA 187

Query: 170 KKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           +K+G+P ++       L  L GD  D +PG+PGIG KTA+ LL +YG+L  I   A++  
Sbjct: 188 EKYGLPADRAGEAYAELALLRGDPSDGLPGVPGIGEKTASKLLLQYGSLAAIRDAAAQQP 247

Query: 226 ---QKKRRENILEYAETARLSRKLVMLRTDVPITIP-LEHLILEDCNGPRLISFLKALEF 281
                +   +I+  ++    +  +V +R    + +   + +  E  +  RL      L  
Sbjct: 248 SPLPARAAASIVNSSDYLDAAWDVVWVRRAADVAVSGPDAVPAEPRDPQRLAELAVELRI 307

Query: 282 TKLINRVATTY 292
              + R+    
Sbjct: 308 GAQVERLLAAL 318


>gi|160938061|ref|ZP_02085418.1| hypothetical protein CLOBOL_02955 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439055|gb|EDP16810.1| hypothetical protein CLOBOL_02955 [Clostridium bolteae ATCC
           BAA-613]
          Length = 358

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 137/356 (38%), Gaps = 81/356 (22%)

Query: 3   KENHLFLVDGSSFIYRAFYATPL------------------LSRKHDGLPVNAIAGFCNM 44
            E    +VDGSS +   +YA                     +    DG   N I G    
Sbjct: 2   SERKFVIVDGSSLLSTCYYAVLPREIMFAKTDEEKEKHYGKILHASDGTYTNGIMGVLKA 61

Query: 45  LWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA 104
           +  LL+  +     ++ A +FD    TFR E+YPDYK  R + PE L  Q  L+    + 
Sbjct: 62  VVSLLKKQQ----PAYVAFVFDKTRDTFRRELYPDYKGTRSRTPEPLKQQFVLMERILEE 117

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLY------- 155
            G   +    +EADD   +  Y   ++   + +++ D D +QLVS       +       
Sbjct: 118 AGFKVLYSDRYEADDYAGSLVYKFREQ-VPMVVMTKDHDYLQLVSDEYNVRAWMVQARQE 176

Query: 156 ---------------------DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
                                   K  +   E V  + G+ P ++  L+ + GD+ DNIP
Sbjct: 177 KAEELCDKYYGLYGLDKASVNLPEKTFEFTAETVYSEEGVWPRQITDLKGIQGDTSDNIP 236

Query: 195 GIPGIGYKTAALLLQEYGNLENILINASRIKQ-KKRRENILEYAET-------------- 239
           G+ G+    A LLL EYG +E+I       +Q KK+ + + ++ +               
Sbjct: 237 GVRGV-ASAAPLLLGEYGTVEHIYEVIHEAEQDKKQLKELQDFWKNCLGISRSPYKSLTK 295

Query: 240 ------------ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
                       ARLS++L  ++TD+P+   LE      C    L  + + L+   
Sbjct: 296 TGEEGELCGEAAARLSKELATIKTDIPLDFELEDFSASCCREEVLKEWCRKLDIKT 351


>gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni]
 gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/235 (36%), Positives = 131/235 (55%), Gaps = 7/235 (2%)

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVH 700
           G K KTG   +T + +       +P+I  IL++R+L+K+ STY + L    +  +  R++
Sbjct: 1   GKKGKTGY--STDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIY 58

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
           + +    T TGRL+S +PNLQNIP      +  +  F++      IS DYSQIELR+LAH
Sbjct: 59  SSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAH 118

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
            ++   L   F N  DIH   A  IFG    + + + R  AK+INF +IYG+    L+  
Sbjct: 119 FSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQN 174

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
           L+I    A  YI++YF  F  I +Y E  KN  +QNG++ T+ GR+ ++D  N+ 
Sbjct: 175 LKIEAHLAKSYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAK 229


>gi|220912533|ref|YP_002487842.1| 5'-3' exonuclease [Arthrobacter chlorophenolicus A6]
 gi|219859411|gb|ACL39753.1| 5'-3' exonuclease [Arthrobacter chlorophenolicus A6]
          Length = 315

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 134/314 (42%), Gaps = 32/314 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L+D +S  +RAFY  P   R+ DG PVNA+ G  +M+ +L  +      A+H    +
Sbjct: 4   RLMLLDTASLYFRAFYGLPDTIRRPDGTPVNAVRGLLDMIARLTTDYH----ATHLVACW 59

Query: 66  DYP-AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           D      +R ++ P YKA+R             +P+ L  QLP++R A +  GI  +   
Sbjct: 60  DDDWRPQWRVDLVPTYKAHRVAEANPGGTDVEVVPDALEAQLPMIRKALELAGIAIVGAA 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEH 167
             EADD+I TY   A      V +++ D+DL Q+        +  T +     E    E 
Sbjct: 120 DHEADDVIGTY---ASHADMPVDVVTGDRDLFQVCDDERQVRVIYTARGMRNLEVCTEET 176

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           ++ K+ + P++      L GD+ D +PG+ GIG KTAA LL +YG L+ +L  A      
Sbjct: 177 IVAKYKVLPQQYADYATLRGDASDGLPGVAGIGEKTAASLLLKYGTLDALLAAAETPDGG 236

Query: 228 K---RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC----NGPRLISFLKALE 280
                R  +   A     +  +V L  D+ +    E   + +         L        
Sbjct: 237 VSAPVRAKLSAAAAYLEAAPAVVRLVRDLQLPAVEEAGAMLEPVAGDRRAELERIATDWN 296

Query: 281 FTKLINRVATTYDC 294
               + R+    D 
Sbjct: 297 LGGSVRRLLDALDL 310


>gi|24373120|ref|NP_717163.1| exonuclease IX [Shewanella oneidensis MR-1]
 gi|24347316|gb|AAN54607.1|AE015601_1 exodeoxyribonuclease IX [Shewanella oneidensis MR-1]
          Length = 236

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 6/221 (2%)

Query: 47  KLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           KLL+        +H AV++D   +++R ++YPDYK  R  +PE L   L  ++   Q   
Sbjct: 14  KLLRIHH----PTHVAVVWDGDEISWRKQLYPDYKKGRKPMPEPLAAGLIALQEHLQNLQ 69

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
           I +I     EADD+IAT      K      I+STDK   QL  P    +D   ++ ++I 
Sbjct: 70  IQSI-YAAAEADDVIATLATKTAKAQGEALIVSTDKGFSQLNHPRISQWDHFNQQYLNIA 128

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            + +K G+   + + L AL GDS + IPGIPGIG K+AA LL+ +  L  +  +   +  
Sbjct: 129 ELEQKLGVDRSQFLDLMALAGDSGNKIPGIPGIGPKSAAELLRTFRTLATLFSSLPNL-G 187

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
            K+ + + E  + ARLS KLV L+TD+P+ I L    +   
Sbjct: 188 AKQAKKLAEGRDMARLSYKLVQLQTDLPLNINLRDFRVNSP 228


>gi|218660193|ref|ZP_03516123.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 238

 Score =  205 bits (521), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 113/194 (58%), Positives = 143/194 (73%)

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           DIIATY   AE  G  VTI+S+DKDLMQLV+    +YD++K+++I I  V++KWG+PPEK
Sbjct: 1   DIIATYARQAEATGADVTIVSSDKDLMQLVTINVHMYDSMKDKQIGIPDVVEKWGVPPEK 60

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           M+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L  A+ IKQ KRRE IL   E
Sbjct: 61  MIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANIE 120

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            A+LSR LV LRTDVP+ + L+ L+LE  NGP+LI FLK +EFT L  RVA   DCDA+ 
Sbjct: 121 MAKLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTSLTRRVAEVCDCDASA 180

Query: 299 IEPVVLDINTTENK 312
           IEP V+ I      
Sbjct: 181 IEPAVVPIEWGAAA 194


>gi|60117328|gb|AAX14432.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 276

 Score =  205 bits (521), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 109/295 (36%), Positives = 166/295 (56%), Gaps = 26/295 (8%)

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            +D+M+MSY LD+G+  H I +I    LS   +                        I +
Sbjct: 2   VDDLMIMSYSLDTGKHDHSIPNIVAHNLSENAE------------------------IFS 37

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           +  ++ +   L+ +L  EKL  +YER DKP++ V+  ME  GI ++   L+++S +  + 
Sbjct: 38  AKTLIAIHEKLKQRLFQEKLFTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQV 97

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA-QDLEQINCGD 664
           +  LE+ IY+L+GE+FN++SPKQL D+LF K+      K+K     +T  + LE +    
Sbjct: 98  IAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEG 157

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
             I   IL WR LSK+K TY D+L   ++    R+HT +S  +T TGRL+S  PNLQNIP
Sbjct: 158 VEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQNIP 217

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-AHIAKITPLYQVFENSLDIH 778
           I+++ G  IR+AFI+P   K+ISADYSQIEL+ L     +   L ++F    +IH
Sbjct: 218 IRSEEGNLIRQAFIAPKGHKIISADYSQIELKPLGTRCQRCHHLKKLFATKQEIH 272


>gi|330445129|ref|ZP_08308781.1| 5'-3' exonuclease, C-terminal SAM fold family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489320|dbj|GAA03278.1| 5'-3' exonuclease, C-terminal SAM fold family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 258

 Score =  204 bits (520), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 88/266 (33%), Positives = 130/266 (48%), Gaps = 13/266 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P    K D +P  A    C  L K+++ S+     +H   +F
Sbjct: 4   HLVVIDALNLIRRVHAARPG---KPD-VPATAET-CCRALSKIIKISQ----PTHIVAVF 54

Query: 66  DYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R EI P YK  R  +P+ L+  + +++ A    GI ++   G EADD++AT
Sbjct: 55  DHHGDDRGWRAEILPHYKEGRKPMPDELMTGMDIIQDAFMNIGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+ PT  + D  +E  +D   + K++G+ P+K+    
Sbjct: 115 LALKVASRGEQVTIISTDKGYCQLLQPTLRIRDYFQERWLDSAFIEKEYGVAPDKLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            L G S   IPGI GIG K A  LLQ Y NLE IL  A  +  K  ++ I    E A  S
Sbjct: 175 GLAGISSSKIPGITGIGPKAAVELLQLYPNLEAILA-ADDLPAKW-KKKIDGNHEIALAS 232

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNG 269
           +    L+TD+ +   L+ +       
Sbjct: 233 KAASSLKTDLALGFNLQDIRYHVPQA 258


>gi|269964624|ref|ZP_06178862.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830523|gb|EEZ84744.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 676

 Score =  204 bits (520), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 103/580 (17%), Positives = 226/580 (38%), Gaps = 71/580 (12%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-SMRGFEDIMLMS---YV--- 495
           N     I   L+  F+      + H+ K D   +   G+   R + D  +     Y+   
Sbjct: 111 NVANPSIRPKLQSLFDLP-VTYVTHDAKPDLHCIWSLGLNESRYWWDTCIAEKARYLGQH 169

Query: 496 ---------------------LDSGRSSHDIASIAQKW-----LSYTRKEILKSRKSSIP 529
                                 +     + +A  AQ++     L+ + K ++ S +    
Sbjct: 170 NNAKSTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSGLASSAKLLMGSEQDCPS 229

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +   Q  + +I  + +    +L      ++  +      ++ P +   + +E  G +
Sbjct: 230 FSALQIEQTSQLSITVAKL----YLTQSQSCLMFGIHQHLISIEMPWVVTNAAIEWNGFK 285

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           + +D  +Q+     + L    + +  L     N +S  Q   +LF  L        K G 
Sbjct: 286 VCRDKCRQILEACERKLSLYSQGLAQLGMT--NPNSQHQ-KQVLFASLGL--LHHFKDGD 340

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
             +  +++   N   +P +  + ++  +  +       L   I     RVH+     +  
Sbjct: 341 DYSFQREMLSKNYALHPAVAFLAKYTHIDSVYKDVI--LQPGIVGSDGRVHSEQKQLTAA 398

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           TGR A++ PN+  +P        +R   ++     +   D +QIE+ I A +   + L +
Sbjct: 399 TGRQATVAPNILGLPA------VLRPLVVAQDGYVIGEVDLAQIEVAIAAGVYGDSNLVK 452

Query: 770 VFENSLDIHRMVAAEIFGVNIE------------KVSPQMRRHAKTINFSIIYGISPFRL 817
           ++    D++  +A E F   +E            +  P+ R   K     +IYGI+ F +
Sbjct: 453 MYNQG-DLYTAMAQEFFCEELEPEYSTCDSAVFKEKYPEKRAIMKQCTLGLIYGITSFGI 511

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
           A +L I  ++A + + ++   FP + + I+K   +    G+V T  G   +  ++++ + 
Sbjct: 512 AKKLNISVNKATELMDKFLSMFPELQKAIDKMPQYGALRGHVSTATGLHRY-RQLDAKRG 570

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
                 +   +N P+QG+AA + + A   +H+  + +     +++ +HD  VFE P+E +
Sbjct: 571 HT---EKNWMVNMPVQGTAAALFKAAGNRLHQLYKSYN--AILIVAMHDAFVFEAPKECL 625

Query: 938 TTASQIIVHSMEKACLPKI-NLRVPLKVNIKVSNNWQEEN 976
              S++    M +        L++   +NI   + W ++ 
Sbjct: 626 NEVSELTAQIMTQVVQEMYPQLKIRADINISQPDCWTKDG 665


>gi|71282215|ref|YP_270212.1| exonuclease IX [Colwellia psychrerythraea 34H]
 gi|123631612|sp|Q47YA8|XNI_COLP3 RecName: Full=Protein Xni
 gi|71147955|gb|AAZ28428.1| exodeoxyribonuclease IX [Colwellia psychrerythraea 34H]
          Length = 290

 Score =  204 bits (520), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 19/272 (6%)

Query: 6   HLFLVDGSSFIYRAF-------------YATPLLSRKHDGLPVNAIAGFCNMLWKLLQNS 52
           HL L+D  + I R +             +   L +     +  N      N L K++   
Sbjct: 4   HLILIDALNLIRRVYAVQERPFIQIKQDHDDELSASTLKQVLFNTQNTCVNALIKIIDQH 63

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           +     +H   +FD     +R +++  YK  R K+P+ L  +L  ++ A    G+ ++  
Sbjct: 64  Q----PTHALTVFDSQEPCWRYQLFEGYKKGRKKMPDHLANKLIDIQDAFMEQGVDSLTS 119

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
              EADD+IAT        G  VTIISTDK  + L+SP   +YD      +D EHV  K+
Sbjct: 120 DEDEADDLIATLAVKMALHGQKVTIISTDKGFLPLLSPNIHIYDYFNRRYLDEEHVQSKF 179

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            +   +++    LTGD+ + I G+ GIG  TAA LL +YG+L+ IL     +K     E 
Sbjct: 180 SVKTSQLIDFWTLTGDNTNKIEGVSGIGQVTAAKLLNQYGSLKAILEATD-LKDS-LAEK 237

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           + +  E   L+RKL+ L+ D+P+   L+ + L
Sbjct: 238 LTQSLEQMDLARKLLTLKQDIPLGFNLKDIRL 269


>gi|114563941|ref|YP_751455.1| exonuclease IX [Shewanella frigidimarina NCIMB 400]
 gi|122299153|sp|Q07ZE8|XNI_SHEFN RecName: Full=Protein Xni
 gi|114335234|gb|ABI72616.1| 5'-3' exonuclease [Shewanella frigidimarina NCIMB 400]
          Length = 255

 Score =  204 bits (520), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 79/266 (29%), Positives = 123/266 (46%), Gaps = 17/266 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK---ESIASHF 61
           N L ++DG + + R     P  +                   ++L  S+K   +   +H 
Sbjct: 2   NKLLIIDGLNLVRRIHAVLPDENDIASVQ------------ERVLAASKKMLLQHQPTHC 49

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V++D    ++R  +Y DYK  R  +P  L   L  ++       I + + Q  EADD+I
Sbjct: 50  MVVWDGNEPSWRKTLYSDYKKGRKPMPTALSDGLVNIKATLAEHDINSFDAQS-EADDVI 108

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT           V I+STDK   QL +    L+D   ++  D+E   KK GI   +M+ 
Sbjct: 109 ATIAMKMISNKGEVIIVSTDKGFSQLPTKNLTLWDHFNQQVFDVEQYEKKLGIEQYQMLD 168

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GDS + IPGI GIG K+AA LL ++  L N+  +   +  K+    + E  E AR
Sbjct: 169 FIALAGDSGNKIPGIMGIGPKSAADLLNKFRTLANLYRSLDNLGAKQAL-KLAEGKEIAR 227

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDC 267
           +S KL  L+ D+P+ I L+   +   
Sbjct: 228 ISYKLAQLQCDIPLNINLKQFRINPI 253


>gi|273067853|gb|ACZ97543.1| DNA polymerase I [Lactobacillus reuteri]
          Length = 286

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 110/208 (52%), Gaps = 6/208 (2%)

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDI 165
            ++  +EADDII T    A+  G+   I++ D+DL QL S  T +  T K     E    
Sbjct: 2   YDLANYEADDIIGTLAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTP 61

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
            HV +K GI P +++ ++AL GDS DN PG+  IG KTA  L++++G++E +  +   +K
Sbjct: 62  AHVEEKLGITPRQIIDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYEHIDELK 121

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
           + K +E+++E  E AR  + L  +  D PI I L  L  E      L+ F K + F   +
Sbjct: 122 KSKMKEHLIEDEEIARQCKTLATILRDAPIKISLADLKYEGPQNDELVKFYKEMGFKSFL 181

Query: 286 NRVATTY--DCDAANIEPVVLDINTTEN 311
            ++   +  D D A I P+   + T +N
Sbjct: 182 KKMDPDHVGDEDEATIAPISYTVLTKDN 209


>gi|15829191|ref|NP_326551.1| DNA polymerase I (POL I) [Mycoplasma pulmonis UAB CTIP]
 gi|17366622|sp|Q98PK2|EX53_MYCPU RecName: Full=5'-3' exonuclease
 gi|14090135|emb|CAC13893.1| DNA POLYMERASE I (POL I) [Mycoplasma pulmonis]
          Length = 297

 Score =  204 bits (519), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 140/297 (47%), Gaps = 12/297 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K     L+DG+  ++R++Y +            + I  F   + K+++N   E+     
Sbjct: 6   SKSEKFLLIDGNYLVHRSYYVSFKFKNNFR----STIYLFFQTIIKIIKNLNPEN----I 57

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            + FD    T+R+++  +YK+ R K+ +        +R    +  + +   +G EADD+I
Sbjct: 58  FIAFDEEGGTWRHDLCKEYKSQRSKMEDEFWNIFKAIREILDSINLNSGGFRGHEADDVI 117

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTT-CLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           AT T   + E   + I S DKDL+QL+       +D   +  I IE+  + + + P+++V
Sbjct: 118 ATITSKFKDEN-QIYIFSRDKDLLQLIDKNVYITHDNELKNLISIENFYQNFQLEPDQIV 176

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAE 238
             +A+ GDS DN+ GI GIG K A  LL  + +LE I  +     +  K +++ I +  E
Sbjct: 177 DFKAIAGDSSDNLKGIAGIGEKGAKNLLNNFKSLEKIFDSLESTNLISKAQKQKIRDGKE 236

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
            A   +K+V L  +VP+ +  E   ++      ++  L   +   ++ +     + D
Sbjct: 237 QALFLKKIVTLNKEVPMKLEKELFAIKININEEILEKLDKYDSRYVLKQFEKALESD 293


>gi|311742487|ref|ZP_07716296.1| 5'-3' exonuclease [Aeromicrobium marinum DSM 15272]
 gi|311314115|gb|EFQ84023.1| 5'-3' exonuclease [Aeromicrobium marinum DSM 15272]
          Length = 307

 Score =  204 bits (518), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 121/251 (48%), Gaps = 23/251 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+D +S  YRAF+  P   +  DG  VNA+ G  + +  L+     E++ + +   
Sbjct: 3   GRLLLLDTASLYYRAFFGLPDTLKAPDGTVVNAVRGLVDFVATLVNREGAEAVVACWD-- 60

Query: 65  FDYPAVTFRNEIYPDYKANR--------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            D     +R E+ P YK  R         + P+ L PQ+PL+  A    GIP +     E
Sbjct: 61  -DDWRPAWRVELVPTYKTQRLADGSSDAEQTPDDLSPQVPLIAEALTLLGIPVVGAPDAE 119

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLY---DTVKEEKIDIEHVIK 170
           ADD+I T     ++    V +++ D+DL QLV        LY      K +++D   + +
Sbjct: 120 ADDVIGTL---VDRWDGPVDVVTGDRDLFQLVDDAAAHRVLYTARGVSKLDEVDEAWIRE 176

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QK 227
           K+ I   + V    L GD+ D +PG+ GIG KTAA LL  +G+L+ IL  A         
Sbjct: 177 KYDIDAARYVDYAVLRGDASDGLPGVAGIGEKTAAALLGAFGDLDGILAAAQDPSTAITP 236

Query: 228 KRRENILEYAE 238
           + R +++E A+
Sbjct: 237 RPRRSLVEQAD 247


>gi|325676816|ref|ZP_08156489.1| 5'-3' exonuclease [Rhodococcus equi ATCC 33707]
 gi|325552364|gb|EGD22053.1| 5'-3' exonuclease [Rhodococcus equi ATCC 33707]
          Length = 317

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 88/320 (27%), Positives = 147/320 (45%), Gaps = 30/320 (9%)

Query: 1   MQK-ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M++    L L+DG+S  +RAFYA P      DG PVNA+ GF +M+  L+  ++   +A 
Sbjct: 1   MRRMSGPLLLLDGASLWFRAFYALPESMTAPDGRPVNAVRGFTDMVAALITRTQPSRLAV 60

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAI 110
              + +      FR +  P YKA+R          ++P+ L PQ+ ++     A GI   
Sbjct: 61  CLDLDW---RPQFRVDAVPSYKAHRVAEGSDGSAEEVPDTLTPQVDMIMDVLDAAGIATA 117

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKI 163
              G EADD++ T    A+++   V ++S D+DL+Q+V+                K E  
Sbjct: 118 GAAGLEADDVLGTLA--AQEKTDTVVVVSGDRDLLQVVADDPVAVRVLYVGRGLAKAELF 175

Query: 164 DIEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
             E V  K+G+P ++       L  L GDS D +PG+ G+G KTA+ LL  +G+L ++  
Sbjct: 176 GPEEVAAKYGVPADRAGAAYAELALLRGDSSDGLPGVKGVGEKTASTLLLRHGSLRDLRA 235

Query: 220 NASRIKQ---KKRRENILEYAETARLSRKLVMLRTDVPITIP-LEHLILEDCNGPRLISF 275
            A+       K  R  +   A+    +  +V + TD  + +   + L     +  RL   
Sbjct: 236 AAADPAGDVAKGIRAKLDAAADYLDAALPVVRVVTDADVRLSRPDVLPRVPADSARLDKV 295

Query: 276 LKALEFTKLINRVATTYDCD 295
              L   + + R+ T    +
Sbjct: 296 AAELGIERSVARLLTAMATE 315


>gi|300786751|ref|YP_003767042.1| potential 5'-3' exonuclease [Amycolatopsis mediterranei U32]
 gi|299796265|gb|ADJ46640.1| potential 5'-3' exonuclease [Amycolatopsis mediterranei U32]
          Length = 314

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 133/312 (42%), Gaps = 31/312 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +S  +RAF+A P   R  DG  VNA+ GF + + ++L + R   +       + 
Sbjct: 5   LALLDSASLYFRAFFALPDSMRAADGTQVNAVRGFADTIARILTDRRPARLVCCLDADW- 63

Query: 67  YPAVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                FR ++ P YKA+R            ++P+ L PQ+P++    +AFG    E  G+
Sbjct: 64  --RPKFRTDLLPSYKAHRVAEETGSGPDVEEVPDTLTPQVPIILDLLEAFGFATAEAAGY 121

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-------SPTTCLYDTVKEEKIDIEHV 168
           EADD+I        ++   V +I+ D+DL QLV       S         K E +    +
Sbjct: 122 EADDVIGALATR--EKTDPVEVITGDRDLFQLVRSEPSPASVIYVGKGWAKAEVLGPAEI 179

Query: 169 IKKWGIPPE----KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY---GNLENILINA 221
            +++ +P E        +  + GD  D +PG+ GIG KTAA L+ ++     L       
Sbjct: 180 AERYSLPRETAGPAYADMSVMRGDPSDGLPGVAGIGEKTAAKLITQFGSLDALLAAAAAG 239

Query: 222 SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP-LEHLILEDCNGPRLISFLKALE 280
                 K R  + + A+   ++  +V +  D P+     + +     +  R+    +   
Sbjct: 240 DSALPLKTRLRLKDAADYLAVAPTVVRVAVDAPVEQSRPDTVPATPADPERVAELAERWN 299

Query: 281 FTKLINRVATTY 292
               + R+    
Sbjct: 300 LGNSVERLLKAL 311


>gi|258653118|ref|YP_003202274.1| 5'-3' exonuclease [Nakamurella multipartita DSM 44233]
 gi|258556343|gb|ACV79285.1| 5'-3' exonuclease [Nakamurella multipartita DSM 44233]
          Length = 333

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 53/334 (15%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+D +   +RAFYA P  +   DG P+NA+ G  +++ +++ ++R   + +   + + 
Sbjct: 2   LQLLDLAGIYFRAFYAVPTSTTAPDGRPMNAVRGSLDIIARVMADARPTRVIACLDLDW- 60

Query: 67  YPAVTFRNEIYPDYKANR-----------------------------------PKIPEML 91
                +R E+   YK +R                                     +P+ L
Sbjct: 61  --RPAWRVELIESYKTHRVLEPGSAQAASLAAAADALAAATPHSGTAGPSADIEVVPDEL 118

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-- 149
            PQ+P++     A GI      GFEADD+I T  +   +    V +++ D+DL Q+    
Sbjct: 119 SPQVPILLDTLAAIGITVAGAPGFEADDVIGTLAH--AESVDPVEVVTGDRDLFQVARDD 176

Query: 150 --PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
             P T  Y      K +      V  ++GIP +      AL GD  D +PG+ G+G KTA
Sbjct: 177 APPVTVRYIGAGMSKAKVYSAADVAARYGIPADSYADFAALRGDPSDGLPGVAGVGEKTA 236

Query: 205 ALLLQEYGNLENILINASRIK---QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           A L+  +G++E ++              R  +    +   ++ ++V +  D P+++    
Sbjct: 237 ATLIGRFGSIEGLIEALDARSTGLAPGVRSKLAAARDYLLVAPRVVRVAQDAPVSVEPAG 296

Query: 262 ---LILEDCNGPRLISFLKALEFTKLINRVATTY 292
              L  E  +   L   ++A      +NR+  T 
Sbjct: 297 DGRLPAEPVDPQALSDLIRAHGIGGPVNRLLQTL 330


>gi|152981478|ref|YP_001351852.1| 5'-3' exonuclease [Janthinobacterium sp. Marseille]
 gi|151281555|gb|ABR89965.1| 5'-3' exonuclease [Janthinobacterium sp. Marseille]
          Length = 261

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 83/261 (31%), Positives = 126/261 (48%), Gaps = 8/261 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L  +DG + + R + A              A+        KLL       + +H    
Sbjct: 2   GKLLAIDGLNIVRRVYEANMEEDTAAKADA--ALRHSLASFRKLLNT----HLPTHVLPA 55

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD+   T+R+++YP Y+ NR  +PE+L  +LP   +     G+  + +   EADD+IAT 
Sbjct: 56  FDFGGHTWRHDLYPRYRENRAPMPEVLRERLPDFYVQLTELGLHVVSVPEVEADDVIATG 115

Query: 125 TYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 EG     I STDKDL  L+     ++D  K E  D + V  K+G+ PE +  L 
Sbjct: 116 VLRWLGEGRGEAIIASTDKDLHTLIEHGAVIWDHFKGEWHDSKWVESKFGVSPEMLTDLL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD  D+IPG+  +G KTAA LLQ YGN++ I+  A  +K     E + +  +   +S
Sbjct: 176 ALMGDVSDSIPGVSKVGVKTAAKLLQSYGNIDRIMAGAGILKD-TLGEKLRKDKDQLYMS 234

Query: 244 RKLVMLRTDVPITIPLEHLIL 264
           R+LV L+ DV + +    L  
Sbjct: 235 RQLVALKDDVRMGVTWNMLAF 255


>gi|289644683|ref|ZP_06476745.1| 5'-3' exonuclease [Frankia symbiont of Datisca glomerata]
 gi|289505500|gb|EFD26537.1| 5'-3' exonuclease [Frankia symbiont of Datisca glomerata]
          Length = 324

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 130/306 (42%), Gaps = 28/306 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           + L L+D  S  +RA+Y  P   R   G PVNA+ G  + L + +   R   + + F   
Sbjct: 18  DRLMLLDTPSLYFRAYYGVPRSVRAGGGTPVNAVRGLLDTLTRQIAEIRPTRLVACFDAD 77

Query: 65  FDYPAVTFRNEIYPDYKANR---------------PKIPEMLLPQLPLVRLATQAFGIPA 109
           +      FR  +   YKA+R                 +P  L  QLP++     A GIP 
Sbjct: 78  W---RPRFRVALLASYKAHRVAAGGTGGAEGAGWIEDVPAELTAQLPIIDAVLDAVGIPR 134

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIE 166
           +   G+EADD+I T       E   V +++ D+DL QLV    P    Y   +   ID  
Sbjct: 135 VSAAGYEADDVIGTLAARGRAE---VDVLTGDRDLFQLVDDSWPVRVRYAVERFAVIDEA 191

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL--ENILINASRI 224
            V  ++GIP         L GD  D +PG+PGIG KTAA LL+ +G+L           I
Sbjct: 192 AVTSRFGIPGRAYADFAVLRGDPSDGLPGVPGIGVKTAAALLRTFGSLAAVRAAAARGEI 251

Query: 225 KQ--KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
                  R+ I+E A     +  +V + TDV +    + L  +  +   L +  +     
Sbjct: 252 AGFPGGSRQRIVEAAAYLDAAVPVVRVVTDVALPPVADRLPAQPADRAGLAALARRWGVE 311

Query: 283 KLINRV 288
              +R+
Sbjct: 312 NACDRL 317


>gi|317507055|ref|ZP_07964819.1| 5'-3' exonuclease [Segniliparus rugosus ATCC BAA-974]
 gi|316254658|gb|EFV13964.1| 5'-3' exonuclease [Segniliparus rugosus ATCC BAA-974]
          Length = 325

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 130/300 (43%), Gaps = 43/300 (14%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVDG+   +RAFYA P      DG PVNA+ GFC+ML  L++  R   +A    + +  
Sbjct: 1   MLVDGAGLWFRAFYALPESITAPDGRPVNAVRGFCDMLAALVERDRPNRLAVCLDLDW-- 58

Query: 68  PAVTFRNEIYPDYKANRPKI---------------PEMLLPQLPLVRLATQAFGIPAIEI 112
               FR E+ P+YKA+R                  PE L PQ+ ++     A G+     
Sbjct: 59  -RPRFRVELLPEYKAHRVAPGGDPDAPGAGPGEAEPESLGPQVEMILALLDAAGVATAGA 117

Query: 113 QGFEADDIIATYTYI-------AEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTV 158
           +GFEADD+IAT             +    V +++ D+DL+QL +                
Sbjct: 118 EGFEADDVIATLAARERRSASSLNRREAGVVVVTGDRDLLQLAADAPVPVQVRYLGRGVA 177

Query: 159 KEEKIDIEHVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           K E      V  ++ +P E+       L  L GD  D +PG+ GIG KTAA L+  +G L
Sbjct: 178 KSELFGPAEVADRYSLPLERAGAAYAELAVLRGDPSDGLPGVAGIGEKTAAKLISAFGGL 237

Query: 215 ENILINA-------SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
              L  A       +R+   +    ++   +    + ++V+ R D P+ +  +  I    
Sbjct: 238 APALEAAKRGEVSSARVASARVESALVAAEDYIGRAVRVVVTREDAPVELDRDDAIATGP 297


>gi|84394481|ref|ZP_00993194.1| exodeoxyribonuclease IX [Vibrio splendidus 12B01]
 gi|84374896|gb|EAP91830.1| exodeoxyribonuclease IX [Vibrio splendidus 12B01]
          Length = 257

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 126/262 (48%), Gaps = 13/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P  +     +             + L    KES  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQPDPTDIARTI---------TTTARTLNRILKESKPTHIIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK NR  +PE L+  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQDRGWRAEVLPAYKQNRKPMPEPLMKGLDAIQQAWWELGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+SPT  + D  +   +D   +  ++G+ PE++    
Sbjct: 115 LAKKVADHGETVTIISTDKGYCQLLSPTLQIRDYFQHRWLDKPFIEAEFGVKPEQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PGIPG+G K A  +L  Y ++E      +    KK R+   E+ E+AR+ 
Sbjct: 175 GLTGVSSSQVPGIPGVGPKAAKEILTTYPDIETAF--LAEDLPKKYRKKFDEHIESARVC 232

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           + +  L+TD+ +   L+ +  E
Sbjct: 233 KLVSALKTDIDLGFNLQDIRYE 254


>gi|312139733|ref|YP_004007069.1| 5'-3' exonuclease [Rhodococcus equi 103S]
 gi|311889072|emb|CBH48385.1| 5'-3' exonuclease [Rhodococcus equi 103S]
          Length = 314

 Score =  203 bits (516), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 144/315 (45%), Gaps = 29/315 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  +RAFYA P      DG PVNA+ GF +M+  L+  ++   +A    + 
Sbjct: 3   GPLLLLDGASLWFRAFYALPESMTAPDGRPVNAVRGFTDMVAALITRTQPSRLAVCLDLD 62

Query: 65  FDYPAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +      FR +  P YKA+R          ++P+ L PQ+ ++     A GI      G 
Sbjct: 63  W---RPQFRVDAVPSYKAHRVAEGSDGSAEEVPDTLTPQVDMIMDVLDAAGIATAGAAGL 119

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHV 168
           EADD++ T    A+++   V ++S D+DL+Q+V+                K E    E V
Sbjct: 120 EADDVLGTLA--AQEKTDTVVVVSGDRDLLQVVADDPVAVRVLYVGRGLAKAELFGPEEV 177

Query: 169 IKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
             K+G+P ++       L  L GDS D +PG+ G+G KTA+ LL  +G+L ++   A+  
Sbjct: 178 AAKYGVPADRAGAAYAELALLRGDSSDGLPGVKGVGEKTASTLLLRHGSLRDLRAAAADP 237

Query: 225 KQ---KKRRENILEYAETARLSRKLVMLRTDVPITIP-LEHLILEDCNGPRLISFLKALE 280
                K  R  +   A+    +  +V + TD  + +   + L     +  RL      L 
Sbjct: 238 AGDVAKGIRAKLDAAADYLDAALPVVRVVTDADVRLSRPDVLPGVPADSARLDKVAAELG 297

Query: 281 FTKLINRVATTYDCD 295
             + + R+ T    +
Sbjct: 298 IERSVARLLTAMATE 312


>gi|86146929|ref|ZP_01065248.1| exonuclease IX [Vibrio sp. MED222]
 gi|85835381|gb|EAQ53520.1| exonuclease IX [Vibrio sp. MED222]
          Length = 257

 Score =  203 bits (516), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 127/262 (48%), Gaps = 13/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R     P  +     +           L ++L  S+     +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQPDPTDIARTITTT-----ARTLNRILNESK----PTHIIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK NR  +PE L+  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQDRGWRAEVLPAYKQNRKPMPEPLMKGLDAIQQAWWELGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+SPT  + D  +   +D   +  ++G+ PE++    
Sbjct: 115 LAKKVADHGETVTIISTDKGYCQLLSPTLQIRDYFQHRWLDKPFIEAEFGVKPEQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PGIPGIG K A  +L  Y ++E      +    KK R+   E+ E+AR+ 
Sbjct: 175 GLTGVSSSQVPGIPGIGPKAAKEILTTYPDIETAF--LAEDLPKKYRKKFDEHIESARVC 232

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           + +  L+TD+ +   L+ +  E
Sbjct: 233 KLVSALKTDIDLGFNLQDIRYE 254


>gi|331703109|ref|YP_004399796.1| DNA polymerase I, 5' 3' exonuclease [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328801664|emb|CBW53817.1| DNA polymerase I, 5' 3' exonuclease [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 303

 Score =  202 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 148/306 (48%), Gaps = 14/306 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            +   + L+DG   +++ +Y T    ++S+  DG+ +NAI  F   + K +Q+ R  S  
Sbjct: 4   NETKPILLIDGYHLLHKGYYGTLKRTIVSKNKDGIVINAIYSFVANILKFVQSDRYHS-- 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
               V FD+    +R E+Y +YKA R   P  L+PQL + R    +  I   E   +E D
Sbjct: 62  --VIVAFDFDENCWRKELYSEYKAKRKPTPIDLVPQLQIARDFLTSANISWYEKYNYEGD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGI 174
           D+I +   IA K G+ V I++ DKD+ QLV+  T +   +    K + I  + V + +  
Sbjct: 120 DVIGSICRIANKLGYDVCILTNDKDIYQLVNNKTSIITNISKKEKTKIIKPQQVYEHFLC 179

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P ++  ++A+ GD  DNI G+  I  K A  L+ +Y N+ENIL + + + +   +  I 
Sbjct: 180 QPNQVADIKAILGDQSDNIKGVKYIKRKQAENLINKYENVENILAHINELNEP-LKTIIS 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  +    ++K+  + T+V +     +         RLI FLK  E    I  +    D 
Sbjct: 239 ENKQLIIDNKKITKILTNVKLGRI--NFKPTKITYYRLIRFLKEQEMYAFIKPIRRYLDR 296

Query: 295 DAANIE 300
              N+E
Sbjct: 297 TNKNLE 302


>gi|309807617|ref|ZP_07701563.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308169138|gb|EFO71210.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 341

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 4/232 (1%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           +P+++      GI + E+  +EADDI+ T   +    GF VTI++ D+DL QL      +
Sbjct: 1   MPIIKELLTYLGIKSYELSNYEADDILGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTV 60

Query: 155 YDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
             T K     E    +H+ + +G+ P++ + ++AL GD+ DN PG+  +G KTA+ L+ +
Sbjct: 61  MVTKKGVNDLEIYTPKHMQEVYGVTPKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQ 120

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           YG++EN+    +++K  K +E ++     A L +KL  +    P+ + ++ L L+     
Sbjct: 121 YGSVENLYEKIAQVKASKIKEYLIRDKNNAILGKKLATIDCTSPVDLKIDDLELQAQQLT 180

Query: 271 RLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDR 322
           +L SF + L F K ++ +    + D    +    +I   +N      T+ D 
Sbjct: 181 QLRSFYERLGFKKFLSELPDVEEIDNKVQDECHYEILDKDNLSEIFATDFDH 232


>gi|325963149|ref|YP_004241055.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469236|gb|ADX72921.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 311

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 136/314 (43%), Gaps = 32/314 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RAFY  P   R+ DG PVNA+ G  +M+ +L  +      A+H    +D 
Sbjct: 1   MLLDTASLYFRAFYGLPDTIRRPDGTPVNAVRGLLDMIARLTTDYH----ATHLIACWDD 56

Query: 68  P-AVTFRNEIYPDYKANR-----------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
                +R ++ P YKA+R             +P+ L  QLP++R      GI  +     
Sbjct: 57  DWRPQWRVDLLPTYKAHRVAEAVTDAPDVEVVPDALEAQLPMIRHVLGLAGIAVVGAAHH 116

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVI 169
           EADD++ TY   A      V +++ D+DL Q+        +  T +     E I  E V+
Sbjct: 117 EADDVVGTY---ASHASLPVDVVTGDRDLFQVCDDERQVRVIYTARGMKNLEVITEEVVV 173

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI---KQ 226
            K+ + P++      L GD+ D +PG+ GIG KTAA LL ++G LE +L  A        
Sbjct: 174 AKYRVLPQQYADYATLRGDASDGLPGVAGIGDKTAASLLLKHGTLEGLLEAAEDSCSGLS 233

Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI- 285
              R  +   A     +  +V L  D+ +  P +             + L+ L     + 
Sbjct: 234 APVRAKLAAAAGYLSAAPAVVRLVRDLDLPSPEQAGAKLSPVSGEPRAELERLAVEWNLG 293

Query: 286 ---NRVATTYDCDA 296
               R+ T  D  A
Sbjct: 294 GSVRRLLTALDSRA 307


>gi|167393523|ref|XP_001740613.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165895221|gb|EDR22960.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 226

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           ++LRILA+  K   L + F++++DIH+++AA     N+  ++   RR AKTI +  IYGI
Sbjct: 1   MKLRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVNDITDGERRKAKTIVYGCIYGI 60

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
            PF LA QL I   E+  +++ +  +FP   ++ E+        G+V TI  RR   + +
Sbjct: 61  GPFSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIITNASTTGFVHTINNRRRRINNL 120

Query: 873 -NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            +S        ++R A+N+PIQG+AADI +  MI + K +    L  ++LL IHDE+V E
Sbjct: 121 TDSSDKKTLAESKRIAVNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLE 180

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           VP+  +      + + ME      + L VPL V ++    W   +
Sbjct: 181 VPDHLLDEVCVTLKYLMEH----IVQLEVPLVVTVETGKKWGSLH 221


>gi|255579458|ref|XP_002530572.1| DNA polymerase I, putative [Ricinus communis]
 gi|223529871|gb|EEF31802.1| DNA polymerase I, putative [Ricinus communis]
          Length = 246

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/216 (32%), Positives = 116/216 (53%), Gaps = 10/216 (4%)

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
            FR+ +YP YK+NRP  P+ ++  L  ++ + +A  I  IE+ G EADD+I T    +  
Sbjct: 2   NFRHTLYPSYKSNRPPTPDTIIQGLQYLKASIRAMSIKVIEVPGVEADDVIGTLATRSVD 61

Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG-IPPEKMVCLQAL 185
            GF V ++S DKD  Q++SP+  L              +E   K +G + P + V + AL
Sbjct: 62  AGFKVRVVSPDKDFFQILSPSLRLLRIAPRGFEMVSFGMEDFAKLYGELRPSQFVDVMAL 121

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            GD  DNIPG+ GIG   A  L+ ++G LEN+L    +++ ++ RE +   A+ A LS+ 
Sbjct: 122 MGDKSDNIPGVEGIGTVYAVELITKFGTLENLLECVDKVEGQRIREALKANADQAVLSKN 181

Query: 246 LVMLRTDVP---ITIPLEHLILEDC--NGPRLISFL 276
           L +LR+D+P   +    +    E    +G + ++ L
Sbjct: 182 LALLRSDLPFYMVPFSTKDFTFEKPEDDGEKFMNLL 217


>gi|222871907|gb|EEF09038.1| predicted protein [Populus trichocarpa]
          Length = 161

 Score =  202 bits (514), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 4/165 (2%)

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +S F LA+ L I R  A  YI RYF R+PG+  Y+E+T+   R+ GYVET+FGRR+   +
Sbjct: 1   MSAFGLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWLPD 60

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           IN      R   ERAAINAP+QG+AAD+ + +MI+V   LE  +L T+ ++Q+HDELV E
Sbjct: 61  INGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQDWLEGERLGTRQIMQVHDELVLE 120

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           VP+ E+      +   M         L VPL   +    NW+E +
Sbjct: 121 VPQAELELVRVKLPELMCAVA----TLNVPLVAEVGSGANWEEAH 161


>gi|108806503|ref|YP_650419.1| exonuclease IX [Yersinia pestis Antiqua]
 gi|123072951|sp|Q1CAP8|XNI_YERPA RecName: Full=Protein Xni
 gi|108778416|gb|ABG12474.1| exodeoxyribonuclease IX [Yersinia pestis Antiqua]
          Length = 230

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 16/227 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   +    + L +L+Q+S+     SH   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CVKACQHALQQLIQHSQ----PSHAVAVF 49

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++  PDYKA R  +P+ L  ++PL+R A    G+      G EADD+ AT
Sbjct: 50  DEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 110 LVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGVLPRQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
            L G S   IPG+ G+G KTA LLLQ+   LE +  N   I + +RR
Sbjct: 170 GLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPECQRR 216


>gi|226359985|ref|YP_002777763.1| 5'-3' exonuclease [Rhodococcus opacus B4]
 gi|226238470|dbj|BAH48818.1| putative 5'-3' exonuclease [Rhodococcus opacus B4]
          Length = 321

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 90/321 (28%), Positives = 142/321 (44%), Gaps = 29/321 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  +RA+YA P      DG  VNA+ GF +M+  L+   +   +A    + 
Sbjct: 6   GPLLLLDGASLWFRAYYALPDSITSPDGRSVNAVRGFTDMVAALITKHQPSRLAVCLDLD 65

Query: 65  FDYPAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +      FR E  P YKA+R          ++P+ L PQ+P++     A GI     +G 
Sbjct: 66  W---RPAFRVEAVPTYKAHRVAEDTGGAEEEVPDTLSPQVPMILDVLAATGIATAGAEGL 122

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHV 168
           EADD++ T    A +   AV +++ D+DL+Q+V+                K E +  E V
Sbjct: 123 EADDVLGTLA--ATETRDAVIVVTGDRDLLQVVTDDPVPVRVLYVVRGLAKAELLGPEEV 180

Query: 169 IKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA--- 221
             K+G+P ++       L  L GDS D +PG+ GIG KTA+ L+ +YG+L  +   A   
Sbjct: 181 AAKYGVPADRAGEAYAELALLRGDSSDGLPGVKGIGEKTASSLIMQYGSLAALRAAAVDP 240

Query: 222 SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALE 280
                K  R      A+    +  +V +  D  + +  E  L  +  +  RL      L 
Sbjct: 241 ESDMAKGARAKFAAAADYLDAALPVVRVVRDAEVELSREDTLPAKPVDADRLGRLADELG 300

Query: 281 FTKLINRVATTYDCDAANIEP 301
               + R+       AA   P
Sbjct: 301 IENSVGRLTAAMKKVAAARVP 321


>gi|320183564|gb|EFW58410.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 202

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 1/193 (0%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           +R++  PDYKA RP +PE L  ++P +R A +  G+P       EADD+ AT      + 
Sbjct: 9   WRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSSNEADDLAATLAVKVTQA 68

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           G   TI+STDK   QL+SPT  + D  ++  +D   + K++G+ P+++     L G S  
Sbjct: 69  GHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSS 128

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
            +PG+ GIG K+A  LL E+ +LE I  N   + +K  R+ +  + E A L R +  L+T
Sbjct: 129 KVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAFLCRDIARLQT 187

Query: 252 DVPITIPLEHLIL 264
           D+ I   L+ L L
Sbjct: 188 DLHIDGNLQQLRL 200


>gi|313664974|ref|YP_004046845.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma leachii PG50]
 gi|312949786|gb|ADR24382.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma leachii PG50]
          Length = 304

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            +   + L+DG   +++ +Y T     +S+  DG+ +NAI  F   + K + +++  S  
Sbjct: 4   NETKPILLIDGYHLLHKGYYGTLKRKKVSKNKDGIIINAIYSFVANILKFINSNQYHS-- 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
               V FD     +R +IYP+YKA R   P  L+PQL + R    A  I   E   +E D
Sbjct: 62  --VIVAFDVDDNCWRKQIYPEYKAKRKPTPNDLIPQLQIARDFLIASNITWYEKSNYEGD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGI 174
           DII +   IA K G+ V I++ DKD+ QLV+  T +   V    K + I  + V + +  
Sbjct: 120 DIIGSICKIANKLGYEVQILTNDKDIYQLVNQKTSIITNVSKKEKTKIIREKEVYEHFLC 179

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P ++  ++A+ GD  DNI GI  I  K A  L+ +Y N+E+IL + + + +   +  I 
Sbjct: 180 KPNQVADIKAILGDQSDNIKGIKYIKRKQAEALINKYENVESILDHINELNEP-LKTIIS 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA---LEFTKLINRVATT 291
           E  +    ++K+  + T+V +     +         +LI FLK      F +LI +    
Sbjct: 239 ENKQLIIDNKKITKILTNVKLGRI--NFKPNKVTYYKLIRFLKEQEMYAFIRLIRKYLEK 296

Query: 292 YDCDAAN 298
            +    N
Sbjct: 297 SNKKTVN 303


>gi|83319696|ref|YP_424044.1| 5-3 exonuclease family protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283582|gb|ABC01514.1| 5-3 exonuclease family protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 304

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 143/305 (46%), Gaps = 14/305 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            +   + L+DG   +++ +Y T     +S+  DG+ +NAI  F   + K + + +  S  
Sbjct: 4   NETKPILLIDGYHLLHKGYYGTLKRKKVSKNKDGIIINAIYSFVANILKFINSDQYHS-- 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
               V FD     +R +IYP+YKA R   P  L+PQL + R    A  I   E   +E D
Sbjct: 62  --VIVAFDVDDNCWRKQIYPEYKAKRKPTPNDLIPQLQIARDFLIASNITWYEKSNYEGD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGI 174
           DII +   IA K G+ V I++ DKD+ QLV+  T +   V    K + I  + V + +  
Sbjct: 120 DIIGSICKIANKLGYEVQILTNDKDIYQLVNQKTSIITNVSKKEKTKIIREKEVYEHFLC 179

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P ++  ++A+ GD  DNI GI  I  K A  L+ +Y N+ENIL + + + +   +  I 
Sbjct: 180 KPNQVADIKAILGDQSDNIKGIKYIKRKQAEALINKYENVENILDHINELNEP-LKTIIS 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
           E  +    ++K+  + T+V +     +         +LI FLK  E    I  +    + 
Sbjct: 239 ENKQLIIDNKKITKILTNVKLGRI--NFKSNKVTYYKLIRFLKEQEMYAFIRPIRKYLEK 296

Query: 295 DAANI 299
                
Sbjct: 297 SNKKT 301


>gi|114592896|ref|XP_001147297.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 311

 Score =  200 bits (509), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 151/345 (43%), Gaps = 54/345 (15%)

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            L  ++  L+ P+I +++ ME   IQ++++ +++ SA +   L  LE+  + ++GE+F +
Sbjct: 9   GLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLI 68

Query: 624 SSPKQLGDILFTKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
            S  QL +ILF KLK        S  +T   ++ +T++ +       +PI          
Sbjct: 69  MSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVNIQGISKHPI---------- 118

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
                                         T        E  +  I  +          F
Sbjct: 119 ----------------------------QITTPKNFKGKEDKILTISPR--------AMF 142

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSP 795
           +S      ++AD+SQIELRILAH++    L ++F+ S   D+   + ++   V +E+V+ 
Sbjct: 143 VSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTH 202

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R   K + ++++YG    RLA  L +P  EAA +++ +  ++  I ++         Q
Sbjct: 203 ADREQTKKVVYAVVYGAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIAQCHQ 262

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            G V +I GRR     I++    +R   ER A+N  +Q  +  + 
Sbjct: 263 TGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQAQSQHLC 307


>gi|256384342|gb|ACU78912.1| DNA polymerase I, 5'-3' exonuclease [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|256385174|gb|ACU79743.1| DNA polymerase I, 5'-3' exonuclease [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|296455437|gb|ADH21672.1| dna polymerase I, 5'-3' exonuclease [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 303

 Score =  200 bits (509), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 147/309 (47%), Gaps = 20/309 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            +   + L+DG   +++ +Y T    ++S+  DG+ +NAI  F   + K +Q+ R  S  
Sbjct: 4   NETKPILLIDGYHLLHKGYYGTLKRTIVSKNKDGIVINAIYSFVANILKFVQSDRYHS-- 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
               V FD+    +R E+Y +YKA R   P  L+PQL + R    +  I   E   +E D
Sbjct: 62  --VIVAFDFDENCWRKELYSEYKAKRKPTPIDLVPQLQIARDFLTSANISWYEKYNYEGD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGI 174
           D+I +   IA K G+ V I++ DKD+ QLV+  T +   +    K + I  + V + +  
Sbjct: 120 DVIGSICRIANKLGYDVCILTNDKDIYQLVNNKTSIITNISKKEKTKIIKPQQVYEHFLC 179

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P ++  ++A+ GD  DNI G+  I  K A  L+ +Y N+ENIL + + + +   +  I 
Sbjct: 180 QPNQVADIKAILGDQSDNIKGVKYIKRKQAENLINKYENVENILAHINELNEP-LKTIIS 238

Query: 235 EYAETARLSRKLVMLRTDVPI---TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
           E  +    ++K+  + T+V +         +         LI FLK  E    I  +   
Sbjct: 239 ENKQLIIDNKKITKILTNVKLGRINFKPTKITYYG-----LIRFLKEQEMYAFIKPIRRY 293

Query: 292 YDCDAANIE 300
            D    N++
Sbjct: 294 LDRTNKNLK 302


>gi|29366786|ref|NP_813726.1| gp11 [Streptomyces phage phiBT1]
 gi|29243106|emb|CAD80134.1| gp11 [Streptomyces phage phiBT1]
          Length = 624

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/647 (17%), Positives = 213/647 (32%), Gaps = 95/647 (14%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
              D+++++         +    T  +D +              +  T+ +   I  +L 
Sbjct: 20  TDADLREFMHWARNKPELALDTETTGLDIYAP-----GYGLRTVQFGTTHEAWVIHYELR 74

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFE---- 487
               +           +L +  +F          HN  +D LVL     +S+        
Sbjct: 75  GRFKE-------AADYVLKHCPRFL--------IHNAMFDWLVLDAHADVSLESLAPRTI 119

Query: 488 DIMLMSYVLDSGRSSHD-----IASIAQKWLSYTRKEILK---------SRKSSIPIDKI 533
           D  + + ++D  +         +  ++  ++  +  +                +     I
Sbjct: 120 DTKIKATLIDPRQPQEGGIGTGLKPLSAFYVDPSAPDTQGDLTAVFRSLGLTKATGFAGI 179

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQ 589
                  +     +VI      L P L VE     +       +  +  + + M+  G+ 
Sbjct: 180 DLRHPTYNLYAGLDVIYT--ARLNPCLDVEHERLGVRAALTDYEHEIAYMCAYMQRAGLV 237

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D + +  +   + +              E  N  S  Q+ + L   +       T  G 
Sbjct: 238 LDLEYVDTLRRMLREEEDKYATIAASWGVESVN--SGAQVSEALLA-MGETLTETTDGGA 294

Query: 650 WKTTAQDLEQINCGD-----------NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            K + + L  +   D           NP+ + +L  ++  K  S+YAD    + +    R
Sbjct: 295 LKVSKKVLLPLADLDRDWERIGAREPNPLAEAVLRAKRAGKWVSSYADKFAENHDPLG-R 353

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +H   +     TGR++          + +      R      P   + S D+  IE+R+L
Sbjct: 354 IHPTINTLQARTGRMSISGDFAAQ-TLPSSDWMIRRAVLGDKPDHIVGSVDFQAIEMRVL 412

Query: 759 AHIAKITPLYQ----------VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           A +A +  + +          V+ +  DIH   A  I G N    + + R+  K   F  
Sbjct: 413 AALAGVRRMTEGFLDPDPDPSVYPDGFDIHMYTARLIKGPN---ATKRDRKVFKGAGFGK 469

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE-TIFGRRI 867
           +YG     ++ Q   P  E A  +  Y   FP I     K +   R  G V  T  GR +
Sbjct: 470 VYGGGIKTISRQTGAPEHEIARAVAEYDRVFPEIKRASSKWQREARARGCVTVTPTGRIL 529

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             D               A +N   Q +A D+  +AMI+    + D  L   M L IHDE
Sbjct: 530 PLD----RNRM------YAVVNYKCQSTARDVLGQAMIN----MRDAGLLEYMKLPIHDE 575

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV-SNNWQ 973
           +VF  P+ +    ++     M           VP+     +   +W 
Sbjct: 576 IVFSAPKSDAQDIAREFERCM-----TMDLFGVPVVAEADLGGRSWG 617


>gi|331697087|ref|YP_004333326.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951776|gb|AEA25473.1| 5'-3' exonuclease, resolvase-like domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
          Length = 312

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 35/298 (11%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D +S  +RA+Y  P      DG PVNA+ GF +M+ +L+   R   + +   + +  
Sbjct: 1   MLLDAASMYFRAYYGVPESITAPDGTPVNAVRGFTDMVARLVAERRPTRLVACLDLDW-- 58

Query: 68  PAVTFRNEIYPDYKANR--------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
               FR +  P YKA+R               ++P+ L PQ+P++     A GI      
Sbjct: 59  -RPRFRVDALPSYKAHRVAGTERDTVPYGVPEEVPDTLAPQVPILLEVLAAAGIATGGAV 117

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIE 166
           G EADD+I T      +   AV+++S D+DLMQ+V                 K E +  +
Sbjct: 118 GHEADDVIGTLA--GRERTDAVSVVSGDRDLMQVVREEPTPVRLIYVGRGLAKAETLGPK 175

Query: 167 HVIKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
            V +K+G+P ++       +  L GD  D +PG+PG+G KTAA L+  + + + +     
Sbjct: 176 EVAEKYGVPVDRAGEAYAEMAMLRGDPSDGLPGVPGVGAKTAATLVSRFESWDQLRNAVD 235

Query: 223 RIKQKKR----RENILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISF 275
               K+     R  +        +   +V +  D P+ +  +  L     +  RL   
Sbjct: 236 DPGDKRLSPPVRSKLAAAKPYLAVVEPVVRVALDAPVELDRDDTLPSAPADPARLAEL 293


>gi|218710358|ref|YP_002417979.1| exonuclease IX [Vibrio splendidus LGP32]
 gi|254799415|sp|B7VJ90|XNI_VIBSL RecName: Full=Protein Xni
 gi|218323377|emb|CAV19554.1| Probable exodeoxyribonuclease IX [Vibrio splendidus LGP32]
          Length = 257

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 126/262 (48%), Gaps = 13/262 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R        +     +           L ++L  S+     +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSVQSDPTDIARTITTT-----ARTLNRILNESK----PTHIIAVF 54

Query: 66  DYP--AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+      +R E+ P YK NR  +PE L+  L  ++ A    GI ++   G EADD++AT
Sbjct: 55  DHHLQDRGWRAEVLPAYKQNRKPMPEPLMKGLDAIQQAWWELGIDSLLSDGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTIISTDK   QL+SPT  + D  +   +D   +  ++G+ PE++    
Sbjct: 115 LAKKVADHGETVTIISTDKGYCQLLSPTLQIRDYFQHRWLDKPFIEAEFGVKPEQLADYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
            LTG S   +PGIPGIG K A  +L  Y ++E      +    KK R+   E+ E+AR+ 
Sbjct: 175 GLTGVSSSQVPGIPGIGPKAAKEILTTYPDIETAF--LAEDLPKKYRKKFDEHIESARVC 232

Query: 244 RKLVMLRTDVPITIPLEHLILE 265
           + +  L+TD+ +   L+ +  E
Sbjct: 233 KLVSALKTDIDLGFNLQDIRYE 254


>gi|153005677|ref|YP_001380002.1| 5'-3' exonuclease [Anaeromyxobacter sp. Fw109-5]
 gi|152029250|gb|ABS27018.1| 5'-3' exonuclease [Anaeromyxobacter sp. Fw109-5]
          Length = 298

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            + LVDG+  ++RA ++  + S R   G    A  G    L  LL ++      +H AV 
Sbjct: 2   RVHLVDGTFELFRAHFSPRMASHRARAGGEAKATVGLVISLLGLLHDA--AEGVTHLAVA 59

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD P  +FRN+++  YK++   +P  L  Q      A +A G+    ++  EADD +AT 
Sbjct: 60  FDNPIRSFRNDLWAGYKSD-EGVPPELRAQFDAAEEAARALGLVVWSMRELEADDALATG 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQ 183
                     V I++ DKDL Q +     +        +ID   ++ + GI PE +    
Sbjct: 119 VRRFRDAVEQVRIVTPDKDLGQCLDGGRVVMVDRVRRREIDEGSLLARRGIRPESVPDYL 178

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-----KRRENILEYAE 238
           AL GDS D IPG+PG G  TAA LL  +G+L+ I    +R         +    ++E+ +
Sbjct: 179 ALVGDSADGIPGVPGFGPVTAARLLAAHGHLDAIPEQPARWPAGIRGATQLAATLVEHRD 238

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            A L R+L  L +D P+   LE L  +     R   + + ++   L+  +  
Sbjct: 239 AAVLYRRLATLVSDAPLAESLEELRWQGIPRARFERWCEKVDARPLLATLGA 290


>gi|76665032|emb|CAJ17956.1| 5'-3' exonuclease [Candidatus Phytoplasma solani]
          Length = 252

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 5/228 (2%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   +T R++IY DYK  RP  P  L+ Q+PL++      G+       +EADDI
Sbjct: 1   ILVAFDTHHLTKRHQIYDDYKKGRPITPSELISQIPLIKQYLTLIGVKHHYQPEYEADDI 60

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP 176
           I T    A K+   V I S+D+DL+QLV     +    K  K     D + +++++G+  
Sbjct: 61  IGTLAKKASKKNKKVFIYSSDQDLLQLVDANITVCLIKKGLKEIKCFDPQTLLEEYGLKE 120

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
            +M+  +AL GD  DNI G+ GIG KTA  LLQ Y NL N+LI   +IK  + +E I   
Sbjct: 121 YQMIDYKALIGDPSDNIKGVVGIGPKTAQKLLQTYDNLNNLLICLDQIKP-RLKEQIKNS 179

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            +  +LS+ L  +  +VP+        ++ C+  ++ +F + ++F +L
Sbjct: 180 EKDLKLSKILTTIEVEVPLPFEFNQTQMQACSYQKIKAFYEEMDFRRL 227


>gi|86740972|ref|YP_481372.1| 5'-3' exonuclease [Frankia sp. CcI3]
 gi|86567834|gb|ABD11643.1| 5'-3' exonuclease [Frankia sp. CcI3]
          Length = 327

 Score =  199 bits (507), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 107/228 (46%), Gaps = 24/228 (10%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L LVD  S  +R+F+  P   R  DG PVNA+ G  ++L + +   R + + + F  
Sbjct: 17  DGRLMLVDTPSLYFRSFFGVPRSVRAPDGTPVNAVRGLLDVLARQIGEVRPKRVVACFDA 76

Query: 64  IFDYPAVTFRNEIYPDYKANR---------------PKIPEMLLPQLPLVRLATQAFGIP 108
            +      FR  +   YKA+R                ++   LL QLP++     AFGI 
Sbjct: 77  DW---RPAFRVALLASYKAHRVADVGAGEAGGGGQVERVDGDLLAQLPIIDEVLDAFGIA 133

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI 165
             E  GFEADD+IAT    A +    V I++ D+DL QLV         Y   K   +D 
Sbjct: 134 RAEAAGFEADDVIATL---ATRHRGEVDILTGDRDLFQLVDDAAGVRVRYAVEKFAVVDE 190

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             V  ++G+P         L GD  D +PG+ GIG KTAA LL  +G+
Sbjct: 191 AAVTARYGVPGRAYADFAVLRGDPSDGLPGVAGIGAKTAAALLTRFGS 238


>gi|47076970|dbj|BAD18421.1| unnamed protein product [Homo sapiens]
          Length = 312

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 151/345 (43%), Gaps = 54/345 (15%)

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
            L  ++  L+ P+I +++ ME   IQ++++ +++ SA +   L  LE+  + ++GE+F +
Sbjct: 10  GLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLI 69

Query: 624 SSPKQLGDILFTKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           +S  QL +ILF KLK        S  +T   ++ +T++ +       +PI          
Sbjct: 70  TSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVNIQGISKHPI---------- 119

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
                                         T        E  +  I  +          F
Sbjct: 120 ----------------------------QITTPKNFKGKEDKILTISPR--------AMF 143

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSP 795
           +S      ++AD+SQIELRIL H++    L ++F+ S   D+   + ++   V +E+V+ 
Sbjct: 144 VSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTH 203

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R   K + ++++YG    RLA  L +P  EAA +++ +  ++  I ++         Q
Sbjct: 204 ADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQ 263

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            G V +I GRR     I++    +R   ER A+N  +Q  +  + 
Sbjct: 264 TGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQAQSQHLC 308


>gi|302386608|ref|YP_003822430.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Clostridium saccharolyticum WM1]
 gi|302197236|gb|ADL04807.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Clostridium saccharolyticum WM1]
          Length = 358

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 142/355 (40%), Gaps = 80/355 (22%)

Query: 3   KENHLFLVDGSSFIYRAFYATPL------------------LSRKHDGLPVNAIAGFCNM 44
            E    +VDGSS +   +YA                     +    DG   NA+ G   M
Sbjct: 2   SERKFVIVDGSSMLSTCYYAVLPREIMFAKSEEEKQKHYDKILHAKDGTYTNAVFGMLKM 61

Query: 45  LWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA 104
           +  L++  + +    + A +FD    TFR E+YPDYK  R   PE L  Q  L+    + 
Sbjct: 62  IVSLMKKQQPD----YIAFVFDKTRDTFRRELYPDYKGTRGITPEPLKSQFVLMEEILKD 117

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-------------- 150
            G   +  + +EADD   +      KE  ++ +++ D D +QLV+               
Sbjct: 118 VGFQVLLSEQYEADDYAGSLVMKFRKE-ISMILLTKDHDYLQLVNDEYNVRAWMVQSRQE 176

Query: 151 --------TTCLYDTVKEE--------KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
                       Y   KEE        +   + V+++ G+ PE++  L+ + GD  DNIP
Sbjct: 177 KAEELYQKYYSFYGVKKEEVNLPEKVFEYTSDTVLREEGVRPEQIADLKGIQGDPSDNIP 236

Query: 195 GIPGIGYKTAALLLQEYGNLENILINASRIKQ-KKRRENILEYAET-------------- 239
           G+ G+       LL+EYG +E I  +    +  KK  + + ++ +               
Sbjct: 237 GVKGV-SSAVPPLLREYGTVEEIYRSIHEAEADKKILKELQDFWKNQLGITRSPYKALTK 295

Query: 240 -----------ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
                      A LS+ L  ++TD+PI + LE    E     ++  +LK L+  +
Sbjct: 296 TSEEELCGEKAAMLSKTLATMKTDIPIDMALEAFSAEAYQEEKVKKWLKILDIKE 350


>gi|111017852|ref|YP_700824.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817382|gb|ABG92666.1| probable DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 318

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 142/321 (44%), Gaps = 29/321 (9%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  +RA+YA P      DG  VNA+ GF +M+  L+   +   +A    + 
Sbjct: 3   GPLLLLDGASLWFRAYYALPDSITSPDGRSVNAVRGFTDMVAALITKHQPSRLAVCLDLD 62

Query: 65  FDYPAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +      FR E  P YKA+R          ++P+ L PQ+P++     A GI     +G 
Sbjct: 63  W---RPAFRVEAVPTYKAHRVAEDTGGAEEEVPDTLSPQVPMILDVLAATGIATAGAEGL 119

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHV 168
           EADD++ T   I  ++     +++ D+DL+Q+V+                K E +  + V
Sbjct: 120 EADDVLGTLAAIETRD--TTIVVTGDRDLLQVVTDAPVPVRVLYVVRGLAKAELLGPDEV 177

Query: 169 IKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA--- 221
             K+G+P ++       L  L GDS D +PG+ GIG KTA+ L+ +YG+L  +   A   
Sbjct: 178 AAKYGVPADRAGEAYAELALLRGDSSDGLPGVKGIGEKTASSLIMQYGSLAALRAAAVDP 237

Query: 222 SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALE 280
                K  R      A+    +  +V +  D  + +  E  L  E  +  RL    + L 
Sbjct: 238 ESDMAKGARAKFAAAADYLDAALPVVRVVRDAEVELSREDTLPAEPVDADRLGRLAEELG 297

Query: 281 FTKLINRVATTYDCDAANIEP 301
               + R+       AA   P
Sbjct: 298 IENSVGRLTAAMKKVAAARVP 318


>gi|21234370|ref|NP_640280.1| DNA polymerase [Vibrio phage VpV262]
 gi|21064883|gb|AAM28367.1| DNA polymerase [Vibrio phage VpV262]
          Length = 661

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 107/536 (19%), Positives = 224/536 (41%), Gaps = 40/536 (7%)

Query: 465 IGHNIKYDKLVLHRYGISMRGF--EDIMLMSYVLDSG-----RSSHDIASIAQKWLSYTR 517
           + HN K+D   L R G+        D ML  YVL        + +  + ++A+++L  T+
Sbjct: 92  VAHNAKFDIKWLIRAGLDPSRILVADTMLAEYVLTGNLKAGKKGALTLGALAKQYLGVTK 151

Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
             ++    +  +    I  S ++     +      LWL LR +++   ++H++      +
Sbjct: 152 DPLVDKLMRGGVSPRVIPKSLLERRNKSDIFQTRNLWLKLRDEMMERDVIHLFYN-RCLL 210

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
             V++ +E+ G+ +D++ + +     S+ +  +E ++ D+   + N  S  Q+ + ++  
Sbjct: 211 SPVLADIELNGVHLDKERVCEEHDIASRRMAEVEADLMDMIDGR-NPRSVPQMQEFIYDV 269

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINC---GDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           LKF    K    +W+ T +++ Q           +    E+ QL+   S   D     + 
Sbjct: 270 LKFKPLKKRGV-EWRPTGEEVLQFEARTKKQQAFLDLKKEFAQLNADLSKNLDYFYGVVT 328

Query: 694 KR-TQRVHTFYSLASTMTGRLASLE--------PNLQNIPIKTDLGQKIRRAFISPPTKK 744
           +R     +  ++ A T+T RL+S          P  ++I ++    +  R      P   
Sbjct: 329 EREDCLFYAQFNQAQTVTHRLSSSGIKTKFEMYPKAKSIQLQNSPRKYKRLYSARNPDWY 388

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           +I  D +QIE R+  +I + T + Q   + +D+HR  A+ +   + E+V+   R  AK  
Sbjct: 389 VIEMDGAQIEFRVAGYIGQDTRICQDIVDGVDVHRFTASVLNHCDEEEVTKDQRTDAKPD 448

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            F  +YG               +   Y + + +++  I +  +     V +N  +    G
Sbjct: 449 TFKPLYGGQYGT---------DDQMAYYEAFRNKYQDITQAQQDWLMKVLRNKEITHPTG 499

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSA-ADITRRAMISVHKSLEDHKLATKMLLQ 923
              +Y    S  SS    +  +  N P+Q  A A+I   A++++   ++  KL + ++  
Sbjct: 500 ITFYYPNA-SMSSSGYCQDFPSVCNYPVQNLATAEIIPIALVAIWHVMKAMKLQSFLVNT 558

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLP------KINLRVPLKVNIKVSNNWQ 973
           +HD ++ E P +E+    +I   +              +   VPL V  +   +W 
Sbjct: 559 VHDSVISESPRDELELMYEISKWAFLWWVYEFLDICYDLQFNVPLGVGYQAHTHWG 614


>gi|40807290|ref|NP_047956.2| gp11 [Streptomyces phage phiC31]
 gi|579076|emb|CAA53907.1| unnamed protein product [Streptomyces phage phiC31]
 gi|40313247|emb|CAA07135.2| gp11 [Streptomyces phage phiC31]
          Length = 617

 Score =  198 bits (503), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 112/641 (17%), Positives = 222/641 (34%), Gaps = 90/641 (14%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
             +D+++++         +    T  +  + S            +  T+ +   I  +L 
Sbjct: 20  TERDLREFMHWARNKPELALDTETTGLAMYSS-----GYKLRTVQFGTAHEAWVIHYELG 74

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFE---- 487
              ++           +L +  +F          HN  +D LVL  +  +SM        
Sbjct: 75  GRFAE-------AADYVLKHCPRFL--------IHNAPFDWLVLDAHTPVSMESLAPRTV 119

Query: 488 DIMLMSYVLDSGRSSHD-----IASIAQKWLSYTRKEILK---------SRKSSIPIDKI 533
           D  + + ++D  +         +  ++  ++  +  +                      I
Sbjct: 120 DTKIKATLIDPRQPQDGGIGTGLKPLSAFYVDPSAPDTQGDLTAVFRSLGLTKETGWAGI 179

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL----HVYERLDKPMIDVVSQMEITGIQ 589
                  +     +VI      L P L  E             +  +  + + M+  G+ 
Sbjct: 180 DLRHPTYNLYAGLDVIYT--ARLNPCLDAEHARLSIRPTLLEYEHEIAYMCAYMQRAGLA 237

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKF-NLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +D + +  +   + +     E+++Y  +     +++S  Q+ + L   +      +T  G
Sbjct: 238 LDLEYVDTLRRMLREE---EEKHLYAAAMWGVDSVNSGAQVAEALLA-MGETLTQRTDGG 293

Query: 649 QWKTTAQDLEQINCGD-----------NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
             K     L  +   D           NP+ + +L  ++  K  +TYAD   N+ +    
Sbjct: 294 ALKVDKAVLLPLADLDRDWERIGAREPNPLAEAVLRAKRAGKWVTTYADRFANNHDPHG- 352

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           R+H   +     TGR++          + +      R      P   + S D+  IE+R+
Sbjct: 353 RIHPNINTLQARTGRMSINGDFAAQ-TLPSSDWMIRRAIVGDAPDHIMGSVDFQAIEMRV 411

Query: 758 LAHIAKITPLYQVFENSL---DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           LA +A +  +   F N     DIH   A  I G+   + + + R+  K   F  +YG   
Sbjct: 412 LAALADVKRMKDGFVNGGSDFDIHMYTAQLIKGL---EATKRDRKVFKGAGFGKVYGGGV 468

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE-TIFGRRIHYDEIN 873
             +A Q     +E A  +  Y   FP I     + +   R  G V  ++ GRR+  D   
Sbjct: 469 ATIARQTGATEAEIARAVAEYDRVFPEIKRASSRWQREARGTGLVTVSVTGRRLPLDR-- 526

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
                       A +N   Q +A D+  +AM++    + D  L   M L IHDE+VF  P
Sbjct: 527 --------NRTYAVVNYQCQSAARDVLGQAMLN----MRDAGLLDYMKLPIHDEIVFSAP 574

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV-SNNWQ 973
           + +    ++     M           VP+  +  +   +W 
Sbjct: 575 KADAKDIAREFEKCM-----TMDLFGVPVVADADLGGRSWG 610


>gi|266620231|ref|ZP_06113166.1| putative 5'-3' exonuclease [Clostridium hathewayi DSM 13479]
 gi|288868174|gb|EFD00473.1| putative 5'-3' exonuclease [Clostridium hathewayi DSM 13479]
          Length = 355

 Score =  197 bits (502), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 130/355 (36%), Gaps = 81/355 (22%)

Query: 4   ENHLFLVDGSSFIYRAFYATPL------------------LSRKHDGLPVNAIAGFCNML 45
           ++   +VDGSS +   +YA                     +    DG   NAI G    +
Sbjct: 2   KDKFVIVDGSSMLSTCYYAVLPREIMFAKTEEEKQKHYGKILHAGDGTYTNAIFGMLKTI 61

Query: 46  WKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAF 105
             LL+         + A +FD    TFR E+Y +YK  R   PE L  Q  L+    +  
Sbjct: 62  ASLLKKQEPG----YIAFVFDKTRDTFRRELYAEYKGTRGATPEPLKQQFVLIESILEEA 117

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLY-------- 155
           G   +    +EADD   +       +   V +++ D D +QLV+       +        
Sbjct: 118 GFRVLYSDDYEADDYAGSLVMKFRSQ-VPVVVMTKDHDYLQLVNDEYNVRAWMVQAKQEK 176

Query: 156 --------------------DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
                                  K  +   EHV  + G+ PE++  L+ + GD+ DNIPG
Sbjct: 177 ADELYEKYYGPYGLTKKDVNLPEKTFEFTAEHVFAEEGVWPEQITDLKGIQGDTSDNIPG 236

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKR---------RENI------------- 233
           + G+       LL EYG +E +       +  K+         +E +             
Sbjct: 237 VKGV-SSAVPPLLAEYGTVEAMYEAIHDAETDKKQLKELQDFWKEKLGITRTPYKALTKT 295

Query: 234 -----LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
                L     A LS++L  ++TD+P+ + L    +E      L  + K L+  +
Sbjct: 296 GEDGELCGEAAALLSKRLAAIKTDIPLDLELADFSVEKYQEKVLRKWCKKLDIKE 350


>gi|260827865|ref|XP_002608884.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
 gi|229294238|gb|EEN64894.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
          Length = 196

 Score =  197 bits (502), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 2/189 (1%)

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
            V +  V    R   K + +SI+YG+ P +LAT L +  +E+  +I  +  RFPG+  + 
Sbjct: 2   NVPLGSVQTADRERTKRVVYSIMYGVGPEKLATYLNVSAAESKGFISSFLRRFPGVSRFT 61

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
            K K   +  G+V TI  R      I SP   +R+  ER A+N  +QGSAADI + AMI 
Sbjct: 62  HKCKEECKAKGHVRTILKRWRLIPNIKSPNFFLRSQAERQAVNFVVQGSAADICKLAMIL 121

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL--PKINLRVPLKV 964
           V K L +  L  K+L+Q+HDELVFEV +EE+ +   ++   M+   L   +I L+VPL+V
Sbjct: 122 VGKRLAEEGLKAKLLIQLHDELVFEVADEEVDSVKGVVRDIMQSDALLGGQIKLQVPLRV 181

Query: 965 NIKVSNNWQ 973
           ++ V  +W 
Sbjct: 182 SVSVGKSWG 190


>gi|289750685|ref|ZP_06510063.1| 5-3 exonuclease [Mycobacterium tuberculosis T92]
 gi|289691272|gb|EFD58701.1| 5-3 exonuclease [Mycobacterium tuberculosis T92]
          Length = 306

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 33/308 (10%)

Query: 15  FIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN 74
             +R+    P      D   VNA  GF + +  ++   R   +A    + +      FR 
Sbjct: 1   MWFRSIIGVPSSITAPDDRTVNAERGFIDSMAVVITQQRPTRLAVCLDLDW---RPQFRV 57

Query: 75  EIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           ++ P YKA+R             ++P+ L PQ+ ++     AFGI      GFEADD++ 
Sbjct: 58  DLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLG 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHVIKKWGIP 175
           T      +    V ++S D+DL+Q+V+                K        V +++G+P
Sbjct: 118 TLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLP 175

Query: 176 PEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKK 228
             +       L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   K    K 
Sbjct: 176 AHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKG 235

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLKALEFTKLIN 286
            R  +L  +   + + ++V + TD P+T+  P + L L   +  R             I 
Sbjct: 236 LRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTADLATRFGVESSIA 295

Query: 287 RVATTYDC 294
           R+    D 
Sbjct: 296 RLQKALDT 303


>gi|156122486|gb|ABU50234.1| DNA polymerase [Cyanophage S-CBP3]
          Length = 582

 Score =  197 bits (501), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 119/642 (18%), Positives = 235/642 (36%), Gaps = 121/642 (18%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F I TD +       +           D + K   +F D+          +  +TK I  
Sbjct: 5   FDIETDGL----YNDVTCIHCI--GIHDLNTKETYVFNDVGT--------QQPITKGI-- 48

Query: 452 YLKKFFENEHFLKIGHNI-KYDKLVLHRYGISMRGFE---DIMLMSYVLDSG-------- 499
              +  E+   + +GHNI  YD  V+ +            D +++S +  +         
Sbjct: 49  ---QLLEDADII-VGHNIIGYDLPVIRKLYPWFSNVGRVLDTLVLSRLYHADLLKTDQKR 104

Query: 500 ---------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
                       H + +   +   Y      K         K    +++++ +++ N+  
Sbjct: 105 NWKHMPVQLWGRHSLEAYGYRLGEY------KGCFGKTTDWKDWSQEMEDYMVQDVNITR 158

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           +LW    P++        + +L+  +  ++++ EI G   D+    ++ + + + L SL+
Sbjct: 159 KLWKDF-PEIPE------WVQLEHRVAQILTEQEIHGWYFDEPAAWELESTLRRELESLK 211

Query: 611 ENIYD----LSGEKF-----------------------NLSSPKQLGDILFTKLKFPSGA 643
             + +    + GE+F                       N +S   +  IL     +    
Sbjct: 212 AVLRNRHPFILGEEFTPKRPNSTQGYFTGATFTRLKEMNPTSRDHIAYILQKFYDWEPTE 271

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS---LPNHINKRTQRVH 700
           +T+ G+          +    + I        +L+K      +        +  R  R+H
Sbjct: 272 RTEKGKPVVDEIV---LKDIGSEIALQFFRCLELTKQIGMLTEGVNAWLKLV--RNDRIH 326

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
              S+ +T T R A  +PNL  +P + +      + F + P   ++ AD + IELR+LAH
Sbjct: 327 HHCSV-ATNTHRCAHRKPNLAQVPAEAEFR----KLFRATPGMVMVGADLAGIELRMLAH 381

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
                     ++       ++  +I   N +K+    RR  KT+ ++ +YG    ++   
Sbjct: 382 Y------LAQWDGGRYGDVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGNQKIGLS 434

Query: 821 LRIP------RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
                     + +  +  + Y    PG+ + +E TK      GY+  I GR I  D    
Sbjct: 435 YDQSLSPDKAKKKGQEIRQAYMDAIPGLRKLVEATKK-AANRGYIRAIDGRHISVD---- 489

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                   +   ++N  +Q SA  I +R +   H+++    +    L  IHDEL FE   
Sbjct: 490 --------SPHKSLNYLLQSSAGVIAKRWLALTHEAIIRADIKAHQLAFIHDELQFETTP 541

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E +      ++     A     NLR+P+  + K  N+W E +
Sbjct: 542 EHVEDLKFALLWGAASAG-EYYNLRIPIAADAKSGNDWSEVH 582


>gi|237807265|ref|YP_002891705.1| 5'-3' exonuclease [Tolumonas auensis DSM 9187]
 gi|259710449|sp|C4L9Z0|XNI_TOLAT RecName: Full=Protein Xni
 gi|237499526|gb|ACQ92119.1| 5'-3' exonuclease [Tolumonas auensis DSM 9187]
          Length = 260

 Score =  197 bits (500), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 7/263 (2%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCN-MLWKLLQNSRKESIASHFAVI 64
           HL ++D  + I R       +  K     V A     +  + + +    +E+  SH   +
Sbjct: 3   HLLILDALNLIRRIH----SVQSKQHPDDVAAQLAATDITMQRAVNTILQEATPSHVIAV 58

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD  A  +R   Y  YK  R  +P+ L   L  ++ +    GI ++  +  EADD+IAT 
Sbjct: 59  FDSEAPGWRKAKYAAYKEGRTAMPDALRQGLGQLQDSLLRLGIDSLVSETDEADDLIATL 118

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                     VT+ISTDK   QL+     + D   +  +D   V +++G+ P ++V   A
Sbjct: 119 VKPLVANDHQVTLISTDKGFCQLLDSGLQIRDYFNKRWLDHAFVQQQYGLQPSQLVDFWA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           LTG S  NI G+PGIG KTA  LL EYG L  +L  A     KK  + + ++ E   L++
Sbjct: 179 LTGISGMNIKGVPGIGEKTAQQLLSEYGTLTQLLD-ADATDNKKL-QLVQQHREVCLLAQ 236

Query: 245 KLVMLRTDVPITIPLEHLILEDC 267
           +LV L+ D+P+   L+ L     
Sbjct: 237 ELVRLKDDIPLGFNLKDLRYTPP 259


>gi|167470382|ref|ZP_02335086.1| DNA polymerase I [Yersinia pestis FV-1]
          Length = 140

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 5/140 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  LL   R     SH AV
Sbjct: 6   ENPLLLVDGSSYLYRAYHAFPPLTNGS-GEPTGAMYGVLNMLRSLLLQYR----PSHVAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++ +YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120

Query: 124 YTYIAEKEGFAVTIISTDKD 143
               AEK G +V I + DKD
Sbjct: 121 LAREAEKAGHSVLISTGDKD 140


>gi|315123484|ref|YP_004065490.1| exonuclease IX [Pseudoalteromonas sp. SM9913]
 gi|315017244|gb|ADT70581.1| exonuclease IX [Pseudoalteromonas sp. SM9913]
          Length = 257

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 8/262 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAI-AGFCNMLWKLLQNSRKESIASHFA 62
             HL L+D  + I R +      +   D   + A  A   +   KL+  +     A+H  
Sbjct: 2   NPHLLLIDALNLIRRIYAVDANQTHHSDEHMLKACCARVAHACKKLITTTN----ATHAI 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    ++R   Y DYK +R  +P+ L   LP  + A +  GI   E    EADDIIA
Sbjct: 58  AVFD-GDKSWRYHFYKDYKHSRAPMPQTLKEALPHFKAAIEETGIVVFEPTNDEADDIIA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + A       TI+STDK  +  ++    +YD  K++++  +H+ +++G+   K++  
Sbjct: 117 TLAHKAANNQINNTIVSTDKGFLPHLNEQIEVYDYFKKQQLTQQHIQERFGVAQHKLIDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  ++IPG+ GIG K+A  L+ +Y  LE  L  +      + ++ + +  +   +
Sbjct: 177 WALAGDKTNDIPGVKGIGVKSAQQLVNQYNTLEEAL--SDESLSARLQKKLADDMDMFVI 234

Query: 243 SRKLVMLRTDVPITIPLEHLIL 264
           S++LV LRTD+ +   L+ L L
Sbjct: 235 SKQLVSLRTDIHLGFSLKQLRL 256


>gi|291529772|emb|CBK95358.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Eubacterium rectale M104/1]
          Length = 354

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/355 (22%), Positives = 132/355 (37%), Gaps = 80/355 (22%)

Query: 7   LFLVDGSSFIYRAFYA-TPLLSR-----------------KHDGLPVNAIAGFCNMLWKL 48
             L+DGSS +   F    P   +                   +G+  N +      +  +
Sbjct: 2   FLLIDGSSLLTTNFMGNLPPEIKFCKDDDKYDRYADKILHTSNGIYTNGVYSTLMDIMNI 61

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIP 108
           ++  R E    + AV FD    TFR ++YP+YKA R   PE L  Q   ++      GI 
Sbjct: 62  IRIHRPE----YMAVAFDKTRDTFRRKLYPEYKAQRKPKPECLQQQFTTLKAILNELGIM 117

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---------------- 152
            +E   +EADD+I +     E     + I++ D D +QL +                   
Sbjct: 118 VLESGDYEADDLIGSVASHFENPFMKIKILTKDHDYLQLKTDNIDVWIMQTSADTAERMR 177

Query: 153 CLYDTVKEEK----------------------IDIEHVIKKWGIPPEKMVCLQALTGDSI 190
             Y+  K E+                         + +  + G+    +  L+ L GDS 
Sbjct: 178 IKYNIRKVEEWQYVAARKSYSEDDCLPCKAINFTDDIIKGEHGVDSMLIADLKGLMGDSS 237

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINAS---------RIKQKKRR----------E 231
           DNIPG+ G+G K A  LL  YG++ENI              ++  KK +          +
Sbjct: 238 DNIPGVRGLGPKAAVPLLDFYGSIENIYAAIDACENDAAKEKMLAKKWKDELGISRPPMK 297

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
            + +  + A +SR L  ++TD+ I   L        +     +  +  EF  LI 
Sbjct: 298 VLKDNRQMAFVSRYLATIQTDLMIPADLNAYAYS-IDSNTYENICRRYEFVSLIE 351


>gi|325171249|ref|YP_004251221.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512275|gb|ADX87732.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512343|gb|ADX87799.1| putative DNA polymerase [Vibrio phage ICP2_2006_A]
          Length = 710

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 119/630 (18%), Positives = 229/630 (36%), Gaps = 119/630 (18%)

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMR------GFEDIMLMSYVLDSGRSSH-DIASIAQ 510
           EN   L +G NIK+D L + R     R         D  L  Y+L         +  +A 
Sbjct: 72  ENGVLLLVGQNIKFDLLWMMRTYPDFRDMLPNLCIWDTQLAEYLLTGQDHKMASLNELAM 131

Query: 511 KWLSYTRKE-ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           K+    + + I +  K+ +    I    ++E+   +      ++L    ++I E LL++ 
Sbjct: 132 KYGGTLKDDRIAEFWKAGVDTSDIPFPMLEEYQKYDVINTEIVFLEQVDQIIKEGLLNLT 191

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL------EENIYDLSGEKFNL 623
                  +   ++ME  G++ D+DL  +++  +   +  +               +  N+
Sbjct: 192 MT-QMDALMATTEMEWHGMKFDKDLALELAKPLQAEIEDIKGAVSSVMEAVGFPKDSINV 250

Query: 624 SSPKQLGDILF------------------------------------------TKLKFPS 641
            S  Q+  ++F                                            L  P 
Sbjct: 251 GSNSQISALIFGGEVKYKEKDYIYNDDGTIATFKGGARAGQPKTKIFERSKRIEGLCKPI 310

Query: 642 GAKTKTGQWKTTAQDLEQINCGD------NPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
             K K G +      L ++            ++ +IL++RQL K  +TY     + +   
Sbjct: 311 SPKGKNGSYPVGDDSLSKVKAKYKGDAVVEQLVGDILKFRQLEKDVNTYYIGYASQVFPD 370

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK-------------IRRAFISP-P 741
              +H  Y+   T TGRL+S  PNLQNI       Q+             I+R  IS  P
Sbjct: 371 GC-LHGNYNHTKTGTGRLSSSSPNLQNISNSGKDLQRKNNKTTQRFHMSDIKRCIISRFP 429

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKV------- 793
             K++  D+SQ+E+   A +     + +     +D H M A+      + E++       
Sbjct: 430 NGKIMECDFSQLEVVGGAVLTGDPMMKKDIIEGVDTHCMSASWANPKYSYEEILAGYKAE 489

Query: 794 ---SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
                ++R++AK +NF++ YG      A    I   +A   I  Y+ R+  + ++ +   
Sbjct: 490 DPFFTKLRKNAKPVNFALQYGAGAETAAENAGIEVEQAQAIIDNYYKRYCVLKQFQDDVI 549

Query: 851 NFVRQ----------------NGYVETIFGRRIHYDEINSPKSSIR-----NINERAAIN 889
             V +                 G      GR   + E ++P+   R     + +     N
Sbjct: 550 EQVNKSRQPSSRRTEMGMPAGRGEYRNPTGRIFTFYEYDAPEFLRRRGQMTSFSPTQCKN 609

Query: 890 APIQGSA-ADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            P Q  A  DI    +  ++K L   +  +    ++  +HD +VF+V  + +  A++ + 
Sbjct: 610 YPTQSFATGDIVPMMLGHIYKLLMTDKTLRDKCLLIGTVHDSVVFDVHPDILDYAAKAVR 669

Query: 946 HSMEKAC-----LPKINLRVPLKVNIKVSN 970
             M +         K+   +PL  ++ +  
Sbjct: 670 GLMLRTPEYVERYLKVPFDMPLACDVDIGE 699


>gi|117928414|ref|YP_872965.1| 5'-3' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648877|gb|ABK52979.1| 5'-3' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 324

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 127/304 (41%), Gaps = 22/304 (7%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L  VD +S  +RAFY  P      DG PVNA+ G  + L  L++ S  E +A      
Sbjct: 15  GKLLAVDAASLYFRAFYGVPERFAARDGTPVNAVRGLLDALVTLIRLSEPEFLAVCLDPD 74

Query: 65  FDYPAVTFRNEIYPDYKANRPK------IPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +      FR    P YKA+R        +P  L  Q+PL+    QA GI  + + GFEA 
Sbjct: 75  W---RPAFRVAALPAYKAHRAASDGSEIVPPELAVQIPLIPKVLQALGIAVVAVPGFEA- 130

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT------TCLYDTVKEEKIDIEHVIKKW 172
                   +A +    V I + D+DL Q+V                  E +D  +V  ++
Sbjct: 131 --DDALATLAARHPGPVDIATGDRDLFQVVDDAKPVRVLYVQRGVRDAEVVDDGYVRHRY 188

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKR 229
           G+P         L GD  D +PGIPG+G KTAA LL+ +G+++ +L   +        + 
Sbjct: 189 GVPASSYADFAMLRGDPSDGLPGIPGVGEKTAARLLRTFGSVDALLAACAAGSADVPARL 248

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           RE I   A     +  +V +R DVPI      +         L +    L     ++R+ 
Sbjct: 249 RERISSAASYLAAAHIVVTVRRDVPIDTAPVPVSGVRPAAD-LGALADELGLAGPVHRLL 307

Query: 290 TTYD 293
               
Sbjct: 308 NALG 311


>gi|301092543|ref|XP_002997126.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262111575|gb|EEY69627.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 280

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 119/262 (45%), Gaps = 7/262 (2%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            LVDG++ +Y   +  PL + + +G+   A+ G    L +LL+   K     H +V+FD 
Sbjct: 25  LLVDGNNALY--HFYDPLSNVEQNGVKTEAVDG----LLRLLRRMDKTHEPEHISVVFDS 78

Query: 68  P-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               T R  + P YK +R  +P+ L PQ    +       +  IE  G EADDIIA+Y+ 
Sbjct: 79  KQRPTTRRVMQPVYKTDRAPMPQSLAPQFTYAQEVLSRANVNCIERPGMEADDIIASYSV 138

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
                G+ V +IS D D +QLV     +Y   K   I   +V  ++G+ P+ +    AL 
Sbjct: 139 QYTVAGYDVLLISNDNDFLQLVHGGVNIYQPSKRRYIRERNVRGRFGLHPKLLPDFHALC 198

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           G     +P +  +  + A  LL +YG L  +L     +      + + +   +   S ++
Sbjct: 199 GHHWKRLPRVDSLTDELAVQLLTQYGGLYPLLRQLDTLVDPVLCKTLKQCITSVESSYRI 258

Query: 247 VMLRTDVPITIPLEHLILEDCN 268
           V L   V + + +E L     N
Sbjct: 259 VKLVDTVELPVAIEDLRRPQLN 280


>gi|83286526|ref|XP_730200.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489855|gb|EAA21765.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 1103

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/355 (27%), Positives = 163/355 (45%), Gaps = 55/355 (15%)

Query: 658  EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
            E+       II NI  +R+  K+   Y ++LP +I K T+++H   +     TGRL+  +
Sbjct: 756  EKEKDKIKQIINNIKLYRESKKLFQNYIENLPKYIQKNTKKIHCNLNQLGASTGRLSCDQ 815

Query: 718  PNLQNIPIKTDL------------GQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
            PNLQNI  K                 K      +   K L++ DY Q+EL ++A+++   
Sbjct: 816  PNLQNIHSKFRCTISLKLNQLNSISIKKENIKNTSINKNLLTFDYKQMELFVMAYLSFDN 875

Query: 766  PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
             L ++  NS D+    A  +F  N  +++ ++RR  KT+ + I+YG S   LA  L I  
Sbjct: 876  QLLKMLNNS-DVFVETAKILFNTN--EITKELRRMTKTVIYGILYGQSENGLAKNLLISE 932

Query: 826  SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
            + A   I  +F+ +P ++++++K K  V+    V T+ GR+   D +            R
Sbjct: 933  NFAKSLIDNFFNFYPNVYKFMQKQKILVKNMNSVYTLIGRKRIVD-LGIKNK------YR 985

Query: 886  AAINAPIQGSAADITRRAMISVHK--------------SLEDHKLA-------------T 918
             ++N PIQG +ADI + A++S +K               L+ + +              T
Sbjct: 986  ISMNTPIQGCSADIMKFALLSCNKIISFDNNINKDINIFLKMNNINVSLLKKYQNYIKST 1045

Query: 919  KMLLQIHDELVFEVPEEEITTASQIIV-----HSMEKACLPKINLRVPLKVNIKV 968
            K++LQIHDEL+FE  E        I+         +   L   NL++P+K  I  
Sbjct: 1046 KLILQIHDELLFECDENGTHDIINILKPFGKFDKFDN-ILRDFNLKLPIKAEIGT 1099



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           +   S     S+  K ++  +K +  +++S   I +I++  +    +  +  ++ L+  L
Sbjct: 486 EPANSKFTFTSVKVKNINNIKKIVFGNKRS---IHEITEEDMIFFCVSRNIFLIILFNYL 542

Query: 557 RPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
             +L     +L +Y ++++P+I  +S++E  GI ++Q  ++++    +  L+  ++ I +
Sbjct: 543 INQLKYNINILTLYTKIEQPLIFCISEIEKEGIYLNQKKIQEIQNNSNNPLI-YKKQIEE 601

Query: 616 LSGEKFNLSSPKQLGDILFTKL 637
           L G   NL+S KQ+  +L   L
Sbjct: 602 LCGYDINLNSSKQVSSLLSKIL 623


>gi|240047653|ref|YP_002961041.1| 5-3 exonuclease [Mycoplasma conjunctivae HRC/581]
 gi|239985225|emb|CAT05238.1| 5-3 exonuclease [Mycoplasma conjunctivae]
          Length = 293

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 140/298 (46%), Gaps = 16/298 (5%)

Query: 1   MQKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M +   + L+DG+  +++++Y +     L +   G+  NAI  F    +KL+       I
Sbjct: 1   MNR--PILLIDGNLMLFKSYYGSVYGGGLLKNSQGIETNAIHTFFLTFFKLINLFNP--I 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
             +FA  FD  + T R+  + +YK  R + PE L  Q+  V+       I   +   +EA
Sbjct: 57  NCYFA--FDKGSKTPRHLAFSEYKQGRSETPESLFTQMEKVKQILTYANINWSQDYNYEA 114

Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKEE---KIDIEHVIKKW 172
           DD+IA+       +     + I S D+DL+QL+   T + DT+K E     ++++     
Sbjct: 115 DDLIASLKKQILDQNPQAKIVIFSADQDLLQLIDENTIVVDTIKAEGPNIKNLDNFYDLH 174

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
            I P ++V  + L+GD  DNI  I G+G K A  LL++YGNLENI+ N+ +I  K   E 
Sbjct: 175 HIFPHQVVDFKVLSGDKSDNIKIIAGLGLKGAQKLLEKYGNLENIIANSDQISGKIGLE- 233

Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           I E  E     +  + L         +   +    N  +LI+ L+ LE   ++     
Sbjct: 234 IKEKKEKLLFFQNFITLYNTAKFNFNIFDNLDIQIN-DKLIATLEELELKTVLKNFLN 290


>gi|149925128|ref|ZP_01913436.1| 5'-3' exonuclease family protein [Plesiocystis pacifica SIR-1]
 gi|149814005|gb|EDM73642.1| 5'-3' exonuclease family protein [Plesiocystis pacifica SIR-1]
          Length = 293

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/291 (29%), Positives = 136/291 (46%), Gaps = 15/291 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+  ++R+F+  P  +    G  V A       L + L    +E   SH A+ FD
Sbjct: 3   LHLIDGTYELFRSFFGAPP-ATSPSGREVGA----ARGLLRSLLALLREEGTSHVAIAFD 57

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +   +FRNE++  YK     +   L  Q PL    ++A G+    +  FEADD +AT   
Sbjct: 58  HVIESFRNELFDGYKTG-AGMDPALWQQFPLAERVSEALGLVVWPMVEFEADDALATGAA 116

Query: 127 IAEKEGF--AVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                     + + S DKDL Q V      L+D  + E  D + + +K+G+ P  +  L 
Sbjct: 117 RFADAPGVERILLCSPDKDLGQCVRGSKVVLFDRRRGETYDADGIREKFGVDPASIPDLL 176

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS----RIKQKK-RRENILEYAE 238
           AL GDS D IPG+P  G K+ A +L EYG+L+ I  + S    +++  K   + +     
Sbjct: 177 ALVGDSADGIPGLPRWGMKSTATVLGEYGHLDAIPDDPSAWTVKVRGAKGLADKLRAGRA 236

Query: 239 TARLSRKLVMLRTDVPITIP-LEHLILEDCNGPRLISFLKALEFTKLINRV 288
            A+L R L  LRTDVP+    ++ L         L      +   + ++RV
Sbjct: 237 DAQLYRTLATLRTDVPLPETEVDALRWRGARRSLLEPLCAEIGDQRALDRV 287


>gi|54025129|ref|YP_119371.1| putative 5'-3' exonuclease [Nocardia farcinica IFM 10152]
 gi|54016637|dbj|BAD58007.1| putative 5'-3' exonuclease [Nocardia farcinica IFM 10152]
          Length = 326

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 127/308 (41%), Gaps = 32/308 (10%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L+DG+S  +RAF+A P      DG  VNA+ GF +M+  L+             V  D
Sbjct: 16  LLLLDGASLWFRAFHAIPDKLTAPDGRSVNAVRGFTDMVASLITRFGPGR----LVVALD 71

Query: 67  YP-AVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                TFR E+ P YK +R           +P+ L PQ+ ++     A GI      G E
Sbjct: 72  LDWRPTFRVELVPSYKTHRLDPSGDPTAELVPDRLTPQVDMILDVLAAAGIATGGAAGLE 131

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHV 168
           ADD++ T       +   V      +DL+QLV                  K E      V
Sbjct: 132 ADDVLGTLADRERDDDVVVVSGD--RDLLQLVRDDPAPPVRVFYAGRGLAKAELFGPAEV 189

Query: 169 IKKWGIPPE----KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI---LINA 221
             K+G+P E        +  L GD+ D +PG+PGIG K+AA L+  +G+LE +   + +A
Sbjct: 190 SAKYGVPLENAGPAYADMATLRGDASDGLPGVPGIGDKSAATLISRFGSLEALCAAVEDA 249

Query: 222 SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP-LEHLILEDCNGPRLISFLKALE 280
                   R  +    +  + +  +V +  D  + +   + L  E  +  RL+       
Sbjct: 250 DADLAPGVRAKLRAAEDYLKAAAPVVRVVRDATVDLSRPDTLPTEPADRDRLLDLGTRYN 309

Query: 281 FTKLINRV 288
               + R+
Sbjct: 310 AESPVQRL 317


>gi|209972979|ref|YP_002300426.1| gp32.85 [Bacillus phage SPO1]
 gi|209871299|gb|ACI91055.1| gp32.85 [Bacillus phage SPO1]
          Length = 314

 Score =  195 bits (495), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 17/244 (6%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+DG++  +R F+       K DG P   I G  N +  LL+        +   V++D 
Sbjct: 3   MLIDGNNLAHRVFHTPQSSLTKKDGTPSGVILGVINSIKGLLEKFPDTEAVT---VMWDG 59

Query: 68  PAVTFRNEIYPDYKANRP---------KIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
               +R E+YP+YKA R          +  + L  Q+  +        I ++++ G+EAD
Sbjct: 60  GRSEWRKELYPEYKAQRDYGEDDEEKAEAYQGLWDQIEELHKNLDKLAIDSVKLTGYEAD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D+IA  T   E  G  V I+++DKD++QLVS  T +Y   ++  I + + ++  G+    
Sbjct: 120 DLIALMTKQLESLGKNVLIVTSDKDMLQLVSEKTSVYSPYRDIVIGLSNFVENTGVELNA 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            +  +AL GD+ DNI G+PGIG KTA  L+++YG+++NIL +   +     R+ +++   
Sbjct: 180 YMGYRALVGDTSDNIIGVPGIGEKTAQNLMKKYGHIDNILQSTGSV-----RKELMKSKR 234

Query: 239 TARL 242
            AR+
Sbjct: 235 NARI 238


>gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 145

 Score =  195 bits (495), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 70/144 (48%), Positives = 101/144 (70%)

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
            + G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+F
Sbjct: 1   NEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 60

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           G+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+  YF R+PG+ EY+
Sbjct: 61  GLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYM 120

Query: 847 EKTKNFVRQNGYVETIFGRRIHYD 870
           E+T+   ++ GYVET+ GRR++  
Sbjct: 121 ERTRAQAKEQGYVETLEGRRLYLP 144


>gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
 gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
          Length = 608

 Score =  194 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 114/627 (18%), Positives = 222/627 (35%), Gaps = 81/627 (12%)

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
             D       L+        + T  +                      F  +     + +
Sbjct: 24  EFDPAAMAADLDGEPILGLDVETRAL---------------PDTGPRHFGPDAGLRLVQL 68

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL-VLHRYGISM-RGFEDIML 491
            T+  +   + L     + +     +     + H   +D L V     I + +   D  L
Sbjct: 69  GTATVAWVLDPLDPAQRAAIAAVLGDPGRRFVTH-TSFDTLAVWSALAIGLGQRVADTHL 127

Query: 492 MSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE------ 544
           +S ++D      H + ++  + L     + L   ++++     + +   E A E      
Sbjct: 128 ISKLVDPDERAGHGLKTLTARHL----DDGLTLAQTALYARMRALAPPGERAGERWKTWG 183

Query: 545 -------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
                  +   ++ +  LL   L +         +++ +      + I G+ +D    + 
Sbjct: 184 WAHLPADDEAYVVYVRRLLPVLLDLCGPFSHLVPVEQWLAAQSVGITIRGLALDLPYTRA 243

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
             A++  +  +    I    G     +SP+   D L T+     G +T TG+ + TA  L
Sbjct: 244 YLAQVEADHHAAAALIEAELGCP--PTSPR-FADWLDTQ--HVPGPRTATGRLQVTADTL 298

Query: 658 EQINCG--------DNPIIKNILEWRQLSKIKSTYAD--SLPNHINKRTQRVHTFYSLAS 707
             +            + + + +    +++   +T A+  S     +    RVH   +   
Sbjct: 299 TALARDLDTGRLTVSDQVRRMLTARGRVAATSNTIANLRSFLAAADPAG-RVHPQINTLR 357

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
             TGR++   P LQ +        ++R  F + P   LIS D+SQ+E+R+ A +++   L
Sbjct: 358 AKTGRMSITGPALQTLKKGDP---RLRHCFQADPGHVLISCDFSQVEVRVTAALSRDPAL 414

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
             V  + +DIH   A  +FG   +  +   R  AK   F  IYG     L          
Sbjct: 415 TDVLASGVDIHDATARLLFG---DGFTKDQRTLAKRATFGTIYGGGARALMNATGATHQV 471

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
           A D I R+   +PG+  Y  +  +    +  V T  GRRI  D +             A 
Sbjct: 472 ATDVITRWRAAYPGVAAYSARLAD----HNPVITGSGRRIPADPLR----------PYAN 517

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
            N  +Q +A D+    + +VH  +  H L   + L +HDE++  VP +     +  +  +
Sbjct: 518 ANYAVQSTARDLL---VTAVHTLVTRHGLHDALWLFVHDEVIVHVPTDRAAQVAADLQAA 574

Query: 948 MEKACLPKINLRVPLKVNIKV-SNNWQ 973
           M  +        V +     +   +W 
Sbjct: 575 MTTSFRG-----VAITAEADILGTHWG 596


>gi|42560650|ref|NP_975101.1| DNA polymerase I, 5'-3' exonuclease [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492146|emb|CAE76743.1| DNA POLYMERASE I, 5'-3' exonuclease [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301321342|gb|ADK69985.1| 5'-3' exonuclease, SAM domain protein [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 304

 Score =  194 bits (493), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 144/299 (48%), Gaps = 14/299 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
            +   + L+DG   +++ +Y T    ++S+  DG+ +NAI  F   + K +Q+ R  S  
Sbjct: 4   NETKPILLIDGYHLLHKGYYGTLKRTIVSKNKDGIVINAIYSFVANILKFVQSDRYHS-- 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
               V FD+    +R E+Y +YKA R   P  L+PQL + R    +  I   E   +E D
Sbjct: 62  --VIVAFDFDENCWRKELYSEYKAKRKPTPIDLIPQLQIARDFLTSANISWYEKYNYEGD 119

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT----TCLYDTVKEEKIDIEHVIKKWGI 174
           D+I +   IA K G+ V I++ DKD+ QLV+      T +    K + I  E V + +  
Sbjct: 120 DVIGSICRIANKLGYDVCILTNDKDIYQLVNNKTSIITNISKKEKIKIIKSEQVYEHFLC 179

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P ++  ++A+ GD  DNI G+  I  K A  L+ +Y N+ENIL + + + +   +  I 
Sbjct: 180 QPNQVADIKAILGDQSDNIKGVKYIKRKQAESLINKYENVENILDHINELNEP-LKTIIS 238

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           E  +    ++K+  + T+V +     +         RLI FLK  E    I  +    +
Sbjct: 239 ENKQLIIDNKKITKILTNVKLGRI--NFKPTKITYYRLIRFLKEQEMYAFIRPIRKYLE 295


>gi|90407483|ref|ZP_01215666.1| putative exodeoxyribonuclease IX [Psychromonas sp. CNPT3]
 gi|90311404|gb|EAS39506.1| putative exodeoxyribonuclease IX [Psychromonas sp. CNPT3]
          Length = 261

 Score =  194 bits (492), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 122/260 (46%), Gaps = 5/260 (1%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++D  + I R +     +  K  G    AI     +    LQ   ++   +H   +F
Sbjct: 4   TLLIIDAMNLIRRIY----AIQEKQHGESTRAIEETTKIACTALQKLAQQHTPTHVICVF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D    ++R+++YP YK  R  IP +L   L  ++      G  ++  +  EADD+IAT +
Sbjct: 60  DSHTKSWRHQLYPLYKHGRKPIPTLLKQSLGNIQDQFMKIGFESLLSETDEADDLIATLS 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
               K+     I+STDK   QL+ P   ++D  +    D   V+ K  +  +K+    A+
Sbjct: 120 DKMAKKKQKCIIVSTDKGFYQLLGPQILIFDHFQNSYTDSGRVLNKMALNIDKLCDYWAI 179

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
           TG S   I G+ G+G K A LLL EYGNL+ I       K K     + +    ARLS++
Sbjct: 180 TGISSSAIKGVEGVGEKGALLLLHEYGNLQAIFDAPINEKNKPLC-KVKKCEHEARLSQQ 238

Query: 246 LVMLRTDVPITIPLEHLILE 265
           LV L+ D+ +   L+ L  +
Sbjct: 239 LVTLKKDINLGFNLQDLRYQ 258


>gi|229493526|ref|ZP_04387311.1| 5-3 exonuclease [Rhodococcus erythropolis SK121]
 gi|229319487|gb|EEN85323.1| 5-3 exonuclease [Rhodococcus erythropolis SK121]
          Length = 321

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 120/261 (45%), Gaps = 28/261 (10%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  +RAFYA P      DG PVNA+ GF +M+  L+   +   +A    + 
Sbjct: 3   GPLLLLDGASLWFRAFYALPESFVDPDGRPVNAVRGFTDMVASLITKHQPSRLAVCLDLD 62

Query: 65  FDYPAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +      FR +  P YKA+R          ++P+ L PQ+ ++     A GI      G 
Sbjct: 63  W---RPQFRVDAVPTYKAHRVEEGSDGASEEVPDTLTPQVDMIMDVLAAAGIATAGAVGL 119

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHV 168
           EADD++ T    A +      ++S D+DL+Q+V+                K E      V
Sbjct: 120 EADDVLGTLA--ATEREDLTVVVSGDRDLLQVVTDEYVPVRVLYVGRGLSKAELFGPVEV 177

Query: 169 IKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            +K+G+P ++       L  L GD+ D +PGI G+G KTA+ L+  YG+L  +   A+  
Sbjct: 178 AEKYGVPGDRAGEAYAELAVLRGDASDGLPGIKGVGEKTASTLMLRYGSLAGLRAAAADP 237

Query: 225 K---QKKRRENILEYAETARL 242
           +    K  R  +      A L
Sbjct: 238 ESDMAKGIRAKLTSPEAMAYL 258


>gi|225390409|ref|ZP_03760133.1| hypothetical protein CLOSTASPAR_04162 [Clostridium asparagiforme
           DSM 15981]
 gi|225043527|gb|EEG53773.1| hypothetical protein CLOSTASPAR_04162 [Clostridium asparagiforme
           DSM 15981]
          Length = 318

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/312 (24%), Positives = 122/312 (39%), Gaps = 63/312 (20%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             DG   N I G    +  L++  + +    H A +FD    TFR E+YPDYK  R   P
Sbjct: 4   AADGTYTNGIFGVLKAVASLVKRQQPD----HVAFVFDKTRDTFRRELYPDYKGTRTSTP 59

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148
           E L  Q  L+       G   +    +EADD   +       +   + +++ D D +QLV
Sbjct: 60  EPLKQQFVLLEQILADAGFKVLYSDRYEADDYAGSLVMKFRDQ-IPMVVMTKDHDYLQLV 118

Query: 149 SP--TTCLY----------------------------DTVKEEKIDIEHVIKKWGIPPEK 178
                   +                               K  +   EHV+ + G+ P +
Sbjct: 119 DDEHNVRAWMVQARQEKADELYEKYYGPYGLDKKSINLPEKTFEFTAEHVLAEEGVLPCQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-KKRRENILEYA 237
           +  L+ + GDS DNIPG+ G+    A LLL EYG +E I       +Q KK  + + ++ 
Sbjct: 179 ITDLKGIQGDSSDNIPGVKGV-ASAAPLLLNEYGTVEEIYAALHEAEQDKKVLKELQDFW 237

Query: 238 ET--------------------------ARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           +                           A LS++L  ++TD+ +   LE   L   +  +
Sbjct: 238 KQNLGISRSPYKALTKTGEEGELCGEAAAMLSKELATIKTDIELDYILEDFELSHYDEKK 297

Query: 272 LISFLKALEFTK 283
           L ++ K L+  +
Sbjct: 298 LRAWCKKLDIKE 309


>gi|298241292|ref|ZP_06965099.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Ktedonobacter
           racemifer DSM 44963]
 gi|297554346|gb|EFH88210.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Ktedonobacter
           racemifer DSM 44963]
          Length = 291

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 136/291 (46%), Gaps = 15/291 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            ++LVDG+  ++R+ +  P   +  DG  V A       L + L         +H A  F
Sbjct: 2   KIYLVDGTYELFRSHFGAPP-RKAPDGREVGA----TLGLLRSLLMLLTTPGITHVACAF 56

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D+   +FRN+ YP YK     +   L+ Q PL   A  A G+    +  FEADD +++ T
Sbjct: 57  DHVIESFRNDQYPGYKTG-AGVDSNLIAQFPLAEEAVSALGLVVWSMVEFEADDALSSAT 115

Query: 126 YIAEKEGF--AVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
              + E     + I S DKDL QLVS      +D  ++  ID   V++K+G+ P+ +   
Sbjct: 116 ARFKNEAGVEQIVICSPDKDLAQLVSGSRIVGWDRRRDILIDEAGVVEKFGVRPQSIPDW 175

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRENILEYA 237
             L GD+ D  PGIPG G K+AA +L +Y +LE I  +            +  E++ ++ 
Sbjct: 176 LGLVGDAADGFPGIPGWGEKSAAAVLAKYEHLEAIPADPQTWGLSASRAARLAESLAQHW 235

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
             A L RKL MLR DVP+   L  L  +     RL      L   K   RV
Sbjct: 236 AEALLFRKLAMLREDVPLKETLADLEWQGA-YERLKDVCHRLGDEKFPGRV 285


>gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 593

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 103/593 (17%), Positives = 212/593 (35%), Gaps = 90/593 (15%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIK-YDKLVLHRY--G-ISMRGFEDIMLMSYVL 496
                   I   +K+  E +    + HN + +D   ++ +  G ++     D ++ + +L
Sbjct: 34  ADQIGFPPIKDAIKRLKEADRV--VFHNGQGFDIHAINHFYPGTLTPHQVWDTLVAARLL 91

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           +    ++ +    ++       E     K      K    ++ E+A ++  V  +L+  L
Sbjct: 92  NPSERANSLDDWGKR-----LGEYKGEFKDFSRFSK----ELVEYARQDVVVTRKLYHKL 142

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD- 615
            P+L           L+     ++S     G  ++    + + AE+ +    +E  + + 
Sbjct: 143 EPQLRNWGQS---FELENLFAYIISLQVQNGFHLNTGKARGLEAELRQEASDIERELQEV 199

Query: 616 ---------------------------------LSGEKFNLSSPKQLGDILFTKLKFPSG 642
                                            L  E FN  S  Q  D L  K K+   
Sbjct: 200 FPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLKLEIFNPGSRPQAADRLIKKYKWKPK 259

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS---LPNHINKRTQRV 699
             T  G        L ++     P  K +  + +++K+     D        +N+ T RV
Sbjct: 260 KFTDKGSPAIDESVLAKLK---YPEAKVLNRYLRITKLLGQVVDGENGWLKLVNEETSRV 316

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           H   +     TGR +  +PN+  +  K     ++R  + + P   L+  D   +ELR+LA
Sbjct: 317 HGAVNTIGAATGRCSHFKPNMAQVDKKD---LRMRECWEARPGWDLVGVDAEGLELRMLA 373

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H         +    L+  +    +   +N + V    R +AK + ++++YG    +L  
Sbjct: 374 HYLGKFDGGALTRALLEGSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYGAGDVKLGQ 433

Query: 820 QLRIPRSEA------------ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
            +     EA            A   K       G+ + ++K K+   +  Y++ + GRRI
Sbjct: 434 IIVDDAREAGINLKGNKKALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYIQGLDGRRI 493

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH----KSLEDHKLATKMLLQ 923
           +    +S            A N  +QG  A + ++A+I  H         +         
Sbjct: 494 YVRSEHS------------AFNFLLQGGGAIVMKQALILFHFNHSHKFGPYGERWAYCAN 541

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +HDE+  E   +     ++ +   + +A     ++R PL     +  NW++ +
Sbjct: 542 VHDEVQSETHPDISKAYAETLADCIREAG-EHFDMRCPLAGAYDIGKNWKDTH 593


>gi|254505350|ref|ZP_05117498.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222436194|gb|EEE42876.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score =  193 bits (490), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 103/593 (17%), Positives = 212/593 (35%), Gaps = 90/593 (15%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIK-YDKLVLHRY--G-ISMRGFEDIMLMSYVL 496
                   I   +K+  E +    + HN + +D   ++ +  G ++     D ++ + +L
Sbjct: 21  ADQIGFPPIKDAIKRLKEADRV--VFHNGQGFDIHAINHFYPGTLTPHQVWDTLVAARLL 78

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           +    ++ +    ++       E     K      K    ++ E+A ++  V  +L+  L
Sbjct: 79  NPSERANSLDDWGKR-----LGEYKGEFKDFSRFSK----ELVEYARQDVVVTRKLYHKL 129

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD- 615
            P+L           L+     ++S     G  ++    + + AE+ +    +E  + + 
Sbjct: 130 EPQLRNWGQS---FELENLFAYIISLQVQNGFHLNTGKARGLEAELRQEASDIERELQEV 186

Query: 616 ---------------------------------LSGEKFNLSSPKQLGDILFTKLKFPSG 642
                                            L  E FN  S  Q  D L  K K+   
Sbjct: 187 FPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLKLEIFNPGSRPQAADRLIKKYKWKPK 246

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS---LPNHINKRTQRV 699
             T  G        L ++     P  K +  + +++K+     D        +N+ T RV
Sbjct: 247 KFTDKGSPAIDESVLAKLK---YPEAKVLNRYLRITKLLGQVVDGENGWLKLVNEETSRV 303

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
           H   +     TGR +  +PN+  +  K     ++R  + + P   L+  D   +ELR+LA
Sbjct: 304 HGAVNTIGAATGRCSHFKPNMAQVDKKD---LRMRECWEARPGWDLVGVDAEGLELRMLA 360

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           H         +    L+  +    +   +N + V    R +AK + ++++YG    +L  
Sbjct: 361 HYLGKFDGGALTRALLEGSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYGAGDVKLGQ 420

Query: 820 QLRIPRSEA------------ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
            +     EA            A   K       G+ + ++K K+   +  Y++ + GRRI
Sbjct: 421 IIVDDAREAGINLKGNKKALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYIQGLDGRRI 480

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH----KSLEDHKLATKMLLQ 923
           +    +S            A N  +QG  A + ++A+I  H         +         
Sbjct: 481 YVRSEHS------------AFNFLLQGGGAIVMKQALILFHFNHSHKFGPYGERWAYCAN 528

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +HDE+  E   +     ++ +   + +A     ++R PL     +  NW++ +
Sbjct: 529 VHDEVQSETHPDISKAYAETLADCIREAG-EHFDMRCPLAGAYDIGKNWKDTH 580


>gi|325115196|emb|CBZ50752.1| hypothetical protein NCLIV_012190 [Neospora caninum Liverpool]
          Length = 1235

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/351 (25%), Positives = 151/351 (43%), Gaps = 70/351 (19%)

Query: 689  PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI----------------------- 725
            P     +  RV T ++   T+TGRL+S  PNLQNIP                        
Sbjct: 882  PALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQNIPKVMVLPSLSSLTSSSSSCSSSSPS 941

Query: 726  ------------------KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
                              KT   ++  R  +   +  +++ADY+QIE+R+LAH     PL
Sbjct: 942  SDVSPSSPSSSRLRYTLPKTVNCREAFRDDVQDGSAVVVAADYAQIEMRLLAHFCGKGPL 1001

Query: 768  YQVF--------------------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
              +                     +  +D++R +AA    +   +V+ ++R   K    +
Sbjct: 1002 QSLLTGRDTREARGSAPDDESETSKEPIDLYREMAALYAEIPPSQVTKELRDKVKVTCLA 1061

Query: 808  IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
            +IYG     +A Q+ I  + A+ +  ++   FP +  +I       R++G+V T+ GRR 
Sbjct: 1062 LIYGSGTCTIARQMNISLAAASAFRSKFLFVFPDVSHFIRSIVAKGREDGFVTTLTGRRR 1121

Query: 868  HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED-----HKLATKMLL 922
            +  E  S  S +R + ER ++N+ IQGSA+DI + AM+ +   L       H L  ++LL
Sbjct: 1122 YIPEAKSNSSHVRALGERLSVNSCIQGSASDIMKIAMMRLQAELLSFPWDPHALPPRVLL 1181

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +HDELV     + +   S++I           + + VPL V+I     W 
Sbjct: 1182 SVHDELVMHCSLKHLQPLSKMIRKC----LTENMPVDVPLDVSISAGPTWG 1228



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 18/165 (10%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           S++   AI  + + L    LLR      +L+      + PM  +++ +++TGI I     
Sbjct: 654 SRIFHDAILLARLSLASRHLLR----CHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCH 709

Query: 596 KQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKT--------- 645
           +Q+ + + + L+++E+ +   +G     +SSP QL ++LF  L  P  A+T         
Sbjct: 710 EQLKSALDEALVAVEKEVNRTAGTSSVQVSSPAQLSNLLFDHLALPLPARTFAAVRGNRP 769

Query: 646 ----KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
               K    ++TA+++ Q     +P++  I  +R L+K++STY +
Sbjct: 770 RRAAKRTLARSTAEEILQEIVDLHPVVPLIQNFRSLAKLRSTYLE 814


>gi|294083961|ref|YP_003550718.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663533|gb|ADE38634.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 587

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/580 (15%), Positives = 204/580 (35%), Gaps = 83/580 (14%)

Query: 448 EILSYLKKFFENEHFL---KIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD 504
           +I + +KK  E    +    +GH++     V   + +      D +++S ++ +   + D
Sbjct: 40  DIKAGMKKLAEATEIIGHNILGHDVPALMKVYPNFSLDGVKLTDTLVLSRLITADLRNDD 99

Query: 505 ------IASIAQKWL--------SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
                 I    +K+          Y   E            + +   +Q++  ++  V  
Sbjct: 100 YERILSIDDFPRKYYGSHSLKAWGYRLGEYKGDFGEQTDWSEWTQG-MQDYCEQDVVVNY 158

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
            +W  L P    +         +  M ++  ++   G   + +    +  +++     LE
Sbjct: 159 AVWKHLDP----DSYSQRAIDFEHKMAEICHRIGKAGWHFNVEKAGILYGQLAGEKAQLE 214

Query: 611 ENIYDL----------------------SGEK--------FNLSSPKQLGDILFTKLKFP 640
             + +L                      + E         FN +S K +   L  K  + 
Sbjct: 215 SELKELFPPWTKEEIFIPKRNNKTLGYVADEPFIKCKEITFNPNSRKHIQRCLMDKYDWK 274

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD---SLPNHINKRTQ 697
               T +G  K        ++    P  K +     L K     A+   +    +   T 
Sbjct: 275 PRQFTYSGDAKIDEGV---LSRLPYPEAKKLARSFLLQKRIGMLAEGNNAWLRLVEGNT- 330

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            +    +    +TGR      N   +P ++   G++ R  F  P    L+ +D S +ELR
Sbjct: 331 -LCHVINPNGAVTGRATHFNFNTAQVPSVRAPYGKECRELFGVPEGYSLVGSDLSGVELR 389

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
            LA++ +              + ++ A+I   N+  +    R  AKT  + +IYG    R
Sbjct: 390 CLANVLQD--------QGKYANIILNADIHLANMHSMGLTSRDQAKTAIYCMIYGGGDAR 441

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           L   +    +E       +    P   + + + K  V + G++  + GR++         
Sbjct: 442 LGEVVGKGAAEGRTLRNNFMKANPAFADLVRQLKQVVTKRGHLVGLDGRKL--------- 492

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
                +   A +N  +Q +AA ++++ +  +   +    +  +++  +HDE+  +V + +
Sbjct: 493 ----AVRGHAQLNVLLQSAAALLSKKWVELIDTEIATQGIDAEIIAWVHDEVQIKVRKGD 548

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                 I     E+A       ++P++    +  NW E +
Sbjct: 549 EENVGHITGRMAEEAG-KFFKFKIPIESEFNIGRNWAETH 587


>gi|70949566|ref|XP_744181.1| DNA polymerase 1 [Plasmodium chabaudi chabaudi]
 gi|56524028|emb|CAH74320.1| DNA polymerase 1, putative [Plasmodium chabaudi chabaudi]
          Length = 1069

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 164/353 (46%), Gaps = 50/353 (14%)

Query: 644  KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
            K    + +      E+       II NI  +R+  K+   Y ++LP HI K T ++H  +
Sbjct: 660  KIIIDELEKNNYVGEKEKENIKQIISNIKLYRESKKLFQNYIENLPKHIQKNTNKIHCNF 719

Query: 704  SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP------------TKKLISADYS 751
            +     TGRL+  +PNLQNI  K      ++   I P              + L++ DY 
Sbjct: 720  NQLGASTGRLSCDQPNLQNIHSKFRCTISLKNDDIKPISVKTKHVKNKSVNQNLLTFDYK 779

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            Q+EL ++A+++  + L ++  NS D+    A  +F  N   V+ ++RR  KT+ + I+YG
Sbjct: 780  QMELFVMAYLSFDSQLLKMLNNS-DVFVETAKVLFNTN--DVTKELRRMTKTVIYGILYG 836

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
             S   LA  L +  + A   I  +F+ +P + ++++K K  V+    V T+ GR+   D 
Sbjct: 837  QSENGLAKNLLVSENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIGRKRLVDP 896

Query: 872  INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-------------------- 911
                         R ++N PIQG AADI + A++S HK L                    
Sbjct: 897  -TIKNK------YRISMNTPIQGCAADIMKFALLSCHKILSYFDNPNQDIDTFLKMNNIN 949

Query: 912  -------EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
                   +++  +TK++LQIHDEL+F+  E   T   Q++   +E + L  I 
Sbjct: 950  ISLLKKYKNYIKSTKLILQIHDELLFQCDENG-TKIIQLLNPVLENSFLNLIK 1001



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 497 DSGRSSH--DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +   ++      ++  K ++  +K +  +++S   I +I++  +  + I  +  ++ L+ 
Sbjct: 361 NPNENNFKFTFTNVEVKHINNIKKIVFGNKRS---IYEITEEDMMSYCISRNIFLIILFN 417

Query: 555 LLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
            L   L     +L +Y ++++P+I  +S++E  GI ++Q  ++++    +  L+  ++ I
Sbjct: 418 YLINLLKNNMNILTLYIKVEQPLIFCISEIEKEGIYLNQKKIQEIQNNSNDPLM-YKKQI 476

Query: 614 YDLSGEKFNLSSPKQLGDILFTKL 637
             L G   NL+S KQ+  +L   L
Sbjct: 477 EQLCGYDINLNSSKQVSSLLSKAL 500


>gi|284047294|ref|YP_003397634.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Conexibacter woesei DSM 14684]
 gi|283951515|gb|ADB54259.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Conexibacter woesei DSM 14684]
          Length = 289

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 14/293 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L  VD  S +YRA++A P   +   G+PVNA+ G  N + +++ +    +      +  
Sbjct: 4   PLLAVDAPSLLYRAWFALPDSIKGAGGMPVNALLGATNAILRIVADRGPRA----VVICN 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
              A  +R E Y  Y A+RP +P+ L  Q        + FG         EADD++ +++
Sbjct: 60  GAEAARYRVERYAGYHADRPPVPDGLAAQFARAGELFEGFGWTLAGSDELEADDLLHSFS 119

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181
               + G    +++ D+D+ Q  + T  +          E++    V +++GIPP  +  
Sbjct: 120 LAEVEAGGGALLMTGDRDMFQCATDTVTVLYLKTGVRGFEEMTPAAVEQRYGIPPALVPD 179

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  D +PG  GIG K AA LL+ +G+LE  L      K  +    + E A   R
Sbjct: 180 FIALRGDPSDGLPGARGIGEKGAADLLRRHGSLEAALAAPDGEKP-RVATALREQAGELR 238

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294
               +  L+  VP+ +P +       +        +AL   +L  R+    D 
Sbjct: 239 DYLAIATLQR-VPVALPAD----RPLDLAGGADEAEALGMNRLARRLRDAGDP 286


>gi|152003765|gb|ABB17229.2| DNA polymerase [Cyanophage S-CBP2]
          Length = 588

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 105/541 (19%), Positives = 198/541 (36%), Gaps = 86/541 (15%)

Query: 486 FEDIMLMSYVLDSGR-----------------SSHDIASIAQKWLSYTRKEILKSRKSSI 528
           + D +++S +  +                     H + +   + L   + E     K   
Sbjct: 84  YYDTLILSRLFFTDMLDRDLRSKPANMPGNLYGRHSLEAWGYR-LGVLKSEY---GKQLH 139

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                   ++ E+  ++    L +  L +PKL          + +     V+++ E  G 
Sbjct: 140 GDWATYTPEMLEYCEQDVEANLPIVKLFQPKLE---QYADAIKTEHDCALVMTRQEQAGF 196

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYD----LSGEKF----------------------- 621
             D D  + + +++   L +L + +      ++G++F                       
Sbjct: 197 PFDIDKARALESKLRSELETLSDEMRATFTFVAGKEFTPARNNATRGYITGCPFTKLTEF 256

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           + +S   +         +     T TG+ K   + L  I   +      ILE ++   + 
Sbjct: 257 SPTSRDHIAWAFQQHRGWEPIEMTDTGKPKIDEEVLNAIGTEEAKKFGRILELQKHVGML 316

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           S   +S    + K  +  H+   + +T TGR A + PNL  +P     G + R  F    
Sbjct: 317 SEGKNSWLQMVEKDGRIHHS--CVLNTATGRNAHMRPNLAQVPS----GHEFRELFTPGE 370

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFE--NSLDIHRMVAAEIFGVNIEKVSPQMRR 799
               + AD S +ELR LAH        +  +     DIH  +A  I+G +        R+
Sbjct: 371 GYVQVGADASGLELRCLAHYLARFDGGKFGKVLLEGDIHTDLA-NIYGTD--------RK 421

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF----PGIHEYIEKTKNFVRQ 855
             KT+ + +IYG    +L      P+  AA   K+          G  + I   +    Q
Sbjct: 422 TGKTVTYCLIYGGGDTKLGLSAGEPKKSAASRGKKIRQAIMKDLDGFAQLITAVQERA-Q 480

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           +G +  I GR             IR     AA+N  +Q   A I ++ ++  ++ L +  
Sbjct: 481 SGVITGIDGR------------PIRMRKAHAALNYLLQSCGAVICKKWVVRSNELLTEAG 528

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +    L  +HDE    V  +++  AS +I  +M+      I  RVPL  +++   NW + 
Sbjct: 529 IDYTPLAFVHDEQQLAVRPDQVEMASTLISLAMKDV-EHAIKFRVPLDCDVQSGANWGDT 587

Query: 976 N 976
           +
Sbjct: 588 H 588


>gi|156122484|gb|ABU50233.1| DNA polymerase [Cyanophage S-CBP1]
          Length = 586

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 122/643 (18%), Positives = 236/643 (36%), Gaps = 119/643 (18%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F I TD +                  +D S        DL+    +     +  T++ ++
Sbjct: 5   FDIETDGL-----------------YNDASCIHCIGIHDLNA--GETYVFNDVGTQQPIT 45

Query: 452 YLKKFFENEHFLKIGHNI-KYDKLVLHRYGISM---RGFEDIMLMSYVLDSGR------- 500
              +  E+   L +GHNI  YD  V+ +         G  D +++S +  +         
Sbjct: 46  KGIQLLEDAD-LIVGHNIIGYDIPVISKLFPWFSRTNGVLDTLVLSRLYHTDLLDIDQKR 104

Query: 501 ----------SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
                       H + +       Y   E   S   +    + S   ++++ I++ NV  
Sbjct: 105 KWKHMPLQLYGRHSLEAY-----GYRLGEYKGSFGKTADWKEWSQD-MEDYMIQDVNVTR 158

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           +LW    P++        + +L+  +  ++++ EI G   D++  ++++  +   L  L+
Sbjct: 159 KLWKHF-PQIPE------WVQLEHRVAQILTEQEIYGWYFDENAARELAQTLYTELDDLK 211

Query: 611 ENIYD----LSGEKF-----------------------NLSSPKQLGDILFTKLKFPSGA 643
             +      ++G +F                       + +S   +  ++     +    
Sbjct: 212 GVLRKRYPYVAGREFTPKRVNRSLGYVEGATCTKLVEFSPTSRDHIAWVMKNLHGWKPDK 271

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KTK G+       L++I   +       LE  +   + S   ++      K     H   
Sbjct: 272 KTKAGKTAIDEIVLKEIGTEEALQFFRCLEITKQLGMLSEGKNAWLKLSRKDRVHHHCSV 331

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
              +T+T R A   PNL  +P   +      R F + P   ++ AD S IELR+LAH   
Sbjct: 332 ---ATVTHRCAHRNPNLAQVPSDLNFR----RLFCASPGHIMVGADLSGIELRMLAHY-- 382

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQL 821
                  +++      ++  +I   N +K+    RR  KT+ ++ +YG       L+   
Sbjct: 383 ----LARYDDGRYGDILLHGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDQKIGLSYDQ 437

Query: 822 RIPRSEA----ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
            +   +A     +  + Y    PG+ + +E TK      G++ +I GR I+ D       
Sbjct: 438 GLSPDKAKQKGKEIRQAYMDAIPGLEKLVEATKK-AADRGFIRSIDGRHINVD------- 489

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLE----DHKLATKMLLQIHDELVFEVP 933
                +   A+N  +Q SA  I +R M+  + +      ++   T  L  IHDEL FE  
Sbjct: 490 -----SSHKALNMLLQSSAGCIAKRWMVIANDNFPTIDNEYLAHTHQLAFIHDELQFECL 544

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                     +    E A     NLR+P+    K+ + W + +
Sbjct: 545 PLYAEDLKTHLELCAELAG-EYYNLRIPIAAEGKIGSTWADVH 586


>gi|83273619|ref|XP_729478.1| 5'-3' exonuclease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487389|gb|EAA21043.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium yoelii yoelii]
          Length = 450

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 136/324 (41%), Gaps = 44/324 (13%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +K     ++DGSS +++ ++  P L  ++D + ++ I GF   L K+     K    S+ 
Sbjct: 125 KKTETFLIIDGSSLLFKNYFGMPFLKNEND-VNLSTIYGFTQSLNKIY----KLFSPSYI 179

Query: 62  AVIFDYPAVTFRN-EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
           A++FD         EIY  YK  R K PE L  QL LV       GI  I  +  E+D+ 
Sbjct: 180 AIVFDSKTSNKEKREIYAQYKTIRKKNPEELYEQLKLVSEFCDVIGIKTIISENVESDNY 239

Query: 121 IATYTYIA---------------------------EKEGFAVTIISTDKDLMQLVSPTTC 153
           IA+                                ++  F + IIS+DKDL+QL+     
Sbjct: 240 IASLVDQIYNTISTNNELESRHYENGLVSLNNDQIKENHFRIVIISSDKDLLQLLEYNDN 299

Query: 154 LYDT---------VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
            ++           K   I+    I++  I P +      L GD  D I GIP IG KT+
Sbjct: 300 AHNNIDISVCQPNRKYRIINAHTFIQEHNIYPNQYSDYLILAGDKTDGISGIPNIGDKTS 359

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             LL+EY +++NIL N   +   K +   +   E   + RKL+ L+ +   +I L     
Sbjct: 360 KYLLKEYYSIDNILKNIQNL-PPKLQTIFINNIENINMFRKLIKLKCETNQSINLSEYKQ 418

Query: 265 EDCNGPRL-ISFLKALEFTKLINR 287
            +     L  + +      KL+ +
Sbjct: 419 VNIKNFELFQNIVDKYSLHKLLKK 442


>gi|313608057|gb|EFR84137.1| 5'-3' exonuclease [Listeria monocytogenes FSL F2-208]
          Length = 221

 Score =  191 bits (484), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 114/220 (51%), Gaps = 7/220 (3%)

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           NE+Y  YKA R   PE ++PQ  L +     FG   + + GFEADD I T T  A     
Sbjct: 5   NELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEADDCIGTITVQASN-TI 63

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
           A T++S DKDL+QL++PT  ++   K     ++ D     ++ GI P + + ++AL GD+
Sbjct: 64  ATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGISPRQFIDVKALMGDT 123

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249
            D  PG+ GIG KTA  L+QE+ ++E +L N  ++K   ++  I E      LS+KL  +
Sbjct: 124 SDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPA-QQTKIQEDLAMLELSQKLARI 182

Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
            T+VP+ I L  L  +        + ++      L   + 
Sbjct: 183 HTEVPLEIDLPSLKYDGFREDA-FAVVEKYGLKTLTRDIE 221


>gi|325989642|ref|YP_004249341.1| 5'-3' exonuclease [Mycoplasma suis KI3806]
 gi|323574727|emb|CBZ40383.1| 5\'-3\' exonuclease [Mycoplasma suis]
          Length = 278

 Score =  190 bits (483), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 139/283 (49%), Gaps = 26/283 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYAT--------PLLSRKHDGLPVNAIAGFCNMLWKLLQNSR 53
                  L+DGSS IY+ F++         P + +K           F N+L   ++   
Sbjct: 3   SAPKRAILIDGSSLIYKCFFSLDAEKKRDTPEMKKK-----------FMNLLLLQVRKWT 51

Query: 54  KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
             +  SH  +IFD    +FR E+ P+YKANR  +P  LL  LP    A    G+  +   
Sbjct: 52  TLNNYSHGVMIFDIDRKSFRTELLPEYKANRDPMPPELLSWLPEAVSAVSETGLKVVYAP 111

Query: 114 -GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK-- 170
            G+EADD+  T +    +  F V I +TD+D  QLV     +Y   K  +I++ + +   
Sbjct: 112 KGYEADDLAGTISKSLSEYDFKVDIFTTDRDFFQLVDHLISVYRVGKSFQIEVNNHLNFS 171

Query: 171 --KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-LINASRIKQK 227
               G+ P ++  L+AL+GD+ DN  GIP IG KTA  L+Q++   ENI L +   I+++
Sbjct: 172 QLNEGLLPSQIPLLKALSGDASDNYSGIPKIGPKTATKLIQQFKT-ENIFLSSLEEIQEE 230

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           K R++ILE  E  +L  K+  ++TD+     +   +L     P
Sbjct: 231 KLRQSILENEEQIKLFLKISRIKTDLDYKFEISDFLLGKPTTP 273


>gi|226306651|ref|YP_002766611.1| 5'-3' exonuclease [Rhodococcus erythropolis PR4]
 gi|226185768|dbj|BAH33872.1| probable 5'-3' exonuclease [Rhodococcus erythropolis PR4]
          Length = 321

 Score =  190 bits (483), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 122/265 (46%), Gaps = 33/265 (12%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             L L+DG+S  +RAFYA P      DG PVNA+ GF +M+  L+   +   +A    + 
Sbjct: 3   GPLLLLDGASLWFRAFYALPESFVDPDGRPVNAVRGFTDMVASLITKHQPSRLAVCLDLD 62

Query: 65  FDYPAVTFRNEIYPDYKANR---------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
           +      FR +  P YKA+R          ++P+ L PQ+ ++     A GI      G 
Sbjct: 63  W---RPQFRVDAVPTYKAHRVEEGSDGSSEEVPDTLTPQVDMIMDVLAAAGIATAGAVGL 119

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKIDIEHV 168
           EADD++ T    A +      ++S D+DL+Q+V+                + E      V
Sbjct: 120 EADDVLGTLA--ATEREDLTVVVSGDRDLLQVVTDEYVPVRVLYVGRGLSRAELFGPVEV 177

Query: 169 IKKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            +K+G+P ++       L  L GD+ D +PGI G+G KTA+ L+  YG+L  +   A+  
Sbjct: 178 AEKYGVPGDRAGEAYAELAVLRGDASDGLPGIKGVGEKTASTLMLRYGSLAGLRAAAADP 237

Query: 225 K---QKKRRENI-----LEYAETAR 241
           +    K  R  +     + + + A 
Sbjct: 238 ESDMAKGIRAKLTSPEAIAHLDAAL 262


>gi|262168682|ref|ZP_06036377.1| probable exodeoxyribonuclease IX [Vibrio cholerae RC27]
 gi|262022800|gb|EEY41506.1| probable exodeoxyribonuclease IX [Vibrio cholerae RC27]
          Length = 210

 Score =  190 bits (483), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 4/206 (1%)

Query: 61  FAVIFDY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
              +FD+      +R E+ P YKANR  +P++L   L  ++ A    GI ++  +G EAD
Sbjct: 1   MIAVFDHHLSDRGWRAELLPTYKANRKPMPDVLQQGLDSIQDAWWQLGIDSLLSEGDEAD 60

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D++AT           VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P +
Sbjct: 61  DLVATLACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQ 120

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           +     LTG S   IPG+ GIG K A  +L ++ ++E    +       K R+ +  + E
Sbjct: 121 LTDYWGLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYASPE--LPAKYRKKLDPHIE 178

Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL 264
            AR+ +++  L+TD+ +   L+ +  
Sbjct: 179 MARICKQVSALKTDIELGFNLQDIRF 204


>gi|262198341|ref|YP_003269550.1| 5'-3' exonuclease, SAM-fold domain protein [Haliangium ochraceum
           DSM 14365]
 gi|262081688|gb|ACY17657.1| 5'-3' exonuclease, SAM-fold domain protein [Haliangium ochraceum
           DSM 14365]
          Length = 294

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/290 (32%), Positives = 144/290 (49%), Gaps = 11/290 (3%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + LVDG+  ++RA+Y     ++  DG  V A  G    L + L    +E   +H AV FD
Sbjct: 3   VHLVDGTFELFRAYYGGRP-AKAPDGAEV-AEVGATRTLMRSLLALVREPEVTHVAVAFD 60

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FRNE++  YK      PE LL Q  L   A +A G+    ++ +EADD +A    
Sbjct: 61  TVIESFRNELFDGYKTGAGIEPE-LLAQFALAEEAAEALGLVVWRMRRYEADDALAAGAA 119

Query: 127 IAEKEGF--AVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
              ++     V + S DKDL Q V        D ++++ +D   VI+K+G+PP  +    
Sbjct: 120 RYAEDARVTRVLLCSPDKDLAQCVRGERVVCLDRMRKKLLDEAGVIEKFGVPPASIPDYL 179

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE-----NILEYAE 238
           AL GDS D IPG+P  G K+ A +L  YG+L+ I   AS  + K R       ++ E  E
Sbjct: 180 ALVGDSADGIPGLPRWGAKSTATVLAHYGDLDAIPDQASDWQVKVRGADGLATSLRERRE 239

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
            ARL R+L  LR+DVP++  L+ L  +     +L +    +   +   RV
Sbjct: 240 DARLYRELARLRSDVPLSESLDDLEWQGAPREQLEALCARIGDARFTQRV 289


>gi|237651592|ref|YP_002899062.1| DNA polymerase [Roseophage DSS3P2]
 gi|220898062|gb|ACL81320.1| N4 DNA pol-like protein [Silicibacter phage DSS3phi2]
          Length = 876

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 135/663 (20%), Positives = 240/663 (36%), Gaps = 117/663 (17%)

Query: 375 KDIQQWVQKLETIGS-ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
           K+   W+ KL  +    S  I   ++  + +    I     DQ +  +F+V         
Sbjct: 166 KEKLDWLDKLIEMDVDLSCDIEGFSLKHYDAGIGTITFCW-DQHNGIAFEV--------- 215

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEH---FLKIGHNIKYDKLVL-------------- 476
               D+T        +   LK FF          I HNI YD  VL              
Sbjct: 216 ----DNTKTKAEDHVLRQALKTFFYRYRATGRRMIYHNICYDAYVLIYQLFMDHILDQEG 271

Query: 477 --HRYGISMRGFEDIMLMSYVL-DSGRSSH-DIASIAQKWLSYTRKEILKSRKSSIPIDK 532
                 + +  +E   L++Y+  +S   +   + + AQ++      E ++       I +
Sbjct: 272 FLEGLDVMLENWECTQLITYLATNSCAGNELGLKAQAQEFAGNYAVEDIQ------DITQ 325

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I   ++ E+ + +      ++      +I ++   +Y  L K  +  + QM++TG+ ++ 
Sbjct: 326 IELPKLLEYNLVDGLSTWFVYNKHYQTMINDQQFEIYTGLFKDAVKDIIQMQLTGLPVNM 385

Query: 593 DLLKQVSAEISKN-----------------LLSLEENIYDLSGEK--------------- 620
           D + +++ ++                    +  LEEN      EK               
Sbjct: 386 DKVIKLNDQLGAESEHNVWKMLQTKIVQGFVYQLEENALKKKNEKLKTKVVTRVDLGSTQ 445

Query: 621 -----FNLSSPKQLGDILF--TKLKFPSGAKTKTGQWKTTAQDLEQI-----NCGDNPII 668
                FN  S  QL  +L+    L  P    T +G   T A  LE++     +      +
Sbjct: 446 DLMVAFNPGSAPQLQRLLYSDEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKEFL 505

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA--STMTGRLASLEPNLQNIPI- 725
             +LE++  + I ST+  +            + F +     T++GRL+S  PNLQNIP  
Sbjct: 506 NILLEYKASAIILSTFLPAFLKACPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIPSS 565

Query: 726 -----KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
                K+ L + I++ F +PP    +  D+  +E RI A   K     +V+ +  D H +
Sbjct: 566 AGGPLKSRLAKLIKKCFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSL 625

Query: 781 VAAEIFGVNIEKVSPQ--------------MRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            A   FG  +  + P               +R+ +K   F++ Y  +   L       + 
Sbjct: 626 RAYGYFGDQMPDIDPSSVDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNCGFSKE 685

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD----EINSPKSSIRNI 882
           +A D   +Y   +    EY+EK      ++GY+   FG R+        I     + +  
Sbjct: 686 KAQDIENKYKKMYKVSIEYVEKKLEQATRDGYITVAFGLRVRTPLLAQTILGTNKTPKEA 745

Query: 883 NE--RAAINAPIQGSAADITRRAMISVHKSLE--DHKLATKMLLQIHDELVFEVPEEEIT 938
               R A NA  Q     +  RA     K +    HKL  K    IHD   + V +    
Sbjct: 746 AAEGRTAGNAMGQSFCM-LNSRAASEFMKKVRASKHKLDIKPCAHIHDAQYYLVRDGAYE 804

Query: 939 TAS 941
              
Sbjct: 805 ALM 807


>gi|321309590|ref|YP_004191919.1| DNA polymerase I: 5'-3' exonuclease [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801434|emb|CBY92080.1| DNA polymerase I: 5'-3' exonuclease [Mycoplasma haemofelis str.
           Langford 1]
          Length = 279

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 136/276 (49%), Gaps = 18/276 (6%)

Query: 8   FLVDGSSFIYRAFYATP--LLSRKHDGLPVNAIAG-----FCNMLWKLLQNSRKESIASH 60
            ++DG++FIY+A++A+   L+  K     ++   G       NM   LL   RK+    +
Sbjct: 7   VIIDGNAFIYKAYFASQAELIKSKKPDEEISKFFGRTVQVVLNMCKPLL--LRKDYK--Y 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-GFEADD 119
             V+FD    TFR E + +YKANR  +P  LL  L  ++      G   I     +E DD
Sbjct: 63  AVVVFDSSKKTFRQEKFQNYKANRASMPAPLLKGLDSIKSMLMGLGFRIINAPQNYEGDD 122

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW-----GI 174
           +I T +++      +  I STD+DL+QLV+    +     +     E+  +++     G+
Sbjct: 123 VICTLSHLFHNREVSTDIFSTDRDLLQLVTENITVNILRSKGLPPQEYKHEEFSTLTGGL 182

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
            P ++  L+A+ GDS DN  GIPGIG KTA  LL++Y  + NI  N  ++   + R  ++
Sbjct: 183 SPSQIPQLKAMAGDSSDNYGGIPGIGSKTAMELLKKYSTIANIYENLDKLPD-RIRGKLM 241

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           E+ +T  L  ++     D+ I   L+     + +G 
Sbjct: 242 EHKKTVDLFLEISTTVKDIEIPKDLDSYTKNEASGD 277


>gi|220916831|ref|YP_002492135.1| 5'-3' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954685|gb|ACL65069.1| 5'-3' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 319

 Score =  189 bits (481), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 95/316 (30%), Positives = 142/316 (44%), Gaps = 9/316 (2%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDG+  ++RA ++     R  DG  V A  G    L  LL  +      +H AV F
Sbjct: 2   RLHLVDGTYELFRAHFSGRPGHRAPDGREVKATLGMAASLLALLHEAG--EAVTHVAVAF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  +FRN+++  YK+     PE+L         A +A G+    +   EADD +AT  
Sbjct: 60  DRPIRSFRNDLWAGYKSEEGVEPELLAQLEAA-EEAARALGLVVWSMDALEADDALATAA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQ-LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                E   V I++ DKDL Q L        D ++  + D   ++ + GI PE +    A
Sbjct: 119 ARFRDEVEQVRILTPDKDLGQCLRGRRVVQVDRMRGRETDEAALLARRGIQPESVPDWLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-----KRRENILEYAET 239
           L GD+ D IPG+PG G +TA+ LL  YG+LE++  + +R         K    + E  E 
Sbjct: 179 LVGDTADGIPGLPGFGERTASALLAVYGHLEDVPADPARWPAGVRGAAKLARALEEGREA 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
           A L R+L  L TD P+   LE L     +  RL ++  +L   +L+  +       A   
Sbjct: 239 ALLYRRLATLVTDAPLAEGLEALRWPGLSRERLGAWAASLGAERLVQGLEARPARWAGPG 298

Query: 300 EPVVLDINTTENKGIA 315
                     E + +A
Sbjct: 299 GAPPPAAGQGEARDVA 314


>gi|237651508|ref|YP_002898979.1| DNA polymerase [Roseophage EE36P1]
 gi|220898140|gb|ACL81397.1| N4 DNA pol-like protein [Sulfitobacter phage EE36phi1]
          Length = 876

 Score =  189 bits (481), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 132/663 (19%), Positives = 240/663 (36%), Gaps = 117/663 (17%)

Query: 375 KDIQQWVQKLETIGS-ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
           K+   W+ KL  +    +  I   ++  + +    I     DQ +  +F+V+        
Sbjct: 166 KEKLDWLDKLIEMDVDLTCDIEGFSLKHYDAGIGTITFCW-DQHNGIAFEVDNTQTKAED 224

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEH---FLKIGHNIKYDKLVL-------------- 476
           H  +               LK FF          I HNI YD  VL              
Sbjct: 225 HVLR-------------QALKTFFYRYRATGRRTIYHNICYDAYVLIYQLFMDHILDQEG 271

Query: 477 --HRYGISMRGFEDIMLMSYVL-DSGRSSH-DIASIAQKWLSYTRKEILKSRKSSIPIDK 532
                 + +  +E   L++Y+  +S   +   + + AQ++      E ++       I +
Sbjct: 272 LLEGLDVMLENWECTQLITYLATNSCAGNELGLKAQAQEFAGNYAVEDIQ------DITQ 325

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           I  +++ E+ + +      ++      +I ++   +Y  L K  +  + QM++TG+ ++ 
Sbjct: 326 IELAKLLEYNLVDGLSTWYVYNKHYQTMINDQQYEIYTGLFKDAVKDIIQMQLTGLPVNM 385

Query: 593 DLLKQVSAEISKN-----------------LLSLEENIYDLSGEK--------------- 620
           D + +++ ++                    +  LEE+      EK               
Sbjct: 386 DKVIKLNNQLGAESEHNVWKMMQTKIVQGFVYQLEEDALKKKNEKLKTKVVTRADLGSTQ 445

Query: 621 -----FNLSSPKQLGDILF--TKLKFPSGAKTKTGQWKTTAQDLEQI-----NCGDNPII 668
                FN  S  QL  +L+    L  P    T +G   T A  LE++     +      +
Sbjct: 446 DLMVAFNPGSAPQLQRLLYSDEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKEFL 505

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA--STMTGRLASLEPNLQNIPI- 725
             +LE++  + I ST+  +            + F +     T++GRL+S  PNLQNIP  
Sbjct: 506 NILLEYKASAIILSTFLPAFLKACPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIPSS 565

Query: 726 -----KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
                K+ L + I+  F +PP    +  D+  +E RI A   K     +V+ +  D H +
Sbjct: 566 AGGPLKSRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSL 625

Query: 781 VAAEIFGVNIEKVSPQ--------------MRRHAKTINFSIIYGISPFRLATQLRIPRS 826
            A   FG  +  + P               +R+ +K   F++ Y  +   L       + 
Sbjct: 626 RAYGYFGDQMPDIDPSSVDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNCGFSKE 685

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD----EINSPKSSIRNI 882
           +A D   +Y   +    E++EK      ++GY+   FG R+        I     + +  
Sbjct: 686 KAQDIENKYKKMYKVSIEFVEKKLEQATRDGYITVAFGLRVRTPLLAQTILGTNKTPKEA 745

Query: 883 NE--RAAINAPIQGSAADITRRAMISVHKSLE--DHKLATKMLLQIHDELVFEVPEEEIT 938
               R A NA  Q S   +  RA     K +    HKL  K    IHD   + V +    
Sbjct: 746 AAEGRTAGNAMGQ-SYCMLNSRAASEFMKKVRVSKHKLDIKPCAHIHDAQYYLVRDGAYE 804

Query: 939 TAS 941
              
Sbjct: 805 ALM 807


>gi|197122061|ref|YP_002134012.1| 5'-3' exonuclease [Anaeromyxobacter sp. K]
 gi|196171910|gb|ACG72883.1| 5'-3' exonuclease [Anaeromyxobacter sp. K]
          Length = 319

 Score =  189 bits (481), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDG+  ++RA ++     R  DG  V A  G    L  LL  +      +H AV F
Sbjct: 2   RLHLVDGTYELFRAHFSGRPGHRAPDGREVKATLGMAASLLALLHEAG--EAVTHVAVAF 59

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           D P  +FRN+++  YK+     PE+L         A +A G+    +   EADD +AT  
Sbjct: 60  DRPIRSFRNDLWAGYKSEEGVEPELLAQLEAA-EEAARALGLVVWSMDALEADDALATAA 118

Query: 126 YIAEKEGFAVTIISTDKDLMQ-LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                E   V I++ DKDL Q L        D ++  + D   ++ + GI PE +    A
Sbjct: 119 ARFRDEVEQVRILTPDKDLGQCLRGRRVVQVDRMRGRETDEAALLARRGIQPESVPDWLA 178

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-----KRRENILEYAET 239
           L GD+ D IPG+PG G +TA+ LL  YG+LE++  + +R         K    + E  E 
Sbjct: 179 LVGDTADGIPGLPGFGERTASALLAVYGHLEDVPADPARWPAGVRGAAKLARALEEGREA 238

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
           A L R+L  L TD P+   LE L     +  RL ++  +L   +L+  +  
Sbjct: 239 ALLYRRLATLVTDAPLAEGLEALRWPGLSRERLGAWAASLGAERLVQGLEA 289


>gi|169835973|ref|ZP_02869161.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 180

 Score =  189 bits (481), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/185 (35%), Positives = 100/185 (54%), Gaps = 6/185 (3%)

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           + +V+   RR+AK INF ++YG+SP  L+    +   EA  +I  YF+    I E+IE+T
Sbjct: 1   MAQVTSNQRRNAKVINFGVLYGMSPHGLSAATGMSFIEAKKFIDDYFNLRRPIREFIEET 60

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
               +  GYV T FGRR    ++ S    +R   +RAA N PIQG+ AD+ +RAM+   +
Sbjct: 61  LEKAKNEGYVTTYFGRRRPTPDVKSSNFMVREAAKRAAANMPIQGTEADLMKRAMLRTEE 120

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969
            L +     + +LQIHD ++ E P++      +I+   ME        L + LKV+IK  
Sbjct: 121 KLGNLG---EQILQIHDSILVECPKKNADKVVEILRFEMESVAP---ELDIKLKVDIKTG 174

Query: 970 NNWQE 974
            +W E
Sbjct: 175 EHWGE 179


>gi|88857359|ref|ZP_01132002.1| exonuclease IX [Pseudoalteromonas tunicata D2]
 gi|88820556|gb|EAR30368.1| exonuclease IX [Pseudoalteromonas tunicata D2]
          Length = 258

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 128/265 (48%), Gaps = 9/265 (3%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M K  HL ++D  + I R + A        + L   AI    N + + +    K++I SH
Sbjct: 1   MNK--HLLIIDALNLIRRIY-AVDSNQSNQEEL---AIKNAINRVERAVSKLLKQTIPSH 54

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
              +FD    ++R + YPDYK NR  +PE+L   L          G+ +   Q  EADD+
Sbjct: 55  AIAVFD-GENSWRYQFYPDYKLNRKPMPEVLQTNLTHFAKQLTNLGVISYFPQEDEADDV 113

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
           IAT    A K+    TI+STDK  + L++    +YD    + +  + +  K+ +   ++ 
Sbjct: 114 IATLADKAAKQHINSTIVSTDKGFLPLLNQHIQVYDYFTAQYVSDKTIFDKFSVNKNQLT 173

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
              AL GD  ++IPG+ GIG KTA  LL +Y ++ + L +      +K R  I       
Sbjct: 174 EFWALAGDPTNDIPGVKGIGKKTAQTLLAQYPSVTHALASTE--LNEKIRLKIESELNQY 231

Query: 241 RLSRKLVMLRTDVPITIPLEHLILE 265
            +S+ L  LR D+P+   L+ L L+
Sbjct: 232 VISKTLATLRVDLPLGFSLKDLRLK 256


>gi|284054557|ref|ZP_06384767.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 197

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 15/201 (7%)

Query: 15  FIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV 70
             +RA+YA         R   G+P +   GF   L +++   + E      A+ FD    
Sbjct: 1   MAFRAYYAFGKSRNGGLRTSTGIPTSVCFGFIKSLLEVIDTYKPEL----VAIAFDRAEP 56

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           TFR+E   +YKA+R + P   +  +  ++   + F IP   + G+EADD++ T       
Sbjct: 57  TFRHEADANYKADRAETPADFIEDINNLQELLEGFRIPIFSVAGYEADDVLGTLANRGSA 116

Query: 131 EGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            G+ V I+S D+DL QL+                   ++     V +K  I PE++V  +
Sbjct: 117 AGYQVKILSGDQDLFQLIDEQKQITVLHLSHGKGSSPQEFAAAQVYEKLSIKPEQVVDYK 176

Query: 184 ALTGDSIDNIPGIPGIGYKTA 204
           AL GD  D IPG+ GIG KTA
Sbjct: 177 ALCGDKSDCIPGVRGIGEKTA 197


>gi|162421325|ref|YP_001607517.1| exonuclease IX [Yersinia pestis Angola]
 gi|269969685|sp|A9R2J1|XNI_YERPG RecName: Full=Protein Xni
 gi|162354140|gb|ABX88088.1| exodeoxyribonuclease-9 (Exodeoxyribonuclease IX)(Exonuclease IX)
           (Exo IX) [Yersinia pestis Angola]
          Length = 218

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 16/207 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A         G P   +    + L +L+Q+S+     SH   +F
Sbjct: 4   HLLIVDALNLIRRI-HAV-------QGSP--CVKACQHALQQLIQHSQ----PSHAVAVF 49

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++  PDYKA R  +P+ L  ++PL+R A    G+      G EADD+ AT
Sbjct: 50  DEDDRSDSWRHQCLPDYKAGRSPMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                   G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 110 LVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGVLPRQLPDYW 169

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQE 210
            L G S   IPG+ G+G KTA LLLQ+
Sbjct: 170 GLAGISSSKIPGVAGVGAKTATLLLQQ 196


>gi|229915869|ref|YP_002884515.1| 5'-3' exonuclease [Exiguobacterium sp. AT1b]
 gi|229467298|gb|ACQ69070.1| 5'-3' exonuclease [Exiguobacterium sp. AT1b]
          Length = 260

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 123/267 (46%), Gaps = 19/267 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L LVDG + + R ++AT    R  D      + G    +     +       SH A  +
Sbjct: 2   KLILVDGFNLLSRYYFAT-ERRRAQDPEVT--VKGLLRKVDSWTTDF------SHIAFFW 52

Query: 66  D-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D     T R  +YP+YKA R  +PE L      +R A    GI   E+ G+EADD++   
Sbjct: 53  DGTRESTHRYAMYPEYKATRNGLPEPLFEDYLKLRTALDERGILQSELTGYEADDLMGAV 112

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCL 182
                 E +   + S+D+DL+QL+SP        K E+  ++       +G+ P + V +
Sbjct: 113 ATAFPGESY---LYSSDRDLLQLLSPNVFQIMPKKGEEQLVNEASFELMYGVKPYQFVDV 169

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS----RIKQKKRRENILEYAE 238
           +AL GDS DNIPG+ GIG KTA +L+Q Y  +E + ++          +K  + +  + E
Sbjct: 170 KALQGDSSDNIPGVRGIGPKTATILIQHYDTIETLYMHVQNETLEAPHQKYAKKLDGHEE 229

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILE 265
            A LS++L  +    P+    E     
Sbjct: 230 IALLSKRLSQIDIHAPVNTDWEAYRFG 256


>gi|66394986|ref|YP_240958.1| ORF037 [Staphylococcus phage G1]
 gi|62637008|gb|AAX92119.1| ORF037 [Staphylococcus phage G1]
 gi|182627951|gb|ACB89113.1| gp ORF120 [Staphylococcus phage A5W]
          Length = 286

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
           +RI+    K   + Q F N  DIH+  A+ ++   +E+V+ + R+  K +NF + +G SP
Sbjct: 1   MRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESP 60

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
           F  A +  +  SEA +  ++YF   P +   I+    FV+Q GYV+T+ G R       S
Sbjct: 61  FSFAGKNNMEVSEAEEIFEKYFQTKPSVKTSIDNVHEFVQQYGYVDTMHGHRRFIRSAQS 120

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               I+N   R + N  IQGS + +T  ++  +   ++   L +K++  +HD ++ + P 
Sbjct: 121 TDKKIKNEGLRQSFNTIIQGSGSFLTNMSLTYLDDFIQSRNLKSKVIATVHDSILIDCPP 180

Query: 935 EEITTASQIIVHSMEK-------ACLPKINLRVPLKVNIKVSNNWQE 974
           EE    +++ +H ME        A +    ++ P++ ++++  N+ +
Sbjct: 181 EEAKIMAKVTIHIMENLPFDFLKAEIDGKEVQYPIEADMEIGLNYND 227


>gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 138

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/138 (50%), Positives = 98/138 (71%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
            G++IR+AFI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+
Sbjct: 1   EGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGL 60

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
            ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA  Y+  YF R+PG+ EY+E+
Sbjct: 61  PLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMER 120

Query: 849 TKNFVRQNGYVETIFGRR 866
           T+   ++ GYVET+ GRR
Sbjct: 121 TRAQAKEQGYVETLEGRR 138


>gi|167399754|ref|ZP_02305272.1| exodeoxyribonuclease-9 (Exodeoxyribonuclease IX)(Exonuclease IX)
           (Exo IX) [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167050462|gb|EDR61870.1| exodeoxyribonuclease-9 (Exodeoxyribonuclease IX)(Exonuclease IX)
           (Exo IX) [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 218

 Score =  188 bits (477), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 4/199 (2%)

Query: 36  NAIAG--FCNMLWKLLQNSRKESIASHFAVIFDY--PAVTFRNEIYPDYKANRPKIPEML 91
           +A+ G          LQ   + S  SH   +FD    + ++R++  PDYKA R  +P+ L
Sbjct: 6   HAVQGSPCVKACQHALQQLIQHSQPSHAVAVFDEDDRSDSWRHQCLPDYKAGRSPMPDNL 65

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             ++PL+R A    G+      G EADD+ AT        G  VTI+STDK   QL++P 
Sbjct: 66  QQEMPLIRQAFNELGVACWHSPGNEADDLAATLVVKVAGAGHQVTIVSTDKGYCQLLAPN 125

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             + D  ++  +D+  V +++G+ P ++     L G S   IPG+ G+G KTA LLLQ+ 
Sbjct: 126 IQIRDYFQKRWLDMPFVKQEFGVLPRQLPDYWGLAGISSSKIPGVAGVGAKTATLLLQQA 185

Query: 212 GNLENILINASRIKQKKRR 230
             LE +  N   I + +RR
Sbjct: 186 DTLEVLYQNLESIPECQRR 204


>gi|77362377|ref|YP_341951.1| exonuclease IX [Pseudoalteromonas haloplanktis TAC125]
 gi|123586738|sp|Q3ICC5|XNI_PSEHT RecName: Full=Protein Xni
 gi|76877288|emb|CAI89505.1| putative exonuclease IX, 5'-3' exonuclease [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 257

 Score =  187 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 130/262 (49%), Gaps = 8/262 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA-IAGFCNMLWKLLQNSRKESIASHFA 62
           + HL L+D  + I R +          D   + A  A   +   KLL +++    A+H  
Sbjct: 2   KPHLLLIDALNLIRRIYAVDANQKHHSDEQMLKASCARVAHACSKLLSSTK----ATHAI 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    ++R   Y DYK +R  +P++L   L   + A +  GI   E    EADDIIA
Sbjct: 58  AVFD-GDKSWRYHFYKDYKHSRAPMPQILKDALVQFKAAIEETGIVVFEPINDEADDIIA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T    A     +  I+STDK  +  ++    +YD  K+  +D + + +++G+  +K+V  
Sbjct: 117 TLANKASHNNISSVIVSTDKGFLPFLNEHIAVYDYFKKHYLDQDSIKQRFGVEQKKLVEF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            A  GD  ++IPG+ GIG K+A LL+  Y ++E+ L           R+ + E  +   +
Sbjct: 177 WAFAGDKTNDIPGVKGIGTKSAQLLVNNYSSVEDALN--DDALSASLRKKLTENMDMYVI 234

Query: 243 SRKLVMLRTDVPITIPLEHLIL 264
           S++LV LRTD+ +   L+ L L
Sbjct: 235 SKQLVSLRTDINLGFSLKQLRL 256


>gi|260878762|ref|ZP_05891117.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308091309|gb|EFO41004.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034]
          Length = 683

 Score =  187 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 124/718 (17%), Positives = 231/718 (32%), Gaps = 164/718 (22%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
                + I TD +    +K   IAI  +D  ++  +    + +                 
Sbjct: 2   NERLCYDIETDGLIEEVTKLHCIAIINVDTLEEALYADSLVMM------------TQGTI 49

Query: 447 KEILSYLKKFFENEHFLKIGHNI-KYDKLVLHRY-GISMRGF--EDIMLMS--------- 493
           K+ L  L     N+  L +GHNI KYD  V+++  G  +      D ++ S         
Sbjct: 50  KDGLDRL-----NKASLTLGHNIIKYDHPVINKLTGYELPKDKSFDTLVASRLVFSNIKD 104

Query: 494 --------YVLDSGRSSHDIASIAQKWLSYTRKEIL-----------------KSRKSSI 528
                   Y L     SH + +   +     + E                    ++K   
Sbjct: 105 IDQGNSGKYTLGKLFGSHSLEAWGIRLGGQQKMEYAPVIDPAQPVYDPTVKPKDAKKDPR 164

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
               I    + ++ +++  V ++L+  L  K+           L+     V++Q E  G 
Sbjct: 165 WKGSIFTPMMGDYCMQDVRVNVELFRRLERKIHQLG-YARSMLLEHEAAWVLAQQERNGF 223

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGE----------------------------- 619
           + D++   ++   ++     L   + +  G                              
Sbjct: 224 KFDEEKAIKLLGRLAGRREYLYNKLIETFGGWWVSDGVSVPARTINYKDPTKPSRVQGAP 283

Query: 620 -------KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
                   FN SS + +  +L  +   P    T +G+ K     L+++   D P  + + 
Sbjct: 284 FTKVKWVDFNPSSRRHIIKVLTDRGWTPQ-EFTPSGEAKVDESILKEL---DFPEARLMA 339

Query: 673 EWRQLSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI-KTD 728
           EW  + K     AD      N ++     +    +    +TGR     PN+  +P    +
Sbjct: 340 EWFLVQKRLGQLADGNQAWLNTVHPDGF-IRGSVNPNGAVTGRATHSFPNVAQVPSCSAE 398

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIA---KITPLYQVFENSLDIHRMVA-AE 784
            G + R  F  P    L+ +D S +ELR LA+            V  N  DIH   A A 
Sbjct: 399 YGAECRELFTVPDGWYLLGSDASGLELRCLANFMARYDDGKYIDVVLNG-DIHWSNAQAA 457

Query: 785 IF------GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE----------- 827
            F            +  + RR AKT  ++ +YG        Q+     E           
Sbjct: 458 GFIPKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAELTGQQVGWTEEEYLNWKAKGAHK 517

Query: 828 -----------------------AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
                                    +  K +    P +   I++ K   ++ GY+E I G
Sbjct: 518 PIINRFKRQGKPWTREKICNILKGEEVQKNFMKGLPALKNLIDECKELHKEQGYIEGIDG 577

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM---- 920
           RRI+              +  A++N  +QG+ A + +  ++ + K      L   +    
Sbjct: 578 RRIYTR------------SAHASLNTLLQGAGALVCKAWIVEIEKLAIAEGLKHGIDGDF 625

Query: 921 --LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                +HDE+      +EI      +          + N    L  +  +  +W+E +
Sbjct: 626 MYCAWVHDEVQIACRTKEIAERIGQLCQVAMTNVEKEFNFVCRLDADFDIGKSWKETH 683


>gi|328465063|gb|EGF36337.1| DNA polymerase I [Listeria monocytogenes 1816]
          Length = 141

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 63/145 (43%), Positives = 80/145 (55%), Gaps = 5/145 (3%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N L L+DG+S   RAFYA PLL+    G+  NA+ GF  ML  +L+  +     SH  V 
Sbjct: 2   NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD    TFR+  +  YK  R K P  L  Q P +R    A+ IP  E+  +EADDII T 
Sbjct: 57  FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS 149
           T  AE +G  V II+ D+DL QL S
Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLAS 141


>gi|48429404|gb|AAT42470.1| PolA [Escherichia coli B]
          Length = 179

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 104/179 (58%), Gaps = 5/179 (2%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR 500
                +  L  LK   E+E  LK+G N+KYD+ +L  YGI +RG   D ML SY+L+S  
Sbjct: 1   DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVA 60

Query: 501 SSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             HD+ S+A++WL +     +EI    K+ +  ++I+  +   +A E+++V LQL L + 
Sbjct: 61  GRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMW 120

Query: 558 PKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           P L   K  L+V+E ++ P++ V+S++E  G++ID  +L   S E++  L  LE+  ++
Sbjct: 121 PDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHE 179


>gi|315282488|ref|ZP_07870892.1| DNA polymerase I [Listeria marthii FSL S4-120]
 gi|313613872|gb|EFR87612.1| DNA polymerase I [Listeria marthii FSL S4-120]
          Length = 143

 Score =  187 bits (475), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 4/146 (2%)

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
           D+I RYF  +P + EY++    F ++ GYVETI  RR +  EI S   ++R   ER A+N
Sbjct: 1   DFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMN 60

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
            PIQGSAADI ++AMI + + L+  KL  K+LLQ+HDEL+FE PE EI    +I+   ME
Sbjct: 61  TPIQGSAADIIKKAMILMSERLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVME 120

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEE 975
            A    + L VPLKV+    + W + 
Sbjct: 121 NA----VELSVPLKVDSAFGDTWYDA 142


>gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b]
          Length = 190

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 119/191 (62%), Gaps = 1/191 (0%)

Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
           +LF KL+ P+    K     +T Q       G +P+I+ I + R+L+K+K+TY D+LP  
Sbjct: 1   MLFIKLQLPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTRELAKLKNTYVDALPKL 60

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
           ++ +  R+HT ++     TGRL+S  PNLQNIPI++ LG+KIR AFI+     L+SADYS
Sbjct: 61  VD-KNYRLHTTFNQDVVSTGRLSSTHPNLQNIPIRSTLGKKIRNAFIADEDNILVSADYS 119

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
           Q ELR+ A +A    L   F N +DIH   A++++ + +++V+   RR+AK INF ++YG
Sbjct: 120 QFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVTSNQRRNAKVINFGVLYG 179

Query: 812 ISPFRLATQLR 822
           +SP  L+    
Sbjct: 180 MSPHGLSAATG 190


>gi|156390270|ref|XP_001635194.1| predicted protein [Nematostella vectensis]
 gi|156222285|gb|EDO43131.1| predicted protein [Nematostella vectensis]
          Length = 203

 Score =  187 bits (474), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 111/196 (56%), Gaps = 3/196 (1%)

Query: 749 DYSQIELRILAHIAKITPLYQVFENS--LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           D+  IELR+LA+++    L +VF +S  +DI   + ++  GV   KV  + R   K I +
Sbjct: 1   DFQSIELRLLANLSDDPDLLRVFNDSTSIDIFTKLTSQWLGVPPVKVDFKERERTKRIVY 60

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
           S+IYG+   RL   L +  +EA  +++ +  +FPGI+E+  K       NG+V TIF R+
Sbjct: 61  SVIYGVGRERLGNTLCVEPNEAKGFMESFLGKFPGINEFSRKCIEDCNTNGFVSTIFKRK 120

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIH 925
                I S    IR+  ER A+N  +QGSAAD+ + AMI +  +LE    L  ++LLQIH
Sbjct: 121 RWIPHIKSRDFQIRSQAERQAVNFVVQGSAADLCKSAMIQIVHALEKDVSLKARLLLQIH 180

Query: 926 DELVFEVPEEEITTAS 941
           DEL+ EV + +I    
Sbjct: 181 DELLLEVADTDIDRVK 196


>gi|332533975|ref|ZP_08409827.1| exonuclease IX [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036611|gb|EGI73077.1| exonuclease IX [Pseudoalteromonas haloplanktis ANT/505]
          Length = 257

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 121/262 (46%), Gaps = 8/262 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVN-AIAGFCNMLWKLLQNSRKESIASHFA 62
           + HL L+D  + I R +          D   +    A   +   KLL  S     A+H  
Sbjct: 2   KPHLLLIDALNLIRRIYAVDANQKHHSDEQMIQTCCARVAHACKKLLDTSN----ATHAI 57

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            +FD    ++R   Y DYK +R  +P++L   L   + A +  GI   E    EADDIIA
Sbjct: 58  AVFD-GDKSWRYHFYKDYKHSRAPMPQVLKDALLHFKAAIEETGIVVFEPINDEADDIIA 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
           T  + A       T++STDK  +  + P   +YD  K+  +D   + +++G+   K+V  
Sbjct: 117 TLAFKASNNQITSTVVSTDKGFLPYIGPYITVYDYFKKLYLDETSIKERFGVEQNKLVDF 176

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
            AL GD  ++IPG+ GIG K+A  ++  Y ++E              +  +    +   +
Sbjct: 177 WALAGDKTNDIPGVKGIGTKSAQQIVNNYNSIEQAAE--DESLSPSIKTKLAANMDMYVI 234

Query: 243 SRKLVMLRTDVPITIPLEHLIL 264
           S+ LV LRTD+ +   L+ L L
Sbjct: 235 SKHLVSLRTDINLGFSLKQLRL 256


>gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 562

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 156/429 (36%), Gaps = 71/429 (16%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + + ++M   G+    D  +++  E+           + L+ L E +  
Sbjct: 161 MRLLTTAESAGMLIAAEMRRAGVPWSADRHRKLLDELLGERYPGGLEPQRLVELAEEVSR 220

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P ++    F +     G           +    ++   D+P ++ +L ++
Sbjct: 221 AFGTRVRPDLPAEVVKA-FGRAGITLG-----------STRAWELERIDHPAVEPLLRYK 268

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L ++ + +    L + +  R  R    Y    T++GR  +       IP        +R
Sbjct: 269 KLYRLHTAHGWAWLQSWV--RDGRFRPEYLPGGTVSGRWTTNGGGALQIPK------VVR 320

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++ P  +L+ AD  Q+E R+LA I++   L +V  +  D++  ++   F        
Sbjct: 321 RAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGSGRDLYATLSDRAF-------- 372

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG               +   ++     RFP    Y+++      
Sbjct: 373 SGRRELAKLALLGAVYGQ-----------TSGDGLKHLAALRRRFPAAVAYVDEAARAGE 421

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRN------------------INERAAINAPIQGSA 896
           +   V T  GR        + + +                        R   N  +QGSA
Sbjct: 422 EGRLVRTWLGRTCPPVGGGAEEPADEAGLPREQEEPSYGSTASARARGRFTRNFVVQGSA 481

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CL 953
           AD     + ++ +SL    L  +++   HDE++   P+EE  T  + I  + E A     
Sbjct: 482 ADWALLMLAALRRSLTGAGLRAEIVFFQHDEVIVHCPQEEADTVREAIAEAGETAGRIAF 541

Query: 954 PKINLRVPL 962
               +R PL
Sbjct: 542 GPTPVRFPL 550


>gi|110589136|gb|ABG77077.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 5/156 (3%)

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L I RSEA +Y+  YF R+PG+  Y+E+T+   R+ GYVET+FGRR++  +I +     R
Sbjct: 1   LGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGRRLYLPDIKAR-GPRR 59

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ER AINAP+QG+AADI +RAM++V   +E  +   ++L+Q+HDELV EV E  + TA
Sbjct: 60  SAAERTAINAPMQGTAADIIKRAMLAVDGWIEADRPPLRLLMQVHDELVLEVQESFLETA 119

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            Q +   ME A      L VPL V + + +NW E +
Sbjct: 120 CQHLRDCMESAA----ELAVPLLVEVGIGDNWDEAH 151


>gi|119470909|ref|ZP_01613493.1| exonuclease IX [Alteromonadales bacterium TW-7]
 gi|119445931|gb|EAW27211.1| exonuclease IX [Alteromonadales bacterium TW-7]
          Length = 257

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 10/263 (3%)

Query: 4   ENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           + HL L+D  + I R +   A    S +   +   +         K+L+ +     A+H 
Sbjct: 2   KPHLLLIDALNLIRRIYAVDANQKHSNEKQLVLTCSER-VAQACKKMLRIT----DATHA 56

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
             +FD    ++R   Y  YK +R  +PE L   L   + A +  GI   E    EADDII
Sbjct: 57  IAVFD-GDKSWRYHFYEHYKHSRAPMPETLKSALHHFKSAIEETGIVVFEPINDEADDII 115

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
           AT    A       TI+STDK  +  ++    +YD  K + +D   + +++G+   ++V 
Sbjct: 116 ATLACKAADNKITSTIVSTDKGFLPYLNSEIHIYDYFKRQHLDEPAIHERFGVDKNRLVD 175

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
             AL GD  ++IPG+ G+G K+A  L+  Y ++   L  +  +     R+ +    +   
Sbjct: 176 FWALAGDKTNDIPGVKGVGIKSAQQLVNNYTSINEAL--SDELLNSGLRKKLETNMDMYV 233

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           +S++LV LRTD+ +   L+ L L
Sbjct: 234 ISKQLVSLRTDINLGFSLKQLRL 256


>gi|182437857|ref|YP_001825576.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466373|dbj|BAG20893.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 558

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 154/433 (35%), Gaps = 71/433 (16%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ +++   +           + L  L + +  
Sbjct: 157 MRLLTASESAGMLVAAEMHRDGLPWRADVHRELLTGLLGERYAGGGEPRRLAELADEVSA 216

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +   P             +    ++   D+P ++ ++ ++
Sbjct: 217 AFGRRVRPDLPADVVKA-FARAGIPVK-----------STRRWELEELDHPAVEPLIAYK 264

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I + +    L + + +   R    Y    T++GR  +       IP        IR
Sbjct: 265 KLYRIWTAHGWSWLQDWVREG--RFRPEYQPGGTVSGRWTTNGGGALQIPK------VIR 316

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           +A ++ P  +L+ AD  Q+E R+LA I++   L +V  +  D+++ ++   F  +     
Sbjct: 317 QAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHDGDLYKALSDRAFSGD----- 371

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R HAK      IYG +       L                RFP    Y++       
Sbjct: 372 ---REHAKLAMLGAIYGQTSGDGLKNL-----------AALRRRFPLAVAYVDDAARAGE 417

Query: 855 QNGYVETIFGR------------------RIHYDEINSPKSSIRNINERAAINAPIQGSA 896
           +   V T  GR                          +P         R   N  +QGSA
Sbjct: 418 EGRVVRTWLGRTSPPAASAGQDEEAGLPQEDPEGSGGAPDGGPARARGRFTRNFVVQGSA 477

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CL 953
           AD     + ++ +++ +  L  +++   HDE++   P EE     + I  + E A     
Sbjct: 478 ADWALLMLAALRRTIFEQGLRAQLVFFQHDEVIVHCPAEESAAVVEAIRAAGELAGRTAF 537

Query: 954 PKINLRVPLKVNI 966
            +  +R P    +
Sbjct: 538 GRTPVRFPFTTAV 550


>gi|159483045|ref|XP_001699573.1| hypothetical protein CHLREDRAFT_178318 [Chlamydomonas reinhardtii]
 gi|158272678|gb|EDO98475.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/470 (20%), Positives = 182/470 (38%), Gaps = 109/470 (23%)

Query: 546 SNVILQLWLLLRPK----LIVEKL--LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +   +      RP+    L  + +  +    R+ +    V+++ME+ G  ++   ++++ 
Sbjct: 238 AAAYVFSAERFRPQENSTLKPDSVVVMSDLTRIAQYQDVVLAEMEMAGFGVEVGAMQRLH 297

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
            E                       S ++   +L   L+  +     TG+          
Sbjct: 298 EE-----------------------SVRRRAQVLDENLEIMAPY-DSTGR---------- 323

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                  ++  ++E  +L K+  +Y      H+++RT RV+   +   T TGRL+    N
Sbjct: 324 -------VVHLVMEHARLDKLIQSYTGLFLQHVDRRTGRVYPTLNQVGTATGRLSMSGAN 376

Query: 720 LQNIPIKTDLGQKIRRAF----ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
           L  +P   +   +  R F    ++ P   L++ADYSQ+ELR++AHI +   L   F    
Sbjct: 377 LMALPHDKEEFGEHLRNFRRALVARPGWLLLAADYSQVELRVIAHITQDPTLASAFRERR 436

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835
           D+H   AA +F V +  V+P  R+  K +NF ++YG+   +LA  + +P +EA+D+I  +
Sbjct: 437 DVHAQTAARVFRVPLGAVTPAQRQAGKQVNFGLVYGMGAAKLARDIGLPDNEASDFIHTF 496

Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIF--------------------------GRRIHY 869
              F  +++ +++TK     +GY  ++                            RR   
Sbjct: 497 RDVFATLYDQMDRTKAQAFVSGYATSLRGRRRGFRGAWSGKGLAWLDWQARFEPWRRQQL 556

Query: 870 -----------DEINSPKSSIR--NINERAAINAPIQGSAADITRRAMISVHKSLEDH-- 914
                      + +   +   R      R   N   QGS +DI + AM+    +L     
Sbjct: 557 AAEVLGKLKADEGLAGWRGMDRDDRTTLRELGNMSYQGSTSDIVKAAMVRCTAALGPGPG 616

Query: 915 --KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
                 ++LLQ+         E E+     I           +  L VPL
Sbjct: 617 GINSRAQLLLQV---------EMELERYPVI------DFQFVRAKLTVPL 651


>gi|167946072|ref|ZP_02533146.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 5/156 (3%)

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           + I RSEA +Y+  YF R+PG+  Y+E+T+   R+ GYVET+FGRR++  +I +     R
Sbjct: 1   MGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGRRLYLPDIKAR-GPRR 59

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +  ER AINAP+QG+AADI +RAM++V   +E  +   ++L+Q+HDELV EV E  + TA
Sbjct: 60  SAAERTAINAPMQGTAADIIKRAMLAVDGWIEADRPPLRLLMQVHDELVLEVQESFLETA 119

Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            Q +   ME A      L VPL V + + +NW E +
Sbjct: 120 CQHLRDCMESAA----ELAVPLLVEVGIGDNWDEAH 151


>gi|156122488|gb|ABU50235.1| DNA polymerase [Synechococcus phage S-CBP42]
          Length = 588

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 117/637 (18%), Positives = 225/637 (35%), Gaps = 101/637 (15%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +F I TD +    +K   I    LD  +   F               D TG +   +E 
Sbjct: 3   LAFDIETDGLLRNLTKIHCIVAQDLDTNEVYKF---------------DGTGDHPSIREG 47

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR--------- 500
           L+ LK   E      IG++ +  K V  R+  S     D +++S +  +           
Sbjct: 48  LALLKDADELWGHNIIGYDFEAIKEVFPRWNYS-STVYDTLILSRLFFTDLLDRDFRSRP 106

Query: 501 --------SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
                     H + +   + LS  + E     KS          ++ ++   +  V + L
Sbjct: 107 ANMPAQLYGRHSLEAWGHR-LSVHKSEF---GKSLSGDWSTYSPEMLDYCARDVVVSVSL 162

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
             L   K+            +  +  +++  E  G   D    +++  ++   LL L E 
Sbjct: 163 ARLFTAKVAE---YRDCISTEHRLATIMAWQESEGFPFDVAKAERLEGQLRSELLKLSEQ 219

Query: 613 IYD----LSG-----------------------EKFNLSSPKQLGDILFTKLKFPSGAKT 645
           + +    + G                       ++FN +S + +     T   +     T
Sbjct: 220 MRETFPYVDGGSFTPRTNNGPRGYVKGAAMCRLKEFNPTSRQHIAWAFATFRDWEPKELT 279

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            TG+ K     L +    +      ILE ++     S  A++    +   +        +
Sbjct: 280 DTGKPKIDETTLLEYGTDEAKTFARILELQKHLGQLSEGANAWLKKV--ESDGRIHHSCV 337

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
            +T TGR A ++PNL  +P     G + R  F     +  + AD S +ELR L H     
Sbjct: 338 LNTNTGRQAHMKPNLAQVPS----GHEYRELFHPGANRSQVGADASGLELRCLGHYLARF 393

Query: 766 PLYQVFEN--SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
              +  +     DIH  +A EI+G +        R+  K + + +IYG    +L      
Sbjct: 394 DGGKFAKEVVQGDIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGDSKLGLTAGA 444

Query: 824 PRSEA----ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            +++A     +   R      G        +   + +G ++ + GR I            
Sbjct: 445 SKAQAVKKGKEIRSRIMANLDGFAALNAAVQERAK-SGVLKGLDGRPIRL---------- 493

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
                 AA+N  +Q + A I +  ++  ++ L++  +    +  +HDE+   V   +   
Sbjct: 494 -QGKNHAALNYLLQSAGAVICKLWLLRSYELLDEAGIDYFPMAFVHDEVHISVAPSQAEQ 552

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           A Q+I  +M+     +I  R  L    ++ N+W + +
Sbjct: 553 AGQLIQIAMKDV-EHQIKFRCALDSEYQIGNSWADCH 588


>gi|312197474|ref|YP_004017535.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Frankia sp. EuI1c]
 gi|311228810|gb|ADP81665.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Frankia sp. EuI1c]
          Length = 384

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 106/264 (40%), Gaps = 66/264 (25%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP- 68
           VD  S  +RAFY  P      DG+PVNA+ G  ++L + + + R     +H    FD   
Sbjct: 33  VDTPSLYFRAFYGVPQSVTAPDGMPVNAVRGLLDVLARQIADLR----PAHLVCCFDGDW 88

Query: 69  AVTFRNEIYPDYKANR--------------------------------------PKIPEM 90
              FR E+   YKA+R                                       ++P+ 
Sbjct: 89  RPAFRVELVESYKAHRVADVLDPAAVPPSVPVSAAATPGPAGTTEGVAAGAVAVEEVPDE 148

Query: 91  LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI----------AEKEG-------- 132
           L PQLP++     AFGI  +E  GFEADD+I T              A+  G        
Sbjct: 149 LTPQLPVIDAVLDAFGICRVEAAGFEADDVIGTLATRFPHGDAAGWAAQDRGEAPAGGGP 208

Query: 133 --FAVTIISTDKDLMQLVSPTT---CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187
               V I++ D+DL QLV         Y   K   ID   V  ++G+P         L G
Sbjct: 209 FAGPVEILTGDRDLFQLVRDDVPVRVRYSVEKFAAIDEAAVSARYGVPGRAYGDFATLRG 268

Query: 188 DSIDNIPGIPGIGYKTAALLLQEY 211
           D  D +PG+ GIG KTAA LL  +
Sbjct: 269 DPSDGLPGVAGIGAKTAAALLTRF 292


>gi|308516943|emb|CBW47048.1| N4 DNA polymerase-like protein [Roseovarius sp. 217 phage 1]
          Length = 874

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 133/661 (20%), Positives = 238/661 (36%), Gaps = 118/661 (17%)

Query: 379 QWVQKLETIGS-ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
            W+ KL  +    +  I   ++  F +    I     +Q +  +F+V             
Sbjct: 169 DWLNKLIEMDCDLTCDIEGFSLKHFDAGVGTITFCW-NQHEGIAFEV------------- 214

Query: 438 DSTGKNTLTKEILSYLKKFFE---NEHFLKIGHNIKYDKLVL----------------HR 478
           D+T        I   LK FF          I HNI YD  VL                  
Sbjct: 215 DNTRTKEEDPVIRQALKTFFYRFRESGRKMIYHNICYDAYVLIYQLFMDHILDQEGLLEG 274

Query: 479 YGISMRGFEDIMLMSYVL-DSGRSSH-DIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             + +  FED  +++Y+  +S   +   + + AQ++      E +K       I  I   
Sbjct: 275 LDVMLENFEDTQIITYLATNSCAGNELGLKAQAQEFAGNYAVEEIK------DITLIDLD 328

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           ++ E+ + +      ++      +I +  L  YE   + ++D++ QM++TG+ ++ D + 
Sbjct: 329 KLLEYNLVDGLSTWYVYNKHYQTMITDLQLGTYENFKEWVVDII-QMQLTGLPVNMDKVV 387

Query: 597 QVSAEISKNLL-----------------SLEENIYDLSGEK------------------- 620
            +   ++                      LEE        K                   
Sbjct: 388 ALDKLLTAESEHNIWKMMQTKIVQGFQYQLEEEALAKKNAKLKTKTVTRKDLGLTKDLEV 447

Query: 621 -FNLSSPKQLGDILFTK--LKFPSGAKTKTGQWKTTAQDLEQI-----NCGDNPIIKNIL 672
            +N  S  QL  +L++K  L  P    T +G   T A  LE++     +      +K +L
Sbjct: 448 AYNPGSAPQLQRLLYSKEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKDFLKILL 507

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA--STMTGRLASLEPNLQNIPI----- 725
           E++  + I ST+  +            + F +     T++GRL+S  PNLQNIP      
Sbjct: 508 EYKASAIILSTFLPAFLKAHPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIPSSAGGP 567

Query: 726 -KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
            K+ L + I+  F +PP    +  D+  +E RI A   K     +V+ +  D H + A  
Sbjct: 568 LKSRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYG 627

Query: 785 IFGVNIEKVSPQ--------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
            FG  +  + P               +R+ +K   F++ Y  +   L       + +A  
Sbjct: 628 YFGDQMPDIDPSSVESINSIGKKYKPLRQESKAPTFALTYQGTYHTLMQNCGFSKEKAQM 687

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD----EINSPKSSIR--NINE 884
              +Y   +    +Y+ +       +GY+   FG R+        I     + +      
Sbjct: 688 IENKYRQMYSVSIDYVNEKLEQATHDGYITVAFGLRVRTPLLVQTILGTNKTPKEAAAEG 747

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLED--HKLATKMLLQIHDELVFEVPEEEITTASQ 942
           R A NA  Q S   +  RA  +  K +    H+L  K    IHD   + V +    +   
Sbjct: 748 RTAGNAMGQ-SYCMLNSRAASAFMKKVRRSSHRLDIKPCAHIHDAQYYLVRDGAFDSLVY 806

Query: 943 I 943
           I
Sbjct: 807 I 807


>gi|326778493|ref|ZP_08237758.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
 gi|326658826|gb|EGE43672.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
          Length = 558

 Score =  184 bits (468), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 154/433 (35%), Gaps = 71/433 (16%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ +++   +           + L  L + +  
Sbjct: 157 MRLLTASESAGMLVAAEMHRDGLPWRADVHRELLTGLLGERYAGGGEPRRLAELADEVSA 216

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +   P             +    ++   D+P ++ ++ ++
Sbjct: 217 AFGRRVRPDLPADVVKA-FARAGIPVK-----------STRRWELEELDHPAVEPLIAYK 264

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I + +    L + + +   R    Y    T++GR  +       IP        IR
Sbjct: 265 KLYRIWTAHGWSWLQDWVREG--RFRPEYQPGGTVSGRWTTNGGGALQIPK------VIR 316

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           +A ++ P  +L+ AD  Q+E R+LA I++   L +V  +  D+++ ++   F  +     
Sbjct: 317 QAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHDGDLYKALSDRAFSGD----- 371

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R HAK      +YG +       L                RFP    Y++       
Sbjct: 372 ---REHAKLALLGAVYGQTSGDGLKNL-----------AALRRRFPLAVAYVDDAARAGE 417

Query: 855 QNGYVETIFGR------------------RIHYDEINSPKSSIRNINERAAINAPIQGSA 896
           +   V T  GR                          +P         R   N  +QGSA
Sbjct: 418 EGRVVRTWLGRTSPPAASAGQDEEAGLPQEDPEGSGGAPDGGPARARGRFTRNFVVQGSA 477

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CL 953
           AD     + ++ +++ +  L  +++   HDE++   P EE     + I  + E A     
Sbjct: 478 ADWALLMLAALRRTIFEQGLRAQLVFFQHDEVIVHCPAEESAAVVEAIRAAGELAGRTAF 537

Query: 954 PKINLRVPLKVNI 966
            +  +R P    +
Sbjct: 538 GRTPVRFPFTTAV 550


>gi|288918044|ref|ZP_06412402.1| 5'-3' exonuclease [Frankia sp. EUN1f]
 gi|288350562|gb|EFC84781.1| 5'-3' exonuclease [Frankia sp. EUN1f]
          Length = 341

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 102/243 (41%), Gaps = 39/243 (16%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L L D  S  +RAF+  P   R  DG+ VNA+ G  ++L + + + R   +   F   +
Sbjct: 12  RLLLADTPSLYFRAFHGVPRSVRAPDGMVVNAVRGLLDVLARQIVDLRPRRLVCCFDADW 71

Query: 66  DYPAVTFRNEIYPDYKANR--------------------------------PKIPEMLLP 93
                 FR  +   YKA+R                                 ++P+ L  
Sbjct: 72  ---RPAFRVALIASYKAHRVADPVPAPVAVSPVADAGGLGLGGPQAGGVVVEEVPDELEA 128

Query: 94  QLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE-KEGFAVTIISTDKDLMQLVSPTT 152
           QLP++     AFGI   E  GFEADD+IAT            V I++ D+DL QLV    
Sbjct: 129 QLPVIDAVLAAFGIARAEAAGFEADDVIATLATRHSVGRVGPVDILTGDRDLFQLVCDDV 188

Query: 153 ---CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                Y   K   +D   V  ++GIP         L GD  D +PG+ GIG KTAA LL 
Sbjct: 189 GVAVRYAVEKFALVDEASVSARYGIPGRAYADFAVLRGDPSDGLPGVAGIGAKTAAALLV 248

Query: 210 EYG 212
            +G
Sbjct: 249 RFG 251


>gi|148724470|ref|YP_001285436.1| DNA polymerase [Cyanophage Syn5]
 gi|145588115|gb|ABP87934.1| DNA polymerase [Synechococcus phage Syn5]
          Length = 583

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 214/637 (33%), Gaps = 110/637 (17%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F I TD +    S    I    LD  ++  F+       L +    D    + +    + 
Sbjct: 5   FDIETDGLLRGLSVIHCIVARDLDTNEEHRFEPHQTKAGLQLLKEADELWGHNIVGYDIE 64

Query: 452 YLKKFFENEHFLKIGHNIK-YDKLVLHRYGISMRGFEDIMLMSYVLD----------SGR 500
            +K+      + K     K YD L+L R       F D      +LD           G 
Sbjct: 65  AIKEL-----YPKWTTKAKLYDTLILSRL-----FFTD------LLDRDFRSKPANMPGN 108

Query: 501 --SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
               H + +   + L   + E     K           ++ E+  ++  V +Q+  +  P
Sbjct: 109 LYGRHSLEAWGHR-LGVHKSEF---GKQLDGDWSTYSPEMLEYCAQDVTVSVQVAQMFEP 164

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD--- 615
           KL            +  +  +++  E  G   D    +Q+ + +   L +L + +     
Sbjct: 165 KLE---QYADCIDTEHRLATIMAWQEREGFPFDVTAAQQLESRLRTELDALSDQMRSTFL 221

Query: 616 -LSG-----------------------EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            + G                       ++FN +S   +         +     T +G+ K
Sbjct: 222 FVDGGTFTPRRNNKPQGYIADAPMCKLKEFNPTSRHHIAWAFQQFRNWEPKEFTDSGKPK 281

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
                   +        K      +L K     A+     +   ++       + +T TG
Sbjct: 282 IDEP---TLTAIGTDEAKAFARILELQKHLGQLAEGKNAWLKLESKGRVHHSCVLNTNTG 338

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R A + PNL  +P  ++        F    ++  + AD S +ELR LAH          F
Sbjct: 339 RQAHMRPNLAQVPSASEYR----ALFGPGDSRVQVGADASGLELRCLAHY------LAPF 388

Query: 772 ENS--------LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
           +N          DIH  +A+ I+G +        R+  K + + +IYG    +L +    
Sbjct: 389 DNGSFAETVVNGDIHTELAS-IYGTD--------RKSGKGVTYCLIYGGGDHKLGSTAGA 439

Query: 824 PRSEA----ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
            +++A     +   R      G     +      R  G +  + GR I            
Sbjct: 440 SKAQASKKGKEIRGRIMRDLDGFAALSDAVSRRAR-TGVLRGLDGRPIRL---------- 488

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
                 AA+N  +Q + A I ++ ++  ++ L++  +    L  +HDEL   V   +   
Sbjct: 489 -QGKSHAALNYLLQSAGAVICKQWLLRSYELLDEANIDYWPLAFVHDELQISVAPSQAEM 547

Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           A+ +I  +M+      +  R  L    +  N+W + +
Sbjct: 548 ATLLITAAMKDV-QHNLKFRCELDSEAQTGNSWADCH 583


>gi|18640489|ref|NP_570330.1| DNA polymerase [Synechococcus phage P60]
 gi|18478719|gb|AAL73268.1| DNA polymerase [Synechococcus phage P60]
          Length = 587

 Score =  184 bits (467), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 115/641 (17%), Positives = 214/641 (33%), Gaps = 110/641 (17%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +F I TD +         I              +    ID       D TG     KE 
Sbjct: 3   LAFDIETDGLIP---DLTII------------HCIVARDIDTDEEFRFDGTGDYPSIKEG 47

Query: 450 LSYLKKFFENEHFLKIGHNI-KYDKLVLHRYGIS---MRGFEDIMLMSYV---------- 495
           L  L     ++     GHNI  YD   + +            D +++S +          
Sbjct: 48  LELL-----SKADELWGHNIVNYDYPAIQKLHPDWTPPSCTRDTLILSRLFFTDLLDRDF 102

Query: 496 -----LDSGR--SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
                L  G     H + +   + L + + E  KS +           ++ E+   +  V
Sbjct: 103 RSRPALMPGNLYGRHSLEAWGHR-LGHHKSEFGKSLEGDWS---TYSPEMLEYCARDVEV 158

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
            + L     PK+            +  +  ++S  E  G   D    + +  ++   L +
Sbjct: 159 SVALAKTFVPKIPE---YQWSVDTEHEIARIMSWQEQMGFPFDVRAAQALEGKLRLELDT 215

Query: 609 L----EENIYDLSG-----------------------EKFNLSSPKQLGDILFTKLKFPS 641
           L     E  + + G                        +FN +S   +         +  
Sbjct: 216 LSDDMRETFHFVDGGVMTPKRSNKVRHYFENAPFCKLREFNPTSRHHIAWAFEHHRGWEP 275

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
             +T  GQ K   + L +IN  ++     ILE ++     S   ++         +    
Sbjct: 276 KERTAGGQPKIDDEILREINTKESLAFARILELQKHLGQLSEGKNAWLKL---ERKGRLH 332

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
              + +T TGR A + PNL  +P   +        F        + +D S +ELR L H 
Sbjct: 333 HSCVLNTNTGRQAHMRPNLAQVPSAHEYR----SLFKPSDNHLQVGSDASGLELRCLGHY 388

Query: 762 AKITPLYQVFEN--SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
                  +  E   + DIH  +A EI+G +        R+  K + + +IYG    +L  
Sbjct: 389 LSRYDGGKFAEEVVNGDIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGL 439

Query: 820 QLRIPRSEA----ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
                +S A     +   +      G  +     +   + +G ++ + GR I        
Sbjct: 440 TAGASKSSASRKGQEIRGKIMQGLSGFADLNAAIQERAK-SGVLKGLDGRPIRL------ 492

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
                     AA+N  +Q + A I +  +I  H+ L++  +    L  +HDE    V  +
Sbjct: 493 -----QGKNHAALNYLLQSAGAIICKLWVIRTHELLQEAGIDYYPLAFVHDEQQLSVRAD 547

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +   A+Q+   +M+     ++  R  L    ++ N+W + +
Sbjct: 548 QAEMAAQLTTLAMKDV-EHQVKFRCALDSEYQIGNSWADCH 587


>gi|289674484|ref|ZP_06495374.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 141

 Score =  184 bits (467), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 64/144 (44%), Positives = 94/144 (65%), Gaps = 4/144 (2%)

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
            RYF R+PG+  Y+E+T+    + G+VETIFGRR++  +IN+   S+R   ER AINAP+
Sbjct: 2   DRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPM 61

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QG+AADI ++AM++V+  L++  L  +++LQ+HDELV EV E+ +   S+ I   M  A 
Sbjct: 62  QGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVSEQIRPHMSGAA 121

Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976
                L VPL V + V NNW E +
Sbjct: 122 ----QLAVPLLVEVGVGNNWDEAH 141


>gi|284032329|ref|YP_003382260.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
 gi|283811622|gb|ADB33461.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
          Length = 551

 Score =  184 bits (466), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 167/448 (37%), Gaps = 72/448 (16%)

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE--KLLHVYERLDKPMIDVVSQMEIT 586
           P ++ S  +++   +    ++      LR     E  + + +    +   + + ++M+  
Sbjct: 117 PGEQSSLFEIESEPLPFEALLRVYADQLRRHQQAEYPERMRLLTASESSGMLIAAEMDRA 176

Query: 587 GIQIDQDLLKQVSAEI----------SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           G+    +  + +  E+           + L  L E +    G +     P  +       
Sbjct: 177 GLPWSAETHRALLTELLGERYAGGGEPRRLTELAEQVSAAFGRRVRPDLPADVLKAF--- 233

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
                    K   ++ T+    ++   D+P ++ ++E+++L +I +    S  N      
Sbjct: 234 ---------KQAGYQLTSTRRWELQTIDHPAVEPLIEYKKLYRIYTANGWSWLNDWV-HD 283

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R    +    T++GR  +       IP        IRRA ++ P  +L+ AD SQ+E R
Sbjct: 284 GRFRPGFVPGGTVSGRWITNGGGGLQIPK------VIRRAVVADPGWRLVVADASQLEPR 337

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LA I++   L +V  N+ D+++ V+ + F  +        R  AK      IYG +   
Sbjct: 338 VLAAISRDPGLMEVAGNAADLYKAVSDKAFSGD--------RAMAKLAVLGAIYGQTSGD 389

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY------- 869
               L                RFP    Y++       +   V T  GR           
Sbjct: 390 GLKNL-----------AALRKRFPKAVAYVDDAARAGEEGRLVRTWLGRTCPPSGSQLDS 438

Query: 870 ----------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
                      +++S ++  R    R   N  +QGSAAD     M ++ +S+  +K   +
Sbjct: 439 AQLEGPPADEPQVDSRRARARG---RFTRNFVVQGSAADWALLMMAALRQSIATYK--AE 493

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHS 947
           ++   HDE++   P EE    +  I  +
Sbjct: 494 LVFFQHDEVIVHCPAEEADQVAAAIQAA 521


>gi|68073511|ref|XP_678670.1| 5'-3' exonuclease, N-terminal resolvase-like domain, [Plasmodium
           berghei strain ANKA]
 gi|56499210|emb|CAI04895.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium berghei]
          Length = 342

 Score =  184 bits (466), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 134/320 (41%), Gaps = 44/320 (13%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              ++DGSS +++ ++  P L  ++D + ++ I GF   L K+     K    S+ A++F
Sbjct: 21  TFLIIDGSSLLFKNYFGMPFLKNEND-INLSTIYGFTQSLNKIY----KLFSPSYIAIVF 75

Query: 66  DYPAVTFRN-EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D         EIY  YK  R K PE L  QL LV       GI  I  +  E+D+ IA+ 
Sbjct: 76  DSKTSNKEKREIYAQYKTLRKKNPEELYDQLKLVSEFCDIIGIKTIISENVESDNYIASL 135

Query: 125 TYIA---------------------------EKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                                          ++  F + I+S+DKDL+QL+      ++ 
Sbjct: 136 VDQIYNTIYTNNELAPNHYETGLISLNNDEIKENNFRIVIVSSDKDLLQLLEYNDNAHNN 195

Query: 158 ---------VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
                     K   ++    I++  I P +      L GD  D I GIP IG KT+  LL
Sbjct: 196 IDISVCQPNRKYRIVNAHTFIQEHNIYPNQYSDYLILAGDKTDGISGIPNIGDKTSKYLL 255

Query: 209 QEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
           +EY +++NIL N   +   K +   +   E   + RKL+ L+ +   +I L      +  
Sbjct: 256 KEYYSIDNILKNIHNL-PPKLQTIFINNIENINMFRKLIKLKCETNQSINLSEYKQVNIK 314

Query: 269 GPRL-ISFLKALEFTKLINR 287
              L  + +      KL+ +
Sbjct: 315 NFELFQNIVDKYSLHKLLKK 334


>gi|261212053|ref|ZP_05926339.1| probable exodeoxyribonuclease IX [Vibrio sp. RC341]
 gi|260838661|gb|EEX65312.1| probable exodeoxyribonuclease IX [Vibrio sp. RC341]
          Length = 225

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 12/227 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P           N IA       + LQ    E+  SH   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD---------ANDIARTAETTTRTLQRIINEAQPSHMIAVF 54

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D+  P   +R E+ P YKANR  +PE+L   L  ++ A    GI ++  +G EADD++AT
Sbjct: 55  DHHLPDRGWRAELLPTYKANRKPMPEVLQQGLETIQDAWWQLGIDSLLSEGDEADDLVAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                      VTIISTDK   QL+SPT  + D  ++  +D   + +++G+ P ++    
Sbjct: 115 LACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFITQEFGVTPAQLTDYW 174

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
            LTG S   IPG+ GIG K    +L ++ N+E   ++   + +K R+
Sbjct: 175 GLTGVSSSQIPGVAGIGPKATKEILNQFSNIEEAYLSP-ELAEKYRK 220


>gi|313892512|ref|ZP_07826101.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119091|gb|EFR42294.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 626

 Score =  183 bits (464), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 112/649 (17%), Positives = 222/649 (34%), Gaps = 90/649 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F I T+ +    ++   ++I      +  +++   I   +     + +         I+S
Sbjct: 4   FDIETNGLLDTTTQIHCMSILDTHNLEVQAYRPWEIKEGIQRLMHEINNDGTICGHNIIS 63

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           +     E + + K  H  K                 D ++M+ +L+S     D+    +K
Sbjct: 64  FDIPAIE-KLYPKEFHIQKEKHT----------HIIDTLVMARLLNSNIQEQDLIRYRKK 112

Query: 512 WL------SYTRKEI---LKSRKSSIPID-----KISDSQVQEHAIENSNVILQLWLLLR 557
            L      S++ K     L   K +   D     ++ +  + E+  ++  V   L+   +
Sbjct: 113 ELAGNLIGSHSLKAYGHRLGILKGTYAEDNEEAWEVYNEDMLEYNKQDVRVTYALYKSFQ 172

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            ++   +   +   L+     ++++ME  G   D     ++   + +    ++  I  + 
Sbjct: 173 DRIKGMEQAIL---LEHKAQWLMTKMEENGFPFDIPDALKLVKTLRQRAEEIDTQISAVV 229

Query: 618 ---------------------------GEKFNLSSPKQLGDILFTKLKFPSGA---KTKT 647
                                       + FN +S +Q+  I  T   +        T+ 
Sbjct: 230 PKIPDKVFTPKRDNKRLGYKKGVPIQRYKPFNPNSRQQIEWIFRTHYNYTPDKADLYTEE 289

Query: 648 GQWKTTAQDLEQINCGDN------PIIKNILEWRQLSKIKSTYADS---LPNHINKRTQR 698
           G+ K      E I   +        I     E   L K     AD       H+    + 
Sbjct: 290 GRLKIDESTFEYIEKDEKAPQGAKKIAPLFEERLMLCKRLGQLADGKQAWLKHVKSDGK- 348

Query: 699 VHTFYSLASTMTGRLASLEPNLQNI-PIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
           +H   +   T+TGR     PN+  +  + T  G++ R+ F  P        D   +ELR 
Sbjct: 349 IHGRVNPNGTVTGRATHSNPNVAQVPHVGTPYGEECRKLFNVPQGWTQAGIDACGLELRC 408

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           LAH          ++     H +V  +I   N +      R  AKT  ++ +YG     +
Sbjct: 409 LAHY------LSPYDKGKYAHEVVHGDIHTSNQKAAGLATRNLAKTFIYAFLYGAGDLMI 462

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT-KNFVRQNGYVETIFGRRIHYDEINSPK 876
              +     E     K++F   P I    E   K  ++   Y   I  +R +   ++  K
Sbjct: 463 GELVGGKEKEGKAIKKKFFKATPSIKLLKEDIEKALIKTRIYNRKIQWKRKYLRGLDGRK 522

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK------MLLQIHDELVF 930
             +R+I   +A+N  +Q + A I +  ++   + L              ++  +HDE  +
Sbjct: 523 LYVRSI--HSALNLLLQSAGALICKYWIVRTEERLTQRGYKHGWNGDFVLMAWVHDEGQY 580

Query: 931 EVPEEEITTASQIIVHSMEKACLP---KINLRVPLKVNIKVSNNWQEEN 976
               EEI      ++H  ++A          RV L    K   NW + +
Sbjct: 581 ACRTEEIADV---VIHEAQEAMRDTQKHFKFRVQLDTEGKKGKNWYDCH 626


>gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 551

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 129/277 (46%), Gaps = 28/277 (10%)

Query: 668 IKNILEWRQLSKIKSTYADSLP-NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I  + E   + K+ S +   L  + I+ +  R+H   ++ +T TGRL++  PNLQN P  
Sbjct: 276 IAALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPAL 334

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                KIR AF++ P   LI ADY Q+ELRILAH+     + + F+   D H   A  ++
Sbjct: 335 EKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMY 394

Query: 787 GVNIEKVSPQ--------------------------MRRHAKTINFSIIYGISPFRLATQ 820
               + V  +                           RR AK +NFSI YG +   L+  
Sbjct: 395 QHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWD 454

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
            ++   EA D +K ++     +  + +K K F  +   V T+ GR   +  +       +
Sbjct: 455 WKVSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQK 514

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
              ERAAINAP+QGSAAD+   AM+ + ++    +L 
Sbjct: 515 GHVERAAINAPVQGSAADVAMCAMLEIERNARLKELG 551



 Score = 45.8 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 22/138 (15%)

Query: 522 KSRKSSIPIDKISDSQVQE------HAIENSNVILQLWLLLRPKLIVEK----------L 565
            S   +I I+ +   Q ++      ++  +S   L+L+  L+ KL  ++          +
Sbjct: 14  GSEGKTISIEPVEKLQREDRELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTM 73

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK----- 620
              YE   +P   ++ +ME  G+ +D+  L ++            +     + +      
Sbjct: 74  YDFYEEYWRPFGALLVKMETEGVLVDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAK 133

Query: 621 -FNLSSPKQLGDILFTKL 637
             N++S  Q+  + F  +
Sbjct: 134 YMNVNSDNQIRQLFFGGI 151


>gi|296131039|ref|YP_003638289.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
 gi|296022854|gb|ADG76090.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Cellulomonas flavigena DSM 20109]
          Length = 393

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 138/332 (41%), Gaps = 28/332 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M K   L  VDG+S I+R+F+A      R  DG P  A+ G    L ++L    +   A 
Sbjct: 46  MTK--TLLAVDGNSLIHRSFHALAGSQLRTRDGRPTWAVKG---ALAQVLGAVDR-VGAD 99

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              V FD  A   R + +P YKA+R + P  L+ QL L      + G+  +   G EADD
Sbjct: 100 AVVVGFDDAAGNVRRDAHPHYKAHRAEKPGDLVTQLALAVDVFWSAGLHVVIPDGLEADD 159

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGI 174
           ++A+    A   G+   + ++D+D   LV  TT     +         +  E +    GI
Sbjct: 160 VLASAASAATAAGWHTVVCTSDRDAFALVDETTSALRIINGGVEASPVLTPERLRILTGI 219

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE--- 231
            P +     A+ GD+ DN+ GI G+G KTA  LL  +G+++    +       +  E   
Sbjct: 220 DPWQYRQYAAMRGDASDNLTGIRGVGPKTAVALLNAFGSVDAAFADVDTNGGARVAEVVG 279

Query: 232 -----NILEYAETARL--SRKLVMLRTDVPITIPLEHLI---LEDCNGPRLISFLKALEF 281
                 + +    AR   + +L+ +RTD+ + + L       L   +   L   L  +EF
Sbjct: 280 TACVRKLADPEGRARFWENVELMTMRTDLDLEMDLTAASGPGLLPVDPQALQDALADVEF 339

Query: 282 TK---LINRVATTYDCDAANIEPVVLDINTTE 310
                L  R+ T+    A             E
Sbjct: 340 GSLQMLAARLLTSTPVGAGGDARATPVAPWDE 371


>gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus]
          Length = 482

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 118/254 (46%), Gaps = 54/254 (21%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG--VN 789
           K R + ++ P    +SADYSQ+E+R++AH++    L +VF +  D+ R +AA + G    
Sbjct: 214 KPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGKK 273

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
            E ++ + RR  K + + ++YG S   L  QLR+ R EA    +     FP + E+++K 
Sbjct: 274 AEDITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTFPKLTEFLKKV 333

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K   ++ GYVET+ GRR +  +INS   + R+  ER A N   QGSAAD+ + A  +V  
Sbjct: 334 KEDCKECGYVETLLGRRRYLPQINSTDKAERSRAERQAANTTTQGSAADLLKLAATNVAA 393

Query: 910 SLED----------------------------------------------------HKLA 917
            LE                                                      + A
Sbjct: 394 RLERCEWMSRPAGKPICTPPPNAAAGGTSSSALASGTADATVPCRFPRDGGRSQLARRPA 453

Query: 918 TKMLLQIHDELVFE 931
            +++L IHDEL++E
Sbjct: 454 CRLVLSIHDELLYE 467


>gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 654

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/654 (16%), Positives = 219/654 (33%), Gaps = 129/654 (19%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
             I T     +    I+  +    + ++    + +           D     T+  +++ 
Sbjct: 6   IDIET-----YSPNDISFGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVVL 60

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLM-SYVLDS---------- 498
            LK+    +  +K  +N +++   L+R G    +  +   M+  +Y+             
Sbjct: 61  DLKR----DEVIKHAYNAQFEITCLNRAGYQTFVEQWRCTMIHGAYLGYPMGLAKLGKAL 116

Query: 499 GRSSHDIASIAQ----KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI---ENSNVILQ 551
           G +   +   A     ++ S   K   K+   +  + K    +   +     ++    ++
Sbjct: 117 GLTQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEME 176

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
            +  L           V E ++K    V  +M  TG+ ID+ L+        +N  +L E
Sbjct: 177 CYRRLSA-------FPVPEEVEKQW-QVDIRMNATGVGIDRQLVDGALTIDEENKKALLE 228

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
             Y+L+G   N +S  QL D L +         TK             +   D+   K +
Sbjct: 229 EAYELTGLS-NPNSRNQLLDWLNSNTNLELEKLTK-------DSVAAAMTDADDLAKKVL 280

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP------- 724
              ++L+K   +  + + +   +  +   T     +  TGR A     +QN+P       
Sbjct: 281 TIRKKLAKSSVSKYEMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNL 340

Query: 725 ---------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
                                +   L Q IR A I+     L  AD+S IE R++A ++ 
Sbjct: 341 DTARSLVKASNRVGLGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSG 400

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL---- 817
            T   +VF    DI+   A+ +FGV + K  V+  +R+  K    ++ Y      L    
Sbjct: 401 ETWRQKVFAEGGDIYCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMG 460

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------------------ 853
           A  + +   E  + +  +    P I ++    +                           
Sbjct: 461 ALDMGLTEEELPNIVGLWRQASPNIVKFWYTVEKAAVYTVTTGNPMTLDHGITFRLEVDP 520

Query: 854 ---RQNGYVETIFGRRIHY--DEINSPKSSIRNINERAAIN---------------APIQ 893
               +   +E   GR++ Y    I         ++ +  +N                  Q
Sbjct: 521 FYGYRYMTIELPSGRKLFYPDPHIKLNNFDKEAVHFKTQLNNAWVTESTYGGKLVENITQ 580

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
             A D     ++     L  + L    ++ IHDE V EVP++E      I+  +
Sbjct: 581 AVARDCLALTLMR----LSGNGLPA--IMHIHDEAVIEVPKDEADEYLDIVEKT 628


>gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 650

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/672 (17%), Positives = 219/672 (32%), Gaps = 125/672 (18%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + +  + T        K +  A    +            F D  V     + G     
Sbjct: 1   MDTLAIDVETYC--ELDIKKVG-AYKYCEHPSFQILLFAYAFNDEPVEVIDFAQG----- 52

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLD-SGRSS 502
           +E+   +K    N   LK   N  ++   L +Y   GI    ++  M+ S +L   G   
Sbjct: 53  EELPQKVKTALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPG--- 109

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ---LWLLLRP- 558
             +  + +       K+ +K  K+ I          + +     N+       W + +  
Sbjct: 110 -SLDMVGKVLRFEEDKQKMKEGKALIQYFCKPCKPTKSNGGRTRNLPEHAPEKWEIFKKY 168

Query: 559 -------KLIVEKLLHVY--ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
                  +  +   L+ Y     ++ + ++   +   G+  D +L+++     +     L
Sbjct: 169 NKQDVEVERAIRNKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRL 228

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
            +   +L+G   N +SP QL   +  ++     + TK             I    +  +K
Sbjct: 229 TKEATELTGLS-NPNSPTQLKRWIGERVGHEVKSLTKDSIPTL-------IKESKDEKVK 280

Query: 670 NILEWRQL-SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---- 724
            ILE RQL +K      +++     +  +         +  TGR A     +QN+P    
Sbjct: 281 KILELRQLMAKTSIKKYETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHL 340

Query: 725 ------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
                                   I   L Q IR AFI     + I AD+S IE R++A 
Sbjct: 341 PDLDDARNFIRTGQFDKVEFLYDSIPDTLSQLIRTAFIPKEGNRFIVADFSAIEARVIAW 400

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRLA 818
            A       VF N+ DI+   A+++F V +EK  ++  +R+  K    ++ YG S   L 
Sbjct: 401 YAGEQWRLDVFNNNGDIYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALM 460

Query: 819 ---TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI--- 872
               +  IP  E    +K +    P I ++        ++     T    +     I   
Sbjct: 461 SMDKKKNIPEDELPGLVKDWRDASPHITKFWWDVDKAAKKAIRERTTVVLQFGLKFIYDP 520

Query: 873 -------------------------------------NSPKSSIRNINERAAINAPIQGS 895
                                                 S + +         +   +Q +
Sbjct: 521 GVLFIQLPSGRKLAYIRPKIEPGPYDKPIITYEGLQQTSKQWTTLETYGPKIVENIVQAT 580

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE--ITTASQIIVHSMEKACL 953
           A D     M  V            +++ +HDEL+ +VP+ +  +     I    +E A  
Sbjct: 581 ARDCLGITMQRVEDK------GFHIVMHVHDELICDVPKGKGTVEEICDIFGEPIEWAPG 634

Query: 954 PKINLRVPLKVN 965
                  PLK +
Sbjct: 635 L------PLKAD 640


>gi|324999158|ref|ZP_08120270.1| 5'-3' exonuclease [Pseudonocardia sp. P1]
          Length = 303

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 126/308 (40%), Gaps = 39/308 (12%)

Query: 15  FIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN 74
             +RA++  P      DG PVNA+ GF +M+ +L+   R   + +   + +      FR 
Sbjct: 1   MYFRAYFGVPESITAPDGTPVNAVRGFTDMISRLVTEQRPSRLVACLDLDW---RPAFRV 57

Query: 75  EIYPDYKANR---------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              P YKA+R                ++P+ L PQ+P++     A GI      G EADD
Sbjct: 58  AALPSYKAHRVVAARAADEVPAGVPEEVPDTLGPQVPVIMEVLAAAGICTAGADGHEADD 117

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPT----------TCLYDTVKEEKIDIEHVI 169
           +I T       +   V  +S D+DLMQ+V                    K E +  + V 
Sbjct: 118 VIGTLADRETAD--PVLAVSGDRDLMQIVRDPGDGRPRVRLLYIGRGLNKAEDLGPDEVA 175

Query: 170 KKWGIPPEK----MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA---S 222
            K+ +P ++       +  L GD  D +PG+PG+G KTAA L+  +G+   +L       
Sbjct: 176 AKYDLPRDRAGAAYAEMAMLRGDPSDGLPGVPGVGAKTAATLVGRFGSWAELLAAVTDGD 235

Query: 223 RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH--LILEDCNGPRLISFLKALE 280
                  R  +    +   +   +V + TD P+ + ++   L  E  +  RL    +   
Sbjct: 236 PRLAAGPRAKMTAARDYLDVVEPVVRVVTDAPVRMSIDDTALPAEPVDPARLDELAERWG 295

Query: 281 FTKLINRV 288
               + R+
Sbjct: 296 LESSVARL 303


>gi|319949285|ref|ZP_08023365.1| 5'-3' exonuclease [Dietzia cinnamea P4]
 gi|319437075|gb|EFV92115.1| 5'-3' exonuclease [Dietzia cinnamea P4]
          Length = 309

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 126/279 (45%), Gaps = 29/279 (10%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
            +  L ++D +   +RAF++ P      DG P NA+ GFC+M+  L++    E   +   
Sbjct: 2   SQGSLMVLDSAGLWFRAFHSVPEKITGPDGAPANAVRGFCDMVAVLVE----EYSPTGLV 57

Query: 63  VIFDYP-AVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              D      +R E+ P YKA+R         P  L PQ+  +R    A G+     +  
Sbjct: 58  AALDRQWRPDWRVELLPSYKAHRVGDDGEEDAPASLGPQVGAIRDVLGAAGLTQAWAEDA 117

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKK 171
           EADD++A  +         V +++ D+DL QL S TT +        K      + V ++
Sbjct: 118 EADDVLAALS----ARDREVLVVTGDRDLFQLASATTTVVYVGAGMKKRLAYTPQVVAER 173

Query: 172 W----GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-- 225
           +    G           L GD+ D +PG+ GIG K+AA LL+EYG+L+ I+  A      
Sbjct: 174 FDLPAGDDARAYADYAVLVGDASDGLPGVAGIGAKSAATLLREYGDLDGIIAAAGDPGSA 233

Query: 226 -QKKRRENILEYAETARLSRKLVML---RTDVPITIPLE 260
              ++R+ I E A+    +R +V L     DV     ++
Sbjct: 234 MSARQRKAITEGADYLTAARGVVRLGGRAFDVRFDGDVD 272


>gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1]
 gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1576

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 135/649 (20%), Positives = 249/649 (38%), Gaps = 187/649 (28%)

Query: 512  WLSYTRKEILKSRKSSIPIDK-----ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
             L     +++ ++ + + ID+     I+  +   +A  ++    + + L     +     
Sbjct: 843  HLFKDLFDLVSTKNNIVKIDEFDYSYINFDEQSFYAAGDTYATYEAFKLDYMNFLKRDSK 902

Query: 567  HVYERLDKPMIDV------VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY------ 614
             + +    P++ +      +S ++  GI+I+ D  + +     ++L  L +NIY      
Sbjct: 903  SILKEYPIPLVLLNDILLPISVIQSQGIKIEPDDYEFMKINFKRSLEELLKNIYNHPDLK 962

Query: 615  -------DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT--GQWKTTAQDLEQINCGDN 665
                       EKFN+ S + L  + +  L+ P   KT T  G  +     +++I   D 
Sbjct: 963  PYIEEFEAKYKEKFNIQSAEHLTHMFYDYLQVPDKYKTFTDKGNIQMNESAIKKIKGIDI 1022

Query: 666  P---------------IIKNILEWRQLSKIKSTYADSL-PNHINKRTQRVHTFYSLASTM 709
                            + +  LE+R  SK+ S Y  S   N +      VH  Y    T+
Sbjct: 1023 EDESIQDKKKVEIAKYLAEKTLEYRTFSKLYSAYIQSYNKNDLIDTNYIVHPNYFTTGTV 1082

Query: 710  TGRLASLEPNLQNIPIKT-DLGQKIRRAFIS----------------PPTKKLISADYSQ 752
            TGR++S EPN QNIP        +++  F+S                P T  L+ ADYSQ
Sbjct: 1083 TGRMSSSEPNFQNIPKGDLPKEFQVKNIFVSRYLNSNKYFEDNDYKKPITGILLQADYSQ 1142

Query: 753  IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI--------EKVSPQ-------- 796
            +ELR+LA +++   L   F +  DIH   A  I G++          +++P+        
Sbjct: 1143 MELRVLAMVSQDENLKNAFISGEDIHLATAKSITGMDYLSKDVDENTEITPEVKNLITKY 1202

Query: 797  --------------------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                                      +R+ AKT+NF I+YG++   LA ++ +   EA  
Sbjct: 1203 KQYWGKEAENLTDKEILSKIAHDTEVIRKKAKTVNFGIVYGMTAAGLAERINVSLKEAEK 1262

Query: 831  YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY------------------DEI 872
            +I++Y +  PG+  YI   +   ++ GYVETI+ R+ +                   D++
Sbjct: 1263 FIEQYLNALPGVQNYIITKQTKAKEKGYVETIWNRKRNLLNAKVYLHDIEQIIKHYKDKL 1322

Query: 873  NSPKSSIRN-------------------INERAAINAPIQGSAADITRRAMISVHKS--- 910
             S  +   +                    + R +INAPIQG A+D T  ++I ++ +   
Sbjct: 1323 YSKNTPEEDKLFYNNIIYGLKQMYYVGTKSLRQSINAPIQGGASDFTFVSLICLNHAFLT 1382

Query: 911  LEDHKLATK-------------MLLQIHDELVFEVPEE----EITTASQIIVHSMEKACL 953
            L++  +                ++  +HD +V ++P       +    +++   ME    
Sbjct: 1383 LKELNIPVYNKETNQIEYIRPVLIGTVHDSIVIDIPVHTKHYIVHKVIKLVKTIMEDPLN 1442

Query: 954  PKIN-----------------------------LRVPLKVNIKVSNNWQ 973
              IN                             L+VPLK +++V   W 
Sbjct: 1443 YFINIFLPDVYKVAPDVNLTELKKELNSIRDLYLQVPLKSDVEVGYRWG 1491



 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 99/321 (30%), Gaps = 37/321 (11%)

Query: 273 ISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS 332
               +              +D    ++     +        I++ T I            
Sbjct: 371 YKLFEKYIKKSF-------FDARGKSLLVKFFNTEFMLFPTISLNTIIKNRNFETVFNVD 423

Query: 333 SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE--TIGSA 390
             +   S      T  K + E L K      +     +I N K + + + +L   +    
Sbjct: 424 LFNFLVSSGMLFNTDYKKYFENLDK-KYKNFDEKIIVRIRNLKQLSEHLSELTVFSEPFV 482

Query: 391 SFKIITDTM-----DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
           +  I T+ +     D   +     +I+ +D K          +    +    D       
Sbjct: 483 ALDIETNGLKGYSTDKHKNTITMFSITKVDPKTKQLKTYVIGYEHKDIMNQMDEKSFKLY 542

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR------YGISMRGFEDIMLMSYVL--D 497
              +   +  +  +E+ +KI HN  +D   +          I +  + D + + Y+   +
Sbjct: 543 KNNVRKLILNYLNSENIIKIFHNGTFDVSYIMNKLNISPNEIKVTRYFDTINILYLRMEE 602

Query: 498 SGRSSHDIASIA-----QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV---- 548
             +    + ++A      +   +   + + + K+ +       ++ +++ +  S +    
Sbjct: 603 KLKGWQKLDNLAMLRSKLRTYYFYMHDYVDTLKNKLSELNSLINKFRKYDLTESQISCFL 662

Query: 549 -----ILQLWLLLRPKLIVEK 564
                ++  + + R KL +E 
Sbjct: 663 NINKTLINYYYIYRTKLDIEN 683


>gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 645

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 130/667 (19%), Positives = 227/667 (34%), Gaps = 120/667 (17%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + S S  + T +            +    + +D    +    +D       D      + 
Sbjct: 1   MKSISIDVETFSSVPLAKA----GVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG--FEDIMLMSYVLDSGRSSH 503
           KEIL+ L     +E   K   N  ++++ L R+ GI ++   +   M+ +  L    S  
Sbjct: 57  KEILAALT----DETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLK 112

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ---LWLLLRP-- 558
           D+   A  WL   + E     K  I    +     + +     N+       W L     
Sbjct: 113 DVG--AVLWLDRQKLE---EGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYN 167

Query: 559 KLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           K  VE  + +  RL K  +         +  ++   GI +D   + Q      ++     
Sbjct: 168 KRDVETEMAIQARLKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCL 227

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           E   +L+  + N +SP QL D L  K      +  K+       +  + +      + + 
Sbjct: 228 ERAQNLTDLE-NPNSPLQLMDWLHGK-GLSVESLAKS-------EVTKMLKTATGDVREV 278

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP------ 724
           +   +QLSK       ++        +    F    +  TGR A     LQN+P      
Sbjct: 279 LELRQQLSKTSVKKYMAMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQ 338

Query: 725 ---IKT-------------------DLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
              ++T                    L Q IR +F+  P  + + ADY+ IE R+LA +A
Sbjct: 339 LKEVRTLVKDGDFELLDMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLA 398

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSIIYGISPFRL--- 817
               +  VF    DI+   A+ +F   +EK   +  +R+  K    S  YG S   L   
Sbjct: 399 GEQWVLDVFREHGDIYCETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAM 458

Query: 818 -ATQLRIPRSEAADYIKRYFHRFPGIHEYIEK----TKNFVRQNGYVETIFGRRIH---Y 869
            A +  +   E    +  +    P I ++        K  V++   VET   R ++    
Sbjct: 459 GAVESGMKEEELQPLVDLWRASNPHIVQFWWDVDRAVKTCVKRRVEVETHGIRCVYKSGV 518

Query: 870 DEINSPKSSIRNIN-ERAAIN------------------------------APIQGSAAD 898
             I  P          R   N                                 QG+A D
Sbjct: 519 LFIRLPSGRELAYAKPRIGENRFGGESVTYEGLGMTKKWERIETFGGKLVENITQGTARD 578

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           +     +   K L +      +++ +HDE+V EVP   +++  + I   M  A  P    
Sbjct: 579 LL----VFAMKQLRNRGFD--IVMHVHDEIVLEVPYG-VSSVEE-ICSIM--AENPPWAK 628

Query: 959 RVPLKVN 965
            +PLK +
Sbjct: 629 GLPLKAD 635


>gi|54020611|ref|YP_116106.1| DNA polymerase I [Mycoplasma hyopneumoniae 232]
 gi|72080909|ref|YP_287967.1| 5'-3' exonuclease [Mycoplasma hyopneumoniae 7448]
 gi|53987784|gb|AAV27985.1| DNA polymerase I [Mycoplasma hyopneumoniae 232]
 gi|71914033|gb|AAZ53944.1| 5'-3' exonuclease [Mycoplasma hyopneumoniae 7448]
          Length = 294

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 85/294 (28%), Positives = 142/294 (48%), Gaps = 15/294 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L+DG+   +++F+     +R     G    A+  F + ++KLL+  R ++       
Sbjct: 4   KILLIDGTWLTFKSFFGGFHGNRLINSKGEMTFAVHIFFSSVFKLLKLLRPDN----VYF 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+ A T R+++YPDYK  R K P+ L  Q+  ++           E Q FEADD+IA+
Sbjct: 60  AFDFGAKTPRHQMYPDYKKGRIKPPDSLFFQMDQIKKILSLANFLWSEHQDFEADDLIAS 119

Query: 124 YTYIAEKEGF--AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEK 178
                +K+     + I S D+DL+QLV   T +   +K   I+I   E+  + +G  P +
Sbjct: 120 LKKKIQKKDNEAEILIFSADQDLLQLVDKKTKVITKIKNNFININTQENFYESYGFSPSQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++  + L GD  DNI  I G+G KTA  LL++Y NL+NIL+N  +I Q K    I +  +
Sbjct: 180 VIDFKVLAGDVSDNIKVIEGLGKKTAIKLLEKYKNLDNILLNLDKINQ-KIANQINQKTK 238

Query: 239 TARLSRKLVMLRTDVPITIPL-EHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                +  + L         + + L ++    P L+  L  LE  K+   +   
Sbjct: 239 QLLFFKNFIKLNDKANFDFDIFQKLDIKI--SPLLVEILNELELKKVYENLTEL 290


>gi|282857717|ref|ZP_06266926.1| DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282584387|gb|EFB89746.1| DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 656

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 118/688 (17%), Positives = 223/688 (32%), Gaps = 138/688 (20%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F I TD +    +K   + I   +  +   +     +  + V   + +         +L+
Sbjct: 4   FDIETDGLLDATTKVHCLTIYDTETDESRLYSSRGDYPQIPVGVERLAAADCVCGHNVLA 63

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510
                F+     K+  +             + +G   D + +S ++ +  +  D   I +
Sbjct: 64  -----FDIPALTKVYPS------------FAPKGEVVDTLTISRLIWTNLADLDFTEIRR 106

Query: 511 -----KWLSYTRKEILKS----------RKSSIPIDKISD-SQVQEHAIENSNVILQLWL 554
                + + +  K+++ S                  + +D  +  E     +   + +  
Sbjct: 107 AKTPAQPMFFFPKKLVGSHSLKAWGYRLGVLKGEFGETTDWQEWSEEMCAYNRQDVVVTR 166

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            L  ++  +        L+     ++ Q E  G   +Q+      ++++K    L + + 
Sbjct: 167 ALWERIQEQDYSQTAIDLEHQFQKIILQQEQNGFPFNQEKAVLYYSQLAKRREELTQELQ 226

Query: 615 DLS----------------------GEK--------FNLSSPKQLGDILFTKLKFPSGAK 644
            +                       GE+        FN  S K + + L     +     
Sbjct: 227 RIFPPEDKGDWFVPKVNNAKRGYVKGERVWRARITAFNPGSRKDIAERLRETRGWEPQEY 286

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS---LPNHINKRTQRVHT 701
           T+ G  K   +    ++  D P  K + E+  + K     A+        +  R  R+H 
Sbjct: 287 TERGTPKVDEEV---LSALDWPEAKALSEYFLVQKRIGQLAEGNNAWLKLV-GRDGRIHG 342

Query: 702 FYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
                  +TGR   + PN+  +P +    G + R  F +PP   ++ AD S +ELR LAH
Sbjct: 343 HVITNGAVTGRCTHVSPNMAQVPAVGVPWGAEFRSLFYAPPGWSVLGADASGLELRCLAH 402

Query: 761 IAKITPLYQVFEN--SLDIHRMVAAEIFGV--NIEKVSPQMRRH-------AKTINFSII 809
                            DIH   A +  G+    EK  P+   H       AK   +++ 
Sbjct: 403 FMARYDGGAYARKILEGDIHWANA-QALGLVAEGEKKDPENPYHMWARNKVAKRFIYALN 461

Query: 810 YGISPFRLATQLRIPRSE---------------------------------------AAD 830
           YG    +L   + +   +                                        A+
Sbjct: 462 YGAGDHKLGELVELTDDQAKALLAAAPKSKIDQTSARLAKQFQYKTITFKDIAQSLKGAE 521

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
               +    P +   IE  K   ++ GY+  +  RR++   I+S            A N 
Sbjct: 522 LRATFMKNLPALASLIEDVKRVAKKRGYLIGLDKRRLNVRSIHS------------AFNT 569

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSM 948
            +Q + A   ++A   +   L    LA K   +  +HDE    V E E     QI   + 
Sbjct: 570 LLQSAGAIAVKKATCVLWDDLTTAGLADKVQQVAHVHDEYQLLVKEGEEEHVGQIATAAF 629

Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976
            KA L     R+PL    K   NW E +
Sbjct: 630 GKAGL-FFEFRIPLAGEFKFGRNWAETH 656


>gi|71893931|ref|YP_279377.1| putative 5'-3' exonuclease [Mycoplasma hyopneumoniae J]
 gi|71852058|gb|AAZ44666.1| putative 5'-3' exonuclease [Mycoplasma hyopneumoniae J]
          Length = 294

 Score =  181 bits (458), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 85/294 (28%), Positives = 142/294 (48%), Gaps = 15/294 (5%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L+DG+   +++F+     +R     G    A+  F + ++KLL+  R ++       
Sbjct: 4   KILLIDGTWLTFKSFFGGFHGNRLINSKGEMTFAVHIFFSSVFKLLKLLRPDN----VYF 59

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD+ A T R+++YPDYK  R K P+ L  Q+  ++           E Q FEADD+IA+
Sbjct: 60  AFDFGAKTPRHQMYPDYKKGRIKPPDSLFFQMDQIKKILSLANFLWSEHQDFEADDLIAS 119

Query: 124 YTYIAEKEGF--AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEK 178
                +K+     + I S D+DL+QLV   T +   +K   I+I   E+  + +G  P +
Sbjct: 120 LKKKIQKKDNEAEILIFSADQDLLQLVDKKTKVITKIKNNFININTQENFYESYGFSPSQ 179

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
           ++  + L GD  DNI  I G+G KTA  LL++Y NL+NIL+N  +I Q K    I +  +
Sbjct: 180 VIDFKVLAGDVSDNIKVIEGLGKKTAIKLLEKYKNLDNILLNLDKINQ-KIANQINQKIK 238

Query: 239 TARLSRKLVMLRTDVPITIPL-EHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                +  + L         + + L ++    P L+  L  LE  K+   +   
Sbjct: 239 QLLFFKNFIKLNDKANFDFDIFQKLDIKI--SPLLVKILNELELKKVYENLTEL 290


>gi|221053243|ref|XP_002257996.1| 5'-3' exonuclease, N-terminal resolvase,putative [Plasmodium
           knowlesi strain H]
 gi|193807828|emb|CAQ38533.1| 5'-3' exonuclease, N-terminal resolvase,putative [Plasmodium
           knowlesi strain H]
          Length = 447

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 131/316 (41%), Gaps = 42/316 (13%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              +VDGSS +++ F+  P L  + + + ++ I GF   L K+     K    S+  ++F
Sbjct: 129 TFLIVDGSSILFKNFFGMPYLKNESE-INLSTIYGFIQSLNKVY----KLFCPSYVVIVF 183

Query: 66  DYPAVTFRNEIYPDYKA---NRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           D    T  +E    Y      R K PE L  QL LV       GI  +     E+D+ IA
Sbjct: 184 DS--KTSNDEKKKIYAKYKIMRKKNPEELYEQLKLVNDFCDLIGIKTVSPTNVESDNYIA 241

Query: 123 TY------TYIA---------------EKEGFAVTIISTDKDLMQLVSPTTCLYDTV--- 158
                   T  A                ++ F V ++S+DKDL+QL+      ++ +   
Sbjct: 242 AIVDSISNTLKAGNISHYSSPNGGETTTQKEFRVIVVSSDKDLLQLLEYNDDAHNNMDIS 301

Query: 159 ------KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                 K   +D    I++  + P +      + GD  D I GIP IG KT+  LL+++ 
Sbjct: 302 ICQPNRKYRVVDASTFIQEHNLLPAQYSDYLIMAGDKTDGITGIPNIGDKTSKNLLKQFH 361

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC-NGPR 271
            ++NIL N   + Q K     L   E   + RKL+ L+ +   ++ L         +  R
Sbjct: 362 TIDNILKNLHNLPQ-KLHAIFLNNFENINIFRKLIKLKCETHQSLVLSEYRQGSIKDFER 420

Query: 272 LISFLKALEFTKLINR 287
             + L      KLI +
Sbjct: 421 FQNILDKYSLHKLIKK 436


>gi|302845441|ref|XP_002954259.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
 gi|300260464|gb|EFJ44683.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
          Length = 689

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 101/469 (21%), Positives = 169/469 (36%), Gaps = 92/469 (19%)

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           E+  V +Q W  LRP+           +++  +  +++QME  G+ +D   L + +A + 
Sbjct: 263 ESVRVRVQPW--LRPQ---------AVQVEMQVCWLLAQMEAVGMAVDTAGLGRQAAAVR 311

Query: 604 KNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ-----DL 657
           + + +L      L G +  NL S  QL  +L+ +L+ P             ++       
Sbjct: 312 QRMEALTSAASSLLGGRTINLGSSAQLAVVLYDELELPPPVPQGQRDAAGVSRTAVPGVT 371

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL---- 713
           E+        +       +L                 R  R+   +  A T    +    
Sbjct: 372 ERAKQVVGTRMDGTAAGAELDDGGGGGGGGGRRGPGGRWNRLRRGFQWAVTKYEVVVPLG 431

Query: 714 --------ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
                            +     L    R AF++PP + L++ADYSQIELR+LAH++   
Sbjct: 432 DTTEGSPCGGGGEEGAGVLRGDRLVVVARNAFVAPPGRLLVAADYSQIELRLLAHMSGDL 491

Query: 766 PLYQVFENSL-------------DIHRMVAAEIF--GVNIEKVSPQMRRHAKTINFSIIY 810
            L ++ +  +             D  R +AA     G     VS + R   K + + IIY
Sbjct: 492 RLQELLKRGVEQSEGRGGGGGGTDAFRHIAASWLRPGTAPADVSSRDREQVKRVVYGIIY 551

Query: 811 GISPFRLATQL---RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI-FGRR 866
           G++   LA QL    +   EA      +   F G+  +I  +    R++GY+ T   GRR
Sbjct: 552 GMTAQGLAQQLAEYGVGLEEATALRTSFLRHFAGVQAFITSSLYHARRHGYITTGLLGRR 611

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
                +NS    +        +N+ +Q                              IHD
Sbjct: 612 RPIAGVNSSDPRV--------VNSIVQ------------------------------IHD 633

Query: 927 ELVFEV--PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           ELVFEV    E +      +   M       ++L VPL V +     W 
Sbjct: 634 ELVFEVDSRPEVVRRLVVAVREIM----CGVVSLNVPLLVKVAAGPTWG 678


>gi|256375220|ref|YP_003098880.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
 gi|255919523|gb|ACU35034.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
          Length = 555

 Score =  179 bits (455), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/526 (17%), Positives = 192/526 (36%), Gaps = 78/526 (14%)

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSH----DIASIAQKWLSYT-RKEILKSRKSSIPI 530
           L   G  +    D+  +  +L +    H    D+A+   +        ++   +K   P+
Sbjct: 61  LLARGARVERCHDLRHVEQLLLAHLGRHREPRDLAAAVARLDGLPAPDDVAPRKKDDQPV 120

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL---LHVYERLDKPMIDVVSQMEITG 587
               +        +  + +L++      + +   L   L +    +       ++M   G
Sbjct: 121 LFEPERAPLPGGADPLDAVLRVHA--EQRRVAAGLPPSLRLLFAAESASALAGAEMTHFG 178

Query: 588 IQIDQDLLKQVSAEI----------SKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTK 636
           +   +D+ +++ A++           + L  L + I    G +  N  +P  +       
Sbjct: 179 LPWRRDVHEELLADLLGPRTAPGVRPRRLAELADRITAAFGGRAVNPDNPASIVRAF--- 235

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
                 A+         A  ++++   D+P  + +L +++L+++   +  S  +      
Sbjct: 236 ------AREGVDVPSARAWVIKEL---DHPAAEPLLAYKELARLWVAHGWSWLDAWVADG 286

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
            R    Y +   ++GR A+       IP        +R A  + P  +L++AD +Q+E R
Sbjct: 287 -RFRPDYVVGGVVSGRWATRGGAALQIPR------SLRTAVRADPGWRLVAADAAQLEPR 339

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           +LA +++   L +V     D++  +AA+ F  +        R  AK    S +YG +   
Sbjct: 340 VLAALSRDRRLAEV-AGEDDLYTTLAADSFHGD--------RGQAKIAMLSAMYGGTSGG 390

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE----- 871
                      AA+ +     RFP    Y+E+      + G V +  GR           
Sbjct: 391 -----------AAELLAVLRRRFPDAVGYVERAAREGERGGVVRSRLGRTSPAPSQAWHE 439

Query: 872 --------INSPKSSIRNI--NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
                    ++ + S R      R   N  +Q SAAD T   + ++ + L +      ++
Sbjct: 440 ATGSADDGEDALRRSQRAAREWGRFTRNFVVQASAADWTAALLGALRRRLHERAPEAHLV 499

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKV 964
              HDE++   P          +V + E+A        ++R PLK 
Sbjct: 500 FFQHDEVLVHCPAGLAEVVCAEVVAAGEEASRLVFEGTDVRFPLKA 545


>gi|150404361|gb|ABR68494.1| DNA polymerase I [Lactobacillus casei]
 gi|150404383|gb|ABR68505.1| DNA polymerase I [Lactobacillus casei]
 gi|150404403|gb|ABR68515.1| DNA polymerase I [Lactobacillus casei]
 gi|150404405|gb|ABR68516.1| DNA polymerase I [Lactobacillus casei]
 gi|150404411|gb|ABR68519.1| DNA polymerase I [Lactobacillus casei]
 gi|150404421|gb|ABR68524.1| DNA polymerase I [Lactobacillus casei]
 gi|150404425|gb|ABR68526.1| DNA polymerase I [Lactobacillus casei]
 gi|150404427|gb|ABR68527.1| DNA polymerase I [Lactobacillus casei]
 gi|150404431|gb|ABR68529.1| DNA polymerase I [Lactobacillus casei]
 gi|225349756|gb|ACN87803.1| PolA [Lactobacillus casei]
 gi|225349758|gb|ACN87804.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 11/241 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L  +K++ E+        + K + +  +R G+ +     D++L SY+++   +S+D+  I
Sbjct: 7   LPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKI 66

Query: 509 AQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           A+      L        K  K  +P D     Q        S+ +  L   L   L  ++
Sbjct: 67  AEDHDYHDLPRDEDIYGKGAKRQVPEDDKLFGQF----ARKSDALFALRPDLTGDLEKQE 122

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              ++  ++ P+  V+++MEI GI ++   LK +  E S+++  LEE IY  +G KFNL+
Sbjct: 123 QTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGLKFNLN 182

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF KL  P   KTKTG   +T+ D+       +PI+++IL++R  +K+ STY
Sbjct: 183 SPKQLGEILFEKLNLPVIKKTKTGY--STSVDVLNELKSASPIVQDILDYRGWAKLNSTY 240

Query: 685 A 685
            
Sbjct: 241 V 241


>gi|150404387|gb|ABR68507.1| DNA polymerase I [Lactobacillus casei]
 gi|150404391|gb|ABR68509.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|150404419|gb|ABR68523.1| DNA polymerase I [Lactobacillus casei]
 gi|150404429|gb|ABR68528.1| DNA polymerase I [Lactobacillus casei]
 gi|225349752|gb|ACN87801.1| PolA [Lactobacillus casei]
 gi|225349762|gb|ACN87806.1| PolA [Lactobacillus casei]
 gi|225349764|gb|ACN87807.1| PolA [Lactobacillus casei]
 gi|225349768|gb|ACN87809.1| PolA [Lactobacillus casei]
 gi|225349770|gb|ACN87810.1| PolA [Lactobacillus casei]
 gi|225349772|gb|ACN87811.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 11/241 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L  +K++ E+        + K + +  +R G+ +     D++L SY+++   +S+D+  I
Sbjct: 7   LPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKI 66

Query: 509 AQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           A+      L        K  K  +P D     Q        S+ +  L   L   L  ++
Sbjct: 67  AEDHDYHDLPRDEDIYGKGAKRQVPEDDKLFGQF----ARKSDALFALRPDLTGDLEKQE 122

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              ++  ++ P+  V+++MEI GI ++   LK +  E S+++  LEE IY  +G KFNL+
Sbjct: 123 QTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLN 182

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF KL  P   KTKTG   +T+ D+       +PI+++IL++R  +K+ STY
Sbjct: 183 SPKQLGEILFEKLNLPVIKKTKTGY--STSVDVLNELKSASPIVQDILDYRGWAKLNSTY 240

Query: 685 A 685
            
Sbjct: 241 V 241


>gi|147858394|emb|CAN81408.1| hypothetical protein VITISV_010447 [Vitis vinifera]
          Length = 734

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 59/268 (22%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
             + FR+ +YP YK+NRP  P+ ++  L  ++ + +A  I  IE+ G EADD+I T +  
Sbjct: 438 EGLNFRHTLYPSYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLSVR 497

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWG-IPPEKMVCL 182
           +   G+ V ++S DKD  Q++SP+  L        +     +E   K++G + P + V +
Sbjct: 498 SVDAGYKVRVVSPDKDFFQILSPSLRLLRIAPRGFEMTSFGMEDFAKRYGNLEPSQFVDV 557

Query: 183 QALTGDSIDNIP------------------------------------------------ 194
            +L GD  DNIP                                                
Sbjct: 558 ISLVGDKSDNIPGSFVLIMVKDPIENIPIEKLVSDIVVFFFLYCKSEQSDPRILRIVLLG 617

Query: 195 -GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
            G+ GIG   A  L+ ++G LEN+L    ++++++ R+ ++  A+ A LS+ L +LR D+
Sbjct: 618 NGVEGIGNVHAVQLITKFGTLENLLQCVDQVQEERIRKALISGADQAVLSKNLALLRCDL 677

Query: 254 P---ITIPLEHLILEDC--NGPRLISFL 276
           P   +    E LI      NG +  S L
Sbjct: 678 PFYMVPFTTEDLIFTKPEDNGEKFTSLL 705


>gi|300923223|ref|ZP_07139278.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 182-1]
 gi|300420532|gb|EFK03843.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 182-1]
          Length = 179

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +PE L  ++P +R A +  G+P     G EADD+ AT      + G   TI+STDK   Q
Sbjct: 1   MPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAGHQATIVSTDKGYCQ 60

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L+SPT  + D  ++  +D   + K++G+ P+++     L G S   +PG+ GIG K+A  
Sbjct: 61  LLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQ 120

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           LL E+ +LE I  N   + +K  R+ +  + E A L R +  L+TD+ I   L+ L L
Sbjct: 121 LLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 177


>gi|156093852|ref|XP_001612964.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Plasmodium
           vivax SaI-1]
 gi|148801838|gb|EDL43237.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium vivax]
          Length = 442

 Score =  178 bits (452), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 131/314 (41%), Gaps = 38/314 (12%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              +VDGSS +++ F+  P L  + + + ++ I GF   L KL     K    S+  ++F
Sbjct: 124 TFLIVDGSSILFKNFFGMPHLKNESE-INLSTIYGFIQSLNKLY----KLFCPSYVVIVF 178

Query: 66  DYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA-- 122
           D       + +IY  YK  R K PE L  QL LV       GI  +     E+D+ IA  
Sbjct: 179 DSKTSNDGKKKIYAKYKIMRKKNPEELYEQLKLVSDFCDLIGIKTVSSTDVESDNYIAGM 238

Query: 123 ------TYTYIA-------------EKEGFAVTIISTDKDLMQLVSPTTCLYDTV----- 158
                 T    +              K  F V ++S+DKDL+QL+      ++ +     
Sbjct: 239 VDSISNTLRERSSPEYFPPNGGETITKNHFRVIVVSSDKDLLQLLEYNDDAHNNMHIAIC 298

Query: 159 ----KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
               K   +D    +++  + P +      + GD  D I GIP IG KT+  LL+++ ++
Sbjct: 299 QPNRKYRLVDASTFVQEHNLLPAQYSDYLIMAGDKTDGIAGIPNIGDKTSKHLLKQFHSI 358

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLI 273
           +NIL N   +   K     L   E   + RKL+ L+     ++ L         +  +  
Sbjct: 359 DNILQNLHNL-PPKLHALFLNNVENINMFRKLIKLKCQTNHSLVLSQYRQGSIKDLEQFQ 417

Query: 274 SFLKALEFTKLINR 287
           + L      KLI +
Sbjct: 418 NVLDKYSLHKLIKK 431


>gi|300898139|ref|ZP_07116505.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 198-1]
 gi|301027532|ref|ZP_07190869.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 69-1]
 gi|300358197|gb|EFJ74067.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 198-1]
 gi|300395040|gb|EFJ78578.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 69-1]
          Length = 179

 Score =  178 bits (452), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +PE L  ++P +R A +  G+P     G EADD+ AT      + G   TI+STDK   Q
Sbjct: 1   MPEELHDEMPALRTAFEQRGVPCWSASGNEADDLAATLAVKVTQAGHQATIVSTDKGYCQ 60

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L+SPT  + D  ++  +D   + K++G+ P+++     L G S   +PG+ GIG K+A  
Sbjct: 61  LLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQ 120

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           LL E+ +LE I  N   + +K  R+ +  + E A L R +  L+TD+ I   L+ L L
Sbjct: 121 LLVEFQSLEGIYENLDAVAEKW-RKKLETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 177


>gi|116621877|ref|YP_824033.1| 5'-3' exonuclease [Candidatus Solibacter usitatus Ellin6076]
 gi|116225039|gb|ABJ83748.1| 5'-3' exonuclease [Candidatus Solibacter usitatus Ellin6076]
          Length = 281

 Score =  178 bits (452), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+DG+  ++R +YA P  +R   GL V A  G    +  ++Q     + A+H AV  D
Sbjct: 3   VHLIDGTYELFRHYYALP-SARDAHGLEVAAARGVLRSVLGMIQ-----AGATHVAVATD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
               +FRN ++P YK      P+ LL Q PL+     A G+    +  FEADD +A    
Sbjct: 57  QVIESFRNGLWPGYKTGDGIEPD-LLAQFPLLEEVLAAAGVVVWPMVEFEADDALAAGAS 115

Query: 127 IAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKEEK-IDIEHVIKKWGIPPEKMVCLQ 183
           +A ++     V I + DKDL Q V  T  +    +     D   ++ K+G+ PE +    
Sbjct: 116 VAARDPRVDQVIICTPDKDLGQSVRGTRVVQLNRRTRVTFDEAAIVAKFGVSPESIPDYL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-----QKKRRENILEYAE 238
           AL GD+ D  PG+PG G K++A +L ++ +LE+I ++    +            + E  E
Sbjct: 176 ALVGDAADGYPGLPGWGAKSSAAVLAKFRHLESIPLDWREWRVNASNAGALAHTLAEQRE 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDC 267
            A L R L  L TD+ +   ++ L     
Sbjct: 236 QAMLFRTLATLCTDIRLFEDVDELQWRGP 264


>gi|111223170|ref|YP_713964.1| putative 5'-3' exonuclease [Frankia alni ACN14a]
 gi|111150702|emb|CAJ62403.1| putative 5'-3' exonuclease [Frankia alni ACN14a]
          Length = 389

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 104/259 (40%), Gaps = 46/259 (17%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           L L D  S  +RAFY  P   R  DG PVNA+ G  ++L + +   R   + + F   + 
Sbjct: 23  LLLADAPSLYFRAFYGVPRSVRAPDGTPVNAVRGLLDVLARQIVEVRPRGLVACFDADW- 81

Query: 67  YPAVTFRNEIYPDYKANRPKIP-------------------------------------- 88
                FR  +   YKA+R  +P                                      
Sbjct: 82  --RPAFRVALLASYKAHRVAVPAGRAGVSAPGGAVVGDAAAGRVGAGGDGAAGGEVEEVA 139

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI--AEKEGFAVTIISTDKDLMQ 146
           + L  QLP++     AFGI      GFEADD+IAT          G  V I++ D+DL Q
Sbjct: 140 DELTVQLPIIDAVLDAFGIARAAAAGFEADDVIATLATRHGGGARGGGVDILTGDRDLFQ 199

Query: 147 LVSP---TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
           LV         Y   K   +D   V  ++ IP         L GD  D +PG+ GIG KT
Sbjct: 200 LVDDAAGVRVRYAVEKFAVVDEASVRARYDIPGRAYADFAVLRGDPSDGLPGVAGIGAKT 259

Query: 204 AALLLQEYGNLENILINAS 222
           AA LL  +G+L  IL    
Sbjct: 260 AAALLNRFGSLAAILAALD 278


>gi|150404373|gb|ABR68500.1| DNA polymerase I [Lactobacillus casei]
 gi|150404375|gb|ABR68501.1| DNA polymerase I [Lactobacillus casei]
 gi|150404377|gb|ABR68502.1| DNA polymerase I [Lactobacillus casei]
 gi|150404381|gb|ABR68504.1| DNA polymerase I [Lactobacillus casei]
 gi|150404417|gb|ABR68522.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  178 bits (451), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L  +K++ E+        + K + +  +R G+ +     D++L SY+++   +S+D+  I
Sbjct: 7   LPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKI 66

Query: 509 AQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           A+      L        K  K  +P D     Q        SN +  L   L   L  + 
Sbjct: 67  AEDHDYHDLPRDEDIYGKGAKRQVPEDDKLFGQF----ARKSNALFALRPDLTGDLEKQA 122

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              ++  ++ P+  V+++MEI GI ++   LK +  E S+++  LEE IY  +G KFNL+
Sbjct: 123 QTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLN 182

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF KL  P   KTKTG   +T+ D+       +PI+++IL++R  +K+ STY
Sbjct: 183 SPKQLGEILFEKLNLPVIKKTKTGY--STSVDVLNELKSASPIVQDILDYRGWAKLNSTY 240

Query: 685 A 685
            
Sbjct: 241 V 241


>gi|150404371|gb|ABR68499.1| DNA polymerase I [Lactobacillus casei]
 gi|150404379|gb|ABR68503.1| DNA polymerase I [Lactobacillus casei]
 gi|225349754|gb|ACN87802.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  178 bits (451), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L  +K++ E+        + K + +  +R G+ +     D++L SY+++   +S+D+  I
Sbjct: 7   LPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKI 66

Query: 509 AQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           A+      L        K  K  +P D     Q        S+ +  L   L   L  + 
Sbjct: 67  AEDHDYHDLPRDEDIYGKGAKRQVPEDDKLFGQF----ARKSDALFALRPDLTGDLEKQA 122

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              ++  ++ P+  V+++MEI GI ++   LK +  E S+++  LEE IY  +G KFNL+
Sbjct: 123 QTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLN 182

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF KL  P   KTKTG   +T+ D+       +PI+++IL++R  +K+ STY
Sbjct: 183 SPKQLGEILFEKLNLPVIKKTKTGY--STSVDVLNELKSASPIVQDILDYRGWAKLNSTY 240

Query: 685 A 685
            
Sbjct: 241 V 241


>gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 798

 Score =  178 bits (451), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 103/486 (21%), Positives = 189/486 (38%), Gaps = 59/486 (12%)

Query: 359 SQYPINNDSYTKIVN-TKDIQQWVQKLETI--GSASFKIITDTMD--AFHSKPIAIAIST 413
           +    +  SY  + + T+        L        +F      +      ++ I    S 
Sbjct: 254 AAIAPSEPSYRYVSDLTELTDPLEAMLAKNRTPVMAFDAEGTGLVWCKGSTRVILNQFSY 313

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
              +             L      +        + +   +K+F E+E   K+ HN+K+D 
Sbjct: 314 RPGESFM-----APTHPLYYEKVFNDPNPGAKAEALQGQVKRFLEDERVRKLAHNLKFDH 368

Query: 474 LVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK-------EILKSRK 525
            V  R GI +RG+  D  LM++  D    S  +    + W+             I KS+ 
Sbjct: 369 QVSAREGIEVRGWLHDTQLMAFFADENMMSKSLDDCTRVWVPEMAGYADNFNMAIDKSKM 428

Query: 526 SSIPIDKISDSQ-------VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMI 577
             +P D I D+        ++ +A  +++  L+L   L   L  + +    Y R+  P I
Sbjct: 429 MDVPPDDILDADGKVVQYGMRNYAGGDTDACLRLAQRLDKILREDPRQYQCYRRIQMPAI 488

Query: 578 DVVSQM-EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-----------GEKFNLSS 625
              +++ E  G+ +D++ L+ ++ ++++   +  + I  L            GE+ + + 
Sbjct: 489 IAFAKVVERYGLSVDKEHLRSLADQVAQYTDAKYDEIVRLIPPALRRDYLRRGEEISFTR 548

Query: 626 PKQLGDILFTK--LKFPSGAKTKTGQWKTTAQDLEQINCGDNP------------IIKNI 671
              + DILF K          TK+      AQ +  ++  D+              +   
Sbjct: 549 DVVMRDILFGKKGFGLTPKVFTKSTAKLPPAQRVPSVSTKDHMPYFEDAPGNAGRFVTGY 608

Query: 672 LEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           +++ +  K+ +TY  S         +I      ++  Y L +T+TGR AS  PN QN P 
Sbjct: 609 IDFLKQQKLITTYIGSEEKQSGFWQYIAPDGA-IYPSYKLHATVTGRSASDNPNGQNFPK 667

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +    +   + F + P  KL+SAD SQIELRI A +A    + +++    DIH    A  
Sbjct: 668 RGRFAKSYNKVFKARPGYKLVSADLSQIELRIAAWMANEPEMLRIYRADGDIHASTGAAT 727

Query: 786 FGVNIE 791
            G   E
Sbjct: 728 AGWTDE 733


>gi|150404365|gb|ABR68496.1| DNA polymerase I [Lactobacillus casei]
 gi|150404409|gb|ABR68518.1| DNA polymerase I [Lactobacillus casei]
 gi|150404423|gb|ABR68525.1| DNA polymerase I [Lactobacillus casei]
 gi|150404433|gb|ABR68530.1| DNA polymerase I [Lactobacillus casei]
 gi|150404437|gb|ABR68532.1| DNA polymerase I [Lactobacillus casei]
 gi|225349774|gb|ACN87812.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  178 bits (451), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L  +K++ E+        + K + +  +R G+ +     D++L SY+++   +S+D+  I
Sbjct: 7   LPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKI 66

Query: 509 AQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           A+      L        K  K  +P D     Q        SN +  L   L   L  + 
Sbjct: 67  AEDHDYHDLPRDEDIYGKGAKRQVPEDDKLFGQF----ARKSNALFALRPDLTGDLEKQA 122

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              ++  ++ P+  V+++MEI GI ++   LK +  E S+++  LEE IY  +G KFNL+
Sbjct: 123 QTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLN 182

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF KL  P   KTKTG   +T+ D+       +PI+++IL++R  +K+ STY
Sbjct: 183 SPKQLGEILFEKLNLPVIKKTKTGY--STSVDVLNELKSASPIVQDILDYRGWAKLNSTY 240

Query: 685 A 685
            
Sbjct: 241 V 241


>gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
 gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
          Length = 520

 Score =  178 bits (451), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 90/511 (17%), Positives = 174/511 (34%), Gaps = 78/511 (15%)

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSG 499
            G      ++++ ++   E EH   +  +       L R G+ ++   DI          
Sbjct: 30  LGDPVEYPDLIAAVRTIEEAEHPRWVWPSTATVYPPLLRAGVRVQRCHDI---------- 79

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH---AIENSNVILQLWLLL 556
                  S+ +  L           K S P D+  D ++       + +   +   +   
Sbjct: 80  -------SLTRAILGMRV------GKPSPPADEFDDDRLGLFDTAPVLDPLAVATEFAEQ 126

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE----------ISKNL 606
           R  +  +  L +    +       ++M  TG+       + +  E          +   +
Sbjct: 127 RATIGTDARLDLLIAAESAGALSAAEMTHTGLPFSTRKHRALLEERLGPRPTGYDLPARM 186

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILF-TKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
             L   I ++ G   N SS  ++ +      ++ PS  K               +   D+
Sbjct: 187 QELAAQISEVFGRTVNPSSSVEITEAFGRQGIELPSTRK-------------WFLQEIDH 233

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P +  +L  R+L+K+ ST      +    R  R    Y     ++GR AS       IP 
Sbjct: 234 PAVPLLLRHRELAKLYSTNGWQWMDSWV-RGDRFRPIYVPGGVVSGRWASRGGGALQIPK 292

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
                   R + ++ P    + AD  Q+E RILA ++    +        D++ +V AE 
Sbjct: 293 TM------RSSVVADPGHVFVVADAGQLEPRILAAMSGDRRMMAA-AGDDDLYALVGAEA 345

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FG +        R  AK     ++YG +             EA   +     RFP   EY
Sbjct: 346 FGGD--------RAKAKVAILGVLYGATA-----------GEAKALLVLLRKRFPVAVEY 386

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +E+      +   V+++ GR       +       +   R   N  +Q +A++     + 
Sbjct: 387 VEQAAKAGERGEVVKSLLGRACPPPSPDFYSHGDAHARGRFTRNFVVQATASEWALCLLA 446

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            + + L +     +++   HDE+V      E
Sbjct: 447 DLRRRLAE-DPDGELVFFQHDEVVVHTRNPE 476


>gi|115376896|ref|ZP_01464117.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115366075|gb|EAU65089.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 259

 Score =  178 bits (451), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 120/252 (47%), Gaps = 9/252 (3%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
            + L  LL +  K    +H AV FD P  +FRN ++  YK++   +P  L  Q  L   A
Sbjct: 1   MSSLLALLHD--KAEAVTHLAVAFDNPIRSFRNTLFAGYKSD-EGVPPELHAQFDLAEEA 57

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKE 160
            +A G+ A  ++  EADD +AT       +   V +++ DKDL Q V        D  +E
Sbjct: 58  VRALGVTAWSMKDHEADDALATAAARWAAQVEQVRLLTPDKDLGQCVRGRHVVQVDRRQE 117

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
           +++D E V  K G+PP  +  L AL GD  D IPG+ G G K AA LL  YG+LE I   
Sbjct: 118 KELDEEAVRAKLGVPPASVPDLLALVGDEADGIPGLTGFGEKGAATLLTAYGHLEAIPAE 177

Query: 221 ASRIK-----QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
           A+  K      ++    + E+ E A L R+L  L TD P+   L  L  +        + 
Sbjct: 178 AADWKVRPRGAERLAATLREHREEALLYRRLATLVTDAPLKESLAALAWKGVPRGPFEAL 237

Query: 276 LKALEFTKLINR 287
              L  T L +R
Sbjct: 238 CNRLGVTSLKSR 249


>gi|150404363|gb|ABR68495.1| DNA polymerase I [Lactobacillus casei]
 gi|150404397|gb|ABR68512.1| DNA polymerase I [Lactobacillus casei]
 gi|150404399|gb|ABR68513.1| DNA polymerase I [Lactobacillus casei]
 gi|150404401|gb|ABR68514.1| DNA polymerase I [Lactobacillus casei]
 gi|150404407|gb|ABR68517.1| DNA polymerase I [Lactobacillus casei]
 gi|150404413|gb|ABR68520.1| DNA polymerase I [Lactobacillus casei]
 gi|150404415|gb|ABR68521.1| DNA polymerase I [Lactobacillus casei]
 gi|150404439|gb|ABR68533.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L  +K++ E+        + K + +  +R G+ +     D++L SY+++   +S+D+  I
Sbjct: 7   LPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKI 66

Query: 509 AQKWLSYT----RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           A+    +          K  K  +P D     Q        SN +  L   L   L  + 
Sbjct: 67  AEDHDYHDMPRDEDIYGKGAKRQVPEDDKLFGQF----ARKSNALFALRPDLTGDLEKQA 122

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              ++  ++ P+  V+++MEI GI ++   LK +  E S+++  LEE IY  +G KFNL+
Sbjct: 123 QTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLN 182

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF KL  P   KTKTG   +T+ D+       +PI+++IL++R  +K+ STY
Sbjct: 183 SPKQLGEILFEKLNLPVIKKTKTGY--STSVDVLNELKSASPIVQDILDYRGWAKLNSTY 240

Query: 685 A 685
            
Sbjct: 241 V 241


>gi|150404389|gb|ABR68508.1| DNA polymerase I [Lactobacillus casei]
 gi|225349760|gb|ACN87805.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L  +K++ E+        + K + +  +R G+ +     D++L SY+++   +S+D+  I
Sbjct: 7   LPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKI 66

Query: 509 AQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           A+      L        K  K  +P D     Q        S+ +  L   L   L  + 
Sbjct: 67  AEDHDYHDLPRDEDIYGKGAKRQVPEDDKLFGQF----ARKSDALFALRPDLTGDLKKQA 122

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              ++  ++ P+  V+++MEI GI ++   LK +  E S+++  LEE IY  +G KFNL+
Sbjct: 123 QTDLFTDMEMPLSRVLAEMEIQGITLNAKALKAMGTEFSQSIKILEEKIYAEAGVKFNLN 182

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF KL  P   KTKTG   +T+ D+       +PI+++IL++R  +K+ STY
Sbjct: 183 SPKQLGEILFEKLNLPVIKKTKTGY--STSVDVLNELKSASPIVQDILDYRGWAKLNSTY 240

Query: 685 A 685
            
Sbjct: 241 V 241


>gi|109392407|ref|YP_654951.1| gp54 [Mycobacterium phage Cooper]
 gi|88910241|gb|ABD58171.1| gp54 [Mycobacterium phage Cooper]
          Length = 617

 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 121/639 (18%), Positives = 233/639 (36%), Gaps = 108/639 (16%)

Query: 378 QQWVQKLETIGSA-SFKIITDTMD-AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
           +Q+  +L    +  +F I T  +D  F    +  A    D    T               
Sbjct: 44  EQFCNRLPHRSTPIAFDIETPGLDNVFTINCVTAAWDWPDGGTQT--------------I 89

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI----SMRGFEDIML 491
             D        +  ++ L     +       HN+ +D   L+  G+    ++R   D +L
Sbjct: 90  LLDPARDEEHWEVAVALL-----HAARTVAFHNVPFDAPPLYHAGLINDSTIRRIVDTLL 144

Query: 492 MSYVLDSG-RSSHDIASIAQKWLSYTRKE--------ILKSRKSSIPID--KISDSQVQE 540
           ++           ++ +++ + L     +            +      +   I+    + 
Sbjct: 145 ITRFAVPDVMVPKNLTALSVRHLGLDDDKGGLERAFKAAGYKTQQAGFEGMDITSPVYRY 204

Query: 541 HAIENSNVILQLWLLLRPKL------------------IVEKLLHVYERLDKPMIDVVSQ 582
            A+ ++   L++  L+R K                     E+LL   E + +    V+ +
Sbjct: 205 GAMADTVATLRVEPLMRAKALHWATDHPFATYGATTQAEAEELLATQETVHR----VMLR 260

Query: 583 MEITGIQIDQDLLKQVSAE--ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
               G+ +D+  L + + +  I +NL   E   + L G         +L + L  + + P
Sbjct: 261 RSAVGLAVDRAYLDRYAEQVDIDRNLAIAELAAHGLEGGS---GKGAKLVEYLAERGELP 317

Query: 641 SG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699
           +   +T T + + T  D   ++  D+P+     +  Q+ K+   Y + +    +   +  
Sbjct: 318 ANWPRTPTRKLRATKAD---LDGLDHPLAAAQRKLAQIDKVMG-YLEKVDRQASVTGRCH 373

Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                L ++ TGR+A   P LQ  P          RA I+   + L S D+SQIE   +A
Sbjct: 374 PQVGVLGASATGRMAYGSPELQQFPAD-------ARAIITDDGQGLTSIDWSQIEPVTMA 426

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
            +AK       FE   D++           I++ +   R  AK +    +YG+   +LA 
Sbjct: 427 LMAKDHEFLAPFEAGEDLYE---------PIQRSAGIDRPVAKVVLLGTMYGLGIAKLAR 477

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
           Q+      AA   ++ F    G   ++ K +N     G V T  GR +  D         
Sbjct: 478 QIGHTEESAAQIRRQMFEAMKGCERWMRKVQNVAETYGRVVTAGGRILPVD--------- 528

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
               E  A+N  IQGSA D+   +++ + +      +   + L +HDELV +        
Sbjct: 529 -QGYEYKAVNYAIQGSAYDVLAHSIVEMDRR----GIGDHLQLAMHDELVVDT------E 577

Query: 940 ASQIIVHSMEKACLPKINL--RVP-LKVN-IKVSNNWQE 974
            ++ +   M       I    RVP L+ +   + + W +
Sbjct: 578 VAEEVQQIMLTPPEFLITWAERVPVLRTDRADMGSAWAK 616


>gi|150404367|gb|ABR68497.1| DNA polymerase I [Lactobacillus casei]
 gi|150404369|gb|ABR68498.1| DNA polymerase I [Lactobacillus casei]
 gi|150404385|gb|ABR68506.1| DNA polymerase I [Lactobacillus casei]
 gi|150404393|gb|ABR68510.1| DNA polymerase I [Lactobacillus casei]
 gi|150404395|gb|ABR68511.1| DNA polymerase I [Lactobacillus casei]
 gi|150404435|gb|ABR68531.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  177 bits (449), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L  +K++ E+        + K + +  +R G+ +     D++L SY+++   +S+D+  I
Sbjct: 7   LPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKI 66

Query: 509 AQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           A+      L        K  K  +P D     Q        SN +  L   L   L  + 
Sbjct: 67  AEDHDYHDLPRDEDIYDKGAKRQVPEDDKLFGQF----ARKSNALFALRPDLTGDLEKQA 122

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              ++  ++ P+  V+++MEI GI ++   LK +  E S+++  LEE IY  +G KFNL+
Sbjct: 123 QTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLN 182

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF KL  P   KTKTG   +T+ D+       +PI+++IL++R  +K+ STY
Sbjct: 183 SPKQLGEILFEKLNLPVIKKTKTGY--STSVDVLNELKSASPIVQDILDYRGWAKLNSTY 240

Query: 685 A 685
            
Sbjct: 241 V 241


>gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 516

 Score =  177 bits (448), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/520 (17%), Positives = 175/520 (33%), Gaps = 78/520 (15%)

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490
           L                ++++ ++   E EH   +  +       L R G+ ++   DI 
Sbjct: 21  LRTDPGGTPLADPVEYPDLIAAVRTIEEAEHPRWVWPSTATVYPPLLRAGVRVQRCHDI- 79

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH---AIENSN 547
                           S+ +  L           K S P ++  D ++       + +  
Sbjct: 80  ----------------SLTRAILGMRV------GKPSPPAEEFDDDRLGLFDTAPVLDPL 117

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE------ 601
            +   +   R  +  +  L +    +       ++M  TG+       +++  E      
Sbjct: 118 AVATEFADQRATIGTDARLDLLIAAESAGALSAAEMTHTGLPFSTQKHRELLEERLGPRP 177

Query: 602 ----ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF-TKLKFPSGAKTKTGQWKTTAQD 656
               +   +  L   I ++ G   N SS  ++ +      ++ PS  K            
Sbjct: 178 TGYDLPARMQELAAQISEVFGRTVNPSSSVEITEAFGRQGIELPSTRK------------ 225

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
              +   D+P +  +L  R+L+K+ ST      +    R  R    Y     ++GR AS 
Sbjct: 226 -WFLQEIDHPAVPLLLRHRELAKLYSTNGWQWMDSWV-RGDRFRPIYVPGGVVSGRWASR 283

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
                 IP         R + ++ P    + AD  Q+E RILA ++    +        D
Sbjct: 284 GGGALQIPKTM------RSSVVADPGHVFVVADAGQLEPRILAAMSGDRRMMAA-AGDDD 336

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           ++ +V AE FG +        R  AK     ++YG +             EA   +    
Sbjct: 337 LYALVGAEAFGGD--------RAKAKVAILGVLYGATA-----------GEAKALLILLR 377

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
            RFP   EY+E+      +   V+++ GR       +       +   R   N  +Q +A
Sbjct: 378 KRFPVAVEYVEQAAKAGERGEVVKSLLGRACPPPSPDFYSHGDAHARGRFTRNFVVQATA 437

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           ++     +  + + L +     +++   HDE+V      E
Sbjct: 438 SEWALCLLADLRRRLAE-DPDGELVFFQHDEVVVHTRNPE 476


>gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis]
          Length = 471

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 3/182 (1%)

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            RR AK +NFSI YG +   L+   ++   EA D + R++   P I ++ ++ +   +Q 
Sbjct: 289 ERRKAKVLNFSIAYGKTAHGLSKDWKVSLEEAKDTVDRWYADRPEIRKWQDEQRRQAQQR 348

Query: 857 GYVETIFGRRIHYDEIN-SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           GYV TI GRR    +   S   + ++   RAAIN PIQGSAADI   AM+ +++      
Sbjct: 349 GYVTTILGRRRQLPDAALSRNRAAQSHALRAAINTPIQGSAADIATAAMLRINEDEALQS 408

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA--CLPKINLRVPLKVNIKVSNNWQ 973
           +  ++LLQ+HDE++ E P E    A + +V  M      L    L V L V+ K ++ W 
Sbjct: 409 MGWRLLLQVHDEVILEGPRETAELARERVVACMRSPFTGLGPKPLLVDLVVDAKHADTWY 468

Query: 974 EE 975
           E 
Sbjct: 469 EA 470


>gi|161506484|ref|YP_001573596.1| hypothetical protein SARI_04690 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867831|gb|ABX24454.1| hypothetical protein SARI_04690 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 180

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 96/178 (53%), Gaps = 1/178 (0%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +P+ L  ++P +R A +  G+      G EADD+ AT      + G   TI+STDK   Q
Sbjct: 1   MPDNLHNEMPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQ 60

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L+SPT  + D  ++  +D   + K++G+ P ++     L G S   +PG+ GIG K+A  
Sbjct: 61  LLSPTLRIRDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQ 120

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           LL ++ NLE I  + + + +K  R+ +  + E A L R +  L+TD+ I   L+ L L
Sbjct: 121 LLTQFQNLEGIYAHLNEVPEKW-RKKLETHKEMAFLCRDIARLQTDLHIDGNLQQLRL 177


>gi|262155784|ref|ZP_06028907.1| DNA polymerase [Vibrio cholerae INDRE 91/1]
 gi|262030375|gb|EEY49016.1| DNA polymerase [Vibrio cholerae INDRE 91/1]
          Length = 684

 Score =  176 bits (445), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 118/719 (16%), Positives = 227/719 (31%), Gaps = 162/719 (22%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
                  + I TD +    ++   IAI  +D  ++  +    + +               
Sbjct: 1   MMQERLCYDIETDGLIEDVTRIHCIAIINVDTHEEALYADYLVMM------------TKG 48

Query: 445 LTKEILSYLKKFFENEHFLKIGHNI-KYDKLVLHRY-GISMRGF--EDIMLMS------- 493
             K+ L  L +       L +GHNI KYD  V+ +  G+ +      D ++ +       
Sbjct: 49  TIKDGLDRLMR-----AQLTLGHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNI 103

Query: 494 ----------YVLDSGRSSHDIASIAQKWLSYTRKEIL-----------------KSRKS 526
                     Y L     SH + +   +     + E                    ++K 
Sbjct: 104 QDIDQRNSGKYTLGKLFGSHSLEAWGVRLGGNLKMEYAPVIDPDQPVYDPTVKPKDAKKD 163

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                 I    + ++ +++  V + L+  L  K+          +L+     V++Q E  
Sbjct: 164 PRWKGSIFTPMMGDYCMQDVRVNVDLFHRLERKVAELNYARSL-KLEHDAAWVLAQQERN 222

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE--------------------------- 619
           G + D++   ++   ++     L   +    G                            
Sbjct: 223 GFKFDEEKAIKLLGRLAGRREFLYNELIRTFGGWWVSDGVVVPERTVNYKNPLTASRTQG 282

Query: 620 ---------KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
                     FN SS + +  +L  +  +     T +G+ K     L+ +     P  K 
Sbjct: 283 APFTKVKWVDFNPSSRRHIIKVLTDR-GWTPEEFTPSGEAKVDETILKDLKF---PEAKL 338

Query: 671 ILEWRQLSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI-K 726
           + EW  + K     AD      N ++     +    +    +TGR     PN+  +P   
Sbjct: 339 MAEWFLVQKRLGQLADGNQAWLNTVHPDGF-IRGSVNPNGAVTGRATHSFPNVAQVPSCG 397

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE--NSLDIHRM---- 780
            + G + R  F  P    L+ +D S +ELR LA+        +  +   + DIH      
Sbjct: 398 AEYGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDGGKYIDVVLNGDIHWANAQA 457

Query: 781 ---VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE---------- 827
              +A          +  + RR AKT  ++ +YG        Q+     E          
Sbjct: 458 AGFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAELTGQQVGWTEEEYLNWKAKGAH 517

Query: 828 ------------------------AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
                                     +  K +    P +   IE  K   + + Y+E I 
Sbjct: 518 KPIINRFKRQGKPWTREKVCNILKGEEVQKNFMKGLPALKNLIEICKEQHKTSKYIEGID 577

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK---- 919
           GRRI+              +E A++N  +QG+ A I +  ++ + K              
Sbjct: 578 GRRIYTR------------SEHASLNTLLQGAGALICKAWIVEIEKLAIQSGYRHGADGD 625

Query: 920 -M-LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            M    +HDE+      +EI     ++          + N    L  + ++  +W+E +
Sbjct: 626 FMYCAWVHDEVQIACRTKEIAEHIGLLCQVAMSHVEKEFNFICRLDADFQIGKSWKETH 684


>gi|156101137|ref|XP_001616262.1| DNA polymerase 1 [Plasmodium vivax SaI-1]
 gi|148805136|gb|EDL46535.1| DNA polymerase 1, putative [Plasmodium vivax]
          Length = 1221

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 87/360 (24%), Positives = 150/360 (41%), Gaps = 82/360 (22%)

Query: 669  KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
             N+  +R+  K+   Y ++LP  I K T ++H  ++     TGRL+  +PNLQNI  +  
Sbjct: 793  SNVKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQIGASTGRLSCEQPNLQNIHSRFR 852

Query: 729  L-----------------------------------GQKIRRAFISPP-----------T 742
                                                G  +  A   PP            
Sbjct: 853  CAVSLKGGEVGGEERGSGERGIANQCSANRGSVEVGGNNLTTAENPPPANFTCEGAPPDG 912

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            + LI+ DY Q+EL ++A+++    L ++ ++  D+    A  +F  N  +V+ ++RR  K
Sbjct: 913  ENLITFDYKQMELFVMAYLSFDVQLLKMLQSG-DVFVETAKVLF--NTTQVTSELRRMTK 969

Query: 803  TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            T+ + I+YG +   LA  L I    A++ I  +F  FP ++ +++  K  ++    V T+
Sbjct: 970  TVIYGILYGQTENGLAKSLLISEGMASNLISNFFQVFPNVYRFMQMQKILLKHMNRVYTL 1029

Query: 863  FGRRIHY-DEINSPKSSIRNINERAAINAPIQGSAADITRRA-----MISVHKSLEDHKL 916
             GR+      I +          R ++N PIQG AAD+ + A      I  H   +  +L
Sbjct: 1030 IGRKRVIEPTIKNK--------YRISMNTPIQGCAADVMKFALLSCFCIMTHGWPQSARL 1081

Query: 917  -------------------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
                               ATK++LQ+HDEL+FE          ++    +E A    I+
Sbjct: 1082 LKINNVSAAVLEENKPFLKATKLILQVHDELLFESTRRATDPIIRLFSPVLENAFYNLIH 1141



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 55/107 (51%), Gaps = 2/107 (1%)

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I++  +  + I  +  ++ L+  L         LL +Y  +++P+I  +S++E  GI +
Sbjct: 522 EITEEDMISYCISRNCCMMALFNFLMGIFAKNLNLLKIYLTIEQPLIICISEIERRGIFL 581

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           +Q  ++++    S  ++  ++ I  L     NL+S KQ+  +++  L
Sbjct: 582 NQKKIEEIHQSCSNPVV-YKQEIEQLCECNINLNSSKQVASLIYRHL 627


>gi|320010013|gb|ADW04863.1| DNA-directed DNA polymerase [Streptomyces flavogriseus ATCC 33331]
          Length = 568

 Score =  174 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 81/467 (17%), Positives = 163/467 (34%), Gaps = 90/467 (19%)

Query: 548 VILQLW-LLLRPKLIVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI-- 602
            +LQ++   LR     E    + +    +   + V ++M+ +G+    D+ + V  E+  
Sbjct: 136 ALLQVYAEQLRRHTAAEHPGRMALLTAAESAGMLVAAEMDASGLPWRADVHRAVLNELLG 195

Query: 603 --------SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
                    + L    + +    G +     P  +    F +     G           +
Sbjct: 196 ERYPGGGEPRRLAEAADEVSAAFGRRVRPDLPADVVKA-FAQAGIKVG-----------S 243

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRL 713
               ++   D+P ++ ++ +++L ++ + +    L + +  R  R    Y    T++GR 
Sbjct: 244 TRRWELEALDHPAVEPLIRYKKLYRVWTAHGWGWLQDWV--RDGRFRPGYQPGGTVSGRW 301

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
            +       IP        IRRA ++    +L+ AD  Q+E R+LA I++   L +V  +
Sbjct: 302 TTNGGGALQIPK------VIRRAVVADEGWRLVVADADQMEPRVLAAISRDRGLMEVAGH 355

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+++ ++   F  +        R HAK      +YG +       L            
Sbjct: 356 EGDLYKALSDRAFHGD--------RDHAKIALLGAVYGQTSGDGLKNL-----------A 396

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH------------------------- 868
               RFP    Y++       +   V T  GR                            
Sbjct: 397 ALRRRFPQAVAYVDDAAKAGEEGRLVRTWLGRTSPPAVGADEDGEAGIPQESEEPPSGEA 456

Query: 869 ------YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
                      S  +  R    R   N  +QGSAAD     + ++ ++L    +  +++ 
Sbjct: 457 TGTYGFTPGYASSNARARG---RFTRNFVVQGSAADWALLLLAALRRALAAGGMRAELVF 513

Query: 923 QIHDELVFEVPEEEITTASQIIVHSME---KACLPKINLRVPLKVNI 966
             HDE++   P EE +   + I  + E   +    +  +R P    +
Sbjct: 514 FQHDEVIVHCPAEEASAVVEAIREAGELAGRVAFGETPVRFPFTTAV 560


>gi|311112135|ref|YP_003983357.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
 gi|310943629|gb|ADP39923.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
          Length = 650

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 112/575 (19%), Positives = 199/575 (34%), Gaps = 85/575 (14%)

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLD------SGRSSHD-IASIAQKW 512
            H   I  + +    +L R G+ ++   D+ L+  +L       SG   +D +  +AQ  
Sbjct: 99  PHARWIWADTRTIAPILLRKGVRVQLCHDMRLVQRILRTASTHPSGHVRYDPVLDLAQDT 158

Query: 513 LSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNV-------ILQLWLLLRP-- 558
           +     ++     +  +      D ++ ++    +   +            +   L    
Sbjct: 159 VEKPAGKLPVARQIAGQGELFGDDFLTAAEENTVSGHEAAPPTLTSADTELVHQHLDEFT 218

Query: 559 -KLIV------EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI--------- 602
            +L         + L +    +     V +++E  GI  D         EI         
Sbjct: 219 AQLRAIATGAHPERLRLLAAAESAGSLVAAEIEYYGIPFDTAAHDAHLTEILGPRPPEGE 278

Query: 603 -SKNLLSLEENIY-DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
               L+ L E I  DL     N  SP++L   L       +   T++   K  A++    
Sbjct: 279 HPAKLMELAEQIRADLFAPHLNPDSPQELLRALHAAGV--NVPSTRSYVLKGWAEETATQ 336

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                 +I+ IL +++L +I +    S  +    R  R      +    TGR  +     
Sbjct: 337 RERRWALIEPILRYKKLYRIFTANGWSWADSWV-RNGRFRPHLEVGGAATGRWGASGGGA 395

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
             +P       +IR A ++P  +  + +D SQIE RILA ++    L        D++  
Sbjct: 396 LQLPA------EIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGR-GTDMYAG 448

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           +A       +E V+   R  AK    +I+YG     +   L                 FP
Sbjct: 449 IAELA---RLEGVALTERAQAKVGLLAIMYGGRSGEIGALLPHVAKL-----------FP 494

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRR--------------IHYDEINSPKSSIRNINERA 886
              E+ E+        G V T  GR                      S   S+     R 
Sbjct: 495 RAMEFTERAARIGEVGGQVTTFLGRTSPAPDERFKRTVADRSTPAAESRAVSLSRSYGRM 554

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDH-----KLATKMLLQIHDELVFEVPEEEITTAS 941
             N  +QG+AA+     M  V   L         + TK++  +HDEL+   P+ E     
Sbjct: 555 TRNFVVQGTAAEWALCWMGRVRSRLLTETVFGMPMRTKIVYFLHDELLLCGPKLEAERVE 614

Query: 942 QIIVHSMEKACLPKINLRVPLK--VNIKVSNNWQE 974
           +I+  S  +A        VP++  V++ V+ N+ E
Sbjct: 615 RILRESAAEAARLLFG-TVPVEFPVSVTVTTNYAE 648


>gi|225349766|gb|ACN87808.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASI 508
           L  +K++ E+        + K + +  +R G+ +     D++L SY+++   +S+D+  I
Sbjct: 7   LPAVKRWLEDAKRDLTVFDGKRNIVAANRLGVKLPDIAFDVLLASYLINPDENSNDLGKI 66

Query: 509 AQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           A+      L        K  K  +P D     Q        S+ +  L   L   L  ++
Sbjct: 67  AEDHDYHDLPRDEDIYGKGAKRQVPEDDKLFGQF----ARKSDALFALRPDLTGDLEKQE 122

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
              ++  ++  +  V+++MEI GI ++   LK +  E S+++  LEE IY  +G KFNL+
Sbjct: 123 QTDLFTDMEPTLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKFNLN 182

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           SPKQLG+ILF KL  P   KTKTG   +T+ D+       +PI+++IL++R  +K+ STY
Sbjct: 183 SPKQLGEILFEKLNLPVIKKTKTGY--STSVDVLNELKSASPIVQDILDYRGWAKLNSTY 240

Query: 685 A 685
            
Sbjct: 241 V 241


>gi|291301867|ref|YP_003513145.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
 gi|290571087|gb|ADD44052.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
          Length = 548

 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 91/462 (19%), Positives = 170/462 (36%), Gaps = 69/462 (14%)

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
            D   +  A    +V+ +++   R ++   E  + +    +     + ++M   G+    
Sbjct: 119 DDDSARPDARAELDVLAEVFADQRARMTADESSVRLLVAAESAGALIAAEMTHVGLPWRV 178

Query: 593 DLLKQVSAEI----------SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           D+   V A++           K L ++ + I       FN  SP+Q+             
Sbjct: 179 DIHDAVLADLVGPRPVKGMRPKKLQAIADQIAAAFDHPFNPDSPQQVLAAF--------- 229

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ----- 697
              K G    T +  E +   D+P +  +L +++LS++ S +  +  +            
Sbjct: 230 --RKAGHPIETTRAWE-LKTIDHPAVPPLLRYKELSRVHSAHGWNWLSEWVGDGPGGPDS 286

Query: 698 ---RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
              R    Y +   +TGR A+       IP        IR A  +    KL+ AD +Q+E
Sbjct: 287 PAKRFRPRYVVGGVVTGRWATDGGAALQIPK------VIRAAATADAGHKLVVADAAQLE 340

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            R+LA +++   +    E   D++  +A    G          R  AK    S +YG + 
Sbjct: 341 PRMLAAMSQDPGMIAAAEAD-DMYAALAPTFDG---------SRDDAKIALLSAMYGGTA 390

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
                 L + R            RFP  + Y+E+      + G V T  GR         
Sbjct: 391 GNATALLTVMR-----------RRFPTAYAYVEQAARDGEKGGLVRTWLGRTSPAPGDGW 439

Query: 875 PK-----SSIRNINERAAI--NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
                     R+  +R     N  +QG+AA+     M  +   L + +L   ++   HDE
Sbjct: 440 WNALTGPGGTRSARDRGRFTRNFVVQGTAAEWALSMMALLRSRLWERELGD-LVFFQHDE 498

Query: 928 LVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNI 966
           ++    +    T + +I    ++A      ++++RVPL   I
Sbjct: 499 IIVHCEQSRAETVAGLIQECADQATRLLFGRLSMRVPLSAAI 540


>gi|94969451|ref|YP_591499.1| 5'-3' exonuclease [Candidatus Koribacter versatilis Ellin345]
 gi|94551501|gb|ABF41425.1| 5'-3' exonuclease [Candidatus Koribacter versatilis Ellin345]
          Length = 300

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 133/289 (46%), Gaps = 16/289 (5%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           ++LVDG+  ++R +YA P  ++  DG  V A+ G    +  ++++      A+H AV  D
Sbjct: 3   VYLVDGTYELFRHYYALP-SAKDADGHEVAAVRGVLASVMGMIRD-----GATHIAVATD 56

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
           +   +FRN ++P YK +   +   LL Q  L+     A GI    +  FEADD +A    
Sbjct: 57  HVIESFRNNLWPGYKTS-EGVERDLLAQFHLLEEVLSAAGITVWPMIEFEADDALAAGAA 115

Query: 127 IAE--KEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
            A   K    V + + DKDL Q V        +      +D   V++K+G+ PE +    
Sbjct: 116 AAAANKRVKQVIVCTPDKDLAQCVAGTRVVQLNRRTNVPMDEAGVVQKFGVTPESIADYL 175

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEYAE 238
           AL GD+ D  PG+ G G K+++ +L ++ +LE+I  +A                + E  +
Sbjct: 176 ALVGDAADGYPGLKGWGAKSSSAVLAKFLHLESIPPDAREWGVHVAGASTLAATLSEQHK 235

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
            A L R L  LRTD+ +   +E L       P   +    L+  K   R
Sbjct: 236 QALLFRTLATLRTDIQLFDDVEQLRWSGP-KPEFEALAARLDAAKTERR 283


>gi|221057828|ref|XP_002261422.1| DNA polymerase I [Plasmodium knowlesi strain H]
 gi|194247427|emb|CAQ40827.1| DNA polymerase I, putative [Plasmodium knowlesi strain H]
          Length = 1245

 Score =  174 bits (440), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 148/372 (39%), Gaps = 91/372 (24%)

Query: 667  IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
            II N+  +R+  K+   Y ++LP  I K T ++H  ++     TGRL+   PNLQNI  +
Sbjct: 804  IINNVKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQVGASTGRLSCEHPNLQNIHSR 863

Query: 727  TDLGQKIR-------------------------------RAFISPPTKKLISADYSQIEL 755
                  ++                                       + LI+ DY Q+EL
Sbjct: 864  FRCAISLKGEDSSSVEVGKDKLTVAEDPDREILTCEMSPHESTPSDGENLITFDYKQMEL 923

Query: 756  RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
             ++A+++    L ++ ++  D+    A  +F  N  +V+ ++RR  KT+ + I+YG +  
Sbjct: 924  FVMAYLSFDRQLLKMLQSG-DVFVETAKVLF--NTTQVTSELRRMTKTVIYGILYGQTEN 980

Query: 816  RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
             LA  L I    A++ I  +F  FP ++ ++E  K  ++    V T+ GR+   +     
Sbjct: 981  GLARSLLISEGMASNLISNFFQVFPNVYRFMEMQKILLKHMNRVYTLVGRKRIIEP-TVK 1039

Query: 876  KSSIRNINERAAINAPIQGSAADITR---------------------------------- 901
                     R ++N PIQG AADI +                                  
Sbjct: 1040 NK------YRISMNTPIQGCAADIMKFALLSCLSIMTHGRGRQVVSNFGSVHEPHNKYDV 1093

Query: 902  ------------RAMISVHKSLEDHK----LATKMLLQIHDELVFEVPEEEITTASQIIV 945
                          + +V  +L +       ATK++LQ+HDEL+FE          ++I 
Sbjct: 1094 HSMGHWTQSARLLEINNVSAALLEENKPFLEATKLILQVHDELLFESTRRATAPIIRLIS 1153

Query: 946  HSMEKACLPKIN 957
              +E A    I+
Sbjct: 1154 PILENAFYNLIH 1165



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 57/107 (53%), Gaps = 2/107 (1%)

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +I++  +  + I  +  ++ L+  L         LL++Y R+++P+I  +S++E  GI +
Sbjct: 529 EITEEDMISYCISRNCCMMVLFDFLMDIFAKNLNLLNIYVRIEQPLILCISEIERRGIFL 588

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           ++  ++++    S  L+  +E I  L     NL+S KQ+  +++  L
Sbjct: 589 NKKKIEEIHQSCSNPLV-YKEEIEQLCECNINLNSSKQVASLIYGHL 634


>gi|66812036|ref|XP_640197.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
 gi|60468189|gb|EAL66199.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
          Length = 1459

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 130/253 (51%), Gaps = 27/253 (10%)

Query: 734  RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA---AEIFGVNI 790
            R +FIS     L+  DY+Q+ELRI+AH ++   L + FE+  D+  M+A   ++   +++
Sbjct: 1184 RNSFISREGFSLVVLDYNQVELRIIAHFSRDKHLIEYFESGSDVINMMAVRLSDRDDLDV 1243

Query: 791  EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
              V  + R   K I + I+YGI  F L   L IP  +A+D+IK ++ +F G+  +I+ TK
Sbjct: 1244 NNVDKETRDRVKRIVYGILYGIQAFSLGKLLNIPIYKASDHIKNFYFKFDGVSNFIQITK 1303

Query: 851  NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
            +   ++  V T+  R    D          +  +  A+N+ IQGS+ADI + AMI++   
Sbjct: 1304 SNAEKSHVVPTLGKRIRKLD----------SKFKTKAVNSIIQGSSADIIKLAMITIMNE 1353

Query: 911  LEDHKLAT---------KMLLQIHDELVFEVPEEEIT----TASQIIVHSMEKACLPKIN 957
            L    L           + LLQ+HDELVFEVP+E +         +I + ME       N
Sbjct: 1354 LFLPLLNLNSNNNNKIPRFLLQVHDELVFEVPDEYLGDNSIRMDLLIKYQMENV-SNYFN 1412

Query: 958  LRVPLKVNIKVSN 970
            + VPL  ++ +  
Sbjct: 1413 MCVPLSTSLSIGK 1425



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 137/347 (39%), Gaps = 71/347 (20%)

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG--ISMRGFEDIMLMSYVLDSG---RS 501
            +E L+++K   ++E  +K+ +  +       +Y   I++R   D M+ +++L+S      
Sbjct: 771  EEKLNFMKNIIQDESIVKVVYFCQESIKPFIKYYDWINLRNCWDPMIGAWLLESDLLSTK 830

Query: 502  SHDIASIAQ---------------------------------KWLSYTRKEI---LKSRK 525
               I S+A                                    L +T KE+   LK   
Sbjct: 831  KVSIESLAHFLKLKSLNNNNNNNNNNNNNNNNNNNNNNNQNNNNLIFTEKELNYILKRES 890

Query: 526  SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
                 DK + S    + + +  ++L+++ ++   L    L   +   +  +I ++S+ME+
Sbjct: 891  LLYDKDKDTSSNYNNY-LYDHWLVLKVYNVISISLFEFDLNFSFSN-EMRLIPILSKMEL 948

Query: 586  TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-----------EKFNLSSPKQLGDIL- 633
             GI  +   L      IS+    L+E++    G           E+F L S K++   L 
Sbjct: 949  EGICCNIGKLDHYLKRISEFTKELKESVNKDDGDDDDDNNFKRFEEFKLGSFKEVSGWLN 1008

Query: 634  FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD-SLPNHI 692
               +   S +K    Q K    + +++       I  +L +R+LS +K  Y +  L  + 
Sbjct: 1009 QHGVDIKSTSKETLIQQKRLNINNQKVVT----FIDRVLFYRRLSALKGHYIEPYLLKYT 1064

Query: 693  NKR-----------TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            N             T ++   ++   T TGRL+S EPNLQ IP  + 
Sbjct: 1065 NTTTTTKTRSNTNSTFQISCQWNQTGTATGRLSSSEPNLQTIPRTST 1111


>gi|295098758|emb|CBK87847.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Eubacterium cylindroides T2-87]
          Length = 170

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            L L+DG+S ++RA+YAT    R    +G+P NA+ GF  ML K +   + +S      V
Sbjct: 3   KLLLLDGNSMLFRAYYATLYTHRMSTSNGIPTNAVFGFIMMLNKAIDIIKPDS----ILV 58

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            +D    TFR++ +  YK  R  + E L+ Q P+VR    A GI   EI+G+EADDII +
Sbjct: 59  AWDAGKPTFRHKQFAAYKGTRKPLDEDLIVQFPIVREFLDATGIKRFEIEGYEADDIIGS 118

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW 172
                       TI+++D+DL+QL+  TT +    K     + +D+E+   K+
Sbjct: 119 MAK--TNSKGMTTILTSDRDLLQLIDDTTHVLLMKKGLSDMDLMDVENFKDKY 169


>gi|48697456|ref|YP_024841.1| Pas55 [Actinoplanes phage phiAsp2]
 gi|47679674|gb|AAT36803.1| Pas55 [Actinoplanes phage phiAsp2]
          Length = 1415

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 103/591 (17%), Positives = 218/591 (36%), Gaps = 98/591 (16%)

Query: 439  STGKNTLTKEILSYLKKFFENEHFLKIGHNIK-YDKLVLHR---------YGISMRG-FE 487
              G +T+ +++ + +++          GHNI  +D   L R         + ++  G   
Sbjct: 860  ELGGSTVAEDVAARIRQ-----GATITGHNIMAFDLPALVRAEAMTMDEIHDLADEGRLF 914

Query: 488  DIMLMSYVLDSGRSS---------HDIASIAQKW-LSYTRKEILKSRKS-------SIPI 530
            D +L + +LD   +          +D+ ++A  + L     ++ K            IP+
Sbjct: 915  DGLLAARLLDPPMARDKGVDATRKYDLGTLAVSYGLGEKYTDLSKPLAKKYGGDWGQIPV 974

Query: 531  D-KISDSQVQE-------HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
            D    D +  E       + ++++ +  +L   L  +L     +  Y   +  +  + +Q
Sbjct: 975  DTDDPDPERAEDARLFRTYMVQDAELSRRLHARLLEELG--GTVPEYLTREHRVAALAAQ 1032

Query: 583  MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG------------ 630
            +   G  +DQ LL +  AE+ +        + + +G    L++ K +             
Sbjct: 1033 IRHNGFLVDQPLLTERVAEVDQRKAESLAWLAEHAGVP--LANAKGVAYKSPLASTGGKE 1090

Query: 631  ---DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST--YA 685
                 L             +GQ+ T+ + ++ +    + + K     + + +I       
Sbjct: 1091 ALEAALRAAGATSFWRTPNSGQFDTSGEHMKHLAREYHHLPKVREIAKHVFRIVGARSVY 1150

Query: 686  DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
             +L ++++   +            TGR +   P L  +  +     +     +  P + L
Sbjct: 1151 QTLMDNMSPDGRVHP--KIGFDQATGRWSVTRPGLTVLGKRGGRHVERAVL-LPDPGEVL 1207

Query: 746  ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            +SAD SQ+++R +A +++     ++ +   D H  +A E+FG      +   R  AK I 
Sbjct: 1208 MSADLSQVDMRAVAGLSQDLAYIEMLKKD-DPHAEIAKELFG------TADRREEAKAIG 1260

Query: 806  FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
                YG     ++    I  +    +      RF  + E+  + +        ++  FGR
Sbjct: 1261 HGWNYGRGIKAISEGQEIEPALVRRFDASMRERFGRLVEWQTEVRAVAEAGQLLDNGFGR 1320

Query: 866  RIHYDEINSPKSSIRNINERAAINAPI---QGSAADITRRAMISVHKSLEDHKLATKMLL 922
                         +R   +RA    P    QG+A DI    ++ + + +        +  
Sbjct: 1321 ------------LMRADPQRAHTQGPALMGQGAARDIMMTGLLRLDRRILPM-----LRA 1363

Query: 923  QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI-KVSNNW 972
            QIHDE+VF VP  E     + +V     A   +    VP+  ++ K   +W
Sbjct: 1364 QIHDEIVFSVPVAEAEEVGRAVVE----ALSFEWR-GVPILADVSKTGTDW 1409


>gi|328464756|gb|EGF36076.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 147

 Score =  173 bits (438), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/149 (42%), Positives = 84/149 (56%), Gaps = 7/149 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  L L+DG+S  +RAFYA        +  DGL  NAI  F NML  LL    K+   +H
Sbjct: 3   DKKLLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTH 58

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
             V FD   VTFR ++Y +YK  R K PE LL Q+P ++      GI   E++ +EADDI
Sbjct: 59  VLVAFDAGKVTFRTKMYVEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDI 118

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS 149
           I T+    EK GF  TI++ D+DL QL S
Sbjct: 119 IGTFAAKGEKVGFTTTIVTGDRDLTQLAS 147


>gi|213421486|ref|ZP_03354552.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 123

 Score =  173 bits (438), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 5/123 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G+P + + G EADD+I T
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120

Query: 124 YTY 126
              
Sbjct: 121 LAR 123


>gi|326332395|ref|ZP_08198673.1| 5'-3' exonuclease, C- SAM fold protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325949803|gb|EGD41865.1| 5'-3' exonuclease, C- SAM fold protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 330

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 16/249 (6%)

Query: 1   MQKENH--LFLVDGSSFIYRAFYATPLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           M       L +VD  S ++R  +A          G P  A+ G    +   +     +  
Sbjct: 1   MSSAPRRLLLVVDAPSLLHRNHHARAHTRMVDRAGRPAWALHGMLRQILDSIDAFAPD-- 58

Query: 58  ASHFAVIF--DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
               AV+F  D    + R + YPDYKA R +   ML+ QL        A G+  +   G 
Sbjct: 59  ----AVLFGLDDRTASVRRDAYPDYKAGRAEKDPMLVEQLGRAGAMLDALGLATLTPPGL 114

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIK 170
           EADD+ A+    A + G+   +I++D+D   L+S  T +   +         ++   +  
Sbjct: 115 EADDVNASAAAWAVRNGWNCVVITSDRDAFALISEHTQVLRLINGGINGSPLLNPARLYS 174

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
            +G+P  + +   AL GD+ DN+PG+ GIG KTAA LL ++G ++ +  + S    +K  
Sbjct: 175 MYGVPATRYLEYAALRGDASDNLPGVSGIGEKTAAALLDQFGPMDGVWADISDNDGQKVT 234

Query: 231 ENILEYAET 239
           E +  +A  
Sbjct: 235 EVLDAWAAD 243


>gi|66821457|ref|XP_644204.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
 gi|60472150|gb|EAL70103.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
          Length = 519

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 29/261 (11%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE-IFGVNIEKVS 794
           +FIS     L++ DY+QIELRI+AH +K   L + FE+  D+  M+A+  I GV+   V 
Sbjct: 223 SFISREGYSLVALDYNQIELRIMAHYSKDKHLIEYFESGKDVINMMASRLIDGVDPNNVK 282

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            ++R   K I + I+YGI    L   L +   EA ++I  +  +F  +  +I+   N   
Sbjct: 283 KEIRDKVKRIVYGILYGIQKNSLHKLLGVSLDEAQEHINNFNLKFEEVSSFIK--INSQI 340

Query: 855 QNGYVETIFGRRIHYDE-----INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           +NG + TI  R   + +      ++  SS  + +   AIN+ +QGS+ADI + AMI++  
Sbjct: 341 KNGKILTIGNRIRRFQDHSSIIPSTSSSSSLSSSPIQAINSIMQGSSADIIKMAMINIMN 400

Query: 910 S--LEDHKLAT--------------KMLLQIHDELVFEVPE----EEITTASQIIVHSME 949
              L   KL                + +LQ+HDELVFE+P+    +E      +I + ME
Sbjct: 401 ELLLPLSKLREFIGVNSKGDVVGTPRFVLQVHDELVFEIPDQLLSDESIRLDLLIKYQME 460

Query: 950 KACLPKINLRVPLKVNIKVSN 970
           +      NL VPL  ++ +  
Sbjct: 461 RIG-NHFNLLVPLVTSLSIGK 480



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-----KFNLSSPKQLGDILFTKL 637
           MEI G+  D   L   S +I K +  +  ++Y+   +     K NL+SP+Q+ D      
Sbjct: 1   MEIEGVCCDTSKLDNCSEKILKRIKEINCSVYNEDSKLIREPKINLNSPQQVLDWF--GK 58

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI---LEWRQLSKIKSTYADSLPNH--I 692
              +   T + +     + ++ +NC +  ++  I      R+L+K+ S+Y   +      
Sbjct: 59  NLENYKITSSNKETLAIERVKFLNCNNKKVVDFIDSVSNVRKLTKLNSSYIKIILKSNRT 118

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           N    +    ++   T TGRL+S +PN Q++P  + 
Sbjct: 119 NNLKFQFSCLWNQTGTTTGRLSSTKPNFQSLPRNST 154


>gi|281416182|ref|YP_003347917.1| DNA polymerase [Vibrio phage N4]
 gi|237701489|gb|ACR16482.1| DNA polymerase [Vibrio phage N4]
          Length = 678

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 103/638 (16%), Positives = 194/638 (30%), Gaps = 140/638 (21%)

Query: 460 EHFLKIGHN-IKYDKLVLH---------RYGISMRGFEDIMLMSYVLDSG---------- 499
           E  + + HN IKYD   L             I  R   D ++MS +L S           
Sbjct: 54  EGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKRNVLDTLVMSRLLHSNLKDTDAGLLR 113

Query: 500 --------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
                     SH + +   + L   + +  +   + I  +      + ++  ++  V L+
Sbjct: 114 SGRITGKLYGSHSLKAWGMR-LGELKGDYGEQEAAWIEFN----EPMMDYCKQDVQVTLK 168

Query: 552 LWLLLRPKLI-----VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV-------S 599
           L+              + L      L+     ++++ E  G   D    +++        
Sbjct: 169 LFEKFMSDTWYFPNGADGLSESVL-LEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227

Query: 600 AEISKNLLSLEENIYDLSGEK--------------------------------------- 620
           AEI   L     + Y+  G                                         
Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287

Query: 621 --------------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
                         FN SS   +  +L      P+                  I     P
Sbjct: 288 YLKDAPFTPIQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLVP 347

Query: 667 I-----IKNILEWRQLSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                 ++ I E+  + K+    A+           +   +H   +    +TGR     P
Sbjct: 348 EEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRM--DKGGYIHGQVNPNGAVTGRATHSYP 405

Query: 719 NLQNIPI---------KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           NL  +P          ++  G +  R + +      +  D S +ELR L H         
Sbjct: 406 NLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVDASGLELRCLGHF------MA 459

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI----PR 825
            F++   I+ ++  +I   N        R +AKT  +  +YG    ++   +       +
Sbjct: 460 KFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEGK 519

Query: 826 SEAADYIKRYFHRFPGIHEYIEKT----KNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
              A+ IK++    P I    E+         +  G  + I  +R     ++  K  +R+
Sbjct: 520 KAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRKWIKGLDGRKVHVRS 579

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEE 935
               AA+N  +Q + A I ++ ++   K ++              +  +HDE       +
Sbjct: 580 --PHAALNTLLQSAGALICKKWIVEWDKGMQAAGYKHGWDGDYCFMAWVHDEAQLACRTQ 637

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           EI   +  I     +      N R PL    K+  NW 
Sbjct: 638 EIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIGANWA 675


>gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932]
 gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196]
 gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196]
          Length = 652

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 228/625 (36%), Gaps = 127/625 (20%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG--FEDIMLMSY 494
           D      L KE++  L     +   +K   N  +++  + ++  I+++   +   M+ + 
Sbjct: 48  DLVNDEELPKEVIEAL----NDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKAL 103

Query: 495 VLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI---L 550
            L   G     + S+++       K+ +K  K+ I          + +     N+    +
Sbjct: 104 TLGLPG----SLDSVSKALKFNEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDM 159

Query: 551 QLWLLLRP--------KLIVEKLLHVYERLDKPM-IDVV-SQMEITGIQIDQDLLKQVSA 600
           + W   +         +  +   L  Y+  ++ + +  +  ++  TGI++D +L++    
Sbjct: 160 EKWNKFKEYCKQDVVVEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIE 219

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              +    L +    ++G   N +SP QL   L  K+ F   + TK           E +
Sbjct: 220 CDKRYTEKLTKEAIKITGLN-NPNSPAQLKKWLSDKVGFEITSLTK-------ESIPEIL 271

Query: 661 NCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
              D+  +  ILE R+L   + IK   A  L    + R + +  FY   +  TGR A   
Sbjct: 272 KQVDDENVVRILELRKLMSKTSIKKYEAMKLAKGNDNRVRGLLQFY--GANRTGRWAGRL 329

Query: 718 PNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISAD 749
             +QN+P                            +   L Q IR AFI     + I +D
Sbjct: 330 VQVQNLPQNHIEDLDLARNLLKEGDFDLIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSD 389

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFS 807
           +S IE R++A +A       VF +   I+   A+++F + IE +    ++R+  K    S
Sbjct: 390 FSAIEARVIAWLAGEKWRLDVFNSHGKIYEASASQMFKIPIENIKKGSELRQKGKLAELS 449

Query: 808 IIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR--------- 854
             YG S   L    A ++ +   E    +  + +  P I ++        +         
Sbjct: 450 NGYGGSVGALISMGAIKMGLKEEELQPIVTAWRNANPNITKFWWDVDKAAKKAIKDRTIV 509

Query: 855 --QNG----------YVETIFGRRIHY--DEI------------------NSPKSSIRNI 882
             Q+G          ++E    RR+ Y   +I                   S +    + 
Sbjct: 510 EIQHGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDT 569

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--EEITTA 940
                +   +Q +A D  R AM +V  +         +++ +HDELV +V +    +   
Sbjct: 570 YGPKLVENIVQATARDCLREAMFNVTDA------GYSIVMHVHDELVIDVDKKGGSLEEV 623

Query: 941 SQIIVHSMEKACLPKINLRVPLKVN 965
           + I+   +  A         PLK +
Sbjct: 624 NSIMGKEISWAKGL------PLKAD 642


>gi|327197776|ref|YP_004301474.1| gp141 [Brochothrix phage A9]
 gi|299810376|gb|ADJ53175.1| gp141 [Brochothrix phage A9]
          Length = 334

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 131/276 (47%), Gaps = 18/276 (6%)

Query: 718 PNLQNIPIKTDLGQKIRRAFI---------SPPTKKLISADYSQIELRILAHIAKITPLY 768
            NLQN+P       +   AF          +     L+  DYS  E R+   +A    + 
Sbjct: 1   MNLQNLPRSISDPTRFDYAFPIKDYFGPNKARNHDTLVFTDYSAQEARLAGVLAGDEQMI 60

Query: 769 QVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
             F + S D+H   A+ +F V +E+V+  +R  AK + F ++YG  P   A +  +P  E
Sbjct: 61  NAFLDPSRDVHTETASLVFKVPVEEVTKDLRTRAKAVTFGLMYGEDPNSFAGKNNMPIEE 120

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI-FGRRIHYDEINSPKSSIRNINERA 886
           +    + Y+   P I E I+  ++   ++GY++    G R + +++ S     +N   R 
Sbjct: 121 SEQLFEDYYAGKPKIKELIDIAQSSATRDGYIDVPGSGFRRNLEDVWSADFKTKNGALRQ 180

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A+N  +QG +A +T++A+I++++    + +   +++ +HD +V     E + T + I+  
Sbjct: 181 ALNTMVQGGSAYLTQKALITINQYFRAYDIDAYIMVTVHDSIVCSTKRELVPTVATIMQV 240

Query: 947 SMEKACLPKIN-------LRVPLKVNIKVSNNWQEE 975
           +ME   +  +N       +R P+  ++ V   + +E
Sbjct: 241 AMENVEVDYLNIEHNGNPIRFPMVADVGVGVTYNKE 276


>gi|194100568|ref|YP_002003893.1| gp54 [Mycobacterium phage Nigel]
 gi|192758284|gb|ACF05057.1| gp54 [Mycobacterium phage Nigel]
          Length = 618

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 121/626 (19%), Positives = 230/626 (36%), Gaps = 104/626 (16%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
             +  I T  +D        I   T+  +  T+  V T+ +D S + +            
Sbjct: 56  LVAMDIETPGLD----NAFTINCVTMAWEMPTTGHVRTVILDPSRNRADH---------- 101

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI----SMRGFEDIMLMSYVLDSG-RSSH 503
             + ++   E+   L   HN  +D   L    +     +    D +L+S           
Sbjct: 102 --AIVRDMVEHAGRL-AFHNAPFDTPPLLHNQLFDRPDINKIVDTLLISRFAVPDVMVPK 158

Query: 504 DIASIAQKWLSYTRKE--------ILKSRKSSIPID--KISDSQVQEHAIENSNVILQLW 553
           ++ +++ + L     +            +  +   +   I+    +  A+ ++   L+L 
Sbjct: 159 NLTALSVRHLGLDDDKGGLERAFKAAGYKTQAAGFEGMDITSPVYRYGAMADTVATLRLE 218

Query: 554 LLLRPKL------------------IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
            L+R K                     E+LL   E + +    V+ +    G+ +D+  L
Sbjct: 219 PLMRAKALHWATDHPFQTYGATTEAEAEQLLWTQETVHR----VMLRRSAVGLAVDRAYL 274

Query: 596 KQVSAEIS--KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKT 652
            + + ++   +NL   E   + L G         +L + L+ + + P    +T T + + 
Sbjct: 275 DRYAEQVDVDRNLAVAELAAHGLEGGS---GKAAKLVEYLYQRGELPEPWPRTPTKKLRA 331

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T  DLE +   D+P+     +   + K+    A       +   +       L ++ TGR
Sbjct: 332 TKDDLEGL---DHPLAAAQRKLATIEKVMGYLAKV-DRQASVTGRCHPQVGVLGASATGR 387

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +A   P LQ  P          RA I+   + L S D+SQIE   +A +AK       FE
Sbjct: 388 MAYGSPELQQFPAD-------ARAIITDDGQGLTSIDWSQIEPVTMALMAKDHDFLAPFE 440

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D++           I++ +   R  AK +    +YG+   +LA Q+      AA   
Sbjct: 441 AGEDLYE---------PIQRSAGIDRPVAKVVLLGTMYGLGIAKLARQIGHTEESAAQIR 491

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           ++ F    G   ++ K +N     G V T  GR +  D             E  A+N  I
Sbjct: 492 RQMFEAMKGCERWMRKVQNVAETYGRVVTAGGRILPVDP----------GYEYKAVNYAI 541

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           QGSA D+   +++ + +      ++  + L +HDELV +         ++ +   M    
Sbjct: 542 QGSAYDVLANSIVEMDRR----GISDHLQLAMHDELVVDT------EVAEEVQQIMLTPP 591

Query: 953 LPKINL--RVP-LKVN-IKVSNNWQE 974
              I    RVP L+ +   + + W +
Sbjct: 592 EFLITWAERVPVLRTDRADMGSAWAK 617


>gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
 gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
          Length = 658

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 124/678 (18%), Positives = 230/678 (33%), Gaps = 135/678 (19%)

Query: 388 GSASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
            + S  + T  +MD   S     A    +  D         F D  V     + G+   +
Sbjct: 6   DTLSIDVETYSSMDIKTSG----AYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPS 61

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG---FEDIMLMSYVLDSGRSSH 503
               +       + + +K   N  +++  +     ++     +E  M+ +  L    SS 
Sbjct: 62  NVFYA-----LTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTL-GLPSSL 115

Query: 504 DIASIAQKW-------------LSYTRKE-----ILKSRKSSIPIDKISD-SQVQEHAIE 544
           D+   A K+             + Y  K          R  ++P   +      +E+   
Sbjct: 116 DMVGKALKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKR 175

Query: 545 NSNVILQLWLLL---RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           +  V  ++  LL     K+  +KL  + + +              GI  D  L+KQ    
Sbjct: 176 DVEVEREIRNLLNRYETKVEEQKLWQLDQHI-----------NDRGIGTDLILIKQAIEC 224

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +     L +   +L+G + N +SP Q+   +  +L     + TKT          E  +
Sbjct: 225 DTNYTERLTKAAIELTGLE-NPNSPTQIKKWIGERLGREVKSLTKTSIPGLIE---EATS 280

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              + +IK +   + ++K      D++ N   K  +         +  TGR A     +Q
Sbjct: 281 LNKSEVIKMLELRQLMAKTSIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQ 340

Query: 722 NIP----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQI 753
           N+P                            +   L Q IR AFI     + I +D+S I
Sbjct: 341 NLPQNHLPDLDNARNFVREGKFQEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAI 400

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSIIYG 811
           E R++A  A       VF     I+   A+++F V IE +    ++R+  K    ++ YG
Sbjct: 401 EARVIAWFAGEQWRLDVFSTHGKIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYG 460

Query: 812 ISPFRLA---TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----RQNGYV----- 859
            S   L+    +  IP  E    +K + +  P I ++            R+   V     
Sbjct: 461 GSVGALSSMDRKKSIPEEELPGLVKSWRNANPNITKFWWDVDKAAKKVIRERTTVNLQYG 520

Query: 860 ------------------------------ETIFGRRIHYDEINSPKSSIRNINERAA-- 887
                                         ET  G +I Y+ +       + I+      
Sbjct: 521 LKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFSGDKITYEGMEQTSKQWKRIDTYGPKL 580

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +   +Q ++ D  R AM  V K+         +++ +HDE+V ++P++      + I   
Sbjct: 581 VENIVQATSRDCLREAMFRVDKA------GYDIVMHVHDEVVLDIPKDRA--TVKEINEL 632

Query: 948 MEKACLPKINLRVPLKVN 965
           M +       L  PLK +
Sbjct: 633 MGQPIEWAPGL--PLKAD 648


>gi|320156437|ref|YP_004188816.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
 gi|319931749|gb|ADV86613.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
          Length = 684

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 120/720 (16%), Positives = 224/720 (31%), Gaps = 164/720 (22%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
                  + I TD +    ++   IAI  +D  ++  +    + +               
Sbjct: 1   MMQERLCYDIETDGLIEDVTRIHCIAIINVDTHEEALYADYLVMM------------TKG 48

Query: 445 LTKEILSYLKKFFENEHFLKIGHNI-KYDKLVLHRY-GISMRGF--EDIMLMS------- 493
             K+ L  L +       L +GHNI KYD  V+ +  G+ +      D ++ +       
Sbjct: 49  TIKDGLDRLMR-----AQLTLGHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNI 103

Query: 494 ----------YVLDSGRSSHDIASIAQKWLSYTRKEIL-----------------KSRKS 526
                     Y L     SH + +   +     + E                    ++K 
Sbjct: 104 KDIDQRNSGKYTLGKLFGSHSLEAWGIRLGGNLKMEYAPVIDPDQPVYDPTVKPKDAKKD 163

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
                 I    + ++ +++  V + L+  L  K           +L+     V++Q E  
Sbjct: 164 PRWKGSIFTPMMGDYCMQDVRVNVDLFHRLERKAAELNYARSL-KLEHDAAWVLAQQERN 222

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE--------------------------- 619
           G + D++   ++   ++     L   +    G                            
Sbjct: 223 GFKFDEEKAIKLLGRLAGRREFLYGELIRTFGGWWVSEGVVVPERTVNYKNPLTASRTQG 282

Query: 620 ---------KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
                     FN SS + +  +L  +  +     T +G+ K     L+ +     P  K 
Sbjct: 283 APFTKVKWVDFNPSSRRHIIKVLTDR-GWTPEEFTPSGEAKVDETILKDLKF---PEAKL 338

Query: 671 ILEWRQLSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI-K 726
           + EW  + K     AD      N ++     +    +    +TGR     PN+  +P   
Sbjct: 339 MAEWFLVQKRLGQLADGNQAWLNTVHPDGF-IRGSVNPNGAVTGRATHSFPNVAQVPSCG 397

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA---KITPLYQVFENSLDIHRM--- 780
            + G + R  F  P    L+ +D S +ELR LA+            V  N  DIH     
Sbjct: 398 AEYGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDDGKYIDVVLNG-DIHWANAQ 456

Query: 781 ----VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE--------- 827
               +A          +  + RR AKT  ++ +YG        Q+     E         
Sbjct: 457 AAGFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAELTGQQVGWTEEEYLNWKAKGA 516

Query: 828 -------------------------AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
                                      +  K +    P +   IE  K   + N Y+E I
Sbjct: 517 HKPIINRFKRQGKPWTREKVCNILKGEEVQKNFMKGLPALKNLIEICKEQHKTNKYIEGI 576

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK--- 919
            GRRI+              +E A++N  +QG+ A + +  ++ + K             
Sbjct: 577 DGRRIYTR------------SEHASLNTLLQGAGALVCKAWIVEIEKLAIQAGYKHGADG 624

Query: 920 --M-LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             M    +HDE+      +EI      +          + N    L  + ++  +W+E +
Sbjct: 625 DFMYCAWVHDEVQIACRTKEIAEHIGQLCQVAMSNVEKEFNFICRLDADFQIGKSWKETH 684


>gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26]
 gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55]
 gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34]
 gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79]
 gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291]
 gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58]
 gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291]
          Length = 652

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 118/625 (18%), Positives = 227/625 (36%), Gaps = 127/625 (20%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG--FEDIMLMSY 494
           D      L KE++  L     +   +K   N  +++  + ++  I+++   +   M+ + 
Sbjct: 48  DLVNDEELPKEVIEAL----NDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKAL 103

Query: 495 VLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI---L 550
            L   G     + S+++       K+ +K  K+ I          + +     N+    +
Sbjct: 104 TLGLPG----SLDSVSKALKFNEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDM 159

Query: 551 QLWLLLRP--------KLIVEKLLHVYERLDKPM-IDVV-SQMEITGIQIDQDLLKQVSA 600
           + W   +         +  +   L  Y+  ++ + +  +  ++  TGI++D +L++    
Sbjct: 160 EKWNKFKEYCKQDVVVEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIE 219

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              +    L +    ++G   N +SP QL   L  K+ F   + TK           E +
Sbjct: 220 CDKRYTEKLTKEAIKITGLN-NPNSPAQLKKWLSDKVGFEITSLTK-------ESIPEIL 271

Query: 661 NCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
              D+  +  ILE R+L   + IK   A  L    + R + +  FY   +  TGR A   
Sbjct: 272 KQVDDENVVRILELRKLMSKTSIKKYEAMKLAKGNDNRVRGLLQFY--GANRTGRWAGRL 329

Query: 718 PNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISAD 749
             +QN+P                            +   L Q IR AFI     + I +D
Sbjct: 330 VQVQNLPQNHIEDLDLARNLLKEGDFDLIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSD 389

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFS 807
           +S IE R++A  A       VF +   I+   A+ +F V IE +     +R+  K    +
Sbjct: 390 FSAIEARVIAWFAGEKWRLDVFNSHGKIYEASASHMFKVPIESIKKGDPLRQKGKISELA 449

Query: 808 IIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR--------- 854
           + YG S   L    A ++ +   E    +  + +  P I ++        +         
Sbjct: 450 LGYGGSIGALTSMGAIKMGLDEEELQPLVTTWRNANPNITKFWWDVDKAAKKAIKDRTIV 509

Query: 855 --QNG----------YVETIFGRRIHY--DEI------------------NSPKSSIRNI 882
             Q+G          ++E   GRR+ Y   +I                   S +    + 
Sbjct: 510 KLQHGIKFIYNPGVLFIELPSGRRLSYLRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDT 569

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--EEITTA 940
                +   +Q +A D  R AM +V  +         +++ +HDELV +V +    +   
Sbjct: 570 YGPKLVENIVQATARDCLREAMFNVTDA------GYSIVMHVHDELVIDVDKKGGSLEEV 623

Query: 941 SQIIVHSMEKACLPKINLRVPLKVN 965
           + I+   +  A         PLK +
Sbjct: 624 NSIMGKEISWAKGL------PLKAD 642


>gi|296270208|ref|YP_003652840.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
 gi|296092995|gb|ADG88947.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
          Length = 538

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 93/573 (16%), Positives = 192/573 (33%), Gaps = 81/573 (14%)

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485
                    T + +    T   ++ + +++         +  + +     L   G+ +  
Sbjct: 3   VAPEPDGGGTIRPAGQAATRVPDLAAAVRRLEAAGRPRWVWADTRRVYPRLLAAGVRVTR 62

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQ------KWLSYTRKEILKS----RKSSIPIDKISD 535
             DI L   +L +    +     A+      + L               +          
Sbjct: 63  CHDIALTEGLLLAAEGRYGQPRSARAAYARLRGLPVPEDADEPGEPAEGEQQALFTPRPP 122

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV---EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             +    +  ++++ +++     ++          +    +     + ++M   G+   Q
Sbjct: 123 DPIG---VAEADLVAEVFEDQWRRIARTPHPGRFRLLVAAESAGALIAAEMRHHGMPWRQ 179

Query: 593 DLLKQVSAEI----------SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPS 641
           D+   +  E+             L +L + I    G   N  SP+QL        +  PS
Sbjct: 180 DVHDALLTELLGPRPAPGMRPARLQALADEISAAFGHPVNPDSPQQLLKAFKAAGIDLPS 239

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
                             +   D+P +K +LE+++LS++ S Y  +       R  R H 
Sbjct: 240 TRS-------------HVLERVDHPAVKPLLEYKELSRLHSFYGWAWAAQWV-RGGRFHP 285

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            Y +   ++GR A+       IP        +RRA ++     L+ AD +Q+E R+LA +
Sbjct: 286 EYVVGGVVSGRWATSGGGALQIPK------VMRRAVVADQGWTLVVADAAQLEPRVLAAM 339

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           +    L +      D++  +A E FG          R  AK    S +YG          
Sbjct: 340 SGDAALARA-AGEADLYSALA-EAFGG--------SRESAKIAMLSAMYGG--------- 380

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH-----YDEINSPK 876
                +A   +     RFP  + ++E+      +   V +  GR        + E+ +  
Sbjct: 381 --TSGDAPRLLAVMRQRFPRAYAFVEEAARAGEEGRVVRSWLGRTCPPPSQRWRELTAGP 438

Query: 877 SSIRNINERAAI--NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
              R   ER     N  +Q +AA+     +  +   L D     +++   HDE++   P 
Sbjct: 439 DGGRVARERGRFTRNFVVQATAAEWALTLLAVLRGLLPD---PARLVFFQHDEVMVHCPL 495

Query: 935 EEITTASQIIVHSMEKAC---LPKINLRVPLKV 964
            +       +  +  +A      +  +R P+K 
Sbjct: 496 HQAERVRAAVERAAGEATRLLFGRTPVRFPMKA 528


>gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  172 bits (435), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 106/629 (16%), Positives = 202/629 (32%), Gaps = 134/629 (21%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL----VLHRYG---ISMRGFED-- 488
           D      L  E++  L     +    K   N  ++++     L R+    I+ R F D  
Sbjct: 48  DVASSEQLPAEVVEALV----DPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPA 103

Query: 489 ----IMLMS-YV------------LD-SGRSSHDIASIAQKWLSYTRKEIL-KSRKSSIP 529
                M+ S Y+            LD   R       +  ++ +  R  +L +    ++P
Sbjct: 104 QWRCTMVWSAYLGLPMSLEQVATVLDLPVRKDSAGKKLITRFCTPARPSVLNQGEMRNLP 163

Query: 530 I-DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             D     Q   +   +  V L +   L    + E     Y         +   +  TGI
Sbjct: 164 ASDPDGWEQFISYNRRDVEVELAIHDRLAGFPMPEAEWATY--------ALDQNINDTGI 215

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D+ L+        ++  +      +L+G + N +SP QL D L      P  + TK  
Sbjct: 216 RLDRVLVDHAVQCDRQHRATTLARAQELTGLE-NPNSPIQLKDWLTAH-GTPLQSLTK-- 271

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
                 +    ++     + + +    +L+K      +++ +   +  +         + 
Sbjct: 272 -----DEVAAALDTATGEVREVLQLRGELAKSSVKKYETMQHVAGRDGRGRGFLQFYGAG 326

Query: 709 MTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAFISP 740
            TGR A     +QN+P                            +   L Q IR AF+  
Sbjct: 327 RTGRFAGRLVQVQNLPRNYLPDLCEARDLVRTGEFEAVELLYDSVPDTLSQLIRTAFVPA 386

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMR 798
              + + AD+S IE R++A +A      Q F +  D++   A+ +FGV ++K   + ++R
Sbjct: 387 DGHRFVVADFSAIEARVIAWLAGEATTLQAFRDGKDLYCETASRMFGVPVDKHGANAELR 446

Query: 799 RHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           +  K    +  Y      L    A ++ +  SE    +  +    P + +          
Sbjct: 447 QKGKIAVLACGYQGGVGALKAMGALRMGLAESELQPLVDAWRAANPNVVQLWADINAAAI 506

Query: 855 QN--------------------GYVETIFGRRIHY------------------DEINSPK 876
           +                      +V    GRR+ Y                        K
Sbjct: 507 EAISTRQPTGVGALTFTVESGIMFVRLPSGRRLAYVKPKLGENRFGGTAITHEGIATGRK 566

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
                          +Q  A D+    M  V ++        ++++ +HDE+V E     
Sbjct: 567 WGQLETYGGKLTENIVQAVARDLLTFGMHQVDRA------GYRIVMHVHDEIVVETATAT 620

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +      I   M  A      L  PL  +
Sbjct: 621 VDE----ICELMATAPDWAAGL--PLAAD 643


>gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
 gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
          Length = 656

 Score =  172 bits (435), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 121/670 (18%), Positives = 209/670 (31%), Gaps = 147/670 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  I T +            +    +       +     D       D      + 
Sbjct: 1   MKHLSIDIETFS----DVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI--SMRGFEDIMLMSYVLDSGRSSHD 504
             ++S L     N   +K  +N  ++   L+RYG   S   +   ML           H 
Sbjct: 57  DSVISDL----NNPEVIKHAYNASFEITGLNRYGYATSPEQWRCTML-----------HG 101

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDS---QVQEHAIENSNVILQL--------- 552
           +      +L Y            IP DK   S    +  +         +          
Sbjct: 102 L------YLGYPAGLAFLGAALGIPEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPK 155

Query: 553 -----WLLLRPKLIVE--KLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQ 597
                W L +     +    +  Y RL    +         +  ++   GIQ+D DL++ 
Sbjct: 156 HDIDKWHLFKEYNAQDVVTEMEDYRRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRG 215

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
             A   ++   L E    ++G   N +S  QL   +           TK           
Sbjct: 216 ALAIDDQHKTELVEKAIQITGLT-NPNSRNQLLTWINDNSDLKLEKLTK-------ETVA 267

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +   ++ + + +   R L+K   +  +S+ N +    +         +  TGR A   
Sbjct: 268 ESLQIAEDQVAEVLHIRRALAKSSISKYESMKNAVCADGRIRGVLQFYGANRTGRWAGRL 327

Query: 718 PNLQNI----------------------------PIKTDLGQKIRRAFISPPTKKLISAD 749
             +QN+                             I T L   IR AF++P    L  +D
Sbjct: 328 VQVQNLPHDVPVAMDTAIRLVKNGNARGVKLMYGHISTSLSHLIRAAFVAPEGSLLCVSD 387

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFS 807
           +S IE R+L+ +A       VF    DI+   A+ +FGV +EK  ++  +R+  K    +
Sbjct: 388 FSAIEARVLSWLADEKWRQDVFAKGGDIYCASASSMFGVPVEKHGINGHLRQKGKVAELA 447

Query: 808 IIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ-------- 855
           + Y   P  L    A +  +   E  D + R+    P I  +                  
Sbjct: 448 LGYQGGPPALITMGALKQGLTEDELPDIVHRWRGANPRICGFWYDVDGAALSVMSDARPV 507

Query: 856 ---------------NGY----VETIFGRRIHYD--EINSPKSSIRNINER--------- 885
                           GY    +    GR+++Y    IN  +     ++ R         
Sbjct: 508 GLPHGILISRECNLLYGYDYLTIRLPSGRKLYYPQPYINENQFGKPALHYRVQAGIKWSH 567

Query: 886 ------AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI-T 938
                   +    Q  A D    A+  + K+        K L+ IHDE+V EVP+++I  
Sbjct: 568 TSTYGGKLVENITQAIARDCLALAINRLVKA------GYKPLMHIHDEVVLEVPKDKIHE 621

Query: 939 TASQIIVHSM 948
                I   M
Sbjct: 622 DEIDRINQIM 631


>gi|325973199|ref|YP_004250263.1| 5'-3' exonuclease, DNA polymerase I like protein [Mycoplasma suis
           str. Illinois]
 gi|323651801|gb|ADX97883.1| 5'-3' exonuclease, DNA polymerase I like protein [Mycoplasma suis
           str. Illinois]
          Length = 259

 Score =  172 bits (435), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 7/236 (2%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
           F N+L   ++     +  SH  +IFD    +FR E+ P+YKANR  +P  LL  LP    
Sbjct: 20  FMNLLLLQVRKWTTLNNYSHGVMIFDIDRKSFRTELLPEYKANRDPMPPELLSWLPEAVS 79

Query: 101 ATQAFGIPAIEIQ-GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
           A    G+  +    G+EADD+  T +    +  F V I +TD+D  QLV     +Y   K
Sbjct: 80  AVSETGLKVVYAPKGYEADDLAGTISKSLSEYDFKVDIFTTDRDFFQLVDHLISVYRVGK 139

Query: 160 EEKIDIEHVIK----KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
             +I++ + +       G+ P ++  L+AL+GD+ DN  GIP IG KTA  L+Q++   E
Sbjct: 140 SFQIEVNNHLNFSQLNEGLLPSQIPLLKALSGDASDNYSGIPKIGPKTATKLIQQFKT-E 198

Query: 216 NI-LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           NI L +   I+++K R++ILE  E  +L  K+  ++TD+     +   +L     P
Sbjct: 199 NIFLSSLEEIQEEKLRQSILENEEQIKLFLKISRIKTDLDYKFEISDFLLGKPTTP 254


>gi|301299356|ref|ZP_07205639.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853042|gb|EFK80643.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 253

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 96/165 (58%), Gaps = 4/165 (2%)

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQ 183
           AEK+ + V +++ D+DL QL +    +  TVK     E+    HV +K G+ PE++V ++
Sbjct: 1   AEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIGLIPEQIVDMK 60

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DN PG+  IG KTA  LL++YG L+ I  N   +K+ K +EN++   E A L 
Sbjct: 61  ALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENLIREKEIAYLC 120

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
           + L  +R D P+ I LE       +  +L++  + L+F K ++++
Sbjct: 121 QDLAEIRKDAPVEIDLEETEWTGKDIEKLVTLYQKLDFRKFLSQL 165


>gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2]
 gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2]
          Length = 625

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 101/625 (16%), Positives = 216/625 (34%), Gaps = 83/625 (13%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI---- 449
              D + A    P  + ++T  +      + +   +  +            L  +     
Sbjct: 20  TGEDALHAVADMPSGVDVATDIETPGLLRQFDINCVTAAWRHGDGRVHSVLLDPDRTPHH 79

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFE----DIMLMSYVLD-SGRSSH 503
              +++ +++   + I  N  +D   L   G I+         D +L + ++D S   + 
Sbjct: 80  DEAVREIYDSAEVI-ILQNGVFDLPALLHSGLITPEQIREKFLDTLLPARMIDTSSPMAR 138

Query: 504 DIASIAQKWLSYTRKEILKS----------RKSSIPIDKISDSQVQEHAIENSN--VILQ 551
            +  + ++ L    +E+             ++     + +            ++  + L 
Sbjct: 139 SLTMLVKRHLG--VEELTGGIELAFKAAGYKRQQDGYEGMDIDSPIYRLGAMADTVMTLA 196

Query: 552 LWLLLRPKLIVEKLLHVYER---LDKPMIDVVSQMEIT-----------GIQIDQDLLKQ 597
           LW +L    I ++L H ++    +D+     V +  IT           G+ +D+  L++
Sbjct: 197 LWPVLYEAAIDQQLDHPFQSRGCVDRAEAQYVVERMITELRIVGTRVAKGVNVDRGALER 256

Query: 598 V--SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS-GAKTKTGQWKTTA 654
              S E  +   +       L G K   S   ++ + L +    P+   +T +G+ K T 
Sbjct: 257 YADSVEDDRRRATATLAAVGLEGGKGKES---KIIEYLASVGHLPADWPRTPSGKLKATK 313

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             +E +        + +    QL+     Y + +        +         +  TGR++
Sbjct: 314 DLMEGLGDPIATAQRTLAHMDQLT----GYLEKVEAQSQVTGRCHPQISVAGAAATGRMS 369

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
              P LQ            R    +   +++ S D+SQIE   +A +A  +     F   
Sbjct: 370 ISSPPLQQFS------GPARAILTADEGQRMWSVDWSQIEPVTMALLAGDSEFLAPFAAG 423

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D++           I + +   R+ AK +    +YG    ++A  +      A    ++
Sbjct: 424 ADLYE---------PIMRAAGIERKVAKVLLLQTMYGSGAAKIAETIGHTPESAVQLRRQ 474

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
            F   P   +++ + +     +G + T   R +  D          +     A N   QG
Sbjct: 475 MFAAMPESSKFMSRVQTLGDTHGKIVTAGKRVLDVD----------SGFGYKATNYICQG 524

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE---EITTASQIIVHSMEKA 951
           +A DI    +I + +      L   ML  +HDE++   P E   E+    +I+   M   
Sbjct: 525 TALDILTETIIELDRR----GLGDSMLWWMHDEILVSGPPEVAREVQEVMEIVPDFMRTW 580

Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976
                 LR   +  +++   W E+ 
Sbjct: 581 PGHIDKLR--TECEVRIGAAWAEKG 603


>gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 649

 Score =  171 bits (434), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 120/655 (18%), Positives = 233/655 (35%), Gaps = 122/655 (18%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  I T +            +    + +D    +    +D       D      + 
Sbjct: 1   MKFISIDIETFS----SVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYG------ISMRGFEDIMLMSYVLDSG 499
            EI++ L     ++  +K   N +++++ L    G      +S + ++  M+ +  L   
Sbjct: 57  IEIINALT----DDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLP 112

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE-----NSNVILQLWL 554
            S   + ++    L + ++++ +  K+ I    I  S  + +        + ++      
Sbjct: 113 LSLEGVGAV----LGFKKQKLSQ-GKNLIKYFCIPCSPTKSNGGRTRNLPHHDIEKWKMF 167

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT--------GIQIDQDLLKQVSAEISKNL 606
               K  VE  + +  +L K  +                 GI +D D ++Q  +   K  
Sbjct: 168 TFYNKRDVETEMAIQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFK 227

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
               +   +L+G + N +SP QL D L        G KT +      A   E +   D  
Sbjct: 228 AENIKKAKELTGLE-NPNSPAQLKDWL-----LKQGMKTDSLSK---AVVSELLQDSDGE 278

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-- 724
           I + +   +QL+K       S+ N +   ++         +  TGR +     +QN+P  
Sbjct: 279 IHEALSIRQQLAKSSVKKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQN 338

Query: 725 --------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
                                     I + L + IR AFI     + I AD+S IE R++
Sbjct: 339 HLPDLKQARSLVKSGNFTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVI 398

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFR 816
           A +A       VF    DI+   A+++F V ++K  ++  +R+  K    ++ YG S   
Sbjct: 399 AWLAGERWRIDVFAGGGDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGA 458

Query: 817 L----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR------------------ 854
           L    A Q+ +   E    +  + +  P I     +    V+                  
Sbjct: 459 LKAMGAIQMGLVEDELKPIVDAWRNSNPNITSLWWRIDRAVKTVVKTKQPIEIYGIGIFY 518

Query: 855 QNG--YVETIFGRRIHY--DEINSPKSSIRNI----------NERAAINAP------IQG 894
           Q+G  +++   GRR+ Y    I   +    ++           ER     P      +Q 
Sbjct: 519 QSGILFIKLPSGRRLAYVKPLIGENRFGGESVTYEGVGGTKKWERIESYGPKFVENIVQA 578

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--EEITTASQIIVHS 947
            + DI   AM+     L  H+    +++ +HDE+V E P     +    +I+  +
Sbjct: 579 ISRDILAEAMLK----LATHEFQ--IVMHVHDEVVIEAPNKVSSVEEICRIMSET 627


>gi|68299732|ref|YP_249581.1| DNA polymerase [Vibriophage VP4]
 gi|66473271|gb|AAY46280.1| DNA polymerase [Vibriophage VP4]
          Length = 678

 Score =  171 bits (434), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 106/639 (16%), Positives = 198/639 (30%), Gaps = 142/639 (22%)

Query: 460 EHFLKIGHN-IKYDKLVLH---------RYGISMRGFEDIMLMSYVLDSG---------- 499
           E  + + HN IKYD   L             I  +   D ++MS +L S           
Sbjct: 54  EGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDAGLLR 113

Query: 500 --------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
                     SH + +   + L   + +  +   + I  +      + ++  ++  V L+
Sbjct: 114 SGRITGKLYGSHSLKAWGMR-LGELKGDYGEQEAAWIEFN----EPMMDYCKQDVQVTLK 168

Query: 552 LWLLLRPKLI-----VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV-------S 599
           L+             V+ L      L+     ++++ E  G   D    +++        
Sbjct: 169 LFEKFMGDTWYFPNGVDGLSESVL-LEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227

Query: 600 AEISKNLLSLEENIYDLSGEK--------------------------------------- 620
           AEI   L     + Y+  G                                         
Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKRPTLAKTL 287

Query: 621 --------------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ------DLEQI 660
                         FN SS   +  +L     +     T+ G             + + I
Sbjct: 288 YLKDAPFTPIQHVTFNPSSRAHIIKVLKD-CGWVPTDFTEAGNPIVDDDTLSLVIEHKLI 346

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLE 717
                P ++ I E+  + K+    A+           +   +H   +    +TGR     
Sbjct: 347 PEEFIPKVELIKEYLVIQKLIGQLAEGDNAWLRM--DKGGYIHGQVNPNGAVTGRATHSY 404

Query: 718 PNLQNIP-IKTDLGQKIRRAFISPPT--------KKLISADYSQIELRILAHIAKITPLY 768
           PNL  +P I+   G + R  F +              +  D S +ELR L H        
Sbjct: 405 PNLAQVPSIRKYKGVECRSLFGAEHHLDYHTGKPWIQVGVDASGLELRCLGHF------M 458

Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI----P 824
             F++   I+ ++  +I   N        R +AKT  +  +YG    ++   +       
Sbjct: 459 AKFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEG 518

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKT----KNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           +   A+ IK++    P I    E+         +  G  + I  +R     ++  K  +R
Sbjct: 519 KKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRKWIKGLDGRKVHVR 578

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM------LLQIHDELVFEVPE 934
           +    AA+N  +Q + A I ++ ++   K +               +  +HDE       
Sbjct: 579 S--PHAALNTLLQSAGALICKKWIVEWDKGMRAAGYKHGWDGDYCFMAWVHDEAQLACRT 636

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +EI   +  I     +      N R PL    K+  NW 
Sbjct: 637 QEIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIGANWA 675


>gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
          Length = 645

 Score =  171 bits (434), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 103/642 (16%), Positives = 210/642 (32%), Gaps = 128/642 (19%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            + + S  I T              +            +     D       D      +
Sbjct: 3   KMRTLSIDIET----YSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQI 58

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-G--ISMRGFEDIML----------- 491
            +E++S L     +    K   N  ++++ L  + G  +   G+   M+           
Sbjct: 59  PEEVISAL----SDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSL 114

Query: 492 ----MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP---IDKISDSQVQEHAIE 544
                +  L+  + +     I  ++     +    +   +      D     + + + + 
Sbjct: 115 ESAGAALGLEKQKLTEGKDLI--RYFCVPCRPTKANGGRTRNRPEHDPEKWERFKAYNLR 172

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           +    +Q+   L    + + +   Y         +  ++   GI +D +L++Q  A  ++
Sbjct: 173 DVETEMQIQKRLSNFPVPDAIWEEYH--------LDQEINDRGIGVDMELVRQAIAMDAR 224

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L + + +L+G   N +S +Q+   L            K           E +    
Sbjct: 225 SREQLTDALQELTGLD-NPNSVQQMKQWLADHGLETDTLGKK--------VVAELVRSAP 275

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
            P+   +   +QL+K       ++ N +    +    F    +  TGR +     LQN+P
Sbjct: 276 EPLKTVLSLRQQLAKSSVKKYAAMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLP 335

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       I   L Q IR AF+    +K I AD+S IE R
Sbjct: 336 QNHMSDLAQARALMRGGNYEAISMLYEDIPDTLSQLIRTAFVPQDGRKFIVADFSAIEAR 395

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISP 814
           ++A  A      +VFE+  DI+   A+++F V +EK  V+  +R+  K    ++ YG S 
Sbjct: 396 VIAWFAGERWRLKVFEDGDDIYSASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSV 455

Query: 815 FRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ----------NG--- 857
             L    A ++ +   E    +  +    P I ++       V++          +G   
Sbjct: 456 GALKSMGALEMGLAEEELQPLVDAWRTSNPMITQFWWDVDRAVKECVKKRVPMESHGLHF 515

Query: 858 -------YVETIFGRRI------------------HYDEINSPKSSIRNINERAAINAPI 892
                  ++    GRR+                  +     + K           +   +
Sbjct: 516 DYRSAMLFITLPSGRRLAYVKPRIGENQFGRESVTYMGVSGAKKWERLESYGPKFVENIV 575

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
           QG+A DI   AM ++            ++  +HDE++ E   
Sbjct: 576 QGTARDILCYAMRTLRN--------CAIVAHVHDEIIIEADR 609


>gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 596

 Score =  171 bits (434), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 103/593 (17%), Positives = 213/593 (35%), Gaps = 77/593 (12%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK-VETIFIDLSVHTSQDSTGKNTLTKEI 449
            F   T     +  + + +     D + D           +   H S+            
Sbjct: 24  GFDTETYYSKGYDIRSLGVDAYVADPRFDCYLASFWGPHGNFVGHPSEC----------- 72

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR--------YGISMRGFEDIMLMSYVLDSGRS 501
                 + E    + I HN ++D+ V  R          I  R + D   ++  L + R+
Sbjct: 73  -----PWEEFNDCVWISHNARFDRAVFFRMKELGIVPAHIMPREWHDSAALAVYLQAPRN 127

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKL 560
              +A  A+K L     + ++     I    +  D  V ++A++++ +  +LW+    K 
Sbjct: 128 ---LAGAAEKLLGEKPNKAIRDAMKGIQGGLLCHDKAVLDYALDDARLACELWISHCDKW 184

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-E 619
             +         ++ +  +  +    G+ +DQ  +++    +++      +   +L    
Sbjct: 185 PKK---------ERLLSQLTIEQGEYGVHLDQKRIREGIETLTQVRD---DEATNLPWFP 232

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +   SSPK   +    + + P    T     +T  Q+  +      P +K++ EWR+ ++
Sbjct: 233 RLKPSSPKAFAEAC-QQARIPIPNSTSEDDPQT--QEWIERYGERYPWLKHMSEWRKANR 289

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA-SLEPNLQNIPIKTDLGQKIRRAFI 738
           +     +++ +   +            +  TGR A     N QN   +   G   R+  +
Sbjct: 290 ML-KVLETMQSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNREAYYGVDPRKCLV 348

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI---HRMVAAEIFGVNIEKVSP 795
           + P  KLI AD SQIE R+LA IA    L+    N L I   H   +    G +++K + 
Sbjct: 349 ARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQAHAETSMNWKGGDLKKENS 408

Query: 796 QMRRHAKTINFSIIYGISPFRL-----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            +   AK     + YG              L +   EA   +  +    P I    +  +
Sbjct: 409 NLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMSIGEAKRTVDDFRKANPRIVSLWQAVE 468

Query: 851 NFVRQN------GYVETIFGRRIH-------YDEINSPKSSIRNINERAAINAPIQGSAA 897
           + +R +       Y+ ++   R                     +          +Q +A 
Sbjct: 469 DSMRYHIGSTFFMYLPSLRSIRYFDVQEEEGLTATTERGGRRLHWYGGKLTENLVQATAR 528

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE---ITTASQIIVHS 947
           D+    ++ +HK+        ++L  +HDE++ EVPE     + T + ++  +
Sbjct: 529 DVFAEGLLRIHKA------GIRILWTVHDEVICEVPENSDITVETVTDLLAQT 575


>gi|157273314|gb|ABV27213.1| DNA polymerase I [Candidatus Chloracidobacterium thermophilum]
          Length = 175

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 5/152 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
              + LFL+D  + IYRA+YA   L+ K  G P NA+ GF ++L KL    +K     + 
Sbjct: 6   NSRHRLFLIDAMAHIYRAYYAVRGLATKA-GQPTNAVFGFTSILRKL----QKTYTPEYL 60

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
            V  D  A +FR   +  YKA+R ++P  L  Q+P++     A  IP +++ G+EADD+I
Sbjct: 61  VVAMDSAAPSFRKAWFDGYKAHRAEMPADLQEQIPVIEKVCDALRIPRVKVDGYEADDLI 120

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
            T   +A + G    I+S DKD+ QLV     
Sbjct: 121 GTLARLAVEHGLEAVIVSNDKDMTQLVREGIS 152


>gi|158425221|ref|YP_001526513.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
 gi|158332110|dbj|BAF89595.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
          Length = 609

 Score =  171 bits (433), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 118/651 (18%), Positives = 228/651 (35%), Gaps = 103/651 (15%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +    F I T+ +    +      +   D  D       T       +   +   +    
Sbjct: 1   MSHLIFDIETNGL--LDATNRVHCLCIKDA-DTGQVWSCTDDGPTGTYIPIERGLQLLAD 57

Query: 447 KEILSYLKKFFENEHFLKIGHNI-KYDKLVLHRYG--ISMRGF-EDIMLMSYVLDSGRSS 502
            E+L              IGHNI K+D   L +       +G   D ++ S ++      
Sbjct: 58  AEVL--------------IGHNILKFDIPALQKVYPWWKPKGVLRDTIVCSRLIWPKDDL 103

Query: 503 HD---------------IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            +               I   A +   Y   E     K   P D +   ++Q++  ++  
Sbjct: 104 RERDFRLQKQGKLPGNLIGRYALEAWGYRLGEYKGDYKG--PWD-VWSQEMQDYCEQDVE 160

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           V  +L+  ++ K   E+ + +    +  +  ++ + E  G   DQ     + A++ +   
Sbjct: 161 VTFRLYQKIKEKGWKEESIEL----EHRVQWIIHRQEQYGFLFDQAKAASLYADLVQRKT 216

Query: 608 SLEENIYDLS----------------------GEKF--------NLSSPKQLGDILFTKL 637
            LE  +                          G  F          SS   +   L  K 
Sbjct: 217 ELEAELQSAFPPWEVESVFVPKVNNRVRGYVKGVPFTKRRTIHFKPSSRDHIAGRLKAKY 276

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK---STYADSLPNHINK 694
            +     T  G+ K        ++    P  K + E+  + K     +T  ++   H+  
Sbjct: 277 GWEPSEFTDEGKPKVDEDV---LSHLPYPEAKLLSEYLMVEKRLGQIATGKEAWLKHVKA 333

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQI 753
              R+H   +    +TGR+   +PN+  +P   +  G + R  F++   K L+  D   +
Sbjct: 334 DG-RIHGDVTTNGAVTGRMTHSKPNIAQVPGNGSPYGHRCRELFVAAKRKLLVGCDADAL 392

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
           ELR LA               L+  + +  ++  +N + +    R  AK   ++ IYG  
Sbjct: 393 ELRCLAGYMARYDGGAYVRTVLEGKKELGTDMHTLNAKALGC-SRDVAKVWFYAFIYGAG 451

Query: 814 PFRLATQLRIPRSEAADYIKRYFHRF----PGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
            F+L T L  P+ E   + +R   RF    P +   I+K +  V++ G++  + GR    
Sbjct: 452 DFKLGTILGAPKGEEQKWGRRSRARFLKALPALGTIIKKVQEKVQKKGFLRGLDGRE--- 508

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL----ATKMLLQIH 925
                    +R  +  +A N  +Q + A + + A++ + + L+          + +  +H
Sbjct: 509 ---------LRVRSAHSAFNTLLQSAGAVLMKMALVLLDEDLQAAGYVPGQHYEFVANVH 559

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           DE   EV EE      +  V ++ +A         PL  N  V  +W E +
Sbjct: 560 DEWQIEVNEEIAEDVGKRAVTAIVRAG-EHFGFGCPLSGNFAVGRSWAETH 609


>gi|300742225|ref|ZP_07072246.1| putative DNA polymerase I [Rothia dentocariosa M567]
 gi|300381410|gb|EFJ77972.1| putative DNA polymerase I [Rothia dentocariosa M567]
          Length = 579

 Score =  171 bits (433), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 96/441 (21%), Positives = 158/441 (35%), Gaps = 57/441 (12%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIY- 614
           L +    +     V +++E  GI  D  +      EI             L+ L E I  
Sbjct: 162 LRLLAAAESAGSLVAAEIEYYGIPFDTAVHDAHLTEILGPRPPEGEHPAKLMELAEQIRA 221

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           DL     N  SP++L   L       +   T++   K  A++          +I+ IL +
Sbjct: 222 DLFAPHLNPDSPQELLRALHAAG--VNVPSTRSYVLKGWAEETATQRERRWVLIEPILRY 279

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           ++L +I +    S  +    R  R      +    TGR  +       +P       +IR
Sbjct: 280 KKLYRIFTANGWSWADSWV-RNGRFRPHLEVGGAATGRWGASGGGALQLPA------EIR 332

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
            A ++P  +  + +D SQIE RILA ++    L        D++  +A       +E V+
Sbjct: 333 SAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGR-GTDMYTGIAELA---RLEGVA 388

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK    +I+YG     +   L                 FP   E+ E+      
Sbjct: 389 LTERAQAKVGLLAIMYGGRSGEIGALLPHVAKL-----------FPRAMEFTERAARIGE 437

Query: 855 QNGYVETIFGRR--------------IHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
             G V T  GR                      S   S+     R   N  +QG+AA+  
Sbjct: 438 VGGQVTTFLGRTSPTPDERFKRTVADRSTPAAESRAVSLSRSYGRMTRNFVVQGTAAEWA 497

Query: 901 RRAMISVHKSLEDH-----KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
              M  V   L         + TK++  +HDEL+   P+ E     +I+  S  +A    
Sbjct: 498 LCWMGRVRSRLLTETVFGMPMRTKIVYFLHDELLLCGPKLEAERVERILRESAAEAARLL 557

Query: 956 INLRVPLK--VNIKVSNNWQE 974
               VP++  V++ V+ N+ E
Sbjct: 558 FG-TVPVEFPVSVTVTTNYAE 577


>gi|17570813|ref|NP_523322.1| gene 5B protein [Enterobacteria phage T3]
 gi|579192|emb|CAA35141.1| 5B [Enterobacteria phage T3]
 gi|17384297|emb|CAC86285.1| gene 5B protein [Enterobacteria phage T3]
          Length = 372

 Score =  171 bits (433), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 80/381 (20%), Positives = 137/381 (35%), Gaps = 35/381 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 2   FNPSSRDHIQKKLQEAGWVPT-KFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 60

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 61  QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQC 119

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 120 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 173

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 174 HTKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 233

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 234 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 291

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  IHDE+      EEI      +     +     
Sbjct: 292 LWIIKTEEMLVEKGLKHGWDGDFAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEH 351

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
            N R  L    K+  NW+E +
Sbjct: 352 WNFRCLLDTEGKMGANWKECH 372


>gi|325171294|ref|YP_004251265.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512000|gb|ADX87462.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512146|gb|ADX87605.1| DNA polymerase [Vibrio phage ICP3_2008_A]
 gi|323512194|gb|ADX87652.1| DNA polymerase [Vibrio phage ICP3_2007_A]
          Length = 678

 Score =  171 bits (433), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 103/638 (16%), Positives = 194/638 (30%), Gaps = 140/638 (21%)

Query: 460 EHFLKIGHN-IKYDKLVLH---------RYGISMRGFEDIMLMSYVLDSG---------- 499
           E  + + HN IKYD   L             I  +   D ++MS +L S           
Sbjct: 54  EGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDAGLLR 113

Query: 500 --------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
                     SH + +   + L   + +  +   + +  +      + ++  ++  V L+
Sbjct: 114 SGRITGKLYGSHSLKAWGMR-LGELKGDYGEQEAAWVEFN----EPMMDYCKQDVQVTLK 168

Query: 552 LWLLLRPKLI-----VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV-------S 599
           L+              + L      L+     ++++ E  G   D    +++        
Sbjct: 169 LFEKFMGDTWYFPNGADGLSESVL-LEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227

Query: 600 AEISKNLLSLEENIYDLSGEK--------------------------------------- 620
           AEI   L     + Y+  G                                         
Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287

Query: 621 --------------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
                         FN SS   +  +L      P+                  I     P
Sbjct: 288 YLKDAPFTPVQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLVP 347

Query: 667 I-----IKNILEWRQLSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                 ++ I E+  + K+    A+           +   +H   +    +TGR     P
Sbjct: 348 EEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRM--DKGGYIHGQVNPNGAVTGRATHSYP 405

Query: 719 NLQNIP-IKTDLGQKIRRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQ 769
           NL  +P I+   G + R  F +              +  D S +ELR L H         
Sbjct: 406 NLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVDASGLELRCLGHF------MA 459

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI----PR 825
            F++   I+ ++  +I   N        R +AKT  +  +YG    ++   +       +
Sbjct: 460 KFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEGK 519

Query: 826 SEAADYIKRYFHRFPGIHEYIEKT----KNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
              A+ IK++    P I    E+         +  G  + I  +R     ++  K  +R+
Sbjct: 520 KAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRKWIKGLDGRKVHVRS 579

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEE 935
               AA+N  +Q + A I ++ ++   K ++              +  +HDE       +
Sbjct: 580 --PHAALNTLLQSAGALICKKWIVEWDKGMQAAGYKHGWDGDYCFMAWVHDEAQLACRTQ 637

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           EI   +  I     +      N R PL    K+  NW 
Sbjct: 638 EIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIGANWA 675


>gi|297192970|ref|ZP_06910368.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151581|gb|EFH31247.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 406

 Score =  171 bits (433), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 79/437 (18%), Positives = 151/437 (34%), Gaps = 85/437 (19%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ + V  E+           + L  L + +  
Sbjct: 1   MRLLTAAESAFMLVATEMNRAGLPWRADVHRAVLHELLGERYAGGGEPRRLAELADEVSA 60

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +                 +    ++   D+P +K ++E++
Sbjct: 61  AFGRRVRPDLPADVVRA-FAQAGIKV-----------RSTRRWELEEIDHPAVKPLIEYK 108

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I + +    L + +  R  R    Y    +++GR  +       IP        IR
Sbjct: 109 KLYRIWTAHGWSWLQDWV--RDGRFRPGYLPGGSVSGRWTTNGGGALQIPK------VIR 160

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++    +L+ AD  Q+E R+LA I++   L +V  +  D++  ++   F  +     
Sbjct: 161 RAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHDGDLYTSLSDRAFSGD----- 215

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R HAK      IYG +       L                RFP    Y++       
Sbjct: 216 ---RDHAKIALLGAIYGQTSGDGLKNL-----------AALRRRFPRAVAYVDDAAKAGE 261

Query: 855 QNGYVETIFGRRIH---------------------------YDEINSPKSSIRNINERAA 887
           +   V T  GR                                   S  +  R    R  
Sbjct: 262 EGRLVRTWLGRTSPRAAGAGDDDEAGIPQEPVEAAPADGEFTPGYASTNARARG---RFT 318

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
            N  +QGSAAD     + ++ ++     +  +++   HDE++   P EE    ++ I  +
Sbjct: 319 RNFVVQGSAADWALLMLAALRQA--TAGMRAELVFFQHDEVIVHCPAEEARDVAEAIRSA 376

Query: 948 MEKA---CLPKINLRVP 961
            E A      +  +R P
Sbjct: 377 GELAGRIAFGETPVRFP 393


>gi|17570811|ref|NP_523320.1| DNA polymerase [Enterobacteria phage T3]
 gi|118853|sp|P20311|DPOL_BPT3 RecName: Full=DNA polymerase
 gi|15702|emb|CAA35140.1| 5 [Enterobacteria phage T3]
 gi|17384295|emb|CAC86283.1| DNA polymerase [Enterobacteria phage T3]
          Length = 704

 Score =  171 bits (433), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 80/381 (20%), Positives = 137/381 (35%), Gaps = 35/381 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 452 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 565

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  IHDE+      EEI      +     +     
Sbjct: 624 LWIIKTEEMLVEKGLKHGWDGDFAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEH 683

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
            N R  L    K+  NW+E +
Sbjct: 684 WNFRCLLDTEGKMGANWKECH 704


>gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
          Length = 655

 Score =  170 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 124/681 (18%), Positives = 227/681 (33%), Gaps = 138/681 (20%)

Query: 387 IGSASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
           + + +  + T  ++D   S     A    +  D         F D  V    D T    L
Sbjct: 1   MTTLAIDVETYSSIDIKTSG----AYKYCEAPDFEILLFAYAFNDEPVQIV-DFTQHEAL 55

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-----MRGFEDIMLMSYVLDSGR 500
            + ++  L     +   +K   N  +++  + ++G+S        +E  M+ +  L    
Sbjct: 56  PQRVIDAL----YDPDVIKTAFNANFERSAI-KFGVSSLPCPPGQWECTMIKALTL-GLP 109

Query: 501 SSHDI--ASIAQKWLSYTRKE-------ILKSRKSSIPIDKISD----------SQVQEH 541
           SS D+   ++  +      KE         K  K +   DK +              +E+
Sbjct: 110 SSLDMVGKALKLEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEY 169

Query: 542 AIENSNVILQLWLLL---RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
              +  V  ++  LL     K   +KL  + + +              GI  D  L+KQ 
Sbjct: 170 CKRDVEVEREIRNLLNRYETKAEEQKLWQLDQHI-----------NDRGIDTDLILIKQA 218

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
               +     L +    L+G + N +SP Q+   +  +L     + TKT          E
Sbjct: 219 IECDTNYTERLTKAAIKLTGLE-NPNSPTQIKKWIGERLGREVKSLTKTSIPGLIE---E 274

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
             +   + +IK +   + ++K      D++ N   K  +         +  TGR A    
Sbjct: 275 AKDLNKSEVIKMLELRQLMAKTSIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLV 334

Query: 719 NLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADY 750
            +QN+P                            +   L Q IR AFI     + I +D+
Sbjct: 335 QVQNLPQNHLPDLDNARNFVREGKFEEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDF 394

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSI 808
           S IE R++A  A       VF     I+   A+++F V IE +    ++R+  K    ++
Sbjct: 395 SAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFKVPIESIKKGSELRQKGKIAELAL 454

Query: 809 IYGISPFRLA---TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
            YG S   L+    +  IP  E    +K + +  P I ++        ++     T    
Sbjct: 455 GYGGSVGALSSMDRKKSIPEEELPGLVKSWRNANPNITKFWWDVDKAAKKAIRERTTVNL 514

Query: 866 RIHYDEINSP-----------------------------------KSSIRNINERAAINA 890
           +     I  P                                           +R     
Sbjct: 515 QYGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFSGDKITYEGMEQTSKQWKRIDTYG 574

Query: 891 P------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           P      +Q ++ D  R AM  V+K          +++ +HDE+V ++P++      + I
Sbjct: 575 PKLVENIVQATSRDCLREAMFRVNKE------GYDIVMHVHDEVVLDIPKDRA--TVKEI 626

Query: 945 VHSMEKACLPKINLRVPLKVN 965
              M +       L  PLK +
Sbjct: 627 NELMGQPIKWAPGL--PLKAD 645


>gi|323512097|gb|ADX87557.1| DNA polymerase [Vibrio phage ICP3_2009_A]
          Length = 678

 Score =  170 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 102/638 (15%), Positives = 194/638 (30%), Gaps = 140/638 (21%)

Query: 460 EHFLKIGHN-IKYDKLVLH---------RYGISMRGFEDIMLMSYVLDSG---------- 499
           E  + + HN IKYD   L             I  +   D ++MS +L S           
Sbjct: 54  EGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDAGLLR 113

Query: 500 --------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
                     SH + +   + L   + +  +   + +  +      + ++  ++  + L+
Sbjct: 114 SGRITGKLYGSHSLKAWGMR-LGELKGDYGEQEAAWVEFN----EPMMDYCKQDVQITLK 168

Query: 552 LWLLLRPKLI-----VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV-------S 599
           L+              + L      L+     ++++ E  G   D    +++        
Sbjct: 169 LFEKFMGDTWYFPNGADGLSESVL-LEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227

Query: 600 AEISKNLLSLEENIYDLSGEK--------------------------------------- 620
           AEI   L     + Y+  G                                         
Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287

Query: 621 --------------FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
                         FN SS   +  +L      P+                  I     P
Sbjct: 288 YLKDAPFTPVQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLVP 347

Query: 667 I-----IKNILEWRQLSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
                 ++ I E+  + K+    A+           +   +H   +    +TGR     P
Sbjct: 348 EEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRM--DKGGYIHGQVNPNGAVTGRATHSYP 405

Query: 719 NLQNIP-IKTDLGQKIRRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQ 769
           NL  +P I+   G + R  F +              +  D S +ELR L H         
Sbjct: 406 NLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVDASGLELRCLGHF------MA 459

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI----PR 825
            F++   I+ ++  +I   N        R +AKT  +  +YG    ++   +       +
Sbjct: 460 KFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEGK 519

Query: 826 SEAADYIKRYFHRFPGIHEYIEKT----KNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
              A+ IK++    P I    E+         +  G  + I  +R     ++  K  +R+
Sbjct: 520 KAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRKWIKGLDGRKVHVRS 579

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEE 935
               AA+N  +Q + A I ++ ++   K ++              +  +HDE       +
Sbjct: 580 --PHAALNTLLQSAGALICKKWIVEWDKGMQAAGYKHGWDGDYCFMAWVHDEAQLACRTQ 637

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           EI   +  I     +      N R PL    K+  NW 
Sbjct: 638 EIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIGANWA 675


>gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
 gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
          Length = 640

 Score =  170 bits (431), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 104/591 (17%), Positives = 197/591 (33%), Gaps = 112/591 (18%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-G--ISMRGFEDIMLMSY 494
           D      L   +L  L     +    K  +N  +++  L  Y G  +   G+   M+ + 
Sbjct: 48  DLASGEQLPDAVLDAL----ADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAA 103

Query: 495 VLDSGRSSHDIASI----------AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
            L    S  D+  +           +  + +       S++     D       + +   
Sbjct: 104 TLGLPLSLKDVGKVLNLDAQKMDEGKDLIKHFCVPDDNSQRRLPSSDPAGWKLFKMYNAR 163

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           +  V   +   L    + + L   YE        V  ++   GI+ID  L     A   +
Sbjct: 164 DVEVETAIRQKLADFPVPDYLWEQYE--------VDQRINDRGIRIDTTLAANAIAIDEE 215

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +        + L+G   N +SP QL + L  +   P  +  K           + +    
Sbjct: 216 HRAQALARAHKLTGLD-NPASPLQLQEWL-NQHGCPIESMAK-------ESVDDALANAT 266

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
             + + +   ++LS+        + +      +         +  TGR A     +QN+P
Sbjct: 267 GQVREALELRQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLP 326

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       +   L Q IR AFI     + I ADYS IE R
Sbjct: 327 RNYLPDLTQARGLVRDGNGETLEMLYSSVPDTLSQLIRTAFIPSGAHRFIVADYSAIEAR 386

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISP 814
           +LA +A        F+N  D++   A+ +FGV +EK  V+ ++R+  K    +  Y  S 
Sbjct: 387 VLAWLAGEETTLAAFKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSV 446

Query: 815 FRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----------------- 853
             L    A ++ +   E    +  +    P I +   K  N                   
Sbjct: 447 GALKAMGALKMGLSEDELQPIVDAWRQANPNIVQLWHKVDNAATRAISTGRPLTLRNLGF 506

Query: 854 -RQNG--YVETIFGRRI------------------HYDEINSPKSSIRNINERAAINAPI 892
            +++G  ++    GRR+                  ++ +  + K           +   +
Sbjct: 507 EKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSITYWGQGVARKWQKLETYGGKLVENIV 566

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           Q +A D+   A+  +  +        ++++ IHDE+V + P    TT + I
Sbjct: 567 QATARDLLAEAITRIENA------GHQIVMHIHDEVVIDEPINSGTTVADI 611


>gi|71662488|ref|XP_818250.1| DNA polymerase theta (polymerase domain only) [Trypanosoma cruzi
           strain CL Brener]
 gi|70883490|gb|EAN96399.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score =  170 bits (431), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 131/757 (17%), Positives = 270/757 (35%), Gaps = 137/757 (18%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
           S   S ++     +     +S++  +   +  ++     +  +Q L   G     +  + 
Sbjct: 129 SPATSSRSRADAAVAATSNVSKHRGDYCRFKDVL--MVCEPLLQGLL--GPVGIDVEMNG 184

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI---LSYLKK 455
             A    P   A +    +  +   +      + +          TL   +   L +L K
Sbjct: 185 TTAMLRDPNGFATALDSLEKASCDSLRHFHDSIQLFFIIRGDSFYTLDSSVCSPLVFLAK 244

Query: 456 FFENEHFLKIGHNIK-YDKLVLHRYG---ISMRGFEDIMLMSYVLD----SGRSSHDIAS 507
                   KI H  +   +L+    G   + +R   DI + S V++        +   A 
Sbjct: 245 LLSVPAVTKIVHQAQPIYRLLFMFLGTDRVEVRNLVDISVWSAVVERVCGPRPYTKGFAD 304

Query: 508 IAQKW--LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
               W  L  T +E ++ +      ++  +  ++    E + V+         ++ + +L
Sbjct: 305 SQSLWQSLPETSRESIEVQLEKAKQERWCEGTLKAEEGEATMVLSSSSPSSSGEMPLPQL 364

Query: 566 LHVYERL---------------------------------DKPMIDVVSQMEITGIQIDQ 592
           L  ++ L                                 +  +  +   M   G+ +++
Sbjct: 365 LGRFKSLATLYAYYEAYLQSVESSGATGNVFMSLFTVCSLETRVSFLCEVMSYHGMFVEK 424

Query: 593 DLLKQVSAEISKNLLSLEEN-------IYDLSGEKFNLSSPKQ--LGDILFTKLKFP--- 640
           ++L  + A++ + + +L E        +   S E  ++ +     L   L ++   P   
Sbjct: 425 NMLDSMVADLEQQIKALIEKGNVALRAMATASNESIDMETVDAWNLIKTLQSQFGGPWTF 484

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN---------- 690
           +    +    +  A   E+ +C D+ + +  L   +  + K +  +              
Sbjct: 485 AKGNVEEQMQQIGAYLDEKQSCADSNVARIWLALHERREFKRSLMEGFTKGASMQARLIA 544

Query: 691 ------------HINKRTQR--------VHTFYSLASTMTGRLASLEPNLQNI------- 723
                       H N             VH  +S+    T RL    P LQ +       
Sbjct: 545 VPEEMASTEGGGHSNPHHVGAQYRLFFSVHAKWSVHHATTSRLFCSRPCLQTVAKNPPIS 604

Query: 724 ----------PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
                      I T+    +R  +  PP   L+S D++QIELR++AH++    L Q    
Sbjct: 605 RTAPSSSPPVTIFTNPEWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRG 664

Query: 774 SLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR---------- 822
             D+   +A  +  +  +  V+P +R+  K + + ++YG+ P  L  +LR          
Sbjct: 665 GSDVLAEMALRVMQLPRLADVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKETTPSA 724

Query: 823 -IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881
             P   A  +++ +   +P +  ++  T+          T+ G R   D    P  + R 
Sbjct: 725 EQPPLSARQFLRSFNQCYPAVQGFLRSTRLRAFHEKRCTTLNGLR---DLSGEPDGNRRK 781

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKL-------ATKMLLQIHDELVFEVPE 934
                A+   IQG AA I   AM+ VH+  + H+L       A  ++L +HDELV+ VP+
Sbjct: 782 Q---MAVALAIQGGAAVILHHAMVEVHE--KRHELLPFLPAAAVALVLSVHDELVYAVPD 836

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971
             ++  +  I   +E+     ++L VPL V++K   +
Sbjct: 837 SAVSIVAPKIKQILEQQAA-ALSLSVPLPVSMKAGKS 872


>gi|37956824|gb|AAP34091.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score =  170 bits (431), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 134/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 334 FNPSSRDHIQKKLQETGWIPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 452 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 565

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      EEI      I     +     
Sbjct: 624 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIEIAQEAMRWVGDH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 WNFRCLLDTEGKMGPNWA 701


>gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK1057]
          Length = 643

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/672 (17%), Positives = 226/672 (33%), Gaps = 132/672 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T              +            +     D +     D      + 
Sbjct: 1   MKTLSIDIET----YSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMS---------- 493
           +EIL  L     ++  +K   N  ++++ L ++    +S + +    +++          
Sbjct: 57  EEILLALL----DDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLE 112

Query: 494 ---YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ---VQEHAIENSN 547
               VL+         S   ++     K    +          +       + +   +  
Sbjct: 113 GVGRVLNIEEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVE 172

Query: 548 VILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           V   + + LR  P L  E+    + +LD+       ++   GI++DQ L++Q        
Sbjct: 173 VEQAIRVRLRNYPLLESEQ---FFYQLDQ-------EINDRGIEVDQQLVEQAILCDLSY 222

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
              + +  Y+LSG + N +S  QL   L  +  F      K        +  + +   D 
Sbjct: 223 KEQVTKRAYELSGLE-NPNSVSQLKGWLEEQGVFMDSLGKK--------EVAKHLKEADG 273

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP- 724
            +++ +     +SK       ++   +    +         +  TGR A     +QN+P 
Sbjct: 274 EVLEMLKLRLLMSKTSVKKYQAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQ 333

Query: 725 ---------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                                      +   L + IR AF+     + I AD++ IE R+
Sbjct: 334 NKLKDLSLARTLVKEGQVETLDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARV 393

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPF 815
           LA ++  +   +VFE   DI+   A+ +FGV +EK   +  +R+  K    ++ YG S  
Sbjct: 394 LAWLSGESWRLEVFEQGGDIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVG 453

Query: 816 RL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR----------------- 854
            L    A  + +   E    + ++    P I  +  +     +                 
Sbjct: 454 ALTAMGALDMGLEEEELQPLVNQWRSANPHIVAFWWEIDKVAKQVYETREPKKIKNLVIS 513

Query: 855 -QNG--YVETIFGRRIHY------------------DEINSPKSSIRNINERAAINAPIQ 893
            Q+G  ++    GR++ Y                      S K +         +   +Q
Sbjct: 514 YQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLTYEGIGESKKWTRLETYGPKLVENIVQ 573

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G A D+    MI     L+   LA  ++L +HDE V EV EE +    Q++      A  
Sbjct: 574 GIARDLLAYGMI----QLKQKGLA--IVLHVHDEAVVEVREESVAKVCQLL------ATK 621

Query: 954 PKINLRVPLKVN 965
           P     +PL+ +
Sbjct: 622 PDWAEGLPLRAD 633


>gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK72]
          Length = 643

 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 116/672 (17%), Positives = 226/672 (33%), Gaps = 132/672 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T              +            +     D +     D      + 
Sbjct: 1   MKTLSIDIET----YSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMS---------- 493
           +EIL  L     ++  +K   N  ++++ L ++    +S + +    +++          
Sbjct: 57  EEILLALL----DDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLE 112

Query: 494 ---YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ---VQEHAIENSN 547
               VL+         S   ++     K    +          +       + +   +  
Sbjct: 113 GVGRVLNIEEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVE 172

Query: 548 VILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           V   + + LR  P L  E+    + +LD+       ++   GI++DQ L++Q        
Sbjct: 173 VEQAIRVRLRNYPLLESEQ---FFYQLDQ-------EINDRGIEVDQQLVEQAILCDLSY 222

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
              + +  Y+LSG + N +S  QL   L  +  F      K        +  + +   D 
Sbjct: 223 KEQVTKRAYELSGLE-NPNSVSQLKGWLEEQGVFMDSLGKK--------EVAKHLKEADG 273

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP- 724
            +++ +     +SK       ++   +    +         +  TGR A     +QN+P 
Sbjct: 274 EVLEMLKLRLLMSKTSVKKYQAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQ 333

Query: 725 ---------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                                      +   L + IR AF+     + I AD++ IE R+
Sbjct: 334 NKLKDLSLARTLVKEGQFETLDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARV 393

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPF 815
           LA ++  +   +VFE   DI+   A+ +FGV +EK   +  +R+  K    ++ YG S  
Sbjct: 394 LAWLSGESWRLEVFEQGGDIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVG 453

Query: 816 RL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR----------------- 854
            L    A  + +   E    + ++    P I  +  +     +                 
Sbjct: 454 ALTAMGALDMGLEEEELQPLVNQWRSANPHIVAFWWEIDKVAKQVYETREPKKIKNLVIS 513

Query: 855 -QNG--YVETIFGRRIHY------------------DEINSPKSSIRNINERAAINAPIQ 893
            Q+G  ++    GR++ Y                      S K +         +   +Q
Sbjct: 514 YQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLTYEGIGESKKWTRLETYGPKLVENIVQ 573

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           G A D+    MI     L+   LA  ++L +HDE V EV EE +    Q++      A  
Sbjct: 574 GIARDLLAYGMI----QLKQKGLA--IVLHVHDEAVVEVREESVAKVCQLL------ATK 621

Query: 954 PKINLRVPLKVN 965
           P     +PL+ +
Sbjct: 622 PDWAEGLPLRAD 633


>gi|325964629|ref|YP_004242535.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470716|gb|ADX74401.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 572

 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/470 (20%), Positives = 170/470 (36%), Gaps = 75/470 (15%)

Query: 534 SDSQVQEHAIENSN-VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++    E+A + +    +      R +L       +    +     + ++M+  G+   +
Sbjct: 145 AEELRAEYAAQQAALATVGQEENQRSRLQ------LLLAAESAGAMIAAEMQHAGVPWRE 198

Query: 593 DLLKQVSAEI----------SKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPS 641
           DL +Q+ AE              L  L + +  L      N  SP+ L   L        
Sbjct: 199 DLHEQILAEHLGPRPPAGHRPAKLEVLNQELRRLLNSPTLNPDSPQDLMRAL-------- 250

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
               + G    T +  E +    +P I  +L ++QLS++ +    S  +       R   
Sbjct: 251 ---HRNGIEVKTTRKWE-LRESSHPAIAPLLAYKQLSRLHTANGWSWLDAWVAGG-RFRP 305

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            Y +   ++GR AS       IP        IR A  + P  KLI AD SQ+E R+L  +
Sbjct: 306 EYVVGGVVSGRWASRGGGALQIPR------NIRGAVHADPGHKLIVADASQLEPRVLVAL 359

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           A+ + + +   +  D++  +AA+ FG +        R  AK      +YG          
Sbjct: 360 AQDSSMAEAARD-QDLYAGIAAKGFGGD--------RAKAKVALLGAMYGA--------- 401

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD---EINSPKSS 878
                EA   + +    +P   +Y+E+        G V T  GR           S +S+
Sbjct: 402 --TSGEAGRLMPQLARTYPRAVDYVEQAARAGESGGTVTTRLGRSSPPPSERWFQSQRSA 459

Query: 879 IRNINERAA----------INAPIQGSAADITRRA----MISVHKSLEDHKLATKMLLQI 924
                 RA            N  +QGSAAD            +    +D  L  +++L +
Sbjct: 460 SAEEQRRAESIARSRGRFTRNFVVQGSAADWAACWLAELRRRLRALRKDLHLNAELVLFL 519

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKI-NLRVPLKVNIKVSNNWQ 973
           HDE++   P E +      I  +   A       + V   V++ V +++ 
Sbjct: 520 HDEVMVHAPVEAVDACITAIEDAARAAKELLFGPIPVEFPVSVAVVDSYD 569


>gi|229917676|ref|YP_002886322.1| 5'-3' exonuclease [Exiguobacterium sp. AT1b]
 gi|229469105|gb|ACQ70877.1| 5'-3' exonuclease [Exiguobacterium sp. AT1b]
          Length = 330

 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 53/304 (17%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVN-----AIAGFCNMLWKLLQNSRKESIA 58
           E  LFL+DG+S +  A Y     SR   G  V+     A+ G   ++  +L+  R     
Sbjct: 2   ERKLFLIDGNSMLASA-YYGAAASRTKKGREVSKNDRSAVIGMTGLIRTILRRHR----P 56

Query: 59  SHFAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           +HF V++D    T +R E+YP YK  R + P  L  Q+ L+R   +  GIP  +++G+E 
Sbjct: 57  THFVVVWDVSRETLWRRELYPGYKRRRRQTPPELKAQMELMRQLLEDSGIPQFQVEGYEG 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---------------------D 156
           +D+IA            V I++ DKDL+QLVSP   ++                      
Sbjct: 117 EDLIAHIARKFSC-SAPVVIMTKDKDLLQLVSPRITVWLQTQELQQMQARCDIRDNRPLP 175

Query: 157 TVKEEKIDIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
             +  +I  E +   + G+ P+++  ++ALTGD  D IP + G+    +  L++ +G+L+
Sbjct: 176 LKRHLEIRPEEIAALYEGLKPKQLSAVKALTGDRSDGIPPVAGLDESQSVQLIKRFGSLD 235

Query: 216 NILINASRIKQKKRRE---------------NILEYAETARLSRKLVMLRTDVPITIPLE 260
            +    S IK +KR++               N+    + A  + +LV L   VP    LE
Sbjct: 236 KLYSALS-IKGEKRQQVNETIAALTSEEVPRNLRRTRKKAERNMELVRLDVTVP---ALE 291

Query: 261 HLIL 264
           HL L
Sbjct: 292 HLKL 295


>gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 649

 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 106/608 (17%), Positives = 191/608 (31%), Gaps = 130/608 (21%)

Query: 457 FENEHFLKIGHNIKYDKL----VLHRYGISM--------RGFEDIMLMSYVLDSGRSSHD 504
             +    K   N  ++++     L R+   +        RG+   M+ +  L        
Sbjct: 63  LTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLG---LPMS 119

Query: 505 IASIAQKWLSYTRKEILKS---------RKSSI----PIDKISDSQVQEHAIENSNVILQ 551
           +   A+       K+              K  I      D +   Q   +   + +V +Q
Sbjct: 120 LDGAAKALRLPIEKDPAGQKLIRRFSIPGKDGIRVLPSDDPVGWQQYISYNRRDVDVEVQ 179

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L   L    ++E     Y         +  ++  TG++ID  L        S++  +   
Sbjct: 180 LASRLARNPMLEAEWETYW--------LDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLA 231

Query: 612 NIYDLSGEKFNLSSPKQLGDILF-TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
               L+G + N +SP QL D L     +  S  KT         +    +      + + 
Sbjct: 232 RAQQLTGLE-NPNSPIQLKDWLAAHGCELESLTKT---------EVEAALETVTGDVAEV 281

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI----- 725
           +   + LS+       ++        +       + +  TGR A     +QN+P      
Sbjct: 282 LRLRQDLSRSSVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPD 341

Query: 726 -----------------------KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                                     L Q IR AFI     + I AD+S IE R+LA +A
Sbjct: 342 LASARSLLNAGNSDALELLYSPLPDTLSQLIRTAFIPSKDHRFIVADFSAIEARVLAWLA 401

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL--- 817
                 Q F    D++   A+ +FGV +EK   + ++R+  K    +  YG S   L   
Sbjct: 402 GEEGTLQAFREGKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAM 461

Query: 818 -ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDE---- 871
            A ++ +  SE    +  +    P + ++    +          T     RIH       
Sbjct: 462 GALRMGLDESELKPLVDAWRDANPMVVQFWHDIEQAAITTVETRTPTQVGRIHLSYRSGC 521

Query: 872 ----------------------------------INSPKSSIRNINERAAINAPIQGSAA 897
                                               + K               +Q +A 
Sbjct: 522 LFIALPSRRELCYPRPRLGENRFGMTSILFDGVDGTTRKWGPIETYGGKLTENLVQATAR 581

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           D+   AM  V  +        ++++ IHDE+V + P +  +   + IV  M +       
Sbjct: 582 DLLTHAMHHVDAA------GHRIVMHIHDEIVVDEPTDGAS--VEDIVTLMTRLPTWADG 633

Query: 958 LRVPLKVN 965
           L  PL  +
Sbjct: 634 L--PLDAD 639


>gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 558

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 156/434 (35%), Gaps = 74/434 (17%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ ++V  E+             L  L E +  
Sbjct: 158 MRLLLTSESAGMLVAAEMNAAGLPWRADIHREVLRELLGERYPGGGEPTRLAELAEEVSA 217

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +     G           +    +I   D+P ++ +LE++
Sbjct: 218 AFGHRVRPDLPADVVKA-FARAGIRVG-----------STRRWEIQSLDHPAVRPLLEYK 265

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I   +    L N +  R  R    +    T+TGR  +       IP        IR
Sbjct: 266 RLYRIWVAHGWSWLQNWV--RDGRFRPEFHAHGTVTGRWVTNGGGALQIPK------VIR 317

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++ P   L+ AD +Q+E R+LA I++   L +V   + D+++ V+   F  +     
Sbjct: 318 RAVVADPGHCLVVADAAQLEPRVLAAISRDPGLMEVAARADDLYQSVSERAFSGD----- 372

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      IYG             + +    +     RFP    Y+++      
Sbjct: 373 ---RAQAKLAVLGAIYGQ-----------TKGDGLKNLAALRRRFPRAVAYVDEAARAGE 418

Query: 855 QNGYVETIFGRRIH--------------YDEINSPKSSI-----RNINERAAINAPIQGS 895
           +   V T  GR                   +  +   S           R A N  +QGS
Sbjct: 419 EGRLVRTWLGRTCPPAAGAGEDAAEEAGIPQEEAGDGSRSVPGDARARGRFARNFVVQGS 478

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS---MEKAC 952
           AAD     + ++ +      LA +++   HDE++   P EE      ++  +     +  
Sbjct: 479 AADWALLLLAALRRGC--AGLAAELVFFQHDEVIVHCPVEEADAVVTVLEEASRLATRLA 536

Query: 953 LPKINLRVPLKVNI 966
             ++ +RVP    +
Sbjct: 537 FGEVPVRVPFTTAV 550


>gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 658

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 112/670 (16%), Positives = 222/670 (33%), Gaps = 121/670 (18%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           +++   + S +  + T +            +            + +  +D S   + D  
Sbjct: 13  IERNPHVKSLALDLETFS----AVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLA 68

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYG--ISMRGFEDIMLMSYVLD 497
               L  E+++ L    ++   +K  +N  +++  L    G  +   G+   M+ +  L 
Sbjct: 69  SGEQLPPEVVAAL----DDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLG 124

Query: 498 SGRSSHDIAS---IAQKWLSYTRKEILK--------SRKSSIPIDKISDSQVQEHAIENS 546
              S  D+ +   +A + L+   K+++K          +     D  + +  +++   + 
Sbjct: 125 LPLSLKDVGTVLGLAHQKLAEG-KDLIKYFSLPTKTGIRHQPSDDSAAWALFKQYNARDV 183

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            V   +   L    + +++   YE        V  ++   GI ID  L     A   K  
Sbjct: 184 EVETTIRRKLSHHPVPDEVWGQYE--------VDQRINDRGIHIDTRLATNAMACDKKYR 235

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
                   +L+G   N +SP QL   L  +                       ++     
Sbjct: 236 KRTLARAQELTGLD-NPASPLQLQSWLAEQG--------CKISSMAKEDVDSALDTATGS 286

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-- 724
           + + +   + LSK        + +      +         ++ TGR A     +QN+P  
Sbjct: 287 VREALELRQDLSKSSVAKYRKMADATCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRN 346

Query: 725 --------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
                                     +   L Q IR AFI     + I ADYS IE R+L
Sbjct: 347 YLPDLAQARSLVHYGDFDVLEMLYPSVPDTLSQLIRTAFIPSENHRFIVADYSAIEARVL 406

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFR 816
           A +A        F N  D++   A+ +FGV +EK   + ++R+  K    +  Y  S   
Sbjct: 407 AWLAGEETTLAAFTNGEDLYCATASAMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGA 466

Query: 817 L----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ---------------NG 857
           L    A ++ +  SE    +  +    P I            Q                G
Sbjct: 467 LKAMGALKMGLTASELQPIVDAWRAANPNIVAMWHDVDQTAIQAITTRSTVTLGNLSFTG 526

Query: 858 -----YVETIFGRRI------------------HYDEINSPKSSIRNINERAAINAPIQG 894
                ++    GRR+                  ++ +  + K           +   +Q 
Sbjct: 527 TKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYWGQGINRKWQQLETYGGKLVENIVQA 586

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +A D+   A+  +  +        ++++ IHDE+V +  ++  TT +  I   M +  LP
Sbjct: 587 TARDLLAEAITRIENA------GHEVVMHIHDEVVVDESKDSGTTVAD-ICTLMNQ--LP 637

Query: 955 KINLRVPLKV 964
              L +P+  
Sbjct: 638 TWALGLPIDA 647


>gi|271967935|ref|YP_003342131.1| DNA polymerase I - 3'-5' exonuclease-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511110|gb|ACZ89388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains-like
           protein [Streptosporangium roseum DSM 43021]
          Length = 531

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/544 (15%), Positives = 187/544 (34%), Gaps = 76/544 (13%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD--- 504
           ++   ++K  E      +  + +  +  L   G+      D+ L   +L      H    
Sbjct: 27  DLAEAVRK-LEAGRPRWVWADTREVQPSLLAAGVRPARCHDLALTEGLLLGYEGRHGEPR 85

Query: 505 --IASIAQKWLSYTRKEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKL 560
              A+ A+       ++    +     +  ++     V   A  +++ + ++     P+ 
Sbjct: 86  SAQAAHARLHGLPVPEDHHGPQARQATLFEEEPPPPDVGLVAEVHADQLRRIEATADPQR 145

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLE 610
                  +    +     +  +M   G+   +D+   +   +             L +L 
Sbjct: 146 -----FRLLVAAESAGALIAGEMGHDGMPWREDVHDTLLTGLLGPRPVHGMRPARLQALA 200

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           + + +  G  FN  SP+Q+                K+      +    +I   D+P +  
Sbjct: 201 DQVAEAFGTPFNPDSPQQIVKAF------------KSAGVPVASTRAHEIKKVDHPGVAP 248

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           +L ++++++I S +     +    R  R    Y +   ++GR A+       IP      
Sbjct: 249 LLAYKEMARIYSFHGWVWADQWV-RDHRFRPEYVVGGVVSGRWATSGGGALQIPK----- 302

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
             +R+  ++     L+ AD +Q+E R+LA +A    L +     +D+++ +A + FG   
Sbjct: 303 -VMRQVVVADEGWTLVVADAAQLEPRVLAAMAGDGGLARA-AGQIDLYQALA-QAFGG-- 357

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
                  R  AK    S +YG               +A   +     RFP  ++++E   
Sbjct: 358 ------ERDSAKIAMLSAMYGG-----------TSGDAPKLLAVMRQRFPRAYQFVEDAA 400

Query: 851 NFVRQNGYVETIFGRRIHYDEIN-----SPKSSIRNINERAAI--NAPIQGSAADITRRA 903
               +   V +  GR             S     R   +R     N  +Q +AA+     
Sbjct: 401 RSGEEGKLVRSWLGRTCPQPSAGWRELVSGPEGKRAARDRGRFTRNFVVQATAAEWALAL 460

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRV 960
           M  +   L D     +++   HDE++   P E        +  + E+A         +R 
Sbjct: 461 MAVLRGLLPD---PARLVFFQHDEVMVHCPAELAEEVVAAVGRAAEEATRLLFGPTPVRF 517

Query: 961 PLKV 964
           P++ 
Sbjct: 518 PMQA 521


>gi|184200105|ref|YP_001854312.1| putative DNA polymerase [Kocuria rhizophila DC2201]
 gi|183580335|dbj|BAG28806.1| putative DNA polymerase [Kocuria rhizophila DC2201]
          Length = 588

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 159/453 (35%), Gaps = 57/453 (12%)

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           V E   E +           P+  +E+LL +    +     V + M   GI  +  + +Q
Sbjct: 153 VTELIAELAAQTSACATARNPQ-RLERLLSL----ESQGALVAADMRHRGIPWNPAVHQQ 207

Query: 598 V----------SAEISKNLLSLEENIY-DLSGEKFNLSSPKQLGDILFT-KLKFPSGAKT 645
           +            E    +  L + +   L+    N  SP +L   L    +   +    
Sbjct: 208 ILEDMLGTRPAGEERPARMQELAQEVRTALAAPALNPDSPVELLKALRNAGVDVDTTRAF 267

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           K  +W       ++        +  +LE+++LS++ S       +       R H  Y +
Sbjct: 268 KLQEWTLVNGQPQEQRVAT---VTPVLEYKKLSRVFSATGWHWLDTWVHEG-RFHPEYVV 323

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
              +TGR A+       IP        IR A  + P   L+ AD +Q+E R+LA +A+  
Sbjct: 324 GGVVTGRWAARGGGALQIPK------YIRDAVRADPGHALVVADAAQLEPRVLAILARDD 377

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
            L +      D++  +A +      E      R HAK      +YG +            
Sbjct: 378 ALAEASR-GRDLYTAIAEQGQARGSE---LTERSHAKLALLGAMYGATSGAGGR------ 427

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD--------EINSPKS 877
                ++ +    FP    Y+E           V T  GR                  ++
Sbjct: 428 -----FMPQLTRMFPRAVGYVEHAARVGELGHQVCTYLGRWSPAPGPEWFEVQRATDTQA 482

Query: 878 SIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
             R   +      R + N  +QGSAA+     +  + + L    +  +++  +HDE++  
Sbjct: 483 GERRAAQASRSHGRFSRNFVVQGSAAEWALAWLGHIRQGLHGADVDAELVFFLHDEVMVH 542

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
             E+      QI+ H+  +A        VP++V
Sbjct: 543 CAEQHADRVQQIVEHAAGQAVHTVFG-TVPVEV 574


>gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255]
          Length = 652

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 227/625 (36%), Gaps = 127/625 (20%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG--FEDIMLMSY 494
           D      L KE++  L     +   +K   N  +++  + ++  I+++   +   M+ + 
Sbjct: 48  DLVNDEELPKEVIEAL----NDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKAL 103

Query: 495 VLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI---L 550
            L   G     + S+++       K+ +K  K+ I          + +     N+    +
Sbjct: 104 TLGLPG----SLDSVSKALKFNEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDM 159

Query: 551 QLWLLLRP--------KLIVEKLLHVYERLDKPM-IDVV-SQMEITGIQIDQDLLKQVSA 600
           + W   +         +  +   L  Y+  ++ + +  +  ++  TGI++D +L++    
Sbjct: 160 EKWNKFKEYCKQDVVVEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIE 219

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              +    L +    ++G   N +SP QL   L  K+ F   + TK           E +
Sbjct: 220 CDKRYTEKLTKEAIKITGLN-NPNSPAQLKKWLSDKVSFEITSLTK-------ESIPEIL 271

Query: 661 NCGDNPIIKNILEWRQL---SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
              D+  +   LE R+L   + IK   A  L    + R + +  FY   +  TGR A   
Sbjct: 272 KQVDDENVVRTLELRKLMSKTSIKKYEAMKLAKGNDNRVRGLLQFY--GANRTGRWAGRL 329

Query: 718 PNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISAD 749
             +QN+P                            +   L Q IR AFI     + I +D
Sbjct: 330 VQVQNLPQNHIEDLDLARNLLKEGDFDLIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSD 389

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFS 807
           +S IE R++A +A       VF +   I+   A+++F V IE +    ++R+  K    S
Sbjct: 390 FSAIEARVIAWLAGEKWRLDVFNSHGKIYEASASQMFKVPIESIKKGSELRQKGKLAELS 449

Query: 808 IIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR--------- 854
             YG S   L    A ++ +   E    +  + +  P I ++        +         
Sbjct: 450 NGYGGSVGALISMGAIKMGLKEEELQPIVTAWRNANPNITKFWWDVDKAAKKAIKDRTIV 509

Query: 855 --QNG----------YVETIFGRRIHY--DEI------------------NSPKSSIRNI 882
             Q+G          ++E    RR+ Y   +I                   S +    + 
Sbjct: 510 EIQHGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDT 569

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--EEITTA 940
                +   +Q +A D  R AM +V  +         +++ +HDELV +V +    +   
Sbjct: 570 YGPKLVENIVQATARDCLREAMFNVTDA------GYSIVMHVHDELVIDVDKKGGSLEEV 623

Query: 941 SQIIVHSMEKACLPKINLRVPLKVN 965
           + I+   +  A         PLK +
Sbjct: 624 NSIMGKEISWAKGL------PLKAD 642


>gi|37956877|gb|AAP34143.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 134/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 334 FNPSSRDHIQKKLQETGWIPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     ++       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 393 QKRIGQSSEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 452 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 565

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      EEI      I     +     
Sbjct: 624 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIEIAQEAMRWVGDH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 WNFRCLLDTEGKMGPNWA 701


>gi|322815448|gb|EFZ24101.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score =  168 bits (426), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 129/786 (16%), Positives = 270/786 (34%), Gaps = 132/786 (16%)

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
               E+ G  +          +T    ++  Q S   S  +     +     +S++  + 
Sbjct: 99  AEHEEDDGTNVSGCQQEQQQQRTVPTETIWVQDSPATSSSSRADAAVAATSNVSKHRGDY 158

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             +  ++     +  +Q L   G     +  +   A    P   A +    +  +   + 
Sbjct: 159 CRFKDVL--MVCEPLLQGLL--GPVGIDVEMNGTTAMLRDPNGFATALDSLEKASCDSLR 214

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEI---LSYLKKFFENEHFLKIGHNIK-YDKLVLHRYG- 480
                + +           L   +   L +L K        KI H  +   +L+    G 
Sbjct: 215 HFHDSIQLFFIIRGDSFYALDSSVCSPLVFLAKLLSAPAVTKIVHQAQPIYRLLFMFLGT 274

Query: 481 --ISMRGFEDIMLMSYVLD----------------------SGRSSHDIA-SIAQKWLSY 515
             + +R   DI + S V++                         S   I   + +     
Sbjct: 275 DRVEVRSLVDISVWSAVVERVCGPRPYTKGFADSQSLWQSLPENSRESIEVQLEKAKQER 334

Query: 516 TRKEILKSRKSSIPI-------DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL--- 565
             +  LK+ +S   +        ++   Q+     ++   +   +      +        
Sbjct: 335 WCEGTLKAEESGATMVLSSSSSGEMPLPQLLGRF-KSLATLYAYYEAYLQSVESSGATGN 393

Query: 566 ----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN-------IY 614
               L     L+  +  +   M   G+ +++++L  + A++ + + +L E        + 
Sbjct: 394 VFMSLFTVCSLETRVSFLCEVMSYHGMFVEKNMLDSMVADLEQQIKALIEKGNVALQAMA 453

Query: 615 DLSGEKFNLSSPKQ--LGDILFTKLKFP---SGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
             S E  ++ +     L   L ++   P   +    +    +  A   E+ +C D+ + +
Sbjct: 454 TASNESIDMETVDAWNLIKTLQSQFGGPWTFAKGNVEEQMQQLGAYLDEKQSCADSNVAR 513

Query: 670 NILEWRQLSKIKSTYADSLPN----------------------HINKRT--------QRV 699
             L   +  + K +  +                          H N             V
Sbjct: 514 IWLALHERREFKRSLMEGFTKGASMHARLIAIPEEMASTEGGGHSNPHHVEAQYRLFFSV 573

Query: 700 HTFYSLASTMTGRLASLEPNLQNI-----------------PIKTDLGQKIRRAFISPPT 742
           H  +S+    T RL    P LQ +                  I ++    +R  +  PP 
Sbjct: 574 HPKWSVHHATTSRLFCSRPCLQTVAKNPPISRTAPSSSPPVTIFSNPKWTLRHLYGPPPG 633

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHA 801
             L+S D++QIELR++AH++    L Q   +  D+   +A  +  +  +  V+P +R+  
Sbjct: 634 CTLVSFDFNQIELRVMAHLSGDPLLVQQLRDGSDVLAEMALRVMQLPRLTDVTPYLRQGT 693

Query: 802 KTINFSIIYGISPFRLATQLR-----------IPRSEAADYIKRYFHRFPGIHEYIEKTK 850
           K + + ++YG+ P  L  +LR            P   A  +++ +   +P +  +++ T+
Sbjct: 694 KVVVYGLLYGMGPESLDLRLRQLHKEITPFAEQPPLSARQFLRSFNQCYPAVQGFLKSTR 753

Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
                     T+ G R   D    P  + R      A+   IQG AA I   AM+ VH+ 
Sbjct: 754 LRAFHEKRCATLNGLR---DLSGEPDGNRRKQ---VAVALAIQGGAAVILHHAMVEVHEK 807

Query: 911 LEDH-----KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
             +        A  ++L +HDELV+ VP+  ++  +  I   +E+     ++L VPL V+
Sbjct: 808 RHELVPFLPAAAAALVLSVHDELVYAVPDGAVSFVAPKIKQILEQQAA-ALSLSVPLPVS 866

Query: 966 IKVSNN 971
           +K   +
Sbjct: 867 MKAGKS 872


>gi|325272840|ref|ZP_08139177.1| DNA polymerase [Pseudomonas sp. TJI-51]
 gi|324102045|gb|EGB99554.1| DNA polymerase [Pseudomonas sp. TJI-51]
          Length = 683

 Score =  168 bits (426), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 96/600 (16%), Positives = 195/600 (32%), Gaps = 131/600 (21%)

Query: 488 DIMLMSYVLDSGR--SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           D  L+   +  G+   SH + +   + L   + E     K+ +    +   +  E + E 
Sbjct: 104 DTGLLKKAVLPGKLFGSHSLEAWGYR-LRLMKGEYATEFKARMGDAYVDGMEWLEFSQEM 162

Query: 546 SNVILQLWLL---LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL-------L 595
            +  +Q  ++   L  +++ +        L+  +  +++  E  G   +++        L
Sbjct: 163 LDYCVQDVVVTSALWKRILGKNYSPRALALEHRVAWLMAAQERNGFHFNREKAAILYAKL 222

Query: 596 KQVSAEISKNLLSLEENIYDLSGE------------------------------------ 619
            Q   ++ + L    +  +  +GE                                    
Sbjct: 223 AQRRGDLERELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFTQVGWF 282

Query: 620 ---------------KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
                          +FN SS   + D L     +     TK G+ +   + + ++N   
Sbjct: 283 EKYTEGTRYTKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLN--- 339

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            P  K + E+  ++K  S  A+      + ++  R+H   +     TGR     PN+  +
Sbjct: 340 YPPCKLLTEYLLVAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGAATGRATHAYPNVAQV 399

Query: 724 PIK-TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE--NSLDIHRM 780
           P   +  G   R  F  P    L+ AD S +ELR LAH        +  +   + DIH  
Sbjct: 400 PASGSPYGIDCRELFTVPHGWLLVGADASGLELRCLAHFMARYDGGKYVDILLNGDIHWA 459

Query: 781 V--AAEIFGVNIEKVS---PQMRRHAKTINFSIIYGISPFRL----------ATQLRIP- 824
              A  I     +  +      R  AKT  ++ +YG    ++          A  L +  
Sbjct: 460 NVQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVGTIVYGMVAKAKALGLDY 519

Query: 825 -------------------RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
                              ++        +  + P + + ++  K   +           
Sbjct: 520 QHLLDVFFNGQDNPDEEALKAAGKKLKATFLRKTPALKKLVKAVKEAAK----------- 568

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM----- 920
           R H   ++     +++    AA+N  +QG+ A   ++ ++ +   L+   L         
Sbjct: 569 RGHLVGLDGRHVHVKSA--HAALNYLLQGAGALACKQWLVFLDDELQARGLKHGWDGDYA 626

Query: 921 -LLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVNIKVSNNWQEEN 976
               +HDE+            + I+  + E          N R PL    K+  NW E +
Sbjct: 627 FCAWVHDEVQIACRN---EAIAAIVREAAEACVAKAGEAFNFRCPLAGESKMGLNWAETH 683


>gi|226357424|ref|YP_002787163.1| 5-3 exonuclease [Deinococcus deserti VCD115]
 gi|226319414|gb|ACO47409.1| putative 5-3 exonuclease [Deinococcus deserti VCD115]
          Length = 244

 Score =  168 bits (426), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 114/249 (45%), Gaps = 16/249 (6%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
            L+D S+ I RA+Y          G   +A+     +L +++ + +    A H     D 
Sbjct: 4   LLIDSSNAICRAYYG-------RAGGQAHAV---PQVLCEVVWSLQHRFQAEHVIAALD- 52

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT-QAFGIPAIEIQGFEADDIIATYTY 126
               FR  +Y  YK +R   P  L   L         A  IPA+     EADD++ T   
Sbjct: 53  DTRNFRQSLYESYKGHRTPKPADLTHLLTQAAELMGAAGAIPAL-APNHEADDVMGTLAR 111

Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
            A        I+++D+DL   V+ T  +Y+      I +  V  ++G+ PE++   ++L 
Sbjct: 112 RAP---GRAVIVTSDRDLFSAVTETVQVYEPRSRTVITVADVQARFGVSPERIPLFKSLC 168

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           GDS DNIPG+ G+G K A++L  + G ++ I    S   ++ ++  +       RL  +L
Sbjct: 169 GDSSDNIPGVRGLGEKAASVLAAQCGTVDEIFERVSTFDRRYQKALLAADPMEIRLFHQL 228

Query: 247 VMLRTDVPI 255
             +RTD P+
Sbjct: 229 ATVRTDAPV 237


>gi|294948800|ref|XP_002785901.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
 gi|239900009|gb|EER17697.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
          Length = 1712

 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 69/263 (26%), Positives = 121/263 (46%), Gaps = 27/263 (10%)

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----------SLDIHRMV 781
            +R AF++P  + L+S DY Q+E R+LAH      L  +F             + DI   +
Sbjct: 1452 LRDAFVAPKGRLLLSVDYCQLEARLLAHFCGDQRLITLFNQPDGDYNSTGSPTYDIFVHI 1511

Query: 782  AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            A+      + +VS   R   K + + +IYG+    L+ ++ +  +E    + ++ + FP 
Sbjct: 1512 ASTWLSKALNEVSDMERNGIKQLVYGVIYGMGARSLSREMGVTLAEGEALMSKFDNEFPR 1571

Query: 842  IHEYIEKTKNFV-RQNGYVETIFGRRIHYDEINSPK-SSIRNINERAAINAPIQGSAADI 899
            + E+     +   R+   V +I GR  H   +     +  R   +R A+N   Q SAADI
Sbjct: 1572 VREWTRSVIHGATREGASVPSILGRPRHLAGLGGGGTAQERARAQRQAVNTACQASAADI 1631

Query: 900  TRRAMISVHKSL-----EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
             + A + V + L     E+ +   ++LLQIHDEL+ EV E+ I      +V +     + 
Sbjct: 1632 MKAATLEVARRLAAMRDENGRPPAEILLQIHDELLLEVDEDRIEPVVDAVVDA----MVT 1687

Query: 955  KINLRVPLKVNIK-VSNNWQEEN 976
             + L V L+V    +     E++
Sbjct: 1688 AVPLTVRLQVKWGRIG----EKH 1706



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 115/308 (37%), Gaps = 42/308 (13%)

Query: 442  KNTLTKEILSYLKKFFENEH--FLKIGHNIKYDKLVLHRYGISMRG-------FEDIMLM 492
            + +L  E +  L++  E      L I  +      +L R    MR          D  LM
Sbjct: 1016 EYSLLDESMEQLRRVVEASAQYTLIITESAADFWRLLKRKHPEMRCSACSSTVVVDPHLM 1075

Query: 493  SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
            +++ +   S+             + ++ +K         ++S     +  ++    I  L
Sbjct: 1076 AWLRNPEDST-----------GPSLEKYVK---------QLSAPHYLDRDLKQCLAIYAL 1115

Query: 553  WLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD-LLKQVSAEISKNLLSLE 610
               L   L+    LL +   ++ P   ++  ME+TG+ +       +        + +LE
Sbjct: 1116 CTELGRGLVQHSGLLELLVTVEAPTAALLVDMEVTGLMVTPSYWFHRQGKHARYKMQALE 1175

Query: 611  ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG--------AKTKTGQWKTTAQDLEQINC 662
              + +  G    L + + +   +F  L  P           K     +    + L Q++ 
Sbjct: 1176 VAVREAVGRYVALGNAEDVSKAIFDDLNVPVPEGLRPRKVKKNGHKVYAVDQKTLMQLDP 1235

Query: 663  GD--NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
             D  + +   I+E R+LS + S +A  +  H+     RVHT ++   T TGRL S +PNL
Sbjct: 1236 PDRCHDLFDWIMEHRRLSHVLSKHA-VIDRHVLHDGLRVHTTFTQTGTATGRLKSTDPNL 1294

Query: 721  QNIPIKTD 728
              +    +
Sbjct: 1295 LTVENAFE 1302


>gi|60117346|gb|AAX14438.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 193

 Score =  167 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 84/188 (44%), Positives = 122/188 (64%), Gaps = 1/188 (0%)

Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           + V+  ME  GI ++   L+++S +  + +  LE+ IY+L+GE+FN++SPKQL D+LF K
Sbjct: 1   MKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNK 60

Query: 637 LKFPSGAKTKTGQWKTTA-QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           +      K+K     +T  + LE +      I   IL WR LSK+K TY D+L   ++  
Sbjct: 61  MGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPL 120

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
             R+HT +S  +T TGRL+S  PNLQNIPI+++ G  IR+AFI+P   K+ISADYSQIEL
Sbjct: 121 DGRIHTSFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIEL 180

Query: 756 RILAHIAK 763
           R+LAH+A 
Sbjct: 181 RLLAHVAN 188


>gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 662

 Score =  167 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 126/665 (18%), Positives = 227/665 (34%), Gaps = 131/665 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T              +    +       +    +D       D     ++ 
Sbjct: 1   MKTLSIDIET----YSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRGFED----IMLMSYVLDS 498
           +EIL  L     ++   K   N  ++++ L R+    G S+  F D        +  L+ 
Sbjct: 57  EEILDALT----DDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNP 112

Query: 499 GRSSHDIASIAQKWLSYTRKEIL----------KSRKSSIPIDKISDSQVQEHAIENSNV 548
                 +   A   L  + + +           K  +  I    I   + + +     N+
Sbjct: 113 AGWKCSMVWSAYLGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCIPCKETKANGGRTRNL 172

Query: 549 ---ILQLWLLLRP--KLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLL 595
               L  W L +   K  VE  + + +RL K  +         +  ++   GI ID +L 
Sbjct: 173 PQHALDKWNLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELA 232

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           KQ  A  +K+  SL   + + +G + N +S  Q+ D L        G KT +   K    
Sbjct: 233 KQAVALDAKSRESLMAALKERTGLE-NPNSVIQMLDWLEQH-----GLKTDSLGKKN--- 283

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +     P+   +L  ++L+K       ++     K  +    F    +  TGR A 
Sbjct: 284 VQELLKTAQEPLRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAG 343

Query: 716 LEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLIS 747
               LQN+P                            I   L Q IR AF+     K + 
Sbjct: 344 RHIQLQNLPQNHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVV 403

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTIN 805
           +D+S IE R+++ +A      + F    DI+   A+++FGV + K  ++  +R+  K   
Sbjct: 404 SDFSAIEARVISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAE 463

Query: 806 FSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG---- 857
            +  YG S   L    A  + IP  E  + ++ +    P I ++  +    V+       
Sbjct: 464 LACGYGGSVGALKAMGALDMGIPEEELGNLVQSWRSANPHIVDFWWQVDGAVKTTIKQRI 523

Query: 858 ----------------YVETIFGRRIHY--DEIN----------------SPKSSIRNIN 883
                           ++E   GRR+ Y    I                 + K       
Sbjct: 524 PVWVNNIRFFCQSGMLFIELPSGRRLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESY 583

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
               +   +QG + DI   AM ++            ++  +HDEL+ E P++   T+   
Sbjct: 584 GPKFVENIVQGISRDILCYAMQTLR--------CCAIVGHVHDELIIECPKD---TSVDA 632

Query: 944 IVHSM 948
           I   M
Sbjct: 633 ICEEM 637


>gi|291165127|gb|ADD81154.1| gp49 [Rhodococcus phage ReqiPine5]
          Length = 600

 Score =  167 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 105/594 (17%), Positives = 208/594 (35%), Gaps = 83/594 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
            +    G  +  I T  +D F  + I  +    D +                        
Sbjct: 29  ARTYAGGPVAADIETKGIDIFTIRCITFSWHGSDGRT------------------HGILL 70

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI----SMRGFEDIMLMSYVLD 497
                 E L+  K+  +    L + HN  +D + L  +G+     +    D +++S +  
Sbjct: 71  DMGRRPEDLAEAKRIAQRAEHL-VFHNSPFDVVPLVHFGVMGREEVFRVWDTIVLSRMAF 129

Query: 498 SG-RSSHDIASIAQKW----------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
                   + ++A K               +   LKS+        I     +  AI ++
Sbjct: 130 PDVMVPKKLEAMAVKMRVSDELPDGLKMMIKASGLKSKDGWYAHGDIDRPAYRHGAIADT 189

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERL--------------DKPMIDVVSQMEITGIQIDQ 592
            V L+L  +L   +  +   H +                 +  +  V+      GI++D 
Sbjct: 190 VVTLRLLPVLIDAIHRKLTDHPFTDRGLQTTDEAQALVDREMLVNRVMLWRSARGIRVDL 249

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWK 651
           D +      ++  +   E    +L     +  +  QL   L      P    +T TG+  
Sbjct: 250 DYMHTYRDSVADKVARAE---LELKNYGVDPGNGAQLVAKLDEVGGLPENWPRTATGKLA 306

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           +    +E++  GD+P+      +   +KI   Y D++ +      +   +   L ++ TG
Sbjct: 307 SNKDAMEKL--GDHPLALAHRIYADETKI-GQYLDAVASRAEVTGRCHPSVAILGASATG 363

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R +  +P LQ             R  +    + L+S D+S IE  ++A++A        F
Sbjct: 364 RTSYSDPPLQQFSAD-------ARPVLVDDGQGLMSVDWSAIEPVVVANMAGDQEFLAPF 416

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
               D++           I++ +   R+ AK +    +YG    ++A  L+    +A   
Sbjct: 417 VAGADLYE---------PIQRAAGIDRKRAKVVLLGTLYGEGKGKMAADLKCSYEQAVQI 467

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            +  F   P +  ++E  K+   Q G + T  GR +   + N        +    A N  
Sbjct: 468 QRGMFSAMPKVERFLETVKSVAAQFGIIVTADGRILDVPKFNG------EVAAYKATNYI 521

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            QG+A  +    ++ +H    D  L+ ++ L +HDE V  V  +       I+ 
Sbjct: 522 TQGTAYSVAADTIVRLH----DAGLSDEIHLFMHDEFV--VSRDAAPDVEAIMQ 569


>gi|194100384|ref|YP_002003958.1| gp5 [Enterobacteria phage 13a]
 gi|193201431|gb|ACF15908.1| gp5 [Enterobacteria phage 13a]
          Length = 704

 Score =  167 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 133/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 452 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 565

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      EEI            +     
Sbjct: 624 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 WNFRCLLDTEGKMGPNWA 701


>gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
 gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
          Length = 643

 Score =  167 bits (424), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 113/601 (18%), Positives = 202/601 (33%), Gaps = 124/601 (20%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-G--ISMRGFEDIMLMS- 493
           D      + +EILS L     +E+  K   N  ++++ L R+ G  +  +G+   M+ S 
Sbjct: 48  DLANGEIIPEEILSAL----SDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSA 103

Query: 494 YV--------------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ-- 537
           Y+              LD  + +   A I  ++ S   K    +      +      +  
Sbjct: 104 YLGLPLSLEKVGEVLKLDKQKMNEGKALI--RYFSTPCKPTKTNGMRIRNLSHHDLEKWS 161

Query: 538 -VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             +E+   +    + +   L    +       Y         +   +   GI ID+ L+ 
Sbjct: 162 TFKEYNQRDVETEMAIKKKLSAFPMSHSEWENYW--------IDQNINDRGILIDEVLVD 213

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK-LKFPSGAKTKTGQWKTTAQ 655
                         +   +L+G + N +SP QL + L  K L+  S AK           
Sbjct: 214 SAIKFDGILREENMDRAIELTGLE-NPNSPLQLKEWLNKKGLEIDSLAK---------KD 263

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
               +   +  I + +   ++LSK      D++ N   K  +         +  TGR + 
Sbjct: 264 VESALKNTEGDIKEVLELRQELSKSSVRKYDAMKNVKGKDNRARGLIQFYGANRTGRYSG 323

Query: 716 LEPNLQNIPIK----------------------------TDLGQKIRRAFISPPTKKLIS 747
               +QN+                                 L Q IR AFI+    + I 
Sbjct: 324 RLIQVQNLRRNNLKDLDLARSLVKNRDYETMEILYESPSDILSQLIRTAFIAKEGTRFII 383

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTIN 805
           +D+S IE R+LA +A    +   FEN  DI+   A+ +FGV +EK  V+  +R+  K   
Sbjct: 384 SDFSAIEARVLAWLAGEQWVLDAFENGEDIYCRTASRMFGVPVEKHGVNGHLRQKGKIAT 443

Query: 806 FSIIYGISPFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR------- 854
            +  Y  +   L       + +   E    +  +    P I        + V+       
Sbjct: 444 LACGYQGALGALKAMGGIEMGLSEDELQSIVDSWREANPNIVSLWWDIDSVVKRVVKTRT 503

Query: 855 -----------QNG--YVETIFGRRIHYDE-----------------INSPKSSIR-NIN 883
                      + G  ++E    RR+ Y +                 I       +    
Sbjct: 504 KEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGESIVYEGIVVGNKWDKIESY 563

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
               +   +Q  A DI   AM+ + K          +++ IHDE+V E     I   +QI
Sbjct: 564 GGKFVENIVQAIARDILAEAMMRLEKK------GFNIVMHIHDEVVIESDSSSIEEINQI 617

Query: 944 I 944
           +
Sbjct: 618 M 618


>gi|329928821|ref|ZP_08282660.1| 5'-3' exonuclease, SAM domain protein [Paenibacillus sp. HGF5]
 gi|328937464|gb|EGG33885.1| 5'-3' exonuclease, SAM domain protein [Paenibacillus sp. HGF5]
          Length = 193

 Score =  167 bits (424), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 93/186 (50%), Gaps = 7/186 (3%)

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE- 161
           +  GIP + + G+EADD I T       +   V I+S D DL+QLV+ +T +    K   
Sbjct: 1   ECLGIPNLGVVGYEADDCIGTLARRF-GDSMNVMILSGDHDLLQLVNDSTSVIIMKKGHG 59

Query: 162 ---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
                  E +  + G+ P +++ ++ L GD+ DN PG+ GIG KTA  L+QEY ++E IL
Sbjct: 60  NYMHYTPETLYAEKGLSPRQVIDVKGLMGDTSDNYPGVRGIGEKTAVKLIQEYESVEGIL 119

Query: 219 INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
            N   +  K  R  I    E   LSR L  +  +VP+   L  L     +  R ++ L+ 
Sbjct: 120 ANLDSL-TKGVRTKIEADLEMLHLSRALAEIHCEVPMECEL-DLCRLSVDHERALTKLEE 177

Query: 279 LEFTKL 284
           LE   L
Sbjct: 178 LEMKSL 183


>gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
          Length = 653

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 102/629 (16%), Positives = 204/629 (32%), Gaps = 134/629 (21%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-------------RYGISMR 484
           D    + L +++LS L     +   +K   N  ++++ L              R  ++  
Sbjct: 48  DLANGHQLPEKVLSALV----DPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPA 103

Query: 485 GFEDIMLMS-YV-----LD--------SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
            +   M+ S Y+     LD          R       + +++ +     +        P 
Sbjct: 104 QWRCTMVWSAYLGLPMSLDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPP 163

Query: 531 DKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
               D   Q   +   +  V L +   L    +       Y         +   +  TGI
Sbjct: 164 ASDPDGWEQFISYNRRDVEVELAIHDRLADFPLPASEWDTY--------ALDQNVNDTGI 215

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D+ L+    A   ++  +      +L+G + N +SP QL D L      P  + TK  
Sbjct: 216 RLDRVLVDHAVACDRQHRATTLARAQELTGLE-NPNSPIQLKDWLAAH-GAPLQSLTK-- 271

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
                 +    ++     + + +L   +L+K      +++ +   +  +         + 
Sbjct: 272 -----DEVAAALDTATGQVREVLLLRGELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAG 326

Query: 709 MTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAFISP 740
            TGR A     +QN+P                            +   L Q IR AFI  
Sbjct: 327 RTGRFAGRLVQVQNLPRNYLPDLAEARSLVRTGDFEAVELLYDSVPDTLSQLIRTAFIPA 386

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMR 798
              + + AD+S IE R++A +A  T   + F +  D++   A+ +FGV ++K   + ++R
Sbjct: 387 DGHRFVVADFSAIEARVIAWLAGETTTLEAFRDGKDLYCETASRMFGVPVDKHGANAELR 446

Query: 799 RHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           +  K    +  Y      L    A ++ +  SE    +  +    P + +          
Sbjct: 447 QKGKIAVLACGYQGGVGALKAMGALRMGLAESELQPLVDAWRAANPSVVQLWADINAAAI 506

Query: 855 QN--------------------GYVETIFGRRIHY------------------DEINSPK 876
           +                      ++    GRR+ Y                        K
Sbjct: 507 ETISTRQPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLGENRFGGTSITHEGITTGRK 566

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
                          +Q  A D+   AM  V ++        ++++ +HDE+V E     
Sbjct: 567 WGQLETYGGKLTENIVQAVARDLLTYAMHQVAEA------GHRIVMHVHDEIVVETATAT 620

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +    ++    M  A      L  PL+ +
Sbjct: 621 VDEICKL----MSTAPDWAAGL--PLEAD 643


>gi|116666722|pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
 gi|116666726|pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
          Length = 704

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 133/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 452 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 565

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      EEI            +     
Sbjct: 624 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 WNFRCLLDTEGKMGPNWA 701


>gi|330859587|emb|CBX69927.1| uncharacterized exonuclease xni [Yersinia enterocolitica W22703]
          Length = 215

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 16/192 (8%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL +VD  + I R  +A            VNA     + L +L+ +S+     +H   +F
Sbjct: 4   HLLIVDALNLIRRI-HAVQDSPS------VNACQ---HALQQLISHSQ----PTHAVAVF 49

Query: 66  DY--PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           D    + ++R++  PDYKA R  +P+ L  ++PL+R A  + G+      G EADD+ AT
Sbjct: 50  DEDDRSDSWRHQSLPDYKAGRSPMPDNLQQEMPLIREAFNSLGVNCWSSPGNEADDLAAT 109

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183
                 + G  VTI+STDK   QL++P   + D  ++  +D+  V +++G+ P ++    
Sbjct: 110 LAIKIGEAGHQVTIVSTDKGYCQLLAPNVQIRDYFQKRWLDMPFVKQEFGVLPHQLPDYW 169

Query: 184 ALTGDSIDNIPG 195
            L G S     G
Sbjct: 170 GLAGISSSKNSG 181


>gi|194100278|ref|YP_002003476.1| gp5 [Enterobacteria phage BA14]
 gi|193201273|gb|ACF15753.1| gp5 [Enterobacteria phage BA14]
          Length = 704

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 139/382 (36%), Gaps = 37/382 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           FN +S   +  +L TK  +     T +G  K   + LE +   D      I+ I E+  +
Sbjct: 334 FNPASRDHITRVL-TKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+        I +   R+H   +    +TGR     PN+  +P I+   G+  
Sbjct: 393 QKRIGQVAEGDNGWLRMIGEDG-RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPC 451

Query: 734 RRAFIS--------PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +        P     +  D S +ELR L H          ++    +  ++  +I
Sbjct: 452 RAAFGAEHNMKDGKPDPWIQVGVDASGLELRCLGHFMYR------YDEGEYVETILTGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +     +    IK +  + P I   
Sbjct: 506 HTKNQMAAGLPTRDNAKTFIYGFLYGAGAAKIGQIVGGTAEDGKRLIKNFLEQTPAIAAL 565

Query: 846 IEKTK-NFVRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E      V+ + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 REAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEE-ITTASQIIVHSMEKACLP 954
             ++   + L +  L          +  +HDE+      +E      ++   +M      
Sbjct: 624 LWIVETERLLLEAGLKHGWDGDFAYMAWVHDEIQVAARTQEIADKIVELAQQAMRNVG-D 682

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             N R  L    K   NW++ +
Sbjct: 683 HFNFRCQLDTEGKTGANWKDCH 704


>gi|9627454|ref|NP_041982.1| DNA polymerase [Enterobacteria phage T7]
 gi|118856|sp|P00581|DPOL_BPT7 RecName: Full=DNA polymerase; AltName: Full=T7 DNA polymerase
 gi|15591|emb|CAA24412.1| unnamed protein product [Enterobacteria phage T7]
 gi|37956666|gb|AAP33936.1| gene 5 [Enterobacteria phage T7]
 gi|265524990|gb|ACY75853.1| DNA polymerase [Enterobacteria phage T7]
          Length = 704

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 133/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 452 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 565

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      EEI            +     
Sbjct: 624 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 WNFRCLLDTEGKMGPNWA 701


>gi|261884408|ref|ZP_06008447.1| DNA polymerase I [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 179

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 5/176 (2%)

Query: 11  DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV 70
           D   F +R +YA   L +   G P   + GF N ++ L    +++  + +     D    
Sbjct: 8   DTFGFFFRLYYAMIGL-KSQSGKPSGMVHGFANFIYNL----KQDFPSDYIVFALDSGGK 62

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           TFR++I P+YKANR   P+ L  QLP+     +  G+ ++ ++G+EADDIIA++   ++ 
Sbjct: 63  TFRSQIDPNYKANRVSPPQELKDQLPVCIDMIEKMGLCSLRVEGYEADDIIASFIKNSKD 122

Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186
           +   + I++ DKDL QL+     ++   K+E  + +   +K+G+ PE++    AL 
Sbjct: 123 QDLEIRIVTHDKDLYQLIDDRVSIFSPAKKELYNRDGCYEKYGVYPEQIRDFLALM 178


>gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
 gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
          Length = 645

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 114/621 (18%), Positives = 211/621 (33%), Gaps = 120/621 (19%)

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-G--ISMRGFEDI 489
           VH    + G+    + I +       +    K   N   +++ L  + G  +   G+   
Sbjct: 47  VHVVDLACGEQIPEEAISA-----LSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCT 101

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE---NS 546
           M+ S  L        + S A   L   ++++ +  K  I    +     + +        
Sbjct: 102 MVWSATLG---LPLSLES-AGAALGLEKQKLTE-GKDLIRYFCVPCRPTKANGGRTRNRP 156

Query: 547 NVILQLWLLLRP--KLIVEKLLHVYERLDKPMIDVVSQMEIT--------GIQIDQDLLK 596
               + W   +      VE  + + +RL    +      E          GI +D +L++
Sbjct: 157 EHAPEKWERFKAYNLRDVETEMQIQKRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVR 216

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q  A  +++   L   + +L+  + N +S +Q+   L            K          
Sbjct: 217 QAIAIDTRSRERLTAAMRELTELE-NPNSAQQMKQWLADHGLETDTLGKK--------AV 267

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            E +     P+ + +   +QL+K       ++ N +   ++    F    +  TGR +  
Sbjct: 268 AELVKTAPEPLREVLSLRQQLAKSSVKKYTAMENAVCADSRAHGMFQFYGANRTGRFSGR 327

Query: 717 EPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISA 748
              LQN+P                            I   L Q IR A++    +K I A
Sbjct: 328 LIQLQNLPQNHMGDLAEARALVRSGNYEALSVLYEDIPDTLSQLIRTAYVPQDGRKFIVA 387

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINF 806
           D+S IE R++A  A      +VFE+  DI+   A+++F V +EK  V+  +R+  K    
Sbjct: 388 DFSAIEARVIAWFAGERWRLKVFEDGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAEL 447

Query: 807 SIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEK----TKNFVRQNGY 858
           ++ YG S   L    A ++ +   E    +  +    P I ++        K+ +RQ   
Sbjct: 448 ALGYGGSVGALKSMGALEMGLAEEELQPLVDAWRGSNPMITQFWWDVDRAVKDCIRQRIP 507

Query: 859 VETI---FGRRIHYDEINSPKSSIRNI-------------------------NERAAINA 890
            ET    F  R     IN P                                 ER     
Sbjct: 508 TETHGLRFDYRSAMLFINLPSGRRLAYVKPRIGENQFGGESVTYMGVSGTKKWERLESYG 567

Query: 891 P------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           P      +QG+A DI   AM ++            ++  +HDE++ E        +   +
Sbjct: 568 PKFVENIVQGTARDILCYAMQTLKN--------CSIVAHVHDEIIIEADR---RMSVAAV 616

Query: 945 VHSMEKACLPKINLRVPLKVN 965
              M +       L+  L+ +
Sbjct: 617 CEQMGRTPPWAKGLK--LRAD 635


>gi|2982125|pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
           Nucleoside Triphosphate, And Its Processivity Factor
           Thioredoxin
 gi|50513551|pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE AND
           DDATP
 gi|50513555|pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513559|pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template
 gi|50513563|pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513565|pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513571|pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513575|pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template And An Incoming Nucleotide
 gi|52695798|pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Ddctp At The Insertion Site
 gi|52695802|pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
           The Templating Strand
 gi|52695806|pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Damp At The Elongation Site
 gi|52695810|pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Dcmp At The Elongation Site
 gi|56553842|pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
           Insertion Site.
 gi|56554410|pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
           Acetylaminofluorene-Adducted Dna
 gi|56554414|pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Ctp As The Incoming
           Nucleotide.
 gi|56554418|pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Atp As The Incoming
           Nucleotide
          Length = 698

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 133/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 328 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 386

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 387 QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQC 445

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 446 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 499

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 500 HTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 559

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 560 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 617

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      EEI            +     
Sbjct: 618 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDH 677

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 678 WNFRCLLDTEGKMGPNWA 695



 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 77/232 (33%), Gaps = 30/232 (12%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           +DA  ++     +              T    L ++       +N +   +LS L     
Sbjct: 43  LDALEAEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRL----- 97

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
                 I  N+K   + L R G  + G     L ++    G    +     ++ L    +
Sbjct: 98  ------IHSNLKDTDMGLLRSG-KLPG----ALEAWGYRLGEMKGEYKDDFKRMLEEQGE 146

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNV--ILQLWLLLRPKLI----------VEKLL 566
           E +   +     +++ D  VQ+  +  + +  +L       P++            E L 
Sbjct: 147 EYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLE 206

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
            V   ++     ++++ E  G   D   ++++  E++     L   + +  G
Sbjct: 207 AV--DIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFG 256


>gi|83753886|pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
          Length = 698

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 132/378 (34%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 328 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 386

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 387 QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQC 445

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 446 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 499

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG     +   +   +    +  K++    P I   
Sbjct: 500 HTKNQIAAELPTRDNAKTFIYGFLYGAGDEAIGQIVGAGKERGKELKKKFLENTPAIAAL 559

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 560 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 617

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      EEI            +     
Sbjct: 618 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDH 677

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 678 WNFRCLLDTEGKMGPNWA 695



 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 77/232 (33%), Gaps = 30/232 (12%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           +DA  ++     +              T    L ++       +N +   +LS L     
Sbjct: 43  LDALEAEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRL----- 97

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
                 I  N+K   + L R G  + G     L ++    G    +     ++ L    +
Sbjct: 98  ------IHSNLKDTDMGLLRSG-KLPG----ALEAWGYRLGEMKGEYKDDFKRMLEEQGE 146

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNV--ILQLWLLLRPKLI----------VEKLL 566
           E +   +     +++ D  VQ+  +  + +  +L       P++            E L 
Sbjct: 147 EYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLE 206

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
            V   ++     ++++ E  G   D   ++++  E++     L   + +  G
Sbjct: 207 AV--DIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFG 256


>gi|255326718|ref|ZP_05367794.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
 gi|255295935|gb|EET75276.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
          Length = 668

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/443 (20%), Positives = 156/443 (35%), Gaps = 61/443 (13%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           L +    +     V +++   GI  +     +   E+           + +  L E I  
Sbjct: 251 LRLLAAAESAGALVAAEIGYYGIPFNVQAHHEHLCELLGPRPVPGERPQKMQELAEQIQR 310

Query: 616 -LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
            L     N  SP+ L   L +     S   T++ + K+ A  +         +I  IL +
Sbjct: 311 MLFMPSLNPDSPQDLLRALQSAG--VSVKSTRSWELKSWADAIPAQRQKRWAMIDPILRY 368

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           ++L +I +    +  +              +    TGR  +       +P       +IR
Sbjct: 369 KKLYRIWTANGWTWADTWVSEGA-FRPHLEVGGAATGRWGASGGGALQLPA------EIR 421

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA--AEIFGVNIEK 792
           +A  +P  + L   D SQIE RILA +++   L        D++  +A  A + GV + +
Sbjct: 422 QAVQAPEGQVLTVTDGSQIEPRILAALSRDEALASAGR-GADLYAGIAELARMKGVGLTE 480

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
                R HAK    +I+YG     +              +      FP   ++ E+    
Sbjct: 481 -----RSHAKVGMLAIMYGGRSGEIG-----------ALLPHVAALFPQAMDFTERAARI 524

Query: 853 VRQNGYVETIFGRR--------------IHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
               G V T  GR                      S   S    + R   N  +QG+AA+
Sbjct: 525 GEAGGQVTTFLGRTSPPVDERFREIVADRSSPAAESRAVSSARAHGRMTRNFIVQGTAAE 584

Query: 899 ITRRAMISVHKSLEDHK-----LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
                M +V   L   +     + T+++  +HDEL+   PE E     +I+     +A  
Sbjct: 585 WALCWMGAVRSRLLSERIFGMPMRTRIVYFLHDELLLCGPELEADRVERIVREGAAEAAR 644

Query: 954 PKINLRVPLK--VNIKVSNNWQE 974
                RVP+   V++    N+ E
Sbjct: 645 LLFG-RVPVDFPVSVARVRNYAE 666


>gi|326536127|ref|YP_004300559.1| gp5 [Enterobacteria phage 285P]
 gi|256861516|gb|ACV32472.1| gp5 [Enterobacteria phage 285P]
          Length = 704

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 138/382 (36%), Gaps = 37/382 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           FN +S   +  +L TK  +     T +G  K   + LE +   D      I+ I E+  +
Sbjct: 334 FNPASRDHITRVL-TKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+        I     R+H   +    +TGR     PN+  +P I+   G+  
Sbjct: 393 QKRIGQVAEGDNGWLRMIGDDG-RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPC 451

Query: 734 RRAFIS--------PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +        P     +  D S +ELR L H          ++    +  ++  +I
Sbjct: 452 RAAFGAEHNMKDGKPDPWIQVGVDASGLELRCLGHFMYR------YDEGEYVETILTGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +     +    IK +  + P I   
Sbjct: 506 HTKNQLAAGLPTRDNAKTFIYGFLYGAGAAKIGQIVGGTAEDGKRLIKNFLEQTPAIAAL 565

Query: 846 IEKTK-NFVRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E      V+ + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 REAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEE-ITTASQIIVHSMEKACLP 954
             ++   + L +  L          +  +HDE+      +E      ++   +M      
Sbjct: 624 LWIVETERLLLEAGLKHGWDGDFAYMAWVHDEIQVAARTQEIADKIVELAQQAMRNVG-D 682

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             N R  L    K   NW++ +
Sbjct: 683 HFNFRCQLDTEGKTGANWKDCH 704


>gi|290958457|ref|YP_003489639.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260647983|emb|CBG71088.1| putative DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 571

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 153/449 (34%), Gaps = 89/449 (19%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ ++V  E+           + L  L E + +
Sbjct: 156 MRLLTAAESAGMLVAAEMNRAGLPWRPDVHREVLRELLGERYAGGGEPRRLAELAEEVSN 215

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +                 +    +I   D+P +K +LE++
Sbjct: 216 AFGRRVRPDLPADVVKA-FARAGVRVK-----------STRRWEIESVDHPAVKPLLEYK 263

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I   +    L + +  R  R    +    T+TGR  +       IP        IR
Sbjct: 264 KLYRIWVAHGWSWLQDWV--RDGRFRPEFLAHGTVTGRWVTNGGGALQIPK------VIR 315

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++ P  +L+ AD  Q+E R+LA I++   L  V     D+++ V+   F  +     
Sbjct: 316 RACVADPGWRLVVADADQMEPRVLAAISRDPGLMDVAGRPGDLYQAVSDRAFSGD----- 370

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG +       L                RFP    Y++       
Sbjct: 371 ---REQAKLAVLGAVYGQTSGDGLKNL-----------AALRRRFPHAVRYVDDAARAGE 416

Query: 855 QNGYVETIFGRRIH----------------------------------YDEINSPKSSIR 880
           +   V T  GR                                      + +    S+  
Sbjct: 417 EGRLVRTWLGRTCPPAAGDPDAAGEEAGIPQADDGPGAPEQGRGQGQETEWVPGYASTDS 476

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               R A N  +QGSAAD T   + ++ ++     +A +++   HDE++   P  E    
Sbjct: 477 RARGRFARNFVVQGSAADWTLLLLAALRRT--LDGMAAELVFFQHDEVIVHCPAAETDAV 534

Query: 941 SQIIVHSME---KACLPKINLRVPLKVNI 966
              I  + E   +    +  +R P    +
Sbjct: 535 VTAIREASELSGRLAFGQTPVRFPFTTAV 563


>gi|32141203|ref|NP_733604.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|24413788|emb|CAD55317.1| putative DNA polymerase I [Streptomyces coelicolor A3(2)]
          Length = 563

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 163/477 (34%), Gaps = 87/477 (18%)

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           + + Q     + +   +         +  +   L +    +   + V ++M   G+    
Sbjct: 123 LFEPQAVHLPLSDLLAVYAEQQRRHDRSALPDRLRLLTAAESAGMLVAAEMNRAGLPWRA 182

Query: 593 DLLKQVSAEI----------SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           D+ ++V  ++           + L  L E +    G +     P  +    F +     G
Sbjct: 183 DVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRVRPDLPADVVKA-FGQAGVKVG 241

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD-SLPNHINKRTQRVHT 701
                      +    ++   D+P +K ++E+++L +I   +    L + +  R  R   
Sbjct: 242 -----------STRRWELESLDHPAVKPLIEYKKLYRIWVAHGWSWLQDWV--RDGRFRP 288

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +    T+TGR  +       IP        IRRA ++ P  +L+ AD  Q+E R+LA I
Sbjct: 289 EFLAGGTVTGRWVTNGGGGLQIPK------VIRRAVVADPGWRLVVADADQMEPRVLAAI 342

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L +V     D+++ V+   F  +        R  AK      +YG +       L
Sbjct: 343 SRDPGLMEVAGRETDLYQSVSDRAFSGD--------RDQAKLAVLGAVYGQTSGDGLKNL 394

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH------------- 868
                           RFP    Y++       +   V T  GR                
Sbjct: 395 -----------AALRRRFPRAVAYVDDAARAGEEGRLVRTWLGRTCPPAAGAADGTEEAG 443

Query: 869 ----------------YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
                                S  +  R    R A N  +QGSAAD     + ++ ++  
Sbjct: 444 LPQDEPAGAGDRAQEWVPGYASTNARARG---RFARNFVVQGSAADWALLLLAALRQTCA 500

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNI 966
           D  +A +++   HDE++   PEEE  T    I  + E A         +R P    +
Sbjct: 501 D--MAAELVFFQHDEVIVHCPEEEAATVVAAIRDAAELAGRLTFGATPVRFPFTTAV 555


>gi|212671402|ref|YP_002308401.1| DNA polymerase [Kluyvera phage Kvp1]
 gi|211997246|gb|ACJ14563.1| DNA polymerase [Kluyvera phage Kvp1]
          Length = 704

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 139/382 (36%), Gaps = 37/382 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           FN +S   +  +L TK  +     T +G  K   + LE +   D      I+ I E+  +
Sbjct: 334 FNPASRDHITRVL-TKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+        I +   R+H   +    +TGR     PN+  +P I+   G+  
Sbjct: 393 QKRIGQVAEGDNGWLRMIGEDG-RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPC 451

Query: 734 RRAFIS--------PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +        P     +  D S +ELR L H          ++    +  ++  +I
Sbjct: 452 RAAFGAEHNMKDGKPDPWIQVGVDASGLELRCLGHFMYR------YDEGEYVETILTGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +     +    IK +  + P I   
Sbjct: 506 HTKNQLAAGLPTRDNAKTFIYGFLYGAGAAKIGQIVGGTAEDGKRLIKNFLEQTPAIAAL 565

Query: 846 IEKTK-NFVRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E      V+ + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 REAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEE-ITTASQIIVHSMEKACLP 954
             ++   + L +  L          +  +HDE+      +E      ++   +M      
Sbjct: 624 LWIVETERLLLEAGLKHGWDGDFAYMAWVHDEIQVAARTQEIADKIVELAQQAMRNVG-D 682

Query: 955 KINLRVPLKVNIKVSNNWQEEN 976
             N R  L    K   NW++ +
Sbjct: 683 HFNFRCQLDTEGKTGANWKDCH 704


>gi|328885742|emb|CCA58981.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 277

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 128/264 (48%), Gaps = 16/264 (6%)

Query: 1   MQKENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           M     L LVDG   ++RA+Y  A  ++SR         + GF  +L K      + + A
Sbjct: 1   MTATAPLLLVDGHYLLHRAWYGFAARIMSRDKTIDRTG-VFGFTALLRK---AQIQHADA 56

Query: 59  SHFAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           S   V+FD       R     DYKA RP     L+  L LV+ A +  G+  IE  G EA
Sbjct: 57  SEIFVVFDSEDGSQARAGQDSDYKAQRPAPEPGLIESLALVKNALEHTGVRWIEQDGCEA 116

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---EEKIDI-EHVIKKWG 173
           DD+IAT    A   G AV I++TDKD +QL++  +          E +    EH++ ++G
Sbjct: 117 DDVIATLATGARAAGRAVDIMTTDKDYLQLLTDPSVRLLNTGLAMERRYTAGEHILPRYG 176

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           +  E+    +AL GD  DNIPG+ GIG  TAA LL +   LENI  +  R     + + +
Sbjct: 177 VLAEQWPDFRALMGDPADNIPGVRGIGATTAARLLADGRQLENIPADELRPAWTSQWQQV 236

Query: 234 LEYAETARLSRKLVMLRTDVPITI 257
           L + E  +L       +TD+P  +
Sbjct: 237 LRWREMIKL-----DTKTDLPDNL 255


>gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus]
 gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus]
          Length = 605

 Score =  165 bits (419), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 110/624 (17%), Positives = 214/624 (34%), Gaps = 93/624 (14%)

Query: 389 SASFKIITDTMD-AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           + +  I T  +D AF    +  A    D                      D  G     +
Sbjct: 36  TIATDIETPGLDRAFEINCVTFAWRWDDGSI--------------HSVLLDPVGNTLHRQ 81

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-------ISMRGFEDIMLMSYVLDSGR 500
             +              I HN  +D   L   G       I++    D +L++       
Sbjct: 82  ACID-----LYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFSLPDV 136

Query: 501 S-SHDIASIAQKWLSY------TRKEILKSRKSSIPID----KISDSQVQEHAIENSNVI 549
           + S  + +++ ++L         +     +   +I        I     +  A+ ++   
Sbjct: 137 TVSKSLTALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIAT 196

Query: 550 LQLWLLLRPKLIVEKLLHVYERL--------------DKPMIDVVSQMEITGIQIDQDLL 595
           L+L  LLR   I   L H +                  + +  V+ +    G+ +D + L
Sbjct: 197 LKLEPLLRAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYL 256

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS-GAKTKTGQWKTTA 654
            +   E     +  E  +    G +      K++ + L    + P+   +T TG  K T 
Sbjct: 257 TRYQEEKDAERIQHEA-LLAAHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATK 315

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                ++  D+P+     +  ++ K+                +       L ++ TGR+A
Sbjct: 316 DL---LDGFDHPLTIAQRKLAEVDKVLGYLTKV-ERQAAVTGRCHPQVGVLGASATGRMA 371

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
              P LQ  P       K  R  I+   + L S D+SQIE   +A++A        FE  
Sbjct: 372 YSMPELQQFP-------KDARPIITDDGQGLTSIDWSQIEPVTMANMAGDVGFLIPFEAG 424

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D++  +     G+ +   + + R  AK +  + +YG+    LA +++     A    ++
Sbjct: 425 EDLYEPI-QRSCGLPM---TKEGRDIAKVVLLATMYGMGVNGLALKIKHTVESAQQIRRQ 480

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
                P   +++ + +    Q G + T  GR +  D+               A+N  +QG
Sbjct: 481 MLAAMPESAKWMARVQGIADQYGRIITAAGRILPVDD----------GGVFRAVNYTVQG 530

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SA D+    ++ + ++     L   + L +HDEL+ +         S  +   M      
Sbjct: 531 SAYDVLASTIVRMERA----GLGDHLQLAMHDELIVDT------EVSDEVQQIMLTPPDF 580

Query: 955 KIN--LRVP-LKVN-IKVSNNWQE 974
            I    RVP L+ +   +   W +
Sbjct: 581 LIRWAGRVPVLRTDAADMGRAWAK 604


>gi|26988997|ref|NP_744422.1| DNA polymerase [Pseudomonas putida KT2440]
 gi|24983817|gb|AAN67886.1|AE016420_8 DNA polymerase [Pseudomonas putida KT2440]
          Length = 695

 Score =  165 bits (419), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 95/597 (15%), Positives = 195/597 (32%), Gaps = 125/597 (20%)

Query: 488 DIMLMSYVLDSGR--SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           D  L+   +  G+   SH + +   + L   + E     K+ +    +   +  E + E 
Sbjct: 116 DTGLLKKAVLPGKLFGSHSLEAWGYR-LRLMKGEYATEFKARMGDAYVDGMEWLEFSQEM 174

Query: 546 SNVILQLWLL---LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL-------L 595
            +  +Q  ++   L  +++ +        L+  +  +++  E  G   +++        L
Sbjct: 175 LDYCVQDVVVTSALWKRILGKNYSARALALEHRVAWLMAAQERNGFHFNREKAALLYAKL 234

Query: 596 KQVSAEISKNLLSLEENIYDLSGE------------------------------------ 619
            Q   ++ + L    +  +  +GE                                    
Sbjct: 235 AQRRGDLERELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFNQVGWF 294

Query: 620 ---------------KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
                          +FN SS   + D L     +     TK G+ +   + + +++   
Sbjct: 295 EKYTEGVRYTKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLS--- 351

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            P  K + E+  ++K  S  A+      + ++  R+H   +     TGR     PN+  +
Sbjct: 352 YPPCKLLTEYLLVAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGAATGRATHAYPNVAQV 411

Query: 724 PIK-TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE--NSLDIHRM 780
           P   +  G+  R  F  P    L+ AD S +ELR LAH        +  +   + DIH  
Sbjct: 412 PASGSPYGKDCRELFTVPLGWLLVGADASGLELRCLAHFMARYDGGKYVDILLNGDIHWA 471

Query: 781 V--AAEIFGVNIEKVS---PQMRRHAKTINFSIIYGISPFRL----------ATQLRIP- 824
              A  I     +  +      R  AKT  ++ +YG    ++          A  L +  
Sbjct: 472 NVQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVGTIVFGMVAKAKALGLDY 531

Query: 825 -------------------RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
                              ++        +  + P + + ++  K   +           
Sbjct: 532 QHLLDVFFNGQDNPDEEALKAAGKKLKATFLRKTPALKKLVKAVKEAAK----------- 580

Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM----- 920
           R H   ++     +++    AA+N  +QG+ A   ++ ++ +   L+   L         
Sbjct: 581 RGHLVGLDGRHVHVKSA--HAALNYLLQGAGALACKQWLVFLDDELQARGLKHGWDGDYA 638

Query: 921 -LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
               +HDE+      E I    +    +         N R PL    K+  NW E +
Sbjct: 639 FCAWVHDEVQIACRNEAIAVIVREAAEACVAKAGEAFNFRCPLAGESKMGLNWAETH 695


>gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 643

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 119/647 (18%), Positives = 214/647 (33%), Gaps = 118/647 (18%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  + T              +    + +D    +    ID       D      + 
Sbjct: 1   MKKISIDLET----YSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH 503
           +EILS L     +E   K   N  ++++ L R+    +  +G+   M+ S  L    S  
Sbjct: 57  EEILSAL----SDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLE 112

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL---WLLLRP-- 558
            +  + +       +      K+ I    I     + + +   N+       W + +   
Sbjct: 113 KVGEVLKLDKQKMNE-----GKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYN 167

Query: 559 KLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           +  VE  + + ++L    +         V   +   GI ID+ L+               
Sbjct: 168 QRDVETEMEIKKKLSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENM 227

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
           +   +L+G + N +SP QL + L  K L+  S AK               I   +  I +
Sbjct: 228 DRAIELTGLE-NPNSPLQLKEWLNKKGLEIDSLAK---------KDVESAIKNAEGDIKE 277

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK--- 726
            +   ++LSK      D++ N   K  +         +  TGR +     +QN+      
Sbjct: 278 VLELRQELSKSSVRKYDAMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLK 337

Query: 727 -------------------------TDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
                                      L Q IR AFI     + I +D+S IE R+LA I
Sbjct: 338 DLDLARSLVKNRDYETMEFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWI 397

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRLAT 819
           A+   +   FEN  DI+   A+ +FGV +EK  ++  +R+  K    +  Y  +   L  
Sbjct: 398 AEEQWVLDAFENGEDIYCRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKA 457

Query: 820 Q----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR------------------QNG 857
                + +   E    +  +    P I        + V+                  + G
Sbjct: 458 MGGIEMGLSEDELQSIVDSWREANPNIVSLWWDIDSVVKRVVKTRSKEEYKNLVISYEKG 517

Query: 858 --YVETIFGRRIHYDE-----------------INSPKSSIR-NINERAAINAPIQGSAA 897
             ++E    RR+ Y +                 I       +        +   +Q  A 
Sbjct: 518 ILFIELPSKRRLAYPKAKIGMNRFGGESVVYEGIVVGNKWDKIESYGGKFVENIVQAIAR 577

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           DI   AM+ + K          +++ IHDE+V E     I   +QI+
Sbjct: 578 DILAEAMMRLEKK------GFNIVMHIHDEVVIESDSSSIEEVNQIM 618


>gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 644

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 111/643 (17%), Positives = 213/643 (33%), Gaps = 132/643 (20%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + S S  I T +     +      +    + DD    +    +D       D      + 
Sbjct: 1   MNSISIDIETFSG----ANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRGFEDIMLMSYVLD---S 498
            EI++ L     ++   K   N  ++++ L +       +    ++  M+ S  +    S
Sbjct: 57  DEIINALL----DDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLS 112

Query: 499 GRSSHDIASIAQKWLSYTRKEIL------------KSRKSSIPIDKISD-SQVQEHAIEN 545
                 +  + ++ L+  +  I               R  ++P   +    + + + + +
Sbjct: 113 LEGVGAVLGLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRD 172

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ---VSAEI 602
               + +       L+ E +   Y         +  ++   GI ID   +KQ   +    
Sbjct: 173 VEAEMSIQQRFSKFLVPENIWEEYH--------LDQEINDRGIAIDMTFVKQAVVMDEHS 224

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
            + L++L ++I +L     N +S +Q+ D L            K           E +  
Sbjct: 225 REKLMALMQDITNLE----NPNSVQQMKDWLADNGLETDTLGKK--------AVAEMLKT 272

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
              P+   +   +QL+K       ++ N +    +    F    +  TGR +     LQN
Sbjct: 273 APEPLGTVLELRQQLAKSSVKKYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQN 332

Query: 723 IP----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +P                            I   L + IR AFI     K I AD+S IE
Sbjct: 333 LPQNHMPDLEQARALVRSGNFDALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIE 392

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGI 812
            R++A +A       VF+N  DI+   A+++F V +EK  V+  +R+  K    ++ YG 
Sbjct: 393 ARVIAWLAGEKWRIDVFQNGGDIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGG 452

Query: 813 SPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEK----TKNFVRQNGYVETIFG 864
           S   L    A ++ I   E    +  +    P I +         K  V+Q    ET   
Sbjct: 453 SVGALKSMGALEMGIEEEELQPLVTAWRQSNPNITKLWWDVDRAVKTCVKQKTPTETHGI 512

Query: 865 RRIH---------------------------------YDEINSPKSSIR-NINERAAINA 890
           + I+                                 Y+ +   K   R        +  
Sbjct: 513 KFIYQSGMLFIALPSGRRLAYVKPRMGENMFGGESVTYEGVGGTKKWERIESYGPKFVEN 572

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
            +Q  + DI   AM ++            ++  +HDE++ E  
Sbjct: 573 IVQAISRDILCHAMQTLKN--------CSIVAHVHDEIIIEAD 607


>gi|256786957|ref|ZP_05525388.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289770851|ref|ZP_06530229.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289701050|gb|EFD68479.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 493

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 164/474 (34%), Gaps = 81/474 (17%)

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           + + Q     + +   +         +  +   L +    +   + V ++M   G+    
Sbjct: 53  LFEPQAVHLPLSDLLAVYAEQQRRHDRSALPDRLRLLTAAESAGMLVAAEMNRAGLPWRA 112

Query: 593 DLLKQVSAEI----------SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           D+ ++V  ++           + L  L E +    G +     P  +    F +     G
Sbjct: 113 DVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRVRPDLPADVVKA-FGQAGVKVG 171

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD-SLPNHINKRTQRVHT 701
                      +    ++   D+P +K ++E+++L +I   +    L + +  R  R   
Sbjct: 172 -----------STRRWELESLDHPAVKPLIEYKKLYRIWVAHGWSWLQDWV--RDGRFRP 218

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
            +    T+TGR  +       IP        IRRA ++ P  +L+ AD  Q+E R+LA I
Sbjct: 219 EFLAGGTVTGRWVTNGGGGLQIPK------VIRRAVVADPGWRLVVADADQMEPRVLAAI 272

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
           ++   L +V     D+++ V+   F  +        R  AK      +YG +       L
Sbjct: 273 SRDPGLMEVAGRETDLYQSVSDRAFSGD--------RDQAKLAVLGAVYGQTSGDGLKNL 324

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH------------- 868
                           RFP    Y++       +   V T  GR                
Sbjct: 325 -----------AALRRRFPRAVAYVDDAARAGEEGRLVRTWLGRTCPPAAGAADGTEEAG 373

Query: 869 YDEINSPKSSIRN-------------INERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
             +  +  +  R                 R A N  +QGSAAD     + ++ ++  D  
Sbjct: 374 LPQDEAADAGDRAQEWVPGYASTNARARGRFARNFVVQGSAADWALLLLAALRQTCAD-- 431

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNI 966
           +A +++   HDE++   PEEE  T    I  + E A         +R P    +
Sbjct: 432 MAAELVFFQHDEVIVHCPEEEAATVVAAIRDAAELAGRLTFGATPVRFPFTTAV 485


>gi|32442301|gb|AAP82221.1| DNA polymerase [Podovirus GOM]
          Length = 399

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/414 (20%), Positives = 170/414 (41%), Gaps = 51/414 (12%)

Query: 488 DIMLMSYVLDSGRSS----HDIASIAQK-WLSYTRK------EILKS--RKSSIPIDKIS 534
           D +++S ++   R      H    +  K + S++ K      +  K    ++    +K+S
Sbjct: 1   DTLVLSRLVYPNRRERDAIHRWKYLDTKLYGSHSLKAWGQRLDFAKGDYGQTEDAWEKLS 60

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
           ++ V E+ I++  +  +L+ +L+PKL   K L +    ++ +  + ++ E  GI  D D 
Sbjct: 61  EAMV-EYCIQDVELTHKLYGILKPKLQSRKALSL----EQELTVICNRQERHGIPFDVDR 115

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEK---------------------FNLSSPKQLGDIL 633
            +   +++      L+  + D  G                       FN  S + +   L
Sbjct: 116 AQLFYSDLCGRRSELQTELIDKFGWWYTGELREPKTKPSYSKLIKVVFNPRSRQHIAKRL 175

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
                +     T +G+ K     L ++   + P  K + E+  ++K  S  A+     + 
Sbjct: 176 KDFYNWKPTEFTPSGEPKVDESVLSKL---EYPEAKLLTEYLLVNKRISQLAEEDQAWLK 232

Query: 694 -KRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYS 751
            +R  R+H   +   ++T R +   PNL  IP +    G++ R  F +P   + +  D S
Sbjct: 233 LERNGRIHGRVNTMGSVTSRCSHSHPNLAQIPSVSAPYGKECRELFCAPEGFRFLGVDIS 292

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            +ELR LAH         +F+N     +++  +I  VN        R  AKT  ++ +YG
Sbjct: 293 GLELRCLAHY------MALFDNGDYGKKLLEDDIHTVNQNAAGLSTRNQAKTFIYAFLYG 346

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
               ++ + +     E A   KR+  + P + +     K    Q GY++ + GR
Sbjct: 347 AGDEKIGSIVGGSSEEGAKLKKRFLSQIPALEKLRNAVKKKA-QKGYLKGLDGR 399


>gi|119637765|ref|YP_919001.1| DNA polymerase [Yersinia phage Berlin]
 gi|119391796|emb|CAJ70669.1| hypothetical protein [Yersinia phage Berlin]
          Length = 704

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 135/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           FN SS   +  +L TK  +     T +G  K   + LE +   D      I+ I E+  +
Sbjct: 334 FNPSSRDHITRVL-TKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+        I +   R+H   +    +TGR     PN+  +P I+   G+  
Sbjct: 393 QKRVGQVAEGDNGWLRMIGEDG-RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPC 451

Query: 734 RRAFIS--------PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +        P     +  D S +ELR L H          ++    +  ++  +I
Sbjct: 452 RAAFGAEHNMKDGKPDPWIQVGVDASGLELRCLGHFMYR------YDEGEYVETILTGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +     +    IK +  + P I   
Sbjct: 506 HTKNQMAAGLPTRDNAKTFIYGFLYGAGAAKIGQIVGGTSEDGKRLIKNFLEQTPAIAAL 565

Query: 846 IEKTK-NFVRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E      V+ + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 REAITGALVKDSKWVGGEQKVTWKRRWVRGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATK------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             ++   + L +            ++  IHDE       EEI      +     +     
Sbjct: 624 LWIVKTEEMLLEMGYKHGWDGDFCLMGWIHDEQQLACRTEEIAKVVIEVSQQAMRWVGDH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 FNFRCQLDTEGKMGPNWA 701



 Score = 41.2 bits (95), Expect = 1.00,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 57/218 (26%)

Query: 457 FENE---HFLKIGHN-IKYDKLV-------LHRYGISM--RGFEDIMLMSYVLDSG---- 499
            E+E     L + HN  KYD  V       L    +        D +++S ++ S     
Sbjct: 46  LEDEVARGGLIVFHNGHKYDIPVIELLAKKLLGRDVEFPKENVLDTLVLSRLVYSNIKDT 105

Query: 500 --------------RSSHDIASIAQKWLSYTRKEILKSRKSSI---PIDKIS-------D 535
                           SH + +   + L   + E     K+S+     D +        +
Sbjct: 106 DAGLLRAGKLPGKRFGSHALEAWGYR-LGEMKGEYKDDFKASLVESGEDYVDGLEWLMFN 164

Query: 536 SQVQEHAIENSNVILQLWLLLR------PKLIVEKLLHVYE---------RLDKPMIDVV 580
             + E+ +++  V   L+  L       P++                   +L+     ++
Sbjct: 165 EDMMEYNVQDVVVTKALFEKLCSNTFYFPEVEPNGSTEAERFWKGSIEAVKLEHDAAWLL 224

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           ++ME  G  ID   L+ + AE++     L   + +  G
Sbjct: 225 AKMERNGFPIDVKSLENLYAELAGRRGELLVELTNTFG 262


>gi|88854986|ref|ZP_01129651.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88815514|gb|EAR25371.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 558

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 143/427 (33%), Gaps = 72/427 (16%)

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEI-----------SKNLLSLEENIYDL-SGEK 620
           +     + ++M   G+    +   ++  ++              +  L + I +L    +
Sbjct: 163 ESAGALIAAEMRFAGLPWSAEAHDRILTDLLGPRPTMESARPSKVQDLVDEIRELLDAPQ 222

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
            N  SP  L   L                 +T +    ++    +P+I  +L +++L+++
Sbjct: 223 LNPESPSDLLRAL------------NVAGIQTNSTRAWELKQLRHPVISPLLHYKKLARL 270

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            +    +  +       R    Y     +TGR A+             L   IR A I  
Sbjct: 271 LTANGWNWLDSWV-HDGRFRPDYVPGGVVTGRWATSGGGALQ------LPHLIRGAVIPD 323

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           P  KL+ AD SQ+E RILA ++    + +   +      +VA+          + + R H
Sbjct: 324 PGWKLVVADASQLEPRILAAMSADRGMVEAGSSGDLYEGIVASG---------AVETRAH 374

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK      +YG               E+   + +    +P   + +E       +   V 
Sbjct: 375 AKLAMLGAMYGA-----------TTGESGRLMPKLARAYPRAIQLVEDAARAGERGEIVS 423

Query: 861 TIFGRRIH------------YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908
           T  GR                    +          R   N  +QG+AA+     M S+ 
Sbjct: 424 TQLGRSSPRGEDTGTYDESLTPAERAALRERGRSWGRFTRNFIVQGTAAEWALCWMASIR 483

Query: 909 KSLEDHKLA------TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLR 959
             L              ++  +HDE+V   PEE   T + +I  +  +A      ++ + 
Sbjct: 484 SRLVSLGEGKWLTESPHLVFFLHDEVVVHAPEELAETVAALIDDAAHEAGRLLFGELPVT 543

Query: 960 VPLKVNI 966
            PL V I
Sbjct: 544 FPLTVAI 550


>gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6]
 gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6]
          Length = 645

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 111/605 (18%), Positives = 219/605 (36%), Gaps = 124/605 (20%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----G-ISMRGFEDIML- 491
           D     T+ ++++  L     +E  +K   N  ++++ L R+    G ++ RG+   M+ 
Sbjct: 48  DLAQGETIPEDVIKSL----SDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVW 103

Query: 492 MSYV--------------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD-S 536
            + +              LD  + S     +    +     ++ + R  ++P   +    
Sbjct: 104 AATLGLPLSLAGVGAVLGLDKQKLSEGKDLVRYFCMPCNATKVNQGRTRNLPRHSLDKWR 163

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
               + I +  V + +   L    + +++   Y         +  ++   GI+ID  L  
Sbjct: 164 DFVAYNIRDVEVEVAIQQKLSNFPVTQEIWEEYW--------LDQEINDRGIEIDMILAD 215

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQ 655
                   +   + E +  L+G + N +S  Q+   L    L+  S  K         A 
Sbjct: 216 SAVNLDEVSKNEINEQLKKLTGLE-NPNSVLQMRSWLSQHGLEVESLGK--------AAV 266

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                   D+ + + +L  +QL+K       ++ N+     +    F    +  TGR A 
Sbjct: 267 KELIEQTNDDKLKEVLLLRQQLAKSSVRKYQAMQNYACLDNRARGLFQFYGANRTGRFAG 326

Query: 716 LEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLIS 747
               LQN+P                            +   L + IR AFI  P  K I 
Sbjct: 327 RGIQLQNLPQNHMSDLAEARELVRNGEYELLALLYDNVPEVLSELIRTAFIPKPGMKFIV 386

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTIN 805
           +D+S IE R++A +A      +VF N  DI+   A+++FGV +EK  V+  +R+  K   
Sbjct: 387 SDFSAIEARVIAWLAGEKWRKEVFRNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAE 446

Query: 806 FSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR------- 854
            ++ YG S   L    A  + +   E    +  +    P I +      +  +       
Sbjct: 447 LALGYGGSVGALTAMGALNMGLTEDELQPLVASWRETNPAITKLWWDIDSAAKGCVSVGA 506

Query: 855 ---QNG----------YVETIFGRRIHY--DEI----------------NSPKSSIRNIN 883
               +G          +++ + GRR+ Y    I                 + K       
Sbjct: 507 KTETHGITFEYKSGFMFIQLLSGRRLAYVKPRIGQNRFGGAAVTYEGVGTTKKWERLESY 566

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE-ITTASQ 942
               +   +Q  A DI         ++L+D+    +++  +HDE++ EVP+E  +   + 
Sbjct: 567 GPKFVENIVQAMARDIL----CFAMQNLKDY----RIVGHVHDEVIIEVPKEVTVEEVNS 618

Query: 943 IIVHS 947
           I+  +
Sbjct: 619 IMSQT 623


>gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 80/114 (70%)

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            RR AK INF +IYG+S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVPEYMERTR 114


>gi|30387474|ref|NP_848283.1| DNA polymerase [Yersinia pestis phage phiA1122]
 gi|30314111|gb|AAP20519.1| DNA polymerase [Yersinia pestis phage phiA1122]
          Length = 704

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 133/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 452 RAAFGAEHHLDEITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 565

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    +A+N  +Q + A I +
Sbjct: 566 RESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRS--PHSALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      EEI            +     
Sbjct: 624 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIDTAQEAMRWVGDH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 WNFRCLLDTEGKMGPNWA 701


>gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer]
 gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer]
          Length = 605

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 111/624 (17%), Positives = 214/624 (34%), Gaps = 93/624 (14%)

Query: 389 SASFKIITDTMD-AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           + +  I T  +D AF    +  A    D                      D  G     +
Sbjct: 36  TIATDIETPGLDRAFEINCVTFAWRWDDGSI--------------HSVLLDPVGNTLHRQ 81

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-------ISMRGFEDIMLMSYVLDSGR 500
             +              I HN  +D   L   G       I++    D +L++       
Sbjct: 82  ACID-----LYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFSLPDV 136

Query: 501 S-SHDIASIAQKWLSY------TRKEILKSRKSSIPID----KISDSQVQEHAIENSNVI 549
           + S  + +++ ++L         +     +   +I        I     +  A+ ++   
Sbjct: 137 TVSKSLTALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIAT 196

Query: 550 LQLWLLLRPKLIVEKLLHVY------ERLDKPMI--------DVVSQMEITGIQIDQDLL 595
           L+L  LLR   I   L H +         +   I         V+ +    G+ +D + L
Sbjct: 197 LKLEPLLRAMAINWTLDHPFADHGATTDAEAEKILGDQEIVHRVMLRRTGKGLAVDHEYL 256

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS-GAKTKTGQWKTTA 654
            +   E     +  E  +    G +      K++ + L    + P+   +T TG  K T 
Sbjct: 257 TRYQEEKDAERIQHEA-LLAAHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATK 315

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                ++  D+P+     +  ++ K+                +       L ++ TGR+A
Sbjct: 316 DL---LDGFDHPLTIAQRKLAEVDKVLGYLTKV-ERQAAVTGRCHPQVGVLGASATGRMA 371

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
              P LQ  P       K  R  I+   + L S D+SQIE   +A++A        FE  
Sbjct: 372 YSMPELQQFP-------KDARPIITDDGQGLTSIDWSQIEPVTMANMAGDVGFLIPFEAG 424

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D++  +     G+ +   + + R  AK +  + +YG+    LA +++     A    ++
Sbjct: 425 EDLYEPI-QRSCGLPM---TKEGRDIAKVVLLATMYGMGVNGLALKIKHTVESAQQIRRQ 480

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
                P   +++ + +    Q G + T  GR +  D+               A+N  +QG
Sbjct: 481 MLAAMPESAKWMARVQGIADQYGRIITAAGRILPVDD----------GGVFRAVNYTVQG 530

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SA D+    ++     +E+  L   + L +HDEL+ +         +  +   M      
Sbjct: 531 SAYDVLASTIVR----MEEAGLGDHLQLAMHDELIVDT------EVADDVQQIMLTPPDF 580

Query: 955 KIN--LRVP-LKVN-IKVSNNWQE 974
            I    RVP L+ +   +   W +
Sbjct: 581 LIRWAGRVPVLRTDAADMGRAWAK 604


>gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  164 bits (416), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 59/114 (51%), Positives = 80/114 (70%)

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            RR AK INF +IYG+S F LA QL IPR EA  Y+  YF R+PG+ +Y+E+T+
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLQYMERTR 114


>gi|325973136|ref|YP_004250200.1| 5'-3' exonuclease, DNA polymerase I-like protein [Mycoplasma suis
           str. Illinois]
 gi|323651738|gb|ADX97820.1| 5'-3' exonuclease, DNA polymerase I-like protein [Mycoplasma suis
           str. Illinois]
          Length = 268

 Score =  164 bits (416), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 123/262 (46%), Gaps = 13/262 (4%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAI--AGFCNMLWKLLQNSRKESIASHFAVI 64
           + ++DGS+   + F+A     +       N      F N L+  ++   K        ++
Sbjct: 9   VIIIDGSAIARKCFHAVTSDKKDQKIYENNDFSYKKFLNCLFSGIKKIMKTKRYFRKIIV 68

Query: 65  FDY-PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ---AFGIPAIEIQGFEADDI 120
           FD      FR +I+P+YKANR K+ E     +   +   +      I   E  G+E DD 
Sbjct: 69  FDRRGGDNFRKKIFPEYKANRKKVDESFYYWIEKSKSLLKRYLGLEIYVSE-NGYEGDDQ 127

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW-----GIP 175
           I T      ++   V I + D D +QLV     ++   K+  I I + ++ +     G+ 
Sbjct: 128 IGTIAKKFSEKFCYVDIFTIDSDFLQLVDEFISVHL-FKKSFIKISYNLENFSKLTDGLL 186

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
           P +    +AL+GDS DN PGIP IG KTA  L++++G+ +N L N   IK  + + +I E
Sbjct: 187 PHQFPLFKALSGDSSDNYPGIPNIGKKTAINLIKQFGSEDNFLKNYQNIKDWRIKTSISE 246

Query: 236 YAETARLSRKLVMLRTDVPITI 257
             E  ++  ++  ++T++   +
Sbjct: 247 NIEKLKIYLEIAKIKTNLFFPL 268


>gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli]
 gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli]
 gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli]
 gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli]
 gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli]
 gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli]
 gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli]
 gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli]
 gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli]
 gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli]
 gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli]
 gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli]
 gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli]
 gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli]
 gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli]
 gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli]
 gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli]
 gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli]
 gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli]
 gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli]
 gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli]
 gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli]
 gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli]
 gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli]
 gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli]
 gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli]
 gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli]
 gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli]
 gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli]
 gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli]
 gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli]
 gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli]
 gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli]
 gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli]
 gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli]
 gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli]
 gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli]
 gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli]
 gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli]
 gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli]
 gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli]
 gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli]
 gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli]
 gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli]
 gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli]
 gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli]
 gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli]
 gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli]
 gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli]
 gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli]
 gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli]
 gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli]
 gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli]
 gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli]
 gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli]
 gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli]
 gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli]
 gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli]
 gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli]
 gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli]
 gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli]
 gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli]
 gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli]
 gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli]
 gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli]
 gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli]
 gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli]
 gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  164 bits (416), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 80/114 (70%)

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI+P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            RR AK INF +IYG+S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114


>gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
 gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
          Length = 640

 Score =  164 bits (416), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 122/653 (18%), Positives = 237/653 (36%), Gaps = 88/653 (13%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           S  I T+ +D       A+    L Q       +       +V    +        +E++
Sbjct: 5   SLDIETEAVDPAEKLYAALQPWRLRQGRSRITSIAVCRPGFTVDQIVNRGDNTLWLREMI 64

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVL------HRYG-----ISMRGFEDIMLM-SYVLD- 497
             L     +   +   HN  +D   +       R G     +    + D  L+  ++++ 
Sbjct: 65  DLLDSVGND---VVYAHNALFDIAFMIAQLQPRRMGAIPDVLKRVKWRDTGLLTKWLING 121

Query: 498 ----SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE-NSNVILQL 552
               + R S+ +A++   +L          +  S  +    + +  E   E ++ + L+L
Sbjct: 122 QQPETMRFSYSLANLVATFLKDDEMTPFFVKMKSQGVSPGDNPEYCEKRGELDAIMTLKL 181

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            L L+  +  E+        ++  +  V+   I GI+ID++ +++     S++  ++   
Sbjct: 182 ALKLQAHMSKEQRTGFLT--EQDCLLPVANSWIMGIRIDREQVRRNDKFFSESKTAI--- 236

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI----- 667
              L  ++   +S K+L D+LF +   P  +KT +G     A  L+ +    N       
Sbjct: 237 AKKLGLDEGIFTSTKRLPDLLFKEWLLPVISKTPSGNPSCNADTLKLLQYQLNEAGNTEM 296

Query: 668 ---IKNILEWRQLSKIKSTYADSLPNHI-NKRTQRVHTFYSLASTMTGRL---------- 713
              +  ILE +Q S + S Y  S+   + +     ++    +  T TGR           
Sbjct: 297 ADKLGLILEAKQYSTLHSKYVKSMIEALEHTGDGYIYASPRIFGTYTGRFTYSSTTNGKD 356

Query: 714 ----------ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
                           +  IP +      +R++ I+P   ++  AD S  E R++A  +K
Sbjct: 357 YEDDNAKTKKFKSAIAVHQIPRRDK---MVRKSMIAPEGYEIYEADASGQESRLMALRSK 413

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEK-------------VSPQMRRHAKTINFSIIY 810
              + ++F   ++ H M  A I G +                   + R+  K  N S  Y
Sbjct: 414 DPVMIEIFSKDMNFHSMTGASIIGEDYSDFQVKYKAEGDEGGYYTEQRQLGKLTNLSCNY 473

Query: 811 GISPFRLATQ------LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            I    L+ +        +        ++ +   + G+ +Y E      R+ GY ET  G
Sbjct: 474 RIGGKALSQKAFLDYDTFLTVQTGLFLVQTFNRTYKGVPQYWEDVVWESRKQGYTETFGG 533

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
           RR    + +S K    +      IN PIQG+ AD+   A+    + + +       LL +
Sbjct: 534 RRYKLTDWHSHKWITESSA----INVPIQGAGADMKEIAIKETFEKVPE----ALFLLDL 585

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPK---INLRVPLKVNIKVSNNWQE 974
           HD   F VP        + + H++      K     L + L    K    + E
Sbjct: 586 HDANFFYVPSVNAVDLHEKLDHTLNTIDYEKYWGFKLEIELPYESKRGKTFAE 638


>gi|312436366|gb|ADQ83175.1| DNA polymerase [Yersinia phage Yep-phi]
          Length = 704

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 134/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           FN SS   +  +L TK  +     T +G  K   + LE +   D      I+ I E+  +
Sbjct: 334 FNPSSRDHITRVL-TKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+        I +   R+H   +    +TGR     PN+  +P I+   G+  
Sbjct: 393 QKRIGQVAEGDNGWLRMIGEDG-RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPC 451

Query: 734 RRAFIS--------PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +        P     +  D S +ELR L H          ++    +  ++  +I
Sbjct: 452 RAAFGAEHNLKDGKPDPWIQVGVDASGLELRCLGHFMYR------YDEGEYVETILTGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +     +    IK +  + P I   
Sbjct: 506 HTKNQMAAGLPTRDNAKTFIYGFLYGAGAAKIGQIVGGTAEDGKRLIKNFLEQTPAIAAL 565

Query: 846 IEKTK-NFVRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E      V+ + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 REAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATK------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             ++   + L +            ++  IHDE       EEI      +           
Sbjct: 624 LWIVKTEEMLLEMGYKHGWDGDFCLMGWIHDEQQLACRTEEIAKVVIEVSQQAMHWVGDH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 FNFRCQLDTEGKMGPNWA 701



 Score = 42.0 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 55/217 (25%)

Query: 457 FENE---HFLKIGHN-IKYDKLV-------LHRYGISM--RGFEDIMLMSYVLDSGRSSH 503
            E+E     L + HN  KYD  V       L    +        D ++MS ++ S     
Sbjct: 46  LEDEVARGGLIVFHNGHKYDIPVIELLAKKLLGRDVEFPKENVLDTLVMSRLVYSNIKDT 105

Query: 504 D-------------IASIAQKWLSYTRKEILKSRKSSIPIDKIS--------------DS 536
           D               S A +   Y   E+    K       +               + 
Sbjct: 106 DAGLLRAGKLPGKRFGSHALEAWGYRLGEMKGEYKDDFKASLVESGEDYVDGMEWLMFNE 165

Query: 537 QVQEHAIENSNVILQLWLLLR------PKLIVEKLLHVYE---------RLDKPMIDVVS 581
            + E+ +++  V   L+  L       P++                   +L+     +++
Sbjct: 166 DMMEYNVQDVVVTKALFEKLCSNTFYFPEVEPNGSTEAERFWKGSIEAVKLEHDAAWLLA 225

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +ME  G  ID   L+ + AE++     L   + +  G
Sbjct: 226 KMERNGFPIDVKSLENLYAELAGRRGELLVELTNTFG 262


>gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 99/629 (15%), Positives = 202/629 (32%), Gaps = 134/629 (21%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-------------RYGISMR 484
           D    + L +++LS L     +   +K   N  ++++ L              R  ++  
Sbjct: 48  DLANGHQLPEKVLSALV----DPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPA 103

Query: 485 GFEDIMLMS-YV-----LD--------SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
            +   M+ S Y+     LD          R       + +++ +     +        P 
Sbjct: 104 QWRCTMVWSAYLGLPMSLDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPP 163

Query: 531 DKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
               D   Q   +   +  V L +   L    +       Y         +   +  TGI
Sbjct: 164 ASDPDGWEQFISYNRRDVEVELAIHDRLADFPLPASEWDTY--------ALDQNVNDTGI 215

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           ++D+ L+    A   ++  +      +L+G + N +SP QL D L      P  + TK  
Sbjct: 216 RLDRVLVDHAVACDRQHRATTLARAQELTGLE-NPNSPIQLKDWLAAH-GAPLQSLTK-- 271

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
                 +    ++     + + +L   +L+K      +++ +   +  +         + 
Sbjct: 272 -----DEVAAALDTATGQVREVLLLRGELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAG 326

Query: 709 MTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAFISP 740
            TGR A     +QN+P                            +   L Q IR AFI  
Sbjct: 327 RTGRFAGRLVQVQNLPRNYLPDLAEARSLVRTGNYDAVELLYDSVPDTLSQLIRTAFIPA 386

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMR 798
              + + AD+S IE R++A +A      + F +  D++   A+ +FGV ++K   + ++R
Sbjct: 387 DGHRFVVADFSAIEARVIAWLAGEATTLEAFRDGKDLYCETASRMFGVPVDKHGANAELR 446

Query: 799 RHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           +  K    +  Y      L    A ++ +  SE    +  +    P + +          
Sbjct: 447 QKGKIAVLACGYQGGVGALKAMGALRMGLAESELQPLVDAWRAANPNVVQLWADINAAAI 506

Query: 855 QN--------------------GYVETIFGRRIHY------------------DEINSPK 876
           +                      ++    GRR+ Y                        K
Sbjct: 507 EAISTRLPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLGENRFGGTAITHEGITTGRK 566

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
                          +Q  A D+    M  V ++        ++++ +HDE+V E     
Sbjct: 567 WGQLETYGGKLTENIVQAVARDLLTFGMHQVDRA------GHRIVMHVHDEIVVETATAT 620

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +    +++      A  P     +PL  +
Sbjct: 621 VDEICKLM------AITPDWAAGLPLAAD 643


>gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp.
           SA3_actG]
          Length = 555

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 84/427 (19%), Positives = 151/427 (35%), Gaps = 68/427 (15%)

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN----------LLSLEENIYDL 616
            +    +     V +++  TG+    +  K +  E+             L  L E I   
Sbjct: 162 TLLTGTESAATLVAAELNATGLPWSAERHKDLLRELLGERYAGGGEPRGLAELAEEISRA 221

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G +     P ++                     K T+    ++   D+P +  +L +++
Sbjct: 222 FGRRVRPDLPAEVVRAFAE------------AGVKLTSTRRWELEKVDHPAVAPLLTYKK 269

Query: 677 LSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           L ++ + +    L + + +   R    Y +   ++GR  +       IP        +RR
Sbjct: 270 LYRVWTAHGWSWLADWVREG--RFRPRYVVGGAVSGRWTTAGGGALQIPK------VVRR 321

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           A ++ P  +L+ AD +Q+E RILA +A  T L  V   + D++  V+   F  +      
Sbjct: 322 AVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAFAGD------ 375

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R  AK      IYG +       L                RFP    Y+++      +
Sbjct: 376 --RDRAKIAVLGAIYGQTSGDGLKNL-----------AALRRRFPKAVAYVDEAARAGEE 422

Query: 856 NGYVETIFGRRIH-----------YDEIN--SPKSSIRNINERAAINAPIQGSAADITRR 902
              V T  GR                + +  +P  S      R   N  +QG+AAD T  
Sbjct: 423 GRLVRTWLGRTCPPLGGEVQEEAGIPQEDEPAPSPSASRARGRFTRNFVVQGAAADWTLL 482

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLR 959
            + ++ + L   K   +++   HDE++   P  E      +I  +  +A   C     LR
Sbjct: 483 LLAALRRELHTRK--AELVFFQHDEVIVHAPASEAAEIPALITEAAREATRVCFGDTPLR 540

Query: 960 VPLKVNI 966
           VP    I
Sbjct: 541 VPFTTAI 547


>gi|194473823|ref|YP_002048647.1| DNA polymerase [Morganella phage MmP1]
 gi|194307044|gb|ACF42026.1| DNA polymerase [Morganella phage MmP1]
          Length = 703

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 136/387 (35%), Gaps = 41/387 (10%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           FN SS   +   L      P+   T TGQ       LE +   D      I  I ++  +
Sbjct: 327 FNPSSRDHIQLKLQEAGWVPT-EFTPTGQPVVDDTVLEHVKVDDPEKQASIDLIKDYLLI 385

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +   R+H   +    +TGR     PN+  +P ++   G++ 
Sbjct: 386 QKRIGQAAEGDKAWLRYVEEDG-RMHGSVNPNGAVTGRATHSFPNVAQVPSVRAPYGEEC 444

Query: 734 RRAFISPPT---------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
           R+AF +                  D S +ELR LAH          F+N    H ++  +
Sbjct: 445 RKAFGAEHNRKPDGTKDPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGD 498

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           I   N        R +AKT  +  +YG    ++   +   +    +   ++    P I  
Sbjct: 499 IHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKAKFLENTPAIAA 558

Query: 845 YIEKTKNF-VRQNGYVETIF--------GRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
             E  +   V+ + +V             +R     ++  K  +R+    AA+N  +Q +
Sbjct: 559 LRESIEQTLVKSSKWVRNADGTSEQKVSWKRRWVKGLDGRKVHVRS--PHAALNTLLQSA 616

Query: 896 AADITRRAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSME 949
            A I ++ +++  + L    L          +  +HDE+      E I            
Sbjct: 617 GALICKQWIVTTEEMLLAKGLKHGWDGDFAYMAWVHDEIQVACRNEAIAKIVVETAQEAM 676

Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976
           +      N R  L    K+  NW + +
Sbjct: 677 RKVGEMFNFRCQLDTEGKIGANWCDCH 703


>gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
 gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
          Length = 662

 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 111/602 (18%), Positives = 215/602 (35%), Gaps = 128/602 (21%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRGFEDIMLMS 493
           D      L +E++  L     ++  +K   N  ++++ L RY    GIS+  F D   +S
Sbjct: 48  DLAQGEHLPQELIDALT----DDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLS 103

Query: 494 ----YVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDK-------ISDSQVQ 539
               + L+S      +   A   L  + +    +L   K  +   K       +  +  +
Sbjct: 104 QECSHFLNSESWRCSMVWAATMGLPLSLEGVGSVLGLEKQKLTEGKELIKYFSVPCAPTK 163

Query: 540 EHAIENSNVILQL---WLLLRP--KLIVEKLLHVYERLDKPMID--------VVSQMEIT 586
            +     N        W   +      VE  + + +RL K  +         +  ++   
Sbjct: 164 ANGGRTRNRPFHDPEKWDAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDR 223

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGAKT 645
           G++ID DL+ +     +++   L   I  ++  + N +S +Q+   L    L+  S  K 
Sbjct: 224 GVRIDMDLVTEAIEMDTRSRTELTSAIKKMTDLE-NPNSVQQMKQWLSNNGLETDSLGK- 281

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEW-RQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
                    + + ++     P ++N+LE  +QL+K       ++   +    +    F  
Sbjct: 282 ---------KVVAELIKTAPPELQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAF 332

Query: 705 LASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRA 736
             +  TGR A     LQN+P                            +   L Q IR A
Sbjct: 333 YGANRTGRWAGRLIQLQNLPQNHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTA 392

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VS 794
           FI     +   +D+S IE R++A  A  T   +VF    DI+   A+++F V +EK  ++
Sbjct: 393 FIPKSDTQFYVSDFSAIEARVIAWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGIN 452

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEY---IE 847
             +R+  K    ++ YG S   L       + +   E    +  +    P I ++   ++
Sbjct: 453 GHLRQKGKIAELALGYGGSIGALKAMGAIEMGLSEDELPPLVDAWRQTNPNIVKFWWDVD 512

Query: 848 KTKNFVRQNGYVETI----FGRR------------------------------IHYDEIN 873
           +      ++ +  +     F  R                              I Y+ + 
Sbjct: 513 RAVMEAVKHKHTTSCYGLTFSCRSGMLFITLPSGRNLAYVKPKIGTNKFGGECITYEGVG 572

Query: 874 SPKSSIR-NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           S K   R +      +   +Q ++ DI   AM ++           ++++ IHDELV E 
Sbjct: 573 STKKWERLDSYGPKFVENIVQATSRDILCYAMKTLRN--------CEIVMHIHDELVIEA 624

Query: 933 PE 934
             
Sbjct: 625 DP 626


>gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish]
 gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish]
          Length = 605

 Score =  164 bits (414), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 109/615 (17%), Positives = 214/615 (34%), Gaps = 92/615 (14%)

Query: 389 SASFKIITDTMD-AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           + +  I T  +D AF    +  A    D                      D  G     +
Sbjct: 36  TIATDIETPGLDRAFEINCVTFAWRWDDGSI--------------HSVLLDPVGNTLHRQ 81

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-------ISMRGFEDIMLMSYVLDSGR 500
             +              I HN  +D   L   G       I++    D +L++       
Sbjct: 82  ACID-----LYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFALPDV 136

Query: 501 S-SHDIASIAQKWLSY------TRKEILKSRKSSIPID----KISDSQVQEHAIENSNVI 549
           + S  + +++ ++L         +     +   +I        I     +  A+ ++   
Sbjct: 137 TVSKSLTALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIAT 196

Query: 550 LQLWLLLRPKLIVEKLLHVYERL--------------DKPMIDVVSQMEITGIQIDQDLL 595
           L+L  LLR   I   L H +                  + +  V+ +    G+ +D + L
Sbjct: 197 LKLEPLLRAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYL 256

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTA 654
            +   E     +  E  +    G +      K++ + L +  + P+   +T TG  K T 
Sbjct: 257 TRYQEEKDAERIQHEA-LLAAHGLEGGAGKGKKIVEYLESIGQLPANWPRTPTGGLKATK 315

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
                ++  D+P+     +  ++ K+            +   +       L ++ TGR+A
Sbjct: 316 DL---LDGFDHPLTTAQRKLAEIDKVLGYLTKV-ERQASVTGRCHPQVGVLGASATGRMA 371

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774
              P LQ  P       K  R  I+   + L S D+SQIE   +A++A        FE  
Sbjct: 372 YSMPELQQFP-------KDARPIITDDGQGLTSIDWSQIEPVTMANMAGDVGFLIPFEAG 424

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
            D++  +     G+ +   + + R  AK +  + +YG+    LA ++      A    ++
Sbjct: 425 EDLYEPI-QRSCGLPM---TKEGRDIAKVVLLATMYGMGVNGLALKINHTVESAQQIRRQ 480

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
                P   +++ + +    Q G + T  GR +  D+               A+N  +QG
Sbjct: 481 MLAAMPESAKWMARVQGIADQYGRIITAAGRILPVDD----------GGVFRAVNYTVQG 530

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           SA D+    ++ + ++     LA ++ + +HDEL+   P       +  +   M      
Sbjct: 531 SALDVLHDTIVRMERA----GLADELHVAMHDELIVSTP------VADEVQQIMLTPPDF 580

Query: 955 KIN--LRVP-LKVNI 966
            I    RVP L+ + 
Sbjct: 581 LIRWAGRVPVLRTDA 595


>gi|333025332|ref|ZP_08453396.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332745184|gb|EGJ75625.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 555

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/427 (19%), Positives = 151/427 (35%), Gaps = 68/427 (15%)

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN----------LLSLEENIYDL 616
            +    +     V +++  TG+    +  K +  E+             L  L E I   
Sbjct: 162 TLLTGTESAATLVAAELNATGLPWSAERHKDLLRELLGERYAGGGEPRGLAELAEEISRA 221

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G +     P ++                     K T+    ++   D+P +  +L +++
Sbjct: 222 FGRRVRPDLPAEVLRAFAE------------AGVKLTSTRRWELEKVDHPAVAPLLTYKK 269

Query: 677 LSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           L ++ + +    L + + +   R    Y +   ++GR  +       IP        +RR
Sbjct: 270 LYRVWTAHGWSWLADWVREG--RFRPRYVVGGAVSGRWTTAGGGALQIPK------VVRR 321

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           A ++ P  +L+ AD +Q+E RILA +A  T L  V   + D++  V+   F  +      
Sbjct: 322 AVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAFAGD------ 375

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R  AK      IYG +       L                RFP    Y+++      +
Sbjct: 376 --RDRAKIAVLGAIYGQTSGDGLKNL-----------AALRRRFPKAVAYVDEAARAGEE 422

Query: 856 NGYVETIFGRRIH-----------YDEIN--SPKSSIRNINERAAINAPIQGSAADITRR 902
              V T  GR                + +  +P  S      R   N  +QG+AAD T  
Sbjct: 423 GRLVRTWLGRTCPPLGGEVQEEAGIPQEDEPAPSPSASRARGRFTRNFVVQGAAADWTLL 482

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLR 959
            + ++ + L   +   +++   HDE++   P  E      +I  +  +A   C     LR
Sbjct: 483 LLAALRRELHTRE--AELVFFQHDEVIVHAPASEAAEIPALITEAAREATRVCFGDTPLR 540

Query: 960 VPLKVNI 966
           VP    I
Sbjct: 541 VPFTTAI 547


>gi|116671916|ref|YP_832849.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
 gi|116612025|gb|ABK04749.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
          Length = 568

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 89/528 (16%), Positives = 181/528 (34%), Gaps = 87/528 (16%)

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFED-------------IMLMSYVLDSGRSSH 503
            E      I H  +         G+ +    D                 +Y  ++ + + 
Sbjct: 45  LEKRRPRWIWHRTQDWYPAFLAAGVELERCYDLALCGAILAHSEFTAHTAYARNAEKLTQ 104

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           D  S   +    + +   +        +    S+   H++E              +   +
Sbjct: 105 DDDS---QQPPRSLQPPPQPAHQGALFEDSGLSRAPRHSLEELRTEYADQQEALSQASTD 161

Query: 564 ----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSL 609
               + L +    +     + ++++ TG+   ++L +++ A+              L +L
Sbjct: 162 ANRRQRLQLLLAAESAGAMIAAELQHTGVPWREELHEEILADYLGPRPPLGHRPARLEAL 221

Query: 610 EENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
              +  L      N  SP++L   L            + G    T +  E +    +P I
Sbjct: 222 TTELRRLLNSPGLNPDSPQELMRAL-----------HRNGIEVKTTRQWE-LKESSHPAI 269

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           + +L +++L+++ +    +  +       R    Y +   ++GR AS       IP    
Sbjct: 270 EPLLAYKKLARLHAANGWAWLDAWVN-NGRFQPEYVVGGVVSGRWASRGGGALQIPR--- 325

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
              +IR A  + P  KLI AD SQ+E R+L  +A+ + + +   +  D++  +AA+ FG 
Sbjct: 326 ---QIRGAVHADPGHKLIVADASQLEPRVLVALAQDSKMAEAARD-KDLYAGIAAQGFGG 381

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
           +        R  AK      IYG               E+   + +    +P    ++E+
Sbjct: 382 D--------RAKAKVALLGAIYGA-----------TTGESGRLMPQLTRTYPRAVGFVEQ 422

Query: 849 TKNFVRQNGYVETIFGRRIHYD---EINSPKSSIRNINERAA----------INAPIQGS 895
                   G V +  GR         + S KS+      RA            N  +QGS
Sbjct: 423 AAREGEAGGTVTSRLGRSSPPPSDRWLQSQKSTTAEEQRRADAIARSRGRFTRNFVVQGS 482

Query: 896 AADITRRAMISVHKSLE----DHKLATKMLLQIHDELVFEVPEEEITT 939
           AAD     +  + + L           +++  +HDE++   P+  +  
Sbjct: 483 AADWAACWLAELRRRLRAMRSAGGPTGELVFFLHDEVMVHCPDGSVDA 530


>gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 726

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 121/740 (16%), Positives = 242/740 (32%), Gaps = 128/740 (17%)

Query: 318 TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI 377
            E   ++  K   F+    + +    EQ   +  +      +      ++   +    + 
Sbjct: 13  AEALSNSCNKKIGFTLTEKRNTYKGGEQ--GETIITTDYLFASSYEFTEAVKLLQQELEK 70

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
            + +   E I   S  I T     +    I   +       +    +     D       
Sbjct: 71  YRILNANEEIKILSIDIET-----YSDNEITNGVHNYVDTPNFEILLFAYSCDGGSVQLV 125

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG--FEDIMLMSY 494
           D      +  +IL  L     + + +K   N  ++++ + ++ G+++    +    + + 
Sbjct: 126 DLAQGEEIPAKILDALT----DSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRAL 181

Query: 495 VLD---SGRSSHDIASIAQKWLSYTRKEIL------------KSRKSSIPIDKISD-SQV 538
           +L    S +S  ++  +  K L    + I               R  ++P       +Q 
Sbjct: 182 MLGLPASLQSCGEVLKLKHKKLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQF 241

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           + + I +  V   +        +    L+     ++ +      M   G+ ID +L    
Sbjct: 242 KRYCIRDVEVEKAIQRK-----VCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNA 296

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
                +    L   + +++  + N +SP QL   L +KL  P              +D +
Sbjct: 297 IRMNDEAQDELFAEMQEITNLE-NPNSPVQLKQWLSSKLGRPI--------QSLAKEDAK 347

Query: 659 QINCGDNPIIKNILEWRQLSK---IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           ++  G +  +K +L  R +S    +K   A +L    + +   +  FY      TGR A 
Sbjct: 348 ELATGASEDVKRVLYLRSMSSKTSVKKYEAMTLAKCSDNKLHDLLQFY---GAKTGRWAG 404

Query: 716 LEPNLQNIPIKTD----------------------------LGQKIRRAFISPPTKKLIS 747
               + N+P  +                             L Q IR AFI+     L  
Sbjct: 405 RIVQVHNLPRNSSKDLALARELVKKNDFELLELTFGNVCDILSQLIRTAFIAKENYTLCV 464

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM--RRHAKTIN 805
            D+S IE R++A +A      +VF  S  I+   AA +FGV+ + ++     R+  K   
Sbjct: 465 CDFSAIEARVIAWLAGEEWRLKVFRGSGRIYEASAARMFGVDEKTITHDSPLRQKGKIAE 524

Query: 806 FSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ------ 855
            ++ Y      L    A ++ +   E A  +  + +  P I +     +   ++      
Sbjct: 525 LALGYEGGANALKIMGADKMGLSDPEIAQIVSGWRNSSPNIVKLWRDVERAAKEAILSDR 584

Query: 856 -----NG-----------YVETIFGRRIHYD---------EINSPKSSIRNINER----- 885
                 G            ++   GR + Y             S   + R   +      
Sbjct: 585 IIKLKQGGLIFRKTSNILQIKLPSGRLLSYPLAKIVDNKICYMSQNQTTRQWVDTETYGG 644

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
             +   +Q  A D     ++ V K          +   +HDE++ EVP +E   A Q I 
Sbjct: 645 KLVENIVQAIARDCLGETILRVDKK------GYNICFHVHDEIIAEVPTDESAKALQDIK 698

Query: 946 HSMEKACLPKINLRVPLKVN 965
           +          +L  PLK  
Sbjct: 699 NIFATPITFAPDL--PLKGE 716


>gi|94499044|ref|ZP_01305582.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94428676|gb|EAT13648.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 288

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 126/251 (50%), Gaps = 17/251 (6%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI-ASHFAVIFDY 67
           ++D S+  +R ++A   +    DG  V+A+    + L  LL   + E + A      FD 
Sbjct: 4   IIDISAVFFRYYFAPGPVVINDDGYDVSAL---LSSLRWLL---KPEFLLAESTICCFDE 57

Query: 68  PAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
              T FR+E+ P+YKANRP   + ++ QL  ++L  +  G   +     EADD+IAT   
Sbjct: 58  SLGTGFRHELDPEYKANRPLPTDDIIYQLSALKLVCETLGFAVLASDELEADDLIAT--T 115

Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185
           IA        I S DKDL QL+      + D    +    + + ++ G+ P+++    A+
Sbjct: 116 IACYPSDPCVIHSRDKDLRQLLIEGRVTMQDVATNQIWTQKRLEEEVGLAPQQIPLYLAM 175

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--NASRI----KQKKRRENILEYAET 239
            GD  DNIPG+PGIG KTA  LLQ Y +   I+   ++  I       + ++NILEY + 
Sbjct: 176 VGDVSDNIPGVPGIGDKTALRLLQAYEDWPQIMDAVHSDDILPVRGSARIKQNILEYQDR 235

Query: 240 ARLSRKLVMLR 250
             L+ KL  L+
Sbjct: 236 IVLNLKLTQLK 246


>gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 565

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/427 (19%), Positives = 150/427 (35%), Gaps = 68/427 (15%)

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN----------LLSLEENIYDL 616
            +    +       +++  TG+    +  K +  E+             L  L E I   
Sbjct: 172 TLLTGTESAASWTAAELNATGLPWSAERHKDLLRELLGERYAGGGEPRGLAELAEEISRA 231

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G +     P ++                     K T+    ++   D+P +  +L +++
Sbjct: 232 FGRRVRPDLPAEVLRAFAE------------AGVKLTSTRRWELEKVDHPAVAPLLTYKK 279

Query: 677 LSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           L ++ + +    L + + +   R    Y +   ++GR  +       IP        +RR
Sbjct: 280 LYRVWTAHGWSWLADWVREG--RFRPRYVVGGAVSGRWTTAGGGALQIPK------VVRR 331

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           A ++ P  +L+ AD +Q+E RILA +A  T L  V   + D++  V+   F  +      
Sbjct: 332 AVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAFAGD------ 385

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R  AK      IYG +       L                RFP    Y+++      +
Sbjct: 386 --RDRAKIAVLGAIYGQTSGDGLKNL-----------AALRRRFPKAVAYVDEAARAGEE 432

Query: 856 NGYVETIFGRRIH-----------YDEIN--SPKSSIRNINERAAINAPIQGSAADITRR 902
              V T  GR                + +  +P  S      R   N  +QG+AAD T  
Sbjct: 433 GRLVRTWLGRTCPPLGGEVQEEAGIPQEDEPAPSPSASRARGRFTRNFVVQGAAADWTLL 492

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLR 959
            + ++ + L   K   +++   HDE++   P  E      +I  +  +A   C     LR
Sbjct: 493 LLAALRRELHTRK--AELVFFQHDEVIVHAPASEAAEIPALITEAAREATRVCFGDTPLR 550

Query: 960 VPLKVNI 966
           VP    I
Sbjct: 551 VPFTTAI 557


>gi|256831724|ref|YP_003160451.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
 gi|256685255|gb|ACV08148.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
          Length = 600

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/548 (17%), Positives = 183/548 (33%), Gaps = 85/548 (15%)

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIML-------MSYVLDSG--RSSHDIASI 508
           E +    +  +       L   G+ +    D+ L        ++V DS   R+    A  
Sbjct: 69  EIDRPRWVWADTSVVYDFLLARGVWVAKCHDLRLSRAILSRAAWV-DSSVFRAPSSQAEQ 127

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LH 567
             + L++       + +  +  D+       +   E    + +   +LR      +  L 
Sbjct: 128 GAQELAWWDGPTPVAARQDVLFDESHSEVTPDCVAE----LERQMRVLRTAGNGWRQRLS 183

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE-------ISKNLLSLEENIYDL---- 616
               L+     +  +M   G+  D+D  + +  E       +     +LE    +L    
Sbjct: 184 FLMALESAGALIAREMYAVGVPWDRDHHEALLREQLGERPAVGVRPAALEAVAQELRRLL 243

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
              + N  SPK L   L             +     T      +    +P +  +  ++ 
Sbjct: 244 DAPELNPDSPKDLLRAL------------NSAGIPVTTTSKWALREHRHPALAPLERYKH 291

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L+++ + +  +  +       R    Y+    +TGR  +       +P        IR A
Sbjct: 292 LARLWTAHGWAWLDEWVSDG-RYRPVYTPGGVVTGRWGADGGGALQLPR------AIRGA 344

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
             +      + AD SQ+E R+LA ++    + +      D+++ +A          V P 
Sbjct: 345 ARAGDGFTFVIADASQLEPRVLAAMSGDAAMAEAGRGG-DMYQRIA-------DAGVVP- 395

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            R HAK      +YG                +A  + ++   FP     +E       + 
Sbjct: 396 SREHAKYGMLGAMYGG-----------TTGVSAQVLPQFRQAFPTAMAMVESAARVGERG 444

Query: 857 GYVETIFGRRIHYDEINSPK----------SSIRNINE-RAAINAPIQGSAADITRRAMI 905
           G V T  GR      ++ P             +R+ +  R   N  +QGSAA+     M+
Sbjct: 445 GQVTTWLGRTSPPGVVSHPDESDDADVARERRLRSRSYGRFTRNFIVQGSAAEWAMAWMV 504

Query: 906 SVHKSLEDHKLAT------KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
            +   L    L         ++  +HDE++   P E   T ++++  S  +A        
Sbjct: 505 EIRLRLHQLSLGDPTLSAPSLVFFLHDEVLIHTPVEWAETVAEVVRVSARQAGETLFPGS 564

Query: 960 V---PLKV 964
           V   P+KV
Sbjct: 565 VVEFPVKV 572


>gi|283457405|ref|YP_003361981.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283133396|dbj|BAI64161.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 668

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 89/443 (20%), Positives = 157/443 (35%), Gaps = 61/443 (13%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           L +    +     V +++   GI  +     +   E+           + +  L E I  
Sbjct: 251 LRLLAAAESAGTLVAAEIGYYGIPFNVQAHHEHLCELLGPRPVPGERPQKMQELAEQIQR 310

Query: 616 -LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
            L     N  SP+ L   L +     S   T++ + K+ A  +         +I  IL +
Sbjct: 311 MLFMPSLNPDSPQDLLRALQSAG--VSVKSTRSWELKSWADAIPAQRDKRWALIDPILRY 368

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           ++L +I +    +  +              +    TGR  +       +P       +IR
Sbjct: 369 KKLYRIWTANGWTWADTWVSEGA-FRPHLEVGGAATGRWGASGGGALQLPA------EIR 421

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA--AEIFGVNIEK 792
           +A  +P  + L   D SQIE RILA +++   L        D++  +A  A + GV + +
Sbjct: 422 QAVQAPEGQVLTVTDGSQIEPRILAALSRDEALASAGR-GADLYAGIAELARLKGVGLTE 480

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
                R HAK    +I+YG     +              +      FP   E+ E+    
Sbjct: 481 -----RSHAKVGMLAIMYGGRSGEIG-----------ALLPHVAALFPQAMEFTERAARI 524

Query: 853 VRQNGYVETIFGRR--------------IHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
               G V T  GR                      S   S    + R   N  +QG+AA+
Sbjct: 525 GEAGGQVTTFLGRTSPPVDERFREIVADRSSPAAESRAVSTARAHGRMTRNFIVQGTAAE 584

Query: 899 ITRRAMISVHKSLEDHK-----LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
                M +V   L   +     + T+++  +HDEL+   PE E     +I+     +A  
Sbjct: 585 WALCWMGAVRSRLLSERIFGMPMRTRIVYFLHDELLLCGPELEADRVERIVREGAAEAAR 644

Query: 954 PKINLRVPLK--VNIKVSNNWQE 974
                RVP+   V++   +N+ +
Sbjct: 645 LLFG-RVPVDFPVSVARVHNYAD 666


>gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli]
 gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 79/114 (69%)

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           FI P    ++SADYSQIELRI+AH+++   L   F    DIHR  AAE+FG+ +E V+ +
Sbjct: 1   FIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850
            RR AK INF +IYG+S F LA QL IPR EA  Y+  YF R+PG+ EY+E+T+
Sbjct: 61  QRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114


>gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 662

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 113/654 (17%), Positives = 220/654 (33%), Gaps = 132/654 (20%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T +    +       +    +  +    +    +D       D      + 
Sbjct: 1   MKNISIDIETFSDIDLNK----CGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRGFED-----IMLMSYVLD 497
           +EI+  L     ++   K   N  ++++ L RY    G+S+  F D          + L+
Sbjct: 57  QEIIDALT----DDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARF-LN 111

Query: 498 SGRSSHDIASIAQKWLSYTRKEILK----------SRKSSIPIDKISDSQVQEHAIENSN 547
                  +   A   L  + K + +            K+ I    +  +  + +     N
Sbjct: 112 PEGWRCSMVWAATMGLPLSLKGVGQVLKLEDQKMDEGKALIKYFSVPCAPTKANGGRTRN 171

Query: 548 VILQL---WLLLRP--KLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDL 594
           +       W   +   K  VE  + + +RL    +         +  ++   G+++D DL
Sbjct: 172 MPFHDPEKWETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDL 231

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGAKTKTGQWKTT 653
           + +     +++   L   + D++ E  N +S +Q+   L    L+  S  K         
Sbjct: 232 VAKAIEMDTRSRTELTTAMKDIT-ELDNPNSVQQMKQWLSDNGLETDSLGK--------- 281

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
               E I    + +   +   +QL+K       ++   +    +    F    +  TGR 
Sbjct: 282 KVVAELIKTAPSELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRW 341

Query: 714 ASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKL 745
           A     LQN+P                            +   L Q IR AFI     +L
Sbjct: 342 AGRLIQLQNLPQNHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQL 401

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKT 803
             +D+S IE R++A  A      +VF +  DI+   A+++F V +EK  V+  +R+  K 
Sbjct: 402 YVSDFSAIEARVIAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKI 461

Query: 804 INFSIIYGISPFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEY--------IEKTKN 851
              ++ YG S   L       + +   E    +  +    P I ++        +E  K+
Sbjct: 462 AELALGYGGSVGALKAMGAIEMGLSEDELPPLVDAWRQTNPHIVKFWWDVDRAVMEAVKH 521

Query: 852 FVRQNGYVETIFGR-----------------------------RIHYDEINSPKSSIR-N 881
               + Y  T   R                              I Y+ + + K   R +
Sbjct: 522 KHTTSSYGLTFSCRSGMLFITLPSGRNLAYVKPKVGTNKFGGECITYEGVGATKKWERLD 581

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
                 +   +Q ++ DI   AM ++           ++++ IHDELV E    
Sbjct: 582 SYGPKFVENIVQATSRDILCYAMKTLRN--------CEIVMHIHDELVIEADPH 627


>gi|37956773|gb|AAP34041.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 132/378 (34%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPSVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 452 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLKNTPAIAAL 565

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V    +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 RESIQQTLVESFQWVAGEQQVKWKRRWIKGLDGRKIHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      EEI            +     
Sbjct: 624 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 WNFRCLLDTEGKMGLNWA 701


>gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
 gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
          Length = 645

 Score =  163 bits (412), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 118/655 (18%), Positives = 234/655 (35%), Gaps = 126/655 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  + T              +    +  D    +    +D       D     T+ 
Sbjct: 1   MKHLSLDLET----YSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GIS----MRGFEDIML--------MS 493
            EIL+ L     +E  +K   N  ++++ L R+ G+      RG++  M+        +S
Sbjct: 57  AEILTSL----SDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLS 112

Query: 494 YV-------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI-DKISDSQVQEHAIEN 545
            V       LD  + +     I    +     ++   R  ++P       S  + +   +
Sbjct: 113 LVGVGAVLGLDKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRD 172

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             V + +   L    +++ +   Y         +  ++   GI+ID+D ++        +
Sbjct: 173 VEVEIAIQGKLSNFPVLDSVWKEYW--------LDQEINDRGIEIDKDFVEAAVQLDELS 224

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
              L + + +L+G + N +S  Q+   L        G +T++   K  A+ LEQ    D 
Sbjct: 225 KAGLNQQLQELTGLE-NPNSVLQMRGWL-----LDHGLETESLGKKAVAELLEQ--PIDE 276

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP- 724
            + + ++  +QL+K       ++ N      +    F    +  TGR A     LQN+P 
Sbjct: 277 NLKQVLVLRQQLAKSSVKKYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQ 336

Query: 725 ---------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                                      +   L + +R AF+     K I +D+S IE R+
Sbjct: 337 NHMSDLSEARSLVKQSNFEMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARV 396

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPF 815
           +A ++      +VF+N  DI+   A+++FGV +EK  V+  +R+  K    ++ YG S  
Sbjct: 397 IAWLSGEKWRQEVFKNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVG 456

Query: 816 RL----ATQLRIPRSEAADYIKRYFHRFPGIHEYI----EKTKNFVRQNGYVETIFGRRI 867
            L    A ++ +   E    +  +      I E      +  K  V++     T   +  
Sbjct: 457 ALKAMDALEMGLTEDELQPLVNSWRDSNINITELWWAVDKAVKTCVKERRSTSTHGIKFE 516

Query: 868 H---------------------------------YDEINSPKSSIR-NINERAAINAPIQ 893
           +                                 Y+ + + K   R        +   +Q
Sbjct: 517 YKSGFLFIQLLSGRKLVYVKPKIGENKFGGEAVTYEGVGATKKWERLESYGPKFVENIVQ 576

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP-EEEITTASQIIVHS 947
             A DI   AM ++ K         +++  +HDE++ EVP E ++    Q++  +
Sbjct: 577 AIARDILCFAMENLRK--------YRIVGHVHDEVIIEVPMESKVEDICQLMSQT 623


>gi|37956721|gb|AAP33990.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score =  163 bits (412), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 132/378 (34%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQL 677
           FN SS   +   L      P+   T  G      + LE +   D      I  I E+  +
Sbjct: 334 FNPSSRDHIQKKLQEAGWVPT-KYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  IP +++  G++ 
Sbjct: 393 QKRIGQSAEGDKAWLRYVAEDGK-IHGSVNPNGAVTGRATHAFPNLAQIPSVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    H ++  +I
Sbjct: 452 RAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYAHEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLKNTPAIAAL 565

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V    +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 RESIQQTLVESFQWVAGEQQVKWKRRWIKGLDGRKIHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      EEI            +     
Sbjct: 624 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 WNFRCLLDTEGKMGLNWA 701


>gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016]
 gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 644

 Score =  163 bits (412), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 117/650 (18%), Positives = 211/650 (32%), Gaps = 146/650 (22%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + S S  I T +     +      +    + DD    +    +D       D      + 
Sbjct: 1   MNSISIDIETFS----SANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
            EI++ L     +    K   N  ++++ L ++        D       LD       + 
Sbjct: 57  NEIINAL----MDNSVTKWAFNAMFERVCLSKW----LNLTD------YLDPTSWKCSMV 102

Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVI-------------- 549
             A   L  + +    +L   K  +   K     + ++     +                
Sbjct: 103 WSAYMGLPLSLEGVGAVLGLEKQKLTEGK----DLIKYFCTPCSPTKSNGGRVRNLPKHD 158

Query: 550 LQLWLLLRP--KLIVEKLLHVYERLDKPMIDVVSQMEIT--------GIQIDQDLLKQ-- 597
           +  W   +      VE  + + +RL K  I      E          GI ID   +KQ  
Sbjct: 159 MDKWERFKAYNIRDVEAEMSIQQRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAV 218

Query: 598 -VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGAKTKTGQWKTTAQ 655
            +  +  + L++L ++I +L     N +S +Q+ + L    L+  S  K           
Sbjct: 219 KMDEQSREKLMALMQDITNLE----NPNSIQQMKEWLADNGLETDSLGK---------KA 265

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +     P+   +   +QL+K       ++ N +    +    F    +  TGR + 
Sbjct: 266 VAEMLKTAPEPLGTVLELRQQLAKSSIKKYTAMENAVCNDGRARGMFQFYGANRTGRFSG 325

Query: 716 LEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLIS 747
               LQN+P                            I   L + IR AF+     K I 
Sbjct: 326 RLIQLQNLPQNHMPDLEQARALVRSGNFDALTLIYDSIPEVLSELIRTAFVPQEGMKFIV 385

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTIN 805
           AD+S IE R++A +A       VF+N  DI+   A+++F V +EK  V+  +R+  K   
Sbjct: 386 ADFSAIEARVIAWLAGEKWRIDVFQNGGDIYCASASQMFNVPVEKNGVNGHLRQKGKIAE 445

Query: 806 FSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEK----TKNFVRQNG 857
            ++ YG S   L    A ++ I   E    +  +    P I +         K  V+Q  
Sbjct: 446 LALGYGGSVGALKSMGALEMGIEEEELQPLVTAWRQSNPNITKLWWDVDHAVKTCVKQKI 505

Query: 858 YVETIFGRRIH---------------------------------YDEINSPKSSIR-NIN 883
             ET   + I+                                 Y+ +   K   R    
Sbjct: 506 PTETHGIKFIYQSGMLFIVLPSGRRLSYVKPRMGENVFGGESVTYEGVGGTKKWERIESY 565

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               +   +Q  + DI   AM ++            ++  +HDE++ E  
Sbjct: 566 GPKFVENIVQAISRDILCHAMQTLKN--------CSIVAHVHDEIIIEAD 607


>gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 375

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 124/319 (38%), Gaps = 68/319 (21%)

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVFE 772
             NLQN+P K   G ++R  FI       + AD  QIE RI+AHI         + Q+F 
Sbjct: 24  GTNLQNLPAKGA-GVRVRNCFIPRKGFTFVGADLGQIEPRIMAHIMHTKYGDNSMRQIFM 82

Query: 773 NSLDIHRMVAAEIFGVNIEKV---------SPQMRRHAKTINFSIIYGISPFRLATQLRI 823
           + +D++   A + FG+  +           + + R+  KT   ++ Y  SP   A ++ +
Sbjct: 83  DGVDLYTTGAMQTFGLEEKYCLDEAYDPTGTFEPRKLMKTGQLAVSYDQSPKSFAKKMNV 142

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN---------- 873
               A  + + +   +P     ++  +  ++  GYVET+FGR+  + + N          
Sbjct: 143 TEEVAHMFFENFDRTYPSFRTMVKDIREEMKSCGYVETLFGRKRRFPDFNEVASQTARNE 202

Query: 874 -------------------------------------SPKSSIRNINERAAINAPIQGSA 896
                                                S K  +     RAA NA IQG+ 
Sbjct: 203 QKLIRLYTERKRLRNKKNPTAADMRRLTAVQDEIDILSEKRGLVGYWLRAAFNAVIQGTG 262

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT-ASQIIVHSMEKACLPK 955
           ADI +   I   +   +     +M   IHDE+   +P E++T     +I   M +     
Sbjct: 263 ADILKLIGIRNAEICRERG--WEMNASIHDEIKNSIPNEQLTEGTIDLINEIMTQ----T 316

Query: 956 INLRVPLKVNIKVSNNWQE 974
           + L VPL  +  +   W +
Sbjct: 317 VELSVPLITDTVIEPRWMQ 335


>gi|194100439|ref|YP_002003812.1| gp5 [Klebsiella phage K11]
 gi|193201378|gb|ACF15856.1| gp5 [Klebsiella phage K11]
          Length = 709

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 133/379 (35%), Gaps = 37/379 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           FN SS   +   L      P+   T+ G  K   + LE +  GD      I  I E+  +
Sbjct: 339 FNPSSRDHIALKLKEAGWVPT-EFTEKGAPKVDDEVLEHVRVGDPEKQRCIDLIKEYLMI 397

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  +P +++  G+  
Sbjct: 398 QKRIGQAAEGDKAWLRYVQEDGK-IHGSVNPNGAVTGRATHSFPNLGQVPGVRSPYGEPC 456

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          +++      ++  +I
Sbjct: 457 RAAFGAEHHLDGLTGQPWVQAGIDASGLELRCLAHFMSK------YDDGAYADVILNGDI 510

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
             VN        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 511 HTVNQTAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 570

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 571 REGIQQTLVESSRWVAGEQKVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 628

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEE-ITTASQIIVHSMEKACLP 954
             ++   + L    L          +  +HDE+       E       I   +M      
Sbjct: 629 LWIVETEELLLKAGLKHGWDGDFAYMAWVHDEIQVACRTSEIAQQVIDIAQQAMRNVG-D 687

Query: 955 KINLRVPLKVNIKVSNNWQ 973
               R  L    K+  NW 
Sbjct: 688 HFKFRCRLDTEGKMGPNWA 706


>gi|294630609|ref|ZP_06709169.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292833942|gb|EFF92291.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 566

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 164/473 (34%), Gaps = 90/473 (19%)

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           +E+   +         +      + +    +   + V ++M   G+    D+ +QV  ++
Sbjct: 127 LEDLIAVHAEQQRRHDRTAHPDRMRLLTAAESAGMLVAAEMNSAGLPWRADVHRQVLHDL 186

Query: 603 ----------SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
                      + L  L + +    G +     P ++    F +                
Sbjct: 187 LGERYAGGGEPRRLAELADEVSAAFGHRVRPDLPAEVVKA-FARAGVKV----------- 234

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTG 711
            +    ++   D+P ++ +LE+++L +I   +    L + + +   R    +    T+TG
Sbjct: 235 RSTRRWELRSVDHPAVEPLLEYKRLYRIWVAHGWSWLQDWVREG--RFRPEFLAGGTVTG 292

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R  +       IP        IRRA ++ P  +L+ AD  Q+E R+LA I++   L +V 
Sbjct: 293 RWVTNGGGALQIPK------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVA 346

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
             + D+++ V+   F  +        R  AK      +YG +       L          
Sbjct: 347 GRTSDLYQSVSDRAFAGD--------RAQAKLAVLGAVYGQTSGDGLKNL---------- 388

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN---------- 881
                 RFP    Y+++      +   V T  GR       NS  ++             
Sbjct: 389 -AALRRRFPRAVAYVDEAARAGEEGRLVRTWLGRTCPPAAANSEDATQEAGLPQDDPAER 447

Query: 882 -------------------------INERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
                                       R A N  +QGSAAD     + ++ ++  D  +
Sbjct: 448 PGGGSGDRTNGDRGWLPGYASSDARARGRFARNFVVQGSAADWALLLLAALRRTCRD--M 505

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNI 966
           A +++   HDE++   P+EE  T  + I  + E A         +R P    +
Sbjct: 506 AAELVFFQHDEVIVHCPKEEADTVVEAIREAAELAGRLTFGDTPVRFPFTTAV 558


>gi|153847210|ref|ZP_01993922.1| exodeoxyribonuclease IX [Vibrio parahaemolyticus AQ3810]
 gi|149744744|gb|EDM56212.1| exodeoxyribonuclease IX [Vibrio parahaemolyticus AQ3810]
          Length = 218

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 11/197 (5%)

Query: 11  DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA- 69
           D  + I R   A P         P + IA       + L     E+  +H   +FD+   
Sbjct: 31  DALNLIRRVHSAQPD--------PTD-IARTITTTQRTLTRILSEAKPTHIIAVFDHHKQ 81

Query: 70  -VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
              +R EI PDYK NR  +PE L+  L  ++ A    GI ++  +G EADD++AT     
Sbjct: 82  DRGWRAEILPDYKQNRKPMPEPLMQGLDAIQQAWWEQGIDSLLSEGDEADDLVATLATKV 141

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
              G  VTI+STDK   QL+SPT  + D  +   +D   + K++G+ P ++     LTG 
Sbjct: 142 ASHGEKVTIVSTDKGYCQLLSPTLQIRDYFQHRWLDEPFIEKEFGVKPSQLADYWGLTGI 201

Query: 189 SIDNIPGIPGIGYKTAA 205
           S   +PG+PGIG K A 
Sbjct: 202 SSSQVPGVPGIGPKAAK 218


>gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 842

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 138/393 (35%), Gaps = 74/393 (18%)

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
           PK    IL      P          +       +       ++ ++    ++S   ++  
Sbjct: 479 PKVESAILRAFAGEPHEGNYGVAYQQLEPVRGHEHAASVCRLLWHLQRSIRISAAITSVL 538

Query: 686 DSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
             L   I  ++             T TGRL   +PNLQN P   +    IR+AF + P  
Sbjct: 539 SPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQNPPSAHNDLYSIRKAFSARPGN 598

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--------- 794
            LI  DYSQ+ELRILAH+++   + +      DIH   A ++F    E V+         
Sbjct: 599 TLIVGDYSQLELRILAHMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAVANGSVGRLHS 658

Query: 795 ----------------------------PQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
                                          R+ AK +NFSI YG +   LA ++ +P +
Sbjct: 659 RIDRRATVQVVIDDAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVT 718

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQ-NGYVETIFGRRIHYDEINSPKSSIRNINER 885
           +  D   R+ +   G+  +  +    VR  +G          H  + ++ + S R     
Sbjct: 719 DIRDMFTRWNNSKKGVERWKAEILREVRACSGEFRHPRVGGRHRHDGHASRRSRRETTAH 778

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
                                            K+++Q+HDE++ E P E  T A  I+ 
Sbjct: 779 -------------------------------GVKIVMQVHDEVILEGPAENATDAVPIVR 807

Query: 946 HSMEKACL---PKINLRVPLKVNIKVSNNWQEE 975
             ME       P   + + L V+I    NW + 
Sbjct: 808 DLMEHPFADIKPDYRMLINLDVDIATGTNWSDA 840



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 124/369 (33%), Gaps = 86/369 (23%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW--VQKLETI-GSASFKIITDTMDAF 402
           T   +  E+  + S  P   +  T++      ++   ++ LE   G  ++      ++  
Sbjct: 48  TGGDVHSEKADETSLLPKKEEKATRVRADAFAKRLTKIRALEAHRGPVAWDTEFWNVELT 107

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
            + P   +   L        K++     L              ++ +L   + +FEN   
Sbjct: 108 RNTPAHSSGELLCLTAFGGGKLDFGSGPL------LFVDCKGPSRHVLDLFRSYFENPAK 161

Query: 463 LKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHD---------IASIAQKW 512
            KI HN   D  VL+ +GI++RG   D   ++ + DS  SS +         +  +A + 
Sbjct: 162 RKIFHNFAADAHVLYGHGITVRGLEADTRYLARLFDSSLSSWEDQVRVSNDLLVCLASRR 221

Query: 513 LSYTR-KEILK-------------SRKSSIP--IDKISDSQVQE---HAIENSNVILQLW 553
            ++ R +E++              + +  I       S+ +  E   +A +++     L+
Sbjct: 222 KNHRRQREVVGVSDGESENCLYRFAGRLGIGGLEAHCSEEKFGEWLKYAADDAYFTFMLY 281

Query: 554 LLLRPKLIVEK----------------------------------LLHVYERLDKPMIDV 579
             L   L  ++                                  +     +  +P  ++
Sbjct: 282 RRLTDTLRGQEWCTELHWQPIREKIRHGTTTFNGMNDPETYTGLSMSDFAVKFYRPFTEL 341

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-------GEKFNLS-------S 625
           + ++E  G   +++ L Q       +L   +E    ++       G+  N         S
Sbjct: 342 LVEIERRGFGANREYLIQQLTAAQADLERHKEAFRMIAQSLKDRRGQPLNPQAEFINPRS 401

Query: 626 PKQLGDILF 634
            KQ+  +LF
Sbjct: 402 AKQIRQLLF 410


>gi|328883338|emb|CCA56577.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 571

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 153/438 (34%), Gaps = 87/438 (19%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ + +  E+           + L  L + +  
Sbjct: 166 MRLLTAAESAGMLVAAEMHRAGLPWRADVHRDLLNELLGERYAGGGEPRRLAELADQVSA 225

Query: 616 LSGEKFNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
             G +     P  +        ++  S  +              ++   D+P ++ ++ +
Sbjct: 226 AFGRRVRPDLPADVVKAFAQAGVRLKSTRR-------------WELAELDHPAVEPLIAY 272

Query: 675 RQLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           ++L +I + +    L + +  R  R    Y    T++GR  +       IP        I
Sbjct: 273 KKLYRIWTAHGWSWLQDWV--RDGRFRPEYLPGGTVSGRWTTNGGGALQIPK------VI 324

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           RRA ++    +L+ AD  Q+E R+LA I++   L +V  +  D++  ++   F  +    
Sbjct: 325 RRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHPDDLYTRLSDRAFSGD---- 380

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
               R HAK      IYG +       L                RFP    Y+++     
Sbjct: 381 ----RDHAKIALLGAIYGQTSGDGLKNL-----------AALRRRFPRAVAYVDEAAKAG 425

Query: 854 RQNGYVETIFGRRIH---------------------------YDEINSPKSSIRNINERA 886
            +   V T  GR                                   S  +  R    R 
Sbjct: 426 EEGRLVRTWLGRTSPRAVGAGEAEEAGLPQEGGEQPAEEGEFVPGYASGNARARG---RF 482

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
             N  +QGSAAD     + ++ +SL    +  +++   HDE++   P EE    +  I  
Sbjct: 483 TRNFVVQGSAADWALLMLAALRRSL--AGMRAELVFFQHDEVIVHCPAEEAEAVTAAIRA 540

Query: 947 SMEKA---CLPKINLRVP 961
           + ++A      +  +R P
Sbjct: 541 AGDEAGRIAFGETPVRFP 558


>gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 655

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 111/629 (17%), Positives = 208/629 (33%), Gaps = 132/629 (20%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL----VLHRYG--------ISMRG 485
           D     ++  E+L+ L     +   +K  HN  ++++     LHR+         +  R 
Sbjct: 48  DLANGQSMPDEVLAALV----DPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQ 103

Query: 486 FEDIMLMS-YV-----LDSGRSSHDIA--------SIAQKWLSYTRKEILKSRKSSIP-- 529
           +   M+ S Y+     LD+  +   +          + +++ +     +L   K   P  
Sbjct: 104 WRCTMVWSAYLGLPMSLDAIAAVLKLDVQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPS 163

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            D    +   ++   +  V   +   L    + E     Y         +  ++   GI 
Sbjct: 164 ADPTGWAHFIDYNRRDVEVEQAIHDRLACFPMPESEWDTY--------ALDQRINDAGIL 215

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK-LKFPSGAKTKTG 648
           +D  L+    A    +  +       L+G   N +SP QL   L T+  +  S AK    
Sbjct: 216 LDHTLVDNAVAVDEHHRNASLARAQKLTGLD-NPNSPIQLKQWLATRGCELESLAK---- 270

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
                A+    ++     + + +     L+K       ++ N      +         + 
Sbjct: 271 -----AEVDSALDTATGAVKEVLELRGDLAKSSVKKYQAMQNVAGSDGRARGLIQFYGAG 325

Query: 709 MTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAFISP 740
            TGR A     +QN+P                            +   L Q IR AFI  
Sbjct: 326 RTGRFAGRLVQVQNLPRNYLPDLDQARTLVRTGNLDALELLYESVPDTLSQLIRTAFIPS 385

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMR 798
              + I AD+S IE R++A +A  T   + F    D++   A+ +FGV +EK  V+ ++R
Sbjct: 386 TGHRFIVADFSAIEARVIAWLAGETSTLEAFREGKDLYCETASRMFGVPVEKHGVNGELR 445

Query: 799 RHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           +  K    +  YG S   L    A  + +   E    +  +    P I       +    
Sbjct: 446 QKGKIAVLACGYGGSVGALKAMGALNMGLAEHELKPIVDAWRQANPHIVGLWADVEEAAI 505

Query: 855 ------------------QNG--YVETIFGRRIHY------------------DEINSPK 876
                             ++G  ++E   GRR+ Y                      + +
Sbjct: 506 AAISSRQPIRLRNLRFSVESGIFFIELPSGRRLAYVQPRLGENRWGGTSVTYTGTTTARR 565

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
                      +   +Q  A D+    M +V K+        ++++ +HDE+V + PE  
Sbjct: 566 WGQLETYGGKLVENIVQAIARDLLVTGMHAVAKA------GHQIVMHVHDEIVIDEPENS 619

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVN 965
             T +      M         L  PL  +
Sbjct: 620 GFTVTDA-CALMSTLPAWAEGL--PLDAD 645


>gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 646

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 110/649 (16%), Positives = 211/649 (32%), Gaps = 138/649 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T + +      +   + +    +   F        + V    D      + 
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVES-PNFEILLFAYSVDHQPVQVI---DLACGEQIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDI 505
           KEIL  L    E+E  +K   N  ++++ L R+ G     +         LD       +
Sbjct: 57  KEILLAL----EDEDVIKWAFNAAFERICLSRFLGYPTGEY---------LDPESWRCSM 103

Query: 506 ASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVIL------------ 550
              A   L  + +    +L   K  +   K     + ++  +                  
Sbjct: 104 VWAATMGLPLSLEGVGAVLGLEKQKLTEGK----DLIKYFCQPCAPTKTNGQRTRNRPFH 159

Query: 551 --QLWLLLRP--KLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQV 598
               W + +      VE  + + +RL +  +         +  ++   G+++D +L+   
Sbjct: 160 APDKWAMFKKYNIRDVETEMGIQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAA 219

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
               +++   L E + +++  + N +S +Q+   L            K           E
Sbjct: 220 IEMDTRSRTKLTETMKEITELE-NPNSVQQMKAWLSDNGLETDTLGKK--------AVAE 270

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +      + + +   +QL+K       ++   +    +    F    +  TGR +    
Sbjct: 271 LLKSAPPKLSQVLTLRQQLAKSSVRKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNI 330

Query: 719 NLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADY 750
            LQN+P                            +   L Q IR AFI     + + AD+
Sbjct: 331 QLQNLPQNHLSDLAEARSLVRSGNFEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADF 390

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSI 808
           S IE RI+A  A       VF    DI+   A+++F V +EK  ++  +R+  K    ++
Sbjct: 391 SAIEARIIAWFAGEKWRQDVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELAL 450

Query: 809 IYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY--------IEKTKNFVRQN 856
            YG S   L    A  + +   E    +  +    P I ++        +E  K     +
Sbjct: 451 GYGGSVGALKAMGALDMGLTEDELPPLVDAWRQSNPNIVKFWWNVDHAVMEAVKFKHTTS 510

Query: 857 GYVETIFGR-----------------------------RIHYDEINSPKSSIR-NINERA 886
            Y  T   R                              I Y+ I S K   R +     
Sbjct: 511 EYGLTFSCRSGMLFITLPSGRKLAYVKPKIGTNKFGGQCITYEGIGSTKKWERLDSYGPK 570

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +   +Q +A DI   AM ++            +++ IHDE+V E    
Sbjct: 571 FVENIVQATARDILCYAMQTLR--------CCSIVMHIHDEVVIEADPS 611


>gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK115]
          Length = 645

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 123/623 (19%), Positives = 219/623 (35%), Gaps = 130/623 (20%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMS- 493
           D      L K ILS L+    ++  +K   N  ++++ L +Y    +S R +    + + 
Sbjct: 48  DLAQGEELPKGILSALR----DDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAA 103

Query: 494 ------------YVLD-SGRSSHDIASIAQKWLSYTRKEILKS-RKSSIPIDKISD-SQV 538
                        VL+   +   +   + + +    R  I    R+ + P   + D    
Sbjct: 104 SLGLPLSLEGVGRVLNIEEQKMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELF 163

Query: 539 QEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           + +   +  V   +   L   P L  E+LL+  ++           +   GI +DQ+L+ 
Sbjct: 164 KRYCKRDVEVEQAIRKRLSNYPLLESEQLLYQLDQ----------AINDRGIAVDQELVS 213

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
           Q           + +  Y+LSG   N +S  QL   L  +  F      K          
Sbjct: 214 QAILGDLSYKEQVTQRAYELSGLD-NPNSVSQLKGWLENQGVFMDSLGKK--------DV 264

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            +Q+   D  I++ +     +SK       ++   +    +         +  TGR A  
Sbjct: 265 AKQLKEVDGEILEMLKLRLLMSKTSVKKYQAMERCVCSDDRVHGLLQFYGANRTGRWAGR 324

Query: 717 EPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISA 748
              +QN+P                            +   L + IR AF+     + I A
Sbjct: 325 LVQVQNLPQNKLKDLDLARTLVKDGQLKALDLLYDNVPNVLSELIRTAFVPKSGHQFIVA 384

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINF 806
           D++ IE R+LA ++  T   +VFE   DI+   AA +FGV +EK  V+  +R+  K    
Sbjct: 385 DFAAIEARVLAWLSGETWRLEVFEQGGDIYCASAASMFGVPVEKHGVNGHLRQKGKIAEL 444

Query: 807 SIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY---IEKTKNFVRQNG-- 857
           ++ YG S   L    A  + +   E    + ++    P I  +   I+K    V +    
Sbjct: 445 ALGYGGSVGALKAMGALDMGLDEEELQPLVNQWRMANPHIVAFWWVIDKASKEVYETREP 504

Query: 858 ---------------YVETIFGRRIHY------------DEINSPKSSIRNINERAAINA 890
                          ++    GR++ Y              +            R     
Sbjct: 505 QKVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGKPGLTYEGIGENKKWSRIDTYG 564

Query: 891 P------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE--ITTASQ 942
           P      +QG A D+    M+     L+  +L   ++L +HDE V EV E E  +    Q
Sbjct: 565 PKLVENIVQGIARDLLAHGMM----QLQKQELD--IVLHVHDEAVVEVKEGEASVEEVCQ 618

Query: 943 IIVHSMEKACLPKINLRVPLKVN 965
           +       A LP     +PL+ +
Sbjct: 619 LF------ATLPDWAEGLPLRAD 635


>gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
          Length = 1564

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/364 (22%), Positives = 147/364 (40%), Gaps = 33/364 (9%)

Query: 577  IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
              + +++   G+++D DL++++ AE +  L +  E+I     +  N  S +Q+   L  +
Sbjct: 1188 QRMTARVADRGLRLDADLVERLHAEQTAALTAASEHIRAFGVD--NPGSDQQVAAAL-ER 1244

Query: 637  LKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQLSKIKSTYADSLPNHIN 693
            L  P   +TKTG+       L+ +   D  I   ++  L+++        + +     + 
Sbjct: 1245 LGAPLP-RTKTGRPSVAKGVLDPLKNVDGEIGDLVRARLDYQTAENRLGLFLEPYRQLVT 1303

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                R        +  TGR++ + PNLQ +P +       R    + P   LISAD+S +
Sbjct: 1304 NGDGRARPTIYTLAADTGRMSCVRPNLQQVPREG----GFRACITADPGHVLISADFSGV 1359

Query: 754  ELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
            ELR+ A +++   L  +  +   DIHR +A  ++G          R  AK   F  +YG 
Sbjct: 1360 ELRVAAALSQDQNLMAIVADPDRDIHREIAQLVWG---PDAGKPERYQAKRKVFGRLYGS 1416

Query: 813  SPFRL-ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE--TIFGRRIHY 869
                L  +   +    A   I+      PG+  +  +        G  E     GR I+ 
Sbjct: 1417 GLNGLITSDPPVSEPIAKAIIEAMDLMTPGLSSW-SRMVADGVDAGRTEFQAYSGRTIYM 1475

Query: 870  DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
                            A  N  IQG+A ++   A++         +    +LL +HDELV
Sbjct: 1476 PTDR----------GYAGPNYCIQGTARELLIDALVRWS----GTRWGNAVLLPVHDELV 1521

Query: 930  FEVP 933
              VP
Sbjct: 1522 VHVP 1525


>gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4]
 gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Lactobacillus gasseri ATCC 33323]
 gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4]
          Length = 644

 Score =  162 bits (409), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 115/655 (17%), Positives = 221/655 (33%), Gaps = 127/655 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  I T       +      +      DD    +     DL      D T    + 
Sbjct: 1   MKQISIDIET----YSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSH 503
           + I+  L    ++   +K   N +++++ L R   + +   G+    + S  L    S  
Sbjct: 57  QPIVKAL----DDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLS 112

Query: 504 DIASIAQKWLSYTRKEILKSRKS--------SIPIDKISDSQVQEHAIENSNVILQLWLL 555
           D+ ++    L   R++I   ++                + ++   +   +     + +  
Sbjct: 113 DVGTV----LGLPRQKITAGKELVRYFCTPCKPTKSNQNRTRNFPYHAPDKWQQFKQYN- 167

Query: 556 LRPKLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQVSAEISKNLL 607
              +  VE  + + ++L++  +         +   +   GI+IDQ L+            
Sbjct: 168 ---QRDVEVEMEITQKLERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHD 224

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
              +    L+G   N +SP QL D L    +   S +K    Q   T             
Sbjct: 225 QYLQVSQKLTGLA-NPNSPLQLKDWLNQRGMNIDSLSKASVAQLLQTTTGK--------- 274

Query: 667 IIKNILEWRQL-SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP- 724
            +  +L  RQL SK       ++   + +  +         +  TGR A     +QN+P 
Sbjct: 275 -VHQVLSLRQLLSKSSVKKYQAMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPR 333

Query: 725 ---------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                                      +   L Q IR AFI         AD+S +E R+
Sbjct: 334 NSMPDLEEARELVKQGNTTALSMLYDSVPDVLSQLIRTAFIPSQGHHFYVADFSAVEARV 393

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPF 815
           +A ++      + F N+ DI+   A+++FGV + K  V+ ++R+  K    ++ YG S  
Sbjct: 394 IAWLSGEEWRQKAFANNEDIYCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIG 453

Query: 816 RL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN--------------- 856
            L    AT L +   E    ++ + +  P I ++        ++                
Sbjct: 454 ALKAMGATNLGLTEEELHSLVQMWRNASPHIVQFWWDIDKAAKECIKSHLPQATHGIKFI 513

Query: 857 -----GYVETIFGRR-----------------IHYDEINSPKSSIRNINERAA-INAPIQ 893
                 ++    GR+                 I +  IN+ K   R     A  +   +Q
Sbjct: 514 YRSGCMFLRLRSGRKLCYSKPKIGINRFGSESITFMGINAVKKWDRIETYGAKLVENIVQ 573

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE-EITTASQIIVHS 947
            ++ D+   AM    + LED       ++ IHDE V + P    +    +I+   
Sbjct: 574 ATSRDLLAEAM----RRLEDAGNPV--VMHIHDEAVIDAPANYSLEKMVKIMTEV 622


>gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
 gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
          Length = 655

 Score =  162 bits (409), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 114/674 (16%), Positives = 218/674 (32%), Gaps = 136/674 (20%)

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            I + ++    ++     +    +  D    +    ID       D     ++  E+L+ 
Sbjct: 7   DIESFSL----AQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVLAA 62

Query: 453 LKKFFENEHFLKIGHNIKYDKL----VLHRYGISM--------RGFEDIMLMS-YV---- 495
           L     +   +K  HN  ++++     L  +   +        R +   M+ S Y+    
Sbjct: 63  LV----DPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPM 118

Query: 496 -LDSGRSSHDIA--------SIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIE 544
            LD+  +   +          + +++ +     +L   K   P   D    ++  ++   
Sbjct: 119 SLDAVATVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           +  V L +   L    + E     Y         +  ++   GI +D  L+         
Sbjct: 179 DVEVELAIHDRLACFPMPESEWDTYT--------LDQRINDAGILLDHTLVDNAVGVDEH 230

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +  +       L+G + N +SP QL   L ++     S AK         A+    ++  
Sbjct: 231 HRNATLARAQTLTGLE-NPNSPIQLKQWLASRGCVLDSLAK---------AEVDAALDTA 280

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
              + + +     L+K       ++ N      +         +  TGR A     +QN+
Sbjct: 281 TGTVKEVLGLRGDLAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNL 340

Query: 724 P----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           P                            +   L Q IR AFI  P  + I AD+S IE 
Sbjct: 341 PRNYLPDLDQARTLVRTGNLEALELLHESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEA 400

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           R++A +A  T   Q F    D++   A+ +FGV +EK  V+ ++R+  K    +  +G S
Sbjct: 401 RVIAWLAGETTTLQAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGS 460

Query: 814 PFRLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKTK------------------N 851
              L     +    A       +  +    P I       +                   
Sbjct: 461 TGALERMGALTMGLAEHELKPIVDAWRAANPHIVALWAGVEEAAIAAIASRQSIRLRNLR 520

Query: 852 FVRQNG--YVETIFGRRIHY------------------DEINSPKSSIRNINERAAINAP 891
           F  + G  ++E   GRR+ Y                      + +               
Sbjct: 521 FSVEAGILFIELPSGRRLAYVKPRLGENRWGGTSITYTGTTTARRWGQLETYGGKLTENI 580

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +Q  A D+    M +V K+        ++++ +HDE+V + PE    TA+      M   
Sbjct: 581 VQAIARDLLVTGMHAVAKA------GHQIVMHVHDEIVIDEPENSGFTATGA-CELMSTL 633

Query: 952 CLPKINLRVPLKVN 965
                 L  PL  +
Sbjct: 634 PAWAEGL--PLDAD 645


>gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378]
          Length = 684

 Score =  162 bits (409), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 124/667 (18%), Positives = 234/667 (35%), Gaps = 137/667 (20%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           + K+  + +    I T       +      +    + DD    +    +D       D  
Sbjct: 33  LGKVVAMKNLEIDIET----YSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLM 88

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-----GISMRG--FEDIMLMS 493
               + KEIL  L     +E   K   N +++++ L RY     G  +    ++  M+ S
Sbjct: 89  DGEKIPKEILDALT----DETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWS 144

Query: 494 -YV--------------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD-SQ 537
            Y+              L+  + +     I    L  T  +I   R  ++  D+I    Q
Sbjct: 145 AYMGLALSLEGVGAVLGLEKQKLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQ 204

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            + +   +    +Q+   L    + E +   Y         +  ++   GI++D D +KQ
Sbjct: 205 FKAYNKRDVEAEIQIQQRLIKFPVPEDIWDEYH--------LDQEINDRGIKVDMDFVKQ 256

Query: 598 ---VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGAKTKTGQWKTT 653
              +     + LL++ + I +L     N +S +Q+   L    L+  +  K         
Sbjct: 257 AIAMDDISHEKLLTVMQQITNLD----NPNSVQQMKSWLCENGLEMETLGK--------- 303

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
               E++   D  + + +   +QL+K       ++ N +   ++    F    +  TGR 
Sbjct: 304 KAVAEKLKETDGELNEVLSLRQQLAKSSVKKYTAMENAVCSDSRARGMFQFYGANRTGRF 363

Query: 714 ASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKL 745
           A     LQN+P                            I   L Q IR AF+     K 
Sbjct: 364 AGRLVQLQNLPQNHMPDLKEARNIVRNGDVETLEMLYEDIPDTLSQLIRTAFVPRVGHKF 423

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKT 803
           I AD+S IE R+L+ +A  T   +VF +  DI+   A+++F V +EK  V+  +R+  K 
Sbjct: 424 IVADFSAIEARVLSWLAGETWRTKVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKI 483

Query: 804 INFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ---- 855
              ++ YG S   L    A ++ +   E    +  +    P I ++        +Q    
Sbjct: 484 AELALGYGGSVGALKAMGALEMGLEEEELKPLVNAWRMSNPNITQFWWDVDRAAKQCVKE 543

Query: 856 --------------NG--YVETIFGRRIHY--DEI----------------NSPKSSIRN 881
                         +G  ++    GRR+ Y    I                 + K     
Sbjct: 544 NKSQETHSIEFHCFSGMLFIVLPSGRRLAYVKPRIGENQFGGESVTYEGVGGTKKWERLE 603

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV-PEEEITTA 940
                 +   +Q  + DI   AM S+           +++  +HDE++ E  P+  +T  
Sbjct: 604 SYGPKFVENIVQAISRDILMHAMKSLR--------HYRIVAHVHDEVIIETNPQISVTEV 655

Query: 941 SQIIVHS 947
            + +   
Sbjct: 656 CKQMSQV 662


>gi|194100488|ref|YP_002003333.1| gp5 [Yersinia phage Yepe2]
 gi|193201221|gb|ACF15702.1| gp5 [Yersinia phage Yepe2]
          Length = 706

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 136/380 (35%), Gaps = 37/380 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           FN SS   +  +L TK  +     T +G  K   + LE +   D      I+ I E+  +
Sbjct: 334 FNPSSRDHITRVL-TKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+        I +   R+H   +    +TGR     PN+  +P I+   G+  
Sbjct: 393 QKRVGQVAEGDNGWLRMIGEDG-RIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYGEPC 451

Query: 734 RRAFIS--------PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +        P     +  D S +ELR L H          ++    +  ++  +I
Sbjct: 452 RAAFGAEHNMKDGKPDPWIQVGVDASGLELRCLGHFMYR------YDEGEYVETILTGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTIN--FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
              N        R +AKT N  +  +YG    ++   +     +    IK +  + P I 
Sbjct: 506 HTKNQMAAGLPTRDNAKTFNGIYGFLYGAGAAKIGQIVGGTSEDGKRLIKNFLEQTPAIA 565

Query: 844 EYIEKTK-NFVRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
              E      V+ + +V        +R     ++  K  +R+    AA+N  +Q + A I
Sbjct: 566 ALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKVHVRS--PHAALNTLLQSAGALI 623

Query: 900 TRRAMISVHKSLEDHKLATK------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
            +  ++   + L +            ++  IHDE       EEI      +     +   
Sbjct: 624 CKLWIVKTEEMLLEMGYKHGWDGDFCLMGWIHDEQQLACRTEEIAKVVIEVSQQAMRWVG 683

Query: 954 PKINLRVPLKVNIKVSNNWQ 973
              N R  L    K+  NW 
Sbjct: 684 DHFNFRCQLDTEGKMGPNWA 703



 Score = 41.2 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 57/218 (26%)

Query: 457 FENE---HFLKIGHN-IKYDKLV-------LHRYGISM--RGFEDIMLMSYVLDSG---- 499
            E+E     L + HN  KYD  V       L    +        D +++S ++ S     
Sbjct: 46  LEDEVARGGLIVFHNGHKYDIPVIELLAKKLLGRDVEFPKENVLDTLVLSRLVYSNIKDT 105

Query: 500 --------------RSSHDIASIAQKWLSYTRKEILKSRKSSI---PIDKIS-------D 535
                           SH + +   + L   + E     K+S+     D +        +
Sbjct: 106 DAGLLRAGKLPGKRFGSHALEAWGYR-LGEMKGEYKDDFKASLVESGEDYVDGLEWLMFN 164

Query: 536 SQVQEHAIENSNVILQLWLLLR------PKLIVEKLLHVYE---------RLDKPMIDVV 580
             + E+ +++  V   L+  L       P++                   +L+     ++
Sbjct: 165 EDMMEYNVQDVVVTKALFEKLCSNTFYFPEVEPNGSTEAERFWKGSIEAVKLEHDAAWLL 224

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           ++ME  G  ID   L+ + AE++     L   + +  G
Sbjct: 225 AKMERNGFPIDVKSLENLYAELAGRRGELLVELTNTFG 262


>gi|170781985|ref|YP_001710317.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156553|emb|CAQ01704.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 592

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 91/508 (17%), Positives = 176/508 (34%), Gaps = 91/508 (17%)

Query: 486 FEDIMLMSYVLDS----GRSSHDIA-SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           ++D  + +  L +        HD+  S A   LS    +   +R  + P D  + ++ + 
Sbjct: 88  WDDTAVWARTLIAAGVRVARCHDLRLSHAILRLSTQTADSALARLPAGPWDAAAPAEREP 147

Query: 541 HA---------IENSNVILQLWLLLRPKLI------VEKLLHVYERLDKPMIDVVSQMEI 585
            A           +     +L   LR +L           L +    +     V ++M  
Sbjct: 148 SASATLFDDLDASDGRSPDELVAELRLQLEAIAGSAESGRLRLLLAAESAGALVAAEMSA 207

Query: 586 TGIQIDQDLLKQVSAEISK----------NLLSLEENIYD-LSGEKFNLSSPKQLGDILF 634
            G+  D  +   +  ++             LL L   I + L+    N+ SP  +   L 
Sbjct: 208 DGLPWDTAVHDALLVDLLGGRPAHSGAPPALLRLAARIREILAAPDLNVDSPPDVLRAL- 266

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
                      +      ++    ++   D+P+I  +LE ++LS++ +    +       
Sbjct: 267 -----------RRAGVDASSTRQWELQEIDHPVIAPLLEHKKLSRLLTANGWTWMETWI- 314

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           R  R H  Y     +TGR A+       +P       +IR A  + P  +L+ AD +Q+E
Sbjct: 315 RDGRFHPEYVPGGVVTGRWAASGGGALQLPR------QIRSAVRADPGWRLVVADAAQLE 368

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
            R+LA +++   +        D+++ +        ++      R HAK      +YG   
Sbjct: 369 PRVLAALSEDRAMADAGR-GTDLYQGL--------VDAGVVDTRAHAKVAMLGAMYGA-- 417

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD---E 871
                       E+   + R    +P    Y+E+        G V T  GR         
Sbjct: 418 ---------TSGESGRLMPRLVRAYPRATGYVERAARAGESGGVVSTRLGRSSPPPGDAW 468

Query: 872 IN----------SPKSSIRNI-----NERAAINAPIQGSAADITRRAMISVHKS---LED 913
           ++          SP  + R         R   N  +QGSAA+     +  + +    LE 
Sbjct: 469 VDVQQIGRAGEASPSDAARARTSARDQGRFTRNFVVQGSAAEWALCWLAGLRRRLAALER 528

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTAS 941
                 ++  +HDE++   P++ +    
Sbjct: 529 PGSRPHLVFFLHDEVMVHTPDDRVDEVR 556


>gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 646

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 111/654 (16%), Positives = 218/654 (33%), Gaps = 129/654 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T        +     +    + D+    +    ID       D     T+ 
Sbjct: 1   MKTLSIDIET----YSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-----G--ISMRGFEDIMLMSYVLD-- 497
           +EI++ L    E++  +K   N  ++++ L R+     G  +S   +   M+ +  +   
Sbjct: 57  EEIIAAL----EDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLP 112

Query: 498 -SGRSSHDIASIAQKWLSYTRKEIL------------KSRKSSIPIDKISD-SQVQEHAI 543
            S      +  + ++ L+  +  I               R  + P          + + I
Sbjct: 113 LSLEGVGAVLGLEKQKLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNI 172

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            +    + +   LR   +  ++   Y         +  ++   G+++D +L+ Q  A  +
Sbjct: 173 RDVETEMGIQHKLRKFPVPNEVWEEYH--------IDQEINDRGVRLDMELVSQAIAMDT 224

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           ++   L   I D++  + N +S +Q+   L            K           E +   
Sbjct: 225 RSREELTAAIKDMTELE-NPNSVQQMKQWLSDNGIETDSLDKK--------AVAELLKDA 275

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            + +   +   +QL+K       ++   +    +    F    +  TGR +     LQN+
Sbjct: 276 PDNLADVLTLRQQLAKSSVRKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNL 335

Query: 724 P----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           P                            +   L Q IR AFI         AD+S IE 
Sbjct: 336 PQNHLPDLSEARSLVRSGDFDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEA 395

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           R++A  A  +   QVFE   DI+   A+++F V +EK  ++  +R+  K    ++ YG S
Sbjct: 396 RVIAWFAGESWRQQVFEKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGS 455

Query: 814 PFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY---IEKTKNFVRQNGYVETI---- 862
              L    A  + +   E    +  +    P I E+   +++      +  +  T     
Sbjct: 456 VGALKAMGALDMGLNEEELPALVDAWRQANPRIVEFWWAVDRAVMEAVKYKHTTTDYGLT 515

Query: 863 FGRRIHYDEINSPKSSIRNI-------------------------NERAAINAP------ 891
           F  +     I  P                                 ER     P      
Sbjct: 516 FSCKSGMLFITLPSGRKLAYVKPKIGTNKFGGSCITYEGVGGTKKWERLDSYGPKFVENI 575

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV-PEEEITTASQII 944
           +Q +A DI   AM ++            +++ IHDELV E  P+  +    + +
Sbjct: 576 VQATARDILCYAMKTLR--------CCSIVMHIHDELVIEADPKVSLDAICEQM 621


>gi|302559315|ref|ZP_07311657.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302476933|gb|EFL40026.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 563

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 149/443 (33%), Gaps = 87/443 (19%)

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYDL 616
            +    +   + V ++M  TG+    D+ + V  ++           + L  L + +   
Sbjct: 157 RLLTAAESAGMLVAAEMNRTGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVSAA 216

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G +     P  +    F +                 +    ++   D+P +  ++E+++
Sbjct: 217 FGRRVRPDLPADVVKA-FAQAGVKV-----------ASTRRWELESVDHPAVAPLIEYKK 264

Query: 677 LSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           L +I   +    L + +  R  R    +    T+TGR  +       IP        IRR
Sbjct: 265 LYRIWVAHGWSWLQDWV--RDGRFRPEFLAGGTVTGRWVTNGGGALQIPK------VIRR 316

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           A ++ P  +L+ AD  Q+E R+LA I++   L +V     D+++ V+   F  +      
Sbjct: 317 AAVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAFSGD------ 370

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R  AK      +YG +       L                RFP    Y++       +
Sbjct: 371 --RAQAKLAVLGAVYGQTSGDGLKNL-----------AALRRRFPRAVAYVDDAARAGEE 417

Query: 856 NGYVETIFGR-----------------------------RIHYDEINSPKSSIRNINERA 886
              V T  GR                             R       S  +  R    R 
Sbjct: 418 GRLVRTWLGRTCPPAARTGDDAAEEAGIPVADEGTPDGDRAWVPGYASTDARARG---RF 474

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A N  +QGSAA      ++          +A +++   HDE++   PEEE  T    I  
Sbjct: 475 ARNFVVQGSAA--DWALLLLAALRRTLAGMAAELVFFQHDEVIVHCPEEEAETVVAAIRE 532

Query: 947 SMEKAC---LPKINLRVPLKVNI 966
           + E A      +  +R P    +
Sbjct: 533 AAELAGRLTFGETPVRFPFTTAV 555


>gi|220913904|ref|YP_002489213.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
 gi|219860782|gb|ACL41124.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
          Length = 590

 Score =  161 bits (408), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 99/563 (17%), Positives = 188/563 (33%), Gaps = 99/563 (17%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFED-------------IMLMSYVLDSGRSSHDIASIAQK 511
           I H  +     L R G+ +    D                  Y   S R+  D   +  K
Sbjct: 70  IWHRTQDWYPALLRAGVELERCYDLTLCGNILAFSQFTAHTEYARTSDRTPVDDPVLPPK 129

Query: 512 WLSYTRKEILKSR-----KSSIPIDKISDSQVQEHAIENSNVILQLWL-LLRPKLIVEKL 565
            L        +        +  P+    +    E+A +   +        +R +L     
Sbjct: 130 SLLPPAPPADQGALFEDPGTVPPLRHTPEELRTEYAAQQRALAGAGTDGSMRGRLQ---- 185

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA----------EISKNLLSLEENIYD 615
             +    +     + ++M+  G+   +DL + + A          +    L +L   +  
Sbjct: 186 --LLLAAESAGAMIAAEMQYAGVPWREDLHEDILAGYLGPRPPVGQRPARLEALAAELRR 243

Query: 616 LSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           L G    N  SP++L   L                 +  +    ++    +P+I  +LE+
Sbjct: 244 LLGSPALNPDSPQELIRAL------------HRNGIEVKSTSKWELKDLPHPVIGPLLEY 291

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           ++LS++ +    S  +       R    Y +   ++GR AS       IP       ++R
Sbjct: 292 KKLSRLHTANGWSWLDAWVAGG-RFRPEYVVGGVVSGRWASRGGGALQIPR------QVR 344

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
            A  + P  KLI AD SQ+E R+L  +A+ + + +   +  D++  +AA+ FG +     
Sbjct: 345 GAVHADPGYKLIVADASQLEPRVLVALARDSVMAEAARD-QDLYAGIAAKGFGGD----- 398

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG               E+   + +    +P   +++E+      
Sbjct: 399 ---RAKAKVALLGAMYGA-----------TSGESGRLMPQLARTYPRAVDFVEQAARAGE 444

Query: 855 QNGYVETIFGR------RIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITR 901
             G V T  GR         Y    S          SI     R   N  +QGSAAD   
Sbjct: 445 AGGTVTTRLGRSSPPPSERWYQSQRSATAEEQRRAESIARSRGRFTRNFVVQGSAADWAA 504

Query: 902 RAMISV----------HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
             +  +                     +++  +HDE++   P   +    + I  +   A
Sbjct: 505 CWLAELRRRLRSLRAHGTGAGPGGAGPELVFFLHDEVMVHAPAGAVDECIRAIEDAAGAA 564

Query: 952 CLPKI-NLRVPLKVNIKVSNNWQ 973
                  + V   V++ V +++ 
Sbjct: 565 KELLFGPIPVEFPVSVAVVDSYD 587


>gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 655

 Score =  161 bits (408), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 117/664 (17%), Positives = 216/664 (32%), Gaps = 134/664 (20%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++     +    +  D    +    ID       D  G  ++  E+L+ L     +   +
Sbjct: 14  AQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVLAALV----DSSVV 69

Query: 464 KIGHNIKYDKL----VLHRYG--------ISMRGFEDIMLMS-YV-----LDSGRSSHDI 505
           K  HN  ++++     L  +         +  R +   M+ S Y+     LD+  +   +
Sbjct: 70  KWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSLDAVAAVLKL 129

Query: 506 A--------SIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLL 555
                     + +++ +     +L   K   P   D    ++  ++   +  V L +   
Sbjct: 130 DVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDVEVELAIHDR 189

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           L    + E     Y         +   +   GI +D  L+    A    +  +       
Sbjct: 190 LAFFPMPEAEWDTY--------ALDQCINDAGILLDHTLVDNAVAVDEHHRNASLARAQK 241

Query: 616 LSGEKFNLSSPKQLGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           L+G   NL+SP QL   L T+  +  S AK +      TA            ++K +LE 
Sbjct: 242 LTGLD-NLNSPIQLKQWLVTRGCELESLAKAEVDAALDTATG----------VVKEVLEL 290

Query: 675 R-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--------- 724
           R  L+K       ++ N      +         +  TGR A     +QN+P         
Sbjct: 291 RGDLAKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQ 350

Query: 725 -------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
                              +   L Q IR AFI  P  + I AD+S IE R++A +A  T
Sbjct: 351 ARSLVQTGNLDALELLYESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGET 410

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
                F    D++   A+ +F V +EK  ++ ++R+  K    +  YG S   L      
Sbjct: 411 TTLAAFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMGAF 470

Query: 824 PRSEA----ADYIKRYFHRFPGIHEYIEKTKNFVR------------------QNG--YV 859
               A       +  +    P I +     +                      ++G  ++
Sbjct: 471 TMGLAEHELKPIVDAWRQANPHIVQLWADVEQAAIAAISSRQPIRLRNLRFSVESGILFI 530

Query: 860 ETIFGRRIHY------------------DEINSPKSSIRNINERAAINAPIQGSAADITR 901
           E   GRR+ Y                      + +           +   +Q  A D+  
Sbjct: 531 ELPSGRRLAYVQPRLGENRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLV 590

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
             M +V K+        ++++ +HDE+V + P   +  A       M         L  P
Sbjct: 591 VGMHAVAKA------GHRIVMHVHDEIVIDEPTN-LDFAVADACKLMSTLPAWAEGL--P 641

Query: 962 LKVN 965
           L  +
Sbjct: 642 LDAD 645


>gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens
           FD-1]
          Length = 654

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 121/659 (18%), Positives = 230/659 (34%), Gaps = 123/659 (18%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   +  I T + +          +    + +     + +  ID     + D    +TL 
Sbjct: 1   MKQLTIDIETASDEDISE----CGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKL----VLHRYGISMRGFEDI---MLM--SYVLD 497
            EILS L     ++  +K   N+ ++++     L R    + GFED     +   S+  D
Sbjct: 57  DEILSALT----DKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCD 112

Query: 498 SGRSSH-----DIASIAQKWLSYTRKEILKSR--KSSIPIDKISDSQVQEHAIENS---- 546
              S +      +  + +      +K        K    + +     +  +   ++    
Sbjct: 113 MIHSRYLGMMSSLDDMGKLLRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYDKSDAPKKW 172

Query: 547 -NVILQLWLLLRPKLIVEKLLHVYERLDKPMID--VVSQMEITGIQIDQDLLKQVSAEIS 603
              I      +  +L +++LL      D    +  +  ++   GI +D    ++     S
Sbjct: 173 KEFIEYNRRDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDS 232

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
                L   + +L+    N +SP Q+ D L  +         K+            +   
Sbjct: 233 NVKKELFPKLKELT-RLDNPNSPAQMKDWLMRQGIEADSLDKKS--------MPLLLASA 283

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            + + + ++ ++QLSK   +   ++     K  +    F    +  TGR A     LQN+
Sbjct: 284 PDDVKEVLMLYQQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNL 343

Query: 724 P----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           P                            I   L Q IR AFI P  KK + AD+S IE 
Sbjct: 344 PQNHLDNLAETKWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEA 403

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           R+++ +A  T   + F N  DI+   AA++FGV +EK  V+  +R+  K    +  YG S
Sbjct: 404 RVISWLAGETWRMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGS 463

Query: 814 PFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV---------------- 853
              +     T+L +   E    ++ +    P I +     ++                  
Sbjct: 464 IGAIKAMGGTELNLTDDELYSLVEDWRKTSPNIVKLWSDVQSVAVKVITDQSSMTFGRLK 523

Query: 854 --RQNG--YVETIFGRR-----------------IHYDEINSPKSSIRNINERAA-INAP 891
              + G  ++E   GRR                 I Y+ +   K  +R     A  +   
Sbjct: 524 FSYEIGILFIELPSGRRLAYVRPKVEKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENI 583

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            QG A D+   +M ++            ++  +HDE++ E   +   T    + H ME+
Sbjct: 584 TQGIARDLLLHSMAAMKDM--------DIVGHVHDEVIVECDPD---TTVVQVCHLMEQ 631


>gi|297201366|ref|ZP_06918763.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147869|gb|EFH28770.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 563

 Score =  160 bits (406), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 141/422 (33%), Gaps = 84/422 (19%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    +  ++V  E+           + L  L + +  
Sbjct: 156 MRLLTAAESAGMLVAAEMNRAGLPWSAETHRRVLHELLGERYAGGGEPRRLAELADEVSA 215

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +                 +    +I   D+P +K ++E++
Sbjct: 216 AFGRRVRPDLPADVVKA-FAQAGIKVK-----------STRRWEIQSLDHPAVKPLVEYK 263

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I   +    L + +  R  R    +    T+TGR  +       IP        IR
Sbjct: 264 KLYRIWVAHGWSWLQDWV--RDGRFRPEFLAGGTVTGRWVTHGGGALQIPK------VIR 315

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++ P  +L+ AD  Q+E R+LA I++   L +V     D+++ V+   F  +     
Sbjct: 316 RAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAFSGD----- 370

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG +       L                RFP    Y++       
Sbjct: 371 ---RAQAKLAVLGAVYGQTSGDGLKNL-----------AALRRRFPKAVAYVDDAARAGE 416

Query: 855 QNGYVETIFGRRIH-----------------------------YDEINSPKSSIRNINER 885
           +   V T  GR                                     S  +  R    R
Sbjct: 417 EGRLVRTWLGRTCPPAAGAGDAEEAGIPQDDPAGQPASGEDGWVPGYASTNTRARG---R 473

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A N  +QGSAA      ++          +A +++   HDE++   P+EE       I 
Sbjct: 474 FARNFVVQGSAA--DWALLLLAALRQACAGMAAELVFFQHDEVIVHCPKEEAEAVVAAIR 531

Query: 946 HS 947
            +
Sbjct: 532 EA 533


>gi|86171563|ref|XP_966236.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
 gi|46361202|emb|CAG25066.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
          Length = 1444

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 151/353 (42%), Gaps = 76/353 (21%)

Query: 669  KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            +NI  +R+  K+   Y ++LP +I K T ++H  ++     TGRL+  +PNLQNI  +  
Sbjct: 1014 RNIKLYRESKKLVQNYIENLPKYIQKNTNKIHCNFNQIGASTGRLSCDQPNLQNIHSRFR 1073

Query: 729  LG------------------QKIRRAFISPPT----------------------KKLISA 748
                                  I +  IS                         K LI+ 
Sbjct: 1074 CAISLKGKEENDTHDNNNNNNNIPQIHISTNNVSTNNVPMNIMSSTYPLYTMNKKNLITF 1133

Query: 749  DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            DY Q+EL ++A+++    L ++  N  D+    A  +F  N   V+ ++RR  KT+ + I
Sbjct: 1134 DYKQMELFVMAYLSFDEQLLKLL-NYSDVFIETAKVLFNTN--DVTNELRRMTKTVIYGI 1190

Query: 809  IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RI 867
            +YG +   LA  L I  + A++ I+ +F  FP ++ +++  K  V+    V T+ GR RI
Sbjct: 1191 LYGQTENGLAKSLLISDTLASNLIENFFQFFPNVYRFMQMQKFLVKHMNCVYTLIGRKRI 1250

Query: 868  HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL----------- 916
                I +          R ++N PIQG AADI + +++S    L ++             
Sbjct: 1251 ILPNIKNK--------YRISMNTPIQGCAADIMKFSLLSCFSVLNNNIYNNNKLLKMNNI 1302

Query: 917  -------------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
                          T ++LQ+HDEL+ E   +      Q++   +E A    I
Sbjct: 1303 NPLIIHKNQAFLNPTNLILQVHDELLLESEHDATKYIIQLLNPILENAFYNLI 1355



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 68/141 (48%), Gaps = 2/141 (1%)

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQME 584
           +   I  I++     ++I  +  ++ L+     KL     +L++Y ++++P+I  +S +E
Sbjct: 671 NKRNISDITEEDNICYSISRNCCLILLFEYFINKLEHNINILNLYIKVEQPLILCISHIE 730

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             GI ++Q+ ++++  +    L+  +  I +L     NL+S KQ+  +++ +L   S + 
Sbjct: 731 EKGIFLNQNKIEEIQKKSDDPLI-YKNEIEELCKCNINLNSSKQVSSLIYKQLLDISIST 789

Query: 645 TKTGQWKTTAQDLEQINCGDN 665
             T +    A +       ++
Sbjct: 790 DHTEENMEDADEHTDHQEEEH 810


>gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
 gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
          Length = 646

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 107/659 (16%), Positives = 215/659 (32%), Gaps = 139/659 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T + +      +      ++  +             SV     + G+    
Sbjct: 1   MKTLSIDIETYSDEPLQKTGV---YRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPK 57

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDI 505
           + +L+      ENE  +K   N  ++++ L R+ G     + D    S+          +
Sbjct: 58  EVLLA-----LENETVIKWAFNANFERICLSRFLGYPTGEYLDS--ESW-------RCSM 103

Query: 506 ASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVIL------------ 550
              A   L  + +    +L   K  +   K     + ++  +                  
Sbjct: 104 IWAATMGLPLSLEGVGAVLGLEKQKLSEGK----DLIKYFCQPCAPTKTNGQRTRNRPFH 159

Query: 551 --QLWLLLRP--KLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQV 598
               W + +      VE  + + +RL K  +         +  ++   G+++D +L+   
Sbjct: 160 APDKWAMFKKYNIRDVETEMGIQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAA 219

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
               +++   L E + +++  + N +S +Q+   L            K           E
Sbjct: 220 IEMDTRSRTELTETMKEITELE-NPNSVQQMKAWLSDNGLETDTLGKK--------AVTE 270

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +      + + +   +QL+K       ++   +    +    F    +  TGR +    
Sbjct: 271 LLKSASPKLSQVLTLRQQLAKSSVRKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNI 330

Query: 719 NLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADY 750
            LQN+P                            +   L Q IR AFI     + + AD+
Sbjct: 331 QLQNLPQNHLPDLAEARSLVRSGNFEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADF 390

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSI 808
           S IE R++A  A      +VF    DI+   A+++F V +EK  ++  +R+  K    ++
Sbjct: 391 SAIEARVIAWFAGEKWRQEVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELAL 450

Query: 809 IYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY--------IEKTKNFVRQN 856
            YG S   L    A  + +   E    +  +    P I ++        +E  K     +
Sbjct: 451 GYGGSVGALKAMGALDMGLTEEELPPLVDAWRQSNPNIVKFWWNVDHAVMEAVKFKHTTS 510

Query: 857 GYVETIFGR-----------------------------RIHYDEINSPKSSIR-NINERA 886
            Y  T   R                              I Y+ I   K   R +     
Sbjct: 511 SYGLTFSCRSGMLFITLPSGRKLAYVKPKLGTNKFGGQCITYEGIGGTKKWERLDSYGPK 570

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV-PEEEITTASQII 944
            +   +Q +A DI   AM ++            +++ IHDE+V E  P   +    + +
Sbjct: 571 FVENIVQATARDILCYAMKTLR--------CCSIVMHIHDEVVIEADPRMSLEAVCEQM 621


>gi|218672108|ref|ZP_03521777.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 106

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI--- 57
           M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R   +   
Sbjct: 1   MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
            +H AVIFDY A TFR ++Y  YKANR   PE L+PQ  L+R A
Sbjct: 61  PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREA 104


>gi|239918065|ref|YP_002957623.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|281415754|ref|ZP_06247496.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|239839272|gb|ACS31069.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
          Length = 578

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 146/434 (33%), Gaps = 56/434 (12%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE----------ISKNLLSLEENIYD 615
           L +    +     V +++   G+  D+ + + + AE              L +L E I D
Sbjct: 165 LRLLAAAESQGALVAAEIRAAGLPWDRGVHEALLAEQLGPRPAPGERPARLQALAERIAD 224

Query: 616 LSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           + G    +  S   L   L T        +    +    A   E+       ++  +LE+
Sbjct: 225 VLGSPGLSPDSQPSLLRALQTAGVAVESTRQWDLKHWIDAGGAEREARAA--LLAPLLEY 282

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           + L+++ +       +       R H  Y +   +TGR A+       +P        +R
Sbjct: 283 KALARLWTANGWHWLDQWIGDDGRFHAAYLVGGVVTGRWAAHGGGAMQVPA------GVR 336

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA--AEIFGVNIEK 792
            A  + P   L  AD SQ+E RILA +A    L +    + D++R VA      G  +  
Sbjct: 337 DAVRADPGWTLTVADASQVEPRILAAMAADEVLARA-GTTPDLYREVAEQGRAAGTALAD 395

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
                R  AK      +YG               ++A  +      +P     +E+    
Sbjct: 396 -----RGRAKIALLGAMYGS-----------TTGDSAALMPHLRRLYPRAIGLLERAATV 439

Query: 853 VRQNGYVETIFGRRIHYD--------------EINSPKSSIRNINERAAINAPIQGSAAD 898
               G V T  GR                      S     R    R   N  +QG+AA+
Sbjct: 440 GEGGGQVSTWLGRWSPAPGRKWQESVSDVGTQAAESAARRRRRSQGRFTRNFVVQGTAAE 499

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPK 955
                M  + + L    + T+++  +HDE+V   P  E      ++  S   A       
Sbjct: 500 WALCWMGEIRRRLRSAGMRTELVFFVHDEVVLHGPTTEAEAVRTVVAESASAAGRLLFGP 559

Query: 956 INLRVPLKVNIKVS 969
             +  PL V+  V 
Sbjct: 560 APVDFPLTVS-SVG 572


>gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
 gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
          Length = 644

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 107/619 (17%), Positives = 216/619 (34%), Gaps = 125/619 (20%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMR--GFEDIML-MS 493
           D     T+ +EI+  L     ++  +K   N  +++  ++R+ G+S++  G+    +  S
Sbjct: 48  DIASGQTMPEEIMECL----MDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQAS 103

Query: 494 YV--------------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD-SQV 538
            +              LD  + S     I    +     +    R  ++P D        
Sbjct: 104 MLSLPLSLEGVGEALNLDKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELF 163

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           + + I + +V  Q+   L    I ++   +Y         +  ++   GI +D++L+   
Sbjct: 164 KTYCIRDVDVEKQIRNKLAKFPIPDREQELYC--------MDQRINDRGIMVDRELISNA 215

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            A       +  +  Y++SG + N +S  QL D L          K         A   E
Sbjct: 216 VACDLLYKEAASKRAYEISGLE-NPNSVSQLKDWL--------NEKGIEVDSLAKAAVEE 266

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +   +  + + +     +SK      +++   +    +         +  TGR A    
Sbjct: 267 LVEKTEGEVSEMMKLRLSMSKTSVKKYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLV 326

Query: 719 NLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADY 750
            + N+P                                L + IR AF++ P  + I +D+
Sbjct: 327 QIHNLPQNHMEDLELARSIVKEGRYDLVELLYDSTPEVLSELIRTAFVAKPGCRFIVSDF 386

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM--RRHAKTINFSI 808
           S IE R++ ++A    + + F  +  I+   A+++F + IE+++     R   K  + + 
Sbjct: 387 SAIEARVMGYLAGEGWVMEEFRGAGKIYEQTASKMFHIPIEEITKGSPYRARGKVASLAC 446

Query: 809 IYGISPFRLATQLR---IPRSEAADYIKRYFHRFPGIHEY---IEKTKNFVRQNGYVETI 862
            YG +   L +      +   E    ++ +    P I  Y   I+       +   + T+
Sbjct: 447 QYGGAEGALVSMGALNFVEEEELKGLVQSWRTANPHIVNYWYEIDGAVKAAVKERKMTTV 506

Query: 863 FGRRIHYD----EINSPKSSIRNI-NERAAIN---------------------------- 889
               ++Y     +I  P   + +    R  +N                            
Sbjct: 507 GRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVSYEGVGTNRKWTRIESYGAKF 566

Query: 890 --APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--EEITTASQIIV 945
               +Q +A D+   AM+     LE       ++  IHDE+V EVPE    +   ++I+ 
Sbjct: 567 CENIVQATARDVLAEAMLR----LEKKGFD--IVCHIHDEVVLEVPEGTSSVEEVNEIM- 619

Query: 946 HSMEKACLPKINLRVPLKV 964
                A  P     +PLK 
Sbjct: 620 -----AVCPDWCEGLPLKA 633


>gi|281416299|ref|YP_003347539.1| DNA polymerase [Klebsiella phage KP32]
 gi|262410418|gb|ACY66683.1| DNA polymerase [Klebsiella phage KP32]
          Length = 704

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 130/379 (34%), Gaps = 37/379 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           FN SS   +   L      P+   T  G  K   + LE +   D      I  I E+  +
Sbjct: 334 FNPSSRDHIALKLKEAGWIPT-EFTDKGAPKVDDEVLEHVRVDDPEKQRCIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++ +  + +H   +    +TGR     PNL  +P +++  G+  
Sbjct: 393 QKRIGQAAEGDKAWLRYVQEDGK-IHGSVNPNGAVTGRATHSFPNLGQVPGVRSPYGEPC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          ++       ++  +I
Sbjct: 452 RAAFGAEHHLDGLTGLPWVQAGIDASGLELRCLAHFMSK------YDGGAYADVILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
             VN +      R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTVNQQAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 565

Query: 846 IEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +   V  + +V        +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 REGIQQTLVESSRWVAGEQKVKWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVP-EEEITTASQIIVHSMEKACLP 954
             ++   + L    L          +  +HDE+       E           +M      
Sbjct: 624 LWIVETEELLLKAGLKHGWDGDFAYMAWVHDEIQVACRTPEIAQQVIDTAQQAMRNVG-E 682

Query: 955 KINLRVPLKVNIKVSNNWQ 973
               R  L    K+  NW 
Sbjct: 683 HFKFRCRLDTEGKMGPNWA 701


>gi|218506492|ref|ZP_03504370.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 156

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 107/156 (68%), Gaps = 3/156 (1%)

Query: 508 IAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +++K+L +     K++  S ++++  D +   +   +A E+++V L+LWL+L+P+L    
Sbjct: 1   MSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAG 60

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
           L  VYERL++P++ V+++ME  GI +D+ +L ++S E+++    LE+ IY L+GE+FN+ 
Sbjct: 61  LTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIG 120

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           SPKQLGDILF K+    G+KTKTGQW T+A  LE +
Sbjct: 121 SPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDL 156


>gi|320541049|ref|ZP_08040478.1| putative Ssb-binding protein, misidentified as ExoIX [Serratia
           symbiotica str. Tucson]
 gi|320028888|gb|EFW11138.1| putative Ssb-binding protein, misidentified as ExoIX [Serratia
           symbiotica str. Tucson]
          Length = 174

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 96/174 (55%), Gaps = 1/174 (0%)

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148
           E L  ++P ++ A    G+ +    G EADD+ AT        G  VTIISTDK   QL+
Sbjct: 1   ENLRQEMPQLQQAFAKLGVASWHSPGNEADDLAATLAAKIASGGHQVTIISTDKGYCQLL 60

Query: 149 SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
           +P+  + D  ++  +D+  V +++G+ P+++     L G S   IPG+ GIG KTA  LL
Sbjct: 61  APSVQIRDYFQKRWLDMPFVQQEFGVTPQQLPDYWGLAGISSSKIPGVAGIGPKTAVSLL 120

Query: 209 QEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
           Q+ G+L+ +     ++ +K  R  + ++ E A +S+++  L TD+ +   L+ L
Sbjct: 121 QQMGSLDELYRQLQQVPEKW-RSKLQQHRELAYISKRVATLSTDLTLDGNLQQL 173


>gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 674

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 116/668 (17%), Positives = 224/668 (33%), Gaps = 137/668 (20%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +   + + S  + T +            +    + +D    +    +D S     D    
Sbjct: 13  RWCNLENLSVDLETFS----SVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQG 68

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRG------------- 485
            T+ + +LS L     +E   K   N +++++ L RY    GI++               
Sbjct: 69  ETIPEVVLSALT----DETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNP 124

Query: 486 --FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
             +   M+ S  L    S  ++  +    L   ++++ +  K+ I    +  +  + +  
Sbjct: 125 SSWHCTMIWSATLGLPMSLENVGIV----LGLDKQKLTE-GKNLIKYFCLPCNPTKVNGG 179

Query: 544 ENSNVILQL---WLLLRP--KLIVEKLLHVYERLDKPMIDVVSQMEI--------TGIQI 590
              N        W   +   K  VE  + + E+L +  +      E          GI I
Sbjct: 180 RTRNKYFHDKEKWEQFKSYNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGI 239

Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF-TKLKFPSGAKTKTGQ 649
           D   ++       +    L   +  ++G + N +S  Q+   L    L+  S  K     
Sbjct: 240 DSLFVESAIKLDLEVKTHLMSELKRVTGLE-NPNSVLQMRSWLKKHGLEMESLGK----- 293

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
                +  +++      + + +   +QL+K       ++ N      +    F    +  
Sbjct: 294 ----KEVAKELKTVGKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANR 349

Query: 710 TGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPP 741
           TGR A     LQN+P                            I   L Q IR AFI   
Sbjct: 350 TGRFAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRT 409

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRR 799
             K I AD+S IE R+LA +A      +VF    DI+   A+++F V +EK  V+  +R+
Sbjct: 410 GLKFIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQ 469

Query: 800 HAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEK----TKN 851
             K    ++ YG S   L    A  + +   E    +  +    P +           K 
Sbjct: 470 KGKIAELALGYGGSVGALKAMGALDMGLTEDELQPLVDAWRSSNPMVTTLWWDVDRAVKQ 529

Query: 852 FVRQNGYVETI----------------FGRRIH-----------------YDEINSPKSS 878
            V ++  V T                   R ++                 Y+ + S K  
Sbjct: 530 CVHEHVSVRTHNIVFTYKSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKW 589

Query: 879 IR-NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE-E 936
            R        +    Q  A DI     I   ++L+++    +++  +HDE + E  +   
Sbjct: 590 ERLESYGPKFVENITQAIARDIL----IYAMQTLKEY----RIVAHVHDEAIIETDKSVS 641

Query: 937 ITTASQII 944
           + +  +++
Sbjct: 642 VQSVCELM 649


>gi|296130861|ref|YP_003638111.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109]
 gi|296022676|gb|ADG75912.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109]
          Length = 570

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 149/433 (34%), Gaps = 75/433 (17%)

Query: 556 LRPKLIV------EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI------- 602
           LR +L           L +    +     V ++M+  G+  D     ++  ++       
Sbjct: 153 LRDQLDAVTGATQPGRLRLLLAAESGGALVAAEMQHDGLPWDPVRHDELLTDLLGPRPVG 212

Query: 603 ---SKNLLSLEENIYDL-SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
               + L  L   I +L +    N  S   L   L            +   +  ++    
Sbjct: 213 GGRPRRLEELVTTIRELLADPHLNPDSQPHLLAAL------------RRQGFSLSSTSKW 260

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++   D+P++  +LE+++LS++ S    +  +    R  R    Y +   +TGR A+   
Sbjct: 261 EVRELDHPVVAPLLEYKKLSRLLSANGWAWLDSWV-RDGRFRPAYVVGGVVTGRWATDGG 319

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
               +P        +R A  +    +L+ AD +Q+E R+LA ++    +        D++
Sbjct: 320 GALQLPA------SLRAAARADDGWRLVVADAAQLEPRVLAAMSGDRAMADAAR-GSDLY 372

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
           + +A        +  +   R  AK      IYG                A   + R    
Sbjct: 373 QRIA--------DAGTVPTRTDAKYALLGAIYGA-----------TTGSAGMLMPRLARA 413

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIH------YDEINSPKS------------SIR 880
           +P     +E       +   V T  GR          D + +  +               
Sbjct: 414 YPQAVALVEAAARAGERGETVSTWLGRTSPPASAAFLDRLGAAGAEGADPDDVRDARRRA 473

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITT 939
               R   N  +QG+AA+     + S+ + L +      +++  +HDE+V   P ++   
Sbjct: 474 RDRGRFTRNFVVQGTAAEWALCWLASLRRRLREIGDGRARLVFFLHDEVVVHSPAQDADA 533

Query: 940 ASQIIVHSMEKAC 952
            +  +  + E+A 
Sbjct: 534 VATAVREAAEEAG 546


>gi|154338261|ref|XP_001565355.1| DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062404|emb|CAM42265.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 977

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 133/277 (48%), Gaps = 42/277 (15%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN- 789
             +R  + +PP   L+S D++Q+ELR+LAH++  + L +   +++D+  +V A +  +  
Sbjct: 701 WTLRHLYCAPPGCVLVSFDFNQLELRLLAHLSGDSALQEHLSSNVDVLALVTASVLRLPS 760

Query: 790 IEKVSPQMRRHAKTINFSIIYGISP-------------------------FRLATQLRIP 824
           I+ V P+ R+  K I + ++YG+ P                            A+     
Sbjct: 761 IDHVRPEQRQAVKVIVYGLLYGMGPELMDVRIRKINEEFATAEQQQQHDREGAASSSDPE 820

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            + A D ++R++H +P +  Y+ +T+   + +  VET+ GR+    E ++ +   R I +
Sbjct: 821 SASARDLLRRFYHAYPRVESYLRETRQEAQNSLVVETLSGRKTLLAETDANRRKQRAIAQ 880

Query: 885 RAAINAPIQGSAADITRRAMISVHKS-------LEDHKLATKMLLQIHDELVFEVPEEEI 937
                  +QG AAD+   AM +VH+        L    LA  +++ IHDELV+  P   I
Sbjct: 881 ------AVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA--LVMSIHDELVYATPRVAI 932

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
               + +   +E      + L VPL V+++V +++ E
Sbjct: 933 DEVVRGVQRILEDQAR-VLRLAVPLPVSVRVGHSFGE 968


>gi|288919368|ref|ZP_06413702.1| 5'-3' exonuclease [Frankia sp. EUN1f]
 gi|288349257|gb|EFC83500.1| 5'-3' exonuclease [Frankia sp. EUN1f]
          Length = 304

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 119/275 (43%), Gaps = 21/275 (7%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M     LFL+DG + ++RA + TP      D    +    F  M + LL+ +    + S 
Sbjct: 1   MTTGIPLFLIDGHNLLFRACFGTPAEIYSRDAERRDITTQF--MFFALLRKAVTAELDSW 58

Query: 61  --FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPL--VRLATQAFGIPAIEIQGF 115
               V+FD       R      YKANR        P   L  V+      GI  IEI   
Sbjct: 59  PEILVVFDGEHGSAERQASDAGYKANRDTSDPARRPLEALADVKTGLDLLGIAWIEIDDV 118

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT--------TCLYDTVKE---EKID 164
           EADD+IAT    A      V I+S D+D  QL++ +          + +T +      I 
Sbjct: 119 EADDVIATLAA-ATCAERDVLILSMDQDFYQLLADSDSDGTRQSVRILNTAQRPGSRLIG 177

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
              V+ ++G+ P +   L+AL+GD+ DNIPG+ GIG KTAA LL     LE++  +   I
Sbjct: 178 PADVLARYGVHPAQFADLRALSGDTSDNIPGVRGIGPKTAATLLAGGLALEDLPASGRLI 237

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPL 259
             K     I          R ++ +R DVP+    
Sbjct: 238 GAK--GAAIQAAWPQILTWRAMIRMRRDVPLPRTP 270


>gi|282866382|ref|ZP_06275427.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
 gi|282558778|gb|EFB64335.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
          Length = 568

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 152/445 (34%), Gaps = 85/445 (19%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M  +G+    D+ ++V  E+           + L    + +  
Sbjct: 157 MRLLTASESAGLLVAAEMHRSGLPWRADVHREVLDELLGERYAGGGEPRRLAEAADEVSA 216

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +                 +    ++   D+P ++ ++ ++
Sbjct: 217 AFGRRVRPDLPADVVKA-FAQAGIKV-----------RSTRRWELEKVDHPAVEPLIRYK 264

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           +L ++ + +  S      +   R    Y    T++GR  +       IP        IR+
Sbjct: 265 KLYRVWTAHGWSWLTDWVREG-RFRPEYQPGGTVSGRWTTNGGGALQIPR------VIRQ 317

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           A ++ P  +L+ AD  Q+E R+LA I++   L +V  +  D++  ++   F  +      
Sbjct: 318 AVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHEGDLYTALSDRAFHGD------ 371

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R HAK      +YG +       L                RFP    Y+++      +
Sbjct: 372 --RDHAKIALLGAVYGQTSGDGLKNL-----------AALRRRFPHAVAYVDEAAKAGEE 418

Query: 856 NGYVETIFGRRIH-------------------------------YDEINSPKSSIRNINE 884
              V T  GR                                       S  S  R    
Sbjct: 419 GRLVRTWLGRTSPPAAGAGESEEAGIPQESGDPAPGESAGEYGFTPGYASSDSRARG--- 475

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R   N  +QGSAAD     + ++ ++L   ++  +++   HDE++   P  E     + I
Sbjct: 476 RFTRNFVVQGSAADWALLLLAALRRTLAAGRMRAELVFFQHDEVIVHCPAREAPAVVEAI 535

Query: 945 VHSMEKA---CLPKINLRVPLKVNI 966
             + E A      +  +R P    +
Sbjct: 536 RAAGELAGLTAFGETPVRFPFTTAV 560


>gi|322492142|emb|CBZ27416.1| DNA polymerase theta (polymerase domain only),putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1171

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 94/468 (20%), Positives = 185/468 (39%), Gaps = 53/468 (11%)

Query: 547  NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
              +   +L L      +      E+L      V   M       +++ L  +  +++  L
Sbjct: 708  RAVNIHYLRLLAAQAKQSSCARAEQLRLGCQLVCVWMAYLDRAANRNRLHDMFRKVADKL 767

Query: 607  ----LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT----AQDLE 658
                L    +    +G   + +S  Q+  + ++         T TG+  ++        +
Sbjct: 768  HVCVLEKPRDAAAENGTAVSDASTAQVSRVCYSMHPDWVLHNTSTGRIFSSLPNVQNVPK 827

Query: 659  QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            Q      PI        + S    +      ++++  T+         +     L     
Sbjct: 828  QPPRTAFPIHTLSATPSRNSGGDESLRHY--SYVDPPTE--EDVARWLALAEAALVDQAS 883

Query: 719  NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
            + Q      +    +R  + +PP   L S D++Q+ELR+LAH++    L +    ++D+ 
Sbjct: 884  SAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVL 943

Query: 779  RMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE---------- 827
             +V A +  +  I+ V PQ R+  K I + ++YG+ P  +  +++    E          
Sbjct: 944  ALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEFATSEQQQHH 1003

Query: 828  --------------AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873
                          A D ++R+ H +P I  Y+ +T+    ++  VET+ GR+    E +
Sbjct: 1004 RGGEASSPGPAPMSAHDLLRRFHHVYPRIESYLRETRQEALRSFAVETLSGRKSLIAEKD 1063

Query: 874  SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS-------LEDHKLATKMLLQIHD 926
            + +   R I +       +QG AAD+   AM +VH+        L    LA  +++ +HD
Sbjct: 1064 ANRRRQRAIAQ------AVQGGAADVLHSAMRAVHQQRHSFLPYLPAATLA--LVMSVHD 1115

Query: 927  ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ELV+ VP   I    + +   +E      + L VPL V ++V  ++ E
Sbjct: 1116 ELVYAVPRAAIEEVVRGVQRVLEDQAR-VLRLAVPLPVTVRVGYSFGE 1162


>gi|330469036|ref|YP_004406779.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
 gi|328812007|gb|AEB46179.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
          Length = 548

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 146/425 (34%), Gaps = 72/425 (16%)

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYDLSG-EKF 621
           +     + ++M   G+    D+   + AE+           + L  L   I +  G  + 
Sbjct: 157 ESAGALIAAEMGAAGLPWRADVHDAILAELLGEPSPVGGPPRRLADLAAQIAEAFGVRQV 216

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           +  SP +L    F +                       +   D+P +  +LE+++L +I 
Sbjct: 217 HADSPAELLRA-FARAGIDLP-----------NTRSWVLRGVDHPAVPLVLEYKELYRIW 264

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           + +  +  +    R  R    Y     ++GR A+       IP        IRRA ++ P
Sbjct: 265 TAHGRAWRDAWV-RDGRFQPEYVPGGVVSGRWATRGGGALQIPK------VIRRAAMADP 317

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             + + AD  Q+E R+LA ++    L        D+++ +A + FG +        R  A
Sbjct: 318 GWRFVVADAGQLEPRVLAAVSGDARLAAAGATG-DLYQALARDAFGGD--------RGRA 368

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K      +YG +             EA   +      +P    Y+E         G V +
Sbjct: 369 KLALLGAMYGQTG-----------GEAVPALAGVRGNYPTAFGYVEAAARTGEAGGLVRS 417

Query: 862 IFGRRIHYDEIN-----------------SPKSSIRNINERAAINAPIQGSAADITRRAM 904
             GR                         SP++       R   N  IQ +AA+     +
Sbjct: 418 WLGRTCPPGSAGFATDEGVADPDAAGDPQSPRARAARSRGRFTRNFVIQATAAEWASTLL 477

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVP 961
             +   L       +++   HDE++   P E+    ++ +  +  +A         +R P
Sbjct: 478 AVLRGEL--AGTEAELVFFQHDEVIVHCPAEQAERVAEAVQRAGRRATVLLFGDTPVRFP 535

Query: 962 LKVNI 966
           L ++I
Sbjct: 536 LDLSI 540


>gi|29566249|ref|NP_817817.1| gp56 [Mycobacterium phage Rosebush]
 gi|29424974|gb|AAN01898.1| gp56 [Mycobacterium phage Rosebush]
          Length = 609

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 104/529 (19%), Positives = 185/529 (34%), Gaps = 86/529 (16%)

Query: 461 HFLKIGHNIKYDKLVLHRYGI----SMRGFEDIMLMSYVLDSGR-----SSHDIASIAQK 511
               + HN  +D   L  +G+     +R   D +L++                + + A  
Sbjct: 96  ASKLVFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVH 155

Query: 512 WLSYTRKEILKSRKSSIPID------------KISDSQVQEHAIENSNVILQLWLLLRPK 559
            L     ++    + +                 I     ++ A+ ++   L L  +LR K
Sbjct: 156 LLGLV--DVAGGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRK 213

Query: 560 LIV---------------EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
            +                 + L V E  +     V+ Q    G+ +D+D L +    E  
Sbjct: 214 CVEWTTSHPFAEFGATTEAEALEVLEVQEIAH-WVMLQRSARGLAVDRDYLDEYREREHD 272

Query: 604 KNLLSLEENI-YDLSGEKFNLSSPKQLGDILFTKLKFPS-GAKTKTGQWKTTAQDLEQIN 661
           K L        YDL G          L   L  + + PS   +T  G      + LE + 
Sbjct: 273 KRLEHAAFLAQYDLEGGT---GKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETL- 328

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D+P+        Q  K+   Y + +        +       L ++ TGR++   P LQ
Sbjct: 329 --DHPVAAAQRALAQSDKVLG-YLEKVSRQAAVTGRCHPQVAILGASATGRMSYGSPELQ 385

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ-VFENSLDIHRM 780
             P       K  R  I    + L S D++QIE   +A +A         FEN  D++  
Sbjct: 386 QFP-------KDARPIIVDDGQGLTSVDWAQIEPVTMALMAGDREFLAPFFENDADLYEP 438

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           +     G++        R  AK I  + +YG     +A ++      AA   ++     P
Sbjct: 439 I-MRACGID--------RPMAKVILLATMYGQGARSMARRIGHTEESAAQIRRQMLAAMP 489

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
              +++ K ++    +G + T  GR +  D+  S            A+N   QGSA D+ 
Sbjct: 490 ASRDFMAKVESIAITHGRIVTGGGRILPVDQQGS----------YRAVNYICQGSAYDVL 539

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
              ++     L++  L+  + L +HDELV +         +  + H M 
Sbjct: 540 AHTIVR----LDEAGLSGHVQLAMHDELVVDT------DVAAEVEHIMM 578


>gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4]
 gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4]
          Length = 513

 Score =  159 bits (402), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 90/505 (17%), Positives = 173/505 (34%), Gaps = 73/505 (14%)

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
            L R G+ +R   D+ L   VL                   + ++ + +  +  P+D+  
Sbjct: 60  ALLRAGVRVRRCHDLALTHAVL-------------------SMRDGVPAPPADEPVDERP 100

Query: 535 -DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                   A  +   ++  +   R  +  +  L +    +       ++M   G+    D
Sbjct: 101 GLFDTAPTA--DPAQVVTDFAEQRKTIGADAKLDLLVAAESAGALAAAEMGFDGLPFSTD 158

Query: 594 LLKQVSA----------EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
             +              ++ + +  +   I    G + N +S  ++ D  F +      +
Sbjct: 159 SHRAFLEATLGPRPAGYDLPQRIQDVSVEIGAAFGRRINPASHVEVVDA-FRREGIELAS 217

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
             K             +   D+P +  +L  R LSK+ ST      +    R  R    Y
Sbjct: 218 TRK-----------HLLREVDHPAVPLLLHHRDLSKLFSTNGWQWLDSWV-RDNRFRPVY 265

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
                ++GR AS       IP        +R + I+ P    + AD  Q+E RILA ++ 
Sbjct: 266 VPGGVVSGRWASRGGGALQIPKP------LRSSVIADPGHTFVIADAGQLEPRILAAMSG 319

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
            T +      + D++  VAAE F  +        R  AK     ++YG +          
Sbjct: 320 DTRMVAA-AGADDLYAPVAAETFDGD--------RGKAKVAILGVLYGATA--------- 361

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
              EA   +     RFP   EY+E+      +   V +  GR       +          
Sbjct: 362 --GEARSLLTLLRTRFPVAVEYVERAARAGERGEVVHSWLGRACPPPSPDFWSHGDARSR 419

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
            R   N  +Q +A++     +  + + L D    ++++   HDE++      E  T   +
Sbjct: 420 GRFTRNFVVQATASEWALCVLADLRRRLADEP-DSELVFFQHDEVMVHTRNPESATRHVL 478

Query: 944 -IVHSMEKACLPKINLRVPLKVNIK 967
             V    +    +  +R P+ V ++
Sbjct: 479 GAVDVATRLLFGETRVRFPMDVAVR 503


>gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 662

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 126/675 (18%), Positives = 229/675 (33%), Gaps = 151/675 (22%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T +            +    +       +    ID       D      + 
Sbjct: 1   MKTISIDIETFS----DVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRGFED-------------- 488
            +IL  L     +E   K   N  ++++ L RY     IS+  F D              
Sbjct: 57  DDILDALT----DESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNP 112

Query: 489 -----IMLMS-YV--------------LDSGRSSHDIASIAQKWLSYTRKE--ILKSRKS 526
                 M+ S Y+              LDS +       I  ++     KE  +   R  
Sbjct: 113 AGWKCSMIWSAYMGLPLSLEGAGAVLKLDSQKMKEGKDLI--RYFCVPCKETKLNGGRTR 170

Query: 527 SIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           ++P       +  + +   +  V + +   L+   + E +   Y         +  ++  
Sbjct: 171 NLPRHAPDKWTLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYH--------LDQEIND 222

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI ID+ L +      +++  SL   +   +G + N +S  Q+   L        G KT
Sbjct: 223 RGIAIDRTLAENAIVIDARSRDSLMAVLKGKTGLE-NPNSVIQMIGWLEQH-----GMKT 276

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            +   K   Q  E +   + P+   +L  ++L+K       ++     + ++    F   
Sbjct: 277 DSLGKK---QVQELLKTAEEPLRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFY 333

Query: 706 ASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAF 737
            +  TGR A     LQN+P                            I   L Q IR AF
Sbjct: 334 GANRTGRFAGRHIQLQNLPQNHLPDLAEARELVRQGNYEALELLYDSIPDVLSQLIRTAF 393

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSP 795
           +     K + +D+S IE R+L+ +A  T    VF  + DI+   A+ +FGV +EK  V+ 
Sbjct: 394 VPRKGMKFVVSDFSAIEARVLSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNG 453

Query: 796 QMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            +R+  K    ++ YG S   L    A  + +  +E    ++ +    P I ++  +   
Sbjct: 454 HLRQKGKIAELALGYGGSTGALKAMGALDMGLTENELYPLVQSWRSANPHIVDFWWQVDA 513

Query: 852 FVR------------------QNG--YVETIFGRRI-----------------HYDEINS 874
            V+                  Q+G  +++   GRR+                  Y+ I +
Sbjct: 514 TVKTAIKEQIPMRAGCIRFLCQSGMLFIQLPSGRRLSYVKPRIGENRFGGESVTYEGIGA 573

Query: 875 PKSSIR-NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
            K   R        +   +QG + DI   AM ++            ++  +HDEL+ E  
Sbjct: 574 TKKWERLESYGPKFVENIVQGISRDILCYAMQTLR--------CCAIVGHVHDELIIECS 625

Query: 934 EEEITTASQIIVHSM 948
            +    A   I   M
Sbjct: 626 RDASVDA---ICEQM 637


>gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
 gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
          Length = 649

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 215/641 (33%), Gaps = 134/641 (20%)

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            I T              +    Q DD    +     D S     D      +   ILS 
Sbjct: 10  DIET----YSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLILSA 65

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-----G--ISMRGFEDIML-MSYV--------- 495
           L    E++  +K  HN  ++++   R+     G  IS   +   M   +Y+         
Sbjct: 66  L----EDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGV 121

Query: 496 -----LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD-SQVQEHAIENSNVI 549
                L   + +     I       +  +   +R  ++P D      + + + I +    
Sbjct: 122 GAVLGLGKQKMTEGKDLIRFFCGPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAE 181

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ---VSAEISKNL 606
           +++   L    + + +   Y   +        ++  +GI++D D +KQ   ++      L
Sbjct: 182 MEIEQKLIKFPVPDFIWDEYHLSE--------RINDSGIKVDMDFVKQAIAMNEISHTKL 233

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           +   + I +L     N +S +Q+ D L            K           E +      
Sbjct: 234 MDQMQEITELD----NPNSVQQMKDWLSDNGLETDTLGKK--------AVAELLKDAPEH 281

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-- 724
           + + +   +QL+K       ++ N +    +    F  L +  TGR +S    LQN+P  
Sbjct: 282 LAEVLKLRQQLAKSSVKKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQN 341

Query: 725 --------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
                                     I   L Q IR AF+     K I AD+S IE R+L
Sbjct: 342 HMMDLKEARSIVKNGDSEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVL 401

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFR 816
           + +A      +VF N  DI+   A+++F V +EK  V+  +R+  K    ++ YG S   
Sbjct: 402 SWLAGEQWRNEVFANGGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGA 461

Query: 817 L----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG--------------- 857
           L    A ++ +   E    +  +    P I ++       V++                 
Sbjct: 462 LKAMGALEMGLEEEELKPLVNAWRASNPNIVKFWWDVDREVKKCIKEKKSQEVQNIKFHY 521

Query: 858 -----YVETIFGRRI-----------------HYDEINSPKSSIR-NINERAAINAPIQG 894
                ++    GR++                  Y+ + + K   R        +   +Q 
Sbjct: 522 MSGMLFIVLPSGRKLAYVKPNIGENIFGGESVTYEGVGATKKWERIESYGPKFVENIVQA 581

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            + DI   AM ++            ++  +HDE++ E  + 
Sbjct: 582 ISRDILMYAMKTLS--------TCSIVAHVHDEVIIEADQS 614


>gi|312601528|gb|ADQ90783.1| 5'-3' exonuclease [Mycoplasma hyopneumoniae 168]
          Length = 261

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/263 (30%), Positives = 128/263 (48%), Gaps = 13/263 (4%)

Query: 35  VNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ 94
             A+  F + ++KLL+  R ++        FD+ A T R+++YPDYK  R K P+ L  Q
Sbjct: 2   TFAVHIFFSSVFKLLKLLRPDN----VYFAFDFGAKTPRHQMYPDYKKGRIKPPDSLFFQ 57

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF--AVTIISTDKDLMQLVSPTT 152
           +  ++           E Q FEADD+IA+     +K+     + I S D+DL+QLV   T
Sbjct: 58  MDQIKKILSLANFLWSEHQDFEADDLIASLKKKIQKKDNEAEILIFSADQDLLQLVDKKT 117

Query: 153 CLYDTVKEEKIDI---EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
            +   +K   I+I   E+  + +G  P +++  + L GD  DNI  I G+G KTA  LL+
Sbjct: 118 KVITKIKNNFININTQENFYESYGFSPSQVIDFKVLAGDVSDNIKVIEGLGKKTAIKLLE 177

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL-EHLILEDCN 268
           +Y NL+NIL+N  +I Q K    I +  +     +  + L         + + L ++   
Sbjct: 178 KYKNLDNILLNLDKINQ-KIANQINQKIKQLLFFKNFIKLNDKANFDFDIFQKLDIKI-- 234

Query: 269 GPRLISFLKALEFTKLINRVATT 291
            P L+  L  LE  K+   +   
Sbjct: 235 SPLLVEILNELELKKVYENLTEL 257


>gi|29831179|ref|NP_825813.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29608293|dbj|BAC72348.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 564

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 142/423 (33%), Gaps = 85/423 (20%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ + +  E+           + L  L + +  
Sbjct: 156 MRLLTATESAGMLVAAEMNAAGLPWRADVHRDLLNELLGERYAGGGEPRRLAELTDEVSA 215

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +                 +    +I   D+P +K +LE++
Sbjct: 216 AFGRRVRPDLPTDVVKA-FAQAGIKV-----------RSTRRWEIESVDHPAVKPLLEYK 263

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I   +    L + +  R  R    Y    T+TGR  +       IP        IR
Sbjct: 264 KLYRIWVAHGWSWLQDWV--RDGRFRPEYLPGGTVTGRWVTNGGGALQIPK------VIR 315

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++ P  +L+ AD  Q+E R+LA I++   L +V     D+++ V+   F  +     
Sbjct: 316 RAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAFSGD----- 370

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      IYG +       L                RFP    Y++       
Sbjct: 371 ---RAQAKLAVLGAIYGQTSGDGLKNL-----------AALRRRFPKAVAYVDDAARAGE 416

Query: 855 QNGYVETIFGR------------------------------RIHYDEINSPKSSIRNINE 884
           +   V T  GR                              +       S  S  R    
Sbjct: 417 EGRLVRTWLGRTSPPAAGASEDSAEEAGIPQDEPAPSSGAAQEWMPGYASTNSRARG--- 473

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           R A N  +QGSAA      ++          LA +++   HDE++   P EE  T    I
Sbjct: 474 RFARNFVVQGSAA--DWALLLLAALRRACAGLAAELVFFQHDEVIVHCPAEEADTVVAAI 531

Query: 945 VHS 947
             +
Sbjct: 532 REA 534


>gi|119960534|ref|YP_949044.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119947393|gb|ABM06304.1| putative DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 563

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 100/565 (17%), Positives = 204/565 (36%), Gaps = 90/565 (15%)

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVL-DSGRSSHDIASIAQKWLSY 515
            E +    + H  +     L  +GI +    D+ L   +L  S  ++H     A+  +  
Sbjct: 42  LEVQRPRWVWHRAQDWCSELLTHGIELERCHDLALCGAILAHSEFTAHT--DYAKHAVKL 99

Query: 516 TRKEI-----------LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           T+ +              + + ++  D    +     A        Q   +   ++  E 
Sbjct: 100 TQDDDSTPPRVLQPPPPPADQGALFEDLAPSNPKAGLAELREEFAAQQHAV--SQVTTEH 157

Query: 565 LLHVYERL----DKPMIDVVSQMEITGIQIDQDLLKQVSAEISK----------NLLSLE 610
                 +L    +     +  +M+  G+   ++L +Q+ A++             L +L 
Sbjct: 158 QQRQRLQLLLAAESACAIIAVEMQHAGVPWREELHQQILADVLGPRPPLGHRPPALEALC 217

Query: 611 ENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
             + ++      N  SP+ L   L                 +  +    ++    +P I+
Sbjct: 218 AELRNILNSPSLNPDSPQDLMRAL------------HRNGIEVKSTRQWELQESKHPAIQ 265

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
            +L +++LS++ +    S  +    R  R H  Y +   ++GR AS       IP     
Sbjct: 266 PLLAYKKLSRLHTANGWSWLDAWV-RDGRFHPEYVVGGVVSGRWASRGGGALQIPR---- 320

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
              IR A  + P  KLI AD SQ+E R+L  +A+ T + +   +  D++  +AA+ FG +
Sbjct: 321 --NIRAAVHADPGHKLIVADASQLEPRVLVALAQDTKMAEAARD-KDLYAGIAAQGFGGD 377

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
                   R  AK      +YG               E+   + +    +P    ++E+ 
Sbjct: 378 --------RAKAKIALLGAVYGA-----------TTGESGRLMPQLTRTYPRAVGFVEQA 418

Query: 850 KNFVRQNGYVETIFGRRIHYD---EINSPKSSIRNINERAA----------INAPIQGSA 896
                    V T  GR         + S +S+      RA            N  +QGSA
Sbjct: 419 AREGEAGRTVTTRLGRSSPPPSAGWLRSQQSTTAEEQRRADNLARSRGRFTRNFVVQGSA 478

Query: 897 ADITRRAMISVHKSLEDHKL----ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           A+     +  + + L   +     A +++  +HDE++   P++ +      I      A 
Sbjct: 479 AEWAACWLAELRRRLRALRAEGSAAGELVFFLHDEVMVHAPDDAVDACISAI-EEAATAA 537

Query: 953 LPKINLRVPLK--VNIKVSNNWQEE 975
              +  R+P++  V++ V +++ + 
Sbjct: 538 KELMFGRIPVEFPVSVAVVDSYDKA 562


>gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 565

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 92/524 (17%), Positives = 169/524 (32%), Gaps = 73/524 (13%)

Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPID 531
            L   G+ +    DI     +L      H          +  R           S+ P  
Sbjct: 75  ALLAAGVRVERCYDIEAAETLLLGHEGRHGQPRALAAAWARLRDAPVPEDPPGPSAEPDA 134

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQ 589
           + S  + +   +    V       LR            +    +     V +++  TG+ 
Sbjct: 135 QSSLFEARPAPLPPEAVAGVYAEQLRRHAKTGHPGRFTLLTGTESAATLVAAELNATGLP 194

Query: 590 IDQDLLKQVSAEI----------SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
              +  +++  E+           + L  L E +    G       P  +          
Sbjct: 195 WSAERHRELLRELLGERYAGGGEPRRLAELTEEVSRAFGRHVRPDLPADVLRAFAES--- 251

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD-SLPNHINKRTQR 698
                      K T+    ++    +P +  +L +++L ++ + +    L + + +   R
Sbjct: 252 ---------GVKLTSTRRWELEKVGHPAVAPLLAYKKLYRVWTAHGWGWLADWVREG--R 300

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
               Y +   ++GR  +       IP        +RRA ++ P  +L+ AD +Q+E RIL
Sbjct: 301 FRPRYVVGGAVSGRWTTAGGGALQIPK------VVRRAVVADPGWRLVVADAAQMEPRIL 354

Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           A +A    L  V   + D++  V+   F  +        R  AK      IYG +     
Sbjct: 355 AAVAGDAGLLDVAAKADDLYAAVSDRAFAGD--------RDRAKIAVLGAIYGQTSGDGL 406

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH---------- 868
             L                RFP    Y+++      +   V T  GR             
Sbjct: 407 KNL-----------AALRRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPVGGEDPGEA 455

Query: 869 -YDEIN--SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
              + +  +P  S      R   N  +QG+AAD T   + +          A +++   H
Sbjct: 456 GIPQEDEPAPSPSASRARGRFTRNFVVQGAAADWTLLLLAA--LRRALRARAAELVFFQH 513

Query: 926 DELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKVNI 966
           DE++   P  E      +I  +  +A   C   I LRVP    +
Sbjct: 514 DEVIVHAPAAEAAEIPALIAEAAREATRVCFGDIPLRVPFTTAV 557


>gi|153840366|ref|ZP_01993033.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149745971|gb|EDM57101.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 166

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 14/172 (8%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           S   I+   Y  I++      W++KL+     +F   TD++D   +  + ++ +  D+  
Sbjct: 4   SAVTIDRSQYETILDEASFNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAI-DEGI 62

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                V   ++D      +D          +L  LK   E++   K+G N+KYD  VL R
Sbjct: 63  AAYVPVAHDYLDAPEQLDRD---------WVLEQLKPILEDDAQAKVGQNLKYDASVLAR 113

Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526
           YGI M+G   D ML SYV +S    HD+ S+A ++L +   + ++I    K+
Sbjct: 114 YGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKT 165


>gi|308403489|ref|ZP_07493848.2| hypothetical protein TMLG_03582 [Mycobacterium tuberculosis
           SUMu012]
 gi|308365714|gb|EFP54565.1| hypothetical protein TMLG_03582 [Mycobacterium tuberculosis
           SUMu012]
          Length = 240

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 24/188 (12%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R   +A    +
Sbjct: 58  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 117

Query: 64  IFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIPAIE 111
            +      FR ++ P YKA+R             ++P+ L PQ+ ++     AFGI    
Sbjct: 118 DW---RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAG 174

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-------YDTVKEEKID 164
             GFEADD++ T      +    V ++S D+DL+Q+V+                K     
Sbjct: 175 APGFEADDVLGTLATR--ERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFG 232

Query: 165 IEHVIKKW 172
              V +++
Sbjct: 233 PAEVAERY 240


>gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 662

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 119/685 (17%), Positives = 227/685 (33%), Gaps = 139/685 (20%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T              +    +  D    +     D S  T  D      L 
Sbjct: 1   MQTLSIDIET----YSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRGFED-----IMLMSYVLD 497
           ++I+  L     ++  +K   N  ++++ L RY    G+S+  F D          + L+
Sbjct: 57  QKIIDALT----DDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARF-LN 111

Query: 498 SGRSSHDIASIAQKWLSYTRKEILK----------SRKSSIPIDKISDSQVQEHAIENSN 547
                  +   A   L  + + +              K  I    +  +  + +     N
Sbjct: 112 PESWRCSMVWAATMGLPLSLEGVGAVLGLEKQKLTEGKDLIKYFSVPCAPTKANGGRTRN 171

Query: 548 VILQ---LWLLLRP--KLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDL 594
                   W   +      VE  + + +RL K  +         +  ++   G+++D DL
Sbjct: 172 HPFHAPDKWEAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDL 231

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGAKTKTGQWKTT 653
           +K+     +++   L   + D++    N +S +Q+   L    L+  S  K         
Sbjct: 232 VKEAIEMDTRSRSELTAAMKDMTALD-NPNSVQQMKQWLSDNGLETDSLGK--------- 281

Query: 654 AQDLEQINCGDNPIIKNILEW-RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            + + ++     P ++ +LE  +QL+K       ++   +    +    F       TGR
Sbjct: 282 -KVVAELIKTAPPELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGR 340

Query: 713 LASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKK 744
            A     LQN+P                            +   L Q IR AFI     +
Sbjct: 341 WAGRLIQLQNLPQNHLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQ 400

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAK 802
              +D+S IE R++A  A  T   +VFE   DI+   A+++F V +EK  ++  +R+  K
Sbjct: 401 FYVSDFSAIEARVIAWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGK 460

Query: 803 TINFSIIYGISPFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEY--------IEKTK 850
               ++ YG S   L       + +   E    +  +    P I ++        +E  K
Sbjct: 461 IAELALGYGGSVGALKAMGAIEMGLSEDELPPLVDAWRQTNPNIVKFWWDVDRSVMEAVK 520

Query: 851 NFVRQNGYVETIFGR-----------------------------RIHYDEINSPKSSIR- 880
                + Y  T   R                              + Y+ I S K   + 
Sbjct: 521 YKHTTSSYGLTFSCRSGMLFITLPSGRNLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQL 580

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
           +      +   +Q ++ DI   AM ++            +++ IHDELV E         
Sbjct: 581 DSYGPKFVENIVQATSRDILCYAMKTLR--------CCSIVMHIHDELVIEADPHMSLDV 632

Query: 941 SQIIVHSMEKACLPKINLRVPLKVN 965
              +   M +       L+  L+ +
Sbjct: 633 ---LCEQMGRTPPWAKGLK--LRAD 652


>gi|302553133|ref|ZP_07305475.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302470751|gb|EFL33844.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 560

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 155/444 (34%), Gaps = 87/444 (19%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M  +G+    ++ + V  ++           + L  L + +  
Sbjct: 153 MRLLTAAESAGMLVAAEMNRSGLPWRAEVHRAVLHDLLGERYAGGGEPRRLAELADEVST 212

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +      +  K            +I   D+P +K +LE++
Sbjct: 213 AFGRRVRPDLPADVVKA-FAQAGIKVSSTRK-----------WEIESVDHPAVKPLLEYK 260

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I   +    L + + +   R    +    T+TGR  +       IP        IR
Sbjct: 261 KLYRIWVAHGWSWLQDWVREG--RFRPEFLAGGTVTGRWVTNGGGGLQIPK------VIR 312

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++ P  +L+ AD  Q+E R+LA I++   L +V     D+++ V+   F  +     
Sbjct: 313 RAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVSDRAFSGD----- 367

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG +       L                RFP    Y+++      
Sbjct: 368 ---RAQAKLAVLGAVYGQTSGDGLKNL-----------AALRRRFPRAVAYVDEAARAGE 413

Query: 855 QNGYVETIFGRRIH-----------------------------YDEINSPKSSIRNINER 885
           +   V T  GR                                     S  +  R    R
Sbjct: 414 EGRLVRTWLGRTCPPAARATDEAAEEAGIPLSEDDTQRDAQQWVPGYASTNARARG---R 470

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A N  +QGSAAD     + ++ K+  +  L+ +++   HDE++   PEEE       I 
Sbjct: 471 FARNFVVQGSAADWALLLLAALRKTCAE--LSAELVFFQHDEVIVHCPEEETAAVVTAIR 528

Query: 946 HSMEKAC---LPKINLRVPLKVNI 966
            +   A      +  +R P    +
Sbjct: 529 EAAALAGRLTFGETPVRFPFTTAV 552


>gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
 gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
          Length = 646

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 106/600 (17%), Positives = 200/600 (33%), Gaps = 124/600 (20%)

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFED-- 488
           SV   +        ++ I S +     ++   K   N +++++ L    G+    + D  
Sbjct: 38  SVDGGEVQVVDLMCSEAIPSKVVDALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPM 97

Query: 489 ----IMLMS-YV--------------LDSGRSSHDIASIAQKWLSYTRKEIL--KSRKSS 527
                M+ S Y+              L+  + +     I  +  S   K  +  + R  +
Sbjct: 98  SWRCTMVWSAYMGLPLSLEGTGAVLGLEKQKLTEGKDLI--RHFSVPCKPTVSNEGRTRN 155

Query: 528 IPIDKISD-SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +PI      +  + + + +    + +   L    + E +   Y         +  ++   
Sbjct: 156 LPIHAPDKWAAFKAYNLRDVETEMAIQQKLAKFPVPEGVWGEYH--------LDQEINDR 207

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
           G+ +D DL++Q     +++   L   I +L+  + N +S  Q+   L            K
Sbjct: 208 GVALDMDLVRQAIEMDNRSRSKLTGMIRELTELE-NPNSVVQMKQWLSDHGLETDTLGKK 266

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706
                     +E +     P+ K +   + L+K       ++ N +    +    F    
Sbjct: 267 --------AVVELLKTASEPLGKVLELRQSLAKSSVKKYTAMENVVCTDGRARGMFQFYG 318

Query: 707 STMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAFI 738
           +  TGR A     LQN+P                            +   L + IR AF+
Sbjct: 319 ANRTGRWAGRLIQLQNLPQNHMPDLEQARSLVRSGNFAALEMLYDSVPEVLSELIRTAFV 378

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQ 796
                K I AD+S IE R++A +A      +VFE+  DI+   A+++F V +EK  V+  
Sbjct: 379 PKKGCKFIVADFSAIEARVIAWLAGEKWRQEVFESGGDIYCASASQMFHVPVEKNGVNGH 438

Query: 797 MRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           +R+  K    ++ YG S   L    A ++ +   E    +  +    P I          
Sbjct: 439 LRQKGKIAELALGYGGSVGALKAMGALEMGLEEEELQPLVSAWRSSNPKIVRLWWDIDRA 498

Query: 853 V----RQNGYVETIFGR----------------------------RIHYDEINSPKSSIR 880
                R+    ET   R                            R   D I        
Sbjct: 499 AMKAVRERTTTETHGIRFSYQSGMFFITLPSGRRLAYVKPRIGQNRFGSDCITYEGVGGA 558

Query: 881 NINERAAINAP------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
              ER     P      +Q ++ DI   AM ++            +++ +HDE+V E   
Sbjct: 559 KKWERIESYGPKLTENIVQATSRDILCYAMRNLR--------HCSIVMHVHDEIVIEADR 610


>gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
 gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
          Length = 644

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 112/662 (16%), Positives = 223/662 (33%), Gaps = 127/662 (19%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + S  I T +            +    +  D    +    +D       D      + KE
Sbjct: 3   TLSIDIETFS----SVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKE 58

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG--FEDIMLMSYVLD-------- 497
           I   +     + +  K   N +++++ L +Y GI +    +   M+ S  L         
Sbjct: 59  IQQAIL----DNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGA 114

Query: 498 SGRSSHDIASIAQ-----KWLSYTRKEILKSRKSSIPIDKISDSQ---VQEHAIENSNVI 549
           +  +  D   + +     ++ S   K  + +   +  + + +  +    + + + +  V 
Sbjct: 115 AIVTGADKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVE 174

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           L +   L+   + E+  + Y         +  Q+   GIQ+D +L+K+      K    L
Sbjct: 175 LSIQEKLQKFPMPEEEWNNYI--------LDQQINDRGIQLDLELVKKAIQCDEKVREEL 226

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
              + +L+    N +S  Q+   L  K         +T      +         ++  + 
Sbjct: 227 TSRLKELTDLD-NPNSVVQMKSWLSEKGL-------ETDSLDKASVKALLKEAPEH--LS 276

Query: 670 NILEWRQL-SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---- 724
            +LE RQL +K       ++ N +    +         +  TGR A     +QN+P    
Sbjct: 277 EVLELRQLLAKSSVKKYTAMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHL 336

Query: 725 ------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
                                   I   L + IR AF+     K I AD+S IE R++A 
Sbjct: 337 SDLEQARRLVRGGHFDALEILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAW 396

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--PQMRRHAKTINFSIIYGISPFRL- 817
           +A  T   +VF     I+   A+++F V +E+V+    +R+  K    ++ YG S   L 
Sbjct: 397 LAGETWRNEVFATHGKIYEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALK 456

Query: 818 ---ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ--NGYVETIFGRRIH---- 868
              A  + +   E    +  + +  P I          V++       T   R       
Sbjct: 457 AMGALDMGLTEEELKPLVYAWRNANPNIVRLWWDVDRAVKEAVTERCRTETHRIRFEYRS 516

Query: 869 -------------------------------YDEINSPKSSIR-NINERAAINAPIQGSA 896
                                          Y+ + + K   R        +   +Q  +
Sbjct: 517 GMLLIWLPSGRQLTYVKPRMGINSFGSEAVTYEGVGATKKWERIESYGPKFVENIVQAIS 576

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
            D+   +M    ++L++  L   +++ +HDE+V EVP   +    Q +   M +      
Sbjct: 577 RDLLCHSM----RNLDESGLN--IVMHVHDEVVLEVP---LEICVQDVCVLMGQVPPWAH 627

Query: 957 NL 958
            L
Sbjct: 628 GL 629


>gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum]
          Length = 158

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 94/157 (59%), Gaps = 4/157 (2%)

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSG 499
                  ++ L  LK   E+E  LK+  N+KYD L+L RYGI  R F+D ML+SYVL+  
Sbjct: 2   ADNQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFDDTMLISYVLEPA 61

Query: 500 RSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            + H +  +++K+L +     K++  S K+++  D +   +   +A E+++V L+LWL+L
Sbjct: 62  PARHGMDPLSEKFLGHTPIPYKDVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVL 121

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +P      L  VYERL++P++ V+++ME  GI +D+ 
Sbjct: 122 KPG-CARGLTSVYERLERPLLPVLARMEARGITVDRQ 157


>gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 119/651 (18%), Positives = 217/651 (33%), Gaps = 134/651 (20%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T              +    +  D    +     D       D     T+ 
Sbjct: 1   MKTLSIDIET----YSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-----GISMRGF---EDIMLMSYVLDS 498
           +E+++ L     N++  K   N +++++ L R+     G     +   ED  + +Y LD 
Sbjct: 57  QEVIAALT----NDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDT-VGNY-LDP 110

Query: 499 GRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAI------------ 543
                 +   A   L  + +    +L   K  +   K       +               
Sbjct: 111 ASWKCTMIWSAYMGLPLSLEGVGAVLGLGKQKLTEGKELIKYFCQPCAPTKANSGRTRNL 170

Query: 544 -ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT--------GIQIDQDL 594
            EN+      +     +  VE  + + E+L K  +  V   +          G+ +D DL
Sbjct: 171 PENAPDKWASFKRYNAR-DVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDL 229

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGAKTKTGQWKTT 653
           ++Q     +++   L   +  L+    N +S +Q+   L    L   S  K         
Sbjct: 230 VRQAIDMDTRSRAELTAAMKKLTALD-NPNSVQQMKQWLSDNGLNVDSLGK--------- 279

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            +  E +      + + +L  +QL+K       ++   +    +    F    +  TGR 
Sbjct: 280 KEVAEMLKTAPAELQQVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRW 339

Query: 714 ASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKL 745
           A     +QN+P                            +   L Q IR AF+  P  K 
Sbjct: 340 AGRIIQMQNLPQNHLPDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVPRPGYKF 399

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKT 803
           I +D+S IE R+LA  A  T   +VFE   DI+   A+++F V +EK  V+  +R+  K 
Sbjct: 400 IVSDFSAIEARVLAWFAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKI 459

Query: 804 INFSIIYGISPFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEYIEKT---------- 849
              ++ YG S   L       + +   E    +  + +    I ++              
Sbjct: 460 AELALGYGGSVGALKAMGALEMGLSEGELQPLVTAWRNSNQNIVKFWWDIDRAAMNAVKY 519

Query: 850 --------KNFVRQNG--YVETIFGRR-----------------IHYDEINSPKSSIR-N 881
                     F  ++G  ++    GRR                 I Y+ I   K   R +
Sbjct: 520 HMDSEICGIKFSYKSGMLFITLPSGRRLSYVKPKLGTNQFGGECITYEGIGGTKKWERLD 579

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
                 +   +Q ++ DI   AM ++            + + IHDELV E 
Sbjct: 580 TYGPKLVENIVQATSRDILCYAMRTLS--------HCFITMHIHDELVIEA 622


>gi|77118186|ref|YP_338108.1| DNA polymerase [Enterobacteria phage K1F]
 gi|72527930|gb|AAZ72982.1| DNA polymerase [Enterobacteria phage K1F]
 gi|84095014|emb|CAJ29370.2| gp5 protein [Enterobacteria phage K1F]
          Length = 723

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 145/390 (37%), Gaps = 37/390 (9%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQ 676
           +FN  S   L  +L  +   P    T TG+     + LE +   D      ++ + E+  
Sbjct: 338 EFNPGSGDHLAKVLMERGWEPV-DFTDTGKPVVDDETLEHVKLPDAEAQACVELVREYLV 396

Query: 677 LSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT-DLGQK 732
           + K     A+        +     R+H   +    +TGR     PN+  +P      G+ 
Sbjct: 397 VQKRIGQAAEGKNAWLKLVGPDG-RMHGSINPCGAVTGRATHSSPNMAQVPANGAPYGET 455

Query: 733 IRRAFIS--------PPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIH---R 779
            R AF +        P     +  D S +ELR L + A         +     DIH    
Sbjct: 456 CRGAFGAAWNKTDGKPDPWIQVGVDASGLELRCLGNRAAPFDGGAYAKTVVEGDIHWANA 515

Query: 780 MVAAEIFGVNIEKVSPQM---RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           + A     V  +K +      R +AKT  ++ +YG    ++   +   + E +  +K++ 
Sbjct: 516 VNAGLAPNVPRDKSNHDHDAFRNNAKTFIYAFLYGAGAAKIGLIVGGGKKEGSALMKKFI 575

Query: 837 HRFPGIHEYIEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPI 892
              P I +  E   N  + ++ +V+       +R     ++  +  IR+    +A+NA +
Sbjct: 576 EGTPAIKDLREAVSNTLISESKWVDGENIVKWKRRWLKGLDGRRIHIRS--PHSALNALL 633

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVH 946
           QG  A + +  ++   + LE+             +  +HDEL      +EI   +  I  
Sbjct: 634 QGDGAVVCKHWIVETERMLEEAGYVHGWEGDFAYMAWVHDELQIACRTQEIAERTVEIAQ 693

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              +      N +  L    K+   W+E +
Sbjct: 694 LAMRKVGEFYNFKCVLDTEGKIGPTWKECH 723


>gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
 gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
          Length = 661

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 120/655 (18%), Positives = 223/655 (34%), Gaps = 142/655 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  + T + D   SK  A   +  +  +   F V      + V+   D    + + 
Sbjct: 2   MKELSIDLETYS-DIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVY---DLASGDEIP 57

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---------------YGISMRGFED--- 488
            EIL+ L     +E+ +K   N  ++++ L                  G  ++ F D   
Sbjct: 58  AEILAAL----SDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPAS 113

Query: 489 ---IMLMSYVLDSGRSSHDIASIAQKWLSYTRK---------------EILKSRKSSIPI 530
               M+ S  +    S   + ++ +      ++               ++   R  ++P 
Sbjct: 114 WKCTMIWSAYMGLPLSLEGVGAVLKLQDQKMKEGKDLIKYFCSPCKPTKVNGGRTRNLPE 173

Query: 531 DKISD-SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
                    + +   +  V L +   L    + + + H Y         +  ++  +GI 
Sbjct: 174 HAPDKWETFKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYH--------IDQEINDSGIM 225

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649
           +D D+++   A   ++  +L   + +++    N +S  Q+   L            K   
Sbjct: 226 LDMDVVENAIAFDERSKSALITAMKNITNLD-NPNSVVQMKQWLSDNGVETESLGKK--- 281

Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
                +    I   D  I K +    QL+K       ++ N + K  +    F    +  
Sbjct: 282 -----EVAGLIKETDGDISKALKLRLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANR 336

Query: 710 TGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPP 741
           +GR A     LQN+P                            I   L Q IR AFI+ P
Sbjct: 337 SGRWAGRLIQLQNLPQNHMSDLTEARELVRTGDYDTLDMLYDDIPDTLSQLIRTAFIARP 396

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRR 799
             K I +DYS IE R+LAH+A  T   +VF    DI+   A+++FGV ++K  ++  +R+
Sbjct: 397 GYKFIVSDYSAIEARVLAHLAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQ 456

Query: 800 HAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT------ 849
             K    ++ YG S   L    A ++ +   E    +  +    P I  +          
Sbjct: 457 KGKIAELALGYGGSVGALKSMGALEMGLTEEELQPLVDSWRSSNPMITAFWWNVDNAIKT 516

Query: 850 ------------KNFVRQNG-------------YVETIFGRRIH------YDEINSPKSS 878
                        +F  ++G             YV+   G          Y+ I S K  
Sbjct: 517 AIKMHIPTEVNGIHFCYKSGMLLIKRPSGRVLSYVKPKIGENRFGGESVTYEGIGSTKKW 576

Query: 879 IR-NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            R        +   +Q  + DI   AM ++            ++  +HDEL+ E 
Sbjct: 577 ERIESYGPKFVENIVQAVSRDILCNAMKTLR--------HCFIVGHVHDELIIEC 623


>gi|260776519|ref|ZP_05885414.1| probable exodeoxyribonuclease IX [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607742|gb|EEX34007.1| probable exodeoxyribonuclease IX [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 184

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 2/184 (1%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +PE LL  L  ++ A    GI ++  +G EADD++AT           VTIISTDK   Q
Sbjct: 1   MPEPLLNGLDAIQQAWWELGIDSLLSEGDEADDLVATLAMKVASHKEKVTIISTDKGYCQ 60

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L+SPT  + D  +   +D   + K++G+ P ++     L G S   +PG+PG+G K A  
Sbjct: 61  LLSPTLQIRDYFQHRWLDAPFIDKEFGVKPSQLADYWGLAGVSSSQVPGVPGVGPKAAKE 120

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           +L ++ ++E    +   +   K R+ + E+ ++AR  +K+  L+TD+ +   L+ +    
Sbjct: 121 ILTQFEDIEQAYTSDELVA--KYRKKLDEHIDSARRCKKVSALKTDIELGFNLQDIRFTG 178

Query: 267 CNGP 270
            N P
Sbjct: 179 ANTP 182


>gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
 gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 513

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 132/368 (35%), Gaps = 41/368 (11%)

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           ++ + +  +   I    G + N +S  ++ D  F +      +  K             +
Sbjct: 176 DLPQRIQDVTVEIGSAFGRRINPASHVEVVDA-FRREGIELASTRK-----------HLL 223

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
              D+P +  +L  R LSK+ ST      +    R  R    Y     ++GR AS     
Sbjct: 224 REVDHPAVPLLLRHRDLSKLFSTNGWQWLDSWV-RDDRFRPVYVPGGVVSGRWASRGGGA 282

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
             IP        +R + I+ P    + AD  Q+E RILA ++    +      + D++  
Sbjct: 283 LQIPKP------LRSSVIADPGHTFVIADAGQLEPRILAAMSGDARMVAA-AGADDLYAP 335

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
           VAAE F  +        R  AK     ++YG +             EA   +     RFP
Sbjct: 336 VAAETFDGD--------RGKAKVAILGVLYGATA-----------GEARSLLTLLRTRFP 376

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
              EY+E+      +   V +  GR       +           R   N  +Q +AA+  
Sbjct: 377 VAVEYVERAARAGERGEVVHSWLGRACPPPSPDFWSHGDARSRGRFTRNFVVQATAAEWA 436

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVP-EEEITTASQIIVHSMEKACLPKINLR 959
              +  + + L D    ++++   HDE++      +  T      V    +    +  +R
Sbjct: 437 LCVLADLRRRLAD-DPDSELVFFQHDEVMVHTRDPDSATRHVLGAVEVATRLLFGETRVR 495

Query: 960 VPLKVNIK 967
            P+ V ++
Sbjct: 496 FPMDVAVR 503


>gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
          Length = 644

 Score =  158 bits (399), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 107/619 (17%), Positives = 215/619 (34%), Gaps = 125/619 (20%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMR--GFEDIML-MS 493
           D     T+  EI+  L     ++  +K   N  +++  ++R+ G+S++  G+    +  S
Sbjct: 48  DLASGQTMPDEIMECL----MDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQAS 103

Query: 494 YV--------------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD-SQV 538
            +              LD  + S     I    +     +    R  ++P D        
Sbjct: 104 MLSLPLSLEGVGEALNLDKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELF 163

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           + + I + +V  Q+   L    I ++   +Y         +  ++   GI +D++L+   
Sbjct: 164 KTYCIRDVDVEKQIRNKLAKFPIPDREQELYC--------MDQRINDRGIMVDRELISHA 215

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
                    +  +  Y++SG + N +S  QL + L  K      +  K       A   E
Sbjct: 216 VTCDLLYKEAASKRAYEISGLE-NPNSVSQLKEWLNEK-GIEVDSLAK-------AAVEE 266

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +   +  I + +     +SK      +++   +    +         +  TGR A    
Sbjct: 267 LVEKTEGEISEMMKLRLSMSKTSVKKYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLV 326

Query: 719 NLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADY 750
            + N+P                                L + IR AF++ P  + I +D+
Sbjct: 327 QIHNLPQNHMEDLELARSIVKEGRYDLVELLYDSTPDVLSELIRTAFVAKPGCRFIVSDF 386

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM--RRHAKTINFSI 808
           S IE R++ ++A    + + F  +  I+   A+++F + IE+++     R   K  + + 
Sbjct: 387 SAIEARVMGYLAGEGWVMEEFRGAGKIYEQTASKMFHIPIEEITKGSPYRARGKVASLAC 446

Query: 809 IYGISPFRLATQLR---IPRSEAADYIKRYFHRFPGIHEY---IEKTKNFVRQNGYVETI 862
            YG +   L +      +   E    ++ +    P I  Y   I+       +   + T+
Sbjct: 447 QYGGAEGALVSMGALNFVEEEELKGLVQSWRTANPHIVNYWYEIDGAVKAAVKERKMTTV 506

Query: 863 FGRRIHYD----EINSPKSSIRNI-NERAAIN---------------------------- 889
               ++Y     +I  P   + +    R  +N                            
Sbjct: 507 GRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVSYEGIGTNRKWTRIESYGAKF 566

Query: 890 --APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--EEITTASQIIV 945
               +Q +A D+   AM+     LE       ++  IHDE+V EVPE    +   + I+ 
Sbjct: 567 CENIVQATARDVLAEAMLC----LEKKGFD--IVCHIHDEVVLEVPEGTSSVEEVNGIM- 619

Query: 946 HSMEKACLPKINLRVPLKV 964
                A  P     +PLK 
Sbjct: 620 -----AVCPDWCEGLPLKA 633


>gi|281413897|ref|ZP_06245639.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 134

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/134 (41%), Positives = 85/134 (63%), Gaps = 4/134 (2%)

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + +Y+       RQ+GY  TI GRR +  +++S    +R++ ERAA+NAPIQGSAADI +
Sbjct: 3   VRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSAADIIK 62

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
           RAM+ V   LE+H LA+++LLQ+HDEL+ EVP  E+  A+ ++   M +A      L VP
Sbjct: 63  RAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRAA----ELSVP 118

Query: 962 LKVNIKVSNNWQEE 975
           L V++    +W + 
Sbjct: 119 LDVHVGRGRSWHDA 132


>gi|297559551|ref|YP_003678525.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843999|gb|ADH66019.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 554

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 85/499 (17%), Positives = 164/499 (32%), Gaps = 78/499 (15%)

Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS-----IAQKW-LSYTRKEILKSRKSSIP 529
           L R G+ +    D  L   +L    + H  AS      A+   L      +    +    
Sbjct: 56  LVRAGVRVSRCHDAALTEALLLGYHARHGEASSLGAAWARLHRLPVPDDPVRPLGEGGTA 115

Query: 530 IDKISDSQVQEHAI----ENSNVILQLWLLLRPKLI-----VEKLLHVYERLDKPMIDVV 580
             + +  +     +    +    ++++      +L          + +   ++       
Sbjct: 116 HAQPALFEADRSTLPPGTDRLAALVEVHADQLRRLAQLPDPAPGRMRLLAAVESAGGLAA 175

Query: 581 SQMEITGIQIDQDLLKQV----------SAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
           ++M   G+    D+  ++          S +    L  L   I +  G + N  SP Q+ 
Sbjct: 176 AEMSHDGLPWRPDVHDEILTGLLGQRPPSGQRPPVLADLAARIGEAVGREVNPDSPAQVL 235

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
                 +  P             +     +   D+P++  +L +++LS++ S    +  +
Sbjct: 236 RA-MAWIGHPV-----------DSTRSWVLERIDHPVVPLLLRYKELSRLHSANGWAWLD 283

Query: 691 HINKRTQ--------RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
              +R          R H  Y +   ++GR A+       IP        +R A  + P 
Sbjct: 284 AWVRRRPGPDGTTLGRFHPDYVVGGVVSGRWATRGGGALQIPR------SLRGAVRADPG 337

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             L+ AD  Q+E R+LA ++    L         ++  +A  + G          R  AK
Sbjct: 338 WVLVRADAGQLEPRVLAAVSGDDALAAAAAEED-LYARLAVHVGG---------DRDRAK 387

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
               S +YG               +AA  +      +P   EY++         G V + 
Sbjct: 388 IGMLSAMYGQ-----------TSGDAAPLLATMRRLYPRALEYVDSAARTGEGGGIVRSW 436

Query: 863 FGRRIHYDEINSP------KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
            GR     E              R    R   N  +Q +AA+     + S+ + L D   
Sbjct: 437 LGRTSPVPEGWDAAVSGPGGERRRRAQGRFTRNFVVQATAAEWALVLLASLRQRLPDMPE 496

Query: 917 ATKMLLQIHDELVFEVPEE 935
              ++  +HDE+V  VP +
Sbjct: 497 GAGIVFFVHDEVVLHVPAD 515


>gi|239502682|ref|ZP_04661992.1| hypothetical protein AbauAB_10247 [Acinetobacter baumannii AB900]
          Length = 345

 Score =  157 bits (398), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 125/343 (36%), Gaps = 64/343 (18%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN + LVD +S  Y A +A  L S     +   A+  F   + +L    R+    +   V
Sbjct: 2   ENLIILVDANSIGYAAQHAIKLYSGS---MQTQAVFSFIKTMREL----RQRYPHAGMVV 54

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIP------EMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           ++D  A  +R E  P YK+NR   P      +    Q P ++ A +A GI  +     EA
Sbjct: 55  LWDGRAE-WRFEREPSYKSNRKSDPRMQQEHDAYKAQCPFIKRALKALGIKQMTSAIHEA 113

Query: 118 DDIIATYTYI-AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-IDIEHVIKKWGIP 175
           DD+        A      + +I+ D+D +QLV P     D   E + I   +  +K G  
Sbjct: 114 DDLAGILVQRFASDPNNRILLITGDRDWLQLVKPNVSWRDPRDESRFIHWANFYEKTGFK 173

Query: 176 PE-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN------------------LEN 216
                +  +AL GDS D I G+ GIG  TA  +L EYG+                  L +
Sbjct: 174 SPVAFLQGKALQGDSSDCISGVGGIGEATAIKILAEYGSVNEFWKLCDAGLKPPSKALRS 233

Query: 217 ILIN---------------------ASRIKQKKRRENILEYAET-------ARL-SRKLV 247
           +                             +K R + +  + +          L + +L+
Sbjct: 234 LYAGNSPYTKEEWESQFIYVEDSSLTDEQNEKARNKALKAHMDAYVGQGRRLFLRNLELM 293

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            L    P+      +I  + N          L F  ++  V  
Sbjct: 294 QLLRPAPLQKEHLEIIQGEINPDDFTELCGELAFGSILKNVPN 336


>gi|218678024|ref|ZP_03525921.1| DNA polymerase I [Rhizobium etli CIAT 894]
          Length = 143

 Score =  157 bits (397), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 112/143 (78%)

Query: 145 MQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
           MQLV+    +YD++K+++I I  V++KWG+PPEKM+ LQA+TGDS+DN+PGIPGIG KTA
Sbjct: 1   MQLVTSNVHMYDSMKDKQIGIPDVVEKWGVPPEKMIDLQAMTGDSVDNVPGIPGIGPKTA 60

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           A LL+EYG+L+ +L  A+ IKQ KRRE IL   E ARLSR+LV LRTDVP+ + L+ L+L
Sbjct: 61  AQLLEEYGDLDTLLDRAAEIKQVKRRETILANIEMARLSRELVRLRTDVPLDLDLDALVL 120

Query: 265 EDCNGPRLISFLKALEFTKLINR 287
           E  NGP+LI FLK +EFT L  R
Sbjct: 121 EPQNGPKLIGFLKTMEFTTLTRR 143


>gi|332522757|ref|ZP_08399009.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
 gi|332314021|gb|EGJ27006.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
          Length = 653

 Score =  157 bits (397), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 116/636 (18%), Positives = 213/636 (33%), Gaps = 129/636 (20%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F V      ++V+    +  K  L ++IL  L     +   +K   N  ++++ L     
Sbjct: 37  FAVSVDNGPVTVYDLDLT--KEKLPQDILETLV----DNSVIKWAFNASFERICLSN--- 87

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            ++ +   +L+   L        +   A   L  +  E + +            + +  +
Sbjct: 88  WLKKYHPDLLLDGFLSPVSWRCSMIWSAYLGLPLSL-EGVGTVLKLKDQKMREGADLIRY 146

Query: 542 AIENSNVIL--------------QLWLLL--RPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
                                    W       +  VE  L + ER+    +      E 
Sbjct: 147 FCLPCKPTKVNGGRIRNFPHHASNKWSTFIDYNRRDVEVELAIKERVKNFPVPSFVWNEY 206

Query: 586 T--------GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
                    GI ID D +K       ++   ++  +  L+G + N +S  Q+   L    
Sbjct: 207 HQDQIINDHGIGIDVDFVKAALKIDGESKAKIQAELKALTGLE-NPNSVLQMISWLREHG 265

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
                               E +   D    + +   +Q +K   +   ++ N + K  +
Sbjct: 266 VA--------TDSLDKNAVKELLKTVDETTAQVLKLRQQAAKSSVSKYQAMMNCVCKDGR 317

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP---------------------------IKTDLG 730
               F    +  TGR A     LQN+P                            +  L 
Sbjct: 318 ARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARDLFRTGDLESTELLYDTQDTLS 377

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           Q IR AF+    KK I  D+S IE R+L+H+A      +VFE   DI+ M A+++FGV +
Sbjct: 378 QLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVFEQGKDIYCMSASQMFGVPV 437

Query: 791 EKV--SPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHE 844
           EK   + ++R+  K    +  YG S   L    A  + + + E    +  +    P I  
Sbjct: 438 EKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLSKEELQPLVNSWRLANPNIVL 497

Query: 845 YIEKTKNFVR----------QNG----------YVETIFGRRIHY--DEI---------- 872
           Y     N V+           +G          ++    GR++ Y    I          
Sbjct: 498 YWWDVDNAVKTAVKELIPTSTHGIQFEVKSGILFITLPSGRKLAYIKPRIGDNQFGGESV 557

Query: 873 ------NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
                  + +           +   +Q  + DI   +M    K L+D     +++  +HD
Sbjct: 558 TYEGSGTAKRWERLESYGPKFVENIVQAISRDILAFSM----KQLKD----FRIVGHVHD 609

Query: 927 ELVFEVPEEE-ITTASQIIVHSMEKA--CLPKINLR 959
           E++ E  + + +   + +    M KA   +P INLR
Sbjct: 610 EIIIECDQSQNLEQIATL----MGKAPYWMPDINLR 641


>gi|60219516|emb|CAI56770.1| hypothetical protein [Homo sapiens]
          Length = 2149

 Score =  157 bits (397), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 150/372 (40%), Gaps = 41/372 (11%)

Query: 407  IAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH--- 461
            + +A+     +D   F  + E    ++S      S   +   K+ + YL+     E    
Sbjct: 1730 VGLAVCW-GGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1788

Query: 462  -FLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
              + I   I+  K++L   GIS+ + +ED  +  ++LD       + SI   +L +    
Sbjct: 1789 CSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP- 1847

Query: 520  ILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            +L+  ++S  I  +  +   EH     A   S +I      L   L  E L  V+ +++ 
Sbjct: 1848 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFRKVEM 1907

Query: 575  PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            P    ++ +E+ GI       +     +   L ++E   Y L+G  F+ +S   + ++LF
Sbjct: 1908 PSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLF 1967

Query: 635  TKLKFPSGAKTKT----------------------GQWKTTAQDLEQINCGDNPIIKNIL 672
             +LK P   + K                       G+  +T++D+       +P+   IL
Sbjct: 1968 LELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQLSTSKDVLNKLKALHPLPGLIL 2027

Query: 673  EWRQLSKIKSTYADSLP--NHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
            EWR+++   +     L     +N     +R++   S + T TGR+   EPN+QN+P   +
Sbjct: 2028 EWRRITNAITKVVFPLQREKCLNPFLGMERIYPV-SQSHTATGRITFTEPNIQNVPRDFE 2086

Query: 729  LGQKIRRAFISP 740
            +          P
Sbjct: 2087 IKMPTLVGESPP 2098


>gi|189427219|ref|YP_001949769.1| gp5 [Salmonella phage phiSG-JL2]
 gi|189085872|gb|ACD75687.1| gp5 [Salmonella phage phiSG-JL2]
          Length = 704

 Score =  157 bits (397), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 131/378 (34%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           F  SS   +   L      P    T+ G      + LE +   D      I  I E+  +
Sbjct: 334 FKPSSRDHIQKKLQEAGWVP-EKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++    + +H   +    +TGR     PNL  +P +++  G++ 
Sbjct: 393 QKRIGQAAEGDKAWLRYVQDDGK-IHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    + ++  +I
Sbjct: 452 RSAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYANEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQNAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 565

Query: 846 IEKTKNFVRQN----GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +  + ++    G  + +  +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 REAIQQSLVKSSAWIGAEQKVQWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  +HDE+      E I            +     
Sbjct: 624 LWIIKTEEMLIEKGLKHGWDGDFAYMAWVHDEIQVACRTEHIAQIVIDTAQEAMRWVGEH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
              R  L    K+  NW 
Sbjct: 684 WAFRCRLDTEGKMGPNWA 701


>gi|194100330|ref|YP_002003760.1| gp5 [Enterobacteria phage EcoDS1]
 gi|193201325|gb|ACF15804.1| gp5 [Enterobacteria phage EcoDS1]
          Length = 723

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 145/390 (37%), Gaps = 37/390 (9%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQ 676
           +FN  S   L  +L  +   P    T TG+     + LE +   D      ++ + E+  
Sbjct: 338 EFNPGSGDHLAKVLMERGWEPV-DFTDTGKPVVDDETLEHVKLPDAEAQDCVELVREYLV 396

Query: 677 LSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT-DLGQK 732
           + K     A+        +     R+H   +    +TGR     PN+  +P      G+ 
Sbjct: 397 VQKRIGQAAEGKNAWLKLVGPDG-RMHGSINPCGAVTGRATHSSPNMAQVPANGAPYGET 455

Query: 733 IRRAFIS--------PPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIH---R 779
            R AF +        P     +  D S +ELR L + A      +  +     DIH    
Sbjct: 456 CRGAFGAAWNKKDGKPDPWIQVGVDASGLELRCLGNRAAPFDGGEYAKTVVEGDIHWANA 515

Query: 780 MVAAEIFGVNIEKVSPQM---RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           + A     V  +K + +    R +AKT  ++ +YG    ++   +   + E A  +K++ 
Sbjct: 516 VNAGLAPNVKRDKSNHEHEAFRNNAKTFIYAFLYGAGAAKIGLIVGGGKKEGAALMKKFI 575

Query: 837 HRFPGIHEYIEKTKNF-VRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPI 892
              P I +  E   N  +  + +V+       +R     ++  +  IR+    +A+NA +
Sbjct: 576 EGTPAIKDLREAVSNTLISDSKWVDGENIVKWKRRWLRGLDGRRIHIRS--PHSALNALL 633

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVH 946
           QG  A + +  ++   + LE+             +  +HDEL      +EI      I  
Sbjct: 634 QGDGAVVCKHWIVETERMLEEAGYIHGWEGDFAYMAWVHDELQIACRTQEIAEEVVKIAQ 693

Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              +      N +  L    K+   W+E +
Sbjct: 694 LAMRKVGEFYNFKCVLDTEGKIGPTWKECH 723


>gi|256824902|ref|YP_003148862.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
 gi|256688295|gb|ACV06097.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
          Length = 587

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 95/564 (16%), Positives = 190/564 (33%), Gaps = 103/564 (18%)

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
               +  +     L L R G+ +    D+ L   +L S       A++A    +     +
Sbjct: 61  SVRWVWADSASVHLPLLRAGVRVPRAVDLGLQRAILRSA------AAVAHTDYARAPDSV 114

Query: 521 LKS--RKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKL---LHVYER 571
                  +S+     +D++V    +     +    L      +  L   +    L +   
Sbjct: 115 WDEVRAAASLTPAPPADTEVALFDVAAPGPDLEACLAEHRAQQACLAEARDGGRLALLCH 174

Query: 572 LDKPMIDVVSQMEITGIQIDQD-LLKQVSAEISK---------NLLSLEENIYD-LSGEK 620
            +     +  ++   G+  D      Q++  + +          + +L   I + L    
Sbjct: 175 AESVGGLIAQELNHAGVPFDASVHHAQLTTALGEADRHGGRPARMAALVARIRETLDAPG 234

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
            N  S   L   L            +    + T+    ++   D+P+I+ +LE++ L+++
Sbjct: 235 LNPDSAPTLVAAL------------RRAGLEVTSTRKWELRGLDHPVIEPLLEYKALARL 282

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            +    S   H   R  R    +     +TGR AS             L Q+IR A  + 
Sbjct: 283 YTANGWSWMRHWV-RDGRFRPDWVAGGVVTGRWASRGGGALQ------LPQQIRSAVRAE 335

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           P  +L+ AD +Q+E R+LA +++   + +      D+++ +        +++     R H
Sbjct: 336 PGWRLVVADAAQLEPRVLAAMSQDGAMARAAAAG-DLYQGL--------VDEGVVDTRAH 386

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK      +YG               EA   + R    +P    +++       +   V 
Sbjct: 387 AKVAMLGAMYGA-----------TSGEAGALMARLRRAYPRAMGWVDAAAAAGERGERVS 435

Query: 861 TIFGRRIHYDEIN-------------SPKSSIRNI-----NERAAINAPIQGSAADITRR 902
           T  GR                     SP +  R         R   N  +QG+AA+    
Sbjct: 436 TWLGRTSPAPPAFWREAQAAAQHPDASPAAERRAHSAAREWGRFTRNFVVQGTAAEWALC 495

Query: 903 AMISVHKSLED--------------HKLAT---KMLLQIHDELVFEVPEEEITTASQIIV 945
            M  + + L+D                L     +++  +HDE++   PEE     ++ + 
Sbjct: 496 WMGFLRRGLDDLHGPGGMREGDGGPGGLTASRPELVYFLHDEVIVHAPEEFADEVAECVR 555

Query: 946 HSMEKAC---LPKINLRVPLKVNI 966
            +  +A     P   +  PL V +
Sbjct: 556 EAARRAGVLLFPGSPVDFPLSVAV 579


>gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
 gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
          Length = 651

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 118/621 (19%), Positives = 208/621 (33%), Gaps = 137/621 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL----VLHRYG--------ISMRGFEDI 489
           K  L  +IL  L     N+  +K   N  ++++     L ++         +S   +   
Sbjct: 53  KENLPDQILQALV----NDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCS 108

Query: 490 MLMS-YV--------------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           M+ S Y+              L   +       I    L     +I   RK + P     
Sbjct: 109 MVWSAYLGLPLSLEGVGTVLKLKEQKLKEGGDVIRYFCLPCKPTKINGGRKRNFPH-HAP 167

Query: 535 DSQVQ--EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           D       +   +  V L +   LR   + + L   Y +           +   GI ID 
Sbjct: 168 DKWAAFINYNKRDVEVELAIKNKLRNHPVPDFLWEEYHQ--------DQNINDRGIGIDV 219

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           D +K       ++   ++E + +L+G + N +S  Q+   L             T     
Sbjct: 220 DFVKAAITIDEESKSKIQEELKELTGLE-NPNSVLQMIGWLREHG--------VTTNSLD 270

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                E +   D    K +   +Q +K   +   ++ N +    +    F    +  TGR
Sbjct: 271 KKAVKELLKVVDAKTTKVLKLRQQAAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGR 330

Query: 713 LASLEPNLQNIP---------------------------IKTDLGQKIRRAFISPPTKKL 745
            A     LQN+P                            +  L Q IR AF+    KK 
Sbjct: 331 WAGRLVQLQNLPQNHLPDLKEARDLFKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKF 390

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKT 803
           I  D+S IE R+L+H+A       VFE   DI+ M A+++FGV +EK   +  +R+  K 
Sbjct: 391 IVCDFSAIEARVLSHLAGEKWRSMVFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKI 450

Query: 804 INFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT---------- 849
              +  YG +   L    A  + +   E    +  +    P I  +              
Sbjct: 451 AELACGYGGAVGALKAMGAIDMGLDEQELQPLVDSWRQANPNIVLFWWDVDKAVKTAIKY 510

Query: 850 KNFVRQNG----------YVETIFGRRIHY------------------DEINSPKSSIRN 881
           +     +G          ++    GR++ Y                      + +     
Sbjct: 511 QKQTETHGIQFKVRKGMLFITLPSGRKLAYVKPKMGENQFGGESVTYEGTGTAKRWERLE 570

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE-ITTA 940
                 +   IQ  + DI   +M    K L+D     +++  +HDE++ E  + + +   
Sbjct: 571 SYGPKFVENIIQAISRDILAYSM----KQLKD----FRIVGHVHDEIIIECDQSQNLEQI 622

Query: 941 SQIIVHSMEKA--CLPKINLR 959
           + +    M KA   +P INLR
Sbjct: 623 ATL----MGKAPYWMPDINLR 639


>gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
 gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
          Length = 646

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 91/504 (18%), Positives = 187/504 (37%), Gaps = 103/504 (20%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
              + + I + +V  ++   L+   I E  + +Y         +  ++   G+ +D++L+
Sbjct: 162 ELFKSYCIRDVDVEKEIRRKLQHFPIPESEMELY--------RLDQKINDRGVLVDRELV 213

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +Q  +        + +  Y+L+G + N +S  Q+   L       +G + ++   KT A 
Sbjct: 214 RQAVSCDLLYKDVVTKRAYELTGLE-NPNSVAQIKSWLGE-----NGVEMESLSKKTVAG 267

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            +E+ +     +++  L    ++K      +++   +    +         +  TGR A 
Sbjct: 268 LIEESDGEVQELLRLRLL---MAKTSVKKYEAMERSVCSDGRVHGLLQFYGANRTGRWAG 324

Query: 716 LEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLIS 747
               +QN+P                                L + IR AFI  P  + + 
Sbjct: 325 RLVQVQNLPQNHILDLEMARNLVKQGRFEDVELLYDSTPNVLSELIRTAFIPKPGYRFVV 384

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM--RRHAKTIN 805
           AD+S IE R+LA ++      +VF +   I+   A+ +F V IE+V+     R+  K   
Sbjct: 385 ADFSAIEARVLAWLSGERWRLEVFASHGKIYEASASAMFHVPIEEVTKGSPFRQKGKISE 444

Query: 806 FSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------R 854
            ++ YG +   L    A  + +   E A  +  +    P I ++               +
Sbjct: 445 LALGYGGAVGALTSMGALDMGLVEEELAPLVSAWRSANPHITQFWWDVDAAAVKAVTEKK 504

Query: 855 QNG-------------YVETIFGRRI-HYDEINSPKSSIRNI-----------NERAAIN 889
           +               +VE   GR++ +     +     RN             +R    
Sbjct: 505 KTRAGRIVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLTYEGIAENKKWDRIETY 564

Query: 890 AP------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--EEITTAS 941
            P      +QG+A D+   AM+ V       ++   +++  HDE++ EVPE    +    
Sbjct: 565 GPKLVENIVQGTARDLLAEAMLRV------EEMGYPIVMHCHDEIIAEVPEGTGSVEEMC 618

Query: 942 QIIVHSMEKACLPKINLRVPLKVN 965
            ++      A  P+    +PL+ +
Sbjct: 619 AVM------AVQPEWADGLPLRAD 636


>gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase
 gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2]
 gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2]
          Length = 648

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 108/682 (15%), Positives = 222/682 (32%), Gaps = 147/682 (21%)

Query: 387 IGSASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
           + + S  I T  ++D   +       +  +  D         F D  V     + G +TL
Sbjct: 1   MKTLSIDIETFSSVDLLKAGV----YAYTEAPDFEILLFAYAFDDDPVKIIDLAQG-DTL 55

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLD-SGRS 501
             E+L  L     +   +K  +N  +++  + ++    +    +    + +  L   G  
Sbjct: 56  PHEVLVALT----SSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPG-- 109

Query: 502 SHDIASIAQ----------------KWLSYTRKEILKSRKSSIPIDKISDSQVQE---HA 542
             ++  +A+                ++ S   K    + +    + +    + ++   + 
Sbjct: 110 --NLDGVAKALKLSAQKDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYC 167

Query: 543 IENSNVILQLWL---LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           I++  V   +        P     KL  + + +              G++ID DL+K   
Sbjct: 168 IQDVEVERAIKNRISKFEPLESEHKLWALDQEI-----------NDRGVRIDVDLVKHAI 216

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           A   +    L      L+G   N +S  QL   L  K      +  K         +   
Sbjct: 217 ACDEQYQAGLIAEAKKLTGLP-NPNSTAQLKKWLEEK-GLTISSLAK------DKIEELI 268

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
            N  D  + + +   ++++K       ++   +    +         ++ TGR A     
Sbjct: 269 ENTNDETVHRVLRLRQEMAKTSVKKYLAMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQ 328

Query: 720 LQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADYS 751
           +QN+P                            +   L Q +R AFI     +   +D+S
Sbjct: 329 VQNLPQNKIEDLDTARNLLKGGHYEAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFS 388

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--PQMRRHAKTINFSII 809
            IE R++A +A      +VF     I+   AA++F V +E ++    +R+  K    ++ 
Sbjct: 389 AIEARVIAWLAGEEWRLEVFNTHGKIYEASAAQMFKVPVESITKGSPLRQKGKVAELALG 448

Query: 810 YGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-----------R 854
           Y      L    A  + +   E  + +K +      I ++    +               
Sbjct: 449 YQGGKGALIQMGALNMGLAEGELPELVKAWRTANKKIVKFWYDVEAAAIKAVKERKPVKL 508

Query: 855 QNG----------YVETIFGRRIHY-------------------DEINSPKSSIRNINER 885
           Q+G          +V+   GRR+ Y                    ++ S K    N    
Sbjct: 509 QHGLTFLYESGILFVQLPSGRRLAYAKPKLELDERFGKEALTYEGKLESGKWGRLNTYGG 568

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP--EEEITTASQI 943
             +   +Q +A D     ++ +  +        K ++ +HDE V +VP  + E+     I
Sbjct: 569 KLVENIVQATARDCLAITLMRLDNA------GYKTVMHVHDEAVLDVPRGKNELDKVEAI 622

Query: 944 IVHSMEKACLPKINLRVPLKVN 965
               M +       L  PL  +
Sbjct: 623 ----MGEPISWAKGL--PLTAD 638


>gi|313760827|gb|ADR79390.1| DNA polymerase [T7-like bacteriophage Eptesicus
           fuscus/P1/IT/USA/2009]
          Length = 713

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 145/383 (37%), Gaps = 37/383 (9%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE----WR 675
           +FN +S   L  +L  +   P+   T  G  K   + LE +   D P+ ++ LE    + 
Sbjct: 335 EFNPNSNDHLIKVLTDRGWEPT-EFTDKGNPKCDDETLEYVKLKD-PVAQHCLELVRKYL 392

Query: 676 QLSKIKSTYADSLPNHIN--KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-GQK 732
            + K+ +  A+     +   K   RVH   +    +TGR     PN+  +P    L G+ 
Sbjct: 393 VIQKLIAQAAEGKQAWLKNVKSDGRVHGSINPCGAVTGRATHSSPNMAQVPANGKLHGET 452

Query: 733 IRRAFIS--------PPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIH---R 779
            R AF +        P     +  D S +ELR L H A      +  EN  + DIH    
Sbjct: 453 CRGAFGAHHNKKDGKPDPWIQVGVDASGLELRCLGHFAAPYDGGEYAENVLNGDIHWTNA 512

Query: 780 MVAAEIFGVNIEKVSP---QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           + A     V  +K        R +AKT  ++ +YG    ++ + +     E  +  K++ 
Sbjct: 513 VNAGLAPNVPRDKEDHYHDACRNNAKTFIYAFLYGAGAAKIGSIVGGHAKEGKELTKKFM 572

Query: 837 HRFPGIHEYIEKTK-NFVRQNGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPI 892
              P I    E      V    +V+       +R     ++  K  +R+    +A+N  +
Sbjct: 573 EGTPAIKSLREGIASALVSSEKWVDGEMQVKWKRRWLKGLDGRKVHVRS--PHSALNTLL 630

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVH 946
           Q + A I ++ ++ V K++               +  +HDEL      +EI      I  
Sbjct: 631 QSAGALICKKWIVEVEKAMIAAGYKHGWDGDFAYMAWVHDELQIACRTQEIAEHCVQIAQ 690

Query: 947 SMEKACLPKINLRVPLKVNIKVS 969
            + +A       R  L    K+ 
Sbjct: 691 DVMRAVGEHFKFRCQLDTEGKIG 713


>gi|146087835|ref|XP_001465919.1| DNA polymerase theta (polymerase domain only) [Leishmania infantum
            JPCM5]
 gi|134070020|emb|CAM68350.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
            infantum JPCM5]
          Length = 1169

 Score =  156 bits (395), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/274 (26%), Positives = 128/274 (46%), Gaps = 39/274 (14%)

Query: 731  QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN- 789
              +R  + +PP   L S D++Q+ELR+LAH++    L +    ++D+  +V A +  +  
Sbjct: 896  WTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASVLRLPS 955

Query: 790  IEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEA-------------------- 828
            I+ V PQ R+  K I + ++YG+ P  +  ++ +I    A                    
Sbjct: 956  IDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEFATSEQQQHRGEAASSAPAPMA 1015

Query: 829  -ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
              D ++R+   +P I  Y+ +T+    ++  VET+ GR+    E ++ +   R I +   
Sbjct: 1016 ARDLLRRFHRVYPRIENYLRETRQEALRSFAVETLSGRKSLIAEKDANRRRQRAIAQ--- 1072

Query: 888  INAPIQGSAADITRRAMISVHKS-------LEDHKLATKMLLQIHDELVFEVPEEEITTA 940
                +QG AAD+   AM +VH+        L    LA  +++ IHDELV+ VP   I   
Sbjct: 1073 ---AVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA--LVMSIHDELVYAVPRVAIEEV 1127

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + +   +E      + L VPL V+ +V +   E
Sbjct: 1128 VRGVQRILEDQAR-VLRLAVPLPVSARVGHCLGE 1160


>gi|325672986|ref|ZP_08152680.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
 gi|325556239|gb|EGD25907.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
          Length = 521

 Score =  156 bits (395), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/534 (15%), Positives = 178/534 (33%), Gaps = 72/534 (13%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDI 505
           T ++ + +++    EH   +  +       L   G+ ++   D+ L   +LD        
Sbjct: 40  TADVAATVREIEAAEHPRWVFEDSARACPPLLAEGVRVQRSHDLRLTGALLDMRAGR--- 96

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
                            +    +P+D          A    +V+++        +  +  
Sbjct: 97  ----------------PAPAPEVPVDDRP-GLFDAVASTAPDVVIERHRRQLAVIADDPR 139

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLL----------KQVSAEISKNLLSLEENIYD 615
           L +    +       ++M   G+    D            +     +   L  + + +  
Sbjct: 140 LRLLVAAESAGGLAAAEMSHDGLPFSTDAHLALLADALGPRTRDDMLPVRLHQVADEVSA 199

Query: 616 LSGEKFNLSS-PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
             G + N +S P+ +       ++  S  K               +   D+P ++ +L +
Sbjct: 200 AFGRQVNPASQPEVVAAFAREGIELASTRKY-------------LLREIDHPAVEPLLRY 246

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           R L+K+ +    +  +    R  R    Y     ++GR AS       IP        +R
Sbjct: 247 RDLAKLHAANGWTWLDAWV-RGNRFRPVYVPGGVVSGRWASRGGGALQIPK------ALR 299

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
            + ++ P    + AD  Q+E RILA ++    +      + D++ +VAAE+FG +     
Sbjct: 300 TSVVADPGHTFVIADAGQLEPRILAAMSGDPRMTAA-AGTDDLYALVAAEVFGGD----- 353

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK     ++YG +             EA   +     RFP   + +E       
Sbjct: 354 ---RAKAKIAILGVLYGATA-----------GEARALLTLLRKRFPVAVQLVEDAARAGE 399

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +   V +  GR       +   +   +   R   N  +Q +AA+     +  + + L   
Sbjct: 400 RGEVVHSWLGRACPPPSDSWWSNGDTHARGRFTRNFVVQATAAEWALCLLADLRRRLSAA 459

Query: 915 KLATKMLLQIHDELVFEV-PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
               +++   HDE++      +           S  +       +R P++V ++
Sbjct: 460 PGDGELVFFQHDEVMVHTRRPDAAAAHVLASAASATRLLFGDTAVRFPMEVEVR 513


>gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
          Length = 661

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 145/458 (31%), Gaps = 84/458 (18%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
            +   G+++D DL  ++          L++    L+G   N +S  QL    F       
Sbjct: 204 HINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLTGLN-NPNSLPQLKMWFFMTYGLDV 262

Query: 642 GAKTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
            + TK       AQ  E     D  P ++ +   ++L K       ++ + +        
Sbjct: 263 PSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIRKELGKTSVKKYQAMRHAVCPDGYLRG 322

Query: 701 TFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQK 732
                 +  TGR A     + N+P                            I     Q 
Sbjct: 323 ILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLARDLVKQEDFDTLELLFEGIPFVFSQL 382

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AFI     + + +D+S IE R++A +A       VF     I+   AA++F V IE 
Sbjct: 383 IRTAFIPSEGYRFVVSDFSAIEARVIAWLADEKWRLNVFRTHGKIYEASAAQMFHVPIEN 442

Query: 793 V--SPQMRRHAKTINFSIIYGIS---PFRLATQLRIPRSEAADYIKRYFHRFPGIHE--- 844
           +    ++R+  K    ++ YG        +     IP  E    I  +    P I +   
Sbjct: 443 IKKGSRLRQQGKVAELALGYGGGFGAMKAMDKAGTIPDDEIPMIIANWRKASPNICKLWR 502

Query: 845 -------------------------YIEKT--------KNFVRQNGYVETIFGRRIHYDE 871
                                    YI +         +     +  +E     +     
Sbjct: 503 NAEAAARAAIEERRTIKLKHGLSFSYINRILFIGLPSGRKLAYYDTRIEDDEKGKSVITY 562

Query: 872 IN----SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
                 + K           +   +Q +A D     M  V           ++++ +HDE
Sbjct: 563 AGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERV------SGAGYQIVMHVHDE 616

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           ++ +VPE +I    + I   M +       L  PL+ +
Sbjct: 617 IIVDVPETDIDAL-EKITAIMAQPVPWAQEL--PLRGD 651


>gi|322499407|emb|CBZ34480.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1171

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/274 (26%), Positives = 128/274 (46%), Gaps = 39/274 (14%)

Query: 731  QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN- 789
              +R  + +PP   L S D++Q+ELR+LAH++    L +    ++D+  +V A +  +  
Sbjct: 898  WTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASVLRLPS 957

Query: 790  IEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEA-------------------- 828
            I+ V PQ R+  K I + ++YG+ P  +  ++ +I    A                    
Sbjct: 958  IDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEFATSEQQQHRGEAASSAPAPMA 1017

Query: 829  -ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
              D ++R+   +P I  Y+ +T+    ++  VET+ GR+    E ++ +   R I +   
Sbjct: 1018 ARDLLRRFHRVYPRIENYLRETRQEALRSFAVETLSGRKSLIAEKDANRRRQRAIAQ--- 1074

Query: 888  INAPIQGSAADITRRAMISVHKS-------LEDHKLATKMLLQIHDELVFEVPEEEITTA 940
                +QG AAD+   AM +VH+        L    LA  +++ IHDELV+ VP   I   
Sbjct: 1075 ---AVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA--LVMSIHDELVYAVPRVAIEEV 1129

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + +   +E      + L VPL V+ +V +   E
Sbjct: 1130 VRGVQRILEDQAR-VLRLAVPLPVSARVGHCLGE 1162


>gi|255023377|ref|ZP_05295363.1| hypothetical protein LmonocyFSL_07860 [Listeria monocytogenes FSL
           J1-208]
          Length = 165

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 8/162 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++ S      
Sbjct: 3   ENRENLLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGVQGFMRHMFAAIRQSN----P 58

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
           +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  L +     FG   + + GFEAD
Sbjct: 59  THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           D I T T  A     A T++S DKDL+QL++PT  ++   K 
Sbjct: 119 DCIGTITVQASN-TIATTVLSGDKDLLQLIAPTNDVWIMQKG 159


>gi|312141752|ref|YP_004009088.1| DNA polymerase i pola2 [Rhodococcus equi 103S]
 gi|311891091|emb|CBH50410.1| putative DNA polymerase I PolA2 [Rhodococcus equi 103S]
          Length = 521

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/534 (15%), Positives = 181/534 (33%), Gaps = 72/534 (13%)

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDI 505
           T ++ + +++    EH   +  +       L   G+ ++   D+ L   +LD        
Sbjct: 40  TADVAATVREIEAAEHPRWVFEDSARVCPPLLAEGVRVQRSHDLRLTGALLDMRAGR--- 96

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            + A +     R  +  +  S+ P                 +V+++        +  +  
Sbjct: 97  PAPAPEMPVDDRPGLFDAVASTAP-----------------DVVIERHRRQLAAIADDPR 139

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLL----------KQVSAEISKNLLSLEENIYD 615
           L +    +       ++M   G+    D            +     +   L  + + +  
Sbjct: 140 LRLLVAAESAGGLAAAEMSHDGLPFSTDAHLALLADALGPRTRDDMLPVRLHQVTDEVSA 199

Query: 616 LSGEKFNLSS-PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
             G + N +S P+ +       ++  S  K               +   D+P ++ +L +
Sbjct: 200 AFGRQVNPASQPEVVAAFAREGIELASTRKY-------------LLREIDHPAVEPLLRY 246

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           R L+K+ +    +  +    R  R    Y     ++GR AS       IP        +R
Sbjct: 247 RDLAKLHAANGWTWLDAWV-RGNRFRPVYVPGGVVSGRWASRGGGALQIPK------ALR 299

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
            + I+ P    + AD  Q+E RILA ++    +      + D++ +VAAE+FG +     
Sbjct: 300 TSVIADPGHTFVIADAGQLEPRILAAMSGDPRMTAA-AGTDDLYALVAAEVFGGD----- 353

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK     ++YG +             EA   +     RFP   + +E       
Sbjct: 354 ---RAKAKIAILGVLYGATA-----------GEARALLTLLRKRFPVAVQLVEDAARAGE 399

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +   V +  GR       +   +   +   R   N  +Q +AA+     +  + + L   
Sbjct: 400 RGEVVHSWLGRACPPPSDSWWSNGDTHARGRFTRNFVVQATAAEWALCLLADLRRRLSAA 459

Query: 915 KLATKMLLQIHDELVFEV-PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
               +++   HDE++      +           S  +       +R P++V ++
Sbjct: 460 PGDGELVFFQHDEVMVHTRRPDAAAAHVLASAASATRLLFGDTAVRFPMEVEVR 513


>gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
 gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
          Length = 651

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 104/523 (19%), Positives = 181/523 (34%), Gaps = 106/523 (20%)

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQ--EHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
           L Y   +I   RK + P     D       +   +  V L +   LR   + + L   Y 
Sbjct: 147 LPYKPTKINGGRKRNFPH-HAPDKWAAFINYNKRDVEVELAIKNKLRNHPVPDFLWEEYH 205

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
           +           +  +GI ID D +K       ++   ++E + +L+G + N +S  Q+ 
Sbjct: 206 Q--------DQNINDSGIGIDVDFVKAAITIDEESKSKIQEELKELTGLE-NPNSVLQMI 256

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
             L             T          E +   D    K +   +Q +K   +   ++ N
Sbjct: 257 GWLREHG--------VTTNSLDKKAVKELLKVVDAKTTKVLKLRQQAAKSSVSKYQAMVN 308

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-------------------------- 724
            +    +    F    +  TGR A     LQN+P                          
Sbjct: 309 CVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARDLFKTGDLEATDLLY 368

Query: 725 -IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
             +  L Q IR AF+    KK I  D+S IE R+L+H+A       VFE   DI+ M A+
Sbjct: 369 GTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMVFEQGKDIYCMSAS 428

Query: 784 EIFGVNIEKV--SPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFH 837
           ++FGV +EK   +  +R+  K    +  YG +   L    A  + +   E    +  +  
Sbjct: 429 QMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMGLDEQELQPLVDSWRQ 488

Query: 838 RFPGIHEYIEKT----------KNFVRQNG----------YVETIFGRRIHY-------- 869
             P I  +              +     +G          ++    GR++ Y        
Sbjct: 489 ANPNIVLFWWDVDKAVKTAIKYQKQTETHGIQFKVRKGMLFITLPSGRKLAYVKPKMGEN 548

Query: 870 ----------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
                         + +           +   IQ  + DI   +M    K L+D     +
Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSM----KQLKD----FR 600

Query: 920 MLLQIHDELVFEVPEEE-ITTASQIIVHSMEKA--CLPKINLR 959
           ++  +HDE++ E  + + +   + +    M KA   +P INLR
Sbjct: 601 IVGHVHDEIIIECDQSQNLEQIATL----MGKAPYWMPDINLR 639


>gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes]
 gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes]
 gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 651

 Score =  155 bits (393), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 164/466 (35%), Gaps = 97/466 (20%)

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEIT--------GIQIDQDLLKQVSAEISKNLLSLE 610
           +  VE  L + ER+    +      E          GI ID D +K       ++   ++
Sbjct: 178 RRDVEVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQ 237

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
             +  L+G +   +S  Q+   L            K           E +   D    + 
Sbjct: 238 AELKTLTGLE-KPNSVLQMISWLREHGVATDSLDKK--------AVKELLKTVDETTAQV 288

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP------ 724
           +   +Q +K   +   ++ N + K  +    F    +  TGR A     LQN+P      
Sbjct: 289 LKLRQQAAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPD 348

Query: 725 ---------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
                                 +  L Q IR AF+    KK I  D+S IE R+L+H+A 
Sbjct: 349 LKEARELFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAG 408

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSIIYGISPFRL---- 817
                +VFE   DI+ M A+++FGV +EK   + ++R+  K    +  YG S   L    
Sbjct: 409 ERWRSKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG 468

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR------------------QNG-- 857
           A  + +   E    +  +    P I  Y     N V+                  ++G  
Sbjct: 469 ALDMGLSEEELQPLVNSWRQANPNIVLYWWDVDNAVKTAVKELLPTSTQNIQFEVKSGIL 528

Query: 858 YVETIFGRRIHY--DEI----------------NSPKSSIRNINERAAINAPIQGSAADI 899
           ++    GR++ Y    I                 + +           +   +Q  + DI
Sbjct: 529 FITLPSGRKLAYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDI 588

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP-EEEITTASQII 944
              +M  ++          K++  +HDE++ E P E+++   + ++
Sbjct: 589 LAFSMKQLND--------FKIVGHVHDEVIIECPIEQKLDEVASLM 626


>gi|71755431|ref|XP_828630.1| DNA polymerase theta [Trypanosoma brucei TREU927]
 gi|70834016|gb|EAN79518.1| DNA polymerase theta, putative [Trypanosoma brucei]
          Length = 896

 Score =  155 bits (393), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/311 (25%), Positives = 137/311 (44%), Gaps = 47/311 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIK------------------TDLGQKIRRAFISP 740
           VH  +++  T TGRL    PNLQ +P                    T+    +R  +   
Sbjct: 585 VHPHWAVHHTSTGRLYCSRPNLQTVPKTAQKCTYVSPLTSDYGLLFTNPEWTMRHLYGPA 644

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRR 799
           P   L+S D++Q+ELR+LAH++    L +   +  D+   +   I G+ + E+V P +R 
Sbjct: 645 PGCVLLSFDFNQMELRVLAHLSGDELLIKHLSSEYDVLSAMTRHITGLSDDEQVPPHLRE 704

Query: 800 HAKTINFSIIYGISPFRLATQLRI-----------PRSEAAD-YIKRYFHRFPGIHEYIE 847
             K + + + YG+    +  +++I            R   AD  ++ +  R+P   +++ 
Sbjct: 705 TVKVVVYGLFYGMGLATMKERVKILMDSAHSVPSSQRKFTADTLLRAFHQRYPAAGKFLT 764

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI-QGSAADITRRAMIS 906
           + +              R +    IN   S       R    A I QGS++ + + AM+ 
Sbjct: 765 RARIRAF-------HEARCVTLTGINDLSSEKDGNRRRQHSIARILQGSSSTLFQSAMVK 817

Query: 907 VHKSLED--HKLAT---KMLLQIHDELVFEVPEEEITTASQIIVHSM-EKACLPKINLRV 960
           VH+   D    L      ++L IHDEL++ V E  +   ++ I   M E+A +   +LRV
Sbjct: 818 VHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVARKIKGIMVEQAQV--FSLRV 875

Query: 961 PLKVNIKVSNN 971
           PL+V++KV   
Sbjct: 876 PLRVSVKVGKT 886


>gi|167464943|ref|ZP_02330032.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384416|ref|ZP_08058102.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150774|gb|EFX44234.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 388

 Score =  155 bits (393), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 124/332 (37%), Gaps = 81/332 (24%)

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVFE 772
             NLQN+P K   G ++R  FI       I AD  QI+ RI+AHI         + Q+F 
Sbjct: 24  GTNLQNLPAKGA-GVRVRNCFIPRKGFTFIGADLGQIQPRIMAHIMYVKYGDNSMRQIFV 82

Query: 773 NSLDIHRMVAAEIFGVNI---------EKVSPQ-------------MRRHAKTINFSIIY 810
           + +D++  +A   FG+           + VS Q              R+  KT   ++ Y
Sbjct: 83  DGVDLYTKMAMMTFGLPEQVCLDKAWYDPVSGQGGFGGEPPATAYYPRKMMKTGQLAVSY 142

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
             SP   A ++ +    A  + + +   FP     ++  +  ++++GYVET+FGR+  + 
Sbjct: 143 DQSPRAFAKKMNVTEDVAHMFFENFDETFPSFKPMVKDYREMMKRDGYVETLFGRKRRFP 202

Query: 871 EIN-----------------------------------------------SPKSSIRNIN 883
           + N                                               S K  +    
Sbjct: 203 DFNEVAAFVKRNEQRLYRLYSERKRLQNITNPRDADRKRLTAVQDEIDILSAKRGLVGYW 262

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI-TTASQ 942
            RAA NA IQG+ ADI +   I       +     +M   IHDE+   +P ++       
Sbjct: 263 IRAAFNAVIQGTGADILKLIGIRNAAVCRERG--WEMNASIHDEIKNSIPNDQFTAETID 320

Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +I   M K     + L VPL  +  +   W +
Sbjct: 321 LINEIMMK----TVELSVPLVTDTVIEPCWMQ 348


>gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
 gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
          Length = 662

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 105/665 (15%), Positives = 203/665 (30%), Gaps = 129/665 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T +            +            +    +D       D      + 
Sbjct: 1   MKTISIDIETFS----DVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRGFED----IMLMSYVLDS 498
           ++IL  L     ++  LK   N  ++++ L RY    G  +  F D     +  +  L+ 
Sbjct: 57  EDILDALT----DDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNP 112

Query: 499 GRSSHDIASIAQKWLSYTRKEIL----------KSRKSSIPIDKISDSQVQEHAIENSNV 548
                 +   A   L  + K +              K+ I    +  +  + +     N+
Sbjct: 113 EGWRCSMVWAATMGLPLSLKGVGAVLQLADQKMDEGKALIKYFSVPCAPTKANGGRTRNL 172

Query: 549 ILQL---WLLLRP--KLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLL 595
                  W   +   +  VE  + +  +L    +         +  ++   G++ID DL+
Sbjct: 173 PSDDPGKWATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLV 232

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           ++     +++   L E +  ++  + N +S +Q+   L            K         
Sbjct: 233 EKAIDMDTRSRSELTEKMQAITNLE-NPNSVQQMKQWLSDNGMEVDSLGKK--------A 283

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
               +      + + +   +QL+K       ++   +   ++    F    +  TGR A 
Sbjct: 284 VTALLKTAPPELTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAG 343

Query: 716 LEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLIS 747
               LQN+P                            +   L Q IR AFI     +   
Sbjct: 344 RLIQLQNLPQNHLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYV 403

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTIN 805
           AD+S IE R++A  A        F N  DI+   A  +F   + K  V+ ++R   K   
Sbjct: 404 ADFSAIEARVIAWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAE 463

Query: 806 FSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN--FVRQNGYV 859
            +  YG S   L    A ++ +   E  D +  +      I ++              + 
Sbjct: 464 LACGYGGSTGALKAMGALEMGLSEDELPDIVSSWRDANQQIVKFWWDVDKAVMAAVKNHK 523

Query: 860 ETIFGR-----------------------------------RIHYDEINSPKSSIR-NIN 883
            T  GR                                    I Y+ +   K   R    
Sbjct: 524 TTRLGRLAFFWQAGMLFITLPSGRNLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESY 583

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV-PEEEITTASQ 942
               +   +Q ++ DI   +M  +            + + IHDELV E  P   + T  +
Sbjct: 584 GPKFVENIVQATSRDILCNSMKMLR--------HCDVCMHIHDELVIEADPRVSLDTLCE 635

Query: 943 IIVHS 947
            +   
Sbjct: 636 QMGRV 640


>gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 650

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 123/679 (18%), Positives = 229/679 (33%), Gaps = 139/679 (20%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + S S  + T +            +    + +D +  +    +D       D      + 
Sbjct: 1   MESLSIDLETRS----SVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
           +EIL  L     +E  +K   N  ++++ L RY        D+ +    LD    +H ++
Sbjct: 57  QEILDALT----DESVIKWAFNANFERVCLSRY------LSDLGIA---LDPFHDNHPLS 103

Query: 507 SIAQKWLS------------YTRKEI-LKSRKSSIPIDKISDSQVQEHAIENS-----NV 548
           +   ++LS            Y    + L      + +++   ++ +      S       
Sbjct: 104 TECARFLSPHSWRCTMVWSAYMGLPLSLAGVGRVLGLEEQKMNEGKALIRYFSTPPFHEP 163

Query: 549 ILQLWLLLRP--------KLIVEKLLHVYERLDKPMIDVVSQMEIT--GIQIDQDLLKQV 598
               W L +         ++ ++K L  Y        + V   EI   GI++D  L++  
Sbjct: 164 TGAKWDLFKSYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENA 223

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
                +    L + +  L+  + N +S  Q+   L  +         K+           
Sbjct: 224 VQIDVRTKEKLTDRLKTLTSLE-NPNSVTQMKAWLKEQGVETESLDKKS--------VTA 274

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +    +P+ + +   +QL+K       ++ N +    +    F    +  TGR +    
Sbjct: 275 LLANVPDPLKEVLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHI 334

Query: 719 NLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADY 750
            LQN+P                            +   L Q IR AFIS   +K I AD+
Sbjct: 335 QLQNLPQNHLADLEYARSLVRQGSFAALELLYESVPDVLSQLIRTAFISKEGRKFIVADF 394

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSI 808
           S IE R+L+ +AK      VF N  DI+   A  +F  N+ K   +  +R++ K    S 
Sbjct: 395 SAIEARVLSWLAKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSS 454

Query: 809 IYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYI----EKTKNFVRQN---- 856
            YG S   L    A +  +   E    +  +    P I ++       TK+ +++     
Sbjct: 455 GYGGSVGALKAFGALESGMKEEELNPLVDAWRAANPNIVDFWWAVDRATKDCIKERSTKV 514

Query: 857 ------------GYVETIFGRRIHY--DEIN----------------SPKSSIRNINERA 886
                        ++E   GRR+ Y    I                 S K +        
Sbjct: 515 THGIRFIYQGSMMFIELPCGRRLAYVKPRIGENQFGGESVTYMGLNLSKKWARIESYGPK 574

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
            +    Q  + DI   AM ++            ++  +HDEL+ E   +E  + S  I  
Sbjct: 575 LVENVTQAISRDILCYAMQTLRTM--------DIVAHVHDELIIEC--DERVSLSA-ICE 623

Query: 947 SMEKACLPKINLRVPLKVN 965
            M +       L  PL+ +
Sbjct: 624 QMARTPPWADGL--PLRAD 640


>gi|157870107|ref|XP_001683604.1| DNA polymerase theta (polymerase domain only) [Leishmania major
            strain Friedlin]
 gi|68126670|emb|CAJ04554.1| putative DNA polymerase theta [Leishmania major strain Friedlin]
          Length = 1170

 Score =  155 bits (392), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/274 (25%), Positives = 130/274 (47%), Gaps = 39/274 (14%)

Query: 731  QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN- 789
              +R  + +PP   L S D++Q+ELR+LAH++    L +    ++D+  +V A +  +  
Sbjct: 897  WTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASVLRLPS 956

Query: 790  IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE---------------------- 827
            I++V PQ R+  K + + ++YG+    +  +++    E                      
Sbjct: 957  IDRVRPQQRQAVKVVVYGLLYGMGLESMDVRIKKINEEFAASEQQQHRGEASSSAPAPMP 1016

Query: 828  AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            A D ++R+   +P I  Y+ +T+    ++  VET+ GR+    E ++ +   R I +   
Sbjct: 1017 ARDLLRRFHRVYPRIESYLRETRQEALRSFAVETLSGRKSLIAEKDANRRKQRAIAQ--- 1073

Query: 888  INAPIQGSAADITRRAMISVHKS-------LEDHKLATKMLLQIHDELVFEVPEEEITTA 940
                +QG AAD+   AM +VH+        L    LA  +++ IHDELV+ VP   I   
Sbjct: 1074 ---AVQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLA--LVMSIHDELVYAVPRVAIDEV 1128

Query: 941  SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
             + +   +E      + L VPL V+++V N + E
Sbjct: 1129 VRGVQRILEDQAR-VLRLAVPLPVSVRVGNCFGE 1161


>gi|297851880|ref|XP_002893821.1| At1g34380 [Arabidopsis lyrata subsp. lyrata]
 gi|297339663|gb|EFH70080.1| At1g34380 [Arabidopsis lyrata subsp. lyrata]
          Length = 335

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP--LVRLATQAFGIPAIEIQGFEAD 118
            AVI        R E+ P YKA+R         + P   V    +   +P + + G EAD
Sbjct: 101 IAVIDGEEGNQRRRELLPSYKAHRKSPNPGRYSKRPHQFVDEVLRKCNVPVVRLDGHEAD 160

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGI 174
           D++AT    A + G+   I S DKD  QL+S    +        +     ++H   ++  
Sbjct: 161 DVVATLMEQAVQRGYRAVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNC 220

Query: 175 PPEKMVCLQALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENILINAS--RIKQKK 228
            P+  +  + + GD +D +PG    +P  G KTA  L++++G+LE++L  A+   + +  
Sbjct: 221 DPQSDLSFRCIMGDEVDGVPGIQHVVPAFGRKTAMKLVRKHGSLESLLSAAAVRTVGRPY 280

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALE 280
            +E + +YA+  R + +++ L+ DV + I  E L+  D   +   L SF   L 
Sbjct: 281 AQEALTKYADYLRRNYQVLALKRDVRVEIQEEWLVERDPSNDAEVLSSFFSTLH 334


>gi|71746478|ref|XP_822294.1| mitochondrial structure specific endonuclease I (SSE-1)
           [Trypanosoma brucei TREU927]
 gi|70831962|gb|EAN77466.1| mitochondrial structure specific endonuclease I (SSE-1), putative
           [Trypanosoma brucei]
 gi|261331952|emb|CBH14945.1| mitochondrial structure specific endonuclease I (SSE-1), putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 295

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 125/296 (42%), Gaps = 33/296 (11%)

Query: 1   MQKENH-LFLVDGSSFIYRAFYATPLLSRKH----------DGLPVNAI-AGFC-NMLWK 47
           M      + L+DG + I+R +Y     +R +          +     AI   F  + L +
Sbjct: 1   MSVRERAVVLIDGPALIHRWYYRWLYTNRNNPVDVKRFAITNARHTIAIAHSFDPSHLMQ 60

Query: 48  LLQNSRKESI--ASH--FAVIFDYPAVTFRNEIYPDYKANRP--KIPEMLLPQLPLVRLA 101
            L + + E      H    + FD      R EIYP YK NR   ++ E L     +    
Sbjct: 61  HLLSPQVEYTHTPKHNKLIICFD-QGDGGRREIYPKYKLNREGREVGEELGVIQKVATKV 119

Query: 102 T------QAFGIPAIEIQ----GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP- 150
                      +P  + +      EADD+I+T     ++      I+S D DL QL+   
Sbjct: 120 FLGEPKNTLLIVPHFDSKLKNVNAEADDMISTLAQHTQRIRIPTVIMSHDHDLYQLIDEA 179

Query: 151 -TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                YD   +  I  + VI++ G+ P+ +   + L GD  DNIPG+ GIG   A  LL+
Sbjct: 180 SRCYYYDIRTKHLISEKGVIERLGVHPKLVRDYKCLAGDPSDNIPGVKGIGKTRALQLLK 239

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           +YG+LE +L   ++ +     + +    E A LSRKLV    D P  + +    L+
Sbjct: 240 KYGDLEGVLTKGTKKQGGVVGDLLRAGVEGAELSRKLVE-LRDCPSVLRVCEFFLK 294


>gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 655

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 107/673 (15%), Positives = 213/673 (31%), Gaps = 126/673 (18%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
                S  I T +    +       +    + +  +  +     D       D      +
Sbjct: 6   NPSVLSIDIETFS----NVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPI 61

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY------------------GISMRGFE 487
              +L  L     +   +K  +N  +++  L  Y                   + + G  
Sbjct: 62  PTTVLKAL----IDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHL 117

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D   ++ VL+ G    +      ++ S   K    +   +  + +    +   +      
Sbjct: 118 D--GVANVLNLGDQKDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAY-CR 174

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
             +++   LR +L    +    +RL     ++  +M   G++ID DL++Q     +K   
Sbjct: 175 QDVEVERALRKRLASNPIPEKEQRLW----ELDQRMNDEGVRIDTDLVRQAIQLDAKEQA 230

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            L E    ++G + N +S  QL D L ++          +G  K    DL Q +   + +
Sbjct: 231 LLLEEAKQITGLE-NPNSVAQLRDWLTSRGI------ETSGLAKKQVSDLLQTDLPGD-V 282

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK- 726
            + ++  + +SK      +++   I K            +  TGR A       N+P   
Sbjct: 283 RRVLILRQMMSKTSVKKYEAMDRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHR 342

Query: 727 ---------------------------TDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                                        L Q  R AFI     + + +D+S IE R++A
Sbjct: 343 IGDLDEARQLVKTGNYELITTLYGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIA 402

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ--MRRHAKTINFSIIYGISPFRL 817
            +A      +VFE    I+   A+++FGV IE+++    +R+  K    ++ YG +   L
Sbjct: 403 WLAGERWRMKVFEGHGKIYEASASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGAL 462

Query: 818 ATQ----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ------------------ 855
                  + +   E    +K +    P I       +    +                  
Sbjct: 463 TQMGALEMGLSEDELPALVKAWRKANPNIVNLWYDLEKSAFEAVKWQKVVTAKSGIQFYG 522

Query: 856 -NGYVETIFGRRIHYDEIN----------------------SPKSSIRNINERAAINAPI 892
            +G +            +                       S +    +          +
Sbjct: 523 GSGLLRARLPSGRSLSYVRPQIGIDERFGREEITYEGVMQGSKQWGRISTYGGKIAENMV 582

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           Q  A D    AM+ +  +        ++   +HDE+V EVP E+   A   I   M +  
Sbjct: 583 QAIARDCLAEAMLRLDAA------GYQIRFHVHDEVVIEVPNEQ--DAKADIERIMSEPI 634

Query: 953 LPKINLRVPLKVN 965
                L  P+  +
Sbjct: 635 DWAPGL--PMNAD 645


>gi|163937889|ref|YP_001642775.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
 gi|163865744|gb|ABY46800.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
          Length = 359

 Score =  155 bits (391), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 122/322 (37%), Gaps = 67/322 (20%)

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQV 770
           S   NLQNIP ++  G ++R AF        ++AD SQIE RI+AHI         L  +
Sbjct: 28  SKGSNLQNIPARSKEGARVRGAFKPQEGWFYLAADLSQIEPRIMAHIMWTIYGDNSLRSI 87

Query: 771 FENSLDIHRMVAAEIFGVNIEKV---------SPQMRRHAKTINFSIIYGISPFRLATQL 821
           F    D++  +A  +F ++ +           + + R   KT   +  Y          +
Sbjct: 88  FTAGRDLYTTMAMMVFNLDEKYCVDKAYDPTGTFKPRAMMKTGVLAKSYDQQVGNFCNTM 147

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR- 880
            +       + +++   FP     +   + F    GY ET++GR+  + ++      ++ 
Sbjct: 148 GVSIEVGNMFYEKFDTAFPSFINMVRDKRKFAYDKGYSETLYGRKRRFPQLAEWSKIVKR 207

Query: 881 ----------------------------------------------NINERAAINAPIQG 894
                                                            ERA+ N+ IQG
Sbjct: 208 NERKLMDLYIERARIRKKVVKSRYDFERLDTLEELIKPMAEMRNMVGYWERASFNSVIQG 267

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT-TASQIIVHSMEKACL 953
           + ADI +  MI +++  +       +   IHDE+  EVP +++T     +I   M K   
Sbjct: 268 TGADILKLNMIRLYRECQKRG--WYLNASIHDEIKVEVPRKDLTLENCDLITDIMTK--- 322

Query: 954 PKINLRVPLKVNIKVSNNWQEE 975
             + L +PLK +  +   W +E
Sbjct: 323 -SVELSLPLKSDTVIETVWGKE 343


>gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14]
          Length = 651

 Score =  155 bits (391), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 116/618 (18%), Positives = 212/618 (34%), Gaps = 123/618 (19%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
           F V      ++V+       K  L ++IL  L     ++  +K   N  ++++ L     
Sbjct: 37  FAVSVNNGPVTVYD----LSKEKLPQDILEALV----DDRVIKWAFNASFERVCLSN--- 85

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKI--- 533
            ++ +   +L+   L        +   A   L  + + +     LK +K     D I   
Sbjct: 86  WLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSLEGVGTVLKLKDQKMREGADLIRYF 145

Query: 534 -----------SDSQVQEHAIENSNVILQLWLL--LRPKLIVEKLLHVYERLDKPMIDVV 580
                        ++   H   +       +    +  +L +++ L  +   D    + +
Sbjct: 146 CVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRRDVEVELAIKERLKNFPVPDFVWDEYL 205

Query: 581 SQMEIT--GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
               I   GI ID D +K      +++   ++E +  L+  + N +S  Q+   L     
Sbjct: 206 QDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEELKALTSLE-NPNSVLQMIGWLREHG- 263

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                   T          E +   D+   K +   +Q +K   +   ++ N + K  + 
Sbjct: 264 -------VTTDSLDKKAVKELLKTVDDKTSKVLKLRQQAAKSSVSKYQAMMNCVCKDGRA 316

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP---------------------------IKTDLGQ 731
              F    +  TGR A     LQN+P                            +  L Q
Sbjct: 317 RGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARKLFKTGDLEATELLYDTQDTLSQ 376

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
            IR AF+    KK I  D+S IE R+L+H+A      +VFE   DI+ M A+++FGV +E
Sbjct: 377 LIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRSKVFELGKDIYCMSASQMFGVPVE 436

Query: 792 KV--SPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           K   + ++R+  K    +  YG S   L    A  + +   E    +  +    P I   
Sbjct: 437 KHGQNSKLRQKGKIAELACGYGGSVGALKAMGALDMGLSEEELQPLVNSWRQANPNIVLL 496

Query: 846 IEK----TKNFVRQNGYVETI---FGRRIHYDEINSPKSSIRNI---------------- 882
                   K  V++     T    F  R     I  P                       
Sbjct: 497 WWDVDNAVKTAVKEQIPTSTHGIQFEVRSGILFITLPSGRKLAYIKPRIGENQFGGESVT 556

Query: 883 ---------NERAAINAP------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
                     ER     P      +Q  + DI   ++    K L++     K++  +HDE
Sbjct: 557 YEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSL----KQLKE----FKIVGHVHDE 608

Query: 928 LVFEVP-EEEITTASQII 944
           ++ E P E++I   + ++
Sbjct: 609 VIIECPMEQKIDKIASLM 626


>gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1]
          Length = 658

 Score =  154 bits (390), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 125/683 (18%), Positives = 235/683 (34%), Gaps = 147/683 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + +    + T +            +         +  + ++ ID       D    + + 
Sbjct: 1   MKTIEIDLETRS----DRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-------------------G--ISMRG 485
           ++IL+ L     +E  +K   N+ ++++ L RY                   G  +S  G
Sbjct: 57  EDILTALV----DESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVG 112

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS----SIPIDKISDSQVQEH 541
           ++  M+    L     S  +AS A   L   ++++ + +       +P D + D   Q H
Sbjct: 113 WQCTMIHCRTLG---LSSTLAS-AGAALKLEQQKMPEGKALIKYFCVPYDTV-DGIPQFH 167

Query: 542 AIENSNVILQLWLLLRP--KLIVEKLLHVYERLDKPMIDVVSQ--------MEITGIQID 591
           +  ++    + W   +   K  VE  L +  RL +  +             +   GI++D
Sbjct: 168 SPADA---PEKWETFKAYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVD 224

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
            +L++      ++   +L   +  L+G + N +S  QL + L  +  + S    K     
Sbjct: 225 MELVEAALTLDAQAKATLSSEMRRLTGIE-NPNSVYQLLEWLGEQ-GYKSDCLDK----- 277

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
             A   E +    +P+   +     LSK       ++       ++    F    ++ TG
Sbjct: 278 --AAVKELLKTVKDPVKSVLELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTG 335

Query: 712 RLASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTK 743
           R A     LQN+P                            +   L Q IR AF+  P  
Sbjct: 336 RWAGRIIQLQNLPQNHIPDLTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGY 395

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHA 801
           K I AD+S IE R++A +A        F N  DI+   A+++FGV + K  V+ ++R+  
Sbjct: 396 KFIIADFSAIEARVIAWLAGEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKG 455

Query: 802 KTINFSIIYGISPFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEYI----EKTKNFV 853
           K    +  YG S   +       L +  SE    +  +    P I ++     +  K  +
Sbjct: 456 KVAELACGYGGSVGAMKAMGGDALNLSDSELKQIVTDWRDASPNIVKFWWTVDDAVKKAI 515

Query: 854 RQNGYVETI----------------FGRRIHY--DEIN----------------SPKSSI 879
           +Q    ET                  GR++ Y   +I                 S K   
Sbjct: 516 KQKITTETHGLQFSYQSKMLFITLPSGRKLCYAHPQIGENQFGGESVTYMGVGASKKWER 575

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE-EIT 938
                   +   +Q  A D+   +M ++            ++  IHDE++ E      + 
Sbjct: 576 IESYGPKFVENIVQAVARDLLMFSMQTMR--------CCFIVGHIHDEMIIEADRRMSLD 627

Query: 939 TASQIIVHSMEK--ACLPKINLR 959
                    ME+  A    + LR
Sbjct: 628 EVC----RQMERTPAWAEGLLLR 646


>gi|109521836|ref|YP_655732.1| gp52 [Mycobacterium phage Qyrzula]
 gi|91980780|gb|ABE67498.1| gp52 [Mycobacterium phage Qyrzula]
          Length = 600

 Score =  154 bits (390), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 101/525 (19%), Positives = 182/525 (34%), Gaps = 86/525 (16%)

Query: 465 IGHNIKYDKLVLHRYGI----SMRGFEDIMLMSYVLDSGR-----SSHDIASIAQKWLSY 515
           + HN  +D   L  +G+     +R   D +L++                + + A   L  
Sbjct: 91  VFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLLGL 150

Query: 516 TRKEILKSRKSSIPID------------KISDSQVQEHAIENSNVILQLWLLLRPKLIV- 562
              ++    + +                 I     ++ A+ ++   L L  +LR K +  
Sbjct: 151 V--DVAGGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVEW 208

Query: 563 --------------EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EISKNLL 607
                          + L V E  +     V+ Q    G+ +D+D L +    E  K L 
Sbjct: 209 TTSHPFAEFGATTEAEALEVLEVQEIAH-WVMLQRSARGLAVDRDYLDEYREREHDKRLE 267

Query: 608 SLEENI-YDLSGEKFNLSSPKQLGDILFTKLKFPS-GAKTKTGQWKTTAQDLEQINCGDN 665
                  YDL G          L   L  + + PS   +T  G      + LE +   D+
Sbjct: 268 HAAFLAQYDLEGGT---GKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETL---DH 321

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P+           K+   Y + +        +       L ++ TGR++   P LQ  P 
Sbjct: 322 PVAAAQRALAVSDKVLG-YLEKVARQAAVTGRCHPQVAILGASATGRMSYGSPELQQFP- 379

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ-VFENSLDIHRMVAAE 784
                 K  R  I    + L S D++QIE   +A +A         FE   D++  +   
Sbjct: 380 ------KDARPIIVDDGQGLTSVDWAQIEPVTMALMAGDREFLAPFFEKDADLYEPI-MR 432

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
             G++        R  AK I  + +YG     +A ++      AA   ++     P   +
Sbjct: 433 ACGID--------RPMAKVILLATMYGQGARSMARRIGHTEESAAQIRRQMLAAMPASRD 484

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           ++ K ++    +G + T  GR +  D+  S            A+N   QGSA D+    +
Sbjct: 485 FMAKVESIAITHGRIVTGGGRILPVDQQGS----------YRAVNYICQGSAYDVLAHTI 534

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           + + +      L+  + L +HDELV +         +  + H M 
Sbjct: 535 VRLDEV----GLSGHVQLAMHDELVVDT------DVAAEVEHIMM 569


>gi|254388656|ref|ZP_05003889.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197702376|gb|EDY48188.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 562

 Score =  154 bits (389), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 145/449 (32%), Gaps = 92/449 (20%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ +QV   +           + L  L + +  
Sbjct: 150 MRLLTAAESAGMLVAAEMHRAGLPWRADVHRQVLDGLLGERYAGGGEPRRLAELADEVSA 209

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +               +L             +  +    ++   D+P +  +LE++
Sbjct: 210 AFGRRVRP------------ELSADVLKAFARAGVRLRSTRRWELEGIDHPAVPPLLEYK 257

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I   +    L + +  R  R    Y     ++GR  +L      IP        IR
Sbjct: 258 KLYRIWVAHGWGWLQDWV--RDGRFRPAYQPGGAVSGRWTTLGGGALQIPK------VIR 309

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++    +L+ AD  Q+E R+LA +++   L +V  +  D++  ++   F  +     
Sbjct: 310 RAVVADAGWRLVVADVDQMEPRVLAAVSRDPGLMEVAAHEDDLYTRLSDRAFSGD----- 364

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG +       L                RFP    Y+++      
Sbjct: 365 ---REQAKLALLGAVYGQTSGDGLKNL-----------AALRRRFPAAVAYVDEAARAGE 410

Query: 855 QNGYVETIFGRRIH----------------------------------YDEINSPKSSIR 880
           +   V T  GR                                          S  +  R
Sbjct: 411 EGRLVRTWLGRTSPRAVGRDGDDEAGIPQEAPDPAGDPAAGAGPATGFTPGYASSDARAR 470

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               R   N  +QGSAA      ++          +  +++   HDE++   P +E    
Sbjct: 471 G---RFTRNFVVQGSAA--DWALLLLAAVRQALVGMRAELVFFQHDEVIVHCPADEADAV 525

Query: 941 SQIIVHSMEKA---CLPKINLRVPLKVNI 966
            + +  + E A      +  +R P+   +
Sbjct: 526 VEAVRQAGETAGEVAFGRTPVRFPMTTAV 554


>gi|294813269|ref|ZP_06771912.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|326441791|ref|ZP_08216525.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325868|gb|EFG07511.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 571

 Score =  154 bits (389), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 145/449 (32%), Gaps = 92/449 (20%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ +QV   +           + L  L + +  
Sbjct: 159 MRLLTAAESAGMLVAAEMHRAGLPWRADVHRQVLDGLLGERYAGGGEPRRLAELADEVSA 218

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +               +L             +  +    ++   D+P +  +LE++
Sbjct: 219 AFGRRVRP------------ELSADVLKAFARAGVRLRSTRRWELEGIDHPAVPPLLEYK 266

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I   +    L + +  R  R    Y     ++GR  +L      IP        IR
Sbjct: 267 KLYRIWVAHGWGWLQDWV--RDGRFRPAYQPGGAVSGRWTTLGGGALQIPK------VIR 318

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++    +L+ AD  Q+E R+LA +++   L +V  +  D++  ++   F  +     
Sbjct: 319 RAVVADAGWRLVVADVDQMEPRVLAAVSRDPGLMEVAAHEDDLYTRLSDRAFSGD----- 373

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG +       L                RFP    Y+++      
Sbjct: 374 ---REQAKLALLGAVYGQTSGDGLKNL-----------AALRRRFPAAVAYVDEAARAGE 419

Query: 855 QNGYVETIFGRRIH----------------------------------YDEINSPKSSIR 880
           +   V T  GR                                          S  +  R
Sbjct: 420 EGRLVRTWLGRTSPRAVGRDGDDEAGIPQEAPDPAGDPAAGAGPATGFTPGYASSDARAR 479

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               R   N  +QGSAA      ++          +  +++   HDE++   P +E    
Sbjct: 480 G---RFTRNFVVQGSAA--DWALLLLAAVRQALVGMRAELVFFQHDEVIVHCPADEADAV 534

Query: 941 SQIIVHSMEKA---CLPKINLRVPLKVNI 966
            + +  + E A      +  +R P+   +
Sbjct: 535 VEAVRQAGETAGEVAFGRTPVRFPMTTAV 563


>gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
 gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
          Length = 559

 Score =  154 bits (389), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 169/510 (33%), Gaps = 73/510 (14%)

Query: 488 DIMLMSYVLDSGRSSHD----IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           D+ L  Y+L +    HD    + +   +             +   P ++ +  ++    +
Sbjct: 74  DLALTEYLLLAHAGRHDEPRGLGAAYARARGLPPPAD-PGAEHREPDEEPTLFELHRSGL 132

Query: 544 ------ENSN--VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
                  ++   V+      LR +   E+L  +    +       ++M   G+    D  
Sbjct: 133 PPGVDPRDAAETVLADQERRLREQTHPERL-RLLIAAESASALAATEMSADGLPWCADAH 191

Query: 596 KQVSAEISK----------NLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAK 644
           + +   +             L  L E I     +   N   P  +   L           
Sbjct: 192 RDLLTTLLGPRPPAGQRPPKLAELAERITAAFNDPTVNPDHPGSIVRAL----------- 240

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            +       +     +   D+P I  +LE+++L+++ S +  +  +    R  R    Y 
Sbjct: 241 -RRDGVDVPSTRAHVLRHVDHPAIAPLLEYKELARLHSAHGWAWLDQWV-RDGRFRPVYV 298

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
           +   ++GR AS       IP        +R    + P   L+ AD +Q+E R+LA ++  
Sbjct: 299 VGGVVSGRWASRGGAALQIPK------LLRGCVRADPGWTLVVADAAQLEPRVLAALSGD 352

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             L +V     D++  +   +FG    +     R  AK    S +YG             
Sbjct: 353 RRLAEV-SADADLYTSLTHTLFGRTPIE---DDRARAKIAMLSAMYGG-----------T 397

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR---------RIHYDEINSP 875
             EAA  +     RFP    ++E       + G V +  GR         R         
Sbjct: 398 SGEAAPLLSLLRRRFPHAVSFVEHAAREGERGGLVRSRLGRTSLPPPEAWRTLTGGSGDE 457

Query: 876 KSSIRNI--NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
            S+ R      R   N  +Q SAAD T   + ++ + L        ++   HDE++   P
Sbjct: 458 NSARRAARDWGRFTRNFVVQASAADWTAVLLATLRRRLPA---PAHLVFFQHDEVLVHCP 514

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLK 963
            E        +  S  +A         P++
Sbjct: 515 TELAGQVQGCLADSATEATTLVFGPSCPVR 544


>gi|9634020|ref|NP_052094.1| 5B protein [Yersinia phage phiYeO3-12]
 gi|6599011|emb|CAB63615.1| 5B protein [Yersinia phage phiYeO3-12]
          Length = 384

 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 133/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           F  SS   +   L      P    T+ G      + LE +   D      I  I E+  +
Sbjct: 14  FKPSSRDHIQKKLQEAGWVP-EKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMI 72

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++    + +H   +    +TGR     PNL  +P +++  G++ 
Sbjct: 73  QKRIGQAAEGDKAWLRYVQDDGK-IHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQC 131

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    + ++  +I
Sbjct: 132 RSAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYANEILNGDI 185

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 186 HTKNQNAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 245

Query: 846 IEKTKNFVRQN----GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +  +  +    G  + +  +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 246 REAIQQSLVNSSAWIGGEQKVQWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 303

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  IHDE+      EE+      +     +     
Sbjct: 304 LWIIKTEEMLIEKGLKHGWDGDFAQMGWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEH 363

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 364 WNFRCRLDTEGKIGPNWA 381


>gi|261334514|emb|CBH17508.1| DNA polymerase theta, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 846

 Score =  154 bits (388), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 47/311 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIK------------------TDLGQKIRRAFISP 740
           VH  +++  T TGRL    PNLQ +P                    T+    +R  +   
Sbjct: 535 VHPHWAVHHTSTGRLYCSRPNLQTVPKTAQKCTYVSPLTSDYGLLFTNPEWTMRHLYGPA 594

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRR 799
           P   L+S D++Q+ELR+LAH++    L Q   +  D+   +   + G+ + E+V P +R 
Sbjct: 595 PGCVLLSFDFNQMELRVLAHLSGDELLIQHLSSEYDVLSAMTRHLTGLSDDEQVPPHLRE 654

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAAD------------YIKRYFHRFPGIHEYIE 847
             K + + + YG+    +  +++I    A               ++ +  R+P   +++ 
Sbjct: 655 TVKVVVYGLFYGMGLATMKERVKILMDSAHSVPSSQRKITADTLLRAFHQRYPAAGKFLT 714

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI-QGSAADITRRAMIS 906
           + +              R +    IN   S       R    A I QGS++ + + AM+ 
Sbjct: 715 RARIRAF-------HEARCVTLTGINDLSSEKDGNRRRQHSIARILQGSSSTLFQSAMVK 767

Query: 907 VHKSLED--HKLAT---KMLLQIHDELVFEVPEEEITTASQIIVHSM-EKACLPKINLRV 960
           VH+   D    L      ++L IHDEL++ V E  +   ++ I   M E+A +   +LRV
Sbjct: 768 VHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVAREIKGIMVEQAQV--FSLRV 825

Query: 961 PLKVNIKVSNN 971
           PL+V++KV   
Sbjct: 826 PLRVSVKVGKT 836


>gi|328866460|gb|EGG14844.1| hypothetical protein DFA_10717 [Dictyostelium fasciculatum]
          Length = 1213

 Score =  154 bits (388), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 121/636 (19%), Positives = 219/636 (34%), Gaps = 120/636 (18%)

Query: 405  KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
            + I +A+  L   D              +           +  +    L +  ENE   K
Sbjct: 618  EAIGVALWILSYNDTNYTSKNMALEKYFLPIVYQGFENRPIAIKNTELLIRILENEAIKK 677

Query: 465  IGHNIKYDKLVLHRYG--ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEI 520
            +  N +    +   Y    S +   D  +++++        D++++  ++   S+ + E+
Sbjct: 678  VSFNCQESFKIFFAYNTYFSPKNIWDPKILAWMYKPESKRVDMSTLVVEYQIDSHDKLEM 737

Query: 521  LKSRKSSIPIDKISDSQ---------VQEHAIENSNVIL--QLWLLLRPKLIVEKLLHVY 569
                K+   +D+ +D+          V  +    +++     L L+L  KL   KL  + 
Sbjct: 738  ANVIKN---LDQHTDNNNNNINPSMTVSNYTCLANDIRNGSILQLILEHKLSDAKLEPLQ 794

Query: 570  ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE------KFNL 623
               +  +I ++S+ME  G+    + LK     I   L ++ +  + L          F L
Sbjct: 795  ---EMQIIPILSKMEYYGVSFCSEALKTCQVHIDSLLENITKQFHLLRDGLGIKMDDFGL 851

Query: 624  SSPKQLGDILF-----TKLKFPSGAKTKTGQWKTTAQDLEQINC-----GDNPIIKNILE 673
            S   Q G +L         + P     K    +  A+    +       GD   +     
Sbjct: 852  S---QRGVVLSCINQIKPSRIPQIPDAKAQTLRKFAEIDLSLKEEKAKNGDMENLIMACR 908

Query: 674  WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP-------NLQNIPIK 726
                 K  S + +          Q ++T ++   T TGRL+S  P       N+ NI + 
Sbjct: 909  IYLDHKRFSQFNNIFVKKYISVGQNIYTSWNHTGTATGRLSSSSPNVQQIPRNVANIKVS 968

Query: 727  TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                           +        +   + I A           F  +   + MVA    
Sbjct: 969  DKEDGDGNDYDDDDVSDDEEEGTTNASTVHINA--------RDCFR-TRPGYTMVA---- 1015

Query: 787  GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
                                 + Y     R+             + +     FP + ++I
Sbjct: 1016 ---------------------LDYSQIELRVMAHQSDDEHLLHFFQQD--ADFPKVKKFI 1052

Query: 847  EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
              TK   ++  YV T+ GR   +    SP  +     +R ++N+ IQGSAADI + AMI 
Sbjct: 1053 NDTKADTKKLKYVRTLLGRHRTFY---SPHLTP-GEIDRQSVNSIIQGSAADIIKAAMIR 1108

Query: 907  VHKSL--------------------------EDHKLATKMLLQIHDELVFEVPE---EEI 937
            +++ L                          +D  +  ++LLQIHDEL+FE+P    E  
Sbjct: 1109 INQLLIQESKEVNQILQQQGQQQGQTNQQQNKDDIIEARLLLQIHDELIFEIPNVMLEIK 1168

Query: 938  TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
                + I H ME        L+V LKV +K+ N+W 
Sbjct: 1169 PDILEKIKHMME----CSTELKVDLKVAMKIGNSWG 1200


>gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 646

 Score =  154 bits (388), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 104/643 (16%), Positives = 214/643 (33%), Gaps = 128/643 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + S S  I T       +      +    +  D    +    +D       D T    L 
Sbjct: 1   MKSLSIDIET----YSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-----G--ISMRGFEDIMLMSYVLDSG 499
            ++++ L     +E  +K   N  ++++ L R+     G  I+   ++  M+ +  +   
Sbjct: 57  SDVITALT----DETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLP 112

Query: 500 RSSHDIASIAQ-------------KWLSYTRKEILKSRKSS---IPIDKISDSQVQEHAI 543
            S   + S+ +             K+ S        + + +   +       S  +++ I
Sbjct: 113 LSLEGVGSVLKLDKQKLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNI 172

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            +    + +   L    + + +   Y         +  ++   G+ +D  L+++  A   
Sbjct: 173 RDIETEMSIQEKLTRFPVQDSIWDEYH--------LDQEINDRGVALDMTLVQEAIAMDG 224

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           ++   L   +  L+ E  N +S +Q+   L            K           E +   
Sbjct: 225 RSRSELTTAMKHLT-ELDNPNSVQQMKQWLADNGMETDTLGKKI--------VAELLKTA 275

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
              +   +   +QL+K       ++ N +    +    F    +  TGR A     +QN+
Sbjct: 276 PLDLADVLSLRQQLAKSSVRKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNL 335

Query: 724 P----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           P                            +   L Q IR AF+     +LI +D+S IE 
Sbjct: 336 PQNHLEDLAEARALVRFGDFDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEA 395

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           R++A +A       VF    DI+   A+++F V +EK  ++  +R+  K    ++ YG S
Sbjct: 396 RVIAWMAGEEWRQDVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGS 455

Query: 814 PFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ----------NG-- 857
              L    A  + +   E    +  +    P I ++         +          +G  
Sbjct: 456 VGALKAMGALDMGLEEDELPQLVDAWRQANPCIVKFWWDVDKAAMEAVRYKRTNSTHGIT 515

Query: 858 --------YVETIFGRR-----------------IHYDEINSPKSSIR-NINERAAINAP 891
                   ++    GRR                 I Y+ + + K   R +      +   
Sbjct: 516 FSCQSGMLFITLPSGRRLAYVKPRIGENKFGGQCITYEGVGATKKWERLDSYGPKFVENI 575

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
           +Q +A DI   AM ++            +++ +HDE+V E   
Sbjct: 576 VQATARDILCNAMQTLQ--------HCSIVMHVHDEIVIEADP 610


>gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  154 bits (388), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 105/656 (16%), Positives = 220/656 (33%), Gaps = 129/656 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  I T       +             DD    +    +D       D T    + 
Sbjct: 1   MKQLSIDIET----YSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSH 503
            +I+  L    ++   +K   N +++++ L R   + +   G+    + S  L    S  
Sbjct: 57  SQIIQAL----DDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLR 112

Query: 504 DIASIAQKWLSYTRKEILKSRKS--------SIPIDKISDSQVQEHAIENSNVILQLWLL 555
           D+ ++    L   R++I   ++                + ++   +   +     + +  
Sbjct: 113 DVGTV----LGLPRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYN- 167

Query: 556 LRPKLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLK---QVSAEISK 604
              +  VE  + + ++  +  +         +   +   GI+IDQ L+    +   E   
Sbjct: 168 ---QRDVEVEMEITQKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHA 224

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
             L   + +  L+    N +SP QL + L  +     G +T +    + AQ L+      
Sbjct: 225 QYLQTSQQLTGLA----NPNSPLQLKNWLHQQ-----GVETDSLAKASVAQLLQTTTGTV 275

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           + ++        LSK       ++   + K            +  TGR A     +QN+P
Sbjct: 276 HQVLALRQL---LSKSSVKKYQAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLP 332

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       +   L Q IR AFI         AD+S +E R
Sbjct: 333 RNSMPDLEEARALVKQGNTTALAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEAR 392

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISP 814
           ++A ++        F  + DI+   A+++FGV + K  ++ ++R+  K    ++ YG S 
Sbjct: 393 VIAWLSGEEWRQAAFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSI 452

Query: 815 FRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ--------------- 855
             L    AT+L +   E    ++ + +  P I ++        ++               
Sbjct: 453 GALKAMGATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGMKF 512

Query: 856 -----NGYVETIFGRRIHYDE------------INSPKSSIRNINERAAINA------PI 892
                  ++    GR + Y +            I    ++     +R            +
Sbjct: 513 IYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIV 572

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE-ITTASQIIVHS 947
           Q ++ D+   AM  +  +         +++ IHDE V + P +  + T  +I+   
Sbjct: 573 QATSRDLLAGAMRRLETA------GNPVVMHIHDEAVIDAPTDRSLDTIVKIMTEV 622


>gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [butyrate-producing bacterium SM4/1]
          Length = 646

 Score =  154 bits (388), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 107/643 (16%), Positives = 217/643 (33%), Gaps = 128/643 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  + T +            +    +  D    +    +D +     D      + 
Sbjct: 1   MQTLSIDLETYSDQPLAKT----GVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-----G--ISMRGFEDIML-MSYV--- 495
            EIL  L    E++   K   N  ++++ L R+     G  +    ++  M+  +Y+   
Sbjct: 57  SEILCAL----EDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLP 112

Query: 496 --LDSGRSSHDIAS--IAQ-----KWLSYTRKEILKSRKSSIPIDKISDSQ---VQEHAI 543
             L+   +   +    +A+     K+          + + +  + K S  +    +++ I
Sbjct: 113 LSLEGAGAVLGLEKQKLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNI 172

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            +    + +   L    + + +   Y         +  ++   G+ +D +L++Q      
Sbjct: 173 RDVETEMSIQARLLKYPVPDSVWEEYH--------LDQEINDRGVGLDMELVRQAIQMDG 224

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           ++   L + + +L+    N +S +Q+   L            K           E +   
Sbjct: 225 RSRSELTQAMKELTSLD-NPNSVQQMKQWLADNGVETDTLGKK--------AVAELLKTA 275

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
              + K +   +QL+K       ++   +    +    F    +  TGR A     +QN+
Sbjct: 276 PQQLQKVLTLRQQLAKSSVKKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNL 335

Query: 724 P----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           P                            +   L Q IR AF+    +K I AD+S IE 
Sbjct: 336 PQNHLDDLTEARGLVRAGGFDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEA 395

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           R++A +A       VF    DI+   A+++FGV +EK  V+  +R+  K    ++ YG S
Sbjct: 396 RVIAWLADEKWRQDVFAEGKDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGS 455

Query: 814 PFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----------RQNG-- 857
              L    A ++ +   E    +  +    P I ++       V          + +G  
Sbjct: 456 VGALKAMGALEMGLSEDELPALVSAWRQANPKIVQFWWAVDRAVMDAVTRKTTTKTHGII 515

Query: 858 --------YVETIFGRRIHY------------DEINSPKSSIRNINERAAINAP------ 891
                   ++    GR + Y            D I           ER     P      
Sbjct: 516 FSARNGMLFITLPSGRSLSYVKPKIGENRFGGDCITYEGVGGTKKWERIDSYGPKFVENI 575

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
           +Q ++ DI   AM ++            +++ IHDE+V E   
Sbjct: 576 VQATSRDILCYAMKTLR--------CCSIVMHIHDEVVIEADR 610


>gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
 gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
          Length = 644

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 107/619 (17%), Positives = 211/619 (34%), Gaps = 125/619 (20%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMR--GFEDIML-MS 493
           D      +  EI+ YL     ++  +K  +N  +++  ++R+ G+S++  G+   ++  S
Sbjct: 48  DLASGEKIPDEIMEYLT----DDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQAS 103

Query: 494 YV--------------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD-SQV 538
            +              LD  + S     I    +     +    R  ++P D        
Sbjct: 104 MLSLPLSLEGVGEALNLDKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELF 163

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           + +   + +V  Q+   L    I ++   +Y         +  ++   GI +DQ+L+   
Sbjct: 164 KTYCTRDVDVEKQIRNKLAKFPIPDREQKLYC--------MDQRINDRGIMVDQELIGHA 215

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            A       ++ +  Y++SG + N +S  QL D L          K         A   E
Sbjct: 216 VACDLLYKETVTKKAYEISGLE-NPNSVSQLKDWL--------NEKGIEVDSLAKAAVEE 266

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +      + + +     +SK      +++   +    +         +  TGR A    
Sbjct: 267 LVENTQGDVAEMMKLRLAMSKTSVKKYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLV 326

Query: 719 NLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADY 750
            + N+P                                L + IR AF++ P  + I +D+
Sbjct: 327 QIHNLPQNHMEDLELARSLVKEGRYDLVELLYDSTPDVLSELIRTAFVARPGCRFIVSDF 386

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM--RRHAKTINFSI 808
           S IE R++ ++A    + + F  +  I+   A+++F + I +++     R   K  + + 
Sbjct: 387 SAIEARVMGYLAGEGWVMEEFRGAGKIYEQTASKMFHIPIGEITKGSPYRARGKVASLAC 446

Query: 809 IYGISPFRLATQLR---IPRSEAADYIKRYFHRFPGIHEYIEK----TKNFVRQN----- 856
            YG +   L +      +   E    ++ +    P I  Y  +     K  V++      
Sbjct: 447 QYGGAEGALISMGALNFVEEEELKGLVQSWRTANPHIVNYWYEIDGAVKAAVKERKMTKV 506

Query: 857 ------------------GYVETIFGRRIHYDEINSPKSSIRNINER-----------AA 887
                             G V +    R+  +   S   S   I                
Sbjct: 507 GMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFGSESVSYEGIGTNRKWTRIESYGAKF 566

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--EEITTASQIIV 945
               +Q +A D+   AM+     LE       ++  IHDE+V EVPE    +   + I+ 
Sbjct: 567 CENIVQATARDVLAEAMLR----LEKKGFD--IVCHIHDEVVLEVPEGTSSVEEVNGIM- 619

Query: 946 HSMEKACLPKINLRVPLKV 964
                A  P     +PLK 
Sbjct: 620 -----AVCPDWCEGLPLKA 633


>gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
 gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
          Length = 644

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 105/653 (16%), Positives = 222/653 (33%), Gaps = 123/653 (18%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  I T      ++      +       D    +    ID       D T   ++ 
Sbjct: 1   MKQLSIDIET----YSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSH 503
            +++  L    ++   +K   N +++++ L R   + +   G+    + S  L    S  
Sbjct: 57  PQVIKAL----DDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLR 112

Query: 504 DIASIAQKWLSYTRKEILKSRKS--------SIPIDKISDSQVQEHAIENSNVILQLWLL 555
           D+ ++    L   R++I   ++                + ++   +   +     + +  
Sbjct: 113 DVGTV----LGLPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYN- 167

Query: 556 LRPKLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQVSAEISKNLL 607
              +  VE  + + ++L+   +         +   +   GI+IDQ L+       +    
Sbjct: 168 ---QRDVEVEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHD 224

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
              +    L+G   N +SP QL D L  +     G KT +    + AQ L+      + +
Sbjct: 225 QYLQTAKKLTGLA-NPNSPLQLKDWLHQQ-----GIKTDSLSKASVAQLLQTTTGTVHQV 278

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--- 724
           +        LSK       ++   + +  +         +  TGR A     +QN+P   
Sbjct: 279 LALRQL---LSKSSIKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNS 335

Query: 725 -------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                                    +   L Q IR AFI         AD+S +E R++A
Sbjct: 336 MPDLEEARELVKQGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIA 395

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL 817
            ++      + F  + DI+   A+++FGV + K  ++ ++R+  K    ++ YG S   L
Sbjct: 396 WLSNEKWRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGAL 455

Query: 818 ----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ------------------ 855
               AT L +   E    ++ + +  P I ++        ++                  
Sbjct: 456 KAMGATNLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGMKFIYR 515

Query: 856 --NGYVETIFGRRIHYDE------------INSPKSSIRNINERAAINA------PIQGS 895
               ++    GR + Y +            I    ++     +R            +Q +
Sbjct: 516 SGCMFLRLRSGRYLCYPQPKIGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIVQAT 575

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE-ITTASQIIVHS 947
           + D+   AM  +  +         +++ IHDE V + P +  + T  +I+   
Sbjct: 576 SRDLLAGAMRRLETA------GNPVVMHIHDEAVIDAPTDRSLDTIVKIMTEV 622


>gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 111/638 (17%), Positives = 221/638 (34%), Gaps = 122/638 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  I T       +      +      DD    +     D       D T    + 
Sbjct: 1   MKQISIDIET----YSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSH 503
            +I+  L    +N + +K   N +++++ L R   + +   G+    + S  L    S  
Sbjct: 57  PQIIEVL----DNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLR 112

Query: 504 DIASIAQKWLSYTRKEILKSRKS--------SIPIDKISDSQVQEHAIENSNVILQLWLL 555
           DI S+    L   R++I   ++                + ++   +   +     + +  
Sbjct: 113 DIGSV----LGLPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYN- 167

Query: 556 LRPKLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQVSAEISKNLL 607
              +  VE  + + ++L+   +         +   +   GI+IDQ L+       +    
Sbjct: 168 ---QRDVEVEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHD 224

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
              +   +L+G   N +SP QL D L  +     G KT +    + AQ L+      + +
Sbjct: 225 QYLQTAKELTGLA-NPNSPLQLKDWLQQQ-----GIKTNSLSKASVAQLLQTTTGTVHQV 278

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--- 724
           +        LSK       ++   + +  +         +  TGR A     +QN+P   
Sbjct: 279 LALRQL---LSKSSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNS 335

Query: 725 -------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                                    +   L Q IR AFI         AD+S +E R++A
Sbjct: 336 MPDLEEARELVKQGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIA 395

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL 817
            ++      + F  + DI+   A+++FGV + K  ++ ++R+  K    ++ YG S   L
Sbjct: 396 WLSNEKWRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGAL 455

Query: 818 ----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ----------NG------ 857
               AT+L +   E    ++ + +  P I ++        ++          +G      
Sbjct: 456 KAMGATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGMKFIYR 515

Query: 858 ----YVETIFGRRIHYDE-----------------INSPKSSIRNINERAA-INAPIQGS 895
               ++    GR + Y +                 IN+ K   R     A  +   +Q +
Sbjct: 516 SGCMFLRLRSGRYLCYPQPKIGINRFGSESITFMGINTVKKWDRIETYGAKLVENIVQAT 575

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           + D+   AM  +  +         +++ IHDE V + P
Sbjct: 576 SRDLLAEAMRRLEAT------GNTVVMHIHDEAVIDAP 607


>gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
 gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
          Length = 644

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 109/602 (18%), Positives = 208/602 (34%), Gaps = 126/602 (20%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--GISMRGFEDI-MLMSYV--- 495
           K+ L + ++  L     N+   K   N  ++ L L +Y        +E   +L  Y    
Sbjct: 49  KDPLPERVVDAL----YNKEITKTAFNAAFEMLCLKKYFPDADYTNWECTSVLALYCSLP 104

Query: 496 --LD----SGRSSHDIASIAQKWLSYT--RKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             LD    + R      +  ++ + +    ++  K+   +  + + +  +  E+ IE + 
Sbjct: 105 ASLDNVSKALRLGEAKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEY-IEYNR 163

Query: 548 VILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
             + +   +R +L+  K   + H Y  LD+        +   G+++D +L+    A   +
Sbjct: 164 QDVVVERAIRKRLLSLKPPAIEHEYWLLDQ-------DINWRGVKVDMELVDAALACNDE 216

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +    E+   L+G + N +S  QL + L  +L +      K         D+  +   D
Sbjct: 217 IVEEATESSKILTGLE-NPNSTMQLKEWLTARLGYDLETMRK--------DDVSNLLAQD 267

Query: 665 NP--IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            P  + K +   + L         ++ N +    +         +  +GR A     LQN
Sbjct: 268 IPSDVRKVLQNRQVLGNSSIKKYLAMKNAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQN 327

Query: 723 IPIK----------------------------TDLGQKIRRAFISPPTKKLISADYSQIE 754
           +P                                + Q IR A ++    + I AD+S IE
Sbjct: 328 LPRNYLEDLDTARDVLKSRDVEMLDLLYGNPGDVIKQLIRTALVAEDGHRFIVADFSAIE 387

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGI 812
            R++A +A       VF    DI+   A+ +F V +EK  V+  +R+  K    ++ YG 
Sbjct: 388 ARVIAWLAHEKWRQDVFAQGGDIYCASASSMFHVPVEKHGVNGHLRQKGKVAELALGYGG 447

Query: 813 S---PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
                  + ++  IP  E    I+ +    P I ++ +   +  +Q   V T    RI  
Sbjct: 448 GVGAMKAMDSKGEIPEKELPGIIEAWRQASPRITKFWKDADSAAKQ--VVRTGEPVRIIQ 505

Query: 870 DEINSPK------------SSIRNINERAAIN---------------------------- 889
             I   K              +     R  +N                            
Sbjct: 506 GNIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEYDGMDQVKNTWGRVETYGGK 565

Query: 890 ---APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--EEITTASQII 944
                +Q  A D    +M+ + K+        K++  IHDE+V E P     +     I+
Sbjct: 566 LVENIVQAVARDCLAASMLRLSKA------GYKIVAHIHDEVVIEAPIGVGSLEEVIDIM 619

Query: 945 VH 946
             
Sbjct: 620 CE 621


>gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 647

 Score =  153 bits (386), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 112/648 (17%), Positives = 214/648 (33%), Gaps = 140/648 (21%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            I S S  + T              +    + DD    +    +D       D  G   +
Sbjct: 3   KINSLSLDLET----YSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEI 58

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDI 505
             EI++ L     ++   K   N  ++++ L ++ +++  + D    S+      S++  
Sbjct: 59  PDEIINAL----MDDSVTKWAFNAMFERVCLSKW-LNLTEYLDP--ASWKCSMVWSAYMG 111

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI--------------LQ 551
             ++ + +      +L   K  +   K     + ++     +                + 
Sbjct: 112 LPLSLEGVG----AVLGLEKQKLTEGK----DLIKYFCTPCSPTKSNGGRVRNLPEHDMD 163

Query: 552 LWLLLR---------PKLIVEKLLHVYERLDKPMIDVVSQ-MEITGIQIDQDLLKQ---V 598
            W   +           LI ++L       +      + Q +   GI ID   +KQ   +
Sbjct: 164 KWERFKVYNIRDVESEMLIQQRLSKFQVPENIWKEYHLDQVINDRGIAIDMTFVKQAVEM 223

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGAKTKTGQWKTTAQDL 657
                + L++L ++I +L     N +S +Q+ D L    L+  S  K             
Sbjct: 224 DEHSREKLIALMQDITNLE----NPNSVQQMKDWLADNGLETDSLGK---------KVVA 270

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +     P+   +   +QL+K       ++ N +    +    F    +  TGR +   
Sbjct: 271 EMLKTAPEPLGTVLELRQQLAKSSVKKYTAMENAVCSDGRARGMFQFYGANRTGRFSGRL 330

Query: 718 PNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISAD 749
             LQN+P                            I   L + IR AFI     K I AD
Sbjct: 331 IQLQNLPQNHMPDLEQARALVRSGNFDALTLLYDSIPEVLSELIRTAFIPREGMKFIVAD 390

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFS 807
           +S IE R++A +A       VF+   DI+   A+++F V +EK  V+  +R+  K    +
Sbjct: 391 FSAIEARVIAWLAGEKWRLNVFQKGGDIYCASASQMFNVPVEKHGVNGHLRQKGKIAELA 450

Query: 808 IIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT-------------- 849
           + YG +   L    A ++ I   E    +  +    P I +                   
Sbjct: 451 LGYGGAVGALKSMGALEMGIEEEELQPLVTAWRQSNPNITKLWWDVDRAVKTCVKQKTPT 510

Query: 850 ----KNFVRQNG--YVETIFGRRIHY------------------DEINSPKSSIRNINER 885
                 F+ Q+G  ++    GRR+ Y                      + K         
Sbjct: 511 ATHGIKFIYQSGMLFIVLPSGRRLAYVKPRMGENMFGSESVTYEGVGGTKKWERIESYGP 570

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
             +   +Q  + DI   AM ++            ++  +HDE++ E  
Sbjct: 571 KFVENIVQAISRDILCHAMQTLKN--------CSIVAHVHDEIIIEAD 610


>gi|255521587|ref|ZP_05388824.1| 5-3 exonuclease family protein [Listeria monocytogenes FSL J1-175]
          Length = 177

 Score =  153 bits (386), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 7/180 (3%)

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169
           GFEADD I T T  A     A T++S DKDL+QL++PT  ++   K     ++ D     
Sbjct: 1   GFEADDCIGTITVQASN-TIATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFF 59

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           ++ GI P + + ++AL GD+ D  PG+ GIG KTA  L+QE+ ++E +L N  ++K   +
Sbjct: 60  EEMGISPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPA-Q 118

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289
           +  I E      LS+KL  + T+VP+ I L  L  +        + ++      L   + 
Sbjct: 119 QTKIQEDLAMLELSQKLARIHTEVPLEIDLPSLKYDGFREDA-FAVVEKYGLKTLTRDIE 177


>gi|302529171|ref|ZP_07281513.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302438066|gb|EFL09882.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 566

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 135/382 (35%), Gaps = 57/382 (14%)

Query: 604 KNLLSLEENI-YDLSGEKFNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           K L+ L   I   L G   N  S   +   L    ++ P+  K               + 
Sbjct: 205 KALVDLAAKISAALGGRPVNPDSSASVVRALAREGIEVPAARKY-------------LLQ 251

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
             D+P +  +LE+++LS++ S    +  +       R    Y +   ++GR A+      
Sbjct: 252 DIDHPAVAPLLEYKELSRLHSANGWAWLDEWVTDG-RFRPHYVVGGVVSGRWATRGGGAL 310

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
            IP        +R    + P  KL+ AD +Q+E R+L  ++    L +V   + D++  +
Sbjct: 311 QIPR------ALRSCASADPGWKLVVADGAQLEPRVLTALSGDRRLAEVAAAT-DLYARL 363

Query: 782 AAEIFGVNI-----EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           A  +F            +   R  AK    S +YG               EA   +    
Sbjct: 364 AEALFSGTRYVPLRPGDTRDDRSRAKIAMLSAMYGG-----------TSGEAGPLLALLR 412

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE---------------INSPKSSIRN 881
            RFP    Y+E+      +   V +  GR                       +       
Sbjct: 413 QRFPDAVSYVERAAAAGERGERVRSRLGRTSPAPSAAWRALTGGLTEDEATETRARRASR 472

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
              R   N  +Q SAAD+T   + ++   L D      ++  +HDE++   P E     +
Sbjct: 473 SWGRFTRNFVVQASAADLTAVLLATLRGRLPD---PAHLVFFLHDEVIVHAPAELADEVA 529

Query: 942 QIIVHSMEKACLPKINLRVPLK 963
           +I+  S+++A         P++
Sbjct: 530 EIVETSIQEAARLVFGEACPVR 551


>gi|315518941|dbj|BAJ51818.1| DNA polymerase-like protein [Ralstonia phage RSB2]
          Length = 701

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 123/713 (17%), Positives = 229/713 (32%), Gaps = 151/713 (21%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F I TD +         +  S +   + T        +    H +     ++     I  
Sbjct: 12  FDIETDGL---------MEYSVIPGAETTVVSKVHCIVIHDYHANWYRRYRSDQPGAIEE 62

Query: 452 YLKKFFENEHFLKIGHN-IKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHD-- 504
            LK   +++  L + HN IKYD  VL      + +  R   D +++S +L +     D  
Sbjct: 63  ALKVLMDSD--LLVAHNGIKYDIPVLELLYPWFKLDKRRVLDTLVLSRLLFADIKDRDNV 120

Query: 505 -----------IASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQL 552
                        S + K   Y   E      +    +    +  + E+  ++  V  ++
Sbjct: 121 LLRKGQLPGKLYGSHSLKAWGYRVGEAKGEYGEGEGNVWAELNDDMVEYCEQDVRVTRKV 180

Query: 553 WLLLRPKL----IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           + L+             L    RL+     V++Q E  G   D+     + AE++    +
Sbjct: 181 FDLMVQNTYYFSDDMTQLQYAVRLEHDAAWVLAQQERNGFPFDERGAAALYAELAGKRQT 240

Query: 609 LEEN----------------------------------------IYDLSGE--------- 619
           + +                                         IY  +G+         
Sbjct: 241 ILDKVMATFGSWYVAKGGVTAFRHPRTGAPLTKYPNVKYPKTGDIYTKAGKLAKIEYVKD 300

Query: 620 ---------KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT----AQDLEQINCGDNP 666
                     FN  S + +  +L  +   P+   T+TG  K      A+  E +      
Sbjct: 301 RPYTPIEHVVFNPGSRQHIAKVLQERGWVPT-EFTETGLPKVDEETLAEAAENLPEQYRD 359

Query: 667 IIKNILEWRQLSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +K I E+  L K     A+         NK    +H   +    +TGR     PNL  +
Sbjct: 360 DVKLIAEYLLLVKRLGQIAEGDNAWLKLCNKG--FIHGSVNPNGAVTGRATHAFPNLAQV 417

Query: 724 PIKTDLGQKIRRAFISPP-------TK---KLISADYSQIELRILAHIAKITPLYQVFEN 773
           P  T L     RA                   +  D S +ELR L H          F++
Sbjct: 418 PSGTALYGPQCRALFGVEHIRKTVVGWAAAVQVGTDASGLELRCLGHF------MARFDD 471

Query: 774 SLDIHRMVAAEIFGVNIE------------------KVSPQMRRHAKTINFSIIYGISPF 815
              I  ++  +I  VN+E                  +   + R +AKT  ++ +YG    
Sbjct: 472 GQYIRDILEGDIHWVNVEALGLVPKGTKRIKEGPGHEEHDKFRGYAKTFIYAFLYGAGDE 531

Query: 816 RLATQL-RIPRSEAADYIKRYFHRFPGIHEYIEKTKNF--VRQNGYVETIF---GRRIHY 869
           ++ + +    ++   D  K++    P I   +  T     V    +V+ +     +R   
Sbjct: 532 KIGSIIPGGNKAVGKDLKKKFMEGTPAIAS-LRATLEELLVESQKWVDGVAQVKWKRRWI 590

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM------LLQ 923
             ++  K  +R+    AA+N+ +Q + A + +  ++   + L +  L          L  
Sbjct: 591 KGLDGRKIKVRS--PHAALNSLLQSAGALLCKYWVVRTEQLLLERGLVHGWHGDFAYLAW 648

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +HDE+       EI            +        R  L    KV +NW++ +
Sbjct: 649 VHDEMQIAARTPEIAAIIAECSQQAMREAGDFFAFRCILDTESKVGDNWKDCH 701


>gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
 gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
          Length = 538

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 168/519 (32%), Gaps = 99/519 (19%)

Query: 520 ILKSRKSSIPI-DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           +      ++P  D  S +Q  ++   +  V L +   L    I E     Y         
Sbjct: 36  LNGGGTRNLPSSDPTSWAQFIDYNQRDVEVELAIHDRLSSFPIPEAEWDAY--------A 87

Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638
           +  ++  TGI +D  L     A   ++  +      +L+G + N +SP QL + L T   
Sbjct: 88  LDQRINDTGILLDHTLADAAVALDDQHRAATLARARELTGLE-NPNSPIQLKEWLTTHG- 145

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
                          A     +      + + +     L+K       ++ N      + 
Sbjct: 146 -------CEMSSLAKADVEAALESATGKVKEVLELRGDLAKSSVKKYQAMHNVTGTDGRA 198

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLG 730
                   +  TGR A     +QN+P                            +   L 
Sbjct: 199 RGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTLTRQRNLDALELLYDSVPDTLS 258

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           Q IR AFI     + I ADYS IE R++A +A  T     F +  D++   A+ +FGV +
Sbjct: 259 QLIRTAFIPSAGCRFIVADYSAIEARVIAWLAGETSTLAAFRDGKDLYCETASRMFGVPV 318

Query: 791 EK--VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHE 844
           EK  ++ ++R+  K    +  Y  S   L    A ++ +   E    +  +    P I  
Sbjct: 319 EKHGINAELRQKGKIATLACGYNGSVGALKAMGALRMGLAEHELKPIVDAWRAANPNIVR 378

Query: 845 YIEKTKNFV------------------RQNG--YVETIFGRRIHY--------------- 869
                +                      ++G  ++    GRR+ Y               
Sbjct: 379 LWADVEQAALDAITTRQAVRLRNLRFTAESGILFITLPSGRRLAYVKPQLGENRWGGTSI 438

Query: 870 ---DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
                    K           +   +Q  A D+   AM  V ++        K+++ +HD
Sbjct: 439 TYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQA------GHKIVMHVHD 492

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           E+V + PE+   T +      M         L  PL  +
Sbjct: 493 EIVIDEPEDSGFTIADA-CQLMTTPPDWAAGL--PLDAD 528


>gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001]
 gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001]
          Length = 1757

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 106/588 (18%), Positives = 194/588 (32%), Gaps = 102/588 (17%)

Query: 451  SYLKKFFENEHFLKIGHN-IKYDKLVLHRY-GISM------RGFEDIMLMSYVLDSGR-- 500
            S L  +  +   L I HN   +D L L R+ G+ +          D M+++  LD  +  
Sbjct: 1181 SSLVPWLASGGRL-IAHNGFGFDYLALARHHGLDLLQAAEEGKLIDTMVLALALDPPKPP 1239

Query: 501  -----------SSHDIASIAQKWLSYTRKEILKSRKS----------------SIPIDKI 533
                         + +   A++     +   LK                    +I    I
Sbjct: 1240 VDGKLSGGQIARLYSLDRCAERAGVPGKTNDLKKLARDAAKAHGHTGKPKQLEAIGYGLI 1299

Query: 534  SDS--QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI-DVVSQMEITGIQI 590
              +      +   +      ++  L P    +  L  Y R +  ++  +V+ + + G ++
Sbjct: 1300 PRNHPDYLAYLQGDVAACRAVYDALVP----DGQLSPYARREMRVMGRLVTGITLHGTRL 1355

Query: 591  DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL--------------FTK 636
            D  L +     I          +    G     SS     + L                 
Sbjct: 1356 DLQLTQSRYDAIEARKEECRSRLVADYGLPTMTSSGAAAANPLSCKGAAEAITKAAADVG 1415

Query: 637  LKFPSGAKTKTGQWKTT-----AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691
            L  P  A  K    K        Q  EQ N     +++ IL       +  T  D     
Sbjct: 1416 LVLPLTATGKPSTSKDALGPLLEQVREQGNQTQTELLETILSLTGARSVYGTALDH---- 1471

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
              +   R+H   +     +GR +   P +     +     +           +L++AD S
Sbjct: 1472 -CQSDGRIHPQVAPLQA-SGRFSLTNPGITVFGKRGGRVTERAIFLPDADDHRLLAADLS 1529

Query: 752  QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811
            QI++R +A  A+     ++F+   D H  +AA +            R  AK I     YG
Sbjct: 1530 QIDMRAMAAHAQDPAYLELFQPGRDAHSEIAAAV---------GLSRSDAKAIGHGWNYG 1580

Query: 812  ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
            +S   +  +  I ++ A  + +     FP +  + ++ +        ++  FGR      
Sbjct: 1581 MSVNGM-VRHGISQALAEQFDQGMRRSFPQLVAWRDQIRERAASGQLLDNGFGR------ 1633

Query: 872  INSPKSSIRNINERAAINAPI---QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
                   +R    RA    P    QG+A D+   A++          L  ++   +HDEL
Sbjct: 1634 ------MMRPNPARAHTQGPALMGQGTARDLMMLALLR-----LPLWLVPQLRFLVHDEL 1682

Query: 929  VFEVPEEEITTASQIIVHSME-KACLPKINLRVPLKVNIKV-SNNWQE 974
            VF VP   +  A + I+ +M      P   L V +   +    ++W E
Sbjct: 1683 VFSVPVARLDEAGEQILQAMTFDWAPPGAALCVGVAGELSQPGSSWAE 1730


>gi|255928521|gb|ACU42136.1| gp59 [Mycobacterium phage UncleHowie]
          Length = 619

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 106/585 (18%), Positives = 208/585 (35%), Gaps = 83/585 (14%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ--DSTGKNTLTKEILSYLKKFFENEH 461
           +  IA+A        D SF +  + +  +   S    S   +    E  + L        
Sbjct: 47  ANTIALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVAEMYALA 106

Query: 462 FLKIGHNIKYDKLVLHRYGISM-----RGFEDIMLMSYVLDSGRSSHD----IASIAQKW 512
              I HN  +D   L   G+       +   D ++++         +     + ++A ++
Sbjct: 107 GPVILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRY 166

Query: 513 LSY----------TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           L             +    K++++      I     ++ A+ ++   L L  ++R + I 
Sbjct: 167 LGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLALEPVMRRRAIE 226

Query: 563 EKLLHVYE--------------RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN--L 606
             L H +E                 + +  ++      GI +D++ L +   +++    +
Sbjct: 227 WTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRYLNQVADEQAI 286

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDN 665
            + +   + L G         +L   L  + + P    +T  G  + T  DLE +    N
Sbjct: 287 YTADLAAHGLDGGT---GKGAKLVQYLAERGELPQPWPRTPKGALRATKADLEALATV-N 342

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P+ K  L    + K    Y   +        +      +L ++ TGR++   P LQ  P 
Sbjct: 343 PLAKAQLSLANIEKTLG-YLSKVSTQAAVTGRCHPQVATLGASATGRMSYGSPELQQFP- 400

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH--RMVAA 783
                 K  R  +      L S D+SQIE   +A++A+       +E   D++   M+AA
Sbjct: 401 ------KDARPILCDDGDGLTSIDWSQIEPVTMANMARDIDFLAAYEAGEDLYGPIMLAA 454

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            I            R  +K +  S +YG    +LA  +       A   ++ F       
Sbjct: 455 GI-----------DRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQIKRQMFAAMKRSA 503

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +++ K +    Q G V T  GR +  D                A+N  +QGSA D+    
Sbjct: 504 KWMVKVEEVAAQFGRVITAGGRILPVD----------EGGIFKAVNYTVQGSAYDVLANT 553

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           ++ +++      +  ++ L +HDE+V   P       +  +   M
Sbjct: 554 IVEMYRR----GMTDELYLAMHDEVVVSTP------VAAEVQEIM 588


>gi|255927583|gb|ACU41205.1| gp59 [Mycobacterium phage Colbert]
          Length = 619

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 106/585 (18%), Positives = 208/585 (35%), Gaps = 83/585 (14%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ--DSTGKNTLTKEILSYLKKFFENEH 461
           +  IA+A        D SF +  + +  +   S    S   +    E  + L        
Sbjct: 47  ANTIALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVAEMYALA 106

Query: 462 FLKIGHNIKYDKLVLHRYGISM-----RGFEDIMLMSYVLDSGRSSHD----IASIAQKW 512
              I HN  +D   L   G+       +   D ++++         +     + ++A ++
Sbjct: 107 GPVILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRY 166

Query: 513 LSY----------TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           L             +    K++++      I     ++ A+ ++   L L  ++R + I 
Sbjct: 167 LGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLALEPVMRRRAIE 226

Query: 563 EKLLHVYE--------------RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN--L 606
             L H +E                 + +  ++      GI +D++ L +   +++    +
Sbjct: 227 WTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRYLNQVADEQAI 286

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDN 665
            + +   + L G         +L   L  + + P    +T  G  + T  DLE +    N
Sbjct: 287 YTADLAAHGLDGGT---GKGAKLVQYLAERGELPQPWPRTPKGALRATKADLEALATV-N 342

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P+ K  L    + K    Y   +        +      +L ++ TGR++   P LQ  P 
Sbjct: 343 PLAKAQLSLANIEKTLG-YLSKVSTQAAVTGRCHPQVATLGASATGRMSYGSPELQQFP- 400

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH--RMVAA 783
                 K  R  +      L S D+SQIE   +A++A+       +E   D++   M+AA
Sbjct: 401 ------KDARPILCDDGDGLTSIDWSQIEPVTMANMARDIDFLAAYEAGEDLYGPIMLAA 454

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            I            R  +K +  S +YG    +LA  +       A   ++ F       
Sbjct: 455 GI-----------DRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQIKRQMFAAMKRSA 503

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +++ K +    Q G V T  GR +  D                A+N  +QGSA D+    
Sbjct: 504 KWMVKVEEVAAQFGRVITAGGRILPVD----------EGGIFKAVNYTVQGSAYDVLANT 553

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           ++ +++      +  ++ L +HDE+V   P       +  +   M
Sbjct: 554 IVEMYRR----GMTDELYLAMHDEVVVSTP------VAAEVQEIM 588


>gi|239942253|ref|ZP_04694190.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239988720|ref|ZP_04709384.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291445710|ref|ZP_06585100.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291348657|gb|EFE75561.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 563

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 141/403 (34%), Gaps = 75/403 (18%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +     V ++M   G+    D+ +++   +           + L  L + +  
Sbjct: 157 MRLLTASESAGTLVAAEMHRAGLPWRADVHRELLNGLLGERYAGGGEPRRLAELADEVSA 216

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +                 +    ++   D+P ++ ++ ++
Sbjct: 217 AFGRRVRPDLPADVVKA-FAQAGIRVK-----------STRRWELEELDHPAVEPLIAYK 264

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I + +    L + + +   R    Y    T++GR  +       IP        IR
Sbjct: 265 KLYRIWTAHGWSWLQDWVREG--RFRPEYQPGGTVSGRWTTNGGGALQIPK------VIR 316

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           +A ++ P  +L+ AD  Q+E R+LA I++   L +V  +  D+++ ++   F  +     
Sbjct: 317 QAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHDGDLYKALSDRAFSGD----- 371

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R HAK      +YG +       L                RFP    Y++       
Sbjct: 372 ---REHAKLALLGAVYGQTSGDGLKNL-----------AALRRRFPLAVAYVDDAARAGE 417

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRN------------------------INERAAINA 890
           +   V T  GR      +++ +                                R   N 
Sbjct: 418 EGRVVRTWLGRTSP-PVVSAGQDEEAGIPQEAPEGAGDAGGPAGSGGGTARARGRFTRNF 476

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
            +QGSAAD     +  + ++L +  L  +++   HDE++   P
Sbjct: 477 VVQGSAADWALLLLAGLRRTLFEQGLRAQLVFFQHDEVIVHCP 519


>gi|255928280|gb|ACU41897.1| gp60 [Mycobacterium phage Puhltonio]
          Length = 619

 Score =  152 bits (383), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 105/585 (17%), Positives = 205/585 (35%), Gaps = 83/585 (14%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ--DSTGKNTLTKEILSYLKKFFENEH 461
           +  IA+A        D SF +  + +  +   S    S   +    E  + L        
Sbjct: 47  ANTIALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVAEMYALA 106

Query: 462 FLKIGHNIKYDKLVLHRYGISM-----RGFEDIMLMSYVLDSGRSSHD----IASIAQKW 512
              I HN  +D   L   G+       +   D ++++         +     + ++A ++
Sbjct: 107 GPVILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRY 166

Query: 513 LSY----------TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           L             +    K++++      I     ++ A+ ++   L L  ++R + I 
Sbjct: 167 LGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLALEPVMRRRAIE 226

Query: 563 EKLLHVYE--------------RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN--L 606
             L H +E                 + +  ++      GI +D++ L +   +++    +
Sbjct: 227 WTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRYLNQVADEQAI 286

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDN 665
            + +   + L G         +L   L    + P    +T  G  + T  DLE +    N
Sbjct: 287 YTADLAAHGLDGGT---GKGAKLVQYLADLGELPQPWPRTPKGALRATKADLEYL-AEIN 342

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P+ K  L    + K                 +      +L ++ TGR++   P LQ  P 
Sbjct: 343 PLAKAQLSLANIEKTLGYLTKV-STQAAVTGRCHPQVATLGASATGRMSYGSPELQQFP- 400

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH--RMVAA 783
                 K  R  +      L S D+SQIE   +A++A+       +E   D++   M+AA
Sbjct: 401 ------KDARPILCDDGDGLTSIDWSQIEPVTMANMARDIDFLAAYEAGEDLYGPIMLAA 454

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            I            R  +K +  S +YG    +LA  +       A   ++ F       
Sbjct: 455 GI-----------DRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQIKRQMFAAMKRSA 503

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +++ K +    Q G V T  GR +  D                A+N  +QGSA D+    
Sbjct: 504 KWMVKVEEVAAQFGRVITAGGRILPVD----------EGGIFKAVNYTVQGSAYDVLANT 553

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           ++ +++      +  ++ L +HDE+V   P       +  +   M
Sbjct: 554 IVEMYRR----GMTDELYLAMHDEVVVSTP------VAAEVQEIM 588


>gi|332983347|ref|YP_004464788.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
 gi|332701025|gb|AEE97966.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
          Length = 657

 Score =  152 bits (383), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 208/617 (33%), Gaps = 134/617 (21%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL----VLHRYGISMRG-------- 485
           D      L  E+L  L     +E  +K  HN +++++     L R GI+++         
Sbjct: 48  DLASGEALPTEVLDALT----DETVVKWAHNAQFERVCLSRWLERQGINLKALNGNSNFL 103

Query: 486 ----FEDIMLMSYVLDSGRSSHDIASI--AQKWLSYTRKEIL-------------KSRKS 526
               +   M+ S  L    S    A +  A+K      KE++               R  
Sbjct: 104 NPASWRCTMVWSAYLGLPLSLEGAALVTGAEKQKLTEGKELIRYFSSPCKPTKSNGGRTR 163

Query: 527 SIPIDKISD-SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           ++P+       + +E+   +    + +   L    + E     Y  LD+       ++  
Sbjct: 164 NLPVHAPDKWEKYKEYNARDVETEMAIMKRLSKFPVPEDEWK-YYILDQ-------EIND 215

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI +D DL+++      ++   L E + D++    N +S  Q+    F +    +    
Sbjct: 216 RGICLDMDLIREAIRCDRRSRTVLTEAVRDITDLD-NPNSVAQMKAW-FAENGLETETLG 273

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           K       A   E +        + +   + L+K       ++ N +    +        
Sbjct: 274 K-------AAVKELLKTAPESFREVLALRQDLAKSSVKKYTAMENAVCSDGRVRGLLQFY 326

Query: 706 ASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAF 737
            +  TGR A     +QN+P                            +   L + IR AF
Sbjct: 327 GANRTGRFAGRLIQVQNLPQNHLPDLVQARQLVKSGDFDALEILYDSVPGVLSELIRTAF 386

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--P 795
           +  P  K I AD+S IE R++A +A      +VF +   I+   A+++F V IE+++   
Sbjct: 387 VPMPGYKFIVADFSAIEARVIAWLAGEQWRNEVFASHGKIYEASASQMFRVPIEEITKGS 446

Query: 796 QMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            +R+  K    ++ YG S   L    A  + +   E    +  +    P I         
Sbjct: 447 PLRQKGKIAELALGYGGSVGALKAMGALDMGLAEDELQPLVTAWRAANPNITRLWWDVDR 506

Query: 852 FVR------------------QNG--YVETIFGRRIHY--DEIN---------------- 873
             +                  ++G  ++    GR++ Y    I                 
Sbjct: 507 AAKTAVREKTAEQTHNILFEYRSGFLFITLPSGRKLAYVKPRIEANRFGSDSITYEGVGA 566

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S K           +   +Q  + DI   AM  +        +   +++ IHDE+V E  
Sbjct: 567 SKKWERIESYGPKFVENIVQAISRDILCYAMQRL------SSMGFSIVMHIHDEVVIET- 619

Query: 934 EEEITTASQIIVHSMEK 950
                 + +I+   M +
Sbjct: 620 --SCDVSPEIVCRIMSE 634


>gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 653

 Score =  152 bits (383), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 116/613 (18%), Positives = 207/613 (33%), Gaps = 135/613 (22%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----G-----ISMRGFED 488
           D T + T+  ++LS L     +   +K   N ++++ VL  Y    G     +   G+  
Sbjct: 45  DLTAEETIPADVLSALT----DNDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSC 100

Query: 489 IMLMSYVLD-SG---RSSHDIA--------SIAQKWLSYTRKE-----ILKSRKSSIPID 531
            M+ +  L   G     S  +         S+  + ++Y  K          R  ++P D
Sbjct: 101 TMVHALTLGLPGSLAEVSKTLKLGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPND 160

Query: 532 KISD-SQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
                +  + + + +     ++   L   P    E+ L   ++          ++   G+
Sbjct: 161 APEKWATFKAYCVRDVEAEREVRRRLSGYPVPETERALWALDQ----------RINDRGV 210

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648
           +ID+ L +   A  S     +      LSG + N +S +QL   ++ +      + TK  
Sbjct: 211 RIDEILAQNAIAFDSAFRAEVTAEASALSGLE-NPNSGEQLKHWIYEQEGARPLSLTK-- 267

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQL-SKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
                    E I    +  +K +L+ + L SK      +++        +         +
Sbjct: 268 -----ETIPELIETAKSETVKTMLQLKMLLSKTSVKKYEAMVQAQCSDGRAHGLLQFYGA 322

Query: 708 TMTGRLASLEPNLQNIPIKTD----------------------------LGQKIRRAFIS 739
             TGR A     +QN+P  T                             L Q IR AFI 
Sbjct: 323 NRTGRWAGRLVQVQNLPRNTMAELDDARALLRCGDTDALEMLFDNPPDVLSQLIRTAFIP 382

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQM 797
               +   AD+S IE R++A +A       VF +  DI+   A+++F V +EK  V+  +
Sbjct: 383 AVGMRFTVADFSAIEARVIAWLAGEKWRMDVFADGGDIYCASASKMFHVPVEKHGVNGHL 442

Query: 798 RRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEK----T 849
           R+  K    ++ YG     L    A +L +  +E  +  + +    P I           
Sbjct: 443 RQKGKVAELALGYGGGVSALKRMGADKLGLTDAELEEIKQSWRKASPRIVRLWSDFESAA 502

Query: 850 KNFVRQNGYVETIFGRR---------IHYDEINS-------------------------- 874
              VR+   V    G +         I      S                          
Sbjct: 503 LEAVRERSTVSLQHGIKLECRSGILFIRLPSGRSLAYVKPRIEYEESFDREGLTYYGRDV 562

Query: 875 -PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
                 R    R   NA IQ  A D    AM  +  +         +++ IHDE+V E P
Sbjct: 563 GGWGKQRTYGGRLVENA-IQAIARDCLAVAMTRLEAA------GYPIVMHIHDEVVVETP 615

Query: 934 E--EEITTASQII 944
              + +    +I+
Sbjct: 616 RSVDCLADVCEIM 628


>gi|332800352|ref|YP_004461851.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1]
 gi|332698087|gb|AEE92544.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1]
          Length = 652

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 87/462 (18%), Positives = 163/462 (35%), Gaps = 96/462 (20%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++   G+++D+ L++        +   L     DL+G + N +SP QL   L        
Sbjct: 199 KINDYGVRVDRQLVENAICCDGIHQKELMAEAIDLTGLE-NPNSPAQLKTWLKGNHNIQV 257

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVH 700
            + +K       A   E +N  ++P +  +LE RQ +SK      +++   +    +   
Sbjct: 258 DSLSK-------ANVEELLNKINHPTVTRVLELRQDMSKTSVRKYEAMDRAMGGDGRIRG 310

Query: 701 TFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQK 732
                 +  TGR A     +QN+P                            +   L Q 
Sbjct: 311 LLQYYGANRTGRWAGRLVQVQNLPRNNMKDLDLARKLLLAGDYESLELLFDSVPDVLSQL 370

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AF+  P  + I +D+S IE R++A +A    +   F+    I+ M A+++FGV +E 
Sbjct: 371 IRTAFVPSPGHRFIISDFSAIEARVIAWLAGEKWVVDTFKGHGKIYEMTASKMFGVPMEL 430

Query: 793 VSP-----QMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIH 843
           +       ++R+  K    +  Y  S   L    A  + +   E    +  +    P I 
Sbjct: 431 IVKGNPEYELRQKGKVAVLACGYQGSVGALKAMGALNMGLKEDELPAIVAAWRESNPNIV 490

Query: 844 EYIEKTKNFV--------------------------------RQNGYVE------TIFGR 865
           +     ++                                  R   YV+      T F +
Sbjct: 491 KLWWDVEDAAIRAVKDRTSITMQYGLKFYYKSGVLFIRLPSGRNLAYVKPRIELDTRFNK 550

Query: 866 -RIHYDEINSPKSSIR-NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
            ++ Y+ I       R +          IQ  A D    +++ + K+        K+   
Sbjct: 551 DKLTYEGIMLGNKWARIDTYGGKLTENIIQAIARDCLAESLLRLDKA------GYKIAFH 604

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +HDE+V +VP+   +   + +   M +       L  PL+  
Sbjct: 605 VHDEVVLDVPQGFGSL--KEVEEIMSQDINWAKGL--PLRAE 642


>gi|38638464|ref|NP_943839.1| gp61 [Mycobacterium phage PG1]
 gi|109391908|ref|YP_655158.1| gp62 [Mycobacterium phage Orion]
 gi|206600352|ref|YP_002241372.1| gp62 [Mycobacterium phage Chah]
 gi|33334079|gb|AAQ12138.1| gp61 [Mycobacterium phage PG1]
 gi|88910450|gb|ABD58378.1| gp62 [Mycobacterium phage Orion]
 gi|206287440|gb|ACI12782.1| gp62 [Mycobacterium phage Chah]
 gi|282721440|gb|ADA83888.1| gp62 [Mycobacterium phage Fang]
 gi|282721543|gb|ADA83990.1| gp61 [Mycobacterium phage Scoot17C]
          Length = 619

 Score =  151 bits (382), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 105/585 (17%), Positives = 205/585 (35%), Gaps = 83/585 (14%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ--DSTGKNTLTKEILSYLKKFFENEH 461
           +  IA+A        D SF +  + +  +   S    S   +    E  + L        
Sbjct: 47  ANTIALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVAEMYALA 106

Query: 462 FLKIGHNIKYDKLVLHRYGISM-----RGFEDIMLMSYVLDSGRSSHD----IASIAQKW 512
              I HN  +D   L   G+       +   D ++++         +     + ++A ++
Sbjct: 107 GPVILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRY 166

Query: 513 LSY----------TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           L             +    K++++      I     ++ A+ ++   L L  ++R + I 
Sbjct: 167 LGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLALEPVMRRRAIE 226

Query: 563 EKLLHVYE--------------RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN--L 606
             L H +E                 + +  ++      GI +D++ L +   +++    +
Sbjct: 227 WTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRYLNQVADEQAI 286

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDN 665
            + +   + L G         +L   L    + P    +T  G  + T  DLE +    N
Sbjct: 287 YTADLAAHGLDGGT---GKGAKLVQYLADLGELPQPWPRTPKGALRATKADLEYL-AEIN 342

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P+ K  L    + K                 +      +L ++ TGR++   P LQ  P 
Sbjct: 343 PLAKAQLSLANIEKTLGYLTKV-STQAAVTGRCHPQVATLGASATGRMSYGSPELQQFP- 400

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH--RMVAA 783
                 K  R  +      L S D+SQIE   +A++A+       +E   D++   M+AA
Sbjct: 401 ------KDARPILCDDGDGLTSIDWSQIEPVTMANMARDIDFLAAYEAGEDLYGPIMLAA 454

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
            I            R  +K +  S +YG    +LA  +       A   ++ F       
Sbjct: 455 GI-----------DRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQIKRQMFAAMKRSA 503

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +++ K +    Q G V T  GR +  D                A+N  +QGSA D+    
Sbjct: 504 KWMVKVEEVAAQFGRVITAGGRILPVD----------EGGIFKAVNYTVQGSAYDVLANT 553

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           ++ +++      +  ++ L +HDE+V   P       +  +   M
Sbjct: 554 IVEMYRR----GMTDELYLAMHDEVVVSTP------VAAEVQEIM 588


>gi|9634019|ref|NP_052093.1| DNA polymerase [Yersinia phage phiYeO3-12]
 gi|6599010|emb|CAB63614.1| DNA polymerase [Yersinia phage phiYeO3-12]
          Length = 704

 Score =  151 bits (382), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 133/378 (35%), Gaps = 35/378 (9%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI---IKNILEWRQL 677
           F  SS   +   L      P    T+ G      + LE +   D      I  I E+  +
Sbjct: 334 FKPSSRDHIQKKLQEAGWVP-EKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMI 392

Query: 678 SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKI 733
            K     A+       ++    + +H   +    +TGR     PNL  +P +++  G++ 
Sbjct: 393 QKRIGQAAEGDKAWLRYVQDDGK-IHGAVNPNGAVTGRATHSFPNLAQVPGVRSPYGEQC 451

Query: 734 RRAFISPPT--------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           R AF +                 D S +ELR LAH          F+N    + ++  +I
Sbjct: 452 RSAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF------MARFDNGEYANEILNGDI 505

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
              N        R +AKT  +  +YG    ++   +   +    +  K++    P I   
Sbjct: 506 HTKNQNAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAAL 565

Query: 846 IEKTKNFVRQN----GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            E  +  +  +    G  + +  +R     ++  K  +R+    AA+N  +Q + A I +
Sbjct: 566 REAIQQSLVNSSAWIGGEQKVQWKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICK 623

Query: 902 RAMISVHKSLEDHKLATKM------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
             +I   + L +  L          +  IHDE+      EE+      +     +     
Sbjct: 624 LWIIKTEEMLIEKGLKHGWDGDFAQMGWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEH 683

Query: 956 INLRVPLKVNIKVSNNWQ 973
            N R  L    K+  NW 
Sbjct: 684 WNFRCRLDTEGKIGPNWA 701


>gi|225460702|ref|XP_002267236.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 366

 Score =  151 bits (382), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 22/258 (8%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL----------PLVRLATQAFGIPAI 110
            AVI       +R ++ P YKA+R K  + L  Q            +VR   +   +P +
Sbjct: 109 IAVIDGERCNEYRQKLLPSYKAHRRKFSKQLPSQRFSSVSAGRSRQVVRDVLRKCNVPVL 168

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIE 166
           +I+G EADD++AT      + G+ V I S DKD  QL+S    +   +    +     ++
Sbjct: 169 KIEGCEADDVVATLVGQVLQRGYRVVIASPDKDFKQLISEEVQIVMPMPEFGRWSFYTLK 228

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS 222
           H I ++   P   + L+ + GD +D +PGI    PG G KTA  LL+++G+LEN+L  A+
Sbjct: 229 HYIAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLNAAA 288

Query: 223 --RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP--RLISFLKA 278
              + ++  +  + +YA+  R + +++ LR DV + +  E L   D       L +F K 
Sbjct: 289 VRTVGRQYAQNALTKYADFLRRNYEILSLRRDVDVQLEEEWLFDRDSRNDSVVLSNFFKL 348

Query: 279 LEFTKLINRVATTYDCDA 296
           L  T+ +    T++  D 
Sbjct: 349 LGETQKLTNQNTSHSSDG 366


>gi|296081158|emb|CBI18184.3| unnamed protein product [Vitis vinifera]
          Length = 380

 Score =  151 bits (382), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 22/258 (8%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL----------PLVRLATQAFGIPAI 110
            AVI       +R ++ P YKA+R K  + L  Q            +VR   +   +P +
Sbjct: 123 IAVIDGERCNEYRQKLLPSYKAHRRKFSKQLPSQRFSSVSAGRSRQVVRDVLRKCNVPVL 182

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIE 166
           +I+G EADD++AT      + G+ V I S DKD  QL+S    +   +    +     ++
Sbjct: 183 KIEGCEADDVVATLVGQVLQRGYRVVIASPDKDFKQLISEEVQIVMPMPEFGRWSFYTLK 242

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS 222
           H I ++   P   + L+ + GD +D +PGI    PG G KTA  LL+++G+LEN+L  A+
Sbjct: 243 HYIAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLNAAA 302

Query: 223 --RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP--RLISFLKA 278
              + ++  +  + +YA+  R + +++ LR DV + +  E L   D       L +F K 
Sbjct: 303 VRTVGRQYAQNALTKYADFLRRNYEILSLRRDVDVQLEEEWLFDRDSRNDSVVLSNFFKL 362

Query: 279 LEFTKLINRVATTYDCDA 296
           L  T+ +    T++  D 
Sbjct: 363 LGETQKLTNQNTSHSSDG 380


>gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 663

 Score =  151 bits (382), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 110/687 (16%), Positives = 219/687 (31%), Gaps = 151/687 (21%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           +  IG+ S  I T              +    +  D+   +    +D       D     
Sbjct: 1   MRKIGTLSIDIET----YSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGE 56

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR----GFEDIMLMSY----- 494
           ++  EIL  L     ++  +K   N  ++++ L    I ++            SY     
Sbjct: 57  SIPDEILQALV----DDSVIKWAFNAAFERVFLS---IWLKRNYPELFC----SYSIPED 105

Query: 495 ----VLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSN 547
                LD       +   A   L  + +    +L   +  +   K     +  +  +   
Sbjct: 106 SVGNYLDPSAWRCSMIWSAYMGLPLSLEGVGAVLGLEEQKLKEGK----DLIRYFCKPCA 161

Query: 548 VIL--------------QLWLLLRP--------KLIVEKLLHVYERLDKPMIDV--VSQM 583
                              W L +         ++ ++K L  Y   +    +     ++
Sbjct: 162 ATKVNGGRTRNLPEHAPDKWELFKAYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEI 221

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
              GI +D D+++      + +  +L   + DL+  + N +S  Q+   L         A
Sbjct: 222 NDRGIALDMDVVENAIRIDAISKATLMATMQDLTDLE-NPNSVAQMKGWL--------AA 272

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           K            +E +      +   +   +QL+K       ++ N +    +    F 
Sbjct: 273 KGVDTDSLDKKAVIELLKTVPTDVADVLTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQ 332

Query: 704 SLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRR 735
              +  +GR A     LQN+P                            +   L + IR 
Sbjct: 333 FYGANRSGRWAGRIIQLQNLPQNHMEDLDVARDIVKSGDYEILNMFYDNVPGVLSELIRT 392

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-- 793
           AFI     K   AD+S IE R++AH+AK     +VF ++ DI+   A+ +FGV +EK   
Sbjct: 393 AFIPREGYKFAVADFSAIEARVIAHLAKERWRMKVFADNGDIYCASASAMFGVPVEKHGQ 452

Query: 794 SPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +  +R+  K    ++ YG S   L    A  + +   E    +  +    P I ++    
Sbjct: 453 NAHLRQKGKIAELALGYGGSVGALTSMGALDMGLAEEELQPLVDAWRAANPNIVQFWWDV 512

Query: 850 ----KNFVRQNGYVETIFGRRIH---------------------------------YDEI 872
               K  +++    +T   R I+                                 Y+ +
Sbjct: 513 DNAVKRAIKERTATKTHGIRFIYKSAMLFIVLPSGRRLAYVKPRIGENKFGGESVTYEGV 572

Query: 873 NSPKSSIR-NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            + K   R        +   +Q  + DI   A+ ++            ++  +HDE++ E
Sbjct: 573 GTNKKWERIESYGPKFVENIVQAISRDILCYALRTLS--------HCFIVGHVHDEVIIE 624

Query: 932 VPEEEITTASQIIVHSMEKACLPKINL 958
             ++    + + I   M +       L
Sbjct: 625 CRQD---ASLEAICEQMGRVPEWIEGL 648


>gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 651

 Score =  151 bits (382), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 117/672 (17%), Positives = 222/672 (33%), Gaps = 124/672 (18%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           K   + + S  I T +     +   ++ +      +     +    +D       D    
Sbjct: 5   KWSVMRTLSIDIETFS----KASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARG 60

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYG--ISMRGFEDIML-MSYVLDS 498
             +  ++L  L    E+   +K   N  ++++ L    G  +   G+   M+  S+    
Sbjct: 61  EQIPGDVLDAL----EDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVP 116

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ---LWLL 555
                D+A +A+    +   E +   K+ I    +     + +     N+       W  
Sbjct: 117 L----DLAGVAKAL--HLETEKMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWET 170

Query: 556 LRP--KLIVEKLLHVYERLDKPMIDV--------VSQMEITGIQIDQDLLKQVSAEISKN 605
            +   K  VE  L + +RL    +            ++   G++ID DL        +  
Sbjct: 171 FKAYCKRDVEVELAITKRLHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTG 230

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
             S  E + +L+    N +S  QL   L ++     G +  +      A  LE    GD 
Sbjct: 231 RASALERMRELT-RVDNPASVTQLLAWLRSQ-----GLQIDSLAKADVAAALEGALEGD- 283

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            + + +   ++++K      + +        +       + +  TGR A     +QN+P 
Sbjct: 284 -VAEVLALRQEMAKSSVKKYERMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPR 342

Query: 726 KT----------------------------DLGQKIRRAFISPPTKKLISADYSQIELRI 757
           ++                             L + IR AF++ P  + + ADYS IE R 
Sbjct: 343 QSISDLEAAADLVRTGHADMLETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEART 402

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +A +A    +  +FE   DI+      +F   +EK SP +R+ AK    +  Y      L
Sbjct: 403 IAWLAGEQWVLDLFEAGGDIYCETGTRMFRQVVEKHSP-LRQRAKVAVLACGYQGGVGAL 461

Query: 818 ----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV---RQNGYVETIFGRRIHYD 870
                 +L +   E AD +  +    P I +             ++G    +   R+ +D
Sbjct: 462 KTMGGEKLGLSEDEMADIVAAWRAANPKIAQLWWDINAAAIAVIKDGGARAVGRIRLAHD 521

Query: 871 E-----------------------------INSPKSSIRNINERAAINA------PIQGS 895
           +                             I      +     R            +Q +
Sbjct: 522 KGALIITLPSGRPLVYPSPRIGENRFGGESITHMGVGVNRKWGRIETYGGKLTENIVQAT 581

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE--ITTASQIIVHSMEKACL 953
           A DI   A+  + +S         +++ IHDE+V EVPE    +     +    M +A  
Sbjct: 582 ARDILAHAIARLERS------GYPVVMHIHDEVVTEVPEGRGSVEELCAL----MSQAPP 631

Query: 954 PKINLRVPLKVN 965
               L  PL   
Sbjct: 632 WADGL--PLAAE 641


>gi|291438121|ref|ZP_06577511.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291341016|gb|EFE67972.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 563

 Score =  151 bits (382), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 157/458 (34%), Gaps = 101/458 (22%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ + V  ++           + L  L + +  
Sbjct: 142 MRLLIAAESAGMLVAAEMNRAGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVSA 201

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +                ++    +I   D+P +K +LE++
Sbjct: 202 AFGRRVRPDLPADVVKA-FAQAGVKV-----------SSTRRWEIESVDHPAVKPLLEYK 249

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I   +    L + +  R  R    +    T++GR  S       IP        IR
Sbjct: 250 KLYRIWVAHGWSWLQDWV--RDGRFRPEFHAGGTVSGRWVSHGGGALQIPK------VIR 301

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++ P  +L+ AD  Q+E R+LA I++   L +V     D+++ V+  +F  +     
Sbjct: 302 RATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRVFSGD----- 356

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG +       L                RFP    Y+++      
Sbjct: 357 ---RDRAKLAVLGAVYGQTSGDGLKNL-----------AALRRRFPRAVAYVDEAARAGE 402

Query: 855 QNGYVETIFGR-------------------------------------------RIHYDE 871
           +   V T  GR                                           R     
Sbjct: 403 EGRLVRTWLGRTCPPAARTTDDAVEEAGIPVAGGSGTSGGSGASGDSGEEAEGGRPWVPG 462

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
             S  +  R    R A N  +QGSAAD     + ++ ++L D   A +++   HDE++  
Sbjct: 463 HASADARARG---RFARNFVVQGSAADWALLLLAALRRALSDR--AAELVFFQHDEVIVH 517

Query: 932 VPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNI 966
            PEEE       I  + + A      +  +R P    +
Sbjct: 518 CPEEEARDVVAAIREAADLAGRLTFGETPVRFPFTTAV 555


>gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 641

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 108/643 (16%), Positives = 215/643 (33%), Gaps = 133/643 (20%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + S S  + T +            +    + +D +  +    +D       D      + 
Sbjct: 1   MKSLSVDLETRS----SVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----G----------ISMRGFEDIMLM 492
           +EIL  L     ++  +K   N  ++++ L RY    G          +S R +   M+ 
Sbjct: 57  QEILDAL----ADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVW 112

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK-----SSIPIDKISDSQ---VQEHAIE 544
           S  +        +A +A + L    +++ + +      S+ P  + +  +    + +   
Sbjct: 113 SAYMG---LPLSLAVVA-RVLGLEEQKMTEGKALIRYFSTPPFHEPTGEKWELFKSYNRR 168

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           +  V + +   L    + + +   Y         +  ++   GI +D   ++      + 
Sbjct: 169 DVEVEMAIQQRLFKYPVPQSVWEEY--------VLDQEINDRGICLDMPFVENAVKIDAH 220

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
               + + +  L+G + N +S  Q+   L  +                  + +  +    
Sbjct: 221 TKEKMTDRLKTLTGLE-NPNSVAQMKAWLKEQ---------GVETESLDKKTVAALLTNV 270

Query: 665 NPIIKNILEW-RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           + ++K +LE  +QL+K       ++ N +    +    F    +  TGR +     LQN+
Sbjct: 271 SALLKEVLELRQQLAKSSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNL 330

Query: 724 P----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           P                            +   L Q IR AFI    +K I AD+S IE 
Sbjct: 331 PQNHLANLEYARSLVRQGNFAALELLYESVSDVLSQLIRTAFIPKEGRKFIVADFSAIEA 390

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSIIYGIS 813
           R+L+ +AK      VF N  DI+   A  +F  N+ K   +  +R+  K    +  YG S
Sbjct: 391 RVLSWLAKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGS 450

Query: 814 PFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR----------QNG-- 857
              L    A +  +   E    +  +    P I ++        +           +G  
Sbjct: 451 VGALKAFGALESGMKEDELKPLVDAWRTANPNIVDFWWAVDRAAKDCIKERSITGTHGIK 510

Query: 858 --------YVETIFGRRIHY--DEIN----------------SPKSSIRNINERAAINAP 891
                   ++E   GRR+ Y    I                 S K +         +   
Sbjct: 511 FIYQSGMMFIELPSGRRLAYVKPRIGENQFGGESITYMGLDLSKKWARIESYGPKLVENI 570

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
            Q  + D+   AM ++            ++  +HDEL+ E  E
Sbjct: 571 TQAISRDLLCYAMQTLRSM--------DIVAHVHDELIIECDE 605


>gi|239929792|ref|ZP_04686745.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 577

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 156/455 (34%), Gaps = 95/455 (20%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +   + V ++M   G+    D+ + V  ++           + L  L + +  
Sbjct: 156 MRLLIAAESAGMLVAAEMNRAGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVSA 215

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +    F +                ++    +I   D+P +K +LE++
Sbjct: 216 AFGRRVRPDLPADVVKA-FAQAGVKV-----------SSTRRWEIESVDHPAVKPLLEYK 263

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I   +    L + +  R  R    +    T++GR  S       IP        IR
Sbjct: 264 KLYRIWVAHGWSWLQDWV--RDGRFRPEFHAGGTVSGRWVSHGGGALQIPK------VIR 315

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++ P  +L+ AD  Q+E R+LA I++   L +V     D+++ V+  +F  +     
Sbjct: 316 RATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRVFSGD----- 370

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG +       L                RFP    Y+++      
Sbjct: 371 ---RDRAKLAVLGAVYGQTSGDGLKNL-----------AALRRRFPRAVAYVDEAARAGE 416

Query: 855 QNGYVETIFGRRIH----------------------------------------YDEINS 874
           +   V T  GR                                              +  
Sbjct: 417 EGRLVRTWLGRTCPPAARTTDDAVEEAGIPVAGGSGTSGGSGASGDSGEEAEGGRPWVPG 476

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
             S+      R A N  +QGSAAD     + ++ ++L D   A +++   HDE++   PE
Sbjct: 477 HASADARARGRFARNFVVQGSAADWALLLLAALRRALSDR--AAELVFFQHDEVIVHCPE 534

Query: 935 EEITTASQIIVHSMEKAC---LPKINLRVPLKVNI 966
           EE       I  + + A      +  +R P    +
Sbjct: 535 EEARDVVAAIREAADLAGRLTFGETPVRFPFTTAV 569


>gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
 gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
          Length = 666

 Score =  151 bits (381), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 111/674 (16%), Positives = 212/674 (31%), Gaps = 125/674 (18%)

Query: 392 FKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
             I T  ++D   +      +    +  D    +    ID       D T    +T++ L
Sbjct: 8   IDIETFSSVDIRTA-----GLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKL 62

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG--FEDIMLMSYVLDSGRSSH---- 503
             +++  E+++++K  HN  ++   L R   I +R   +E  M+        +  +    
Sbjct: 63  VGVRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMV--------KGMYRGYP 114

Query: 504 -DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ---LWLLLRP- 558
             +  + +       K  L++ K+ I          + +     N+       W L R  
Sbjct: 115 ASLEKMGEALDMPEDKAKLRTGKALINYFCKPCKPTKTNGGRTRNLPKHASEKWELFREY 174

Query: 559 -KLIVEKLLHVYERL-DKPMIDVVSQM-----EITGIQIDQDLLKQVSAEISKNLLSLEE 611
            K  VE    + + L D P       M        GI +D+ L++   A   +   +  +
Sbjct: 175 CKRDVEVAREIDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLD 234

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
            I  ++G   N  S  Q+ D L   L     +          A     +        + +
Sbjct: 235 TIKRITGVD-NPRSRAQVLDWLNDTLDEEITS-------LNAASVKALLESDLTDDARAV 286

Query: 672 L-EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP------ 724
           L  W+ L K  +   ++L     K  +         ++ TGR A       N+P      
Sbjct: 287 LTAWQGLGKTSTKKYETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYN 346

Query: 725 ----------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                                 +   L   IR  F+     K +  DYS IE R+LA +A
Sbjct: 347 LNQAGELVKAGHKKDIELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLA 406

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKV-----SPQMRRHAKTINFSIIYGISPFRL 817
               + + F+    I+   AA ++ ++   +     +   R+  K    ++ Y       
Sbjct: 407 GEHWVLEEFKGDGKIYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGY-QGAVGA 465

Query: 818 ATQLRIPRSEAAD-----YIKRYFHRFPGIHEYIEKTKNFVRQN----GYVET------- 861
             Q+     E  D      ++ +    P I E    T+   +       Y  T       
Sbjct: 466 LRQMGASEDEFTDDELRGLVRAWRVANPCIAELWRYTEMMAKSTVSDEFYSGTNPMIPIS 525

Query: 862 ------------------------------IFGRRIHYDEINSPKSSIRNINERAAINAP 891
                                         + G   + D  ++ K+  +    +   N  
Sbjct: 526 FKSTLNAVNGINLAIGLPSGRELYYHNPVIVDGAIYYTDYTHAGKTKEQTYGGKLVEN-I 584

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +Q  A D+   A+  + K+L    +   ++L +HDE+V E          +++       
Sbjct: 585 VQAIARDVLADAINRITKTLVVGGINAHIVLHVHDEVVVEAEAGCAEKVQELLEGVFSTP 644

Query: 952 CLPKINLRVPLKVN 965
                 L  PLK  
Sbjct: 645 PSWAEGL--PLKGE 656


>gi|72391456|ref|XP_846022.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei TREU927]
 gi|62176585|gb|AAX70690.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei]
 gi|70802558|gb|AAZ12463.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
          Length = 1649

 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 126/348 (36%), Gaps = 47/348 (13%)

Query: 668  IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            ++ + +  QL +  + +   LP   N    RVH  +    T TGRL+S  PNLQNIP K 
Sbjct: 1305 LRFMEKQMQLFEEGALFRAVLPECKN----RVHGEFCHVVTATGRLSSQSPNLQNIP-KE 1359

Query: 728  DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            DL   I   F      ++I ADYSQ+E+ +LA +++   + Q   +++D H +  + +  
Sbjct: 1360 DLRCLIVSRFGRRAG-RMIEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLRVSLMTK 1418

Query: 788  VNIEKV-----------SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
               E V             Q+R+ AKT +F   YG     +AT   +  +E    I    
Sbjct: 1419 EPYEDVIHKVKQVKDPHYIQLRQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEE 1478

Query: 837  HRFPGIHEYIEKTKNFVR---------------------QNGYVETIFGRRIHYDEINSP 875
              +  +  Y     + V                      +   + T           +  
Sbjct: 1479 QHYKDLGRYYRLVTDCVEAGADRLLQLRTLDATSWPPTMRRMVLLTEPMHYFVVPTGSKF 1538

Query: 876  KSSIRNINERAAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEV 932
              +          N P+QG A +I +     + +      ++     ++  +HD +  + 
Sbjct: 1539 DFTKDKKAVPRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDA 1598

Query: 933  PEEEITTASQIIVHSME------KACLPKINLRVPLKVNIKVSNNWQE 974
             E         +   M        +  P + L VP K  I +  +  E
Sbjct: 1599 HESVADEVMDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPSLGE 1646


>gi|21929663|gb|AAM81964.1|AF445378_1 DNA polymerase I-like protein C [Trypanosoma brucei]
          Length = 1649

 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 126/348 (36%), Gaps = 47/348 (13%)

Query: 668  IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            ++ + +  QL +  + +   LP   N    RVH  +    T TGRL+S  PNLQNIP K 
Sbjct: 1305 LRFMEKQMQLFEEGALFRAVLPECKN----RVHGEFCHVVTATGRLSSQSPNLQNIP-KE 1359

Query: 728  DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            DL   I   F      ++I ADYSQ+E+ +LA +++   + Q   +++D H +  + +  
Sbjct: 1360 DLRCLIVSRFGRRAG-RMIEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLRVSLMTK 1418

Query: 788  VNIEKV-----------SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
               E V             Q+R+ AKT +F   YG     +AT   +  +E    I    
Sbjct: 1419 EPYEDVIHKVKQLKDPHYIQLRQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEE 1478

Query: 837  HRFPGIHEYIEKTKNFVR---------------------QNGYVETIFGRRIHYDEINSP 875
              +  +  Y     + V                      +   + T           +  
Sbjct: 1479 QHYKDLGRYYRLVTDCVEAGADRLLQLRTLDATSWPPTMRRMVLLTEPMHYFVVPTGSKF 1538

Query: 876  KSSIRNINERAAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEV 932
              +          N P+QG A +I +     + +      ++     ++  +HD +  + 
Sbjct: 1539 DFTKDKKAVPRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDA 1598

Query: 933  PEEEITTASQIIVHSME------KACLPKINLRVPLKVNIKVSNNWQE 974
             E         +   M        +  P + L VP K  I +  +  E
Sbjct: 1599 HESVADEVMDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPSLGE 1646


>gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4]
          Length = 649

 Score =  150 bits (380), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 113/672 (16%), Positives = 223/672 (33%), Gaps = 126/672 (18%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + +    I T          +   +    +  D    +    +D       D      + 
Sbjct: 1   MKTLIIDIET----YSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG--FEDIMLMSYVLDSGRSSH 503
             IL        +   +K  +N  +++  L ++  I M    +    + + +L  G   +
Sbjct: 57  ANILKA----MIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALML--GLPGY 110

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL---QLWLLLRP-- 558
            +  +A+      +K  +K  K+ I    I     + +     N+       W   +   
Sbjct: 111 -LDGVAKCLKLQGQK--MKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYC 167

Query: 559 KLIVEKLLHVYERLDKPMIDVV--------SQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           K  VE    + ++L+   +  +         ++   G+ ID +L+             L 
Sbjct: 168 KQDVEVEREIRKKLEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELI 227

Query: 611 ENIYDLSGEKFNLSSPKQL-GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
           E    L+G + N +SP QL G +L   L+  S AK               ++  +NP +K
Sbjct: 228 EEAVRLTGLE-NPNSPAQLKGWLLKQGLEVDSLAK---------KNVEALMSEVENPEVK 277

Query: 670 NILEWRQ-LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---- 724
            +LE R+ +SK      +++   +    +         ++ TGR A     + N+P    
Sbjct: 278 RLLELRRAMSKTSVKKYEAMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSL 337

Query: 725 ------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760
                                   +   L Q IR AFI     + + AD+S IE R++A 
Sbjct: 338 KDLQVARELLESGKYEALEVLFESVSDVLSQLIRTAFIPSKGHRFVVADFSAIEARVIAW 397

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--PQMRRHAKTINFSIIYGISPFRLA 818
           +A       VF++   I+   AA++F V IE +     +R+  K    ++ YG S   L 
Sbjct: 398 LAGERWRMDVFQSHGKIYEASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALM 457

Query: 819 TQ----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----RQNGYVETIFGRRIHY- 869
                 + +   E  + +  +    P I +     +       ++   V+   G   HY 
Sbjct: 458 QMGALEMGLTEDELPELVSAWREANPKIVKLWWGIEAAAIKAVKEKAVVKMQHGLTFHYT 517

Query: 870 ------------------DEI------------------NSPKSSIRNINERAAINAPIQ 893
                              +I                   S +               IQ
Sbjct: 518 KGILFITLPSGRSLAYVRPKIGIDERFGKEQLTYEGTEQGSKQWGRIPTYGGKLTENIIQ 577

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
             A D    +M+ + ++        ++   +HDE++ +VP    T + + + + M ++  
Sbjct: 578 AIARDCLAVSMLRLDEA------GYRINFHVHDEVILDVP--IATGSMEEVENIMGQSID 629

Query: 954 PKINLRVPLKVN 965
               L  PL  +
Sbjct: 630 WAPGL--PLGAD 639


>gi|289705267|ref|ZP_06501666.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289558017|gb|EFD51309.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 578

 Score =  150 bits (380), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 144/434 (33%), Gaps = 56/434 (12%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV----------SAEISKNLLSLEENIYD 615
           L +    +     V +++   G+  D+ + + +            E    L +L E I D
Sbjct: 165 LRLLAAAESQGALVAAEIRAAGLPWDRGVHEALLTEQLGPRPAQGERPARLQALAERIAD 224

Query: 616 LSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           + G    +  S   L   L T         T+    K               ++  +LE+
Sbjct: 225 VLGSPGLSPDSQPSLLRALQTAGVA--VESTRQWDLKHWIDAGGAQREARAALLAPLLEY 282

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           + L+++ +       +       R H  Y +   +TGR A+       +P        +R
Sbjct: 283 KALARLWTANGWHWLDQWIGDDGRFHAAYLVGGVVTGRWAAHGGGAMQVPA------GVR 336

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA--AEIFGVNIEK 792
            A  + P   L  AD SQ+E RILA +A    L +    + D++R VA      G  +  
Sbjct: 337 DAVRADPGWTLTVADASQVEPRILAAMAADEALARA-GTTPDLYREVAEQGRAAGTALAD 395

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
                R  AK      +YG               ++A  +      +P     +E+  + 
Sbjct: 396 -----RGRAKIALLGAMYGS-----------TTGDSAALMPHLRRLYPRAIGLLERAASV 439

Query: 853 VRQNGYVETIFGRRIHYD--------------EINSPKSSIRNINERAAINAPIQGSAAD 898
               G V T  GR                      S     R    R   N  +QG+AA+
Sbjct: 440 GEGGGQVSTWLGRWSPAPGRKWQESVSDVGTQAAESAARRRRRSQGRFTRNFVVQGTAAE 499

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPK 955
                M  + + L    + T+++  +HDE+V   P  E      ++  S   A       
Sbjct: 500 WALCWMGEIRRRLRSAGMRTELVFFVHDEVVLHGPATEAEAVRTVVAESASAAGRLLFGP 559

Query: 956 INLRVPLKVNIKVS 969
             +  PL V+  V 
Sbjct: 560 APVDFPLTVS-SVG 572


>gi|186488278|ref|NP_001117409.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|51536440|gb|AAU05458.1| At1g34380 [Arabidopsis thaliana]
 gi|52421279|gb|AAU45209.1| At1g34380 [Arabidopsis thaliana]
 gi|332193586|gb|AEE31707.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 347

 Score =  150 bits (380), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP--LVRLATQAFGIPAIEIQGFEAD 118
            AVI        R E+ P YKA+R         + P   V    +   +P + I+G EAD
Sbjct: 113 IAVIDGEEGNQRRRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPVVRIEGHEAD 172

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGI 174
           D++AT    A + G+   I S DKD  QL+S    +        +     ++H   ++  
Sbjct: 173 DVVATLMEQAVQRGYRAVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNC 232

Query: 175 PPEKMVCLQALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENILINAS--RIKQKK 228
            P+  +  + + GD +D +PG    +P  G KTA  L++++G+LE++L  A+   + +  
Sbjct: 233 DPQSDLSFRCIMGDEVDGVPGIQHMVPAFGRKTAMKLVRKHGSLESLLSAAAVRTVGRPY 292

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALE 280
            +E + +YA+  R + +++ L  DV + I  E L+  D   +   L SF   L 
Sbjct: 293 AQEALTKYADYLRRNYQVLALNRDVRVQIQNEWLMERDTSNDSEVLSSFFSTLH 346


>gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 644

 Score =  150 bits (380), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 105/653 (16%), Positives = 220/653 (33%), Gaps = 123/653 (18%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  I T       +      +       D    +    ID       D T   ++ 
Sbjct: 1   MKQISIDIET----YSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSH 503
            +++  L    ++   +K   N +++++ L R   + +   G+    + S  L    S  
Sbjct: 57  PQVIKAL----DDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLR 112

Query: 504 DIASIAQKWLSYTRKEILKSRKS--------SIPIDKISDSQVQEHAIENSNVILQLWLL 555
           D+ S+    L   R++I   ++                + ++   +   +     + +  
Sbjct: 113 DVGSV----LGLPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYN- 167

Query: 556 LRPKLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQVSAEISKNLL 607
              +  VE  + + ++L+   +         +   +   GI+IDQ L+       +    
Sbjct: 168 ---QRDVEVEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHD 224

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
              +   +L+G   N +SP QL D L  +       KT +    + AQ L+      + +
Sbjct: 225 QYLQTAKELTGLA-NPNSPLQLKDWLQQQ-----DIKTNSLSKASVAQLLQTTTGTVHQV 278

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--- 724
           +        LSK       ++   + +  +         +  TGR A     +QN+P   
Sbjct: 279 LALRQL---LSKSSIKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNS 335

Query: 725 -------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                                    +   L Q IR AFI         AD+S +E R++A
Sbjct: 336 MPDLEEARELVKQGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIA 395

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL 817
            ++      + F  + DI+   A+++FGV + K  ++ ++R+  K    ++ YG S   L
Sbjct: 396 WLSNEKWRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGAL 455

Query: 818 ----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ------------------ 855
               AT L +   E    ++ + +  P I ++        ++                  
Sbjct: 456 KAMGATNLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGMKFIYR 515

Query: 856 --NGYVETIFGRRIHYDE------------INSPKSSIRNINERAAINA------PIQGS 895
               ++    GR + Y +            I    ++     +R            +Q +
Sbjct: 516 SGCMFLRLRSGRYLCYPQPKIGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIVQAT 575

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE-ITTASQIIVHS 947
           + D+   AM  +  +         +++ IHDE V + P    + T  Q++   
Sbjct: 576 SRDLLAEAMRRLEAT------ENTVVMHIHDEAVIDAPSNRSLDTMVQLMTEV 622


>gi|261329543|emb|CBH12525.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei
            gambiense DAL972]
          Length = 1649

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 126/348 (36%), Gaps = 47/348 (13%)

Query: 668  IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            ++ + +  QL +  + +   LP   N    RVH  +    T TGRL+S  PNLQNIP K 
Sbjct: 1305 LRFMEKQMQLFEEGALFRAVLPECKN----RVHGEFCHVVTATGRLSSQSPNLQNIP-KE 1359

Query: 728  DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            DL   I   F      ++I ADYSQ+E+ +LA +++   + Q   +++D H +  + +  
Sbjct: 1360 DLRCLIVSRFGRRAG-RMIEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLRVSLMTK 1418

Query: 788  VNIEKV-----------SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
               E V             Q+R+ AKT +F   YG     +AT   +  +E    I    
Sbjct: 1419 EPYEDVIHKVKQLKDPHYIQLRQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEE 1478

Query: 837  HRFPGIHEYIEKTKNFVR---------------------QNGYVETIFGRRIHYDEINSP 875
              +  +  Y     + V                      +   + T           +  
Sbjct: 1479 QHYKDLGRYYRLVTDCVEAGADRLLQLRTLDATSWPPTMRRMVLLTEPMHYFVVPTGSKF 1538

Query: 876  KSSIRNINERAAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEV 932
              +          N P+QG A +I +     + +      ++     ++  +HD +  + 
Sbjct: 1539 DFTKDKKAVPRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDA 1598

Query: 933  PEEEITTASQIIVHSME------KACLPKINLRVPLKVNIKVSNNWQE 974
             E         +   M        +  P + L VP K  I +  +  E
Sbjct: 1599 HESVADEVVDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPSLGE 1646


>gi|84495963|ref|ZP_00994817.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84382731|gb|EAP98612.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 565

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/517 (16%), Positives = 178/517 (34%), Gaps = 72/517 (13%)

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           +GI +      M          S  D+            +E+++              + 
Sbjct: 99  HGIPVA----TM-------PTPSGGDLFDFTGS-DGIGPEELVRGDGHLRADAASGWLET 146

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHV-YERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
            E  +  +   L+  +  R +        V     +     +  ++E  G+ +D+ ++++
Sbjct: 147 DERLLRWAEAALECAVRQRDRAESLGARIVGTIHSESAAALMCLELEEGGLPVDRAVMER 206

Query: 598 VSAEIS------------KNLLSLEENIYDLSGEKF-NLSSPKQLGDILFTKLKFPSGAK 644
           +  E +                   E +  + G +  +L +P Q+ D+L   +       
Sbjct: 207 LIGEFAGPRAASEEAAAVARRERDAEVLRHVPGRESTDLRNPLQVRDML-AGVGVDVP-- 263

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
                   T + +       +P++  +L WR+  +I +TY     +       R+   ++
Sbjct: 264 -------NTRKWVLDAYRHVHPVVDALLAWRKAERIATTYGYRWLDQCVGPDDRLRGGWT 316

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
                 GR+ + E  L N+P        +R    + P    + AD  QIE R+LA ++  
Sbjct: 317 ACDGAAGRMTA-ENGLHNLPA------ALRSGVAAHPGHVFVRADLGQIEPRVLAVVSGD 369

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
               +      D++  VA+ + GV+        R  AK    + +YG             
Sbjct: 370 PAFAEATRAD-DLYAPVASRL-GVD--------RPVAKIAVLAAMYGQRSGA-------- 411

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS-----PKSSI 879
              A + +K     +P     +++  +   +   + T  GR I      +        ++
Sbjct: 412 ---AGEALKGLERAYPVAMGLLDRAYDTGVRGEPLRTFGGRLIPTGRFLAQSPVGTNPAL 468

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
                R A NA IQG+AA++ +    +V        +  +++L +HDEL+   PE     
Sbjct: 469 DAARGRFARNAIIQGAAAELFKAWAATVRAL--GTPMGAQIVLCLHDELLVHAPESRAAE 526

Query: 940 ASQIIVHSMEKACLPKINLR-VPLKVNIKVSNNWQEE 975
            + ++  S+  A         V    +  +   W + 
Sbjct: 527 VAALVDQSLADASRRWAAGAPVRFVADTSIIARWSDA 563


>gi|322504483|emb|CAM37559.2| putative mitochondrial DNA polymerase I protein C [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1628

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 121/338 (35%), Gaps = 44/338 (13%)

Query: 679  KIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            K++      L   +      RVH       T TGRL+S  PNLQNIP + DL + I   F
Sbjct: 1290 KLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRF 1349

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP-- 795
             +     +I ADYSQ+E+ +LA + +   + Q   +++D H +  + +     E V    
Sbjct: 1350 GAQ--GMMIEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKA 1407

Query: 796  ---------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY- 845
                     Q+R+ AK  +F   YG     ++T   +   E    I    H +  + +Y 
Sbjct: 1408 KVKKDPQYIQLRQQAKVFSFQRQYGAGISTISTTTGLTEQEVDRLIVAEEHHYKELSKYY 1467

Query: 846  --IEKTKNFVRQN----------------GYVETIFGRRIHY--DEINSPKSSIRNINER 885
              + +                          V  +     ++     +    +    +  
Sbjct: 1468 SLVTRCVEAGADRLLRLRTLDTSCWNTNIRRVVMLTEPMYYFVVPTGSKFDFTRDRKSVP 1527

Query: 886  AAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
               N P+QG A +I +    ++ +      ++     ++  +HD +  +  +        
Sbjct: 1528 RLKNYPVQGLAGEIVQIMCGAIVREFYQKRNYGEKAFLVNTVHDCVWVDAHKSVADEVRA 1587

Query: 943  IIVHSMEK------ACLPKINLRVPLKVNIKVSNNWQE 974
             +   M           P + L VP KV I   ++  E
Sbjct: 1588 DLARIMGHTQETIATLWPDMKLDVPFKVEIHSGSSLGE 1625


>gi|154334253|ref|XP_001563378.1| mitochondrial DNA polymerase I protein C [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1628

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 121/338 (35%), Gaps = 44/338 (13%)

Query: 679  KIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            K++      L   +      RVH       T TGRL+S  PNLQNIP + DL + I   F
Sbjct: 1290 KLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRF 1349

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP-- 795
             +     +I ADYSQ+E+ +LA + +   + Q   +++D H +  + +     E V    
Sbjct: 1350 GAQ--GMMIEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKA 1407

Query: 796  ---------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY- 845
                     Q+R+ AK  +F   YG     ++T   +   E    I    H +  + +Y 
Sbjct: 1408 KVKKDPQYIQLRQQAKVFSFQRQYGAGISTISTTTGLTEQEVDRLIVAEEHHYKELSKYY 1467

Query: 846  --IEKTKNFVRQN----------------GYVETIFGRRIHY--DEINSPKSSIRNINER 885
              + +                          V  +     ++     +    +    +  
Sbjct: 1468 SLVTRCVEAGADRLLRLRTLDTSCWNTNIRRVVMLTEPMYYFVVPTGSKFDFTRDRKSVP 1527

Query: 886  AAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
               N P+QG A +I +    ++ +      ++     ++  +HD +  +  +        
Sbjct: 1528 RLKNYPVQGLAGEIVQIMCGAIVREFYQKRNYGEKAFLVNTVHDCVWVDAHKSVADEVRA 1587

Query: 943  IIVHSMEK------ACLPKINLRVPLKVNIKVSNNWQE 974
             +   M           P + L VP KV I   ++  E
Sbjct: 1588 DLARIMGHTQETIATLWPDMKLDVPFKVEIHSGSSLGE 1625


>gi|296123324|ref|YP_003631102.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
 gi|296015664|gb|ADG68903.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
          Length = 686

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 141/323 (43%), Gaps = 34/323 (10%)

Query: 660 INCGDNPIIKNILEWRQL--SKIKSTYADSLPNH------INKRTQRVHTFYSLASTMTG 711
           ++   NPI++ I +   L   +   +  + LP              R+ T  S   + TG
Sbjct: 378 LDAAMNPILRKIEQHGLLLDERWNPSSTNDLPELKRMRLSAAPTGGRLRTRLSQNRSRTG 437

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R+ + + + Q+IP++      +R A +    + LISADY   E R+ A +++ + L   F
Sbjct: 438 RITASQYSCQSIPLR------LRPAVVVGEGRTLISADYRAFEWRVAAALSQDSQLLTDF 491

Query: 772 EN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
            +   D++  + ++ F      VS   R   K  +   +Y       A+  +   +EA  
Sbjct: 492 GSPDFDLYAFLVSQ-FDDLKHDVSSA-RPIIKGDSIQALYDFIDDGTASDGKTSVAEA-- 547

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            I+R F   P +  + +        +G+V T  GR      I+  +       +R A+N 
Sbjct: 548 -IQRLF---PRLMTWRQSVAAEALSSGFVTTPLGR-----VIDLTEGQDDLNRQRQAVNN 598

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            IQ  AA++ ++A+I++ + L       ++LL +HD ++ +    ++   ++ I  +M  
Sbjct: 599 LIQAHAAELFKQALIAMDQRL---PPGARILLPMHDGVLVDCLTHQLDAVARGIRAAMTG 655

Query: 951 ACLPKINLRVPLKVNIKVSNNWQ 973
              P   + VPL+V I+   NW 
Sbjct: 656 FSNP---MPVPLQVVIETGQNWG 675


>gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725]
 gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725]
          Length = 657

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 124/679 (18%), Positives = 230/679 (33%), Gaps = 142/679 (20%)

Query: 387 IGSASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
           +   S  I T  ++D   +     A+S     DD    +    ID       D      L
Sbjct: 1   MKHLSIDIETYSSVDIKKAGMYKYALS-----DDFQILLFAYSIDFGEVKIIDLAKGEIL 55

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI--SMRGFEDIMLMSYVLDSGRSSH 503
            + I+  L     +++ +K  +N  ++   L++ G   S+  + D M            H
Sbjct: 56  PEVIIEAL----NDKNIIKHAYNAPFEWWCLNQAGYKTSIEQWRDTM-----------FH 100

Query: 504 DI-----ASIAQKWLSYTRKEILKS---RKSSIPIDKISDSQVQEHAIENSNVILQ---L 552
            +     A +     +    +  K     K+ I +  +     +++     N+       
Sbjct: 101 GLYCGYTAGLGATGAAIGLPQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEK 160

Query: 553 WLLLRPKLIVE--KLLHVYERL-------DKPMIDVV-SQMEITGIQIDQDLLKQVSAEI 602
           W L +   I +      +Y+RL       ++  + V+  ++   G++ID +L+K   +  
Sbjct: 161 WELFKNYCIQDVVTETEIYKRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSIN 220

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
                 L E    ++G   N +S  QLG  L  K         K           E I  
Sbjct: 221 DIVTAELTEEAIQVTGLD-NPNSAAQLGKWLKEKTGQDIENLQKG-------TVSELIGS 272

Query: 663 GDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            ++     +LE RQ L+K       ++   I    +         +  TGR A     +Q
Sbjct: 273 LEDKEAVRVLEIRQELAKTSIKKYVAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQ 332

Query: 722 NIP----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQI 753
           N+P                            +   L Q IR AF+     K + AD+S I
Sbjct: 333 NLPRNYLETLDYAREIVKSQDADFLKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAI 392

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV---SPQ--MRRHAKTINFSI 808
           E R++A +A      +VF     I+   A+++FGV IE +   +P+  +R+  K    ++
Sbjct: 393 EARVIAWLAGEQWRQEVFATHGKIYEASASQMFGVPIELIKKGNPEYALRQKGKVAELAL 452

Query: 809 IYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY---IEKTKNFVRQNGYVET 861
            YG S   L    A  + +   E  D ++R+ +    I +    IE     + + G  + 
Sbjct: 453 GYGGSSGALIAMGALDMGLEEKELPDVVRRWRNANKRITDLWYGIENAVIKLMETGETQG 512

Query: 862 -----------------------IFGRRIHYDEINSP-KSSIRNINERAAIN-------- 889
                                    GR+++Y + +        N      +N        
Sbjct: 513 LKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPHLKENRFGSNALHYFGVNQTTKKWEV 572

Query: 890 ----------APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE-EIT 938
                       +Q  + D     +    K LE   L T  ++ IHDE V +     ++ 
Sbjct: 573 QETYGGKLVENIVQAISRDCLAVTL----KRLETEGLQT--VMHIHDEAVIDADPNVDLN 626

Query: 939 TASQIIVHSMEKACLPKIN 957
              +++   +E A    + 
Sbjct: 627 KVCELMGQPIEWAPGLLLK 645


>gi|157866599|ref|XP_001687691.1| mitochondrial DNA polymerase I protein C [Leishmania major strain
            Friedlin]
 gi|68125305|emb|CAJ03123.1| putative mitochondrial DNA polymerase I protein C [Leishmania major
            strain Friedlin]
          Length = 1548

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 120/338 (35%), Gaps = 44/338 (13%)

Query: 679  KIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            K++      L   +      RVH       T TGRL+S  PNLQNIP + DL + I   F
Sbjct: 1210 KLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRF 1269

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP-- 795
             +     +I ADYSQ+E+ +LA + +   + Q   +++D H +  + +     E V    
Sbjct: 1270 SAQ--GMMIEADYSQLEVVVLAALCRDPRMMQELRDNIDFHCLRVSLMTKEPYEDVVRKA 1327

Query: 796  ---------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY- 845
                     Q+R+ AK  +F   YG     ++T   +   E    I    H +  + +Y 
Sbjct: 1328 KVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEHHYKELSKYY 1387

Query: 846  --IEKTKNFVRQN----------------GYVETIFGRRIHY--DEINSPKSSIRNINER 885
              + +                          V  +     ++     +    +    +  
Sbjct: 1388 SLVTRCVEAGADRLLRLRTLDTSLWNANIRRVVMLTEPMYYFVVPTGSKFDFTRDRKSVP 1447

Query: 886  AAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
               N P+QG A +I +    ++ +      ++     ++  +HD +  +  +        
Sbjct: 1448 RLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAFLVNTVHDCVWVDAHKCVADEVCA 1507

Query: 943  IIVHSMEK------ACLPKINLRVPLKVNIKVSNNWQE 974
             +   M        A  P + L VP K  I    +  E
Sbjct: 1508 DLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPSLGE 1545


>gi|71416914|ref|XP_810416.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70874942|gb|EAN88565.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1627

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 127/343 (37%), Gaps = 46/343 (13%)

Query: 673  EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
            +  QL +  + +   LP   +    RVH       T TGRL+S  PNLQNIP + DL + 
Sbjct: 1287 KKMQLFEEGALFRAVLPECKD----RVHGELCHTVTATGRLSSQSPNLQNIPREEDLRRL 1342

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
            I   F      ++I ADYSQ+E+ +LA +++ T + Q   + +D H +  + +     E 
Sbjct: 1343 IVSRFGRREG-RMIEADYSQLEVVVLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN 1401

Query: 793  VSP-----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            V             Q+R+ AKT +F   YG     +AT   +   E    I      +  
Sbjct: 1402 VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLISAEEQHYKD 1461

Query: 842  IHEY----IEKTKNFVRQNGYVETIF-------GRRIHY----------DEINSPKSSIR 880
            +  Y    ++  +    +   + T+         RR+               +    +  
Sbjct: 1462 LSRYYRLVMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEPLHYFVVPTGSKFDFAKD 1521

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHK---LATKMLLQIHDELVFEVPEEEI 937
              +     N P+QG A +I +     + +   + +       ++  +HD +  +      
Sbjct: 1522 KKSIPRLKNYPVQGLAGEIVQIMCGKIVRRFYEKRNYDGRAFLVNTVHDCVWIDAHSSVA 1581

Query: 938  TTASQIIVHSM------EKACLPKINLRVPLKVNIKVSNNWQE 974
                  +   M        +  P + L VP   ++ +  +  E
Sbjct: 1582 DEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNADVHIGPSLGE 1624


>gi|311898817|dbj|BAJ31225.1| putative DNA polymerase [Kitasatospora setae KM-6054]
          Length = 562

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 132/387 (34%), Gaps = 65/387 (16%)

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEI-----------SKNLLSLEENIYDLSG-EK 620
           +     +  +M   G+    D+   +  E+              L  L   +    G   
Sbjct: 171 ESAGALLACEMAHDGLPWRADVHDALLTELLGPRPAIPGTQPAKLAELALEVQRALGARP 230

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNL S  Q+      +              + ++    ++   D+P    ++ +++LS++
Sbjct: 231 FNLDSHTQVIKAFADR------------GVQLSSTRSWELKAVDHPAAALLVRYKELSRL 278

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            + +  +       R  R    Y +   +TGR AS       IP        +RRA ++ 
Sbjct: 279 HAAHGWAWQ-AAWARGGRFRPEYVVGGVVTGRWASRGGGALQIPR------TLRRAVVAD 331

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           P   L+ AD +Q+E R+LA ++    L +      D++  +AA  F  +        R  
Sbjct: 332 PGWLLVVADAAQLEPRVLAALSGDAGLART-AAGGDLYAALAASAFHGD--------REQ 382

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK      +YG +   +   L                R+P    Y+E         G V 
Sbjct: 383 AKLGLLGAMYGQTGGGIGPLLN-----------TLRRRYPDAMGYVEAAARTGEDGGVVA 431

Query: 861 TIFGRRIHYDEIN---------SPKSSIRNINERAAI--NAPIQGSAADITRRAMISVHK 909
           +  GR       +         S ++  R+   R     N  IQGS AD     + ++ +
Sbjct: 432 SRLGRVCPPPSADWLDLTEAPESGEAGGRSARARGRFTRNFVIQGSGADWALALLAALRR 491

Query: 910 S---LEDHKLATKMLLQIHDELVFEVP 933
               L        ++   HDE+V   P
Sbjct: 492 RLAVLHSGGDRPHLVFFQHDEVVVHTP 518


>gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes
           L99]
          Length = 644

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 103/619 (16%), Positives = 213/619 (34%), Gaps = 102/619 (16%)

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           A +  + +D         + D  V     +  +  +   +L  L     N   LK  HN 
Sbjct: 23  AYAYTESEDFEILLFAYAYDDEPVKVIDLTIDE--IPDTVLEDL----NNRRVLKTAHNA 76

Query: 470 KYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSHDIAS---IAQKWLSYTRKEI--- 520
            +++  L +Y    +    ++  M+   +L    S   ++    +AQ+  +  +  I   
Sbjct: 77  NFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLAQEKDNEGKALIRYF 136

Query: 521 ---LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
               K  K++    +       E   +      Q  ++ R  +  +     +   ++   
Sbjct: 137 CMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERS-IAKKIAKFPFPEDEQRNW 195

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
           ++  ++   G++ID DL+K   A   +   SL +    L+G + N +S +QL D L   +
Sbjct: 196 ELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTGLE-NPNSVQQLKDWLAD-M 253

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
            +P  +  K    +  A +       D  + + +L  +++SK      + + +      +
Sbjct: 254 GYPVSSLNKDSVSELLADEDL-----DEDVREMLLLRQEMSKTSIKKYEKMQHARCHDGR 308

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP----------------------------IKTDL 729
                    +  TGR A     +QN+P                            +   L
Sbjct: 309 VRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAFEMMYSNVPDVL 368

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
            Q IR AFI+         D+S IE R++A +A       VF +   I+   A+++F + 
Sbjct: 369 SQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIP 428

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           IE+V   +R+  K    ++ Y      L    A ++ +  +E    +  +    P I   
Sbjct: 429 IEEVDKNLRQKGKVSELALGYNGGVNALIAMGALEMGLKENELQGIVDAWRKASPAITSL 488

Query: 846 IEKTKNFVR------------------------------------QNGYVETIFGRRIHY 869
               +   +                                    +   V   +G +I Y
Sbjct: 489 WRGVEKHAKLAISTRKSQKYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQICY 548

Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
           + +       +       +   +Q  A D    ++    + +ED  + T  ++ +HDE +
Sbjct: 549 EGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISL----RRIEDTGIDT--VMHVHDEAI 602

Query: 930 FEVPEEE--ITTASQIIVH 946
            EV E E  +   + I+  
Sbjct: 603 TEVQESESSVDKLNAILAE 621


>gi|167945573|ref|ZP_02532647.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 161

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 5/133 (3%)

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-- 515
           +    K+G N+KYD  VL RYGI +RG   D ML SYVLDS  S HD+ S+A+K+L Y  
Sbjct: 1   DPEQKKVGQNLKYDMSVLARYGIELRGIAFDTMLESYVLDSTASRHDMDSLAKKYLHYDT 60

Query: 516 -TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLD 573
              +++    K  +  D+I       +A E++++ L+L   L P+L  E  L  +   L+
Sbjct: 61  IHFEDVAGKGKKQLTFDQIPLESAAPYAAEDADITLRLHQTLWPRLQAEPTLASLTTDLE 120

Query: 574 KPMIDVVSQMEIT 586
            P++ V+S++E  
Sbjct: 121 VPLVPVLSRIERN 133


>gi|256395061|ref|YP_003116625.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
 gi|256361287|gb|ACU74784.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
          Length = 568

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 145/413 (35%), Gaps = 75/413 (18%)

Query: 585 ITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYDLSGEK-FNLSSPKQLGDIL 633
             G+    D+  Q+  E+           + ++++   + +  G +  N  S  Q+    
Sbjct: 188 HHGLPWRADVHSQILEEVLGPRPLDGSPPREMVAMAARLAEALGIRALNPDSAAQVTKAF 247

Query: 634 FT-KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
               +K PS  +              ++   D+P I  +L++++LS++ S       +  
Sbjct: 248 SDAGVKLPSLRR-------------WELEGIDHPAIPLLLKYKELSRLYSFNGWVWRDTW 294

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
                R    YS+   +TGR A+       I  +      +R+A I+ P    +SAD +Q
Sbjct: 295 VVDG-RFRPEYSVGGVVTGRWAARGGGALQIARR------LRKAVIADPGWLFVSADAAQ 347

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +E RILA +A+   + +  ++  D++  +A          V    R  AK      +YG 
Sbjct: 348 LEPRILAAMAQDPGMAEATQSD-DMYSALAG---------VFEGSRDQAKLGLLGAMYGQ 397

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD-- 870
           +    A  L + R            RFP     ++       +   V +  GR       
Sbjct: 398 TGGGAAAPLALMR-----------RRFPKATALLDDAAREGERGRLVRSQLGRTCPPPSQ 446

Query: 871 ----------------EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
                           + N     +     R   N  IQ +AA+     +  + + L   
Sbjct: 447 RWQSAIAGDAEADAADDSNRRSGQVARARGRFTRNFVIQATAAEWAEVLLALLRQQLRTL 506

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI---NLRVPLKV 964
               +++   HDE++   P E     +++I+     A         +R P+ V
Sbjct: 507 D-GPQLVFFQHDEVLVHAPREHAAAVTEMIIQCATAAGRLVFGPSPVRFPMSV 558


>gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes]
 gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 651

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 112/619 (18%), Positives = 210/619 (33%), Gaps = 125/619 (20%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL----VLH 477
           F V      ++V+       K  L ++IL  L     ++  +K   N  ++++     L 
Sbjct: 37  FAVSVDNGPVTVYD----FNKEKLPQDILEALV----DDRVIKWAFNASFERICLSNWLK 88

Query: 478 RYG--------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
           ++         +S   +   M+ S  L    S   + ++ +      R+     R   +P
Sbjct: 89  KHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSLEGVGTVLKLKDKKMREGADLIRYFCVP 148

Query: 530 IDKISDS----QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
                 +    +   H   +       +     +  VE  L + ERL    +      E 
Sbjct: 149 CKPTKVNGGRIRNFPHHAPDKWSAFIDYN----RRDVEVELAIKERLKNFPVPDFVWDEY 204

Query: 586 T--------GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
                    G+ ID D +K       ++   ++E +  L+G + N +S  Q+   L    
Sbjct: 205 HQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEELKALTGLE-NPNSVLQMIGWLREHG 263

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
                    T            +   D    + +   +Q +K   +   ++ N + K  +
Sbjct: 264 --------VTTDSLDKKAVKGLLKTVDETTAQVLKLRQQAAKSSVSKYQAMMNCVCKDGR 315

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP---------------------------IKTDLG 730
               F    +  TGR A     LQN+P                            +  L 
Sbjct: 316 ARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARELFGTGDLEATELIYDTQDTLS 375

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           Q IR AF+    KK I  D+S IE R+L+H+A      +VFE   DI+ M A+++FGV +
Sbjct: 376 QLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVFEQGKDIYCMSASQMFGVPV 435

Query: 791 EKV--SPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHE 844
           EK   + ++R+  K    +  YG S   L    A  + +   E    +  +    P I  
Sbjct: 436 EKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLTEEELQPLVNSWRLANPNIVL 495

Query: 845 YIEKTKNFVR------------------QNG--YVETIFGRRIHY--DEI---------- 872
           Y     N V+                  + G  ++    GR++ Y    I          
Sbjct: 496 YWWDVDNAVKTAVKELIPTSTHGIQFEVKRGILFITLPSGRKLAYIKPRIGDNQFGGESV 555

Query: 873 ------NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
                  + +           +   +Q  + DI   +M  +           K++  +HD
Sbjct: 556 TYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLKN--------FKIVGHVHD 607

Query: 927 ELVFEVP-EEEITTASQII 944
           E++ E P E+++   + ++
Sbjct: 608 EVIIECPIEQKLDEVASLM 626


>gi|321399199|emb|CBZ08517.1| putative mitochondrial DNA polymerase I protein C [Leishmania
            infantum JPCM5]
          Length = 1548

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 124/338 (36%), Gaps = 44/338 (13%)

Query: 679  KIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            K++      L   +      RVH       T TGRL+S  PNLQNIP + DL + I   F
Sbjct: 1210 KLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRF 1269

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP-- 795
             +     +I ADYSQ+E+ +LA + +   + Q   +++D H +  + +     E V    
Sbjct: 1270 GAQ--GMMIEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKA 1327

Query: 796  ---------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY- 845
                     Q+R+ AK  +F   YG     ++T   +   E    I    H +  + +Y 
Sbjct: 1328 KVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEHHYKELCKYY 1387

Query: 846  --IEKTKNFVRQN----GYVETIFG----RR-------IHY---DEINSPKSSIRNINER 885
              + +              ++T       RR       I+Y      +    +    +  
Sbjct: 1388 SLVTRCVEAGADRLLRLRTLDTSLWNANIRRAVMLTEPIYYFVVPTGSKFDFTRDRKSVP 1447

Query: 886  AAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
               N P+QG A +I +    ++ +      ++     ++  +HD +  +  +        
Sbjct: 1448 RLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAFLVNTVHDCVWVDAHKCVADEVRA 1507

Query: 943  IIVHSMEK------ACLPKINLRVPLKVNIKVSNNWQE 974
             +   M        A  P + L VP K  I    +  E
Sbjct: 1508 DLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPSLGE 1545


>gi|238060029|ref|ZP_04604738.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237881840|gb|EEP70668.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 554

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 147/427 (34%), Gaps = 75/427 (17%)

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYDLSG-EKF 621
           +     + ++M   G+    ++  ++  E+           + L  L   I +  G  + 
Sbjct: 163 ESAGALIAAEMGAAGLPWRAEVHDEILTELLGEPSPVGGPPRRLAELAARIAEAFGVRQV 222

Query: 622 NLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +  SP +L        ++ P+                  +   D+P +  +LE ++L +I
Sbjct: 223 HADSPAELLRAFARAGVELPNTR-------------AWVLRGVDHPAVPLVLEHKELYRI 269

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            + +  +  +    R  R H  Y     ++GR A+       IP        IRRA ++ 
Sbjct: 270 WTAHGWAWRDAWV-RGGRFHPEYVPGGVVSGRWATRGGGALQIPK------VIRRAVVAD 322

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           P  +L+ AD  Q+E R+LA ++    L         ++  +A + FG +        R  
Sbjct: 323 PGWRLVVADAGQLEPRVLAAVSGDARLAAAGGAGD-LYAALARDSFGGD--------RPR 373

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK      +YG +       L +               +P    Y+E         G V 
Sbjct: 374 AKVALLGAMYGQTGGMAVPALTV-----------LRRNYPTAFAYVEAAARTGEAGGLVR 422

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAI------------------NAPIQGSAADITRR 902
           +  GR                I+  AA+                  N  IQ +AA+    
Sbjct: 423 SWLGRTCPPGAAGFADGDDAGIDPEAAVDPQGPRARAARSRGRFTRNFVIQATAAEWAST 482

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLR 959
            + ++  +L       +++   HDE++   P  +    ++ I  S  +A         +R
Sbjct: 483 LLATLRTAL--AGSDAELVFFQHDEVIVHCPAGQADEVAEAIRASGARATALLFGDTPVR 540

Query: 960 VPLKVNI 966
            PL V++
Sbjct: 541 FPLDVSV 547


>gi|71414776|ref|XP_809478.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70873866|gb|EAN87627.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1499

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 127/343 (37%), Gaps = 46/343 (13%)

Query: 673  EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
            +  QL +  + +   LP   +    RVH       T TGRL+S  PNLQNIP + DL + 
Sbjct: 1159 KKMQLFEEGALFRAVLPECKD----RVHGELCHTVTATGRLSSQSPNLQNIPREEDLRRL 1214

Query: 733  IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
            I   F      ++I ADYSQ+E+ +LA +++ T + Q   + +D H +  + +     E 
Sbjct: 1215 IVSRFGRREG-RMIEADYSQLEVVVLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN 1273

Query: 793  VSP-----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841
            V             Q+R+ AKT +F   YG     +AT   +   E    I      +  
Sbjct: 1274 VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLISAEEQHYKD 1333

Query: 842  IHEY----IEKTKNFVRQNGYVETIF-------GRRIHY----------DEINSPKSSIR 880
            +  Y    ++  +    +   + T+         RR+               +    +  
Sbjct: 1334 LSRYYRLVMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEPLHYFVVPTGSKFDFAKD 1393

Query: 881  NINERAAINAPIQGSAADITRRAMISVHKSLEDHK---LATKMLLQIHDELVFEVPEEEI 937
              +     N P+QG A +I +     + +   + +       ++  +HD +  +      
Sbjct: 1394 KKSIPRLKNYPVQGLAGEIVQIMCGKIVRRFYEKRNYDGRAFLVNTVHDCVWIDAHSSVA 1453

Query: 938  TTASQIIVHSM------EKACLPKINLRVPLKVNIKVSNNWQE 974
                  +   M        +  P + L VP   ++ +  +  E
Sbjct: 1454 DEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNADVHIGPSLGE 1496


>gi|270620199|ref|ZP_06221866.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270317757|gb|EFA29140.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 150

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 73/121 (60%)

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
           GIP + ++G EADD+I T    A   G  V I + DKD+ QLV     L +T+    +D 
Sbjct: 1   GIPLLVVEGIEADDVIGTLALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDR 60

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           E VI+K+GIPPE ++   AL GDS DNIPG+ G+G KTA  LLQ  G++  I  N  ++ 
Sbjct: 61  EGVIEKYGIPPELIIDYLALMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVA 120

Query: 226 Q 226
           +
Sbjct: 121 E 121


>gi|167565000|ref|ZP_02357916.1| DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 619

 Score =  149 bits (376), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 102/587 (17%), Positives = 201/587 (34%), Gaps = 113/587 (19%)

Query: 466 GHN-IKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEI 520
            HN I +D+  L +   Y +      D ++M  + +  R   H + S   +         
Sbjct: 70  AHNGINFDRKALAKVTGYEMPYTAILDTLVMGRLAEPERLGGHKLESYGIEM-------- 121

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
               K S         +++ +  ++  V       L  KL   +       L+  +  ++
Sbjct: 122 -GILKGSHNEWDRYSEEMRSYCEQDIAVT----NALYKKLERVQTWGESCDLEHTVAYLI 176

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEEN-------IYDLSG--------------- 618
                 G  ++      ++A++ +               IY  +G               
Sbjct: 177 DLQMTNGFPLNMREAMTLAAQLWERRDGYLAEMQRVFPPIYVSAGAVTPKRTMKREGREY 236

Query: 619 -----------EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
                      ++FN  S   + + L  K  + +   T+ G    T   L+++   D P 
Sbjct: 237 TAGAPYTKIVLQEFNPGSEYHVANRLKRKYGWRAPL-TEKGNPNITEAVLKKL---DFPE 292

Query: 668 IKNILEWRQLSKIKSTYADS---------LPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           ++ +L + ++ K  +  A             +H ++   RVH + +    +TGR+    P
Sbjct: 293 VQPLLHFARVDKQWTQLASPPKKNGTGGGWIHHADE-NHRVHGYVNSNGAVTGRMTHSRP 351

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           N  NI        ++R  +I     K +  D   +ELR+LAH        ++    LD  
Sbjct: 352 NSANIDK------EMRHIWIPSMGMKQVGCDAEGLELRVLAHYLARYDGGRLTRQLLDGD 405

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT------------------- 819
           + +  +   VN +      R  AKT+ +  +YG    +                      
Sbjct: 406 KALGTDAHSVNRDNTDLFSRDGAKTLLYGSLYGAGDEKAGNIWIADWRTSGKPVSEWPVW 465

Query: 820 -----QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
                +L+  ++       +      G  + I+  +   +  G+++ I GRRI       
Sbjct: 466 CHVRGKLKTAKAIGRVVKAKLLDGIVGFRKLIKDIETAAKSRGWLKGIDGRRI------- 518

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED-----HKLATKMLLQIHDELV 929
                R  +  AA+N  +QG+ A I ++A+   H  + +     H +    L  +HDE+ 
Sbjct: 519 -----RVRHAHAALNTLLQGTGAIIMKKALAIYHAEITEIHGLVHGVHFGYLANVHDEVQ 573

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
            E   +          +++ KA     N R  L     + NNW E +
Sbjct: 574 QECLPQYAELIGTTFKNAITKAG-EHWNFRCRLDGAFDIGNNWHETH 619


>gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 646

 Score =  149 bits (376), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 115/669 (17%), Positives = 218/669 (32%), Gaps = 130/669 (19%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + +  I T      +S    I+           F++  I    SV   +         +E
Sbjct: 4   TLAIDIET------YSDVDLISCGVYKYSSSPHFEILLIAY--SVDDEETVCIDVANGEE 55

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDI-----MLMSYV-LDSG 499
                 +   ++   K   N  +++     Y         +        ML   + L+  
Sbjct: 56  PPKEFIEMLFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGV 115

Query: 500 RSSHDIA--------SIAQKWLSYTRK-EILKSRKSSIPIDKISD-SQVQEHAIENSNVI 549
            +   +          + + + S  +  +    R  ++P D        + + I + +V 
Sbjct: 116 GAVLGLDKQKMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVE 175

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
            Q+   L    I ++   +Y         +  ++   GI +D++L+    A       + 
Sbjct: 176 KQIRQRLAKFPIPKREQEIYC--------LDQRINDRGIMVDRNLVNHAVACDLLYKETA 227

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
               Y+L+G + N +S  QL      KL             K T +DL     GD  + +
Sbjct: 228 TARAYELTGLE-NPNSVSQL------KLWLKEKGLEVDSLAKDTVKDLSMKAEGD--VQE 278

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP----- 724
            +      SK      +++   +    +         +  TGR A     + N+P     
Sbjct: 279 VLKLRLATSKTSVKKYEAIDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLP 338

Query: 725 -----------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
                                      L + IR AF++ P  + I +DYS IE R+LA +
Sbjct: 339 DLELARALVSEGRYEEVELFYESTPNVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWL 398

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ--MRRHAKTINFSIIYGISPFRL-- 817
           A      QVFE    I+   A+ +F V IE+++    +R+  K    ++ YG +   L  
Sbjct: 399 AGEEWRLQVFETHGKIYEASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTS 458

Query: 818 --ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------------RQNG 857
             A ++ +   E    +  +    P I  +                           ++G
Sbjct: 459 MGALKMGLTEEELPGLVSTWRSANPHITAFWWAVDEAAVTAVRDKKPSKVGRVSFEYKSG 518

Query: 858 --YVETIFGRRIHY------------------DEINSPKSSIRNINERAAINAPIQGSAA 897
             +V    GR++ Y                      S K           +   +Q ++ 
Sbjct: 519 ILFVTLPSGRKLSYVKPRMMLNKFGREGLTYEGIGESKKWMRLETYGPKLVENIVQAASR 578

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE--ITTASQIIVHSMEKACLPK 955
           DI   AM+     LE       ++  +HDE+V EVP+ +  +   ++I+      A  P 
Sbjct: 579 DILAEAMLR----LEKEGFD--IVCHVHDEVVLEVPDGKSSVEEVNEIM------AVNPV 626

Query: 956 INLRVPLKV 964
               +PLK 
Sbjct: 627 WTEGLPLKA 635


>gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
          Length = 648

 Score =  149 bits (376), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 106/682 (15%), Positives = 216/682 (31%), Gaps = 147/682 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T +        +   +    +  D    +     D       D      L 
Sbjct: 1   MKTLSIDIETFS----SVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLD-SGRSS 502
            E+L  L     +   +K  +N  +++  + ++    +    +    + +  L   G   
Sbjct: 57  HEVLVALT----SSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPG--- 109

Query: 503 HDIASIAQ----------------KWLSYTRKEILKSRKSSIPIDKISD---SQVQEHAI 543
            ++  +A+                ++ S   K    + +    + + +     + + +  
Sbjct: 110 -NLDGVAKALKLSEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCG 168

Query: 544 ENSNVILQLWL---LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           ++  V   +        P    ++L  + + +              G++ID DL+K   A
Sbjct: 169 QDVEVERSIKNRISKFEPLKAEQELWALDQDI-----------NDRGVRIDADLVKHAIA 217

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              +    L     +L+G   N +S  QL   L  K      +  K        +  E I
Sbjct: 218 CDEQYQAGLMVEAKELTGLP-NPNSTAQLKKWLEDK-GLSVSSLAK-------DKIEELI 268

Query: 661 NCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
              D+  +  +L  RQ ++K       ++   +   ++         ++ TGR A     
Sbjct: 269 EKTDDASVHRVLRLRQEMAKTSVKKYLAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQ 328

Query: 720 LQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADYS 751
           +QN+P                            +   L Q +R AFI     +   +D+S
Sbjct: 329 VQNLPQNKIADLDTARTLLKGGHYEAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFS 388

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--PQMRRHAKTINFSII 809
            IE R++A +A       VF     I+   AA++F V +E ++    +R+  K    ++ 
Sbjct: 389 AIEARVIAWLAGEGWRLDVFNTHGKIYEASAAQMFKVPVESITKGSPLRQKGKVAELALG 448

Query: 810 YGISPFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-----------R 854
           Y      L       + +   E    +K +      I ++    +               
Sbjct: 449 YQGGKGALIQMGALTMGLDEDELPGLVKAWRTANKKIVQFWYDVEAAAVKAVKERKPVKI 508

Query: 855 QNG----------YVETIFGRRIHY-------------------DEINSPKSSIRNINER 885
           Q+G          +V+   GRR+ Y                    ++ S K    N    
Sbjct: 509 QHGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEALTYEGKLESGKWGRLNTYGG 568

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP--EEEITTASQI 943
             +   +Q  A D     +I +  +        K ++ +HDE V +VP  + E+     I
Sbjct: 569 KLVENIVQAVARDCLAVTLIRLDDA------GYKTVMHVHDETVLDVPRGKNELDKVESI 622

Query: 944 IVHSMEKACLPKINLRVPLKVN 965
               M +       L  PL  +
Sbjct: 623 ----MGEPIPWAKGL--PLTAD 638


>gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 646

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 110/643 (17%), Positives = 222/643 (34%), Gaps = 128/643 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + +    I T       +      +    +  D    +    ID       D     T+ 
Sbjct: 1   MKNLEIDIET----YSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVL-----HRYG--ISMRGFEDIMLMS-YV--- 495
           KE+   L    E++   K   N +++++ L     ++ G  +    ++  M+ S Y+   
Sbjct: 57  KEVYDAL----EDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLP 112

Query: 496 -----------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD-SQVQEHAI 543
                      L+  + +     I          ++   R  ++P        + + + I
Sbjct: 113 LSLEGVGVVLGLEKQKLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNI 172

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            +    +Q+   L+   + + +   Y         +  ++   GI++D D +++     +
Sbjct: 173 RDVEAEMQIQSRLQKFPVPDFVWDEYH--------LDQEINDRGIKVDMDFVEKCLEIDN 224

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            +  SL   +  L+    N +S  Q+   L       +G +T+T   K  A  ++++   
Sbjct: 225 VSRESLMTKMQVLTSLT-NPNSVVQMKGWLSD-----NGIETETLGKKAVAALIDEVPDE 278

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            + I+      ++L+K       ++ N + +  +    F    +  TGR A     LQN+
Sbjct: 279 MSEILAL---RQKLAKSSVRKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNL 335

Query: 724 P----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           P                            I   L Q IR AFI    +  I AD+S IE 
Sbjct: 336 PQNHMEDLAEARGLVRSGDYDSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEA 395

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           R++A  A  +    VF    DI+   A+++FGV +EK  V+  +R+  K    ++ YG S
Sbjct: 396 RVIAWFAGESWRADVFAKGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGS 455

Query: 814 PFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET-------I 862
              L    A ++ +   E  + +  +    P I  +     + V++    +T        
Sbjct: 456 TGALKAMGALEMGLAEEELPELVSAWRCSNPNIVRFWWDVDSAVKKAIKSKTSTATHGVH 515

Query: 863 FGRR------------------------------IHYDEINSPKSSIR-NINERAAINAP 891
           F  R                              + Y+ + S K   R        +   
Sbjct: 516 FSCRSGMLFITLPSGRVLSYVKPCMGENKFGGESVTYEGVGSTKKWERLESYGPKFVENI 575

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
           +Q ++ DI   AM ++            ++  +HDE++ E   
Sbjct: 576 VQATSRDILMYAMKTLR--------CCSIVAHVHDEIIIEADP 610


>gi|213163760|ref|ZP_03349470.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 103

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 5/103 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A G
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMG 103


>gi|322497680|emb|CBZ32756.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1548

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 124/338 (36%), Gaps = 44/338 (13%)

Query: 679  KIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            K++      L   +      RVH       T TGRL+S  PNLQNIP + DL + I   F
Sbjct: 1210 KLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRF 1269

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP-- 795
             +     +I ADYSQ+E+ +LA + +   + Q   +++D H +  + +     E V    
Sbjct: 1270 GAQ--GMMIEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVVRKA 1327

Query: 796  ---------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY- 845
                     Q+R+ AK  +F   YG     ++T   +   E    I    H +  + +Y 
Sbjct: 1328 KVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEHHYKELCKYY 1387

Query: 846  --IEKTKNFVRQN----GYVETIFG----RR-------IHY---DEINSPKSSIRNINER 885
              + +              ++T       RR       I+Y      +    +    +  
Sbjct: 1388 SLVTRCVEAGADRLLRLRTLDTSLWNANIRRAVMLTEPIYYFVVPTGSKFDFTRDRKSVP 1447

Query: 886  AAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
               N P+QG A +I +    ++ +      ++     ++  +HD +  +  +        
Sbjct: 1448 RLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAFLVNTVHDCVWVDAHKCVADEVHA 1507

Query: 943  IIVHSMEK------ACLPKINLRVPLKVNIKVSNNWQE 974
             +   M        A  P + L VP K  I    +  E
Sbjct: 1508 DLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPSLGE 1545


>gi|322489694|emb|CBZ24954.1| mitochondrial DNA polymerase I protein C,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1538

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 120/338 (35%), Gaps = 44/338 (13%)

Query: 679  KIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            K++      L   +      RVH       T TGRL+S  PNLQNIP + DL + I   F
Sbjct: 1200 KLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPKEEDLRRLIVSRF 1259

Query: 738  ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV---- 793
             +     +I ADYSQ+E+ +LA + +   + Q   +++D H +  + +     E V    
Sbjct: 1260 GAQ--GMMIEADYSQLEVVVLAALCRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVMRKA 1317

Query: 794  -------SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY- 845
                     Q+R+ AK  +F   YG     ++T   +   E    I    H +  + +Y 
Sbjct: 1318 KVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEHHYKELSKYY 1377

Query: 846  --IEKTKNFVRQN----------------GYVETIFGRRIHY--DEINSPKSSIRNINER 885
              + +                          V  +     ++     +    +    +  
Sbjct: 1378 SLVTRCVEAGADRLLRLRTLDTSLWNANIRRVVMLTEPMYYFVVPTGSKFDFTRDRKSVP 1437

Query: 886  AAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
               N P+QG A +I +    ++ +      ++     ++  +HD +  +  +        
Sbjct: 1438 RLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAFLVNTVHDCVWVDAHKCVADEVRA 1497

Query: 943  IIVHSMEK------ACLPKINLRVPLKVNIKVSNNWQE 974
             +   M        A  P + L VP K  I    +  E
Sbjct: 1498 DLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPSLGE 1535


>gi|118483131|gb|ABK93472.1| unknown [Populus trichocarpa]
          Length = 375

 Score =  148 bits (374), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 19/242 (7%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKI------PEML-LPQLPLVRLATQAFGIPAIEIQ 113
            AV+        R ++ P YKA+R K       P+     +  +V        +P ++I+
Sbjct: 121 IAVLDGDGGSEHRRQLLPSYKAHRRKFSRKSSAPQKYPAERSHVVMDVLTKCNVPVVKIE 180

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVI 169
           G EADD++AT      + G  V I S DKD  QL+S    +   +    +     ++H I
Sbjct: 181 GHEADDVVATLAGQVLQNGHKVVIASPDKDFKQLISEDVQIVLPIAELNRWSFYTLKHYI 240

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--R 223
            ++   P   +  + + GD +D +PGI    PG G KTA  LL+++G+L+N+L  A+   
Sbjct: 241 SQYNCDPCSDLSFRCIMGDEVDGVPGIQNVAPGFGRKTALKLLKKHGSLQNLLDAAAVRT 300

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR--LISFLKALEF 281
           + +K  ++ + ++++  R + +++ LR DV + +  E L+  D       L +F K LE 
Sbjct: 301 VGKKYAQDALTKHSDYLRRNYEILALRRDVDVQLKEEWLVERDRCNDSIILSNFFKLLEQ 360

Query: 282 TK 283
           +K
Sbjct: 361 SK 362


>gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 560

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 165/478 (34%), Gaps = 102/478 (21%)

Query: 551 QLWLLLRP--KLIVEKLLHVYERLDKPMIDVVSQMEI--------TGIQIDQDLLKQVSA 600
           + W L +   K  VE  + + E+L    +      E          GI+ID   ++    
Sbjct: 76  EKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQTINDRGIEIDSLFVESAIK 135

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQ 659
              +    L   +  ++G + N +S  Q+   L    L+  S  K          +  ++
Sbjct: 136 LDQEVKTHLMSELKHVTGLE-NPNSVLQMRSWLKEHGLEMESLGK---------KEVAKE 185

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +      + + +   +QL+K       ++ N      +    F    +  TGR A     
Sbjct: 186 LKTVGKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQ 245

Query: 720 LQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADYS 751
           LQN+P                            I   L Q IR AFI     K I AD+S
Sbjct: 246 LQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGFKFIVADFS 305

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSII 809
            IE R+LA +A      +VF    DI+   A+++F V +EK  V+  +R+  K    ++ 
Sbjct: 306 AIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALG 365

Query: 810 YGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEK----TKNFVRQNGYVET 861
           YG S   L    A  + +   E    +  +    P +           K  V ++  V T
Sbjct: 366 YGGSVGALKAMGALDMGLTEEELQPLVDAWRKSNPMVTTLWWDVDRAVKQCVHEHISVRT 425

Query: 862 I----------------FGRRIH-----------------YDEINSPKSSIR-NINERAA 887
                              R ++                 Y+ + S K   R        
Sbjct: 426 HNIVFTYKSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKF 485

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE-EITTASQII 944
           +    Q  A DI   AM    ++L+++    +++  +HDE + E  +   + +  +++
Sbjct: 486 VENITQAIARDILLYAM----QTLKEY----RIVAHVHDEAIIETDKNVSVQSVCELM 535


>gi|157168417|ref|YP_001456774.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
 gi|74268849|emb|CAJ29727.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
          Length = 634

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 99/600 (16%), Positives = 209/600 (34%), Gaps = 92/600 (15%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
           +  + +  I    +         I +S        +  V     D           + + 
Sbjct: 59  SKSTVAVDIEAAGLAHASFDMRCITLSWYTGTGSEAMTVLIDPRD---------PHEASF 109

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI----SMRGFEDIMLMSYVLDSGR- 500
            + IL+             + HN  YD   L ++G+     +    D ++++ +    + 
Sbjct: 110 ARRILTT--------APALVFHNGAYDVPPLVQHGVMTLDHIVKVWDTIVLARMAYPDKD 161

Query: 501 SSHDIASIAQKWLSYTRKE---------ILKSRKSSIPIDKISDSQVQEH--AIENSNVI 549
           +S  + S+A +  +              +L   K S          +     A+ ++ + 
Sbjct: 162 TSKGLESLAGRSDTLGMPPSPGSIKNSYLLAGYKKSDGFMHADIDMLPYRIGAMSDTPIT 221

Query: 550 LQLWLLLR-----------------PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           L++   L                  P+   +   H     ++     + +    G+++D+
Sbjct: 222 LRMLDKLYNNCVQWLTSSTFEGETVPRTAQD--AHRLIEREQITNRAMLRRSAIGLRVDR 279

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWK 651
           + L   S +          N+ + +  +  + +   + + L T+   P S  +T TG+ K
Sbjct: 280 EYLHTYSEQTLAE-REHAANLIEKTIAREAVGNGLHVVNYLDTQGLIPASWPRTPTGRLK 338

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY-SLASTMT 710
              Q  E +   D+P+I    +      I      +  + + + T RVH     L ++ T
Sbjct: 339 ADKQAFESL---DHPLIDAHRKVADTDHILDYLGKT--DAMAQITGRVHPQVGILGASAT 393

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
           GR+A  +P LQ  P +     +    +  P     +S D+S +E  I+A+ A+ T     
Sbjct: 394 GRMAYSQPELQQFPSEA----RKIILWDKPEGA--VSIDWSSVEPVIMANCARDTEFLAG 447

Query: 771 FEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
           F +   D++  + ++             R+ AK +  + +YG     LA +L +   EA 
Sbjct: 448 FNHHGADLYAPITSQ----------GIERKTAKVVMLAAMYGQGSRSLAERLGVSVDEAK 497

Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
              K+ F   P    +++  +    Q+G + T  GR +                    +N
Sbjct: 498 SLRKKVFEPMPRTDAFMKAIQATSEQHGRIMTADGRMLTIPT-----DPTGAPMAYRGVN 552

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
              QGSA  +    +   +       ++  + L +HDELV +       + +  I   M+
Sbjct: 553 YFCQGSAYSVMSEVINRAY----GEGISDGIYLAMHDELVVDA------SIADRIRELMQ 602


>gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
 gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
          Length = 663

 Score =  148 bits (373), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 165/482 (34%), Gaps = 104/482 (21%)

Query: 550 LQLWLLLRP--KLIVEKLLHVYERLDKPMIDVVSQMEIT--------GIQIDQDLLKQVS 599
           +  W + +   K  VE  + + ++L    +      E          GI +D D++    
Sbjct: 178 MIKWEMFKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAI 237

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLE 658
           A   K+   L + + +++G + N +S +Q+   L    L+  S  K          +   
Sbjct: 238 AFDEKSKAVLADKMQEMTGLE-NPNSVQQMKQWLSCNGLEMDSLGK---------KEVAA 287

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +N    P+   +   +QL+K       ++ N +    +    F    +  +GR A    
Sbjct: 288 VLNTAPEPLKTVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLI 347

Query: 719 NLQNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADY 750
            LQN+P                            +   L Q IR AF+     + I +D+
Sbjct: 348 QLQNLPQNHMSDLEEARSLVKQGNYEAMNMLYDDVPDTLSQLIRTAFVPRKGMEFIVSDF 407

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSI 808
           S IE R+L+H+A       VF +  DI+   A+++F V +EK  V+  +R+  K    ++
Sbjct: 408 SAIEARVLSHLAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELAL 467

Query: 809 IYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ--------- 855
            YG S   L    A  + +   E    +  +    P I +        V++         
Sbjct: 468 GYGGSVGALKSMGALDMGLEEDELKPLVDMWREANPNIVKLWWDVDRAVKKAVKQREPSS 527

Query: 856 ------------------NGYVETIFGRRIHYDEINSPKSSIRNI-----NERAAINAP- 891
                             +G   +    ++  ++  S   +   +      ER     P 
Sbjct: 528 IGSITFSYKSGMLFIGLPSGRCLSYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPK 587

Query: 892 -----IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
                +Q  + DI   A+ ++            +   +HDEL+ E  +         I  
Sbjct: 588 FVENIVQAISRDILMYAIRTLS--------HCFICGHVHDELIIECSKSVSLDV---ICE 636

Query: 947 SM 948
            M
Sbjct: 637 QM 638


>gi|331697147|ref|YP_004333386.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
 gi|326951836|gb|AEA25533.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
          Length = 502

 Score =  148 bits (373), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 146/399 (36%), Gaps = 49/399 (12%)

Query: 579 VVSQMEITGIQIDQDLLKQV----------SAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
           V  +M   G+  D  +   +           +   + L +L ++I    G   N  SP +
Sbjct: 127 VAEEMRAEGLPWDAAVHDALLTAALGPRPAGSARPRRLAALADDIATAFGRPVNPDSPAE 186

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
           +    F ++                +     +   D+P +  +L +++L+++ S +  + 
Sbjct: 187 VLRA-FGRVGVELP-----------STRSWVLKQVDHPAVAPLLAYKELARLHSAHGWAW 234

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
                    R    Y +   ++GR A+       IP        +R A  + P  +L+ A
Sbjct: 235 LRTWV-HDGRFRPEYVVGGVVSGRWATRGGGALQIPK------AVRAAVRADPGNRLVVA 287

Query: 749 DYSQIELRILAHIAKITPLYQVF--ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           D +Q+E RILA +A    L +    +   D++  +A E+FG       P  R  AK    
Sbjct: 288 DAAQLEPRILAAMAGDAALARAGGRDQDSDLYAGLAHELFGG----AGPDGRAKAKLAVL 343

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866
           S IYG               +A  ++     RFP   E +E       +   V +  GR 
Sbjct: 344 SAIYGQ-----------TSGDAGAHLALLRRRFPAAVEVVEAAARAGEEGRIVRSWLGRT 392

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
                    + +      R   N  +Q +AA+     +  +  +L       +++   HD
Sbjct: 393 CPPAAPGDEQPARARARGRFTRNFVVQATAAEWALVLLAELRAALHAAGDPARLVFFQHD 452

Query: 927 ELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPL 962
           E++   P +    A++++  + + A         +R+P+
Sbjct: 453 EVLLHGPADGAGLAARLVQDAADTATRRLFGDTPVRIPV 491


>gi|308178280|ref|YP_003917686.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745743|emb|CBT76715.1| putative DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 549

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 168/462 (36%), Gaps = 77/462 (16%)

Query: 549 ILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE-IS 603
           I+ ++L  R  L  +    + L +    +     +  +ME  G+  D+   + +  E + 
Sbjct: 129 IIAMYLSQREALPQDPGPGQRLELLIHAESVGALIACEMEAAGLSWDEAGHRALLREQLG 188

Query: 604 KNL----------LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             +             ++    L     N  SP++L   L                +  +
Sbjct: 189 PRVSDYGRPPKLAAKAQQLATALGTPGLNPDSPQELLRAL------------HKAGFAVS 236

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
           +    ++   ++P+I  +LE+++LS++ ST+ D+  +    +  R H  Y L +  +GR 
Sbjct: 237 SVRAWELEQLNHPLIAEVLEYKKLSRLASTHGDAWLDQWV-KNGRFHPHYVLGTVTSGRW 295

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           A+             L   IR+   +      + AD  Q+E RILA I+    L +  + 
Sbjct: 296 AASGGGALQ------LPHSIRQVVRTREGSTFVVADGRQLEPRILAAISNDQQLQKAGQQ 349

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
             D+++ +      ++ + V+   R  AK    S+IYG                      
Sbjct: 350 D-DLYQWL------LDAKLVAS--RNDAKLGMLSVIYGGGGGASGAVGAA---------- 390

Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA------- 886
                FP    ++E+     +Q G V +  GR           +  +  ++ A       
Sbjct: 391 -LTRSFPTAMRFVEQAAATGQQGGGVRSFLGRGCP-PADEQWLAGQKATSDEASQRAADS 448

Query: 887 --------AINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936
                     N  +Q +AA+     M      +     +   K +  +HDE+VFE P   
Sbjct: 449 AARARGRFTRNFVVQATAAEWALVWMGHARHLIHQAGWSRICKQVFFVHDEIVFECPTGL 508

Query: 937 ITTASQIIVHSMEKAC---LPKINLRVPLKVNIKVSNNWQEE 975
                ++I H+   A      + + R P  V++ +S+N+ E 
Sbjct: 509 APQLQEVIRHAAMLAGRTLFGQASPRFP--VSVAISDNYAEA 548


>gi|320158402|ref|YP_004190780.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
 gi|319933714|gb|ADV88577.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
          Length = 687

 Score =  147 bits (372), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 104/643 (16%), Positives = 200/643 (31%), Gaps = 139/643 (21%)

Query: 451 SYLKKFFENEHFLKIGHN-IKYDKLVLHRY----GISMRGFEDIMLMSYVLDSGRSSHDI 505
             LK  +E +  + + HN I YD   L +      I      D +++S +L +     D+
Sbjct: 67  ELLKDLYEAD--VLVAHNGINYDVPALKKLFPFWDIQPTKVIDTLVLSRLLFADIKDRDM 124

Query: 506 ASI-------------------------AQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           + +                         + K   Y  +E                  +  
Sbjct: 125 SGVRRWRLREEGHEVTGWVLPPKLLGSHSLKAWGYRLQEYKGDYGEQEDAWAEFSEDMLI 184

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
           +  ++  V  +L   L  +           +L+  +  ++SQ E  G + D    +Q+  
Sbjct: 185 YCRQDVTVTCKLIRRLMKE--FPDASFKAMQLEHEIQWLMSQQERNGFKFDVAKAEQLYF 242

Query: 601 EISKNLLSLEENIYDLSGE---------------------------------KFNLSSPK 627
           ++  +  ++ + + D  G                                   FN +S  
Sbjct: 243 KLLGDRETIRQKLVDKFGTWYASNGVTTPKRSMNRMGMSYTAGAPYTKLKEVTFNPASRD 302

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
               +L           T   + K   +    ++    P  + + E+  L+K     A+ 
Sbjct: 303 HCAKVLQEA-GVIFTEFTDGNKPKIDEEV---LSHIKLPEAEMLNEFFMLNKRIGQIAEG 358

Query: 688 ---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI-KTDLGQKIRRAFISPPTK 743
                  +      +H   +    +TGR     PN+  +P  +   GQ+ R  F  P   
Sbjct: 359 NQAWLRLVTPEGF-IHGSINPNGAVTGRALHSHPNIAQVPSGRAPYGQECRECFTVPDGW 417

Query: 744 KLISADYSQIELRILAH--IAKITPLYQVFENSLDIHRMVAAEI----FGVNIEKVSPQM 797
            L+ +D S +ELR L +         Y       DIH   A       +GV  +K +P  
Sbjct: 418 VLLGSDASGLELRCLGNRMFPWDKGAYNKVILEGDIHWENAQAAGFVDYGVIRDKHNPDH 477

Query: 798 ---RRHAKTINFSIIYGISPFRLATQLRIPRSE--------------------------- 827
              R  AKT  ++ +YG     +  Q+     E                           
Sbjct: 478 ELRRGKAKTFIYAFLYGGGDELIGMQVGYTHEEYLAWKEAGAHIPIIKQLERRGERWTRE 537

Query: 828 -------AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
                    +  K++    P + + I+K K   + +GYV  + GR++     +S      
Sbjct: 538 RVCYILKGKEVKKKFLEGLPALDKLIKKCKKAAKDDGYVIGLDGRKVFCRSQHS------ 591

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK------MLLQIHDELVFEVP- 933
                 A+N  +Q   A I +   + V+  +++                +HDE+      
Sbjct: 592 ------ALNTQLQSDGALICKMWCVVVNLMMQERGYKHGFDGDYAFCAWVHDEVQVACRS 645

Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           E       QI   +M        ++  PL     + ++W E +
Sbjct: 646 EAIAQEMGQICKDAM-HFVERYYSVDCPLDAEFDIGSSWFETH 687


>gi|88856344|ref|ZP_01131003.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814428|gb|EAR24291.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 523

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 112/282 (39%), Gaps = 31/282 (10%)

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
             R H+   +    TGR A   P LQNI         +R   ++P  + L+S D+SQ+E 
Sbjct: 265 NGRTHSTLYVRRARTGRGAVTGPALQNIHR------GLRPLLMAPVGEVLVSLDFSQMEP 318

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS----PQMRRHAKTINFSIIYG 811
           R+ A +++   L    E+  D++  ++  I+G   +       P +R  AKT+   I YG
Sbjct: 319 RVSAGLSQDPDLLAALESG-DLYAELSRRIWGAEADDADGKPNPLLRDRAKTLMLGIFYG 377

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
                L   L I   +A   +   +  FPG+  Y    ++ VR      T  GR +    
Sbjct: 378 EGKNALGRALGIEPKDAKVLLDSVWAAFPGLQAYDLWLQSEVRAGRPAFTQDGRPVPLP- 436

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
                         AA+N  +Q  +ADI   A+  V   L      + + L +HDELV  
Sbjct: 437 ---------KRGLHAALNNRVQAESADIFWAAVARVAAVL---GPKS-LFLGVHDELVVS 483

Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLK-VNIKVSNNW 972
           VP      A  ++   M           VP+    + +  +W
Sbjct: 484 VPANRSEWARIVLEREMNTVFRG-----VPVTGTAVVIGRSW 520


>gi|302868656|ref|YP_003837293.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
 gi|302571515|gb|ADL47717.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
          Length = 552

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/391 (17%), Positives = 132/391 (33%), Gaps = 68/391 (17%)

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYDLSG-EKF 621
           +     V ++M   G+    D+   + A++           + L  L+  I D  G  + 
Sbjct: 162 ESAGALVAAEMGAAGLPWRADVHDAILADLLGEPSPVGGPPRRLAELQARIADAFGVRQV 221

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           +  SP +L    F ++                      +   ++P    +LE+++L +I 
Sbjct: 222 HADSPAELLRA-FARVGVDLPN-----------TRAWVLRGVEHPAAPLVLEYKELYRIW 269

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           + +  +  +       R H  Y     ++GR A+       IP        IR+A ++ P
Sbjct: 270 TAHGWAWRDAWVSGG-RFHPEYVPGGVVSGRWATRGGGALQIPK------VIRQAVVADP 322

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
               + AD  Q+E R+LA +++   L        D++  +A + F  +        R  A
Sbjct: 323 GWTFVVADAGQLEPRVLAAVSEDERLAAAGGAG-DLYAALARDAFAGD--------RAKA 373

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K      +YG +       L + R             +P    Y+E         G V +
Sbjct: 374 KVALLGAMYGQTGGAAVPALAVLRKN-----------YPTAFGYVEAAARTGEAGGLVRS 422

Query: 862 IFGRRIHYDEI----------------NSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             GR                       +SP +       R   N  IQ +AA+     + 
Sbjct: 423 WLGRTCPPGSAGFAEGEEAMPDGGADPHSPSARAARSRGRFTRNFVIQATAAEWASTLLA 482

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           ++   L       +++   HDE++   P  +
Sbjct: 483 TLRTEL--AGTEAELVFFQHDEVMVHCPAGQ 511


>gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916]
 gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916]
          Length = 653

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 123/671 (18%), Positives = 225/671 (33%), Gaps = 124/671 (18%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + +  + T        K +  A    +        +   + D  V       G+     E
Sbjct: 3   TLAIDVETYC--ELDIKSVG-AYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIP--E 57

Query: 449 ILSYLKKFFENE-HFLKIGHNIKYDKLVLHRY--GISMRG--FEDIMLMSYVLDSGRSSH 503
           +L +    +E+    LK   N  +++  +  +  G+      +E  M+ +  L    SS 
Sbjct: 58  VLEF--DIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTL-GLPSSL 114

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI---LQLWLLLRP-- 558
           D+   A K+    +K  +K  K+ I          + +     N+    ++ W   +   
Sbjct: 115 DMVGKALKFEEDKQK--MKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYC 172

Query: 559 ------KLIVEKLLHVYERL--DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
                 +  +  LL+ Y+    +K +  +   +   G+++D  L++            L+
Sbjct: 173 KRDVEVEREIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLK 232

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           E   +L+G   N +SP QL   +  ++     + TK        +  ++        +K 
Sbjct: 233 EEAINLTGLN-NPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKN-------VKK 284

Query: 671 ILEWRQL-SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP----- 724
           ILE RQL +K       ++ N      +         +  TGR A     +QN+P     
Sbjct: 285 ILELRQLMAKTSIKKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLP 344

Query: 725 -----------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
                                  I   L Q IR AFI     + I AD+S IE R++A++
Sbjct: 345 DLEEARNLLRNGDFETIEFLFDSIPDTLSQLIRTAFIPTDGNRFIVADFSAIEARVIAYL 404

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK-----TINFSIIYGISPFR 816
           A       VF+   DI+   A+++F V +EK        AK             G +   
Sbjct: 405 ANEQWRLDVFKEGGDIYCASASKMFKVPVEKHGINGHLRAKGKIAELALGYGGAGGAIRA 464

Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ-----------NG-------- 857
                 IP  +    +  +    P I ++        ++           +G        
Sbjct: 465 FDKTGSIPDEDLPKLVSDWRKASPHITQFWWNVDKAAKKAITEKTTVALHHGIKFIYDPG 524

Query: 858 --YVETIFGRRIHY--DEINSPKS-----------SIRNINERAAINAP------IQGSA 896
             +++   GR++ Y   +I   K                  +R     P      +Q  A
Sbjct: 525 VLFIQLPSGRKLSYLRPKIEEGKFGSDVITYEGMEQTSKQWKRIETYGPKLVENIVQAFA 584

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE--EITTASQIIVHSMEKACLP 954
            D     M  V K         K+++ +HDELV +V +E   +     I   S+E A   
Sbjct: 585 RDCLAETMARVEKK------GFKVVMHVHDELVLDVSKEIGSVEEICSIFAESIEWAPGL 638

Query: 955 KINLRVPLKVN 965
                 PLK +
Sbjct: 639 ------PLKAD 643


>gi|213865448|ref|ZP_03387567.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 101

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           EN L LVDGSS++YRA++A P L+    G P  A+ G  NML  L+   +     +H AV
Sbjct: 6   ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA 104
           +FD    TFR+E++  YK++RP +P+ L  Q+  +    +A
Sbjct: 61  VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKA 101


>gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           LL3]
          Length = 648

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 106/681 (15%), Positives = 217/681 (31%), Gaps = 145/681 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T +        +   +    +  D    +     D       D      L 
Sbjct: 1   MKTLSIDIETFS----SVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLD-SGRSS 502
            E++  L     +   +K  +N  +++  + ++    +    +    + +  L   G   
Sbjct: 57  HEVIVALT----SSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPG--- 109

Query: 503 HDIASIAQ----------------KWLSYTRKEILKSRKSSIPIDKISD---SQVQEHAI 543
            ++  +A+                ++ S   K    + +    + + +     + + +  
Sbjct: 110 -NLDGVAKALKLSEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCG 168

Query: 544 ENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           ++  V   +   +     L  E+ L   ++           +   G++ID DL+K   A 
Sbjct: 169 QDVEVERSIKNRISKFELLKAEQELWALDQ----------DINDRGVRIDADLVKHAIAC 218

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
             +    L     +L+G   N +S  QL   L  K      +  K        +  E I 
Sbjct: 219 DEQYQAGLMVEAKELTGLP-NPNSTAQLKTWLEDK-GLSVSSLAK-------DKIEELIE 269

Query: 662 CGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
             D+  +  +L  RQ ++K       ++   +   ++         ++ TGR A     +
Sbjct: 270 KTDDASVHRVLRLRQEMAKTSVKKYLAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQV 329

Query: 721 QNIP----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQ 752
           QN+P                            +   L Q +R AFI     +   +D+S 
Sbjct: 330 QNLPQNKIADLDTARTLLKGGHYEAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSA 389

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--PQMRRHAKTINFSIIY 810
           IE R++A +A       VF     I+   AA++F V +E ++    +R+  K    ++ Y
Sbjct: 390 IEARVIAWLAGEGWRLDVFNTHGKIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGY 449

Query: 811 GISPFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-----------RQ 855
                 L       + +   E    +K +      I ++    +               Q
Sbjct: 450 QGGKGALIQMGALTMGLDEDELPGLVKAWRTANKKIVQFWYDVEAAAVKAVKERKPVKIQ 509

Query: 856 NG----------YVETIFGRRIHY-------------------DEINSPKSSIRNINERA 886
           +G          +V+   GRR+ Y                    ++ S K    N     
Sbjct: 510 HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEALTYEGKLESGKWGRLNTYGGK 569

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP--EEEITTASQII 944
            +   +Q  A D     +I +  +        K ++ +HDE V +VP  + E+     I 
Sbjct: 570 LVENIVQAVARDCLAVTLIRLDDA------GYKTVMHVHDEAVLDVPRGKNELDKVEAI- 622

Query: 945 VHSMEKACLPKINLRVPLKVN 965
              M +       L  PL  +
Sbjct: 623 ---MGEPIPWAKGL--PLTAD 638


>gi|32442299|gb|AAP82220.1| DNA polymerase [Podovirus GOM]
          Length = 396

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 153/416 (36%), Gaps = 72/416 (17%)

Query: 488 DIMLMSYVLDS-GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D +++S + +      H + +  ++         L  RK           +V E+   + 
Sbjct: 1   DTLVLSRLYNPQMEGGHSLRAWGER---------LGFRKGDHDDWSTLSDEVIEYCERDL 51

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
           +V  +L+  L  KL   +   +   L+  +  ++++ E TG ++D      + A++ +  
Sbjct: 52  DVTAKLYTELTEKLEEFQGESI--ELEHEVQRIITEQEKTGWKLDVKRAFDIQAKLKQRS 109

Query: 607 LSLEENIY------------------------------------DLSGE-------KFNL 623
           + +E  ++                                    D++G        +FNL
Sbjct: 110 MEVEREVHKTFTPLPVFDKEVTPKYNKDGSLSVVGLKFLGDRYTDVAGPFSRVSFPEFNL 169

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            S +Q+   L     +     T+ GQ          ++  D P  K I E+  + K ++ 
Sbjct: 170 GSRQQIARHL-QFFGWKPKLFTEKGQAIVDEGV---LSRVDIPEAKLIAEYLLIQK-RTA 224

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIRRAFISPPT 742
              S    + +   RVH   +    +TGR+    PN+  +P   +  G + R  +  P  
Sbjct: 225 QVQSWIEAVEEDG-RVHGRVNPIGAVTGRMTHSSPNMAQVPASYSPYGTECRECWTVPKG 283

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            +L+  D + +ELR+LAH                 + +   ++   N +      R  AK
Sbjct: 284 YRLVGIDAAGLELRMLAHYMNDE---------EYTNEVTNGDVHTTNQKNAGLATRDLAK 334

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           T  ++ +YG    ++   +   R + A+  +++ +  P +    E+     ++ GY
Sbjct: 335 TFIYAFLYGAGDAKIGAIVGGSRRDGAELKEKFLNNTPPLRHLRERVAKSAKR-GY 389


>gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 645

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 111/673 (16%), Positives = 217/673 (32%), Gaps = 132/673 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  I T +        I   +       +    +     D       D      L 
Sbjct: 1   MQTLSIDIETFS----DVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH 503
            EI+  L     NE+ +K   N +++++ L R+    ++   ++   + +  L       
Sbjct: 57  AEIIEALL----NENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLG---FPL 109

Query: 504 DIASIAQ----------------KWLSYTRKE--ILKSRKSSIP-IDKISDSQVQEHAIE 544
            +  +AQ                ++ S   K   + + R  ++P       +  +++ I 
Sbjct: 110 SLDGVAQVLGLTEQKMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIR 169

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           +  V   +   L    I E         ++    +  ++   G+ +D DL+ +       
Sbjct: 170 DVEVERAIRKKLSRYPISEN--------EQRNYILDHEINDRGVFVDLDLVARAMECDRL 221

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +          L+G   N +S  QL   L            K           +     D
Sbjct: 222 HKEDTFTEAQRLTGLD-NPNSVAQLKQWLIENGVEVDSLSKK--------AVSDLAKEAD 272

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
             + + +    QL+K      +++   +    +         +  TGR A     +QN+P
Sbjct: 273 GEVERLLNLRLQLAKTSIKKYEAIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLP 332

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       +   L + IR AFI     + I AD+S IE R
Sbjct: 333 QNHLKDLTLARNLVKSGDFDTLALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEAR 392

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSIIYGISP 814
           ++A +A       VF     I+   A+++F V IE++  +  +R+  K    ++ YG S 
Sbjct: 393 VIAWLAGEKWRMDVFATHGKIYEASASQMFKVPIEEITKTSALRQKGKISELALGYGGSV 452

Query: 815 FRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT------------------KNF 852
             L    A  + +   E    +  +    P I +                          
Sbjct: 453 GALTAMGALDMGVAEDELQGLVTAWRQANPNITKLWWDIDKAAIKAVKKKTTVMVGKIKL 512

Query: 853 VRQNG--YVETIFGRRI-HYDEINSPKSSIRNI-----------NERAAINAP------I 892
             ++G  ++    GRR+ +      P    R+             ER     P      +
Sbjct: 513 QYESGIMFITLPSGRRLSYIKPRIEPNKFERDAVTYEGIGATKKWERIETYGPKLVENIV 572

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952
           Q  A D+   AM+ V ++        ++++ IHDE+V E P    +   + +   M  A 
Sbjct: 573 QAIARDLLAEAMLRVAEN------GYEIVMHIHDEIVIEAPLNFGSL--KDVCEVM--AI 622

Query: 953 LPKINLRVPLKVN 965
            P     +PL+ +
Sbjct: 623 APTWAESLPLRAD 635


>gi|219885673|gb|ACL53211.1| unknown [Zea mays]
 gi|238009624|gb|ACR35847.1| unknown [Zea mays]
          Length = 352

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 15/233 (6%)

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              + D      +R  + P YKA+R +   +       V    +   +  + + G+EADD
Sbjct: 117 VVAVLDGDGGNEYRRRLLPSYKAHRAR--GVGTGADTRVVDVLRQCNVAVVRVDGYEADD 174

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP 175
           ++AT T    ++G+ V I S DKD  QL+S    L   +    +     + H + ++   
Sbjct: 175 VVATLTEQVLQKGYRVAIASPDKDFKQLISDDVQLVVPIPEIGRWSFYTLRHYVAQYKCD 234

Query: 176 PEKMVCLQALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR 229
           P   + L+   GD  D +PG    +PG G KTA  LLQ++G+LEN+L       + +   
Sbjct: 235 PTADLSLRCFMGDEADGVPGIQHLVPGFGRKTAVKLLQKHGSLENLLNTAAIRTVGRGYA 294

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALE 280
           ++ + ++A+  R + +++ L+ DV +      L   +   +   L  FL  L 
Sbjct: 295 QDALTKHADYLRKNYQVLSLKRDVNVQFDDSWLSPRNTCSDANVLADFLLKLS 347


>gi|254386231|ref|ZP_05001542.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194345087|gb|EDX26053.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 413

 Score =  145 bits (367), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 141/411 (34%), Gaps = 85/411 (20%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +     V ++M   G+    D  + +  E+           + L  L + I D
Sbjct: 1   MRLLTASESAAFLVAAEMHRAGLPWRADTHRALLTELLGERYAGGGQPRRLAELADRISD 60

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P  +           +G K K+ +         +I   D+P ++ ++E++
Sbjct: 61  AFGRRVRPDLPADVIKAFAE-----AGIKLKSTR-------RWEIQEIDHPAVEPLVEFK 108

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I + +    L + ++    R    +    T TGR  +       IP        IR
Sbjct: 109 KLYRIYTAHGWSWLADWVHDG--RFRPEFIPGGTFTGRWVTNGGGALQIPK------VIR 160

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++ P  +L+ AD  Q+E R+LA I++     +V     D++  ++ + F  +     
Sbjct: 161 RAVVADPGWRLVVADADQMEPRVLAAISRDPAFMEVAGRPEDLYTAISRQGFAGD----- 215

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG +       L                RFP    Y+++      
Sbjct: 216 ---RDMAKLAVLGAVYGQTSGDGLKNL-----------AALRRRFPRAVAYVDEAAKAGE 261

Query: 855 QNGYVETIFGRRIH--------------------------------YDEINSPKSSIRNI 882
           +   V T  GR                                        S  S  R  
Sbjct: 262 EGRLVRTWLGRTCPPPAASEHGDTDGEAGIPQAAPQSSAPDREDGRTPAYASSHSRARG- 320

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
             R   N  +QGSAAD     + ++ +++    +  +++   HDE++   P
Sbjct: 321 --RFTRNFVVQGSAADWALLLLAALRQAIAAAGMRAELVFFQHDEVIVHCP 369


>gi|194383398|dbj|BAG64670.1| unnamed protein product [Homo sapiens]
          Length = 611

 Score =  145 bits (367), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 143/291 (49%), Gaps = 22/291 (7%)

Query: 463 LKIGHNIK-YDKLVLHRYG-----ISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLS 514
             I  N K + ++VL  +G       +  F   D  + ++++D   ++     + +K+  
Sbjct: 315 PVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY-- 372

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              K I  + K +      S + V ++  EN   + +L + L  KL    L  ++  L+ 
Sbjct: 373 -CEKSI--TVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL 429

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
           P+I +++ ME   IQ++++ +++ SA +   L  LE+  + ++GE+F ++S  QL +ILF
Sbjct: 430 PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREILF 489

Query: 635 TKLKFP------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            KLK        S  +T   ++ +T++ +       +P+ K ILE+RQ+ KIKST+ D L
Sbjct: 490 GKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGL 549

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEP-NLQNIPIKTDLGQKIRRAFI 738
              + K +  + + ++   T+TGRL++  P   + +        ++  A +
Sbjct: 550 LACMKKGS--ISSTWNQTGTVTGRLSAKHPICARQVASDFQKCVEVSDAMM 598


>gi|115441359|ref|NP_001044959.1| Os01g0874800 [Oryza sativa Japonica Group]
 gi|56784844|dbj|BAD82084.1| putative DNA polymerase I 3'-5' exo domain [Oryza sativa Japonica
           Group]
 gi|113534490|dbj|BAF06873.1| Os01g0874800 [Oryza sativa Japonica Group]
 gi|215740431|dbj|BAG97087.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 358

 Score =  145 bits (367), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 15/239 (6%)

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              + D      +R  + P YKA+RP+ P         V    +   +P + + G+EADD
Sbjct: 120 VVAVLDGEGGNEYRRRLLPSYKAHRPRGPG--TGADSRVIDVLRECNVPVVRVDGYEADD 177

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP 175
           ++AT T    ++GF V I S DKD  QL+S    L   +    +     + H + ++   
Sbjct: 178 VVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCD 237

Query: 176 PEKMVCLQALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR 229
           P   + L+   GD  D IPG    +PG G KTA  LL+++G+LEN+L       + +   
Sbjct: 238 PTADLSLRCFIGDEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYA 297

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLIN 286
           ++ ++++A+  R + +++ L+ DV + +    L   D   +   L  F+      + I 
Sbjct: 298 QDALVKHADYLRKNYEVLSLKRDVKVQLDDRWLSTRDSCNDSSVLSDFILKFNEGQNIR 356


>gi|19386844|dbj|BAB86222.1| putative DNA polymerase I [Oryza sativa Japonica Group]
 gi|20804753|dbj|BAB92438.1| putative DNA polymerase I 3'-5' exo domain [Oryza sativa Japonica
           Group]
 gi|215686883|dbj|BAG89733.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222619621|gb|EEE55753.1| hypothetical protein OsJ_04262 [Oryza sativa Japonica Group]
          Length = 356

 Score =  145 bits (367), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 15/239 (6%)

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              + D      +R  + P YKA+RP+ P         V    +   +P + + G+EADD
Sbjct: 120 VVAVLDGEGGNEYRRRLLPSYKAHRPRGPG--TGADSRVIDVLRECNVPVVRVDGYEADD 177

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP 175
           ++AT T    ++GF V I S DKD  QL+S    L   +    +     + H + ++   
Sbjct: 178 VVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCD 237

Query: 176 PEKMVCLQALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR 229
           P   + L+   GD  D IPG    +PG G KTA  LL+++G+LEN+L       + +   
Sbjct: 238 PTADLSLRCFIGDEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYA 297

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLIN 286
           ++ ++++A+  R + +++ L+ DV + +    L   D   +   L  F+      + I 
Sbjct: 298 QDALVKHADYLRKNYEVLSLKRDVKVQLDDRWLSTRDSCNDSSVLSDFILKFNEGQNIR 356


>gi|159476518|ref|XP_001696358.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
 gi|158282583|gb|EDP08335.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
          Length = 894

 Score =  145 bits (367), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 103/595 (17%), Positives = 199/595 (33%), Gaps = 116/595 (19%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-----FEDIMLMSYVLDS----- 498
           +LS L +   +     +  N K         G            D +L++++        
Sbjct: 327 LLSLLDEMLVSAPCPALCCNAKALIREALALGWRPPPPWRLRLLDPVLLAWLEAPQLAQR 386

Query: 499 ---GRSSHDIASIAQKWLSYTRKEILKSR-KSSIPIDKISDSQVQEH-AIENSNVILQLW 553
                 ++ + ++    L  +      +  + + P+ ++    V      E   +  Q W
Sbjct: 387 DEKEIEAYTLETLCGPRLGVSLDSSGGAGSELAGPLLRLRRGLVASAQLFETVRLRAQPW 446

Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
             LRP+           +++  +  ++ +ME  G+ +D + L++ +  +   +  L    
Sbjct: 447 --LRPE---------AVQVEMQLAFLLGRMEAVGMAVDAEGLERKAGAVQARMDGLVLQY 495

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN-CGDNPIIKNIL 672
             L   +     P  L  ++              G        L +++      ++  + 
Sbjct: 496 RALQNVRTKWLQPDWLPLLVARSGGLALPGAGGGGSGGGGQLQLPRLSQAVAAEVLMVLA 555

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
               ++K +     +  +      Q                +    +  +  ++T L   
Sbjct: 556 PESAVTKYEVKVEVAAADWPEGLEQEEPQQAEEQEQAGQSDSGGGGSGGDGGVRT-LTVV 614

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
            R AF++P  + L+SADYSQIELR+LAH++                              
Sbjct: 615 ARAAFVAPAGRLLVSADYSQIELRLLAHLS------------------------------ 644

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQL---RIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           +S + R  AK I ++IIYG+SP  LA  L    +   EA      +   F G+  +I  +
Sbjct: 645 ISSRDREQAKRIIYAIIYGMSPQGLAQALSDHGVEVKEATALRSSFLRHFAGVQSFITSS 704

Query: 850 KNFVRQNGYVETIF-GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV- 907
            +  R++G++ T   GRR     + S    +R   ER  +N+ +QGSAAD+ + AM    
Sbjct: 705 LHHARRHGFITTGLLGRRRPISGLASNDVRLRAEAERKVVNSIVQGSAADLIKMAMTMWG 764

Query: 908 -----------------------------------------------HKSLEDHKLATKM 920
                                                                 +    +
Sbjct: 765 TYSHPPAAGANEQQKQKQPQPQQTGGAAGAATGTRAAATDAAPQLPPGCPPPLEEGCVDL 824

Query: 921 LLQIHDELVFEV--PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           +  IHDE++FE     E +      +   M       + L VPL V + V  +W 
Sbjct: 825 IGSIHDEILFECDARPEVLQRLVAAVRCLM----CGVVALDVPLCVKLSVGQSWG 875


>gi|315504872|ref|YP_004083759.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
 gi|315411491|gb|ADU09608.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
          Length = 552

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/392 (17%), Positives = 132/392 (33%), Gaps = 70/392 (17%)

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYDLSG-EKF 621
           +     V ++M   G+    D+   + A++           + L  L+  I D  G  + 
Sbjct: 162 ESAGALVAAEMGAAGLPWRADVHDAILADLLGEPSPVGGPPRRLAELQARIADAFGVRQV 221

Query: 622 NLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           +  SP +L        +  P+                  +   ++P    +LE+++L +I
Sbjct: 222 HADSPAELLRAFARAGVDLPNTR-------------AWVLRGVEHPAAPLVLEYKELYRI 268

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            + +  +  +       R H  Y     ++GR A+       IP        IR+A ++ 
Sbjct: 269 WTAHGWAWRDAWVSGG-RFHPEYVPGGVVSGRWATRGGGALQIPK------VIRQAVVAD 321

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           P    + AD  Q+E R+LA +++   L        D++  +A + F  +        R  
Sbjct: 322 PGWTFVVADAGQLEPRVLAAVSEDERLAAAGGAG-DLYAALARDAFAGD--------RAK 372

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK      +YG +       L + R             +P    Y+E         G V 
Sbjct: 373 AKVALLGAMYGQTGGAAVPALAVLRKN-----------YPTAFGYVEAAARTGEAGGLVR 421

Query: 861 TIFGRRIHYDEI----------------NSPKSSIRNINERAAINAPIQGSAADITRRAM 904
           +  GR                       +SP +       R   N  IQ +AA+     +
Sbjct: 422 SWLGRTCPPGSAGFAEGEEAMPDGGADPHSPSARAARSRGRFTRNFVIQATAAEWASTLL 481

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            ++   L       +++   HDE++   P  +
Sbjct: 482 ATLRTEL--AGTEAELVFFQHDEVMVHCPAGQ 511


>gi|4678934|emb|CAB41325.1| putative protein [Arabidopsis thaliana]
          Length = 384

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 113/286 (39%), Gaps = 96/286 (33%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + L+DG+S IYRA+Y    L+R + G   +A             +   + + + F
Sbjct: 114 SSNGRVMLIDGTSIIYRAYYKL--LARLNHGHLAHA-------------DGNADWVLTIF 158

Query: 62  ----AVIFDYPAV----------------------TFRNEIYPDYKANRPKIPEMLLPQL 95
                V+FD+                          FR+ +YP YK+NRP  P+ ++  L
Sbjct: 159 SSLSLVVFDHDEPFSGVPYGTTSNSSTGYRSAKGMNFRHTLYPAYKSNRPPTPDTIVQGL 218

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
             ++ + +A  I  IE                       V ++S DKD  Q++SP+  L 
Sbjct: 219 QYLKASIKAMSIKVIE-----------------------VRVVSPDKDFFQILSPSLRLL 255

Query: 156 DTV--------------KEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGIG 200
                            +     +E   KK+G + P + V + AL GD  DNIP      
Sbjct: 256 RLTPRGSDCVKATASCGRMASFGMEDFAKKFGNLEPAQFVDIIALAGDKSDNIP------ 309

Query: 201 YKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
                      G LEN+L +   IK+ K +E+++  A+ A LS+KL
Sbjct: 310 -----------GTLENLLQSVDEIKEGKIKESLIASADQAILSKKL 344


>gi|152968215|ref|YP_001363999.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
 gi|151362732|gb|ABS05735.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
          Length = 592

 Score =  145 bits (366), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 80/419 (19%), Positives = 164/419 (39%), Gaps = 60/419 (14%)

Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQV-----------SAEISKNLLSLEENIYDLSGEKF 621
           +     +  ++  TG+ +D+ + +++           + E +++    +  +++  G + 
Sbjct: 217 ESAAALLAVELSRTGLPVDRAVAERIVADAVGPRPGDAGEEARSRAVRDAPVHEHLG-RV 275

Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
           +L +P Q+   L   L F             T     +     +P +  +L WR+  ++ 
Sbjct: 276 DLRNPAQVLAAL-RGLGFDVP---------DTRAWRLERLREAHPGVAALLAWRKAERLA 325

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
           +TY     +       R+   +S A    GR+ + +  L N+P       ++R A  + P
Sbjct: 326 TTYGYRWLDEHVGADGRLRGEWSGADAAAGRMTA-QAGLHNLPS------ELRPAVAAEP 378

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+ AD  Q+E R+LA ++    L     +  D++  VAA + GV+        R  A
Sbjct: 379 GHVLVRADLGQVEPRVLAAVSGDAGLVAATRDD-DLYAPVAAAL-GVD--------RPTA 428

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           K    + +YG +              A + ++R    +P    Y+   +    +   V T
Sbjct: 429 KVAVLAAMYGQTSGA-----------AGEALRRMERAYPTALGYLRAAELAGLEGRDVRT 477

Query: 862 IFGRRIHYDEIN-SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
             GR +   ++  +   +      R A NA +QG+AA++ +    +V   L     A ++
Sbjct: 478 YGGRLVRISDLAPAEPGAATAARGRFARNAVVQGAAAELFKAWAAAVRAGL--AGSAGRI 535

Query: 921 LLQIHDELVFEVPEEEIT----TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +L +HDEL+  VP  +        +  +  + E+         V    ++ V   W E 
Sbjct: 536 VLCLHDELLLHVPGPDADRAARLLAVALAQTAERWSAGSG---VRFVADVSVVRRWSEA 591


>gi|195651987|gb|ACG45461.1| DNA polymerase I [Zea mays]
          Length = 346

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 15/233 (6%)

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              + D      +R  + P YKA+R +   +       V    +   +  + + G+EADD
Sbjct: 111 VVAVLDGDGGNEYRRRLLPSYKAHRAR--GVGTGADTRVVDVLRQCNVAVVRVDGYEADD 168

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP 175
           ++AT T    ++G+ V I S DKD  QL+S    L   +    +     + H + ++   
Sbjct: 169 VVATLTEQVLQKGYRVAIASPDKDFKQLISDDVQLVVPIPEIGRWSFYTLRHYVAQYKCD 228

Query: 176 PEKMVCLQALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR 229
           P   + L+   GD  D +PG    +PG G KTA  LLQ++G+LEN+L       + +   
Sbjct: 229 PTADLSLRCFMGDEADGVPGIQHLVPGFGRKTAVKLLQKHGSLENLLNTAAIRTVGRGYA 288

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALE 280
           ++ + ++A+  R + +++ L+ DV +      L   +   +   L  FL  L 
Sbjct: 289 QDALTKHADYLRKNYQVLSLKRDVNVRFDDSWLSPRNTCSDANVLADFLLKLS 341


>gi|332671808|ref|YP_004454816.1| DNA-directed DNA polymerase [Cellulomonas fimi ATCC 484]
 gi|332340846|gb|AEE47429.1| DNA-directed DNA polymerase [Cellulomonas fimi ATCC 484]
          Length = 567

 Score =  145 bits (365), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/470 (14%), Positives = 144/470 (30%), Gaps = 75/470 (15%)

Query: 542 AIENSNVILQLWLLLRPKLIV------EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           A +  +  L +   L  +L           L +    +     +  +M   G+  D  + 
Sbjct: 136 AHDAVDAPLDVADELARQLAAVAGSTQPGRLRLLLAAESTGALIAQEMRHDGMPWDVTVH 195

Query: 596 KQVSAEI----------SKNLLSLEENIYD-LSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
             +  ++             L +L   I + L     N  S   L   L           
Sbjct: 196 DALLTDLLGPRPRGGGRPARLEALVARIREELVQPTLNPDSQPDLLRGL----------- 244

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            +   +   +    +I   D+P+   +LE++ LS++ S    +  +       R    Y 
Sbjct: 245 -RLAGFDVASTSKWEIRGIDHPVRDVLLEYKTLSRLLSANGWAWMDTWI-HDGRFRPEYV 302

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
               ++GR A+       +P       +           +L+ AD +Q+E R+LA ++  
Sbjct: 303 PGGVVSGRWATSGGGALQLPAAVRAAVRADD------GWRLVVADAAQLEPRVLAAMSGD 356

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
             +               A+++   ++      R  AK      IYG             
Sbjct: 357 GAMAAAGRQ---------ADLYQGVVDAGIVATRSDAKYAMLGAIYGA-----------T 396

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE------------- 871
              +A  + +    +P     +E       +   V T  GR     +             
Sbjct: 397 TGASAALMPQLTRAYPQAVALVEAAARAGERGEAVTTWLGRSSPTPDAAWQAELSAASAE 456

Query: 872 -----INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
                             R   N  +QG+AA+     M S+ + L D      ++  +HD
Sbjct: 457 GAAAEDVRAVRRRARDWGRFTRNFVVQGTAAEWALCWMASLRRRLRDVPGRPHLVFFLHD 516

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKI-NLRVPLKVNIKVSNNWQEE 975
           E++   P       +Q +  +  +A      +  V   +++ V  ++ + 
Sbjct: 517 EVMVHSPAPVAEEVAQAVRDAAVEAGRLLFGDTPVDFALDVSVVESYDQA 566


>gi|168021165|ref|XP_001763112.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685595|gb|EDQ71989.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 302

 Score =  145 bits (365), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 41/301 (13%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +    L+LVD            PL        P   I  +  +L+  +            
Sbjct: 14  KSRKRLYLVDVH----------PLCYNGSKVQPRKVIE-WMTLLFSEVVQDNP------I 56

Query: 62  AVIFDYPAVT-FRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQAFGIP 108
             + D      +R  + P YKA R                  L   LPL+        IP
Sbjct: 57  IAVMDGERGNEYRRALLPSYKAKRNFYRPLGAGYGHSSAANDLRKALPLIHGFLSLCHIP 116

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKID 164
            ++ +  EADD+IAT    A  +GF V I S D D  QL++P   +   V    +     
Sbjct: 117 VVKQEFAEADDVIATLARQARHKGFQVVIASPDMDFQQLLTPDVHMLLPVPELGRWSFFT 176

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILIN 220
           +++ + +    P+  + L+ L GD  DN+PG+    PG G  TA  L+ ++G+LEN+L  
Sbjct: 177 LQNYVAQNTATPDLELGLKCLLGDVSDNVPGLPDVSPGFGKNTALKLMLKHGSLENLLAA 236

Query: 221 AS--RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL-ISFLK 277
           A+   + ++  ++ + ++    R + +++ LRTDV + +  E       +   L +  L 
Sbjct: 237 AATRTVGREYIQDALKKHENLLRRNLQVLSLRTDVDVVLEEEWCRSRCIDNDILALQLLN 296

Query: 278 A 278
            
Sbjct: 297 E 297


>gi|239980380|ref|ZP_04702904.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291452241|ref|ZP_06591631.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291355190|gb|EFE82092.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 562

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 136/406 (33%), Gaps = 78/406 (19%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           + +    +     V ++M   G+    +  ++V  E+           + L  L + +  
Sbjct: 158 MRLLTASESAGALVAAEMTAAGLPWRAETHREVLRELLGERYGGSGEPRRLAELADEVSA 217

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G +     P ++    F +                T+    ++   D+P +  +L  +
Sbjct: 218 AFGHRVRPELPAEVVRA-FARAGIKV-----------TSTRRWELEKIDHPAVAPLLAHK 265

Query: 676 QLSKIKSTYAD-SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
           +L +I   +    L + +  R  R    Y    T++GR A+       IP        IR
Sbjct: 266 KLYRIWVAHGWQWLADWV--RDGRFRPSYLPGGTVSGRWATNGGGALQIPK------VIR 317

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           RA ++ P  +L+ AD  Q+E RILA ++    L +V     D+++ V+   F  +     
Sbjct: 318 RAVVADPGWRLVVADADQLEPRILAAVSGDRALMEVASRPDDLYQAVSDRAFQGD----- 372

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
              R  AK      +YG +       L                RFP   +++++      
Sbjct: 373 ---RDLAKLAVLGAVYGQTSGDGLKNL-----------AALRRRFPAAVDHVDEAARAGE 418

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINE------------------------RAAINA 890
           +   V T  GR        +P                                 R   N 
Sbjct: 419 EGRLVRTWLGRTC--PPATAPGGPAEEAGIPDALPEGDTGGYAPGASSGARARGRFTRNF 476

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            +QGSAA      ++          L  +++   HDE++   P+EE
Sbjct: 477 VVQGSAA--DWALLLLAALRSSLAPLRAELVFFQHDEVIVHCPDEE 520


>gi|218189462|gb|EEC71889.1| hypothetical protein OsI_04629 [Oryza sativa Indica Group]
          Length = 356

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 15/239 (6%)

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              + D      +R  + P YKA+RP+ P         V    +   +P + + G+EADD
Sbjct: 120 VVAVLDGEGGNEYRRRLLPSYKAHRPRGPG--TGADSRVIDVLRECNVPVVRVDGYEADD 177

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP 175
           ++AT T    ++GF V I S DKD  QL+S    L   +    +     + H + ++   
Sbjct: 178 VVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCD 237

Query: 176 PEKMVCLQALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR 229
           P   + L+   GD  D +PG    +PG G KTA  LL+++G+LEN+L       + +   
Sbjct: 238 PTADLSLRCFIGDEADGVPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYA 297

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLIN 286
           ++ ++++A+  R + +++ L+ DV + +    L   D   +   L  F+      + I 
Sbjct: 298 QDALVKHADYLRKNYEVLSLKRDVKVQLDDRWLSTRDSCNDSSVLSDFILKFNEGQNIR 356


>gi|307106799|gb|EFN55044.1| hypothetical protein CHLNCDRAFT_134899 [Chlorella variabilis]
          Length = 1781

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 129/327 (39%), Gaps = 60/327 (18%)

Query: 542  AIENSNVILQLWLLLRPKLIVEKL--LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            A   +      W  ++P+L       + V    + P+  V++ ME  G+ ID   L+ + 
Sbjct: 1456 ACCTAAASRAAWEEVQPQLQAINGSTMAVLLEQEMPLAVVLAGMEAVGVGIDTQHLQSLR 1515

Query: 600  AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-------FPSGAKTKTGQWKT 652
            +++ +    +E  I    G + +LS  K++ D+LF KL+        P   K K G +  
Sbjct: 1516 SQLEQRRKDIELEIARALGRRLDLSKFKEVSDVLFGKLEGQLGLQPPPCAKKLKRGGYSA 1575

Query: 653  TAQDLE---QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN---------------- 693
              + ++   ++N    P++K I E R+L+     +   L                     
Sbjct: 1576 NKEVMQALVRLNPDCPPVVKLIAEHRRLA-YSVWFIRQLLQCARAGAALAQQLEPAAGAA 1634

Query: 694  -----KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD-------------------- 728
                     R+ T     ++ TG  A L   L+   +                       
Sbjct: 1635 PLGRAGGGPRIWTVLHQTNSDTGAGAVLLGLLRRCCVPRTHELRMLLKGTAREGDDVSAS 1694

Query: 729  -----LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-DIHRMVA 782
                 L   +R+AF++ P   L+ ADY  IELR++AH ++   L   F++   D  R++A
Sbjct: 1695 GQHRLLEANVRKAFVAAPGCVLLGADYRAIELRMMAHFSQDEKLLATFQDGQHDPFRLLA 1754

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSII 809
            A+  G  + +VS   R+  K + + I+
Sbjct: 1755 AKWLGKELGQVSQTDRQLIKHLQYGIM 1781


>gi|229819538|ref|YP_002881064.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
 gi|229565451|gb|ACQ79302.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
          Length = 585

 Score =  144 bits (364), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 82/518 (15%), Positives = 161/518 (31%), Gaps = 81/518 (15%)

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
            +  H   +  +       L R G+ +    D+ L   +L    SS   + +A+      
Sbjct: 53  LDGGHVRWVWDDTSRWYPELLRAGVRVERCHDLRLAHTILRRSTSSAS-SDLARADPGPW 111

Query: 517 R--KEILKSRKSSIP------IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
               E+ +  + + P       ++      +    +    +      LR        L +
Sbjct: 112 DVAPEVGEGAEEASPSSTPSLFEQWEAPPPRPERPDPLAELALQEAALRSAGDDAGRLRL 171

Query: 569 YERLDKPMIDVVSQMEITG----IQIDQDLLKQVSAEISKN-------LLSLEENIYD-L 616
               +     V S+++  G    + +    L ++              L +L   + D L
Sbjct: 172 LIAAESSGALVASELQHDGLPFRVDVHDATLTRMLGPRPARVGQRPALLEALAAQVRDAL 231

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
                N  S   L   L            +      T+    ++   ++P +  +LE+++
Sbjct: 232 DVPTLNPDSQPDLLRAL------------RRSGLDVTSTSKWELQRSEHPAVAPLLEYKK 279

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           L ++ S    +  +       R    +     +TGR A+       +P        IR A
Sbjct: 280 LYRLLSANGWAWMDQWVTDG-RFRAEWVPGGVVTGRWATRGGGALQLPK------GIRSA 332

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
             +     L+ AD +Q+E RILA ++    +        D++  +        +E     
Sbjct: 333 VRADDGWLLVIADAAQLEPRILAAMSGDDAMVAAGARG-DLYAGL--------VEAGVVD 383

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            R HAK    + +YG               +AA  + R    +P     ++         
Sbjct: 384 TRAHAKVAMLAALYGA-----------TTGQAAMLVPRLARAYPRAVGLVDAAARVGENG 432

Query: 857 GYVETIFGRRIH------------------YDEINSPKSSIRNINERAAINAPIQGSAAD 898
           G V T  GR                       +      S      R   N  +QG+AA+
Sbjct: 433 GVVSTWLGRSSVPPGEAWHAAQSAASAPDATPDDERRARSRARDWGRFTRNFVVQGTAAE 492

Query: 899 ITRRAMISVHKSLEDHKLAT---KMLLQIHDELVFEVP 933
                M ++ + L   +      ++   +HDEL+   P
Sbjct: 493 WALCWMAALRRRLASLEGDAGVPRLAFFLHDELIVHTP 530


>gi|270585837|ref|ZP_06221408.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270318509|gb|EFA29597.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 141

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/142 (49%), Positives = 90/142 (63%), Gaps = 1/142 (0%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME TG+ ID D L   S EI+  L +LE+  Y L+G+ FNL+S KQL +ILF KL  P  
Sbjct: 1   MERTGVLIDSDALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVL 60

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
            KT  G   T  + LE++    + + K ++E R LSK+KSTY D LP  +N +T RVHT 
Sbjct: 61  QKTPKGAPSTNEEVLEELAYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTS 119

Query: 703 YSLASTMTGRLASLEPNLQNIP 724
           Y  A T TGRL+S +PNLQNIP
Sbjct: 120 YHQAVTATGRLSSSDPNLQNIP 141


>gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23]
 gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23]
          Length = 545

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 153/435 (35%), Gaps = 83/435 (19%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++   G++ID DL+K   A   +   SL +    L+G + N +S +QL D L   + +P 
Sbjct: 101 RIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTGLE-NPNSVQQLKDWLAD-MGYPV 158

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
            +  K    +  A +       D  + + +L  +++SK      + + +      +    
Sbjct: 159 SSLNKDSVSELLADEDL-----DEDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGL 213

Query: 702 FYSLASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKI 733
                +  TGR A     +QN+P                            +   L Q I
Sbjct: 214 LQFNGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAFEMMYSNVPDVLSQLI 273

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R AFI+         D+S IE R++A +A       VF +   I+   A+++F + IE+V
Sbjct: 274 RTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEV 333

Query: 794 SPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
              +R+  K    ++ Y      L    A ++ +  +E    +  +    P I       
Sbjct: 334 DKNLRQKGKVSELALGYNGGVNALIAMGALEMGLKENELQGIVDAWRKASPAITSLWRGV 393

Query: 850 KNFVR------------------------------------QNGYVETIFGRRIHYDEIN 873
           +   +                                    +   V   +G +I Y+ + 
Sbjct: 394 EKHAKLAISTRKSQKYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQICYEGVT 453

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
                 +       +   +Q  A D    ++    + +ED  + T  ++ +HDE + EV 
Sbjct: 454 DKGWRKQYTYGGKLVENIVQAIARDCLAISL----RRIEDTGIDT--VMHVHDEAITEVQ 507

Query: 934 EEE--ITTASQIIVH 946
           E E  +   + I+  
Sbjct: 508 ESESSVDKLNAILAE 522


>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1419

 Score =  144 bits (362), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 121/301 (40%), Gaps = 25/301 (8%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT--KKLISAD 749
            I  R  RVH    + +T T R  S  P+ QNIP   D    +RR F+S      + +  D
Sbjct: 1064 ILHRDGRVHQHIDMTATTTSRTVSAYPSCQNIPK--DDKSSVRRLFVSRFGSQGRCVEVD 1121

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----------QMRR 799
            YSQ+E+ +LA +     L     + +D H   AA   G+  +++            ++RR
Sbjct: 1122 YSQLEIVVLAILCNDANLTHDLNHGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRR 1181

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ--NG 857
             AK  +F  +YG     L     IP  +    I+R    +PGI ++    ++   +  N 
Sbjct: 1182 TAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEAYPGIAQFHRTIRSVALRPNNP 1241

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL- 916
             + T F   +      S ++    +N     N PIQG  A++ +  +  + +        
Sbjct: 1242 GLPTSFIAEMPTGLRMSLRTRDVVLNLPPIKNYPIQGYGAELAQMMLGRLFRHFMRRDFY 1301

Query: 917  --ATKMLLQIHDELVFEVP----EEEITTASQII--VHSMEKACLPKINLRVPLKVNIKV 968
                 ++  +HD +  +       E +T   +I+   H       P + + VPL+V+   
Sbjct: 1302 KNRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSAHEYVPKVFPGVKISVPLQVSASC 1361

Query: 969  S 969
             
Sbjct: 1362 G 1362


>gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A]
 gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A]
          Length = 653

 Score =  144 bits (362), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 108/674 (16%), Positives = 212/674 (31%), Gaps = 136/674 (20%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   +  I T + +         A   ++ +D     +        V     +   N   
Sbjct: 1   MKYMNIDIETYSSNDISK---CGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPF 57

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIML--------MSY- 494
                  K    +    K   N  ++++ L ++    +    +   M+         S  
Sbjct: 58  HADYETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLD 117

Query: 495 ----VLD----SGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIP-IDKISDSQVQEHAI 543
               VL+      ++  ++     ++ S   K   +   R  ++P  D     Q  ++ +
Sbjct: 118 KVGEVLNLQNQKDKAGKNL----IRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCV 173

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            +  V + +   ++    V K    Y  LD+        +   GI++ + L+   +    
Sbjct: 174 RDVEVEMSIATKIKD-FPVTKEEQKYWSLDQ-------HINDRGIKLSKSLMLGANELDK 225

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            +   L +    ++G + N +SP QL   L  +              K T Q+  +   G
Sbjct: 226 ISKAELLKQATKITGLE-NPNSPSQLLKWLNEEQGLDIP-----NLQKKTVQEYLKYATG 279

Query: 664 DNPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
                K +LE R Q+SK      + + + +    +RV   +      TGR A     LQN
Sbjct: 280 K---AKQMLEIRLQMSKTSVKKYNKMHDMMCGD-ERVRGLFQFYGAGTGRWAGRGVQLQN 335

Query: 723 -------------------------------IPIKTDLGQKIRRAFISPPTKKLISADYS 751
                                          I  +  L Q +R  F +     L  +D+S
Sbjct: 336 LTKHYISDTELNIARDFIKEQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFS 395

Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSII 809
            IE R++A  AK      VF     I+   AA++FGV ++ +     +R+  K    ++ 
Sbjct: 396 AIEARVIAWYAKEQWRLDVFNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALG 455

Query: 810 YGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865
           Y   P  L    A  + I  SE    +  +    P I  + +  ++   +   V T    
Sbjct: 456 YQGGPGALKAMGALDMGIDESELQGLVDSWRKANPNIVAFWKGCQDAAIET--VRTRQTH 513

Query: 866 --------------RIHYDEINS--------------------------PKSSIRNINER 885
                          I      S                           K +       
Sbjct: 514 LTHGLRFYMKKGFLMIELPSGRSLAYPKARVGENSWGSPVVEFMGLDLNRKWTKLKTYGG 573

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
             +   +Q +A D+   +M  +  +         ++  +HDE++ E+P+       + I 
Sbjct: 574 KLVENIVQATARDLLAISMYRIEHA------GFSIVGHVHDEVIVEIPDGSGGL--KAIE 625

Query: 946 HSMEKACLPKINLR 959
           + M K       L+
Sbjct: 626 NIMSKPVKWAEGLK 639


>gi|196009946|ref|XP_002114838.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
 gi|190582900|gb|EDV22972.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
          Length = 628

 Score =  144 bits (362), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 95/420 (22%), Positives = 154/420 (36%), Gaps = 123/420 (29%)

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD----------------LSGEKFNLS 624
           + ++IT I+ID +LL+         L +LE+  +                 +SG  F+L 
Sbjct: 300 AVLDITPIRIDTELLRDYQPIFEAKLEALEKKAHQVYCIIFIKRLRQSILQISGYSFSLQ 359

Query: 625 SPKQLGDILFTKLKFPSGAK------TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           SPKQ+  ILF KLK     K      TK  Q  +T+ ++                   L+
Sbjct: 360 SPKQIETILFEKLKLDQVLKLNLVLKTKKKQSLSTSDEV-------------------LN 400

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
           KIKST  D +   + K  Q +           G +   +   +N           R   I
Sbjct: 401 KIKSTSIDGILRLMKKNMQAIPKAMI----DFGGIEDTKIFGENENETYKGSYSPRDMII 456

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS--LDIHRMVAAEIFGVNIEKVSPQ 796
           +     L+S D+  IELR+LAH +  + L Q+F     ++I+  +A   F  NI+ +S  
Sbjct: 457 TKKNYSLVSVDFQAIELRLLAHFSNDSMLLQIFNEHPTINIYTWLATFWFNKNIDDISQA 516

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
               AK I +SI+YGI                         +FP + +Y +       + 
Sbjct: 517 EFDQAKEICYSILYGIV------------------------KFPAVAKYKQNLIRRCHE- 551

Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
                                               QGSAAD+ +  +I +   L D   
Sbjct: 552 ------------------------------------QGSAADLYKLRLIELFAILTDEAF 575

Query: 917 A--TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP-KINLRVPLKVNIKVSNNWQ 973
              +++       +    P  E+      + + ME   +  +I L VP+KV+IKV  +W 
Sbjct: 576 KSVSRIN------IFATCPRLEV------LYNVMESPNIGNEIRLTVPMKVSIKVGESWG 623


>gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 652

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 161/458 (35%), Gaps = 89/458 (19%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++   G+++D  L++Q      +    L+    +L+G   N +S  QL   L  +     
Sbjct: 200 KINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTGLD-NPNSTTQLTVWLKKQ----- 253

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
           G     G  K     L     GD  + + +   +++SK  +   +++   +    +    
Sbjct: 254 GLTVDNGLGKDYIPGLLDQAKGDETVTRMLELRKEMSKTSTKKYEAMERAMCSDDRARGL 313

Query: 702 FYSLASTMTGRLASLEPNLQNIPI----------------------------KTDLGQKI 733
                +  T R A     +QN+P                                L Q I
Sbjct: 314 LQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEAIELLFNSPPFVLSQLI 373

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R AFI     + I +D+S IE R++A +A  +   +VF++   I+   A+ +F V IE++
Sbjct: 374 RTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKIYEASASHMFHVPIEEI 433

Query: 794 SP--QMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
           +    +R+  K    ++ YG S   L    A ++ +   E  D +  + +  P I +   
Sbjct: 434 TKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGLDADELPDLVTAWRNSNPKIVKLWW 493

Query: 848 KTKNFV----RQNGYVETIFGRRIHY-------------------DEINSPKS------- 877
                     R++  V   +G    Y                    +I   K        
Sbjct: 494 DVDKAAMTAVREHMPVRIQYGITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPALTY 553

Query: 878 ----SIRNINERAAINAP------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
                I+   ER     P      +Q  A D     M+     L+D     +M   +HDE
Sbjct: 554 EGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLR----LDDAGYDIRM--HVHDE 607

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           ++ +VP  +    +Q +   M +       L  PL+ +
Sbjct: 608 VILDVPNTDTDALAQ-VNEIMSQPIDWAPGL--PLRAD 642


>gi|258655373|ref|YP_003204529.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
 gi|258558598|gb|ACV81540.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
          Length = 550

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 129/373 (34%), Gaps = 61/373 (16%)

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L +L + I    G   N  S   +    F ++ F              +     I   D+
Sbjct: 202 LAALADEISQAFGFPVNPDSAVDVRAA-FRRVGFDIE-----------STRSWVIKAIDH 249

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P ++ +L +++L ++ +    +       R  R H  Y   + ++GR A+       IP 
Sbjct: 250 PAVRPVLAYKELVRLHTANGWAWLEQWV-RGNRFHAEYLSGAVVSGRWATRGGGALQIPR 308

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
                  +R+A ++ P  +LI AD +Q+E R+LA I+    L Q      D++  +AA+ 
Sbjct: 309 ------VLRQAVVADPGYRLIVADAAQLEPRVLAAISADLVL-QAISAEDDLYAGLAADG 361

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FG N        R  AK      +YG               E    +     R+P    Y
Sbjct: 362 FGGN--------RAAAKVAMLGAMYGQ-----------TTGEGGRLVSTLRARYPQAMGY 402

Query: 846 IEKTKNFVRQNGYVETIFGRRIH-----------------YDEINSPKSSIRNINERAAI 888
           ++       +   V ++ GR                         +    +     R   
Sbjct: 403 VDGAARAGERGEVVHSVLGRACPPPGTSWEAVRIGRQQDATPAERTLADRLAGDRGRFTR 462

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N  +Q SAAD     +  +  SL +     +++   HDEL+   PE      + +I    
Sbjct: 463 NFVVQASAADWAAVWLAGLRTSLTEVA-GAELVFFQHDELIVHAPEPVAEPVAGLI---- 517

Query: 949 EKACLPKINLRVP 961
           E A      L  P
Sbjct: 518 EDAADAARRLVFP 530


>gi|281306676|ref|YP_003345482.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
 gi|271277981|emb|CBH51587.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
          Length = 789

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 133/355 (37%), Gaps = 59/355 (16%)

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ- 731
           E+ +   IK T       +I   +  +H   ++A+T+T RL+S +PNLQN+P   +    
Sbjct: 429 EYNKDGSIKKTKGM--LQYIGPDSI-IHHSLNVAATITARLSSSDPNLQNLPRSDEDDDG 485

Query: 732 ----KIRRAFISPPT--KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM-VAA- 783
               +++  F S       +I  DY+ +E+ +LA ++    L +  +N  D+H + +AA 
Sbjct: 486 VAKSRVKEMFTSRFGDDGVIIEVDYTALEVVMLAALSGDQALLKHLQNGTDMHCLRLAAK 545

Query: 784 ------EIFGVNIEKVSPQ------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
                 EI  +  +K  P+       R   K  +F+  YG S   +A    +    A ++
Sbjct: 546 LKRPYEEILAIAKDKHHPEHNSIKQQRTDIKPPSFAAQYGASASGIAFATGVSLEYATEF 605

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR------------------------- 866
           +      FP    + +  +  V + G + T   R                          
Sbjct: 606 LATEARLFPRAIAFRDVVRAEVERTGALPTGLMREQDDAGNFRVYRRGYYQADGGTCYSF 665

Query: 867 IHYDEINS-PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL---ATKMLL 922
             +D  ++  +  +         N   QG +  +   +   V + L  H +      M+ 
Sbjct: 666 RQFDVWDAEARKRVMGFKPTQIANYWCQGESGYLMTLSAGRVMRWLIQHPMFMSKIFMIN 725

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLP-----KINLR-VPLKVNIKVSNN 971
            +HD L F+V ++ +   +      ME A +        N+  VP     +   +
Sbjct: 726 NVHDALYFDVHKDYLKEVAAAAKAIMEDAPIYMSRELGYNISHVPFPAAAEAGPS 780


>gi|326522204|dbj|BAK04230.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 350

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 15/228 (6%)

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              +FD      +R  + P YKA+R     +       V    +   +P +++ G+EADD
Sbjct: 118 VVAVFDGAGGNDYRRRLLPSYKAHR--TRGVGTGADSRVVDVLRECNVPIVQVDGYEADD 175

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP 175
           ++AT T    ++G+ V I S DKD  QL+S    L   +    +     + H + ++   
Sbjct: 176 VVATLTEQVLQKGYRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCD 235

Query: 176 PEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENIL--INASRIKQKKR 229
           P   + L+   GD  D +PGI    PG G KTA  LL ++G+LEN+L       + ++  
Sbjct: 236 PTVDLSLRCFMGDEADGVPGIQHLAPGFGRKTAVKLLNKHGSLENLLKTAAVRTVGKEYA 295

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISF 275
           ++ ++++A+  R + +++ L+ DV + + +  L   D   +   L  F
Sbjct: 296 QDVLVKHADYLRKNYEVLSLKRDVNVQLDVRWLSARDTCNDTSVLSDF 343


>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1430

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 124/301 (41%), Gaps = 25/301 (8%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT--KKLISAD 749
            I  R  RVH    + +T T R  S  P+ QNIP   D    +RR F+S      + +  D
Sbjct: 1064 ILHRDGRVHQHIDMTATTTSRTVSAYPSCQNIPK--DDKSSVRRLFVSRFGSKGRCVEVD 1121

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----------QMRR 799
            YSQ+E+ +LA +     L +   + +D H   AA   G+  +++            ++R+
Sbjct: 1122 YSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRK 1181

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ--NG 857
             AK  +F  +YG     L     IP  +    I+R    +PGI ++    ++   +  N 
Sbjct: 1182 TAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNP 1241

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL- 916
             + T F   +      S ++    +N     N PIQG  A++ +  +  +++        
Sbjct: 1242 GLPTSFIAEMPTGLRMSLRTRDVVLNLPPIKNYPIQGYGAELAQMMLGRLYRHFVRRDFY 1301

Query: 917  --ATKMLLQIHDELVFEVP----EEEITTASQII--VHSMEKACLPKINLRVPLKVNIKV 968
                 ++  +HD +  +       E +T   +I+  VH       P + + VPL+V+   
Sbjct: 1302 EDRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSVHEYVPKVFPGVKISVPLQVSASC 1361

Query: 969  S 969
             
Sbjct: 1362 G 1362


>gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
 gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
          Length = 656

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 100/608 (16%), Positives = 201/608 (33%), Gaps = 125/608 (20%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIA 509
           +L +   + + +K  +N  ++   L+  G    +  +   M  ++ L  G ++  + +  
Sbjct: 58  WLMQALADPNVIKHAYNAAFEWYCLNCAGYETPIEQWRCTM--AHGLYCGYTA-GLDATG 114

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL---WLLLRP-------- 558
           +       K+ L + K+ I    +     + +     N        W L +         
Sbjct: 115 KAIGLPQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVT 174

Query: 559 KLIVEKLLHVY----ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           +  + K L ++    E      +DV+  M   G+++D DL++        +   L +   
Sbjct: 175 EREILKRLDLFPMPEEEEHLWQMDVL--MNAYGVRVDTDLIEGALYIDQISTQRLTDEAI 232

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP--IIKNIL 672
            L+G + N +S  QL   L             T         + ++  G NP  + + + 
Sbjct: 233 SLTGLQ-NPNSAAQLLQWLRD---------NGTEADNLQKATVAELLGGINPNKVRRMLE 282

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-------- 724
             +QL K       ++     +  +         +  TGR A     +QN+P        
Sbjct: 283 IRQQLGKTSIKKYVAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLD 342

Query: 725 --------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
                               +   L Q IR AFI     K + AD+S IE R++A +A  
Sbjct: 343 YARNLVKAKNYDGVRILYGNVPDTLSQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGE 402

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSP-----QMRRHAKTINFSIIYGISPFRL-- 817
             + +VF     I+   A+++FGV +E+++       +R+  K    ++ Y      L  
Sbjct: 403 QWVNEVFATHGKIYEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIA 462

Query: 818 --ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK-------NFVRQNG----------- 857
             A Q+ +   E  D ++R+    P I       +          +  G           
Sbjct: 463 MGALQMGLTEEELPDIVQRWRQANPRIKGLWYAIENAALAVMETAQPQGINGLIFALEGD 522

Query: 858 --------YVETIFGRRIHYDE-------------------INSPKSSIRNINERAAINA 890
                    V    GR++ Y +                     + K  + +      +  
Sbjct: 523 IIYGQSFLTVRLPSGRKLFYPKPFLKENRFEKMAVHYYTVGQQTRKWEVTSTYGGKMVEN 582

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
            +Q  A D     +    + +    L    +  +HDE++ + P   + T  + I   M +
Sbjct: 583 IVQAIARDCLAVTL----ERIASKGLQV--VFHVHDEVIIDAP---METTVEEICDLMAE 633

Query: 951 ACLPKINL 958
                  L
Sbjct: 634 PIPWAPGL 641


>gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii]
 gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 259

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 85/195 (43%), Gaps = 25/195 (12%)

Query: 724 PIKTDLGQKIRRAFISP--PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781
           P       K+R+AF +       L+ ADY Q+ELR+LAH+     + + F    D H   
Sbjct: 23  PALEKDRYKVRQAFTADVAAGHTLVVADYGQLELRLLAHMTDCKSMLEAFVLGGDFHSRT 82

Query: 782 AAEIFGVNIEKVSPQ-----------------------MRRHAKTINFSIIYGISPFRLA 818
           A  ++    + +                           RR AK +NFSI YG +   LA
Sbjct: 83  AVGMYDHIKDAIRDNKVLLEWDGEGESPLPLVKDLYASERRKAKVLNFSIAYGKTAHGLA 142

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878
              +  + EA   + +++     + ++ EKTK   RQ G V T+ GR      IN+P   
Sbjct: 143 ADFKTSKEEAQATVDKWYADRFEVRQWQEKTKEGARQEGKVRTLLGRTRPLPGINAPDFK 202

Query: 879 IRNINERAAINAPIQ 893
            +  +ERAAIN PIQ
Sbjct: 203 SKGHSERAAINTPIQ 217


>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1429

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 124/301 (41%), Gaps = 25/301 (8%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT--KKLISAD 749
            I  R  RVH    + +T T R  S  P+ QNIP   D    +RR F+S      + +  D
Sbjct: 1063 ILHRDGRVHQHIDMTATTTSRTVSAYPSCQNIPK--DDKSSVRRLFVSRFGSKGRCVEVD 1120

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----------QMRR 799
            YSQ+E+ +LA +     L +   + +D H   AA   G+  +++            ++R+
Sbjct: 1121 YSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRK 1180

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ--NG 857
             AK  +F  +YG     L     IP  +    I+R    +PGI ++    ++   +  N 
Sbjct: 1181 TAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNP 1240

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL- 916
             + T F   +      S ++    +N     N PIQG  A++ +  +  +++        
Sbjct: 1241 GLPTSFIAEMPTGLRMSLRTRDVVLNLPPIKNYPIQGYGAELAQMMLGRLYRHFVRKDFY 1300

Query: 917  --ATKMLLQIHDELVFEVP----EEEITTASQII--VHSMEKACLPKINLRVPLKVNIKV 968
                 ++  +HD +  +       E +T   +I+  VH       P + + VPL+V+   
Sbjct: 1301 KDRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSVHEYVPKVFPGVKISVPLQVSASC 1360

Query: 969  S 969
             
Sbjct: 1361 G 1361


>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5]
 gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            infantum JPCM5]
          Length = 1430

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 124/301 (41%), Gaps = 25/301 (8%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT--KKLISAD 749
            I  R  RVH    + +T T R  S  P+ QNIP   D    +RR F+S      + +  D
Sbjct: 1064 ILHRDGRVHQHIDMTATTTSRTVSAYPSCQNIPK--DDKSSVRRLFVSRFGSKGRCVEVD 1121

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----------QMRR 799
            YSQ+E+ +LA +     L +   + +D H   AA   G+  +++            ++R+
Sbjct: 1122 YSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRK 1181

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ--NG 857
             AK  +F  +YG     L     IP  +    I+R    +PGI ++    ++   +  N 
Sbjct: 1182 TAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNP 1241

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL- 916
             + T F   +      S ++    +N     N PIQG  A++ +  +  +++        
Sbjct: 1242 GLPTSFIAEMPTGLRMSLRTRDVVLNLPPIKNYPIQGYGAELAQMMLGRLYRHFVRKDFY 1301

Query: 917  --ATKMLLQIHDELVFEVP----EEEITTASQII--VHSMEKACLPKINLRVPLKVNIKV 968
                 ++  +HD +  +       E +T   +I+  VH       P + + VPL+V+   
Sbjct: 1302 EDRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSVHEYVPKVFPGVKISVPLQVSASC 1361

Query: 969  S 969
             
Sbjct: 1362 G 1362


>gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31]
 gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31]
          Length = 656

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 110/619 (17%), Positives = 213/619 (34%), Gaps = 121/619 (19%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYV 495
           D      +  E+L  LK    +E  +K  +N  ++   L+  GI   +  +   M+  + 
Sbjct: 48  DLAQGEAIPGEVLDLLK----DETCIKYAYNAVFEWWCLNMAGIETPLEQWHCTMV--HG 101

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ---L 552
           L  G ++  +A+I         K+ L +  + I    I  +  + +     N+       
Sbjct: 102 LYCGYTA-GLAAIGNAMGLPQDKKKLTTGSALIRYFCIPCNPTKSNGNRTRNLPHHAPEK 160

Query: 553 WLLLRP--------KLIVEKLLHVYERLDKPM-IDVV-SQMEITGIQIDQDLLKQVSAEI 602
           W L +         ++ + + L  +   ++   + V+ + M   G+++D +L+       
Sbjct: 161 WELFKEYCIQDVVTEMEIGRRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYID 220

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           + +  +L E   D++    N +S  QL + L    +     +         A   + I+ 
Sbjct: 221 ALSRANLLEEARDITKLD-NPNSTSQLLNWLEEAGEEVENLQK--------ATVGKMIDT 271

Query: 663 GDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            D+   K +LE RQ LSK       ++   + K  +         +  TGR A     +Q
Sbjct: 272 LDDGKAKRVLEIRQELSKTSVKKYKAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQ 331

Query: 722 NIP----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQI 753
           N+P                            I   L Q IR AFI       + +D+S I
Sbjct: 332 NLPRNYIETLDVARDVIKKGDGELLEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAI 391

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-----KVSPQMRRHAKTINFSI 808
           E R++A +A      +VF+    I+   A+++FGV I      + +  +R   K    ++
Sbjct: 392 EARVIAWLAGEEWRMEVFKTHGKIYEASASQMFGVPINTIAKGEENYHLRAKGKVAELAL 451

Query: 809 IYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEY------------------I 846
            Y  S   L    A  + +   E  D + R+      I E                   I
Sbjct: 452 GYQGSVGALTAMGAADMGLTDEEMKDIVDRWRKSSKRIVELWYALENAAVEVLETGEPQI 511

Query: 847 EKTKNFVRQNGYV--------ETIFGRRIHYDEINSP-KSSIRNINERAAIN-------- 889
            K     ++  ++        E   GR++ Y +         +       IN        
Sbjct: 512 VKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFLKENQFGQMQMHYMGINQTTKKWEV 571

Query: 890 ----------APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE-EIT 938
                       +Q  A D     ++ V            ++  +HDE++ +VP+  E+ 
Sbjct: 572 IPTYGGKLTENIVQAIARDCLAETLLRVKAK------GWPIVFHVHDEIILDVPKSVELE 625

Query: 939 TASQIIVHSMEKACLPKIN 957
              + +   +  A    +N
Sbjct: 626 EVIKTMTEEISWAKGLILN 644


>gi|12323855|gb|AAG51896.1|AC023913_4 DNA polymerase type I, putative; 54894-56354 [Arabidopsis thaliana]
          Length = 343

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 18/234 (7%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP--LVRLATQAFGIPAIEIQGFEAD 118
            AVI        R E+ P YKA+R         + P   V    +   +P     G EAD
Sbjct: 113 IAVIDGEEGNQRRRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPV----GHEAD 168

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGI 174
           D++AT    A + G+   I S DKD  QL+S    +        +     ++H   ++  
Sbjct: 169 DVVATLMEQAVQRGYRAVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNC 228

Query: 175 PPEKMVCLQALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENILINAS--RIKQKK 228
            P+  +  + + GD +D +PG    +P  G KTA  L++++G+LE++L  A+   + +  
Sbjct: 229 DPQSDLSFRCIMGDEVDGVPGIQHMVPAFGRKTAMKLVRKHGSLESLLSAAAVRTVGRPY 288

Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALE 280
            +E + +YA+  R + +++ L  DV + I  E L+  D   +   L SF   L 
Sbjct: 289 AQEALTKYADYLRRNYQVLALNRDVRVQIQNEWLMERDTSNDSEVLSSFFSTLH 342


>gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain
            Friedlin]
 gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
            strain Friedlin]
          Length = 1429

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 122/301 (40%), Gaps = 25/301 (8%)

Query: 692  INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT--KKLISAD 749
            I  R  RVH    + +T T R  S  P+ QNIP   D    +RR F+S      + +  D
Sbjct: 1063 ILHRDGRVHQHIDMTATTTSRTVSAYPSCQNIPK--DDKSSVRRLFVSRFGSKGRCVEVD 1120

Query: 750  YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP----------QMRR 799
            YSQ+E+ +LA +     L     + +D H   AA   G+  +++            ++RR
Sbjct: 1121 YSQLEIVVLAILCNDANLTNDLNSGVDFHVKRAAFFSGLPYDEIYQGYKRNVPKYVKLRR 1180

Query: 800  HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ--NG 857
             AK  +F  +YG     L     IP  +    I+R    +PGI ++    ++   +  N 
Sbjct: 1181 TAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNP 1240

Query: 858  YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL- 916
             + T F   +      S ++    +N     N PIQG  A++ +  +  +++        
Sbjct: 1241 GLPTSFIAEMPTGLRMSLRTRDVVLNLPPIKNYPIQGYGAELAQMMLGRLYRHFVRKDFY 1300

Query: 917  --ATKMLLQIHDELVFEVP----EEEITTASQII--VHSMEKACLPKINLRVPLKVNIKV 968
                 ++  +HD +  +       E +    +I+  VH       P + + VPL+V+   
Sbjct: 1301 DDRAFLINFVHDSVWMDCHVDVLRECVRDTCRILGSVHEYVPKVFPGVKISVPLQVSASC 1360

Query: 969  S 969
             
Sbjct: 1361 G 1361


>gi|154337326|ref|XP_001564896.1| mitochondrial structure specific endonuclease I (SSE-1) [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134061934|emb|CAM38975.1| putative mitochondrial structure specific endonuclease I (SSE-1)
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 297

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 124/278 (44%), Gaps = 37/278 (13%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFC----NMLWKLLQNSRKESIA 58
           +E  + L+DG + ++R ++     +++  G P++ +  F       +     +     +A
Sbjct: 4   REKAIVLIDGPALVHRWYHRWSY-TKERYGTPID-VKQFAIKNARFMIATAHSFDPAHMA 61

Query: 59  SH----------------FAVIFDYPAVTFRNEIYPDYKANRPK---IPEMLLPQLPLVR 99
            H                  V FD+     R +IY  YKANR +    PE  L +    +
Sbjct: 62  QHLLSPQTEYAHTPKHNKIIVCFDHGDG-GRRQIYASYKANRSERATTPEFRLIERVAKK 120

Query: 100 LATQAFGIPAIEIQ---------GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP 150
           +         + +            EADD+IAT  +  ++      ++S D DL QLV  
Sbjct: 121 VFADEPRESLLVVPDCDAGLASLNAEADDMIATLAFFNQQSRRPTVVMSHDYDLYQLVDE 180

Query: 151 --TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
              +  YD   +  +    V+++ G+PP+ +   ++L GDS DNIPG+ GIG   A  LL
Sbjct: 181 ARKSYHYDIRTKHLVSERSVMERVGVPPKLVRDFKSLAGDSSDNIPGVNGIGKMRACNLL 240

Query: 209 QEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           ++YG+L+ IL    + +     E + E A+ A LSR+L
Sbjct: 241 KKYGDLDGILFKGVKSETGHLGELLSEGAKMALLSRQL 278


>gi|32442303|gb|AAP82222.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 146/414 (35%), Gaps = 58/414 (14%)

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS---RKSSIPIDKISDS-------- 536
           D +++S ++ S    +D   I +       + ++ S   +   + +  + D         
Sbjct: 1   DTLVLSRLVWSDLKVNDFRYIEKN--PDFPRNLIGSHSLKAWGLRLSNLKDDYDGGWDTW 58

Query: 537 --QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
              +Q++  ++      L+  +  K      +    RL+     V+ + E  G   D + 
Sbjct: 59  SKDMQDYCEQDCQANWTLYKKIMSKRPSADSV----RLEHEFAAVIRKQERIGFNFDTNK 114

Query: 595 LKQVSAEISKNLLSLEENI------------------------------YDLSGEKFNLS 624
             Q+ A++      LE  +                              Y +    FN +
Sbjct: 115 ANQLLAKLQGRQAELEAKLQTAFPPWEIKTPFTPKVNNKSRGYVKGVLTYKVKEIVFNPA 174

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S   + D L     +     T  G+ K     L+ ++  +  I+   L   +   I +T 
Sbjct: 175 SRDHIADRLQKLRCWKPELMTDQGKPKVDEAVLKTLDYPEASILNEDLLINKRIGILATG 234

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            +     +  +  ++H   +     TGR    +PN+   P +    G++ R  F +P   
Sbjct: 235 VNGWLKMV--KGGKIHGRVNTNGAATGRCTHSKPNVAQTPSVGAAYGRECRELFHAPEGY 292

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            L+ AD S +ELR LAH          F++      +V  +I  +N +      R +AKT
Sbjct: 293 SLVGADLSGLELRCLAHY------MARFDSGSYADVVVNGDIHTLNQKSAGLPTRNNAKT 346

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
             +  +YG  P ++ + +     E    I ++    P I          V++NG
Sbjct: 347 FIYGFLYGAGPAKIGSIVDGSEKEGRKLISKFMKATPAIKLLRTAVSEVVKKNG 400


>gi|221066661|ref|ZP_03542766.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
 gi|220711684|gb|EED67052.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
          Length = 766

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 98/460 (21%), Positives = 167/460 (36%), Gaps = 90/460 (19%)

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF----- 634
           + Q+   G+ +D D L+ +  + +  +      + +       + S  ++   L      
Sbjct: 329 LVQISCNGMPVDIDRLESIRCDAAAVVAKAASTVVEH------IPSLYEIQARLSAMSGG 382

Query: 635 --TKLKFPSGAKTKTGQWKTTAQDL-------EQINCGDNPIIKNILEWRQLSKIKSTYA 685
              +++   G   ++   +  A D        + ++      +  I  WR L   + T A
Sbjct: 383 ATDEIRLAVGEYARSTGVELDASDNGLPSISLKSLSNKGAIALPGIAAWRDLCDARRTLA 442

Query: 686 --DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
             D L   ++   +    F     T+TGRL +  P    +  +      +R A  +P   
Sbjct: 443 SCDDLIASVSPNGRLHPLF--GYDTVTGRLTAKRPASMAMDQR------LRSAVTAPEGS 494

Query: 744 KLISADYSQIELRILAHIAKITP--------LYQVFENSLDIHRMV-------------- 781
            +ISADYSQIELRI A  A+           L   F   +D H                 
Sbjct: 495 VIISADYSQIELRIAACFAEKMRAGTGLPGMLATAFRTGVDPHLTTALQSVRQRGDIDFT 554

Query: 782 ---AAEIFGVNIEKVSPQ------MRRHAKTINFSIIYGISP------FRLATQLRIPRS 826
              AA I G+  E+           R  AK  NF ++YG+         RLA  L     
Sbjct: 555 GNAAAYIAGLCDEERCELKSRLFVERDTAKAQNFGLLYGMKDSSFWEYGRLAYGLTWTFE 614

Query: 827 EAADYIKRYFHRFPGIHEYIEKTK----NFVRQN-------GYVETIFGRRIHYDEINSP 875
           EA      +F  +P I    +  +       ++        G  +T   R +    ++  
Sbjct: 615 EAQAARDAWFKMYPEIALLHDSYQSTFSAAAKETLFLKAHDGVFQTTTSRVVSGATLSGR 674

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           K  +   +    ++   QG+ ADI   A+ S+     DH     ++  +HDELV  VPE 
Sbjct: 675 K--VTATSPFLLLSYACQGTGADIIISAIASM-----DHGTRRHLVNVVHDELVLCVPES 727

Query: 936 EITTASQIIVHSM---EKACLPKINLRVPLKVNIKVSNNW 972
                +  +  +M   E A   + N  +P  V+I V N+W
Sbjct: 728 CSQREAAEVRRAMLSAEDAVFAQYN--IPASVDITVGNSW 765


>gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis]
 gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 651

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 121/626 (19%), Positives = 211/626 (33%), Gaps = 128/626 (20%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL----VLH 477
           F V      ++V+       K  L ++IL  L     ++  +K   N  ++++     L 
Sbjct: 37  FAVSVDNGPVTVYD----FNKEKLPQDILEALV----DDRVIKWAFNASFERICLSNWLK 88

Query: 478 RYG--------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
           ++         +S   +   M+ S  L    S   + ++ +      R+     R   +P
Sbjct: 89  KHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSLEGVGTVLKLKDKKMREGADLIRYFCVP 148

Query: 530 IDKISDS----QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
                 +    +   H   N       +     +  VE  L + ERL    +      E 
Sbjct: 149 CKPTKVNGGRIRNFPHHAPNKWSTFIDYN----RRDVEVELAIKERLKNFPVPDFVWDEY 204

Query: 586 T--------GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637
                    GI ID D +K      S++   ++E +  L+  + N +S  Q+   L    
Sbjct: 205 HQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEELKALTRLE-NPNSVLQMIGWLREHG 263

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
                    T          E +   D    + +   +Q +K   +   ++ N + K  +
Sbjct: 264 --------VTTDSLDKKVVKELLKTADETTAQVLKLRQQAAKSSVSKYQAMMNCVCKDGR 315

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIP---------------------------IKTDLG 730
               F    +  TGR A     LQN+P                            +  L 
Sbjct: 316 ARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEARELFGTGDLEATEFLYDTQDTLS 375

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
           Q IR AF+    KK I  D+S IE R+L+H+A      +VFE   DI+ + A+++FGV +
Sbjct: 376 QLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVFEQGKDIYCISASQMFGVPV 435

Query: 791 EKV--SPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHE 844
           EK   + ++R+  K    +  YG S   L    A  + +   E    +  +    P I  
Sbjct: 436 EKYGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLKDKELRPLVDSWRQANPNIVL 495

Query: 845 YIEKTKNFV----RQNGYVETI----------------FGRRIHY------------DEI 872
           +       V    +Q+   ET                  GR++ Y            + I
Sbjct: 496 FWWDVDRAVKTAIKQHIQTETHGIQFEVNKGMLSITLPSGRKLAYVKPKIGENQFGGESI 555

Query: 873 NSPKSSIRNINERAAINAP------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
               +      ER     P      +Q  + DI   AM    K L++      ++  +HD
Sbjct: 556 TYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAM----KQLQEFN----IVGHVHD 607

Query: 927 ELVFEV----PEEEITTASQIIVHSM 948
           E++ E       +EI     I    M
Sbjct: 608 EVIIECGIDQSLDEIAYLMGIAPEWM 633


>gi|242059405|ref|XP_002458848.1| hypothetical protein SORBIDRAFT_03g041390 [Sorghum bicolor]
 gi|241930823|gb|EES03968.1| hypothetical protein SORBIDRAFT_03g041390 [Sorghum bicolor]
          Length = 350

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 15/228 (6%)

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              + D      +R  + P YKA+R +   +       V    +   +P + + G+EADD
Sbjct: 115 VVAVLDGEGGNEYRRRLLPSYKAHRAR--GVGTGADTRVVNVLRECNVPVVRVDGYEADD 172

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP 175
           ++AT T    ++G+ V I S DKD  QL+S    L   +    +     + H + ++   
Sbjct: 173 VVATLTEQVLQKGYRVVIASPDKDFKQLISDDVQLVMPIPEIGRWSFYTLRHYVAQYKCD 232

Query: 176 PEKMVCLQALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENILINAS--RIKQKKR 229
           P   + L+   GD  D +PG    +PG G KTA  LLQ++G+LEN+L  A+   + +   
Sbjct: 233 PTADLSLRCFMGDETDGVPGIQHLVPGFGRKTAVKLLQKHGSLENLLNTAATRTVGKDYA 292

Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISF 275
           ++ + ++A+  R + +++ L+ DV +      L   +   +   L  F
Sbjct: 293 QDALTKHADYLRKNYEVLSLKRDVSVQFDDNWLSTRNTSNDTNVLADF 340


>gi|32442285|gb|AAP82213.1| DNA polymerase [Podovirus GOM]
          Length = 409

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 158/424 (37%), Gaps = 61/424 (14%)

Query: 488 DIMLMSYVLDSGRS------------SH------DIASIAQKWLSYTRKEILKSRKSSIP 529
           D +++S + +  R              H      D  S + + ++Y R+++  + K    
Sbjct: 1   DTLVLSRLFNPTREGGHGLEGWGYRLRHKKIEFEDFESFSPEMMAYCRQDVSLNHKVYQH 60

Query: 530 IDKISDSQVQEHAIENSNVILQLWLL---------------LRPKL-----IVEKLLHVY 569
           + ++  +   + A+   + + ++                  L+ +L       EKL+H  
Sbjct: 61  LARVEAAGFSKDAVTLEHSVYRIMQAQRDRGFLLDEKHAMSLQAELNENLSQAEKLVHKT 120

Query: 570 ERLDKPMIDVVSQMEITG-------IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622
            R  +  + +V  M   G       I+ +   ++    E +K   +  E++     E FN
Sbjct: 121 FRPRETQMTLVPLMTKAGKVSKMAQIKGETKKVRLSDEEYAKASANPNEHLVRCDSEPFN 180

Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           L S KQ+G+ L     +     T TGQ     + L +I   D P    I E+  L K  +
Sbjct: 181 LGSRKQIGEYLME-FGWKPAKFTPTGQPIVDEKVLSKIK--DIPEAAVIAEYLMLQKRIA 237

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI-KTDLGQKIRRAFISPP 741
                          RV  F +    +TGR+    PN+  +P   +  G++ R+ +    
Sbjct: 238 QITSWFKEV--GDDGRVRGFVNTNGAVTGRMTHSHPNMAQVPSTGSPYGKECRQCWTVMD 295

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
             KL+  D S +ELR+LAH            N  DIH          N      + R  A
Sbjct: 296 GYKLVGIDASGLELRMLAHYMNDEGFTYELLNG-DIHTA--------NQMAAGLESRNQA 346

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
           KT  ++++YG    +L   +     +     + +F   P      ++     ++ GY++ 
Sbjct: 347 KTFIYALLYGAGDAKLGAVVGGNADDGGRLRQSFFDNLPAFKVLKDRVARAAKR-GYLKG 405

Query: 862 IFGR 865
           + GR
Sbjct: 406 LDGR 409


>gi|332800714|emb|CBY88554.1| hypothetical protein [Pantoea phage LIMEzero]
          Length = 814

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 126/390 (32%), Gaps = 68/390 (17%)

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA--------------DSLPNHI 692
           T  + T    LE +     P +  I    +  K   TY                 +   I
Sbjct: 398 TPVFSTAGDVLEALAARKIPGVVEIAARAKAQKDLGTYYLIEEEDEEGNVIGQSGMMQFI 457

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK--KLISADY 750
                 VH   ++ ST T RL+S  PN QN+P K     K+++ F S      K+  ADY
Sbjct: 458 QPDGV-VHHSINMTSTETTRLSSSRPNSQNLPRKGT--SKVKQMFTSRFGGEGKICEADY 514

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV---------------SP 795
           S +E+       K   L Q   +  D+H M  ++    + E V                 
Sbjct: 515 SALEVVGQCGFTKDKNLTQALLDGTDMHCMRLSQQLNEDYESVLLKAKKDESHPDHKRYD 574

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT------ 849
           +MR   K   FS  YG +   +A        EA  +I      FP + ++ ++       
Sbjct: 575 EMRTAIKPKAFSYQYGATAMGIAYSTGCSVEEAQAFIDSEKALFPDVEKWYDEVITPIVE 634

Query: 850 --------KNFVRQNGYVE-----------TIFGRRIHYDEINSPKSSIRNINERAAINA 890
                   K       +V            T +  R H       ++++         N 
Sbjct: 635 RNGKSNRFKEQDENGRWVSYCRGHWQSPGGTCYSFRQHEKWDRDARAAVMMYKPTQMRNY 694

Query: 891 PIQGSAADITRRAMISVHKSLEDHKL---ATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           PIQG  A   +     + + L  +         + Q+HD   F+   +        +   
Sbjct: 695 PIQGETAFWVQGIGGLLFRWLLANDFFDGKAVPINQVHDAFYFDCAPDCPHEFFVGLKAI 754

Query: 948 ME------KACLPKINLRVPLKVNIKVSNN 971
           ME          P+ NL VP    ++V  +
Sbjct: 755 MECIPEYYNHVWPEYNLHVPFPAEVEVGPS 784


>gi|145595499|ref|YP_001159796.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
 gi|145304836|gb|ABP55418.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
          Length = 592

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 115/334 (34%), Gaps = 56/334 (16%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
             +   D+P    +LE+++L +I + +  +       R  R    Y  A  ++GR A+  
Sbjct: 276 WVLRGVDHPAAPLVLEYKELYRIWTAHGWAWQEAWV-RDGRFRPEYVPAGVVSGRWATRG 334

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
                IP        IRRA ++ P    + AD  Q+E RILA ++  T L        D+
Sbjct: 335 GGALQIPK------VIRRAVVADPGWTFVVADAGQLEPRILAAVSGDTRLAAAARAG-DL 387

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           +  +A + FG +        R  AK      +YG +              AA  ++    
Sbjct: 388 YAALADDAFGGD--------RARAKVALLGAMYGQTGGS-----------AAPALEVLRR 428

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN-------------SPKSSIRNINE 884
            +P    Y+E           V +  GR      ++              P +  R    
Sbjct: 429 NYPAAFGYVETAARSGEAGELVRSWLGRTCPPGSVDRVGEDTVPAGGEEGPSARARARG- 487

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLED------------HKLATKMLLQIHDELVFEV 932
           R   N  IQ +AA+     + ++   L                   +++   HDE++   
Sbjct: 488 RFTRNFVIQATAAEWAATLLATLRGELAGSDAELVGSDVGLAGSDAELVFFQHDEVIVHC 547

Query: 933 PEEEITTASQIIVHSMEKA---CLPKINLRVPLK 963
             E     +  +    E+A      + ++R PL 
Sbjct: 548 RTERAAAVAAAVTRCGERASALLFGRTSVRFPLD 581


>gi|224135903|ref|XP_002327332.1| predicted protein [Populus trichocarpa]
 gi|222835702|gb|EEE74137.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 20/243 (8%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKI------PEML-LPQLPLVRLATQAFGIPAIEIQ 113
            AV+        R ++ P YKA+R K       P+     +  +V        +P ++I+
Sbjct: 113 IAVLDGDGGSEHRRQLLPSYKAHRRKFSRKSSAPQKYPAERSHVVMDVLTKCNVPVVKIE 172

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVI 169
           G EADD++AT      +    V I S DKD  QL+S    +   +    +     ++H I
Sbjct: 173 GHEADDVVATLAGQVLQNRHKVVIASPDKDFKQLISEDVQIVLPIAELNRWSFYTLKHYI 232

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--R 223
            ++   P   +  + + GD +D +PGI    PG G KTA  LL+++G+L+N+L  A+   
Sbjct: 233 SQYNCDPCSDLSFRCIMGDEVDGVPGIQNVAPGFGRKTALKLLKKHGSLQNLLDAAAVRT 292

Query: 224 IKQKKRRENILEYAETARLSRK-LVMLRTDVPITIPLEHLILEDCNGPR--LISFLKALE 280
           + +K  ++ + ++++  R + + L + R DV + +  E L+  D       L +F K LE
Sbjct: 293 VGKKYAQDALTKHSDYLRRNYEILALRRWDVDVQLKEEWLVERDRCNDSIILSNFFKLLE 352

Query: 281 FTK 283
            +K
Sbjct: 353 QSK 355


>gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes
           MGAS315]
 gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage
           315.6]
 gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 640

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 86/599 (14%), Positives = 193/599 (32%), Gaps = 117/599 (19%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED------IMLMS----------- 493
             +K    ++   K   N +++++ L RY + +  + D       M+++           
Sbjct: 55  EDIKDMLFDDKVRKHAFNAQFERVCLSRY-LGLPYYLDPCQWQCTMVLAQELGLPSSLEK 113

Query: 494 ---YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ---EHAIENSN 547
              Y+  +        ++  ++ S   K    +   +  + + +  + Q   ++ I++  
Sbjct: 114 CALYLKLAQEKDTSGKNLI-RYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVV 172

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           V + +   L    + ++    Y            ++   G+ +D++L+          + 
Sbjct: 173 VEMAIAEKLESVPVHDREWDYY--------ACDQRINDRGVALDKELVASALYCKDVKME 224

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           SL   +  L+G   N +S  QL   L           + +G  K   +   +   G+   
Sbjct: 225 SLSGELKALTGLD-NPNSRTQLLPWLKEH------GYSASGLTKADVEKELKTAEGELKR 277

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK- 726
           +  +     +S +K   A       + R   +  FY   ++ TGR A     +QN+    
Sbjct: 278 VLELKLQTAMSSLKKYEAMERARCSDGRVHGLLQFY--GASRTGRWAGRVVQVQNLARNY 335

Query: 727 ---------------------------TDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                                        L Q +R A ++        +D+S IE R++A
Sbjct: 336 IKDLDDAREYVKKRDIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIA 395

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
             A       VF     I+   A+++FG+ IE++  ++R+  K    ++ Y   P  L  
Sbjct: 396 WFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQ 455

Query: 820 ----QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----RQNGYVETIFGRRIH--- 868
                + +   E    +  +      I ++ +  +       +    V     R  +   
Sbjct: 456 MGALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPVRLGKLRFRYRKG 515

Query: 869 YDEINSPKSSIRNINE------------------------------RAAINAPIQGSAAD 898
           +  I  P                                          +   +Q +A D
Sbjct: 516 FLFITLPSGRNLAYARAKVEPGDYGDKIVYEGQGDKAYFTAQETYGGKLVENIVQATARD 575

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I   A++ +  +         ++  +HDE + E     I   + ++  + E A    +N
Sbjct: 576 ILAEALLRIEAA------GHGVVFHVHDEAIIEGSGLTIEEVNDLMAQAPEWAEGLPLN 628


>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927]
 gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            brucei]
 gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
            gambiense DAL972]
          Length = 1404

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 103/271 (38%), Gaps = 23/271 (8%)

Query: 722  NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
               I  D    +R  F+S   +K   +  DYSQ+E+ ++A + +   L       +D H 
Sbjct: 1088 CQNIPKDDKSSLRHLFVSRFGEKGRCVEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHV 1147

Query: 780  MVAAEIFGVNIEKVSP----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
              A+   G++ +++            ++R+ AKT +F  +YG     L     IP  +  
Sbjct: 1148 KRASFFSGISYDEIYNGYKRGEAKFLKLRKVAKTFSFQRLYGAGVPLLHKTTGIPVQDLQ 1207

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFVRQ--NGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            + I+R    +PGI  +    +    +  N  + T F   +        K+    +N    
Sbjct: 1208 ECIRREEEEYPGISRFHRLARTVALRANNPGLPTHFIVELPTGLRVCYKTRDVVLNLPPV 1267

Query: 888  INAPIQGSAADITRRAMISVHKSLEDH---KLATKMLLQIHDELVFEVPEEEITTASQII 944
             N PIQ   A++ +  +  V +             M+  +HD L  +     +       
Sbjct: 1268 KNYPIQSFGAELAQMMIGRVFRQFVRKSFYGQKAFMINFVHDSLWLDCHMSVLEECVHET 1327

Query: 945  VHSMEKA------CLPKINLRVPLKVNIKVS 969
               ME+         P + L+VPLKV++   
Sbjct: 1328 RTIMEEVDTYVAKTFPGVKLKVPLKVSVDCG 1358



 Score = 44.6 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 76/194 (39%), Gaps = 32/194 (16%)

Query: 465 IGHNIKYDKLVLHRYGISMRGF-------EDIMLMSYVLDSGR---SSHDIASIAQKWLS 514
           + H++K   ++L      +R F          M   Y+LD+ R    S+ +  +A K+  
Sbjct: 505 VCHDVK-HFVLLIWDDPELRRFLKRGGRVWCTMFAEYLLDAQRCQSGSNSLHDVAMKYGI 563

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYE 570
            T +  +      +    +  + +Q + +   + I +   + + +L       +L+ V  
Sbjct: 564 LTPQSSV----LGLSTPDLPIAFIQHYLVAAVDAISR---VFQEQLKKACGNSQLICVAH 616

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK--------FN 622
           R     +  ++ +E  GI ID       +  I   LL++++++   + ++        F+
Sbjct: 617 R--MDSLLAMASIEKAGIHIDSKEATLQAQAIRNRLLAIDKSLSLYAPDEIPLDMQRFFD 674

Query: 623 LSSPKQLGDILFTK 636
            +S + L    F  
Sbjct: 675 WTSLQHLQAYFFGG 688


>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
          Length = 1404

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 103/271 (38%), Gaps = 23/271 (8%)

Query: 722  NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
               I  D    +R  F+S   +K   +  DYSQ+E+ ++A + +   L       +D H 
Sbjct: 1088 CQNIPKDDKSSLRHLFVSRFGEKGRCVEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHV 1147

Query: 780  MVAAEIFGVNIEKVSP----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
              A+   G++ +++            ++R+ AKT +F  +YG     L     IP  +  
Sbjct: 1148 KRASFFSGISYDEIYNGYKRGEAKFLKLRKVAKTFSFQRLYGAGVPLLHKTTGIPVQDLQ 1207

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFVRQ--NGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
            + I+R    +PGI  +    +    +  N  + T F   +        K+    +N    
Sbjct: 1208 ECIRREEEEYPGISRFHRLARTVALRANNPGLPTHFIVELPTGLRVCYKTRDVVLNLPPV 1267

Query: 888  INAPIQGSAADITRRAMISVHKSLEDH---KLATKMLLQIHDELVFEVPEEEITTASQII 944
             N PIQ   A++ +  +  V +             M+  +HD L  +     +       
Sbjct: 1268 KNYPIQSFGAELAQMMIGRVFRQFVRKSFYGQKAFMINFVHDSLWLDCHMSVLEECVHET 1327

Query: 945  VHSMEKA------CLPKINLRVPLKVNIKVS 969
               ME+         P + L+VPLKV++   
Sbjct: 1328 RTIMEEVDTYVAKTFPGVKLKVPLKVSVDCG 1358



 Score = 44.6 bits (104), Expect = 0.085,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 76/194 (39%), Gaps = 32/194 (16%)

Query: 465 IGHNIKYDKLVLHRYGISMRGF-------EDIMLMSYVLDSGR---SSHDIASIAQKWLS 514
           + H++K   ++L      +R F          M   Y+LD+ R    S+ +  +A K+  
Sbjct: 505 VCHDVK-HFVLLIWDDPELRRFLKRGGRVWCTMFAEYLLDAQRCQSGSNSLHDVAMKYGI 563

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYE 570
            T +  +      +    +  + +Q + +   + I +   + + +L       +L+ V  
Sbjct: 564 LTPQSSV----LGLSTPDLPIAFIQHYLVAAVDAISR---VFQEQLKKACGNSQLICVAH 616

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK--------FN 622
           R     +  ++ +E  GI ID       +  I   LL++++++   + ++        F+
Sbjct: 617 R--MDSLLAMASIEKAGIHIDSKEATLQAQAIRNRLLAIDKSLSLYAPDEIPLDMQRFFD 674

Query: 623 LSSPKQLGDILFTK 636
            +S + L    F  
Sbjct: 675 WTSLQHLQAYFFGG 688


>gi|148272793|ref|YP_001222354.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830723|emb|CAN01663.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 556

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 137/410 (33%), Gaps = 71/410 (17%)

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK----------NLLSLE 610
                L +    +     V ++M   G+  D  +   +  ++             LL L 
Sbjct: 147 AEPGRLRLLLAAESAGALVAAEMSADGLPWDTSVHDALLVDLLGGRPAHGGAPPALLRLA 206

Query: 611 ENIYD-LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
             + + L     N+ SP  +   L            +       +    ++   D+P+I 
Sbjct: 207 ARVREILRAPDLNVDSPPDVLRAL------------RRAGIDAASTRQWELQEIDHPVIA 254

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729
           ++LE ++LS++ +    +       R  R H  Y     +TGR A+       +P     
Sbjct: 255 SLLEHKRLSRLLTANGWTWMETWI-RDGRFHPEYVPGGVVTGRWAASGGGALQLPR---- 309

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
             +IR A  +    +L+ AD +Q+E R+LA +A+   +        D+++ +        
Sbjct: 310 --QIRSAVRADRGWRLVVADAAQLEPRVLAALAEDRAMADAGR-GTDLYQGL-------- 358

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
           ++      R HAK      +YG               E+   + R    +P    Y+E+ 
Sbjct: 359 VDAGVVDTRAHAKVAMLGAMYGA-----------TSGESGRLMPRLVRAYPRATGYVERA 407

Query: 850 KNFVRQNGYVETIFGRRIHYD------------------EINSPKSSIRNINERAAINAP 891
                    V T  GR                          +   +      R   N  
Sbjct: 408 ARAGESGAVVSTRLGRSSPPPGDAWVDVQQIGRAGEASSADAARARTSARDQGRFTRNFV 467

Query: 892 IQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEEEIT 938
           +QGSAA+     +  + + L   E       ++  +HDE++   P++ + 
Sbjct: 468 VQGSAAEWALCWLAGLRRRLAAMERPGSRPHLVFFLHDEVMVHAPDDRVD 517


>gi|307106798|gb|EFN55043.1| hypothetical protein CHLNCDRAFT_134898 [Chlorella variabilis]
          Length = 158

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 11/157 (7%)

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           + +   EAA   + +    PG+  ++EK     RQ GYVET+ GRR     IN     +R
Sbjct: 1   MGVTPKEAAKLKQEFLESMPGVAAFLEKVVEDCRQTGYVETLAGRRCPLPNINLQSWRLR 60

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEEEI 937
              ER A+N P+QGSAAD+ + AMI++ +SL   +  +    ++L IHDELV EV     
Sbjct: 61  GEAERKAVNTPMQGSAADVMKAAMIALGESLQIGQAGEGGAAIVLMIHDELVIEV----- 115

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              + I+   ME   + K++L VPL V + +  +W +
Sbjct: 116 ---AAIVRECMEVVPVRKLHLSVPLAVKMSMGRSWGD 149


>gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 470

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 166/463 (35%), Gaps = 96/463 (20%)

Query: 566 LHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
           + + ++L+   +         +   +   GI+IDQ L+       +       +   +L+
Sbjct: 1   MEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT 60

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
           G   N +SP QL D L  +     GAKT +    + AQ L+      + I+        L
Sbjct: 61  GLA-NPNSPLQLKDWLQQQ-----GAKTDSLSKASVAQLLQTTTGKVHQILALRQL---L 111

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP------------- 724
           SK       ++   + +  +         +  TGR A     +QN+P             
Sbjct: 112 SKSSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKL 171

Query: 725 ---------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
                          +   L Q IR AFI         AD+S +E R++A ++      +
Sbjct: 172 VKQGNVTALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQE 231

Query: 770 VFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL----ATQLRI 823
            F  + DI+   A+++FGV + K  ++ ++R+  K    ++ YG S   L    AT+L +
Sbjct: 232 AFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLVL 291

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ--------------------NGYVETIF 863
              E    ++ + +  P I ++        ++                      ++    
Sbjct: 292 TDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGMKFIYRSGCMFLRLRS 351

Query: 864 GRRIHYDE-----------------INSPKSSIRNINERAA-INAPIQGSAADITRRAMI 905
           GR + Y +                 IN+ K   R     A  +   +Q ++ D+   AM 
Sbjct: 352 GRYLCYPKPKIGTNRFGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMR 411

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEE-ITTASQIIVHS 947
            +  +         +++ IHDE V + P    + T  Q++   
Sbjct: 412 RLEAT------ENTVVMHIHDEAVIDAPSNRSLDTMVQLMTEV 448


>gi|32442297|gb|AAP82219.1| DNA polymerase [Podovirus GOM]
          Length = 397

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 141/411 (34%), Gaps = 70/411 (17%)

Query: 488 DIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D ++MS + +  R   H + +  ++         L   K            ++++ + + 
Sbjct: 1   DTLVMSSLSNPNREDGHSLRAWGER---------LGFSKGDHTDWTRLTPDMEKYCVRDV 51

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            V  +L+  L  +L    +  +   L+  +  + ++    G  +D     Q+ A + +  
Sbjct: 52  EVTEKLYQHLLKELDGFDVSSI--ELEHEVQRITARQVRLGWLLDLKYAHQLLALLKEKK 109

Query: 607 LSLEENIYD-------------------------------------------LSGEKFNL 623
             LE+ + D                                           +   +FNL
Sbjct: 110 YELEDKVQDTFRPLPTFIREVTPRCKKDHTLSAVGLKFLGEQWSDVCGPFSRVDCPEFNL 169

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            S +Q+G  L     +     T+ G        L +I   D P  + I E+  + K +  
Sbjct: 170 GSRQQIGRYL-QHFGWKPTKFTEKGHAIVDESVLSKI--TDIPEAQLIAEYLMVQK-RVA 225

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPT 742
              S     +    RVH   +    +TGR+   EPNL  +P ++   G++ R  +  P  
Sbjct: 226 QIQSWIEAADDDG-RVHGRVNTNGAVTGRMTHSEPNLAQVPAVRAPYGKECRSCWTVPEG 284

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
             L+  D S +ELR+LAH            +  DIH          N      + R  AK
Sbjct: 285 YSLVGFDASGLELRMLAHYMGDREYTNEILHG-DIHTA--------NQHLAGLESRDQAK 335

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
           T  ++ +YG    +L T +       +    R+ +  P + +  E+     
Sbjct: 336 TFIYAFLYGAGDAKLGTIVGGNARTGSALRARFLNGLPALRDLTERVATKA 386


>gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2]
 gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 650

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 94/611 (15%), Positives = 199/611 (32%), Gaps = 135/611 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 59  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 113

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 114 DKVGEVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 173

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 174 EVEMAIANKIKDFPVTAIEQTYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 223

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +         K           E +    
Sbjct: 224 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIPNLQKK-------TVQEYLKEAT 275

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN-- 722
               K +    Q+SK      + + + +    +RV   +      TGR A     LQN  
Sbjct: 276 GKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNLT 334

Query: 723 -----------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                                        +  +  L Q +R  F +    +L  +D+S I
Sbjct: 335 KHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAI 394

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIYG 811
           E R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y 
Sbjct: 395 EARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQ 454

Query: 812 ISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------------- 853
                L    A ++ I  +E    +  + +  P I  + +  +                 
Sbjct: 455 GGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG 514

Query: 854 ----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAAI 888
                + G+  +E   GR + Y                    ++N   S ++    +   
Sbjct: 515 LRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVE 574

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           N  +Q +A D+   ++  +        L  K++  +HDE++ E+P        + I   M
Sbjct: 575 N-IVQATARDLLAISIARLEA------LGYKIVGHVHDEVIVEIPRGS--NGLKEIETIM 625

Query: 949 EKACLPKINLR 959
            K       L 
Sbjct: 626 NKPVEWAKGLN 636


>gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
 gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
          Length = 650

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 110/681 (16%), Positives = 216/681 (31%), Gaps = 143/681 (20%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +      I T +        +    +  + +D         F D  V     ++G+  L 
Sbjct: 1   MTILGIDIETYSRVDLTKSGV---YAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQ-LP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG---ISMRGFEDIMLMSYVLDSGRSSH 503
             +L+ L     +   +K   N  +++  + ++    +    +    + +  L  G   H
Sbjct: 57  DNVLNALT----DPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTL--GLPGH 110

Query: 504 DIASIAQ----------------KWLSYTRKEILKSRKSSIPIDKISDSQVQE---HAIE 544
            +  +A+                ++ S   K    + + +  + +    +  +   +  +
Sbjct: 111 -LGDVAKVLGLKQQKDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQ 169

Query: 545 NSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           +  V   +   L   P +  E  L   ++          ++   G+ +D  L+    A  
Sbjct: 170 DVAVERDIRKTLERFPVIEAEHKLWCLDQ----------RINDGGVLVDSQLVTNAIACD 219

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           ++    L      L+G   N  S  QL   L         +  K           E +  
Sbjct: 220 TQYQDKLMAKAAKLTGLD-NPKSVSQLKQWLLKTDGLEVESLNK-------ESVPELLKQ 271

Query: 663 GDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            ++  +K +LE RQ ++K       ++     K  +         +  TGR A     +Q
Sbjct: 272 TESSTVKQMLELRQEMAKTSVKKYLAMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQ 331

Query: 722 NIP----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQI 753
           N+P                            + T L Q IR AF+     + I AD+S I
Sbjct: 332 NLPRNSIKDLDQARQLLKAGDYEMLELLFESVPTVLSQLIRTAFVPKEGHRFIVADFSAI 391

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIYG 811
           E R++A +A       VF     I+   A+ +F V IE+++    +R+  K    ++ Y 
Sbjct: 392 EARVIAWLADEKWRMDVFRTHGKIYEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQ 451

Query: 812 ISPFRLATQL----RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----RQNGYVETIF 863
             P  L         +   E    +K +    P I ++   T+       ++   VE   
Sbjct: 452 GGPGALIAMGALKEGLTEEELPGLVKLWRQSSPNIVKFWYDTEAAAIKAVKEKTTVELHH 511

Query: 864 GRRIHYD----EINSPKSSIRNINERAAINAP---------------------------- 891
           G    Y+     I  P        +    N P                            
Sbjct: 512 GIHFIYESGILFIRLPSGRRLAYIKPRIQNNPRLDKPALTYEGQEQGTKQWGRLYTYGGK 571

Query: 892 -----IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--EEITTASQII 944
                +Q  A D    A++ +  +        K ++ +HDE V E+P     +  A +I 
Sbjct: 572 LVENIVQAVARDCLAEALLRLDVA------GYKTVMHVHDESVMEMPHGVGSLEDACRI- 624

Query: 945 VHSMEKACLPKINLRVPLKVN 965
              ME+       L  P++ +
Sbjct: 625 ---MEQPIPWAPGL--PMRAD 640


>gi|322491670|emb|CBZ26943.1| putative mitochondrial structure specific endonuclease I (SSE-1)
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 297

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 37/298 (12%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFC----NMLWKLLQNSRKESI 57
            +E  + L+DG + ++R ++     + +  G P++ +  F       +     +     +
Sbjct: 3   AREKAIVLIDGPALVHRWYHRWSY-TTERYGTPID-VKQFAIKNARFMIATAHSFDPAHM 60

Query: 58  ASH----------------FAVIFDYPAVTFRNEIYPDYKANRPK---IPEMLLPQLPLV 98
           A H                  V FD+     R +IY DYKANR +    PE  L +    
Sbjct: 61  AQHLLSPQTEYAHTLKHNRIIVCFDHGDG-GRRQIYADYKANRLEKTVTPEFRLIERVAK 119

Query: 99  RLATQAFGIPAIEIQ---------GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS 149
           ++         + +            EADD+IAT  +  ++      ++S D DL QLV 
Sbjct: 120 KVFADEPRESLLVVPDCDAGLANLNAEADDMIATLAFFNQQSRRPTVVMSHDYDLYQLVD 179

Query: 150 P--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
               +  YD   +  +    VI++ G+PP+ +   ++L GDS DNIPG+ GIG   A  L
Sbjct: 180 EAKKSYHYDIRTKHLVSERGVIERIGVPPKLVRDFKSLAGDSSDNIPGVNGIGKVRARNL 239

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           L++YG+L+ IL    + +     E + E A+ A +SR+LV  R    +    E  + +
Sbjct: 240 LKKYGDLDGILFQGVKKETGHLGELLNEGAKMALISRQLVDFRMCPKVIKVCESFMRK 297


>gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
          Length = 653

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 103/631 (16%), Positives = 200/631 (31%), Gaps = 127/631 (20%)

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GI----SMRGFEDI 489
             Q    ++    EI   +     +++ LKI  N +++++ L +Y G+        +   
Sbjct: 40  DGQPVECEDLTISEIPDEIVAALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCT 99

Query: 490 MLMS-------------YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           M+ +               L+  +      +    + S   K   K+   +  + + +  
Sbjct: 100 MVHANELGLPASLGQCAKYLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPE 159

Query: 537 QVQ---EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           + Q   E+ I++ NV + +   L    + E    +Y         +  ++   G +ID +
Sbjct: 160 KWQTFIEYCIQDVNVEMAIANKLNRFPVPESEWKLYT--------LDQRINDRGAEIDHE 211

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           L       ++    +    + +L+G + N +S  QL   L  +         K G+    
Sbjct: 212 LATAAIDIMADLSEAGLNEMKELTGLE-NPNSLAQLKKWLEEQ----GTPFEKLGKEVVL 266

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                     +   +  +      S  K           + R   +  FY   +  TGR 
Sbjct: 267 KALALGNLPENVAEVLKLRLSLSNSSTKKYLMMDNARCSDNRIHGILQFY--GANRTGRW 324

Query: 714 ASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKL 745
           A     +QN+P                            +   L Q IR   ++    + 
Sbjct: 325 AGRLLQVQNLPRNYLSEIDFARQLVKAKDVEGIELMYEDVPDTLKQLIRTGLVAKEGHRF 384

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---------PQ 796
           I +D+S IE R++A  AK   + +VF     I+   AA++F +   +V+           
Sbjct: 385 IVSDFSAIEARVIAWYAKQDWVLEVFRTHGKIYEATAAQMFHLG--EVTDYDWKSHEGKD 442

Query: 797 MRRHAKTINFSIIYGISPFRLATQL----RIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           MR+  K    ++ Y   P  L         I   E  D + R+      I  +  +T+  
Sbjct: 443 MRQRGKVATLALGYQGGPGALKAMGALENGIEEHELQDIVDRWRTANKRIKNFWHETQKA 502

Query: 853 V--------------------------------RQNGYVETIFGRRIHYDEINSPKSSIR 880
           V                                R+  Y +    +  +   I       +
Sbjct: 503 VIDCLQNGGIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLEQGDYGPAIFYEGQGDK 562

Query: 881 NINERAAINA------PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                            +Q +A D+   AM+ + K+         ++  +HDE V EVPE
Sbjct: 563 VAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKA------GYPIVFHVHDEAVAEVPE 616

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            E   + + +   M         L  PL   
Sbjct: 617 GE--KSIEEMNEIMSVVPDWAEGL--PLNAE 643


>gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 651

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 113/649 (17%), Positives = 198/649 (30%), Gaps = 115/649 (17%)

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
             I+  +    + +D    +    +D       D      +  E+L       +    +K
Sbjct: 8   DLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLD----LIDEPAIIK 63

Query: 465 IGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
             HN  +++L L RY    +    +   M+ + +L    S  D+ ++        +  I 
Sbjct: 64  YAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKMRIG 123

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP--KLIVEKLLHVYERLDKPMIDV 579
           K+  S             + +        + W L +      VE    +  +LDK  I  
Sbjct: 124 KTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFPIPA 183

Query: 580 --------VSQMEITGIQIDQDLLKQ---VSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628
                     +M   G +ID +++           + L++  E I +  G K       Q
Sbjct: 184 SEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNGIGPK----KIAQ 239

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS-KIKSTYADS 687
           L + +  K      +  K       A      +   +P  + +L+ RQ S K   T   +
Sbjct: 240 LKEWICRKEDRSIESLDK------DAVIELLKDSSISPETRRVLQIRQESGKTSITKYAA 293

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT-------------------- 727
           +   +    +         +  TGR A      QN+P                       
Sbjct: 294 IQRSVCNDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLD 353

Query: 728 --------DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
                        IR A I P       ADYS IE R+ A         +VF  +  I+ 
Sbjct: 354 MLYGSYNQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYE 413

Query: 780 MVAAEIFGVNIEKVS--PQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIK 833
             AA++F V IE V+    +R+  K    ++ YG     L       + +   E  D + 
Sbjct: 414 ASAAQMFHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMGGADMGLSEDEMQDIVN 473

Query: 834 RYFHRFPGIHEYIEKTKNFV--------------------------------RQNGYVET 861
           ++    P I +   + ++                                  R+  YV  
Sbjct: 474 KWRLASPNIKKMWYRVQDAAYTAVRERKRVSVVHGVRYFYSSGILFAELPSGRRLAYVRP 533

Query: 862 IFGRRIHYDEIN------SPKSSIRNINERAAI------NAPIQGSAADITRRAMISVHK 909
              +  + DE+                  R            IQ  A D   +AM+ +  
Sbjct: 534 KLKKGRYGDELTYEGYGSDQDGKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDD 593

Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
                    K+++ IHDE+V EVP E   +    I   M +       L
Sbjct: 594 V------GYKIIMHIHDEVVVEVPSETAESCLIDIERIMGEPIPWAPGL 636


>gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
 gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
          Length = 650

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 90/587 (15%), Positives = 194/587 (33%), Gaps = 133/587 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 59  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 113

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 114 DKVGEVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 173

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 174 EVEMAIANKIKDFPVTAIEQTYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 223

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +         K           E +    
Sbjct: 224 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIPNLQKK-------TVQEYLKEAT 275

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN-- 722
               K +    Q+SK      + + + +    +RV   +      TGR A     LQN  
Sbjct: 276 GKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNLT 334

Query: 723 -----------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                                        +  +  L Q +R  F +    +L  +D+S I
Sbjct: 335 KHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAI 394

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIYG 811
           E R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y 
Sbjct: 395 EARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQ 454

Query: 812 ISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------------- 853
                L    A ++ I  +E    +  + +  P I  + +  +                 
Sbjct: 455 GGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG 514

Query: 854 ----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAAI 888
                + G+  +E   GR + Y                    ++N   S ++    +   
Sbjct: 515 LRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVE 574

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           N  +Q +A D+   ++  +        L  K++  +HDE++ E+P  
Sbjct: 575 N-IVQATARDLLAISIARLEA------LGFKIVGHVHDEVIVEIPRG 614


>gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47]
 gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47]
 gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 653

 Score =  141 bits (355), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 90/587 (15%), Positives = 194/587 (33%), Gaps = 133/587 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 62  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 116

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 117 DKVGEVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 176

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 177 EVEMAIANKIKDFPVTAIEQTYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 226

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +         K           E +    
Sbjct: 227 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIPNLQKK-------TVQEYLKEAT 278

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN-- 722
               K +    Q+SK      + + + +    +RV   +      TGR A     LQN  
Sbjct: 279 GKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNLT 337

Query: 723 -----------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                                        +  +  L Q +R  F +    +L  +D+S I
Sbjct: 338 KHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAI 397

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIYG 811
           E R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y 
Sbjct: 398 EARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQ 457

Query: 812 ISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------------- 853
                L    A ++ I  +E    +  + +  P I  + +  +                 
Sbjct: 458 GGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG 517

Query: 854 ----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAAI 888
                + G+  +E   GR + Y                    ++N   S ++    +   
Sbjct: 518 LRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVE 577

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           N  +Q +A D+   ++  +        L  K++  +HDE++ E+P  
Sbjct: 578 N-IVQATARDLLAISIARLEA------LGFKIVGHVHDEVIVEIPRG 617


>gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
 gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
          Length = 640

 Score =  141 bits (355), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 86/597 (14%), Positives = 194/597 (32%), Gaps = 113/597 (18%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY-GI----SMRGFEDIMLMSYVLDSGRSSHDI 505
             +K    ++   K   N +++++ L RY G+        ++  M+++  L    S    
Sbjct: 55  EDIKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKC 114

Query: 506 A---SIAQ----------KWLSYTRKEILKSRKSSIPIDKISDSQVQ---EHAIENSNVI 549
           A    +AQ          K+ S   K    +   +  + +    + Q    + +++  V 
Sbjct: 115 ALYLKLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVE 174

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           + +   L    + ++    Y            ++   G+ +D++L+          + SL
Sbjct: 175 MAIAEKLESVPVHDREWDYY--------VCDQRINDRGVALDKELVASALYCKDVKMESL 226

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
              +  L+G   N +S  QL   L     + +   TK       A   +++   +  + +
Sbjct: 227 SGELKALTGLD-NPNSRAQLLPWLKEH-GYSANGLTK-------ADVEQELKKAEGELKR 277

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK--- 726
            +    Q +       +++   +    +         ++ TGR A     +QN+      
Sbjct: 278 VLELKLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIK 337

Query: 727 -------------------------TDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
                                      L Q +R A ++        +D+S IE R++A  
Sbjct: 338 DLDDAREYVKKRDIDAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWF 397

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT-- 819
           A       VF     I+   A+++FG+ IE++  ++R+  K    ++ Y   P  L    
Sbjct: 398 AGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG 457

Query: 820 --QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------------RQNGYV 859
              + +   E    +  +      I ++ +  +                      + G++
Sbjct: 458 ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKIRFRYRKGFL 517

Query: 860 ETIFGRRIHYDEINSP--------KSSIRNINERAAINA-----------PIQGSAADIT 900
                   +     +         K       +RA   A            +Q +A DI 
Sbjct: 518 FITLPSGRNLAYARAKVEPGDYGDKIIYEGQGDRAYFTAQETYGGKLVENIVQATARDIL 577

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
             A++ +  +         ++  +HDE + E     I   + ++  + E A    +N
Sbjct: 578 AEALLRIEAA------GYDVVFHVHDEAIIEGSGLIIEEVNDLMAQAPEWAEGLPLN 628


>gi|71424184|ref|XP_812706.1| mitochondrial structure specific endonuclease I (SSE-1)
           [Trypanosoma cruzi strain CL Brener]
 gi|70877520|gb|EAN90855.1| mitochondrial structure specific endonuclease I (SSE-1), putative
           [Trypanosoma cruzi]
          Length = 295

 Score =  141 bits (355), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 127/299 (42%), Gaps = 42/299 (14%)

Query: 1   MQKENH-LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M      + LVDG + ++R ++     S      PV+ +  F     + +  +      S
Sbjct: 1   MSVRERAVVLVDGPAVVHRWYH---RWSYTSKHTPVD-VKRFTITNARHIIATAHSFDPS 56

Query: 60  HFA--------------------VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
           H A                    V FD      R E+YP YK NR +  E       + +
Sbjct: 57  HLAQHLLSPQVEYAHTPKHNKIIVCFD-QGDGGRRELYPAYKENRAER-EHAAELSVIKK 114

Query: 100 LATQAFG---------IPAIEIQ----GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +A + F          +P ++ +      EADDIIAT     ++      ++S D DL Q
Sbjct: 115 VAIKVFTGEPKNTLIVLPDLDAKLKDVDAEADDIIATLALHNQQLKIPTVVMSHDYDLYQ 174

Query: 147 LVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
           L+        YD   +  +  + VI++ G+ P+ +   ++L GDS DNIPG+ GIG   A
Sbjct: 175 LIDEANKCYHYDIRTKHLVSEKGVIERVGVHPKLVRDYKSLAGDSSDNIPGVKGIGKTRA 234

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
             LL++YG+LE +L    + +     + +   A  A LSRKLV LR+   +    E  +
Sbjct: 235 LQLLKKYGDLEGVLTKGKKKQGGHLGDLLRAGAADAELSRKLVELRSCPKVLKACEAFM 293


>gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 570

 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 134/411 (32%), Gaps = 73/411 (17%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI---------SKNLLSLEENIYD- 615
           L +    +     + ++M   G+    +    +  ++            L  L   I   
Sbjct: 164 LRLLLAAESVGALIAAEMRFAGLPYSAERHDALLTDLLGPRPAYGGPVVLEDLAAQIRAA 223

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           L     N  SP  L   L            +    + ++    ++   D+P+I+ +L ++
Sbjct: 224 LDSPDLNPDSPPALLRAL------------QRAGLRVSSTSSWELRELDHPVIEPLLHYK 271

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           +L+++ +    S       +  R    Y     +TGR A+   +   +P       ++R 
Sbjct: 272 KLARLLTANGWSWLESWV-QDGRFRPDYVPGGVVTGRWATRGGSALQLPK------QLRG 324

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           A ++ P  KL+ AD +Q+E RIL  +A+   +        D++  +      V+   V+ 
Sbjct: 325 AVVADPGWKLVVADAAQLEPRILTGLAQDQRMAAAGR-GQDLYTGI------VSAGAVT- 376

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R  AK      +YG               E+   + R    FP     +E+      +
Sbjct: 377 -ERAQAKVAMLGAMYGA-----------TTGESGRLMPRLARAFPRAVRLVEEAARAGER 424

Query: 856 NGYVETIFGRRIHYDEIN---------------SPKSSIRNINE---RAAINAPIQGSAA 897
              V +  GR       +               + +   R       R   N  +Q SAA
Sbjct: 425 GEAVTSHLGRSSPRPGGSWQETQSAASTAESTPADERRARAQARDWGRFTRNFVVQASAA 484

Query: 898 DITRRAMISVHKSLEDHKLA------TKMLLQIHDELVFEVPEEEITTASQ 942
           +     M  +   L              ++  +HDE++   P+       +
Sbjct: 485 EWALCWMAELRNRLTALAPGRPLTEAPHLVYFLHDEVIVHTPDALAEAVGE 535


>gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A]
 gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A]
          Length = 650

 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 96/588 (16%), Positives = 202/588 (34%), Gaps = 135/588 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 59  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 113

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 114 DKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 173

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P  ++E+   V+++           +   GI++ + L+   +    +
Sbjct: 174 EVEMTIANKIKDFPVTVIEQAYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 223

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +              K T QD  ++  G 
Sbjct: 224 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLKVATGK 277

Query: 665 NPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN- 722
               K +LE R Q+SK      + + + +    +RV   +      TGR A     LQN 
Sbjct: 278 ---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNL 333

Query: 723 ------------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
                                         +  +  L Q +R  F +    +L  +D+S 
Sbjct: 334 TKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSA 393

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIY 810
           IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y
Sbjct: 394 IEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGY 453

Query: 811 GISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------- 853
                 L    A ++ I  +E    +  + +  P I  + +  +                
Sbjct: 454 QGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH 513

Query: 854 -----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAA 887
                 + G+  +E   GR + Y                    ++N   S ++    +  
Sbjct: 514 GLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLV 573

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            N  +Q +A D+   ++  +        L  K++  +HDE++ E+P  
Sbjct: 574 EN-IVQATARDLLAISIARLEA------LGFKIVGHVHDEVIVEIPRG 614


>gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A]
 gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A]
          Length = 653

 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 102/631 (16%), Positives = 197/631 (31%), Gaps = 127/631 (20%)

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GI----SMRGFEDI 489
             Q    ++    EI   +     +++ LKI  N +++++ L +Y G+        +   
Sbjct: 40  DGQPVECEDLTISEIPDEIVAALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCT 99

Query: 490 MLMS-------------YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           M+ +               L+  +      +    + S   K   K+   +  + + +  
Sbjct: 100 MVHANELGLPASLGQCAKYLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPE 159

Query: 537 QVQ---EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           + Q   E+ I++ NV + +   L    + E    +Y         +  ++   G +ID +
Sbjct: 160 KWQTFIEYCIQDVNVEMAIANKLNRFPVPESEWKLYT--------LDQRINDRGAEIDHE 211

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           L       ++    +    + +L+G + N +S  QL   L  +         K G+    
Sbjct: 212 LATAAIDIMADLSEAGLNEMKELTGLE-NPNSLAQLKKWLEEQ----GTPFEKLGKEVVL 266

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                     +   +  +      S  K           + R   +  FY   +  TGR 
Sbjct: 267 KALALGNLPENVAEVLKLRLSLSNSSTKKYLMMDNARCSDNRIHGILQFY--GANRTGRW 324

Query: 714 ASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKL 745
           A     +QN+P                            +   L Q IR   ++    + 
Sbjct: 325 AGRLLQVQNLPRNYLSEIDFARQLVKAKDVEGIELMYEDVPDTLKQLIRTGLVAKEGHRF 384

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---------PQ 796
           I +D+S IE R++A  AK   + +VF     I+   AA++F +   +V+           
Sbjct: 385 IVSDFSAIEARVIAWYAKQDWVLEVFRTHGKIYEATAAQMFHLG--EVTDYDWKSHEGKD 442

Query: 797 MRRHAKTINFSIIYGISPFRLATQL----RIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           MR+  K    ++ Y   P  L         I   E  D + R+      I  +  +T+  
Sbjct: 443 MRQRGKVATLALGYQGGPGALKAMGALENGIEEHELQDIVDRWRTANKRIKNFWHETQKA 502

Query: 853 V--------------------------------RQNGYVETIFGRRIHYDEINSPKSSIR 880
           V                                R+  Y +       +   I       +
Sbjct: 503 VIDCLQNGGIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLKEGDYGPAIFYEGQGDK 562

Query: 881 NINERAAINA------PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                            +Q +A D+   AM  + +          ++  +HDE V EVPE
Sbjct: 563 VAFTEQQTYGGKLVENIVQATARDVLAEAMQRLERE------GYPIVFHVHDEAVAEVPE 616

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            E   + + +   M         L  PL   
Sbjct: 617 GE--KSIEEMNEIMSVVPDWAEGL--PLNAE 643


>gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           MR1]
          Length = 631

 Score =  140 bits (354), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 90/587 (15%), Positives = 194/587 (33%), Gaps = 133/587 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 62  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 116

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 117 DKVGEVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 176

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 177 EVEMAIANKIKDFPVTAIEQTYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 226

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +         K           E +    
Sbjct: 227 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIPNLQKK-------TVQEYLKEAT 278

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN-- 722
               K +    Q+SK      + + + +    +RV   +      TGR A     LQN  
Sbjct: 279 GKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNLT 337

Query: 723 -----------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                                        +  +  L Q +R  F +    +L  +D+S I
Sbjct: 338 KHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAI 397

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIYG 811
           E R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y 
Sbjct: 398 EARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQ 457

Query: 812 ISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------------- 853
                L    A ++ I  +E    +  + +  P I  + +  +                 
Sbjct: 458 GGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG 517

Query: 854 ----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAAI 888
                + G+  +E   GR + Y                    ++N   S ++    +   
Sbjct: 518 LRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVE 577

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           N  +Q +A D+   ++  +        L  K++  +HDE++ E+P  
Sbjct: 578 N-IVQATARDLLAISIARLEA------LGFKIVGHVHDEVIVEIPRG 617


>gi|330004306|ref|ZP_08304864.1| 5'-3' exonuclease, SAM domain protein [Klebsiella sp. MS 92-3]
 gi|328536678|gb|EGF63000.1| 5'-3' exonuclease, SAM domain protein [Klebsiella sp. MS 92-3]
          Length = 325

 Score =  140 bits (354), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 123/310 (39%), Gaps = 36/310 (11%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + ++DG+S  Y  ++           +  +A+ GF   + +     +   I     V++D
Sbjct: 8   ILIIDGNSLGY--YHQQQPKKLHSGDMETHAVFGFITNMRRYASLLKARPI-----VLWD 60

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R E YPDYKANR       ++ E    Q P ++ A  + G+  I     EADD+
Sbjct: 61  -GFSDKRREFYPDYKANRDDNAEMKQMKEGFAVQKPFIKKAITSLGVDQITAIDGEADDL 119

Query: 121 IATYTYI--AEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI- 174
                    A K+   + +++ D D +QLV             K ++I+IE   +  G  
Sbjct: 120 AGILKKRYVASKDVEHIYLLTADSDWIQLVDEKVTWVSLREDAKHKRINIEAFSELTGYP 179

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-------SRIKQK 227
            P   +  +AL GD  DNI  + GIG K A  L+ EYG++  ++           + + K
Sbjct: 180 TPRGYLEGKALQGDKSDNIQQVGGIGDKGAMDLINEYGSIVTLVKGICDGSIVMDKGRNK 239

Query: 228 KRRENILEYAETARL-SRKLVMLRTDVPITIPLE--------HLILEDCNGPRLISFLKA 278
               N+ + A   +   R L     ++ +   ++         +I  + +          
Sbjct: 240 TAVNNLAKNAFNEKTGCRMLEAFMRNIKLMDLIDTKFAPEKLEIIRGEQSLETFKQICMQ 299

Query: 279 LEFTKLINRV 288
           L F  +I+ +
Sbjct: 300 LSFQSIISDM 309


>gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35]
 gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35]
          Length = 650

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 96/588 (16%), Positives = 202/588 (34%), Gaps = 135/588 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 59  ETFKIALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 113

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 114 DKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 173

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 174 EVEMTIANKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 223

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +              K T QD  +   G 
Sbjct: 224 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLKEATGK 277

Query: 665 NPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN- 722
               K +LE R Q+SK      + + + +    +RV   +      TGR A     LQN 
Sbjct: 278 ---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNL 333

Query: 723 ------------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
                                         +  +  L Q +R  F +    +L  +D+S 
Sbjct: 334 TKHYISDTELEIARDLIKDQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSA 393

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIY 810
           IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y
Sbjct: 394 IEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDSLRQKGKVSELALGY 453

Query: 811 GISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------- 853
                 L    A ++ I  +E    +  + +  P I  + +  +                
Sbjct: 454 QGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH 513

Query: 854 -----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAA 887
                 + G+  +E   GR + Y                    ++N   S ++    +  
Sbjct: 514 GLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLV 573

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            N  +Q +A D+   ++  +  S        K++  +HDE++ E+P++
Sbjct: 574 EN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPKD 614


>gi|269794009|ref|YP_003313464.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
 gi|269096194|gb|ACZ20630.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
          Length = 568

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 136/424 (32%), Gaps = 71/424 (16%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI----------SKNLLSLEENIYD 615
           L +    +     + ++M + G+  D     ++  ++             L +    +  
Sbjct: 164 LWLLLAAESAGALIAAEMTVAGVPWDVVEHDRILTDLLGPRPALGYRPALLEAKAAQVSA 223

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
             G + NL SP +L                ++     T+    ++   D+P I  +LE++
Sbjct: 224 ALGVEVNLDSPVEL------------LRSMRSAGLPATSTRSWELQQIDHPAIAPLLEYK 271

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           ++S++ +       +       R    Y     +TGR AS             L  +IR 
Sbjct: 272 KMSRLMTANGWHWLDTWVADG-RFRPVYVPGGVVTGRWASDGGGALQ------LPHQIRS 324

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           A  S P   L+ AD +Q+E RILA ++    + +    +     MVA           + 
Sbjct: 325 AVRSDPGWSLVVADAAQLEPRILAAMSGDAAMAEAGRAADMYEGMVATG---------AV 375

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           + R+ AK      +YG             + E+   + R    FP     +E       Q
Sbjct: 376 ETRQQAKFGMLGAMYGG-----------TQGESGRMLPRITRAFPQALALVEAAARAGEQ 424

Query: 856 NGYVETIFGRRIHYD--EINSPK----------------SSIRNINERAAINAPIQGSAA 897
              V T  GR       E  S                   +      R   N  +QG+AA
Sbjct: 425 GEVVSTWLGRSSPLPSAEWRSAHSAASAEGGSAAEQEAVRTQARSWGRFTRNFVVQGTAA 484

Query: 898 DITRRAM--ISVHKSLEDHKL--ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
           +     M  + +        L     +   +HDE++   P       + ++  +  +A  
Sbjct: 485 EWALCWMSLLRLRLRALSEGLTDGPHLAFFLHDEIMVHTPTGLADEVATLVQETAHEAGR 544

Query: 954 PKIN 957
               
Sbjct: 545 LLFE 548


>gi|302808221|ref|XP_002985805.1| hypothetical protein SELMODRAFT_122968 [Selaginella moellendorffii]
 gi|300146312|gb|EFJ12982.1| hypothetical protein SELMODRAFT_122968 [Selaginella moellendorffii]
          Length = 324

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 18/256 (7%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYP-AVTFRNEIYPDYKANRPKIPE---------MLLP 93
            LW +    R+  +      +FD      +R +I P YKA R K             L  
Sbjct: 65  FLWWMRAFLRRIVLDDPVIAVFDGEFGNDYRRKILPAYKAGRRKFKPLDPSFKWTRGLEA 124

Query: 94  QLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
                +   +   IP +++   EADD+IAT             I S DKD  QLVS    
Sbjct: 125 SFSRFQCFLRQCNIPVVKVDNAEADDVIATLARQVNDRSLKAVIASPDKDFKQLVSENVE 184

Query: 154 LYDT----VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           L        +     ++  +++    P   + L+ L GD+ D +PG+PG G KTA  L++
Sbjct: 185 LLIPFADLRRWSFYTVKDYVEQHKCEPGIELGLRCLLGDAADGVPGVPGFGRKTALKLMR 244

Query: 210 EYGNLENILINAS--RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           ++G+LEN+L  A+   + +   ++ + E++     + +++ LR D+ + +P+E  +  D 
Sbjct: 245 KHGSLENLLSAAAFRTVGKPYIQDALKEHSVLLEKNLEVLSLRRDINVELPVEWCLSRDK 304

Query: 268 --NGPRLISFLKALEF 281
             +   L    K LE 
Sbjct: 305 SNDLAALQWLEKELEM 320


>gi|302808435|ref|XP_002985912.1| hypothetical protein SELMODRAFT_46231 [Selaginella moellendorffii]
 gi|300146419|gb|EFJ13089.1| hypothetical protein SELMODRAFT_46231 [Selaginella moellendorffii]
          Length = 273

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 16/239 (6%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYP-AVTFRNEIYPDYKANRPKIPE---------MLLP 93
            LW +    R+  +      +FD      +R +I P YKA R K             L  
Sbjct: 27  FLWWMRAFLRRIVLDDPVIAVFDGEFGNDYRRKILPSYKAGRRKFKPLDPSFKWTRGLEA 86

Query: 94  QLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
                +   +   IP +++   EADD+IAT             I S DKD  QLVS    
Sbjct: 87  SFSRFQCFLRQCNIPVVKVDNVEADDVIATLARQVNDRSLKAVIASPDKDFKQLVSENVE 146

Query: 154 LYDT----VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           L        +     ++  +++    P   + L+ L GD+ D +PG+PG G KTA  L++
Sbjct: 147 LLIPFADLRRWSFYTVKDYVEQHKCEPGIELGLRCLLGDAADGVPGVPGFGRKTALKLMR 206

Query: 210 EYGNLENILINAS--RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           ++G+LEN+L  A+   + +   ++ + E++     + +++ LR D+ + +P+E  +  D
Sbjct: 207 KHGSLENLLSAAAFRTVGKPYIQDALKEHSVLLEKNLEVLSLRRDINVELPVEWCLSRD 265


>gi|158345163|ref|YP_001522870.1| putative DNA polymerase [Enterobacteria phage LKA1]
 gi|114796459|emb|CAK24997.1| putative DNA polymerase [Pseudomonas phage LKA1]
          Length = 791

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 130/404 (32%), Gaps = 76/404 (18%)

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY--------------ADSLPN 690
            KT  + T+++ LE +          +     L K   TY                 +  
Sbjct: 387 DKTPVYSTSSEVLEVLAKHGFEAADKLSRMASLEKDNGTYYRSVEYDKEGNVKKVKGMLQ 446

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT--KKLISA 748
           ++      +H   +L +T TGRL+S  PNLQN+P       +++  F S      ++I  
Sbjct: 447 YVQPDGI-IHHSLNLCATATGRLSSSYPNLQNLPRDGT--SRVKEMFESRFGTAGRIIEV 503

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--------------- 793
           DYS +E+ +LA ++    L +      D+H +  A   G   E+V               
Sbjct: 504 DYSALEVVMLAALSGDENLLEQLVKGTDMHCLRLAAKLGEPYEEVLHKAVENQAHPEHKR 563

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
             QMR   K  +F+  YG S   +A    +    A ++++     FP    +    +  V
Sbjct: 564 YKQMRTDIKPPSFAAQYGASAEGIAYATGVSVEYAKEFLETEARLFPQSIAFRGVVRAEV 623

Query: 854 RQNGYVETIFGR-----------------------RIHYDEINSPKSSIRN----INERA 886
            + G +     R                       R  + +       +R       +  
Sbjct: 624 ERTGELPEGLHREQDEATGAWRIYRRGYWQAPGGARYSFRQWPQWNKELRQRVMDYKDTQ 683

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATK---------MLLQIHDELVFEVPEEEI 937
             N   QG A  +   +   V + L                  +  +HD L F+V E  +
Sbjct: 684 IANYWCQGEAFYLMAVSAGRVLRWLLSVNFLANEEFPQGRVCFINNVHDALYFDVHESVV 743

Query: 938 TTASQIIVHSMEKACLPKIN-L-----RVPLKVNIKVSNNWQEE 975
                 +   ME A       L      VP     +   N  ++
Sbjct: 744 REVGLQVKAIMEDAPKYMSERLGYNIAHVPFPAAAEAGLNMADK 787


>gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
          Length = 653

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 104/633 (16%), Positives = 200/633 (31%), Gaps = 131/633 (20%)

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GI----SMRGFEDI 489
             Q    ++    EI   +     +++ LKI  N +++++ L +Y GI        +   
Sbjct: 40  DGQPVECEDLTISEIPDEIVAALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCT 99

Query: 490 MLMS-------------YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           M+ +               L+  +      +    + S   K   K+   +  + + +  
Sbjct: 100 MVHANELGLPASLGQCAKYLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPE 159

Query: 537 QVQ---EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           + Q   E+ I++ NV + +   L    + E    +Y         +  ++   G +ID +
Sbjct: 160 KWQTFIEYCIQDVNVEMAIANKLNRFPVPESEWKLYT--------LDQRINDRGAEIDHE 211

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
           L       ++    +    +  L+G + N +S  QL   L  +         K G+    
Sbjct: 212 LATAAIDIMADLSEAGLNEMKALTGLE-NPNSLAQLKKWLEEQ----GTPFEKLGKEVVL 266

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                     +   +  +      S  K           + R   +  FY   +  TGR 
Sbjct: 267 KALALGNLPENVAEVLKLRLSLSNSSTKKYLMMDNARCSDNRIHGILQFY--GANRTGRW 324

Query: 714 ASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKL 745
           A     +QN+P                            +   L Q IR   ++    + 
Sbjct: 325 AGRLLQVQNLPRNYLSEIDFARQLVKAKDVEGIELMYEDVPDTLKQLIRTGLVAKEGHRF 384

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---------PQ 796
           I +D+S IE R++A  AK   + +VF     I+   AA++F +   +V+           
Sbjct: 385 IVSDFSAIEARVIAWYAKQDWVLEVFRTHGKIYEATAAQMFHLG--EVTDYDWKSHEGKD 442

Query: 797 MRRHAKTINFSIIYGISPFRLATQL----RIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           MR+  K    ++ Y   P  L         I   E  D + R+      I  +  +T+  
Sbjct: 443 MRQRGKVATLALGYQGGPGALKAMGALENGIEEHELQDIVDRWRTANKRIKNFWHETQKA 502

Query: 853 V--------------------------------RQNGYVETIFGRRIHYDEINSPKSSIR 880
           V                                R+  Y +       +   I       +
Sbjct: 503 VIDCLQNGGIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLKEGDYGPAIFYEGQGDK 562

Query: 881 NINERAAINA------PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                            +Q +A D+   AM  + +          ++  +HDE V EVPE
Sbjct: 563 VAFTEQQTYGGKLVENIVQATARDVLAEAMQRLERE------GYPIVFHVHDEAVAEVPE 616

Query: 935 EE--ITTASQIIVHSMEKACLPKINLRVPLKVN 965
            E  I   ++I+      + +P     +PL   
Sbjct: 617 GEKSIEEMNKIM------SVVPDWAEGLPLNAE 643


>gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30]
 gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30]
          Length = 653

 Score =  140 bits (352), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 104/653 (15%), Positives = 220/653 (33%), Gaps = 140/653 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST-GKNTL 445
           +   +  I T + +          +    + +D    +    ID    ++ D T   N  
Sbjct: 1   MKFMNIDIETYSSNDISK----CGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEP 56

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSS 502
                   K    +    K   N  +++  L ++    +    +   M+     +S R  
Sbjct: 57  FHADYETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIG 111

Query: 503 H--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEH 541
               +  + +                ++ S   K   +   R  ++P   +    Q  ++
Sbjct: 112 LPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDY 171

Query: 542 AIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            I +  V + +   ++  P  ++E+   V+++           +   GI++ + L+   +
Sbjct: 172 CIRDVEVEMTIANKIKDFPVTVIEQAYWVFDQ----------HINDRGIKLSKSLMLGAN 221

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
               ++   L +    ++G + N +SP QL   L  +              K T QD  +
Sbjct: 222 VLDKQSKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLK 275

Query: 660 INCGDNPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +  G     K +LE R Q+SK      + + + +    +RV   +      TGR A    
Sbjct: 276 VATGK---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGV 331

Query: 719 NLQN-------------------------------IPIKTDLGQKIRRAFISPPTKKLIS 747
            LQN                               +  +  L Q +R  F +    +L  
Sbjct: 332 QLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAV 391

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTIN 805
           +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K   
Sbjct: 392 SDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSE 451

Query: 806 FSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------- 853
            ++ Y      L    A ++ I  +E    +  + +  P I  + +  +           
Sbjct: 452 LALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRK 511

Query: 854 ----------RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNI 882
                      + G+  +E   GR + Y                    ++N   S ++  
Sbjct: 512 THHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQVIEFMGLDLNRKWSKLKTY 571

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 572 GGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
 gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
          Length = 640

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/597 (14%), Positives = 194/597 (32%), Gaps = 113/597 (18%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY-GI----SMRGFEDIMLMSYVLDSGRSSHDI 505
             +K    ++   K   N +++++ L RY G+        ++  M+++  L    S    
Sbjct: 55  EDIKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKC 114

Query: 506 A---SIAQ----------KWLSYTRKEILKSRKSSIPIDKISDSQVQ---EHAIENSNVI 549
           A    +AQ          K+ S   K    +   +  + +    + Q    + +++  V 
Sbjct: 115 ALYLKLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVE 174

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           + +   L    + ++    Y            ++   G+ +D++L+          + SL
Sbjct: 175 MAIAEKLESVPVHDREWDYY--------VCDQRINDRGVALDKELVASALYCKDVKMESL 226

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
              +  L+G   N +S  QL   L     + +   TK       A   +++   +  + +
Sbjct: 227 SGELKALTGLD-NPNSRAQLLPWLKEH-GYSANGLTK-------ADVEQELKKAEGELKR 277

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK--- 726
            +    Q +       +++   +    +         ++ TGR A     +QN+      
Sbjct: 278 VLELKLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIK 337

Query: 727 -------------------------TDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
                                      L Q +R A ++        +D+S IE R++A  
Sbjct: 338 DLDDAREYVKKRDIDAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWF 397

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT-- 819
           A       VF     I+   A+++FG+ IE++  ++R+  K    ++ Y   P  L    
Sbjct: 398 AGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG 457

Query: 820 --QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------------RQNGYV 859
              + +   E    +  +      I ++ +  +                      + G++
Sbjct: 458 ALNMGVKEEELQGVVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKIRFRYRKGFL 517

Query: 860 ETIFGRRIHYDEINSP--------KSSIRNINERAAINA-----------PIQGSAADIT 900
                   +     +         K       +RA   A            +Q +A DI 
Sbjct: 518 FITLPSGRNLAYARAKVEPGDYGDKIIYEGQGDRAYFTAQETYGGKLVENIVQATARDIL 577

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
             A++ +  +         ++  +HDE + E     I   + ++  + E A    +N
Sbjct: 578 AEALLRIEAA------GYDVVFHVHDEAIIEGSGLIIEEVNDLMSQAPEWAEGLPLN 628


>gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9]
 gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9]
          Length = 640

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/599 (12%), Positives = 193/599 (32%), Gaps = 117/599 (19%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED------IMLMS----------- 493
             +K    ++   K   N +++++ L RY + +  + D       M+++           
Sbjct: 55  EDIKDMLFDDKVRKHAFNAQFERVCLSRY-LGLPYYLDPCQWQCTMVLAQELGLPSSLEK 113

Query: 494 ---YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ---EHAIENSN 547
              Y+  +        ++  ++ S   K    +   +  + + +  + Q   ++ I++  
Sbjct: 114 CALYLKLAQEKDTSGKNLI-RYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVV 172

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           V + +   L    + ++    Y            ++   G+ +D++L+          + 
Sbjct: 173 VEMAIAEKLESVPVHDREWDYY--------ACDQRINDRGVALDKELVASALYCKDVKME 224

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           SL   +  ++G   N +S  QL   L     + +   TK       A   +++   +  +
Sbjct: 225 SLSGELKAITGLA-NPNSRAQLLPWLKEH-GYSANGLTK-------ADVEQELKTAEGEL 275

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK- 726
            + +    Q +       +++   +    +         ++ TGR A     +QN+    
Sbjct: 276 KRVLELKLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNY 335

Query: 727 ---------------------------TDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                                        L Q +R A ++        +D+S IE R++A
Sbjct: 336 IKDLDDAREYVKKRDIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIA 395

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
             A       VF     I+   A+++FG+ IE++  ++R+  K    ++ Y   P  L  
Sbjct: 396 WFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQ 455

Query: 820 ----QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------------RQNG 857
                + +   E    +  +      I ++ +  +                      + G
Sbjct: 456 MGALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKLRFRYRKG 515

Query: 858 YVETIFGRRIHYDEINSPK-------------------SSIRNINERAAINAPIQGSAAD 898
           ++        +     +                      + +       +   +Q +A D
Sbjct: 516 FLFITLPSGRNLAYARAKVEPGDYGDKIIYEGQGDKAYFTAQETYGGKLVENIVQATARD 575

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I   A++ +  +         ++  +HDE + E     I   + ++  + E A    +N
Sbjct: 576 ILAEALLRIEAA------GYGVVFHVHDEAIIEGSGLTIEEVNDLMAQAPEWAEGLPLN 628


>gi|255021929|ref|ZP_05293938.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254968634|gb|EET26187.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 323

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 127/309 (41%), Gaps = 30/309 (9%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           +  +DG++  Y + Y TP LSR  HDG P   I G    + ++ +    E++     V++
Sbjct: 4   ILAIDGNNIGYASMY-TPALSRLSHDGQPTGGILGLVQSVIRIAKRY-PEAVP---IVLW 58

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLP------QLPLVRLATQAFGIPAIEIQGFEADD 119
           D  A  +R E+ P+YK NR   P+ +        Q P   L     G+  +     EADD
Sbjct: 59  DGHAA-WRKELCPEYKENRRDRPDKVAVAESWKRQQPWANLFLLQMGVLQMRAPDAEADD 117

Query: 120 IIATYT---YIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHV---IKKW 172
           +              G   +T++S D D  Q +S     +  + + ++ +  +     K 
Sbjct: 118 LAGRLAFAHERFADFGIDGMTLVSGDTDWWQALSRHVTWFTPITDGEMTLADLQTDKAKD 177

Query: 173 GIPPEKMVCL---QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-K 228
           G P   +      +A+ GD  DNIPG+  +G  TA  LL+ +  L+ I    +  + K K
Sbjct: 178 G-PFSGIEEYLLAKAMAGDPSDNIPGVQRVGIPTALKLLRLHEGLDGIAAAVASGRAKDK 236

Query: 229 RRENILEYAETARLSRKLVMLRTDVP--ITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
               I++  +    +R+++  R   P   T  +  L     +            F +L +
Sbjct: 237 ASAAIVDAIDLIERNRRIMDWRLAPPSAETTGIARLSFSPDDC---RDLCAHFGFDRLAH 293

Query: 287 RVATTYDCD 295
           R+    + D
Sbjct: 294 RLEPGGEWD 302


>gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 653

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 96/588 (16%), Positives = 202/588 (34%), Gaps = 135/588 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 62  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 116

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 117 DKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 176

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 177 EVEMTIANKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 226

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +              K T QD  +   G 
Sbjct: 227 SKEELLKQAKHITGLE-NPNSPTQLLAWLKAEQGLDIP-----NLQKKTVQDYLKRATGK 280

Query: 665 NPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN- 722
               K +LE R Q+SK      + + + +    +RV   +      TGR A     LQN 
Sbjct: 281 ---AKKMLEIRLQMSKTSVKKYNKMHDMMCND-ERVRGLFQFYGAGTGRWAGRGVQLQNL 336

Query: 723 ------------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
                                         +  +  L Q +R  F +    +L  +D+S 
Sbjct: 337 TKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSA 396

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIY 810
           IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y
Sbjct: 397 IEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGY 456

Query: 811 GISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------- 853
                 L    A ++ I  +E    +  + +  P I  + +  +                
Sbjct: 457 QGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH 516

Query: 854 -----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAA 887
                 + G+  +E   GR + Y                    ++N   S ++    +  
Sbjct: 517 GLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLV 576

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            N  +Q +A D+   ++  +  S        K++  +HDE++ E+P++
Sbjct: 577 EN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPKD 617


>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1417

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 103/271 (38%), Gaps = 23/271 (8%)

Query: 722  NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
               I  D    IRR F+S   +K   +  DYSQ+E+ +LA +     L       +D H 
Sbjct: 1100 CQNIPKDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHI 1159

Query: 780  MVAAEIFGVNIEKVSP----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
              A+   G+  +++            Q+RR AKT +F  +YG     L     IP  +  
Sbjct: 1160 KRASFFSGLPYDEIYKGYKRGIPEYVQLRRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLE 1219

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFV--RQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
              I++    +PGI ++    +      +N  + T F   +      S K+    +N    
Sbjct: 1220 ASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFVVELPTGIRMSFKTRDVVLNLPPV 1279

Query: 888  INAPIQGSAADITRRAMISVHKSLEDHKL---ATKMLLQIHDELVFEVPEEEITTASQII 944
             N PIQG  A++ +  +  V +             M+  +HD L  +   + +    +  
Sbjct: 1280 KNYPIQGFGAELAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDVLEECIRET 1339

Query: 945  VHSMEKA------CLPKINLRVPLKVNIKVS 969
               + +         P + L+VPL +  +  
Sbjct: 1340 RDILTEVHTYVAKAFPGVELKVPLNITTQCG 1370



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 76/197 (38%), Gaps = 26/197 (13%)

Query: 459 NEHFLKIGHNIK------YDKLVLHRYGISMRGFEDIMLMSYVLDSGR---SSHDIASIA 509
           NE  + + H+ K      +D   LHR+          ML  Y+L++ R    S++   +A
Sbjct: 511 NEFDVIVCHDAKQLLLFLWDDPELHRFFKRGGRVWCTMLAEYILEAQRCQTGSNNFRDVA 570

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLH 567
            K+   T    +      +    +  + ++ + I   + +     + R +L    E+   
Sbjct: 571 LKYGVMTPPSSV----LGVATVDLPLTFLRHYLIAAVDALST---VFREQLSKSCERSQV 623

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK------- 620
           +        +  ++ +E  GIQID +   + +  +   LL+ ++ +      +       
Sbjct: 624 ICIAHRMDSLLSMAAIENAGIQIDVEEAARQAQAVRNRLLATDKALSLYVPNEVPVDLQK 683

Query: 621 -FNLSSPKQLGDILFTK 636
            F+ +S + LG + F  
Sbjct: 684 LFDWNSLQHLGALFFGG 700


>gi|322830435|gb|EFZ33458.1| mitochondrial structure specific endonuclease I (SSE-1), putative
           [Trypanosoma cruzi]
          Length = 295

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/299 (26%), Positives = 127/299 (42%), Gaps = 42/299 (14%)

Query: 1   MQKENH-LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           M      + LVDG + ++R ++     S      PV+ +  F     + +  +      S
Sbjct: 1   MSVRERAVVLVDGPAVVHRWYH---RWSYTSKHTPVD-VKRFTITNARHIIATAHSFDPS 56

Query: 60  HFA--------------------VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99
           H A                    + FD      R E+YP YK NR +  E       + +
Sbjct: 57  HLAQHLLSPQVEYAHTPKHNKIIICFD-QGDGGRRELYPAYKENRAER-EHAAELSVIKK 114

Query: 100 LATQAFG---------IPAIEIQ----GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
           +A + F          +P ++ +      EADDIIAT     ++      ++S D DL Q
Sbjct: 115 VAIKVFTGEPKNTLIVLPDLDAKLKDVDAEADDIIATLALHNQQLKIPTVVMSHDYDLYQ 174

Query: 147 LVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
           L+        YD   +  +  + VI++ G+ P+ +   ++L GDS DNIPG+ GIG   A
Sbjct: 175 LIDEANKCYHYDIRTKHLVSEKGVIERVGVHPKLVRDYKSLAGDSSDNIPGVKGIGKTRA 234

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
             LL++YG+LE +L    + +     + +   A  A LSRKLV LR+   +    E  +
Sbjct: 235 LQLLKKYGDLEGVLTKGKKKQGGHLGDLLRAGAADAELSRKLVELRSCPKVLKVCEAFM 293


>gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
 gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
          Length = 653

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 96/588 (16%), Positives = 201/588 (34%), Gaps = 135/588 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 62  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 116

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 117 DKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 176

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 177 EVEMAIANKIKDFPVTAIEQTYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 226

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +              K T QD  + + G 
Sbjct: 227 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLKESTGK 280

Query: 665 NPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN- 722
               K +LE R Q+SK      + + + +    +RV   +      TGR A     LQN 
Sbjct: 281 ---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNL 336

Query: 723 ------------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
                                         +  +  L Q +R  F +    +L  +D+S 
Sbjct: 337 TKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSA 396

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIY 810
           IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y
Sbjct: 397 IEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGY 456

Query: 811 GISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------- 853
                 L    A ++ I  +E    +  + +  P I  + +  +                
Sbjct: 457 QGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH 516

Query: 854 -----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAA 887
                 + G+  +E   GR + Y                    ++N   S ++    +  
Sbjct: 517 GLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLV 576

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 577 EN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1473

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 103/271 (38%), Gaps = 23/271 (8%)

Query: 722  NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
               I  D    IRR F+S   +K   +  DYSQ+E+ +LA +     L       +D H 
Sbjct: 1156 CQNIPKDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHI 1215

Query: 780  MVAAEIFGVNIEKVSP----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
              A+   G+  +++            Q+RR AKT +F  +YG     L     IP  +  
Sbjct: 1216 KRASFFSGLPYDEIYKGYKRGIPEYVQLRRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLE 1275

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFV--RQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
              I++    +PGI ++    +      +N  + T F   +      S K+    +N    
Sbjct: 1276 ASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFVVELPTGIRMSFKTRDVVLNLPPV 1335

Query: 888  INAPIQGSAADITRRAMISVHKSLEDHKL---ATKMLLQIHDELVFEVPEEEITTASQII 944
             N PIQG  A++ +  +  V +             M+  +HD L  +   + +    +  
Sbjct: 1336 KNYPIQGFGAELAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDVLEECIRET 1395

Query: 945  VHSMEKA------CLPKINLRVPLKVNIKVS 969
               + +         P + L+VPL +  +  
Sbjct: 1396 RDILTEVHTYVAKAFPGVELKVPLNITTQCG 1426



 Score = 44.6 bits (104), Expect = 0.092,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 26/197 (13%)

Query: 459 NEHFLKIGHNIK------YDKLVLHRYGISMRGFEDIMLMSYVLDSGR---SSHDIASIA 509
           NE  + + H+ K      +D   LHR+          ML  Y+L++ R    S++   +A
Sbjct: 567 NEFDVIVCHDAKQLLLFLWDDPELHRFFKRGGRVWCTMLAEYILEAQRCQTGSNNFRDVA 626

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLH 567
            K+   T    +      +    +  + ++ + I   + +     + R +L+   E+   
Sbjct: 627 LKYGVMTPPSSV----LGVATVDLPLTFLRHYLIAAVDALST---VFREQLLKSCERSQV 679

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK------- 620
           +        +  ++ +E  GIQID +   + +  +   LL+ ++ +      +       
Sbjct: 680 ICIAHRMDSLLSMAAIENAGIQIDVEEAARQAQAVRNRLLATDKALSLYVPNEVPVDLQK 739

Query: 621 -FNLSSPKQLGDILFTK 636
            F+ +S + LG + F  
Sbjct: 740 LFDWNSLQHLGALFFGG 756


>gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           132]
          Length = 653

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/653 (16%), Positives = 221/653 (33%), Gaps = 140/653 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   +  I T + +          +    + +D    +    ID    ++ D T  +T  
Sbjct: 1   MKFMNIDIETYSSNDISK----CGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEP 56

Query: 447 KEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSS 502
                   K    +    K   N  +++  L +Y    +    +   M+     +S R  
Sbjct: 57  FHADYETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMV-----NSMRIG 111

Query: 503 H--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEH 541
               +  + +                ++ S   K   +   R  ++P   +    Q  ++
Sbjct: 112 LPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDY 171

Query: 542 AIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            I +  V + +   ++  P  ++E+   V+++           +   GI++ + L+   +
Sbjct: 172 CIRDVEVEMTIANKIKDFPVTVIEQAYWVFDQ----------HINDRGIKLSKSLMLGAN 221

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
               ++   L +    ++G + N +SP QL   L  +              K T QD  +
Sbjct: 222 VLDKQSKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLK 275

Query: 660 INCGDNPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +  G     K +LE R Q+SK      + + + +    +RV   +      TGR A    
Sbjct: 276 VATGK---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGV 331

Query: 719 NLQN-------------------------------IPIKTDLGQKIRRAFISPPTKKLIS 747
            LQN                               +  +  L Q +R  F +    +L  
Sbjct: 332 QLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAV 391

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTIN 805
           +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K   
Sbjct: 392 SDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSE 451

Query: 806 FSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------- 853
            ++ Y      L    A ++ I  +E    +  + +  P I  + +  +           
Sbjct: 452 LALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRK 511

Query: 854 ----------RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNI 882
                      + G+  +E   GR + Y                    ++N   S ++  
Sbjct: 512 THHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQVVEFMGLDLNRKWSKLKTY 571

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 572 GGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|169839370|ref|ZP_02872558.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 243

 Score =  139 bits (350), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 7/146 (4%)

Query: 17  YRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEI 76
           YR +YA P LS K DG P   + GF ++  ++++    +    +  V +D    + R  +
Sbjct: 7   YRGYYAMPGLSTK-DGTPTGGVFGFASLSLEIVKKLEPD----YVCVAWDKKHTSIRKRL 61

Query: 77  --YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
              P YKA R   P     Q+P++     AFG P  E   +EADDI+ T + +AE+ G  
Sbjct: 62  NILPTYKAGRKTPPSDFFNQIPILHDLLDAFGWPLYEFDDYEADDIMGTISLMAEQHGIE 121

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKE 160
             ++++D D++QLVSP T +Y   + 
Sbjct: 122 TCLVTSDLDMLQLVSPLTKVYAMKRG 147


>gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224]
 gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224]
          Length = 653

 Score =  139 bits (350), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 91/596 (15%), Positives = 193/596 (32%), Gaps = 133/596 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 53  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMI-----NS 107

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 108 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 167

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 168 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 217

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 218 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLKDDQGLDIPNLQKK-------T 269

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 270 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 328

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 329 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 388

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 389 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 448

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 449 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 508

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 509 SRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKL 568

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 569 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
 gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
          Length = 649

 Score =  139 bits (350), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 101/681 (14%), Positives = 220/681 (32%), Gaps = 148/681 (21%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + +  I T +     S  +    +     D         + D  V     + G+      
Sbjct: 3   TLAIDIETFSSVDLTSCGV---YTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAI 59

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVL--------- 496
           + +      E+   +K   N  ++++ L ++    +    +    + + +L         
Sbjct: 60  VNAI-----ESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGV 114

Query: 497 --------DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ---VQEHAIEN 545
                      R+  D+     ++ S   K    +   +  +   +  +    +++ + +
Sbjct: 115 GTALKLKVQKDRAGKDL----IRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRD 170

Query: 546 SNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             V  ++   +   P    E  L + ++          ++  TG+ +D  L+ Q     +
Sbjct: 171 VEVEREVRRKIERYPIPEKELKLWLLDQ----------KINDTGVLVDMALVNQAVKCDT 220

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +    LE     L+    N +S  QL + L  +      + +K             +   
Sbjct: 221 QYSSRLEVEAKTLTKLD-NPNSVAQLKEWLKEQ-GLEVESLSK-------QAVQNLLTDA 271

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
           D  I + +   ++++K       ++   +   ++    F    +  TGR A     +QN+
Sbjct: 272 DGEIERLLTLRQEMAKSSIAKYAAVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNL 331

Query: 724 P----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           P                            +   L + IR   I     + I AD+S IE 
Sbjct: 332 PQNHMKDLEIARMLVKQGRFKELELLYESVPIVLSELIRTVLIPEQGCRFIVADFSAIEA 391

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP-----QMRRHAKTINFSIIY 810
           R+LA +A    +   F+    I+   A+ +FGV +EK++      ++R   K    +  Y
Sbjct: 392 RVLAWLANEAWVLDTFKGHGKIYEQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGY 451

Query: 811 GISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------- 853
                 L    A ++ +  +E  D ++ +      I  +    +                
Sbjct: 452 QGGVNALKAMGADKMGLSDTELDDIVRAWRSANQRIVRFWYDVEKAAVLAVREREPQRVG 511

Query: 854 -----RQNG--YVETIFGRRIHYDE--------------------INSPKSSIRNINERA 886
                 +NG  ++    GRR+ Y                      IN      +    R 
Sbjct: 512 ILRFKVENGILFITLPSGRRLAYIRPKIEKDLRFDKDGLTYEGLGINKQWWRQKTYGGRL 571

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE--ITTASQII 944
             N  +QG+A D    AM+ V           K++  +HDE++ E+ + +  +     I+
Sbjct: 572 VEN-IVQGAARDCLAEAMLRVDAK------GYKIVGHVHDEIITEMRKGQGSLEELCGIM 624

Query: 945 VHSMEKACLPKINLRVPLKVN 965
              +         L +PL+ +
Sbjct: 625 GQEI------PWALGLPLRAD 639


>gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
          Length = 653

 Score =  139 bits (350), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 104/653 (15%), Positives = 220/653 (33%), Gaps = 140/653 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG-KNTL 445
           +   +  I T + +          +    + +D    +    ID    ++ D T   N  
Sbjct: 1   MKFMNIDIETYSSNDISK----CGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEP 56

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSS 502
                   K    +    K   N  +++  L ++    +    +   M+     +S R  
Sbjct: 57  FHADYETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIG 111

Query: 503 H--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEH 541
               +  + +                ++ S   K   +   R  ++P   +    Q  ++
Sbjct: 112 LPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDY 171

Query: 542 AIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            I +  V + +   ++  P  ++E+   V+++           +   GI++ + L+   +
Sbjct: 172 CIRDVEVEMTIANKIKDFPVTVIEQAYWVFDQ----------HINDRGIKLSKSLMLGAN 221

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
               ++   L +    ++G + N +SP QL   L  +              K T QD  +
Sbjct: 222 VLDKQSKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLK 275

Query: 660 INCGDNPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
           +  G     K +LE R Q+SK      + + + +    +RV   +      TGR A    
Sbjct: 276 VATGK---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGV 331

Query: 719 NLQN-------------------------------IPIKTDLGQKIRRAFISPPTKKLIS 747
            LQN                               +  +  L Q +R  F +    +L  
Sbjct: 332 QLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAV 391

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTIN 805
           +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K   
Sbjct: 392 SDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSE 451

Query: 806 FSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------- 853
            ++ Y      L    A ++ I  +E    +  + +  P I  + +  +           
Sbjct: 452 LALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRK 511

Query: 854 ----------RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNI 882
                      + G+  +E   GR + Y                    ++N   S ++  
Sbjct: 512 THHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQVVEFMGLDLNRKWSKLKTY 571

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 572 GGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|77918409|ref|YP_356224.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544492|gb|ABA88054.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelobacter carbinolicus DSM 2380]
          Length = 593

 Score =  139 bits (350), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 91/514 (17%), Positives = 191/514 (37%), Gaps = 53/514 (10%)

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSG-----RSSHDIASI 508
             F  +++ L + +    +       G  +  +   +   + L +      R    + ++
Sbjct: 55  APFPTDKNTLFVAYLASAEMTCFQALGWKLPAYVIDLYAEFCLLTNGFFLPRGKGLLGAL 114

Query: 509 A---QKWLS-YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           A   ++ L    +K++ +  +   P  +   + + ++   +   + +LW  + P L  ++
Sbjct: 115 AYFGEEILDAVEKKDMRELAQRGGPYTEDEKTDLLDYCQRDVLALERLWKHMVPHLDGDR 174

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
            L     L    +  V+++E+TGI ID   L    A++ +N   ++ ++ +  G  + + 
Sbjct: 175 SL-----LRGEYMKAVAKIEMTGIPIDTLAL----ADLRENWEVIKTSLIEELGAPYGVY 225

Query: 625 SPKQLGDILFT---KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
              +    LF    K K      T T + KT A   +++     P +K + E +QL    
Sbjct: 226 KNGKFKTDLFVQYLKNKGIPWPLTPTRKPKTDADTFKEM-AKCYPELKPLKELQQLLGKL 284

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
                     +    +  +    +  + TGR         N      L   +R+     P
Sbjct: 285 KLNK----LQVGTDGRNRY-LSGVFGSKTGR-----NQPSNSKCIFGLPSWMRKLVRPGP 334

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM---- 797
              L   DY Q E  I   ++    + Q + +  D +   A +  G      + +     
Sbjct: 335 GNGLAYLDYEQQEFGIAGALSGDEAMRQAYISG-DPYLAFAIQA-GAAPRGATKESHGDI 392

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R   K     + YG+   RLA  L I + EA   +  +   +    ++ +  +N     G
Sbjct: 393 RSRFKATALGVQYGMGQDRLAMNLNISKGEAKALLDLHRKTYARFWQWQQDIENKALIEG 452

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
            +  + G ++    I S         +R   N P+Q + A++ R A+    +        
Sbjct: 453 SIGGVLGWKMR---ITSK------TKDRTLANFPMQANGAEMLRLAVCLCAER------N 497

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
            K++  +HD LV E P   +  A  I + +M++A
Sbjct: 498 IKIVAMVHDALVIEAPIAGLEAAKSIAIQAMKEA 531


>gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
 gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
          Length = 653

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 104/653 (15%), Positives = 219/653 (33%), Gaps = 140/653 (21%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG-KNTL 445
           +   +  I T + +          +    + +D    +    ID    ++ D T   N  
Sbjct: 1   MKFMNIDIETYSSNDISK----CGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEP 56

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSS 502
                   K    +    K   N  +++  L ++    +    +   M+     +S R  
Sbjct: 57  FHADYETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIG 111

Query: 503 H--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEH 541
               +  + +                ++ S   K   +   R  ++P   +    Q  ++
Sbjct: 112 LPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDY 171

Query: 542 AIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            I +  V + +   ++  P  ++E+   V+++           +   GI++ + L+   +
Sbjct: 172 CIRDVEVEMTIANKIKDFPVTVIEQAYWVFDQ----------HINDRGIKLSKSLMLGAN 221

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
               ++   L +    ++G + N +SP QL   L  +              K T QD  +
Sbjct: 222 VLDKQSKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLK 275

Query: 660 INCGDNPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
              G     K +LE R Q+SK      + + + +    +RV   +      TGR A    
Sbjct: 276 EATGK---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGV 331

Query: 719 NLQN-------------------------------IPIKTDLGQKIRRAFISPPTKKLIS 747
            LQN                               +  +  L Q +R  F +    +L  
Sbjct: 332 QLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAV 391

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTIN 805
           +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K   
Sbjct: 392 SDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSE 451

Query: 806 FSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------- 853
            ++ Y      L    A ++ I  +E    +  + +  P I  + +  +           
Sbjct: 452 LALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRK 511

Query: 854 ----------RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNI 882
                      + G+  +E   GR + Y                    ++N   S ++  
Sbjct: 512 THHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTY 571

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 572 GGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
          Length = 653

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 100/618 (16%), Positives = 195/618 (31%), Gaps = 137/618 (22%)

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GI----SMRGFEDI 489
             Q    ++    EI   +     +++ LKI  N +++++ L ++ G+        +   
Sbjct: 40  DGQPVECEDLTISEIPDEIVAALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCT 99

Query: 490 MLMS-------------YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           M+ +               L+  +      +    + S   K   K+   +  + + +  
Sbjct: 100 MVHANELGLPASLGQCAKYLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPE 159

Query: 537 QVQ---EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           + Q   E+ I++ NV + +   L    + E    +Y         +  ++   G +ID +
Sbjct: 160 KWQTFIEYCIQDVNVEMAIANKLNRFPVPESEWKLYT--------LDQRINDRGAEIDHE 211

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL------FTKLKFPSGAKTKT 647
           L       ++    +    +  L+G + N +S  QL   L      F KL      K   
Sbjct: 212 LATAAIDIMADLSEAGLNEMKALTGLE-NPNSLAQLKKWLEEQGTPFEKLGKEVVLKA-- 268

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
                       +      + + +     LS   +     + N      +         +
Sbjct: 269 ----------LALGNLPENVAEVLKLRLSLSNSSTKKYLMMDNARCSDNRIHGILQFYGA 318

Query: 708 TMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAFIS 739
             TGR A     +QN+P                            +   L Q IR   ++
Sbjct: 319 NRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVEGIELMYENVPDTLKQLIRTGLVA 378

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS----- 794
               + I +D+S IE R++A  AK   +  VF     I+   AA++F +   +V+     
Sbjct: 379 KEGHRFIVSDFSAIEARVIAWYAKQDWVLDVFRTHGKIYEATAAQMFHLG--EVTDYDWK 436

Query: 795 ----PQMRRHAKTINFSIIYGISPFRLATQL----RIPRSEAADYIKRYFHRFPGIHEYI 846
                 MR+  K    ++ Y   P  L         I   E  D + R+      I  + 
Sbjct: 437 SHEGKDMRQRGKVATLALGYQGGPGALKAMGALENGIEEHELQDIVDRWRTANKRIKNFW 496

Query: 847 EKTKNFV--------------------------------RQNGYVETIFGRRIHYDEINS 874
            +T+  V                                R+  Y +       +   I  
Sbjct: 497 HETQKAVIDCLQNGGIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLKEGDYGPAIFY 556

Query: 875 PKSSIRNINERAAINA------PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
                +                 +Q +A D+   AM+ + K+         ++  +HDE 
Sbjct: 557 EGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKA------GYPIVFHVHDEA 610

Query: 929 VFEVPEEE--ITTASQII 944
           V EVPE E  I   ++I+
Sbjct: 611 VAEVPEGEKSIEEMNKIM 628


>gi|167945527|ref|ZP_02532601.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 110

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 4/111 (3%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
            NML +L+ + + E    H AV+FD P  +FRN++YPDYKANRP +PE L  Q+  +   
Sbjct: 1   INMLRRLIDDYQPE----HMAVVFDAPGGSFRNQLYPDYKANRPPMPEELRQQIEPLHQI 56

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
            +A G+P + I G EADD+I T    A + G    I + DKD+ QLV+   
Sbjct: 57  VRAMGLPLLMIPGVEADDVIGTLAQQAAQLGMQSLISTGDKDMAQLVNAQV 107


>gi|5616166|gb|AAD45654.1|AF124228_1 kinetoplast structure-specific endonuclease I [Crithidia
           fasciculata]
          Length = 297

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 41/281 (14%)

Query: 3   KENHLFLVDGSSFIYRAFY----------------------ATPLLSRKHDGLPVNAIAG 40
           +E  + L+DG + ++R ++                      A   ++  H   P +    
Sbjct: 4   RERAVVLIDGPAVVHRWYHRWSYSKERYGGDIDPKRFAIKNARFAIATAHSFDPSH---- 59

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR---PKIPEMLLPQLPL 97
             + L            A+   + FD      R +IY DYKANR    + PE+L+ +   
Sbjct: 60  LAHHLLSPQLEYAHTPKANKIIICFD-QGDGGRRQIYADYKANRLSVKRTPELLMMEKVA 118

Query: 98  VRLATQAFGIPAIEIQ---------GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148
            ++         + +            EADD+IAT     ++      ++S D DL QLV
Sbjct: 119 KKVFADEPAGTTLVVPDCDARLKTVNAEADDMIATLALFNQQNKVPTVVMSHDFDLYQLV 178

Query: 149 SP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
                   YD   +  +  + VI++ G+ P  +   +A+ GD+ DNIPG+ GIG   A  
Sbjct: 179 DDLHKCYNYDIRTKHLVSEKSVIERVGVHPRLIRDFKAMAGDASDNIPGMKGIGKVRACQ 238

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247
           LL++YG+L+ IL    + +  +  E + E A++A +SR+LV
Sbjct: 239 LLKKYGDLDGILARGPKNETGRLAELLEEGAKSAHISRQLV 279


>gi|156319560|ref|XP_001618134.1| hypothetical protein NEMVEDRAFT_v1g225484 [Nematostella vectensis]
 gi|156197578|gb|EDO26034.1| predicted protein [Nematostella vectensis]
          Length = 758

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 148/453 (32%), Gaps = 51/453 (11%)

Query: 537 QVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
            ++++   N+        +L  +L          Y+   K     +      G+QID + 
Sbjct: 34  DIEKYWAYNAKDTWHGARILVQQLRTAAPYTFANYKNKFKLTYPAL-YCNFEGLQIDMEK 92

Query: 595 LKQVSAEISKNLLSLEENIY-DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
             ++     K L +    ++   +   FN  S +Q+   ++           K+     T
Sbjct: 93  RNELRTASQKQLDTARSRLHVKFADPAFNPGSWQQVEKYIYNIFGASKPKIGKSK--SGT 150

Query: 654 AQDLEQINCGDNPIIK----NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709
            +         +P++     +IL +R+  K   TY D L         R+    +   T 
Sbjct: 151 DEKNLLAVAEQHPLLARLTTDILAYREAQKAIGTYYDFLRFQ-----GRLLWALNPFGTE 205

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           T R+A    +L       ++    ++  ++    +L  AD SQ E R  A+ A+   L  
Sbjct: 206 TERMACSASSLWCGTQVQNIPSYAKQMLVADDGYELFEADNSQSEGRTTAYCAQEPALIA 265

Query: 770 VFE-NSLDIHRMVAAEIFGVNIEKVSPQMRRHA-KTINFSIIYGISPFRLATQLRI---- 823
             E    D +R +    F +  E+V+   R    K I     Y +        + I    
Sbjct: 266 ALETAGRDFYRTLGTLFFNIPYEEVTDFFRNKVLKRIVHGTNYMMGGKTFTENIGIVVLY 325

Query: 824 -----------------------PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
                                   R  A   +  Y   FP I ++  + K  V   GY+ 
Sbjct: 326 ETAPKVGIKLVEIPTKDAEMEMTIRQFAKYLLDLYHEPFPRIRKWYGEIKTEVATTGYIV 385

Query: 861 TIF-GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED-HKLAT 918
           +     R  +  I    + +R++    + N  +     +I       ++  L    K   
Sbjct: 386 SPLGHVRKCFGNITRDHNMLRSLVAHQSQNLSV-----EILNIGFTRIYHELVLPDKGNI 440

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           ++  QIHD    ++ +      +  I+  M   
Sbjct: 441 RLKAQIHDSNFGQIRKGMRDYYAPRILECMNNP 473


>gi|283969415|gb|ADB54441.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969418|gb|ADB54442.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969420|gb|ADB54443.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969440|gb|ADB54453.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969448|gb|ADB54457.1| DNA polymerase I [Leptospira kirschneri]
          Length = 144

 Score =  139 bits (349), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/145 (39%), Positives = 92/145 (63%), Gaps = 2/145 (1%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     KT
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHKQAGGPFNIASTKELQKILFDNLKLRIVKKT 60

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +TG   +T  ++ +   G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+ 
Sbjct: 61  QTG--FSTDHEVLEELAGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLG 730
               TGRL+S +PNLQNIPI+   G
Sbjct: 119 TIAATGRLSSTDPNLQNIPIRDREG 143


>gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL]
 gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL]
          Length = 650

 Score =  139 bits (349), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 95/620 (15%), Positives = 198/620 (31%), Gaps = 135/620 (21%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 50  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NS 104

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 105 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 164

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 165 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 214

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 215 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLKDDQGLDIPNLQKK-------T 266

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 267 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 325

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 326 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 385

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 386 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 445

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 446 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 505

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 506 SRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKL 565

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P      
Sbjct: 566 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRGS--N 616

Query: 940 ASQIIVHSMEKACLPKINLR 959
             + I   M K       L 
Sbjct: 617 GLKEIETIMNKPADWAKGLN 636


>gi|139473888|ref|YP_001128604.1| phage DNA polymerase [Streptococcus pyogenes str. Manfredo]
 gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2]
 gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2]
          Length = 640

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 78/599 (13%), Positives = 192/599 (32%), Gaps = 117/599 (19%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED------IMLMS----------- 493
             +K    ++   K   N +++++ L RY + +  + D       M+++           
Sbjct: 55  EDIKDMLFDDKVRKHAFNAQFERVCLSRY-LGLPYYLDPCQWQCTMVLAQELGLPSSLEK 113

Query: 494 ---YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ---EHAIENSN 547
              Y+  +        ++  ++ S   K    +   +  + + +  + Q   ++ I++  
Sbjct: 114 CALYLKLAQEKDTSGKNLI-RYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVV 172

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           V + +   L    + ++    Y            ++   G+ +D++L+          + 
Sbjct: 173 VEMAIAEKLESVPVHDREWDYY--------ACDQRINDRGVALDKELVASALYCKDVKME 224

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
           SL   +  L+G   N +S  QL   L     +     TK       A   +++   +  +
Sbjct: 225 SLSGELKALTGLD-NPNSRAQLLPWLKEH-GYSVNGLTK-------ADVEQELKTAEGEL 275

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK- 726
            + +    Q +       +++   +    +         ++ TGR A     +QN+    
Sbjct: 276 KRVLELKLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNY 335

Query: 727 ---------------------------TDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                                        L Q +R A ++        +D+S IE R++A
Sbjct: 336 IKDLDDAREYVKKRDIDAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIA 395

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
             A       VF     I+   A+++FG+ IE++  ++R+  K    ++ Y   P  L  
Sbjct: 396 WFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQ 455

Query: 820 ----QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------------RQNG 857
                + +   E    +  +      I ++ +  +                      + G
Sbjct: 456 MGALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKLRFRYRKG 515

Query: 858 YVETIFGRRIHYDEINSPK-------------------SSIRNINERAAINAPIQGSAAD 898
           ++        +     +                      + +       +   +Q +A D
Sbjct: 516 FLFITLPSGRNLAYARAKVEPGDYGDKIVYEGQGDKAYFTAQETYGGKLVENIVQATARD 575

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           I   A++ +  +         ++  +HDE + E     I   + ++  + E A    +N
Sbjct: 576 ILAEALLRIEAA------GYGVVFHVHDEAIIEGSGLTIEEVNDLMAQAPEWAEGLPLN 628


>gi|134288333|ref|YP_001110496.1| 5'-3' exonuclease [Burkholderia vietnamiensis G4]
 gi|134132983|gb|ABO59693.1| 5'-3' exonuclease [Burkholderia vietnamiensis G4]
          Length = 323

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/309 (20%), Positives = 119/309 (38%), Gaps = 22/309 (7%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           H  L+DG+S  Y   Y+    +    G+ V AI+G    + + ++          F ++ 
Sbjct: 5   HFMLIDGNSVGYANQYS---HTLTSQGMQVQAISGTLRSISRRIREY-----PDFFPIVL 56

Query: 66  DYPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
                 +R ++Y DYK+NR               Q P +R+  +  G+  I     EADD
Sbjct: 57  WDGRAQWRFDLYADYKSNRLKSESSRAARAAYEKQQPYLRIMAEKLGLTQIVAPCAEADD 116

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE-- 177
           +      I    G  V  +++D + +Q         D   ++ I     ++      +  
Sbjct: 117 VGYQLALILLSMGHKVLFVTSDTEWLQGYQEGLSWLDPKTDKFIASASDMEAHVGTSDPR 176

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIK---QKKRRENI 233
             +  +AL GD+ D I G+P IG  TA  +  ++ G+++    +A   K   +KK   ++
Sbjct: 177 AYIEAKALAGDTSDTIAGVPRIGITTALKVFAQFGGSMDAFYAHAEAGKVDLKKKTLNSL 236

Query: 234 LEYAETARLSR--KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
                 A  +R  KL+ L     +T     +  E  +      + +   F+ ++  V   
Sbjct: 237 ASAEGRAIFARNMKLMDLAAAPKLTESEIVVSREPVDHIVFTDWAEHFSFSSILKNVGEF 296

Query: 292 YDCDAANIE 300
                 + E
Sbjct: 297 ISPFERSTE 305


>gi|302806216|ref|XP_002984858.1| hypothetical protein SELMODRAFT_46232 [Selaginella moellendorffii]
 gi|300147444|gb|EFJ14108.1| hypothetical protein SELMODRAFT_46232 [Selaginella moellendorffii]
          Length = 273

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 16/239 (6%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYP-AVTFRNEIYPDYKANRPKIPE---------MLLP 93
            LW +    R+  +      +FD      +R +I P YKA R K             L  
Sbjct: 27  FLWWMRAFLRRIVLDDPVIAVFDGEFGNDYRRKILPSYKAGRRKFKPLDPSFKWTRGLEA 86

Query: 94  QLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
                +   +   IP +++   EADD+IAT             I S DKD  QLVS    
Sbjct: 87  SFSRFQCFLRQCNIPVVKVDNAEADDVIATLARQVNDRSLKAVIASPDKDFKQLVSENVE 146

Query: 154 LYDT----VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           L        +     ++  +++    P   + L+ L GD+ D +PG+PG G KTA  L++
Sbjct: 147 LLIPFADLRRWSFYTVKDYVEQHKCEPVIELGLRCLLGDAADGVPGVPGFGRKTALKLMR 206

Query: 210 EYGNLENIL--INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           ++G+LEN+L       + +   ++ + E++     + +++ LR D+ + +P+E  +  D
Sbjct: 207 KHGSLENLLSAAAIRTVGKPYIQDALKEHSVLLEKNLEVLSLRRDINVELPVEWCLSRD 265


>gi|284991224|ref|YP_003409778.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
 gi|284064469|gb|ADB75407.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
          Length = 552

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/488 (16%), Positives = 162/488 (33%), Gaps = 90/488 (18%)

Query: 529 PIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           P+D  +D    V EH  + + V                 L +    +     V ++M   
Sbjct: 115 PLDDPADTLDPVAEHGRQQAAVAAS---------AEPHRLALLLAAESSGALVAAEMTHA 165

Query: 587 GIQIDQDLLKQVSAEI----------SKNLLSLEENIYD-LSGEKFNLSSPKQLGDILFT 635
           G+    D+  ++  E+             L +L + +   L     N  SP         
Sbjct: 166 GLPWRADVHARLLTELLGPRPASGARPAVLEALAQEVRAALRAPGLNPDSP--------- 216

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
                  A  +             +   D+P++  +LE+++L+++ +    +  +    R
Sbjct: 217 ---GALLAALQAAGLPVEDTRSWTLEQLDHPVVGPLLEYKRLARLLTANGWAWLDTWV-R 272

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
             R  +++     +TGR AS      ++P       ++R A ++    +L+ AD +Q+E 
Sbjct: 273 DGRFRSWFVPGGVVTGRWASNGGGALSVP------TQVRPAAVADDGWRLVVADVAQLEP 326

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LA ++    + +    +     MVAA          + + R  AK      +YG    
Sbjct: 327 RVLAGMSGDDAMAEAARAADLYEGMVAAG---------TVETRAQAKVAILGAMYGA--- 374

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI--- 872
                    R E+   + R   R+P     +E+      +   V T+ GR          
Sbjct: 375 --------TRGESGRIMPRLARRYPRAIGLVEQAARAGERGDVVHTLLGRGSPRPTGAWA 426

Query: 873 -------------NSP--KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL- 916
                         SP  +   R    R   N  +QG+ A+     +  +   L      
Sbjct: 427 ERAVALGEPAEVSGSPEERDRARRAWGRFTRNFVVQGTGAEWALCWLADLRNRLWRLGGT 486

Query: 917 -----ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNIKV 968
                   ++  +HDE+V   PE      ++ +  +   A         +  PL V++  
Sbjct: 487 GPLEQRPHLVFFLHDEVVVHTPEPLADAVAEEVRAAAATAGRLLFGGFPVDFPLDVSVVA 546

Query: 969 SNNWQEEN 976
             +W +  
Sbjct: 547 --SWADAG 552


>gi|289806032|ref|ZP_06536661.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 142

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/143 (48%), Positives = 92/143 (64%), Gaps = 1/143 (0%)

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             +L + S EI+  L  LE+  +D++GE FNLSS KQL  ILF K       KT  G   
Sbjct: 1   PAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPS 60

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
           T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y  A T TG
Sbjct: 61  TSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATG 119

Query: 712 RLASLEPNLQNIPIKTDLGQKIR 734
           RL+S +PNLQNIP++ + G++IR
Sbjct: 120 RLSSTDPNLQNIPVRNEEGRRIR 142


>gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 653

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 96/588 (16%), Positives = 200/588 (34%), Gaps = 135/588 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 62  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 116

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 117 DKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 176

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 177 EVEMTIAHKIKDFPVTAIEQTYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 226

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +              K T QD  +   G 
Sbjct: 227 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLKEATGK 280

Query: 665 NPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN- 722
               K +LE R Q+SK      + + + +    +RV   +      TGR A     LQN 
Sbjct: 281 ---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNL 336

Query: 723 ------------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
                                         +  +  L Q +R  F +    +L  +D+S 
Sbjct: 337 TKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSA 396

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIY 810
           IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y
Sbjct: 397 IEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGY 456

Query: 811 GISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------- 853
                 L    A ++ I  +E    +  + +  P I  + +  +                
Sbjct: 457 QGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH 516

Query: 854 -----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAA 887
                 + G+  +E   GR + Y                    ++N   S ++    +  
Sbjct: 517 GLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLV 576

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 577 EN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 650

 Score =  138 bits (348), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 91/596 (15%), Positives = 193/596 (32%), Gaps = 133/596 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 50  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NS 104

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 105 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 164

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 165 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 214

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 215 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLKDDQGLDIPNLQKK-------T 266

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 267 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 325

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 326 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 385

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 386 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 445

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 446 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 505

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 506 SRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKL 565

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 566 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 614


>gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 653

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 91/596 (15%), Positives = 193/596 (32%), Gaps = 133/596 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 53  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NS 107

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 108 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 167

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 168 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 217

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 218 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLKDDQGLDIPNLQKK-------T 269

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 270 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 328

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 329 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 388

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 389 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 448

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 449 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 508

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 509 SRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKL 568

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 569 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|119717066|ref|YP_924031.1| 5'-3' exonuclease [Nocardioides sp. JS614]
 gi|119537727|gb|ABL82344.1| 5'-3' exonuclease [Nocardioides sp. JS614]
          Length = 289

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 13/228 (5%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           ML ++L+   +           D    + R + YP YKA R +    L+ QL        
Sbjct: 1   MLRQILEAIDR-FAPDAVLFGLDDRRTSVREQAYPAYKAGRAEKDPALVDQLERAAGLLD 59

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK- 162
           A G+  +   G EADD+ A+    AE+ G++  +I++D+D    +S  T +   +     
Sbjct: 60  ALGMLTVTPDGLEADDVNASAATWAEQHGWSCVLITSDRDAFAHISEHTQVLRLISGGIN 119

Query: 163 ----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
               ++   +   +G+  E  +   AL GD  DN+PG+PGIG K A  LL E G++  + 
Sbjct: 120 GSPLLNPARLRTMYGVAAEHYLEYAALRGDPSDNLPGVPGIGEKIAPFLLSEMGSMRAVW 179

Query: 219 INASRIKQKKRRENILEYAET-------ARLSRKLVMLRTDVPITIPL 259
            +            +  Y E        A + +KL            L
Sbjct: 180 ADIDHCGGATLVATLDSYCEEVGRPRIGAAVLKKLATPAARERFEFNL 227


>gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
 gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
          Length = 650

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 91/596 (15%), Positives = 193/596 (32%), Gaps = 133/596 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 50  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NS 104

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 105 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 164

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 165 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 214

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 215 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLKDDQGLDIPNLQKK-------T 266

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 267 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 325

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 326 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 385

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 386 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 445

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 446 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 505

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 506 SRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKL 565

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 566 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 614


>gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
 gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
          Length = 653

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 91/596 (15%), Positives = 193/596 (32%), Gaps = 133/596 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 53  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NS 107

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 108 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 167

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 168 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 217

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 218 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLKDDQGLDIPNLQKK-------T 269

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 270 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 328

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 329 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 388

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 389 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 448

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 449 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 508

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 509 SRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKL 568

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 569 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
 gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
          Length = 653

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 96/616 (15%), Positives = 198/616 (32%), Gaps = 138/616 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 53  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NS 107

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 108 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 167

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 168 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 217

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 218 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLKDDQGLDIPNLQKK-------T 269

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 270 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 328

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 329 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 388

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 389 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 448

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 449 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 508

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 509 SRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKL 568

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE---- 935
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P      
Sbjct: 569 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRGSNGL 621

Query: 936 -EITTASQIIVHSMEK 950
            EI T     V   E 
Sbjct: 622 KEIETIMNKPVEWAEG 637


>gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
 gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
          Length = 653

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 91/596 (15%), Positives = 193/596 (32%), Gaps = 133/596 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 53  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NS 107

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 108 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 167

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 168 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 217

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 218 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLKDDQGLDIPNLQKK-------T 269

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 270 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 328

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 329 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 388

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 389 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 448

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 449 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 508

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 509 SRKTHHTHGLRFYIKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKL 568

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 569 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 643

 Score =  138 bits (347), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 91/582 (15%), Positives = 194/582 (33%), Gaps = 125/582 (21%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIML-MSYVLDSGRSSH 503
           +EI  ++    ++   +K  +N  ++   L+  GI   +  ++  M+   Y+        
Sbjct: 53  EEIPHFILTALQDMEVIKHAYNAAFEWYCLNCAGIKTPLDQWQCTMVHAMYLSLP----- 107

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP----- 558
             A +A    +    E    +KS++    I    V+ +           W   +      
Sbjct: 108 --AGLANTGEALGIAE--DKKKSAVGKQLIRYFCVKPY-----KPDAVKWKAFKEYNRQD 158

Query: 559 ---KLIVEKLLHVYERLDKPMID--VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
              ++ +E  L  +   +           M   G+++D +L+        +    L    
Sbjct: 159 VVSEMEIENRLSGFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEA 218

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
             L+  + N +SP QL + +  +        T+    ++  ++   +       ++ +LE
Sbjct: 219 VRLTQLE-NPNSPTQLLNWVNAQG--YPLENTQKATIESALKEDLPLK------VRRVLE 269

Query: 674 W-RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-------- 724
             +QL K      +++ N I +  +         ++ TGR +     +QN+P        
Sbjct: 270 IRQQLGKTSVKKYEAMTNTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYLEPLA 329

Query: 725 --------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
                               I   L Q IR AFI     + + AD+S IE R++A +AK 
Sbjct: 330 ETRECVKRQDYETLKLLFDSIPDTLSQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKE 389

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSP-----QMRRHAKTINFSIIYGISPFRL-- 817
           T + +VF     I+   A+++F V IEK++       +R+  K    ++ Y      L  
Sbjct: 390 TWVQEVFATHGKIYEATASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALIS 449

Query: 818 --ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY----------------- 858
             A ++ +   E  + + R+      I        ++  +                    
Sbjct: 450 MGALKMGLSEEELPEIVTRWRAANQRIVALWSAVGSYALRTVRDGRARQVNGLIFRMEQD 509

Query: 859 ---------VETIFGRRIHY--DEI-----------------NSPKSSIRNINERAAINA 890
                    +E    R++ Y    I                  + K    +      +  
Sbjct: 510 LKHGLRFLTIELPSKRKLFYCKPYIGLNQFGGESLYFYTQNQTTKKWEESSTFGGKLVEN 569

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            +QG A D     +  +           +++  +HDE++ + 
Sbjct: 570 IVQGIARDCLCETLDRITSK------GYRIVFHVHDEVIVDA 605


>gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1404

 Score =  138 bits (347), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 103/271 (38%), Gaps = 23/271 (8%)

Query: 722  NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
               I  D    IRR F+S   +K   +  DYSQ+E+ +LA +     L       +D H 
Sbjct: 1087 CQNIPKDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHI 1146

Query: 780  MVAAEIFGVNIEKVSP----------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829
              A+   G+  +++            Q+RR AKT +F  +YG     L     IP  +  
Sbjct: 1147 KRASFFSGLPYDEIYKGYKRGIPEYVQLRRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLE 1206

Query: 830  DYIKRYFHRFPGIHEYIEKTKNFV--RQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
              I++    +PGI ++    +      +N  + T F   +      S K+    +N    
Sbjct: 1207 ASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFVVELPTGIRISFKTRDVVLNLPPV 1266

Query: 888  INAPIQGSAADITRRAMISVHKSLEDHKL---ATKMLLQIHDELVFEVPEEEITTASQII 944
             N PIQG  A++ +  +  V +             M+  +HD L  +   + +    +  
Sbjct: 1267 KNYPIQGFGAELAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDVLEECIRET 1326

Query: 945  VHSMEKA------CLPKINLRVPLKVNIKVS 969
               + +         P + L+VPL +  +  
Sbjct: 1327 RDILTEVHTYVAKAFPGVELKVPLNITTQCG 1357



 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 26/197 (13%)

Query: 459 NEHFLKIGHNIK------YDKLVLHRYGISMRGFEDIMLMSYVLDSGR---SSHDIASIA 509
           NE  + + H+ K      +D   LHR+          ML  Y+L++ R    S++   +A
Sbjct: 498 NEFDVIVCHDAKQLLLFLWDDPELHRFFKRGGRVWCTMLAEYILEAQRCQTGSNNFRDVA 557

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLH 567
            K+   T    +      +    +  + ++ + I   + +     + R +L+   E+   
Sbjct: 558 LKYGVMTPPSSV----LGVATVDLPLTFLRHYLIAAVDALST---VFREQLLKSCERSQV 610

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK------- 620
           +        +  ++ +E  GIQID +   + +  +   LL+ ++ +      +       
Sbjct: 611 ICIAHRMDSLLSMAAIENAGIQIDVEEAARQAQAVRNRLLATDKALSLYVPNEVPVDLQK 670

Query: 621 -FNLSSPKQLGDILFTK 636
            F+ +S + LG + F  
Sbjct: 671 LFDWNSLQHLGALFFGG 687


>gi|283969363|gb|ADB54415.1| DNA polymerase I [Leptospira interrogans]
 gi|283969375|gb|ADB54421.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969377|gb|ADB54422.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969379|gb|ADB54423.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969381|gb|ADB54424.1| DNA polymerase I [Leptospira interrogans]
 gi|283969383|gb|ADB54425.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969385|gb|ADB54426.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969387|gb|ADB54427.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969389|gb|ADB54428.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969391|gb|ADB54429.1| DNA polymerase I [Leptospira interrogans serovar IH CF1]
 gi|283969393|gb|ADB54430.1| DNA polymerase I [Leptospira interrogans]
 gi|283969395|gb|ADB54431.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969399|gb|ADB54433.1| DNA polymerase I [Leptospira interrogans]
 gi|283969401|gb|ADB54434.1| DNA polymerase I [Leptospira interrogans]
 gi|283969403|gb|ADB54435.1| DNA polymerase I [Leptospira interrogans]
 gi|283969405|gb|ADB54436.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969407|gb|ADB54437.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969422|gb|ADB54444.1| DNA polymerase I [Leptospira interrogans]
 gi|283969424|gb|ADB54445.1| DNA polymerase I [Leptospira interrogans]
 gi|283969426|gb|ADB54446.1| DNA polymerase I [Leptospira interrogans]
 gi|283969428|gb|ADB54447.1| DNA polymerase I [Leptospira interrogans]
 gi|283969430|gb|ADB54448.1| DNA polymerase I [Leptospira interrogans]
 gi|283969432|gb|ADB54449.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969436|gb|ADB54451.1| DNA polymerase I [Leptospira interrogans]
 gi|283969438|gb|ADB54452.1| DNA polymerase I [Leptospira interrogans]
 gi|283969444|gb|ADB54455.1| DNA polymerase I [Leptospira interrogans]
 gi|283969446|gb|ADB54456.1| DNA polymerase I [Leptospira interrogans]
 gi|283969450|gb|ADB54458.1| DNA polymerase I [Leptospira interrogans]
 gi|283969452|gb|ADB54459.1| DNA polymerase I [Leptospira interrogans]
 gi|283969454|gb|ADB54460.1| DNA polymerase I [Leptospira interrogans]
          Length = 144

 Score =  138 bits (347), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/145 (39%), Positives = 92/145 (63%), Gaps = 2/145 (1%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     KT
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDDLKLRIVKKT 60

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +TG   +T  ++ +   G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+ 
Sbjct: 61  QTG--FSTDHEVLEELAGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLG 730
               TGRL+S +PNLQNIPI+   G
Sbjct: 119 TIAATGRLSSTDPNLQNIPIRDREG 143


>gi|326424982|ref|YP_004286204.1| putative DNA polymerase [Pseudomonas phage phi15]
 gi|325048386|emb|CBZ41999.1| putative DNA polymerase [Pseudomonas phage phi15]
          Length = 722

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 129/398 (32%), Gaps = 46/398 (11%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI----IKNILEWRQ 676
           F+ +S   +  +L      P+   T  G      + LE +   D P+    I  I  +  
Sbjct: 329 FSPTSRDHIQKVLKDAGWEPT-EFTDKGAPIVDDETLEGVTVDD-PVKQAAITLIQRYLM 386

Query: 677 LSKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQK 732
           + K     A+       +       +H   +     TGR     PN+  +P  K+  G +
Sbjct: 387 IQKRIGQLAEGKKAWLLYCETEDGFIHGSINPNGAGTGRATHSHPNMGQVPSAKSPYGPE 446

Query: 733 IRRAFISP-----PTK---KLISADYSQIELRILAHIAKITPLYQVFEN--SLDIH--RM 780
            R  F +      P       +  D S +ELR L H           E   + D+H    
Sbjct: 447 CRELFGAAYASHLPGWEAVVQVGRDASGLELRCLGHFGAKFDGGAYVEQVLNGDVHWANA 506

Query: 781 VAAEIFGVNI----EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
           VAA I    +    ++   + R +AKT  ++ +YG    ++   +    S      K + 
Sbjct: 507 VAAGIAKDPVRIKGDEQHDRWRDNAKTFIYAFLYGAGNGKIGQIVGGGESHGKALKKSFL 566

Query: 837 HRFPGIHEYIEKTKNF--VRQNGYVETIF----GRRIHYDEINSPKSSIRNINERAAINA 890
              P I    +         Q     T       +R     ++     IR+    +A+N 
Sbjct: 567 ENTPVIKSLSDSLIEALVAEQKWNNVTKRFDLKWKRKWIKGLDGRMVHIRS--PHSALNF 624

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKM------------LLQIHDELVFEVPEEEIT 938
            +QG+ A I +  ++   + L +  L                +  +HDEL       EI 
Sbjct: 625 LLQGAGAVICKAWVVETERLLMEQGLHHGWYREDGTPGDFCFMAWVHDELQIAARNPEIA 684

Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                      +    +  +R  L         W+E +
Sbjct: 685 EVVHAACQQAIRNIGEEFGIRCQLDTEGHTGPTWRECH 722



 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 71/223 (31%), Gaps = 56/223 (25%)

Query: 448 EILSYLKKFFENEHFLKIGHN-IKYDKLVLH---------RYGISMRGFEDIMLMSYVLD 497
           + +  L+        L + HN IKYD   L             I  +   D +++S +L 
Sbjct: 42  DYIKALEAEAAKPDGLIVFHNGIKYDIPALAKIKKSLTGKNLNIPRQKVLDTLVLSRLLH 101

Query: 498 SGR------------------SSHDIASIAQKWLSYTRKEILKSRKSSIP------IDKI 533
           +                     SH + +   + L   + E     K  +       +D +
Sbjct: 102 ANLKNTDAGLLRKGILPGDRYGSHSLEAWGYR-LGEMKGEYKDDFKRDLAARGETYVDGM 160

Query: 534 SDSQVQE----HAIENSNVILQLWLLLRPKLIV------------EKLLHVYE--RLDKP 575
                 E    +  ++  V L+   LLR  L              E+ +      RL+  
Sbjct: 161 EWEHFNEPMYDYCEQDVRVTLK---LLRKFLADKFYFGSDVAPNGEQWMGGIRAVRLEHE 217

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
               ++QME  G   ++   +++  E++     L   + +  G
Sbjct: 218 AAWTLAQMERNGFPFNKQKAERLYQELAAERSDLLVKLIETFG 260


>gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11]
          Length = 650

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 97/588 (16%), Positives = 201/588 (34%), Gaps = 135/588 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 59  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 113

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIP-IDKISDSQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P  D     Q  ++ I + 
Sbjct: 114 DKVGEVLRLQSQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDV 173

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 174 EVEMTIANKIKDFPVTEIEQAYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 223

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +              K T QD  +   G 
Sbjct: 224 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLKEATGK 277

Query: 665 NPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN- 722
               K +LE R Q+SK      + + + +    +RV   +      TGR A     LQN 
Sbjct: 278 ---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNL 333

Query: 723 ------------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
                                         +  +  L Q +R  F +    +L  +D+S 
Sbjct: 334 TKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSA 393

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIY 810
           IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y
Sbjct: 394 IEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGY 453

Query: 811 GISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------- 853
                 L    A ++ I  +E    +  + +  P I  + +  +                
Sbjct: 454 QGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH 513

Query: 854 -----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAA 887
                 + G+  +E   GR + Y                    ++N   S ++    +  
Sbjct: 514 GLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLV 573

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            N  +Q +A D+   ++  +  S+       K++  +HDE++ E+P  
Sbjct: 574 EN-IVQATARDLLAISIARLEASV------FKIVGHVHDEVIVEIPRG 614


>gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047]
 gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047]
          Length = 640

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 79/602 (13%), Positives = 193/602 (32%), Gaps = 123/602 (20%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED------IMLMS----------- 493
             +K    ++   K   N +++++ L RY + +  + D       M+++           
Sbjct: 55  EDIKDMLFDDKVRKHAFNAQFERVCLSRY-LGLPYYLDPCQWQCTMVLAQELGLPSSLEK 113

Query: 494 ---YV---LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ---EHAIE 544
              Y+    +   S  ++     ++ S   K    +   +  + + +  + Q   ++ I+
Sbjct: 114 CALYLKLVQEKDTSGKNL----IRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQ 169

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           +  V + +   L    + ++    Y            ++   G+ +D++L+         
Sbjct: 170 DVVVEMAIAEKLESVPVHDREWDYY--------ACDQRINDRGVALDKELVASALYCKDV 221

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            + SL   +  L+G   N +S  QL   L     +     TK       A   +++   +
Sbjct: 222 KMESLSGELKALTGLD-NPNSRAQLLPWLKEH-GYSVNGLTK-------ADVEQELKTAE 272

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
             + + +    Q +       +++   +    +         ++ TGR A     +QN+ 
Sbjct: 273 GELKRVLELKLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLA 332

Query: 725 IK----------------------------TDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                           L Q +R A ++        +D+S IE R
Sbjct: 333 RNYIKDLDDAREYVKKRDIDAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEAR 392

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816
           ++A  A       VF     I+   A+++FG+ IE++  ++R+  K    ++ Y   P  
Sbjct: 393 VIAWFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGA 452

Query: 817 LAT----QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------------R 854
           L       + +   E    +  +      I ++ +  +                      
Sbjct: 453 LKQMGALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKLRFRY 512

Query: 855 QNGYVETIFGRRIHYDEINSPK-------------------SSIRNINERAAINAPIQGS 895
           + G++        +     +                      + +       +   +Q +
Sbjct: 513 RKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYEGQGDKAYFTAQETYGGKLVENIVQAT 572

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           A DI   A++ +  +         ++  +HDE + E     I   + ++  + E A    
Sbjct: 573 ARDILAEALLRIEAA------GYGVVFHVHDEAIIEGSGLTIEEVNDLMAQAPEWAEGLP 626

Query: 956 IN 957
           +N
Sbjct: 627 LN 628


>gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 662

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 96/617 (15%), Positives = 197/617 (31%), Gaps = 120/617 (19%)

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            ++  D         + D  V     +  ++   + +         + + LK   N  ++
Sbjct: 32  YVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVVHD-----LTDPNVLKTAFNAAFE 86

Query: 473 KLVLHRY-GISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
           +  + ++ GI      +    + +  L  G   + +  +A+      +K+     K+ I 
Sbjct: 87  RTCIKKHFGIKCNPSQWRCTAVWALAL--GLPGY-LEGVAEVLKLEAQKDTRG--KNLIK 141

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY------ERLDKPMID----- 578
              +     + +     N      +    +     +  V        +L++  +      
Sbjct: 142 YFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREVRRKLERFPVPQHEWD 201

Query: 579 ---VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
              +  ++   GIQ+D  L  Q      +    L +   D++  + N +S  +L + L  
Sbjct: 202 LWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDITQLE-NPNSLTKLKEWLAE 260

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
           +         K             +   D    + +   ++L K      +++   I   
Sbjct: 261 QGLETPDGLGKEHMPT------LLVQAPDEDTRRVLQIRQELGKTSVDKYNAMARSICAD 314

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIP----------------------------IKT 727
            +         +  TGR A     +QN+P                            + +
Sbjct: 315 GRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREVLKSGDFDLLEMLYGALPS 374

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            L Q IR  FI  P  + I +D+S IE RI+A +A    +  VF++   I+   A+++F 
Sbjct: 375 VLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVLNVFQDHGKIYEAAASQMFK 434

Query: 788 VNIEKV-----SPQMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHR 838
           V +E +     + ++R   K    +  Y   P  L    A +  IP  E    +KR+   
Sbjct: 435 VPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMGALKSGIPEEELPGIVKRWRKA 494

Query: 839 FPGIHEYIEKTKNFV----RQNGYVETIFGRRIHY------------------------- 869
            P I +     +       R+   V    G +  Y                         
Sbjct: 495 NPRIVKLWYAAEEAALTAVREKRTVPLAHGVKYRYKSGTLFADLPSGRSLAYVNPRIKPD 554

Query: 870 -------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
                        D+I     S R    R   N  +Q  A D    +++ +  +      
Sbjct: 555 PNFGKDGLVFDGMDQIKKKWMSHRTYGGRLVEN-LVQAIARDCLAESLMRLDAA------ 607

Query: 917 ATKMLLQIHDELVFEVP 933
             + ++ +HDE+V +VP
Sbjct: 608 EYRTVMHVHDEVVLDVP 624


>gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 653

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 91/596 (15%), Positives = 193/596 (32%), Gaps = 133/596 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 53  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NS 107

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 108 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 167

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 168 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 217

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 218 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLKNDQGLDIPNLQKK-------T 269

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 270 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 328

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 329 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 388

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 389 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 448

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 449 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 508

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 509 SRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKL 568

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 569 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
          Length = 653

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 90/587 (15%), Positives = 192/587 (32%), Gaps = 133/587 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 62  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 116

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 117 DKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 176

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 177 EVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 226

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L      ++G + N +SP QL   L            K           E +    
Sbjct: 227 SKEELLNQAKHITGLE-NPNSPTQLLAWLKDDQGLDIPNLQKK-------TVQEYLKEAT 278

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN-- 722
               K +    Q+SK      + + + +    +RV   +      TGR A     LQN  
Sbjct: 279 GKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNLT 337

Query: 723 -----------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                                        +  +  L Q +R  F +    +L  +D+S I
Sbjct: 338 KHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAI 397

Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIYG 811
           E R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y 
Sbjct: 398 EARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQ 457

Query: 812 ISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------------- 853
                L    A ++ I  +E    +  + +  P I  + +  +                 
Sbjct: 458 GGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG 517

Query: 854 ----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAAI 888
                + G+  +E   GR + Y                    ++N   S ++    +   
Sbjct: 518 LRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVE 577

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 578 N-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|226529211|ref|NP_001146806.1| hypothetical protein LOC100280411 [Zea mays]
 gi|219888829|gb|ACL54789.1| unknown [Zea mays]
          Length = 361

 Score =  137 bits (346), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 24/242 (9%)

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              + D      +R  + P YKA+R +   +       V    +   +  + + G+EADD
Sbjct: 117 VVAVLDGDGGNEYRRRLLPSYKAHRAR--GVGTGADTRVVDVLRQCNVAVVRVDGYEADD 174

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP 175
           ++AT T    ++G+ V I S DKD  QL+S    L   +    +     + H + ++   
Sbjct: 175 VVATLTEQVLQKGYRVAIASPDKDFKQLISDDVQLVVPIPEIGRWSFYTLRHYVAQYKCD 234

Query: 176 PEKMVCLQ---------ALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENIL--IN 220
           P   + L             GD  D +PG    +PG G KTA  LLQ++G+LEN+L    
Sbjct: 235 PTADLSLIMNWKLCCTGCFMGDEADGVPGIQHLVPGFGRKTAVKLLQKHGSLENLLNTAA 294

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKA 278
              + +   ++ + ++A+  R + +++ L+ DV +      L   +   +   L  FL  
Sbjct: 295 IRTVGRGYAQDALTKHADYLRKNYQVLSLKRDVNVQFDDSWLSPRNTCSDANVLADFLLK 354

Query: 279 LE 280
           L 
Sbjct: 355 LS 356


>gi|283969353|gb|ADB54410.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
 gi|283969355|gb|ADB54411.1| DNA polymerase I [Leptospira interrogans]
 gi|283969357|gb|ADB54412.1| DNA polymerase I [Leptospira interrogans serovar Australis]
 gi|283969359|gb|ADB54413.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969361|gb|ADB54414.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969365|gb|ADB54416.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969367|gb|ADB54417.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969369|gb|ADB54418.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969371|gb|ADB54419.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969373|gb|ADB54420.1| DNA polymerase I [Leptospira interrogans serovar Bataviae]
 gi|283969397|gb|ADB54432.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969409|gb|ADB54438.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
 gi|283969413|gb|ADB54440.1| DNA polymerase I [Leptospira interrogans serovar Wolffi]
 gi|283969434|gb|ADB54450.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969456|gb|ADB54461.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
          Length = 144

 Score =  137 bits (346), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/145 (39%), Positives = 92/145 (63%), Gaps = 2/145 (1%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     KT
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDNLKLRIVKKT 60

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +TG   +T  ++ +   G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+ 
Sbjct: 61  QTG--FSTDHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLG 730
               TGRL+S +PNLQNIPI+   G
Sbjct: 119 TIAATGRLSSTDPNLQNIPIRDREG 143


>gi|283969442|gb|ADB54454.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
          Length = 144

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/145 (39%), Positives = 92/145 (63%), Gaps = 2/145 (1%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     KT
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDNLKLRIVKKT 60

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +TG   +T  ++ +   G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+ 
Sbjct: 61  QTG--FSTDHEVLEELIGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLG 730
               TGRL+S +PNLQNIPI+   G
Sbjct: 119 TIAATGRLSSTDPNLQNIPIRDREG 143


>gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
          Length = 653

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 91/596 (15%), Positives = 193/596 (32%), Gaps = 133/596 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 53  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NS 107

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 108 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 167

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 168 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 217

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 218 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLKNDQGLDIPNLQKK-------T 269

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 270 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 328

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 329 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 388

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 389 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 448

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 449 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 508

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 509 SRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQVVEFMGLDLNRKWSKL 568

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 569 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 653

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 91/596 (15%), Positives = 193/596 (32%), Gaps = 133/596 (22%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDS 498
            N          K    +    K   N  +++  L ++    +    +   M+     +S
Sbjct: 53  DNEPFHADFETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NS 107

Query: 499 GRSSH--DIASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQ 537
            R      +  + +                ++ S   K   +   R  ++P   +    Q
Sbjct: 108 MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ 167

Query: 538 VQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
             ++ I +  V + +   ++  P   +E+   V+++           +   GI++ + L+
Sbjct: 168 FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLM 217

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
              +    ++   L      ++G + N +SP QL   L            K         
Sbjct: 218 LGANVLDKQSKEELLNQAKHITGLE-NPNSPTQLLAWLNNDQGLDIPNLQKK-------T 269

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
             E +        K +    Q+SK      + + + +    +RV   +      TGR A 
Sbjct: 270 VQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAG 328

Query: 716 LEPNLQN-------------------------------IPIKTDLGQKIRRAFISPPTKK 744
               LQN                               +  +  L Q +R  F +    +
Sbjct: 329 RGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNE 388

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAK 802
           L  +D+S IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K
Sbjct: 389 LAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGK 448

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV----- 853
               ++ Y      L    A ++ I  +E    +  + +  P I  + +  +        
Sbjct: 449 VSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 508

Query: 854 -------------RQNGY--VETIFGRRIHYD-------------------EINSPKSSI 879
                         + G+  +E   GR + Y                    ++N   S +
Sbjct: 509 SRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKL 568

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           +    +   N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 569 KTYGGKLVEN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|56784845|dbj|BAD82085.1| putative DNA polymerase I 3'-5' exo domain [Oryza sativa Japonica
           Group]
 gi|215686953|dbj|BAG89766.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737221|dbj|BAG96150.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 339

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 13/202 (6%)

Query: 61  FAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
              + D      +R  + P YKA+RP+ P         V    +   +P + + G+EADD
Sbjct: 120 VVAVLDGEGGNEYRRRLLPSYKAHRPRGPG--TGADSRVIDVLRECNVPVVRVDGYEADD 177

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIP 175
           ++AT T    ++GF V I S DKD  QL+S    L   +    +     + H + ++   
Sbjct: 178 VVATLTEQVLQKGFRVVIGSPDKDFKQLISEDVQLVMPIPEIGRWSFYTLRHYVAQYKCD 237

Query: 176 PEKMVCLQALTGDSIDNIPG----IPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR 229
           P   + L+   GD  D IPG    +PG G KTA  LL+++G+LEN+L       + +   
Sbjct: 238 PTADLSLRCFIGDEADGIPGIQHLVPGFGRKTAVKLLKKHGSLENLLNTAAVRTVGKDYA 297

Query: 230 RENILEYAETARLSRKLVMLRT 251
           ++ ++++A+  R + +++ L+ 
Sbjct: 298 QDALVKHADYLRKNYEVLSLKR 319


>gi|71754987|ref|XP_828408.1| mitochondrial DNA polymerase I protein D [Trypanosoma brucei TREU927]
 gi|21929665|gb|AAM81965.1|AF445379_1 DNA polymerase I-like protein D [Trypanosoma brucei]
 gi|70833794|gb|EAN79296.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            brucei]
          Length = 1629

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 147/411 (35%), Gaps = 63/411 (15%)

Query: 618  GEKFNLSSPKQL-GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G + N   P QL  + +  K + P+  + + G+   T           +   + ILE R 
Sbjct: 1212 GGRLNQYVPSQLDAEQVMRKFRSPTTRQLQVGEDSLTY----FKKTHGDKTAETILELRA 1267

Query: 677  LSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
            + K+  TY ++      + + ++     +H       T TGRLAS  PN QNIP   +  
Sbjct: 1268 MEKLIGTYYENTDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASANPNCQNIPK--EDK 1325

Query: 731  QKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR-MVAA---- 783
              +R  F+S   +K   I ADYSQ+E+  LA +A    + +   +++D H   VA     
Sbjct: 1326 SPLREMFVSRYGEKGMCIEADYSQLEVVALAVLANDQQMLEDLRSNVDFHCKRVAMMRPD 1385

Query: 784  ----EIFGVNIEKVSPQ---MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
                EI     +   P+   +R+ AK  +F   YG     ++    + + +    I++  
Sbjct: 1386 LQYTEILKKAKKDKEPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQDQVRHLIEKER 1445

Query: 837  HRFPGIHEYIEKTKNFV------RQNGY--VETIFGRRIHYDEINS-------------- 874
              + G+  +               QNG   V      +  +  I                
Sbjct: 1446 ETYRGVDVFNSMVALSANKFDASLQNGSRNVRGHQIFKGMFPVITGSRYIFTESDVPEGL 1505

Query: 875  -PKSSIR----NINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLA--TKMLLQIHD 926
                S+     N +     N P+QG A +I +  +  + +  L          ++  +HD
Sbjct: 1506 LRNKSLAVKSTNFSPTHLKNYPVQGFAGEIVQIMLGVLWRHFLRKDNYGGLAVLINTVHD 1565

Query: 927  ELVFEVPEEEITTASQIIVHSMEKA------CLPKINLRVPLKVNIKVSNN 971
             +  +   + +          M           P++ + V    ++    N
Sbjct: 1566 CVWIDCHMDVLQDVVLETDGIMSSVRDVLNRLYPEMEVSVDFPCDVVAGEN 1616



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 87/219 (39%), Gaps = 31/219 (14%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-------GFEDIMLMSYVL--DSGRS 501
           S      ++   L +GHNIK+D L + R  + +R          D M   Y+L     + 
Sbjct: 594 SLFLPPLDDYDVL-VGHNIKFDLLHMWR-DVELRRFLKRGGKIWDTMYAEYLLTGHEVKL 651

Query: 502 SH--DIASIAQKWLSYTRKEILKSRKSSIPID--KISDSQVQEHA---IENSNVILQLWL 554
            H   +  +A+ +   T K     +  S   D  +I    + ++    +EN+ +I +   
Sbjct: 652 GHGAGLEEVAKSYGGQTPKLDAVKQAWSSGKDTCEIPYRTLTQYLHGDLENTELIFKKH- 710

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            +   L   +++ +  R     +   ++ME  G++ +  L    S E+   +  L  ++ 
Sbjct: 711 -IERALAQRQVVIILAR--MDGLLCTTEMEYNGLKTNVQLALSQSNELMCKVKELRRHLD 767

Query: 615 DLSGEK--------FNLSSPKQLGDILF-TKLKFPSGAK 644
           +   ++        FN +S + L    F  KLK  + A+
Sbjct: 768 NSIPKEISIDCRKYFNWASNQHLIAFFFGGKLKLSTNAR 806


>gi|261334251|emb|CBH17245.1| mitochondrial DNA polymerase I protein D,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1629

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 147/411 (35%), Gaps = 63/411 (15%)

Query: 618  GEKFNLSSPKQL-GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            G + N   P QL  + +  K + P+  + + G+   T           +   + ILE R 
Sbjct: 1212 GGRLNQYVPSQLDAEQVMRKFRSPTTRQLQVGEDSLTY----FKKTHGDKTAETILELRA 1267

Query: 677  LSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
            + K+  TY ++      + + ++     +H       T TGRLAS  PN QNIP   +  
Sbjct: 1268 MEKLIGTYYENTDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASANPNCQNIPK--EDK 1325

Query: 731  QKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR-MVAA---- 783
              +R  F+S   +K   I ADYSQ+E+  LA +A    + +   +++D H   VA     
Sbjct: 1326 SPLREMFVSRYGEKGMCIEADYSQLEVVALAVLANDQQMLEDLRSNVDFHCKRVAMMRPD 1385

Query: 784  ----EIFGVNIEKVSPQ---MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836
                EI     +   P+   +R+ AK  +F   YG     ++    + + +    I++  
Sbjct: 1386 LQYTEILKKAKKDKEPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQDQVRHLIEKER 1445

Query: 837  HRFPGIHEYIEKTKNFV------RQNGY--VETIFGRRIHYDEINS-------------- 874
              + G+  +               QNG   V      +  +  I                
Sbjct: 1446 ETYRGVDVFNSMVALSANKFDASLQNGSRNVRGHQIFKGMFPVITGSRYIFTESDVPEGL 1505

Query: 875  -PKSSIR----NINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLA--TKMLLQIHD 926
                S+     N +     N P+QG A +I +  +  + +  L          ++  +HD
Sbjct: 1506 LRNKSLAVKSTNFSPTHLKNYPVQGFAGEIVQIMLGVLWRHFLRKDNYGGLAVLINTVHD 1565

Query: 927  ELVFEVPEEEITTASQIIVHSMEKA------CLPKINLRVPLKVNIKVSNN 971
             +  +   + +          M           P++ + V    ++    N
Sbjct: 1566 CVWIDCHMDVLQDVVLETDGIMSSVRDVLNRLYPEMEVSVDFPCDVVAGEN 1616



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 87/219 (39%), Gaps = 31/219 (14%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-------GFEDIMLMSYVL--DSGRS 501
           S      ++   L +GHNIK+D L + R  + +R          D M   Y+L     + 
Sbjct: 594 SLFLPPLDDYDVL-VGHNIKFDLLHMWR-DVELRRFLKRGGKIWDTMYAEYLLTGHEVKL 651

Query: 502 SH--DIASIAQKWLSYTRKEILKSRKSSIPID--KISDSQVQEHA---IENSNVILQLWL 554
            H   +  +A+ +   T K     +  S   D  +I    + ++    +EN+ +I +   
Sbjct: 652 GHGAGLEEVAKSYGGQTPKLDAVKQAWSSGKDTCEIPYRTLTQYLHGDLENTELIFKKH- 710

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            +   L   +++ +  R     +   ++ME  G++ +  L    S E+   +  L  ++ 
Sbjct: 711 -IERALAQRQVVIILAR--MDGLLCTTEMEYNGLKTNVQLALSQSNELMCKVKELRRHLD 767

Query: 615 DLSGEK--------FNLSSPKQLGDILF-TKLKFPSGAK 644
           +   ++        FN +S + L    F  KLK  + A+
Sbjct: 768 NSIPKEISIDCRKYFNWASNQHLIAFFFGGKLKLSTNAR 806


>gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 653

 Score =  137 bits (345), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 97/588 (16%), Positives = 200/588 (34%), Gaps = 135/588 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 62  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 116

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 117 DKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 176

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 177 EVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 226

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +              K T QD  +   G 
Sbjct: 227 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLKEATGK 280

Query: 665 NPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN- 722
               K +LE R Q+SK      + + + +    +RV   +      TGR A     LQN 
Sbjct: 281 ---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNL 336

Query: 723 ------------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
                                         +  +  L Q +R  F S    +L  +D+S 
Sbjct: 337 TKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSA 396

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIY 810
           IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y
Sbjct: 397 IEARVIAWYAKERWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGY 456

Query: 811 GISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------- 853
                 L    A ++ I  +E    +  + +  P I  + +  +                
Sbjct: 457 QGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH 516

Query: 854 -----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAA 887
                 + G+  +E   GR + Y                    ++N   S ++    +  
Sbjct: 517 GLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLV 576

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            N  +Q +A D+   ++  +  S        K++  +HDE++ E+P  
Sbjct: 577 EN-IVQATARDLLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|207109828|ref|ZP_03243990.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 152

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 5/157 (3%)

Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           F    DIH   +  +FG ++   + + R  AK+INF ++YG+   +L+  L I  +EA  
Sbjct: 1   FLKGRDIHLETSKALFGGDL---AKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEAKS 57

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           YI+ YF RFP I +Y+ + K  + +     T+ GR   +D   +    I+    R  +NA
Sbjct: 58  YIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGA-NDYIKGNYLREGVNA 116

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
             QGSA+D+ +  M+ V +  + +  + ++LLQ+HDE
Sbjct: 117 IFQGSASDLLKLGMLKVSERFK-NNPSVRLLLQVHDE 152


>gi|146086133|ref|XP_001465462.1| mitochondrial structure specific endonuclease I (SSE-1) [Leishmania
           infantum JPCM5]
 gi|134069560|emb|CAM67883.1| putative mitochondrial structure specific endonuclease I (SSE-1)
           [Leishmania infantum JPCM5]
 gi|322498941|emb|CBZ34014.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 297

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 128/297 (43%), Gaps = 37/297 (12%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFC----NMLWKLLQNSRKESI 57
            +E  + L+DG + ++R ++     + +  G  ++ +  F       +     +     +
Sbjct: 3   AREKAIVLIDGPALVHRWYHRWSY-TAERYGTSID-VKQFAIKNARFMIATAHSFDPAHM 60

Query: 58  ASH----------------FAVIFDYPAVTFRNEIYPDYKANRPK---IPEMLLPQLPLV 98
           A H                  V FD+     R +IY DYKANR +    PE  L +    
Sbjct: 61  AQHLLSPQTEYTHTPKHNRIIVCFDHGDG-GRRQIYADYKANRLEKTVTPEFRLIERVAK 119

Query: 99  RLATQAFGIPAIEIQ---------GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS 149
           ++         + +            EADD+IAT  +  ++      ++S D DL QLV 
Sbjct: 120 KVFADEPRESLLVVPDCDAGLTNLNAEADDMIATLAFFNQQSRRPTVVMSHDYDLYQLVD 179

Query: 150 P--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
               +  YD   +  +    VI++ G+PP+ +   ++L GDS DNIPG+ GIG   A  L
Sbjct: 180 EAKKSYHYDIRTKHLVSERGVIERVGVPPKLVRDFKSLAGDSSDNIPGVNGIGKVRARNL 239

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           L++YGNL+ IL    + +     E + E A+ A +SR+LV  R    +    E  + 
Sbjct: 240 LKKYGNLDGILFKGIKKETGHLGELLNEGAKMALISRQLVDFRMCPKVIKVCESFMR 296


>gi|328553017|gb|AEB23509.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
          Length = 763

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 105/533 (19%), Positives = 184/533 (34%), Gaps = 115/533 (21%)

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           ++    + E+   +    L+L       ++  K   + E+ +  +I  + +ME  G+++D
Sbjct: 249 EVDRDIMMEYVHSDGIYTLELVEFTYSTVLKRKQKAILEQ-ENKLIIELLKMERVGMKVD 307

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
              L     +    +  L E ++ + GE F +S    + D    KL        K+   K
Sbjct: 308 MPYLHSCFKKCEDEIQKLYEELWGIVGEYFTVSQGTVIADYFEKKLGERPETTDKSFLKK 367

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
                       D+ + + I   R+L K +STY   +   + +     +T Y   +T++G
Sbjct: 368 H----------KDDRVSQLITRLRRLEKWQSTYISRIIE-VAQYDNHFYTQYGQFNTVSG 416

Query: 712 RLASLEPNLQNIPIKTDLGQKI------------------RRAFISPPTK--KLISADYS 751
           RL S         I T+ G+                    RRAFI       K+   D S
Sbjct: 417 RLGSDAQQFPKERILTEEGELYEKENGEGKAPIEYEIFSPRRAFIVEGGNYNKIAYFDLS 476

Query: 752 QIELRILAHIA-----KITPLYQVF----------------------------------- 771
           QIELR  A+           L + +                                   
Sbjct: 477 QIELRAQANYTVLLKKPDLNLCRAYMPFKCTHYITGEEFRYDTKEERARWYEKKEDGTSV 536

Query: 772 ---ENSL-----DIHRMVA-----AEIFGV-------NIEKVSPQMRRHAK--------T 803
              EN       D+H   +     A  F           EK SP   +  K         
Sbjct: 537 WLLENGESWTPTDVHSETSHNTLMALAFKCVDKYKQYEHEKESPVDEKSFKKFWRYIGKM 596

Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
            NF   YG    + +  L +    A   +  + + FP +  Y ++    V++N Y   ++
Sbjct: 597 FNFMRNYGGGAKKASEALEVSMEIANALVSGWSNTFPEVSYYQKQVAAKVQKNSYATNMY 656

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           GR       +               N  +QGS AD+ +  +I + + L ++   T  L  
Sbjct: 657 GRVYFLSNTD---------KAYKVGNYLVQGSCADMLKGYVIRIGEFLRENNCKTLPLAN 707

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN-NWQEE 975
           IHDEL F V + E       I   ME        ++VP+ V+++++   W ++
Sbjct: 708 IHDELQFLVHKGE-EWIFPHIKRIMEDVEW----MQVPVVVDLEITETTWADK 755


>gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
 gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
          Length = 643

 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 83/604 (13%), Positives = 191/604 (31%), Gaps = 117/604 (19%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GI-----SMRGFED 488
           D    +   +E   +LK    N        N  ++++ L  Y    G        + ++D
Sbjct: 41  DVVLVDLTKEEFPEFLKNHILNADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKD 100

Query: 489 IML--------------MSYV-LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           IM+               SY+ L+  + +   A I  ++ S   K    +   +  + + 
Sbjct: 101 IMVHAQELGLPASLERCASYLGLEEQKDTRGKALI--RYFSIPCKPTKANGGRTRNLPEH 158

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV-YERLDKPMIDVVSQMEITGIQIDQ 592
              + +E+   N   ++    +       EKL  V     +        ++   G+ +D+
Sbjct: 159 DPEKWEEYGEYNVQDVVTQMAI------AEKLESVPVHDREWDHYACDQRINDRGVALDK 212

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
           +L+          + SL   +  ++G   N +S  QL   L     + +   TK      
Sbjct: 213 ELVASALYCKDVKMESLSGELKAITGLA-NPNSRAQLLPWLKEH-GYSANGLTK------ 264

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A   +++   +  + + +    Q +       +++   +    +         ++ TGR
Sbjct: 265 -ADVEQELKTAEGELKRVLELKLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGR 323

Query: 713 LASLEPNLQNIPIK----------------------------TDLGQKIRRAFISPPTKK 744
            A     +QN+                                 L Q +R A ++     
Sbjct: 324 WAGRVVQVQNLARNYIKDLDDARGYVKKRDIDAVEILYDSLNDTLKQLVRTALVAKDGCT 383

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
              +D+S IE R++A  A       VF     I+   A+++FG+ IE++  ++R+  K  
Sbjct: 384 FYVSDFSAIEARVIAWFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKIS 443

Query: 805 NFSIIYGISPFRLAT----QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------- 853
             ++ Y   P  L       + +   E    +  +      I ++ +  +          
Sbjct: 444 ELALGYQGGPGALKQMGALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRAAIKAIKSR 503

Query: 854 -----------RQNGYVETIFGRRIHYDEINSPK-------------------SSIRNIN 883
                       + G++        +     +                      + +   
Sbjct: 504 APIKLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYEGQGDKAYFTAQETY 563

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
               +   +Q +A DI   A++ +  +         ++  +HDE + E     I   + +
Sbjct: 564 GGKLVENIVQATARDILAEALLRIEAA------GHGVVFHVHDEAIIEGSGLTIEEVNDL 617

Query: 944 IVHS 947
           +  +
Sbjct: 618 MAQA 621


>gi|58257974|gb|AAW69382.1| DNA polymerase I [Hydrogenothermus marinus]
          Length = 172

 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 22/188 (11%)

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP        +R+ F       +I ADYSQIELRI A   K   +   F+  LD
Sbjct: 1   DPNLQNIP------TSLRKLFRPAKNYSMIVADYSQIELRIAAEYTKDQVMINAFKQGLD 54

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAAD 830
           +HR  A+ I G + E ++ + R+ AK INF +IYGISP  L      +  + I   EA  
Sbjct: 55  LHRFTASLITGKDYEDITKEERQMAKAINFGLIYGISPRSLMEYASSSYGVEISLKEAQI 114

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890
           + +++F  + G  ++ E+TK  ++ +  +E +         +    +          +N 
Sbjct: 115 FHEKFFEHYKGFKKWHEETKEKLKNHREIEVVSLLGRRMKVMKFTDA----------VNY 164

Query: 891 PIQGSAAD 898
           PIQG+ AD
Sbjct: 165 PIQGTGAD 172


>gi|283969411|gb|ADB54439.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
          Length = 144

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/145 (38%), Positives = 91/145 (62%), Gaps = 2/145 (1%)

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
           TGI +D    ++++ +  + +  LE  I+  +G  FN++S K+L  ILF  LK     K 
Sbjct: 1   TGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDNLKLRIVKKN 60

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
           +TG   +T  ++ +   G++PII+ +L++R+ +K+KSTY D+LP  +N +T R+HT Y+ 
Sbjct: 61  QTG--FSTDHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQ 118

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLG 730
               TGRL+S +PNLQNIPI+   G
Sbjct: 119 TIAATGRLSSTDPNLQNIPIRDREG 143


>gi|157869156|ref|XP_001683130.1| mitochondrial structure specific endonuclease I (SSE-1) [Leishmania
           major strain Friedlin]
 gi|68224013|emb|CAJ05050.1| putative mitochondrial structure specific endonuclease I (SSE-1)
           [Leishmania major strain Friedlin]
          Length = 297

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 37/297 (12%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFC----NMLWKLLQNSRKESI 57
            +E  + L+DG + ++R ++     + +  G  ++ +  F       +     +     +
Sbjct: 3   AREKAIVLIDGPALVHRWYHRWSY-TTERYGTSLD-VKQFAIKNARFMIATAHSFDPAHM 60

Query: 58  ASH----------------FAVIFDYPAVTFRNEIYPDYKANR--PKIPEMLLPQLPLVR 99
           A H                  V FD+     R +IY DYKANR    +         + +
Sbjct: 61  AQHLLSPQTEYAHTPKHNRIIVCFDHGDG-GRRQIYADYKANRLQKAVTSEFRLIERVAK 119

Query: 100 LATQ------AFGIPAIEIQ----GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS 149
                        +P  +        EADD+IAT  +  ++      ++S D DL QLV 
Sbjct: 120 KVFADEPRESLLVVPDCDAGLANLNAEADDMIATLAFFNQQNTRPTVVMSHDYDLYQLVD 179

Query: 150 P--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
               +  YD   +  +    V+++ G+PP+ +   ++L GDS DNIPG+ GIG   A  L
Sbjct: 180 EAKKSYHYDIRTKHLVSERGVMERVGVPPKLVRDFKSLAGDSSDNIPGVNGIGKVRARNL 239

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
           L++YG+L+ IL    + +     E + E A+ A +SR+LV  R    +    E  + 
Sbjct: 240 LKKYGDLDGILFKGIKKETGHLGELLNEGAKMALISRQLVDFRMCPKVIKVCESFMR 296


>gi|257068677|ref|YP_003154932.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brachybacterium faecium DSM 4810]
 gi|256559495|gb|ACU85342.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brachybacterium faecium DSM 4810]
          Length = 590

 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 84/545 (15%), Positives = 173/545 (31%), Gaps = 100/545 (18%)

Query: 443 NTLTKEILSYLKKFFENEHFL-KIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS 501
                E L+ L    E E     +  +       L   G++++   D+ L+  +L     
Sbjct: 45  EYAAPEGLAALVGRVERESSPRWVLSDAAAWCPRLLSAGVTLQRCHDLRLVHRILRHSEL 104

Query: 502 SHDIASI--AQKWLSY--TRKEILKSRKSSIPIDKIS------DSQVQEHAIENSNVILQ 551
             D A +  A  W +     + +  +  +   +D          S ++E   E +     
Sbjct: 105 VRDPAPLRAATAWDTPLDPHEPVRDTGATLFDLDAAPSRSGAVPSDLEETLAEFARQRTA 164

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ-VSAEIS------- 603
           +     P       L +    +     + ++++  GI  D     + +SA +        
Sbjct: 165 IDGAQDPAR-----LRLLVAAESAGALIAAELQAAGIPWDVAEHDRILSAALGPRPSPGT 219

Query: 604 --KNLLSLEENIYDLSGEKF-NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
             + ++     + +  G+    L S  +L   L                    +    ++
Sbjct: 220 PPRRMVETGAEVREALGDPLVPLDSAPKLLRAL------------HRAGIDVASTSQWEL 267

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               +P I  +L+++++S++ +    +  +       R    Y     +TGR AS     
Sbjct: 268 KEHQHPAIAPLLQYKKMSRLLTANGWTWLDEWVHEG-RYRPLYVPGGVVTGRWASSGGGA 326

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780
             IP       ++R A  + P   L+SAD SQ+E R+LA ++    +        D++  
Sbjct: 327 LQIPR------QLRPALRADPGWLLVSADVSQLEPRVLAAMSGDRAMIAAGA-GRDLYS- 378

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840
                 G+    V    R+ AK      +YG               ++   + R    FP
Sbjct: 379 ------GIVEAGVVS-TRQEAKIGVLGALYGG-----------TTGDSGRVVPRLRQTFP 420

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYD---EINSPKSSIR---------------NI 882
                ++       ++G V T  GR         I + +++ +                 
Sbjct: 421 DAMRLVDDAAATGERSGTVTTWLGRSSPAPDEEWIRAQRAAHQVDAPAGARERARRAARD 480

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKL----------------ATKMLLQIHD 926
             R   N  +QG+AA+     M ++   L                        +   +HD
Sbjct: 481 RGRFTRNFVVQGTAAEWALSWMAALRLRLAGFPAVPEPEAAAPSGPVFSRRAHLAFFLHD 540

Query: 927 ELVFE 931
           E++  
Sbjct: 541 EVIVH 545


>gi|189427035|ref|YP_001950134.1| DNA polymerase I [Ralstonia phage RSL1]
 gi|189233347|dbj|BAG41704.1| DNA polymerase I [Ralstonia phage RSL1]
          Length = 1050

 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 124/764 (16%), Positives = 234/764 (30%), Gaps = 169/764 (22%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I       + +++ +T    +    T  + + H++   +  +T    +  +  V  I   
Sbjct: 225 IKTIDQFDKLMKRFDTAEYCALDTETKNLSSLHNRIYTMQFTT--NHNPNAGYVLAIDHP 282

Query: 431 LSVHTSQDSTG-KNTLTKEILSYLKKFFENEHFLKIGH--NIKYDKLVLHRYGISMRGFE 487
           L+  + ++    K  L +   +              GH  +++  + +L R  I      
Sbjct: 283 LTHWSKEERQYIKRELRQRFAAKTGPLL----ITFNGHMFDLRVIRQIL-RIPIMWLPVW 337

Query: 488 DIMLMSYVLDSGRS-----------------SHDIASIAQKW--LSYTRKEILKSRKSSI 528
           +IM   + LD   S                    +A I   +    Y      K+++S+ 
Sbjct: 338 EIMFAEHSLDENASLLNAASNAVNPDGKKATYGGLAPIFTSYGNDHYYTAAFSKAQRSTS 397

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPK---LIVEKL------LHVYERLDKPMIDV 579
              K  +    E+A  ++  I  +  +   +   + ++        +   E+        
Sbjct: 398 GQVKPDNPDFLEYASTDTVSIAHIRQMQIKRASYMEIDGQSFAPYFVRHMEQQMSDTAHA 457

Query: 580 VSQMEITGIQIDQDLLKQV-------SAEISKNLLSLE-----------------ENIYD 615
           +S M   G  + +  LK +          ++K L  L                       
Sbjct: 458 LSHMRNDGSSLSRPALKHLMGPKSPLREMMAKTLDQLRLMNEVRKANKELLSDSGFKAKS 517

Query: 616 LSGEK-----FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           L G       F  + P     + F  L     + +K        ++  +     N ++  
Sbjct: 518 LFGGVSDKWIFQPTKPDHKAKLFFDVLGLEPLSMSKITGKPQIDKEFIKHYKDKNKVVAL 577

Query: 671 ILEWRQLSKIKSTYADSLPNHIN---KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
             E++ L+K+ STY  +    +N     +             TGRL S +PNLQ IP + 
Sbjct: 578 YGEYQALTKVISTYVKAWSRRLNTALDESTDDSLRADYFLVDTGRLGSKDPNLQQIPSRG 637

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS------------- 774
            L + ++  F++ P   L+  DYS  E+RI +  +    +   F                
Sbjct: 638 PLSKLLKTLFVARPGYLLVRFDYSAHEVRIWSVASGDKVIAAAFRTGLELRQAFIQDPSD 697

Query: 775 ---------LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP- 824
                     D H +     F   ++K  P +R   K + F +IYG     L    +   
Sbjct: 698 ANKKALKEKGDFHILNVQRFFKKLVDKDHP-LRDAVKKVVFGVIYGKGAETLGEDTKEGD 756

Query: 825 ----------------------------------------------RSEAADYIKRYFHR 838
                                                            A   + + F  
Sbjct: 757 ISSLRAEVAKLYDESLTCKDAKRLARINEMLEELDDKLTALFNEDRSEYAQGIVDKMFGE 816

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           F   H +I++      +  YV +  GR  H     +    I +   R   NAPIQG A++
Sbjct: 817 FKAGHRWIQRMSKMAEEKFYVYSFNGRVRHLYAAMTGDKRIISKQVRRGTNAPIQGVASE 876

Query: 899 ITRRAMISVHKSLEDHKLATKMLL---------------QIHDELVFEVPEEEITTASQI 943
           I  +A   +           K +L                +HD L   VP + +     I
Sbjct: 877 IGNKADRLIITEYYKRLPKLKKMLGIDRSDWELRVFSQRAVHDALYKMVPYDMVIPFIHI 936

Query: 944 --------IVHSMEKACLPKINLRVPLKVNIKVSN------NWQ 973
                   +  + EKA   K  +   ++  I VS+      +W 
Sbjct: 937 LQYQATYGVQAAYEKAFNFKWTIAPEIECEIGVSDDKSRKWSWD 980


>gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
 gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
          Length = 653

 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 96/588 (16%), Positives = 200/588 (34%), Gaps = 135/588 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 62  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 116

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 117 DKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 176

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 177 EVEMTIAHKIKDFPVTAIEQAYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 226

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           +   L +    ++G + N +SP QL   L  +              K T QD  +   G 
Sbjct: 227 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIP-----NLQKKTVQDYLKEATGK 280

Query: 665 NPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN- 722
               K +LE R Q+SK      + + + +    +RV   +      TGR A     LQN 
Sbjct: 281 ---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQLQNL 336

Query: 723 ------------------------------IPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
                                         +  +  L Q +R  F S    +L  +D+S 
Sbjct: 337 TKHYISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSA 396

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIY 810
           IE R++A  AK      VF     I+   A+++F V +E ++    +R+  K    ++ Y
Sbjct: 397 IEARVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGY 456

Query: 811 GISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------------- 853
                 L    A ++ I  +E    +  + +  P I  + +  +                
Sbjct: 457 QGGAGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH 516

Query: 854 -----RQNGY--VETIFGRRIHYD-------------------EINSPKSSIRNINERAA 887
                 + G+  +E   GR + Y                    ++N   S ++    +  
Sbjct: 517 GLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLV 576

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            N  +Q +A ++   ++  +  S        K++  +HDE++ E+P  
Sbjct: 577 EN-IVQATARELLAISIARLEAS------GFKIVGHVHDEVIVEIPRG 617


>gi|291335495|gb|ADD95107.1| 5B protein [uncultured phage MedDCM-OCT-S04-C348]
          Length = 429

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 124/335 (37%), Gaps = 41/335 (12%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E FN  S +Q+ D L  K  +   +KT  G        LE++     P  K + E+  L 
Sbjct: 49  EVFNPGSRQQIVDRLKKKYGWVPESKTDKGNPVLNDDVLEKLP---YPEAKPLAEYMLLK 105

Query: 679 KIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-TDLGQKIR 734
           K      D        ++     +H        +TGR +   PN   IP   +  G++ R
Sbjct: 106 KRLGQIKDGNNAWIKLVSPDGY-IHGDMVTNGCITGRCSHRNPNTAQIPAGYSPYGKECR 164

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA---EIFGVNIE 791
             F +P    LI +D   +ELR LA           F +  +  +MV     +I   N E
Sbjct: 165 SLFHAPDDWILIGSDAKALELRCLAGYL-------AFWDGGEYGQMVTDDSVDIHTYNQE 217

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE-------AADYIKRYFHRFPGIHE 844
           K   + R  +K + ++++YG   ++  T +     +           I  +    P + E
Sbjct: 218 KFGVETRDISKRLLYAVLYGAGFYKAGTIVDPDEKDPDILKQLGKTAINSFMTGVPALQE 277

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
              K    +   GY+  +  R ++              ++  A+N  +Q   A + ++ +
Sbjct: 278 LKNKLAENLVARGYLLGLDRRPLYCR------------SDFKALNVLLQSCGAILMKQVV 325

Query: 905 ISVHKSLEDHKLATKMLLQ----IHDELVFEVPEE 935
           I++HK+L    L           IHDE+       
Sbjct: 326 INIHKNLVSAGLVYGQDWHQHGMIHDEIQLSCRPG 360


>gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 352

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 120/352 (34%), Gaps = 78/352 (22%)

Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
               + +      + + +   ++LS+        + +      +         +  TGR 
Sbjct: 4   ESVDDALVSASGEVKEALELRQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTGRW 63

Query: 714 ASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKKL 745
           A     +QN+P                            +   L Q IR AFI     + 
Sbjct: 64  AGRLVQVQNLPRNYLPDLAQARSLVRDGNGETLEMLYSSVPDTLSQLIRTAFIPSKGHRF 123

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKT 803
           I ADYS IE R+LA +A        F+N  D++   A+ +FGV +EK  V+ ++R+  K 
Sbjct: 124 IVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKI 183

Query: 804 INFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------ 853
              +  Y  S   L    A ++ +   E    +  +    P I +      N        
Sbjct: 184 AVLACGYNGSVGALKAMGALKMGLSEDELQPIVDAWRAANPNIVQLWHDVDNAATRAIST 243

Query: 854 ------------RQNG--YVETIFGRRI------------------HYDEINSPKSSIRN 881
                       +++G  ++    GRR+                  ++ +  + K     
Sbjct: 244 GRPVTLGNLGFEKKSGMLFINLPSGRRLAYVKPGIGMNRFGGTSITYWGQGVARKWQKLE 303

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
                 +   +Q +A D+   A+  +  +        ++++ IHDE+V + P
Sbjct: 304 TYGGKLVENIVQATARDLLVEAITRIENA------GHRIVMHIHDEVVIDEP 349


>gi|289976608|gb|ADD21653.1| DNA polymerase [Caulobacter phage Cd1]
          Length = 797

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 133/390 (34%), Gaps = 64/390 (16%)

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA----------DSLPNHINKRTQ 697
           G +  +A  ++ +     P ++++ +   L+K   TY             +   +     
Sbjct: 373 GVYSVSADVIKGLANRGIPFLESLAKVEGLAKDLGTYYVVTDPDTGQQKGMLTLVQADGI 432

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            +H   +  ST+T R +S  PNLQN+P       K        P  K+I +D++ +E+ I
Sbjct: 433 -IHHMLNHTSTVTARFSSSNPNLQNLPKDGKSLVKSVFISRFGPEGKVIQSDFTALEVYI 491

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ-----------MRRHAKTINF 806
            A +     L    ++ LD+H +  ++  G+  E+                R  AK  +F
Sbjct: 492 QAILTDCRQLILDLKDGLDMHCVRVSQAEGIPYEEAYRLCVVEKVKEWSTKRTKAKIFSF 551

Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET----- 861
              YG     +A    + R E    I+    R+P I ++ E+    +  N  V T     
Sbjct: 552 QRAYGAGAALIAESTGMAREEVDALIEAENTRYPEIEKFYERLTKKIMANS-VPTNKFAQ 610

Query: 862 -----------------------IFGRRIHYDEINSPKSSIRN-----INERAAINAPIQ 893
                                     R     E  +   + R       +     N  +Q
Sbjct: 611 HPDLPHLTCNFRKSTYQTPDGKLYSYRESPAPEFLAKAPASRGGCTTSFSPTEIKNYVVQ 670

Query: 894 GSAADITR-RAMISVHKSLEDHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
           G   +  +    +++           +  ++ Q+HD L  +  +E     + ++   ME 
Sbjct: 671 GGGGEWAKAAMWLAIRAFYARGNFGGRGLLVNQVHDALYADAAKEVALEVAALLHACMEA 730

Query: 951 A-----CLPKINLRVPLKVNIKVSNNWQEE 975
           A           ++VP+  +     +  EE
Sbjct: 731 ASEFMEYYFDWEVKVPVPSDTTWGASMIEE 760



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 106/307 (34%), Gaps = 38/307 (12%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +    + + T    +F  K         +  D  +F V   F         +  GKN   
Sbjct: 1   MSYVIWDLETTIRTSFKRK--------ANPFDRDNFVVMQGFKRFGEKIVGEYFGKNPPP 52

Query: 447 KEILSYLKKFFENEHFLK--IGHNIKYDKL-VLH---RYGISMRGFE------DIMLMSY 494
            +    L +        K  +G NIK+D L  L     +   MR         D  L  Y
Sbjct: 53  SDWFIKLVEPPAPLARPKMLVGLNIKFDLLYALRDPDNHAAWMRYVAAGGTVWDCQLAEY 112

Query: 495 VLD---SGRSSHDIASIAQKWLS-YTRKEILKSRKSSIPIDKISDSQVQEHAI----ENS 546
           +L+          +  IA ++       E+    ++ +  + I  + ++ +      E+ 
Sbjct: 113 LLEGMAPTEHMLSMDEIAPRYGGNIKFDEVKALWEAGVSTEDIDPALLRRYLCGTETEHG 172

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERL--DKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           + I    ++ R +L   K     + +  +   +   ++ME+ G+ +D +L +Q + +++ 
Sbjct: 173 D-IGNTEVIFRGQLARAKASGQVKSIMLNMGSLLCTTEMELNGMAVDVELGRQQAEQLAI 231

Query: 605 NLLSLEENIYDLSGEK----FNLSSPKQLGDILFT---KLKFPSGAKTKTGQWKTTAQDL 657
           +L +L   +           F  SS  Q   ++F    K K         G+   T + +
Sbjct: 232 DLAALTVELNAFLPSNLPFDFKWSSRVQKSALIFGGDVKYKARVPIVDDEGKQVYTQKKV 291

Query: 658 EQINCGD 664
                 D
Sbjct: 292 AAYYMSD 298


>gi|71412751|ref|XP_808546.1| mitochondrial structure specific endonuclease I (SSE-1)
           [Trypanosoma cruzi strain CL Brener]
 gi|70872773|gb|EAN86695.1| mitochondrial structure specific endonuclease I (SSE-1), putative
           [Trypanosoma cruzi]
          Length = 267

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 19/227 (8%)

Query: 56  SIASH--FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG------- 106
               H    + FD      R E+YP YK NR +  E       + ++A + F        
Sbjct: 43  HTPKHNKVIICFD-QGDGGRRELYPAYKENRAER-EHAAELSVIKKVAIKVFTGEPKNTL 100

Query: 107 --IPAIEIQ----GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTV 158
             +P ++ +      EADDIIAT     ++      ++S D DL QL+        YD  
Sbjct: 101 IVLPDLDAKLKDVDAEADDIIATLALHNQQLKIPTVVMSHDYDLYQLIDEANKCYHYDIR 160

Query: 159 KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
            +  +  + VI++ G+ P+ +   ++L GDS DNIPG+ GIG   A  LL++YG+LE +L
Sbjct: 161 TKHLVSEKGVIERVGVHPKLVRDYKSLAGDSSDNIPGVKGIGKTRALQLLKKYGDLEGVL 220

Query: 219 INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
               + +     + +   A  A LSRKLV LR+   +    E  +  
Sbjct: 221 TKGKKKQGGHLGDLLRAGAADAELSRKLVELRSCPKVLKACEAFMKH 267


>gi|289804725|ref|ZP_06535354.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 163

 Score =  134 bits (336), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 20/173 (11%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
           AT      + G   TI+STDK   QL+SP   + D  ++  +D   + K++G+
Sbjct: 108 ATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGV 160


>gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
 gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
          Length = 601

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/485 (16%), Positives = 164/485 (33%), Gaps = 92/485 (18%)

Query: 543 IENSNVILQLWLLLRPKLIVEKL----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           I++++++ + +   R  ++VE+     L      ++ + ++   + I G+ ID   ++  
Sbjct: 108 IQDADLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVENA 167

Query: 599 SAEISKNLLSLEENIYDLSGEKF-NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
              I +    L + +  L+     N+S  +++ + +  +L +      K   +  T  + 
Sbjct: 168 LLIIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDK--AYLETVLED 225

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E +     PI + ++E RQ     ST   +    I     R H         TGR +   
Sbjct: 226 ETLP----PIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGATTGRWSGKH 281

Query: 718 PNLQNIPIKT----------------------------DLGQKIRRAFISPPTKKLISAD 749
              QN+P  +                             L   +R    +P  K+LI  D
Sbjct: 282 FQPQNLPRPSFKDTDNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVD 341

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
           YSQIE R+L  +A            ++I+++ A++I+GV  EKV+ + R   K    ++ 
Sbjct: 342 YSQIEARVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALG 401

Query: 810 YGISPFRLA-----TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR---------- 854
           Y               + I    A +    +      I ++    +              
Sbjct: 402 YQGGAKAFQGMAEVYGVEIDTDLADEIKVDWRVANRKIVKFWWGVEKAALNAVTHPGKTF 461

Query: 855 -----QNGYVETIFGRRI-------HYDEINSPKSSIRNINERAAIN------------- 889
                +  + +     R+       +Y    S     +        N             
Sbjct: 462 EIRAIKFRFTDNYLFCRLPSGRLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYG 521

Query: 890 -----APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE--EITTASQ 942
                   Q  A D+   AM+ V  +        +++L +HDEL+ E  ++   +    Q
Sbjct: 522 GKLVENITQAVARDLMAEAMLRVENA------GYEVVLSVHDELIAEANDDFGSVEEFEQ 575

Query: 943 IIVHS 947
           ++   
Sbjct: 576 LMCEL 580


>gi|300788813|ref|YP_003769104.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299798327|gb|ADJ48702.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 562

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 127/380 (33%), Gaps = 54/380 (14%)

Query: 604 KNLLSLEENIYD-LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           K L+ L   I +   G   N  SP  +   L            + G     A+    +  
Sbjct: 202 KALVELAAKISEAFGGRPVNPDSPPSVVRAL-----------ARAGIEVPAARKYL-LKG 249

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
            D+P +  +LE+++LS++ +    +  +       R    Y +   ++GR AS       
Sbjct: 250 IDHPAVGPLLEYKELSRLFTANGWAWLDEWVADG-RFRPHYVVGGVVSGRWASRGGGALQ 308

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           IP        +R    +    KL+ AD +Q+E R+L  ++    L  V   + D++  + 
Sbjct: 309 IPK------VLRTCVRADSGWKLVVADAAQLEPRVLTALSGDRRLADVAAAT-DLYARLG 361

Query: 783 AEIF----GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
             +F     V         R  AK    S +YG +       L +              R
Sbjct: 362 EALFSGARWVPAADDDRDDRARAKIAMLSAMYGGTSGEAGPLLGL-----------LRQR 410

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI-------------NSPKSSIRN--IN 883
           FP    Y+E       +   V +  GR                     +   + R     
Sbjct: 411 FPDAVSYVEHAAQAGERGERVRSRLGRTSPAPSAAWRALTGGLASDEAAELKARRASRGW 470

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
            R   N  +Q SAAD+T   + ++   L        ++   HDE++   P       S  
Sbjct: 471 GRFTRNFVVQASAADMTAVMLATLRTRLPA---PAHLVFFQHDEVIVHTPAALAPEVSSA 527

Query: 944 IVHSMEKACLPKINLRVPLK 963
           I  S+ +A         P++
Sbjct: 528 ITDSVTEAARMLFGPACPVR 547


>gi|326536930|ref|YP_004306337.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A]
 gi|318054506|gb|ADV35682.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A]
          Length = 712

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 111/681 (16%), Positives = 205/681 (30%), Gaps = 155/681 (22%)

Query: 446 TKEILSYLKKF---FENEHFLKIGHN-IKYDKLVL---------HRYGISMRGFEDIMLM 492
             ++L+Y+K           L + HN IKYD   L          R  I  +   D +++
Sbjct: 37  PDDVLAYIKALEAEAAKPDGLIVFHNGIKYDIPALDRMKRELTGKRLNIPRKKVLDTLVI 96

Query: 493 SYVLDSG------------------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           S ++ +                     SH + +   + L   + E     K++   D   
Sbjct: 97  SRLIHANLKETDAGLLRRGIIPGKRYGSHALEAWGYR-LGEMKGEYKDDFKAACREDGTE 155

Query: 535 ----------DSQVQEHAIENSNVI--LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
                     +  +  + +++  V   L   L+  P    +        L+      ++Q
Sbjct: 156 YVDGMEWEHFNEPMMAYCVQDVRVTTKLTRHLMQDPYYFRDGQGIRALVLEHDAAWTLAQ 215

Query: 583 MEITGIQIDQD-------LLKQVSAEISKNLLSLEENIYDLSGEK--------------- 620
           ME  G    +D        L    +++   L+    + Y+  G                 
Sbjct: 216 MERNGFPFHKDGAERLYMELAAERSDLLVRLVQTFGSWYEPKGGTEPFLHPKTGKVLDKY 275

Query: 621 --------------------------------------FNLSSPKQLGDILFTKLKFPSG 642
                                                 F  +S   +  +L      P+ 
Sbjct: 276 PMVKTAKAGSPDYNADGKTRSKTLYVAGCMYTPITHVTFQPTSRPNIIKVLKDAGWEPT- 334

Query: 643 AKTKTGQWKTTAQDLEQINCGDN---PIIKNILEWRQLSKIKSTYADS---LPNHINKRT 696
             T  G      + LE +   D      IK I  +  + K     A+       +     
Sbjct: 335 EFTDKGAPIVDDETLEGVEVADENKMECIKLIQRYLMIQKRIGQLAEGDKAWLRYCETED 394

Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP-----PTK---KLIS 747
             +H   +    +TGR     PN+  +P  K   G + R  F +      P         
Sbjct: 395 GFIHGSINPNGAVTGRATHSYPNMGQVPSAKAPFGPECRSLFGAIYARHIPGWENVVQAG 454

Query: 748 ADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGVNIEKVSPQM-------R 798
            D S +ELR L H           +   + D+H   A    G+  + V  +        R
Sbjct: 455 VDASGLELRCLGHFGAKYDGGGYVDQVLNGDVHWANAVAA-GIAKDAVRDKENHQHDRWR 513

Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY---IEKTKNFVRQ 855
            +AKT  ++ +YG    ++ + +    +      K +    P I      +E +    + 
Sbjct: 514 DNAKTFIYAFLYGAGDAKIGSIVGGGAAAGKALKKAFLENTPVIKSLREGLEGSLIESQV 573

Query: 856 NGYVETIF---GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL- 911
              V   F    +R     ++  K  +R+    +A+NA +Q + A I +  ++ V + L 
Sbjct: 574 YNRVTKKFDIKWKRRFIKGLDDRKIHVRSA--HSALNALLQSAGAVICKAWVVEVERILM 631

Query: 912 EDHKLATKM----------------LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           EDH L                    +  +HDEL       EI      +     +     
Sbjct: 632 EDHGLKHGWTIQNDDGTETPGDFAFMAWVHDELQIAARTPEIGELIIKVSQEAIRNIGES 691

Query: 956 INLRVPLKVNIKVSNNWQEEN 976
            + R  L    K+   W+E +
Sbjct: 692 FDFRCQLDTEGKLGPTWKECH 712


>gi|88856925|ref|ZP_01131576.1| DNA polymerase A [marine actinobacterium PHSC20C1]
 gi|88813801|gb|EAR23672.1| DNA polymerase A [marine actinobacterium PHSC20C1]
          Length = 517

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 25/266 (9%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
               V     L    TGR +   P L      T L +K R   I       IS D+ + E
Sbjct: 264 DDGHVFPMVHLRGAKTGRGSVTGPAL------TSLSKKYRSLIIPEDGAVFISLDFDRAE 317

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
             + A +++   L +   ++ D++R +A ++FG    +     R   KTI   I+YG   
Sbjct: 318 PTVAAALSQDEGLQEAL-STTDVYRELAVKVFGEQAREDDIA-RATCKTIFLGILYGRGA 375

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
             L+ QL I ++EA + I+  +  FP ++ Y E  K        + T +GR +       
Sbjct: 376 QGLSQQLGISKAEATETIRSVWDSFPALNAYCEGLKADAIAGKELRTPWGRLLPVP---- 431

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                 N       N  IQ SAAD+    + +V + L       ++ L IHDE++ +  +
Sbjct: 432 ------NRGPYQTPNLMIQASAADVFYVGLKNVVELLGAD----RLTLPIHDEILLQSSQ 481

Query: 935 EEITTASQIIVHSMEKACLPKINLRV 960
            ++  +S ++  +M    +P +N+ V
Sbjct: 482 GDVFRSSALLEEAM---TVPFLNMTV 504


>gi|70919502|ref|XP_733432.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56505224|emb|CAH83005.1| hypothetical protein PC300270.00.0 [Plasmodium chabaudi chabaudi]
          Length = 199

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 22/207 (10%)

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPP------------TKKLISADYSQIELRILAHIAKI 764
           +PNLQNI  K      ++   I P              + L++ DY Q+EL ++A+++  
Sbjct: 2   QPNLQNIHSKFRCTISLKNDDIKPISVKTKHVKNKSVNQNLLTFDYKQMELFVMAYLSFD 61

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824
           + L ++  NS D+    A  +F  N   V+ ++RR  KT+ + I+YG S   LA  L + 
Sbjct: 62  SQLLKMLNNS-DVFVETAKVLFNTN--DVTKELRRMTKTVIYGILYGQSENGLAKNLLVS 118

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            + A   I  +F+ +P + ++++K K  V+    V T+ GR+   D              
Sbjct: 119 ENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIGRKRLVDP-TIKNK------Y 171

Query: 885 RAAINAPIQGSAADITRRAMISVHKSL 911
           R ++N PIQG AADI + A++S HK L
Sbjct: 172 RISMNTPIQGCAADIMKFALLSCHKIL 198


>gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 644

 Score =  133 bits (335), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 91/592 (15%), Positives = 187/592 (31%), Gaps = 114/592 (19%)

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFED 488
           SV             + I   +++   ++  +K   N ++++  L RY    I    +  
Sbjct: 38  SVDAGPVHVVDLAQGETIPDVVRQALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRC 97

Query: 489 IMLMSYVL---------------DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            M+ S  L               D  +       I          ++   R+ + P    
Sbjct: 98  SMVWSAYLGLPLSLEGAAIVTGADKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDP 157

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM-EITGIQIDQ 592
                       +        +   + I +K+        +    V+ Q+    GI +D 
Sbjct: 158 EK--------WVAFKRYNQRDVETEQAIQDKISRYPVPEQEWGHYVLDQIINDRGILLDP 209

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652
             ++   A  +    +L   +  L+  + N +S  Q+ D L  +         +TG    
Sbjct: 210 VFVEAAIACDTATREALMNRLRTLTKLE-NPNSVMQMKDWLAEQG-------VETGALDK 261

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A   E +      + + +   ++L+K       ++     K  +         +  +GR
Sbjct: 262 AA-VHELLKSAQGDVAEVLTIRQKLAKSSVKKYTAMKQVAGKDDRARGLIQFYGANRSGR 320

Query: 713 LASLEPNLQNIP----------------------------IKTDLGQKIRRAFISPPTKK 744
            A     +QN+P                            +   L + IR AFI     +
Sbjct: 321 YAGRLIQVQNLPQNHVPDLKEARDLVRASNLEALDMLYPSVPDLLSELIRTAFIPKEHHQ 380

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--PQMRRHAK 802
            I AD+S IE R++A +A      +VF     I+   A+++F V +E++     +R+  K
Sbjct: 381 FIVADFSAIEARVIAWLAGEAWRNEVFATHGKIYEASASQMFNVPLEEIDKGSPLRQKGK 440

Query: 803 TINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT----KNFVR 854
               ++ YG S   L    A  + +   E    ++ +    P I ++        +  V+
Sbjct: 441 ISELALGYGGSVGALRAMGALDMGVEEEELKPLVQAWRQANPKIVQFWWAVDQAAQKAVK 500

Query: 855 QNGYVETIFGRRIH---------------------------------YDEINSPKSSIR- 880
           Q     T      +                                 ++ I + K   R 
Sbjct: 501 QRTTTSTHGISFTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGREGLCFEGIGATKKWERI 560

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
           +      +   +Q  + D+   AM  + +          +++ +HDE+V E 
Sbjct: 561 DTYGPKLVENIVQAVSRDLLAHAMQRIEQE------GYAIVMHVHDEVVVEA 606


>gi|32442289|gb|AAP82215.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 150/357 (42%), Gaps = 50/357 (14%)

Query: 513 LSYTRKEILKSRKS-------SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           L +   +I+K ++           ++ +++ + ++ A+E+     ++    +PKL+ +KL
Sbjct: 76  LEHNVAKIIKQQEKNGFFFNTQQAMELLAELKAKQLAVED-----EVHSTFKPKLVDDKL 130

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE--ISKNLLSLEENIYDLSGEKFNL 623
           +  Y + D      +S+  +T  + D+  +K  S E  + + L+             FNL
Sbjct: 131 VTPYVKKDGE----LSKRGMTDEEYDR-CIKTQSVEPFMRQKLVD------------FNL 173

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKS 682
            S KQ+G+ L      P    T TGQ       L++I    +  +I + L +++     +
Sbjct: 174 GSRKQIGEYLIDFGWIPK-KFTPTGQPIVDEGTLKKIEHIREAKLIADFLLYQKRIAQVT 232

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPP 741
           +  D L      +  RVH       T+TGR+    PN+  +P   +  G++ R  +  P 
Sbjct: 233 SRIDEL------KDDRVHGSVIPNGTITGRMTHRNPNMAQVPNAGSPYGKECRSCWTIPE 286

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            +KL+  D S +ELR+LAH        +   N  DIH          N      + R  A
Sbjct: 287 GRKLVGIDASGLELRMLAHYMNDPEYIEEVVNG-DIHT--------TNQNLAGLKTRDQA 337

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
           KT  ++++YG    ++ +       +  +  + +F   P +    EK +    + GY
Sbjct: 338 KTFIYALVYGAGDAKIGSVAGGGLKKGKELKQTFFKNLPSLKNLKEKVQK-ASERGY 393


>gi|167947001|ref|ZP_02534075.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 112

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 156 DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
           +T+ E   D + V+ K+G+ PE+++   AL GDS DNIPG+P  G KTAA  L +YG+L+
Sbjct: 4   NTMSESYTDRDGVVAKFGVTPEQIIDYLALVGDSADNIPGVPKCGPKTAAKWLGQYGDLD 63

Query: 216 NILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPIT 256
           N++ +A  IK  K  EN+    E   LSR+L  ++ DV + 
Sbjct: 64  NLIAHADEIKG-KIGENLRASLEQLPLSRQLATIKLDVALE 103


>gi|302840030|ref|XP_002951571.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
 gi|300263180|gb|EFJ47382.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
          Length = 1758

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 37/215 (17%)

Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKV-----------------------SPQMRR 799
           K   + + FE   D H   A  ++    E V                           RR
Sbjct: 2   KCRSMKEAFELGGDFHSRTAYGMYEYIQEAVKNGECYLEWEGQGEPDKPLVKDKYASERR 61

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK +NFSI YG +   LA   +  + EA + + ++         Y ++ + F      V
Sbjct: 62  KAKVLNFSIAYGKTAHGLAVDFKTTKEEAQETVDKW---------YSDRWEEF-----KV 107

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
            T+ GR      I+SP   +   + RAAIN PIQGSAAD+   AM+++HKS        K
Sbjct: 108 RTLLGRTRPLPNISSPDFRLSGHSNRAAINTPIQGSAADVAAAAMVAIHKSEALRATGFK 167

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           +L+QIHDE++ E P +    A ++++  M      
Sbjct: 168 LLMQIHDEVILEGPRDRSEDAKRLVMELMANPWAE 202


>gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul]
 gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul]
          Length = 693

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 96/639 (15%), Positives = 204/639 (31%), Gaps = 144/639 (22%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM----RGFEDIMLMSYVLDSGRSSHDIA 506
           + +++  E+ + +K   N ++++ V+ R  + +    + +   M  +Y+L S   + ++ 
Sbjct: 57  AEVREALEDPNVIKRAWNAQFER-VMTRRVLKINTPYKNWRCTMARAYML-SFAGNLEM- 113

Query: 507 SIAQKWLSYTRKEI-LKSRKSSIPIDKISDS----------QVQEHAIENSNVILQLWLL 555
                 L   + ++ L + K  I +                  Q +  E  + ++     
Sbjct: 114 --VGGQLGLPQDKVKLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFEWDDFLIYNQQD 171

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEIT--GIQIDQDLLKQVSAEISKNLLSLEENI 613
           +  +  +++ L  Y  LD+          I   G+ +D D     +A   +  L L   +
Sbjct: 172 VIAEAAIDEWLAPYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQM 231

Query: 614 YDLSGEKFNLSSPKQLGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
             ++G + N +SP+QL   +  +  +F    K    +     +D   +    + ++K   
Sbjct: 232 RAITGLE-NPNSPQQLKPWVKARGYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKM-- 288

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK------ 726
              Q ++          + +    +         +  T R A     + N+         
Sbjct: 289 -RMQSARTSVGKYKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEP 347

Query: 727 -------------------------------TDLGQKIRRAFISPPTKKLISADYSQIEL 755
                                            L   +R A  +P   + ++ D S IE 
Sbjct: 348 DGDNDWALCTVTNAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIET 407

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY----- 810
            ++A +A   PL  VF      +R  A  ++GV   +V+ QMR  +K       Y     
Sbjct: 408 VVIAWLADCQPLLNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGG 467

Query: 811 ---------GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN----- 856
                    G+  +     + + R EA D +K Y   +P + +  +  +  + +      
Sbjct: 468 DLSHEGKRTGLWGYAENMGIDMSRQEAHDSVKMYREAYPEVPQLWKDLEAAIIRTIKTKA 527

Query: 857 ----GYVE-----------TIFGRRIHY--DEI--------------------NSPKSSI 879
                YV               GRR++Y    I                     SP++  
Sbjct: 528 VTRVRYVSFEIVGEFLVAILPSGRRMYYHRPRIEKKKFQKKNWKTGELLWNEDGSPQTYE 587

Query: 880 RNINERAAIN------------------APIQGSAADITRRAMISVHKSLEDHKLATKML 921
           +        N                    +Q  A +I +  + + HK      L   ++
Sbjct: 588 KIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIAREILKYGLFNAHK----KGLN--IV 641

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           L +HDE+V      + +    ++   M         + V
Sbjct: 642 LHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPV 680


>gi|302789077|ref|XP_002976307.1| hypothetical protein SELMODRAFT_105035 [Selaginella moellendorffii]
 gi|300155937|gb|EFJ22567.1| hypothetical protein SELMODRAFT_105035 [Selaginella moellendorffii]
          Length = 277

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 9/243 (3%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102
            LW +    R+  +      +FD      +R ++ P YKA R K  + L P     R   
Sbjct: 28  FLWWMRAFLRRIVLDDPVIAVFDGEFGNDYRRKLLPSYKAGRRKF-KPLDPSFKWTRGIV 86

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----V 158
            +  I  ++    EADD++AT             I S DKD  QLVS    L        
Sbjct: 87  LSVDIHVVKADNAEADDVVATLARQVNDRSLKAVIASRDKDFKQLVSENVELLIPFADLR 146

Query: 159 KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           +     ++  +++    P   +  + L GD+ D +PG+PG G KT+  L++++G+LEN+L
Sbjct: 147 RWSFYTVKDDVEQHKCEPGIELGHRCLLGDAADGVPGVPGFGRKTSLKLMRKHGSLENLL 206

Query: 219 --INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLISF 275
                  + +   ++ + E++     + K++ LR D+ + +P+E  +  D +       +
Sbjct: 207 SAAAIRTVGKPYIQDALKEHSVLLEKNLKVLSLRRDINVELPVEWCLSRDKSSDLAAFEW 266

Query: 276 LKA 278
           L+ 
Sbjct: 267 LEK 269


>gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1]
          Length = 645

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 102/628 (16%), Positives = 193/628 (30%), Gaps = 137/628 (21%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM--RGFEDIMLMSYVLDSGRSSHDIASI 508
            L++  E+    K   N ++++++  R  GI    + +   M ++Y+L           +
Sbjct: 25  ELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAWRCTMALAYML-----GFAGDLL 79

Query: 509 AQKWLSYTRKEILKS--RKSSIPIDKISDSQVQEHAIE---NSNVILQLWLLLRPKL--I 561
           A        ++ LK    K  I +        +++  E    +      W   +  +  +
Sbjct: 80  AVGTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEATDPEDWWHFCKYNIRDV 139

Query: 562 VEKLLHVYERLDKPMIDVVSQM-------EITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
             +L      +  P++D    M         TG+ ID++      A        + E + 
Sbjct: 140 ETELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYSALALAEARKPQIIEEMA 199

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
           D++G   N +SP QL   L  +  +P          K   +  E  N  D   I+ +   
Sbjct: 200 DITGLN-NPNSPAQLTPWLKER-GYPFSDLRSDTVNKVIREADE--NGVDPEAIRVLQMR 255

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-------- 726
              +K   +   ++ +   +  +   +     ++ T R A      QN+P          
Sbjct: 256 LNSAKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRIQTQNLPRTPKLIEDVT 315

Query: 727 -------------------------TDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761
                                      L   IR AFI  P  K I AD S IE  ++  +
Sbjct: 316 DLSIVNKMIHQRDLDALTLYVGEPMDALVGCIRSAFIPTPGHKFIVADLSSIESVVIGWL 375

Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY----------- 810
                         D++R  AA    +  E+ +   R  AK       Y           
Sbjct: 376 TDCKWFMNTLAAKHDLYRSFAAHWLHLPYEE-TKPHRSKAKPATLGAGYRLGGGHMDENG 434

Query: 811 ---GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI--------------------- 846
              G+  +     + + + EA + ++ +    P I                         
Sbjct: 435 KKTGLWGYAENMGVHMTQKEAEESVQAFRDLCPEIVRAWYDLENAVFKVIRTRQAVVWGC 494

Query: 847 ------------------------------EKTKNFVRQNG--YVETIFGRRIHYDEINS 874
                                         + T     + G  Y +T F      +   +
Sbjct: 495 LIIEYTKPFLTIRLPSGRKMYYFRPRLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGT 554

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               I +   +   N  +Q  A D+    +       + H++  ++++ IHDE+V EVPE
Sbjct: 555 KWGKIYSHGGKLVEN-IVQALARDVLAEGLK------KAHRMGFRIVMHIHDEIVTEVPE 607

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPL 962
           +   T   +I   M  A        +PL
Sbjct: 608 DSPLTVDDLI-SCM--AAELPWAEGLPL 632


>gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
 gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
          Length = 668

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 114/676 (16%), Positives = 211/676 (31%), Gaps = 125/676 (18%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTL---DQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 S  I T +        + I+ +      Q  D    +     D       D T 
Sbjct: 1   MAKHHLSIDIETRSS-------VDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTA 53

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI--SMRGFEDIMLMSYVLDSG 499
             +   EI     +   +   +K  +N  ++   L+R G    +  +   M  ++ L  G
Sbjct: 54  DESFPPEIWE---EALRDPDVIKHAYNAAFEWYCLNRAGYATPLDQWRCTM--AHGLYCG 108

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL---WLLL 556
            ++  + +  +       K+ L   K+ I    +     + +     N        W L 
Sbjct: 109 YTA-GLDATGKAIGLPQDKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLF 167

Query: 557 RP--KLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQVSAEISKNL 606
           +   +  V     +  RL+   +         +   M   G+++D  L+         + 
Sbjct: 168 KEYCRQDVVTEHEILRRLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVST 227

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTAQDLEQINCGDN 665
             L     +L+G   N +S  QL   +    K  P          K T ++  +      
Sbjct: 228 EKLTAEAVELTGLD-NPNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLP 286

Query: 666 PIIKNILEW-RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
             +  +LE  +QL K       ++     +  +         +  TGR A     LQN+P
Sbjct: 287 EDVARMLEIRQQLGKTSVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLP 346

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       +   L Q IR AFI     K + AD+S IE R
Sbjct: 347 RNYLKTLDYARELVKAKNYDGLRILYGNVPDTLSQLIRTAFIPSEGHKFVVADFSAIEAR 406

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP-----QMRRHAKTINFSIIYG 811
            +A +A    + +VF     I+   AA++FGV +E+++       +R+  K    ++ Y 
Sbjct: 407 AIAWLAGEQWVNEVFATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQ 466

Query: 812 ISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ----------NG 857
            S   L    A ++ +   E  D + R+ +    I       +N   +          NG
Sbjct: 467 GSTAALIAMGALKMGLTEDELPDIVTRWRNANKRICGLWYAVENTALRVMQTAQPQGLNG 526

Query: 858 ----------------YVETIFGRRIHYDE-------------------INSPKSSIRNI 882
                            V    GR+++Y +                     + K  I + 
Sbjct: 527 LIFALEGDLIYGQSFLTVRLPSGRKLYYPKPFLQENRFGKQAIHYYAVGQQTRKWEIDST 586

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942
                    +Q  A D     +    + +    L T  +  +HDE++ + P   + T   
Sbjct: 587 YGGKMTENIVQAIARDCLAVTL----RRIAQKGLQT--VFHVHDEVIIDAP---METTVD 637

Query: 943 IIVHSMEKACLPKINL 958
            I   M +       L
Sbjct: 638 EICDLMAEPIPWAPGL 653


>gi|32442293|gb|AAP82217.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 151/426 (35%), Gaps = 74/426 (17%)

Query: 488 DIMLMSYVLDSG-RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D +++S + +      H + +  ++   +  K   +    +   + ++      +  ++ 
Sbjct: 1   DTLVLSSLANPSLEGGHSLKAWGERI--HNLKGDYEGGWETFNPEMLA------YCQQDV 52

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            ++  L+  L  +L       +   L+  + +++ + E TG+  D+    ++ AE+ + +
Sbjct: 53  RLLKDLYRRLEVQLEDFDEASI--ELEHKVAEIIYRQEQTGVLFDERKGYELLAELKEKV 110

Query: 607 LSLEENIYDLSGE----------------------------------------------K 620
             +   + ++                                                 +
Sbjct: 111 HEIVLEVREVFKPLPVWKSLQVLKNPLKKDGNPSVAYQKQLDRGAHYDSDGDWGYKDYPE 170

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNL S +Q+   L     +     T  G      +    +   D P  K I+E+  +SK 
Sbjct: 171 FNLGSRQQVSRYL-QHFGWSPTEWTDKGSVIVNEKV---LADVDIPEAKMIMEYFTISK- 225

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +     +    +     R+H   +    +TGR+   +PNL  +P I +  G++ R  +I 
Sbjct: 226 RVAMVKAWLEAVGDDG-RIHGRVNSCGAVTGRMTHSKPNLAQVPAIYSPYGEECRELWIV 284

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           P  K L+  D S +ELR+LAH            N  DIH          N      Q R 
Sbjct: 285 PEGKCLVGIDASGLELRMLAHYMNDKDYTDEILNG-DIHTA--------NQLAAGLQSRD 335

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKT  ++ +YG    ++   +     +      ++    P + E +    +     G++
Sbjct: 336 QAKTFIYAFLYGGGDGKIGEIVGGKAKDGQRLKAKFLDNTPALRE-LRGEVDRGSSKGWM 394

Query: 860 ETIFGR 865
           + + GR
Sbjct: 395 KGLDGR 400


>gi|317124628|ref|YP_004098740.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
 gi|315588716|gb|ADU48013.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
          Length = 557

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/515 (15%), Positives = 181/515 (35%), Gaps = 87/515 (16%)

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           D+   A++    +  E+L            S +   E     +++ L++  +    L   
Sbjct: 85  DLFDHAER----SVDEVLTDSGHLRADALGSWATTTERLARLAHLALEIQRVQEASLRER 140

Query: 564 ---KLLHVYERL--DKPMIDVVSQMEITGIQIDQDLLKQVS----------AEISKNLLS 608
              +   +   +  +     +  ++E  G+ +D+   + +              +  + +
Sbjct: 141 AGGRAERLIRTVWSESAAAVLCLELERDGLPVDRLAAEDLISAAAGPRPRDDADAARIRA 200

Query: 609 LEENI---YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L + +   +   G++ +L +P  +  +L +                 T   + +     +
Sbjct: 201 LRDQVVLRHARGGDRTDLRNPAHVRAMLQSVGVDVPN----------TRAWVLEPYRHTH 250

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
           P++  +L WR+  +I +TY     +       R+   ++      GR+ + +  L N+P 
Sbjct: 251 PLVDALLSWRKDERIATTYGYRWLDEHVGGDDRLRGAWTACDGAAGRMTA-QNGLHNLPA 309

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
                  +R A  + P    + AD  Q+E R+LA +++     +   +  D++  VA ++
Sbjct: 310 P------LRPAIRAEPQHVFVRADLGQVEPRVLAVVSEDRAFAEATRSD-DLYAPVADKL 362

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
            GV+        R  AK    + +YG                A + +K     +P     
Sbjct: 363 -GVD--------RSVAKVAVLAAMYGQRSGA-----------AGEALKDLEAAYPVAMGV 402

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYD------------------------EINSPKSSIRN 881
           +++          + T  GR I +                          ++  + +   
Sbjct: 403 LDRAYADGVARRPLRTFGGRLIRFGSAGDAADPTRAEGHADQEGEPSGIRLDGDRGAADA 462

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
              R A NA IQGSAA++ +    +V  ++    L  +++L +HDE++  VP      A 
Sbjct: 463 ARGRFARNAIIQGSAAELFKAWAATVRHAVR--PLGGQIVLCLHDEILVHVPRSRAEEAR 520

Query: 942 QIIVHSMEKAC-LPKINLRVPLKVNIKVSNNWQEE 975
           + +  ++  A         V    +  V   W E 
Sbjct: 521 RAVEGALTLASRTWAGTEHVRFVADTGVITRWSEA 555


>gi|255591756|ref|XP_002535585.1| DNA polymerase I, putative [Ricinus communis]
 gi|223522595|gb|EEF26798.1| DNA polymerase I, putative [Ricinus communis]
          Length = 409

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 21/282 (7%)

Query: 9   LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           L D ++  +  +Y        +  L  +AIAGF   +       R     +   +I    
Sbjct: 5   LTDANALGFAEYYLRQKAENAN--LANHAIAGFLEHIR-----GRLRYDPTVIPIIIWDG 57

Query: 69  AVTFRNEIYPDYKANRPKIPE------MLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
              +R ++ P YK+ R + PE         PQ   +R A + F +  I   G EADD+  
Sbjct: 58  RAQWRYDLLPTYKSGRHRTPEQRADRAAYEPQRLHIRHALRFFPVIQILHPGAEADDVAY 117

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK-EEKIDIEHVIKKWGI-PPEKMV 180
             ++    +G  V + ++D D MQ V P     +  K  + I++E   +  G   P    
Sbjct: 118 GLSHQLAAQGHLVDLHTSDTDWMQTVGPRVRWVNARKAAQVIELEGFARATGFATPALYA 177

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI----KQKKRRENIL-- 234
             +AL GD  D+I G+PG+    A+ L+ +YG++  +L  A  +    ++ K   +++  
Sbjct: 178 QGKALAGDDTDDIIGVPGVAMGRASALIAKYGDVAGVLHAAEDVFTFSQEPKYYRHLMLP 237

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           E  E  R +  LV L    P+      + +       L  F 
Sbjct: 238 EVREQVRKNLPLVDLSLAPPLKGADIQVEVGAFEELELAEFF 279


>gi|269956874|ref|YP_003326663.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305555|gb|ACZ31105.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
          Length = 546

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 83/556 (14%), Positives = 172/556 (30%), Gaps = 91/556 (16%)

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLD-SGRSSHD---------IASI 508
           +        +       L   G+ +    D+ L   +L  S  ++H             +
Sbjct: 22  DPETRWAWDDTNRWYPGLLDDGVRVERAHDLRLAHAILRRSPLTAHTPFARAPAGPWDRL 81

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
                         + K+    D + D+    +   +    L+              L  
Sbjct: 82  EPAPAGPPPPVPGLAPKAEGLFD-LDDASPGPYDGLDPAAELRAQEAAVADARDPGRLRF 140

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQ-VSAEIS---------KNLLSLEENIYDL-- 616
               +     V +++  TG+    D+    ++  +            L +L   I +L  
Sbjct: 141 LLAAESAGALVAAELHHTGLPWRADVHDAILTQRLGPRPPFGQRPARLEALAVRIRELLD 200

Query: 617 SGEKFNLSS-PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           +    N  S P  L  + +  +   S +               ++    +P+++ ++E++
Sbjct: 201 APPTLNPDSHPSLLKALQYAGIGVRSLS-------------QWELMEVQHPVVEPLMEYK 247

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
           +LS++ +    +  +    R  R  + Y +   +TGR +S+      +P       ++RR
Sbjct: 248 KLSRLLTANGWNWLDTWV-RDGRFRSEYVVGGVVTGRWSSVGGGALQLPK------EVRR 300

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
           A ++ P   L+ AD +Q+E R+LA +++   +            +VA+          + 
Sbjct: 301 AVVADPGWTLVVADVAQLEPRVLAAMSRDDAMAAAGRGGDMYAGIVASG---------AV 351

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
             R  AK      +YG +    A  L                 FP     +E       +
Sbjct: 352 ATRDLAKVGMLGAMYGGTTGASAQVL-----------PSLARTFPRAIALVEDAARAGER 400

Query: 856 NGYVETIFGRRIHYDEIN--------------SPKSSIRNINERAAINAPIQGSAADITR 901
              V T  GR       +              +   S      R   N  +QG+AA+   
Sbjct: 401 GEVVSTWLGRGSPRPGADWERAQAGAYDADDGARARSYTRSFGRFTRNFVVQGTAAEWAL 460

Query: 902 RAMISVHKSLEDHKLAT----------KMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
             + S  + L                  +   +HDE+V   P       ++ +  +  +A
Sbjct: 461 AWLASARRRLWALGEHGTGDGVFANRPHLAFFLHDEVVVHTPAAMADDVARELREAAAEA 520

Query: 952 C---LPKINLRVPLKV 964
                    +  PL V
Sbjct: 521 GRLLFGDYPVEFPLTV 536


>gi|32442291|gb|AAP82216.1| DNA polymerase [Podovirus SOG]
          Length = 401

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 153/420 (36%), Gaps = 78/420 (18%)

Query: 488 DIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS-DSQVQEHAIEN 545
           D +++S +    R S H + +   +         +   K   P+D      Q+ E+   +
Sbjct: 1   DTLILSRLFRPIRESGHSLKTWGYR---------VGFAKQEQPLDFDEYTPQMLEYCCND 51

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             +   ++L L  +            L+  +  ++S  E  G   ++     + A++   
Sbjct: 52  VRLNELVYLSLLKE--QAGFSPQSIALEHAVAKIISDQENNGFAFNEKQATMLLAKLKDK 109

Query: 606 LLSLEENI-----------------YDLSGE----------------------------- 619
           +  + + +                 +   GE                             
Sbjct: 110 MYEVTDEVQRTFKPRMVDVKLVVPKFKKDGELSKSGLTTEEYDTCMTQKKYQPFMRQELQ 169

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN--PIIKNILEWRQL 677
           +FNL S KQ+G+ L     +     T TGQ       L++I       PI   +L  +++
Sbjct: 170 EFNLGSRKQIGEYLMD-FGWEPKRFTPTGQPIVDEGTLKKITHIHEAKPIADFLLYQKRI 228

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRA 736
           ++I+ ++ D+L     +   RVH       T+TGR++   PN+  +P + +  G + R  
Sbjct: 229 AQIQ-SWLDAL-----EEDGRVHGSVIPNGTITGRMSHNHPNVAQVPAVYSPFGVECRAC 282

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           +       L+  D S +ELR+LAH            N  DIH     ++ G+       +
Sbjct: 283 WTVEEGNVLVGVDASGLELRMLAHYMNDEEYINEVVNG-DIHT-TNQKLAGL-------E 333

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            R  AKT  ++++YG    ++ + +   R +  +   R     P +    EK +   ++ 
Sbjct: 334 SRDTAKTFIYALVYGAGDEKIGSVVGGSRKQGKELKNRSLTNLPALKTLKEKVQQAAKRG 393


>gi|32442279|gb|AAP82210.1| DNA polymerase [Podovirus SOG]
          Length = 406

 Score =  131 bits (329), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 81/431 (18%), Positives = 161/431 (37%), Gaps = 78/431 (18%)

Query: 488 DIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D +++S + D  R   H + +++             + K           ++  +  ++ 
Sbjct: 1   DTLILSRLADPTRKGGHSLNALS------------GNEKIDFHDFSTYTPEMLTYCKQDV 48

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            +  +++L L+ +L       +  +L+  M  +V + E  G  +D D+ +++     +  
Sbjct: 49  AINEKVYLQLKDELSNFGKASI--QLEHQMQAIVCEQEKNGFMLDTDIAEEIYTTCLRET 106

Query: 607 LSLEENIYD---------------------------------------LSGEKFNLSSPK 627
             +E  I +                                       ++ E+FNL SP 
Sbjct: 107 NRIEAEIKEFMVPIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTKIAWEEFNLGSPV 166

Query: 628 QLGDILFTKLKFPSGAKTKTG-QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           Q+   L  +L +    KTK+G  +K   ++L  I       +K +  W+ L        +
Sbjct: 167 QVNKRL-DRLDWKPTVKTKSGNSYKICPENLATIPDTAPEAVKGLKAWKVLETRWKLAQE 225

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI------------KTDLGQKIR 734
            L    ++ T RVH    L   +T R A   PN+ NIP             +   G + R
Sbjct: 226 WLQK--SQETGRVHGRVILTGAVTHRAAHQGPNMANIPSVPHGKDGILWKMEGMYGAECR 283

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           +AF  P  K L+  D + I+LR+LAH        +   +  DIH       F        
Sbjct: 284 QAFKVPEGKLLVGTDAAGIQLRVLAHYMNDPIYTEQVIDG-DIHT------FNKEALGRF 336

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            + R  AKT  ++ + G     +A+ L     +A + +  ++   P + + ++   +   
Sbjct: 337 CKDRPTAKTFIYAFLLGAGTGMIASILGCNNRQANEAMSNFYEAIPALKK-LKSQASQAA 395

Query: 855 QNGYVETIFGR 865
             G+++ + GR
Sbjct: 396 SMGWIKGLDGR 406


>gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173]
          Length = 169

 Score =  131 bits (329), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 21/185 (11%)

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP        +RR F +      + AD+SQIELRI A       + + F+   D
Sbjct: 1   DPNLQNIPKD------LRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRD 54

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT-----QLRIPRSEAADY 831
           +HR  A+ + G   E ++ + R+ AK +NF +IYGIS   L+       + +P  EA   
Sbjct: 55  LHRYTASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAI 114

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            +R+F  F G  ++  K K  +++ G           Y     P +          +N P
Sbjct: 115 RERFFSYFEGFKDWHNKVKEELKKTGKSSGHTLLGRSYVAHTFPDA----------VNYP 164

Query: 892 IQGSA 896
           IQG+ 
Sbjct: 165 IQGTG 169


>gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 952

 Score =  130 bits (328), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 96/262 (36%), Gaps = 50/262 (19%)

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
             L Q IR AFI     + I +D+S IE R+LA +A    +   F+N  DI+   A+++F
Sbjct: 672 DVLSQLIRTAFIPKEGCRFIVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQMF 731

Query: 787 GVNIEK--VSPQMRRHAKTINFSIIYGISPFRLATQ----LRIPRSEAADYIKRYFHRFP 840
           GV + K  V+  +R+  K    +  YG S   L       + +   E    +  +    P
Sbjct: 732 GVPVVKHGVNGDLRQKGKVATLACGYGGSVGALKAMGAIEMGLSEDELQSIVDSWREANP 791

Query: 841 GIHEYIEKTKNFVR------------------QNG--YVETIFGRRIHYDE--------- 871
            I        + V+                  + G  ++E    RR+ Y +         
Sbjct: 792 NIVSLWWDIDSVVKRVVKTRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFG 851

Query: 872 --------INSPKSSIR-NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
                   I       +        +   +Q  A DI   AM+ + K          +++
Sbjct: 852 GESIVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKK------GFNIVM 905

Query: 923 QIHDELVFEVPEEEITTASQII 944
            IHDE+V E     I   ++I+
Sbjct: 906 HIHDEVVIESDSSSIEEINEIM 927



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 123/384 (32%), Gaps = 53/384 (13%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  + T              +    + +D    +    ID       D +    + 
Sbjct: 1   MKKLSIDLET----YSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-G--ISMRGFEDIMLMS-YV------- 495
           +EILS L     ++   K   N  ++++ L R+ G  +  +G+   M+ S Y+       
Sbjct: 57  EEILSAL----SDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLE 112

Query: 496 -------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ---VQEHAIEN 545
                  LD  + +   A I  ++ S   K    +   +  +      +    +E+   +
Sbjct: 113 KVGEVLKLDKQKMNEGKALI--RYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRD 170

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
               +++   L    + +     Y         V   +   GI ID+ L+          
Sbjct: 171 VETEMEIKKKLSAFPMPQSEWENYW--------VDQNINDRGILIDEVLVDSAIKFDEIL 222

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTK-LKFPSGAKTKTGQWKTTAQDLEQINCGD 664
                +   +L+G + N +SP QL + L  K L+  S AK               +   +
Sbjct: 223 REENMDRAIELTGLE-NPNSPMQLKEWLNEKGLEIDSLAK---------KDVESALKNAE 272

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA---SLEPNLQ 721
             I + +   ++LSK      D++ N      +         +  TGR       E    
Sbjct: 273 GDIKEVLELRQELSKSSVRKYDAMKNVKGNDKRVRGLLQFYGANRTGRYCLTGDHEVLTD 332

Query: 722 NIPIKTDLGQKIRRAFISPPTKKL 745
              ++ D       A  +   +K+
Sbjct: 333 KGWVRLDKWNGGNIACWNTIGEKI 356


>gi|239908264|ref|YP_002955005.1| hypothetical protein DMR_36280 [Desulfovibrio magneticus RS-1]
 gi|239798130|dbj|BAH77119.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 1507

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 28/288 (9%)

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            + ++  +  +   T TGR            I + L +K R  F+      +++ D    E
Sbjct: 1237 KDEKFPSIINQIETTTGRSGYR--------ILSTLNKKFRLLFLPSEGHVILAFDMKHFE 1288

Query: 755  LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814
              I++ ++  T    +  +  DI+  VA  I G   E+     R   K +    I G + 
Sbjct: 1289 PTIISSLSNDTYALGLINSGKDIYTEVAMSISGALNEE-RFNDRSFGKVLFNIAINGGNE 1347

Query: 815  FRL-----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869
              L      T + I RS +A+    + + FP I ++  +  +  R  G + T F R ++ 
Sbjct: 1348 HALVSRCYETNVIITRSCSAEIFNNFRNMFPVIFQFQNRILHMARTYGKMYTKFSRVLYV 1407

Query: 870  DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH-DEL 928
            D+         N+ +   +N  +QGS AD  +R ++ V+  L   +     +L  H D L
Sbjct: 1408 DD---------NVKDSTIVNFVVQGSGADAFKRLLLKVNDFLNHPEED---ILFHHFDAL 1455

Query: 929  VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
              +VPE       + +   +E +        V   V   +  +W EE+
Sbjct: 1456 YIQVPEHGAAKRMEALREIIEDSLSSDFG-NVRFSVAASMRRSWAEED 1502


>gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis]
          Length = 158

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 8/144 (5%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
            +R  F +P    +I+ADYSQIELR++A   K   + + F+ + D+H++ A+ I G N E
Sbjct: 3   DLRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKNYE 62

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           +++ + R  AK INF +IYGISP  L         + I   EA  + K +F  +  I ++
Sbjct: 63  EITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINITLPEANKFHKNFFEFYKDIKKW 122

Query: 846 IEKTKNFVRQNGYV--ETIFGRRI 867
            E+TKN +  +GY+  +T+ GRRI
Sbjct: 123 HEETKNHLNHHGYIIAKTLLGRRI 146


>gi|291335384|gb|ADD94998.1| DNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
          Length = 217

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 102/238 (42%), Gaps = 27/238 (11%)

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
           ++ AD S IELR+LAH          ++       ++  +I  +N +K+    RR  KT+
Sbjct: 1   MVGADLSGIELRMLAHY------LARYDGGRYAKLLLEDDIHQINADKIGI-SRRQVKTV 53

Query: 805 NFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
            ++ +YG    ++             + +  +    Y     G+ + ++  K    + G+
Sbjct: 54  TYAFLYGAGDEKIGHSYDPQLSTTAAKKKGKEIRAAYVDAVDGLDDLLKAIK-QAAERGF 112

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           + +I GR+++ D            +   A+N  +Q  A  I +R M+   +++ + ++  
Sbjct: 113 IRSIDGRKVNVD------------SPHKALNYCLQSGAGVIAKRWMVINQETMREAQICA 160

Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
             L  IHDEL FE   E +   S  +V+S   A     N+R+ +       NNW E +
Sbjct: 161 SQLGFIHDELQFECAPEHVGDLSTSLVYS-ATAAGEYYNMRIRIDAEATHGNNWSETH 217


>gi|238059068|ref|ZP_04603777.1| LOW QUALITY PROTEIN: 5'-3' exonuclease [Micromonospora sp. ATCC
           39149]
 gi|237880879|gb|EEP69707.1| LOW QUALITY PROTEIN: 5'-3' exonuclease [Micromonospora sp. ATCC
           39149]
          Length = 250

 Score =  130 bits (326), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 12/130 (9%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
           +  + L+D  S  +RA++  P  + R  DG PVNA+ GF +ML  L++  R +       
Sbjct: 99  QPPILLIDAPSLYFRAYFGVPESAARATDGTPVNAVRGFLDMLATLVRTRRPDR----MV 154

Query: 63  VIFDYP-AVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
              D+     +R  + P YKA+R       ++P+ L PQ+P++     A GI A+   G+
Sbjct: 155 CALDHDWRPDWRVALLPSYKAHRVAPEGGEEVPDTLTPQVPVILDVLAAIGITAVGAAGY 214

Query: 116 EADDIIATYT 125
           EADD++ T +
Sbjct: 215 EADDVLGTLS 224


>gi|255571798|ref|XP_002526842.1| DNA polymerase I, putative [Ricinus communis]
 gi|223533846|gb|EEF35577.1| DNA polymerase I, putative [Ricinus communis]
          Length = 411

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 110/271 (40%), Gaps = 42/271 (15%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL------------------------- 95
            AV+        R ++ P YKA+R K     L Q                          
Sbjct: 135 IAVLDGEGGHEHRRKLLPSYKAHRRK----FLSQSSAFQKFSKGQSSAFKRSSKGHVTRS 190

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
            +V        +P ++I+G EADD++AT      + G+   + S DKD  QLVS    + 
Sbjct: 191 EVVMDVLTKCNVPVVKIEGHEADDVVATLVEQVLQRGYKAVVASPDKDFKQLVSEDVQIV 250

Query: 156 DTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI----PGIGYKTAALL 207
             V E        I+H I ++   P   + L+ + GD +D IPGI    PG G KTA  L
Sbjct: 251 LPVTELKRWSFYTIKHYIAQYNCDPCSDLSLRCIMGDEVDGIPGIQSVAPGFGRKTALKL 310

Query: 208 LQEYGNLENIL--INASRIKQKKRRENILEYAETARLSRK---LVMLRTDVPITIPLEHL 262
           L+++G+LEN+L       + +   ++ + ++A+  R + +   L         TI    L
Sbjct: 311 LKKHGSLENLLNVAAIRTVGKPYAQDALTKHADYLRRNYEVLALRRCWKKRKYTITKIDL 370

Query: 263 ILEDCNGPRLISFLKALEFTKLINRVATTYD 293
           I +    P  ++  +         R  +T D
Sbjct: 371 IFQMVKPPTALAVPRQRREFSHAKRCFSTLD 401


>gi|328479632|gb|EGF48820.1| DNA polymerase I [Lactobacillus rhamnosus MTCC 5462]
          Length = 105

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  +I+S   ++R   ER A+N PIQGSAADI + AMI + K+L++  L  KMLLQ+HDE
Sbjct: 1   YLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDE 60

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           L+FE P  E+    Q++   M+ A    ++L VPLKV       W + 
Sbjct: 61  LIFEAPTAEMAQLGQLVPKIMDSA----VSLAVPLKVESHYGPTWFDA 104


>gi|302838945|ref|XP_002951030.1| hypothetical protein VOLCADRAFT_117717 [Volvox carteri f.
           nagariensis]
 gi|300263725|gb|EFJ47924.1| hypothetical protein VOLCADRAFT_117717 [Volvox carteri f.
           nagariensis]
          Length = 455

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 84/216 (38%), Gaps = 24/216 (11%)

Query: 78  PDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTI 137
           P YKA R    E+    L  ++       +P +     EADD+       A + G AV I
Sbjct: 233 PSYKAGRTSKGEVFYADLSNLQRLLGLMSVPPLLRPWLEADDLAGLLVEQAVQHGMAVRI 292

Query: 138 ISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           +S D+DLMQL+                   V+   G+PP  +   +AL GD+ D +PG+ 
Sbjct: 293 LSGDRDLMQLLRE---------------ADVVSALGVPPALVADYKALVGDASDCLPGVN 337

Query: 198 GIGYKTAALLLQEYGNLENILINASRIKQKKRRE---NILEYAETARLSRKLVMLRTDVP 254
           GIG KTA  LL  YGNL  I      +  K+R      +     T  L+R L        
Sbjct: 338 GIGPKTAVSLLASYGNLAGIYRAVGEMTPKRRAALQSALPASQYTLTLARVLGTPGAPAL 397

Query: 255 ITIPLEH------LILEDCNGPRLISFLKALEFTKL 284
               L        L L   +   +   +  LE   L
Sbjct: 398 PAGVLSEELLQARLKLNGYDNDAVQKAVLELEMRSL 433



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 7  LFLVDGSSFIYRAF--YATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
          L ++DG+    R+F  Y +        G+P     G   +L   L++ +     ++ AV+
Sbjct: 6  LLIIDGNYLANRSFFGYGSGRGLSTSSGIPTTVTYGVMRVLQAALRSIQ----PTYLAVV 61

Query: 65 FDYPAVTFR 73
          FD    TFR
Sbjct: 62 FDARGPTFR 70


>gi|71402991|ref|XP_804342.1| mitochondrial DNA polymerase I protein D [Trypanosoma cruzi strain CL
            Brener]
 gi|70867265|gb|EAN82491.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            cruzi]
          Length = 1607

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 133/369 (36%), Gaps = 62/369 (16%)

Query: 661  NCGDNPIIKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLA 714
                +   + ILE R + K+  TY ++      + + ++     +H       T TGRLA
Sbjct: 1230 KTHGDKTAETILELRTMEKLIGTYYENTDDGTGMVSLVHSVDSCIHHELIHNKTNTGRLA 1289

Query: 715  SLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFE 772
            S  PN QNIP   +    +R  F+S   +K   I ADYSQ+E+  LA +A    + +   
Sbjct: 1290 SANPNCQNIPK--EDKSPLREMFVSRYGEKGMCIEADYSQLEVVALAVLADDFQMLEDLR 1347

Query: 773  NSLDIHRMVAAEI--------------FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
            +++D H    A +                   E V  ++R+ AK  +F   YG     ++
Sbjct: 1348 SNVDFHCKRVAMMRPDLQYTEVLLRAKKNKEPEFV--KLRQQAKIFSFQRQYGAGVKMIS 1405

Query: 819  TQLRIPRSEAADYIKRYFHRFPGIHEY----------IEKTKNFVRQN------------ 856
                + + +  + I++    + G+  +           + +     +N            
Sbjct: 1406 QSTGLTQDQVRNLIEKERETYRGVDAFNSMVALSANNFDASIQDGSRNVRGHQFFKGMFP 1465

Query: 857  -----GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS- 910
                  YV T            S  +   N +     N P+QG A +I +  +  + +  
Sbjct: 1466 VITGSRYVFTESDVPEGIMREKSMSAKSTNFSPTHLKNYPVQGFAGEIVQIMLGMLWRHF 1525

Query: 911  LEDHKLATKMLL--QIHDELVFEVPEEEITTASQIIVHSMEKA------CLPKINLRVPL 962
            L ++      +L   +HD +  +   +     +  +   M           P++N+ V  
Sbjct: 1526 LRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVADEVETIMSNVREVLNRLYPEMNITVDF 1585

Query: 963  KVNIKVSNN 971
              ++    N
Sbjct: 1586 PCDVVAGEN 1594



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 85/222 (38%), Gaps = 31/222 (13%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-------EDIMLMSYVLDSGR--- 500
           S      ++   + +GHNIK+D L + R    +R F        D M   Y+L       
Sbjct: 571 SLFLPPLDDYDVI-VGHNIKFDLLHIWR-DAELRRFLSRGGKVWDTMYAEYLLTGHEVKL 628

Query: 501 -SSHDIASIAQKWLSYTRKEILKSRKSSIPID--KISDSQVQEHA---IENSNVILQLWL 554
                +  IA+ +   T K        +   +  +I  + + E+    +EN+ +I +   
Sbjct: 629 GRGAGLEDIAKSYGGQTPKLDAVKEAWAKGKETYEIPYALLSEYLHGDLENTELIFRKH- 687

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            +   L+  ++  +        +   ++ME  G++ +  L    S E+   ++ L  ++ 
Sbjct: 688 -MERALLQRQV--IICTARMDGLLCTTEMEYNGLKTNVQLAVTQSNELMGKVVELRNHLD 744

Query: 615 DLSGEK--------FNLSSPKQLGDILF-TKLKFPSGAKTKT 647
           D   ++        FN SS + L    F  KLK  + A+   
Sbjct: 745 DAIPKEIPPDCRKYFNWSSNQHLIAFFFGGKLKLNTNARESK 786


>gi|156085240|ref|XP_001610103.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Babesia bovis
           T2Bo]
 gi|154797355|gb|EDO06535.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Babesia bovis]
          Length = 346

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/318 (23%), Positives = 120/318 (37%), Gaps = 70/318 (22%)

Query: 32  GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTF-RNEIYPDYKANRPKIPEM 90
           G  + AI GF N L ++ ++   +    +  + FD P     + E++P+YKANR  I   
Sbjct: 23  GTEIGAIVGFMNSLGRIYKSFGPK----YIGIAFDSPGSNSTKREVWPEYKANRQTIQTS 78

Query: 91  LLPQLPLVRLATQAFGIPAIEIQGFE-------------ADDIIATYTYIAEKE------ 131
              QL  ++      GIP    +  E               + I       E+E      
Sbjct: 79  FKKQLMWIKEFCAIIGIPVFLKRATEADDIIASMIGFLSGGNTINERAATGEEEVQRLKQ 138

Query: 132 ---------------------------------------GFAVTIISTDKDLMQLVSPT- 151
                                                   F V +++ DKDL+Q++    
Sbjct: 139 VDYRVPDSTSGGVFDRVLRSTGRELEPLDLCDSGDINHRKFDVHVLTADKDLLQVLEYND 198

Query: 152 ------TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
                   +    K   +D + VI ++GIPP +     AL GDS DNIPG+ GIG KTA 
Sbjct: 199 DANISVRIIQPHKKFRTVDEDTVIDEYGIPPSRFSEYLALVGDSADNIPGVMGIGPKTAP 258

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           +L+ +Y + + I+ +    K  KR E      + A     +  LR DVP+   L  L  +
Sbjct: 259 VLISKYNSFKQIIESDEIAKIAKRSEKHNVSVQRAYDFHLITKLRADVPVLSSLSQLCKK 318

Query: 266 DCNGPRLISFLKALEFTK 283
                + ++F +     K
Sbjct: 319 RTLESQFVAFCRMFSLQK 336


>gi|159038749|ref|YP_001538002.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
 gi|157917584|gb|ABV99011.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
          Length = 566

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 117/324 (36%), Gaps = 44/324 (13%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
             +   D+P +  +LE+++L +I + +  +  +    R  R    Y     ++GR A+  
Sbjct: 264 WVLRGVDHPAVPLVLEYKELYRIWTAHGWAWRDAWV-RDGRFRPEYVPGGVVSGRWATRG 322

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
                IP        IRRA ++ P   L+ AD  Q+E R+LA ++  T L         +
Sbjct: 323 GGALQIPK------VIRRAVVADPGWTLVVADAGQLEPRVLAAVSGDTRLAAAAGAGD-L 375

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           +  +A + FG +        R  AK      +YG +              AA  ++    
Sbjct: 376 YAALARDAFGGD--------RARAKVALLGAMYGQTGGS-----------AAPALEVLRR 416

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN------------SPKSSIRNINER 885
            +P    Y+E         G V +  GR      +               +S+      R
Sbjct: 417 NYPAAFAYVESAARSGESGGLVRSWLGRTCPPGSVGVDEEEPVPAGGEGGRSARARARGR 476

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
              N  IQ +AA+     +  +   L       +++   HDE++   P  +    +  + 
Sbjct: 477 FTRNFVIQATAAEWAATLLAMLRGEL--AGSDAELVFFQHDEVIVHCPTAQAAAVAAAVT 534

Query: 946 HSMEKA---CLPKINLRVPLKVNI 966
              E+A      +  +R PL ++ 
Sbjct: 535 RCGERASALLFGRTPVRFPLDLSA 558


>gi|312195229|ref|YP_004015290.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
 gi|311226565|gb|ADP79420.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
          Length = 586

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 124/316 (39%), Gaps = 28/316 (8%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +P+I  +L WR+  +I +TY             R+   +  +    GR+ + +  L N+P
Sbjct: 292 HPVIDELLAWRKAERIATTYGHRWLATHVGADGRLRGRWHGSDGAAGRMTA-DAGLHNLP 350

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                  ++R A ++ P  + + AD  QIE R+LA ++    L +      D++  VAA 
Sbjct: 351 A------EMRVAVVAEPGHRFVRADLGQIEPRVLAVVSGDPELTRATRQD-DLYAPVAAR 403

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           + GV+        R  AK    + +YG +       LR  R      +            
Sbjct: 404 L-GVD--------RPTAKVAVLAAMYGQTTGAAGQALRQMRETYGVAL----AYLDAADA 450

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEI----NSPKSSIRNINERAAINAPIQGSAADIT 900
                         + T  GRRI    +    +           R A NA +QG+AA++ 
Sbjct: 451 AGRSAALGAAPATPLRTFGGRRIPLRALPADADGDIGRAAAAYGRFARNAVVQGAAAELF 510

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK-ACLPKINLR 959
           +   ++V ++L    L   ++L +HDEL+ +VP +    A      +++  A        
Sbjct: 511 KAWAVTVRQALI--PLGGTIVLCLHDELLLQVPVQTAEAAVAATHRALDATAAHWAAGSA 568

Query: 960 VPLKVNIKVSNNWQEE 975
           V    +I V + W + 
Sbjct: 569 VRFVADIAVISRWSDA 584


>gi|326633014|ref|YP_004306603.1| flap endonuclease [Enterobacteria phage SPC35]
 gi|321272208|gb|ADW80100.1| flap endonuclease [Enterobacteria phage SPC35]
          Length = 291

 Score =  129 bits (324), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 108/264 (40%), Gaps = 24/264 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    +L +VDG++  +R        + K           F +     +Q+  K   A  
Sbjct: 16  MASRRNLMIVDGTNLGFR----FKHNNSKKP---------FASSYVSTIQSLAKSYSART 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPK-----IPEM--LLPQL-PLVRLATQAFG--IPAI 110
             V+ D     FR E  P+YK NR +       E   L  Q    ++ A +      P  
Sbjct: 63  TIVLGDKGKSAFRLEHLPEYKGNRDEKYSQRTEEEKALDEQFFEYLKDAFELCETTFPTF 122

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK 170
            I+G EADD+ A    +       V +ISTD D   L++     +      +  +  + +
Sbjct: 123 TIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHLRDMYE 182

Query: 171 KWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
              +   E+ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+       ++K 
Sbjct: 183 HHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKY 242

Query: 230 RENILEYAETARLSRKLVMLRTDV 253
            +N+    E    +  LV L T  
Sbjct: 243 IQNLNASKELLYRNLILVDLPTYC 266


>gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 675

 Score =  129 bits (324), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 112/697 (16%), Positives = 221/697 (31%), Gaps = 159/697 (22%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
             I T +        + +       ++           D ++    D T    +  ++L 
Sbjct: 6   IDIETRSPKPLPK--VGV---WAYAEEAKITLCAYAHNDETIKLW-DCTANPVMPSDLLK 59

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG---FEDIMLM------SYVLDSGRS 501
           +LK    ++  + + HN  +++++  +   I++          L       + + ++  +
Sbjct: 60  HLK----DDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMA 115

Query: 502 SHDIASIAQKWLSYTR-KEILKSRKSSIPIDKISDSQVQ------EHAIENSNVILQLWL 554
                ++ +            K      P D    + VQ      E+   +     +L+ 
Sbjct: 116 LKFPETLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYK 175

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            L P    E+ L + ++          ++   G  ID +L+K++   I+     L+E   
Sbjct: 176 RLTPLSENERHLWLLDQ----------EINDRGYAIDLNLVKKLQELIAFERERLDEEFK 225

Query: 615 DL-SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
           +L +G   +      L   LF           ++         L  ++  D P +   + 
Sbjct: 226 ELTAGVIGSARKTDLLNKYLFLYTGLDLPDMAES-------TVLTALSQPDIPQLSKAIL 278

Query: 674 WRQLSKIKST--YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN--------- 722
             +LS  +S     ++L   ++   +   T     ++ TGR +      QN         
Sbjct: 279 NNRLSSSQSAILKLNTLSGAVSPDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVD 338

Query: 723 ------------IPIKTDLGQ---KIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
                       +PIK  L      +R   I+ P KKLI AD + IE R+LA +A     
Sbjct: 339 EIERLIRGLDSGVPIKDPLRFASDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWK 398

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF---RLATQLRIP 824
              F N  DI++   ++ F V +  V+   R   K +  ++ Y        ++A+ L + 
Sbjct: 399 LNAFANGEDIYKTAYSKAFNVPLSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLN 458

Query: 825 RSEAADYIKR---------------YFHRF--------PGIHEYIEKTKN--FVRQNGYV 859
             + +  IK                +            P I    E  K     +  G V
Sbjct: 459 LQQFSKSIKNTATSEDWEQAQRRCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVV 518

Query: 860 ETIFGRRIHYDEI---------------------------------NSPKSSIRNINERA 886
           +        +D +                                 N         ++R+
Sbjct: 519 QLWKDCEEAFDCVIKDGRSISARRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRS 578

Query: 887 AINA------------------PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
            +N                    +Q  + DI    MI+  K+         ++L +HDE+
Sbjct: 579 YLNTATAQIMRERTYGGKLTENIVQAISRDILATGMINATKA------GYDIVLTVHDEI 632

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           V EVP +    +S  +   M +       L  PLK  
Sbjct: 633 VCEVP-DTPEFSSDDLCSLMTRNPTWAKGL--PLKAE 666


>gi|213582238|ref|ZP_03364064.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 124

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 1/123 (0%)

Query: 142 KDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
           K   QL+SP   + D  ++  +D   + K++G+ P ++     L G S   +PG+ GIG 
Sbjct: 1   KGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGP 60

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           K+A  LL ++ NLE I  +   + +K  R+ +  + E A L R +  L+TD+ I   L+ 
Sbjct: 61  KSATQLLVQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAFLCRDIARLQTDLHIDGNLQQ 119

Query: 262 LIL 264
           L L
Sbjct: 120 LRL 122


>gi|59897263|gb|AAX12058.1| exodeoxyribonuclease [Enterobacteria phage T5]
          Length = 276

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 108/264 (40%), Gaps = 24/264 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    +L +VDG++  +R        + K           F +     +Q+  K   A  
Sbjct: 1   MASRRNLMIVDGTNLGFR----FKHNNSKKP---------FASSYVSTIQSLAKSYSART 47

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPK-----IPEM--LLPQL-PLVRLATQAFG--IPAI 110
             V+ D     FR E  P+YK NR +       E   L  Q    ++ A +      P  
Sbjct: 48  TIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTF 107

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK 170
            I+G EADD+ A    +       V +ISTD D   L++     +      +  +  + +
Sbjct: 108 TIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHLRDMYE 167

Query: 171 KWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
              +   E+ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+       ++K 
Sbjct: 168 HHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKY 227

Query: 230 RENILEYAETARLSRKLVMLRTDV 253
            +N+    E    +  LV L T  
Sbjct: 228 IQNLNASEELLFRNLILVDLPTYC 251


>gi|330938828|gb|EGH42350.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 89

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 55/89 (61%), Gaps = 5/89 (5%)

Query: 6  HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDGSS++YRAF+A P L+    GLP  A+ G  NML  L    R++   S  AV+F
Sbjct: 5  PLVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVF 59

Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQ 94
          D    TFR+ +Y DYKANRP +P+ L  Q
Sbjct: 60 DAKGGTFRDALYNDYKANRPSMPDDLRVQ 88


>gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 704

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 107/685 (15%), Positives = 225/685 (32%), Gaps = 133/685 (19%)

Query: 381 VQKLETIGSASFKIITDTMDAFHS--------KPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +   +      F + T +  +  +        + I IAI     +        T      
Sbjct: 33  IGLFQQSPRFGFDLETFSRASTPAIAPETGEIRLIQIAIEQPAVQVIVIDLGWTAKERSR 92

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYGISMRGFEDIML 491
           +H   +S G         + L++   N     +GH++ +++   L +Y   +R   D  L
Sbjct: 93  IHQKLESLG-------FWTTLQERLANPQVEVVGHSLDFEQRWMLAKYNFPIRNLRDTKL 145

Query: 492 MS---------YVLDSGRSSHDIASIAQKWLSYTRKEILKS---RKSSIPIDKISDSQVQ 539
           MS         ++L      H + S+  + L  +  +  ++       +   ++S++Q  
Sbjct: 146 MSQVYWAGLDPWLLKQHGKPHSLESVCLR-LGISIDKSRQTSDWGWGDLGNGQLSNNQF- 203

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
            +A  ++++ +++  LL P+L    +   Y  ++       +QM   G+ +D+ +L  V+
Sbjct: 204 NYAANDASITIKVHDLLEPRLKEIGVWTSYL-IECAASPAFAQMSHYGMPVDEGVLADVT 262

Query: 600 AEISKNLLSLEENIYDLSGEKFN-----LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
                   SL E +    G  F+     L SPK+L  ++  + +              +A
Sbjct: 263 VAYEAAYQSLVEQL----GGTFSECLPHLYSPKKLIALINRRFRV----------TLKSA 308

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL---PNHINKRTQRVHTFYSLASTMTG 711
              +       P ++ I     + K   TY D L      +     R   +  +     G
Sbjct: 309 NVDDLSKLWGIPEVRLI----SVIKTTKTYVDYLHSIQAQVRNGFVRGK-YTQINRKGFG 363

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISP--------PTKKLISADYSQIELRILAHIAK 763
           R +  EPNLQN P  T    ++    + P             +  D S++  R+    + 
Sbjct: 364 RSSCSEPNLQNPPSPTTFPPELTPYNLPPIRSVFRTHSGCIGVWCDASKLHARVATQASL 423

Query: 764 ITPLYQVFEN-SLDIHRMVA----------AEIFGVNIEKVS-----------PQMRRHA 801
              L   F +   DI   +A          ++    NI + +            ++R  +
Sbjct: 424 DPELIARFNSPHGDIFCTIAEKLSQLEGMGSDWTEENIRRWTLDKHHANYAQASRLRAMS 483

Query: 802 KTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           K++++          L   +R      +    A + IK +   +  +  +          
Sbjct: 484 KSVHYGSQNLQGWRTLQKTIRTKSGIVLSDESAKNSIKAWRQTYKVLASFQHSIVEKANH 543

Query: 856 N------------------GYVETIFGRRIHYDEINS-------PKSSIRNINERAAINA 890
           +                  GYV  + GR +   +          PK   +        + 
Sbjct: 544 DLPSVLGMHLIQSRSKFGLGYVRCLTGRGVFLPKWRQNVEDGREPKIEGKWKKFNGLYST 603

Query: 891 PIQ-----GSA-------ADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEI 937
            +       +A       ADI +  +     + + + +    +    HDE      EE  
Sbjct: 604 LVSVKSPDANAAYWTMCEADIIKTFLAYCVAAFDAYPEWEAWVGNCCHDEADIFGKEEFG 663

Query: 938 TTASQIIVHSMEKACLPKINLRVPL 962
              +  +  +ME+A    I   +P+
Sbjct: 664 VEIASAVQMAMERAMRIVIK-DIPV 687


>gi|322829428|gb|EFZ32819.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 576

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 133/369 (36%), Gaps = 62/369 (16%)

Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLA 714
               +   + ILE R + K+  TY ++      + + ++     +H       T TGRLA
Sbjct: 199 KTHGDKTAETILELRTMEKLIGTYYENTDDGTGMVSLVHSVDSCIHHELIHNKTNTGRLA 258

Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFE 772
           S  PN QNIP   +    +R  F+S   +K   I ADYSQ+E+  LA +A    + +   
Sbjct: 259 SANPNCQNIPK--EDKSPLREMFVSRYGEKGMCIEADYSQLEVVALAVLADDFQMLEDLR 316

Query: 773 NSLDIHRMVAAEI--------------FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
           +++D H    A +                   E V  ++R+ AK  +F   YG     ++
Sbjct: 317 SNVDFHCKRVAMMRPDLQYTEVLLRAKKNKEPEFV--KLRQQAKIFSFQRQYGAGVKMIS 374

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEY----------IEKTKNFVRQN------------ 856
               + + +  + I++    + G+  +           + +     +N            
Sbjct: 375 QSTGLTQDQVRNLIEKERETYRGVDAFNSMVALSANNFDASIQDGSRNVRGHQFFKGMFP 434

Query: 857 -----GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS- 910
                 YV T            S  +   N +     N P+QG A +I +  +  + +  
Sbjct: 435 VITGSRYVFTESDVPEGIMREKSLSAKSTNFSPTHLKNYPVQGFAGEIVQIMLGMLWRHF 494

Query: 911 LEDHKLATKMLL--QIHDELVFEVPEEEITTASQIIVHSMEKA------CLPKINLRVPL 962
           L ++      +L   +HD +  +   +     +  +   M           P++N+ V  
Sbjct: 495 LRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVADEVETIMSNVREVLNHLYPEMNITVDF 554

Query: 963 KVNIKVSNN 971
             ++    N
Sbjct: 555 PCDVVAGEN 563


>gi|29366719|ref|NP_813764.1| putative DNA polymerase [Pseudomonas phage gh-1]
 gi|29243578|gb|AAO73157.1|AF493143_18 putative DNA polymerase [Pseudomonas phage gh-1]
          Length = 709

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 133/401 (33%), Gaps = 58/401 (14%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN +S   +  +L  K  +     T  G  K   + LE +   D      I   ++   +
Sbjct: 322 FNPTSRPHIIKML-KKAGWEPSEFTDNGAPKVDDEVLEHVRVDDPEKQAAIELIQKRIGM 380

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT-DLGQKIRRAFIS 739
            +   ++    + +    +H   +     TGR     PN+  +P  +   G   R  F +
Sbjct: 381 LAEGDNAWIKLVGEDGA-MHGSINPNGAGTGRATHAYPNMGQVPSASATYGPHCRALFGA 439

Query: 740 -----PPTK---KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-- 789
                         +  D S +ELR L H          F+       ++  +I  VN  
Sbjct: 440 THAKKRRGWEKVVQVGTDASGLELRCLGHY------GAPFDEGRYADTVLNGDIHWVNGK 493

Query: 790 ------------IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
                         +   ++R  AKT  ++ +YG     + + +   + E     K +  
Sbjct: 494 AAGIIKFDERDKHNEEHERVRGIAKTFIYAFLYGAGDELVGSFVGGGKKEGKALKKDFME 553

Query: 838 RFPGIHEYI---------EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
             P I             E+  N   +   ++    +R     ++  K  +R+    +A+
Sbjct: 554 NTPAISGLQGAIADQLITEQKWNQATRRFDIK---WKRRWLRGLDGRKIHVRS--PHSAL 608

Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKM------------LLQIHDELVFEVPEE 935
           N  +Q + A I ++ ++ V + L E+H L                +  +HDEL       
Sbjct: 609 NFLLQSAGAIICKKWVVEVERILMEEHGLYHGWYKDDGTPGDFCYMAWVHDELQIAARTP 668

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           EI      +     +        R  L  + K+   W+E +
Sbjct: 669 EIAEIVAKVAQQAIREVGESFQFRCQLDTDYKIGATWRECH 709



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 41/224 (18%)

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN-IKYDKLVL---------HRYGISMR 484
           T Q +        + +  L+        L + HN IKYD   L          R  I  +
Sbjct: 28  TGQYTRFNEATFGDYIKALEAEAAKPDGLIVFHNGIKYDIPALDKLKRQYFGKRLNIPRK 87

Query: 485 GFEDIMLMSYVLDSG------------------RSSHDIASIAQKWLSYTRKEILKSRKS 526
              D +++  ++ S                     SH + +   + L   + E       
Sbjct: 88  KVLDTLVLVRLIHSNIRDRDAGLMRSGILPGKMFGSHSLEAWGYR-LGEMKGEYKHDFMR 146

Query: 527 SIPID----------KISDSQVQEHAIENSNVILQLWLLLRP--KLIVEKLLHVYERLDK 574
            +  D           + +  ++++  ++  V  +L   L       V+       R++ 
Sbjct: 147 QLEADGGVYTPGLEWAVCNQAMEDYCEQDVRVTSKLLRKLMEDSHYFVDGQAIECVRMEH 206

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
                ++QME  G   D +  +++ AE++     L   +    G
Sbjct: 207 AAAWTLAQMERNGFPFDLEGAERLYAELAGIRQDLLTKLIKTFG 250


>gi|46401866|ref|YP_006958.1| flap endonuclease [Enterobacteria phage T5]
 gi|119684|sp|P06229|EXO5_BPT5 RecName: Full=Exodeoxyribonuclease; AltName: Full=5'-exonuclease;
           AltName: Full=T5FEN
 gi|46015845|pdb|1UT5|A Chain A, Divalent Metal Ions (Manganese) Bound To T5 5'-Exonuclease
 gi|46015846|pdb|1UT5|B Chain B, Divalent Metal Ions (Manganese) Bound To T5 5'-Exonuclease
 gi|46015847|pdb|1UT8|A Chain A, Divalent Metal Ions (Zinc) Bound To T5 5'-Exonuclease
 gi|46015848|pdb|1UT8|B Chain B, Divalent Metal Ions (Zinc) Bound To T5 5'-Exonuclease
 gi|45775044|gb|AAS77176.1| flap endonuclease [Enterobacteria phage T5]
 gi|51512068|gb|AAU05267.1| 5'-3' exonuclease [Enterobacteria phage T5]
 gi|224882|prf||1203256A exonuclease,5'
          Length = 291

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 108/264 (40%), Gaps = 24/264 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    +L +VDG++  +R        + K           F +     +Q+  K   A  
Sbjct: 16  MASRRNLMIVDGTNLGFR----FKHNNSKKP---------FASSYVSTIQSLAKSYSART 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPK-----IPEM--LLPQL-PLVRLATQAFG--IPAI 110
             V+ D     FR E  P+YK NR +       E   L  Q    ++ A +      P  
Sbjct: 63  TIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTF 122

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK 170
            I+G EADD+ A    +       V +ISTD D   L++     +      +  +  + +
Sbjct: 123 TIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHLRDMYE 182

Query: 171 KWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
              +   E+ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+       ++K 
Sbjct: 183 HHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKY 242

Query: 230 RENILEYAETARLSRKLVMLRTDV 253
            +N+    E    +  LV L T  
Sbjct: 243 IQNLNASEELLFRNLILVDLPTYC 266


>gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus]
          Length = 169

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 29/189 (15%)

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
           +PNLQNIP       ++R  F +   K L+ +D+SQIELRI +       + + F+   D
Sbjct: 1   DPNLQNIPR------ELRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRD 54

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL-----ATQLRIPRSEAADY 831
           +HR  A+ + G   E+VS + R+ AK +NF +IYGIS   L     +  + +   EA   
Sbjct: 55  LHRYTASILLGKREEEVSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLSVDEAQKI 114

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQ----NGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
             ++F  F     + EK K  +++     GY  T+ GR+                    A
Sbjct: 115 RDKFFEYFVSFKNWHEKVKRELKEFKESRGY--TLLGRKYV------------AHTFPDA 160

Query: 888 INAPIQGSA 896
           +N PIQG+ 
Sbjct: 161 VNYPIQGTG 169


>gi|47934612|gb|AAT39744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 254

 Score =  128 bits (321), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 27/226 (11%)

Query: 745 LISADYSQIELRILAHIAKITPLYQVF-----ENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           L+  D S +ELR+LAH  K     +       ++  D+H         VN        R 
Sbjct: 50  LVGCDASGLELRMLAHYMKDDDYVRTVCEGSSKDGTDVHT--------VNQRAAGLSTRD 101

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           +AKT  ++ +YG    ++ + +     + +    ++  + P + + IE+      + G+V
Sbjct: 102 NAKTFIYAFLYGAGDAKIGSIVGGSAKDGSKLKAKFLDQTPALRKLIERVSKQAAK-GWV 160

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
             + GRRI               +E AA+N+ +QG+ A + ++A++     ++ +K   K
Sbjct: 161 PGLDGRRIWVR------------SEHAALNSLLQGAGAIVMKKALVIFSDKIKTNKWNVK 208

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           ++  +HDE  FE  ++    A +    S+ +A       R PL   
Sbjct: 209 LVANVHDEFQFECSKDIAEEAGKAAKMSIVEAG-EYFKFRCPLDGE 253


>gi|110741816|dbj|BAE98851.1| hypothetical protein [Arabidopsis thaliana]
          Length = 131

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 5/130 (3%)

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
            FR+ +YP YK+NRP  P+ ++  L  ++ + +A  I  IE+ G EADD+I T    +  
Sbjct: 2   NFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAMRSIS 61

Query: 131 EGFAVTIISTDKDLMQL-VSPTTCLYDTVKEEKI---DIEHVIKKWG-IPPEKMVCLQAL 185
            GF V ++S DKD  Q+       L  T +  ++    +E   KK+G + P + V + AL
Sbjct: 62  AGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFVDIIAL 121

Query: 186 TGDSIDNIPG 195
            GD  DNIPG
Sbjct: 122 AGDKSDNIPG 131


>gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 971

 Score =  127 bits (319), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 93/494 (18%), Positives = 175/494 (35%), Gaps = 98/494 (19%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           + + S  + T              +    +       +    +D       D     T+ 
Sbjct: 1   MKTLSLDLET----YSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----G-------------------ISM 483
           +EIL  L     ++   K   N  ++++ L RY    G                   +S 
Sbjct: 57  EEILDALT----DDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSP 112

Query: 484 RGFEDIMLMS-YV--------------LDSGRSSHDIASIAQKWLSYTRKEIL--KSRKS 526
            G++  M+ S Y+              LD+ +       I  ++     KE      R  
Sbjct: 113 AGWKCSMVWSAYMGLPLSLEGVGAVLNLDNQKMKEGRELI--RYFCVPCKETRTNGGRTR 170

Query: 527 SIPIDKISD-SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           ++P   +   +Q + +   +  V + +   L+   + E++   Y         +  ++  
Sbjct: 171 NLPQHALDKWNQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYH--------LDQEIND 222

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
            GI ID +L KQ  A  +K+  SL   + + +G + N +S  Q+   L        G KT
Sbjct: 223 RGIAIDLELAKQAVAMDAKSRESLMAALKEKTGLE-NPNSVLQMLGWLEDH-----GLKT 276

Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705
            +   K   Q  E +     P+   +   ++L+K       ++ N + +  +    F   
Sbjct: 277 DSLGKK---QVKELLKTAQEPLRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFY 333

Query: 706 ASTMTGRLASLEPNLQNIP----------------------------IKTDLGQKIRRAF 737
            +  TGR+A     LQN+P                            I   L Q IR AF
Sbjct: 334 GANRTGRVAGRHIQLQNLPQNHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAF 393

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSP 795
           +     K + +D+S IE R+++ +A        F    DI+   A+++FGV + K  V+ 
Sbjct: 394 VPRAGMKFVVSDFSAIEARVISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNG 453

Query: 796 QMRRHAKTINFSII 809
           ++R+  K    + I
Sbjct: 454 ELRQKGKIAELACI 467



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 71/217 (32%), Gaps = 57/217 (26%)

Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAK-TINFSIIYGISPFRL----ATQLRIPRSEAADY 831
            H+  A      +I    P  R      +  +  YG S   L    A  + IP  E    
Sbjct: 746 YHKRTARLY---DIRNAGPYHRFTVSGCLVHNCGYGGSVGALKAMGALDMGIPEEELGSL 802

Query: 832 IKRYFHRFPGIHEYIEKT------------------KNFVRQNG--YVETIFGRRI---- 867
           ++ +    P I ++  +                     FV Q+G  ++E   GR++    
Sbjct: 803 VQSWRSANPHIVDFWWQVDGAVKTAIKQRIPVWVNNIRFVCQSGMLFIELPSGRQLSYVK 862

Query: 868 -------------HYDEINSPKSSIR-NINERAAINAPIQGSAADITRRAMISVHKSLED 913
                         Y+ I + K   R        +   +QG+A DI   AM ++      
Sbjct: 863 PRIGENKFGGESVTYEGIGATKKWERLESYGPKFVENIVQGTARDILCYAMQTLR----- 917

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950
                 ++  +HDEL+ E  +E    A   I   M +
Sbjct: 918 ---CCAIVGHVHDELIIECSKEVSVDA---ICEQMSR 948


>gi|312062862|gb|ADQ12724.1| DNA polymerase A domain-like protein [Acinetobacter phage phiAB1]
          Length = 494

 Score =  127 bits (319), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 141/412 (34%), Gaps = 69/412 (16%)

Query: 626 PKQLGDILFTKLKFPSGAKTKTG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           PK + +          G +  T       +T  D   +        + + + ++L K  +
Sbjct: 78  PKHVSEQFTGDRAEFKGKRVHTACGTPVYSTGDDALDLVAKFTEAAQPLRDMKKLIKDTT 137

Query: 683 TYA---------DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           TY            +  ++       H   +  +T+TGRL+  +PNLQN+P       K+
Sbjct: 138 TYYLVEDDKGKQSGMLQYVEPNGIIHHQLNN-CATVTGRLSGSKPNLQNVPRDGT--SKV 194

Query: 734 RRAFISPPT--KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           +  F+S      +L+  DYS +E+  LA I+    L Q   +  D+H    A   G + E
Sbjct: 195 KEMFVSRFGSDGRLVECDYSALEVVALASISGDKNLLQQLIDGTDMHCYRLAGALGEDYE 254

Query: 792 KV--------------SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
            V                Q+R   K   F+  YG S   ++        EA  + +    
Sbjct: 255 TVFEKCHDKSHPEHKKYKQLRTDIKPRAFANQYGASAMGISFSTGCSLEEAEQFKETERK 314

Query: 838 RFPGIHEYIEKTKN-FVRQNG--------YVETIFG--RRIHYDEINSPKSSIRNINER- 885
            FP    + E+     V QNG         V  I+   RR  +  ++    S R   +  
Sbjct: 315 LFPESSTFSERIVRPQVEQNGLSMPMESELVNGIWKHFRRGFFKALSGTCYSFRQFPKYV 374

Query: 886 ------------AAINAPIQGSAADITRRAMISVHKSLEDHKL---ATKMLLQIHDELVF 930
                          N PIQG A+ I + A   V + L  +         +  +HD +  
Sbjct: 375 KGVGEKYDYKDTQIANYPIQGEASFIVQCACGRVIRWLIGNDFFGGKALPINTVHDCIQL 434

Query: 931 EVPEEEITT-ASQIIVHSMEK---------ACLPKINLRV-PLKVNIKVSNN 971
           +  + E        +   M+            L +    + P    +++ ++
Sbjct: 435 DCADRETAIMVGTKVKEIMDSTPKWMTTRIPALKEWRYDITPFPAELEIGSS 486


>gi|189426956|ref|YP_001950055.1| 5'-3' exonuclease [Ralstonia phage RSL1]
 gi|189233268|dbj|BAG41625.1| 5'-3' exonuclease [Ralstonia phage RSL1]
          Length = 250

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 36/240 (15%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            +F+VDG+ +++RA +    +    +GLP         M+ K       +  A    V F
Sbjct: 2   RIFVVDGNWYLWRAAHVYKSILPMAEGLP----YDVLAMVMK----DALQLKAHATLVAF 53

Query: 66  DYPAVTFRNEIYPDYKANRP--------------KIPEMLLPQL----PLVRLATQAFGI 107
           D  A  FRN++YP+YKANR                +   L  Q+    P +       G+
Sbjct: 54  D-GARLFRNKLYPEYKANRREGRLNDGQHDAENGPVRGDLRDQVYGALPGIYQLFDEVGL 112

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV--------K 159
              +   +EADD++ +  +    E   V   + DKD  Q + P+  LYD+         K
Sbjct: 113 AYYQPPKYEADDVLCSVAHAFGNE-HTVICGTKDKDAYQYLRPSVRLYDSSAKGKDGKSK 171

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
              I  E  +KK+G+ P +M+  Q L GD  DNI  +P +       LL EYG++   + 
Sbjct: 172 PRFITEEDCVKKFGVLPRQMIAYQTLLGDPGDNIMPLPNMKPARVKKLLNEYGSVTKWMA 231


>gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
          Length = 646

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 158/463 (34%), Gaps = 98/463 (21%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++  +G++ID+ L+               E    L+G + N +S  QL   L T      
Sbjct: 193 KINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALTGLE-NPNSQVQLKGWLET------ 245

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVH 700
             K    +  +  +  E +   ++  +K +L+ RQ LSK      +++   + K  +   
Sbjct: 246 --KGVKAESLSKEKVRELLKEVEDEKVKRVLKLRQELSKTSVKKYEAIKRAVCKDERVRG 303

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDL----------------------------GQK 732
                 +  TGR +      QN+P  T                               Q 
Sbjct: 304 LLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYSVPEVLSQL 363

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IR AFI     + I +D+S IE R++A +A    +   F+ S  ++ M A+ +FGV IEK
Sbjct: 364 IRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAASRMFGVPIEK 423

Query: 793 VSP-----QMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADYIKRYFHRFPGIH 843
           +        +R+  K    +  Y  S   L    A ++ +   E +  +  +      I 
Sbjct: 424 IVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVKMGLKEEELSGIVAAWRKSNSNIV 483

Query: 844 EYIEKTKNFV----RQNGYVETIFGRR---------IHYDEINSPKSSIRNINERAAIN- 889
           +   K ++      R+   V+  +G           I      S       I +    N 
Sbjct: 484 KLWRKIEDAAIKAVREKKVVKMQYGLEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNK 543

Query: 890 ---------------------------APIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
                                        +Q  A D    AM+ + ++        K++ 
Sbjct: 544 LKLTYEGIEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRA------GYKIVF 597

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
            +HDE++ +VP    +   + +   M K       L  PLK +
Sbjct: 598 HVHDEVILDVPNGFGSL--KEVNEIMGKPIEWAKGL--PLKAD 636


>gi|219815953|gb|ACL37076.1| truncated DNA polymerase I [uncultured bacterium]
 gi|219815954|gb|ACL37077.1| truncated DNA polymerase I [uncultured bacterium]
          Length = 282

 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 108/272 (39%), Gaps = 37/272 (13%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
              + L +VD  +  +R  +     SR  D         F +     +Q+ R+       
Sbjct: 11  SSSDALMVVDSLNLAFRYKH-----SRAVD---------FADDYMDTVQSLRRSYHCDKL 56

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP---------------LVRLATQAFG 106
            +  D  + ++R  + P YK NR    +    Q                 ++    +   
Sbjct: 57  VIAGDMGSSSYRKALSPIYKQNRK---DKFAEQTEQEAAEFEAFFAEVQGILVRYEEEAT 113

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
            P +   G EADDI A      ++     + +IS+D+D   LV+     +  V  +++ +
Sbjct: 114 YPLLRFPGVEADDIAAYIVSKRKQFNLSQIWLISSDRDWDLLVAQGVSRFSYVTRKEVTL 173

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           ++    +    E+ + ++ L GDS DN+ G+PGIG K AA L+ +YG+  +I+       
Sbjct: 174 DNWSTHYDFTQEEYISIKCLMGDSGDNVIGVPGIGPKKAAQLVLDYGSAYDIIDALPISS 233

Query: 226 QKKRRENILE-YAETARLSRK---LVMLRTDV 253
           + K   N+     +   L+ +   LV    D 
Sbjct: 234 KYKYIANLNAFGGDNLLLNYQLMDLVTYCADA 265


>gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
 gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
          Length = 653

 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 110/665 (16%), Positives = 228/665 (34%), Gaps = 122/665 (18%)

Query: 389 SASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           + +  I T  ++D   +           Q  D    +     D       D      L +
Sbjct: 3   TLNIDIETYSSIDIKKA-----GAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQ 57

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIA 506
           EI+  L     +   +K  +N  ++   L+R+  S +  +    +  + L  G ++  + 
Sbjct: 58  EIVEAL----ADPAVVKHAYNAAFEWYCLNRFFYSPIEQWRCTQV--HGLYCGYTA-GLG 110

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ---LWLLLRP----- 558
           ++ +       K  L +  S I    I     + + +    +       W L +      
Sbjct: 111 AVGEALGIPQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGD 170

Query: 559 ---KLIVEKLLHVYERLDKPMI--DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
              ++ +++ L  +   D+      +  ++   G+  D  +++   A   +    L    
Sbjct: 171 VVAEMEIQRRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEA 230

Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
             L+G   N  S +QL   L  +    +G + +  Q  T ++ +++++ G     + +LE
Sbjct: 231 ISLTGLD-NPKSVQQLSKWLAEE----TGEEVENLQKGTVSKLIDKLDEGK---ARRVLE 282

Query: 674 WRQ-LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-------- 724
            RQ LSK  +    ++        +         +  TGR A     +QN+P        
Sbjct: 283 IRQELSKTSTKKYAAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLE 342

Query: 725 --------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764
                               +   L Q IR AF+ P  K+L  AD+S IE R++A +A  
Sbjct: 343 YARQLVVERKVEMLKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGE 402

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKV--SPQMRRHAKTINFSIIYGISPFRL----A 818
                VF     I+   A+++FGV IE++     +R+  K    ++ Y      L    A
Sbjct: 403 QWRLDVFATHGKIYEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMGA 462

Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEY---IEKTKNFVRQNGY----------------- 858
               +  +E  + + R+ +    I +    +E     V + G                  
Sbjct: 463 LDQGLTEAELPEIVTRWRNANRRIVDLWYSMEAAAIEVMETGQPVGVRGLIFARESHHAT 522

Query: 859 ------VETIFGRRIHYD-------------------EINSPKSSIRNINERAAINAPIQ 893
                 +    GR++ Y                    +  S K ++ N      +   +Q
Sbjct: 523 KQDFFTITLPSGRKLFYAKPFLRENDFGKPALHYWGMDQTSKKWTVLNTYGGKLVENCVQ 582

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV-PEEEITTASQIIVHSMEKAC 952
             A D     ++ +        +   ++L +HDE+  E+   +E+    +I+   ++ A 
Sbjct: 583 AIARDCLAVTLMRLD------HVGYPIVLHVHDEVGAELSSADELDRMLEIMAQPIQWAP 636

Query: 953 LPKIN 957
              + 
Sbjct: 637 GLPLK 641


>gi|225420465|ref|ZP_03762768.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
 gi|225040896|gb|EEG51142.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
          Length = 110

 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 4/110 (3%)

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           +GRR    E+ S     R   ER A+N+PIQG+AAD+ + AMI V + L+   + ++++L
Sbjct: 1   YGRRRPIPELKSANFMQRQFGERVAMNSPIQGTAADVMKIAMIRVDRELKKRNMKSRIVL 60

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           QIHDEL+ E    E+     ++   M+ A     +L+V L+V+ KV ++W
Sbjct: 61  QIHDELLVETERSEVEAVKALLEEQMKGAA----DLKVALEVDAKVGDSW 106


>gi|148727216|ref|YP_001285708.1| p39 [Xanthomonas phage Xop411]
 gi|116583516|gb|ABK00186.1| p39 [Xanthomonas phage Xop411]
          Length = 793

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 145/392 (36%), Gaps = 66/392 (16%)

Query: 648 GQWKTTAQDLEQINCGDN--PIIKNILEWRQLSKIKSTYADS----------LPNHINKR 695
           GQ+KT  +  + +   ++    ++      +++K   TY  +          + + + K 
Sbjct: 379 GQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGKD 438

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIE 754
               H    + +T+TGRL+S  PNLQN+P       +++  F+S  P   ++ +D++ +E
Sbjct: 439 GIVHHQLQ-MVNTVTGRLSSALPNLQNLPKGDK--SEVKTLFVSRFPGGFIVQSDFTALE 495

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--------------QMRRH 800
           + +  +++  + L       LD+H    A+  GV+ + V                  R  
Sbjct: 496 IYVQGNLSGDSALIADLRAGLDMHCKRLAQKEGVSYDYVFERAKDKKHIEYIVWNSKRSK 555

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN---- 856
           AK  +F   YG     +A    +   E  + I+     +PGI EY ++T   + +N    
Sbjct: 556 AKGFSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNLVPS 615

Query: 857 ------------------GYVETIFGRRIHYDEINSPKSSIRN------INERAAINAPI 892
                              Y  T  G+R    +  +PK            +     N P+
Sbjct: 616 KMYITSSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSSTTTKNYPV 675

Query: 893 QGSAADITRRAM-ISVHKSLEDHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSME 949
           QG+  +  + AM + V +         +  ++  +HD    +   E    +  ++   ME
Sbjct: 676 QGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKESMALLHACME 735

Query: 950 KA-----CLPKINLRVPLKVNIKVSNNWQEEN 976
           +A           L + +     +  +  +E 
Sbjct: 736 EASRYIESQFAWKLHIDVPSETSIGPSMADEG 767



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 30/238 (12%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR--------YGISMRG--FEDIMLMSYVLDSGR 500
            + +    N   L +G NIK+D L   R            + G    D  L  Y+L    
Sbjct: 69  DWFRVILNNCRVL-VGFNIKFDLLYALRDKANHTAWMQWVVEGGKVWDCQLAEYLLQGMA 127

Query: 501 SSH---DIASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAI----ENSNVILQL 552
                  +  +A  +    +   +KS  ++ I   +I    + ++ +    +N   I   
Sbjct: 128 QEWQIASMDDVAPLYGGSCKDHAVKSCWENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNT 187

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVV--SQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
             + + +L + K       +      ++   + E+ G+ +D    +++  ++   L+ L 
Sbjct: 188 ANIFKGQLKLAKERGQIASITLNNAALLYTVEAELNGMFVDVAKGEEIRQQLLAKLMHLS 247

Query: 611 ENIYDLSGE----KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           E +     E    +FN +SPKQ   +LF         K K+ +              D
Sbjct: 248 EQVNKGLPEDLPFEFNWASPKQRSALLFGG-----SVKYKSREQSRDEAGELLFAKQD 300


>gi|32128451|ref|NP_858986.1| DNA polymerase lacking N-terminal exonuclease domain [Xanthomonas
           phage Xp10]
 gi|31788514|gb|AAP58706.1| 38L [Xanthomonas phage Xp10]
          Length = 794

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 143/392 (36%), Gaps = 66/392 (16%)

Query: 648 GQWKTTAQDLEQINCGDN--PIIKNILEWRQLSKIKSTYADS----------LPNHINKR 695
           GQ+KT  +  + +   ++    ++      +++K   TY  +          + + +   
Sbjct: 379 GQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGSD 438

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIE 754
               H    + +T+TGRL+S  PNLQN+P       +++  F+S  P   ++ +D++ +E
Sbjct: 439 GIVHHQLQ-MVNTVTGRLSSALPNLQNLPKGDK--SEVKTLFVSRFPGGFIVQSDFTALE 495

Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--------------QMRRH 800
           + +  +++    L       LD+H    A+  GV+ + V                  R  
Sbjct: 496 IYVQGNLSGDIALIADLRAGLDMHCKRLAQKEGVSYDYVFERAKDKKHIEYIVWNSKRSK 555

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN---- 856
           AK  +F   YG     +A    +   E  + I+     +PGI EY ++T   + +N    
Sbjct: 556 AKGFSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNLIPS 615

Query: 857 ------------------GYVETIFGRRIHYDEINSPKSSIRN------INERAAINAPI 892
                              Y  T  G+R    +  +PK            +     N P+
Sbjct: 616 KMYIASSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSSTTTKNYPV 675

Query: 893 QGSAADITRRAM-ISVHKSLEDHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSME 949
           QG+  +  + AM + V +         +  ++  +HD    +   E    +  ++   ME
Sbjct: 676 QGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKESMALLHACME 735

Query: 950 KA-----CLPKINLRVPLKVNIKVSNNWQEEN 976
           +A           L + +     +  N  +E 
Sbjct: 736 EASRYIESQFAWKLHIDVPSETSIGPNMADEG 767



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 30/238 (12%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISMR------GFEDIMLMSYVLDSGR 500
            + +    N   L +G NIK+D L        +   M+         D  L  Y+L    
Sbjct: 69  DWFRVILNNCRVL-VGFNIKFDLLYALRDKANHAAWMQWVTDGGKVWDCQLAEYLLQGMA 127

Query: 501 SSH---DIASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAI----ENSNVILQL 552
                  +  +A  +    +   +KS  ++ I   +I    + ++ +    +N   I   
Sbjct: 128 QEWQIASMDDVAPLYGGSCKDHAVKSCWENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNT 187

Query: 553 WLLLRPKLI--VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
             + + +L    E+       L+   +    + E+ G+ +D    +++  ++   L+ L 
Sbjct: 188 ANIFKGQLKLVKERGQIASITLNNAALLYTVEAELNGMFVDVAKGEEIRQQLLAKLMHLS 247

Query: 611 ENIYDLSGE----KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           E +     E    +FN +SPKQ   +LF         K K+ +              D
Sbjct: 248 EQVNKGLPEDLPFEFNWASPKQRSALLFGG-----SVKYKSREQSRDEAGELLFAKQD 300


>gi|56752739|gb|AAW24581.1| SJCHGC05886 protein [Schistosoma japonicum]
          Length = 191

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 24/186 (12%)

Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           +    LA+QL I    A   I  + + + GI ++I  T +   + G ++T+ G       
Sbjct: 1   MGCHTLASQLNISEKSAQKLIDGFLNIYTGIQKFITTTVSTAHREGQIKTLNGHIRLLPA 60

Query: 872 INSPK---------------SSIRNI-----NERAAINAPIQGSAADITRRAMISVHKSL 911
           +NS                    RN       ER A+N+ IQGSAA+I + AM++V +++
Sbjct: 61  LNSKSIFSCVSANEFSCNWSKKQRNHFAVTKAERQAVNSIIQGSAAEIAKLAMLAVDEAI 120

Query: 912 EDHKLA--TKMLLQIHDELVFEV-PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
               +    +++L  HDEL++E+ PE  +     +I  +M        N+ VPL V +K+
Sbjct: 121 SSANIPGYARLVLHEHDELIYEIFPESSVKQFGVLIRQAMSS-TGKYCNINVPLPVKLKI 179

Query: 969 SNNWQE 974
             NW +
Sbjct: 180 GPNWSD 185


>gi|27476023|ref|NP_775225.1| DNA polymerase1 [Pseudomonas phage PaP3]
 gi|27414453|gb|AAL85539.1| DNA polymerase1 [Pseudomonas phage PaP3]
          Length = 545

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 98/243 (40%), Gaps = 16/243 (6%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
            R ++       +  D + +ELR+LA         +   +  D+H          N    
Sbjct: 319 YRVYVPENQLIFVGYDGAGLELRMLASYIGDPDYTREVVDG-DVHTA--------NQIAA 369

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
               R  AKT  ++ IYG    ++   +   R++ A   +++    P + + IE+ K   
Sbjct: 370 GLPTRDDAKTFIYAFIYGAGDAKIGQIIGGTRADGARLREQFLKANPELAKLIERVKQEA 429

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
            + GY+  + GR++      S +  +       A+N  +Q + A + + AM+ + + +  
Sbjct: 430 -ERGYLVGLDGRKLTMRRSESGEVMV-----HKALNTLLQAAGAIVMKWAMVILDEKVRR 483

Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             L    +L IHDE  +E   E++ T    +   +++A    +    PL  +     +W 
Sbjct: 484 AGLKAWKVLDIHDEGQWECHPEDLATLRGFMETCVKEAG-EILGCNCPLASDSIAGRSWY 542

Query: 974 EEN 976
           + +
Sbjct: 543 DTH 545


>gi|14719815|pdb|1XO1|A Chain A, T5 5'-Exonuclease Mutant K83a
 gi|14719816|pdb|1XO1|B Chain B, T5 5'-Exonuclease Mutant K83a
          Length = 291

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 107/264 (40%), Gaps = 24/264 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M    +L +VDG++  +R        + K           F +     +Q+  K   A  
Sbjct: 16  MASRRNLMIVDGTNLGFR----FKHNNSKKP---------FASSYVSTIQSLAKSYSART 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPK-----IPEM--LLPQL-PLVRLATQAFG--IPAI 110
             V+ D     FR E  P+Y  NR +       E   L  Q    ++ A +      P  
Sbjct: 63  TIVLGDKGKSVFRLEHLPEYAGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTF 122

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK 170
            I+G EADD+ A    +       V +ISTD D   L++     +      +  +  + +
Sbjct: 123 TIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHLRDMYE 182

Query: 171 KWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
              +   E+ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+       ++K 
Sbjct: 183 HHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKY 242

Query: 230 RENILEYAETARLSRKLVMLRTDV 253
            +N+    E    +  LV L T  
Sbjct: 243 IQNLNASEELLFRNLILVDLPTYC 266


>gi|33322851|gb|AAQ07161.1|AF496471_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 95

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 66/98 (67%), Gaps = 4/98 (4%)

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
           ++R+  ER AIN+PIQGSAADI + AMI+V K L++  L TKM++Q+HDEL+F+VP +E+
Sbjct: 1   NVRSFAERTAINSPIQGSAADIMKIAMINVQKKLDELGLKTKMVVQVHDELIFDVPADEL 60

Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
            T  +I+   M+ A    + L VPL  +    ++W E 
Sbjct: 61  ETIXKIVPSVMQAA----VKLDVPLVADAGWGHDWYEA 94


>gi|84662633|ref|YP_453598.1| putative DNA directed DNA polymerase [Xanthomonas phage OP1]
 gi|84570682|dbj|BAE72745.1| putative DNA directed DNA polymerase [Xanthomonas oryzae phage OP1]
          Length = 793

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 70/401 (17%), Positives = 147/401 (36%), Gaps = 66/401 (16%)

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDN--PIIKNILEWRQLSKIKSTYADS--------- 687
            P    +  GQ+KT  +  + +   ++    ++      +++K   TY  +         
Sbjct: 370 LPEWQGSAPGQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETK 429

Query: 688 -LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKL 745
            + + +       H    + +T+TGRL+S  PNLQN+P       ++++ F+S  P   +
Sbjct: 430 GMLSLVGSDGIVHHQLQ-MVNTVTGRLSSALPNLQNLPKGDK--SEVKKLFVSRFPGGFI 486

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP---------- 795
           + +D++ +E+ +  +++  + L       LD+H    A+  GV+ + V            
Sbjct: 487 VQSDFTALEIYVQGNLSGDSALIADLRAGLDMHCKRLAQKEGVSYDYVFERAKDKKHIDY 546

Query: 796 ----QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
                 R  AK  +F   YG     +A    +   E  + I+     +PG+ EY ++T  
Sbjct: 547 IVWNSKRSKAKGFSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGVPEYNKRTMK 606

Query: 852 FVRQN----------------------GYVETIFGRRIHYDEINSPKSSIRN------IN 883
            + +N                       Y  T  G+R    +  +PK            +
Sbjct: 607 ELERNLIPSKMYIASSYEVGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFS 666

Query: 884 ERAAINAPIQGSAADITRRAM-ISVHKSLEDHKLATK--MLLQIHDELVFEVPEEEITTA 940
                N P+QG+  +  + AM + V +         +  ++  +HD    +   E    +
Sbjct: 667 STTTKNYPVQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKES 726

Query: 941 SQIIVHSMEKAC-----LPKINLRVPLKVNIKVSNNWQEEN 976
             ++   ME+A           L + +     +  +  +E 
Sbjct: 727 MALLHACMEEASRYMEHQFSWKLHIDVPSETSIGTSMADEG 767



 Score = 51.2 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 30/238 (12%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR----YGISMR------GFEDIMLMSYVLDSGR 500
            + +    N   L  G NIK+D L   R    +   M+         D  L  Y+L    
Sbjct: 69  DWFRVILNNCRVL-AGFNIKFDLLYALRDKDNHTAWMQWVTDGGKVWDCQLAEYLLQGMA 127

Query: 501 SSH---DIASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAI----ENSNVILQL 552
                  +  +A  +    +   +KS  ++ I   +I    + ++ +    +N   I   
Sbjct: 128 QEWQIASMDDVAPLYGGSCKDHAVKSCWENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNT 187

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVV--SQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
             + + +L + K       +      ++   + E+ G+ +D     ++  ++   L+ + 
Sbjct: 188 ANIFKGQLKLAKDRGQIASITLNNAALLYTVEAELNGMYVDVAKGDEIRQQLLAKLVHIS 247

Query: 611 ENIYDLSGE----KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
           E +     E    +FN +SPKQ   +LF       G K K+ +              D
Sbjct: 248 EQVNKGLPEDLPFEFNWASPKQRSALLFGG-----GVKYKSREQSRDETGGLLFAKQD 300


>gi|32442295|gb|AAP82218.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score =  124 bits (312), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 144/423 (34%), Gaps = 75/423 (17%)

Query: 488 DIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D +++S +    R   H + +            IL   K           +++E+   + 
Sbjct: 1   DTLVLSSLACPSRAGGHSLDNWGS---------ILGFPKGDHTDWSTYSPEMREYCKRDV 51

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            ++ ++ L L  +L          +L+  +  ++ +    G  +DQ+ +  + AE+ +  
Sbjct: 52  GLLEKVVLALDEELK--GFSEKSIQLEHQVAWIIQEQMDNGWLLDQEAVFMLLAELKEKK 109

Query: 607 LSLEENIYDLSG--------------------------------------------EKFN 622
           + LE+ ++ + G                                            ++FN
Sbjct: 110 MELEDEVHKVFGPIAKPVRRIVPKIKKDGCMSSVGLKYYGERWSDEICGEHTRLEWQEFN 169

Query: 623 LSSPKQLGDILFTKLKFPS---GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           + S +Q+ + L +    P+       K G       D+   +    P    + ++  + +
Sbjct: 170 IGSRQQIAERLMSAGWKPTKFTPKTPKGGGGNPIVDDVVLADVKGIPEATLMADYLTVVR 229

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD-LGQKIRRAFI 738
            +   A S  + + +   RVH   +    +TGR+    PNL  +   +   G ++R  + 
Sbjct: 230 -RIAMAQSWLDAV-EDDGRVHGEVNSNGAVTGRMTHYSPNLGQVTSGSKIYGPEMRSCWT 287

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL-----DIHRMVAAEIFGVNIEKV 793
            P   KL+  D   +ELR+LAH        ++          D H          N    
Sbjct: 288 VPQGHKLVGMDADGLELRMLAHYMNDPEYTRMVAEGDKDAGTDAHTA--------NQRAA 339

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
               R  AKT  ++ +YG    ++ T +        +   R+    P +    E+  N  
Sbjct: 340 GLNSRDDAKTFIYAFLYGAGDAKIGTIVGKGAKAGRELKARFLDNTPALASLRERVSNSA 399

Query: 854 RQN 856
           R+ 
Sbjct: 400 RRG 402


>gi|329923373|ref|ZP_08278856.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus sp. HGF5]
 gi|328941364|gb|EGG37657.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein
           [Paenibacillus sp. HGF5]
          Length = 104

 Score =  124 bits (312), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 2   QKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
             +  L LVDG + ++RA+YAT     + R   G+P NAI GF   +W  +   +     
Sbjct: 6   NPQPSLMLVDGMALLFRAYYATASSGYIRRTKAGVPTNAIYGFLRYMWDAIDKFQ----P 61

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
           +H A  +D  + TFR E +  YK NRP+ P+ L+PQ  LVR  
Sbjct: 62  THVACCWDMGSKTFRTEQFASYKGNRPEAPDDLVPQFSLVRDV 104


>gi|182682942|ref|YP_001837066.1| flap endonuclease [Enterobacteria phage EPS7]
 gi|182630654|gb|ACB97586.1| flap endonuclease [Enterobacteria phage EPS7]
          Length = 291

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 108/264 (40%), Gaps = 24/264 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +    +L +VDG++  +R        + K           F +     +Q+  K   A  
Sbjct: 16  LASRRNLMIVDGTNLGFR----FKHNNSKKP---------FASSYVSTIQSLAKSYSART 62

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPK-----IPEM--LLPQL-PLVRLATQAFG--IPAI 110
             V+ D     FR E  PDYK NR +       E   L  Q    +R A +      P  
Sbjct: 63  TIVLGDKGKSVFRLEHLPDYKGNRDEKYAQRTEEEKALDEQFFEYLRDAFELCETTFPTF 122

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK 170
            I+G EADD+ A    +       V +ISTD D   L++     +      +  +  + +
Sbjct: 123 TIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDRVSRFSFTTRREYHLRDMYE 182

Query: 171 KWGIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
              +   ++ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+       ++K 
Sbjct: 183 HHNVDDVDQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKY 242

Query: 230 RENILEYAETARLSRKLVMLRTDV 253
            +N+    E    +  LV L T  
Sbjct: 243 IQNLNASEELLFRNLILVDLPTYC 266


>gi|302535235|ref|ZP_07287577.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C]
 gi|302444130|gb|EFL15946.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C]
          Length = 559

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 78/230 (33%), Gaps = 53/230 (23%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           IRRA ++ P  +L+ AD  Q+E R+LA I++     +V     D++  V+ + F  +   
Sbjct: 310 IRRAVVADPGWRLVVADADQMEPRVLAAISRDPAFMEVAGRPEDLYTAVSRQGFSGD--- 366

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
                R  AK      +YG +       L                RFP    Y++     
Sbjct: 367 -----RDKAKIAVLGAVYGQTSGDGLKNL-----------AALRRRFPRAVAYVDDAARA 410

Query: 853 VRQNGYVETIFGRRIH-----------------------------YDEINSPKSSIRNIN 883
             +   V T  GR                                     S  +  R   
Sbjct: 411 GEEGRLVRTWLGRTCPPPVGAAEADEAGIPQEQGPERADSAETGWTPSYASANTRARG-- 468

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
            R   N  +QGSAAD     + ++ ++     +  +++   HDE++   P
Sbjct: 469 -RFTRNFVVQGSAADWALLMLAALRQA--TAGMRAELVFFQHDEVIVHCP 515


>gi|168069855|ref|XP_001786601.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660901|gb|EDQ48585.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 145 MQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIG 200
             LV     +    K          + ++++ G+ P +++ ++ L GD+ DN PG+ GIG
Sbjct: 221 FSLVDEKVSVVIMKKGHGNYMVYTPQTLLEERGLTPAQIIDVKGLMGDASDNYPGVKGIG 280

Query: 201 YKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
            KTA  L+QE+G++E IL +   +  K  R  I    +   LSR+L  +  + P+ + ++
Sbjct: 281 EKTAHKLVQEHGSVEGILASL-ELLSKTVRAKIEADLDMLHLSRRLATIHCEAPVALAMD 339

Query: 261 HLIL 264
               
Sbjct: 340 DCCC 343


>gi|167841478|ref|ZP_02468162.1| 38L [Burkholderia thailandensis MSMB43]
          Length = 787

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 137/390 (35%), Gaps = 58/390 (14%)

Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY---ADSLPNH--- 691
                  ++ G + T    +E +     P +  +   + L+K   TY    D        
Sbjct: 363 GDKKWESSEPGVYSTAGDVIEALGNRGIPFLDAMARVQALTKDLGTYFIRYDEKKKAHVG 422

Query: 692 ---INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
              + +    VH   +  +T+TGRL+S  PNLQN+        K            +I +
Sbjct: 423 MLTLVQLDSIVHHMLNHTNTVTGRLSSSNPNLQNLSKGQKSRVKEVFESRWGEDGVIIQS 482

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV--------SPQ---M 797
           D+S +E+ + A + K   L +  ++  D+H +  A   G   E+V         P+    
Sbjct: 483 DFSSLEVYVQAILTKAEKLIEDLKSGKDMHCVRLAAKEGKTYEEVFELCKIIADPEWDYK 542

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN- 856
           R  AK  +F   YG     +A    +P  E     +    R+  +  Y EK    ++ + 
Sbjct: 543 RTGAKVFSFQRAYGAGNKTIAESTGMPLEEVEALAQAEDERYHEVPAYFEKKTEEIKASR 602

Query: 857 --------------------GYVETIFGRRIHY-----DEINSPKSSIRNINERAAINAP 891
                               G+  T  G+   Y      +    +  +RN       N  
Sbjct: 603 EPAGIWLIHPANGADVQLGVGHSRTPGGKLYTYKETLAPDFLVKRGILRNFMPTEIKNYE 662

Query: 892 IQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           +QG   +I +  M    ++    E+ K+   ++ Q+HD    +  ++  T A+ ++   M
Sbjct: 663 VQGEGGEIAKAGMWLTVRAFYTYENFKMLALLVNQVHDAEYADAHKKVATKAAALLHACM 722

Query: 949 EKA-------CLPKINLRVPLKVNIKVSNN 971
            +A           I L VP   +     N
Sbjct: 723 SEASNFFSWFLQWPIPLHVP--TDTVWGPN 750



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 100/302 (33%), Gaps = 51/302 (16%)

Query: 400 DAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           +A  + K +   +   D     ++  +   +D S      ++ K   T     +     E
Sbjct: 3   NAHRAFKLVGSKMEKRDAGVFAAYYPDAAGVDASREDRIAASKKAQGT----GWFVDLLE 58

Query: 459 NEHFLKIGHNIKYDKLVLHRYG---------------ISMRG--FEDIMLMSYVLDS--- 498
               L  GHNIK+D  VL+  G                   G    D  L  Y+L     
Sbjct: 59  GTKIL-AGHNIKFD--VLYALGNPNSNREANRKAWMKWVAEGGLVWDTQLAEYLLKGQAQ 115

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSR-KSSIPIDKISDSQVQEHAI-------ENSNVIL 550
                D+ + A +     + + +K      +    I   ++ ++ +            I 
Sbjct: 116 EAHMLDLGTTAIEHGGNAKLDEVKLMWAQGVDTIDIPRDKLMDYLVGFEVNGEWEHGDIG 175

Query: 551 QLWLLLRPK-LIVEK---LLHVYERLDKPMIDVVSQMEITGIQID----QDLLKQVSAEI 602
              L+ R + LI  K   L  ++  ++   +    + E+ G+ ++    ++L K+V  E+
Sbjct: 176 NTELIFRSQYLIANKRGQLRSIF--MNMGALIYTIECELNGMFVNQTLAKELAKEVEEEL 233

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           +  L+ +   I      +FN +S      ++F         K K       A+   Q   
Sbjct: 234 AAKLVEVNSYIPADLPFEFNWNSRFHKSALIFGG-----NVKYKAPAPVLDAEGNLQYYA 288

Query: 663 GD 664
             
Sbjct: 289 KK 290


>gi|32442281|gb|AAP82211.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 145/419 (34%), Gaps = 73/419 (17%)

Query: 488 DIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D +++S + D  R   H +    ++ L   + +            ++   +++ +  ++ 
Sbjct: 1   DTLVLSSLFDPQRKGGHSLKVWGER-LGDFKDDYTGG-------FEVYTEEMKAYCKQDV 52

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            V   L+  L  +        +   L+  +  ++ + +  G ++D DL +++     K  
Sbjct: 53  KVTELLYNTLLKEGEAFSQASI--NLEHMVHAIMCEQQANGFELDTDLAQEIYTVCLKET 110

Query: 607 LSLEENIYD---------------------------------------LSGEKFNLSSPK 627
           L +E  I +                                       +  E+FNL SP 
Sbjct: 111 LRIETEIKEFMVPIAVPVKEVTIKRKKDGAIFANQLLEGCNVQGDYTKIMWEEFNLGSPT 170

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP-IIKNILEWRQLSKIKSTYAD 686
           Q+   L  KL +    KTK+G+      +       D P  +K +  W+ L        +
Sbjct: 171 QINKRL-DKLGWNPTVKTKSGESYKICPENLATIPDDAPQAVKGLKAWKVLETRWKLAQE 229

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI------------KTDLGQKIR 734
            L    ++   RVH        +T R A   PN+ NIP                   + R
Sbjct: 230 WLEK--SQGDGRVHGTVITTGAVTHRAAHRGPNMANIPSVPHNKDGIFWKMDGMYAAECR 287

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           + F  P  + L+  D + I+LR+LAH        +   +  DIH       F +N     
Sbjct: 288 QVFKVPEGRLLVGTDAAGIQLRVLAHYMNDPVYTEQVIDG-DIHT------FNMNALGRH 340

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
            + R  AKT  ++ + G    ++A  L     +A   +K ++   P +     +     
Sbjct: 341 CKDRPTAKTFIYAFLLGAGVGKIAEILGCNGGQANVAMKNFYEALPTLKRLKSEASRAA 399


>gi|115374272|ref|ZP_01461557.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368693|gb|EAU67643.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 699

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 82/622 (13%), Positives = 198/622 (31%), Gaps = 125/622 (20%)

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIM 490
           S+   +  + +    ++   +      N     +G N+ YD  V+       +    D +
Sbjct: 26  SIAARELGSERLLDKEQARQFFANAISNRDVHLVGANLPYDLGVMAADNSWLIESIFDAL 85

Query: 491 LMSYV--------------------------LDSGRS-SHDIASIAQKWLSYTRKEILK- 522
               +                          LD      + +A + +++L     E  K 
Sbjct: 86  DAGRLHDVATREALIDIAKGLHGVDPTTGRKLDDDEGARYPLALLVKRYLGLDISEDKKN 145

Query: 523 --------SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK-LIVEKLLHVYERLD 573
                        +P+++       E+   ++   + ++     +   V    +++   D
Sbjct: 146 PLAWRLRYGELDGVPVERWPVE-AVEYPKCDARYTIDVFFKQEEQARDVTNGGNLHAEPD 204

Query: 574 -KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS--PKQLG 630
                 V+    I G++ +   + ++   +           +  +G      S   K+L 
Sbjct: 205 QMRAAFVLHLASIWGLRTNGVAVAELRKRVEAEWQQNRIR-FQAAGIFRADGSKDTKRLA 263

Query: 631 DILFTKLKFPSGAKTKTGQWK--TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
            ++             + ++     A D + +    +P+++++ +  ++ K KSTY D +
Sbjct: 264 ALVTAAYGGNPPYTAPSARYPDGQIATDRDTLLGSGDPLLEDLGKSGKVDKYKSTYLDVV 323

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
              ++     ++  +++  + T   +  +   Q   I+            + P     S 
Sbjct: 324 EAGVSLP---INPRFNVLVSTTRVSSDYQQLPQKGGIRE--------VHEARPGYVFCSV 372

Query: 749 DYSQIELRILA----HIAKITPLYQVFENSLDIHRMVAAEIFG----------VNIEKVS 794
           DY  +ELR +A         + +     + LD+H + AAE  G             + V+
Sbjct: 373 DYGGLELRTMAQRAIWELGYSKMADALNSGLDVHTLAAAEFLGESYAGLLAKVKAKDPVA 432

Query: 795 PQMRRHAKTINF---------SIIYGISPF---------RLATQLRIPR----------- 825
              R+ AK +NF         S++Y              + A    + R           
Sbjct: 433 VAFRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADMCGVERVPVTVQRKPKM 492

Query: 826 ------SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
                   A +  +++   +P   +   K K+     G  +           I       
Sbjct: 493 VCRTCVEVARELDEKWLAAWPEQRDLQRKAKSLTYGGGVADV---------MIPGANILR 543

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHK----LATKMLLQIHDELVFEVPEE 935
                   +N P QG  A   +  M  V + +   +      ++++L +HDEL+ E+  +
Sbjct: 544 GACGYTQILNTPFQGLGAVGCKLGMWRVSREMYTVRSSPLFGSRLVLNVHDELISELLAD 603

Query: 936 E-------ITTASQIIVHSMEK 950
           +           + ++  +M++
Sbjct: 604 DQQRLHDAAERKALLMRDAMKE 625


>gi|229472423|gb|ACQ72726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + ++ M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGVVAKQWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIKAYQLAFVHDE 192


>gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 167/474 (35%), Gaps = 74/474 (15%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  I T       +      +      DD    +     D       D T    + 
Sbjct: 1   MKQISIDIET----YSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSH 503
            +I+  L    +N + +K   N +++++ L R   + +   G+    + S  L    S  
Sbjct: 57  PQIIEVL----DNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLR 112

Query: 504 DIASIAQKWLSYTRKEILKSRKS--------SIPIDKISDSQVQEHAIENSNVILQLWLL 555
           DI S+    L   R++I   ++                + ++   +   +     + +  
Sbjct: 113 DIGSV----LGLPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYN- 167

Query: 556 LRPKLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLKQVSAEISKNLL 607
              +  VE  + + ++L+   +         +   +   GI+IDQ L+       +    
Sbjct: 168 ---QRDVEVEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHD 224

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
              +   +L+G   N +SP QL D L  +     G KT +    + AQ L+      + +
Sbjct: 225 QYLQTAKELTGLA-NPNSPLQLKDWLQQQ-----GIKTNSLSKASVAQLLQTTTGTVHQV 278

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--- 724
           +        LSK       ++   + +  +         +  TGR A     +QN+P   
Sbjct: 279 LALRQL---LSKSSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNS 335

Query: 725 -------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                                    +   L Q IR AFI         AD+S +E R++A
Sbjct: 336 MPDLEEARELVKQGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIA 395

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYG 811
            ++      + F  + DI+   A+++FGV + K  ++ ++R+  K    ++ YG
Sbjct: 396 WLSNEKWRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449


>gi|168705115|ref|ZP_02737392.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 125

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 9/124 (7%)

Query: 855 QNGYVETIFGRRIHY----DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
           + G ++TI GR   +     ++NS     R +  R AIN  IQGSAAD+ ++AM+  H  
Sbjct: 1   ERGRLQTILGRWRAFNLDGRDVNST-YQGRTMAAREAINYEIQGSAADLIKKAMLGAHAR 59

Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970
           +   +L  +MLL +HDELVFE P  E+   ++++   M  A    I L VPLKV++    
Sbjct: 60  MAAQRLHARMLLTVHDELVFEAPPAEVEPLARLVREEMTSA----IKLDVPLKVDVAAGP 115

Query: 971 NWQE 974
           NW E
Sbjct: 116 NWLE 119


>gi|310818189|ref|YP_003950547.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309391261|gb|ADO68720.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 630

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/524 (13%), Positives = 175/524 (33%), Gaps = 97/524 (18%)

Query: 502 SHDIASIAQKWLSYTRKEILK---------SRKSSIPIDKISDSQVQEHAIENSNVILQL 552
            + +A + +++L     E  K              +P+++       E+   ++   + +
Sbjct: 55  RYPLALLVKRYLGLDISEDKKNPLAWRLRYGELDGVPVERWPVE-AVEYPKCDARYTIDV 113

Query: 553 WLLLRPK-LIVEKLLHVYERLD-KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           +     +   V    +++   D      V+    I G++ +   + ++   +        
Sbjct: 114 FFKQEEQARDVTNGGNLHAEPDQMRAAFVLHLASIWGLRTNGVAVAELRKRVEAEWQQNR 173

Query: 611 ENIYDLSGEKFNLSS--PKQLGDILFTKLKFPSGAKTKTGQWK--TTAQDLEQINCGDNP 666
              +  +G      S   K+L  ++             + ++     A D + +    +P
Sbjct: 174 IR-FQAAGIFRADGSKDTKRLAALVTAAYGGNPPYTAPSARYPDGQIATDRDTLLGSGDP 232

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           +++++ +  ++ K KSTY D +   ++     ++  +++  + T   +  +   Q   I+
Sbjct: 233 LLEDLGKSGKVDKYKSTYLDVVEAGVSLP---INPRFNVLVSTTRVSSDYQQLPQKGGIR 289

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILA----HIAKITPLYQVFENSLDIHRMVA 782
                       + P     S DY  +ELR +A         + +     + LD+H + A
Sbjct: 290 E--------VHEARPGYVFCSVDYGGLELRTMAQRAIWELGYSKMADALNSGLDVHTLAA 341

Query: 783 AEIFG----------VNIEKVSPQMRRHAKTINF---------SIIYGISPF-------- 815
           AE  G             + V+   R+ AK +NF         S++Y             
Sbjct: 342 AEFLGESYAGLLAKVKAKDPVAVAFRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLL 401

Query: 816 -RLATQLRIPR-----------------SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
            + A    + R                   A +  +++   +P   +   K K+     G
Sbjct: 402 AKRADMCGVERVPVTVQRKPKMVCRTCVEVARELDEKWLAAWPEQRDLQRKAKSLTYGGG 461

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-- 915
             +           I               +N P QG  A   +  M  V + +   +  
Sbjct: 462 VADV---------MIPGANILRGACGYTQILNTPFQGLGAVGCKLGMWRVSREMYTVRSS 512

Query: 916 --LATKMLLQIHDELVFEVPEEE-------ITTASQIIVHSMEK 950
               ++++L +HDEL+ E+  ++           + ++  +M++
Sbjct: 513 PLFGSRLVLNVHDELISELLADDQQRLHDAAERKALLMRDAMKE 556


>gi|147917349|ref|YP_001218832.1| DNA polymerase [Pseudomonas phage 119X]
          Length = 801

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 114/723 (15%), Positives = 228/723 (31%), Gaps = 92/723 (12%)

Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN--NDSYTKIVNTKDIQ 378
            R + I T   S + D+ S +      + L  + L+K+    +      YT + +T+   
Sbjct: 75  WRGSRIDTEIPSIVIDKISNVYQTNEGEWLLQKDLKKIRYCRVPGVKFDYTVLTDTRMFS 134

Query: 379 QWVQKLETIGSASFKIITD------------TMDAFHSKPIAIAISTLDQKDDTSF---- 422
             +  L         I T               D    +   +  + +     +      
Sbjct: 135 AALDILSKSLIIGGDIETQQWQVKRGTKKVPCYDPATLQINGLGETWITVVSFSGLMPDG 194

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
           K++T  + L V+   D    +      L +L+    +    K  HN  YD   L RY  +
Sbjct: 195 KIKTFVLPL-VNGMNDFWKTDEEYAAALLFLQMVMRS-DIPKCFHNGLYDSFHLMRYHAA 252

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
                 D M +S+   S   S D+  +   WL Y  KE     K     +  +   ++ +
Sbjct: 253 PNNWIFDTMGLSHSWYS-ELSKDVGFLCS-WLLYDHKEW----KYMADREHKAIGGIESY 306

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHV-YERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
               +     +   L   L    +  +   +   P++         G +++ +   ++  
Sbjct: 307 WKYAAYDTHMMMRALIELLKNGDIWMLRNYKKQFPLVYPSLYGAFEGFKVNNETRLKLVE 366

Query: 601 EISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           +  + L S  +++  ++ + +FN  SP Q+ + L+  L      + K      T +    
Sbjct: 367 KAEERLESALKDLRIMTDDPEFNPGSPDQVSEFLYEVLGAKRPPRAK--SKSKTDKKSRA 424

Query: 660 INCGDNPIIKNILE----WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                +PI     +    +    K  STY             R+        T TGR AS
Sbjct: 425 FVASQHPIFALFSDRVNNYSLEKKALSTYFSFRQ-----WNSRLLYSLDPFGTDTGRFAS 479

Query: 716 LEPNLQNIPIKTDLGQKIRRA---FISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                    I T +  +   A   +           D+S+ E    A++++ + L +   
Sbjct: 480 RASAA---WIGTQIQNQPVYAKEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKALC 536

Query: 773 --------NSLDIHRMVAAEIFGVNIEKVSPQMRRHA-KTINFSIIYGISPFRLATQLR- 822
                   N  D ++++    F +  E V+ + R    K I     Y + P      L  
Sbjct: 537 FPDLDNEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLDD 596

Query: 823 -------------------------IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
                                     P+  A   +  Y   FP + ++ E     V    
Sbjct: 597 IQTLFLAAKILGVVLTLNPKAPKEKTPKDFAKQLLDAYHIPFPEVQQWWESIFMEVLTTN 656

Query: 858 YV--ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            +        R  + +    K   R      + N  +     D      +  ++ +   K
Sbjct: 657 KLINPITGHVRYFFGDPRRNKKIQRQAVAHQSQNFSV-----DNLNTGYLKAYQYMLSLK 711

Query: 916 LATKMLL--QIHDELVFEVPEEEITTASQIIVHSME-KACLPKINLRVPLKVNIKVSNNW 972
               + L  QIHD LV +V          ++   +  +  +    + + ++V      NW
Sbjct: 712 DPRILRLKTQIHDSLVGQVLVGYARQVIPVLKELLTPRVIVHGQEMVINVEVECFH-TNW 770

Query: 973 QEE 975
           +++
Sbjct: 771 KDK 773


>gi|229472173|gb|ACQ72601.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472401|gb|ACQ72715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + ++ M+  H  ++ +++    L  +HDE
Sbjct: 157 LQGSAGCVAKQWMVHTHNVIKLNQIKAYQLAFVHDE 192


>gi|229472235|gb|ACQ72632.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472491|gb|ACQ72760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|322489593|emb|CBZ24851.1| mitochondrial DNA polymerase I protein D,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1579

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 138/362 (38%), Gaps = 62/362 (17%)

Query: 668  IKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               ILE R L K+  TY +S      + + ++     +H       T TGRLAS  PN Q
Sbjct: 1209 ASVILELRALEKLIGTYYESTDGGTGMVSLVHSMDSCIHHELIHNKTNTGRLASANPNCQ 1268

Query: 722  NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            NIP   +    +R  FIS    K   I ADYSQ+E+  LA +A    + +   N++D H 
Sbjct: 1269 NIPK--EDKSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHC 1326

Query: 780  MVAAEI--------------FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
                 +                   E V  ++R+ AK  +F   YG     L+    + +
Sbjct: 1327 KRVTMMRPDLKYTDVLQRAKKNKEPEFV--KLRQQAKIFSFQRQYGAGVRMLSQSTGLTQ 1384

Query: 826  SEAADYIKRYFHRFPGIHEY--------------IEKTKNFVRQNGYVETIF----GRRI 867
             +    I++    + G+  +              ++     VR + + + +F    G R 
Sbjct: 1385 DQVRMLIEKENETYRGVEVFNKMVTLSANSYDASLQNGVRNVRGHQFFKGMFPVLTGSRY 1444

Query: 868  HYDEINSPKSSIR---------NINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLA 917
             + E + P+  +R         N +     N P+QG A +I +  +  + +  L ++   
Sbjct: 1445 VFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIVQVMLGVLWRHFLANNNYN 1504

Query: 918  TKMLL--QIHDELVFEVPEEEITTASQIIVHSME------KACLPKINLRVPLKVNIKVS 969
               +L   +HD +  +         ++ +   M+       A  P++ + V    ++   
Sbjct: 1505 GLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIMDGARTVLNALYPEMQVAVDFPCDVVAG 1564

Query: 970  NN 971
             +
Sbjct: 1565 ES 1566



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 29/202 (14%)

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMR-------GFEDIMLMSYVL--DSGRSSH--DIAS 507
           +E+ + +GHNIK+D L + R  +  R          D M   Y+L     +  H   +  
Sbjct: 546 DEYDVIVGHNIKFDMLHIWR-DVEFRKFLRRGGKIWDTMYGEYLLTGQEVKLGHGAGLED 604

Query: 508 IAQKWLSYTRKEILKSRKSSIPID--KISDSQVQEHA---IENSNVILQLWLLLRPKLIV 562
           +A+ +   T K     R  +   +  +I  S + E+    +EN+ +I      +   L  
Sbjct: 605 VAKSYGGQTMKLDAVKRAWAEGKETYEIPYSTLTEYLHGDLENTELIFCKH--MERALEQ 662

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-- 620
            +++    R++   +   ++ME  G++ + DL ++ S E+   +  L  ++ +   ++  
Sbjct: 663 RQVIIGCARME--GLLCTTEMEYNGLKTNVDLAQRQSNELMTKVSELRRHLEESIPQEIP 720

Query: 621 ------FNLSSPKQLGDILFTK 636
                 FN SS + L    F  
Sbjct: 721 HDCRKFFNWSSNQHLITFFFGG 742


>gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 673

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 108/693 (15%), Positives = 222/693 (32%), Gaps = 153/693 (22%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
             I T +        + +       ++           D ++    D T    +  ++L 
Sbjct: 6   IDIETRSPKPLPK--VGV---WAYAEEAKITLCAYAHNDETIKLW-DCTANPVMPSDLLK 59

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG---FEDIMLM------SYVLDSGRS 501
           +LK    ++  + + HN  +++++  +   I++          L       + + ++  +
Sbjct: 60  HLK----DDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMA 115

Query: 502 SHDIASIAQKWLSYTR-KEILKSRKSSIPIDKISDSQVQ------EHAIENSNVILQLWL 554
                ++ +            K      P D    + VQ      E+   +     +L+ 
Sbjct: 116 LKFPETLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYK 175

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            L P    E+ L + ++          ++   G  ID +L+K++   I+     L+E + 
Sbjct: 176 RLTPLSENERHLWLLDQ----------EINDRGYAIDLNLVKKLQELIAFEREKLDEELK 225

Query: 615 DLS-GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
            L+ G   +      L   LF  +        ++      +Q        D  I+ N L 
Sbjct: 226 TLTFGVIGSSRKTDLLNKYLFLYMGLDLPDMAESTIATALSQPNITQRAKD--ILNNRLS 283

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
             Q + +K    ++L   ++   +   T     ++ TGR +      QN+P      + I
Sbjct: 284 SSQSAILK---LNTLSGAVSPDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETI 340

Query: 734 ----------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
                                 R   I+   KKL+ AD + IE R+LA IA        F
Sbjct: 341 EEAIESSNFPSDDPLRFASDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAF 400

Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF---RLATQLRIPRSEA 828
            N  DI++   ++ F + +  V+   R   K +  ++ Y         +A+ L +   + 
Sbjct: 401 ANGEDIYKTAYSKAFNIPLSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQF 460

Query: 829 ADYIKR----------------YFHRFPGIHEY---------IEKTKNFVRQNGYVETIF 863
           +  IK+                    +P    +         + KT    +  G V+   
Sbjct: 461 SKSIKQTATGDDWEQAQRRCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWK 520

Query: 864 GRRIHYDEI--NSPKSSIRNIN-------------------------------ERAAINA 890
                +D +  +    S R +                                +R+ +N 
Sbjct: 521 DCEEAFDCVIKDGRSISARRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNT 580

Query: 891 ------------------PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
                              +Q  + DI    MI+  ++         ++L +HDE+V E 
Sbjct: 581 ATAQIMRERTYGGKLTENIVQAISRDILACGMINATRA------GYDIVLTVHDEIVCET 634

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           P +    +S  +   M +   PK    +PLK  
Sbjct: 635 P-DTPEFSSDELCFLMTQ--NPKWAKGLPLKAE 664


>gi|111223189|ref|YP_713983.1| putative DNA polymerase I [Frankia alni ACN14a]
 gi|111150721|emb|CAJ62422.1| putative DNA polymerase I [Frankia alni ACN14a]
          Length = 669

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 138/387 (35%), Gaps = 75/387 (19%)

Query: 582 QMEITGIQIDQDLLKQVSAEI---------SKNLLSLEENIYDLSG--EKFNLSSPKQLG 630
           ++E  G+ +D+   + + A++          +       +   L+      +L +P  + 
Sbjct: 278 ELERDGLPVDRATAETLLADLVGPPPRTDADELAARRRRDAPVLAHLRGPVDLRNPAAVR 337

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
             L          +T       T     +     +P +  +L WR+  +I +TY     +
Sbjct: 338 AAL----------RTVGVDVPDTRSGRLEPLRDAHPAVAALLAWRRTERIATTYGHRWLD 387

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
                  R+   +  +    GR+ + +  L N+P        +R A ++ P +  + AD 
Sbjct: 388 THVGPDGRLRGAWHGSDGAAGRMTA-QAGLHNLPAD------LRCAVVAEPGRVFVRADL 440

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            QIE R+LA ++    L    +   D++  VAA++          + R HAK    + +Y
Sbjct: 441 GQIEPRVLAVVSADPALAAATQAD-DMYAPVAAQL---------GRDRAHAKVAMLAAMY 490

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G                A + ++R    +P    Y++      R    + T  GR +   
Sbjct: 491 GQ-----------TTGAAGEALRRMRRAYPTALAYLDAADAAGRSGRDLRTYGGRLVRLA 539

Query: 871 EINSP------------------------KSSIRNINERAAINAPIQGSAADITRRAMIS 906
               P                                 R A NA IQG AA++ +   ++
Sbjct: 540 PAAGPPDRAAGPPRGLTDPAPPDEASPAVGGVTEQARGRFARNAVIQGPAAELFKAWAVT 599

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVP 933
           V   L    L  +++L +HDEL+  VP
Sbjct: 600 VRAELPA--LGGEIVLCLHDELLLHVP 624


>gi|297476119|ref|XP_002688485.1| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
 gi|296486338|gb|DAA28451.1| polymerase (DNA directed) nu [Bos taurus]
          Length = 158

 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKML 921
            GRR     I +    +R   ER A N  +QGSAAD+ + AMI +  ++     L  ++L
Sbjct: 1   MGRRRPLPRIRAHDPQLRAQAERQAANFVVQGSAADLCKMAMIRIFTAMATSPTLTARLL 60

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSME---KACLPKINLRVPLKVNIKVSNNWQ 973
            QIHDEL+FEV + ++   + ++  +ME        ++ L+VPLKV++    +W 
Sbjct: 61  AQIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKVSLSAGRSWG 115


>gi|229472349|gb|ACQ72689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDATPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R M+  H  ++ +++    L  +HDE
Sbjct: 157 LQGSAGCVAKRWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|229472239|gb|ACQ72634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++ ++I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNSDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472237|gb|ACQ72633.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472591|gb|ACQ72810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIKAYQLAFVHDE 192


>gi|154334068|ref|XP_001563289.1| mitochondrial DNA polymerase I protein D [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060301|emb|CAM45712.1| putative mitochondrial DNA polymerase I protein D [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1578

 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 133/367 (36%), Gaps = 62/367 (16%)

Query: 663  GDNPIIKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASL 716
             D+     ILE R L K+  TY +S      + + ++     +H       T TGRLAS 
Sbjct: 1203 HDDKTASIILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRLASA 1262

Query: 717  EPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENS 774
             PN QNIP   +    +R  FIS    K   I ADYSQ+E+  LA +A    + +    +
Sbjct: 1263 NPNCQNIPK--EDKSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRQN 1320

Query: 775  LDIHRMVAAEI--------------FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820
            +D H      +                  +E V  ++R+ AK  +F   YG     L+  
Sbjct: 1321 VDFHCKRVTMMRPDLKYTDVLQRAKKNKELEFV--KLRQQAKIFSFQRQYGAGVRMLSQS 1378

Query: 821  LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV------RQNG--YVETIFGRRIHYDEI 872
              + + +    I++    + G+  + +             QNG   V      +  +  +
Sbjct: 1379 TGLTQDQVRMLIEKENETYRGVEVFNKMVALSANSYDASLQNGVRNVRGHQFFKGMFPVL 1438

Query: 873  NS----------PKSSIR---------NINERAAINAPIQGSAADITRRAMISVHKS-LE 912
                        P+  +R         N +     N P+QG A +I +  +  + +  L 
Sbjct: 1439 TGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIVQVMLGVLWRHFLA 1498

Query: 913  DHKLATKMLL--QIHDELVFEVPEEEITTASQIIVHSME------KACLPKINLRVPLKV 964
            ++      +L   +HD +  +         ++ +   M        A  P++ + V    
Sbjct: 1499 NNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIMNGVQTVLNALYPEMQVAVDFPC 1558

Query: 965  NIKVSNN 971
            ++    +
Sbjct: 1559 DVVAGES 1565



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 38/278 (13%)

Query: 392 FKIITDTM-------DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
             + T T+       + F  +   +     D K +           +++     S     
Sbjct: 470 LDLETTTIRRYKRVANPFTKENYVVLSGARDYKGNVFLPRRYFDRSVALRYDDPSVTSQN 529

Query: 445 LTKEILSYLKKFFE--NEHFLKIGHNIKYDKLVLHRYGISMR-------GFEDIMLMSYV 495
              E  S    F    +E+ + +GHNIK+D L + R  +  R          D M   Y+
Sbjct: 530 HLVEKSSKDSLFLPPLDEYDVIVGHNIKFDMLHIWR-DVEFRRFLRRGGKIWDTMYAEYL 588

Query: 496 L--DSGRSSH--DIASIAQKWLSYTRKEILKSRKSSIPID--KISDSQVQEHA---IENS 546
           L     +  H   +  +A+ +   T K     +  S   +  +I  S + E+    +EN+
Sbjct: 589 LTGHEVKLGHGAGLEDVAKSYGGQTMKLDAVKQAWSEGKETYEIPYSTLTEYLHGDLENT 648

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            +I      +   L   +++    R++   +   ++ME  G++ + DL ++ S E++  +
Sbjct: 649 ELIFCKH--MERALEQRQVIICCARME--GLLCTTEMEYNGLKTNLDLAQRQSNELTTKV 704

Query: 607 LSLEENIYDLSGEK--------FNLSSPKQLGDILFTK 636
             L   + +    +        FN SS + L    F  
Sbjct: 705 SELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFFGG 742


>gi|229472341|gb|ACQ72685.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYTMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472561|gb|ACQ72795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKVATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 157 LQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|32442287|gb|AAP82214.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score =  120 bits (302), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 145/421 (34%), Gaps = 74/421 (17%)

Query: 488 DIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D +++S + +  R   H       K L Y + +       S         ++ ++ + + 
Sbjct: 1   DTLVLSRLFNPNREGGHSXXXRGYK-LGYHKIDFSDYLNYS--------KEMLDYCVRDV 51

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            +   +   LR +            +++ +  ++ Q E+ G + D      + A++ +  
Sbjct: 52  QLNAVVLKKLREE--SRGFSKQCIAIEQGVARIMKQQEVNGFKFDLQSALLLLAKLREKK 109

Query: 607 LSLEENIYDLSGEK---------------------------------------------- 620
            S+E+ +++    K                                              
Sbjct: 110 QSIEDEVHNTFKPKWVDDKLVKPYIKKDGDLSKRGLTDDEYQRCLDTNNFEPFMRQTLQD 169

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FNL S KQ+G+ L     +     T TGQ     +         +   K I ++  L K 
Sbjct: 170 FNLGSRKQIGEYLID-FGWKPERFTPTGQPIVDEK-TLSAITHIHE-AKLIADFLLLQK- 225

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + +   RVH F      +TGR+    PN+  +P + +  G++ R  +  
Sbjct: 226 RIAQVDSWVEGVQEDG-RVHGFVIPNGAITGRMTHRNPNVAQVPAVYSPYGKECRACWTV 284

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
                LI  D S +E+R+LAH            N  DIH          N +    + R 
Sbjct: 285 EEGNVLIGVDASGLEIRMLAHYMNDEEYTNEILNG-DIHTA--------NQKLAKLESRD 335

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AKT  ++++YG    +L + +    S+     + +F   P      ++ +       YV
Sbjct: 336 KAKTFIYALMYGAGDEKLGSVVGGSTSDGKRARQYFFDNKPTFKSLRDRVQR-ASALDYV 394

Query: 860 E 860
           E
Sbjct: 395 E 395


>gi|108757261|ref|YP_629462.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
 gi|108461141|gb|ABF86326.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
          Length = 669

 Score =  120 bits (302), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 91/624 (14%), Positives = 202/624 (32%), Gaps = 129/624 (20%)

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR------------- 478
           S+  +   + +     +   + ++         +G N+ YD  V+               
Sbjct: 26  SIAAAAPGSERLLDKAQARQFFREAIAASDTRLVGANLAYDLGVMAADDPSLVAPIFAAL 85

Query: 479 -----YGISMR-GFEDIMLMSYVLDSGRSS---------HDIASIAQKWLSYTRKEILKS 523
                + + +R    DI    Y +D              + +A + Q++L     E  K+
Sbjct: 86  EAGRLHCVQIREALIDIARGLYGVDPSTGRKLDDDEGARYPLALLVQRYLGLDISEDKKN 145

Query: 524 RKSS----IPIDKISDS----QVQEHAIENSNVILQLWLLLRP-KLIVEKLLHVYERLD- 573
            K+       +D +       +   +   ++   L ++              +++   + 
Sbjct: 146 PKAWRLRYAELDGVPVERWPTEAAAYPKRDARYTLDVFFRQEAVARETPNGGNLHAEAEQ 205

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN-----IYDLSGEKFNLSSPKQ 628
                 +    I G++ + D +  +   + +             IY   G K +    K+
Sbjct: 206 MRAAFALHLASIWGLRTNGDSVAVLRERVEREWGENRAKFQAAGIYRADGTKDS----KR 261

Query: 629 LGDILFTKLKFPSGAKTKTGQWK--TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           L  ++             + ++     A D + +    + +++++ +  ++ K KSTY D
Sbjct: 262 LAALVTAAYDGQPPITAPSDRFPDGQVATDRDTLLGSGDALLEDLGKSGRVDKYKSTYLD 321

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
                +   T             T R++S    L            IR    + P     
Sbjct: 322 ----VVEAGTSLPINPRFNVLVSTTRVSSDYQQLPQKG-------GIREVHEARPGFAYC 370

Query: 747 SADYSQIELRILA----HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM----- 797
           S DY  +ELR +A         + + +   + LD+H + AAE  G + +++ P++     
Sbjct: 371 SVDYGGLELRTMAQRAIWELGYSKMAEALNSGLDVHTLAAAEFLGASYDELLPKVKAKDP 430

Query: 798 -----RRHAKTINF---------SIIYGISPF---------RLATQLRIPR--------- 825
                R+ AK +NF         S++Y              + A    I R         
Sbjct: 431 LAVAFRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADVCGIERIVITVQRKP 490

Query: 826 --------SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
                     A +   ++ + +P   E  ++ K+     G+ +           I     
Sbjct: 491 KMVCRACVEVAKELDTKWLNAWPEQRELQQRAKSSTYGGGFADV---------MIPGANI 541

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSL----EDHKLATKMLLQIHDELVFEVP 933
                     +N P QG  A   + AM  V + +          ++++L +HDEL+ E+P
Sbjct: 542 LRGGCGYTQILNTPFQGLGAVGCKLAMWRVSREMYVDRRSPLYGSRLVLMVHDELISELP 601

Query: 934 E-------EEITTASQIIVHSMEK 950
                   +     + ++  +M++
Sbjct: 602 ANSAQRMHDAAERKAYLMREAMKE 625


>gi|229472337|gb|ACQ72683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 26/200 (13%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R  F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKI 66

Query: 794 SPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIE 847
               RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + + 
Sbjct: 67  GI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATTKGKEIRQAYMDAIPGLEKLVT 125

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             K+   ++GY+    GRR   D                A+N  +QGSA  + +  M+  
Sbjct: 126 AVKSKA-ESGYIRLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHT 172

Query: 908 HKSLEDHKLATKMLLQIHDE 927
           H  ++ +++    L  +HDE
Sbjct: 173 HNVIKLNQIEAYQLAFVHDE 192


>gi|2392326|pdb|1EXN|A Chain A, T5 5'-Exonuclease
 gi|2392327|pdb|1EXN|B Chain B, T5 5'-Exonuclease
          Length = 290

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 105/262 (40%), Gaps = 24/262 (9%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
              +L +VDG++  +R        + K           F +     +Q+  K   A    
Sbjct: 17  SRRNLXIVDGTNLGFR----FKHNNSKKP---------FASSYVSTIQSLAKSYSARTTI 63

Query: 63  VIFDYPAVTFRNEIYPDYKANRPK-----IPEM--LLPQL-PLVRLATQAFG--IPAIEI 112
           V+ D     FR E  P+YK NR +       E   L  Q    ++ A +      P   I
Sbjct: 64  VLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFTI 123

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
           +G EADD  A    +       V +ISTD D   L++     +      +  +    +  
Sbjct: 124 RGVEADDXAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHLRDXYEHH 183

Query: 173 GIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            +   E+ + L+A+ GD  DNI G+ GIG K    +++E+GN+ +I+       ++K  +
Sbjct: 184 NVDDVEQFISLKAIXGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQ 243

Query: 232 NILEYAETARLSRKLVMLRTDV 253
           N+    E    +  LV L T  
Sbjct: 244 NLNASEELLFRNLILVDLPTYC 265


>gi|229472351|gb|ACQ72690.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472367|gb|ACQ72698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472447|gb|ACQ72738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 157 LQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|229472215|gb|ACQ72622.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 26/200 (13%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R  F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKI 66

Query: 794 SPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIE 847
               RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + + 
Sbjct: 67  GI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVT 125

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  
Sbjct: 126 AVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHT 172

Query: 908 HKSLEDHKLATKMLLQIHDE 927
           H  ++ +++    L  +HDE
Sbjct: 173 HNVIKLNQIKAYQLAFVHDE 192


>gi|229472249|gb|ACQ72639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIEAYQLAFIHDE 192


>gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 164/477 (34%), Gaps = 80/477 (16%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  I T       +             DD    +    +D       D T    + 
Sbjct: 1   MKQLSIDIET----YSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSH 503
            +I+  L    ++   +K   N +++++ L R   + +   G+    + S  L    S  
Sbjct: 57  SQIIQAL----DDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLR 112

Query: 504 DIASIAQKWLSYTRKEILKSRKS--------SIPIDKISDSQVQEHAIENSNVILQLWLL 555
           D+ ++    L   R++I   ++                + ++   +   +     + +  
Sbjct: 113 DVGTV----LGLPRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYN- 167

Query: 556 LRPKLIVEKLLHVYERLDKPMID--------VVSQMEITGIQIDQDLLK---QVSAEISK 604
              +  VE  + + ++  +  +         +   +   GI+IDQ L+    +   E   
Sbjct: 168 ---QRDVEVEMEITQKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHA 224

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
             L   + +  L+    N +SP QL + L  +     G +T +    + AQ L+      
Sbjct: 225 QYLQTSQQLTGLA----NPNSPLQLKNWLHQQ-----GVETDSLAKASVAQLLQTTTGTV 275

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           + ++        LSK       ++   + K            +  TGR A     +QN+P
Sbjct: 276 HQVLALRQL---LSKSSVKKYQAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLP 332

Query: 725 ----------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELR 756
                                       +   L Q IR AFI         AD+S +E R
Sbjct: 333 RNSMPDLEEARALVKQGNTTALAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEAR 392

Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYG 811
           ++A ++        F  + DI+   A+++FGV + K  ++ ++R+  K    ++ YG
Sbjct: 393 VIAWLSGEEWRQAAFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449


>gi|229472253|gb|ACQ72641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 157 LQGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|229472189|gb|ACQ72609.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472331|gb|ACQ72680.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472419|gb|ACQ72724.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472601|gb|ACQ72815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + ++ M+  H  ++ +++    L  +HDE
Sbjct: 157 LQGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|157866402|ref|XP_001681907.1| mitochondrial DNA polymerase I protein D [Leishmania major strain
            Friedlin]
 gi|68125206|emb|CAJ03183.1| putative mitochondrial DNA polymerase I protein D [Leishmania major
            strain Friedlin]
          Length = 1577

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 140/364 (38%), Gaps = 66/364 (18%)

Query: 668  IKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               ILE R L K+  TY +S      + + ++     +H       T TGRLAS  PN Q
Sbjct: 1207 ASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRLASANPNCQ 1266

Query: 722  NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            NIP   +    +R  FIS    K   I ADYSQ+E+  LA +A    + +   N++D H 
Sbjct: 1267 NIPK--EDKSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHC 1324

Query: 780  ----------------MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
                              A +I     E V  ++R+ AK  +F   YG     L+    +
Sbjct: 1325 KRVTMMRPDLKYTDVLQRAKKI--KEPEFV--KLRQQAKIFSFQRQYGAGVRMLSQSTGL 1380

Query: 824  PRSEAADYIKRYFHRFPGIHEY--------------IEKTKNFVRQNGYVETIF----GR 865
             + +    I++    + G+  +              ++     VR + + + +F    G 
Sbjct: 1381 TQDQVRMLIEKENETYRGVEVFNKMVTLSANSYDASLQNGVRNVRGHQFFKGMFPVLTGS 1440

Query: 866  RIHYDEINSPKSSIR---------NINERAAINAPIQGSAADITRRAMISVHKS-LEDHK 915
            R  + E + P+  +R         N +     N P+QG A +I +  +  + +  L ++ 
Sbjct: 1441 RYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIVQVMLGVLWRHFLANNN 1500

Query: 916  LATKMLL--QIHDELVFEVPEEEITTASQIIVHSME------KACLPKINLRVPLKVNIK 967
                 +L   +HD +  +         ++ +   M+       A  P++ + V    ++ 
Sbjct: 1501 YNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIMDGARTVLNALYPEMQVTVDFPCDVV 1560

Query: 968  VSNN 971
               +
Sbjct: 1561 AGES 1564



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 83/202 (41%), Gaps = 29/202 (14%)

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMR-------GFEDIMLMSYVL--DSGRSSH--DIAS 507
           +E+ + +GHNIK+D L + R  +  R          D M   Y+L     +  H   +  
Sbjct: 546 DEYDVIVGHNIKFDMLHIWR-DVEFRKFLRRGGKIWDTMYGEYLLTGHEVKLGHGAGLED 604

Query: 508 IAQKWLSYTRKEILKSRKSSIPID--KISDSQVQEHA---IENSNVILQLWLLLRPKLIV 562
           +A+ +   T K     R  +   +  +I  S + E+    +EN+ +I      +   L  
Sbjct: 605 VAKSYGGQTMKLDAVKRAWAEGKETYEIPYSILTEYLHGDLENTELIFCKH--MERALEQ 662

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-- 620
            +++    R++   +   ++ME  G++ + DL ++ S E+   +  L   + +    +  
Sbjct: 663 RQVIICCARME--GLLCTTEMEYNGLKTNVDLAQRQSNELMTKVSELRRQLEESIPHEIP 720

Query: 621 ------FNLSSPKQLGDILFTK 636
                 FN SS + L  + F  
Sbjct: 721 HDCRKFFNWSSNQHLITLFFGG 742


>gi|321399177|emb|CAM66559.2| putative mitochondrial DNA polymerase I protein D [Leishmania
            infantum JPCM5]
          Length = 1579

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 140/364 (38%), Gaps = 66/364 (18%)

Query: 668  IKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               ILE R L K+  TY +S      + + ++     +H       T TGRLAS  PN Q
Sbjct: 1209 ASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRLASANPNCQ 1268

Query: 722  NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            NIP   +    +R  FIS    K   I ADYSQ+E+  LA +A    + +   N++D H 
Sbjct: 1269 NIPK--EDKSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHC 1326

Query: 780  ----------------MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
                              A +I     E V  ++R+ AK  +F   YG     L+    +
Sbjct: 1327 KRVTMMRPDLKYTDVLQRAKKI--KEPEFV--KLRQQAKIFSFQRQYGAGVRMLSQSTGL 1382

Query: 824  PRSEAADYIKRYFHRFPGIHEY--------------IEKTKNFVRQNGYVETIF----GR 865
             + +    I++    + G+  +              ++     VR + + + +F    G 
Sbjct: 1383 TQDQVRMLIEKENETYRGVEVFNKMVTLSANSYDASLQNGVRNVRGHQFFKGMFPVLTGS 1442

Query: 866  RIHYDEINSPKSSIR---------NINERAAINAPIQGSAADITRRAMISVHKS-LEDHK 915
            R  + E + P+  +R         N +     N P+QG A +I +  +  + +  L ++ 
Sbjct: 1443 RYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIVQVMLGVLWRHFLANNN 1502

Query: 916  LATKMLL--QIHDELVFEVPEEEITTASQIIVHSME------KACLPKINLRVPLKVNIK 967
                 +L   +HD +  +         ++ +   M+       A  P++ + V    ++ 
Sbjct: 1503 YNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIMDGARTVLNALYPEMQVTVDFPCDVV 1562

Query: 968  VSNN 971
               +
Sbjct: 1563 AGES 1566



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 29/202 (14%)

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMR-------GFEDIMLMSYVL--DSGRSSH--DIAS 507
           +E+ + +GHNIK+D L + R  +  R          D M   Y+L     +  H   +  
Sbjct: 546 DEYDVIVGHNIKFDMLHIWR-DVEFRKFLRRGGKIWDTMYGEYLLTGHEVKLGHGAGLED 604

Query: 508 IAQKWLSYTRKEILKSRKSSIPID--KISDSQVQEHA---IENSNVILQLWLLLRPKLIV 562
           +A+ +   T K     R  +   +  +I  S + E+    +EN+ +I      +   L  
Sbjct: 605 VAKSYGGQTMKLDAVKRAWAEGKETYEIPYSILTEYLHGDLENTELIFCKH--MERALEQ 662

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-- 620
            +++    R++   +   ++ME  G++ + DL ++ S E+   +  L   + +    +  
Sbjct: 663 RQVIICCARME--GLLCTTEMEYNGLKTNVDLAQRQSNELMTKVSELRRQLEESIPHEIP 720

Query: 621 ------FNLSSPKQLGDILFTK 636
                 FN SS + L    F  
Sbjct: 721 HDCRKFFNWSSNQHLITFFFGG 742


>gi|229472457|gb|ACQ72743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +  M+  H  ++ +++    L  +HDE
Sbjct: 157 LQGSAGCVAKLWMVHTHSVIKLNQIEAYQLAFVHDE 192


>gi|229472213|gb|ACQ72621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 26/200 (13%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R  F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKI 66

Query: 794 SPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIE 847
               RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + + 
Sbjct: 67  GI-SRRLVKTVTYAFLYGAGDKKVGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVT 125

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             K+   ++GY+    GRR   D                A+N  +QGSA  + +  M+  
Sbjct: 126 AVKSKA-ESGYIRLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHT 172

Query: 908 HKSLEDHKLATKMLLQIHDE 927
           H  ++ +++    L  IHDE
Sbjct: 173 HNVIKLNQIEAYQLAFIHDE 192


>gi|229472259|gb|ACQ72644.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472389|gb|ACQ72709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472463|gb|ACQ72746.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472553|gb|ACQ72791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472573|gb|ACQ72801.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472587|gb|ACQ72808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472597|gb|ACQ72813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHN 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472261|gb|ACQ72645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472379|gb|ACQ72704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472605|gb|ACQ72817.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIKAYQLAFIHDE 192


>gi|167516798|ref|XP_001742740.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779364|gb|EDQ92978.1| predicted protein [Monosiga brevicollis MX1]
          Length = 632

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 31/206 (15%)

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           P +R   K + ++++YG+   RLA QL++   E    +  +  RFPG+ +  ++   ++ 
Sbjct: 421 PGLRERGKRVTYAVVYGVGAERLAAQLQLSVPETGQLVAEFLDRFPGVAQLRDRVDAYLH 480

Query: 855 QNGYVETIFGRRIHY--DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
           Q+GYVET+  RR +          S+ +  + RAA N  +QGSAADI + AM+++   L+
Sbjct: 481 QHGYVETLTMRRRYLSPPGTGGESSTTQARDSRAAFNFVMQGSAADICKAAMVTLQAHLD 540

Query: 913 DHKLATKMLLQIHDELV--------------------------FEVPEEEITTASQI-IV 945
            H++   ++LQ+HD++V                                E+    ++ ++
Sbjct: 541 KHEVEGGIVLQLHDQIVIGPSLAVKTIRPYHPDNPSNRSADNYVACSGSEVAQERELDMI 600

Query: 946 HSMEKACL--PKINLRVPLKVNIKVS 969
             M+      P  +LRVPL V I   
Sbjct: 601 EFMQTPAFREPLGSLRVPLDVRITTG 626



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 31/230 (13%)

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           +++   D+ + +++LDS      +  + Q +L                            
Sbjct: 220 NVKQVYDLAVAAFLLDSAVPPK-VDQVCQLYLPDRAP----------------------- 255

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           +    +++  LW  L+ +L   + L ++ERL+ P+  V+ +M++ G+ +    L    A 
Sbjct: 256 SASWPSLLNMLWRRLKAELEQRQQLTLFERLEVPLTPVLVRMQVLGVGVALPQLVATQAA 315

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTTAQDL 657
           +   L SL +    L+G+ FNL S +Q+ +ILFT L+     P    T +G+   T ++ 
Sbjct: 316 LQHCLQSLTQEAAILAGQSFNLDSAQQVANILFTHLQLGRNVPMLPMTASGKPS-TGEET 374

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707
            +     +P+   IL +RQL +  S Y + +   +++ T  VH  +    
Sbjct: 375 LRKLQSKHPLPGLILRYRQLKRCLSGYIEQVCPLVHEGT--VHPRWHQPG 422


>gi|229472577|gb|ACQ72803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + ++ M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKQWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472557|gb|ACQ72793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +++  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADRIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIKAYQLAFVHDE 192


>gi|229472221|gb|ACQ72625.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472277|gb|ACQ72653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472293|gb|ACQ72661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472375|gb|ACQ72702.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472445|gb|ACQ72737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472465|gb|ACQ72747.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472501|gb|ACQ72765.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472515|gb|ACQ72772.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472547|gb|ACQ72788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472579|gb|ACQ72804.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472373|gb|ACQ72701.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   Q+GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-QSGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 157 LQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|229472511|gb|ACQ72770.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472585|gb|ACQ72807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 157 LQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|229472357|gb|ACQ72693.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472227|gb|ACQ72628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          +E       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYEGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472231|gb|ACQ72630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 26/200 (13%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793
           R  F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHY------LARYDGGGYGDVLLNGDIHQENADKI 66

Query: 794 SPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIE 847
               RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + + 
Sbjct: 67  GI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVT 125

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
             K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  
Sbjct: 126 AVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHT 172

Query: 908 HKSLEDHKLATKMLLQIHDE 927
           H  ++ +++    L  +HDE
Sbjct: 173 HNVIKLNQIEAYQLAFVHDE 192


>gi|146081058|ref|XP_001464182.1| mitochondrial DNA polymerase I protein D [Leishmania infantum JPCM5]
          Length = 1073

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 140/364 (38%), Gaps = 66/364 (18%)

Query: 668  IKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               ILE R L K+  TY +S      + + ++     +H       T TGRLAS  PN Q
Sbjct: 703  ASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRLASANPNCQ 762

Query: 722  NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            NIP   +    +R  FIS    K   I ADYSQ+E+  LA +A    + +   N++D H 
Sbjct: 763  NIPK--EDKSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHC 820

Query: 780  ----------------MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823
                              A +I     E V  ++R+ AK  +F   YG     L+    +
Sbjct: 821  KRVTMMRPDLKYTDVLQRAKKI--KEPEFV--KLRQQAKIFSFQRQYGAGVRMLSQSTGL 876

Query: 824  PRSEAADYIKRYFHRFPGIHEY--------------IEKTKNFVRQNGYVETIF----GR 865
             + +    I++    + G+  +              ++     VR + + + +F    G 
Sbjct: 877  TQDQVRMLIEKENETYRGVEVFNKMVTLSANSYDASLQNGVRNVRGHQFFKGMFPVLTGS 936

Query: 866  RIHYDEINSPKSSIR---------NINERAAINAPIQGSAADITRRAMISVHKS-LEDHK 915
            R  + E + P+  +R         N +     N P+QG A +I +  +  + +  L ++ 
Sbjct: 937  RYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIVQVMLGVLWRHFLANNN 996

Query: 916  LATKMLL--QIHDELVFEVPEEEITTASQIIVHSME------KACLPKINLRVPLKVNIK 967
                 +L   +HD +  +         ++ +   M+       A  P++ + V    ++ 
Sbjct: 997  YNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIMDGARTVLNALYPEMQVTVDFPCDVV 1056

Query: 968  VSNN 971
               +
Sbjct: 1057 AGES 1060



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 29/202 (14%)

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMR-------GFEDIMLMSYVL--DSGRSSH--DIAS 507
           +E+ + +GHNIK+D L + R  +  R          D M   Y+L     +  H   +  
Sbjct: 40  DEYDVIVGHNIKFDMLHIWR-DVEFRKFLRRGGKIWDTMYGEYLLTGHEVKLGHGAGLED 98

Query: 508 IAQKWLSYTRKEILKSRKSSIPID--KISDSQVQEHA---IENSNVILQLWLLLRPKLIV 562
           +A+ +   T K     R  +   +  +I  S + E+    +EN+ +I      +   L  
Sbjct: 99  VAKSYGGQTMKLDAVKRAWAEGKETYEIPYSILTEYLHGDLENTELIFCKH--MERALEQ 156

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-- 620
            +++    R++   +   ++ME  G++ + DL ++ S E+   +  L   + +    +  
Sbjct: 157 RQVIICCARME--GLLCTTEMEYNGLKTNVDLAQRQSNELMTKVSELRRQLEESIPHEIP 214

Query: 621 ------FNLSSPKQLGDILFTK 636
                 FN SS + L    F  
Sbjct: 215 HDCRKFFNWSSNQHLITFFFGG 236


>gi|229472339|gb|ACQ72684.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          +E       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYEGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + ++ M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKQWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIKAYQLAFIHDE 192


>gi|229472257|gb|ACQ72643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LAHYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIKAYQLAFIHDE 192


>gi|229472471|gb|ACQ72750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P + +      + F + P   ++ AD + IELR+LAH          F+     
Sbjct: 1   PNLAQVPSEAEFR----KLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    R+  KT+ ++ +YG    ++             R++ A+ 
Sbjct: 51  DVLINGDIHQENADKIGI-SRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEAHQLAFVHDE 193


>gi|229472241|gb|ACQ72635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + ++ M+  H  ++ +++    L  IHDE
Sbjct: 157 LQGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|229472495|gb|ACQ72762.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT  ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTATYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIEAYQLAFIHDE 192


>gi|159046195|ref|YP_001541867.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
 gi|157913954|gb|ABV95386.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
          Length = 516

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 87/485 (17%), Positives = 176/485 (36%), Gaps = 77/485 (15%)

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           R  HD+ ++ +++ +   +E+  + K         +  V   A E    + +++L L  +
Sbjct: 89  REKHDVTAVLEQYGA--EQEVCSAYKRMFNKGLPFEPGVASKAAE---ALAKMYLALLER 143

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
             +      +  ++ P+  ++      GI +D+  L ++ AE   +              
Sbjct: 144 AKLTGEAERFLTVEVPVYRLLQSAMAVGIMVDRQRLSEMRAEAEHDY------------- 190

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI----IKNILEWR 675
                         FT LK  S       +    +   E++      +    I+ +LE+ 
Sbjct: 191 --------------FTCLKNYSAKHDMPLETPNRSALEEKLRADGFELDDVSIEYLLEYV 236

Query: 676 QLSKIKSTYADSLPNHINKR---------TQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
              +   +   +L      R         T  +     +  + T R+    P+LQN+  K
Sbjct: 237 PHQRDFGSDTIALQAADTARRVLGSLALSTTIMRPVLDVFGSRTSRIHLRSPSLQNMSKK 296

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786
                  R         +L   D+ Q E+ I+A ++K   L +++    D++ + A    
Sbjct: 297 ------YRGIIAGREGAELSYVDFDQYEVGIMAALSKDCELMKLYAAG-DMYDLFATTHL 349

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRL---ATQLRIPRSEAADYIKRYFHRFPGIH 843
           G++        R+ AK +  S  YG+S   L   A  L + R+ A       F  F    
Sbjct: 350 GLSGN------RKAAKQLFLSYAYGMSKKALIDAAVSLGVDRTRAK----NAFGLFAQYE 399

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            +        + NG V T+ G       +      +    +R++++  +QG+A+ I +RA
Sbjct: 400 TWKRSVWADFQANGRVATLLGNH----YLRERDGPLTAKEQRSSVSQVVQGTASLIFKRA 455

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           ++ V K          ++L +HD L+FE            +V + E A    +   V  K
Sbjct: 456 LLDVGKL-----DDVTIVLPMHDALLFE---HTSADTPNKVVTAFENAMTNTLGGGVRGK 507

Query: 964 VNIKV 968
            ++  
Sbjct: 508 ASVGA 512


>gi|229472365|gb|ACQ72697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   +I AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMIGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472247|gb|ACQ72638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P + +      + F + P   ++ AD + IELR+LAH          F+     
Sbjct: 1   PNLAQVPSEAEFR----KLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    R+  KT+ ++ +YG    ++             R++ A+ 
Sbjct: 51  DVLINGDIHQENADKIGI-SRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKRKARQYSYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358]
          Length = 653

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 98/673 (14%), Positives = 213/673 (31%), Gaps = 121/673 (17%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
                 I T +            +           ++ +        T  D    + +  
Sbjct: 3   KPLHIDIETFS----DVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPS 58

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMRGFEDIMLMSYVLDSGRSSH 503
           ++L  L+    +   +K+ HN +++++     L    +    +   M+    L   +S  
Sbjct: 59  KVLRALR----DPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLD 114

Query: 504 DI----------ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
            +              ++ + Y  K    ++ +      +      EHA E+       +
Sbjct: 115 GMGKALGLDVQKDKEGKRLIQYFSKPCKPTKANGGRTQNLP-----EHAPED-WEHYGKY 168

Query: 554 LLLRPKLI---VEKLLHVYERL--DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
             +  ++     +KL  +YE    +    +   ++   G+ +D   ++Q      K    
Sbjct: 169 NEIDVEVETGISDKLAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKR 228

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
               +  L+G + +++  +QL         +P  +  K  Q      +  +++     + 
Sbjct: 229 SSMKLRRLTGVE-SVTKVQQLKAW-AAAQGYPVESLDK--QHCEDYLNDPELHQDFPEVY 284

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--- 725
           + I  +++         D +   +              +  T R A     +QN+P    
Sbjct: 285 RMIELYQEAGGAAVAKYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYL 344

Query: 726 --------------------------KTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                                        + Q +R +   P   +   +DYS IE R++A
Sbjct: 345 KADKLEAARQIVAKGKTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVA 404

Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL-- 817
             A  + + + FE+  DI+   A++++ V  E+ +  MR+  K    ++ Y      L  
Sbjct: 405 WFAGESWVLKAFEDGEDIYVATASKMYHVTGEE-AEAMRQKGKQATLALGYQGGANALIV 463

Query: 818 --ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR-------QNGY---------- 858
             A +  IP  E  + ++ +    P I           R          Y          
Sbjct: 464 MGALRAGIPEEELPELVQLWRKANPNIVNLWHTVDKAARMAINNGGAKRYVLADGKLVIS 523

Query: 859 ---------VETIFGRRIHY------DEINSPKSSIRNINERAA--------INAPIQGS 895
                    V+   GR+++Y      D   S    +R    R              +Q +
Sbjct: 524 YKGDEHVLQVQLPSGRKLNYFDCKIRDNKISYLKGVRGDGSRFYADTYGGKLTENLVQAT 583

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955
           + D+   A++ +  +     + T  +  +HDE +  VPE    T  + I + M     P+
Sbjct: 584 SRDLLLAALMRIEAA----GIQT--VFHVHDETINIVPEG---TKIEEINNLMTSPA-PE 633

Query: 956 INLRVPLKVNIKV 968
               +PL     V
Sbjct: 634 WADGLPLDSEGDV 646


>gi|322830259|gb|EFZ33345.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
           cruzi]
          Length = 274

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 94/271 (34%), Gaps = 41/271 (15%)

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP--------- 795
           +I ADYSQ+E+ +LA +++ T + Q   + +D H +  + +     E V           
Sbjct: 1   MIEADYSQLEVVVLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYENVVRKAKQERDPH 60

Query: 796 --QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY----IEKT 849
             Q+R+ AKT +F   YG     +AT   +   E    I      +  +  Y    ++  
Sbjct: 61  YIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLISAEEQHYKDLSRYYRLVMDCV 120

Query: 850 KNFVRQNGYVETIF-------GRRIHY----------DEINSPKSSIRNINERAAINAPI 892
           +    +   + T+         RR+               +    +    +     N P+
Sbjct: 121 EAGADRLLRLRTLDAATWSPAMRRMILLTEPLHYFVVPTGSKFDFAKDKKSIPRLKNYPV 180

Query: 893 QGSAADITRRAMISVHKSLEDHK---LATKMLLQIHDELVFEVPEEEITTASQIIVHSM- 948
           QG A +I +     + +   + +       ++  +HD +  +            +   M 
Sbjct: 181 QGLAGEIVQIMCGKIVRRFYEKRNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMS 240

Query: 949 -----EKACLPKINLRVPLKVNIKVSNNWQE 974
                  +  P + L VP   ++ +  +  E
Sbjct: 241 STSKVMSSLWPDVKLDVPFNADVHIGPSLGE 271


>gi|322497562|emb|CBZ32636.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1579

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 138/362 (38%), Gaps = 62/362 (17%)

Query: 668  IKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
               ILE R L K+  TY +S      + + ++     +H       T TGRLAS  PN Q
Sbjct: 1209 ASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRLASANPNCQ 1268

Query: 722  NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            NIP   +    +R  FIS    K   I ADYSQ+E+  LA +A    + +   N++D H 
Sbjct: 1269 NIPK--EDKSSLRDMFISRFGDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHC 1326

Query: 780  MVAAEIFG--------------VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825
                 +                   E V  ++R+ AK  +F   YG     L+    + +
Sbjct: 1327 KRVTMMRPDLKYTDVLQRSKKIKEPEFV--KLRQQAKIFSFQRQYGAGVRMLSQSTGLTQ 1384

Query: 826  SEAADYIKRYFHRFPGIHEY--------------IEKTKNFVRQNGYVETIF----GRRI 867
             +    I++    + G+  +              ++     VR + + + +F    G R 
Sbjct: 1385 DQVRMLIEKENETYRGVEVFNKMVTLSANSYDASLQNGVRNVRGHQFFKGMFPVLTGSRY 1444

Query: 868  HYDEINSPKSSIR---------NINERAAINAPIQGSAADITRRAMISVHKS-LEDHKLA 917
             + E + P+  +R         N +     N P+QG A +I +  +  + +  L ++   
Sbjct: 1445 VFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIVQVMLGVLWRHFLANNNYN 1504

Query: 918  TKMLL--QIHDELVFEVPEEEITTASQIIVHSME------KACLPKINLRVPLKVNIKVS 969
               +L   +HD +  +         ++ +   M+       A  P++ + V    ++   
Sbjct: 1505 GLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIMDGARTVLNALYPEMQVTVDFPCDVVAG 1564

Query: 970  NN 971
             +
Sbjct: 1565 ES 1566



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 29/202 (14%)

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMR-------GFEDIMLMSYVL--DSGRSSH--DIAS 507
           +E+ + +GHNIK+D L + R  +  R          D M   Y+L     +  H   +  
Sbjct: 546 DEYDVIVGHNIKFDMLHIWR-DVEFRKFLRRGGKIWDTMYGEYLLTGHEVKLGHGAGLED 604

Query: 508 IAQKWLSYTRKEILKSRKSSIPID--KISDSQVQEHA---IENSNVILQLWLLLRPKLIV 562
           +A+ +   T K     R  +   +  +I  S + E+    +EN+ +I      +   L  
Sbjct: 605 VAKSYGGQTMKLDAVKRAWAEGKETYEIPYSILTEYLHGDLENTELIFCKH--MERALEQ 662

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-- 620
            +++    R++   +   ++ME  G++ + DL ++ S E+   +  L   + +    +  
Sbjct: 663 RQVIICCARME--GLLCTTEMEYNGLKTNVDLAQRQSNELMTKVSELRRQLEESIPHEIP 720

Query: 621 ------FNLSSPKQLGDILFTK 636
                 FN SS + L    F  
Sbjct: 721 HDCRKFFNWSSNQHLITFFFGG 742


>gi|262212351|gb|ACY35792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|229472243|gb|ACQ72636.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472435|gb|ACQ72732.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472469|gb|ACQ72749.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472473|gb|ACQ72751.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472481|gb|ACQ72755.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472489|gb|ACQ72759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472497|gb|ACQ72763.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472575|gb|ACQ72802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIEAYQLAFIHDE 192


>gi|229472533|gb|ACQ72781.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSEA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIEAYQLAFIHDE 192


>gi|229472439|gb|ACQ72734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++P  +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLPEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIEAYQLAFIHDE 192


>gi|229472383|gb|ACQ72706.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P + +      + F + P   ++ AD + IELR+LAH          F+     
Sbjct: 1   PNLAQVPSEAEFR----KLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +KV    R+  KT+ ++ +YG    ++             R++ A+ 
Sbjct: 51  DVLINGDIHQENADKVGI-SRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 PQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|229472363|gb|ACQ72696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIEAYQLAFIHDE 192


>gi|262212405|gb|ACY35819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQVNADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|229472229|gb|ACQ72629.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472329|gb|ACQ72679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P + +      + F + P   ++ AD + IELR+LAH          F+     
Sbjct: 1   PNLAQVPSEAEFR----KLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    R+  KT+ ++ +YG    ++             R++ A+ 
Sbjct: 51  DVLINGDIHQENADKIGI-SRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|229472593|gb|ACQ72811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 26/202 (12%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           + R+ F + P   ++ AD + IELR+LAH          ++       ++  +I   N +
Sbjct: 9   EFRKLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENAD 62

Query: 792 KVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEY 845
           K+    RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + 
Sbjct: 63  KIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKL 121

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +   K+   ++GY++   GRR   D                A+N  +QGSA  + ++ M+
Sbjct: 122 VTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKQWMV 168

Query: 906 SVHKSLEDHKLATKMLLQIHDE 927
             H ++  +++    L  +HDE
Sbjct: 169 HTHNAINLNQIEAYQLAFVHDE 190


>gi|229472541|gb|ACQ72785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -GRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472453|gb|ACQ72741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDAATKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIEAYQLAFIHDE 192


>gi|229472377|gb|ACQ72703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIG-MSRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKDKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +  M+  H  ++ +++    L  IHDE
Sbjct: 157 LQGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|48697101|ref|YP_024759.1| DNA polymerase I [Pseudomonas phage PaP2]
 gi|46369536|gb|AAS89617.1| p31 [Pseudomonas phage PaP2]
          Length = 801

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 113/723 (15%), Positives = 227/723 (31%), Gaps = 92/723 (12%)

Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN--NDSYTKIVNTKDIQ 378
            R + I T   S + D+ S +      + L  + L+K+    +      YT + +T+   
Sbjct: 75  WRGSRIDTKIPSIVIDKISNVYQTNEGEWLLQKDLKKIRYCRVPGVKFDYTVLTDTRLFS 134

Query: 379 QWVQKLETIGSASFKIITD------------TMDAFHSKPIAIAISTLDQKDDTSF---- 422
             +  L         I T               D    +   +  + +     +      
Sbjct: 135 AALDILGQSLIIGGDIETQQWQVKRGTKKVPCYDPATLQINGLGETWITVVSFSGLMPDG 194

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
           K++T  + L V+   D    +      L +L+    +    K  HN  YD   L RY  +
Sbjct: 195 KIKTFVLPL-VNGMNDFWKTDEEYAAALLFLQMVMRS-DIPKCFHNGLYDSFHLMRYHAA 252

Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
                 D M +S+   S   S D+  +   WL Y  KE     K     +  +   ++ +
Sbjct: 253 PNNWIFDTMGLSHSWYS-ELSKDVGFLCS-WLLYDHKEW----KYMADREHKAIGGIESY 306

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHV-YERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
               +     +   L   L       +   +   P++         G +++ +   ++  
Sbjct: 307 WKYAAYDTHMMMRALIELLKNGDTWMLRNYKKQFPLVYPSLYGAFEGFRVNNETRLKLVE 366

Query: 601 EISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659
           +  + L S  +++  ++ + +FN  SP Q+ + L+  L      + K      T +    
Sbjct: 367 KAEERLESALKDLRIMTDDPEFNPGSPDQVSEFLYEVLGAKRPPRAK--SKSKTDKKSRA 424

Query: 660 INCGDNPIIKNILE----WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                +PI     +    +    K  STY             R+        T TGR AS
Sbjct: 425 FVASQHPIFALFSDRVNNYSLEKKALSTYFSFRQ-----WNSRLLYSLDPFGTDTGRFAS 479

Query: 716 LEPNLQNIPIKTDLGQKIRRA---FISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                    I T +  +   A   +           D+S+ E    A++++ + L +   
Sbjct: 480 RASAA---WIGTQIQNQPVYAKEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKALC 536

Query: 773 --------NSLDIHRMVAAEIFGVNIEKVSPQMRRHA-KTINFSIIYGISPFRLATQLR- 822
                   N  D ++++    F +  E V+ + R    K I     Y + P      L  
Sbjct: 537 FPDLDNEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLDD 596

Query: 823 -------------------------IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
                                     P+  A   +  Y   FP + ++ E     V    
Sbjct: 597 IQTLFLAAKILGVVLTLNPKAPKEKTPKDFAKQLLDAYHIPFPEVQQWWESIFMEVLTTN 656

Query: 858 YV--ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
            +        R  + +    K   R      + N  +     D      +  ++ +   +
Sbjct: 657 KLINPITGHVRYFFGDPRRNKKIQRQAVAHQSQNFSV-----DNLNTGYLKAYQYMLSLE 711

Query: 916 LATKMLL--QIHDELVFEVPEEEITTASQIIVHSME-KACLPKINLRVPLKVNIKVSNNW 972
               + L  QIHD LV +V          ++   +  +  +    + + ++V      NW
Sbjct: 712 DPRILRLKTQIHDSLVGQVLVGYARQVIPVLKELLTPRVIVHGQEMVINVEVECFH-TNW 770

Query: 973 QEE 975
           +++
Sbjct: 771 KDK 773


>gi|33322741|gb|AAQ07105.1|AF496417_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 101

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/101 (42%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 720 LQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           LQNIP +T+ G++IR+AF+   P   + S DYSQIELR+LAH++    + + F+   DIH
Sbjct: 1   LQNIPTRTEEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIH 60

Query: 779 RMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLA 818
              A +IF + ++++V+    R AK +NF I+YGIS   L+
Sbjct: 61  AHTAMKIFHLSSVDEVTSLQXRRAKAVNFGIVYGISDXGLS 101


>gi|229472343|gb|ACQ72686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472583|gb|ACQ72806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIEAYQLAFIHDE 192


>gi|213581474|ref|ZP_03363300.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 86

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 4/89 (4%)

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           INAP+QG+AADI +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   
Sbjct: 2   INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQL 61

Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ME        + VPL V +    NW + +
Sbjct: 62  MENCT----RIDVPLLVEVGSGENWDQAH 86


>gi|229472527|gb|ACQ72778.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFRATPGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY++   GRR   D                A+N  
Sbjct: 110 RQAYMDAIPGLEKLVTAVKSKA-ESGYIQLCDGRRCPVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + ++ M+  H  ++ +++    L  IHDE
Sbjct: 157 LQGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|294085087|ref|YP_003551847.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664662|gb|ADE39763.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 418

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 147/387 (37%), Gaps = 47/387 (12%)

Query: 577 IDVVSQMEITGIQIDQDLLKQVSA---EISKNLLSLEENIYDL-SGEKFNLSSPKQLGDI 632
           +  V+ ME  G+ ID   L  +     +  + L+   +  Y +     F +         
Sbjct: 22  VATVALMEHRGVPIDTTTLGLMRDNWHDFKQALIEKTDQAYGVYDKGSFRVH-------- 73

Query: 633 LFTKL---KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL- 688
           LF      +  +  +  +G+ +   +D  ++    +P      +  +L +++ T A+   
Sbjct: 74  LFEHYLGAENIAWPRLASGELQLD-RDTFKMMALRHP------QLAELRELRKTLAEMRE 126

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
                 R  R  T  S  ++ TGR                L    R      P   L   
Sbjct: 127 IKLTVGRDGRNRTLLSPFNSKTGRNQPSTTKFI-----FGLPAWARSLIKPEPGTALAYL 181

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ----MRRHAKTI 804
           D+S  E+ I A ++    L+Q + +  D +   A +  G+     + +     R   K I
Sbjct: 182 DFSSQEIAIAACLSGDDALWQAYASG-DPYIQFAIDA-GLAPVGATKESHKAERDACKVI 239

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
              + YG+S + +  +  +   EA D ++R+   +     + E+  N       + T+FG
Sbjct: 240 MLGVQYGMSAYGMGQKASLHVLEAEDLLQRHKDVYLTFWRWAERNVNAGLAGVELHTVFG 299

Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924
            +I            R++ E   +N P+Q + A++ R A I    +LE+  +   M   +
Sbjct: 300 WKI-------RAGKGRDVKENTFLNWPMQANGAEMLRLAYI----ALEEESIV--MCAPV 346

Query: 925 HDELVFEVPEEEITTASQIIVHSMEKA 951
           HD ++ E P + I    +   H M+KA
Sbjct: 347 HDAILIEAPLDAIDQHVERATHEMQKA 373


>gi|229472271|gb|ACQ72650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHN 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIKAYQLAFIHDE 192


>gi|229472269|gb|ACQ72649.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 IIKLNQIEAYQLAFIHDE 192


>gi|229472611|gb|ACQ72820.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTEGKEIRQAYMDAIPGLEKRVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++ T  L  IHDE
Sbjct: 175 VIKLNQIKTYQLAFIHDE 192


>gi|229472467|gb|ACQ72748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QG A  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGCAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472569|gb|ACQ72799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      R F + P ++++ AD S +ELR LAH          ++     
Sbjct: 1   PNLAQVPSDPEFR----RLFRASPGQRMVGADLSGVELRCLAHY------LAGYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             +++  + 
Sbjct: 51  EILLNDDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDQKIGLSYDKSLSPNKAKAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + ++  K    + GYV  I  R++  D            +   A+N  
Sbjct: 110 RQAYIDAIDGLDKLLKDIK-QASERGYVRAIDKRKVLVD------------SSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q +AA + +R M+   +++++ KL    L  IHDE
Sbjct: 157 LQSTAAVLAKRWMVINDQTIKETKLCCSQLAFIHDE 192


>gi|229472441|gb|ACQ72735.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +  Q     F + P   ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFRQ----LFTATPGLVMVGADLAGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  DILLNGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGRSYDPQLAEKEAKRKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   + GY+    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVSAVKSKA-ECGYINLCDGRRCSVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  I +R M   H+S+    +  K L  +HDE
Sbjct: 157 LQGSAGVIAKRWMALTHESIYRSNIEAKQLAFVHDE 192


>gi|229472251|gb|ACQ72640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P + +      + F + P   ++ AD + IELR+LAH          F+     
Sbjct: 1   PNLAQVPNEAEFR----KLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    R+  KT+ ++ +YG    ++             R++ A+ 
Sbjct: 51  DVLINGDIHQENADKIGI-SRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|229472273|gb|ACQ72651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  117 bits (294), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472225|gb|ACQ72627.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472385|gb|ACQ72707.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  117 bits (294), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P + +      + F + P   ++ AD + IELR+LAH          F+     
Sbjct: 1   PNLAQVPSEAEFR----KLFTATPGMVMVGADLAGIELRMLAHY------LARFDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    R+  KT+ ++ +YG    ++             R++ A+ 
Sbjct: 51  DVLINGDIHQENADKIGI-SRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYSYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|229472245|gb|ACQ72637.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  117 bits (294), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATDKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|262342295|gb|ACY54658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  117 bits (294), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                 +N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKVLNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|229472433|gb|ACQ72731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F   P + ++ AD S IELR+LAH          +++    
Sbjct: 1   PNLAQVPSDG----RFRELFKPTPGQVMVGADLSGIELRMLAHY------LARYDSGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA------DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++   L    S+        + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKQVKTVTYAFLYGAGDVKIGKSLDSSLSDKKAKAKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            K Y     G+ + +   K+     G+V+ I  R+I  D            +   A+N  
Sbjct: 110 RKAYVSAIDGLGDLLAAVKS-AGDRGFVKAIDQRKILVD------------SSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSAA + +R M+   +++E  KL    L  +HDE
Sbjct: 157 LQGSAAVLAKRWMLINQQTIEQTKLCCSQLAFVHDE 192


>gi|262342269|gb|ACY54645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342289|gb|ACY54655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342317|gb|ACY54669.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342319|gb|ACY54670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342323|gb|ACY54672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342325|gb|ACY54673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|125999975|ref|YP_001039646.1| DNA polymerase A domain-like protein [Erwinia amylovora phage
           Era103]
 gi|121621831|gb|ABM63405.1| DNA polymerase A domain-like protein [Enterobacteria phage Era103]
          Length = 833

 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 115/345 (33%), Gaps = 76/345 (22%)

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
            P+       RV        T T R+      L NIP +      +R  FI+   KK++ 
Sbjct: 509 WPSLPEDGEWRVPAIAISIGTSTFRMRHRV--LVNIPSRG--LYPLRDLFIASKGKKVLG 564

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807
            D + +ELR+LAH        +V  +  DIH          N EK    +R  AKT  ++
Sbjct: 565 CDGAGLELRVLAHFMNDPEYSEVVLHG-DIHT--------HNQEKAGLPLRDMAKTFIYA 615

Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867
            +YG     LA    +   E      R+    P +   +   +    + GY++   G   
Sbjct: 616 FLYGSGDDNLAAVCGVSVKEMKAIRARFMAELPQLARLMAAVQASGNEYGYLQAPDG--- 672

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA------TKML 921
           H+  I      +    E   +N  +Q + +   + A++     ++   +          L
Sbjct: 673 HWGRIRKKDGKL---LEHTMLNVLLQMTGSLCMKYALVRAVMVMKQEGVGLDENGHPAFL 729

Query: 922 LQIHDELVFEVPEEEITTAS---------------------------------------- 941
             IHDE+  EV  +E+   +                                        
Sbjct: 730 ANIHDEMQMEVNADEVLETTYDLASSDWKEEEKKAYIDVDGRMWSAPEIIEGNPKTDPSI 789

Query: 942 ----------QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                     QII  +M  A    + +R+ +    K+ ++W + +
Sbjct: 790 KVRRQYHRCGQIIAEAMTWAG-EYLKMRIRMDGEFKIGDSWGQTH 833


>gi|262342279|gb|ACY54650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
            NL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   SNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|229472589|gb|ACQ72809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHN 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIEAYQLAFIHDE 192


>gi|262212385|gb|ACY35809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRITCD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|229472371|gb|ACQ72700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEVRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + ++ M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKQWMVHTHN 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|229472355|gb|ACQ72692.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 84/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GR    D                A+N  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRCCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  IHDE
Sbjct: 175 VIKLNQIEAYQLAFIHDE 192


>gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 356

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 122/358 (34%), Gaps = 85/358 (23%)

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--------------- 724
           +      ++ N      +    F    +  TGR A     LQN+P               
Sbjct: 2   LGKQKYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVR 61

Query: 725 -------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
                        I   L Q IR AFI+ P  K   AD+S IE R++AH+A  +    VF
Sbjct: 62  IGDYDSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVF 121

Query: 772 ENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIPR 825
           +N  DI+   A+++F V +EK  ++  +R+  K    ++ YG S   L    A ++ +  
Sbjct: 122 KNGGDIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALEMGLTE 181

Query: 826 SEAADYIKRYFHRFPGIHEYIEK----TKNFVRQN-----------------------GY 858
            E    +  +    P I           KN ++ +                       G 
Sbjct: 182 DELQPLVDAWRQSNPNIVALWWDFDTAIKNAIKMHCSTASHGIKFTWRSGMLLITLPSGR 241

Query: 859 VETIFGRRI----------HYDEINSPKSSIR-NINERAAINAPIQGSAADITRRAMISV 907
             T    RI           Y+ I + K   R  I     +   +Q  + D+   AM ++
Sbjct: 242 KLTYVKPRIGENKFGGESVTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMKTL 301

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
                       +   +HDEL+ E  E+        +   M  A  P     + L+ +
Sbjct: 302 S--------HCFICGHVHDELIIECSEKVSLEV---LCQQM--ARTPDWMPDILLRAD 346


>gi|262212387|gb|ACY35810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEADQLAFVHDE 193


>gi|229472537|gb|ACQ72783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 26/195 (13%)

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+    R
Sbjct: 18  ASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI-SR 70

Query: 799 RHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKTKNF 852
           R  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   K+ 
Sbjct: 71  RLVKTVTYAFLYGAGNKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAVKSK 130

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
             ++GY++   GRR   D                A+N  +QGSA  + +  M+  H  ++
Sbjct: 131 A-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHDVIK 177

Query: 913 DHKLATKMLLQIHDE 927
            +++    L  +HDE
Sbjct: 178 LNQIEAYQLAFVHDE 192


>gi|229472391|gb|ACQ72710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 26/197 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A+N  +QGSA  + ++ M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKQWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHD 926
            ++ +++    L  +HD
Sbjct: 175 VIKLNQIEAYQLAFVHD 191


>gi|262342311|gb|ACY54666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             +++ +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLSGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  +HDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|158315552|ref|YP_001508060.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
 gi|158110957|gb|ABW13154.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
          Length = 673

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 127/331 (38%), Gaps = 50/331 (15%)

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           +P+++ +L WR+  +I +TY     +       R+   +  +    GR+ +    L N+P
Sbjct: 371 HPVVEALLAWRKAERIATTYGYRWLDTHVGADGRLRGEWRGSDGAAGRMTAA-AGLHNLP 429

Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784
                   +R   I+ P  + + AD  QIE R+LA ++    L +      D++  VAA 
Sbjct: 430 AD------LRVVVIAEPGYRFVRADLGQIEPRVLAVVSGDPELTRATRQD-DLYAPVAAS 482

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           + GV+        R  AK    + +YG                A   +++    +P    
Sbjct: 483 L-GVD--------RPTAKVAVLAAMYGQ-----------TTGVAGQALRQMRETYPVALA 522

Query: 845 YIEKTKNFVRQ---------------NGYVETIFGRRIHYDEINSPKSSIRNI----NER 885
           Y++      R                   + T  GRR+          +  N       R
Sbjct: 523 YLDAADATGRAAALGRPPPNPPVTDPQARLRTFGGRRVPLRFAAVDDGADENRVGMTWGR 582

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            A NA +QG+AA++ +   ++V +++    L   ++L +HDEL+  VP      A++   
Sbjct: 583 FARNAVVQGAAAELFKAWAVTVRQAI--APLGGAIVLCLHDELLLHVPAPRAEAAAEATR 640

Query: 946 HSMEKACLPKINLR-VPLKVNIKVSNNWQEE 975
            +++           V   V+I V   W + 
Sbjct: 641 RALDATVGYWAAGSGVRFVVDIAVVRRWSDA 671


>gi|262212383|gb|ACY35808.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                 +N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKVLNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|229472361|gb|ACQ72695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 26/195 (13%)

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
           + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+    R
Sbjct: 18  ASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI-SR 70

Query: 799 RHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKTKNF 852
           R  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   ++ 
Sbjct: 71  RLVKTVTYAFLYGAGDEKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAVRSK 130

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
             ++GY++   GRR   D                A+N  +QGSA  + +  M+  H  ++
Sbjct: 131 A-ESGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHDVIK 177

Query: 913 DHKLATKMLLQIHDE 927
            +++    L  +HDE
Sbjct: 178 LNQIEAYQLAFVHDE 192


>gi|262212403|gb|ACY35818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVAYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIGANQLAFIHDE 193


>gi|229472179|gb|ACQ72604.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795
            F + P   ++ AD + IELR+LAH          ++       ++  +I   N +K+  
Sbjct: 15  LFTASPGYAMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI 68

Query: 796 QMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKT 849
             RR  KT+ ++ +YG       L+   ++   +A     +  + Y    PG+ + +   
Sbjct: 69  -SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSEKDATTKGKEIRQAYMDAIPGLEKLVTAV 127

Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
           K+   ++GY++   GRR   D                A++  +QGSA  + +  M+  H 
Sbjct: 128 KSKA-ESGYIQLCDGRRCPVD------------GSHKALSYLLQGSAGCVAKLWMVHTHD 174

Query: 910 SLEDHKLATKMLLQIHDE 927
            ++ +++    L  +HDE
Sbjct: 175 VIKLNQIEAYQLAFVHDE 192


>gi|329114048|ref|ZP_08242812.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696587|gb|EGE48264.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 542

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 164/441 (37%), Gaps = 64/441 (14%)

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            E   + +  I  ++L L  +      L  +  ++ P   ++      GI ID   L + 
Sbjct: 130 AEVVCKAATAIEAMYLKLCEQASANGELERFFTVEVPAYRLLQLSMSAGISIDTIGLSEK 189

Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
            ++   +        Y L+ + ++               K     +T + +   +   LE
Sbjct: 190 RSQAEHD--------YFLALKAYS--------------AKHDMPLETPSRRALESKLVLE 227

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR---------TQRVHTFYSLASTM 709
                +  I + +LE+    +       +L      R         T        +  + 
Sbjct: 228 GFELDEVSI-EYLLEFVPHDRDFGGDTMALLALDVTRRVLGSLTLATNITRPVVDVFGSR 286

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           T R+    P+LQNIP +       R    +    KL   D+ Q E+ I+A ++    L +
Sbjct: 287 TSRVQLRSPSLQNIPKR------YRSIISARTGAKLCYVDFDQFEVGIMAALSGDEELKR 340

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL---ATQLRIPRS 826
           ++    D++ + A    G+         R+ AK +  S  YG+S   L   A  L + R 
Sbjct: 341 LYAAG-DMYDLFANTHLGLV------NNRKAAKQLFLSYAYGMSRKALIDAAYSLGVERQ 393

Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886
           +A +     F  F    ++        +  G V T+ G   HY  I   K  +    +R+
Sbjct: 394 KAKEA----FRLFQRYEDWKRSIWAEFQGTGRVATVLGN--HYRRIG--KGQLSGKEQRS 445

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946
           A++  +QG+A+ I +RA+++V           K++L +HD L+FE     +      +V 
Sbjct: 446 AVSQVVQGTASLIFKRALLAVASI-----DDVKVVLPMHDALLFE---HRLAGTPDKVVR 497

Query: 947 SMEKACLPKINLRVPLKVNIK 967
           + E      +N  V  K +I 
Sbjct: 498 AFETVMTEVLNSIVSGKASIS 518


>gi|262212371|gb|ACY35802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K +   RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADK-TGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|77407374|ref|ZP_00784270.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77174018|gb|EAO76991.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 91

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 4/94 (4%)

Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           + ER AIN+PIQGSAADI + AMI++ + L+     +KMLLQ+HDE+V EVP EEI    
Sbjct: 1   MAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIR 60

Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           +++  +ME A    I+L VPL  +      W E 
Sbjct: 61  ELVTKTMESA----ISLSVPLIADENAGETWYEA 90


>gi|262212363|gb|ACY35798.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212401|gb|ACY35817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212413|gb|ACY35823.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212415|gb|ACY35824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342105|gb|ACY54563.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342275|gb|ACY54648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342277|gb|ACY54649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342281|gb|ACY54651.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342287|gb|ACY54654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342291|gb|ACY54656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342293|gb|ACY54657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342297|gb|ACY54659.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342301|gb|ACY54661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342307|gb|ACY54664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262342099|gb|ACY54560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RRAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262212377|gb|ACY35805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +        F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----ELFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262342123|gb|ACY54572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M    +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMQLTDESLRQGSIEANQLAFIHDE 193


>gi|229604938|ref|YP_002875638.1| putative DNA polymerase [Vibrio phage VP93]
 gi|227976983|gb|ACP44085.1| putative DNA polymerase [Vibrio phage VP93]
          Length = 811

 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 135/429 (31%), Gaps = 83/429 (19%)

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTA--QDLEQINCGDNPIIKNILEWRQLSKIKST 683
           P+   D    + +F        G    ++    +  +         +I     L K   T
Sbjct: 375 PEHFQDKFGERGEFRQNRNLCDGSPVFSSSGDCMAGLAKQGFTFASDISRLATLEKDTGT 434

Query: 684 YA---------------DSLPNHINKRTQR---VHTFYSLASTMTGRLASLEPNLQNIPI 725
           Y                  L   I ++      +H   +  +T+TGRL++  PNLQN+P 
Sbjct: 435 YYLRHEYDDEGNITKSSGMLQYVIPEKPDGSGIIHHRLNTCATVTGRLSASNPNLQNLPR 494

Query: 726 KTDLGQ-----KIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
             +        +++  F S   +  ++I  DYS +E+ +         L ++ +   D+H
Sbjct: 495 AEEDKDGNAKSRVKEMFTSRFGEDGRIIEVDYSALEVVMGVVHTGDMKLLELLKAGTDMH 554

Query: 779 RMVAAEIFGVNIEKVS--------------PQMRRHAKTINFSIIYGISPFRLATQLRIP 824
               A    ++ E+V                 MR   K  +F+  YG S   +A      
Sbjct: 555 CYRLAFQENLDYEEVYRRCHDEGFEFHALWKSMRTAIKAPSFAAQYGASAAGIAFATGCT 614

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD---------EINSP 875
              A  ++      FP   ++ +  ++ V + G +     R +  D            SP
Sbjct: 615 VEFAQAFLDNEAALFPDTAKFRQVIRDEVERTGNLPGNLKREMTDDGSVRLYRRGYWTSP 674

Query: 876 KSSIRNINE---------------------RAAINAPIQGSAADITRRAMISVHKSLEDH 914
                +  +                         N   QG A  +   A   + + +   
Sbjct: 675 AGMRYSFRQVERWVKRADGRGMEKVMDYKDTQLANYWCQGEAFFLMAVAFGMILRHMIAK 734

Query: 915 KL---ATKMLLQIHDELVFEVPEEEITTASQI-IVHSMEKACLPKINL--------RVPL 962
                   ++  +HD    +   EE+   + + +   ME+A    + L         VP 
Sbjct: 735 NWYDNQVCLITNVHDAAYLDAANEEVGREAALAVKDIMERAKDRILQLWPNYGHLKDVPF 794

Query: 963 KVNIKVSNN 971
               ++ ++
Sbjct: 795 PAAAEMGSS 803


>gi|302544332|ref|ZP_07296674.1| putative DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302461950|gb|EFL25043.1| putative DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 241

 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 87/249 (34%), Gaps = 41/249 (16%)

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
           ++ P  +L+ AD  Q+E R+LA I++   L +V     D++  ++   F           
Sbjct: 1   VADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGTGRDLYAELSDRAFAG--------R 52

Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
           R  AK      +YG               +   ++     RFP    Y++       +  
Sbjct: 53  RDQAKLALLGAVYGQ-----------TSGDGLKHLAALRRRFPAAVAYVDDAARAGEEGR 101

Query: 858 YVETIFGRRIHYDEINSPKSSIRN-------------------INERAAINAPIQGSAAD 898
            V T  GR        +   +                         R   N  +QGSAAD
Sbjct: 102 LVRTWLGRTCPPAGGAATDPADEAGLPRDLDEEPRYGSTPSARARGRFTRNFVVQGSAAD 161

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA---CLPK 955
                + ++ ++L    L  +++   HDE++   PE E+    Q I  + E A       
Sbjct: 162 WAVLMLAALRRALAAAGLRAELVFFQHDEVIVHCPEPEVAAVRQAIAEAGEVAGTIAFGT 221

Query: 956 INLRVPLKV 964
             +R PL V
Sbjct: 222 TPVRFPLTV 230


>gi|262342271|gb|ACY54646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEV 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262212399|gb|ACY35816.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342299|gb|ACY54660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVVAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262212367|gb|ACY35800.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212379|gb|ACY35806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT  ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTATYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|229472477|gb|ACQ72753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P ++++ AD S +ELR LAH          ++     
Sbjct: 1   PNLAQVPSDPEFR----KLFRASPGQRMVGADLSGVELRCLAHY------LARYDEGRYR 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             +++  + 
Sbjct: 51  EVLLNDDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDQKIGLSYDKSLSPNKAKAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + ++  K    + GYV  I  R++  D            +   A+N  
Sbjct: 110 RQAYIDAIDGLDKLLKDIK-QASERGYVRAIDKRKVLVD------------SSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q +AA + +R M+   +++++ KL    L  IHDE
Sbjct: 157 LQSTAAVLAKRWMVINDQTIKETKLCCSQLAFIHDE 192


>gi|262342283|gb|ACY54652.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQVYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262212409|gb|ACY35821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      R F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----RLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  DVLLHGDIHQENADKIGI-SRRAVKTVTYAFLYGAGDAKLGKSYDAQLTESQTKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGFINLCGGRRCSVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           IQGSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 157 IQGSAGVLAKRWLLINHDNTRE--LCCSQLAFIHDE 190


>gi|71735368|ref|YP_276338.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555921|gb|AAZ35132.1| DNA polymerase I domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 512

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 144/417 (34%), Gaps = 42/417 (10%)

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
            +L     L            + ++++P+ + +      GI ID   L+     I  +  
Sbjct: 130 AMLNQSSKLEADAKENNEWERFTKIERPVAEYLISSAAAGIAIDSARLRVHKENIEFDYY 189

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
              +           L S   +   L   L +                 +      ++  
Sbjct: 190 MALKKFSAEYNLPLELPSNDDIVHRL-EPLGYDFSG--------VDVDYVLNFVPMNDNF 240

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
             ++L  R+++K ++       N I    +R+        ++T R+   +P+LQN     
Sbjct: 241 AIDLLNLRKIAKSRNV-----LNAIPLSQKRIFPIVDCFGSITSRIYFKDPSLQN----- 290

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
            L +  R   I    K     DY Q E  I+A ++    L  ++ +  D+++ VA+ IF 
Sbjct: 291 -LAKHHRNILIPDDGKVFSYVDYEQYEAGIMAALSNDETLLTLYADG-DLYKQVASGIFQ 348

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
                   + R+ AK +  S  YG+    L               K +F RF    ++  
Sbjct: 349 ------DEERRKEAKRLFLSYAYGMKNRHLI-DAAFGYGADRRLTKDFFKRFETFEKWKI 401

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                   +  + T  G  +           +    +R+A++  +QG+A+ I ++++I +
Sbjct: 402 SVHALFETDQRIGTALGNHLR----RDGAGPLTEKEKRSAVSQLVQGTASLIFKKSLIKL 457

Query: 908 HKSLEDHKLATKMLLQIHDELVFEV-----PEEEITTASQIIVHSMEKACLPKINLR 959
            +          + + +HD ++FE      P       ++ +    E     K +L 
Sbjct: 458 RQE-----PGVSLKVPMHDAILFEHSHDFDPRLVADVFARTMTEHFEGKITGKASLS 509


>gi|262212357|gb|ACY35795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
            NL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   SNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVVAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262342309|gb|ACY54665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 26/204 (12%)

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           G + R  FI  P + ++ AD + IELR+L+H           +N      ++  +I  VN
Sbjct: 9   GHRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARCDNGRYADILLNGDIHQVN 62

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIH 843
            +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ 
Sbjct: 63  ADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLD 121

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           + +E  K    + G+++ + GR+I  D            +   A+N  +QG++A + +R 
Sbjct: 122 KLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYCLQGNSAILAKRW 168

Query: 904 MISVHKSLEDHKLATKMLLQIHDE 927
           M+    +L+   L    L  IHDE
Sbjct: 169 MVINQNNLKLSNLCCSQLAFIHDE 192


>gi|262212359|gb|ACY35796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVAYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262342093|gb|ACY54557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDANFR----KLFTATPGQVMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  SILLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDSKLGRSYDPQLSEQQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY+     RR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDSRRCTVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  I +R M+  + + ++  L    L  IHDE
Sbjct: 157 LQGSAGVIAKRWMLINYTNTKE--LCCSQLAFIHDE 190


>gi|328479628|gb|EGF48818.1| DNA polymerase I [Lactobacillus rhamnosus MTCC 5462]
          Length = 94

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 8   FLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
            L+DG+S  +RAF+A           DGL  NAI  F NML  +L++ + ++      V 
Sbjct: 1   MLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDA----ALVA 56

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102
           FD    TFR   Y DYK+ R K P  LL QLP ++   
Sbjct: 57  FDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELL 94


>gi|229472603|gb|ACQ72816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      R F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----RLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             +    + 
Sbjct: 51  DVLLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGKSYDAQLSEQQAKKRGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY+    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDGRRCSVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  +++  +  L    L  +HDE
Sbjct: 157 LQGSAGILAKRWLLINYENTRE--LCCSQLAFVHDE 190


>gi|151505397|gb|ABG29153.2| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|151505399|gb|ABG29157.2| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 162

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 143 DLMQLVSPTTCLYDTVKE----EKI---DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           DL+QLV+   C+   V+      +     I   +  +GI P ++   + L GD+ D + G
Sbjct: 1   DLLQLVNENNCIIKVVRNPGNFTEYSIETINEFVDIYGINPNQIPDYKGLAGDTSDRLKG 60

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           + GIG K A  LL E+G+LE I  N  +I  K  +E +    E+A   +KL +L  DV +
Sbjct: 61  VAGIGPKKAVSLLNEFGSLEAIYENIGKISGKT-KEYLENDYESAHFCKKLAILNPDVEM 119

Query: 256 TIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
              +++  +   N       L    F  +++
Sbjct: 120 DTDIDNYKIV-LNRNEAEEILNEFGFYNVLD 149


>gi|262342147|gb|ACY54584.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342267|gb|ACY54644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +      + AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVTVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterococcus sp. 7L76]
          Length = 545

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 169/455 (37%), Gaps = 73/455 (16%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +   S  + T              +    +  D    +    +D       D     T+ 
Sbjct: 1   MKHLSLDLET----YSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIP 56

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GIS----MRGFEDIML--------MS 493
            EIL+ L     +E  +K   N  ++++ L R+ G+      RG++  M+        +S
Sbjct: 57  AEILTSL----SDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLS 112

Query: 494 YV-------LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI-DKISDSQVQEHAIEN 545
            V       L+  + +     I    +     ++   R  ++P       S  + +   +
Sbjct: 113 LVGVGAVLGLNKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRD 172

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             V + +   L    +++ +   Y         +  ++   GI+ID+D ++        +
Sbjct: 173 VEVEIAIQGKLSNFPVLDSVWKEYW--------LDQEINDRGIEIDKDFVEAAVQLDELS 224

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
              L + + +L+G + N +S  Q+   L        G +T++   K   + LEQ    D 
Sbjct: 225 KAGLNQQLQELTGLE-NPNSVLQMRGWL-----LDHGLETESLGKKAVDELLEQ--PIDE 276

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP- 724
            + + ++  +QL+K       ++ N      +    F    +  TGR A    +LQN+P 
Sbjct: 277 NLKQVLVLRQQLAKSSVKKYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQ 336

Query: 725 ---------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                                      +   L + +R AF+     K I +D+S IE R+
Sbjct: 337 NHMSDLSEARSLVKQSNFEMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARV 396

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +A ++      +VF+N  DI+   A+++FGV +EK
Sbjct: 397 IAWLSGEKWRQEVFKNGGDIYCASASQMFGVPVEK 431


>gi|262342321|gb|ACY54671.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
            NL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   SNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE------AADY 831
             ++   I   N +K+    RR  KT+ ++ +YG    ++        S+        + 
Sbjct: 51  DVLLNGGIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQPSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262212355|gb|ACY35794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  114 bits (286), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDANFR----KLFTATPGQVMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  SILLHGDIHQENADKIGI-SRRQVKTVIYAFLYGAGDSKLGRSYDPQLSEQQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY+     RR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDSRRCTVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  I +R M+  + + ++  L    L  IHDE
Sbjct: 157 LQGSAGVIAKRWMLINYTNTKE--LCCSQLAFIHDE 190


>gi|229472289|gb|ACQ72659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      R F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----RLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  DVLLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 157 LQGSAGVLAKRWLLINHNNTRE--LCCSQLAFVHDE 190


>gi|262212391|gb|ACY35812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q  A  I +R M+   +SL    +    L  +HDE
Sbjct: 158 LQSLAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|262212061|gb|ACY35647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212137|gb|ACY35685.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212159|gb|ACY35696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI------PRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             +    + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKRGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G++E I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIEAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|109289304|gb|ABG29147.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 161

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 9/150 (6%)

Query: 144 LMQLVSPTTCLYDTVKE----EKI---DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
           L+QLV+   C+   V+      +     I   +  +GI P ++   + L GD+ D + G+
Sbjct: 1   LLQLVNENNCIIKVVRNPGNFTEYSIETINEFVDIYGINPNQIPDYKGLAGDTSDRLKGV 60

Query: 197 PGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPIT 256
            GIG K A  LL E+G+LE I  N  +I  K  +E +    E+A   +KL +L  DV + 
Sbjct: 61  AGIGPKKAVSLLNEFGSLEAIYENIGKISGKT-KEYLENDYESAHFCKKLAILNPDVEMD 119

Query: 257 IPLEHLILEDCNGPRLISFLKALEFTKLIN 286
             +++  +   N       L    F  +++
Sbjct: 120 TDIDNYKIV-LNRNEAEEILNEFGFYNVLD 148


>gi|229472505|gb|ACQ72767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQHNLKLLNLCCSQLAFVHDE 192


>gi|152206740|gb|ABS30731.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 162

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 9/151 (5%)

Query: 143 DLMQLVSPTTCLYDTVKE----EKIDIE---HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           DL+QLV+   C+   V+      +  IE     +  +GI P ++   + L GD+ D + G
Sbjct: 1   DLLQLVNENNCIIKVVRNPGNFTEYSIEPINEFVDIYGINPNQIPDYKGLAGDTSDRLKG 60

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           + GIG K A  LL E+G+LE I  N  +I  K  +E +    E+A   +KL +L  DV +
Sbjct: 61  VAGIGPKKAVSLLNEFGSLEAIYENIGKISGKT-KEYLENDYESAHFCKKLAILNPDVEM 119

Query: 256 TIPLEHLILEDCNGPRLISFLKALEFTKLIN 286
              +++  +   N       L    F  +++
Sbjct: 120 DTDIDNYKIV-LNRNEAEEILNEFGFYNVLD 149


>gi|262212135|gb|ACY35684.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342221|gb|ACY54621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  114 bits (285), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQDNLKLLNLCCSQLAFIHDE 192


>gi|262212397|gb|ACY35815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYR 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAAIAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262212165|gb|ACY35699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADPAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G++  + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIRALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQDNLKLLNLCCSQLAFIHDE 192


>gi|229472461|gb|ACQ72745.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      R F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----RLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  DVLLHGDIHQENADKIGI-SRRAVKTVTYAFLYGAGDAKLGKSFDAQLTESQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY+    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDGRRCAVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 157 LQGSAGVLAKRWLLINHNNTRE--LCCSQLAFVHDE 190


>gi|255600297|ref|XP_002537427.1| DNA polymerase I, putative [Ricinus communis]
 gi|223516387|gb|EEF24957.1| DNA polymerase I, putative [Ricinus communis]
          Length = 152

 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 5   NHLFLVDGSSFIYRAFYATP--LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62
             L  +DG + + R + A+P      K D    +A++ F        +    +   +H  
Sbjct: 2   GRLLAIDGLNIVRRVYEASPEPDSPDKADIALRHALSSF--------RTLVNDHEPTHLL 53

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             FD+   T+R+++Y  Y+  R  +P  L   LP      +  G+  + +   EADD+I 
Sbjct: 54  PAFDFGGRTWRHDLYAGYRKGRAPMPSPLREALPAFYDKLRGLGMHVVSLPEVEADDVIG 113

Query: 123 TYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVK 159
           T       EG    TI +TDKDL  L++    ++D  K
Sbjct: 114 TVVLRWLAEGRGEATIATTDKDLHGLIAHGARVWDHFK 151


>gi|163841491|ref|YP_001625896.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954967|gb|ABY24482.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 411

 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 142/410 (34%), Gaps = 51/410 (12%)

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
           S         L       +  K     E+   ++      H   +    +     L   G
Sbjct: 27  SGPDSAAVQPLDAAGQPSAETKIVRKSELTDVVRSVETQRHPRWVWQRTQAWYPQLLAAG 86

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           I++    D+ L + VL          ++   +       + +  ++ I +D    S   E
Sbjct: 87  ITVERCHDLGLSALVLAGSE-----FTLTTGY-PRETPAVEEVFEARILVDSAQQSLFDE 140

Query: 541 HAIENSNVILQLWLLLRPKLIV------EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
                   + QL   LR +L         K L +    +     V ++M+  G+    D+
Sbjct: 141 PVRRKGASLDQLAEELRAQLTAVQKSSQPKRLQLLLAAESAASLVAAEMQHAGVPWRVDI 200

Query: 595 LKQVSAEI----------SKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGA 643
            +Q+  +            + +  L   +    G    N  SP+ L   L         A
Sbjct: 201 HEQLLEDALGPRPTGMQRPEKMDRLLAELRAKLGAIGLNPDSPQDLMRALHRAGIETKSA 260

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T             ++    +P I+ +L +++LS++ S    +  +       R    Y
Sbjct: 261 RT------------WELQNIKHPAIEPLLAYKKLSRLFSANGWAWLDQWV-HDGRFRPEY 307

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763
            +    +GR AS       IP       ++R A  +    KLI AD +Q+E R+LA +A+
Sbjct: 308 VVGGVASGRWASRGGGALQIPK------QVRGAVHANHGYKLIVADAAQLEPRVLAALAQ 361

Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
              + +  ++  D++  +AA+ FG +        R  AK      IYG +
Sbjct: 362 DAKMAEAAQDH-DLYAGIAAQGFGGD--------RAKAKVALLGAIYGAT 402


>gi|262212361|gb|ACY35797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 29/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +     ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVMVGADLAGIELRMLAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           +Q SA  I +R M+   +SL    +    L  IHD
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHD 192


>gi|229472359|gb|ACQ72694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----KLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  DVLLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGKSYDAQLSEQQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 157 LQGSAGVLAKRWLLINHDNTRE--LCCSQLAFVHDE 190


>gi|229472395|gb|ACQ72712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRELFLPSPGQVMVAADLSGIELRMLSHF------LARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI------PRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 RAAYIDAIDGLDKLLASIK-TASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFVHDE 192


>gi|229472607|gb|ACQ72818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      R F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----RLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  DVLLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCSVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 157 LQGSAGVLAKRWLLINHNNTRE--LCCSQLAFIHDE 190


>gi|229472485|gb|ACQ72757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA------DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++        S A       + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKRKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFVHDE 192


>gi|229472431|gb|ACQ72730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      R F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----RLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  SILLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 157 LQGSAGVLAKRWLLINHDNTRE--LCCSQLAFVHDE 190


>gi|229472403|gb|ACQ72716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472503|gb|ACQ72766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          ++     
Sbjct: 1   PNLAQVPSD----PRFRELFLPSPGQVMVAADLSGIELRMLSHF------LARYDGGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI------PRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSPKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 RAAYIDAIDGLDKLLASIK-TASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|262342273|gb|ACY54647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342305|gb|ACY54663.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342315|gb|ACY54668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342327|gb|ACY54674.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342329|gb|ACY54675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  113 bits (283), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H           +N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARCDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLSNLCCSQLAFIHDE 192


>gi|221504718|gb|EEE30383.1| hypothetical protein TGVEG_032240 [Toxoplasma gondii VEG]
          Length = 461

 Score =  113 bits (283), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +K+  L ++DG+  ++R+ +  P +     G PV AI GF   L  +    R     SH 
Sbjct: 62  EKKKTLAVIDGTCVVFRSHFGMPEVL-DGGGFPVQAIIGFFRSLAAI---RRALLHPSHL 117

Query: 62  AVIFDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            V+FD P     R  I+  YK +R + P  L+ Q  ++    +   I  +   G EADD+
Sbjct: 118 VVVFDGPESRESRKAIFDGYKGHRSETPASLINQFAVILRLCERMQIGTLSEAGVEADDV 177

Query: 121 IATYTYIAEK 130
           IAT    A +
Sbjct: 178 IATLVNRACR 187



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 143 DLMQLVSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
           +   L  P    +    K + ID   V  ++G+   ++    ALTGDS+D I G P IG 
Sbjct: 263 ETSCLKHPKIRIMQLHRKMQLIDDAWVKMEYGVAAHQIRDYLALTGDSVDGIEGCPSIGP 322

Query: 202 KTAALLLQEY-GNLENIL---INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITI 257
            TA  ++    GN+  +L       R+ +  + +++  +      ++ L+ L  +V    
Sbjct: 323 VTAQKIVSAAGGNVNELLQDGAALRRLLKPSQVKHLSTFLPLFERNQHLISLNYEVE--- 379

Query: 258 PLEHLILEDCNGPR 271
            L  + L      +
Sbjct: 380 SLSDICLSRFEVKK 393


>gi|221484522|gb|EEE22816.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 461

 Score =  113 bits (283), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +K+  L ++DG+  ++R+ +  P +     G PV AI GF   L  +    R     SH 
Sbjct: 62  EKKKTLAVIDGTCVVFRSHFGMPEVL-DGGGFPVQAIIGFFRSLAAI---RRALLHPSHL 117

Query: 62  AVIFDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            V+FD P     R  I+  YK +R + P  L+ Q  ++    +   I  +   G EADD+
Sbjct: 118 VVVFDGPESRESRKAIFDGYKGHRSETPASLINQFAVILRLCERMQIGTLSEAGVEADDV 177

Query: 121 IATYTYIAEK 130
           IAT    A +
Sbjct: 178 IATLVNRACR 187



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 154 LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY-G 212
           +    K + ID   V  ++G+   ++    ALTGDS+D I G P IG  TA  ++    G
Sbjct: 275 MQLHRKMQLIDDAWVKMEYGVAAHQIRDYLALTGDSVDGIEGCPSIGPVTAQKIVSAAGG 334

Query: 213 NLENIL---INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           N+  +L       R+ +  + +++  +      ++ L+ L  +V     L  + L     
Sbjct: 335 NVNELLQDGAALRRLLKPSQVKHLSTFLPLFERNQHLISLNYEVE---SLSDICLSRFEV 391

Query: 270 PR 271
            +
Sbjct: 392 KK 393


>gi|237839683|ref|XP_002369139.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211966803|gb|EEB01999.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 461

 Score =  113 bits (283), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +K+  L ++DG+  ++R+ +  P +     G PV AI GF   L  +    R     SH 
Sbjct: 62  EKKKTLAVIDGTCVVFRSHFGMPEVL-DGGGFPVQAIIGFFRSLAAI---RRALLHPSHL 117

Query: 62  AVIFDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            V+FD P     R  I+  YK +R + P  L+ Q  ++    +   I  +   G EADD+
Sbjct: 118 VVVFDGPESRESRKAIFDGYKGHRSETPASLINQFAVILRLCERMQIGTLSEAGVEADDV 177

Query: 121 IATYTYIAEK 130
           IAT    A +
Sbjct: 178 IATLVNRACR 187



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 154 LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY-G 212
           +    K + ID   V  ++G+   ++    ALTGDS+D I G P IG  TA  ++    G
Sbjct: 275 MQLHRKMQLIDDAWVKMEYGVAAHQIRDYLALTGDSVDGIEGCPSIGPVTAQKIVSAAGG 334

Query: 213 NLENIL---INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           N+  +L       R+ +  + +++  +      ++ L+ L  +V     L  + L     
Sbjct: 335 NVNELLQDGAALRRLLKPSQVKHLSTFLPLFERNQHLISLNYEVE---SLSDICLSRFEV 391

Query: 270 PR 271
            +
Sbjct: 392 KK 393


>gi|32442283|gb|AAP82212.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score =  113 bits (283), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 154/431 (35%), Gaps = 75/431 (17%)

Query: 488 DIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D +++S + +  R   H + S   +   Y         K           +++++  ++ 
Sbjct: 1   DTLVLSSLFNPMRKGGHSLKSWGIRLDEY---------KGEFNDWSQYSEEMKQYCKQDV 51

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            V   ++  L  +        +   L+  +  ++ + E  G  +D +L +++        
Sbjct: 52  KVTELVYQELLKEGSKFSQASI--DLEHQVHAIMCEQEANGFLLDTNLAQEIYTTCLAET 109

Query: 607 LSLEENI-----------------YDLSG----------------------EKFNLSSPK 627
             +E +I                 Y   G                      E+FNL+S  
Sbjct: 110 TRIERDIKEFMVPIAVPVKEVNLKYKKDGSIFANQLLEGCNVQGDYTKIMWEEFNLASQP 169

Query: 628 QLGDILFTKLKFPSGAKTKTGQ-WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
           Q+   L  +L +    KTK G  +K   ++L  I       +K + +W+ L       ++
Sbjct: 170 QINKRL-NRLGWKPTVKTKGGDSYKICPENLATIPDTAPQAVKGLKKWKVLETRWKLASE 228

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI------------KTDLGQKIR 734
            L    ++   RVH        +T R A   PN+ NIP                   + R
Sbjct: 229 WLQG--SQVDGRVHGQVITPGAVTHRAAHRGPNMANIPSVPHGKDGILWKMDGMYAAECR 286

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           +AF  P  K L+  D + I+LR+LAH        +   +  DIH       F +N     
Sbjct: 287 QAFTVPEGKLLVGTDAAGIQLRVLAHYMNDPVYTEQVIDG-DIHT------FNMNALGKF 339

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            + R  AKT  ++ + G    ++A  L    ++A   ++ ++   P +   ++       
Sbjct: 340 CKDRPTAKTFIYAFLLGAGVGKIAEILGCNAAQANKSMQNFYEALPTLKR-LKSEAARAA 398

Query: 855 QNGYVETIFGR 865
             G+++ + GR
Sbjct: 399 SMGWMKGLDGR 409


>gi|229472291|gb|ACQ72660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----KLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  SILLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 157 LQGSAGVLAKRWLLINHDNTRE--LCCSQLAFVHDE 190


>gi|262342285|gb|ACY54653.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H           +N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARCDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D                A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVDP------------PHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLSNLCCSQLAFIHDE 192


>gi|197935871|ref|YP_002213707.1| DNA polymerase [Ralstonia phage RSB1]
 gi|197927034|dbj|BAG70376.1| DNA polymerase [Ralstonia phage RSB1]
          Length = 815

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 144/405 (35%), Gaps = 72/405 (17%)

Query: 640 PSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYA----------DSL 688
           PS      G +   +  +E +    D P +K +     L+K   TY             +
Sbjct: 382 PSWEGATPGVYSCDSDVMEALTARQDVPFVKVLTGVVALTKDLGTYFITHDEKTGHDKGM 441

Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--KTDLGQKIRRAFISPPTKKLI 746
              ++      HT  ++  T+T RL+S +PNLQNIP   K++        F +    K+I
Sbjct: 442 LTLVHPNDIVHHTL-NMCRTVTARLSSSDPNLQNIPKGQKSEAKTMFESRFGAD--GKII 498

Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV------------- 793
            +D+S +E+ + A +     L       +D+H M  A       ++V             
Sbjct: 499 QSDFSSLEVYVQAMLTLCKQLIADLAAGIDMHCMRLAAKEKREYDEVLMLCKKGKVGVDL 558

Query: 794 SPQMRRH-------AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
           + + R         AK+ +F   YG     +A    IP  E          R+P I EY 
Sbjct: 559 TQEERDEWDYKRTGAKSFSFQRAYGAGVAAIAAGTGIPLEEVQALADAEDARYPEIGEYF 618

Query: 847 EKTKNFVRQN----------------------GYVETIFGRRIHYDEINSPKSSIRNINE 884
           E   + +R+                       GY  T  G+R  Y E  SPK  I     
Sbjct: 619 EMKADEIRETRTPTLDIVEHPEIKGLKCQLGKGYSVTPDGKRYSYRESPSPKYMIERGRP 678

Query: 885 R------AAINAPIQGSAADITRRAMISVHKSL---EDHKLATKMLLQIHDELVFEVPEE 935
           R         N  +QG+  ++ + AM    ++    ++ K    ++  +HD    +  + 
Sbjct: 679 RTGFVPTQIKNYEVQGTGGEVMKAAMWLAVRAFYYYKNFKGLALLVNTVHDAQYVDAHKT 738

Query: 936 EITTASQIIVHSMEKA-----CLPKINLRVPLKVNIKVSNNWQEE 975
               A+ ++   M +A        K  L + +  +    +   EE
Sbjct: 739 VAVKAAGLLHACMVEASTLIEWWFKWELPIGVPSDTVWGDTMAEE 783


>gi|316934310|ref|YP_004109292.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1]
 gi|315602024|gb|ADU44559.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1]
          Length = 694

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 142/408 (34%), Gaps = 56/408 (13%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN SS K +   L   + +     T++G+ K     LE +     P    ++E+  L K 
Sbjct: 291 FNPSSRKHIIKKLKE-MGWEPQEFTESGEAKVDDDVLEGL-TDTFPQASKLVEYLLLDKR 348

Query: 681 KSTYADS---LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI-KTDLGQKIRRA 736
               AD        ++   + +H       T+  R +   PN+  +P  K+  G + R  
Sbjct: 349 LGQLADGDNAWLKKVHDDGK-MHGAMDTMGTVHSRASHFSPNMGQVPAAKSPYGAECRAL 407

Query: 737 FISPP------TK-------KLISADYSQIELRILAHIAK--ITPLYQVFENSLDIHRMV 781
           F                     + AD S ++LR LAH+        Y     S D+H   
Sbjct: 408 FGPNGIDTHTAGWGGEKEEIVQVGADMSGLQLRALAHLLHPLDGGAYSDIVTSGDVHWSH 467

Query: 782 AAEIFGVNIEK--------VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833
              +  V  E+         +    + AKT  +S ++G  P +    +R   + A +   
Sbjct: 468 TQAMGLVGPEEPRDKHSELHNILREKGAKTFGYSYLFGCFPPKSGRVVRDCLTTAKNKNP 527

Query: 834 RYFHRFPGIHEYIE-----KTKNFVRQNGYVETIFGRRIHYDEINSP------------- 875
            + + F    + +      + ++       V   F  R+    +++              
Sbjct: 528 EWGYLFDRFFKAMTTKGAIRIRSDKEVGTVVRKSFDERLKLGRLHAKLKACLKHYKNHLP 587

Query: 876 ---KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK----MLLQIHDEL 928
                 +   +E +A+N       A + ++ +     +LE           ++L +HDE 
Sbjct: 588 GLDDRLVPCRSEHSALNFACSSIEAILCKQWLCDSVSALEAKGYVWGRDFVLMLWVHDEQ 647

Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                +       + +V   ++A + K+  RVPL    K+  NW + +
Sbjct: 648 QIACRKSIAEEVGKTLVECAKQAGV-KLGFRVPLASEYKIGRNWLDCH 694



 Score = 46.6 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 74/229 (32%), Gaps = 9/229 (3%)

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
             D+  K     + +    +  +          + YD LVL + +G  ++   D  +++ 
Sbjct: 27  DLDTKEKFAFGPDQIPQALELLDKADEGIAHFGLGYDFLVLEKLHGFKLKKATDSFIIAK 86

Query: 495 VLDSGRSSHDIASI------AQKWLSYTRKEILKSRKSSIPIDKISD-SQVQEHAIENSN 547
           ++   +   D A +       +    ++ +              I D S+      E   
Sbjct: 87  LMRPSQKDADTALVKAGRLPGKLHGKHSIEAWGYRLGVQKLHADIEDWSEFTPEMQERCE 146

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
             + +   L   L  +        L+  +  +  +ME  G+  DQ+  +++   +     
Sbjct: 147 SDVDVQDALWDWLKPDAYSQRAIELEHRIARLCRRMEAAGVWFDQEAAQKLHVALLGKQE 206

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
            +  ++    G  +     K +G   F +   P  A  K G W    Q 
Sbjct: 207 HIANDLIAEFGSWYEPEK-KGMGPDGFAQTWTPKKADPKRGYWGHYEQV 254


>gi|229472209|gb|ACQ72619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472325|gb|ACQ72677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472333|gb|ACQ72681.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472437|gb|ACQ72733.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----KLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  DVLLHGDIHQENADKIGI-SRRAVKTVTYAFLYGAGDAKLGKSYDAQLTESQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCSVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  +HDE
Sbjct: 157 LQGSAGVLAKRWLLINHNNTRE--LCCSQLAFVHDE 190


>gi|229472459|gb|ACQ72744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----KLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  DVLLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGKSYDAQLSEQQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 157 LQGSAGVLAKRWLLINHNNTRE--LCCSQLAFIHDE 190


>gi|282554654|ref|YP_003347671.1| DNA polymerase [Klebsiella phage KP34]
 gi|262410487|gb|ACY66751.1| DNA polymerase [Klebsiella phage KP34]
          Length = 786

 Score =  112 bits (281), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/398 (16%), Positives = 118/398 (29%), Gaps = 73/398 (18%)

Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY--------------ADSLPNHI 692
           T  + T+   +E +        + + E   L K   TY                 +  ++
Sbjct: 381 TPVYSTSTDAMEALARQGFEFCRLVNELGALEKDTGTYYLRTEYNEDGSVKKTSGMLQYV 440

Query: 693 NKRTQ----RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
             +       +H   +  +T+TGRL+   PNLQN+P       K         + ++   
Sbjct: 441 IPQNPDGSGIIHHRLNTCATVTGRLSGSNPNLQNLPRDGTSRVKQMFTSRFGESGRITEV 500

Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS-------------- 794
           DYS +E+ +         L  + +   D+H    A   G   E++               
Sbjct: 501 DYSALEVVMGCVHTGDRKLLSLLQAGTDMHCYRLAFKEGKTYEEMYDLCHNADGPDYKYW 560

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            Q R   K  +F+  YG +   +A         A  ++      FP    +    K  V 
Sbjct: 561 KQQRTDIKPPSFAAQYGATAKGIAFATGCTVEYAQSFLDNEAKLFPDTIGFRAVVKEEVE 620

Query: 855 QNG--------YVETIFGRRIHYDEINSPKSSIRNINE---------------------R 885
           + G          +    R        SP  +  +  +                      
Sbjct: 621 RTGAEGRLYREQADDGSYRVYRIGTWTSPAGARYSFRQKEQWKEVVPEQRKQKVMDYKET 680

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKL---ATKMLLQIHDELVFEVPEEEI-TTAS 941
              N   QG A  +   A   V ++L           ++  +HD L  +    E+   AS
Sbjct: 681 EMANYWCQGEAFFLMAVAAGMVLRALLARDWFDNQVCLITNVHDALYLDSANPEVGREAS 740

Query: 942 QIIVHSMEKACLPKINL--------RVPLKVNIKVSNN 971
            ++   ME A      L         VP     ++  +
Sbjct: 741 LLVKQCMEDAPKRIHQLWPNYGIIGEVPFPAEAEMGTS 778


>gi|229472387|gb|ACQ72708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  112 bits (281), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVDCR----SLFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + ++ 
Sbjct: 51  DILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D            +   A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKETGSIRSIDGRKILVD------------SPHKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    +HDE
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQ--GIEHERYAFVHDE 191


>gi|229472211|gb|ACQ72620.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  112 bits (281), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----KLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  SILLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGKSYDAQLTESQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCSVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 157 LQGSAGVLAKRWLLINHNNTRE--LCCSQLAFIHDE 190


>gi|229472425|gb|ACQ72727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVDCR----SLFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
           + ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + ++ 
Sbjct: 51  NILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D            +   A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKETGSIRSIDGRKILVD------------SPHKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    +HDE
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQ--GIEHERYAFVHDE 191


>gi|47934660|gb|AAT39768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D D  + + A++S  +  +E+ +             + +G++       FNL+
Sbjct: 1   ERNGFKLDIDACELLRAKLSDRMGIIEDEVQAVFPPIVEERWSEKTGKRLKDKITVFNLA 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L +     T+ GQ       LE I   D P  K I E+  L K +   
Sbjct: 61  SRKQIAERLM-GLGWTPTKHTEKGQPIVDEGTLEDI---DIPQAKLIAEYLMLQK-RVGM 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD-LGQKIRRAFISPPTK 743
            DS   H++K T RVH       T+TGR+A   PNL  +P  T   G++IR  +      
Sbjct: 116 IDSWLKHVDKTTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKPYGEEIRSLWTVDEGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+ +D S +ELR L+H  +     +   N  DIH 
Sbjct: 176 VLVGSDLSGVELRCLSHYMQDEEWQEELLNG-DIHT 210


>gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 200/584 (34%), Gaps = 80/584 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
             I T +        + +       +          + D  V    D T ++ +  ++L 
Sbjct: 6   IDIETRSPQPLPK--VGV---WAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQ 59

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM--RGFEDIMLMSYVLDSGRSSHDIASI 508
           YL+    +E  + + HN  +++++  +  GI +  + +    +++   +   SS   A +
Sbjct: 60  YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACL 114

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP--KLIVEKLL 566
           A  +  +  K  ++  K+ I            +    +N + Q W L     K  VE   
Sbjct: 115 ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATR 171

Query: 567 HVYERL------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
            +++RL      ++ +  +   +   G +ID DL+ ++   I++    L+E+I  L+   
Sbjct: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231

Query: 621 FNLSSPKQ---LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
             + S +Q   L   LF          ++       +         D      IL     
Sbjct: 232 --IRSSRQTYTLRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-----LILNRLAS 284

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--KTDL------ 729
           S       ++L   ++   +   T     ++ TGR +      QN+P   +++       
Sbjct: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344

Query: 730 ----------------GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
                              +R   I+   KKL+ AD + IE R+LA IA      + F N
Sbjct: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP---FRLATQLRIPRSEAAD 830
             DI+    A+ F   I+KVS + R   K +  ++ Y         +A+   +   + + 
Sbjct: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464

Query: 831 YIK--RYFHRFPGIHE---YIEKTK-NFVRQNGYVETIF------GRRIHYDEINSPKSS 878
            +K    F  +        +++     F  ++  + T         R  H   +   K  
Sbjct: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
                        +Q   +   RR        +  HK    ++L
Sbjct: 525 TEGFAC------VVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562


>gi|262342107|gb|ACY54564.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 32/215 (14%)

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NL  +P   +      + F + P + ++ AD S IELR+LAH          ++      
Sbjct: 3   NLAQVPSDAEFR----KLFKASPNQVMVGADLSGIELRMLAHY------LARYDEGRYAD 52

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADYI 832
            ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  +  
Sbjct: 53  VLLHGDIHQENADKIGI-SRRAVKTVTYAFLYGAGDSKLGKSFDAQLTEQQAKKKGKEIR 111

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + Y    PG+ + +   K+   ++GY+    GRR   D                A+N  +
Sbjct: 112 QAYMDAVPGLEKLVNAVKSKA-ESGYINLCDGRRCSVD------------GSHKALNYLL 158

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           QGSA  + +R M+  H +  +  L    L  IHDE
Sbjct: 159 QGSAGVLAKRWMLINHDNTRE--LCCSQLAFIHDE 191


>gi|262212373|gb|ACY35803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDANFR----KLFTATPGQVMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP--FRLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG        +   ++   +A     + 
Sbjct: 51  SILLHGDIHQENADKIGI-SRRQVKTVIYAFLYGAGDSKPGRSYDPQLSEQQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY+     RR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDSRRCTVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  I +R M+  + + ++  L    L  IHDE
Sbjct: 157 LQGSAGVIAKRWMLINYTNTKE--LCCSQLAFIHDE 190


>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1]
 gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1]
          Length = 675

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 200/584 (34%), Gaps = 80/584 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
             I T +        + +       +          + D  V    D T ++ +  ++L 
Sbjct: 6   IDIETRSPQPLPK--VGV---WAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQ 59

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM--RGFEDIMLMSYVLDSGRSSHDIASI 508
           YL+    +E  + + HN  +++++  +  GI +  + +    +++   +   SS   A +
Sbjct: 60  YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACL 114

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP--KLIVEKLL 566
           A  +  +  K  ++  K+ I            +    +N + Q W L     K  VE   
Sbjct: 115 ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATR 171

Query: 567 HVYERL------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
            +++RL      ++ +  +   +   G +ID DL+ ++   I++    L+E+I  L+   
Sbjct: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231

Query: 621 FNLSSPKQ---LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
             + S +Q   L   LF          ++       +         D      IL     
Sbjct: 232 --IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-----LILNRLAS 284

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--KTDL------ 729
           S       ++L   ++   +   T     ++ TGR +      QN+P   +++       
Sbjct: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344

Query: 730 ----------------GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
                              +R   I+   KKL+ AD + IE R+LA IA      + F N
Sbjct: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP---FRLATQLRIPRSEAAD 830
             DI+    A+ F   I+KVS + R   K +  ++ Y         +A+   +   + + 
Sbjct: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464

Query: 831 YIK--RYFHRFPGIHE---YIEKTK-NFVRQNGYVETIF------GRRIHYDEINSPKSS 878
            +K    F  +        +++     F  ++  + T         R  H   +   K  
Sbjct: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
                        +Q   +   RR        +  HK    ++L
Sbjct: 525 TEGFAC------VVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562


>gi|229472559|gb|ACQ72794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score =  112 bits (280), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 26/192 (13%)

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              ++ AD + IELR+LAH          ++       ++  +I   N +K+    RR  
Sbjct: 1   GYVMVGADLAGIELRMLAHY------LARYDGGRYGDVLLNGDIHQENADKIGI-SRRLV 53

Query: 802 KTINFSIIYGISPF--RLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           KT+ ++ +YG       L+   ++    A     +  + Y    PG+ + +   K+   +
Sbjct: 54  KTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLEKLVTAVKSKA-E 112

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
           +GY++   GRR   D                A+N  +QGSA  + +  M+  H  ++ ++
Sbjct: 113 SGYIQLCDGRRCPVD------------GSHKALNYLLQGSAGCVAKLWMVHTHNVIKLNQ 160

Query: 916 LATKMLLQIHDE 927
           +    L  IHDE
Sbjct: 161 IKAYQLAFIHDE 172


>gi|262342111|gb|ACY54566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDG----RFRELFIPSPGQLMVGADLSGIELRMLAHY------LARYDGGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG    ++ T           + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRREVKTVTYAFLYGAGDAKIGTSFDSSLSETKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              +     G+ E +   K      G+V +I  R+I  D            +   A+N  
Sbjct: 110 RSAFISAIDGLDELLSAIKE-ASTRGFVRSIDQRKILVD------------SPHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q  A  + ++ M+  + ++ +  +    L  IHDE
Sbjct: 157 LQSGAGVVAKKWMLINNDTINNVGICCSQLAFIHDE 192


>gi|229472319|gb|ACQ72674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   D      + F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDKDFR----KLFQATPGQVMVGADLSGIELRMLAHY------LARYDAGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I   N +K+    R+  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  EVLLHGDIHQENADKIGI-SRKQVKTVTYAFLYGAGDAKLGRSYDPQLNEKEAKRKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+   +   K+   ++GY+    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLETLVTAVKSKA-ESGYINLCDGRRCSVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R M+  H +  +  L    L  +HDE
Sbjct: 157 LQGSAGVLAKRWMLINHDNTRE--LCCSQLAFVHDE 190


>gi|262342103|gb|ACY54562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342129|gb|ACY54575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 29/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F +      + AD + IELR+ AH          ++     
Sbjct: 1   PNLAQVPSDLEFR----KLFTASSGYVTVGADLAGIELRMPAHY------LARYDGGRYG 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++    A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   RQ  Y+  I GRRI  D                A+N  
Sbjct: 110 RQAYMDAIPGLQKLVEAVKCKARQYNYINAIDGRRIACD------------GPHKALNYL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M+   +SL    +    L  IHDE
Sbjct: 158 LQSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|325117552|emb|CBZ53104.1| putative DNA polymerase I [Neospora caninum Liverpool]
          Length = 542

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +  L ++DG+  ++R+ +  P +     G+PV AI GF   L  +    R     SH  V
Sbjct: 51  KKILAVIDGTCVVFRSHFGMPEVL-DGGGVPVQAIIGFFRSLAAI---RRALLQPSHLVV 106

Query: 64  IFDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           +FD P     R  I+  YK +R + P  L+ Q  ++    +   I  +   G EADD+IA
Sbjct: 107 VFDGPESRESRKAIFDGYKGHRSETPASLVNQFAIILRLCERMQITTLSEPGVEADDVIA 166

Query: 123 TYTYIAEK 130
           T    A +
Sbjct: 167 TLVNRACR 174



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 12/180 (6%)

Query: 154 LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL-QEYG 212
           +    K + ID   V  ++G+   ++    ALTGDS+D I G P IG  TA  ++    G
Sbjct: 351 MQLHKKMQIIDDTWVKMEYGVAAHQIRDYLALTGDSVDGITGCPSIGPITAQKIVSAASG 410

Query: 213 NLENILIN---ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           N+  +L N     R+ +  + +++  +      ++ LV L  +V     L ++ L     
Sbjct: 411 NVNALLQNGAALRRLLKPSQVKHLSTFLPLFERNQHLVSLNYEVE---SLSNICLSRFEV 467

Query: 270 PRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
            +     KA  F  L +R+AT     A       L  +    K +A   +  R +    S
Sbjct: 468 KK-----KASSFAPLCSRLATPSSHAAKPPYTHALRQHVKAAKDLAEGGKFKRHSGCSFS 522


>gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 200/584 (34%), Gaps = 80/584 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
             I T +        + +       +          + D  V    D T ++ +  ++L 
Sbjct: 6   IDIETRSPQPLPK--VGV---WAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQ 59

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM--RGFEDIMLMSYVLDSGRSSHDIASI 508
           YL+    +E  + + HN  +++++  +  GI +  + +    +++   +   SS   A +
Sbjct: 60  YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACL 114

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP--KLIVEKLL 566
           A  +  +  K  ++  K+ I            +    +N + Q W L     K  VE   
Sbjct: 115 ALNFSEHLTK--MEEGKALIARFCNGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATR 171

Query: 567 HVYERL------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
            +++RL      ++ +  +   +   G +ID DL+ ++   I++    L+E+I  L+   
Sbjct: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231

Query: 621 FNLSSPKQ---LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
             + S +Q   L   LF          ++       +         D      IL     
Sbjct: 232 --IRSSRQTYTLRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-----LILNRLAS 284

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--KTDL------ 729
           S       ++L   ++   +   T     ++ TGR +      QN+P   +++       
Sbjct: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344

Query: 730 ----------------GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
                              +R   I+   KKL+ AD + IE R+LA IA      + F N
Sbjct: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP---FRLATQLRIPRSEAAD 830
             DI+    A+ F   I+KVS + R   K +  ++ Y         +A+   +   + + 
Sbjct: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464

Query: 831 YIK--RYFHRFPGIHE---YIEKTK-NFVRQNGYVETIF------GRRIHYDEINSPKSS 878
            +K    F  +        +++     F  ++  + T         R  H   +   K  
Sbjct: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
                        +Q   +   RR        +  HK    ++L
Sbjct: 525 TEGFAC------VVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562



 Score = 38.1 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           + +   S     R    +   N  +Q  + DI    M +  K+         ++L +HDE
Sbjct: 579 YLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631

Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +V E P+    +    +   M K   P      PLK  
Sbjct: 632 IVSETPDTPYFSVGT-LCSLMTK--NPSWAKGFPLKAE 666


>gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 200/584 (34%), Gaps = 80/584 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
             I T +        + +       +          + D  V    D T ++ +  ++L 
Sbjct: 6   IDIETRSPQPLPK--VGV---WAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQ 59

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM--RGFEDIMLMSYVLDSGRSSHDIASI 508
           YL+    +E  + + HN  +++++  +  GI +  + +    +++   +   SS   A +
Sbjct: 60  YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACL 114

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP--KLIVEKLL 566
           A  +  +  K  ++  K+ I            +    +N + Q W L     K  VE   
Sbjct: 115 ALNFSEHLTK--MEEGKALIARFCNGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATR 171

Query: 567 HVYERL------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
            +++RL      ++ +  +   +   G +ID DL+ ++   I++    L+E+I  L+   
Sbjct: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231

Query: 621 FNLSSPKQ---LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
             + S +Q   L   LF          ++       +         D      IL     
Sbjct: 232 --IRSSRQTYTLRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-----LILNRLAS 284

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--KTDL------ 729
           S       ++L   ++   +   T     ++ TGR +      QN+P   +++       
Sbjct: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344

Query: 730 ----------------GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
                              +R   I+   KKL+ AD + IE R+LA IA      + F N
Sbjct: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP---FRLATQLRIPRSEAAD 830
             DI+    A+ F   I+KVS + R   K +  ++ Y         +A+   +   + + 
Sbjct: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464

Query: 831 YIK--RYFHRFPGIHE---YIEKTK-NFVRQNGYVETIF------GRRIHYDEINSPKSS 878
            +K    F  +        +++     F  ++  + T         R  H   +   K  
Sbjct: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
                        +Q   +   RR        +  HK    ++L
Sbjct: 525 TEGFAC------VVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562


>gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  112 bits (279), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 200/584 (34%), Gaps = 80/584 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
             I T +        + +       +          + D  V    D T ++ +  ++L 
Sbjct: 6   IDIETRSPQPLPK--VGV---WAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQ 59

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM--RGFEDIMLMSYVLDSGRSSHDIASI 508
           YL+    +E  + + HN  +++++  +  GI +  + +    +++   +   SS   A +
Sbjct: 60  YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACL 114

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP--KLIVEKLL 566
           A  +  +  K  ++  K+ I            +    +N + Q W L     K  VE   
Sbjct: 115 ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATR 171

Query: 567 HVYERL------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
            +++RL      ++ +  +   +   G +ID DL+ ++   I++    L+E+I  L+   
Sbjct: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231

Query: 621 FNLSSPKQ---LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
             + S +Q   L   LF          ++       +         D      IL     
Sbjct: 232 --IRSSRQTYTLRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-----LILNRLAS 284

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--KTDL------ 729
           S       ++L   ++   +   T     ++ TGR +      QN+P   +++       
Sbjct: 285 SGSAILKLNTLSETVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344

Query: 730 ----------------GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
                              +R   I+   KKL+ AD + IE R+LA IA      + F N
Sbjct: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP---FRLATQLRIPRSEAAD 830
             DI+    A+ F   I+KVS + R   K +  ++ Y         +A+   +   + + 
Sbjct: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464

Query: 831 YIK--RYFHRFPGIHE---YIEKTK-NFVRQNGYVETIF------GRRIHYDEINSPKSS 878
            +K    F  +        +++     F  ++  + T         R  H   +   K  
Sbjct: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
                        +Q   +   RR        +  HK    ++L
Sbjct: 525 TEGFAC------VVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562


>gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  112 bits (279), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 200/584 (34%), Gaps = 80/584 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
             I T +        + +       +          + D  V    D T ++ +  ++L 
Sbjct: 6   IDIETRSPQPLPK--VGV---WAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQ 59

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM--RGFEDIMLMSYVLDSGRSSHDIASI 508
           YL+    +E  + + HN  +++++  +  GI +  + +    +++   +   SS   A +
Sbjct: 60  YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACL 114

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP--KLIVEKLL 566
           A  +  +  K  ++  K+ I            +    +N + Q W L     K  VE   
Sbjct: 115 ALNFSEHLTK--MEEGKALIARFCNGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATR 171

Query: 567 HVYERL------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
            +++RL      ++ +  +   +   G +ID DL+ ++   I++    L+E+I  L+   
Sbjct: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231

Query: 621 FNLSSPKQ---LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
             + S +Q   L   LF          ++       +         D      IL     
Sbjct: 232 --IRSSRQTYTLRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-----LILNRLAS 284

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--KTDL------ 729
           S       ++L   ++   +   T     ++ TGR +      QN+P   +++       
Sbjct: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344

Query: 730 ----------------GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
                              +R   I+   KKL+ AD + IE R+LA IA      + F N
Sbjct: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP---FRLATQLRIPRSEAAD 830
             DI+    A+ F   I+KVS + R   K +  ++ Y         +A+   +   + + 
Sbjct: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464

Query: 831 YIK--RYFHRFPGIHE---YIEKTK-NFVRQNGYVETIF------GRRIHYDEINSPKSS 878
            +K    F  +        +++     F  ++  + T         R  H   +   K  
Sbjct: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
                        +Q   +   RR        +  HK    ++L
Sbjct: 525 TEGFAC------VVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562


>gi|229472509|gb|ACQ72769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  112 bits (279), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRRLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|229472443|gb|ACQ72736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFVHDE 192


>gi|262212227|gb|ACY35730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++A+ S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAANLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI------PRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             +    + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKRGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G++E I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIEAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|32442313|gb|AAP82227.1| DNA polymerase [Podovirus GOM]
          Length = 404

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 132/369 (35%), Gaps = 54/369 (14%)

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H + +   + L   + E     KS          ++  +  ++  V +++  L   KL
Sbjct: 31  GRHSLEAWGHR-LGVHKSEF---GKSLDGDWSTYTPEMGAYCQQDVVVSVKVAQLFESKL 86

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-- 618
                       +  + DV++  E  G   D D  +Q+ +++   L ++ E +       
Sbjct: 87  ETH---SDCIDTEHRIADVMAWQERVGFPFDVDKAQQLESKLRTELDAISEEMRSTFAFV 143

Query: 619 -------------------------EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653
                                    ++F+ +S   +     T   +    +T +G+ K  
Sbjct: 144 DGGCFTPKRSNGPRGYVEGAAMCKLKEFSPTSRDHIAWAFETFRNWEPKERTASGRAKID 203

Query: 654 AQDLEQINCGDNPIIKNILEWRQ-LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
              L++I   +      ILE ++ L ++       L   +N +         + +T TGR
Sbjct: 204 DSVLKEIGSPEALKFARILELQKHLGQLSEGKNAWLQQEVNGKIH----HSCILNTNTGR 259

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           +A L PNL   P   +        F     +  + AD S +ELR LAH        +  E
Sbjct: 260 MAHLRPNLAQAPSAPEYR----ALFHPGTNRLQVGADASGLELRCLAHYLAPFDGGKFAE 315

Query: 773 N--SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
           +    DIH  +AA I+G +        R+  K + + +IYG    +L       +++AA 
Sbjct: 316 SVVHGDIHTDLAA-IYGTD--------RKSGKGVTYCLIYGGGDTKLGLTAGASKAQAAK 366

Query: 831 YIKRYFHRF 839
             K    R 
Sbjct: 367 KGKEIRGRI 375


>gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 368

 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 104/287 (36%), Gaps = 54/287 (18%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
             L N+  +  L Q +R  F +    +L  +D+S IE R++A  AK      VF     I
Sbjct: 77  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI 136

Query: 778 HRMVAAEIFGVNIEKVSP--QMRRHAKTINFSIIYGISPFRL----ATQLRIPRSEAADY 831
           +   A+++F V +E ++    +R+  K    ++ Y      L    A ++ I  +E    
Sbjct: 137 YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL 196

Query: 832 IKRYFHRFPGIHEYIEKTKNFV------------------RQNGY--VETIFGRRIHYD- 870
           +  + +  P I  + +  +                      + G+  +E   GR + Y  
Sbjct: 197 VDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPK 256

Query: 871 ------------------EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
                             ++N   S ++    +   N  +Q +A D+   ++  +     
Sbjct: 257 ALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVEN-IVQATARDLLAISIARLEA--- 312

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
              L  K++  +HDE++ E+P        + I   M K       L 
Sbjct: 313 ---LGFKIVGHVHDEVIVEIPRGS--NGLKEIETIMNKPVDWAKGLN 354


>gi|229472421|gb|ACQ72725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++ +  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIRELNLCCSQLAFVHDE 192


>gi|117530349|ref|YP_851192.1| DNA polymerase [Microcystis phage Ma-LMM01]
 gi|117165961|dbj|BAF36269.1| DNA polymerase [Microcystis phage Ma-LMM01]
          Length = 320

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 39/246 (15%)

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR------- 779
           T +    R A  +PP    +S D+S  ELR+    +K + + +++      HR       
Sbjct: 2   TKIKMNSRFALQAPPGYAWVSVDFSSQELRLAGAFSKDSAITEIYVLEDKYHRGIRPLPL 61

Query: 780 ---------------MVAAEIFGVNIE--------------KVSPQMRRHAKTINFSIIY 810
                          +VA+     +IE               V    R+  K +NF +IY
Sbjct: 62  SPEGLTYTDPKVDQHLVASTFLNKDIERRMIHEPWTVSADDPVISPWRKKGKIMNFKVIY 121

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
           G S   LA  L     EA   +K+YF  F G++ +IE T +   +  +V +  GR I+ +
Sbjct: 122 GGSASSLAADLNCDDKEAGRLLKQYFTGFHGLYTWIEITGSLCSRTRWVRSAMGRFINVN 181

Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE---DHKLATKMLLQIHDE 927
           E N+   + ++   R A+N+ IQ S +++ + ++  V +++E     +    ++   HDE
Sbjct: 182 EDNAKGIAGKSTTRRKAVNSVIQSSGSEMLKISLPRVRQAIETIDAGERRASIINATHDE 241

Query: 928 LVFEVP 933
           +   VP
Sbjct: 242 INLLVP 247


>gi|229472169|gb|ACQ72599.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472187|gb|ACQ72608.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472201|gb|ACQ72615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472299|gb|ACQ72664.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472313|gb|ACQ72671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472317|gb|ACQ72673.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472413|gb|ACQ72721.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFVHDE 192


>gi|158345045|ref|YP_001522810.1| putative DNA polymerase A [Pseudomonas phage LKD16]
 gi|114796398|emb|CAK25954.1| putative DNA polymerase A [Pseudomonas phage LKD16]
          Length = 808

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 130/393 (33%), Gaps = 82/393 (20%)

Query: 660 INCGDNPIIKNILEWRQLSK------IKSTY--------ADSLPNHINKRTQRVHTFYSL 705
           +        K ++   +L K      I  TY           +  ++++    +H   + 
Sbjct: 409 LEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGSIKDTKGMLQYVDEDGI-IHHSLNT 467

Query: 706 ASTMTGRLASLEPNLQNIPIKTDL----GQKIRRAFISP--PTKKLISADYSQIELRILA 759
            +T T RL+S  PNLQ +P K +     G +++  F+S   P   L   DY+ +E+ +LA
Sbjct: 468 TATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGPDGMLGETDYTALEVVMLA 527

Query: 760 HIAKITPLYQVFENSLDIHR-MVAAE---IFGVNIEKVSP--------------QMRRHA 801
            ++K   L +      D+H   +A +     G + +++                Q R+  
Sbjct: 528 ALSKDRNLLEKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHEWHGRVMQARKKI 587

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV-- 859
           K   FS  YG S   +A        EA +++      FP    + +  ++       V  
Sbjct: 588 KPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAEATSLVMY 647

Query: 860 ------------------ETIFGRRIHY--------------DEINSPKSSIRNINERAA 887
                                  RR ++                    + ++ +  +   
Sbjct: 648 KAEDQMPAGAFSEMGSDGNWRQYRRGYWQAPGGTCYSFRQQERWDKEQRKTVMDFKDTQI 707

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHK---LATKMLLQIHDELVFEVPEEEITTASQII 944
            N   QG A  +   ++  + + +       +   ++  +HD +  +  ++     ++ +
Sbjct: 708 ANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVNKGV 767

Query: 945 VHSMEKACLPKIN-L-----RVPLKVNIKVSNN 971
              M  A       L      VP     ++  N
Sbjct: 768 RDIMADAARYMSERLGYDIADVPFPAVAEMGPN 800


>gi|70918106|ref|XP_733082.1| 5'-3' exonuclease, N-terminal resolvase-like domain, [Plasmodium
           chabaudi chabaudi]
 gi|56504551|emb|CAH76102.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium chabaudi chabaudi]
          Length = 202

 Score =  111 bits (277), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 76/204 (37%), Gaps = 42/204 (20%)

Query: 36  NAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN-EIYPDYKANRPKIPEMLLPQ 94
           + I GF   L K+ +      I     +IFD         EIY  YK  R K PE L  Q
Sbjct: 4   STIYGFTQSLNKIYKLFCPSYI-----IIFDSKTSNKEKREIYAQYKTLRKKNPEELYEQ 58

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA-------------------------- 128
           L LV       GI  I  +  E+D+ IA+                               
Sbjct: 59  LKLVSEFCDIIGIKTIISENVESDNYIASLVDKIYNTIQTNNEWGPRHDENGLVSLTDDE 118

Query: 129 -EKEGFAVTIISTDKDLMQLVSPTTCLYDT---------VKEEKIDIEHVIKKWGIPPEK 178
            ++  F + ++S+DKDL+QL+      ++           K   ++    I++  I P +
Sbjct: 119 IKENNFRIVVVSSDKDLLQLLEYNDNDHNNIDISVCQPNRKYRVVNAHTFIQEHEIYPNQ 178

Query: 179 MVCLQALTGDSIDNIPGIPGIGYK 202
                 L GD  D I G+P IG K
Sbjct: 179 YSDYLILAGDKTDGISGLPNIGDK 202


>gi|229472171|gb|ACQ72600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  111 bits (277), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y      + + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDELDKLLAAIKK-ASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFVHDE 192


>gi|229472301|gb|ACQ72665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRTLFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFIHDE 192


>gi|213025755|ref|ZP_03340202.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 107

 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 1/108 (0%)

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT  G   T+ + LE++   D P+ K ILE+R L+K+KSTY D LP  IN +T RVHT Y
Sbjct: 1   KTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY 59

Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751
             A T TGRL+S +PNLQNIP++ + G++IR+AFI+P    ++SADYS
Sbjct: 60  HQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYS 107


>gi|229472263|gb|ACQ72646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA------DY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++        S A       + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGEEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A   +R M+   ++++D  L    L  +HDE
Sbjct: 157 LQGNSAIPAKRWMVINQQNIKDLNLCCSQLAFVHDE 192


>gi|229472517|gb|ACQ72773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  F+  P + +++AD S IELR+L+H          +++      ++  +I  VN 
Sbjct: 7   PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDIHQVNA 60

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 61  DKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGLDK 119

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +        + G+++ I GRRI  D            +   A+N  +QG++A + +R M
Sbjct: 120 LL-AAIKTASERGFIKAIDGRRIMVD------------SPHKALNYCLQGNSAILAKRWM 166

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +   ++++D  L    L  IHDE
Sbjct: 167 VINQQNIKDLNLCCSQLAFIHDE 189


>gi|229472381|gb|ACQ72705.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472595|gb|ACQ72812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVDCR----SLFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + ++ 
Sbjct: 51  DILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D            +   A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGRKILVD------------SPHKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    +HDE
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQ--GIEHERYAFVHDE 191


>gi|229472405|gb|ACQ72717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|71030922|ref|XP_765103.1| 5'-3' exonuclease [Theileria parva strain Muguga]
 gi|68352059|gb|EAN32820.1| 5'-3' exonuclease, putative [Theileria parva]
          Length = 470

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
              + + +VDG+   YR F+A P L +   G  +  + GF N L +L     +     + 
Sbjct: 94  NAPDRVMIVDGTGLAYRCFFALPDL-KTSKGTDIGCLMGFMNSLARL----HRMFDPKYI 148

Query: 62  AVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            V+FD P     + +I+P+YK NR  +   L  QL  +R      G+P       EADDI
Sbjct: 149 GVVFDSPGANDEKRDIWPEYKLNRQVVSYSLRNQLGWIREFCAILGLPVFIEPSTEADDI 208

Query: 121 IATYTYIAEK 130
           I +      +
Sbjct: 209 ITSMITFFRE 218



 Score =  103 bits (257), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 7/160 (4%)

Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVK-------EEKIDIEHVIKKWGIPPEKMVCLQ 183
            G+ +T+++ DKDL+Q++S        VK          ++   V +++GI PE+     
Sbjct: 300 RGYDITVVTADKDLLQILSENDANKVNVKIVQPHKSYRIVNQHTVKQEYGIDPERFSEYL 359

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243
           AL GD+ DNIPGI GIG KTA  L+Q+Y + ++IL +    K   +     E    A   
Sbjct: 360 ALVGDTADNIPGIMGIGPKTAPKLIQKYQSFDDILRSEEITKLSSKGGKYRESVRMAHEF 419

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
             +V L+ ++ +   ++ L+  +    +L  FLK     K
Sbjct: 420 HSIVKLKKNLRVLKSMDQLVKSNALTCQLSKFLKMFSLQK 459


>gi|229472411|gb|ACQ72720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472513|gb|ACQ72771.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472523|gb|ACQ72776.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFVHDE 192


>gi|84994918|ref|XP_952181.1| 5'-3' exonuclease [Theileria annulata strain Ankara]
 gi|65302342|emb|CAI74449.1| 5'-3' exonuclease, putative [Theileria annulata]
          Length = 501

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 19/188 (10%)

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK------- 159
           +P  E      +DI++   Y     G+ +T+++ DKDL+Q++S        VK       
Sbjct: 311 LPYREYPVTSENDIMSNGVYR----GYDITVVTADKDLLQILSQNDVNKINVKIVQPHKS 366

Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL- 218
              ++   V +++GI PE+     AL GD+ DNIPGI GIG KTA  L+Q+Y + ++IL 
Sbjct: 367 YRIVNQHTVKQEYGIEPERFSEYLALVGDTADNIPGIMGIGPKTAPKLIQKYQSFDDILR 426

Query: 219 -INASRI--KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
               S++  K  K RE++      A     +V L+ ++ +   ++ L+  +    +L  F
Sbjct: 427 SEEISKLSSKGGKYRESVR----MAHEFHSIVKLKRNLRVLKSMDQLVKSNALTCQLSKF 482

Query: 276 LKALEFTK 283
           LK     K
Sbjct: 483 LKMFSLQK 490



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
                + +VDG+   YR F+A P L +   G  +  + GF N L +L     +     + 
Sbjct: 123 NSPERVMIVDGTGLAYRCFFALPDL-KTSKGTDIGCLMGFMNSLARL----HRMFDPKYI 177

Query: 62  AVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            V+FD P     + +I+P+YK NR  +      QL  +R      G+P       EADDI
Sbjct: 178 GVVFDSPGANDEKRDIWPEYKLNRQVVSYSFRNQLGWIREFCAILGLPVFIEPSTEADDI 237

Query: 121 IATYTYIAEK 130
           I +      +
Sbjct: 238 ITSMITFFRE 247


>gi|262212085|gb|ACY35659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+     +  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SHKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    + +   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNPKLLNLCCSQLAFIHDE 192


>gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246]
          Length = 209

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 17/204 (8%)

Query: 600 AEISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
           A ++  + +   N   L G +  N  SP Q+                + G       D +
Sbjct: 20  ARLADAMDAAAPNPRALPGRETRNWDSPSQVKAAF-----------AQLGFALAATDDDD 68

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            +    +P+   + E+R  +K  STY        + +   V   ++     +GR++  +P
Sbjct: 69  TLAGIAHPLGALVREYRAAAKRLSTYGRVWVEK-HVQDGAVLPSWNQLGAESGRMSCSDP 127

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           NLQ +P     G   RR F + P   L+ ADYSQ ELRI A +A+   +   + +  D+H
Sbjct: 128 NLQQVPR----GSAHRRCFTARPEHPLVKADYSQTELRIAAKVAREKVMMAAYADGRDLH 183

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAK 802
            + AA +   + + V+   R+ AK
Sbjct: 184 ALTAARVLNKDEDAVTKDDRQLAK 207


>gi|262342109|gb|ACY54565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----KLFKASPNQVMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  DVLLHGDIHQENADKIGI-SRRAVKTVTYAFLYGAGDSKLGKSFDAQLTEQQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVNAVKSKA-ESGFINLCDGRRCSVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R M+  ++S  +  L    L  IHDE
Sbjct: 157 LQGSAGVLAKRWMLINYESTRE--LCCSQLAFIHDE 190


>gi|229472521|gb|ACQ72775.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R  +   ++++D  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWTVINQQNIKDLNLCCSQLAFVHDE 192


>gi|262342145|gb|ACY54583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F   P + ++ AD + IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDS----RFRELFQPSPGQLMVGADLAGIELRMLSHF------LARYDQGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRRLVKTVTYAFLYGAGDEKIGHSYDKLLSSTAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + ++  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLDAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +++   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQHNVKQLDLCCSQLAFIHDE 192


>gi|254261387|ref|ZP_04952441.1| 38L [Burkholderia pseudomallei 1710a]
 gi|254220076|gb|EET09460.1| 38L [Burkholderia pseudomallei 1710a]
          Length = 800

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 135/392 (34%), Gaps = 64/392 (16%)

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA----------DSLPNHINKRTQ 697
           G +  ++  +E +   D P +K +    +L K   TY             +   +     
Sbjct: 379 GLYSVSSDVIEALGNRDIPFLKTLANVAKLGKDLGTYYVTTDEKTGVQKGMLTLVGDDGI 438

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            +H   +  ST+T R +  +PNLQN+        K           +++ +D++ +E+ I
Sbjct: 439 -IHQKINHTSTVTARFSEQDPNLQNVSGAGKSQVKSVFVSRWLADGQVVQSDFTSLEIFI 497

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK------------VSP-----QMRRH 800
            A ++    L +     LD+H +  ++  G+  E             V+P     + R+ 
Sbjct: 498 QAILSGCKQLIEDLRAGLDMHCVRVSQKEGITYEDAVLKCKGDPSRGVAPLPEWEKKRKG 557

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ----- 855
           AK  +F   YG     +A    +   +    IK    R+P +  Y       +++     
Sbjct: 558 AKEFSFQRAYGAGAAGIAASTGMLLEDVQALIKAEEARYPELSAYNAAKTERIKKSRRPT 617

Query: 856 -----------------NGYVETIFGRRIHYDEINSPK------SSIRNINERAAINAPI 892
                             GY  T   +   Y E  +PK         ++ +     N  +
Sbjct: 618 NNIQPHPDVKGLMCQLGKGYSITPDNKVYSYRESPAPKWLVQQGGMPQSFSPTEIANYEV 677

Query: 893 QGSAADITR-RAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           QG+  +  +    +++              ++ Q+HD L  +  +  +  +S ++   M 
Sbjct: 678 QGTGGEWAKAAMWLAIRAFYARKNFNGLALLVNQVHDALYKDAHKSVLFESSALLHACML 737

Query: 950 KA-----CLPKINLRVPLKVNIKVSNNWQEEN 976
            A           + VP+       +N  EEN
Sbjct: 738 AASDFIEWYFGWKIPVPVPSVTVHGDNMMEEN 769



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 74/210 (35%), Gaps = 24/210 (11%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDK-LVLH---RYGISMR------GFEDIMLMSYVL--- 496
             +  K  + E  L +G NIK+D    L         M          D  L  Y+L   
Sbjct: 38  FDWFTKLLK-ETTLLVGVNIKFDLLHALREPQNLDAWMEFVARGGNVWDCQLAEYLLRGM 96

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSR-KSSIPIDKISDSQVQEHAIENSN---VILQL 552
           +       +  +   +    + + +K+  ++ +    I    +  +   + +    I   
Sbjct: 97  EPTSHMLSMDEMVVSYGGNVKIDEVKALWEAGVDTPDIDKDLILRYLCGDESGLGDIGNT 156

Query: 553 WLLLRPKLIVEKLLHVYERL--DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
             +   +L   +     + +  +   +    +ME  G+ +D+ L  +++AE+ + L ++ 
Sbjct: 157 EKIFLGQLAKARKSGQVKSILLNMGSLLCTVEMERNGMYVDKALGLRLAAELEERLTAIT 216

Query: 611 ENIYDLSGE----KFNLSSPKQLGDILFTK 636
             +     +     FN S+   L  ++F  
Sbjct: 217 AELRAYLPDDCPFDFNWSNRYHLSPLIFGG 246


>gi|229472193|gb|ACQ72611.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472303|gb|ACQ72666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFIHDE 192


>gi|262342125|gb|ACY54573.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F   P + ++ AD + IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDS----RFRELFQPSPGQLMVGADLAGIELRMLSHF------LARYDQGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSTAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + ++  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLDAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +++   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQHNVKQLDLCCSQLAFVHDE 192


>gi|229472487|gb|ACQ72758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVDCR----SLFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + ++ 
Sbjct: 51  DILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D            +   A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKEAKEAGSIRSIDGRKILVD------------SPHKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQ--GIEHERYAFIHDE 191


>gi|229472429|gb|ACQ72729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGCSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I               +   A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVG------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFVHDE 192


>gi|262342131|gb|ACY54576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  ++      + F   P + ++ AD S IELR+LAH          F+  +  
Sbjct: 1   PNLAQVPSDSEFR----KLFQPTPGQIMVGADLSGIELRMLAHY------LARFDRGVYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG    ++             +S+  + 
Sbjct: 51  DILLHGDIHQVNADKIGI-SRRAVKTVTYAFLYGAGDAKIGLSYDSSLSPTRAKSKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              +     G+ + +E  K    + GYV +I  R+I  D            +   A+N  
Sbjct: 110 RTAFVEAIDGLAQLLEAIK-TASEKGYVRSIDTRKIKVD------------SPHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q  A  I +R M+  H + ++  L    L  IHDE
Sbjct: 157 LQSGAGIIAKRWMVINHANTQE--LCCSQLAFIHDE 190


>gi|229472535|gb|ACQ72782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 26/206 (12%)

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
             G + R+ F + P   ++ AD + IELR+LAH          ++       ++  +I  
Sbjct: 7   PHGDEFRKLFRATPGMVMVGADLAGIELRMLAHY------LARWDGGRYGDVLINGDIHQ 60

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADYIKRYFHRFPG 841
            N +K+    RR  KT+ ++ +YG    ++             + +  +  + +    PG
Sbjct: 61  ENADKIGI-SRRLVKTVTYAFLYGAGDQKIGLSYDQSLSADKAKKKGQEIRQAHMDAIPG 119

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
           + + +E TK      GY+  I GR I  D            +   ++N  +Q SA  I +
Sbjct: 120 LQDLVEATKK-AANRGYIRAIDGRHISVD------------SPHKSLNYLLQSSAGVIAK 166

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDE 927
           R +   H+++    +    L  IHDE
Sbjct: 167 RWLALTHEAIIRADIEAHQLAFIHDE 192


>gi|76810071|ref|YP_333053.1| hypothetical protein BURPS1710b_1649 [Burkholderia pseudomallei
           1710b]
 gi|76579524|gb|ABA48999.1| 38L [Burkholderia pseudomallei 1710b]
          Length = 774

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 135/392 (34%), Gaps = 64/392 (16%)

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA----------DSLPNHINKRTQ 697
           G +  ++  +E +   D P +K +    +L K   TY             +   +     
Sbjct: 353 GLYSVSSDVIEALGNRDIPFLKTLANVAKLGKDLGTYYVTTDEKTGVQKGMLTLVGDDGI 412

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            +H   +  ST+T R +  +PNLQN+        K           +++ +D++ +E+ I
Sbjct: 413 -IHQKINHTSTVTARFSEQDPNLQNVSGAGKSQVKSVFVSRWLADGQVVQSDFTSLEIFI 471

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK------------VSP-----QMRRH 800
            A ++    L +     LD+H +  ++  G+  E             V+P     + R+ 
Sbjct: 472 QAILSGCKQLIEDLRAGLDMHCVRVSQKEGITYEDAVLKCKGDPSRGVAPLPEWEKKRKG 531

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ----- 855
           AK  +F   YG     +A    +   +    IK    R+P +  Y       +++     
Sbjct: 532 AKEFSFQRAYGAGAAGIAASTGMLLEDVQALIKAEEARYPELSAYNAAKTERIKKSRRPT 591

Query: 856 -----------------NGYVETIFGRRIHYDEINSPK------SSIRNINERAAINAPI 892
                             GY  T   +   Y E  +PK         ++ +     N  +
Sbjct: 592 NNIQPHPDVKGLMCQLGKGYSITPDNKVYSYRESPAPKWLVQQGGMPQSFSPTEIANYEV 651

Query: 893 QGSAADITR-RAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           QG+  +  +    +++              ++ Q+HD L  +  +  +  +S ++   M 
Sbjct: 652 QGTGGEWAKAAMWLAIRAFYARKNFNGLALLVNQVHDALYKDAHKSVLFESSALLHACML 711

Query: 950 KA-----CLPKINLRVPLKVNIKVSNNWQEEN 976
            A           + VP+       +N  EEN
Sbjct: 712 AASDFIEWYFGWKIPVPVPSVTVHGDNMMEEN 743



 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 74/210 (35%), Gaps = 24/210 (11%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDK-LVLH---RYGISMR------GFEDIMLMSYVL--- 496
             +  K  + E  L +G NIK+D    L         M          D  L  Y+L   
Sbjct: 12  FDWFTKLLK-ETTLLVGVNIKFDLLHALREPQNLDAWMEFVARGGNVWDCQLAEYLLRGM 70

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSR-KSSIPIDKISDSQVQEHAIENSN---VILQL 552
           +       +  +   +    + + +K+  ++ +    I    +  +   + +    I   
Sbjct: 71  EPTSHMLSMDEMVVSYGGNVKIDEVKALWEAGVDTPDIDKDLILRYLCGDESGLGDIGNT 130

Query: 553 WLLLRPKLIVEKLLHVYERL--DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
             +   +L   +     + +  +   +    +ME  G+ +D+ L  +++AE+ + L ++ 
Sbjct: 131 EKIFLGQLAKARKSGQVKSILLNMGSLLCTVEMERNGMYVDKALGLRLAAELEERLTAIT 190

Query: 611 ENIYDLSGE----KFNLSSPKQLGDILFTK 636
             +     +     FN S+   L  ++F  
Sbjct: 191 AELRAYLPDDCPFDFNWSNRYHLSPLIFGG 220


>gi|229472223|gb|ACQ72626.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVDCR----SLFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + ++ 
Sbjct: 51  DILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D            +   A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGRKILVD------------SPHKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    +HDE
Sbjct: 158 LQSSAGVLAKRWLLITHGRLQ--GIEHERYAFVHDE 191


>gi|323359890|ref|YP_004226286.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276261|dbj|BAJ76406.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 499

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 140/438 (31%), Gaps = 79/438 (18%)

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLG 630
           ++     +   ++  G  +++ L ++    +   +      +   L     +L S  +L 
Sbjct: 99  VELHAAGLPWSVDAHGELLERQLGERRGQALPARIEEAAGRVRAALDDPAASLDSQPRLL 158

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
             L  ++                +    ++   D+P++  ++ +++L ++ +    +  +
Sbjct: 159 KSL-HRVGL-----------FVESTSRWELAEHDHPVVAPLVSYKKLMRLYTANGWTWMS 206

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750
               R  R    Y  A  +TGR AS       IP       ++R A  + P   L++AD 
Sbjct: 207 EWV-RDGRFRPVYVPAGVVTGRWASSGGGALQIPR------QLRVAVRADPGWTLVTADV 259

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
           +Q+E R+LA +A+ T L        D++  V        +E  +   R  AK      +Y
Sbjct: 260 AQLEPRVLAAMARDTALADAARR-RDLYSGV--------VEAGAVATRAEAKIAMLGAMY 310

Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH-- 868
           G               E+   + R    FP     ++       + G V T  GR     
Sbjct: 311 GA-----------TTGESGRLLPRLRRTFPRAMALVDHAARVGEEGGVVSTWLGRTSPGP 359

Query: 869 ---YDEINSPKSSIRNINE-------------RAAINAPIQGSAADITRRAMISVHKSLE 912
              +  + S                       R   N  +QG+AA+     +  +   L 
Sbjct: 360 GEAWRAVQSRAGDAEASGIDETRARRSARDRGRFTRNFVVQGTAAEWALAWLADLRGRLA 419

Query: 913 D----------------HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---L 953
                                  +   +HDE++   P       +  +  S   A     
Sbjct: 420 ALEPVDAADAAPRSGPVFGRRPHLAFFLHDEIIVHTPVVHAEAVAAAVRESAAAAGTLLF 479

Query: 954 PKINLRVPLKVNIKVSNN 971
               L  PL  ++K+   
Sbjct: 480 GSFPLDFPL--DLKIGET 495


>gi|229472449|gb|ACQ72739.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472451|gb|ACQ72740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472479|gb|ACQ72754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVDCR----SLFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
           + ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + ++ 
Sbjct: 51  NILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D            +   A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGRKILVD------------SPHKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQ--GIEHERYAFIHDE 191


>gi|229472191|gb|ACQ72610.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472285|gb|ACQ72657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472519|gb|ACQ72774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472529|gb|ACQ72779.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472531|gb|ACQ72780.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472549|gb|ACQ72789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472609|gb|ACQ72819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|270610572|ref|ZP_06221670.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270318079|gb|EFA29335.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 164

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 37/196 (18%)

Query: 225 KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
             KK  E +L     A LS  L  ++TDV + +  + L+L +    +LI +    EF + 
Sbjct: 3   GAKKLGEKLLAEKNNADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFSRYEFKRW 62

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           +N V    D      E                         +K +Q+ + S   S +  E
Sbjct: 63  LNEVMNGADSITQTTEQ-----------------------PVKMNQYQASSQDQSAV--E 97

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
            TP+              I+   Y  ++   D+ +W++KL      +    TD++D   +
Sbjct: 98  NTPK------------IQIDRTKYETLLTQADLTRWIEKLNAAKLIAVDTETDSLDYMSA 145

Query: 405 KPIAIAISTLDQKDDT 420
             + I+ +  + +   
Sbjct: 146 NLVGISFALENGEAAY 161


>gi|262342303|gb|ACY54662.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDVIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFVHDE 192


>gi|229472455|gb|ACQ72742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDADCR----ELFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + ++ 
Sbjct: 51  DILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D            +   A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGRKILVD------------SPHKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVLAKRWLLITHDRLQ--GIEHERYAFIHDE 191


>gi|151505395|gb|ABG29150.2| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 146

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
            I   +  +GI P ++   + L GD+ D + G+ GIG K A  LL E+G+LE I  N  +
Sbjct: 13  TINEFVDIYGINPNQIPDYKGLAGDTSDRLKGVAGIGPKKAVSLLNEFGSLEAIYENIGK 72

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           I  K  +E +    E+A   +KL +L  DV +   +++  +   N       L    F  
Sbjct: 73  ISGKT-KEYLENDYESAHFCKKLAILNPDVEMDTDIDNYKIV-LNRNEAEEILNEFGFYN 130

Query: 284 LIN 286
           +++
Sbjct: 131 VLD 133


>gi|229472409|gb|ACQ72719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVIDQQNIKELNLCCSQLAFVHDE 192


>gi|229472475|gb|ACQ72752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDVDCR----SLFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
           + ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + ++ 
Sbjct: 51  NILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +E  K   ++ G + +I GR+I  D            +   A+N  
Sbjct: 110 RRAYLDAIPGLEQLVEAVKKKAKEAGSIRSIDGRKILVD------------SPHKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  + +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVLAKRWLLVTHDRLQ--GIEHERYAFIHDE 191


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 85/561 (15%), Positives = 179/561 (31%), Gaps = 67/561 (11%)

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
           T       +  V  I                     +   LK+  EN     + HN  ++
Sbjct: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76

Query: 473 KLVLH---RYGISMRGFEDIMLMSY------VLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           + VL       I +  +   ++++        L +   +  ++S   +          K 
Sbjct: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136

Query: 524 RKSSIPIDKISDSQ------VQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKP 575
                  D+   +         E+   +  V  +++  L P L    ++L ++ + +   
Sbjct: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSSKEQELWYLDQTI--- 192

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
                      G  +D  L   ++  +      L++ +  L+   + L S  +  + L T
Sbjct: 193 --------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT---YGLVSSSRCLEKLKT 241

Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695
            L   +G   +     T  + L          I+      + S+      ++L   +N  
Sbjct: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD-------------------------LG 730
            +   T   L ++ TGR +      QN+P  +                          + 
Sbjct: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
             +R   I+   KKL+ AD + IE R+LA +A      + FE   D++    A  F V  
Sbjct: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421

Query: 791 EKVSPQMRRHAKTINFSIIYGISPF---RLATQLRIPRSEAADYI------KRYFHRFPG 841
            +V+   R   K +  ++ Y        ++A+   +  +  A  +      + +      
Sbjct: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481

Query: 842 IHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
                E       ++ ++ T   R +  + + +S  S + N   +A       G A    
Sbjct: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541

Query: 901 RRAMISVHKSLEDHKLATKML 921
           +R  + +    +D      ML
Sbjct: 542 KRRDVPLVYMKKDKNNLILML 562



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
             Y    + + +             +Q  + DI    M++  K+         ++L +HD
Sbjct: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630

Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           E+V E P+ +    + ++ H M         L  PLK  
Sbjct: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGL--PLKAE 666


>gi|262342133|gb|ACY54577.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F   P + ++ AD + IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDS----RFRELFQPSPGQLMVGADLAGIELRMLSHF------LARYDQGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSTAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + ++  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLDAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +++   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQHNVKQLDLCCSQLAFIHDE 192


>gi|229472571|gb|ACQ72800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 27/202 (13%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
             R  FI+ P  KL+ +D + IELR+ AH          ++     + ++  +I  VN +
Sbjct: 5   DCRSLFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYANILLNDDIHQVNAD 58

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHEY 845
           K+    RR  KT+ ++ +YG S  ++ T           R + ++  + Y    PG+ + 
Sbjct: 59  KIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQL 117

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +E  K   ++ G + +I GR+I  D            +   A+N  +Q SA  + +R ++
Sbjct: 118 VEAVKKKAKEAGSIRSIDGRKILVD------------SPHKALNFLLQSSAGVLAKRWLL 165

Query: 906 SVHKSLEDHKLATKMLLQIHDE 927
             H  L+   +  +    +HDE
Sbjct: 166 ITHDRLQ--GIEHERYAFVHDE 185


>gi|229472415|gb|ACQ72722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I               +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVG------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|262212349|gb|ACY35791.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDELLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCPQLAFVHDE 192


>gi|31711656|ref|NP_853574.1| gp14 [Enterobacteria phage SP6]
 gi|31505660|gb|AAP48753.1| gp14 [Enterobacteria phage SP6]
 gi|40787031|gb|AAR90005.1| 13 [Enterobacteria phage SP6]
          Length = 849

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 96/251 (38%), Gaps = 25/251 (9%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +    RV        T T R+     N+ NIP +      +R  FI+   K ++  D + 
Sbjct: 518 DDGEWRVPAVAISIGTSTFRMRHR--NVVNIPARG--LYPLRDLFIAGKGKMILGCDGAG 573

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +ELR+L+H        ++  +  DIH          N  K     R  AKT  ++ +YG 
Sbjct: 574 LELRVLSHFMNDPEYQEIVLHG-DIHT--------HNQLKAGLPKRDMAKTFIYAFLYGS 624

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
               LA    +   E  + + R+    P +    E       + GY++   G   H+  I
Sbjct: 625 GIANLAAVCGVTEDEMKEVVARFEIELPSLARLRENVIAAGNKFGYLQAPDG---HWGRI 681

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML------LQIHD 926
                 ++       +N  +Q + +   + A++     +    +A   L        +HD
Sbjct: 682 RMSGGELKE---HTMLNVLLQMTGSLCMKYALVKAFAVMRREGVALDNLGNPCGVANVHD 738

Query: 927 ELVFEVPEEEI 937
           E+  EVPEEE+
Sbjct: 739 EIQMEVPEEEV 749


>gi|109289266|gb|ABG29119.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|109289269|gb|ABG29121.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|109289272|gb|ABG29123.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
 gi|109289275|gb|ABG29125.1| DNA polymerase I 5'-3' exonuclease domain [Mycoplasma bovis]
          Length = 149

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
            I   +  +GI P ++   + L GD+ D + G+ GIG K A  LL E+G+LE I  N  +
Sbjct: 16  TINEFVDIYGINPNQIPDYKGLAGDTSDRLKGVAGIGPKKAVSLLNEFGSLEAIYENIGK 75

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
           I  K  +E +    E+A   +KL +L  DV +   +++  +   N       L    F  
Sbjct: 76  ISGKT-KEYLENDYESAHFCKKLAILNPDVEMDTDIDNYKIV-LNRNEAEEILNKFGFYN 133

Query: 284 LIN 286
           +++
Sbjct: 134 VLD 136


>gi|167600464|ref|YP_001671963.1| DNA polymerase [Pseudomonas phage LUZ19]
 gi|161168327|emb|CAP45491.1| DNA polymerase [Pseudomonas phage LUZ19]
          Length = 807

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 127/393 (32%), Gaps = 82/393 (20%)

Query: 660 INCGDNPIIKNILEWRQLSK------IKSTY--------ADSLPNHINKRTQRVHTFYSL 705
           +        K ++   +L K      I  TY           +  +++     +H   + 
Sbjct: 408 LEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDDGI-IHHSLNT 466

Query: 706 ASTMTGRLASLEPNLQNIPIKTDL----GQKIRRAFISPPT--KKLISADYSQIELRILA 759
            +T T RL+S  PNLQ +P K +     G +++  F+S       +   DY+ +E+ +LA
Sbjct: 467 TATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGADGMIGETDYTALEVVMLA 526

Query: 760 HIAKITPLYQVFENSLDIHR-MVAAE---IFGVNIEKVSP--------------QMRRHA 801
            ++K   L        D+H   +A +     G + +++                Q R++ 
Sbjct: 527 ALSKDRNLLAKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPWHGRMMQARKNI 586

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE- 860
           K   FS  YG S   +A        EA +++      FP    + +  ++       V  
Sbjct: 587 KPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAEATSLVMY 646

Query: 861 ---------------------------------TIFGRRIHYDEINSPKSSIRNINERAA 887
                                            T +  R         + ++ +  +   
Sbjct: 647 KAEDQMPAGAFSEMGPDGNWRQYRRGFWQAPGGTCYSFRQQERWDKEQRKTVMDFKDTQI 706

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHK---LATKMLLQIHDELVFEVPEEEITTASQII 944
            N   QG A  +   ++  + + +       +   ++  +HD +  +  ++     ++ +
Sbjct: 707 ANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVNKGV 766

Query: 945 VHSMEKACLPKIN-L-----RVPLKVNIKVSNN 971
              M  A       L      VP     ++  N
Sbjct: 767 RDIMADAARYMSERLGYDIADVPFPAVAEMGPN 799


>gi|229472181|gb|ACQ72605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-FRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLLAAIKK-ASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFIHDE 192


>gi|33300830|ref|NP_877458.1| putative DNA directed DNA polymerase [Pseudomonas phage phiKMV]
 gi|195546662|ref|YP_002117743.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|195546724|ref|YP_002117802.1| putative exonuclease [Pseudomonas phage PT2]
 gi|33284801|emb|CAD44210.1| putative DNA directed DNA polymerase [Enterobacteria phage phiKMV]
 gi|158187623|gb|ABW23100.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|165880733|gb|ABY70988.1| putative exonuclease [Pseudomonas phage PT2]
          Length = 807

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 127/393 (32%), Gaps = 82/393 (20%)

Query: 660 INCGDNPIIKNILEWRQLSK------IKSTY--------ADSLPNHINKRTQRVHTFYSL 705
           +        K ++   +L K      I  TY           +  +++     +H   + 
Sbjct: 408 LEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDDGI-IHHSLNT 466

Query: 706 ASTMTGRLASLEPNLQNIPIKTDL----GQKIRRAFISPPT--KKLISADYSQIELRILA 759
            +T T RL+S  PNLQ +P K +     G +++  F+S       +   DY+ +E+ +LA
Sbjct: 467 TATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGADGMIGETDYTALEVVMLA 526

Query: 760 HIAKITPLYQVFENSLDIHR-MVAAE---IFGVNIEKVSP--------------QMRRHA 801
            ++K   L        D+H   +A +     G + +++                Q R++ 
Sbjct: 527 ALSKDRNLLAKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPWHGRMMQARKNI 586

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE- 860
           K   FS  YG S   +A        EA +++      FP    + +  ++       V  
Sbjct: 587 KPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAEATSLVMY 646

Query: 861 ---------------------------------TIFGRRIHYDEINSPKSSIRNINERAA 887
                                            T +  R         + ++ +  +   
Sbjct: 647 KAEDQMPAGAFSEMGPDGNWRQYRRGFWQAPGGTCYSFRQQERWDKEQRKTVMDFKDTQI 706

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHK---LATKMLLQIHDELVFEVPEEEITTASQII 944
            N   QG A  +   ++  + + +       +   ++  +HD +  +  ++     ++ +
Sbjct: 707 ANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVNKGV 766

Query: 945 VHSMEKACLPKIN-L-----RVPLKVNIKVSNN 971
              M  A       L      VP     ++  N
Sbjct: 767 RDIMADAARYMSERLGYDIADVPFPAVAEMGPN 799


>gi|77937070|gb|ABB05515.1| exodeoxyribonuclease IX [Xenorhabdus nematophila]
          Length = 101

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 1/99 (1%)

Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
             V +++G+ P ++     L G S   IPGI GIG KTAA LLQ+ G+L+N+  +    +
Sbjct: 1   PFVQQEFGVSPNQLPDYWGLAGISSSKIPGIQGIGPKTAATLLQQTGSLDNLFQHLEN-Q 59

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             K R+ +  + E A +SR++  L+TD+ +   L+ L L
Sbjct: 60  PDKWRKKLESHKEMAYISREVASLKTDLSLQGNLQQLRL 98


>gi|108861996|ref|YP_654112.1| 13 [Enterobacteria phage K1-5]
 gi|40787082|gb|AAR90053.1| 13 [Enterobacteria phage K1-5]
          Length = 846

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 113/349 (32%), Gaps = 84/349 (24%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +    RV        T T R+     N+ NIP +      +R  FI+   K ++  D + 
Sbjct: 517 DDGEWRVPAIAISIGTSTFRMRHR--NVVNIPARG--LYPLRDLFIAGKGKLILGCDGAG 572

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +ELR+L+H        ++  +  DIH          N  K     R  AKT  ++ +YG 
Sbjct: 573 LELRVLSHFMNDPEYQEIVLHG-DIHT--------HNQMKAGLPKRDMAKTFIYAFLYGS 623

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
               LA    +   E  + + R+    P +    E       + GY++   G   H+  I
Sbjct: 624 GIANLAAVCGVTEEEMEEVVARFEVELPSLARLRENVIAQGNKFGYLQAPDG---HWGRI 680

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKM-----LLQIHD 926
                 ++       +N  +Q + +   + A++     +    +A   M     +  +HD
Sbjct: 681 RMSGGELKE---HTMLNVLLQMTGSLCMKYALVRAFAVMRKEGVALDSMGNPCGIANVHD 737

Query: 927 ELVFEVPEEEI--------------TTASQIIVHS---------------MEKAC----- 952
           E+  EVPE+E+               T    +                  M  A      
Sbjct: 738 EIQMEVPEDEVLYLNYDLPFTLEGFETEKAAVKAVFDAEEKRVHVDSEGRMWSAANLVSV 797

Query: 953 -------------------------LPKINLRVPLKVNIKVSNNWQEEN 976
                                       + +R P+    K+  +W+E +
Sbjct: 798 DAGVLHCQRRYHRAGHIIADAMTWAGQYLKMRCPMAGEYKIGASWKETH 846


>gi|229472267|gb|ACQ72648.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G++E I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKPLAAIKK-ASERGFIEAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   +++++  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKELNLCCSQLAFIHDE 192


>gi|229073437|ref|ZP_04206573.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           cereus F65185]
 gi|228709744|gb|EEL61782.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           cereus F65185]
          Length = 464

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 145/411 (35%), Gaps = 64/411 (15%)

Query: 367 SYTKIVNTKDIQQWVQK------LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           +Y  I   +  ++++ K      L +         +   + F    I+I I  +D     
Sbjct: 58  NYYLIHTPEQFKEFITKYKVYKTLHSQAYTFIDTKSTGSNPFKDSIISITIGFMDNS-FF 116

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-- 478
              ++     LS +TS          +  +  L    E +  L I  N K     L+   
Sbjct: 117 YIPIKPFKHRLSQNTS------TLSLEYTMKKLSPLLEKDTLL-ILSNSKQHIHALYNWC 169

Query: 479 -YGISMRGFEDIMLMSYVLDSGRSS--------HDIASIAQKWLSYTRKEILKSRKSSIP 529
            + I+   F D  + + +L+             + +  +  K       +  K       
Sbjct: 170 NFDITYNIFWDTEIAANLLNENHPKGVKEWYKEYVLPRLISKGTILNTMDSKKYMFEKTL 229

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLR-----PKLIVEKLLHVYERLDKPMIDVVSQME 584
            D++        A  +  ++  ++   +     PK  +  +  ++  ++ P+I V++  E
Sbjct: 230 YDQLQHHVATYFACYDIFMLKSVFEYQKRIFENPKFNLVHIYKLFREIEMPLIAVLTTAE 289

Query: 585 ITGIQIDQDLL-KQVSAEISKNLLSLEENIYDLSGEK----------------------- 620
             GI+I ++ L   V   +   L S+++ I +  G                         
Sbjct: 290 RKGIKISEEFLSNDVKQILQAKLQSVKKEILNHLGSTITLNNCMHPPKQQNKYNSVNKLT 349

Query: 621 ---FNLSSPKQLGDILF-TKLKFPSGAKTKTG-----QWKTTAQDLEQINCGDNPIIKNI 671
              FN++SP  L   L+          +   G         T +     N   +P+I  I
Sbjct: 350 STLFNINSPAHLAQKLYIDNAILKPIMEYDKGCKSLISKLKTDRKTLIRNLSMHPVIPLI 409

Query: 672 LEWRQLSKIKSTYADSLPNHINKR-TQRVHTFYSLASTMTGRLASLEPNLQ 721
           LE+R+L K+ S++ +SLP         ++H  Y+   T TGR++   PNL+
Sbjct: 410 LEYRRLVKLISSFCNSLPKEQQGTIDNKIHPIYNSVGTKTGRMSCSSPNLK 460


>gi|228907509|ref|ZP_04071366.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           thuringiensis IBL 200]
 gi|228852001|gb|EEM96798.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           thuringiensis IBL 200]
          Length = 464

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 150/415 (36%), Gaps = 68/415 (16%)

Query: 365 NDSYTKIVNTKDIQQWVQK------LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
             +Y  I   +  ++++ K      L +         +   + F    I+I I  +D   
Sbjct: 56  PSNYYLIHTPEQFEEFITKYKVYKTLHSQAYTFIDTKSTGFNPFKDSIISITIGFMDN-C 114

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                ++     LS H S          +  +  L    E +  L I  N K     L+ 
Sbjct: 115 FFYIPIKPFKHGLSQHIS------TLSLEYTMKKLSPLLEKDTLL-ILSNSKQHIHALYN 167

Query: 479 ---YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL--------SYTRKEILKSRKSS 527
              + I+   F D  + + +L+       +    ++++        +       K     
Sbjct: 168 WCDFDITYNIFWDTEIAANLLNEN-HPKGVKEWYKEYVLPRLISNETILNTIDRKKYMIE 226

Query: 528 IPI-DKISDSQVQEHAIENSNVILQLWLLLR-----PKLIVEKLLHVYERLDKPMIDVVS 581
             + D++        A  +  ++  ++   +     PK  +  +  ++  ++ P+I V++
Sbjct: 227 KTLYDQLQHHVATYFACYDIFMLKSVFEYQKRIFENPKFNLGPIYKLFREIEMPLIAVLT 286

Query: 582 QMEITGIQIDQDLL-KQVSAEISKNLLSLEENIYDLSGEK-------------------- 620
             E  GI+I ++ L   V   +     S+++ I +  G                      
Sbjct: 287 TAERKGIKISEEFLSNDVKQILQTKFQSVKKEILNYLGSTITLNNCMHPPKQQNKYKGAN 346

Query: 621 ------FNLSSPKQLGD-------ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
                 FN++SP  L         IL   +++    K+   + K T +     N   +P+
Sbjct: 347 KLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKSCKSVISKLK-TDRKTLIRNLSKHPV 405

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKR-TQRVHTFYSLASTMTGRLASLEPNLQ 721
           I  ILE+R+L K+ S++ DSLP         ++H  Y+   T TGR++   PNL+
Sbjct: 406 IPLILEYRRLVKLISSFCDSLPKEQQGTIDNKIHPIYNSVGTKTGRMSCSSPNLK 460


>gi|229472483|gb|ACQ72756.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLDLCCSQLAFIHDE 192


>gi|167583608|ref|YP_001671798.1| DNA polymerase-like protein [Enterobacteria phage phiEco32]
 gi|164375446|gb|ABY52854.1| DNA polymerase-like protein [Enterobacteria phage phiEco32]
          Length = 614

 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 104/259 (40%), Gaps = 26/259 (10%)

Query: 734 RRAFISPPTKKLISADYSQIELRILAHI---AKITPLYQVFENSLDIHRMVA-------- 782
            + +I    +  +  D S +ELR+LAH         L +  E +    + +A        
Sbjct: 360 YKYYIPAGKEVFLGYDGSGLELRMLAHYLIKECRDMLAEAIEENNPAKKALAERGLASAI 419

Query: 783 --------AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834
                    +I   N +      R +AKT  ++  YG    +L + +     E +    R
Sbjct: 420 MYRDILLEGDIHSHNQKLAGLPTRDNAKTFIYAFNYGAGDAKLGSIVGGGADEGSVMRAR 479

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
           +    P I   I++      Q GY+  + GR+     I   + +   +    A+N  +Q 
Sbjct: 480 FLAENPCIAILIDRMTEKAAQ-GYLIGVDGRK-----ITMRRDATGKVMVHKALNTLLQC 533

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
           + A + + AM+ ++K +E  K+    ++ +HDE  F V   ++    +     ++KA   
Sbjct: 534 AGAVVMKYAMMFLNKWIEKDKVRCAKVIDMHDEGQFSVNRNDVQKLKEHTELCVKKAG-E 592

Query: 955 KINLRVPLKVNIKVSNNWQ 973
            +N+  PL  + ++  NW 
Sbjct: 593 YLNMECPLASDCQIGLNWM 611


>gi|47934642|gb|AAT39759.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D +    + A ++  + S+E+ +             + +G++       FNL+
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSEKTGKQLKDKVTIFNLA 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L +     T+ GQ       LE I   D P  + I E+  L K +   
Sbjct: 61  SRKQIAERL-QGLGWTPTKHTEKGQPIVDEGTLEDI---DIPQAQLIAEYLMLQK-RVGM 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD-LGQKIRRAFISPPTK 743
            D+    ++++T RVH       T+TGR+A   PNL  +P  T   G++IR  +      
Sbjct: 116 IDAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKPYGEQIRSLWTVDDGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L   D S IELR LAH  +     +   N  DIH 
Sbjct: 176 VLCGTDLSGIELRCLAHYMQDDEWTEELLNG-DIHT 210


>gi|68069867|ref|XP_676845.1| DNA polymerase 1 [Plasmodium berghei strain ANKA]
 gi|56496719|emb|CAH97694.1| DNA polymerase 1, putative [Plasmodium berghei]
          Length = 842

 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 16/176 (9%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E+       II NI  +R+  K+   Y ++LP HI K T+++H  ++     TGRL+  +
Sbjct: 669 EKEKEKIKQIINNIKLYRESKKLFQNYIENLPKHIQKNTKKIHCNFNQLGASTGRLSCDQ 728

Query: 718 PNLQNIPIKTDLGQKIRRAFISPP------------TKKLISADYSQIELRILAHIAKIT 765
           PNLQNI  K      ++   + P              K L++ DY Q+EL ++A+++   
Sbjct: 729 PNLQNIHSKFRCTISLKFNELKPTSIQKQDIKNKSVNKNLLTFDYKQMELFVMAYLSFDN 788

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821
            L ++  NS D+       +F  N  +V+ ++RR  KT+ + I+YG S   LA  L
Sbjct: 789 QLLKMLNNS-DVFVET-KVLFNTN--EVTKELRRMTKTVIYGILYGQSENGLAKNL 840



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVY 569
           K ++  +K +  +++S   I +I++  +  + I  +  ++ L+  L  +L     +L +Y
Sbjct: 396 KHINNIKKIVFGNKRS---IYEITEEDMMFYCISRNIFLIILFNYLINQLKNNMNILTLY 452

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
            ++++P+I  +S++E  GI ++Q  ++++    +  L+  ++ I +L G   NL+S KQ+
Sbjct: 453 IKIEQPLIFCISEIEKEGIYLNQKKIQEIQNNSNNPLI-YKKQIEELCGYDINLNSSKQV 511

Query: 630 GDILFTKL 637
             +L   L
Sbjct: 512 SSLLSKAL 519


>gi|229472255|gb|ACQ72642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      + F + PT  ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----KLFRASPTLVMVGADLAGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR--IPRSEA----ADY 831
             ++  +I   N +K+    R+  KT+ ++ +YG    +L       +   +A     + 
Sbjct: 51  DVLLNGDIHQENADKIGI-SRKQVKTVTYAFLYGAGDAKLGRSYDPQLSEKDAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++GY+    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGYINLCDGRRCSVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H++   H+L    L  IHDE
Sbjct: 157 LQGSAGILAKRWLLINHEN--PHELCCSQLAFIHDE 190


>gi|262342141|gb|ACY54581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   D  Q     F++ P + ++ AD S IELR+LAH          F+     
Sbjct: 1   PNLAQVPSDKDFRQ----LFMATPGQIMVGADLSGIELRMLAHY------LSRFDGGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  EILLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGRSYDPQLTEKEAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+   +   K+   + GY+    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLETLVTAVKSKA-ELGYINLCDGRRCAVD------------GSHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 157 LQGSAGVLAKRWLLINHNNTTE--LCCSQLAFIHDE 190


>gi|262212089|gb|ACY35661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212167|gb|ACY35700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCPQLAFIHDE 192


>gi|157311100|ref|YP_001469095.1| gp096 [Lactococcus phage KSY1]
 gi|108861440|gb|ABG21639.1| gp096 [Lactococcus phage KSY1]
          Length = 895

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 86/434 (19%), Positives = 158/434 (36%), Gaps = 63/434 (14%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +  I T  +D F  K   +   T D+      +  TI                    E +
Sbjct: 20  AADIETTGLDYFTEKITLVQYGTDDEHQQWYTEEPTI--------------------EDI 59

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             LKK           HN K+D   +   +G+ +    D M++ + L     S  +   A
Sbjct: 60  KELKK------RTLFWHNGKFDTKFIAYHFGVMLPIHGDSMVLLHAL-GYSDSLSLKVAA 112

Query: 510 QKWLSYTRKEILKSRKSSI-PIDKISDSQVQEHAIENSNVILQLWLLLRPKL-------- 560
            K L     +I    K S  P ++ S  +  E+ +++      L  LL   +        
Sbjct: 113 AKLLGVENWDIEHDLKLSKGPDEEASKLKFFEYGLKDVKYTYALMRLLLTGVNSQSDDPE 172

Query: 561 ------IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
                  ++ L +     +         +E+TG  +    + +    I   +  +E    
Sbjct: 173 DSKNFNTIDDLQYNVYNNELKAYSAFRYIEMTGTPL--GDMSKSQDAIDGKIEDIENKW- 229

Query: 615 DLSGEKFN-LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
              G +F+ ++S  ++G +L   L          G+   T + L +          ++ E
Sbjct: 230 ---GFRFDWVNSSDKVGALL--SLVDKRLKPGDNGKISVTKEVLTKHIQEVGDFAYDVKE 284

Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
            R+L K+   + DS          R+   +++  T TGR +S  PNLQ +P  +    ++
Sbjct: 285 VRKLKKLIQFF-DSWNKL--GHDGRIFPQFNIT-TKTGRTSSSNPNLQQVPQDS----RV 336

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI--- 790
           R    +P   K I  DYSQ+ELR  A+ A+   + + ++N  D+H      + G      
Sbjct: 337 RNIIAAPKGMKFIECDYSQLELRCAAYCAQEPAMMEAYKNGADLHTKTWESMNGRPFSDD 396

Query: 791 EKVSPQMRRHAKTI 804
             ++ + R  AK  
Sbjct: 397 HDMAKRERTIAKAC 410



 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 94/208 (45%), Gaps = 22/208 (10%)

Query: 784 EIFGVNIEKVSPQMRRHAKT-----INFSIIYGISPFRL------ATQLRIPRSEAADYI 832
           +++ VN+   +  +R + K       NFS++YG     L         + + + +A ++ 
Sbjct: 688 DVYCVNVPTHNIVIRHNDKVSIQGNCNFSLLYGAQSKTLRDYARTNMGIDMSQEDADEFH 747

Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
           + +F  +PG+  +    K F+ ++GY+++  GRR +   + S     +    R +IN P+
Sbjct: 748 RAFFESYPGLVSWHNACKRFLDEHGYIQSPLGRRRYLPTVYSKDWGEKESAYRRSINTPV 807

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS-QIIVHSMEKA 951
           QG  +DI   AM ++ +   ++     +   IHD ++    E++    +  II   ME  
Sbjct: 808 QGLGSDICVSAMTTILQH-PEYGKTFFVHGTIHDAILVTAYEDQAEHVAYDIIKKIMEHP 866

Query: 952 CLPKINLRVP------LKVNIKVSNNWQ 973
            +     ++P      L  +  V+++W 
Sbjct: 867 PILD---KLPTTNGLYLIADADVTDSWG 891


>gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010]
          Length = 687

 Score =  108 bits (270), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 92/603 (15%), Positives = 184/603 (30%), Gaps = 137/603 (22%)

Query: 458 ENEHFLKIGHNIKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            +   L   HN  +D+ VL     R    +  + D M+ +    +      +  + +   
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQAL---AHGLPGSLGELCEVLG 118

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYER 571
               K   K  K+ I +      +  +     S    + W        L +E +  VY+R
Sbjct: 119 VPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKR 178

Query: 572 L--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           L        +  +     Q+   G+ +D +L +     + +    L +   +++  +   
Sbjct: 179 LPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQA 238

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           ++ +   D L   +    G +    Q  T  + +   +   + + + +    Q S   ++
Sbjct: 239 ATQR---DALIKHIVESYGVELPDMQRSTLERRIADPDLP-SAVKELLAIRLQASTTSTS 294

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI---------- 733
              +L   ++   +   T     ++ TGR A      QN+P  +   ++I          
Sbjct: 295 KYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAG 354

Query: 734 -----------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--- 773
                            R   I+P  KKL+ +D S IE R+LA +A        F     
Sbjct: 355 CADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDA 414

Query: 774 --SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLRIP-- 824
               D++++  A+ F +  + V   MR+  K +   + YG        F L   L +   
Sbjct: 415 GTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDEL 474

Query: 825 -------------RSEAADYIKR-----------------------YFHRFPGIHEY--- 845
                        R   + Y +                        +    P   ++   
Sbjct: 475 ANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVFIACDSLKRLWRRAHPATCDFWYE 534

Query: 846 IEKTKNFVRQN-------GYV---ETIFGRRIHYDEINS--------------------- 874
           +E+T              GY+         RI      +                     
Sbjct: 535 LERTVRTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594

Query: 875 -PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
             K           +    Q +A DI    M  +  +         ++L +HDE++ E P
Sbjct: 595 SRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDA------GYSIVLTVHDEVITEAP 648

Query: 934 EEE 936
           + E
Sbjct: 649 DTE 651


>gi|167821768|ref|ZP_02453448.1| 38L [Burkholderia pseudomallei 91]
          Length = 808

 Score =  108 bits (270), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/392 (16%), Positives = 131/392 (33%), Gaps = 64/392 (16%)

Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA----------DSLPNHINKRTQ 697
           G +  +++ +E +   D P +K +    +L K   TY             +   +     
Sbjct: 387 GLYSVSSEVIEALGNRDIPFLKTLANVAKLGKDLGTYYITTDEKTGQQKGMLTLVGDDGI 446

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
            +H   +  ST+T R +  +PNLQN+        K           +++ +D++ +E+ I
Sbjct: 447 -IHQKINHTSTVTARFSEQDPNLQNVSGAGKSQVKSVFVSRWLADGQVVQSDFTSLEIFI 505

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS-----------------PQMRRH 800
            A +     L       LD+H +  ++  G+  E                     + R+ 
Sbjct: 506 QAILTGCKQLIDDLRAGLDMHCVRVSQKEGITYEDAVLKCKGDPSRGIAPLPDWEKKRKG 565

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ----- 855
           AK  +F   YG     +A    +   +    IK    R+P +  Y       +++     
Sbjct: 566 AKEFSFQRAYGAGAAGIAASTGMLLEDVQALIKAEEVRYPELSAYNAAKTERIKKSRRPT 625

Query: 856 -----------------NGYVETIFGRRIHYDEINSPKSSIR------NINERAAINAPI 892
                             GY  T   +   Y E  +P   +R      + +     N  +
Sbjct: 626 NNIQPHPEVKGLMCQLGKGYSVTPDNKVYSYRESPAPAWLVRQGGMPQSFSPTEIANYEV 685

Query: 893 QGSAADITR-RAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           QG+  +  +    +++              ++ Q+HD L  +  +  +  +S ++   M 
Sbjct: 686 QGTGGEWAKAAMWLAIRAFYARKNFGGLALLVNQVHDALYKDAHKSVLFESSALLHACML 745

Query: 950 KA-----CLPKINLRVPLKVNIKVSNNWQEEN 976
            A           + VP+       +N  EEN
Sbjct: 746 AASDFMEWYFGWKIPVPVPSVTVHGDNMMEEN 777



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 74/210 (35%), Gaps = 24/210 (11%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDK-LVLH---RYGISMR------GFEDIMLMSYVL--- 496
             +  K  ++   L +G NIK+D    L         M          D  L  Y+L   
Sbjct: 46  FDWFTKLLKDTTLL-VGANIKFDLLHALREPQNLDAWMEFVARGGNVWDCQLAEYLLRGM 104

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSR-KSSIPIDKISDSQVQEHAIENSN---VILQL 552
           +       +  +   +    + + +K+  ++ +    I    +  +   + +    I   
Sbjct: 105 EPTSHMLSMDEMVVSYGGNVKIDEVKALWEAGVDTPDIDKDLLLRYLCGDESGLGDIGNT 164

Query: 553 WLLLRPKLIVEKLLHVYERL--DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
             +   +L   +     + +  +   +    +ME  G+ +D+ L  +++AE+ + L ++ 
Sbjct: 165 EKIFLGQLAKARKSGQVKSILLNMGSLLCTVEMERNGMYVDKALGLRLAAELEERLTAIT 224

Query: 611 ENIYDLSGE----KFNLSSPKQLGDILFTK 636
             +     +     FN S+   L  ++F  
Sbjct: 225 AELRAYLPDDCPFDFNWSNRYHLSPLIFGG 254


>gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 687

 Score =  108 bits (270), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 92/603 (15%), Positives = 184/603 (30%), Gaps = 137/603 (22%)

Query: 458 ENEHFLKIGHNIKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            +   L   HN  +D+ VL     R    +  + D M+ +    +      +  + +   
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQAL---AHGLPGSLGELCEVLG 118

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYER 571
               K   K  K+ I +      +  +     S    + W        L +E +  VY+R
Sbjct: 119 VPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKR 178

Query: 572 L--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           L        +  +     Q+   G+ +D +L +     + +    L +   +++  +   
Sbjct: 179 LPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQA 238

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           ++ +   D L   +    G +    Q  T  + +   +   + + + +    Q S   ++
Sbjct: 239 ATQR---DALIKHIVESYGVELPDMQRSTLERRIADPDLP-SAVKELLAIRLQASTTSTS 294

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI---------- 733
              +L   ++   +   T     ++ TGR A      QN+P  +   ++I          
Sbjct: 295 KYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAG 354

Query: 734 -----------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--- 773
                            R   I+P  KKL+ +D S IE R+LA +A        F     
Sbjct: 355 CADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDA 414

Query: 774 --SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLRIP-- 824
               D++++  A+ F +  + V   MR+  K +   + YG        F L   L +   
Sbjct: 415 GTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDEL 474

Query: 825 -------------RSEAADYIKR-----------------------YFHRFPGIHEY--- 845
                        R   + Y +                        +    P   ++   
Sbjct: 475 ANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVFIACDSLKRLWRRAHPATCDFWYE 534

Query: 846 IEKTKNFVRQN-------GYV---ETIFGRRIHYDEINS--------------------- 874
           +E+T              GY+         RI      +                     
Sbjct: 535 LERTVRTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594

Query: 875 -PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
             K           +    Q +A DI    M  +  +         ++L +HDE++ E P
Sbjct: 595 SRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDA------GYSIVLTVHDEVITEAP 648

Query: 934 EEE 936
           + E
Sbjct: 649 DTE 651


>gi|47097719|ref|ZP_00235222.1| 5'-3' exonuclease family protein [Listeria monocytogenes str.
          1/2a F6854]
 gi|47013904|gb|EAL04934.1| 5'-3' exonuclease family protein [Listeria monocytogenes str.
          1/2a F6854]
          Length = 96

 Score =  108 bits (270), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 2  QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
          +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++    +S  
Sbjct: 3  ENRENLLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGVQGFMRHMFAAIR----QSNP 58

Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP 96
          +H  + +D  + TFRNE+Y  YKA R   PE ++PQ  
Sbjct: 59 THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFD 96


>gi|262212223|gb|ACY35728.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+ AKT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLAKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472219|gb|ACQ72624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P   +      R F + P + ++ AD S IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDAEFR----RLFKASPGQIMVGADLSGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG    +L             + +  + 
Sbjct: 51  DVLLHGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + +   K+   ++G++    GRR   D                A+N  
Sbjct: 110 RQAYMDAVPGLEKLVTAVKSKA-ESGFINLCDGRRCTVD------------GAHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           + GSA  + +R ++  H +  +  L    L  IHDE
Sbjct: 157 LHGSAGVLAKRWLLINHNNTRE--LCCSQLAFIHDE 190


>gi|47934688|gb|AAT39782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGE-------KFNLS 624
           E  G ++D    + + A +   +  +E  + ++            +G+       +FN  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEIFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S  Q+GD L   L +     T+TG+ K     LE I   D P  + I E+  + K +   
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILESI---DLPEAQLIAEYLMIQK-RVGL 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F      
Sbjct: 116 IDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFTVEDGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +LI  D S IELR LAH  +     +   N  DIH 
Sbjct: 176 RLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|47934622|gb|AAT39749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D +    + A ++  + S+E+ +             D +G++       FNL+
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L +     T+ GQ       LE I   D P  + I E+  L K +   
Sbjct: 61  SRKQIAERL-QGLGWTPTKHTEKGQPIVDEGTLEDI---DIPQAQLIAEYLMLQK-RVGM 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD-LGQKIRRAFISPPTK 743
            D+    ++++T RVH       T+TGR+A   PNL  +P  T   G++IR  +      
Sbjct: 116 IDAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKPYGEQIRSLWTVDDGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L   D S IELR LAH  +     +   N  DIH 
Sbjct: 176 VLCGTDLSGIELRCLAHYMQDDEWTEELLNG-DIHT 210


>gi|47934616|gb|AAT39746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 211

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D +    + A ++  + S+E+ +             D +G++       FNL+
Sbjct: 2   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 61

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L +     T+ GQ       LE I   D P  + I E+  L K +   
Sbjct: 62  SRKQIAERL-QGLGWTPTKHTEKGQPIVDEGTLEDI---DIPQAQLIAEYLMLQK-RVGM 116

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD-LGQKIRRAFISPPTK 743
            D+    ++++T RVH       T+TGR+A   PNL  +P  T   G++IR  +      
Sbjct: 117 IDAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKPYGEQIRSLWTVDDGN 176

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L   D S IELR LAH  +     +   N  DIH 
Sbjct: 177 VLCGTDLSGIELRCLAHYMQDDEWTEELLNG-DIHT 211


>gi|262212191|gb|ACY35712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRVLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212221|gb|ACY35727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +KV    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKVGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|260906871|ref|ZP_05915193.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brevibacterium linens BL2]
          Length = 613

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 112/354 (31%), Gaps = 58/354 (16%)

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ-VSAEISKNLLSLEENIYDLSGEKFNLS 624
           L +    +     V ++M+  G+  D     + ++ E+        +    L+       
Sbjct: 175 LRLLLAAESAGGLVAAEMQAAGVPWDIAEHDRILAEELGPRPARDAKPAKMLA------- 227

Query: 625 SPKQLGDILFT-KLKFPSGAKT----KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
              Q+   L   +    S  K             +    ++   ++  I  +LE+++ S+
Sbjct: 228 VADQVRAALGDPRANLDSHVKLLHSLHAAGINVASTSKWELQESNHAAIAPLLEYKKQSR 287

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           + S    +  +       R    Y     +TGR A+       IP       ++R A  +
Sbjct: 288 LLSANGWAWLDEWVSEG-RYRPVYVPGGVVTGRWAASGGGALQIPR------QLRPALRA 340

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            P  +LISAD +Q+E R LA ++    + +      D++  +        +++     R+
Sbjct: 341 DPGWRLISADVAQLEPRALAAMSGDRAMAEAGR-GRDLYSGL--------VDEGIVATRQ 391

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK      +YG               ++   + R    FP     ++         G V
Sbjct: 392 EAKIAVLGAMYGS-----------TTGDSGRLVPRLRTSFPAAMGLVDSAAEVGAAGGVV 440

Query: 860 ETIFGRRIHYDEIN----------------SPKSSIRNINE--RAAINAPIQGS 895
            T  GR                            + R   +  R   N  +QG+
Sbjct: 441 STWLGRSSPVPGEGWRRVQSAANQFDATPADENRARRAAGDQGRFTRNFVVQGT 494


>gi|47934690|gb|AAT39783.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934692|gb|AAT39784.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934700|gb|AAT39788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934702|gb|AAT39789.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score =  108 bits (269), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGE-------KFNLS 624
           E  G ++D    + + A +   +  +E  + ++            +G+       +FN  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S  Q+GD L   L +     T+TG+ K     LE I   D P  + I E+  + K +   
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILESI---DLPEAQLIAEYLMIQK-RVGL 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F      
Sbjct: 116 IDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFTVEDGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +LI  D S IELR LAH  +     +   N  DIH 
Sbjct: 176 RLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
          Length = 687

 Score =  108 bits (269), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 89/604 (14%), Positives = 177/604 (29%), Gaps = 139/604 (23%)

Query: 458 ENEHFLKIGHNIKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            +   L   HN  +D+ VL     R    +  + D M+ +    +      +  + +   
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQAL---AHGLPGSLGELCEILG 118

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYER 571
               K   K  K+ I +      +  +     S    + W        L +E +  VY+R
Sbjct: 119 VPQDKAKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKR 178

Query: 572 L--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           L        +  +     Q+   G+ +D  L +     + +    L +   +++  +   
Sbjct: 179 LPKWNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQA 238

Query: 624 SSPKQ-LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682
           ++ +  L   +            ++   +  A         +      +    Q S   +
Sbjct: 239 ATQRDALIKHIVESYGVELPDMQRSTLERRIADPHLPSAVKE-----LLAIRLQASTTST 293

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI--------- 733
           +   +L   ++   +   T     ++ TGR A      QN+P  +   ++I         
Sbjct: 294 SKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKA 353

Query: 734 ------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-- 773
                             R   I+P  KKL+ +D S IE R+LA +A        F    
Sbjct: 354 GCAGLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYD 413

Query: 774 ---SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLRIP- 824
                D++++  A+ F +  + V   MR+  K +   + YG        F L   L +  
Sbjct: 414 AGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDE 473

Query: 825 --------------RSEAADYIKR-----------------------YFHRFPGIHEY-- 845
                         R   + Y +                        +    P   ++  
Sbjct: 474 LANAALPNIPRDVIREAKSWYNESVKHKSTFGLSERVFIACDSLKRLWRRAHPATCDFWY 533

Query: 846 -IEKTKNFVRQN-------GYV---ETIFGRRIHYDEIN--------------------- 873
            +E+T              GY+         RI                           
Sbjct: 534 ELERTVRTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNS 593

Query: 874 -SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
            S K           +    Q +A D+    M  +  +         ++L +HDE++ E 
Sbjct: 594 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDA------GYSIVLTVHDEVITEA 647

Query: 933 PEEE 936
           P+ E
Sbjct: 648 PDTE 651


>gi|47934668|gb|AAT39772.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGE-------KFNLS 624
           E  G ++D    + + A +   +  +E  + ++            +G+       +FN  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKITEFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S  Q+GD L   L +     T+TG+ K     LE I   D P  + I E+  + K +   
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILESI---DLPEAQLIAEYLMIQK-RVGL 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F      
Sbjct: 116 IDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFTVEDGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +LI  D S IELR LAH  +     +   N  DIH 
Sbjct: 176 RLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|83571734|ref|YP_424986.1| putative DNA polymerase [Enterobacteria phage K1E]
 gi|83308185|emb|CAJ29417.1| gp13 protein [Enterobacteria phage K1E]
          Length = 848

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 96/251 (38%), Gaps = 25/251 (9%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +    RV        T T R+     N+ NIP +      +R  FI+   K ++  D + 
Sbjct: 517 DDGEWRVPAIAISIGTSTFRMRHR--NVVNIPARG--LYPLRDLFIAGKGKLILGCDGAG 572

Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           +ELR+L+H         +  +  DIH          N  K     R  AKT  ++ +YG 
Sbjct: 573 LELRVLSHFMNDPEYQDIVLHG-DIHT--------HNQMKAGLPKRDMAKTFIYAFLYGS 623

Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
               LA    +   E  + + R+    P +    E       + GY++   G   H+  I
Sbjct: 624 GIANLAAVCGVTEEEMEEVVARFEVELPSLARLRENVIAQGNKFGYLQAPDG---HWGRI 680

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKM-----LLQIHD 926
                 ++       +N  +Q + +   + A++     +    +A   M     +  +HD
Sbjct: 681 RMSGGELKE---HTMLNVLLQMTGSLCMKYALVRAFAVMRKEGVALDSMGNPCGIANVHD 737

Query: 927 ELVFEVPEEEI 937
           E+  EVPE+E+
Sbjct: 738 EIQMEVPEDEV 748


>gi|47934672|gb|AAT39774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934674|gb|AAT39775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934676|gb|AAT39776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934678|gb|AAT39777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934680|gb|AAT39778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934686|gb|AAT39781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934694|gb|AAT39785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGE-------KFNLS 624
           E  G ++D    + + A +   +  +E  + ++            +G+       +FN  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S  Q+GD L   L +     T+TG+ K        +   D P  + I E+  + K +   
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETI---LEAIDLPEAQLIAEYLMIQK-RVGL 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F      
Sbjct: 116 IDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFTVEDGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +LI  D S IELR LAH  +     +   N  DIH 
Sbjct: 176 RLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|308071862|emb|CBW54783.1| putative DNA polymerase A [Pantoea phage LIMElight]
          Length = 778

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 111/348 (31%), Gaps = 56/348 (16%)

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           + K+       +P   +  +  +H   +  +T+T RL+S  PNLQN+P       K+++ 
Sbjct: 426 VKKLSGMLQYVIP-MDDDGSGIIHHRLNTCATITTRLSSGNPNLQNLPRDGT--SKVKQM 482

Query: 737 FISPPT--KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
           F S      ++I  DYS +E+ +         L  + +   D+H    A    +  E V 
Sbjct: 483 FTSRFGSAGRIIEVDYSALEVVMGCVHTGDLKLLHLLQTGTDMHCYRLAFRHNMPYEDVL 542

Query: 795 P---------------QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
                           Q R   K  +F+  YG +   +A    +      +++      F
Sbjct: 543 KLAVEDEDGPDYKMWKQRRTDIKPPSFAAQYGATAKGIAFATGLSLEFCQEFLDNEAKLF 602

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRR---------IHYDEINSPKSSIRNINE------ 884
           P   ++ +  +  V + G +     R                 SP     +  +      
Sbjct: 603 PDSIKFRDVIRKEVERTGNLPGQLKREQNDDGSFSVYKVGYWTSPSGQRYSFRQKKQWRD 662

Query: 885 ---------RAAINAPIQGSAADITRRAMISVHKSLEDHKL---ATKMLLQIHDELVFEV 932
                        N   QG A  +   A   + + L  +        ++  +HD    + 
Sbjct: 663 GRQTMDYKATEMANYWCQGEAFFMMAVAFGMLIRHLIANDFYDGKVALMTNVHDAAYLDA 722

Query: 933 PEEEITTASQI-IVHSMEKACLPKINL--------RVPLKVNIKVSNN 971
            +E +   + +     ME A    +           VP     ++  +
Sbjct: 723 ADEVVGRQAALDTKRIMETARERILQFWPDYGILKDVPFPAAAEMGES 770


>gi|262212057|gb|ACY35645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212063|gb|ACY35648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212099|gb|ACY35666.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212105|gb|ACY35669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|225626345|ref|YP_002727841.1| DNA polymerase A [Pseudomonas phage phikF77]
 gi|225594854|emb|CAX63139.1| DNA polymerase A [Pseudomonas phage phikF77]
          Length = 808

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 126/393 (32%), Gaps = 82/393 (20%)

Query: 660 INCGDNPIIKNILEWRQLSK------IKSTY--------ADSLPNHINKRTQRVHTFYSL 705
           +        K ++   +L K      I  TY           +  +++     +H   + 
Sbjct: 409 LEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDDGI-IHHSLNT 467

Query: 706 ASTMTGRLASLEPNLQNIPIKTDL----GQKIRRAFISPPT--KKLISADYSQIELRILA 759
            +T T RL+S  PNLQ +P K +     G +++  F+S       +   DY+ +E+ +LA
Sbjct: 468 TATATTRLSSSRPNLQQLPSKDEDDPEAGSRVKEMFVSRFGADGMIGETDYTALEVVMLA 527

Query: 760 HIAKITPLYQVFENSLDIHR-MVAAE---IFGVNIEKVSP--------------QMRRHA 801
            ++K   L        D+H   +A +     G + +++                Q R++ 
Sbjct: 528 ALSKDRNLLAKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPWHGRMMQARKNI 587

Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE- 860
           K   FS  YG S   +A        EA +++      FP    + +  ++       V  
Sbjct: 588 KPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAEATSLVMY 647

Query: 861 ---------------------------------TIFGRRIHYDEINSPKSSIRNINERAA 887
                                            T +  R         + ++ +  +   
Sbjct: 648 KAEDQMPAGAFSEMGPDGNWRQYRRGFWQAPGGTCYSFRQQERWDKEQRKTVMDFKDTQI 707

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHK---LATKMLLQIHDELVFEVPEEEITTASQII 944
            N   QG A  +   ++  + + +       +   ++  +HD +  +  ++     +  +
Sbjct: 708 ANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVNNGV 767

Query: 945 VHSMEKACLPKIN-L-----RVPLKVNIKVSNN 971
              M  A       L      VP     ++  N
Sbjct: 768 RDIMADAARYMSERLGYDIADVPFPAVAEMGPN 800


>gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU]
 gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF]
 gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS]
          Length = 735

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 84/578 (14%), Positives = 179/578 (30%), Gaps = 94/578 (16%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
             L+ +G+ ++    D+ +   +     + +  D                    S     
Sbjct: 15  ADLKKVGAYAYA-EHDSTEILLA-----SYAFDDGPAKVWDATCASG------ESDIDLD 62

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHN-IKYDKLVLH---RYGISMRGFEDIMLMSYVLD 497
            N+   ++L  L++  +      + HN + +D+L++       I      D M+ ++   
Sbjct: 63  NNSAPDDLLRGLRRA-KRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAF--- 118

Query: 498 SGRSSH----DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN--VILQ 551
                H     +  + +        ++ K +     I +      + + I   +      
Sbjct: 119 ----RHALPGSLDKLCEVL--NVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRNTHPD 172

Query: 552 LWLLLR--PKLIVEKLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            W   +   +  +  +  +Y ++        +  ++ +  ++   G  +D DL K  +A 
Sbjct: 173 EWKQFKHYARNDITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAA 232

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           ++     L+E      G           G      L+  + A       K+T  DL    
Sbjct: 233 VAAARAELQEAAQATYGGGLT-------GADFLPLLRDLAPAHHIPNAQKSTLGDLLDDA 285

Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
              +   + I      +   ST    L N ++   +R        +  T R A      Q
Sbjct: 286 DLPDEARQVIEMRLGAASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQ 345

Query: 722 NIPIKTDLGQK--------------------------IRRAFISPPTKKLISADYSQIEL 755
           N+       +                           +R   I  P KKL+ ADYS +E 
Sbjct: 346 NLARGYFKEKPLARGIEALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEG 405

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R LA +A        F   LDI+++ A ++FG++ + V    R+  K     + YG    
Sbjct: 406 RGLAWLAGEDSALDTFRAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVA 465

Query: 816 R---LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872
                +  L +   E A  +   F  +          +  +R   +++    +R      
Sbjct: 466 AFLTFSKNLGLDLEEMAVTMAGTFPDY--------HWRAALRAYEFMKLQEVKRKPLPGK 517

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910
              ++++    +             D  +R     H  
Sbjct: 518 KDDRTTVVLSKKAWLTC--------DCIKRMWRESHPR 547



 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 40/132 (30%), Gaps = 22/132 (16%)

Query: 839 FPGIHEYIEKTKN-----FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893
           +PGI   +EKT         R              +   ++    +             Q
Sbjct: 612 YPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAE--------NVTQ 663

Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953
               DI    M+ V  +        +++L +HDEL+ E P +        +   M    L
Sbjct: 664 ALCRDILAWCMLPVDNA------GYEIILSVHDELITETP-DTAEYNVAELERLM--CDL 714

Query: 954 PKINLRVPLKVN 965
           P      PLK  
Sbjct: 715 PAWAKGFPLKAE 726


>gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3]
 gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3]
          Length = 656

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 81/528 (15%), Positives = 161/528 (30%), Gaps = 118/528 (22%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++  ++A+ +++ ++ +W    P    E+    Y  +D        ++   GI +D +  
Sbjct: 159 ARTYKYALIDTDAMVGVWENTVPLPAREQA---YFEMDM-------RINARGIGVDVEAA 208

Query: 596 KQVSA-EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           + +   +         E  Y   G    +S  +++     T L        +    K  A
Sbjct: 209 QAMEDLKAFAEAQLDYEMAYLTDGGVLAVSEVEKIKTYAAT-LGEDMDDAGRETLKKIAA 267

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +D    +     +I+  L+  +  K  +     L  H+     R+         ++GR  
Sbjct: 268 RDNLPDSLRQ--LIELRLDASRAPKKSAA---ILRAHVGG---RLQHSTIYHGALSGRST 319

Query: 715 SLEPNLQNI--------PIKTDLGQKIRRAFI---------------------------- 738
           +                  KT   + I  A +                            
Sbjct: 320 ARGAGGAQTLNTARPRPGKKTADCEAILDACLRHDRAYLSSPEVGPILAALADAQRQLFR 379

Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            + P   L+ AD S IE R    IA    L + FE  +D +++ AA IF V  E V+   
Sbjct: 380 ATQPGHVLVGADLSGIEARFSPWIAGDLELLEAFEKGVDPYKLAAAAIFQVTYEAVTKDQ 439

Query: 798 RRHAKTINFSIIYGISPFRL-----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT--- 849
           R+  K    ++ YG              + +P  +  + +  +    P    +       
Sbjct: 440 RQIGKVAMLALTYGGGAGAFVSMAANYGVHLPPEQVDEIVLNWRAARPAFERWWSLCEYS 499

Query: 850 -----------------KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
                            ++F     +V      R+      +       ++     N PI
Sbjct: 500 VLMALDQPNREITMPIGRDFCSHVTFVHDGRALRMQLPSGRAISYHNARLHLEPGANVPI 559

Query: 893 -----------------------QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
                                  QG A D+    ++ V +  +       ++  ++DE +
Sbjct: 560 AIYDKPEGYIETLDRKILSNNMTQGLARDLFWSVLLDVDRVEQ-------IVHHVYDEAL 612

Query: 930 FEVPEEEITTASQIIVHSM--EKACLPKINLRVPLKVNIKVSNNWQEE 975
            EV EE        +V  M   +A  P +    PL         W+++
Sbjct: 613 LEVREEVAELRCDQLVERMCRGEAWCPGL----PLGAEGWFGLRWRKD 656


>gi|31795439|ref|NP_857892.1| hypothetical protein Y1111 [Yersinia pestis KIM]
 gi|40787970|ref|NP_857684.2| DNA polymerase I [Yersinia pestis KIM]
 gi|52788113|ref|YP_093941.1| hypothetical protein pG8786_061 [Yersinia pestis]
 gi|3883109|gb|AAC82769.1| unknown [Yersinia pestis KIM 10]
 gi|52538042|emb|CAG27467.1| hypothetical protein [Yersinia pestis]
          Length = 331

 Score =  107 bits (268), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 120/311 (38%), Gaps = 39/311 (12%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             VDG+S  Y  ++      + H+G + V A  GF   + +         +     +++D
Sbjct: 21  LFVDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD 71

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R + YP+YKANR       K+ E    Q P +     A G+  +  +  EADD+
Sbjct: 72  -GFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDL 130

Query: 121 IATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIP 175
                     +     + +++ D D +QLV             K ++++ E   +  G+P
Sbjct: 131 AGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGLP 190

Query: 176 PEK-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR----IKQKKRR 230
             +  +  +AL GD+ DNI G+ GIG   A  LL E+G++  ++   +     I + + +
Sbjct: 191 TPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINKGRYK 250

Query: 231 ENILEYAETARL----SRKLVMLRTDVPITIPLE-HLILEDC-------NGPRLISFLKA 278
               + A+ A       R L   + ++ +   ++      +        +          
Sbjct: 251 TAFNKLAKNAFNEKTGCRMLEAFKRNMMLMNLIDTKFPPSEIESIKGARDMNAFEQMCCE 310

Query: 279 LEFTKLINRVA 289
           L F   +  + 
Sbjct: 311 LNFRSFLEDLE 321


>gi|262342119|gb|ACY54570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLDLCCSQLAFIHDE 192


>gi|47934682|gb|AAT39779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGE-------KFNLS 624
           E  G ++D    + + A +   +  +E  + +             +G+       +FN  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEAFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S  Q+GD L   L +     T+TG+ K        +   D P  + I E+  + K +   
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETI---LEAIDLPEAQLIAEYLMIQK-RVGL 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F      
Sbjct: 116 IDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFTVEDGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +LI  D S IELR LAH  +     +   N  DIH 
Sbjct: 176 RLIGCDLSGIELRCLAHYMQDPEWQEELLNG-DIHT 210


>gi|262342257|gb|ACY54639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHRALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212173|gb|ACY35703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  FI  P + ++ AD + IELR+L+H          ++N      ++  +I  VN 
Sbjct: 10  HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQVNA 63

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 64  DKIGI-SRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 122

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +E  K    + G+++ + GR+I  D            +   A+N  +QG++A + +R M
Sbjct: 123 LLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYCLQGNSAILAKRWM 169

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +    +L+   L    L  +HDE
Sbjct: 170 VINQNNLKLLNLCCSQLAFVHDE 192


>gi|229472281|gb|ACQ72655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212143|gb|ACY35688.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212169|gb|ACY35701.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212175|gb|ACY35704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212179|gb|ACY35706.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212233|gb|ACY35733.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212337|gb|ACY35785.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342211|gb|ACY54616.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342215|gb|ACY54618.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342217|gb|ACY54619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342223|gb|ACY54622.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342231|gb|ACY54626.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342253|gb|ACY54637.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342255|gb|ACY54638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262342143|gb|ACY54582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       ++R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRLRALFLPSPGQAMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCPQLAFIHDE 192


>gi|262212183|gb|ACY35708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  K + ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKAVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
 gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 100/645 (15%), Positives = 195/645 (30%), Gaps = 158/645 (24%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGI--SMRGFEDIML--MSYVLDSGRSSHDIAS 507
            LK+   + + +   HN  +D+ +L+  GI   +  + D M+  +++ L  G     + +
Sbjct: 56  ELKQALSDPNTIIYAHNSHFDRTMLNHSGIKIDVSRWRDTMVQALAHGL-PGA----LGA 110

Query: 508 IAQKWLSYTRKEILKSRKS--SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           + +       K   K  K+   +       +     A   ++       +    L +E +
Sbjct: 111 LCEVLGVPLDKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAM 170

Query: 566 LHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
             V++RL        +        ++   G+ +D  L       +      L +   DL+
Sbjct: 171 REVHKRLPSWNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLT 230

Query: 618 GEKFNLSSPKQLGDILFT-----KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
             +  + +  Q   +L        +  P   K+   +                P+ + + 
Sbjct: 231 DNE--VQAATQRDALLQHISAAFGVDLPDMQKSTLERRINDPDIPL-------PLRELLA 281

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
              Q S   ++   +L N ++   +   T     ++ TGR A      QN+P  T     
Sbjct: 282 IRLQSSTTSTSKYKALMNGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNT 341

Query: 733 I---------------------------RRAFISPPTKKLISADYSQIELRILAHIAKIT 765
           I                           R   ++P  KKL+ +D S IE R+LA +A   
Sbjct: 342 IDKGIEALKAGCADLIYDDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEA 401

Query: 766 PLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI--------------NF 806
                F         D++++  A  F ++ E V   MR+  K +               F
Sbjct: 402 WKITAFSEFDKGIGADLYKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTF 461

Query: 807 SIIYGISPFRLATQ----------------LRIPRSEAADY-------------IKRYFH 837
           ++ Y +    LA                   +        Y              + + +
Sbjct: 462 ALTYSLDLDELAEAALPNIPPKVKHDALSWYQKSVETKKTYGLSETVFITCDSLKRMWRN 521

Query: 838 RFPGIHEY---IEKTKNFV----------RQNGYVETIFGRRIHYDEIN----------- 873
             P    +   +E T              R+          RI                 
Sbjct: 522 AHPETVSFWYELEDTVRHAISSPGITFPCRKLKVRRDKAWLRIVLPSGRAVCYPSPRNDN 581

Query: 874 -----------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
                      S K           +    Q +A D+    M ++    EDH     ++L
Sbjct: 582 GQISYMGVNPYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTI----EDHGYD--IVL 635

Query: 923 QIHDELVFEVPEEEI---TTASQIIVHSMEKACLPKINLRVPLKV 964
            +HDE++ E P+         S+++      A  P+  L +PL  
Sbjct: 636 TVHDEVLTEAPDNPAFNHEHLSELL------ATNPEWALDLPLSA 674


>gi|262212189|gb|ACY35711.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342241|gb|ACY54631.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y      + + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDELDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262342225|gb|ACY54623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCGQLAFVHDE 192


>gi|229472407|gb|ACQ72718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFIPTPGQIMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|229472279|gb|ACQ72654.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRGLFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSRAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342247|gb|ACY54634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 30/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           +QG++A + +R M+   ++++D  L    L  +HD
Sbjct: 157 LQGNSAILAKRWMVINQQNIKDLNLCCPQLAFVHD 191


>gi|262212097|gb|ACY35665.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212109|gb|ACY35671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212119|gb|ACY35676.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212129|gb|ACY35681.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212139|gb|ACY35686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212161|gb|ACY35697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  FI  P + ++ AD + IELR+L+H          ++N      ++  +I  VN 
Sbjct: 10  HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQVNA 63

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 64  DKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 122

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +E  K    + G+++ + GR+I  D            +   A+N  +QG++A + +R M
Sbjct: 123 LLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYCLQGNSAILAKRWM 169

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +    +L+   L    L  IHDE
Sbjct: 170 VINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342213|gb|ACY54617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  K + ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKAVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262342237|gb|ACY54629.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  FI  P + ++ AD + IELR+L+H          ++N      ++  +I  VN 
Sbjct: 11  HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQVNA 64

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 65  DKIGI-SRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 123

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +E  K    + G+++ + GR+I  D            +   A+N  +QG++A + +R M
Sbjct: 124 LLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYCLQGNSAILAKRWM 170

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +    +L+   L    L  IHDE
Sbjct: 171 VINQNNLKLLNLCCSQLAFIHDE 193


>gi|262212095|gb|ACY35664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  FI  P + ++ AD + IELR+L+H          ++N      ++  +I  VN 
Sbjct: 10  HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQVNA 63

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 64  DKIGI-SRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 122

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +E  K    + G+++ + GR+I  D            +   A+N  +QG++A + +R M
Sbjct: 123 LLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYCLQGNSAILAKRWM 169

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +    +L+   L    L  IHDE
Sbjct: 170 VINQNNLKLLNLCCSQLAFIHDE 192


>gi|6537229|gb|AAF15571.1|AF179378_2 exonuclease homolog [Mycoplasma fermentans]
          Length = 154

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 7/126 (5%)

Query: 143 DLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
           DL+QLV+  T +   VKE      E  DI +      I P ++   + L GDS DN+ G+
Sbjct: 1   DLLQLVNENTSVIKVVKENFKVSYELEDINNFENIHEIKPSQVADYKGLAGDSSDNLKGV 60

Query: 197 PGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPIT 256
            GIG+K A  L+Q + ++EN+  N  ++K K  ++ +L   + A L + L  L  +V + 
Sbjct: 61  NGIGHKGAIKLIQTFDSIENMYQNIDQVKGKT-KDKLLSEKDQAFLCKSLAKLNLNVNMD 119

Query: 257 IPLEHL 262
             L + 
Sbjct: 120 RNLNNY 125


>gi|262212133|gb|ACY35683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEV 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212193|gb|ACY35713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  FI  P + ++ AD + IELR+L+H          ++N      ++  +I  VN 
Sbjct: 3   HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQVNA 56

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 57  DKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 115

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +E  K    + G+++ + GR+I  D            +   A+N  +QG++A + +R M
Sbjct: 116 LLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYCLQGNSAILAKRWM 162

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +    +L+   L    L  +HDE
Sbjct: 163 VINQNNLKLLNLCCSQLAFVHDE 185


>gi|262212155|gb|ACY35694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHRALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|16082842|ref|NP_395396.1| putative exonuclease [Yersinia pestis CO92]
 gi|45478654|ref|NP_995510.1| hypothetical protein YP_pMT068 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108793586|ref|YP_636740.1| exonuclease [Yersinia pestis Antiqua]
 gi|108793786|ref|YP_636628.1| exonuclease [Yersinia pestis Nepal516]
 gi|145597250|ref|YP_001154717.1| exonuclease [Yersinia pestis Pestoides F]
 gi|149192739|ref|YP_001293970.1| putative exonuclease [Yersinia pestis CA88-4125]
 gi|165928498|ref|ZP_02224330.1| exonuclease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|166214635|ref|ZP_02240670.1| exonuclease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|229896998|ref|ZP_04512157.1| putative exonuclease [Yersinia pestis Pestoides A]
 gi|229897715|ref|ZP_04512870.1| putative exonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229900330|ref|ZP_04515464.1| putative exonuclease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904857|ref|ZP_04519967.1| putative exonuclease [Yersinia pestis Nepal516]
 gi|270491046|ref|ZP_06208119.1| 5'-3' exonuclease C-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|294502039|ref|YP_003565776.1| putative exonuclease [Yersinia pestis Z176003]
 gi|5834736|emb|CAB55233.1| putative exonuclease [Yersinia pestis CO92]
 gi|45357307|gb|AAS58701.1| hypothetical protein YP_pMT068 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108777850|gb|ABG20368.1| exonuclease [Yersinia pestis Nepal516]
 gi|108782133|gb|ABG16190.1| exonuclease [Yersinia pestis Antiqua]
 gi|145213018|gb|ABP42423.1| exonuclease [Yersinia pestis Pestoides F]
 gi|148872397|gb|ABR14886.1| putative exonuclease [Yersinia pestis CA88-4125]
 gi|165919488|gb|EDR36821.1| exonuclease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|166204177|gb|EDR48657.1| exonuclease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|229678172|gb|EEO74278.1| putative exonuclease [Yersinia pestis Nepal516]
 gi|229686583|gb|EEO78665.1| putative exonuclease [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229693296|gb|EEO83346.1| putative exonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700034|gb|EEO88074.1| putative exonuclease [Yersinia pestis Pestoides A]
 gi|262364089|gb|ACY64425.1| putative exonuclease [Yersinia pestis D182038]
 gi|270335027|gb|EFA45805.1| 5'-3' exonuclease C-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|294352510|gb|ADE66566.1| putative exonuclease [Yersinia pestis Z176003]
 gi|320017584|gb|ADW01154.1| putative exonuclease [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 314

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 120/311 (38%), Gaps = 39/311 (12%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             VDG+S  Y  ++      + H+G + V A  GF   + +         +     +++D
Sbjct: 4   LFVDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD 54

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R + YP+YKANR       K+ E    Q P +     A G+  +  +  EADD+
Sbjct: 55  -GFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDL 113

Query: 121 IATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIP 175
                     +     + +++ D D +QLV             K ++++ E   +  G+P
Sbjct: 114 AGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGLP 173

Query: 176 PEK-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR----IKQKKRR 230
             +  +  +AL GD+ DNI G+ GIG   A  LL E+G++  ++   +     I + + +
Sbjct: 174 TPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINKGRYK 233

Query: 231 ENILEYAETARL----SRKLVMLRTDVPITIPLE-HLILEDC-------NGPRLISFLKA 278
               + A+ A       R L   + ++ +   ++      +        +          
Sbjct: 234 TAFNKLAKNAFNEKTGCRMLEAFKRNMMLMNLIDTKFPPSEIESIKGARDMNAFEQMCCE 293

Query: 279 LEFTKLINRVA 289
           L F   +  + 
Sbjct: 294 LNFRSFLEDLE 304


>gi|229472305|gb|ACQ72667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472551|gb|ACQ72790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212067|gb|ACY35650.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212073|gb|ACY35653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212087|gb|ACY35660.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212103|gb|ACY35668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212107|gb|ACY35670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212117|gb|ACY35675.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212149|gb|ACY35691.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212151|gb|ACY35692.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212163|gb|ACY35698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212185|gb|ACY35709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212199|gb|ACY35716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342209|gb|ACY54615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342219|gb|ACY54620.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342245|gb|ACY54633.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342117|gb|ACY54569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F   P + ++ AD + IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDS----RFRELFQPSPGQVMVGADLAGIELRMLSHF------LARYDGGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKQLSSSAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RTAYVEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212231|gb|ACY35732.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRCA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212217|gb|ACY35725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  FI  P + ++ AD + IELR+L+H          ++N      ++  +I  VN 
Sbjct: 10  HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQVNA 63

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 64  DKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 122

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +E  K    + G+++ + GR+I  D            +   A+N  +QG+ A + +R M
Sbjct: 123 LLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYCLQGNYAILAKRWM 169

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +    +L+   L    L  +HDE
Sbjct: 170 VINQNNLKLLNLCCSQLAFVHDE 192


>gi|289624730|ref|ZP_06457684.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 517

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 136/371 (36%), Gaps = 37/371 (9%)

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
                   Y  +++P+ D +      GI ID   L+     I  +     +         
Sbjct: 143 KDNNEWERYTTVERPVADYLISSAAAGIAIDTTRLRIHKENIEFDYYMALKQFSAKYDVP 202

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
             L S   +   L   + +               + +      ++    ++L  R+++K 
Sbjct: 203 LELPSNDDIIRRL-EPMGYDFLG--------VDVEYVLNFVPMNDNFAIDLLRLRKIAKS 253

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           +S       N I    +R++       ++T R+   +P+LQN      L +  R   +  
Sbjct: 254 RSV-----LNAIPLSQKRIYPIVDCFGSITSRIYFKDPSLQN------LAKHHRDILVPD 302

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
             +     DY Q E  I+A ++    L +++ +  D+++ VA +IF           R+ 
Sbjct: 303 EGRAFSYVDYEQYEAGIMAALSGDEKLLELYADG-DLYKQVANDIFE------GEGRRKE 355

Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           AK +  S  YG+    L               K +F +F    E+     +   ++  + 
Sbjct: 356 AKRLFLSYAYGMKNRHLI-DAAFGYGADRRATKTFFKQFGKFEEWKISVHDSFGKDQRIG 414

Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
           T+ G  +           + +  +R+A++  +QG+A+ I +++++ +        L   M
Sbjct: 415 TVLGNYLK----RDRTGPLTDKEKRSAVSQLVQGTASLIFKKSLMKLRDE-AGAGLKVPM 469

Query: 921 LLQIHDELVFE 931
               HD ++FE
Sbjct: 470 ----HDAVLFE 476


>gi|213025636|ref|ZP_03340083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 99

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 541 HAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           +A E+++V LQL L + P+L   K  L+V+E ++ P++ V+S++E  G++ID  +L + S
Sbjct: 1   YAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHS 60

Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
            EI+  L  LE+  +D++GE FNLSS KQL  ILF K
Sbjct: 61  EEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEK 97


>gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G]
          Length = 726

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 78/520 (15%), Positives = 163/520 (31%), Gaps = 76/520 (14%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
               T +      K +  + +  +            F D  V     + G + +  ++  
Sbjct: 6   LDFETFSEADL--KKVG-SYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSD-MPGDLHR 61

Query: 452 YLKKFFE-NEHFLKIGHN-IKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSH--- 503
            L++  + N     + HN   +D+L++     + I +    D M+ ++        H   
Sbjct: 62  ALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAF-------RHALP 114

Query: 504 -DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN--SNVILQLWLLLRPKL 560
             + ++ +  L  +  +  K ++    I + S    + + I    +      W L     
Sbjct: 115 GSLDALCEV-LGVS-ADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYA 172

Query: 561 IVE--KLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           + +   +  V+ +L        +  ++++   +   G ++D  L +     + K+   L+
Sbjct: 173 VSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQ 232

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           E      G           G      L+  + A       K+T  DL   +   +     
Sbjct: 233 EEAQRKYGGSLT-------GKDFLPILRELAPAHRIHNAQKSTLNDLLADDDLPDDARTI 285

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI----K 726
           I      +   ST  + L    +   +R        +  T R A      QN+       
Sbjct: 286 IEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHD 345

Query: 727 TDLGQKI----------------------RRAFISPPTKKLISADYSQIELRILAHIAKI 764
            +L + I                      R   I     K + ADYS +E R LA +A  
Sbjct: 346 DELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGE 405

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ---MRRHAKTINFSIIYGISPFR---LA 818
                 F   LDI+ + A ++FG+  + +  +   +R+  K     + Y          A
Sbjct: 406 ETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFA 465

Query: 819 TQLRIPRSEAADYIKRYFHRF---PGIHEYIEKTKNFVRQ 855
             L +   + A  +   F  +        Y        ++
Sbjct: 466 KNLGLDLVDMAKTMDGTFPDYIWAATARGYEWARIQEAKR 505



 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           ++G V T    +   +   + +   +       +    Q    D+   A+++V  +    
Sbjct: 616 EDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEAN---- 671

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
                ++L +HDE++ E P+      ++ +   M    LP+     PL   
Sbjct: 672 --GYPIVLHVHDEIICETPDLPEYNVAE-LERLM--CELPEWAEGFPLVAE 717


>gi|229472197|gb|ACQ72613.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472287|gb|ACQ72658.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472311|gb|ACQ72670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472417|gb|ACQ72723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFIPTPGQIMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342261|gb|ACY54641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  FI  P + ++ AD + IELR+L+H          ++N      ++  +I  VN 
Sbjct: 9   HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQVNA 62

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 63  DKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 121

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +E  K    + G+++ + GR+I  D            +   A+N  +QG++A + +R M
Sbjct: 122 LLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYCLQGNSAILAKRWM 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +    +L+   L    L  IHDE
Sbjct: 169 VINQNNLKLLNLCCSQLAFIHDE 191


>gi|229472525|gb|ACQ72777.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  106 bits (264), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + +++AD S IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +        + G+++ I GR+I  D            +   A+N  
Sbjct: 110 REAYIDAIDGLDKLL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           ++G++A + +R M+   ++++D  L    L  IHDE
Sbjct: 157 LRGNSAILAKRWMVINQQNIKDLNLCCSQLAFIHDE 192


>gi|293411939|ref|ZP_06654664.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469494|gb|EFF11983.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 314

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 120/311 (38%), Gaps = 39/311 (12%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             VDG+S  Y  ++      + H+G + V A  GF   + +         +     +++D
Sbjct: 4   LFVDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD 54

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R + YPDYKANR       K+ E    Q P +     A G+  I  +  EADD+
Sbjct: 55  -GFSDKRRDFYPDYKANRDDDPDMKKMKEGFAVQKPYILKMMTALGVNQIIAKDAEADDL 113

Query: 121 IATY-TYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI- 174
                + +A +     + +++ D D +QLV             K ++++ E   +  G  
Sbjct: 114 AGLLVSRMAPQPTVEHIYLLTGDSDWLQLVRENVSWVSLREDAKNKQVNFEQFAELTGFA 173

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-------SRIKQK 227
            P   +  +AL GD+ DNI G+ GIG   A  LL E+G++  ++           + + K
Sbjct: 174 TPRAFLEAKALQGDNSDNISGVGGIGAGGAKELLHEWGSVATMVRGINDGSIVVDKGRHK 233

Query: 228 KRRENILEYAETARL-SRKLVMLRTDVPITIPLE--------HLILEDCNGPRLISFLKA 278
                + + A   +   R L   + ++ +   +E          I  + +          
Sbjct: 234 TAFNKLAKNAFNEKTGCRMLEAFKRNITLMNLIETKFPPTEIETIKGNRDVKAFEQLCYE 293

Query: 279 LEFTKLINRVA 289
           L F   +  + 
Sbjct: 294 LNFRSFLEDLE 304


>gi|262212187|gb|ACY35710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  K + ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKAVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|47934696|gb|AAT39786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGE-------KFNLS 624
           E  G ++D    + + A +   +  +E  + ++            +G+       +FN  
Sbjct: 1   ERNGFKLDVPEAQILHATLIDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S  Q+GD L   L +     T+TG+ K        +   D P  + I E+  + K +   
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETI---LEAIDLPEAQLIAEYLMIQK-RVGL 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F      
Sbjct: 116 IDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFTVEDGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +LI  D S IELR LAH  +     +   N  DIH 
Sbjct: 176 RLIGCDLSGIELRRLAHYMQDPEWQEELLNG-DIHT 210


>gi|262342113|gb|ACY54567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI      +  AD S IELR+L+H          F+     
Sbjct: 1   PNLAQVPSDG----RFRELFIPSKGLVMCGADLSGIELRMLSHY------LARFDGGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS------EAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++        S      +  + 
Sbjct: 51  EILLNGDIHQVNADKIGI-SRKQVKTVTYAFLYGAGDEKIGYSYDAQLSSTAAKRKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +        + G+V++I GR+I  D            +   A+N  
Sbjct: 110 RSAYVSAVDGLGDLLTAV-AKAAERGFVKSIDGRKIKVD------------SPHKALNYL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q  A  + ++ M    + +++ +L    L  IHDE
Sbjct: 157 LQSGAGVVAKKWMCINQEHIKELQLCCSQLAFIHDE 192


>gi|47934684|gb|AAT39780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 26/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGE-------KFNLS 624
           E  G ++D    + + A +   +  +E  + ++            +G+       +FN  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S  Q+GD L   L +     T+TG+ K        +   D P  + I E+  + K +   
Sbjct: 61  SRLQIGDRLQE-LGWKPKQFTETGKAKVDETI---LEAIDLPEAQLIAEYLMIQK-RVGL 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   +++++T+RVH       T+TGR+A   PNL  +P +    G++ R  F      
Sbjct: 116 IDSWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVPSVAKPYGKECRSLFTVEDGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +LI  D S IELR LAH  +     +   N  DIH 
Sbjct: 176 RLIGCDLSGIELRCLAHHMQDPEWQEELLNG-DIHT 210


>gi|262212365|gb|ACY35799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+  + +YG    ++      P      + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTNAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E       + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLE-VIRKASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R  +    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWTVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342207|gb|ACY54614.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 QQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212079|gb|ACY35656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212083|gb|ACY35658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + RR M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILARRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212369|gb|ACY35801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 26/195 (13%)

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798
             P + +++AD S IELR+L+H          +++      ++  +I  VN +K+    R
Sbjct: 18  PSPGQVMVAADLSGIELRMLSHFPAK------YDDGRYAGILLNGDIHQVNADKIGI-SR 70

Query: 799 RHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           +  KT+ ++ +YG    ++             + +  +  + Y     G+ + +      
Sbjct: 71  KLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGLDKLL-AAIKT 129

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
             + G+++ I GR+I  D            +   A+N  +QG++A + +R M+   ++++
Sbjct: 130 ASERGFIKAIDGRKIMVD------------SPHKALNYCLQGNSAILAKRWMVINQQNIK 177

Query: 913 DHKLATKMLLQIHDE 927
           D  L    L  IHDE
Sbjct: 178 DLNLCCSQLAFIHDE 192


>gi|262212225|gb|ACY35729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-PRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|167467621|ref|ZP_02332325.1| hypothetical protein YpesF_06939 [Yersinia pestis FV-1]
          Length = 314

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 119/311 (38%), Gaps = 39/311 (12%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             VDG+S  Y  ++      + H+G + V A  GF   + +         +     +++D
Sbjct: 4   LFVDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD 54

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R + YP+YKANR       K+ E    Q P +     A G+  +  +  EADD+
Sbjct: 55  -GFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDL 113

Query: 121 IATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIP 175
                     +     + +++ D D +QLV             K ++++ E   +  G+P
Sbjct: 114 PGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGLP 173

Query: 176 PEK-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR----IKQKKRR 230
             +  +  +AL GD+ DNI G+ GIG   A  LL E+G++  ++   +     I + + +
Sbjct: 174 TPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINKGRYK 233

Query: 231 ENILEYAETARL----SRKLVMLRTD------VPITIPLEHL--ILEDCNGPRLISFLKA 278
               + A+ A       R L   + +      +    P   +  I    +          
Sbjct: 234 TAFNKLAKNAFNEKTGCRMLEAFKRNMMLMNLIDTKFPPSEIESIKGARDMNAFEQMCCE 293

Query: 279 LEFTKLINRVA 289
           L F   +  + 
Sbjct: 294 LNFRSFLEDLE 304


>gi|85708302|ref|ZP_01039368.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
 gi|85689836|gb|EAQ29839.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
          Length = 515

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 160/420 (38%), Gaps = 48/420 (11%)

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           ++L L  K   E     +  ++ P   ++      GI ID   L +   +   +     +
Sbjct: 136 MYLDLCAKAYAESEFERFFNVEVPAYRLLQLSMSAGISIDTSGLSEKRGQAEHDYFVFLK 195

Query: 612 NIYDLSGEKFNLSSPKQL-GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           +            S +++   +L    +    +     ++    +D      GD+ +   
Sbjct: 196 DYSANHDMPIETPSRRRIKAKLLQEGFELDGVSVDYILEFVPHDRDF-----GDDTL--T 248

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
           +L      K+  +            T        +  + T R+    PNLQNIP K    
Sbjct: 249 LLALDAARKVLGSLT--------LSTNTTRPLVDVFGSRTSRVQIRSPNLQNIPKK---- 296

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
              R    S    +L   D+ Q E+ I+A ++    L +++    D++ + A    G+  
Sbjct: 297 --YRSIINSRDDAQLCYVDFDQFEVGIMAALSGDEMLKELYAAG-DMYELFATTQLGLV- 352

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRL---ATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847
                  R+ AK +  S  YG+S   L   A  L + R +A       F +F G  ++  
Sbjct: 353 -----DNRKAAKQLFLSYAYGMSRKALVDAAVSLGVERQKAKKA----FRQFRGYEDWKR 403

Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                 ++ G V +I G           +  +    +R+A++  +QG+A+ I +RA+ISV
Sbjct: 404 TVWTEFQKAGRVSSILGNHFR----REGQGQLTGKEQRSAVSQVVQGTASLIFKRALISV 459

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967
             SLED ++A    L +HD L+FE   +E       +V   E      +N  V  K +I 
Sbjct: 460 -ASLEDLRVA----LPMHDALLFEHRSDETP---AKVVEVFESVMTVSLNSEVSGKASIS 511


>gi|167933046|ref|ZP_02520133.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [candidate division TM7 single-cell isolate TM7b]
          Length = 132

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 6/125 (4%)

Query: 38  IAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEI--YPDYKANRPKIPEMLLPQL 95
           + GF ++  ++++    +    +  V +D    + R  +   P YKA R   P     Q+
Sbjct: 1   MFGFASLSLEIVKKLEPD----YVCVAWDKKHTSIRKRLNILPTYKAGRKTPPSDFFNQI 56

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
           P++     AFG P  E   +EADDI+ T + +AE+ G    ++++D D++QLVSP T +Y
Sbjct: 57  PILHDLLDAFGWPLYEFDDYEADDIMGTISLMAEQHGIETCLVTSDLDMLQLVSPLTKVY 116

Query: 156 DTVKE 160
              + 
Sbjct: 117 AMKRG 121


>gi|229472555|gb|ACQ72792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F+  P + ++ AD + IE R+L H          +++    
Sbjct: 1   PNLAQVPSD----PRFRELFLPSPGQVMVGADLAGIEFRMLTHF------LARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RGAYIDAIDGLDKLLEAIKK-ASERGFIKALDGRKIMVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +++   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQHNMKHLNLCCSQLAFVHDE 192


>gi|262212131|gb|ACY35682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI    + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTLGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++      P      + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYGKPLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212065|gb|ACY35649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212229|gb|ACY35731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI    + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTLGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++      P      + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|220979962|emb|CAP72154.1| Putative exonuclease (Hypothetical protein) [Escherichia coli LF82]
          Length = 314

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 119/311 (38%), Gaps = 39/311 (12%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             VDG+S  Y  ++      + H+G + V A  GF   + +         +     +++D
Sbjct: 4   LFVDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD 54

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R + YPDYKANR       K+ E    Q P +     A G+  +  +  EADD+
Sbjct: 55  -GFSDKRRDFYPDYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVTQLIAKDAEADDL 113

Query: 121 IATY-TYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI- 174
                + +A +     + +++ D D +QLV             K ++++ E   +  G  
Sbjct: 114 AGLLVSRMAPQPTVEHIYLLTGDSDWLQLVRENVSWVSLREDAKNKQVNFEQFAELTGFA 173

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-------SRIKQK 227
            P   +  +AL GD  DNI G+ GIG   A  LL E+G++  ++           + + K
Sbjct: 174 TPRAFLEAKALQGDKSDNISGVGGIGAGGAKELLHEWGSVATMVRGINDGSIVVDKGRHK 233

Query: 228 KRRENILEYAETARL-SRKLVMLRTDVPITIPLE--------HLILEDCNGPRLISFLKA 278
                + + A   +   R L   + ++ +   +E          I  + +          
Sbjct: 234 TAFNKLAKNAFNEKTGCRMLEAFKRNITLMNLIETKFPPTEIETIKGNRDVKAFEQLCYE 293

Query: 279 LEFTKLINRVA 289
           L F   +  + 
Sbjct: 294 LNFRSFLEDLE 304


>gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11]
 gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11]
 gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1]
          Length = 687

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 92/601 (15%), Positives = 182/601 (30%), Gaps = 137/601 (22%)

Query: 460 EHFLKIGHNIKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              L   HN  +D+ VL     R    +  + D M+ +    +      +  + +     
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQAL---AHGLPGSLGELCEVLGVP 120

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERL- 572
             K   K  K+ I +      +  +     S    + W        L +E +  VY+RL 
Sbjct: 121 QDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLP 180

Query: 573 -------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
                  +  +     Q+   G+ +D  L +     + +    L +   +++  +   ++
Sbjct: 181 KWNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAAT 240

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            +   D L   +    G +    Q  T  + +   +   + + + +    Q S   ++  
Sbjct: 241 QR---DALIKHIVESYGVELPDMQRSTLERRIADPDLP-SAVKELLAIRLQASTTSTSKY 296

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI------------ 733
            +L   ++   +   T     ++ TGR A      QN+P  +   ++I            
Sbjct: 297 KALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCA 356

Query: 734 ---------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN----- 773
                          R   I+P  KKL+ +D S IE R+LA +A        F       
Sbjct: 357 DLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGT 416

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLRIP---- 824
             D++++  A+ F +  + V   MR+  K +   + YG        F L   L +     
Sbjct: 417 GPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELAN 476

Query: 825 -----------RSEAADYIKR-----------------------YFHRFPGIHEY---IE 847
                      R   + Y +                        +    P   ++   +E
Sbjct: 477 AALPNIPRDVIREAKSWYNESVKRKSTFGLSERVFIACDSLKRLWRRAHPATCDFWYELE 536

Query: 848 KTKNFVRQN-------GYV---ETIFGRRIHYDEIN----------------------SP 875
           +T              GY+         RI                            S 
Sbjct: 537 RTVRTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSR 596

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           K           +    Q +A D+    M  +  +         ++L +HDE++ E P+ 
Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDA------GYSIVLTVHDEVITEAPDT 650

Query: 936 E 936
           E
Sbjct: 651 E 651


>gi|309797643|ref|ZP_07692030.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 145-7]
 gi|308118740|gb|EFO56002.1| 5'-3' exonuclease, SAM fold protein [Escherichia coli MS 145-7]
          Length = 331

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 116/311 (37%), Gaps = 39/311 (12%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             VDG+S  Y  ++      + H+G + V A  GF   + +         +     +++D
Sbjct: 21  LFVDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD 71

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R + YPDYKANR       K+ E    Q P +     A G+  +  +  EADD+
Sbjct: 72  -GFSDKRRDFYPDYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVTQLIAKDAEADDL 130

Query: 121 IATYTYIAEKEGF--AVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI- 174
                     +     + +++ D D +QLV             K ++++ E   +  G  
Sbjct: 131 AGLLVASIAPQPIVEHIYLLTGDSDWLQLVRENVSWVSLREDAKNKQVNFEQFAELTGFA 190

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-------SRIKQK 227
            P   +  +AL GD  DNI G+ GIG   A  LL E+G++  ++           + + K
Sbjct: 191 TPRAFLEAKALQGDKSDNISGVGGIGAGGAKELLHEWGSVATMVRGINDGSIVVDKGRHK 250

Query: 228 KRRENILEYAETARL-SRKLVMLRTDVPITIPLE--------HLILEDCNGPRLISFLKA 278
                + + A   +   R L   + ++ +   +E          I  + +          
Sbjct: 251 TAFNKLAKNAFNEKTGCRMLEAFKRNITLMNLIETKFPPTEIETIKGNRDVKAFEQLCYE 310

Query: 279 LEFTKLINRVA 289
           L F   +  + 
Sbjct: 311 LNFRSFLEDLE 321


>gi|262342089|gb|ACY54555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  F + P   +  AD S +ELR+LAH                 
Sbjct: 1   PNLAQVPSD----YRFRELFTASPGMVMCGADLSGVELRMLAHYLAKHD------GGKYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++             +++  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRSAVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKAKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K+   + G++  I  R+I  D            +   A+N  
Sbjct: 110 KQAYIEAIEGLDKLLADVKS-ASERGFIRAIDQRKILVD------------SPHKALNFL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGS+A + +R +   H++++   +    L  IHDE
Sbjct: 157 LQGSSACLAKRWLTIAHENIKQLGIKAHQLAFIHDE 192


>gi|262212207|gb|ACY35720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342263|gb|ACY54642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 28/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR--IPRSEAADYIKRY 835
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++       +    A    K  
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEV 109

Query: 836 FHRFPGIHEYIEK---TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
              +    + ++K         + G+++ + GR+I  D            +   A+N  +
Sbjct: 110 RQAYIEAIDVLDKLLGAIKKASERGFIKALDGRKIIVD------------SPHKALNYCL 157

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 158 QGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212115|gb|ACY35674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSNS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++               +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|229472265|gb|ACQ72647.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 30/206 (14%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
             RR F + P   ++ AD S IELR+LAH          +++      ++  +I   N +
Sbjct: 11  NFRRLFCASPGHIMVGADLSGIELRMLAHY------LARYDDGRYGDILLHGDIHQENAD 64

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADYIKRYFHRFPGIHEY 845
           K+    RR  KT+ ++ +YG    R+             + +  +  + Y    PG+ + 
Sbjct: 65  KIGI-SRRLVKTVTYAFLYGAGDQRIGESYDQSLPPDKAKQKGKEIRQAYMDAIPGLEKL 123

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +E TK      G++ +I GR I+ D            +   A+N  +Q SA  I +R M+
Sbjct: 124 VEATKK-AADRGFIRSIDGRHINVD------------SSHKALNMLLQSSAGCIAKRWMV 170

Query: 906 SVHKSLE----DHKLATKMLLQIHDE 927
             + +      ++   T  L  IHDE
Sbjct: 171 IANDNFPTIDNEYLAHTHQLAFIHDE 196


>gi|229472185|gb|ACQ72607.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472199|gb|ACQ72614.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472315|gb|ACQ72672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342203|gb|ACY54612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI------PRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|32442307|gb|AAP82224.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score =  105 bits (261), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 155/428 (36%), Gaps = 73/428 (17%)

Query: 488 DIMLMSYVLDSGRSSHDI----ASIAQKWLSYTRKEILKSR----KSSIPIDKISD---- 535
           D +++S +     S  D       + Q+       E    R    K     +  +D    
Sbjct: 1   DTLVLSRLYYPNISDRDYERRPDGMPQRLYGRHSLEAWGYRLKCFKGDFAKNDSNDWSTY 60

Query: 536 -SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++ ++ I+++ V L+L+ LL+ ++        Y +L+  M  +++Q E +G + D D 
Sbjct: 61  TPEMLDYCIQDTQVTLRLYELLQRRMET---YADYIKLEMDMAMLMAQQEASGFRFDMDA 117

Query: 595 LKQVSAEISKNLLSLEENIYDL---------------------SGEK------FNLSSPK 627
             +V A++     S+ E I  +                     +G        FN +S +
Sbjct: 118 AVRVRAQLQDEFDSITEAIAKIYLYVPGKVFTPKRADKKRGYVAGAPMTRLTDFNPTSRQ 177

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--------NCGDNPIIKNILEWRQLSK 679
            +   L T         T+TG+ K     L ++        N   +   +  +    L K
Sbjct: 178 NIAWALQTFRGARFTKITETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQK 237

Query: 680 IKSTY---ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
                    +S  N I       H+     ST TGR A   PNL  +          R  
Sbjct: 238 WLGQLSEGTNSWFNSIEGDGCIHHS--CTLSTQTGRNAHRGPNLGQVVS----APWAREL 291

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F+  P   ++ AD   +ELR+L H          F+       +V  +I   N ++V   
Sbjct: 292 FVPHPGHIMVGADLEGLELRLLGHY------LAAFDEGSFAEVVVNGDIHQQNADRVGC- 344

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAA------DYIKRYFHRFPGIHEYIEKTK 850
            R   KT+ ++ IYG    +L   L+   S+A       +  +++    PG+   ++  K
Sbjct: 345 TRTQVKTLTYAFIYGAGDVKLGHSLQPELSDAQKKTLGGELRRKFLDAIPGLEPLVDAVK 404

Query: 851 NFVRQNGY 858
             VR  G 
Sbjct: 405 LKVRSTGR 412


>gi|166012257|ref|ZP_02233155.1| exonuclease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|165988836|gb|EDR41137.1| exonuclease [Yersinia pestis biovar Antiqua str. E1979001]
          Length = 271

 Score =  105 bits (261), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 23/220 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             VDG+S  Y  ++      + H+G + V A  GF   + +         +     +++D
Sbjct: 4   LFVDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD 54

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R + YP+YKANR       K+ E    Q P +     A G+  +  +  EADD+
Sbjct: 55  -GFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDL 113

Query: 121 IATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIP 175
                     +     + +++ D D +QLV             K ++++ E   +  G+P
Sbjct: 114 AGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGLP 173

Query: 176 PEK-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             +  +  +AL GD+ DNI G+ GIG   A  LL E+G++
Sbjct: 174 TPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSV 213


>gi|262212123|gb|ACY35678.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  105 bits (261), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRELVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIAD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|323934233|gb|EGB30657.1| 5'-3' exonuclease [Escherichia coli E1520]
          Length = 314

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 120/311 (38%), Gaps = 39/311 (12%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             VDG+S  Y  ++      + H+G + V A  GF   + +         +     +++D
Sbjct: 4   LFVDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD 54

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R + YPDYKANR       K+ E    Q P +     A G+  +  +  EADD+
Sbjct: 55  -GFSDKRRDFYPDYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVTQLIAKDAEADDL 113

Query: 121 IATY-TYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI- 174
                + +A +     + +++ D D +QLV             K ++++ E   +  G  
Sbjct: 114 AGLLVSRMAPQPTVEHIYLLTGDSDWLQLVRENVSWVSLREDAKNKQVNFEQFAELTGFA 173

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-------SRIKQK 227
            P   +  +AL GD+ DNI G+ GIG   A  LL E+G++  ++           + + K
Sbjct: 174 TPRAFLEAKALQGDNSDNISGVGGIGAGGAKELLHEWGSVATMVRGINDGSIVVDKGRHK 233

Query: 228 KRRENILEYAETARL-SRKLVMLRTDVPITIPLE--------HLILEDCNGPRLISFLKA 278
                + + A   +   R L   + ++ +   +E          I  + +          
Sbjct: 234 TAFNKLAKNAFNEKTGCRMLEAFKRNITLMNLIETKFPPTEIETIKGNRDVKAFEQLCYE 293

Query: 279 LEFTKLINRVA 289
           L F   +  + 
Sbjct: 294 LNFRSFLEDLE 304


>gi|262212125|gb|ACY35679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
            QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 QQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212141|gb|ACY35687.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +   K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLGAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|18466675|ref|NP_569482.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16505991|emb|CAD09877.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 314

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 23/220 (10%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             VDG+S  Y  ++      + H+G + V A  GF   + +         +     +++D
Sbjct: 4   LFVDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD 54

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R + YP+YKANR       K+ E    Q P +     A G+  +  +  EADD+
Sbjct: 55  -GFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDM 113

Query: 121 IATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIP 175
                     +     + +++ D D +QLV             K ++++ E   +  G+P
Sbjct: 114 AGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGLP 173

Query: 176 PEK-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             +  +  +AL GD+ DNI G+ GIG   A  LL E+G++
Sbjct: 174 TPRAFLEAKALQGDNSDNIKGVGGIGDGGAKELLHEWGSV 213


>gi|262342251|gb|ACY54636.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P         R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HGFRELFIPTPGQVMVGADLAGIELRMLSHS------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212353|gb|ACY35793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 28/204 (13%)

Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789
           G + RR F + P + ++ AD S IELR+LAH          ++       ++  +I  VN
Sbjct: 9   GPEFRRLFTATPGQVMVGADLSGIELRMLAHY------LARYDGGRYADILLNGDIHQVN 62

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEAA----DYIKRYFHRFPGIH 843
            +K+    R+  K + ++ +YG       L    ++P ++A     +    Y    PG  
Sbjct: 63  ADKIGI-TRKLVKNVTYAFLYGAGDVKIGLTYDKQLPPNKAKKKGAEIRAAYVAAIPGPD 121

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           + +   K      G+V+ I GR++  D            +   A+N  +QGSA  I +R 
Sbjct: 122 DLLTAIK-VAGDRGFVKAIDGRKVLLD------------SPHKALNFLLQGSAGVIAKRW 168

Query: 904 MISVHKSLEDHKLATKMLLQIHDE 927
           ++  +     H +    L  IHDE
Sbjct: 169 LVIANHH--THDICCSQLAFIHDE 190


>gi|262212301|gb|ACY35767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRILVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605]
 gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605]
          Length = 687

 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 89/603 (14%), Positives = 181/603 (30%), Gaps = 137/603 (22%)

Query: 458 ENEHFLKIGHNIKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            +   L   HN  +D+ VL     R    +  + D M+ +    +      +  + +   
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQAL---AHGLPGSLGELCEILG 118

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHV--- 568
               K   K  K+ I +      +  +     S    + W        L +E +  V   
Sbjct: 119 VPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKR 178

Query: 569 -----YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
                Y+  +  +     Q+   G+ +D  L +     + +    L +   +++  +   
Sbjct: 179 LPKWNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQA 238

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           ++ +   D L   +    G +    Q  T  + +   +   + + + +    Q S   ++
Sbjct: 239 ATQR---DALIKHIVESYGVELPDMQRSTLERRIADPDLP-SAVKELLAIRLQASTTSTS 294

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI---------- 733
              +L   ++   +   T     ++ TGR A      QN+P  +   ++I          
Sbjct: 295 KYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAG 354

Query: 734 -----------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--- 773
                            R   I+P  KK++ +D S IE R+LA +A        F     
Sbjct: 355 CADLLFDNIMELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDA 414

Query: 774 --SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLRIP-- 824
               D++++  A+ F +  + V   MR+  K +   + YG        F L   L +   
Sbjct: 415 GTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDEL 474

Query: 825 -------------RSEAADYIKR-----------------------YFHRFPGIHEY--- 845
                        R   + Y +                        +    P   ++   
Sbjct: 475 ANAALPNIPRDVIREAKSWYGESVKRKSTYGLSERVFIACDSLKRLWRRAHPATCDFWYE 534

Query: 846 IEKTKNFVRQN-------GYV---ETIFGRRIHYDEIN---------------------- 873
           +E+T              GY+         RI                            
Sbjct: 535 LERTVRTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S K           +    Q +A D+    M  +  +         ++L +HDE++ E P
Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDA------GYSIVLTVHDEVITESP 648

Query: 934 EEE 936
           + E
Sbjct: 649 DTE 651


>gi|262212219|gb|ACY35726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P         R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HGFRELFIPTPGQVMVGADLAGIELRMLSHS------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R  +    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWTVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212153|gb|ACY35693.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212177|gb|ACY35705.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G  + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGPDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +  M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKWWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|124800751|ref|XP_001349551.1| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium falciparum 3D7]
 gi|23503355|gb|AAC71825.2| 5'-3' exonuclease, N-terminal resolvase-like domain, putative
           [Plasmodium falciparum 3D7]
          Length = 577

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYD--------TVKEEKIDIEHVIKKWGIPPEKMV 180
           +K+ F V ++S+DKDL+QL+      Y+          K   ++     ++  I P +  
Sbjct: 403 KKKKFRVIVVSSDKDLLQLLEYNNETYNMDISICQPNKKYRLVNSHLFYEEHEILPSQYS 462

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
               LTGD  D I G+P IG KT+  LL+EY N+ENIL N  ++   K     L   E  
Sbjct: 463 DYLILTGDKTDGISGVPYIGDKTSKCLLKEYHNIENILKNLHKL-PSKLHHIFLNNIENI 521

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINR 287
              RKL+ L+ +   ++  +    +   N  +  +F       KL+ +
Sbjct: 522 NTFRKLIKLKCETNESLVFDDYKQKRIKNFEQFRNFADKYSLHKLLKK 569



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
              +VDGSS +++ F+  P L   +D + ++ I GF   L K+        + ++ A+IF
Sbjct: 109 TFLIVDGSSILFKNFFGMPFLKNDND-VNLSTIYGFIQSLNKIYNLF----LPTYIAIIF 163

Query: 66  DYPAVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D       + +IY +YK  R K P+ L  QL +V       GI  I     E+DD IA  
Sbjct: 164 DSKTSNNDKKKIYANYKIFRRKNPDELYEQLKIVSNFCDTIGIKTISSTNIESDDYIARI 223

Query: 125 T 125
            
Sbjct: 224 V 224


>gi|262212205|gb|ACY35719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 30/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR------SEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++       R       +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSCDKLRSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           +QG++A + +R M+    +L+   L    L  IHD
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHD 191


>gi|262212111|gb|ACY35672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342243|gb|ACY54632.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI    + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTLGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++      P      + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|32442311|gb|AAP82226.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 160/435 (36%), Gaps = 73/435 (16%)

Query: 488 DIMLMSYVLDSGRSSHDIAS----IAQKWLSYTRKEILKSR----KSSIPIDKISD---- 535
           D ++MS +     S  D       + Q+       E    R    K     +  +D    
Sbjct: 1   DTLVMSRLYYPNISDRDYERRPEGMPQRLYGRHSLEAWGYRLKCFKGDFAKNDSNDWSTY 60

Query: 536 -SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++ ++ I+++ V L+L+ LL+ ++        Y +L+  M  +++Q E +G + D D 
Sbjct: 61  TPEMLDYCIQDTQVTLRLYELLQRRMET---YADYIKLEMDMAMLMAQQEASGFRFDMDA 117

Query: 595 LKQVSAEISKNLLSLEENIYDL---------------------SGEK------FNLSSPK 627
             +V A++     S+   I  +                     +G        FN +S +
Sbjct: 118 AVRVRAQLQDEFDSITNAIAQIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQ 177

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--------NCGDNPIIKNILEWRQLSK 679
            +   L T         T+TG+ K     L ++        N   +   +  +    L K
Sbjct: 178 NIAWALQTFRGARFTRVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQK 237

Query: 680 IKSTY---ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
                    +S  N I       H+     ST TGR A   PNL  +          R  
Sbjct: 238 WLGQLSEGTNSWFNSIEGDGCIHHS--CTLSTQTGRNAHRGPNLGQVVS----APWAREL 291

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F+  P   ++ AD   +ELR+L H          F++      +V  +I   N ++V   
Sbjct: 292 FVPHPGHIMVGADLEGLELRLLGHY------LAAFDSGSFAEVVVNGDIHQQNADRVGC- 344

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAA------DYIKRYFHRFPGIHEYIEKTK 850
            R   KT+ ++ IYG    +L   L+   S+A       +  +++    PG+   ++  K
Sbjct: 345 TRTQVKTLTYAFIYGAGDVKLGHSLQPELSDAQKKTLGGELRRKFLDAIPGLEPLVDAVK 404

Query: 851 NFVRQNGYVETIFGR 865
             VR  G ++ + GR
Sbjct: 405 LKVRSTGRLKGLDGR 419


>gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703]
          Length = 699

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 99/698 (14%), Positives = 209/698 (29%), Gaps = 172/698 (24%)

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             +     +  VE + I  +++    S    T   ++   LK + ++        N  +D
Sbjct: 17  IKNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFD 76

Query: 473 KLVLHRYGIS------MRGFEDIML--MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           + ++ R+ +       +  + D M+  +++ L  G     +  + +       K   K  
Sbjct: 77  RTMM-RHDMPSVIAGGIERWRDTMVKALAHGL-PG----GLGVLCEILGITQDKAKDKEG 130

Query: 525 KSSIPI--------DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV--YERLDK 574
           K+ I +          I  +  + H  E    +      +     ++K L V  Y+  + 
Sbjct: 131 KALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKLPVWNYQGKEL 190

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634
            +      +   G+Q+D  +L +        + ++ +    L+    NL+   ++     
Sbjct: 191 ALWHFDQLINDRGVQMDT-VLAE------AAVTAVVDEQKLLAKRTQNLT-DNEVQAATQ 242

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR----QLSKIKSTYADSLPN 690
                    ++         +   +    D  +   + E      Q S   ++   +L  
Sbjct: 243 RDALLRHIVESFGVDLPDMQKSTLERRIADPELPSVLRELLAIRLQASTTSTSKYKTLLK 302

Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI----------------- 733
            ++K  +   T     ++ TGR A      QN+P      + I                 
Sbjct: 303 GVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLLFD 362

Query: 734 ----------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN---------- 773
                     R   ++P  KKL+ +D S IE R+LA +A      + F +          
Sbjct: 363 NVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDEG 422

Query: 774 ------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLR 822
                   D++++  A  F ++ + V+   R+  K +   + +G        F L   L 
Sbjct: 423 GEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYGLD 482

Query: 823 IP---------------RSEAADYIKR-----------------------YFHRFPGIHE 844
           +                R   + Y                          + +  P    
Sbjct: 483 LDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSEQVFIACDSLKRMWRNAHPETVS 542

Query: 845 YIEKTKNFVR------QNGYVETIFGRRI---------------HYDEIN---------- 873
           +  + +N VR      +  +V      R                 Y  I           
Sbjct: 543 FWSEIENTVRRAIINPKQTFVCRKLKIRRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMG 602

Query: 874 ----SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
               S K                Q +A D+    M  +           ++ L +HDE++
Sbjct: 603 VNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEAR------GYEITLTVHDEVL 656

Query: 930 FEVPEEEI---TTASQIIVHSMEKACLPKINLRVPLKV 964
            E P+ +       S+++      A  P+  L +PL  
Sbjct: 657 TEAPDTDAFTSDKLSELL------ATNPEWALDLPLSA 688


>gi|262212113|gb|ACY35673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 28/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR--IPRSEAADYIKRY 835
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++       +    A    K  
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEV 109

Query: 836 FHRFPGIHEYIEK---TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
              +    + ++K         + G+++ + GR+I  D            +   A+N  +
Sbjct: 110 RQAYIEAIDVLDKLLGAIKKASERGFIKALDGRKIIVD------------SPHKALNYCL 157

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 158 QGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|228969098|ref|ZP_04130012.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228790587|gb|EEM38274.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 388

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 136/388 (35%), Gaps = 58/388 (14%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L +         +   + F    I+I I  +D        ++     LS + S       
Sbjct: 5   LHSQAYTFIDTKSTGSNPFKDSIISITIGFMDNS-FFYIPIKPFKHRLSQNIS------T 57

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGR 500
              +  +  L    E +  L I  N K     L+    + I+   F D  + + +L+   
Sbjct: 58  LSLEYTMKKLSPLLEKDTLL-ILSNSKQHIHALYNWCNFDITYNIFWDTEIAANLLNENH 116

Query: 501 SS--------HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
                     + +  +  K       +  K        D++        A  +  ++  +
Sbjct: 117 PKGVKEWYKEYVLPRLISKGTILNTMDSKKYMFEKTLYDQLQHHVATYFACYDIFMLKSV 176

Query: 553 WLLLR-----PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL-KQVSAEISKNL 606
           +   +     PK  +  +  ++  ++ P+I V++  E  GI+I+++ L   V   +   L
Sbjct: 177 FEYQKRIFENPKFNLVHIYKLFREIEMPLIAVLTTAERKGIKINEEFLSNDVKQILQAKL 236

Query: 607 LSLEENIYDLSGEK--------------------------FNLSSPKQLGDILF-TKLKF 639
            S+++ I +  G                            FN++SP  L   L+      
Sbjct: 237 QSVKKEILNHLGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAIL 296

Query: 640 PSGAKTKTG-----QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
               +   G         T +     N   +P+I  ILE+R+L K+ S++ +SLP     
Sbjct: 297 KPIMEYDKGCKSLISKLKTDRKTLIRNLSMHPVIPLILEYRRLVKLISSFCNSLPKEQQG 356

Query: 695 R-TQRVHTFYSLASTMTGRLASLEPNLQ 721
               ++H  Y+   T TGR++   PNL+
Sbjct: 357 TIDNKIHPIYNSVGTKTGRMSCSSPNLK 384


>gi|309386062|gb|ADO66949.1| DNA polymerase type I [Enterococcus faecium]
          Length = 83

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           V FD    TFR E+Y +YK  R K P     Q+P +R      G+   E+  +EADDII 
Sbjct: 2   VAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDIIG 61

Query: 123 TYTYIAEKEGFAVTIISTDKDL 144
           T     +K+ F V ++S D+DL
Sbjct: 62  TLAEKVDKDQFDVVVLSGDRDL 83


>gi|229472321|gb|ACQ72675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  104 bits (259), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDADCR----ELFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + A+ 
Sbjct: 51  DILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+   +E  K   + +  +  I GR+I    +NSP           A+N  
Sbjct: 110 RRAYLDAIPGLERLVEAVKTKAKVDRSLRAIDGRKIL---VNSP---------HKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R ++  H  L+D  +  +    IHDE
Sbjct: 158 LQSSAGVIAKRWLLITHDRLQD--IEHERYAFIHDE 191


>gi|32442309|gb|AAP82225.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score =  104 bits (259), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 161/435 (37%), Gaps = 73/435 (16%)

Query: 488 DIMLMSYVLDSGRSSHDI----ASIAQKWLSYTRKEI----LKSRKSSIPIDKISD---- 535
           D +++S +     S  D       + Q+       E     LK  K     +  +D    
Sbjct: 1   DTLVLSSLYYPNISDRDYERRPDGMPQRLYGRHSLEAWGYRLKRFKGDFAKNDSNDWSTY 60

Query: 536 -SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++ ++ I+++ V L+L+ LL+ ++        Y +L+  M  +++Q E +G + D D 
Sbjct: 61  TPEMLDYCIQDTQVTLRLYELLQRRMET---YADYIKLEMDMAMLMAQQEASGFRFDMDA 117

Query: 595 LKQVSAEISKNLLSLEENIYDL---------------------SGEK------FNLSSPK 627
             +V A +     S+ ++I  +                     +G        FN +S +
Sbjct: 118 AVRVRATLQDEFDSITKSIAAIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQ 177

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--------NCGDNPIIKNILEWRQLSK 679
            +   L T         T+TG+ K     L ++        N   +   +  +    L K
Sbjct: 178 NIAWALQTFRGARFTKVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQK 237

Query: 680 IKSTY---ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
                    +S  N I       H+     ST TGR A   PNL  +          R  
Sbjct: 238 WLGQLSEGTNSWFNSIEGDGCIHHS--CTLSTQTGRNAHRGPNLGQVVS----APWAREL 291

Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
           F+  P   ++ AD   +ELR+L H          F+       +V  +I   N ++V   
Sbjct: 292 FVPHPGHVMVGADLEGLELRLLGHY------LAAFDQGSFAEVVVNGDIHQQNADRVGC- 344

Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAA------DYIKRYFHRFPGIHEYIEKTK 850
            R   KT+ ++ IYG    +L   L+   S+A       +  +++    PG+   ++  K
Sbjct: 345 TRTQVKTLTYAFIYGAGDVKLGHSLQPELSDAQKKTLGGELRRKFLDAIPGLEPLVDAVK 404

Query: 851 NFVRQNGYVETIFGR 865
             VR  G ++ + GR
Sbjct: 405 LKVRSTGRLKGLDGR 419


>gi|262212053|gb|ACY35643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + G +I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGGKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472539|gb|ACQ72784.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKEKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 669

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 94/660 (14%), Positives = 196/660 (29%), Gaps = 172/660 (26%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS------MRGFEDIML--MSYVLDSGRSS 502
             LK + ++        N  +D+ ++ R+ +       +  + D M+  +++ L  G   
Sbjct: 25  EDLKAYLQDPSIEIYAQNSHFDRTMM-RHDMPSVIAGGIERWRDTMVKALAHGL-PG--- 79

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPI--------DKISDSQVQEHAIENSNVILQLWL 554
             +  + +       K   K  K+ I +          I  +  + H  E    +     
Sbjct: 80  -GLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGN 138

Query: 555 LLRPKLIVEKLLHV--YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            +     ++K L V  Y+  +  +      +   G+Q+D  +L +        + ++ + 
Sbjct: 139 DIEAMRAIDKKLPVWNYQGKELALWHFDQLINDRGVQMDT-VLAE------AAVTAVVDE 191

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
              L+    NL+   ++              ++         +   +    D  +   + 
Sbjct: 192 QKLLAKRTQNLT-DNEVQAATQRDALLRHIVESFGVDLPDMQKSTLERRIADPELPSVLR 250

Query: 673 EWR----QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728
           E      Q S   ++   +L   ++K  +   T     ++ TGR A      QN+P    
Sbjct: 251 ELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVL 310

Query: 729 LGQKI---------------------------RRAFISPPTKKLISADYSQIELRILAHI 761
             + I                           R   ++P  KKL+ +D S IE R+LA +
Sbjct: 311 DQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWL 370

Query: 762 AKITPLYQVFEN----------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A      + F +                  D++++  A  F ++ + V+   R+  K + 
Sbjct: 371 AGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVME 430

Query: 806 FSIIYGISP-----FRLATQLRIP---------------RSEAADYIKR----------- 834
             + +G        F L   L +                R   + Y              
Sbjct: 431 LGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSE 490

Query: 835 ------------YFHRFPGIHEYIEKTKNFVR------QNGYVETIFGRRI--------- 867
                       + +  P    +  + +N VR      +  +V      R          
Sbjct: 491 QVFIACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPKQTFVCRKLKIRRDGSWLRIQL 550

Query: 868 ------HYDEIN--------------SPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
                  Y  I               S K                Q +A D+    M  +
Sbjct: 551 PSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLI 610

Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEI---TTASQIIVHSMEKACLPKINLRVPLKV 964
                      ++ L +HDE++ E P+ +       S+++      A  P+  L +PL  
Sbjct: 611 EAR------GYEITLTVHDEVLTEAPDTDAFTSDKLSELL------ATNPEWALDLPLSA 658


>gi|238695631|ref|YP_002922658.1| P44 [Xanthomonas phage phiL7]
 gi|190343998|gb|ACE75784.1| P44 [Xanthomonas phage phiL7]
          Length = 330

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 102/296 (34%), Gaps = 64/296 (21%)

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV------------- 788
             K++ +D+  +E+ + A + +   L       LD+H + A + +G              
Sbjct: 6   GGKIVQSDFKSLEIYVQAALTQCIQLVADLIAGLDMHVLRAEQAWGRAEGRDYAYILKAA 65

Query: 789 -----NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                       ++R +AK  +F   YG    ++A    +   +    I+    R+P + 
Sbjct: 66  QDENHPEHAKWSELRSNAKVFSFQRAYGAGVAKIAATTGMSVEDVEALIEAEAERYPELI 125

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEI------------------------------- 872
            YIE   +++++N  V T   R   + +I                               
Sbjct: 126 SYIEDITDYIKENR-VPT--SRYCQHPQIPGMQCQLGRSHYITPDGKMYSYSESPSPEFV 182

Query: 873 ----NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM---LLQIH 925
                S   + ++ +     N  +QG+  + T+ AM    ++         M   +  +H
Sbjct: 183 AKRPASRGGTPQSFSPTEIKNYVVQGTGGEWTKAAMYLAVRAFYRRGNFGGMALLVNTVH 242

Query: 926 DELVFEVPEEEITTASQIIVHSMEKA---CLPKINLRVPLKV--NIKVSNNWQEEN 976
           D +  +   E    A+ ++  +M +A          ++PL V    K  +   +E+
Sbjct: 243 DAIYLDASAETCHDAAAMLEAAMFEASTYMEFWFKWKLPLGVPTETKYGDCMMDEH 298


>gi|328462170|gb|EGF34317.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 79

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 47/74 (63%)

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            ++AL GD+ DN PG+  +G K A+ L+Q+YG++E I  +   +K+ K +EN++   + A
Sbjct: 1   DMKALMGDNSDNYPGVTKVGPKIASRLIQKYGSVEGIYDHIDEMKKSKLKENLINDKDKA 60

Query: 241 RLSRKLVMLRTDVP 254
            L++KL  +  D P
Sbjct: 61  FLAKKLATIDRDSP 74


>gi|262212333|gb|ACY35783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFILTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212235|gb|ACY35734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ +  +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYEFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262363933|gb|ACY60652.1| putative exonuclease [Yersinia pestis D106004]
          Length = 309

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 120/309 (38%), Gaps = 39/309 (12%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68
           +DG+S  Y  ++      + H+G + V A  GF   + +         +     +++D  
Sbjct: 1   MDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD-G 50

Query: 69  AVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
               R + YP+YKANR       K+ E    Q P +     A G+  +  +  EADD+  
Sbjct: 51  FSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDLAG 110

Query: 123 TYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIPPE 177
                   +     + +++ D D +QLV             K ++++ E   +  G+P  
Sbjct: 111 MLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGLPTP 170

Query: 178 K-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR----IKQKKRREN 232
           +  +  +AL GD+ DNI G+ GIG   A  LL E+G++  ++   +     I + + +  
Sbjct: 171 RAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVRGINDGSIVINKGRYKTA 230

Query: 233 ILEYAETARL----SRKLVMLRTDVPITIPLE-HLILEDC-------NGPRLISFLKALE 280
             + A+ A       R L   + ++ +   ++      +        +          L 
Sbjct: 231 FNKLAKNAFNEKTGCRMLEAFKRNMMLMNLIDTKFPPSEIESIKGARDMNAFEQMCCELN 290

Query: 281 FTKLINRVA 289
           F   +  + 
Sbjct: 291 FRSFLEDLE 299


>gi|262212157|gb|ACY35695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 28/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGCYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR--IPRSEAADYIKRY 835
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++       +    A    K  
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEV 109

Query: 836 FHRFPGIHEYIEK---TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
              +    + ++K         + G+++ + GR+I  D            +   A+N  +
Sbjct: 110 RQAYIEAIDVLDKLLGAIKKASERGFIKALDGRKIIVD------------SPHKALNYCL 157

Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 158 QGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212201|gb|ACY35717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI    + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTLGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++      P      + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSHDKPLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAVKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212389|gb|ACY35811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCRSQLAFIHDE 192


>gi|229472613|gb|ACQ72821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 30/206 (14%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
             RR F + P   ++ AD S IELR+LAH          +++      ++  +I   N +
Sbjct: 11  NFRRLFCASPGHIMVGADLSGIELRMLAHY------LARYDDGRYGDILLHGDIHQENAD 64

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADYIKRYFHRFPGIHEY 845
           K+    RR  KT+ ++ +YG    R+             + +  +  + Y    PG+ + 
Sbjct: 65  KIGI-SRRLVKTVTYASLYGAGDQRIGESYDQSLPPDKAKQKGKEIRQAYMDAIPGLEKL 123

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +E TK      G++ +I GR I+ D            +   A+N  +Q SA  I +R M+
Sbjct: 124 VEATKK-AADRGFIRSIDGRHINVD------------SSHKALNMLLQSSAGCIAKRWMV 170

Query: 906 SVHKSLE----DHKLATKMLLQIHDE 927
             + +      ++   T  L  IHDE
Sbjct: 171 IANDNFPTIDNEYLAHTHQLAFIHDE 196


>gi|262212171|gb|ACY35702.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  +T+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVETVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212197|gb|ACY35715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  103 bits (257), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ ++G    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLFGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ +  E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLPEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi]
 gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi]
          Length = 1429

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 95/226 (42%), Gaps = 25/226 (11%)

Query: 371  IVNTKDIQQWVQKLET-IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I+N K+  + +  +   I      + T  ++ F  K   I I+  +              
Sbjct: 1225 IINDKNYNEKINYIYNGIKYCGLDMETTGLEVFGEKIRLIQIAVENYPVIIY-------- 1276

Query: 430  DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
                         N     IL  L+K   +E+ +KI  N K+D   L     ++    D 
Sbjct: 1277 ----------DMFNITNNNILDGLRKILNDENIVKIIQNGKFDTKFLLYNNFNITNIFDT 1326

Query: 490  MLMSYVLDSGRSSHD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             + S +LD  ++ +   + +I +K+LS     + K +++S+  + + ++    +A  +S+
Sbjct: 1327 YIASKLLDKNKNMYGFKLNNIVEKYLSVY---LDKQQQNSVWNNSLLNNNQLFYAARDSS 1383

Query: 548  VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             +L+L+  L  +++ E +  +   ++   I  +  ME+ GI +D +
Sbjct: 1384 CLLKLYKKLSEQIVAENM-QIVNDIENKCILPICDMELNGITVDLE 1428


>gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171]
 gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171]
          Length = 687

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 91/603 (15%), Positives = 184/603 (30%), Gaps = 137/603 (22%)

Query: 458 ENEHFLKIGHNIKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            +   L   HN  +D+ VL     R    +  + D M+ +    +      +  + +   
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQAL---AHGLPGSLGELCEVLG 118

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYER 571
               K   K  K+ I +      +  +     S    + W        L +E +  VY+R
Sbjct: 119 VPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKR 178

Query: 572 L--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           L        +  +     Q+   G+ +D +L +     + +    L +   +++  +   
Sbjct: 179 LPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQA 238

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           ++ +   D L   +    G +    Q  T  + +   +   + + + +    Q S   ++
Sbjct: 239 ATQR---DALIKHIVESYGVELPDMQRSTLERRIADPDLP-SAVKELLAIRLQASTTSTS 294

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI---------- 733
              +L   ++   +   T     ++ TGR A      QN+P  +   ++I          
Sbjct: 295 KYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAG 354

Query: 734 -----------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--- 773
                            R   I+P  KKL+ +D S IE R+LA +A        F     
Sbjct: 355 CADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDA 414

Query: 774 --SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLRIP-- 824
               D++++  A+ F +  + V   MR+  K +   + YG        F L   L +   
Sbjct: 415 GTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDEL 474

Query: 825 -------------RSEAADYIKR-----------------------YFHRFPGIHEY--- 845
                        R   + Y +                        +    P   ++   
Sbjct: 475 ANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVFIACDSLKRLWRRAHPATCDFWYE 534

Query: 846 IEKTKNFVRQN-------GYV---ETIFGRRIHYDEINS--------------------- 874
           +E+T              GY+         RI      +                     
Sbjct: 535 LERTVRTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594

Query: 875 -PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
             K           +    Q +A DI    M  +  +         ++L +H+E++ E P
Sbjct: 595 SRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDA------GYSIVLTVHNEVITEAP 648

Query: 934 EEE 936
           + E
Sbjct: 649 DTE 651


>gi|229472499|gb|ACQ72764.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDADCR----ELFITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + A+ 
Sbjct: 51  DILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+   +E  K   + +  +  I GR+I    +NSP           A+N  
Sbjct: 110 RRAYPDAIPGLERLVEAVKTKAKVDRSLRAIDGRKIL---VNSP---------HKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVIAKRWLLITHDRLQ--GIEHERYAFIHDE 191


>gi|262212147|gb|ACY35690.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGADDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A++  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALSYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212213|gb|ACY35723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 26/203 (12%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  FI  P + ++ AD + IELR+L+H          ++N      ++  +I  VN 
Sbjct: 9   HRFRELFILTPGQVMVGADLAGIELRMLSHF------LARYDNGRYADILLNGDIHQVNA 62

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 63  DKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 121

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +E  K    + G+++ + GR+I  D            +   A+N  +QG++A + +R M
Sbjct: 122 LLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYCLQGNSAILAKRWM 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +    +L+   L    L  IHDE
Sbjct: 169 VINQNNLKLLNLCCSQLAFIHDE 191


>gi|149408172|ref|YP_001294606.1| hypothetical protein ORF013 [Pseudomonas phage PA11]
          Length = 624

 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 90/641 (14%), Positives = 205/641 (31%), Gaps = 124/641 (19%)

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI-KYDKLVLHRY-GISMRG-F 486
              +H           +      ++ FF N   +  GHNI +YD   + R   I +    
Sbjct: 14  PTKIHCLSVMKNGKLFSTTDYDKMRSFFRNAKII-GGHNIYRYDIPNIERLLDIKVECKL 72

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D + +S+ L+  R  H +A           +E    +      + ++  +      E+ 
Sbjct: 73  VDTLPLSWYLEPARKRHGLAE--------WGEEFGVPKPKVDDWENLAVEEYIHRCEEDV 124

Query: 547 NVILQLWLLLRPKLI----VEKLLHVYERLDKPMIDVVSQMEITGIQID----------- 591
            +  +LW     +L         +  +       +D  ++ E +  ++D           
Sbjct: 125 KINTKLWERQWKQLSKLYGEPDKVWKFIDYIMFKMDCAAEQERSRWKLDVVHCKTTLKKL 184

Query: 592 ----------------------------QDLLKQVSAEISKNLLSLEENI---------- 613
                                       +  LK     +S+   +    +          
Sbjct: 185 EKLKEEKVEELRLAMPHVPVMASKEKPKKMYLKNKPNTLSEQGKAWVALLEEQGLPEDYE 244

Query: 614 ----YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD----- 664
               Y    ++ N  S +Q+   L++    P     K  +     + +EQ+         
Sbjct: 245 GVVEYIKDWKEPNPGSHEQIKSWLYSLGWVPETFAYKRNKETGEVKKIEQVQQDKTLGPG 304

Query: 665 -----------NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
                       P ++ IL+   +   + +  +   N+++              T T R 
Sbjct: 305 LCASVKKLYGKEPKLE-ILDGLSILTHRISVLNGFLNNVDDEGYV--QAKVQGLTNTLRF 361

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP---LYQV 770
              E  +    +    G  IR   ++P   +L+ +D S +E R   H         + ++
Sbjct: 362 KH-EVVVNLPGVDKPYGADIRGCLVAPKGYELVGSDMSSLEDRCKQHYMWPYDPEYVKEM 420

Query: 771 FENSLDIHRMVA---------------AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
            +   D H  +A               A       E +   +R+  K++N++ +YG    
Sbjct: 421 IKPDFDPHLDLAVFAGALSSHEVELYKAGFLKKEEEGLVKAIRKVYKSVNYACVYGAGGP 480

Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875
           R+A    +   E    +  Y+ R   +    E           V+   G +  ++ ++  
Sbjct: 481 RVAITAGVTMDEGYKLVDAYWQRNWSVKRIAEDQI--------VKVCNGMKWLFNPVSGF 532

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
             S+R+  +R   +   QG+        +  + +         ++  Q HDE+V  + + 
Sbjct: 533 WYSLRHEKDR--FSTLNQGTGVYCFDTWVRHIREE------RPQLTAQFHDEVVLCIRKG 584

Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                + ++  +M+K     +NL   L+ +I+  +++ + +
Sbjct: 585 FREQCTALLHRAMDK-TNKFLNLNRELECSIEYGDSYSDIH 624


>gi|262342227|gb|ACY54624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       ++R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRLRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  +T+ ++ +YG    ++             + +  + 
Sbjct: 51  VILLNGDIHQVNADKIGI-SRKLVRTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212121|gb|ACY35677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212127|gb|ACY35680.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + +  AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMAGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI------PRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEATDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINRNNLKLLNLCCSQLAFVHDE 192


>gi|262342265|gb|ACY54643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            + R A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPRKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212411|gb|ACY35822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 37/204 (18%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN---SLDIHRMVAAEIFGVN 789
            RR F++ P + ++ AD S IELR+LAH       Y  F +   + DIH++ A +I    
Sbjct: 12  YRRLFMATPGQVMVVADLSGIELRMLAHYLARYDTY--FGDNLLNGDIHQINADKI---- 65

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR--IPRSEAA----DYIKRYFHRFPGIH 843
                   R+  KT+ ++ +YG    ++       +   +A     +  + +    PG+ 
Sbjct: 66  -----GISRKLVKTVCYAFLYGAGLEKIGYSYDRLLSPQKAKAKGREIKEAFIEAIPGLS 120

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           E +   K+     G+V+ I GR+I  D            +   A+N  +QGSA  I +R 
Sbjct: 121 ELLGAVKS-AANRGFVKGIDGRKILVD------------SPHKALNYLLQGSAGVIAKRW 167

Query: 904 MISVHKSLEDHKLATKMLLQIHDE 927
           M+  H    D+      L  IHDE
Sbjct: 168 MVIAH----DNNYCASQLAFIHDE 187


>gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3]
          Length = 502

 Score =  102 bits (254), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 113/391 (28%), Gaps = 120/391 (30%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            Q    D  I  ++ E   +     T       +L   ++   +   T     ++ TGR 
Sbjct: 80  LQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRW 139

Query: 714 ASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTKKLI 746
           A       N+P  T     I                           R   I+PP KKL+
Sbjct: 140 AGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLV 199

Query: 747 SADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            +D S IE R+LA +A        F         D++++  A  F +  E V+ + R+  
Sbjct: 200 ISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIG 259

Query: 802 KTINFSIIYGISP-----FRLATQLRIP---------------RSEAADYIKR------- 834
           K +   + YG        F LA  L +                R     Y K        
Sbjct: 260 KVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVKREAMRWYQKSVETDKTY 319

Query: 835 ----------------YFHRFPGIHEY---IEKTKNFV----------------RQNGYV 859
                           + +  P    +   IE                      R  G++
Sbjct: 320 GLSEKIFVTCDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCRKLSVRRDKGWL 379

Query: 860 ETIF--GRRIHYDEINSPKSSIRNINERAA--------------INAPIQGSAADITRRA 903
                 GR + Y    +    I  +                   I    Q +A D+    
Sbjct: 380 RICLPSGRSLCYPSARTENGQITYMGTNPYSRKWERLKTYGGKIIENICQSTARDVLAYN 439

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
           M  + K+        +++L +HDE++ E P+
Sbjct: 440 MPPIEKA------GYEIVLTVHDEIISEAPD 464


>gi|262342205|gb|ACY54613.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          +++    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHGYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A++  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALDYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3]
 gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2]
          Length = 726

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 78/520 (15%), Positives = 161/520 (30%), Gaps = 76/520 (14%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
               T +     +    +      +   T   + T   D       D T  + +  ++  
Sbjct: 6   LDFETFS----EADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLHR 61

Query: 452 YLKKFFE-NEHFLKIGHN-IKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSH--- 503
            L++  + N     + HN   +D+L++     + I +    D M+ ++        H   
Sbjct: 62  ALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAF-------RHALP 114

Query: 504 -DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN--SNVILQLWLLLRPKL 560
             + ++ +  L  +  +  K ++    I + S    + + I    +      W L     
Sbjct: 115 GSLDALCEV-LGVS-ADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYA 172

Query: 561 IVE--KLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           + +   +  V+ +L        +  ++++   +   G ++D  L +     + K+   L+
Sbjct: 173 VSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQ 232

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           E      G           G      L+  + A       K+T  DL   +   +     
Sbjct: 233 EEAQRKYGGSLT-------GKDFLPILRELAPAHRIHNAQKSTLNDLLADDDLPDDARTI 285

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI----K 726
           I      +   ST  + L    +   +R        +  T R A      QN+       
Sbjct: 286 IEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHD 345

Query: 727 TDLGQKI----------------------RRAFISPPTKKLISADYSQIELRILAHIAKI 764
            +L + I                      R   I     K + ADYS +E R LA +A  
Sbjct: 346 DELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGE 405

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ---MRRHAKTINFSIIYGISPFR---LA 818
                 F   LDI+ + A ++FG+  + +  +   +R+  K     + Y          A
Sbjct: 406 ETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFA 465

Query: 819 TQLRIPRSEAADYIKRYFHRF---PGIHEYIEKTKNFVRQ 855
             L +   + A  +   F           Y        ++
Sbjct: 466 KNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKR 505



 Score = 42.0 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           ++G V T    +   +   + +   +       +    Q    D+   A+++V  +    
Sbjct: 616 EDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEAN---- 671

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
                ++L +HDE++ E P+      ++ +   M    LP+     PL   
Sbjct: 672 --GYPIVLHVHDEIICETPDLPEYNVAE-LERLM--CELPEWAEGFPLVAE 717


>gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H]
          Length = 726

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 77/520 (14%), Positives = 161/520 (30%), Gaps = 76/520 (14%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
               T +      K +  + +  +            F D  V     + G + +  ++  
Sbjct: 6   LDFETFSEADL--KKVG-SYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSD-MPGDLHR 61

Query: 452 YLKKFFE-NEHFLKIGHN-IKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSH--- 503
            L++  + N     + HN   +D+L++     + I +    D M+ ++        H   
Sbjct: 62  ALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAF-------RHALP 114

Query: 504 -DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN--SNVILQLWLLLRPKL 560
             + ++ +  L  +  +  K ++    I + S    + + I    +      W L     
Sbjct: 115 GSLDALCEV-LGVS-ADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYA 172

Query: 561 IVE--KLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610
           + +   +  V+ +L        +  ++++   +   G ++D  L +     + K+   L+
Sbjct: 173 VSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQ 232

Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670
           E      G           G      L+  + A       K+T  DL   +   +     
Sbjct: 233 EEAQRKYGGSLT-------GKDFLPILRELAPAHRIHNAQKSTLNDLLADDDLPDDARTI 285

Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI----K 726
           I      +   ST  + L    +   +R        +  T R A      QN+       
Sbjct: 286 IEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHD 345

Query: 727 TDLGQKI----------------------RRAFISPPTKKLISADYSQIELRILAHIAKI 764
            +L + I                      R   I     K + ADYS +E R LA +A  
Sbjct: 346 DELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGE 405

Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ---MRRHAKTINFSIIYGISPFR---LA 818
                 F   LDI+ + A ++FG+  + +  +   +R+  K     + Y          A
Sbjct: 406 ETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFA 465

Query: 819 TQLRIPRSEAADYIKRYFHRF---PGIHEYIEKTKNFVRQ 855
             L +   +    +   F           Y        ++
Sbjct: 466 KNLGLDLVDMTKTMDGTFPDHIWAATARGYEWARIQEAKR 505



 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           ++G V T    +   +   + +   +       +    Q    D+   A+++V  +    
Sbjct: 616 EDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEAN---- 671

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
                ++L +HDE++ E P+      ++ +   M    LP+     PL   
Sbjct: 672 --GYPIVLHVHDEIICETPDLPEYNVAE-LERLM--CELPEWAEGFPLVAE 717


>gi|229472393|gb|ACQ72711.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  102 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D  + +    I+ P  KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDADCRELL----ITRPGWKLVDSDLAGIELRVFAHYLGR------YDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSEAADY 831
             ++  +I  VN +K+    RR  KT+ ++ +YG S  ++ T           R + A+ 
Sbjct: 51  DILLNDDIHQVNADKIGI-SRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+   +E  K   + +  +  I GR+I    +NSP           A+N  
Sbjct: 110 RRAYLDAIPGLERLVEAVKTKAKVDRSLRAIDGRKIL---VNSP---------HKALNFL 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R ++  H  L+   +  +    IHDE
Sbjct: 158 LQSSAGVIAKRWLLITHDRLQ--GIEHERYAFIHDE 191


>gi|262342097|gb|ACY54559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  102 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    K R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----KFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|153799363|gb|ABS50441.1| DNA polymerase I [Enterococcus phage F4]
          Length = 299

 Score =  102 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 106/278 (38%), Gaps = 16/278 (5%)

Query: 373 NTKDIQQWVQKLETI--GSASFKIIT----DTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           N  ++  W+           +    T       D +  +    +++   + +  +  V  
Sbjct: 2   NIVELASWIDNALECDNEYLAMDFETVGDNGGTDMYREEISGFSLTYRYKGEIINGYVPM 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMR- 484
                       S       K     +K+ FE++    + HN  +D  L     GI+ R 
Sbjct: 62  RHR---EEDGSPSHLNIANVKWAEEGIKRVFESDKAT-VWHNATFDMGLAKASLGIAPRT 117

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D +++ ++LD    S+ +  +A ++L+       +    +     I+    + +A +
Sbjct: 118 PVHDTLILMHLLDEDLPSYQLKVLATRFLNIPSDTFEEMFGKNAKFADIAVEIARWYAGK 177

Query: 545 NSNV--ILQLWLL-LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           ++ V  +L  W L +  K    K+  VYER+++P I    +ME  G  I+ + ++    E
Sbjct: 178 DTYVGFLLFEWQLNILNKPSFAKIKKVYERIERPCIMATFEMESEGFHINMEEVEVQRKE 237

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
               L  +   +    G+  N SSP QL  +L+    +
Sbjct: 238 SEAELEEISARLQARFGD-VNFSSPSQLLKLLYVDNDW 274


>gi|229472203|gb|ACQ72616.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  102 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLPSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262342199|gb|ACY54610.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  102 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGADDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A++  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALSYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group]
 gi|113623082|dbj|BAF23027.1| Os08g0175600 [Oryza sativa Japonica Group]
          Length = 570

 Score =  102 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 135/399 (33%), Gaps = 80/399 (20%)

Query: 312 KGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS---- 367
            G   E       T+++S       +T+ +  +  P K   +R+ +     I + +    
Sbjct: 179 DGSKEEIPWHDSVTVESSLPKVSKSETTLVVDKAIPNKKEHKRITRKVTLNIPDKASLST 238

Query: 368 ------------YTKIV--NTKDIQQWVQKLETIGSASF----KIITDTMDAFHSKPIA- 408
                       Y K++  +  +  + V KL T     F          +D     P+  
Sbjct: 239 ESKNARKLLATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDVKEETPVGH 298

Query: 409 ---IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              I  S      D          D     +          +++L     FFE+    K+
Sbjct: 299 GEVICFSIYSGNSD-------GEADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKV 351

Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS---SHDIASIA--QKWLSYTRKE 519
            HN  +D  V+   GI + GF  D M ++ + DS R     + +  +    + ++   K+
Sbjct: 352 WHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKD 411

Query: 520 ILKSRK-------------------SSIPIDKISDSQVQE------HAIENSNVILQLWL 554
           I K+ K                    +I I+ +   Q ++      ++  +S   L+L+ 
Sbjct: 412 IHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICYSSLDSMSTLKLYE 471

Query: 555 LLRPKLIVEK----------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            L+ KL  ++          +   YE   +P   ++ +ME  G+ +D+  L ++      
Sbjct: 472 SLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMETEGMFVDRAYLSEIEKTAVV 531

Query: 605 NLLSLEENIYDLSGEK------FNLSSPKQLGDILFTKL 637
                 +     + +        N++S  Q+  + F  +
Sbjct: 532 ERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGI 570


>gi|262212077|gb|ACY35655.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + +  AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMAGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI------PRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHRVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINRNNLKLLNLCCSQLAFIHDE 192


>gi|229472195|gb|ACQ72612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYGKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|229472233|gb|ACQ72631.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342135|gb|ACY54578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212069|gb|ACY35651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 30/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++               +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           +QG++A + +R M+    +L+   L    L  IHD
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHD 191


>gi|262342259|gb|ACY54640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 90/211 (42%), Gaps = 30/211 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLL 922
           +QG++A + +R M+    +L+   L    L 
Sbjct: 157 LQGNSAILAKRWMVINQDNLKLLNLCCSQLA 187


>gi|47934708|gb|AAT39792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E              I + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +N  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFKKKTEKGNVIVDEKV---LNSIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 RLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
 gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
          Length = 693

 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 110/723 (15%), Positives = 215/723 (29%), Gaps = 193/723 (26%)

Query: 390 ASFKIIT-------DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
               + T       +   A+ +    + I+        S    T   +L V         
Sbjct: 5   LWLDLETYSETPIRNGTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVP-------- 56

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-------GI---SMRGFEDIML- 491
                     L     +   L   HN ++D+ VL  +        +    +  + D M+ 
Sbjct: 57  ----------LCTALRDGETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVK 106

Query: 492 -MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
            +++ L  G  S D+  I    L   + +       ++ I      + +  AI  +    
Sbjct: 107 ALAHGL-PGSLS-DLCDI----LGVAQDKAKDKAGKAL-IQLFCKPRAKNSAIRRA--TK 157

Query: 551 QLWLLLRPK------LIVEKLLHV--------YERLDKPMIDVVSQMEITGIQIDQDLLK 596
           Q       +      L +E +  +        Y+  +  +     ++   G+Q+D  L +
Sbjct: 158 QTHPEEWKRFIDYAGLDIEAMREIDKKLPVWNYQSNELALWHFDQRINDRGVQMDTVLAE 217

Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656
              + +      L     DL+  +   ++ + +       LK    A   T      +  
Sbjct: 218 AAVSAVEIEQKRLAVRTQDLTDNEVQAATQRDVL------LKHIVEAFGVTLPDMQASTI 271

Query: 657 LEQINCGDNPII--KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
             +++  D PI   + +    Q S   ++   +L   ++K  +   T     ++ TGR A
Sbjct: 272 QRRVSDPDLPIELRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWA 331

Query: 715 SLEPNLQNIPIK---------------------------TDLGQKIRRAFISPPTKKLIS 747
                 QN+P                               +   +R   ++P  KKL+ 
Sbjct: 332 GRLFQPQNLPRPVLGQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPEGKKLVV 391

Query: 748 ADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           +D S IE R L  ++      Q F +       D++ +  A  F ++ + V    R+  K
Sbjct: 392 SDLSNIEGRALVWLSGEEWKLQAFRDYDAGTGHDLYMLAYARAFNISPDNVDKIQRQIGK 451

Query: 803 TINFSIIYGISP-----FRLATQLRIP---------------RSEAADYIKR-------- 834
            +   + +G        F L   L +                R   + Y           
Sbjct: 452 VMELGLGFGGGVAAFLTFALVYGLDLDGLAKAALPNVPASIQREAQSWYKASVKQKRTYG 511

Query: 835 ---------------YFHRFPGIHEY---IEKTKNFV---------------RQNG---Y 858
                          + +  P    +   IE T                   R++G    
Sbjct: 512 LSEQVFIACDSLKRMWRNAHPKTVSFWYEIEDTVRRAIAAPRQTFTCRKLKIRRDGSWLR 571

Query: 859 VETIFGRRIHYDEIN--------------SPKSSIRNINERAAINAPIQGSAADITRRAM 904
           ++   GR + Y  I               S K                Q +A D+    M
Sbjct: 572 IQLPSGRAVCYPGIRIDEGKISYMGINSYSRKWQRLKTYGGKLTENVTQAAARDVMANNM 631

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI---TTASQIIVHSMEKACLPKINLRVP 961
             +  S        ++ L +HDE++ E P+ E       S+++      A  P+  L +P
Sbjct: 632 PLIETS------GYEITLTVHDEVLTEAPDTEQFTSDKLSELL------ATNPEWALDLP 679

Query: 962 LKV 964
           L  
Sbjct: 680 LSA 682


>gi|47934744|gb|AAT39810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E              I + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +N  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFKKKTEKGNIIVDEKV---LNSIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 RLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|262342201|gb|ACY54611.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N P+Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYPLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +   +L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYLLAFIHDE 191


>gi|255070583|ref|XP_002507373.1| predicted protein [Micromonas sp. RCC299]
 gi|226522648|gb|ACO68631.1| predicted protein [Micromonas sp. RCC299]
          Length = 1659

 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 880  RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
            R+ +ER A+N   QGSAAD+ +RAMI+V   L+        +LQIHDEL+FEV    +  
Sbjct: 1557 RSADERRAVNTACQGSAADVVKRAMIAVFDELD--PSLATPVLQIHDELLFEVDASRVVE 1614

Query: 940  ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            A++ +   ME+A   +  L VPL V +    NW +
Sbjct: 1615 AARAVRAIMERAG-DEFGLTVPLPVKVSAGANWGD 1648


>gi|262212381|gb|ACY35807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 37/204 (18%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN---SLDIHRMVAAEIFGVN 789
            RR F++ P + ++ AD S IELR+L+H       Y  F +   + DIH++ A +I    
Sbjct: 12  HRRLFMATPGQVMVGADLSGIELRMLSHYLARYDTY--FGDNLLNGDIHQLNADKI---- 65

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR--IPRSEAA----DYIKRYFHRFPGIH 843
                   R+  KT+ ++ +YG    ++       +   +A     +  + +    PG+ 
Sbjct: 66  -----GITRKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKAKAKGREIKEAFIEAIPGLS 120

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           + +   K+     G+V+ I GR+I  D            +   A N  +QGSA  + +R 
Sbjct: 121 DLLSAVKS-AANRGFVKGIDGRKILVD------------SPHKAPNYLLQGSAGVVAKRW 167

Query: 904 MISVHKSLEDHKLATKMLLQIHDE 927
           M+  +    D+      L  IHDE
Sbjct: 168 MVIAN----DNPFCCSQLAFIHDE 187


>gi|229472177|gb|ACQ72603.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472327|gb|ACQ72678.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472427|gb|ACQ72728.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342091|gb|ACY54556.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342095|gb|ACY54558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342101|gb|ACY54561.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342121|gb|ACY54571.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342139|gb|ACY54580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342249|gb|ACY54635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          +++    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDDGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|228907507|ref|ZP_04071364.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200]
 gi|228851999|gb|EEM96796.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200]
          Length = 235

 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 32/196 (16%)

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGI+   L+ QL I ++ A   I ++  + P    +  +T   V  NGYV+ +FGR+  
Sbjct: 3   LYGITEIGLSDQLNITKAAATSLINQFKKQLPNFLRWESETHREVLTNGYVKDLFGRKRR 62

Query: 869 YD----------EINSPKSSIR-NINERAAINAPIQGSAADITRRAMISV---------- 907
           +              +  S  R    +R + N  IQG++A   ++AM+++          
Sbjct: 63  FKETILKATSSSTFKNKNSDWRLEKIKRQSCNFKIQGTSATQVKKAMVNLFYPTRPDGTK 122

Query: 908 ----HKSLED------HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
                + L++       +    ++LQIHDEL+F+VP++      + I + M  A +P  +
Sbjct: 123 CLDRDEWLQENYKSILEEHDIHIVLQIHDELIFDVPQDVSQDVLKKISNIMLNA-IPSTH 181

Query: 958 LRVPLKVNIKVSNNWQ 973
           L V    +I  S  W 
Sbjct: 182 LGVTFHSDIHTSPYWG 197


>gi|229472369|gb|ACQ72699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 32/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P            F + P+  ++ AD + IELR+LAH          ++     
Sbjct: 1   PNLAQVPSDDQFR----ELFQASPSMVMVGADLAGIELRMLAHY------LARYDEGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF--RLATQLRIPRSEA----ADY 831
             ++  +I   N +K+    RR  KT+ ++ +YG       L+   ++   +A     + 
Sbjct: 51  DILLNGDIHQENADKIGI-SRRQVKTVTYAFLYGAGDNKIGLSYDPQLSSKQATAKGEEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y    PG+ + +   K+  + +G +  I GR I               +   A+N  
Sbjct: 110 RAAYMDAVPGLEKLVTAVKHKAQSSGKIRAIDGRSISC------------SSPHKALNML 157

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q SA  I +R M  V+++L      T  L  IHDE
Sbjct: 158 LQSSAGVIAKRWMQIVNENL---PPFTHQLAFIHDE 190


>gi|229472545|gb|ACQ72787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  ++  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDVHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342229|gb|ACY54625.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 30/214 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           +QG++A + +R M+    +L+   L    L  IH
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIH 190


>gi|47934710|gb|AAT39793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 27/215 (12%)

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLSS 625
             G ++D +   ++  ++   + ++E              I + +G++       FN  S
Sbjct: 2   RNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPGS 61

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +    
Sbjct: 62  RKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDSIDLPEAKAVARYMMLQK-RVAQI 116

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKK 744
           DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      +
Sbjct: 117 DSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGNR 175

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           L+  D S +ELR+LAH            N  DIH 
Sbjct: 176 LVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|297538972|ref|YP_003674741.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
 gi|297258319|gb|ADI30164.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
          Length = 515

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 169/404 (41%), Gaps = 38/404 (9%)

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           S+++   W  +      +     Y  ++ P+ ++++++ + GI+ D  +L++    I  +
Sbjct: 130 SHMLFSCWENMTVLAKSKGEWDRYIEVELPVFNLMTKVAVRGIKTDNKILREHKKNIDDD 189

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
                +      G  F +     + ++L   L       T+     +    LE +   DN
Sbjct: 190 FFRELKKFAIEYGLFFEVP----IANVLHDILSDRGYDLTE----MSVDFVLEFLPMVDN 241

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
              + ++  ++L K +   A+     I     RV       ST+T R+    P +QN+  
Sbjct: 242 -FGERVIALQKLQKSRVALAN-----ITLSKTRVCPIAETHSTVTSRMYYKNPTVQNLAK 295

Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785
           +       R  FI+   + L   DY Q E+ I+A ++K   L +++ N+ DI++  + EI
Sbjct: 296 R------YRDIFIADNDRTLSYVDYDQFEIGIMAALSKDKKLEEIYSNT-DIYKKFSLEI 348

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           FG          R  +K +  +  YG++   L   ++       +  + +F +F    E+
Sbjct: 349 FG------DEGKRSISKKLFLAFTYGMTHVNLLEAVKQH-GGDKEVARLFFDQFAVFIEW 401

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
               +    +NG + T+FG  +    +       +    R+ ++  +QG+ + I ++A++
Sbjct: 402 RVGIEKLFLENGRISTLFGNNLERTGVGELSFKEK----RSCVSHVVQGTGSLIFKKALL 457

Query: 906 SVHKSLEDHKLATKMLLQIHDELVF-EVPEEEITTASQIIVHSM 948
            + K         ++L+ +HD ++   +P  +I+    +   +M
Sbjct: 458 ELSK-----DSEIEILIPMHDAVLVQHLPAYDISKIIIVFESTM 496


>gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
 gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
          Length = 763

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 90/527 (17%), Positives = 168/527 (31%), Gaps = 96/527 (18%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           ++          T +          +      +   T   + T  ID     + D T   
Sbjct: 1   MKDFERLFLDTETFSG----VDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESP 56

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMR--GFEDIMLMSYVLDSGR 500
           T+ +E+   L++    +  + + + + +D+LV+  ++GI +     ED M+M++      
Sbjct: 57  TMPRELRKALRRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAF------ 110

Query: 501 SSHDIA---SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             H +     +  + L     E  K +     I +      + + I       +      
Sbjct: 111 -RHALPGSLDMQCQVLGVD-AEHAKDKAGKALIKRFCKPTPKTYKIRR--YTRETHPEEW 166

Query: 558 PK------LIVEKLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            K      L +  +  VY R+        +  ++ +   +   G  +D DL +     + 
Sbjct: 167 AKFLRYAALDIIAMREVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQ 226

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            +   L+E  ++  G K   +      D L   L+  + A T     K+T  DL +    
Sbjct: 227 AHKEELKEEAWERFGGKLTGN------DFL-PALRDLAPAFTIHNAQKSTLNDLLEDPDF 279

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +     I      S   ST  + L N ++   +R        +  T R A      QN+
Sbjct: 280 PDEGKVLIEMRLGASSTASTKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNL 339

Query: 724 PIKTDLGQKI------------------------------------------------RR 735
             + +                                                     R 
Sbjct: 340 -ARGEYSDDHEGKIKRREGESDVAFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRG 398

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-- 793
             I    KK + ADYS +E R LA IA       VF+   DI+   A ++FG++ E +  
Sbjct: 399 CIIPAKGKKFVVADYSNVEGRGLAWIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKA 458

Query: 794 -SPQMRRHAKTINFSIIYGISPFR---LATQLRIPRSEAADYIKRYF 836
               +R+  K     + YG         A  L +     A+ +K  F
Sbjct: 459 NRKDLRQIGKACELGLGYGGGVAAFLQFAKNLGLDLYAMAEVMKGTF 505



 Score = 45.0 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
           +PGI   +    +     G   T    +   +   + +   +           +Q    D
Sbjct: 639 YPGIALSVTTEIDE--DTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRD 696

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
           I   +M  V  +        +++L +HDEL+ EVP+ +    ++ +   M    LP    
Sbjct: 697 ILAWSMPGVEAA------GYEIVLSVHDELITEVPDTD-DYTTEELCALM--CDLPVWAK 747

Query: 959 RVPLKVNIKV 968
             PL     +
Sbjct: 748 GFPLAAEGDI 757


>gi|262342235|gb|ACY54628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + +ELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGVELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|229472205|gb|ACQ72617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  GILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|228969100|ref|ZP_04130014.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|229073434|ref|ZP_04206570.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228709741|gb|EEL61779.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228790589|gb|EEM38276.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 235

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 32/196 (16%)

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YGI+   L+ QL I ++ A   I ++  + P    +  +T   V  NGYV+ +FGR+  
Sbjct: 3   LYGITEIGLSDQLNITKAAATSLINQFKKQLPNFLRWESETHREVLTNGYVKDLFGRKRR 62

Query: 869 YD----------EINSPKSSIR-NINERAAINAPIQGSAADITRRAMISV---------- 907
           +              +  S  R    +R + N  IQG++A   ++AM+++          
Sbjct: 63  FKETILKATSSSTFKNKNSDWRLEKIKRQSCNFKIQGTSATQVKKAMVNLFYPTRPDGTK 122

Query: 908 ----HKSLED------HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
                + L++       +    ++LQIHDEL+F+VP++      + I + M  A +P  +
Sbjct: 123 CLDRDEWLQENYKSILEEHDIHIVLQIHDELIFDVPQDVSQDVLKEISNIMLNA-IPSTH 181

Query: 958 LRVPLKVNIKVSNNWQ 973
           L V    +I  S  W 
Sbjct: 182 LGVTFHSDIHTSPYWG 197


>gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45
 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1]
          Length = 993

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 156/442 (35%), Gaps = 90/442 (20%)

Query: 451 SYLKKFFENEHFLKIGHN-IKYDKLVLHRY---GISMRGFEDIML--MSYVL-------- 496
           + LK + ++   L + HN   +D ++L R     + +    D ++  +++ L        
Sbjct: 55  ADLKAYLDDSEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLC 114

Query: 497 -----DSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
                +S +    +  ++         K     R +++   +    + +++A  +   + 
Sbjct: 115 DIFNVNSDKAKDKEGKALISLLCKPRPKNSKIQRATALTHAE-EWQRFKDYAGSDILAMR 173

Query: 551 QLWLLL---RPKLIVEKLLHVYERLDKPMIDV---VSQMEITGIQIDQDLLKQVSAEISK 604
           +++  L      +   +L  + +++++  + +   +++  +T ++ +Q  L  V+ +++ 
Sbjct: 174 EIYQHLPNWNMNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTD 233

Query: 605 NLLSLEENIYDLSGE---KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           N +        L       F ++ P      L  ++  P                     
Sbjct: 234 NAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIP------------------ 275

Query: 662 CGDNPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
               P ++ +L  R Q     ++   +L   ++   +   T     ++ TGR A      
Sbjct: 276 ----PALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQP 331

Query: 721 QNIPIKTDLGQKI---------------------------RRAFISPPTKKLISADYSQI 753
            N+P  T     I                           R   I+PP KKL+ +D S I
Sbjct: 332 DNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNI 391

Query: 754 ELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
           E R+LA +A        F         D++++  A  F +  E V+ + R+  K +   +
Sbjct: 392 EGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGL 451

Query: 809 IYGISP-----FRLATQLRIPR 825
            YG        F LA  L +  
Sbjct: 452 GYGGGVAAFLTFALAYGLDLDE 473



 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                  Q +A D+    M  + K+        +++L +HDE++ E P+
Sbjct: 913 HNCENICQAAARDVLAYNMPPIEKA------GYEIVLTVHDEIISEAPD 955


>gi|229472397|gb|ACQ72713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEV 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|47934750|gb|AAT39813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E              I + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDSIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH      S +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNSAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 RLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934704|gb|AAT39790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934706|gb|AAT39791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934746|gb|AAT39811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E              I + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDSIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 RLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718]
 gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718]
          Length = 687

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 96/601 (15%), Positives = 186/601 (30%), Gaps = 137/601 (22%)

Query: 460 EHFLKIGHNIKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              L   HN  +D+ VL     R    +  + D M+ +    +      +  + +     
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQAL---AHGLPGSLGELCEVLGVP 120

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERL- 572
             K   K  K+ I +      +  +     S    + W        L +E +  VY+RL 
Sbjct: 121 QDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLP 180

Query: 573 -------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
                  +  +     Q+   G+ +D +L +     + +    L +   +++  +   ++
Sbjct: 181 KWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAAT 240

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            +   D L   +    G +    Q  T  + +   +   + + + +    Q S   ++  
Sbjct: 241 QR---DALIKHIVESYGVELPDMQRSTLERRIADPDLP-SAVKELLAIRLQASTTSTSKY 296

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI------------ 733
            +L   ++   +   T     ++ TGR A      QN+P  +   ++I            
Sbjct: 297 KALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCA 356

Query: 734 ---------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN----- 773
                          R   I+P  KKL+ +D S IE R+LA +A        F       
Sbjct: 357 DLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGT 416

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKT--------------INFSIIYGISPFRLAT 819
             D++++  A+ F +  + V   MR+  K               I F+++YG+    LA 
Sbjct: 417 GPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLAN 476

Query: 820 QL--RIPRS---EAADYIKR------------------------YFHRFPGIHEY---IE 847
                IPR    EA  +                           +    P   ++   +E
Sbjct: 477 AALPNIPRDVIREAKSWYDESVKRKSTYGLSERVFIACDSLKRLWRRAHPATCDFWYELE 536

Query: 848 KTKNFVRQN-------GYV---ETIFGRRIHYDEIN----------------------SP 875
            T              GY+         RI                            S 
Sbjct: 537 CTVRTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSR 596

Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
           K           +    Q +A D+    M  +  +         ++L +HDE++ E P+ 
Sbjct: 597 KWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDA------GYSIVLTVHDEVITESPDT 650

Query: 936 E 936
           E
Sbjct: 651 E 651


>gi|262212075|gb|ACY35654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212091|gb|ACY35662.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212181|gb|ACY35707.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342239|gb|ACY54630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQVMVGADLAGIELRMLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++               +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|262212209|gb|ACY35721.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 173

 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 26/193 (13%)

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           P + +++AD S IELR+L+H          +++      ++  +I  VN +K+    R+ 
Sbjct: 1   PGQVMVAADSSGIELRMLSHFPAK------YDDGRYADILLNGDIHQVNADKIGI-SRKL 53

Query: 801 AKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            KT+ ++ +YG    ++             + +  +  + Y     G+ + +        
Sbjct: 54  VKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGLDKLL-AAIKTAS 112

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
             G+++ I GR+I  D            +   A+N  +QG++A + +R M+   ++++D 
Sbjct: 113 GRGFIKAIDGRKIMVD------------SPHKALNYCLQGNSAILAKRWMVINQQNIKDL 160

Query: 915 KLATKMLLQIHDE 927
            L    L  IHDE
Sbjct: 161 NLCCPQLAFIHDE 173


>gi|262342151|gb|ACY54586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 90/214 (42%), Gaps = 30/214 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+  + +YG    ++      P      + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTNAFLYGAGDEKIGHSYDKPLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E       + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLE-VIKKASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
           +QG++A + +R  +    +L+   L    L  IH
Sbjct: 157 LQGNSAILAKRWTVINQNNLKLLNLCCSQLAFIH 190


>gi|330974698|gb|EGH74764.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 74

 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 8/78 (10%)

Query: 6  HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L LVDGSS++YRAF+A P L+      P  A+ G  NML  L    R++   S  AV+F
Sbjct: 5  PLVLVDGSSYLYRAFHALPPLATS----PTGAVKGVLNMLKSL----RRQYPDSPLAVVF 56

Query: 66 DYPAVTFRNEIYPDYKAN 83
          +    TFR+ +Y DYKAN
Sbjct: 57 NAKGGTFRDALYNDYKAN 74


>gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2]
 gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2]
          Length = 658

 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 83/523 (15%), Positives = 166/523 (31%), Gaps = 113/523 (21%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           ++  ++A+ +++V++ LW   +P    E+L   Y +LD        ++ + G  +D +  
Sbjct: 161 ARTYKYALLDTDVMVALWEATQPMPPKEQL---YWQLDL-------EINMRGFGVDVEAA 210

Query: 596 KQVSA--EISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL-FTKLKFPSGAKTKTGQWKT 652
           + ++   ++++ ++  E       G+    S  KQ+         +     +       T
Sbjct: 211 EGMAEMAQLAQAMIDFEVE-TATQGKILTTSVIKQIQSFAAGLGAELDEAGRESVKALLT 269

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
                E +      ++   L+  +  K        L  H+N R      ++   S  +  
Sbjct: 270 RDDVPEVLRD----VLTLRLDASRAPKKHDA---ILRAHVNGRMCHSTVYHGALSGRSTA 322

Query: 713 LASLEPNLQNIPI------------------KTDLGQKIRRAFISP-------------- 740
           +   +  L N+                    + D     R     P              
Sbjct: 323 MGCGDVQLLNVARPRPGRKVKDTITYLDAARRRDYDYLSRPEVGPPLAALADAQRHLFCA 382

Query: 741 --PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQM 797
             P   L+ AD S IE R    +A    +   +E  +D +++ AA IF +   + V+   
Sbjct: 383 TNPGCILVVADLSGIEARKGPWLANDEGMLVEYEQGIDGYKVEAATIFDLPDTDAVTSDQ 442

Query: 798 RRHAKTINFSIIYGISPFRL-----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
           R+  K    ++ +G     L     A  L +        +  Y    P +  +    +  
Sbjct: 443 RQIGKITRLALQFGGGDGALDNMAKAYGLELSEDLRRKIVWSYRESHPALSTWWASLEYA 502

Query: 853 VR--------------------QNGYVETIFGRRIHYDEINS------------------ 874
                                    +V      R+      +                  
Sbjct: 503 ALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPSGRAISYHNARLVLEPGASAPI 562

Query: 875 -----PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
                P   +  ++ +   N   QG A D+   AM+SV    +       ++  ++DE++
Sbjct: 563 AVYDKPNGVVETLDRKILSNNMTQGLARDLFWEAMLSVAPVEQ-------IVHHVYDEVI 615

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
            EVPEE      + +   + KA L    L  PL     VS  W
Sbjct: 616 LEVPEERAELRLKQLEARLSKAPLWAPGL--PLGAEGFVSPYW 656


>gi|262212093|gb|ACY35663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQVMVGADLAGIELRMLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++               +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAVLAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342149|gb|ACY54585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +    D        FI+ PT KL+ +D + IELR+ AH          ++     
Sbjct: 1   PNLAQVSSDKDCR----ELFITNPTWKLVDSDLAGIELRLFAHY------LARYDGGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ------LRIPRSEAADY 831
             ++  +I  VN EK+    RR  KTI +  +YG    +L         L   + + A+ 
Sbjct: 51  KILLEQDIHQVNAEKIGI-SRRQVKTITYCFLYGGGDQKLGLSFDNMLPLDKAKKKGAEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y    PG+ + ++ T+    + G +  I  R+I  D             E  A+N  
Sbjct: 110 RRAYMDAIPGLEDLVKDTRRVA-ERGSIRAIDKRQIIVD------------KEHKALNCL 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QGSAA + +R ++   + L       +    IHDE
Sbjct: 157 LQGSAAVVAKRWLLLTDQDLRMSMFNHERYAFIHDE 192


>gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2]
 gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2]
 gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 993

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 141/432 (32%), Gaps = 70/432 (16%)

Query: 451 SYLKKFFENEHFLKIGHN-IKYDKLVLHRY---GISMRGFEDIML--MSYVLDSGRSSHD 504
           + LK +F++   L + HN   +D ++L R     + +    D ++  +++ L  G     
Sbjct: 55  ADLKAYFDDSEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGL-PGA---- 109

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPI--------DKISDSQVQEHAIENSNV-ILQLWLL 555
           +  +   +   + K   K  K+ I +         KI  +    HA E           +
Sbjct: 110 LGLLCDIFNVNSDKAKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDI 169

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVV-SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           L  + I + L +    +D+  +  +  ++   G+ +D +L K     +      L     
Sbjct: 170 LAMREIYQHLPNWNMNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQ 229

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
            L+           + +           A               Q    D  I  ++ E 
Sbjct: 230 QLTD--------NAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLREL 281

Query: 675 RQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
             +     T       +L   ++   +   T     ++ TGR A       N+P  T   
Sbjct: 282 LSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDP 341

Query: 731 QKI---------------------------RRAFISPPTKKLISADYSQIELRILAHIAK 763
             I                           R   I+PP KKL+ +D S IE R+LA +A 
Sbjct: 342 NTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAG 401

Query: 764 ITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP---- 814
                + F         D++++  A  F +  E V+   R+  K +   + YG       
Sbjct: 402 ENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFL 461

Query: 815 -FRLATQLRIPR 825
            F LA  L +  
Sbjct: 462 TFALAYGLDLDE 473



 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                  Q +A D+    M  + K+        +++L +HDE++ E P+
Sbjct: 913 HNCENICQAAARDVLAYNMPPIEKA------GYEIVLTVHDEIISEAPD 955


>gi|47934742|gb|AAT39809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E              I + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDSIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    +     RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAVRDDG-RVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDGGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 RLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|262342195|gb|ACY54608.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGADDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + G +I  D            +   A++  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGGKIIVD------------SPHKALSYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262212347|gb|ACY35790.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 37/204 (18%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN---SLDIHRMVAAEIFGVN 789
            RR F++ P +  + AD S IELR+L+H       Y  F +   + DIH++ A +I    
Sbjct: 12  YRRLFMATPGQVTVGADLSGIELRMLSHYLARYDTY--FGDNLLNGDIHQLNADKI---- 65

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR--IPRSEAA----DYIKRYFHRFPGIH 843
                   R+  KT+ ++ +YG    ++       +   +A     +  + +    PG+ 
Sbjct: 66  -----GTARKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKAKAKGREIKEAFIEAIPGLS 120

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           + +   K+     G+V+ I GR+I  D            +   A+N  +QGSA  + +R 
Sbjct: 121 DLLSAVKS-AANRGFVKGIDGRKILVD------------SPHKALNYLLQGSAGVVAKRW 167

Query: 904 MISVHKSLEDHKLATKMLLQIHDE 927
           M+  +    D+      L  +HDE
Sbjct: 168 MVIAN----DNPFCCSQLAFVHDE 187


>gi|121606814|ref|YP_984143.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595783|gb|ABM39222.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 530

 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 155/392 (39%), Gaps = 49/392 (12%)

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
           + +I   WL L         L     ++ P+ +++ +    GI+I+Q+ L++   +I   
Sbjct: 140 AKIIQVRWLELEKLAESLGELQRQNEVEIPIFNILHKNITPGIRINQENLREHKKDIEYE 199

Query: 606 LLSLEENI---YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
                ++    YDL  E  N    + + D L  +                +   + Q   
Sbjct: 200 YYKTLKDFSNKYDLPLEDPN---DQTVIDYLEYR---------DFDFSGISVDYMLQFVP 247

Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
             +   + ++  R++S  +      L + +    +       L  ++T R+   +P  QN
Sbjct: 248 TPDGFAEAVINLRKISASR-----HLLSALTLSKKYSTPVIDLFGSITSRIYFKDPVFQN 302

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782
           I  +       R       +  L   DY Q E+ ++A +++   L  ++ +  D++  + 
Sbjct: 303 ISKR------HRDVICPNGSNLLSYVDYDQFEVGVMAALSEDEILLSLY-SGEDLYESLL 355

Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842
            ++FG          R+ AK +  S  YG+   R++      +      +K +F +    
Sbjct: 356 EQLFGE------KNQRKFAKRLFLSYAYGMKLNRIS-DAAHAKGVERGKVKEFFRKLTTF 408

Query: 843 HEYIEKTKNFVRQNGYVETI---FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
            ++    +    +NG + T    F RR    +++  +        R+ I+  +QG+A+ I
Sbjct: 409 EKWKADLQEQFHKNGCISTSEGNFLRRNVTGQLSEKEK-------RSCISQVVQGTASLI 461

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            ++A++++ K         ++L+ +HD ++ E
Sbjct: 462 FKKALLALDKI-----DGFRILVPMHDAVLVE 488


>gi|262212059|gb|ACY35646.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212071|gb|ACY35652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212081|gb|ACY35657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212101|gb|ACY35667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212145|gb|ACY35689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQVMVGADLAGIELRMLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++               +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342127|gb|ACY54574.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 33/202 (16%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAH-IAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
            RR F++ P   ++ AD S IELR+L+H +A+          + DIH++ A +I      
Sbjct: 12  YRRLFMATPGLVMVGADVSGIELRMLSHYLARYNTYLGDNLLNGDIHQLNADKI------ 65

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLR--IPRSEAA----DYIKRYFHRFPGIHEY 845
                 R+  KT+ ++ +YG    ++       +   +A     +  + +    PG+ + 
Sbjct: 66  ---GITRKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKAKAKGREIKEAFIEAIPGLSDL 122

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
           +   K+     G+V+ I GR+I  D            +   A+N  +QGSA  + +R M+
Sbjct: 123 LSAVKS-AANRGFVKGIDGRKILVD------------SPHKALNYLLQGSAGVVAKRWMV 169

Query: 906 SVHKSLEDHKLATKMLLQIHDE 927
             +    D+      L  IHDE
Sbjct: 170 IAN----DNPFCCSQLAFIHDE 187


>gi|47934786|gb|AAT39831.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E              I + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDGIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 SLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43]
 gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43]
          Length = 656

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 77/528 (14%), Positives = 169/528 (32%), Gaps = 118/528 (22%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           S+  ++A+ +++ ++ +W    P    E+    Y  +D        ++   GI +D +  
Sbjct: 159 SRTYKYALIDTDAMVGVWESTVPLPPREQA---YFEMDM-------RINARGIGVDVEAA 208

Query: 596 KQVSA-EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654
           + +   +         E  Y   G    ++   ++ +   T L        +    K  A
Sbjct: 209 QAMEDLKAFAEAQLDYEMAYLTDGGILAVTEVAKIKEYAAT-LGEDMDDAGRETLKKIAA 267

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714
           +D    +     +I+  L+  +  K  +     L  H+     R+         ++GR  
Sbjct: 268 RDNLPDSLRQ--LIELRLDASRAPKKSAA---ILRAHVGG---RLQHHTIYHGALSGRST 319

Query: 715 SLEPNLQNI--------PIKTDLGQKIRRAFI---------------------------- 738
           +                  KT   + I  A +                            
Sbjct: 320 ARGAGGAQTLNTARPRPGKKTADCEAILDACLRGDRAYLSSPEVGPILAALADAQRQLFR 379

Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797
            + P   L+ AD S IE R+   +A   P  + FE  +D +++ A +I+ +  + V+   
Sbjct: 380 ATKPGHVLVGADLSGIEARMAPWLANDVPKLEAFEKGIDGYKLAAMDIYSIEYDAVTKDQ 439

Query: 798 RRHAKTINFSIIYGISPFRLATQ-----LRIPRSEAADYIKRYFHRFPGIHEYIEKT--- 849
           R+  K  + ++ +G +    A+      + +P  + ++ +  +    P    +       
Sbjct: 440 RQVGKAADLALGFGGADGAFASMAANYGVHLPPEQVSEIVYNWRAGRPAFERWWSLCEYS 499

Query: 850 -----------------KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892
                            +N   Q  +V+     R+H     +       ++     N PI
Sbjct: 500 ALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEPGANVPI 559

Query: 893 -----------------------QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929
                                  QG + D+    ++ V +         +++  I+DE +
Sbjct: 560 AIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRV-------EEIVHHIYDEAL 612

Query: 930 FEVPEEEITTASQIIVHSM--EKACLPKINLRVPLKVNIKVSNNWQEE 975
            EV  E      + +V  M   +A  P +    PL         W+++
Sbjct: 613 LEVLAELAALREKQLVERMCRGEAWCPGL----PLGAEGWHGLRWRKD 656


>gi|262342115|gb|ACY54568.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 31/201 (15%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
            RR F++ P + ++ AD S IELR+L+H       Y  F ++     ++  ++  +N +K
Sbjct: 12  YRRLFMATPGQVMVGADLSGIELRMLSHYLARYDTY--FGDN-----LLNGDVHQLNTDK 64

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLR--IPRSEAA----DYIKRYFHRFPGIHEYI 846
           +    R+  KT+ ++ +YG    ++       +   +A     +  + +    PG+ + +
Sbjct: 65  IGI-TRKLVKTVTYAFLYGAGNEKIGYSYDRLLSSQKAKAKGREIKEAFIEAIPGLSDLL 123

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
              K+     G+V+ I GR+I  D            +   A+N  +QGSA  + +R M+ 
Sbjct: 124 SAVKS-AANRGFVKGIDGRKILVD------------SPHKALNYLLQGSAGVVAKRWMVI 170

Query: 907 VHKSLEDHKLATKMLLQIHDE 927
            +    D+      L  IHDE
Sbjct: 171 AN----DNPFCCSQLAFIHDE 187


>gi|229472347|gb|ACQ72688.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNRRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 28/217 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGEK-------FNLS 624
           E  G  +DQ L   + A+  + +  +E ++  L            +G++       FN+ 
Sbjct: 1   ERNGWLLDQRLCHILCAKFKERMNEIESDLQALFPPIVEERYSEKTGKRLKDKVTVFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLSKIKST 683
           S +Q+ + L  K        T TG+     +    +    + P    +LE+  L K +  
Sbjct: 61  SRQQVAERLSAK-GAVWTELTPTGKPMVDEK---TLKENSHVPEAAQVLEYLLLQK-RYA 115

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPT 742
             +S   H+     RVH   +    +TGR+    PN+  +P + ++ G+  R  +I P  
Sbjct: 116 QVNSWLEHVQDDG-RVHGRVTTNGAVTGRMTHQNPNMAQVPSVNSEYGEDCRNCWIVPEG 174

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           +KL+  D S +ELR+LAH         V     DIH 
Sbjct: 175 RKLVGVDASGLELRMLAHYMGDEEFTNVLLRG-DIHT 210


>gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
 gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
          Length = 687

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 98/603 (16%), Positives = 189/603 (31%), Gaps = 141/603 (23%)

Query: 460 EHFLKIGHNIKYDKLVLH----RYGISMRGFEDIML--MSYVLDSGRSSHDIASIAQKWL 513
              L   HN  +D+ VL     R    +  + D M+  +++ L  G     +  + +   
Sbjct: 64  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGL-PGA----LGELCEVLG 118

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYER 571
               K   K  K+ I +      +  +     S    + W        L +E +  VY+R
Sbjct: 119 VPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKR 178

Query: 572 L--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           L        +  +     Q+   G+ +D +L +     + +    L +   +++  +   
Sbjct: 179 LPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQA 238

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           ++ +   D L   +    G +    Q  T  + +   +   + + + +    Q S   ++
Sbjct: 239 ATQR---DALIKHIVESYGVELPDMQRSTLERRIADPDLP-SAVKELLAIRLQASTTSTS 294

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI---------- 733
              +L   ++   +   T     ++ TGR A      QN+P  +   ++I          
Sbjct: 295 KYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAG 354

Query: 734 -----------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--- 773
                            R   I+P  KKL+ +D S IE R+LA +A        F     
Sbjct: 355 CADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDA 414

Query: 774 --SLDIHRMVAAEIFGVNIEKVSPQMRRHAKT--------------INFSIIYGISPFRL 817
               D++++  A+ F +  + V   MR+  K               I F+++YG+    L
Sbjct: 415 GTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGL 474

Query: 818 ATQL--RIPRS---EAADYIKR------------------------YFHRFPGIHEY--- 845
           A      IPR    EA  +                           +    P   ++   
Sbjct: 475 ANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVFIACDSLKRLWRRAHPATCDFWYE 534

Query: 846 IEKTKNFVRQN-------GYV---ETIFGRRIHYDEIN---------------------- 873
           +E T              GY+         RI                            
Sbjct: 535 LECTVRTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSY 594

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S K           +    Q +A D+    M  +  +         ++L +HDE++ E P
Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDA------GYSIVLTVHDEVITESP 648

Query: 934 EEE 936
           + E
Sbjct: 649 DTE 651


>gi|262342183|gb|ACY54602.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +         +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSSFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                 RAA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNRAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262212395|gb|ACY35814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 37/204 (18%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN---SLDIHRMVAAEIFGVN 789
            RR F++ P + ++ AD S IELR+L+H       Y  F +   + DIH++ A +I    
Sbjct: 6   YRRLFMATPGQVMVGADLSGIELRMLSHYLARYDTY--FGDNLLNGDIHQLNADKI---- 59

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIH 843
                  +R+  KT+ ++ +YG    ++             +++  +  + +    PG+ 
Sbjct: 60  -----GIIRKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKVKAKGREIKEAFIEAIPGLS 114

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           + +          G+V+ I GR+I  D            +   A+N  +QGSA  + +R 
Sbjct: 115 DLL-SAVKCAANRGFVKGIDGRKILVD------------SPHKALNYILQGSAGVVVKRW 161

Query: 904 MISVHKSLEDHKLATKMLLQIHDE 927
           M+  +    D+      L  IHDE
Sbjct: 162 MVIAN----DNPFCCSQLAFIHDE 181


>gi|47934720|gb|AAT39798.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 98.2 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D    +++  +++  + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLTFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +   D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKV---LEGIDRPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 VLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|262212327|gb|ACY35780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 98.2 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ +  R I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDDRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIGYYPLAFVHDE 191


>gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1]
          Length = 698

 Score = 98.2 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 76/490 (15%), Positives = 155/490 (31%), Gaps = 73/490 (14%)

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHN-IKYDKLVLHR- 478
                 F D  V     + G + +  ++   L++  + N     + HN   +D+L++   
Sbjct: 5   CHTAYAFDDEPVQVWDCTNGSD-MPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHC 63

Query: 479 --YGISMRGFEDIMLMSYVLDSGRSSH----DIASIAQKWLSYTRKEILKSRKSSIPIDK 532
             + I +    D M+ ++        H     + ++ +  L  +  +  K ++    I +
Sbjct: 64  WGFDIPVSNTIDTMIWAF-------RHALPGSLDALCEV-LGVS-ADNAKDKRGKALIQR 114

Query: 533 ISDSQVQEHAIEN--SNVILQLWLLLRPKLIVE--KLLHVYERL--------DKPMIDVV 580
            S    + + I    +      W L     + +   +  V+ +L        +  ++++ 
Sbjct: 115 FSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELD 174

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
             +   G ++D  L +     + K+   L+E      G           G      L+  
Sbjct: 175 QLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYGGSLT-------GKDFLPILREL 227

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           + A       K+T  DL   +   +     I      +   ST  + L    +   +R  
Sbjct: 228 APAHRIHNAQKSTLNDLLADDDLPDDASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRG 287

Query: 701 TFYSLASTMTGRLASLEPNLQNIPI----KTDLGQKI----------------------R 734
                 +  T R A      QN+        +L + I                      R
Sbjct: 288 CIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVR 347

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
              I     K + ADYS +E R LA +A        F   LDI+ + A ++FG+  + + 
Sbjct: 348 SCIIPETGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIK 407

Query: 795 PQ---MRRHAKTINFSIIYGISPFR---LATQLRIPRSEAADYIKRYFHRF---PGIHEY 845
            +   +R+  K     + Y          A  L +   + A  +   F           Y
Sbjct: 408 KERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGY 467

Query: 846 IEKTKNFVRQ 855
                   ++
Sbjct: 468 EWARIQEAKR 477



 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           ++G V T    +   +   + +   +       +    Q    D+   A+++V  +    
Sbjct: 588 EDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEAN---- 643

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
                ++L +HDE++ E P+      ++ +   M    LP+     PL   
Sbjct: 644 --GYPIVLHVHDEIICETPDLPEYNVAE-LERLM--CELPEWAEGFPLVAE 689


>gi|229472307|gb|ACQ72668.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 30/215 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           +QG++A + +R M+    +L+   L    L  IHD
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHD 191


>gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 591

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 83/583 (14%), Positives = 175/583 (30%), Gaps = 87/583 (14%)

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
           IT+   A+      +  +     +  S    T    +                     L+
Sbjct: 17  ITNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPG------------------RLQ 58

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGI-----SMRGFEDIML--MSYVLDSGRSSHDIAS 507
           K   +   L   HN  +D+ VL R+ I      +  + D M+  +++ L  G     + +
Sbjct: 59  KAIADPDTLLYFHNSHFDRTVL-RHAIPRLAPDVTRWRDTMVQALAHGL-PGA----LGA 112

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKL 565
           + +       K   K  K+ I +      +  +     S    + W        L +E +
Sbjct: 113 LCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAM 172

Query: 566 LHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
             V++RL        +  +     Q+   G+ +D  L +     + +    L +    ++
Sbjct: 173 REVHKRLPKWNYKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMT 232

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677
             +   ++ +   D L   +    G +    Q  T  + +   +   + + + +    Q 
Sbjct: 233 DGEVQAATQR---DALIKHIVESYGVELPDMQRSTLERRMADPDLP-SAVKELLAIRLQA 288

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI---- 733
           S   ++   SL   ++   +   T     ++ TGR A      QN+P  +    +I    
Sbjct: 289 STTSTSKYKSLMKGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGI 348

Query: 734 -----------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770
                                  R   ++P  KKL+ +D S IE R LA +A        
Sbjct: 349 EALKAGCADLLFDNIMELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHA 408

Query: 771 FEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQ 820
           F         D++++  A  F ++ + V    R+  K +   + +G        F L   
Sbjct: 409 FREYDEGTGPDLYKLAYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYG 468

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880
           L +     A               + +++       G        R+     +  +   R
Sbjct: 469 LDLDELANAALPNIPRDVIREAKNWYDESVKRKATYG-----LSERVFIACDSLKRLWRR 523

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
                      ++ +               L +      M   
Sbjct: 524 AHPATCDFWYELERTVRAAIATPTKDAVLRLSESPPRWCMAAH 566


>gi|47934724|gb|AAT39800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 81/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D    +Q+  ++   + S+E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDVPYAEQLMMDLMFEMNSIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +   D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKV---LEGIDRPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 VLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934738|gb|AAT39807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E              I + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDGIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
             S    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IGSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 SLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934748|gb|AAT39812.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934754|gb|AAT39815.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934758|gb|AAT39817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934760|gb|AAT39818.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934800|gb|AAT39838.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDGIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 SLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934730|gb|AAT39803.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934732|gb|AAT39804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934734|gb|AAT39805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 28/217 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENI-------------YDLSG-------EKFNL 623
           E  G +++Q    Q+ + +   L S++  +             +  SG       E FN 
Sbjct: 1   ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            S +Q+ + L  K  +    +T+ G      +    +   D P  K + E+  L K +  
Sbjct: 61  GSRQQIAERLIEK-GWKPTKRTEKGSVIVDEEV---LASLDYPEAKALAEYMMLQK-RIA 115

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPT 742
             DS    + K   RVH        +TGR+  + PN+  +P   +  G + R  +     
Sbjct: 116 QIDSWLEAVGKDG-RVHGRVITNGAVTGRMTHMSPNMAQVPNSGSPYGHECRDLWTVEKG 174

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            KL+  D + +ELR+LAH            +  DIH 
Sbjct: 175 YKLVGIDAAGLELRMLAHYMNDNVYTHEVVSG-DIHT 210


>gi|47934762|gb|AAT39819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDGIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 SLVGIDASGLELRMLAHYMDDGDYTNEILNG-DIHT 209


>gi|258622057|ref|ZP_05717084.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258585671|gb|EEW10393.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 353

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 121/345 (35%), Gaps = 35/345 (10%)

Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ-----LSKIKST 683
           +  +       P    T   ++       E I      + + IL+  +        I   
Sbjct: 26  VQRVKQLGCDVPEARVTLFNRYHRHLSRRENIRLDMEVLERKILKHSKKKSTRSQAISKQ 85

Query: 684 YADSLPNHI-NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
           Y     + I +          S   T+TGR   L  +L  +   +            P  
Sbjct: 86  YQRFRASLIRDNNGFWHRPEVSPFHTITGRDQVLGHSLVQLSKNS-----WSDILSPPTG 140

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
                 DY Q E  I A ++    L  ++E   D++  +AA+I            R   K
Sbjct: 141 SVYALLDYEQQEPMIAASLSGCQSLMGMYERG-DVYTQLAADITN------DEASRDVFK 193

Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862
            +  S I G      A +L +P +    ++     +   I  Y+       ++ G ++++
Sbjct: 194 ELLLSHINGTGVISAAEKLNLPEAVVRRWLIELKRKLQPIDSYLTHQVFLAQRRGLLQSL 253

Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922
             R     + N    SIR        N P+Q + ADI RRA  ++ ++         +LL
Sbjct: 254 DWRHFISPDQN--NKSIR--------NWPLQATGADIMRRACFNLDEA------NIPLLL 297

Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN-LRVPLKVNI 966
             HD  +  + EE   +  ++ V +++ A    ++ L +  KV +
Sbjct: 298 TNHDSFLVRLDEENQDSQLELAVKALKNASTEVLHGLSLKTKVEM 342


>gi|262342137|gb|ACY54579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++++YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYALLYGAGDEKIGHSCDKLLSSKAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHEALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCGQLAFIHDE 192


>gi|161617952|ref|YP_001595432.1| DNA polymerase [Enterobacteria phage phiEcoM-GJ1]
 gi|150416371|gb|ABR68749.1| DNA polymerase [Enterobacteria phage phiEcoM-GJ1]
          Length = 644

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 108/672 (16%), Positives = 224/672 (33%), Gaps = 123/672 (18%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +  I T  +              L+Q    +         + V T +++  + T  K I 
Sbjct: 10  ASDIETTGL--------------LEQMRKQAAPRLHNIGYIDVLTREETVIEWTDRKSIQ 55

Query: 451 SYLKKFFENEHFLKIGHN-IKYDKLVLHRYGISMRGFE--DIMLMSYVLDSGRSSHDIAS 507
           ++L     +     I HN   +D   L   G  +      D + +S+ L   R  H +  
Sbjct: 56  AFL-----DTGPTLIMHNGATFDFEALRFLGYDVSKCTLIDTLFISWYLQPRRVKHGLEG 110

Query: 508 IAQKW-----------------LSYTRKEILK-----SRKSSIPIDKI-----SDSQVQE 540
             +++                  ++   E  K       +  I + KI        +  E
Sbjct: 111 YGEEFGVPKPVIEDWENQTQEEYNHRVMEDCKIQLKLWEQQYIQLLKIYKSPSEVKRFVE 170

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLD---KPMIDVV-SQMEITG---IQIDQD 593
           + +  +   +        KL +EK L    +L+   K   D + + M       I+    
Sbjct: 171 YLMTKARQQVIQQRTRW-KLNIEKALAFKAKLEPMIKEKTDALEASMPRIPEYVIKTRPA 229

Query: 594 LLKQVSAEISKNLLSLEE--------------NIYDLSG-EKFNLSSPKQLGDILFTKLK 638
              +++ ++S   +  +                I  L G ++ N  S  Q+ D LF+   
Sbjct: 230 KCHKMNGQLSATGIKWKAVCDANGLDWKDPDLAIKVLKGYKEPNAGSHVQIKDWLFSLGW 289

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDN-------PIIKNILEW-----------RQLSKI 680
            P   K    +     + + QI   D        P +  + E              + K 
Sbjct: 290 EPETFKFDRNKETGETRQIPQITVKDEDGNPEICPSLHKLAERNPESGIQHLIGMGVYKH 349

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS- 739
           + +  +     +++      T      T T RL   E  +    I+   G+++R    + 
Sbjct: 350 RLSVVNGFLRDVDED--GYLTARCGGLTNTLRLKHRE-LVNLPSIRVFGGEELRSMLEAW 406

Query: 740 PPTKKLISADYSQIELRILAHIAKITP---LYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796
               + + +D   +E R   H   +     + +      D H  +A  + G  I +   Q
Sbjct: 407 REDYEQLGSDLCSLEDRCKHHFQWMYDPEYVKKQLAPDYDAH--LAIGVIGGFITEQESQ 464

Query: 797 ----------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
                      R   KT N++  YG     +A      ++ AA   K Y+         +
Sbjct: 465 DHKDGIKKCKQRPMFKTTNYACQYGAGVPTVARSAGCDQTTAARLHKAYWD--------L 516

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
             +   +  N  V T+ G+    + +N    S+R   +R   +   QG+ A +      +
Sbjct: 517 NWSIKEIAANTKVITVDGQMWQQNPVNKFWYSLRTEKDR--FSTLCQGTGAYVFDIWCNN 574

Query: 907 VHKSLEDHKLATKMLL--QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
           +  ++ + +     LL  Q HDEL+ +V +      + ++  +M++    ++ L      
Sbjct: 575 II-AICNERWGCDPLLSGQFHDELILQVKKGFRDLWTDLLNEAMDR-TNKELKLNRDCAC 632

Query: 965 NIKVSNNWQEEN 976
           +++  +N+ E +
Sbjct: 633 DVQFGDNYAEIH 644


>gi|47934756|gb|AAT39816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEETGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDGIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 SLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|262212195|gb|ACY35714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQFMVGADLAGIELRVLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++               +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRELVKTVTYAFLYGAGDEKIGHSYDKLLPSKAAEKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G  + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGRDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG++A + +R M+    +L+   L    L  IHDE
Sbjct: 157 LQGNSAILAKRWMVINQNNLKLLNLCCSQLAFIHDE 192


>gi|262342177|gb|ACY54599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 11  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 69

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       RS A     +   +      G  +
Sbjct: 70  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASRSSASRKGQEIRGKIMQGLSGFAD 121

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 122 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 169

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 170 IRTHELLQEAGIDYYPLAFIHDE 192


>gi|262212275|gb|ACY35754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR LAH        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLAHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  + + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGRGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFVHDE 191


>gi|262212247|gb|ACY35740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212251|gb|ACY35742.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212253|gb|ACY35743.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212257|gb|ACY35745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212267|gb|ACY35750.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212303|gb|ACY35768.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342155|gb|ACY54588.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342159|gb|ACY54590.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342169|gb|ACY54595.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFVHDE 191


>gi|262212215|gb|ACY35724.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGINYYPLAFVHDE 191


>gi|262212259|gb|ACY35746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS--LDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E     DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDTSGLELRCLGHYLSRYDGGKFAEEGVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|47934722|gb|AAT39799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D    +++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +   D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKV---LEGIDRPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVPAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 VLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|262212315|gb|ACY35774.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNVAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFVHDE 191


>gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 579

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 141/432 (32%), Gaps = 70/432 (16%)

Query: 451 SYLKKFFENEHFLKIGHN-IKYDKLVLHRY---GISMRGFEDIML--MSYVLDSGRSSHD 504
           + LK +F++   L + HN   +D ++L R     + +    D ++  +++ L  G     
Sbjct: 55  ADLKAYFDDSEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGL-PGA---- 109

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPI--------DKISDSQVQEHAIENSNV-ILQLWLL 555
           +  +   +   + K   K  K+ I +         KI  +    HA E           +
Sbjct: 110 LGLLCDIFNVNSDKAKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDI 169

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVV-SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
           L  + I + L +    +D+  +  +  ++   G+ +D +L K     +      L     
Sbjct: 170 LAMREIYQHLPNWNMNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQ 229

Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
            L+           + +           A               Q    D  I  ++ E 
Sbjct: 230 QLTD--------NAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLREL 281

Query: 675 RQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
             +     T       +L   ++   +   T     ++ TGR A       N+P  T   
Sbjct: 282 LSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDP 341

Query: 731 QKI---------------------------RRAFISPPTKKLISADYSQIELRILAHIAK 763
             I                           R   I+PP KKL+ +D S IE R+LA +A 
Sbjct: 342 NTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAG 401

Query: 764 ITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP---- 814
                + F         D++++  A  F +  E V+   R+  K +   + YG       
Sbjct: 402 ENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFL 461

Query: 815 -FRLATQLRIPR 825
            F LA  L +  
Sbjct: 462 TFALAYGLDLDE 473


>gi|262342165|gb|ACY54593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 194

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 13  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 71

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 72  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 123

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 124 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 171

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 172 IRTHEQLQEAGIDYYPLAFIHDE 194


>gi|262342313|gb|ACY54667.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFVHDE 191


>gi|255601377|ref|XP_002537664.1| DNA polymerase I, putative [Ricinus communis]
 gi|223515546|gb|EEF24720.1| DNA polymerase I, putative [Ricinus communis]
          Length = 71

 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961
            AMI+V   LE + L T+M++Q+HDELV EVP++E+    + +   M+        L+VP
Sbjct: 1   MAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEVVREKLPELMKNVA----ELKVP 56

Query: 962 LKVNIKVSNNWQEEN 976
           L   + +  NW E +
Sbjct: 57  LLAEVGIGKNWDEAH 71


>gi|229472309|gb|ACQ72669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   R      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGRIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    +  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPMAFVHDE 191


>gi|47934716|gb|AAT39796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D    +++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +   D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKV---LEGIDRPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 VLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934736|gb|AAT39806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 97.0 bits (240), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDGIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGS 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 SLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|2996329|gb|AAC13209.1| DNA polymerase I [Yersinia pestis KIM 10]
          Length = 289

 Score = 97.0 bits (240), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 108/285 (37%), Gaps = 34/285 (11%)

Query: 33  LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR------PK 86
           + V A  GF   + +         +     +++D      R + YP+YKANR       K
Sbjct: 1   MEVQAAFGFVKNVRRYASILHARPM-----ILWD-GFSDKRRDFYPEYKANRDDDPDMKK 54

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG--FAVTIISTDKDL 144
           + E    Q P +     A G+  +  +  EADD+          +     + +++ D D 
Sbjct: 55  MKEGFAIQKPYILKMMTALGVNQLIAKDAEADDLAGMLVSRLAPQPTVDHIYLLTGDGDW 114

Query: 145 MQLVSPTTCLYDTV---KEEKIDIEHVIKKWGIPPEK-MVCLQALTGDSIDNIPGIPGIG 200
           +QLV             K ++++ E   +  G+P  +  +  +AL GD+ DNI G+ GIG
Sbjct: 115 LQLVRENVSWVSLREDAKHKQVNFEQFAELTGLPTPRAFLEAKALQGDTSDNIKGVGGIG 174

Query: 201 YKTAALLLQEYGNLENILINASR----IKQKKRRENILEYAETARL----SRKLVMLRTD 252
              A  LL E+G++  ++   +     I + + +    + A+ A       R L   + +
Sbjct: 175 DGGAKELLHEWGSVAAMVRGINDGSIVINKGRYKTAFNKLAKNAFNEKTGCRMLEAFKRN 234

Query: 253 VPITIPLE-HLILEDC-------NGPRLISFLKALEFTKLINRVA 289
           + +   ++      +        +          L F   +  + 
Sbjct: 235 MMLMNLIDTKFPPSEIESIKGARDMNAFEQMCCELNFRSFLEDLE 279


>gi|262212287|gb|ACY35760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 97.0 bits (240), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHEPLQEAGIDYYPLAFVHDE 191


>gi|262342189|gb|ACY54605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LDAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFVHDE 191


>gi|213584655|ref|ZP_03366481.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 122

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 20/135 (14%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
           HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4   HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIIHSQPTHAVA 47

Query: 64  IFDYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           +FD  A +  +R++  PDYKA RP +P+ L  ++P +R A +  G+      G EADD+ 
Sbjct: 48  VFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLA 107

Query: 122 ATYTYIAEKEGFAVT 136
           AT      + G   T
Sbjct: 108 ATLALKVTEAGHQAT 122


>gi|262342153|gb|ACY54587.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKVMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262212299|gb|ACY35766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMRGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262212297|gb|ACY35765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEVRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFVHDE 191


>gi|47934662|gb|AAT39769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D    +++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +   D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKV---LEGIDRPEAKAVAHYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVVTNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 VLVGIDASGLELRMLAHYMDDDDYTNEILNG-DIHT 209


>gi|47934714|gb|AAT39795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D    +++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +   D P  K +  +  L K ++  
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKV---LEGIDRPEAKAVARYMMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 VLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|262212239|gb|ACY35736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSNASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|47934606|gb|AAT39741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D    +++  ++   + ++E  +             + +G++       FN  
Sbjct: 2   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 61

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +   D P  K +  +  L K +   
Sbjct: 62  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKV---LEGIDRPEAKAVAHYMMLQK-RVAQ 116

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R  +      
Sbjct: 117 IDSWLKAV-KDDGRVHGRVVTNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTVDEGN 175

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 176 VLVGIDASGLELRMLAHYMDDDDYTNEILNG-DIHT 210


>gi|262212237|gb|ACY35735.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212241|gb|ACY35737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212279|gb|ACY35756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212285|gb|ACY35759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212291|gb|ACY35762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212295|gb|ACY35764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212313|gb|ACY35773.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212317|gb|ACY35775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212319|gb|ACY35776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212321|gb|ACY35777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212323|gb|ACY35778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212329|gb|ACY35781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212345|gb|ACY35789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212375|gb|ACY35804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212407|gb|ACY35820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342157|gb|ACY54589.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342173|gb|ACY54597.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342175|gb|ACY54598.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342187|gb|ACY54604.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342191|gb|ACY54606.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262212243|gb|ACY35738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 76/204 (37%), Gaps = 29/204 (14%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS---LDIHRMVAAEIFG 787
            + R  F        + +D S +ELR L H        + F       DIH  +A EI+G
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGK-FAEGVVNGDIHAALA-EIYG 67

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIH 843
            +        R+  K + + +IYG    +L       +S A     +   +      G  
Sbjct: 68  TD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFA 119

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           +     +   + +G ++ + GR I                  AA+N  +Q + A I +  
Sbjct: 120 DLNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLW 167

Query: 904 MISVHKSLEDHKLATKMLLQIHDE 927
           +I  H+ L++  +    L  IHDE
Sbjct: 168 VIRTHELLQEAGIDYYPLAFIHDE 191


>gi|262342181|gb|ACY54601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262212265|gb|ACY35749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262342163|gb|ACY54592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 194

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 13  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 71

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 72  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 123

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 124 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 171

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 172 IRTHELLQEAGIDYYPLAFIHDE 194


>gi|262212249|gb|ACY35741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +    ++G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERA-ESGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262342197|gb|ACY54609.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRHDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262342161|gb|ACY54591.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 76/206 (36%), Gaps = 27/206 (13%)

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEI 785
               + R  F        + +D S +ELR L H        +  E   + DIH  +A EI
Sbjct: 7   PFAHEYRSLFKPSGNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EI 65

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPG 841
           +G +        R+  K   + +IYG    +L       +S A     +   +      G
Sbjct: 66  YGTD--------RKSGKGATYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSG 117

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
             +     +   + +G ++ + GR I                  AA+N  +Q + A I +
Sbjct: 118 FADLNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICK 165

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDE 927
             +I  H+ L++  +    L  +HDE
Sbjct: 166 LWVIRTHELLQEAGIDYYPLAFVHDE 191


>gi|262212203|gb|ACY35718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 11  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 69

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 70  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 121

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 122 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 169

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 170 IRTHELLQEAGIDYYPLAFIHDE 192


>gi|262342179|gb|ACY54600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I      S           AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGALKGLDGRPIRLQ---SKN--------HAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262212393|gb|ACY35813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 37/204 (18%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN---SLDIHRMVAAEIFGVN 789
            RR F++ P + ++ AD S IELR+L+H       Y  F +   + DIH++ A +I    
Sbjct: 12  YRRLFMATPGQVMVGADLSGIELRMLSHYLARYDTY--FGDNLLNGDIHQLNADKI---- 65

Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLR--IPRSEAA----DYIKRYFHRFPGIH 843
                   R+  KT+ ++ + G    ++       +   +A     +  + +    PG+ 
Sbjct: 66  -----GITRKLVKTVTYAFLCGAGNEKIGYSYDRLLSPQKAKAKGREIKEAFIEAIPGLS 120

Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
           + +   K+     G+V+ I GR+I  D            +   A+N  +QGSA  + +R 
Sbjct: 121 DLLSAVKS-AANRGFVKGIDGRKILVD------------SPHKALNYLLQGSAGVVAKRW 167

Query: 904 MISVHKSLEDHKLATKMLLQIHDE 927
           M+  +    D+      L  IHDE
Sbjct: 168 MVIAN----DNPFCCSQLAFIHDE 187


>gi|47934752|gb|AAT39814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 82/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E              I + +  +       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTFRRLKDKVTTFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +N  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFTNKTEKGNIIVDEKA---LNSIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           KL+  D S +ELR+LAH            N  DIH 
Sbjct: 175 KLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|262212281|gb|ACY35757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +E R L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLEPRCLGHYLSRYDGSKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFVHDE 191


>gi|262212289|gb|ACY35761.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212305|gb|ACY35769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHEPLQEAGIDYYPLAFIHDE 191


>gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3]
 gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3]
 gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5]
 gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12]
          Length = 1032

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/467 (15%), Positives = 151/467 (32%), Gaps = 68/467 (14%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +        T +      K +  + +  +            F +  V     + G +   
Sbjct: 1   MNLLYLDTETFSEADL--KKVG-SYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPR 57

Query: 447 KEILSYLKKFFENEHFLKIGHN-IKYDKLVL-HRYGISM--RGFEDIMLMSYVLDSGRSS 502
               + LK    + +   +G N + +D+LV+ H +G  +      D M++++        
Sbjct: 58  DLRRAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAF-------R 110

Query: 503 H----DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN--SNVILQLWLLL 556
           H     +AS+ +         + K ++    I + S    + + I    +    + W   
Sbjct: 111 HALPGSLASLCEVL--NIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEF 168

Query: 557 --RPKLIVEKLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
               K  +  +  VY+++        +  ++ +   +   G ++D  L +     ++++ 
Sbjct: 169 IAYAKSDITSMREVYKKMPKWGNSEFEDRVLWLDQVINDRGFKVDVALAEAAIEAVTRHK 228

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             L+E      G           G      L+  + A       K+T  DL       + 
Sbjct: 229 EELQEEAQRKYGGSLT-------GKDFLPILQELAPAHRIHNAQKSTLNDLLADEDLPDD 281

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI- 725
               I      +   ST    L    +   +R        +  T R A      QN+   
Sbjct: 282 ARTIIEMRLGAASTASTKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARG 341

Query: 726 ---KTDLGQKI----------------------RRAFISPPTKKLISADYSQIELRILAH 760
                +L + I                      R   I    +K + ADYS +E R LA 
Sbjct: 342 YYHDDELDRGIAALLKGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAW 401

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ---MRRHAKTI 804
           +A        F   LDI+ + A ++FG++ + +  +   +R+  K  
Sbjct: 402 LAGEETALDTFRAGLDIYCVTAGKMFGMDPDDIKKERKDLRQIGKAC 448



 Score = 42.0 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 855  QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
            ++G + T    +   +   + + +    +   A    +Q    D+   AM++V       
Sbjct: 922  EDGRINTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAG---- 977

Query: 915  KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
                 ++L +HDELV E P+    T ++ +   M    LP      PL   
Sbjct: 978  --GYPIVLSVHDELVCETPDTPDYTVAE-LEKLM--CALPGWADGFPLVAE 1023


>gi|262342171|gb|ACY54596.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYTLAFVHDE 191


>gi|262342167|gb|ACY54594.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDTSGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262212283|gb|ACY35758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKPGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   +  G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAKP-GVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  HK L++  +    L  IHDE
Sbjct: 169 IRTHKLLQEAGIDYYPLAFIHDE 191


>gi|262212261|gb|ACY35747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        ++ E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKLAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNCLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262212341|gb|ACY35787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A      
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA------ 63

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
              ++    R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 64  ---EIYATDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G +E + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLEGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFVHDE 191


>gi|262212343|gb|ACY35788.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHEPLQEAGIDYYPLAFIHDE 191


>gi|262212339|gb|ACY35786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKITQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ +  R I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDDRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFVHDE 191


>gi|229472323|gb|ACQ72676.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRPLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    +  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPMAFIHDE 191


>gi|47934608|gb|AAT39742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D    +++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDVPYAEKLMMDVMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +   D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKV---LEGIDRPEAKAVAHYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVVTNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 VLVGIDASGLELRMLAHYMDDDDYTNEILNG-DIHT 209


>gi|213420856|ref|ZP_03353922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 72

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960
           +RAMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME        + V
Sbjct: 1   KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT----RIDV 56

Query: 961 PLKVNIKVSNNWQEEN 976
           PL V +    NW + +
Sbjct: 57  PLLVEVGSGENWDQAH 72


>gi|47934770|gb|AAT39823.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 28/216 (12%)

Query: 584 EITGIQIDQDL-----------LKQVSAEISKNLLSLEENIY-DLSGE-------KFNLS 624
           E  G  +D +            ++Q++ ++ K L  + E  + + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVLPPIVEERWSEKTGKRLKNKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LGGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           KLI  D S +ELR+LAH  +         +  DIH 
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|262212273|gb|ACY35753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKVMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L+   +    L  IHDE
Sbjct: 169 IRTHELLQGAGIDYYPLAFIHDE 191


>gi|262212211|gb|ACY35722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSGNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIIQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262212271|gb|ACY35752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L+   +    L  IHDE
Sbjct: 169 IRTHELLQGAGIDYYPLAFIHDE 191


>gi|47934630|gb|AAT39753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 239

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 89/247 (36%), Gaps = 28/247 (11%)

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
            ++N      ++  +  +L  +        L+  +    +Q    G   D      +  E
Sbjct: 1   CLQNCRANWXVYEHIVAELDRQGFSQQCRDLEHDVAKATAQQIANGFAFDFPTACNLYCE 60

Query: 602 ISKNLLSLEENIY------------DLSGEK-------FNLSSPKQLGDILFTKLKFPSG 642
             + +  +E  +             + +G++       FN++S +Q+ + L  K      
Sbjct: 61  HEQRMREIEAELQAIFPPIVEERWSEKTGKRLKDKVTVFNVASRQQVAERLAQK-GAVWC 119

Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702
             T +G+ K     L+Q           +LE+  L K      + L     +   R+H  
Sbjct: 120 DTTPSGKPKVDEATLKQ--NEKIAEAALVLEYLTLQKRYGMLKNWLDAV--QDDGRIHGR 175

Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
            +    +TGR+    PN+  IP  +      R+ F+ P   KL+  D S +ELR+LAH  
Sbjct: 176 VNTCGAVTGRMTHSSPNMAQIPSDS----LYRQCFVVPEGSKLVGIDASGLELRMLAHYM 231

Query: 763 KITPLYQ 769
                  
Sbjct: 232 DDPEYTD 238


>gi|47934614|gb|AAT39745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934636|gb|AAT39756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934640|gb|AAT39758.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934764|gb|AAT39820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934772|gb|AAT39824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934774|gb|AAT39825.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934778|gb|AAT39827.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934810|gb|AAT39843.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934832|gb|AAT39854.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 28/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           KLI  D S +ELR+LAH  +         +  DIH 
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|262212335|gb|ACY35784.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 31/216 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SL 775
           PNL  +P   +    ++           + +D S +ELR L H        +  E   + 
Sbjct: 1   PNLAQVPSAHEYRSLLK----PSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNG 56

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADY 831
           DIH  +A EI+G +        R+  K + + +IYG    +L       +S A     + 
Sbjct: 57  DIHTALA-EIYGTD--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
             +      G  +     +   + +G ++ + GR I                  AA+N  
Sbjct: 108 RGKIMQGLSGFADLNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYL 155

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +Q + A I +  +I  H+ L++  +    L  +HDE
Sbjct: 156 LQSAGAIICKLWVIRTHELLQEAGIDYYPLAFVHDE 191


>gi|262212331|gb|ACY35782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 74/203 (36%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A      
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA------ 63

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
              ++    R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 64  ---EIYATDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G +E + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLEGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|47934766|gb|AAT39821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 28/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVPAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           KLI  D S +ELR+LAH  +         +  DIH 
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|262212325|gb|ACY35779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + D+H  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDVHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++       L  +HDE
Sbjct: 169 IRTHELLQEAGTDYYPLAFVHDE 191


>gi|262212311|gb|ACY35772.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRRLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|262212307|gb|ACY35770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + +  IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCPIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I     N            AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRLRGKN-----------HAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|47934618|gb|AAT39747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 26/204 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E              I + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K I  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDGIDLPEAKXIARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPL 767
            L+  D S +ELR+LAH       
Sbjct: 175 SLVGIDASGLELRMLAHYMDDEDY 198


>gi|255595591|ref|XP_002536350.1| DNA polymerase I, putative [Ricinus communis]
 gi|223520014|gb|EEF26033.1| DNA polymerase I, putative [Ricinus communis]
          Length = 547

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 36/232 (15%)

Query: 758 LAHIAKITPLYQVFE-NSLDIHRMVAAEIFGVNI---------EKVSPQM---------- 797
            A  A+   L   F  + +DIH   A ++FG N          E+V+  +          
Sbjct: 301 AAGTAEWGSLRDAFSIDGMDIHTWTALDMFGHNPGTLFAGLQGEEVAAALKKWKKELGGD 360

Query: 798 RRHAKTINFSIIYGISPFRL------ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
           R+  K  N S++Y +  F L         +     EA+D   ++   +  +  + + T+ 
Sbjct: 361 RQTGKVGNLSLLYAMQAFGLQEAAAKNYNIHWTLEEASDVRSKWLAAYVEVDLWHKWTEL 420

Query: 852 FVRQNGYVE-----TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
             ++  Y+        FG++  Y      +  I      AA++   Q + ADI       
Sbjct: 421 NPKEEVYIPDPDRGGKFGKKQVYAAYTLGERLIYAFGLNAALSYEDQSTGADIL----GL 476

Query: 907 VHKSLEDHKLATK-MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           V +    H    K ++ Q+HDE++FE+P++++   + +I   M  A    ++
Sbjct: 477 VMQEFRQHPGVFKCIVNQVHDEVLFEIPDDKVDEYNAVISRVMTDAAAHYLS 528



 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 29/237 (12%)

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD----LSGEKFNLSSPKQ- 628
           +P +  + QM  TG+   Q+  +         +      + +    L+     LS+P+  
Sbjct: 3   EPQVWDIVQMRETGMPWSQEEAENYVLAQWAKVAEHAAKLIEMEPSLAPFSAALSNPEAG 62

Query: 629 LGDIL-------FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE-WRQLSKI 680
           +   L       F+          K+G +K   +DL ++        K   E W  L+  
Sbjct: 63  IKADLKAAIGQAFSNRGIELQMTEKSGAFKIGEKDLRRVKAAVVEDAKPFFEEWVALN-- 120

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLAST----MTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           ++  A  +   ++K   R +      +T    +TGRL+S EPN Q  P         R  
Sbjct: 121 RAKKAGGMAREVSKYASRSYDGRLHPNTGHGPVTGRLSSSEPNCQQFPRD----PGFRAI 176

Query: 737 FISPPTKKLISADYSQIELRILAHIA--KITPLYQVFENSL----DIHRMVAAEIFG 787
             S P  K++SADYS +++R+ A  A      +   + +      D++  +A  I G
Sbjct: 177 VRSRPGFKIVSADYSALDMRVGAACAIRAQRQILDAYMDERAVPHDVYLCIARVIEG 233


>gi|262212055|gb|ACY35644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R   +  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSDS----RFRELSLPSPNQVMVGADLAGIELRMLSHFP------ARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R   KT+ ++ +YG    ++               +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + +     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAHIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +QG+ A + +R M+    +L+   L    L  +HDE
Sbjct: 157 LQGNPAILAKRWMVINQNNLKLLNLCCSQLAFVHDE 192


>gi|323943783|gb|EGB39879.1| DNA polymerase I [Escherichia coli H120]
          Length = 71

 Score = 94.3 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 38  IAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97
           + G  NML  L+   +     +H AV+FD    TFR+E++  YK++RP +P+ L  Q+  
Sbjct: 1   MYGVLNMLRSLIMQYK----PTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEP 56

Query: 98  VRLATQAFGIPAIEI 112
           +    +A G+P + +
Sbjct: 57  LHAMVKAMGLPLLAV 71


>gi|47934718|gb|AAT39797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 94.3 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D    +++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGSKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +   D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKV---LEGIDRPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 VLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934658|gb|AAT39767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 94.3 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGEK-------FNLS 624
           E  G ++D      +  ++   + S+E  + ++            +G++       FN  
Sbjct: 1   ERNGFKLDIPFAHSLMMDLMFEMNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L       T+ G      +    +   D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-KGLGVTFNKMTEKGNIIVDEKV---LEGIDRPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R+ +      
Sbjct: 116 IDSWLGAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRQCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 VLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|262212293|gb|ACY35763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 94.3 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A      
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA------ 63

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
              ++    R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 64  ---EIYRTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|47934712|gb|AAT39794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 94.3 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 80/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D    +++  ++   + ++E  +             + +G++       FN  
Sbjct: 1   ERNGFKLDVSYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    +   D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKV---LEGIDRPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LA             N  DIH 
Sbjct: 175 VLVGIDASGLELRMLARYMDDEDYTNEILNG-DIHT 209


>gi|270627023|ref|ZP_06221947.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270317629|gb|EFA29059.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 81

 Score = 94.3 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
               L +T+    +D E VI+K+GIPPE ++   AL GDS DNIPG+ G+G KTA  LLQ
Sbjct: 3   DNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLALMGDSADNIPGVAGVGEKTALGLLQ 62

Query: 210 EYGNLENILINASRIKQ 226
             G++  I  N  ++ +
Sbjct: 63  GIGSMAEIYANLEKVAE 79


>gi|289812259|ref|ZP_06542888.1| exonuclease IX [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 84

 Score = 94.3 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
              L G S   +PG+ GIG K+A  LL ++ NLE I  +   + +K  R+ +  + E A 
Sbjct: 1   YVGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKW-RKKLETHKEMAF 59

Query: 242 LSRKLVMLRTDVPITIPLEHLIL 264
           L R +  L+TD+ I   L+ L L
Sbjct: 60  LCRDIARLQTDLHIDGNLQQLRL 82


>gi|47934830|gb|AAT39853.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 94.3 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 28/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D      +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVKQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           KLI  D S +ELR+LAH  +         +  DIH 
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|47934740|gb|AAT39808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934806|gb|AAT39841.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 28/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      +T+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-EGVGVKFKLQTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PN+  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNMAQVPSVSAPYGRECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           KLI  D S +ELR+LAH  +         +  DIH 
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|262212263|gb|ACY35748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S  ELR L H        +  E   + DIH  +A  I+G 
Sbjct: 10  HEYRSLFEPSDNHLQVGSDASGPELRCLGHYLSRYDGGKFAEEVVNGDIHTALAG-IYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  +HDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFVHDE 191


>gi|262212255|gb|ACY35744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + G  I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGGPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|47934768|gb|AAT39822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 28/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           KLI  D S +ELR+LAH  +         +  DIH 
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|47934780|gb|AAT39828.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 28/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           KLI  D S +ELR+LAH  +         +  DIH 
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNGILSG-DIHT 208


>gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 105/727 (14%), Positives = 208/727 (28%), Gaps = 185/727 (25%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D     P+ +A       +     +    +        D T   TL  ++ + L     +
Sbjct: 14  DLETYSPVPMAHGVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALH----D 69

Query: 460 EHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
              L   HN  +D+ VL   GI   +  + D M  + +  S   +  + ++ +       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHCGIDIPLERWRDSMAQA-LAHSLPGA--LGTLCELLRVPVE 126

Query: 518 KEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL--- 572
               K  K  + +             A  +++       +   +  V  +  V +RL   
Sbjct: 127 HAKDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSH 186

Query: 573 -----DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
                +  +  +   +   G+ ID DL++     + +   +L +    L+G     ++ +
Sbjct: 187 NYAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQR 246

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
              D L   L    G      Q  T A+ ++     +  + + +   RQ S   +    +
Sbjct: 247 ---DALLQHLNTAHGVALPDMQQHTVARCVDDPALPE-TVRELLSIRRQASSTSTAKYQA 302

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI-------------- 733
           L +  +   +   T     ++ TGR A       N+P  T   + I              
Sbjct: 303 LLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDL 362

Query: 734 -------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN------- 773
                        R   I+P  KKL+ AD S IE R+LA +A  TP    F         
Sbjct: 363 VFDDVMALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGV 422

Query: 774 ---------------------------------SLDIHRMVAAEIFGVNIEKVSPQMRRH 800
                                              DI++   A  FG+  + VS + R+ 
Sbjct: 423 DGTWHTGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQI 482

Query: 801 AKTINFSI--------------IYGISPFRLATQLRIPR---SEAADYIK---------- 833
            K    ++              +Y I    +A Q  +P     +A + ++          
Sbjct: 483 GKVQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQQATELLEWTKANHRPTF 542

Query: 834 ---------------RYFHRFPGIHEYIEKTK----------NFVRQNGYVETIFGRRIH 868
                           + +  P I  + +  +                  + T+  RR  
Sbjct: 543 DLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETAHTCCGI-TVQYRRAW 601

Query: 869 YDEINSPKSSIRNINER---------------------------AAINAPIQGSAADITR 901
                     +     R                             +    Q  + D+  
Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVLA 661

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE---EITTASQIIVHSMEKACLPKINL 958
             M ++  +         ++L +HDE++ E  +         + ++      A  P    
Sbjct: 662 ACMPAIEAA------GYSIVLTVHDEIITEADDHPCFNAAHLAALM------ATPPPWAE 709

Query: 959 RVPLKVN 965
            +PL   
Sbjct: 710 GLPLAAE 716


>gi|262212277|gb|ACY35755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 27/202 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHD 926
           I  H+ L++  +    L  IHD
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHD 190


>gi|47934666|gb|AAT39771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 27/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGEK-------FNLS 624
           E  G ++D      +  ++   + S+E  + ++            +G++       FN  
Sbjct: 1   ERNGFKLDIPFAHSLMMDLMFEVNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L       T+ G      +    +   D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-KGLGVTFNKMTEKGNIIVDEKV---LEGIDRPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    + K   RVH        +TGR+    PN+  +P +    G + R+ +      
Sbjct: 116 IDSWLGAV-KDDGRVHGRVITNGAVTGRMTHQSPNMAQVPAVSAPFGTECRQCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            L+  D S +ELR+LAH            N  DIH 
Sbjct: 175 VLVGIDASGLELRMLAHYMDDEDYTNEILNG-DIHT 209


>gi|47934726|gb|AAT39801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 27/202 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENI-------------YDLSG-------EKFNL 623
           E  G +++Q    Q+ + +   L S++  +             +  SG       E FN 
Sbjct: 1   ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
            S +Q+ + L  K  +    +T+ G      +    +   D P  K + E+  L K +  
Sbjct: 61  GSRQQIAERLIEK-GWKPTKRTEKGSVIVDEEV---LASLDYPEAKALAEYMMLQK-RIA 115

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPT 742
             DS    + K   RVH        +TGR+  + PN+  +P   +  G + R  +     
Sbjct: 116 QIDSWLEAVGKDG-RVHGRVITNGAVTGRMTHMSPNMAQVPNSGSPYGHECRDLWTVEKG 174

Query: 743 KKLISADYSQIELRILAHIAKI 764
            KL+  D + +ELR+LAH    
Sbjct: 175 YKLVGIDAAGLELRMLAHYMND 196


>gi|307107569|gb|EFN55811.1| hypothetical protein CHLNCDRAFT_145313 [Chlorella variabilis]
          Length = 494

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 103/271 (38%), Gaps = 63/271 (23%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIF 65
           L LVD ++ + RA       +R+   LP +++A  F + L  L   +  +        +F
Sbjct: 9   LLLVDAANVLSRA----RADTRRGCRLPGDSVAASFADWLRFLAAVAEPQL----LVAVF 60

Query: 66  DYPA------VTFRNEIYPDY-----------------------------KANRPKIP-- 88
           D P          R ++ P+Y                              ANRP +P  
Sbjct: 61  DTPKSRRLQQPQQREQLAPEYLQHRKRRKLQQAGEVAAASTSNGTAGSSTGANRPSLPGG 120

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG--FAVTIISTDKDLMQ 146
           + L    P  +   Q  G+      G+EADD +A       +     +V + S D D++Q
Sbjct: 121 DPLR---PFKQQVEQLGGVYLEAAGGWEADDGMAAVCRAVHQRHPAASVVVASGDTDMLQ 177

Query: 147 LVSPTTCL---------YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           L++P                +  E +  E   ++ G PP       A TG    +I G  
Sbjct: 178 LLAPQVSWLQLHNQTSLGCPLGAELVTAEAFQQQHGFPPSAYPDWLAFTGKKEASIAGA- 236

Query: 198 GIGYKTAALLLQEYGNLENILI--NASRIKQ 226
            +G +TAA LL  YG+LE +L    A ++K 
Sbjct: 237 SVGARTAAKLLGRYGSLEAVLAASAAGQLKG 267


>gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 102/694 (14%), Positives = 198/694 (28%), Gaps = 184/694 (26%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D     P+ IA       +     +    I        D T   T+ +E+ + L     N
Sbjct: 14  DLETYSPVPIAHGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALH----N 69

Query: 460 EHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
              L   HN  +D+ VL   GI   +  + D M  + +  S   +  + ++ +       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHCGIDIPLERWRDSMAQA-LAHSLPGA--LGTLCELLRVPVE 126

Query: 518 KEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL--- 572
           +   K  K  + +             A  +++       +   +  V  +  V +RL   
Sbjct: 127 QAKAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSH 186

Query: 573 -----DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
                +  +  +   +   G+ +D DL +     + +   +L E   DL+          
Sbjct: 187 NYTGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAG-------- 238

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII-----KNILEWRQLSKIKS 682
            +      +        T+ G      Q      C D+P++     + +   RQ S   +
Sbjct: 239 -VVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTST 297

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI--------- 733
               +L N  +   +   T     ++ TGR A       N+P  T     I         
Sbjct: 298 AKYQALLNCTSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKA 357

Query: 734 ------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-- 773
                             R   I+P  KKL+ AD S IE R+LA +A  TP    F +  
Sbjct: 358 GCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFD 417

Query: 774 --------------------------------------SLDIHRMVAAEIFGVNIEKVSP 795
                                                   DI++   A  FG+  + V+ 
Sbjct: 418 TCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTK 477

Query: 796 QMRRHAKTINFSI--------------IYGISPFRLATQLRIPRSEAAD----------- 830
           + R+  K    ++              +Y I    +A Q  +P     +           
Sbjct: 478 EQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQEAVEALQWTKAN 537

Query: 831 -----------------YIKRYFHRFPGIHEYIEKTK----------NFVRQNGYVETIF 863
                            + + + +  P I  + +  +                  +   +
Sbjct: 538 QRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHTCCGITMQY 597

Query: 864 GR---RIHYD-----------------------EINSPKSSIRNINERAAINAPIQGSAA 897
            R   R+H                            + K +         +    Q  + 
Sbjct: 598 SRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSR 657

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           D+    M ++  +        +++L +HDE++ E
Sbjct: 658 DVLAACMPAIEAA------GYQIVLTVHDEIITE 685


>gi|47934834|gb|AAT39855.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 28/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWGVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           KLI  D S +ELR+LAH  +         +  DIH 
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|26989000|ref|NP_744425.1| phage exonuclease, putative [Pseudomonas putida KT2440]
 gi|24983821|gb|AAN67889.1|AE016421_1 phage exonuclease, putative [Pseudomonas putida KT2440]
          Length = 199

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 78/227 (34%), Gaps = 32/227 (14%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           M+  L+  +  +       ++F    V +R  + P YK NR K  +      PL+R    
Sbjct: 1   MVQNLIDKTGADE----ALLVF-SDKVNWRKTVLPTYKHNRSKTVQ------PLLRSHLT 49

Query: 104 AF---GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           A+     P+I     E DD+       A K G  + + S DKD   +       Y+   +
Sbjct: 50  AWAQETFPSISKPTLEGDDVCGILLTRARKFGEEIVVASIDKDFKTVPGHH---YNFNTD 106

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              ++      +          Q L GD+ D   G PGIG   A  LL +    E ++  
Sbjct: 107 TFFEVTEEEADY------WHLYQTLMGDTTDGYSGCPGIGPVAAKRLLDKSPTWETVVAA 160

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
             +              E A +  ++  +         L+ + L   
Sbjct: 161 FEKAGL---------CEEEALVQARVARILRSSDYDFRLKKVKLWSP 198


>gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 128/363 (35%), Gaps = 77/363 (21%)

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396
               + SE++P     E  Q  S   +      +  +   ++  + K + +  A      
Sbjct: 583 PVPAMPSEESPSTEQPEERQTFSNDLVMVVDSVEKAS-MVVEHLMSKYKDVVHAC-DTEV 640

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI-DLSVHTSQDSTGKNTLTKEILSYLKK 455
             +D  +  P+            T F +      D     ++         +++L   K+
Sbjct: 641 TEIDVKNESPVG-------HGRITCFSIYCGPTADFGDGKNRLWIDVLDGGEDVLKVFKR 693

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS----SHDIASIAQ 510
           +FE+    K+ HN  +DK VL R+GI  +GF  D + ++ + DS R      + +  ++ 
Sbjct: 694 YFESPSIKKVWHNYSFDKHVLGRHGIHPQGFHADTIHLARLYDSARRGAKGGYSLEVLSA 753

Query: 511 K------WLSYTRK-------------EILKSR--KSSIPIDKIS----------DSQVQ 539
                  ++ ++ +             E+      K      KI           D +++
Sbjct: 754 DEKVMDGYIRHSTEVDESVLAGKKSMKELFGKANLKKDGTPGKIKTIPPVHELQRDEELR 813

Query: 540 E----HAIENSNVILQLWLLLRPKL-----------IVEKLLHVYERLDKPMIDVVSQME 584
           +    ++  ++    +L+L L+ KL               +   YE+  +P  +V+ QME
Sbjct: 814 DAWIYYSTFDAVCTWRLFLSLQQKLSSTPWNVADLKKKGSMYDFYEKYWRPFGEVLVQME 873

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENI-----------YDLSGEKFNLSSPKQLGDIL 633
             G+ +D + L  V     + +   ++ I           Y     + N+ S  Q+   L
Sbjct: 874 ADGMLVDCNHLATV-----EKVAKAQQEISVSRFRKWAAKYCADAAQMNVGSDAQIRQFL 928

Query: 634 FTK 636
           +  
Sbjct: 929 YGG 931


>gi|262212269|gb|ACY35751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 27/202 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAMQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHD 926
           I  H+ L++  +    L  IHD
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHD 190


>gi|255521252|ref|ZP_05388489.1| 5'-3' exonuclease [Listeria monocytogenes FSL J1-175]
          Length = 83

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 2  QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
          +   +L +VDG + ++RAFYAT +  +      G+P N + GF   ++  ++    +S  
Sbjct: 3  ENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAIR----QSNP 58

Query: 59 SHFAVIFDYPAVTFRNEIYPDYKAN 83
          +H  + +D  + TFRNE+Y  YKA 
Sbjct: 59 THTLICWDMGSQTFRNELYDGYKAG 83


>gi|262342185|gb|ACY54603.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 188

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        I +  S +ELR L H        ++ E   + DIH  +A EI+G 
Sbjct: 7   HEYRSLFKPSDNHLQIGSGASGLELRCLGHYLSRYDGGKLAEEVVNGDIHTALA-EIYGT 65

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 66  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 117

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 118 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 165

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 166 IRTHELLQEAGIDYYPLAFIHDE 188


>gi|47934788|gb|AAT39832.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 26/204 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEEN------------IYDLSGEK-------FNLS 624
           E  G ++D +   ++  ++   + ++E              I + +G++       FN  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K +   
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDGIDLPEAKAVARYMMLQK-RVAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS    +     RVH        +TGR+  L PN+  +P +    G + R  +      
Sbjct: 116 IDSWLKAVXDDG-RVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTVDEGN 174

Query: 744 KLISADYSQIELRILAHIAKITPL 767
            L+  D S +ELR+LAH       
Sbjct: 175 SLVGIDASGLELRMLAHYMDDEDY 198


>gi|47934828|gb|AAT39852.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 85/215 (39%), Gaps = 27/215 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           KLI  D S +ELR+LAH  +         +    H
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNEILSGEHPH 208


>gi|229472175|gb|ACQ72602.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472207|gb|ACQ72618.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 87/204 (42%), Gaps = 30/204 (14%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPGQIMVGADLAGIELRMLSHF------LAKYDQGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKQLSSSAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + ++  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RTAYVDAIDGLDKLLDAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMISVHKSLEDHK 915
           +QG++A + +R M+    +L+   
Sbjct: 157 LQGNSAILAKRWMLINQNNLKQLN 180


>gi|47934776|gb|AAT39826.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 28/216 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P  +    K  R+F   P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFRCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           KLI  D S +ELR+LAH  +         +  DIH 
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 208


>gi|262212309|gb|ACY35771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  + + + +IYG    +L       +S A     +   +      G+ +
Sbjct: 69  D--------RKSGEGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGLAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|213021568|ref|ZP_03336015.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 70

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962
           AMI+V   L+  +   +M++Q+HDELVFEV ++++   ++ I   ME        + VPL
Sbjct: 1   AMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCT----RIDVPL 56

Query: 963 KVNIKVSNNWQEEN 976
            V +    NW + +
Sbjct: 57  LVEVGSGENWDQAH 70


>gi|47934826|gb|AAT39851.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 84/215 (39%), Gaps = 27/215 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +               EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQTTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           KLI  D S +ELR+LAH  +         +    H
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERYTNGILSGEHPH 208


>gi|47934728|gb|AAT39802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 7/147 (4%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           E FN  S +Q+ + L  K  +    +T+ G      +    +   D P  K + E+  L 
Sbjct: 57  EPFNPGSRQQIAERLIEK-GWKPTKRTEKGSVIVDEEV---LASLDYPEAKALAEYMMLQ 112

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAF 737
           K +    DS    + K   RVH        +TGR+  + PN+  +P   +  G + R  +
Sbjct: 113 K-RIAQIDSWLEAVGKDG-RVHGRVITNGAVTGRMTHMSPNMAQVPNSGSPYGHECRDLW 170

Query: 738 ISPPTKKLISADYSQIELRILAHIAKI 764
                 KL+  D + +ELR+LAH    
Sbjct: 171 TVEKGYKLVGIDAAGLELRMLAHYMND 197


>gi|330883874|gb|EGH18023.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 108

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            ++ P++ V++ +E  G  +D +LL   S E+   + +LE   + ++GE+FNL SPKQLG
Sbjct: 1   DIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLG 60

Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673
            IL+ KL  P  +KT TGQ  T    L       + +   +L+
Sbjct: 61  VILYEKLGMPILSKTATGQASTAEAVLALSWERPH-LAPLMLK 102


>gi|213029602|ref|ZP_03344049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 79

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 57/79 (72%)

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
           +  YF R+PG+ EY+E+T+   ++ GYVET+ GRR++  +I S  ++ R   ERAAINAP
Sbjct: 1   MDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAP 60

Query: 892 IQGSAADITRRAMISVHKS 910
           +QG+AADI +RAMI+V   
Sbjct: 61  MQGTAADIIKRAMIAVDAW 79


>gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 105/726 (14%), Positives = 204/726 (28%), Gaps = 183/726 (25%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D     P+ IA       +     +    +        D T   TL  ++ + L     +
Sbjct: 14  DLETYSPVPIAHGVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALH----D 69

Query: 460 EHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
              L   HN  +D+ VL   GI   +  + D M  + +  S   +  + ++ +       
Sbjct: 70  PGVLLYFHNSHFDRTVLRHCGIDIPLERWRDSMAQA-LAHSLPGA--LGTLCELLRVPVE 126

Query: 518 KEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL--- 572
               K  K  + +             A  +++       +   +  V  +  V +RL   
Sbjct: 127 HAKDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSH 186

Query: 573 -----DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
                +  +  +   +   G+ ID DL++     + +   +L +    L+G     ++ +
Sbjct: 187 NYAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQR 246

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687
              D L   L    G      Q  T A+ ++     +  + + +   RQ S   +    +
Sbjct: 247 ---DALLQHLNTAHGVALPDMQQHTVARCVDDPALPE-TVRELLSIRRQASSTSTAKYQA 302

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI-------------- 733
           L +  +   +   T     ++ TGR A       N+P  T   + I              
Sbjct: 303 LLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDL 362

Query: 734 -------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN------- 773
                        R   I+P  KKL+ AD S IE R+LA +A  TP    F         
Sbjct: 363 VFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGV 422

Query: 774 ---------------------------------SLDIHRMVAAEIFGVNIEKVSPQMRRH 800
                                              DI++   A  FG+  + VS + R+ 
Sbjct: 423 DGCWHTGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQI 482

Query: 801 AKTINFSI--------------IYGISPFRLATQLRIPRSEAAD---------------- 830
            K    ++              +Y I    +A Q   P     +                
Sbjct: 483 GKVQELALGYGGGVGAFAAFAALYHIDLEAMAAQAVFPPLLLQEATELLEWTKANHRPTF 542

Query: 831 ------------YIKRYFHRFPGIHEYIEK---TKNFVRQNGYVE------TIFGRRIHY 869
                       + + + +  P I  + +           +          T+  RR   
Sbjct: 543 DLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTHTCCGITVQYRRAWL 602

Query: 870 DEINSPKSSIRNINER---------------------------AAINAPIQGSAADITRR 902
                    +     R                             +    Q  + D+   
Sbjct: 603 RLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVLAA 662

Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEE---EITTASQIIVHSMEKACLPKINLR 959
            M ++  +         ++L +HDE++ E  +         + ++      A  P     
Sbjct: 663 CMPAIEAA------GYSIVLTVHDEIITEADDHPCFNAAHLAALM------ATPPPWAEG 710

Query: 960 VPLKVN 965
           +PL   
Sbjct: 711 LPLAAE 716


>gi|229472297|gb|ACQ72663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 91.6 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDSGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAEAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    +  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPMAFIHDE 191


>gi|47934814|gb|AAT39845.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 166

 Score = 91.6 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN+ S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K
Sbjct: 14  EFNVGSRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK 69

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFI 738
            ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  + 
Sbjct: 70  -RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWC 126

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
            P   KLI  D S +ELR+LAH  +         +  DIH 
Sbjct: 127 VPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSG-DIHT 166


>gi|47934644|gb|AAT39760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 91.6 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 29/215 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGEK-------FNLS 624
           E  G   D     ++  +    +  +E  + ++            +G++       FN  
Sbjct: 1   ERNGFAFDFPRACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +Q+ D L  K        T TG+ K   + LEQ    + P    +LE+  LSK +   
Sbjct: 61  SRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNA--NIPEAALVLEYLTLSK-RIGM 116

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
             S  + +     R+H   +    +TGR+    PN+  IP ++      R  F      K
Sbjct: 117 VRSWLDAVGDDG-RIHGRVNTCGAITGRMTHSSPNMAQIPSES----LYRSCFTVDEGNK 171

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           L+  D S +ELR+LAH         +  +  DIH 
Sbjct: 172 LVGIDASGLELRMLAHYMDDPEYTDLILHG-DIHT 205


>gi|148747813|ref|YP_001285779.1| DNA polymerase [Phormidium phage Pf-WMP3]
 gi|146230046|gb|ABQ12454.1| DNA polymerase [Phormidium phage Pf-WMP3]
          Length = 220

 Score = 91.6 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 19/226 (8%)

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +        L +VF +  D+H+  A +I+G++        R+ AK + F   +G    ++
Sbjct: 5   MEMYYDEPRLSKVFVDGEDVHQFFA-DIYGID--------RKIAKNVTFGYAFGAGATKM 55

Query: 818 ATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY-DE 871
           A         +P S     +     R P +           R NG V      + +   E
Sbjct: 56  AATASRGGSVVPVSTIKGALSSLQDRLPALPALKTLVVEHARDNGGVFHDLLGQRYVVPE 115

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           + S   S R   ER A N  +QG  A  T    + +       +   K+   +HDE+ + 
Sbjct: 116 LLSKNKSERAAGERRAFNYWVQGFEA--TAFRYLQLKARPVQFEYGAKLAFVVHDEVGYL 173

Query: 932 VPEEEITTASQIIVHSM--EKACLPKINLRVPLKVNIKVSNNWQEE 975
                    ++ +       +     +   + L+   +V   W E 
Sbjct: 174 CQSVVAEEFAKQMTSIYTTREVFPSDMTSGLTLEAEFQVGQTWLEA 219


>gi|294337982|emb|CBJ93820.1| Putative phage RNase H [Campylobacter phage CP220]
 gi|294338177|emb|CBJ94214.1| Putative phage RNase H [Campylobacter phage CPt10]
          Length = 352

 Score = 91.6 bits (226), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 85/360 (23%), Positives = 134/360 (37%), Gaps = 67/360 (18%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNA--IAGFC-NMLWKLLQNSRKESIA--S 59
           + L D SS I+RA + +       K DG  +    I+G    ++ +LL+N R   +   +
Sbjct: 1   MILYDLSSLIHRALHTSIKQMNPHKKDGKYITEEFISGTIFRIIEELLENYRLYRVKYNT 60

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRP--------KIPEMLLPQLPLVRLATQAFGIPAIE 111
               I D+    +R  +YPDYKA R            E+      L+R+        AI 
Sbjct: 61  MVICIDDHSVPYWRKSLYPDYKAQRKTQREESEVNFKEVYKHINILIRILNDYTPFKAIG 120

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK 171
           + G EADDII   T    K   ++ I+S DKD  QL      L D  +   I  + V+  
Sbjct: 121 VPGAEADDIIGVLTRKFCKA-ESILILSPDKDFKQL----HKLGDIKQYSAITNKWVVND 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE------------NILI 219
               PE    +    GD+ DN+P +      T       Y   E             I+ 
Sbjct: 176 ---DPEGWERIHCCLGDAADNVPRVVDFSEFT-PEFKAYYQGTELDFYKLDENLKLGIIN 231

Query: 220 NASRIKQ-----KKRR-------ENILEYAE-TARL------------SRKLVMLRTDVP 254
           N + +       KK+R       + I E+    A L            + KLV + +++P
Sbjct: 232 NFNEVYPDVEVYKKQRFGEAALNKKIKEFGSLDAFLDSNEIYRLNYNRNYKLV-MDSEIP 290

Query: 255 ITIPLEHLIL-----EDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
           I I LE L        D N   L  +      T      +  ++  +  IE    +++ +
Sbjct: 291 IDIELEILKKYTESSTDFNMENLNKYFSFYNITTCSQWFSQLWNEMSKPIEMTPWNVDFS 350


>gi|307105222|gb|EFN53472.1| hypothetical protein CHLNCDRAFT_136747 [Chlorella variabilis]
          Length = 911

 Score = 91.6 bits (226), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 142/444 (31%), Gaps = 88/444 (19%)

Query: 404 SKPIAIA---ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
           S+ + +    I+  +     +      F+ L+  T            +      +   N 
Sbjct: 441 SRLVGLCLLPIAVDELSGGGAPGPTMYFMPLAAGTFGGHEVAEEAATQGRDLAAQLVANP 500

Query: 461 HFLKI-GHNIKYDKLVLHRYGISMRGFE-----DIMLMSYVLDS--------GRSSHDIA 506
               I   N++    +L    +++         D  L++++L+           S + + 
Sbjct: 501 EGGAILAFNMQGLLRLLGEARVALPAPHRLALVDPRLLAWLLEPQLLQGSDKELSDYSLH 560

Query: 507 SIAQKWLSYTRK-------------------------------EILKSRKSSIPIDKISD 535
            +A + L                                           +       + 
Sbjct: 561 ELAGRHLGGMPAGASTPGAAAGSGGGDGSPDAAGPGAGAWGAAVGPPGGAAGNVSGAAAA 620

Query: 536 SQVQEHAIENSNVILQLW----LLLRPKLIVEKLLHVYERLDK-----------PMIDVV 580
           S      ++    +L++       L  +L   +L     + +             +  ++
Sbjct: 621 SGGAVSPLQRMRRVLEVAVSLGERLHVQLSEAQLPPETMQQEMQARQASLAATRAVAALL 680

Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640
           +QME  G+  D  LL++       ++  +EE   +L+G  FN +SP+QL ++L++ LK P
Sbjct: 681 AQMEGAGLGFDPWLLREAGRVARSHMSRIEEECAELAGRPFNPASPQQLAEVLYSVLKLP 740

Query: 641 SG---AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD-SLPNHI---- 692
                 ++       T +   +     +P+   +LE+R L    S + +           
Sbjct: 741 PPTGRGRSSAKTHLRTDEQALEALRPLSPLPGLVLEYRALQNFSSKWVEADWCRAAAAGF 800

Query: 693 ------------NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
                            RVH  +   ST TGRL+S  PNLQ        G  +    +  
Sbjct: 801 ESADAYAAARPGGGGWPRVHCCWHQTSTATGRLSSSAPNLQARSRMAAAGGAVLVVHL-- 858

Query: 741 PTKKLISADYSQIELRILAHIAKI 764
             + L+  D  Q++    A +A+ 
Sbjct: 859 HDELLVEVDARQVD---GAWVAQE 879



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 917 ATKMLLQIHDELVFEVPEEEIT--TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              +++ +HDEL+ EV   ++     +Q +   ME      + LRVPL V +K    W 
Sbjct: 851 GAVLVVHLHDELLVEVDARQVDGAWVAQELRRVMEGV----VQLRVPLAVKVKAGEQWG 905


>gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e]
 gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e]
          Length = 461

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 70/467 (14%), Positives = 150/467 (32%), Gaps = 68/467 (14%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +        T +      K +  + +  +            F +  V     + G +   
Sbjct: 1   MNLLYLDTETFSEADL--KKVG-SYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPR 57

Query: 447 KEILSYLKKFFENEHFLKIGHN-IKYD-KLVLHRYGISM--RGFEDIMLMSYVLDSGRSS 502
               + LK    + +   +G N + +D  ++ H +G  +      D M++++        
Sbjct: 58  DLRRAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAF-------R 110

Query: 503 H----DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN--SNVILQLWLLL 556
           H     +A++ +         + K ++    I + S    + + I    ++   + W   
Sbjct: 111 HALPGSLAALCEVL--NIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEF 168

Query: 557 --RPKLIVEKLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
               K  +  +  VY+++        +  ++ +   +   G ++D  L +     ++++ 
Sbjct: 169 IAYAKSDITSMREVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHK 228

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             L+E      G           G      L+  + A       K+T  DL       + 
Sbjct: 229 EELQEEAQRKYGGSLT-------GKDFLPILQELAPAHRIHNAQKSTLNDLLADEDLPDD 281

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI- 725
               I      +   ST    L    +   +R        +  T R A      QN+   
Sbjct: 282 ARTIIEMRLGAASTASTKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARG 341

Query: 726 ---KTDLGQKI----------------------RRAFISPPTKKLISADYSQIELRILAH 760
                +L + I                      R   I    +K + ADYS +E R LA 
Sbjct: 342 YYHDDELDRGIAALLKGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAW 401

Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ---MRRHAKTI 804
           +A        F   LDI+ + A ++FG++ + +  +   +R+  K  
Sbjct: 402 LAGEETALDTFRAGLDIYCVTAGKMFGMDPDDIKKERKDLRQIGKAC 448


>gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1]
 gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1]
          Length = 655

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 74/524 (14%), Positives = 160/524 (30%), Gaps = 118/524 (22%)

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599
           ++A+ +++ ++ +W    P    E+    Y  +D        ++   GI +D +  + + 
Sbjct: 162 KYALIDTDAMVGVWENTVPLPAREQA---YFEMDM-------RINARGIGVDVEAAQAME 211

Query: 600 A-EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658
             +         E  Y   G    ++   ++ +   T L        +    K  A+D  
Sbjct: 212 DLKAFAEAQLDYEMAYLTDGGILAVTEVAKIKEYAAT-LGEDMDDAGRETLKKIAARDNL 270

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
             +     +I+  L+  +  K  +     L  H+     R+         ++GR  +   
Sbjct: 271 PDSLRQ--LIELRLDASRAPKKSAA---ILRAHVGG---RLQHHTIYHGALSGRSTARGA 322

Query: 719 NLQNI--------PIKTDLGQKIRRAFI-----------------------------SPP 741
                          KT   + I  A +                             + P
Sbjct: 323 GGAQTLNTARPRPGKKTADCEAILDACLRGDRAYLSSPEVGPILAALADAQRQLFRATKP 382

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
              L+ AD S IE R+   +A   P  + FE  +D +++ A +I+ +  + V+   R+  
Sbjct: 383 GHVLVGADLSGIEARMAPWLANDVPKLEAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVG 442

Query: 802 KTI-----NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT------- 849
           K               +       + +P  + ++ +  +    P    +           
Sbjct: 443 KVADLALGFGGGDGAFASMAANYGVHLPPEQVSEIVYNWRAGRPAFERWWSLCEYSVLMA 502

Query: 850 -------------KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI---- 892
                        ++F  Q  +V      R+H     +       ++     N PI    
Sbjct: 503 LDQPGREVVMPVGRDFCSQITFVRDARALRMHLPSGRAISYHNARLHLEPGANVPIAIYD 562

Query: 893 -------------------QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
                              QG A D+    ++ V +         +++  ++DE + EV 
Sbjct: 563 KPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-------EEIVHHVYDEALLEVL 615

Query: 934 EEEITTASQIIVHSM--EKACLPKINLRVPLKVNIKVSNNWQEE 975
            E      + +V  M   +A  P +    PL         W+++
Sbjct: 616 AELAALRQKQLVERMCRGEAWCPGL----PLGAEGWHGLRWRKD 655


>gi|302808415|ref|XP_002985902.1| hypothetical protein SELMODRAFT_424811 [Selaginella moellendorffii]
 gi|300146409|gb|EFJ13079.1| hypothetical protein SELMODRAFT_424811 [Selaginella moellendorffii]
          Length = 443

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 103 QAFGIPAIE---IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
           +    P +    +   EADD++ T              + TD+ L  ++ P   +  +  
Sbjct: 152 EFLSFPMLSSTLVDNAEADDVVTTLARQVTDRS-----LKTDRSLKAVLHPRIKISSSSF 206

Query: 160 EEKIDIEHVIKKWGIPPEK-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
            + I + +     G+  +   +  + L GD+ D  PG+PG G KTA  L++++G+LENIL
Sbjct: 207 RKTITLNNTNASLGLNWDFVYIQFRCLLGDAADGGPGVPGFGRKTALKLMRKHGSLENIL 266

Query: 219 --INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
                  + +  R++ + E++     + +++ LR D+ + +P+E
Sbjct: 267 SAAAIRAVGKPYRQDALKEHSVLLEKNMEVLSLRRDINVELPVE 310



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETARLSRKL 246
           + D +PG+PG    TA  L++++G+LEN++       + +   ++ + E++     + ++
Sbjct: 40  AADGVPGVPGF---TALKLMRKHGSLENLVSAAAIRTVVKPYMQDALKEHSVLLEKNLEV 96

Query: 247 VMLRTDVPITIPLEHLI 263
           + LR D+ + +P+E L 
Sbjct: 97  LSLRRDINVELPVEWLF 113


>gi|47934638|gb|AAT39757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 85/215 (39%), Gaps = 29/215 (13%)

Query: 584 EITGIQIDQDL----LKQVSAEISKNLLSL--------EENIYDLSGEK-------FNLS 624
           E  G   D D      ++    + + +  L        EE   + +G++       FN +
Sbjct: 1   ERNGFMFDYDAGSCLYRRQKERMGEIVTELQEVFPPIVEERWSEKTGKRLKDKVEVFNPA 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +Q+   L +K       +T+ G               D P    ILE+  L K  +  
Sbjct: 61  SRQQIARRLESK-GVVWEKRTEKGNIIVDETT--LGAYVDVPEAVLILEYLTLGKRSAMV 117

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
              L  +  +   R+H + +   T+TGR+    PN+  IP     G + R  F+ P  +K
Sbjct: 118 KGWLDAY--ESDGRIHGYVNSNGTVTGRMTHSNPNMAQIPS----GAEYRSCFVVPQGRK 171

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           L+  D S +ELR+LAH  +     Q   +  DIH 
Sbjct: 172 LVGVDASGLELRMLAHYMRDDAFTQEILDG-DIHT 205


>gi|302808413|ref|XP_002985901.1| hypothetical protein SELMODRAFT_424808 [Selaginella moellendorffii]
 gi|300146408|gb|EFJ13078.1| hypothetical protein SELMODRAFT_424808 [Selaginella moellendorffii]
          Length = 472

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 103 QAFGIPAIE---IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
           +    P +    +   EADD++ T              + TD+ L  ++ P   +  +  
Sbjct: 181 EFLSFPMLSSTLVDNAEADDVVTTLARQVTDRS-----LKTDRSLKAVLHPRIKISSSSF 235

Query: 160 EEKIDIEHVIKKWGIPPEK-MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
            + I + +     G+  +   +  + L GD+ D  PG+PG G KTA  L++++G+LENIL
Sbjct: 236 RKTITLNNTNASLGLNWDFVYIQFRCLLGDAADGGPGVPGFGRKTALKLMRKHGSLENIL 295

Query: 219 --INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
                  + +   ++ + E++     + +++ LR D+ + +P+E
Sbjct: 296 SAAAIRAVGKPYIQDALKEHSVLLEKNMEVLSLRRDINVELPVE 339



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETARLSRKL 246
           + D +PG+PG    TA  L++++G+LEN++       + +   ++ + E++     + ++
Sbjct: 40  AADGVPGVPGF---TALKLMRKHGSLENLVSAAAIRTVVKPYMQDALKEHSVLLEKNLEV 96

Query: 247 VMLRTDVPITIPLEHL 262
           + LR D+ + +PLE  
Sbjct: 97  LSLRRDIDVELPLEWC 112


>gi|304654266|gb|EFM47658.1| PsRxL467 [Phytophthora sojae]
          Length = 471

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 117/356 (32%), Gaps = 72/356 (20%)

Query: 370 KIVNTKDIQQWVQKLETIGSASF---KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            I + +  ++ + K+  +G   F         +D     P+   + T             
Sbjct: 65  LIQDEEGARRVLAKIRELGPGHFHACDTEVAQIDVKAVGPVGNGVVTCLSLYSGPDVDYG 124

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
               + V     + G        L   K F E+  +LK+ HN  +D+ VL+ +GI+++G 
Sbjct: 125 NGPYVWVDNLDSAEGT-------LQLFKDFLESREYLKVWHNYSFDRHVLYNHGINVQGL 177

Query: 487 -EDIMLMSYVLDSGR---SSHDIASIAQKWL---SYTRKEILK---------SRKSSI-- 528
             D M M+ + ++ R     + + ++    L       KE+             K  I  
Sbjct: 178 GGDTMHMARLWNTARFQHGGYSLEALTADLLLQRKKPMKELFGIPKLRKDGSKGKERIMP 237

Query: 529 PIDKIS-----DSQVQEHAIENSNVILQLWLLLRPKLIVE-------------------- 563
            ++++        +   +++ ++     L  +L+ KL                       
Sbjct: 238 TVEELQRFPEFRKRWIRYSVYDAESTWFLHRVLQHKLDQTFWFENAPKTNAAVNAAAAAA 297

Query: 564 ---------KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
                     +   Y +      + ++ +E  G+ +D + L  V  +  ++   LE  + 
Sbjct: 298 AVDEEPQTGSMYDFYRQYIILFGECLTDIERKGMHVDLEYLAGVEKQALEDRARLERLVL 357

Query: 615 DLS------GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
             +       E+ NL S  Q   +LF     P   + K  Q     +  E  N   
Sbjct: 358 KWASRYCDESERINLYSAAQKQQLLFA----PYYDEKKKKQVLPAERAFEVENTEG 409


>gi|229472565|gb|ACQ72797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F     +  + AD S +ELR L H        +  +     DIH  +A EI+G 
Sbjct: 10  HEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +++A     +   R      G   
Sbjct: 69  D--------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRSRIMANLDGFAA 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLWL 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ L++  +    +  +HDE
Sbjct: 169 LRSYELLDEAGIDYFPMAFVHDE 191


>gi|47934648|gb|AAT39762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934652|gb|AAT39764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934664|gb|AAT39770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 29/215 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGEK-------FNLS 624
           E  G   D  +  ++  +    +  +E  + ++            +G++       FN  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +Q+ D L  K        T TG+ K   + LEQ    + P    +LE+  LSK +   
Sbjct: 61  SRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNA--NIPEAALVLEYLTLSK-RIGM 116

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
             S  + +     R+H   +    +TGR+    PN+  IP ++      R  F      K
Sbjct: 117 VRSWLDAVGDDG-RIHGRVNTCGAITGRMTHSSPNMAQIPSES----LYRSCFTVADGNK 171

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           L+  D S +ELR+LAH         +  +  DIH 
Sbjct: 172 LVGIDASGLELRMLAHYMDDPEYTDLILHG-DIHT 205


>gi|47934818|gb|AAT39847.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 27/204 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHGPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPL 767
           KLI  D S +ELR+LAH  +    
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERY 197


>gi|229472563|gb|ACQ72796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F     +  + AD S +ELR L H        +  +     DIH  +A EI+G 
Sbjct: 10  HEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +++A     +   R          
Sbjct: 69  D--------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRSRIMANLDSFAA 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLWL 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ L++  +    +  IHDE
Sbjct: 169 LRSYELLDEAGIDYSPMAFIHDE 191


>gi|229472507|gb|ACQ72768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 84/192 (43%), Gaps = 26/192 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
            + R  F+  P + +++AD S IELR+L+H          +++      ++  +   VN 
Sbjct: 9   PRFRALFLPSPGQVMVAADLSGIELRMLSHF------LAKYDDGRYADILLNGDTHQVNA 62

Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGIHE 844
           +K+    R+  KT+ ++ +YG    ++             + +  +  + Y     G+ +
Sbjct: 63  DKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGLDK 121

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
            +        + G+++ I GR+I  D            +   A+N  +QG++A + +R M
Sbjct: 122 LL-AAIKTASERGFIKAIDGRKIMVD------------SPHKALNYCLQGNSAILAKRWM 168

Query: 905 ISVHKSLEDHKL 916
           +   ++++D  L
Sbjct: 169 VINQQNIKDLNL 180


>gi|229472353|gb|ACQ72691.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F     +  + AD S +ELR L H        +  +     DIH  +A EI+G 
Sbjct: 10  HEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +++A     +   R      G  E
Sbjct: 69  D--------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRSRIMANLDGFAE 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLWL 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ L++  +    +  IHDE
Sbjct: 169 LRSYELLDEAGIDYFPMAFIHDE 191


>gi|47934670|gb|AAT39773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 29/215 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGEK-------FNLS 624
           E  G   D  +  ++  +    +  +E  + ++            +G++       FN  
Sbjct: 1   ERNGFAFDFPVACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +Q+ D L  K        T TG+ K   + LEQ    + P    +LE+  LSK +   
Sbjct: 61  SRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNA--NIPEAALVLEYLTLSK-RIGM 116

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
             S  + +     R+H   +    +TGR+    PN+  IP ++      R  F      K
Sbjct: 117 VRSWLDAVGDDG-RIHGRVNTCGAITGRMTHSSPNMAQIPSES----LYRSCFTVADGNK 171

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           L+  D S +ELR+LAH         +  +  DIH 
Sbjct: 172 LVGIDASGLELRMLAHYMDDPEYTDLILHG-DIHT 205


>gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 712

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 102/697 (14%), Positives = 196/697 (28%), Gaps = 190/697 (27%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D     P+ IA       +     +    +        D T   T+ +E+ + L     N
Sbjct: 14  DLETYSPVPIAHGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH----N 69

Query: 460 EHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIM---LMSYVLDSGRSSHDIASIAQKWLS 514
              L   HN  +D+ VL   GI+  +  + D M   L   +   G     + ++ +    
Sbjct: 70  PAVLLYFHNSHFDRTVLRHCGINIPLERWRDSMAQALAHAL--PGA----LGTLCELLRV 123

Query: 515 YTRKEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
              +   K  K  + +             A  +++       +   +  V  +  V +RL
Sbjct: 124 PVEQAKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRL 183

Query: 573 --------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
                   +  +  +   +   G+ +D DL +     + +   +L E   DL+       
Sbjct: 184 PSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAG----- 238

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII-----KNILEWRQLSK 679
               +      +        T+ G      Q      C D+P++     + +   RQ S 
Sbjct: 239 ----VVQAATQRDALLHHLSTEHGVVLPDMQQHTVERCLDDPLLPETVRELLSIRRQAST 294

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI------ 733
             +    +L N  ++  +   T     ++ TGR A       N+P  T     I      
Sbjct: 295 TSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDA 354

Query: 734 ---------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF- 771
                                R   I+P  KKL+ AD S IE R+LA +A  TP  Q F 
Sbjct: 355 MKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFG 414

Query: 772 ---------------------------------------ENSLDIHRMVAAEIFGVNIEK 792
                                                      DI++   A  FG+  + 
Sbjct: 415 DFDTCQGVDGTWHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQA 474

Query: 793 VSPQMRRHAKTINFSI--------------IYGISPFRLATQLRIPRSEAAD-------- 830
           V+ + R+  K    ++              +Y I    +A Q  +P              
Sbjct: 475 VTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQQAVEALQWT 534

Query: 831 --------------------YIKRYFHRFPGIHEYIEKTK----------NFVRQNGYVE 860
                               + + + +  P I  + +  +                  + 
Sbjct: 535 KANHRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHTCCGIT 594

Query: 861 TIFGR---RIHYDEIN-----------------------SPKSSIRNINERAAINAPIQG 894
             + R   R+                             + K +         +    Q 
Sbjct: 595 VQYSRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQA 654

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            + D+    M ++  +         ++L +HDE++ E
Sbjct: 655 VSRDVLAACMPAIEAA------GYAIVLTVHDEIITE 685


>gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 195/702 (27%), Gaps = 200/702 (28%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D     P+ IA       +     +    +        D T   T+ +E+ + L     N
Sbjct: 14  DLETYSPVPIAHGVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALH----N 69

Query: 460 EHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
              L   HN  +D+ VL   GI+  +  + D M  + +  S   +  + ++ +       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHCGINIPLERWRDSMAQA-LAHSLPGA--LGTLCELLRVPVE 126

Query: 518 KEILKSRKSSIPID------------------KISDSQVQEHAIENSNVILQLWLLLRPK 559
           +   K  K  + +                       +Q  ++A  +   +  +   L   
Sbjct: 127 QAKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRL--- 183

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
                  H Y   +  +  +   +   G+ +D DL +     + +   +L E   DL+  
Sbjct: 184 -----PSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAG 238

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII-----KNILEW 674
                    +      +        T  G      Q      C D+P++     + +   
Sbjct: 239 ---------VVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIR 289

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI- 733
           RQ S   +    +L N  +   +   T     ++ TGR A       N+P  T     I 
Sbjct: 290 RQASTTSTAKYQALLNCTSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIA 349

Query: 734 --------------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
                                     R   I+P  KKL+ AD S IE R+LA +A  TP 
Sbjct: 350 VGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPK 409

Query: 768 YQVF----------------------------------------ENSLDIHRMVAAEIFG 787
            Q F                                            DI++   A  FG
Sbjct: 410 LQAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFG 469

Query: 788 VNIEKVSPQMRRHAKTINFSI--------------IYGISPFRLATQLRIPRSEAAD--- 830
           +  + V+ Q R+  K    ++              +Y I    +A Q  +P     +   
Sbjct: 470 IAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQEAVE 529

Query: 831 -------------------------YIKRYFHRFPGIHEYIEKTK----------NFVRQ 855
                                    + + + +  P I  + +  +               
Sbjct: 530 ALQWTKANHRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT 589

Query: 856 NGYVETIFGR---RIHYDEIN-----------------------SPKSSIRNINERAAIN 889
              +   + R   R+                             + K +         + 
Sbjct: 590 CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVE 649

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
              Q  + D+    M ++  +         ++L +HDE++ E
Sbjct: 650 NITQAVSRDVLAACMPAIEAA------GYSIVLTVHDEIITE 685


>gi|47934656|gb|AAT39766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 29/215 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGEK-------FNLS 624
           E  G   D  +  ++  +    +  +E  + ++            +G++       FN  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +Q+ D L  K        T TG+ K   + LEQ    + P    +LE+  LSK +   
Sbjct: 61  SRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNA--NIPEAALVLEYLTLSK-RIGM 116

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
             S  + +     R+H   +    +TGR+    PN+  IP ++      R  F      K
Sbjct: 117 VRSWLDAVGDDG-RIHGRVNTCGAITGRMTHSSPNMAQIPSES----LYRSCFTVADGNK 171

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           L+  D S +ELR+LAH            +  DIH 
Sbjct: 172 LVGIDASGLELRMLAHYMDDPEYTDPILHG-DIHT 205


>gi|47934782|gb|AAT39829.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934784|gb|AAT39830.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934796|gb|AAT39836.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934804|gb|AAT39840.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934820|gb|AAT39848.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 27/204 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPL 767
           KLI  D S +ELR+LAH  +    
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERY 197


>gi|229472543|gb|ACQ72786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F     +  + AD S +ELR L H        +  +     DIH  +A EI+G 
Sbjct: 10  HEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +++A     +   R      G   
Sbjct: 69  D--------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRSRIMADLDGFAA 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLWL 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ L++  +    +  +HDE
Sbjct: 169 LRSYELLDEAGIDYFPMAFVHDE 191


>gi|148807536|gb|ABR13571.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K L  + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVLPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDIPEAKLIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|47934626|gb|AAT39751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 200

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 27/204 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPL 767
           KLI  D S +ELR+LAH  +    
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERY 197


>gi|325272837|ref|ZP_08139174.1| phage exonuclease, putative [Pseudomonas sp. TJI-51]
 gi|324102042|gb|EGB99551.1| phage exonuclease, putative [Pseudomonas sp. TJI-51]
          Length = 198

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 23/183 (12%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103
           M+  L+  +  +       ++F    V +R  + P YK NR K  +      PL+R    
Sbjct: 1   MVQNLIDKTGADE----ALLVF-SDKVNWRKTVLPTYKHNRNKTVQ------PLLRAHLT 49

Query: 104 AF---GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
           A+     P++     E DD+         K G  + + S DKD   +       Y+   +
Sbjct: 50  AWAQETFPSVTKPTLEGDDVCGILLTRTRKFGEEIVVASIDKDFKTVPGHH---YNFNTD 106

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
              ++      +          Q L GD+ D   G PGIG   A  LL +    E ++  
Sbjct: 107 TFFEVTEEEADY------WHLYQTLMGDTTDGYTGCPGIGPVAAKRLLDKSPTWETVVAA 160

Query: 221 ASR 223
             +
Sbjct: 161 FDK 163


>gi|47934790|gb|AAT39833.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 27/204 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVPAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPL 767
           KLI  D S +ELR+LAH  +    
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERY 197


>gi|229472599|gb|ACQ72814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F     +  + AD S +ELR L H        +  +     DIH  +A EI+G 
Sbjct: 10  HEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L      P+++A     +   R      G   
Sbjct: 69  D--------RKSGKGVTYCLIYGGGDSKLGLTAGAPKAQAVKKGKEIRSRIMADLDGFAA 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLWL 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ L++  +    +  +HDE
Sbjct: 169 LRSYELLDEAGIDYFPMAFVHDE 191


>gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82]
          Length = 975

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 138/400 (34%), Gaps = 61/400 (15%)

Query: 460 EHFLKIGHNIKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              L   HN  +D+ VL     R    +  + D M+ +    +      +  + +     
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQAL---AHGLPGSLGELCEILGVP 121

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERL- 572
             K   K  K+ I +      +  +     S    + W        L +E +  VY+RL 
Sbjct: 122 QDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLP 181

Query: 573 -------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
                  +  +     Q+   G+ +D  L +     + +    L +   +++  +   ++
Sbjct: 182 KWNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAAT 241

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW----RQLSKIK 681
            +   D L   +    G +    Q  T      +    D  +   + E     +Q S   
Sbjct: 242 QR---DALIKHIVESYGVELPDMQRST-----LERRIADPDLPSAVKELLAIRQQASTTS 293

Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI-------- 733
           ++   +L   ++   +   T     ++ TGR A      QN+P  +   ++I        
Sbjct: 294 TSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALK 353

Query: 734 -------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN- 773
                              R   I+P  KKL+ +D S IE R+LA +A        F   
Sbjct: 354 AGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREY 413

Query: 774 ----SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809
                 D++++  A+ +G+ +E+V+   R+  K +  + I
Sbjct: 414 DAGTGPDLYKLAYAKAYGIEVERVTKDQRQIGKVLELACI 453



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 95/328 (28%), Gaps = 70/328 (21%)

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           + +     + + I K T RV +  S   T+T      +       + T        A   
Sbjct: 664 LMTQSWKWIASTITKATNRVISSSSPKQTITATEEKSQ---TCKNVSTSWSDVYDIAHAG 720

Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVS 794
           P  +  I  D   +    + H          F       SLD+  +  A +  +  + + 
Sbjct: 721 PRNRFTIKTDSGHL----IVHNCGYGGGVSAFITFALVYSLDLDELANAALPNIPRDVI- 775

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY---IEKTKN 851
               R AK+  +  +   S + L+ ++ I           +    P   ++   +E+T  
Sbjct: 776 ----REAKSWYYESVKRKSTYGLSERVFIACDSLKRL---WRRAHPATCDFWYELERTVR 828

Query: 852 FVRQN-------GYV---ETIFGRRIHYDEIN----------------------SPKSSI 879
                       GY+         RI                            S K   
Sbjct: 829 TAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQR 888

Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE---E 936
                   +    Q +A D+    M  +  +         ++L +HDE++ E P+     
Sbjct: 889 LKTYGGKLVENVTQAAARDVLAGNMPLIEDA------GYSIVLTVHDEIISEAPDSPDYS 942

Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKV 964
               SQ++      A +P     +PL  
Sbjct: 943 AEHVSQLL------ATVPDWATSIPLNA 964


>gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407]
          Length = 598

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 81/495 (16%), Positives = 156/495 (31%), Gaps = 128/495 (25%)

Query: 560 LIVEKLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
           L +E +  VY+RL        +  +     Q+   G+ +D +L +     + +    L +
Sbjct: 78  LDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAK 137

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671
              +++  +   ++ +   D L   +    G +    Q  T  + +   +   + + + +
Sbjct: 138 RTQEMTDGEVQAATQR---DALIKHIVESYGVELPDMQRSTLERRIADPDLP-SAVKELL 193

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
               Q S   ++   +L   ++   +   T     ++ TGR A      QN+P  +   +
Sbjct: 194 AIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQE 253

Query: 732 KI---------------------------RRAFISPPTKKLISADYSQIELRILAHIAKI 764
           +I                           R   I+P  KKL+ +D S IE R+LA +A  
Sbjct: 254 QIDEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGE 313

Query: 765 TPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHAKT--------------IN 805
                 F         D++++  A+ F +  + V   MR+  K               I 
Sbjct: 314 EWKLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFIT 373

Query: 806 FSIIYGISPFRLATQL--RIPRS---EAADYIKR------------------------YF 836
           F+++YG+    LA      IPR    EA  +                           + 
Sbjct: 374 FALVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVFIACDSLKRLWR 433

Query: 837 HRFPGIHEY---IEKTKNFVRQN-------GYV---ETIFGRRIHYDEIN---------- 873
              P   ++   +E T              GY+         RI                
Sbjct: 434 RAHPATCDFWYELECTVRTAIATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIE 493

Query: 874 ------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
                       S K           +    Q +A D+    M  +  +         ++
Sbjct: 494 QGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDA------GYSIV 547

Query: 922 LQIHDELVFEVPEEE 936
           L +HDE++ E P+ E
Sbjct: 548 LTVHDEVITESPDTE 562


>gi|262342233|gb|ACY54627.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 167

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 83/191 (43%), Gaps = 30/191 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P       + R  FI  P + ++ AD + IELR+L+H          ++N    
Sbjct: 1   PNLAQVPSD----HRFRELFIPTPGQVMVGADLAGIELRMLSHF------LARYDNGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSQAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
            + Y     G+ + +E  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RQAYIEAIDGLDKLLEAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRR 902
           +QG++A + +R
Sbjct: 157 LQGNSAILAKR 167


>gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1]
 gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1]
          Length = 1062

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 155/492 (31%), Gaps = 93/492 (18%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           ++          T +          +      +   T   + T  ID     + D T   
Sbjct: 1   MKDFERLFLDTETFSG----VDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESP 56

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMR--GFEDIMLMSYVLDSGR 500
            + +E+   L++    +  + + + + +D+LV+  ++GI +     ED M+M++      
Sbjct: 57  KMPRELRKALRQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAF------ 110

Query: 501 SSHDIA---SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             H +     +  + L     E  K +     I +      + + I       +      
Sbjct: 111 -RHALPGSLDMQCQVLGVD-AEHAKDKAGKALIKRFCKPTPKTYKIRR--YTRETHPEEW 166

Query: 558 PK------LIVEKLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            K      L +  +  VY R+        +  ++ +   +   G  +D DL       + 
Sbjct: 167 AKFLRYAALDIIAMREVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQ 226

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
            +   L+E  ++  G K   +      D L   L+  + A T     K+T  DL +    
Sbjct: 227 AHKEELKEEAWERFGGKLTGN------DFL-PILRDIAPAFTIHNAQKSTLNDLLEDPDF 279

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
            +     I      S   ST  + L N ++   +R        +  T R A      QN+
Sbjct: 280 PDEGKALIEMRLGASSTASTKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNL 339

Query: 724 PIKTDLGQKI------------------------------------------------RR 735
             + +                                                     R 
Sbjct: 340 -ARGEYSDDHEGKIKRREGESDVSFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRG 398

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-- 793
             I    KK + ADYS +E R LA +A       VF+   DI+   A ++FG++ + +  
Sbjct: 399 CIIPAKGKKFVVADYSNVEGRGLAWVAGEKTALMVFKAGRDIYCETAGKMFGLDPDYIKA 458

Query: 794 -SPQMRRHAKTI 804
               +R+  K  
Sbjct: 459 NRKDLRQIGKAC 470



 Score = 45.0 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 839  FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
            +PGI   +    +     G   T    +   +   + +   +           +Q    D
Sbjct: 938  YPGIALSVTTEIDE--DTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRD 995

Query: 899  ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958
            I   +M  V  +        +++L +HDEL+ EVP+ +    ++ +   M    LP    
Sbjct: 996  ILAWSMPGVEAA------GYEIVLSVHDELITEVPDTD-DYTTEELCALM--CDLPIWAK 1046

Query: 959  RVPLKVN 965
              PL   
Sbjct: 1047 GFPLAAE 1053


>gi|47934654|gb|AAT39765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 29/215 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGEK-------FNLS 624
           E  G   D  +  ++  +    +  +E  + ++            +G++       FN  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +Q+ D L  K        T TG+ K   + LEQ    + P    +LE+  LSK +   
Sbjct: 61  SRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNA--NIPEAALVLEYLTLSK-RIGM 116

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
             S  + +     R+H   +    +TGR+    PN+  IP ++      R  F      K
Sbjct: 117 VRSWLDAVGDDG-RIHGRVNTCGAITGRMTHSSPNMAQIPSES----LYRSCFTVADGNK 171

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           L+  D S +ELR+LAH         +  +  DIH 
Sbjct: 172 LVGIDASGLELRMLAHYIDDPEYTDLILHG-DIHT 205


>gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53]
 gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53]
          Length = 726

 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 103/697 (14%), Positives = 196/697 (28%), Gaps = 190/697 (27%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D     P+ IA       +     +    +        D T   T+ +E+ + L     N
Sbjct: 14  DLETYSPVPIAHGVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALH----N 69

Query: 460 EHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIM---LMSYVLDSGRSSHDIASIAQKWLS 514
              L   HN  +D+ VL   GIS  +  + D M   L   +   G     + ++ +    
Sbjct: 70  PAVLLYFHNSHFDRTVLRHCGISIPLERWRDSMAQALAHAL--PGA----LGTLCELLRV 123

Query: 515 YTRKEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
              +   K  K  + +             A  +++       +   +  V  +  V +RL
Sbjct: 124 PVEQAKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRL 183

Query: 573 --------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
                   +  +  +   +   G+ +D DL +     + +   +L E   DL+       
Sbjct: 184 PSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAG----- 238

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII-----KNILEWRQLSK 679
               +      +        T  G      Q      C D+P++     + +   RQ S 
Sbjct: 239 ----VVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQAST 294

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI------ 733
             +    +L N  ++  +   T     ++ TGR A       N+P  T   + I      
Sbjct: 295 TSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDA 354

Query: 734 ---------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF- 771
                                R   I+P  KKL+ AD S IE R+LA +A  TP    F 
Sbjct: 355 MKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFG 414

Query: 772 ---------------------------------------ENSLDIHRMVAAEIFGVNIEK 792
                                                      DI++   A  FG+  + 
Sbjct: 415 EFDTCQGVDGTWHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQA 474

Query: 793 VSPQMRRHAKTINFSI--------------IYGISPFRLATQLRIPRSEAAD-------- 830
           V+ Q R+  K    ++              +Y I    +A Q  +P     +        
Sbjct: 475 VTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQEATELLEWT 534

Query: 831 --------------------YIKRYFHRFPGIHEYIEKTK----------NFVRQNGYVE 860
                               + + + +  P I  + +  +                  + 
Sbjct: 535 KANHRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHTCCGIT 594

Query: 861 TIFGR---RIHYDEIN-----------------------SPKSSIRNINERAAINAPIQG 894
             + R   R+                             + K +         +    Q 
Sbjct: 595 VQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQA 654

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            + D+    M ++  +         ++L +HDE++ E
Sbjct: 655 VSRDVLAACMPAIEAA------GYSIVLTVHDEIITE 685


>gi|229472183|gb|ACQ72606.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472275|gb|ACQ72652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472399|gb|ACQ72714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 84/194 (43%), Gaps = 30/194 (15%)

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNL  +P  +    + R  F+  P + ++ AD + IELR+L+H          ++     
Sbjct: 1   PNLAQVPSDS----RFRELFLPSPGQIMVGADLAGIELRMLSHF------LAKYDQGRYA 50

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP------RSEAADY 831
             ++  +I  VN +K+    R+  KT+ ++ +YG    ++             + +  + 
Sbjct: 51  DILLNGDIHQVNADKIGI-SRKLVKTVTYAFLYGAGDEKIGHSYDKQLSSSAAKKKGKEI 109

Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
              Y     G+ + ++  K    + G+++ + GR+I  D            +   A+N  
Sbjct: 110 RTAYVDAIDGLDKLLDAIKK-ASERGFIKALDGRKIIVD------------SPHKALNYC 156

Query: 892 IQGSAADITRRAMI 905
           +QG++A + +R M+
Sbjct: 157 LQGNSAILAKRWMV 170


>gi|47934824|gb|AAT39850.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 27/204 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQVTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPL 767
           KLI  D S +ELR+LAH  +    
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERY 197


>gi|47934650|gb|AAT39763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 29/215 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGEK-------FNLS 624
           E  G   D  +  ++  +    +  +E  + ++            +G++       FN  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +Q+ D L  K        T TG+ K   + LEQ    + P    +LE+  LSK +   
Sbjct: 61  SRQQVADRLTAK-DAVWKDITPTGKPKVDEKSLEQNA--NIPEAALVLEYLTLSK-RIGM 116

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
             S  + +     R+H   +    +TGR+    PN+  IP ++      R  F      K
Sbjct: 117 VRSWLDAVGDDG-RIHGRVNTCGAITGRMTHSSPNMAQIPSES----LYRSCFTVADGNK 171

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           L+  D S +ELR+LAH         +  +  DIH 
Sbjct: 172 LVGIDASGLELRMLAHYMDDPEYTDLILHG-DIHT 205


>gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
 gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 726

 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 103/697 (14%), Positives = 196/697 (28%), Gaps = 190/697 (27%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D     P+ IA       +     +    +        D T   T+ +E+ + L     N
Sbjct: 14  DLETYSPVPIAHGVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALH----N 69

Query: 460 EHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIM---LMSYVLDSGRSSHDIASIAQKWLS 514
              L   HN  +D+ VL   GIS  +  + D M   L   +   G     + ++ +    
Sbjct: 70  PAVLLYFHNSHFDRTVLRHCGISIPLERWRDSMAQALAHAL--PGA----LGTLCELLRV 123

Query: 515 YTRKEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
              +   K  K  + +             A  +++       +   +  V  +  V +RL
Sbjct: 124 PVEQAKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRL 183

Query: 573 --------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
                   +  +  +   +   G+ +D DL +     + +   +L E   DL+       
Sbjct: 184 PSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAG----- 238

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII-----KNILEWRQLSK 679
               +      +        T  G      Q      C D+P++     + +   RQ S 
Sbjct: 239 ----VVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQAST 294

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI------ 733
             +    +L N  ++  +   T     ++ TGR A       N+P  T   + I      
Sbjct: 295 TSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDA 354

Query: 734 ---------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF- 771
                                R   I+P  KKL+ AD S IE R+LA +A  TP    F 
Sbjct: 355 MKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFG 414

Query: 772 ---------------------------------------ENSLDIHRMVAAEIFGVNIEK 792
                                                      DI++   A  FG+  + 
Sbjct: 415 EFDTCQGVDGTWHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQA 474

Query: 793 VSPQMRRHAKTINFSI--------------IYGISPFRLATQLRIPRSEAAD-------- 830
           V+ Q R+  K    ++              +Y I    +A Q  +P     +        
Sbjct: 475 VTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQEATELLEWT 534

Query: 831 --------------------YIKRYFHRFPGIHEYIEKTK----------NFVRQNGYVE 860
                               + + + +  P I  + +  +                  + 
Sbjct: 535 KANHRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHTCCGIT 594

Query: 861 TIFGR---RIHYDEIN-----------------------SPKSSIRNINERAAINAPIQG 894
             + R   R+                             + K +         +    Q 
Sbjct: 595 VQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQA 654

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            + D+    M ++  +         ++L +HDE++ E
Sbjct: 655 VSRDVLAACMPAIEAA------GYSIVLTVHDEIITE 685


>gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781]
 gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781]
          Length = 655

 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 74/531 (13%), Positives = 162/531 (30%), Gaps = 124/531 (23%)

Query: 536 SQVQEHAIENSNVILQLWL---LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           ++  ++A+ +++ ++ +W     L P++  E        +D        ++   GI  D 
Sbjct: 158 ARTYKYALIDTDAMVGVWENTVPLPPRMQAE------FEMDM-------RINHRGIGTDV 204

Query: 593 DLLKQVSA-EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
           +  + +   +         E  Y   G    ++   ++ +   T L        +    K
Sbjct: 205 EAAQAMEDLKAFAEAQLDYEMAYLTDGGILAVTEVAKIKEYAAT-LGEDMDDAGRETLKK 263

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
             A+D    +     +I+  L+  +  K  +     L  H+     R+         ++G
Sbjct: 264 IAARDNLPDSLRQ--LIELRLDASRAPKKSAA---ILRAHVGG---RLQHHTIYHGALSG 315

Query: 712 RLASLEPNLQNI--------PIKTDLGQKIRRAFI------------------------- 738
           R  +                  KT   + I  A +                         
Sbjct: 316 RSTARGAGGAQTLNTARPRPGKKTADCEAILDACLRGDRAYLSSPEVGPILAALADAQRQ 375

Query: 739 ----SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
               + P   L+ AD S IE R+   +A   P  + FE  +D +++ A +I+ +  + V+
Sbjct: 376 LFRATKPGHVLVGADLSGIEARVAPWLANDVPKLEAFEKGIDGYKLAAMDIYSIEYDAVT 435

Query: 795 PQMRRHAKTI-----NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849
              R+  K               +       + +P  + ++ +  +    P    +    
Sbjct: 436 KDQRQVGKAADLALGFGGGDGAFASMAANYGVHLPPEQVSEIVYNWRAGRPAFERWWSLC 495

Query: 850 --------------------KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
                               +N   Q  +V+     R+H     +       ++     N
Sbjct: 496 EYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEPGAN 555

Query: 890 API-----------------------QGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
            PI                       QG A D+    ++ V +         +++  ++D
Sbjct: 556 VPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-------EEIVHHVYD 608

Query: 927 ELVFEVPEEEITTASQIIVHSM--EKACLPKINLRVPLKVNIKVSNNWQEE 975
           E + EV  E      + +V  M   +A  P +    PL         W+++
Sbjct: 609 EALLEVLAELAALREKQLVERMCRGEAWCPGL----PLGAEGWHGLRWRKD 655


>gi|229472283|gb|ACQ72656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472335|gb|ACQ72682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F     +  + AD S +ELR L H        +  +     DIH  +A EI+G 
Sbjct: 10  HEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L      P+++A     +   R      G   
Sbjct: 69  D--------RKSGKGVTYCLIYGGGDSKLGLTAGAPKAQAVKKGKEIRSRIMADLDGFAA 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLWL 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ L++  +    +  IHDE
Sbjct: 169 LRSYELLDEAGIDYFPMAFIHDE 191


>gi|229472581|gb|ACQ72805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F     +  + AD S +ELR L H        +  +     DIH  +A EI+G 
Sbjct: 10  HEYRELFHPGANRPQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +++A     +   R      G   
Sbjct: 69  D--------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRSRIMANLDGFAA 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLWL 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ L++  +    +  IHDE
Sbjct: 169 LRSYELLDEAGIDYFPMAFIHDE 191


>gi|322786066|gb|EFZ12677.1| hypothetical protein SINV_07179 [Solenopsis invicta]
          Length = 136

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 26/132 (19%)

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED------------- 913
           +++  +           ER A+N  +QGSAADI ++AMIS+   +               
Sbjct: 5   LYFALLLGTLFMPMPQTERQAVNTKVQGSAADIVKKAMISIEDKIRSYFPDSTVIFPEVH 64

Query: 914 ---------HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964
                     +    ++LQ+HDEL++EV   ++   + II  SME  C     L VPL V
Sbjct: 65  TTRKLRSNLQQRGGYLVLQLHDELLYEVNLVDLKQVAVIIKESMENVC----QLSVPLPV 120

Query: 965 NIKVSNNWQEEN 976
            ++V   W + N
Sbjct: 121 KVRVGPAWGDLN 132


>gi|47934792|gb|AAT39834.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934822|gb|AAT39849.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 27/204 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPL 767
           KLI  D S +ELR+LAH  +    
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERY 197


>gi|262342193|gb|ACY54607.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S ++LR L H        +  E   + DIH  +A E++G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLKLRCLGHYLSRYDGGKFAEEVANGDIHTALA-EVYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +I G    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLICGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           I  H+ L++  +    L  IHDE
Sbjct: 169 IRTHELLQEAGIDYYPLAFIHDE 191


>gi|225388910|ref|ZP_03758634.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
 gi|225045019|gb|EEG55265.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
          Length = 67

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 44/66 (66%)

Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +F + +++V+P  RR+AK +NF I+YGIS F L+  L I R EA +YI +YF  +PG+  
Sbjct: 1   MFHIPLDQVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEAVEYINKYFETYPGVKT 60

Query: 845 YIEKTK 850
           +++   
Sbjct: 61  FLDGLV 66


>gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 102/705 (14%), Positives = 195/705 (27%), Gaps = 206/705 (29%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D     P+ IA       +     +    +        D T   T+ +E+ + L     N
Sbjct: 14  DLETYSPVPIAHGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH----N 69

Query: 460 EHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIM---LMSYVLDSGRSSHDIASIAQKWLS 514
              L   HN  +D+ VL   GI+  +  + D M   L   +   G     + ++ +    
Sbjct: 70  PAVLLYFHNSHFDRTVLRHCGINIPLERWRDSMAQALAHAL--PGA----LGTLCELLRV 123

Query: 515 YTRKEILKSRKSSIPID------------------KISDSQVQEHAIENSNVILQLWLLL 556
              +   K  K  + +                       +Q  ++A  +   +  +   L
Sbjct: 124 PVEQAKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRL 183

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
                     H Y   +  +  +   +   G+ +D DL +     + +   +L E   DL
Sbjct: 184 --------PSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDL 235

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII-----KNI 671
           +           +      +        T+ G      Q      C D+P++     + +
Sbjct: 236 TAG---------VVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELL 286

Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
              RQ S   +    +L N  +   +   T     ++ TGR A       N+P  T   +
Sbjct: 287 SIRRQASTTSTAKYQALLNCTSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQE 346

Query: 732 KI---------------------------RRAFISPPTKKLISADYSQIELRILAHIAKI 764
            I                           R   I+P  KKL+ AD S IE R+LA +A  
Sbjct: 347 AITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGE 406

Query: 765 TPLYQVF----------------------------------------ENSLDIHRMVAAE 784
           TP    F                                            DI++   A 
Sbjct: 407 TPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAH 466

Query: 785 IFGVNIEKVSPQMRRHAKTINFSI--------------IYGISPFRLATQLRIPRSEAAD 830
            FG+  + V+ Q R+  K    ++              +Y I    +A Q  +P     +
Sbjct: 467 SFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQE 526

Query: 831 ----------------------------YIKRYFHRFPGIHEYIEKTK----------NF 852
                                       + + + +  P I  + +  +            
Sbjct: 527 ATELLEWTKANHRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPET 586

Query: 853 VRQNGYVETIFGR---RIHYDEIN-----------------------SPKSSIRNINERA 886
                 +   + R   R+                             + K +        
Sbjct: 587 AHTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGK 646

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            +    Q  + D+    M ++  +         ++L +HDE++ E
Sbjct: 647 LVENITQAVSRDVLAACMPAIEAA------GYAIVLTVHDEIITE 685


>gi|167521656|ref|XP_001745166.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776124|gb|EDQ89744.1| predicted protein [Monosiga brevicollis MX1]
          Length = 882

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 101/309 (32%), Gaps = 52/309 (16%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           ++    +        T+T R         + P    +G +++    +PP  KL+ AD   
Sbjct: 541 DEPIGAIIPMVLPFGTVTRRAVEKTWMTASNPKPQRIGSELKAMIQAPPGYKLVGADVDS 600

Query: 753 IELRILAHIA----KITPLYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I + I                        +  D+H M A +I G+N ++       
Sbjct: 601 QELWIASVIGDQRLGREHGATAMGWMTLQGTKNDGTDMHSMTA-KILGINRDE------- 652

Query: 800 HAKTINFSIIYGIS---PFRLATQLRIP---RSEAADYIKRYFHR------------FPG 841
            AK  N+  IYG        L  +       R   A   + Y               F G
Sbjct: 653 -AKIFNYGRIYGAGKAFAASLLQKFNPTITEREAQAKAEELYLETKGKRIAGARGGYFDG 711

Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR------NINERAAINAPIQGS 895
              ++  +   +       T        D +       R      +    + +N  +Q S
Sbjct: 712 SESHMFTSLEDIATAATPRTPVLGFQITDGLLPRNFMHRFLCVSMSQYMTSRVNWVVQSS 771

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII------VHSME 949
           A D     + S+   +  + L  ++ + IHDE+ + V +E+I   +  +      V SM 
Sbjct: 772 AVDFLHLMITSMDHFIRTYGLRARLCITIHDEIRYIVADEDIARVAYALHLTNLYVRSMF 831

Query: 950 KACLPKINL 958
            A L   +L
Sbjct: 832 AARLGMYDL 840


>gi|316934307|ref|YP_004109289.1| 5'-3' exonuclease [Rhodopseudomonas palustris DX-1]
 gi|315602021|gb|ADU44556.1| 5'-3' exonuclease, SAM-fold domain [Rhodopseudomonas palustris
           DX-1]
          Length = 238

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 87/212 (41%), Gaps = 25/212 (11%)

Query: 37  AIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP 96
           A +G    + +L      E +            V FR  I P YKANR    + L     
Sbjct: 29  AFSGVARAVNRLKARFETEDVLLCI-----SAGVNFRYSIDPTYKANRKGTRKPLAYNEV 83

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
           L R        P+ E  G EADDI+  +     +E  A  I S DKD+  +      L+D
Sbjct: 84  LKR---TKDIWPSFEFPGLEADDILGIF---GSREPDAAIICSADKDMKTIP---CTLWD 134

Query: 157 TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
             K +KID            +   C Q L GD+ D  PG+PG+G K A  +L   G +  
Sbjct: 135 GSKLQKIDRA--------TADWWFCYQTLVGDTADGYPGVPGVGPKKAQAILGPVGKM-P 185

Query: 217 ILINASRIKQKKRRENILE--YAETARLSRKL 246
           I +   +++    +  + E    + ARL+R L
Sbjct: 186 IAVLWDKVQDAYAKFGLDEADAVKQARLARIL 217


>gi|229472345|gb|ACQ72687.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F     +  + AD S +ELR L H        +  +     DIH  +A EI+G 
Sbjct: 10  HEYRELFHPGANRSQVGADASGLELRRLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +++A     +   R      G   
Sbjct: 69  D--------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRSRIMADLDGFAA 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLWL 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ L++  +    +  +HDE
Sbjct: 169 LRSYELLDEAGIDYFPMAFVHDE 191


>gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 726

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 103/694 (14%), Positives = 199/694 (28%), Gaps = 184/694 (26%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D     P+ IA       +     +    I        D T   T+ +E+ + L     N
Sbjct: 14  DLETYSPVPIAHGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALH----N 69

Query: 460 EHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
              L   HN  +D+ VL   GI   +  + D M  + +  S   +  + ++ +       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHCGIDIPLERWRDSMAQA-LAHSLPGA--LGTLCELLRVPVE 126

Query: 518 KEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL--- 572
           +   K  K  + +             A  +++       +   +  V  +  V +RL   
Sbjct: 127 QAKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSH 186

Query: 573 -----DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
                +  +  +   +   G+ +D DL +     + +   +L      L+G     ++ +
Sbjct: 187 NYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQR 246

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII-----KNILEWRQLSKIKS 682
              D L   L       T+ G      Q      C D+P++     + +   RQ S   +
Sbjct: 247 ---DALLHHL------STEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTST 297

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI--------- 733
               +L N  ++  +   T     ++ TGR A       N+P  T     I         
Sbjct: 298 AKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKA 357

Query: 734 ------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF---- 771
                             R   I+P  KKL+ AD S IE R+LA +A  TP    F    
Sbjct: 358 GCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFD 417

Query: 772 ------------------------------------ENSLDIHRMVAAEIFGVNIEKVSP 795
                                                   DI++   A  FG+  + V+ 
Sbjct: 418 TCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTK 477

Query: 796 QMRRHAKTINFSI--------------IYGISPFRLATQLRIPRSEAAD----------- 830
           + R+  K    ++              +Y I    +A Q  +P     +           
Sbjct: 478 EQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQEAVEALQWTKAN 537

Query: 831 -----------------YIKRYFHRFPGIHEYIEKTK----------NFVRQNGYVETIF 863
                            + + + +  P I  + +  +                  +   +
Sbjct: 538 QRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETAHTCCGITVQY 597

Query: 864 GR---RIHYDEIN-----------------------SPKSSIRNINERAAINAPIQGSAA 897
            R   R+                             + K +         +    Q  + 
Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           D+    M ++  +         ++L +HDE++ E
Sbjct: 658 DVLAACMPAIEAA------GYAIVLTVHDEMITE 685


>gi|148807502|gb|ABR13555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDIPEAKLIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|229472217|gb|ACQ72623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F     +  + AD S +ELR L H        +  +     DIH  +A EI+G 
Sbjct: 10  HEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L      P+++A     +   R      G   
Sbjct: 69  D--------RKSGKGVTYCLIYGGGDSKLGLTAGAPKAQAVKKGKEIRSRIMADLDGFAA 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAVIRKLWL 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ L++  +    +  +HDE
Sbjct: 169 LRSYELLDEAGIDYFPMAFVHDE 191


>gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 195/694 (28%), Gaps = 184/694 (26%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           D     P+ IA       +     +    +        D T   T+ +E+ + L     N
Sbjct: 14  DLETYSPVPIAHGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH----N 69

Query: 460 EHFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
              L   HN  +D+ VL   GI+  +  + D M  + +  S   +  + ++ +       
Sbjct: 70  PAVLLYFHNSHFDRTVLRHCGINIPLERWRDSMAQA-LAHSLPGA--LGTLCELLRVPVE 126

Query: 518 KEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL--- 572
           +   K  K  + +             A  +++       +   +  V  +  V +RL   
Sbjct: 127 QAKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSH 186

Query: 573 -----DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627
                +  +  +   +   G+ +D DL +     + +   +L E   DL+          
Sbjct: 187 NYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAG-------- 238

Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII-----KNILEWRQLSKIKS 682
            +      +        T+ G      Q      C D+P++     + +   RQ S   +
Sbjct: 239 -VVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTST 297

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI--------- 733
               +L N  +   +   T     ++ TGR A       N+P  T     I         
Sbjct: 298 AKYQALLNCTSGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKA 357

Query: 734 ------------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF---- 771
                             R   I+P  KKL+ AD S IE R+LA +A  TP    F    
Sbjct: 358 GCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFD 417

Query: 772 ------------------------------------ENSLDIHRMVAAEIFGVNIEKVSP 795
                                                   DI++   A  FG+  + V+ 
Sbjct: 418 TCQGVDGTWHSGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTK 477

Query: 796 QMRRHAKTINFSI--------------IYGISPFRLATQLRIPRSEAADYIK-------- 833
           Q R+  K    ++              +Y I    +A Q  +P       ++        
Sbjct: 478 QQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQQAMEALQWTKAN 537

Query: 834 --------------------RYFHRFPGIHEYIEKTK----------NFVRQNGYVETIF 863
                                + +  P I  + +  +                  +   +
Sbjct: 538 QRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHTCCGITVQY 597

Query: 864 GR---RIHYDEIN-----------------------SPKSSIRNINERAAINAPIQGSAA 897
            R   R+                             + K +         +    Q  + 
Sbjct: 598 SRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           D+    M ++  +         ++L +HDE++ E
Sbjct: 658 DVLAACMPAIEAA------GYAIVLTVHDEIITE 685


>gi|229472295|gb|ACQ72662.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 177

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 27/196 (13%)

Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGVNIEKVSP 795
                +  + AD S +ELR L H        +  +     DIH  +A EI+G +      
Sbjct: 3   CPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EIYGTD------ 55

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKTKN 851
             R+  K + + +IYG    +L       +++A     +   R      G        + 
Sbjct: 56  --RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGKEIRSRIMASLDGFAALNAAVQE 113

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
             + +G +E + GR I                  AA+N  +Q + A I +  ++  ++ L
Sbjct: 114 RAK-SGVLEGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLRLLRSYELL 161

Query: 912 EDHKLATKMLLQIHDE 927
           ++  +    +  +HDE
Sbjct: 162 DEAGIDYFPMAFVHDE 177


>gi|325849905|ref|ZP_08170944.1| conserved domain protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325479929|gb|EGC83012.1| conserved domain protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 83

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 1  MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
          M K+  + L+DGSS I+RAF+A P L+   DG+  N + GF  M ++ ++  + +    +
Sbjct: 1  MSKK--VMLIDGSSLIFRAFFALPNLTNA-DGVMTNGVYGFLTMYFRAVEEYKPD----Y 53

Query: 61 FAVIFDYPAV 70
            V FD    
Sbjct: 54 ILVAFDKKQK 63


>gi|47934646|gb|AAT39761.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 29/215 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDL------------SGEK-------FNLS 624
           E  G   D  +  ++  +    +  +E  + ++            +G++       FN  
Sbjct: 1   ERNGSAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S +Q+ D L  K        T TG+ K   + LEQ    + P    +LE+  LSK +   
Sbjct: 61  SRQQVADRLTAK-GAVWKDITPTGKPKVDEKSLEQNA--NIPEAALVLEYLTLSK-RIGM 116

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744
             S  + +     R+H   +    +TGR+    PN+  IP ++      R  F      K
Sbjct: 117 VRSWLDAVGDDG-RIHGRVNTCGAITGRMTHSSPNMAQIPSES----LYRSCFTVADGNK 171

Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
           L+  D S +ELR+LAH         +  +  DIH 
Sbjct: 172 LVGIDASGLELRMLAHYMDDPEYTDLILHG-DIHT 205


>gi|47934624|gb|AAT39750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 27/204 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    P+L  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPSLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPL 767
           KLI  D S +ELR+LAH  +    
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERY 197


>gi|148807493|gb|ABR13551.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++QV+ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQVTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDIPEAKLIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807524|gb|ABR13565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDVPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|307249710|ref|ZP_07531689.1| hypothetical protein appser4_5130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858218|gb|EFM90295.1| hypothetical protein appser4_5130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 68

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           MI + K++       KM++Q+HDELVFEV EE I   SQ+I   MEKA    I L+VPL 
Sbjct: 1   MIGIDKAIRGDD-NIKMIMQVHDELVFEVKEELIEHYSQLIKAEMEKA----IQLKVPLI 55

Query: 964 VNIKVSNNWQEEN 976
             + V +NW E +
Sbjct: 56  AEVGVGDNWDEAH 68


>gi|148807548|gb|ABR13576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807526|gb|ABR13566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDVPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|167462371|ref|ZP_02327460.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase
           domains [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 573

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 112/367 (30%), Gaps = 28/367 (7%)

Query: 274 SFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
              + +    L  +    +D   A      +    T+ K       +     I   +   
Sbjct: 15  EAFERIGAMALTPKQRMQFDAALAAFRSGEIGSLQTDGKRWTKGDVLTAGARILQKRKEV 74

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
             ++         P    +          ++           +       L      +  
Sbjct: 75  EREKRISEVLASRPHNFHILTHDSELPAFVDRLRTECKRQMTEWAGKYDFLGVKSMTAGD 134

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI-------FIDLSVHTSQDSTGKNTLT 446
                +D++    I  +I      +        +       F  L+   +   +G     
Sbjct: 135 FEGTGVDSYIDLSIGFSIWLPLLGEGYYLPYGHVDMRGVEGFEFLNDTFAYKDSGPQLTR 194

Query: 447 KEILSYLKKFFENEHFLKIGH--NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSH 503
            ++L  ++ +       K  H  + +YD  V    G  +RG   D +   ++L+     +
Sbjct: 195 SKVLDAIRPYLAQPTHGKTFHMGSARYDLHVARNDGYEIRGCVWDTLDAMHLLNEHEEKY 254

Query: 504 DIASIAQKWLSYTRK-------EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +  I +K+  Y          E +   +S  P    S   V  +AI++   +L  W L 
Sbjct: 255 GLKKIVEKYGKYFDIPGPIYTFEDMFGNRSPAPF---SVELVGIYAIKD---VLYGWKLF 308

Query: 557 RPKLIVEK-----LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
             ++ + +     LL  Y ++D  + +V   M   G +ID D LK +  E    L   + 
Sbjct: 309 EWQVEMMRKSPGCLLDCYAKIDSKLPEVDVFMARCGFEIDLDGLKALEEEFIPALEQAKH 368

Query: 612 NIYDLSG 618
           ++    G
Sbjct: 369 DVIKTYG 375



 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQW 650
           ++ L+++ AE  K + + EE+       +F++++   L  +++  L       K   G+ 
Sbjct: 436 KEKLRKLYAE--KPVPADEEHAPRYV-TEFSITNGNHLKYLIYDHLGIIDVTPKFYRGKE 492

Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           ++TA D+ +        +K +       K+ +TY   +P+ +     R+HT +    T T
Sbjct: 493 RSTASDVMEEYYETETALKPLATVATYEKLLNTYIRKIPHALEADG-RLHTEFKAGGTRT 551

Query: 711 GRLASLEPNLQNIPIKTDL 729
           GR +S     + I I  + 
Sbjct: 552 GRYSSSGYEGRPIDILDEF 570


>gi|42562521|ref|NP_174698.2| 5'-3' exonuclease family protein [Arabidopsis thaliana]
 gi|332193585|gb|AEE31706.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 264

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP--LVRLATQAFGIPAIEIQGFEAD 118
            AVI        R E+ P YKA+R         + P   V    +   +P + I+G EAD
Sbjct: 113 IAVIDGEEGNQRRRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPVVRIEGHEAD 172

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGI 174
           D++AT    A + G+   I S DKD  QL+S    +        +     ++H   ++  
Sbjct: 173 DVVATLMEQAVQRGYRAVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNC 232

Query: 175 PPE 177
            P+
Sbjct: 233 DPQ 235


>gi|148807562|gb|ABR13583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDVPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
              S +TGR+    PNL  +P +    G++ R  +  P   KL+  D S +ELR+LAH  
Sbjct: 123 ITNSAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLVGIDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807500|gb|ABR13554.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807556|gb|ABR13580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDVPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KL+  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLVGIDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807507|gb|ABR13557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +TK G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTKKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|47934794|gb|AAT39835.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 11  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-VGVGVKFKQ 69

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 70  KTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 123

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 124 ITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYM 183

Query: 763 KITPL 767
           +    
Sbjct: 184 RDERY 188


>gi|310005686|gb|ADP00074.1| exonuclease [Cyanophage 9515-10a]
          Length = 246

 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 103/274 (37%), Gaps = 37/274 (13%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           M +   + L+D     Y+A  A        D + V A + F N+L    +  +K + A  
Sbjct: 1   MVRSTLMLLIDTDFLAYKAAQACEEGIDFGDDVIV-AQSNFSNVLKIFERELKKVTTA-- 57

Query: 61  FAVIFD-------YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
              +FD            FR +I  DYK +R +   +   +  LV      +    +   
Sbjct: 58  ---MFDDEFILYFSSPQNFRKKISADYKGHRNRRKPLGYKR--LVNHCKDKYRF--VLRD 110

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
           G EADD +         +     I+S DKD+ Q+      L+D       D+E + K+ G
Sbjct: 111 GLEADDALGMDATKYPDK--ETIIVSPDKDMRQIPG---ILWDMKG----DVEEITKEDG 161

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                +   Q+L GD  D  PG PGIG K A  LL ++ N    +  A + +        
Sbjct: 162 DMWHLI---QSLAGDPTDGYPGCPGIGVKRATELLNKHKNKWEAICQAYKERGL------ 212

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
               + A L+ +L  +          +  IL   
Sbjct: 213 --SDDDALLNARLAKILQHTDYDYDRQEPILWTP 244


>gi|115608313|ref|XP_001179661.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
            purpuratus]
 gi|115610072|ref|XP_788319.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
            purpuratus]
          Length = 2412

 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 53/236 (22%)

Query: 408  AIAISTLDQKDD-TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF---- 462
             IA+    +     S + E    +     +      N    + LS ++   E E      
Sbjct: 2218 GIAVCWGGKDAYFVSLQKEITEGNADDTLAPPDNAPNLSVSDRLSKIRPVLEIEKLGRTA 2277

Query: 463  -----LKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
                  K+    K+   +L +  G  + G  ED  +  +++D G    ++ S+  ++   
Sbjct: 2278 KAKYHRKVVFGAKHQYKILSQACGCLLAGSLEDPKIAQWLIDPGSKEPNLQSLVTQYTPT 2337

Query: 516  TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
                                         ++             L+   LL ++ +++ P
Sbjct: 2338 -----------------------------DAY------------LLEGPLLFLFPQVEMP 2356

Query: 576  MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
             I  ++++E+ GI ID    +   A +   L  LEE  Y ++G  F+L+SP  +  
Sbjct: 2357 SIVTLARVELNGIGIDGAECETQKAVMQAKLKCLEEEAYKIAGHGFSLTSPDDVAQ 2412


>gi|47934812|gb|AAT39844.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 199

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 27/204 (13%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S K + + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKXIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPL 767
           KLI  D S +ELR+LAH  +    
Sbjct: 174 KLIGCDASGLELRMLAHYMRDERY 197


>gi|258567122|ref|XP_002584305.1| DNA polymerase gamma [Uncinocarpus reesii 1704]
 gi|237905751|gb|EEP80152.1| DNA polymerase gamma [Uncinocarpus reesii 1704]
          Length = 1140

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 122/391 (31%), Gaps = 48/391 (12%)

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTG 648
           +  D++++ S  +  +   +   +    G     +SP   G +  F   K  S       
Sbjct: 563 VQCDMMEEKSEALKSDTQHVYYKLPHKDGPDARCASPVAKGYLQYFEGGKLSSQFALAKE 622

Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708
             +  A     I+  D  I + I+ + +   ++    D +P + +     +        T
Sbjct: 623 ALEMNASCSYWISARDR-IARQIVVYDK--DVRRLSGDEIPQNRSSHLGFILPQIIPMGT 679

Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768
           +T R         +      +G +++    +PP    + AD    EL I A +       
Sbjct: 680 ITRRAVENTWLTASNAKANRVGSELKAMVKAPPGYAFVGADVDSEELWI-ASLVGDAQFQ 738

Query: 769 QVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-- 813
               N               D+H   A +I G+         R +AK  N+  IYG    
Sbjct: 739 IHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNNAKVFNYGRIYGAGLK 789

Query: 814 -PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI-------- 862
               L  Q    I   E        +    G     +         G  E+         
Sbjct: 790 FAATLLRQFNPSISEEETKLIASNLYRETKGTRTMRKMISESPFWRGGTESFVFNKLEEF 849

Query: 863 -FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
               R     + +        +   +     + IN  IQ S  D     ++S+   +   
Sbjct: 850 ADQERPRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLIVSMDFLIRRF 909

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            +  ++ + +HDE+ + V EE+   A+  + 
Sbjct: 910 NIDARLAISVHDEIRYLVKEEDKYRAAMALQ 940


>gi|148807554|gb|ABR13579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKGKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  + I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAEMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|229472567|gb|ACQ72798.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F     +  + AD S +ELR L H        +  +     DIH  +A EI G 
Sbjct: 10  HEYRELFHPGANRSQVGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTALA-EICGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +++A     +   R      G   
Sbjct: 69  D--------RKSGKGVTYCLIYGGGDSKLGLTAGASKAQAVKKGEEIRSRSMANLDGFAA 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAVQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLWL 168

Query: 905 ISVHKSLEDHKLATKMLLQIHDE 927
           +  ++ L++  +    +  IHDE
Sbjct: 169 LRSYELLDEAGIDYFPMAFIHDE 191


>gi|148807583|gb|ABR13592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGATIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|47934634|gb|AAT39755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 27/215 (12%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSL------------EENIYDLSGE-------KFNLS 624
           E  G  +D +    +  +I+  +  +            EE   + +G+       +FN+ 
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   +      KT+ G      +    +   D P  K I E+  L K ++  
Sbjct: 61  SRKQIAERL-VGVGVKFKQKTEKGAVIVNEKV---LEGIDIPEAKTIYEYLMLQK-RAAQ 115

Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTK 743
            DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  +  P   
Sbjct: 116 IDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGH 173

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778
           KLI    S +ELR+LAH  +              H
Sbjct: 174 KLIGCGASGLELRMLAHYMRDERYTNEILMRRHPH 208


>gi|148807489|gb|ABR13549.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   D    H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDPWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807571|gb|ABR13586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THRMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEEV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807539|gb|ABR13572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKNGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807532|gb|ABR13569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDVPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1]
 gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1]
 gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1]
 gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1]
          Length = 688

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/498 (15%), Positives = 159/498 (31%), Gaps = 77/498 (15%)

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
             +     + K E +    ++             +++   L+    +E+     HN  +D
Sbjct: 16  IQNGTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWALIDENVALCAHNSHFD 75

Query: 473 KLVLHR----YGISMRGFEDIML--MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           + VL      Y +++  + D M+  +++ L  G    D+  I    L     +       
Sbjct: 76  RTVLRHAMPDYPLALPRWRDTMVKALAHSL-PGALG-DLCDI----LKVPTDKAKDKAGK 129

Query: 527 SIPI---------DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV--YERLDKP 575
            + +          K+  +  + H  E +  +    L +    ++++ L    Y+  +  
Sbjct: 130 QLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLPAWNYQGTELA 189

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ--LGDIL 633
           +  +   +   G+ +D DL       + +    L     D++      ++ +   L  +L
Sbjct: 190 LWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAATQRDAMLRHVL 249

Query: 634 FT-KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692
               L  P   ++   +         ++        + +    Q S   ++   +L   +
Sbjct: 250 AAYGLDLPDMQQSTLERRIADPDLPAELR-------ELLGIRLQASTTSTSKYKTLAKGV 302

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI---------------KTDLGQK----- 732
           +   +   T     ++ TGR A      QN+P                K D         
Sbjct: 303 SSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLLFANV 362

Query: 733 -------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRM 780
                  IR   ++P  KKL+ AD S IE R++A +A        F         D++++
Sbjct: 363 MELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPDLYKL 422

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL---ATQLRIPRSEAADYIKRYFH 837
             A+ F V+ + V    R+  K +   + Y          A    I     AD       
Sbjct: 423 AYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMAD------A 476

Query: 838 RFPGIHEYIEKTKNFVRQ 855
            +P I            Q
Sbjct: 477 AWPSIPA---DIIAEAEQ 491


>gi|148807497|gb|ABR13553.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807509|gb|ABR13558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807517|gb|ABR13562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807522|gb|ABR13564.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807550|gb|ABR13577.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807573|gb|ABR13587.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807587|gb|ABR13594.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807591|gb|ABR13595.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807593|gb|ABR13596.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807595|gb|ABR13597.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807552|gb|ABR13578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNERV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807585|gb|ABR13593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +GE       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGERLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K + E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMVYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807495|gb|ABR13552.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDIPEAKTIDEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  IP +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQIPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807601|gb|ABR13600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  + I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAEMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807513|gb|ABR13560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H+  +  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDIPGAKLIYEYLMLQK-RAAQIDSWLTHV--KDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S ++LR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLKLRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807558|gb|ABR13581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRLLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807560|gb|ABR13582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIANEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807597|gb|ABR13598.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIAEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4]
          Length = 773

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 69/209 (33%), Gaps = 41/209 (19%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            Q    D  I   + E   +     T       +L   ++   +   T     ++ TGR 
Sbjct: 45  LQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRW 104

Query: 714 ASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTKKLI 746
           A       N+P  T     I                           R   I+PP KKL+
Sbjct: 105 AGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLV 164

Query: 747 SADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            +D S IE R+LA +A        F         D++++  A  F +  E V+ + R+  
Sbjct: 165 ISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIG 224

Query: 802 KTINFSIIYGISP-----FRLATQLRIPR 825
           K +   + YG        F LA  L +  
Sbjct: 225 KVMELGLGYGGGVAAFLTFALAYGLDLDE 253



 Score = 39.3 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                  Q +A D+   +M  + K+        +++L +HDE++ E P+
Sbjct: 693 HNCENICQSAARDVLAYSMPPIEKA------GYEIVLTVHDEIISEAPD 735


>gi|162456960|ref|YP_001619327.1| pseudogene [Sorangium cellulosum 'So ce 56']
 gi|161167542|emb|CAN98847.1| pseudogene [Sorangium cellulosum 'So ce 56']
          Length = 101

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
             +M+L +HDEL FEVP E +  A   +  +ME        L VPL V++     W 
Sbjct: 11  GARMVLTVHDELAFEVPAEAVDEAKAKVREAMESV----FPLDVPLVVDVGHGPTWA 63


>gi|148807569|gb|ABR13585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLPKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|268572043|ref|XP_002641219.1| C. briggsae CBR-POLQ-1 protein [Caenorhabditis briggsae]
 gi|187032127|emb|CAP28706.1| CBR-POLQ-1 protein [Caenorhabditis briggsae AF16]
          Length = 631

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
             L+      V +M  +GI  D+   KQ   +  K +  LEE I+ L+  KFN++S  + 
Sbjct: 482 FDLEMDTCQAVLKMFYSGISFDRVACKQFIGDTRKRIEILEEQIWRLAHGKFNINSSNEA 541

Query: 630 GDILFTKLKF--PSGAKTKTGQWK-TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
            ++LF +L    P  +  K  Q    T + +     G + I++ IL +R +    +    
Sbjct: 542 SNVLFHRLGLVYPETSSCKIKQRHLPTNKQILNQMIGQHQIVEKILTYRHIQHTLTQCLL 601

Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721
            L N+  +   R+        T TGR+ +  PNLQ
Sbjct: 602 PLANYEKRIHCRME-----MCTATGRMLTSSPNLQ 631


>gi|310005798|gb|ADP00184.1| exonuclease [Cyanophage NATL2A-133]
          Length = 240

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 101/268 (37%), Gaps = 37/268 (13%)

Query: 7   LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           + L+D     Y+A  A        D + V A + F N+L    +  +K + A     +FD
Sbjct: 1   MLLIDTDFLAYKAAQACEEGIDFGDDVIV-AQSNFSNVLKIFERELKKVTTA-----MFD 54

Query: 67  -------YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
                       FR +I  DYK +R +   +   +  LV      +    +   G EADD
Sbjct: 55  DEFILYFSSPQNFRKKISADYKGHRNRRKPLGYKR--LVNHCKDKYRF--VLRDGLEADD 110

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            +         +     I+S DKD+ Q+      L+D       D+E + K+ G     +
Sbjct: 111 ALGMDATKYPDK--ETIIVSPDKDMRQIPG---VLWDMKG----DVEEITKEDGDMWHLI 161

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
              Q+L GD  D  PG PGIG K A  LL ++ N    +  A + +            + 
Sbjct: 162 ---QSLAGDPTDGYPGCPGIGVKRATELLNKHENKWEAICQAYKERGL--------SDDD 210

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDC 267
           A L+ +L  +          +  IL   
Sbjct: 211 ALLNARLAKILQHTDYDYDRQEPILWTP 238


>gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 240

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 50/217 (23%)

Query: 771 FENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL----ATQLRIP 824
           F+N  D++   A+ +FGV +EK  V+ ++R+  K    +  Y  S   L    A ++ + 
Sbjct: 1   FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLS 60

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFV------------------RQNG--YVETIFG 864
           + E    +  +    P I +      N                    +++G  ++    G
Sbjct: 61  KDELQPIVDAWRAANPNIVQLWHDVDNAATRAISTGSPVTLRNLGFEKKSGMLFINLPSG 120

Query: 865 RRI------------------HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           RR+                  ++ +  + K           +   +Q +A D+    +  
Sbjct: 121 RRLAYVKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITR 180

Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943
           +  +        ++++ IHDE+V + P     T + I
Sbjct: 181 IENA------GNRIVMHIHDEVVIDEPINSGITVADI 211


>gi|82231650|sp|Q5I4H3|FEN1_XIPMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|57639537|gb|AAW55636.1| flap endonuclease-1 [Xiphophorus maculatus]
 gi|57639539|gb|AAW55637.1| flap endonuclease-1 [Xiphophorus maculatus]
          Length = 380

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 91/278 (32%), Gaps = 50/278 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  DG   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QSEDGETTSHLMG---MFYRTIRMLENGIKPVY---VFDGKPPQLKSAELEKRGERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            +ML     L                        +      G+P IE    EA+   A  
Sbjct: 108 EKMLAKAQELGEQENIDKFSKRLVKVTKQHNDDCKKLLTLMGVPYIEAPC-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                 EG      + D D +   +     + T  E      ++     +++  G+  E+
Sbjct: 167 VK----EGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPVQEFHFNRILQDIGLTSEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  L G   D    I GIG K A  L++++G++E IL N    K     + + + A 
Sbjct: 223 FIDLCILLG--CDYCGTIKGIGPKRAIDLIRQHGSIEEILENIDTSKHPAPEDWLYKEAR 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
              L  ++V              L   + +   LI F+
Sbjct: 281 NLFLKPEVV--------DSSTVDLKWREPDEEALIQFM 310


>gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5]
          Length = 773

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 70/209 (33%), Gaps = 41/209 (19%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            Q    D  I  ++ E   +     T       +L   ++   +   T     ++ TGR 
Sbjct: 45  LQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRW 104

Query: 714 ASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTKKLI 746
           A       N+P  T     I                           R   I+PP KKL+
Sbjct: 105 AGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLV 164

Query: 747 SADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            +D S IE R+LA +A      + F         D++++  A  F +  E V+   R+  
Sbjct: 165 ISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIG 224

Query: 802 KTINFSIIYGISP-----FRLATQLRIPR 825
           K +   + YG        F LA  L +  
Sbjct: 225 KVMELGLGYGGGVAAFLTFALAYGLDLDE 253



 Score = 39.3 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                  Q +A D+   +M  + K+        +++L +HDE++ E P+
Sbjct: 693 HNCENICQSAARDVLAYSMPPIEKA------GYEIVLTVHDEIISEAPD 735


>gi|320583448|gb|EFW97661.1| DNA polymerase gamma [Pichia angusta DL-1]
          Length = 1141

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 103/309 (33%), Gaps = 61/309 (19%)

Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
            +I + +     + I+ +   +        T+T R         +   K+ LG +++   
Sbjct: 613 ERIMNQFVVYKKDAIDSKIGMIIPQIIPMGTITRRAVENTWLTASNAKKSRLGSELKAMI 672

Query: 738 ISPPTKKLISADYSQIELRILAHIA----KITPLYQVFE--------NSLDIHRMVAAEI 785
            SPP    + AD    EL + + +     KI     +             D+H   A +I
Sbjct: 673 QSPPGYCFVGADVDSEELWVASLVGDSVFKIHGGTAIGWMTLEGTKSEGTDLHSKTA-KI 731

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845
            G+         R  AK  N+  IYG                A   +K++          
Sbjct: 732 LGI--------SRNDAKVFNYGRIYGAG-----------VKFATSLLKKFNPALTEADAR 772

Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINS-----------------------------PK 876
              ++ +    G  +T+  R++ +    S                              K
Sbjct: 773 KTASELYAATKGQSQTVNKRKMWFGGSESIVFNRLETIAEQEHPKTPVLGAGITSALQKK 832

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           +   N    + IN  IQ S  D     ++S+   L+ +K+  ++ + +HDE+ + V +E+
Sbjct: 833 NLHSNTFLPSRINWAIQSSGVDYLHLLVVSMEYLLKRYKVDARLCITVHDEIRYIVKKEQ 892

Query: 937 ITTASQIIV 945
               + I+ 
Sbjct: 893 KYKCAMILQ 901


>gi|18640491|ref|NP_570332.1| exonuclease [Synechococcus phage P60]
 gi|18478721|gb|AAL73270.1| exonuclease [Synechococcus phage P60]
          Length = 243

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 82/212 (38%), Gaps = 34/212 (16%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCN----MLWKLLQNSRKESIAS 59
            L+D   F+YRA       +   D L        + G       +  + +++   +    
Sbjct: 6   LLIDADYFLYRA------CNTAEDELEFDFETTLVVGDFRKGQQIFRQSIKDFTTKFDTD 59

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAF-GIPAIEIQGFEAD 118
              + F   +  FR ++ P YK NR K            +L   A    P++   G EAD
Sbjct: 60  KVLLTF-TDSRNFRKDVEPTYKGNRVKRKP-----CGYKKLKNWAMKEWPSVMKPGLEAD 113

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D++         + F   +IS DKD+ Q+      +YD   E     E   +        
Sbjct: 114 DVMGILATNGSLDNF--VLISPDKDMAQIP---CRIYDLKHEYTQTPEKAHE-------- 160

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           ++ LQ LTGDS D   G PGIG K A  +L +
Sbjct: 161 LLYLQCLTGDSTDGYSGCPGIGPKRALAILGK 192


>gi|148807491|gb|ABR13550.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      + LE I     P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKVLEGIGI---PEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 69/209 (33%), Gaps = 41/209 (19%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            Q    D  I   + E   +     T       +L   ++   +   T     ++ TGR 
Sbjct: 80  LQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRW 139

Query: 714 ASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTKKLI 746
           A       N+P  T     I                           R   I+PP KKL+
Sbjct: 140 AGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLV 199

Query: 747 SADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            +D S IE R+LA +A        F         D++++  A  F +  E V+ + R+  
Sbjct: 200 ISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIG 259

Query: 802 KTINFSIIYGISP-----FRLATQLRIPR 825
           K +   + YG        F LA  L +  
Sbjct: 260 KVMELGLGYGGGVAAFLTFALAYGLDLDE 288


>gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 419

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 133/424 (31%), Gaps = 72/424 (16%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
             + +  I T +        I   +            +     D       D      LT
Sbjct: 6   YKTLAIDIETFS----DVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLT 61

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG--FEDIMLMSYVLD---SGR 500
           +EI    K    +   +K   N  +++  L +Y G+ +    +    + S +L    S  
Sbjct: 62  EEI----KNALSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLE 117

Query: 501 SSHDIASIAQKWLSYTRKEIL------------KSRKSSIPIDKISD-SQVQEHAIENSN 547
               +  ++++ L   +  I               R  ++P        Q + + I + +
Sbjct: 118 GVGAVLGLSEQKLKEGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVD 177

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           V   +   L    I E         +     +  ++   G+ +D++L++Q       +  
Sbjct: 178 VEKGIRQKLHKFPIPES--------EMAFYRLDQEINDRGVLVDRELVEQSITCDLLHKD 229

Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667
            +    Y+++G + N +S  QL   L  +                     E I   D  +
Sbjct: 230 IVTNRAYEVTGLE-NPNSVSQLKGWLSERGVEIDSLSKG--------AVAELIEDADGEV 280

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--- 724
           ++ +     ++K      +++   +    +         +  TGR A     +QN+P   
Sbjct: 281 LEALKLRLLMAKTSVKKYEAIERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNH 340

Query: 725 -------------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759
                                        L + IR AFI     + I AD+S IE R+LA
Sbjct: 341 ISDLELARSLVRRGQFEELELFYESTPNVLSELIRTAFIPKEGCRFIVADFSAIEARVLA 400

Query: 760 HIAK 763
            ++ 
Sbjct: 401 WLSG 404


>gi|148807515|gb|ABR13561.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS      ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLT--REKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont
           phage 1]
          Length = 415

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 38/198 (19%)

Query: 666 PIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724
           P ++ +L  R Q  +  ++   +L   I+   +   T     ++ TGR A       N+P
Sbjct: 111 PALRELLSIRLQSCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLP 170

Query: 725 IKTDLGQKI---------------------------RRAFISPPTKKLISADYSQIELRI 757
             T     I                           R   I+PP KKL+ +D S IE R+
Sbjct: 171 RPTLDPNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRM 230

Query: 758 LAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812
           LA +A        F         D++++  A  F +  E V+   R+  K +   + YG 
Sbjct: 231 LAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGG 290

Query: 813 SP-----FRLATQLRIPR 825
                  F LA  L +  
Sbjct: 291 GVAAFLTFALAYSLDLAE 308


>gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 86/285 (30%), Gaps = 49/285 (17%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++   G+ +D +L K     +      L      L+           + +          
Sbjct: 12  KINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTD--------NAVQNATQRDALLQH 63

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQ 697
            A               Q    D  I  ++ E   +     T       +L   ++   +
Sbjct: 64  IASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGR 123

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI------------------------ 733
              T     ++ TGR A       N+P  T     I                        
Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183

Query: 734 ---RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEI 785
              R   I+PP KKL+ +D S IE R+LA +A      + F         D++++  A  
Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARA 243

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLRIPR 825
           F +  E V+   R+  K +   + YG        F LA  L +  
Sbjct: 244 FNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDE 288


>gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 86/285 (30%), Gaps = 49/285 (17%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++   G+ +D +L K     +      L      L+           + +          
Sbjct: 12  KINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTD--------NAVQNATQRDALLQH 63

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQ 697
            A               Q    D  I  ++ E   +     T       +L   ++   +
Sbjct: 64  IASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGR 123

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI------------------------ 733
              T     ++ TGR A       N+P  T     I                        
Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183

Query: 734 ---RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEI 785
              R   I+PP KKL+ +D S IE R+LA +A      + F         D++++  A  
Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARA 243

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLRIPR 825
           F +  E V+   R+  K +   + YG        F LA  L +  
Sbjct: 244 FNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDE 288


>gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 70/209 (33%), Gaps = 41/209 (19%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            Q    D  I  ++ E   +     T       +L   ++   +   T     ++ TGR 
Sbjct: 80  LQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRW 139

Query: 714 ASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTKKLI 746
           A       N+P  T     I                           R   I+PP KKL+
Sbjct: 140 AGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLV 199

Query: 747 SADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            +D S IE R+LA +A        F         D++++  A  F +  E V+ + R+  
Sbjct: 200 ISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIG 259

Query: 802 KTINFSIIYGISP-----FRLATQLRIPR 825
           K +   + YG        F LA  L +  
Sbjct: 260 KVMELGLGYGGGVAAFLTFALAYGLDLDE 288


>gi|148807564|gb|ABR13584.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITGQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKEGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|47934798|gb|AAT39837.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 8/149 (5%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN+ S  Q+ + L   +      KT+ G      +    +   D P  K I E+  L K
Sbjct: 30  EFNVGSRXQIAERL-VGVGVKFKQKTEKGAVVVNXKV---LEGIDIPEAKTIYEYLMLQK 85

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFI 738
            ++   DS   H  ++  RVH        +TGR+    PNL  +P +    G++ R  + 
Sbjct: 86  -RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPNLAQVPSVXAPYGKECRSFWC 142

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPL 767
            P   KLI  D S +ELR+LAH  +    
Sbjct: 143 VPEGHKLIGCDASGLELRMLAHYMRDERY 171


>gi|291335899|gb|ADD95494.1| T7-like exonuclease [uncultured phage MedDCM-OCT-S08-C41]
          Length = 253

 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 24/213 (11%)

Query: 63  VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
           ++F   +V FR +I P YK +R +       +  ++   ++ +    I +   EADD + 
Sbjct: 61  ILFFSDSVNFRKKILPSYKGHRNRKKPCGYKR--VINELSKQYE--VIRMPTLEADDAMG 116

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            Y            I+S DKD+ Q+          + E  +    + ++ G     +   
Sbjct: 117 IYATANPGN----VIVSPDKDMRQIPG----RLFNMTETVM----ITEEEGYRWHLI--- 161

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
           Q + GD  D   G+PGIG K A  L  E+G   + ++ A + K     + ++     ARL
Sbjct: 162 QTMAGDQTDGYSGVPGIGIKRAVALFDEHGYTWDTVVQAFKDKDMTEEDALI----NARL 217

Query: 243 SRKLVMLRTDVP-ITIPLEHLILEDCNGPRLIS 274
           ++ L     D   I            +G  L +
Sbjct: 218 AKILTTNEYDGQVIPWTPADAGDGVDDGAELQA 250


>gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 84/285 (29%), Gaps = 49/285 (17%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++   G+ +D +L K     +      L      L+           + +          
Sbjct: 12  KINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTD--------NAVQNATQRDALLQH 63

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQ 697
            A               Q    D  I   + E   +     T       +L   ++   +
Sbjct: 64  IASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADGR 123

Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI------------------------ 733
              T     ++ TGR A       N+P  T     I                        
Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183

Query: 734 ---RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEI 785
              R   I+PP KKL+ +D S IE R+LA +A        F         D++++  A  
Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARA 243

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLRIPR 825
           F +  E V+   R+  K +   + YG        F LA  L +  
Sbjct: 244 FNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDE 288


>gi|317487295|ref|ZP_07946090.1| hypothetical protein HMPREF0179_03453 [Bilophila wadsworthia 3_1_6]
 gi|316921485|gb|EFV42776.1| hypothetical protein HMPREF0179_03453 [Bilophila wadsworthia 3_1_6]
          Length = 271

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 96/259 (37%), Gaps = 42/259 (16%)

Query: 8   FLVDGSSFIYRAFYA------------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55
            L+D     YRA                PL S         A A F   L+ +L      
Sbjct: 11  LLIDADVLAYRAAAGAEKVICFEEDSCFPLCSLAD------AQAAFFGQLYAILDQL--- 61

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIP---AIEI 112
             + +     D     FR  ++P YKANR   P  +   L  +R A      P       
Sbjct: 62  GTSDYALCFSDDHNGGFRRRLFPGYKANRDGKPRPVA--LKFLREALMRDDNPDASVYIK 119

Query: 113 QGFEADDIIATYTYIAE-KEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK 171
            G EADD +     +     G    I+S DKD+  +       YD  K + + I+ V ++
Sbjct: 120 PGLEADDCLGILATLPSFMRGRQKVIVSVDKDMKSIPG---FFYDMGKPD-LGIQPVSRE 175

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL----QEYGNLENILINASRIKQK 227
                +     Q L GD+ D  PG P IG  TA  L     ++YG+L  ++++A      
Sbjct: 176 ---DADLWHMTQTLIGDAADGYPGCPKIGPMTAKKLFDGIPRDYGHLWPVVVSAFE---- 228

Query: 228 KRRENILEYAETARLSRKL 246
           K      E    ARL+R L
Sbjct: 229 KVGFGEAEAVTQARLARIL 247


>gi|47934808|gb|AAT39842.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 253

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN +S + +  +L  K  +     T  G+ K     L ++     P  K +     L K 
Sbjct: 91  FNPTSRQHIARVLMAK-GWKPNEFTDGGEPKVDESVLAKLP---YPEAKQLARLFMLQKR 146

Query: 681 KSTYADS---LPNHINKRTQRV--HTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIR 734
               A+          K    +  H   +    +TGR     PN+  +P  +++ G++ R
Sbjct: 147 IGQLAEGDQAWLKQARKSDLGIFIHGSVNPNGAVTGRATHSYPNVAQVPGSQSEYGKECR 206

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHR 779
           + F  PP   L+ +D S +ELR L H           +     DIH 
Sbjct: 207 QLFTVPPGWVLMGSDASGLELRCLGHFMARYDKGAYIKEILEGDIHT 253


>gi|148807504|gb|ABR13556.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LA   
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLARYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807534|gb|ABR13570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   +  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTY--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPFGRECRSFWWVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 328

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 83/285 (29%), Gaps = 89/285 (31%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFG 787
           +R   ++P  KKL+ +D S IE R+LA +A        F         D++++  A  F 
Sbjct: 12  LRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPDLYKLAYARAFN 71

Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQL---------------RIPRSE 827
           ++ E V+   R+  K +   + +G        F L   L                + R  
Sbjct: 72  ISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAALPNIPRDVQREA 131

Query: 828 AADYIKR-----------------------YFHRFPGIHEY---IEKTKNFVRQN----- 856
              Y +                        +    P   ++   +E+T            
Sbjct: 132 KGWYDESVKRKATYGLSERVFIACDSLKRLWRRAHPETCDFWYQLERTVRTAIATPAKTL 191

Query: 857 --GYV---ETIFGRRIHYDEIN----------------------SPKSSIRNINERAAIN 889
             GY+         RI                            S K           + 
Sbjct: 192 YCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGINSYSRKWQRLKTYGGKLVE 251

Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
              Q +A D+    M  +  +         ++L +HDE++ E P+
Sbjct: 252 NVTQAAARDVLAGNMPLIENA------GYSIVLTVHDEVICEAPD 290


>gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 310

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 103/284 (36%), Gaps = 27/284 (9%)

Query: 660 INCGDNPIIKNILEWRQLSKIKSTY--ADSLPNHINKRTQRVHTFYSL---ASTMTGRLA 714
           +   ++  +  I E R+ +K       A  L   +N R    +            TGR  
Sbjct: 1   MKRENHEFLP-IFEARERAKSNQAVSRAKKLVQAVNGRPNNDNKLVVPLVYYGAHTGRYG 59

Query: 715 SLEP-NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
             E  NLQN+      G + R+A  +P  + +  AD S IE RI+A  A+ T L   F+N
Sbjct: 60  GNEGLNLQNLQR----GSEHRKALTAPFGQLVYVADSSNIEARIVAWFAQETALLNQFKN 115

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQ-MRRHAKTINFSIIYGISPFRLATQLR---------- 822
            +D +  +A +I+G  + K + Q  R   K     + YG+        +           
Sbjct: 116 GIDTYATLATDIYGFPVTKQTHQLERNVGKVARLGLQYGMGARTFHRTMESGPMGIPPMP 175

Query: 823 IPRSEAADYIKRYFHRFPGIHEYIE---KTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879
               E    +K Y    P I +  E   +    + +   +ET     + +  +  P    
Sbjct: 176 WAFPEIEKIVKTYRRTHPMIKKCWEIGNQIIQKMIRKDTLETWRCLTVRHQCLELPNGMY 235

Query: 880 RNI-NERAAINAPIQGSAADITRRAMISVHKSLEDHKL-ATKML 921
               N R       QG   ++   +     K L + +L   K+L
Sbjct: 236 LQFPNLRNKEIQTAQGPQYEVVYDSYDYKSKKLVEKRLYGGKLL 279


>gi|148807541|gb|ABR13573.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807546|gb|ABR13575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       ++N+ S KQ+ + L   +      
Sbjct: 9   THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEYNVGSRKQIAERL-EGVGVKFKL 67

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 68  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 121

Query: 704 SLASTMTGRLASLEPNLQNI-PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +  +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 122 ITNGAVTGRMTHHSPNLAQVASVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 181

Query: 763 KITPL 767
           +    
Sbjct: 182 RDERY 186


>gi|148807603|gb|ABR13601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  + I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAEMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+ AH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMPAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|163937891|ref|YP_001642777.1| DNA polymerase I-like protein [Bacillus weihenstephanensis KBAB4]
 gi|163865746|gb|ABY46802.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase
           domains [Bacillus weihenstephanensis KBAB4]
          Length = 594

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 113/361 (31%), Gaps = 22/361 (6%)

Query: 270 PRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
             +      +   KL ++   +     A       +   T +  +     +     +   
Sbjct: 37  ETIEEAFDRISQMKLNDK--ESMQLKVAREAVKNGEAGRTGSGKMTKGEALGIGAKVMAK 94

Query: 330 QFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS 389
           + SSL     +   E  P+   +    +     +        +     +   + L     
Sbjct: 95  RESSLKSDRIRDVIENQPKNFHVIMKDEQLHPFMQRLREEVKLQQAQWKDRFEMLGVKSL 154

Query: 390 ASFKIITDTMDAFHSKPIAIAISTL---DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
            +       +DAF    I  +I      +        VE     +    +  S       
Sbjct: 155 TANDFEGTGIDAFLDLSIGFSIWLPILDEGYYLAYGHVEIEDESIPEEYAHKSDAPQLTR 214

Query: 447 KEILSYLKKFFENEHFLKIGH--NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSH 503
             +L  +  +  N+   K  H  + +YD  +    G ++ G   D +   Y++    +S+
Sbjct: 215 SRVLDMITPYLSNKDHGKSFHMGSARYDLHIAENDGYTIDGCVWDSLDAMYIMTEHLNSY 274

Query: 504 DIASIAQKWLS---------YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
            +  + Q++           YT  ++   R  + P + +    V  +AI +     +L  
Sbjct: 275 GLKPLIQRYGQRYLGIENEVYTFDDLFGKRSPA-PFNTL---IVGIYAIYDVYYGWKLTE 330

Query: 555 -LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613
                    +KLL  Y  +D  +  V + M  +G  +D D   Q+  E +  +    + +
Sbjct: 331 WQFETMKKTDKLLDCYALIDSKLSQVDAYMVRSGFNVDLDEFAQLEKEFTVKVDEAIDAV 390

Query: 614 Y 614
           +
Sbjct: 391 F 391


>gi|38707863|ref|NP_944958.1| Putative DNA polymerase [Enterobacteria phage Felix 01]
 gi|33340466|gb|AAQ14817.1| putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 906

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/401 (15%), Positives = 130/401 (32%), Gaps = 93/401 (23%)

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGR 712
             +  +  + + I ++  L   + T  +S        N I     R+     +  T TGR
Sbjct: 510 SYDTIEGELGQKIAKYYTLMHRRRTIENSKDDEKGWLNQIRPDG-RLSAGAMVFGTSTGR 568

Query: 713 LASLEPNLQNIPIKTD-LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           +   +  + N+P      G+ +R  +I      +IS D +  +L +L +        +  
Sbjct: 569 M--TQYGIVNVPSGAAVYGEPMRAVWICEEGTDIISVDQNSAQLVLLCNFMGDEDFTKAV 626

Query: 772 ENSL---------------------------------------------DIHRMVAAEIF 786
                                                            D H +  +  F
Sbjct: 627 TEGKESVEFTKQDDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHTL-NSIYF 685

Query: 787 GVNIEKV--------SPQM-------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           G+N E+           ++       R+ AK   +++++G    + A  ++   +E    
Sbjct: 686 GLNKEEDIVRCRETQDEELLHEITKGRKKAKNGIYALLFGAGDEKFAKTIKASSTEEGAL 745

Query: 832 IKR-YFHRFPGIHEYIEKTKN------FVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            K+ YF R P I + +++ +          +  + +T    +     I    + +   + 
Sbjct: 746 TKQTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKG--GYIKVAGAWLWCKSP 803

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKL----------ATKMLLQIHDELVFEVPE 934
              +N  + GS A +    +   ++ L + KL            + +   HDE+  EVP 
Sbjct: 804 HKLLNYTLMGSEAQVQNEGINLANRELTERKLTVLNGRKPAIGARWVCSYHDEVSLEVPT 863

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKV--NIKVSNNWQ 973
           +++    +II   M       + L+    V    KV   W 
Sbjct: 864 KDVPDVKEII-DRMYGQASKNLGLKSKTLVTGTGKVGKTWY 903


>gi|229472493|gb|ACQ72761.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 174

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 27/188 (14%)

Query: 746 ISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           + AD S +ELR L H        +  +     DIH   A EI+G +        R+  K 
Sbjct: 8   VGADASGLELRCLGHYLARFDGGKFAKEVVEGDIHTAPA-EIYGTD--------RKSGKG 58

Query: 804 INFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
           + + +IYG    +L       +++A     +   R      G        +   + +G +
Sbjct: 59  VTYCLIYGGGDSKLGLTAGASKAQAVKKGKEVRSRIMANLGGFAALNAAVQERAK-SGVL 117

Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
           + + GR I                  AA+N  +Q + A I +  ++  ++ L++  +   
Sbjct: 118 KGLDGRPIRL-----------QGKNHAALNYLLQSAGAVICKLWLLRSYELLDEAGIDYF 166

Query: 920 MLLQIHDE 927
            +  IHDE
Sbjct: 167 PMAFIHDE 174


>gi|148807511|gb|ABR13559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +F + S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFKVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|262212245|gb|ACY35739.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 27/192 (14%)

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN--SLDIHRMVAAEIFGV 788
            + R  F        + +D S +ELR L H        +  E   + DIH  +A EI+G 
Sbjct: 10  HEYRSLFKPSDNHLQVGSDASGLELRCLGHYLSRYDGGKFAEEVVNGDIHTALA-EIYGT 68

Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA----ADYIKRYFHRFPGIHE 844
           +        R+  K + + +IYG    +L       +S A     +   +      G  +
Sbjct: 69  D--------RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEIRGKIMQGLSGFAD 120

Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
                +   + +G ++ + GR I                  AA+N  +Q + A I +  +
Sbjct: 121 LNAAIQERAK-SGVLKGLDGRPIRL-----------QGKNHAALNYLLQSAGAIICKLWV 168

Query: 905 ISVHKSLEDHKL 916
           I  H+ L++  L
Sbjct: 169 IRTHELLQEAGL 180


>gi|33340353|gb|AAQ14704.1|AF320576_163 putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 909

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 62/401 (15%), Positives = 130/401 (32%), Gaps = 93/401 (23%)

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGR 712
             +  +  + + I ++  L   + T  +S        N I     R+     +  T TGR
Sbjct: 513 SYDTIEGELGQKIAKYYTLMHRRRTIENSKDDEKGWLNQIRPDG-RLSAGAMVFGTSTGR 571

Query: 713 LASLEPNLQNIPIKTD-LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           +   +  + N+P      G+ +R  +I      +IS D +  +L +L +        +  
Sbjct: 572 M--TQYGIVNVPSGAAVYGEPMRAVWICEEGTDIISVDQNSAQLVLLCNFMGDEDFTKAV 629

Query: 772 ENSL---------------------------------------------DIHRMVAAEIF 786
                                                            D H +  +  F
Sbjct: 630 TEGKESVEFTKQDDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHTL-NSIYF 688

Query: 787 GVNIEKV--------SPQM-------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           G+N E+           ++       R+ AK   +++++G    + A  ++   +E    
Sbjct: 689 GLNKEEDIVRCRETQDEELLHEITKGRKKAKNGIYALLFGAGDEKFAKTIKASSTEEGAL 748

Query: 832 IKR-YFHRFPGIHEYIEKTKN------FVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            K+ YF R P I + +++ +          +  + +T    +     I    + +   + 
Sbjct: 749 TKQTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKG--GYIKVAGAWLWCKSP 806

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKL----------ATKMLLQIHDELVFEVPE 934
              +N  + GS A +    +   ++ L + KL            + +   HDE+  EVP 
Sbjct: 807 HKLLNYTLMGSEAQVQNEGINLANRELTERKLTVLNGRKPAIGARWVCSYHDEVSLEVPT 866

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKV--NIKVSNNWQ 973
           +++    +II   M       + L+    V    KV   W 
Sbjct: 867 KDVPDVKEII-DRMYGQASKNLGLKSKTLVTGTGKVGKTWY 906


>gi|63054429|ref|NP_588025.2| mitochondrial DNA polymerase [Schizosaccharomyces pombe 972h-]
 gi|20141418|sp|Q12704|DPOG_SCHPO RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|157310502|emb|CAB76231.2| mitochondrial DNA polymerase [Schizosaccharomyces pombe]
          Length = 1018

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 88/269 (32%), Gaps = 48/269 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +   K  LG +++    +P     + AD    EL I+
Sbjct: 631 ILPCIIPMGTVTRRAVENTWLTASNSKKNRLGSELKAMIRAPDGYTFVGADVDSEELWIV 690

Query: 759 AHIA------------KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           A +              +  L        D+H   AA I GV         R  AK  N+
Sbjct: 691 ALMGDSQFRLHGATALGMMTLEGKKSEGTDLHSKTAA-ILGV--------SRDSAKVFNY 741

Query: 807 SIIYGISPFR-----LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------R 854
             +YG          +     +  +EA +  K+ +    G+   + K    +        
Sbjct: 742 GRLYGAGLKHTTLLLMQMNPTLKTAEAKELAKKLYASTKGVKSKMSKRLQEMGLPKLTFW 801

Query: 855 QNG---YVETIFGRRIHYDEIN------------SPKSSIRNINERAAINAPIQGSAADI 899
             G   +V                          S K+  +N    + +N  IQ SA D 
Sbjct: 802 SQGTESFVFNKLEAMAQLPSPRTPVLDAGITQALSSKNLSKNSFMTSRVNWAIQSSAVDY 861

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDEL 928
               ++S++  ++ + L  ++ L +HDE+
Sbjct: 862 LHLLLVSMNHLIKKYYLEARLSLTVHDEV 890


>gi|1129171|emb|CAA88012.1| mitochondrial DNA polymerase gamma [Schizosaccharomyces pombe]
          Length = 1018

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 88/269 (32%), Gaps = 48/269 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +   K  LG +++    +P     + AD    EL I+
Sbjct: 631 ILPCIIPMGTVTRRAVENTWLTASNSKKNRLGSELKAMIRAPDGYTFVGADVDSEELWIV 690

Query: 759 AHIA------------KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           A +              +  L        D+H   AA I GV         R  AK  N+
Sbjct: 691 ALMGDSQFRLHGATALGMMTLEGKKSEGTDLHSKTAA-ILGV--------SRDSAKVFNY 741

Query: 807 SIIYGISPFR-----LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV-------R 854
             +YG          +     +  +EA +  K+ +    G+   + K    +        
Sbjct: 742 GRLYGAGLKHTTLLLMQMNPTLKTAEAKELAKKLYASTKGVKSKMSKRLQEMGLPKLTFW 801

Query: 855 QNG---YVETIFGRRIHYDEIN------------SPKSSIRNINERAAINAPIQGSAADI 899
             G   +V                          S K+  +N    + +N  IQ SA D 
Sbjct: 802 SQGTESFVFNKLEAMAQLPSPRTPVLDAGIQQALSSKNLSKNSFMTSRVNWAIQSSAVDY 861

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDEL 928
               ++S++  ++ + L  ++ L +HDE+
Sbjct: 862 LHLLLVSMNHLIKKYYLEARLSLTVHDEV 890


>gi|47934628|gb|AAT39752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
           FN  S KQ+ + L   L      KT+ G      +    ++  D P  K +  +  L K 
Sbjct: 50  FNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKV---LDGIDLPEAKAVARYMMLQK- 104

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFIS 739
           +    DS    + K   RVH        +TGR+  L PN+  +P +    G + R  +  
Sbjct: 105 RVAQIDSWLKAV-KDDGRVHGRVITNGAVTGRMTHLSPNMAQVPAVSAPFGTECRSCWTV 163

Query: 740 PPTKKLISADYSQIELRILAHI 761
                L+  D S +ELR+LAH 
Sbjct: 164 DEGNSLVGIDASGLELRMLAHY 185


>gi|148807599|gb|ABR13599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+    K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMSQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                ++GR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVSGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
 gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
          Length = 377

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 97/250 (38%), Gaps = 30/250 (12%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            N  +   + + K + + V++L      +F +  D++  +  K   I +S+         
Sbjct: 8   TNPAAAHLVTDQKTLDELVERLSRESVLAFDLEADSLHHYTEKVCLIQVSSA-------- 59

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGI 481
                        S+D         ++   L   F N    KI H   YD   L+R +GI
Sbjct: 60  -------------SEDRLIDPLAPIDV-KVLAPIFANPAIKKIFHGADYDMRSLYRDFGI 105

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +    D M+ S  L  G S   +A++ +K       E+ K  + +    +    ++ ++
Sbjct: 106 EVVNLFDTMIASQFL--GESEFGLAALLKKRFGV---ELDKRYQKADWSKRPFSQEMLDY 160

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A+++++++++L+  L  +L  +  L   E  +  ++  V      G  +     K  S  
Sbjct: 161 AMKDTSLLIELYRQLEAELKQKGRLAWVEE-ESELVAGVRSPSREGELMCL-RFKGASKM 218

Query: 602 ISKNLLSLEE 611
             + L  LEE
Sbjct: 219 KPRELAVLEE 228


>gi|148724472|ref|YP_001285438.1| exonuclease [Cyanophage Syn5]
 gi|145588117|gb|ABP87936.1| exonuclease [Synechococcus phage Syn5]
          Length = 245

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 88/235 (37%), Gaps = 39/235 (16%)

Query: 43  NMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102
            ++ + L+  R E   +   V+F      FR ++ P YK NR K       +L    ++T
Sbjct: 45  RIIKQNLKELR-ERFETEDLVLFWTDKKNFRKDVEPTYKGNRTKRKPAGYAKLKKWAMST 103

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK 162
                 ++   G EADD +           F   ++S DKD+ Q+      LY+  +E  
Sbjct: 104 ----WKSVMKPGLEADDALGIVATQGNISNF--VLVSPDKDMEQIP---CRLYNLKREFT 154

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL-QEYGNLENILINA 221
              E   +K        + +Q LTGDS D   G PG+G K A L+L    G+     + A
Sbjct: 155 QTPEDAERK--------LYVQCLTGDSTDGYRGCPGVGPKRADLILDNREGSYWEACVTA 206

Query: 222 SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                           E A  + +L  +            L  ED +  + +  L
Sbjct: 207 FEAAGCTY--------EDALTNLRLARI------------LQAEDWDAEKQVPIL 241


>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
 gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
          Length = 377

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 98/250 (39%), Gaps = 30/250 (12%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
            N  +   + + K + + V++L      +F +  D++  +  K   I +S+         
Sbjct: 8   TNPAAAHLVTDQKTLDELVERLSRESVLAFDLEADSLHHYTEKVCLIQVSS--------- 58

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGI 481
                       TS+D         ++   L   F N    KI H   YD   L+R +GI
Sbjct: 59  ------------TSEDRLIDPLAPIDV-KVLAPIFANPAIKKIFHGADYDMRSLYRDFGI 105

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +    D M+ S  L  G S   +A++ +K       E+ K  + +    +    ++ ++
Sbjct: 106 EVVNLFDTMIASQFL--GESEFGLAALLKKRFGV---ELDKRYQKADWSKRPFSQEMLDY 160

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           A+++++++++L+  L  +L  +  L   E  +  ++  V      G  +     K  S  
Sbjct: 161 AMKDTSLLIELYRQLEAELKQKGRLAWVEE-ESELVAGVRSPSREGELMCL-RFKGASKM 218

Query: 602 ISKNLLSLEE 611
             + L  LEE
Sbjct: 219 KPRELAVLEE 228


>gi|148807579|gb|ABR13590.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  + I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAEMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S + LR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDASGLXLRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|148807528|gb|ABR13567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S K++ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKRIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K   E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDIPEAKTTYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D S +ELR+LAH  
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYM 182

Query: 763 KITPL 767
           +    
Sbjct: 183 RDERY 187


>gi|240275320|gb|EER38834.1| DNA polymerase gamma [Ajellomyces capsulatus H143]
          Length = 1084

 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 117/377 (31%), Gaps = 60/377 (15%)

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +  +   L   +    G     SSP   G +  F   K  S         +  A     I
Sbjct: 527 LRDDREHLYFKLPHKDGPDARCSSPLAKGYLQYFEGGKLSSQFALAKEALEMNASCSYWI 586

Query: 661 NCGDNPIIKNILEWRQLSKIKST--------YADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +  D  + + ++    + ++++             LP  I   T       +   T +  
Sbjct: 587 SARDRIMSQMVVYHNDIERLQNKSSSNSTLKQGYILPQIIPMGTITRRAVENTWLTAS-- 644

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                 N +   + ++L   +R    +PP    + AD    EL I A +           
Sbjct: 645 ------NAKANRVGSELKAMVR----APPGYVFVGADVDSEELWI-ASLVGDAQFQIHGG 693

Query: 773 N-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
           N               D+H   A+ I G+         R  AK  N+  IYG     L  
Sbjct: 694 NAIGFMTLEGTKSAGTDLHSKTAS-ILGI--------SRNDAKVFNYGRIYGA---GLKF 741

Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV----ETIFGRRIHYDEINS- 874
              + R       ++   R     +  ++TK     + Y      +    R     + + 
Sbjct: 742 AATLLRQFNPSMSEQETKR--VAAKLYKETKGEAPNHSYSISLRSSRKQERPRTPVLGAG 799

Query: 875 ------PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
                  +   +     + IN  IQ S  D     +IS+   +    L  ++ + +HDE+
Sbjct: 800 ITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAITVHDEI 859

Query: 929 VFEVPEEEITTASQIIV 945
            + V E +   A+  + 
Sbjct: 860 RYLVKEHDKYRAAMALQ 876


>gi|67470614|ref|XP_651270.1| FEN-1 nuclease [Entamoeba histolytica HM-1:IMSS]
 gi|317374901|sp|C4M6G8|FEN1_ENTHI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|56467989|gb|EAL45884.1| FEN-1 nuclease, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 376

 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 96/283 (33%), Gaps = 55/283 (19%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHD----GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  +D S  +Y+   A    +        G   + I G      KL+++  K     +
Sbjct: 28  GRVIAIDASILVYQFISAVRDTTGATMVDEFGETTSHIIGTFYRTIKLIESGIK---PIY 84

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEML-----------------------LPQLPL 97
              +FD      ++      K N  K  E L                         Q   
Sbjct: 85  ---VFDGKPPEMKDGELHKRKENAQKAQEQLDKALEEGDKEQAKKLMKRTARMTKEQSDE 141

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+   Q  GIP IE    EA+   A         G      + D D + L S       +
Sbjct: 142 VKKLLQLMGIPCIEA-NCEAEGTCAALVK----AGKCYATATEDMDALTLGSEHVVRKFS 196

Query: 158 VKEEKIDI------EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             + K D         ++++ G   E+ + L  L G   D    I G+G  TA  L+Q+Y
Sbjct: 197 ANDNKKDPIREYSLSSILEETGFTMEQFIDLCILLG--CDYCETIKGVGPITAFELIQQY 254

Query: 212 GNLENILINA-------SRIKQKKRRENILEYAETARLS-RKL 246
            ++ENIL +           K K+ RE  L + + A  S  KL
Sbjct: 255 KSIENILQHLSDKYKVPENWKYKEARELFL-HPDVADFSDYKL 296


>gi|47934802|gb|AAT39839.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 228

 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675
           +   +FNL S +Q+G  L     +     T+TGQ     + LE     D P  + I E+ 
Sbjct: 79  IDWPEFNLGSRQQIGRYL-RLFGWKPEKFTETGQAVVDEKTLE--TVTDIPEAQLIAEYL 135

Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-IKTDLGQKIR 734
            + K  +    SL     +   RVH   +    +TGR+    PN+   P +    G + R
Sbjct: 136 MVGKRIAQVQSSLDAV--EDDGRVHGQVNAIGAVTGRMTHSSPNMAQTPAVGVPYGYECR 193

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKIT 765
             +I P   KL+  D S +ELR+LA      
Sbjct: 194 ACWIVPDGHKLVGVDASGLELRMLASFMNDP 224


>gi|162417895|ref|YP_001604610.1| putative exonuclease, truncation [Yersinia pestis Angola]
 gi|162350867|gb|ABX84816.1| putative exonuclease, truncation [Yersinia pestis Angola]
          Length = 173

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 22/179 (12%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDG-LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
             VDG+S  Y  ++      + H+G + V A  GF   + +         +     +++D
Sbjct: 4   LFVDGNSLGY--YH--QQSDKLHNGEMEVQAAFGFVKNVRRYASILHARPM-----ILWD 54

Query: 67  YPAVTFRNEIYPDYKANR------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                 R + YP+YKANR       K+ E    Q P +     A G+  +  +  EADD+
Sbjct: 55  -GFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQLIAKDAEADDL 113

Query: 121 IATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI 174
                     +     + +++ D D +QLV             K ++++ E   +  G+
Sbjct: 114 AGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQVNFEQFAELTGL 172


>gi|326912829|ref|XP_003202748.1| PREDICTED: DNA polymerase theta-like [Meleagris gallopavo]
          Length = 2152

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 18/166 (10%)

Query: 811  GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY--IEKTKNFVRQNGYVETIFGRRIH 868
            GIS  +    L +    + D+  RY      +  +  + +  + +R+     T+  +R  
Sbjct: 1997 GISTGQGVQSLGLS--SSEDHSGRYRAAIESVLIFNVMNQLHSELRKENLTATVNIQRC- 2053

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             + + S   S              Q    D T R     ++ +         +LQ+HDEL
Sbjct: 2054 LEALFSVSKS------HGHRENSFQ---RDKTGRLSRKRNREMLHPISGGFFILQLHDEL 2104

Query: 929  VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
            ++EV E+++   +QI+ H ME A    + L V L V +K+  +W +
Sbjct: 2105 LYEVAEDDVIQVAQIVKHEMENA----VKLSVKLNVKVKIGPSWGD 2146



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 9/189 (4%)

Query: 407  IAIAISTLDQKDDT-SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF-ENEHFLK 464
            + +A+    +     S +      ++S   +     KN    E L +L+ +  E      
Sbjct: 1878 VGLAVCWGGKDAYYISLQQMQDQTEISPSLAPPPLDKNLSVTERLHHLQLYLQEKHERSI 1937

Query: 465  IGHN-IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-- 520
            + +N I++ K +L   GIS+ G FED  +  ++LDSG     + ++   +L      +  
Sbjct: 1938 VMYNFIQHYKTLLLACGISLEGSFEDPKVACWLLDSGSRERTLHNMVTNFLPSELPLLEG 1997

Query: 521  --LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578
                    S+ +    D   +  A   S +I  +   L  +L  E L      + + +  
Sbjct: 1998 ISTGQGVQSLGLSSSEDHSGRYRAAIESVLIFNVMNQLHSELRKENLTATV-NIQRCLEA 2056

Query: 579  VVSQMEITG 587
            + S  +  G
Sbjct: 2057 LFSVSKSHG 2065


>gi|291335762|gb|ADD95365.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C243]
          Length = 237

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 11/131 (8%)

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
            +     +   ST T R A  +PNL  +P   +        F + P   ++ AD S IEL
Sbjct: 64  GEGRIHHHCSVSTNTFRCAHRKPNLAQVPASEEFR----ELFTASPGMVMVGADLSGIEL 119

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815
           R+LAH          ++       ++  +I  VN +K+    RR  KT+ ++ +YG    
Sbjct: 120 RMLAHYLGR------YDGGRYADILLNDDIHQVNADKIGI-TRRQVKTVTYAFLYGAGNE 172

Query: 816 RLATQLRIPRS 826
           +L T       
Sbjct: 173 KLGTSYDNSLQ 183


>gi|307190034|gb|EFN74248.1| DNA polymerase theta [Camponotus floridanus]
 gi|307190035|gb|EFN74249.1| DNA polymerase theta [Camponotus floridanus]
          Length = 158

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 543 IENSNVILQLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600
              + +   +   +  KL      LL+ +  ++  ++ +++ ME++GI I+   L+++S 
Sbjct: 27  ATEAVLTWHMMDNVMNKLEEFNPVLLYAFREIEMKIVIILACMELSGIGINIKSLQELSL 86

Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
             S  + SLE   YDL+G KFN SSPK++G +L          K  T +          +
Sbjct: 87  VTSNEMQSLETKAYDLAGRKFNFSSPKEVGQVL----GLSKDKKVSTSK--------AVL 134

Query: 661 NCGDNPIIKNILEWRQLSKIKSTY 684
              DNPI   ++ WR+LS  K+  
Sbjct: 135 EKCDNPISNLVISWRKLSATKTKV 158


>gi|288924467|ref|ZP_06418439.1| hypothetical protein FrEUN1fDRAFT_8137 [Frankia sp. EUN1f]
 gi|288344186|gb|EFC78743.1| hypothetical protein FrEUN1fDRAFT_8137 [Frankia sp. EUN1f]
          Length = 457

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 35/225 (15%)

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
           T           +P +  +L WR+  ++ +TY     +       R+   +  +    GR
Sbjct: 256 TRSWRLTALRAAHPAVDALLRWRRAERVATTYGFRWLDEHVGADGRLRGEWRGSDGAAGR 315

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
           + +    L N+P        +R   ++ P  + + AD  QIE R+LA ++    L     
Sbjct: 316 MTAA-AGLHNLPAD------LRVVVVAEPGHQFVRADLGQIEPRVLAVVSGDRELAAA-T 367

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832
              D++  VAA + GV+        R  AK    + +YG +       LR          
Sbjct: 368 GQDDLYAPVAARL-GVD--------RPTAKVAVLAAMYGQTSGTAGQALR---------- 408

Query: 833 KRYFHRFPGIHEYIE---KTKNFVRQNGY----VETIFGRRIHYD 870
            +    +P    Y++          + G+    + T  GRR+   
Sbjct: 409 -QMRRSYPVALAYLDAAESAGRAAARGGFDGPPLRTFGGRRLPLR 452


>gi|47934836|gb|AAT39856.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 219

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 8/163 (4%)

Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678
           ++FN SS   +  IL T   +   + T TG+       L++I          +L+  +  
Sbjct: 63  KEFNPSSRDHIAWILKTHCGWTPSSLTSTGKAVIDETVLKEIGTDTALKFLTLLDLTKQL 122

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738
            + S   ++    +   T      Y   +T T R A   PNL  +P       + RR F 
Sbjct: 123 GMISEGVNAWQKLV--TTSSRIHHYCSTNTATFRCAHRTPNLGQVPSDE----RFRRLFT 176

Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFE--NSLDIHR 779
           + P +++++AD S IELR+LAH        +      + DIH 
Sbjct: 177 ATPGQRMVAADLSGIELRMLAHYLARYDGGRYANILTTGDIHT 219


>gi|238499913|ref|XP_002381191.1| DNA polymerase gamma [Aspergillus flavus NRRL3357]
 gi|220692944|gb|EED49290.1| DNA polymerase gamma [Aspergillus flavus NRRL3357]
          Length = 1015

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 93/294 (31%), Gaps = 44/294 (14%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           RT  +        T+T R         +   +  +G +++    +PP    + AD    E
Sbjct: 542 RTGFILPQVIPMGTITRRAVENTWLTASNAKENRVGSELKAMIKAPPGYVFVGADVDSQE 601

Query: 755 LRILAHIA------------KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           L I + I                 L        D+H   A +I G+         R  AK
Sbjct: 602 LWIASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-KILGI--------SRNDAK 652

Query: 803 TINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
             N+  IYG      A+ LR     +   +  +   + +    G         +     G
Sbjct: 653 VFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQEVATKLYQETKGARTTRRILSDSPFWRG 712

Query: 858 YVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITR 901
             E+             R     + +        +   R     + IN  IQ S  D   
Sbjct: 713 GTESFVFNKLEEFADQERPRTPTLGAGITEALMRRFINRGSFMTSRINWAIQSSGVDYLH 772

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI--TTASQIIVHSMEKACL 953
             +I++   +    +A ++ + +HDE+ + V +E+      +  + +   +A  
Sbjct: 773 LLIIAMDYLIRRFNIAARLAITVHDEIRYLVKDEDKYRAALALQVANVWTRAMF 826


>gi|307084736|ref|ZP_07493849.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu012]
 gi|308365685|gb|EFP54536.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis
           SUMu012]
          Length = 133

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILE 235
              L  L GD  D +PG+PG+G KTAA LL  +G+L+ I+  A   K    K  R  +L 
Sbjct: 10  YAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKLLA 69

Query: 236 YAETARLSRKLVMLRTDVPITI--PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293
            +   + + ++V + TD P+T+  P +   L   +  R             I R+    D
Sbjct: 70  ASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESSIARLQKALD 129

Query: 294 C 294
            
Sbjct: 130 T 130


>gi|17365997|sp|Q9QYV8|DPOG1_RAT RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|5912568|emb|CAB56206.1| DNA polymerase gamma [Rattus norvegicus]
 gi|149057256|gb|EDM08579.1| polymerase (DNA directed), gamma, isoform CRA_a [Rattus norvegicus]
 gi|149057257|gb|EDM08580.1| polymerase (DNA directed), gamma, isoform CRA_a [Rattus norvegicus]
          Length = 1216

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 129/430 (30%), Gaps = 120/430 (27%)

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             G  +N+ SP       F K   P             A+    +      I K I  WR 
Sbjct: 733  DGNNYNVGSP-------FAKDFLPKMEDGTLQAGPGGARGPRAL-----EINKMISFWRN 780

Query: 677  LSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTGRLASLEPNLQN 722
              K I S     LP     R    H  +               A T+T R         +
Sbjct: 781  AHKRISSQMVVWLPRSALPRAVTRHPSFDEESHYGAILPQVVTAGTITRRAVEPTWLTAS 840

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVF------ 771
                  +G +++    +PP   L+ AD    EL I      AH A +      F      
Sbjct: 841  NARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAGMHGCT-AFGWMTLQ 899

Query: 772  ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--I 823
                   D+H   AA +            R HAK  N+  IYG       RL  Q    +
Sbjct: 900  GRKSRGTDLHSKTAATV---------GISREHAKVFNYGRIYGAGQSFAERLLMQFNHRL 950

Query: 824  PRSEAADYIKRYFHRFPGIHEY-----------------------------IEKTKNFVR 854
             R EAAD  ++ +    G+  Y                             + K +    
Sbjct: 951  SRQEAADKAQQMYAVTKGLRRYRLSDDGEWLVKQLNVPVDRTEDGWVSLQDLRKIRREAS 1010

Query: 855  QNGY-----VET-----------IFGRRIHYDEINSPKSS--------------IRNINE 884
            +        V T           +F +       ++P++               ++    
Sbjct: 1011 RKSRWKKWEVVTERAWTGGTESEMFNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEFM 1070

Query: 885  RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS--- 941
             + +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V EE+   A+   
Sbjct: 1071 TSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALAL 1130

Query: 942  ---QIIVHSM 948
                ++   M
Sbjct: 1131 QITNLLTRCM 1140


>gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18]
 gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18]
          Length = 377

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 85/216 (39%), Gaps = 28/216 (12%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
           +      N  +   + + K + + V++L      +F +  D++  +  K   I +S+  +
Sbjct: 2   QNKHKATNPAAAHLVTDQKTLDELVERLSKESVLAFDLEADSLHHYTEKVCLIQVSSESE 61

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                                     + L    +  L   F N    KI H   YD   L
Sbjct: 62  NRLI----------------------DPLAPIDVRVLAPIFANPAIKKIFHGADYDMRSL 99

Query: 477 HR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
           +R +GI +    D M+ S  L  G S   +A++ +K       E+ K  + +    +   
Sbjct: 100 YRDFGIEVVNLFDTMIASQFL--GESEFGLAALLKKRFGV---ELDKRYQKADWSKRPFS 154

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            ++ E+A+++++++++L+  L  +L+ +  L   E 
Sbjct: 155 QEMLEYAMKDTSLLIELYRQLEAELLAKGRLAWVEE 190


>gi|16758292|ref|NP_445980.1| DNA polymerase subunit gamma-1 [Rattus norvegicus]
 gi|5912570|emb|CAB56207.1| DNA polymerase gamma [Rattus norvegicus]
          Length = 1216

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 129/430 (30%), Gaps = 120/430 (27%)

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             G  +N+ SP       F K   P             A+    +      I K I  WR 
Sbjct: 733  DGNNYNVGSP-------FAKDFLPKMEDGTLQAGPGGARGPRAL-----EINKMISFWRN 780

Query: 677  LSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTGRLASLEPNLQN 722
              K I S     LP     R    H  +               A T+T R         +
Sbjct: 781  AHKRISSQMVVWLPRSALPRAVTRHPSFDEESHYGAILPQVVTAGTITRRAVEPTWLTAS 840

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVF------ 771
                  +G +++    +PP   L+ AD    EL I      AH A +      F      
Sbjct: 841  NARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAGMHGCT-AFGWMTLQ 899

Query: 772  ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--I 823
                   D+H   AA +            R HAK  N+  IYG       RL  Q    +
Sbjct: 900  GRKSRGTDLHSKTAATV---------GISREHAKVFNYGRIYGAGQSFAERLLMQFNHRL 950

Query: 824  PRSEAADYIKRYFHRFPGIHEY-----------------------------IEKTKNFVR 854
             R EAAD  ++ +    G+  Y                             + K +    
Sbjct: 951  SRQEAADKAQQMYAVTKGLRRYRLSDDGEWLVKQLNVPVDRTEDGWVSLQDLRKIRREAS 1010

Query: 855  QNGY-----VET-----------IFGRRIHYDEINSPKSS--------------IRNINE 884
            +        V T           +F +       ++P++               ++    
Sbjct: 1011 RKSRWKKWEVVTERAWTGGTESEMFNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEFM 1070

Query: 885  RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS--- 941
             + +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V EE+   A+   
Sbjct: 1071 TSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALAL 1130

Query: 942  ---QIIVHSM 948
                ++   M
Sbjct: 1131 QITNLLTRCM 1140


>gi|317150544|ref|XP_001824106.2| DNA polymerase gamma [Aspergillus oryzae RIB40]
          Length = 1107

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 93/294 (31%), Gaps = 44/294 (14%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           RT  +        T+T R         +   +  +G +++    +PP    + AD    E
Sbjct: 634 RTGFILPQVIPMGTITRRAVENTWLTASNAKENRVGSELKAMIKAPPGYVFVGADVDSQE 693

Query: 755 LRILAHIA------------KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           L I + I                 L        D+H   A +I G+         R  AK
Sbjct: 694 LWIASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-KILGI--------SRNDAK 744

Query: 803 TINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
             N+  IYG      A+ LR     +   +  +   + +    G         +     G
Sbjct: 745 VFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQEVATKLYQETKGARTTRRILSDSPFWRG 804

Query: 858 YVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITR 901
             E+             R     + +        +   R     + IN  IQ S  D   
Sbjct: 805 GTESFVFNKLEEFADQERPRTPTLGAGITEALMRRFINRGSFMTSRINWAIQSSGVDYLH 864

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI--TTASQIIVHSMEKACL 953
             +I++   +    +A ++ + +HDE+ + V +E+      +  + +   +A  
Sbjct: 865 LLIIAMDYLIRRFNIAARLAITVHDEIRYLVKDEDKYRAALALQVANVWTRAMF 918


>gi|260889283|ref|ZP_05900546.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860694|gb|EEX75194.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 168

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 7/165 (4%)

Query: 447 KEILSY-LKKFFENEHFLKIGHNI--KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSH 503
           KEI++Y +K++ +N      G+++  K   +   R+GI    + DI+L  YVL    S  
Sbjct: 5   KEIIAYNVKEYMKNGESEYFGYSVGGKTYGINNDRFGIKCTEYFDILLARYVL-GTESLQ 63

Query: 504 DIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           +I  I          T +E  K  +       +SD  V E   + +  I +L  + R +L
Sbjct: 64  EIEEIILDEFGVEIATFEEQFKKERRKKDFSDVSDDVVCEFLSKRTFFIYKLETIFRNRL 123

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
             E+ L+++++L+  +I V++QME TGI+ID+    +   E+ + 
Sbjct: 124 QNEQFLNIFDKLESRLIPVLAQMEETGIKIDKKYFSEFHNELEEK 168


>gi|45188230|ref|NP_984453.1| ADR357Cp [Ashbya gossypii ATCC 10895]
 gi|44983074|gb|AAS52277.1| ADR357Cp [Ashbya gossypii ATCC 10895]
          Length = 1131

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 91/281 (32%), Gaps = 42/281 (14%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           + +   +        T+T R         +      +G +++   ++P     + AD   
Sbjct: 625 DDQVGAIIPKIIPMGTVTRRAVENTWLTASNAKANRIGSELKTKIVAPEGYSFVGADVDS 684

Query: 753 IELRILAHIA------------KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
            EL I + I                 L    +   D+H   A+ I G          R  
Sbjct: 685 EELWIASLIGDSVFNIHGGTAIGYMCLEGTKDAGTDMHTKTAS-ILGC--------SRNE 735

Query: 801 AKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           AK  N+  IYG      A  L+     +   +     +R +    G   Y  K       
Sbjct: 736 AKIFNYGRIYGAGVRFAAQLLKQFNPTLSEEQTRATAERLYEATKG-KTYHSKIFKKFWF 794

Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINER---------------AAINAPIQGSAADIT 900
            G    +F +  H  E + P++ +                     + IN  IQ S  D  
Sbjct: 795 GGSESILFNKLEHIAEQDQPRTPVLGAGITVSLLKRNLGKDTFLPSRINWAIQSSGVDYL 854

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
                S+H  +E ++L  ++ + IHDEL + V  E+    +
Sbjct: 855 HLLFCSMHYLIEKYRLRARVCISIHDELRYLVANEDRYRVA 895


>gi|332672359|ref|YP_004421603.1| putative RNaseH [Campylobacter phage NCTC12673]
 gi|327493536|gb|AEA86395.1| putative RNaseH [Campylobacter phage NCTC12673]
          Length = 341

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 122/343 (35%), Gaps = 75/343 (21%)

Query: 7   LFLVDGSSFIYRA---------FYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
           + L+D     +++         +    L   K+ G+ V+ I  +     KL+Q       
Sbjct: 1   MVLIDFMHLAFKSLYVAVGKDMYSKQKLSFEKYHGMFVHLIFNYL----KLIQTEYARDY 56

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIP------EMLLPQLPLVRLATQAFGIPAIE 111
            +   +     + ++R   YP+YK NR          E+      ++ +  ++     + 
Sbjct: 57  GNEIILAL-EGSNSWRKSYYPEYKTNRKLSDVFDWENEVFPAVNEIIDVIKKSLPYKVLR 115

Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL-VSPTTCLYDTVKEEKIDIEHVIK 170
           ++G E DDIIA       K    V ++S DKD MQL ++    L+  +K+E       I+
Sbjct: 116 VKGAEGDDIIAVLANHTAK---PVLVVSEDKDFMQLLINKHITLFKPIKKEFF---RNIE 169

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGI-PGIG-YKTAALLLQEYG---------------- 212
           +  I     + +  L GD  DNIP I  G          L+  G                
Sbjct: 170 ESEITKT--LTMHILLGDKADNIPSIMEGTTFTPDFIKFLETNGIFETDVNNFNKLEISK 227

Query: 213 NLENIL-----------INASRIKQKKRRENILEYAETARL-------SRKLVMLRTDVP 254
            L ++                 +  KK  EN+ E  E  +L       ++ L+  R    
Sbjct: 228 TLYDLYSKQSEKSPFKPAYFGEVGAKKFSENLNENLEKNKLVYDNFIRNKTLIDFR---E 284

Query: 255 ITIPLEHLILEDCNGPR-------LISFLKALEFTKLINRVAT 290
           I   ++  I+E  N  +       L+ F       K  + +A+
Sbjct: 285 IPDNIKESIIEQYNLEKPTIDLNNLLKFFLKYNCKKHSDSIAS 327


>gi|148747811|ref|YP_001285777.1| DNA polymerase [Phormidium phage Pf-WMP3]
 gi|146230044|gb|ABQ12452.1| DNA polymerase [Phormidium phage Pf-WMP3]
          Length = 363

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 127/374 (33%), Gaps = 65/374 (17%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
               I +D + A +           D              D  ++ + D    +   +E+
Sbjct: 10  VVLDIESDDLSAQY-----------DVDTRVYLIGVQFLADYGLYAAGDYVYGSL--EEM 56

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS-HDIASI 508
                    +     + HN  +D   L   GI ++ +    + ++      S  + + S+
Sbjct: 57  RDLCVSLANDTDVTFVIHNASFDVPALRLRGIPIKRYFCTQVAAHTWHPKSSEENSLDSL 116

Query: 509 AQKWLSYTRK-----EILKSRKSSIPIDKISD----------SQVQEHAIENSNVILQLW 553
               L    +       LK +          D               + + +     +L+
Sbjct: 117 TGMKLDLRAELEVYRPDLKGKPKGYEYRLYDDKSHRGWSTVNDIFHSYLVSDLQATGKLY 176

Query: 554 LLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
             L       E+ L     +++P ++++ +    G  +D D + +V +++          
Sbjct: 177 TTLEDNFSSDERALRCLLDINQPYVELIIE-FEQGSWVDVDRVDEVQSKLQTLRDEAWSE 235

Query: 613 I-----YDLSGEK----------------------FNLSSPKQLGDIL-FTKLKFPSGAK 644
           I     YD++  K                      FN  S  Q+   L +     P+   
Sbjct: 236 ITTHIRYDVTEIKRYKNGYKKRNGVVTYDHCPLVDFNPGSSDQVAAALTYLYGWEPTKLS 295

Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704
            KTG+  T+++ LE++N    P++ +++++++++K+            N     +   Y+
Sbjct: 296 DKTGKPSTSSEVLEELN---YPLVSSLVKYQKMAKLMQFIPQI---QANLDGNILRPSYN 349

Query: 705 LASTMTGRLASLEP 718
            ++T T RL+S +P
Sbjct: 350 QSATRTTRLSSSKP 363


>gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
 gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
          Length = 239

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 53/222 (23%)

Query: 768 YQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGISPFRL----ATQL 821
            +VF+ + DI+   A+ +F V +EK  V+  +R+  K    ++ YG S   L    A   
Sbjct: 1   MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIGALDT 60

Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKT----KNFVRQNGYVETIFGRRIHYDEI----- 872
            +   E    +  +    P I ++        K  ++Q    ET   R ++ + I     
Sbjct: 61  GLSEDELQPLVDSWRASNPNIVQFWWDVDRCVKTAIKQRTATETHGIRFVYQNGILFIVL 120

Query: 873 -----------------------------NSPKSSIRNINERAAINAPIQGSAADITRRA 903
                                         + K           +   +Q  + DI   +
Sbjct: 121 PSGRRLCYVKPKIGENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHS 180

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVP-EEEITTASQII 944
           M ++            ++  +HDEL+ E P + ++T   + I
Sbjct: 181 MRTLS--------HCFIVGHVHDELIIETPMDADLTAICEQI 214


>gi|83772845|dbj|BAE62973.1| unnamed protein product [Aspergillus oryzae]
          Length = 1017

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 93/294 (31%), Gaps = 44/294 (14%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           RT  +        T+T R         +   +  +G +++    +PP    + AD    E
Sbjct: 658 RTGFILPQVIPMGTITRRAVENTWLTASNAKENRVGSELKAMIKAPPGYVFVGADVDSQE 717

Query: 755 LRILAHIA------------KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           L I + I                 L        D+H   A +I G+         R  AK
Sbjct: 718 LWIASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-KILGI--------SRNDAK 768

Query: 803 TINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
             N+  IYG      A+ LR     +   +  +   + +    G         +     G
Sbjct: 769 VFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQEVATKLYQETKGARTTRRILSDSPFWRG 828

Query: 858 YVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITR 901
             E+             R     + +        +   R     + IN  IQ S  D   
Sbjct: 829 GTESFVFNKLEEFADQERPRTPTLGAGITEALMRRFINRGSFMTSRINWAIQSSGVDYLH 888

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI--TTASQIIVHSMEKACL 953
             +I++   +    +A ++ + +HDE+ + V +E+      +  + +   +A  
Sbjct: 889 LLIIAMDYLIRRFNIAARLAITVHDEIRYLVKDEDKYRAALALQVANVWTRAMF 942


>gi|294658573|ref|XP_460911.2| DEHA2F12628p [Debaryomyces hansenii CBS767]
 gi|202953230|emb|CAG89264.2| DEHA2F12628p [Debaryomyces hansenii]
          Length = 1342

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 104/318 (32%), Gaps = 74/318 (23%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
            + +K   T  DS     +K    +        T+T R         +   K  +G +++
Sbjct: 660 HKKNKFFDTKVDSKK---HKDMGIILPKLCSMGTITRRATENTWLTASNSKKNRIGSELK 716

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKIT-----------PLYQVFENSL--DIHRMV 781
               +P     + AD    EL I A +   +            +    + S   D+H   
Sbjct: 717 AMIEAPEGYTFVGADVDSEELWI-ASLVGDSMFEMHGSTALGWMTLEGDKSEKTDLHSKT 775

Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLRIPRSEAADYIKRYFHR 838
           A EI G+         R  AK  N+  IYG       RL  Q     S+           
Sbjct: 776 A-EILGI--------SRNDAKVFNYGRIYGAGVKFATRLLKQCNSSLSDVEA-------- 818

Query: 839 FPGIHEYIEKTKNFVRQNGYVET--IFGRRIHYDEINSPKSSI----------------- 879
                E + KT  + +  G   T     RR+++    S   ++                 
Sbjct: 819 -----ELMAKTL-YAKTKGQTNTSKFLDRRMYHGGTESIMFNMLESIAYQEDPKTPVLGA 872

Query: 880 ------------RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
                       +N    + IN  IQ S  D     ++++   L+  ++  ++++ +HDE
Sbjct: 873 AITDALTIANLNKNNYLTSRINWVIQSSGVDYLHLLIVAMEFLLKKFRIDGRLIITVHDE 932

Query: 928 LVFEVPEEEITTASQIIV 945
           L + V  E+    + ++ 
Sbjct: 933 LRYMVKSEDKYKTALLLQ 950


>gi|70997278|ref|XP_753389.1| DNA polymerase gamma [Aspergillus fumigatus Af293]
 gi|66851025|gb|EAL91351.1| DNA polymerase gamma [Aspergillus fumigatus Af293]
 gi|159126884|gb|EDP52000.1| DNA polymerase gamma [Aspergillus fumigatus A1163]
          Length = 1135

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 85/281 (30%), Gaps = 44/281 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 668 ILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMIKAPPGYVFVGADVDSQELWI- 726

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +           N               D+H   A +I G+         R  AK  N
Sbjct: 727 ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA-QILGI--------SRNDAKVFN 777

Query: 806 FSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           +  IYG      AT LR     +   E  +     +    G               G  E
Sbjct: 778 YGRIYGAGVKFAATLLRQFNPSMSEKETQEVATNLYRETKGTRTTRRILSENPFWRGGTE 837

Query: 861 TI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAM 904
           +             R     + +        +   +     + IN  IQ S  D     +
Sbjct: 838 SFVFNKLEEFADQERPRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLI 897

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           IS+   +    +  ++ + +HDE+ + V EE+   A+  + 
Sbjct: 898 ISMDYLIRRFNIDARLAITVHDEIRYLVKEEDKYRAAMALQ 938


>gi|148709395|gb|EDL41341.1| flap structure specific endonuclease 1, isoform CRA_b [Mus
           musculus]
          Length = 432

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 56/299 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 106 QNEEGETTSHLMG---MFYRTIRMMENGIKPVY---VFDGKPPQLKSGELAKRSERRAEA 159

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP ++    EA+   A  
Sbjct: 160 EKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAAL 218

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E      ++  +  V+++ G+  E+
Sbjct: 219 AK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQ 274

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    I GIG K A  L+Q++ ++E I+      K       + + A+
Sbjct: 275 FVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQ 332

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
              L  ++        +      L   + N   L+ F               + R++ +
Sbjct: 333 QLFLEPEV--------LDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKS 383


>gi|317419778|emb|CBN81814.1| Flap endonuclease 1-B [Dicentrarchus labrax]
          Length = 380

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 89/278 (32%), Gaps = 50/278 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  DG   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEDGETTSHLMG---MFYRTIRMLEHGIKPVY---VFDGKPPQLKSAELEKRGERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            ++L     +                        +      G+P IE    EA+   A  
Sbjct: 108 EKLLAQAQEMGEQENIDKFSKRLVKVTKQHNDDCKKLLTLMGVPYIEAPC-EAEATCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   +     + T  E      ++     +++  G+  E+
Sbjct: 167 VK----AGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEFHFSRMLQDIGLTNEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  L G   D    I GIG K A  L++++G +E IL N    K     + + + A 
Sbjct: 223 FIDLCILLG--CDYCATIKGIGPKRAIDLIRQHGCIEEILENIDPNKHPSPEDWLYKEAR 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
              L  ++V              L   + +   LI F+
Sbjct: 281 RLFLKPEVV--------DCSTVELKWSEPDEDALIQFM 310


>gi|317374875|sp|C3KJE6|FEN1_ANOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|229367576|gb|ACQ58768.1| Flap endonuclease 1-A [Anoplopoma fimbria]
          Length = 380

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 89/278 (32%), Gaps = 50/278 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  DG   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEDGETTSHLMG---MFYRTIRMLEHGIKPVY---VFDGKPPQLKSAELEKRGEKRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            +ML     L                        +      G+P IE    EA+   A  
Sbjct: 108 EKMLAQAQELGEQENIDKFSKRLVKVTKQHNDECKKLLTLMGVPYIEAPC-EAEATCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   +     + T  E      +++    +++  G+  E+
Sbjct: 167 VK----AGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQELHYSRILQDIGLTNEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L        D    I GIG K A  L++++G++E IL N    K     + + + A 
Sbjct: 223 FIDL--CIPLGCDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDSSKHPAPEDWLYKEAR 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
              L  ++V              L   + +   LI F+
Sbjct: 281 GLFLKAEVV--------DCSTVDLKWSEPDEEGLIQFM 310


>gi|170086167|ref|XP_001874307.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651859|gb|EDR16099.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1064

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 111/368 (30%), Gaps = 69/368 (18%)

Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
            GEK N+ SP     I F +         +  +               + I+  ++ W+ 
Sbjct: 541 DGEKANVGSPLGKSFIKFAQDGTMKSPGDEAKEALDMNALCSYWISARDRILNQMVVWQD 600

Query: 677 L-SKIKSTYADSLPNHI-----NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730
             +K+       LP         K+   +        T+T R         +   K  +G
Sbjct: 601 AKNKLG------LPKFSSDEDNGKKWGIILPQVITMGTVTRRAIEKTWLTASNAKKNRVG 654

Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF------------ENSLDIH 778
            +++    +P    ++ AD    EL I + +                          D+H
Sbjct: 655 SELKAMVRAPEGYAIVGADVDSEELWISSCMGDAQFGLHGATAIGWMTLEGTKAAGTDLH 714

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-------------------PFRLAT 819
              A+ I G+         R  AK  N+S IYG                       +LA 
Sbjct: 715 SKTAS-ILGI--------SRDQAKVFNYSRIYGAGMRHAILLLLQSNASMLPEIAQKLAE 765

Query: 820 QLRIPRSEAADYIKRYFHR---FPGIHEYI-EKTKNFVRQN-------GYVETIFGRRIH 868
            L         +    F R   F G   Y+  K +     +       G   T    + +
Sbjct: 766 NLYASTKGKNTHRTDIFERKFWFGGTESYLFNKLEEIALSDKPQTPALGCGVTYALSKEY 825

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
                            + +N  +Q S  D     ++S+   +  + +  + L+ +HDEL
Sbjct: 826 LPAEFGSDYM------PSRVNWVVQSSGVDYLHLLIVSMDHLISKYNINARYLISVHDEL 879

Query: 929 VFEVPEEE 936
            + V EE+
Sbjct: 880 RYLVAEED 887


>gi|269975269|gb|ACZ55493.1| putative DNA polymerase [Staphylococcus phage SA1]
          Length = 910

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 60/401 (14%), Positives = 128/401 (31%), Gaps = 93/401 (23%)

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGR 712
             +  +  + + I ++  L   + T  +S        N I     R+     +  T TGR
Sbjct: 514 SYDTIEGELGQKIAKYYTLMHRRRTIENSKDDEKGWLNQIRPDG-RLSAGAMVFGTSTGR 572

Query: 713 LASLEPNLQNIPIKTD-LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           +   +  + N+P      G  +R  +       +IS D +  +L +L +        +  
Sbjct: 573 M--TQYGIVNVPSGAAVYGAPMREVWTCEDGTDIISVDQNSAQLVLLCNFMGDEDFTKAV 630

Query: 772 ENSL---------------------------------------------DIHRMVAAEIF 786
                                                            D H +  +  F
Sbjct: 631 TEGKESVEFTKQEDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHTL-NSIYF 689

Query: 787 GVNIEKV--------SPQM-------RRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831
           G+N E+           ++       R+ +K   +++++G    + A  ++   +E    
Sbjct: 690 GLNKEEDIVRCRETQDEELLHEITKGRKKSKNGIYALLFGAGDEKFAKTIKASSTEEGAL 749

Query: 832 IKR-YFHRFPGIHEYIEKTKN------FVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
            K+ YF R P I + +++ +          +  + +T    +     I    + +   + 
Sbjct: 750 TKQTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKG--GYIKVAGAWLWCKSP 807

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKL----------ATKMLLQIHDELVFEVPE 934
              +N  + GS A +    +   ++ L + KL            + +   HDE+  EVP 
Sbjct: 808 HKLLNYTLMGSEAQVQNEGINLANRELTERKLTVLNGRKPAIGARWVCSYHDEVSLEVPT 867

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKV--NIKVSNNWQ 973
           +++    +II   M       + L+    V    KV   W 
Sbjct: 868 KDVPDVKEII-DRMYGQASKNLGLKSKTLVTGTGKVGKTWY 907


>gi|318055766|ref|NP_001187811.1| flap endonuclease 1-b [Ictalurus punctatus]
 gi|308324033|gb|ADO29152.1| flap endonuclease 1-b [Ictalurus punctatus]
          Length = 380

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 92/278 (33%), Gaps = 50/278 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  DG   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNDDGETTSHLMG---MFYRTIRMLDSGIKPVY---VFDGKPPQLKSGELEKRGERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            ++L     +                        +      G+P IE    EA+   A  
Sbjct: 108 EKLLAQAQEMGEQENIDKFSKRLVKVTKQHNDECKKLLTLMGVPYIEAPC-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G A    + D D +   +     + T  E      ++     V+++  +  ++
Sbjct: 167 VK----AGKAYATATEDMDGLTFGTSVLLRHLTASEAKKLSIQEFHFSRVLQEMSLSHQQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  L G   D    I GIG K A  L+++YG++E IL N  + K     + + + A 
Sbjct: 223 FIDLCILLG--CDYCGTIKGIGPKRAIDLIKQYGSIEEILDNIDQSKHPAPEDWLYKEAR 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
              L  ++V              L   + +   L+ F+
Sbjct: 281 ALFLEPEVV--------DCTAMELKWNEPDEDGLVQFM 310


>gi|168066677|ref|XP_001785260.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|317374868|sp|A9U328|FEN12_PHYPA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
           Full=Flap structure-specific endonuclease 1-B
 gi|162663130|gb|EDQ49912.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 349

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 28/191 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTY-----IAEKEGFAVTIISTDKDLMQLVSPTT 152
            R   +  G+P +E    EA+   A+            E        + + L  L+ P +
Sbjct: 142 CRKLLRLMGVPVVEAPS-EAEAECASLCKTGKVYAVASEDMDSLTFGSTRFLRHLMEPVS 200

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                +   + D+  V++   +  ++ V L  L G   D I  I GIG +TA  L++++G
Sbjct: 201 RKLPVM---EFDMNKVLEGLSLTMDQFVDLCILCG--CDYIDTIRGIGAQTALKLIRQHG 255

Query: 213 NLENILINASR----IKQKKRRENILEYAETARLSRK-LVMLRTDVPITIPLEHLILEDC 267
           +LE IL N ++    I           Y E  RL ++ LV    DVP             
Sbjct: 256 SLEKILENLNKDRYQIPDPWP------YEEARRLFKEPLVTQAEDVP------DFKWTAP 303

Query: 268 NGPRLISFLKA 278
           +   LI FL  
Sbjct: 304 DAEGLIKFLVE 314


>gi|239613015|gb|EEQ90002.1| DNA polymerase gamma [Ajellomyces dermatitidis ER-3]
 gi|327356950|gb|EGE85807.1| DNA polymerase gamma [Ajellomyces dermatitidis ATCC 18188]
          Length = 1146

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 120/388 (30%), Gaps = 55/388 (14%)

Query: 598 VSAEISKNLLSLEENIY----DLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWKT 652
           ++ E + +L    E+IY       G +   +SP   G +  F   K  S         + 
Sbjct: 567 MAEEKNLSLRDDREHIYFKLPHKDGPEARCTSPLAKGYLQYFEGGKLSSQFALAKEALEM 626

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A     I+  D    + ++    + ++K+    + P+    +   +        T+T R
Sbjct: 627 NASCSYWISARDRIRSQLVVYHNDVERLKNKSISN-PSF---KQGYILPQIIPMGTITRR 682

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                    +      +G +++    +PP    + AD    EL I A +           
Sbjct: 683 AVENTWLTASNAKANRVGSELKAMVTAPPGYVFVGADVDSEELWI-ASLVGDAQFQIHGG 741

Query: 773 N-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFR 816
           N               D+H   A +I G+         R  AK  N+  IYG        
Sbjct: 742 NAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNDAKVFNYGRIYGAGLKFAAT 792

Query: 817 LATQLR--IPRSEAADYIKRYFHRFPGIHE-----------------YIEKTKNFVRQNG 857
           L  Q    +   E      + +    G+                   ++        +  
Sbjct: 793 LLRQFNPSMSEHETKQVAAKLYKETKGVRTNRKILSDNPFWRGGTESFVFNKLEEFAEQE 852

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
              T        + +   +   +     + IN  IQ S  D     +IS+   +    L 
Sbjct: 853 RPRTPVLGAGITEALM-RRFINKGSFMTSRINWAIQSSGVDYLHLLIISMDFLIRRFNLD 911

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIV 945
            ++ + +HDE+ + V E +   A+  + 
Sbjct: 912 ARLAITVHDEIRYLVKEHDKYRAAMALQ 939


>gi|289617399|emb|CBI55887.1| unnamed protein product [Sordaria macrospora]
          Length = 1509

 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 74/488 (15%), Positives = 140/488 (28%), Gaps = 85/488 (17%)

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV----------EKL 565
             K+++     ++ +  +   + +     +  V L +   + P L+              
Sbjct: 500 WYKDLIPKIPKNLSVIDLPGKEHENRKARHEFVNLTVRTRVAPLLLKLSWEGYPLFWSDQ 559

Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLL-KQVSAEISKNLLSLEENIYDLSGEKFNLS 624
                R+ +       Q ++T I+ D   L +++  +       L        G     +
Sbjct: 560 YGWTFRVPRGEAATFIQRQMTPIEFDDPDLDERLRVDFDHRYFKLPHK----DGPTARCA 615

Query: 625 SPKQLGDI-LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +P   G +  F K    S         +  A     I+  +           ++      
Sbjct: 616 NPMAKGYLAYFEKGILSSEYPYAKEALEMNASCSYWISARE-----------RIKNQMVV 664

Query: 684 YADSLP-------NHINKRTQ---RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733
           Y D LP          +  T     +        T+T R         +   K  +G ++
Sbjct: 665 YEDKLPPSQRFATKGADDDTPVGGFILPQLIPMGTITRRAVERTWLTASNAKKNRVGSEL 724

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-------------SLDIHRM 780
           +    +PP    + AD    EL I A +           N               D+H  
Sbjct: 725 KAMVRAPPGYVFVGADVDSEELWI-ASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSR 783

Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF-------------------RLATQL 821
            AA I G+         R  AK  N+  IYG                        +AT+L
Sbjct: 784 TAA-ILGIT--------RNDAKVFNYGRIYGAGLKFASQLLRQFNPSLTEAETITIATKL 834

Query: 822 RIPRSEAADYIKRYFHRFPGIH----EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
                 A    K  + R P        ++        +     T        + + S   
Sbjct: 835 YDATKGAKTNRKSLYKR-PFWRGGTESFVFNMLEEFAEQERPRTPVLGAGITEALMSR-W 892

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937
             +     + IN  IQ S  D     +I++        LA ++ + +HDE+ +   E + 
Sbjct: 893 VSKGGFLTSRINWAIQSSGVDYLHLLIIAMDYLTRRFNLACRLTITVHDEIRYLAEEHDK 952

Query: 938 TTASQIIV 945
              +  + 
Sbjct: 953 YRVAMALQ 960


>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
 gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
          Length = 409

 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 84/217 (38%), Gaps = 29/217 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I + + + + V++L T  + +F +  D++  +  K   I +ST                
Sbjct: 38  IIEDQQALNRLVERLNTETTLAFDLEADSLHHYTEKVCLIQVST---------------- 81

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                 + ++   + L    LS L     N    K+ H   YD   L+R +G  +R   D
Sbjct: 82  ------NSETALIDPLAPLDLSPLAPILANPAVRKVFHGADYDMRSLYRDFGFEVRNLFD 135

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            M+ S  L           +A         E+ K  + +    +    Q+ E+A++++++
Sbjct: 136 TMIASQFLGEKEVG-----LAAALKKRFGVELDKKYQKADWSKRPFSPQMIEYAMKDTSL 190

Query: 549 ILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQME 584
           +++L+L L  +L  +  L  V E  +       +  +
Sbjct: 191 LIKLYLQLEDELRAKGRLAWVEEESEIVSCVRAASRD 227


>gi|118405170|ref|NP_001072959.1| flap endonuclease 1 [Gallus gallus]
 gi|82082625|sp|Q5ZLN4|FEN1_CHICK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|53129083|emb|CAG31359.1| hypothetical protein RCJMB04_5g12 [Gallus gallus]
          Length = 381

 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 107/343 (31%), Gaps = 58/343 (16%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEEGETTSHLMG---MFYRTIRMVENGIKPVY---VFDGKPPQLKSGELAKRTERRSEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP +E  G EA+   AT 
Sbjct: 108 EKHLQEAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPG-EAEASCATL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E      ++  +  V++  G+  E+
Sbjct: 167 VK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    I GIG K A  L++++  +E I+ +    K       + + A+
Sbjct: 223 FVDLCILLG--CDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQ 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATTY 292
              L         DV I      L   + N   L+ F               + R++ + 
Sbjct: 281 KLFL-------EPDV-INPDDVELKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSR 332

Query: 293 --DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
                    +   +  + T  K    ET+       KT+  ++
Sbjct: 333 QGSTQGRLDDFFKVTGSITSAKRKEPETKGSAKKKAKTNSATA 375


>gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 217

 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 19/198 (9%)

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
           T         +   GS +    T  ++    +   + +S  D    T+  V+ I   L  
Sbjct: 11  TLHRNDLPDNVTFTGSVAVDTETMGLNPHRDRLCLVQLSAGDG---TAHLVQIIPTSLGG 67

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
                              LK+   +    KI H  ++D  +L H  GI++       + 
Sbjct: 68  KGYDCPN------------LKRVLADPSITKIMHFARFDVAILQHALGITVSPVVCTKIA 115

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           + ++ +    H +A++ +  L     E+ K +++S    K    +   +A  +   +  L
Sbjct: 116 ARLVRTFTDRHGLAALCRDMLGV---ELSKQQQTSDWGAKELKPEQLAYAASDVLYLHAL 172

Query: 553 WLLLRPKLIVEKLLHVYE 570
           W  +   L  E    + +
Sbjct: 173 WDKMSALLDREGRRELAQ 190


>gi|15778123|dbj|BAB68507.1| FEN-1 nuclease [Gallus gallus]
          Length = 381

 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 107/343 (31%), Gaps = 58/343 (16%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEEGETTSHLMG---MFYRTIRMVENGIKPVY---VFDGKPPQLKSGELAKRTERRSEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP +E  G EA+   AT 
Sbjct: 108 EKHLQEAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPG-EAEASCATL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E      ++  +  V++  G+  E+
Sbjct: 167 VK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    I GIG K A  L++++  +E I+ +    K       + + A+
Sbjct: 223 FVDLCILLG--CDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQ 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATTY 292
              L         DV I      L   + N   L+ F               + R++ + 
Sbjct: 281 KLFL-------EPDV-INPDDVELKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSR 332

Query: 293 --DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
                    +   +  + T  K    ET+       KT+  ++
Sbjct: 333 QGSTQGRLDDFFKVTGSITSAKRKEPETKGSAKKKAKTNSATA 375


>gi|302652096|ref|XP_003017908.1| hypothetical protein TRV_08074 [Trichophyton verrucosum HKI 0517]
 gi|291181493|gb|EFE37263.1| hypothetical protein TRV_08074 [Trichophyton verrucosum HKI 0517]
          Length = 1137

 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 65/390 (16%), Positives = 119/390 (30%), Gaps = 56/390 (14%)

Query: 597 QVSAEISKNLLSLEENIY----DLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWK 651
            +S E +  L    E++Y       G     +SP   G +  F   K  S         +
Sbjct: 565 DMSEETNAALRESREHVYFKLPHKDGPDARCASPLSKGYLQYFESGKLSSQFPLAKEALE 624

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ--RVHTFYSLASTM 709
             A     I+  D    + ++  + L K       +L   ++  ++   +        T+
Sbjct: 625 MNASCSYWISARDRITSQMVVYKKDLEK-----TGALCKELSPDSKVGFILPQVIPMGTI 679

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           T R         +      +G +++    +PP    + AD    EL I A +        
Sbjct: 680 TRRAVENTWLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASLVGDAQFQL 738

Query: 770 VFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS--- 813
              N               D+H   A +I G+         R +AK  N+  IYG     
Sbjct: 739 HGGNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNYAKVFNYGRIYGAGLKF 789

Query: 814 PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI--------- 862
              L  Q    +  +E      + +    G               G  E+          
Sbjct: 790 AATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVFNKLEEFA 849

Query: 863 FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
              R     + +        +   +     + IN  IQ S  D     +IS+   +    
Sbjct: 850 EQERPRTPVLGAGITEALMRRFINKGGFMTSRINWAIQSSGVDYLHLLIISMDYLIRRFN 909

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIV 945
           L  ++ + +HDE+ + V E +   A+  + 
Sbjct: 910 LDARLAITVHDEIRYVVRETDKYKAAMALQ 939


>gi|261189615|ref|XP_002621218.1| DNA polymerase gamma [Ajellomyces dermatitidis SLH14081]
 gi|239591454|gb|EEQ74035.1| DNA polymerase gamma [Ajellomyces dermatitidis SLH14081]
          Length = 1126

 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 120/388 (30%), Gaps = 55/388 (14%)

Query: 598 VSAEISKNLLSLEENIY----DLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWKT 652
           ++ E + +L    E+IY       G +   +SP   G +  F   K  S         + 
Sbjct: 547 MAEEKNLSLRDDREHIYFKLPHKDGPEARCTSPLAKGYLQYFEGGKLSSQFALAKEALEM 606

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
            A     I+  D    + ++    + ++K+    + P+    +   +        T+T R
Sbjct: 607 NASCSYWISARDRIRSQLVVYHNDVERLKNKSISN-PSF---KQGYILPQIIPMGTITRR 662

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                    +      +G +++    +PP    + AD    EL I A +           
Sbjct: 663 AVENTWLTASNAKANRVGSELKAMVTAPPGYVFVGADVDSEELWI-ASLVGDAQFQIHGG 721

Query: 773 N-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFR 816
           N               D+H   A +I G+         R  AK  N+  IYG        
Sbjct: 722 NAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNDAKVFNYGRIYGAGLKFAAT 772

Query: 817 LATQLR--IPRSEAADYIKRYFHRFPGIHE-----------------YIEKTKNFVRQNG 857
           L  Q    +   E      + +    G+                   ++        +  
Sbjct: 773 LLRQFNPSMSEHETKQVAAKLYKETKGVRTNRKILSDNPFWRGGTESFVFNKLEEFAEQE 832

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
              T        + +   +   +     + IN  IQ S  D     +IS+   +    L 
Sbjct: 833 RPRTPVLGAGITEALM-RRFINKGSFMTSRINWAIQSSGVDYLHLLIISMDFLIRRFNLD 891

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIV 945
            ++ + +HDE+ + V E +   A+  + 
Sbjct: 892 ARLAITVHDEIRYLVKEHDKYRAAMALQ 919


>gi|258577255|ref|XP_002542809.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
 gi|237903075|gb|EEP77476.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
          Length = 1143

 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 111/331 (33%), Gaps = 40/331 (12%)

Query: 64   IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             FD      R +     K +R    E+    +   +   + FG+P I     EA+   A 
Sbjct: 790  AFDRELKQLRAQQ----KKDRRDADEVSHIMVTECQQLLKLFGLPYITAP-MEAEAQCAE 844

Query: 124  YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEK 178
               +   +G    I++ D D    +   T +Y  +       E   +  + K++ +  +K
Sbjct: 845  LVSLGLVDG----IVTDDSDTF--LFGGTRVYKNMFNQAKFVECYLVSDLEKEYSLDRKK 898

Query: 179  MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---------KR 229
            ++    L G   D   GIPGIG  TA  +L E+ +LE+     S+++           K 
Sbjct: 899  LISFAHLLG--SDYTEGIPGIGPVTALEILTEFSDLEDFKDWWSQVQMGVSIPDDVHSKF 956

Query: 230  RENILEYAETARL-----SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284
            R+   + A    L      R++     +  +            +   L  F        L
Sbjct: 957  RKKFKKNAAKLFLPPAFPDRRVDAAYLEPEVDSDPSAFQWGVPDLEALRHF--------L 1008

Query: 285  INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
            +  V  + +     + PV+ D+N  E +G         + +     F+       +   E
Sbjct: 1009 MTAVGWSPERTDEVLVPVIRDVNRRELEGTQANITQFFEGSQGAGAFAPQRRTGGQSRME 1068

Query: 345  QTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
            +   +L  E   K       + S   I    
Sbjct: 1069 KAFTRLRDETAAKRKADDAGSTSVPTIEIED 1099


>gi|255953429|ref|XP_002567467.1| Pc21g04210 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589178|emb|CAP95318.1| Pc21g04210 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1142

 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 89/290 (30%), Gaps = 44/290 (15%)

Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
              + R   +        T+T R         +      +G +++    +PP    + AD
Sbjct: 659 KASDNRVGFILPQVIPMGTITRRAVENTWLTASNAKANRVGSELKAMIKAPPGYSFVGAD 718

Query: 750 YSQIELRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQ 796
               EL I A +           N               D+H   A+ I G+        
Sbjct: 719 VDSQELWI-ASLVGDASFQIHGGNAIGFMCLEGSKAEGTDLHSRSAS-ILGI-------- 768

Query: 797 MRRHAKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            R  AK  N+  IYG      AT LR     +   +  +  K  +    G          
Sbjct: 769 SRNDAKVFNYGRIYGAGVKFAATLLRQFNPSLTEKQTQETAKNLYKETKGTRTSRRLLSE 828

Query: 852 FVRQNGYVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGS 895
                G  E+             R     + +        +   +     + IN  IQ S
Sbjct: 829 TPFWRGGTESFVFNKLEEFADQERPRTPALGAGITEALMRRFINKGSFMTSRINWAIQSS 888

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
             D     ++S+   +  + +  ++ + +HDE+ + V +E+   A+  + 
Sbjct: 889 GVDYLHLLIVSMDYLIRQYNIKARLAITVHDEIRYLVKDEDRYRAAMALQ 938


>gi|215509404|gb|EEC18857.1| DNA polymerase gamma, putative [Ixodes scapularis]
          Length = 1055

 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 130/385 (33%), Gaps = 66/385 (17%)

Query: 622 NLSSPKQLGDILFTK--------LKFPSGAKTKTGQWKTTAQDLEQ------INCGDNPI 667
           N + P Q+ + L            + P             A+D         +  GDNP 
Sbjct: 583 NRTRPPQVKENLDMDVDIDGCYFFRLPHKDGPHKRVGNPLAKDFLTKVTDGILQAGDNPQ 642

Query: 668 IKNILEWRQL-------------SKIKSTYADSLPNHINKRTQ----RVHTFYSLASTMT 710
              +L   ++               +       LP  I+ R       +      A T+T
Sbjct: 643 ANRVLLLSKIISYWKNARDRIASQMVVWFTKSDLPEIIHDRDSSDYGVILPRLIPAGTVT 702

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKIT 765
            R         +   K  +G +++    +P    ++ AD    EL I      AH A++ 
Sbjct: 703 RRAVEPTWLTASNAYKDRVGSELKSMVQAPKGYHIVGADVDSQELWIASILADAHFAEMH 762

Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR----LATQ 820
               +   +L  ++ V  ++       V    R  AK IN++ IYG   PF     +   
Sbjct: 763 GCTAIGWMTLQGNKAVGTDMHSRTATSVGI-SRDQAKVINYARIYGAGQPFAQRLLMQFN 821

Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKN----------FVRQNGYVETIFGRRIHYD 870
            R+   EA+   K+ + +  G+   + +              V + G    +F +     
Sbjct: 822 HRLDAQEASTKAKKMYAQTKGVRVAVPEVVEGQQVFVRGKRKVWEGGSESHMFNKLEAIA 881

Query: 871 EINSPKSSIRNIN--------------ERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
           +   P++ +                    + IN  +Q SA D     +I++   ++D+ +
Sbjct: 882 DSEEPRTPVLGCRISRALEPAAVDTNFFNSRINWVVQSSAVDYLHLMLITMRWLMDDYAI 941

Query: 917 ATKMLLQIHDELVFEVPEEEITTAS 941
             +  + IHDE+ F V  E+   A+
Sbjct: 942 QGRFAVSIHDEVRFLVASEDRYRAA 966


>gi|121713882|ref|XP_001274552.1| DNA polymerase gamma [Aspergillus clavatus NRRL 1]
 gi|119402705|gb|EAW13126.1| DNA polymerase gamma [Aspergillus clavatus NRRL 1]
          Length = 1134

 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 84/281 (29%), Gaps = 44/281 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 668 ILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMIKAPPGYVFVGADVDSQELWI- 726

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +           N               D+H   A  I G+         R  AK  N
Sbjct: 727 ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA-HILGI--------SRNDAKVFN 777

Query: 806 FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           +  IYG        L  Q    +   E  +   + +    G               G  E
Sbjct: 778 YGRIYGAGLKFAATLLRQFNPSMSEKETQEVASKLYKETKGARTSRRILSENPFWRGGTE 837

Query: 861 TI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAM 904
           +             R     + +        +   +     + IN  IQ S  D     +
Sbjct: 838 SFVFNKLEEFAEQERPRTPALGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLI 897

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           I++   +  + +  ++ + +HDE+ + V EE+   A+  + 
Sbjct: 898 IAMDYIIRRYNIGARLAITVHDEIRYLVKEEDKYRAAMALQ 938


>gi|302497375|ref|XP_003010688.1| hypothetical protein ARB_03390 [Arthroderma benhamiae CBS 112371]
 gi|291174231|gb|EFE30048.1| hypothetical protein ARB_03390 [Arthroderma benhamiae CBS 112371]
          Length = 1138

 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 119/388 (30%), Gaps = 52/388 (13%)

Query: 597 QVSAEISKNLLSLEENIY----DLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWK 651
            +S E +  L    +++Y       G     +SP   G +  F   K  S         +
Sbjct: 566 DMSEETNAALRESRDHVYFKLPHKDGPDARCASPLSKGYLQYFESGKLSSQFPLAKEALE 625

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
             A     I+  D  I   ++ +++  +   T    L   ++ +   +        T+T 
Sbjct: 626 MNASCSYWISARDR-ITSQMVVYKKDLEKTGTLGKGL--SLDSKVGFILPQVIPMGTITR 682

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R         +      +G +++    +PP    + AD    EL I A +          
Sbjct: 683 RAVENTWLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASLVGDAQFQLHG 741

Query: 772 EN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PF 815
            N               D+H   A +I G+         R +AK  N+  IYG       
Sbjct: 742 GNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNNAKVFNYGRIYGAGLKFAA 792

Query: 816 RLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI---------FG 864
            L  Q    +  +E      + +    G               G  E+            
Sbjct: 793 TLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVFNKLEEFAEQ 852

Query: 865 RRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
            R     + +        +   +     + IN  IQ S  D     +IS+   +    L 
Sbjct: 853 ERPRTPVLGAGITEALMRRFINKGGFMTSRINWAIQSSGVDYLHLLIISMDYLIRRFNLD 912

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIV 945
            ++ + +HDE+ + V E +   A+  + 
Sbjct: 913 ARLAITVHDEIRYVVRETDKYKAAMALQ 940


>gi|226478114|emb|CAX72750.1| Flap endonuclease 1 [Schistosoma japonicum]
          Length = 389

 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 23/186 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   +  G+P +   G EA+   A            V  + + D D +   +P    + 
Sbjct: 141 CKQLLRLMGVPFVNAPG-EAEAQCAALAK-----SGKVYAVGTEDMDALAFGTPVLLRHL 194

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E      ++ ++  V++   +  ++ V L  L G   D +  I GIG K A  LL +
Sbjct: 195 TFSEARKMAIQEFNLASVLEGLSLTMDQFVDLCILLG--CDYVDTIRGIGPKKALDLLHK 252

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           Y +++ +L N  + K     +   E A+   L+ ++            L  L  ++ +  
Sbjct: 253 YHSIDCVLKNIDKSKYPVPNDWPYEDAKKLFLNPEVT--------DPSLIELKWDEPDEE 304

Query: 271 RLISFL 276
            L+ FL
Sbjct: 305 GLVEFL 310


>gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae]
 gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 70/209 (33%), Gaps = 41/209 (19%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            Q    D  I + + E   +     T       +L   ++   +   T     ++ TGR 
Sbjct: 7   LQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRW 66

Query: 714 ASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTKKLI 746
           A       N+P  T   + I                           R   I+P  KKL+
Sbjct: 67  AGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQGKKLV 126

Query: 747 SADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            +D S IE R+LA +A      + F         D++++  A  F +  E V+   R+  
Sbjct: 127 ISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPENVTKAQRQIG 186

Query: 802 KTINFSIIYGISP-----FRLATQLRIPR 825
           K +   + YG        F LA  L +  
Sbjct: 187 KVMELGLGYGGGVAAFLTFALAYGLDLDE 215


>gi|219681348|ref|YP_002456112.1| putative DNA polymerase [Erwinia phage phiEa21-4]
 gi|199580615|gb|ACH89002.1| putative DNA polymerase [Erwinia phage phiEa21-4]
          Length = 896

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 118/391 (30%), Gaps = 87/391 (22%)

Query: 669 KNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           +NI ++  L   + T  +         N +     R+    ++  T TGR+      +  
Sbjct: 510 QNIAKYNTLQHRRRTLENPKHDEKGWLNMVRADG-RMSAGATVFGTSTGRMTQWGI-VNT 567

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI------------------ 764
                  G ++R  +       +IS D +  +L +L +                      
Sbjct: 568 PSSAAVYGAQMREVWGCEEGTSVISVDMNSAQLVLLCNFMGDPDFTYAVTKGKEDVEFKR 627

Query: 765 ---------------TPLYQVFEN------------SLDIHRM--------------VAA 783
                           P+   + N              D H                 A 
Sbjct: 628 TEDGRYYCSKLDKYLDPMIDKYLNYDEENDLYVVYTGTDAHSFNSIQFTLNEESDIITAR 687

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI-PRSEAADYIKRYFHRFPGI 842
                ++       R+ AK   + +++G    + A  +++    E A   + YF R P I
Sbjct: 688 ATQDEDLIHKISNGRKKAKNGIYCLLFGGGDEKFAKTIKVKTTEEGARIKQTYFTRLPKI 747

Query: 843 HEYIEKTKNFVRQN----GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
              +++ ++  +      G V            I    + +   +    +N  + GS A 
Sbjct: 748 KALLDRLEDEFKATKKALGQVFGKTHPICKGGFITVAGAYLWCNSPHKILNYLLMGSEAQ 807

Query: 899 ITRRAMISVHKSLEDHKL----------ATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           +   A+    + + D  L            ++L   HDE  +EVP E +  A  +I   M
Sbjct: 808 VQNEAVNWACRQMLDKGLMKLNGRKPAIGARLLCAYHDENSWEVPNEMVHDAKAVI-DEM 866

Query: 949 EKACLPKINLRVP--LKVNIK-VSNNWQEEN 976
                  + L +P  L      V  NW + +
Sbjct: 867 YGTASKALGL-LPETLVTGTGKVGKNWLDVH 896


>gi|126344550|ref|XP_001362314.1| PREDICTED: similar to Flap structure specific endonuclease 1
           [Monodelphis domestica]
          Length = 380

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 96/302 (31%), Gaps = 56/302 (18%)

Query: 25  LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR 84
            + +  +G   + + G   M ++ ++         +   +FD      ++         R
Sbjct: 51  DMLQNEEGEATSHLVG---MFYRTIRMVENGIKPVY---VFDGKPPQLKSGELAKRGERR 104

Query: 85  PKIPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDII 121
            +    L   L                          +   +  GIP +E  G EA+   
Sbjct: 105 AEAERQLQQALDAGAQEEADKFSKRLVKVTKEHNDECKQLLRLMGIPYLEAPG-EAEASC 163

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIP 175
           A         G      + D D +   SP    + T  E      ++  +  V++  G+ 
Sbjct: 164 AALAK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQGLGLT 219

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            E+ V L  L G   D    I GIG K A  L+Q++ ++E I+      K       + +
Sbjct: 220 QEQFVDLCILLG--SDYCESIRGIGPKRAIDLIQQHKSIEEIIRKLDPSKYPVPENWLHK 277

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVA 289
            A+   L         DV + +    L   + +   L+ F               + R++
Sbjct: 278 EAQHLFL-------EPDV-LDVNTVELKWGEPDEEGLVQFMCGEKQFNEDRVRNGVRRLS 329

Query: 290 TT 291
            +
Sbjct: 330 KS 331


>gi|26345786|dbj|BAC36544.1| unnamed protein product [Mus musculus]
          Length = 411

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 56/299 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEEGETTSHLMG---MFYRTIRMMENGIKPVY---VFDGKPPQLKSGELAKRSERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP ++    EA+   A  
Sbjct: 108 EKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E      ++  +  V+++ G+  E+
Sbjct: 167 AK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    I GIG K A  L+Q++ ++E I+      K       + + A+
Sbjct: 223 FVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQ 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
              L  ++        +      L   + N   L+ F               + R++ +
Sbjct: 281 QLFLEPEV--------LDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKS 331


>gi|2494181|sp|Q01941|DPOG_PICPA RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|1236527|gb|AAB17118.1| DNA polymerase gamma [Pichia pastoris]
          Length = 1012

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 105/313 (33%), Gaps = 46/313 (14%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHI---NKRTQRVHTFYSLASTMTGRLASLEPNL 720
             P+ K+ L+    S   ++  + + N           +        T+T R        
Sbjct: 575 QYPLAKDALQMAVASSYWTSSRERIMNQFVVFEDDMGYILPQIIPMGTITRRAVENTWLT 634

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVF----- 771
            +   K  LG +++    +P     + AD    EL I + I     KI     +      
Sbjct: 635 ASNAKKNRLGSELKSLIEAPKGYCFVGADVDSEELWIASLIGDSVFKIHGGTAIGWMTLE 694

Query: 772 ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-----I 823
                  D+H   A +I G+         R  AK  N+  IYG       T L+     +
Sbjct: 695 GTKNEGTDLHSKTA-KILGI--------SRNEAKIFNYGRIYGAGIKFTTTLLKKFNPAL 745

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
             +EA       +    GI    +  K  +   G    IF R     E+  PK+ +    
Sbjct: 746 SDAEAKATANALYTATKGISGRYD--KKSIWYGGSESIIFNRLEAIAEMAHPKTPVLGAG 803

Query: 884 ERAAI---------------NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             A +               N  IQ S  D     +IS+   ++   +  ++ + +HDE+
Sbjct: 804 ITAPLQKANLSTNNFLTSRINWAIQSSGVDYLHLLIISMDYLIKLFDIDARLCITVHDEI 863

Query: 929 VFEVPEEEITTAS 941
            + V EE+   A+
Sbjct: 864 RYLVKEEDKFRAA 876


>gi|254571647|ref|XP_002492933.1| DNA polymerase gamma [Pichia pastoris GS115]
 gi|238032731|emb|CAY70754.1| DNA polymerase gamma [Pichia pastoris GS115]
 gi|328353057|emb|CCA39455.1| DNA polymerase gamma 1 [Pichia pastoris CBS 7435]
          Length = 1012

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 105/313 (33%), Gaps = 46/313 (14%)

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHI---NKRTQRVHTFYSLASTMTGRLASLEPNL 720
             P+ K+ L+    S   ++  + + N           +        T+T R        
Sbjct: 575 QYPLAKDALQMAVASSYWTSSRERIMNQFVVFEDDMGYILPQIIPMGTITRRAVENTWLT 634

Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA----KITPLYQVF----- 771
            +   K  LG +++    +P     + AD    EL I + I     KI     +      
Sbjct: 635 ASNAKKNRLGSELKSLIEAPKGYCFVGADVDSEELWIASLIGDSVFKIHGGTAIGWMTLE 694

Query: 772 ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-----I 823
                  D+H   A +I G+         R  AK  N+  IYG       T L+     +
Sbjct: 695 GTKNEGTDLHSKTA-KILGI--------SRNEAKIFNYGRIYGAGIKFTTTLLKKFNPAL 745

Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
             +EA       +    GI    +  K  +   G    IF R     E+  PK+ +    
Sbjct: 746 SDAEAKATANALYTATKGISGRYD--KKSIWYGGSESIIFNRLEAIAEMAHPKTPVLGAG 803

Query: 884 ERAAI---------------NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             A +               N  IQ S  D     +IS+   ++   +  ++ + +HDE+
Sbjct: 804 ITAPLQKANLSTNNFLTSRINWAIQSSGVDYLHLLIISMDYLIKLFDIDARLCITVHDEI 863

Query: 929 VFEVPEEEITTAS 941
            + V EE+   A+
Sbjct: 864 RYLVKEEDKFRAA 876


>gi|194039637|ref|XP_001927099.1| PREDICTED: DNA polymerase subunit gamma-1 [Sus scrofa]
          Length = 1224

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 123/430 (28%), Gaps = 120/430 (27%)

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             G  +N+ SP       F K   P             A     +      I K I  WR 
Sbjct: 741  DGNSYNVGSP-------FAKDFLPKMEDGTLQAGPGGASGPRAL-----EINKMISFWRN 788

Query: 677  LSK-IKSTYADSLPNHINKR-------------TQRVHTFYSLASTMTGRLASLEPNLQN 722
              K I S     LP     R                +      A T+T R         +
Sbjct: 789  AHKRISSQMVVWLPRSALPRAVTRHPAFDEEGRYGAILPQVVTAGTITRRAVEPTWLTAS 848

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVF------ 771
                  +G +++    +PP   L+ AD    EL I      AH A +      F      
Sbjct: 849  NARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAGMHGCT-AFGWMTLQ 907

Query: 772  ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR----LATQLRI 823
                   D+H   AA +            R HAK  N+  IYG   PF     +    R+
Sbjct: 908  GRKSRGTDLHSKTAATV---------GISREHAKIFNYGRIYGAGQPFAERLLMQFNHRL 958

Query: 824  PRSEAADYIKRYFHRFPGIHEY-------------------------------------- 845
             R EAA+  ++ +    G+  Y                                      
Sbjct: 959  TRQEAAEKAQQMYAVTKGLRRYRLSDEGEWLVRELDLPVDRTEDGWISLQDLRKIQREAS 1018

Query: 846  -------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI--------------RNINE 884
                    E         G    +F +       ++P++ +              +    
Sbjct: 1019 RKSRRKKWEVVAERAWTGGTESEMFNKLESIATSDTPRTPVLGCRISRALEPSTVQGEFM 1078

Query: 885  RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE------IT 938
             + +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V EE+        
Sbjct: 1079 TSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALAL 1138

Query: 939  TASQIIVHSM 948
              + ++   M
Sbjct: 1139 QVTNLLTRCM 1148


>gi|242091235|ref|XP_002441450.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
 gi|317374865|sp|C5YUK3|FEN11_SORBI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
           Full=Flap structure-specific endonuclease 1-A
 gi|241946735|gb|EES19880.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
          Length = 380

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 100/279 (35%), Gaps = 53/279 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + + G  N   +LL+   K     +   +FD      + E      + R   
Sbjct: 55  TNEAGEVTSHLQGMFNRTIRLLEAGIK---PVY---VFDGKPPDMKKEELAKRFSKREDA 108

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
              L   +                          +   +  G+P +E    EA+   A  
Sbjct: 109 TNDLKEAVEAGDKDAVEKLSKRTVKVTAQHNDDCKRLLRLMGVPVVEAPS-EAEAECAAL 167

Query: 125 TYIAEKEGFAVT-IISTDKDLMQLVSPT--TCLYDTVKEE----KIDIEHVIKKWGIPPE 177
                     V  + S D D +   +P     L D   ++    + D+  V+++  +  +
Sbjct: 168 CK-----NDKVFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMD 222

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L  L G   D    I GIG +TA  L++++G++E+IL N ++ + +   +    Y 
Sbjct: 223 QFIDLCILCG--CDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDW--PYQ 278

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           E  RL ++         +T+ +  L     +   LISFL
Sbjct: 279 EARRLFKE-------PNVTLDVPELKWTPPDEEGLISFL 310


>gi|327292550|ref|XP_003230973.1| DNA polymerase gamma [Trichophyton rubrum CBS 118892]
 gi|326466779|gb|EGD92232.1| DNA polymerase gamma [Trichophyton rubrum CBS 118892]
          Length = 1137

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 65/390 (16%), Positives = 119/390 (30%), Gaps = 56/390 (14%)

Query: 597 QVSAEISKNLLSLEENIY----DLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWK 651
            +S E +  L    E++Y       G     +SP   G +  F   K  S         +
Sbjct: 565 DMSEETNAALRESREHVYFKLPHKDGPDARCASPLSKGYLQYFESGKLSSQFPLAKEALE 624

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ--RVHTFYSLASTM 709
             A     I+  D    + ++  + L K       +L   ++  ++   +        T+
Sbjct: 625 MNASCSYWISARDRITSQMVVYKKDLEK-----TGALGKELSPDSKVGFILPQVIPMGTI 679

Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
           T R         +      +G +++    +PP    + AD    EL I A +        
Sbjct: 680 TRRAVENTWLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASLVGDAQFQL 738

Query: 770 VFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS--- 813
              N               D+H   A +I G+         R +AK  N+  IYG     
Sbjct: 739 HGGNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNNAKVFNYGRIYGAGLKF 789

Query: 814 PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI--------- 862
              L  Q    +  +E      + +    G               G  E+          
Sbjct: 790 AATLLRQFNPSMSETETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVFNKLEEFA 849

Query: 863 FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
              R     + +        +   +     + IN  IQ S  D     +IS+   +    
Sbjct: 850 EQERPRTPVLGAGITEALMRRFINKGGFMTSRINWAIQSSGVDYLHLLIISMDYLIRRFN 909

Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIV 945
           L  ++ + +HDE+ + V E +   A+  + 
Sbjct: 910 LDARLAITVHDEIRYVVRETDKYKAAMALQ 939


>gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 41/209 (19%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            Q    D  I + + E   +     T       +L   ++   +   T     ++ TGR 
Sbjct: 7   LQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFCGASRTGRW 66

Query: 714 ASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTKKLI 746
           A       N+P  T   + I                           R   I+P  KKL+
Sbjct: 67  AGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQGKKLV 126

Query: 747 SADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            +D S IE R+LA +A      + F         D++++  A  F +  + V+   R+  
Sbjct: 127 ISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKNVTKAQRQIG 186

Query: 802 KTINFSIIYGISP-----FRLATQLRIPR 825
           K +   + YG        F LA  L +  
Sbjct: 187 KVMELGLGYGGGVAAFLTFALAYGLNLDE 215


>gi|255713056|ref|XP_002552810.1| KLTH0D01980p [Lachancea thermotolerans]
 gi|238934190|emb|CAR22372.1| KLTH0D01980p [Lachancea thermotolerans]
          Length = 1223

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 100/286 (34%), Gaps = 44/286 (15%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           ++    +        T+T R         +   K  +G +++    +PP    + AD   
Sbjct: 613 DEEISIILPSVIPMGTVTRRSVENTWLTASNAKKNRIGSELKAQVQAPPGYVFVGADVDS 672

Query: 753 IELRILAHIAK----------ITPLYQVFE--NSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
            EL I + ++           I  +          D+H   A +I G          R  
Sbjct: 673 EELWIASLVSDSVFNIHGGTPIGWMCLEGSKSEGTDMHTKTA-QILGC--------SRNE 723

Query: 801 AKTINFSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           AK  N+  IYG    + ATQL       +   EA +  ++ +    G+ +  +  K F  
Sbjct: 724 AKIFNYGRIYGAGV-KFATQLLKNFNPGLTDYEAKETAEKLYSSTKGLVKRSKTFKKF-W 781

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERA---------------AINAPIQGSAADI 899
            +G    +F +  H  E  +P++ +      +                IN  IQ S  D 
Sbjct: 782 YSGSESILFNKLEHIAEQAAPRTPVLGAGITSSLMKGNLGSNTFLPSRINWAIQSSGVDY 841

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
                 S++  ++   L  ++ L IHDE+ F   E++    +  + 
Sbjct: 842 LHLLCCSMNYLIKKFSLRARLALSIHDEIRFLTAEKDKYKTAMALQ 887


>gi|163841492|ref|YP_001625897.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954968|gb|ABY24483.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 157

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGR-------------RIHYDEINSPKSSIRNIN 883
             +P     +E       +   V T  GR             R   ++      ++    
Sbjct: 3   RTYPRAVALVENAARAGERGEIVSTFLGRSSPPPSERWLAAQRSTTEQEQHWADNLARSR 62

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQ 942
            R   N  +QGSAA+     +  + + L     L  +M+  +HDE++   PE  +   S 
Sbjct: 63  GRFTRNFVVQGSAAEWASCWLAELRRRLRAQPGLNAEMVFFLHDEVMVHCPESAVEQVSA 122

Query: 943 IIVHSMEKA---CLPKINLRVPLKVNIKVSNNWQEE 975
           +I  + + A      +  +  P  V I V +++ E 
Sbjct: 123 LISAAAQSAKELIYGQAPINFP--VTIAVVDHYDEA 156


>gi|310005850|gb|ADP00235.1| exonuclease [Cyanophage Syn26]
          Length = 254

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 27/206 (13%)

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI- 107
           L   +KE       ++F      FR +I P+YK +R +            +       I 
Sbjct: 46  LDKIQKELGEFDEMILFFTSPNNFRKKILPEYKGHRQRKKPCG------FKRVINNLKIE 99

Query: 108 -PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
              I     EADD +  Y            I+S DKD+ Q+      LYD  +  +I  +
Sbjct: 100 YKVIIKDTLEADDTMGVYATKYPGN----IIVSPDKDMRQIPG---KLYDFKETVEITPD 152

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
                      +   +Q + GD+ D   G+PGIG K A  + +  G     ++     K 
Sbjct: 153 E--------GARWHLIQTMAGDNTDGYSGVPGIGIKRAEQIFKLKGYTWKAVVETFEEKG 204

Query: 227 KKRRENILEYAETARLSRKLVMLRTD 252
               + ++     A+L+R L     D
Sbjct: 205 LTEEDALI----NAQLARILTTDDYD 226


>gi|119478758|ref|XP_001259434.1| DNA polymerase gamma [Neosartorya fischeri NRRL 181]
 gi|119407588|gb|EAW17537.1| DNA polymerase gamma [Neosartorya fischeri NRRL 181]
          Length = 1109

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 85/281 (30%), Gaps = 44/281 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 642 ILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMIKAPPGYVFVGADVDSQELWI- 700

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +           N               D+H   A  I G+         R  AK  N
Sbjct: 701 ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA-HILGI--------SRNDAKVFN 751

Query: 806 FSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           +  IYG      AT LR     +   E  +   + +    G               G  E
Sbjct: 752 YGRIYGAGVKFAATLLRQFNPSMSEKETQEVATKLYRETKGTRTTRRILSENPFWRGGTE 811

Query: 861 TI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAM 904
           +             R     + +        +   +     + IN  IQ S  D     +
Sbjct: 812 SFVFNKLEEFADQERPRTPALGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLI 871

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           IS+   +    +  ++ + +HDE+ + V EE+   A+  + 
Sbjct: 872 ISMDYLIRRFNIDARLAITVHDEIRYLVKEEDKYRAAMALQ 912


>gi|331229914|ref|XP_003327622.1| DNA polymerase gamma [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309306612|gb|EFP83203.1| DNA polymerase gamma [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1303

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 88/267 (32%), Gaps = 46/267 (17%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +    ++  T+T R             K  +G +++    +PP   ++ AD    EL I 
Sbjct: 804  ILPQVTVMGTITRRATEKTWLAAANAKKNKIGTELKSMIRAPPGYAIVGADVDSEELWIS 863

Query: 759  AHIA----KITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
            + +      +     +             D+H   A+ I G+         R  AK  N+
Sbjct: 864  SVMGDAQFGMHGATAIGWMTLEGTKVAGTDLHSKTAS-ILGI--------SRNDAKVFNY 914

Query: 807  SIIYGIS-------------------PFRLATQLRIPRSEAADYIKRYFHR---FPGIHE 844
            S IYG                       +LA QL        +Y    F R   + G   
Sbjct: 915  SRIYGAGIAHAVQLLMKADPTASKTEATKLAKQLYASTKGVKNYRADMFERKFWYGGTES 974

Query: 845  YIEKTKNFVRQNGYVETI---FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
            Y+      +    Y ET     G      + + P +        + +N  +Q S  D   
Sbjct: 975  YLFNKLEQIALAEYPETPALNCGITRALRKCHLPSAGEGPDFMTSRVNWAVQSSGVDYLH 1034

Query: 902  RAMISVHKSLEDHKLATKMLLQIHDEL 928
              ++++    + + +  + ++ +HDE+
Sbjct: 1035 MLIVAMDYLTDRYGIDARYMISVHDEI 1061


>gi|148675119|gb|EDL07066.1| polymerase (DNA directed), gamma, isoform CRA_b [Mus musculus]
          Length = 1239

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 124/430 (28%), Gaps = 120/430 (27%)

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             G  +N+ SP       F K   P             A     +      I K I  WR 
Sbjct: 756  DGNNYNVGSP-------FAKDFLPKMEDGTLQAGPGGASGPRAL-----EINKMISFWRN 803

Query: 677  LSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTGRLASLEPNLQN 722
              K I S     LP     R    H  +               A T+T R         +
Sbjct: 804  AHKRISSQMVVWLPRSALPRVVTRHPSFDEEGHYGAILPQVVTAGTITRRAVEPTWLTAS 863

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVF------ 771
                  +G +++    +PP   L+ AD    EL I      AH A +      F      
Sbjct: 864  NARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAGMHGCT-AFGWMTLQ 922

Query: 772  ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--I 823
                   D+H   AA +            R HAK  N+  IYG       RL  Q    +
Sbjct: 923  GRKSRGTDLHSKTAATV---------GISREHAKIFNYGRIYGAGQSFAERLLMQFNHRL 973

Query: 824  PRSEAADYIKRYFHRFPGIHEYI-----EKTKNFV------RQNGYVETIFGRR-IHYDE 871
             R EAA+  ++ +    G+  Y      E     +       ++G+V     R       
Sbjct: 974  TRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWVSLQDLRMIRREAS 1033

Query: 872  INSPKSSIRNINERA--------------------------------------------- 886
              S        +ERA                                             
Sbjct: 1034 RKSRWKKWEVASERAWTGGTESEMFNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEFI 1093

Query: 887  --AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS--- 941
               +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V EE+   A+   
Sbjct: 1094 TSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALAL 1153

Query: 942  ---QIIVHSM 948
                ++   M
Sbjct: 1154 QITNLLTRCM 1163


>gi|326919868|ref|XP_003206199.1| PREDICTED: flap endonuclease 1-like [Meleagris gallopavo]
          Length = 381

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 93/299 (31%), Gaps = 56/299 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEEGETTSHLMG---MFYRTIRMVENGIKPVY---VFDGKPPQLKSGELARRTERRSEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP +E  G EA+   AT 
Sbjct: 108 EKHLQEAQEAGEETNIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPG-EAEASCATL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E K        +  +++  G+  E+
Sbjct: 167 VK----AGKVYAAATEDMDCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQDLGLTWEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    I GIG K A  L++++  +E I+ +    K       + + A+
Sbjct: 223 FVDLCILLG--CDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQ 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
              L         DV +      L   + N   L+ F               + R++ +
Sbjct: 281 KLFL-------EPDV-VNPDDVELKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKS 331


>gi|260939924|ref|XP_002614262.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
 gi|238852156|gb|EEQ41620.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
          Length = 930

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 97/276 (35%), Gaps = 41/276 (14%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +K    +        T+T R         +      +G +++    +P     + AD   
Sbjct: 329 HKDMGIILPKLCTMGTITRRATENTWLTASNSKANRIGSELKSLIEAPKGYVFVGADVDS 388

Query: 753 IELRILAHI----------AKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800
            EL I + I            +  +    + +   D+H   A +I G+         R  
Sbjct: 389 EELWIASLIGDSMFKIHGGTALGWMTLEGDKNQKTDLHSKTA-DIMGI--------SRND 439

Query: 801 AKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           AK  N+  IYG       RL  Q    +  +EA    K  + +  G+  + +  K  V  
Sbjct: 440 AKVFNYGRIYGAGVKFATRLLKQCNANLSDAEAERLAKELYEKTKGLASHSKIFKRRVYH 499

Query: 856 NGYVETIFGRRIHYDEINSPKSSI---------------RNINERAAINAPIQGSAADIT 900
            G    +F           P++ +               +N    + IN  IQ S  D  
Sbjct: 500 GGSESVMFNALEAIAYQEHPRTPVLGASITDALTQKYLNKNNYLTSRINWTIQSSGVDYL 559

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
              ++S+   +E  KL  ++++ +HDE+ + V EE+
Sbjct: 560 HLLIVSMDYLIEKFKLDARLMITVHDEVRYMVKEEQ 595


>gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage]
          Length = 234

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 60/175 (34%), Gaps = 37/175 (21%)

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI-------------- 733
           L   ++   +   T     ++ TGR A       N+P  T   + I              
Sbjct: 41  LLKSVSADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAEL 100

Query: 734 -------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----SL 775
                        R   I+P  KKL+ +D S IE R+LA +A        F         
Sbjct: 101 ICDDIMQLTSSALRGCIIAPQGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGD 160

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP-----FRLATQLRIPR 825
           D++++  A  F +  + V+   R+  K +   + YG        F LA  L +  
Sbjct: 161 DLYKLAYARAFNLLPKNVTKAQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDE 215


>gi|87080815|ref|NP_059490.2| DNA polymerase subunit gamma-1 [Mus musculus]
 gi|37537265|dbj|BAC98463.1| polymerase (DNA directed), gamma [Mus musculus]
          Length = 1217

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 124/430 (28%), Gaps = 120/430 (27%)

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             G  +N+ SP       F K   P             A     +      I K I  WR 
Sbjct: 734  DGNNYNVGSP-------FAKDFLPKMEDGTLQAGPGGASGPRAL-----EINKMISFWRN 781

Query: 677  LSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTGRLASLEPNLQN 722
              K I S     LP     R    H  +               A T+T R         +
Sbjct: 782  AHKRISSQMVVWLPRSALPRVVTRHPSFDEEGHYGAILPQVVTAGTITRRAVEPTWLTAS 841

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVF------ 771
                  +G +++    +PP   L+ AD    EL I      AH A +      F      
Sbjct: 842  NARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAGMHGCT-AFGWMTLQ 900

Query: 772  ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--I 823
                   D+H   AA +            R HAK  N+  IYG       RL  Q    +
Sbjct: 901  GRKSRGTDLHSKTAATV---------GISREHAKIFNYGRIYGAGQSFAERLLMQFNHRL 951

Query: 824  PRSEAADYIKRYFHRFPGIHEYI-----EKTKNFV------RQNGYVETIFGRR-IHYDE 871
             R EAA+  ++ +    G+  Y      E     +       ++G+V     R       
Sbjct: 952  TRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWVSLQDLRMIRREAS 1011

Query: 872  INSPKSSIRNINERA--------------------------------------------- 886
              S        +ERA                                             
Sbjct: 1012 RKSRWKKWEVASERAWTGGTESEMFNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEFI 1071

Query: 887  --AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS--- 941
               +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V EE+   A+   
Sbjct: 1072 TSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALAL 1131

Query: 942  ---QIIVHSM 948
                ++   M
Sbjct: 1132 QITNLLTRCM 1141


>gi|207110463|ref|ZP_03244625.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 103

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADY 750
           +  +  ++HT +    T TGRL+S  PNLQNIP+++  G  IR+ FI+      L+  DY
Sbjct: 4   LKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDY 63

Query: 751 SQIELRILAHIAKITPLYQ--VFENSLDIHRMVAAEIFG 787
           SQIELR+LAH ++   L +   F+ +    R     +FG
Sbjct: 64  SQIELRLLAHFSQDKDLMEGRFFKGARHSFRNFLRRLFG 102


>gi|302306477|ref|NP_982895.2| ABL052Cp [Ashbya gossypii ATCC 10895]
 gi|317374930|sp|Q75DS8|FEN1_ASHGO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|299788534|gb|AAS50719.2| ABL052Cp [Ashbya gossypii ATCC 10895]
          Length = 378

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 96/284 (33%), Gaps = 49/284 (17%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             DG   + + G   M ++ L+         +   +FD      +          R +  
Sbjct: 56  SADGETTSHLMG---MFYRTLRMVDHGLKPCY---VFDGKPPVLKAHELDKRTERRKETE 109

Query: 89  E---MLLPQLPLVRL-----------------ATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +    L  Q  +++                       GIP ++  G EA+   A      
Sbjct: 110 QKLAELTEQAEIMKHERRLVKVEQWHVAEAKKLLGLMGIPYVDAPG-EAEAQCAELAKK- 167

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCL 182
              G      S D D +   +P    + T  E       +ID E V++  G+  E++V L
Sbjct: 168 ---GKVFAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHEIDTELVLQGLGLSQEQLVDL 224

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             + G   D    I G+G  TA  L++E+G+LENI+   S     K    + E       
Sbjct: 225 GIMLG--CDYCESIKGVGPVTALKLIKEHGSLENIVEFISSGGNAKW--KVPENWP---- 276

Query: 243 SRKLVMLRTDVPITIPLE--HLILEDCNGPRLISF-LKALEFTK 283
             K        P  +  E   L  E+     LI+F  K   F +
Sbjct: 277 -YKEARALFLQPDVLDAEGVSLKWEEPKEEELIAFMCKEKGFNE 319


>gi|74195213|dbj|BAE28339.1| unnamed protein product [Mus musculus]
          Length = 1217

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 123/430 (28%), Gaps = 120/430 (27%)

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             G  +N+ SP       F K   P             A     +      I K I  WR 
Sbjct: 734  DGNNYNVGSP-------FAKDFLPKMEDGTLQAGPGGASGPRAL-----EINKMISFWRN 781

Query: 677  LSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTGRLASLEPNLQN 722
              K I S     LP     R    H  +               A T+T R         +
Sbjct: 782  AHKRISSQMVVWLPRSALPRVVTRHPSFDEEGHYGAILPQVVTAGTITRRAVEPTWLTAS 841

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVF------ 771
                  +G +++    +PP   L+ AD    EL I      AH A +      F      
Sbjct: 842  NARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAGMHGCT-AFGWMTLQ 900

Query: 772  ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--I 823
                   D+H   AA +            R HAK  N+  IYG       RL  Q    +
Sbjct: 901  GRKSRGTDLHSKTAATV---------GISREHAKIFNYGRIYGAGQSFAERLLMQFNHRL 951

Query: 824  PRSEAADYIKRYFHRFPGIHEYI-----EKTKNFV------RQNGYVETIFGRR-IHYDE 871
             R EAA+  ++ +    G+  Y      E     +       ++G+V     R       
Sbjct: 952  TRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWVSLQDLRMIRREAS 1011

Query: 872  INSPKSSIRNINERA--------------------------------------------- 886
              S        +ERA                                             
Sbjct: 1012 RKSRWKKWEVASERAWTGGTESEMFNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEFI 1071

Query: 887  --AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE------IT 938
               +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V EE+        
Sbjct: 1072 TSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYHAALAL 1131

Query: 939  TASQIIVHSM 948
              + ++   M
Sbjct: 1132 QITNLLTRCM 1141


>gi|213609178|ref|ZP_03369004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 52

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           ++Q+HDELVFEV ++++   ++ I   ME        + VPL V +    NW + +
Sbjct: 1   MMQVHDELVFEVHKDDLDAVAKRIHQLMENCT----RIDVPLLVEVGSGENWDQAH 52


>gi|163804087|ref|ZP_02197878.1| exonuclease IX [Vibrio sp. AND4]
 gi|159172098|gb|EDP57046.1| exonuclease IX [Vibrio sp. AND4]
          Length = 97

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           HL ++D  + I R   A P         P + IA       + L     E+  +H   +F
Sbjct: 4   HLVIIDALNLIRRVHSAQPD--------PTD-IARTITTTGRTLSRILSEAQPTHIIAVF 54

Query: 66  DYPAVT--FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA 104
           D+      +R +I PDYK NR  +PE LL  L  ++ A   
Sbjct: 55  DHHEQQRGWRADILPDYKQNRKPMPEPLLKGLDAIQQAWWE 95


>gi|73951465|ref|XP_545850.2| PREDICTED: similar to DNA polymerase gamma subunit 1 (Mitochondrial
            DNA polymerase catalytic subunit) (PolG-alpha) [Canis
            familiaris]
          Length = 1234

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 104/339 (30%), Gaps = 94/339 (27%)

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             R   +      A T+T R         +      +G +++    +PP    + AD    
Sbjct: 836  GRYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYVFVGADVDSQ 895

Query: 754  ELRIL-----AHIAKITPLYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I      AH A +      F             D+H   AA +            R 
Sbjct: 896  ELWIAAVLGDAHFAGMHGCT-AFGWMTLQGRKSRGTDLHSKTAATV---------GISRE 945

Query: 800  HAKTINFSIIYGIS-PFR----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------- 845
            HAK  N+  IYG   PF     +    R+ R EAA+  ++ +    G+  Y         
Sbjct: 946  HAKIFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSEEGEWL 1005

Query: 846  --------------------IEKTKNFV-RQNGYVETIFGRRIHYDEINSPK-------- 876
                                + K +    R++ + +        +      +        
Sbjct: 1006 VRELDLPVDRTEDGWVSLQDLRKIQREASRKSRWKKWEVAAERAWRGGTESEMFNKLESI 1065

Query: 877  ---------------------SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                                 S+++     + +N  +Q SA D     ++++    E+  
Sbjct: 1066 AMSDTPCTPVLGCRISRALEPSAVKGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1125

Query: 916  LATKMLLQIHDELVFEVPEEEITTAS------QIIVHSM 948
            +  +  + IHDE+ + V EE+   A+       ++   M
Sbjct: 1126 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1164


>gi|50556422|ref|XP_505619.1| YALI0F19404p [Yarrowia lipolytica]
 gi|49651489|emb|CAG78428.1| YALI0F19404p [Yarrowia lipolytica]
          Length = 1046

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 88/285 (30%), Gaps = 47/285 (16%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                +        T+T R         +   K  +G +++    +PP    + AD    
Sbjct: 647 PGFGIIIPRIIPMGTITRRCVENTWLTASNAKKNRIGSELKSMIKAPPGYSFVGADVDSE 706

Query: 754 ELRILAHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           EL I A +   +                       D+H   A+ I G+         R  
Sbjct: 707 ELWI-ASLYGDSCFKNHGSTAIGWMTLEGTKSEGTDLHSKTAS-ILGI--------SRNE 756

Query: 801 AKTINFSIIYGIS-------------------PFRLATQLRIPRSEAADY-IKRYFHRFP 840
           AK  N+  IYG                        LA QL         Y I +Y     
Sbjct: 757 AKIFNYGRIYGAGLKFAEALLKQFSPNVTDAEASTLAGQLYTSTKGKKIYSIGKYSGGTE 816

Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
            I     K +    Q+   ET     +    ++S      +    + +N  IQ S  D  
Sbjct: 817 SI--LFNKLEEIATQDMP-ETPVLGAVITKALSSQNLKKSSF-MTSRVNWTIQSSGVDYL 872

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
              ++S+      + +  ++ + +HDEL F V  E+   A+  + 
Sbjct: 873 HMLVVSMEYLAAKYDIDMRLCITVHDELRFLVKNEDAYRAAMALQ 917


>gi|291335808|gb|ADD95408.1| T7-like exonuclease [uncultured phage MedDCM-OCT-S05-C849]
          Length = 254

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 84/221 (38%), Gaps = 27/221 (12%)

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR-PKIPEMLLPQLPLVRLATQAFGI 107
           L   ++E       ++F      FR +I P YK +R  K P      +  ++        
Sbjct: 46  LDKVKREFPFYDEIILFFTSPNNFRKKILPSYKGHRNRKKPCGFKRVIQKLKE-----NY 100

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
             I     EADD +  Y            I+S DKD+ Q+      LYD  +  +I  E 
Sbjct: 101 KVIIKDTLEADDAMGIYATKYTGN----IIVSPDKDMRQIAG---KLYDFNETVEITPEE 153

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                     +   +QA+ GD+ D   G+PGIG K A  + +  G     ++     K  
Sbjct: 154 --------GARWHLIQAMAGDNTDGYSGVPGIGIKRAEQIFKLKGYTWKAVVETFEEKGM 205

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
             ++ ++     A+L+R L +   D     P+  L   + +
Sbjct: 206 TEQDALV----NAQLARILTVDDYDSKKKEPI--LWTAEAD 240


>gi|326472602|gb|EGD96611.1| DNA polymerase gamma [Trichophyton tonsurans CBS 112818]
          Length = 1140

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 66/388 (17%), Positives = 119/388 (30%), Gaps = 52/388 (13%)

Query: 597 QVSAEISKNLLSLEENIY----DLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWK 651
            +S E +  L   +E++Y       G     +SP   G +  F   K  S         +
Sbjct: 568 DMSEETNAALRESKEHVYFKLPHKDGPDARCASPLSKGYLQYFESGKLSSQFPLAKEALE 627

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
             A     I+  D    + ++  + L K  S   +  P   + +   +        T+T 
Sbjct: 628 MNASCSYWISARDRITSQMVVYKKDLEKTGSLGRELSP---DSKVGFILPQVIPMGTITR 684

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R         +      +G +++    +PP    + AD    EL I A +          
Sbjct: 685 RAVENTWLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASLVGDAQFQLHG 743

Query: 772 EN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PF 815
            N               D+H   A +I G+         R +AK  N+  IYG       
Sbjct: 744 GNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNNAKVFNYGRIYGAGLKFAA 794

Query: 816 RLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI---------FG 864
            L  Q    +  +E      + +    G               G  E+            
Sbjct: 795 TLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVFNKLEEFAEQ 854

Query: 865 RRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
            R     + +        +   +     + IN  IQ S  D     +IS+   +    L 
Sbjct: 855 ERPRTPVLGAGITEALMRRFINKGGFMTSRINWAIQSSGVDYLHLLIISMDYLIRRFNLD 914

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIV 945
            ++ + +HDE+ + V E +   A+  + 
Sbjct: 915 ARLAITVHDEIRYVVRETDKYKAAMALQ 942


>gi|167565003|ref|ZP_02357919.1| putative phage exonuclease [Burkholderia oklahomensis EO147]
          Length = 264

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 27/182 (14%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           FR  IYP YK  R + PE      PL     +   +      G EADD++   +      
Sbjct: 72  FRRGIYPPYKGARGEKPE---QYKPLEDWVFENARVAWY--PGLEADDVMGVLS------ 120

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           G    I S DKD+  +      LY T K++ + I      W     + +  Q L GDS D
Sbjct: 121 GEDKVICSNDKDMKTVPG---RLYVTGKKKLVTITETRADW-----QWM-YQTLMGDSTD 171

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINA----SRIKQKKRR---ENILEYAETARLSR 244
              G  G G   A  +L+   +L+ +  NA       K+ K +   +  L++   A L+R
Sbjct: 172 GFGGCVGCGESGAERVLEGCRSLKEMAHNAVLRYLEPKKGKYKDVTQTALDFRRMAVLAR 231

Query: 245 KL 246
            L
Sbjct: 232 IL 233


>gi|190345004|gb|EDK36807.2| hypothetical protein PGUG_00905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1209

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 89/297 (29%), Gaps = 65/297 (21%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +     +        T+T R         +      +G +++    +P     + AD   
Sbjct: 635 HPEMGIILPKLCSMGTITRRATENTWLTASNSKSNRIGSELKAMIEAPQGYAFVGADVDS 694

Query: 753 IELRILAHIAKITPLYQVF-------------ENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I A +   +                       D+H   A EI G+         R 
Sbjct: 695 EELWI-ASLVGDSMFKIHGGTALGWMTLEGDKNEGTDLHSKTA-EILGI--------SRN 744

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK  N+  IYG                A   +K++                + R  G  
Sbjct: 745 DAKVFNYGRIYGAG-----------VKFATTLLKQFNSELTDAAALKVAQDLYARTKGQT 793

Query: 860 -ETIFGRRIHYDEIN------------------------------SPKSSIRNINERAAI 888
            ++ F  R  Y                                  S K+  +N    + I
Sbjct: 794 GKSKFLDRPMYHGGTESVMFNALEAIAYQDDPRTPVLGAAITDALSKKNLNKNNYMTSRI 853

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           N  IQ S  D     +IS+   +  +++  +++L +HDE+ + V E++    + ++ 
Sbjct: 854 NWAIQSSGVDYLHLLLISMEYLIARYQVDARLILTVHDEIRYMVKEDQKYKLALLLQ 910


>gi|317374937|sp|C5WU23|FEN12_SORBI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
           Full=Flap structure-specific endonuclease 1-B
          Length = 428

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 90/263 (34%), Gaps = 50/263 (19%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPL------ 97
           ML + ++             +FD      + +        R    + L   + +      
Sbjct: 95  MLNRTVRMLEAGIKP---VFVFDGEPPEMKKKELAKRSLKRDDATKDLNRAIEIGDEDAV 151

Query: 98  -----------------VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT-IIS 139
                             +   +  G+P +E  G EA+   A        E   V  + S
Sbjct: 152 EKFSKRTVKVTRKHNDDCKRLLRLMGVPVVEAPG-EAEAQCAALC-----ENHQVYAVAS 205

Query: 140 TDKDLMQ------LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            D D +       L   T   Y      + D+  V+++ G+  ++ + L  L+G   D  
Sbjct: 206 EDMDSLTFGARRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSG--CDYC 263

Query: 194 PGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
             I GIG + A  L++++G +E +L N ++      R ++ E        +++  L  + 
Sbjct: 264 ENIKGIGGQRALKLIRQHGCIEEVLQNLNQ-----TRFSVPEDWP----YQEVRTLFKEP 314

Query: 254 PITIPLEHLILEDCNGPRLISFL 276
            ++  +        +   L+ FL
Sbjct: 315 NVSAGISDFTWTSPDTEGLMGFL 337


>gi|242032391|ref|XP_002463590.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
 gi|241917444|gb|EER90588.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
          Length = 477

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 90/263 (34%), Gaps = 50/263 (19%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPL------ 97
           ML + ++             +FD      + +        R    + L   + +      
Sbjct: 144 MLNRTVRMLEAGIKP---VFVFDGEPPEMKKKELAKRSLKRDDATKDLNRAIEIGDEDAV 200

Query: 98  -----------------VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT-IIS 139
                             +   +  G+P +E  G EA+   A        E   V  + S
Sbjct: 201 EKFSKRTVKVTRKHNDDCKRLLRLMGVPVVEAPG-EAEAQCAALC-----ENHQVYAVAS 254

Query: 140 TDKDLMQ------LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            D D +       L   T   Y      + D+  V+++ G+  ++ + L  L+G   D  
Sbjct: 255 EDMDSLTFGARRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSG--CDYC 312

Query: 194 PGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
             I GIG + A  L++++G +E +L N ++      R ++ E        +++  L  + 
Sbjct: 313 ENIKGIGGQRALKLIRQHGCIEEVLQNLNQ-----TRFSVPEDWP----YQEVRTLFKEP 363

Query: 254 PITIPLEHLILEDCNGPRLISFL 276
            ++  +        +   L+ FL
Sbjct: 364 NVSAGISDFTWTSPDTEGLMGFL 386


>gi|146423193|ref|XP_001487528.1| hypothetical protein PGUG_00905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1209

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 90/297 (30%), Gaps = 65/297 (21%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +     +        T+T R         +      +G +++    +P     + AD   
Sbjct: 635 HPEMGIILPKLCSMGTITRRATENTWLTASNSKSNRIGSELKAMIEAPQGYAFVGADVDS 694

Query: 753 IELRILAHIAKITPLYQVF-------------ENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I A +   +                       D+H   A EI G+        +R 
Sbjct: 695 EELWI-ASLVGDSMFKIHGGTALGWMTLEGDKNEGTDLHSKTA-EILGI--------LRN 744

Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859
            AK  N+  IYG                A   +K++                + R  G  
Sbjct: 745 DAKVFNYGRIYGAG-----------VKFATTLLKQFNSELTDAAALKVAQDLYARTKGQT 793

Query: 860 -ETIFGRRIHYDEIN------------------------------SPKSSIRNINERAAI 888
            ++ F  R  Y                                  S K+  +N    + I
Sbjct: 794 GKSKFLDRPMYHGGTESVMFNALEAIAYQDDPRTPVLGAAITDALSKKNLNKNNYMTSRI 853

Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           N  IQ S  D     +IS+   +  +++  +++L +HDE+ + V E++    + ++ 
Sbjct: 854 NWAIQSSGVDYLHLLLISMEYLIARYQVDARLILTVHDEIRYMVKEDQKYKLALLLQ 910


>gi|315042021|ref|XP_003170387.1| DNA polymerase gamma [Arthroderma gypseum CBS 118893]
 gi|311345421|gb|EFR04624.1| DNA polymerase gamma [Arthroderma gypseum CBS 118893]
          Length = 1138

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 86/287 (29%), Gaps = 44/287 (15%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           + +   +        T+T R         +      +G +++    +PP    + AD   
Sbjct: 664 DSKVGFILPQVIPMGTITRRAVENTWLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDS 723

Query: 753 IELRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I A +           N               D+H   A +I G+         R 
Sbjct: 724 EELWI-ASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRN 773

Query: 800 HAKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
           +AK  N+  IYG        L  Q    +  +E      + +    G             
Sbjct: 774 NAKVFNYGRIYGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRLLSEDPF 833

Query: 855 QNGYVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAAD 898
             G  E+             R     + +        +   +     + IN  IQ S  D
Sbjct: 834 LRGGTESFVFNKLEEFAEQERPRTPVLGAGITEALMRRFINKGGFMTSRINWAIQSSGVD 893

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
                +IS+   +    L  ++ + +HDE+ + V E +   A+  + 
Sbjct: 894 YLHLLIISMDYLIRRFNLDARLAITVHDEIRYVVRETDKYKAAMALQ 940


>gi|241956434|ref|XP_002420937.1| DNA polymerase gamma subunit, putative; mitochondrial DNA
           polymerase catalytic subunit, putative [Candida
           dubliniensis CD36]
 gi|223644280|emb|CAX41091.1| DNA polymerase gamma subunit, putative [Candida dubliniensis CD36]
          Length = 1329

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 106/314 (33%), Gaps = 48/314 (15%)

Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726
           I    + + QL K K           +     +    +   T+T R         +   K
Sbjct: 667 IKDQFVVYNQLGKNKFFDTIKESKE-HSSMGIIIPNLATMGTITRRATENTWLTASNAKK 725

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL----------- 775
             +G +++    +P     + AD    EL I A +   + L      +L           
Sbjct: 726 NRIGSELKSLIEAPKGYCFVGADVDSEELWI-ASLVGDSMLQIHGGTALGWMTLEGEKSQ 784

Query: 776 --DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL------RIPRSE 827
             D+H   A+ I G+         R  AK  N+  IYG    + AT+L       I   E
Sbjct: 785 KTDLHSKTAS-ILGI--------SRNDAKVFNYGRIYGAGV-KFATRLLKQFNGNITDEE 834

Query: 828 AADYIKRYFHR----------------FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871
           A    ++ +                  + G    +  T   + Q    +T        D 
Sbjct: 835 ADKVARQLYDSTKGRTAMTKYLPSKIYYGGTESIMFNTLEAIAQQEEPKTPVLGASITDA 894

Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
           +N    +  N    + +N  IQ S  D     +IS+   +E + +  ++ + +HDEL + 
Sbjct: 895 LNVKNLNT-NQYMTSRVNWTIQSSGVDYLHLLIISMEYLIEKYGIEARLAITVHDELRYL 953

Query: 932 VPEEEITTASQIIV 945
           V E +   A+ ++ 
Sbjct: 954 VKETDKYKAALLLQ 967


>gi|17380447|sp|P54099|DPOG1_MOUSE RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|9082197|gb|AAF82772.1|AF268975_1 mitochondrial DNA polymerase gamma [Mus musculus]
          Length = 1239

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 122/430 (28%), Gaps = 120/430 (27%)

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             G  +N+ SP       F K   P             A     +      I K I  WR 
Sbjct: 735  DGNNYNVGSP-------FAKDFLPKMEDGTLQAGPGGASGPRAL-----EINKMISFWRN 782

Query: 677  LSK-IKSTYADSLPNHINKR-------------TQRVHTFYSLASTMTGRLASLEPNLQN 722
              K I S     LP     R                +      A T+T R         +
Sbjct: 783  AHKRISSQMVVWLPRSALPRVVTRHPAFDEEGHYGAILPQVVTAGTITRRAVEPTWLTAS 842

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA-----HIAKITPLYQVF------ 771
                  +G +++    +PP   L+ AD    EL I A     H A +      F      
Sbjct: 843  NARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAGMHGCT-AFGWMTLQ 901

Query: 772  ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--I 823
                   D+H   AA +            R HAK  N+  IYG       RL  Q    +
Sbjct: 902  GRKSRGTDLHSKTAATV---------GISREHAKIFNYGRIYGAGQSFAERLLMQFNHRL 952

Query: 824  PRSEAADYIKRYFHRFPGIHEYI-----EKTKNFV------RQNGYVETIFGRR-IHYDE 871
             R EAA+  ++ +    G+  Y      E     +       ++G+V     R       
Sbjct: 953  TRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWVSLQDLRMIRREAS 1012

Query: 872  INSPKSSIRNINERA--------------------------------------------- 886
              S         ERA                                             
Sbjct: 1013 RKSRWKKWEVAAERAWTGGTESEMFNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEFI 1072

Query: 887  --AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS--- 941
               +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V EE+   A+   
Sbjct: 1073 TSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALAL 1132

Query: 942  ---QIIVHSM 948
                ++   M
Sbjct: 1133 QITNLLTRCM 1142


>gi|294998863|gb|ADF58177.1| DNA polymerase [Pseudomonas phage JG004]
          Length = 904

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 83/261 (31%), Gaps = 40/261 (15%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +  R+ T        T R+   +       I +  G ++R  F        I  D+  +E
Sbjct: 552 QDGRIPTPADTCGAATSRMKHRKV-ANVPRITSLYGAELRELFGVEDGYFQIGYDFDSLE 610

Query: 755 LRILAHIAKITPLYQVFENSL------DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            R  +         + +  SL      D+H M+A  I  +   + +   R  AK + +  
Sbjct: 611 ARKESAYCDQYDPTKEYCKSLMMEKPFDVHTMMAKRISEIIGRQFN---RSPAKNVKYGC 667

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG--YVETIFGRR 866
            YG    ++A  +             ++     +    +        NG  Y+  + GRR
Sbjct: 668 TYGAQAGKVAKTIGADLQTGQLVFDAFWDAAFPLKALKDDLTKQWEANGKKYIVGVDGRR 727

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-------- 918
           +               +  A +N+  Q       +RAM+   + LE   L          
Sbjct: 728 VPTR------------SAHAILNSLFQSGGVICAKRAMVIHDQLLEKEGLKVDFFKEDWK 775

Query: 919 -------KMLLQIHDELVFEV 932
                  +M+   HDE   EV
Sbjct: 776 NKPEFCQQMIAY-HDEAQLEV 795


>gi|148709394|gb|EDL41340.1| flap structure specific endonuclease 1, isoform CRA_a [Mus
           musculus]
          Length = 396

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 56/299 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 70  QNEEGETTSHLMG---MFYRTIRMMENGIKPVY---VFDGKPPQLKSGELAKRSERRAEA 123

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP ++    EA+   A  
Sbjct: 124 EKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAAL 182

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E      ++  +  V+++ G+  E+
Sbjct: 183 AK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQ 238

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    I GIG K A  L+Q++ ++E I+      K       + + A+
Sbjct: 239 FVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQ 296

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
              L  ++        +      L   + N   L+ F               + R++ +
Sbjct: 297 QLFLEPEV--------LDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKS 347


>gi|330907546|ref|XP_003295846.1| hypothetical protein PTT_03429 [Pyrenophora teres f. teres 0-1]
 gi|311332479|gb|EFQ96060.1| hypothetical protein PTT_03429 [Pyrenophora teres f. teres 0-1]
          Length = 1157

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 88/285 (30%), Gaps = 42/285 (14%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
           K+   +        T+T R         +   K  +G +++    +P     + AD    
Sbjct: 664 KKVGFILPQIIPMGTITRRSVENTWLTASNAKKNRVGSELKSMVRAPKGYCFVGADVDSQ 723

Query: 754 ELRILAHI------------AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
           EL I + I                 L        D+H   AA I G+         R  A
Sbjct: 724 ELWIASLIGDATFQLHGGNAVGFMTLEGTKAAGTDLHSRTAA-ILGI--------SRNDA 774

Query: 802 KTINFSIIYGIS---PFRLATQLRIPRSEAA--DYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           K  N+  IYG        L  Q     +EA      +  +    G+    ++        
Sbjct: 775 KVFNYGRIYGAGLKFASTLLRQFNPSLTEAQTTKTAEDLYKNTKGVKTIRKQLHERPFWR 834

Query: 857 GYVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADIT 900
           G  E+             R     + +        +   +     + IN  IQ S  D  
Sbjct: 835 GGTESFVFNKLEDFAEQERPRTPVLGAAITEALQRRYLSKGGFMTSRINWAIQSSGVDYL 894

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
              ++S+        L  ++ + +HDE+ + V EE+   A+  + 
Sbjct: 895 HLLIVSMDYLTRRFNLDCRLSITVHDEIRYLVKEEDKYKAAMALQ 939


>gi|301768381|ref|XP_002919612.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1-like
            [Ailuropoda melanoleuca]
          Length = 1227

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 107/339 (31%), Gaps = 94/339 (27%)

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             R   +      A T+T R         +      +G +++    +PP   L+ AD    
Sbjct: 829  GRYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQ 888

Query: 754  ELRIL-----AHIAKITPLYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I      AH A++      F             D+H   AA +            R 
Sbjct: 889  ELWIAAVLGDAHFARMHGCT-AFGWMTLQGRKSRGTDLHSKTAATV---------GISRE 938

Query: 800  HAKTINFSIIYGIS-PFR----LATQLRIPRSEAADYIKRYFHRFPGIHEYI-----EKT 849
            HAK  N+  IYG   PF     +    R+ R EAA+  ++ +    G+  Y      E  
Sbjct: 939  HAKIFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWL 998

Query: 850  KNFVR------QNGYVETIFGRRIHYDEIN-SPKSSIRNINERA---------------- 886
               +       ++G+V     R+I  +    S       + ERA                
Sbjct: 999  VRELHLPVDRTEDGWVSLQDLRKIQREASRKSRWKKWEVVAERAWMGGTESEMFNKLESI 1058

Query: 887  -------------------------------AINAPIQGSAADITRRAMISVHKSLEDHK 915
                                            +N  +Q SA D     ++++    E+  
Sbjct: 1059 AMSDTPCTPVLGCRISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1118

Query: 916  LATKMLLQIHDELVFEVPEEEITTAS------QIIVHSM 948
            +  +  + IHDE+ + V EE+   A+       ++   M
Sbjct: 1119 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1157


>gi|20071071|gb|AAH27295.1| Fen1 protein [Mus musculus]
          Length = 380

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 56/299 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEEGETTSHLMG---MFYRTIRMMENGVKPVY---VFDGKPPQLKSGELAKRSERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP ++    EA+   A  
Sbjct: 108 EKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E      ++  +  V+++ G+  E+
Sbjct: 167 AK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    I GIG K A  L+Q++ ++E I+      K       + + A+
Sbjct: 223 FVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQ 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
              L  ++        +      L   + N   L+ F               + R++ +
Sbjct: 281 QLFLEPEV--------LDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKS 331


>gi|46048490|ref|NP_032025.2| flap endonuclease 1 [Mus musculus]
 gi|16307328|gb|AAH10203.1| Flap structure specific endonuclease 1 [Mus musculus]
 gi|26337949|dbj|BAC32660.1| unnamed protein product [Mus musculus]
 gi|26347483|dbj|BAC37390.1| unnamed protein product [Mus musculus]
 gi|53791234|dbj|BAD52443.1| flap endonuclease 1 [Mus musculus]
 gi|74145457|dbj|BAE36169.1| unnamed protein product [Mus musculus]
 gi|74150381|dbj|BAE32236.1| unnamed protein product [Mus musculus]
 gi|74185061|dbj|BAE39135.1| unnamed protein product [Mus musculus]
 gi|148709396|gb|EDL41342.1| flap structure specific endonuclease 1, isoform CRA_c [Mus
           musculus]
          Length = 380

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 56/299 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEEGETTSHLMG---MFYRTIRMMENGIKPVY---VFDGKPPQLKSGELAKRSERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP ++    EA+   A  
Sbjct: 108 EKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E      ++  +  V+++ G+  E+
Sbjct: 167 AK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    I GIG K A  L+Q++ ++E I+      K       + + A+
Sbjct: 223 FVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQ 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
              L  ++        +      L   + N   L+ F               + R++ +
Sbjct: 281 QLFLEPEV--------LDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKS 331


>gi|290997255|ref|XP_002681197.1| predicted protein [Naegleria gruberi]
 gi|317374913|sp|D2V434|FEN1_NAEGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|284094820|gb|EFC48453.1| predicted protein [Naegleria gruberi]
          Length = 387

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 99/291 (34%), Gaps = 51/291 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
              DG   N + G      K+L+   K     +   +FD      ++      K  + + 
Sbjct: 54  TDKDGEVTNHLQGLLARTTKMLEYGIK---PCY---VFDGKPPQLKSGELEKRKERQKEA 107

Query: 88  PEML-----------------------LPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            E                           Q    +   +  G+P +E  G EA+   A  
Sbjct: 108 MEQFALAQEEGDEEKMVMWNKRTTRMTKEQSNDGKKLLRLMGVPVVEAPG-EAEAQCAEL 166

Query: 125 TYIAEKEGFAVTI-ISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
                  G  V    + D D +   +P    + T  E      ++   + VI+  G+  +
Sbjct: 167 CK-----GGLVYATATEDMDALTYATPVLARHLTFSEARKQPIQEFTFKQVIEGLGVTVD 221

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + +  L G   D    I GIG K A  ++++YGN+EN+L N      +   E   E  
Sbjct: 222 QFIDICILCG--CDYTDSIKGIGPKKALAMIKKYGNIENLLKNIEGKHYQAPSEFPYEEV 279

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL-KALEFTKLINR 287
                +  +       P +  ++ +   + +   LI FL K  +F +   R
Sbjct: 280 RNIFKNPDVT------PSSELVDTMKWTEPDEEGLIEFLVKEKQFDEERVR 324


>gi|254567327|ref|XP_002490774.1| 5' to 3' exonuclease, 5' flap endonuclease [Pichia pastoris GS115]
 gi|317376166|sp|C4QZ20|FEN1_PICPG RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|238030570|emb|CAY68494.1| 5' to 3' exonuclease, 5' flap endonuclease [Pichia pastoris GS115]
 gi|328351158|emb|CCA37558.1| flap endonuclease-1 [Pichia pastoris CBS 7435]
          Length = 373

 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 93/278 (33%), Gaps = 49/278 (17%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV-------TFRNEIYPDYK 81
             +G   + + GF    ++ ++         +   +FD             R +   + +
Sbjct: 56  NEEGETTSHLMGFF---YRTIRMVGYGIKPCY---VFDGKPPVLKGGELEKRLKRREEAE 109

Query: 82  ANRPKIPE----------------MLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
             R  + E                +   Q    +   +  GIP ++    EA+   A   
Sbjct: 110 KQRLDMKETGTLADIAKFERRTVRVTREQNDQAKKLLELMGIPYVDAPC-EAEAQCAELA 168

Query: 126 YIAEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                 G  V    S D D +   +P    + T  E       +ID   V++   +   +
Sbjct: 169 K-----GGKVYAAASEDMDTLCYETPYLLRHMTTAEARKLPVTEIDYAKVMEGLEMELPQ 223

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  L G   D    I G+G  TA  L++E+G++E ++         K ++ I E   
Sbjct: 224 FIDLCILLG--CDYCETIKGVGPVTAFKLIKEHGSIEKVVEAIEN--NPKSKQKIPENWP 279

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
               +R+L        I      L  ++ +   L+ ++
Sbjct: 280 YNE-AREL--FLHPEVIPASECELEWKEPDEEALVDYM 314


>gi|295670549|ref|XP_002795822.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb01]
 gi|226284907|gb|EEH40473.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb01]
          Length = 1142

 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 86/295 (29%), Gaps = 52/295 (17%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +   +        T+T R         +      +G +++    +PP    + AD    E
Sbjct: 663 KQGFILPQVIPMGTITRRAVENTWLTASNAKANRVGSELKAMVRAPPGYVFVGADVDSEE 722

Query: 755 LRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
           L I A +           N               D+H   A +I G+         R  A
Sbjct: 723 LWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNDA 772

Query: 802 KTINFSIIYGIS---PFRLATQLRIP------RSEAADYIK---------RYFHRFPGIH 843
           K  N+  IYG        L  Q          +  AA   +         + F   P   
Sbjct: 773 KVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKQVAAKLYEETKGTRTNRKIFSNRPFWR 832

Query: 844 ----EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
                ++        +     T        + +   +   +     + IN  IQ S  D 
Sbjct: 833 GGTESFVFNKLEEFAEQERPRTPVLGAGITEALM-RRFINKGSFMTSRINWAIQSSGVDY 891

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE------ITTASQIIVHSM 948
               +IS+   +    L  ++ + +HDE+ + V + +          + +   +M
Sbjct: 892 LHLLIISMDFLIRRFNLDARLAITVHDEIRYLVRDHDKYRTAMALQVANLWTRAM 946


>gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 54/225 (24%)

Query: 785 IFGVNIEKVS--PQMRRHAKTINFSIIYGISPFRLATQ----LRIPRSEAADYIKRYFHR 838
           +FGV IE+++    +R+  K    ++ YG +   L +     + +   E    +  + + 
Sbjct: 1   MFGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMGALAMGLSEDELPGLVSTWRNA 60

Query: 839 FPGIHEYIEKTKNFV----RQNGYVETIFGRRIHYDEI-----------------NSPKS 877
            P I ++            R+    +    R  +   I                      
Sbjct: 61  NPHITQFWWDVDEAAVRAVRERKETQVGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNK 120

Query: 878 SIR-----------NINERAAINAP------IQGSAADITRRAMISVHKSLEDHKLATKM 920
             R              ER     P      +QG++ DI   AM+ ++K+         +
Sbjct: 121 YGRDGLTYEGVGENKKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKA------GFSI 174

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
           +  +HDE V EVPE + +   + +   M +       L  PL+ +
Sbjct: 175 VFHVHDEAVLEVPEGKSS--VEEVCRIMAEPPSWVHGL--PLRAD 215


>gi|315518944|dbj|BAJ51821.1| exonuclease-like protein [Ralstonia phage RSB2]
          Length = 287

 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 74/217 (34%), Gaps = 33/217 (15%)

Query: 8   FLVDGSSFIYRAFYATPLLSRK---HDGLPV------NAIAGFCNMLWKLLQNSRKESIA 58
            L D       AF A   ++R     DG+         A   FCN +  L   SR+ S A
Sbjct: 1   MLFDADFL---AFQAAANVTRVVEWDDGILTTWADLEAAKEAFCNQVEALRSRSRRWSTA 57

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANR----PKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
                  D     +R ++ P YKA R       P      +  ++   + F        G
Sbjct: 58  KVIMCFTDDY--NWRKDVLPSYKAARSGVGKGKPIAYWLLVEWIKENFECFQ-----RPG 110

Query: 115 FEADDIIATYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            E DD +   +            I+S DKD   +       + T  E  +  E     W 
Sbjct: 111 LEGDDCMGILSTKPSLIDCTHTIIVSPDKDFKTIPGE--FFWMTTGESLVLTEEDANYWH 168

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           +        Q L GD+ D   G PGIG  +AA  L E
Sbjct: 169 M-------YQTLMGDTTDGYAGCPGIGPGSAAEFLAE 198


>gi|149690747|ref|XP_001503097.1| PREDICTED: similar to DNA polymerase subunit gamma-1 (Mitochondrial
            DNA polymerase catalytic subunit) (PolG-alpha) [Equus
            caballus]
          Length = 1219

 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 102/339 (30%), Gaps = 94/339 (27%)

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             R   +      A T+T R         +      +G +++    +PP   L+ AD    
Sbjct: 815  GRYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSEMKAMVQAPPGYVLVGADVDSQ 874

Query: 754  ELRIL-----AHIAKITPLYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I      AH A +      F             D+H   AA +            R 
Sbjct: 875  ELWIAAVLGDAHFAGMHGCT-AFGWMTLQGRKSRGTDLHSKTAATV---------GISRE 924

Query: 800  HAKTINFSIIYGIS-PFR----LATQLRIPRSEAADYIKRYFHRFPGIHEYI-----EKT 849
            HAK  N+  IYG   PF     +    R+ R EAA+  ++ +    G+  Y      E  
Sbjct: 925  HAKIFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWL 984

Query: 850  KNFV------RQNGYVETIFGRRIHYDEINSPKSSIR----------------------- 880
               +       ++G+V     R+I  +                                 
Sbjct: 985  VRELDLPVDRTEDGWVSLQDLRKIQREASRKSNWKKWEVVAERAWMGGTESEMFNKLESI 1044

Query: 881  -------------------------NINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                                          + +N  +Q SA D     ++++    E+  
Sbjct: 1045 ATSDTPCTPVLGCRISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFA 1104

Query: 916  LATKMLLQIHDELVFEVPEEEITTAS------QIIVHSM 948
            +  +  + IHDE+ + V EE+   A+       ++   M
Sbjct: 1105 IDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1143


>gi|296420113|ref|XP_002839625.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635808|emb|CAZ83816.1| unnamed protein product [Tuber melanosporum]
          Length = 1038

 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 87/295 (29%), Gaps = 50/295 (16%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                +        T+T R         +   K  LG +++   I+P     + AD    
Sbjct: 563 DDVGIILPQLIPMGTITRRAVERTWLTASNAKKHRLGSELKAKVIAPQGYAFVGADVDSQ 622

Query: 754 ELRILAHIAKITPLYQVFE------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
           EL I + +                       N  D+H   A  I G+         R +A
Sbjct: 623 ELWIASLLGDAQFKIHGGNALGFMTLEGTKANGTDLHSKTA-NILGI--------SRDNA 673

Query: 802 KTINFSIIYGISPFRLATQLRI------PRSEAADYIKRY---------FHRFPGIHEYI 846
           K  N+  IYG      +T LR           A      Y                  + 
Sbjct: 674 KVFNYGRIYGAGVGFASTLLRAFNPAITDAKCAKIAADLYSKTKGHQTLRKSLSPTRFWH 733

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADI 899
             T++FV           R      + +        ++  RN    + IN  IQ S  D 
Sbjct: 734 GGTESFVFNTLEKFADQERPR-TPVLGAGITEALMRRNLSRNGFLPSRINWAIQSSGVDY 792

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE------ITTASQIIVHSM 948
               ++++   +    L  ++ + +HDE+ + V  E           + +   +M
Sbjct: 793 LHLLIVAMDYLIRKFGLQARLAITVHDEIRYLVKHEHRYKTAMALQVANVWTRAM 847


>gi|16758170|ref|NP_445882.1| flap endonuclease 1 [Rattus norvegicus]
 gi|8896169|gb|AAF81265.1|AF281018_1 flag structure-specific endonuclease [Rattus norvegicus]
          Length = 380

 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 90/299 (30%), Gaps = 56/299 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +    FD      ++         R + 
Sbjct: 54  QNEEGETTSHLMG---MFYRTIRMMENGIKPVYI---FDGKPPQLKSAQLAKRSERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP ++    EA+   A  
Sbjct: 108 EKQLQQAQEAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E      ++  +  V+++ G+  E+
Sbjct: 167 AK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    + GIG K A  L+Q++ ++E I+      K       + + A 
Sbjct: 223 FVDLCILLG--SDYCESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAR 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
              L  ++V              L   + N   L+ F               + R+  +
Sbjct: 281 QLFLEPEVV--------DPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLNKS 331


>gi|226294174|gb|EEH49594.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb18]
          Length = 1183

 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +   +        T+T R         +      +G +++    +PP    + AD    E
Sbjct: 704 KQGFILPQVIPMGTITRRAVENTWLTASNAKANRVGSELKAMVRAPPGYVFVGADVDSEE 763

Query: 755 LRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
           L I A +           N               D+H   A +I G+         R  A
Sbjct: 764 LWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNDA 813

Query: 802 KTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
           K  N+  IYG        L  Q    +P  +  +   + +    G     ++  +     
Sbjct: 814 KVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKEVASKLYKETKGARTNRKQLSDRPFWR 873

Query: 857 GYVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADIT 900
           G  E+             R     + +        +   +     + IN  IQ S  D  
Sbjct: 874 GGTESFVFNKLEEFAEQERPRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYL 933

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
              +IS+   +    L  ++ + +HDE+ + V + +   A+  + 
Sbjct: 934 HLLIISMDFLIRRFNLDARLAITVHDEIRYLVRDHDKYRAAMALQ 978


>gi|311977771|ref|YP_003986891.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
           mimivirus]
 gi|82000308|sp|Q5UQW7|YL386_MIMIV RecName: Full=Putative endonuclease L386
 gi|55417005|gb|AAV50655.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
           mimivirus]
 gi|308204373|gb|ADO18174.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
           mimivirus]
          Length = 473

 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 23/222 (10%)

Query: 10  VDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +D S  IYR  Y    +       +G   + + G   + + +L   + + I  +   +FD
Sbjct: 56  IDASLAIYRMVYGKLKSGPSLVNREGKLTSHLRG---IFYNVLTFLQNDIIPIY---VFD 109

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126
             A   +++     K  R    ++    +  V++     GIP I   G EAD I +    
Sbjct: 110 GKAPDIKSKTIEKRKL-RKDRFKLTSEDIKEVQILLDLMGIPYIIAPG-EADVICSWLCA 167

Query: 127 IAEKEGFAVT--IISTDKDLMQLVSP-----TTCLYDTVKEEKI-DIEHVIKKWGIPPEK 178
             +  G      + + D D++ L +P        L +  K   I  ++ V+   G+   +
Sbjct: 168 RHDSNGKRYVKGVCTEDSDMLPLGAPYMFKDMLGLNNLNKNIIIVKLKDVLGFLGLTMNE 227

Query: 179 MVCLQALTG-DSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            + L  L G D  DNI    GIG K A  L+ EY  L+ +L 
Sbjct: 228 FIDLCVLLGCDYCDNI---KGIGPKNAYKLIVEYRTLDKVLE 266


>gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 256

 Score = 76.2 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 67/198 (33%), Gaps = 19/198 (9%)

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
           T         +   GS +    T  ++    +   + +S  D    T+  V+ I   L  
Sbjct: 50  TLHRNDLPDNVTFTGSVAVDTETMGLNPHRDRLCLVQLSAGDG---TAHLVQIIPTSLGG 106

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
                              LK+   +    KI H  ++D  +L H  GI++       + 
Sbjct: 107 KGYDCPN------------LKRVMADPSITKIMHFARFDVAILQHALGITVSPVVCTKIA 154

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           + ++ +    H +A++ +  L     E+ K +++S         +   +A  +   +  L
Sbjct: 155 ARLVRTFTDRHGLAALCRDMLGV---ELSKQQQTSDWGALELKPEQLAYAASDVLYLHAL 211

Query: 553 WLLLRPKLIVEKLLHVYE 570
           W  +   L  E    + +
Sbjct: 212 WDKMSALLDREGRRELAQ 229


>gi|225684515|gb|EEH22799.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb03]
          Length = 1220

 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            +   +        T+T R         +      +G +++    +PP    + AD    E
Sbjct: 741  KQGFILPQVIPMGTITRRAVENTWLTASNAKANRVGSELKAMVRAPPGYVFVGADVDSEE 800

Query: 755  LRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            L I A +           N               D+H   A +I G+         R  A
Sbjct: 801  LWI-ASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNDA 850

Query: 802  KTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            K  N+  IYG        L  Q    +P  +  +   + +    G     ++  +     
Sbjct: 851  KVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKEVASKLYKETKGARTNRKQLSDRPFWR 910

Query: 857  GYVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADIT 900
            G  E+             R     + +        +   +     + IN  IQ S  D  
Sbjct: 911  GGTESFVFNKLEEFAEQERPRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYL 970

Query: 901  RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
               +IS+   +    L  ++ + +HDE+ + V + +   A+  + 
Sbjct: 971  HLLIISMDFLIRRFNLDARLAITVHDEIRYLVRDHDKYRAAMALQ 1015


>gi|167391034|ref|XP_001739610.1| Flap endonuclease 1-A [Entamoeba dispar SAW760]
 gi|317374900|sp|B0EN90|FEN1_ENTDI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|165896655|gb|EDR24004.1| Flap endonuclease 1-A, putative [Entamoeba dispar SAW760]
          Length = 376

 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 95/283 (33%), Gaps = 55/283 (19%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHD----GLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  +D S  +Y+   A    +        G   + I G      KL+++  K     +
Sbjct: 28  GRVIAIDASILVYQFISAVRDTTGATMVDEFGETTSHIIGTFYRTIKLIESGIK---PVY 84

Query: 61  FAVIFDYPAV-------TFRNEI----------------YPDYKANRPKIPEMLLPQLPL 97
              +FD             R E                     K    +   M   Q   
Sbjct: 85  ---VFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEGDKEQAKKLMKRTARMTKEQSDE 141

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-- 155
           V+   Q  GIP +E    EA+   A         G      + D D + L S        
Sbjct: 142 VKKLLQLMGIPCVEA-NCEAEGTCAALVK----AGKCYATATEDMDALTLGSEYVVRKFS 196

Query: 156 --DTVKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             D  KE   +  +  ++++ G   E+ + L  L G   D    I G+G  TA  L+Q+Y
Sbjct: 197 ASDNKKEPIREYSLSSILEETGFSMEQFIDLCILLG--CDYCDTIKGVGPITAFELIQQY 254

Query: 212 GNLENILINA-------SRIKQKKRRENILEYAETARLS-RKL 246
            ++EN+L +           K K+ RE  L + + A  S  KL
Sbjct: 255 KSIENVLKHLSDKYKVPENWKYKEARELFL-HPDVADFSDYKL 296


>gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage]
          Length = 234

 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 69/215 (32%), Gaps = 41/215 (19%)

Query: 658 EQINCGDNPIIKNILEWRQLSKIKST----YADSLPNHINKRTQRVHTFYSLASTMTGRL 713
            Q    D  I + + E   +     T       +L   ++   +   T     ++ TGR 
Sbjct: 7   LQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRW 66

Query: 714 ASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTKKLI 746
           A       N+P  T   + I                           R   I+P  KKL+
Sbjct: 67  AGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPXGKKLV 126

Query: 747 SADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            +D S IE R+LA +A        F         D++++  A  F +    V+   R+  
Sbjct: 127 ISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXNVTKAQRQIG 186

Query: 802 KTINFSIIYGISP-----FRLATQLRIPRSEAADY 831
           K +   + YG        F LA  L +     A  
Sbjct: 187 KVMELGLGYGGGVAAFLTFALAYGLDLDEXAEAAL 221


>gi|156041228|ref|XP_001587600.1| hypothetical protein SS1G_11593 [Sclerotinia sclerotiorum 1980]
 gi|154695976|gb|EDN95714.1| hypothetical protein SS1G_11593 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1146

 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 87/282 (30%), Gaps = 46/282 (16%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            T  +        T+T R         +   K  +G +++    +PP    + AD    E
Sbjct: 669 ETGYILPQVIPMGTVTRRAVENTWLTASNAKKNRVGSELKSMIKAPPGYCFVGADVDSEE 728

Query: 755 LRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
           L I A +           N               D+H   A+ I G+         R  A
Sbjct: 729 LWI-ASLVGDAQFKLHGGNAVGFMTLEGTKAAGTDLHSRTAS-ILGIT--------RNDA 778

Query: 802 KTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHE------------ 844
           K  N+  IYG        L  Q    +  SE ++     +    G+              
Sbjct: 779 KVFNYGRIYGAGLKFASTLLRQFNPSLSESETSETAANLYKATKGVKTNRKALHPGPFWR 838

Query: 845 -----YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
                ++        +     T          + +     +     + IN  IQ S  D 
Sbjct: 839 GGTESFVFNKLEEFAEQEKPRTPVLGAGITQALMAR-YVSKGGFMTSRINWAIQSSGVDY 897

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
               ++S+   +  + +  ++ + +HDE+ + V +++   A+
Sbjct: 898 LHLLIVSMDYLIRRYNINARLAITVHDEIRYLVKDDDKYRAA 939


>gi|260436505|ref|ZP_05790475.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
 gi|260414379|gb|EEX07675.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
          Length = 225

 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 75/218 (34%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      W ++       +       +     +   + I+  + +      V  + I 
Sbjct: 24  VFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDR------VACVRIG 77

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L    + +              LK+  E     K+ H  ++D   L    GI +      
Sbjct: 78  LGQTEAPN--------------LKRLLEAPTVEKVFHFARFDVAALAAGLGIEVNPVFCT 123

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    +D+++D+Q+  +A  +  
Sbjct: 124 KVGSRLGRTYTPRHGLKDLVMELVGV---ELDKGAQSSDWGRVDELTDAQLA-YAANDVR 179

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E    + +R     + VV++++ 
Sbjct: 180 YLLPARERLEKMLRREGRWDLAQRC-FQCVPVVAELDR 216


>gi|296809768|ref|XP_002845222.1| DNA polymerase gamma [Arthroderma otae CBS 113480]
 gi|238842610|gb|EEQ32272.1| DNA polymerase gamma [Arthroderma otae CBS 113480]
          Length = 1133

 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 66/388 (17%), Positives = 119/388 (30%), Gaps = 52/388 (13%)

Query: 597 QVSAEISKNLLSLEENIY----DLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWK 651
            +S E +  L   +E++Y       G     +SP   G +  F   K  S         +
Sbjct: 560 DMSEETNPALREDKEHVYFKLPHKDGPDARCASPLSKGYLQYFESGKLSSQFPLAKEALE 619

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
             A     I+  D    + ++  + L K +S+         N +   +        T+T 
Sbjct: 620 MNASCSYWISARDRITSQMVVYKKDLEKAESSGKGL---SSNSKLGFILPQVIPMGTITR 676

Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771
           R         +      +G +++    +PP    + AD    EL I A +          
Sbjct: 677 RAVENTWLTASNAKPNRVGSELKAMVRAPPGYVFVGADVDSEELWI-ASLVGDAQFQLHG 735

Query: 772 EN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PF 815
            N               D+H   A +I G+         R +AK  N+  IYG       
Sbjct: 736 GNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNNAKVFNYGRIYGAGLKFAA 786

Query: 816 RLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI---------FG 864
            L  Q    +  +E      + +    G               G  E+            
Sbjct: 787 TLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRMLSENPFLRGGTESFVFNKLEEFAEQ 846

Query: 865 RRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
            R     + +        +   +     + IN  IQ S  D     +IS+   +    L 
Sbjct: 847 ERPRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLIISMDYLIRRFNLD 906

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIV 945
            ++ + +HDE+ + V E +   A+  + 
Sbjct: 907 ARLAITVHDEIRYVVKETDKYKAAMALQ 934


>gi|303314467|ref|XP_003067242.1| DNA polymerase gamma, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240106910|gb|EER25097.1| DNA polymerase gamma, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 1142

 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 87/290 (30%), Gaps = 50/290 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 670 ILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMVKAPPGYVFVGADVDSEELWI- 728

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +   +       N               D+H   A +I G+         R +AK  N
Sbjct: 729 ASLVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNNAKVFN 779

Query: 806 FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           +  IYG        L  Q    I   +        +    G     +   +     G  E
Sbjct: 780 YGRIYGAGLKFAATLLRQFNPSISDDQTKVIAANLYKETKGTRTIRKTISDSPFWRGGTE 839

Query: 861 TI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAM 904
           +             R     + +        +   +     + IN  IQ S  D     +
Sbjct: 840 SFVFNKLEEFAEQERPRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLI 899

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEE------ITTASQIIVHSM 948
           IS+   +    L  ++ + +HDE+ + V EE+          + I   +M
Sbjct: 900 ISMDFLVRRFNLNARLAISVHDEIRYLVKEEDKYRAAMALQVANIWTRAM 949


>gi|256084395|ref|XP_002578415.1| DNA polymerase gamma [Schistosoma mansoni]
 gi|238663787|emb|CAZ34653.1| DNA polymerase gamma, putative [Schistosoma mansoni]
          Length = 870

 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 95/302 (31%), Gaps = 55/302 (18%)

Query: 686 DSLPNHI-NKRTQR-------VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737
           D LP ++ N ++         +        T++ R         +   +  LG +I+   
Sbjct: 495 DQLPKNVLNDQSYNCKANYGAILPQVITCGTVSRRAVEPLWLTASNADENRLGSEIKAMV 554

Query: 738 ISPPTKKLISADYSQIELRILAHI----------AKITPLYQVFE--NSLDIHRMVAAEI 785
            SPP    + AD    E+ I A I               +       +  D+H  +A E+
Sbjct: 555 QSPPGYVFVGADVDSQEMWIAALIGDAGVGFQGSTPYGWMTLQGNKLDGTDLHTKIAKEM 614

Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGIS----PFRLATQLRIPRSEAADYIKRYFHRFPG 841
                       R  +K +N+S +YG         LA    I   +A+   K+ F    G
Sbjct: 615 ---------GIKRSESKVLNYSRLYGSGIEFASHLLAKFCNITVKQASLKAKQLFQITKG 665

Query: 842 IHEYIE--------KTKNFVRQNG-----YVETIFGRRIHYDEINSPKSSIRNINERA-- 886
               ++               Q G     + +     R          + +         
Sbjct: 666 RRTIVDSFPSDDGTSISTSKWQGGSESAVFNQLESIARSPEPRTPFLNAQLTRALNPKLV 725

Query: 887 -------AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939
                   +N  +Q SA D     ++ +   +   K+  ++ + IHDEL +  P+  I  
Sbjct: 726 KDDFLPSRVNWVVQSSAVDYLHCMLVLMRWLINKFKIPARLCISIHDELRYICPKSHIYQ 785

Query: 940 AS 941
            +
Sbjct: 786 VA 787


>gi|317374910|sp|B4FHY0|FEN1_MAIZE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|194695278|gb|ACF81723.1| unknown [Zea mays]
          Length = 379

 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 104/280 (37%), Gaps = 55/280 (19%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN-EIYPDYKANRPK 86
               G   + + G  N   +LL+   K     +   +FD      +  E+   Y + R  
Sbjct: 55  TNEAGEVTSHLQGMFNRTIRLLEAGIK---PVY---VFDGKPPDMKKQELAKRY-SKRDD 107

Query: 87  IPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIAT 123
             + L   + +                        +   +  G+P +E    EA+   A 
Sbjct: 108 ATKDLTEAVEVGDKDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPS-EAEAECAA 166

Query: 124 YTYIAEKEGFAVT-IISTDKDLMQLVSPT--TCLYDTVKEE----KIDIEHVIKKWGIPP 176
                      V  + S D D +   +P     L D   ++    + D+  V+++  +  
Sbjct: 167 LCI-----NDKVFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTM 221

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + L  L G   D    I GIG +TA  L++++G++E+IL N ++ + +   +    Y
Sbjct: 222 DQFIDLCILCG--CDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDW--PY 277

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            E  RL ++         +T+ +  L     +   LISFL
Sbjct: 278 QEARRLFKE-------PNVTLDIPELKWTAPDEEGLISFL 310


>gi|320037536|gb|EFW19473.1| DNA polymerase gamma [Coccidioides posadasii str. Silveira]
          Length = 1142

 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 87/290 (30%), Gaps = 50/290 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 670 ILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMVKAPPGYVFVGADVDSEELWI- 728

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +   +       N               D+H   A +I G+         R +AK  N
Sbjct: 729 ASLVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNNAKVFN 779

Query: 806 FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           +  IYG        L  Q    I   +        +    G     +   +     G  E
Sbjct: 780 YGRIYGAGLKFAATLLRQFNPSISDDQTKVIAANLYKETKGTRTIRKTISDSPFWRGGTE 839

Query: 861 TI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAM 904
           +             R     + +        +   +     + IN  IQ S  D     +
Sbjct: 840 SFVFNKLEEFAEQERPRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLI 899

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEE------ITTASQIIVHSM 948
           IS+   +    L  ++ + +HDE+ + V EE+          + I   +M
Sbjct: 900 ISMDFLVRRFNLNARLAISVHDEIRYLVKEEDKYRAAMALQVANIWTRAM 949


>gi|317034839|ref|XP_001401279.2| DNA polymerase gamma [Aspergillus niger CBS 513.88]
          Length = 1135

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 91/298 (30%), Gaps = 48/298 (16%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           + R   +        T+T R         +      +G +++    +PP    + AD   
Sbjct: 662 DHRLGFILPQIIPMGTITRRAVENTWLTASNAKGNRVGSELKAMIKAPPGYSFVGADVDS 721

Query: 753 IELRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I A +           N               D+H   A +I G+         R 
Sbjct: 722 QELWI-ASLVGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-QILGI--------SRN 771

Query: 800 HAKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHE---------- 844
            AK  N+  IYG      AT LR     +   +  +   + +    G             
Sbjct: 772 DAKVFNYGRIYGAGVKFAATLLRQFNPSMSERQTQEVATKLYKETKGTRTTRRILCEGPF 831

Query: 845 -------YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
                  ++        +     T        + +   +   +     + IN  IQ S  
Sbjct: 832 WRGGTESFVFNKLEEFAEQERPRTPTLGAGITEALM-RRFINKGSFMTSRINWAIQSSGV 890

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI--TTASQIIVHSMEKACL 953
           D     ++++   +    +A ++ + +HDE+ + V +E+      +  + +   +A  
Sbjct: 891 DYLHLLIVAMDYLIRRFNIAARLAITVHDEIRYLVKDEDKYRAALALQVANVWTRAMF 948


>gi|254422868|ref|ZP_05036586.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
 gi|196190357|gb|EDX85321.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
          Length = 207

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 28/222 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           ++ +     Q +++     + +    T  ++    +   I +       D    V  I  
Sbjct: 5   EVCDYDLTPQLLERYIQADAIAVDTETMGLNPLRDRLCLIQLC------DPGGYVCAIRT 58

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFED 488
           +    ++ +              LK+  E ++  KI H  ++D   L  + GI       
Sbjct: 59  ERGQSSAPN--------------LKQLLEEKNITKIFHFARFDLATLQHHLGIVTAPVFC 104

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENS 546
             + S +  +   SH + S+ ++ +     E+ KS++SS       +SD Q+  +A  + 
Sbjct: 105 TKIASKIARTYSPSHGLKSLVKELIGI---ELDKSQQSSDWGNAAALSDEQLS-YAANDV 160

Query: 547 NVILQLWLLLRPKLIVEKLLHVYER-LDKPMIDVVSQMEITG 587
             +  L   L   L  E    + ++ LD   + V   +   G
Sbjct: 161 RYLYVLQNKLTEMLKREGRWTLAKQCLDCLPVFVELDLRQFG 202


>gi|194377686|dbj|BAG63206.1| unnamed protein product [Homo sapiens]
          Length = 344

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 105 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 159

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 160 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 217

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A    L  ++        +      L   + N   
Sbjct: 218 KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEV--------LDPESVELKWSEPNEEE 269

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           LI F               + R++ +              +  + +     E E    T 
Sbjct: 270 LIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTK 329

Query: 326 IKT 328
            K 
Sbjct: 330 KKA 332


>gi|81883819|sp|Q5XIP6|FEN1_RAT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|53733451|gb|AAH83630.1| Fen1 protein [Rattus norvegicus]
 gi|149062370|gb|EDM12793.1| flap structure-specific endonuclease 1 [Rattus norvegicus]
          Length = 380

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 90/299 (30%), Gaps = 56/299 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +    FD      ++         R + 
Sbjct: 54  QNEEGETTSHLMG---MFYRTIRMMENGIKPVYI---FDGKPPQLKSGELAKRSERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP ++    EA+   A  
Sbjct: 108 EKQLQQAQEAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E      ++  +  V+++ G+  E+
Sbjct: 167 AK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    + GIG K A  L+Q++ ++E I+      K       + + A 
Sbjct: 223 FVDLCILLG--SDYCESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAR 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
              L  ++        +      L   + N   L+ F               + R+  +
Sbjct: 281 QLFLEPEV--------LDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLNKS 331


>gi|302684645|ref|XP_003032003.1| hypothetical protein SCHCODRAFT_67730 [Schizophyllum commune H4-8]
 gi|300105696|gb|EFI97100.1| hypothetical protein SCHCODRAFT_67730 [Schizophyllum commune H4-8]
          Length = 1257

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 93/290 (32%), Gaps = 57/290 (19%)

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            K+   +        T+T R         +   K  +G +++    +PP   ++ AD    
Sbjct: 796  KQWGVIVPQVITMGTVTRRAIEKTWLTASNAKKNRVGSELKAMVRAPPGYAIVGADVDSE 855

Query: 754  ELRILAHIA----KITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            EL I + +      I     +             D+H   A+ I G+         R  A
Sbjct: 856  ELWISSCMGDAQFGIHGATALGWMTLEGTKSAGTDLHSKTAS-ILGI--------SRDQA 906

Query: 802  KTINFSIIYGIS-------------------PFRLATQLRIPRSEAADYIKRYFHR---F 839
            K  N+S IYG                       +LA  L         +    F R   F
Sbjct: 907  KVFNYSRIYGAGMRHAVLLLMQSNASMKHEEAQKLAENLYASTKGKNTHRTDLFERKFWF 966

Query: 840  PGIHEYI-EKTKNFVRQN-------GYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
             G   Y+  K +     +       G   T    + +                 + IN  
Sbjct: 967  GGSESYVFNKLEAIALSDKPETPALGCGVTHALVKEYLPTGFGSDYM------PSRINWV 1020

Query: 892  IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
            +Q S  D     ++S+   ++ + +  + L+ +HDEL + V E++   A+
Sbjct: 1021 VQSSGVDYLHMLIVSMDHLIQKYDIKARYLISVHDELRYLVEEKDRYRAA 1070


>gi|119174697|ref|XP_001239691.1| hypothetical protein CIMG_09312 [Coccidioides immitis RS]
          Length = 1142

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 87/290 (30%), Gaps = 50/290 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 670 ILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMVKAPPGYVFVGADVDSEELWI- 728

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +   +       N               D+H   A +I G+         R +AK  N
Sbjct: 729 ASLVGDSQFQIHGGNAIGFMTLEGTKAAGTDLHSKTA-KILGI--------SRNNAKVFN 779

Query: 806 FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860
           +  IYG        L  Q    I   +        +    G     +   +     G  E
Sbjct: 780 YGRIYGAGLKFAATLLRQFNPSISDDQTKVIAANLYKETKGTRTIRKTISDSPFWRGGTE 839

Query: 861 TI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADITRRAM 904
           +             R     + +        +   +     + IN  IQ S  D     +
Sbjct: 840 SFVFNKLEEFAEQERPRTPVLGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLI 899

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEE------ITTASQIIVHSM 948
           IS+   +    L  ++ + +HDE+ + V EE+          + I   +M
Sbjct: 900 ISMDFLVRRFNLNARLAISVHDEIRYLVKEEDKYRAAMALQVANIWTRAM 949


>gi|61680058|pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
 gi|61680059|pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
 gi|61680060|pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
          Length = 379

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 140 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 194

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 195 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 252

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A    L  ++        +      L   + N   
Sbjct: 253 KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEV--------LDPESVELKWSEPNEEE 304

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           LI F               + R++ +              +  + +     E E    T 
Sbjct: 305 LIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTK 364

Query: 326 IKT 328
            K 
Sbjct: 365 KKA 367


>gi|195629924|gb|ACG36603.1| flap endonuclease 1a [Zea mays]
          Length = 379

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 104/280 (37%), Gaps = 55/280 (19%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN-EIYPDYKANRPK 86
               G   + + G  N   +LL+   K     +   +FD      +  E+   Y + R  
Sbjct: 55  TNEAGEVTSHLQGMFNRTIRLLEAGIK---PVY---VFDGKPPDMKKQELAKRY-SKRDD 107

Query: 87  IPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIAT 123
             + L   + +                        +   +  G+P +E    EA+   A 
Sbjct: 108 ATKDLTEAVEVGDKDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPS-EAEAECAA 166

Query: 124 YTYIAEKEGFAVT-IISTDKDLMQLVSPT--TCLYDTVKEE----KIDIEHVIKKWGIPP 176
                      V  + S D D +   +P     L D   ++    + D+  V+++  +  
Sbjct: 167 LCI-----NDKVFAVASEDMDSLTFGAPRXLRHLMDPSSKKIPVMEFDVAKVLEELELTM 221

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + L  L G   D    I GIG +TA  L++++G++E+IL N ++ + +   +    Y
Sbjct: 222 DQFIDLCILCG--CDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDW--PY 277

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            E  RL ++         +T+ +  L     +   LISFL
Sbjct: 278 QEARRLFKE-------PNVTLDIPELKWTAPDEEGLISFL 310


>gi|114637928|ref|XP_001149285.1| PREDICTED: similar to Chain X, Crystal Structure Of The Human
           Fen1-Pcna Complex isoform 1 [Pan troglodytes]
          Length = 316

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 77  CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 131

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 132 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 189

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A    L  ++        +      L   + N   
Sbjct: 190 KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEV--------LDPESVELKWSEPNEEE 241

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           LI F               + R++ +              +  + +     E E    T 
Sbjct: 242 LIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTK 301

Query: 326 IKT 328
            K 
Sbjct: 302 KKA 304


>gi|297267695|ref|XP_002799575.1| PREDICTED: flap endonuclease 1-like isoform 2 [Macaca mulatta]
 gi|297267697|ref|XP_001118506.2| PREDICTED: flap endonuclease 1-like isoform 1 [Macaca mulatta]
 gi|75076152|sp|Q4R5U5|FEN1_MACFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|67970375|dbj|BAE01530.1| unnamed protein product [Macaca fascicularis]
          Length = 380

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A    L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPSKYPVPENWLHKEAHQLFLKPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           L+ F               + R++ +              +  + +     E E    T 
Sbjct: 306 LVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTK 365

Query: 326 IKT 328
            K 
Sbjct: 366 KKA 368


>gi|323512647|gb|ADX88101.1| DNA polymerase [Vibrio phage ICP1_2006_D]
 gi|323512875|gb|ADX88328.1| DNA polymerase [Vibrio phage ICP1_2006_C]
 gi|323513103|gb|ADX88555.1| DNA polymerase [Vibrio phage ICP1_2006_B]
 gi|323513330|gb|ADX88781.1| DNA polymerase [Vibrio phage ICP1_2006_A]
 gi|323513557|gb|ADX89007.1| DNA polymerase [Vibrio phage ICP1_2005_A]
          Length = 903

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 98/293 (33%), Gaps = 31/293 (10%)

Query: 655 QDLEQINCGDNPIIKNILEWRQLSK-------IKSTYADSLPNHINKRTQRVHTFYSLAS 707
           +    +   D  +   I++W  L         I  T      NH   +            
Sbjct: 495 ELCPNLEKIDGEMASKIVKWLSLRNRRSVIKAIDETKETGWLNHPRLKKDGKLPARYSGL 554

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T T R                LG ++R  F  P     +  D S +E    A+ A     
Sbjct: 555 TNTNRRKHSVI-ANIPGSDALLGHEMRSLFTVPEGFWQVGIDGSNLEGFCAANAAFPFDN 613

Query: 768 YQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
              +   S D H   A          VS   R   K I + ++YG    ++++ L I + 
Sbjct: 614 GAYYRGLSGDPHTENAKAYSKAAGRTVS---RSEGKGITYGVLYGAQAAKVSSMLGISKD 670

Query: 827 EAADYIKRYFHR---FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           +A + I  ++       G  E++EK      +  Y+  I  R+I               +
Sbjct: 671 QAQNVINAFWDTNYGLKGCKEWLEKYWESTGKK-YILGIDKRKIWTR------------S 717

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI---HDELVFEVP 933
           + + +NA +Q   A     A I  H+   +  L  K + +I   HDE   +VP
Sbjct: 718 KHSLLNAYLQSMGAIGMDLAGILWHERALEEGLLEKGVARIIYYHDEYQLQVP 770


>gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1]
 gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 524

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 104/372 (27%), Gaps = 106/372 (28%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-------- 726
            + +K  +    ++         R    + +    TGR A     LQN+P          
Sbjct: 139 AEAAKASTAKLTAMVKCACDDG-RARGLHLVYGAGTGRWAGRLIQLQNLPRGVIKKADLA 197

Query: 727 --------------------TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
                                 +   +R   I       I +D+S IE RI A +A    
Sbjct: 198 IPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEW 257

Query: 767 LYQVFEN-----SLDIHRMVAAEI-------FGVNIEKVSPQMRRHAKTINFSIIYGISP 814
             Q F +       D++ + A +I       +   + + SP+   + K    ++ +G   
Sbjct: 258 KIQAFRDFDAGTGRDLYLIGAEKILTLLKVLYAHPLNENSPERTPYGKVPELALGFGGGV 317

Query: 815 FRLATQ-----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ-----NGYVETIFG 864
               +      +++   EA      +    P +       ++            V T  G
Sbjct: 318 GAFQSMAAIYGMKVTDEEADQIKVAWREAHPRVVALWRNMEDAAFNAISNPGRVVSTAGG 377

Query: 865 R-----------------------------RIHYDEINSPKSSIRNINERAAINAP---- 891
           R                             R     I   +  +++     A+N+     
Sbjct: 378 RIKYVVKGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMAVNSITRKW 437

Query: 892 --------------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--E 935
                         IQ  A D+        +  L+       +++ +HDE + EV +   
Sbjct: 438 ERCTTYGGSLAENAIQAIARDLLA------NALLKLEAAGYPVVIHVHDEALAEVRKGVG 491

Query: 936 EITTASQIIVHS 947
            +     I+  +
Sbjct: 492 SVDEFKSIMCDT 503


>gi|323513790|gb|ADX89239.1| DNA polymerase [Vibrio phage ICP1_2001_A]
 gi|323514018|gb|ADX89466.1| DNA polymerase [Vibrio phage ICP1_2004_A]
          Length = 903

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 98/293 (33%), Gaps = 31/293 (10%)

Query: 655 QDLEQINCGDNPIIKNILEWRQLSK-------IKSTYADSLPNHINKRTQRVHTFYSLAS 707
           +    +   D  +   I++W  L         I  T      NH   +            
Sbjct: 495 ELCPNLEKIDGEMASKIVKWLSLRNRRSVIKAIDETKETGWLNHPRLKKDGKLPARYSGL 554

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T T R                LG ++R  F  P     +  D S +E    A+ A     
Sbjct: 555 TNTNRRKHSVI-ANIPGSDALLGHEMRSLFTVPEGFWQVGIDGSNLEGFCAANAAFPFDN 613

Query: 768 YQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
              +   S D H   A          VS   R   K I + ++YG    ++++ L I + 
Sbjct: 614 GAYYRGLSGDPHTENAKAYSKAAGRTVS---RSEGKGITYGVLYGAQAAKVSSMLGISKD 670

Query: 827 EAADYIKRYFHR---FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           +A + I  ++       G  E++EK      +  Y+  I  R+I               +
Sbjct: 671 QAQNVINAFWDTNYGLKGCKEWLEKYWESTGKK-YILGIDKRKIWTR------------S 717

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI---HDELVFEVP 933
           + + +NA +Q   A     A I  H+   +  L  K + +I   HDE   +VP
Sbjct: 718 KHSLLNAYLQSMGAIGMDLAGILWHERALEEGLLEKGVARIIYYHDEYQLQVP 770


>gi|325171024|ref|YP_004250999.1| DNA polymerase [Vibrio phage ICP1]
 gi|323512419|gb|ADX87874.1| DNA polymerase [Vibrio phage ICP1]
          Length = 903

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 98/293 (33%), Gaps = 31/293 (10%)

Query: 655 QDLEQINCGDNPIIKNILEWRQLSK-------IKSTYADSLPNHINKRTQRVHTFYSLAS 707
           +    +   D  +   I++W  L         I  T      NH   +            
Sbjct: 495 ELCPNLEKIDGEMASKIVKWLSLRNRRSVIKAIDETKETGWLNHPRLKKDGKLPARYSGL 554

Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           T T R                LG ++R  F  P     +  D S +E    A+ A     
Sbjct: 555 TNTNRRKHSVI-ANIPGSDALLGHEMRSLFTVPEGFWQVGIDGSNLEGFCAANAAFPFDN 613

Query: 768 YQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826
              +   S D H   A          VS   R   K I + ++YG    ++++ L I + 
Sbjct: 614 GAYYRGLSGDPHTENAKAYSKAAGRTVS---RSEGKGITYGVLYGAQAAKVSSMLGISKD 670

Query: 827 EAADYIKRYFHR---FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
           +A + I  ++       G  E++EK      +  Y+  I  R+I               +
Sbjct: 671 QAQNVINAFWDTNYGLKGCKEWLEKYWESTGKK-YILGIDKRKIWTR------------S 717

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI---HDELVFEVP 933
           + + +NA +Q   A     A I  H+   +  L  K + +I   HDE   +VP
Sbjct: 718 KHSLLNAYLQSMGAIGMDLAGILWHERALEEGLLEKGVARIIYYHDEYQLQVP 770


>gi|4758356|ref|NP_004102.1| flap endonuclease 1 [Homo sapiens]
 gi|114637922|ref|XP_001149352.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan troglodytes]
 gi|114637924|ref|XP_001149410.1| PREDICTED: flap structure-specific endonuclease 1 isoform 3 [Pan
           troglodytes]
 gi|114637926|ref|XP_508480.2| PREDICTED: flap structure-specific endonuclease 1 isoform 5 [Pan
           troglodytes]
 gi|297688500|ref|XP_002821719.1| PREDICTED: flap endonuclease 1-like isoform 1 [Pongo abelii]
 gi|297688502|ref|XP_002821720.1| PREDICTED: flap endonuclease 1-like isoform 2 [Pongo abelii]
 gi|332836633|ref|XP_001149490.2| PREDICTED: flap endonuclease 1 isoform 4 [Pan troglodytes]
 gi|729475|sp|P39748|FEN1_HUMAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNase
           IV; AltName: Full=Flap structure-specific endonuclease
           1; AltName: Full=Maturation factor 1; Short=MF1;
           Short=hFEN-1
 gi|21668123|gb|AAM74238.1|AF523117_1 flap structure-specific endonuclease 1 [Homo sapiens]
 gi|642090|gb|AAA91331.1| endonuclease [Homo sapiens]
 gi|704377|gb|AAB32522.1| DNase IV=nuclear 42 kda 5' -> 3' exonuclease [human, HeLa cells,
           Peptide, 380 aa]
 gi|3169155|gb|AAC23394.1| FEN1_HUMAN [Homo sapiens]
 gi|3980293|emb|CAA54166.1| flap endonuclease-1 [Homo sapiens]
 gi|12653113|gb|AAH00323.1| Flap structure-specific endonuclease 1 [Homo sapiens]
 gi|49168608|emb|CAG38799.1| FEN1 [Homo sapiens]
 gi|54695918|gb|AAV38331.1| flap structure-specific endonuclease 1 [Homo sapiens]
 gi|60813555|gb|AAX36265.1| flap structure-specific endonuclease 1 [synthetic construct]
 gi|60813577|gb|AAX36266.1| flap structure-specific endonuclease 1 [synthetic construct]
 gi|61355090|gb|AAX41100.1| flap structure-specific endonuclease 1 [synthetic construct]
 gi|61355958|gb|AAX41194.1| flap structure-specific endonuclease 1 [synthetic construct]
 gi|61362985|gb|AAX42314.1| flap structure-specific endonuclease 1 [synthetic construct]
 gi|119594378|gb|EAW73972.1| flap structure-specific endonuclease 1 [Homo sapiens]
 gi|189053461|dbj|BAG35627.1| unnamed protein product [Homo sapiens]
 gi|208968397|dbj|BAG74037.1| flap structure-specific endonuclease 1 [synthetic construct]
          Length = 380

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A    L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           LI F               + R++ +              +  + +     E E    T 
Sbjct: 306 LIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTK 365

Query: 326 IKT 328
            K 
Sbjct: 366 KKA 368


>gi|212533271|ref|XP_002146792.1| DNA polymerase gamma [Penicillium marneffei ATCC 18224]
 gi|210072156|gb|EEA26245.1| DNA polymerase gamma [Penicillium marneffei ATCC 18224]
          Length = 1122

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 88/304 (28%), Gaps = 48/304 (15%)

Query: 670 NILEWRQLSKIKSTYADSL--PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
            I    ++      Y D L       K+   +        T+T R         +     
Sbjct: 630 WISARDRIMSQLVVYEDDLNGQKEAKKQLGFILPQIIPMGTITRRAVENTWLTASNAKGN 689

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-------------S 774
            +G +++    +PP    + AD    EL I A +           N              
Sbjct: 690 RVGSELKAMIKAPPGYVFVGADVDSQELWI-ASLVGDAQFQLHGGNAIGFMTLEGSKAAG 748

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--IPRSEAA 829
            D+H   A+ I G+         R  AK  N+  IYG        L  Q    +   E +
Sbjct: 749 TDLHSRTAS-ILGI--------SRNDAKVFNYGRIYGAGLKFASTLLRQFNPTLTEKETS 799

Query: 830 DYIKRYFHRFPGIHE-----------------YIEKTKNFVRQNGYVETIFGRRIHYDEI 872
               + +    G                    ++        +     T        + +
Sbjct: 800 QIASKLYKETKGTRTTRKILNDGPFWRGGTESFVFNKLEEFAEQERPRTPALGAGITEAL 859

Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
              +   +     + IN  IQ S  D     + ++   +    +  ++ + +HDE+ + V
Sbjct: 860 M-RRFINKGSFMTSRINWAIQSSGVDYLHLLITAMDFLIRRFNIDARLAITVHDEIRYLV 918

Query: 933 PEEE 936
            EE+
Sbjct: 919 KEED 922


>gi|61365237|gb|AAX42675.1| flap structure-specific endonuclease 1 [synthetic construct]
 gi|61365242|gb|AAX42676.1| flap structure-specific endonuclease 1 [synthetic construct]
 gi|61369466|gb|AAX43341.1| flap structure-specific endonuclease 1 [synthetic construct]
          Length = 381

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A    L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           LI F               + R++ +              +  + +     E E    T 
Sbjct: 306 LIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTK 365

Query: 326 IKT 328
            K 
Sbjct: 366 KKA 368


>gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 209

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 77/220 (35%), Gaps = 28/220 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           K++      + + +     + +    T  ++    +   I +   +              
Sbjct: 7   KVLQEDLSDEILSRYLKADAIAVDTETMGLNPHRDRLCLIQLCDPEGYVTA--------- 57

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFED 488
                  + + G+    K     LK+  E  +  K+ H  ++D   L  + GI       
Sbjct: 58  ------IRVTKGQQEAPK-----LKQLMEASNITKVFHFARFDVAQLRHHFGIETTPIFC 106

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENS 546
             + S +  +  SSH + S+  +       E+ K+ +SS     DK+S+ Q+  +A  + 
Sbjct: 107 TKIASKLARTYTSSHGLKSLVLELEGV---ELDKTAQSSDWGNADKLSEEQLS-YAANDV 162

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
             +L +   L   L  E  + +        + V+  +++ 
Sbjct: 163 RYLLGVKEKLISMLNRENRMELARNC-FNCLPVLVSLDLQ 201


>gi|67515517|ref|XP_657644.1| hypothetical protein AN0040.2 [Aspergillus nidulans FGSC A4]
 gi|40746203|gb|EAA65359.1| hypothetical protein AN0040.2 [Aspergillus nidulans FGSC A4]
 gi|259489774|tpe|CBF90322.1| TPA: DNA polymerase gamma (AFU_orthologue; AFUA_5G12640)
           [Aspergillus nidulans FGSC A4]
          Length = 1134

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 89/282 (31%), Gaps = 42/282 (14%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +++   +        T+T R         +      +G +++    +PP    + AD   
Sbjct: 658 DQKLGYILPQIIPMGTITRRAVENTWLTASNAKANRVGSELKAMIKAPPGYAFVGADVDS 717

Query: 753 IELRILAHIA------------KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
            EL I + I                 L        D+H   A +I G+         R  
Sbjct: 718 QELWIASLIGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA-KILGI--------SRND 768

Query: 801 AKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
           AK  N+  IYG      AT LR     +   E  +   + +    G         +    
Sbjct: 769 AKVFNYGRIYGAGVKFAATLLRQFNPSMSERETQEVASKLYKETKGAKTTRRLLSDNPFW 828

Query: 856 NGYVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADI 899
            G  E+             R     + +        +   R     + IN  IQ S  D 
Sbjct: 829 RGGTESFVFNKLEEFADQERPRTPVLGAGITEALMRRFINRGSFMTSRINWAIQSSGVDY 888

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
               +I++   +    +  ++ + +HDE+ + V E++   A+
Sbjct: 889 LHMLIIAMDYLIRRFNIQARLAITVHDEIRYLVKEQDKYRAA 930


>gi|26335423|dbj|BAC31412.1| unnamed protein product [Mus musculus]
          Length = 380

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALAK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  V+++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATT 291
           L+ F               + R++ +
Sbjct: 306 LVKFMCGEKQFSEERIRSGVKRLSKS 331


>gi|296218462|ref|XP_002755459.1| PREDICTED: flap endonuclease 1 [Callithrix jacchus]
          Length = 380

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKRLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASESKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A    L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           L+ F               + R++ +              +  + +     E E    T 
Sbjct: 306 LVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPRGSTK 365

Query: 326 IKT 328
            K 
Sbjct: 366 KKA 368


>gi|189202272|ref|XP_001937472.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187984571|gb|EDU50059.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1222

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 100/294 (34%), Gaps = 46/294 (15%)

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            V FD      R +     K +R    E+    +   +     FG+P I     EA+   A
Sbjct: 912  VDFDEELKQLRAQQ----KKDRRDADEVTQTMIAECQQLLTLFGLPYITAP-MEAEAQCA 966

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPE 177
                +   +G    I++ D D    +   T +Y  +       E    + +  ++ +  E
Sbjct: 967  ELVNLGLVDG----IVTDDSDTF--LFGGTRVYKNMFNAAKFVECYLAQDLTSEFNLTRE 1020

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ +  L G   D   GIPGIG  TA  +L E+  LE        ++  + ++   E A
Sbjct: 1021 KMIDIAQLLG--SDYTTGIPGIGPVTALEILSEFQTLEAFRTWWDGVQSGQIKK--DEDA 1076

Query: 238  ETARLSR------------------KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
            +     +                  ++        +    E       +   L +FL   
Sbjct: 1077 KNPFRKKFRKNQGTKLFLPPNFPDPRVTDAYLHPEVDSDPEPFQWGVPDLAALRTFLS-- 1134

Query: 280  EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
                  +++  +++     + PV+ D+N  E +G         D  +    F+ 
Sbjct: 1135 ------SQIGWSWERTDEVLVPVIRDMNRREKEGTQANITRFFDGAVGAGAFAP 1182


>gi|149236109|ref|XP_001523932.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452308|gb|EDK46564.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
          Length = 975

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +     +    +   T+T R         +   K  +G +++    +P     + AD   
Sbjct: 581 HLDMGIILPRLASMGTITRRATENTWLTASNAKKNKIGSELKTLIEAPKGYCFVGADVDS 640

Query: 753 IELRILAHI----------AKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800
            EL I + +          + +  +    E S   D+H   A+ I G+         R  
Sbjct: 641 EELWIASLVGDSIFGLHGGSALGWMTLEGEKSQKTDLHSKTAS-ILGI--------SRND 691

Query: 801 AKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTK----- 850
           AK  N+  IYG        L  Q    +   EA D  K+ +    G     +  K     
Sbjct: 692 AKVFNYGRIYGAGLKFATTLLKQFNPSLSEKEAEDTAKKLYASTKGKIRGSKSVKSNKFY 751

Query: 851 ------------NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
                         + Q     T        + +     + +N    + +N  IQ S  D
Sbjct: 752 SGGSESVMFNALEAIAQQPKPRTPVLGAQITEALTKRNLN-KNTYMTSRVNWTIQSSGVD 810

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
                ++S+   +E + +  ++ + +HDEL + V EE+   AS ++ 
Sbjct: 811 YLHLLIVSMDYLIERYGIDARLAITVHDELRYLVKEEDKYMASLLLQ 857


>gi|57099749|ref|XP_533271.1| PREDICTED: similar to flap structure-specific endonuclease 1
           isoform 1 [Canis familiaris]
          Length = 380

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLNRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           L+ F               + R++ +              +  + +     E E      
Sbjct: 306 LVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSAK 365

Query: 326 IKT 328
            K 
Sbjct: 366 KKA 368


>gi|325091155|gb|EGC44465.1| DNA polymerase gamma [Ajellomyces capsulatus H88]
          Length = 1146

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 61/388 (15%), Positives = 113/388 (29%), Gaps = 67/388 (17%)

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +  +   L   +    G     SSP   G +  F   K  S         +  A     I
Sbjct: 574 LRDDREHLYFKLPHKDGPDARCSSPLAKGYLQYFEGGKLSSQFALAKEALEMNASCSYWI 633

Query: 661 NCGDNPIIKNILEWRQLSKIKST--------YADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +  D  + + ++    + ++++             LP  I   T       +   T +  
Sbjct: 634 SARDRIMSQMVVYHNDIERLQNKSSSNSTLKQGYILPQIIPMGTITRRAVENTWLTAS-- 691

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                 N +   + ++L   +R    +PP    + AD    EL I A +           
Sbjct: 692 ------NAKANRVGSELKAMVR----APPGYVFVGADVDSEELWI-ASLVGDAQFQIHGG 740

Query: 773 N-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFR 816
           N               D+H   A+ I G+         R  AK  N+  IYG        
Sbjct: 741 NAIGFMTLEGTKSAGTDLHSKTAS-ILGI--------SRNDAKVFNYGRIYGAGLKFAAT 791

Query: 817 LATQLR--IPRSEAADYIKRYFHRFPGIHE-----------------YIEKTKNFVRQNG 857
           L  Q    +   E      + +    G                    ++        +  
Sbjct: 792 LLRQFNPSMSEQETKRVAAKLYKETKGTRTNRKILSDNPFWRGGTESFVFNKLEEFAEQE 851

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
              T        + +   +   +     + IN  IQ S  D     +IS+   +    L 
Sbjct: 852 RPRTPVLGAGITEALM-RRFINKGSFMTSRINWAIQSSGVDYLHLLIISMDFLIRRFNLD 910

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIV 945
            ++ + +HDE+ + V E +   A+  + 
Sbjct: 911 ARLAITVHDEIRYLVKEHDKYRAAMALQ 938


>gi|134081963|emb|CAK97229.1| unnamed protein product [Aspergillus niger]
          Length = 1108

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 91/298 (30%), Gaps = 48/298 (16%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           + R   +        T+T R         +      +G +++    +PP    + AD   
Sbjct: 635 DHRLGFILPQIIPMGTITRRAVENTWLTASNAKGNRVGSELKAMIKAPPGYSFVGADVDS 694

Query: 753 IELRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I A +           N               D+H   A +I G+         R 
Sbjct: 695 QELWI-ASLVGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-QILGI--------SRN 744

Query: 800 HAKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHE---------- 844
            AK  N+  IYG      AT LR     +   +  +   + +    G             
Sbjct: 745 DAKVFNYGRIYGAGVKFAATLLRQFNPSMSERQTQEVATKLYKETKGTRTTRRILCEGPF 804

Query: 845 -------YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
                  ++        +     T        + +   +   +     + IN  IQ S  
Sbjct: 805 WRGGTESFVFNKLEEFAEQERPRTPTLGAGITEALM-RRFINKGSFMTSRINWAIQSSGV 863

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI--TTASQIIVHSMEKACL 953
           D     ++++   +    +A ++ + +HDE+ + V +E+      +  + +   +A  
Sbjct: 864 DYLHLLIVAMDYLIRRFNIAARLAITVHDEIRYLVKDEDKYRAALALQVANVWTRAMF 921


>gi|330797354|ref|XP_003286726.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
 gi|325083324|gb|EGC36780.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
          Length = 383

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 101/314 (32%), Gaps = 58/314 (18%)

Query: 5   NHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  +D S+ +Y+   A             G   + + G   M ++ ++   K     +
Sbjct: 28  GRIIAIDASTSLYQFLIAMNADVSSALTNQLGETTSHLQG---MFYRTIKLISKGIKPIY 84

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLP-----------------------QLPL 97
              +FD    T ++      +A R +  + L                         Q   
Sbjct: 85  ---VFDGKPPTLKSGELAKRQAKRKEATDSLKEATEVGTSEDVQKFAKRTISVSRKQNEE 141

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTY--IAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
                   G+P ++    EA+   A       A   G      S D D + L S      
Sbjct: 142 CIKLLTLMGVPVVKAPC-EAEAQCAEIVKSGKAWATG------SEDMDSLTLGSTVLLRR 194

Query: 156 DTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
               E K       ++  V++  G+  E+ + L  L G   D    I GIG K A  L+Q
Sbjct: 195 LFFSEAKKMPILEFELPSVLEGLGLTYEEFIDLGILLG--CDYCDSIKGIGPKRAFELIQ 252

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           ++  LE I+ +    K K        Y E   L +       DV     L     +D + 
Sbjct: 253 KHKTLEEIIKHLD--KSKYPIPEFFPYQEVRELFK-----HPDVIPGDQLPAFQWKDPDV 305

Query: 270 PRLISFL-KALEFT 282
             L  FL K + F+
Sbjct: 306 EGLNEFLVKEMGFS 319


>gi|74226616|dbj|BAE21732.1| unnamed protein product [Mus musculus]
          Length = 1217

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 124/431 (28%), Gaps = 122/431 (28%)

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             G  +N+ SP       F K   P             A     +      I K I  WR 
Sbjct: 734  DGNNYNVGSP-------FAKDFLPKMEDGTLQAGPGGASGPRAL-----EINKMISFWRN 781

Query: 677  LSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTGRLASLEPNLQN 722
              K I S     LP     R    H  +               A T+T R         +
Sbjct: 782  AHKRISSQMVVWLPRSALPRVVTRHPSFDEEGHYGAILPQVVTAGTITRRAVEPTWLTAS 841

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA-----HIAKITPLYQVF------ 771
                  +G +++    +PP   L+ AD    EL I A     H A +      F      
Sbjct: 842  NARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFAGMHGCT-AFGWMTLQ 900

Query: 772  ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--I 823
                   D+H   AA +            R HAK  N+  IYG       RL  Q    +
Sbjct: 901  GRKSRGTDLHSKTAATV---------GISREHAKIFNYGRIYGAGQSFAERLLMQFNHRL 951

Query: 824  PRSEAAD----------------------------------------------YIKRYFH 837
             R EAA+                                               I+R   
Sbjct: 952  TRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWVSLQDLRMIQREAS 1011

Query: 838  RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI--------------RNIN 883
            R     ++ E         G    +F +       ++P++ +              +   
Sbjct: 1012 RKSRWKKW-EVASERAWTGGTESEMFNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEF 1070

Query: 884  ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS-- 941
              + +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V EE+   A+  
Sbjct: 1071 ITSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALA 1130

Query: 942  ----QIIVHSM 948
                 ++   M
Sbjct: 1131 LQITNLLTRCM 1141


>gi|145614196|ref|XP_364068.2| hypothetical protein MGG_08913 [Magnaporthe oryzae 70-15]
 gi|145021143|gb|EDK05272.1| hypothetical protein MGG_08913 [Magnaporthe oryzae 70-15]
          Length = 1103

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 87/287 (30%), Gaps = 48/287 (16%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           ++  +        T+T R         +   K  +G +++    +PP    + AD    E
Sbjct: 625 KSGFILPQIIPMGTITRRAVENTWLTASNAKKNRVGSELKAMVKAPPGYCFVGADVDSEE 684

Query: 755 LRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
           L I A +           N               D+H   A+ I G+         R  A
Sbjct: 685 LWI-ASVVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT--------RNDA 734

Query: 802 KTINFSIIYGISPF-------------------RLATQLRIPRSEAADYIKRYFHRFPGI 842
           K  N+  IYG                         A++L      A    K  + R P  
Sbjct: 735 KVFNYGRIYGAGLKFAGQLLRQFNPNLSEQETVETASKLYAATKGAKTNRKALYKR-PFW 793

Query: 843 H----EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
                 ++        +     T        + + S     +     + IN  IQ S  D
Sbjct: 794 RGGTESFVFNKLEEFAEQERPRTPVLGAGITEALMSR-FMSKGGYLTSRINWAIQSSGVD 852

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
                ++S+   +    +  ++ + +HDE+ + V + +   A+  + 
Sbjct: 853 YLHLLIVSMDYLMRRFNIDARLAITVHDEIRYLVKDHDKYRAAMALQ 899


>gi|312218970|emb|CBX98915.1| similar to DNA polymerase gamma [Leptosphaeria maculans]
          Length = 1168

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 91/294 (30%), Gaps = 60/294 (20%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
           K+   +        T+T R         +   K  +G +++    +P     + AD    
Sbjct: 663 KKVGFILPQIIPMGTITRRSVENTWLTASNAKKNRVGSELKSMVRAPEGYCFVGADVDSQ 722

Query: 754 ELRILAHI------------AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
           EL I + I                 L        D+H   A  I G+         R  A
Sbjct: 723 ELWIASLIGDATFKLHGGNAVGFMTLEGTKAAGTDLHSRTAG-ILGI--------SRNAA 773

Query: 802 KTINFSIIYGIS---PFRLATQLRIP---------------RSEAADYIKRYFHRFPGIH 843
           K  N+  IYG        L  Q                    ++    +++  H  P   
Sbjct: 774 KVFNYGRIYGAGLKFAATLLRQFNPTLTDEQTLKTANDLYQNTKGKKTVRKQLHERPFWR 833

Query: 844 ----EYI-EKTKNFVRQN-------GYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891
                ++  K ++F  Q        G   T   +R +           R     + IN  
Sbjct: 834 GGTESFVFNKLEDFAEQERPRTPVLGAAITEALQRRYL---------TRGGFMTSRINWA 884

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           IQ S  D     ++S+      + L  ++ + +HDE+ + V +++   A+  + 
Sbjct: 885 IQSSGVDYLHLLIVSMDFLTRRYNLDARLAITVHDEIRYLVADKDKYRAAMALQ 938


>gi|189208179|ref|XP_001940423.1| DNA polymerase gamma [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187976516|gb|EDU43142.1| DNA polymerase gamma [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1526

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 88/285 (30%), Gaps = 42/285 (14%)

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            K+   +        T+T R         +   K  +G +++    +P     + AD    
Sbjct: 1033 KKVGFILPQIIPMGTITRRSVENTWLTASNAKKNRVGSELKSMVRAPKGYCFVGADVDSQ 1092

Query: 754  ELRILAHI------------AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            EL I + I                 L        D+H   AA I G+         R  A
Sbjct: 1093 ELWIASLIGDATFQLHGGNAVGFMTLEGTKAAGTDLHSRTAA-ILGI--------SRNDA 1143

Query: 802  KTINFSIIYGIS---PFRLATQLRIPRSEAA--DYIKRYFHRFPGIHEYIEKTKNFVRQN 856
            K  N+  IYG        L  Q     ++A      +  +    G+    ++        
Sbjct: 1144 KVFNYGRIYGAGLKFASTLLRQFNPSLTDAQTTKTAEDLYKNTKGMKTNRKQLHERSFWR 1203

Query: 857  GYVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADIT 900
            G  E+             R     + +        +   +     + IN  IQ S  D  
Sbjct: 1204 GGTESFVFNKLEDFAEQERPRTPVLGAAITEALQRRYLSKGGFMTSRINWAIQSSGVDYL 1263

Query: 901  RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
               ++S+        L  ++ + +HDE+ + V EE+   A+  + 
Sbjct: 1264 HLLIVSMDYLTRRFNLDCRLSITVHDEIRYLVKEEDKYKAAMALQ 1308


>gi|150865746|ref|XP_001385083.2| mitochondrial DNA polymerase catalytic subunit [Scheffersomyces
           stipitis CBS 6054]
 gi|149387002|gb|ABN67054.2| mitochondrial DNA polymerase catalytic subunit [Scheffersomyces
           stipitis CBS 6054]
          Length = 1061

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 101/282 (35%), Gaps = 41/282 (14%)

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
              +        T+T R         +   K  +G +++    +PP    + AD    EL
Sbjct: 642 MGIILPRLCTMGTITRRATENTWLTASNAKKNRIGSELKSLIEAPPGYCFVGADVDSEEL 701

Query: 756 RILAHIA----KITPLYQVFENSL--------DIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            I + +     KI     +   +L        D+H   A EI G+         R  AK 
Sbjct: 702 WIASLVGDSMFKIHGGTALGWMNLEGDKHEKTDLHSKTA-EILGI--------SRGDAKV 752

Query: 804 INFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858
            N+  IYG       RL  Q    +  +EA +  K  + R  G     +  K  +   G 
Sbjct: 753 FNYGRIYGAGVKFATRLLKQFNSKLSEAEAEETAKLLYARTKGEMSSSKYLKRRLYHGGT 812

Query: 859 VETIFGRRIHYDEINSPKSSI---------------RNINERAAINAPIQGSAADITRRA 903
              +F          +P++ +               +N    + IN  IQ S  D     
Sbjct: 813 ESVMFNALESIAYQKNPRTPVLGAAITSALTIDNLNKNSYLTSRINWAIQSSGVDYLHLL 872

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           ++S+   ++ +++  ++ + +HDE+ + V E +   A+ ++ 
Sbjct: 873 VVSMEYLIDKYQIDARLSITVHDEIRYLVKESDKYKAALLLQ 914


>gi|55733906|gb|AAV59413.1| putative flap endonuclease 1 [Oryza sativa Japonica Group]
          Length = 380

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 99/283 (34%), Gaps = 58/283 (20%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV-------TFRNEIYPDY 80
               G   + + G  N   +LL+   K     +   +FD             R+++Y   
Sbjct: 55  TNEAGEVTSHLQGMFNRTIRLLEAGIK---PVY---VFDGKPPDLKKQELAKRHDMY--- 105

Query: 81  KANRPKIPEMLLPQ-----------------------LPLVRLATQAFGIPAIEIQGFE- 116
            + R    + L                              +   +  G+P +E      
Sbjct: 106 -SKREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAE 164

Query: 117 ---ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
              A   I    Y    E          + L  L+ P++     +   + ++  V+++  
Sbjct: 165 AECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVM---EFEVAKVLEELE 221

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           +  ++ + L  L+G   D    I GIG +TA  L++++G++E+IL N ++ + +   +  
Sbjct: 222 LTMDQFIDLCILSG--CDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDW- 278

Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
             Y E  RL ++         +T+ +  L     +   L+ FL
Sbjct: 279 -PYQEARRLFKE-------PNVTLDIPELKWNAPDEEGLVEFL 313


>gi|331035472|gb|AEC53029.1| RNaseH ribonuclease [Synechococcus phage S-CRM01]
          Length = 280

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 92/260 (35%), Gaps = 38/260 (14%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
              +L ++    R+E       + +D     +R E++P YK NR +  E        V  
Sbjct: 33  VIRVLGRIHNKYRREYGE--MVLCYDDKEY-WRKEVFPLYKKNRKQEREESNIDWDHVFS 89

Query: 101 ATQA--------FGIPAIEIQGFEADDIIATYTYIAEKEGFA--VTIISTDKDLMQLVS- 149
                       F    I+ QG EADDIIAT             V I+S DKD +QL   
Sbjct: 90  VLNKIRDEIRINFPYKVIQAQGAEADDIIATLCMHNSHREIPDRVLILSADKDFIQLHKY 149

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI----------PGI 199
                YD ++   I      +++   P   +    + GD  D IP I             
Sbjct: 150 DFVKQYDPIRNRWI-----KEEY---PIFYLQEHIIRGDRSDGIPNILTCDDAIVNHKPQ 201

Query: 200 GYKTAALLLQEYGNLE-NILINASRIKQKKRRENIL--EYAETARLSRKLVMLRTDV-PI 255
              +A   +Q    ++     N  RI+  KR   ++  +Y   A   R L +    V P 
Sbjct: 202 KKMSAEK-IQTLATMDPKNFNNFVRIRNWKRNAQLIDFQYIPQAIRDRILTIYHKAVIPT 260

Query: 256 TIPLEHLILEDCNGPRLISF 275
            I LE+    +     L  F
Sbjct: 261 GISLEYFSQHNI-TDILSEF 279


>gi|68478473|ref|XP_716738.1| hypothetical protein CaO19.3431 [Candida albicans SC5314]
 gi|68478594|ref|XP_716679.1| hypothetical protein CaO19.10935 [Candida albicans SC5314]
 gi|46438355|gb|EAK97687.1| hypothetical protein CaO19.10935 [Candida albicans SC5314]
 gi|46438419|gb|EAK97750.1| hypothetical protein CaO19.3431 [Candida albicans SC5314]
          Length = 1228

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 98/288 (34%), Gaps = 47/288 (16%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +     +    +   T+T R         +   K  +G +++    +P     + AD   
Sbjct: 711 HSSMGIIIPNLATMGTITRRATENTWLTASNAKKNRIGSELKSLVEAPKGYCFVGADVDS 770

Query: 753 IELRILAHIAKITPLYQVFENSL-------------DIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I A +   + L      +L             D+H   A+ I G+         R 
Sbjct: 771 EELWI-ASLVGDSMLQIHGGTALGWMTLEGEKSQKTDLHSKTAS-ILGI--------SRN 820

Query: 800 HAKTINFSIIYGISPFRLATQL------RIPRSEAADYIKRYFHR--------------- 838
            AK  N+  IYG    + AT+L       I   EA    ++ +                 
Sbjct: 821 DAKVFNYGRIYGAGV-KFATRLLKQFNANITDEEADKVARQLYDSTKGRTAVSKYLPSRI 879

Query: 839 -FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
            + G    +      + Q    +T        D +N    +  N    + +N  IQ S  
Sbjct: 880 YYGGTESIMFNALEAIAQQEEPKTPVLGASITDALNVKNLNT-NQYMTSRVNWTIQSSGV 938

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           D     +IS+   +E + +  ++ + +HDEL + V E +   A+ ++ 
Sbjct: 939 DYLHLLIISMEYLIEKYGIDARLAITVHDELRYLVKETDKYKAALLLQ 986


>gi|164428985|ref|XP_957747.2| DNA polymerase gamma [Neurospora crassa OR74A]
 gi|166214919|sp|Q9Y767|DPOG_NEUCR RecName: Full=DNA polymerase gamma, mitochondrial; AltName:
           Full=Mitochondrial DNA polymerase catalytic subunit;
           Flags: Precursor
 gi|157072364|gb|EAA28511.2| DNA polymerase gamma [Neurospora crassa OR74A]
          Length = 1456

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 88/298 (29%), Gaps = 50/298 (16%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                V        T+T R         +   K  +G +++    +PP    + AD    
Sbjct: 685 PIGGFVLPQVIPMGTITRRAVERTWLTASNAKKNRVGSELKAMVRAPPGYVFVGADVDSE 744

Query: 754 ELRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           EL I A +           N               D+H   A+ I G+         R  
Sbjct: 745 ELWI-ASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTAS-ILGIT--------RND 794

Query: 801 AKTINFSIIYGISPF-------------------RLATQLRIPRSEAADYIKRYFHRFPG 841
           AK  N+  IYG                        +AT+L      A    K  + R P 
Sbjct: 795 AKVFNYGRIYGAGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAKTNRKSLYKR-PF 853

Query: 842 IH----EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
                  ++        +     T        + + S     +     + IN  IQ S  
Sbjct: 854 WRGGTESFVFNMLEEFAEQERPRTPVLGAGITEALMSR-WVSKGGFLTSRINWAIQSSGV 912

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDEL--VFEVPEEEITTASQIIVHSMEKACL 953
           D     +I++        LA ++ + +HDE+  + E P++     +  I +   +   
Sbjct: 913 DYLHLLIIAMDYLTRRFNLACRLAITVHDEIRYLAEEPDKYRVAMALQIANLWTRVMF 970


>gi|312215236|emb|CBX95189.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans]
          Length = 1312

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 117/343 (34%), Gaps = 45/343 (13%)

Query: 59   SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
            +  +V FD      R +     K +R    E+    +   +     FG+P I     EA+
Sbjct: 941  TAVSVDFDKELKQLRAQQ----KKDRRDADEVTQTMITECQHLLTLFGLPYITAP-MEAE 995

Query: 119  DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWG 173
               A    +   +G    I++ D D    +   T +Y  +       E      +  ++ 
Sbjct: 996  AQCAELVSLGLVDG----IVTDDSDTF--LFGGTRVYKNMFNAAKFVECYLASDLASEFS 1049

Query: 174  IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE------------NILINA 221
            +  +K++ +  L G   D  PGIPGIG  TA  +L E+ +LE            +I   A
Sbjct: 1050 LTRDKLIAIAQLLG--SDYTPGIPGIGPVTALEILSEFPDLEQFKQWWTGVQDGSIPKAA 1107

Query: 222  SRIKQ--KKRRENILEYAETARL-----SRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274
                   K+ R+N    A    L       ++        +    +       +   L +
Sbjct: 1108 DATSPFRKRFRKN---QATKLFLPPTFPDPRVADAYLHPEVDSDPQPFEWGVPDLAALRA 1164

Query: 275  FLKALEFTKLIN--RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS--- 329
            FL++           V      D    E      N T  +G A E+ +   T  K +   
Sbjct: 1165 FLQSQIGWSWERTDEVLVPVIRDMNRREKEGTQANITRVRGQAAESAVGGRTRGKGASGK 1224

Query: 330  QFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
            +  +  ++ ++    ++      E  ++ ++  +++     + 
Sbjct: 1225 RLGAALERLAEREGARSAVDGRGESEEQEAEKGVDDIETATVD 1267


>gi|225561715|gb|EEH09995.1| DNA polymerase gamma [Ajellomyces capsulatus G186AR]
          Length = 1146

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 61/388 (15%), Positives = 112/388 (28%), Gaps = 67/388 (17%)

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +  +   L   +    G     SSP   G +  F   K  S         +  A     I
Sbjct: 574 LRDDREHLYFKLPHKDGPDARCSSPLAKGYLQYFEGGKLSSQFALAKEALEMNASCSYWI 633

Query: 661 NCGDNPIIKNILEWRQLSKIKST--------YADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +  D  + + ++    + ++++             LP  I   T       +   T +  
Sbjct: 634 SARDRIMSQMVVYHNDIERLQNKSSSNSTLKQGYILPQIIPMGTITRRAVENTWLTAS-- 691

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                 N +   + ++L   +R    +PP    + AD    EL I A +           
Sbjct: 692 ------NAKANRVGSELKAMVR----APPGYVFVGADVDSEELWI-ASLVGDAQFQIHGG 740

Query: 773 N-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFR 816
           N               D+H   A  I G+         R  AK  N+  IYG        
Sbjct: 741 NAIGFMTLEGTKSAGTDLHSKTA-NILGI--------SRNDAKVFNYGRIYGAGLKFAAT 791

Query: 817 LATQLR--IPRSEAADYIKRYFHRFPGIHE-----------------YIEKTKNFVRQNG 857
           L  Q    +   E      + +    G                    ++        +  
Sbjct: 792 LLRQFNPSMSEQETKRVAAKLYEETKGTRTNRKILSDNPFWRGGTESFVFNKLEEFAEQE 851

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
              T        + +   +   +     + IN  IQ S  D     +IS+   +    L 
Sbjct: 852 RPRTPVLGAGITEALM-RRFINKGSFMTSRINWAIQSSGVDYLHLLIISMDFLIRRFNLD 910

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIV 945
            ++ + +HDE+ + V E +   A+  + 
Sbjct: 911 ARLAITVHDEIRYLVKEHDKYRAAMALQ 938


>gi|33321977|gb|AAQ06707.1|AF496050_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 80

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
           +SPKQLG ILF KL  P   KTKTG   +T+ ++       +P + +ILE+RQ+SKI+ST
Sbjct: 1   NSPKQLGVILFEKLGLPVIKKTKTGY--STSVEVLNQLKEQSPXVSDILEYRQISKIQST 58

Query: 684 YADSLPNHINKRTQRVHTFYSL 705
           Y   L + I++R  R+HT Y  
Sbjct: 59  YVKGLLDVIDERDGRIHTRYLQ 80


>gi|317374918|sp|C1BM18|FEN1_OSMMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|225708450|gb|ACO10071.1| Flap endonuclease 1-B [Osmerus mordax]
          Length = 380

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 89/278 (32%), Gaps = 50/278 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  DG   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEDGETTSHLMG---MFYRTIRMLENGIKPVY---VFDGKPPQLKSGELEKRGERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            ++L                              +      G+P +E    EA+   A  
Sbjct: 108 EKLLAQAQEAGEQENIDKFSKRLVKVTRQHNDECKKLLTLMGVPYVEAPC-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   +     + T  E      ++     +++  G+  E+
Sbjct: 167 VK----AGKVFATATEDMDGLTFGTGVLLRHLTASEAKKLPIQEFHFSRILQDIGLSHEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  L G   D    I GIG K A  L++++G++E IL N    K     + + + A 
Sbjct: 223 FIDLCILLG--CDYCGTIKGIGPKRAMDLIRQHGSIEEILDNIDLSKHPVPEDWLYKEAR 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
              L+  +V              L   + +   L+ F+
Sbjct: 281 GLFLTPDVV--------DCSCLELKWSEPDEEGLVQFM 310


>gi|115387355|ref|XP_001211183.1| DNA polymerase gamma [Aspergillus terreus NIH2624]
 gi|114195267|gb|EAU36967.1| DNA polymerase gamma [Aspergillus terreus NIH2624]
          Length = 1131

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 88/295 (29%), Gaps = 46/295 (15%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           R   +        T+T R         +   +  +G +++    +PP    + AD    E
Sbjct: 658 RIGFILPQIIPMGTITRRAVENTWLTASNAKENRVGSELKAMIKAPPGYVFVGADVDSQE 717

Query: 755 LRILAHIA------------KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           L I + I                 L        D+H   A  I G+         R  AK
Sbjct: 718 LWIASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTA-HILGI--------SRNDAK 768

Query: 803 TINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHE------------- 844
             N+  IYG      AT LR     +   E  +     +    G                
Sbjct: 769 VFNYGRIYGAGVKFAATLLRQFNPSMTERETQEVASNLYKETKGTRTTRRILSEGPFWRG 828

Query: 845 ----YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
               ++        +     T        + +   +   +     + IN  IQ S  D  
Sbjct: 829 GTESFVFNKLEEFAEQERPRTPTLGAGITEALM-RRFINKGSFMTSRINWAIQSSGVDYL 887

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI--TTASQIIVHSMEKACL 953
              ++++   +    +  ++ + +HDE+ + V +E+      +  + +   +A  
Sbjct: 888 HLLIVAMDYLIRRFNIQARLAITVHDEIRYLVKDEDKYRAALALQVANVWTRAMF 942


>gi|190407627|gb|EDV10894.1| mitochondrial DNA polymerase catalytic subunit [Saccharomyces
           cerevisiae RM11-1a]
          Length = 1254

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 44/280 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 643 IIPKIVPMGTITRRAVENTWLTASNAKANRIGSELKTQVKAPPGYCFVGADVDSEELWIA 702

Query: 759 AHI----------AKITPLYQVF--ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           + +            I  +          D+H   A +I G          R  AK  N+
Sbjct: 703 SLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA-QILGC--------SRNEAKIFNY 753

Query: 807 SIIYGISPFRLATQLR---------IPRSEAADYIKRYFHRFPGIHEYIE---------- 847
             IYG      +  L+           +  A    +    +      + +          
Sbjct: 754 GRIYGAGAKFASQLLKRFNPSLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESIL 813

Query: 848 --KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             K ++   Q      + G  I Y  +   K+   N    + IN  IQ S  D       
Sbjct: 814 FNKLESIAEQETPKTPVLGCGITYSLM--KKNLRANSFLPSRINWAIQSSGVDYLHLLCC 871

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           S+   ++ + L  ++ + IHDE+ F V E++   A+  + 
Sbjct: 872 SMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQ 911


>gi|151945409|gb|EDN63652.1| mitochondrial DNA polymerase catalytic subunit [Saccharomyces
           cerevisiae YJM789]
 gi|207340866|gb|EDZ69085.1| YOR330Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1280

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 44/280 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 669 IIPKIVPMGTITRRAVENTWLTASNAKANRIGSELKTQVKAPPGYCFVGADVDSEELWIA 728

Query: 759 AHI----------AKITPLYQVF--ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           + +            I  +          D+H   A +I G          R  AK  N+
Sbjct: 729 SLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA-QILGC--------SRNEAKIFNY 779

Query: 807 SIIYGISPFRLATQLR---------IPRSEAADYIKRYFHRFPGIHEYIE---------- 847
             IYG      +  L+           +  A    +    +      + +          
Sbjct: 780 GRIYGAGAKFASQLLKRFNPSLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESIL 839

Query: 848 --KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             K ++   Q      + G  I Y  +   K+   N    + IN  IQ S  D       
Sbjct: 840 FNKLESIAEQETPKTPVLGCGITYSLM--KKNLRANSFLPSRINWAIQSSGVDYLHLLCC 897

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           S+   ++ + L  ++ + IHDE+ F V E++   A+  + 
Sbjct: 898 SMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQ 937


>gi|256272554|gb|EEU07533.1| Mip1p [Saccharomyces cerevisiae JAY291]
          Length = 1254

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 44/280 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 643 IIPKIVPMGTITRRAVENTWLTASNAKANRIGSELKTQVKAPPGYCFVGADVDSEELWIA 702

Query: 759 AHI----------AKITPLYQVF--ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           + +            I  +          D+H   A +I G          R  AK  N+
Sbjct: 703 SLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA-QILGC--------SRNEAKIFNY 753

Query: 807 SIIYGISPFRLATQLR---------IPRSEAADYIKRYFHRFPGIHEYIE---------- 847
             IYG      +  L+           +  A    +    +      + +          
Sbjct: 754 GRIYGAGAKFASQLLKRFNPSLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESIL 813

Query: 848 --KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             K ++   Q      + G  I Y  +   K+   N    + IN  IQ S  D       
Sbjct: 814 FNKLESIAEQETPKTPVLGCGITYSLM--KKNLRANSFLPSRINWAIQSSGVDYLHLLCC 871

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           S+   ++ + L  ++ + IHDE+ F V E++   A+  + 
Sbjct: 872 SMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQ 911


>gi|470326|gb|AAA17543.1| mitochondrial DNA polymerase [Saccharomyces cerevisiae]
          Length = 1254

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 44/280 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 643 IIPKIVPMGTITRRAVENTWLTASNAKANRIGSELKTQVKAPPGYCFVGADVDSEELWIA 702

Query: 759 AHI----------AKITPLYQVF--ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           + +            I  +          D+H   A +I G          R  AK  N+
Sbjct: 703 SLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA-QILGC--------SRNEAKIFNY 753

Query: 807 SIIYGISPFRLATQLR---------IPRSEAADYIKRYFHRFPGIHEYIE---------- 847
             IYG      +  L+           +  A    +    +      + +          
Sbjct: 754 GRIYGAGAKFASQLLKRFNPSLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESIL 813

Query: 848 --KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             K ++   Q      + G  I Y  +   K+   N    + IN  IQ S  D       
Sbjct: 814 FNKLESIAEQETPKTPVLGCGITYSLM--KKNLRANSFLPSRINWAIQSSGVDYLHLLCC 871

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           S+   ++ + L  ++ + IHDE+ F V E++   A+  + 
Sbjct: 872 SMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQ 911


>gi|149725210|ref|XP_001502303.1| PREDICTED: flap structure-specific endonuclease 1 [Equus caballus]
          Length = 380

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEV--------LDPETVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATT 291
           L+ F               + R++ +
Sbjct: 306 LVKFMCGEKQFSEERIRSGVKRLSKS 331


>gi|1420721|emb|CAA99652.1| MIP1 [Saccharomyces cerevisiae]
          Length = 1280

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 44/280 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 669 IIPKIVPMGTITRRAVENAWLTASNAKANRIGSELKTQVKAPPGYCFVGADVDSEELWIA 728

Query: 759 AHI----------AKITPLYQVF--ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           + +            I  +          D+H   A +I G          R  AK  N+
Sbjct: 729 SLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA-QILGC--------SRNEAKIFNY 779

Query: 807 SIIYGISPFRLATQLR---------IPRSEAADYIKRYFHRFPGIHEYIE---------- 847
             IYG      +  L+           +  A    +    +      + +          
Sbjct: 780 GRIYGAGAKFASQLLKRFNPSLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESIL 839

Query: 848 --KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             K ++   Q      + G  I Y  +   K+   N    + IN  IQ S  D       
Sbjct: 840 FNKLESIAEQETPKTPVLGCGITYSLM--KKNLRANSFLPSRINWAIQSSGVDYLHLLCC 897

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           S+   ++ + L  ++ + IHDE+ F V E++   A+  + 
Sbjct: 898 SMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQ 937


>gi|83578108|ref|NP_014975.2| Mip1p [Saccharomyces cerevisiae S288c]
 gi|1706509|sp|P15801|DPOG_YEAST RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|1163066|emb|CAA89977.1| MIP1 [Saccharomyces cerevisiae]
 gi|285815200|tpg|DAA11093.1| TPA: Mip1p [Saccharomyces cerevisiae S288c]
          Length = 1254

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 44/280 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 643 IIPKIVPMGTITRRAVENAWLTASNAKANRIGSELKTQVKAPPGYCFVGADVDSEELWIA 702

Query: 759 AHI----------AKITPLYQVF--ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           + +            I  +          D+H   A +I G          R  AK  N+
Sbjct: 703 SLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA-QILGC--------SRNEAKIFNY 753

Query: 807 SIIYGISPFRLATQLR---------IPRSEAADYIKRYFHRFPGIHEYIE---------- 847
             IYG      +  L+           +  A    +    +      + +          
Sbjct: 754 GRIYGAGAKFASQLLKRFNPSLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESIL 813

Query: 848 --KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             K ++   Q      + G  I Y  +   K+   N    + IN  IQ S  D       
Sbjct: 814 FNKLESIAEQETPKTPVLGCGITYSLM--KKNLRANSFLPSRINWAIQSSGVDYLHLLCC 871

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           S+   ++ + L  ++ + IHDE+ F V E++   A+  + 
Sbjct: 872 SMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQ 911


>gi|4455007|gb|AAD21034.1| DNA polymerase gamma [Neurospora crassa]
          Length = 1305

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 88/298 (29%), Gaps = 50/298 (16%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                V        T+T R         +   K  +G +++    +PP    + AD    
Sbjct: 685 PIGGFVLPQVIPMGTITRRAVERTWLTASNAKKNRVGSELKAMVRAPPGYVFVGADVDSE 744

Query: 754 ELRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           EL I A +           N               D+H   A+ I G+         R  
Sbjct: 745 ELWI-ASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTAS-ILGIT--------RND 794

Query: 801 AKTINFSIIYGISPF-------------------RLATQLRIPRSEAADYIKRYFHRFPG 841
           AK  N+  IYG                        +AT+L      A    K  + R P 
Sbjct: 795 AKVFNYGRIYGAGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAKTNRKSLYKR-PF 853

Query: 842 IH----EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
                  ++        +     T        + + S     +     + IN  IQ S  
Sbjct: 854 WRGGTESFVFNMLEEFAEQERPRTPVLGAGITEALMSR-WVSKGGFLTSRINWAIQSSGV 912

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDEL--VFEVPEEEITTASQIIVHSMEKACL 953
           D     +I++        LA ++ + +HDE+  + E P++     +  I +   +   
Sbjct: 913 DYLHLLIIAMDYLTRRFNLACRLAITVHDEIRYLAEEPDKYRVAMALQIANLWTRVMF 970


>gi|294083960|ref|YP_003550717.1| putative phage exonuclease [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663532|gb|ADE38633.1| putative phage exonuclease [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 242

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 18/198 (9%)

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIP 108
           L +  +++           P   FR ++ P YK+NR K  +        +    +     
Sbjct: 46  LDSIMEQTGVKDCVFCLSDPDANFRKDVDPSYKSNRKKTRKP--VGYKALVEWVEQ-SYR 102

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHV 168
             +    EADD +   + + +  G    ++S DKDLM +      LY   K+E++ I   
Sbjct: 103 TFKKSTLEADDCLGILSTMPDNVG-KCIVVSDDKDLMTIPGQ---LYRPTKDERMTITEQ 158

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
                   ++    Q + GD++D   GI GIG K A  +L  + +    +  A  +K   
Sbjct: 159 ------DADRFFLTQTMVGDTVDGYKGIHGIGPKKAEAILGSHPS-WGAVEQAF-LKAGM 210

Query: 229 RRENILEYAETARLSRKL 246
            ++   +  + ARL+R L
Sbjct: 211 TKD---DAIQQARLARIL 225


>gi|157311546|ref|YP_001469589.1| RnaseH [Enterobacteria phage Phi1]
 gi|149380750|gb|ABR24755.1| RNaseH ribonuclease [Enterobacteria phage Phi1]
          Length = 314

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 17/165 (10%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
            + +   +   +++   +   + FD     +R +I P YK NR +  +       ++  A
Sbjct: 60  LDTMRYNMTKFKEQYPIT--VLAFDSSKGYWRRDIAPYYKRNRKEKRDADPRDWEMIFAA 117

Query: 102 T--------QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TT 152
                    +      I++   EADDIIA  T     EG  V I S D D  QL      
Sbjct: 118 INKITEEFKENMPYHVIKVDKVEADDIIAVLTKKFSVEGRQVLINSGDGDYTQLHKYKNV 177

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
             +  V++          K+G  P K + ++ + GD+ D +  + 
Sbjct: 178 KQWAPVQKAWK-----KCKYG-SPYKDLMVKCVKGDAKDGVASVK 216


>gi|242777655|ref|XP_002479078.1| DNA polymerase gamma [Talaromyces stipitatus ATCC 10500]
 gi|218722697|gb|EED22115.1| DNA polymerase gamma [Talaromyces stipitatus ATCC 10500]
          Length = 1129

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 80/273 (29%), Gaps = 46/273 (16%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 666 ILPQVIPMGTITRRAVENTWLTASNAKANRVGSELKAMIKAPPGYVFVGADVDSQELWI- 724

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +           N               D+H   A+ I G+         R  AK  N
Sbjct: 725 ASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDLHSRTAS-ILGI--------SRNDAKVFN 775

Query: 806 FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHE---------------- 844
           +  IYG        L  Q    +   E +    + +    G                   
Sbjct: 776 YGRIYGAGLKFASTLLRQFNPTLTEKETSQIASKLYKETKGTRTTRKILNDGPFWRGGTE 835

Query: 845 -YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            ++        +     T        + +   +   +     + IN  IQ S  D     
Sbjct: 836 SFVFNKLEEFAEQERPRTPALGAGITEALM-RRFINKGSFMTSRINWAIQSSGVDYLHLL 894

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
           + ++   +    +  ++ + +HDE+ + V EE+
Sbjct: 895 ITAMDFLIRRFNIDARLAITVHDEIRYLVKEED 927


>gi|1297340|gb|AAA98977.1| DNA polymerase gamma [Mus musculus]
          Length = 1238

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 123/430 (28%), Gaps = 120/430 (27%)

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             G  +N+ SP       F K   P             A     +      I K I  WR 
Sbjct: 734  DGNNYNVGSP-------FAKDFLPKMEDGTLQAGPGGASGPRAL-----EINKMISFWRN 781

Query: 677  LSK-IKSTYADSLPNHINKR-------------TQRVHTFYSLASTMTGRLASLEPNLQN 722
              K I S     LP     R                +      A T+T R         +
Sbjct: 782  AHKRISSQMVVWLPRSALPRVVTRHPAFDEEGHYGAILPQVVTAGTITRRAVEPTWLTAS 841

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVF------ 771
                  +G +++    +P    L+ AD    EL I      AH+A +      F      
Sbjct: 842  NARPDRVGSELKAMVQAPTGYVLVGADVDSQELWIAAVLGDAHLAGMHGCT-AFGWMTLQ 900

Query: 772  ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--I 823
                   D+H   AA +            R HAK  N+  IYG       RL  Q    +
Sbjct: 901  GRKSRGTDLHSKTAATV---------RIHREHAKIFNYGRIYGAGQSFAERLLMQFNHRL 951

Query: 824  PRSEAADYIKRYFHRFPGIHEYI-----EKTKNFV------RQNGYVETIFGRR-IHYDE 871
             R EAA+  ++ +    G+  Y      E     +       ++G+V     R       
Sbjct: 952  TRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWVSLQDLRMIRREAS 1011

Query: 872  INSPKSSIRNINERA--------------------------------------------- 886
              S        +ERA                                             
Sbjct: 1012 RKSRWKKWEVASERAWTGGTESEMFNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEFI 1071

Query: 887  --AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS--- 941
               +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V EE+   A+   
Sbjct: 1072 TSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALAL 1131

Query: 942  ---QIIVHSM 948
                ++   M
Sbjct: 1132 QITNLLTRCM 1141


>gi|167947000|ref|ZP_02534074.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 116

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 10/107 (9%)

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E  +     P     Y  I +   +  W+ +L+     +F   T ++D   ++ + ++ +
Sbjct: 14  EATEAGPAEPALEVEYETIFSKSALADWLVRLQQAELFAFDTETTSLDYMQAEIVGVSFA 73

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
               +          ++ L+                +L+ LK   E+
Sbjct: 74  VEAGR--------AAYLPLAHRYP--GAPDQLDRDWVLAQLKPLLED 110


>gi|330721714|gb|EGG99712.1| DNA polymerase I [gamma proteobacterium IMCC2047]
          Length = 51

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           +Q+HDELV EV + ++   SQ +   M +     + L VPL V + V  NW + +
Sbjct: 1   MQVHDELVLEVADSDVELVSQGLNQYMSE----TVKLDVPLLVEVGVGENWGQAH 51


>gi|301781710|ref|XP_002926265.1| PREDICTED: flap endonuclease 1-like [Ailuropoda melanoleuca]
 gi|281345366|gb|EFB20950.1| hypothetical protein PANDA_015901 [Ailuropoda melanoleuca]
          Length = 380

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 93/299 (31%), Gaps = 56/299 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEEGETTSHLMG---MFYRTIRMMENGIKPVY---VFDGKPPQLKSGELAKRGERRAEA 107

Query: 88  PEMLLPQL-----------------------PLVRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      G+P ++    EA+   A  
Sbjct: 108 EKQLQQAQAAGVEEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPS-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   SP    + T  E      ++  +  ++++ G+  E+
Sbjct: 167 VK----AGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            V L  L G   D    I GIG K A  L+Q++ ++E I+      K       + + A+
Sbjct: 223 FVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQ 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
              L  ++        +      L   + N   L+ F               + R++ +
Sbjct: 281 QLFLEPEV--------LDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKS 331


>gi|75057714|sp|Q58DH8|FEN1_BOVIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|61553325|gb|AAX46387.1| flap structure-specific endonuclease 1 [Bos taurus]
 gi|61553832|gb|AAX46466.1| flap structure-specific endonuclease 1 [Bos taurus]
 gi|61554710|gb|AAX46602.1| flap structure-specific endonuclease 1 [Bos taurus]
 gi|296471658|gb|DAA13773.1| flap endonuclease 1 [Bos taurus]
          Length = 380

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATT 291
           LI F               + R++ +
Sbjct: 306 LIKFMCGEKQFSEERIRSGVRRLSKS 331


>gi|71412302|ref|XP_808342.1| mitochondrial DNA polymerase I protein D [Trypanosoma cruzi strain
           CL Brener]
 gi|70872528|gb|EAN86491.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 230

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 69/212 (32%), Gaps = 36/212 (16%)

Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY---------- 845
           ++R+ AK  +F   YG     ++    + + +  + I++    + G+  +          
Sbjct: 6   KLRQQAKIFSFQRQYGAGVKMISQSTGLTQDQVRNLIEKERETYHGVDAFNSMVALSANN 65

Query: 846 IEKTKNFVRQN-----------------GYVETIFGRRIHYDEINSPKSSIRNINERAAI 888
            + +     +N                  YV T            S  +   N +     
Sbjct: 66  FDASIQDGSRNVRGHQFFKGMFPVITGSRYVFTESDVPEGIMREKSLSAKSTNFSPTHLK 125

Query: 889 NAPIQGSAADITRRAMISVHKS-LEDHKLATKMLL--QIHDELVFEVPEEEITTASQIIV 945
           N P+QG A +I +  +  + +  L ++      +L   +HD +  +   +     +  + 
Sbjct: 126 NYPVQGFAGEIVQIMLGMLWRHFLRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVAYEVE 185

Query: 946 HSMEKA------CLPKINLRVPLKVNIKVSNN 971
             M           P++N+ V    ++    N
Sbjct: 186 TIMSNVREVLNRLYPEMNITVDFPCDVVAGEN 217


>gi|50556476|ref|XP_505646.1| YALI0F20042p [Yarrowia lipolytica]
 gi|74632421|sp|Q6C116|FEN1_YARLI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|49651516|emb|CAG78455.1| YALI0F20042p [Yarrowia lipolytica]
          Length = 389

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 28/205 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K      PE    Q    +      GIP +E    EA+   A       + G      S 
Sbjct: 140 KRTVRVTPE----QNDEAKKLLTLMGIPIVEAPC-EAEAQCAKLA----EAGKVYAAASE 190

Query: 141 DKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTG-DSIDNI 193
           D D +   SP    + T  E       +I+   +++   +   + + L  L G D  D I
Sbjct: 191 DMDTLCFGSPVLLRHLTFSEAKKMPISEINFAKILEGLEMTHAQFIDLCILLGCDYADTI 250

Query: 194 PGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
               G+G +TA  L++E+G+LE I+ +  +    K    + E         + V      
Sbjct: 251 ---RGVGPQTALKLMKEHGSLEKIVEHIEKNPSGKL--KVPENWP-----YQEVRALLQA 300

Query: 254 P--ITIPLEHLILEDCNGPRLISFL 276
           P  +      +   + +   L+ FL
Sbjct: 301 PDVLDSSSCDIKWNNPDVEGLVDFL 325


>gi|103487824|ref|YP_617385.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256]
 gi|98977901|gb|ABF54052.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256]
          Length = 205

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 73/215 (33%), Gaps = 24/215 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
             +   + +   G+ +    T  ++    +   + IS     D +  +    F   S + 
Sbjct: 6   HEEDLPEDVLGPGAVAVDTETMGLNPLRDRLCLVQIS-----DGSGDEHLVRFRPGSSYD 60

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
           +                LK    +   LK+ H  ++D   L +  G+         + S 
Sbjct: 61  AP--------------VLKAILADPERLKLFHFARFDIAALQQALGVVTTPVYCTKIASK 106

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + ++ L    +E+ K ++SS           +++A  +   +  +  
Sbjct: 107 LVRTYTDRHGLKELVRELLG---QEVSKQQQSSDWGAAELSEAQRDYAASDVRFLHAMKE 163

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +L  +L  E    + +      +   + +++ G  
Sbjct: 164 ILDARLAREGRTELAQAC-FDFLPTRAALDLAGWP 197


>gi|33620629|ref|NP_891817.1| RnaseH ribonuclease [Enterobacteria phage RB49]
 gi|33438525|gb|AAL87843.2|AF410870_1 RnaseH ribonuclease [Enterobacteria phage RB49]
          Length = 315

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 17/165 (10%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
            + +   +   +++   +   + FD     +R +I P YK NR +  +       ++  A
Sbjct: 61  LDTMRYNMTKFKEQYPIT--VLAFDSSKGYWRRDIAPYYKRNRKEKRDADPRDWEMIFAA 118

Query: 102 T--------QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TT 152
                    +      I++   EADDIIA  T     EG  V I S D D  QL      
Sbjct: 119 INKITEEFKENMPYHVIKVDKVEADDIIAVLTKKFSVEGRQVLINSGDGDYTQLHKYKNV 178

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
             +  V++          K+G  P K + ++ + GD+ D +  + 
Sbjct: 179 KQWAPVQKAWK-----KCKYG-SPYKDLMVKCVKGDAKDGVASVK 217


>gi|328766377|gb|EGF76432.1| hypothetical protein BATDEDRAFT_14887 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1063

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 99/309 (32%), Gaps = 48/309 (15%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +     +        T+T R         +   +  +G +++   +      L+ AD   
Sbjct: 636 DDNIGVILPCTIPMGTITRRAVEPLWMTASNAKENRIGSEVKSMIMPAKGYSLVGADVDS 695

Query: 753 IELRILAHIA------------KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
            EL I +                   L        D+H     +I G+         R  
Sbjct: 696 EELWIASVFGDAQFGQHGSTAIGFMTLQGAKAAGTDLHSTT-GKILGI--------SRNQ 746

Query: 801 AKTINFSIIYGISPF-----RLATQLRIPRSEAADYIKRYFHRFPGIHE---------YI 846
           +K  N+  IYG          +     + R  A    ++ +    G            + 
Sbjct: 747 SKVFNYGRIYGAGIRYAVQLLMQGNSNLTREMAEKKAEQLYKSTKGRRHRSLGRFDNLWH 806

Query: 847 EKTKNFVRQN-GYVETIFGRRIHYDEINSPK----SSIRNINERAAINAPIQGSAADITR 901
             T++ +     ++ T    R        P      ++RN    + IN  +Q S  D   
Sbjct: 807 GGTESMMFNTLDWIATYSDPRTPILGCQIPDALMPQNVRNQFMPSRINWAVQSSGVDYLH 866

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA------SQIIVHSMEKACLPK 955
             +IS++  +    +  + L+ IHDE+ + + +E +  A      S +   +M  + L  
Sbjct: 867 LLLISMNYLMRRLNIDGRFLISIHDEVRYIIKDEHVDLACLALHISNLWTRAMFSSRLGL 926

Query: 956 INLRVPLKV 964
            +L  PL V
Sbjct: 927 HDL--PLNV 933


>gi|71000637|ref|XP_755000.1| Flap endonuclease Rad27 [Aspergillus fumigatus Af293]
 gi|66852637|gb|EAL92962.1| Flap endonuclease Rad27, putative [Aspergillus fumigatus Af293]
          Length = 394

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 140 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 194

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++  G+  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 195 FSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLG--CDYLEPIPKVGPNTALKLIREH 252

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I EY      +R+L +         P      E  +   
Sbjct: 253 GSLEKVVEAIENDPKKKY--VIPEYWPYQD-ARELFLHPDVREADHPECDFKWEAPDVEA 309

Query: 272 LISFL 276
           L+ FL
Sbjct: 310 LVEFL 314


>gi|55584956|gb|AAV53689.1| DNA polymerase [Phage PhiI]
          Length = 129

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM--- 920
            +R     ++  K  +R+    AA+N  +Q + A I +  +I   + L +  L       
Sbjct: 13  WKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGD 70

Query: 921 ---LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              +  +HDE+      EEI            +      N R  L    K+  NW 
Sbjct: 71  FAYMAWVHDEIQVGCRTEEIAQVVIDTAQEAMRWVGDHWNFRCLLDTEGKMGPNWA 126


>gi|327306185|ref|XP_003237784.1| flap endonuclease [Trichophyton rubrum CBS 118892]
 gi|326460782|gb|EGD86235.1| flap endonuclease [Trichophyton rubrum CBS 118892]
          Length = 447

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP ++    EA+   A      +  G A    S D D +   +P    + T
Sbjct: 193 CKRLLELMGIPYLDAP-TEAEAQCAVLARAGKVFGAA----SEDMDTLCFAAPVLLRHLT 247

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++  G+   + V L  L G   D +  IP +G  TA  +++++
Sbjct: 248 FSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLG--CDYLDPIPKVGPNTALKMIRDH 305

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G LE ++       +KK    I +     + +R+L       P   P         +   
Sbjct: 306 GTLEKVVEAIESDPKKKY--VIPDDWPYLQ-ARELFFNPDVRPADAPECDFKWSAPDVEG 362

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 363 LVRFLVE 369


>gi|308806964|ref|XP_003080793.1| FEN-1 (ISS) [Ostreococcus tauri]
 gi|116059254|emb|CAL54961.1| FEN-1 (ISS) [Ostreococcus tauri]
          Length = 428

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 92/290 (31%), Gaps = 51/290 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR--- 84
               G   + + G   ML +  +         +   +FD    T +       K  R   
Sbjct: 94  TNEAGEVTSHLQG---MLMRTSRMLEAGIKPVY---VFDGKPPTMKGGELAKRKDKREEA 147

Query: 85  --------------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
                                +   +   Q   V    Q  GIPA E    EA+   A  
Sbjct: 148 EAALKAAREAGNQEEVEKLSKRTVRVSKEQSMEVMKLAQLLGIPAFEAPC-EAEATCAAM 206

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE------KIDIEHVIKKWGIPPEK 178
                  G    + + D D +   +P         +       + D E  I   G+  ++
Sbjct: 207 CK----AGLVWAVGTEDMDTLTFAAPRVARNLMAPKSAEKPVLEFDYEKTIAGLGLTADQ 262

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  L G   D    I G+G KTA  L++E+G++E IL      K    ++     A 
Sbjct: 263 FIDLCILCG--CDYTDTIRGVGPKTALKLIKEHGSIEKILEAIDTEKYPPPKDWEFAGAR 320

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL-KALEFTKLINR 287
               + ++        + +   +L  +  +   L+ FL K  +F +   R
Sbjct: 321 ELFKNPEV--------MDVSGINLSWKAPDEEGLVEFLVKEKQFQEDRVR 362


>gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
 gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
          Length = 204

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 68/200 (34%), Gaps = 25/200 (12%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           S +    T  ++    +   + +S  D   D   ++     D                  
Sbjct: 19  SVAIDTETLGLNPHRDRLCVVQLSNGDGTADV-VQIPAGHTDAPN--------------- 62

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LKK   +    K+ H  ++D  VL H +G+  +      + S ++ +    H +  
Sbjct: 63  ----LKKLLADPMVTKLFHFARFDIAVLEHAFGVMTQPIYCTKIASKLVRTYTDRHGLKD 118

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           + ++ L     EI K ++SS    +        +A  +   +  L   L   L  E  + 
Sbjct: 119 LVRELLGV---EISKQQQSSDWGAEKLSEAQLTYAASDVLHLHALREKLDTMLARENRMD 175

Query: 568 VYERLDKPMIDVVSQMEITG 587
           + +      +   +++++ G
Sbjct: 176 LAKSC-FEFLPTRARLDLQG 194


>gi|159128014|gb|EDP53129.1| Flap endonuclease, putative [Aspergillus fumigatus A1163]
          Length = 394

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 140 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 194

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++  G+  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 195 FSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLG--CDYLEPIPKVGPNTALKLIREH 252

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I EY      +R+L +         P      E  +   
Sbjct: 253 GSLEKVVEAIENDPKKKY--VIPEYWPYQD-ARELFLHPDVREADHPECDFKWEAPDVEA 309

Query: 272 LISFL 276
           L+ FL
Sbjct: 310 LVEFL 314


>gi|55584960|gb|AAV53692.1| DNA polymerase [Enterobacteria phage W31]
          Length = 129

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM--- 920
            +R     ++  K  +R+    AA+N  +Q + A I +  +I   + L +  L       
Sbjct: 13  WKRRWIKGLDGRKVHVRS--PHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGD 70

Query: 921 ---LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
              +  +HDE+      EEI            +      N R  L    K+  NW 
Sbjct: 71  FAYMAWVHDEIQVGCRTEEIAQVVIDTAQEAMRWVGDHWNFRCLLDTEGKMGPNWA 126


>gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 209

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 77/213 (36%), Gaps = 25/213 (11%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       + +     + +    T  +     +   + +  L+ K             
Sbjct: 8   VSDRDLSDAALGQYLESTAIAVDTETMGLLPQRDRLCLVQLCNLEGK------------- 54

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
             V   + + G+          LKK FE  + +K+ H  ++D   L    GI +      
Sbjct: 55  --VTVIRIAKGQTEAPN-----LKKLFEAANVVKVFHFARFDIATLRANLGIQVSPVFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +  + H +  + Q+     + E+ KS +SS   + +S S+ Q  +A  +   
Sbjct: 108 KIASKLARTYTNRHGLKDVVQE---LEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRY 164

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           +L +   L   L  E+   + +   + +  +VS
Sbjct: 165 LLSVQQKLTEMLKREERWKIAQECFEFLPTIVS 197


>gi|302902991|ref|XP_003048764.1| hypothetical protein NECHADRAFT_105050 [Nectria haematococca mpVI
           77-13-4]
 gi|256729698|gb|EEU43051.1| hypothetical protein NECHADRAFT_105050 [Nectria haematococca mpVI
           77-13-4]
          Length = 1143

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 88/295 (29%), Gaps = 48/295 (16%)

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
              +        T+T R         +   K  +G +++    +P     + AD    EL
Sbjct: 666 DGFILPQIIPMGTITRRAVENTWLTASNAKKNRVGSELKAMVKAPKGYCFVGADVDSQEL 725

Query: 756 RILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            I A +           N               D+H   A+ I G+         R +AK
Sbjct: 726 WI-ASLVGDATFKLHGGNAVGFMTLEGTKSQGTDLHSRTAS-ILGI--------SRNNAK 775

Query: 803 TINFSIIYGISPFRLATQL-----RIPRSEAADYIKRYFHRFPGIHE------------- 844
             N+  IYG      AT L      +   +  +   R +    G                
Sbjct: 776 VFNYGRIYGAGLKFAATLLRQFNPDLSERQTTETASRLYANTKGTKTNRKILYKRPFWRG 835

Query: 845 ----YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900
               ++        +     T        + + S     +     + IN  IQ S  D  
Sbjct: 836 GTESFVFNKLEEFAEQERPRTPALGAGITEALMSR-YVNKGGYLTSRINWAIQSSGVDYL 894

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI--TTASQIIVHSMEKACL 953
              ++ +   +    +  ++ + +HDE+ + V EE+      +  +V+   +A  
Sbjct: 895 HLLIVGMDYLIRRFNIDARVAITVHDEIRYLVKEEDKYRAALALQVVNVWTRAMF 949


>gi|330689547|pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
           Complex With Product 5'-Flap Dna, Sm3+, And K+
 gi|330689551|pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
           Complex With Substrate 5'-Flap Dna, Sm3+, And K+
          Length = 341

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 140 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 194

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 195 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 252

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A    L  ++        +      L   + N   
Sbjct: 253 KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEV--------LDPESVELKWSEPNEEE 304

Query: 272 LISF------LKALEFTKLINRVATT 291
           LI F               + R++ +
Sbjct: 305 LIKFMCGEKQFSEERIRSGVKRLSKS 330


>gi|308374489|ref|ZP_07436247.2| hypothetical protein TMFG_01048 [Mycobacterium tuberculosis
           SUMu006]
 gi|308341782|gb|EFP30633.1| hypothetical protein TMFG_01048 [Mycobacterium tuberculosis
           SUMu006]
          Length = 137

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +  ++   R        AV
Sbjct: 77  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNR----LAV 132

Query: 64  IFD 66
             D
Sbjct: 133 CLD 135


>gi|154283185|ref|XP_001542388.1| DNA polymerase gamma [Ajellomyces capsulatus NAm1]
 gi|150410568|gb|EDN05956.1| DNA polymerase gamma [Ajellomyces capsulatus NAm1]
          Length = 1126

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/388 (15%), Positives = 111/388 (28%), Gaps = 67/388 (17%)

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDI-LFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
           +  +   L   +    G     SSP   G +  F   K  S         +  A     I
Sbjct: 554 LRDDREHLYFKLPHKDGPDARCSSPLAKGYLQYFEGGKLSSQFALAKEALEMNASCSYWI 613

Query: 661 NCGDNPIIKNILEWRQLSKIKST--------YADSLPNHINKRTQRVHTFYSLASTMTGR 712
           +  D  + + ++    + ++++             LP  I   T       +   T +  
Sbjct: 614 SARDRIMSQMVVYHNDIERLQNKSSSNSTLKQGYILPQIIPMGTITRRAVENTWLTAS-- 671

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                 N +   + ++L   +R    +PP    + AD    EL I A +           
Sbjct: 672 ------NAKANRVGSELKAMVR----APPGYVFVGADVDSEELWI-ASLVGDAQFQIHGG 720

Query: 773 N-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFR 816
           N               D+H   A  I G+         R  AK  N+  IYG        
Sbjct: 721 NAIGFMTLEGTKSAGTDLHSKTA-NILGI--------SRNDAKVFNYGRIYGAGLKFAAT 771

Query: 817 LATQLR--IPRSEAADYIKRYFHRFPGIHE-----------------YIEKTKNFVRQNG 857
           L  Q    +   E        +    G                    ++        +  
Sbjct: 772 LLRQFNPSMSEQETKRVAANLYKETKGTRTNRKILSDNPFWRGGTESFVFNKLEEFAEQE 831

Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917
              T        + +   +   +     + IN  IQ S  D     +IS+   +    L 
Sbjct: 832 RPRTPVLGAGITEALM-RRFINKGSFMTSRINWAIQSSGVDYLHLLIISMDFLIRRFNLD 890

Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIV 945
            ++ + +HDE+ + V E +   A+  + 
Sbjct: 891 ARLAITVHDEIRYLVKEHDKYRAAMALQ 918


>gi|322366583|gb|ADW95369.1| Putative DNA/RNA polymorease [Staphylococcus cohnii]
          Length = 366

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 113/303 (37%), Gaps = 35/303 (11%)

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
           D+EQ++     +++     +  +K+   +           T R++T  SL  T T R+ S
Sbjct: 81  DIEQLSVIKENMLEKAKNEQHRTKVSQFFGSLYQTL--DATNRLYTQLSLFGTRTHRITS 138

Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775
              N+Q +P        I++  +    +K+ + D+   E  + A++ +   L +      
Sbjct: 139 KRFNVQGLPK------AIQQIIVPSQFRKVFTIDFKSFEPSVAAYMTQDEQLIEYLNQEE 192

Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS-IIYGISPFRLATQLRIPRSEAADYIKR 834
            ++  +      +N   +    R++ K       ++G        +L    SE       
Sbjct: 193 GLYDAL------LNELSLDKGKRKYVKRAFIGSFLFGGRYSSSNFKLNQEVSEINWL--N 244

Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894
              +F  + +  E+                           +  +RN    + +   +Q 
Sbjct: 245 VMSKFAKVTKLKEQVDKN--------------KMMPMPYGVEHDMRNYQGHSIMPLYVQT 290

Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954
            A+ + +  ++ V+K+ +  ++  K+++ IHD ++ E  +EEI   +Q +   M+     
Sbjct: 291 VASYVFKHILLEVYKA-QCEQMNFKIIMPIHDAIMIECEDEEI---AQSVAQLMKNTANQ 346

Query: 955 KIN 957
             +
Sbjct: 347 LFD 349


>gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
 gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
          Length = 217

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 19/201 (9%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   ++     +    T  +D    +   + +S  D     +  V+ I   L    
Sbjct: 15  HKHDLPDGIDFGPVVAIDTETMGLDPRRDRLCLVQLSAGDGN---AHCVQIIPESLGGRG 71

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY 494
           +                LK        +K+ H  ++D  +L    GI         + + 
Sbjct: 72  ADCPN------------LKALLTRPDVVKLFHFARFDVAILRAALGIECAPVRCTKIAAK 119

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + ++ L     EI K ++SS         +   +A  +   +  LW 
Sbjct: 120 LVRTFTDRHGLKDLCRELLGV---EISKQQQSSDWGAPELTPEQLAYAASDVLHLHALWA 176

Query: 555 LLRPKLIVEKLLHVYERLDKP 575
            L   L  E  L + E   + 
Sbjct: 177 KLEGLLRREGRLELAESCFRF 197


>gi|291334901|gb|ADD94538.1| exonuclease [uncultured phage MedDCM-OCT-S08-C159]
          Length = 244

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 96/267 (35%), Gaps = 32/267 (11%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPV--NAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L+D    +Y +  A  + +R +D      +      N++   L   ++ +   H  V+ 
Sbjct: 3   LLIDADWLVYSSCCACEVDTRWNDWQHTLHSDERDIMNLIESRLDVYKQIAEDKHDVVMC 62

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125
                TFR+EI+P+YK NR    + L  +  +++     +   +      E DD++    
Sbjct: 63  FTSYPTFRHEIFPEYKMNRIGKRKPLALKS-IIKKIKNEYE--SAAYPNLEGDDVLGLLA 119

Query: 126 YIAEKEGFAVTIISTDKDL----MQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
              + +     I+S DKD+     +L+     L+ T K+   D                 
Sbjct: 120 TNGQYKNP--IIVSVDKDMKTIPCKLIQEDEILHITEKKA--DRHWFE------------ 163

Query: 182 LQALTGDSIDNIPGIPGIGYKTAAL-LLQEYGNLENILINASRIKQKKRRENILEYAETA 240
             +L GDS D I G+ G+G  TA+  L       + +         KK           A
Sbjct: 164 -MSLAGDSGDGIAGLKGMGMVTASKTLANTPDTRDALWSKVQETYTKKGY-----SIADA 217

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDC 267
            L+ +L  +  +         + L   
Sbjct: 218 ILNARLTRILREGDYNYSTGEVKLWQP 244


>gi|317374922|sp|Q013G9|FEN1_OSTTA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 389

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 92/290 (31%), Gaps = 51/290 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR--- 84
               G   + + G   ML +  +         +   +FD    T +       K  R   
Sbjct: 55  TNEAGEVTSHLQG---MLMRTSRMLEAGIKPVY---VFDGKPPTMKGGELAKRKDKREEA 108

Query: 85  --------------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
                                +   +   Q   V    Q  GIPA E    EA+   A  
Sbjct: 109 EAALKAAREAGNQEEVEKLSKRTVRVSKEQSMEVMKLAQLLGIPAFEAPC-EAEATCAAM 167

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE------KIDIEHVIKKWGIPPEK 178
                  G    + + D D +   +P         +       + D E  I   G+  ++
Sbjct: 168 CK----AGLVWAVGTEDMDTLTFAAPRVARNLMAPKSAEKPVLEFDYEKTIAGLGLTADQ 223

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  L G   D    I G+G KTA  L++E+G++E IL      K    ++     A 
Sbjct: 224 FIDLCILCG--CDYTDTIRGVGPKTALKLIKEHGSIEKILEAIDTEKYPPPKDWEFAGAR 281

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL-KALEFTKLINR 287
               + ++        + +   +L  +  +   L+ FL K  +F +   R
Sbjct: 282 ELFKNPEV--------MDVSGINLSWKAPDEEGLVEFLVKEKQFQEDRVR 323


>gi|113955257|ref|YP_729699.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311]
 gi|113882608|gb|ABI47566.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311]
          Length = 214

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      W ++     + +       +     +   + I   +               
Sbjct: 13  VFDGDLDADWAERYSHATALAVDTEAMGLIHGRDRLCLVQICDAE--------------- 57

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
                 Q S  +  L +     LK+  E     K+ H  ++D   L    GI +      
Sbjct: 58  -----DQVSCVRIALGQTEAPRLKELMERASIEKVFHFARFDVAALATGLGIRVNPIFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    +D++S++Q+  +A  ++ 
Sbjct: 113 KVGSRLARTYSPRHGLKEVVMELVGV---ELDKQAQSSDWGRVDELSETQLA-YAANDAR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L+  L  E    + ER     I V+S ++ 
Sbjct: 169 YLLPARDRLKEMLQREGRWELAERC-FECIPVMSDLDR 205


>gi|75775305|gb|AAI05256.1| Flap structure-specific endonuclease 1 [Bos taurus]
          Length = 380

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAMDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATT 291
           LI F               + R++ +
Sbjct: 306 LIKFMCGEKQFSEERIRSGVRRLSKS 331


>gi|254581264|ref|XP_002496617.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
 gi|238939509|emb|CAR27684.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
          Length = 1239

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 97/281 (34%), Gaps = 46/281 (16%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +   +  +G +++    +P     + AD    EL I 
Sbjct: 668 ILPGIVPMGTVTRRAVENTWLTASNAKENRIGSELKTQVKAPKGYSFVGADVDSEELWIA 727

Query: 759 AHIA----KITPLYQVF--------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           + ++     I     +             D+H   A +I G N        R  AK  N+
Sbjct: 728 SLVSDSVFNIHGGTAIGWMCLEGTKNEGTDLHTKTA-QILGCN--------RNEAKIFNY 778

Query: 807 SIIYGISPFRLATQL------RIPRSEAADYIKRYFH-------RFPGIHEYI------- 846
             IYG    + ATQL       +P  EA     + +        R     ++        
Sbjct: 779 GRIYGAGV-KFATQLLKKFNPSLPDEEAQGIANQLYENTKGKIQRSKIFKKFWFGGSESI 837

Query: 847 --EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904
              K ++   Q+     + G  I +  +   ++   N    + IN  IQ S  D      
Sbjct: 838 LFNKLESIAEQDEPRTPVLGCGITFSLM--KRNLRTNTFLPSRINWTIQSSGVDYLHLLC 895

Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
            S++  +  + +  ++ + IHDE+ F V +E+   AS  + 
Sbjct: 896 CSMNYLIATYHIKARLCISIHDEIRFLVADEDKYRASMALQ 936


>gi|13506617|gb|AAK01853.1| flap endonuclease-1 [Mus musculus]
          Length = 378

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 139 CKHLLSLMGIPYLDAPS-EAEASCAALAK----AGKVYAAATEDMDCLTFGSPVLMRHLT 193

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  V+++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 194 ASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG--SDYCESIRGIGAKRAVDLIQKH 251

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++V              L   + N   
Sbjct: 252 KSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVV--------DPESVELKWSEPNEEE 303

Query: 272 LISF------LKALEFTKLINRVATT 291
           L+ F               + R++ +
Sbjct: 304 LVKFMCGEKQFSEERIRSGVKRLSKS 329


>gi|259149807|emb|CAY86611.1| Mip1p [Saccharomyces cerevisiae EC1118]
          Length = 1280

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 44/280 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +      +G +++    +PP    + AD    EL I 
Sbjct: 669 IIPKIVPMGTITRRAVENTWLTASNAKANRIGSELKTQVKAPPGYCFVGADVDSEELWIA 728

Query: 759 AHI----------AKITPLYQVF--ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           + +            I  +          D+H   A +I G          R  AK  N+
Sbjct: 729 SLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTA-QILGC--------SRNEAKIFNY 779

Query: 807 SIIYGISPFRLATQLR---------IPRSEAADYIKRYFHRFPGIHEYIE---------- 847
             IYG      +  L+           +  A    +    +      + +          
Sbjct: 780 GRIYGAGTKFASQLLKRFNPSLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESIL 839

Query: 848 --KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905
             K ++   Q      + G  I Y  +   K+   N    + IN  IQ S  D       
Sbjct: 840 FNKLESIAEQETPKTPVLGCGITYSLM--KKNLRANSFLPSRINWAIQSSGVDYLHLLCC 897

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           S+   ++ + L  ++ + IHDE+ F V E++   A+  + 
Sbjct: 898 SMEYIIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQ 937


>gi|50310391|ref|XP_455215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74605424|sp|Q6CLH4|FEN1_KLULA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|49644351|emb|CAG97923.1| KLLA0F02992p [Kluyveromyces lactis]
          Length = 381

 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 90/296 (30%), Gaps = 48/296 (16%)

Query: 31  DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM 90
           DG   + + G   M ++ L+         +   +FD      +       K  R      
Sbjct: 58  DGETTSHLMG---MFYRTLRMIDHGIKPCY---VFDGSPPELKKYELDKRKVRREDTEAK 111

Query: 91  LLP---QLPLVRL-----------------ATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
           L     Q  +++                       GIP +     EA+   A        
Sbjct: 112 LKEATEQAEIIKHERRLVKVLPWHNEEAQKLLSLMGIPYVVAPA-EAEAQCAELAK---- 166

Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQA 184
            G      S D D +   +P    + T  E      ++ D + +     +   + + L  
Sbjct: 167 SGKVFAAASEDMDTLCYQTPVLLRHLTFSEARKLPIQEFDTDVIYNTLDLTQTQFIDLGI 226

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           + G   D   GI G+G   A  L++E+G+LE I+           R  I E     + +R
Sbjct: 227 ILG--CDYCEGIKGVGPVNALKLIKEHGSLEAIVEKFENGDISSGRWKIPEGW-QFKEAR 283

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATTYDC 294
            L  ++ DV I      L  E+     LI F               I R+      
Sbjct: 284 DL-FMQPDV-IPSEEVTLKWEEPKAEELIEFMVKEKGFNEDRIKSGIERLRKGLKV 337


>gi|729476|sp|P39749|FEN1_MOUSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|499649|gb|AAC37664.1| endonuclease-1 [Mus musculus]
          Length = 378

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 139 CKHLLSLMGIPYLDAPS-EAEASCAALAK----AGKVYAAATEDMDCLTFGSPVLMRHLT 193

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  V+++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 194 ASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG--SDYCESIRGIGAKRAVDLIQKH 251

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++V              L   + N   
Sbjct: 252 KSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVV--------DPESVELKWSEPNEEE 303

Query: 272 LISF------LKALEFTKLINRVATT 291
           L+ F               + R++ +
Sbjct: 304 LVKFMCGEKQFSEERIRSGVKRLSKS 329


>gi|326427333|gb|EGD72903.1| hypothetical protein PTSG_04632 [Salpingoeca sp. ATCC 50818]
          Length = 1060

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 87/276 (31%), Gaps = 42/276 (15%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +  F +   T++ R         + P    +G +++    +PP  K + AD    EL I 
Sbjct: 714 ILPFITTMGTISRRARESTWLTASNPKPNRIGSELKAMVRAPPGCKFVGADVDSQELWIA 773

Query: 759 AHIAKITPLYQVFENSLDIHRMVA-------------AEIFGVNIEKVSPQMRRHAKTIN 805
           A       L         IH   A             +++     E V       +K  N
Sbjct: 774 AL------LGDARFTG--IHGSTALGWMTLQGSKKDKSDMHTKTAEIVGCHTG-GSKIFN 824

Query: 806 FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEY----------IEKTK 850
           +  IYG        L  Q    I   EA       + +  G              +    
Sbjct: 825 YGRIYGAGRPFAKGLIMQFNPTIKEDEAKTLANELYDKTKGQMTSLGYSGGSESEMFNQL 884

Query: 851 NFVRQNGYVETIFGRRIHY----DEINSPKSSIRNINE-RAAINAPIQGSAADITRRAMI 905
             +      +T F              + K   +  +     IN  +Q SA D     ++
Sbjct: 885 EEIANRKVPKTPFLGFRLTAGLQPRYLAKKGRKKATDYLPTRINWVVQSSAVDYLHLMLV 944

Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
           S+   +  + +  ++ + IHDE+ + V +E++   +
Sbjct: 945 SMKYFITQYDMKARLCITIHDEVRYIVADEDVARFA 980


>gi|317376191|sp|B9EMY6|FEN1_SALSA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|221220444|gb|ACM08883.1| Flap endonuclease 1-B [Salmo salar]
 gi|221221934|gb|ACM09628.1| Flap endonuclease 1-B [Salmo salar]
          Length = 380

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 89/278 (32%), Gaps = 50/278 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNENGETTSHLMG---MFYRTIRMLEHGIKPVY---VFDGKPPQLKSGELEKRGERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            ++L                              +      G+P IE    EA+   A  
Sbjct: 108 EKLLAQAQEAGEQENIDKFSKRLVKVTQQHNDECKKLLTLMGVPYIEAPC-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +   +     + T  E      ++     +++   +  E+
Sbjct: 167 VK----AGKVFATATEDMDGLTFGTGVLLRHLTASEAKKLPIQEFQFTRLLQDINLTHEQ 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  L G   D    I GIG K A  L++++G++E IL N    K     + + + A 
Sbjct: 223 FIDLCILLG--CDYCGTIKGIGPKRAIDLIRQHGSIEEILENIDSSKHPAPEDWLYKEAR 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
              L       + DV +      L   + +   LI F+
Sbjct: 281 GLFL-------QPDV-VDCSTVDLKWSEPDEDALIQFM 310


>gi|330917946|ref|XP_003298025.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
 gi|311328997|gb|EFQ93872.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
          Length = 1293

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 100/294 (34%), Gaps = 46/294 (15%)

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            V FD      R +     K +R    E+    +   +     FG+P +     EA+   A
Sbjct: 914  VDFDEELKQLRAQQ----KKDRRDADEVTQTMIAECQQLLTLFGLPYVTAP-MEAEAQCA 968

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPE 177
                +   +G    I++ D D    +   T +Y  +       E    + +  ++ +  E
Sbjct: 969  ELVNLGLVDG----IVTDDSDTF--LFGGTRVYKNMFNAAKFVECYLAQDLASEFSLTRE 1022

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ +  L G   D   GIPGIG  TA  +L E+  LE        ++  + R+   E A
Sbjct: 1023 KMIAIAQLLG--SDYTTGIPGIGPVTALEILSEFQTLEAFRAWWDGVQSGQIRK--DEDA 1078

Query: 238  ETARLSR------------------KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
            +     R                  ++        +    E       +   L +FL   
Sbjct: 1079 KNPFRKRFRKNQGTKLFLPPNFPDPRVAEAYLHPEVDSDPEPFQWGVPDLASLRTFLS-- 1136

Query: 280  EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
                  +++  +++     + PV+ D+N  E +G         +  +    F+ 
Sbjct: 1137 ------SQIGWSWEKTDEVLVPVIRDMNRREKEGTQANITRFFEGAVGAGAFAP 1184


>gi|115456427|ref|NP_001051814.1| Os03g0834000 [Oryza sativa Japonica Group]
 gi|62510683|sp|Q75LI2|FEN12_ORYSJ RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
           Full=Flap structure-specific endonuclease 1-B; AltName:
           Full=OsFEN-1b
 gi|317374867|sp|B8AMS4|FEN12_ORYSI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
           Full=Flap structure-specific endonuclease 1-B
 gi|40714676|gb|AAR88582.1| flap endonuclease-1b [Oryza sativa Japonica Group]
 gi|108711942|gb|ABF99737.1| Flap endonuclease-1b, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550285|dbj|BAF13728.1| Os03g0834000 [Oryza sativa Japonica Group]
 gi|215692762|dbj|BAG88230.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218194043|gb|EEC76470.1| hypothetical protein OsI_14202 [Oryza sativa Indica Group]
 gi|222626117|gb|EEE60249.1| hypothetical protein OsJ_13256 [Oryza sativa Japonica Group]
          Length = 412

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 97/281 (34%), Gaps = 53/281 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + + G  N   ++L+   K         +FD      + +        R   
Sbjct: 55  TNEAGEVTSHLQGMLNRTVRILEAGIKP------VFVFDGEPPDMKKKELAKRSLKRDGS 108

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            E L   + +                        +      G+P ++  G EA+   A  
Sbjct: 109 SEDLNRAIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPG-EAEAQCAAL 167

Query: 125 TYIAEKEGFAVT-IISTDKDLMQLVSPTTCLYDT------VKEEKIDIEHVIKKWGIPPE 177
                 E   V  I S D D +   +     + T          + ++  V+++ G+  +
Sbjct: 168 C-----ENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMD 222

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L  L+G   D    I GIG + A  L++++G +E ++ N S+ +     +    Y 
Sbjct: 223 QFIDLCILSG--CDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDW--PYQ 278

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           E   L ++   + TD+P        +    +   LI+FL A
Sbjct: 279 EVRALFKEPN-VCTDIP------DFLWTPPDEEGLINFLAA 312


>gi|29467052|dbj|BAC66965.1| flap endonuclease-1b [Oryza sativa Japonica Group]
 gi|37496995|dbj|BAC98428.1| flap endonuclease-1b [Oryza sativa Japonica Group]
          Length = 412

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 97/281 (34%), Gaps = 53/281 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + + G  N   ++L+   K         +FD      + +        R   
Sbjct: 55  TNEAGEVTSHLQGMLNRTVRILEAGIKP------VFVFDGEPPDMKKKELAKRSLKRDGS 108

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            E L   + +                        +      G+P ++  G EA+   A  
Sbjct: 109 SEDLNRAIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPG-EAEAQCAAL 167

Query: 125 TYIAEKEGFAVT-IISTDKDLMQLVSPTTCLYDT------VKEEKIDIEHVIKKWGIPPE 177
                 E   V  I S D D +   +     + T          + ++  V+++ G+  +
Sbjct: 168 C-----ENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMD 222

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L  L+G   D    I GIG + A  L++++G +E ++ N S+ +     +    Y 
Sbjct: 223 QFIDLCILSG--CDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDW--PYQ 278

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           E   L ++   + TD+P        +    +   LI+FL A
Sbjct: 279 EVRALFKEPN-VCTDIP------DFLWTPPDEEGLINFLAA 312


>gi|255076159|ref|XP_002501754.1| flap endonuclease-1 [Micromonas sp. RCC299]
 gi|317374911|sp|C1E3X9|FEN1_MICSR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|226517018|gb|ACO63012.1| flap endonuclease-1 [Micromonas sp. RCC299]
          Length = 384

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 85/278 (30%), Gaps = 50/278 (17%)

Query: 28  RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPK 86
               G   + + G F   L  L    +          +FD    T +       K  R  
Sbjct: 55  TNEAGEVTSHLQGMFTRTLRMLKAGIKPVY-------VFDGKPPTMKGGELAKRKDKREA 107

Query: 87  IPEMLLP------QLPL-----------------VRLATQAFGIPAIEIQGFEADDIIAT 123
               L        Q  +                 V    +  G+P  E    EA+   A 
Sbjct: 108 AESALEKAKEAGDQEEIEKLSKRTVRVSKVHSEEVMKLARFLGLPVFEAPC-EAEATCAA 166

Query: 124 YTYI-----AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
                    A  E       ST K    L++P++     +   + D + ++    +  ++
Sbjct: 167 LCKAGLVYAAASEDMDTLCFSTPKLARNLMAPSSQEKPIL---EFDFDKLLAGLELTWDQ 223

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + +  L G   D    I GIG   A   +++YGN+E +L +  + K     +   + A 
Sbjct: 224 FIDVCILCG--CDYCDSIKGIGPVNALKYIKQYGNIEGLLEHLDKEKYPVPDDWPYKEAR 281

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
               + ++V              L     +   +++FL
Sbjct: 282 VLFKNPEVVQT--------DGLTLKWTAPDEEAVVAFL 311


>gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
 gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
          Length = 204

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 24/178 (13%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            S +    T  ++    +   + +S  D   D       + I L    + +         
Sbjct: 18  DSVAIDTETMGLNPHRDRLCVVQLSNGDGSAD------VVQIPLGHTEAPN--------- 62

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                LKK   +    KI H  ++D   L    G+  +      + S +  +    H + 
Sbjct: 63  -----LKKLLGDPAVTKIFHFARFDLSALSNALGVMPQPIYCTKIASRLCRTYTDRHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            + ++ L     ++ K ++SS    +        +A  +   +  L   L   L  E 
Sbjct: 118 DLVREVLGI---DLSKQQQSSDWGAQNLTDAQLAYAASDVLHLHALRARLDAMLAREG 172


>gi|261244970|ref|NP_001159668.1| flap endonuclease 1 [Ovis aries]
 gi|317376193|sp|C8BKD0|FEN1_SHEEP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|256665367|gb|ACV04829.1| flap structure-specific endonuclease 1 [Ovis aries]
          Length = 380

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 27/242 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           L+ F               + R++ +              +  + +     E E      
Sbjct: 306 LVRFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGAAK 365

Query: 326 IK 327
            K
Sbjct: 366 KK 367


>gi|238695127|ref|YP_002922321.1| RnaseH ribonuclease [Enterobacteria phage JSE]
 gi|220029263|gb|ACL78198.1| RnaseH ribonuclease [Enterobacteria phage JSE]
          Length = 315

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 17/165 (10%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
            + +   +   +++   +   + FD     +R +I P YK NR +  +       ++  A
Sbjct: 61  LDTMRYNMTKFKEQYPIT--VLAFDSSKGYWRRDIAPYYKRNRKEKRDADPRDWEMIFAA 118

Query: 102 T--------QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TT 152
                    +      I++   EADDIIA  T     EG  V I S D D  QL      
Sbjct: 119 INKITEEFKENMPYHVIKVDKVEADDIIAVLTKKFSVEGRQVLINSGDGDYTQLHKYKNV 178

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
             +  V++          K+G  P K + ++ + GD+ D +  I 
Sbjct: 179 KQWAPVQKAWK-----KCKYG-SPYKDLMVKCVKGDAKDGVASIK 217


>gi|61806419|ref|YP_214196.1| T7-like exonuclease [Prochlorococcus phage P-SSP7]
 gi|61374344|gb|AAX44198.1| T7-like exonuclease [Prochlorococcus phage P-SSP7]
 gi|265525456|gb|ACY76222.1| predicted protein [Prochlorococcus phage P-SSP7]
          Length = 259

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 24/200 (12%)

Query: 54  KESIASHFAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           K+    +  +I F      FR +I P+YK +R +       +  +++   + +    I  
Sbjct: 50  KDVFPFYEDIILFFTSPNNFRKKILPEYKGHRNRKKPCGYKR--VIQELKKNY--KVILR 105

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
              EADD +  Y            I+S DKD+ Q+             +  D    +   
Sbjct: 106 DTLEADDAMGIYATKHTGN----VIVSPDKDMRQIA-----------GKLYDFNETVDIT 150

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
                +   +Q + GD+ D   G+PGIG K A  + +  G     ++     K     + 
Sbjct: 151 PDEGARWHLIQTMAGDNTDGYSGVPGIGVKRAEQIFKLKGYTWKAVVETFEEKGMTEEDA 210

Query: 233 ILEYAETARLSRKLVMLRTD 252
           ++     ARL+R L     D
Sbjct: 211 LM----NARLARILTSTDYD 226


>gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB]
 gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB]
          Length = 339

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 94/225 (41%), Gaps = 26/225 (11%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +K+S   +  +S+  + +   +++  + L++    S     D+M  F  K   + +    
Sbjct: 44  KKVSSADVIENSWMWVDSEAKVEEAREDLDSSSLISLDTEYDSMHYFREKLCLVQV---- 99

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                + K   +F   +                 L +L+ +F +   LK+ H    D  +
Sbjct: 100 ----RASKRTYVFDPFNGID--------------LQFLRPYFADPRLLKVTHAGDNDIRI 141

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R YG   R   D    +++L S   +  ++SI +++L    ++  K ++S      +S
Sbjct: 142 LKRDYGFEFRNIFDTHRAAHMLGSQYLA--LSSIIEQYLGVEIEKTKKMQRSKWEARPLS 199

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           + Q+  +A++++  +  L+  L  KL ++ +     ++ + +  V
Sbjct: 200 EGQL-RYAVQDTAYLADLYRHLNEKLSLKGMQERARKVFENVAAV 243


>gi|257388818|ref|YP_003178591.1| flap endonuclease-1 [Halomicrobium mukohataei DSM 12286]
 gi|257171125|gb|ACV48884.1| XPG I domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 326

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 101/292 (34%), Gaps = 62/292 (21%)

Query: 5   NHLFLVDGSSFIYRAF------YATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           + +  VD  +++YR +      + +       DG  V  + G    L K  ++   +   
Sbjct: 22  DSVVAVDAHNWLYR-YLTTTVRFTSDEKYTTSDGTEVANLIGVVQGLPKFFEH---DLTP 77

Query: 59  SHFAVIFDYPAVTFRNEIYP-------------DYKANR--PKIPEMLLPQLPLV----- 98
                +FD      +++                +    R   K    L  Q   +     
Sbjct: 78  ---VFVFDGGVTELKDDEVEQRREAREAREEKLEAARERGDSKAVARLDSQTQRLTDTIL 134

Query: 99  ---RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
              R   +   +P ++    E +   A        +     + + D D + L +P T   
Sbjct: 135 TTTREVLRLLDVPVVDAPA-EGEAQAAHMARQNVVD----YVGTEDYDALLLGAPLTLRQ 189

Query: 156 DTVKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
            T     E +D +  +   GI  E++V    L G   D  PGI G+G KTA  L++E+G+
Sbjct: 190 LTSSGDPELMDFQATLDHHGITWEQLVDAAILMG--TDFNPGIDGVGPKTAIKLVKEHGD 247

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL-----VMLRTDVPITIPLE 260
           L   L           R+  +E+ +     R+L     V    D+ + +  +
Sbjct: 248 LWGALD---------ARDAHVEHGDRI---RELFLDPAVTDDYDLDLAVNPD 287


>gi|115465159|ref|NP_001056179.1| Os05g0540100 [Oryza sativa Japonica Group]
 gi|62510701|sp|Q9SXQ6|FEN11_ORYSJ RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
           Full=Flap structure-specific endonuclease 1-A; AltName:
           Full=OsFEN-1a
 gi|4587225|dbj|BAA36171.1| FEN-1 [Oryza sativa Japonica Group]
 gi|113579730|dbj|BAF18093.1| Os05g0540100 [Oryza sativa Japonica Group]
 gi|222632398|gb|EEE64530.1| hypothetical protein OsJ_19381 [Oryza sativa Japonica Group]
          Length = 380

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 49/277 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN-EIYPDYKANRPK 86
               G   + + G  N   +LL+   K     +   +FD      +  E+   Y + R  
Sbjct: 55  TNEAGEVTSHLQGMFNRTIRLLEAGIK---PVY---VFDGKPPDLKKQELAKRY-SKRED 107

Query: 87  IPEMLLPQ-----------------------LPLVRLATQAFGIPAIEIQGFE----ADD 119
             + L                              +   +  G+P +E         A  
Sbjct: 108 ATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAAL 167

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            I    Y    E          + L  L+ P++     +   + ++  V+++  +  ++ 
Sbjct: 168 CINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVM---EFEVAKVLEELELTMDQF 224

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L+G   D    I GIG +TA  L++++G++E+IL N ++ + +   +    Y E 
Sbjct: 225 IDLCILSG--CDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDW--PYQEA 280

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            RL ++         +T+ +  L     +   L+ FL
Sbjct: 281 RRLFKE-------PNVTLDIPELKWNAPDEEGLVEFL 310


>gi|311247499|ref|XP_003122675.1| PREDICTED: flap endonuclease 1-like isoform 1 [Sus scrofa]
 gi|311247510|ref|XP_003122679.1| PREDICTED: flap endonuclease 1-like isoform 1 [Sus scrofa]
          Length = 380

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      G+P ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGVPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  V+++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEV--------LDPEAVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATT 291
           L+ F               + R++ +
Sbjct: 306 LVKFMCGEKQFSEERIRSGVRRLSKS 331


>gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C]
 gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389]
 gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C]
 gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389]
          Length = 203

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 25/212 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                   E  G  +    T  ++ +  K   +  S  +               L    +
Sbjct: 7   QNDLPDDFELEGDLAIDTETMGLNLYRDKLCLLQFSNGNGDAH-----------LVHFLN 55

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYV 495
           Q+    N         LK    ++   KI H  ++D   + +Y GI +       + S +
Sbjct: 56  QNYNAPN---------LKNLLSDKERCKIFHFARFDLAAIKKYLGIDLENIFCTKISSKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +   SH +  I ++ L      I K ++SS        S  QE+A ++   + +L   
Sbjct: 107 VRTYTESHGLKDICRELLGVN---ISKQQQSSYWGADNLSSDQQEYAAKDVLYLHKLREH 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           L   L+ E    + + +    +   + +++ G
Sbjct: 164 LIEMLVKENRFELAQDI-FKFLPTRANLDLVG 194


>gi|114327365|ref|YP_744522.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315539|gb|ABI61599.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 259

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 20/213 (9%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L+     +    T  ++    +   I IS  D                  H 
Sbjct: 57  HRHDLPPSLDIGPIIAIDTETMGLNHHRDRLCLIQISAGDGH---------------AHL 101

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
            Q    +          LK+   N   +K+ H  ++D  +L    GI+M   +   + + 
Sbjct: 102 VQIVPERLGGKGADCPNLKRLLSNPGCVKLMHYARFDVGILQNALGIAMSNVKCTKIAAK 161

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + +  L     EI K ++SS         +   +A  +   +  LW 
Sbjct: 162 LVRTFTDRHGLKDLCRDLLGV---EISKQQQSSDWGAPELTPEQMAYAASDVLYLHALWN 218

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            L   LI E  L + E      +   ++++  G
Sbjct: 219 RLEGLLIREDRLALAEAC-FAFLPARARLDYLG 250


>gi|291409580|ref|XP_002721064.1| PREDICTED: flap structure-specific endonuclease 1 [Oryctolagus
           cuniculus]
          Length = 380

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPSKYAVPENWLHKEAQQLFLEPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATT 291
           L+ F               + R++ +
Sbjct: 306 LVKFMCGEKQFSEERIRSGVRRLSRS 331


>gi|224050601|ref|XP_002192880.1| PREDICTED: flap structure-specific endonuclease 1 [Taeniopygia
           guttata]
          Length = 386

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP +E  G EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKKLLTLMGIPYVEAPG-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E K        +  +++   +  E+ V L  L G   D    I GIG K A  L++E+
Sbjct: 196 ASETKKLPIQEFHLNRILQDLQLTWEQFVDLCILLG--CDYCASIRGIGPKRAVELIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       +   A+   L         DV I      L   + +  +
Sbjct: 254 KSIERIVQQLDTKKYPLPENWLHREAQKLFL-------EPDV-IDPDAVELKWSEPDEEQ 305

Query: 272 LISF------LKALEFTKLINRVATT 291
           L+ F               + R++ +
Sbjct: 306 LVQFMCGEKQFNEERIRNGVKRLSKS 331


>gi|56750860|ref|YP_171561.1| ribonuclease D [Synechococcus elongatus PCC 6301]
 gi|81299489|ref|YP_399697.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
 gi|56685819|dbj|BAD79041.1| probable ribonuclease D [Synechococcus elongatus PCC 6301]
 gi|81168370|gb|ABB56710.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
          Length = 211

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 64/205 (31%), Gaps = 25/205 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            +       + + +     + +       ++    +   + +                  
Sbjct: 9   HLCEQDLTDELLAQYRQSPAIAIDTEAMGLNFHRDRLCLVQLCDSAGIT----------- 57

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                    +  +    + +   L+   E+    K+ H  ++D   L    GI+++    
Sbjct: 58  ---------TCVRIAQGQTVAPNLQALCEDPQITKVFHFARFDITALKHGLGIAVQPIFC 108

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS-QVQEHAIENSN 547
             + S +  +  S H + S+ Q+ +     E+ K+ +SS   +  + S +   +A  +  
Sbjct: 109 TKIASKLARTYSSQHGLKSLLQELVGV---ELDKTAQSSDWGNAAALSHEQMRYACNDVR 165

Query: 548 VILQLWLLLRPKLIVEKLLHVYERL 572
            +L     L   L  E    + +  
Sbjct: 166 YLLAAQAKLTTMLQREGRWQLAQDC 190


>gi|317374927|sp|Q4WWJ1|FEN1_ASPFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 395

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 141 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++  G+  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLG--CDYLEPIPKVGPNTALKLIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I EY      +R+L +         P      E  +   
Sbjct: 254 GSLEKVVEAIENDPKKKY--VIPEYWPYQD-ARELFLHPDVREADHPECDFKWEAPDVEA 310

Query: 272 LISFL 276
           L+ FL
Sbjct: 311 LVEFL 315


>gi|296089863|emb|CBI39682.3| unnamed protein product [Vitis vinifera]
          Length = 416

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 98/282 (34%), Gaps = 51/282 (18%)

Query: 25  LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR 84
            +     G   + + G   M  + ++         +   +FD      + +      + R
Sbjct: 52  EMLTNEAGEVTSHLQG---MFSRTIRLLEAGLKPVY---VFDGKPPDLKKQELAKRFSRR 105

Query: 85  PKIPEMLLPQ-----------------------LPLVRLATQAFGIPAIEIQGFEADDII 121
               E L                              +   +  G+P IE    EA+   
Sbjct: 106 ADATEDLTEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPS-EAEAQC 164

Query: 122 ATYTYIAEKEGFAVT-IISTDKDLMQLVSPT--TCLYDTVKEE----KIDIEHVIKKWGI 174
           A            V  + S D D +   +P     L D    +    + DI  ++++  +
Sbjct: 165 AALCK-----SGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNL 219

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             ++ + L  L+G   D    I GIG +TA  L++++G++ENIL N +R + +   +   
Sbjct: 220 TMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDW-- 275

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            Y E  RL ++  +   D  + I          +   LI+FL
Sbjct: 276 PYQEARRLFKEPQVFSDDEQLDIKWSA-----PDEEGLITFL 312


>gi|332249905|ref|XP_003274094.1| PREDICTED: flap endonuclease 1 isoform 1 [Nomascus leucogenys]
 gi|332249907|ref|XP_003274095.1| PREDICTED: flap endonuclease 1 isoform 2 [Nomascus leucogenys]
          Length = 380

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A    L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAHHLFLEPEV--------LDPESVELKWSEPNEEE 305

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           L+ F               + R++ +              +  + +     E E    T 
Sbjct: 306 LVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTK 365

Query: 326 IKT 328
            K 
Sbjct: 366 KKA 368


>gi|317374932|sp|B0XZ33|FEN1_ASPFC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 395

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 141 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++  G+  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLG--CDYLEPIPKVGPNTALKLIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I EY      +R+L +         P      E  +   
Sbjct: 254 GSLEKVVEAIENDPKKKY--VIPEYWPYQD-ARELFLHPDVREADHPECDFKWEAPDVEA 310

Query: 272 LISFL 276
           L+ FL
Sbjct: 311 LVEFL 315


>gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
 gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
          Length = 204

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 26/186 (13%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
             S +    T  +     +   + +S  D   D   ++     D                
Sbjct: 17  NDSVAIDTETMGLHPHRDRLCVVQLSNGDGSADV-VQIPQGHSDAPN------------- 62

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDI 505
                 LKK   + + LKI H  ++D   L    G+  +      + S +  +    H +
Sbjct: 63  ------LKKLLGDPNILKIFHFARFDLAALSNALGVMPQPVYCTKIASRLTRTYTDRHGL 116

Query: 506 ASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             + ++ L+    ++ K ++SS    D +SD+Q+  +A  +   +  L   L   L  E 
Sbjct: 117 KDLVRELLNV---DLSKQQQSSDWGADTLSDAQLA-YAASDVLHLHALRDKLDAMLAREN 172

Query: 565 LLHVYE 570
              + +
Sbjct: 173 RTELAQ 178


>gi|311247497|ref|XP_003122676.1| PREDICTED: flap endonuclease 1-like isoform 2 [Sus scrofa]
 gi|311247508|ref|XP_003122680.1| PREDICTED: flap endonuclease 1-like isoform 2 [Sus scrofa]
          Length = 393

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      G+P ++    EA+   A         G      + D D +   SP    + T
Sbjct: 154 CKHLLSLMGVPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 208

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  V+++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 209 ASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 266

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++        +      L   + N   
Sbjct: 267 KSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEV--------LDPEAVELKWSEPNEEE 318

Query: 272 LISF------LKALEFTKLINRVATT 291
           L+ F               + R++ +
Sbjct: 319 LVKFMCGEKQFSEERIRSGVRRLSKS 344


>gi|330689555|pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
           In Complex With Substrate 5'-Flap Dna And K+
 gi|330689556|pdb|3Q8M|B Chain B, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
           In Complex With Substrate 5'-Flap Dna And K+
          Length = 341

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D   +   SP    + T
Sbjct: 140 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMACLTFGSPVLMRHLT 194

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 195 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKH 252

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A    L  ++        +      L   + N   
Sbjct: 253 KSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEV--------LDPESVELKWSEPNEEE 304

Query: 272 LISF------LKALEFTKLINRVATT 291
           LI F               + R++ +
Sbjct: 305 LIKFMCGEKQFSEERIRSGVKRLSKS 330


>gi|33866568|ref|NP_898127.1| putative ribonuclease D [Synechococcus sp. WH 8102]
 gi|33633346|emb|CAE08551.1| putative ribonuclease D [Synechococcus sp. WH 8102]
          Length = 214

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      W ++   + + +       +     +   + I+  D +      V  I I 
Sbjct: 13  VFDGDLDADWTERYLRMSALAVDTEAMGLIHGRDRLCLVQIADADDR------VCCIRIG 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L   ++ +              L++  E     K+ H  ++D   L    GI++      
Sbjct: 67  LGQTSAPN--------------LQRLLEAASVEKVFHFARFDVAALASGLGIAVSPIFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    +D++SD Q+  +A  +  
Sbjct: 113 KVGSRLGRTYTPRHGLKDLVMELVGV---ELDKGAQSSDWGRVDELSDVQLA-YAANDVR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E    + +R     I V++ ++ 
Sbjct: 169 YLLPARQKLEAMLRREGRWDLAQRC-FGCIPVIADLDR 205


>gi|302789073|ref|XP_002976305.1| hypothetical protein SELMODRAFT_416415 [Selaginella moellendorffii]
 gi|300155935|gb|EFJ22565.1| hypothetical protein SELMODRAFT_416415 [Selaginella moellendorffii]
          Length = 300

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 10/114 (8%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYP-AVTFRNEIYPDYKANRPKIPE---------MLLP 93
            LW +    R+  +A     +FD      +R +I P YKA R K             L  
Sbjct: 136 FLWWMRAFLRRIVLADPVIAVFDGEFGNDYRRKILPSYKAGRRKFKPLDPSFKWTRGLEA 195

Query: 94  QLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
                +   +   IP +++   EADD++ T             I S DKD  QL
Sbjct: 196 SFSRFQRFLRQCNIPVVKVDNAEADDVVTTLARQVTDRSLKAVIASPDKDFKQL 249


>gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
          Length = 567

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 82/546 (15%), Positives = 156/546 (28%), Gaps = 173/546 (31%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +Q  E+A  +   +  +   L          H Y   +  +  +   +   G+ +D DL 
Sbjct: 4   AQFVEYARRDVAAMRDVVKRL--------PSHNYSGAELALWFLDQTINDRGVLVDTDLA 55

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +     + +   +L      L+G     ++ +   D L   L       T+ G      Q
Sbjct: 56  QAAIGAVERAKCTLAHRTEALTGGAVQAATQR---DALLHHL------STEHGVALPDMQ 106

Query: 656 DLEQINCGDNPII-----KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
                 C D+P++     + +   RQ S   +    +L N  ++  +   T     ++ T
Sbjct: 107 QHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRT 166

Query: 711 GRLASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTK 743
           GR A       N+P  T     I                           R   I+P  K
Sbjct: 167 GRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHK 226

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFEN------------------------------ 773
           KL+ AD S IE R+LA +A  TP    F +                              
Sbjct: 227 KLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQ 286

Query: 774 ----------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI--------------I 809
                       DI++   A  FG+  + V+ Q R+  K    ++              +
Sbjct: 287 RNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAM 346

Query: 810 YGISPFRLATQLRIPRSEAAD----------------------------YIKRYFHRFPG 841
           Y I    +A Q  +P     +                            + + + +  P 
Sbjct: 347 YHIDLEAMAEQAALPPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPA 406

Query: 842 IHEYIEKTK----------NFVRQNGYVETIFGR---RIHYD------------------ 870
           I  + +  +                  +   + R   R+H                    
Sbjct: 407 IAAFWKALQFAATDAIRHPETAHTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGAL 466

Query: 871 -----EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
                   + K +         +    Q  + D+    M ++  +        +++L +H
Sbjct: 467 SYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAA------GYQIVLTVH 520

Query: 926 DELVFE 931
           DE++ E
Sbjct: 521 DEIITE 526


>gi|171686350|ref|XP_001908116.1| hypothetical protein [Podospora anserina S mat+]
 gi|161087386|gb|ABX56854.1| mitochondrial DNA polymerase gamma catalytic subunit [Podospora
           anserina]
 gi|170943136|emb|CAP68789.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1155

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 94/319 (29%), Gaps = 54/319 (16%)

Query: 670 NILEWRQLSKIKSTYADSLPNHINKRT--------QRVHTFYSLASTMTGRLASLEPNLQ 721
            I    ++      Y  +LP  +  +           +        T+T R         
Sbjct: 628 WISSRDRIMSQLVVYESNLPEPVRPKDLPEDAPTPGFILPQVIPMGTVTRRAVENTWLTA 687

Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA------------KITPLYQ 769
           +   K  +G +++    +PP    + AD    EL I + +                 L  
Sbjct: 688 SNAKKNRVGSELKAMVRAPPGYVFVGADVDSEELWIASVVGDATFKLHGGNAIGFMTLEG 747

Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF-------------- 815
                 D+H   AA I G+         R  AK  N+  IYG                  
Sbjct: 748 TKAQGTDLHSRTAA-ILGIT--------RNDAKVFNYGRIYGAGLKFAGQLLRQFNPSLS 798

Query: 816 -----RLATQLRIPRSEAADYIKRYFHRFPGIH----EYIEKTKNFVRQNGYVETIFGRR 866
                 +A +L           K  + R P        ++        +  +  T     
Sbjct: 799 EQETLDIAGKLYATTKGTKTNRKSLYKR-PFWRGGTESFVFNKLEEFAEQSHPRTPVLGA 857

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
              + + +     +     + IN  IQ S  D     ++S+        +A ++ + +HD
Sbjct: 858 GITEALTAR-FLSKGGYLTSRINWAIQSSGVDYLHLLIVSMDYLTRRFNIACRLAITVHD 916

Query: 927 ELVFEVPEEEITTASQIIV 945
           E+ + V E +   A+  + 
Sbjct: 917 EIRYLVQEHDKYRAAMALQ 935


>gi|297183461|gb|ADI19592.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0770_37D02]
          Length = 214

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 73/194 (37%), Gaps = 23/194 (11%)

Query: 381 VQKLETIGSASFKIITDTM-DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS 439
           +++LE   S +       +      K   +  ST +            +   +       
Sbjct: 20  LKELENHSSLAIDTEGSGLQIPHRDKLSLVQFSTGNNDAYIIQPNRKDYKAPN------- 72

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDS 498
                        +KK  EN+   KIGH ++YD   L +    +++   D  L S +  +
Sbjct: 73  -------------IKKILENDKITKIGHYLRYDISGLEYFLKCNVKNIFDTKLASKLCRT 119

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
              +H +  +A ++      + L S   +  +D+++D+Q+ ++   +   + ++   L  
Sbjct: 120 YSQNHGLKDLALEFCGKKLDKRLGSSDWNKNLDELTDAQL-QYCSNDVIYLHKIKDELYK 178

Query: 559 KLIVEKLLHVYERL 572
            L+ E  L +YE  
Sbjct: 179 MLVRENRLELYENC 192


>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
 gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
          Length = 377

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 80/214 (37%), Gaps = 28/214 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            YT I N +D+      L+T    +F +  D+M  F  K   + ++              
Sbjct: 3   EYTLIENDEDLAARCDLLKTEKRLAFDLEADSMHHFKEKVCLVQMA-------------- 48

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
                      DS   + L+ + LS LK  FE+    K+ H   +D   L R + I +  
Sbjct: 49  --------DPNDSFVVDPLSIDDLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNN 100

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +    L  G     +A++ +K    T   + K  + +    +    ++  +++ +
Sbjct: 101 LFDTEIACRFL--GIQKRSLAALLEKHFDLT---LDKRFQKTDWSRRPLSKEMIAYSVND 155

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
              +L+L  +L+ +L  E  L   E   +    V
Sbjct: 156 VAYLLELSDILKKRLEDEGRLAWAEEEFELQTRV 189


>gi|320033898|gb|EFW15844.1| DNA excision repair protein [Coccidioides posadasii str. Silveira]
          Length = 1143

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 103/298 (34%), Gaps = 36/298 (12%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P +     EA+   A    +   +G    I++ 
Sbjct: 803  KKDRRDADEVSQIMVAECQQLLKLFGLPYVTAP-MEAEAQCAELVSLGLVDG----IVTD 857

Query: 141  DKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +       E      + K++ +  +K++    L G   D   G
Sbjct: 858  DSDIF--LFGGTRIYKNMFNQAKFVECYLASDLEKEYSLDRKKLISFAHLLG--SDYTEG 913

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQK---------KRRENILEYAETARL---- 242
            IPGIG  TA  +L E+  LE      S+++           K R+   + A    L    
Sbjct: 914  IPGIGPVTALEILTEFPGLEEFRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPAF 973

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              +++ +   +  +            +   L  F        L++ V  + +     + P
Sbjct: 974  PDKRVDIAYLEPEVDPDPSAFQWGVPDLEALRQF--------LMSTVGWSSERTDEVLVP 1025

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            V+ D+N  E +G         D       F+       +   E+   +L  E   K  
Sbjct: 1026 VIRDVNRRELEGTQANITQFFDGPQGAGAFAPRRRAGGQSRMEKAFTRLRHEAAAKQQ 1083


>gi|303310363|ref|XP_003065194.1| XPG N-terminal domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
 gi|240104854|gb|EER23049.1| XPG N-terminal domain containing protein [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1143

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 103/298 (34%), Gaps = 36/298 (12%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P +     EA+   A    +   +G    I++ 
Sbjct: 803  KKDRRDADEVSQIMVAECQQLLKLFGLPYVTAP-MEAEAQCAELVSLGLVDG----IVTD 857

Query: 141  DKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +       E      + K++ +  +K++    L G   D   G
Sbjct: 858  DSDIF--LFGGTRIYKNMFNQAKFVECYLASDLEKEYSLDRKKLISFAHLLG--SDYTEG 913

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQK---------KRRENILEYAETARL---- 242
            IPGIG  TA  +L E+  LE      S+++           K R+   + A    L    
Sbjct: 914  IPGIGPVTALEILTEFPGLEEFRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPAF 973

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              +++ +   +  +            +   L  F        L++ V  + +     + P
Sbjct: 974  PDKRVDIAYLEPEVDPDPSAFQWGVPDLEALRQF--------LMSTVGWSSERTDEVLVP 1025

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            V+ D+N  E +G         D       F+       +   E+   +L  E   K  
Sbjct: 1026 VIRDVNRRELEGTQANITQFFDGPQGAGAFAPRRRAGGQSRMEKAFTRLRHEAAAKQQ 1083


>gi|254585117|ref|XP_002498126.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
 gi|317376173|sp|C5DZA9|FEN1_ZYGRC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|238941020|emb|CAR29193.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
          Length = 379

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 96/304 (31%), Gaps = 59/304 (19%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV---TFRNEIYPDYKANR 84
               G   + + G   M ++ L+         +   +FD       +F  +   D + + 
Sbjct: 55  STESGETTSHLMG---MFYRTLRMIDNGIKPCY---VFDGKPPILKSFELKKRSDKRVDT 108

Query: 85  PKIPEMLLPQLPLVRL-----------------ATQAFGIPAIEIQGFEADDIIATYTYI 127
            K  E  + Q   ++                    +  GIP I     EA+   A     
Sbjct: 109 EKKLEEAVDQAEKLKQERRLVKVSPEHNDEAKYLLKLMGIPYIVAPC-EAEAQCAQLAK- 166

Query: 128 AEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180
                  V    S D D +   +P    + T  E       +ID E V++   +  E+ V
Sbjct: 167 ----DGKVYAAASEDMDTLCYKTPYLLRHLTFSEAKKEPIHEIDTELVLQGLELTQEQFV 222

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS----RIKQKKRRENILEY 236
            L  + G   D    I GIG  TA  L++E+G+LE I+          K K   +     
Sbjct: 223 DLGIMLG--CDYCESIRGIGPVTALKLIKEHGSLEKIVEFIESGQANNKWKVPEDWPYNE 280

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVAT 290
           A    L+  +V    D+       +L     +  +LI F               I R+  
Sbjct: 281 ARQLFLNPDVV-NSQDI-------NLKWNPPDEEKLIEFLCHEKKFNEERVKSGIKRLQK 332

Query: 291 TYDC 294
               
Sbjct: 333 GLKS 336


>gi|328851794|gb|EGG00945.1| hypothetical protein MELLADRAFT_39474 [Melampsora larici-populina
           98AG31]
          Length = 1150

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 53/280 (18%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +    ++  T+T R             K  +G +++    +PP   ++ AD    EL I 
Sbjct: 642 ILPQVTVMGTVTRRATEKTWLAAANAKKNKIGTELKSMVRAPPGYAIVGADVDSEELWIS 701

Query: 759 AHIA----KITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
           + +      +     +             D+H   A  I G+         R  AK  N+
Sbjct: 702 SVMGDAQFGMHGATAIGWMTLEGTKSAGTDLHSKTAT-ILGI--------SRNEAKVFNY 752

Query: 807 SIIYGISPFR-----LATQLRIPRSEAADYIKRYFHRFPGIHEY---------------- 845
           S IYG          +    +  + EA    K+ +    G+  Y                
Sbjct: 753 SRIYGAGVTHAIQLLMKADPKTSKEEANQLAKKLYRSTKGLKNYRSEIFERRFWYGGTES 812

Query: 846 --IEKTKNFVRQN-------GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896
               K +     +       G   T   R+ H     S           + +N  +Q S 
Sbjct: 813 FLFNKLEEIALDDEPKTPALGCGITRALRKAHLPT-KSVGIDGGPDFMTSRVNWAVQSSG 871

Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDEL-VFEVPEE 935
            D     ++++   ++ + +  + ++ +HDE+    V E+
Sbjct: 872 VDYLHLLIVAMDYLIDRYGIQARYMISVHDEIRYLSVWED 911


>gi|148230426|ref|NP_001080960.1| flap endonuclease 1-A [Xenopus laevis]
 gi|82071385|sp|P70040|FEN1A_XENLA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
           Full=Flap structure-specific endonuclease 1-A;
           Short=xFEN-1a
 gi|1490870|gb|AAB06176.1| 5' nuclease xFEN1a [Xenopus laevis]
 gi|4106358|gb|AAD02814.1| flap endonuclease 1 [Xenopus laevis]
 gi|213623454|gb|AAI69765.1| 5' nuclease xFEN1a [Xenopus laevis]
 gi|213625072|gb|AAI69761.1| 5' nuclease xFEN1a [Xenopus laevis]
          Length = 382

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 21/185 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   +P    + T
Sbjct: 141 CKKLLTLMGIPYVDAPC-EAEATCAALVK----AGKVYAAATEDMDALTFGTPVLLRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  VI+  GI  E+ V L  L G   D    I GIG K A  L++++
Sbjct: 196 ASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLG--SDYCETIRGIGPKRAIDLIRQH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
             ++ I+ N    K       + + A+   L  ++V           +  L   + +   
Sbjct: 254 KTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVV--------DTDITELKWIEPDEEG 305

Query: 272 LISFL 276
           L++F+
Sbjct: 306 LVAFM 310


>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
 gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
          Length = 374

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 29/207 (14%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            +     +    + LET    +  +  D+M ++  K   +  +               + 
Sbjct: 6   ILTTDDAVVALAKDLETCAVFAVDLEADSMHSYQEKVCLLQFT---------------YH 50

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
           D +V     + G        L+ LK    +    KI H   YD   L R + I +RG  D
Sbjct: 51  DTTVLLDPLAAGD-------LAPLKPVLADSSIRKIFHAADYDIRCLARDFDIEIRGLFD 103

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            M+ S  L  G     +A +  K+   T   + K  + +    +    ++  +A E++  
Sbjct: 104 TMIASQFL--GEEKVGLADVLGKYFDVT---LDKRFQRADWSKRPLSPEMCHYAAEDTRH 158

Query: 549 ILQLWLLLRPKLIV-EKLLHVYERLDK 574
           + +L  +L P L   ++L  V E    
Sbjct: 159 LEKLVAILEPALKEKDRLWWVEEEFRL 185


>gi|116075800|ref|ZP_01473059.1| putative ribonuclease D [Synechococcus sp. RS9916]
 gi|116067115|gb|EAU72870.1| putative ribonuclease D [Synechococcus sp. RS9916]
          Length = 214

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 74/218 (33%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      W ++     + +       +     +   + I                  D
Sbjct: 13  VFDGDLDAAWAERYGRAKALAVDTEAMGLIHGRDRLCLVQIC-----------------D 55

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
              H +    G        L  L    E++   K+ H  ++D   L    GI++      
Sbjct: 56  PDDHVACVRIGLGQTEAPRLEAL---MESKAVEKVFHFARFDVAALASGLGIAVNPIFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    +D+++++Q+  +A  ++ 
Sbjct: 113 KVASRLARTYTPRHGLKDLVMELVGV---ELDKQAQSSDWGRVDELTEAQLA-YAANDAR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E    + ER   P I V++ ++ 
Sbjct: 169 YLLPARDRLELMLRREGRWELAERC-FPCIPVIADLDR 205


>gi|2674207|gb|AAB88707.1| flap endonuclease 1 [Xenopus laevis]
 gi|115528353|gb|AAI24978.1| Fen1-A protein [Xenopus laevis]
          Length = 382

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 21/185 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   +P    + T
Sbjct: 141 CKKLLTLMGIPYVDAPC-EAEATCAALVK----AGKVYAAATEDMDALTFGTPVLLRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  VI+  GI  E+ V L  L G   D    I GIG K A  L++++
Sbjct: 196 ASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLG--SDYCETIRGIGPKRAIDLIRQH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
             ++ I+ N    K       + + A+   L  ++V           +  L   + +   
Sbjct: 254 KTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVV--------DTDITELKWIEPDEEG 305

Query: 272 LISFL 276
           L++F+
Sbjct: 306 LVAFM 310


>gi|313631120|gb|EFR98660.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 80

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%)

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783
            +   L Q IR AFI+         D+S IE R++A +A       VF +   I+   A+
Sbjct: 5   NVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEASAS 64

Query: 784 EIFGVNIEKVSPQMRR 799
           ++F + IE+V   +R+
Sbjct: 65  QMFHIPIEEVDKNLRQ 80


>gi|326478513|gb|EGE02523.1| flap endonuclease [Trichophyton equinum CBS 127.97]
          Length = 353

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A      +  G A    S D D +   +P    + T
Sbjct: 137 CKRLLGLMGIPYLDAP-TEAEAQCAVLAKAGKVFGAA----SEDMDTLCFAAPVLLRHLT 191

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++  G+   + V L  L G   D +  IP +G  TA  +++++
Sbjct: 192 FSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLG--CDYLDPIPKVGPNTALKMIRDH 249

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G LE ++       +KK    I E     + +R+L       P   P         +   
Sbjct: 250 GTLEKVVEAIESDPKKKY--VIPEDWPYLQ-ARELFFNPDVRPADAPECDFKWSAPDVEG 306

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 307 LVRFLVE 313


>gi|149390675|gb|ABR25355.1| endonuclease putative [Oryza sativa Indica Group]
          Length = 262

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 18/183 (9%)

Query: 98  VRLATQAFGIPAIEIQGFE----ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
            +   +  G+P +E         A   I    Y    E          + L  L+ P++ 
Sbjct: 24  CKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSK 83

Query: 154 LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
               +   + ++  V+++  +  ++ + L  L+G   D    I GIG +TA  L++++G+
Sbjct: 84  KIPVM---EFEVAKVLEELELTMDQFIDLCILSG--CDYCDSIKGIGGQTALKLIRQHGS 138

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
           +E+IL N ++ + +   +    Y E  RL ++         +T+ +  L     +   L+
Sbjct: 139 IESILENINKDRYQIPEDW--PYQEARRLFKE-------PNVTLDIPELKWNAPDEEGLV 189

Query: 274 SFL 276
            FL
Sbjct: 190 QFL 192


>gi|119178413|ref|XP_001240880.1| hypothetical protein CIMG_08043 [Coccidioides immitis RS]
          Length = 1142

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 103/298 (34%), Gaps = 36/298 (12%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P +     EA+   A    +   +G    I++ 
Sbjct: 802  KKDRRDADEVSQIMVAECQQLLKLFGLPYVTAP-MEAEAQCAELVSLGLVDG----IVTD 856

Query: 141  DKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +       E      + K++ +  +K++    L G   D   G
Sbjct: 857  DSDIF--LFGGTRIYKNMFNQAKFVECYLASDLEKEYSLDRKKLISFAHLLG--SDYTEG 912

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQK---------KRRENILEYAETARL---- 242
            IPGIG  TA  +L E+  LE      S+++           K R+   + A    L    
Sbjct: 913  IPGIGPVTALEILTEFPGLEEFRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPAF 972

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              +++ +   +  +            +   L  F        L++ V  + +     + P
Sbjct: 973  PDKRVDIAYLEPEVDPDPSAFQWGVPDLEALRQF--------LMSTVGWSPERTDEVLVP 1024

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
            V+ D+N  E +G         D       F+       +   E+   +L  E   K  
Sbjct: 1025 VIRDVNRRELEGTQANITQFFDGPQGAGAFAPRRRAGGQSRMEKAFTRLRHEAAAKQQ 1082


>gi|71019835|ref|XP_760148.1| hypothetical protein UM04001.1 [Ustilago maydis 521]
 gi|46099778|gb|EAK85011.1| hypothetical protein UM04001.1 [Ustilago maydis 521]
          Length = 2098

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 97/317 (30%), Gaps = 57/317 (17%)

Query: 693  NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
            +++   +        T+T R         +   K  +G +++    +PP   L+ AD   
Sbjct: 1079 DRKKGLILPQVVSMGTVTRRAIENTWLTASNAKKNRVGSELKAMVKAPPGYSLVGADVDS 1138

Query: 753  IELRILAHIA----KITPLYQVFEN--------SLDIHRMVAAEIFGVNIEKVSPQMRRH 800
             EL I + +      I     V             D+H   A+ I G          R  
Sbjct: 1139 EELWICSVMGDAQFGIHGATAVGWMTLEGTKALGTDLHSKTAS-ILGT--------SRNQ 1189

Query: 801  AKTINFSIIYGISPFR-----LATQLRIPRSEAADYIKRYFHRFP----GIHEYIEKTKN 851
            AK  N+S IYG          L     +   EA    K  +           E+      
Sbjct: 1190 AKVFNYSRIYGAGIKHATHLLLKANPSVSNEEATQKAKELYMATKGQNTHTDEFFGAKFW 1249

Query: 852  FVRQNGYV---------------------ETIFGRRIHYDEINSPKSSIRNINERAAINA 890
            F     YV                      T    +    +++     +      + IN 
Sbjct: 1250 FGGTESYVFNKLESIALSDNPKTPALDCGVTNALTKKFLGKVDFGNGRLSEEYMPSRINW 1309

Query: 891  PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE--ITTASQIIVHSM 948
             +Q S  D     + ++    + + +  + +L +HDE+ + V +++      +  I +  
Sbjct: 1310 VVQSSGVDYLHLLITAMEWLSKRYSIDARFMLSVHDEVRYLVKDQDTYRAALALQIANIW 1369

Query: 949  EKACLPKINL---RVPL 962
             +A      L    +PL
Sbjct: 1370 TRAMF-AFKLQMDDLPL 1385


>gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 203

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 25/201 (12%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G  +    T  ++    K   +  S  + +             L    +Q+ T  N    
Sbjct: 18  GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAH-----------LVHFENQNYTAPN---- 62

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIA 506
                LK    ++   KI H  ++D   + +Y  I +       + S ++ +   SH + 
Sbjct: 63  -----LKALLSDKSRCKIFHFARFDLAAIKKYLEIELENIFCTKISSKLVRTYTDSHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            + ++ L+     I K ++SS        S+ +E+A ++   + QL  +L+  L+ E   
Sbjct: 118 DLCRELLNIN---ISKQQQSSYWRADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRF 174

Query: 567 HVYERLDKPMIDVVSQMEITG 587
            + + +    +   + +++ G
Sbjct: 175 ELAQDI-FRFVPTRANLDLLG 194


>gi|281341789|gb|EFB17373.1| hypothetical protein PANDA_008249 [Ailuropoda melanoleuca]
          Length = 1214

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 98/303 (32%), Gaps = 94/303 (31%)

Query: 730  GQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVF---------ENSL 775
            G +++    +PP   L+ AD    EL I      AH A++      F             
Sbjct: 853  GSELKAMVQAPPGYVLVGADVDSQELWIAAVLGDAHFARMHGCT-AFGWMTLQGRKSRGT 911

Query: 776  DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR----LATQLRIPRSEAAD 830
            D+H   AA +            R HAK  N+  IYG   PF     +    R+ R EAA+
Sbjct: 912  DLHSKTAATV---------GISREHAKIFNYGRIYGAGQPFAERLLMQFNHRLTRQEAAE 962

Query: 831  YIKRYFHRFPGIHEYI-----EKTKNFVR------QNGYVETIFGRRIHYDEIN-SPKSS 878
              ++ +    G+  Y      E     +       ++G+V     R+I  +    S    
Sbjct: 963  KAQQMYAVTKGLRRYRLSDEGEWLVRELHLPVDRTEDGWVSLQDLRKIQREASRKSRWKK 1022

Query: 879  IRNINERA-----------------------------------------------AINAP 891
               + ERA                                                +N  
Sbjct: 1023 WEVVAERAWMGGTESEMFNKLESIAMSDTPCTPVLGCRISRALEPSAVQGEFMTSRVNWV 1082

Query: 892  IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS------QIIV 945
            +Q SA D     ++++    E+  +  +  + IHDE+ + V EE+   A+       ++ 
Sbjct: 1083 VQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLT 1142

Query: 946  HSM 948
              M
Sbjct: 1143 RCM 1145


>gi|320162698|gb|EFW39597.1| DNA polymerase gamma [Capsaspora owczarzaki ATCC 30864]
          Length = 1596

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 101/305 (33%), Gaps = 56/305 (18%)

Query: 707  STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI----- 761
             T+T R         +   K  LG +++   ++P   +L+ AD    EL I A       
Sbjct: 922  GTITRRAVEPTWMTASNAKKNRLGSELKIKVVAPQGYQLVGADVDSEELWIAALFGDARF 981

Query: 762  -----AKITPLYQVFE--NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS- 813
                   +  +    +  +  D+H   AA +            R HAK  N++ IYG   
Sbjct: 982  GLHGATALGWMTLAGKKSDGTDMHSKTAATL---------KTDRDHAKIFNYARIYGAGM 1032

Query: 814  --PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ-----NGYVETIFGRR 866
                +L  Q     S+  +  KR    +       +       Q      G  E+    +
Sbjct: 1033 SYAQKLLKQFDASLSQ-EEADKRSSDLYASTKGRRDGQSRSPSQPTGEWRGGSESYTFNK 1091

Query: 867  IHYDEINSPKSS----------------IRNINERAAINAPIQGSAADITRRAMISVHKS 910
               ++I +                    I+       +N  +Q S  D     + SV   
Sbjct: 1092 --LEQIATKNPRTPALGCEICNALHPNVIKGEFATTRVNWAVQSSGVDYLHLLLTSVKWL 1149

Query: 911  LEDHKLATKMLLQIHDELVFEVPEEE------ITTASQIIVHSMEKACLPKINLRVPLKV 964
            ++ +K+  ++ + IHDE+ F V E +          + +   ++  A +   +L  PL V
Sbjct: 1150 VQRYKIDARLCITIHDEVRFLVRETDTLRLALAMQVANLWTRALFSAQVGVYDL--PLSV 1207

Query: 965  NIKVS 969
                 
Sbjct: 1208 AFFSG 1212


>gi|317374863|sp|B8AW67|FEN11_ORYSI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
           Full=Flap structure-specific endonuclease 1-A
 gi|218197185|gb|EEC79612.1| hypothetical protein OsI_20807 [Oryza sativa Indica Group]
          Length = 380

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 49/277 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN-EIYPDYKANRPK 86
               G   + + G  N   +LL+   K     +   +FD      +  E+   Y + R  
Sbjct: 55  TNEAGEVTSHLQGMFNRTIRLLEAGIK---PVY---VFDGKPPDLKKQELAKRY-SKRED 107

Query: 87  IPEMLLPQ-----------------------LPLVRLATQAFGIPAIEIQGFE----ADD 119
             + L                              +   +  G+P +E         A  
Sbjct: 108 ATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAAL 167

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            I    Y    E          + L  L+ P++     +   + ++  V+++  +  ++ 
Sbjct: 168 CINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVM---EFEVAKVLEELELTMDQF 224

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L+G   D    I GIG +TA  L++++G++E+IL N ++ + +   +    Y E 
Sbjct: 225 IDLCILSG--CDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDW--PYQEA 280

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            RL ++         +T+ +  L     +   L+ FL
Sbjct: 281 RRLFKE-------PNVTLDIPELKWNAPDEEGLVQFL 310


>gi|74219985|dbj|BAE40572.1| unnamed protein product [Mus musculus]
          Length = 380

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 94/300 (31%), Gaps = 58/300 (19%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  +G   + + G   M ++ ++         +   +FD      ++         R + 
Sbjct: 54  QNEEGETTSHLMG---MFYRTIRMMENGIKPVY---VFDGKPPQLKSGELAKRSERRAEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +      GIP ++    EA+   A  
Sbjct: 108 EKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAAL 166

Query: 125 TYIAEKEGFAVTIISTD-KDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
                     V   +T+  D +   SP    + T  E      ++  +  V+++ G+  E
Sbjct: 167 AKAG-----KVYAAATEGMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQE 221

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + V L  L G   D    I GIG K A  L+Q++ ++E I+      K       + + A
Sbjct: 222 QFVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEA 279

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
           +   L  ++        +      L   + N   L+ F               + R++ +
Sbjct: 280 QQLFLEPEV--------LDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKS 331


>gi|58532997|ref|YP_195220.1| rnh RNaseH [Synechococcus phage S-PM2]
 gi|58331464|emb|CAF34250.1| rnh RNaseH [Synechococcus phage S-PM2]
          Length = 287

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 21/162 (12%)

Query: 44  MLWKLLQNSRKESIASH--FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
           M+   L++  ++    +    + +D     +R +I+P YK NR K  E        +   
Sbjct: 31  MVLNSLRSYERQYGEKYGEMVLAYDSK-QYWRKDIFPYYKQNRKKDRERSGHNWSSIFEV 89

Query: 102 T--------QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTT 152
                      F    +E+ G EADD+I+T       +   + I+S DKD +QL   P  
Sbjct: 90  LNKIRDEIRDLFPYKVVEVLGAEADDVISTLCKNKGPKEL-ILILSGDKDFIQLHKYPGV 148

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
             Y+ + ++++  ++        P   +    L GD  D IP
Sbjct: 149 YQYNPITKKQLGYDN--------PHAFIKEHILKGDKSDGIP 182


>gi|326470331|gb|EGD94340.1| flap endonuclease [Trichophyton tonsurans CBS 112818]
          Length = 376

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A      +  G A    S D D +   +P    + T
Sbjct: 122 CKRLLGLMGIPYLDAP-TEAEAQCAVLAKAGKVFGAA----SEDMDTLCFAAPVLLRHLT 176

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++  G+   + V L  L G   D +  IP +G  TA  +++++
Sbjct: 177 FSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLG--CDYLDPIPKVGPNTALKMIRDH 234

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G LE ++       +KK    I E     + +R+L       P   P         +   
Sbjct: 235 GTLEKVVEAIESDPKKKY--VIPEDWPYLQ-ARELFFNPDVRPADAPECDFKWSAPDVEG 291

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 292 LVRFLVE 298


>gi|328773336|gb|EGF83373.1| hypothetical protein BATDEDRAFT_22008 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 388

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 91/280 (32%), Gaps = 54/280 (19%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + + G   ML++ ++        ++   +FD    T ++         R + 
Sbjct: 55  TNEAGETTSHLMG---MLYRTIRMVENGIKPAY---VFDGKPPTLKSGELQKRGERRAEA 108

Query: 88  PEML-----------------------LPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            +                           Q    R   +  GIP +E    EA+   A  
Sbjct: 109 QKEADTALETGDTENFNRFSRRTVKVTKEQNQECRRLLKLMGIPIVEAPC-EAEAQCAAL 167

Query: 125 TY--IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPP 176
                    G      S D D +   +P    + T  E       + + + V++      
Sbjct: 168 AKAGKVYAAG------SEDMDTLTFGAPVLLRHLTFSEAKKIPISEFNTQKVLEGLNFSH 221

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + L  L G   D    I GIG   A  L++E+  +ENI+ +  + K K        +
Sbjct: 222 DEFIDLCILLG--CDYCDSIRGIGPHRAVQLMKEHRTIENIIKSIDKTKYKVPENW--PF 277

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            E  +L ++      DV     +E L     +   L+ FL
Sbjct: 278 KEARQLFKE-----PDVLDPATVE-LNWTKPDEAGLLQFL 311


>gi|78211959|ref|YP_380738.1| 3'-5' exonuclease [Synechococcus sp. CC9605]
 gi|78196418|gb|ABB34183.1| 3'-5' exonuclease [Synechococcus sp. CC9605]
          Length = 214

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 75/218 (34%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      W ++       +       +     +   + I+  + +      V  + I 
Sbjct: 13  VFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDR------VACVRIG 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L    + +              LK+ FE     K+ H  ++D   L     I +      
Sbjct: 67  LGQTEAPN--------------LKRLFEAPTVEKVFHFARFDVAALAAGLSIEVNPVFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    +D+++D+Q+  +A  +  
Sbjct: 113 KVGSRLGRTYTPRHGLKDLVMELVGV---ELDKGAQSSDWGRVDELTDAQLA-YAANDVR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E    + +R     + VV++++ 
Sbjct: 169 YLLPARERLEQMLRREGRWDLAQRC-FQCVPVVAELDR 205


>gi|307102466|gb|EFN50740.1| hypothetical protein CHLNCDRAFT_37697 [Chlorella variabilis]
          Length = 389

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 89/285 (31%), Gaps = 57/285 (20%)

Query: 25  LLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKAN 83
            +     G   + + G F   +  L    +          +F+  A   + E        
Sbjct: 52  QMLTSETGEVTSHLQGMFFRTVRMLEAGMKP-------VFVFEGKAPELKREELAKRSNR 104

Query: 84  RPKIPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDI 120
           R      L                              +   +  G+P +E    EA+  
Sbjct: 105 REDANTELEAAKEAGNAEDVEKYSKRTVRVTREHNEECKRLLRLMGVPVLEAPS-EAEAQ 163

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE------KIDIEHVIKKWGI 174
            A        +G    I + D D +   +P    +            + D E V+K+  +
Sbjct: 164 CAQLCK----DGLVYGISTEDMDSLTFGTPKLIRHLMAPSSQKPLAMEFDHELVLKELEL 219

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             ++ + L  L G   D    I GIG   A  L++++G++E +L        KK +  I 
Sbjct: 220 TEDQFIDLCILCG--CDYTAKISGIGAVRALSLIKKHGSIEGVLAALD---SKKYQ--IP 272

Query: 235 E---YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           E   Y E  RL ++      DV     +  L     +   LI FL
Sbjct: 273 EPFPYQEARRLFKE-----PDVVKGDQIPQLKWTSPDTEGLIDFL 312


>gi|297697407|ref|XP_002825850.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1-like
            [Pongo abelii]
          Length = 1247

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 116/381 (30%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 801  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 860

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA-----HIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I A     H A +  
Sbjct: 861  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 920

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 921  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFA 970

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIH--------EYIEK---------------- 848
                +    R+ + EAA+  ++ +    G+         E++ +                
Sbjct: 971  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELHLPVDRTEGGWISL 1030

Query: 849  ------TKNFVRQNGYVETIFGRRIHYDEINSPK-------------------------- 876
                   +   R++ + +        +      +                          
Sbjct: 1031 QDLRKVQRETARKSQWRKWEVIAERAWKGGTESEMFNKLESIATSDIPRTPVLGCRISRA 1090

Query: 877  ---SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               S++R     + +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1091 LEPSAVREEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1150

Query: 934  EEEITTAS------QIIVHSM 948
            EE+   A+       ++   M
Sbjct: 1151 EEDRYRAALALQITNLLTRCM 1171


>gi|256064183|ref|XP_002570412.1| flap endonuclease-1 [Schistosoma mansoni]
 gi|227297250|emb|CAY18739.1| flap endonuclease-1, putative [Schistosoma mansoni]
          Length = 241

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 89/250 (35%), Gaps = 24/250 (9%)

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKE--- 160
            G+P +   G EA+   A            V  + + D D +   +P    + T  E   
Sbjct: 1   MGVPFVNAPG-EAEAQCAVLAK-----SGKVYAVGTEDMDALAFGTPVLLRHLTFSEARK 54

Query: 161 ---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
              ++ ++  V++  G+  ++ + L  L G   D +  I GIG K A  LL +Y +++ +
Sbjct: 55  MAIQEFNLTSVLEGLGLTMDQFIDLCILLG--CDYVDTIRGIGPKKALDLLHKYQSIDCV 112

Query: 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL- 276
           L N  + K     +   E A+   L+ ++               L   + +   L+ FL 
Sbjct: 113 LKNIDKSKYIVPDDWPYEDAKKLFLNPEVT--------DPSSIELKWNEPDEEGLVEFLC 164

Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
               F +   R        A N        N         ++ +    +      +S SD
Sbjct: 165 HKHGFNEERIRNGAKKLLKAKNTTTQGRIDNFFTCVPSKSDSSMSTPNSNNKKVSNSASD 224

Query: 337 QTSKINSEQT 346
           +  K N+  +
Sbjct: 225 RKRKSNTGAS 234


>gi|303279240|ref|XP_003058913.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460073|gb|EEH57368.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 360

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 85/277 (30%), Gaps = 48/277 (17%)

Query: 28  RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR-- 84
               G   + + G F      L    +          +FD    T +       K  R  
Sbjct: 55  TNDAGEVTSHLQGMFMRTCRMLEAGIKPVY-------VFDGKPPTMKGGELAKRKDKRDE 107

Query: 85  ---------------------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE----ADD 119
                                 +   +   Q   V    +  G+P  E         A  
Sbjct: 108 AEAALAKAKEAGDQEEIEKMSKRTVRVTRQQSQEVMQLARLMGLPVFEAPCEAEASCAAL 167

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
             A   Y A  E       +  K    L+SP +     +   + D E ++ +  +  E+ 
Sbjct: 168 CKAGLVYAAASEDMDTLCFACPKLARNLMSPASQGKPIL---EFDYEKILTELDMTWEQF 224

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + +  L G   D    I G+G   A  L++++GN+E +L +    K     +    Y E 
Sbjct: 225 IDVCILCG--CDYCDSIKGVGPVKAVSLIKKHGNIETLLQHLDTEKYPVPEDW--PYKEA 280

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
             L +       DV  T  LE L     +   +++FL
Sbjct: 281 RELFK-----HPDVVNTDGLE-LKWTAPDEEGIVAFL 311


>gi|317376195|sp|C6TEX6|FEN1_SOYBN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|255640175|gb|ACU20378.1| unknown [Glycine max]
          Length = 382

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 98/285 (34%), Gaps = 57/285 (20%)

Query: 25  LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN-EIYPDYKAN 83
            +     G   + + G   M  + ++         +   +FD      +  E+   Y + 
Sbjct: 52  EMLTNEAGEVTSHLQG---MFSRTIRLLEAGIKPVY---VFDGKPPDLKKQELAKRY-SK 104

Query: 84  RPKIPEMLLPQ-----------------------LPLVRLATQAFGIPAIEIQGFEADDI 120
           R +  E L                              +   +  G+P +E    EA+  
Sbjct: 105 RAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPS-EAEAQ 163

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT--TCLYDTVKEE----KIDIEHVIKKWGI 174
            A      +  G    ++S D D +   +P     L D   ++    + ++  ++++  +
Sbjct: 164 CAALCKAGKVYG----VVSEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNM 219

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             ++ + L  L+G   D    I GIG  TA  L++++G++ENI  N +     K R  I 
Sbjct: 220 TMDQFIDLCILSG--CDYCDSIRGIGGLTALKLIRQHGSIENIPENLN-----KERYQIP 272

Query: 235 EYAETARLSRKLVMLRTDVPITIPLE---HLILEDCNGPRLISFL 276
           +         +        P+ I  E    +     +   LI+FL
Sbjct: 273 DNWP-----YQEARRLFKEPLVITDEKELDIKWSSPDEEGLITFL 312


>gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
 gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
          Length = 704

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 88/272 (32%), Gaps = 39/272 (14%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641
           ++   G Q+DQ L +  +    +    +      LSG +F     ++    L  +L +  
Sbjct: 199 RINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQFTPGQREKFRVYLGQRLGYEL 258

Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701
                      T Q + +       + + I      +K  +    +L   ++   +    
Sbjct: 259 -----DNTQAGTFQVMLRDPGLPADVREMIELAIASNKTSTAKYAALDPAVSPDGRFRGG 313

Query: 702 FYSLASTMTGRLASLEPNLQNIPIKT-------DLGQKI--------------------- 733
                ++ T R A      QN+P +        +   +                      
Sbjct: 314 LQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHALFFDNLMLLGAAAL 373

Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-----SLDIHRMVAAEIFGV 788
           R   ++ P KKL+ AD S IE R+LA IA+     + F         D++ + A  I G 
Sbjct: 374 RGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGPDLYNITAVSIIGG 433

Query: 789 NIEKVSPQMRRH-AKTINFSIIYGISPFRLAT 819
           +   V  + R    K  + +  Y        T
Sbjct: 434 DPWNVEKKNRNAFGKVPDLASGYQGGVAGYQT 465


>gi|327198477|ref|YP_004327065.1| DNA polymerase [Erwinia phage phiEa104]
 gi|311875173|emb|CBX44433.1| DNA polymerase [Erwinia phage phiEa104]
          Length = 896

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/391 (14%), Positives = 116/391 (29%), Gaps = 87/391 (22%)

Query: 669 KNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
           +NI ++  L   + T  +         N +     R+    ++  T TGR++     +  
Sbjct: 510 QNIAKYNTLQHRRRTLENPKHDEKGWLNMVRADG-RMSAGATVFGTSTGRMSQWGI-VNT 567

Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL------- 775
                  G ++R  +       +IS D +  +L +L +                      
Sbjct: 568 PSSAAVYGAQMREVWTCEEGTSVISVDMNSAQLVLLCNFMGDPDFTYAVTKGKEDVEFKR 627

Query: 776 --------------------------------------DIHRM--------------VAA 783
                                                 D H                 A 
Sbjct: 628 TEDGRYYCEKLDKYLDPTIDKYLKYDDENDLYVVYTGTDAHSFNSIQFTLNEESDIITAR 687

Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI-PRSEAADYIKRYFHRFPGI 842
                ++       R+ AK   + +++G    + A  +++    E A   + YF R P I
Sbjct: 688 ATQDEDLIHKISNGRKKAKNGIYCLLFGGGDEKFAKTIKVKTTDEGARIKQTYFTRLPKI 747

Query: 843 HEYIEKTKNFV----RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
              +++  +      +  G V            I+   + +   +    +N  + GS + 
Sbjct: 748 KALLDRLADEFTATKKALGQVFGKSHPICKGGFISVAGAYLWCNSPHKILNYLLMGSESQ 807

Query: 899 ITRRAMISVHKSLEDHKL----------ATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948
           +   A+    + + +  L            ++L   HDE  +EVP E I  A ++I   M
Sbjct: 808 VQNEALNWACRQMLEKGLMKLNGRKPAIGARLLCSYHDENSWEVPNELIHEAKEVI-DQM 866

Query: 949 EKACLPKINLRVP--LKVNIK-VSNNWQEEN 976
                  + L +P  L      V  +W + +
Sbjct: 867 YGTASKTLGL-LPDTLVTGTGKVGKSWLDVH 896


>gi|254550635|ref|ZP_05141082.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 71

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           LLQ+HDEL+FE+   E      ++   M  A      L VPL+V++    +W 
Sbjct: 19  LLQVHDELLFEIAPGERERVEALVRDKMGGA----YPLDVPLEVSVGYGRSWD 67


>gi|109082314|ref|XP_001092360.1| PREDICTED: DNA polymerase subunit gamma-1 [Macaca mulatta]
          Length = 1228

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 115/381 (30%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 782  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 841

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 842  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 901

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 902  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKVFNYGRIYGAGQPFA 951

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 952  ERLLMQFNHRLTQQEAAEKAQQMYAITKGLRWYRLSDEGEWLVRELHLPVDRTEGGWISL 1011

Query: 846  --IEKTKNFVRQ---------------NGYVETIFGRRI---------HYDEINSP---- 875
              + K +    +                G  E+    ++             +       
Sbjct: 1012 QDLRKVQREAARKSHRKKWEVIAERAWKGGTESEMFNKLESIATSDIPRTPVLGCRISRA 1071

Query: 876  --KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               S+++     + +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1072 LEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1131

Query: 934  EEEITTAS------QIIVHSM 948
            EE+   A+       ++   M
Sbjct: 1132 EEDRYRAALALQITNLLTRCM 1152


>gi|296226151|ref|XP_002758779.1| PREDICTED: DNA polymerase theta-like [Callithrix jacchus]
          Length = 66

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
           +LQ+HDEL++EV EE++   +QI+ + ME A    + L V LK+ +K+  +W E
Sbjct: 11  ILQLHDELLYEVAEEDVVQVAQIVKNEMESA----VKLSVKLKLKVKIGASWGE 60


>gi|156845450|ref|XP_001645616.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
           70294]
 gi|317376167|sp|A7TJ59|FEN1_VANPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|156116281|gb|EDO17758.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 377

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 97/302 (32%), Gaps = 55/302 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + + G   M ++ L+         +   +FD      ++       A R + 
Sbjct: 55  TNEAGETTSHLMG---MFYRTLRMIDNGIKPCY---VFDGKPPVLKSHELSKRTARREET 108

Query: 88  PEMLLP---QLPLVRL-----------------ATQAFGIPAIEIQGFEADDIIATYTYI 127
            + L     Q   ++                    +  GIP I     EA+   A     
Sbjct: 109 EKKLQEATDQAEKMKQERRLVKVSKEHNDEAKQLLELMGIPYITAPC-EAESQCAELAKC 167

Query: 128 AEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180
                  V    S D D +   +P    + T  E       +ID E V+K   +  E+ V
Sbjct: 168 G-----KVYAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIHEIDTELVLKGLDLTLEQFV 222

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA--SRIKQKKRRENILEYAE 238
            L  + G   D    I G+G  TA  L++EYG+LE I+          K +  N   Y +
Sbjct: 223 DLGIMLG--CDYCDSIKGVGPVTALKLIKEYGSLEKIIEYIESDSSNSKWKIPNDWPYKD 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATTY 292
               +R+L  L+ DV I      L  +  N   LI F               I R+    
Sbjct: 281 ----AREL-FLKPDV-INGNEVELKWQPPNEKGLIDFLCGEKKFSEERVKSGIERLKKGL 334

Query: 293 DC 294
             
Sbjct: 335 KS 336


>gi|321252611|ref|XP_003192466.1| gamma DNA-directed DNA polymerase [Cryptococcus gattii WM276]
 gi|317458934|gb|ADV20679.1| Gamma DNA-directed DNA polymerase, putative [Cryptococcus gattii
            WM276]
          Length = 1429

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 90/294 (30%), Gaps = 47/294 (15%)

Query: 686  DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
            D +  + ++    +        T+T R         +   K  +G +++    +PP   +
Sbjct: 1007 DQMVVYRDQEFGMILPQVITMGTVTRRAVEATWLTASNAKKNRVGSELKAMVRAPPGYSI 1066

Query: 746  ISADYSQIELRILAHIA----KITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKV 793
            + AD    EL I + +      +     +             D+H   A  I G+     
Sbjct: 1067 VGADVDSEELWISSVMGDSQFGMHGATAIGWMTLEGNKSAGTDLHSKTA-NILGI----- 1120

Query: 794  SPQMRRHAKTINFSIIYGISPFR-----LATQLRIPRSEAADYIKRYFHRFPGIHE---- 844
                R  AK  N+S IYG          L    ++ +  A       +    G       
Sbjct: 1121 ---SRDAAKVFNYSRIYGAGKKHAVQLLLQGDSKLTKETAGKLADNLYKSTKGAKAVRAR 1177

Query: 845  -----------------YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
                             Y+  T   +  +    T          +             + 
Sbjct: 1178 NLPLASLPSLWHGGSESYLFNTLEAIALSDRPTTPALGCGVTRALRKSYLDENASYLPSR 1237

Query: 888  INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
            IN  +Q S  D     ++S+   ++ + +  + LL +HDE+ +   EE+   A+
Sbjct: 1238 INWVVQSSGVDYLHLLIVSMEYLIKKYDIQARYLLSVHDEVRYLAKEEDRYRAA 1291


>gi|77917938|ref|YP_355753.1| RNase D [Pelobacter carbinolicus DSM 2380]
 gi|77544021|gb|ABA87583.1| RNase D [Pelobacter carbinolicus DSM 2380]
          Length = 375

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 95/250 (38%), Gaps = 34/250 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            +V+   I +  Q+L      +  +  D++ ++  K   + IST  +          +  
Sbjct: 6   ILVDDVSIARLAQELRDEAVIAVDLEADSLHSYQEKVCLLQISTSTR--------TVLVD 57

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
            L+V              E L+ L     +    KI H   YD   L R + I ++G  D
Sbjct: 58  PLAV--------------EDLAALAPVLADPTIRKIFHAADYDIRCLFRDFRIEVQGLFD 103

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            M+   +L  G     +A +  K+L     E+ K  + +    +  +  +  +A+E++  
Sbjct: 104 TMIACQML--GEKRVGLADVLAKYLDV---ELDKRYQRADWSKRPLEEGMILYAMEDTCH 158

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG---IQIDQDLL--KQVSAEIS 603
           + +L  +L  +L     L   E  +  ++  V   E  G   +++    L  ++  A + 
Sbjct: 159 LHRLTEILEGRLRDMGRLSWAEE-EFALLQKVRHSENNGPLFMRVKGAGLLERKQLAVLE 217

Query: 604 KNLLSLEENI 613
           + L   +E  
Sbjct: 218 QLLQWRDEEA 227


>gi|330914981|ref|XP_003296859.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
 gi|311330789|gb|EFQ95031.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
          Length = 342

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 19/198 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   +  GIP I     EA+   A         G  V    S D D +   +P    + 
Sbjct: 88  CQRLLKLMGIPYIVAP-TEAEAQCAALAR-----GGKVYAAASEDMDTLTFDTPILLRHL 141

Query: 157 TVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E++      I ++ V++   +  ++ + L  L G   D +  I GIG  TA  L++E
Sbjct: 142 TFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLG--CDYLDPIKGIGPSTALKLIRE 199

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           + +LE I+ +      KK    I +    A  +R L +     P   P      E  +  
Sbjct: 200 HNDLEGIVEHIKSQTSKKLT--IPDDWPFAD-ARLLFLEPDVRPADDPECDFKWEAPDVE 256

Query: 271 RLISFL-KALEFTKLINR 287
            L+ FL +   F +   R
Sbjct: 257 GLVKFLVEEKHFNEDRVR 274


>gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803]
 gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803]
          Length = 217

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 26/221 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           ++ +    +   Q+L      +    T  ++    +   + I   +              
Sbjct: 11  EVFDYDLPEDVCQQLLACKEVAVDTETMGLNPHRDRLCLVQICDPEGNVTA--------- 61

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
            L +   Q+              L +  E+    KI H  ++D   L   + I       
Sbjct: 62  -LRIAKGQEEAPN----------LTRLMEDPGITKIFHFARFDTAQLKHTFDIKTYPIFC 110

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSN 547
             + S +  +  S H + ++ Q+ +     E+ KS + S   +  + S+ Q  +A  +  
Sbjct: 111 TKIASKIARTYTSHHGLKTLVQELVGV---ELDKSSQCSDWGNAANLSKAQLAYAANDVR 167

Query: 548 VILQLWLLLRPKLIVEKLLHVYERL-DKPMIDVVSQMEITG 587
            ++ L   L   L  E  L + +R  +   + V   + + G
Sbjct: 168 YLIPLRHKLEKMLAREDRLRLAQRCFECLPVMVTLDLGMYG 208


>gi|119493310|ref|XP_001263845.1| Flap endonuclease, putative [Neosartorya fischeri NRRL 181]
 gi|317374917|sp|A1D8A4|FEN1_NEOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|119412005|gb|EAW21948.1| Flap endonuclease, putative [Neosartorya fischeri NRRL 181]
          Length = 395

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 141 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++  G+  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEQRKEPIQEIHLNRTLEGLGMDRKQFIDLCILLG--CDYLEPIPKVGPNTALKLIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E       +R+L +         P      E  +   
Sbjct: 254 GSLEKVVEAIENDPKKKY--VIPEDWPYQD-ARELFLHPDVREADHPECDFKWEAPDVEA 310

Query: 272 LISFL 276
           L+ FL
Sbjct: 311 LVEFL 315


>gi|303312977|ref|XP_003066500.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240106162|gb|EER24355.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 359

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 20/189 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   SP    + T
Sbjct: 105 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 159

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +E V++  G+  ++ V L  L G   D +  IP +G  TA  +++++
Sbjct: 160 FSEQRKEPIQEIHLERVLEGLGMDRKQFVDLCILLG--CDYVDPIPKVGPNTALKMIRDH 217

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           G+LE ++       +KK    I E    E A   R L       P   P      E  + 
Sbjct: 218 GSLEKVVEAMENDPKKKYT--IPEDWPYEQA---RDLFFEPDVRPADHPECDFKWESPDV 272

Query: 270 PRLISFLKA 278
             L+ FL  
Sbjct: 273 EGLVKFLVE 281


>gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C]
          Length = 686

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 27/214 (12%)

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK------ 732
           K              +      T     +    R A  +   +N+ +  D+         
Sbjct: 314 KSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLKHRNLDLIIDIWGDPITLLS 373

Query: 733 --IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790
             +R  FI+ P KK +  D+S IE  +LA +A+     +VF     I+ M A++I GV  
Sbjct: 374 GCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVFRTHGKIYEMSASKISGVPF 433

Query: 791 EKV----------SPQMRRHAKTINFSIIYGISPFR----LATQLRIPRSEAADYIKRYF 836
           E++           P  +   K    +  YG          A +           I  + 
Sbjct: 434 EEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFGAEEHFEDDDAMKKAILGWR 493

Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
              P I E+        R++ Y  T    R +Y 
Sbjct: 494 DASPEIVEFWGGQY---RRDPY--TRKWVREYYG 522


>gi|78042574|ref|NP_001030285.1| flap endonuclease 1 [Bos taurus]
 gi|61553249|gb|AAX46374.1| flap structure-specific endonuclease 1 [Bos taurus]
          Length = 380

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   SP    + T
Sbjct: 141 CKHLLSLMGIPYLDAPS-EAEASCAALVK----AGKVYAAATEDMDCLTFGSPVLMRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  ++++ G+  E+ V L  L G   D    I GIG K A  L+Q++
Sbjct: 196 ASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAMDLIQKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+      K       + + A+   L  ++        +      L   + N   
Sbjct: 254 KSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEV--------LDPESVELKWSEPNEKE 305

Query: 272 LISF------LKALEFTKLINRVATT 291
           LI F               + R++ +
Sbjct: 306 LIKFMCGEKQFSEERIRSGVRRLSKS 331


>gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018]
          Length = 205

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 29/207 (14%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L      +    T  +D    K   I I   ++              + +    +S  KN
Sbjct: 20  LNNCKYIAIDTETTGLDPLKDKLCLIQICAKEK--------------IFLIKYNNSNQKN 65

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGI-SMRGFEDIMLMSYVLDSGRS 501
            +            +    +KI H+  +D   L     I ++       + + +L+    
Sbjct: 66  LIG---------ILQCSKIIKIFHHANFDLRFLMKNLKIYNINNVVCTKIAAKLLNGIEI 116

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            + +  + +K+L+    +  K +KS+   + ++  Q+ ++A  +   + +LW  L+ +LI
Sbjct: 117 ENSLKKLLRKYLNINIDK--KLQKSNWSAENLTKEQI-QYATYDVIYLEKLWRALKAELI 173

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGI 588
              L  + E      +   + +   GI
Sbjct: 174 KANLYSLAEEC-FKYLPTNAILHNRGI 199


>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
 gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
          Length = 381

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 87/253 (34%), Gaps = 32/253 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I     +++   +L +    +  +  D+M  +  K   I  +              I 
Sbjct: 9   EIITTVDGVRRLADRLGSEPIVACDLEADSMHHYQEKVCLIQFAVPGYA--------AIV 60

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
             L+                 +S L   F N    K+ H   YD   LHR +GI +    
Sbjct: 61  DPLAAPD--------------ISPLAPLFANAAIRKVFHGADYDIRSLHRDFGIEVNNLF 106

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D M+   +L  G     +A+  +K       E+ K  + +    +     + E+A++++ 
Sbjct: 107 DTMIACQLL--GEREFGLAAQLRKRFGV---ELDKQYQRADWSRRPLTVGMIEYAVKDTT 161

Query: 548 VILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
           ++++L+  L  +L  +     V E  +      V++       +     K  S    + L
Sbjct: 162 LLIELYRQLVAELEEKGRRGWVEEECELLSRVRVAERGDEPFFL---RFKGASRMDGRTL 218

Query: 607 LSLEENIYDLSGE 619
             LEE +    G 
Sbjct: 219 AVLEELLLFRDGR 231


>gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
 gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
          Length = 207

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 24/181 (13%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + +    T  ++    +   + +ST D   D     +     +                 
Sbjct: 22  AVAIDTETLGLNPHRDRLCVVQLSTGDGTADVVQIPQAGPEPV----------------- 64

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LK+   +   LKI H  ++D  VL+R  G+         + S +  +    H +  
Sbjct: 65  ---VLKRVLADPGILKIFHFARFDVAVLYRALGVMPSPVYCTKIASKLARTYTDRHGLKD 121

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           + ++ +     ++ K ++SS    +       ++A  +   +      L   L  E    
Sbjct: 122 VVRELVGV---DLSKQQQSSDWGAETLSQAQLDYAASDVLHLHAARERLDAMLAREGRTD 178

Query: 568 V 568
           +
Sbjct: 179 L 179


>gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
 gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
          Length = 838

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 115/363 (31%), Gaps = 61/363 (16%)

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +    ++ ++  ++      L L L P+L  ++L             +   +   G + D
Sbjct: 221 EEDLHRLWDYCKQDVFAEHALSLSL-PELSEQELETW---------KMDQWLNWRGARFD 270

Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651
             + KQ  +  S+    L   +  L+G   + +    + + L  +               
Sbjct: 271 LTMAKQALSMASEWRKRLNSILEALTGIT-SATKRAAVKEWLVEEEDLDLPDTAADTLKH 329

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
               + E+++     +++ +   R ++K  +   +++ +   +  +R           TG
Sbjct: 330 Y--LENEELSARARRVLEIV---RDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAGTG 384

Query: 712 RLASLEPNLQNIPIKT------------------------------DLGQKIRRAFISPP 741
           R A     + N P +                                L   +R A ++  
Sbjct: 385 RWAGKGIQVHNFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEE 444

Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG------VNIEKVSP 795
            ++L+ ADY+ IE R +   A       VF    DI+  +A  I+G      +  +   P
Sbjct: 445 GRELMVADYAAIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHP 504

Query: 796 QM------RRHAKTINFSIIYGISPFRL---ATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
                   R+  K     + YG+          +  I  S A         +     E++
Sbjct: 505 DYTLHSGCRQFGKQAILGLGYGMGYMTFLLTCRKYGITFSRAEVLRIMGPEKLDKTEEWV 564

Query: 847 EKT 849
            K 
Sbjct: 565 RKQ 567



 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 12/114 (10%)

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           +  + ET    R    +  + K           +    Q  A DI   AM++  K     
Sbjct: 727 KTSWGETKPALRYMSVDGVTRKWVRTATYGGKIVENITQAVARDIMAEAMLNSVK----E 782

Query: 915 KLATKMLLQIHDELVFEVPEE--EITTASQIIVHSMEKACLPKINLRVPLKVNI 966
                 ++ +HDELV EV E+  ++     ++        LP      P+    
Sbjct: 783 GCPYDPIMSVHDELVCEVDEDKGDLEEFETLMSD------LPIWAAGCPIVAEA 830


>gi|17231283|ref|NP_487831.1| ribonuclease D [Nostoc sp. PCC 7120]
 gi|17132925|dbj|BAB75490.1| ribonuclease D [Nostoc sp. PCC 7120]
          Length = 209

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 66/204 (32%), Gaps = 25/204 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       V +     + +    T  +     +   I +   + K       +     
Sbjct: 8   VGDRDLSDATVAQYLQSEAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIAQ----- 62

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDI 489
                           +     LKK  E  + LK+ H  ++D   +LH   I ++     
Sbjct: 63  ---------------GQTAAPNLKKLLEATNVLKVFHFARFDVATLLHHLDIHVQPIFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +  + H +  +  +     + E+ KS + S   +  + ++ Q  +A  +   
Sbjct: 108 KIASKLARTYTNRHGLKDLVHE---LEQVELDKSAQGSDWGNAANLTEAQLSYAANDVRY 164

Query: 549 ILQLWLLLRPKLIVEKLLHVYERL 572
           +L     L   L  E+   + ++ 
Sbjct: 165 LLSAQQKLVAMLKREERWELAQQC 188


>gi|168014475|ref|XP_001759777.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|317374864|sp|A9S0B8|FEN11_PHYPA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
           Full=Flap structure-specific endonuclease 1-A
 gi|162688907|gb|EDQ75281.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 394

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 22/201 (10%)

Query: 85  PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDL 144
            K  ++        R   +  G+P +E    EA+   A+      ++ FAV   S D D 
Sbjct: 129 KKTVKVTKQHNEDCRKLLRLMGVPVVEAPS-EAEAECASLCK--AEKVFAV--ASEDMDS 183

Query: 145 MQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
           +   S     +      +       DI  V++  G+  ++ V L  L G   D    I G
Sbjct: 184 LTYGSTRFLRHLMEPTSRKLPVLEFDIAKVLEGLGLNMDQFVDLCILCG--CDYCDTIRG 241

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK-LVMLRTDVPITI 257
           IG +TA  +++++G+LE +L N ++ + +        Y E  RL ++ LV     VP   
Sbjct: 242 IGPQTALKMIRQHGSLEIVLENLNKDRYQVPDPW--PYQEARRLFKEPLVTPPEKVP--- 296

Query: 258 PLEHLILEDCNGPRLISFLKA 278
                     +   L   L  
Sbjct: 297 ---EFKWTAPDTEGLRQLLVE 314


>gi|320036635|gb|EFW18574.1| flap endonuclease [Coccidioides posadasii str. Silveira]
          Length = 395

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 20/189 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   SP    + T
Sbjct: 141 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +E V++  G+  ++ V L  L G   D +  IP +G  TA  +++++
Sbjct: 196 FSEQRKEPIQEIHLERVLEGLGMDRKQFVDLCILLG--CDYVDPIPKVGPNTALKMIRDH 253

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           G+LE ++       +KK    I E    E A   R L       P   P      E  + 
Sbjct: 254 GSLEKVVEAMENDPKKKYT--IPEDWPYEQA---RDLFFEPDVRPADHPECDFKWESPDV 308

Query: 270 PRLISFLKA 278
             L+ FL  
Sbjct: 309 EGLVKFLVE 317


>gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 204

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 67/203 (33%), Gaps = 25/203 (12%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            S +    T  ++    +   + +S  D   D       + I +    + +         
Sbjct: 18  DSVAIDTETMGLNPHRDRLCVVQLSNGDGSAD------VVQIPVGHSDAPN--------- 62

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                LKK   +    KI H  ++D   L+   G+  +      + S +  +    H + 
Sbjct: 63  -----LKKLLGDPAITKIFHFARFDLAALYNALGVMPQPVYCTKIASRLTRTYTDRHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            + ++ L     ++ K ++SS    +        +A  +   +  L   L   L  E   
Sbjct: 118 DLVREVLGV---DLSKQQQSSDWGAQSLSDAQLAYAASDVLHLHGLRTRLDAMLAREGRT 174

Query: 567 HVYERLDKPMIDVVSQMEITGIQ 589
            + +      +   ++++++G  
Sbjct: 175 ELAQAC-FDFLPTRAKLDLSGWA 196


>gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
 gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
          Length = 204

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 66/200 (33%), Gaps = 25/200 (12%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           S +    T  ++    +   + +S  D   D   ++     D                  
Sbjct: 19  SVAIDTETLGLNPHRDRLCVVQLSNGDGSADV-VQIPAGHTDAPN--------------- 62

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LKK   +    K+ H  ++D  VL H +G+  +      + S ++ +    H +  
Sbjct: 63  ----LKKLLGDPAITKLFHFARFDIAVLYHAFGVMAQPVYCTKIASKLVRTYTDRHGLKD 118

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           + ++ L     EI K ++SS             +A  +   +  L   L   L  E    
Sbjct: 119 LVREMLGV---EISKQQQSSDWGAASLSEAQLSYAASDVLHLHALRDKLDAMLAREDREP 175

Query: 568 VYERLDKPMIDVVSQMEITG 587
           + +      +   +++++ G
Sbjct: 176 LAKAC-FEFLPTRARLDLQG 194


>gi|154499208|ref|ZP_02037586.1| hypothetical protein BACCAP_03203 [Bacteroides capillosus ATCC
           29799]
 gi|150272048|gb|EDM99274.1| hypothetical protein BACCAP_03203 [Bacteroides capillosus ATCC
           29799]
          Length = 302

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 27/215 (12%)

Query: 1   MQK-ENHLFLVD------GSSFIYRAFYATPLLSRKHDG-----LPVNAIAGFCNMLWKL 48
           M++ +N L +VD        SF  R+F     +    +G     +P        +ML+ +
Sbjct: 1   MERNQNILHVVDMSPCIYAGSFNRRSFI-QGDVVNTGNGYRERNIPTGG----TSMLFNI 55

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIP 108
           L         +  A        T + E+Y DYK +R   P  +     +     +  G  
Sbjct: 56  LGQYMGTGPIAFVA----DRNPTIKKELYQDYKGSRTH-PNDVSIGKEVAEYILKDCGFT 110

Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDI 165
               +G+EADD+I T           + + + D DL  LV     +  T    K   +D 
Sbjct: 111 IYAEEGYEADDVIYTIVRQNRMRYDHIFVHTADSDLYILVRDNVSILPTSSKAKTVTMDN 170

Query: 166 EHVIKKWG--IPPEKMVCLQALTGDSIDNIPGIPG 198
                K G   P   +V  + L GD   ++P +P 
Sbjct: 171 YTYTCKKGKETPYNSVVFQKFLAGDPSKDLPPLPK 205


>gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 203

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                   E  G  +    T  ++    K   +  S  + +             L    +
Sbjct: 7   QDDLPNNFELEGDIAIDTETMGLNLHRDKLCLLQFSNGNGEAH-----------LVHFVN 55

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYV 495
           QD +  N         LK    ++   KI H  ++D   + +Y  I +       + S +
Sbjct: 56  QDYSAPN---------LKALLLDKTRCKIFHFARFDLAAIKKYLSIDLENIFCTKISSKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +   SH +  + ++ LS     I K ++SS        S+ +E+A ++   + QL  +
Sbjct: 107 VRTYTDSHGLKDLCRELLSIN---ISKQQQSSYWGTDNLSSEQKEYAAKDVLYLHQLKDI 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           L+  L+ E  L + + +    +   + +++ G
Sbjct: 164 LQKMLLRENRLELAQDI-FRFLPTRANLDLIG 194


>gi|78224579|ref|YP_386326.1| 3'-5' exonuclease [Geobacter metallireducens GS-15]
 gi|78195834|gb|ABB33601.1| 3'-5' exonuclease [Geobacter metallireducens GS-15]
          Length = 382

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 28/204 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P+   S   I     +++   +L      +  +  D+M  +  K   I  +         
Sbjct: 2   PVQPVSPEIITTPDGVRRLADRLSREPYVACDLEADSMHHYQEKVCLIQFTVPG------ 55

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
             +  I   L+V                L+ L   F N    K+ H   YD   LHR +G
Sbjct: 56  --LAAIVDPLAVAD--------------LAPLAPVFANPSIRKVFHGADYDIRSLHRDFG 99

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           I +    D M+    L  G     +A++ +K       E+ K  + +    +   + + E
Sbjct: 100 IEVNNLFDTMIACQFL--GEREFGLAAVLRKRFGV---ELDKQYQRADWSRRPLTAGMIE 154

Query: 541 HAIENSNVILQLWLLLRPKLIVEK 564
           +A +++ ++++L   L  +L  + 
Sbjct: 155 YAAKDTTLLIELCGRLEAELREKG 178


>gi|78185488|ref|YP_377923.1| 3'-5' exonuclease [Synechococcus sp. CC9902]
 gi|78169782|gb|ABB26879.1| 3'-5' exonuclease [Synechococcus sp. CC9902]
          Length = 214

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 78/218 (35%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      W ++   +   +       +     +   + I+      D   +V  + I 
Sbjct: 13  VFDGDLDASWTERYLQMPCLAVDTEAMGLIHGRDRLCLVQIA------DAQDRVACVRIA 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L   T+ +              L++ FE     K+ H  ++D   L     I+++     
Sbjct: 67  LGQSTAPN--------------LQRLFEAPSVEKVFHFARFDVAALAAGLDIAVQPLFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    +D+++D Q+  +A  +  
Sbjct: 113 KVGSRLGRTYTPRHGLKDLVMELVGV---ELDKGAQSSDWGRVDELTDVQLA-YAANDVR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E    + +R     I V+++++ 
Sbjct: 169 YLLPARNKLETMLRREGRWELAQRC-FACIPVMAELDR 205


>gi|320582300|gb|EFW96517.1| 5' to 3' exonuclease, 5' flap endonuclease [Pichia angusta DL-1]
          Length = 374

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 24/194 (12%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI-----AEKEGFAVTIISTDKDLMQ 146
             Q    +   +  GIP +     EA+   A          A  E         D    Q
Sbjct: 136 REQNEQAQHLLRLMGIPYVIAPC-EAEAQCAELARKGKVYAAASEDM-------DTLCYQ 187

Query: 147 ----LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
               L + T      +K ++     V++ +G+     V L  L G   D    I GIG  
Sbjct: 188 PPFFLRNVTAAESKKLKVDEFTTSAVLEGFGMDINTFVDLCILLG--CDYCETIKGIGPV 245

Query: 203 TAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
           TA  L++E+G++E I+         K +  + E       +R+L        +      L
Sbjct: 246 TAFKLIKEHGSIEKIIEFIEN--DPKCKYKVPENWPYNE-AREL--FLNPEVLNGDDIDL 300

Query: 263 ILEDCNGPRLISFL 276
              D +   LI F+
Sbjct: 301 KWTDPDLDGLIEFM 314


>gi|326804439|ref|YP_004327243.1| DNA polymerase [Pseudomonas phage PAK_P1]
 gi|290873852|gb|ADD65055.1| DNA polymerase [Pseudomonas phage PAK_P1]
          Length = 911

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 82/261 (31%), Gaps = 40/261 (15%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
           +  R+ T        T R+   +       I +  G ++R  F        I  D+  +E
Sbjct: 559 QDGRIPTPADTCGAATSRMKHRKV-ANVPRITSLYGAELRELFGVGDGFFQIGYDFDSLE 617

Query: 755 LRILAHIAKITPLYQVFENSL------DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
            R  +         + +  SL      D+H M+A  I  +   + +   R  AK + +  
Sbjct: 618 ARKESAYCDQYDPTKEYCKSLMMEKPFDVHTMMAKRISEIIGRQFN---RSPAKNVKYGC 674

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG--YVETIFGRR 866
            YG    ++A  +             ++     +    +        NG  Y+  + GRR
Sbjct: 675 TYGAQAGKVAKTIGADLQTGQLVFDAFWDAAFPLKALKDDLTKQWEANGKKYIIGVDGRR 734

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-------- 918
           +               +  A +N+  Q       +RAM+     LE   L          
Sbjct: 735 VPTR------------SAHAILNSLFQSGGVICAKRAMVIHDVLLEKEGLKVDFFKEDWK 782

Query: 919 -------KMLLQIHDELVFEV 932
                  +M+   HDE   EV
Sbjct: 783 NKPEFCQQMIAY-HDEAQLEV 802


>gi|189191944|ref|XP_001932311.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973917|gb|EDU41416.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 395

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 19/198 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   +  GIP I     EA+   A         G  V    S D D +   +P    + 
Sbjct: 141 CQRLLKLMGIPYIVAP-TEAEAQCAALAR-----GGKVYAAASEDMDTLTFDTPILLRHL 194

Query: 157 TVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E++      I ++ V++   +  ++ + L  L G   D +  I GIG  TA  L++E
Sbjct: 195 TFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLG--CDYLDPIKGIGPSTALKLIRE 252

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           + +LE ++ +      KK    I +    A  +R L +     P   P      E  +  
Sbjct: 253 HNDLEGVVEHIKSQSSKKLT--IPDDWPFAD-ARLLFLEPDVRPADDPECDFKWEAPDVE 309

Query: 271 RLISFL-KALEFTKLINR 287
            L+ FL +   F +   R
Sbjct: 310 GLVKFLVEEKHFNEDRVR 327


>gi|147904034|ref|NP_001081464.1| DNA polymerase subunit gamma-1 [Xenopus laevis]
 gi|2494179|sp|Q91684|DPOG1_XENLA RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit
 gi|1229142|gb|AAB17117.1| DNA polymerase gamma [Xenopus laevis]
          Length = 1200

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 99/324 (30%), Gaps = 91/324 (28%)

Query: 707  STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHI 761
             T+T R         +      +G +++     PP   LI AD    EL I      AH 
Sbjct: 818  GTITRRAVEPTWLTASNARADRVGSELKAMVQVPPGYHLIGADVDSQELWIAAILGEAHF 877

Query: 762  AKITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
            A I                +  D+H   A+ +            R HAK  N+  IYG  
Sbjct: 878  AGIHGCTAFGWMTLQGKKSSGTDLHSKTASTV---------GISREHAKVFNYGRIYGAG 928

Query: 814  -PFR----LATQLRIPRSEAADYIKRYFHRFPGIHEYI---------------------- 846
             PF     +    R+ + +AA+  K+ +    GI  YI                      
Sbjct: 929  QPFAERLLMQFNHRLTQEQAAEKAKQMYAVTKGIRRYILSKEGEWLVEELGISVERGEEN 988

Query: 847  -------EKTKNFV-RQNGYVETIFGRRIHYDEINSPKSS-------------------- 878
                    K +    +++     +  RRI      S   +                    
Sbjct: 989  SVNLQDLRKIQKDATKRSRRKWNLVSRRIWTGGTESQMFNKLETIAMSPSPKTPVLGCRI 1048

Query: 879  --------IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                    ++     + +N  +Q SA D     ++++    E + +  +  + IHDE+ +
Sbjct: 1049 SRALEPTAVKGEFITSRVNWVVQSSAVDYLHLMLVAMKWLFEAYDIDGRFCISIHDEVRY 1108

Query: 931  EVPEEE------ITTASQIIVHSM 948
             V  ++          + ++   M
Sbjct: 1109 LVHSKDRYRAALALQITNLLTRCM 1132


>gi|148234716|ref|NP_001080984.1| flap endonuclease 1-B [Xenopus laevis]
 gi|82071413|sp|P70054|FEN1B_XENLA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
           Full=Flap structure-specific endonuclease 1-B;
           Short=xFEN-1b
 gi|1549393|gb|AAB08478.1| XFEN1b [Xenopus laevis]
 gi|213623174|gb|AAI69390.1| Flap endonuclease 1 [Xenopus laevis]
 gi|213626408|gb|AAI69394.1| Flap endonuclease 1 [Xenopus laevis]
          Length = 382

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 21/185 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A         G      + D D +   +P    + T
Sbjct: 141 CKKLLSLMGIPYVDAPC-EAEATCAALVK----AGKVYAAATEDMDALTFGTPVLLRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  V +  GI  E+ V L  L G   D    I GIG K A  L++++
Sbjct: 196 ASEAKKLPIQEFHLNRVFQDIGINHEQFVDLCILLG--SDYCETIRGIGPKRAIDLIRQH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
             +E I+ N   +K+    EN L + E    +R+L        I   +  L   + +   
Sbjct: 254 KTIEEIIDNID-LKKYPIPENWL-HKE----ARQL--FLEPEVIDADITELKWTEPDEEG 305

Query: 272 LISFL 276
           L++F+
Sbjct: 306 LVAFM 310


>gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
 gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
          Length = 681

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 107/340 (31%), Gaps = 63/340 (18%)

Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP--KQLGDILFT-KLK 638
           ++ + G+Q+D +L +     I +    L     +L+  +   ++   K L  +L   ++ 
Sbjct: 171 RINMRGMQMDVELAEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVD 230

Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698
            P   K+   +        + +        + +    + +   S+   +L   ++   + 
Sbjct: 231 LPDMKKSTLERRINDPDLPDALR-------ELLAIRLEATMTSSSKYKTLLRGVSADGRL 283

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIK----------------------TDLGQK---- 732
                   +  TGR+A       N+P                        T+LG      
Sbjct: 284 RGLMQFCGAQRTGRVAHRLFQPGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKT 343

Query: 733 -----------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-- 773
                            +R   ++P  K+L  +D S IE R  A +A      Q F +  
Sbjct: 344 GCADLVFENVIGLTANVVRGTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFD 403

Query: 774 ---SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830
                D++++  A  FGV +E V   MR+  K +  ++ Y        T     + +   
Sbjct: 404 AGIGADLYKLAYARAFGVAVEAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDS 463

Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870
                F     +     +     R  G  E    +R    
Sbjct: 464 IRAAVFAALDTVDP---EIVREAR--GMWEWAVKKRRTLG 498


>gi|317374948|sp|Q0UZR3|FEN1_PHANO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 396

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 26/202 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            R   +  GIP I     EA+   AT        G  V    S D D +   +P    + 
Sbjct: 141 CRRLLKLMGIPFIIAP-TEAEAQCATLAR-----GGKVYAAASEDMDTLTFNTPILLRHL 194

Query: 157 TVKEEK------IDIEHVIKKWGIPPE----KMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           T  E++      I ++ V++  G+  E    + + L  L G   D +  I GIG  TA  
Sbjct: 195 TFSEQRKEPILEIHLDKVLE--GLEMEREQPQFIDLCILLG--CDYLDPIKGIGPSTALK 250

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L++++  LE ++ +     QKK    + E    A  +R+L +     P   P      E 
Sbjct: 251 LIRDHKTLEGVVAHIQS-DQKKLT--LPEDWPFAD-ARQLFLEPDVCPADAPECDFKWEA 306

Query: 267 CNGPRLISFL-KALEFTKLINR 287
            +   L+ FL +   F +   R
Sbjct: 307 PDIEGLVKFLVEEKHFNEDRVR 328


>gi|87201263|ref|YP_498520.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444]
 gi|87136944|gb|ABD27686.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444]
          Length = 205

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 24/215 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
             +   +     G+ +    T  +     +        +   D    +    F   S   
Sbjct: 6   HEEDLPEGALAPGAVAVDTETMGLITPRDRL-----CVVQISDGRGDEHLVRFSPGSAFA 60

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSY 494
           + +              LK    +   LK+ H  ++D   +  Y G+         + S 
Sbjct: 61  APN--------------LKAVLADPERLKLYHFARFDLAAIEHYLGVVAAPVFCTKIASK 106

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + ++ L    KEI K ++SS           QE+A  +   +  +  
Sbjct: 107 LVRTYTDRHGLKDLVRELLG---KEISKQQQSSDWGAPTLTDAQQEYAASDVRHLHAMHT 163

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +L  +L  E    + +      + + +++++ G  
Sbjct: 164 ILVERLEREGRTAMAQAC-FDFLPMRARLDLAGWA 197


>gi|254505241|ref|ZP_05117392.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
 gi|222441312|gb|EEE47991.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
          Length = 223

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 84/250 (33%), Gaps = 41/250 (16%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
           ++I SE+TP+   +  ++       +  +Y                    + +    T  
Sbjct: 4   ARIRSEKTPEGNGVMTIRYHKGDLPDLSAYET----------------ASAVAVDSETLG 47

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           ++    +   + +S  D                S    Q + G+          L   F 
Sbjct: 48  LNPHRDRLCVVQLSPGDG---------------SADVVQIARGQTEAPN-----LAALFT 87

Query: 459 NEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           +    KI H  ++D  VL  Y GI +       + S ++ +    H +  I ++ L    
Sbjct: 88  DAAKPKIFHFARFDVAVLRHYLGIHVTPVWCTKIASKLVRTYTDRHGLKDITRELLGV-- 145

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
            E+ K ++SS    +        +A  +   +  L   L   L  E+  ++ E      +
Sbjct: 146 -ELSKQQQSSDWAAETLSDAQLAYAASDVLHLHDLKAKLEMMLEREERTNIAEAC-FSFL 203

Query: 578 DVVSQMEITG 587
            V +++++ G
Sbjct: 204 PVRAELDLKG 213


>gi|310722239|ref|YP_003969063.1| RNaseH [Aeromonas phage phiAS4]
 gi|306021082|gb|ADM79617.1| RNaseH [Aeromonas phage phiAS4]
          Length = 304

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 66/174 (37%), Gaps = 27/174 (15%)

Query: 43  NMLWKLL--------QNSRKESIASHFAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLP 93
            ML  L+        +  + E   +   + FD  A   +R +I   YK NR    E    
Sbjct: 40  RMLRHLILDTVRNNVKKFKNEYPET--IIAFDDSANGYWRRDIAWYYKLNRKANKEESPW 97

Query: 94  QLPL----VRLATQAF-----GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDL 144
              L    +            G+  I++   EADDIIA       +EG  V I S+D D 
Sbjct: 98  DWELLFSIINKVVNEMLNIYPGVKMIKLDKTEADDIIAVLVKKFTEEGRCVMISSSDSDF 157

Query: 145 MQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
            QL        Y   +++      V  K+G P   +  ++ + GD+ D + GI 
Sbjct: 158 TQLHKYKGVKQYSPAQKK-----AVKPKYGSPKHDLF-VKLIKGDAKDGVSGIK 205


>gi|316931442|ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
 gi|315599156|gb|ADU41691.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
          Length = 211

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 74/201 (36%), Gaps = 27/201 (13%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           S +    T  +     +   + +S  D   D       + I L    + +          
Sbjct: 26  SVAIDTETMGLHPHRDRLCVVQLSNGDGSAD------VVQIPLGATDAPN---------- 69

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LKK   +   +KI H  ++D   L++ +G+  +      + S +  +    H +  
Sbjct: 70  ----LKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKD 125

Query: 508 IAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           + ++ L     ++ K ++SS    + +SD+Q+  +A  +   +  L   L   L  E   
Sbjct: 126 LVRELLGI---DLSKQQQSSDWGAESLSDAQLA-YAASDVLHLHALRDKLDTMLAREGRT 181

Query: 567 HVYERLDKPMIDVVSQMEITG 587
            +        + V +++++ G
Sbjct: 182 DLAAAC-FGFLPVRARLDLDG 201


>gi|317376212|sp|B2VTT3|FEN1_PYRTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 395

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 19/198 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   +  GIP I     EA+   A         G  V    S D D +   +P    + 
Sbjct: 141 CQRLLKLMGIPYIVAP-TEAEAQCAALAR-----GGKVYAAASEDMDTLTFDTPILLRHL 194

Query: 157 TVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E++      I ++ V++   +  ++ + L  L G   D +  I GIG  TA  L++E
Sbjct: 195 TFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLG--CDYLDPIKGIGPSTALKLIRE 252

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           + +LE ++ +      KK    I +    A  +R L +     P   P      E  +  
Sbjct: 253 HNDLEGVVEHIKSQSSKKLT--IPDDWPFAD-ARLLFLEPDVRPADDPECDFKWEAPDVE 309

Query: 271 RLISFL-KALEFTKLINR 287
            L+ FL +   F +   R
Sbjct: 310 GLVKFLVEEKHFNEDRVR 327


>gi|169599851|ref|XP_001793348.1| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
 gi|160705335|gb|EAT89482.2| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
          Length = 377

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 26/202 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            R   +  GIP I     EA+   AT        G  V    S D D +   +P    + 
Sbjct: 122 CRRLLKLMGIPFIIAP-TEAEAQCATLAR-----GGKVYAAASEDMDTLTFNTPILLRHL 175

Query: 157 TVKEEK------IDIEHVIKKWGIPPE----KMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           T  E++      I ++ V++  G+  E    + + L  L G   D +  I GIG  TA  
Sbjct: 176 TFSEQRKEPILEIHLDKVLE--GLEMEREQPQFIDLCILLG--CDYLDPIKGIGPSTALK 231

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L++++  LE ++ +     QKK    + E    A  +R+L +     P   P      E 
Sbjct: 232 LIRDHKTLEGVVAHIQS-DQKKLT--LPEDWPFAD-ARQLFLEPDVCPADAPECDFKWEA 287

Query: 267 CNGPRLISFL-KALEFTKLINR 287
            +   L+ FL +   F +   R
Sbjct: 288 PDIEGLVKFLVEEKHFNEDRVR 309


>gi|148251746|ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
 gi|146403919|gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
          Length = 204

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 26/185 (14%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            S +    T  ++    +   + +S  D   D   ++     D                 
Sbjct: 18  SSVAIDTETMGLNPHRDRLCVVQLSPGDGSADV-VQIPKGHTDAPN-------------- 62

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                LK    N    KI H  ++D   + H +G+  +      + S +  +    H + 
Sbjct: 63  -----LKALLANPAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            + ++ L+    ++ K ++SS    D +S+ Q+  +A  +   +  L   L   L  E  
Sbjct: 118 DLVRELLNV---DLSKQQQSSDWGADNLSEPQLA-YAASDVLHLHALREKLDVMLAREGR 173

Query: 566 LHVYE 570
           L + +
Sbjct: 174 LGLAQ 178


>gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
 gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
          Length = 204

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 75/218 (34%), Gaps = 28/218 (12%)

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
           T       + L      +       ++A       + +S+ D                  
Sbjct: 5   TLHKGDLPEGLSLGPVIAVDTEAMGLNAMRDNLTLVQVSSGDGTAHLVQLTRDYDCP--- 61

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLM 492
                              LK    +   LKI H  ++D +++ R  GI+        + 
Sbjct: 62  ------------------NLKALLTDPKVLKIFHFARFDVVMMKRWMGITCAPIWCTKIA 103

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQ 551
           S +  +    H +  +A++       ++ K+++SS    DK++D+Q+ ++A  +   + Q
Sbjct: 104 SRLARTYTDRHGLKDVAREVAGV---DMSKAQQSSDWGQDKLTDAQI-QYAASDVLYLHQ 159

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +   L   L  E  L + +      + + + +++ G  
Sbjct: 160 IKAGLEAMLEREGRLELAQAC-FDFLPIRADLDLAGWP 196


>gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
 gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
          Length = 204

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 24/183 (13%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           S +    T  +     +   + +S  D   D   ++     D                  
Sbjct: 19  SVAIDTETMGLHPHRDRLCVVQLSNGDGSADV-VQIPQGHSDAPN--------------- 62

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LKK   +   +KI H  ++D   L+  +G+  +      + S +  +    H +  
Sbjct: 63  ----LKKLLGDPTVVKIFHFARFDLAALYNAFGVMPQPVYCTKIASRLTRTYTDRHGLKD 118

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           + ++ L+    ++ K ++SS    +        +A  +   +  L   L   L  E    
Sbjct: 119 LVRELLNV---DLSKQQQSSDWGAETLSDAQLAYAASDVLHLHGLREKLDAMLARENRTD 175

Query: 568 VYE 570
           + +
Sbjct: 176 LAQ 178


>gi|291571594|dbj|BAI93866.1| ribonuclease D [Arthrospira platensis NIES-39]
          Length = 207

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 27/222 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       V +     + +    T  +  +  +   + I       D   +V  I I+
Sbjct: 6   VCDRDLSDSRVSEFMEAEALAIDTETMGLLPWRDRLCLVQIC------DPKGQVVAIRIE 59

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
                + +              LK   E  + LK+ H  ++D   L H  GI +      
Sbjct: 60  RGQREAPN--------------LKTLLETTNILKVFHFARFDVATLRHNLGIEVNPVFCT 105

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +    H +  +  +       E+ KS +SS   +  + S+ Q  +A  +   
Sbjct: 106 KIASKLARTYTGKHGLKDLIMELEGV---ELDKSSQSSDWGNAANLSENQLNYAANDVRY 162

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLD--KPMIDVVSQMEITGI 588
           +L     L   L  E+   +        P I  +  M+   I
Sbjct: 163 LLSAKDKLNQMLKREERWDLALDCFQCLPTIVTLDLMQFDDI 204


>gi|84994172|ref|XP_951808.1| 5'-3' exonuclease [Theileria annulata strain Ankara]
 gi|74952859|sp|Q4UFP0|FEN1_THEAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|65301969|emb|CAI74076.1| 5'-3' exonuclease, putative [Theileria annulata]
          Length = 506

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/410 (15%), Positives = 122/410 (29%), Gaps = 72/410 (17%)

Query: 8   FLVDGSSFIYR--------AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             +D S+ +Y+        ++++         G   + I G  N   KLL+   K     
Sbjct: 31  LAIDASAALYQFTIAIRDSSYFS---SLVNSKGESTSHIYGLMNRCSKLLEYGIKP---- 83

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ-----------------------LP 96
               +FD      +++     +  R +                                 
Sbjct: 84  --VFVFDSKPPELKSKTLDKRRQKREEAKTDFKKAISEGDKESAKKLVGRTVKVTKDMND 141

Query: 97  LVRLATQAFGIPAIEI----QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
             +   +  GIP IE     +   A  +     +    E     +         L     
Sbjct: 142 SAKKLLRLMGIPVIEALEEAEAQCAYLVTKNLCHFVASEDTDTLVFGG---WFLL--RNV 196

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                 K  K+D++ V+       ++ V    L G   D    + G+G KTA  L+++Y 
Sbjct: 197 TSSANKKIVKVDLQKVLDGLEFNFDQFVDFCILCG--CDYCDTLEGVGPKTAYSLVKKYQ 254

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL 272
           +LE I+    R K     E   E  +   LS K+               + +   +   L
Sbjct: 255 SLEEIV----RFKGGDYDE-FKEAKDY-FLSPKVN--------EYDENSVKMGTIDPEGL 300

Query: 273 ISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
             F             K I ++               L      NK  +++    + +T 
Sbjct: 301 TEFLVQENNFSKERVEKFIEKLLKFKTKKIQTSLLSFLTNPQPTNKSKSLDEGPKQSSTE 360

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN-DSYTKIVNTK 375
                ++ S + S + +  T      + ++  +    NN ++  KI N +
Sbjct: 361 DYKVNTNPSTKGSNVYTTDTNSTKDTKGIECTATTTNNNLENKVKIENEE 410


>gi|284053636|ref|ZP_06383846.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca]
          Length = 209

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 27/222 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       V +     + +    T  +  +  +   + I       D   +V  I I+
Sbjct: 8   VCDRDLSDSRVSEFMEAEALAIDTETMGLLPWRDRLCLVQIC------DPKGQVVAIRIE 61

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
                + +              LK   E  + LK+ H  ++D   L H  GI +      
Sbjct: 62  RGQREAPN--------------LKTLLETTNILKVFHFARFDVATLRHNLGIEVNPVFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +    H +  +  +       E+ KS +SS   +  + S+ Q  +A  +   
Sbjct: 108 KIASKLARTYTGKHGLKDLIMELEGV---ELDKSSQSSDWGNAANLSENQLNYAANDVRY 164

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLD--KPMIDVVSQMEITGI 588
           +L     L   L  E+   +        P I  +  M+   I
Sbjct: 165 LLSAKDKLNQMLKREERWDLALDCFQCLPTIVTLDLMQFDDI 206


>gi|300120156|emb|CBK19710.2| unnamed protein product [Blastocystis hominis]
          Length = 370

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 105/316 (33%), Gaps = 71/316 (22%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-------RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57
             +  +D S  IY++  A  + +          +G   + I G  +   KL+++  K   
Sbjct: 28  GRMIAIDASVMIYQSLVAIRMNNQFASVMLTNAEGEVTSHIQGILSKTIKLMEDGIKP-- 85

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL------PQLPL-------------- 97
                 +F+      +       K  R K  E L        Q  +              
Sbjct: 86  ----VFVFEGKPPEMKQNELERRKQLREKAEEELKDAKEAENQEEIEKLSKRTVHMEGGH 141

Query: 98  ---VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT-IISTDKDLMQLVSPTTC 153
               +   +  G+P I+    EA+   A            V  + S D D +   +P   
Sbjct: 142 INDCKELLRLMGVPVIDA-ASEAESQCAELAKK-----KKVWAMASEDMDSLTFGTPVLI 195

Query: 154 LYDTVKEE---------KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
            + T  +          ++D+  V++   +  ++ + L  L G   D   GI GIG   A
Sbjct: 196 RHLTKSQGAKKDAQSILEVDLAEVLEAMKLSMDEFIDLCILCG--CDYCDGIRGIGQVKA 253

Query: 205 ALLLQEYGNLENILINAS---RIKQKKRRENILEYAETARLSRK-LVMLRTDVPITIPLE 260
              +Q+Y  +E ++ N +   ++ +    +   E      L +  LV    ++ +     
Sbjct: 254 YQFIQKYRTIEKVIENLTDKYQVPENWPYQKARE------LFKNPLVTPAEEIEVKF--- 304

Query: 261 HLILEDCNGPRLISFL 276
                + +   L+ FL
Sbjct: 305 ----GEVDRKGLVEFL 316


>gi|241958594|ref|XP_002422016.1| structure-specific endonuclease, putative [Candida dubliniensis
           CD36]
 gi|317374881|sp|B9WLQ5|FEN1_CANDC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|223645361|emb|CAX40017.1| structure-specific endonuclease, putative [Candida dubliniensis
           CD36]
          Length = 372

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 31/197 (15%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSP 150
             Q    +   +  GIP ++    EA+   A         G  V    S D D +    P
Sbjct: 136 REQNEEAKKLLELMGIPCVDAPC-EAEAQCAELAR-----GGKVYAAASEDMDTLCYEPP 189

Query: 151 TTCLYDTVKE-EKIDIEHVIKK-----WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
               + T  E  K+ I+ +  K       +  E+ + L  L G   D    I GIG  TA
Sbjct: 190 FLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLG--CDYCESIKGIGQATA 247

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEY-----AETARLSRKLVMLRTDVPITIPL 259
             L++E+G+L+NI+     IK  K +  + E      A    ++ + V    ++      
Sbjct: 248 FKLIKEHGSLDNIVEW---IKNNKTKYTLPENWPYDEARQLFMNPE-VTNANEI------ 297

Query: 260 EHLILEDCNGPRLISFL 276
             L  ++ +   LI F+
Sbjct: 298 -SLKWKEPDVDGLIEFM 313


>gi|213406171|ref|XP_002173857.1| DNA polymerase gamma [Schizosaccharomyces japonicus yFS275]
 gi|212001904|gb|EEB07564.1| DNA polymerase gamma [Schizosaccharomyces japonicus yFS275]
          Length = 1059

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 94/293 (32%), Gaps = 55/293 (18%)

Query: 688 LPNHINKRTQR----VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           L  +I+KR  +    +        T+T R         +   K  LG +++    +P   
Sbjct: 637 LEQNIDKRQPKDLGLILPSIIPIGTITRRAVENTWLTASNAKKNRLGSELKAMIKAPKGY 696

Query: 744 KLISADYSQIELRILAHIAK-ITPLYQVFENSL-----------DIHRMVAAEIFGVNIE 791
             + AD    EL I + I      L+                  D+H   A +I GV   
Sbjct: 697 CFVGADVDSEELWIASLIGDSQFALHGATALGWMTLEGEKSEKTDLHSKSA-DILGVT-- 753

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHRFPGIHEYI 846
                 R  AK  N+  IYG         L+     +   +A       ++   G+ + I
Sbjct: 754 ------RDAAKIFNYGRIYGAGLKFTVQLLQQFNNSLTEEDAVKLATNLYNSTKGVSKRI 807

Query: 847 E-----------------------KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883
                                   K +     + Y  T        + + S     R+  
Sbjct: 808 RIEKNNGVKRENIWAGGTESFVFNKLEEMAEAH-YPRTPVLEAGITEALLSKNLPRRSY- 865

Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             + IN  IQ S  D     +IS+   L+   +  ++ + +HDE+ +  P EE
Sbjct: 866 MTSRINWAIQSSGVDYLHLLIISMEYLLKYFGIHARLAITVHDEIRYLTPWEE 918


>gi|322492842|emb|CBZ28120.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 395

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 25/193 (12%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ----- 146
             Q+   +   +  GIP I+    EA+   A      +       + + D D +      
Sbjct: 139 REQIDESKKLLRLMGIPVIQAPS-EAEAQCAELVKKGKAW----AVGTEDMDALTFGSTI 193

Query: 147 -LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
            L              +I ++ V++  G+  ++ V L  L G   D +P +PGIG + A 
Sbjct: 194 MLRHLNISDAKKRPVAEIHLDEVLQTTGLSMDQFVDLCILLG--CDYVPKVPGIGPQKAW 251

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE--HLI 263
             +Q YG++E+ L +    K              A    K        P     E   + 
Sbjct: 252 EGIQRYGSIESFLESLDTTKHPVP----------ADFYYKEARAFFQNPEVTRAEEIDIQ 301

Query: 264 LEDCNGPRLISFL 276
             + +   LI FL
Sbjct: 302 FSEPDEAGLIQFL 314


>gi|325842732|ref|ZP_08167767.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
 gi|325489532|gb|EGC91897.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
          Length = 232

 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 73/204 (35%), Gaps = 31/204 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L         I T  +D        IA+ + D +                          
Sbjct: 59  LNYSKIIGVDIETTGLDFLEDSIRLIAVYSEDFEY------------------------- 93

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSH 503
               E L  +K    +   LK+ H+ ++D   L + GI +  F D  +M+ +L++     
Sbjct: 94  --VGEDLEAVKTLLTDPSVLKVFHHSQFDVCFLKKAGIDVCTFTDTFIMNQILNNLPVFD 151

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            ++ +A+ +L    K + KS + +         +   + ++++    +L+  +   +I  
Sbjct: 152 SLSRLAKVYLG---KSLDKSLQHADNWQSDLTQEHYAYCLDDAKTTYELYQHMFDLIINR 208

Query: 564 KLLHVYERLDKPMIDVVSQMEITG 587
            L   Y R +   +  + ++ + G
Sbjct: 209 YLYPRYRR-EIETLPAIVELTLNG 231


>gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease [polymorphum gilvum SL003B-26A1]
 gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1]
          Length = 206

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 24/196 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I + K     +   +   + +    T  ++    +   + +S  D   D          
Sbjct: 2   TIRHHKTDLPDLSAYDAAQAVAVDTETLGLNPHRDRLCVVQLSPGDGTADV--------- 52

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFED 488
                       +    +     L +   +   +KI H  ++D  VL H  GI +     
Sbjct: 53  -----------VQIARGQRAAPNLARLLTDPAKMKIFHFARFDLAVLRHNLGIEVAPVWC 101

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + S ++ +    H +  I ++ L     ++ K ++SS    +        +A  +   
Sbjct: 102 TKIASKLVRTYTDRHGLKDITRELLGV---DLSKQQQSSDWAAETLTDAQLAYAASDVLH 158

Query: 549 ILQLWLLLRPKLIVEK 564
           +  L   L   L  E+
Sbjct: 159 LHALREKLAAMLEREE 174


>gi|295662156|ref|XP_002791632.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb01]
 gi|226279758|gb|EEH35324.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb01]
          Length = 1178

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 101/293 (34%), Gaps = 38/293 (12%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    +++ 
Sbjct: 834  KKDRRDADEVSHIMVSECQELLRLFGLPYITAP-MEAEAQCAELVSLGLVDG----VVTD 888

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +  +   +E      + K++ +   K++    L G   D   G
Sbjct: 889  DSDIF--LFGGTRVYKNMFNQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLG--SDYTEG 944

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQKKR---------RENILEYAETARL---- 242
            IPG+G  TA  +L E+  LE+     S+++   +         R+   + A    L    
Sbjct: 945  IPGVGPVTALEILTEFSTLEDFRDWWSQVQMGAQLPDDSHSAFRKKFKKNATKLFLPPGF 1004

Query: 243  --SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              SR +     +  +            +   L  F        L+  V  T +     + 
Sbjct: 1005 PDSR-VDTAYLEPEVDSDPSAFQWGVPDLNALRQF--------LMATVGWTQERTDEVLV 1055

Query: 301  PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            PV+ D+N  E +G                 F+       K   E+   +L  +
Sbjct: 1056 PVIRDMNRREQEGTQSNITNFFQGPQGAGAFAPHRRPDRKSRMEKAFSRLRYQ 1108


>gi|213585209|ref|ZP_03367035.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 136

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 50/171 (29%), Gaps = 42/171 (24%)

Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326
                L+   K  EF +    V       A   +P                         
Sbjct: 1   PIADELLGLFKKYEFKRWTADVEAGKWLQAKGAKP------------------------- 35

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
                           + +  + + ++         ++ ++Y  I++   ++ W++KL+ 
Sbjct: 36  ----------------AAKPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKK 79

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
               +F   TD++D   +  + ++ +           V   ++D     S+
Sbjct: 80  APVFAFDTETDSLDNIAANLVGLSFAIEPGV-AAYVPVAHDYLDAPDQISR 129


>gi|320586879|gb|EFW99542.1| DNA polymerase gamma [Grosmannia clavigera kw1407]
          Length = 1168

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 93/297 (31%), Gaps = 46/297 (15%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
               +        T+T R         +   K  +G +++    +PP    + AD    E
Sbjct: 663 DQGFILPQVIPMGTVTRRAVENTWLTASNAKKNRVGSELKAMVKAPPGYSFVGADVDSEE 722

Query: 755 LRILAHIAKITPLYQVFE------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           L I + +   T                      D+H   A+ I G+         R  AK
Sbjct: 723 LWIASVVGDATFGLHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT--------RNDAK 773

Query: 803 TINFSIIYGIS---PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ---N 856
             N+  IYG       +L  Q     SEA + +      +          K   ++    
Sbjct: 774 VFNYGRIYGAGLRFAAQLLRQFNPSLSEA-ETVSIATKLYLATKGTRTNRKALCKRPFWR 832

Query: 857 GYVETI---------FGRRIHYDEINS-------PKSSIRNINERAAINAPIQGSAADIT 900
           G  E+             R     + +        +   +     + IN  IQ S  D  
Sbjct: 833 GGTESFVFNRLEEFAEQERPRTPVLGAGITEALMGRFISKGGYLTSRINWAIQSSGQDYL 892

Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEV--PEEEITTASQIIVHSMEKACLPK 955
              ++++   +   K+  ++ + +HDE+ + V   ++  T  +  + +   +A   +
Sbjct: 893 HLLIVAMDYLIRRFKIDARLAITVHDEIRYLVGNHDKYRTAMALQVANVWTRAMFSE 949


>gi|226323296|ref|ZP_03798814.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
 gi|225208486|gb|EEG90840.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
          Length = 162

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK--VSPQMRRHAKTINFSIIYGIS 813
           R++AH+A+ +   +VF+N  DI+   A+++F V +EK  ++  +R+  K  + ++ YG S
Sbjct: 35  RVIAHLARESWRAEVFKNGGDIYCTSASQMFHVPVEKHGINGHLRQKGKIADLALGYGGS 94

Query: 814 PFRL----ATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848
              L    A ++ +   E    +  +    P I      
Sbjct: 95  VGALKAMGALEMGLTEDELQPLVDAWRQSNPNIVALWWD 133


>gi|313892502|ref|ZP_07826091.1| phage exonuclease family protein [Dialister microaerophilus UPII
           345-E]
 gi|313119081|gb|EFR42284.1| phage exonuclease family protein [Dialister microaerophilus UPII
           345-E]
          Length = 262

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 52/156 (33%), Gaps = 23/156 (14%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANR--PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
             + F  P   FR EI   YK  R     P         +                 EAD
Sbjct: 74  IIICFSDPEKNFRKEILTSYKGTRSGKLKPTSYGATRTWIEE-----RYNCCCYPTLEAD 128

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPP 176
           D +         +G  V I S DKD   +       Y+ ++ E   I  E   + + +  
Sbjct: 129 DCVGLLANKY--KGHEVHI-SGDKDFKTIAG---IFYNHLQGEMYTITEEEAYRNFLV-- 180

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                 Q L GD+ DN  G P IG K+A      YG
Sbjct: 181 ------QTLAGDTADNYKGCPRIGVKSANKAFDSYG 210


>gi|147771801|emb|CAN71326.1| hypothetical protein VITISV_007135 [Vitis vinifera]
          Length = 119

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 8/119 (6%)

Query: 186 TGDSIDNIPGI----PGIGYKTAALLLQEYGNLENILINAS--RIKQKKRRENILEYAET 239
            GD +D +PGI    PG G KTA  LL+++G+LEN+L  A+   + ++  +  + +YA+ 
Sbjct: 1   MGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRQYAQNALTKYADF 60

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP--RLISFLKALEFTKLINRVATTYDCDA 296
            R + +++ LR DV + +  E L   D       L +F K L  T+ +    T++  D 
Sbjct: 61  LRRNYEILSLRRDVDVQLEEEWLFDRDSRNDSVVLSNFFKLLGETQKLTNQNTSHSSDG 119


>gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T]
          Length = 714

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 14/132 (10%)

Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788
           L   +R  FI+ P KK +  D+S IE  +LA +A+     +VF     I+ M A++I GV
Sbjct: 462 LSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRLEVFRTHGKIYEMSASKISGV 521

Query: 789 NIEKV----------SPQMRRHAKTINFSIIYGISPFR----LATQLRIPRSEAADYIKR 834
             E++           P  +   K    +  YG          A        E    I  
Sbjct: 522 PFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWKAFGAEAHFADDDEMKKAILG 581

Query: 835 YFHRFPGIHEYI 846
           +    P I E+ 
Sbjct: 582 WRDASPEIVEFW 593


>gi|296411549|ref|XP_002835493.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629277|emb|CAZ79650.1| unnamed protein product [Tuber melanosporum]
          Length = 481

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 28/188 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP +E    EA+   A            V   ++D D+  L   T  L   
Sbjct: 236 CKRLLTCMGIPYVEAPC-EAEAQCAALAKAG-----KVYAAASD-DMDTLCFETPILLKK 288

Query: 158 VKEEKIDIEHVIKKW--------GIPPEKMVCLQALTG-DSIDNIPGIPGIGYKTAALLL 208
           +   ++  E V + +        G   ++ + L  L G D  D IP    +G  TA  L+
Sbjct: 289 LMLSEMKKEPVQEIYLDRAMQELGFTRDQFIDLCILLGCDYCDTIP---KVGPTTALKLI 345

Query: 209 QEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
           +E+ ++EN+L +   +  K        Y +    +R+L   +  +           E  +
Sbjct: 346 REHKSIENVLSH---LGPKYAVPKKWPYQD----AREL--FKNPLITDPDECEFKWEAPD 396

Query: 269 GPRLISFL 276
             +L++FL
Sbjct: 397 IDKLVAFL 404


>gi|82187497|sp|Q6TNU4|FEN1A_DANRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|37362214|gb|AAQ91235.1| flap structure-specific endonuclease 1 [Danio rerio]
 gi|47940409|gb|AAH71488.1| Fen1 protein [Danio rerio]
          Length = 380

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 89/279 (31%), Gaps = 52/279 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  DG   + + G   M ++ ++         +   +FD      ++      +  R   
Sbjct: 54  QNEDGETTSHLMG---MFYRTIRMLESGIKPVY---VFDGKPPQLKSGELEK-RVERRAE 106

Query: 88  PEMLLPQ------------------------LPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            E LL Q                            +      G+P IE    EA+   A 
Sbjct: 107 AEKLLAQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPC-EAEASCAA 165

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
                   G      + D D +   +     + T  E      ++     +++   +  +
Sbjct: 166 LVK----AGKVYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQ 221

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L  L G   D    I GIG K A  L++++G++E IL N    K     + + + A
Sbjct: 222 QFIDLCILLG--CDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWLYKEA 279

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
               L  ++V              L   + +   LI F+
Sbjct: 280 RGLFLEPEVV--------DGTSVDLKWNEPDEDGLIQFM 310


>gi|261601793|gb|ACX91396.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
          Length = 351

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 118/345 (34%), Gaps = 73/345 (21%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +DG + +Y+   A     R+ DG P         + ++G F   +  L +          
Sbjct: 28  IDGYNALYQFLAAI----RQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIY---- 79

Query: 61  FAVIFDYPAVTFRNEIYP---------DYKANRPKIP---EMLLPQLPLV---------- 98
              +FD      ++E            + K  R K     E L      +          
Sbjct: 80  ---VFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEE 136

Query: 99  -RLATQAFGIPAIEIQGFEADDIIA----TYTYIAEKEGFAVTIISTDKDLMQLVS---- 149
            +   +A GIP ++       +         ++ A  + +   +    + +  L      
Sbjct: 137 SKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKR 196

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P   +Y  +K E I+ E ++KK GI  E+++ +  L G   D  P GI GIG + A  
Sbjct: 197 KLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIG--TDYNPDGIRGIGPERALK 254

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           ++++YG +E  +     I +K    NI E      L+ ++V          P E L L +
Sbjct: 255 IIKKYGKIEKAME-YGEISKKDINFNIDEIR-GLFLNPQVVK---------PEEALDLNE 303

Query: 267 CNGPRLISF------LKALEFTKLINRVATTYDCDAANIEPVVLD 305
            NG  +I+                I R+               LD
Sbjct: 304 PNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLD 348


>gi|116668192|pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
          Length = 346

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 118/345 (34%), Gaps = 73/345 (21%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +DG + +Y+   A     R+ DG P         + ++G F   +  L +          
Sbjct: 23  IDGYNALYQFLAAI----RQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIY---- 74

Query: 61  FAVIFDYPAVTFRNEIYP---------DYKANRPKIP---EMLLPQLPLV---------- 98
              +FD      ++E            + K  R K     E L      +          
Sbjct: 75  ---VFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEE 131

Query: 99  -RLATQAFGIPAIEIQGFEADDIIA----TYTYIAEKEGFAVTIISTDKDLMQLVS---- 149
            +   +A GIP ++       +         ++ A  + +   +    + +  L      
Sbjct: 132 SKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKR 191

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P   +Y  +K E I+ E ++KK GI  E+++ +  L G   D  P GI GIG + A  
Sbjct: 192 KLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIG--TDYNPDGIRGIGPERALK 249

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           ++++YG +E  +     I +K    NI E      L+ ++V          P E L L +
Sbjct: 250 IIKKYGKIEKAME-YGEISKKDINFNIDEIR-GLFLNPQVVK---------PEEALDLNE 298

Query: 267 CNGPRLISF------LKALEFTKLINRVATTYDCDAANIEPVVLD 305
            NG  +I+                I R+               LD
Sbjct: 299 PNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLD 343


>gi|317374880|sp|C4YLS2|FEN1_CANAW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|238879915|gb|EEQ43553.1| structure-specific endonuclease RAD27 [Candida albicans WO-1]
          Length = 372

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 31/197 (15%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSP 150
             Q    +   Q  GIP ++    EA+   A         G  V    S D D +    P
Sbjct: 136 REQNEEAKKLLQLMGIPCVDAPC-EAEAQCAELAR-----GGKVYAAASEDMDTLCYEPP 189

Query: 151 TTCLYDTVKE-EKIDIEHVIKK-----WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
               + T  E  K+ I+ +  K       +  E+ + L  L G   D    I GIG  TA
Sbjct: 190 FLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLG--CDYCESIKGIGQATA 247

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEY-----AETARLSRKLVMLRTDVPITIPL 259
             L++E+G+L+NI+     IK  K +  + E      A    ++ + V   +++      
Sbjct: 248 FKLIKEHGSLDNIVEW---IKNNKTKYTLPENWPFDEARQLFMNPE-VTNASEI------ 297

Query: 260 EHLILEDCNGPRLISFL 276
             L  ++ +   LI F+
Sbjct: 298 -SLKWKEPDVDGLIEFM 313


>gi|68477053|ref|XP_717504.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
 gi|68477234|ref|XP_717410.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
 gi|74586103|sp|Q5A6K8|FEN1_CANAL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|46439119|gb|EAK98441.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
 gi|46439217|gb|EAK98538.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
          Length = 372

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSP 150
             Q    +   Q  GIP ++    EA+   A         G  V    S D D +    P
Sbjct: 136 REQNEEAKKLLQLMGIPCVDAPC-EAEAQCAELAR-----GGKVYAAASEDMDTLCYEPP 189

Query: 151 TTCLYDTVKE-EKIDIEHVIKK-----WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
               + T  E  K+ I+ +  K       +  E+ + L  L G   D    I GIG  TA
Sbjct: 190 FLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLG--CDYCESIKGIGQATA 247

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEY-----AETARLSRKLVMLRTDVPITIPL 259
             L++E+G+L+NI+     IK  K +  + E      A    ++ + V   +++      
Sbjct: 248 FKLIKEHGSLDNIVEW---IKNNKTKYTLPENWPYDEARQLFMNPE-VTNASEI------ 297

Query: 260 EHLILEDCNGPRLISFL 276
            +L  ++ +   LI F+
Sbjct: 298 -NLKWKEPDVDGLIEFM 313


>gi|94495607|ref|ZP_01302187.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58]
 gi|94424995|gb|EAT10016.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58]
          Length = 205

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 69/205 (33%), Gaps = 24/205 (11%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
             G  +    T  +     +        +   D    +    F   S + + +       
Sbjct: 16  APGPIAVDTETMGLITPRDRL-----CVVQISDGKGDEHLVRFNPGSDYAAPN------- 63

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHD 504
                  LK    +   LK+ H  ++D   L  Y GI         + S ++ +    H 
Sbjct: 64  -------LKAVLADPERLKLYHFGRFDIAALRHYLGIVAAPVYCTKIASRLVRTYTDRHG 116

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  + ++ L    ++I K ++SS     +     +++A  +   + QL   L  +L  E 
Sbjct: 117 LKELVRELLG---QDISKQQQSSDWGGPVLSDAQKDYAASDVRFLHQLKAELDKRLEREG 173

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQ 589
            + + +      +   +++++ G  
Sbjct: 174 RMELAQAC-FDFLPHRAELDLAGWP 197


>gi|326680088|ref|XP_001921130.2| PREDICTED: DNA polymerase subunit gamma-1-like [Danio rerio]
          Length = 1203

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 102/338 (30%), Gaps = 92/338 (27%)

Query: 694  KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
             +   +      A T+T R         +   K  +G +++     PP   L+ AD    
Sbjct: 796  GQYGAILPQVIPAGTVTRRAVEPTWLTASNARKDRVGSELKAMVQVPPAYHLVGADVDSQ 855

Query: 754  ELRIL-----AHIAKITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
            EL I      AH A +                   D+H   A        + V    R H
Sbjct: 856  ELWIAAMLGEAHFAGMHGCTAFGWMTLQGKKSQGTDLHSRTA--------DAVGI-SREH 906

Query: 801  AKTINFSIIYGIS-PFR----LATQLRIPRSEAADYIKRYFHRFPGIHEY---------- 845
            AK  N+  IYG   PF     +    R+ + EAA   ++ +    G+  Y          
Sbjct: 907  AKVFNYGRIYGAGQPFAERLLMQFNHRLSQQEAAGKARQMYALTKGLRRYHLSEEGEWLL 966

Query: 846  -------------------IEKTKNFVRQN----------GYVETIFGRRIHYDEINSPK 876
                               + K      Q           G V T       ++++ S  
Sbjct: 967  QKLNVNVERAEDGSISLQDLRKISKVATQRGSKKKWNLTAGRVWTDGTESYMFNKLESIA 1026

Query: 877  SSIRNINE--------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
             S R                         + +N  +Q SA D     ++S+    E+H +
Sbjct: 1027 QSDRPATPVLNCRISRALEPSAVQEEFITSRVNWVVQSSAVDYLHLMLVSMRWLFEEHDI 1086

Query: 917  ATKMLLQIHDELVFEVPEEEITTAS------QIIVHSM 948
              +  + IHDE+ + V  E+   A+       ++   M
Sbjct: 1087 DGRFCISIHDEVRYLVTSEDRYRAALALQITNLLTRCM 1124


>gi|296804544|ref|XP_002843124.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
 gi|317374914|sp|C5FZT5|FEN1_NANOT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|238845726|gb|EEQ35388.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
          Length = 394

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A      +  G A    S D D +   +P    + T
Sbjct: 140 CKRLLKLMGIPYIDAP-TEAEAQCAVLAKEGKVFGAA----SEDMDTLCFAAPVLLRHLT 194

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++  G+   + V L  L G   D +  IP +G  TA  +++++
Sbjct: 195 FSEQRKEPILEIHLDKVLEGLGMEMTQFVDLCILLG--CDYLDPIPKVGPNTALKMIRDH 252

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G LE ++       +KK    I +     + +R L       P   P         +   
Sbjct: 253 GTLEKVVETIESDPKKKY--VIPDDWPYLQ-ARDLFFNPDVRPADAPECDFKWTAPDVEG 309

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 310 LVRFLVE 316


>gi|313126141|ref|YP_004036411.1| flap endonuclease 1 [Halogeometricum borinquense DSM 11551]
 gi|312292506|gb|ADQ66966.1| flap endonuclease 1 [Halogeometricum borinquense DSM 11551]
          Length = 326

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 24/180 (13%)

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
             +   +P IE    E +   +      + +     + S D D + L +P T    T K 
Sbjct: 140 LLERLDVPVIEAPA-EGEAQASYMAKQGDVD----YVGSEDYDTLLLGAPYTLRQLTSKG 194

Query: 161 --EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             E +D+E  +    +  E+++ +  L G   D   GI G+G KTA   ++E+G+L  +L
Sbjct: 195 DPELMDLEATLSDLDVTQEQLIDIAILCG--TDFNEGISGVGPKTALKEVKEHGDLWTVL 252

Query: 219 INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
                           +Y E A   R+L     D P+T   E       +     +++  
Sbjct: 253 EARD------------DYIENADRVREL---FRDPPVTDDYEFDTDLSPDLDAARAYVSE 297


>gi|302843818|ref|XP_002953450.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
 gi|300261209|gb|EFJ45423.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
          Length = 397

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 81/255 (31%), Gaps = 26/255 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD- 156
            +   +  G+P +E    EA+   A         G    + + D D +   +P    +  
Sbjct: 142 CKRLLRLMGVPVVEAPS-EAEAQCAEMAK----AGLVYGLATEDMDALTFGAPRVIRHLM 196

Query: 157 -----TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
                 V  ++ID    +++ G+  ++ + +  L G   D    I GIG   A  L++++
Sbjct: 197 APSSSNVPVQEIDRAVALQELGLDDDQFIDMCILMG--CDYCGTIRGIGAVRALQLIKKH 254

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G++E IL    + K          Y E+    +       +V     L  L     +   
Sbjct: 255 GSIEAILEELDKAKFPVPEP--FPYKESHEFFK-----NPEVTPAAELPQLKWSSPDEEG 307

Query: 272 LISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
           L+ F               ++R+                      N   A +T+      
Sbjct: 308 LVQFLVNEKNFSEQRVRAAVSRIKQHKGKANQGRMDTFFTALPKSNTDSAAKTKEPPAKE 367

Query: 326 IKTSQFSSLSDQTSK 340
            K  +    +   +K
Sbjct: 368 DKKRKGGPGAAPAAK 382


>gi|28380021|sp|Q980U8|FEN_SULSO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 349

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 118/345 (34%), Gaps = 73/345 (21%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +DG + +Y+   A     R+ DG P         + ++G F   +  L +          
Sbjct: 26  IDGYNALYQFLAAI----RQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIY---- 77

Query: 61  FAVIFDYPAVTFRNEIYP---------DYKANRPKIP---EMLLPQLPLV---------- 98
              +FD      ++E            + K  R K     E L      +          
Sbjct: 78  ---VFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEE 134

Query: 99  -RLATQAFGIPAIEIQGFEADDIIA----TYTYIAEKEGFAVTIISTDKDLMQLVS---- 149
            +   +A GIP ++       +         ++ A  + +   +    + +  L      
Sbjct: 135 SKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKR 194

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P   +Y  +K E I+ E ++KK GI  E+++ +  L G   D  P GI GIG + A  
Sbjct: 195 KLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIG--TDYNPDGIRGIGPERALK 252

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           ++++YG +E  +     I +K    NI E      L+ ++V          P E L L +
Sbjct: 253 IIKKYGKIEKAME-YGEISKKDINFNIDEIR-GLFLNPQVVK---------PEEALDLNE 301

Query: 267 CNGPRLISF------LKALEFTKLINRVATTYDCDAANIEPVVLD 305
            NG  +I+                I R+               LD
Sbjct: 302 PNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLD 346


>gi|46122277|ref|XP_385692.1| hypothetical protein FG05516.1 [Gibberella zeae PH-1]
          Length = 1124

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 105/357 (29%), Gaps = 57/357 (15%)

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
           F      S         +  A     I+  D  I   ++ + Q  ++        P    
Sbjct: 587 FESGMLSSEYTYAKEALEMNASCSYWISARDR-IKSQMVVYDQDLRVMRGSTRGKPK--K 643

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            +   +        T+T R         +   K  +G +++    +P     + AD    
Sbjct: 644 DKPGFILPQIIPMGTITRRAVENTWLTASNAKKNRVGSELKAMVKAPRGYCFVGADVDSE 703

Query: 754 ELRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           EL I A +           N               D+H   A+ I G+         R +
Sbjct: 704 ELWI-ASLVGDATFKLHGGNAVGFMTLEGTKSAGTDLHSRTAS-ILGIT--------RNN 753

Query: 801 AKTINFSIIYGISPFRLATQL-----RIPRSEAADYIKRYFHRFPGIHE-----YIE--- 847
           AK  N+  IYG      AT L      +   +  +   R +    G        Y     
Sbjct: 754 AKIFNYGRIYGAGLKFAATLLRQFNPNLSEKQTMETASRLYANTKGTKTNRKLLYKRPFW 813

Query: 848 ----------KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
                     K + F  Q+    T        + +       +     + IN  IQ S  
Sbjct: 814 RGGTESFVFNKLEEFAEQD-KARTPVLGAGITEALMGR-YISKGGYLTSRINWAIQSSGV 871

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE------ITTASQIIVHSM 948
           D     ++++   +    +  ++ + +HDE+ + V E++          + +   +M
Sbjct: 872 DYLHLLVVAMDYLIRRFNIDARVAITVHDEIRYLVTEKDKYRTALALQVANLWTRAM 928


>gi|297812863|ref|XP_002874315.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320152|gb|EFH50574.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 448

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 51/282 (18%)

Query: 25  LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVT-FRNEIYPDYKAN 83
            +     G   + + G  N   +LL+   K     +   +FD       R E+   Y + 
Sbjct: 52  EMLTNEAGEVTSHLQGMFNRTIRLLEAGIK---PVY---VFDGKPPELKRQELAKRY-SK 104

Query: 84  RPKIPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDI 120
           R      L   +                          +   +  G+P +E    EA+  
Sbjct: 105 RADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATS-EAEAQ 163

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT--TCLYDTVKEE----KIDIEHVIKKWGI 174
            A      +  G    + S D D +   +P     L D    +    + ++  ++++  +
Sbjct: 164 CAALCKSGKVYG----VASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQL 219

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             ++ + L  L+G   D    I GIG +TA  L++++G++E IL N ++ + +   E   
Sbjct: 220 TMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEW-- 275

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            Y E  +L ++      DV        +     +   ++ FL
Sbjct: 276 PYNEARKLFKE-----PDVITDEEQLDIKWTSPDEEGIVQFL 312


>gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
 gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
          Length = 204

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 72/201 (35%), Gaps = 27/201 (13%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           S +    T  +     +   + +S  D   D   ++     D                  
Sbjct: 19  SVAIDTETMGLHPHRDRLCVVQLSNGDGSADV-VQIPQGATDAPN--------------- 62

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LKK   +   +KI H  ++D   L++ +G+  +      + S +  +    H +  
Sbjct: 63  ----LKKLLGDPAVVKIFHFARFDLAALYKTFGVMPQPVYCTKIASRLTRTYTDRHGLKD 118

Query: 508 IAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           + ++ L     ++ K ++SS    D +SD+Q+  +A  +   +  L   L   L  E   
Sbjct: 119 LVRELLGI---DLSKQQQSSDWGADSLSDAQLA-YAASDVLHLHALRDRLDTMLARENRT 174

Query: 567 HVYERLDKPMIDVVSQMEITG 587
            +        + V +++++ G
Sbjct: 175 DLAAAC-FGFLPVRARLDLDG 194


>gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 203

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                   E  G  +    T  ++    K   +  S  + +             L   T+
Sbjct: 7   QNDLPNNFELEGDLAIDTETMGLNLHRDKLCLLQFSNGNGEAH-----------LVHFTN 55

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYV 495
           QD T  N         LK    ++   KI H  ++D   + +Y  I +       + S +
Sbjct: 56  QDYTAPN---------LKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +   SH +  + ++ L+     I K ++SS        S+ +E+A ++   + QL  +
Sbjct: 107 VRTYTDSHGLKDLCRELLNIN---ISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDI 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           L+  L+ E    + + +    +   + +++ G
Sbjct: 164 LQKMLLKENRYELAQDI-FHFLPTRANLDLIG 194


>gi|148238801|ref|YP_001224188.1| ribonuclease D [Synechococcus sp. WH 7803]
 gi|147847340|emb|CAK22891.1| Ribonuclease D [Synechococcus sp. WH 7803]
          Length = 214

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 71/218 (32%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +++     +W ++     + +       +     +   + I                   
Sbjct: 13  VLDGDLNAEWSERFAASTALAVDTEAMGLIHGRDRLCLVQIC------------------ 54

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
                 Q +  +  L +     LK   E     K+ H  ++D   L    GI +      
Sbjct: 55  --DDKDQVACIRIALGQSEAPRLKALMEAATIEKVFHFARFDVAALATGLGIRVNPIFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    +D+++D Q+  +A  ++ 
Sbjct: 113 KVGSRLARTYTPRHGLKDLVMELVGV---ELDKQAQSSDWGRVDELTDVQLA-YAANDAR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E    + +      I V+S ++ 
Sbjct: 169 YLLPARRQLEVMLRREGRWELAQSC-FQCIPVMSDLDR 205


>gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
 gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
          Length = 206

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 24/177 (13%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           SA+    T  ++    +   + +S  D                S    Q + G+      
Sbjct: 21  SAAIDTETMGLNPHRDRLCVVQMSPGDG---------------SADVIQIAQGQREAPN- 64

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LK+   +   +KI H  ++D   L   +G+  +      + S ++ +    H +  
Sbjct: 65  ----LKQLLADPTIVKIFHFARFDLAALSNAFGVMPQPVYCTKIASRLIRTYTDRHGLKD 120

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           + ++ L+    E+ K ++SS    +        +A  +   +  L   L   L  E 
Sbjct: 121 LVRELLNI---ELSKQQQSSDWGAQTLSDAQLAYAASDVLHLHALRDKLDAMLAREN 174


>gi|42570539|ref|NP_850877.2| endonuclease, putative [Arabidopsis thaliana]
 gi|332006193|gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana]
          Length = 453

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 51/282 (18%)

Query: 25  LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVT-FRNEIYPDYKAN 83
            +     G   + + G  N   +LL+   K     +   +FD       R E+   Y + 
Sbjct: 52  EMLTNEAGEVTSHLQGMFNRTIRLLEAGIK---PVY---VFDGKPPELKRQELAKRY-SK 104

Query: 84  RPKIPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDI 120
           R      L   +                          +   +  G+P +E    EA+  
Sbjct: 105 RADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATS-EAEAQ 163

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT--TCLYDTVKEE----KIDIEHVIKKWGI 174
            A      +  G    + S D D +   +P     L D    +    + ++  ++++  +
Sbjct: 164 CAALCKSGKVYG----VASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQL 219

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             ++ + L  L+G   D    I GIG +TA  L++++G++E IL N ++ + +   E   
Sbjct: 220 TMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEW-- 275

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            Y E  +L ++      DV        +     +   ++ FL
Sbjct: 276 PYNEARKLFKE-----PDVITDEEQLDIKWTSPDEEGIVQFL 312


>gi|225450415|ref|XP_002278964.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 341

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 98/282 (34%), Gaps = 51/282 (18%)

Query: 25  LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR 84
            +     G   + + G   M  + ++         +   +FD      + +      + R
Sbjct: 52  EMLTNEAGEVTSHLQG---MFSRTIRLLEAGLKPVY---VFDGKPPDLKKQELAKRFSRR 105

Query: 85  PKIPEMLLPQ-----------------------LPLVRLATQAFGIPAIEIQGFEADDII 121
               E L                              +   +  G+P IE    EA+   
Sbjct: 106 ADATEDLTEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPS-EAEAQC 164

Query: 122 ATYTYIAEKEGFAVT-IISTDKDLMQLVSPT--TCLYDTVKEE----KIDIEHVIKKWGI 174
           A            V  + S D D +   +P     L D    +    + DI  ++++  +
Sbjct: 165 AALCK-----SGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNL 219

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             ++ + L  L+G   D    I GIG +TA  L++++G++ENIL N +R + +   +   
Sbjct: 220 TMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDW-- 275

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            Y E  RL ++  +   D  + I          +   LI+FL
Sbjct: 276 PYQEARRLFKEPQVFSDDEQLDIKWSA-----PDEEGLITFL 312


>gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 902

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 115/299 (38%), Gaps = 40/299 (13%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K+   S +     KI  EQ   + F E  + +    +++  +T + + K ++    KL++
Sbjct: 221 KSDDGSRVVHPLEKIPMEQLVDRDFPES-EPIKPPALDDTPFTHVEDLKSLEVLATKLKS 279

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +  +                          SF+  T  + +S  T         L 
Sbjct: 280 ATEFAVDLE--------------------HNHYRSFQGLTCLMQISTRTEDFIVDTLKLR 319

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDI 505
           K +  YL++ F++    K+ H    D + L R +GI +    D    S +L   R+S   
Sbjct: 320 KYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQMDRNS--- 376

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
                + L +    +  +++      ++     ++ ++A E+++ +L ++ L+R +L+ E
Sbjct: 377 ----LEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKE 432

Query: 564 K------LLHVYERL-DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
                  LL VY+R  +  +     ++      +    LK+   E     LS+  NIY 
Sbjct: 433 SSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKE--NEFDARQLSVLANIYK 489


>gi|73544169|ref|XP_847979.1| flap endonuclease-1 (FEN-1) [Leishmania major strain Friedlin]
 gi|122048622|sp|Q4FYU7|FEN1_LEIMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|321438333|emb|CBZ12085.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
           Friedlin]
          Length = 395

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 85/266 (31%), Gaps = 31/266 (11%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ----- 146
             Q+   +   +  GIP I+    EA+   A      +       + + D D +      
Sbjct: 139 RDQIDESKKLLRLMGIPVIQAPS-EAEAQCAELVKKGKAWA----VGTEDMDALTFGSTV 193

Query: 147 -LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
            L              +I ++ V++  G+  ++ V L  L G   D +P +PGIG + A 
Sbjct: 194 MLRHLNISDAKKRPIVEIHLDEVLQTTGLSMDQFVDLCILLG--CDYVPKVPGIGPQKAW 251

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE--HLI 263
             +Q YG++E+ L +    K              A    K        P     E   + 
Sbjct: 252 EGIQRYGSIESFLESLDTTKHPVP----------ADFYYKEARAFFQNPEVTRAEEIDIQ 301

Query: 264 LEDCNGPRLISFL--KAL----EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIE 317
             + +   LI FL  + L       K I R+   +             I     +  A  
Sbjct: 302 FSEPDEVGLIQFLVKEKLFNPDRVNKGIARLRAAFTRKTQGRLDSFFTITKVPQQTAAAR 361

Query: 318 TEIDRDTTIKTSQFSSLSDQTSKINS 343
             +      +  ++  +S    K  S
Sbjct: 362 APLVGTKRPRDGKYVHVSGTLRKATS 387


>gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group]
          Length = 877

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 115/299 (38%), Gaps = 40/299 (13%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K+   S +     KI  EQ   + F E  + +    +++  +T + + K ++    KL++
Sbjct: 196 KSDDGSRVVHPLEKIPMEQLVDRDFPES-EPIKPPALDDTPFTHVEDLKSLEVLATKLKS 254

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               +  +                          SF+  T  + +S  T         L 
Sbjct: 255 ATEFAVDLE--------------------HNHYRSFQGLTCLMQISTRTEDFIVDTLKLR 294

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDI 505
           K +  YL++ F++    K+ H    D + L R +GI +    D    S +L   R+S   
Sbjct: 295 KYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQMDRNS--- 351

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
                + L +    +  +++      ++     ++ ++A E+++ +L ++ L+R +L+ E
Sbjct: 352 ----LEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKE 407

Query: 564 K------LLHVYERL-DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
                  LL VY+R  +  +     ++      +    LK+   E     LS+  NIY 
Sbjct: 408 SSDENDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKE--NEFDARQLSVLANIYK 464


>gi|322709296|gb|EFZ00872.1| DNA polymerase gamma [Metarhizium anisopliae ARSEF 23]
          Length = 1090

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 84/282 (29%), Gaps = 46/282 (16%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +   K  +G +++    +P     + AD    EL I 
Sbjct: 614 ILPQVIPMGTITRRAVENTWLTASNAKKNRVGSELKAMVKAPKGYCFVGADVDSEELWI- 672

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +           N               D+H   A  I G+         R  AK  N
Sbjct: 673 ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIT--------RNDAKVFN 723

Query: 806 FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHE---------------- 844
           +  IYG        L  Q    +   +  +   R +    G                   
Sbjct: 724 YGRIYGAGLKFAATLLRQFNPSLSERQTMEVASRLYANTKGTKTNRKVIHNKPFWRGGTE 783

Query: 845 -YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903
            ++        +     T        + + S     +     + IN  IQ S  D     
Sbjct: 784 SFVFNKLEEFAEQERPRTPVLGAGITEALMSR-FISKGGYLTSRINWAIQSSGVDYLHLL 842

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
           ++S+   +    ++ ++ + +HDE+ + V E++   A+  + 
Sbjct: 843 IVSMDFLIRRFNISARLAITVHDEIRYLVKEQDKYRAAMALQ 884


>gi|71652611|ref|XP_814958.1| flap endonuclease-1 (FEN-1) [Trypanosoma cruzi strain CL Brener]
 gi|122023721|sp|Q4DKQ5|FEN1_TRYCR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|70879977|gb|EAN93107.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma cruzi]
          Length = 393

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 24/220 (10%)

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD       +E+    K +  +   +   QL   +   Q  GIP ++    EA+   A  
Sbjct: 115 FDTAKEEGNDELME--KMS-KRTVRVSREQLEEAKKLLQLMGIPVVQAPS-EAEAQCAEL 170

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEK 178
               +       + + D D +   +P    + T  E K        ++ ++   G+   +
Sbjct: 171 VKKKKAW----AVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQ 226

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  L G   D +P IPGIG + A   ++++G++E +L +    +         E A 
Sbjct: 227 FIDLCILLG--CDYVPKIPGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEAR 284

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
              L  + V    ++ I          + +   L+ FL  
Sbjct: 285 QFFLKPE-VTPAEEIEIQF-------REPDEEGLVKFLVE 316


>gi|116072599|ref|ZP_01469865.1| 3'-5' exonuclease [Synechococcus sp. BL107]
 gi|116064486|gb|EAU70246.1| 3'-5' exonuclease [Synechococcus sp. BL107]
          Length = 214

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 79/218 (36%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      W ++   + S +       +     +   + I+      D   +V  + I 
Sbjct: 13  VFDGDLDASWTERYLQMPSLAVDTEAMGLIHGRDRLCLVQIA------DAQDRVACVRIG 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L   T+ +              L++ FE     K+ H  ++D   L     I+++     
Sbjct: 67  LGQSTAPN--------------LQRLFEAASVEKVFHFARFDVAALAAGLDIAVQPLFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    +D+++D Q+  +A  +  
Sbjct: 113 KVGSRLGRTYTPRHGLKDLVMELVGV---ELDKGAQSSDWGRVDELTDVQLA-YAANDVR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E    + +R     I V+++++ 
Sbjct: 169 YLLPARNQLETMLRREGRWELAQRC-FTCIPVIAELDR 205


>gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
 gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
          Length = 218

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 19/194 (9%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L+     +    T  +D    +   + +S  D                S H 
Sbjct: 15  HRHDLPDGLDLGPVVAVDTETMGLDPRRDRLCLVQLSAGDN---------------SAHL 59

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
            Q               LK+  E+    K+ H  ++D  +LH   G++        + S 
Sbjct: 60  VQIVPPALGGRGADCPNLKRLLEHPGVTKLFHFARFDLAMLHHALGVTTAPVICTKIASK 119

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + +  +     EI K +++S         +   +A  +   +  +W 
Sbjct: 120 LVRTYTDRHGLKDLCRDLVGI---EISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWA 176

Query: 555 LLRPKLIVEKLLHV 568
            L   L+ E    +
Sbjct: 177 RLEALLVREGRREL 190


>gi|195579078|ref|XP_002079389.1| GD22040 [Drosophila simulans]
 gi|194191398|gb|EDX04974.1| GD22040 [Drosophila simulans]
          Length = 1078

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 105/323 (32%), Gaps = 71/323 (21%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +        T+T R         +      LG ++R    +PP  +L+ AD    EL I 
Sbjct: 706  ICPQVVACGTLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIA 765

Query: 759  AHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + +       +                N  D+H + A  +            R HAK IN
Sbjct: 766  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVIN 816

Query: 806  FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEY--IEKTKNFVRQNGY 858
            ++ IYG        L  Q       SEA     + F    G   Y   E ++  +++N  
Sbjct: 817  YARIYGAGQLFAETLLRQFNPTFSASEAKAKAIKMFSITKGKQVYSSYEASRLAIQRNRT 876

Query: 859  VETIFGR---------------------------------RIHYDEINSPKSSIRNINER 885
            V  +F R                                     +    P    R +  R
Sbjct: 877  VAEVFHRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALEADTGPDQEQRFLPTR 936

Query: 886  AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE--ITTASQI 943
              IN  +Q  A D     ++S+   +  H    +  L  HDEL + V EE       +  
Sbjct: 937  --INWVVQSGAVDFLHLMLVSMRWLMGSH---VRFCLSFHDELRYLVKEELSPKAALAMH 991

Query: 944  IVHSMEKA-CLPKINL-RVPLKV 964
            I + M ++ C+ +I L  +P+ V
Sbjct: 992  ITNLMTRSFCVSRIGLQDLPMSV 1014


>gi|302504898|ref|XP_003014670.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
 gi|291177976|gb|EFE33767.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
          Length = 359

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A      +  G A    S D D +   +P    + T
Sbjct: 105 CKRLLGLMGIPYLDAP-TEAEAQCAVLAKAGKVFGAA----SEDMDTLCFAAPVLLRHLT 159

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++  G+   + V L  L G   D +  IP +G  TA  +++++
Sbjct: 160 FSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLG--CDYLDPIPKVGPNTALKMIRDH 217

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G LE ++       +KK    I +     + +R+L       P   P         +   
Sbjct: 218 GTLEKVVEAIQSDPKKKY--VIPDDWPYLQ-ARELFFNPDVRPADAPECDFKWSAPDVEG 274

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 275 LVRFLVE 281


>gi|146337290|ref|YP_001202338.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
 gi|146190096|emb|CAL74088.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
          Length = 204

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 72/206 (34%), Gaps = 27/206 (13%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            S +    T  ++    +   + +S  D   D   ++     D                 
Sbjct: 18  SSVAIDTETMGLNPHRDRLCVVQLSPGDGSADV-VQIPKGHTDAPN-------------- 62

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                LK    N    KI H  ++D   + H +G+  +      + S +  +    H + 
Sbjct: 63  -----LKTLLGNTAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            + ++ L+    ++ K ++SS    D +S+ Q+  +A  +   +  L   L   L  E  
Sbjct: 118 DLVRELLNI---DLSKQQQSSDWGADSLSEPQLA-YAASDVLHLHALREKLDVMLAREGR 173

Query: 566 LHVYERLDKPMIDVVSQMEITGIQID 591
           L + +      +   + +++ G + D
Sbjct: 174 LALAQAC-FAFLPHRATLDLGGFEAD 198


>gi|307151178|ref|YP_003886562.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
 gi|306981406|gb|ADN13287.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
          Length = 209

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 27/214 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           ++        + +     + +    T  +     +   + +       D +  V  I I 
Sbjct: 8   VLEGDLSDDILAQYLQAEAIAVDTETMGLIPHRDRLCLVQLC------DPTGYVTAIRIA 61

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI 489
                +                LK+  EN H +K+ H  ++D   L  + GI        
Sbjct: 62  KGQKEAP--------------KLKQLMENNHSIKVFHFARFDVAQLRHHLGIETTPIFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSN 547
            + S +  +  SSH + S+  +       E+ K+ +SS       +S+ Q+  +A  +  
Sbjct: 108 KIASKLARTYTSSHGLKSLVLELEGI---ELDKTAQSSDWGNAANLSEEQLS-YAANDVR 163

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            +L L   L   L  E    + +   + +  +VS
Sbjct: 164 YLLGLKQKLITMLQREDRWQLAQDCFQCLPVIVS 197


>gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510]
 gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510]
          Length = 208

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 24/183 (13%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
             +    T  ++    +   + +S  D                +VH  Q   G+      
Sbjct: 24  CVAIDTETMGLNPHRDRLCLVQLSAGDG---------------AVHLVQFRPGRYEAPN- 67

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LK+   +    K+ H  ++D  V+  Y G+  R      + S ++ +    H +  
Sbjct: 68  ----LKRLLTDPGVTKLFHFARFDVAVMKAYLGVDCRPVYCTKVASKLVRTFTDRHGLKD 123

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           + +  L     EI K ++SS        +   ++A  +   +  L   L   L  E   H
Sbjct: 124 LCKDLLGV---EISKQQQSSDWGAPELTTDQMKYAASDVLHLHDLKAKLDVMLAREGRTH 180

Query: 568 VYE 570
           + +
Sbjct: 181 LAQ 183


>gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
 gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
          Length = 204

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 72/201 (35%), Gaps = 27/201 (13%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           S +    T  +     +   + +S  D   D   ++     D                  
Sbjct: 19  SVAIDTETMGLHPHRDRLCVVQLSNGDGSADV-VQIPQGATDAPN--------------- 62

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LKK   +   +KI H  ++D   L++ +G+  +      + S +  +    H +  
Sbjct: 63  ----LKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKD 118

Query: 508 IAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           + ++ L     ++ K ++SS    D +SD+Q+  +A  +   +  L   L   L  E   
Sbjct: 119 LVRELLGI---DLSKQQQSSDWGADSLSDAQLA-YAASDVLHLHALRDKLDTMLARENRT 174

Query: 567 HVYERLDKPMIDVVSQMEITG 587
            +        + + +++++ G
Sbjct: 175 DLAAAC-FGFLPIRARLDLDG 194


>gi|47219815|emb|CAG03442.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1246

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 88/326 (26%)

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            +   +      A T+T R         +   +  +G +++     PP   L+ AD    E
Sbjct: 856  QYGAILPQVITAGTVTRRAVEPTWLTASNARRDRVGSELKAMVQVPPGYHLVGADVDSQE 915

Query: 755  LRIL-----AHIAKITPLYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800
            L I      AH A +      F             D+H   A        + V    R H
Sbjct: 916  LWIAAVLGEAHFAGMHGCT-AFGWMTLQGKKSQGTDLHSRTA--------DAVGI-SREH 965

Query: 801  AKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYI-----EKTK 850
            AK  N+  IYG       RL  Q    + ++EA    K+ +    G+  Y      E   
Sbjct: 966  AKVFNYGRIYGAGQAFAERLLMQFNHRLSQTEADRKAKQMYSLTKGVRRYHLSEEGEWLV 1025

Query: 851  NFV------RQNGYVETIFGRRI-HYDEINSPKSSIRNINER------------------ 885
              +       +NG V     RRI       S +     + +R                  
Sbjct: 1026 KELGIEVEREENGSVSLQELRRITRLASQCSRRKKWDLVEKRLWSGGTESDMFNKLESIA 1085

Query: 886  -----------------------------AAINAPIQGSAADITRRAMISVHKSLEDHKL 916
                                         + +N  +Q SA D     ++++    ++H +
Sbjct: 1086 HSAQPATPVLGCRISRALEPKAVGNEFITSRVNWAVQSSAVDYLHLILVAMKWLCQEHDI 1145

Query: 917  ATKMLLQIHDELVFEVPEEEITTASQ 942
              +  + IHDE+ + V  E+   A  
Sbjct: 1146 DGRFCISIHDEVRYLVSSEDRYRACA 1171


>gi|169614686|ref|XP_001800759.1| hypothetical protein SNOG_10490 [Phaeosphaeria nodorum SN15]
 gi|160702800|gb|EAT81884.2| hypothetical protein SNOG_10490 [Phaeosphaeria nodorum SN15]
          Length = 1130

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 85/290 (29%), Gaps = 62/290 (21%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +   K  +G +++    +P     + AD    EL I 
Sbjct: 665 ILPQIIPMGTVTRRSVENTWLTASNAKKNRVGSELKSMVRAPKGYCFVGADVDSEELWI- 723

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +           N               D+H   A  I G+         R  AK  N
Sbjct: 724 ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGI--------SRNDAKVFN 774

Query: 806 FSIIYGIS---PFRLATQLRIPR------SEAADYIK---------RYFHRFPGIH---- 843
           +  IYG        L  Q             A D  +         +  H  P       
Sbjct: 775 YGRIYGAGLKFASTLLRQFNPSLTESQTSKTANDLYQDTKGKKTNRKMLHERPFWRGGTE 834

Query: 844 EYI-EKTKNFVRQN-------GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895
            ++  K ++F  Q        G   T   +R +           +     + IN  IQ S
Sbjct: 835 SFVFNKLEDFAEQERPRTPVLGAAITEALQRRYL---------SKGGFMTSRINWAIQSS 885

Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
             D      +S+      + L  ++ + +HDE+ + V   +   A+  + 
Sbjct: 886 GVDYLHLLTVSMDYLTRRYNLDARLAITVHDEIRYLVKSADKYRAAMALQ 935


>gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 567

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 82/546 (15%), Positives = 155/546 (28%), Gaps = 173/546 (31%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +Q  E+A  +   +  +   L          H Y   +  +  +   +   G+ +D DL 
Sbjct: 4   AQFVEYARRDVAAMRDVVKRL--------PSHNYSGAELALWFLDQTINDRGVLVDTDLA 55

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +     + +   +L      L+G     ++ +   D L   L       T+ G      Q
Sbjct: 56  QAAIGAVERAKCTLAHRTEALTGGAVQAATQR---DALLHHL------STEHGVALPDMQ 106

Query: 656 DLEQINCGDNPII-----KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
                 C D+P++     + +   RQ S   +    +L N  ++  +   T     ++ T
Sbjct: 107 QHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRT 166

Query: 711 GRLASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTK 743
           GR A       N+P  T     I                           R   I+P  K
Sbjct: 167 GRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHK 226

Query: 744 KLISADYSQIELRILAHIAKITPLYQVFEN------------------------------ 773
           KL+ AD S IE R+LA +A  TP    F +                              
Sbjct: 227 KLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQ 286

Query: 774 ----------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI--------------I 809
                       DI++   A  FG+  + V+ Q R+  K    ++              +
Sbjct: 287 RNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAM 346

Query: 810 YGISPFRLATQLRIPRSEAAD----------------------------YIKRYFHRFPG 841
           Y I    +A Q  +P     +                            + + + +  P 
Sbjct: 347 YHIDLEAMAEQAALPPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPA 406

Query: 842 IHEYIEKTK----------NFVRQNGYVETIFGR---RIHYD------------------ 870
           I  + +  +                  +   + R   R+H                    
Sbjct: 407 IAAFWKALQFAATDAIRHPETAHTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGAL 466

Query: 871 -----EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
                   + K +         +    Q  + D+    M ++  +         ++L +H
Sbjct: 467 SYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAA------GYAIVLTVH 520

Query: 926 DELVFE 931
           DE++ E
Sbjct: 521 DEMITE 526


>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 867

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 99/245 (40%), Gaps = 14/245 (5%)

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE----TIGSASFKIITD 397
           N+ Q  + ++LER +   +     +  + +         ++ ++          F     
Sbjct: 204 NANQPFEHVWLERSEDDQRVMHPLEKLSVLDFVDKDLNEMEPVKPLPLEETPFKFVQEVK 263

Query: 398 TMDAFHSKPIAIA-IST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
            +    +K   +   +  L+     SF+  T  + +S  T         L   I  YL++
Sbjct: 264 DLKELVAKLRGVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 323

Query: 456 FFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
            F++    KI H    D + L R +GI +    D    S VL+ GR+S  +  + Q +  
Sbjct: 324 IFKDPKKKKIMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLGRNS--LEFLLQHFCG 381

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
            T     K  +++    +    ++  +A E+++ +L ++ ++R  L +E++    E  D 
Sbjct: 382 VTA---NKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDVMR--LELERMAKDDEHTDS 436

Query: 575 PMIDV 579
           P++ V
Sbjct: 437 PLLQV 441


>gi|209542515|ref|YP_002274744.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530192|gb|ACI50129.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 25/185 (13%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
            GS +       ++    +   + IS  D                S H  Q   G  +  
Sbjct: 23  HGSIAVDTEAMGLNPHRDRLCLVQISAGDG---------------SAHLVQILPGTPSPN 67

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDI 505
                 L +   +    K+ H  ++D  +L H  G+++       + S ++ +    H +
Sbjct: 68  ------LARLMADPSITKLMHFARFDVAILQHSLGVTVAPVICTKIASKLVRTFTERHGL 121

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           A + ++ L     ++ K +++S         + + +A  +   +  LW  L   L  E  
Sbjct: 122 AQLCRELLGV---DLSKQQQTSDWGAPELTPEQKAYAASDVLHLHALWTKLEALLHREGR 178

Query: 566 LHVYE 570
             + +
Sbjct: 179 RDLAQ 183


>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter sp. FRC-32]
 gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter sp. FRC-32]
          Length = 390

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 87/260 (33%), Gaps = 33/260 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   KD+   V++L      +F +  D++  +  K   I +S L Q          +  
Sbjct: 22  IIETQKDLNLLVEQLSRENILAFDLEADSLHHYTEKVCLIQVSNLSQ--------TALID 73

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
            L+                 LS L     +    K+ H   YD   L+R +G+ +    D
Sbjct: 74  PLAPVD--------------LSPLAPVLADRGIRKVFHGADYDMRSLYRDFGLEVCNMFD 119

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            M+    L           +A         E+ K  + +    +   +++ E+A  ++ +
Sbjct: 120 TMIACQFLGEKEVG-----LAAALKKRFGVELNKKYQKADWSKRPFSAEMIEYAKMDTAL 174

Query: 549 ILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           +++L+L L  +L  +  L  V E  +       +  +   + I      ++       L 
Sbjct: 175 LIRLYLQLEEELRAKGRLEWVEEESELVSCVRAASRDHEPLFIRFKGAAKLKPRALAVLE 234

Query: 608 SL----EENIYDLSGEKFNL 623
            L    +E         F +
Sbjct: 235 ELLRMRDEKARKKDVPPFRI 254


>gi|332709748|ref|ZP_08429707.1| ribonuclease D [Lyngbya majuscula 3L]
 gi|332351575|gb|EGJ31156.1| ribonuclease D [Lyngbya majuscula 3L]
          Length = 216

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 73/205 (35%), Gaps = 27/205 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +    +   Q+     S +    T  +     +   + +     +             
Sbjct: 15  VCDRDLPESICQEYLRADSLAVDTETMGLIYQRDRLCLVQLCDPQGR------------- 61

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
             V   +   G+    +     LK+  E  + LK+ H  ++D  +L    GI +      
Sbjct: 62  --VTFVRIDKGQTEAPR-----LKQLLEATNVLKVFHFARFDVAMLRQNLGIDVNPVFCT 114

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSN 547
            + S +  +  SSH +  + ++     R ++ KS +SS    +  +SD Q+ E+A  +  
Sbjct: 115 KIASKLARTYTSSHGLKELVKE---LERIDLDKSAQSSDWGNVANLSDQQL-EYAANDVR 170

Query: 548 VILQLWLLLRPKLIVEKLLHVYERL 572
            +L +   L   L  E    + ++ 
Sbjct: 171 YLLNVRQKLINMLEREDRWELAQQC 195


>gi|62859561|ref|NP_001017005.1| flap endonuclease 1 [Xenopus (Silurana) tropicalis]
          Length = 382

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      G+P ++    EA+   A         G      + D D +   +P    + T
Sbjct: 141 CKKLLTLMGVPYVDAPC-EAEATCAALVK----AGKVYAAATEDMDALTFGTPVLLRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  V++  G+  E+ V L  L G   D    I GIG K A  L++++
Sbjct: 196 ASEAKKLPIQEFHLNRVMQDMGVSHEQFVDLCILLG--SDYCETIRGIGPKRAIDLIRQH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+ N   +K+    EN L + E    +R+L +    V        L   + +   
Sbjct: 254 KSIEEIVDNID-LKKYPIPENWL-HKE----ARQLFLEPEVVDTEST--ELKWIEPDEEG 305

Query: 272 LISFL 276
           L++F+
Sbjct: 306 LVAFM 310


>gi|170593271|ref|XP_001901388.1| Flap endonuclease-1 [Brugia malayi]
 gi|317374878|sp|A8QCH0|FEN1_BRUMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|158591455|gb|EDP30068.1| Flap endonuclease-1, putative [Brugia malayi]
          Length = 378

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             Q    +      GIP ++    EA+   A         G     +S D D +   SP 
Sbjct: 135 KEQSEEAKRLVTLMGIPVLDAPC-EAEAQCAALAK----AGKVFATVSEDMDALTFGSPI 189

Query: 152 TCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
                   E      +++++  V+K +G+   + V L  L G   D +  I GIG K A 
Sbjct: 190 LLRQMIASEAKKLPVKEMNLNQVLKDFGMNMGQFVDLCILLG--CDYVSTIRGIGPKKAF 247

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
            L+++Y  +EN+L   ++ K    ++   +Y E  RL  +      DV     LE L+ +
Sbjct: 248 ELIKKYECIENVLETINQTKYPIPQDW--QYKEARRLFLE-----PDVMNCENLE-LVWK 299

Query: 266 DCNGPRLISFL 276
           + +   ++ FL
Sbjct: 300 EPDVEGIVQFL 310


>gi|325095909|gb|EGC49219.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H88]
          Length = 1159

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 90/272 (33%), Gaps = 36/272 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K  R    E+    +   +   + FG+P I     EA+   A    +   +G    +++ 
Sbjct: 814  KKARRDADEVSHIMVSECQELLRLFGLPYITAP-MEAEAQCAELLSLGLVDG----VVTD 868

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +  +   +E      + K++ +   K++    L G   D   G
Sbjct: 869  DSDIF--LFGGTRVYKNMFNQAKFVECYISNDLEKEYNLDRNKLIQFAHLLG--SDYTEG 924

Query: 196  IPGIGYKTAALLLQEYGNLENIL---------INASRIKQKKRRENILEYAETARL---- 242
            IPG+G  +A  +L E+  LE+            N         R+   +      L    
Sbjct: 925  IPGVGPVSALEILTEFPTLEDFRDWWSQVQMGANLPEDSHSIFRKKFKKNVTKLFLPPGF 984

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              +++     +  +            +   L  F        L++ +  + +     + P
Sbjct: 985  PDKRVDTAYLEPKVDSDPSAFQWGVPDLNALRQF--------LMSTIGWSQERTDEVLVP 1036

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
            V+ D+N  E +G                 F+ 
Sbjct: 1037 VIRDMNRREQEGTQSNITNFFQGPQGAGAFAP 1068


>gi|209524209|ref|ZP_03272759.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
 gi|209495300|gb|EDZ95605.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
          Length = 207

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 27/222 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       + +     + +    T  +     +   + I       D   +V  I I+
Sbjct: 6   VCDRDLSDSRLSEFMAAEALAIDTETMGLLPGRDRLCLVQIC------DPKGQVVAIRIE 59

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
                + +              LK   E  + LK+ H  ++D   L H  GI +      
Sbjct: 60  RGQREAPN--------------LKTLLETANILKVFHFARFDVATLRHNLGIEVNPVFCT 105

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +    H +  +  +       E+ KS +SS   +  + S+ Q  +A  +   
Sbjct: 106 KIASKLARTYTGKHGLKDLIMELEGV---ELDKSSQSSDWGNAANLSENQLNYAANDVRY 162

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLD--KPMIDVVSQMEITGI 588
           +L     L   L  E+   +        P I  +  M+   I
Sbjct: 163 LLSAKDKLIQMLKREERWDLALDCFQCLPTIVTLDLMQFDDI 204


>gi|154299492|ref|XP_001550165.1| hypothetical protein BC1G_11008 [Botryotinia fuckeliana B05.10]
 gi|150857350|gb|EDN32542.1| hypothetical protein BC1G_11008 [Botryotinia fuckeliana B05.10]
          Length = 1122

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 84/282 (29%), Gaps = 46/282 (16%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            T  +        T+T R         +      +G +++    +PP    + AD    E
Sbjct: 651 ETGYILPQIIPMGTVTRRAVENTWLTASNAKPNRVGSELKSMIKAPPGYCFVGADVDSEE 710

Query: 755 LRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
           L I A +           N               D+H   A  I G+         R  A
Sbjct: 711 LWI-ASLVGDAQFKLHGGNAVGFMTLEGTKAAGTDLHSRTAG-ILGIT--------RNDA 760

Query: 802 KTINFSIIYGIS---PFRLATQLRIPRSEAADYIK--RYFHRFPGIHE------------ 844
           K  N+  IYG        L  Q     +EA         +    G+              
Sbjct: 761 KVFNYGRIYGAGLKFASTLLRQFNPSLTEAETSHTAGNLYKATKGVKTSRKILYPGPFWR 820

Query: 845 -----YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
                ++        +     T        + + +     +     + IN  IQ S  D 
Sbjct: 821 GGTESFVFNKLEEFAEQEKPRTPVLGAGITEALMAC-FVSKGGFMTSRINWAIQSSGVDY 879

Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
               +IS+   +  + +  ++ + +HDE+ + V +E+   A+
Sbjct: 880 LHLLIISMDYIIRLYNINARLAITVHDEIRYLVKDEDRYRAA 921


>gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
 gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002]
 gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
          Length = 207

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 74/204 (36%), Gaps = 25/204 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +     + +++    G+ +    T  ++ +  +   + +       D +  V  I I 
Sbjct: 6   LFDQDLSLEILERYLKSGAIAIDTETMGLNPYRDRLCLVQLC------DDAGYVSAIRIA 59

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                + +              LK   E     K+ H  ++D   L   +GI  R F   
Sbjct: 60  QGQTAAPN--------------LKALMEAPEITKVFHFARFDLAQLRHVFGIETRPFFCT 105

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID-KISDSQVQEHAIENSNV 548
            + S +  +  SSH + ++ ++ +     E+ KS +SS   +  +  ++  ++A  +   
Sbjct: 106 KIASKLGRTYTSSHGLKALVKELMGV---ELDKSAQSSDWGNVAVLSAEQLKYASNDVRY 162

Query: 549 ILQLWLLLRPKLIVEKLLHVYERL 572
           ++ +   L   L  E    + E  
Sbjct: 163 LIPMMRKLTAMLQRENRWPLMEEC 186


>gi|33863970|ref|NP_895530.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313]
 gi|33635554|emb|CAE21878.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313]
          Length = 214

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 74/218 (33%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      W  +     + +       +     +   + I       D +  V  + I 
Sbjct: 13  VFDGDLDSDWANRYLRASAIAVDTEAMGLIHGRDRLCLVQIC------DPADNVACVRIG 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L   ++                L+K  E     K+ H  ++D   L    GI +      
Sbjct: 67  LGQTSAP--------------RLQKLMEAPSVEKVFHFARFDVAALASGLGIYVLPIFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    ++++SD Q+  +A  ++ 
Sbjct: 113 KVASRLARTYSPRHGLKEVVMELVGV---ELDKQAQSSDWGRVEELSDVQLA-YAANDAR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E    + +R     I V+++++ 
Sbjct: 169 YLLPARQRLEMMLRREGRWEIAQRC-FSCIPVIAELDR 205


>gi|146090657|ref|XP_001466297.1| flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
 gi|317374906|sp|A4I2L4|FEN1_LEIIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|134070659|emb|CAM69008.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
 gi|322500111|emb|CBZ35186.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 395

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 86/266 (32%), Gaps = 31/266 (11%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ----- 146
             Q+   +   +  GIP I+    EA+   A      +       + + D D +      
Sbjct: 139 RDQIDESKKLLRLMGIPVIQAPS-EAEAQCAELVKKGKAWA----VGTEDMDALTFGSTV 193

Query: 147 -LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
            L              +I ++ V++  G+   + V L  L G   D +P +PGIG + A 
Sbjct: 194 MLRHLNISDAKKRPIAEIHLDEVLQITGLSMGQFVDLCILLG--CDYVPKVPGIGPQKAW 251

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
             +Q YG++E+ L +    K              A    K        P   P E + ++
Sbjct: 252 EGIQRYGSIESFLESLDTTKHPVP----------ADFYYKEARAFFQNPEVTPAEEINIQ 301

Query: 266 --DCNGPRLISFL--KAL----EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIE 317
             + +   LI FL  + L       K I R+                 +     +  A  
Sbjct: 302 FSEPDEVGLIQFLVKEKLFNPDRVNKGIARLRAALTRKTQGRLDSFFTVTKVPQQTAAAR 361

Query: 318 TEIDRDTTIKTSQFSSLSDQTSKINS 343
             +      +  ++  +S    K  S
Sbjct: 362 APLAGTKRPRDGKYVHVSGTLRKATS 387


>gi|58262724|ref|XP_568772.1| gamma DNA-directed DNA polymerase [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57223422|gb|AAW41465.1| gamma DNA-directed DNA polymerase, putative [Cryptococcus neoformans
            var. neoformans JEC21]
          Length = 1376

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 47/289 (16%)

Query: 686  DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
            D +  + ++    +        T+T R         +   K  +G +++    +PP   +
Sbjct: 931  DQMVVYRDQEFGMILPQVITMGTVTRRAVEATWLTASNAKKNRVGSELKAMVRAPPGYSI 990

Query: 746  ISADYSQIELRILAHIA----KITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKV 793
            + +D    EL I + +      +     +             D+H   A+ I G+     
Sbjct: 991  VGSDVDSEELWISSVMGDSQFGMHGATAIGWMTLEGNKSAGTDLHSKTAS-ILGI----- 1044

Query: 794  SPQMRRHAKTINFSIIYGISPFR-----LATQLRIPRSEAADYIKRYFHRFPGIHE---- 844
                R  AK  N+S IYG          L    ++ +  A       +    G       
Sbjct: 1045 ---SRDAAKVFNYSRIYGAGKKHAVQLLLQGDSKLTKETAGKLADNLYKSTKGAKALRAR 1101

Query: 845  -----------------YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
                             Y+  T   +  +    T          +             + 
Sbjct: 1102 NLPVASVPSLWHGGSESYLFNTLEAIALSDRPTTPALGCGVTRALRKSYLEESASYLPSR 1161

Query: 888  INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            +N  +Q S  D     ++S+   ++ + +  + L+ +HDE+ +   EE+
Sbjct: 1162 VNWVVQSSGVDYLHLLIVSMEYLIKKYDIKARYLISVHDEVRYLAKEED 1210


>gi|317376168|sp|B1H158|FEN1_XENTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|169642201|gb|AAI60482.1| flap structure specific endonuclease 1 [Xenopus (Silurana)
           tropicalis]
          Length = 382

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 21/185 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      G+P ++    EA+   A         G      + D D +   +P    + T
Sbjct: 141 CKKLLTLMGVPYVDAPC-EAEATCAALVK----AGKVYAAATEDMDALTFGTPVLLRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +  V++  G+  E+ V L  L G   D    I GIG K A  L++++
Sbjct: 196 ASEAKKLPIQEFHLNRVMQDMGVSHEQFVDLCILLG--SDYCETIRGIGPKRAIDLIRQH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E I+ N   +K+    EN L + E    +R+L +    V        L   + +   
Sbjct: 254 KSIEEIVDNID-LKKYPIPENWL-HKE----ARQLFLEPEVVDTEST--ELKWIEPDEEG 305

Query: 272 LISFL 276
           L++F+
Sbjct: 306 LVAFM 310


>gi|312221967|emb|CBY01907.1| similar to flap endonuclease 1 [Leptosphaeria maculans]
          Length = 423

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 18/188 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            R   +  GIP I     EA+   A         G  V    S D D +   SP    + 
Sbjct: 169 CRRLLKLMGIPFIVAP-TEAEAQCAVLAR-----GGKVYAAASEDMDTLTFNSPILLRHL 222

Query: 157 TVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E++      I ++ V++   +   + + L  L G   D +  I GIG  TA  L++E
Sbjct: 223 TFSEQRKEPILEIHLDKVLEGLAMDRTQFIDLCILLG--CDYLDPIKGIGPSTALKLIRE 280

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           + +LE ++ +     Q K +  I E    A  +R L +     P   P      E  +  
Sbjct: 281 HKDLEGVVKHIQ--SQPKGKLTIPEDWPFAD-ARLLFLEPDVRPADDPECDFKWEAPDVE 337

Query: 271 RLISFLKA 278
            L+ FL  
Sbjct: 338 GLVKFLVE 345


>gi|302652986|ref|XP_003018331.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
 gi|291181960|gb|EFE37686.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
          Length = 376

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A      +  G A    S D D +   +P    + T
Sbjct: 122 CKRLLGLMGIPYLDAP-TEAEAQCAVLAKAGKVFGAA----SEDMDTLCFAAPVLLRHLT 176

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++  G+   + V L  L G   D +  IP +G  TA  +++++
Sbjct: 177 FSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLG--CDYLDPIPKVGPNTALKMIRDH 234

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G LE ++       +KK    I +     + +R+L       P   P         +   
Sbjct: 235 GTLEKVVEAIQSDPKKKY--VIPDDWPYLQ-ARELFFNPDVRPADAPECDFKWSAPDVEG 291

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 292 LVRFLVE 298


>gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 203

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 68/200 (34%), Gaps = 24/200 (12%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                   E  G  +    T  ++    K   +  S  + +          +        
Sbjct: 7   QNDLPNNFELEGDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHFVHFTNQDY-------- 58

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYV 495
                       I   LK    ++   KI H  ++D   + +Y  I +       + S +
Sbjct: 59  ------------IAPNLKALLLDKTRCKIFHFARFDLAFIKKYLSIDLENIFCTKISSKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +   SH +  + ++ L+     I K ++SS        S+ +E+A ++   + QL  +
Sbjct: 107 VRTYTDSHGLNDLCRELLNIN---ISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDI 163

Query: 556 LRPKLIVEKLLHVYERLDKP 575
           L+  L+ E    + + + + 
Sbjct: 164 LQKMLLKENRYELAQDIFRF 183


>gi|254470791|ref|ZP_05084194.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
 gi|211959933|gb|EEA95130.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
          Length = 206

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 75/221 (33%), Gaps = 25/221 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K+    +    +  + +    T  ++    +   + +S+ D   D          
Sbjct: 2   TIRYHKNDLPDLSNYSSADAVAVDTETLGLNPHRDRLCVVQLSSGDGSADV--------- 52

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFED 488
                       +    +     L+  FE+    KI H  ++D  +L  Y  IS+     
Sbjct: 53  -----------VQIERGQLAAPNLQALFEDASKPKIFHFARFDVAILKEYLDISVSPVWC 101

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + S ++ +    H +  I ++ +     ++ K ++SS    +        +A  +   
Sbjct: 102 TKIASKLVRTYTDRHGLKDICRELIGV---DLSKQQQSSDWAAEKLTDAQLAYAASDVLH 158

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           + +L   L   L  E+   + ++     +   +Q+++ G  
Sbjct: 159 LHKLKERLEFMLEREERTEIAQKC-FDFLPTRAQLDLAGWP 198


>gi|310789378|gb|EFQ24911.1| DNA polymerase family A [Glomerella graminicola M1.001]
          Length = 1148

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 87/284 (30%), Gaps = 50/284 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +   K  +G +++    +PP    + AD    EL I 
Sbjct: 673 ILPQIIPMGTITRRAVENTWLTASNAKKNRVGSELKSMVKAPPGYSFVGADVDSEELWI- 731

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +           N               D+H   A+ I G+         R  AK  N
Sbjct: 732 ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT--------RNDAKVFN 782

Query: 806 FSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHE--------------- 844
           +  IYG    + A QL       +   E  +   R + +  G                  
Sbjct: 783 YGRIYGAG-LKFAGQLLRQFNPNLSEKETNETAARLYAKTKGTKTNRSVLSKRPFWRGGT 841

Query: 845 ---YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901
                 K + F  Q     T        + +   +   +N    + IN  IQ S  D   
Sbjct: 842 ESFLFNKLEEFAAQERP-RTFVLGAGITEALM-RRFINQNGYLTSRINWAIQSSGVDYLH 899

Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
             ++ +        +  ++ + +HDE+ + V + +   A+  + 
Sbjct: 900 LLIVGMDYLTRRFNIEARLAITVHDEIRYLVKDHDKYRAAMALQ 943


>gi|327350765|gb|EGE79622.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ATCC
            18188]
          Length = 1166

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 92/270 (34%), Gaps = 32/270 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    +++ 
Sbjct: 825  KKDRRDADEVSHIMVSECQELLRLFGLPYITAP-MEAEAQCAELLSLGLVDG----VVTD 879

Query: 141  DKDLMQLVSPTT--CLYDTVKEEKIDIEHVIKK-WGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D+           +++TVK  +  + + ++K + +   K++    L G   D   GIP
Sbjct: 880  DSDIFLFGGTRVYKNMFNTVKFVECYLSNDLEKEYNLDRSKLIQFAHLLG--SDYTEGIP 937

Query: 198  GIGYKTAALLLQEYGNLENIL---------INASRIKQKKRRENILEYAETARL-----S 243
            G+G  TA  +L E+  LE+                      R+   +      L      
Sbjct: 938  GVGPVTALEILTEFPTLEDFRDWWSQVQMGAKLPEDSHSAFRKKFKKNVTKLFLPPGFPD 997

Query: 244  RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            +++     +  +            +   L  F        L++ +  + +     + PV+
Sbjct: 998  KRIDSAYLEPEVDSDPSAFQWGVPDLNALRQF--------LMSTIGWSQERTDEVLVPVI 1049

Query: 304  LDINTTENKGIAIETEIDRDTTIKTSQFSS 333
             D+N  E +G            +    F+ 
Sbjct: 1050 RDMNRREQEGTQSNITNFFQGPLGAGAFAP 1079


>gi|239609845|gb|EEQ86832.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ER-3]
          Length = 1166

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 92/270 (34%), Gaps = 32/270 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    +++ 
Sbjct: 825  KKDRRDADEVSHIMVSECQELLRLFGLPYITAP-MEAEAQCAELLSLGLVDG----VVTD 879

Query: 141  DKDLMQLVSPTT--CLYDTVKEEKIDIEHVIKK-WGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D+           +++TVK  +  + + ++K + +   K++    L G   D   GIP
Sbjct: 880  DSDIFLFGGTRVYKNMFNTVKFVECYLSNDLEKEYNLDRSKLIQFAHLLG--SDYTEGIP 937

Query: 198  GIGYKTAALLLQEYGNLENIL---------INASRIKQKKRRENILEYAETARL-----S 243
            G+G  TA  +L E+  LE+                      R+   +      L      
Sbjct: 938  GVGPVTALEILTEFPTLEDFRDWWSQVQMGAKLPEDSHSAFRKKFKKNVTKLFLPPGFPD 997

Query: 244  RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            +++     +  +            +   L  F        L++ +  + +     + PV+
Sbjct: 998  KRIDSAYLEPEVDSDPSAFQWGVPDLNALRQF--------LMSTIGWSQERTDEVLVPVI 1049

Query: 304  LDINTTENKGIAIETEIDRDTTIKTSQFSS 333
             D+N  E +G            +    F+ 
Sbjct: 1050 RDMNRREQEGTQSNITNFFQGPLGAGAFAP 1079


>gi|261198979|ref|XP_002625891.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis SLH14081]
 gi|239595043|gb|EEQ77624.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis SLH14081]
          Length = 1128

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 92/270 (34%), Gaps = 32/270 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    +++ 
Sbjct: 787  KKDRRDADEVSHIMVSECQELLRLFGLPYITAP-MEAEAQCAELLSLGLVDG----VVTD 841

Query: 141  DKDLMQLVSPTT--CLYDTVKEEKIDIEHVIKK-WGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D+           +++TVK  +  + + ++K + +   K++    L G   D   GIP
Sbjct: 842  DSDIFLFGGTRVYKNMFNTVKFVECYLSNDLEKEYNLDRSKLIQFAHLLG--SDYTEGIP 899

Query: 198  GIGYKTAALLLQEYGNLENIL---------INASRIKQKKRRENILEYAETARL-----S 243
            G+G  TA  +L E+  LE+                      R+   +      L      
Sbjct: 900  GVGPVTALEILTEFPTLEDFRDWWSQVQMGAKLPEDSHSAFRKKFKKNVTKLFLPPGFPD 959

Query: 244  RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
            +++     +  +            +   L  F        L++ +  + +     + PV+
Sbjct: 960  KRIDSAYLEPEVDSDPSAFQWGVPDLNALRQF--------LMSTIGWSQERTDEVLVPVI 1011

Query: 304  LDINTTENKGIAIETEIDRDTTIKTSQFSS 333
             D+N  E +G            +    F+ 
Sbjct: 1012 RDMNRREQEGTQSNITNFFQGPLGAGAFAP 1041


>gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
 gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
          Length = 218

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 19/194 (9%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L+     +    T  +D    +   + +S  D                S H 
Sbjct: 15  HRHDLPDGLDLGPVVAVDTETMGLDPRRDRLCLVQLSAGDN---------------SAHL 59

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY 494
            Q               LK+  E+    K+ H  ++D  +L H  G++        + S 
Sbjct: 60  VQIVPPALGGRGADCPNLKRLLEHPGVTKLFHFARFDLAMLYHALGVTTAPVICTKIASK 119

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + +  +     EI K +++S         +   +A  +   +  +W 
Sbjct: 120 LVRTYTDRHGLKDLCRDLVGI---EISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWA 176

Query: 555 LLRPKLIVEKLLHV 568
            L   L+ E    +
Sbjct: 177 RLEALLVREGRREL 190


>gi|322699619|gb|EFY91379.1| DNA polymerase gamma [Metarhizium acridum CQMa 102]
          Length = 1090

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 83/287 (28%), Gaps = 46/287 (16%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                +        T+T R         +   K  +G +++    +P     + AD    
Sbjct: 609 DSHGFILPQVIPMGTITRRAVENTWLTASNAKKNRVGSELKAMVKAPKGYCFVGADVDSE 668

Query: 754 ELRILAHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRH 800
           EL I A +           N               D+H   A  I G+         R  
Sbjct: 669 ELWI-ASLVGDATFKIHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIT--------RND 718

Query: 801 AKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHE----------- 844
           AK  N+  IYG        L  Q    +   +  +   + +    G              
Sbjct: 719 AKVFNYGRIYGAGLKFAATLLRQFNPSLSERQTMEVASKLYANTKGTKTNRKVIYNKPFW 778

Query: 845 ------YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
                 ++        +     T        + + S     +     + IN  IQ S  D
Sbjct: 779 RGGTESFVFNKLEEFAEQERPRTPVLGAGITEALMSR-FISKGGYLTSRINWAIQSSGVD 837

Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945
                ++S+   +    +  ++ + +HDE+ + V E++   A+  + 
Sbjct: 838 YLHLLIVSMDFLIRRFNINARLAITVHDEIRYLVKEQDKYRAAMALQ 884


>gi|47934816|gb|AAT39846.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 126

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
           +   D P  K I E+  L K ++   DS   H  ++  RVH        +TGR+    PN
Sbjct: 20  LEGIDIPEAKTIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRVITNGAVTGRMTHHSPN 76

Query: 720 LQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
           L  +P +    G++ R  +  P   KLI  D S +ELR+LAH  +    
Sbjct: 77  LAQVPSVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERY 125


>gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1]
 gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 516

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/372 (13%), Positives = 103/372 (27%), Gaps = 106/372 (28%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-------- 726
            + +K  +    ++         R    + +    TGR A     LQN+P          
Sbjct: 131 AEAAKASTAKLTAMVKCACDDG-RARGLHLVYGAGTGRWAGRLIQLQNLPRGSVKKADLA 189

Query: 727 --------------------TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
                                 +   +R   I       I +D+S IE RI A +A    
Sbjct: 190 IPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEW 249

Query: 767 LYQVFEN-----SLDIHRMVAAEI-------FGVNIEKVSPQMRRHAKTINFSIIYGISP 814
             Q F +       D++ + A +I       +   + + S +   + K    ++ +G   
Sbjct: 250 KIQAFRDFDAGTGRDLYLIGAEKILTLLKVPYAHPLNENSQERTPYGKVPELALGFGGGV 309

Query: 815 FRLATQ-----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ-----NGYVETIFG 864
               +      +++   EA      +    P +       ++            V T  G
Sbjct: 310 GAFQSMAAIYGMKVTDEEADQIKVAWREAHPRVVALWRNMEDAAFNAISNPGRVVSTAGG 369

Query: 865 R-----------------------------RIHYDEINSPKSSIRNINERAAINAP---- 891
           R                             R     I   +  +++     ++N+     
Sbjct: 370 RIKYVVKGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMSVNSITRKW 429

Query: 892 --------------IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--E 935
                         IQ  A D+        +  L+       +++ +HDE + E+ +   
Sbjct: 430 ERCTTYGGSLAENAIQAIARDLLA------NALLKLEAAGYPVVIHVHDEALAEIRKGVG 483

Query: 936 EITTASQIIVHS 947
            +     I+  +
Sbjct: 484 SVDEFKSIMCDT 495


>gi|299755225|ref|XP_001828510.2| gamma DNA-directed DNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|298411126|gb|EAU93343.2| gamma DNA-directed DNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1341

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 85/282 (30%), Gaps = 57/282 (20%)

Query: 689  PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
            P+   ++   +        T+T R         +   K  +G +++    +P    ++ A
Sbjct: 870  PDSSKEKWGIIVPQVVTMGTVTRRAIEKTWLTASNAKKNRVGSELKAMVRAPEGYAIVGA 929

Query: 749  DYSQIELRILAHIAKITPLYQVF------------ENSLDIHRMVAAEIFGVNIEKVSPQ 796
            D    EL I + +                          D+H   A +I G+        
Sbjct: 930  DVDSEELWISSCMGDAQFGLHGATAIGWMTLEGTKAAGTDLHSKTA-KILGI-------- 980

Query: 797  MRRHAKTINFSIIYGIS-------------------PFRLATQLRIPRSEAADYIKRYFH 837
             R  AK  N+S IYG                       +LA  L         +    F 
Sbjct: 981  SRDQAKVFNYSRIYGAGMRHAILLLLQGSSAMLPEAAQKLAENLYASTKGKNTHRTDIFE 1040

Query: 838  R---FPGIHEYI-EKTKNFVRQN-------GYVETIFGRRIHYDEINSPKSSIRNINERA 886
            R   F G   Y+  K +     +       G   T    + +                 +
Sbjct: 1041 RKFWFGGSESYLFNKLEEIALSDKPQTPALGCGVTYALSKEYLPTGFGSD------YLPS 1094

Query: 887  AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             IN  +Q S  D     ++S+   ++ + +  + L+ +HDEL
Sbjct: 1095 RINWVVQSSGVDYLHLLIVSMQYLIQRYNINARYLISVHDEL 1136


>gi|134108716|ref|XP_777011.1| hypothetical protein CNBB5370 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50259694|gb|EAL22364.1| hypothetical protein CNBB5370 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1453

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 47/289 (16%)

Query: 686  DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
            D +  + ++    +        T+T R         +   K  +G +++    +PP   +
Sbjct: 1008 DQMVVYRDQEFGMILPQVITMGTVTRRAVEATWLTASNAKKNRVGSELKAMVRAPPGYSI 1067

Query: 746  ISADYSQIELRILAHIA----KITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKV 793
            + +D    EL I + +      +     +             D+H   A+ I G+     
Sbjct: 1068 VGSDVDSEELWISSVMGDSQFGMHGATAIGWMTLEGNKSAGTDLHSKTAS-ILGI----- 1121

Query: 794  SPQMRRHAKTINFSIIYGISPFR-----LATQLRIPRSEAADYIKRYFHRFPGIHE---- 844
                R  AK  N+S IYG          L    ++ +  A       +    G       
Sbjct: 1122 ---SRDAAKVFNYSRIYGAGKKHAVQLLLQGDSKLTKETAGKLADNLYKSTKGAKALRAR 1178

Query: 845  -----------------YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887
                             Y+  T   +  +    T          +             + 
Sbjct: 1179 NLPVASVPSLWHGGSESYLFNTLEAIALSDRPTTPALGCGVTRALRKSYLEESASYLPSR 1238

Query: 888  INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
            +N  +Q S  D     ++S+   ++ + +  + L+ +HDE+ +   EE+
Sbjct: 1239 VNWVVQSSGVDYLHLLIVSMEYLIKKYDIKARYLISVHDEVRYLAKEED 1287


>gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01]
          Length = 204

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 LE     +    T  ++    +   I  S+ D                 V    
Sbjct: 8   NDLPDNLELGPIVAIDTETMGLNPMRDRLCVIQFSSGDGNAHI------------VQIEP 55

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVL 496
           D+     + K           +++ +K+ H  ++D  +L  +  I++       + S ++
Sbjct: 56  DAPQAPNICK--------ILLDQNKVKLFHFARFDIAILKHHFKINISPVYCTKIASKLV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +  + H + ++ ++ LS    EI K ++SS            E+A  +   + +L   L
Sbjct: 108 RTYTNKHGLKNLLREMLSI---EISKQQQSSDWGASELTKAQIEYAASDVLYLHKLMDKL 164

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              L  E    + E      + + + +++ G   D
Sbjct: 165 NLNLKRENRYEIAEAC-FNFLPMRATLDLAGWSED 198


>gi|116327594|ref|YP_797314.1| ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331795|ref|YP_801513.1| ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120338|gb|ABJ78381.1| Ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125484|gb|ABJ76755.1| Ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 212

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 25/206 (12%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           +++ +     +       ++    +   + I                       ++  S 
Sbjct: 22  LEEYKADDRLAVDCEMMGLNPRRDRLCVVQIC--------------------DSSNNVSL 61

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSG 499
            +    ++    LK  FEN   +KI H  + D L L  R GIS+       + S +  + 
Sbjct: 62  VQILPDQKEAPLLKSLFENPEIVKIFHFARMDSLFLRYRLGISLENVFCTKIASKLARTY 121

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
              H +  + +++     + I K  +SS    KI      E+A  +   ++ L   L   
Sbjct: 122 TDKHGLKDLIKEF---YDEVIDKKNQSSDWGKKILTKDQIEYASGDVKYLISLEQKLTEI 178

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEI 585
           L+ E    +        + V +Q++ 
Sbjct: 179 LVREGRDSLAREA-FRCLPVFNQIDW 203


>gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium
           EB000_55B11]
 gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 204

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 LE     +    T  ++    +   I  S+ D                 V    
Sbjct: 8   NDLPDNLELGPIVAIDTETMGLNPMRDRLCVIQFSSGDGHAHI------------VQIEP 55

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVL 496
           D+     + K           +++ +K+ H  ++D  +L  +  I++       + S ++
Sbjct: 56  DAPQAPNICK--------ILLDQNKVKLFHFARFDIAILKHHFKINISPVYCTKIASKLV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +  + H + ++ ++ LS    EI K ++SS            E+A  +   + +L   L
Sbjct: 108 RTYTNKHGLKNLLREMLSI---EISKQQQSSDWGASELTKAQIEYAASDVLYLHKLMDKL 164

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              L  E    + E      + + + +++ G   D
Sbjct: 165 NLNLKRENRYEIAEAC-FNFLPMRATLDLAGWSED 198


>gi|198417766|ref|XP_002129714.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
          Length = 380

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 37/223 (16%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTI-IS 139
           K  R  + +         +   +  GIP +E    EA+   A+           V    +
Sbjct: 132 KVTREHMDD--------CKKLLRLMGIPVVEAP-TEAEAQCASLVK-----SGKVYATAT 177

Query: 140 TDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            D D +   S     + T  E      ++   E V+++  +  E+ V L  L G   D  
Sbjct: 178 EDMDALTFHSSRLLRHLTFSEARKMPIQEFVYEKVLEEMEMTHEQFVDLCILLG--CDYC 235

Query: 194 PGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
             I G+G K A  L+++Y +++ IL N    K       + + A    L+  +     DV
Sbjct: 236 EHIRGVGPKRAYDLIKQYRSIDEILKNIDLKKYTVPDGWVYKDARQLFLAPDVA-ASEDV 294

Query: 254 PITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVAT 290
                   L   D +   ++ F               I ++  
Sbjct: 295 -------ELKWNDPDEEGIVKFMVEEKGFNEDRVRSGIKKILQ 330


>gi|194173081|ref|YP_002003725.1| DNA polymerase [Escherichia phage rv5]
 gi|114796119|gb|ABI79293.1| DNA polymerase [Escherichia phage rv5]
          Length = 775

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 77/233 (33%), Gaps = 18/233 (7%)

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLE-PNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
           L NH   +        S   T T R       N+     K  +G+++R  +  PP    I
Sbjct: 544 LLNHPRLKIDHKLPAKSSGLTNTSRQKHSICANMPKPSPKVVMGKEMRSLWGVPPGYFEI 603

Query: 747 SADYSQIELRILAH--IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
             D S +E  I A         LY    ++ D H+  A     V   +VS   R   K I
Sbjct: 604 GIDGSNLEQLIGAWGAFEFDNGLYYDVVSNGDAHQNNAEAYTKVAGREVS---RNDGKPI 660

Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864
            + ++YG    ++A  L I        I   +   PG+    E  + F    G       
Sbjct: 661 TYGVMYGAQKDKVADMLDISPELGQRVIDALWDANPGLKGRKEDLEKFWEATGK------ 714

Query: 865 RRIHYDEINSPKSS-IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916
                  I S     I   ++ + +NA  Q   A +     I +H  +     
Sbjct: 715 -----KFIYSFDGHAIWTRSKHSLLNAYQQNGGASLCDLVGILMHHQMVKRGW 762


>gi|189184295|ref|YP_001938080.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda]
 gi|189181066|dbj|BAG40846.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda]
          Length = 210

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 84/215 (39%), Gaps = 19/215 (8%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
             L   G  +    T  ++    +   +     + KDDT    E   +            
Sbjct: 12  DNLMISGDLAIDTETMGLNLIRDRLCLLQFC-QESKDDTIDDKEVFLVKFEDQQYNCRN- 69

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGR 500
                      LKK   ++   KI H  ++D   +  Y G+++       + S ++ +  
Sbjct: 70  -----------LKKLLMDDGRTKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYT 118

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            SH +  + ++ L     +I K  +SS    +   S  +E+A ++   + ++  +L   L
Sbjct: 119 DSHGLKDLCRELLGI---QISKQCQSSDWGGQSLTSDQEEYAAKDVVYLHRIKNILEEML 175

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           I E+ L + +++    +   +++++ G Q D D+L
Sbjct: 176 IREQRLDIAQKI-FKFLPARAELDVIGWQ-DIDIL 208


>gi|158334839|ref|YP_001516011.1| ribonuclease D [Acaryochloris marina MBIC11017]
 gi|158305080|gb|ABW26697.1| ribonuclease D [Acaryochloris marina MBIC11017]
          Length = 209

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 75/223 (33%), Gaps = 29/223 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      ++Q        +    T  +     +   + I   + +     ++    +D
Sbjct: 8   VCDRDLSDAFLQDYLQADRIAVDTETMGLKPHRDRLCLVQICNPEGQVTV-VRIAQGQMD 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDI 489
                                 LK+  E++  LK+ H  ++D   +LH   I        
Sbjct: 67  APN-------------------LKQLMESDTVLKVFHFARFDIATLLHHLDIETMPIFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSN 547
            + S ++ +    H +  + ++ +    +E+ KS +SS     + +S+ Q+  +A  +  
Sbjct: 108 KIASKLVRTYSPRHGLKELVRELVG---EELDKSAQSSDWGNAENLSEEQL-NYASNDVR 163

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLD--KPMIDVVSQMEITGI 588
            +L     L   L  E+ L +        P I  +  M    I
Sbjct: 164 YLLSAQATLVKMLEREERLELAMACFQCLPTIVTLDLMHFDNI 206


>gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246]
 gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic]
 gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246]
 gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic]
          Length = 203

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                   +  G  +    T  ++    K   +  S  + +             L   T+
Sbjct: 7   QNDLPNNFKLEGDLAIDTETMGLNLHRDKLCLLQFSNGNGEAH-----------LVHFTN 55

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYV 495
           QD T  N          K    ++   KI H  ++D   + +Y  I +       + S +
Sbjct: 56  QDYTAPNV---------KALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +   SH +  + ++ L+     I K ++SS        S+ +E+A ++   + QL  +
Sbjct: 107 VRTYTDSHGLKDLCRELLNIN---ISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDI 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           L+  L+ E    + + +    + + + +++ G
Sbjct: 164 LQKMLLKENRYELAQDI-FRFLPIRANLDLIG 194


>gi|164426998|ref|XP_001728355.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
 gi|157071561|gb|EDO65264.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
          Length = 396

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 20/187 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   +P    + T
Sbjct: 143 CQKLLKLMGIPYIVAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFNAPILLRHLT 197

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +E V++  G+  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 198 FSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLG--CDYLDPIPKVGPSTALKLIREH 255

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           G LE ++         K R  I E    E A   R L       P   PL     +  + 
Sbjct: 256 GTLEKVVEWMK--ADPKGRYQIPEDWPFEDA---RTLFFEPDVRPADDPLCDFKWDKPDI 310

Query: 270 PRLISFL 276
             LI FL
Sbjct: 311 EGLIQFL 317


>gi|301605305|ref|XP_002932281.1| PREDICTED: DNA polymerase subunit gamma-1-like [Xenopus (Silurana)
            tropicalis]
          Length = 1197

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 91/310 (29%), Gaps = 85/310 (27%)

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            +   +      A T+T R         +      +G +++     PP   +I AD    E
Sbjct: 803  KYGCILPLVVSAGTITRRAVEPTWLTASNARADRVGSELKAMVQVPPGYHIIGADVDSQE 862

Query: 755  LRIL-----AHIAKITPLYQVFEN--------SLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            L I      AH A I                   D+H   A+ +            R HA
Sbjct: 863  LWIAAILGEAHFAGIHGCTAFGWMTLQGKKSTGTDLHSKTASTV---------GISREHA 913

Query: 802  KTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEYI---------- 846
            K  N+  IYG       RL  Q    + + +AA+  K+ +    GI  YI          
Sbjct: 914  KVFNYGRIYGAGQAFAERLLMQFNHRLTQEQAAEKAKQMYAVTKGIRRYILSKEGEWLVE 973

Query: 847  -------------------EKTKNFVRQNGYVETIFGRRIHYDEIN-------------- 873
                                K +         +     R  +                  
Sbjct: 974  ELGIPVERGEENSVSLQDLRKIQKEASAKSRRKWNLVSRRIWTGGTESQMFNKLETIAMS 1033

Query: 874  -SPK--------------SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
             SPK              ++++     + IN  +Q SA D     ++++    E + +  
Sbjct: 1034 PSPKTPVLGCHISRALEPAAVKGEFITSRINWVVQSSAVDYLHLMLVAMKWLFEAYDIDG 1093

Query: 919  KMLLQIHDEL 928
            +  + IHDE+
Sbjct: 1094 RFCISIHDEV 1103


>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
 gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
          Length = 380

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 28/212 (13%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           +  +  +   +     +++ +  L      +    ++ + A+  +   I  S        
Sbjct: 2   HHQDPTAPIWVATPTALRRMMNHLLACEQIAVDTESNGLHAYQEQICLIQFSVPG----- 56

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
               + +   L+                 LS L + F N    K+ H  +YD L L R +
Sbjct: 57  ---ADYLVDPLASVN--------------LSGLNEIFSNPGIEKVFHAAEYDILCLKRDF 99

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G +     D M+ + +L  GRS   +A++ ++    T   + K  + +    +     + 
Sbjct: 100 GFTFTHLFDTMIAARIL--GRSEVGLAALLEEHFGVT---LDKRYQRANWARRPLPPAML 154

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +A  +++ ++ L   L  +L    L  + E 
Sbjct: 155 NYARLDTHYLIDLRNHLAKELAERGLTALAEE 186


>gi|27375830|ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110]
 gi|27348968|dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110]
          Length = 204

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 24/178 (13%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G+ +    T  ++    +   + +S  D   D   ++     D                 
Sbjct: 18  GAVAIDTETMGLNPHRDRLCVVQLSPGDGSADV-VQIPKGHTDAPN-------------- 62

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                LK    N    KI H  ++D  VL++ +G+         + S +  +    H + 
Sbjct: 63  -----LKALLANPAITKIFHFARFDVAVLYQSFGVMTGPIYCTKIASRLTRTYTDRHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            + ++ L+    ++ K ++SS             +A  +   +  L   L   L+ E 
Sbjct: 118 DLVREVLNV---DLSKQQQSSDWGSDSLTEPQLAYAASDVLHLHALRERLDAMLVREG 172


>gi|75758711|ref|ZP_00738827.1| Potential 5'-3' exonuclease [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228904490|ref|ZP_04068585.1| Potential 5'-3' exonuclease [Bacillus thuringiensis IBL 4222]
 gi|228930993|ref|ZP_04093950.1| Potential 5'-3' exonuclease [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|74493813|gb|EAO56913.1| Potential 5'-3' exonuclease [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228828669|gb|EEM74348.1| Potential 5'-3' exonuclease [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228855575|gb|EEN00140.1| Potential 5'-3' exonuclease [Bacillus thuringiensis IBL 4222]
          Length = 395

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 89/257 (34%), Gaps = 53/257 (20%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNM------LWKLLQNSRKE 55
                + ++D +   +R  YA            VN ++   +       + ++++ S   
Sbjct: 13  ADRRRVIIIDFNHLAWR--YAFSNAKGLSINRLVNGVSTIIDTTVPSYAIKQIVRWSNFG 70

Query: 56  SIASHFAVIFDYPAVTFRNEIYP-------------DYKANRPKIPEMLLPQLPLVRLAT 102
              +   V  D P  + R   +              DYK +R       + Q+ +     
Sbjct: 71  VNPT--IVCLDAPVKS-RKAYFSNILNKDKKELIPSDYKGDRKTPNGDFIQQIEIAGALM 127

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLY----- 155
           Q  GI     + +EADDII      A+K+     + +I+ D D++ LV     +Y     
Sbjct: 128 QQGGIYVYRKENYEADDIIHACVQKAKKDFPYLPIDVITGDADMIPLVDEQVSVYMKSKV 187

Query: 156 --------DTVKEEK-IDIE----HVIK--KWGIPPEKMVC-------LQALTGDSIDNI 193
                    T+K       E    +V +  K+     +++         + L GDS D +
Sbjct: 188 HTYANEYSPTIKGYVQYTPESYQTYVQELSKYKTSSTQILVPYNTLLLAKILRGDSSDGL 247

Query: 194 PGIPGIGYKTAALLLQE 210
            G P    +    L+++
Sbjct: 248 KGKPDWKPRMYNQLIEQ 264


>gi|323457006|gb|EGB12872.1| hypothetical protein AURANDRAFT_19112 [Aureococcus anophagefferens]
          Length = 396

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 99/305 (32%), Gaps = 68/305 (22%)

Query: 22  ATPLLSRKHDGLPVNAIAGFCNMLWKLLQN-SRKESIASHFAVIFDYPAVTFRNEIYPDY 80
           A   +    +G   + I G  N   +LLQ   R          +FD      +       
Sbjct: 54  APSSVLTNAEGEQTSHIQGMFNRTIRLLQAGVRPVY-------VFDGKPPNMKGGELAKR 106

Query: 81  KANRPKIPEML-----------------------LPQLPLVRLATQAFGIPAIEIQGFEA 117
            A R +    L                             V+   +  G+P ++    EA
Sbjct: 107 TAKRQEAEAALKKATENDDAEGISKYSALLTKVSRKDCDDVKQLLRLMGVPVVDAPC-EA 165

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-------KIDIEHVIK 170
           +   A      +       + + D D +   S       T  ++       +I    V++
Sbjct: 166 EAQCAELVRGGKAH----AVGTEDMDALTFGSTRQLRNMTFTKKSKDDKVLEITHAAVLE 221

Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230
             G+   + V    L G   D    I G+G KTA  L++E+G++E IL     +K K+R 
Sbjct: 222 GLGLSNAEFVDFCILCG--CDYTSTIRGVGPKTALKLVKEHGSIEAILAK--GLKAKQRG 277

Query: 231 ENILEYAET-------ARL-SRKL-----VMLRTDVPITIPLEHLILEDCNGPRLISFL- 276
           +   E+ +        A + +R L     V    DV        L     +   L +FL 
Sbjct: 278 DVPDEWDDADDGPFVPAYVGARNLFNNHEVTPCGDV-------ELSWGKPDEAGLRAFLV 330

Query: 277 KALEF 281
           + + F
Sbjct: 331 ERMGF 335


>gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
 gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
          Length = 204

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 24/196 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                        + +    T  ++    +   + IS  D + D     +     +    
Sbjct: 6   HRGDLPDDYAPGPAIAVDTETLGLEPHRDRLCVVQISRGDGEADLVQIAKGGPEPV---- 61

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY 494
                            LK+   +    KI H  ++D  VL HR G+         + S 
Sbjct: 62  ----------------VLKRVLTDPAVTKIFHFARFDLAVLFHRLGVMPGPIYCTKVASR 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +  +    H +  + ++ L     EI K ++SS    +       E+A  +   +  L  
Sbjct: 106 LSRTYTDRHGLKDLVRELLGI---EISKQQQSSDWGAETLSPAQIEYAASDVLHLHALRA 162

Query: 555 LLRPKLIVEKLLHVYE 570
            L   L  E+   + E
Sbjct: 163 KLDAMLAREERTALAE 178


>gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 203

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 77/201 (38%), Gaps = 25/201 (12%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G  +    T  ++    K   +  S  + +             L   T+QD T  N    
Sbjct: 18  GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAH-----------LVHFTNQDYTAPNV--- 63

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIA 506
                 K    ++   KI H  ++D   + +Y  I +       + S ++ +   SH + 
Sbjct: 64  ------KALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            + ++ L+     I K ++SS        S+ +E+A ++   + QL  +L+  L+ E   
Sbjct: 118 DLCRELLNIN---ISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRY 174

Query: 567 HVYERLDKPMIDVVSQMEITG 587
            + + +    + + + +++ G
Sbjct: 175 ELAQDI-FRFLPIRANLDLIG 194


>gi|326482848|gb|EGE06858.1| DNA-repair protein rad13 [Trichophyton equinum CBS 127.97]
          Length = 1119

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 101/309 (32%), Gaps = 36/309 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    I++ 
Sbjct: 777  KKDRRDADEVSQIMVTECQQLLRLFGLPYITAP-MEAEAQCAELVTLGLVDG----IVTD 831

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D    +   T +Y  +  +   +E      + K++ +  +K++    L G   D   G
Sbjct: 832  DSDTF--LFGGTRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLG--SDYTEG 887

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRI---------KQKKRRENILEYAETARL---- 242
            IPGIG  TA  +L E+  LE      S++            + R+   +      L    
Sbjct: 888  IPGIGPVTALEILTEFSGLEEFRDWWSQVQLGNKIPDDPHARFRKKFKKNITKLFLPPGF 947

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              + +     +  +            +   +  F        L+  V  + +     + P
Sbjct: 948  PDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQF--------LMATVGWSPERTDEVLVP 999

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            V+ D N  E +G                 F+       K   E+   +L  +   + +  
Sbjct: 1000 VIRDANRREQEGTQSNITGFFQGPQGAGAFAPRQRTAGKSRIEKAFGRLRNQAEARQTTL 1059

Query: 362  PINNDSYTK 370
              + D  T 
Sbjct: 1060 GSSVDEETT 1068


>gi|254431401|ref|ZP_05045104.1| RNAse D protein [Cyanobium sp. PCC 7001]
 gi|197625854|gb|EDY38413.1| RNAse D protein [Cyanobium sp. PCC 7001]
          Length = 224

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           +L+   EN    K+ H  ++D   L    GI++       + S +  +    H +  + Q
Sbjct: 78  HLQALMENAAIEKVFHFARFDVAALAENLGIAVHPIFCTKIGSRLARTYSPRHGLKDVVQ 137

Query: 511 KWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           + +     E+ K  +SS    +D +S++Q+  +A  +   +LQ    L   L  E+   +
Sbjct: 138 ELVGV---ELDKRAQSSDWGEVDDLSEAQLA-YAAGDVRYLLQARDRLERMLRREERWEL 193

Query: 569 YERLDKPMIDVVSQMEIT 586
            +R     + V + ++  
Sbjct: 194 AQRC-FTCLPVFADLDRQ 210


>gi|145514642|ref|XP_001443226.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124447858|sp|A0CYG2|FEN12_PARTE RecName: Full=Flap endonuclease 1-2; Short=FEN-1-2; AltName:
           Full=Flap structure-specific endonuclease 1-2
 gi|124410604|emb|CAK75829.1| unnamed protein product [Paramecium tetraurelia]
          Length = 390

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 92/282 (32%), Gaps = 46/282 (16%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV-------TFRNEIYPDY 80
              +G     + G  N   + L+N  K         +FD             R ++  + 
Sbjct: 58  TDKEGNRTGHLVGLFNRTLQFLENGIKP------VWVFDGKPPLLKSGELARRKKLKEEA 111

Query: 81  KANRPKIPEMLLPQLPLVR----------------LATQAFGIPAIEIQGFEADDIIATY 124
           K       E    Q  L++                   Q  G P I     EA+   A  
Sbjct: 112 KVKTELALEQGDMQQALLQNQRTTTISSIMKEDAIKMLQLMGCPVIIAPC-EAEAQCAEL 170

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVC 181
                  G      + D D +   +P        K+E I     + +IK+  +  E+ V 
Sbjct: 171 CR----AGKIYATATEDMDALTFRTPVLLRGFNTKKEPIYEIIYDDMIKELELTYEQFVD 226

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L  L G   D    I GIG  TA  L++EY ++E IL +  ++  ++ + N  +  +   
Sbjct: 227 LCILCG--CDYTEKIEGIGPGTAYKLIKEYKSIEGILEHVQKVNAEREKNN--QNPKYTV 282

Query: 242 LSRKLVMLRTDVPIT-----IPLEHLILEDCNGPRLISFLKA 278
            S+ L     ++ IT          L     +   L  FL  
Sbjct: 283 PSKFLYQDSRELFITPLVQKGDELQLTWNKPDVDNLKKFLIE 324


>gi|326474654|gb|EGD98663.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
          Length = 1119

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 101/309 (32%), Gaps = 36/309 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    I++ 
Sbjct: 777  KKDRRDADEVSQIMVTECQQLLRLFGLPYITAP-MEAEAQCAELVTLGLVDG----IVTD 831

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D    +   T +Y  +  +   +E      + K++ +  +K++    L G   D   G
Sbjct: 832  DSDTF--LFGGTRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLG--SDYTEG 887

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRI---------KQKKRRENILEYAETARL---- 242
            IPGIG  TA  +L E+  LE      S++            + R+   +      L    
Sbjct: 888  IPGIGPVTALEILTEFSGLEEFRDWWSQVQLGNKIPDDPHARFRKKFKKNITKLFLPPGF 947

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              + +     +  +            +   +  F        L+  V  + +     + P
Sbjct: 948  PDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQF--------LMATVGWSPERTDEVLVP 999

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            V+ D N  E +G                 F+       K   E+   +L  +   + +  
Sbjct: 1000 VIRDANRREQEGTQSNITGFFQGPQGAGAFAPRQRTAGKSRIEKAFGRLRNQAEARQTTL 1059

Query: 362  PINNDSYTK 370
              + D  T 
Sbjct: 1060 GSSVDEETT 1068


>gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
 gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
          Length = 209

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 65/204 (31%), Gaps = 25/204 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       V +     + +    T  +     +   I +   + K             
Sbjct: 8   VGDRDLSDAAVDQYLQSEAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAI--------- 58

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI 489
                      +    +     LKK  E  + LK+ H  ++D   L  +  I ++     
Sbjct: 59  -----------RIARGQTAAPNLKKLLEATNVLKVFHFARFDVATLRHHLDIHVQPIFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +  + H +  +  +     + E+ KS +SS   +  + +  Q  +A  +   
Sbjct: 108 KIASKLARTYTNRHGLKDLVYE---LEQVELDKSAQSSDWGNAANLTDAQLSYAANDVRY 164

Query: 549 ILQLWLLLRPKLIVEKLLHVYERL 572
           +L     L   L  E+   + ++ 
Sbjct: 165 LLSAQQKLVAMLKREERWELAQQC 188


>gi|332796311|ref|YP_004457811.1| XPG I domain-containing protein [Acidianus hospitalis W1]
 gi|332694046|gb|AEE93513.1| XPG I domain protein [Acidianus hospitalis W1]
          Length = 344

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 27/198 (13%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYI-----AEKEGFAVTIISTDK--DLMQLVS-- 149
           +   +A GIP ++    E +   A          A  + +   +   +K    + L    
Sbjct: 131 KRLLEAMGIPVVQAPS-EGEAEAAYLCSQGYTWAAASQDYDSLLFGANKLIRNLTLTGKR 189

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P   +Y  +K E I++E ++KK+GI  E++V +  L G   D  P GI GIG  TA  
Sbjct: 190 KLPKKDVYVEIKPELIELEDLLKKFGITREQLVDIGILIG--TDYDPDGIKGIGPVTALR 247

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           ++++YG +E  +        K   +  +    +  L+          P+  P   L L++
Sbjct: 248 IIKKYGKIEKAVEKGE--LPKYILDLNINEIRSIFLN---------PPVVKPESSLDLKE 296

Query: 267 CNGPRLISFL-KALEFTK 283
            N   +   L     F++
Sbjct: 297 PNEEEIKKILIDEHNFSE 314


>gi|119719343|ref|YP_919838.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
 gi|119524463|gb|ABL77835.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
          Length = 341

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 99/316 (31%), Gaps = 71/316 (22%)

Query: 4   ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
              +  VD  + +Y+ F A       +L     G   + + G    L         E  A
Sbjct: 20  RGRVLAVDALNSVYQ-FLALVRDERGMLFTNSRGEVTSHLIG----LLSRYSRLAYEYDA 74

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLP-----------------------QL 95
           S F  +FD      +       K  R K  +                            +
Sbjct: 75  S-FIFVFDGSPHPLKARELEKRKKQREKAKQEYAELLSKGDLRKAFSKAVVSAEVDDRIV 133

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
              +   +  G P ++    +A+   A      E       + S D D +   SP    Y
Sbjct: 134 ESTKRLVRLMGFPVVDA-VHDAEAQAAYLVKRGEAW----AVSSMDWDSLLYGSPRLVRY 188

Query: 156 DTVKE---------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIG 200
            T+                 E + +E ++   GI   ++V +  L G   D   G+ G+G
Sbjct: 189 LTLTGFEWLPSKQKARKLIPELVTLEELLSGHGITLRQLVDIAILVG--TDYNEGVKGVG 246

Query: 201 YKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
              A  +++ YG+LEN+ ++         R ++ E  E  R       +  + P+     
Sbjct: 247 PLRALKMIKRYGSLENLPVSV--------RRHLPENYEAVR------QIFLNPPLNEKY- 291

Query: 261 HLILEDCNGPRLISFL 276
            L     +   L+ FL
Sbjct: 292 SLSFSPPDKEGLMKFL 307


>gi|317374923|sp|A7UW97|FEN1_NEUCR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 394

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 20/187 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   +P    + T
Sbjct: 141 CQKLLKLMGIPYIVAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFNAPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +E V++  G+  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLG--CDYLDPIPKVGPSTALKLIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           G LE ++         K R  I E    E A   R L       P   PL     +  + 
Sbjct: 254 GTLEKVVEWMK--ADPKGRYQIPEDWPFEDA---RTLFFEPDVRPADDPLCDFKWDKPDI 308

Query: 270 PRLISFL 276
             LI FL
Sbjct: 309 EGLIQFL 315


>gi|123335114|ref|XP_001294157.1| XPG I-region family protein [Trichomonas vaginalis G3]
 gi|121871805|gb|EAX81227.1| XPG I-region family protein [Trichomonas vaginalis G3]
          Length = 335

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 77/188 (40%), Gaps = 23/188 (12%)

Query: 94  QLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
           Q+   +   +  G+P ++    EA+   A         G    + + D D +   +P   
Sbjct: 106 QVEECKQLLECLGVPYVDAPC-EAEAECAALNK----AGLVDAMATEDMDSLAFATPQLI 160

Query: 154 LYDTVKEE-----KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
            + +   +     +ID + +++K G+  E+ V    L G   D    I GIG K A  L+
Sbjct: 161 RHLSYGAKGDDLLQIDYKIMMEKSGLTREEFVDFCILMG--CDYCDTIKGIGKKHAYELI 218

Query: 209 QEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
           ++Y N+E I+ N  +      +  + E  +  R +R+L     +V   +    L  +  +
Sbjct: 219 KKYHNIETIIKNLDK------KYELPEDFDYVR-AREL-FFNHEVTTDVN---LTWKKPD 267

Query: 269 GPRLISFL 276
             ++  FL
Sbjct: 268 VEKVKEFL 275


>gi|238801836|ref|YP_002922886.1| putative DNA polymerase [Enterobacteria phage WV8]
 gi|216263049|gb|ACJ71917.1| putative DNA polymerase [Enterobacteria phage WV8]
          Length = 906

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 60/404 (14%), Positives = 125/404 (30%), Gaps = 93/404 (23%)

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADS------LPNHINKRTQRVHTFYSLASTMTGR 712
             +  +  + + I ++  L   + T  +S        N I     R+     +  T TGR
Sbjct: 510 SYDTIEGELGQKIAKYYTLMHRRRTIENSKDDEKGWLNQIRPDG-RLSAGAMVFGTSTGR 568

Query: 713 LASLEPNLQNIPIKTD-LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV- 770
           +   +  + N+P      G+ +R  +I      ++S D +  +L +L +        +  
Sbjct: 569 M--TQYGIVNVPSGAAVYGEPMRAVWICEEGTNVVSVDMNSAQLVLLCNFMGDKDFTKAV 626

Query: 771 ---------------------FEN-----------------------SLDIHRMVAAEIF 786
                                F+                          D H +  +  F
Sbjct: 627 TQGKEEIEFIRQEDGRYYCKHFDEYLNPEIDKYLRYDSENDLYVVYSGTDAHTL-NSIYF 685

Query: 787 GVNIEK------VSPQM---------RRHAKTINFSIIYGISPFRLATQLRI-PRSEAAD 830
            +N E+       +            R+ AK   +++++G    + A  ++     E A 
Sbjct: 686 SLNDEQDILTCRATQDENLLHEISKGRKKAKNGIYALLFGAGDEKFAKTIKAATTQEGAL 745

Query: 831 YIKRYFHRFPGIHEYIEKTK------NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             + YF R P I + ++  +          +  + +T    +     +    + +   + 
Sbjct: 746 TKQTYFIRLPKIKKLLDDLEADYKATKKALEEVFGKTAAISKG--GFVKVAGAWLWCKSP 803

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKL----------ATKMLLQIHDELVFEVPE 934
              +N  + GS A I   A+    + + D  L            ++L   HDE  +E PE
Sbjct: 804 HKLLNYLLMGSEAQIQNEAINLACRRMIDEGLMKLNGRQPAIGARLLCAYHDETSWECPE 863

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKV--NIKVSNNWQEEN 976
                    +           + L+    V    KV  +W E +
Sbjct: 864 SMTAEVKA-VTDWYYGQASKNLGLKKETLVTGTGKVGKSWLEVH 906


>gi|217976351|ref|YP_002360498.1| 3'-5' exonuclease [Methylocella silvestris BL2]
 gi|217501727|gb|ACK49136.1| 3'-5' exonuclease [Methylocella silvestris BL2]
          Length = 204

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 24/184 (13%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G+ +    T  +     +   + +S  D   D                      +    +
Sbjct: 18  GAVAIDTETMGLVPGRDRLCLVQLSRGDGSAD--------------------LVQIAPAQ 57

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                L +   +    K+ H  ++D  VL++ +G+         + S +  +    H + 
Sbjct: 58  TAAPNLTRLLADPAVEKLFHFARFDIAVLYKTFGVMTGPIYCTKIASKLARTYTDRHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +A++ L     E+ K ++SS     I       +A  +   +  L   L   L  E   
Sbjct: 118 DLARELLGI---ELSKQQQSSDWGGDILSEAQLAYAASDVLHLHALRTKLDAMLEREGRR 174

Query: 567 HVYE 570
            + E
Sbjct: 175 ALAE 178


>gi|322708426|gb|EFZ00004.1| DNA-repair protein rad2 [Metarhizium anisopliae ARSEF 23]
          Length = 395

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   +P    + T
Sbjct: 141 CQRLLKLMGIPFIIAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFNTPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +   + V L  L G   D +  +P +G  TA  L++E+
Sbjct: 196 FSEQRKEPIQEIHLDKVLEGLNMERSQFVDLCILLG--CDYLDPVPKVGPTTALKLIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G LEN++    +  +KK    + E     + +R L           PL     +  +   
Sbjct: 254 GTLENVVDAIEKDSKKKYT--LPEDWPY-KDARDLFFEPDVRKADDPLCDFKWDKPDVEG 310

Query: 272 LISFL 276
           L++FL
Sbjct: 311 LVTFL 315


>gi|194761126|ref|XP_001962783.1| GF15619 [Drosophila ananassae]
 gi|190616480|gb|EDV32004.1| GF15619 [Drosophila ananassae]
          Length = 1134

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 102/336 (30%), Gaps = 82/336 (24%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +        T+T R         +      LG ++R    +PP  KL+ AD    EL I 
Sbjct: 753  ICPQVVACGTLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPPGYKLVGADVDSQELWIA 812

Query: 759  AHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + +       +                N  D+H + A  +            R HAK IN
Sbjct: 813  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVIN 863

Query: 806  FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HRFPGIHEYIEKTKNFV- 853
            ++ IYG        L  Q       SEA     + F        +    E+ ++  +   
Sbjct: 864  YARIYGAGQQFAETLLRQFNPTFSASEAKAKAMKMFSITKGKREYRLREEFHDELDDRAY 923

Query: 854  ----------RQNGYVETIFGRRIHYDEINS----------------------------- 874
                      ++N  +  +F R I      S                             
Sbjct: 924  SSYEASRLAIQRNRTIGEVFHRPIWQGGTESAMFNRLEDIATQSQPQTPFLGGRLSRALE 983

Query: 875  --PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932
                 +         IN  +Q  A D     ++S+   +       +  L  HDEL + V
Sbjct: 984  ADSDPTQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLM---GPHVRFCLSFHDELRYLV 1040

Query: 933  PEEEI--TTASQIIVHSMEKA-CLPKINL-RVPLKV 964
             EE       +  I + M ++ C+ +I L  +P+ V
Sbjct: 1041 KEEVAYKAALAMHITNLMTRSYCVSRIGLKDLPMSV 1076


>gi|315041705|ref|XP_003170229.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
 gi|311345263|gb|EFR04466.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
          Length = 1126

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 99/299 (33%), Gaps = 36/299 (12%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    I++ 
Sbjct: 779  KKDRRDADEVSQIMVTECQQLLRLFGLPYITAP-MEAEAQCAELVALGLVDG----IVTD 833

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D    +   T +Y  +  +   +E      + K++ +  +K++    L G   D   G
Sbjct: 834  DSDTF--LFGGTRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLG--SDYTEG 889

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQK---------KRRENILEYAETARL---- 242
            IPGIG  TA  +L E+ +LE      S I+             R+   +      L    
Sbjct: 890  IPGIGPVTALEILTEFSDLEEFRDWWSEIQLGNKIPDDIHAGFRKKFKKNVTKLFLPPGF 949

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              + +     +  +            +   +  F        L+  +  + +     + P
Sbjct: 950  PDKAVEKAYLEPEVDPDPSEFKWGVPDLDAVRQF--------LMTTIGWSPERTDEVLVP 1001

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
            V+ D+N  E +G                 F+       K   E+   +L  +   + + 
Sbjct: 1002 VIRDVNRREQEGTQSNITGFFQGPQGAGAFAPRQRTAGKSRIEKAFGRLRNQAEARQTT 1060


>gi|49619155|gb|AAT68162.1| flap structure specific endonuclease 1 [Danio rerio]
          Length = 380

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 89/279 (31%), Gaps = 52/279 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  DG   + + G   M ++ ++         +   +FD      ++      +  R   
Sbjct: 54  QNEDGETTSHLMG---MFYRTIRMLESGIKPVY---VFDGKPPQLKSGELEK-RVERRAE 106

Query: 88  PEMLLPQ------------------------LPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            E LL Q                            +      G+P IE    EA+   A 
Sbjct: 107 AEKLLAQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPC-EAEASCAA 165

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
                   G      + D   +   +     + T  E      ++     +++   +  +
Sbjct: 166 LVK----AGKVYATATEDMAGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQ 221

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L  L G   D    I GIG K A  L++++G++E IL N    K +   + + + A
Sbjct: 222 QFIDLCILLG--CDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHRAPEDWLYKEA 279

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
               L  ++V              L   + +   LI F+
Sbjct: 280 RGLFLEPEVV--------DGTSVDLKWNEPDEDGLIQFM 310


>gi|307293724|ref|ZP_07573568.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1]
 gi|306879875|gb|EFN11092.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1]
          Length = 205

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 72/215 (33%), Gaps = 24/215 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
             +   Q +   G  +    T  +     +        +   D    +    F   S + 
Sbjct: 6   HEEDLPQGVLAPGPIAVDTETMGLITPRDRL-----CVVQISDGQGDEHLVRFNPGSDYA 60

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSY 494
           + +              L+    +   LK+ H  ++D   +  Y GI         + S 
Sbjct: 61  APN--------------LRAVLADPARLKLYHFGRFDIAAIRHYMGIVAAPVYCTKIASR 106

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + ++ L    +E+ K ++SS     +     +E+A  +   +  L  
Sbjct: 107 LVRTYTDRHGLKELVRELLG---QELSKVQQSSDWGGPVLSDPQKEYAASDVRYLHALKA 163

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            L  +L+ E  + + +      +   +++++ G  
Sbjct: 164 ELDKRLVREGRMELAQAC-FDFLPHRAELDLAGWP 197


>gi|241760851|ref|ZP_04758940.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753179|ref|YP_003226072.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283856222|ref|YP_162013.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374470|gb|EER63931.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552542|gb|ACV75488.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283775217|gb|AAV88902.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 209

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
             +   +   + G+ +    T  +     +   + IS  D K D          D S   
Sbjct: 10  HEEDLPKDALSEGAVAVDTETMGLITHRDRLCVVQIS--DGKGDQHLVRFAPDSDYSAPN 67

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL-VLHRYGISMRGFEDIMLMSY 494
                            LK    + + LKI H  ++D   +L+  G+         + S 
Sbjct: 68  -----------------LKAVLSDPNRLKIYHFGRFDIAAILYYLGVMAAPVYCTKIASK 110

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLW 553
           ++ +    H +  + ++ L    ++I K ++ S    +K+SD+Q +E+A  +   +  L 
Sbjct: 111 LVRTYTDRHGLKELVRELLG---QDISKQQQCSDWGGEKLSDAQ-REYAASDVRFLHGLK 166

Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
             L  +L  EK   + +      +   ++++I G
Sbjct: 167 EKLDIRLKREKREELAQAC-FDFLPTRAKLDIAG 199


>gi|162147898|ref|YP_001602359.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786475|emb|CAP56057.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 25/185 (13%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
            GS +       ++    +   + IS  D                S H  Q   G  +  
Sbjct: 23  HGSIAVDTEAMGLNPHRDRLCLVQISAGDG---------------SAHLVQILPGTPSPN 67

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDI 505
                 L +   +    K+ H  ++D  +L H  G+++       + S ++ +    H +
Sbjct: 68  ------LARLMADPSITKLMHFARFDVAILQHSLGVTVAPVICTKIASKLVRTFTERHGL 121

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           A + ++ L     ++ K +++S         + + +A  +   +  LW  L   L  E  
Sbjct: 122 AQLCRELLGV---DLSKQQQTSDWGAPELTPEQKAYAASDVLHLHALWTKLEVLLHREGR 178

Query: 566 LHVYE 570
             + +
Sbjct: 179 RDLAQ 183


>gi|109290194|ref|YP_656443.1| RNaseH [Aeromonas phage 25]
 gi|104345867|gb|ABF72767.1| RNaseH [Aeromonas phage 25]
          Length = 304

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 27/174 (15%)

Query: 43  NMLWKLL--------QNSRKESIASHFAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLP 93
            ML  L+        +  + E   +   + FD  A+  +R +I   YK NR    +    
Sbjct: 40  RMLRHLILDTVRNNVKKFKNEYPET--IIAFDDSAMVYWRRDIAWYYKLNRKANKKESPW 97

Query: 94  QLPL----VRLATQAF-----GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDL 144
              L    +            G+  I++   EADDIIA       +EG  V I S+D D 
Sbjct: 98  DWELLFSIINKVVNEMLNIYPGVKMIKLDKTEADDIIAVLVKKFTEEGRCVMISSSDSDF 157

Query: 145 MQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
            QL        Y   +++      V  K+G P   +  ++ + GD+ D + GI 
Sbjct: 158 TQLHKYKGVKQYSPAQKK-----AVKPKYGSPKHDLF-VKLIKGDAKDGVSGIK 205


>gi|260878756|ref|ZP_05891111.1| exonuclease [Vibrio parahaemolyticus AN-5034]
 gi|308091187|gb|EFO40882.1| exonuclease [Vibrio parahaemolyticus AN-5034]
          Length = 280

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 25/218 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLS------RKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M K   L L D   F ++A  AT +         ++ GL  N    F +++ + ++  RK
Sbjct: 1   MSKIKKLGLFDLDIFAFQA-NATAMEEVFLQNGNEYIGLMTNLTQAFDSVVNR-IEELRK 58

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           E       +        +R ++ P YK NR  + + +  Q  L +  ++ +         
Sbjct: 59  ELKLDVVIMCL-TDDHNWRKDVLPTYKENRKGVRKPVGLQ-ELKQRLSEHYE--TYIRPS 114

Query: 115 FEADDIIATYTYIAE-KEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKK 171
            EADD++       +        IIS DKD+  L +    +Y+  K+     +       
Sbjct: 115 LEADDVMGILATWDKFYPDHRKIIISEDKDMKTLPA---WIYNPAKDFEPWFNPIEDADH 171

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           + +        Q L GD+ D   G P IG  TA+ LL+
Sbjct: 172 FHLC-------QTLAGDTTDGYAGCPSIGMDTASQLLK 202


>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
 gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
          Length = 382

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 29/213 (13%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               +T +     + Q V +LE +   +  +  D++  F  K   I I            
Sbjct: 5   PQQPFTFVNTPSGLAQVVHRLERVPVVAVDLEADSLHHFTEKVCLIQIGV---------- 54

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
                       + D+   + L    LS LK FF +   +K+ H   YD   L+R +GI+
Sbjct: 55  ------------NGDAFLIDPLALSDLSSLKPFFADPGVIKVLHGADYDVRSLYRDFGIT 102

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           + G  D  + S  L  G  S  +  +  +    T     K  +      +    ++  +A
Sbjct: 103 ITGLFDSEIASRFL--GVQSTGLNDVVNRRFGVTMD---KGCRKQDWTQRPLPEKMLSYA 157

Query: 543 IENSNVILQLWLLLRPKLIVEK-LLHVYERLDK 574
             +   ++ L+  L+ +L        V E  + 
Sbjct: 158 ALDVRYLVDLYHQLQNELQQMGRAEWVAEECEL 190


>gi|209879882|ref|XP_002141381.1| Flap endonuclease 1 [Cryptosporidium muris RN66]
 gi|317374886|sp|B6AFP1|FEN1_CRYMR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|209556987|gb|EEA07032.1| Flap endonuclease 1, putative [Cryptosporidium muris RN66]
          Length = 472

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 101/314 (32%), Gaps = 61/314 (19%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             +  +D S ++Y+   A    S         G   + I+G   ML + ++         
Sbjct: 28  GRIIAIDASMWMYQFLAAIREGSQWGNLTNEAGESTSHISG---MLSRTIRLLEAGIKP- 83

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEML-----------------------LPQLP 96
               +FD      + E     K  R K  + L                         Q  
Sbjct: 84  --VFVFDGEPPELKMEELMKRKERREKAQQELEKAQEEGDTETIRKQLIRTIKITKEQSD 141

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
            V+   +  GIP IE    EA+   A        EG    + + D D +   +P    + 
Sbjct: 142 DVKYMLKLLGIPVIEATS-EAEAQCAELCK----EGLVYGVATEDADSLTFGTPLVIRHL 196

Query: 157 TVKEEK--------------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
              + K              I +  V+   G+  ++ V L  L G   D    I GIG  
Sbjct: 197 NFSDGKFSDSKGNSKNSLQVIKLSTVLSDLGLSMQQFVDLCILCG--CDYCGTIRGIGAL 254

Query: 203 TAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
           TA  LL+++ ++E I+    + K       +    +  ++ R+L      +      + L
Sbjct: 255 TAYKLLKKHKDIETIINELDKNKHP-----LPMSFDYIKV-RELFTNPNVIKAKEFRDKL 308

Query: 263 ILEDCNGPRLISFL 276
              + N   L  +L
Sbjct: 309 KWTNPNLEGLSEWL 322


>gi|312082398|ref|XP_003143428.1| flap endonuclease-1 [Loa loa]
 gi|307761410|gb|EFO20644.1| flap endonuclease-1 [Loa loa]
          Length = 345

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 21/191 (10%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             Q    +      GIP ++    EA+   A         G     +S D D +   SP 
Sbjct: 135 KEQNEEAKRLVTLMGIPVLDAPC-EAEAQCAALAR----AGKVFATVSEDMDALTFGSPI 189

Query: 152 TCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
                   E      +++++  V+K +G+  E+ + L  L G   D +  I GIG K A 
Sbjct: 190 LLRQMIASEAKKLPVKEMNLNQVLKDFGMNMEQFIDLCILLG--CDYVSTIRGIGPKKAF 247

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
            L++++  +EN+L    + K    +    +Y E  RL  +      DV +      L+ +
Sbjct: 248 ELIKKHECIENVLKIIDQTKYAIPKNW--QYKEARRLFLE-----PDV-MDCENVELVWK 299

Query: 266 DCNGPRLISFL 276
           + +   ++ FL
Sbjct: 300 EPDVEGIVQFL 310


>gi|242014497|ref|XP_002427926.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
 gi|212512410|gb|EEB15188.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
          Length = 380

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 21/185 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP IE    EA+   A         G      + D D +   S     + T
Sbjct: 141 CKELLKLMGIPYIEAPC-EAEAQCAALVK----AGKVYATATEDMDALTFGSNIILRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++I ++ V+ +  +   + + L  L G   D    I GIG K A  L++++
Sbjct: 196 FSEARKMPVQEIYLDKVLAELEMTQNEFIDLCILLG--CDYCDSIKGIGPKRAIELIKKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            +LE IL N    K     + I + A    ++        DV     +E L   + +   
Sbjct: 254 KSLEKILENLDSGKYVVPEDWIFQEARKLFIN-------PDVCDASNVE-LKWNEPDTEG 305

Query: 272 LISFL 276
           L+ +L
Sbjct: 306 LVKYL 310


>gi|50286981|ref|XP_445920.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525226|emb|CAG58839.1| unnamed protein product [Candida glabrata]
          Length = 1284

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 89/269 (33%), Gaps = 44/269 (16%)

Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI---- 761
             T+T R         +   K  +G +++    +P     + AD    EL I +      
Sbjct: 676 MGTVTRRAVESTWLTASNAKKNRIGSELKAQICAPEGYSFVGADVDSEELWIASLFGDSV 735

Query: 762 ------AKITPLYQVF--ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813
                   I  +          D+H   A +I   +        R  AK  N+  IYG  
Sbjct: 736 LRIHGGTPIGWMCLEGTKAEGSDLHTKTA-QILSCD--------RNEAKIFNYGRIYGAG 786

Query: 814 PFRLATQLR-----IPRSEAADYIKRYFH-------RFPGIHEYI---------EKTKNF 852
               +  L+     +   EA +   + +        R     ++           K ++ 
Sbjct: 787 VKFASQLLKKFNPTLSEKEAKETAVKLYESTKGKTKRSKVFKKFWYGGSESILFNKLESI 846

Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912
             Q+  +  + G  I    +     +   +  R  +N  IQ S  D       S++  + 
Sbjct: 847 AEQDNPMTPVLGCGITNSLMKQNLKANSFLPSR--VNWAIQSSGVDYLHLLCCSMNYLIS 904

Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTAS 941
            + +  ++++ IHDE+ + V +++    +
Sbjct: 905 MYNIEARLIISIHDEIRYLVADKDKYKLA 933


>gi|318042597|ref|ZP_07974553.1| ribonuclease [Synechococcus sp. CB0101]
          Length = 234

 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 82/218 (37%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +++     +W + L    + +       +     +   + IS  DQ +    ++     +
Sbjct: 31  VLDGDLTPEWHELLGRSSALAVDTEAMGLVHGRDRLCLVQISD-DQDNVCCIRILRGQSE 89

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
             +                   LK+  E+   +K+ H  ++D   L    GI++      
Sbjct: 90  APL-------------------LKQLMEHSGIVKVFHFARFDVAALGEGLGIAVNPLFCT 130

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +  + H +  +  +       E+ K  +SS    ++++S++Q+  +A  +  
Sbjct: 131 KVASRLARTYTNRHGLKELVSELCGV---ELDKGAQSSDWGRVEELSETQLA-YAANDVR 186

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E+ L + +R     I V+++++ 
Sbjct: 187 YLLPARERLTQMLEREERLDLAQRS-FQCIPVIAELDR 223


>gi|302796239|ref|XP_002979882.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
 gi|302813529|ref|XP_002988450.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
 gi|300143852|gb|EFJ10540.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
 gi|300152642|gb|EFJ19284.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
          Length = 377

 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 90/284 (31%), Gaps = 50/284 (17%)

Query: 25  LLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKAN 83
            +     G   + + G F   +  L    +          +FD      +        A 
Sbjct: 49  EMLTNEAGEITSHLQGMFTRTVRLLESGMKPVY-------VFDGKPPELKKAELVKRGAR 101

Query: 84  RPKIPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDI 120
           R +  E L   +                          +   +  GIP IE    EA+  
Sbjct: 102 REEATEGLTEAIEKGEVADIEKYSKRTVKVTKQHNEDCQKLLRLMGIPVIEAPC-EAEAE 160

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGI 174
            A     A+K  +AV   S D D +   SP    +      +        I   +++  +
Sbjct: 161 CAALCK-ADKVVYAV--ASEDMDSLTFGSPRFLRHLMEPASRKIPVMEFQISTALQELNL 217

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             ++ + L  L G   D    I GIG +TA  L++++  LE +L N +     K R  I 
Sbjct: 218 SMDQFIDLCILCG--CDYCDTIRGIGPQTALKLIRQHSTLEAVLENLN-----KDRYQIP 270

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           E       +R+L      +P    L  L     +   L  FL  
Sbjct: 271 ESWPYQE-ARRLFKEPIVLP-DEELPELKWNAPDEEGLKKFLVE 312


>gi|262155786|ref|ZP_06028909.1| exonuclease [Vibrio cholerae INDRE 91/1]
 gi|262030377|gb|EEY49018.1| exonuclease [Vibrio cholerae INDRE 91/1]
          Length = 286

 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 25/218 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL----LSRKHD--GLPVNAIAGFCNMLWKLLQNSRK 54
           M K   L L D   F ++A  AT +    L    +  GL  N    F N +   +   R 
Sbjct: 1   MNKTRRLGLFDLDIFAFQA-NATAMEEVFLQNGDEFIGLMTNMTQAF-NSVVSRIDEIRT 58

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +       +        +R ++ P YK+NR  + + +     L R   + +         
Sbjct: 59  QLKLDKVVMCL-TDDHNWRKDVLPTYKSNRKDMRKPVGL-AELKRRLGEHYE--TYLRPS 114

Query: 115 FEADDIIATYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKK 171
            EADD++            +   +IS DKD+  L      LY+  K+    ++ E     
Sbjct: 115 LEADDVMGILATWKGFHPDYRKIVISEDKDMKTLP---VWLYNPAKDFEPWLNSEEDADF 171

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           + +        Q L GD  D   G P IG  TA  +L+
Sbjct: 172 FHLC-------QTLAGDVTDGYSGCPSIGMDTAKQMLK 202


>gi|159482777|ref|XP_001699444.1| hypothetical protein CHLREDRAFT_152280 [Chlamydomonas reinhardtii]
 gi|158272895|gb|EDO98690.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 440

 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 7   LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           L +VDG+    RA+Y      R     G+P +        L   +++ R     +  AV+
Sbjct: 48  LLVVDGNYLANRAYYGYGNGQRLATSKGVPTSITYSVVRTLRAAIRSVR----PTALAVV 103

Query: 65  FDYPAVTFRNEI 76
           FD+   TFR  +
Sbjct: 104 FDHRGPTFRAAL 115



 Score = 45.8 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI----LINASRIKQKKRR 230
             E  V  +        N+ G+ GIG K A  LL E+G+LE +    L  A+     KRR
Sbjct: 286 DEEFYVDFR--------NLQGVTGIGPKGAVQLLTEHGDLEGVWRAALEGAAGGIAPKRR 337

Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282
             +      A+    L  +   +        L   +    RL   L+ L   
Sbjct: 338 AALQADWPAAQ--YTL-TMARVLGSPGAPSGLPPREVLPDRL---LQRLALR 383


>gi|85714031|ref|ZP_01045020.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
 gi|85699157|gb|EAQ37025.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
          Length = 206

 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 26/185 (14%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 GSA+    T  +     +   + +S  D   D       I I    H + +   
Sbjct: 14  DLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSAD------VIQIARGQHDAPN--- 64

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGR 500
                      LKK   +   +KI H  ++D   LH  +G+  R      + S +  +  
Sbjct: 65  -----------LKKLLGDPAIVKIFHFARFDLAALHNAFGVMPRPVYCTKIASRLTRTYT 113

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPK 559
             H +  + ++ LS      L  ++ S     ++ S  Q  +A  +   +  L   L   
Sbjct: 114 DRHGLKDLVREALSID----LSKQQQSSDWGSLALSDAQLAYAASDVLHLHALRDKLDAM 169

Query: 560 LIVEK 564
           L  E 
Sbjct: 170 LARED 174


>gi|327298531|ref|XP_003233959.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
 gi|326464137|gb|EGD89590.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
          Length = 1121

 Score = 68.5 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 94/272 (34%), Gaps = 36/272 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    I++ 
Sbjct: 779  KKDRRDADEVSQIMVTECQQLLRLFGLPYITAP-MEAEAQCAELVTLGLVDG----IVTD 833

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D    +   T +Y  +  +   +E      + K++ +  +K++    L G   D   G
Sbjct: 834  DSDTF--LFGGTRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLG--SDYTEG 889

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQK---------KRRENILEYAETARL---- 242
            IPGIG  TA  +L E+ +LE      S+++             R+   +      L    
Sbjct: 890  IPGIGPVTALEILTEFSDLEEFRDWWSQVQLGYKIPDDPHEGFRKKFKKNVTKLFLPPGF 949

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
             ++ +     +  +       I    +   +  F        L+  V  + +     + P
Sbjct: 950  PNKAVEKAYLEPEVDSDPSGFIWGVPDLDAVRQF--------LMATVGWSPERTDEVLVP 1001

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
            V+ D+N  E +G                 F+ 
Sbjct: 1002 VIRDVNRREQEGTQSNITGFFQGPQGAGAFAP 1033


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 11/131 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTY-----IAEKEGFAVTIISTDKDLMQLVSPTT 152
            +   +  G+P IE    EA+   A             E          K L  L+ P++
Sbjct: 158 CKKLLRLMGVPVIEAPS-EAEAQCAALCKSGKVYAVASEDMDSLTFGASKFLRHLMDPSS 216

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                +   + DI  ++++  +  ++ + L  L+G   D    I GIG +TA  L++++G
Sbjct: 217 RKIPVM---EFDITKILEELNLTMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHG 271

Query: 213 NLENILINASR 223
           ++ENIL N +R
Sbjct: 272 SIENILENINR 282


>gi|296818415|ref|XP_002849544.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
 gi|238839997|gb|EEQ29659.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
          Length = 1066

 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 100/299 (33%), Gaps = 36/299 (12%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K +R    E+    +   +   + FG+P I     EA+   A    +   +G    I++ 
Sbjct: 684 KKDRRDADEVSHIMVTECQQLLRLFGLPYITAP-MEAEAQCAELVSLGLVDG----IVTD 738

Query: 141 DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           D D    +   T +Y  +  +   +E      + K++ +  +K++    L G   D   G
Sbjct: 739 DSDTF--LFGGTRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLG--SDYTEG 794

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQK---------KRRENILEYAETARL---- 242
           IPGIG  TA  +L E+ +LE      S+++             R+   +      L    
Sbjct: 795 IPGIGPVTALEILTEFSSLEEFRDWWSQVQLGNKIPDDTHAAFRKKFKKNLTKLFLPPGF 854

Query: 243 -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
             + +     +  +            +   +  F        L+  +  + +     + P
Sbjct: 855 PDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQF--------LMATIGWSPERTDEVLVP 906

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360
           V+ D+N  E +G                 F+       K   E+   +L  +   + + 
Sbjct: 907 VIRDVNRREQEGTQSNITGFFQGPQGAGAFAPRQRTAGKSRMEKAFGRLRNQAEARQTT 965


>gi|145349446|ref|XP_001419144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|317374919|sp|A4S1G4|FEN1_OSTLU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|144579375|gb|ABO97437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 389

 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 22/197 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V       G+P  E    EA+   A         G    + + D D +   +P       
Sbjct: 142 VMKLASLLGVPVFEAPC-EAEASCAAMCK----AGLVWAVATEDMDTLTFAAPRLARNLM 196

Query: 158 VKEE------KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             +       + D + V+   G+ PE+ + +  L G   D    I GIG KTA  L++E+
Sbjct: 197 APKSQDKPVLEFDYDKVLAGLGLTPEQFIDMCILCG--CDYCDTIRGIGPKTALKLIKEH 254

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G++E IL      K    ++     A     + ++        +      L  +  N   
Sbjct: 255 GSIEKILEEIDTEKYPPPQDWDFAGARELFKNPEV--------MDTTGIALSWKAPNEEG 306

Query: 272 LISFL-KALEFTKLINR 287
           LI FL K  +F +   R
Sbjct: 307 LIDFLVKEKQFNEERVR 323


>gi|221113143|ref|XP_002159259.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 404

 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 24/187 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +      G+P I+    EA+   A         G  V  + S D D +   +     + 
Sbjct: 167 CKELLDLMGVPYIDAPC-EAEAQCAELVK-----GGKVYAMGSEDMDSLTFGANILLRHL 220

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E      ++     V+++  +  E+ V L  L G   D    I G+G  TA  L++E
Sbjct: 221 TFSEARKMPIQEFHYSKVLEELELTKEQFVDLCILLG--CDYCASIKGVGPVTAMKLIKE 278

Query: 211 YGNLENILINASRIKQKKRREN-ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           + N+E I+ +     +    EN + E +    L  + V     V        L  ++ + 
Sbjct: 279 HRNIEGIIKHLQSKDKYTIPENWMYEDSRLLFLEPE-VTPADQV-------QLKWKEPDE 330

Query: 270 PRLISFL 276
             L+ ++
Sbjct: 331 EGLVEYM 337


>gi|88807852|ref|ZP_01123363.1| putative ribonuclease D [Synechococcus sp. WH 7805]
 gi|88787891|gb|EAR19047.1| putative ribonuclease D [Synechococcus sp. WH 7805]
          Length = 214

 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 72/218 (33%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +++    ++W ++     + +       +     +   + I                   
Sbjct: 13  VLDGDLNEEWSERYARSTALAVDTEAMGLIHGRDRLCLVQIC------------------ 54

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
                 Q +  +  L +     LK   E     K+ H  ++D   L    GI +      
Sbjct: 55  --DDKDQVACIRIALGQTEAPRLKALMEATTIEKVFHFARFDVAALATGLGIRVNPLFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    +D+++D Q+  +A  ++ 
Sbjct: 113 KVGSRLARTYTPRHGLKDLVMELVGV---ELDKQAQSSDWGRVDELTDVQLA-YAANDAR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E    + +      I V+S ++ 
Sbjct: 169 YLLAARRQLEVMLRREGRWELAQSC-FQCIPVMSDLDR 205


>gi|296204096|ref|XP_002749184.1| PREDICTED: DNA polymerase subunit gamma-1 [Callithrix jacchus]
          Length = 1229

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 125/430 (29%), Gaps = 120/430 (27%)

Query: 617  SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676
             G  +N+ SP       F K   P             A     +      I K I  WR 
Sbjct: 746  DGNNYNVGSP-------FAKDFLPKMEDGTLQAGPGGASGPRAL-----EINKMISFWRN 793

Query: 677  LSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTGRLASLEPNLQN 722
              K I S     LP     R    H  Y               A T+T R         +
Sbjct: 794  AHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITRRAVEPTWLTAS 853

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVF------ 771
                  +G +++    +PP   L+ AD    EL I      AH A +      F      
Sbjct: 854  NARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHGCT-AFGWMTLQ 912

Query: 772  ---ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR----LATQLRI 823
                   D+H   A  +            R HAK  N+  IYG   PF     +    R+
Sbjct: 913  GRKSRGTDLHSKTATTV---------GISREHAKVFNYGRIYGAGQPFAERLLMQFNHRL 963

Query: 824  PRSEAADYIKRYFHRFPGIHEY-----------------------------IEKTKNFV- 853
             R EAA+  ++ +    G+  Y                             + K +    
Sbjct: 964  TRQEAAEKAQQMYAVTKGLRRYRLSEEGEWLVRELHLPVDRIEGGWISLQDLRKVQREAS 1023

Query: 854  RQNGYVETIFGRRIHYDEINSPKSSIRNIN----------------ERAAINAPIQG--- 894
            R++ + +        +      +   +  +                 RA   + +QG   
Sbjct: 1024 RKSRWKKWEVVAERAWMGGTESEMFNKLESIATSDIPCTPVLGCRISRALEPSVVQGEFM 1083

Query: 895  ----------SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS--- 941
                      SA D     ++++    E+  +  +  + IHDE+ + V EE+   A+   
Sbjct: 1084 TSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALAL 1143

Query: 942  ---QIIVHSM 948
                ++   M
Sbjct: 1144 QITNLLTRCM 1153


>gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 567

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 80/546 (14%), Positives = 153/546 (28%), Gaps = 173/546 (31%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +Q  E+A  +   +  +   L          H Y   +  +  +   +   G+ +D DL 
Sbjct: 4   AQFVEYARRDVAAMRDVVKRL--------PSHNYSGAELALWFLDQTINDRGVLVDTDLA 55

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +     + +   +L      L+G     ++ +   D L   L       T+ G      Q
Sbjct: 56  QAAIGAVERAKCTLAHRTEALTGGAVQAATQR---DALLHHL------STEHGVALPDMQ 106

Query: 656 DLEQINCGDNPII-----KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
                 C D+P++     + +   RQ S   +    +L N  ++  +   T     ++ T
Sbjct: 107 QHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRT 166

Query: 711 GRLASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTK 743
           GR A       N+P  T     I                           R   I+P  K
Sbjct: 167 GRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHK 226

Query: 744 KLISADYSQIELRILAHIAKITPLYQVF-------------------------------- 771
           KL+ AD S IE R+LA +A  TP    F                                
Sbjct: 227 KLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQ 286

Query: 772 --------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI--------------I 809
                       DI++   A  FG+  + V+ + R+  K    ++              +
Sbjct: 287 RNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAM 346

Query: 810 YGISPFRLATQLRIPRSEAAD----------------------------YIKRYFHRFPG 841
           Y I    +A Q  +P     +                            + + + +  P 
Sbjct: 347 YHIDLEAMAEQAALPPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPA 406

Query: 842 IHEYIEKTK----------NFVRQNGYVETIFGR---RIHYDEIN--------------- 873
           I  + +  +                  +   + R   R+                     
Sbjct: 407 IAAFWQALQFAATDAIGHPETAHTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGAL 466

Query: 874 --------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925
                   + K +         +    Q  + D+    M ++  +         ++L +H
Sbjct: 467 SYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAA------GYAIVLTVH 520

Query: 926 DELVFE 931
           DE++ E
Sbjct: 521 DEMITE 526


>gi|298290361|ref|YP_003692300.1| 3'-5' exonuclease [Starkeya novella DSM 506]
 gi|296926872|gb|ADH87681.1| 3'-5' exonuclease [Starkeya novella DSM 506]
          Length = 210

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 66/206 (32%), Gaps = 23/206 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
           E     +    T  ++    +   + +S  D   D   ++       S            
Sbjct: 19  ENAPFVAIDTETLGLNPHRDRLCVVQLSPGDGTADV-VQIPAGAGPGSAPN--------- 68

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSH 503
                   L+    +    K+ H  ++D  VL   +G+++       + S +  +    H
Sbjct: 69  --------LEALLTDPRITKLFHFARFDVAVLGKTFGLTVAPVWCTKIASRLTRTYTDRH 120

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            +  + ++ +     ++ K ++SS    +       ++A  +   +  L   L   L  +
Sbjct: 121 GLKELVRELIGV---DLSKQQQSSDWAAEELSEAQLQYAASDVLYLHALREKLASMLARD 177

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQ 589
               + +      +   +++++ G  
Sbjct: 178 GRTELAQSC-FEFLPTRAKLDLAGWP 202


>gi|257077017|ref|ZP_05571378.1| flap endonuclease-1 [Ferroplasma acidarmanus fer1]
          Length = 339

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 79/216 (36%), Gaps = 44/216 (20%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +      G+P ++    E +   +  + +   +     +IS D D + L +       T+
Sbjct: 136 KKLLDMMGVPWVQAPS-EGEAQASYMSKVGAVDS----VISQDYDCLLLGARRVLRNFTM 190

Query: 159 KE---------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
                            E ID++  +   GI  ++++ +  L G   D  PGI GIG KT
Sbjct: 191 YGRRRISGTGKFINITPEIIDLKENLDNLGITQDQLIGIGILVG--TDFNPGIRGIGAKT 248

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
              L+++YG++E++L         K++   ++  +  +          + P+      L 
Sbjct: 249 GLSLIKKYGDIESVL---------KQKNKTIDNLDEIK------EFFLNPPVE-DTGELK 292

Query: 264 LEDCNGPRLISF------LKALEFTKLINRVATTYD 293
                  ++I +              +++R+   Y 
Sbjct: 293 FAPPYREKIIEYLCAEHSFSENRINSILDRIEKNYS 328


>gi|292656986|ref|YP_003536883.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
 gi|291370541|gb|ADE02768.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
          Length = 326

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 91/259 (35%), Gaps = 54/259 (20%)

Query: 7   LFLVDGSSFIYRAFY-------ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +  VD  +++YR  Y        +       +G  V  + G    + K  ++   +    
Sbjct: 24  VVAVDAHNWLYR--YLTTTVKWTSSETYTTSEGEEVANLVGIVQGIPKFFEH---DLTP- 77

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPE-----------------MLLPQ------LP 96
               +FD      +++     +  R K  E                     Q        
Sbjct: 78  --VFVFDGGVTEMKDDEVAKRREQREKAEERLEEAREAGDAVEAARMEARTQRLTETIQD 135

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
             R       +P +E    E +   +      + +     + S D D +   +P T    
Sbjct: 136 TSRELLSLLDVPVVEAPA-EGEAQASYMARKGDAD----YVGSEDYDTLLFGAPYTLRQL 190

Query: 157 TVKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           T K   E +D++  + K  I  E++V +  L G   D   GI GIG KTA  ++ E+G+L
Sbjct: 191 TSKGNPELMDLDATLDKHDITYEQLVDIAMLCG--TDFNEGITGIGPKTAVKVVTEHGDL 248

Query: 215 ENILI-------NASRIKQ 226
            ++L        NA R+++
Sbjct: 249 WSVLEARGASIPNADRVRE 267


>gi|169596320|ref|XP_001791584.1| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
 gi|160701280|gb|EAT92412.2| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
          Length = 1279

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 102/294 (34%), Gaps = 46/294 (15%)

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
            V FD    + R +     K +R    E+    +   +     FG+P I     EA+   A
Sbjct: 898  VNFDEELKSLRAQQ----KKDRRDADEVTQSMITECQHLLTLFGLPYITAP-MEAEAQCA 952

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPE 177
               ++   +G    I++ D D    +   T +Y  +       E      ++ ++ +  +
Sbjct: 953  ELVHLGLVDG----IVTDDSDTF--LFGGTRVYKNMFNAAKFVECYLANDLVSEFSLTRD 1006

Query: 178  KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
            KM+ +  L G   D   GIPGIG  TA  LL E+ +L++     + ++     +      
Sbjct: 1007 KMIAIAQLLG--SDYTTGIPGIGPVTALELLAEFPDLQDFKDWWTGVQNNTIPK--DADK 1062

Query: 238  ETARLSR------------------KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279
             +A   R                  ++        +    E       +   L +FL   
Sbjct: 1063 NSAFRRRFRRGQATKLFLPPGFPDQRVADAYLHPEVDSDPEPFQWGVPDLAALRTFLS-- 1120

Query: 280  EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
                  +++  +++     + PV+ D+N  E +G         +  +    F+ 
Sbjct: 1121 ------SQIGWSWERTDEVLVPVIRDMNRREKEGTQANITRFFEGGVGAGAFAP 1168


>gi|58040278|ref|YP_192242.1| ribonuclease D [Gluconobacter oxydans 621H]
 gi|58002692|gb|AAW61586.1| Ribonuclease D [Gluconobacter oxydans 621H]
          Length = 214

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 61/193 (31%), Gaps = 19/193 (9%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
                 +     +    T  ++    +   + +S  D +             +S+     
Sbjct: 13  DLPDDFDLGPLVAIDTETMGLNPHRDRLCLVQLSAGDGE-----AHLVQIKPVSMGGRGY 67

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD 497
                         LK    ++   K+ H  ++D  VL   + I++       + + ++ 
Sbjct: 68  DCPN----------LKALLTDDSVTKLMHFARFDVAVLQNAFNITIPSVICTKIAARLVY 117

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           +    H +A + +  L     EI K ++SS    +        +A  +   +  LW  L 
Sbjct: 118 TFTDRHGLAYLCRDLLGV---EISKHQQSSDWGAQTLTPDQLRYAASDVLYLHALWDKLE 174

Query: 558 PKLIVEKLLHVYE 570
             LI E    + +
Sbjct: 175 AMLIRENRRDLAQ 187


>gi|225558184|gb|EEH06469.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus G186AR]
          Length = 1159

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 100/292 (34%), Gaps = 36/292 (12%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K  R    E+    +   +   + FG+P I     EA+   A    +   +G    +++ 
Sbjct: 814  KKARRDADEVSHIMISECQELLRLFGLPYITAP-MEAEAQCAELLSLGLVDG----VVTD 868

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +  +   +E      + K++ +   K++    L G   D   G
Sbjct: 869  DSDIF--LFGGTRVYKNMFNQAKFVECYISNDLEKEYNLDRNKLIQFAHLLG--SDYTEG 924

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQKKR---------RENILEYAETARL---- 242
            IPG+G  +A  +L E+  LE+     S+++   +         R+   +      L    
Sbjct: 925  IPGVGPVSALEILTEFPTLEDFRDWWSQVQMGAKLPEDSHSIFRKKFKKNVTKLFLPPGF 984

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              +++     +  +            +   L  F        L++ +  + +     + P
Sbjct: 985  PDKRVDTAYLEPKVDSDPSAFQWGVPDLNALRQF--------LMSTIGWSQERTDEVLVP 1036

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            V+ D+N  E +G                 F+       K   E+   +L  +
Sbjct: 1037 VIRDMNRREQEGTQSNITNFFQGPQGAGAFAPHRRPDGKSRMEKAFSRLRHQ 1088


>gi|161622641|ref|YP_001595368.1| RNaseH ribonuclease [Enterobacteria phage JS98]
 gi|52139847|gb|AAU29219.1| RNaseH ribonuclease [Enterobacteria phage JS98]
          Length = 315

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM-------LLP 93
             N + K +++ +K+        + +  +  +R      YK NR K  +        L  
Sbjct: 53  VLNSIKKNIKDFKKQGYNQLIICVDNSKSGYWRRRYSSYYKKNRAKARDESPFDWEGLFT 112

Query: 94  QLPLVRLATQA-FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPT 151
            + ++    +       + I   EADD IA  T I   +G  V I S+D D  QL   P 
Sbjct: 113 AMHIIVDELEQNMPYIVMNIDTIEADDHIAVLTRILTAKGHPVMIGSSDGDFTQLHKFPG 172

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVC--LQALTGDSIDNIPGIPGIGY 201
              +  ++++      V  K G   + ++    + + GD  DN+  I   G 
Sbjct: 173 VKQWSPMQKK-----FVKTKSG---DALLDCVTKVIKGDRKDNVASIKVRGD 216


>gi|282899306|ref|ZP_06307275.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195763|gb|EFA70691.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 209

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 72/209 (34%), Gaps = 26/209 (12%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           D +  +    D     + L +  + +    T  +     +   + +   + K        
Sbjct: 4   DDFQVVDGDLDYPTLSEYLRS-DALAVDTETMGLLPQRDRLCLVQLCNPEGKVTA----- 57

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMR 484
                      + + G+          L++  E+   +K+ H  ++D   L H   I ++
Sbjct: 58  ----------VRIAKGQTHAPN-----LQQLLESTDVVKVFHFARFDLATLRHNLKIHVQ 102

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAI 543
                 + S +  +  + H +  + Q+     + E+ KS +SS   + +S S  Q  +A 
Sbjct: 103 PVFCTKIASKLARTYTNRHGLKELVQE---LEQVELDKSSQSSDWGNPVSLSDAQLSYAA 159

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            +   +L L   L   L  E+   + +  
Sbjct: 160 NDVRYLLSLKQKLSQMLQREERWQLAQEC 188


>gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
 gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
          Length = 204

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 24/196 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                        + +    T  ++    +   + IS  D + D     +     +    
Sbjct: 6   HCGDLPDDYVPGPAIAVDTETLGLEPHRDRLCVVQISHGDGEADVVQIPKIGPEPV---- 61

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY 494
                            LK+   +    KI H  ++D  VL HR G+         + S 
Sbjct: 62  ----------------VLKRVLTDPAVTKIFHYARFDLAVLYHRLGVMPGPVYCTKVASR 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +  +    H +  + ++ L     E+ K ++SS            ++A  +   +  L  
Sbjct: 106 LARTYTDRHGLKDLVRELLGV---ELSKQQQSSDWGADTLTPAQIDYAASDVLHLHALRA 162

Query: 555 LLRPKLIVEKLLHVYE 570
            L   L  E+   + E
Sbjct: 163 KLDAMLAREERTDMAE 178


>gi|327278874|ref|XP_003224185.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Anolis
           carolinensis]
          Length = 515

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 100/348 (28%), Gaps = 58/348 (16%)

Query: 25  LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR 84
            + +  +G   + + G   M ++ ++         +   +FD      ++         R
Sbjct: 184 DMLQNEEGETTSHLMG---MFYRTIRMVENGLKPVY---VFDGKPPQLKSGELAKRIERR 237

Query: 85  PKIPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDII 121
            +  + L                              +      GIP ++  G EA+   
Sbjct: 238 TEAEKQLQEAKEAGEEENVEKFSKRLVKVTKQHNEECKKLLTLMGIPYVDAPG-EAEASC 296

Query: 122 ATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGI 174
           A            V    + D D +   SP    + T  E      ++  +  +++   +
Sbjct: 297 AALVKA-----NKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQDLSL 351

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             E+ V L  L G   D    I GIG K A  L++++ ++E I+      K       + 
Sbjct: 352 TQEEFVDLCILLG--CDYCESIRGIGPKRAVELIKQHKSIEKIIQQIDTKKYSLPENWLH 409

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRV 288
           + A+   L  ++        I      L   + N   L++F               + R+
Sbjct: 410 KEAQQLFLEPEV--------IDAEAVELKWSEPNEEELVNFMCGEKQFNEERIRNGVKRL 461

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
             +              I  +       E E       K     S + 
Sbjct: 462 NKSRQGSTQGRLDDFFKITGSITSAKRKEPEPKGSAKKKARGSGSATS 509


>gi|255543058|ref|XP_002512592.1| flap endonuclease-1, putative [Ricinus communis]
 gi|223548553|gb|EEF50044.1| flap endonuclease-1, putative [Ricinus communis]
          Length = 345

 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 24/187 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT-IISTDKDLMQLVSPT--TCL 154
            +   +  G+P IE    EA+   A            V  + S D D +   +P     L
Sbjct: 104 CKRLLRLMGVPVIEAPS-EAEAECAALCK-----SGKVYAVASEDMDSLTFGAPRFLRHL 157

Query: 155 YDTVKEE----KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
            D    +    + +   ++++  +  ++ + L  L+G   D    I GIG  TA  L+++
Sbjct: 158 MDPSSRKVPVMEFETSKILEELNLTMDQFIDLCILSG--CDYCDSIRGIGGMTALKLIRQ 215

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRK-LVMLRTDVPITIPLEHLILEDCNG 269
           +G++ENIL N ++ + +   +    Y E  RL ++ LV+   + P       L     + 
Sbjct: 216 HGSIENILENMNKERYQIPEDW--PYQEARRLFKEPLVLADEEEP------ELKWTAPDQ 267

Query: 270 PRLISFL 276
             LI+FL
Sbjct: 268 EGLITFL 274


>gi|68299734|ref|YP_249583.1| Exonuclease [Vibriophage VP4]
 gi|66473273|gb|AAY46282.1| exonuclease [Vibriophage VP4]
          Length = 287

 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 21/219 (9%)

Query: 1   MQKE--NHLFLVDGSSFIYRAFYATPLLSRKHDGL------PVNAIAGFCNMLWKLLQNS 52
           M K   NH  ++D    +Y+A  A  + ++  D +       V A       +  ++   
Sbjct: 1   MSKPLVNHALILDADYLVYQAMSAAEIETQWSDDVWTLECDHVKAWDILIGSVQTIVAK- 59

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           RK    S   + F      +R ++ P YKANR    +        V    Q     +   
Sbjct: 60  RKAWATSKIVMCF-TDENNWRKDVLPTYKANRKATRKP-TGYRAFVNKVMQYPEWESFLR 117

Query: 113 QGFEADDIIATYTYIAEKEGFAV-TIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK 171
              E DD +          G    T++S DKD    + P    + T  E    I+ + ++
Sbjct: 118 PNLEGDDCMGILGTRPSLVGAKTSTLVSCDKDFN--IIPCEFFWLTTGE----IKTITEE 171

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
                ++   LQ + GD  D   GI G+G  TA   L+E
Sbjct: 172 ---DADRWHMLQTIMGDVTDGYSGIKGMGKDTALAFLEE 207


>gi|325171301|ref|YP_004251272.1| exonuclease [Vibrio phage ICP3]
 gi|323512007|gb|ADX87469.1| exonuclease [Vibrio phage ICP3]
 gi|323512054|gb|ADX87515.1| exonuclease [Vibrio phage ICP3_2009_B]
 gi|323512103|gb|ADX87563.1| exonuclease [Vibrio phage ICP3_2009_A]
 gi|323512152|gb|ADX87611.1| exonuclease [Vibrio phage ICP3_2008_A]
 gi|323512200|gb|ADX87658.1| exonuclease [Vibrio phage ICP3_2007_A]
          Length = 291

 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 21/219 (9%)

Query: 1   MQKE--NHLFLVDGSSFIYRAFYATPLLSRKHDGL------PVNAIAGFCNMLWKLLQNS 52
           M K   NH  ++D    +Y+A  A  + ++  D +       V A       +  ++   
Sbjct: 1   MSKPLVNHALILDADYLVYQAMSAAEIETQWSDDVWTLECDHVKAWDILIGSVQTIVAK- 59

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           RK    S   + F      +R ++ P YKANR    +        V    Q     +   
Sbjct: 60  RKAWATSKIVMCF-TDDHNWRKDVLPTYKANRKATRKP-TGYRAFVNKVMQYPEWESFLR 117

Query: 113 QGFEADDIIATYTYIAEKEGFAV-TIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK 171
              E DD +          G    T++S DKD   +  P    + T  E    I+ + ++
Sbjct: 118 PNLEGDDCMGILGTRPSLVGAKTSTLVSCDKDFNTI--PCEFFWLTTGE----IKTITEE 171

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
                ++   LQ + GD  D   GI G+G  TA   L+E
Sbjct: 172 ---DADRWHMLQTIMGDVTDGYSGIKGMGKDTALAFLEE 207


>gi|225682262|gb|EEH20546.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb03]
          Length = 1233

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 94/273 (34%), Gaps = 38/273 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    +++ 
Sbjct: 889  KKDRRDADEVSHIMVSECQELLRLFGLPYITAP-MEAEAQCAELVSLGLVDG----VVTD 943

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +  +   +E      + K++ +   K++    L G   D   G
Sbjct: 944  DSDIF--LFGGTRVYKNMFNQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLG--SDYTEG 999

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQKKR---------RENILEYAETARL---- 242
            IPG+G  TA  +L E+  LE+     S+++   +          +   + A    L    
Sbjct: 1000 IPGVGPVTALEILTEFSTLEDFRDWWSQVQMGAKLPDGSHSAFWKKFKKNATKLFLPPGF 1059

Query: 243  --SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              SR +     +  +            +   L  F        L+  V  T +     + 
Sbjct: 1060 PDSR-VDTAYLEPEVDSDPSAFQWGVPDLNALRQF--------LMATVGWTQERTDEVLV 1110

Query: 301  PVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
            PV+ D+N  E +G                 F+ 
Sbjct: 1111 PVIRDMNRREQEGTQSNITNFFQGPQGAGAFAP 1143


>gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 203

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 77/212 (36%), Gaps = 25/212 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                   E  G  +    T  ++    K   +  S  + +             L    +
Sbjct: 7   QNDLPDNFELEGDIAIDTETMGLNLHRDKLCLLQFSNGNGEAH-----------LVHFVN 55

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYV 495
           QD T  N         LK    ++   KI H  ++D   + +Y  I +       + S +
Sbjct: 56  QDYTAPN---------LKALLLDKTRCKIFHFARFDLASIKQYLSIDLENIFCTKISSKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +   +H +  + ++ L+     I K ++SS        S+ +E+A ++   + QL  +
Sbjct: 107 VRTYTDNHGLKDLCRELLNIN---ISKQQQSSYWGTDNLSSEQKEYAAKDVLYLHQLKDM 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           L+  L+ E  L +   +    +   + +++ G
Sbjct: 164 LQKMLLRENRLELAHDI-FRFLPTRANLDLIG 194


>gi|317376194|sp|D1ZT73|FEN1_SORMK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|289613971|emb|CBI59205.1| unnamed protein product [Sordaria macrospora]
          Length = 394

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 70/187 (37%), Gaps = 20/187 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   +P    + T
Sbjct: 141 CQKLLKLMGIPYIVAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFHTPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I  + V++  G+  ++ V L  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEQRKEPIQEIHTDKVLEGLGMDRKQFVDLCILLG--CDYLDPIPKVGPSTALKLIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           G LE ++         K R  I E    E A   R L       P   PL     E  + 
Sbjct: 254 GTLEEVVEWMK--ADPKGRYQIPEDWPFEDA---RALFFEPDVRPADDPLCDFKWEKPDI 308

Query: 270 PRLISFL 276
             L+ FL
Sbjct: 309 EGLVQFL 315


>gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01]
 gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01]
          Length = 637

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 12/132 (9%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI----FIDLS------VHTSQDST 440
           +F + T  +D      IA+    +  K     +V          +          + +  
Sbjct: 455 AFDLETTGLDPEKDAIIALGAVHILGKTVLRHEVFEALVNPGRPIPKASTEVHGLTWEML 514

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
            +    +E+L   + F E+   + + HN  +D   L R GI      D +L+SY+L    
Sbjct: 515 KEKPKLEEVLPGFRLFLED--TVLLAHNGAFDMAFLRRVGIDQPPLVDTLLLSYLLFPDL 572

Query: 501 SSHDIASIAQKW 512
             H + ++A+++
Sbjct: 573 QDHRLETLAERF 584


>gi|226289636|gb|EEH45120.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb18]
          Length = 1178

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 94/273 (34%), Gaps = 38/273 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    +++ 
Sbjct: 834  KKDRRDADEVSHIMVSECQELLRLFGLPYITAP-MEAEAQCAELVSLGLVDG----VVTD 888

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +  +   +E      + K++ +   K++    L G   D   G
Sbjct: 889  DSDIF--LFGGTRVYKNMFNQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLG--SDYTEG 944

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQKKR---------RENILEYAETARL---- 242
            IPG+G  TA  +L E+  LE+     S+++   +          +   + A    L    
Sbjct: 945  IPGVGPVTALEILTEFSTLEDFRDWWSQVQMGAKLPDGSHSAFWKKFKKNATKLFLPPGF 1004

Query: 243  --SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
              SR +     +  +            +   L  F        L+  V  T +     + 
Sbjct: 1005 PDSR-VDTAYLEPEVDSDPSAFQWGVPDLNALRQF--------LMATVGWTQERTDEVLV 1055

Query: 301  PVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
            PV+ D+N  E +G                 F+ 
Sbjct: 1056 PVIRDMNRREQEGTQSNITNFFQGPQGAGAFAP 1088


>gi|37651699|ref|NP_932573.1| RNaseH ribonuclease [Aeromonas phage 44RR2.8t]
 gi|66392019|ref|YP_238944.1| rnh RNaseH ribonuclease [Aeromonas phage 31]
 gi|34732999|gb|AAQ81536.1| RNaseH ribonuclease [Aeromonas phage 44RR2.8t]
 gi|62114856|gb|AAX63704.1| rnh RNaseH ribonuclease [Aeromonas phage 31]
          Length = 307

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 19/167 (11%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLP---- 96
            + +   ++  + E   +   + FD      +R ++   YK NR    E           
Sbjct: 50  FDTMRNNVKKFKAEYPET--IIAFDDSKDGYWRRDLAWYYKKNRSISKEESKWDWDALFG 107

Query: 97  LVRLATQAF-----GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SP 150
            +            G+  I+I   EADDIIA  T +   +G  V I S+D D  QL    
Sbjct: 108 FINKIVDEMLTVYPGVKMIKIGKTEADDIIAILTKLFTDQGRCVMISSSDSDFTQLHKFK 167

Query: 151 TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
               Y   +++ +  ++   K  +        + + GD  D + GI 
Sbjct: 168 GVKQYSPAQKKSVKPKNGSPKHDLF------YKIIKGDGKDGVAGIK 208


>gi|238481386|ref|NP_001154740.1| endonuclease, putative [Arabidopsis thaliana]
 gi|317374929|sp|O65251|FEN1_ARATH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|332006194|gb|AED93577.1| flap endonuclease-1 [Arabidopsis thaliana]
          Length = 383

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 51/282 (18%)

Query: 25  LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVT-FRNEIYPDYKAN 83
            +     G   + + G  N   +LL+   K     +   +FD       R E+   Y + 
Sbjct: 52  EMLTNEAGEVTSHLQGMFNRTIRLLEAGIK---PVY---VFDGKPPELKRQELAKRY-SK 104

Query: 84  RPKIPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDI 120
           R      L   +                          +   +  G+P +E    EA+  
Sbjct: 105 RADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATS-EAEAQ 163

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT--TCLYDTVKEE----KIDIEHVIKKWGI 174
            A      +  G    + S D D +   +P     L D    +    + ++  ++++  +
Sbjct: 164 CAALCKSGKVYG----VASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQL 219

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234
             ++ + L  L+G   D    I GIG +TA  L++++G++E IL N ++ + +   E   
Sbjct: 220 TMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEW-- 275

Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            Y E  +L ++      DV        +     +   ++ FL
Sbjct: 276 PYNEARKLFKE-----PDVITDEEQLDIKWTSPDEEGIVQFL 312


>gi|296115075|ref|ZP_06833717.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
 gi|295978412|gb|EFG85148.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
          Length = 215

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 62/184 (33%), Gaps = 22/184 (11%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G+ +    T  ++    +   + +S  D                  H             
Sbjct: 25  GAVAVDTETMGLNPHRDRLCLVQLSDGDG-----------------HAHLVQVPAGATAA 67

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
           +  + L     +    K+ H  ++D  +L + +GI++       + S ++ +    H +A
Sbjct: 68  DFPNMLA-VLTDPSVTKLMHFARFDVAILQYTFGITVAPCICTKIASKLVRTYTERHGLA 126

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            + ++ L     E+ K ++SS         +   +A  +   +  LW  L   L+ E   
Sbjct: 127 HLCRELLGV---ELSKQQQSSDWGAPDLTPEQMTYAASDVLYLHALWARLEALLVREGRR 183

Query: 567 HVYE 570
            + +
Sbjct: 184 ELAQ 187


>gi|148555811|ref|YP_001263393.1| 3'-5' exonuclease [Sphingomonas wittichii RW1]
 gi|148501001|gb|ABQ69255.1| 3'-5' exonuclease [Sphingomonas wittichii RW1]
          Length = 205

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 67/215 (31%), Gaps = 24/215 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
             +         G  +    T  +     +   + IS  D + D          D +   
Sbjct: 6   HQEDLPADALGPGPVAVDTETMGLITPRDRLCLVQIS--DGRGDEHLVRFAPGSDYAAPN 63

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSY 494
                            L+    +   LK+ H  ++D   +  Y G+           S 
Sbjct: 64  -----------------LRAVLADPARLKLYHFARFDLAAIRHYIGVMAAPVYCTKTASR 106

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + ++ L    +E+ K ++SS           +++A  +   +  +  
Sbjct: 107 LIRTYTDRHGLKELVRELLG---QEVSKQQQSSDWGAPDLSEAQKDYAASDVRYLHAMRT 163

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +L  +L  E    + +      +   +++++ G  
Sbjct: 164 ILDERLAREGRTALAQAC-FDFLPARAELDLAGWP 197


>gi|148807575|gb|ABR13588.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 173

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 16/171 (9%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIVNEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQI 753
                +TGR+    PNL  +P +    G++ R  +  P   KLI  D   +
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIGCDARGL 173


>gi|254581574|ref|XP_002496772.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
 gi|238939664|emb|CAR27839.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
          Length = 1030

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 103/294 (35%), Gaps = 43/294 (14%)

Query: 74   NEIYPD-YKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132
            +E+Y    K  R    E+    +  V+     FG+P I     EA+   AT       +G
Sbjct: 750  DELYEQQTKDKRDS-DEVTADMITDVQDLLSRFGVPYITAP-MEAEAQCATLMRDRLVDG 807

Query: 133  FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGD 188
                +I+ D D+  L        +   E    E  D E + K  G+    M+ L  L G 
Sbjct: 808  ----VITDDSDVF-LFGGNKVYKNMFSERNYVEYYDAESIYKNLGLDRNGMIELAQLLG- 861

Query: 189  SIDNIPGIPGIGYKTAALLLQEYGNLENILI--NASRIKQKKRRENILEYAETARLSRKL 246
              D   GI G+G  +   ++ E+G+LE      N  +  +KK+ +   E      L R+L
Sbjct: 862  -SDYTNGIKGMGPVSGMEVIAEFGSLEEFRKWHNEGQFDKKKQEQ---ENKFQKDLRRRL 917

Query: 247  VML----------------RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290
            V                    +  +       +    +   L SF K         +V  
Sbjct: 918  VKNEVVLDENFPSETVKNAYLNPEVDNDKTEFVWGTPDLDMLRSFFKR--------KVGW 969

Query: 291  TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
              +     + P++ D+N  +    +  TE      I+  +  +L  + S  + +
Sbjct: 970  PQEKTDEVLVPLIRDMNKRKKSKQSTITEFFPREYIQGQRNLNLGKRLSTASGK 1023


>gi|24215616|ref|NP_713097.1| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45657025|ref|YP_001111.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24196771|gb|AAN50115.1|AE011455_9 ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45600262|gb|AAS69748.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 212

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 25/205 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           ++ +     +       ++    +   + I                       ++  S  
Sbjct: 23  EEYKLDDRLAVDCEMMGLNPRRDRLCVVQIC--------------------DSSNNVSLV 62

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGR 500
           +    ++    LK  FEN   +KI H  + D L L  R GI+++      + S +  +  
Sbjct: 63  QILPDQKEAPLLKSLFENPEIVKIFHFARMDSLFLRYRLGINLQNVFCTKIASKLARTYT 122

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +  + +++     + I K  +SS    KI      E+A  +   ++ L   L   L
Sbjct: 123 DKHGLKDLIKEF---YDEVIDKKNQSSDWGKKILTKDQIEYASGDVKYLISLEQKLTEIL 179

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEI 585
           + E    +        + V +Q++ 
Sbjct: 180 VREGRDSLAREA-FRCLPVFNQIDW 203


>gi|240273423|gb|EER36944.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H143]
          Length = 1159

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 94/272 (34%), Gaps = 36/272 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K  R    E+    +   +   + FG+P I     EA+   A    +   +G    +++ 
Sbjct: 814  KKARRDADEVSHIMVSECQELLRLFGLPYITAP-MEAEAQCAELLSLGLVDG----VVTD 868

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +  +   +E      + K++ +   K++    L G   D   G
Sbjct: 869  DSDIF--LFGGTRVYKNMFNQAKFVECYISNDLEKEYNLDRNKLIQFAHLLG--SDYTEG 924

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQKKR---------RENILEYAETARL---- 242
            IPG+G  +A  +L E+  LE+     S+++   +         R+   +      L    
Sbjct: 925  IPGVGPVSALEILTEFPTLEDFRDWWSQVQMGAKLPEDSHSIFRKKFKKNVTKLFLPPGF 984

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              +++     +  +            +   L  F        L++ +  + +     + P
Sbjct: 985  PDKRVDTAYLEPKVDSDPSAFQWGVPDLNALRQF--------LMSTIGWSQERTDEVLVP 1036

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
            V+ D+N  E +G                 F+ 
Sbjct: 1037 VIRDMNRREQEGTQSNITNFFQGPQGAGAFAP 1068


>gi|166365344|ref|YP_001657617.1| ribonuclease D [Microcystis aeruginosa NIES-843]
 gi|166087717|dbj|BAG02425.1| probable ribonuclease D [Microcystis aeruginosa NIES-843]
          Length = 209

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 72/204 (35%), Gaps = 25/204 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       + +   + S +    T  +     +   I +        T+ +V     +
Sbjct: 8   VCDRDLSDDLLSRYLGVNSIAVDTETMGLIPGRDRLCLIQLCD-PSGFVTAIRVFRGQTE 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                                 LKK  E+E   K+ H  ++D   L + +GI+ +     
Sbjct: 67  APN-------------------LKKVMEDERIEKVFHFARFDVAQLSQTFGIATKPIFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS-QVQEHAIENSNV 548
            + S +  +  SSH + S+ Q+       E+ K+ +SS   +  + + Q   +A  +   
Sbjct: 108 KIASKLARTYTSSHGLKSLVQELEGI---ELDKTAQSSDWGNAANLTPQQLSYAANDVRY 164

Query: 549 ILQLWLLLRPKLIVEKLLHVYERL 572
           +L +   L   L  E+   + ++ 
Sbjct: 165 LLSVRDKLIVMLQREERWELAQKC 188


>gi|50292567|ref|XP_448716.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74608857|sp|Q6FM28|FEN1_CANGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|49528028|emb|CAG61679.1| unnamed protein product [Candida glabrata]
          Length = 381

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 93/300 (31%), Gaps = 51/300 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP----------AVTFRNE-- 75
               G   + + G   M ++ L+         +   +FD              T R E  
Sbjct: 55  STETGETTSHLMG---MFYRTLRMIDNGIKPCY---VFDGKPPVLKSHELDKRTSRREET 108

Query: 76  --IYPDYKANRPKIPEMLL------PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
                +      K+                 +   +  GIP +   G EA+   A     
Sbjct: 109 EKKLAEATEEAEKMKHERRLVKVSKEHNDEAKKLLELMGIPYVNAPG-EAEAQCAELAKK 167

Query: 128 AEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180
                  V    S D D +   +P    + T  E       +I+ E V++   +  ++ +
Sbjct: 168 G-----KVYAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHEINTEIVLQGLELTIDQFI 222

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  + G   D    I G+G  TA  L++E+G+LE I+       +   +  + E     
Sbjct: 223 DLGIMLG--CDYCDSIKGVGPVTALKLMKEHGSLEKIVEYIES-GEANNKWKVPENWPY- 278

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATTYDC 294
           + +R+L  ++ DV I      L         LI +               I R+      
Sbjct: 279 KEAREL-FVKPDV-IDANEIDLKWTPPKEDELIQYLCHEKKFSEERVRSGIKRLQKGLKS 336


>gi|305662518|ref|YP_003858806.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
 gi|304377087|gb|ADM26926.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
          Length = 354

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 37/194 (19%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +    A GIP I+       +          K+G A    S D D +   +P      T+
Sbjct: 140 KELLDAMGIPVIQAAEEGEAEAAYI-----AKKGLAWATASQDYDSLLFGAPRLVRNLTI 194

Query: 159 KE---------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYK 202
                            E I++E ++K  GI  E+++ +  L G   D  P G+ GIG K
Sbjct: 195 TGKRKLPGKDIYIEIKPEIIELEKLLKTLGITHEQLIDIAILIG--TDYNPDGVEGIGPK 252

Query: 203 TAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
           TA  L++ YG+LE I+ +          E++++       +  L       P+ + +E +
Sbjct: 253 TAYQLIKAYGSLEKIIKSPH---GSHISEDLIKIK-----NYFLN------PVVVDVERI 298

Query: 263 ILEDCNGPRLISFL 276
             ++ +  R+   L
Sbjct: 299 EWKEPDTNRIKDLL 312


>gi|156937484|ref|YP_001435280.1| flap endonuclease-1 [Ignicoccus hospitalis KIN4/I]
 gi|166973698|sp|A8AAC1|FEN_IGNH4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|156566468|gb|ABU81873.1| flap endonuclease 1 [Ignicoccus hospitalis KIN4/I]
          Length = 350

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 80/218 (36%), Gaps = 33/218 (15%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTY----IAEKEGFAVTIISTDKDLMQLVS----- 149
           +   +A G+P ++                    +  + +   +  + + +  L       
Sbjct: 140 KRLLEAMGVPWVQAPSEGEAQAAYMAAKGDVWASASQDYDSLLFGSPRLVRNLAVSGRRK 199

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
            P   +Y  VK E+I ++ V+++ GI  E++V +  L G   D  PG+ G+G KTA   +
Sbjct: 200 LPNKNVYVEVKPEEITLKCVLEELGITREQLVAIAVLIG--TDYTPGVKGVGPKTALRYV 257

Query: 209 QEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
           + YG+LE +L     +  K+    +  Y     L+ ++               L+    +
Sbjct: 258 KSYGDLERVLTALG-VDDKELY--LEAY--NFFLNPQVT----------DDYELVWRRPD 302

Query: 269 GPRLISF------LKALEFTKLINRVATTYDCDAANIE 300
             ++I               K I R+   +    +  +
Sbjct: 303 PQKIIEILVYEHDFNEERVRKAIERLMKAWKEKLSTKQ 340


>gi|307637121|gb|ADN79571.1| hypothetical protein hp908_0442 [Helicobacter pylori 908]
          Length = 285

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E         R   +A  I  +E                
Sbjct: 74  GRESFRYQLCDHYKQKRHQFDEGF-------RELLKALKIALVEKYPLKKGAKIQGEHCF 126

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 127 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 180

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 181 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 233

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +L  + 
Sbjct: 234 SDSEAKEKALLNMRLANMH 252


>gi|255727248|ref|XP_002548550.1| DNA polymerase gamma [Candida tropicalis MYA-3404]
 gi|240134474|gb|EER34029.1| DNA polymerase gamma [Candida tropicalis MYA-3404]
          Length = 1268

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 102/323 (31%), Gaps = 48/323 (14%)

Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719
                N I+   + + Q SK K           +K    +    +   T+T R       
Sbjct: 659 WLSNRNRIMDQFVVYNQSSKTKFFDTKKQIKE-HKEMAIILPNLATMGTITRRATENTWL 717

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779
             +   K  +G +++    +P     I AD    EL I A +   +          +IH 
Sbjct: 718 TASNAKKNRIGSELKALIEAPKGYCFIGADVDSEELWI-ASLVGDSMF--------EIHG 768

Query: 780 MVAAEIFGVNIEK------------VSPQMRRHAKTINFSIIYGISPFRLATQLR----- 822
             A     +  EK            +    R  AK  N+  IYG      +  L+     
Sbjct: 769 GTALGWMTLEGEKSQKTDLHSKTSSILGISRNDAKVFNYGRIYGAGIKFASRLLKQFNNS 828

Query: 823 IPRSEAADYIKRYFHR-------------------FPGIHEYIEKTKNFVRQNGYVETIF 863
           I   EA +  K+ +                     + G    +      + Q    +T  
Sbjct: 829 ISDKEANEIAKKLYDNTKGMTGRSKHFNNNQPKLYYGGSESVMFNALEAIAQQDEPKTPV 888

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL-ATKMLL 922
                 D +N       N    + +N  IQ S  D     +IS+    E + +   ++ +
Sbjct: 889 LGARITDALNVKNLKNNNY-MTSRVNWTIQSSGVDYLHLLIISMEYLCEKYGIEDARLAI 947

Query: 923 QIHDELVFEVPEEEITTASQIIV 945
            +HDEL + V E +   A+ ++ 
Sbjct: 948 TVHDELRYLVKENDKYKAALLLQ 970


>gi|72386509|ref|XP_843679.1| flap endonuclease-1 (FEN-1) [Trypanosoma brucei TREU927]
 gi|74830896|sp|Q57WW6|FEN1_TRYBB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|317376199|sp|C9ZKW4|FEN1_TRYBG RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|62175773|gb|AAX69901.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei]
 gi|70800211|gb|AAZ10120.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
 gi|261326734|emb|CBH09707.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 393

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 91/279 (32%), Gaps = 52/279 (18%)

Query: 28  RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVT-------FRNEIYPD 79
               G   + ++G F   L  + +  R          +FD    T        R +   D
Sbjct: 58  TNEAGDVTSHLSGIFFRTLRMIDEGLRPIY-------VFDGKPPTLKASELESRRQRAED 110

Query: 80  YKANRPKIPEML----------------LPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            K    K  E                    Q+  V+   +  GIP ++    EA+   A 
Sbjct: 111 AKHEFEKAKEEGDDEAMEKMSKRMVRVGRDQMEEVKTLLRLMGIPVVQAPS-EAEAQCAE 169

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPE 177
                +       + + D D +   S     + T  E K        ++ +++  G   +
Sbjct: 170 LVKKNKAW----AVGTEDMDALAFGSRVMLRHLTYGEAKKRPIAEYHLDEILEASGFSMQ 225

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L  L G   D +P I GIG   A   +++YG+LE  + +    +     E   + A
Sbjct: 226 QFIDLCILLG--CDYVPRISGIGPHKAWEGIKKYGSLEAFIESLDGTRYVVPEEFNYKDA 283

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
               L  + V    ++ I          + +   LI FL
Sbjct: 284 RNFFLEPE-VTPGEEIDIQF-------REPDEEGLIKFL 314


>gi|326536384|ref|YP_004300825.1| RNaseH ribonuclease [Acinetobacter phage 133]
 gi|299483465|gb|ADJ19559.1| RNaseH ribonuclease [Acinetobacter phage 133]
          Length = 314

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 73/234 (31%), Gaps = 46/234 (19%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDYPAVTF-RNEIYPDYKANRPKIPEMLLPQLP---- 96
            + L   +  +RKE   +    + +     + R +I   YK NR K+ E           
Sbjct: 53  LSTLKSNVVRARKEGYPTIVVTVDNTHMHGYTRRDIADYYKRNRQKMREDSKFDFDGFFE 112

Query: 97  ----LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPT 151
               +++          + I   EADD I   T         V I+S+D D  QL     
Sbjct: 113 HFPTVLQEIQDNMPYIVLSIPRIEADDHIGVITNYCLVRNIPVLIMSSDGDFTQLHKGDM 172

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIG----------- 200
              +    ++      V  K+G      + ++ + GD  D   G+  I            
Sbjct: 173 VKQWSPTLKK-----FVKPKFG-SSHMDLMVKIVKGDKKD---GVSPIQTRNDFYVNPLE 223

Query: 201 ----YKTAALLLQEYGN------LENILINASRIKQKKRRENILEYAETARLSR 244
                  A   ++   +      +E +L +          +   E  +   LSR
Sbjct: 224 GQRAPPAATKWIESIADCTTDEQIEKLLND------GTLWKRFKENRDLIDLSR 271


>gi|315586417|gb|ADU40798.1| conserved hypothetical protein [Helicobacter pylori 35A]
          Length = 258

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE--------------IQ 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIAIVERYPLKKGARIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPQNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGDFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|317968782|ref|ZP_07970172.1| ribonuclease [Synechococcus sp. CB0205]
          Length = 225

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 76/218 (34%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +++     +W   L    + +       +     +   + IS  D  +    ++     +
Sbjct: 22  VLDHDLNPEWRALLGASSALAVDTEAMGLIHGRDRLCLVQISD-DHDNVCCIRIHRGQTE 80

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
             +                   LK+  E     K+ H  ++D   L     I +      
Sbjct: 81  APL-------------------LKELMEAAGIEKVFHFARFDVAALAEGLDIHVSPIFCT 121

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +  + H +  +  +       E+ K  +SS    ++++S+SQ+  +A  +  
Sbjct: 122 KIGSRLARTYTNRHGLKDLVNE---LCHVELDKGAQSSDWGRVEELSESQLA-YAANDVR 177

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L+ E+ L + +R     I V+S ++ 
Sbjct: 178 YLLAARTRLIEMLVREERLDLAQRC-FACIPVISDLDR 214


>gi|228475705|ref|ZP_04060423.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270487|gb|EEK11922.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 367

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 111/278 (39%), Gaps = 38/278 (13%)

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
            W +L K  +     L + I+   Q+++T  SL  T T R+ +   N+Q       L ++
Sbjct: 101 HWEKLYKNFNA----LESAIDG-NQKLNTKISLIGTRTHRITTRSFNIQG------LSKE 149

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +++  +     K+   D+   E  +LA++A    L +   +S  ++  +      +N   
Sbjct: 150 VKQLILPTQFNKVFVIDFKAFEPSVLAYLANDNHLKEYLNSSQGLYDTL------LNNLS 203

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK-N 851
           ++   R+  K            + ++ + ++ +  + D   +   +F  + +  E+    
Sbjct: 204 LTETHRKLVKRAFIGSFLFGGNY-MSEKFKLNQYISEDEWNKAMSKFSNVIKIKEQISNK 262

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
            + +  Y  T   +  H   I +                 +Q +++ I +  +  V++  
Sbjct: 263 KIVKMPYGITHDMKHCHGSSIMA---------------LYVQTASSYIFKNILWEVYQH- 306

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949
           + ++   +++L IHD ++ E   +E    ++ +   ME
Sbjct: 307 QCNQEDFRIMLPIHDAIMIECNTDE---VAEHVRQLME 341


>gi|282897776|ref|ZP_06305775.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
 gi|281197455|gb|EFA72352.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
          Length = 209

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 70/204 (34%), Gaps = 25/204 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +++       + +     + +    T  +     +   + +   + K             
Sbjct: 8   VLDGDLDHPTLSEYLRSDALAVDTETMGLVPQRDRLCLVQLCNPEGKVTA---------- 57

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
                 + + G+          L++  E+ H +K+ H  ++D   L H   I ++     
Sbjct: 58  -----VRIAKGQTHAPN-----LQQLLESTHVVKVFHFARFDLATLRHNLKIYVQPVFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +  + H +  + Q+       E+ KS +SS   + +S S  Q  +A  +   
Sbjct: 108 KIASKLARTYTNRHGLKELVQELEQL---ELDKSSQSSDWGNPVSLSDAQLSYAANDVRY 164

Query: 549 ILQLWLLLRPKLIVEKLLHVYERL 572
           +L L   L   L  E+   + +  
Sbjct: 165 LLSLKQKLSQMLQREERWQLVQEC 188


>gi|66811596|ref|XP_639977.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
 gi|74854014|sp|Q54NU0|FEN1_DICDI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|60466913|gb|EAL64957.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
          Length = 384

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 104/314 (33%), Gaps = 58/314 (18%)

Query: 5   NHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
             +  +D S+ +Y+   A             G   + + G   M ++ ++   +     +
Sbjct: 28  GRIIAIDASTSLYQFLIAMNADVSSALTNQLGETTSHLQG---MFYRTIKLISRGIKPIY 84

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLP-----------------------QLPL 97
              +FD  A   ++      +A R +  E L                         Q   
Sbjct: 85  ---VFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGTNEEVQKFAKRVITVTRKQNED 141

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYI--AEKEGFAVTIISTDKDLMQLVSPTTCLY 155
                   G+P ++    EA+   A       A   G      S D D + L S      
Sbjct: 142 CIKLLTLMGVPIVKAPC-EAEAQCAEIVKKGKAWATG------SEDMDSLTLGSTVLLRR 194

Query: 156 DTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
               E K       +++ V++  G+  ++ + L  L G   D    I GIG K A  L+Q
Sbjct: 195 LFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLG--CDYCDSIKGIGPKRAIELIQ 252

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           ++ +LE ++ +    K K        Y E     R+L      +P    L     +D + 
Sbjct: 253 KHKSLEEVIKHLD--KSKYPLPEFFPYPEV----RELFKNPNVIPAD-QLPPFQWKDPDV 305

Query: 270 PRLISFL-KALEFT 282
             L  FL + + F+
Sbjct: 306 EGLNKFLVEEMGFS 319


>gi|15897130|ref|NP_341735.1| flap endonuclease-1 [Sulfolobus solfataricus P2]
 gi|284174372|ref|ZP_06388341.1| flap endonuclease-1 [Sulfolobus solfataricus 98/2]
 gi|25310048|pir||F90158 DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [imported] -
           Sulfolobus solfataricus
 gi|13813313|gb|AAK40525.1| DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [Sulfolobus
           solfataricus P2]
          Length = 302

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 84/224 (37%), Gaps = 30/224 (13%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIA----TYTYIAEKEGFAVTIISTDKDLMQLVS----- 149
           +   +A GIP ++       +         ++ A  + +   +    + +  L       
Sbjct: 89  KKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRK 148

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+ E ++KK GI  E+++ +  L G   D  P GI GIG + A  +
Sbjct: 149 LPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIG--TDYNPDGIRGIGPERALKI 206

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           +++YG +E  +     I +K    NI E      L+ ++V          P E L L + 
Sbjct: 207 IKKYGKIEKAME-YGEISKKDINFNIDEIR-GLFLNPQVVK---------PEEALDLNEP 255

Query: 268 NGPRLISF------LKALEFTKLINRVATTYDCDAANIEPVVLD 305
           NG  +I+                I R+               LD
Sbjct: 256 NGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLD 299


>gi|322815201|gb|EFZ23909.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma cruzi]
          Length = 393

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 24/220 (10%)

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           FD       +E+    K +  +   +   QL   +   Q  GIP ++    EA+   A  
Sbjct: 115 FDTAKEEGNDELME--KMS-KRTVRVSREQLEEAKKLLQLMGIPVVQAPS-EAEAQCAEL 170

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEK 178
               +       + + D D +   +P    + T  E K        ++ ++   G+   +
Sbjct: 171 VKKNKAW----AVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQ 226

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  L G   D +P I GIG + A   ++++G++E +L +    +         E A 
Sbjct: 227 FIDLCILLG--CDYVPKISGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEAR 284

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
              L  + V    ++ I          + +   L+ FL  
Sbjct: 285 QFFLKPE-VTPAEEIEIQF-------REPDEEGLVKFLVE 316


>gi|159030499|emb|CAO91403.1| rnd [Microcystis aeruginosa PCC 7806]
          Length = 209

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 73/204 (35%), Gaps = 25/204 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       + +   + S +    T  +     +   I +        T+ ++     +
Sbjct: 8   VCDRDLSDDLLSRYLGVNSIAVDTETMGLIPGRDRLCLIQLCD-PSGFVTAIRIFRGQTE 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                                 LKK  E+E   K+ H  ++D   L + +GI+ +     
Sbjct: 67  APN-------------------LKKVMEDERIEKVFHFARFDVAQLSQTFGIATQPIFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS-QVQEHAIENSNV 548
            + S +  +  SSH + S+ Q+       E+ K+ +SS   + ++ + +   +A  +   
Sbjct: 108 KIASKLARTYTSSHGLKSLVQELEGI---ELDKTAQSSDWGNAVNLTPKQLSYAANDVRY 164

Query: 549 ILQLWLLLRPKLIVEKLLHVYERL 572
           +L +   L   +  E+   + ++ 
Sbjct: 165 LLSVRDKLIVMMQREERWELAQKC 188


>gi|108562850|ref|YP_627166.1| hypothetical protein HPAG1_0425 [Helicobacter pylori HPAG1]
 gi|107836623|gb|ABF84492.1| DNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori HPAG1]
          Length = 278

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 67  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIALVEKYPLKKGAKIQGEHCF 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 120 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 174 -----FAYYQCIVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 226

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 227 SDSEAKEKALLNMRLVNMH 245


>gi|317374931|sp|A1CJ75|FEN1_ASPCL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 395

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   +P    + T
Sbjct: 141 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +  V++   +   + + +  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEQRKEPIQEIHLNRVLEGLDMDRSQFIDMCILLG--CDYLEPIPKVGPNTALKLIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E       +R+L           P      E  +   
Sbjct: 254 GSLEKVVEAIESDPKKKY--VIPEDWPYQD-ARELFHHPDVRAADHPECDFKWEAPDIEA 310

Query: 272 LISFL 276
           L+ FL
Sbjct: 311 LVDFL 315


>gi|121704724|ref|XP_001270625.1| Flap endonuclease, putative [Aspergillus clavatus NRRL 1]
 gi|119398771|gb|EAW09199.1| Flap endonuclease, putative [Aspergillus clavatus NRRL 1]
          Length = 401

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   +P    + T
Sbjct: 147 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 201

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +  V++   +   + + +  L G   D +  IP +G  TA  L++E+
Sbjct: 202 FSEQRKEPIQEIHLNRVLEGLDMDRSQFIDMCILLG--CDYLEPIPKVGPNTALKLIREH 259

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E       +R+L           P      E  +   
Sbjct: 260 GSLEKVVEAIESDPKKKY--VIPEDWPYQD-ARELFHHPDVRAADHPECDFKWEAPDIEA 316

Query: 272 LISFL 276
           L+ FL
Sbjct: 317 LVDFL 321


>gi|297526096|ref|YP_003668120.1| flap structure-specific endonuclease [Staphylothermus hellenicus
           DSM 12710]
 gi|297255012|gb|ADI31221.1| flap structure-specific endonuclease [Staphylothermus hellenicus
           DSM 12710]
          Length = 350

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 110/323 (34%), Gaps = 71/323 (21%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRK 54
              + ++DG +    A Y      R+ DG P         + ++G F   +  L    + 
Sbjct: 24  RGRIVVIDGYN----ALYQFLTAIRQPDGTPLMDSQGRITSHLSGLFYRTINILENGIKP 79

Query: 55  ESIASHFAVIFD-----------YPAVTFRNEIYPDYKAN-RPKIPEMLL---------- 92
                    +FD                 R +    Y+   R    E             
Sbjct: 80  AY-------VFDGKPPEIKAREIEKRRKIREDASKKYEEALRRGDVEAARRYAMMSAKLT 132

Query: 93  -PQLPLVRLATQAFGIPAI----EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
              +   +    A GIP I    E +   A  +     + +  + +   +  + + +  L
Sbjct: 133 DEMVHDAKKLLDAMGIPWIQAVAEGEAQAAYIVGKGDAWASASQDYDSLLFGSPRLIRNL 192

Query: 148 VS------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIG 200
                   P   +Y  +K E I+++ +++K GI  E+++ +  L G   D  P G+ GIG
Sbjct: 193 TISGRRKLPRKNVYIEIKPEIIELKKLLEKLGITREQLIYVALLIG--TDYNPDGVKGIG 250

Query: 201 YKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
            K A  L++ Y  L+ IL    + +     E I+EY     L+  +              
Sbjct: 251 PKKALQLVKAYKTLDKILKAIPKTEFPVEPEKIVEY----FLNPPVTTDY---------- 296

Query: 261 HLILEDCNGPRLISFL-KALEFT 282
            L  ++ +  ++   L +  +F 
Sbjct: 297 KLEWKEPDESKIREILVEEHDFN 319


>gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
 gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
          Length = 832

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 96/276 (34%), Gaps = 35/276 (12%)

Query: 314 IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQKLSQYPINNDSYTKIV 372
            A+   I R   +   Q + L+    +   E   P    L + Q     PI+    T + 
Sbjct: 218 AALADFIHRQREVHQGQPADLTAHPYQYELEHFQPTPQQLLKKQPQPSKPIDATPLTLVT 277

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
             +++     KL      +  +                          SF+  T  + +S
Sbjct: 278 TLEELMDMNDKLTMCSEFAVDLE--------------------HHSYRSFQGFTCLMQVS 317

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
                D        +  L  L   F +   +K+ H    D   L R +G+ +    D   
Sbjct: 318 T-RDHDYIVDTLALRADLHVLNDTFTDPKVVKVFHGADMDIQWLQRDFGVYVVNMFDTGQ 376

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            S+VL  G   H +A + + +      ++   +K  +   +I    S++ ++A E+++ +
Sbjct: 377 ASHVL--GLPRHSLAYLLKTYC-----DVEPDKKYQLADWRIRPLPSEMTQYAREDTHYL 429

Query: 550 LQLWLLLRPKLIVEKLLH---VYERLDKPMIDVVSQ 582
           L ++  +R +L+         ++  L++     + +
Sbjct: 430 LHIYDCMRSELLDRGNNEANLLHNTLERSRQVCLQR 465


>gi|322369323|ref|ZP_08043888.1| flap endonuclease-1 [Haladaptatus paucihalophilus DX253]
 gi|320551055|gb|EFW92704.1| flap endonuclease-1 [Haladaptatus paucihalophilus DX253]
          Length = 326

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 9/126 (7%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           R       +P IE    E +   A        +       + D D + L +P T    T 
Sbjct: 138 RELLDLLDVPVIEAPA-EGEAQAAHMARTGAVD----YAGTEDYDALLLGAPLTLRQLTS 192

Query: 159 KE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
           K   E +D E  + +  I  E++V +  L G   D   G+ G+G KTA   + E+G+L  
Sbjct: 193 KGNPELMDFEATLDEHDITWEQLVDIAILCG--TDFNEGVSGVGPKTALKGVTEHGDLWG 250

Query: 217 ILINAS 222
           +L    
Sbjct: 251 VLEERD 256


>gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium]
          Length = 202

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 58/193 (30%), Gaps = 25/193 (12%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           N        + L+     +    T  ++    +   + +S+ D                 
Sbjct: 3   NYLHHGDLPEGLDLGPVIAIDTETMGLNPMRDRLCLVQLSSGDGDAHLVHFQGRYEAP-- 60

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
                               LK    + + LK+ H  ++D  +L R  G++        +
Sbjct: 61  -------------------RLKALLADHNRLKLFHYARFDIAMLARWLGVTCTPVYCTKI 101

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            S +  +    H +  + +  L     ++ K +++S        ++ Q +A  +   +  
Sbjct: 102 ASRLTRTNTDKHGLKDLCRDLLGI---DLSKQQQTSDWGSGDLTAEQQAYAASDVLHLHA 158

Query: 552 LWLLLRPKLIVEK 564
           L   L   L  E 
Sbjct: 159 LKAKLDALLKREG 171


>gi|75674370|ref|YP_316791.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
 gi|74419240|gb|ABA03439.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 206

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 59/184 (32%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 GSA+    T  +     +   + +S  D   D   ++     D           
Sbjct: 14  DLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADV-IQIARGQRDAPN-------- 64

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGR 500
                      L K  ++   +KI H  ++D   L+  +G+  R      + S ++ +  
Sbjct: 65  -----------LIKLLKDPAIVKIFHFARFDLAALYNAFGVMPRPVYCTKIASRLIRTYT 113

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +  + ++ LS    ++ K ++SS             +A  +   +  L   L   L
Sbjct: 114 DRHGLKDLVRELLSI---DLSKQQQSSDWGSPTLSDAQLAYAASDVLHLHALRDKLEATL 170

Query: 561 IVEK 564
             E 
Sbjct: 171 ARED 174


>gi|15611470|ref|NP_223121.1| hypothetical protein jhp0402 [Helicobacter pylori J99]
 gi|4154936|gb|AAD05983.1| putative [Helicobacter pylori J99]
          Length = 288

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 77  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIALVEKYPLKKGAKIQGEHCF 129

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 130 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 183

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 184 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 236

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 237 SDSEAKEKALLNMRLVNMH 255


>gi|327284750|ref|XP_003227099.1| PREDICTED: DNA polymerase subunit gamma-1-like [Anolis carolinensis]
          Length = 1165

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 106/338 (31%), Gaps = 94/338 (27%)

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            R   +      A T+T R         +      +G +++    +PP   L+ AD    E
Sbjct: 766  RYGAILPQVITAGTVTRRAVEPTWLTASNARADRVGSELKAMVQAPPGYHLVGADVDSQE 825

Query: 755  LRIL-----AHIAKITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
            L I      AH A +                +  D+H   A+ +            R HA
Sbjct: 826  LWIAAVLGEAHFAGLHGCTAFGWMTLQGKKSSGTDLHSKTASTV---------GISREHA 876

Query: 802  KTINFSIIYGIS-PFR----LATQLRIPRSEAADYIKRYFHRFPGIH--------EYIEK 848
            K  N+  IYG   PF     +    R+   +A++  ++ +    GI         E++ K
Sbjct: 877  KVFNYGRIYGAGQPFAERLLMQFNHRLTEQQASEKARQMYAATKGIRRCHLSEEGEWLVK 936

Query: 849  T----KNFVRQNGYVETIFGRRIHYDEI-NSPKSSIRNINERAAIN-------------- 889
                  +   +NG V     R+IH +    S K     + +R   N              
Sbjct: 937  ELGIPVDRA-ENGSVSLQDVRKIHREVGKRSQKKKWDVVRQRVWSNGTESEMFNKLESIA 995

Query: 890  ---------------------------------APIQGSAADITRRAMISVHKSLEDHKL 916
                                               +Q SA D     ++++    E++ +
Sbjct: 996  MSDSPCTPVLGCRISRALEPAAVKGEFVTSRVNWVVQSSAVDYLHLMLVAMKWLFEEYSI 1055

Query: 917  ATKMLLQIHDELVFEVPEEEITTAS------QIIVHSM 948
              +  + IHDE+ + V  E+   A+       ++   M
Sbjct: 1056 DGRFCISIHDEVRYLVQSEDRYRAALALQITNLLTRCM 1093


>gi|146171182|ref|XP_001470841.1| flap endonuclease-1 [Tetrahymena thermophila]
 gi|317376196|sp|A4VDN2|FEN1_TETTH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|146145019|gb|EDK31639.1| flap endonuclease-1 [Tetrahymena thermophila SB210]
          Length = 384

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 93/280 (33%), Gaps = 45/280 (16%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTF-------RNEIYPDY 80
              DG     + G  N    L++N  K         +FD     F       R +   + 
Sbjct: 58  TDKDGNKTGHLVGLLNRTVMLIENGLKP------VWVFDGKPPQFKSGELARRQKAKDEA 111

Query: 81  KANRP------KIPEMLLPQLPLVRL----------ATQAFGIPAIEIQGFEADDIIATY 124
              +        + E L  +   + +            Q  G+P I     EA+   A  
Sbjct: 112 AEKQKTAIETGDMQEALKQEQRNLHITKEMKADAIKLLQLVGVPVILAPC-EAEAQCAAL 170

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVC 181
                K+ FA   ++ D D +   +P        K+E I     E ++++  +   + V 
Sbjct: 171 AK--AKKVFAT--VTEDMDALTFATPFLLRNLNSKKEPITEINYEKMLQELKLSHNEFVD 226

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-KQKKRRENILEYAETA 240
           L  L G   D +  I G+G   A  L+ E+ +LE +L +   + KQ  +++     +   
Sbjct: 227 LCILCG--CDYLGRIEGVGPVNAFKLITEHKSLEKVLEHMEEVNKQSTKKQKYTVPSSYD 284

Query: 241 RLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKA 278
            +S          P     E   L  +  +   L  FL  
Sbjct: 285 YVS---ARDLFINPEVTDPETIQLEWKKPDVEELKKFLVE 321


>gi|295982229|pdb|3H8S|A Chain A, Structure Of D19n T4 Rnase H In The Presence Of Divalent
           Mag
          Length = 305

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 42  CNMLWKLLQNSRKESI-------ASHFAVIFD-YPAVTFRNEIYPDYKANRPKIPEM--- 90
            +M+  L+ NS K ++        +   +  D   +  +R +    YK NR K  E    
Sbjct: 40  LSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTW 99

Query: 91  -----LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM 145
                      ++           ++I  +EADD IA        EG  + IIS+D D  
Sbjct: 100 DWEGYFESSHKVIDELKAYMPYIVMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFT 159

Query: 146 QLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           QL   P    +  + ++ + I+    +           + L GD  DN+  + 
Sbjct: 160 QLHKYPNVKQWSPMHKKWVKIKSGSAEIDCMT------KILKGDKKDNVASVK 206


>gi|302900157|ref|XP_003048206.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|317374915|sp|C7Z125|FEN1_NECH7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|256729138|gb|EEU42493.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 395

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A       + G      S D D +   SP    + T
Sbjct: 141 CQRLLKLMGIPYIIAP-TEAEAQCAVLA----QAGKVYAAASEDMDTLCFNSPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +E V++  G+  ++ V L  L G   D +  IP +G  TA  L++++
Sbjct: 196 FSEQRKEPIQEIHLEKVLEGLGMERKQFVDLCILLG--CDYLDPIPKVGPTTALKLIRDH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE I+    +  +KK    + E     + +R L           P   +  E  +   
Sbjct: 254 GSLEKIVEAMEKDPKKKY--VLPEDWPY-KDARDLFFEPDVRKADDPECDVKWEKPDMEG 310

Query: 272 LISFL 276
           L+ FL
Sbjct: 311 LVQFL 315


>gi|124026737|ref|YP_001015852.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A]
 gi|123961805|gb|ABM76588.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A]
          Length = 214

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 8/138 (5%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           +LK   EN+   K+ H  ++D   L     I++       + S +  +    H +  +  
Sbjct: 74  HLKSILENKTIEKVFHFARFDVAALASNLNINVNPIFCTKIASKIGRTYSPRHGLKEVVL 133

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQE--HAIENSNVILQLWLLLRPKLIVEKLLHV 568
           + +     E+ K  +SS    K+ D   ++  +A  +   +L     L   L  E+   +
Sbjct: 134 ETVGV---ELDKQAQSS-DWGKVGDLTQKQLIYAANDVRYLLGAKHKLEEMLKREERWGL 189

Query: 569 YERLDKPMIDVVSQMEIT 586
            ++     + V+S+++  
Sbjct: 190 AQKC-FQCVPVLSELDRR 206


>gi|2289912|gb|AAC47658.1| mitochondrial DNA polymerase catalytic subunit precursor [Drosophila
            melanogaster]
          Length = 1145

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 104/338 (30%), Gaps = 86/338 (25%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +        T+T R         +      LG ++R    +PP  +L+ AD    EL I 
Sbjct: 758  ICPQVVACGTLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 759  AHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + +       +                N  D+H + A  +            R HAK IN
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVIN 868

Query: 806  FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HRFPGIHEYIEKTKNFVR 854
            ++ IYG        L  Q       SEA     + F        +    E+ ++ ++   
Sbjct: 869  YARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVYRLREEFHDELEDRAY 928

Query: 855  Q------------------------NGYVETIFGRR--------------------IHYD 870
                                      G  E+    R                       +
Sbjct: 929  SSYEASRLAIQRNRTLAEVFHRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALE 988

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                P+   R +  R  IN  +Q  A D     ++S+   +  H    +  L  HDEL +
Sbjct: 989  ADTGPEQEQRFLPTR--INWVVQSGAVDFLHLMLVSMRWLMGSH---VRFCLSFHDELRY 1043

Query: 931  EVPEEE--ITTASQIIVHSMEKA-CLPKINL-RVPLKV 964
             V EE       +  I + M ++ C+ +I L  +P+ V
Sbjct: 1044 LVKEELSPKAALAMHITNLMTRSFCVSRIGLQDLPMSV 1081


>gi|70606571|ref|YP_255441.1| flap endonuclease-1 [Sulfolobus acidocaldarius DSM 639]
 gi|68567219|gb|AAY80148.1| XPG/RAD25 related endonuclease [Sulfolobus acidocaldarius DSM 639]
          Length = 331

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 37/217 (17%)

Query: 79  DYKANRPKIPEMLLPQLPLVRL---ATQAFGIPAIEIQGFEADDIIAT----YTYIAEKE 131
           +Y+  R      +     +V        A GIP ++  G    +         ++ A  +
Sbjct: 95  EYREIRKYAQAAVRLSNEMVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQ 154

Query: 132 GFAVTI-----------ISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
            +   +           IS  + L     P   +Y  +K E I++E ++KK GI  E+++
Sbjct: 155 DYDSLLFGAKRLVRNITISGKRKL-----PNKDVYVEIKPELIELESLLKKLGINREQLI 209

Query: 181 CLQALTGDSIDNIP-GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
            +  L G   D  P G+ GIG KTA  ++++Y N+EN +     I+  K   +I E    
Sbjct: 210 DIAILIG--TDYNPDGVKGIGVKTALRIIKKYNNIENAIEK-GEIQLSKINFDIREI--- 263

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
               RKL        +  P E L L +CN   +I  L
Sbjct: 264 ----RKL---FITPEVKKPTERLELAECNEREIIELL 293


>gi|83773193|dbj|BAE63320.1| unnamed protein product [Aspergillus oryzae]
          Length = 359

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 105 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 159

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++   +  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 160 FSEQRKEPILEIHLSRALEGLDMDRKQFIDLCILLG--CDYLEPIPKVGPNTALKLIREF 217

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++ +     +KK    I E       +R+L +       + P      E  +   
Sbjct: 218 GSLEKVVEHMESDPKKKY--VIPEDWPYQD-ARELFLNPDVREASHPDCDFKWEAPDIEG 274

Query: 272 LISFL 276
           L+ FL
Sbjct: 275 LVEFL 279


>gi|76802527|ref|YP_327535.1| flap endonuclease-1 [Natronomonas pharaonis DSM 2160]
 gi|121696716|sp|Q3IPG8|FEN_NATPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|76558392|emb|CAI49983.1| flap structure-specific endonuclease [Natronomonas pharaonis DSM
           2160]
          Length = 328

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 85/260 (32%), Gaps = 54/260 (20%)

Query: 7   LFLVDGSSFIYRAF------YATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  VD  +++YR +      +         DG  V  + G    L K  ++   +     
Sbjct: 24  VVAVDAHNWLYR-YLTTTVKFTRSEAYTTADGEEVANLIGVVQGLPKFFEH---DVTP-- 77

Query: 61  FAVIFDYP-------------AVTFRNEIYPDYKANRPKIPE------MLLPQL------ 95
              +FD                   R E   +    R +             Q       
Sbjct: 78  -VFVFDGGVSDLKADEVEKRRDQRERYEAQLEAAKERDETDAAEIAALESRTQRLTDTIV 136

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
              R       +P +E    E +   A      + +     + S D D + L +P T   
Sbjct: 137 ETTRELLARLDVPVVEAPA-EGEAQAAHMARRGDAD----YVGSEDYDALLLGAPYTLRG 191

Query: 156 DTVKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
            T     E +D E  +    +  E +V    L G   D   G+ G+G KTA  L+ E+G+
Sbjct: 192 LTSNGDPECMDFEATLSTHDLSWEGLVDAAILMG--TDFNEGLSGVGPKTAVKLIHEHGD 249

Query: 214 LENILI-------NASRIKQ 226
           L ++L        +A RI++
Sbjct: 250 LRSVLAARDDDIPHADRIRE 269


>gi|281416187|ref|YP_003347922.1| exonuclease [Vibrio phage N4]
 gi|237701494|gb|ACR16487.1| exonuclease [Vibrio phage N4]
          Length = 287

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 21/219 (9%)

Query: 1   MQKE--NHLFLVDGSSFIYRAFYATPLLSRKHDGL------PVNAIAGFCNMLWKLLQNS 52
           M K   NH  ++D    +Y+A  A  + ++  D +       V A       +  ++   
Sbjct: 1   MSKPLVNHALILDADYLVYQAMSAAEIETQWSDDVWTLECDHVKAWDILIGSVQAIVAK- 59

Query: 53  RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112
           RK    S   + F      +R ++ P YKANR    +        V    Q     +   
Sbjct: 60  RKAWATSKIVMCF-TDDHNWRKDVLPTYKANRKATRKP-TGYRAFVNKVMQYPEWESFLR 117

Query: 113 QGFEADDIIATYTYIAEKEGFAV-TIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK 171
              E DD +          G    T++S DKD   +  P    + T  E    I+ + ++
Sbjct: 118 PNLEGDDCMGILGTRPSLVGAKTSTLVSCDKDFNTI--PCEFFWLTTGE----IKTITEE 171

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
                ++   LQ + GD  D   GI G+G  TA   L+E
Sbjct: 172 ---DADRWHMLQTIMGDVTDGYSGIKGMGKDTALAFLEE 207


>gi|221121078|ref|XP_002157951.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 758

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 96/259 (37%), Gaps = 33/259 (12%)

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
           +   + K  AI+ +I  D   +   F S     +   S+  P    LE  + L    ++ 
Sbjct: 181 VPYIKQKHNAIKRDILSDFRTEIEDFES--HPYAYELSKLEPHDWQLEEAEPLKYPMLDT 238

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            + T I   + +   + KL+ +   +  +   +  +F      + IST            
Sbjct: 239 TNLTYIDTDEGLNDLINKLKKVKEIAVDLEHHSYRSFQGFLCLMQIST------------ 286

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                      +D        +E +  + + F + + LK+ H    D   L R +G+ + 
Sbjct: 287 ---------RFEDFIIDTLALREEMYKINEIFSDPNILKVMHGADSDIGWLQRDFGVYVV 337

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHA 542
              D    +  L   R    +A +  K+ +     +   ++  +   +I     ++  +A
Sbjct: 338 NMFDTGQAARTLHEDR--FSLAYLLSKYCN-----VDAQKQYQLADWRIRPIPKEMILYA 390

Query: 543 IENSNVILQLWLLLRPKLI 561
            E+++ +L ++ +LR +L+
Sbjct: 391 QEDTHYLLYVYDILRNQLL 409


>gi|67524613|ref|XP_660368.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
 gi|74597180|sp|Q5B9L6|FEN1_EMENI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|40744016|gb|EAA63198.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
 gi|259486319|tpe|CBF84062.1| TPA: 5' to 3' exonuclease, 5' flap endonuclease (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 395

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 141 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++  G+   + + L  L G   D +  IP +G  TA  L++++
Sbjct: 196 FSEQRKEPIQEIHLNRALEGLGMDRNQFIDLCILLG--CDYLEPIPKVGPNTALKLIRDH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G LE ++ +    K  K++  I E       +R+L +         P      E  +   
Sbjct: 254 GTLEKVVESIE--KDPKQKYVIPESWPYQD-ARELFLNPDVRDANDPECDFKWEAPDIEG 310

Query: 272 LISFL 276
           L+ FL
Sbjct: 311 LVDFL 315


>gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
 gi|238658291|emb|CAZ29351.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
          Length = 830

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 106/306 (34%), Gaps = 35/306 (11%)

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
            L  +K I R  T++     N          ++   I    E+  +   +++ +      
Sbjct: 126 KLLSSKYIVRPQTSFATPPDNSYSSFRPKIKSKPNCIQPLPELLSNDNGESTDYPHPYKV 185

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
             +      P     E + +       + SY  +     ++Q ++ L      +  +   
Sbjct: 186 ELETFGNNLPS--LNEMMSEDFPVKPLDSSYQYVDTLDTLEQIMKSLSMCKYIAVDLEHH 243

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           +  +F      I +STL                       D        ++ LS L + F
Sbjct: 244 SYRSFLGITCLIQMSTL---------------------GSDYIIDALALRDHLSILNEVF 282

Query: 458 ENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
            +   +K+ H    D + L R +G+ +    D  + + +L        ++ + Q+++   
Sbjct: 283 TDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFDTGIAARLLQ--YGRFSLSYLLQRFVG-- 338

Query: 517 RKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              I  ++K  +   +I    +++ E+A  +++ +L +   +  +L    LL V   +++
Sbjct: 339 ---IYANKKYQLADWRIRPLPNELIEYARSDTHYLLHIASRMCRELQDRDLLSVA--IER 393

Query: 575 PMIDVV 580
                +
Sbjct: 394 ARQLCL 399


>gi|116326461|ref|YP_803181.1| RNaseH [Enterobacteria phage RB32]
 gi|115344054|gb|ABI95063.1| RNaseH [Enterobacteria phage RB32]
 gi|291290467|dbj|BAI83262.1| RNaseH ribonuclease [Enterobacteria phage AR1]
          Length = 305

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 42  CNMLWKLLQNSRKESI-------ASHFAVIFD-YPAVTFRNEIYPDYKANRPKIPEM--- 90
            +M+  L+ NS K ++        +   +  D   +  +R +    YK NR K  E    
Sbjct: 40  LSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTW 99

Query: 91  -----LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM 145
                      ++           ++I  +EADD IA        EG  + IIS+D D  
Sbjct: 100 DWEGYFESSHKVIDELKAYMPYIVMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFT 159

Query: 146 QLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           QL   P    +  + ++ + I+    +           + L GD  DN+  + 
Sbjct: 160 QLHKYPNVKQWSPMHKKWVKIKSGSAEIDCMT------KILKGDKKDNVASVK 206


>gi|55376971|ref|YP_134821.1| flap endonuclease-1 [Haloarcula marismortui ATCC 43049]
 gi|74520713|sp|Q5V5T7|FEN_HALMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|55229696|gb|AAV45115.1| DNA repair protein Rad2 [Haloarcula marismortui ATCC 43049]
          Length = 326

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 97/315 (30%), Gaps = 69/315 (21%)

Query: 7   LFLVDGSSFIYRAF------YATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  VD  +++YR +      + +       +G  V  + G    L K  ++   +     
Sbjct: 24  VVAVDAHNWLYR-YLTTTVKFTSESKYTTSNGEEVANLIGVVQGLPKFFEH---DMTP-- 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPL----------------------- 97
              +FD      +++     +  R K    L                             
Sbjct: 78  -VFVFDGAVTDLKDDEVEKRREQRQKYESELEAAREAGDSTRVAKLDSRTQRLTDTIVDT 136

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            R   +   +P ++    E +   +      + +     + + D D +   +P T    T
Sbjct: 137 TRDLLELLDVPIVDAPA-EGEGQASVMARRGDVD----YVGTEDYDALLFGAPMTLRQIT 191

Query: 158 VKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
            K   E +D    ++   +  E++V    L G   D   GI GIG KTA   L E+G+L 
Sbjct: 192 SKGDPELMDFAATLEHHDLTWEQLVDAAILMG--TDFNEGISGIGPKTAVKDLHEHGDLY 249

Query: 216 NILINASRIKQKKRRENILEYAETARLSRKL-----VMLRTDVP--ITIPLEHLI----- 263
            +L                E+ + A   R L          ++P  I   ++        
Sbjct: 250 TVLAARG------------EHIDHADRIRDLFLDPAATDDYEIPDSIEPDIDAARTFVTD 297

Query: 264 LEDCNGPRLISFLKA 278
             + +   +    + 
Sbjct: 298 QWEVDADEVARGFER 312


>gi|304372804|ref|YP_003858300.1| flap endonuclease-1 [Sulfolobus islandicus M.16.27]
          Length = 351

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 110/295 (37%), Gaps = 58/295 (19%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +DG + +Y+   A     R+ DG P         + ++G F   +  L +          
Sbjct: 28  IDGYNALYQFLAAI----RQPDGTPLMDSHGRITSHLSGLFYRTINILEEGVIPIY---- 79

Query: 61  FAVIFDYPAVTFRNEIYP---------DYKANRPKIP---EMLLPQLPLV---------- 98
              +FD      ++E            + K  R K     E L      +          
Sbjct: 80  ---VFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIEELRKYSQAILRLSNMMVEE 136

Query: 99  -RLATQAFGIPAI----EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---- 149
            +   +A GIP +    E +   A   I  +++ A  + +   +    + +  L      
Sbjct: 137 SKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNLTITGKR 196

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P   +Y  +K E I+ E ++KK GI  E+++ +  L G   D  P GI GIG + A  
Sbjct: 197 KLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIG--TDYNPDGIKGIGPERALK 254

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           ++++YG +E  +     I ++    NI E   +  L  ++V     + +  P E 
Sbjct: 255 IIKKYGKIEKAIE-YGEISKRDITFNIDEIR-SLFLKPQVVKPEETLDLNEPNEK 307


>gi|148807520|gb|ABR13563.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 25/196 (12%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           KT+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  KTEKGAIIVNEKV---LEGIDIPEAKLIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762
                +TGR+    PNL  +P +    G++ R  +  P   KLI              +A
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGRECRSFWCVPEGHKLIG---------CGCPVA 173

Query: 763 KITPLYQVFENSLDIH 778
                   +     IH
Sbjct: 174 XNYACLAHYMRDESIH 189


>gi|228861176|ref|YP_002854199.1| RNaseH [Enterobacteria phage RB51]
 gi|227438850|gb|ACP31162.1| RNaseH [Enterobacteria phage RB51]
          Length = 305

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 23/173 (13%)

Query: 42  CNMLWKLLQNSRKESI-------ASHFAVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLP 93
            +M+  L+ NS K ++        +   +  D   +  +R +    YK NR K  E  + 
Sbjct: 40  LSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESIW 99

Query: 94  QLP--------LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM 145
                      ++           ++I  +EADD IA        EG  + IIS+D D  
Sbjct: 100 DWEGYFESSHKVIDELKAYMPYIVMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFT 159

Query: 146 QLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           QL   P    +  + ++ + I+    +           + L GD  DN+  + 
Sbjct: 160 QLHKYPNVKQWSPMHKKWVKIKSGSAEIDCMT------KILKGDKKDNVASVK 206


>gi|254409855|ref|ZP_05023636.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196183852|gb|EDX78835.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 207

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 75/214 (35%), Gaps = 27/214 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       ++      + +    T  +     +   + +       D   +V  I ID
Sbjct: 6   VCDRDLPDALLKTYLNAEAIAVDTETMGLIYQRDRLCLVQLC------DPQDRVTVIRID 59

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
                + +              LK+  E +  LK+ H  ++D  +L     I ++     
Sbjct: 60  KKQTEAPN--------------LKQLLEAQTVLKVFHFARFDLAILRQNLDIYVQPVFCT 105

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSN 547
            + S +  +  + H +  +        + E+ KS +SS     + +SD Q+  +A  +  
Sbjct: 106 KIASKLARTYTNRHGLKDLVM---DLEQVELDKSSQSSDWGNPNNLSDEQL-RYAANDVR 161

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
            +L +   L   L  E+   + +   + +  +VS
Sbjct: 162 YLLSVRQKLITMLQREERWQLAQECFEALSVMVS 195


>gi|330858761|ref|YP_004415136.1| putative RNaseH ribonuclease [Shigella phage Shfl2]
 gi|327397695|gb|AEA73197.1| putative RNaseH ribonuclease [Shigella phage Shfl2]
          Length = 305

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 15/165 (9%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM--------LLP 93
            N +   ++ ++          I +  +  +R +    YK NR K  E            
Sbjct: 48  LNSIKFNVKKAKALGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTWDWEGYFES 107

Query: 94  QLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTT 152
              ++           ++I  +EADD IA        EG  + IIS+D D  QL   P  
Sbjct: 108 SHKVIDELKAYMPYIVMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPNV 167

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
             +  + ++ + I+    +           + L GD  DN+  + 
Sbjct: 168 KQWSPMHKKWVKIKSGSAEIDCMT------KILKGDKKDNVASVK 206


>gi|317179181|dbj|BAJ56969.1| dNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori F30]
          Length = 258

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIALVEKYPLKKGARIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L +      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGSFNYKDFLNKDSKEHELWEQV--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|228861556|ref|YP_002854577.1| RNaseH [Enterobacteria phage RB14]
 gi|227438572|gb|ACP30885.1| RNaseH [Enterobacteria phage RB14]
          Length = 305

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 42  CNMLWKLLQNSRKESI-------ASHFAVIFD-YPAVTFRNEIYPDYKANRPKIPEM--- 90
            +M+  L+ NS K ++        +   +  D   +  +R +    YK NR K  E    
Sbjct: 40  LSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTW 99

Query: 91  -----LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM 145
                      ++           ++I  +EADD IA        EG  + IIS+D D  
Sbjct: 100 DWEGYFESSHKVIDELKAYMPYIVMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFT 159

Query: 146 QLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           QL   P    +  + ++ + I+    +           + L GD  DN+  + 
Sbjct: 160 QLHKYPNVKQWSPMHKKWVKIKSGSAEIDCMT------KILKGDKKDNVASVK 206


>gi|9632723|ref|NP_049859.1| RNaseH ribonuclease [Enterobacteria phage T4]
 gi|133162|sp|P13319|RNH_BPT4 RecName: Full=Ribonuclease H; Short=RNase H
 gi|157833933|pdb|1TFR|A Chain A, Rnase H From Bacteriophage T4
 gi|295982228|pdb|3H8J|A Chain A, Native T4 Rnase H In The Absence Of Divalent Metal Ions
 gi|5354347|gb|AAD42554.1|AF158101_141 RNaseH ribonuclease [Enterobacteria phage T4]
 gi|4490554|emb|CAA33812.1| unnamed protein product [Enterobacteria phage T4]
 gi|299780606|gb|ADJ39968.1| RnaseH [Enterobacteria phage T4T]
          Length = 305

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 42  CNMLWKLLQNSRKESI-------ASHFAVIFD-YPAVTFRNEIYPDYKANRPKIPEM--- 90
            +M+  L+ NS K ++        +   +  D   +  +R +    YK NR K  E    
Sbjct: 40  LSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTW 99

Query: 91  -----LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM 145
                      ++           ++I  +EADD IA        EG  + IIS+D D  
Sbjct: 100 DWEGYFESSHKVIDELKAYMPYIVMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFT 159

Query: 146 QLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           QL   P    +  + ++ + I+    +           + L GD  DN+  + 
Sbjct: 160 QLHKYPNVKQWSPMHKKWVKIKSGSAEIDCMT------KILKGDKKDNVASVK 206


>gi|87124930|ref|ZP_01080777.1| putative ribonuclease D [Synechococcus sp. RS9917]
 gi|86167250|gb|EAQ68510.1| putative ribonuclease D [Synechococcus sp. RS9917]
          Length = 213

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 73/218 (33%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      W  +       +       +                   D    V+    D
Sbjct: 12  VFDGDLDAAWADRYAKASRLAVDTEAMGL---------------VHGRDRLCLVQLCDGD 56

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
            +V   +   G+    +     LK   E     K+ H  ++D   L    GI++      
Sbjct: 57  DNVSCVRIGLGQCEAPR-----LKALMEAAAVEKVFHFARFDVAALASGLGIAVDPIFCT 111

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    ++++S++Q+  +A  ++ 
Sbjct: 112 KVASRLARTYSPKHGLKEVVLELVGV---ELDKQAQSSDWGRVEELSEAQLA-YAANDAR 167

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E    + +R     I V+S+++ 
Sbjct: 168 YLLPARERLEVMLRREGRWELAQRC-FRCIPVMSELDR 204


>gi|119487500|ref|ZP_01621110.1| ribonuclease D [Lyngbya sp. PCC 8106]
 gi|119455669|gb|EAW36805.1| ribonuclease D [Lyngbya sp. PCC 8106]
          Length = 208

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 29/223 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +    +  +    T    +    T  +  +  +   + +    +   T+ K+     +
Sbjct: 6   VCDRDISEDILSSYLTADRLAVDTETMGLLPWRDRLCLVQLCD-PKGQVTAVKIAKDQTE 64

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDI 489
                                 LKK  E  + LK+ H  ++D   +L+   I +      
Sbjct: 65  APH-------------------LKKLLEASNTLKVFHFARFDMATLLYYLDIDVNPVFCT 105

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSN 547
            + S +  +    H +  + Q+     + E+ KS +SS    +  +S+ Q+  +A  +  
Sbjct: 106 KIASKLARTYTGRHGLKELVQE---LEQVELDKSSQSSDWGNVGNLSEDQL-NYAANDVR 161

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLD--KPMIDVVSQMEITGI 588
            +L +   L   L  E+ L + +      P I  +  +    I
Sbjct: 162 YLLNVQQKLMVMLEREERLDLAQNCFDCLPTIVTLDLLHYKDI 204


>gi|238506000|ref|XP_002384202.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
 gi|317151109|ref|XP_001824453.2| DNA repair protein rad2 [Aspergillus oryzae RIB40]
 gi|317374884|sp|B8NV37|FEN1_ASPFN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|220690316|gb|EED46666.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
          Length = 395

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 141 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++   +  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEQRKEPILEIHLSRALEGLDMDRKQFIDLCILLG--CDYLEPIPKVGPNTALKLIREF 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++ +     +KK    I E       +R+L +       + P      E  +   
Sbjct: 254 GSLEKVVEHMESDPKKKY--VIPEDWPYQD-ARELFLNPDVREASHPDCDFKWEAPDIEG 310

Query: 272 LISFL 276
           L+ FL
Sbjct: 311 LVEFL 315


>gi|261837858|gb|ACX97624.1| DNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori 51]
          Length = 288

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 77  GRESFRYQLCDHYKQKRHQFNEDFRS-------LLKALKIALVEKYPLKKGARIQGEHCF 129

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 130 EYEADDIISFYKK---KDPQNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 183

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 184 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 236

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 237 SDSEAKEKALLNMRLVNMH 255


>gi|195338293|ref|XP_002035759.1| GM15104 [Drosophila sechellia]
 gi|194129639|gb|EDW51682.1| GM15104 [Drosophila sechellia]
          Length = 1145

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 105/338 (31%), Gaps = 86/338 (25%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +        T+T R         +      LG ++R    +PP  +L+ AD    EL I 
Sbjct: 758  ICPQVVACGTLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 759  AHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + +       +                N  D+H + A  +            R HAK IN
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVIN 868

Query: 806  FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HRFPGIHEYIEKTKNFV- 853
            ++ IYG        L  Q       SEA     + F        +    E+ ++  +   
Sbjct: 869  YARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVYRLREEFHDELDDRAY 928

Query: 854  ----------RQNGYVETIFGR---------------------------------RIHYD 870
                      ++N  V  +F R                                     +
Sbjct: 929  SSYEASRLAIQRNRTVAEVFHRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALE 988

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                P    R +  R  IN  +Q  A D     ++S+   +  H    +  L  HDEL +
Sbjct: 989  ADTGPDQEQRFLPTR--INWVVQSGAVDFLHLMLVSMRWLMGSH---VRFCLSFHDELRY 1043

Query: 931  EVPEEE--ITTASQIIVHSMEKA-CLPKINL-RVPLKV 964
             V EE       +  I + M ++ C+ +I L  +P+ V
Sbjct: 1044 LVKEELSPKAALAMHITNLMTRSFCVSRIGLQDLPMSV 1081


>gi|149239008|ref|XP_001525380.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
           NRRL YB-4239]
 gi|317374907|sp|A5E121|FEN1_LODEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|146450873|gb|EDK45129.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
           NRRL YB-4239]
          Length = 384

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 27/196 (13%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSP 150
             Q    +   +  GIP +     EA+   A         G  V    S D D +    P
Sbjct: 136 RDQNDEAKKLLELMGIPYVNAPC-EAEAQCAELAR-----GGKVFAAASEDMDTLCYEPP 189

Query: 151 TTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
               + T  E +      I  +  I+   +  E+ + L  L G   D    I G+G  TA
Sbjct: 190 QLLRHLTFAEARKMPIDQITYKEAIQGLDMTKEQFIDLCILLG--CDYCETIKGVGPVTA 247

Query: 205 ALLLQEYGNLENIL----INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
             L++E+G+L+NI+     N  + K K         A    +  ++        +     
Sbjct: 248 YKLIKEHGSLDNIVKYLQENPDKTKYKVPENWPYNEARQLFMKPEV--------LPALEV 299

Query: 261 HLILEDCNGPRLISFL 276
            L  ++ +   LI ++
Sbjct: 300 ELKWKEPDLDGLIEYM 315


>gi|238695393|ref|YP_002922586.1| RNaseH ribonuclease [Enterobacteria phage JS10]
 gi|220029529|gb|ACL78463.1| RNaseH ribonuclease [Enterobacteria phage JS10]
          Length = 315

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 19/172 (11%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM-------LLP 93
             N + K +++ +K+        + +  +  +R      YK NR K  +        L  
Sbjct: 53  VLNSIKKNIKDFKKQGYNQLIICVDNSKSGYWRRRYSSYYKKNRAKARDESPFDWEGLFT 112

Query: 94  QLPLVRLATQA-FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPT 151
            + ++    +       + I   EADD IA  T I    G  V I S+D D  QL   P 
Sbjct: 113 AMHIIVDELEQNMPYIVMNIDTIEADDHIAVLTRILTALGHPVMIGSSDGDFTQLHKFPG 172

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVC--LQALTGDSIDNIPGIPGIGY 201
              +  ++++      V  K G   + ++    + + GD  DN+  I   G 
Sbjct: 173 VKQWSPMQKK-----FVKTKSG---DALLDCVTKVIKGDRKDNVASIKVRGD 216


>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa]
 gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]
          Length = 855

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 109/327 (33%), Gaps = 13/327 (3%)

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCN-GPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
           S  L   +   P  + ++       N    +              R  T    D+A+   
Sbjct: 80  SNDLFKEKLQFPSDVDIDEAYDWLVNVNDEIFERFDTSIDEFKRVREETALSDDSASCAG 139

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V   +   +NK   +  +      I T +           NS +  + ++LER +  S+ 
Sbjct: 140 VDSGVKVADNKKGILGNKAKVPFHIPTIRRPQEEHNILVNNSNRGFEHVWLERSEDGSRA 199

Query: 362 PINNDSYTKIVNTKDIQQWVQKL----ETIGSASFKIITDTMDAFHSKPIAI-AIST-LD 415
               +  + +         V+                    +    +K   +   +  L+
Sbjct: 200 IHPLEKLSVLDFVDKRIGDVEPAPPLPTESTPFKLVEEVKDLKELAAKLRGVNEFAVDLE 259

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                SF+  T  + +S  T         L   +  YL++ F++    K+ H    D + 
Sbjct: 260 HNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIVW 319

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R +GI +    D    S VL      + +  +   +   T K   K  +++    +  
Sbjct: 320 LQRDFGIYICNLFDTGQASRVL--KLERNSLEYLLHHFCGVTAK---KEYQNAEWRLRPL 374

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLI 561
             ++  +A E+++ +L ++ L+R  L+
Sbjct: 375 PDEMIRYAREDTHYLLHIYDLMRALLL 401


>gi|307943000|ref|ZP_07658345.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
 gi|307773796|gb|EFO33012.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
          Length = 206

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 26/203 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K+    +    +  + +    T  ++    +   + +S  D   D          
Sbjct: 2   TIRFHKNDLSDLTHYVSCDAVAVDTETLGLNLLRDRLCVVQLSPGDGSADV--------- 52

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
              V   +  T    LT            +    KI H  ++D  +L    GI +     
Sbjct: 53  ---VQIEKGMTAAPNLTA--------LLSDPARTKIFHYARFDVAILRQNLGIHVDPVWC 101

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSN 547
             + S +  +    H +  I ++ L     +I K ++SS    ++++D+Q+  +A  +  
Sbjct: 102 TKIASKLCRTYTDRHGLKDITRELLGV---DISKQQQSSDWAAEQLTDAQLA-YAASDVL 157

Query: 548 VILQLWLLLRPKLIVEKLLHVYE 570
            +  L   L   L  E+  H+ E
Sbjct: 158 HLHALKEKLEFMLRREERTHLAE 180


>gi|145245469|ref|XP_001395002.1| DNA repair protein rad2 [Aspergillus niger CBS 513.88]
 gi|317374885|sp|A5ABU3|FEN1_ASPNC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|134079702|emb|CAK97128.1| unnamed protein product [Aspergillus niger]
          Length = 395

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 24/189 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 141 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFETPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++  G+  ++ + L  L G   D +  IP +G  TA  L++++
Sbjct: 196 FSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLG--CDYLEPIPKVGPNTALKLIRDH 253

Query: 212 GNLENILINASRIKQKKR---RENILEYAETARLSRKLVMLRTDVPITIPLE-HLILEDC 267
           G+LE +L       +KK     +   E A    L+        DV      E     E  
Sbjct: 254 GSLEKVLEFMENDPKKKFVVPEDWPYEDARELFLN-------PDVRDANDPECDFKWEAP 306

Query: 268 NGPRLISFL 276
           + P L+ FL
Sbjct: 307 DVPGLVDFL 315


>gi|308184229|ref|YP_003928362.1| hypothetical protein HPSJM_02245 [Helicobacter pylori SJM180]
 gi|308060149|gb|ADO02045.1| hypothetical protein HPSJM_02245 [Helicobacter pylori SJM180]
          Length = 272

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 67  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIALVEKYPLKKGAKIQGEHCF 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 120 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 174 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 226

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 227 SDSEAKEKALLNMRLVNMH 245


>gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington]
 gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington]
          Length = 203

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 26/201 (12%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                   +  G  +    T  ++    K   +  S  +               L    +
Sbjct: 7   QNDLPNNFKLEGDIAVDTETMGLNIHRDKLCLLQFSNGNGAAH-----------LVHFIN 55

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYV 495
           QD T  N         LK    ++   KI H  ++D   + +Y  I +       + S +
Sbjct: 56  QDYTAPN---------LKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWL 554
           + +   SH +  + ++ L+     I K ++SS    D +S  Q +E+A ++   + QL  
Sbjct: 107 VRTYTDSHGLKDLCRELLNIN---ISKQQQSSYWGTDNLSLEQ-KEYAAKDVLYLHQLKD 162

Query: 555 LLRPKLIVEKLLHVYERLDKP 575
           +L+  L  E  L +   + + 
Sbjct: 163 ILQKMLFRENRLELAHEIFRF 183


>gi|17136648|ref|NP_476821.1| tamas [Drosophila melanogaster]
 gi|27923967|sp|Q27607|DPOG1_DROME RecName: Full=DNA polymerase subunit gamma-1, mitochondrial; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            Short=Protein tamas; Flags: Precursor
 gi|7298099|gb|AAF53338.1| tamas [Drosophila melanogaster]
 gi|201065799|gb|ACH92309.1| FI06005p [Drosophila melanogaster]
          Length = 1145

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 104/338 (30%), Gaps = 86/338 (25%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +        T+T R         +      LG ++R    +PP  +L+ AD    EL I 
Sbjct: 758  ICPQVVACGTLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 759  AHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + +       +                N  D+H + A  +            R HAK IN
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVIN 868

Query: 806  FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HRFPGIHEYIEKTKNFVR 854
            ++ IYG        L  Q       SEA     + F        +    E+ ++ ++   
Sbjct: 869  YARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVYRLREEFHDELEDRAY 928

Query: 855  Q------------------------NGYVETIFGRR--------------------IHYD 870
                                      G  E+    R                       +
Sbjct: 929  SSYEASRLAIQRNRTLAEVFHRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALE 988

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                P+   R +  R  IN  +Q  A D     ++S+   +  H    +  L  HDEL +
Sbjct: 989  ADTGPEQEQRFLPTR--INWVVQSGAVDFLHLMLVSMRWLMGSH---VRFCLSFHDELRY 1043

Query: 931  EVPEEE--ITTASQIIVHSMEKA-CLPKINL-RVPLKV 964
             V EE       +  I + M ++ C+ +I L  +P+ V
Sbjct: 1044 LVKEELSPKAALAMHITNLMTRSFCVSRIGLQDLPMSV 1081


>gi|19527699|gb|AAL89964.1| AT02241p [Drosophila melanogaster]
          Length = 1145

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 104/338 (30%), Gaps = 86/338 (25%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +        T+T R         +      LG ++R    +PP  +L+ AD    EL I 
Sbjct: 758  ICPQVVACGTLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 759  AHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + +       +                N  D+H + A  +            R HAK IN
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVIN 868

Query: 806  FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HRFPGIHEYIEKTKNFVR 854
            ++ IYG        L  Q       SEA     + F        +    E+ ++ ++   
Sbjct: 869  YARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVYRLREEFHDELEDRAY 928

Query: 855  Q------------------------NGYVETIFGRR--------------------IHYD 870
                                      G  E+    R                       +
Sbjct: 929  SSYEASRLAIQRNRTLAEVFHRPKWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALE 988

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                P+   R +  R  IN  +Q  A D     ++S+   +  H    +  L  HDEL +
Sbjct: 989  ADTGPEQEQRFLPTR--INWVVQSGAVDFLHLMLVSMRWLMGSH---VRFCLSFHDELRY 1043

Query: 931  EVPEEE--ITTASQIIVHSMEKA-CLPKINL-RVPLKV 964
             V EE       +  I + M ++ C+ +I L  +P+ V
Sbjct: 1044 LVKEELSPKAALAMHITNLMTRSFCVSRIGLQDLPMSV 1081


>gi|76364187|sp|Q4JAN1|FEN_SULAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 349

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 37/217 (17%)

Query: 79  DYKANRPKIPEMLLPQLPLVRL---ATQAFGIPAIEIQGFEADDIIAT----YTYIAEKE 131
           +Y+  R      +     +V        A GIP ++  G    +         ++ A  +
Sbjct: 113 EYREIRKYAQAAVRLSNEMVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQ 172

Query: 132 GFAVTI-----------ISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180
            +   +           IS  + L     P   +Y  +K E I++E ++KK GI  E+++
Sbjct: 173 DYDSLLFGAKRLVRNITISGKRKL-----PNKDVYVEIKPELIELESLLKKLGINREQLI 227

Query: 181 CLQALTGDSIDNIP-GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
            +  L G   D  P G+ GIG KTA  ++++Y N+EN +     I+  K   +I E    
Sbjct: 228 DIAILIG--TDYNPDGVKGIGVKTALRIIKKYNNIENAIEK-GEIQLSKINFDIREI--- 281

Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
               RKL        +  P E L L +CN   +I  L
Sbjct: 282 ----RKL---FITPEVKKPTERLELAECNEREIIELL 311


>gi|195472713|ref|XP_002088644.1| GE11427 [Drosophila yakuba]
 gi|194174745|gb|EDW88356.1| GE11427 [Drosophila yakuba]
          Length = 1145

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 104/338 (30%), Gaps = 86/338 (25%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +        T+T R         +      LG ++R    +PP  +L+ AD    EL I 
Sbjct: 758  ICPQVVACGTLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 759  AHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + +       +                N  D+H + A  +            R HAK IN
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVIN 868

Query: 806  FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HRFPGIHEYIEKTKNFVR 854
            ++ IYG        L  Q       SEA     + F        +    E+ ++ ++   
Sbjct: 869  YARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVYRLREEFHDELEDRAY 928

Query: 855  Q------------------------NGYVETIFGRR--------------------IHYD 870
                                      G  E+    R                       +
Sbjct: 929  SSYEASRLAIQRNRTLAEVFHRPNWQGGTESAMFNRLEEIATGSEPRTPFLGGRLSRALE 988

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                P+   R +  R  IN  +Q  A D     ++S+   +  H    +  L  HDEL +
Sbjct: 989  ADGGPEQEQRFLPTR--INWVVQSGAVDFLHLMLVSMRWLMGSH---VRFCLSFHDELRY 1043

Query: 931  EVPEEE--ITTASQIIVHSMEKA-CLPKINL-RVPLKV 964
             V EE       +  I + M ++ C+ +I L  +P+ V
Sbjct: 1044 LVKEELSPKAALAMHITNLMTRSFCVSRIGLKDLPMSV 1081


>gi|195397702|ref|XP_002057467.1| GJ18089 [Drosophila virilis]
 gi|194141121|gb|EDW57540.1| GJ18089 [Drosophila virilis]
          Length = 1150

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 138/440 (31%), Gaps = 114/440 (25%)

Query: 596  KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
            +Q   +IS+    LE+N Y  SG   N     Q+ D     LK P             ++
Sbjct: 636  RQFYKKISQRQQQLEQN-YKGSGVWCN-----QVLDDCCFFLKLPHKNGPSFRVGNPLSK 689

Query: 656  DL-----EQINCGDNPIIKNILEWRQLSKIKSTY----------------ADSLPNHINK 694
            D      E      +P  +      +++++ S +                A+ LP+ +  
Sbjct: 690  DFLNKFSEHALSSGDPTCQAAARVIEIARMMSYWRNNQDRILGQMVVWLQAEELPSELRI 749

Query: 695  RTQRVH-----TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
              +R+          +A T+T R         +      +G ++R    +PP  KL+ AD
Sbjct: 750  HAKRMAYGAIVPQIVVAGTLTRRAMESTWMTASNSRANRIGSELRSMVQAPPGYKLVGAD 809

Query: 750  YSQIELRILAHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQ 796
                EL I + +       +                N  D+H + A         KV   
Sbjct: 810  VDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGSDMHSITA---------KVVGI 860

Query: 797  MRRHAKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHR------FPGIHEY 845
             R HAK +N++ IYG        L  Q    +  +EA     + F        +    E+
Sbjct: 861  SRDHAKVLNYARIYGAGQQFAETLLQQFNPTLSATEAKAKAMKMFAATKGKRVYRLREEF 920

Query: 846  IEKTKN------FVRQ------------------NGYVETIFGRR--------------- 866
             ++ ++        ++                  +G  E+    R               
Sbjct: 921  HDEQEDRPYSSYEAKRLALQRNRPVGEVFHRPSWHGGTESAMFNRLEEIATREQPETPFL 980

Query: 867  -----IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
                    +         R +  R  +N  +Q  A D     ++S+   L  H    +  
Sbjct: 981  NCRLSRALESHGESDQEQRFLPTR--VNWVVQSGAVDFLHLMLVSMRWLLGTH---ARFC 1035

Query: 922  LQIHDELVFEVPEEEITTAS 941
            L  HDEL + V +E    A+
Sbjct: 1036 LSFHDELRYLVKDELAAKAA 1055


>gi|1401344|gb|AAC47290.1| DNA polymerase gamma [Drosophila melanogaster]
          Length = 1145

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 104/338 (30%), Gaps = 86/338 (25%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +        T+T R         +      LG ++R    +PP  +L+ AD    EL I 
Sbjct: 758  ICPQVVACGTLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIA 817

Query: 759  AHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + +       +                N  D+H + A  +            R HAK IN
Sbjct: 818  SVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---------GISRDHAKVIN 868

Query: 806  FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HRFPGIHEYIEKTKNFVR 854
            ++ IYG        L  Q       SEA     + F        +    E+ ++ ++   
Sbjct: 869  YARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRVYRLREEFHDELEDRAY 928

Query: 855  Q------------------------NGYVETIFGRR--------------------IHYD 870
                                      G  E+    R                       +
Sbjct: 929  SSYEASRLAIQRNRTLAEVFHRPKWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALE 988

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                P+   R +  R  IN  +Q  A D     ++S+   +  H    +  L  HDEL +
Sbjct: 989  ADTGPEQEQRFLPTR--INWVVQSGAVDFLHLMLVSMRWLMGSH---VRFCLSFHDELRY 1043

Query: 931  EVPEEE--ITTASQIIVHSMEKA-CLPKINL-RVPLKV 964
             V EE       +  I + M ++ C+ +I L  +P+ V
Sbjct: 1044 LVKEELSPKAALAMHITNLMTRSFCVSRIGLQDLPMSV 1081


>gi|207109869|ref|ZP_03244031.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_CA4C1]
          Length = 147

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 19/153 (12%)

Query: 461 HFLKIGHNIKYDKLVL-HRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           H   IGH++K     L  +Y + +      D  +++++ +  +       + +++L    
Sbjct: 7   HAQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKV--GFDEVLKEYL---- 60

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLD 573
                 ++  IP +KI D + +   +E      N + +L        + E LL +   ++
Sbjct: 61  ------KEELIPHEKIKDFKAKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAREVE 114

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
            P + V+  ME  G +ID    K +  E    L
Sbjct: 115 TPFVKVLMGMEFQGFKIDAPYFKCLEQEFKNEL 147


>gi|195119063|ref|XP_002004051.1| GI19730 [Drosophila mojavensis]
 gi|193914626|gb|EDW13493.1| GI19730 [Drosophila mojavensis]
          Length = 1143

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 102/333 (30%), Gaps = 83/333 (24%)

Query: 680  IKSTYADSLPNHINKRTQR-----VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
            +   +++ LP  +    QR     +     +A T+T R         +      +G ++R
Sbjct: 730  VVWLHSEHLPGDLQAHAQRTSYGAILPQVVVAGTLTRRAMESTWMTASNSRANRIGSELR 789

Query: 735  RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE-------------NSLDIHRMV 781
                +PP  KL+ AD    EL I + +       +                N  D+H + 
Sbjct: 790  SMVQAPPGYKLVGADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGSDMHSIT 849

Query: 782  AAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF 836
            A         KV    R HAK +N++ IYG        L  Q    +  +EA     + F
Sbjct: 850  A---------KVVGISRDHAKVLNYARIYGAGQQFAETLLQQFNPTLSATEAKAKAMKMF 900

Query: 837  HR------FPGIHEYIEKTKNFV-----------RQNGYVETIFGRRIHYDEINSPKSSI 879
                    +    E+ ++ ++             ++N  V  IF R        S   + 
Sbjct: 901  AATKGKRVYRLREEFHDEQEDKAYSSYEARRFALQRNRSVSEIFHRPSWQGGTESAMFNR 960

Query: 880  -------------------------------RNINERAAINAPIQGSAADITRRAMISVH 908
                                                   IN  +Q  A D     ++S+ 
Sbjct: 961  LEEIATREQPETPFLNCRLSRALDSNGEADLEQRFLPTRINWVVQSGAVDFLHLMLVSMR 1020

Query: 909  KSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
              L       +  L  HDEL + V +E    A+
Sbjct: 1021 WLL---GPHARFCLSFHDELRYLVKDEMAPKAA 1050


>gi|254718341|ref|ZP_05180152.1| hypothetical protein Bru83_02133 [Brucella sp. 83/13]
 gi|265983300|ref|ZP_06096035.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306839563|ref|ZP_07472369.1| 3'-5' exonuclease [Brucella sp. NF 2653]
 gi|264661892|gb|EEZ32153.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306405349|gb|EFM61622.1| 3'-5' exonuclease [Brucella sp. NF 2653]
          Length = 205

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 24/180 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            + + +    T  ++    +   + IS  D   D                 Q   G+   
Sbjct: 17  QVDAVAIDTETLGLNPHRDRLCMVQISPGDGTADV---------------IQIEAGQKKA 61

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L K  ++    KI H  ++D  VL   +G   +      + S +  +    H 
Sbjct: 62  PN-----LVKLLKDRSITKIFHFGRFDLAVLANAFGTMPQPVFCTKIASKLTRTYTDRHG 116

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  I  + L  +   I K ++SS    ++      E+A  +   + +L  +L  +L  + 
Sbjct: 117 LKEICSELLDVS---ISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDG 173


>gi|78780061|ref|YP_398173.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9312]
 gi|78713560|gb|ABB50737.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9312]
          Length = 211

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK   E+E   KI H  ++D   L    GI+ +      + S +  +  + H +  +  +
Sbjct: 72  LKALLEDEKITKIFHYARFDVAALKCNLGINTKNIFCTKIASKLARTYTNKHGLKDLINE 131

Query: 512 WLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            L     E+ KS +SS     + ++  Q+ ++A  +   +++    L+  L  E    + 
Sbjct: 132 LLGV---ELDKSSQSSDWGSKEDLTKDQL-DYASNDVRYLIEAMHKLKVILDRENRYELA 187

Query: 570 ERL 572
           ++ 
Sbjct: 188 QKC 190


>gi|226294510|gb|EEH49930.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb18]
          Length = 528

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   SP    + T
Sbjct: 274 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 328

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP IG  TA  L++++
Sbjct: 329 FSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLG--CDYLDPIPKIGPNTALKLIRDH 386

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E     + +R+L           P      E  +   
Sbjct: 387 GSLEKVVEAIESDPKKKY--VIPEDWPY-KDARELFFDPDVRKADHPDCDFKWEAPDVEG 443

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 444 LVKFLVE 450


>gi|188527234|ref|YP_001909921.1| hypothetical protein HPSH_02205 [Helicobacter pylori Shi470]
 gi|188143474|gb|ACD47891.1| hypothetical protein HPSH_02205 [Helicobacter pylori Shi470]
          Length = 258

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIALVEKYPLKKGARIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSRKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKKHELWEQI--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|317177237|dbj|BAJ55026.1| dNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori F16]
          Length = 258

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE--------------IQ 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIAIVERYPLKKGARIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|261839273|gb|ACX99038.1| hypothetical protein HPKB_0430 [Helicobacter pylori 52]
          Length = 258

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIALVEKYPLKKGARIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|308182595|ref|YP_003926722.1| hypothetical protein HPPC_02145 [Helicobacter pylori PeCan4]
 gi|308064780|gb|ADO06672.1| hypothetical protein HPPC_02145 [Helicobacter pylori PeCan4]
          Length = 278

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 67  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIALVEKYPLKKGARIQGEHCF 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 120 EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L +      +      I+  K +E++
Sbjct: 174 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNKDAKEHELWEQI--IQAFKIKEDL 226

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 227 SDSEAKEKALLNMRLVNMH 245


>gi|299779187|ref|YP_003734381.1| RNaseH ribonuclease [Enterobacteria phage IME08]
 gi|298105916|gb|ADI55560.1| RNaseH ribonuclease [Enterobacteria phage IME08]
          Length = 327

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 19/172 (11%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM-------LLP 93
             N + K +++ +K+        + +  +  +R      YK NR K  +        L  
Sbjct: 65  VLNSIKKNIKDFKKQGYNQLIICVDNSKSGYWRRRYSSYYKKNRAKARDESPFDWEGLFT 124

Query: 94  QLPLVRLATQA-FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPT 151
            + ++    +       + I   EADD IA  T I    G  V I S+D D  QL   P 
Sbjct: 125 AMHIIVDELEQNMPYIVMNIDTIEADDHIAVLTRILTALGHPVMIGSSDGDFTQLHKFPG 184

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVC--LQALTGDSIDNIPGIPGIGY 201
              +  ++++      V  K G   + ++    + + GD  DN+  I   G 
Sbjct: 185 VKQWSPMQKK-----FVKTKSG---DALLDCVTKVVKGDRKDNVASIKVRGD 228


>gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
 gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
          Length = 339

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 39/201 (19%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---- 154
           +      GIP ++    E +   A         G      S D D +   +P        
Sbjct: 136 KKLLDYMGIPWVQAPS-EGEAQAAYMAKK----GDTYASASQDFDSLLFGAPNLVRNLAI 190

Query: 155 -----------YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
                      Y  VK E I +E  +K  GI  E++V +  L G   D   GI G+G KT
Sbjct: 191 TGKRKLPRKNVYVDVKPEIILLEENLKNLGISREQLVDIGILVG--TDYNEGIKGVGPKT 248

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           A  L+++YG+LE I               I E   T    +++  +  + P+T     L 
Sbjct: 249 ALKLIKKYGSLEKI---------------IQERGYTIPHYKEIKDIFLNPPVTDSY-KLE 292

Query: 264 LEDCNGPRLISFL-KALEFTK 283
               +  +LI FL    +F++
Sbjct: 293 WRAFDEEKLIEFLCDEHDFSR 313


>gi|308061777|gb|ADO03665.1| hypothetical protein HPCU_02460 [Helicobacter pylori Cuz20]
          Length = 258

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E         +   +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRHQFDEDF-------KSLLKALKIALVEKYPLKKGARIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|284164367|ref|YP_003402646.1| flap structure-specific endonuclease [Haloterrigena turkmenica DSM
           5511]
 gi|284014022|gb|ADB59973.1| flap structure-specific endonuclease [Haloterrigena turkmenica DSM
           5511]
          Length = 325

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 97/301 (32%), Gaps = 62/301 (20%)

Query: 7   LFLVDGSSFIYRAFY-------ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +  VD  +++YR  Y           +    DG  V  + G    L K  +N   +    
Sbjct: 23  VVAVDAHNWLYR--YLTTTVKWTDSDVYTTADGTEVANLVGIVQGLPKFFEN---DITP- 76

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-------------------PLV-- 98
              ++FD      + +     +  R    E L                       P +  
Sbjct: 77  --VMVFDGGPSELKEDEIESRRDQRRTYEEQLEVAREEGDQVAIAQLESRTQRLTPTIQE 134

Query: 99  --RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
             R   +   +P +E    E +   A      + +     + S D D +   SP T    
Sbjct: 135 TSRELLRRLDVPIVEAPA-EGEAQAAHMVRRGDAD----YVGSEDYDALLFGSPLTLRQL 189

Query: 157 TVKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           T K   E +D+E  +    +  E+++    L G   D   G+ GIG KTA   + E+G+L
Sbjct: 190 TSKGDPELMDLEATLDHHDLTLEQLIDAAILIG--TDFNEGVSGIGPKTAIKAITEHGDL 247

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274
            ++L +               + E     R+L     D  +T   E     D +      
Sbjct: 248 WSVLEDRG------------AHIEYGDRVRQL---FRDPNVTDDYEFDTDLDPDLEAARE 292

Query: 275 F 275
           +
Sbjct: 293 Y 293


>gi|315047298|ref|XP_003173024.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
 gi|311343410|gb|EFR02613.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
          Length = 459

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++    EA+   A      +  G A    S D D +   +P    + T
Sbjct: 205 CKRLLGLMGIPYLDAP-TEAEAQCAVLAKAGKVFGAA----SEDMDTLCFAAPVLLRHLT 259

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +E V++  G+   + V L  L G   D +  IP +G  TA  L++++
Sbjct: 260 FSEQRKEPILEIHLEKVLEGLGMDMTQFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 317

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G LE ++         +R  +        + +R+L       P   P         +   
Sbjct: 318 GTLEKVVEAMR--ATPRRNTSSRTTGPYLQ-ARELFFNPDVRPADAPECDFKWTAPDVDG 374

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 375 LVRFLVE 381


>gi|195437646|ref|XP_002066751.1| GK24652 [Drosophila willistoni]
 gi|194162836|gb|EDW77737.1| GK24652 [Drosophila willistoni]
          Length = 1162

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 110/386 (28%), Gaps = 81/386 (20%)

Query: 622  NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681
            N  S   L       L   + +     +    A+ +       + I+  ++ W Q   + 
Sbjct: 701  NPLSRDFLNKFSENVLSSGNPSCQAAARVIEIARMMSYWRNNRDRIMNQMVVWLQRECLP 760

Query: 682  STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            S     L    +     +        T+T R         +      LG ++R    +PP
Sbjct: 761  SGLTSHLQ---HTSYGAICPQVVACGTLTRRAMEPTWMTASNSRADRLGSELRAMVQAPP 817

Query: 742  TKKLISADYSQIELRILAHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGV 788
              +L+ AD    EL I + +       +                N  D+H + A  +   
Sbjct: 818  GYRLVGADVDSQELWIASVLGDAYAWGEHGATPLGWMTLSGNKSNQSDMHSITAKAV--- 874

Query: 789  NIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIH 843
                     R HAK IN++ IYG        L  Q       SEA     + F    G  
Sbjct: 875  ------GISRDHAKVINYARIYGAGQQFAENLLQQFNPTFSASEAKAKAMKMFSITKGKR 928

Query: 844  EY-----------------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI------- 879
             Y                  E T+  V++N  +  +F R        S   +        
Sbjct: 929  IYRLRDEFHDELEDRPYSGYEATRLAVQRNRPISEVFHRSSWQGGTESAMFNRLEEIATE 988

Query: 880  ------------------------RNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915
                                            IN  +Q  A D     ++S+   +  H 
Sbjct: 989  AQPKTPFLGCRLSRALEADTGADQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSH- 1047

Query: 916  LATKMLLQIHDELVFEVPEEEITTAS 941
               +  L  HDEL + V E+    A+
Sbjct: 1048 --ARFCLSFHDELRYLVREDMAPKAA 1071


>gi|157414190|ref|YP_001485056.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215]
 gi|157388765|gb|ABV51470.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215]
          Length = 211

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           +LK   E+E   KI H  ++D   L     I+ +      + S +  +  + H +  +  
Sbjct: 71  HLKALLEDEKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLIN 130

Query: 511 KWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           + L     E+ KS +SS    ++    +  ++A  +   +++    L+  L  E    + 
Sbjct: 131 ELLGI---ELDKSSQSSDWGSNEDLTKEQLDYAANDVRYLIEAMHKLKVILKRENRYELA 187

Query: 570 ERL 572
           ++ 
Sbjct: 188 QKC 190


>gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E]
 gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii]
 gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22]
          Length = 203

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 74/201 (36%), Gaps = 26/201 (12%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                   +  G  +    T  ++    K   +  S  + +             L    +
Sbjct: 7   QNDLPSNFKLEGDIAVDTETMGLNIHRDKLCLLQFSNGNGEAH-----------LVHFIN 55

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYV 495
           QD T  N         LK    ++   KI H  ++D   + +Y  I +       + S +
Sbjct: 56  QDYTAPN---------LKMLLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWL 554
           + +   SH +  + ++ L+     I K ++SS    D +S  Q +E+A ++   + QL  
Sbjct: 107 VRTYTDSHGLKDLCRELLNIN---ISKQQQSSYWGTDHLSLEQ-KEYAAKDVLYLHQLKD 162

Query: 555 LLRPKLIVEKLLHVYERLDKP 575
           +L+  L+ E  L +   + + 
Sbjct: 163 ILQKMLLRENRLELAHDIFRF 183


>gi|164655431|ref|XP_001728845.1| hypothetical protein MGL_4012 [Malassezia globosa CBS 7966]
 gi|159102731|gb|EDP41631.1| hypothetical protein MGL_4012 [Malassezia globosa CBS 7966]
          Length = 1518

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 91/288 (31%), Gaps = 52/288 (18%)

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
            R   +        T+T R         +   K  +G +++    + P   ++ AD    E
Sbjct: 909  RRGMILPQVITMGTVTRRAIEKTWLTASNAKKNRIGSELKSMVKASPGWSIVGADVDSEE 968

Query: 755  LRILAHIA----KITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
            L I + +      I     +             D+H   A+ I G          R  AK
Sbjct: 969  LWICSVMGDAQFGIHGATAIGWMTLEGSKAQGTDLHSKTAS-ILGT--------SRDQAK 1019

Query: 803  TINFSIIYGISPFR-----LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857
              N+S IYG          L     +P  EA+   K+ +    G +      K F R+  
Sbjct: 1020 VFNYSRIYGAGIRHAMQLLLKANPSMPVDEASRRAKQLYAATKGQNT--RSQKYFGRRFW 1077

Query: 858  YVETIFGRRIHYDEIN------------------------SPKSSIRNINERAAINAPIQ 893
            Y  T        +EI                           + S +     + IN  +Q
Sbjct: 1078 YGGTESFVFNKLEEIALSEQPRTPALDCGITAALSKQFLPKTRGSAQQDYMPSRINWVVQ 1137

Query: 894  GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             S  D     + S+    + + +  + +L +HDE+ +   + +   A+
Sbjct: 1138 SSGVDYLHLLITSMTHLCKTYDIEARFMLSVHDEVRYLARDSDKYRAA 1185


>gi|193659550|ref|XP_001944971.1| PREDICTED: flap endonuclease 1 [Acyrthosiphon pisum]
          Length = 380

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 89/281 (31%), Gaps = 56/281 (19%)

Query: 28  RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPK 86
              DG   + I G F   +  L    +          +FD      ++         R +
Sbjct: 54  TSADGETTSHIMGTFYRTIRLLENGIKPVY-------VFDGKPPQMKSSELEKRADRRQE 106

Query: 87  IPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIAT 123
             + L                              +   +  G+P +E    EA+   A 
Sbjct: 107 AQKSLEKAEEAGDATGIDKFSKRLVKVTSTHTTECKELLKLMGVPFVEAPC-EAEAQCAA 165

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
                   G      + D D +   SP    + T  E      ++  ++ V++   +  +
Sbjct: 166 MVK----AGKVYATATEDMDALTFGSPVLLRHMTFSEARKMPIQEFQLDSVLETMEMSRD 221

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L  L G   D    I G+G K A  L+++Y +LENI+ N    K +   +    Y 
Sbjct: 222 EFIDLCILLG--CDYCNSIKGVGPKRAIELMRQYKSLENIIENLDTKKYQVPEDW--PYK 277

Query: 238 ETARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
           E  RL  +        P     E   L   D +   L+ FL
Sbjct: 278 EARRLFIE--------PEITDPETIDLKWIDPDEEGLVKFL 310


>gi|302665120|ref|XP_003024173.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
 gi|291188218|gb|EFE43562.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
          Length = 1120

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 90/272 (33%), Gaps = 36/272 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    I++ 
Sbjct: 778  KKDRRDADEVSQIMVTECQQLLRLFGLPYITAP-MEAEAQCAELVALGLVDG----IVTD 832

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D    +   T +Y  +  +   +E      + K++ +  +K++    L G   D   G
Sbjct: 833  DSDTF--LFGGTRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLISFSHLLG--SDYTEG 888

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRI---------KQKKRRENILEYAETARL---- 242
            IPGIG  TA  +L E+ +LE      S++              R+   +      L    
Sbjct: 889  IPGIGPVTALEILTEFSDLEEFRDWWSQVQLGNKIPDDPHAGFRKKFKKNTTKLFLPPGF 948

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              + +     +  +            +   +  F        L+  V  + +     + P
Sbjct: 949  PDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQF--------LMATVGWSPERTDEVLVP 1000

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
            V+ D N  E +G                 F+ 
Sbjct: 1001 VIRDANRREQEGTQSNITGFFQGPQGAGAFAP 1032


>gi|167600414|ref|YP_001671914.1| 5'-3' exonuclease [Pseudomonas phage LUZ24]
 gi|161168277|emb|CAP45442.1| 5'-3' exonuclease [Pseudomonas phage LUZ24]
          Length = 276

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 83/225 (36%), Gaps = 41/225 (18%)

Query: 45  LWKLLQNSRKESIASHFAVIFDYPAVTFRNEI--YPDYKANRPKIPEMLLPQLPLVRLAT 102
           + ++++    +    +           FR E+     YK  R      +  + P      
Sbjct: 28  VEQIIKRVNADECEIYL-----TGQGNFRLELAKIKQYKGTR------IGLEKPHHWETV 76

Query: 103 QAF---GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTV 158
            A       AI   G EADD +        +EG   T  S DKD+ Q+            
Sbjct: 77  SARLKDKWGAITFHGIEADDWLGI---RGTEEGANFTACSRDKDIRQVPGCYHYSWPCGD 133

Query: 159 KEEKIDIEHV---------IKKWGIPPEK-----------MVCLQALTGDSIDNIPGIPG 198
            + ++    V          + +G+   +            +  Q L GDS+DNIPG+PG
Sbjct: 134 SQPELGPFQVDGLGRVSASWRMYGVKKPQKSWKLEGNGTAFLYGQLLVGDSVDNIPGLPG 193

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY-AETARL 242
            G KTAA LL +  +  ++    +   Q+K  +N  EY  E  RL
Sbjct: 194 TGPKTAADLLGKLSSERDLFAACAYAYQQKYGDNWKEYLLENFRL 238


>gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
 gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
          Length = 209

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 70/204 (34%), Gaps = 25/204 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       + +     + +    T  +     +   + +     K      V  I I 
Sbjct: 8   VSDRDLDAASLSEYLQSEAIAVDTETMGLLPQRDRLCLVQLCNSQGK------VTAICIA 61

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
                + +              LK+  E  H LK+ H  ++D   L H   I ++     
Sbjct: 62  KGQTEAPN--------------LKQLLEATHILKVFHFARFDVATLRHNLEIQVQPVFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +  + H +  + Q+     + E+ KS +SS   + ++ S+ Q  +A  +   
Sbjct: 108 KIASKLARTYTNLHGLKDVVQE---LEQVELDKSAQSSDWGNAVNLSETQLSYAANDVRY 164

Query: 549 ILQLWLLLRPKLIVEKLLHVYERL 572
           +L +   L   L  E    + ++ 
Sbjct: 165 LLNVQQKLTQMLEREGRWELAQQC 188


>gi|167464945|ref|ZP_02330034.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase
           domains [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384415|ref|ZP_08058101.1| hypothetical protein PL1_0947 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150773|gb|EFX44233.1| hypothetical protein PL1_0947 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 358

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 15/161 (9%)

Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT--------RKE 519
            +YD  V    G  +RG   D +   ++L+     + +  + +K+  Y          ++
Sbjct: 4   ARYDLHVAQNDGYEIRGCVWDTLDAMHLLNEHEEKYGLKILVEKYGKYFGIPGPIYTFED 63

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE--KLLHVYERLDKPMI 577
           +  +   + P    S   V  +AI++     +L       +     +LL  Y  +D  + 
Sbjct: 64  LFGNGSPA-PF---SVELVGIYAIKDVLYSWKLCEWQMEMMRKSPGRLLECYAEIDSKLP 119

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           +V   M   G +ID D LK + AE    L   + ++ +  G
Sbjct: 120 EVDVFMARCGFEIDLDGLKALEAEFEPALEQAKRDVIETYG 160



 Score = 41.6 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 75/186 (40%), Gaps = 7/186 (3%)

Query: 546 SNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           +  I +     + ++   E  +   +R+    I+    +  TG++  +D  +++    ++
Sbjct: 175 AKKIAKWTEAQKARIKRWEDSVKKQQRI----IEECESVGKTGLKKYRDAKERLLKLYAE 230

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCG 663
                 E        +F++++   L  +++  L       K K G+ ++TA ++ +    
Sbjct: 231 KPAPAVEEHAPRYVTEFSITNGNHLAYLIYDHLGIEDVTPKFKRGKERSTASEVMEEYYE 290

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723
               +K +       K+ +TY   +P+ +     R+H+ +    T TGR +S     + I
Sbjct: 291 TETALKPLATVAVYEKLLNTYIRKIPHALEADG-RLHSEFKAGGTATGRYSSSGYKGRPI 349

Query: 724 PIKTDL 729
            +  + 
Sbjct: 350 DVLDEF 355


>gi|317181767|dbj|BAJ59551.1| dNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori F57]
          Length = 258

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE--------------IQ 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIAIVERYPLKKGARIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|261414901|ref|YP_003248584.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371357|gb|ACX74102.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302327506|gb|ADL26707.1| putative ribonuclease D [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 386

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 30/204 (14%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I ++ Y  + + + +   +  LE    A+     D+M  + ++   I I+  +      
Sbjct: 1   MIKDEKYILVDSEESLANLLADLELYDMAAVDTEADSMYHYTARLCLIQITIGEHHYIVD 60

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
                    L    +  +                         I H   YD  +L + YG
Sbjct: 61  PLCGLDLAPLFKARAMQTL------------------------IFHGADYDLRLLWQTYG 96

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            S +   D ML + +L  G     +A + +++      E+ K  + +    +     + E
Sbjct: 97  FSPKSIFDTMLAAKIL--GEQHLGLADLVKEYFG---DELKKENQRADWTIRPLSLDMCE 151

Query: 541 HAIENSNVILQLWLLLRPKLIVEK 564
           +AI ++  + +L  +L  KL    
Sbjct: 152 YAIHDTFYLHELCAILAEKLQQAG 175


>gi|295663294|ref|XP_002792200.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb01]
 gi|226279375|gb|EEH34941.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb01]
          Length = 381

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   SP    + T
Sbjct: 127 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 181

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP IG  TA  L++++
Sbjct: 182 FSEQRKEPILEIHLDRVLEDLDMDRKQFVDLCILLG--CDYLDPIPKIGPNTALKLIRDH 239

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E     + +R+L           P      E  +   
Sbjct: 240 GSLEKVVEAIESDPKKKY--VIPEDWPY-KDARELFFDPDVRKADHPDCDFKWEAPDVEG 296

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 297 LVKFLVE 303


>gi|170099778|ref|XP_001881107.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643786|gb|EDR08037.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 555

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 13/190 (6%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   QA G+P +E  G    + +A    +    G A  ++S D D++   +P       
Sbjct: 353 CKEILQAMGVPCVESTGAFEAEALAAAMVL---NGLADYVVSEDTDVLIYEAPMIRNISN 409

Query: 158 VKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
            K+    +   HV     +  E  V    L G   D    I  +G   A   ++EYG +E
Sbjct: 410 QKDPLTIVSGAHVRTTLELTRESFVDFALLLG--TDFSQRIKNVGPARAYRFIKEYGTIE 467

Query: 216 NILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275
            I+   ++   K   +    Y +  + +R++      VP    LE L  +  +   +   
Sbjct: 468 RIIETQTKYPPKISTK---AYLDQVKTARRVFRTLPPVP---QLELLHQDKKDEASINLI 521

Query: 276 LKALEFTKLI 285
            +     + +
Sbjct: 522 FQRYGLGRYL 531


>gi|156398094|ref|XP_001638024.1| predicted protein [Nematostella vectensis]
 gi|317374916|sp|A7RRJ0|FEN1_NEMVE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|156225141|gb|EDO45961.1| predicted protein [Nematostella vectensis]
          Length = 377

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 31/208 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   +  GIP +E    EA+   A            V    + D D +   +     + 
Sbjct: 141 CKQLLKLMGIPYVEAPC-EAEAQCAALVK-----SGKVYATGTEDMDALTFGTTVMLRHL 194

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E      ++  +++V+ + G+  ++ + L  L G   D    I GIG K +  L+++
Sbjct: 195 TFSEAKKMPIKEFHLQNVLSEAGLSQDEFIDLCILLG--CDYCDSIKGIGPKRSVDLIRQ 252

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE-HLILEDCNG 269
           + +++ IL N    K       +  Y E   L +       +  +  P E  L  E+ N 
Sbjct: 253 HRSIDKILENIDTSKHPPPENWL--YKEARELFK-------NPEVRNPEEIELKWEEPNE 303

Query: 270 PRLISF------LKALEFTKLINRVATT 291
             L++F               I ++   
Sbjct: 304 EALVTFMCQEKGFSEDRIRSGIKKLTKA 331


>gi|317010699|gb|ADU84446.1| hypothetical protein HPSA_02145 [Helicobacter pylori SouthAfrica7]
          Length = 268

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 55  GRESFRYQLCDYYKQKRHQFDEDFRS-------LLKALKIALVEKYPLKKGAKIQGEHCF 107

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 108 EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 161

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 162 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 214

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 215 SDSEAKEKALLNMRLVNMH 233


>gi|47212193|emb|CAF90074.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 380

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
           ++     ++++ G+  E+ + L  L G   D    I GIG K A  L++++G +E IL N
Sbjct: 205 QEFHFSRILQEIGLTNEQFIDLCILLG--CDYCGTIKGIGPKRAIDLIKQHGCIEEILEN 262

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
               K     + + + A    L+ ++V              L     +   LI F+
Sbjct: 263 IDSNKHPSPEDWLYKEARGLFLNPEVV--------DCSTVELKWSQPDEDGLIQFM 310


>gi|317012264|gb|ADU82872.1| hypothetical protein HPLT_02190 [Helicobacter pylori Lithuania75]
          Length = 258

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIALVEKYPLKKGAKIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
 gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
          Length = 627

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query: 391 SFKIITDTMDAFHSKPIAIA----ISTLDQKDDTSFKVETIFIDLS------VHTSQDST 440
           +F + T  +D      IA+     + +   + +    +      +          + +  
Sbjct: 445 AFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWEML 504

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
                 +E+L   + F E    + + HN  +D   L + GI      D +L++++L    
Sbjct: 505 KDKPKLEEVLPAFRAFLE--GSVLVAHNGAFDMAFLRKVGIDQPPLVDTLLLAHLLFPDL 562

Query: 501 SSHDIASIAQKW 512
             H +  +A+++
Sbjct: 563 KDHRLERLAERF 574


>gi|254500991|ref|ZP_05113142.1| hypothetical protein SADFL11_1027 [Labrenzia alexandrii DFL-11]
 gi|254505305|ref|ZP_05117453.1| hypothetical protein SADFL11_PLAS3 [Labrenzia alexandrii DFL-11]
 gi|222436149|gb|EEE42831.1| hypothetical protein SADFL11_PLAS3 [Labrenzia alexandrii DFL-11]
 gi|222437062|gb|EEE43741.1| hypothetical protein SADFL11_1027 [Labrenzia alexandrii DFL-11]
          Length = 272

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 77/205 (37%), Gaps = 22/205 (10%)

Query: 9   LVDGSSFIYRA-FYATPLLS--RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
           L+D     YRA   A   +      +GL V+      + L ++ ++  K +        F
Sbjct: 5   LLDADIVAYRASVAAQNDIDWGDGQEGLTVSPEKAVEDAL-RIAEDWMKAAGCKEAICCF 63

Query: 66  DYPAVTFRNEIYPDYKANR-PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
                 FR  + P YKANR  + PE  L  +  +           +     EADDII   
Sbjct: 64  -SGDENFRKTLLPTYKANRTGEKPEAYLAAVNALED-----EYEVLRQPKLEADDIIGIM 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
               ++    VTI   DKDL              K  KI+  +   ++ +        Q 
Sbjct: 118 MGSPKRTFVGVTI---DKDLHSCPGYLFNPTKDKKPRKINTRY-ADEFHLK-------QT 166

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQ 209
           + GD++D   GIPG+G   A  +L 
Sbjct: 167 MCGDTVDGYTGIPGVGPAKAQEILA 191


>gi|158425553|ref|YP_001526845.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158332442|dbj|BAF89927.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 206

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 70/216 (32%), Gaps = 25/216 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                    +     +    T  +     +   + +S  D   D       + I      
Sbjct: 6   HRGDLPDSFQPAPVVAIDTETLGLKPHRDRLCVVQLSNGDGTAD------VVQIPAGA-- 57

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY 494
                     T E    L +   + + +K+ H  ++D  VL H +G++        + S 
Sbjct: 58  ----------TAESAPNLVRMLADPNVVKLFHFGRFDIAVLLHTFGVTTAPVFCTKIASR 107

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLW 553
           +  +    H +  + ++ L     ++ K ++SS     +++D+Q+  +A  +   +    
Sbjct: 108 LTRTYTDRHGLKDLVRELLGV---DLSKQQQSSDWAASELTDAQLA-YAASDVLHLHACK 163

Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             L   L  +    +        +   + +++ G  
Sbjct: 164 EKLEAMLARDGRTALAAEC-FKFLPARAALDLAGWP 198


>gi|145514173|ref|XP_001442997.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124467070|sp|A0CXT3|FEN11_PARTE RecName: Full=Flap endonuclease 1-1; Short=FEN-1-1; AltName:
           Full=Flap structure-specific endonuclease 1-1
 gi|124410358|emb|CAK75600.1| unnamed protein product [Paramecium tetraurelia]
          Length = 390

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 90/289 (31%), Gaps = 60/289 (20%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV-------TFRNEIYPDY 80
              DG     + G  N   + L+N  K         +FD             R ++  + 
Sbjct: 58  TDKDGNRTGHLVGLFNRTLQFLENGIKP------VWVFDGKPPLLKSGELARRKKLKEEA 111

Query: 81  KANRPKIPEMLLPQLPLVRL----------------ATQAFGIPAIEIQGFEADDIIATY 124
           +       E    Q  L++                   +  G P I     EA+   A  
Sbjct: 112 QVKTELALEQGDMQQALLQHQRTTTISSVMKEDAIKMLKLMGCPVIIAPC-EAEAQCAEL 170

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVC 181
                  G      + D D +   +P        K+E I     + ++K+  I  E+ V 
Sbjct: 171 CR----AGKIYATATEDMDALTFRTPVLLRGFNTKKEPIYEIIYDDMMKELEITYEQFVD 226

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN--------- 232
           L  L G   D    I GIG  TA  L++E+ ++E IL +  ++  ++ +           
Sbjct: 227 LCILCG--CDYTEKIEGIGPGTAYKLIKEFKSIEGILEHVQKVNAEREKNKQNPKYTVPT 284

Query: 233 --ILEYAETARLSRKL-VMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
             + +       SR+L +         I    L     +   L  FL  
Sbjct: 285 KFLYQD------SRELFITPLVQKGEEI---QLTWNKPDVENLKKFLVE 324


>gi|302507858|ref|XP_003015890.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
 gi|291179458|gb|EFE35245.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
          Length = 1120

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 88/272 (32%), Gaps = 36/272 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    I++ 
Sbjct: 778  KKDRRDADEVSQIMVTECQQLLRLFGLPYITAP-MEAEAQCAELVALGLVDG----IVTD 832

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D    +   T +Y  +  +   +E      + K++ +  +K+V    L G   D   G
Sbjct: 833  DSDTF--LFGGTRIYKNMFNQSKYVECYLSSDLEKEYTLDRKKLVSFSHLLG--SDYTEG 888

Query: 196  IPGIGYKTAALLLQEYGNLEN---------ILINASRIKQKKRRENILEYAETARL---- 242
            IPGIG  TA  +L E+ +LE          +            R+   +      L    
Sbjct: 889  IPGIGPVTALEILTEFSDLEEFKDWWSQVQLGNKIPDDPHAGFRKKFKKNITKLFLPPGF 948

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              + +     +  +            +   +  F        L+  V  + +     + P
Sbjct: 949  PDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQF--------LMATVGWSPERTDEVLVP 1000

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
            V+ D N  E +G                 F+ 
Sbjct: 1001 VIRDANRREQEGTQSNITGFFQGPQGAGAFAP 1032


>gi|242813984|ref|XP_002486279.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218714618|gb|EED14041.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 399

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   +P    + T
Sbjct: 145 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 199

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++  ++  G+  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 200 FSEQRKEPIQEIHLDKALEGLGMDRKQFIDLCILLG--CDYLEPIPKVGPNTALKLIREH 257

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I +     + +R+L           P      E  +   
Sbjct: 258 GSLEKVVEAIESDPKKKY--VIPDDWPY-KEARELFFNPDVRKADDPQCDFKWESPDVEG 314

Query: 272 LISFL 276
           LI FL
Sbjct: 315 LIQFL 319


>gi|3047083|gb|AAC13596.1| similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana]
          Length = 362

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 48/263 (18%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVT-FRNEIYPDYKANRPKIPEMLLPQLPL----- 97
           M  + ++         +   +FD       R E+   Y + R      L   +       
Sbjct: 101 MFNRTIRLLEAGIKPVY---VFDGKPPELKRQELAKRY-SKRADATADLTGAIEAGNKED 156

Query: 98  ------------------VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIS 139
                              +   +  G+P +E    EA+   A      +  G    + S
Sbjct: 157 IEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATS-EAEAQCAALCKSGKVYG----VAS 211

Query: 140 TDKDLMQLVSPT--TCLYDTVKEE----KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            D D +   +P     L D    +    + ++  ++++  +  ++ + L  L+G   D  
Sbjct: 212 EDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG--CDYC 269

Query: 194 PGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
             I GIG +TA  L++++G++E IL N ++ + +   E    Y E  +L ++      DV
Sbjct: 270 DSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEW--PYNEARKLFKE-----PDV 322

Query: 254 PITIPLEHLILEDCNGPRLISFL 276
                   +     +   ++ FL
Sbjct: 323 ITDEEQLDIKWTSPDEEGIVQFL 345


>gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
 gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
 gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
 gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
          Length = 339

 Score = 65.8 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 71/195 (36%), Gaps = 38/195 (19%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---- 154
           +      GIP ++    E +   A         G      S D D +   +P        
Sbjct: 136 KKLLDYMGIPWVQAPS-EGEAQAAYMAKK----GDTYASASQDFDSLLFGAPNLVRNLAI 190

Query: 155 -----------YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
                      Y  VK E I +E  +K  GI  E++V +  L G   D   GI G+G KT
Sbjct: 191 TGKRKLPRKNVYVDVKPEIILLEENLKNLGISREQLVDIGILVG--TDYNEGIKGVGPKT 248

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           A  L+++YG+LE I               I E   T    +++  +  + P+T     L 
Sbjct: 249 ALKLIKKYGSLEKI---------------IQERGYTIPHYKEIKDIFLNPPVTDSY-KLE 292

Query: 264 LEDCNGPRLISFLKA 278
               +  +LI FL  
Sbjct: 293 WRAFDEEKLIDFLCE 307


>gi|72382995|ref|YP_292350.1| putative ribonuclease D [Prochlorococcus marinus str. NATL2A]
 gi|72002845|gb|AAZ58647.1| 3'-5' exonuclease [Prochlorococcus marinus str. NATL2A]
          Length = 214

 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 28/219 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I +     +    L +  + +       +     +   I I       D    V  I I+
Sbjct: 13  IFDQDIDSETEIALRSSSALAVDTEAMGLIHGRDRLCLIQIC------DEFDNVICIRIE 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
            + H++               +LK   EN+   K+ H  ++D   L     I++      
Sbjct: 67  RNQHSAP--------------HLKSILENKTIEKVFHFARFDVAALASNLNINVNPIFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE--HAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    K+ D   ++  +A  +  
Sbjct: 113 KIASKIGRTYSPRHGLKEVVLETVGV---ELDKQAQSS-DWGKVGDLTQKQLIYASNDVR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            +L     L   L  E+   + ++     + V+S+++  
Sbjct: 169 YLLGAKHKLEEMLKREERWGLAQKC-FQCVPVLSELDRR 206


>gi|326388611|ref|ZP_08210204.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206862|gb|EGD57686.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
          Length = 205

 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 70/221 (31%), Gaps = 25/221 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
             +     +   G  +    T  +     +        +   D    +    F   S + 
Sbjct: 6   HEEDLPADVLAPGIVAVDTETMGLVTTRDRL-----CVVQISDGKGDEHLVRFAPGSTYD 60

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSY 494
           + +              LK    +   LK+ H  ++D   +H Y G+         + S 
Sbjct: 61  APN--------------LKAVLADPERLKLFHFARFDLAAIHYYLGVMATPVFCTKIASK 106

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + ++      KEI K ++SS            E+A  +   +     
Sbjct: 107 LVRTYTDRHGLKELVRELAG---KEISKQQQSSDWGGANLSDAQLEYAASDVRYLHTCHA 163

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +L  +L  E    + +      +   + ++I G   D+D+ 
Sbjct: 164 VLVDRLAREGRAEIAQAC-FDFLPTRALLDIAGWA-DRDIF 202


>gi|210134620|ref|YP_002301059.1| DNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori P12]
 gi|210132588|gb|ACJ07579.1| DNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori P12]
          Length = 278

 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E         +   +   I  +E                
Sbjct: 67  GRESFRYQLCDHYKQKRHQFDEDF-------KALLRTLKIAIVEKYPLKKGAKIQGEHCF 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 120 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 174 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 226

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 227 SDSEAKEKALLNMRLVNMH 245


>gi|326784200|ref|YP_004324593.1| Rnh RNaseH [Prochlorococcus phage Syn1]
 gi|310004932|gb|ADO99323.1| Rnh RNaseH [Prochlorococcus phage Syn1]
          Length = 287

 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 44  MLWKLLQNSRKESIASH--FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101
           M+   L++  ++    +    + +D     +R +++P YK NR K  +        +   
Sbjct: 31  MVLNSLRSYEQKYGEKYGEMVLAYDSK-QYWRKQVFPYYKQNRKKDRQRSGHDWSSIFEV 89

Query: 102 T--------QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTT 152
                    + F    +E+ G EADD+I+T       +   + I+S DKD +QL   P  
Sbjct: 90  LNKIRDEIKEYFPYKVVEVLGAEADDVISTLCKNKGPKEL-ILILSGDKDFIQLHKYPGV 148

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
             Y+ + ++ +  +         P   +    + GD  D IP
Sbjct: 149 YQYNPIAKKNMGFDD--------PHLFIKEHIIKGDKSDGIP 182


>gi|126697114|ref|YP_001092000.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301]
 gi|126544157|gb|ABO18399.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301]
          Length = 211

 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           +LKK  E+E   KI H  ++D   L     I+ +      + S +  +  + H +  +  
Sbjct: 71  HLKKLLEDEKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLIN 130

Query: 511 KWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           + L     E+ KS +SS    ++       ++A  +   +++    L+  L  E    + 
Sbjct: 131 ELLGI---ELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMHKLKVILEREDRYELA 187

Query: 570 ERL 572
           ++ 
Sbjct: 188 QKC 190


>gi|167600409|ref|YP_001671909.1| DNA polymerase part III [Pseudomonas phage LUZ24]
 gi|161168272|emb|CAP45437.1| DNA polymerase part III [Pseudomonas phage LUZ24]
          Length = 93

 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
             A+N  +Q + A + + AM+ + + +    L    +L IHDE  +E   E++    + +
Sbjct: 3   HKALNTLLQAAGAIVMKWAMVLLDERVRRLNLRAWKVLDIHDEGQWECHPEDL----KAL 58

Query: 945 VHSMEKACLPKINL---RVPLKVNIKVSNNWQEEN 976
              ME        L     PL  +     +W E +
Sbjct: 59  REQMEICVRDAGELLGVNCPLASDSIAGRSWYETH 93


>gi|319950372|ref|ZP_08024289.1| ribonuclease D-like protein [Dietzia cinnamea P4]
 gi|319435942|gb|EFV91145.1| ribonuclease D-like protein [Dietzia cinnamea P4]
          Length = 210

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 81/231 (35%), Gaps = 33/231 (14%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           ++ ++  +    D   +   +   G  +    T  +     +   I +S       +  +
Sbjct: 3   DSHTHQILEGDIDAPTFEAYISA-GRIAVDTETSGLSWAADRLNLIQLS-AQSVGGSLVR 60

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS- 482
           +      L                     LK   E+   +KI H   +D   + + G++ 
Sbjct: 61  LSAGAAPL---------------------LKDLLESRDVVKIFHFAPFDLRFITQLGVAQ 99

Query: 483 MRGFEDIMLMSYVLDS--GRSSHDIASIAQKWLSYTRKEILKSRKSSIPID--KISDSQV 538
            +        S +LD       H + ++  + L     EI K    +       +SDSQ+
Sbjct: 100 AQNIRCTKTASKLLDPQLDPKQHSLRALLLRKLGV---EITKGEARTSDWSARSLSDSQI 156

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +A+++   + +L   L  +L    L+ +Y ++    I + + +E +G+ 
Sbjct: 157 -RYALDDVAHLERLHSKLEKELEERSLIELYRQI-CDYIPIDALLETSGVP 205


>gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum]
          Length = 860

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 113/325 (34%), Gaps = 39/325 (12%)

Query: 256 TIPLEHLILE---DCNGPRLISFLK---ALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
           T  LE L  +   + +  R     +    L  +K I R   ++     N          +
Sbjct: 142 TTSLEWLKPKNSTEESNERTTDLFENSLKLLSSKHIVRPQISFSTPPDNSYSPFRPKIKS 201

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
           +   I    +   +   ++ ++        +  +   P    +  L         + SY 
Sbjct: 202 KPNCIQPLPKSLSNNADESIEYLHPYQVELEAFANNVPNWNAM--LSDDFTVKPLDSSYQ 259

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I     ++Q V+ L      +  +   +  +F      I ISTLD         + I  
Sbjct: 260 YIDKLDTLEQTVKSLSVCRYIAVDLEHHSYRSFLGITCLIQISTLD--------TDYIID 311

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
            L++H               LS L + F +   +K+ H    D + L R +G+ +    D
Sbjct: 312 ALALHDH-------------LSILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFD 358

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENS 546
             + + +L        ++ + Q++++        ++K  +   +I    +++ E+A  ++
Sbjct: 359 TGVAARLLQ--HGRFSLSYLLQRYVNINP-----NKKYQLADWRIRPLPNELIEYARTDT 411

Query: 547 NVILQLWLLLRPKLIVEKLLHVYER 571
           + +L +   +  +L    LL V   
Sbjct: 412 HYLLHIASRMCRELQDRNLLSVTFE 436


>gi|317376211|sp|B8MNF2|FEN1_TALSN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 395

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   +P    + T
Sbjct: 141 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++  ++  G+  ++ + L  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEQRKEPIQEIHLDKALEGLGMDRKQFIDLCILLG--CDYLEPIPKVGPNTALKLIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I +     + +R+L           P      E  +   
Sbjct: 254 GSLEKVVEAIESDPKKKY--VIPDDWPY-KEARELFFNPDVRKADDPQCDFKWESPDVEG 310

Query: 272 LISFL 276
           LI FL
Sbjct: 311 LIQFL 315


>gi|148284142|ref|YP_001248232.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
 gi|146739581|emb|CAM79331.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
          Length = 210

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 81/215 (37%), Gaps = 19/215 (8%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
             L   G  +    T  ++    +   +     + KDD     E   +            
Sbjct: 12  DNLMISGDLAIDTETMGLNFARDRLCLLQFC-QESKDDNIDDKEVFLVKFEDQQYNSHN- 69

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGR 500
                      LKK   +    KI H  ++D   +  Y G+++       + S ++ +  
Sbjct: 70  -----------LKKLLMDCSRTKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYT 118

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            SH +  + ++ L     +I K  +SS    +   S  +E+A ++   + ++  +L   L
Sbjct: 119 DSHGLKDLCRELLGI---QISKQCQSSDWGRQSLTSDQEEYAAKDVVYLHRIKNILEEML 175

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           I E  L + +++    +   +++++ G Q D D+L
Sbjct: 176 IREHRLDIAQKI-FKFLPARAELDVIGWQ-DIDIL 208


>gi|332187924|ref|ZP_08389657.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17]
 gi|332012085|gb|EGI54157.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17]
          Length = 206

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 73/216 (33%), Gaps = 25/216 (11%)

Query: 376 DIQQWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH 434
             +     L   G+A +    T  +     +        +   D    +    F   S +
Sbjct: 6   HEEDIPADLFAPGAAIAVDTETMGLITPRDRL-----CVVQLSDGGPDEHLVRFSPDSDY 60

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMS 493
            + +              L+    +   LK+ H  ++D   +  Y G+         + S
Sbjct: 61  AAPN--------------LRALLADPARLKLYHFGRFDIAAIRHYLGVVAAPVYCTKIAS 106

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
            ++ +    H +  + ++ L     E+ K+++SS           +E+A  +   + ++ 
Sbjct: 107 RLIRTYTDRHGLKELVRELLGI---ELSKAQQSSDWGAPELSDAQREYAASDVRYLHRMK 163

Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           + L  +L  E  + + +      +   +++++ G  
Sbjct: 164 VELDKRLEREGRMELAQAC-FDFLPARAELDLAGWP 198


>gi|317180679|dbj|BAJ58465.1| dNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori F32]
          Length = 258

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E         R   +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRRQFDE-------YFRSLLKALKIALVEKYPLKKGARIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPQNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L +      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNKDAKEHELWEQI--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|306844394|ref|ZP_07476984.1| 3'-5' exonuclease [Brucella sp. BO1]
 gi|306275207|gb|EFM56957.1| 3'-5' exonuclease [Brucella sp. BO1]
          Length = 205

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 24/180 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            + + +    T  ++    +   + IS  D   D       I ID     + +       
Sbjct: 17  QVDAVAIDTETLGLNPHRDRLCVVQISPGDGTAD------VIQIDAGQKKAPN------- 63

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L K  ++    KI H  ++D  VL   +G   +      + S +  +    H 
Sbjct: 64  -------LVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHG 116

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  I  + L  +   I K ++SS    ++      E+A  +   + +L  +L  +L  + 
Sbjct: 117 LKEICSELLDVS---ISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDG 173


>gi|16266049|gb|AAL16725.1|AF358674_1 putative DNA polymerase I [Helicobacter hepaticus]
          Length = 77

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
            ++  +  A   R +IY  YK NR   P+ LL QLP+     +  G   I I+G+EADD+
Sbjct: 4   ISIALEVEARIKRRQIYDAYKRNRQPPPQELLMQLPIAIEWIEKMGFLNISIEGYEADDV 63

Query: 121 IATYTYIAEKEGF 133
           IA+   +A  +  
Sbjct: 64  IASINKVANAQNI 76


>gi|194860399|ref|XP_001969574.1| GG10182 [Drosophila erecta]
 gi|190661441|gb|EDV58633.1| GG10182 [Drosophila erecta]
          Length = 1142

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 107/354 (30%), Gaps = 89/354 (25%)

Query: 686  DSLPNHINKRTQRVHTFYSL---ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
              LPN +  +               T+T R         +      LG ++R    +PP 
Sbjct: 739  QQLPNELTGQPIAYGAICPQVVACGTLTRRAMEPTWMTASNSRTDRLGSELRSMVQAPPG 798

Query: 743  KKLISADYSQIELRILAHIAKITPLYQVFE-------------NSLDIHRMVAAEIFGVN 789
             +L+ AD    EL I + +       +                N  D+H + A  +    
Sbjct: 799  YRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSNGSDMHSITAKAV---- 854

Query: 790  IEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HR 838
                    R HAK IN++ IYG        L  Q       SEA     + F        
Sbjct: 855  -----GISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKMFSITKGKRV 909

Query: 839  FPGIHEYIEKTKNFVRQ------------------------NGYVETIFGRR-------- 866
            +    E+ ++  +                             G  E+    R        
Sbjct: 910  YRLREEFHDELDDRAYSSYEASRLAIQRNRTLTEVFHRPNWQGGTESAMFNRLEEIATGS 969

Query: 867  ------------IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
                           +    P+   R +  R  IN  +Q  A D     ++S+   +  H
Sbjct: 970  QPRTPFLGGRLSRALEADGGPEQEQRFLPTR--INWVVQSGAVDFLHLMLVSMRWLMGSH 1027

Query: 915  KLATKMLLQIHDELVFEVPEEE--ITTASQIIVHSMEKA-CLPKINL-RVPLKV 964
                +  L  HDEL + V EE       +  I + M ++ C+ +I L  +P+ V
Sbjct: 1028 ---VRFCLSFHDELRYLVKEEFSPKAALAMHITNLMTRSFCVSRIGLKDLPMSV 1078


>gi|317009070|gb|ADU79650.1| DNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori
           India7]
          Length = 278

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E         +   +   I  +E                
Sbjct: 67  GRESFRYQLCDHYKQKRHQFDEDF-------KALLRTLKIAIVEKYPLKKGAKIQGEHCF 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 120 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 174 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 226

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 227 SDSEAKEKALLNMRLVNMH 245


>gi|150866777|ref|XP_001386488.2| hypothetical protein PICST_33791 [Scheffersomyces stipitis CBS
           6054]
 gi|317376214|sp|A3M056|FEN1_PICST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|149388033|gb|ABN68459.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 381

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 20/192 (10%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             Q    +   +  GIP +     EA+   A         G      S D D +    P 
Sbjct: 136 REQNDEAKKLLELMGIPYVNAPC-EAEAQCAELART----GKVFAAASEDMDTLCYEPPY 190

Query: 152 TCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
              + T  E +      I     I    +   + + +  L G   D    I G+G  TA 
Sbjct: 191 LLRHLTFAEARKMPINQITYSEAIAGLEMTKPQFIDMCILLG--CDYCETIKGVGPVTAY 248

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE-HLIL 264
            L++E+G+LE I+ + +     K    + E       +R+L     D  +T   E  L  
Sbjct: 249 KLIKEHGSLEKIIEHINSNPTSKY--KVPENWPYDE-ARQL---FMDPEVTKGEEVTLKW 302

Query: 265 EDCNGPRLISFL 276
           ++ +   LI ++
Sbjct: 303 KEPDVEGLIQYM 314


>gi|158428774|pdb|2IHN|A Chain A, Co-Crystal Of Bacteriophage T4 Rnase H With A Fork Dna
           Substrate
 gi|295982227|pdb|3H7I|A Chain A, Structure Of The Metal-Free D132n T4 Rnase H
 gi|295982230|pdb|3H8W|A Chain A, Structure Of D132n T4 Rnase H In The Presence Of Divalent
           Ma
          Length = 305

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 42  CNMLWKLLQNSRKESI-------ASHFAVIFD-YPAVTFRNEIYPDYKANRPKIPEM--- 90
            +M+  L+ NS K ++        +   +  D   +  +R +    YK NR K  E    
Sbjct: 40  LSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTW 99

Query: 91  -----LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM 145
                      ++           ++I  +EA+D IA        EG  + IIS+D D  
Sbjct: 100 DWEGYFESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFT 159

Query: 146 QLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           QL   P    +  + ++ + I+    +           + L GD  DN+  + 
Sbjct: 160 QLHKYPNVKQWSPMHKKWVKIKSGSAEIDCMT------KILKGDKKDNVASVK 206


>gi|208434370|ref|YP_002266036.1| DNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori G27]
 gi|208432299|gb|ACI27170.1| DNA-polymerase I-like 5'-3' exonuclease [Helicobacter pylori G27]
          Length = 278

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 67  GRESFRYQLCDHYKQKRHQFDEGFRS-------LLKALKIALVEKYPLKKGARIQGEHCF 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 120 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 174 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 226

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 227 SDSEAKEKALLNMRLVNMH 245


>gi|90420956|ref|ZP_01228860.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
 gi|90334734|gb|EAS48510.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
          Length = 205

 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 70/201 (34%), Gaps = 25/201 (12%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G  +    T  +D    +   + +S  D   D                 Q + G++    
Sbjct: 18  GPVAIDTETLGLDTRRDRLCVVQLSPGDGTADV---------------VQIAKGQSEAPN 62

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                +    ++    KI H  ++D   L H +G+   G     + S +  +    H + 
Sbjct: 63  -----ITALLKDPAKTKIFHYARFDVAALYHAFGVMTDGIFCTKIASRLTRTYTDRHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +A++ +     +I K ++SS    +       E+A  +   +  +   L  +L  E  +
Sbjct: 118 DLAREMVGV---DISKQQQSSDWAAETLSQAQVEYAASDVLYLHDIMGGLYKRLEREDRM 174

Query: 567 HVYERLDKPMIDVVSQMEITG 587
            + +      +   +++++ G
Sbjct: 175 ELAKAC-FTFLPTRAKLDLAG 194


>gi|119385336|ref|YP_916392.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
 gi|119375103|gb|ABL70696.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
          Length = 204

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 24/194 (12%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 L+     +    T  +D    +   + +S+ D                + H  Q
Sbjct: 8   NDLPDDLDLGPVVAIDTETMGLDPRRDRLCLVQLSSGDG---------------NAHLVQ 52

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVL 496
            + G+          L +   +   LK+ H  ++D   L   +G+  +      + S ++
Sbjct: 53  IAKGQREAPN-----LARMLADPKVLKLFHFGRFDIAALEAAFGVVTKPVWCTKIASKMV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H +  +  + +     +I K +++S            E+A  +   +  L   L
Sbjct: 108 RTYTDRHGLKYLLSELVGV---DISKQQQTSDWGAAELSEAQLEYAASDVLYLHALKAEL 164

Query: 557 RPKLIVEKLLHVYE 570
             +L  E  L + +
Sbjct: 165 EKRLAREGRLGLAQ 178


>gi|56756631|gb|AAW26488.1| SJCHGC07325 protein [Schistosoma japonicum]
          Length = 188

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 10/116 (8%)

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
           ++ ++  V++   +  ++ V L  L G   D +  I GIG K A  LL +Y +++ +L N
Sbjct: 4   QEFNLASVLEGLSLTMDQFVDLCILLG--CDYVDTIRGIGPKKALDLLHKYHSIDCVLKN 61

Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
             + K     +   E A+   L+ ++            L  L  ++ +   L+ FL
Sbjct: 62  IDKSKYPVPNDWPYEDAKKLFLNPEVT--------DPSLIELKWDEPDEEGLVEFL 109


>gi|325995712|gb|ADZ51117.1| hypothetical protein hp2018_0432 [Helicobacter pylori 2018]
 gi|325997308|gb|ADZ49516.1| hypothetical protein hp2017_0430 [Helicobacter pylori 2017]
          Length = 285

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 74  GRESFRYQLCDHYKQKRHQFDEGFRS-------LLKALKIALVEKYPLKKGAKIQGEHCF 126

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 127 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 180

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 181 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 233

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 234 SDSEAKEKALLNMRLVNMH 252


>gi|15645636|ref|NP_207812.1| hypothetical protein HP1022 [Helicobacter pylori 26695]
 gi|2314170|gb|AAD08070.1| predicted coding region HP1022 [Helicobacter pylori 26695]
          Length = 278

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E         +   +   I  +E                
Sbjct: 67  GRESFRYQLCDHYKQKRHQFDEDF-------KALLRTLKIAIVEKYPLKKGAKIQGEHCF 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 120 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 174 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 226

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 227 SDSEAKEKALLNMRLVNMH 245


>gi|296446798|ref|ZP_06888736.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
 gi|296255673|gb|EFH02762.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
          Length = 204

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 74/216 (34%), Gaps = 27/216 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                    +     +    T  ++    +   + +S  +   D                
Sbjct: 6   HQGDLPDGADLGPVVAIDTETLGLNPHRDRLCLVQLSGGNGDAD---------------L 50

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
            + + G+          L+    N + LK+ H  ++D  V+ + +G+         + S 
Sbjct: 51  VRIAPGQTRAPN-----LEALLANPNVLKLFHFGRFDIAVMAKTFGVMAEPVYCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLW 553
           ++ +    H +  + ++ L     EI K ++SS    D +SD+Q+  +A  +   +  L 
Sbjct: 106 LIRTYTDRHGLKDLVRELLGV---EISKQQQSSDWGADTLSDAQLS-YAASDVLYLHALR 161

Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             L   L  E    +        + + +++++ G  
Sbjct: 162 EKLDVMLAREHRTDLAAAC-FAFLPMRARLDLAGWP 196


>gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
 gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
          Length = 203

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 71/217 (32%), Gaps = 25/217 (11%)

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
           T       + L    S +    T  +     +   + +S  D                + 
Sbjct: 4   TLHRGDLPEGLSFGESVAVDTETMGLHPERDQLCVVQLSAGDG---------------NA 48

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLM 492
           H  Q   G     +     L+    +   LKI H  ++D  +L RY G+         + 
Sbjct: 49  HIVQLDRGTYNAPR-----LRALMADPAILKIFHFARFDVAMLQRYLGVVTAPVYCTKIA 103

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           S ++ +    H +  +A++ ++    ++ K ++SS             +A  +   + ++
Sbjct: 104 SKLVRTYTDRHGLKDLARELVNI---DMSKQQQSSDWGAASLTDAQLSYAASDVLHLHEI 160

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +L   L  E    +        + V + +++ G  
Sbjct: 161 KSVLDGMLAREGRTELARAC-FAFLPVRAALDLAGWP 196


>gi|52549222|gb|AAU83071.1| DNA repair protein [uncultured archaeon GZfos26E7]
          Length = 339

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 33/176 (18%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
            R + +   +A     PEM+       +    + GIP +E     A +  A    +A + 
Sbjct: 113 GREDAFKYAQATSRLQPEMVADA----KSLLTSMGIPVVEA----ASEGEAQAARMA-RS 163

Query: 132 GFAVTIISTDKDLMQLVSPTTCL---------------YDTVKEEKIDIEHVIKKWGIPP 176
           G    + S D D +   +P                   Y  VK E I+++  + + GI  
Sbjct: 164 GDVRFVGSQDYDSLLFGAPEVVRNLAVGGKRKLPGKNVYVDVKLEIIELQPNLDRLGITQ 223

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-------INASRIK 225
           E+++ +  L G   D  PGI GIG K A  L+ ++G++E+ L        +   IK
Sbjct: 224 EQLIDIAILVG--TDYDPGIHGIGAKKALQLIYKHGSIEDALPILGESIEHLDEIK 277


>gi|254779117|ref|YP_003057222.1| hypothetical protein HELPY_0431 [Helicobacter pylori B38]
 gi|254001028|emb|CAX28972.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 278

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E         +   +   I  +E                
Sbjct: 67  GRESFRYQLCDHYKQKRHQFDEDF-------KALLRTLKIAIVEKYPLKKGAKIQGEHCF 119

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 120 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 173

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 174 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 226

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 227 SDSEAKERALLNMRLVNMH 245


>gi|212544870|ref|XP_002152589.1| Flap endonuclease Rad27, putative [Penicillium marneffei ATCC
           18224]
 gi|210065558|gb|EEA19652.1| Flap endonuclease Rad27, putative [Penicillium marneffei ATCC
           18224]
          Length = 411

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   +P    + T
Sbjct: 157 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 211

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++  ++  G+   + + L  L G   D +  IP +G  TA  L++E+
Sbjct: 212 FSEQRKEPILEIHLDKALEGLGMDMAQFIDLCILLG--CDYLEPIPKVGPNTALKLIREH 269

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I +       +R+L           P      E  +   
Sbjct: 270 GSLEKVVEAIENDPKKKY--VIPDDWPYQE-ARELFFNPDVRKADDPQCDFKWESPDVEG 326

Query: 272 LISFL 276
           L+ FL
Sbjct: 327 LVKFL 331


>gi|294013112|ref|YP_003546572.1| ribonuclease D [Sphingobium japonicum UT26S]
 gi|292676442|dbj|BAI97960.1| ribonuclease D [Sphingobium japonicum UT26S]
          Length = 205

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 68/205 (33%), Gaps = 24/205 (11%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
             G  +    T  +     +        +   D    +    F   S + + +       
Sbjct: 16  APGPIAVDTETMGLITPRDRL-----CVVQISDGQGDEHLVRFNPGSDYAAPN------- 63

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHD 504
                  L+    +   LK+ H  ++D   +  Y G+         + S ++ +    H 
Sbjct: 64  -------LRAALADPARLKLYHFGRFDIAAIRHYLGVVAAPVYCTKIASRLVRTYTDRHG 116

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  + ++ L    +E+ K ++SS     +     +E+A  +   +  L   L  +L  E 
Sbjct: 117 LKELVRELLG---QELSKVQQSSDWGGPVLSDAQKEYAASDVRYLHALKAELDKRLAREG 173

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQ 589
            + + +      +   +++++ G  
Sbjct: 174 RMELAQAC-FDFLPHRAELDLAGWP 197


>gi|254526817|ref|ZP_05138869.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202]
 gi|221538241|gb|EEE40694.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202]
          Length = 211

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 56/136 (41%), Gaps = 6/136 (4%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           +LK   E++   KI H  ++D   L     I+ +      + S +  +  + H +  +  
Sbjct: 71  HLKALLEDDKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLIN 130

Query: 511 KWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           + L     E+ KS +SS    ++    +  ++A  +   +++    L+  L  E    + 
Sbjct: 131 ELLGI---ELDKSSQSSDWGSNEDLTKEQLDYAANDVRYLIEAMHKLKVILKRENRYELA 187

Query: 570 ERLDKPMIDVVSQMEI 585
           ++     + V + ++I
Sbjct: 188 QKC-FETVPVHADLDI 202


>gi|317374903|sp|D3TQJ5|FEN1_GLOMM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|289742451|gb|ADD19973.1| 5'-3' exonuclease [Glossina morsitans morsitans]
          Length = 382

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 89/301 (29%), Gaps = 57/301 (18%)

Query: 10  VDGSSFIYR---AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66
           +D S  +Y+   A  A        DG   + + G   M ++ ++         +   +FD
Sbjct: 33  IDASMCLYQFLIAVRAEGAQLTNVDGETTSHLMG---MFYRTIRLLENGIKPVY---VFD 86

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPL-----------------------VRLATQ 103
                 ++         R    + L                              +   +
Sbjct: 87  GKPPISKSGELAKRAERREDAQKALEKATEAGNEADMDKFNRRLVKVTKEHANEAKELLK 146

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--- 160
             G+P +E    EA+   A         G      + D D +   S     + T  E   
Sbjct: 147 LMGVPYVEAPC-EAEAQCAALVK----AGKVYATATEDMDALTFGSGILLRHLTFSEARK 201

Query: 161 ---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
              ++     V+  +G+  ++ + L  L G   D   GI GIG K A  L+  Y ++E I
Sbjct: 202 MPVKEFSYAKVLDGFGLTSQEFIDLCILLG--CDYCDGIRGIGPKRATELMNSYKDIETI 259

Query: 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISF 275
           L    R K     +           + ++       P         L   D +   L+ F
Sbjct: 260 LEKIDRKKYTVPEDW----------NYQIARELFVNPEVADPSSLELKWFDPDEDGLVRF 309

Query: 276 L 276
            
Sbjct: 310 F 310


>gi|330993409|ref|ZP_08317344.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
 gi|329759439|gb|EGG75948.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
          Length = 215

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 72/207 (34%), Gaps = 24/207 (11%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G  +    T  ++    +   + +S  D         +   + +  H +           
Sbjct: 25  GMVAVDTETMGLNPHRDRLCLVQLSAGDG--------QAHLVQVPPHATAAGFPN----- 71

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                L +   +    KI H  ++D  +L   + +++       + S ++ +    H +A
Sbjct: 72  -----LVRVLTDARVPKIMHFARFDVAILQHTFNVTVAPCICTKVASKLVRTYTDRHGLA 126

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           ++ ++ L     E+ K ++SS         +   +A  +   +  LW  L   L  E   
Sbjct: 127 NLCRELLGV---ELSKQQQSSDWGATDLTREQLCYAASDVLYLHALWERLEALLHREGRR 183

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQD 593
            V +      +   ++++I G Q D D
Sbjct: 184 DVAQAC-FDFMPARARLDILGYQ-DPD 208


>gi|332673272|gb|AEE70089.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 243

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E  +          +A  I  +E                
Sbjct: 32  GRESFRYQLCDHYKQKRHQFNEDFIS-------LLKALKIALVEKYPLKKGARIQGEHCF 84

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 85  EYEADDIISYYKK---KDPQNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 138

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L +      +      I+  K +E++
Sbjct: 139 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNKDSKEHELWEQI--IQAFKIKEDL 191

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 192 SDSEAKEKALLNMRLVNMH 210


>gi|145616314|ref|XP_360876.2| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145010042|gb|EDJ94698.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 390

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 21/187 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            R   +  GIP I     EA+   A         G      S D D +   SP    + T
Sbjct: 137 CRQLLKLMGIPYIIAP-TEAEAQCAVLAR----AGKVFAAASEDMDTLCFDSPILLRHLT 191

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++I ++ V++   +  ++ V L  L G   D +  IP +G  TA  L++E+
Sbjct: 192 FSEARKEPIQEIHVDKVLEGLDMDRKQFVDLCILLG--CDYLDPIPKVGPSTALKLIREH 249

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           G+LE I     ++K+ + +  + E    E A   R L       P   P  +   E  + 
Sbjct: 250 GSLETI---VEKMKKGELKYTVPEDWPFEDA---RDLFFNPAVHPADHPDCNFKWEKPDV 303

Query: 270 PRLISFL 276
             L+ +L
Sbjct: 304 EGLVKYL 310


>gi|154339662|ref|XP_001565788.1| flap endonuclease-1 (FEN-1) [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|317374905|sp|A4HFE4|FEN1_LEIBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|134063106|emb|CAM45304.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 395

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ----- 146
             Q+   +   Q  G+P I+    EA+   A      +       + + D D +      
Sbjct: 139 REQIEESKKLLQLMGVPVIQAPS-EAEAQCAELVKKGKAW----AVGTEDMDALTFGSTV 193

Query: 147 -LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
            L              +I ++ V++  G+  ++ V L  L G   D +P +PGIG + A 
Sbjct: 194 MLRHLNISDAKKRPIAEIHLDEVLQATGLSMDQFVDLCILLG--CDYVPKVPGIGPQRAW 251

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
             +Q YGN+E+ L +    K     +     A    L+ ++               +   
Sbjct: 252 EGIQRYGNIESFLESLDAAKHMVPPDFCYREARAFFLNPEVTRA--------EEIDIRFS 303

Query: 266 DCNGPRLISFL 276
           + +   LI FL
Sbjct: 304 EPDEAGLIQFL 314


>gi|217033279|ref|ZP_03438710.1| hypothetical protein HP9810_9g32 [Helicobacter pylori 98-10]
 gi|216944220|gb|EEC23645.1| hypothetical protein HP9810_9g32 [Helicobacter pylori 98-10]
          Length = 227

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 16  GRESFRYQLCDHYKQKRHQFDEDFRS-------LLKALKIALVEKYPLKKGARIQGEHCF 68

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 69  EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 122

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 123 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 175

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 176 SDSEAKEKALLNMRLVNMH 194


>gi|311993245|ref|YP_004010111.1| RNaseH ribonuclease [Enterobacteria phage CC31]
 gi|284178083|gb|ADB81749.1| RNaseH ribonuclease [Enterobacteria phage CC31]
          Length = 307

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 23/171 (13%)

Query: 44  MLWKLLQ--------NSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM----- 90
           ML  L+           RK+          +  +  +R +    YK NR    E      
Sbjct: 45  MLRHLVLSTLKFNAFKFRKDGYNKVIICCDNAKSGYWRRDKAYYYKKNRADGREESEWDW 104

Query: 91  ---LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
                    ++    +      + I   EADD IA  T     EG  V I+S+D D  QL
Sbjct: 105 EGYFEGIRTVIEEFEKYMPYHMMNIDKMEADDHIAVLTKKLSLEGNKVLIVSSDGDFTQL 164

Query: 148 VS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
              P    +  ++++      V  K G  P     ++ + GD  DN+  I 
Sbjct: 165 HKYPNVTQWSPMQKK-----FVKAKTG-SPALDCMMKVVKGDKKDNVAAIT 209


>gi|332238690|ref|XP_003268536.1| PREDICTED: DNA polymerase subunit gamma-1 [Nomascus leucogenys]
          Length = 1231

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 111/386 (28%), Gaps = 118/386 (30%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 785  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 844

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 845  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 904

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 905  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKVFNYGRIYGAGQPFA 954

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 955  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELHLPVDRTEGGWISL 1014

Query: 846  --IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE------------------- 884
              + K +    +         ++       + K    +                      
Sbjct: 1015 QDLRKVQREAARK-----SQWKKWEVAAERAWKGGTESEMFNKLESIATSDIPRTPVLGC 1069

Query: 885  ---RAAINAPIQG-------------SAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
               RA   + +QG             SA D     ++++    E+  +  +  + IHDE+
Sbjct: 1070 CISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEV 1129

Query: 929  VFEVPEEEITTAS------QIIVHSM 948
             + V EE+   A+       ++   M
Sbjct: 1130 RYLVREEDRYRAALALQITNLLTRCM 1155


>gi|308379117|ref|ZP_07485106.2| hypothetical protein TMJG_00350 [Mycobacterium tuberculosis
           SUMu010]
 gi|308358151|gb|EFP47002.1| hypothetical protein TMJG_00350 [Mycobacterium tuberculosis
           SUMu010]
          Length = 120

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNML 45
            + L L+DG+S  +R+F+  P      DG PVNA+ GF + +
Sbjct: 77  RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSM 118


>gi|170111659|ref|XP_001887033.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|317374862|sp|B0DSN9|FEN11_LACBS RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
           Full=Flap structure-specific endonuclease 1-A
 gi|164638076|gb|EDR02356.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 394

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 22/199 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            R   +  GIP +     EA+   A         G  V    S D D +   +P    + 
Sbjct: 142 CRRLLRLMGIPVVIAPS-EAEAQCAELAR-----GGKVYAAGSEDMDTLTFNAPILFRHL 195

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E       +I+++  ++   +   + + L  L G   D +  I G+G K+A  L++E
Sbjct: 196 TFSEAKKQPISEINLKEALEGLDMNMSQFIDLCILLG--CDYLEPIKGVGPKSALKLIRE 253

Query: 211 YGNLENILINASRIKQKKRRENILEY-AETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           YG L+ ++ +       +  +   E+  E A+     +  + DV +      L   + + 
Sbjct: 254 YGGLKGVVKHLRENSGCRGMQIPDEWPWEEAKK----IFEKPDV-LPADEVELEWTNPDV 308

Query: 270 PRLISFL-KALEFTKLINR 287
             L+ FL K   F +   R
Sbjct: 309 DGLVQFLVKEKGFNEDRVR 327


>gi|167041251|gb|ABZ06007.1| putative 3'-5' exonuclease [uncultured marine microorganism
           HF4000_005D21]
 gi|167045755|gb|ABZ10401.1| putative 3'-5' exonuclease [uncultured marine bacterium
           HF4000_APKG3108]
          Length = 214

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 70/192 (36%), Gaps = 23/192 (11%)

Query: 381 VQKLETIGSASFKIITDTM-DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS 439
           +++LE   S +       +      K   +  S  +            +   +       
Sbjct: 20  LKELEKHSSLAIDTEGSGLQIPHRDKLSLVQFSAGNNDAYIVQPNRKSYKAPN------- 72

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDS 498
                        + K  EN    KIGH ++YD   L +    +++   D  + S +  +
Sbjct: 73  -------------IVKILENAKITKIGHYLRYDVSGLEYFLKCNVKNIFDTKIASKLCRT 119

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
              +H +  +A ++ S    + L S   +  + +++D+Q+ ++   +   + ++   L  
Sbjct: 120 YSQNHGLKDLALEFCSKKLDKRLGSSDWNKNLYELTDAQL-QYCSNDVIYLHKIKDALYK 178

Query: 559 KLIVEKLLHVYE 570
            L+ E  L +YE
Sbjct: 179 MLVRENRLELYE 190


>gi|297463314|ref|XP_002702642.1| PREDICTED: polymerase (DNA directed), gamma [Bos taurus]
 gi|297487953|ref|XP_002696610.1| PREDICTED: polymerase (DNA directed), gamma [Bos taurus]
 gi|296475559|gb|DAA17674.1| polymerase (DNA directed), gamma [Bos taurus]
          Length = 1223

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 60/171 (35%), Gaps = 29/171 (16%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
            R   +      A T+T R         +      +G +++    +PP   L+ AD    
Sbjct: 819 GRYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQ 878

Query: 754 ELRIL-----AHIAKITPLYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           EL I      AH A +      F             D+H   AA +            R 
Sbjct: 879 ELWIAAVLGDAHFAGMHGCT-AFGWMTLQGRKSRGTDLHSKTAATV---------GISRE 928

Query: 800 HAKTINFSIIYGIS-PFR----LATQLRIPRSEAADYIKRYFHRFPGIHEY 845
           HAK IN+  IYG   PF     +    R+ R EAA+  ++ +    G+  Y
Sbjct: 929 HAKIINYGRIYGAGQPFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRY 979


>gi|308063286|gb|ADO05173.1| hypothetical protein HPSAT_02130 [Helicobacter pylori Sat464]
          Length = 258

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRHQFDEGFRS-------LLKALKIALVEKYPLKKGARIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSRKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|126660170|ref|ZP_01731288.1| 3'-5' exonuclease [Cyanothece sp. CCY0110]
 gi|126618535|gb|EAZ89286.1| 3'-5' exonuclease [Cyanothece sp. CCY0110]
          Length = 214

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 81/217 (37%), Gaps = 26/217 (11%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +SQ    N+++  + +     + + +     + +    T  +     +   + +      
Sbjct: 1   MSQSSEKNNNFQ-VCDRDLTSETLDRYLQTDAIAIDTETMGLIPQRDRLCLVQLC----- 54

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVL 476
            D+S  V  I I+     + +              LKK  EN+  +KI H  ++D     
Sbjct: 55  -DSSGYVTAIRIEKEQKEAPN--------------LKKLLENQSIVKIFHYARFDVAQFK 99

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           + +GI         + S +  +   SH + ++ Q+       E+ KS +SS   +  + S
Sbjct: 100 YNFGIDTAPIFCTKVASKLARTYTGSHGLKALVQEIEGV---ELDKSSQSSDWGNSQNLS 156

Query: 537 QVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
           + Q  +A  +   ++ L   L   L  E+   + ++ 
Sbjct: 157 EAQLSYAANDVRYLIPLREQLITMLQREERWEIAQKC 193


>gi|308814608|ref|YP_003934882.1| RNaseH ribonuclease [Shigella phage SP18]
 gi|308206200|gb|ADO19599.1| RNaseH ribonuclease [Shigella phage SP18]
          Length = 314

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 19/172 (11%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP---- 96
             N + K +   +K         + +     +R      YK NR K  E           
Sbjct: 52  VLNSIRKNIVQFKKLGYTIPIICVDNSKNGYWRRTKSYYYKKNRAKAREESQFDWEGLHA 111

Query: 97  ----LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPT 151
               ++    +      + +   EADD IA  T +    G  V I+S+D D  QL   P 
Sbjct: 112 AMHIIIDEMEKHMPYIVMNMDKVEADDHIAVLTKLLTGLGHPVMIVSSDGDFTQLHKFPG 171

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVC--LQALTGDSIDNIPGIPGIGY 201
              +  ++++     +V  K G   + ++    + + GD  DN+  I   G 
Sbjct: 172 VKQWSPMQKK-----YVKTKSG---DALMDCVTKVVKGDKKDNVSSIKVRGD 215


>gi|71031676|ref|XP_765480.1| flap endonuclease 1 [Theileria parva strain Muguga]
 gi|122052062|sp|Q4N3S6|FEN1_THEPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|68352436|gb|EAN33197.1| flap endonuclease 1, putative [Theileria parva]
          Length = 494

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 101/347 (29%), Gaps = 61/347 (17%)

Query: 10  VDGSSFIYR--------AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
           +D S+ +Y+        ++++         G   + I G  N   K L+   K       
Sbjct: 33  IDASAALYQFTIAIRDSSYFS---SLVNSKGESTSHIYGLMNRCSKFLEYGIKP------ 83

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLL-----------------------PQLPLV 98
             +FD      + +     +  R +    L                              
Sbjct: 84  VFVFDSKPPELKTKTLEKRRQQREEANASLKKAISEGDKESVKKLVGRTVKVSKEMNESA 143

Query: 99  RLATQAFGIPAIEI----QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           +   +  G+P IE     +   A  +          E     +          +      
Sbjct: 144 KKLLRLMGVPVIEALEEAEAQCAYLVTKNLCRFVASEDTDTLVFGG-----AFLLRNVAS 198

Query: 155 YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + K  K+D++ V+       ++ +    L G   D    + G+G KTA  L+++Y NL
Sbjct: 199 SSSKKILKVDLQKVLDGLEFNFDQFIDFCILCG--CDYCDTLEGVGPKTAYSLVKKYQNL 256

Query: 215 ENI-------LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           E I         +    K+      + EY E    S KL  +  +      ++       
Sbjct: 257 EEIVNFKGGDYDDFKEAKEYFLSPKVNEYDEN---SVKLGTIDPEGLTEFLVQENNFSKE 313

Query: 268 NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGI 314
              + I  L   +  K+   + +       N +    +    E K +
Sbjct: 314 RVEKFIEKLLKFKTKKIQTSLLSFLTAPQHNNKAKSSNKRPREPKAL 360


>gi|310800740|gb|EFQ35633.1| XPG domain-containing protein [Glomerella graminicola M1.001]
          Length = 394

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 22/188 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   +P    + T
Sbjct: 141 CQKLLKLMGIPYIVAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLTFDTPILLRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      +++ I+ V+   G+  ++ V    L G   D +  IP IG  TA  L++E+
Sbjct: 196 FSEARKEPIQEVHIDKVLAGLGMERKQFVDFCILLG--CDYLDPIPKIGPSTALKLIREH 253

Query: 212 GNLENILINASRIKQKKR---RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
           G+LE ++       ++K     +   + A    L+  +       P   PL     E  +
Sbjct: 254 GDLETLVEAFKNDPKQKYVVPDDWPYQDARELFLNPDV------RPADDPLCDFKWEKPD 307

Query: 269 GPRLISFL 276
              L+ +L
Sbjct: 308 MDGLVQYL 315


>gi|325120690|emb|CBZ56245.1| putative flap endonuclease-1 [Neospora caninum Liverpool]
          Length = 545

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 127/426 (29%), Gaps = 73/426 (17%)

Query: 11  DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV 70
           DG+SF                G   + IAG   ML + ++   +     +   +FD    
Sbjct: 48  DGNSF---------GNFTNDAGDCTSHIAG---MLNRAIRLLEQGIRPVY---VFDGKPP 92

Query: 71  T-------FRNEIYPDY-----KANRPKIPEMLLPQ-----------LPLVRLATQAFGI 107
                    R E+         KA      E L  Q              ++   +  G+
Sbjct: 93  ELKSGELAKRREVRESAQVAAEKAREEGNAEELRKQIVRSVRVSQQHNDDIKRLLRLMGL 152

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE------ 161
           P +E    EA+   A  T    K+ +A    + D D +   +       T  E       
Sbjct: 153 PVVEAPC-EAEAQCAELTK--HKKVWAT--ATEDADALTFGATRLIRNLTFSERTGSSAS 207

Query: 162 -----KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
                 ID+  ++++     E+ +    L G   D    + G+G KTA  L++E+G++E 
Sbjct: 208 ASAILVIDLPTLLEELKFSQEQFIDFCILCG--CDYCGTLKGVGAKTAYGLIREHGSVEK 265

Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF- 275
           IL        +K  E        A      V     +        L   + +   L +F 
Sbjct: 266 ILEVVD---PQKIPEAFCFQEARAFFRNPDVTPADQI-------QLTWGEVDVEGLKTFL 315

Query: 276 -----LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ 330
                         I R+       A            T++  +  + + ++   ++  +
Sbjct: 316 VKENQFNEQRVENYIARLKKARGKTAQTRLESFFGAAVTKSSSLMHKQQAEKQKELEKKK 375

Query: 331 FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
             S+    +   ++   +       +          +  ++   +   +  +K  T    
Sbjct: 376 SRSVRG-FAAPKAKAAVRTPGEAAKRDKPHAGDEERAKKRVKRDETESEGAKKAATEAEK 434

Query: 391 SFKIIT 396
             +  T
Sbjct: 435 ESETET 440


>gi|50302949|ref|XP_451412.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640543|emb|CAH03000.1| KLLA0A09427p [Kluyveromyces lactis]
          Length = 1011

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 29/225 (12%)

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           +E++   K ++    E+ +  +  ++     FGIP I     EA+   AT   +   +G 
Sbjct: 730 DELFEQQKKDKRDADEVTIEMIHEIQSLLSRFGIPYITAP-MEAEAQCATLLQLKLVDG- 787

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190
              +I+ D D+              ++   E   ++   +K G+  +K++ L  L G   
Sbjct: 788 ---VITDDSDVFLFGGTHVYKNMFQEKNYVEYYSLDLFDQKLGLDRDKLIQLAQLLG--S 842

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL-EYAETARLSRKLVML 249
           D  PG+ GIG      +L E+G+L+      +    +  ++ +  E A   +L ++LV  
Sbjct: 843 DYTPGLRGIGPVMGVEILAEFGSLKEFAKWYNE--GQFDKQKLEGETAFQKQLRKRLVSN 900

Query: 250 RTDVPITIPLE----------------HLILEDCNGPRLISFLKA 278
              +    P E                  +    +  +L SFL+ 
Sbjct: 901 EIILDDNFPSEAVYDAYIHPTVDADKTKFVWGSPDLDKLRSFLQQ 945


>gi|198473302|ref|XP_001356241.2| GA21456 [Drosophila pseudoobscura pseudoobscura]
 gi|198139395|gb|EAL33303.2| GA21456 [Drosophila pseudoobscura pseudoobscura]
          Length = 1153

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 90/311 (28%), Gaps = 82/311 (26%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +        T+T R         +      LG ++R    +PP  +L+ AD    EL I 
Sbjct: 763  ICPQVVACGTLTRRAMEPTWMTASNSRPNRLGSELRSMVQAPPGYRLVGADVDSQELWIA 822

Query: 759  AHIAKITPLYQVF-------------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + +       Q                N  D+H + A  +            R HAK IN
Sbjct: 823  SVLGDAYACGQHGATPLGWMTLSGSKANGSDMHSITAKAV---------GISRDHAKVIN 873

Query: 806  FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HRFPGIHEYIEKTKNFVR 854
            ++ IYG        L  Q       SEA     + F        +    E+ ++ ++   
Sbjct: 874  YARIYGAGQQFAETLLRQFNPTFSASEAKAKAMKMFAITKGKRVYRLREEFHDELEDRAY 933

Query: 855  Q------------------------NGYVETIFGRR--------------------IHYD 870
                                      G  E+    R                       +
Sbjct: 934  SGYEASRLALQRNRTLGEVFHRPNWQGGTESAMFNRLEEIATGAQPKTPFLGGRLSRALE 993

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                P+   R +  R  IN  +Q  A D     ++S+   +       +  L  HDEL +
Sbjct: 994  SDGGPEQEQRFLPTR--INWVVQSGAVDFLHLMLVSMRWLM---GPHVRFCLSFHDELRY 1048

Query: 931  EVPEEEITTAS 941
             V E+    A+
Sbjct: 1049 LVQEDMAAKAA 1059


>gi|317374921|sp|B6QT52|FEN1_PENMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 395

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   +P    + T
Sbjct: 141 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++  ++  G+   + + L  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEQRKEPILEIHLDKALEGLGMDMAQFIDLCILLG--CDYLEPIPKVGPNTALKLIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I +       +R+L           P      E  +   
Sbjct: 254 GSLEKVVEAIENDPKKKY--VIPDDWPYQE-ARELFFNPDVRKADDPQCDFKWESPDVEG 310

Query: 272 LISFL 276
           L+ FL
Sbjct: 311 LVKFL 315


>gi|257059023|ref|YP_003136911.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
 gi|256589189|gb|ACV00076.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
          Length = 210

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 26/211 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +     Q + +     + +    T  +     +   + +       D S  V  I I+
Sbjct: 9   VCDRDLSDQTLSRYLAATAIAVDTETMGLIPQRDRLCLVQLC------DPSGFVTAIRIE 62

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
                +                LK+  E +  LK+ H  ++D   L   +GI  +     
Sbjct: 63  RGQKEAP--------------KLKQLMEAKTILKVFHYARFDVAQLRYHFGIETQPIFCT 108

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +  SSH + S+ Q+       E+ K+ +SS   +  + S  Q  +A  +   
Sbjct: 109 KIASKLARTYTSSHGLKSLVQELEGI---ELDKTSQSSDWGNSANLSVAQLSYAANDVRY 165

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           ++     L   L  E+   + E+     I V
Sbjct: 166 LIPAKEKLITMLQREERWQLAEQC-FNCIPV 195


>gi|240273940|gb|EER37459.1| DNA repair protein RAD2 [Ajellomyces capsulatus H143]
          Length = 519

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 22/190 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   SP    + T
Sbjct: 265 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 319

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP +G  TA  L++++
Sbjct: 320 FSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 377

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI---TIPLEHLILEDCN 268
           G+LE ++       +KK    I E     + +R+L     D  +     P      E  +
Sbjct: 378 GSLEQVVEAIKSDPKKKYT--IPEDWPY-KEAREL---FFDPDVRNADHPDCDFKWEAPD 431

Query: 269 GPRLISFLKA 278
              L+ FL  
Sbjct: 432 VEGLVKFLVE 441


>gi|154280855|ref|XP_001541240.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
 gi|150411419|gb|EDN06807.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
          Length = 1111

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 95/275 (34%), Gaps = 36/275 (13%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FG+P I     EA+   A    +   +G    +++ D D+   +   T +Y  
Sbjct: 782  CQELLRLFGLPYITAP-MEAEAQCAELLSLGLVDG----VVTDDSDIF--LFGGTRVYKN 834

Query: 158  VKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            +  +   +E      + K++ +   K++    L G   D   GIPG+G  +A  +L E+ 
Sbjct: 835  MFNQAKFVECYISNDLEKEYNLDRNKLIQFAHLLG--SDYTEGIPGVGPVSALEILTEFP 892

Query: 213  NLENILINASRIKQKKR---------RENILEYAETARL-----SRKLVMLRTDVPITIP 258
             LE+     S+++   +         R+   +      L      +++     +  +   
Sbjct: 893  TLEDFRDWWSQVQMGAKLPEDSHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSD 952

Query: 259  LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET 318
                     +   L  F        L++ +  + +     + PV+ D+N  E +G     
Sbjct: 953  PSAFQWGVPDLNALRQF--------LMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNI 1004

Query: 319  EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
                        F+       K   E+   +L  +
Sbjct: 1005 TNFFQGPQGAGAFAPHRRPDGKSRMEKAFSRLRHQ 1039


>gi|195164742|ref|XP_002023205.1| GL21087 [Drosophila persimilis]
 gi|194105290|gb|EDW27333.1| GL21087 [Drosophila persimilis]
          Length = 1153

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 90/311 (28%), Gaps = 82/311 (26%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +        T+T R         +      LG ++R    +PP  +L+ AD    EL I 
Sbjct: 763  ICPQVVACGTLTRRAMEPTWMTASNSRPNRLGSELRSMVQAPPGYRLVGADVDSQELWIA 822

Query: 759  AHIAKITPLYQVF-------------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + +       Q                N  D+H + A  +            R HAK IN
Sbjct: 823  SVLGDAYACGQHGATPLGWMTLSGSKANGSDMHSITAKAV---------GISRDHAKVIN 873

Query: 806  FSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HRFPGIHEYIEKTKNFVR 854
            ++ IYG        L  Q       SEA     + F        +    E+ ++ ++   
Sbjct: 874  YARIYGAGQQFAETLLRQFNPTFSASEAKAKAMKMFAITKGKRVYRLREEFHDELEDRAY 933

Query: 855  Q------------------------NGYVETIFGRR--------------------IHYD 870
                                      G  E+    R                       +
Sbjct: 934  SGYEASRLALQRNRTLGEVFHRPNWQGGTESAMFNRLEEIATGAQPKTPFLGGRLSRALE 993

Query: 871  EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
                P+   R +  R  IN  +Q  A D     ++S+   +       +  L  HDEL +
Sbjct: 994  SDGGPEQEQRFLPTR--INWVVQSGAVDFLHLMLVSMRWLM---GPHVRFCLSFHDELRY 1048

Query: 931  EVPEEEITTAS 941
             V E+    A+
Sbjct: 1049 LVQEDMAAKAA 1059


>gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
 gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
          Length = 1461

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 15/118 (12%)

Query: 410 AISTLDQKDDTSFKVE--TIFIDLSVHTSQDSTGKNTLTKE---------ILSYLKKFFE 458
           A+ + D        V    I++D+      D  G+  +            IL   K+FFE
Sbjct: 706 ALGSGDAGSAAGGPVRKDRIWVDIWSEVELDEEGRPIMDGRYVRLKPHHPILDEFKRFFE 765

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLD---SGRSSHDIASIAQKW 512
           +E   K+ HN  +D+ VL   GI   GF  D + M+ + D   SGR ++ + ++    
Sbjct: 766 DESVKKVWHNYGFDRHVLENMGICCAGFGGDTLHMARLADASRSGRRTYGLDNLTADH 823



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 33/129 (25%)

Query: 668  IKNILEWRQLSKIKSTYADSLPNHINKRT----------------QRVHTFYSLASTMTG 711
            ++ + E   + K+ S +   L +     T                 RVH   ++ +T TG
Sbjct: 1333 VEALCEINAIEKLLSAFIIPLQSDATSTTTVLPNPPGRDTPSRAVHRVHCSLNI-NTETG 1391

Query: 712  RLASLE--------------PNLQNIPIKTDLGQKIRRAFISP--PTKKLISADYSQIEL 755
            RL++                PNLQN P       K+RRAF +       L+ ADY Q+EL
Sbjct: 1392 RLSARRHVCCEMRLHISAVVPNLQNQPALEKDRYKVRRAFTADTEGGNTLVVADYGQLEL 1451

Query: 756  RILAHIAKI 764
            RILAH+   
Sbjct: 1452 RILAHMTNC 1460


>gi|320156431|ref|YP_004188810.1| phage exonuclease [Vibrio vulnificus MO6-24/O]
 gi|319931743|gb|ADV86607.1| phage exonuclease putative [Vibrio vulnificus MO6-24/O]
          Length = 281

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 25/218 (11%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPL----LSRKHD--GLPVNAIAGFCNMLWKLLQNSRK 54
           M K   L L D   F ++A  AT +    L    +  GL  N    F +++ + +   RK
Sbjct: 1   MSKIKKLGLFDLDIFAFQA-NATAMEEVFLQNGDEFIGLMTNMTQAFDSVVSR-IDEIRK 58

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
           +       +        +R ++ P YK+NR  + + +     L R   + +         
Sbjct: 59  QLKLDKVVMCL-TDDHNWRKDVLPTYKSNRKDVRKPVGL-AELKRRLGEHYE--TYLRPS 114

Query: 115 FEADDIIATYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKK 171
            EADD++            +   +IS DKD+  L      LY+  K+     + E     
Sbjct: 115 LEADDVMGILATWKGFHPDYRKIVISEDKDMKTLP---VWLYNPAKDFEPWFNSEEDADL 171

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           + +        Q L GD  D   G P IG  TA  +L+
Sbjct: 172 FHLC-------QTLAGDVTDGYSGCPSIGMDTAKQMLK 202


>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
 gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
          Length = 388

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 77/212 (36%), Gaps = 29/212 (13%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            +  +  + N   +    Q L++    +  +  D+M  +  K   + I        TS  
Sbjct: 11  EDPDFVLVDNDNALADLTQSLQSQKCIAVDLEADSMFHYQEKACLLQI--------TSNG 62

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
           +  I   L                  +  L    EN+   KI H   YD   L R +GI 
Sbjct: 63  LNYIVDPL--------------CDCDVKALAPILENDEIQKIFHGADYDVRCLFRDFGIE 108

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           +    D  + +  L   ++   +A + +       ++  K +K +  +  +    +  +A
Sbjct: 109 LHNLFDTQVAARFLGEPQT--GLAPLLESRFGVQLEK--KYQKKNWSLRPLPPEMMA-YA 163

Query: 543 IENSNVILQLWLLLRPKL-IVEKLLHVYERLD 573
             ++  +L+L  +L+ +L   ++L  V E  +
Sbjct: 164 ANDTVHLLELAEILKKELVEKDRLFWVEEECE 195


>gi|314121823|ref|YP_004063942.1| RnaseH [Enterobacteria phage vB_EcoM-VR7]
 gi|313151580|gb|ADR32636.1| RnaseH [Enterobacteria phage vB_EcoM-VR7]
          Length = 314

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 19/172 (11%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP---- 96
             N + K +   +K         + +     +R      YK NR K  E           
Sbjct: 52  VLNSIRKNIVQFKKLGYTIPIICVDNSKNGYWRRTKSYYYKKNRAKAREESQFDWEGLHA 111

Query: 97  ----LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPT 151
               ++    +      + +   EADD IA  T +    G  V I+S+D D  QL   P 
Sbjct: 112 AMHIIIDEMEKYMPYIVMNMDKVEADDHIAVLTKLLTGLGHPVMIVSSDGDFTQLHKFPG 171

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVC--LQALTGDSIDNIPGIPGIGY 201
              +  ++++     +V  K G   + ++    + + GD  DN+  I   G 
Sbjct: 172 VKQWSPMQKK-----YVKTKSG---DALMDCVTKVVKGDKKDNVSSIKVRGD 215


>gi|317374924|sp|A4QS18|FEN1_MAGO7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 394

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 21/187 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            R   +  GIP I     EA+   A         G      S D D +   SP    + T
Sbjct: 141 CRQLLKLMGIPYIIAP-TEAEAQCAVLAR----AGKVFAAASEDMDTLCFDSPILLRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++I ++ V++   +  ++ V L  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEARKEPIQEIHVDKVLEGLDMDRKQFVDLCILLG--CDYLDPIPKVGPSTALKLIREH 253

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           G+LE I     ++K+ + +  + E    E A   R L       P   P  +   E  + 
Sbjct: 254 GSLETI---VEKMKKGELKYTVPEDWPFEDA---RDLFFNPAVHPADHPDCNFKWEKPDV 307

Query: 270 PRLISFL 276
             L+ +L
Sbjct: 308 EGLVKYL 314


>gi|317013868|gb|ADU81304.1| 5'-3' exonuclease [Helicobacter pylori Gambia94/24]
          Length = 258

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E             +A  I  +E                
Sbjct: 47  GRESFRYQLCDHYKQKRHQFDEGFRS-------LLKALKIALVEKYPLKKGAKIQGEHCF 99

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 100 EYEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 153

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 154 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 206

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 207 SDSEAKEKALLNMRLVNMH 225


>gi|326536458|ref|YP_004300889.1| RNaseH ribonuclease [Aeromonas phage 65]
 gi|312262804|gb|ADQ53060.1| RNaseH ribonuclease [Aeromonas phage 65]
          Length = 306

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 33/217 (15%)

Query: 1   MQKE-NHLFLVD-----GSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK 54
           M     +L L+D      S+ +Y  +++   +       P+NA     + L   +   + 
Sbjct: 11  MNDGVQNLQLIDYSQIVISNLMY--YFSPGDII-----EPINARKIIIDALRSHVLKHKN 63

Query: 55  ESIASHFAVIFDYPAVTFRNEIY-PDYKANRPKIPEMLLPQLPLV--------RLATQAF 105
           E      AV  D     +R +   P YK +R KI +        +        +      
Sbjct: 64  EYPNIVIAV--DSVDGYWRRDRVAPYYKKHREKIKDDSGWDWNAIYSAMNLVRQELINHL 121

Query: 106 GIPAIEIQGFEADDIIATYTY--IAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEK 162
               + I G EADDI         +      + I S D D  QL        ++ + ++ 
Sbjct: 122 PYKTLYIPGAEADDIFGVLVKHLKSVDPSVKIHITSADGDFTQLQKYDGVRQWNPMHKKW 181

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGI 199
                V  ++G  PE+ + ++ + GD  D I  I  +
Sbjct: 182 -----VKPEYG-SPERDLLVKIIKGDRKDTISNIFSV 212


>gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
          Length = 381

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 82/245 (33%), Gaps = 32/245 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I     +++   +L      +  +  D+M  +  K   I  +              I 
Sbjct: 9   EIITTVDGVRRLADRLGREPIVACDLEADSMHHYQEKVCLIQFAVPGYA--------AIV 60

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
             L+                 +S L   F N    K+ H   YD   LHR +G+ +    
Sbjct: 61  DPLAAPD--------------ISPLAPLFANAAIRKVFHGADYDIRSLHRDFGMEVNNLF 106

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D M+   +L  G     +A+  +K       E+ K  + +    +     + E+A++++ 
Sbjct: 107 DTMIACQLL--GEREFGLAAQLRKRFGV---ELDKQYQRADWSRRPLTPGMIEYAVKDTT 161

Query: 548 VILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
           ++++L   L   L  +     V E  +      V++       +     K  S    + L
Sbjct: 162 LLIELCWQLATDLEAKGRRGWVEEECELLSRVRVAERGDEPFFL---RFKGASRMDGRTL 218

Query: 607 LSLEE 611
             LEE
Sbjct: 219 AVLEE 223


>gi|118596594|dbj|BAF37956.1| putative flap endonuclease-1 [Sulfolobus sp. G81]
          Length = 304

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 87/189 (46%), Gaps = 24/189 (12%)

Query: 99  RLATQAFGIPAIEIQG---FEADDI-IATYTYIAEKEGFAVTIISTDK--DLMQLVS--- 149
           +   +A GIP ++       EA  I I   ++    + +   +    +    + L     
Sbjct: 91  KELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLVRNLTLSGKRK 150

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+++ ++KK G+  E+++ +  + G   D  P GI G G KTA  +
Sbjct: 151 LPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVG--TDYNPDGIKGYGVKTAYRI 208

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           +++YG+LE  +     I + K   N+ E   +  L+ ++V  +         E+L L DC
Sbjct: 209 IKKYGSLEKAIEK-GEIPKIKVNFNVEEIR-SLFLNPQVVEPK---------ENLELADC 257

Query: 268 NGPRLISFL 276
           +G +++  L
Sbjct: 258 DGNKILDIL 266


>gi|291335807|gb|ADD95407.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C849]
          Length = 124

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
           + R  F + P   ++ AD + IELR+LAH          ++       ++  +I  VN +
Sbjct: 9   EFRELFTASPGMTMVGADLAGIELRMLAHYLGR------YDGGRYADILLNGDIHQVNAD 62

Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827
           K+    RR  KT++++ +YG    +L        SE
Sbjct: 63  KIGI-SRRQVKTVSYAYLYGAGNLKLGLSYDSTLSE 97


>gi|258573689|ref|XP_002541026.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
 gi|237901292|gb|EEP75693.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
          Length = 413

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 20/189 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   SP    + T
Sbjct: 159 CKKLLKLMGIPYINAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 213

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++  G+  +  V L  L G   D +  IP +G  TA  L++++
Sbjct: 214 FSEQRKEPILEIHLDRVLEGLGMDRKTFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 271

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           G+LE ++         K++  I +    E A   R L       P   P      E  + 
Sbjct: 272 GSLEKVVEAMKN--DPKQKYTIPDDWPYEQA---RDLFFEPDVRPADHPECDFKWEAPDV 326

Query: 270 PRLISFLKA 278
             L+ FL  
Sbjct: 327 EGLVKFLVE 335


>gi|307207302|gb|EFN85052.1| DNA polymerase subunit gamma-1, mitochondrial [Harpegnathos saltator]
          Length = 1161

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 97/320 (30%), Gaps = 87/320 (27%)

Query: 688  LPNHINK---RTQRVHTFYSLA---STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741
            LP+ + K   RT R  T         T+T R         +      +G ++R    +PP
Sbjct: 744  LPSAVTKFKRRTARYGTIIPQVVVSGTLTRRAVERTWMTASNASPERIGSELRSMVQAPP 803

Query: 742  TKKLISADYSQIELRIL-----AHIAKITPLYQVF---------ENSLDIHRMVAAEIFG 787
               ++ AD    EL I      AH +        F          N  D+H + A  +  
Sbjct: 804  GYNIVGADVDSQELWIASMLGDAHHSGSIHGATPFGWMTLIGTKSNGTDMHSVTAKAV-- 861

Query: 788  VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-------RIPRSEAADYIKRY----- 835
                      R HAK IN++ IYG    + A QL             AA   K +     
Sbjct: 862  -------GISRDHAKVINYARIYGAGQ-KFAEQLLKQFNPSMTDAEAAAKSRKMFTLTKG 913

Query: 836  ----------------------FHRFPGIHEYIEKTKNFVRQNGYV------------ET 861
                                  F  +     Y +  +   +++ +V            E 
Sbjct: 914  KKVFRLKAEFVNDNIEDIPYTSFQAYQIAKLYGKTLQEMFQRSEWVGGSESAMFNRLEEI 973

Query: 862  IFGRRIHYDEINSP--------KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
                R     +NS          +   +      IN  +Q  A D     ++S+   + D
Sbjct: 974  ASSERPVTPFLNSRLSRALEVTNTDNDDNFLPTKINWVVQSGAVDFLHLMLVSMRWLMRD 1033

Query: 914  HKLATKMLLQIHDELVFEVP 933
                 +  L  HDE+ + VP
Sbjct: 1034 ---NARFCLSFHDEVRYLVP 1050


>gi|289582877|ref|YP_003481343.1| flap structure-specific endonuclease [Natrialba magadii ATCC 43099]
 gi|289532430|gb|ADD06781.1| flap structure-specific endonuclease [Natrialba magadii ATCC 43099]
          Length = 325

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 47/249 (18%)

Query: 7   LFLVDGSSFIYRAFY-------ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
           +  VD  +++YR  Y        +       DG  V  + G    L K  +N   +    
Sbjct: 23  VVAVDAHNWLYR--YLTTTVKWTSSSKYTTADGTEVANLIGIVQGLPKFFEN---DVTP- 76

Query: 60  HFAVIFDYP-------AVTFRNEIYPDYKAN----RPKIPEMLLPQ--------LPLV-- 98
              ++FD          +  R E    Y+      R +  E+ + Q         P +  
Sbjct: 77  --VMVFDGGPSELKEDEIESRREQRQTYEEQLETAREEGDEVAIAQLESRTQRLTPTIQE 134

Query: 99  --RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
             R   +   +P +E    E +   A      + +     + S D D +   +P T    
Sbjct: 135 TSRELLRLLDVPIVEAPA-EGEAQAAHMVRRGDAD----YVGSEDYDALLFGAPYTLRQL 189

Query: 157 TVKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           T K   E +D+E  +    +  E+++    L G   D   GI GIG KTA   + E+G+L
Sbjct: 190 TSKGDPELMDLEATLDHHDLTLEQLIDAAILIG--TDFNEGISGIGPKTALTEISEHGDL 247

Query: 215 ENILINASR 223
            ++L     
Sbjct: 248 WSVLEARGE 256


>gi|224092356|ref|XP_002309573.1| predicted protein [Populus trichocarpa]
 gi|222855549|gb|EEE93096.1| predicted protein [Populus trichocarpa]
          Length = 364

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQV-FENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
               L++ADYSQIELR++ H +K + L ++  +   D+  M+AA   G   + V+   R 
Sbjct: 272 DNWLLLTADYSQIELRLMEHFSKDSTLIELPAKPHGDVFIMIAARWTGKPEDSVNSVERD 331

Query: 800 HAKTI 804
             K +
Sbjct: 332 QTKRL 336


>gi|117923642|ref|YP_864259.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
 gi|117607398|gb|ABK42853.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
          Length = 213

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 75/220 (34%), Gaps = 27/220 (12%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
               +    ++  D  Q+ Q+       +    T  +D    +   + +  +  +     
Sbjct: 3   TAPLTIHTFIDDLDEAQF-QRYMKSPFLAVDTETMGLDINRDRLCVVQMCDVTGEVSV-V 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGI 481
           ++                            LK   E     KI H  ++D   + R   I
Sbjct: 61  QIRNYQAP---------------------RLKALMEAPEVEKIFHFARFDLATMKRWLDI 99

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            ++      + S ++ +   SH +  ++Q+ L     +  + + S    ++++  Q+ ++
Sbjct: 100 EIKPVFCTKIASKLVRTYTGSHGLKDVSQELLGVVMDK--QQQSSDWGAEQLTPEQL-QY 156

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           A  +   ++++   L   L  E  L + + + + +   V+
Sbjct: 157 AASDVIHLVEIRARLVEMLAREGRLQLADEIMRFLPTRVA 196


>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa]
 gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]
          Length = 858

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 64/391 (16%), Positives = 139/391 (35%), Gaps = 48/391 (12%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +     PI + S+  +   KD+++   KL  +   +  +                     
Sbjct: 221 EPAPPLPIESTSFKLVEEVKDLKELAAKLRGVNEFAVDLE-------------------- 260

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                SF+  T  + +S  T         L   +  YL++ F++    K+ H    D + 
Sbjct: 261 HNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDVVW 320

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R +GI +    D    S VL      + +  +   +   T     K  +++    +  
Sbjct: 321 LQRDFGIYICNLFDTGQASRVL--KLERNSLEHLLHHFCGVTAN---KEYQNADWRLRPL 375

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             ++  +A E+++ +L ++ L+R  L+ + + +  E  D P+++V  +            
Sbjct: 376 PDEMIRYAREDTHYLLHIYDLMRALLLSKPIDN--ENADPPLLEVYKRSYDV-------C 426

Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI--LFTKLKFPSGAKTKTGQWKT 652
           ++    E+      L  N+Y L    FN    +QL  +  L+      + A+ ++  +  
Sbjct: 427 MQLYEKELFTENSYL--NMYGLPSAGFN---AQQLAIVAGLYEWRDAIARAEDESTGYIL 481

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712
             + L +I      +   I + RQL K K +Y +    H++     +      ++     
Sbjct: 482 PNKTLLEIAK---EMPVTISKLRQLLKSKHSYIE---RHLSSVVSIIRHSMQTSAAFEAA 535

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           +  L+     I  + +          S P  
Sbjct: 536 VQHLKERHMEIASQEETEANDGSEARSIPGG 566


>gi|196004300|ref|XP_002112017.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
 gi|317376198|sp|B3RVF0|FEN1_TRIAD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|190585916|gb|EDV25984.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
          Length = 377

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 23/187 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYDT 157
           +   +  G+P ++    EA+   A            V    + D D +   S     + T
Sbjct: 142 KKLLKLMGVPVVQAPC-EAESQCAALVKAG-----KVYATGTEDMDALTFGSNVMLRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  +++ +++     E+ + L  L G   D    I G+G K A  L+++Y
Sbjct: 196 FSEARKMPIQEFHLKNALQELNFSMEQFIDLCILLG--CDYCDSIKGVGPKRAVGLIEKY 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++E+I+ N S  K         + A    L+        DV     +E L   + +   
Sbjct: 254 KSIEDIVKNISSEKFTVPENWPYKDARMLFLN-------PDVEKCEDME-LKWTEPDADE 305

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 306 LVKFLVE 312


>gi|225685184|gb|EEH23468.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb03]
          Length = 359

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   SP    + T
Sbjct: 105 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 159

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP IG  TA  L++++
Sbjct: 160 FSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLG--CDYLDPIPKIGPNTALKLIRDH 217

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E     + +R+L           P      E  +   
Sbjct: 218 GSLEKVVEAIESDPKKKY--VIPEDWPY-KDARELFFDPDVRKADHPDCDFKWEAPDVEG 274

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 275 LVKFLVE 281


>gi|317028500|ref|XP_001390185.2| single-stranded DNA endonuclease [Aspergillus niger CBS 513.88]
          Length = 1100

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 101/307 (32%), Gaps = 36/307 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    II+ 
Sbjct: 756  KKDRRDADEVSQVMITECQQLLRLFGLPYITAP-MEAEAQCAELVSLGLVDG----IITD 810

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +  +   +E      + K++ +   K++ L  L G   D   G
Sbjct: 811  DSDVF--LFGGTRVYKNMFNQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLG--SDYTEG 866

Query: 196  IPGIGYKTAALLLQEYGNLENILI---------NASRIKQKKRRENILEYAETARL---- 242
            IPGIG  TA  +L E+G LE+            N          +   ++A    L    
Sbjct: 867  IPGIGPVTALEILTEFGTLEDFRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSF 926

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
               ++     +  +            +   L  F        L++ +  + +     + P
Sbjct: 927  PDPRVDAAYLEPEVDSDPSPFQWGVPDLHGLRDF--------LMSTIGWSQERTDEVLVP 978

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            V+ D+N  + +G                 F+       +   E+   +L  +        
Sbjct: 979  VIRDMNRRDQEGTQSNITSFFSGPQGAGAFAPRVRSGGQTRMEKAFSRLRQQAASVEQPD 1038

Query: 362  PINNDSY 368
                D Y
Sbjct: 1039 STGVDGY 1045


>gi|134057863|emb|CAK38230.1| unnamed protein product [Aspergillus niger]
          Length = 916

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 101/307 (32%), Gaps = 36/307 (11%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K +R    E+    +   +   + FG+P I     EA+   A    +   +G    II+ 
Sbjct: 572 KKDRRDADEVSQVMITECQQLLRLFGLPYITAP-MEAEAQCAELVSLGLVDG----IITD 626

Query: 141 DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           D D+   +   T +Y  +  +   +E      + K++ +   K++ L  L G   D   G
Sbjct: 627 DSDVF--LFGGTRVYKNMFNQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLG--SDYTEG 682

Query: 196 IPGIGYKTAALLLQEYGNLENILI---------NASRIKQKKRRENILEYAETARL---- 242
           IPGIG  TA  +L E+G LE+            N          +   ++A    L    
Sbjct: 683 IPGIGPVTALEILTEFGTLEDFRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSF 742

Query: 243 -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              ++     +  +            +   L  F        L++ +  + +     + P
Sbjct: 743 PDPRVDAAYLEPEVDSDPSPFQWGVPDLHGLRDF--------LMSTIGWSQERTDEVLVP 794

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
           V+ D+N  + +G                 F+       +   E+   +L  +        
Sbjct: 795 VIRDMNRRDQEGTQSNITSFFSGPQGAGAFAPRVRSGGQTRMEKAFSRLRQQAASVEQPD 854

Query: 362 PINNDSY 368
               D Y
Sbjct: 855 STGVDGY 861


>gi|294661468|ref|YP_003579921.1| RnaseH [Klebsiella phage KP15]
 gi|292660629|gb|ADE34877.1| RnaseH [Klebsiella phage KP15]
          Length = 311

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 92/277 (33%), Gaps = 42/277 (15%)

Query: 42  CNMLWKLLQNSRKESIASH------FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL 95
             M+  L+ ++ + ++           + FD     +R +    YK  R    E      
Sbjct: 50  IEMIRHLVLDTLRFNVVKFKGEYPEIVIAFD-DRNYWRRQKAWYYKKRRQIEHEESEWDW 108

Query: 96  --------PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
                   P+     Q      ++++  EADDIIA  T  A  EG  V ++S D D  QL
Sbjct: 109 DRLNNFLNPVFEEIRQNMPYLGLKVEFAEADDIIAVVTKKAVGEGRRVLVVSADSDFTQL 168

Query: 148 VSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
                   +   +++ +       K+G  P   +  + + GD  D+I  I          
Sbjct: 169 QKYNGVRQWSPPQKKWVTP-----KYG-SPRNDLRYKNIKGDKKDSIACIKIRNDYIVTK 222

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEY-------AETARLSRKLVMLRTDVP-ITIP 258
                  +E     A  +K  +    +           E A   ++      D   I   
Sbjct: 223 -------VEG--ERAPAVKSSELEAWLEADDPTTLMTPEWAARYKE-NEELRDFEFIPKD 272

Query: 259 LEHLILEDCNGPR--LISFLKALEFTKLINRVATTYD 293
           +E+ I+E  N P+    + ++       ++R+     
Sbjct: 273 IENSIIEAYNTPKSGSKAKMERYFMDNKLSRMFEKLS 309


>gi|17510005|ref|NP_491168.1| Cell-death-Related Nuclease family member (crn-1) [Caenorhabditis
           elegans]
 gi|75023012|sp|Q9N3T2|FEN1_CAEEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
           death-related nuclease 1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|7331965|gb|AAF60653.1| Cell-death-related nuclease protein 1, confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|31747251|gb|AAP57297.1| cell death-related nuclease 1 [Caenorhabditis elegans]
          Length = 382

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 89/280 (31%), Gaps = 54/280 (19%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
           +  DG   + + G   ML + ++         +   +FD      +          R + 
Sbjct: 54  QSEDGETTSHLMG---MLNRTVRMFENGVKPVY---VFDGKPPDMKGGELEKRSERRAEA 107

Query: 88  PEML-----------------------LPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                         Q    +      GIP +E    EA+   A  
Sbjct: 108 EKALTEAKEKGDVKEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPC-EAEAQCAHL 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPT--------TCLYDTVKEEKIDIEHVIKKWGIPP 176
               +  G     ++ D D +   S                +KE   ++   +++  +  
Sbjct: 167 VKAGKVFGT----VTEDMDALTFGSTVLLRHFLAPVAKKIPIKE--FNLSLALEEMKLSV 220

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           E+ + L  L G   D    I G+G K A  L++++ N+E IL N  + K     +   + 
Sbjct: 221 EEFIDLCILLG--CDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKYPPPEDWPYKR 278

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           A    L+ ++               L  ++ +   +I FL
Sbjct: 279 ARELFLNPEVTKP--------EEVELTWKEADVEGVIQFL 310


>gi|238484915|ref|XP_002373696.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
 gi|220701746|gb|EED58084.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
          Length = 1135

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 99/306 (32%), Gaps = 32/306 (10%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +     FG+P I     EA+   A    +   +G    II+ 
Sbjct: 793  KKDRRDADEVSQIMISECQQLLTLFGLPYITAP-MEAEAQCAELVALGLVDG----IITD 847

Query: 141  DKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D+              + + ++      + K++ +   K++    L G   D   GIP
Sbjct: 848  DSDIFLFGGTRVYKNMFNQGKFVECYLTSDLEKEYALHRRKLISFAHLLG--SDYTEGIP 905

Query: 198  GIGYKTAALLLQEYGNLENILI---------NASRIKQKKRRENILEYAETARLSR---- 244
            GIG  TA  +L E+ NLE             N S  +     +   + A    LS     
Sbjct: 906  GIGPVTALEILTEFSNLEEFRDWWTQVQMGMNLSDGEHAAFYKKFRKQASKIFLSPSFPN 965

Query: 245  -KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
             ++ +   +  +            +   L  F        L+  +  + +     + PV+
Sbjct: 966  SQVDVAYLEPEVDSDPSPFQWGVPDLHGLRDF--------LMATIGWSQERTDEVLVPVI 1017

Query: 304  LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             D+N  E +G                 F+       +   E+   +L  E   +  Q   
Sbjct: 1018 RDMNRREQEGTQSNITAFFQGPQGAGAFAPRVRSGGQSRMEKAFSRLRQEAGSEAVQSAQ 1077

Query: 364  NNDSYT 369
            +  + T
Sbjct: 1078 STGAET 1083


>gi|316967624|gb|EFV52031.1| flap endonuclease 1a [Trichinella spiralis]
          Length = 381

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 68/184 (36%), Gaps = 19/184 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYI-----AEKEGFAVTIISTDKDLMQLVSPTT 152
            +   +  GIP IE    EA+   A          A  E        +D  L  L     
Sbjct: 151 CKRLLKLMGIPYIEAPC-EAEAQCAALVKAKKVFAAATEDMDTLTFGSDIMLRYLTFSEA 209

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                +KE + D   V+    +  E+ V    L G   D  P I G+G K A  L+++Y 
Sbjct: 210 KKM-PIKEFRFD--DVLHGLNMTHEEFVDFCILLG--CDYCPTIKGVGPKKAYDLIKQYR 264

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL 272
           NLE I+    + K+    EN  +Y       RKL        I      L  +D +   L
Sbjct: 265 NLEVIVEKLDK-KKYPIPENW-QYKAV----RKL--FLEPEVIDCNTIELTWKDPDEQGL 316

Query: 273 ISFL 276
           I+FL
Sbjct: 317 ITFL 320


>gi|298675706|ref|YP_003727456.1| flap structure-specific endonuclease [Methanohalobium evestigatum
           Z-7303]
 gi|298288694|gb|ADI74660.1| flap structure-specific endonuclease [Methanohalobium evestigatum
           Z-7303]
          Length = 338

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 91/274 (33%), Gaps = 70/274 (25%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKES 56
           N    +D  + +Y+       + R+ DG P         + ++G    +  L++   K  
Sbjct: 21  NKTVAIDAYNTLYQ----FLSIIRQRDGTPLQDSKGRTTSHLSGILYRITNLVEEDIKP- 75

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPK-------------IPEMLL----------P 93
                  +FD     F+ +     K +R                 E              
Sbjct: 76  -----VFVFDGKPPDFKTDTLEKRKQSRENANQKWNEAKEKGLTEEAYKYAQGSARIDDQ 130

Query: 94  QLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
            L   +   ++ GIP ++    E +   A      + +     + S D D +   +P   
Sbjct: 131 ILDDAKYLLESMGIPYLQSPS-EGEAQAAHMVQKGDAD----YVGSQDYDALLFGAPHVI 185

Query: 154 LYDTVKEEK---------------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
              T+  ++               ID+E  +K  GI   K++ +    G   D   G+  
Sbjct: 186 RNLTITGKRKLPGKNTYIDLKPETIDMEENLKSMGITRSKLIDIALCVG--TDYNKGLEK 243

Query: 199 IGYKTAALLLQEYGNLENI-------LINASRIK 225
           IG K A  L++ + ++++I       + N  ++K
Sbjct: 244 IGPKRALKLVKTHDSIKSIIDETGQNIENVDKVK 277


>gi|218245974|ref|YP_002371345.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
 gi|218166452|gb|ACK65189.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
          Length = 210

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 73/211 (34%), Gaps = 26/211 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +     + + +     + +    T  +     +   + +       D S  V  I I+
Sbjct: 9   VCDRDLSDETLSRYLAATAIAVDTETMGLIPQRDRLCLVQLC------DPSGFVTAIRIE 62

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
                +                LK+  E +  LK+ H  ++D   L   +GI  +     
Sbjct: 63  RGQKEAP--------------KLKQLMEAKTILKVFHYARFDVAQLRYHFGIETQPIFCT 108

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +  SSH + S+ Q+       E+ K+ +SS   +  + S  Q  +A  +   
Sbjct: 109 KIASKLARTYTSSHGLKSLVQELEGI---ELDKTSQSSDWGNSANLSVAQLSYAANDVRY 165

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           ++     L   L  E+   + E+     I V
Sbjct: 166 LIPAKEKLITMLQREERWQLAEQC-FNCIPV 195


>gi|241954550|ref|XP_002419996.1| DNA-repair protein RAD2 orthologue, putative; single-stranded DNA
           endonuclease, putative [Candida dubliniensis CD36]
 gi|223643337|emb|CAX42212.1| DNA-repair protein RAD2 orthologue, putative [Candida dubliniensis
           CD36]
          Length = 992

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 80/220 (36%), Gaps = 28/220 (12%)

Query: 75  EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
           E +   K +  ++ E ++     V+   + FGIP I     EA+   A    I   +G  
Sbjct: 715 EKFQKAKRDSDEVTEAMIND---VQELLKRFGIPYITAP-MEAEAQCAELFKIGLVDG-- 768

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
             I++ D D               ++   E    + +  K  +   K++ L  L G   D
Sbjct: 769 --IVTDDSDCFLFGGDKIYKNMFDQKQYVEFYLQDDLFNKMALTQHKLIELALLLG--SD 824

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILI----NASRIKQK----KRRENILEYAETARLS 243
              GI GIG   A  +L E+GNLE        +A  +  K    K ++++L+  +  +L 
Sbjct: 825 YTEGIKGIGPVQAMEILAEFGNLEKFKEWFDKHAKTVADKTELTKLQKSLLDRIKKGKLF 884

Query: 244 -------RKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                  + +        +            +  ++ SFL
Sbjct: 885 LPDSFPDKVVEQAYISPEVDSDKTEFQWGVPDLDQIRSFL 924


>gi|116203453|ref|XP_001227537.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88175738|gb|EAQ83206.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 378

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 22/188 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   +P    + T
Sbjct: 124 CQRLLKLMGIPYILAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFNTPILLRHLT 178

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +E V++   +  ++ V L  L G   D +  IP +G  TA  L++E+
Sbjct: 179 FSEQRKEPIQEIHVEKVLEGLNMERKQFVDLCILLG--CDYLDPIPKVGPSTALKLIREH 236

Query: 212 GNLENILINASRIKQKKRR---ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268
           G+LE ++       + +     +   E A     S   V    D     PL     +  +
Sbjct: 237 GSLEKVVEFMKNDPKSRYTVPDDWPFEDARDLFFSPD-VRQADD-----PLCDFKWDKPD 290

Query: 269 GPRLISFL 276
              L+ FL
Sbjct: 291 MEGLVKFL 298


>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
 gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
          Length = 702

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 98/266 (36%), Gaps = 31/266 (11%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +    + +  +T + + K + +  +KL+ +   +  +                     
Sbjct: 139 EPVKPAALEDTPFTLVEDHKGLVELAKKLKGVTEFAVDLE-------------------- 178

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                SF+  T  + +S  T         L   I  YL++ F++    K+ H    D + 
Sbjct: 179 HNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMW 238

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R + I +    D    S VL   R+S  +  +   +   T K   K  +++    +  
Sbjct: 239 LQRDFHIYVCNLFDTGQASRVLQMERNS--LEHLLLHFCGVTAK---KEYQNADWRSRPL 293

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH--VYERLDKPMIDVVSQMEITGIQIDQ 592
             ++ ++A E+++ +L ++ L+R +L  E      +   + K   ++  Q     +  D 
Sbjct: 294 PDEMIKYAREDTHYLLYIYDLMRQRLQKESTFENDLLLEVHKRSNEICLQFYEKELLTDT 353

Query: 593 DLLKQ---VSAEISKNLLSLEENIYD 615
             L        E+    L++   +++
Sbjct: 354 SYLHIYGLQEHELDAKQLAVVAALHE 379


>gi|330868873|gb|EGH03582.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 198

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
           +A ++    L +++ +  D+++ VA +IF           R+ AK +  S  YG+    L
Sbjct: 1   MAALSGDEKLLELYADG-DLYKQVANDIFE------GEGRRKEAKRLFLSYAYGMKNRHL 53

Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877
                          K +F +F    E+     +   ++  + T+ G  +          
Sbjct: 54  I-DAAFGYGADRRATKTFFKQFGKFEEWKISVHDSFGKDQRIGTVLGNYLK----RDRTG 108

Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
            + +  +R+A++  +QG+A+ I +++++ +        L   M    HD ++FE
Sbjct: 109 PLTDKEKRSAVSQLVQGTASLIFKKSLMKLRDE-AGAGLKVPM----HDAVLFE 157


>gi|225439201|ref|XP_002269553.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 912

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 114/335 (34%), Gaps = 56/335 (16%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I +  +  +   +D+++   KL  +   +  +                         
Sbjct: 219 PPSIEDTPFKLVEEVRDLKELAAKLCCVNEFAVDLE--------------------HNQY 258

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR- 478
            SF+  T  + +S  T         L   +  YL++ F++    K+ H    D + L R 
Sbjct: 259 RSFQGLTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRD 318

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537
           +GI +    D    S VL      + +  +   +   T  KE         P+      +
Sbjct: 319 FGIYICNMFDTGQASRVL--KLERNSLEHLLHHYCGVTANKEYQNGDWRLRPL----PHE 372

Query: 538 VQEHAIENSNVILQLWLLLRPKL----IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  +A E+++ +L ++ L+R +L     +E    +   + K   D+  Q+    +  D  
Sbjct: 373 MLRYAREDTHYLLHIYDLMRTQLLSMAELENSNALLLEVYKRSFDICMQLYEKELLTDSS 432

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI--LFTKLKFPSGAKTKTGQWK 651
            L                  Y L G  FN    +QL  +  LF      + A+ ++  + 
Sbjct: 433 YL----------------YTYGLQGAHFN---AQQLAIVAGLFEWRDVVARAEDESTGYI 473

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
              + L +I      +     + R+L K K  Y +
Sbjct: 474 LPNKTLLEIAKQ---MPVTTSKLRRLLKSKHPYVE 505


>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]
          Length = 901

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 114/335 (34%), Gaps = 56/335 (16%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              I +  +  +   +D+++   KL  +   +  +                         
Sbjct: 208 PPSIEDTPFKLVEEVRDLKELAAKLCCVNEFAVDLE--------------------HNQY 247

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR- 478
            SF+  T  + +S  T         L   +  YL++ F++    K+ H    D + L R 
Sbjct: 248 RSFQGLTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRD 307

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537
           +GI +    D    S VL      + +  +   +   T  KE         P+      +
Sbjct: 308 FGIYICNMFDTGQASRVL--KLERNSLEHLLHHYCGVTANKEYQNGDWRLRPL----PHE 361

Query: 538 VQEHAIENSNVILQLWLLLRPKL----IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +  +A E+++ +L ++ L+R +L     +E    +   + K   D+  Q+    +  D  
Sbjct: 362 MLRYAREDTHYLLHIYDLMRTQLLSMAELENSNALLLEVYKRSFDICMQLYEKELLTDSS 421

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI--LFTKLKFPSGAKTKTGQWK 651
            L                  Y L G  FN    +QL  +  LF      + A+ ++  + 
Sbjct: 422 YL----------------YTYGLQGAHFN---AQQLAIVAGLFEWRDVVARAEDESTGYI 462

Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
              + L +I      +     + R+L K K  Y +
Sbjct: 463 LPNKTLLEIAKQ---MPVTTSKLRRLLKSKHPYVE 494


>gi|70728873|ref|YP_258622.1| ribonuclease D [Pseudomonas fluorescens Pf-5]
 gi|68343172|gb|AAY90778.1| ribonuclease D [Pseudomonas fluorescens Pf-5]
          Length = 377

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + Q   + + +   +       +D F+  PIA  +   D +           
Sbjct: 6   HWIRDNDSLGQLCAQWQQLPFVALDTEFMRVDTFY--PIAALLQIGDGQRAYLI------ 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + LT +    L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLTIDNWQPLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLGI---DLPKGETRSDWLQRPLSETQVSYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + Q++  LRP+L  +K   V E 
Sbjct: 160 HLAQVFTELRPRLSEDKYRWVLED 183


>gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099]
 gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099]
          Length = 206

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            +G+ +    T  ++    +   + IS  D                S    Q + G+   
Sbjct: 18  NVGAVAIDTETLGLNPHRDRLCLVQISPGDG---------------SADVIQIAPGQKKA 62

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L     N    K+ H  ++D  VL+  +G+         + S +  +    H 
Sbjct: 63  PN-----LVSLLRNRSVTKLFHFGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHG 117

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  I  + L      + K+++SS    +    +  E+A  +   + +L  +L  +L  E 
Sbjct: 118 LKDICFELLGVG---LSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAREG 174


>gi|260460457|ref|ZP_05808708.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
 gi|259033562|gb|EEW34822.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
          Length = 206

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 24/180 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            +G+ +    T  ++    +   + IS  D                S    Q + G+   
Sbjct: 18  NVGAVAIDTETLGLNPHRDRLCVVQISPGDG---------------SADVIQIAPGQKKA 62

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L     N    K+ H  ++D  VL+  +G+         + S +  +    H 
Sbjct: 63  PN-----LVSLLRNRGITKLFHYGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHG 117

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  I  + L      + K+++SS    +I   +  E+A  +   + +L  +L  +L  + 
Sbjct: 118 LKDICFELLGVG---LSKAQQSSDWAAEILSPEQLEYAASDVLYLHRLRDVLSGRLARDG 174


>gi|242211748|ref|XP_002471711.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729267|gb|EED83145.1| predicted protein [Postia placenta Mad-698-R]
          Length = 642

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 67/185 (36%), Gaps = 23/185 (12%)

Query: 99  RLATQAFGIPAIEIQG-FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           +    A GIP ++  G FEA+ + +         G+A  + S D D++   +P       
Sbjct: 443 KEILSAMGIPCLDSTGPFEAEALASALVL----NGYADYVASEDTDVLVYDAPLIRNITN 498

Query: 158 VKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
            K     I    V +   +     V    + G   D    I  +G   A   ++EYG++E
Sbjct: 499 RKGPLVVISGTDVREHLRLDRSSFVDFALMLG--TDFSQRIKNVGPARALKFIREYGSIE 556

Query: 216 NILIN----ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
            ++        RI  KK       Y     L+R +    + +P T  +E L     N   
Sbjct: 557 RVIECERQYPPRIPPKK-------YLAQVSLARMV---FSTLPPTPDVELLRPGAYNEEE 606

Query: 272 LISFL 276
           +   L
Sbjct: 607 VTRLL 611


>gi|260577298|ref|ZP_05845271.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
 gi|259020479|gb|EEW23802.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
          Length = 204

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 75/210 (35%), Gaps = 25/210 (11%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
                L      +    T  +D    +   + +S+ D                + H  Q 
Sbjct: 9   DLPAGLNLGPVVAIDTETMGLDPRRDRLCLVQLSSGDG---------------NAHLVQI 53

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLD 497
           + G+ +        L+K   +   LK+ H  ++D   +   +G+         + + ++ 
Sbjct: 54  ARGQTSAPN-----LEKLLTDPSVLKLFHFGRFDIAAMKAAFGVVTAPVWCTKIAAKLVR 108

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           +    H +  + Q+ +     ++ K +++S    +      +++A  +   + +L   L 
Sbjct: 109 TFTDRHGLKYLLQELVGV---DVSKQQQTSDWGSETLSDAQKDYAASDVLYLHRLMAELE 165

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
             LI E  L + +R     +   +++++ G
Sbjct: 166 RCLIRENRLALAQRC-FDFLPTRAELDLMG 194


>gi|330808098|ref|YP_004352560.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376206|gb|AEA67556.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 377

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + Q+  + + +   +       +D F+  PIA  +   D K           
Sbjct: 6   HWIRDNDSLGQFCAEWQQLPFVALDTEFMRVDTFY--PIAGLLQIGDGKRAYLI------ 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + LT +    L    EN   LK+ H    D  VL R  G       
Sbjct: 58  --------------DPLTIDNWQPLAALLENPAVLKVLHACSEDLEVLLRLTGSLPAPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     E+ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLGI---ELPKGETRSDWLQRPLSETQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + ++++LLRPKL  EK   V E 
Sbjct: 160 HLAEVFVLLRPKLSDEKYRWVLED 183


>gi|324514356|gb|ADY45841.1| Flap endonuclease 1-B [Ascaris suum]
          Length = 320

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 19/190 (10%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI-----AEKEGFAVTIISTDKDLMQ 146
             Q    +   +  G+P  +    EA+   A          A  E        + + L Q
Sbjct: 71  KDQNEEAKKLLRLMGVPVFDAPC-EAEAQCAELVRAGKVFAAATEDMDALAFGSKRLLRQ 129

Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206
           L +           ++I++E V+K + +   + V L  L G   D    I GIG K A  
Sbjct: 130 LTASEAKKLPV---KEINLEQVLKDFEMDMPQFVDLCILLG--CDYTKTIRGIGPKKAFE 184

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L+Q++  +EN+L N    K           A    +  ++     D+       +L    
Sbjct: 185 LIQKHKTIENVLENIDTEKYPVPENWQFREARRLFMKPEI-TNCEDI-------NLQWGK 236

Query: 267 CNGPRLISFL 276
            +   ++ +L
Sbjct: 237 PDTEEIVRYL 246


>gi|312262734|gb|ADQ53029.1| RNaseH ribonuclease [Aeromonas phage PX29]
          Length = 300

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 19/200 (9%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
             + L   + N ++E      AV        +R + Y  YK +R K  +        +  
Sbjct: 41  VLSSLKYNVLNRKQEYPNIIIAVDNSADGGYWRRQKYYFYKKHREKDRDSSDWDWEGIFD 100

Query: 101 AT--------QAFGIPAIEIQGFEADDIIATYTYIAEKE--GFAVTIISTDKDLMQL-VS 149
           A                + +   EADDII       +++     V I+S+D D+ Q    
Sbjct: 101 AIKTVAYELRDNLPYKTLILPHTEADDIIGVLCKYLDEKFPDAPVLIVSSDGDMTQTQRF 160

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                +   +++ +  +           K +  + + GD  D I  I          L  
Sbjct: 161 KNVRQWSPGQKKWVKPKEG------TWRKDLITKIIKGDGGDGIANIKSRSDYILTKLDG 214

Query: 210 EYG-NLEN-ILINASRIKQK 227
           E   ++ + +L  A  +K  
Sbjct: 215 ERQKSISSKLLAQAFELKDP 234


>gi|317376210|sp|C4JDR3|FEN1_UNCRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 395

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 20/189 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   SP    + T
Sbjct: 141 CKKLLKLMGIPYINAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++  G+  +  V L  L G   D +  IP +G  TA  L++++
Sbjct: 196 FSEQRKEPILEIHLDRVLEGLGMDRKTFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 253

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           G+LE ++         K++  I +    E A   R L       P   P      E  + 
Sbjct: 254 GSLEKVVEAMKN--DPKQKYTIPDDWPYEQA---RDLFFEPDVRPADHPECDFKWEAPDV 308

Query: 270 PRLISFLKA 278
             L+ FL  
Sbjct: 309 EGLVKFLVE 317


>gi|123969324|ref|YP_001010182.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601]
 gi|123199434|gb|ABM71075.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601]
          Length = 211

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK   E++   KI H  ++D   L     I+ +      + S +  +  + H +  +  +
Sbjct: 72  LKALLEDDKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLINE 131

Query: 512 WLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            L     E+ KS +SS    ++       ++A  +   +++  L L+  L  E    + +
Sbjct: 132 LLGI---ELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMLKLKVILKRENRYELAQ 188

Query: 571 RL 572
           + 
Sbjct: 189 KC 190


>gi|118596592|dbj|BAF37955.1| putative flap endonuclease-1 [Sulfolobus sp. NO82]
          Length = 304

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 24/189 (12%)

Query: 99  RLATQAFGIPAIEIQG---FEADDI-IATYTYIAEKEGFAVTIISTDK--DLMQLVS--- 149
           +   +A GIP ++       EA  I I   ++    + +   +    +    + L     
Sbjct: 91  KELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLVRNLTLSGKRK 150

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+++ ++KK G+  E+++ +  + G   D  P GI G G KTA  +
Sbjct: 151 LPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVG--TDYNPDGIKGYGVKTAYRI 208

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           +++YG+LE  +     I + K   N+ E   +  L+ ++V  +         E+L L DC
Sbjct: 209 IKKYGSLEKAIEK-GEIPKIKVNFNVEEIR-SLFLNPQVVEPK---------ENLELADC 257

Query: 268 NGPRLISFL 276
           +  +++  L
Sbjct: 258 DDNKILDIL 266


>gi|238881502|gb|EEQ45140.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 990

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 79/220 (35%), Gaps = 28/220 (12%)

Query: 75  EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
           E +   K +  ++ E ++     V+   + FGIP I     EA+   A    I   +G  
Sbjct: 713 EKFQKAKRDSDEVTEAMIND---VQELLKRFGIPYITAP-MEAEAQCAELYKIGLVDG-- 766

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
             I++ D D               ++   E    + +  K  +   K++ L  L G   D
Sbjct: 767 --IVTDDSDCFLFGGDKIYKNMFDQKQYVEFYLQDDLFNKMALTQHKLIELALLLG--SD 822

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILIN--------ASRIKQKKRRENILEYAETARLS 243
              GI GIG   A  +L E+GNLE             A + +  K ++++L+  +  +L 
Sbjct: 823 YTEGIKGIGPVQAMEILAEFGNLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLY 882

Query: 244 -------RKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                  + +        +            +  ++ SFL
Sbjct: 883 LPDSFPDKVVEQAYISPEVDSDKTEFQWGVPDLDQIRSFL 922


>gi|119513593|ref|ZP_01632605.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
 gi|119461746|gb|EAW42771.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
          Length = 189

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
              + +    T  +     +   + +   + K                   + + G+   
Sbjct: 3   ASDAIAVDTETMGLLPQRDRLCLVQLCNPEGKVTA---------------IRIAKGQTEA 47

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHD 504
                  LK   E  + +KI H  ++D   L H  GI ++      + S +  +  + H 
Sbjct: 48  PN-----LKILMEAVNVVKIFHFARFDIATLRHNLGIQVQPVFCTKIASKLARTYTNRHG 102

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVE 563
           +  + Q+ L +   E+ KS +SS   +  + S+ Q  +A  +   ++ +   L   L  E
Sbjct: 103 LKEVVQE-LEHI--ELDKSSQSSDWGNAANLSEAQLNYAANDVRYLISVRQKLMEMLQRE 159

Query: 564 KLLHVYERL 572
           +   + +  
Sbjct: 160 ERWEIAQEC 168


>gi|17988111|ref|NP_540745.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
 gi|62289101|ref|YP_220894.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699039|ref|YP_413613.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148559185|ref|YP_001258158.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189023376|ref|YP_001934144.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225626663|ref|ZP_03784702.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225851660|ref|YP_002731893.1| hypothetical protein BMEA_A0127 [Brucella melitensis ATCC 23457]
 gi|237814593|ref|ZP_04593591.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|254690430|ref|ZP_05153684.1| hypothetical protein Babob68_09714 [Brucella abortus bv. 6 str.
           870]
 gi|254694918|ref|ZP_05156746.1| hypothetical protein Babob3T_09702 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696124|ref|ZP_05157952.1| hypothetical protein Babob28_00020 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700933|ref|ZP_05162761.1| hypothetical protein Bsuib55_08749 [Brucella suis bv. 5 str. 513]
 gi|254707182|ref|ZP_05169010.1| hypothetical protein BpinM_09468 [Brucella pinnipedialis
           M163/99/10]
 gi|254709273|ref|ZP_05171084.1| hypothetical protein BpinB_03206 [Brucella pinnipedialis B2/94]
 gi|254713304|ref|ZP_05175115.1| hypothetical protein BcetM6_08117 [Brucella ceti M644/93/1]
 gi|254716342|ref|ZP_05178153.1| hypothetical protein BcetM_07890 [Brucella ceti M13/05/1]
 gi|254731461|ref|ZP_05190039.1| hypothetical protein Babob42_09744 [Brucella abortus bv. 4 str.
           292]
 gi|256030796|ref|ZP_05444410.1| hypothetical protein BpinM2_09123 [Brucella pinnipedialis
           M292/94/1]
 gi|256045912|ref|ZP_05448786.1| hypothetical protein Bmelb1R_15494 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060264|ref|ZP_05450439.1| hypothetical protein Bneo5_07870 [Brucella neotomae 5K33]
 gi|256112626|ref|ZP_05453547.1| hypothetical protein Bmelb3E_08085 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256158817|ref|ZP_05456678.1| hypothetical protein BcetM4_08038 [Brucella ceti M490/95/1]
 gi|256254202|ref|ZP_05459738.1| hypothetical protein BcetB_07895 [Brucella ceti B1/94]
 gi|256258682|ref|ZP_05464218.1| hypothetical protein Babob9C_15316 [Brucella abortus bv. 9 str.
           C68]
 gi|256264829|ref|ZP_05467361.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|256368584|ref|YP_003106090.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260169700|ref|ZP_05756511.1| 3'-5' exonuclease family protein [Brucella sp. F5/99]
 gi|260546398|ref|ZP_05822138.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260563197|ref|ZP_05833683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260755977|ref|ZP_05868325.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260759201|ref|ZP_05871549.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260760489|ref|ZP_05872835.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884998|ref|ZP_05896612.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|261215252|ref|ZP_05929533.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|261218123|ref|ZP_05932404.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261221350|ref|ZP_05935631.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|261314663|ref|ZP_05953860.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261316779|ref|ZP_05955976.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261321030|ref|ZP_05960227.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261324237|ref|ZP_05963434.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261751448|ref|ZP_05995157.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|261759236|ref|ZP_06002945.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|265987850|ref|ZP_06100407.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|265992324|ref|ZP_06104881.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994066|ref|ZP_06106623.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|265997310|ref|ZP_06109867.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|294851524|ref|ZP_06792197.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297247517|ref|ZP_06931235.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306842591|ref|ZP_07475240.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|17983864|gb|AAL53009.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
 gi|62195233|gb|AAX73533.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615140|emb|CAJ10073.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148370442|gb|ABQ60421.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189018948|gb|ACD71670.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225618320|gb|EEH15363.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225640025|gb|ACN99938.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789430|gb|EEP63640.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|255998742|gb|ACU47141.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260096505|gb|EEW80381.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260153213|gb|EEW88305.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260669519|gb|EEX56459.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260670924|gb|EEX57745.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676085|gb|EEX62906.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260874526|gb|EEX81595.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|260916859|gb|EEX83720.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|260919934|gb|EEX86587.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|260923212|gb|EEX89780.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261293720|gb|EEX97216.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261296002|gb|EEX99498.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261300217|gb|EEY03714.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261303689|gb|EEY07186.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261739220|gb|EEY27216.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|261741201|gb|EEY29127.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|262551778|gb|EEZ07768.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|262765047|gb|EEZ10968.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|263003390|gb|EEZ15683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095285|gb|EEZ18912.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|264660047|gb|EEZ30308.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|294820113|gb|EFG37112.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297174686|gb|EFH34033.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306287236|gb|EFM58724.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|326408140|gb|ADZ65205.1| 3'-5' exonuclease [Brucella melitensis M28]
 gi|326537851|gb|ADZ86066.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 205

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 24/180 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            + + +    T  ++    +   + IS  D   D                 Q   G+   
Sbjct: 17  QVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADV---------------IQIEAGQKKA 61

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L K  ++    KI H  ++D  VL   +G   +      + S +  +    H 
Sbjct: 62  PN-----LVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHG 116

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  I  + L  +   I K ++SS    ++      E+A  +   + +L  +L  +L  + 
Sbjct: 117 LKEICSELLDVS---ISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDG 173


>gi|332376861|gb|AEE63570.1| unknown [Dendroctonus ponderosae]
          Length = 380

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 88/279 (31%), Gaps = 52/279 (18%)

Query: 28  RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAV-------TFRNEIYPD 79
              DG P + + G F   +  L    +          +FD             R E   +
Sbjct: 54  TTADGEPTSHLVGTFYRTIRLLEHGIKPVY-------VFDGKPPEMKGGELNKRMEKRAE 106

Query: 80  Y-KANRPKIPEMLLPQLPLV---------------RLATQAFGIPAIEIQGFEADDIIAT 123
             KA    +      ++                  +   +  G+P IE    EA+   A 
Sbjct: 107 AQKALDKAMEAGDQAEVDKFNRRLVKVTRHHADEAKELLRLMGVPYIEAPC-EAEAQCAA 165

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
                   G      + D D +   S     + T  E      ++I ++ V+++  +   
Sbjct: 166 MVK----AGKIYATATEDMDALTFGSDIVLRHLTFSEARKMPIQEIHLKIVLQELNLSQT 221

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + +    L G   D    I GIG K +  L++ + ++E IL N  + K     +   E A
Sbjct: 222 EFIDFCILMG--CDYTDSIRGIGPKKSIELIKNHRSIEKILENIDKSKYPPPEDWNYEGA 279

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                    V      P +I    L   + +   ++ FL
Sbjct: 280 RGLF-----VKPEISDPDSI---ELKWGEPDEEGMVKFL 310


>gi|320580410|gb|EFW94633.1| Single-stranded DNA endonuclease [Pichia angusta DL-1]
          Length = 1011

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 29/199 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           ++     FG+P I     EA+   A    +   +G    II+ D D           Y  
Sbjct: 733 IQDMLSRFGLPYITAP-MEAEAQCAELLRLGLVDG----IITDDSDCFLFGGDRV--YKN 785

Query: 158 VKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
           +  EK       +E + +  G+    ++ L  L G   D   GI G+G   A  +L E+G
Sbjct: 786 MFNEKNFVECYQMEDLERDLGLDRRMLIDLALLLG--SDYTEGIKGVGKVAAMEILAEFG 843

Query: 213 NLENI------LIN--ASRIKQKKRRENILEYAETARLS-------RKLVMLRTDVPITI 257
            LE+         N      K+   +  + +  +   L        ++++       +  
Sbjct: 844 TLESFKHWWLDYQNGIIDESKETTVKRKLRKSLKKTDLYLTPEFPDKRVIEAYLHPEVDH 903

Query: 258 PLEHLILEDCNGPRLISFL 276
                     N  +L +FL
Sbjct: 904 DKSEFQWGYPNLDKLRTFL 922


>gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
 gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
          Length = 382

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 79/204 (38%), Gaps = 28/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +    + +    +  +  D++  +  K   I IST               
Sbjct: 12  EMITDGGRLAEVAGSINSEREVAVDLEMDSLHHYREKVCLIQISTRT------------- 58

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
                    +S   + L  + LS L     N   L + H   YD   LHR +GI +    
Sbjct: 59  ---------ESWLIDPLALKDLSPLAAPLGNRDILIVMHGADYDIRSLHRDHGIEVTNLF 109

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D M+ S +L  G +   +A++ +        E+ K  + +    +    +++ +A+ ++ 
Sbjct: 110 DTMIASRLL--GITEFGLAALLKARFGI---ELNKKYQKADWSKRPLSPEMRAYAVADTA 164

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            +L+L+ +LR +L+ +  L   E 
Sbjct: 165 DLLRLYDMLRDELLEKGRLAWLEE 188


>gi|325186427|emb|CCA20932.1| flap endonuclease 1 putative [Albugo laibachii Nc14]
          Length = 389

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 88/282 (31%), Gaps = 50/282 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
              DG   + + G   M  + ++         +   +FD      +++     K  R   
Sbjct: 59  TNQDGEDTSHLQG---MFSRTIRLMENGIKPVY---VFDGKPPVMKSKELEKRKDRRTAA 112

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +   +  G+P +     EA+   AT 
Sbjct: 113 NKSLEEATEAGNLVEIDRFSKRLVHATSQHSQDCKELLRLMGVPVLTAPC-EAEATCATL 171

Query: 125 TYIAEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPE 177
                     V    + D D++   +P      TV   K      I +E  +K   +  +
Sbjct: 172 AK-----HHKVYASGTEDMDVLTFGTPVLYRRMTVAANKKVPILEIKLEQALKALDLTEQ 226

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA--SRIKQKKRRENILE 235
           + V L  L G   D    I GIG K A   ++E+  +EN L +   S  K     E   E
Sbjct: 227 QFVDLCILCG--CDYCDSIRGIGPKKAFNGIKEHKTIENFLQHLQQSNNKGVVIPE---E 281

Query: 236 YAETARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFL 276
           +     + ++   +  +   + +    L  ++     L  FL
Sbjct: 282 WLGDDPIYKRAREMFVNAEVVDVNEVDLKWKEPLADELSRFL 323


>gi|109947658|ref|YP_664886.1| putative DNA polymerase I [Helicobacter acinonychis str. Sheeba]
 gi|109714879|emb|CAJ99887.1| putative DNA polymerase I [Helicobacter acinonychis str. Sheeba]
          Length = 274

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E         +   +   I  +E                
Sbjct: 61  GRESFRYQLCDYYKQKRHQFDENF-------KALLKTLKIAIVEKYPFKKGAKIQGEHCF 113

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     +      I S DKD+  L S     +        ++     ++ 
Sbjct: 114 EYEADDIISFYKKKNPEN---YVIASMDKDI--LYSNRGSHFSLKTNAFFNVSKKEAQF- 167

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GI        L E+     +      I+  K +E++
Sbjct: 168 -----FAYYQCIVGDKGDNIRGVRGISDSNYKEFLNEHAKEHELWEQI--IQAFKIKEDL 220

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 221 SDSEAKEKALLNMRLVNMH 239


>gi|268564494|ref|XP_002639126.1| C. briggsae CBR-CRN-1 protein [Caenorhabditis briggsae]
 gi|317374879|sp|A8XL25|FEN1_CAEBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
           death-related nuclease 1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|187027579|emb|CAP33349.1| CBR-CRN-1 protein [Caenorhabditis briggsae AF16]
          Length = 382

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 93/279 (33%), Gaps = 50/279 (17%)

Query: 27  SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP----------AVTFRN-- 74
            +  DG   + + G   M ++ ++         +   +FD              T R   
Sbjct: 53  MQSEDGETTSHLMG---MFYRTIRMIDNGIKPVY---VFDGKPPDMKSGELEKRTERRAE 106

Query: 75  --EIYPDYKA-NRPKIPEML--------LPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
             +   + K     K  E            Q   V+      GIP +E    EA+   A 
Sbjct: 107 AEKALTEAKEKGDAKEAEKFERRLVKVTKQQNEEVKQLLGLMGIPVVEAPC-EAEAQCAN 165

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
                +  G A    + D D +   S     +    E      ++  +  V+++  +  +
Sbjct: 166 LVKAGKVYGTA----TEDMDALTFGSCVLLRHLLAPEAKKIPIKEFHLARVLEEMQLTKD 221

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L  L G   D    I GIG K A  L++++ N+E +L N  + K     +      
Sbjct: 222 QFIDLCILLG--CDYCGTIRGIGPKKAVELIKQHKNIETVLENIDQTKYPPPADWPY--- 276

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
              + +R+L        +      L  +D +   ++ F+
Sbjct: 277 ---KRAREL--FHEPEVMKCDEVELTWKDPDVEGIVKFM 310


>gi|296282123|ref|ZP_06860121.1| 3'-5' exonuclease [Citromicrobium bathyomarinum JL354]
          Length = 205

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 74/215 (34%), Gaps = 24/215 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
             +   + +   G+ +    T  +     +   + IS  D K D         +   V +
Sbjct: 6   HEEDLPEGVLAEGAVAVDTETMGLITRRDRLCLVQIS--DGKGDEHL------VRFGVDS 57

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY 494
           S D+             LK    +    K+ H  ++D   + +  G++        + S 
Sbjct: 58  SFDAPN-----------LKAVLADPARTKLYHFGRFDLAAIEYWLGVTAAPVFCTKIASK 106

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +  +    H +  +  + L    ++I K ++SS       +   +E+A  +   + +L  
Sbjct: 107 LTRTYTDRHGLKMLVSELLG---EDISKQQQSSDWGAPKINDAQREYAASDVRYLHRLRD 163

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +   +L  E    + +      +   ++++I G  
Sbjct: 164 IFEERLAREGRTEIAQAC-FDFLPTRARLDIIGWP 197


>gi|229579856|ref|YP_002838255.1| flap endonuclease-1 [Sulfolobus islandicus Y.G.57.14]
 gi|238620410|ref|YP_002915236.1| flap endonuclease-1 [Sulfolobus islandicus M.16.4]
 gi|284998466|ref|YP_003420234.1| Xpg I [Sulfolobus islandicus L.D.8.5]
 gi|304372803|ref|YP_003858299.1| flap-1 endonuclease [Sulfolobus islandicus L.S.2.15]
 gi|228010571|gb|ACP46333.1| XPG I domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|238381480|gb|ACR42568.1| XPG I domain protein [Sulfolobus islandicus M.16.4]
 gi|284446362|gb|ADB87864.1| Xpg I [Sulfolobus islandicus L.D.8.5]
 gi|323475286|gb|ADX85892.1| XPG I domain protein [Sulfolobus islandicus REY15A]
          Length = 302

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 15/174 (8%)

Query: 99  RLATQAFGIPAI----EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----- 149
           +   +A GIP +    E +   A   I  +++ A  + +   +    + +  L       
Sbjct: 89  KNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNLTITGKRK 148

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+ E ++KK GI  E+++ +  L G   D  P GI GIG + A  +
Sbjct: 149 LPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIG--TDYNPDGIKGIGPERALKI 206

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           +++YG +E  +     I ++    NI E   +  L  ++V     + +  P E 
Sbjct: 207 IKKYGKIEKAIE-YGEISKRDITFNIDEIR-SLFLKPQVVKPEETLDLNEPNEK 258


>gi|159904246|ref|YP_001551590.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211]
 gi|159889422|gb|ABX09636.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211]
          Length = 214

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK   EN    KI H  ++D   L     I +       + S +  +    H +  +  +
Sbjct: 75  LKNLLENPSIQKIFHFARFDVAALEVNLDIKVTPIFCTKVASKIGRTYSPRHGLKEVVME 134

Query: 512 WLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            ++    E+ K  +SS    ++ +S  Q+  +A  +   +++    L   L  E    + 
Sbjct: 135 LVNV---ELDKQAQSSDWGAVEDLSAKQLA-YAANDVRYLIKAKEKLEHMLKREGRWELT 190

Query: 570 ERLDKPMIDVVSQMEI 585
            +     I V+S+++I
Sbjct: 191 TKC-FQCIPVMSELDI 205


>gi|328462327|gb|EGF34407.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 70

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           E    EH+ +  G+ P + + ++AL GD+ DN PG+  +G K A+ L+Q
Sbjct: 8   EAYTPEHMKEVNGVTPTEFIDMKALMGDNSDNYPGVTKVGPKIASRLIQ 56


>gi|227828219|ref|YP_002829999.1| flap endonuclease-1 [Sulfolobus islandicus M.14.25]
 gi|227460015|gb|ACP38701.1| XPG I domain protein [Sulfolobus islandicus M.14.25]
          Length = 302

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 15/174 (8%)

Query: 99  RLATQAFGIPAI----EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----- 149
           +   +A GIP +    E +   A   I  +++ A  + +   +    + +  L       
Sbjct: 89  KNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNLTITGKRK 148

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+ E ++KK GI  E+++ +  L G   D  P GI GIG + A  +
Sbjct: 149 LPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIG--TDYNPDGIKGIGPERALKI 206

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           +++YG +E  +     I ++    NI E   +  L  ++V     + +  P + 
Sbjct: 207 IKKYGKIEKAIE-YGEISKRDITFNIDEIR-SLFLKPQVVKPEETLDLNEPNDK 258


>gi|116283963|gb|AAH61472.1| Polg protein [Mus musculus]
          Length = 1013

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 29/171 (16%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                +      A T+T R         +      +G +++    +PP   L+ AD    
Sbjct: 813 GHYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQ 872

Query: 754 ELRIL-----AHIAKITPLYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
           EL I      AH A +      F             D+H   AA +            R 
Sbjct: 873 ELWIAAVLGDAHFAGMHGCT-AFGWMTLQGRKSRGTDLHSKTAATV---------GISRE 922

Query: 800 HAKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYFHRFPGIHEY 845
           HAK  N+  IYG       RL  Q    + R EAA+  ++ +    G+  Y
Sbjct: 923 HAKIFNYGRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRY 973


>gi|77457615|ref|YP_347120.1| ribonuclease D [Pseudomonas fluorescens Pf0-1]
 gi|77381618|gb|ABA73131.1| putative ribonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 377

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + Q+  + + +   +       +D F+  PIA  +   D K           
Sbjct: 6   HWIRDNDSLAQFCAEWQQLPFVALDTEFMRVDTFY--PIAGLLQVGDGKRAYLI------ 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + LT      L    EN   LK+ H    D  VL R  G       
Sbjct: 58  --------------DPLTINAWQPLAALLENPAVLKVLHACSEDLEVLLRLTGSLPAPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     E+ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLGI---ELPKGETRSDWLQRPLSDTQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + ++++ LRPKL  +K   V E 
Sbjct: 160 HLAEVFVQLRPKLSDDKFAWVLED 183


>gi|116754923|ref|YP_844041.1| flap endonuclease-1 [Methanosaeta thermophila PT]
 gi|121693591|sp|A0B9M7|FEN_METTP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|116666374|gb|ABK15401.1| flap endonuclease 1 [Methanosaeta thermophila PT]
          Length = 336

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 111/345 (32%), Gaps = 91/345 (26%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKESIASHF 61
           VDG + +Y+       + R+ DG P         + ++G    +  L++      +    
Sbjct: 26  VDGFNTLYQ----FLSIIRQPDGTPLMDASGRVTSHLSGLLYRMTNLIE------VGIRV 75

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ----------------------LPLVR 99
           A +FD        E+     A R ++ E    Q                        ++ 
Sbjct: 76  AFVFDGTPP----ELKAGTLAARAQMKEAAEIQLQEAIATGVDSFRYAQATARINSEILH 131

Query: 100 L---ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-- 154
                  A GIP ++    E +   A      + +     + S D D +   +P      
Sbjct: 132 DSIRLLDAMGIPYVQAPS-EGEAQAAFMAIRGDVD----YVASQDYDSLLFGAPRVVRNL 186

Query: 155 ------YDTVKEEKIDI-------EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
                     K   ID+       E  + + GI  E+++ +  + G   D   G+P +G 
Sbjct: 187 AITGRRKMPRKNIYIDVPPEVIILEEELTRLGISREQLIDIGIMCG--TDYNRGLPKVGP 244

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           K A  L++E+G LE +L            E+I  + E     R+L +     P       
Sbjct: 245 KRALKLIREHGCLEAVLDAL--------GESIENFREI----RELFLH----PAVTESYE 288

Query: 262 LILEDCNGPRLISF------LKALEFTKLINRVATTYDCDAANIE 300
           L +       ++ F             K   R+  +Y    + +E
Sbjct: 289 LRMRKPMVDEIVGFLCNERNFSEDRVRKAAERLNASYRSGQSTLE 333


>gi|317140876|ref|XP_001818459.2| single-stranded DNA endonuclease [Aspergillus oryzae RIB40]
          Length = 1135

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 100/306 (32%), Gaps = 32/306 (10%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +     FG+P I     EA+   A    +   +G    II+ 
Sbjct: 793  KKDRRDADEVSQIMISECQQLLTLFGLPYITAP-MEAEAQCAELVALGLVDG----IITD 847

Query: 141  DKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D+              + + ++      + K++ +   K++    L G   D   GIP
Sbjct: 848  DSDIFLFGGTRVYKNMFNQGKFVECYLTSDLEKEYALHRRKLISFAHLLG--SDYTEGIP 905

Query: 198  GIGYKTAALLLQEYGNLENILI---------NASRIKQKKRRENILEYAETARLSR---- 244
            GIG  TA  +L E+ NLE             N S  +     +   + A    LS     
Sbjct: 906  GIGPVTALEILTEFSNLEEFRDWWTQVQMGMNLSDGEHAAFYKKFRKQASKIFLSPSFPN 965

Query: 245  -KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
             ++ +   +  +            +   L +F        L+  +  + +     + PV+
Sbjct: 966  SQVDVAYLEPEVDSDPSPFQWGVPDLHGLRNF--------LMATIGWSQERTDEVLVPVI 1017

Query: 304  LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
             D+N  E +G                 F+       +   E+   +L  E   +  Q   
Sbjct: 1018 RDMNRREQEGTQSNITAFFQGPQGAGAFAPRVRSGGQSRMEKAFSRLRQEAGSEAVQSAQ 1077

Query: 364  NNDSYT 369
            +  + T
Sbjct: 1078 STGAET 1083


>gi|293334443|ref|NP_001170525.1| hypothetical protein LOC100384536 [Zea mays]
 gi|238005848|gb|ACR33959.1| unknown [Zea mays]
          Length = 666

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 97/266 (36%), Gaps = 31/266 (11%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +    + +  +T + + K + +  +KL+++   +  +                     
Sbjct: 139 EPVKPADLEDTPFTLVQDHKGLTELAKKLKSVTEFAVDLE-------------------- 178

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                SF+  T  + +S  T         L   I  YL++ F++    K+ H    D + 
Sbjct: 179 HNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMW 238

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R + I +    D    S VL   R+     S+    L +      K  +++    +  
Sbjct: 239 LQRDFHIYVCNLFDTGQASRVLQMERN-----SLEHLLLHFCGVTAKKEYQNADWRSRPL 293

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH--VYERLDKPMIDVVSQMEITGIQIDQ 592
             ++ ++A E+++ +L ++ L+R +L  E      +   + K   ++  Q     +  D 
Sbjct: 294 PDEMIKYAREDTHYLLYIYDLMRQRLQRESTFENDLLLEVHKRSNEICLQFYEKELLTDT 353

Query: 593 DLLKQ---VSAEISKNLLSLEENIYD 615
             L        E+    L++   +++
Sbjct: 354 SYLHIYGLQEHELDARQLAVVAALHE 379


>gi|311875218|emb|CBX44477.1| DNA polymerase A, part B [Erwinia phage phiEa1H]
 gi|311875339|emb|CBX45080.1| DNA polymerase A, part A [Erwinia phage phiEa100]
          Length = 217

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 67/224 (29%), Gaps = 63/224 (28%)

Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868
           +YG     LA    +   E      R+    P +   +   +    + GY++   G   H
Sbjct: 1   MYGSGDDNLAAVCGVSVKEMKAIRARFMAELPQLARLMAAVQASGNEYGYLQAPDG---H 57

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA------TKMLL 922
           +  I      +    E   +N  +Q + +   + A++     ++   +          L 
Sbjct: 58  WGRIRKKDGKL---LEHTMLNVLLQMTGSLCMKYALVRAVMVMKQEGVGLDENGHPAFLA 114

Query: 923 QIHDELVFEVPEEEITTAS----------------------------------------- 941
            IHDE+  EV  +E+   +                                         
Sbjct: 115 NIHDEMQMEVNADEVLETTYDLASSDWKEEEKKAYIDVDGRMWSAPEIIEGNPKTDPSIK 174

Query: 942 ---------QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
                    QII  +M  A    + +R+ +    K+ ++W + +
Sbjct: 175 VRRQYHRCGQIIAEAMTWAG-EYLKMRIRMDGEFKIGDSWGQTH 217


>gi|118589455|ref|ZP_01546861.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
 gi|118438155|gb|EAV44790.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
          Length = 206

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 66/202 (32%), Gaps = 24/202 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K     ++  ET  + +    T  ++    +   + +S  D              
Sbjct: 2   TIRYHKGDLPDLKAYETANAVAVDSETLGLNPHRDRLCVVQLSPGDG------------- 48

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFED 488
             S    Q + G++         L     +    KI H  ++D  VL  Y  I +     
Sbjct: 49  --SADVVQIARGQSEAPN-----LAALMTDTSKPKIFHFARFDVAVLQHYLNIRVSPVWC 101

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + S ++ +    H +  I ++ L     E+ K ++SS    +        +A  +   
Sbjct: 102 TKIASKLVRTYTDRHGLKDITRELLGV---ELSKQQQSSDWAAETLSDAQLAYAASDVLH 158

Query: 549 ILQLWLLLRPKLIVEKLLHVYE 570
           +  L   L   L  E+  H+ E
Sbjct: 159 LHALKERLEMMLEREERTHIAE 180


>gi|23501034|ref|NP_697161.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161618108|ref|YP_001591995.1| hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|254705301|ref|ZP_05167129.1| hypothetical protein Bsuib36_15553 [Brucella suis bv. 3 str. 686]
 gi|260567236|ref|ZP_05837706.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261756011|ref|ZP_05999720.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
 gi|23346898|gb|AAN29076.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161334919|gb|ABX61224.1| Hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|260156754|gb|EEW91834.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261745764|gb|EEY33690.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
          Length = 205

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 24/180 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            + + +    T  ++    +   + IS  D   D                      +   
Sbjct: 17  QVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVI--------------------QIEA 56

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
            ++    L K  ++    KI H  ++D  VL   +G   +      + S +  +    H 
Sbjct: 57  DQKKAPNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHG 116

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  I  + L  +   I K ++SS    ++      E+A  +   + +L  +L  +L  + 
Sbjct: 117 LKEICSELLDVS---ISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDG 173


>gi|163842395|ref|YP_001626799.1| hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
 gi|163673118|gb|ABY37229.1| Hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
          Length = 205

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 24/177 (13%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + +    T  ++    +   + IS  D   D                 Q   G+      
Sbjct: 20  AVAIDTETLGLNPHRDRLCVVQISPGDGTADV---------------IQIEAGQKKAPN- 63

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               L K  ++    KI H  ++D  VL   +G   +      + S +  +    H +  
Sbjct: 64  ----LVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKE 119

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           I  + L  +   I K ++SS    ++      E+A  +   + +L  +L  +L  + 
Sbjct: 120 ICSELLDVS---ISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDG 173


>gi|126738420|ref|ZP_01754125.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
 gi|126720219|gb|EBA16925.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
          Length = 204

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 74/214 (34%), Gaps = 25/214 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   I +S  D                + H  
Sbjct: 7   QNDLPDDLKLGPVVAIDCETMGLNPHRDRLCVIQMSDGDG---------------NAHII 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q + G++         L +  E+   LK+ H  ++D   ++  +G          + S +
Sbjct: 52  QVAKGQSEAPN-----LCRLLEDPETLKLFHFGRFDIAAMYNAFGALSAPVYCTKIASRL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H + ++ Q+ L     +I K ++ S    +I      ++A  +   + +L   
Sbjct: 107 VRTYTDRHGLKNLTQELLGI---DISKQQQMSDWGAEILTDAQLDYAASDVLHLHKLRKA 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           L  +L  E    + +      + + +++++ G  
Sbjct: 164 LNKRLEREGRTEMAQAC-FDFLPMRAKLDLAGWP 196


>gi|123967004|ref|YP_001012085.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515]
 gi|123201370|gb|ABM72978.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515]
          Length = 213

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 27/206 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            + N    Q      +     +       +     +   I IS       +  K+E    
Sbjct: 11  TLYNNDITQNLYNIYKDSSYLAVDTEAMGLIHGRDRLCLIQISNEFHL-TSCIKIELNNS 69

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
           D                      +KK FE+   +KI H  ++D   L     I+      
Sbjct: 70  DSPH-------------------IKKLFEDNKIMKIFHYARFDVAALKCNLNINTNNIFC 110

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENS 546
             + S +  +    H +  +  + +     E+ KS +SS     + +SD Q+ ++A  + 
Sbjct: 111 TKIASKLARTYTHKHGLKELIHELIGI---ELDKSSQSSDWGSCEDLSDKQI-DYAANDV 166

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERL 572
             +++    LR  L  E    + ++ 
Sbjct: 167 KYLIEAMRKLRIILEREGRYDLAQKC 192


>gi|260941263|ref|XP_002614798.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
 gi|238851984|gb|EEQ41448.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
          Length = 340

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 25/195 (12%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             Q    +   +  GIP I     EA+   A         G      S D D +      
Sbjct: 100 REQNDEAKKLLELMGIPYIVAPS-EAEAQCAELAR----AGKVFAAASEDMDTLCYEPKY 154

Query: 152 TCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
              + TV E +      ID E ++K   +     V L  L G   D    I G+G  TA 
Sbjct: 155 LLRHLTVAEARKMPIDQIDYEAMLKGLDMDRSTFVDLCILLG--CDYCETIKGVGPVTAF 212

Query: 206 LLLQEYGNLENIL----INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
            L++E+G+L+NI+     N  + K K       + A+   ++ ++               
Sbjct: 213 KLIKEHGSLDNIVKWIQENPEKTKYKVPENWPYDEAKQLFMNPEITK--------GDEVD 264

Query: 262 LILEDCNGPRLISFL 276
           +   + N   L+ F+
Sbjct: 265 VKWNEPNVDGLVEFM 279


>gi|327401884|ref|YP_004342723.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
 gi|327317392|gb|AEA48008.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
          Length = 338

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 118/349 (33%), Gaps = 87/349 (24%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQ-NSRKESIASH 60
           +D  + +Y+       + R+ DG P         + ++G    +  +++   R       
Sbjct: 26  IDAFNTLYQ----FISIIRQPDGTPLKDSQGRMTSHLSGILYRVSNMIEVGMRP------ 75

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ------------------LPLV---- 98
              +FD     F+ +   + K  R +  E  +                       +    
Sbjct: 76  -IFVFDGEPPVFKQKEIEERKERRAEAEEKWIAAIERGEKYAKKYAQAAARVDEYIVESS 134

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS--------- 149
           +   +  G+P ++       +  A   Y+A K        +  +D   L+          
Sbjct: 135 KKLLEYMGVPWVQAP----SEGEAQAAYMAAKGDVD---FTGSQDYDSLLFGSPKLARNL 187

Query: 150 --------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
                   P   +Y  VK E ID+   +++ GI  E++V +  L G   D   G+ G+G 
Sbjct: 188 AITGKRKLPGKNVYVEVKPEIIDLNGNLRRLGITREQLVDIALLVG--TDYNEGVKGVGV 245

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           K A   ++ YG++   L        K  +ENI E                + P+T     
Sbjct: 246 KKAYKYIKTYGDVFKALKAL-----KVEQENIEEIRN----------FFLNPPVTNNY-S 289

Query: 262 LILEDCNGPRLISFL-KALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
           L     +  ++I FL +  +F+K  +RV    +   A ++     +   
Sbjct: 290 LHFGKPDDEKIIEFLCEEHDFSK--DRVEKAVEKLKAGMQASQSTLERW 336


>gi|110677766|ref|YP_680773.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453882|gb|ABG30087.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 248

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 24/188 (12%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 L+     +    T  +     +   + +S  D K                H  Q
Sbjct: 52  NDLPDGLDLGPMVAIDCETMGLHPHRDRLCVVQLSGGDGK---------------AHLIQ 96

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
            + G+          L K  E+   LK+ H  ++D   +   +G +        + S ++
Sbjct: 97  IAKGQTEAPN-----LCKLLEDPKVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLV 151

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H +A + Q+ L+    +I K ++SS    +       E+A  +   + QL   L
Sbjct: 152 RTYTDRHGLAKLLQELLAI---DISKQQQSSDWGAETLTDAQIEYAASDVLYLHQLREAL 208

Query: 557 RPKLIVEK 564
              L  E 
Sbjct: 209 NKMLEREG 216


>gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 209

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 61/203 (30%), Gaps = 25/203 (12%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            + +    T  ++    +   + IS  D   D           +                
Sbjct: 23  SAIAIDTETLGLNPHRDRLCVVQISRGDGSADVVQIRPGDPEPV---------------- 66

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                LK    +   LKI H  ++D  VL R  G+         + S +  +    H + 
Sbjct: 67  ----RLKAILADPGVLKIFHFARFDLAVLFRALGVMPAPVYCTKVASKLARTYTDRHGLK 122

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            + ++ +     ++ K ++SS    +       ++A  +   +      L   L  E   
Sbjct: 123 DVVRELVGV---DLSKQQQSSDWGAETLSQAQIDYAASDVLHLHAARERLDLMLAREGRS 179

Query: 567 HVYERLDKPMIDVVSQMEITGIQ 589
            +        +   +++++ G  
Sbjct: 180 EMARAC-FDFLPTRARLDLAGWP 201


>gi|323478011|gb|ADX83249.1| XPG I domain protein [Sulfolobus islandicus HVE10/4]
          Length = 302

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 15/174 (8%)

Query: 99  RLATQAFGIPAI----EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----- 149
           +   +A GIP +    E +   A   I  +++ A  + +   +    + +  L       
Sbjct: 89  KNLLRAMGIPIVQAPSEGEAEAAYLNIIGFSWAAASQDYDSILFGAKRLVRNLTITGKRK 148

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+ E ++KK GI  E+++ +  L G   D  P GI GIG + A  +
Sbjct: 149 LPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIG--TDYNPDGIKGIGPERALKI 206

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           +++YG +E  +     I ++    NI E   +  L  ++V     + +  P E 
Sbjct: 207 IKKYGKIEKAIE-YGEISKRDITFNIDEIR-SLFLKPQVVKPEETLDLNEPNEK 258


>gi|302789405|ref|XP_002976471.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii]
 gi|300156101|gb|EFJ22731.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii]
          Length = 328

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 32/203 (15%)

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
           A+AI    +  D +       + L+   +            ++   K   E+ H  K+ H
Sbjct: 40  ALAIGLDCEGVDLARHGRLCIMQLAFQDAIYLVDAVQGGDALMQACKPALESPHVTKVVH 99

Query: 468 NIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           + K D   L+ ++GI +    D  +   +++                       L+  + 
Sbjct: 100 DCKRDSEALYFQHGIKLNNVFDTQIAHSLIE-----------------------LQQGRQ 136

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            IP D IS   +   A     V       +R  L  +         +      ++ M   
Sbjct: 137 WIPDDCISFVDLLADAKYCVGVAYDEKDEVRSLLRKD--------PEFWTHRPLTNMMKR 188

Query: 587 GIQIDQDLLKQVSAEISKNLLSL 609
               D   L ++   + + L + 
Sbjct: 189 AAADDVRFLLRIHRNMVQRLDAF 211


>gi|310831000|ref|YP_003969643.1| putative RNaseH [Cafeteria roenbergensis virus BV-PW1]
 gi|309386184|gb|ADO67044.1| putative RNaseH [Cafeteria roenbergensis virus BV-PW1]
          Length = 287

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 42/205 (20%)

Query: 61  FAVIFDYPAVT-FRNEIYPD------YKANRPKIPEMLLPQL-----------PLVRLAT 102
                D P  T +R+++         YK  RP     L  +             ++  A 
Sbjct: 74  VIFCEDAPQETLWRHKLIKSKHLQDQYKGERP----DLKSKYNFKNVFDYTYKKMIPNAK 129

Query: 103 QA--FGIPAIEIQGFEADDIIATYTYIAEKEGF--AVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + I  +++   EADDIIA+     +K  F   + I+S D D  QL      + +  
Sbjct: 130 KEKPYPIHQLKLPETEADDIIASICIYMKKHNFNEEIIIVSGDDDFTQLGRENVSILNYH 189

Query: 159 KEE--KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK----TAALLLQEYG 212
           K++  K D E    K        + L+ + GD  DNIP I     K        L++E  
Sbjct: 190 KKKLIKFDNEECEDK--------LRLKIINGDKSDNIPSIFPKSRKEVSLKTRKLVKESI 241

Query: 213 N-LENILINASRIKQK-KRRENILE 235
           + +     N   IK K K  E +++
Sbjct: 242 SAMNEFFENNPEIKSKFKLNEKLID 266


>gi|229581484|ref|YP_002839883.1| flap endonuclease-1 [Sulfolobus islandicus Y.N.15.51]
 gi|228012200|gb|ACP47961.1| XPG I domain protein [Sulfolobus islandicus Y.N.15.51]
          Length = 302

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 15/174 (8%)

Query: 99  RLATQAFGIPAI----EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS----- 149
           +   +A GIP +    E +   A   I  +++ A  + +   +    + +  L       
Sbjct: 89  KNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSILFGAKRLVRNLTITGKRK 148

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+ E ++KK GI  E+++ +  L G   D  P GI GIG + A  +
Sbjct: 149 LPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIG--TDYNPDGIKGIGPERALKI 206

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           +++YG +E  +     I ++    NI E   +  L  ++V     + +  P E 
Sbjct: 207 IKKYGKIEKAIE-YGEISKRDITFNIDEIR-SLFLKPQIVKPEETLDLNEPNEK 258


>gi|68486229|ref|XP_709963.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
 gi|68486286|ref|XP_713000.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
 gi|46434429|gb|EAK93839.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
 gi|46434462|gb|EAK93871.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
          Length = 990

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 25/197 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+   + FGIP I     EA+   A    I   +G    I++ D D              
Sbjct: 733 VQELLKRFGIPYITAP-MEAEAQCAELYKIGLVDG----IVTDDSDCFLFGGDKIYKNMF 787

Query: 158 VKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            ++   E    + +  K  +   K++ L  L G   D   GI GIG   A  +L E+GNL
Sbjct: 788 DQKQYVEFYLQDDLFNKMALTQHKLIELALLLG--SDYTEGIKGIGPVQAMEILAEFGNL 845

Query: 215 ENILIN--------ASRIKQKKRRENILEYAETARLS-------RKLVMLRTDVPITIPL 259
           E             A + +  K ++++L+  +  +L        + +        +    
Sbjct: 846 EKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDSFPDKVVEQAYMSPEVDSDK 905

Query: 260 EHLILEDCNGPRLISFL 276
                   +  ++ SFL
Sbjct: 906 TEFQWGVPDLDQIRSFL 922


>gi|317374928|sp|C4YBJ8|FEN1_CLAL4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 376

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 25/195 (12%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             Q    +   +  GIP I     EA+   A         G      S D D +      
Sbjct: 136 REQNDEAKKLLELMGIPYIVAPS-EAEAQCAELAR----AGKVFAAASEDMDTLCYEPKY 190

Query: 152 TCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
              + TV E +      ID E ++K   +     V L  L G   D    I G+G  TA 
Sbjct: 191 LLRHLTVAEARKMPIDQIDYEAMLKGLDMDRSTFVDLCILLG--CDYCETIKGVGPVTAF 248

Query: 206 LLLQEYGNLENIL----INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
            L++E+G+L+NI+     N  + K K       + A+   ++ ++               
Sbjct: 249 KLIKEHGSLDNIVKWIQENPEKTKYKVPENWPYDEAKQLFMNPEITK--------GDEVD 300

Query: 262 LILEDCNGPRLISFL 276
           +   + N   L+ F+
Sbjct: 301 VKWNEPNVDGLVEFM 315


>gi|33862140|ref|NP_893701.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634358|emb|CAE20043.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 213

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           +KK FE+++ +KI H  ++D   L     I+ R      + S +  +  + H +  +  +
Sbjct: 74  IKKLFEDKNIMKIFHYARFDVAALRCNLEINTRNIFCTKIASKLARTYTNKHGLKDLINE 133

Query: 512 WLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
            L     E+ KS +SS    ++ +S+ Q+ ++A  +   +++    L+  L  E    + 
Sbjct: 134 LLEV---ELDKSSQSSDWGSLEDLSNKQI-DYAANDVRYLIETMHKLKLILDREGRYELA 189

Query: 570 ERL 572
           ++ 
Sbjct: 190 QKC 192


>gi|91070231|gb|ABE11151.1| putative ribonuclease D [uncultured Prochlorococcus marinus clone
           HF10-11H11]
          Length = 211

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           +LK   E++   KI H  ++D   L     I+ +      + S +  +  + H +  +  
Sbjct: 71  HLKALLEDDKITKIFHYARFDVAALKCNLKINTKNIFCTKIASKLARTYTNKHGLKDLIN 130

Query: 511 KWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           + L     E+ KS +SS    ++       ++A  +   +++    L+  L  E    + 
Sbjct: 131 ELLGI---ELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMHKLKVILERENRYELA 187

Query: 570 ERL 572
           ++ 
Sbjct: 188 QKC 190


>gi|255721403|ref|XP_002545636.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
 gi|317374882|sp|C5M2X8|FEN1_CANTT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|240136125|gb|EER35678.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
          Length = 374

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 27/195 (13%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSP 150
             Q    +   +  GIP +E    EA+   A         G  V    S D D +    P
Sbjct: 136 REQNEEAKKLLELMGIPIVEAPC-EAEAQCAELAR-----GGKVYAAASEDMDTLCYEPP 189

Query: 151 TTCLYDTVKE-EKIDIEHVIKKW---GIPP--EKMVCLQALTGDSIDNIPGIPGIGYKTA 204
               + T  E  KI I+ +  K    G+    E+ V L  L G   D    I G+G  TA
Sbjct: 190 QLLRHLTFAEARKIPIDEISYKEAMAGLDMNKEQFVDLCILLG--CDYCETIRGVGPVTA 247

Query: 205 ALLLQEYGNLENILINASRIKQK-KRRENI--LEYAETARLSRKLVMLRTDVPITIPLEH 261
             L++E+G+LE I+    +   K    EN    E  E   L+ + V   +D+        
Sbjct: 248 YKLIKEHGSLEKIVEWIEKGNTKYTVPENWPYAEARE-LFLNPE-VKKASDI-------S 298

Query: 262 LILEDCNGPRLISFL 276
           L  ++ +   LI ++
Sbjct: 299 LKWKEPDVEGLIEYM 313


>gi|291239422|ref|XP_002739622.1| PREDICTED: flap structure-specific endonuclease 1-like
           [Saccoglossus kowalevskii]
          Length = 379

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 21/187 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP ++  G EA+   A         G      + D D +   S T   + T
Sbjct: 141 CKKLLTFMGIPYLDAPG-EAEAQCAELVK----AGKVYATATEDMDSLTFGSSTVVRHMT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++ ++ +++ +  +  ++ + L  L G   D    I GIG K A  L++++
Sbjct: 196 FSEARKMPCQEYNLNNILAELELSQDEFIDLCILLG--CDYCDSIRGIGPKRAIDLIRQH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
             +E ++ +    K       +  Y E   L +K      +V   + +E L   D +   
Sbjct: 254 KTIEEVIAHLDSKKYTVPDGWL--YKEARELFKK-----PNVTAGVDIE-LKWIDPDEDG 305

Query: 272 LISFLKA 278
           LI ++  
Sbjct: 306 LIDYMSK 312


>gi|157138880|ref|XP_001647551.1| DNA polymerase gamma [Aedes aegypti]
 gi|108865347|gb|EAT32219.1| DNA polymerase gamma [Aedes aegypti]
          Length = 657

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 96/321 (29%), Gaps = 63/321 (19%)

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSL---ASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736
           +     D LP H+                  T+T R         +   +  +G ++R  
Sbjct: 225 VVWLGKDQLPKHLRDEDMDYGAIIPQVVVCGTLTRRAMEPTWMTASNAQRERIGSELRAM 284

Query: 737 FISPPTKKLISADYSQIELRILA-----HIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
             +P   K++ AD    EL I +     H A I     +   +L   +    ++  V  +
Sbjct: 285 VQAPKGYKMVGADVDSQELWIASVLGDGHAAGIHGATPLGWMTLSGSKAAKTDMHSVTAQ 344

Query: 792 KVSPQMRRHAKTINFSIIYGIS---PFRLATQLRIPRSEAADYIKR-------------- 834
            V    R HAK IN++ IYG       RL  Q     SEA    K               
Sbjct: 345 AVGI-SRDHAKVINYARIYGAGQNFAERLLKQFNPTFSEAEARSKAMKMFALTKGKKFYY 403

Query: 835 ----YFHRFPG--------------IHEYIEKTKNFVRQNGYVETIFGRRI--------- 867
               Y   FP                ++ +++     R  G  E+    R+         
Sbjct: 404 LKPDYRDEFPHKGYSGYEALKMAKVCNKAVDEMFEKARWEGGTESAMFNRLEEIAGSEAP 463

Query: 868 -------HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920
                         P+           IN  +Q  A D     ++S+   +       + 
Sbjct: 464 VTPFLGGRLSRALEPQEGTEERFLPTRINWVVQSGAVDFLHLMLVSMRWLM---GNRVRF 520

Query: 921 LLQIHDELVFEVPEEEITTAS 941
            L  HDE+ + V +     A+
Sbjct: 521 CLSFHDEVRYLVEDRYAHRAA 541


>gi|282857723|ref|ZP_06266932.1| exonuclease [Pyramidobacter piscolens W5455]
 gi|282584393|gb|EFB89752.1| exonuclease [Pyramidobacter piscolens W5455]
          Length = 252

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 87/280 (31%), Gaps = 42/280 (15%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR------- 53
           M       L+DG    Y+   A        +G+           L   L+ ++       
Sbjct: 1   MPDGKLTLLIDGDIIAYKVACACEHAIEWSEGVWT---------LHSDLKEAKALFQEQY 51

Query: 54  ---KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAF---GI 107
              ++ I +  AV    P   FR  I+P+YKANR         + PLV    +A+     
Sbjct: 52  EQIRDKITADDAVFALSPKRNFRYRIWPEYKANRKD------KRRPLVLEQLKAWMTEEY 105

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
                 G EADD +               I+S DKD   + +    + D    E  + + 
Sbjct: 106 ETFLRPGLEADDSLGILATSPYIIEGEKIIVSADKDFKTVPAKFCDIRDWEVRETTEAQA 165

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
                          Q LTGD+ D   G P  G   A  +L    +   +         K
Sbjct: 166 DYNHM---------FQTLTGDACDGYKGCPDCGPVKARKVLDGLSSYREMWPAVVEAYAK 216

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           K         E A +  +L  +          + +IL   
Sbjct: 217 KGL-----GEEYALVMARLARICRRGDYDFKRKEVILWTP 251


>gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana]
 gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
          Length = 870

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 28/227 (12%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            ++ +   P+    +  +   KD+++ V KL ++   +  +                   
Sbjct: 246 EMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLE------------------ 287

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                  SF+  T  + +S  T         L   I  YL++ F++    K+ H    D 
Sbjct: 288 --HNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDI 345

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           + L R +GI +    D    S VL+     + +  + Q +   T     K  +++    +
Sbjct: 346 IWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCGVTA---NKEYQNADWRIR 400

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
               ++  +A E+++ +L ++ L+  KL ++++       D P+++V
Sbjct: 401 PLPEEMTRYAREDTHYLLYIYDLI--KLELQRMAKDDAHTDSPLLEV 445


>gi|195031476|ref|XP_001988346.1| GH10618 [Drosophila grimshawi]
 gi|193904346|gb|EDW03213.1| GH10618 [Drosophila grimshawi]
          Length = 1147

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 84/480 (17%), Positives = 142/480 (29%), Gaps = 116/480 (24%)

Query: 560  LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE------ISKNLLSLEENI 613
            L +E+LL      +   +   ++     + +    +++  A+      IS+    LEE  
Sbjct: 591  LPIEQLLERCAIPEFARLYAAAENGDMAMDMLPGQVEEQLAKRQFFKKISQRQQRLEEK- 649

Query: 614  YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL-----EQINCGDNPII 668
            Y  SG   N     Q+ +     LK P             ++D      E      +P  
Sbjct: 650  YKGSGVWCN-----QVLEDCCFFLKLPHKNGPSFRVGNPLSKDFLNKFSENALSSGDPTC 704

Query: 669  KNILEWRQLSKIKSTY-----------ADSLPNHINKRTQR----------VHTFYSLAS 707
            +      +++++ S +              LP        R          +     +A 
Sbjct: 705  QAASRVIEIARMMSYWRNNRDRILSQMVIWLPAQQLPADLRSHAERTAYGAICPQVVVAG 764

Query: 708  TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767
            T+T R         +      +G ++R    +PP  KL+ AD    EL I + +      
Sbjct: 765  TLTRRAMESTWMTASNSRANRIGSELRAMVQAPPGYKLVGADVDSQELWIASVLGDAYAH 824

Query: 768  YQVFE-------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS- 813
             +                N  D+H + A         KV    R HAK +N++ IYG   
Sbjct: 825  GEHGATPLGWMTLSGSKSNGSDMHSITA---------KVVGISRDHAKVLNYARIYGAGQ 875

Query: 814  --PFRLATQLRIPRS--EAADYIKRYFHR------FPGIHEYIE----------KTKNFV 853
                 L  Q     S  EA     + F        +    E+ +          + K   
Sbjct: 876  QFAETLLQQFNPSLSATEAKAKAMKMFGATKGKRIYRLREEFHDELEDRTYSGYEAKRLA 935

Query: 854  RQN----GYV---------------------------ETIF-GRRIHYDEINSPKSSIRN 881
             Q     G V                           ET F G R+         +    
Sbjct: 936  LQRNRSIGEVFHRPSWQGGTESAMFNRLEEIATREQPETPFLGCRLSRALETRGDADQEQ 995

Query: 882  INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
                  +N  +Q  A D     ++S+   L       +  L  HDEL + V +E    A+
Sbjct: 996  RFLPTRVNWVVQSGAVDFLHLMLVSMRWLL---GPHARFCLSFHDELRYLVKDELAYKAA 1052


>gi|194100281|ref|YP_002003479.1| gp6 [Enterobacteria phage BA14]
 gi|193201276|gb|ACF15756.1| gp6 [Enterobacteria phage BA14]
          Length = 304

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 90/245 (36%), Gaps = 24/245 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPV-NAIAG-FCNMLWKLLQNS---RKES 56
           + +N + ++DG   +++A  A+ + +   D +       G   N+L   +++    +K  
Sbjct: 16  KSDNGVLVMDGDWLVFQAMAASEVETDWGDDVWTLECDHGKAWNILVDSIKSYASRKKAW 75

Query: 57  IASHFAVIFDYPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
             +   + F   AV +R E+  P YK NR    + +      V          +I     
Sbjct: 76  RDAPIVLAF-TDAVNWRKELVDPTYKENRKASRKPVGY-RAFVERVQACEDWTSILEPRL 133

Query: 116 EADDIIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
           E DD++      A+  GF    ++S DKD    +     L+ T     +  +     +  
Sbjct: 134 EGDDVMGIIGSGAKHFGFKKAVLVSCDKDFKT-IPDCDFLWCTTGN-ILTQDQTTADY-- 189

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKRREN 232
                   Q + GD  D   GIPG G  TA  L   Y           +      ++ + 
Sbjct: 190 ----WHIYQTIKGDLTDGYGGIPGWGETTAEWLENPY-----AFEQVEKTFKSGARKGQT 240

Query: 233 ILEYA 237
           +LE+ 
Sbjct: 241 VLEWK 245


>gi|91773853|ref|YP_566545.1| flap endonuclease-1 [Methanococcoides burtonii DSM 6242]
 gi|121684238|sp|Q12UT1|FEN_METBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|91712868|gb|ABE52795.1| FEN1 flap endonuclease with 5'-3' exonuclease activity
           [Methanococcoides burtonii DSM 6242]
          Length = 338

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 116/352 (32%), Gaps = 82/352 (23%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKES 56
           N +  +D  + +Y+       + R+ DG P         + ++G    L  L++   K  
Sbjct: 21  NKVVAIDAYNTLYQ----FLSIIRQRDGTPLKDSRGQITSHLSGILYRLTSLIEAGVKP- 75

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIP---EMLLPQ-----------------LP 96
                  +FD     F+++        R       E    Q                   
Sbjct: 76  -----IFVFDGKPPDFKSDTLAKRHEVRESATAKWEDAKAQGLEEEAYKYAQASSKVTRE 130

Query: 97  LVRL---ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
           ++       +  GIP ++    E +   +      + +     I S D D     +P   
Sbjct: 131 MIDDSVRLLELMGIPYVKAPS-EGEAQASYMVQKGDAD----YIGSQDYDSFLFGAPQVV 185

Query: 154 LYDTVKEEK--------IDIE-------HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
              T+  ++        +D++         + + GI  ++++ +    G   D   G+  
Sbjct: 186 RNLTITGKRKLPKKNIYVDVKPEVLSLVDSLGELGITRQQLIDIAMCVG--TDYNTGLEN 243

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258
           IG K A  L++E+G+++ +L         K  E++    +             + P+T  
Sbjct: 244 IGPKRALKLVKEHGDIKVVLKEL-----GKDIEDLDAKRD----------FFMNPPVTDD 288

Query: 259 LEHLILEDCNGPRLISFL-KALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
            E L     +   +I  L K  +F++   RV    D   ANI      ++  
Sbjct: 289 YE-LKWIKPDRAGVIDLLCKKHDFSE--ERVNKALDRLEANIGGSQSTLDQW 337


>gi|311347844|gb|ADP90867.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 112/381 (29%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 852

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 853  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 912

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 913  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFA 962

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 963  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISL 1022

Query: 846  ------------------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN-INERA 886
                               E       + G    +F +       + P++ +      RA
Sbjct: 1023 QDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRA 1082

Query: 887  AINAPIQ-------------GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               + +Q              SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1083 LEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1142

Query: 934  EEEITTAS------QIIVHSM 948
            EE+   A+       ++   M
Sbjct: 1143 EEDRYRAALALQITNLLTRCM 1163


>gi|311347878|gb|ADP90884.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 111/381 (29%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 852

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 853  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 912

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 913  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFA 962

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 963  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISL 1022

Query: 846  ------------------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN-INERA 886
                               E       + G    +F +       + P++ +      RA
Sbjct: 1023 QDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRA 1082

Query: 887  AINAPIQ-------------GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               + +Q              SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1083 LEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1142

Query: 934  EEE------ITTASQIIVHSM 948
            EE+          + ++   M
Sbjct: 1143 EEDCYRAALALQITNLLTRCM 1163


>gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619]
 gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619]
          Length = 377

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I + + + +  Q+  T+   +       +D F+ K   I I   ++       +   +
Sbjct: 6   HWIRDDQTLAELCQRWRTLPFVALDTEFMRVDTFYPKAGLIQIGDGERAYLIDPLLIVDW 65

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
             L                       +  E+   +K+ H    D  VL R  G   +   
Sbjct: 66  QPLG----------------------ELLEDAGVVKVLHACSEDLEVLLRLTGKLPQPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     E+ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAGYLNLGFSM-GYSRLVQEVLGL---ELPKGETRSDWLQRPLSDTQVSYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+  LRP+L  +K   V E 
Sbjct: 160 HLAELFAALRPRLSDDKYAWVLED 183


>gi|294675670|ref|YP_003576285.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294474490|gb|ADE83878.1| ribonuclease D-1 [Rhodobacter capsulatus SB 1003]
          Length = 204

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 63/196 (32%), Gaps = 24/196 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                 + L+     +    T  +D    +   + +S+ D                  H 
Sbjct: 6   HQNDLPEGLDLGPVVAIDTETMGLDPRRDRLCLVQMSSGDGH---------------AHL 50

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
            Q + G+    +     L     +    K+ H  ++D   L+  +G+         + S 
Sbjct: 51  VQIAKGQTEAPR-----LCAMLADPKVEKLFHFARFDIAALYNAFGVVTAPVFCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + Q  +     ++ K +++S        +   ++A  +   + QL  
Sbjct: 106 MVRTFTDRHGLKYLLQDLVGV---DVSKQQQTSDWGAAELTAAQLDYAASDVLYLHQLKA 162

Query: 555 LLRPKLIVEKLLHVYE 570
            L  +L  E    + +
Sbjct: 163 ALVTRLAREGRTELAQ 178


>gi|114658821|ref|XP_523149.2| PREDICTED: DNA polymerase subunit gamma-1 [Pan troglodytes]
          Length = 1236

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 112/381 (29%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 790  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 849

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 850  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 909

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 910  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFA 959

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 960  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISL 1019

Query: 846  ------------------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN-INERA 886
                               E       + G    +F +       + P++ +      RA
Sbjct: 1020 QDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRA 1079

Query: 887  AINAPIQ-------------GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               + +Q              SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1080 LEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1139

Query: 934  EEEITTAS------QIIVHSM 948
            EE+   A+       ++   M
Sbjct: 1140 EEDRYRAALALQITNLLTRCM 1160


>gi|325094624|gb|EGC47934.1| DNA repair protein RAD2 [Ajellomyces capsulatus H88]
          Length = 359

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 22/190 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   SP    + T
Sbjct: 105 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 159

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP +G  TA  L++++
Sbjct: 160 FSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 217

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI---TIPLEHLILEDCN 268
           G+LE ++       +KK    I E     + +R+L     D  +     P      E  +
Sbjct: 218 GSLEQVVEAIKSDPKKKYT--IPEDWPY-KEAREL---FFDPDVRNADHPDCDFKWEAPD 271

Query: 269 GPRLISFLKA 278
              L+ FL  
Sbjct: 272 VEGLVKFLVE 281


>gi|21779923|gb|AAM77583.1|AF497906_1 polymerase (DNA directed), gamma [Homo sapiens]
          Length = 1240

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 112/381 (29%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 794  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 853

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 854  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 913

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 914  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFA 963

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 964  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISL 1023

Query: 846  ------------------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN-INERA 886
                               E       + G    +F +       + P++ +      RA
Sbjct: 1024 QDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRA 1083

Query: 887  AINAPIQ-------------GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               + +Q              SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1084 LEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1143

Query: 934  EEEITTAS------QIIVHSM 948
            EE+   A+       ++   M
Sbjct: 1144 EEDRYRAALALQITNLLTRCM 1164


>gi|4505937|ref|NP_002684.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|187171277|ref|NP_001119603.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|1706507|sp|P54098|DPOG1_HUMAN RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|1399956|gb|AAC50712.1| DNA polymerase gamma [Homo sapiens]
 gi|1438508|emb|CAA66719.1| DNA polymerase gamma [Homo sapiens]
 gi|27502689|gb|AAH42571.1| Polymerase (DNA directed), gamma [Homo sapiens]
 gi|29791648|gb|AAH50559.1| POLG protein [Homo sapiens]
 gi|119622450|gb|EAX02045.1| polymerase (DNA directed), gamma, isoform CRA_a [Homo sapiens]
 gi|119622452|gb|EAX02047.1| polymerase (DNA directed), gamma, isoform CRA_a [Homo sapiens]
 gi|311347818|gb|ADP90854.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347820|gb|ADP90855.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347822|gb|ADP90856.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347824|gb|ADP90857.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347826|gb|ADP90858.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347828|gb|ADP90859.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347830|gb|ADP90860.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347832|gb|ADP90861.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347834|gb|ADP90862.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347836|gb|ADP90863.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347838|gb|ADP90864.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347840|gb|ADP90865.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347842|gb|ADP90866.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347846|gb|ADP90868.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347848|gb|ADP90869.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347850|gb|ADP90870.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347854|gb|ADP90872.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347856|gb|ADP90873.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347858|gb|ADP90874.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347860|gb|ADP90875.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347862|gb|ADP90876.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347864|gb|ADP90877.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347866|gb|ADP90878.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347868|gb|ADP90879.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347870|gb|ADP90880.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347872|gb|ADP90881.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347874|gb|ADP90882.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347876|gb|ADP90883.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347880|gb|ADP90885.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347882|gb|ADP90886.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347884|gb|ADP90887.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347886|gb|ADP90888.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347888|gb|ADP90889.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347890|gb|ADP90890.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347892|gb|ADP90891.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347894|gb|ADP90892.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347896|gb|ADP90893.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 112/381 (29%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 852

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 853  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 912

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 913  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFA 962

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 963  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISL 1022

Query: 846  ------------------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN-INERA 886
                               E       + G    +F +       + P++ +      RA
Sbjct: 1023 QDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRA 1082

Query: 887  AINAPIQ-------------GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               + +Q              SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1083 LEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1142

Query: 934  EEEITTAS------QIIVHSM 948
            EE+   A+       ++   M
Sbjct: 1143 EEDRYRAALALQITNLLTRCM 1163


>gi|1644239|dbj|BAA12223.1| mitochondrial DNA polymerase gamma [Homo sapiens]
          Length = 1241

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 112/381 (29%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 795  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 854

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 855  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 914

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 915  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFA 964

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 965  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISL 1024

Query: 846  ------------------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN-INERA 886
                               E       + G    +F +       + P++ +      RA
Sbjct: 1025 QDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRA 1084

Query: 887  AINAPIQ-------------GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               + +Q              SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1085 LEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1144

Query: 934  EEEITTAS------QIIVHSM 948
            EE+   A+       ++   M
Sbjct: 1145 EEDRYRAALALQITNLLTRCM 1165


>gi|225555317|gb|EEH03609.1| DNA-repair protein rad2 [Ajellomyces capsulatus G186AR]
          Length = 359

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   SP    + T
Sbjct: 105 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 159

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP +G  TA  L++++
Sbjct: 160 FSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 217

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E     + +R+L           P      E  +   
Sbjct: 218 GSLEQVVEAIKSDPKKKYT--IPEDWPY-KEARELFFDPDVRKADHPDCDFKWEAPDVEG 274

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 275 LVKFLVE 281


>gi|311347852|gb|ADP90871.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 112/381 (29%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 852

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 853  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 912

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 913  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFA 962

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 963  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISL 1022

Query: 846  ------------------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN-INERA 886
                               E       + G    +F +       + P++ +      RA
Sbjct: 1023 QDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRA 1082

Query: 887  AINAPIQ-------------GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               + +Q              SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1083 LEPSAVQEEFMTSHVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1142

Query: 934  EEEITTAS------QIIVHSM 948
            EE+   A+       ++   M
Sbjct: 1143 EEDRYRAALALQITNLLTRCM 1163


>gi|158255998|dbj|BAF83970.1| unnamed protein product [Homo sapiens]
          Length = 1239

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 112/381 (29%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 852

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 853  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 912

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 913  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFA 962

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 963  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISL 1022

Query: 846  ------------------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN-INERA 886
                               E       + G    +F +       + P++ +      RA
Sbjct: 1023 QDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRA 1082

Query: 887  AINAPIQ-------------GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               + +Q              SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1083 LEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1142

Query: 934  EEEITTAS------QIIVHSM 948
            EE+   A+       ++   M
Sbjct: 1143 EEDRYRAALALQITNLLTRCM 1163


>gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 377

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 105/345 (30%), Gaps = 89/345 (25%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +Q  ++A  +   +  +   L          H Y   +  +  +   +   G+ +D DL 
Sbjct: 4   AQFVDYARRDVAAMRDVVKRL--------PSHNYTGAELALWFLDQTINDRGVLVDTDLA 55

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +     + +   +L E   DL+           +      +        T  G      Q
Sbjct: 56  QAAIGAVERAKQALAERTSDLTAG---------VVQAATQRDALLHHLSTAHGVALPDMQ 106

Query: 656 DLEQINCGDNPII-----KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
                 C D+P++     + +   RQ S   +    +L N  ++  +   T     ++ T
Sbjct: 107 QHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRT 166

Query: 711 GRLASLEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTK 743
           GR A       N+P  T   + I                           R   I+P  K
Sbjct: 167 GRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHK 226

Query: 744 KLISADYSQIELRILAHIAKITPLYQVF-------------------------------- 771
           KL+ AD S IE R+LA +A  TP    F                                
Sbjct: 227 KLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWHSGEAITHGALRGAPITLQ 286

Query: 772 --------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808
                       DI++   A  FG+  + V+ Q R+  K    ++
Sbjct: 287 WNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELAL 331


>gi|15239221|ref|NP_198440.1| 3'-5' exonuclease domain-containing protein / helicase and RNase D
           C-terminal domain-containing protein / HRDC
           domain-containing protein [Arabidopsis thaliana]
          Length = 838

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 28/227 (12%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            ++ +   P+    +  +   KD+++ V KL ++   +  +                   
Sbjct: 214 EMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLE------------------ 255

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                  SF+  T  + +S  T         L   I  YL++ F++    K+ H    D 
Sbjct: 256 --HNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDI 313

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           + L R +GI +    D    S VL+     + +  + Q +   T     K  +++    +
Sbjct: 314 IWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCGVTA---NKEYQNADWRIR 368

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
               ++  +A E+++ +L ++ L+  KL ++++       D P+++V
Sbjct: 369 PLPEEMTRYAREDTHYLLYIYDLI--KLELQRMAKDDAHTDSPLLEV 413


>gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
 gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
          Length = 204

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 24/184 (13%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +    T  ++    +   + +S  D                     Q + G+     
Sbjct: 18  PIVAIDTETLGLNHRRDRLCVVQLSIGDGD---------------AELVQIAKGQTQA-- 60

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                L K   +   LK+ H  ++D  +L + +G+         + S +  +    H + 
Sbjct: 61  ---ENLVKLLVDPKVLKLFHFARFDMGILAKTFGVMPAPVYCTKIASKLTRTYTDRHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +A++       EI K ++SS           Q +A  +   + QL   L   L  E   
Sbjct: 118 DLARELAGV---EISKQQQSSDWGAATLTDAQQAYAASDVLYLHQLKEKLDAMLAREGRT 174

Query: 567 HVYE 570
            + +
Sbjct: 175 ELAQ 178


>gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana]
          Length = 834

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 28/227 (12%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            ++ +   P+    +  +   KD+++ V KL ++   +  +                   
Sbjct: 209 EMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLE------------------ 250

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                  SF+  T  + +S  T         L   I  YL++ F++    K+ H    D 
Sbjct: 251 --HNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDI 308

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           + L R +GI +    D    S VL+     + +  + Q +   T     K  +++    +
Sbjct: 309 IWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCGVTA---NKEYQNADWRIR 363

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
               ++  +A E+++ +L ++ L+  KL ++++       D P+++V
Sbjct: 364 PLPEEMTRYAREDTHYLLYIYDLI--KLELQRMAKDDAHTDSPLLEV 408


>gi|320165003|gb|EFW41902.1| flap endonuclease 1-B [Capsaspora owczarzaki ATCC 30864]
          Length = 388

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 25/187 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLY 155
            +      G+P I     EA+   A           G      + D D +   S     +
Sbjct: 141 CKRLLTLMGVPYISAPC-EAEAQCAALVKSGSVFAAG------TEDMDALTFGSKVLLRH 193

Query: 156 DTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
            T  E      ++ +++  ++   +  E+ V L  L G   D    I GIG   A  L+Q
Sbjct: 194 LTFSEARKMPIKEFNLDRALEGLKLTMEQFVDLCILLG--CDYCESIKGIGPTRAYALIQ 251

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           EY  +E I+ N    K           A T  L  ++               L     + 
Sbjct: 252 EYKTIEEIIKNLDTEKYPLPANWAFAEARTLFLEPEVT--------PGEELDLKWTAPDV 303

Query: 270 PRLISFL 276
             L+ F+
Sbjct: 304 EGLVKFM 310


>gi|312137188|ref|YP_004004525.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
 gi|311224907|gb|ADP77763.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
          Length = 327

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +    A GIP I+         +        K G A  + S D D +   +P       +
Sbjct: 136 KELLDAMGIPYIQAPNEGEAQAVYLV-----KNGDAWAVASQDYDCLLFGAPRVIRNLAI 190

Query: 159 KE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
                 E ++++ ++KK GI  E+++ +  L G   D  PG+ GIG K    L++++G++
Sbjct: 191 SSDINLELLELDKILKKLGISREQLIDIALLVG--TDFNPGVKGIGAKRGLELIKKFGDI 248

Query: 215 ENILIN 220
             ++  
Sbjct: 249 YTVIKR 254


>gi|239830972|ref|ZP_04679301.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823239|gb|EEQ94807.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 205

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 24/180 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            + + +    T  ++    +   + IS  D   D                 Q   G+   
Sbjct: 17  QVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADV---------------IQIEAGQKKA 61

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L K  ++    KI H  ++D  VL   +G   +      + S +  +    H 
Sbjct: 62  PN-----LVKLLKDRSITKIFHFGRFDLAVLAHTFGTMPQPVFCTKIASKLTRTYTDRHG 116

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  +  + L  +   I K ++SS    +   +   E+A  +   + +L  +L  +L  + 
Sbjct: 117 LKELCNELLDVS---ISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRLERDG 173


>gi|262276702|ref|ZP_06054497.1| ribonuclease D [alpha proteobacterium HIMB114]
 gi|262225133|gb|EEY75590.1| ribonuclease D [alpha proteobacterium HIMB114]
          Length = 204

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L+   S +       ++    K   + I   D  +   F       D             
Sbjct: 18  LKNASSIAIDGEFSGLNPLTDKLHLLQIC--DGSNFVHFVKFDGEYDAP----------- 64

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSS 502
                    LKK  EN    KI H  + D   + ++  I+++   D  + S +     SS
Sbjct: 65  --------KLKKVLENNSIKKIFHFGRADLGFIKKHLNINVKNIYDTKIASKICRKFTSS 116

Query: 503 HDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           H +  +++  ++       +     K     D+I      ++A  +   + ++   L   
Sbjct: 117 HGLKDLSRDLININLSKEHQTSDWGKKEYSDDQI------KYAANDVLHLHKIKEELDKI 170

Query: 560 LIVEKLLHVYERL 572
           LI E  + + E+ 
Sbjct: 171 LIRENKVELAEKC 183


>gi|310722576|ref|YP_003969399.1| RNaseH ribonuclease [Aeromonas phage phiAS5]
 gi|306021419|gb|ADM79953.1| RNaseH ribonuclease [Aeromonas phage phiAS5]
          Length = 306

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 74/233 (31%), Gaps = 35/233 (15%)

Query: 31  DGLPVNAIAGFC-NMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPE 89
           D +  N +     + L   + N ++E      AV        +R + Y  YK +R +  +
Sbjct: 36  DKIDTNLVRHLILSSLKYNVLNRKREYPNIIIAVDNSADGGYWRRQKYYFYKKHRERDRK 95

Query: 90  MLLPQLPLVRLAT--------QAFGIPAIEIQGFEADDIIATYTYIAEKE--GFAVTIIS 139
                   +  +                + +   EADDII       +++     V ++S
Sbjct: 96  ESEWDWESIFDSLKTVAYEIRDNMPYKTLILPHTEADDIIGVLCKYLDEKCPDAPVLVVS 155

Query: 140 TDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
           +D D+ Q         +   +++      V  K G    + +  + + GD+ D +  I  
Sbjct: 156 SDGDMTQTQRYKNVKQWSPGQKKW-----VKPKEG-TWRQSLITKIIKGDTGDGVANIKS 209

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
                           + I       +QK     +L     A  ++    L T
Sbjct: 210 RS--------------DFIYTKLDGERQKSISSKLLA---QAFETKDPATLFT 245


>gi|22298627|ref|NP_681874.1| putative ribonuclease D [Thermosynechococcus elongatus BP-1]
 gi|22294807|dbj|BAC08636.1| tlr1083 [Thermosynechococcus elongatus BP-1]
          Length = 211

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 63/209 (30%), Gaps = 26/209 (12%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           +         +    T  ++    +   + +   + +     K+     +          
Sbjct: 19  LAHFLNADQLAVDTETMGLNIPRDRLCLVQVCDPEGQVAV-VKIGRGQKEAPH------- 70

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSG 499
                       L++  E+    KI H  ++D   L    GI +       + S +  + 
Sbjct: 71  ------------LQQLLEHPRITKIFHYARFDLATLRYHLGIRVHPVFCTKIASKIARTY 118

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD-SQVQEHAIENSNVILQLWLLLRP 558
              H +  +    L     EI KS +SS   +  +       +A  +   ++ L   L  
Sbjct: 119 SPRHGLKDLVLDLLGV---EIDKSAQSSDWGNATALREDQLRYAANDVRYLIPLRQQLTA 175

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            L  E+   + +      +  +  +++ G
Sbjct: 176 MLKREERFELVQTA-LSCLPAIVDLDLAG 203


>gi|2494178|sp|Q92076|DPOG1_CHICK RecName: Full=DNA polymerase subunit gamma-1; AltName:
           Full=Mitochondrial DNA polymerase catalytic subunit
 gi|1405384|gb|AAC60018.1| DNA polymerase gamma [Gallus gallus]
          Length = 647

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 77/490 (15%), Positives = 153/490 (31%), Gaps = 119/490 (24%)

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD----- 615
            VE+L  +   +++P     SQM+      D+D L ++  E S+         Y+     
Sbjct: 104 KVEELSQLELDMERPGRAEQSQMQ------DEDGLPELVEESSQPSFHHGNGPYNDVNIP 157

Query: 616 ---------LSGEKFNLSSP--KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
                      G + N+ SP  K     +       +  +T   +     + +       
Sbjct: 158 GCWFFKLPHKDGNENNVGSPFAKDFLPRMEDGTLRAAVGRTHGTRALEINKMVSFWRNAH 217

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR-VHTFYSLASTMTGRLASLEPNLQNI 723
             +   ++ W +  ++        P +  +     +      A T+T R         + 
Sbjct: 218 KRVSSQVVVWLKKGELPRAVTRH-PAYSEEEDYGAILPQVVTAGTITRRAVEPTWLTASN 276

Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVFE------ 772
                +G +++     PP   L+ AD    EL I      AH A +              
Sbjct: 277 ARADRVGSELKAMVQVPPGYSLVGADVDSQELWIAAVLGEAHFAGMHGCTAFGWMTLQGK 336

Query: 773 --NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR----LATQLRIPR 825
             +  D+H   AA +            R HAK  N+  IYG   PF     +    R+ +
Sbjct: 337 KSDGTDLHSKTAATV---------GISREHAKVFNYGRIYGAGQPFAERLLMQFNHRLTQ 387

Query: 826 SEAADYIKRYFHRFPGIHEY------------IEKTKNFVRQNGYVETIF---------- 863
            +A +  ++ +    GI  +            +E   +   ++G V              
Sbjct: 388 QQAREKAQQMYAVTKGIRRFHLSEEGEWLVKELELAVDKA-EDGTVSAQDVQKIQREAMR 446

Query: 864 --GRRIHYDEINSPKSS----------IRNINERAAINAPI------------------- 892
              R+  +D +     +          + +I   A+   P+                   
Sbjct: 447 KSRRKKKWDVVAHRMWAGGTESEMFNKLESIALSASPQTPVLGCHISRALEPAVAKGEFL 506

Query: 893 --------QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS--- 941
                   Q SA D     ++S+    E++ +  +  + IHDE+ + V E++   A+   
Sbjct: 507 TSRVNWVVQSSAVDYLHLMLVSMKWLFEEYDINGRFCISIHDEVRYLVQEQDRYRAALAL 566

Query: 942 ---QIIVHSM 948
               ++   M
Sbjct: 567 QITNLLTRCM 576


>gi|84500657|ref|ZP_00998906.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
 gi|84391610|gb|EAQ03942.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
          Length = 204

 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 74/213 (34%), Gaps = 25/213 (11%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
           Q     L+     +    T  ++    +   + +S  D                  H  Q
Sbjct: 8   QDLPDGLDLGPVVAIDCETMGLNPHRDRLCVVQMSGGDGD---------------AHIVQ 52

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
            + G+++        L     +   LK+ H  ++D   ++  +G          + S ++
Sbjct: 53  VAIGQDSAPN-----LCAMLTDPKVLKLFHFGRFDIAAMYNAFGALAAPVYCTKIASRLV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H + ++ Q+ L     ++ K ++SS    +   +   E+A  +   + +L   L
Sbjct: 108 RTYTDRHGLKNLTQELLGI---DLSKQQQSSDWGAEELSAAQLEYAASDVLYLHRLREEL 164

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +L  E    + +      + V +++++ G  
Sbjct: 165 DARLAREGRTEIAQAC-FDFLPVRARLDLMGWP 196


>gi|47934610|gb|AAT39743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 96

 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT-DLGQKIRR 735
           L K +    +S    ++    RVH        +TGR+    PN+  +P  +   G + R 
Sbjct: 2   LGKERVAQVESWLEFVSDE-HRVHGKVITNGAVTGRMTHHSPNMAQVPSSSSPWGHECRD 60

Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769
            +     K L+ AD S +ELR+LAH  K     +
Sbjct: 61  CWTVDEGKILVGADASSLELRMLAHYMKDESYAK 94


>gi|304320833|ref|YP_003854476.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
 gi|303299735|gb|ADM09334.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
          Length = 204

 Score = 63.1 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 55/195 (28%), Gaps = 24/195 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   +   G+ +    T  ++    +   + +S  D  D      +    D     
Sbjct: 6   HRNDLPADIRFDGAVAVDSETLGLNPLRDRLCVVQLSAGDG-DAHLVTFDAGAYDAPH-- 62

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY 494
                            LK    +   LKI H  ++D  V  H  G+         + S 
Sbjct: 63  -----------------LKAVLSDPQLLKIFHFARFDVAVFKHWLGVDTTPIYCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +  +    H +  + ++       E+ K ++SS           + +A  +   +  +  
Sbjct: 106 LARTYTDRHGLKDVVREMTGV---ELSKQQQSSDWAAAELTEAQRAYAASDVLHLHAVRE 162

Query: 555 LLRPKLIVEKLLHVY 569
            L   +  E    + 
Sbjct: 163 GLDRMIDREGRRALL 177


>gi|302337887|ref|YP_003803093.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293]
 gi|301635072|gb|ADK80499.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293]
          Length = 284

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           L+ +++ FE+  F KI ++   D+ +L  RYGI      D+M    +LD       +AS+
Sbjct: 67  LALVREIFESGSFRKIVYDCSSDRTLLYRRYGIHFNEVCDLMPAVVLLD--FQKKGLASV 124

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
               L +  ++  K  +    + +  D+   E+A  +   +  L   L  +L  E L   
Sbjct: 125 LSSVL-HIEEKPKKKFQQYDWMSRPIDADALEYAAADVLHLFTLKEELFKRLEEEGLSDE 183

Query: 569 YER 571
           YER
Sbjct: 184 YER 186


>gi|190345050|gb|EDK36862.2| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 338

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 15/190 (7%)

Query: 92  LPQLPLVRLATQAFGIPAI----EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
             Q    +   +  GIP +    E +   A+  +A   + A  E       S    L  L
Sbjct: 100 KEQNNEAKKLLELMGIPYVDAPCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHL 159

Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
                        ++ID +  ++   +  +  + L  L G   D    I G+G  TA  L
Sbjct: 160 TFAEARKMPI---DQIDYKKAMEGLEMDKQTFIDLCILLG--CDYCETIKGVGPVTAFKL 214

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE-HLILED 266
           ++E+G+L+NI+           +  + E    A  +R+L     +  ++   E +L  ++
Sbjct: 215 IKEHGSLDNIVKWIEENPDST-KFKVPENWPYAE-AREL---FLNPDVSPGKEINLKWQE 269

Query: 267 CNGPRLISFL 276
                L+ F+
Sbjct: 270 PKVDELVEFM 279


>gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
 gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
          Length = 207

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 64/204 (31%), Gaps = 25/204 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +    +  +       S +    T  +     +   + +     +             
Sbjct: 6   VCDRDLTKDILSNYLQADSMAVDTETMGLLPRRDRLCLVQLCDPLGQVTA---------- 55

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI 489
           + +H  Q               LK+  E    +K+ H  ++D  +L  Y GI +      
Sbjct: 56  IRIHKGQQEAPN----------LKQLMEANSIVKVFHFARFDVAMLQHYLGIKVSPIFCT 105

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNV 548
            + S +  +    H +  +  +     + E+ KS +SS     +    +   +A  +   
Sbjct: 106 KISSKLARTYTGKHGLKDLVME---LEKVELDKSSQSSDWGNAENLTEKQLNYAANDVRY 162

Query: 549 ILQLWLLLRPKLIVEKLLHVYERL 572
           +L +   L   L  E+   + ++ 
Sbjct: 163 LLSVREKLSKILKREERWELAQQC 186


>gi|153007480|ref|YP_001368695.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
 gi|151559368|gb|ABS12866.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
          Length = 205

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            + + +    T  ++    +   + IS  D   D                 Q   G+   
Sbjct: 17  QVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADV---------------IQIEAGQKKA 61

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L K  ++    KI H  ++D  VL + +G   +      + S +  +    H 
Sbjct: 62  PN-----LVKLLKDRSITKIFHFGRFDLAVLAQAFGTMPQPVFCTKIASKLTRTYTDRHG 116

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  +  + L  +   I K ++SS    +   +   E+A  +   + +L  +L  +L  + 
Sbjct: 117 LKELCNELLDVS---ISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRLERDG 173


>gi|317376215|sp|A5DCF5|FEN1_PICGU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 374

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 15/190 (7%)

Query: 92  LPQLPLVRLATQAFGIPAI----EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
             Q    +   +  GIP +    E +   A+  +A   + A  E       S    L  L
Sbjct: 136 KEQNNEAKKLLELMGIPYVDAPCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHL 195

Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
                        ++ID +  ++   +  +  + L  L G   D    I G+G  TA  L
Sbjct: 196 TFAEARKMPI---DQIDYKKAMEGLEMDKQTFIDLCILLG--CDYCETIKGVGPVTAFKL 250

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE-HLILED 266
           ++E+G+L+NI+           +  + E    A  +R+L     +  ++   E +L  ++
Sbjct: 251 IKEHGSLDNIVKWIEENPDST-KFKVPENWPYAE-AREL---FLNPDVSPGKEINLKWQE 305

Query: 267 CNGPRLISFL 276
                L+ F+
Sbjct: 306 PKVDELVEFM 315


>gi|154244026|ref|YP_001414984.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
 gi|154158111|gb|ABS65327.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
          Length = 206

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                          +    T  ++ F  +   + +S  D   D           + +  
Sbjct: 6   HRGDLPADFVAAPVVAIDTETMGLNPFRDRLCLVQLSNGDGSADL----------VQIPQ 55

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
             D+T    LT+           +    K+ H  ++D  VL   + +  +      + S 
Sbjct: 56  GADATTAPNLTR--------LLADPAITKLFHFGRFDIAVLQHTFHVMPQPVWCTKIASR 107

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLW 553
           ++ +    H +  + ++ ++    +I K ++SS      +SD+Q+  +A  +   +  + 
Sbjct: 108 LVRTYTDRHGLKDLLRETINV---DISKQQQSSDWGAKDLSDAQLA-YAASDVLHLHAVK 163

Query: 554 LLLRPKLIVEK 564
             L   L  E 
Sbjct: 164 AKLEEMLAREN 174


>gi|15790386|ref|NP_280210.1| flap endonuclease-1 [Halobacterium sp. NRC-1]
 gi|169236120|ref|YP_001689320.1| flap endonuclease-1 [Halobacterium salinarum R1]
 gi|28380023|sp|Q9HQ27|FEN_HALSA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|226700952|sp|B0R5F5|FEN_HALS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|10580870|gb|AAG19690.1| DNA repair protein [Halobacterium sp. NRC-1]
 gi|167727186|emb|CAP13972.1| putative DNA repair DNAse IV [Halobacterium salinarum R1]
          Length = 327

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 8/127 (6%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           R       IP +E    E +   A  T   +   +A    S D D + L SP T    T 
Sbjct: 138 RELFDLLDIPQVEAPA-EGEAQAAYMTRTDDAVDYA---GSDDYDCLLLGSPVTLRQLTS 193

Query: 159 KE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
               E +D +  + +  +  E++V +  L G   D  PGI G G  TA   + E+G+L +
Sbjct: 194 SGHPELMDFDATLAEHDLTWEQLVDVGILCG--TDFNPGIDGFGPTTALDAIGEHGDLWD 251

Query: 217 ILINASR 223
           +L     
Sbjct: 252 VLAAEGE 258


>gi|167933075|ref|ZP_02520162.1| hypothetical protein cdivTM7_00514 [candidate division TM7
          single-cell isolate TM7b]
          Length = 53

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 1  MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQ 50
          M     L ++DG S  YR +YA P LS K DG P   + GF ++  ++++
Sbjct: 5  MVHMKRLVIIDGKSVFYRGYYAMPGLSTK-DGTPTGGVFGFASLSLEIVK 53


>gi|146423306|ref|XP_001487583.1| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 338

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 15/190 (7%)

Query: 92  LPQLPLVRLATQAFGIPAI----EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
             Q    +   +  GIP +    E +   A+  +A   + A  E       S    L  L
Sbjct: 100 KEQNNEAKKLLELMGIPYVDAPCEAEAQCAELAVAGKVFAAASEDMDTLCYSPPYLLRHL 159

Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
                        ++ID +  ++   +  +  + L  L G   D    I G+G  TA  L
Sbjct: 160 TFAEARKMPI---DQIDYKKAMEGLEMDKQTFIDLCILLG--CDYCETIKGVGPVTAFKL 214

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE-HLILED 266
           ++E+G+L+NI+           +  + E    A  +R+L     +  ++   E +L  ++
Sbjct: 215 IKEHGSLDNIVKWIEENPDST-KFKVPENWPYAE-AREL---FLNPDVSPGKEINLKWQE 269

Query: 267 CNGPRLISFL 276
                L+ F+
Sbjct: 270 PKVDELVEFM 279


>gi|328767973|gb|EGF78021.1| hypothetical protein BATDEDRAFT_27210 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 826

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 109/278 (39%), Gaps = 29/278 (10%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI-AIST- 413
           Q   +  I    Y  +   +  ++  + LE+          D ++   S    +   +  
Sbjct: 215 QHPYRSEIETIQYPVVYFKQHPEEIYRSLESTPLTWIDTP-DKLETLCSILEGVTEFAVD 273

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L+  D  S++  T  + +S  T +D      + +  L  L   F N   +K+ H  + D 
Sbjct: 274 LEHHDFRSYQGFTCLMQISTRT-EDFLVDTLILRNSLHALNTSFANPQIVKVFHGAEMDI 332

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
             L R +G+ +    D    S+ L+     H +A + + +      +++  ++  +   +
Sbjct: 333 QWLQRDFGVYVVDLFDTYHASHALE--LEGHSLAFLLKYYC-----DVVTDKRYQLADWR 385

Query: 533 I--SDSQVQEHAIENSNVILQLWLLLRPKL------IVEKLLHVYERLDKPMIDVVSQME 584
           I     ++  +A  +++ +L ++  +R +L          L+HV   L++  +  ++  +
Sbjct: 386 IRPLPKEMVHYARMDTHYLLYIFDRMRNELLNKSNPETHNLMHV--TLERSGLTSLNTYQ 443

Query: 585 ITGIQID-------QDLLKQVSAEISKNLLSLEENIYD 615
                 D       + LL ++    ++  L++ + I++
Sbjct: 444 KAPYCKDGLSPNGWRSLLNRLKISFNEENLAVFKAIHE 481


>gi|317374936|sp|C6HQJ2|FEN1_AJECH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 395

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 22/190 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   SP    + T
Sbjct: 141 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP +G  TA  L++++
Sbjct: 196 FSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI---TIPLEHLILEDCN 268
           G+LE ++       +KK    I E     + +R+L     D  +     P      E  +
Sbjct: 254 GSLEQVVEAIKSDPKKKYT--IPEDWPY-KEAREL---FFDPDVRNADHPDCDFKWEAPD 307

Query: 269 GPRLISFLKA 278
              L+ FL  
Sbjct: 308 VEGLVKFLVE 317


>gi|154286840|ref|XP_001544215.1| flap endonuclease [Ajellomyces capsulatus NAm1]
 gi|317374874|sp|A6QV55|FEN1_AJECN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|150407856|gb|EDN03397.1| flap endonuclease [Ajellomyces capsulatus NAm1]
          Length = 395

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I+    EA+   A         G      S D D +   SP    + T
Sbjct: 141 CKKLLKLMGVPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP +G  TA  L++++
Sbjct: 196 FSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E     + +R+L           P      E  +   
Sbjct: 254 GSLEQVVEAIKSDPKKKYT--IPEDWPY-KEARELFFDPDVRKADHPDCDFKWEAPDVEG 310

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 311 LVKFLVE 317


>gi|149201444|ref|ZP_01878419.1| exonuclease, putative [Roseovarius sp. TM1035]
 gi|149145777|gb|EDM33803.1| exonuclease, putative [Roseovarius sp. TM1035]
          Length = 203

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 65/195 (33%), Gaps = 24/195 (12%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  +     +   + +S  D                  H  
Sbjct: 7   QNDLPDGLDLGPVVAIDCETMGLHPHRDRLCVVQLSGGDGH---------------AHLV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q S G+ T        L +  EN   LK+ H  ++D   +   +G          + S +
Sbjct: 52  QVSKGQTTAPN-----LARLLENPDVLKLFHFGRFDIAAMQNAFGALAAPVYCTKIASKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H +  + Q+ L+    +I K ++SS        +   ++A  +   + +L   
Sbjct: 107 IRTYTDRHGLKYLLQELLNI---DISKQQQSSDWGADSLSAAQLDYAASDVLYLHRLRDE 163

Query: 556 LRPKLIVEKLLHVYE 570
           L  +LI E  + + +
Sbjct: 164 LNARLIREGRMELAQ 178


>gi|20094004|ref|NP_613851.1| flap endonuclease-1 [Methanopyrus kandleri AV19]
 gi|28380017|sp|Q8TXU4|FEN_METKA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|19886972|gb|AAM01781.1| 5'-3' exonuclease [Methanopyrus kandleri AV19]
          Length = 348

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 81/222 (36%), Gaps = 37/222 (16%)

Query: 81  KANRPKIPEM---LLPQLPLV--------RLATQAFGIPAIEIQGFEADDIIATYTYIAE 129
           K  R K  E       Q+  +        +      GIP ++    E +   A      +
Sbjct: 104 KLRRAKTKEEREKYARQVARLDESLVEDAKRLLDLMGIPWVQAPS-EGEAQCAYMARCGD 162

Query: 130 -----KEGFAVTIISTDKDLMQLV------SPTTCLYDTVKEEKIDIEHVIKKWGIP-PE 177
                 + +   +  + + +  +        P T     VK E + +E V+ + G+   E
Sbjct: 163 VWATGSQDYDSLLFGSPRLVRNITIVGKRKHPHTGEIIEVKPEIMRLEDVLDQLGLESRE 222

Query: 178 KMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++V L  L G   D  P G+PGIG K A  L+++YG+L         +K       I  +
Sbjct: 223 QLVDLAILLG--TDYNPDGVPGIGPKRALQLIRKYGSL-------DELKDTDIWPKIERH 273

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
                   KL  L  +  +T   E L  ++ +   L+ FL  
Sbjct: 274 LPVEP--EKLRRLFLEPEVTDDYE-LDWDEPDEEGLVEFLVE 312


>gi|194756700|ref|XP_001960614.1| GF13444 [Drosophila ananassae]
 gi|317374888|sp|B3MDA3|FEN1_DROAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|190621912|gb|EDV37436.1| GF13444 [Drosophila ananassae]
          Length = 388

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 84/279 (30%), Gaps = 54/279 (19%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      ++         R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGKPPDLKSGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +   +  G+P +E    EA+   A   
Sbjct: 109 KALKAATEAGDDAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYVEAPC-EAEAQCAALV 167

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
                 G      + D D +   S     Y T  E      ++   E ++   G+   + 
Sbjct: 168 K----AGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYEKLLDGLGVNNREF 223

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L G   D    I GIG K A  L+  Y ++E IL N    K     EN       
Sbjct: 224 IDLCILLG--CDYCESIKGIGPKRAIELINNYRDIETILDNLDTSK-YTVPENW------ 274

Query: 240 ARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
              + K+       P     +   L   + +   L+ FL
Sbjct: 275 ---NYKIARELFIEPEVANADAIELKWTEPDEEGLVKFL 310


>gi|288964713|gb|ADC79470.1| hypothetical protein [Staphylococcus aureus]
          Length = 369

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 102/254 (40%), Gaps = 31/254 (12%)

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T R++T  SL  T T R+ +   N+Q +P        +++  +    KK+ + D+   E 
Sbjct: 122 TNRLYTQLSLIGTRTHRITTKRFNVQGLPK------LVQQTILPSQFKKVYTIDFKSFEP 175

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS-IIYGISP 814
            + A++ +   L     +   ++  +  ++       +S + R   K       ++G   
Sbjct: 176 SVAAYMTQDEQLIDYLNHEEGLYDALLRDL------SLSKEKRVSVKRAFIGSFLFGGRY 229

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
                ++    SE      +   +F  + E+    K  V +   + T +G          
Sbjct: 230 SSSKFKINQEVSEINWL--QVMSKFKKVIEF----KEQVEKYKTMPTPYGIE-------- 275

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               +      + +   +Q  A+ I +  ++ V+K+  + K+  K+++ IHD ++ E  +
Sbjct: 276 --HDMSAFQGSSIMAIYVQTVASYIFKYILLEVYKAQCEQKM-FKIIVPIHDAIMIECND 332

Query: 935 EEITT-ASQIIVHS 947
           +EI    +Q++  +
Sbjct: 333 KEIAQSVAQLMKDT 346


>gi|86136835|ref|ZP_01055413.1| exonuclease, putative [Roseobacter sp. MED193]
 gi|85826159|gb|EAQ46356.1| exonuclease, putative [Roseobacter sp. MED193]
          Length = 204

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 73/214 (34%), Gaps = 25/214 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   I +S  D                + H  
Sbjct: 7   QNDLPDDLKLGPVVAIDCETMGLNPHRDRLCVIQLSDGDG---------------NAHIV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYV 495
           Q + G+          L    E+   LK+ H  ++D   + H +G          + S +
Sbjct: 52  QVAKGQTEAPN-----LCAMLEDPETLKLFHFGRFDIAAMYHAFGALTAPVYCTKIASRL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H + ++ Q+ +     +I K ++ S    K+      ++A  +   + +L   
Sbjct: 107 VRTYTDRHGLKNLTQELIGV---DISKQQQMSDWGAKVLTEAQLDYAASDVLYLHRLREA 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           L  +L  E  + + +      + + +++++ G  
Sbjct: 164 LNKRLEREGRMEMAQAC-FDFLPMRAKLDLAGWP 196


>gi|260431736|ref|ZP_05785707.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415564|gb|EEX08823.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
          Length = 204

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 69/213 (32%), Gaps = 25/213 (11%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 L+     +    T  ++    +   I +S  D                  H  Q
Sbjct: 8   NDLPDGLDLGPVVAIDCETMGLNPHRDRLCVIQMSGGDGHS---------------HIVQ 52

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVL 496
              G+          L    EN   LK+ H  ++D   L H +G          + S ++
Sbjct: 53  VEKGQTEAPN-----LCAMLENPEVLKLFHFGRFDIAALYHAFGALAAPVYCTKIASRLV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H + ++ Q+ L     +I K ++ S    +       ++A  +   + QL   L
Sbjct: 108 RTYTDRHGLKNLCQELLGI---DISKQQQMSDWGAETLTEAQLDYAASDVLYLHQLRAAL 164

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +L  E    + +      + + +++++ G  
Sbjct: 165 DARLEREGRTEMAQAC-FDFLPMRARLDLAGWP 196


>gi|183220183|ref|YP_001838179.1| ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910303|ref|YP_001961858.1| ribonuclease D-like [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167774979|gb|ABZ93280.1| Ribonuclease D-related [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778605|gb|ABZ96903.1| Ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 212

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 70/203 (34%), Gaps = 24/203 (11%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           ++     + + +  +     +       ++    +   + IS    K             
Sbjct: 12  VLQGDLNEDFFEAFKKDDRLAVDCEMMGLNPRRDRLCVVQISDSKNKV------------ 59

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
                   +  +    ++   +++K FE++   KI H  + D   L  R GI ++     
Sbjct: 60  --------ALVQILPGQKEAPHIQKLFESKEITKIFHFARMDMTFLRARLGIKVQNVFCT 111

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + S +  +    H +  + +++     + I K  +SS    KI      ++A  +   +
Sbjct: 112 KIASKLARTYTDKHGLKELIREF---FEENIDKKNQSSDWGKKILTKDQVDYASTDVRFL 168

Query: 550 LQLWLLLRPKLIVEKLLHVYERL 572
           + L  +L   +I E    + E+ 
Sbjct: 169 ISLESILTEMMIRENRFTIAEKC 191


>gi|13541391|ref|NP_111079.1| flap endonuclease-1 [Thermoplasma volcanium GSS1]
 gi|28380020|sp|Q97B98|FEN_THEVO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|14324774|dbj|BAB59701.1| FLAP endonuclease-1 [Thermoplasma volcanium GSS1]
          Length = 335

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 100/278 (35%), Gaps = 66/278 (23%)

Query: 5   NHLFLVDGSSFIY------RAFYATPLLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESI 57
           N +F +D  + +Y      R +  TPL+     G   + + G F   +  +    +    
Sbjct: 21  NQVFAIDTYNILYQLLSNVRQYDGTPLM--DSSGNVTSHLYGIFYRTVNLVENGIKP--- 75

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ------------------LPLV- 98
                 +FD      +N      +  + K    L                      P + 
Sbjct: 76  ----IFVFDGKPSPLKNRTLEIRQLAKEKAKAELEEAISRGEENLKQYYSRINYITPQIV 131

Query: 99  ---RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS------ 149
              +      GIP ++       +  A+Y    + +G    +IS D D +   +      
Sbjct: 132 NDTKELLTYMGIPYVDAP--SEGEAQASYMTRKDADG----VISQDYDCLLFGAKKILRN 185

Query: 150 ---------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIG 200
                    P   +Y TV  E + ++ V+KK GI  ++++ +  L G   D   GI GIG
Sbjct: 186 FAIYGRRKVPRKNVYRTVYPEYVMLDEVLKKNGINQDQLIEIGILVG--TDFNEGIKGIG 243

Query: 201 YKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            K A  L+++ GN++ +L      K  K  EN+ E  +
Sbjct: 244 AKKALALIKKEGNIKAVLN-----KIGKNIENLDEIID 276


>gi|124023956|ref|YP_001018263.1| ribonuclease D [Prochlorococcus marinus str. MIT 9303]
 gi|123964242|gb|ABM78998.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9303]
          Length = 212

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 66/199 (33%), Gaps = 27/199 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +      W  +     + +       +     +   + I       D +  V  + I 
Sbjct: 13  VFDGDLDSDWANRYLRASAIAVDTEAMGLIHGRDRLCLVQIC------DPADNVACVRIG 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L   ++                L+K  E     K+ H  ++D   L    GIS+      
Sbjct: 67  LGQTSAP--------------RLQKLMEATSVEKVFHFARFDVAALASGLGISVLPIFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +    H +  +  + +     E+ K  +SS    ++++SD Q+  +A  ++ 
Sbjct: 113 KVASRLARTYSPRHGLKEVVMELVGV---ELDKQAQSSDWGRVEELSDVQLA-YAANDAR 168

Query: 548 VILQLWLLLRPKLIVEKLL 566
            +L     L   L  E  L
Sbjct: 169 YLLPARQRLEMMLRREGAL 187


>gi|84489880|ref|YP_448112.1| flap endonuclease-1 [Methanosphaera stadtmanae DSM 3091]
 gi|121717163|sp|Q2NFD4|FEN_METST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|84373199|gb|ABC57469.1| flap structure-specific endonuclease [Methanosphaera stadtmanae DSM
           3091]
          Length = 328

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 105/309 (33%), Gaps = 57/309 (18%)

Query: 1   MQK-ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNM-----LWKLLQNSRK 54
           M++ E  +  VD S+ IY+         R+ DG P+  + G         +++      K
Sbjct: 16  MKELEGKILTVDASNVIYK----FLSSMRQTDGTPLRDLNGHITSHLNGIMFQTSTLIEK 71

Query: 55  ESIASHFAVIFDYPAVTFRNEI--------------YPDYKA------NRPKIPEMLLPQ 94
           +    +   +FD  A   + E               Y + K        R          
Sbjct: 72  DIKPVY---VFDGKAPDLKKETQEERINIKKESEKKYLEAKEVGDVVAARKYAARTTHLN 128

Query: 95  LPLVR---LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             +++         GIP ++ +  E +   +      +       ++S D D +Q  +  
Sbjct: 129 KEIIKSSKKLLDLMGIPYVQAR-TEGEAQASYMVSQNDAWA----VVSQDYDCLQFGATR 183

Query: 152 ------TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
                     ++   E I +E  +K+  +  E++V +  L G   D   G+ GIG K   
Sbjct: 184 MIRNLKLSKSNSKNLELISLEKTLKELNLTREQLVDVAMLVG--TDFNKGVYGIGAKKGI 241

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV---MLRTDVPITIPLEHL 262
            L+ +YG LE  L + +   +    E I E      L+  +V    +    P    L   
Sbjct: 242 KLIHKYGTLEKALESLNETME-VDAELIRE----IFLNPNVVHNYTIEFKRPKKSQLLDF 296

Query: 263 ILEDCNGPR 271
           +  + +   
Sbjct: 297 LCGEHDFDE 305


>gi|71023659|ref|XP_762059.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
 gi|74699231|sp|Q4P1V1|FEN1_USTMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|46101624|gb|EAK86857.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
          Length = 374

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 22/187 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTY--IAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
           VR   +  GIP +     EA+   A           G      S D D +   +P    +
Sbjct: 142 VRHLLKLMGIPCVIAPS-EAEAQCAELARAGKVYAAG------SEDMDTLTFGTPILLKH 194

Query: 156 DTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
            T  E+K      +D+   ++   +   + + L  L G   D +  I GIG KTA  L++
Sbjct: 195 LTASEQKKLPVHQVDLAKALEGLQMTMAQFIDLCILLG--CDYLDPIKGIGPKTALKLIR 252

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           E+  LEN++ +     +K  +  I ++      +RK+     DV   + L  L  E  + 
Sbjct: 253 EHKTLENVVHHLKEDGKKSVQ--IPDHWPFQE-ARKIFESP-DVQKGVDL-DLKWEAPDV 307

Query: 270 PRLISFL 276
             ++ FL
Sbjct: 308 EAMVKFL 314


>gi|163745220|ref|ZP_02152580.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161382038|gb|EDQ06447.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 204

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 25/214 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  +     +   + +S  D                  H  
Sbjct: 7   QNDLPDDLDLGPMVAIDCETMGLHPHRDRLCVVQLSGGDGH---------------AHLV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q + G+          L    EN H LK+ H  ++D   +   +G +        + S +
Sbjct: 52  QIAKGQTEAPN-----LCALLENPHVLKLFHYGRFDIAAMLNAFGATAAPVYCTKIASRL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H +A + Q+ LS    +I K ++SS    K       ++A  +   + +L   
Sbjct: 107 IRTYTDRHGLAKLCQELLSV---DISKQQQSSDWGAKELTQAQIDYAASDVLYLHRLRDE 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           L  +LI E  + + +      + + +++++ G  
Sbjct: 164 LNKRLIREGRMDMAQAC-FDFLPMRARLDLEGWP 196


>gi|262368015|pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
            Holoenzyme
 gi|262368018|pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
            Holoenzyme
          Length = 1172

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 108/381 (28%), Gaps = 108/381 (28%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 726  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 785

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA-----HIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I A     H A +  
Sbjct: 786  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 845

Query: 767  LYQVFE--------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII--------- 809
                             D+H   A  +            R HAK  N+  I         
Sbjct: 846  CTAFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFAE 896

Query: 810  -------------------------------YGISPFR--LATQLRIPRSEAA------- 829
                                           Y +S     L  +L +P            
Sbjct: 897  RLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISLQ 956

Query: 830  --DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI-------- 879
                ++R   R     ++ E       + G    +F +       + P++ +        
Sbjct: 957  DLRKVQRETARKSQWKKW-EVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRA 1015

Query: 880  ------RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
                  +     + +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1016 LEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1075

Query: 934  EEEITTAS------QIIVHSM 948
            EE+   A+       ++   M
Sbjct: 1076 EEDRYRAALALQITNLLTRCM 1096


>gi|300021932|ref|YP_003754543.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523753|gb|ADJ22222.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
          Length = 205

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 26/174 (14%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +    T  ++    +   + +S  D           +  D   + + +           
Sbjct: 23  IAIDTETMGLNPHRDRLCLVQLSGGDGT------AHLVKFDGKSYDAPN----------- 65

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASI 508
              LK    +   LKI H  ++D  VL  Y G+         + S +  +    H +  +
Sbjct: 66  ---LKALLADPKSLKIFHFARFDVAVLEHYLGVVTSPIYCTKIASKLARTYTDRHGLKDL 122

Query: 509 AQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
             + L     EI K ++SS     ++SDSQ + +A  +   +  L   L   L 
Sbjct: 123 VGEILGI---EISKQQQSSDWGAAELSDSQ-RSYAANDVLHLHALKTRLDEMLA 172


>gi|221485037|gb|EEE23327.1| flap endonuclease-1, putative [Toxoplasma gondii GT1]
          Length = 552

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 81/253 (32%), Gaps = 61/253 (24%)

Query: 11  DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV 70
           DG+SF                G   + IAG   ML + ++   +     +   +FD    
Sbjct: 48  DGNSF---------GNFTNDAGDCTSHIAG---MLNRAIRLLEQGVRPVY---VFDGKPP 92

Query: 71  T-------FRNEIYPDY-----KANRPKIPEMLLPQ-----------LPLVRLATQAFGI 107
                    R E+         KA      E L  Q              V+   +  G+
Sbjct: 93  ELKSGELAKRRELRESAQEAAEKAREEGNVEELRKQIVRSVRVSKQHNEDVKRLLRLMGL 152

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTI-ISTDKDLMQLVSPTTCLYDTVKEE----- 161
           P +E    EA+   A  T         V    + D D +   +       T  E      
Sbjct: 153 PVVEAPC-EAEAQCAELTK-----NRKVWATATEDADALTFGATRLIRNLTFGERSSGSG 206

Query: 162 ---------KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                     ID+  ++++     E+ +    L G   D    + G+G KTA  L++E+G
Sbjct: 207 ASATASGILVIDLPTLLEELQFSQEQFIDFCILCG--CDYCGTLKGVGAKTAYSLVKEHG 264

Query: 213 NLENILINASRIK 225
           ++E IL      K
Sbjct: 265 SIEKILEVVDPEK 277


>gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 74/220 (33%), Gaps = 28/220 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I +     +  + L      +    T  +     +   + I+    +             
Sbjct: 8   ICDEDLTPEVAEALAGETLLAVDTETMGLIPQRDRLCVVQIANAAGE------------- 54

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
             V   + S G          +L +   + +  KI H  ++D  +L    GI        
Sbjct: 55  --VVLLRLSRGVKQAP-----HLARLLTDPNIEKIFHYARFDLAMLRYHLGIQAWPVFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSN 547
            + S +  +  S H +  +  +       E+ K+ +SS    +  +S  Q+ E+A  +  
Sbjct: 108 KIASKLARTYTSKHSLKDVVGELCGV---ELNKTAQSSDWGNVQALSPEQL-EYAANDVR 163

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            ++ +   L   L  E+   + +R     +  + ++++ G
Sbjct: 164 YLIPVRHKLAQMLQREERWELAQRC-FQHLPTLVELDLLG 202


>gi|119622451|gb|EAX02046.1| polymerase (DNA directed), gamma, isoform CRA_b [Homo sapiens]
          Length = 1168

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 109/368 (29%), Gaps = 102/368 (27%)

Query: 666  PIIKNILEWRQLSK-IKSTYADSLPNHINKRTQRVHTFYS-------------LASTMTG 711
             I K I  WR   K I S     LP     R    H  Y               A T+T 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAILPQVVTAGTITR 852

Query: 712  RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP 766
            R         +      +G +++    +PP   L+ AD    EL I      AH A +  
Sbjct: 853  RAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 912

Query: 767  LYQVF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR 816
                F             D+H   A  +            R HAK  N+  IYG   PF 
Sbjct: 913  CT-AFGWMTLQGRKSRGTDLHSKTATTV---------GISREHAKIFNYGRIYGAGQPFA 962

Query: 817  ----LATQLRIPRSEAADYIKRYFHRFPGIHEY--------------------------- 845
                +    R+ + EAA+  ++ +    G+  Y                           
Sbjct: 963  ERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISL 1022

Query: 846  ------------------IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN-INERA 886
                               E       + G    +F +       + P++ +      RA
Sbjct: 1023 QDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRA 1082

Query: 887  AINAPIQ-------------GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
               + +Q              SA D     ++++    E+  +  +  + IHDE+ + V 
Sbjct: 1083 LEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVR 1142

Query: 934  EEEITTAS 941
            EE+   A+
Sbjct: 1143 EEDRYRAA 1150


>gi|308504826|ref|XP_003114596.1| CRE-CRN-1 protein [Caenorhabditis remanei]
 gi|308258778|gb|EFP02731.1| CRE-CRN-1 protein [Caenorhabditis remanei]
          Length = 382

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 75/215 (34%), Gaps = 27/215 (12%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             Q   V+      GIP +E    EA+   A      +  G A    + D D +   S  
Sbjct: 135 KQQNEDVKQLLGLMGIPVVEAPC-EAEAQCAHLVKAGKVFGTA----TEDMDALTFGSCV 189

Query: 152 TCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
              +    E      ++  +  ++++  +  E+ + L  L G   D    I G+G K A 
Sbjct: 190 LLRHLLAPESKKIPIKEFHLARILEEMKLTEEEFIDLCILLG--CDYCGTIRGVGPKRAV 247

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
            L+ +Y N+E IL N    K     +   + A    L       + DV     +E L  +
Sbjct: 248 ELINQYKNIETILENIDLTKYPPPEDWPYKRARELFL-------QPDVTKGEEIE-LTWK 299

Query: 266 DCNGPRLISF------LKALEFTKLINRVATTYDC 294
           + +   ++ F               + R+  + + 
Sbjct: 300 EPDVEGIVRFMCGDKNFSEERIRSALTRMQKSRNA 334


>gi|83766314|dbj|BAE56457.1| unnamed protein product [Aspergillus oryzae]
          Length = 1066

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 89/270 (32%), Gaps = 32/270 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +     FG+P I     EA+   A    +   +G    II+ 
Sbjct: 793  KKDRRDADEVSQIMISECQQLLTLFGLPYITAP-MEAEAQCAELVALGLVDG----IITD 847

Query: 141  DKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D+              + + ++      + K++ +   K++    L G   D   GIP
Sbjct: 848  DSDIFLFGGTRVYKNMFNQGKFVECYLTSDLEKEYALHRRKLISFAHLLG--SDYTEGIP 905

Query: 198  GIGYKTAALLLQEYGNLENILI---------NASRIKQKKRRENILEYAETARLSR---- 244
            GIG  TA  +L E+ NLE             N S  +     +   + A    LS     
Sbjct: 906  GIGPVTALEILTEFSNLEEFRDWWTQVQMGMNLSDGEHAAFYKKFRKQASKIFLSPSFPN 965

Query: 245  -KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
             ++ +   +  +            +   L +F        L+  +  + +     + PV+
Sbjct: 966  SQVDVAYLEPEVDSDPSPFQWGVPDLHGLRNF--------LMATIGWSQERTDEVLVPVI 1017

Query: 304  LDINTTENKGIAIETEIDRDTTIKTSQFSS 333
             D+N  E +G                 F+ 
Sbjct: 1018 RDMNRREQEGTQSNITAFFQGPQGAGAFAP 1047


>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 31/266 (11%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +    +++  +T + + K + + V KL+ +   +  +                     
Sbjct: 21  EPVRPADVDDTPFTLVEDLKGLTELVNKLKDVNEFAVDLE-------------------- 60

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                SF+  T  + +S  +         L   I SYLK+ F++    K+ H    D + 
Sbjct: 61  HNQYRSFQGLTCLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMW 120

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R + + +    D    S VL   R+S  +  +   +   T  +I    +++    +  
Sbjct: 121 LQRDFRVYVCNLFDTGQASRVLQMERNS--LEHLLHHFCGVTANKIY---QNADWRSRPL 175

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH--VYERLDKPMIDVVSQMEITGIQIDQ 592
             ++ ++A E+++ +L ++ L+R +L  E      +   + K   D+  Q+    +  D+
Sbjct: 176 SDEMIKYAREDTHYLLYIYDLMRLRLQRESTSENDLLLEVQKRSNDICLQLYEKELLTDK 235

Query: 593 DLLKQ---VSAEISKNLLSLEENIYD 615
             L        E++   L++   ++ 
Sbjct: 236 SYLHIYGLQEHELTAAQLAVVSALHQ 261


>gi|37522692|ref|NP_926069.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35213694|dbj|BAC91064.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
          Length = 208

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           S L+K  E    +K+ H  ++D  +L  + GI ++      + S +  +    H +  + 
Sbjct: 67  SQLQKVLEAPAVIKLFHYARFDVAMLRHHLGIRVQPIVCTKVASKLARTYSPRHGLKDLV 126

Query: 510 QKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            + +     E+ KS +SS    + ++S+ Q+  +A  +   ++  W  L   L  E    
Sbjct: 127 LETVGV---ELDKSAQSSDWGAVLELSEEQL-RYAANDVRYLIPAWRKLETMLRREGRFE 182

Query: 568 VYERL 572
           +  R 
Sbjct: 183 LARRC 187


>gi|83855386|ref|ZP_00948916.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83941910|ref|ZP_00954372.1| exonuclease, putative [Sulfitobacter sp. EE-36]
 gi|83843229|gb|EAP82396.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83847730|gb|EAP85605.1| exonuclease, putative [Sulfitobacter sp. EE-36]
          Length = 204

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 72/214 (33%), Gaps = 25/214 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L      +    T  +     +   + +S  D                + H  
Sbjct: 7   QNDLPDGLNLGPMVAIDCETMGLHPHRDRLCVVQLSGGDG---------------NAHLV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q + G+          L    E+ H LK+ H  ++D   L   +G          + S +
Sbjct: 52  QIAKGQTEAPN-----LCALLEDPHVLKLFHYGRFDIAALLNTFGAKAAPVYCTKIASRL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H +A + Q+ LS    +I K ++SS    +       ++A  +   + +L  +
Sbjct: 107 VRTYTDRHGLAKLCQELLSV---DISKQQQSSDWGAETLTKAQIDYAASDVLHLHKLRDV 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           L   LI E  + + +      +   +Q+++ G  
Sbjct: 164 LNQMLIREGRIELAQAC-FEFLPTRAQLDLDGWP 196


>gi|84684593|ref|ZP_01012494.1| exonuclease, putative [Maritimibacter alkaliphilus HTCC2654]
 gi|84667572|gb|EAQ14041.1| exonuclease, putative [Rhodobacterales bacterium HTCC2654]
          Length = 203

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 69/212 (32%), Gaps = 25/212 (11%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
                L+     +    T  ++    +   + +S  D                  H  Q 
Sbjct: 9   DLPDGLDLGPVVAIDCETMGLNPHRDRLCVVQMSGGDGH---------------AHMVQV 53

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD 497
             G+          L     + + LKI H  ++D   L   +G+         + S ++ 
Sbjct: 54  ERGQTEAPN-----LTAMLTDPNVLKIFHFGRFDIAALLNAFGVVTAPVYCTKIASKLIR 108

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           +    H + ++ ++ L   R +I K ++ +    +       ++A  +   + +L   L 
Sbjct: 109 TYTDRHGLKTLLEEIL---RIDISKYQQQTDWGARELTEAQLDYAASDVLYLHRLREKLD 165

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            +L  E    + +      +   +Q+++ G  
Sbjct: 166 GRLAREGRAELAQAC-FDFLPARAQLDLAGWP 196


>gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 906

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 77/210 (36%), Gaps = 28/210 (13%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + L    +++  +T + + + ++  V KL++    +  +                     
Sbjct: 254 EPLKPPALDDTPFTFVEDRRTLEVLVTKLKSATEFAVDLE-------------------- 293

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                SF+  T  + +S  T         L   +   L++ F++    K+ H    D + 
Sbjct: 294 HNHYRSFQGLTCLMQISTRTEDFIVDTLKLRNCLGENLREVFQDPTKKKVMHGAGRDIIW 353

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R +GI +    D    S +L   R+S       +  L Y           S       
Sbjct: 354 LQRDFGIYVCNLFDTGQASRILQMDRNS------LEHLLQYFCGVTANKEYQSADWRLRP 407

Query: 535 D-SQVQEHAIENSNVILQLWLLLRPKLIVE 563
              ++ ++A E+++ +L ++ L+R +L+ E
Sbjct: 408 LPDEMTKYAREDTHYLLYIYDLMRLRLVNE 437


>gi|298706804|emb|CBJ29727.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 476

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 110/406 (27%), Gaps = 76/406 (18%)

Query: 22  ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYK 81
               +     G   + I G   M  + ++   K     +    FD      +        
Sbjct: 52  GQSQMLTNEAGEVTSHIQG---MFNRTIRMLSKGVKPCYI---FDGKPPQLKGGELAKRT 105

Query: 82  ANRPKIPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEAD 118
           A R K    L                              +      G+P +     EA+
Sbjct: 106 AKRAKAEAELKVATEADDKNDVDKFSKRLVRVTRDHNEDCKKLLSLMGVPVVTAPS-EAE 164

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWG 173
              A        EG      + D D +   +P      T         ++D + +++   
Sbjct: 165 AQCAALAR----EGVVYGTATEDMDALTFQTPKLLRRMTFSGSNQPILEVDYQKLLQGLE 220

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
           +  EK V L  L G   D    I GIG K A  L++++G +E I+ +    K     + +
Sbjct: 221 LSHEKFVDLCVLCG--CDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPVPDDWL 278

Query: 234 L--EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291
              E AE  + +R+    R                          K     +     A T
Sbjct: 279 EPAERAERRKQARQEAKAR--------------------------KEARAKEEAKVKAET 312

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL-------SDQTSKINSE 344
            + +A + E V      +++     +T     +  K +   S            S+   +
Sbjct: 313 ANPEAVSEEDVQQKEGDSDSDKAKADTPDHGVSVAKEAADVSAKRERETEDAAESEQEMD 372

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
            TP      R   L         Y       D    ++ L      
Sbjct: 373 DTPPMYRQARGLFLKPEVEPAGEYKLKWTDPDEPGLIKFLVEEKGF 418


>gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 206

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 24/178 (13%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            + +    T  +  +  +   + +S+ D   D                 Q + G+N+   
Sbjct: 20  DAIAVDTETLGLQPYRDRLCVVQLSSGDGTAD---------------IIQIAKGQNSAPN 64

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                L K  E++   KI H  ++D  +L   +GI         + S +  +    H + 
Sbjct: 65  -----LVKLLEDKAITKIFHFGRFDLAILAHTFGIMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            I  + L+     I K ++SS    +       E+A  +   + +L  +   +L  E+
Sbjct: 120 EICSELLNVN---ISKQQQSSDWATETLSRAQIEYAASDVLYLHRLKSVFETRLKREE 174


>gi|297379646|gb|ADI34533.1| DNA polymerase I [Helicobacter pylori v225d]
          Length = 227

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 70/199 (35%), Gaps = 36/199 (18%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ-------------- 113
              +FR ++   YK  R +  E         +   +   I  +E                
Sbjct: 16  GRESFRYQLCDHYKQKRHQFDENF-------KALLRTLKIAIVEKYPLKKGARIQGEHCF 68

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            +EADDII+ Y     K+     I S DKD+  L S     ++       ++      + 
Sbjct: 69  EYEADDIISFYKK---KDPKNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF- 122

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233
                    Q + GD  DNI G+ GIG       L E      +      I+  K +E++
Sbjct: 123 -----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDL 175

Query: 234 --LEYAETARLSRKLVMLR 250
              E  E A L+ +LV + 
Sbjct: 176 SDSEAKEKALLNMRLVNMH 194


>gi|228475529|ref|ZP_04060247.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|228270311|gb|EEK11746.1| conserved hypothetical protein [Staphylococcus hominis SK119]
          Length = 378

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 107/285 (37%), Gaps = 38/285 (13%)

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732
            W +L K  +     L + I+   Q+++T  SL  T T R+ +   N+Q +P       +
Sbjct: 112 HWEKLYKNFNA----LESAIDG-NQKLNTNISLIGTRTHRITTRSFNVQGLPK------E 160

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792
           +++  +     K+   D+   E  ++A++A    L +    S  ++  +      ++   
Sbjct: 161 VKQLILPIQFNKVFMIDFKAFEPSVVAYLADDDHLKEYLNGSQGLYDTL------LDNLS 214

Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK-N 851
           +    R+  K            + ++ + ++ +  + D   +   +F  + +  E+    
Sbjct: 215 LPETHRKFVKRAFIGSFLFGGNY-MSNKFKLNQYISEDEWNKAMSKFSNVIKLKEQIDNK 273

Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911
            +    Y  T   +  H   I                   +Q +++ I +  +  V++  
Sbjct: 274 KIMTMPYGITHDMKHCHGSSIMG---------------LYVQTASSYIFKNILWEVYQHQ 318

Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956
            D +   +++L IHD ++ E   +E    ++ +   ME +     
Sbjct: 319 CDQE-DFRIMLPIHDAIMIECNTDE---VAERVRQLMETSANHLF 359


>gi|260798636|ref|XP_002594306.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
 gi|317374877|sp|C3ZBT0|FEN1_BRAFL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|229279539|gb|EEN50317.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
          Length = 380

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 23/186 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +      GIP ++    EA+   A            V    + D D++   +     + 
Sbjct: 141 CKKLLTLMGIPYVDAPC-EAEAQCAELAKKG-----KVYAAGTEDMDVLTFGTNIMLRHL 194

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E      ++   + ++ +  +  ++ + L  L G   D    I GIG K A  L+++
Sbjct: 195 TFSEARKMPIKEYYYDRLLAELDLTQDQFIDLCILLG--CDYCDSIRGIGPKRAIELIRQ 252

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           Y ++E IL +    K     +      + A   RKL       P       L   D +  
Sbjct: 253 YKSIEEILKHIDTKKFPVPEDW---PYDQA---RKLFKEPEVTPADQ--VELKWVDPDEE 304

Query: 271 RLISFL 276
            L+ ++
Sbjct: 305 GLVQYM 310


>gi|262276742|ref|ZP_06054535.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114]
 gi|262223845|gb|EEY74304.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114]
          Length = 206

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 23/193 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L+   S +       ++    K   + +   D  D           +             
Sbjct: 17  LKNASSIAIDGEFSGLNPLTDKLHLLQLC--DGSDFVHLVKFEGKYNAPN---------- 64

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSS 502
                    LK+  EN    KI H  + D   L ++  I +    D  + S +       
Sbjct: 65  ---------LKEILENNKIKKIFHFGRADLAFLKQHLDIHVTNIFDTKIGSKISRKFSPH 115

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           H +  + +  ++    +  ++      I++ S+ Q+  +A ++   + ++   L   L  
Sbjct: 116 HGLKDLCRDLININLSKEYQTSDWGKKIEEYSEDQIL-YACKDVLYLHKIKNELEKILKR 174

Query: 563 EKLLHVYERLDKP 575
           E  L + E+  K 
Sbjct: 175 ENKLELAEQCFKF 187


>gi|56695010|ref|YP_165357.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
 gi|56676747|gb|AAV93413.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
          Length = 204

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 69/213 (32%), Gaps = 25/213 (11%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 L+     +    T  ++    +   I +S  D                + H  Q
Sbjct: 8   NDLPDGLDLGPVVAIDCETMGLNPHRDRLCVIQMSGGDG---------------NTHIVQ 52

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVL 496
              G+          L    EN   LK+ H  ++D   L H +G          + S ++
Sbjct: 53  VEKGQTAAPN-----LCAMLENPEVLKLFHFGRFDIAALYHAFGALTAPVYCTKIASRLV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H + ++ Q+ L     +I K ++ S    +       ++A  +   + +L   L
Sbjct: 108 RTYTDRHGLKNLCQELLGV---DISKQQQMSDWGAETLSEAQLDYAASDVLYLHRLREAL 164

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +L  E    + +      +   +++++ G  
Sbjct: 165 DGRLAREGRADLAQSC-FDFLPTRARLDLVGWP 196


>gi|50287803|ref|XP_446331.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525638|emb|CAG59255.1| unnamed protein product [Candida glabrata]
          Length = 992

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 29/223 (13%)

Query: 74  NEIYPD-YKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132
           +EIY    K  R    E+ +  +  V+     FGIP I     EA+   A    +   +G
Sbjct: 712 DEIYAQQVKDKRDA-DEVTMDMIKDVQELLARFGIPYITAP-MEAEAQCAELVNLKLVDG 769

Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGD 188
               II+ D D+  L        +  +E    E  D E + +  G+  E M+ L  L G 
Sbjct: 770 ----IITDDSDVF-LFGGKKVYKNMFQEKNYVEYYDSEDIYQGLGLTRETMIELAQLLG- 823

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILI--NASRIKQKK----------RRENILEY 236
             D   GI G+G  ++  +L E+G+L+N     N  +  +KK           R+ +++ 
Sbjct: 824 -SDYTTGIKGMGPVSSMEILAEFGDLKNFKRWYNEGQFDKKKQEGEDKFRRDLRKKLVKN 882

Query: 237 ---AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
               +    S  +     +  +          + +   L  FL
Sbjct: 883 DIILDDDFPSVFVADSYLNPEVDHDKTPFTWANPDLDMLRQFL 925


>gi|73852488|ref|YP_293772.1| putative endonuclease [Emiliania huxleyi virus 86]
 gi|72415204|emb|CAI65441.1| putative endonuclease [Emiliania huxleyi virus 86]
          Length = 358

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 71/196 (36%), Gaps = 35/196 (17%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+      GIP ++    EA+   A Y       G A    + D D +   S     +  
Sbjct: 139 VKKMLTLMGIPVVQAPC-EAEATCAAYVKT----GKAYATATEDMDSLTFGSTYVIRHIN 193

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             ++K        + +++   GI  ++ + +  L+G   D    I GIG   A  L+QE+
Sbjct: 194 STDQKKQPTVEYSLPNILNDMGITMDQFIEICILSG--CDYTKTIKGIGPTRAYQLIQEH 251

Query: 212 GNLENILINASRIKQKKRRENI---------LEYAETARLSRKLVMLRTDVPITIPLEHL 262
             +EN+L     +K+K   E           +E                DV IT   + L
Sbjct: 252 STIENVL---DVLKKKHGEEQFSTMVPDDYPIEAVRDLF-------NNPDVDIT---QEL 298

Query: 263 ILEDCNGPRLISFLKA 278
                N   LI+FL  
Sbjct: 299 TWNTINRDALIAFLVE 314


>gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
           (ISS) [Ostreococcus tauri]
 gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
           (ISS) [Ostreococcus tauri]
          Length = 701

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 30/245 (12%)

Query: 331 FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
           F S  D   K   +  P          L     +      +     +++    LE     
Sbjct: 82  FDSYEDFERKAREDAYPAFARESGGTTLPTPMDDEHPLVVVDTEDALEELATHLEQCKEF 141

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +  +                          SFK  T  + +S            L   + 
Sbjct: 142 AVDLE--------------------HHSYRSFKGFTCLMQVSTREKDFVVDVLALRSLVR 181

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             L K F + + LK+ H    D   L + +GI +    D    + VL+       + S A
Sbjct: 182 DALGKAFADPNTLKVMHGADNDVQWLQKDFGIFVSCLFDTGQAARVLE-------LPSKA 234

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
             +L      I  ++K  +   ++     ++ ++A  +++ +L ++  L+  L       
Sbjct: 235 LAYLLQHYCGIKANKKFQLADWRVRPLTREMLDYARGDTHYLLYVYDELKKALAARGENS 294

Query: 568 VYERL 572
           +   L
Sbjct: 295 IAATL 299


>gi|220907657|ref|YP_002482968.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
 gi|219864268|gb|ACL44607.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
          Length = 217

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 65/215 (30%), Gaps = 24/215 (11%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       +    T    +    T  +     +   +                     
Sbjct: 16  VYDRDLPADTLSYFLTADRIAVDTETMGLKPQRDRLCLVQ-------------------- 55

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
           L+      +  +    +    +LK+  E+    K+ H  ++D   L     I ++     
Sbjct: 56  LAHPQGLITVIRIGQGQRSAPHLKQLLEHPGTTKVFHFARFDITTLRYHLDIWVQPLFCT 115

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + S +  +    H +  + ++       + ++S     P + +++ Q+  +A  +   +
Sbjct: 116 KIASKLARTYSPRHGLKDLIRELEGVELDKTVQSSDWGNP-NNLTEEQL-RYASNDVRYL 173

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           L     L   L  E    + +      +  ++ ++
Sbjct: 174 LAAQAKLVEMLQRENRWQLAQEC-FHCLPTLASLD 207


>gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 204

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 25/213 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L      +    T  +D    +   + +S  D                  H 
Sbjct: 6   HRNDLPDGLALGPVVAIDTETMGLDPRRDRLCVVQLSAGDGD---------------AHL 50

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
            Q   G+ +        L++   +   LK+ H  ++D   L R +G+         + S 
Sbjct: 51  VQIERGQTSAPN-----LERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  +  + +     ++ K +++S           +++A  +   + +L  
Sbjct: 106 MVRTFTDRHGLKYLLLELVGV---DVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKD 162

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            L  +L+ E  + + +R     +   +++++ G
Sbjct: 163 ELEARLLREGRMELAQRC-FDFLPTRAELDLMG 194


>gi|332559626|ref|ZP_08413948.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
 gi|332277338|gb|EGJ22653.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
          Length = 204

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 25/213 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L      +    T  +D    +   + +S  D                  H 
Sbjct: 6   HRNDLPDGLVLGPVVAIDTETMGLDPRRDRLCVVQLSAGDGD---------------AHL 50

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
            Q   G+ +        L++   +   LK+ H  ++D   L R +G+         + S 
Sbjct: 51  LQIERGQTSAPN-----LERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  +  + +     ++ K +++S           +++A  +   + +L  
Sbjct: 106 MVRTFTDRHGLKYLLLELVGV---DVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKD 162

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            L  +L+ E  + + +R     +   +++++ G
Sbjct: 163 ELEARLLREGRMELAQRC-FDFLPTRAELDLMG 194


>gi|159124202|gb|EDP49320.1| DNA excision repair protein Rad2 [Aspergillus fumigatus A1163]
          Length = 1130

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 119/362 (32%), Gaps = 41/362 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +     FG+P I     EA+   A    +   +G    II+ 
Sbjct: 786  KKDRRDADEVTQVMITECQQLLSLFGLPYITAP-MEAEAQCAELVSLGLVDG----IITD 840

Query: 141  DKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D+              + + ++      + K++ +   K++ L  L G   D   GI 
Sbjct: 841  DSDIFLFGGTRVYKNMFNQGKFVECYLTSDMEKEYALHRRKLISLAHLLG--SDYTEGIS 898

Query: 198  GIGYKTAALLLQEYGNLENILINASRIKQK--------KRRENILEYAETARL-----SR 244
            GIG  TA  +L E+ +LE      ++I+             +   + A    +     + 
Sbjct: 899  GIGPVTALEILTEFSSLEEFRDWWTQIQTGMYVPETHAAFYKKFRKTATKIFIPPTFPNP 958

Query: 245  KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            ++     +  +            +   L +F        L+  +  + +     + PV+ 
Sbjct: 959  QVDKAYLEPEVDSDPSPFQWGVPDLHGLRNF--------LMTTIGWSQERTDEVLLPVIR 1010

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP----QKLFLERLQKLSQ 360
            D+N  E +G                 F+       +   E+      Q+   +  Q  S 
Sbjct: 1011 DMNRREQEGTQSNITNFFSGPQGAGAFAPRVRSGGQSRMEKAFSRLRQQAGAKTHQSTST 1070

Query: 361  YPINNDSYTKIVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               +  +     +    +   +K +    A +   IT + DA       +++++  QK  
Sbjct: 1071 GETDAGADGSTDDQTASRHSQKKAKGRKRAQATDTITSSADA-----DGVSMASKKQKTR 1125

Query: 420  TS 421
             S
Sbjct: 1126 RS 1127


>gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana]
          Length = 578

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 28/227 (12%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
            ++ +   P+    +  +   KD+++ V KL ++   +  +                   
Sbjct: 246 EMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLE------------------ 287

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                  SF+  T  + +S  T         L   I  YL++ F++    K+ H    D 
Sbjct: 288 --HNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDI 345

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           + L R +GI +    D    S VL+     + +  + Q +   T     K  +++    +
Sbjct: 346 IWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCGVTA---NKEYQNADWRIR 400

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
               ++  +A E+++ +L ++ L+  KL ++++       D P+++V
Sbjct: 401 PLPEEMTRYAREDTHYLLYIYDLI--KLELQRMAKDDAHTDSPLLEV 445


>gi|237836211|ref|XP_002367403.1| flap endonuclease-1, putative [Toxoplasma gondii ME49]
 gi|211965067|gb|EEB00263.1| flap endonuclease-1, putative [Toxoplasma gondii ME49]
 gi|221505908|gb|EEE31543.1| flap endonuclease-1, putative [Toxoplasma gondii VEG]
          Length = 552

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 81/253 (32%), Gaps = 61/253 (24%)

Query: 11  DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV 70
           DG+SF                G   + IAG   ML + ++   +     +   +FD    
Sbjct: 48  DGNSF---------GNFTNDAGDCTSHIAG---MLNRAIRLLEQGVRPVY---VFDGKPP 92

Query: 71  T-------FRNEIYPDY-----KANRPKIPEMLLPQ-----------LPLVRLATQAFGI 107
                    R E+         KA      E L  Q              V+   +  G+
Sbjct: 93  ELKSGELAKRRELRESAQEAAEKAREEGNVEELRKQIVRSVRVSKQHNEDVKRLLRLMGL 152

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTI-ISTDKDLMQLVSPTTCLYDTVKEE----- 161
           P +E    EA+   A  T         V    + D D +   +       T  E      
Sbjct: 153 PVVEAPC-EAEAQCAELTK-----NRKVWATATEDADALTFGATRLIRNLTFGERASGSG 206

Query: 162 ---------KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                     ID+  ++++     E+ +    L G   D    + G+G KTA  L++E+G
Sbjct: 207 ASATASGILVIDLPTLLEELQFSQEQFIDFCILCG--CDYCGTLKGVGAKTAYSLVKEHG 264

Query: 213 NLENILINASRIK 225
           ++E IL      K
Sbjct: 265 SIEKILEVVDPEK 277


>gi|119637770|ref|YP_919006.1| Exonuclease [Yersinia phage Berlin]
 gi|194100492|ref|YP_002003337.1| gp6 [Yersinia phage Yepe2]
 gi|119391801|emb|CAJ70674.1| hypothetical protein [Yersinia phage Berlin]
 gi|193201225|gb|ACF15706.1| gp6 [Yersinia phage Yepe2]
          Length = 304

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 23/241 (9%)

Query: 47  KLLQNSRKESIASHFAVIFDYPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAF 105
           K   + +K    +   + F   +V +R E+  P YK NR    + +      V       
Sbjct: 66  KSYASRKKAWRDAPIVMAF-TDSVNWRKELVDPTYKENRKASRKPVGY-RAFVERVQAFE 123

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKID 164
              +I     E DD++      AE  GF    ++S DKD   +  P            + 
Sbjct: 124 DWTSILEPRLEGDDVMGIIGSGAEHFGFKKAVLVSCDKDFKTI--PNCDFLWCTTGNILT 181

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
            +     +          Q + GD  D   GIPG G  TA  L   Y           + 
Sbjct: 182 QDQTTADY------WHIYQTIKGDLTDGYGGIPGWGETTADWLENPY-----AFEQVEKT 230

Query: 225 --KQKKRRENILEYAETARLSRKL--VMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
                ++ + ++E+ +     R L   ++       +  E +I +      L    +   
Sbjct: 231 FKSGARKGQTVIEWKKVGMGDRTLWEAIVTLGAKAGMTEEEIIKQGQMARILR--FEEYN 288

Query: 281 F 281
           F
Sbjct: 289 F 289


>gi|73661352|ref|YP_300133.1| hypothetical protein SSP0043 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493867|dbj|BAE17188.1| hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 366

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 106/274 (38%), Gaps = 36/274 (13%)

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745
           D L   +N  T R++T  SL  T T R+ +   NLQ +P        ++R  +    KK+
Sbjct: 110 DRLEQALNG-TNRLYTQLSLIGTRTHRITTKNFNLQGLPK------AVQRTILPSKYKKV 162

Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            + D+   E  ++A++ + + L         ++  + +E+      ++  + R   K   
Sbjct: 163 YTVDFKSFEPSVVAYMTQDSKLIDFLNQKDGLYDALLSEL------ELQDEQRVLVKRAF 216

Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIK--RYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863
                    F        P+ +   Y+   ++        + IE  K  + ++  +   +
Sbjct: 217 IG------SFLFGGNFDSPKFKLKQYVSEVQWLDAVSQFTKVIE-LKKQIEEHKTIPMPY 269

Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
           G              +      + +   +Q  A+ I +  ++ V+K+ +  + + +++L 
Sbjct: 270 GIE----------HDMSAFQGSSIMAFYVQTVASYIFKHILLEVYKA-QCTQKSFQIILP 318

Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           IHD ++ E  +EE    +Q +   M+       N
Sbjct: 319 IHDAIMIECDDEE---TAQSVAQLMKSKANKLFN 349


>gi|19115884|ref|NP_594972.1| FEN-1 endonuclease [Schizosaccharomyces pombe 972h-]
 gi|730469|sp|P39750|FEN1_SCHPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNA
           repair protein rad2; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|2408077|emb|CAB16282.1| FEN-1 endonuclease [Schizosaccharomyces pombe]
 gi|4456854|emb|CAB36991.1| RAD2 protein [Schizosaccharomyces pombe]
          Length = 380

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 73/212 (34%), Gaps = 26/212 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYDT 157
           +   +  GIP +     EA+   A            V    S D D +   +P    + T
Sbjct: 143 KRLLELMGIPFVNAPC-EAEAQCAALAR-----SGKVYAAASEDMDTLCFQAPVLLRHLT 196

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++       +IE  +    +  E+ V L  L G   D    I G+G   A  L+++Y
Sbjct: 197 FSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLG--CDYCEPIRGVGPARAVELIRQY 254

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE-HLILEDCNGP 270
           G L+  +  A R K     +   E A    L         D  +    E  L  +  +  
Sbjct: 255 GTLDRFVKEADRSKYPIPEDWPYEDARRLFL---------DAEVLPGEEIELKWKSPDAD 305

Query: 271 RLISFL-KALEFTKLINRVATTYDCDAANIEP 301
            +I FL K   F +   ++       A+   P
Sbjct: 306 GIIQFLVKEKGFNEDRVKLGINRLEKASKTIP 337


>gi|312114054|ref|YP_004011650.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
 gi|311219183|gb|ADP70551.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
          Length = 204

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 25/221 (11%)

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
           T  +      ++   S +    T  +     +   + +S  D  +    + E    D   
Sbjct: 4   TVHLNDLPPDIDFGASVAIDTETLGLKPHRDRLCVVQLSAGDG-NAHLVQFEKGHYDAPN 62

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLM 492
                              L     N   LKI H  ++D  V+ +Y G+         + 
Sbjct: 63  -------------------LTALLVNPAVLKIFHFGRFDIAVMQQYLGVKTGPVYCTKIA 103

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           + ++ +    H +  + ++ L     E+ K +++S         +   +A  +   +  L
Sbjct: 104 AKLVRTFTERHGLKDLCRELLGV---ELSKQQQTSDWGQAKLTPEQLSYAASDVLHLHAL 160

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              L   L  E    +        +   +++++ G   D D
Sbjct: 161 KEKLDALLAREGRTELAAAC-FGFLPYRAELDLKGWHDDAD 200


>gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 786

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 94/265 (35%), Gaps = 32/265 (12%)

Query: 311 NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK 370
            K   +  E   + T++       +         Q   +  L + + +S    ++   T 
Sbjct: 175 FKDTMVNPEPVWEDTVEIIDPPYYAQPYEYEIDNQPYPEKVLTKSEPISPQDWSSTKATW 234

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +   + + + +++L+     +  +       ++     + IS  D               
Sbjct: 235 VDTVEALNKMIEELKKSEEIAVDLEHHDFRTYYGIVCLMQISNRD--------------- 279

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                 QD        ++ L+ L + F N + +K+ H    D + L R  G+ +    D 
Sbjct: 280 ------QDWIIDTLALRDELTELNEVFTNPNIVKVFHGAFMDIIWLQRDLGLYIVSLFDT 333

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSN 547
              S  L  G S   +A + + +  +       S+K  +   +I    S +  +A  +++
Sbjct: 334 YHASRAL--GLSRFSLAYLLEHYAQFKT-----SKKYQLADWRIRPLSSPMLAYARSDTH 386

Query: 548 VILQLWLLLRPKLIV-EKLLHVYER 571
            +L ++  L+ KLI  +KL  V   
Sbjct: 387 FLLYIYDQLKNKLIDSDKLRGVLHD 411


>gi|209966458|ref|YP_002299373.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209959924|gb|ACJ00561.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 204

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 23/201 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L+     +    T  ++    +   + +S  D +                H 
Sbjct: 6   HDGDLPDGLDLGPVVAIDTETMGLNPARDRLCLVQLSAGDGRC---------------HL 50

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSY 494
            Q   G           LK+   +   LK+ H  ++D  V+  Y G+         + S 
Sbjct: 51  VQFRQGAGYDAPN----LKRMLTDPGTLKLFHFARFDIAVMQAYLGVLTGPVYCTKVASK 106

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +  +    H +  + +  L     E+ K ++SS        ++  ++A  +   + ++  
Sbjct: 107 LTRTFTDRHGLKDLCRDLLGV---ELSKQQQSSDWGADELTAEQLKYAASDVLHLHEIKA 163

Query: 555 LLRPKLIVEKLLHVYERLDKP 575
            L   L  E    + E   + 
Sbjct: 164 RLDGMLAREGRTALAEDCFRF 184


>gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
          Length = 204

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 25/213 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L      +    T  +D    +   + +S  D                  H 
Sbjct: 6   HRNDLPDGLVLGPVVAIDTETMGLDPRRDRLCVVQLSAGDGD---------------AHL 50

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
            Q   G+ +        L++   +   LK+ H  ++D   L R +G+         + S 
Sbjct: 51  VQIERGQTSAPN-----LERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  +  + +     ++ K +++S           +++A  +   + +L  
Sbjct: 106 MVRTFTDRHGLKYLLLELVGV---DVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKD 162

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            L  +L+ E  + + +R     +   +++++ G
Sbjct: 163 ELEARLLREGRMELAQRC-FDFLPTRAELDLMG 194


>gi|149185091|ref|ZP_01863408.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21]
 gi|148831202|gb|EDL49636.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21]
          Length = 207

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
             +   + +   G  +    T  +     +        +   D    +    F   S + 
Sbjct: 6   HEEDLPEDVLADGPVAVDTETMGLVTIRDRL-----CVVQISDGNGDEHLVRFGPDSDYD 60

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSY 494
           + +              LK    +   LK+ H  ++D   +  Y G++        + S 
Sbjct: 61  APN--------------LKAVLGDPERLKLFHFARFDLAAIEYYLGVTAAPCYCTKIASK 106

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H + ++ ++ L    + + K+++SS     + +   +++A  +   + ++  
Sbjct: 107 MVRTFTDRHGLKNLVEELLG---ESMSKAQQSSDWGGPVLNDAQRDYAASDVRFLHRMKE 163

Query: 555 LLRPKLIVEKLLHVYE 570
            L  +L  E    + +
Sbjct: 164 ELDRRLEREGRTELAQ 179


>gi|148243178|ref|YP_001228335.1| ribonuclease [Synechococcus sp. RCC307]
 gi|147851488|emb|CAK28982.1| Ribonuclease [Synechococcus sp. RCC307]
          Length = 217

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 80/231 (34%), Gaps = 28/231 (12%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           + Q    + ++  + +     +W    +   + +       +     +   + I      
Sbjct: 1   MPQDIPASPTHFAVFDGDLSPEWFGHYKNAKALAVDTEAMGLIHGRDRLCLVQIC----- 55

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            D   +V  I I      +                LK+  E     K+ H  ++D   + 
Sbjct: 56  -DDQDRVCCIRIARGQSEAP--------------LLKELMEATGIEKVFHYARFDVAAMA 100

Query: 478 R-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKIS 534
              GI++       + S +  +    H +A++  + +     ++ K  +SS    ++++S
Sbjct: 101 SGLGIAVNPIFCTKVASRLARTYSPRHGLAAVVSELVGV---DLDKQAQSSDWGRVEELS 157

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           + Q+  +A  +   +L     L   L+ E+   + +R     I V S ++ 
Sbjct: 158 EQQLA-YAANDVRYLLPARDRLEQMLVREERWSLAQRC-FLCIPVFSDLDR 206


>gi|169839334|ref|ZP_02872522.1| hypothetical protein cdivTM_19832 [candidate division TM7
          single-cell isolate TM7a]
          Length = 42

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 1  MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCN 43
          M     L ++DG S  YR +YA P LS K DG P   + GF +
Sbjct: 1  MVHMKRLVIIDGKSVFYRGYYAMPGLSTK-DGTPTGGVFGFAS 42


>gi|170577048|ref|XP_001893862.1| DNA polymerase I family protein [Brugia malayi]
 gi|158599875|gb|EDP37305.1| DNA polymerase I family protein [Brugia malayi]
          Length = 977

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 107/349 (30%), Gaps = 65/349 (18%)

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST------YADS 687
           F KL  P+G     G   + A  LE       P ++   E+  L + ++T      Y D 
Sbjct: 554 FHKLPHPNGEHDNVGDPISKAFQLEIDEGVLWP-VRYKKEFSDLYRARNTTRFWNNYRDR 612

Query: 688 LPNHI------NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-GQKIRRAFISP 740
               +      N     +      A T+T R           P    + G  ++     P
Sbjct: 613 FQEQVTIWLDENGDEGAIAPSIIPAGTVTRRAVHKLWLTAINPKDDQMIGTNLKSMVECP 672

Query: 741 PTKKLISADYSQIELRILAHIAKIT------------PLYQVFE--NSLDIHRMVAAEIF 786
               ++ AD    E  I A +                 +       ++ D+H ++A E+ 
Sbjct: 673 EDWHIVGADVDSQEQWIAAMLGDCCVGKGTAGVTPFSNMLLAGSKSDNSDLHSVIAKEV- 731

Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT---QLRIPRSEAADYIKRYFHRFP--- 840
                      R  AK +N++ +YG      A    Q  +  ++A +   + F       
Sbjct: 732 --------GISRDKAKVLNYARLYGSGIVHAAEFLIQSGMNATKALNVSNKLFATTKGKR 783

Query: 841 ------------GIHEYIEKTKNFVRQNGYVE---TIFGRRIHYDE----INSPKSSIRN 881
                           YI+       +  YV    T F       +    +N       +
Sbjct: 784 FNFLKLNESYNDYFRWYIDNICPSKMKADYVYANGTYFLPEYRIRQGKLTLNFEDWLYES 843

Query: 882 INERAAINA---PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           +  +   N     +Q SA D     ++ +    E + +  +  L IHDE
Sbjct: 844 VWNKLRENGQDEVVQSSAVDFLHLLIVCMKWLCEIYSIKARFALSIHDE 892


>gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 204

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 74/215 (34%), Gaps = 27/215 (12%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  +     +   + +S  D                  H  
Sbjct: 7   QNDLPDGLDLGPIVAIDCETMGLHPHRDRLCVVQLSGGDGH---------------AHLV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q   G+          L    E+   LK+ H  ++D   +   +G          + S +
Sbjct: 52  QIGKGQTEAPN-----LCALLEDPEVLKLFHFGRFDIAAMQNAFGAKTAPVYCTKIASRL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWL 554
           + +    H +A + Q+ L     +I K ++SS     +++ +Q+ ++A  +   + QL  
Sbjct: 107 VRTFTDRHGLAKLCQELLG---TDISKQQQSSDWGAAQLTQAQI-DYAASDVLYLHQLRD 162

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            L   LI E  + + +      + + +Q+++ G  
Sbjct: 163 KLNAMLIREDRMDIAQAC-FDFLPMRAQLDLAGWP 196


>gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
 gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
          Length = 204

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 25/213 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L      +    T  +D    +   + +S  D                  H 
Sbjct: 6   HRSDLPDGLVLGPVVAIDTETMGLDPRRDRLCVVQLSAGDGD---------------AHL 50

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
            Q   G+ +        L++   +   LK+ H  ++D   L R +G+         + S 
Sbjct: 51  VQIERGQTSAPN-----LERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  +  + +     ++ K +++S           +++A  +   + +L  
Sbjct: 106 MVRTFTDRHGLKYLLLELVGV---DVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKD 162

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            L  +L+ E  + + +R     +   +++++ G
Sbjct: 163 ELEARLLREGRMELAQRC-FDFLPTRAELDLMG 194


>gi|70991587|ref|XP_750642.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
 gi|66848275|gb|EAL88604.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
          Length = 1130

 Score = 62.0 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 119/362 (32%), Gaps = 41/362 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +     FG+P I     EA+   A    +   +G    II+ 
Sbjct: 786  KKDRRDADEVTQVMITECQQLLSLFGLPYIIAP-MEAEAQCAELVSLGLVDG----IITD 840

Query: 141  DKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D+              + + ++      + K++ +   K++ L  L G   D   GI 
Sbjct: 841  DSDIFLFGGTRVYKNMFNQGKFVECYLTSDMEKEYALHRRKLISLAHLLG--SDYTEGIS 898

Query: 198  GIGYKTAALLLQEYGNLENILINASRIKQK--------KRRENILEYAETARL-----SR 244
            GIG  TA  +L E+ +LE      ++I+             +   + A    +     + 
Sbjct: 899  GIGPVTALEILTEFSSLEEFRDWWTQIQTGMYVPETHAAFYKKFRKTATKIFIPPTFPNP 958

Query: 245  KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
            ++     +  +            +   L +F        L+  +  + +     + PV+ 
Sbjct: 959  QVDKAYLEPEVDSDPSPFQWGVPDLHGLRNF--------LMTTIGWSQERTDEVLLPVIR 1010

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP----QKLFLERLQKLSQ 360
            D+N  E +G                 F+       +   E+      Q+   +  Q  S 
Sbjct: 1011 DMNRREQEGTQSNITNFFSGPQGAGAFAPRVRSGGQSRMEKAFSRLRQQAGAKTHQSTST 1070

Query: 361  YPINNDSYTKIVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDD 419
               +  +     +    +   +K +    A +   IT + DA       +++++  QK  
Sbjct: 1071 GETDAGADGSTDDQTASRHSQKKAKGRKRAQATDTITSSADA-----DGVSMASKKQKTR 1125

Query: 420  TS 421
             S
Sbjct: 1126 RS 1127


>gi|312436370|gb|ADQ83179.1| exonuclease [Yersinia phage Yep-phi]
          Length = 304

 Score = 62.0 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 24/245 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAG-FCNMLWKLLQNS---RKES 56
           + +  + ++DG   +++A  A+ + ++   D   +    G   N+L   +++    +K  
Sbjct: 16  KSDKGVLVMDGDWLVFQAMAASEVETQWDDDIWSLECDHGKAWNILVDSIKSYAGRKKAW 75

Query: 57  IASHFAVIFDYPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
             +   + F   +V +R E+  P YK NR    + +      V          +I     
Sbjct: 76  RDAPIVMAF-TDSVNWRKELVDPTYKENRKASRKPVGY-RAFVERVQAFEDWTSILEPRL 133

Query: 116 EADDIIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
           E DD++      AE  GF    ++S DKD   +  P            +  +     +  
Sbjct: 134 EGDDVMGIIGSGAEHFGFKKAVLVSCDKDFKTI--PNCDFLWCTTGNILTQDQTTADY-- 189

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKRREN 232
                   Q + GD  D   GIPG G  TA  L   Y           +      ++ + 
Sbjct: 190 ----WHIYQTIKGDLTDGYGGIPGWGETTADWLENPY-----AFEQVEKTFKSGARKGQT 240

Query: 233 ILEYA 237
           +LE+ 
Sbjct: 241 VLEWK 245


>gi|158425216|ref|YP_001526508.1| putative phage exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158332105|dbj|BAF89590.1| putative phage exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 247

 Score = 62.0 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 69/212 (32%), Gaps = 26/212 (12%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVN------AIAGFCNMLWKLLQNSRKESIASHF 61
            L+D     Y A +A    +    G           +  F   + +++      +     
Sbjct: 4   LLIDADVVAYNAAFACEKATEWEPGYWTWHVEWDEVVQAFDAEVSRMMDTLDAGAFRLCL 63

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIP---AIEIQGFEAD 118
               D     FR  + P YK  R         + P++    + F +    A    G E D
Sbjct: 64  T---DSEG-NFRRGVDPSYKGTRS------SIRKPIILKRFKDFLVQERGAYWRPGLEGD 113

Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178
           D +       +       I+S DKD+  +             E   +  V ++     + 
Sbjct: 114 DCMGILATHPKLIPGEKVIVSIDKDMKTVPGLFIRWG----AEGASLTEVSEE---EADY 166

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
               Q LTGD  D   G PG+G K A  +L+E
Sbjct: 167 WHLYQTLTGDVTDGYKGCPGVGPKKAEAILKE 198


>gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
 gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
          Length = 207

 Score = 62.0 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 66/201 (32%), Gaps = 25/201 (12%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G  +    T  ++    +   + +S  D   D                 Q + G+     
Sbjct: 18  GPVAIDTETLGLNTMRDRLCVVQLSPGDGTADV---------------VQIAKGQTEAPN 62

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                +     +    KI H  ++D   L H +G    G     + S +  +    H + 
Sbjct: 63  -----ISALLADASKTKIFHYARFDVAALYHAFGAMTEGIFCTKIASRLTRTYTDRHGLK 117

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +A++ +     ++ K ++SS    +       ++A  +   +  +   L  +L  E  +
Sbjct: 118 DLARELVGV---DLSKQQQSSDWAVETLSPAQLDYAASDVLYLHDIMGALYKRLEREDRM 174

Query: 567 HVYERLDKPMIDVVSQMEITG 587
            +        + +  ++++ G
Sbjct: 175 DLAREC-FRFLPMRVRLDLAG 194


>gi|258566335|ref|XP_002583912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907613|gb|EEP82014.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 635

 Score = 62.0 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 105/328 (32%), Gaps = 56/328 (17%)

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE-- 353
           A   +P +   N   N   +    I R             D  + I +E +      E  
Sbjct: 143 AKLPKPQLSFNNRPNNHDSSPFRPILRQKPHAIVSLPLSPDPAAGIGTEPSEHPYAHEIR 202

Query: 354 ----------RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
                     + +     P  + S T +   + +Q  +++L+        +         
Sbjct: 203 NCRYPPSVYYKSEPQMYQPFESTSATFVNTMEGVQAMLKELKCAKEIGIDLE-------- 254

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                         D  S+      + +S              +E L  L + F N   +
Sbjct: 255 ------------HHDTHSYYGLVCLMQISTRDKDWIVDTLLPWREELQILNEVFANPQIV 302

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H    D + L R  G+ + G  D    +  L        +  +  K++++  +    
Sbjct: 303 KVLHGSSMDVIWLQRDLGLYLVGLFDTYHAAAALH--YPKKSLKFLLDKFVNFQAE---- 356

Query: 523 SRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV-----EKL---------L 566
            +K  I   ++      + ++A  +++ +L ++  LR +LI      E L          
Sbjct: 357 -KKYQIADWRVRPLLPGMFDYARSDTHYLLYIYDHLRNELIERSTPGENLIDYVQENSKE 415

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDL 594
              +R ++P+ D  +     G +ID++ 
Sbjct: 416 EALQRYERPVYDTETGQGAGGCEIDREC 443


>gi|118596590|dbj|BAF37954.1| putative flap endonuclease-1 [Sulfolobus sp. M02]
          Length = 304

 Score = 62.0 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 24/189 (12%)

Query: 99  RLATQAFGIPAIEIQG---FEADDI-IATYTYIAEKEGFAVTIISTDK--DLMQLVS--- 149
           +   +A GIP ++       EA  I I   ++    + +   +    +    + L     
Sbjct: 91  KELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLVRNLTLTGKRK 150

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+++ ++KK G+  E+++ +  + G   D  P GI G G KTA  +
Sbjct: 151 LPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVG--TDYNPDGIKGYGVKTAYRI 208

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           +++YG+LE  +     I + K   N+ E      L+ ++V  +         E+L L  C
Sbjct: 209 IKKYGSLEKAIEK-GEIPKIKVNFNVEEIR-GLFLNPQVVEPK---------ENLELAAC 257

Query: 268 NGPRLISFL 276
           +  +++  L
Sbjct: 258 DSNKILDIL 266


>gi|294867245|ref|XP_002765023.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
 gi|239864903|gb|EEQ97740.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
          Length = 407

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 86/288 (29%), Gaps = 58/288 (20%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + I+G   M+ + L+         +   +FD    + +       +  + K 
Sbjct: 58  TNAAGEVTSHISG---MVTRTLRMMEAGIKPVY---VFDGKPPSLKTGELAKRREVKKKA 111

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            E L   +                         V+      G   IE    EA+   A  
Sbjct: 112 EEDLKEAIEKGDDEGIRKAAHRSTRVTPQMNADVKKLLTMMGCCIIEAPE-EAEATCAAL 170

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCL---------------YDTVKEEKIDIEHVI 169
               +  G     ++ D D++   SP                     T    ++ +  V+
Sbjct: 171 VRYGKCYGA----VTDDMDVLTFGSPVQVKNLFNTLGSGQQGSAGKTTKPVYEMSLSTVL 226

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           ++  +  ++ +    + G   D +  I GIG   A  L+ E+ ++E +L +  + K    
Sbjct: 227 EQLDVSMDQFIDFCIMCG--CDYLDTIRGIGPNNAFKLIVEHKSIEGVLDHIDKTKFAVP 284

Query: 230 RENILEYAETARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFL 276
                     A   + +     D P +     +L     +   L  FL
Sbjct: 285 ESW------AAGDYKTVREYFLDAPAVERENMNLNWPVPDYEGLKKFL 326


>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
          Length = 388

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 28/204 (13%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           N  Y  +   + +Q  +  L    S S    +     + SK   I IS   +        
Sbjct: 4   NSDYIVVDTARSLQLVLINLSQADSISVDTESSGYYTYFSKVCLIQISAKGK-------- 55

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM 483
             I   L +                L  L   FE++  LKI H+   D   L + +G   
Sbjct: 56  NYIIDPLKLQN--------------LESLGNLFEDKKILKIFHSAIDDIKALKKDFGFQF 101

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           +   D    S +LD     + +  +   +    + ++ K  + S    +  +    ++A 
Sbjct: 102 QNIADTGFSSRLLD--HEQYSLTYLVDYY---HKIKLSKKEQKSNWEKRPLEKSQLQYAA 156

Query: 544 ENSNVILQLWLLLRPKLIVEKLLH 567
            ++  +  +W  ++ +LI   L  
Sbjct: 157 LDTVYLETIWEKMKEELIKRNLYE 180


>gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862]
          Length = 1440

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 62/390 (15%), Positives = 144/390 (36%), Gaps = 64/390 (16%)

Query: 244 RKLVMLR-TDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA------------- 289
           R+L+ ++ TD   +  L+    ++ +     +F   ++    I                 
Sbjct: 259 RQLLTMKVTDYTSSFILKKFSRDENDE----AFFADMKPGTWIRARGPIQQDDFVRDLTM 314

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK------INS 343
           T YD +     P  LD    E K I + T     T   T+       Q +K        +
Sbjct: 315 TAYDMEIIKHAPR-LDPYEGEQKRIELHTHSVMSTMDATNGIGDYVKQAAKWGMDAIAVT 373

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV-----QKLETIGSASFKIITDT 398
           +    + F E     ++  I      ++   +D +  +      KL+      F + T  
Sbjct: 374 DTAGAQGFPEAASSAAKNDIKMIYGVEVNLVEDGEPIIFNPDHTKLDEAEFVVFDVETTG 433

Query: 399 MDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
           + A + K I ++         I+   +  D  F +    +DL+   + D    +   K++
Sbjct: 434 LSAVYDKVIELSAVKMVKGNVIAEFSEFIDPGFPLSQTTVDLT-SITDDMVRGSKPEKQV 492

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM--RGFEDIMLMSYVLDSGRSSH 503
               ++F+ +   + +GHN+ +D   +     R+ ++       D ++++  L     S+
Sbjct: 493 FEEFREFYGDA--VLVGHNVTFDMGFMQEGYARHQLAPITNPVIDTLILARFLYPNMRSY 550

Query: 504 DIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQV-QEHAIENSNVILQLWLLLRPK 559
            + ++A+ +   L    + I  S +++  ++++   Q  +E+ IE ++           +
Sbjct: 551 RLNTLAKHFGIVLEQHHRAIFDS-ETTGHLNRVFLEQAREEYGIEYAD-----------Q 598

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           L    + +   R  +P   +V     TG++
Sbjct: 599 LNDHMMDNDAWRHGRPNHAIVLVQTQTGVK 628


>gi|150865308|ref|XP_001384465.2| hypothetical protein PICST_35911 [Scheffersomyces stipitis CBS
           6054]
 gi|149386564|gb|ABN66436.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 992

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 20/184 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+   + FGIP I     EA+   A    I   +G    II+ D D    +   T +Y  
Sbjct: 732 VQELLRRFGIPYITAP-MEAEAQCAELVKIGLVDG----IITDDSDCF--LFGGTKVYKN 784

Query: 158 VKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
           +  +K        + V+ K G+  + ++ L  L G   D   GI GIG   A  +L E+G
Sbjct: 785 MFNQKQYVECYSQDDVVDKIGLTRKNLIELALLLG--SDYTEGIKGIGPVLAMEILAEFG 842

Query: 213 NLENILINASR----IKQ-KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           +L+N           +K  KK +  + +       + KL +     P ++  +     + 
Sbjct: 843 SLKNFKKWFDEKTKTVKSDKKDQTALEKNLLGRIRNGKLFLPER-FPDSVVFDAYEHPEV 901

Query: 268 NGPR 271
           +  R
Sbjct: 902 DHDR 905


>gi|319781433|ref|YP_004140909.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167321|gb|ADV10859.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 206

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            +G+ +    T  ++    +   + IS  D                S    Q + G+   
Sbjct: 18  NVGAVAIDTETLGLNPHRDRLCVVQISPGDG---------------SADVIQIAPGQKKA 62

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L     N    K+ H  ++D  VL+  +G+         + S +  +    H 
Sbjct: 63  PN-----LVSLLRNRGVTKLFHYGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHG 117

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +  I  + L      + K+++SS    +    +  E+A  +   + +L  +L  +L  + 
Sbjct: 118 LKDICFELLGVG---LSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLARDG 174


>gi|317376169|sp|B3LQY3|FEN1_YEAS1 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|190409721|gb|EDV12986.1| structure-specific endonuclease RAD27 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 382

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 89/302 (29%), Gaps = 54/302 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + + G   M ++ L+         +   +FD      ++       + R + 
Sbjct: 55  TNEAGETTSHLMG---MFYRTLRMIDNGIKPCY---VFDGKPPDLKSHELTKRSSRRVET 108

Query: 88  PEMLLPQ--------------------LPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
            + L                           +      GIP I     EA+   A     
Sbjct: 109 EKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAP-TEAEAQCAELAKK 167

Query: 128 AEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMV 180
                  V    S D D +   +P    + T  E K      ID E V++   +  E+ V
Sbjct: 168 G-----KVYAAASEDMDTLCYRTPFLLRHLTFSETKKEPIHEIDTELVLRGLDLTIEQFV 222

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA--E 238
            L  + G   D    I G+G  TA  L++ +G++E I+      +    +  I E    +
Sbjct: 223 DLCIMLG--CDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYK 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATTY 292
            AR+     +      I     +L         LI +               I+R+    
Sbjct: 281 QARM-----LFLDPEVIDGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGL 335

Query: 293 DC 294
             
Sbjct: 336 KS 337


>gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c]
 gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 312

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 39/265 (14%)

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +Q  E+A  +   +  +   L          H Y   +  +  +   +   G+ ID DL+
Sbjct: 4   AQFVEYARRDVAAMRDVVKRL--------PSHNYAGAELALWFLDQTINDRGVLIDTDLV 55

Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           +     + +   +L +    L+G     ++ +   D L   L    G      Q  T A+
Sbjct: 56  QAAIGAVERAKQTLAQRTEALTGGAVQAATQR---DALLQHLNTAHGVALPDMQQHTVAR 112

Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
            ++     +  + + +   RQ S   +    +L +  +   +   T     ++ TGR A 
Sbjct: 113 CVDDPALPE-TVRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAG 171

Query: 716 LEPNLQNIPIKTDLGQKI---------------------------RRAFISPPTKKLISA 748
                 N+P  T   + I                           R   I+P  KKL+ A
Sbjct: 172 RLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVA 231

Query: 749 DYSQIELRILAHIAKITPLYQVFEN 773
           D S IE R+LA +A  TP    F  
Sbjct: 232 DLSIIEGRVLAWLAGETPKLHAFRE 256


>gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva]
          Length = 996

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 30/260 (11%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   +   Y  I N  D    + KL+ I   S  +     + +      + +ST ++   
Sbjct: 464 ESSPDKIRYKIIDNEADFNSMLDKLKNIRVLSLDVEHHDTETYRGFICLVQLSTPEE--- 520

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR- 478
                  I     +                ++ L +   +   LKI H    D + L R 
Sbjct: 521 -----NYIIDPFKIFGK-------------MNKLNRLTTDPKILKIMHGASNDVVWLQRD 562

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           + I +    D    + VL+    S  +A + QK+ +     + K  + S    +  D+++
Sbjct: 563 FNIFVVNLFDTREAAKVLNLAEQS--LAKLIQKYFNIK---LNKRFQLSDWSKRPLDAEM 617

Query: 539 QEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            ++A  +S+ ++ L+  L+ ++    +  + + + ++      + Q    G +I +   K
Sbjct: 618 LDYACCDSHYLIPLYSALKDEILSKEDGRVKIIQVMNNGRETCLKQYVDRGPEIYKKF-K 676

Query: 597 QVSAEISKNLLSLEENIYDL 616
            +S      +  L+   Y+L
Sbjct: 677 SISKRHKIRIPELDFVSYNL 696


>gi|261193829|ref|XP_002623320.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
 gi|239588925|gb|EEQ71568.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
 gi|239613756|gb|EEQ90743.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ER-3]
          Length = 406

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I     EA+   A         G      S D D +   SP    + T
Sbjct: 152 CKKLLKLMGVPYINAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 206

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP +G  TA  L++++
Sbjct: 207 FSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 264

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E     + +R+L           P  +   E  +   
Sbjct: 265 GSLEKVVEAIQSDPKKKYT--IPEDWPY-KDARELFFDPDVRKADHPDCNFKWEAPDVEG 321

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 322 LVKFLVE 328


>gi|156844457|ref|XP_001645291.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115951|gb|EDO17433.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 746

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 89/250 (35%), Gaps = 32/250 (12%)

Query: 326 IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
            ++ +  S      ++  ++      + ++ +  +    N   T +  ++ +Q  + KL+
Sbjct: 170 PESEELPSHYAHPYEVEIDKQEYNASVLQVAEPLKSQPWNSESTWVDTSEALQSMLDKLK 229

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
                +  +                       D  S+      + +S    +D       
Sbjct: 230 ECTEIAVDLE--------------------HHDYRSYYGIVCLMQISTRK-EDFLVDTLA 268

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
            ++ L  L + F + + LK+ H    D + L R  G+ +    D    S  L  G   H 
Sbjct: 269 LRDELHILNEVFADPNILKVLHGAFMDIIWLQRDLGLYVVSLFDTYHASRAL--GFPRHS 326

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN--VILQLWLLLRPKLIV 562
           +A + +K+ ++       S+K  +   ++       HA   ++   +L ++  +R +LI 
Sbjct: 327 LAYLLEKYANFKT-----SKKYQLADWRVRPLSKPMHAYARADTHFLLNIYDQIRNQLIR 381

Query: 563 E-KLLHVYER 571
           E KL  V   
Sbjct: 382 ENKLAEVLFE 391


>gi|32453731|ref|NP_861940.1| RnaseH [Enterobacteria phage RB69]
 gi|32350550|gb|AAP76149.1| RNaseH ribonuclease [Enterobacteria phage RB69]
          Length = 290

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 15/172 (8%)

Query: 39  AGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-- 96
               N + K +   RK+        + +  +  +R +    YK NR    E         
Sbjct: 45  HVVLNSIRKNVVMFRKQGYTKFVLCMDNATSGYWRRDFAYYYKKNRKTDREASKWDWEGY 104

Query: 97  ------LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS- 149
                 +V    +      ++I  +EADD I   T      G  V I+++D D  QL   
Sbjct: 105 FTALHQVVDEIKKYMPYVVMDIDKYEADDHIGVLTKYLSLAGHKVCIVASDGDFTQLHKY 164

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
           P    +   +++ + I++   +           + L GD  D +  +   G 
Sbjct: 165 PNVKQWSPPQKKWVKIKNGSAEIDCMT------KILKGDRKDGVASVRVRGD 210


>gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus]
          Length = 910

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 102/314 (32%), Gaps = 41/314 (13%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKG------- 313
           L  ++ + P+L    +          V   +   +A    P  L  +  E K        
Sbjct: 194 LHAKNISRPQLK--FREKIDNSNTPFVPKLFIKPNALKPLPEALTKSGRERKERPEDLDV 251

Query: 314 IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373
            A   +       + ++    +          +P    L++ +     PI       I  
Sbjct: 252 PAALADFIHQQRTQQTEQDMFAHPYQYELEHFSPPDGVLKKPEPQMYRPIKETPCHFITT 311

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
             ++ +  +KL      +  +                          SF   T  + +S 
Sbjct: 312 LDELVELNEKLMNCKEFALDLE--------------------HHSYRSFLGLTCLMQIST 351

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLM 492
            T +D        +  +S L + F +   +K+ H    D   L + +G+ +    D    
Sbjct: 352 RT-EDFIIDTLELRSDMSILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQA 410

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVIL 550
           + +L+ G+  H +  + + + S     +   ++  +   +I     ++ ++A ++++ +L
Sbjct: 411 ARLLNLGK--HSLDHLLKLYCS-----VDADKQYQLADWRIRPLPEEMIQYARDDTHYLL 463

Query: 551 QLWLLLRPKLIVEK 564
            ++  +R  L    
Sbjct: 464 YIYDKMREALWERG 477


>gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group]
          Length = 854

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 75/175 (42%), Gaps = 19/175 (10%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
            YL++ F++    K+ H    D + L R +GI +    D    S +L   R+S       
Sbjct: 276 DYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQMDRNS------- 328

Query: 510 QKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEK--- 564
            + L +    +  +++      ++     ++ ++A E+++ +L ++ L+R +L+ E    
Sbjct: 329 LEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKESSDE 388

Query: 565 ---LLHVYERL-DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
              LL VY+R  +  +     ++      +    LK+   E     LS+  NIY 
Sbjct: 389 NDLLLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKE--NEFDARQLSVLANIYK 441


>gi|303310683|ref|XP_003065353.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105015|gb|EER23208.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 766

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 103/309 (33%), Gaps = 24/309 (7%)

Query: 270 PRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
            +  + L    FT +I ++  + D     +               A         + KT 
Sbjct: 98  EKADACLDE--FTGIIKKLGPSQDERGQELNKRASKAQFPGAYNFASSKIPKPQLSFKTR 155

Query: 330 QFSSLSDQTSKI-------------NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376
             +  S     I              +EQT     +E+ +    + I +  Y     +  
Sbjct: 156 PNNHASSPFRPILRQKPHALIPLPPVAEQTSTNGDVEQSEHPYAHEIKDCHYPASTYSSS 215

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPI-AIAIST-LDQKDDTSFKVETIFIDLSVH 434
             Q  +  E+  +     I + +     +   A  I+  L+  D  S+      + +S  
Sbjct: 216 TPQLYKPFESTTATFVNTI-EGVKVMLEELKSAKEIAVDLEHHDAHSYHGLVCLMQISTR 274

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMS 493
                       +E L  L + F +   LK+ H    D + L R  G+ + G  D    S
Sbjct: 275 EKDWIVDTLLPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLFDTYHAS 334

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L+       +  +  K+++    E  K  +++    +     + ++A  +++ +L ++
Sbjct: 335 VALN--YPKKSLKFLLDKFVNL---EAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYIY 389

Query: 554 LLLRPKLIV 562
             LR +LI 
Sbjct: 390 DNLRNELIE 398


>gi|119192254|ref|XP_001246733.1| conserved hypothetical protein [Coccidioides immitis RS]
          Length = 368

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------ID 164
           E    EA+   A         G      S D D +   SP    + T  E++      I 
Sbjct: 126 EYAPTEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIH 181

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
           +E V++  G+  ++ V L  L G   D +  IP +G  TA  +++++G+LE ++      
Sbjct: 182 LERVLEGLGMDRKQFVDLCILLG--CDYVDPIPKVGPNTALKMIRDHGSLEKVVEAMEND 239

Query: 225 KQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
            +KK    I E    E A   R L       P   P      E  +   L+ FL  
Sbjct: 240 PKKKYT--IPEDWPYEQA---RDLFFEPDVRPADHPECDFKWESPDVEGLVKFLVE 290


>gi|320034794|gb|EFW16737.1| exosome complex exonuclease Rrp6 [Coccidioides posadasii str.
           Silveira]
          Length = 772

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 103/309 (33%), Gaps = 24/309 (7%)

Query: 270 PRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
            +  + L    FT +I ++  + D     +               A         + KT 
Sbjct: 98  EKADACLDE--FTGIIKKLGPSQDERGQELNKRASKAQFPGAYNFASSKIPKPQLSFKTR 155

Query: 330 QFSSLSDQTSKI-------------NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376
             +  S     I              +EQT     +E+ +    + I +  Y     +  
Sbjct: 156 PNNHASSPFRPILRQKPHALIPLPPVAEQTSTNGDVEQSEHPYAHEIKDCHYPASTYSSS 215

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPI-AIAIST-LDQKDDTSFKVETIFIDLSVH 434
             Q  +  E+  +     I + +     +   A  I+  L+  D  S+      + +S  
Sbjct: 216 TPQLYKPFESTTATFVNTI-EGVKVMLEELKSAKEIAVDLEHHDAHSYHGLVCLMQISTR 274

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMS 493
                       +E L  L + F +   LK+ H    D + L R  G+ + G  D    S
Sbjct: 275 EKDWIVDTLLPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLFDTYHAS 334

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L+       +  +  K+++    E  K  +++    +     + ++A  +++ +L ++
Sbjct: 335 VALN--YPKKSLKFLLDKFVNL---EAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYIY 389

Query: 554 LLLRPKLIV 562
             LR +LI 
Sbjct: 390 DNLRNELIE 398


>gi|147920854|ref|YP_685339.1| flap endonuclease-1 [uncultured methanogenic archaeon RC-I]
 gi|121690538|sp|Q0W6I0|FEN_UNCMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|110620735|emb|CAJ36013.1| flap structure-specific endonuclease [uncultured methanogenic
           archaeon RC-I]
          Length = 340

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 87/268 (32%), Gaps = 64/268 (23%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKE 55
            N    VD  + +Y+       + R+ DG P         + ++G    +  L++   K 
Sbjct: 20  NNRTVAVDAYNTLYQ----FLSIIRQQDGAPLADDRGNVTSHLSGIIYRVTNLVEEGMKP 75

Query: 56  SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEML----------------------LP 93
                   +FD    +F+ E        R    +M                         
Sbjct: 76  ------VFVFDGKPPSFKAETIKARAEVREAARQMYEAAKAAGSAEAYKYAQASTSINRQ 129

Query: 94  QLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
            +   ++     GIP I              +  A        + S D D +   +P   
Sbjct: 130 IVDDAKVLLGYMGIPFIVAPSEGEAQAAYMVSRGAAD-----YVGSQDYDSLLFGAPRVV 184

Query: 154 L---------------YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
                           Y  VK E I+++ V+   G+  E+++ +  L G   D  PGI  
Sbjct: 185 RNIAITGKRKVPRKNIYMDVKPEVIELQEVLATLGLTREELIDMAILVG--TDYNPGIFK 242

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQ 226
           +G KTA  L++++G  +N+      + Q
Sbjct: 243 VGPKTALKLVKKHG--DNMPAILDELGQ 268


>gi|15920393|ref|NP_376062.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
 gi|15621175|dbj|BAB65171.1| 304aa long hypothetical flap endonuclease [Sulfolobus tokodaii str.
           7]
          Length = 304

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 24/189 (12%)

Query: 99  RLATQAFGIPAIEIQG---FEADDI-IATYTYIAEKEGFAVTIISTDK--DLMQLVS--- 149
           +   +A GIP ++       EA  I I   ++    + +   +    +    + L     
Sbjct: 91  KELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTLSGKRK 150

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+++ ++KK G+  E+++ +  + G   D  P GI G G KTA  +
Sbjct: 151 LPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVG--TDYNPDGIKGYGVKTAYRI 208

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           +++YG+LE  +     I + K   N+ E   +  L  ++V  +         E+L L DC
Sbjct: 209 IKKYGSLEKAIEK-GEIPKIKVNFNVEEIR-SLFLKPQVVEPK---------ENLELVDC 257

Query: 268 NGPRLISFL 276
           +  +++  L
Sbjct: 258 DSNKILDIL 266


>gi|294893362|ref|XP_002774434.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
 gi|239879827|gb|EER06250.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
          Length = 407

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 86/288 (29%), Gaps = 58/288 (20%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + I+G   M+ + L+         +   +FD    + +       +  + K 
Sbjct: 58  TNAAGEVTSHISG---MVTRTLRMMEAGIKPVY---VFDGKPPSLKTGELAKRREVKKKA 111

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            E L   +                         V+      G   IE    EA+   A  
Sbjct: 112 EEDLKEAIEKGDDEGIRKAAHRSTRVTLQMNADVKKLLTMMGCCIIEAPE-EAEATCAAL 170

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCL---------------YDTVKEEKIDIEHVI 169
               +  G     ++ D D++   SP                     T    ++ +  V+
Sbjct: 171 VRYGKCYGA----VTDDMDVLTFGSPVQIKNLFNTLGSGQQGSAGKTTKPVYEMSLSTVL 226

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           ++  +  ++ +    + G   D +  I GIG   A  L+ E+ ++E +L +  + K    
Sbjct: 227 EQLDVSMDQFIDFCIMCG--CDYLETIRGIGPNNAFKLIVEHKSIEGVLDHIDKTKFAVP 284

Query: 230 RENILEYAETARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFL 276
                     A   + +     D P +     +L     +   L  FL
Sbjct: 285 ESW------AAGDYKTVREYFLDAPAVERENMNLNWPVPDYEGLKKFL 326


>gi|6322736|ref|NP_012809.1| Rad27p [Saccharomyces cerevisiae S288c]
 gi|140964|sp|P26793|FEN1_YEAST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1; AltName: Full=RAD2
           homolog nuclease 1; Short=RTH1 nuclease; AltName:
           Full=Structure-specific endonuclease RAD27
 gi|317376170|sp|C7GVJ8|FEN1_YEAS2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|317376171|sp|A6ZZK4|FEN1_YEAS7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|317376172|sp|C8ZC62|FEN1_YEAS8 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|248392|gb|AAB21998.1| RAD2 homolog [Saccharomyces cerevisiae]
 gi|486190|emb|CAA81953.1| RAD27 [Saccharomyces cerevisiae]
 gi|151941690|gb|EDN60052.1| 5'-3'-exonuclease [Saccharomyces cerevisiae YJM789]
 gi|256269907|gb|EEU05165.1| Rad27p [Saccharomyces cerevisiae JAY291]
 gi|259147728|emb|CAY80978.1| Rad27p [Saccharomyces cerevisiae EC1118]
 gi|285813148|tpg|DAA09045.1| TPA: Rad27p [Saccharomyces cerevisiae S288c]
 gi|323347750|gb|EGA82014.1| Rad27p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 382

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 89/302 (29%), Gaps = 54/302 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + + G   M ++ L+         +   +FD      ++       + R + 
Sbjct: 55  TNEAGETTSHLMG---MFYRTLRMIDNGIKPCY---VFDGKPPDLKSHELTKRSSRRVET 108

Query: 88  PEMLLPQ--------------------LPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
            + L                           +      GIP I     EA+   A     
Sbjct: 109 EKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAP-TEAEAQCAELAKK 167

Query: 128 AEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180
                  V    S D D +   +P    + T  E       +ID E V++   +  E+ V
Sbjct: 168 G-----KVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFV 222

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA--E 238
            L  + G   D    I G+G  TA  L++ +G++E I+      +    +  I E    +
Sbjct: 223 DLCIMLG--CDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYK 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATTY 292
            AR+     +      I     +L         LI +               I+R+    
Sbjct: 281 QARM-----LFLDPEVIDGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGL 335

Query: 293 DC 294
             
Sbjct: 336 KS 337


>gi|172035932|ref|YP_001802433.1| ribonuclease D [Cyanothece sp. ATCC 51142]
 gi|171697386|gb|ACB50367.1| ribonuclease D [Cyanothece sp. ATCC 51142]
          Length = 214

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 76/206 (36%), Gaps = 25/206 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +     + + +     + +    T  +     +   + +       D S  V  I I+
Sbjct: 13  VCDRDLSPETLDRYLQAKAIAIDTETMGLIPQRDRLCLVQLC------DPSGYVTAIRIE 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDI 489
               T+++              LK+  EN++ +KI H  ++D     + + I        
Sbjct: 67  KGQQTAEN--------------LKQLLENQNIIKIFHYARFDVAQFKYNFAIETEPIFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +   SH + ++ Q+       E+ KS +SS   +  + S+ Q  +A  +   
Sbjct: 113 KVASKLARTYTGSHGLKALVQEIEGV---ELDKSSQSSDWGNSQNLSEAQLSYAANDVRY 169

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDK 574
           ++ L   L   L  E+   + ++  K
Sbjct: 170 LIPLKEQLITMLQREERWELAQKCMK 195


>gi|323454359|gb|EGB10229.1| hypothetical protein AURANDRAFT_53007 [Aureococcus anophagefferens]
          Length = 538

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 113/384 (29%), Gaps = 62/384 (16%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY-----PAVT--FRNEIY--P 78
               G   + + GF N   ++L+   K         +FD         T   R+E     
Sbjct: 56  TNSRGEATSHLQGFANRTLRMLEAGAKP------VFVFDGAAPELKGKTLKGRSEAKRAA 109

Query: 79  DYKANRPKIPEML-----------------LPQLPLVRLATQAFGIPAIEIQGFEADDII 121
           + K  R +  +                         V+   +  G+P +E  G      +
Sbjct: 110 EEKLARARDADSGATTEEVYKAASASTRVTRQHNDDVKRLLRLMGVPVVEAPGEAEASCV 169

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS----------PTTCLYDTVKEEKIDIEHVIKK 171
           A   + A        +++ D D +   +                +     +ID+   +++
Sbjct: 170 ALVRHGACD-----FVVTEDMDALTFGAAKMVKNLFDVEGARAKEKRPAYEIDLAAALRE 224

Query: 172 WG----IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
            G          V    L G   D +  +PG+G  TAA LL+ + +LE       R+ +K
Sbjct: 225 LGPRGLGTMAAFVDFCILCG--CDYLDHVPGVGPATAAKLLKSHASLE---RAVVRVGRK 279

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL---KALEFTKL 284
                +  +    R +R L    T V     ++       +   L +FL         ++
Sbjct: 280 VGGRPVAPHGWDFRAARALFFAPTVVAAGETVDA---PPPDYAALRAFLVDGHEFNGDRV 336

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
              VA    C  A  +  + D  +         +   +      ++         +    
Sbjct: 337 DKMVARLRKCREAKPQKRIDDFFSKSPAKGPARSPPAKREPEPAAKPEPDGAAKREPEPA 396

Query: 345 QTPQKLFLERLQKLSQYPINNDSY 368
              +     + +      I  D+Y
Sbjct: 397 AKREPDGAAKREPDGGDDIGLDAY 420


>gi|87300944|ref|ZP_01083786.1| putative ribonuclease D [Synechococcus sp. WH 5701]
 gi|87284815|gb|EAQ76767.1| putative ribonuclease D [Synechococcus sp. WH 5701]
          Length = 228

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 75/218 (34%), Gaps = 28/218 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +       +W+  L    + +       +     +   + I+                  
Sbjct: 22  VFEGDLDAEWLSLLAQAPALAVDTEAMGLVHGRDRLCLVQIA------------------ 63

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
              H       +    ++    L++  E+    K+ H  ++D   L    GI++      
Sbjct: 64  --DHLDNVCCIRIARGQQEAPRLRELMESPAIEKVFHFARFDLAALGEGLGIAVAPLFCT 121

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSN 547
            + S +  +  S H +  + Q+ +     E+ K  +SS    ++++ ++Q+  +A  +  
Sbjct: 122 KVASRLARTYSSRHGLKEVVQELVGV---ELDKQSQSSDWGRVEELGEAQLV-YAANDVR 177

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            +L     L   L  E+ L +  R     + V ++++ 
Sbjct: 178 YLLAARHALAAILEREERLDLARRC-FACLPVFAELDR 214


>gi|257053576|ref|YP_003131409.1| flap endonuclease-1 [Halorhabdus utahensis DSM 12940]
 gi|256692339|gb|ACV12676.1| XPG I domain protein [Halorhabdus utahensis DSM 12940]
          Length = 326

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 103/319 (32%), Gaps = 71/319 (22%)

Query: 4   ENHLFLVDGSSFIYRAFY-------ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56
           E  +  VD  +++YR  Y           +    DG  V  + G    L K       + 
Sbjct: 21  EGSVVAVDAHNWLYR--YLTTTVKWTNDDIYTTADGTEVANLVGVVQGLPKF---FEADV 75

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
                  +FD  AVT   ++  D    R +  E    QL   R A  A  +  +E +   
Sbjct: 76  TP---VFVFD-GAVT---DLKDDEVQRRREQREQYEDQLEDAREAGDAVRVARLESRTQR 128

Query: 117 ADDII-----------------------ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
             D+I                       A   ++A +      + + D D +   +P T 
Sbjct: 129 LTDVILETTRELLALLDVPTVDAPAEGEAQAAHMARRGDVD-YVGTEDYDALLFGAPFTL 187

Query: 154 LYDTVKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
              T     E +D E  + +  +  E++V +  L G   D   G+ G G KTA   ++E+
Sbjct: 188 RQLTSSGDPELMDFEATLAEHDLSWEQLVDVALLCG--TDFNDGVRGYGPKTAVKAVREH 245

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKL-----VMLRTDVPITIPLEHLILED 266
           G+L  +  N               Y E A   R+L     V     +  +I  +     +
Sbjct: 246 GDLWGVSENED------------VYVENADRIRELFLDPAVTEEYTIETSIDPDLAAARE 293

Query: 267 C-------NGPRLISFLKA 278
                   +   +    + 
Sbjct: 294 FVTDQWAVDAEEVARGFER 312


>gi|323332740|gb|EGA74145.1| Rad27p [Saccharomyces cerevisiae AWRI796]
          Length = 370

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 89/302 (29%), Gaps = 54/302 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + + G   M ++ L+         +   +FD      ++       + R + 
Sbjct: 43  TNEAGETTSHLMG---MFYRTLRMIDNGIKPCY---VFDGKPPDLKSHELTKRSSRRVET 96

Query: 88  PEMLLPQ--------------------LPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
            + L                           +      GIP I     EA+   A     
Sbjct: 97  EKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAP-TEAEAQCAELAKK 155

Query: 128 AEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180
                  V    S D D +   +P    + T  E       +ID E V++   +  E+ V
Sbjct: 156 G-----KVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFV 210

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA--E 238
            L  + G   D    I G+G  TA  L++ +G++E I+      +    +  I E    +
Sbjct: 211 DLCIMLG--CDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYK 268

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATTY 292
            AR+     +      I     +L         LI +               I+R+    
Sbjct: 269 QARM-----LFLDPEVIDGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGL 323

Query: 293 DC 294
             
Sbjct: 324 KS 325


>gi|256822615|ref|YP_003146578.1| ribonuclease D [Kangiella koreensis DSM 16069]
 gi|256796154|gb|ACV26810.1| ribonuclease D [Kangiella koreensis DSM 16069]
          Length = 384

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 29/210 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +   ++     + + + +Q+  Q    +   +     D  + +  +   I I        
Sbjct: 7   EQHQDSVHVETVSDPERLQELCQSWLALKELAVDTEFDRTNTYFHRLALIQI-------- 58

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HR 478
                         +  ++    + L  + LS L + F +   +K  H+   D   L H+
Sbjct: 59  --------------YDGKEIYLIDPLAFDDLSALTELFASTSVVKALHSCSEDLEALYHQ 104

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-KEILKSRKSSIPIDKISDSQ 537
           YG       D  + +  LD    S    +I + +LS    KE  K+     P+ +    +
Sbjct: 105 YGFEFNQVFDTQIAA-SLDGIGLSVGYGNIVEHFLSVVLDKEHTKTDWLQRPLSQ----E 159

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            + +A ++   ++ ++  LR  L+ + L  
Sbjct: 160 QRVYAAQDVQYLMPVYYRLRDSLLEKGLFE 189


>gi|118596582|dbj|BAF37950.1| putative flap endonuclease-1 [Sulfolobus sp. Tu A]
 gi|118596584|dbj|BAF37951.1| putative flap endonuclease-1 [Sulfolobus sp. Tu B-1]
 gi|118596586|dbj|BAF37952.1| putative flap endonuclease-1 [Sulfolobus sp. Sko-3]
 gi|118596588|dbj|BAF37953.1| putative flap endonuclease-1 [Sulfolobus sp. Ta]
          Length = 304

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 24/189 (12%)

Query: 99  RLATQAFGIPAIEIQG---FEADDI-IATYTYIAEKEGFAVTIISTDK--DLMQLVS--- 149
           +   +A GIP ++       EA  I I   ++    + +   +    +    + L     
Sbjct: 91  KELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTLTGKRK 150

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+++ ++KK G+  E+++ +  + G   D  P GI G G KTA  +
Sbjct: 151 LPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVG--TDYNPDGIKGYGVKTAYRI 208

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           +++YG+LE  +     I + K   N+ E   +  L  ++V  +         E+L L DC
Sbjct: 209 IKKYGSLEKAIEK-GEIPKIKVNFNVEEIR-SLFLKPQVVEPK---------ENLELVDC 257

Query: 268 NGPRLISFL 276
           +  +++  L
Sbjct: 258 DSNKILDIL 266


>gi|146278808|ref|YP_001168967.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
 gi|145557049|gb|ABP71662.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
          Length = 204

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 72/213 (33%), Gaps = 25/213 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L+     +    T  +D    +   + +S  D                  H 
Sbjct: 6   HRNDLPDGLDLGRVVAIDTETMGLDPRRDRLCVVQLSAGDGD---------------AHL 50

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
            Q   G+          L++   +   LK+ H  ++D   L R +G+         + S 
Sbjct: 51  VQIERGQTRAPN-----LERLLTDPQVLKLFHFGRFDIAALQRAFGVRTEPVWCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  +  + +     ++ K +++S           +++A  +   + +L  
Sbjct: 106 MVRTFTDRHGLKYLLLELVGV---DVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKE 162

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
            L  +L+ E  + + +R     +   +++++ G
Sbjct: 163 ELEARLLREGRMELAQRC-FDFLPTRAELDLMG 194


>gi|156553807|ref|XP_001603401.1| PREDICTED: similar to flap endonuclease-1 [Nasonia vitripennis]
          Length = 381

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 85/281 (30%), Gaps = 56/281 (19%)

Query: 28  RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPK 86
              DG   + + G F   +  +    +          +FD    T +          R +
Sbjct: 54  TSVDGETTSHLMGTFYRTIRLVENGIKPVY-------VFDGKPPTLKGGELAKRAERREE 106

Query: 87  IPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIAT 123
             + L                              +      GIP I+    EA+   A 
Sbjct: 107 AQKQLQAAEEAGNVEDVDKFNRRLVKVTKQHGEEAKQLLTLMGIPFIDAPC-EAEAQCAA 165

Query: 124 YTYIAEKEGFAVTI-ISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPP 176
                      V    + D D +           T  E      ++I  + V+   G+  
Sbjct: 166 MVK-----SGKVYATATEDMDALTFGCNVLLRRLTFSEARKMPIQEIQYDKVLNGLGLTR 220

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ + L  + G   D    I G+G K A  L++ + +LE IL N    K     +    Y
Sbjct: 221 DEFIDLCIMLG--CDYTTSIKGVGPKRAIELIKNHKSLEKILENLDTKKFPVPEDW--NY 276

Query: 237 AETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLISFL 276
            +    +R+L     +  +  P E  L   D +   L+ FL
Sbjct: 277 KD----ARQL---FIEPEVKDPEEVDLKWNDPDEEGLVKFL 310


>gi|157169412|ref|XP_001651504.1| flap endonuclease-1 [Aedes aegypti]
 gi|122094730|sp|Q178M1|FEN1_AEDAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|108878396|gb|EAT42621.1| flap endonuclease-1 [Aedes aegypti]
          Length = 380

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 95/303 (31%), Gaps = 61/303 (20%)

Query: 10  VDGSSFIYR---AFYATPLLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIF 65
           +D S  +Y+   A  A        DG   + + G F   +  L    +          +F
Sbjct: 33  IDASMCLYQFLIAVRAEGAQLTSVDGETTSHLMGTFYRTIRLLENGIKPVY-------VF 85

Query: 66  DYPAV-------TFRNEIYPDY-KANRPKIPEMLLPQLPLV---------------RLAT 102
           D           T R E   +  KA        +   +                  +   
Sbjct: 86  DGKPPDLKSGELTKRAEKREEAQKALDKATEAGVTEDIDKFNRRLVKVTKQHSNEAKELL 145

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTI-ISTDKDLMQLVSPTTCLYDTVKE- 160
           +  G+P ++    EA+   A         G  V    + D D +   S     + T  E 
Sbjct: 146 KLMGVPYVDAPC-EAEAQCAALVK-----GGKVYATATEDMDALTFGSNILLRHLTFSEA 199

Query: 161 -----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
                ++ + + +++   +  ++ + L  L G   D    I GIG K A  L+ ++  +E
Sbjct: 200 RKMPVQEFNYDKILQGLELTRDEFIDLCILLG--CDYCDSIRGIGPKKAVELINKHRTIE 257

Query: 216 NILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLI 273
            IL N    K+    EN          + +   +    P     E   L   + +   L+
Sbjct: 258 KILENLDT-KKYVVPENW---------NYQQARVLFKEPEVANPEEVELKWGEPDEEGLV 307

Query: 274 SFL 276
            +L
Sbjct: 308 KYL 310


>gi|119195137|ref|XP_001248172.1| hypothetical protein CIMG_01943 [Coccidioides immitis RS]
          Length = 766

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 103/309 (33%), Gaps = 24/309 (7%)

Query: 270 PRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
            +  + L    FT +I ++  + D     +               A         + KT 
Sbjct: 98  EKADACLDE--FTGIIKKLGPSQDERGQELNKRASRAQFPGAHNFASSKIPKPQLSFKTR 155

Query: 330 QFSSLSDQTSKI-------------NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376
             +  S     I              +EQT     +E+ +    + I +  Y     +  
Sbjct: 156 PNNHASSPFRPILRQKPHALIPLPPVAEQTSTNGDVEQSEHPYAHEIRDCHYPASTYSSS 215

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPI-AIAIST-LDQKDDTSFKVETIFIDLSVH 434
             Q  +  E+  +     I + +     +   A  I+  L+  D  S+      + +S  
Sbjct: 216 TPQLYKPFESTTATFVNTI-EGVKVMLEELKSAKEIAVDLEHHDAHSYHGLVCLMQISTR 274

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMS 493
                       +E L  L + F +   LK+ H    D + L R  G+ + G  D    S
Sbjct: 275 EKDWIVDTLLPWREELQILNEVFADPRILKVLHGSSMDVIWLQRDLGLYLVGLFDTYHAS 334

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L+       +  +  K+++    E  K  +++    +     + ++A  +++ +L ++
Sbjct: 335 VALN--YPKKSLKFLLDKFVNL---EAEKQYQTADWRLRPLLPGMFDYARSDTHYLLYIY 389

Query: 554 LLLRPKLIV 562
             LR +LI 
Sbjct: 390 DNLRNELIE 398


>gi|167527362|ref|XP_001748013.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773431|gb|EDQ87070.1| predicted protein [Monosiga brevicollis MX1]
          Length = 837

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 92/247 (37%), Gaps = 34/247 (13%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
           +++N  + PQ   L+  ++     +   + T +   + +   +++L+++   +  +   +
Sbjct: 238 TELNEFEVPQH-QLQPHEERLYGDLEQTTCTWVGTREALVGLIERLKSVSELAIDLEAHS 296

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
              +      + +ST                      S+D        ++ L  L   F 
Sbjct: 297 YRTYQGFTCLMQLST---------------------RSEDYLIDTLALRDDLKLLNVIFA 335

Query: 459 NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           +   LK+ H    D L L R + + +    D    + VL+     H +A + Q + ++  
Sbjct: 336 DPAILKVLHGADSDILWLQRDHSLYIVNMFDTGQATRVLN--FPRHSLAWLLQHYCNFKA 393

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYER 571
               K  + +    +    ++  +A  +++ +L ++  L  +L+ +       L  VY+R
Sbjct: 394 D---KKYQLADWRVRPLSEEMLHYARCDTHFLLYIYDRLHSELLAQGNEQANLLRAVYQR 450

Query: 572 LDKPMID 578
             +  + 
Sbjct: 451 SKELCLQ 457


>gi|302824807|ref|XP_002994043.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii]
 gi|300138097|gb|EFJ04877.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii]
          Length = 328

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 32/203 (15%)

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
           A+AI    +  D +       + L+   +            ++   K   E+ H  K+ H
Sbjct: 40  ALAIGLDCEGVDLARHGRLCIMQLAFQDAIYLVDAVQGGDALMQACKAALESPHVTKVVH 99

Query: 468 NIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           + K D   L+ ++GI +    D  +   +++                       L+  + 
Sbjct: 100 DCKRDSEALYFQHGIKLNNVFDTQIAHSLIE-----------------------LQQGRQ 136

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            IP D IS   +   A     V       +R  L  +         +      ++ M   
Sbjct: 137 WIPDDCISFVDLLADAKYCVGVAYDEKDEVRSLLRKD--------PEFWTHRPLTNMMKR 188

Query: 587 GIQIDQDLLKQVSAEISKNLLSL 609
               D   L ++   + + L + 
Sbjct: 189 AAADDVRFLLRIHRNMVQRLDAF 211


>gi|163733026|ref|ZP_02140470.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
 gi|161393561|gb|EDQ17886.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
          Length = 204

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 26/189 (13%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 L+     +    T  +     +   + +S  D K                H  Q
Sbjct: 8   NDLPDGLDLGPMVAIDCETMGLHPHRDRLCVVQLSGGDGK---------------AHLIQ 52

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
            + G+          L K  E+ + LK+ H  ++D   +   +G +        + S ++
Sbjct: 53  IAKGQTEAPN-----LCKLLEDPNVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLL 555
            +    H +A + Q+ L+    +I K ++SS    D ++D+Q+ ++A  +   + QL   
Sbjct: 108 RTYTDRHGLAKLLQELLNI---DISKQQQSSDWGADTLTDAQI-DYAASDVLYLHQLREA 163

Query: 556 LRPKLIVEK 564
           L   L  E 
Sbjct: 164 LNTMLTREG 172


>gi|320590957|gb|EFX03398.1| DNA-repair protein rad2 [Grosmannia clavigera kw1407]
          Length = 856

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 24/189 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   +P    + T
Sbjct: 603 CQRLLKLMGIPFIVAP-TEAEAQCAELAR----AGKVYAAASEDMDTLCFNTPILLRHLT 657

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ ++    +  E+ V L  L G   D +  IP +G  TA  L++E+
Sbjct: 658 FSEQRKEPIQEIHLDKLLLGLNMEREQFVDLCILLG--CDYLDPIPKVGPNTALKLIREH 715

Query: 212 GNLENILINASRIKQKKRRENILEY---AETARLSRKLVMLRTDVPITIPLE-HLILEDC 267
           G+LE +      +K  K+++ ++      E A   R+L   + DV      E     E  
Sbjct: 716 GSLEKV---VEFMKTDKKQKFVIPDDWPYEDA---REL-FFKPDVRSASDPECDFKWEKP 768

Query: 268 NGPRLISFL 276
           + P L+ FL
Sbjct: 769 DVPGLVQFL 777


>gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
 gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
          Length = 209

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 26/178 (14%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + +    T  ++    +   + +S  D   D                      +   +  
Sbjct: 24  AIAIDTETLGLNPHRDRLCVVQVSRGDGSADV--------------------VQIRPSDP 63

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LK    +   +KI H  ++D  VL   +G+         + S +  +    H +  
Sbjct: 64  APERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEK 564
           + ++ +       L  ++ S      + SQ Q ++A  +   +      L   L  E 
Sbjct: 124 VVRELVGVD----LSKQQQSSDWGAATLSQAQIDYAASDVLHLHAARERLDAMLAREG 177


>gi|218670593|ref|ZP_03520264.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 208

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 24/196 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   +            G+ +    T  +     +   + +S  D   D          
Sbjct: 4   TIRYHEGDISTADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADV--------- 54

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFED 488
                  + + G+          L    E+    KI H  ++D  VL H +G++      
Sbjct: 55  ------IRIAAGQKEAPN-----LVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFC 103

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + S ++ +    H +    ++ L     +I K+++SS    +       E+A  +   
Sbjct: 104 TKIASRLIRTYTDRHGLKDNLKEMLDI---DISKTQQSSDWAAETLSPAQLEYAASDVLY 160

Query: 549 ILQLWLLLRPKLIVEK 564
           +  L   L  +LI + 
Sbjct: 161 LHALRDKLTARLIRDG 176


>gi|255945091|ref|XP_002563313.1| Pc20g07900 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|317374920|sp|B6HEM2|FEN1_PENCW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|211588048|emb|CAP86119.1| Pc20g07900 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 395

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 20/187 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   SP    + T
Sbjct: 141 CKKLLELMGIPFINAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFESPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++  ++   +   + + L  L G   D +  IP +G  TA  L++E+
Sbjct: 196 FSEQRKEPIQEIHLDRALEGLDMDRAQFIDLCILLG--CDYLEPIPKVGATTALSLIKEH 253

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
            +LE +L       +KK    + E    E A   R+L       P   P      E  N 
Sbjct: 254 KSLEKVLEFMKNDPKKKF--VVPEDWPYEDA---RELFTNPDVRPADHPECDFKWEAPNV 308

Query: 270 PRLISFL 276
             LI FL
Sbjct: 309 EGLIEFL 315


>gi|209551599|ref|YP_002283516.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537355|gb|ACI57290.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 208

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G+ +    T  +     +   + +S  D   D                 + ++G
Sbjct: 16  DAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADV---------------IRIASG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +          L    E+    KI H  ++D  VL H +G++        + S ++ +  
Sbjct: 61  QKEAPN-----LVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTNPVFCTKIASRLIRTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     +I K+++SS    +       E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKEMLDV---DISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTERL 172

Query: 561 IVEK 564
           + + 
Sbjct: 173 LRDG 176


>gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
 gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
          Length = 209

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 26/178 (14%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + +    T  ++    +   + +S  D   D                             
Sbjct: 24  AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDPAP------------------ 65

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LK    +   +KI H  ++D  VL   +G+         + S +  +    H +  
Sbjct: 66  --ERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEK 564
           + ++ +       L  ++ S      + SQ Q ++A  +   +      L   L  E 
Sbjct: 124 VVRELVGVD----LSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREG 177


>gi|327350064|gb|EGE78921.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 402

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I     EA+   A         G      S D D +   SP    + T
Sbjct: 148 CKKLLKLMGVPYINAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 202

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP +G  TA  L++++
Sbjct: 203 FSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 260

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E     + +R+L           P  +   E  +   
Sbjct: 261 GSLEKVVEAIQSDPKKKYT--IPEDWPY-KDARELFFDPDVRKADHPDCNFKWEAPDVEG 317

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 318 LVKFLVE 324


>gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
 gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
          Length = 209

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 26/178 (14%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + +    T  ++    +   + +S  D   D                             
Sbjct: 24  AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDPAP------------------ 65

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LK    +   +KI H  ++D  VL   +G+         + S +  +    H +  
Sbjct: 66  --ERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEK 564
           + ++ +       L  ++ S      + SQ Q ++A  +   +      L   L  E 
Sbjct: 124 VVRELVGVD----LSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREG 177


>gi|38640254|ref|NP_944210.1| RNaseH ribonuclease [Aeromonas phage Aeh1]
 gi|33414939|gb|AAQ17982.1| RNaseH ribonuclease [Aeromonas phage Aeh1]
          Length = 306

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 19/199 (9%)

Query: 42  CNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLV--- 98
            + L   + N ++E      AV        +R + Y  YK +R K  +        +   
Sbjct: 48  LSSLKYNVLNRKQEYPNIIIAVDNSADGGYWRRQKYYFYKKHREKDRQASDWDWESIFDS 107

Query: 99  -----RLATQAFGIPAIEIQGFEADDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSP- 150
                    +      + +   EADDII       +++     V I+S+D D+ Q     
Sbjct: 108 IKTVAYELRENLPYKTLILPHTEADDIIGVLCKHFDEKFPDAPVLIVSSDGDMTQTQRYK 167

Query: 151 TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
               +   +++ +  +           K +  + + GD  D I  I          L  E
Sbjct: 168 NVKQWSPGQKKWVKPKEG------TWRKDLITKIIKGDGGDGIANIKSRSDYILTKLDGE 221

Query: 211 YG-NLEN-ILINASRIKQK 227
              ++ + +L  A   K  
Sbjct: 222 RQKSISSKLLAQAFEEKDP 240


>gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10, partial [Taeniopygia guttata]
          Length = 504

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 99/314 (31%), Gaps = 41/314 (13%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKG------- 313
           L  ++ + P+L    +          V   +   +A    P  L  +  + K        
Sbjct: 180 LHAKNISRPQLK--FREKIDNSNTPFVPKLFIKPNALKPLPEALTKSGRQRKERPEDLDV 237

Query: 314 IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373
            A   +       + ++    +          +P    L++ +     PI       I  
Sbjct: 238 PAALADFIHQQRTQKTEQDMFAHPYQYELEHFSPPDEVLKKPELQMYRPIEETPCHFITT 297

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
             ++ +  +KL T    +  +                          SF   T  + +S 
Sbjct: 298 LDELVELNEKLMTCKEFALDLE--------------------HHSYRSFLGLTCLMQIST 337

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLM 492
            T +D        +  ++ L + F +   +K+ H    D   L R +G+ +    D    
Sbjct: 338 RT-EDFIIDTLALRSDMNILNETFTDPAIVKVLHGADSDVEWLQRDFGLYLVNVFDTHQA 396

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVIL 550
           + +L+     H +  + + +       +   +K  +   +I     ++  +A ++++ +L
Sbjct: 397 ARLLN--LGRHSLDHLLKLYCG-----VDADKKYQLADWRIRPLPEEMIRYARDDTHYLL 449

Query: 551 QLWLLLRPKLIVEK 564
            ++  +R  L    
Sbjct: 450 YIYDKVRELLWERG 463


>gi|85709987|ref|ZP_01041052.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1]
 gi|85688697|gb|EAQ28701.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1]
          Length = 215

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 68/206 (33%), Gaps = 26/206 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           LE  G  +    T  +     +        +   D +  +    F   S + + +     
Sbjct: 19  LEGTGPLAVDTETMGLITHRDRL-----CVVQISDGSGDEHLVRFSPGSDYEAPN----- 68

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSS 502
                    L     +E  +K+ H  ++D   +  Y G+         + S ++ +    
Sbjct: 69  ---------LSAILADESRVKLYHFARFDLAAIQYYLGVVAAPVFCTKIASKLVRTYTDR 119

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLI 561
           H + ++  + L     E +  ++ S        +  Q E+A  +   + +L   L  +L 
Sbjct: 120 HGLKNLTDELLG----ESISKQQQSSDWGGPELNDAQREYAASDVRYLHRLRDELIVRLE 175

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITG 587
            E  + + +      +   + ++I G
Sbjct: 176 REGRMEIAQAC-FDFLPTRAALDIAG 200


>gi|288923665|ref|ZP_06417768.1| hypothetical protein FrEUN1fDRAFT_7466 [Frankia sp. EUN1f]
 gi|288344980|gb|EFC79406.1| hypothetical protein FrEUN1fDRAFT_7466 [Frankia sp. EUN1f]
          Length = 138

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940
               R A NA +QGSAA++ +   ++V + L    L  +++L +HDEL+  VP      A
Sbjct: 43  AAWGRFARNAVVQGSAAELFKAWAVTVRQLLV--PLGGEIVLCLHDELLLHVPTARAAEA 100

Query: 941 SQIIVHSMEK-ACLPKINLRVPLKVNIKVSNNWQEE 975
                 ++E  A        V    +I V   W + 
Sbjct: 101 VAATRRALESTAAYWAAGSNVRFVADITVVGRWSDA 136


>gi|153813586|ref|ZP_01966254.1| hypothetical protein RUMOBE_04009 [Ruminococcus obeum ATCC 29174]
 gi|149830331|gb|EDM85423.1| hypothetical protein RUMOBE_04009 [Ruminococcus obeum ATCC 29174]
          Length = 45

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 6  HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGF 41
           + L+DG S + RAFY  P L+   +G    A+ GF
Sbjct: 11 KILLIDGHSILNRAFYGLPDLTNA-EGKHTGAVYGF 45


>gi|49257042|dbj|BAD24831.1| hypothetical protein [Staphylococcus aureus]
          Length = 369

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 116/336 (34%), Gaps = 39/336 (11%)

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ-INCGDNPIIKNILEWRQLSKIKS 682
           +   +L   +          K    +      D    I        KN   + ++ ++  
Sbjct: 54  NEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEHFDKIEQLFD 113

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
               SL       T R++T  SL  T T R+ +   N+Q +P        +++  +    
Sbjct: 114 RLDQSL-----NGTNRLYTQLSLIGTRTHRITTKRFNVQGLPK------LVQQMILPSQF 162

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           KK+ + D+   E  + A++ +   L     +   ++  +  ++       +S + R   K
Sbjct: 163 KKVYTIDFKSFEPSVAAYMTQDEQLIDYLNHEEGLYDALLRDL------SLSKEKRVSVK 216

Query: 803 TINFS-IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
                  ++G        ++    SE      +   +F  + E+    K  V +   + T
Sbjct: 217 RAFIGSFLFGGRYSSSKFKINQEVSEINWL--QVMSKFKKVIEF----KEQVEKYKTMPT 270

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
            +G              +      + +   +Q  A+ I +  ++ V+K+  + K   K++
Sbjct: 271 PYGIE----------HDMSAFQGISIMAIYVQTVASYIFKHILLEVYKAQCEQK-TFKII 319

Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           + IHD ++ E  +      ++ +   M+       N
Sbjct: 320 VPIHDAIMIECDD---EVTARDVAQLMKSTANQLFN 352


>gi|317374933|sp|C5GPA7|FEN1_AJEDR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|317374934|sp|C5JVG7|FEN1_AJEDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 395

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P I     EA+   A         G      S D D +   SP    + T
Sbjct: 141 CKKLLKLMGVPYINAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I ++ V++   +  ++ V L  L G   D +  IP +G  TA  L++++
Sbjct: 196 FSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLG--CDYLDPIPKVGPNTALKLIRDH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E     + +R+L           P  +   E  +   
Sbjct: 254 GSLEKVVEAIQSDPKKKYT--IPEDWPY-KDARELFFDPDVRKADHPDCNFKWEAPDVEG 310

Query: 272 LISFLKA 278
           L+ FL  
Sbjct: 311 LVKFLVE 317


>gi|195970213|ref|NP_384368.2| hypothetical protein SMc00342 [Sinorhizobium meliloti 1021]
 gi|307306427|ref|ZP_07586171.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C]
 gi|307319314|ref|ZP_07598743.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83]
 gi|187904130|emb|CAC41699.2| Probable ribonuclease D [Sinorhizobium meliloti 1021]
 gi|306895150|gb|EFN25907.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83]
 gi|306902269|gb|EFN32866.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C]
          Length = 208

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 24/190 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G+ +    T  +     +   + +S+ D   D                 + S G
Sbjct: 16  DAARYTGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADV---------------IRISAG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +          L     +    KI H  ++D  VL H +G++        + S +  +  
Sbjct: 61  QKQAPN-----LVSMLADPTRQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     +I K ++SS     I      E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKELLDI---DISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARL 172

Query: 561 IVEKLLHVYE 570
           + +  + + E
Sbjct: 173 LRDGRMELAE 182


>gi|163794941|ref|ZP_02188910.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
 gi|159179760|gb|EDP64287.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
          Length = 203

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 66/219 (30%), Gaps = 44/219 (20%)

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
           T         L+     +    T  +     +   +  S+ D                + 
Sbjct: 4   TLHHGDLPDGLDLGSVVAIDSETMGLRPIRDRLCVVQFSSGDG---------------TA 48

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLM 492
           H  Q + G+          L +   +   LK+ H  ++D  VL  + G++        + 
Sbjct: 49  HLVQFAPGEYDAPN-----LTRMLTDPDVLKLFHFARFDVAVLQAFLGVATAPIYCTKIA 103

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           S ++ +    H +  + ++ +           K     D  +     E     ++ +L L
Sbjct: 104 SKLVRTYTDRHGLKDLCRELIGVDLS------KQQQSSDWGAAELTAEQLAYAASDVLHL 157

Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
              L+ +L +                ++++   TGI  D
Sbjct: 158 H-ALKDRLDI----------------MLAREGRTGIAAD 179


>gi|67921652|ref|ZP_00515170.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
 gi|67856764|gb|EAM52005.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
          Length = 214

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 76/206 (36%), Gaps = 25/206 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +     + +++     + +    T  +     +   + +       D S  V  I I+
Sbjct: 13  VCDRDLSSETLERYLKADALAIDTETMGLVPQRDRLCLVQLC------DPSGYVTAIRIE 66

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDI 489
                + +              LK+  EN++ +KI H  ++D     + + +        
Sbjct: 67  RGQTEAPN--------------LKQLLENKNIVKIFHYARFDVGQFKYNFSVETDPIFCT 112

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +   SH + S+ Q+       E+ KS +SS   +  + S+ Q  +A  +   
Sbjct: 113 KVASKLARTYTGSHGLKSLVQELEGV---ELDKSSQSSDWGNSQNLSEAQLSYAANDVRY 169

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDK 574
           ++QL   L   L  E+   + ++  K
Sbjct: 170 LIQLREQLITMLKREERWEIAQKCMK 195


>gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799]
 gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799]
          Length = 374

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 71/210 (33%), Gaps = 28/210 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N  D+    ++     + +           H++   I +                 
Sbjct: 8   QWIDNDDDLAALCRQCRQKDAVALDTEFVRTRTLHAQLGLIQL----------------- 50

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
                +  +     + L  + L  L +   +++ +K+ H+   D  +   R G+  +   
Sbjct: 51  -----YDGETLALIDPLEIQDLGPLWQLIADKNVVKVLHSASEDLEIFAYRGGVIPQPLF 105

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  +   +L+ G  +     +   +L     E+ K    +  + +    +   +A  +  
Sbjct: 106 DTQVAGVLLNLG-GAMGYGKLIHHYLGL---ELDKGEARTDWLKRPLSEKQLTYAAADVY 161

Query: 548 VILQLWLLLRPKLIVEK-LLHVYERLDKPM 576
            +LQ++ ++RP +     L  +++  ++  
Sbjct: 162 YLLQVYRMMRPAIEEMGRLDWLWQEGERAC 191


>gi|218661189|ref|ZP_03517119.1| ribonuclease III protein [Rhizobium etli IE4771]
          Length = 208

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G+ +    T  +     +   + +S  D   D                 + + G
Sbjct: 16  DAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADV---------------IRIAAG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +          L    E+    KI H  ++D  VL H +G++        + S ++ +  
Sbjct: 61  QKEAPN-----LVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     +I K+++SS    +       E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKEMLDI---DISKTQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARL 172

Query: 561 IVEK 564
           I + 
Sbjct: 173 IRDG 176


>gi|322796178|gb|EFZ18754.1| hypothetical protein SINV_08354 [Solenopsis invicta]
          Length = 1253

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 101/344 (29%), Gaps = 92/344 (26%)

Query: 676  QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            + +K  + Y   +P  +   T           T +        N     I ++L   I  
Sbjct: 844  KRTKRHTRYGAIIPQVVVSGTLTRRAVEPTWMTAS--------NAHVERIGSELRCMI-- 893

Query: 736  AFISPPTKKLISADYSQIELRIL-----AHIAKITP--------LYQVFENSLDIHRMVA 782
               +PP   ++ AD    EL I      AH  +I          L     N  D+H + A
Sbjct: 894  --QAPPGYNIVGADVDSQELWIASVIGDAHYKRIHGATPFGWMTLIGTKSNGTDMHSVTA 951

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLRIPRSEAADYIK--RYFH 837
              I            R HAK IN++ IYG       RL  Q     ++A    K  + F 
Sbjct: 952  KAI---------GISRDHAKVINYARIYGAGQKFAERLLKQFNPSMTDAEAISKSRKMFA 1002

Query: 838  RFPGIHEYIEKTK-----------------NFVRQNGYV--------------------- 859
               G   Y  KT+                 +  + +G                       
Sbjct: 1003 LTKGKKIYRLKTEFINDDLQNISYTSSQAYHIAKLHGKGLQDIFQKSEWIDGSESAMFNR 1062

Query: 860  ----------ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
                       T F        +    +   +      IN  +Q  A D     ++S+  
Sbjct: 1063 LEQIAGSEHPITPFLNARLSRALEITNTDDDDKFLPTKINWVVQSGAVDFLHLMLVSMRW 1122

Query: 910  SLEDHKLATKMLLQIHDELVFEVPEEEI--TTASQIIVHSMEKA 951
             ++D     +  L  HDE+ + VP         +  + + M +A
Sbjct: 1123 LMKD---NARFCLSFHDEVRYLVPSRYKYNAALAMHVTNLMTRA 1163


>gi|115402747|ref|XP_001217450.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
 gi|114189296|gb|EAU30996.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
          Length = 402

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 24/189 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 148 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 202

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++   +   K + L  L G   D +  IP +G  TA  L++++
Sbjct: 203 FSEQRKEPIQEIHLSRALEGLDMDRAKFIDLCILLG--CDYLEPIPKVGPNTALKLIRDH 260

Query: 212 GNLENILINASRIKQKKR---RENILEYAETARLSRKLVMLRTDVPITIPLE-HLILEDC 267
           G+LE ++       +KK     +   + A    L         DV      E     E  
Sbjct: 261 GSLEKVVEYIQNDPKKKYVIPEDWPYQDARELFL-------HPDVRDANDPECDFKWEAP 313

Query: 268 NGPRLISFL 276
           +   L+ FL
Sbjct: 314 DIEGLVEFL 322


>gi|310005711|gb|ADP00098.1| exonuclease [Cyanophage NATL1A-7]
          Length = 254

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 77/212 (36%), Gaps = 33/212 (15%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG--IPAIEIQGFEADD 119
            ++F   +  FR +I PDYK +R +            +    A       I   G EADD
Sbjct: 59  IILFFSDSTNFRKKILPDYKGHRNRKKPCGY------KRVINALRKEYKVIIKPGLEADD 112

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
            +  Y+           I S DKD+ Q+        +T     I+ +      G     +
Sbjct: 113 SMGIYSTKYPGN----IIASPDKDMRQIPGQLYNFNETFT---IEPDE-----GATWHLI 160

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG-NLENILINASRIKQKKRRENILEYAE 238
              Q L+GD  D   G+PG+G K A  + +E G + + +L      K+K   E      +
Sbjct: 161 ---QCLSGDQTDGYGGVPGVGVKRAETIFKEKGCSWKTVLE---TFKEKGLTE------D 208

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
            A ++ +L  + T        +   L      
Sbjct: 209 DALVNARLARILTADDYDFNKKQPKLWSPASD 240


>gi|46201483|ref|ZP_00054962.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 203

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 61/196 (31%), Gaps = 24/196 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L+     +    T  ++    +   + +S  D           +        
Sbjct: 6   HKNDLPDGLDLGNLVAIDSETMGLNLQRDRLCVVQLSAGDG------HAHVVHYPKPEWN 59

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSY 494
           S +              L +   +    K+ H  ++D  ++ +Y G+         + S 
Sbjct: 60  SPN--------------LVRMLADPKVTKLFHFARFDVAMIRKYLGVRCNPLFCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +  +    H +  + +++L+    ++ K ++SS       ++    +A  +   + QL  
Sbjct: 106 LTRTNTEGHSLKVLCKEFLNI---DLSKLQQSSDWGAPELNADQLAYAASDVLYLHQLKD 162

Query: 555 LLRPKLIVEKLLHVYE 570
            L   L  E    + E
Sbjct: 163 RLDMLLDREGRRALAE 178


>gi|288931681|ref|YP_003435741.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
           10642]
 gi|288893929|gb|ADC65466.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
           10642]
          Length = 336

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 81/223 (36%), Gaps = 39/223 (17%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  GIP ++    E +   A      + +       S D D +   SP      TV
Sbjct: 134 KTLLEYLGIPYVQAPS-EGEAQAAYMVRKGDAD----YTGSQDYDSLLFGSPKLARNLTV 188

Query: 159 KE---------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
                            E ID+E  +KK GI  E+++ +  L G   D   G+ GIG K 
Sbjct: 189 TGKRKLPGKNVYVEIKPEIIDLEANLKKLGITREQLIDVAILVG--TDYNEGVKGIGAKK 246

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           A   ++ YG+++ +L         K     +E+ +  R          + P T   E + 
Sbjct: 247 ALKYVKTYGDVKKVL---------KVLRVEIEHLDEIR------EFFLNPPTTDDYE-IK 290

Query: 264 LEDCNGPRLISFL-KALEFTKLINRVATTYDCDAANIEPVVLD 305
                  ++I FL +  +F++     A     +  +   + LD
Sbjct: 291 FRKPKKDKVIEFLCEEHDFSRERVEKAVERIEENISSSQITLD 333


>gi|254438617|ref|ZP_05052111.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307]
 gi|198254063|gb|EDY78377.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307]
          Length = 203

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 76/214 (35%), Gaps = 25/214 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   I +S+ D                + H  
Sbjct: 7   QHDLPDDLDLGPVVAIDCETMGLNPHRDRLCLIQLSSGDG---------------NCHLI 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q S G+ T        L K   +   LK+ H  ++D   +   +G          + S +
Sbjct: 52  QISVGQTTAPN-----LCKVLADPQVLKLFHFGRFDIAAMLNAFGTVTAPVYCTKIASKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H + ++ Q++L   R +I K ++ S    +       ++A  +   + QL   
Sbjct: 107 IRTYTDRHGLKNLLQEFL---RVDISKFQQQSDWGAETLSKAQIDYAASDVLYLHQLRDE 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           L  +L+ E+   + +      + + +++++ G  
Sbjct: 164 LNIRLVRERRTDMAQAC-FDFLPMRAKLDLAGWP 196


>gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
 gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
          Length = 381

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 28/196 (14%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           YT I +   ++Q   +L      +  +  D+M  +  K   + +S               
Sbjct: 6   YTVIEHNHQLEQLCAELTDETELALDLEADSMHHYREKVCLLQLSNRAG----------- 54

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGF 486
                      +   + L    LS L+          + H   YD   LHR +GI ++  
Sbjct: 55  -----------TWLVDPLRLSDLSPLRVLLARPGLRTVLHGGDYDIRSLHRDFGIVVQQM 103

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D M+ +    +G +   +A++ ++       E+ K  + +    +   +++ ++A  ++
Sbjct: 104 FDTMVAAQF--TGATEFGLAALLREHFGI---ELDKRFQKADWSKRPLTTEMADYAAHDT 158

Query: 547 NVILQLWLLLRPKLIV 562
             +L+L   L  +L  
Sbjct: 159 AHLLELADRLHARLEQ 174


>gi|28380019|sp|Q976H6|FEN_SULTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 351

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 24/189 (12%)

Query: 99  RLATQAFGIPAIEIQG---FEADDI-IATYTYIAEKEGFAVTIISTDK--DLMQLVS--- 149
           +   +A GIP ++       EA  I I   ++    + +   +    +    + L     
Sbjct: 138 KELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFGAKRLIRNLTLSGKRK 197

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  +K E I+++ ++KK G+  E+++ +  + G   D  P GI G G KTA  +
Sbjct: 198 LPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVG--TDYNPDGIKGYGVKTAYRI 255

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           +++YG+LE  +     I + K   N+ E   +  L  ++V  +         E+L L DC
Sbjct: 256 IKKYGSLEKAIEK-GEIPKIKVNFNVEEIR-SLFLKPQVVEPK---------ENLELVDC 304

Query: 268 NGPRLISFL 276
           +  +++  L
Sbjct: 305 DSNKILDIL 313


>gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
 gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
          Length = 209

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 61/202 (30%), Gaps = 25/202 (12%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + +    T  ++    +   + IS  D   D                             
Sbjct: 24  AIAIDTETLGLNPHRDRLCVVQISRGDGSADVVQIRPGDPAP------------------ 65

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               LK    +   +KI H  ++D  VL   +G+         + S +  +    H +  
Sbjct: 66  --ERLKAVLADPQIVKIFHFARFDLAVLFKAFGVMPMPVYCTKVASKLARTYTDRHGLKD 123

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           + ++ +     ++ K ++SS    +       ++A  +   +      L   L  E    
Sbjct: 124 VVRELVGV---DLSKQQQSSDWGAEALSQAQIDYAASDVLHLHAARERLDAMLAREGRTE 180

Query: 568 VYERLDKPMIDVVSQMEITGIQ 589
           + +      +   +++++ G  
Sbjct: 181 MAQAC-FDFLPTRAKLDLAGWP 201


>gi|167945574|ref|ZP_02532648.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 58

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           +  LE+  ++L+G  FN++SPKQ+G I F +L  P  AKT  G   T    L+++   
Sbjct: 1   MHQLEQQAHELAGHSFNMASPKQIGHIFFEELGLPVIAKTPKGAPSTAESVLQELADQ 58


>gi|89052719|ref|YP_508170.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
 gi|88862268|gb|ABD53145.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
          Length = 203

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 69/212 (32%), Gaps = 25/212 (11%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
                LE     +    T  +     +   I +S  D                + H  Q 
Sbjct: 9   DLPDDLELGPIVAIDCETMGLHPHRDRLCVIQLSDGDG---------------NAHLVQV 53

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLD 497
           + G+          L    E+ + LK+ H  ++D   + H +G          + S ++ 
Sbjct: 54  AKGQTAAPN-----LCALLEDPNTLKLFHFGRFDIAAMYHAFGALTAPVYCTKIASKLVR 108

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           +    H + ++ Q+ L     +I K ++SS            ++A  +   +  +   L 
Sbjct: 109 TYTDRHGLKNLLQELLGI---DISKQQQSSDWGADSLTEAQVDYAASDVLYLHGVKDKLD 165

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             L  E    + +      + + +++++ G  
Sbjct: 166 VMLAREGRTELAQAC-FDFLPMRAKLDLAGWP 196


>gi|83313031|ref|YP_423295.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82947872|dbj|BAE52736.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 203

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 60/196 (30%), Gaps = 24/196 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L+     +    T  ++    +   + +S  D           +        
Sbjct: 6   HKNDLPDGLDLGNLVAIDSETMGLNLQRDRLCVVQLSAGDG------HAHVVHYPKPEWN 59

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSY 494
           S +              L +   +    K+ H  ++D  ++ RY G+         + S 
Sbjct: 60  SPN--------------LVRMLADSKVTKLFHFARFDVAMIRRYLGVRCTPVFCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +  +    H +  + +++L+    ++ K ++SS        +    +A  +   + QL  
Sbjct: 106 LTRTNTEGHSLKVLCKEFLNI---DLSKLQQSSDWGAPELTADQLAYAASDVLYLHQLKD 162

Query: 555 LLRPKLIVEKLLHVYE 570
            L   L  E    + E
Sbjct: 163 RLDALLDREGRRALAE 178


>gi|148508143|gb|ABQ75935.1| flap structure-specific endonuclease [uncultured haloarchaeon]
          Length = 337

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 85/248 (34%), Gaps = 45/248 (18%)

Query: 7   LFLVDGSSFIYRAF------YATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  VD  +++YR +      + +        G+ V  + G    L K  ++   +     
Sbjct: 35  VIAVDAHNWLYR-YLTTTVKFTSDAAYTTESGVEVANLIGVVQGLPKFFEH---DLTP-- 88

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPE-----------------MLLPQL--PLVRL- 100
              +FD      ++E   + +  R +  E                     Q     +   
Sbjct: 89  -VFVFDGGVTELKDEEVQERRVAREEAVELQAAAEERGDELAASRLEARTQRLTETIHET 147

Query: 101 ---ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                    +P IE    E +   A      + +     + S D D +   +P T    T
Sbjct: 148 TRGLLNRLDVPIIEAPA-EGEAQAAEMAIRGDVD----YVGSEDYDTLLFGAPYTVRQLT 202

Query: 158 VKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
            K   E +D++  +K   +  E++V +  L G   D   GI GIG  TA   + ++G+L 
Sbjct: 203 SKGDPELMDLQTTLKNQNLTREQLVDVAILCG--TDFNDGISGIGPATAISAINDHGDLW 260

Query: 216 NILINASR 223
           ++L     
Sbjct: 261 SVLDARDE 268


>gi|47934632|gb|AAT39754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 79

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPI-KTDLGQKIRRAFISPPTKKLISADYSQIE 754
           T R+H   +    +TGR+    PNL  +P   +  G+  R  F       L+  D S +E
Sbjct: 6   TGRIHGKVNTCGAVTGRMTHSSPNLAQVPASHSPYGEDCRELFTVEDGYCLVGMDASGLE 65

Query: 755 LRILAHIAKITPL 767
           LR+LAH       
Sbjct: 66  LRMLAHYMNDEDY 78


>gi|149408177|ref|YP_001294611.1| hypothetical protein ORF018 [Pseudomonas phage PA11]
          Length = 290

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 29/198 (14%)

Query: 70  VTFRNEI--YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ---GFEADDIIATY 124
             FR  I    +YKA R         + P        + +   E +   G EADD+++  
Sbjct: 86  PNFRESIAKKKEYKAGRNP-------EKPFHYDNLLVYLLANYECEMAFGMEADDLMSIK 138

Query: 125 TYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK--KWGIPPEK--- 178
            +   K+G     I + DKDL  +       ++  ++ +     V +  +  I  +K   
Sbjct: 139 QWGRVKDGHLDTIICTRDKDLR-ITPGMHFGWECGRQVQYGPARVTELGEIRITKDKKKI 197

Query: 179 ------MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
                     Q +TGDS DNIPG+PG G  TA   + +  +   +      + + K  +N
Sbjct: 198 IGNGLKFFYSQLVTGDSTDNIPGVPGGGPVTAFESVHDAESEAELFERVGALYKNKYGDN 257

Query: 233 ----ILEYAETARLSRKL 246
               + E A+   + R+L
Sbjct: 258 WEAEMREQADLLWMVREL 275


>gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 550

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 107/327 (32%), Gaps = 36/327 (11%)

Query: 257 IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI---EPVVLDINTTENKG 313
           +  E L  ED +   +   L A       +R A     +       +    DI+  +  G
Sbjct: 247 VEWEKLYAEDPDYADVADRLHATNHPASTSRHANGRKAEPPPTPSSQDSPSDISNLDTSG 306

Query: 314 IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373
                E+   TTI+ +  S             T              Y I      ++++
Sbjct: 307 RRHRDEVTHGTTIRNNDQSFDLPSHGGQVDGSTTASRVRRTDDDHDGYRI------EVMS 360

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
                 +++ + + G A + I T  ++ +  +   + ++  ++                 
Sbjct: 361 QDVTPDFLRYIYSTGKAGWDIETTGLNWYADRICTVQLACGNRVAVVQLPEGHTP----- 415

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
                              L +   +++ LKI HN ++D   + + + +  +     + +
Sbjct: 416 -----------------QRLSQILGDQNILKIFHNARFDLRFMVYHWSVIPQNVACTLEL 458

Query: 493 SYVLDS-GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
             +L+   R+ H +  + +++L+     I     S     +++  Q+  +A  +   +  
Sbjct: 459 VRLLNPRERAGHTLREVLERYLAVQI--IKDQTCSDWTTAQLTQEQI-RYATNDVRYLPV 515

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMID 578
           L+ LL       +L     R  + M+ 
Sbjct: 516 LFDLLMNMARERRLEEAAMRRFRQMLK 542


>gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 300

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 70/242 (28%), Gaps = 67/242 (27%)

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693
            + L+            + T +           + + +   RQ S   +    +L N  +
Sbjct: 1   MSGLRLTCRPNALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 60

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI-------------------- 733
              +   T     ++ TGR A       N+P  T     I                    
Sbjct: 61  GDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVM 120

Query: 734 -------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF--------------- 771
                  R   I+P  KKL+ AD S IE R+LA +A  TP  Q F               
Sbjct: 121 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHS 180

Query: 772 -------------------------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806
                                        DI++   A  FG+  + V+ Q R+  K    
Sbjct: 181 GEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 240

Query: 807 SI 808
           ++
Sbjct: 241 AL 242


>gi|159475218|ref|XP_001695720.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
 gi|317374883|sp|A8J2Z9|FEN1_CHLRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|158275731|gb|EDP01507.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
          Length = 396

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 85/281 (30%), Gaps = 49/281 (17%)

Query: 25  LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR 84
            L     G   + + G   M ++  +         +   +FD      + +        R
Sbjct: 52  QLLTNEAGEITSHLQG---MFFRTAKMLEAGIKPVY---VFDGKPPQLKQDQLAQRTERR 105

Query: 85  PKIPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDII 121
               E L                              +   +  G+P +E    EA+   
Sbjct: 106 ADANEALEKAKEAGDQEAIEKYSKRSVRVTREHNDECKRLLRLMGVPVVEAP-TEAEAQC 164

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD------TVKEEKIDIEHVIKKWGIP 175
           A         G    + + D D +   +P    +        V  ++ D E  +++  + 
Sbjct: 165 AEMAK----SGLVYGLATEDMDALTFGAPRVIRHLMAPSSQNVPVQEFDREVALRELELT 220

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235
            ++ + L  L G   D    I GIG   A  +++++G++E +L      K          
Sbjct: 221 DDQFIDLCILMG--CDYCGTIRGIGAVRALQMIKKHGSIEGMLKELDPAKYPVPEP--FP 276

Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           + E+    +       +V  +  +  L     +   L+ FL
Sbjct: 277 HKESHEFFK-----NPEVTPSAEIPPLKWTAPDEEGLVQFL 312


>gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex]
          Length = 834

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 105/307 (34%), Gaps = 47/307 (15%)

Query: 346 TPQKLFLERLQKLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
           TP   F   L ++  +P +       I   + ++  ++ L      +  +   +  +F  
Sbjct: 210 TPDPKFFTVLDEVPPFPSVQEIPLVMIDTEQGLKSLLKDLLEETVIAVDLEAHSYRSFQG 269

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
               + IST                     +S D         + L  L + F N   +K
Sbjct: 270 LTCLMQIST---------------------SSSDYIIDTLELWDQLQPLNEVFCNPKIVK 308

Query: 465 IGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           I H    D   L R +GI +    D    + +L         A ++  +L     +++  
Sbjct: 309 IFHGADMDIQWLQRDFGIYVVNLFDTYHAAKLL-------GFAQLSLSFLLRHYCQVIAD 361

Query: 524 RKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-----LLHVYERLDKPM 576
           ++  +   +I     Q+  +A E+++ +  ++  ++  L ++      L  V++      
Sbjct: 362 KQYQLADWRIRPLPEQMVNYAREDTHYLGYIYEKMKKDLKMKGTGDNLLTAVWQNSRLVC 421

Query: 577 I------DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK--- 627
           +       + ++  +   ++ + +  +      K L +  + I     E      PK   
Sbjct: 422 LKRYRIPPITAESHLELYRLSKKIFNERQLFALKELFAWRDRIAREEDESTGFVLPKHML 481

Query: 628 -QLGDIL 633
            Q+ D+L
Sbjct: 482 LQIADVL 488


>gi|58390636|ref|XP_317855.2| AGAP011448-PA [Anopheles gambiae str. PEST]
 gi|74802123|sp|Q7Q323|FEN1_ANOGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|55237026|gb|EAA13029.2| AGAP011448-PA [Anopheles gambiae str. PEST]
          Length = 383

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 21/184 (11%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  G+P +E    EA+   A         G      + D D +   S     + T 
Sbjct: 142 KELLRLMGVPYVEAPC-EAEAQCAALVR----AGKVYATATEDMDALTFGSNILLRHLTF 196

Query: 159 KE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            E      ++   E V+K + +  ++ + L  L G   D    I GIG K A  L+ ++ 
Sbjct: 197 SEARKMPVQEFAYEKVLKGFELTQDEFIDLCILLG--CDYCDTIRGIGPKKAIELINKHR 254

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL 272
           ++E IL +  R K            E A   RKL   +           L   + +   L
Sbjct: 255 SIEKILEHLDRQKYIVPEGW---NYEQA---RKL--FKEPEVQDADTIELKWSEPDEEGL 306

Query: 273 ISFL 276
           + FL
Sbjct: 307 VKFL 310


>gi|328774021|gb|EGF84058.1| hypothetical protein BATDEDRAFT_2594 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 284

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 89/277 (32%), Gaps = 47/277 (16%)

Query: 27  SRKHDGLPVNA--IAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR 84
            R  DG  ++   I GF   + KLL              +FD      + +     +  R
Sbjct: 17  MRSRDGNLLHGAHIIGFFRRICKLL------FYGILPVFVFDGATPALKRQTIASRRHRR 70

Query: 85  PKIPEMLLPQLPLV---------------------RLATQAFGIPAIEIQGFEADDIIAT 123
             + + L      +                      L    FGIP I +   EA+   A 
Sbjct: 71  ATVEQSLRKTAERILSLQLQKRALIVNWQQRKSCVPLLLFIFGIPYI-VATTEAESQCAF 129

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPPEKMV 180
                  EG    I++ D D+               T   E   ++ + ++ G+  EK++
Sbjct: 130 LQKQGLVEG----IVTDDSDVFVFGGEVVYKNMFTQTRSVEIYTMDRLQEQLGLSREKLI 185

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L G   D  PG+ GIG  T+  +L E+        N    K  +     L+  +  
Sbjct: 186 LLAYLLG--SDYTPGLVGIGPVTSVEILNEW-------CNLDYSKGGRNLAKKLDIPDGF 236

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277
              R L      V +   L +    + +   +  FL+
Sbjct: 237 PDLRVLNAYINPV-VDQDLTNFTWGEPDLEGIRHFLE 272


>gi|317376190|sp|D3BN56|FEN1_POLPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|281203217|gb|EFA77418.1| XPG [Polysphondylium pallidum PN500]
          Length = 388

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 102/288 (35%), Gaps = 56/288 (19%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN-EIYPDYKANRPKI 87
             +G   + + G   M ++ ++   +     +   +FD  A   ++ E+   Y A R + 
Sbjct: 56  NANGETTSHLQG---MFYRTIKLMTRGIKPIY---VFDGKAPVLKSGELAKRY-ARRKEA 108

Query: 88  PEML-----------------------LPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                         Q    +   +  G+P ++    EA+   A  
Sbjct: 109 EQQLEEANEVGNSEDVQKFQKRTISASRKQNEECKKLLELMGVPIVQAPC-EAEAQCAEL 167

Query: 125 TY--IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPP 176
                A   G      S D D + L +       T  E +      I++E V+    +  
Sbjct: 168 CKGGKAWATG------SEDMDSLTLGTTILLRRLTFSEARKLPIMEIELEKVLDGLDLTH 221

Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236
           ++ V L  L G   D    I GIG K +  ++ ++ N++ ++ N  R K     E+   Y
Sbjct: 222 DQFVDLCILLG--CDYCDTIKGIGPKKSFDMITKHKNIQTVIQNIDRTKNP-IPESF-PY 277

Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL-KALEFTK 283
            E   L +       DV     L  ++ ++ +   LI +L   + F +
Sbjct: 278 EEVRELFK-----NPDVIKCQDLPEIVWKEPDVDGLIKYLVGEMGFNE 320


>gi|328874795|gb|EGG23160.1| XPG [Dictyostelium fasciculatum]
          Length = 308

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 80/258 (31%), Gaps = 52/258 (20%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIA 58
           E  +  VD S+ +Y+   A    +        G   + + G F   +  +    +     
Sbjct: 42  EGRIIAVDTSNNLYQFLTAIGTENGSSLMNSIGETTSHLQGTFYRTIKFMSNGIKP---- 97

Query: 59  SHFAVIFDYPAVT-------FRNEIYPDYKANRPKIPE----------------MLLPQL 95
                +FD    T        R+    + K N  +  E                    Q 
Sbjct: 98  ---VFVFDGAPPTLKSGELAKRSAKKKEAKENLDEAKETGTTEDVAKFSKRTTSATRKQN 154

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTY--IAEKEGFAVTIISTDKDLM----QLVS 149
                     GIP +     EA+   A       A   G      S D D +    +++ 
Sbjct: 155 EECIKLLTLMGIPVVRAPC-EAEAQCAELVKGGKAWASG------SEDMDSLAFGTKILL 207

Query: 150 PTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
                 D  K    + D E ++   G   ++ + L  L G   D    I GIG   A  L
Sbjct: 208 RNLTASDQKKNPLWEFDHEKLLYGTGFTHDQFIDLCILLG--CDYCESIRGIGPVRAFEL 265

Query: 208 LQEYGNLENILINASRIK 225
           +Q++ ++E ++ +    K
Sbjct: 266 MQKHKSIEEVVKHLDPTK 283


>gi|329888476|ref|ZP_08267074.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328847032|gb|EGF96594.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 204

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK+   +   LKI H  ++D  +     G+  R      + S +  +    H +  +A++
Sbjct: 63  LKRLLTDPKVLKIFHFGRFDIGMFDLHLGVETRPVYCTKIASKLARTYTDRHGLKDVAKE 122

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
                        + S        SQ Q ++A  +   +  +   L   L+ E  + + +
Sbjct: 123 LAGVDMS----KAQQSSDWGAAELSQAQLDYAASDVLYLHAIMNRLNEMLVREGRMELAQ 178

Query: 571 RLDKPMIDVVSQMEITG 587
                 + V S++++ G
Sbjct: 179 AC-FDFLPVRSRLDLAG 194


>gi|255713324|ref|XP_002552944.1| KLTH0D05126p [Lachancea thermotolerans]
 gi|317374904|sp|C5DGG4|FEN1_LACTC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|238934324|emb|CAR22506.1| KLTH0D05126p [Lachancea thermotolerans]
          Length = 385

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 77/265 (29%), Gaps = 38/265 (14%)

Query: 81  KANR---PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTI 137
           K  R      PE         +   +  G+P +E    EA+   A         G     
Sbjct: 123 KHERRLVKVTPEH----NEEAKKLLRLMGLPYVEAPC-EAEAQCAELAK----AGKVYAA 173

Query: 138 ISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
            S D D +   +P    + T  E       +I+ E +++   +  E+ + L  + G   D
Sbjct: 174 ASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEINTEILLQGLELSIEQFIDLGIMLG--CD 231

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINAS----RIKQKKRRENILEYAETARLSRKLV 247
               I G+G  TA  L++E+  LENI+          K K       + A    L   +V
Sbjct: 232 YCDSIRGVGPVTALKLIKEHKTLENIVEYIESGQANNKWKVPENWPFKEARQLFLDPDVV 291

Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATTYDCDAANIEP 301
                         L   +     L+ F               I R+             
Sbjct: 292 K--------GSEVDLKWSEPQEQELVDFMCKEKGFNEERIRSGIKRLQKGLKTGVQGRLD 343

Query: 302 VVLDINTTENKGIAIETEIDRDTTI 326
               +     + +A      + T  
Sbjct: 344 GFFKVKPKNKEQLAAANAKAKSTKA 368


>gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 945

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 89/260 (34%), Gaps = 31/260 (11%)

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
            +    E + + +                S      +      P +  L  + +      
Sbjct: 229 AEQQRKEARPLGVLQNTFNPKVPFAHDLGSFPHPYERELLAFEPAETQLTAVAEQLYRTD 288

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
               +T I + +++  + ++L ++   +  +   +  +       + +ST          
Sbjct: 289 EETPFTWIDSEEELIDFARRLSSVSEFAIDLEHHSYRSLQGFVCLMQVST---------- 338

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGIS 482
                       ++D        +  + +L++ F N + LK+ H    D + L H +GI 
Sbjct: 339 -----------RTEDVVIDTLAVRSSMHHLREVFANPNILKVFHGADMDVVWLQHDFGIY 387

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQE 540
                D    + VL+       + S +   L      +   +K  +   +I    +++ +
Sbjct: 388 TINMFDTGQAARVLE-------LGSYSLAHLLRYFCNVTADKKYQLADWRIRPIPAEMLQ 440

Query: 541 HAIENSNVILQLWLLLRPKL 560
           +A E+++ +L ++  LR +L
Sbjct: 441 YAREDTHYLLYIYDRLRNEL 460


>gi|251811418|ref|ZP_04825891.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805047|gb|EES57704.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 369

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 100/254 (39%), Gaps = 31/254 (12%)

Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755
           T R++T  SL  T T R+ +   N+Q +P        +++  +    KK+ + D+   E 
Sbjct: 122 TNRLYTQLSLIGTRTHRITTKRFNVQGLPK------LVQQTILPSQFKKVYTIDFKSFEP 175

Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS-IIYGISP 814
            + A++ +   L         ++  +  ++       +S + R   K       ++G   
Sbjct: 176 SVAAYMTQDEQLIDYLNLEEGLYDALLRDL------SLSKEKRVSVKRAFIGSFLFGGRY 229

Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874
                ++    SE      +   +F  I E+    K  V +   + T +G          
Sbjct: 230 SSSKFKINQEVSEINWL--QVMSKFKKIIEF----KEQVEKYKTMPTPYGIE-------- 275

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
               +      + +   +Q  A+ I +  ++ V+K+  + K   K+++ IHD ++ E  +
Sbjct: 276 --HDMSAFQGSSIMAIYVQTVASYIFKHILLEVYKAQCEQK-TFKIIVPIHDAIMIECND 332

Query: 935 EEITT-ASQIIVHS 947
           +EI    +Q++  +
Sbjct: 333 KEIAQSVAQLMKDT 346


>gi|294660024|ref|XP_462477.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
 gi|199434412|emb|CAG90987.2| DEHA2G21494p [Debaryomyces hansenii]
          Length = 1034

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 22/142 (15%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+   + FGIP I     EA+   A    +   +G    II+ D D              
Sbjct: 775 VQELLRRFGIPYITAP-MEAEAQCAELLKLNLVDG----IITDDSDCFLFGGDKVYKNMF 829

Query: 158 VKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            +++ ++   +  +  + G+  EK++ L  L G   D   GI GIG   A  +L E+G+L
Sbjct: 830 NQKQYVECYIMNDINSRMGLSQEKLIDLALLLG--SDYTEGIKGIGPVMAMEILAEFGSL 887

Query: 215 ENILINASRIKQKKRRENILEY 236
                       KK ++   E 
Sbjct: 888 ------------KKFKQWFDEN 897


>gi|326536130|ref|YP_004300562.1| gp6 [Enterobacteria phage 285P]
 gi|256861519|gb|ACV32475.1| gp6 [Enterobacteria phage 285P]
          Length = 304

 Score = 60.4 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 24/245 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPV-NAIAG-FCNMLWKLLQNS---RKES 56
           + +  + ++DG   +++A  A+ + +   D         G   N+L   +++    +K  
Sbjct: 16  KSDKGVLVMDGDWLVFQAMAASEVETDWGDDCWTLECDHGKAWNILVDSIKSYASRKKAW 75

Query: 57  IASHFAVIFDYPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
             +   + F   +V +R E+  P YK NR    + +      V          +I     
Sbjct: 76  RDAPIVLAF-TDSVNWRKELVDPTYKENRKASRKPVGY-RAFVERVQACEDWTSILEDRL 133

Query: 116 EADDIIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
           E DD++      A+  GF    ++S DKD    +     L+ T     +  +     +  
Sbjct: 134 EGDDVMGIIGSGAKHFGFKKAVLVSCDKDFKT-IPDCDFLWCTTGN-ILTQDQTTADY-- 189

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKRREN 232
                   Q + GD  D   GIPG G  TA  L   Y           +      ++ + 
Sbjct: 190 ----WHIYQTIKGDLTDGYGGIPGWGETTAEWLENPY-----AFEQVEKTFKSGARKGQT 240

Query: 233 ILEYA 237
           +LE+ 
Sbjct: 241 VLEWK 245


>gi|283481241|emb|CAZ69357.1| putative endonuclease [Emiliania huxleyi virus 99B1]
          Length = 358

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 47/202 (23%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+      GIP ++    EA+   A Y       G A    + D D +   S     +  
Sbjct: 139 VKKMLTLMGIPVVQAPC-EAEATCAAYVKT----GKAYATATEDMDSLTFGSTYVIRHIN 193

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             ++K        + +++   GI  ++ + +  L+G   D    I GIG   A  L+QE+
Sbjct: 194 STDQKKQPTVEYSLPNILNDMGITMDQFIEICILSG--CDYTKTIKGIGPTRAYQLIQEH 251

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE----------- 260
             +E +L     + +KK  E                   T VP   P+E           
Sbjct: 252 STIEIVLD----VLKKKHGE---------------AQFSTMVPDDYPIEAVRDLFNNPDV 292

Query: 261 ----HLILEDCNGPRLISFLKA 278
                L     N   LI+FL  
Sbjct: 293 DITQELTWNTINRDALIAFLVE 314


>gi|315426143|dbj|BAJ47788.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
          Length = 344

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTY----IAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
              +A G+P +                     A  +     +  + + +  L        
Sbjct: 140 DLLKAMGVPYVMAPSEGEAQAAYMAAKGSVYAAGSQDMDSLLFGSPRLVRNLSIVGRRKL 199

Query: 156 DTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
              KE      E I ++ ++   G+  E+++ +  L G   D  P + G+G KTA  +++
Sbjct: 200 PGRKEYVEVVPEIIYLDKLLASLGLTREQLIDIGLLVG--TDYSPQVRGVGPKTALKIVK 257

Query: 210 EYGNLENILI 219
           EYG+LE  + 
Sbjct: 258 EYGSLEKAVE 267


>gi|115653109|ref|XP_001198503.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus
           purpuratus]
 gi|115960717|ref|XP_001189337.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus
           purpuratus]
          Length = 819

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 92/276 (33%), Gaps = 31/276 (11%)

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQK 349
           T+  +A    P V D   T  K    +T+        +   +       +   +   P  
Sbjct: 189 THKPNALKPLPEVFD---TTKKSFLTKTDSSSPAKRDSETQTEAYPHPYQHELDHLEPLP 245

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
             LE +   S  P+    +T +     +++  + L+     +  +   +  ++      +
Sbjct: 246 SQLEPVDDPSYTPLEATPFTLVDTVSKLEELSRSLKQSKEIAVDLEHHSYRSYLGFTCLM 305

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
            IST +                      D        +  L  L   F +   +K+ H  
Sbjct: 306 QISTAEH---------------------DYVVDTLELRSELQMLNDAFTDPKIVKVFHGA 344

Query: 470 KYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
             D   L R  G+ +    D    S  L  G   H +AS+  ++    + E  K  + + 
Sbjct: 345 NMDIDWLQRDLGLYVVNMFDTHQASRSL--GFPHHSLASLLSRY---CQVEADKQYQLAD 399

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
              +    ++  +A E+++ +L ++  ++ +LI   
Sbjct: 400 WRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRG 435


>gi|260948192|ref|XP_002618393.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
 gi|238848265|gb|EEQ37729.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
          Length = 1019

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+   + FGIP I     EA+   A    +   +G    I++ D D              
Sbjct: 765 VQELLKRFGIPYITAP-MEAEAQCAELFRMGLVDG----IVTDDSDCFLFGGSRIYKNMF 819

Query: 158 VKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            +++ ++    E +  K G+  +K++ L  L G   D   GI GIG   A  +L E+G L
Sbjct: 820 NQKQYVECYIAEDIKNKIGLDQDKLIELAMLLG--SDYTEGIKGIGPVMAMEILAEFGTL 877

Query: 215 EN 216
            N
Sbjct: 878 SN 879


>gi|254510165|ref|ZP_05122232.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11]
 gi|221533876|gb|EEE36864.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11]
          Length = 204

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 70/213 (32%), Gaps = 25/213 (11%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 L+     +    T  ++    +   I +S  D                  H  Q
Sbjct: 8   NDLPDGLDMGPIVAIDCETMGLNPHRDRLCVIQMSGGDGDC---------------HIVQ 52

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVL 496
              G+ +        L    E+ + LK+ H  ++D   + H +G          + S ++
Sbjct: 53  VEKGQASAPN-----LCAMLEDPNILKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H + ++ Q+ L     +I K ++ S    +       ++A  +   + +L   L
Sbjct: 108 RTYTDRHGLKNLCQELLGV---DISKQQQMSDWGAETLTDAQLDYAASDVLYLHRLREAL 164

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +L  E    V +      +   +++++ G  
Sbjct: 165 DGRLAREGRTEVAQAC-FDFLPTRAKLDLAGWP 196


>gi|150398650|ref|YP_001329117.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
 gi|150030165|gb|ABR62282.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
          Length = 208

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 24/190 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G+ +    T  +     +   + +S+ D   D                 + + G
Sbjct: 16  DAARYRGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADV---------------IRIAAG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +          L     +    KI H  ++D  VL H +G++        + S +  +  
Sbjct: 61  QKQAPN-----LVAMLSDPARQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     +I K ++SS     I      E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKELLDV---DISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARL 172

Query: 561 IVEKLLHVYE 570
           + +  + + E
Sbjct: 173 LRDGRMELAE 182


>gi|110668340|ref|YP_658151.1| flap endonuclease-1 [Haloquadratum walsbyi DSM 16790]
 gi|121684788|sp|Q18HK0|FEN_HALWD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|109626087|emb|CAJ52538.1| flap structure-specific endonuclease / DNA repair protein Rad2
           [Haloquadratum walsbyi DSM 16790]
          Length = 326

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 85/248 (34%), Gaps = 45/248 (18%)

Query: 7   LFLVDGSSFIYRAF------YATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60
           +  VD  +++YR +      + +        G+ V  + G    L K  ++   +     
Sbjct: 24  VIAVDAHNWLYR-YLTTTVKFTSDAAYTTESGVEVANLIGVVQGLPKFFEH---DLTP-- 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPE-----------------MLLPQL--PLVRL- 100
              +FD      ++E   + +  R +  E                     Q     +   
Sbjct: 78  -VFVFDGGVTELKDEEVQERRVAREEAVELQAAAEERGDELAASRLEARTQRLTETIHET 136

Query: 101 ---ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                    +P IE    E +   A      + +     + S D D +   +P T    T
Sbjct: 137 TRGLLNRLDVPIIEAPA-EGEAQAAEMAIRGDVD----YVGSEDYDTLLFGAPYTVRQLT 191

Query: 158 VKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
            K   E +D++  +K   +  E++V +  L G   D   GI GIG  TA   + ++G+L 
Sbjct: 192 SKGDPELMDLQTTLKNQNLTREQLVDVAILCG--TDFNDGISGIGPATAISAINDHGDLW 249

Query: 216 NILINASR 223
           ++L     
Sbjct: 250 SVLDARDE 257


>gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo]
          Length = 888

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 101/312 (32%), Gaps = 41/312 (13%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKG------- 313
           L  ++ + P+L               V   +   +A    P  L  +  E K        
Sbjct: 172 LHAKNISRPQLK--FSEKIDNSNTPFVPKLFIKPNALKPLPEALTKSGRERKERPEDLDV 229

Query: 314 IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373
            A   +       + ++    +          +P    L++ +     PI       I  
Sbjct: 230 PAALADFIHQQRTQQTEQDMFAHPYQYELEHFSPPDGVLKKPEPQMYRPIKETPCHFITT 289

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
             ++ +  +KL      +  +                          SF   T  + +S 
Sbjct: 290 LDELVELNEKLMNCKEFALDLE--------------------HHSYRSFLGLTCLMQIST 329

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLM 492
            T +D        +  +S L + F +   +K+ H    D   L + +G+ +    D    
Sbjct: 330 RT-EDFIIDTLELRSDMSILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQA 388

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVIL 550
           + +L+ G+  H +  + + + S     +   ++  +   +I     ++ ++A ++++ +L
Sbjct: 389 ARLLNLGK--HSLDHLLKLYCS-----VDADKQYQLADWRIRPLPEEMIQYARDDTHYLL 441

Query: 551 QLWLLLRPKLIV 562
            ++  +R  L  
Sbjct: 442 YIYDKMREALWE 453


>gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 71/220 (32%), Gaps = 54/220 (24%)

Query: 785 IFGVNIEKVSP--QMRRHAKTINFSIIYGISPFRLATQ----LRIPRSEAADYIKRYFHR 838
           +F V +E ++    +R+  K    ++ Y      L       + I  +E    +  + + 
Sbjct: 1   MFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVDSWRNA 60

Query: 839 FPGIHEYIEKTKNFV------------------RQNGY--VETIFGRRIHYD-------- 870
            P I  + +  +                      + G+  +E   GR + Y         
Sbjct: 61  NPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENS 120

Query: 871 -----------EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
                      ++N   S ++    +   N  +Q +A D+   ++  +  S        K
Sbjct: 121 WGSQVVEFMGLDLNRKWSKLKTYGGKLVEN-IVQATARDLLAISIARLEAS------GFK 173

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959
           ++  +HDE++ E+P        + I   M K       L 
Sbjct: 174 IVGHVHDEVIVEIPRGS--NGLKEIETIMNKPVDWAKGLN 211


>gi|317374926|sp|Q0CBS0|FEN1_ASPTN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 395

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+    EA+   A         G      S D D +   +P    + T
Sbjct: 141 CKKLLKLMGIPYIDAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFEAPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++      I +   ++   +   K + L  L G   D +  IP +G  TA  L++++
Sbjct: 196 FSEQRKEPIQEIHLSRALEGLDMDRAKFIDLCILLG--CDYLEPIPKVGPNTALKLIRDH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E       +R+L +         P      E  +   
Sbjct: 254 GSLEKVVEYIQNDPKKKY--VIPEDWPYQD-ARELFLHPDVRDANDPECDFKWEAPDIEG 310

Query: 272 LISFL 276
           L+ FL
Sbjct: 311 LVEFL 315


>gi|207343574|gb|EDZ71001.1| YKL113Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 261

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 69/211 (32%), Gaps = 28/211 (13%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYDT 157
           +      GIP I     EA+   A            V    S D D +   +P    + T
Sbjct: 19  QKLLGLMGIPYIIAP-TEAEAQCAELAKKG-----KVYAAASEDMDTLCYRTPFLLRHLT 72

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E       +ID E V++   +  E+ V L  + G   D    I G+G  TA  L++ +
Sbjct: 73  FSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLG--CDYCESIRGVGPVTALKLIKTH 130

Query: 212 GNLENILINASRIKQKKRRENILEYA--ETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           G++E I+      +    +  I E    + AR+     +      I     +L       
Sbjct: 131 GSIEKIVEFIESGESNNTKWKIPEDWPYKQARM-----LFLDPEVIDGNEINLKWSPPKE 185

Query: 270 PRLISF------LKALEFTKLINRVATTYDC 294
             LI +               I+R+      
Sbjct: 186 KELIEYLCDDKKFSEERVKSGISRLKKGLKS 216


>gi|126174091|ref|YP_001050240.1| ribonuclease D [Shewanella baltica OS155]
 gi|125997296|gb|ABN61371.1| ribonuclease D [Shewanella baltica OS155]
          Length = 369

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 71/233 (30%), Gaps = 33/233 (14%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            ++  + +   +   V + +                +++K   I             K  
Sbjct: 2   SAFQYVSDEASLNALVAQYKQSKILVLDTEFVRTRTYYAKLGLI--------QAYDGKTL 53

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMR 484
            +   +++                L+       + + +K+ H+   D  V   YG     
Sbjct: 54  ALIDPVALPD--------------LAQFWALLSDPNIVKLVHSCSEDLEVFAHYGKCQPT 99

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D  + + +   G      A + +  L    + I K    +  I +        +A  
Sbjct: 100 PLFDSQIAASLCGMGHGV-GYAKLVETCLG---EVIDKGESRTDWIRRPLTEAQLSYAAN 155

Query: 545 NSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   + QL+  L  KL  +  L  +YE  ++  +  ++  +     +D   LK
Sbjct: 156 DVLYLYQLYPQLEAKLSAQGRLAWLYEEGERMTLGRLADPD-----LDTAYLK 203


>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
          Length = 388

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 100/295 (33%), Gaps = 43/295 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +   + +  ++  L  + + +      +   F  +   + +ST D +         +   
Sbjct: 9   LDTVETVDTFLAGLNGVRAIALDTEGASFHRFVDRIYLLQLSTADHE--------AVIDP 60

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L + T               + L    E+     + H+  YD  +L + YG  +    D 
Sbjct: 61  LPIGTP--------------TRLGVLLEDPQVEVVLHDADYDLRLLRQDYGWRVTHLFDT 106

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + + +L  G  +  +A++ +++       + K  + +    +   + + ++A  ++  +
Sbjct: 107 RVAAQLL--GIRAFGLAALLEQFFGIK---LDKKHQRADWSMRPLTADMLDYAAHDTRHL 161

Query: 550 LQLWLLLRPKL--------IVEKLLHVYERLDKPMIDVVSQMEITGI----QIDQDLLKQ 597
           L L   L  +L          E+         +P     S + + G     + +   L++
Sbjct: 162 LGLRDRLHDELVQKGRWSWAQEEFTRAEGTRWEPEAPDTSFLRLKGARDLNRRELARLRE 221

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQL---GDILFTKLKFPSGAKTKTGQ 649
           +          L+   + ++G +  L   +Q     D LF    FP G      Q
Sbjct: 222 LVRWRDGIAAELDRATFRVAGNEVLLDLARQAPATRDALFAVKGFPRGMSESRAQ 276


>gi|156094601|ref|XP_001613337.1| flap exonuclease [Plasmodium vivax SaI-1]
 gi|317376189|sp|A5KAL1|FEN1_PLAVI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|148802211|gb|EDL43610.1| flap exonuclease, putative [Plasmodium vivax]
          Length = 623

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 107/322 (33%), Gaps = 60/322 (18%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             +  +D S  +Y+   A              G   + I+G  +   KL++N  K     
Sbjct: 28  GRVVAIDASMSLYQFIIAIRDSEQYGNLTNESGETTSHISGLMSRSIKLMENGLK---PI 84

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEML-----------------------LPQLP 96
           +   +FD      +          R K  E+L                         Q  
Sbjct: 85  Y---VFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTRKQNE 141

Query: 97  LVRLATQAFGIPAIEIQGFEADDII---------ATYTYIAEKEGFAVTIISTDKDLMQL 147
             +      GIP +E                   AT T  A+   F   I+  + +    
Sbjct: 142 EAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAS 201

Query: 148 VSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
            +      ++ K      +I++E V+K   +   + +    L G   D    I GIG KT
Sbjct: 202 SANQNKNKNSSKRGYILTEINLEQVLKGLNLSMNEFIDFCILCG--CDYCDTIKGIGSKT 259

Query: 204 AALLLQEYGNLENILINASRIKQKKRRE-NILEYAETARLSRKLVMLRTDVPITIPLEHL 262
           A  L++EY ++E I+ N  + K +       +E  ++  ++ K V+ + +V I       
Sbjct: 260 AYNLIKEYNSIEKIIENIDKNKYQVPSNFRFVEARDS-FINPK-VLPKEEVKID------ 311

Query: 263 ILEDCNGPRLISFL-KALEFTK 283
              +     L +FL K   F +
Sbjct: 312 -WCEPKIEELKNFLIKDYNFNE 332


>gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea sp. MED297]
 gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297]
          Length = 380

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 66/202 (32%), Gaps = 29/202 (14%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            D +  I N   + Q   +       +        D+F++    I +   DQ       V
Sbjct: 2   TDQFQWIDNNAALAQVADEWAAASVIALDTEFVRTDSFYAHLGLIQVGIEDQ-------V 54

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISM 483
             I               + L     + L +   +   +K+ H +  D  VL  + G+ +
Sbjct: 55  WLI---------------DPLQINDWAPLVRVLSDPAIVKVLHALSEDAEVLAHHLGVEL 99

Query: 484 RGFEDIMLMS-YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           +   D  + + ++    + S+     A+   +    E+ K    S  + +    +   +A
Sbjct: 100 QNVFDTQIAAGFLGHPVQMSY-----ARLVEAICDVELPKEATRSDWLQRPLADEQCFYA 154

Query: 543 IENSNVILQLWLLLRPKLIVEK 564
             +   + +++     +L  + 
Sbjct: 155 AADVLWLYRVYQHCAAQLKEQN 176


>gi|68059974|ref|XP_671969.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56488629|emb|CAI03948.1| hypothetical protein PB301454.00.0 [Plasmodium berghei]
          Length = 151

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 22/165 (13%)

Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKK 171
            +  +D           E     ++S D D +   +P    + T K+++  I+ + ++ +
Sbjct: 3   FYTKNDAEKECAIQCSHEKD--IVVSDDTDALAFGAPNLIRFITNKKKRHIINKDEILNE 60

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
             I  E+ +    L+G   D    IPGIG   A  ++++Y  +E  L +++  K    + 
Sbjct: 61  LNINYEQFIDFCILSG--CDYSAKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYSNTK- 117

Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                    R +RKL        +++ L+  IL +    +     
Sbjct: 118 ---------RFNRKL------SDVSMSLKDYILNEFTYEQARKIF 147


>gi|86355756|ref|YP_467648.1| RNAse D protein [Rhizobium etli CFN 42]
 gi|86279858|gb|ABC88921.1| RNAse D protein [Rhizobium etli CFN 42]
          Length = 208

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G+ +    T  +     +   + +S  D   D                      
Sbjct: 16  DAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADII-------------------- 55

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +    ++    L    E+    KI H  ++D  VL H +G++        + S +  +  
Sbjct: 56  RIAAGQKAAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTNPVFCTKIASRLCRTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     ++ K+++SS    +       E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKEMLDV---DVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARL 172

Query: 561 IVEK 564
           I + 
Sbjct: 173 IRDG 176


>gi|213404252|ref|XP_002172898.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
 gi|317376192|sp|B6JYI7|FEN1_SCHJY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|212000945|gb|EEB06605.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
          Length = 377

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 76/210 (36%), Gaps = 22/210 (10%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  GIP +     EA+   A         G      S D D M   +P    + T 
Sbjct: 143 KKLLELMGIPYVNAPC-EAEAQCAALAR----AGKVYAAASEDMDTMCFQAPILLRHLTF 197

Query: 159 KEEKIDI--EHVIKK----WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            E++ +   E+  +K         E+ V L  L G   D    I G+G   A  L++++G
Sbjct: 198 SEQRKEPISEYSFEKTIEGLNFTIEQFVDLCILLG--CDYCDPIRGVGPARAVELIRQHG 255

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL 272
           NL+N + +A + K     +   + A    L         +V     +E L     +   +
Sbjct: 256 NLDNFVKDADKKKFPIPEDWPYQDARRLFL-------EAEVQEAKDIE-LKWRAPDEQGI 307

Query: 273 ISFL-KALEFTKLINRVATTYDCDAANIEP 301
           I FL +   F +   RV       A+   P
Sbjct: 308 IKFLVEEKGFNEDRVRVGINRLVKASKTIP 337


>gi|33241189|ref|NP_876131.1| putative ribonuclease D [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238719|gb|AAQ00784.1| Ribonuclease D [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 214

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 28/220 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           K+  T    QW Q   T    +       +     +   + I   +Q +    K++    
Sbjct: 12  KVFETDLDDQWTQHFSTQSCLAIDTEAMGLIHGRDRLCLVQICD-EQDNVACIKIQQH-- 68

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
                            +   + L+   E+    K+ H  ++D   +     I++     
Sbjct: 69  -----------------QTKANNLQSLMEDSAIEKVFHYARFDVAAISCNLNIAVNSIFC 111

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENS 546
             L S +  +    H +  +  + +     E+ K  +SS    + ++++ Q+ E+A  + 
Sbjct: 112 TKLASKIGRTYSPRHGLKEVILELVGI---ELDKQAQSSDWGRVGELTEKQL-EYATNDV 167

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
             ++Q    L   LI E    + +R     I V+S+++I 
Sbjct: 168 RYLIQARNQLEKMLIREDRWELTKRC-FECISVMSELDIR 206


>gi|189236910|ref|XP_968888.2| PREDICTED: similar to DNA polymerase subunit gamma 1, mitochondrial
           [Tribolium castaneum]
          Length = 1093

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 93/300 (31%), Gaps = 76/300 (25%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +     +  T+T R         +      +G ++R    +PP   +I AD    EL I 
Sbjct: 710 IIPQVVVCGTLTRRAVEPTWMTASNARPDRVGSELRAMVQAPPGYNIIGADVDSQELWIA 769

Query: 759 AHI--AKITPLYQVF-----------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           + I  A    L+               +S D+H + A  +            R HAK IN
Sbjct: 770 SIIGDADRARLHGATPFGWMTLSGTKADSTDMHSVTAKAV---------GISRDHAKVIN 820

Query: 806 FSIIYGIS--------------------------PFRLATQLRIPRSEAADYIKRYFHRF 839
           ++ IYG                             F L    RI R +    ++ Y   +
Sbjct: 821 YARIYGAGQNFAERLLKQFNPSMSDGEAKTKAAKMFALTKGKRIYRLKKEFVLEYYDQNY 880

Query: 840 PGIHEY---------IEKTKNFVRQNGYVETIFGRRI---------HYDEINS------- 874
                +         I+      +  G  E+    R+             +N        
Sbjct: 881 SHWQAFEIAKTWNRRIDDMFERPKWVGGTESAMFNRLESIATSQEPRTPFLNGRLSRALE 940

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
           PK S  +      IN  +Q  AAD     ++ +   + +     +  L  HDE+ + VPE
Sbjct: 941 PKLSSDDRFLPTRINWVVQSGAADFLHLMLVCMRWIMGE---NARFCLSFHDEVRYLVPE 997


>gi|16082069|ref|NP_394495.1| flap endonuclease-1 [Thermoplasma acidophilum DSM 1728]
 gi|28380022|sp|Q9HJD4|FEN_THEAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|10640350|emb|CAC12164.1| DNA repair protein RAD2 related protein [Thermoplasma acidophilum]
          Length = 336

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 105/321 (32%), Gaps = 83/321 (25%)

Query: 10  VDGSSFIY------RAFYATPLLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFA 62
           +D  + +Y      R +   PL+     G   + + G F   +  L    R         
Sbjct: 26  IDTYNILYQLLSNVRQYDGMPLM--DSHGNVTSHLYGIFYRTINLLENRIRPVY------ 77

Query: 63  VIFDYPAV-------TFRNEIYPDYK------ANRPKIPEMLLPQLPLV----------- 98
            +FD           + R  +    K        R +  E L      +           
Sbjct: 78  -VFDGKPSPLKNRTISERQMMKEKAKAELEEAIERGE--EDLRQYYSRINYITPQIVDDT 134

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS--------- 149
           +      GIP ++       +  A+Y      +G    +IS D D +   +         
Sbjct: 135 KKLLDYMGIPYVDAP--SEGEAQASYMTKKNVDG----VISQDYDCLLFGARKILRNFAI 188

Query: 150 ------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
                 P   +Y TV  E I ++ V+    I  ++++ +  L G   D   GI GIG K 
Sbjct: 189 YGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVG--TDFNEGIKGIGAKK 246

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           A  L+++ G+++++L +       K  EN+ E  +             + P+        
Sbjct: 247 ALALIKKEGDIKSVLKHI-----GKNIENLDEIID----------FFKNPPVVDY--DFK 289

Query: 264 LEDCNGPRLISFL-KALEFTK 283
               +   +  FL    +F++
Sbjct: 290 FRKPDTDAIEHFLCDEHDFSR 310


>gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 854

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 73/209 (34%), Gaps = 31/209 (14%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                 +   S   I    ++Q  + KL+     +  +   +  ++      + IS  + 
Sbjct: 231 PQQPPSLEETSAIWISTPDELQAMLAKLKKATEIAVDLEHHSYRSYTGFLCLMQISDREN 290

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                                D        ++ +  L + F +   +K+ H  + D + L
Sbjct: 291 ---------------------DWIVDLLALRDEIEQLNEIFTDPKIVKVLHGAESDVVWL 329

Query: 477 HR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI-- 533
            + + + +    D    S +LD     H +A++ + +  Y        ++  +   +I  
Sbjct: 330 QQDFNVYIVNLFDTFHASKLLD--FPRHGLANLLEMYCDYIPD-----KRYQLADWRIRP 382

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
              ++ ++A  +++ +L ++  LR  L+ 
Sbjct: 383 LPQEMLDYARSDTHFLLFIYDNLRNALLD 411


>gi|309807998|ref|ZP_07701922.1| hypothetical protein HMPREF9211_0997 [Lactobacillus iners LactinV
          01V1-a]
 gi|308168756|gb|EFO70850.1| hypothetical protein HMPREF9211_0997 [Lactobacillus iners LactinV
          01V1-a]
          Length = 44

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 5  NHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNM 44
            L L+DG+S  +RAFYA        +  DGL  NAI  F NM
Sbjct: 2  KKLLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNM 44


>gi|294496492|ref|YP_003542985.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
 gi|292667491|gb|ADE37340.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
          Length = 339

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 110/348 (31%), Gaps = 83/348 (23%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKESIASHF 61
           +DG + +Y+       + R+ DG P         + ++G   +L+++             
Sbjct: 26  IDGYNTLYQ----FLSIIRQRDGTPLKDSRGNITSHLSG---ILYRMTNLFEAGIKP--- 75

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKI-------------------------PEMLLPQLP 96
             +FD     F+ +     K +R +                           + L+ +  
Sbjct: 76  VFVFDGKPPDFKADTISQRKKSREEALTKWDEAKEKGLSEDVYKYAQASSKVDALIVEDS 135

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
           +        GIP ++    E +   A      + +       S D D +   +P      
Sbjct: 136 M--QLLDYMGIPCVQAPS-EGEAQAAYMVNKGDAD----YSASQDYDSLLFGAPRVIRNL 188

Query: 157 TVKEEK---------------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
           T+  ++               ID+   IK   I   +++ +    G   D   G+  +G 
Sbjct: 189 TITGKRKLPGKNVYIDVEPESIDLMQNIKLLDIDRRQLIGIALCVG--TDYNKGLEKVGP 246

Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           KTA  L+++YG++  IL +   +         ++  + A++   L    TD         
Sbjct: 247 KTALKLIKQYGSIHKILEHRGEV---------IDELD-AKIDFFLNPPVTDAY------E 290

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
           L  +     +++ FL           +      + A  +     ++  
Sbjct: 291 LKWKSPQKEKIVDFLCKQHDFSEERVLKAVDRLEKAGKQQSQQTLDQW 338


>gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
 gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
          Length = 1195

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 123/337 (36%), Gaps = 50/337 (14%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              ++   +T +   + +++ V+KL      +  +   +   +      + IST      
Sbjct: 238 ARGLDETPFTWVETVRQLEELVEKLIHCQEIAIDLEHHSYRTYQGFTCLMQIST------ 291

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR- 478
                           S+D      L +  +  L + F N   +K+ H    D   L R 
Sbjct: 292 ---------------RSEDFLIDTLLLRSHIHMLNQVFTNPSIVKVLHGSDSDIKWLQRD 336

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           +G+ +    D    S +L+     +  AS+A     Y   +  K  + +    +    ++
Sbjct: 337 FGVYIVNMFDTGQASRILE-----YPSASLAFLLKFYCAIDANKKYQLADWRIRKLPEEM 391

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
            ++A E+++ +L ++  LR +LI +   ++            +  ++     +  LL+ +
Sbjct: 392 IKYAREDTHYLLYIYDRLRNELISKGNKNLGSSGTSTNTSTSTTTQLN----NHLLLEVL 447

Query: 599 SAEISKNLLSLEENIYDLSGE-----KFNLS-SPKQLG--DILFTKLKFPSGAKTKTGQW 650
                 +LL  E++I D +       K NL  SP QL    +L+   +  +  + ++ ++
Sbjct: 448 RRSRELSLLRYEKDILDDNSHINFAKKLNLQYSPTQLNVLKVLYHWREGLARDEDESVRY 507

Query: 651 KTTAQDLE-----------QINCGDNPIIKNILEWRQ 676
               Q +            ++    +PI  +I +   
Sbjct: 508 ILPNQMMLTIVERQPTSVQELLTLCSPIPPSIKQHSH 544


>gi|17570818|ref|NP_523327.1| exonuclease [Enterobacteria phage T3]
 gi|119705|sp|P20321|EXRN_BPT3 RecName: Full=Exodeoxyribonuclease; Short=Exonuclease
 gi|15709|emb|CAA35147.1| 6 [Enterobacteria phage T3]
 gi|17384302|emb|CAC86290.1| exonuclease [Enterobacteria phage T3]
          Length = 302

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 52/159 (32%), Gaps = 12/159 (7%)

Query: 47  KLLQNSRKESIASHFAVIFDYPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAF 105
           K  +  +K  + +   + F   +V +R E+  P+YKANR    + +      +    +  
Sbjct: 66  KSYETRKKAWVGAPIVLAF-TDSVNWRKELVDPNYKANRKATKKPVGY-FEFLEALFERE 123

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKEEKID 164
               I     E DD++          G     IIS DKD   +  P            + 
Sbjct: 124 EFYCIREPMLEGDDVMGVIASNPSAFGARKAVIISCDKDFKTI--PNCDFLWCTTGNILT 181

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
                  W          Q + GD  D   GIPG G   
Sbjct: 182 QTKETADW------WHLFQTIKGDMTDGYSGIPGWGDTA 214


>gi|254466427|ref|ZP_05079838.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
 gi|206687335|gb|EDZ47817.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
          Length = 204

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 72/213 (33%), Gaps = 25/213 (11%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 L+     +    T  ++    +   I +S  D                + H  Q
Sbjct: 8   NDLPDGLDLGPVVAIDCETMGLNPHRDRLCVIQMSGGDG---------------NAHIVQ 52

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVL 496
              G+          L +  E+ + LK+ H  ++D   + H +G          + S ++
Sbjct: 53  VEKGQTEAPN-----LCRMLEDPNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H + ++ Q+ L     +I K ++ S    +       ++A  +   + +L   L
Sbjct: 108 RTYTDRHGLKNLTQELLGI---DISKQQQMSDWGAEELTEAQLDYAASDVLHLHKLREAL 164

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +L  E    + +      + + +++++ G  
Sbjct: 165 DKRLAREGRSEMAQAC-FDFLPMRAKLDLAGWP 196


>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 388

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 28/204 (13%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           N  Y  +   + +Q  +  L    S S    +     + SK   I IS   +        
Sbjct: 4   NSDYIVVDTIRSLQLVLITLSQADSISIDTESSGYYTYFSKVCLIQISAKGK-------- 55

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM 483
             I   L +                L  L   FE++  LKI H+   D   L + +G   
Sbjct: 56  NYIIDPLKLQN--------------LDGLGNLFEDKKILKIFHSAIDDIKALKKDFGFKF 101

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
               D    S +LD     + +  +   +    + ++ K  + S    +  +    ++A 
Sbjct: 102 HNIADTGFSSRLLD--HEQYSLTYLVDYY---HKIKLSKKEQKSNWEKRPLEKSQLQYAA 156

Query: 544 ENSNVILQLWLLLRPKLIVEKLLH 567
            ++  +  +W  ++ +L    L  
Sbjct: 157 LDTVYLETIWEKMKEELTKRNLYE 180


>gi|68076257|ref|XP_680048.1| endonuclease [Plasmodium berghei strain ANKA]
 gi|56500919|emb|CAI05790.1| endonuclease, putative [Plasmodium berghei]
          Length = 390

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 20/143 (13%)

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            ++S D D +   +P    + T K+++  I+ + ++ +  I  E+ +    L+G   D  
Sbjct: 262 IVVSDDTDALAFGAPNLIRFITNKKKRHIINKDEILNELNINYEQFIDFCILSG--CDYS 319

Query: 194 PGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
             IPGIG   A  ++++Y  +E  L +++  K    +          R +RKL       
Sbjct: 320 AKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYSNTK----------RFNRKL------S 363

Query: 254 PITIPLEHLILEDCNGPRLISFL 276
            +++ L+  IL +    +     
Sbjct: 364 DVSMSLKDYILNEFTYEQARKIF 386


>gi|212671407|ref|YP_002308406.1| exonuclease [Kluyvera phage Kvp1]
 gi|211997251|gb|ACJ14568.1| exonuclease [Kluyvera phage Kvp1]
          Length = 304

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 24/245 (9%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPV-NAIAG-FCNMLWKLLQNS---RKES 56
           + +  + ++DG   +++A  A+ + +   D         G   N+L   +++    +K  
Sbjct: 16  KSDKGVLVMDGDWLVFQAMAASEVETDWGDDCWTLECDHGKAWNILVDSVKSYASRKKAW 75

Query: 57  IASHFAVIFDYPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115
             +   + F   +V +R E+  P YK NR    + +      V          +I     
Sbjct: 76  RDAPIVLAF-TDSVNWRKELVDPTYKENRKASRKPVGY-RAFVERVQACEDWTSILEDRL 133

Query: 116 EADDIIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
           E DD++      A+  GF    ++S DKD    +     L+ T     +  +     +  
Sbjct: 134 EGDDVMGIIGSGAKHFGFKKAVLVSCDKDFKT-IPDCDFLWCTTGN-ILTQDRTTADY-- 189

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI--KQKKRREN 232
                   Q + GD  D   GIPG G  TA  L   Y           +      ++ + 
Sbjct: 190 ----WHIYQTIKGDLTDGYGGIPGWGETTAEWLENPY-----AFEQVEKTFKSGARKGQT 240

Query: 233 ILEYA 237
           +LE+ 
Sbjct: 241 VLEWK 245


>gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
 gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
          Length = 203

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 63/200 (31%), Gaps = 24/200 (12%)

Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDL 431
            N          L+     +    T  +     +   + +S+ D                
Sbjct: 2   TNHLHSHDLPDGLDLGPVVAIDTETMGLVPARDRLCVVQLSSGDGD-------------- 47

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIM 490
             H  Q + G+          L +   +   LK+ H  ++D   L   +G+         
Sbjct: 48  -AHMVQIAQGQTEAPN-----LTRMLTDPKVLKLFHYARFDVAALENAFGVRTAPIYCTK 101

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           + S ++ +    H + ++  + L     ++ K+++SS        +   ++A  +   + 
Sbjct: 102 IASKLVRTYTDRHGLKALLSEVLGV---DVSKAQQSSDWGAPTLSAAQLDYAASDVLYLH 158

Query: 551 QLWLLLRPKLIVEKLLHVYE 570
           +L   L   L  E    + +
Sbjct: 159 RLKEALDGMLAREGRTELAQ 178


>gi|255637101|gb|ACU18882.1| unknown [Glycine max]
          Length = 278

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 62/178 (34%), Gaps = 15/178 (8%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + I    +  D   K     + L+   +          +E++   K   E+ +  K+ H+
Sbjct: 59  LVIGFDCEGVDLCRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHD 118

Query: 469 IKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDI--ASIAQKWL----SYTRKEIL 521
            K D   L+ ++GI +    D  +   +++       +    I+   L     Y  K   
Sbjct: 119 CKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGKSYD 178

Query: 522 KSRKSSIPIDKIS--------DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +  +  + + +            Q+   A ++   +L ++  +  KL    L ++  R
Sbjct: 179 EKEEVRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQMMEKLNERSLWYLAVR 236


>gi|159475852|ref|XP_001696028.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
 gi|158275199|gb|EDP00977.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
          Length = 498

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS---HD 504
           IL+  K+FFE+    K+ HN  +D+ VL   GI+  GF  D + M+ + D+ RS    + 
Sbjct: 230 ILAEFKRFFEHAGVKKVWHNYGFDRHVLENMGIAAAGFGGDTLHMARLADASRSGKKTYG 289

Query: 505 IASI 508
           + S+
Sbjct: 290 LDSL 293


>gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
 gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
          Length = 469

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 74/219 (33%), Gaps = 35/219 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI-------STLDQKDDTSFK 423
           +++T+  +   +KL  +    F   T  +     + + I             ++  T   
Sbjct: 259 LLDTEHAELDSRKLSNLSYVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQFGTLVD 318

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF--FENEHFLKIGHNIKYDKLVLHRY-- 479
             T     S      S        +I    + F  F ++  + + HN  +D   L R+  
Sbjct: 319 PGTPIPAASTKVHGISDAMVQGAPDIGQAARAFHRFASDAVI-VAHNAPFDMAFLRRHAK 377

Query: 480 --GISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G+S  +   D +L+S VL     SH + ++ ++                    +++  
Sbjct: 378 RAGVSWDQPVLDTVLLSAVLFGASQSHTLDALCERL-------------------EVTIP 418

Query: 537 QVQEH-AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
               H A+ ++    +++  + P L    L      L++
Sbjct: 419 PALRHTAMGDAQATAEVFCKMLPMLEARGLGTFGAVLEE 457


>gi|153000417|ref|YP_001366098.1| ribonuclease D [Shewanella baltica OS185]
 gi|160875014|ref|YP_001554330.1| ribonuclease D [Shewanella baltica OS195]
 gi|217973594|ref|YP_002358345.1| ribonuclease D [Shewanella baltica OS223]
 gi|151365035|gb|ABS08035.1| ribonuclease D [Shewanella baltica OS185]
 gi|160860536|gb|ABX49070.1| ribonuclease D [Shewanella baltica OS195]
 gi|217498729|gb|ACK46922.1| ribonuclease D [Shewanella baltica OS223]
 gi|315267246|gb|ADT94099.1| ribonuclease D [Shewanella baltica OS678]
          Length = 369

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 70/233 (30%), Gaps = 33/233 (14%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            ++  + +   +   V + +                +++K   I             K  
Sbjct: 2   SAFQYVSDEASLNALVAQYKQSKILVLDTEFVRTRTYYAKLGLI--------QAYDGKTL 53

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMR 484
            +   +++                L+       + + +K+ H+   D  V   YG     
Sbjct: 54  ALIDPVALPD--------------LAQFWALLSDPNIIKLVHSCSEDLEVFAHYGKCQPT 99

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D  + + +   G      A + +  L    + I K    +  I +        +A  
Sbjct: 100 PLFDSQIAASLCGMGHGV-GYAKLVETCLG---EVIDKGESRTDWIRRPLTEAQLSYAAN 155

Query: 545 NSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   + QL+  L  KL  +  L  +YE  ++     ++  +     +D   LK
Sbjct: 156 DVLYLYQLYPQLEAKLSAQGRLAWLYEEGERMTQGRLADPD-----LDTAYLK 203


>gi|291227793|ref|XP_002733868.1| PREDICTED: DNA-directed DNA polymerase gamma-like [Saccoglossus
            kowalevskii]
          Length = 1315

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 65/204 (31%), Gaps = 32/204 (15%)

Query: 672  LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731
            LE  +L K  + + +      +     +      A T+T R+        +      +G 
Sbjct: 877  LERSELPKTVTRHVEY---DEDNNYGAILPKVVTAGTVTRRMVEPTWLTASNARPDRVGS 933

Query: 732  KIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITPLYQVFENSL--------DIH 778
            +++    +PP    + AD    EL I      A  A           +L        D+H
Sbjct: 934  ELKAMVQAPPGYHFVGADVDSQELWIASLLGDARFAGFHGCTAFGWMNLQGNKLERTDLH 993

Query: 779  RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR----LATQLRIPRSEAADYIK 833
               A  I            R  AK  N+  IYG   PF     +    R+   EA     
Sbjct: 994  SKTADTI---------DISRDQAKVFNYGRIYGAGQPFAVRLLMQFNHRMSVDEARRKAS 1044

Query: 834  RYFHRFPGIHEY--IEKTKNFVRQ 855
              +    GI +Y   E  +  VR+
Sbjct: 1045 TMYSATKGIKKYKLKEDVREIVRK 1068


>gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K]
 gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 1446

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 85/223 (38%), Gaps = 30/223 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVETIF-IDLSVHTSQDSTG 441
           LE+     F + T  + A +   I +A +   D +   SF         LS  T+Q ++ 
Sbjct: 420 LESAEYVIFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSAFTTQLTSI 479

Query: 442 KNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFEDI 489
            N +        E+L+  K+F  +   +  GHN+ +D   L+    R  I +      D 
Sbjct: 480 TNEMVHGAKKEAEVLAMFKEFTGDA--VLAGHNVSFDMGFLNAGYERNDIDLIDNPVIDT 537

Query: 490 MLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           + +S +L     +H + S+ +++   L +  +    +  +   + K+     + + + N 
Sbjct: 538 LELSRMLHPEYKNHKLDSLTKRYKINLEHHHRANADAESTGYLLYKLEKEAAENYDMVNV 597

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           N           +L     +  + +  +P   V+      G++
Sbjct: 598 N-----------QLNDRVGVGEFYKQARPAHAVLMAQTQAGLK 629


>gi|219850742|ref|YP_002465174.1| flap endonuclease-1 [Methanosphaerula palustris E1-9c]
 gi|254788674|sp|B8GIA0|FEN_METPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|219545001|gb|ACL15451.1| XPG I domain protein [Methanosphaerula palustris E1-9c]
          Length = 333

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 101/343 (29%), Gaps = 90/343 (26%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +DG++    A Y    + R+ DG P         + ++G F   L  L +  R       
Sbjct: 27  IDGNN----ALYQFLSIIRQPDGTPLMNSEGRITSHLSGVFFRTLRFLEKGIRPVY---- 78

Query: 61  FAVIFDYPAV-------------------TF-----RNEIYPDYKANRPK---IPEMLLP 93
              IFD                        +     R +    YK  R      PE++  
Sbjct: 79  ---IFDGKPPALKQETIESRREVRREAGVQWEAALARGDQEEAYKQARASSRVTPEIIAT 135

Query: 94  QLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
                +      G+P ++    E +   A+        G     +S D D +   +P   
Sbjct: 136 S----KELLTLMGVPCVQAPS-EGEAQAASMA----ASGAVTYAVSQDYDSLLFGAPLLV 186

Query: 154 LYDTVKEEK-------------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIG 200
              TV  ++             I ++ V+   GI  E+++    L G   D  PGI G+G
Sbjct: 187 RNLTVSSKRRVQGRTIAVQPESIRLDEVLGGLGITREQLIEAGILIG--TDFNPGIRGVG 244

Query: 201 YKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260
            KTA  ++++ G  + I             +        A LS                 
Sbjct: 245 PKTALKIVKKDGFADMIAEKLPDFDPSPILQFFRSPPVIANLS----------------- 287

Query: 261 HLILEDCNGPRLISFL-KALEFTKLINRVATTYDCDAANIEPV 302
            L  +  +   +   L     F     R A          + +
Sbjct: 288 -LDWQPPDQAGIEDLLCGEYGFATERVRTALQKISGPPGQKTL 329


>gi|83944937|ref|ZP_00957303.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633]
 gi|83851719|gb|EAP89574.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633]
          Length = 204

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 55/190 (28%), Gaps = 24/190 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L+     +    T  +         + +S  D +              +   
Sbjct: 6   HRGDLPDGLDLGKRVAIDTETQGLSLVRDGLCLVQLSAGDGE--------------AHIV 51

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
             D    +         LK    +    K+ H  ++D  ++ R  G++M       + S 
Sbjct: 52  QPDRATYDCPN------LKALLADTGVEKLLHFARFDLAIIERDLGVTMTPVFCTKIASK 105

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +    H +  + ++       E+ K ++SS    +        +A  +   +  +  
Sbjct: 106 LVRTYTDRHGLKDVCREIAGV---ELSKQQQSSDWAAQDLSEAQLNYAASDVLYLHAIAD 162

Query: 555 LLRPKLIVEK 564
            L   L  E 
Sbjct: 163 GLTAMLEREG 172


>gi|296815198|ref|XP_002847936.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
           113480]
 gi|238840961|gb|EEQ30623.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
           113480]
          Length = 810

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 93/268 (34%), Gaps = 33/268 (12%)

Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN-------SEQTPQKLFLERL 355
           V +++        ++++      ++ S   SLSD T   +        E T      E+ 
Sbjct: 174 VNNLDDGSAFKPLLKSKPHALVPLEESLGGSLSDPTKPYHHPYEKEIGESTYPASVYEKR 233

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +     P+ N   T +   +D+   + +L+     +  +                     
Sbjct: 234 EPQMYQPVENTKATFVETMEDVHAMLAELKKAKEIAVDLE-------------------- 273

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             D   +      + +S              ++ L  L + F +   +K+ H    D + 
Sbjct: 274 HHDAHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIVKVLHGSSMDVIW 333

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R  G+ + G  D    + +L        +  + Q+++ +   +  K  +++    +  
Sbjct: 334 LQRDLGLYLVGLFDTFHAASMLQ--LPKKSLKFLLQQYVGF---DADKQYQTADWRIRPL 388

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIV 562
              + ++A  +++ +L ++  LR +LI 
Sbjct: 389 LPGMLDYARSDTHFLLYIFDRLRNELIE 416


>gi|269986761|gb|EEZ93040.1| XPG I domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 332

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 102/325 (31%), Gaps = 80/325 (24%)

Query: 5   NHLFLVDGSSFIYRAFY------ATPLLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESI 57
             L  +D  ++I++  +      A         G     + G F   +  L    +    
Sbjct: 21  GKLIAIDAFNWIFQ--FLTTIRLADGSYLTDSKGKVTTHLNGLFYRSVSMLENRIKP--- 75

Query: 58  ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM--------------------LLPQLPL 97
                 +FD  A  F+ E   +    R K  E                     L      
Sbjct: 76  ----VFVFDGAAPKFKKETLKE----REKTKEEAIEKMQNASTAEEKAMYMRRLSRIDDY 127

Query: 98  V----RLATQAFGIPAIEIQGFEADDIIATYTYI-----AEKEGFAVTIISTDKDLMQLV 148
           +    +      GIP ++    E +   A          A  + +   +    K +  L 
Sbjct: 128 IIDSSKELLSYLGIPYVQAPA-EGEAQAAQLNMQGKVFAAASQDYDTLLFGAKKVVRNL- 185

Query: 149 SPTTCLYDTVKEEKIDIEHVIK---------KWGIPPEKMVCLQALTGDSIDNIPGIPGI 199
                    +  + I    + +         + GI  E+++ L    G   D   G+ GI
Sbjct: 186 --NITNKRKISGKGITTSVLPELINANPNLARLGITREQLITLSLFVG--TDYNKGVDGI 241

Query: 200 GYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL 259
           G K A  +++E  + E I  +         +E I +Y     +S K++ +          
Sbjct: 242 GPKKALKIVKE-KSREEIFASYDFRSDYSIKE-IYDY----FISPKIIEVN--------- 286

Query: 260 EHLILEDCNGPRLISFL-KALEFTK 283
           E L  +  N  +L+SFL +  +F+K
Sbjct: 287 EDLNPKKLNKEKLVSFLCEEHDFSK 311


>gi|126653087|ref|XP_001388383.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
 gi|317374887|sp|A3FPN7|FEN1_CRYPV RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|126117476|gb|EAZ51576.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
          Length = 490

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 87/263 (33%), Gaps = 58/263 (22%)

Query: 10  VDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           +D S +IY+   A    S         G   + I G  +   +LL+   K         +
Sbjct: 33  IDASMWIYQFLAAIREGSQWGNLTNSSGESTSHINGMLSRTTRLLEAGIKP------VFV 86

Query: 65  FDYPAV-------TFRNEIYPDY----------------KANRPKIPEMLLPQLPLVRLA 101
           FD           T R+E                     K    +   +   Q+  V+  
Sbjct: 87  FDGAPPEMKKDELTKRDERREKALAELEKAQEIGDEELIKKQSVRTIHVTKKQVEDVKKL 146

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE- 160
               G+P I+    EA+   A        +G    +++ D D +   +P         E 
Sbjct: 147 LGFLGMPCIDAPS-EAEAQCAELCK----DGLVYGVVTEDADSLTFGTPIQIKQLNFSES 201

Query: 161 --EKIDIEHVIKKWG--------------IPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
             +  D     +K G              I  ++ + L  L+G   D    I GIG  TA
Sbjct: 202 SNKITDKSPSKQKNGMQIIKLSLILSELDINMDQFIDLCILSG--CDYCGTIRGIGTSTA 259

Query: 205 ALLLQEYGNLENILINASRIKQK 227
             LL++Y N+E+IL N  + K  
Sbjct: 260 YKLLKKYHNIESILKNIDQTKNP 282


>gi|67538092|ref|XP_662820.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
 gi|40743207|gb|EAA62397.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
 gi|259484675|tpe|CBF81100.1| TPA: single-stranded DNA endonuclease (Eurofung) [Aspergillus
            nidulans FGSC A4]
          Length = 1141

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 98/305 (32%), Gaps = 34/305 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    II+ 
Sbjct: 795  KKDRRDADEVTQIMITECQQLLRLFGLPYITAP-MEAEAQCAELVSLGLVDG----IITD 849

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
            D D+  L   T    +   + K         + K++ +   K++    L G   D   GI
Sbjct: 850  DSDIF-LFGGTRVYKNMFNQSKYVECYLTADLEKEYALHRRKLISFAHLLG--SDYTEGI 906

Query: 197  PGIGYKTAALLLQEYGNLENILINASRIKQK---------KRRENILEYAETARLSRKLV 247
            PGIG  TA  +L E+ +LE      ++++              +   + A    L     
Sbjct: 907  PGIGPVTALEILTEFSSLEEFRDWWTQVQTGADMSNSSHAAFYKKFRKQATKIFLPPTFP 966

Query: 248  MLRTDV-----PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
              R D                    +   L +F        L+  +  + +     + PV
Sbjct: 967  DARVDAAYLEPEADRDPSPFQWGVPDLHGLRNF--------LMATIGWSQERTDEVLVPV 1018

Query: 303  VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
            + DIN  E +G                 F+       +   E+   +L  E         
Sbjct: 1019 IRDINQREQEGTQSNITSFFSGPQGAGAFAPRVRSGGQSRMEKAFSRLRREAGADQDAEL 1078

Query: 363  INNDS 367
            ++ ++
Sbjct: 1079 VDVET 1083


>gi|115948726|ref|XP_001193541.1| PREDICTED: similar to exosome component 10, partial
           [Strongylocentrotus purpuratus]
          Length = 776

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 76/220 (34%), Gaps = 27/220 (12%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P    LE +   S  P+    +T +     +++  + L+     +  +   +  ++   
Sbjct: 96  EPLPSQLEPVDNPSYTPLEATPFTLVDTVSKLEELSRSLKQSKEIAVDLEHHSYRSYLGF 155

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + IST +                      D        +  L  L   F +   +K+
Sbjct: 156 TCLMQISTAEH---------------------DYVVDTLELRSELQMLNDAFTDPKIVKV 194

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D   L R  G+ +    D    S  L  G   H +AS+  ++    + E  K  
Sbjct: 195 FHGANMDFDWLQRDLGLYVVNMFDTHQASRSL--GFPHHSLASLLSRY---CQVEADKQY 249

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           + +    +    ++  +A E+++ +L ++  ++ +LI   
Sbjct: 250 QLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRG 289


>gi|269958513|ref|YP_003328300.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
 gi|269848342|gb|ACZ48986.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
          Length = 204

 Score = 59.7 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 27/218 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L+     +    T  +     +   + +S+ D                 V  
Sbjct: 6   HNNDLPDGLDLGNVVAVDTETMGLVCRRDRVCLVQLSSGDGDAHL------------VKF 53

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY 494
           S D +  N         L++   N   +KI H  ++D   + H +G+         + S 
Sbjct: 54  SGDYSAPN---------LRRIVSNPDIMKIFHFARFDVAAIRHCFGMWATPCYCTKIASR 104

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +  + H +  +  + L      I K+++SS    ++  S+   +A  +   +  +  
Sbjct: 105 LVRTYTNHHGLKDLCYELLGVK---INKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKK 161

Query: 555 LLRPKLIVEKLLHVYERLDK--PMIDVVSQMEITGIQI 590
            L   L  E    + E   K  P    +  +   G+ I
Sbjct: 162 KLDMMLEREDKQDLAESCFKFIPARAELDLLGWDGVDI 199


>gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori]
 gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori]
 gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori]
          Length = 451

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 30/221 (13%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             +T I     + + V+ L  +   +  +   +        + + I+ L Q         
Sbjct: 117 TKFTYIDIESKLDELVEHLMAVEQIAVDVEHHSYRDLSGLYLILGITCLIQ--------- 167

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                +S     D        +E +  L   F +   LK+ H    D L L R +G+ + 
Sbjct: 168 -----ISTDEGGDFIIDALAVREHIHKLNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLV 222

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           G  D    +  L        + +++ K+L   Y   +  K+ + +    +     + ++A
Sbjct: 223 GLFDTYHAAKSL-------GLPALSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYA 275

Query: 543 IENSNVILQLWLLLRPKLIVEK------LLHVYERLDKPMI 577
             +++ +L +W +++ ++I +       LL V+E   +   
Sbjct: 276 RMDTHYLLYVWRVMKNQIIEKNAGQTNMLLSVFEDSRQTCA 316


>gi|85375259|ref|YP_459321.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594]
 gi|84788342|gb|ABC64524.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594]
          Length = 206

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 26/206 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L      +    T  +     +   + IS  D  +D          D +           
Sbjct: 15  LAGDAPLAVDTETMGLVTRRDRLCIVQIS--DGGEDEHLVRFAPDSDYAAPN-------- 64

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSS 502
                    LK    + + +K+ H  ++D   +  Y G++        + S +  +    
Sbjct: 65  ---------LKALLADTNRVKLYHFARFDLAAIEHYLGVTAAPVFCTKIASKLTRTYTDR 115

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLI 561
           H + ++ ++ L     E L  ++ S        ++ Q ++A  +   + ++  +L  +L 
Sbjct: 116 HGLKNLVEELLG----ENLSKQQQSSDWGGADINEAQRDYAASDVRYLHRMREILITRLE 171

Query: 562 VEKLLHVYERLDKPMIDVVSQMEITG 587
            E    + +      +   +++++ G
Sbjct: 172 REGRTEMAQAC-FDFLPTRARLDLAG 196


>gi|327409739|ref|YP_004347159.1| putative Flap endonuclease [Lausannevirus]
 gi|326784913|gb|AEA07047.1| putative Flap endonuclease [Lausannevirus]
          Length = 363

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 34/194 (17%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+      G+  +  +G E D ++A Y    +  G    + S D D     +P       
Sbjct: 172 VKNLLDVLGVRYVTAEG-EGDGVLAAYAVHGKIFG----VSSADTDCHAYGAPFAIPEID 226

Query: 158 VKEEKIDI---EHVIKKWGIPPEKMVCLQALTG---------DSIDNIPGIPGIGYKTAA 205
           V  EK+ +   E  ++  G+  E+ + L  L G         ++        GIG KTA 
Sbjct: 227 VVGEKLTLVHREQYLEDLGLTKEQFLDLCILCGCDYNDRASFEAKTAGKRPRGIGCKTAL 286

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
            L++E+G++E I                LE    A L+ +    R    I   +E ++  
Sbjct: 287 KLIKEHGSIEKIGE--------------LEGINIAPLNYE--RCRELFRIPDKIEDIVPG 330

Query: 266 -DCNGPRLISFLKA 278
                  L  FL+ 
Sbjct: 331 SRPQKDSLELFLQE 344


>gi|300711017|ref|YP_003736831.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
 gi|299124700|gb|ADJ15039.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
          Length = 325

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           R   +   +P +E    E +   A   ++A+         + D D +   +P T    T 
Sbjct: 138 RELLELLDVPIVEAP-TEGE---AQAAHMAKSADVD-YAGTEDYDALLFGAPLTLRQLTS 192

Query: 159 KE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
           K   E +D+   +    +  E++V +  L G   D   G+ G+G KTA   + E+G+L  
Sbjct: 193 KGDPECMDLAATLAAHELTHEQLVDVGILCG--TDFNEGVHGMGPKTAVKAIHEHGDLAG 250

Query: 217 ILINASRI 224
           +L     +
Sbjct: 251 VLDARDAV 258


>gi|304411369|ref|ZP_07392983.1| ribonuclease D [Shewanella baltica OS183]
 gi|307305309|ref|ZP_07585057.1| ribonuclease D [Shewanella baltica BA175]
 gi|304350224|gb|EFM14628.1| ribonuclease D [Shewanella baltica OS183]
 gi|306911612|gb|EFN42037.1| ribonuclease D [Shewanella baltica BA175]
          Length = 369

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 71/233 (30%), Gaps = 33/233 (14%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
            ++  + +   +   V + +                +++K   I             K  
Sbjct: 2   SAFQYVSDEASLNALVAQYKQSKILVLDTEFVRTRTYYAKLGLI--------QAYDGKTL 53

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMR 484
            +   +++                L+       + + +K+ H+   D  V   YG     
Sbjct: 54  ALIDPVALPD--------------LAQFWALLSDPNIIKLVHSCSEDLEVFAHYGKCQPT 99

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D  + + +   G      A + +  L    + I K    +  I +        +A  
Sbjct: 100 PLFDSQIAASLCGMGHGV-GYAKLVETCLG---EVIDKGESRTDWIRRPLTEAQLSYAAN 155

Query: 545 NSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
           +   + QL+  L  KL V+  L  +YE  ++     ++  +     +D   LK
Sbjct: 156 DVLYLYQLYPQLEAKLSVQGRLAWLYEEGERMTQGRLADPD-----LDTAYLK 203


>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
 gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
          Length = 552

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 82/235 (34%), Gaps = 37/235 (15%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P    L+  ++     + +  +T +   + ++   QKL      +  +   +  +F   
Sbjct: 228 EPPATQLKEAKEQLYDSLEDTPFTLVETVEQLESLSQKLMEAQEFAVDLEHHSYRSFLGF 287

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + IST D                      D        +  L  L + F N + LK+
Sbjct: 288 VCLMQISTRDH---------------------DFLVDTLELRNDLHLLNESFTNPNILKV 326

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D   L R +GI +    D    S VL        +A + +K+       +   +
Sbjct: 327 FHGADMDVGWLQRDFGIYVVNMFDTGQASRVL--ALERFSLAFLLKKFCG-----VTADK 379

Query: 525 KSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYER 571
           +  +   +I     ++  +A E+++ +L +   LR +LI         LL VY R
Sbjct: 380 QYQLADWRIRPLPEEMIRYAREDTHYLLYIHDRLRNELIRTGNENNNLLLSVYSR 434


>gi|41614884|ref|NP_963382.1| flap endonuclease-1 [Nanoarchaeum equitans Kin4-M]
 gi|48427872|sp|P61942|FEN_NANEQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|40068608|gb|AAR38943.1| NEQ088 [Nanoarchaeum equitans Kin4-M]
          Length = 339

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 42/250 (16%)

Query: 5   NHLFLVDGSSFIYRAFYATPLL---SRKHDGLPVNAIAG-FCNMLWKLLQNSRK----ES 56
             +  +D  + +Y+  ++        R   G   + ++G F   +  L    +     + 
Sbjct: 23  GKVIAIDAFNALYQFLFSIRQDGEPLRDSKGRITSHLSGLFYRTINLLEYGIKPIYVFDG 82

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPK--IPEMLLPQLPL----------VRLATQA 104
               F ++        + ++   YK    K  I E +     L           +   +A
Sbjct: 83  TPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEAIKYAKSLGKLDSYMVEEAKKLLEA 142

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT------- 157
            GIP ++    E +   A  T     +       S D D +   SP      T       
Sbjct: 143 MGIPYVQAPS-EGEAEAAYLTKKGVSD----YCGSQDYDSLLFGSPRVVRNITISEKRKL 197

Query: 158 --------VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                   VK E I++E V+  W I  E+++ +  L G   D    +PGIG KTA  +++
Sbjct: 198 PGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLLG--TDYNEKVPGIGPKTAIEIVK 255

Query: 210 EYGNLENILI 219
            +G+   ++ 
Sbjct: 256 RFGDPIKVIE 265


>gi|304379977|ref|ZP_07362706.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|14021052|dbj|BAB47676.1| hypothetical protein [Staphylococcus aureus]
 gi|27529902|dbj|BAC53839.1| hypothetical protein [Staphylococcus aureus]
 gi|166197579|dbj|BAG06188.1| hypothetical protein [Staphylococcus aureus]
 gi|205825351|dbj|BAG71442.1| hypothetical protein [Staphylococcus aureus]
 gi|221148468|gb|ACL99829.1| hypothetical protein [Staphylococcus pseudintermedius]
 gi|238768493|dbj|BAH66805.1| hypothetical protein [Staphylococcus aureus]
 gi|269939553|emb|CBI47912.1| hypothetical protein SATW20_00300 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|283469258|emb|CAQ48469.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|288551798|gb|ADC53394.1| hypothetical protein [Staphylococcus aureus]
 gi|288964699|gb|ADC79456.1| hypothetical protein [Staphylococcus aureus]
 gi|304341557|gb|EFM07467.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|329315338|gb|AEB89751.1| hypothetical protein SAT0131_02880 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 366

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 103/274 (37%), Gaps = 34/274 (12%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
            ++ K+      +L       T R++T  SL  T T R+ +   NLQ +P        ++
Sbjct: 103 DKIEKLFDRLEQAL-----NGTNRLYTQLSLIGTRTHRITTKNFNLQGLPK------AVQ 151

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
              +    KK+ + D+   E  + A++ + + L  +      ++  + +E+       +S
Sbjct: 152 HTILPSKFKKVYTVDFKSFEPSVAAYMTQDSKLIDLLNQKDGLYDALLSEL------GLS 205

Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854
            ++R   K            F                + +Y        ++++    F +
Sbjct: 206 DELRVFVKRAFIGSFLFGGNF----------KNPKFKLNQYVSE----VQWLDAVSQFTK 251

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
               ++    +        S +  +      + +   +Q  A+ I +  ++ V+K+  D 
Sbjct: 252 V-IELKKHVEKSNSMPMPYSIEHDMSAFQGSSIMAIYVQTVASYIFKHILLKVYKAQCDQ 310

Query: 915 KLATKMLLQIHDELVFEVPEEEITT-ASQIIVHS 947
           K   K+++ IHD ++ E  +EEI     Q++  +
Sbjct: 311 K-TFKIIVPIHDAIMIECEDEEIAQNVGQLMKDT 343


>gi|307184738|gb|EFN71060.1| DNA polymerase subunit gamma-1, mitochondrial [Camponotus floridanus]
          Length = 1254

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 99/344 (28%), Gaps = 96/344 (27%)

Query: 657  LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
               I   D+ +  +I   ++  +    Y   +P  +   T           T +      
Sbjct: 823  QLVIWLDDHSLPGSIKRIKKHMR----YGAIIPQVVVSGTLTRRAVEPTWMTAS------ 872

Query: 717  EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL-----AHIAKITP----- 766
              N     I ++L   +     +PP   ++ AD    EL I      AH   I       
Sbjct: 873  --NAHIERIGSELRCMV----QAPPGYNIVGADVDSQELWIASIIGDAHYKSIHGATPFG 926

Query: 767  ---LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQ 820
               L     N  D+H + A  I            R HAK IN++ IYG       RL  Q
Sbjct: 927  WMTLIGTKSNGTDMHSVTAKAI---------GISRDHAKVINYARIYGAGQKFAERLLKQ 977

Query: 821  LRIPRSEA----------------------ADYIKR------Y--FHRFPGIH------- 843
                 ++A                      A++I        Y  +  +           
Sbjct: 978  FNPSMTDAEATSKSRKMFALTKGKKVFRLKAEFINNDLEDKLYTSYQAYQMAKLHGKTLQ 1037

Query: 844  ------EYIE--------KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889
                  E+++        + +        V T F        +    +   +      IN
Sbjct: 1038 DMFQKSEWMDGSESAMFNRLEEIAGSKHPV-TPFLNARLSRALEITDTDDDDKFLPTKIN 1096

Query: 890  APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
              +Q  A D     ++ +   + D     +  L  HDE+ + VP
Sbjct: 1097 WVVQSGAVDFLHLMLVCMRWLMRD---NARFCLSFHDEVRYLVP 1137


>gi|300867874|ref|ZP_07112515.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
 gi|300334110|emb|CBN57691.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
          Length = 210

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 70/213 (32%), Gaps = 25/213 (11%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +       +    T  + +    T  +  +  +   + +   +               
Sbjct: 6   VCDRDLPDTLLSHYLTAEAIAADTETMGLLPWRDRLCLVQLCDAEGI------------- 52

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
             V   + + G+          LKK  E  + +KI H  ++D   L     I +      
Sbjct: 53  --VTVVRIAKGQREAPN-----LKKLMEASNIVKIFHFARFDMATLKYHLDIHVAPVFCS 105

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNV 548
            + S +  +    H +  + Q+     + E+ K+ +SS   +  + S+ Q  +A  +   
Sbjct: 106 KIASKLARTYTGKHGLKDLVQE---LEQVELDKTAQSSDWGNAANLSEKQLRYAANDVRY 162

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581
           ++     L   L  E    + +   + +  +VS
Sbjct: 163 LISAREKLITMLQREDRWQLAQECFQCLPVIVS 195


>gi|182677567|ref|YP_001831713.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633450|gb|ACB94224.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 204

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 74/203 (36%), Gaps = 27/203 (13%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           S +    T  +     +   + +S  D +                H  Q   G+      
Sbjct: 19  SVAVDTETLGLLPHRDRLCLVQLSGGDGQ---------------AHLVQIKPGQTHAP-- 61

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
              +L++   + +  K+ H  ++D  VL++ +G          + S +  +    H +  
Sbjct: 62  ---HLERLLIDPNVTKLFHYARFDIAVLYKTFGTMTTPLYCTKIASKLTRTYTDRHGLKD 118

Query: 508 IAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +A++ L     ++ K ++SS    D +SD+Q+  +A  +   +  L   L   L  E   
Sbjct: 119 LARELLGV---DLSKQQQSSDWGADTLSDAQLT-YAASDVLHLHALRTKLDGMLEREHRT 174

Query: 567 HVYERLDKPMIDVVSQMEITGIQ 589
            + +      +   +++++ G  
Sbjct: 175 ELAQAC-FDFLPTRAKLDLAGWA 196


>gi|70725054|ref|YP_251968.1| hypothetical protein SH0053 [Staphylococcus haemolyticus JCSC1435]
 gi|68445778|dbj|BAE03362.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
 gi|166197599|dbj|BAG06208.1| hypothetical protein [Staphylococcus aureus]
 gi|221148480|gb|ACL99841.1| hypothetical protein [Staphylococcus pseudintermedius]
 gi|238768512|dbj|BAH66824.1| hypothetical protein [Staphylococcus aureus]
 gi|283469274|emb|CAQ48485.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 369

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 115/327 (35%), Gaps = 37/327 (11%)

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ-INCGDNPIIKNILEWRQLSKIKS 682
           +   +L   +          K    +      D    I        KN   + ++ ++  
Sbjct: 54  NEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKNDEHFDKIEQLFD 113

Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742
               SL       T R++T  SL  T T R+ +   N+Q +P        +++  +    
Sbjct: 114 RLDQSL-----NGTNRLYTQLSLIGTRTHRITTKRFNVQGLPK------LVQQMILPSQF 162

Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802
           KK+ + D+   E  + A++ +   L     +   ++  +  ++       +S + R   K
Sbjct: 163 KKVYTIDFKSFEPSVAAYMTQDEQLIDYLNHEEGLYDALLRDL------SLSKEKRVSVK 216

Query: 803 TINFS-IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861
                  ++G        ++    SE      +   +F  + E+    K  V +   + T
Sbjct: 217 RAFIGSFLFGGRYSSSKFKINQEVSEINWL--QVMSKFKKVIEF----KEQVEKYKTMPT 270

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921
            +G              +      + +   +Q  A+ I +  ++ V+K+  + K   K++
Sbjct: 271 PYGIE----------HDMSAFQGSSIMAIYVQTVASYIFKHILLEVYKAQCEKK-TFKII 319

Query: 922 LQIHDELVFEV-PEEEITTASQIIVHS 947
           + IHD ++ E   +      +Q++  +
Sbjct: 320 VPIHDAIMIECNDKGIAQNVAQLMKDT 346


>gi|126732863|ref|ZP_01748654.1| 3'-5' exonuclease [Sagittula stellata E-37]
 gi|126706639|gb|EBA05713.1| 3'-5' exonuclease [Sagittula stellata E-37]
          Length = 204

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 25/218 (11%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           N          L+     +    T  +     +   + +S  D                +
Sbjct: 3   NQLHQGDLPDNLDLGPVVAIDCETMGLHPHRDRLCVVQLSAGDG---------------N 47

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
            H  Q + G+          L +   +   LK+ H  ++D   ++  +G          +
Sbjct: 48  AHLVQVARGQTEAPN-----LSRLLTDPDVLKLFHYGRFDIAAMYNAFGALAAPVYCTKI 102

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            S ++ +    H + ++ Q+ L     +I K ++SS    +      +++A  +   + +
Sbjct: 103 ASRLVRTYTDRHGLKNLTQELLGV---DISKQQQSSDWGAETLTDAQKDYAASDVLHLHR 159

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           L   L   L  E    + +      +   +++++ G  
Sbjct: 160 LRTALNAMLEREGRTEIAQAC-FDFLPARAKLDLAGWP 196


>gi|62203342|gb|AAH92837.1| Zgc:110269 [Danio rerio]
 gi|182888906|gb|AAI64364.1| Zgc:110269 protein [Danio rerio]
          Length = 333

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 32/244 (13%)

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYI-----AEKEGFAVTIISTDKDLMQLVSPTTCL 154
                 G+P I+  G EA+ + A    I        E            L QL +     
Sbjct: 98  RLLHLMGVPCIKAPG-EAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRDSE 156

Query: 155 YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG-DSIDNIPGIPGIGYKTAALLLQEYGN 213
                  +  +  +++   +  E+ V L  L G D  D I    G+G   A  L++E+  
Sbjct: 157 I-----TEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKI---GGLGPSRALKLIKEHHT 208

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--VMLRTDVPITIPLEHLILEDCNGPR 271
           +E ++ + +R   K     +    E A   RKL     + D P+      L     +   
Sbjct: 209 IEGVMEHVNR---KTHPIPLNWQYEDA---RKLFFETPKIDDPV------LAWSGPDEEG 256

Query: 272 LISFLKA---LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKT 328
           L+ FL     L+  ++  R+    +      +   +++   + +   +E         K 
Sbjct: 257 LVQFLCKEKPLKEERVRGRMKKFRETLLKRRKQREVNVQMGQTRQSRLEDFFPATRKRKA 316

Query: 329 SQFS 332
              +
Sbjct: 317 ESAA 320


>gi|222618694|gb|EEE54826.1| hypothetical protein OsJ_02264 [Oryza sativa Japonica Group]
          Length = 504

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 69/191 (36%), Gaps = 17/191 (8%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           ++   ++ + I      +  D         + ++   +          KE++   K   E
Sbjct: 212 LEPSAAQKLVIGF--DCEGVDLCRHGALCIMQIAFPDAVYLVDAIEGGKELIEACKPALE 269

Query: 459 NEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDS---GRSSHD--------IA 506
           +E+  K+ H+ K D   L+ ++GI +    D  +   +L+     +  +D        +A
Sbjct: 270 SEYVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLLEEQEGKKRGYDEYISFVSLLA 329

Query: 507 SIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVE 563
                 ++Y  KE +++     P        S++   A  ++   +L +   +  KL   
Sbjct: 330 DPRYCGMAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSIHEKMMEKLSKV 389

Query: 564 KLLHVYERLDK 574
            L  +  R + 
Sbjct: 390 SLWRLSVRSEL 400


>gi|34419236|ref|NP_899249.1| RNaseH ribonuclease [Vibrio phage KVP40]
 gi|34332917|gb|AAQ64072.1| RNaseH ribonuclease [Vibrio phage KVP40]
          Length = 310

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 16/166 (9%)

Query: 41  FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
             N L   +  ++ +        I +     +R +    YK  R +  +        +  
Sbjct: 53  VLNTLRSNVLKNKIKY-PRIILCIDNGKGGYWRKKEAWYYKFKRSEQRDESGWDFETIFD 111

Query: 101 ATQA--------FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT- 151
           A                ++I+G EADD I   T     +   V I S+D D  QL +   
Sbjct: 112 AMAQIKDEIKQNMPYYVMDIEGVEADDHIGVLTNYYVSKNVPVLITSSDGDFTQLHTSKL 171

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
              +  ++++      V  K G  PE  +  + + GD  D I  + 
Sbjct: 172 VSQWSPIQKKW-----VKPKHG-SPEMDIMYKCIKGDKKDGIAPLK 211


>gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 [Equus caballus]
          Length = 886

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 114/367 (31%), Gaps = 41/367 (11%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    K          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FKEKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQARPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP    L++ Q     P+       + 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPDSVLQKPQPQLYRPVAETPCHFVS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
               +D        +  +  L + F +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRR-EDFIVDTLELRSDMYILNESFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            + +L+     H +  + +++      E  K  + +    +    ++  +A ++++ +L 
Sbjct: 392 AARLLN--LGRHSLDHLLKRY---CSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLY 446

Query: 552 LWLLLRPKLIVEKLLHV--YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           ++  +R +L           + + +   DV  +  I  I  D+  L+    +  K+L + 
Sbjct: 447 IYDKMRLELWERGNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQ-KKHLNTQ 505

Query: 610 EENIYDL 616
           +   + L
Sbjct: 506 QLTAFQL 512


>gi|21227008|ref|NP_632930.1| flap endonuclease-1 [Methanosarcina mazei Go1]
 gi|28380015|sp|Q8PYF6|FEN_METMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|20905326|gb|AAM30602.1| FLAP endonuclease-1 [Methanosarcina mazei Go1]
          Length = 338

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 38/193 (19%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +      GIP I+    E +   A   ++  K+     + S D D     +PT       
Sbjct: 136 KYLLDIMGIPWIQAPC-EGE---AQAAHMVLKKDADC-VASQDYDSFLFGAPTVVRNLAA 190

Query: 159 KEEK---------------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
             ++               I++E  +   GI  ++++ +    G   D   G+  +G KT
Sbjct: 191 TGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICVG--TDYNKGLEKVGPKT 248

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           A  L++++GN+  +      I++K      +E  ++    ++L       P       + 
Sbjct: 249 ALKLIKKHGNIHAV------IREKGME---IEALDSI---KELFTH----PDVTDDYEIK 292

Query: 264 LEDCNGPRLISFL 276
               +  +LI+FL
Sbjct: 293 WGKPDSEKLINFL 305


>gi|270006334|gb|EFA02782.1| hypothetical protein TcasGA2_TC008519 [Tribolium castaneum]
          Length = 1050

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 93/300 (31%), Gaps = 76/300 (25%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +     +  T+T R         +      +G ++R    +PP   +I AD    EL I 
Sbjct: 667 IIPQVVVCGTLTRRAVEPTWMTASNARPDRVGSELRAMVQAPPGYNIIGADVDSQELWIA 726

Query: 759 AHI--AKITPLYQVF-----------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           + I  A    L+               +S D+H + A  +            R HAK IN
Sbjct: 727 SIIGDADRARLHGATPFGWMTLSGTKADSTDMHSVTAKAV---------GISRDHAKVIN 777

Query: 806 FSIIYGIS--------------------------PFRLATQLRIPRSEAADYIKRYFHRF 839
           ++ IYG                             F L    RI R +    ++ Y   +
Sbjct: 778 YARIYGAGQNFAERLLKQFNPSMSDGEAKTKAAKMFALTKGKRIYRLKKEFVLEYYDQNY 837

Query: 840 PGIHEY---------IEKTKNFVRQNGYVETIFGRRI---------HYDEINS------- 874
                +         I+      +  G  E+    R+             +N        
Sbjct: 838 SHWQAFEIAKTWNRRIDDMFERPKWVGGTESAMFNRLESIATSQEPRTPFLNGRLSRALE 897

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
           PK S  +      IN  +Q  AAD     ++ +   + +     +  L  HDE+ + VPE
Sbjct: 898 PKLSSDDRFLPTRINWVVQSGAADFLHLMLVCMRWIMGE---NARFCLSFHDEVRYLVPE 954


>gi|85705765|ref|ZP_01036862.1| exonuclease, putative [Roseovarius sp. 217]
 gi|85669755|gb|EAQ24619.1| exonuclease, putative [Roseovarius sp. 217]
          Length = 203

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 68/195 (34%), Gaps = 24/195 (12%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  +     +   + +S  D                  H  
Sbjct: 7   QNDLPDGLDLGSVVAIDCETMGLHPHRDRLCVVQLSGGDGH---------------AHLV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q + G+ +        L++   + + LK+ H  ++D   +H  +G          + S +
Sbjct: 52  QVAKGQTSAPN-----LERLLTDPNVLKLFHFGRFDIAAMHNAFGALAAPVYCTKIASKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H +  + Q+ L+    +I K ++SS    +   S   ++A  +   + +L   
Sbjct: 107 IRTYTDRHGLKYLLQELLNI---DISKQQQSSDWGAESLTSAQLDYAASDVLYLHRLRDE 163

Query: 556 LRPKLIVEKLLHVYE 570
           L  +L+ E  + + +
Sbjct: 164 LNTRLVREDRMGLAQ 178


>gi|226533369|ref|NP_001143931.1| hypothetical protein LOC100276743 [Zea mays]
 gi|194696098|gb|ACF82133.1| unknown [Zea mays]
 gi|195629726|gb|ACG36504.1| hypothetical protein [Zea mays]
          Length = 344

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           ++   ++ + I      +  D         + L+   +          KE++   K   E
Sbjct: 48  LEPSAAQKLVIGF--DCEGVDLCRNGALCIMQLAFPDAVYLVDAIEGGKELIQACKPALE 105

Query: 459 NEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDS------GRSSHDIASIA-- 509
           ++H  K+ H+ K D   L+ ++GI +    D  +   ++         ++S D   I+  
Sbjct: 106 SDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIQEQEQKGKKKTSDDYNYISFV 165

Query: 510 -----QKWLSYTRKE------ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
                +++      E      +L+   +   I  +SD  V+  A ++   +L ++  +  
Sbjct: 166 SLLADKRYCGIPYPEKEEVRILLRQDPNFWTIRPLSDMMVRA-ATDDVRFLLNIYEKMME 224

Query: 559 KLIVEKLLHVYERLDK 574
           KL    L  +  R + 
Sbjct: 225 KLNKVSLWRLAVRSEL 240


>gi|113927236|emb|CAL22880.1| hypothetical protein ZH05 [Staphylococcus aureus]
          Length = 366

 Score = 59.3 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 107/275 (38%), Gaps = 36/275 (13%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
            ++ K+      +L       T R++T  SL  T T R+ +   NLQ +P        ++
Sbjct: 103 DKIEKLFDRLEQAL-----NGTNRLYTQLSLIGTRTHRITTKNFNLQGLPK------AVQ 151

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
              +    KK+ + D+   E  + A++ + + L  +      ++  + +E+       +S
Sbjct: 152 HTILPSKFKKVYTVDFKSFEPSVAAYMTQDSKLIDLLNQKDGLYDALLSEL------GLS 205

Query: 795 PQMRRHAKTINFS-IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
            ++R   K       ++G +      +L                ++    ++++    F 
Sbjct: 206 DELRVFVKRAFIGSFLFGGNFKNPKFKLN---------------QYVSEVQWLDAVSQFT 250

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +    ++    +        S +  +      + +   +Q  A+ I +  ++ V+K+  +
Sbjct: 251 KV-IELKKHVEKSNSMPMPYSIEHDMSAFQGSSIMAIYVQTVASYIFKHILLEVYKAQCE 309

Query: 914 HKLATKMLLQIHDELVFEVPEEEITT-ASQIIVHS 947
            K   K+++ IHD ++ E  +EEI     Q++  +
Sbjct: 310 KK-TFKIIVPIHDAIMIECEDEEIAQNVGQLMKDT 343


>gi|26991275|ref|NP_746700.1| ribonuclease D [Pseudomonas putida KT2440]
 gi|24986330|gb|AAN70164.1|AE016655_9 ribonuclease D [Pseudomonas putida KT2440]
          Length = 377

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I + + + +  +    +   +       +D F+ K   I I                 
Sbjct: 6   HWIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQI----------------- 48

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                   Q +   + L       L    E+   +K+ H    D  VL R  G   +   
Sbjct: 49  -----GDGQRAFLIDPLLIGNWQPLADLLEDSAVVKVLHACSEDLEVLLRLTGKLPQPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     E+ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAGYLNLGFSM-GYSRLVQEVLGI---ELPKGETRSDWLQRPLSETQVSYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   V E 
Sbjct: 160 HLAELFTVLRPRLSDDKYAWVLED 183


>gi|118596598|dbj|BAF37958.1| flap endonuclease-1 [Thermoplasma sp. S02]
          Length = 336

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 104/321 (32%), Gaps = 83/321 (25%)

Query: 10  VDGSSFIY------RAFYATPLLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFA 62
           +D  + +Y      R +   PL+     G   + + G F   +  L    R         
Sbjct: 26  IDTYNILYQLLSNVRQYDGMPLM--DSHGNVTSHLYGIFYRTINLLENRIRPVY------ 77

Query: 63  VIFDYPAV-------TFRNEIYPDYK------ANRPKIPEMLLPQLPLV----------- 98
            +FD           + R  +    K        R +  E L      +           
Sbjct: 78  -VFDGKPSPLKNRTISERQLMKEKAKVELEEAIERGE--EDLRQYYSRINYITPQIVDDT 134

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS--------- 149
           +      GIP ++       +  A+Y      +G    +IS D D +   +         
Sbjct: 135 KKLLDYMGIPYVDAP--SEGEAQASYMTKKNVDG----VISQDYDCLLFGARKILRNFAI 188

Query: 150 ------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
                 P   +Y TV  E I ++ V+    I  ++++ +  L G   D   GI GIG K 
Sbjct: 189 YGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVG--TDFNEGIKGIGAKK 246

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           A  L+++ G+++++L        K+  +NI    E     +         P  +      
Sbjct: 247 ALALIKKEGDIKSVL--------KRIGKNIENLDEVIDFFKN--------PPVVDY-DFK 289

Query: 264 LEDCNGPRLISFL-KALEFTK 283
               +   +  FL    +F++
Sbjct: 290 FRKPDTDAIERFLCDEHDFSR 310


>gi|195431204|ref|XP_002063637.1| GK21315 [Drosophila willistoni]
 gi|317374897|sp|B4MR84|FEN1_DROWI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|194159722|gb|EDW74623.1| GK21315 [Drosophila willistoni]
          Length = 388

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 54/279 (19%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      ++         R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGKPPDLKSGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +   +  G+P ++    EA+   A   
Sbjct: 109 KALKAATEAGDEAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYVDAPC-EAEAQCAALV 167

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
                 G      + D D +   S     Y T  E      ++   E +++   +   + 
Sbjct: 168 K----AGKVYATATEDMDALTFGSSKLLRYLTYSEARKMPVKEFTYEKLLQGLELNQREF 223

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L G   D    I GIG K A  L+  Y ++E IL N    K     EN       
Sbjct: 224 IDLCILLG--CDYCESIKGIGPKRAIELINSYRDIETILDNLDTSK-YTVPENW------ 274

Query: 240 ARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
              + K+       P         L   + +   L+ FL
Sbjct: 275 ---NYKVARELFIEPEVADASAIDLKWTEPDEEGLVKFL 310


>gi|242767043|ref|XP_002341292.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218724488|gb|EED23905.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 771

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 98/287 (34%), Gaps = 43/287 (14%)

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
           E T  K        +   P+       +   + + + V++L+     +  +         
Sbjct: 204 ESTYPKSTYVVAPPVEFGPVETTQAVWVDTPEGVAEMVEELKKAKEIAVDLE-------- 255

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                         D  ++      + +S              +E L  L + F + + L
Sbjct: 256 ------------HHDVHTYYGLVSLMQISTRDKDWVVDTLQPWREDLQRLNEVFTDPNIL 303

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H    D + L R  G+ +    D    +  L  G     +  + +K+  Y   E  K
Sbjct: 304 KVFHGSTMDIVWLQRDLGLYVVSLFDTYHAAVAL--GFPKRSLKFLLEKYAHY---EADK 358

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL--------------LHV 568
             + +    +    ++ ++A  +++ +L ++  LR +L+ +                   
Sbjct: 359 KYQMADWRLRPLTDEMLKYARADTHYLLYIYDCLRNELLEKSTPKRNQIDYVLERSKTEA 418

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
            +R ++P+ D +      G     DLL + S + +K   ++ + +++
Sbjct: 419 LQRYERPVYDTLGGQGAGGWY---DLLSRNSGQFTKEQFAVFKAVHE 462


>gi|254476761|ref|ZP_05090147.1| 3'-5' exonuclease [Ruegeria sp. R11]
 gi|214031004|gb|EEB71839.1| 3'-5' exonuclease [Ruegeria sp. R11]
          Length = 204

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 79/215 (36%), Gaps = 27/215 (12%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   I +S  D                + H  
Sbjct: 7   QNDLPDGLDLGPVVAIDCETMGLNPHRDRLCVIQMSGGDG---------------NAHIV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYV 495
           Q + G+          L +  E+ + LK+ H  ++D   + H +G          + S +
Sbjct: 52  QVAKGQTEAPN-----LCRMLEDPNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWL 554
           + +    H + ++ Q+ +     +I K ++ S     ++SD+Q+ ++A  +   + +L  
Sbjct: 107 VRTYTDRHGLKNLTQELIGV---DISKQQQMSDWGAAQLSDAQL-DYAASDVLHLHRLRA 162

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            L  +L  E    + +      + + +++++ G  
Sbjct: 163 ALDKRLDREGRTEMAQAC-FDFLPMRAKLDLAGWP 196


>gi|311992734|ref|YP_004009602.1| RNaseH ribonuclease [Acinetobacter phage Ac42]
 gi|298684517|gb|ADI96478.1| RNaseH ribonuclease [Acinetobacter phage Ac42]
          Length = 311

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLP--------LVRLATQAFGIPAIEIQGFEADDIIAT 123
           +R +    YK NR K  E               ++    +      I++   EADDII  
Sbjct: 82  WRRDEAYYYKLNRAKAREESTFDWEAYFNALHQVISEFKEFMPYQVIDVDKGEADDIIGV 141

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            T     +G  V I+S+D D  QL   P    +  ++++      V  K G  PE    +
Sbjct: 142 LTKYLSLKGHKVRIVSSDGDFPQLQKYPNVTQWSPMQKK-----FVKPKTG-SPELDCMV 195

Query: 183 QALTGDSIDNIPGIP 197
           + + GD  D +  I 
Sbjct: 196 KIIKGDRKDCVASIK 210


>gi|262038498|ref|ZP_06011867.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261747367|gb|EEY34837.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 54

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973
           MLLQ+HDEL+FEV ++ I   +  I   ME     +    + L  N  V+ +W 
Sbjct: 1   MLLQVHDELIFEVKDDAIEKYTDKIKEIMENTVNFE---DIKLSANGSVAKDWG 51


>gi|146281747|ref|YP_001171900.1| ribonuclease D [Pseudomonas stutzeri A1501]
 gi|145569952|gb|ABP79058.1| ribonuclease D [Pseudomonas stutzeri A1501]
          Length = 401

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 67/204 (32%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +V+   + +   +   +   +       +D F+  PIA  +   D +           
Sbjct: 33  QWVVDDAHLARLCAEWRQLPFVAVDTEFMRVDTFY--PIAGLVQVGDGRRAYLI------ 84

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
             L+V                        ++   +K+ H    D  VL R  G   +   
Sbjct: 85  DPLAVRDWHP--------------FATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLF 130

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q  L     E+ K    S  + +        +A E++ 
Sbjct: 131 DTQLAAGYLNIGFSM-GYSRLVQAVLGI---ELPKGETRSDWLQRPLSEMQVRYAAEDAQ 186

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+  L PKL  +K   V E 
Sbjct: 187 HLAELYEALLPKLSDDKRAWVLED 210


>gi|72160212|gb|AAZ66769.1| flap endonuclease FEN-1a [Zea mays]
          Length = 90

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 162 KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
           + D+  V+++  +  ++ + L  L G   D    I GIG +TA  L++++G++E+IL N 
Sbjct: 26  EFDVAKVLEELELTMDQFIDLCILCG--CDYCDSIKGIGGQTALKLIRQHGSIESILENL 83

Query: 222 SR 223
           ++
Sbjct: 84  NK 85


>gi|218749845|ref|NP_001136335.1| egalitarian [Nasonia vitripennis]
          Length = 829

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 88/225 (39%), Gaps = 26/225 (11%)

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL---DSGRSSH----- 503
           L+K  E+E+ +K+ H+ K D   + H++GI++    D      V+   ++G+  +     
Sbjct: 456 LQKLLESENVIKVIHDCKNDSANLFHQFGITLVNIFDTQAAHSVIEYQNTGKPVYKVKNA 515

Query: 504 DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           ++ ++   +      L    K I +  +       ++   +  +A  +   ++ L     
Sbjct: 516 NLNTLCDLYGAPSNVLKEQLKNIYRRDQRYWARRPLTRDMIV-YASSDVQSLVPLIYNAM 574

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            KLI  ++  ++   +     ++  +    +++     ++   +I   +  L   + +  
Sbjct: 575 SKLIKPEMQKLFN--ELCEEQILMHINPNEVKV-----RKKQRKIETEVADLRRKMDETI 627

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662
           G+   LS+ +     L   L+     K K       A+ LE++  
Sbjct: 628 GKNIVLSNRE---IRLLRYLELTKEEKEKLKGSYKVAKKLEKLES 669


>gi|56417079|ref|YP_154153.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222475445|ref|YP_002563862.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|254995250|ref|ZP_05277440.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
 gi|255003431|ref|ZP_05278395.1| ribonuclease D (rnd) [Anaplasma marginale str. Puerto Rico]
 gi|255004550|ref|ZP_05279351.1| ribonuclease D (rnd) [Anaplasma marginale str. Virginia]
 gi|56388311|gb|AAV86898.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222419583|gb|ACM49606.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 204

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 27/218 (12%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                   L+     +    T  +     +   + +S+ D                 V  
Sbjct: 6   HNNDLPDGLDLGNVVAVDTETMGLVCRRDRVCLVQLSSGDGDAHL------------VKF 53

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY 494
           S D +  N         L++   N   +KI H  ++D   + H +G+         + S 
Sbjct: 54  SGDYSAPN---------LRRIVSNPEIMKIFHFARFDVAAIRHCFGMWAVPCYCTKIASR 104

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           ++ +  + H +  +  + L      I K+++SS    ++  S+   +A  +   +  +  
Sbjct: 105 LVRTYTNHHGLKDLCYELLGVK---INKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKK 161

Query: 555 LLRPKLIVEKLLHVYERLDK--PMIDVVSQMEITGIQI 590
            L   L  E    + E   K  P    +  +   G+ I
Sbjct: 162 KLDMMLEREDKQDLAESCFKFIPARAELDLLGWDGVDI 199


>gi|255943339|ref|XP_002562438.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587171|emb|CAP94835.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1083

 Score = 58.9 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 97/292 (33%), Gaps = 36/292 (12%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            +  R    E+    +   +     FG+P I     EA+   A    +   +G    I++ 
Sbjct: 752  RNERRDADEVTTIMINECQQLLTLFGLPYITAP-MEAEAQCAKLVSLGLVDG----IVTD 806

Query: 141  DKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +       E      + K++ +  +K++    L G   D   G
Sbjct: 807  DSDIF--LFGGTRVYKNMFNQSKFVECYLTSDLEKEYALHRQKLISFAHLLG--SDYTEG 862

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQKK---------RRENILEYAETARL---- 242
            IPGIG  TA  +L E+ +LE      ++++             R+   + A    L    
Sbjct: 863  IPGIGPVTALEILTEFSSLEEFRDWWTKLQTGTNTADDAHVAFRKKFRKKASKIFLPPSF 922

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
               ++     +  +            +   L +F        L+  +  + +     + P
Sbjct: 923  PDTRVDEAYLEPTVDDDPSQFQWGVPDLNGLRAF--------LMTTIGWSQERTDEVLVP 974

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353
            V+ D+N  + +G           T     F+           E+   +L  E
Sbjct: 975  VIRDMNRRDQEGTQSNITQFMQGTQGAGAFAPRVRTGGPSRMEKAFSRLRQE 1026


>gi|254463169|ref|ZP_05076585.1| 3'-5' exonuclease [Rhodobacterales bacterium HTCC2083]
 gi|206679758|gb|EDZ44245.1| 3'-5' exonuclease [Rhodobacteraceae bacterium HTCC2083]
          Length = 203

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
             L+     +    T  +     +   I +S  D                + H  Q + G
Sbjct: 12  ADLDLGPVVAIDCETMGLHPHRDRLCVIQMSGGDG---------------NAHLVQVAKG 56

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGR 500
           +          L K   + + LK+ H  ++D   +   +G          + S ++ +  
Sbjct: 57  QTEAPN-----LCKMLTDPNVLKLFHFGRFDIAAMQNAFGAVTAPVYCTKIASKLIRTYT 111

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H + ++ Q+ L+    +I K ++SS        +   E+A  +   + +L   L  +L
Sbjct: 112 DRHGLKNLLQELLNI---DISKQQQSSDWGSAKLTNAQLEYAASDVLYLHRLRTELNKRL 168

Query: 561 IVEK 564
           I E 
Sbjct: 169 IRED 172


>gi|77118191|ref|YP_338113.1| exonuclease [Enterobacteria phage K1F]
 gi|72527935|gb|AAZ72987.1| exonuclease [Enterobacteria phage K1F]
 gi|83308142|emb|CAJ29375.1| gp6 protein [Enterobacteria phage K1F]
          Length = 288

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 18/217 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPV------NAIAGFCNMLWKLLQNSRK 54
           M  +    ++DG   ++ +  A    +   D +         A     N + ++++  RK
Sbjct: 1   MSDKKIALVLDGDYLVFSSMAAAEDETDWGDDIYTLICDHAKARRILENTISEIVKK-RK 59

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +   + F      +R ++ P YKANR    + +      V          +     
Sbjct: 60  AWKDAKIVMCF-TDDYNWRKDVLPTYKANRKGSRKPVGY-KKFVAEVMADQRFNSFLRPT 117

Query: 115 FEADDIIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            E DD +       +  G     ++S DKD   +  P    +     E +        + 
Sbjct: 118 LEGDDCMGIIGTRPQIVGCDHAVLVSCDKDFKTI--PNCEFFWLTTGEILSHTTAEADY- 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
                    Q + GD+ D   GIPG+G  T    L E
Sbjct: 175 -----WHMEQTIKGDTTDGYGGIPGMGEDTTRAFLDE 206


>gi|18312112|ref|NP_558779.1| flap endonuclease-1 [Pyrobaculum aerophilum str. IM2]
 gi|28380018|sp|Q8ZYN2|FEN_PYRAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|18159543|gb|AAL62961.1| DNA endonuclease rad2 homolog [Pyrobaculum aerophilum str. IM2]
          Length = 346

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 103/318 (32%), Gaps = 71/318 (22%)

Query: 16  IYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASHFAVIFD 66
            Y A Y      R+ DG P         + ++G F   +  L    R          +FD
Sbjct: 32  AYNALYQFLASIRQPDGTPLMDRAGRITSHLSGLFYRTINLLEAGIRPVY-------VFD 84

Query: 67  YPAVTFRN-EIYPDYKANRPKIPEMLL----------------------PQLPLVRLATQ 103
                F+  EI    K     + E+L                         +   +    
Sbjct: 85  GKPPEFKLAEIEERRKTREKAMEEVLRAIKEGRREDVAKYAKRAVFITSEMVDEAKRLLS 144

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEK 162
             G+P ++    E +   A         G    + S D D +   SP          + K
Sbjct: 145 YMGVPWVQAPS-EGEAQAAYMARK----GHCWAVGSQDYDSLLFGSPKLVRNLAVSPKRK 199

Query: 163 IDIE------HVIKKWGI-------PPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL 208
           I  E       +I+   +         E+++ L  L G   D  P G+PG+G + A  L+
Sbjct: 200 IGEEVIELTPEIIELDAVLRALRLKNREQLIDLAILLG--TDYNPDGVPGVGPQKALKLI 257

Query: 209 QEYGNLENILINASRIKQKKRRENILEYAETARLSR----KLVMLRTDVPITIPLEHLIL 264
            E+G+LE +L     +K      + LE  +   L+     +      D P    L+  ++
Sbjct: 258 WEFGSLEKLLETV--LKGAYFPIDPLE-IKKFFLNPPVTDQYATEVRD-PDEAALKDFLI 313

Query: 265 EDCN--GPRLISFLKALE 280
            + +    R+   L+ L 
Sbjct: 314 REHDFSEERVSKALERLR 331


>gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana]
          Length = 639

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 30/220 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P+    +  +   KD++     L+++   +  +                          +
Sbjct: 109 PLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLE--------------------HNQYRT 148

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
           F+  T  + +S  T         L   I  YL++ F++    K+ H    D + L R +G
Sbjct: 149 FQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFG 208

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRKEILKSRKSSIPIDKISDSQVQ 539
           I +    D    S VL      + +  + + +      KE  K+     P+  +    ++
Sbjct: 209 IYVCNLFDTGQASRVL--KLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDV----MK 262

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            +A E+++ +L ++ ++R +L    +    E+ D P+++V
Sbjct: 263 RYAREDTHYLLYIYDVMRMELHT--MAKEDEQSDSPLVEV 300


>gi|313214576|emb|CBY40909.1| unnamed protein product [Oikopleura dioica]
          Length = 856

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 98/354 (27%), Gaps = 67/354 (18%)

Query: 630 GDILFTKLKFPSGAKTKTGQW-------KTTAQDLEQINCGDNP----IIKNILEWRQLS 678
             + F   +       K GQ        K +   +             IIK+I+E     
Sbjct: 429 AHVNFESDELTPLPHDKAGQKVGMLMTSKYSKNIIAGHLATKYEFGKKIIKDIMEVNTRG 488

Query: 679 KIKSTYADSLPNHI----NKRTQRVHTFYSLASTMTGRL--ASLEPNLQNIPIKTDLGQK 732
                Y +   N +                   T+T R   +       N      LG  
Sbjct: 489 SYWRAYRERFKNLLIIKDEDHYNWHLPMQVPHGTVTRRAKDSFWMVAQANDSNDDKLGMG 548

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKIT-PLYQVF-------------ENSLDIH 778
                        +SAD    E+ I +  A +   L +V                  DIH
Sbjct: 549 AFSLAQLDEDHVYVSADVDSQEIWIASLFADMYKNLGEVGVTGLSYMTLNGSKSAGTDIH 608

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            + A ++            R  AK +N++ +Y +   + A  L +PR  A   +   +  
Sbjct: 609 TITANQV---------GMDRNSAKILNYARLY-LCGKQNALDLLVPRDGAGKIVDELWRF 658

Query: 839 FPGIHEYIEKTKNF----------------------VRQNGYVETIFGRRIHYDEINSPK 876
             G    +    +                         ++     + G  +    +N   
Sbjct: 659 TKGKSVLVRNPVSETGKKILSDDGIESELFNYLMLTAAEDQPTTPVLGGNLLMPLLN--- 715

Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930
             +   +     N  IQ SA D     + ++   +E + +     L IHD + F
Sbjct: 716 -QLAPSHTTTRCNWLIQSSAVDFLHLFLANMDFLVEKYGINAHYSLSIHDMIQF 768


>gi|145336746|ref|NP_175846.3| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana]
 gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana]
 gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana]
          Length = 637

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 30/220 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P+    +  +   KD++     L+++   +  +                          +
Sbjct: 109 PLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLE--------------------HNQYRT 148

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
           F+  T  + +S  T         L   I  YL++ F++    K+ H    D + L R +G
Sbjct: 149 FQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFG 208

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRKEILKSRKSSIPIDKISDSQVQ 539
           I +    D    S VL      + +  + + +      KE  K+     P+  +    ++
Sbjct: 209 IYVCNLFDTGQASRVL--KLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDV----MK 262

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            +A E+++ +L ++ ++R +L    +    E+ D P+++V
Sbjct: 263 RYAREDTHYLLYIYDVMRMELHT--MAKEDEQSDSPLVEV 300


>gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana]
          Length = 642

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 30/220 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P+    +  +   KD++     L+++   +  +                          +
Sbjct: 109 PLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLE--------------------HNQYRT 148

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
           F+  T  + +S  T         L   I  YL++ F++    K+ H    D + L R +G
Sbjct: 149 FQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFG 208

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRKEILKSRKSSIPIDKISDSQVQ 539
           I +    D    S VL      + +  + + +      KE  K+     P+  +    ++
Sbjct: 209 IYVCNLFDTGQASRVL--KLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDV----MK 262

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            +A E+++ +L ++ ++R +L    +    E+ D P+++V
Sbjct: 263 RYAREDTHYLLYIYDVMRMELHT--MAKEDEQSDSPLVEV 300


>gi|110636308|ref|YP_676516.1| 3'-5' exonuclease [Mesorhizobium sp. BNC1]
 gi|110287292|gb|ABG65351.1| 3'-5' exonuclease [Chelativorans sp. BNC1]
          Length = 205

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 24/178 (13%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            + +    T  ++    +   + +S  D   D                 Q + G+     
Sbjct: 19  DAVAIDTETLGLNPHRDRLCVVQLSPGDGTADV---------------VQIAAGQRRAPN 63

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                L     N    K+ H  ++D  VL H +G+         + S +  +    H + 
Sbjct: 64  -----LVALLRNRRITKLFHYARFDIAVLYHSFGVMPDPVFCTKIASRLTRTYTDRHGLK 118

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            I  + L      + K+++SS    +    +  E+A  +   + +L  +L+ +L+ + 
Sbjct: 119 DICYELLQVN---LSKAQQSSDWAAEQLTPEQLEYAASDVLYLHRLADVLQQRLMRDG 173


>gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae]
          Length = 733

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 94/249 (37%), Gaps = 15/249 (6%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K +    LS+    ++ ++     +    +    +   +    +I      + W   +  
Sbjct: 155 KPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPI 214

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               S ++ +   D  ++K IA+ +   +  D  S+      + +S    +D        
Sbjct: 215 WVDTSTELESMLEDLKNTKEIAVDL---EHHDYRSYYGIVCLMQIST-RERDYLVDTLKL 270

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDI 505
           +E L  L + F N   +K+ H    D + L R  G+ + G  D    S  +  G   H +
Sbjct: 271 RENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAI--GLPRHSL 328

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIV- 562
           A + + + ++       S+K  +   +I      +  +A  +++ +L ++  LR KLI  
Sbjct: 329 AYLLENFANFKT-----SKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIES 383

Query: 563 EKLLHVYER 571
            KL  V   
Sbjct: 384 NKLAGVLYE 392


>gi|307173481|gb|EFN64391.1| Flap endonuclease 1-B [Camponotus floridanus]
          Length = 382

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 85/281 (30%), Gaps = 56/281 (19%)

Query: 28  RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPK 86
              DG   + + G F   +  + Q  +          +FD      ++         R +
Sbjct: 54  TTVDGETTSHLMGTFHRTIRLVEQGIKPVY-------VFDGKPPNLKSGELAKRAERRDE 106

Query: 87  IPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIAT 123
             ++L                              +   Q  GIP I+    EA+   A 
Sbjct: 107 AQKLLQAAEEDGNVEAIDKFSRRLVKVTKNHADEAKQLLQLMGIPYIDAPC-EAEAQCAA 165

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
                   G      + D D +           T+ E      ++I ++ V+    +  +
Sbjct: 166 LVK----AGKVFATATEDMDALTFGCDILLRRLTLSEARKLPVQEIHMDKVLTGLELNHD 221

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L  + G   D    I G+G K A  L++ Y +L+ I+ N    K       I E  
Sbjct: 222 EFIDLCIMLG--CDYTGSIKGVGPKRAIELIKNYRSLDKIIENIDTKKYP-----IPENW 274

Query: 238 ETARLSRKLVMLRTDVPITIPLEH--LILEDCNGPRLISFL 276
                + K   L    P     E   L   + +   L+ FL
Sbjct: 275 -----NYKEARLLFQEPEVANAEDIQLKWSEPDEEGLVKFL 310


>gi|115390695|ref|XP_001212852.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
 gi|114193776|gb|EAU35476.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
          Length = 1131

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 101/306 (33%), Gaps = 36/306 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +     FG+P I     EA+   A    +   +G    II+ 
Sbjct: 813  KKDRRDADEVSQIMISECQQLLTLFGLPYITAP-MEAEAQCAELVSLGLVDG----IITD 867

Query: 141  DKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +       E      + K++ +   K++    L G   D   G
Sbjct: 868  DSDIF--LFGGTRVYKNMFNQSKFVECYLTSDLEKEYALHRRKLISFAHLLG--SDYTEG 923

Query: 196  IPGIGYKTAALLLQEYGNLENILI---------NASRIKQKKRRENILEYAETARLSRKL 246
            IPG+G  TA  +L E+ +LE             NA+        +   + A    L    
Sbjct: 924  IPGVGPVTALEILTEFSSLEEFRDWWSQVQMGMNANDGSHAAFYKKFKKQASKIFLPPAF 983

Query: 247  VMLRTDV-----PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
               R DV      +            +   L ++        L+  +  + +     + P
Sbjct: 984  PDPRVDVAYLEPEVDSDPSPFQWGVPDLHGLRNY--------LMATIGWSQERTDEVLVP 1035

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
            V+ D+N  E +G                 F+  + +      E+   +L  E      Q 
Sbjct: 1036 VIRDMNRREQEGTQSNITSFFQGPQGAGAFAPRARRGGPSRMEKAFSRLRQEAEAGSRQA 1095

Query: 362  PINNDS 367
              ++++
Sbjct: 1096 LQDDEA 1101


>gi|212540874|ref|XP_002150592.1| DNA excision repair protein Rad2 [Penicillium marneffei ATCC 18224]
 gi|210067891|gb|EEA21983.1| DNA excision repair protein Rad2 [Penicillium marneffei ATCC 18224]
          Length = 1127

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 90/272 (33%), Gaps = 36/272 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    I++ 
Sbjct: 813  KKDRRDADEISQIMVSECQQLLRLFGLPYITAP-MEAEAQCAELVSLGLVDG----IVTD 867

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D    +   T +Y  +  +   +E      + K++ +   K++    L G   D   G
Sbjct: 868  DSDTF--LFGGTRIYKNMFNQSKFVECFLSNDLEKEYALDRVKLIQFAHLLG--SDYTEG 923

Query: 196  IPGIGYKTAALLLQEYGNLENILI---------NASRIKQKKRRENILEYAETARL---- 242
            IPG+G  TA  ++ E+ NLE                    ++ R+   + A    L    
Sbjct: 924  IPGVGPVTALEIITEFNNLEEFRDWWMQVQMGVEIPNDPHQQFRKKFKKMATKVFLPPSF 983

Query: 243  -SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
              R +        +            +   L SF        L+  +  +       + P
Sbjct: 984  PDRHIDEAYMQPEVDSDPSEFQWGVPDLNGLRSF--------LMATIGWSQQRTDEVLVP 1035

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
            V+ D+N  E +G            +    F+ 
Sbjct: 1036 VIRDMNKREQEGTQSNITRFMSGAVGAGAFAP 1067


>gi|332142368|ref|YP_004428106.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552390|gb|AEA99108.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 289

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 74/177 (41%), Gaps = 19/177 (10%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           ++  LK    +     IG N K+D L+L  ++      + D M M+  L     S D+ S
Sbjct: 57  LVEELKSLEASNGVRLIGQNTKFDGLILAEKHNFIPSYYCDTMAMAKGLWPHHKS-DLDS 115

Query: 508 IAQKWL-----SYTRKEILK-SRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKL 560
           + ++        +   E+     K+   I+     Q+  ++ +++S++  + +       
Sbjct: 116 LTKRLFPNDKSKHKGTELESFKGKTYEDIEADGTEQILIQYGVQDSDITYESFK------ 169

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQI-DQDLLKQVSAEISKNLLSLEENIYDL 616
              ++   Y + +  +ID+  +M    + + D  L+ +V+ E +K   S+ +   D 
Sbjct: 170 ---QMEQWYPKPEMDIIDMTVRMFCDPVFVLDTSLMDRVAVEATKEKESVIQTAIDF 223


>gi|83591355|ref|YP_425107.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170]
 gi|83574269|gb|ABC20820.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 206

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 26/199 (13%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +    T  ++    +   + +S  D        V  +  DL                  
Sbjct: 24  IAVDTETMGLNPHRDRLCVVQLSGGDNIA----HVVHLNRDLQAPV-------------- 65

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
              L     +   LKI H  ++D   +H   G+         + S +  +   SH + ++
Sbjct: 66  ---LASLLGDPSVLKIMHFGRFDIASIHHGLGVLCEPVYCTKIASKLCRTNTDSHGLKAL 122

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            +  L     ++ K +++S    +    +   +A  +   +  L   L   L  E    +
Sbjct: 123 CKDLLGV---DLSKHQQTSDWGAESLSPEQLTYAASDVLYLHALKARLDGLLAREGRTTL 179

Query: 569 YERLDKPMIDVVSQMEITG 587
            E      +   + +++ G
Sbjct: 180 AEGC-FRFLPTRALLDLAG 197


>gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13]
          Length = 733

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 94/249 (37%), Gaps = 15/249 (6%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K +    LS+    ++ ++     +    +    +   +    +I      + W   +  
Sbjct: 155 KPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPI 214

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               S ++ +   D  ++K IA+ +   +  D  S+      + +S    +D        
Sbjct: 215 WVDTSTELESMLEDLKNTKEIAVDL---EHHDYRSYYGIVCLMQIST-RERDYLVDTLKL 270

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDI 505
           +E L  L + F N   +K+ H    D + L R  G+ + G  D    S  +  G   H +
Sbjct: 271 RENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAI--GLPRHSL 328

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIV- 562
           A + + + ++       S+K  +   +I      +  +A  +++ +L ++  LR KLI  
Sbjct: 329 AYLLENFANFKT-----SKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIES 383

Query: 563 EKLLHVYER 571
            KL  V   
Sbjct: 384 NKLAGVLYE 392


>gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a]
 gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291]
 gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118]
          Length = 733

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 94/249 (37%), Gaps = 15/249 (6%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K +    LS+    ++ ++     +    +    +   +    +I      + W   +  
Sbjct: 155 KPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPI 214

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               S ++ +   D  ++K IA+ +   +  D  S+      + +S    +D        
Sbjct: 215 WVDTSTELESMLEDLKNTKEIAVDL---EHHDYRSYYGIVCLMQIST-RERDYLVDTLKL 270

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDI 505
           +E L  L + F N   +K+ H    D + L R  G+ + G  D    S  +  G   H +
Sbjct: 271 RENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAI--GLPRHSL 328

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIV- 562
           A + + + ++       S+K  +   +I      +  +A  +++ +L ++  LR KLI  
Sbjct: 329 AYLLENFANFKT-----SKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIES 383

Query: 563 EKLLHVYER 571
            KL  V   
Sbjct: 384 NKLAGVLYE 392


>gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c]
 gi|14195186|sp|Q12149|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName:
           Full=Ribosomal RNA-processing protein 6
 gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae]
 gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c]
          Length = 733

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 94/249 (37%), Gaps = 15/249 (6%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K +    LS+    ++ ++     +    +    +   +    +I      + W   +  
Sbjct: 155 KPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPI 214

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               S ++ +   D  ++K IA+ +   +  D  S+      + +S    +D        
Sbjct: 215 WVDTSTELESMLEDLKNTKEIAVDL---EHHDYRSYYGIVCLMQIST-RERDYLVDTLKL 270

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDI 505
           +E L  L + F N   +K+ H    D + L R  G+ + G  D    S  +  G   H +
Sbjct: 271 RENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAI--GLPRHSL 328

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIV- 562
           A + + + ++       S+K  +   +I      +  +A  +++ +L ++  LR KLI  
Sbjct: 329 AYLLENFANFKT-----SKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIES 383

Query: 563 EKLLHVYER 571
            KL  V   
Sbjct: 384 NKLAGVLYE 392


>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
 gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
           Group]
 gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
 gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
          Length = 600

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 90/247 (36%), Gaps = 28/247 (11%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +    + +  +T + +   +    +KL+++   +  +                     
Sbjct: 133 EPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLE-------------------- 172

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                SF+  T  + +S  T         L   I  YLK+ F++    K+ H    D + 
Sbjct: 173 HNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMW 232

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R + I +    D    S VL   R+S  +  + + +   T     K  +++    +  
Sbjct: 233 LQRDFHIYVCNLFDTGQASRVLQMERNS--LEHLLRHFCGVTA---NKEYQNADWRSRPL 287

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL--HVYERLDKPMIDVVSQMEITGIQIDQ 592
             ++ ++A E+++ +L ++ L+R +L  E      +   + K   ++  Q+    +  D 
Sbjct: 288 SDEMIKYAREDTHYLLYMYDLMRLRLQKESTSDNDLLLEVQKRSNEICLQLYEKELLTDT 347

Query: 593 DLLKQVS 599
             L    
Sbjct: 348 SYLHIYG 354


>gi|13928294|dbj|BAB46986.1| hypothetical protein [Staphylococcus aureus]
          Length = 344

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 103/266 (38%), Gaps = 35/266 (13%)

Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734
            ++ K+      +L       T R++T  SL  T T R+ +   NLQ +P        ++
Sbjct: 103 DKIEKLFDRLEQAL-----NGTNRLYTQLSLIGTRTHRITTKNFNLQGLPK------AVQ 151

Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794
              +    KK+ + D+   E  + A++ + + L  +      ++  + +E+       +S
Sbjct: 152 HTILPSKFKKVYTVDFKSFEPSVAAYMTQDSKLIDLLNQKDGLYDALLSEL------GLS 205

Query: 795 PQMRRHAKTINFS-IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853
            ++R   K       ++G +      +L                ++    ++++    F 
Sbjct: 206 DELRVFVKRAFIGSFLFGGNFKNPKFKLN---------------QYVSEVQWLDAVSQFT 250

Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913
           +    ++    +        S +  +      + +   +Q  A+ I +  ++ V+K+  D
Sbjct: 251 KV-IELKKHVEKSNSMPMPYSIEHDMSAFQGSSIMAIYVQTVASYIFKHILLKVYKAQCD 309

Query: 914 HKLATKMLLQIHDELVFEVPEEEITT 939
            K   K+++ IHD ++ E  +EEI  
Sbjct: 310 QK-TFKIIVPIHDAIMIECEDEEIAQ 334


>gi|253744402|gb|EET00616.1| Flap structure-specific endonuclease [Giardia intestinalis ATCC
           50581]
          Length = 361

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 104/315 (33%), Gaps = 59/315 (18%)

Query: 5   NHLFLVDGSSFIYRAFY------ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           N +  +D S  +Y+  +                G   + + G  + + ++++   K    
Sbjct: 28  NRVIAIDASVMLYQ--FITTITSGDGTALANSSGEITSHLVGLLSKVTRMVEAGIKP--- 82

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ------------------------ 94
                +FD      +       +  R      L  Q                        
Sbjct: 83  ---IFVFDGKPPEDKQGELEKRRQAREAA--ELEQQKAEEEGDIERAKQLSRRTVKVTQQ 137

Query: 95  -LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
                       GIP +   G EA+            EG    + S+D D++   SP+  
Sbjct: 138 HCKQAEKLLDILGIPYVVAAG-EAEAQCVAMAKAGLCEG----VASSDLDVLAFGSPSLI 192

Query: 154 LYDTVKEEK----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                  +K    I+++ V+ + G   ++ + L  L G   D    + GIG KTA  L+ 
Sbjct: 193 RNLAQGGDKEIMEINLDTVLNELGFSYDEFLDLCILCG--CDYANSLEGIGPKTAYKLIV 250

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           +Y ++E  L       Q K  E  + +   AR +R+L    T +      + +     N 
Sbjct: 251 KYRSIEEALAA----DQGKLAEKAVNW-PYAR-ARELFKNPTVINPKEIKKTIKWRPINR 304

Query: 270 PRLISFL-KALEFTK 283
              + FL + +EF +
Sbjct: 305 SEAMQFLVEEMEFDR 319


>gi|196012971|ref|XP_002116347.1| hypothetical protein TRIADDRAFT_64268 [Trichoplax adhaerens]
 gi|190580938|gb|EDV21017.1| hypothetical protein TRIADDRAFT_64268 [Trichoplax adhaerens]
          Length = 1146

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 110/385 (28%), Gaps = 109/385 (28%)

Query: 663  GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722
              + I  +I    Q  K    Y   LP      T       +   T +        N + 
Sbjct: 747  KHDEIADSIRNHSQF-KPLQKYGAILPPVAPAGTVTRRAVEATWLTAS--------NAKA 797

Query: 723  IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA-----KITPLYQVFE----- 772
              + ++L   IR    +PP    + AD    EL I A  A     +      +       
Sbjct: 798  NRVGSELKAMIR----APPGYHFVGADVDSQELWIAALYADARFGRTHGCTAIGWMTLQG 853

Query: 773  ---NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLR--IP 824
                  D+H   A         +     R  AKT N+  IYG       RL  Q    + 
Sbjct: 854  KKSQGTDLHSKTA---------ETVGISRDQAKTFNYGRIYGAGLNYAQRLMRQFNPSMT 904

Query: 825  RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ------------NGYVETIFGR--RIHYD 870
              +A+D  K  +    GI  Y  K     ++            + +++T      R H  
Sbjct: 905  LEDASDKAKILYASTKGITIY--KLTRKGKKILQKLDPDTILDDDWIDTTGHEILRKHLR 962

Query: 871  ------EINSPKSSIRNINERAAINA---------------------------------- 890
                   I S        +E    NA                                  
Sbjct: 963  GKKLDSYIKSKSKQWIGGSESEMFNALEAIALSEKPKTPILECRISQALEPKVVGNAYLP 1022

Query: 891  -----PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE------ITT 939
                  +Q SA D     ++ +    E + +  +  + IHDE+ + V  E+         
Sbjct: 1023 SRINWVVQSSAVDYLHLILVCMRWLFEKYNINGRFCISIHDEVRYLVKSEDRFRAALALQ 1082

Query: 940  ASQIIVHSMEKACLPKINLRVPLKV 964
             + ++  +M    +   +L  PL V
Sbjct: 1083 ITNLLTRAMFAHKIKIYDL--PLSV 1105


>gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1432

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 22/200 (11%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K    +  +D  S   +  T     ++ L       I++ +   ++N  ++         
Sbjct: 359 KAIAITDHADVQSFPEAYHTGASEKMKILYGYEANMIDDHAL-LVLNPTEMD-----YRN 412

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLS------VHTSQD 438
                F + T  + + +   I I    +   +  +   +       LS         + +
Sbjct: 413 REYVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDE 472

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIMLM 492
             G     K+++   K+F+ +      GHN+++D       L R G+    +   D + +
Sbjct: 473 MVGAADDEKDVIKKFKEFYGD--RPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           S +L   ++ H + S+A+K+
Sbjct: 531 SRLLHPEQTRHTLDSLAKKY 550


>gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 384

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 88/317 (27%), Gaps = 124/317 (39%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN------------------- 773
           +R   I+P  KKL+ AD S IE R+LA +A  TP    F +                   
Sbjct: 33  LRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITH 92

Query: 774 ---------------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI---- 808
                                  DI++   A  FG+  + V+ + R+  K    ++    
Sbjct: 93  GALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGG 152

Query: 809 ----------IYGISPFRLATQLRIPRSEAAD---------------------------- 830
                     +Y I    +A Q  +P     +                            
Sbjct: 153 GVGAFAAFAAMYHIDLEAMAEQAALPPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDV 212

Query: 831 YIKRYFHRFPGIHEYIEKTK----------NFVRQNGYVETIFGR---RIHYD------- 870
           + + + +  P I  + +  +                  +   + R   R+H         
Sbjct: 213 FKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHTCCGITMQYSRAWLRMHLPSGRVLYY 272

Query: 871 ----------------EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
                              + K +         +    Q  + D+    M ++  +    
Sbjct: 273 AAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAA---- 328

Query: 915 KLATKMLLQIHDELVFE 931
               +++L +HDE++ E
Sbjct: 329 --GYQIVLTVHDEIITE 343


>gi|302415469|ref|XP_003005566.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
 gi|261354982|gb|EEY17410.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
          Length = 308

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 17/161 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   +  G+P I     EA+   A         G  V    S D D +   +P    + 
Sbjct: 141 CQKLLRLMGVPFIIAP-TEAEAQCAVLAK-----GGKVYAAASEDMDTLTFETPILLRHL 194

Query: 157 TVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E++      I ++ V++  G+   + V L  L G   D +  +P +G  TA  L++E
Sbjct: 195 TYSEQRKEPIQEIHLDKVMEGLGMERNQFVDLCILLG--CDYLDPVPKVGPSTALKLIRE 252

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251
           +  LE ++       + K    + E     R +R +   R 
Sbjct: 253 HKTLEGVVDYIKNDPKSKYT--LPEDWPFRRRARTVSQPRR 291


>gi|241207041|ref|YP_002978137.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860931|gb|ACS58598.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 208

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G+ +    T  +     +   + +S  D   D                 + + G
Sbjct: 16  DAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTAD---------------IIRIAAG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +          L    E+    KI H  ++D  VL H +G++        + S ++ +  
Sbjct: 61  QKEARN-----LVALLEDPTHQKIFHYGRFDIAVLFHTFGVTATPVFCTKIASRLIRTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     ++ K+++SS    +       E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKEMLDV---DVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERL 172

Query: 561 IVEK 564
           I + 
Sbjct: 173 IRDG 176


>gi|260813766|ref|XP_002601587.1| hypothetical protein BRAFLDRAFT_124349 [Branchiostoma floridae]
 gi|229286886|gb|EEN57599.1| hypothetical protein BRAFLDRAFT_124349 [Branchiostoma floridae]
          Length = 1237

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 55/164 (33%), Gaps = 27/164 (16%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +      A T+T R         +      +G +++    +PP    I AD    EL I 
Sbjct: 804 IIPRVVTAGTVTRRAVEPTWLTASNARPDRVGSELKAIVQAPPGYHFIGADVDSQELWIA 863

Query: 759 -----AHIAKITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
                A+ A                  +  D+H   A+ I            R HAK  N
Sbjct: 864 AILGDANFAGFHGCTSFGWMTLQGKKSSGTDLHSKTASTI---------GISRDHAKVFN 914

Query: 806 FSIIYGIS-PFR----LATQLRIPRSEAADYIKRYFHRFPGIHE 844
           +  IYG   PF     L    R+ + EA +  K+ +    G+ E
Sbjct: 915 YGRIYGAGQPFAERLLLQFNHRMTQEEAGEKAKQMYAATKGVRE 958



 Score = 41.2 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 22/120 (18%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +      A T+T R         +      +G +++    +PP    I AD    EL I 
Sbjct: 971  IIPRVVTAGTVTRRAVEPTWLTASNARPDRVGSELKAIVQAPPGYHFIGADVDSQELWIA 1030

Query: 759  -----AHIAKITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
                 A+ A                  +  D+H   A+ I            R HAK + 
Sbjct: 1031 AILGDANFAGFHGCTSFGWMTLQGKKSSGTDLHSKTASTI---------GISRDHAKFVT 1081


>gi|302842273|ref|XP_002952680.1| hypothetical protein VOLCADRAFT_93304 [Volvox carteri f.
           nagariensis]
 gi|300262024|gb|EFJ46233.1| hypothetical protein VOLCADRAFT_93304 [Volvox carteri f.
           nagariensis]
          Length = 652

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            V +IS D D++QL++   C +   ++++  +        +PP       AL G +   +
Sbjct: 201 RVVVISADSDMLQLLAYPGCCWLEQQQQQATL--------LPPAAYPDFLALVGKAEAGV 252

Query: 194 PGIPGIGYKTAALLLQEYGNLENILINASR-IKQKKRR 230
           PG+ G+G + +  LL  YG++  I+      I     R
Sbjct: 253 PGV-GLGSRASKKLLARYGSISGIIRAYDEGILDGTLR 289


>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 364

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 2   IINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  LKI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLKDLEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        +AI++   
Sbjct: 100 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYAIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L   +    +E+
Sbjct: 156 LIQLKEYLQQQLAKSEYQDFFEQ 178


>gi|148546540|ref|YP_001266642.1| ribonuclease D [Pseudomonas putida F1]
 gi|148510598|gb|ABQ77458.1| ribonuclease D [Pseudomonas putida F1]
          Length = 377

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I + + + +  +    +   +       +D F+ K   I I                 
Sbjct: 6   HWIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQI----------------- 48

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                   Q +   + L       L    E+   +K+ H    D  VL R  G   +   
Sbjct: 49  -----GDGQRAFLIDPLLIGNWQPLADLLEDSGVVKVLHACSEDLEVLLRLTGKLPQPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     E+ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAGYLNLGFSM-GYSRLVQEVLGI---ELPKGETRSDWLQRPLSETQVSYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   V E 
Sbjct: 160 HLAELFTVLRPRLSDDKYAWVLED 183


>gi|326429821|gb|EGD75391.1| flap endonuclease-1 [Salpingoeca sp. ATCC 50818]
          Length = 380

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 88/286 (30%), Gaps = 64/286 (22%)

Query: 28  RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVT-------FRNEIYPD 79
              +G   + ++G F   +  +    +          +FD    T        R E   +
Sbjct: 54  TNAEGETTSHLSGIFYRTIRMVNNGVKPVY-------VFDGKPPTLKSGELAKRTERRKE 106

Query: 80  Y-----------------KANR---PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
                             K  R      PE         +      GIP I     EA+ 
Sbjct: 107 AQSKLEAATEEGVQADMEKFTRRLVKVTPEHNRQ----CQELLDLMGIPYIVAPC-EAEA 161

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWG 173
             A         G      + D D +   +     + T  E +       +++ V++   
Sbjct: 162 QCAELVK----AGKVFATATEDMDALTFGTSVLLRHMTFSEARKMPIQQFELKKVLEGLD 217

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE-- 231
           +  ++ + L  L G   D    I GIG   A  L++E+ ++E IL    + K+K      
Sbjct: 218 LSQDEFIDLCILLG--CDYCDKIGGIGRVRAYSLIKEHHSIEAILEAIKKEKKKYTVPDD 275

Query: 232 -NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
               E  E    + ++     D+ +   +        +  +L+ F+
Sbjct: 276 WKFAEARE-LFKNPEVA-PAKDIDLKWNI-------PDVDKLVDFM 312


>gi|121699074|ref|XP_001267903.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
 gi|119396045|gb|EAW06477.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
          Length = 1140

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 91/272 (33%), Gaps = 36/272 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P +     EA+   A    +   +G    II+ 
Sbjct: 806  KKDRRDADEVTQVMITECQQLLRLFGLPYVTAP-MEAEAQCAELVSLGLVDG----IITD 860

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D+   +   T +Y  +  +   +E      + K++ +   K++    L G   D   G
Sbjct: 861  DSDIF--LFGGTRVYKNMFNQSKYVECYLTSDMEKEYALQRRKLISFAHLLG--SDYTEG 916

Query: 196  IPGIGYKTAALLLQEYGNLENILINASRIKQK---------KRRENILEYAETARLSR-- 244
            I GIG  TA  +L E+ +LE      ++I+              +   + A    L    
Sbjct: 917  ISGIGPVTALEILTEFSSLEEFRDWWTQIQTGMSIPNDQHAAFYKKFRKTATKIFLPPSF 976

Query: 245  ---KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301
               ++     +  +            +   L  F        L+  +  + +     + P
Sbjct: 977  PDARVDTAYLEPEVDSDPSPFQWGVPDLHGLRDF--------LMTTIGWSQERTDEILVP 1028

Query: 302  VVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
            V+ D+N  E +G                 F+ 
Sbjct: 1029 VIRDMNRREQEGTQANITSFFTGPQGAGAFAP 1060


>gi|255711770|ref|XP_002552168.1| KLTH0B08756p [Lachancea thermotolerans]
 gi|238933546|emb|CAR21730.1| KLTH0B08756p [Lachancea thermotolerans]
          Length = 1023

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 28/227 (12%)

Query: 71  TFRNEIYPDYKANRPKIPEMLLPQLPL-VRLATQAFGIPAIEIQGFEADDIIATYTYIAE 129
           TF +E   D      +  + +   +   V+     FGIP +     EA+   A    +  
Sbjct: 736 TFVDEELHDQHLRDKRDSDEVTAAMVAEVQDLLTRFGIPFMTAP-MEAEAQCAELLMLGL 794

Query: 130 KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALT 186
            +G    II+ D D+              ++   E    + + K+ G+  EK + L  L 
Sbjct: 795 VDG----IITDDSDIFLFGGDKVYKNMFQEKNYVEYYYSDLMKKELGLDREKFIELAQLL 850

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246
           G   D   G+  +G  +A  +L E+GNL N     S  +  K+++      E  RL +KL
Sbjct: 851 G--SDYTTGVKSVGPVSAMEILAEFGNLHNFRNWYSDGQFNKKKQEEEPTFEK-RLRKKL 907

Query: 247 VM----LRTDVPITIPLEHLILED------------CNGPRLISFLK 277
           V     L T+ P  +  E  +  +             +  RL SF +
Sbjct: 908 VTSEVILDTEFPSDLVKEAYLRPEVDHDATRFTWGVPDLDRLRSFFQ 954


>gi|218508865|ref|ZP_03506743.1| ribonuclease III protein [Rhizobium etli Brasil 5]
 gi|327190020|gb|EGE57137.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 208

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G+ +    T  +     +   + +S  D   D                 + + G
Sbjct: 16  DAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADV---------------IRIAAG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +          L    E+    KI H  ++D  VL H +G++        + S +  +  
Sbjct: 61  QKEAPN-----LVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     +I K+++SS    +       E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKEMLDV---DISKTQQSSDWAAETLSQAQLEYAASDVLYLHALRDKLTARL 172

Query: 561 IVEK 564
           I + 
Sbjct: 173 IRDG 176


>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
          Length = 599

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 90/247 (36%), Gaps = 28/247 (11%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +    + +  +T + +   +    +KL+++   +  +                     
Sbjct: 132 EPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLE-------------------- 171

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                SF+  T  + +S  T         L   I  YLK+ F++    K+ H    D + 
Sbjct: 172 HNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMW 231

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L R + I +    D    S VL   R+S  +  + + +   T     K  +++    +  
Sbjct: 232 LQRDFHIYVCNLFDTGQASRVLQMERNS--LEHLLRHFCGVTA---NKEYQNADWRSRPL 286

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL--HVYERLDKPMIDVVSQMEITGIQIDQ 592
             ++ ++A E+++ +L ++ L+R +L  E      +   + K   ++  Q+    +  D 
Sbjct: 287 SDEMIKYAREDTHYLLYMYDLMRLRLQKESTSDNDLLLEVQKRSNEICLQLYEKELLTDT 346

Query: 593 DLLKQVS 599
             L    
Sbjct: 347 SYLHIYG 353


>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
 gi|295313032|ref|ZP_06803730.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
 gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 363

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 2   IINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  LKI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLKDLEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        +AI++   
Sbjct: 100 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYAIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L   +    +E+
Sbjct: 156 LIQLKEYLQQQLAKSEYQDFFEQ 178


>gi|156836721|ref|XP_001642408.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156112928|gb|EDO14550.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1037

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 34/233 (14%)

Query: 69  AVTF-RNEIYPD-YKANRPK---IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
           + TF  +E++    K  R      PEM++     V+     FGIP I     EA+   A 
Sbjct: 750 SSTFLEDELFEQQMKDKRDSDEVTPEMVIA----VQELLSRFGIPYIVAP-MEAEAQCAE 804

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMV 180
              +   +G    II+ D D+              ++   E  D++ +     +  + M+
Sbjct: 805 LLLLKLVDG----IITDDSDVFLFGGAKIYKNMFQEKKYVEFYDVQSINSNLALDRKNMI 860

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR---IKQKK--------- 228
            L  L G   D   G+ G+G   +  +L ++G LE            K K+         
Sbjct: 861 DLALLLG--SDYTNGVKGLGPVLSMEVLADFGTLERFKEWYDEGMFDKSKQESDSKFRKD 918

Query: 229 RRENILEYAETA---RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
            R+ +++          S+ ++    +  +       +    +   L  F++ 
Sbjct: 919 LRKKLIKNEVVLSSEFPSKLVIDSYINPEVDHDKTSFVWGTPDLDMLREFMRR 971


>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
 gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|167009819|ref|ZP_02274750.1| ribonuclease III [Francisella tularensis subsp. holarctica FSC200]
 gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
 gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
 gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
          Length = 364

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 2   IINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  LKI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLKDLEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        +AI++   
Sbjct: 100 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYAIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L   +    +E+
Sbjct: 156 LIQLKEYLQQQLAKSEYQDFFEQ 178


>gi|313497620|gb|ADR58986.1| Rnd [Pseudomonas putida BIRD-1]
          Length = 377

 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I + + + +  +    +   +       +D F+ K   I I                 
Sbjct: 6   HWIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQI----------------- 48

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                   Q +   + L       L    E+   +K+ H    D  VL R  G   +   
Sbjct: 49  -----GDGQRAFLIDPLLIGNWQPLADLLEDSGVVKVLHACSEDLEVLLRLTGKLPQPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     E+ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAGYLNLGFSM-GYSRLVQEVLGI---ELPKGETRSDWLQRPLSETQVSYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   V E 
Sbjct: 160 HLAELFSVLRPRLSDDKYAWVLED 183


>gi|320540762|ref|ZP_08040350.1| putative Ssb-binding protein, misidentified as ExoIX [Serratia
          symbiotica str. Tucson]
 gi|320029176|gb|EFW11267.1| putative Ssb-binding protein, misidentified as ExoIX [Serratia
          symbiotica str. Tucson]
          Length = 72

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 16/83 (19%)

Query: 6  HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
          HL +VD  + I R  +A         G P   I      L +L+Q+SR     +H   +F
Sbjct: 4  HLLIVDALNLIRRI-HAV-------QGSP--CIHACRFALQQLIQHSR----PTHAVAVF 49

Query: 66 DY--PAVTFRNEIYPDYKANRPK 86
          D    + ++R++I P+YKA R  
Sbjct: 50 DEDDRSTSWRHQILPNYKAGRSP 72


>gi|312385968|gb|EFR30352.1| hypothetical protein AND_00127 [Anopheles darlingi]
          Length = 385

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 21/184 (11%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  G+P +E    EA+   A         G      + D D +   S     + T 
Sbjct: 142 KELLRLMGVPYVEAPC-EAEAQCAALVK----AGKVYATATEDMDALTFGSNILLRHLTF 196

Query: 159 KE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            E      ++   E V+K + +  ++ + +  L G   D    I GIG K A  L+ ++ 
Sbjct: 197 SEARKMPVQEFHYEKVLKGFELTADEFIDMCILLG--CDYCDTIRGIGPKKAIELINKHR 254

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL 272
           ++E IL +  + K     +    Y +  RL ++      +V     +E L   + +   L
Sbjct: 255 SIEQILEHLDKSKYVVPEDW--NYQQARRLFKE-----PEVADAAEIE-LKWSEPDEEGL 306

Query: 273 ISFL 276
           + +L
Sbjct: 307 VKYL 310


>gi|150951537|ref|XP_001387875.2| ribosomal RNA processing 3'-5' exonuclease [Scheffersomyces
           stipitis CBS 6054]
 gi|149388676|gb|EAZ63852.2| ribosomal RNA processing 3'-5' exonuclease [Pichia stipitis CBS
           6054]
          Length = 792

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 89/260 (34%), Gaps = 34/260 (13%)

Query: 318 TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI 377
            E + + +I+    +            Q      LE+ + ++     + + T +   +++
Sbjct: 183 PEPNYENSIEIVDPAFYPQPYEYEIDTQPYPASILEKSEPIAPQDWTSTTATWVDTVEEL 242

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
           Q+ V++L+     +  +                       D  S+      + +S +  Q
Sbjct: 243 QKMVEELKKSSEIAVDLE--------------------HHDYRSYYGIVCLMQIS-NRDQ 281

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
           D        ++ L  L   F N H +K+ H    D + L R  G+ +    D    S  L
Sbjct: 282 DWIIDTLALRDDLECLNTVFTNPHIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKSL 341

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWL 554
                       +  +L  T      S+K  +   +I      +  +A  +++ +L ++ 
Sbjct: 342 -------GFPKFSLAYLLETFAHFKTSKKYQLADWRIRPLSPPMMAYARSDTHFLLSIFD 394

Query: 555 LLRPKLIV---EKLLHVYER 571
            L+ KLI    EKL  V   
Sbjct: 395 QLKNKLIDAGNEKLQRVLFD 414


>gi|17647423|ref|NP_523765.1| flap endonuclease 1 [Drosophila melanogaster]
 gi|122102839|sp|Q7K7A9|FEN1_DROME RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|3929699|emb|CAA21320.1| EG:EG0003.3 [Drosophila melanogaster]
 gi|7302871|gb|AAF57944.1| flap endonuclease 1 [Drosophila melanogaster]
 gi|261260009|gb|ACX54939.1| MIP14376p [Drosophila melanogaster]
          Length = 385

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 54/279 (19%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      ++         R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGKPPDLKSGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +      G+P ++    EA+   A   
Sbjct: 109 KALKAATDAGDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPC-EAEAQCAALV 167

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
                 G      + D D +   S     Y T  E      ++   + +++   I   + 
Sbjct: 168 K----AGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREF 223

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L G   D    I GIG K A  L+  Y ++E IL N    K     EN       
Sbjct: 224 IDLCILLG--CDYCESIKGIGPKRAIELINTYRDIETILDNLDSSK-YTVPENW------ 274

Query: 240 ARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
              + K+       P     +   L   + +   L+ FL
Sbjct: 275 ---NYKVARELFIEPEVADADSIDLKWVEPDEEGLVKFL 310


>gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group]
          Length = 949

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 79/251 (31%), Gaps = 30/251 (11%)

Query: 313 GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
           G        + T+ ++SQ     ++         P         +  +   +   Y  + 
Sbjct: 93  GSGHHGSEAQPTSQESSQKVHPFEEEITSLLNNPPDFQNFMPGDRCPEMSTS---YNWVE 149

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
               ++   + L+   + +      ++                     SF   T  + +S
Sbjct: 150 TDAQLEDLARLLDDEKAFAVDTEQHSL--------------------RSFLGYTALMQIS 189

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
              + D         +++S L+  F N    KI H    D L L R + I +    D   
Sbjct: 190 TQKA-DYLIDTIALHDVMSILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMFDTAK 248

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
              VL   +    +A + + +   T     K+ +      +    ++ ++A  +++ +L 
Sbjct: 249 ACEVL--SKPQKSLAYLLELYCGVTTD---KTMQREDWRLRPLTPEMIQYARCDAHYLLY 303

Query: 552 LWLLLRPKLIV 562
           +   L  +L  
Sbjct: 304 IANCLASELHA 314


>gi|323354056|gb|EGA85902.1| Rad27p [Saccharomyces cerevisiae VL3]
          Length = 382

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 88/302 (29%), Gaps = 54/302 (17%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
               G   + + G   M ++ L+         +   +FD      ++       + R + 
Sbjct: 55  TNEAGETTSHLMG---MFYRTLRMIDNGIKPCY---VFDGKPPDLKSHELTKRSSRRVET 108

Query: 88  PEMLLPQ--------------------LPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
            + L                           +      GIP I     EA+   A     
Sbjct: 109 EKKLAEATTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAP-TEAEAQCAELAKK 167

Query: 128 AEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180
                  V    S D D +   +P    + T  E       +ID E V++   +  E+ V
Sbjct: 168 G-----KVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFV 222

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA--E 238
            L  + G   D    I  +G  TA  L++ +G++E I+      +    +  I E    +
Sbjct: 223 DLCIMLG--CDYCESIRXVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYK 280

Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATTY 292
            AR+     +      I     +L         LI +               I+R+    
Sbjct: 281 QARM-----LFLDPEVIDGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGL 335

Query: 293 DC 294
             
Sbjct: 336 KS 337


>gi|218199707|gb|EEC82134.1| hypothetical protein OsI_26176 [Oryza sativa Indica Group]
          Length = 949

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 79/251 (31%), Gaps = 30/251 (11%)

Query: 313 GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
           G        + T+ ++SQ     ++         P         +  +   +   Y  + 
Sbjct: 93  GSGHHGSEAQPTSQESSQKVHPFEEEITSLLNNPPDFQNFMPGDRCPEMSTS---YNWVE 149

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
               ++   + L+   + +      ++                     SF   T  + +S
Sbjct: 150 TDAQLEDLARLLDDEKAFAVDTEQHSL--------------------RSFLGYTALMQIS 189

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
              + D         +++S L+  F N    KI H    D L L R + I +    D   
Sbjct: 190 TQKA-DYLIDTIALHDVMSILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMFDTAK 248

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
              VL   +    +A + + +   T     K+ +      +    ++ ++A  +++ +L 
Sbjct: 249 ACEVL--SKPQKSLAYLLELYCGVTTD---KTMQREDWRLRPLTPEMIQYARCDAHYLLY 303

Query: 552 LWLLLRPKLIV 562
           +   L  +L  
Sbjct: 304 IANCLASELHA 314


>gi|46138549|ref|XP_390965.1| hypothetical protein FG10789.1 [Gibberella zeae PH-1]
          Length = 395

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 16/185 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A       + G      S D D +   +P    + T
Sbjct: 141 CQRLLKLMGIPYIIAP-TEAEAQCAVLA----QAGKVYAAASEDMDTLCFNTPILLRHLT 195

Query: 158 VKEEKIDI------EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++ +       + V++   +  ++ V L  L G   D +  IP +G  TA  +++++
Sbjct: 196 FSEQRKEPIQEIRLDKVLEGLNMERKQFVDLCILLG--CDYLDPIPKVGPSTALKMIRDH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
           G+LE ++       +KK    I E     + +R L           P      E  +   
Sbjct: 254 GSLEKVVEAMENDSKKKY--VIPEDWPY-KDARDLFFEPDVRQADHPDCDFKWEKPDMEG 310

Query: 272 LISFL 276
           L+ FL
Sbjct: 311 LVKFL 315


>gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1432

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 22/200 (11%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K    +  +D  S   +  T     ++ L       I++ +   ++N  ++         
Sbjct: 359 KAIAITDHADVQSFPEAYHTGASEKMKILYGYEANMIDDHAL-LVLNPTEMD-----YRD 412

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLS------VHTSQD 438
                F + T  + + +   I I    +   +  +   +       LS         + +
Sbjct: 413 REYVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDE 472

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIMLM 492
             G     K+++   K+F+ +      GHN+++D       L R G+    +   D + +
Sbjct: 473 MVGAADDEKDVIKKFKEFYGD--RPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           S +L   ++ H + S+A+K+
Sbjct: 531 SRLLHPEQTRHTLDSLAKKY 550


>gi|195488056|ref|XP_002092153.1| GE14031 [Drosophila yakuba]
 gi|317374898|sp|B4P5U9|FEN1_DROYA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|194178254|gb|EDW91865.1| GE14031 [Drosophila yakuba]
          Length = 387

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 83/279 (29%), Gaps = 54/279 (19%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      ++         R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGKPPDLKSGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +      G+P ++    EA+   A   
Sbjct: 109 KALKAATDAGDDAGIEKFNRRLVRVTKEHANEAKELLTLMGVPYVDAPC-EAEAQCAALV 167

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
                 G      + D D +   S     Y T  E      ++   E +++   I   + 
Sbjct: 168 K----AGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYEKLLEGLSINSREF 223

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L G   D    I GIG K A  L+  Y ++E IL N    K     EN       
Sbjct: 224 IDLCILLG--CDYCESIKGIGPKRAIELINNYRDIETILDNLDSSK-YTVPENW------ 274

Query: 240 ARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
              + K+       P     +   L   + +   L+ FL
Sbjct: 275 ---NYKVARELFIEPEVANADNIDLKWVEPDEEGLVKFL 310


>gi|126460720|ref|YP_001056998.1| flap endonuclease-1 [Pyrobaculum calidifontis JCM 11548]
 gi|166973705|sp|A3MY15|FEN_PYRCJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|126250441|gb|ABO09532.1| flap endonuclease 1 [Pyrobaculum calidifontis JCM 11548]
          Length = 346

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 105/316 (33%), Gaps = 69/316 (21%)

Query: 16  IYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASHFAVIFD 66
            Y A Y      R+ DG P         + ++G F   +  L    +          +FD
Sbjct: 32  AYNALYQFLASIRQPDGTPLMDRAGRITSHLSGLFYRTINLLEAGVKPVY-------VFD 84

Query: 67  YPAVTF-------RNEIYPDY-----KANRPKIPEMLL-----------PQLPLVRLATQ 103
                F       R +          KA R    E +              +   +    
Sbjct: 85  GKPPEFKLLEIEQRKKAKEKALEEVEKAIREGRREDVAKYAKRAIFLTSEMVEDAKKLLT 144

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK- 162
             GIP ++    E +   A         G    + S D D +   SP       V  ++ 
Sbjct: 145 YMGIPWVQAPS-EGEAQAAHMAKR----GHCWAVGSQDYDSLLFGSPRLVRNLAVSPKRK 199

Query: 163 ------------IDIEHVIKKWGIP-PEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL 208
                       I+++ V+K   +   E+++ L  L G   D  P G+PG+G + A  L+
Sbjct: 200 VGEEVVELSPELIELDAVLKSLKLKGREQLIDLAILLG--TDYNPEGVPGVGPQKALKLI 257

Query: 209 QEYGNLENILINASR-----IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
            E+G+LE +L    +     +   K RE  L    T + S +L        + + +E   
Sbjct: 258 WEFGSLEKLLQTVLKGVQFPVDPLKIREFFLNPPVTDQYSTELSTPDERKIVELLVEE-- 315

Query: 264 LEDCNGPRLISFLKAL 279
             D +  R+   L+ L
Sbjct: 316 -HDFSQERVAKALERL 330


>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
 gi|224456967|ref|ZP_03665440.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370381|ref|ZP_04986386.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
 gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
          Length = 364

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 2   IINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  LKI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLKDLEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        +AI++   
Sbjct: 100 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYAIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L   +    +E+
Sbjct: 156 LIQLKEYLQQQLAKSEYQDFFEQ 178


>gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2]
 gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2]
          Length = 381

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 82/223 (36%), Gaps = 30/223 (13%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  + + + +   V  L+   + +  +  D+M  +  K   +  ST  +         
Sbjct: 6   QDYLHVESGEALTSIVGILQKETAIAVDLEADSMFHYQEKVCLLQFSTPSK--------N 57

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
            +   L+V                LS L   F++    KI H   YD   L+R + I + 
Sbjct: 58  ILVDPLAVKD--------------LSPLAPIFKSFGICKIFHGADYDIRSLYRDFKIEVN 103

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D  + +  L  G +   +AS+ Q  L+ T K   K  +      +   + + ++A+ 
Sbjct: 104 ALFDTQIAARFL--GLTDIGLASLLQGKLNITLK---KKYQKKDWSQRPLPAPMLQYAVH 158

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           ++  ++ L   LR +L+    L   E  ++  +    +    G
Sbjct: 159 DTCHLIPLAQNLREELVKTGRLPFVE--EECQLQTTVRSASPG 199


>gi|50306309|ref|XP_453127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642261|emb|CAH00223.1| KLLA0D01309p [Kluyveromyces lactis]
          Length = 744

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 107/292 (36%), Gaps = 19/292 (6%)

Query: 288 VATTYDCDAANIEPVV-LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           +    D D +N +P   ++      K     TE+     +   +  SL  Q  +I+ +  
Sbjct: 112 LKYLNDDDRSNNKPSKRIEKPQLSFKTPVDNTELHPFKPLLEYKPHSL--QPFEISLKMV 169

Query: 347 PQKLFLERLQKLS-QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           P++  +        +Y I++  Y   +         +  +   +     + + ++    +
Sbjct: 170 PEEESIPSHYPHPYEYEIDHQKYNDSILVATEPIPSKDWDETEAIWVDTV-EGLNKMKDE 228

Query: 406 P-IAIAIST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
              A  ++  L+  D  S+      + +S     D        +E L  L   F + +  
Sbjct: 229 LSKATELAIDLEHHDYRSYYGIVCLMQIS-DREHDWIVDTIALREELYILNDIFTDPNVT 287

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H    D + L R  G+ + G  D    S +L  G   H +A + +++ ++       
Sbjct: 288 KVLHGAFMDIIWLQRDLGLYIVGLFDTYHASRML--GFPKHSLAYLLERFANFKT----- 340

Query: 523 SRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLR-PKLIVEKLLHVYER 571
           S+K  +   +I      +  +A  +++ +L ++  LR   L   K+  V   
Sbjct: 341 SKKYQLADWRIRPLTKPMLAYARADTHFLLNIFDKLRNSLLEQNKMSDVLHE 392


>gi|254450150|ref|ZP_05063587.1| 3'-5' exonuclease [Octadecabacter antarcticus 238]
 gi|198264556|gb|EDY88826.1| 3'-5' exonuclease [Octadecabacter antarcticus 238]
          Length = 203

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 26/189 (13%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   + +S  D                + H  
Sbjct: 7   QNDLPDGLDLGAVVAIDCETMGLNPHRDRLCLVQLSGGDG---------------NCHLI 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q + G+ T        L K   +   LK+ H  ++D   +   +G          + S +
Sbjct: 52  QVAGGQTTAPN-----LCKVLADPQVLKLFHFGRFDIAAMLNAFGTVTAPVYCTKIASKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILK-SRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           + +    H + ++ Q++L   R +I K  ++S    D++S +Q+ ++A  +   + +L  
Sbjct: 107 IRTYTDRHGLKNLLQEFL---RVDISKFQQQSDWGADQLSKAQL-DYAASDVLYLHKLRD 162

Query: 555 LLRPKLIVE 563
            L  +L  E
Sbjct: 163 ELNIRLARE 171


>gi|327479994|gb|AEA83304.1| ribonuclease D [Pseudomonas stutzeri DSM 4166]
          Length = 374

 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 67/204 (32%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +V+   + +   +   +   +       +D F+  PIA  +   D +           
Sbjct: 6   QWVVDDAHLARLCAEWRQLPFVAVDTEFMRVDTFY--PIAGLVQVGDGRRAYLI------ 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
             L+V                        ++   +K+ H    D  VL R  G   +   
Sbjct: 58  DPLAVRDWHP--------------FATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q  L     E+ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAGYLNIGFSM-GYSRLVQAVLGI---ELPKGETRSDWLQRPLSEMQVRYAAEDAQ 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+  L PKL  +K   V E 
Sbjct: 160 HLAELYEALLPKLSDDKRAWVLED 183


>gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
 gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
          Length = 1432

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 22/200 (11%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K    +  +D  S   +  T     ++ L       I++ +   ++N  ++         
Sbjct: 359 KAIAITDHADVQSFPEAYHTGASEKMKILYGYEANMIDDHAL-LVLNPTEMD-----YRD 412

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLS------VHTSQD 438
                F + T  + + +   I I    +   +  +   +       LS         + +
Sbjct: 413 REYVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDE 472

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIMLM 492
             G     K+++   K+F+ +      GHN+++D       L R G+    +   D + +
Sbjct: 473 MVGAADDEKDVIKKFKEFYGD--RPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           S +L   ++ H + S+A+K+
Sbjct: 531 SRLLHPEQTRHTLDSLAKKY 550


>gi|219125938|ref|XP_002183226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|317374908|sp|B7G7Y7|FEN1_PHATC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|217405501|gb|EEC45444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 421

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 44/230 (19%)

Query: 26  LSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR 84
           +    +G   + I G F   +  + +  R          +FD      ++      +  R
Sbjct: 57  MLTNAEGETTSHIQGMFNRTIRYMTEGIRP-------VFVFDGKPPDVKSHELIKRREKR 109

Query: 85  PKIPEMLLP-----------------------QLPLVRLATQAFGIPAIEIQGFEADDII 121
            K    L                         +    R      G+P +     EA+   
Sbjct: 110 EKAQAALAVASEEGNVEEQDKQSKRLVRAGTKENEDCRKLLTLMGVPVVTAPC-EAEAQA 168

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIP 175
           A         G      + D D +   +P      T         + ++   VI+   I 
Sbjct: 169 AALCK----AGLVYATGTEDMDALTFATPILVRKLTFANASKSMVQTMNYNKVIEGLAIS 224

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
            ++ V L  + G   D    I G+G KTA  L++E+GN+E ++    R K
Sbjct: 225 HDQFVDLCIMLG--CDYCDTIRGVGPKTALKLIREHGNIEKVIETIDRKK 272


>gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys]
          Length = 912

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 116/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 199 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 256

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q      I       I 
Sbjct: 257 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPPDSVLQKPQPQLYRSIEETPCHLIS 316

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 317 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 356

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 357 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 415

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 416 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 468

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 469 LYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 527

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 528 TQQLTAFQL 536


>gi|45198651|ref|NP_985680.1| AFR133Cp [Ashbya gossypii ATCC 10895]
 gi|44984661|gb|AAS53504.1| AFR133Cp [Ashbya gossypii ATCC 10895]
          Length = 970

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 77/229 (33%), Gaps = 41/229 (17%)

Query: 74  NEIYPD-YKANRPK---IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE 129
           +E+Y    K  R      PEM+      ++     FGIP +     EA+   A    +  
Sbjct: 689 DELYEQNTKDKRDADEVTPEMIRD----IQQLLSIFGIPYLTAP-MEAEAQCAELLRLKL 743

Query: 130 KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALT 186
            +G    II+ D D+              ++   E  + E +  + G+   K + L  L 
Sbjct: 744 IDG----IITDDSDVFLFGGSKVFKNMFQEKNYVEYYNTETISAELGLDRLKFIALAQLM 799

Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR---LS 243
           G   D   GI GIG  +   +L  Y  LE      +     + R+++L+  E+     L 
Sbjct: 800 G--SDYTNGIKGIGPVSGIEILANYNTLEEFRTWYNE---GQFRKSLLD-KESLFQKNLR 853

Query: 244 RKLVM----------------LRTDVPITIPLEHLILEDCNGPRLISFL 276
           +KL                     +  +       +        L +FL
Sbjct: 854 KKLTKSGVVLGDDFPSAAVSDAYLNPEVDHDTTKFVWGLPELDSLRTFL 902


>gi|190346361|gb|EDK38425.2| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1035

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 80/220 (36%), Gaps = 28/220 (12%)

Query: 75  EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
           E Y   K +  ++ E ++     V+   + FGIP I     EA+   A    +   +G  
Sbjct: 759 EQYNKAKRDSDEVTETMIRD---VQELLKRFGIPYITAP-MEAEAQCAELMKLGLVDG-- 812

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPPEKMVCLQALTGDSID 191
             II+ D D               +++      I+ +  K G+  + ++ L  L G   D
Sbjct: 813 --IITDDSDCFLFGGQKVYKNMFNQKQYVECYFIDEISHKVGLDQKNLIELALLLG--SD 868

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR----KLV 247
              GI GIG   A  +L E+ NL N      +       E+ L   + + L+R    KL 
Sbjct: 869 YTEGIKGIGPVMAVEILAEFSNLTNFKNWLDKNSISVVDESELSPLKKSLLNRVKNGKLF 928

Query: 248 -------MLRTDVPITIPLEH----LILEDCNGPRLISFL 276
                   +  D  +   ++           N  ++ SFL
Sbjct: 929 LPNSFPDTVVFDAYLNPEVDDDTTPFRWGVPNLDQIRSFL 968


>gi|118596628|dbj|BAF37974.1| flap endonuclease-1 [Thermoplasma sp. P61]
          Length = 328

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 103/321 (32%), Gaps = 83/321 (25%)

Query: 10  VDGSSFIY------RAFYATPLLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFA 62
           +D  + +Y      R +   PL+     G   + + G F   +  L    R         
Sbjct: 26  IDTYNILYQLLSNVRQYDGMPLM--DSHGNVTSHLYGIFYRTINLLENKIRPVY------ 77

Query: 63  VIFDYPAV-------TFRNEIYPDYK------ANRPKIPEMLLPQLPLV----------- 98
            +FD           + R  +    K        R +  E L      +           
Sbjct: 78  -VFDGKPSPLKNRTISERQLMKEKAKVELEEAIERGE--EDLRQYYSRINYITPQIVDDT 134

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS--------- 149
           +      GIP I+       +  A+Y      +G    +IS D D +   +         
Sbjct: 135 KKLLDYMGIPYIDAP--SEGEAQASYMTKKNVDG----VISQDYDCLLFGARKILRNFAI 188

Query: 150 ------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
                 P   +Y TV  E I ++ V+    I  ++++ +  L G   D   GI GIG K 
Sbjct: 189 YGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVG--TDFNEGIKGIGAKK 246

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           A  L+++ G+++ +L         K  EN+ E  +             + P+        
Sbjct: 247 ALALIKKEGDIKAVLRRI-----GKNIENLDEIID----------FFKNPPVVDY--DFK 289

Query: 264 LEDCNGPRLISFL-KALEFTK 283
               +   +  FL    +F++
Sbjct: 290 FRKPDTDAIEHFLCDEHDFSR 310


>gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
          Length = 364

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 2   IINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  LKI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLKDLEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        +AI++   
Sbjct: 100 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYAIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L+  +    +E+
Sbjct: 156 LIQLKEYLQQQLVKSEYQDFFEQ 178


>gi|115689891|ref|XP_001200735.1| PREDICTED: similar to exosome component 10, partial
           [Strongylocentrotus purpuratus]
          Length = 376

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 76/220 (34%), Gaps = 27/220 (12%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P    LE +   S  P+    +T +     +++  + L+     +  +   +  ++   
Sbjct: 96  EPLPSQLEPVDNPSYTPLEATPFTLVDTVSKLEELSRSLKQSKEIAVDLEHHSYRSYLGF 155

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + IST +                      D        +  L  L   F +   +K+
Sbjct: 156 TCLMQISTAEH---------------------DYVVDTLELRSELQMLNDAFTDPKIVKV 194

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D   L R  G+ +    D    S  L  G   H +AS+  ++    + E  K  
Sbjct: 195 FHGANMDFDWLQRDLGLYVVNMFDTHQASRSL--GFPHHSLASLLSRY---CQVEADKQY 249

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           + +    +    ++  +A E+++ +L ++  ++ +LI   
Sbjct: 250 QLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRG 289


>gi|88607131|ref|YP_505646.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
 gi|88598194|gb|ABD43664.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
          Length = 204

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 56/136 (41%), Gaps = 5/136 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L+K   +   LKI H  ++D   +   +G+         + S ++ +  + H +  +  +
Sbjct: 62  LRKVISDPGVLKIFHFARFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDLCYE 121

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            L      I K+++SS    ++  ++   +A  +   +  +   L   L  E+   + E 
Sbjct: 122 LLGVK---INKAQQSSDWGREVLTAEQLSYAAADVIYLHAIKKKLDMMLEREEKQELAEA 178

Query: 572 LDKPMIDVVSQMEITG 587
                + V +++++ G
Sbjct: 179 C-FKFVPVRAELDLLG 193


>gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 206

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
            LK    +   +KI H  ++D  +L  Y G+         + S ++ +    H +  +  
Sbjct: 63  RLKSLLVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLKELCL 122

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDS-QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
             L       L   K S      S + +   +A  +   +  +   L   L  EK + + 
Sbjct: 123 DLLGVR----LNKGKQSSDWGSTSLTREQMSYAASDVLYLHAIKEALDVMLKREKRIELA 178

Query: 570 E 570
            
Sbjct: 179 R 179


>gi|262193925|ref|YP_003265134.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077272|gb|ACY13241.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score = 58.1 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS--SHDI 505
           + L  + +   +   +KI HN ++++ V  + G+ +    D + +S  L   +    H +
Sbjct: 811 DDLGPVSELLASRAVVKIIHNAQFERSVFRKLGMDIENVFDTLKVSRRLRGRKREGGHGL 870

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            ++  + L    +E+ K  + S    +    +  ++A  ++ V+L L      +L+V 
Sbjct: 871 GAVCARELG---RELDKHEQRSDWTQRPLTQRQLDYAALDAEVLLALHERFTRELLVP 925


>gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1432

 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 22/200 (11%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K    +  +D  S   +  T     ++ L       I++ +   ++N  ++         
Sbjct: 359 KAIAITDHADVQSFPEAYHTGASEKMKILYGYEANMIDDHAL-LVLNPTEMD-----YRN 412

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLS------VHTSQD 438
                F + T  + + +   I I    +   +  +   +       LS         + +
Sbjct: 413 REYVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDE 472

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIMLM 492
             G     K+++   K+F+ +      GHN+++D       L R G+    +   D + +
Sbjct: 473 MVGVADDEKDVIKKFKEFYGD--RPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEV 530

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           S +L   ++ H + S+A+K+
Sbjct: 531 SRLLHPEQTRHTLDSLAKKY 550


>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 364

 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            +   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 2   IVNTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  LKI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLKDLEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        +AI++   
Sbjct: 100 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYAIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L   +    +E+
Sbjct: 156 LIQLKEYLQQQLAKSEYQDFFEQ 178


>gi|146417652|ref|XP_001484794.1| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1035

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 80/220 (36%), Gaps = 28/220 (12%)

Query: 75  EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
           E Y   K +  ++ E ++     V+   + FGIP I     EA+   A    +   +G  
Sbjct: 759 EQYNKAKRDSDEVTETMIRD---VQELLKRFGIPYITAP-MEAEAQCAELMKLGLVDG-- 812

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPPEKMVCLQALTGDSID 191
             II+ D D               +++      I+ +  K G+  + ++ L  L G   D
Sbjct: 813 --IITDDSDCFLFGGQKVYKNMFNQKQYVECYFIDEISHKVGLDQKNLIELALLLG--SD 868

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR----KLV 247
              GI GIG   A  +L E+ NL N      +       E+ L   + + L+R    KL 
Sbjct: 869 YTEGIKGIGPVMAVEILAEFSNLTNFKNWLDKNSISVVDESELSPLKKSLLNRVKNGKLF 928

Query: 248 -------MLRTDVPITIPLEH----LILEDCNGPRLISFL 276
                   +  D  +   ++           N  ++ SFL
Sbjct: 929 LPNSFPDTVVFDAYLNPEVDDDTTPFRWGVPNLDQIRSFL 968


>gi|270012325|gb|EFA08773.1| hypothetical protein TcasGA2_TC006462 [Tribolium castaneum]
          Length = 421

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 88/256 (34%), Gaps = 25/256 (9%)

Query: 326 IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
           ++  +      QT+++ +                Q    +  Y  ++N +   + + ++E
Sbjct: 1   MEKEESQQAEVQTAEVTTCNEESVKKFCDADIAGQDSCESHPYKHLLNFEPTVEQLSRVE 60

Query: 386 TIGSASFKIIT--------DTMDAFHSKP-----IAIAISTLDQKDDTSFKVETIFIDLS 432
            I +      T         +++   +       + + +   D        +  I     
Sbjct: 61  NIEAPKTLKETPLCDIDTKTSLEELITDLKAWKELGVDVEYSDHGYKALTCLVQISTP-- 118

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
               +D        K+ L  L + F N   +KI H+   D   L +  G+ +    D  +
Sbjct: 119 ---DKDYIIDAIALKDELHALNEVFTNPDIVKIFHSAVNDLKWLQQDLGVFVVNLFDTQI 175

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
               L  G     + ++ Q +  +  K+  K+ +      +    + +++A  +S+ ++ 
Sbjct: 176 AMKAL--GYKKLGLDALLQDY--HVAKD--KTMQRQDFRRRPLPPKFKDYARVDSHYLIG 229

Query: 552 LWLLLRPKLIVEKLLH 567
            +  L+ +LI   LL 
Sbjct: 230 FYHKLKNELIEANLLR 245


>gi|195584050|ref|XP_002081828.1| GD25512 [Drosophila simulans]
 gi|317374895|sp|B4QIG6|FEN1_DROSI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|194193837|gb|EDX07413.1| GD25512 [Drosophila simulans]
          Length = 385

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 54/279 (19%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      ++         R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGKPPDLKSGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +      G+P ++    EA+   A   
Sbjct: 109 KALKAATDAGDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPC-EAEAQCAALV 167

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
                 G      + D D +   S     Y T  E      ++   + +++   I   + 
Sbjct: 168 K----AGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREF 223

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L G   D    I GIG K A  L+  Y ++E IL N    K     EN       
Sbjct: 224 IDLCILLG--CDYCESIKGIGPKRAIELINTYRDIETILDNLDSSK-YTVPENW------ 274

Query: 240 ARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
              + K+       P     +   L   + +   L+ FL
Sbjct: 275 ---NYKVARELFIEPEVANADSIDLKWVEPDEEGLVKFL 310


>gi|195335051|ref|XP_002034189.1| GM20026 [Drosophila sechellia]
 gi|317374894|sp|B4HTA1|FEN1_DROSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|194126159|gb|EDW48202.1| GM20026 [Drosophila sechellia]
          Length = 385

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 54/279 (19%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      ++         R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGKPPDLKSGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +      G+P ++    EA+   A   
Sbjct: 109 KALKAATDAGDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPC-EAEAQCAALV 167

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
                 G      + D D +   S     Y T  E      ++   + +++   I   + 
Sbjct: 168 K----AGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREF 223

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L G   D    I GIG K A  L+  Y ++E IL N    K     EN       
Sbjct: 224 IDLCILLG--CDYCESIKGIGPKRAIELINTYRDIETILDNLDSSK-YTVPENW------ 274

Query: 240 ARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
              + K+       P     +   L   + +   L+ FL
Sbjct: 275 ---NYKVARELFIEPEVANADSIDLKWVEPDEEGLVKFL 310


>gi|225543341|ref|NP_001017611.2| probable flap endonuclease 1 homolog [Danio rerio]
 gi|317374871|sp|B0UXL7|FEN1B_DANRE RecName: Full=Probable flap endonuclease 1 homolog; Short=FEN-1
           homolog; AltName: Full=Flap structure-specific
           endonuclease 1 homolog
 gi|169158098|emb|CAQ13364.1| novel protein similar to flap structure-specific endonuclease 1
           (fen1, zgc:110269) [Danio rerio]
          Length = 350

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 23/182 (12%)

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYI-----AEKEGFAVTIISTDKDLMQLVSPTTCL 154
                 G+P I+  G EA+ + A    I        E            L QL +     
Sbjct: 115 RLLHLMGVPCIKAPG-EAEALCAHLAKIGTVNAVASEDMDTLAFGGTVLLRQLNAKRDSE 173

Query: 155 YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
                  +  +  +++   +  E+ V L  L G   D    I G+G   A  L++E+  +
Sbjct: 174 I-----TEYSLPKLLEALQLKYEEFVDLCILLG--CDYCDKIGGLGPSRALKLIKEHHTI 226

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274
           E ++ + +R           +Y +  +L  +    + D P+      L   + +   L+ 
Sbjct: 227 EGVMEHVNRKTHPIPLNW--QYKDARKLFFE--TPKIDDPV------LAWSEPDEEGLVQ 276

Query: 275 FL 276
           FL
Sbjct: 277 FL 278


>gi|255721529|ref|XP_002545699.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
 gi|240136188|gb|EER35741.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
          Length = 963

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 43/206 (20%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+   + FGIP I     EA+   A    I   +G    I++ D D              
Sbjct: 709 VQELLRRFGIPFITAP-MEAEAQCAELFRIGLVDG----IVTDDSDCFLFGGDKIYKNMF 763

Query: 158 VKEEK---IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            +++       + +  K G+  +K++ L  L G   D   GI GIG   A  +L E+G+L
Sbjct: 764 DQKQYVECYMQDDLSTKMGLTRKKLIELALLLG--SDYTEGIKGIGPVLAMEILAEFGDL 821

Query: 215 ENILI--------NASRIKQKKRRENILEYA----------------ETARLSRKLVMLR 250
           +               +      ++N+L                   E A L+ +     
Sbjct: 822 KKFKQWFDQHTKSQVDKSNPTTLQKNLLSRIKKGNLYLPDSFPDAIVENAYLNPE----- 876

Query: 251 TDVPITIPLEHLILEDCNGPRLISFL 276
               +            N  ++ SFL
Sbjct: 877 ----VDSDKTKFKWGVPNLDQIRSFL 898


>gi|439149|gb|AAA64535.1| DNA polymerase [Bacillus phage SPO1]
          Length = 91

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK------ 726
           E+R+ + + + +   L   I+     VH  Y++  T+TGRL+S EPN Q  P K      
Sbjct: 1   EFRKANHLYNNFVSKLSLMIDPDNI-VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPTL 59

Query: 727 TDLGQKIRRAFISP--PTKKLISADYSQIELR 756
                +I++ F S       ++  DYSQ+ELR
Sbjct: 60  FQYNFEIKKMFNSRFGDGGVIVQFDYSQLELR 91


>gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum]
          Length = 892

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 113/300 (37%), Gaps = 27/300 (9%)

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
           L++R  +  + ++A+  P  + +N+  +K + ++ ++     +  ++   +     K N+
Sbjct: 151 LLSRFNSAGETNSASNTPHRITVNSASSK-VLVKPQVAYGIPVDNTEADFVPRLKEKHNA 209

Query: 344 EQTPQKLFLERLQ-------KLSQYPINNDSYTKIVNTKD---------IQQWVQKLETI 387
              P +    R +         S    +   Y   + T             + ++ ++  
Sbjct: 210 VSEPIRSLHIRDEDCDNDSAWSSDQQESAHPYQLELETFKVPPSQLELGNVRQLRPIKDT 269

Query: 388 GSASFKIITDTMDAFHSKPIAIA-IST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
                    + +     +  +++  +  L+     SF   T  + +S    +D       
Sbjct: 270 ELVMVD-DAEKLKMLRDELNSVSKFAVDLEHHSYRSFLGLTCLMQIST-DEKDYIIDPFP 327

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
               +  L + F N + LK+ H  +YD   L R +GI + G  D     +VL+   + + 
Sbjct: 328 IWNDMQILNEPFTNPNILKVFHGSEYDVQWLQRDFGIYVVGMFDTFCAMHVLN--FAKYS 385

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +A + Q   S     + K  + +    +   +   E+A  +++ +L  +  LR +LI E 
Sbjct: 386 LAHLVQ---SICNVTLDKELQKADWRVRPLTTAHIEYARSDTHYLLYCYDTLRQRLINEG 442


>gi|242218119|ref|XP_002474853.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725980|gb|EED79945.1| predicted protein [Postia placenta Mad-698-R]
          Length = 882

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 77/235 (32%), Gaps = 31/235 (13%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
           T           +S        +T + ++      + KL +    +  +   +   F   
Sbjct: 225 TYPDRMFASAPPMSPRSFAETPFTWVADSTAFSAMLNKLRSAQEIAIDLEYHSYRTFGGF 284

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + +ST +                     +D        ++ +  L + F +   +K+
Sbjct: 285 VCLMQLSTRE---------------------EDWVVDTLAVRDEMEALNEVFTDSQIVKV 323

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H  + D + L + + + +    D    S VLD     H +A++ + +      +    +
Sbjct: 324 LHGAESDIVWLQQDFNLYIVNLFDTYHASKVLD--FPRHSLATLLEMYC-----DFTADK 376

Query: 525 KSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           +  +   +I     ++  +A  +++ +L ++  LR  L+         R   P  
Sbjct: 377 RYQLADWRIRPLPEEMLAYARSDTHFLLYIYDNLRNALLDRAQSRTQSRAQSPSA 431


>gi|297597041|ref|NP_001043365.2| Os01g0566900 [Oryza sativa Japonica Group]
 gi|52076246|dbj|BAD45014.1| egalitarian-like [Oryza sativa Japonica Group]
 gi|125526475|gb|EAY74589.1| hypothetical protein OsI_02478 [Oryza sativa Indica Group]
 gi|215712371|dbj|BAG94498.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673376|dbj|BAF05279.2| Os01g0566900 [Oryza sativa Japonica Group]
          Length = 307

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 69/191 (36%), Gaps = 17/191 (8%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           ++   ++ + I      +  D         + ++   +          KE++   K   E
Sbjct: 15  LEPSAAQKLVIGF--DCEGVDLCRHGALCIMQIAFPDAVYLVDAIEGGKELIEACKPALE 72

Query: 459 NEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDS---GRSSHD--------IA 506
           +E+  K+ H+ K D   L+ ++GI +    D  +   +L+     +  +D        +A
Sbjct: 73  SEYVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLLEEQEGKKRGYDEYISFVSLLA 132

Query: 507 SIAQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVE 563
                 ++Y  KE +++     P        S++   A  ++   +L +   +  KL   
Sbjct: 133 DPRYCGMAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSIHEKMMEKLSKV 192

Query: 564 KLLHVYERLDK 574
            L  +  R + 
Sbjct: 193 SLWRLSVRSEL 203


>gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51]
 gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51]
          Length = 377

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I + + + +  +  + +   +       +D F+ K   I I                 
Sbjct: 6   HWICDDQSLAEHCRDWQQLPFVAVDTEFMRVDTFYPKAGLIQI----------------- 48

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                   Q +   + L       L +  EN   +K+ H    D  VL R  G   +   
Sbjct: 49  -----GDGQRAFLIDPLLIGNWQPLAELLENSGVVKVLHACSEDLEVLLRLTGKLPQPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAGYLNLGFSM-GYSRLVQEVLGI---DLPKGETRSDWLQRPLSDTQVSYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   V E 
Sbjct: 160 HLAELFTVLRPRLSDDKYAWVLED 183


>gi|149237300|ref|XP_001524527.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146452062|gb|EDK46318.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1129

 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 15/181 (8%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            V+   + FGIP I     EA+   A    I   +G    I++ D D              
Sbjct: 871  VQELLKRFGIPFITAP-MEAEAQCAELLKIGLVDG----IVTDDSDCFLFGGDKVYKNMF 925

Query: 158  VKEEK---IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             +++       + +  K G+  + ++ L  L G   D   GI G+G   A  +L E+G+L
Sbjct: 926  NQKQFVECYFKDDIATKIGLSQDNLIELALLLG--SDYTEGIKGVGPVLAMEILAEFGSL 983

Query: 215  ENILINASRIKQKKRRENILEYAETARLSR----KLVMLRTDVPITIPLEHLILEDCNGP 270
                    R  +    ++ L   E   LS+    KL +   + P  I  E     + +  
Sbjct: 984  NKFKEWFDRHTKTAEVKSNLTSLEKNLLSKVKSGKLYLP-DNFPDRIVFEAYKRPEVDPD 1042

Query: 271  R 271
            +
Sbjct: 1043 K 1043


>gi|309808026|ref|ZP_07701945.1| hypothetical protein HMPREF9211_1445 [Lactobacillus iners LactinV
           01V1-a]
 gi|308168709|gb|EFO70808.1| hypothetical protein HMPREF9211_1445 [Lactobacillus iners LactinV
           01V1-a]
          Length = 102

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           + I    K       +    +  H     +V+ +L   + P+L   + LH+Y+ ++ P+ 
Sbjct: 8   EIIYGKGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIA 64

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            ++++MEI GI++    L ++  ++   +  L+  
Sbjct: 65  VILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNK 99


>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
          Length = 364

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 2   IINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  +KI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLKDLEFKKLKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        +AI++   
Sbjct: 100 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYAIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L   +    +E+
Sbjct: 156 LIQLKEYLQQQLAKSEYQDFFEQ 178


>gi|320158406|ref|YP_004190784.1| exonuclease [Vibrio vulnificus MO6-24/O]
 gi|319933718|gb|ADV88581.1| exonuclease [Vibrio vulnificus MO6-24/O]
          Length = 281

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 56/148 (37%), Gaps = 20/148 (13%)

Query: 67  YPAVTFRNEIYPDYKANRPK------IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120
                +R  I P YK+NR         P +L   L  +R          I+    EADD+
Sbjct: 67  SGDNNWRKVIMPSYKSNRESINMWISRPMILDYALQYIRD-----NYKFIQHDMLEADDL 121

Query: 121 IATYTYIAEKEGFAV-TIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           +  Y    E  G     I+S DKD   L S  T  Y   K+     + V +   +  ++ 
Sbjct: 122 MGIYATDPEWHGDDRKVIVSIDKD---LKSIPTWHYTPDKDFAPWEQSVEEADALYRKQW 178

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALL 207
                L GD  D   G  GIG KTA  L
Sbjct: 179 -----LMGDRTDGYEGCRGIGEKTAIDL 201


>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
 gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
          Length = 364

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 2   IINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  +KI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLKDLEFKKLKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        +AI++   
Sbjct: 100 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYAIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L   +    +E+
Sbjct: 156 LIQLKEYLQQQLAKSEYQDFFEQ 178


>gi|190889732|ref|YP_001976274.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|190695011|gb|ACE89096.1| ribonuclease III protein [Rhizobium etli CIAT 652]
          Length = 208

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G+ +    T  +     +   + +S  D   D                 + + G
Sbjct: 16  DAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADV---------------IRIAAG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +          L    E+    KI H  ++D  VL H +G++        + S +  +  
Sbjct: 61  QKEAPN-----LVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     +I K+++SS    +       E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKEMLDV---DISKTQQSSDWGAETLSPAQLEYAASDVLYLHALRDKLTARL 172

Query: 561 IVEK 564
           I + 
Sbjct: 173 IRDG 176


>gi|67610024|ref|XP_667077.1| flap endonuclease 1 [Cryptosporidium hominis TU502]
 gi|54658174|gb|EAL36849.1| flap endonuclease 1 [Cryptosporidium hominis]
          Length = 454

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 99/302 (32%), Gaps = 70/302 (23%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV-------TFRNEIYPDY 80
               G   + I G  +   +LL+   K         +FD           T R+E     
Sbjct: 20  TNSSGESTSHINGMLSRTTRLLEAGIKP------VFVFDGAPPEMKKDELTKRDERREKA 73

Query: 81  ----------------KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
                           K    +   +   Q+  V+      G+P I+    EA+   A  
Sbjct: 74  LAELEKAQEVGDEELIKKQSVRTIHVTKKQVEDVKKLLGFLGMPCIDAPS-EAEAQCAEL 132

Query: 125 TYIAEKEGFAVTIISTDKDLM---------QL--------VSPTTCLYDTVKEEKIDIEH 167
                 +G    +++ D D +         QL        +S  +        + I +  
Sbjct: 133 CK----DGLVYGVVTEDADSLTFGTPIQIKQLNFSESSNKISDKSPSKQKNGMQIIKLSL 188

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227
           ++ +  I  ++ + L  L+G   D    I GIG  TA  LL++Y N+E+IL N  + K  
Sbjct: 189 ILSELDINMDQFIDLCILSG--CDYCGTIRGIGTSTAYKLLKKYHNIESILKNIDQTKNP 246

Query: 228 KRRE----NILEYAETARLSRKLVMLRTDVPITIPLEHLI-LEDCNGPRLISFL-KALEF 281
                    + E  +   +S+              ++ LI   +     L+ +L K   F
Sbjct: 247 VPGNFDFSKVRELFKNPLVSK-----------NNQIKDLIKWSNPKYEELMEWLIKEQNF 295

Query: 282 TK 283
            +
Sbjct: 296 NE 297


>gi|315054289|ref|XP_003176519.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
 gi|311338365|gb|EFQ97567.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
          Length = 827

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 76/215 (35%), Gaps = 26/215 (12%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           +   ++ +     P+     T +   +D+Q+ + +L+     +  +              
Sbjct: 232 ESVYQKAEPTMYQPVEGTKATFVETLEDVQRMLAQLKQAKEIAVDLE------------- 278

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
                    D   +      + +S              ++ L  L + F +   +K+ H 
Sbjct: 279 -------HHDGHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQILNEVFADPSIVKVLHG 331

Query: 469 IKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
              D + L R  G+ + G  D    + VL        +  +  +++ +   +  K  +++
Sbjct: 332 SSMDVIWLQRDLGLYLVGLFDTFHAASVLQ--LPKKSLKFLLHEYVGF---DADKKYQTA 386

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
               +   + + ++A  +++ +L ++  LR +L+ 
Sbjct: 387 DWRIRPLLTGMLDYARSDTHFLLYIFDRLRNELLA 421


>gi|284162570|ref|YP_003401193.1| XPG I domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012567|gb|ADB58520.1| XPG I domain protein [Archaeoglobus profundus DSM 5631]
          Length = 335

 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 107/314 (34%), Gaps = 79/314 (25%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKESIASHF 61
           +D  + +Y+ F AT    R+ DG P         + ++G    +  +++   K       
Sbjct: 26  IDAFNTLYQ-FLAT---IRQPDGTPLMDSKGRITSHLSGILYRVSNMVEVGIKP------ 75

Query: 62  AVIFDYPAVTFRNEIYPDYKANRP------KIPEMLLPQLPLV--------------RLA 101
             +FD     F+ +     +  R       K    +                     +  
Sbjct: 76  IFVFDGEPPEFKKKEIERRRKIREEAEIKWKTALDIAEARKYAQQAVRVDEYIIESSKKL 135

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS------------ 149
               GIP ++    E +   A      + +       +  +D   L+             
Sbjct: 136 LNLMGIPIVQAPS-EGEAQAAYIVRKGDAD------YTGSQDYDSLLFGSPRLARNLAIT 188

Query: 150 -----PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
                P   +Y  VK E ID+E+ +KK GI  E+++ +  L G   D   G+ GIG K A
Sbjct: 189 GRRKLPGKNVYTEVKPEVIDLEYNLKKLGITREQLIDIALLVG--TDYNEGVEGIGVKKA 246

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
              ++ YG++  +L    ++K ++  E I                  + P+T   E +  
Sbjct: 247 YKYVKAYGDIFKVL-RVLKVKVEEPIEEIRN-------------FFLNPPVTDDYE-IKF 291

Query: 265 EDCNGPRLISFLKA 278
            + N   +I FL  
Sbjct: 292 REPNVDGIIEFLCE 305


>gi|221052642|ref|XP_002261044.1| flap exonuclease [Plasmodium knowlesi strain H]
 gi|317376188|sp|B3L014|FEN1_PLAKH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|194247048|emb|CAQ38232.1| flap exonuclease, putative [Plasmodium knowlesi strain H]
          Length = 595

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/446 (15%), Positives = 136/446 (30%), Gaps = 68/446 (15%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             +  +D S  +Y+   A              G   + I+G  +   KL++N  K     
Sbjct: 28  GRVVAIDASMSLYQFIIAIRDSEQYGNLTNESGETTSHISGLMSRSIKLMENGLK---PI 84

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLP-----------------------QLP 96
           +   +FD      +          R K  E+L                         Q  
Sbjct: 85  Y---VFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTKKQNE 141

Query: 97  LVRLATQAFGIPAIEIQGFEADDII---------ATYTYIAEKEGFAVTIISTDKDLMQL 147
             +      GIP +E                   AT T  A+   F   I+  + +    
Sbjct: 142 EAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAS 201

Query: 148 VSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
            +      ++ K      +I++E V+K   +   + +    L G   D    I GIG KT
Sbjct: 202 STSQNKNKNSSKRGYILTEINLEQVLKGLNLNMNEFIDFCILCG--CDYCDTIKGIGSKT 259

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENIL--EYAETARLSRKLVMLRTDVPITIPLEH 261
           A  L++EY ++E I+ N  + K  +   N    E  ++  ++ K+        ++     
Sbjct: 260 AYNLIKEYNSIEKIIENIDKNK-YQIPSNFRFVEARDS-FINPKV--------LSKEEIK 309

Query: 262 LILEDCNGPRLISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIA 315
           +   +     L +F         +  T  INR+                    T+     
Sbjct: 310 IDWGEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKV-TTQRRLDNFFTACTKKSTKL 368

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
           +  E      +K  +     D  +  +++   ++    + +K S+   ++       + +
Sbjct: 369 VNEESQIKKEVKPKRKGKKRDAPNDSSTKLNSKQNKKPKGEKESKTEKDDGDTHNGNDNE 428

Query: 376 DIQQWVQKLETIGSASFKIITDTMDA 401
           +     +  +      F    D  + 
Sbjct: 429 EEGGEGETADMGAKDPFDTEEDEDNP 454


>gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
 gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
          Length = 1432

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 72/200 (36%), Gaps = 22/200 (11%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K    +  +D  +   +  T     ++ L       I++ +   ++N  ++         
Sbjct: 359 KAIAITDHADVQAFPEAYHTGASEKMKILYGYEANMIDDHAL-LVLNPTEMD-----YRD 412

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLS------VHTSQD 438
                F + T  + + +   I I    +   +  +   +       LS         + +
Sbjct: 413 HEYVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDE 472

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIMLM 492
             G     K+++   K F+ +      GHN+++D       L R G+    +   D + +
Sbjct: 473 MVGAADDEKDVIKKFKDFYGD--RPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 530

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           S +L   ++ H + S+A+K+
Sbjct: 531 SRLLHPEQTRHTLDSLAKKY 550


>gi|114568663|ref|YP_755343.1| 3'-5' exonuclease [Maricaulis maris MCS10]
 gi|114339125|gb|ABI64405.1| 3'-5' exonuclease [Maricaulis maris MCS10]
          Length = 204

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
                ++     +    T  +         + +S  D  D    ++     D        
Sbjct: 9   DLPADIDLGPIVAVDTETLGLSLTRDMLCVVQLSAGDG-DAHVVQMNRADYDCPN----- 62

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLD 497
                         LK+   +    KI H  ++D  ++ +Y G++M       + S ++ 
Sbjct: 63  --------------LKRVLADPAVEKILHFARFDVAMVDKYLGVTMAPVFCTKIASKLVR 108

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLL 556
           +    H +  + ++ +     E+ K ++SS    D++S +Q+ ++A  +   + +L   L
Sbjct: 109 TYTDRHGLKDVTRELVG---AEMNKQQQSSDWGADELSPAQL-DYAASDVLHLHKLREKL 164

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              L  E    + +      +   +++++ G  
Sbjct: 165 GMMLEREGRTDLAKAC-FDFLPTRAKLDLAGWP 196


>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella tularensis subsp. novicida U112]
 gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
 gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
 gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
 gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
 gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
          Length = 364

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 2   IINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  +KI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLEDLEFKKLKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        +AI++   
Sbjct: 100 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYAIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L   +    +E+
Sbjct: 156 LIQLKEYLQQQLAKSEYQDFFEQ 178


>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
          Length = 399

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 28  IINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 73

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  LKI H+   D  ++ R +   +    D
Sbjct: 74  --------EIFLIDTLKDLEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFD 125

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        +AI++   
Sbjct: 126 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYAIKDVEY 181

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L   +    +E+
Sbjct: 182 LIQLKEYLQQQLAKSEYQDFFEQ 204


>gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583]
          Length = 206

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 24/170 (14%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            + +    T  +     +   + +S+ D   D                 Q + G+N+   
Sbjct: 20  DAVAIDTETLGLQPHRDRLCVVQLSSGDGTAD---------------IIQIAKGQNSAPN 64

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                L K   ++   KI H  ++D  +L   +GI         + S +  +    H + 
Sbjct: 65  -----LVKLLADKAITKIFHFGRFDLAILAHTFGIMPDAVFCTKIASKLTRTYTDRHGLK 119

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            I  + L+     I K ++SS    +       E+A  +   + +L  + 
Sbjct: 120 EICSELLNVN---ISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKSVF 166


>gi|154278361|ref|XP_001539994.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413579|gb|EDN08962.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 807

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 111/321 (34%), Gaps = 22/321 (6%)

Query: 255 ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGI 314
           + +  E L   D         +K L  ++    V       +AN  P V D   ++    
Sbjct: 90  VDVIDELLEKADACLDEFTGIIKRLSPSQAERDVVLGKKTASANF-PSVYDFGPSKIPKP 148

Query: 315 AIETEIDRDTTIKTSQFSSL------SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
            +      +     + F  L      +      ++ +T     +   +   +  I N +Y
Sbjct: 149 QLLFNSRPNNKDDGTPFRPLLRTKPHAITPLSTSASETSPNGTITSYKHPYETEIRNSTY 208

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP---IAIAISTLDQKDDTSFKVE 425
              V T  +       ET  +     + + + +  ++      IAI  L+  D  S+   
Sbjct: 209 PSSVYTISVPGKFAPFETTTATFVDTL-EGIHSMLAELKEVTEIAI-DLEHHDAHSYHGL 266

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
              + LS              +E L  L + F +   LK+ H    D + L R  G+ + 
Sbjct: 267 VCLMQLSTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIV 326

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHA 542
           G  D    +  L+       +  + +K++++  +     +K  I   ++      + ++A
Sbjct: 327 GLFDTYHAAVALN--YPKKSLKFLLEKFVNFQAE-----KKYQIADWRLRPLLPGMFDYA 379

Query: 543 IENSNVILQLWLLLRPKLIVE 563
             +++ +L ++  +R  LI  
Sbjct: 380 RSDTHYLLYIYDHIRNDLIEH 400


>gi|118596596|dbj|BAF37957.1| flap endonuclease-1 [Thermoplasma sp. S01]
          Length = 336

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 103/321 (32%), Gaps = 83/321 (25%)

Query: 10  VDGSSFIY------RAFYATPLLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFA 62
           +D  + +Y      R +   PL+     G   + + G F   +  L    R         
Sbjct: 26  IDTYNILYQLLSNVRQYDGMPLM--DSHGNVTSHLYGIFYRTINLLENKIRPVY------ 77

Query: 63  VIFDYPAV-------TFRNEIYPDYK------ANRPKIPEMLLPQLPLV----------- 98
            +FD           + R  +    K        R +  E L      +           
Sbjct: 78  -VFDGKPSPLKNRTISERQLMKEKAKVELEEAIERGE--EDLRQYYSRINYITPQIVNDT 134

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS--------- 149
           +      GIP ++       +  A+Y      +G    +IS D D +   +         
Sbjct: 135 KKLLDYMGIPYVDAP--SEGEAQASYMTRKNVDG----VISQDYDCLLFGARKVLRNFAI 188

Query: 150 ------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
                 P   +Y TV  E I ++ V+    I  ++++ +  L G   D   GI GIG K 
Sbjct: 189 YGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVG--TDFNEGIKGIGAKK 246

Query: 204 AALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           A  L+++ G+++ +L         K  EN+ E  +             + P+        
Sbjct: 247 ALALIKKEGDIKAVLRRI-----GKDIENLDEIID----------FFKNPPVVDY--DFR 289

Query: 264 LEDCNGPRLISFL-KALEFTK 283
               +   +  FL    +F++
Sbjct: 290 FGKPDTDAIEHFLCDEHDFSR 310


>gi|159118360|ref|XP_001709399.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
 gi|317374902|sp|A8B672|FEN1_GIAIC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|157437515|gb|EDO81725.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
          Length = 361

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 18/190 (9%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
                  GIP +   G EA+            EG    + S+D D++   SP        
Sbjct: 143 ERLLDTLGIPYVVAAG-EAEAQCVAMAKERVCEG----VASSDLDVLAFGSPCLIRNLAQ 197

Query: 159 KEEK----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             ++    I++  V+K+ G   ++ + L  L G   D    + GIG KTA  L+ ++ ++
Sbjct: 198 GGDREIVEINLNTVLKELGFSYDEFLDLCILCG--CDYANSLEGIGPKTAYKLIVKHRSI 255

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274
           E +L       Q K  E  L +      +R+L      +      + L  +  N    + 
Sbjct: 256 EEVLAA----DQGKLAEKALNWP--YVRARELFKNPAVIDPKEIKKTLKWKPVNRGEAMQ 309

Query: 275 FL-KALEFTK 283
           FL + +EF +
Sbjct: 310 FLVEEMEFDR 319


>gi|332029311|gb|EGI69294.1| DNA polymerase subunit gamma-1, mitochondrial [Acromyrmex echinatior]
          Length = 1247

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 91/324 (28%), Gaps = 90/324 (27%)

Query: 676  QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735
            + +K    Y   +P  +   T           T +        N     I ++L   +  
Sbjct: 847  KRTKRYMRYGAIIPQVVVSGTLTRRAVEPTWMTAS--------NAHVERIGSELRCMV-- 896

Query: 736  AFISPPTKKLISADYSQIELRIL-----AHIAKITP--------LYQVFENSLDIHRMVA 782
               +PP   ++ AD    EL I      AH  ++          L     N  D+H + A
Sbjct: 897  --QAPPGYNIVGADVDSQELWIASIIGDAHYKRVHGATPFGWMTLIGTKSNGTDMHSVTA 954

Query: 783  AEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---PFRLATQLRIPRSEAADYIK--RYFH 837
              I            R HAK IN++ IYG       RL  Q     ++A    K  + F 
Sbjct: 955  KAI---------GISRDHAKVINYARIYGAGQKFAQRLLKQFNPSMTDAEATSKSRKMFD 1005

Query: 838  RFPGIHEYI-----------------EKTKNFVRQNG----------------------- 857
               G   +                   +     + +G                       
Sbjct: 1006 LTKGKKVFWLKPEFVNDDLQDIAYTSSQAYKIAKLHGKALQDIFLKSEWMGGSESAMFNR 1065

Query: 858  --------YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909
                    Y  T F        +    +   +      IN  +Q  A D     ++S+  
Sbjct: 1066 LEQIAGSEYPVTPFLDARLSRALEITNTDDDDKFLPTKINWVVQSGAVDFLHLMLVSMRW 1125

Query: 910  SLEDHKLATKMLLQIHDELVFEVP 933
             + D     +  L  HDE+ + +P
Sbjct: 1126 LMRD---NARFCLSFHDEVRYLIP 1146


>gi|222147114|ref|YP_002548071.1| ribonuclease D [Agrobacterium vitis S4]
 gi|221734104|gb|ACM35067.1| ribonuclease D [Agrobacterium vitis S4]
          Length = 208

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                  + +    T  +     +   + +S  D   D                 + + G
Sbjct: 16  DAARYTRAIAIDTETLGLIPRRDRLCVVQLSPGDGTADV---------------IRIAPG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +          L    E+    KI H  ++D  VL H +G++        + S +  +  
Sbjct: 61  QRQAPN-----LTALLEDPTREKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     ++ K+++SS    +       E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKEMLDV---DVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARL 172

Query: 561 IVEK 564
           + + 
Sbjct: 173 VRDG 176


>gi|158291195|ref|XP_312669.4| AGAP002300-PA [Anopheles gambiae str. PEST]
 gi|157018260|gb|EAA07463.4| AGAP002300-PA [Anopheles gambiae str. PEST]
          Length = 969

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 76/230 (33%), Gaps = 33/230 (14%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P K   ER       P+       +     + + V++L+     +  +            
Sbjct: 247 PAKHVFERTTPQEPVPLERTPLMYVDQESQLAELVRELQAAKEIAIDLE----------- 295

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
                         S++  T  + LS  T +D        ++ L  L + F +   LK+ 
Sbjct: 296 ---------HHSYRSYQGFTCLMQLSTRT-KDYIVDALALRDELHVLNEVFTDPKKLKVL 345

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D   L R  G+ +    D    + VL    S   +  + + + +         + 
Sbjct: 346 HGSVSDIEWLQRDLGLYLVNMFDTGEAARVLQ--FSRIGLQFLLKHYCNIDTD-----KA 398

Query: 526 SSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYER 571
             +   +I        E+A ++++ +L ++  +R +L+   E LL     
Sbjct: 399 FQLADWRIRPIPENFIEYARKDTHYLLYIYDRMRNELLEKGESLLQTVYD 448


>gi|156539953|ref|XP_001602202.1| PREDICTED: similar to AT02241p, partial [Nasonia vitripennis]
          Length = 1031

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 128/405 (31%), Gaps = 95/405 (23%)

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDIL--FTKLKFPSGAKTKTGQWKTTAQDLEQI 660
              + +    +   +G  FN+ SP    D L  F+K    S   T T +    ++     
Sbjct: 560 DNKIENFFFKLPHKNGILFNVGSPLS-KDFLNNFSKNILDSIT-TSTSRIIEISKMSSYW 617

Query: 661 NCGDNPIIKNILEWRQL-----SKIKSTYADS---LPNHINKRTQRVHTFYSLASTMTGR 712
               + I+  ++ W        SK  + Y +    +P  I   T           T +  
Sbjct: 618 KNNRDRILSQLVIWLDSKQNVNSKNSTNYINFGAIIPQVIVSGTLTRRAVEPTWMTAS-- 675

Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772
                 N     I ++L   I     +P    +I AD    EL I + I         F+
Sbjct: 676 ------NAHCERIGSELRGIIN----APSGYSIIGADVDSQELWIASII------GDAFK 719

Query: 773 NSLDIH--------RMVAAEIFGVNIEKVSPQ----MRRHAKTINFSIIYGIS---PFRL 817
             + IH         ++  +  G ++  V+ +     R  AK +N++ IYG       RL
Sbjct: 720 KDIKIHGSTPFSWMTLIGNKSDGTDMHSVTAKAIGINRDQAKVLNYARIYGAGQKFAERL 779

Query: 818 ATQLR--IPRSEAA------DYIKRYFHRFPGIHEYI---------------------EK 848
             Q    I   EAA        + +    +    +Y+                     +K
Sbjct: 780 LKQFNPSITDKEAALKSKHIYLMTKGKKYYRLKKQYVSENLSNKLYTSYEAFKISQIHKK 839

Query: 849 TKNFVRQNGY-------------VETIFGRRIHYDEINSPKSSIRNINER-----AAINA 890
            ++ V + G               E           +N   S      +        IN 
Sbjct: 840 LRDEVFEKGKWIGGSESVMFNSLEEIAEQNEPSTPFLNCRLSRALEYEKNEKFLPTKINW 899

Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +Q  A D     ++++   ++D     ++ L  HDE+ + VP E
Sbjct: 900 VVQSGAVDFLHLILVTMRWLMKD---KARLCLSFHDEVRYLVPSE 941


>gi|32128449|ref|NP_858984.1| 5'-exonuclease similar to N-terminal domains of DNA polymerase I
           [Xanthomonas phage Xp10]
 gi|31788512|gb|AAP58704.1| 36L [Xanthomonas phage Xp10]
          Length = 309

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 24/245 (9%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA 69
           VDG      A+Y     S   D  P  A     +M+ + +Q +  +    H +       
Sbjct: 35  VDGDYL---AYY----CSGNDDTSPSEAKRASVDMIKRGMQAAGADRAIVHLSASNCTKG 87

Query: 70  VTFR----NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF---EADDIIA 122
             F     ++    Y+  R    +        +R   + +  P  +++ +   EADD IA
Sbjct: 88  HRFVIAACSQTSKPYQGQRKSGQKP--ANWENLREWLEGYDGPLFKVKIWTDREADDGIA 145

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178
             T  A K G    ++S DKD                  +     D     K++G    K
Sbjct: 146 YCTEAAYKLGRPGAVMSADKDFRMFAGVHVVWRTLQVVEITPGTYDQMFAGKQYG---HK 202

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY-A 237
              LQ + GD  DNI G+PG G   A   L    + ++ +     + +++ +E    +  
Sbjct: 203 FFWLQMIMGDQADNIVGLPGCGEVAAEKTLNGTSSNQDAMAAVVALYKQRMKELWAPHFV 262

Query: 238 ETARL 242
           E A L
Sbjct: 263 EQASL 267


>gi|298707038|emb|CBJ29840.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 1907

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 15/221 (6%)

Query: 420  TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
             +  V   +  L V      T +    +  L  L+   E ++  K+  ++K   + L   
Sbjct: 1677 QALLVCRRWNALGVEALNRLTAEEPSGRWGL--LRDVMEEKNTTKVCLDMKGSLVCLRSL 1734

Query: 480  GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI----- 533
            G++++G  ED  +  ++ +         +  Q+      K   K RK+ +P  +      
Sbjct: 1735 GVNVKGPLEDPAVARWLAEPPIED---TAQLQQQQQQQLKRASKKRKTPLPPPRAPPASL 1791

Query: 534  ----SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
                    V +     +   L         L    L   +  L+ P +   + ME +G+ 
Sbjct: 1792 ALARPPVDVVDLWCLQAAATLSFMAEKEQALKDLSLTLPFFLLEMPAVSAAALMEYSGLT 1851

Query: 590  IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630
            +   L+     E+   L  LE     L+G+   LSSP  + 
Sbjct: 1852 LKVGLVVGARREVELRLDDLERLAEQLAGDYEGLSSPLMVS 1892


>gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus]
 gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus]
 gi|296479174|gb|DAA21289.1| exosome component 10 [Bos taurus]
          Length = 702

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 ++      +  +    +          TP    L++ +     P+       + 
Sbjct: 233 VPPALADLIHQQRTQQVEQDMFAHPYQYELDHFTPPDSVLQKPEPQLYRPVGETPCHFVS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
              ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 TLDELVELNEKLLKCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + S     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCS-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L     +     + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDKMRLELWERGNEQPTQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 504 TQQLTAFQL 512


>gi|149244804|ref|XP_001526945.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449339|gb|EDK43595.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 826

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 115/326 (35%), Gaps = 19/326 (5%)

Query: 259 LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET 318
            E L  E     RL S  +  E   L + V ++   +  +       ++       + E 
Sbjct: 97  FEKLDHEFDQKKRLQSAYREHEKQYLEDGVTSSGTLEQRSHRITKPQLSFKTPIDNSEEE 156

Query: 319 EIDRDTTIKTSQFSSLSDQTSKINSE----QTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
                   K +   SL   +  +N E     + + +     +   +Y I+   Y   V  
Sbjct: 157 PFKPKLRTKPNALQSLELVSQLVNPEPVYEDSVEVVDPPFYRHPYEYEIDKQPYPSAVLE 216

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA-IST-LDQKDDTSFKVETIFIDLS 432
           K      Q+     +       + +DA   +  A + I+  L+  D  S+      + +S
Sbjct: 217 KSTPIQPQEWTKTEAIWVDNE-EQLDAMIEELKAASEIAVDLEHHDYRSYYGLVCLMQIS 275

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
            +  +D        ++ LS L   F N   +K+ H    D + L R  G+ +    D   
Sbjct: 276 -NREKDWVIDTLALRDELSKLNVIFTNHEIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYH 334

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            S  L         A  + ++L  T      S+K  +   +I    + +  +A  +++ +
Sbjct: 335 ASRQL-------GFAKFSLQYLLDTFAHFRTSKKYQLADWRIRPLPAPMLAYARSDTHFL 387

Query: 550 LQLWLLLRPKL-IVEKLLHVYERLDK 574
           L ++  LR KL   +KL  V   L +
Sbjct: 388 LYIYDQLRNKLIDQDKLSKVLFELRQ 413


>gi|126179869|ref|YP_001047834.1| flap endonuclease-1 [Methanoculleus marisnigri JR1]
 gi|166973702|sp|A3CWV2|FEN_METMJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|125862663|gb|ABN57852.1| flap endonuclease 1 [Methanoculleus marisnigri JR1]
          Length = 333

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 63/251 (25%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKESIASHF 61
           +D  +    A Y    + R+ DG P         + ++G   +L++ +    K       
Sbjct: 27  LDAHN----ALYQFLSIIRQPDGTPLMNGAGRITSHLSG---ILFRTVNFLEKGIRP--- 76

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPE---------MLLPQLPLV-------------- 98
             +FD     F+ E   + + +R +  E          +                     
Sbjct: 77  VFVFDGKPPEFKQETINERREHRARADEAWKTALREGDMEEAYKQASASARIDSHTIASS 136

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           R      GIP ++    E +   A         G     +S D D +   SP      TV
Sbjct: 137 RELLDLLGIPWVQAPS-EGEAQAAYMARQ----GKVTYAVSQDYDSLLFGSPVLVRNLTV 191

Query: 159 KE-------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
                          E+I +   + + G+  E++V +  L G   D  PGI G+G KTA 
Sbjct: 192 SGRRKTRGRTITVNPERIVLSSFLDRLGVTREQLVKIGILVG--TDFNPGIRGVGGKTAL 249

Query: 206 LLLQ--EYGNL 214
            +++  E+ ++
Sbjct: 250 KIVRNGEFESV 260


>gi|91088803|ref|XP_968984.1| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
          Length = 377

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 129/385 (33%), Gaps = 47/385 (12%)

Query: 326 IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385
           ++  +      QT+++ +                Q    +  Y  ++N +   + + ++E
Sbjct: 1   MEKEESQQAEVQTAEVTTCNEESVKKFCDADIAGQDSCESHPYKHLLNFEPTVEQLSRVE 60

Query: 386 TIGSASFKIIT--------DTMDAFHSKP-----IAIAISTLDQKDDTSFKVETIFIDLS 432
            I +      T         +++   +       + + +   D        +  I     
Sbjct: 61  NIEAPKTLKETPLCDIDTKTSLEELITDLKAWKELGVDVEYSDHGYKALTCLVQISTP-- 118

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
               +D        K+ L  L + F N   +KI H+   D   L +  G+ +    D  +
Sbjct: 119 ---DKDYIIDAIALKDELHALNEVFTNPDIVKIFHSAVNDLKWLQQDLGVFVVNLFDTQI 175

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
               L  G     + ++ Q +  +  K+  K+ +      +    + +++A  +S+ ++ 
Sbjct: 176 AMKAL--GYKKLGLDALLQDY--HVAKD--KTMQRQDFRRRPLPPKFKDYARVDSHYLIG 229

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611
            +  L+ +LI   LL            ++          D+  L          +    E
Sbjct: 230 FYHKLKNELIEANLLRAVLDDCNNCCKILYPKVE-----DEAYLS---------VRRNVE 275

Query: 612 NIYD---LSGEKFNLSSPKQLGDILFTKLKF---PSGAKTKTGQWKTTAQDLEQINCGDN 665
            I+    L  EK N     Q+   L   +      S  +T   Q  + + D+ QI+   +
Sbjct: 276 EIHKRQLLVLEKLNSW-RHQIAQYLDKNVGCVLSKSNMETLVLQMPSDSADIMQISQSSH 334

Query: 666 PIIKNILEWRQLSKIKSTYADSLPN 690
            + +++ E  Q+    +   ++LP 
Sbjct: 335 -VKEHLDEVMQILSEGNPVRNTLPQ 358


>gi|29838472|gb|AAO93094.1| DNA polymerase [Bacillus phage Bastille]
          Length = 279

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 98/291 (33%), Gaps = 43/291 (14%)

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L S  ++  +A I   +  +  + +    K    I+         +    + V  +    
Sbjct: 2   LASRCTNKGLAKIEALYTGHYPELVNVLAK----IEATGIKLDIPYVKHLAKVYTEEENR 57

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615
           L   +    L+   E  +K  +  ++  E+     D+D          K +L L   + D
Sbjct: 58  LLGLIREFNLIKQVEE-EKDALYALAVEEMLKAPKDRD----------KEILKLRNKLKD 106

Query: 616 LSGEKFNLSSP--KQLGDILFTKLKFPSGAKT-----KTGQWKTTAQDLEQINCGDN--- 665
                FN +S   KQ        +  P   +           +    +        +   
Sbjct: 107 EEDRFFNPNSSEDKQKAMYKLGGIVLPFNREYLVDSAVENNLEEHEIEWYHYKADKHAFE 166

Query: 666 ----------PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715
                      +    LE+  +   K ++       ++     +H  ++   T T RL+S
Sbjct: 167 YISENYPEHKELADLFLEFSLVKTRKQSFTYKFLTMVD-HHDILHGSFNSEGTETSRLSS 225

Query: 716 LEPNLQNIPI------KTDLGQKIRRAFISP-PTKKLISADYSQIELRILA 759
             PNLQN+P       + D    I+RAF++      LI  DYS +E R++A
Sbjct: 226 AAPNLQNLPRKTGDVFRFDYQHPIKRAFVTRFEGGALIQLDYSSLESRVMA 276


>gi|255647529|gb|ACU24228.1| unknown [Glycine max]
          Length = 345

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 62/176 (35%), Gaps = 17/176 (9%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + I    +  D   K     + L+   +          +E++   K   E+ +  K+ H+
Sbjct: 60  LVIGFDCEGVDLCRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHD 119

Query: 469 IKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIAS--------IAQ-KWLSYTRK 518
            K D   L+ ++GI +    D  +   +++       +          +A  ++   +  
Sbjct: 120 CKRDSEALYFQFGIKLNNAVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGISYD 179

Query: 519 E------ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           E      +L+          +S  Q+   A ++   +L ++  +  KL    L ++
Sbjct: 180 EKEEVRVLLRQDPKFWTHRPLS-EQMIRAAADDVRFLLYIYRQMMEKLNERSLWYL 234


>gi|194100334|ref|YP_002003764.1| gp6 [Enterobacteria phage EcoDS1]
 gi|193201329|gb|ACF15808.1| gp6 [Enterobacteria phage EcoDS1]
          Length = 288

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 72/217 (33%), Gaps = 18/217 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPV------NAIAGFCNMLWKLLQNSRK 54
           M  +    ++DG   ++ +  A    +   D +         A     N + ++++  RK
Sbjct: 1   MSDKKIALVLDGDYLVFSSMAAAEDETDWGDDIYTLICDHAKARRILENTIAEIVKK-RK 59

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
               +   + F    V +R  I P YKANR    + +      V          +     
Sbjct: 60  AWKDAKIVMCF-TDDVNWRKSILPTYKANRKGSRKPVGY-KKFVAEVMADPRFNSFLRPT 117

Query: 115 FEADDIIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            E DD +       +  G     ++S DKD   +  P    +     E +        + 
Sbjct: 118 LEGDDCMGIIGTRPQIVGCDHAVLVSCDKDFKTI--PNCEFFWLTTGEILSHTTAEADY- 174

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
                    Q + GDS D   GIPG+G  T    L E
Sbjct: 175 -----WHMEQTIKGDSTDGYGGIPGMGEDTTRAFLDE 206


>gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
 gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
          Length = 209

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 51/178 (28%), Gaps = 26/178 (14%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           + +    T  ++    +   + +S  D   D                             
Sbjct: 24  AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDPAP------------------ 65

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               L     +   +KI H  ++D  VL   +G+         + S +  +    H +  
Sbjct: 66  --ERLMAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEK 564
           + ++ +       L  ++ S      + SQ Q ++A  +   +      L   L  E 
Sbjct: 124 VVRELVGVD----LSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREG 177


>gi|104783019|ref|YP_609517.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
 gi|95112006|emb|CAK16733.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
          Length = 377

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 38/230 (16%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH--SKPIAIAISTLDQKDDTSFKVET 426
             I + + + +  Q+   +   +       +D F+  +  + I                 
Sbjct: 6   HWIRDDQTLAEHCQRWRKLPFVALDTEFMRVDTFYPKAGLVQIG---------------- 49

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG 485
                       +   + L       L    ++   +K+ H    D  VL R  G   + 
Sbjct: 50  --------DGNQAFLIDPLLISDWQPLADLLDDSGVVKVLHACSEDLEVLLRLTGKLPQP 101

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  L +  L+ G S    + + Q+ L     E+ K    S  + +        +A E+
Sbjct: 102 LFDTQLAAGYLNIGFSM-GYSRLVQEVLGL---ELPKGETRSDWLQRPLSETQVSYAAED 157

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595
           +  + +L+  LRP+L  +K   V +       ++V+ +      +D + L
Sbjct: 158 AVHLAELFSALRPRLSDDKFAWVLDD----GAELVAALRRE---VDPETL 200


>gi|269959116|ref|YP_003328905.1| ribonuclease D [Anaplasma centrale str. Israel]
 gi|269848947|gb|ACZ49591.1| ribonuclease D [Anaplasma centrale str. Israel]
          Length = 389

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 121/347 (34%), Gaps = 73/347 (21%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASI 508
           LS L++ F++E   K+ H+ + D   L +  + + +   D    S + +   +S   + +
Sbjct: 68  LSPLQEIFDDEGICKVFHDCRQDLDALSQRFLRLPKPIFDTQTASMLCEYHDNSVGYSKL 127

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            +++L     ++L  R        +S+ +V  +A+++   + +L+ +L   L+ +  L  
Sbjct: 128 VEQFLGVKLNKLLFKRV-DWSHRPLSEGKV-RYALDDVTYLHELYGVLLDILVAKGRLTW 185

Query: 569 YERLDKPMIDVVSQMEITGIQIDQ-----------DLLKQVSAEISKNLLSLEENIYDLS 617
           +   +   I         G  +D              L +  A ++++++   E I  L 
Sbjct: 186 FRE-EMAGI--------AGASVDNYDSLLEGMDFFSELGEAEAIVARSIIEWREKIARLF 236

Query: 618 GEKFNL--SSPKQL-----------GDILFTKL------KFPSGAKTKTGQWKTTAQDLE 658
               N+  +S   L            ++L+  +        P                + 
Sbjct: 237 NVNRNIVMNSKSVLCATQAFLRNRDEEVLYKYVSGSYLDNLPFSLCDILESSSGRKLGVY 296

Query: 659 QINCGDNPIIKNIL--------EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710
           ++   D PI+  +L        E     K+ ++  + L   INK    V   +       
Sbjct: 297 KLVNHDKPILSALLVLLNSMCKEHAISQKLVASKVE-LVKLINKIPSNVMRGW------- 348

Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                          + +        FI+  T+ + S D S  ++R+
Sbjct: 349 ---------------RYEFFGCKVEKFIAGETRLIFSVDNSDGQMRL 380


>gi|117920828|ref|YP_870020.1| ribonuclease D [Shewanella sp. ANA-3]
 gi|117613160|gb|ABK48614.1| ribonuclease D [Shewanella sp. ANA-3]
          Length = 388

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 82/264 (31%), Gaps = 30/264 (11%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +   N   +  + +   +   V + +                +++K   I       
Sbjct: 12  NPQELEKNLSVFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLI------- 64

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 K   +   +++                LS      +N + +K+ H+   D  V 
Sbjct: 65  -QAYDGKTLALIDPVALPD--------------LSAFWSLLDNPNIIKLVHSCSEDLEVF 109

Query: 477 HRYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             YG        D  + + +   G   H +     K +     E++   +S     +   
Sbjct: 110 AHYGQRQPTPLFDSQIAASLCGMG---HGLGY--AKLVETCLGEVIDKGESRTDWMRRPL 164

Query: 536 SQVQ-EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           ++ Q  +A  +   + QL+  L  KL   ++L  +YE  ++     ++  ++    +   
Sbjct: 165 TEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEEGERMTEGRLATPDMDTAYLRVK 224

Query: 594 LLKQVSAEISKNLLSLEENIYDLS 617
              Q++      L  L +   + +
Sbjct: 225 NAFQLTEHQLAYLKVLAKWRLEKA 248


>gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis]
          Length = 1092

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 10/154 (6%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L+     SF+     + LS  +         L   +   L   F +   +K+ H    D 
Sbjct: 274 LEAHSYRSFQGFCCLMQLSTRSEDLVIDTLALRAHVGPALAPIFADPGVVKVLHGADSDV 333

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
             L R +G+ +    D    + VL  G   H +A +   +  +        ++  +   +
Sbjct: 334 AWLQRDFGLFLANLFDTGQAARVL--GMRGHGLAHLLDFYCGFKAD-----KRFQLADWR 386

Query: 533 ISD--SQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +     ++  +A  +++ +L  +  L+  L    
Sbjct: 387 VRPLTPEMLHYARSDTHHLLYCYDKLKAALAEAG 420


>gi|229589039|ref|YP_002871158.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
 gi|229360905|emb|CAY47765.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
          Length = 377

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 68/204 (33%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + Q   + + +   +       +D F+  PIA  I   D             
Sbjct: 6   HWICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFY--PIAGLIQIGDGVRAYLI------ 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + LT +    L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLTIDNWQPLAALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q  L     E+ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQAVLDI---ELPKGETRSDWLQRPLSETQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +++  LRP+L  EK   V + 
Sbjct: 160 HLAEVYTRLRPRLSDEKYAWVLDD 183


>gi|198477405|ref|XP_002136633.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
 gi|317374893|sp|B5DUR8|FEN1_DROPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|198142925|gb|EDY71637.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
          Length = 386

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 82/279 (29%), Gaps = 54/279 (19%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      ++         R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGKPPDLKSGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +      G+P ++    EA+   A   
Sbjct: 109 KALKAATDAGDDAEIEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPC-EAEAQCAALV 167

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
                 G      + D D +   S     Y T  E      ++   + +++   +   + 
Sbjct: 168 K----AGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREF 223

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L G   D    I GIG K A  L+  Y ++E IL N    K     EN       
Sbjct: 224 IDLCILLG--CDYCESIKGIGPKRAIELINNYRDIETILDNLDTSK-YTVPENW------ 274

Query: 240 ARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
              + K+       P         L   + +   L+ FL
Sbjct: 275 ---NYKVARELFIEPEVADASAIDLKWTEPDEEGLVKFL 310


>gi|113970513|ref|YP_734306.1| ribonuclease D [Shewanella sp. MR-4]
 gi|113885197|gb|ABI39249.1| ribonuclease D [Shewanella sp. MR-4]
          Length = 384

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 30/221 (13%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +   N   +  + +   +   V + +                +++K   I       
Sbjct: 8   NPQELEKNLSVFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLI------- 60

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 K   +   +++                LS      +N + +K+ H+   D  V 
Sbjct: 61  -QAYDGKTLALIDPVALPD--------------LSAFWSLLDNPNIIKLVHSCSEDLEVF 105

Query: 477 HRYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             YG        D  + + +   G   H +     K +     E++   +S     +   
Sbjct: 106 AHYGQRQPTPLFDSQIAASLCGMG---HGLGY--AKLVETCLGEVIDKGESRTDWMRRPL 160

Query: 536 SQVQ-EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDK 574
           ++ Q  +A  +   + QL+  L  KL   ++L  +YE  ++
Sbjct: 161 TEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEEGER 201


>gi|223986450|ref|ZP_03636454.1| hypothetical protein HOLDEFILI_03766 [Holdemania filiformis DSM
           12042]
 gi|223961602|gb|EEF66110.1| hypothetical protein HOLDEFILI_03766 [Holdemania filiformis DSM
           12042]
          Length = 171

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 67/161 (41%), Gaps = 29/161 (18%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDT-----------MDAFHSKPIAIAISTLD 415
           +Y  + +   I+++   L+ +   +F   T +           +DA     ++++ ST +
Sbjct: 3   NYRTLTDLPSIKRY---LQGVTPVAFDFETTSDAAYRTEPKAALDAHKLHIVSVSFSTTE 59

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK-KFFENEHFLKIGHNIKYDKL 474
                    +   + L     ++   ++    E+ ++LK + FEN + +KI HN+ ++ +
Sbjct: 60  G--------DASNVPLLHRIGENCEKQD----ELWTFLKTEVFENPNIVKIAHNLSFEAM 107

Query: 475 VLHRYGISMR-GFEDIMLMSYV-LDSGRSSHDIASIAQKWL 513
            L+   I ++    D +  S + L S      + +   K L
Sbjct: 108 FLYAKNIIVQMPCYDTIAASQLPLKSKCEFRGLHASCLKLL 148


>gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
 gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
          Length = 481

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 104/311 (33%), Gaps = 33/311 (10%)

Query: 216 NILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP-RLIS 274
           N++  A ++ ++   E + E  ETAR    L  L T++P+   L +   E      +   
Sbjct: 120 NVMDRAGQVARET--ERLRE--ETAR----LTALLTEIPLATILVNPAHEIVLYDSQAAE 171

Query: 275 FLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334
           FL  +   +L   +A  +D D+       LD   +E      +    R   ++     + 
Sbjct: 172 FLSQIAPPRLKAPLADYFDADSLAAAQARLDKTKSECTATLADVSGRRVVEVRFKPLDAG 231

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
           +     I   +T     L     +  + + N   T  ++   +             +F  
Sbjct: 232 AYML--ILDAKTASVDRLAARPLVYDFGLLNVIRTTAIDDAPLSSLC-------FVAFDT 282

Query: 395 ITDTMDAFHSKPIAIAI-------STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            T  + A     + +             +  DT           S    + + G      
Sbjct: 283 ETTGLSAQTDDVVQLGAVRVLNGRVVPGETLDTYVNPGRPIPPASTEIHRVTDGHVRGAS 342

Query: 448 EILSYLKKF--FENEHFLKIGHNIKYDKLVLHRY----GIS-MRGFEDIMLMSYVLDSGR 500
           + ++  + F  F  +  L + HN  +D   LHR+    G+       D +L+S V+    
Sbjct: 343 DFVTVGRNFHHFARDAVL-VAHNAPFDLAFLHRFADRMGVEWTHPVLDTVLLSAVVFGTT 401

Query: 501 SSHDIASIAQK 511
             H + ++  +
Sbjct: 402 EQHSLDALCDR 412


>gi|114047748|ref|YP_738298.1| ribonuclease D [Shewanella sp. MR-7]
 gi|113889190|gb|ABI43241.1| ribonuclease D [Shewanella sp. MR-7]
          Length = 384

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 30/221 (13%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
              +   N   +  + +   +   V + +                +++K   I       
Sbjct: 8   NPQELEKNLSVFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLI------- 60

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                 K   +   +++                LS      +N + +K+ H+   D  V 
Sbjct: 61  -QAYDGKTLALIDPVALPD--------------LSAFWSLLDNPNIIKLVHSCSEDLEVF 105

Query: 477 HRYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             YG        D  + + +   G   H +     K +     E++   +S     +   
Sbjct: 106 AHYGQRQPTPLFDSQIAASLCGMG---HGLGY--AKLVETCLGEVIDKGESRTDWMRRPL 160

Query: 536 SQVQ-EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDK 574
           ++ Q  +A  +   + QL+  L  KL   ++L  +YE  ++
Sbjct: 161 TEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEEGER 201


>gi|242057747|ref|XP_002458019.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
 gi|241929994|gb|EES03139.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
          Length = 340

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           ++   ++ + I      +  D         + L+   +          KE++   K   E
Sbjct: 44  LEPSAAQKLVIGF--DCEGVDLCRNGALCIMQLAFPDAVYLVDAIEGGKELIQACKPALE 101

Query: 459 NEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDS------GRSSHDIASIA-- 509
           ++H  K+ H+ K D   L+ ++GI +    D  +   ++         ++S D   I+  
Sbjct: 102 SDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIQEQEQEGKKKTSDDYNYISFV 161

Query: 510 -----QKWLSYTRKE------ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
                +++      E      +L+   +   I  +SD  V+  A ++   +L ++  +  
Sbjct: 162 SLLADKRFCGIPYPEKEEVRTLLRQDPNFWTIRPLSDMMVRA-ATDDVRFLLNIYEKMME 220

Query: 559 KLIVEKLLHVYERLDK 574
           KL    L  +  R + 
Sbjct: 221 KLSKVSLWRLAVRSEL 236


>gi|312959586|ref|ZP_07774103.1| ribonuclease D [Pseudomonas fluorescens WH6]
 gi|311286303|gb|EFQ64867.1| ribonuclease D [Pseudomonas fluorescens WH6]
          Length = 377

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 68/204 (33%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + Q   + + +   +       +D F+  PIA  I   D             
Sbjct: 6   HWICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFY--PIAGLIQIGDGVRAYLI------ 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + LT +    L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLTIDNWQPLAALLENPSVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q  L     ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQAVLDI---DLPKGETRSDWLQRPLSETQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +++  LRPKL  +K   V E 
Sbjct: 160 HLAEVYTRLRPKLSDDKYAWVLED 183


>gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
 gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
          Length = 352

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 96/270 (35%), Gaps = 38/270 (14%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   + +Q     L            D++  +  K   I IS            + +  
Sbjct: 4   LIDTAEALQAVPPLLAPHPRIPIDTEADSLHCYFEKLCLIQISVPGH--------DLLID 55

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLHRYGISM-RGFE 487
            L+  +                 L+  FE       I H   YD  +L R G ++     
Sbjct: 56  PLAGIS-----------------LQPLFEAFAGKELIIHGADYDLRLLRRVGFTVTAPVF 98

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D M+ + +   G     +A++ +++       + K+ + +    +    Q+ ++A+++++
Sbjct: 99  DTMIAARLC--GIEEFSLAALIKRYFDVA---LTKASQKANWARRPLSPQMADYAVKDTH 153

Query: 548 VILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI-----DQDLLKQVSAE 601
            +L++  +L  +L  ++++    +  DK +       E    ++      +DL  + SA 
Sbjct: 154 YLLEIAGILEAELTRLDRMEWFRQSCDKAVAASAITKERDPEEVWRITGSKDLRGRASAI 213

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
           +       E     +    F++   +QL +
Sbjct: 214 LRALWHWREAEAQAVDRPTFHILHSEQLIE 243


>gi|194882401|ref|XP_001975300.1| GG22240 [Drosophila erecta]
 gi|317374889|sp|B3NP61|FEN1_DROER RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|190658487|gb|EDV55700.1| GG22240 [Drosophila erecta]
          Length = 387

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 83/279 (29%), Gaps = 54/279 (19%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      ++         R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGKPPDLKSGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +      G+P ++    EA+   A   
Sbjct: 109 KALKAATDAGDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPC-EAEAQCAALV 167

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
                 G      + D D +   S     Y T  E      ++   + +++   I   + 
Sbjct: 168 K----AGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLSINSREF 223

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L G   D    I GIG K A  L+  Y ++E IL N    K     EN       
Sbjct: 224 IDLCILLG--CDYCESIKGIGPKRAIELINNYRDIETILDNLDSSK-YTVPENW------ 274

Query: 240 ARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
              + K+       P     E   L   + +   L+ FL
Sbjct: 275 ---NYKVARELFIEPEVANAESIDLKWVEPDEEGLVKFL 310


>gi|73668744|ref|YP_304759.1| flap endonuclease-1 [Methanosarcina barkeri str. Fusaro]
 gi|121723542|sp|Q46D63|FEN_METBF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|72395906|gb|AAZ70179.1| flap endonuclease 1 [Methanosarcina barkeri str. Fusaro]
          Length = 338

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 103/318 (32%), Gaps = 79/318 (24%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKES 56
           N +  +D  + +    +    + R+ DG P         + ++G       L++   K  
Sbjct: 21  NQVVAIDAFNTL----HQFLSIIRQRDGNPLVNSRGKVTSHLSGLLYRTASLIEVGIKP- 75

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRP---------KIPEMLLPQLPLVRL------- 100
                  IFD      ++E     K  R          K+   L       +        
Sbjct: 76  -----VFIFDGKPPDLKSETLNRRKEVRESSLEKWENAKVEGDLEAAYKYAQASSKVDQE 130

Query: 101 -------ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT- 152
                       GIP I+    E +   A   ++  K+     + S D D     +PT  
Sbjct: 131 IVEDSKYLLSIMGIPWIQAPC-EGE---AQAAHMVLKKDAD-YVASQDYDSFLFGAPTVI 185

Query: 153 -------CLYDTVKEEKIDIEHVIKK-------WGIPPEKMVCLQALTGDSIDNIPGIPG 198
                        K   +D+E  + +        GI  E+++ +    G   D   G+  
Sbjct: 186 RNLAVTGKRKLPGKHVYVDVELELIELEETLGVLGINREQLIDIAICVG--TDFNKGLEK 243

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258
           +G KTA  L++++G++  +L           RE  +E  E  R+ R+L       P    
Sbjct: 244 VGPKTALKLIKKHGDIHAVL-----------REKGVEIKELDRI-RELFTH----PDVTD 287

Query: 259 LEHLILEDCNGPRLISFL 276
              +     +  +LI FL
Sbjct: 288 DYEIKWGKPDSEKLIKFL 305


>gi|74612809|sp|Q76F73|FEN1_COPCI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|46092541|dbj|BAD14303.1| flap endonuclease-1 [Coprinopsis cinerea]
          Length = 458

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   +   +P +     EA+   A         G  V    S D D +   +P    + 
Sbjct: 142 CQKLLRLMSVPCVIAPS-EAEAQCAELAR-----GGKVYAAGSEDMDTLTFNAPILFRHL 195

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E       +I++E  +K   +   + V L  L G   D +  I G+G K+A  L++E
Sbjct: 196 TFSEAKKQPISEINLEAALKGLDMDMSQFVDLCILLG--CDYLEPIKGVGPKSALKLIRE 253

Query: 211 YGNLENILINA 221
           +G L+ ++ + 
Sbjct: 254 FGGLKEVVEHL 264


>gi|331019018|gb|EGH99074.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 377

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F                   + +  + 
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTF-------------------YPIAAL- 45

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
             L +   Q +   + L     + L    EN   +K+ H    D  VL R  G       
Sbjct: 46  --LQIGDGQSAWLIDPLLINDWAPLSALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L+    ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLNI---DLPKGETRSDWLQRPLSDTQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFAILRPRLSDDKYAWLLDD 183


>gi|302415937|ref|XP_003005800.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
 gi|261355216|gb|EEY17644.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
          Length = 1209

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 106/314 (33%), Gaps = 42/314 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FGIP I     EA+   A    +   +G    I++ 
Sbjct: 860  KKDRRDADEVTQVMVGECQALLRLFGIPYITAP-MEAEAQCAELVRLGLVDG----IVTD 914

Query: 141  DKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D                 + ++      + K+  +  E++V +  L G   D   G+P
Sbjct: 915  DSDTFLFGGTRVYKNMFNSNKLVECYLSSDLDKELSLSREQLVSIALLLG--SDYTDGLP 972

Query: 198  GIGYKTAALLLQEY----GNLENILINASRIKQKKRRENILEYAETARLSR----KLVML 249
            G+G  TA  +L E+    G L       + ++ ++R +   + A  A   +    ++  L
Sbjct: 973  GVGPVTAVEILSEFPESEGGLAAFCHWWADVQGQRRPK--EDDAPNAFRRKFRKSQVAKL 1030

Query: 250  RTDV--------------PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
               V               +    E       N   L  +        L+  +  + +  
Sbjct: 1031 FLPVGFPNPAVREAYMKPEVDDSPETFQWGVPNLEGLRQY--------LMATIGWSEERT 1082

Query: 296  AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               + PV+ D+N  + +G         +  + T    S + +  +  S++  + +   R 
Sbjct: 1083 DEVLVPVIRDMNRRDVEGTQSNITRYFEGGVGTGAKESFAPRQKQKASKRMAEAVNKLRN 1142

Query: 356  QKLSQYPINNDSYT 369
               S    +  + T
Sbjct: 1143 TGASVSESSPTTDT 1156


>gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 362

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 112/349 (32%), Gaps = 43/349 (12%)

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
           IT+   A+      +  +     +  S    T    +                   S L+
Sbjct: 18  ITNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIP------------------SRLR 59

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRG----FEDIMLMSYVLDSGRSSHDIASIAQ 510
           K   +   L   HN  +D+ VL      +      + D M+ + +  S   +  +A++ +
Sbjct: 60  KAIADPDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQA-LAHSLPGA--LAALCE 116

Query: 511 KWLSYTRKEILKSRKS--SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
                  K   K  KS   +       +     A   ++ I     +    L +E +  V
Sbjct: 117 VLGVPQDKAKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREV 176

Query: 569 YERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
           Y+RL        +  +     Q+   G  +D DL+      + +    L E   +++  +
Sbjct: 177 YKRLPKWNYQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGE 236

Query: 621 FNLSSPKQ-LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR-QLS 678
              ++ +  +   +            K+   +  A           P +K +L  R Q S
Sbjct: 237 VQAATQRDAMIKHIVESYGVELPDMQKSTIERRIADPDLP------PAVKELLHIRLQAS 290

Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
              ++   +L   ++   +   T     ++ TGR A      QN+  ++
Sbjct: 291 ATSTSKYKTLLKSVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRES 339


>gi|150401914|ref|YP_001325680.1| flap endonuclease-1 [Methanococcus aeolicus Nankai-3]
 gi|166973699|sp|A6UX46|FEN_META3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|150014617|gb|ABR57068.1| XPG I [Methanococcus aeolicus Nankai-3]
          Length = 326

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 65/189 (34%), Gaps = 38/189 (20%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I+                  K G A  ++S D D +   +P T    T
Sbjct: 135 CKKLLKLMGIPYIDAPSEGEAQCAHMI-----KNGDAYCVVSQDYDALLYGAPRTVRNIT 189

Query: 158 VKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
                 E ++IE ++K   I  + ++ +  L G    NI GI GIG K A  +       
Sbjct: 190 ASNKPLELMEIEDILKPLDISIDDLIDMAILIGTDY-NIGGIKGIGPKKALTI------- 241

Query: 215 ENILINASRIKQKKRRENIL-----EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
                    IK KK  E I      E  +    + K+V            E + L+  N 
Sbjct: 242 ---------IKNKKMNEYIKDIENYEEIKNIFKNPKVV--------DYTKEDIKLKSPNI 284

Query: 270 PRLISFLKA 278
             L  FL  
Sbjct: 285 EGLKEFLIE 293


>gi|82704983|ref|XP_726779.1| structure-specific endonuclease [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482332|gb|EAA18344.1| structure-specific endonuclease of the XPG/RAD2 family [Plasmodium
           yoelii yoelii]
          Length = 390

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 61/143 (42%), Gaps = 20/143 (13%)

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            ++S D D +   +P    + T K+++  I+ + ++ +  I  E+ +    L+G   D  
Sbjct: 262 IVVSDDTDALAFGAPNLIRFITNKKKRHIINKDEILNELDINYEQFIDFCILSG--CDYS 319

Query: 194 PGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
             IPGIG   A  ++++Y  +E  L +++  K    +          R ++KL       
Sbjct: 320 AKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYSNTK----------RFNQKL------S 363

Query: 254 PITIPLEHLILEDCNGPRLISFL 276
            +++ L+  IL +    +     
Sbjct: 364 DVSMSLKDYILNEFTYEQARKIF 386


>gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1]
 gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1]
          Length = 389

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 31/213 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +V+    Q+  + L T G  +  +  D+M AF ++     +      D   F      +D
Sbjct: 11  VVDASSAQEAARTLATAGELAVDLEADSMHAFRARL--CFLQVATPTDIFLFDTLAPGVD 68

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490
            S+                   L     +    K  H  + D   L   GI +RG  D  
Sbjct: 69  ASL-------------------LAPLMADPERTKYFHAAQGDLQFLAEAGIRVRGLFDTH 109

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
             + +L  G     +A IA++ L     E+ K  + S    +    +++E+   +   + 
Sbjct: 110 RAATLL--GWPKVGLADIARERLGV---ELPKEHQQSDFSLRPLPPEMREYIANDVRYLC 164

Query: 551 QLWLLLRPK-----LIVEKLLHVYERLDKPMID 578
           +L   +R       ++ E LL      ++ +  
Sbjct: 165 ELGRQVREACRTAGILEEVLLDCDRMCEEAVAR 197


>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
 gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
          Length = 1437

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 34/194 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET--------IFIDLSVHT 435
           L+      F + T  +       I    + +     T               F   S H 
Sbjct: 402 LKEEEYVVFDLETTGLSPRLDDIIEFGATIVKNNTITQKIQFFLQTKRELSAFTVESSHI 461

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMRGFE--DI 489
           + +        +E +  + +  +++  + + HN  +D         + G+        D 
Sbjct: 462 NNEMLKNGYAQEEGIKKIYEILKDK--IAVAHNANFDINFCKEKFSKLGLDNSKIFGLDT 519

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + +SY L+     H +  +A++                   + I D+ V      ++NV+
Sbjct: 520 LALSYFLNPDEFRHSLGYVAKR------------------FNIIYDTTVAHRGDYDANVL 561

Query: 550 LQLWLLLRPKLIVE 563
            ++W+ +  KL  +
Sbjct: 562 AKIWIKMIDKLAKD 575


>gi|195155221|ref|XP_002018504.1| GL16728 [Drosophila persimilis]
 gi|317374892|sp|B4GIM3|FEN1_DROPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|194114300|gb|EDW36343.1| GL16728 [Drosophila persimilis]
          Length = 386

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 82/279 (29%), Gaps = 54/279 (19%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      ++         R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGKPPDLKSGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +      G+P ++    EA+   A   
Sbjct: 109 KALKAATDAGDDAEIEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPC-EAEAQCAALV 167

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
                 G      + D D +   S     Y T  E      ++   + +++   +   + 
Sbjct: 168 K----AGKVYATATEDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREF 223

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239
           + L  L G   D    I GIG K A  L+  Y ++E IL N    K     EN       
Sbjct: 224 IDLCILLG--CDYCESIKGIGPKRAIELINNYRDIETILDNLDTSK-YTVPENW------ 274

Query: 240 ARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
              + K+       P         L   + +   L+ FL
Sbjct: 275 ---NYKVARELFIEPEVADASAIDLKWTEPDEEGLVKFL 310


>gi|82621130|gb|ABB86253.1| 3'-5' exonuclease domain-containing protein-like [Solanum
           tuberosum]
          Length = 338

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 62/179 (34%), Gaps = 17/179 (9%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + I    +  D         + L+   +          + ++   K   E+ +  K+ H+
Sbjct: 54  LVIGFDCEGVDLCRHGTLCIMQLAFPDAIYLVDAVQGGEAVVQACKPALESNYITKVIHD 113

Query: 469 IKYDKLVLH-RYGISMRGFEDIMLMSYVLD--------SGRSSHDIASIAQ-KWLSYTRK 518
            K D   L+ ++GI +    D  +   +++               +  +A  ++   +  
Sbjct: 114 CKRDSEALYFQFGIKLHNVVDTQIAYSLINEQEGHARVPDCHISFVGLLADPRYCGVSYD 173

Query: 519 E------ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           E      +L+          +S  Q+   A ++   +L ++  +  KL  + L ++  R
Sbjct: 174 EKEEVRVLLRQDPKYWTYRPLS-EQMIRAAADDVRFLLHIYHKMVQKLNDKSLWNLAVR 231


>gi|289804042|ref|ZP_06534671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 43

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           FEV ++++   ++ I   ME        + VPL V +    NW + +
Sbjct: 1   FEVHKDDLDAVAKRIHQLMENCT----RIDVPLLVEVGSGENWDQAH 43


>gi|170099279|ref|XP_001880858.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644383|gb|EDR08633.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1137

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 73  RNEIYPDY---KANRPKI---PEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           R EI  +       R       E +  Q+   +    + FGIP I     EA+   A   
Sbjct: 714 RREIDVEIETLHQQRKAAMRDSEDITQQMITQIMTMLRLFGIPYITAP-MEAEAQCAELV 772

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
            +   +G    II+ D D+               +   E   +  + +  G+  + ++ L
Sbjct: 773 TLKLVDG----IITDDSDVFLFGGQRVYKNMFNQSKTVEGFALADLTRDLGLDQDALIRL 828

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
             L G   D + G+PG+G   A  LLQE+   + + 
Sbjct: 829 AYLLG--SDYVEGLPGVGPVVAMELLQEFPGKDGLY 862


>gi|328852744|gb|EGG01887.1| hypothetical protein MELLADRAFT_110505 [Melampsora larici-populina
           98AG31]
          Length = 385

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 23/201 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT-IISTDKDLMQLVSPTTCLYD 156
            R      GIP +     EA+   A         G  V    S D D +   +P    + 
Sbjct: 142 CRRLLTLMGIPWVIAPS-EAEAQCAELCK-----GGLVYGAGSEDMDTLTFGTPLLLRHL 195

Query: 157 TVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E +      +++  V+    +  E+ +    L G   D +  + G+  KTA  L++E
Sbjct: 196 TFSEARKVPINTVNLSKVLAGLDLTMERFIDFCILCG--CDYVDPLKGVAAKTALKLIKE 253

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
           +G+LE ++ +     Q+  +    E    A  +++L  ++ DV  +  +  L     +  
Sbjct: 254 HGSLEAVVDHL----QQTGKNPPPEDWPWAE-AKEL-FVKPDVIKSEDI-KLEWNMPDVD 306

Query: 271 RLISFL-KALEFTKLINRVAT 290
            L+ FL K   F +   R  T
Sbjct: 307 GLVEFLVKEKGFDEERVRKGT 327


>gi|323145815|gb|ADX32056.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146001|gb|ADX32241.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 885

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 88/291 (30%), Gaps = 61/291 (20%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQI 753
              R+ T        T R    +       + +  G  +R  F     K   I  D+  +
Sbjct: 502 EDGRIATPADSCGAGTSRFKHKQV-ANIPRVTSLYGVPMRNLFGVDTNKCWQIGYDFDSL 560

Query: 754 ELRILAHIA-------------------------KITPLYQVFENSL---------DIHR 779
           E +I AH                                 Q  +            DIH 
Sbjct: 561 EAKIEAHYCLSTAMRLSPAAAQKLKIKFGSNFAKYREACIQAAQEYAVALVAEKPNDIHT 620

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + AA+I  +     S   R +AK++ +   YG    R+A  +     EA      ++   
Sbjct: 621 VTAAKISTIIGGDFS---RTNAKSVKYGCSYGAQVARVAKIVGCSMQEAQAIFDAFWEAA 677

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +        +F ++ G        +     I+  +   R+  E A +N+  Q +    
Sbjct: 678 SPLALLKTVLTDFWKEKG-------NKKFIVGIDGRQIPTRS--EHALVNSLFQSAGVIC 728

Query: 900 TRRAMISVHKSLEDHKLA-------------TKMLLQIHDELVFEVPEEEI 937
            + AMI   + L    L               + L+  HDE   EV ++ +
Sbjct: 729 AKVAMIMHDQKLMAEGLLVDFWKDDWKNKSYCQQLIAYHDESQLEVTKDLV 779



 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 89/274 (32%), Gaps = 62/274 (22%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
             F I    +               +   D +     +  D  +H    +  ++  T E+
Sbjct: 9   VVFDIEATGL-------------IGEGTVDYTASPWRLKEDFKLHC---AVARDIDTDEV 52

Query: 450 LSY-------LKKFFENEHFLKIGHNI-KYDKLVLH-RYGIS-----------MRG---- 485
             +         K+   E  + IGHNI  YD L L    G+            + G    
Sbjct: 53  FKWGPDEVMDFAKWLGEECSVVIGHNIINYDLLALKLTCGLEYTIGWGETKDTINGNPVK 112

Query: 486 FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS-------- 536
             D +++S  L+  R   H I +   K L   + +    R  ++ +  I+++        
Sbjct: 113 IVDTLVISKTLNPDRRPGHGIGAWGDK-LGLAKID---WRAKAVELGLITENAPRGAEFK 168

Query: 537 ----QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
               ++ E+ + + +V L ++  L  +           + +  +  VV++    G   D 
Sbjct: 169 TYHPEMLEYNVRDVDVNLLVYKALMAEWGAWN-WAPAVQTESYVAWVVTRQSHRGFFFD- 226

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
              ++++    + L  L E    +         P
Sbjct: 227 ---ERLAQANVRELDQLMEECRAIVEPILPPKKP 257


>gi|317374947|sp|A8NQC2|FEN1_COPC7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
          Length = 458

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 15/131 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   +  G+P +     EA+   A         G  V    S D D +   +P    + 
Sbjct: 142 CQKLLRLMGVPCVIAPS-EAEAQCAELAR-----GGKVYAAGSEDMDTLTFNAPILFRHL 195

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E       +I++E  +K   +   + V L  L G   D +  I G+G K+A  L++E
Sbjct: 196 TFSEAKKQPISEINLEAALKGLDMDMSQFVDLCILLG--CDYLEPIKGVGPKSALKLIRE 253

Query: 211 YGNLENILINA 221
           +G L+ ++ + 
Sbjct: 254 FGGLKEVVEHL 264


>gi|84662631|ref|YP_453596.1| putative DNA polymerase I [Xanthomonas phage OP1]
 gi|84570680|dbj|BAE72743.1| putative DNA polymerase I [Xanthomonas oryzae phage OP1]
          Length = 309

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 88/245 (35%), Gaps = 24/245 (9%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA 69
           VDG      A+Y     S   D  P  A     +M+ + +Q +  +    H +       
Sbjct: 35  VDGDYL---AYY----CSGNDDTSPSEAKRASVDMIQRGMQAAGADRSIVHLSASNCTKG 87

Query: 70  VTFRNE----IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF---EADDIIA 122
             F           Y+  R    +        +R   + +  P  +++ +   EADD IA
Sbjct: 88  HRFVIAAGSLTSKPYQGQRKSGQKP--ANWEHLREWLEGYDGPLFKVKIWTDREADDGIA 145

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178
             T  A   G    ++S DKD                  VK    D     K++G    K
Sbjct: 146 YCTEAAYTLGRPGAVMSADKDFRMFAGVHVVWRTLQVVEVKPGTYDQMFAGKQYG---HK 202

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY-A 237
              LQ + GD  DNI G+PG G   A   L +  + ++ +     + +K+ RE   ++  
Sbjct: 203 FFWLQMIMGDQADNIVGLPGCGEVAAEKTLHDTTSNQDAMTAVVALYKKRMRELWAQHFV 262

Query: 238 ETARL 242
           E A L
Sbjct: 263 EQASL 267


>gi|299743075|ref|XP_001835524.2| flap endonuclease-1 [Coprinopsis cinerea okayama7#130]
 gi|298405488|gb|EAU86309.2| flap endonuclease-1 [Coprinopsis cinerea okayama7#130]
          Length = 422

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 15/131 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   +  G+P +     EA+   A         G  V    S D D +   +P    + 
Sbjct: 106 CQKLLRLMGVPCVIAPS-EAEAQCAELAR-----GGKVYAAGSEDMDTLTFNAPILFRHL 159

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E       +I++E  +K   +   + V L  L G   D +  I G+G K+A  L++E
Sbjct: 160 TFSEAKKQPISEINLEAALKGLDMDMSQFVDLCILLG--CDYLEPIKGVGPKSALKLIRE 217

Query: 211 YGNLENILINA 221
           +G L+ ++ + 
Sbjct: 218 FGGLKEVVEHL 228


>gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
 gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
          Length = 1389

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 72/200 (36%), Gaps = 22/200 (11%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K    +  +D  +   +  T     ++ L       I++ +   ++N  ++         
Sbjct: 316 KAIAITDHADVQAFPEAYHTGASEKMKILYGYEANMIDDHAL-LVLNPTEMD-----YRD 369

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLS------VHTSQD 438
                F + T  + + +   I I    +   +  +   +       LS         + +
Sbjct: 370 REYVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDE 429

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIMLM 492
             G     K+++   K F+ +      GHN+++D       L R G+    +   D + +
Sbjct: 430 MVGAADDEKDVIKKFKDFYGD--RPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 487

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           S +L   ++ H + S+A+K+
Sbjct: 488 SRLLHPEQTRHTLDSLAKKY 507


>gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 731

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 27/234 (11%)

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A      V D+          E E  R            + Q     S          R 
Sbjct: 455 AETSPLSVRDVADRHGGEFWFERERVRHQAFFRFLLPLAAPQEQLDASRLMSAMHAEGRP 514

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS-KPIAIAIS-- 412
           +              +++        ++L  +    F   T  ++     + I I  +  
Sbjct: 515 EFYDFDLFKRLEQHHVLDE-------RRLVDLAYTVFDTETTGLNPSDGDEIIQIGATRI 567

Query: 413 ---------TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                    + +Q  D    +    I +      D          +L     F ++   +
Sbjct: 568 SGGKLRRQESFEQLVDPQRPIPPAGIPI-HGIKPDMVAGQPTIDHVLPAFHAFAQD--TV 624

Query: 464 KIGHNIKYDKLVLH----RYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
            + HN  +D   L     R G+   +   D +L+S V+   + SH + +IA+++
Sbjct: 625 LVAHNAAFDMRFLQLKQDRTGLVFDQPVLDTLLLSAVVHPNQESHRLEAIAERF 678


>gi|28871074|ref|NP_793693.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28854324|gb|AAO57388.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 377

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F+     IA         +++ +    
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYP----IAALLQIGDGQSAWLI---- 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + L     + L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLLINDWAPLSALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L+    ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLNI---DLPKGETRSDWLQRPLSDTQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFAILRPRLSDDKYAWLLDD 183


>gi|320202935|ref|NP_001188509.1| flap endonuclease-1 [Bombyx mori]
 gi|268044461|gb|ACY92094.1| flap endonuclease-1 [Bombyx mori]
          Length = 380

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 21/191 (10%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
             +    +   +  G+P ++    EA+   A         G      + D D +   +P 
Sbjct: 135 KQRSEEAKQLLKLMGVPVVDAPC-EAEAQCAALVK----SGKVFAAATEDMDALTFGAPV 189

Query: 152 TCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
              + T  E      ++  + +V++   +   + + L  L G   D    I G+G K A 
Sbjct: 190 LLRHLTFSEARKMPVQEFHLNNVLQGLELKQNEFIDLCILLG--CDYCGSIRGVGPKRAI 247

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
            L++++  L+ +L N    K +   +   E A +  +  ++   + D+        L   
Sbjct: 248 DLIRQHRTLDEVLKNIDTEKYQPPTDWDYERARSLFMEPEVADPK-DI-------ELKWT 299

Query: 266 DCNGPRLISFL 276
           D +   L+ FL
Sbjct: 300 DPDEEGLVKFL 310


>gi|294658624|ref|XP_460967.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
 gi|317374925|sp|Q6BLF4|FEN1_DEBHA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|202953266|emb|CAG89325.2| DEHA2F13882p [Debaryomyces hansenii]
          Length = 379

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 21/193 (10%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSP 150
             Q    +   +  G+P +     EA+   A         G  V    S D D +    P
Sbjct: 136 REQNDEAKKLLELMGVPYVNAPC-EAEAQCAELAR-----GGKVFAAASEDMDTICYQPP 189

Query: 151 TTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
               + T  E +      I  E V++   +  E  + L  L G   D    I G+G  TA
Sbjct: 190 FLLRHLTFSEARKMPIDQIQYEKVLEALEMDRETFIDLCILLG--CDYCETIRGVGPVTA 247

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEY-AETARLSRKLVMLRTDVPITIPLEHLI 263
             L++E+G+L+ I+   +    K   +   ++  + A   RKL        I     +L 
Sbjct: 248 FKLIKEHGSLDKIVEYLTNNPDKTNFKVPEDWPYDEA---RKL--FINPDTIDASEVNLK 302

Query: 264 LEDCNGPRLISFL 276
            ++ +   LI ++
Sbjct: 303 WKEPDVEGLIQYM 315


>gi|226491678|ref|NP_001141141.1| hypothetical protein LOC100273227 [Zea mays]
 gi|194702850|gb|ACF85509.1| unknown [Zea mays]
          Length = 339

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           ++   ++ + I      +  D         + L+   +          KE++   K   E
Sbjct: 43  LEPSAAQKLVIGF--DCEGVDLCRNGALCIMQLAFPDAVYLVDAIEGGKELIQACKPALE 100

Query: 459 NEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGR------SSHDIASIA-- 509
           ++H  K+ H+ K D   L+ ++GI +    D  +   +++         +S D   I+  
Sbjct: 101 SDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIEEQEQEGKKMTSDDYNYISFV 160

Query: 510 -----QKWLSYTRKE------ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
                +++      E      +L+   +   I  +SD  V+  A ++   +L ++  +  
Sbjct: 161 SLLADKRYCGILYPEKEEVRTLLRQDPNFWTIRPLSDMMVRA-ATDDVRFLLSIYAKMME 219

Query: 559 KLIVEKLLHVYERLDK 574
           KL    L  +  R + 
Sbjct: 220 KLSKVSLWRLAVRSEL 235


>gi|167035116|ref|YP_001670347.1| ribonuclease D [Pseudomonas putida GB-1]
 gi|166861604|gb|ABZ00012.1| ribonuclease D [Pseudomonas putida GB-1]
          Length = 377

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I + + + +  +    +   +       +D F+ K   I I                 
Sbjct: 6   HWIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQI----------------- 48

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                   Q +   + L       L    E+   +K+ H    D  VL R  G   +   
Sbjct: 49  -----GDGQRAFLIDPLLIGDWQPLADLLEDSGVVKVLHACSEDLEVLLRLTGKLPQPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q  L     E+ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAGYLNLGFSM-GYSRLVQDVLGI---ELPKGETRSDWLQRPLSETQVSYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+  LRP+L  +K   V E 
Sbjct: 160 HLAELFTELRPRLSDDKYTWVLED 183


>gi|213969693|ref|ZP_03397828.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
 gi|301383544|ref|ZP_07231962.1| ribonuclease D [Pseudomonas syringae pv. tomato Max13]
 gi|302062110|ref|ZP_07253651.1| ribonuclease D [Pseudomonas syringae pv. tomato K40]
 gi|302130100|ref|ZP_07256090.1| ribonuclease D [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213925501|gb|EEB59061.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
          Length = 377

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F+     IA         +++ +    
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYP----IAALLQIGDGQSAWLI---- 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + L     + L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLLINDWAPLSALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L+    ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLNI---DLPKGETRSDWLQRPLSDTQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFAILRPRLSDDKYAWLLDD 183


>gi|171687395|ref|XP_001908638.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943659|emb|CAP69311.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1280

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 37/256 (14%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FG+P I     EA+   A    +   +G    I++ 
Sbjct: 892  KKDRRDADEVTQVMVTECQALLRLFGVPYITAP-MEAEAQCAELVRLNLVDG----IVTD 946

Query: 141  DKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D                 + ++   +  +  +  +  E+++ L  L G   D   GIP
Sbjct: 947  DSDTFLFGGTRVYKNMFNSNKFVECYLLRDLEDELELSREQLIALAQLLG--SDYTEGIP 1004

Query: 198  GIGYKTAALLLQEYGNLENILI---NASRIKQKKRRENILEYAETARLSRKLVMLRTDVP 254
            GIG  TA  +L E+   E +         ++  KR +     +   R  RK    +  +P
Sbjct: 1005 GIGPVTAVEILSEFPGREGLSDFKTWWEDVQSGKRPKEADASSPFRRKFRKGQATKLFLP 1064

Query: 255  ITIP----------------LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298
            +  P                 E       +   L  F        L++ +  + +     
Sbjct: 1065 LGFPSPAVFDAYLHPEVDSSQEQFQWGVPDLEGLRQF--------LMSTIGWSKERTDEV 1116

Query: 299  IEPVVLDINTTENKGI 314
            + PV+ D+N  E +G 
Sbjct: 1117 LVPVIRDVNRREAEGT 1132


>gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246]
          Length = 203

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 60/190 (31%), Gaps = 34/190 (17%)

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI-GSASFKIIT 396
            ++   + TP+   +E    +S+ P    +     +   +++    L+   G  +    T
Sbjct: 2   AARAADDPTPRPENVEPAPVVSERPAPFPT----ADAAGVREIADALQGWAGPVAVDTET 57

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
             +D    +   I ++    +D     V      ++                    L+  
Sbjct: 58  TGLDPARDRVRLIQVA--AGQDVALIDVFAFADPVAD-------------------LRPL 96

Query: 457 FEN-EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-------SHDIASI 508
           F       ++GHN+++D   L  +        D +L S V  +G          H +   
Sbjct: 97  FAALADKEQVGHNLQFDLRFLAPFEFVPGKVFDTILASRVRHAGDRAESNGRFRHGLGDA 156

Query: 509 AQKWLSYTRK 518
           A + L  +  
Sbjct: 157 AARELGRSLD 166


>gi|242011128|ref|XP_002426307.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510384|gb|EEB13569.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 737

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 31/219 (14%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P +  L     +S   +    +  I   ++I   ++ LE     +  +   +  +F    
Sbjct: 229 PLESQLLSQPPISYKTLEETPFHLITKPEEIDPMIENLEKCKEIAIDLEHHSYRSFQGFT 288

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             + IST D                      D        +  L  L K F N + +K+ 
Sbjct: 289 CLLQISTRDT---------------------DYVIDTIALRSKLEGLNKIFTNPNIVKVF 327

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D L L R   + +    D      +L+        +S++  +L +   +I+  + 
Sbjct: 328 HGADLDILWLQRDLSLYVVNMFDTHQAGKLLN-------YSSLSLAYLMFHFCKIVAQKH 380

Query: 526 SSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +   +I     ++  +A E+++ +L ++  LR  LI 
Sbjct: 381 FQMADWRIRPLPDELLAYAREDTHYLLYIYDNLRNILIE 419


>gi|149912958|ref|ZP_01901492.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
 gi|149813364|gb|EDM73190.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
          Length = 203

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 70/213 (32%), Gaps = 25/213 (11%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 L+     +    T  ++    +   + +S  D                + +  Q
Sbjct: 8   NDLPDGLDLGPVVAIDCETMGLNPHRDRLCVVQMSGGDG---------------NAYLVQ 52

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
              G+          L    EN   LK+ H  ++D   +   +G          + S ++
Sbjct: 53  IDKGQTEAPN-----LAALLENPDILKLFHFGRFDIAAMFNAFGALAAPVYCTKIASKLV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H + ++ Q+ L    K+I K ++SS            ++A  +   + QL   L
Sbjct: 108 RTYTDRHGLKNLMQELLD---KDISKQQQSSDWGAPKLTEAQLDYAASDVLYLHQLRDEL 164

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              L  E  + + +      + + +++++ G  
Sbjct: 165 NRMLAREGRVEMAQAC-FDFLPIRAKLDLAGWP 196


>gi|114553916|ref|XP_514382.2| PREDICTED: exosome component 10 isoform 5 [Pan troglodytes]
          Length = 885

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADSVLQKPQPQLYRPIEETPCHFIS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 504 TQQLTAFQL 512


>gi|24374123|ref|NP_718166.1| ribonuclease D [Shewanella oneidensis MR-1]
 gi|24348616|gb|AAN55610.1|AE015699_8 ribonuclease D [Shewanella oneidensis MR-1]
          Length = 367

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 66/210 (31%), Gaps = 30/210 (14%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           +  + +   +   V + +                +++K   I             K   +
Sbjct: 2   FQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLI--------QAYDGKTLAL 53

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-SMRGF 486
              +++                LS      +N + +K+ H+   D  V   YG       
Sbjct: 54  IDPIALPD--------------LSAFWALLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPL 99

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIEN 545
            D  + + +   G   H +     K +     E++   +S     +   +  Q  +A  +
Sbjct: 100 FDSQIAASLCGMG---HGLGY--AKLVETCLGEVIDKGESRTDWMRRPLTDAQLSYAAND 154

Query: 546 SNVILQLWLLLRPKLI-VEKLLHVYERLDK 574
              + QL+  L  KL   ++L  +YE  ++
Sbjct: 155 VLYLYQLYPQLAEKLQTQDRLDWLYEEGER 184


>gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens]
          Length = 679

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFIS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 504 TQQLTAFQL 512


>gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]
 gi|8928564|sp|Q01780|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen
           PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma
           overlap syndrome-associated autoantigen; AltName:
           Full=Polymyositis/scleroderma autoantigen 100 kDa;
           Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma
           autoantigen 2
 gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens]
 gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens]
 gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens]
 gi|56204112|emb|CAI22107.1| exosome component 10 [Homo sapiens]
 gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens]
 gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct]
 gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct]
 gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct]
          Length = 885

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFIS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 504 TQQLTAFQL 512


>gi|114553922|ref|XP_001136272.1| PREDICTED: exosome component 10 isoform 1 [Pan troglodytes]
          Length = 768

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 199 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 256

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 257 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADSVLQKPQPQLYRPIEETPCHFIS 316

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 317 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 356

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 357 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 415

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 416 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 468

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 469 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 527

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 528 TQQLTAFQL 536


>gi|321252929|ref|XP_003192567.1| 5' flap endonuclease [Cryptococcus gattii WM276]
 gi|317459036|gb|ADV20780.1| 5' flap endonuclease, putative [Cryptococcus gattii WM276]
          Length = 639

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 80/246 (32%), Gaps = 37/246 (15%)

Query: 98  VRLATQAFGIPAI------EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
            +       +P +      E +G  +   ++        E   V   S      +L+   
Sbjct: 409 CQHLLDLLRVPILHASIPFEAEGLASSLCLSGLADYVGTEDSDVLGYSA-----KLLRNV 463

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG-DSIDNIPGIPGIGYKTAALLLQE 210
           +     +  E +D E V +   +  E+ V    L G D+  NIP    IG   +   ++E
Sbjct: 464 SSSRKPL--EVVDGEDVRQAVELEKEEWVDWVVLLGTDASSNIP---KIGPVNSLRFIKE 518

Query: 211 YGNLENILINASRI---------KQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261
           Y ++ENIL     +                   E+ +     RKL       P     E 
Sbjct: 519 YHSIENILGAKPELVDRLNALHPVGAPLGAK--EWMKGVEAGRKLFKELPPTPTPAEWEE 576

Query: 262 LI-----LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAI 316
           L       E+ +   +  +L+     K   ++    D D   +E    ++          
Sbjct: 577 LWTGVGMPEEKDDSVVQQWLEE----KFGAKLVELEDPDIYPLEGSENEVGDESESENEN 632

Query: 317 ETEIDR 322
           ET+++R
Sbjct: 633 ETDVER 638


>gi|15890866|ref|NP_356538.1| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|15159163|gb|AAK89323.1| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 208

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G+ +    T  +     +   + +S+ D   D                 + + G
Sbjct: 16  DAARYKGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADV---------------IRIAAG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +          L     +    KI H  ++D  VL H +G++        + S +  +  
Sbjct: 61  QKQAPN-----LVHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     +I K+++SS    +       E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKEMLEV---DISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARL 172

Query: 561 IVEK 564
           I + 
Sbjct: 173 IRDG 176


>gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.]
          Length = 382

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 28/193 (14%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T I     ++  +  ++      F +  D+M  F  K   + ++T         K     
Sbjct: 10  TIIETLSGLKDALVNIKEEKKIGFDLEADSMHHFPEKVCLLQVAT---------KNCIFV 60

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFE 487
           ID             T+  + LS LK  F +    KI H   YD + +   + I +    
Sbjct: 61  ID-------------TIKLKELSLLKPIFADNEITKIFHGADYDVRSLFRDFNIEINNLF 107

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L S  L    +  + A I  ++  Y  K+  K   S  P+       +  +A ++  
Sbjct: 108 DSELASRFLGVKETGLE-AVIRHRFNVYLEKKFTKRDWSKRPL----IDDMLHYAADDVR 162

Query: 548 VILQLWLLLRPKL 560
            ++ L+ +L  +L
Sbjct: 163 YLVPLYEILEKEL 175


>gi|327198220|ref|YP_004306796.1| putative DNA polymerase [Pseudomonas phage KPP10]
 gi|297591746|dbj|BAJ09166.1| putative DNA polymerase [Pseudomonas phage KPP10]
          Length = 885

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 88/291 (30%), Gaps = 61/291 (20%)

Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQI 753
              R+ T        T R    +       + +  G  +R  F     K   I  D+  +
Sbjct: 502 EDGRIATPADSCGAGTSRFKHKQV-ANIPRVTSLYGVPMRNLFGVDTNKCWQIGYDFDSL 560

Query: 754 ELRILAHIA-------------------------KITPLYQVFENSL---------DIHR 779
           E +I AH                                 Q  +            DIH 
Sbjct: 561 EAKIEAHYCLSTAMRLSPAAAQKLKIKFGSNFAKYREACIQAAQEYAVALVAEKPNDIHT 620

Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839
           + AA+I  +     S   R +AK++ +   YG    R+A  +     EA      ++   
Sbjct: 621 VTAAKISTIIGGDFS---RTNAKSVKYGCSYGAQVARVAKIVGCSMQEAQAIFDAFWEAA 677

Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899
             +        +F ++ G        +     I+  +   R+  E A +N+  Q +    
Sbjct: 678 SPLALLKTVLTDFWKEKG-------NKKFIVGIDGRQIPTRS--EHALVNSLFQSAGVIC 728

Query: 900 TRRAMISVHKSLEDHKLA-------------TKMLLQIHDELVFEVPEEEI 937
            + AMI   + L    L               + L+  HDE   EV ++ +
Sbjct: 729 AKVAMIMHDQKLMAEGLLVDFWKDDWKNKSYCQQLIAYHDESQLEVTKDLV 779



 Score = 42.0 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 89/274 (32%), Gaps = 62/274 (22%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
             F I    +               +   D +     +  D  +H    +  ++  T E+
Sbjct: 9   VVFDIEATGL-------------IGEGTVDYTASPWRLKEDFKLHC---AVARDIDTDEV 52

Query: 450 LSY-------LKKFFENEHFLKIGHNI-KYDKLVLH-RYGIS-----------MRG---- 485
             +         K+   E  + IGHNI  YD L L    G+            + G    
Sbjct: 53  FKWGPDEVMDFAKWLGEECSVVIGHNIINYDLLALKLTCGLEYTIGWGETKDTINGNPVK 112

Query: 486 FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS-------- 536
             D +++S  L+  R   H I +   K L   + +    R  ++ +  I+++        
Sbjct: 113 IVDTLVISKALNPDRRPGHGIGAWGDK-LGLAKID---WRAKAVELGLITENAPRGAEFK 168

Query: 537 ----QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
               ++ E+ + + +V L ++  L  +           + +  +  VV++    G   D 
Sbjct: 169 TYHPEMLEYNVRDVDVNLLVYKALMAEWGAWN-WAPAVQTESYVAWVVTRQSHRGFFFD- 226

Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626
              ++++    + L  L E    +         P
Sbjct: 227 ---ERLAQANVRELDQLMEECRAIVEPILPPKKP 257


>gi|47498064|ref|NP_998833.1| exosome component 10 [Xenopus (Silurana) tropicalis]
 gi|45708813|gb|AAH67962.1| exosome component 10 [Xenopus (Silurana) tropicalis]
          Length = 883

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 103/321 (32%), Gaps = 43/321 (13%)

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
           L NR+      +  ++ P + D    +   I+ E         +   F            
Sbjct: 214 LRNRLERQQRQEDLDVPPALADFIHQQRMKISEEDMFCHPYQYELDHF------------ 261

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
              P +  +E+        + +     ++  +D+    +KL      +  +         
Sbjct: 262 --VPLESSMEKPDIQPVLSLQDVPCKFVMKLEDLVALNEKLLQCAEFAVDLE-------- 311

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                            SF   T  + +S  T +D        +  +  L + F N   +
Sbjct: 312 ------------HHSYRSFLGLTCLMQISTRT-EDYIIDVLELRSNMYILNESFTNPSII 358

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H    D   L + +G+ +    D    + +L+     H +  + + +      E  K
Sbjct: 359 KVLHGADSDIEWLQKDFGLYIVNMFDTHQAARILN--LGRHSLDHLLRLY---CNVESDK 413

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVV 580
             + +    +    ++ E+A  +++ +L ++  +R  L     +  ++ + + +   D+ 
Sbjct: 414 RYQLADWRIRPLPEEMIEYARADTHYLLFIYDKMRTALLGAANEQQNLLQLVWQKSRDIC 473

Query: 581 SQMEITGIQIDQDLLKQVSAE 601
            +     I  +   L+    +
Sbjct: 474 LKKFTKSIFTEDSYLELYQKQ 494


>gi|330894750|gb|EGH27411.1| ribonuclease D [Pseudomonas syringae pv. mori str. 301020]
          Length = 377

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 5/176 (2%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D++    ++   +    LD +         I   L +   Q++   + L       L   
Sbjct: 12  DSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQNAWLIDPLLINDWQPLSAL 71

Query: 457 FENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            EN   +K+ H    D  VL R  G       D  L +  L+ G S    + + Q+ L+ 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSM-GYSRLVQEVLNI 130

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
              ++ K    S  + +        +A E++  + +L+ +LRP+L  +K   + + 
Sbjct: 131 ---DLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRLSDDKYAWLLDD 183


>gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta]
          Length = 884

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 116/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP     ++ Q     PI       I 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPPDSVFQKPQPQLYRPIEETPCHFIS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 504 TQQLTAFQL 512


>gi|195382111|ref|XP_002049775.1| GJ21778 [Drosophila virilis]
 gi|317374896|sp|B4LM90|FEN1_DROVI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|194144572|gb|EDW60968.1| GJ21778 [Drosophila virilis]
          Length = 386

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 46/275 (16%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      ++         R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGQPPDLKSGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +   +  G+P ++    EA+   A   
Sbjct: 109 KALKAATEAGDEAEIDKFNRRLVRVTKEHSREAKELLKLMGVPYVDAPC-EAEAQCAALV 167

Query: 126 YIA---EKEGFAVTIIS-TDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
                       +  ++     L++ ++ +      VKE   D   V++   +  ++ + 
Sbjct: 168 KAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEFSYD--KVLQGLELTSKEFID 225

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L  L G   D    I G+G K A  L++ Y ++E IL N    K               +
Sbjct: 226 LCILMG--CDYCESIKGVGPKRAIELIKSYRDIETILENIDTSKYPVPENW------NYK 277

Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            +R+L  +  DV     +  L   + +   L+ FL
Sbjct: 278 RAREL-FIEPDVADASAI-DLKWTEPDEDGLVQFL 310


>gi|112491261|pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain
 gi|112491264|pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn
 gi|112491267|pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
 gi|112491277|pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
          Length = 410

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 15/249 (6%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K +    LS+    ++ ++     +    +    +   +    +I      + W   +  
Sbjct: 29  KPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPI 88

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
               S ++ +   D  ++K IA+ +   +  D  S+      + +S    +D        
Sbjct: 89  WVDTSTELESMLEDLKNTKEIAVDL---EHHDYRSYYGIVCLMQIST-RERDYLVDTLKL 144

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDI 505
           +E L  L + F N   +K+ H    D + L R  G+ + G  D    S  +  G   H +
Sbjct: 145 RENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAI--GLPRHSL 202

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN--VILQLWLLLRPKLIV- 562
           A + + + ++       S+K  +   +I        A   ++   +L ++  LR KLI  
Sbjct: 203 AYLLENFANFKT-----SKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIES 257

Query: 563 EKLLHVYER 571
            KL  V   
Sbjct: 258 NKLAGVLYE 266


>gi|21328703|gb|AAM48709.1| 3'- 5' exonuclease family protein [uncultured marine
           proteobacterium]
          Length = 204

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 70/212 (33%), Gaps = 25/212 (11%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
                LE     +    T  ++    +   + +S+ D                  H  Q 
Sbjct: 9   DLPDGLELGPIVAIDCETMGLNPKRDRLCVVQLSSGDGH---------------AHLVQV 53

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLD 497
           + G+          L +  E+ + LK+ H  ++D   +   +G          + S +  
Sbjct: 54  AKGQTAAPN-----LCRMLEDPNVLKLFHFGRFDIAAMKEAFGALTAPVYCTKIASRMTR 108

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           +    H + ++ Q+ L     +I K ++SS            E+A  +   +  L   L 
Sbjct: 109 TYTDRHGLKNLLQELLCV---DISKQQQSSDWGAADLTKAQVEYAASDVLYLHALRERLN 165

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
             LI E  + + +      +   +++++ G  
Sbjct: 166 EMLIREGRMELAQSC-FDFLPTRAELDLAGWP 196


>gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes]
          Length = 909

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 199 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 256

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 257 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADSVLQKPQPQLYRPIEETPCHFIS 316

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 317 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 356

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 357 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 415

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 416 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 468

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 469 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 527

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 528 TQQLTAFQL 536


>gi|310790037|gb|EFQ25570.1| DNA excision repair protein [Glomerella graminicola M1.001]
          Length = 1271

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 100/308 (32%), Gaps = 43/308 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FGIP I     EA+   A    +   +G    I++ 
Sbjct: 922  KKDRRDADEVTQVMVTECQALLRLFGIPYITAP-MEAEAQCAELVQLGLVDG----IVTD 976

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D    +   T +Y  +      +E      + K+  +  E+++ +  L G   D   G
Sbjct: 977  DSDCF--LFGGTRIYKNMFNSNKFVECYLSSDLEKELSLSREQLIAIAQLLG--SDYTEG 1032

Query: 196  IPGIGYKTAALLLQEYGNLENI---------------LINASRIKQKKRRENILEYAETA 240
            +PG+G  TA  +L E+   + +                  A  +    RR+     A   
Sbjct: 1033 LPGVGPVTAVEILSEFPGKDGLDRFKEWWQDVQMNNRPKEADAVSP-FRRKFRKSQATKL 1091

Query: 241  RL-----SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295
             L     +  +        +    EH      +   L  F        L+  +  + +  
Sbjct: 1092 FLPSGFPNPAVTDAYIRPEVDSSPEHFQWGVPDLEGLRQF--------LMATIGWSKERT 1143

Query: 296  AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
               + PV+ D+N  + +G         + T+      + + +     S++    +   R 
Sbjct: 1144 DEVLVPVIRDMNKRDMEGTQTNITRYFEGTVGVGARDAFAPRQKGATSKRMADAVSRLRA 1203

Query: 356  QKLSQYPI 363
                +   
Sbjct: 1204 NTNGEQTT 1211


>gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona
           intestinalis]
          Length = 647

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 87/252 (34%), Gaps = 31/252 (12%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P    LE+   +   PI+ DS   +     + + + +L+     +  +   +  ++    
Sbjct: 43  PLSSQLEKPTPVKYGPIDPDSCIFVDQVNALHKLMDELKEASEIAVDLEAHSYRSYQGIT 102

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             + +ST                      ++D        +  L+ L + F N + +K+ 
Sbjct: 103 CLMQLST---------------------RTKDYIVDTIALRAELNILNQVFANPNIIKVF 141

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D + L R +GI +    D    +  L  G   H +  +   + +         +K
Sbjct: 142 HGADSDIIWLQRDFGIYVVNLFDTGQAARAL--GLQRHSLDYLLTHYCNVQAD-----KK 194

Query: 526 SSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
             +   +I     ++  +A  +++ +L ++ ++R  L+      +  ++     D+    
Sbjct: 195 YQLADWRIRPLPKEMLLYAQGDTHYLLYVYDMMRLDLVKTGDPGLLHKVIDKSRDICCLK 254

Query: 584 EITGIQIDQDLL 595
               I  D   L
Sbjct: 255 YEKPITNDTSHL 266


>gi|222480031|ref|YP_002566268.1| XPG I domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222452933|gb|ACM57198.1| XPG I domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 325

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           R   +   +P +E                  +  G      S D D +   +PTT    T
Sbjct: 138 RELLRLLDVPIVEAPAEGEAQCAHMAATGTVDHAG------SEDYDTLLFGAPTTLRQLT 191

Query: 158 VKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
            K   E +D+   +   G   + +V    L G   D   G+ GIG KTA   ++E+G+L 
Sbjct: 192 SKGDPELMDLAATLDDLGFDRQGLVDAAMLCG--TDFNEGVRGIGPKTAVKAVREHGDLW 249

Query: 216 NILI 219
            +L 
Sbjct: 250 GVLD 253


>gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]
 gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens]
 gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens]
 gi|56204111|emb|CAI22106.1| exosome component 10 [Homo sapiens]
          Length = 860

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFIS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 504 TQQLTAFQL 512


>gi|254292595|ref|YP_003058618.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
 gi|254041126|gb|ACT57921.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
          Length = 204

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK    +   LKI H  ++D  ++ +  GI         + S +  +    H +  ++++
Sbjct: 63  LKALMSDTKVLKIFHFARFDVAMMKKWLGIECAPIFCTKIASKLARTYTDRHGLKDVSRE 122

Query: 512 WLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            +     ++ K+++SS    D +S++Q+  +A  +   + ++   L   L  E  + + +
Sbjct: 123 LVG---ADMSKAQQSSDWGADSLSEAQLA-YAASDVLYLHEIREKLILMLEREGRMELAQ 178


>gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
 gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
          Length = 1432

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 72/200 (36%), Gaps = 22/200 (11%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K    +  +D  +   +  T     ++ L       I++ +   ++N  ++         
Sbjct: 359 KAIAITDHADVQAFPEAYHTGASEKMKILYGYEANMIDDHAL-LVLNPTEMD-----YRD 412

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLS------VHTSQD 438
                F + T  + + +   I I    +   +  +   +       LS         + +
Sbjct: 413 REYVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDE 472

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIMLM 492
             G     K+++   K F+ +      GHN+++D       L R G+    +   D + +
Sbjct: 473 MVGAADDEKDVIKKFKDFYGD--RPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 530

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           S +L   ++ H + S+A+K+
Sbjct: 531 SRLLHPEQTRHTLDSLAKKY 550


>gi|154292277|ref|XP_001546714.1| hypothetical protein BC1G_14593 [Botryotinia fuckeliana B05.10]
 gi|150846169|gb|EDN21362.1| hypothetical protein BC1G_14593 [Botryotinia fuckeliana B05.10]
          Length = 302

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 13/138 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   SP    + T
Sbjct: 153 CQRLLKLMGIPYIIAP-TEAEAQCAALAR----AGKVYAAASEDMDTLCFDSPILLRHLT 207

Query: 158 VKEEKIDI------EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E++ +       E V+    +  ++ V L  L G   D +  IP IG  TA  L++E+
Sbjct: 208 FSEQRKEPIQEVSLEKVLTGLNMDRKQFVDLCILLG--CDYLDPIPKIGPHTALKLIREH 265

Query: 212 GNLENILINASRIKQKKR 229
           G+LE ++   +  K+++ 
Sbjct: 266 GDLETLVAWITADKKERY 283


>gi|67003799|gb|AAY60812.1| hypothetical protein [Staphylococcus aureus]
          Length = 238

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 91/243 (37%), Gaps = 31/243 (12%)

Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766
            T T R+ +   N+Q +P        +++  +    KK+ + D+   E  + A++ +   
Sbjct: 2   GTRTHRITTKRFNVQGLPK------LVQQMILPSQFKKVYTIDFKSFEPSVAAYMTQDEQ 55

Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS-IIYGISPFRLATQLRIPR 825
           L     +   ++  +  ++       +S + R   K       ++G        ++    
Sbjct: 56  LIDYLNHEEGLYDALLRDL------SLSKEKRVSVKRAFIGSFLFGGRYSSSKFKINQEV 109

Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885
           SE      +   +F  + E+    K  V +   + T +G              +      
Sbjct: 110 SEINWL--QVMSKFKKVIEF----KEQVEKYKTMPTPYGIE----------HDMSAFQGS 153

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV-PEEEITTASQII 944
           + +   +Q  A+ I +  ++ V+K+  + K   K+++ IHD ++ E   +      +Q++
Sbjct: 154 SIMAIYVQTVASYIFKHILLEVYKAQCEKK-TFKIIVPIHDAIMIECNDKGIAQNVAQLM 212

Query: 945 VHS 947
             +
Sbjct: 213 KDT 215


>gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           gasseri ATCC 33323]
          Length = 1432

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 72/200 (36%), Gaps = 22/200 (11%)

Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386
           K    +  +D  +   +  T     ++ L       I++ +   ++N  ++         
Sbjct: 359 KAIAITDHADVQAFPEAYHTGASEKMKILYGYEANMIDDHAL-LVLNPTEMD-----YRD 412

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLS------VHTSQD 438
                F + T  + + +   I I    +   +  +   +       LS         + +
Sbjct: 413 REYVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDE 472

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIMLM 492
             G     K+++   K F+ +      GHN+++D       L R G+    +   D + +
Sbjct: 473 MVGAADDEKDVIKKFKDFYGD--RPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEV 530

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           S +L   ++ H + S+A+K+
Sbjct: 531 SRLLHPEQTRHTLDSLAKKY 550


>gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis]
          Length = 673

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 116/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP     ++ Q     PI       I 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPPDSVFQKPQPQLYRPIEETPCHFIS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 504 TQQLTAFQL 512


>gi|332807620|ref|XP_001136452.2| PREDICTED: exosome component 10 isoform 3 [Pan troglodytes]
          Length = 884

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 199 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 256

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 257 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADSVLQKPQPQLYRPIEETPCHFIS 316

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 317 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 356

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 357 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 415

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 416 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 468

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 469 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 527

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 528 TQQLTAFQL 536


>gi|84514850|ref|ZP_01002213.1| exonuclease, putative [Loktanella vestfoldensis SKA53]
 gi|84511009|gb|EAQ07463.1| exonuclease, putative [Loktanella vestfoldensis SKA53]
          Length = 203

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 61/214 (28%), Gaps = 25/214 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L      +    T  ++    +   I +S  D                  H  
Sbjct: 7   HNDLPDGLNLGPVVAIDCETMGLNPHRDRLCLIQMSGGDGDC---------------HLV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q S G+          L     +   LK+ H  ++D   L   +G+         + S +
Sbjct: 52  QVSKGQAGAPN-----LCAMLTDPAVLKLFHFGRFDIAALLNAFGVVTAPVYCTKIASKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H +  + Q  L     +I K ++ S            ++A  +   + QL   
Sbjct: 107 VRTYTDRHGLKVLLQDMLGI---DISKHQQQSDWGAPKLTPAQLDYAASDVLYLHQLKAA 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
               L  E    V +      +   + +++ G  
Sbjct: 164 FDVLLQREDRTAVAKAC-FDFLPTRAALDLHGWP 196


>gi|114553924|ref|XP_001136359.1| PREDICTED: exosome component 10 isoform 2 [Pan troglodytes]
          Length = 811

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 199 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 256

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 257 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADSVLQKPQPQLYRPIEETPCHFIS 316

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 317 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 356

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 357 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 415

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 416 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 468

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 469 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 527

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 528 TQQLTAFQL 536


>gi|315122172|ref|YP_004062661.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495574|gb|ADR52173.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 209

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 24/179 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
               G  +    T  +     +   + +S  D              D+    ++     N
Sbjct: 17  ARYTGPIAVDTETLGLIPRRDRLCVVQLSPGDGTA-----------DIIRIAAEQKNAPN 65

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSS 502
            +T            NE   KI H  ++D  VL + +G+ ++      + S +  +    
Sbjct: 66  LVT---------MLANETQEKIFHYARFDIAVLFYTFGVRVKPIFCTKIASRLTRTYIDR 116

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           H +    ++ L     +I K ++ S   +     +  ++A  +   +  L      KL 
Sbjct: 117 HGLKDNLRELLGV---DISKKQQLSDWSEDDLSHEQLQYAASDVVHLHALREKFIAKLQ 172


>gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens]
          Length = 884

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 199 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 256

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 257 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFIS 316

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 317 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 356

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 357 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 415

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 416 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 468

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 469 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 527

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 528 TQQLTAFQL 536


>gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
 gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
          Length = 512

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 84/261 (32%), Gaps = 31/261 (11%)

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
            + + D       S F  LS +    + E   +       + +    ++      + +  
Sbjct: 172 PQDKFDYPADNSNSPFKHLSREEELTSMEYMKEFPADGPDEPVKPKSLSETPLFIVESLP 231

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
            ++    KL      +  +                          SF+     + +S  +
Sbjct: 232 ALETMAAKLRASSEIAVDLE--------------------NHHYRSFQGFVCLMQVSTRS 271

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
                    L   I   L+  F N    K+ H    D L L R +GI +    D    + 
Sbjct: 272 QDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDTGQAAR 331

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQL 552
           VL        +A + Q +      E+   ++  +   ++    +++ ++A E+++ +L +
Sbjct: 332 VLR--MERFGLAFLLQTFC-----EVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYV 384

Query: 553 WLLLRPKL-IVEKLLHVYERL 572
           +  ++  L   E    +Y  +
Sbjct: 385 YDKMKGLLRDAETTEDLYLEV 405


>gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta]
          Length = 884

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 116/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 199 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 256

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP     ++ Q     PI       I 
Sbjct: 257 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPPDSVFQKPQPQLYRPIEETPCHFIS 316

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 317 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 356

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 357 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 415

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 416 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 468

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 469 LYIYDKMRLELWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 527

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 528 TQQLTAFQL 536


>gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens]
          Length = 899

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 199 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 256

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 257 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFIS 316

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 317 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 356

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 357 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 415

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 416 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 468

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 469 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 527

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 528 TQQLTAFQL 536


>gi|326496741|dbj|BAJ98397.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326514394|dbj|BAJ96184.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 332

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           ++   +K + I      +  D         + ++   +          KE++   K   E
Sbjct: 40  LEPSAAKKLVIGF--DCEGVDLCRNGALCIMQIAFPDAVYLVDAIEGGKELVEACKPALE 97

Query: 459 NEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSS---HD--------IA 506
           ++H  K+ H+ K D   L+ ++GI +    D  +   +++        +D        +A
Sbjct: 98  SDHVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIEEQEGKKRAYDVYISFVSLLA 157

Query: 507 SIAQKWLSYTRKEILKSRKSSIP---IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
                 + Y  KE +++     P    ++     +   A ++   +L +   +  KL   
Sbjct: 158 DPRYCGMPYPEKEEVRTLLRQDPNFWKNRPLSEMMIRAATDDVRFLLNIHEKMMEKLSKV 217

Query: 564 KLLHVYERLDK 574
               +  R + 
Sbjct: 218 SSWRLAVRSEL 228


>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 364

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 75/203 (36%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L+     +       M  ++ +   + ++T +              
Sbjct: 2   IINTNKQLNNVIEILKNTSQIAVDTEFYWMRTYYPELCLVQLATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL       LK+ FE++  LKI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLKDLEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     EI K  + S   ++        ++I++   
Sbjct: 100 TQLAATFL-GFQTQSSLKTLLKEILDI---EIEKESQFSDWRNRPLTQNQLNYSIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++QL   L+ +L   +    +E+
Sbjct: 156 LIQLKEYLQQQLAKSEYQDFFEQ 178


>gi|315497170|ref|YP_004085974.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48]
 gi|315415182|gb|ADU11823.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48]
          Length = 206

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK    +E  LK+ H  ++D  + L   G+         + S +  +    H +  + ++
Sbjct: 63  LKALLTDEKVLKLFHFGRFDIGMFLLHLGVVTAPVYCTKIASKLARTYTDRHGLKDLVRE 122

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            LS    +I K+++SS    +    +   +A  +   +  L   L   L  E    + +
Sbjct: 123 LLSV---DISKAQQSSDWGAQTLTPEQLAYAASDVLHLHTLREKLDTMLAREGRTELAQ 178


>gi|146302997|ref|YP_001190313.1| flap endonuclease-1 [Metallosphaera sedula DSM 5348]
 gi|145701247|gb|ABP94389.1| flap endonuclease 1 [Metallosphaera sedula DSM 5348]
          Length = 300

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 30/191 (15%)

Query: 99  RLATQAFGIPAIEIQG---FEADDIIATYTYIAEK-EGFAVTIISTDKDLMQLVS----- 149
           +   +  G+P ++       EA  + A     A   + +   +   +K +  L       
Sbjct: 89  KELLEYMGVPTVQAPSEGEAEAAYLNAKGITYASASQDYDSLLFGAEKLIRNLTISGKRK 148

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P   +Y  VK E I+   ++KK  I  E+++ +  L G   D  P G+ GIG K A  L
Sbjct: 149 LPNKDVYVEVKPELIETASLLKKLEITREQLIDIAILVG--TDYNPDGVRGIGPKKAYKL 206

Query: 208 LQEYGNLENILINASRIKQKKR--RENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           ++ Y  +ENI  +   + +      E I E      L  ++ +  T + ++         
Sbjct: 207 IKTYKKIENI--DKRELPEPIYFDYEKIRE----LFLKPQVTLPSTPLELS--------- 251

Query: 266 DCNGPRLISFL 276
           D +  ++I FL
Sbjct: 252 DPDPSKIIQFL 262


>gi|254796888|ref|YP_003081725.1| ribonuclease D [Neorickettsia risticii str. Illinois]
 gi|254590124|gb|ACT69486.1| ribonuclease D [Neorickettsia risticii str. Illinois]
          Length = 216

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
            LK    +   +KI H  ++D  +L  Y G+         + S ++ +    H +  +  
Sbjct: 73  RLKSLIVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLKELCS 132

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
             L      + K ++SS         +   +A  +   +  +   L   L  EK + + +
Sbjct: 133 DLLGVR---LNKGKQSSDWGSASLTREQMSYAASDVLYLHAIKEALDVMLKREKRIELAQ 189


>gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 422

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 87/317 (27%), Gaps = 124/317 (39%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN------------------- 773
           +R   I+P  KKL+ AD S IE R+LA +A  TP    F +                   
Sbjct: 71  LRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITH 130

Query: 774 ---------------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI---- 808
                                  DI++   A  FG+  + V+ Q R+  K    ++    
Sbjct: 131 GALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGG 190

Query: 809 ----------IYGISPFRLATQLRIPRSEAAD---------------------------- 830
                     +Y I    +A Q  +P     +                            
Sbjct: 191 GVGAFAAFAAMYHIDLEAMAEQAALPPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDV 250

Query: 831 YIKRYFHRFPGIHEYIEKTK----------NFVRQNGYVETIFGR---RIHYD------- 870
           + + + +  P I  + +  +                  +   + R   R+H         
Sbjct: 251 FKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHTCCGITMQYSRAWLRMHLPSGRVLYY 310

Query: 871 ----------------EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
                              + K +         +    Q  + D+    M ++  +    
Sbjct: 311 AAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAA---- 366

Query: 915 KLATKMLLQIHDELVFE 931
                ++L +HDE++ E
Sbjct: 367 --GYAIVLTVHDEMITE 381


>gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1]
 gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1]
          Length = 392

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 25/196 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T I  T +++ +  KL+     +          +  K   I           +   E + 
Sbjct: 2   TPITTTAELEAFCAKLKGQPFVAVDTEFMRETTYWPKLCLI--------QAAAPSAEAVI 53

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
             L+                 LS       +E   K+ H  + D  + +  G   +   D
Sbjct: 54  DPLADDID-------------LSCFLDILRDESIQKVFHAARQDVEIFNNLGAMPKPLFD 100

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             +       G       ++ ++ L     EI KS + +    +        +A+ +   
Sbjct: 101 TQVAGMAAGFGEQI-AYDALVRQMLKI---EIDKSSRFTDWARRPLSDSQLTYALADVTH 156

Query: 549 ILQLWLLLRPKLIVEK 564
           + +L+ LLR +L  E 
Sbjct: 157 LAKLYPLLRQRLEREG 172


>gi|146737938|gb|ABQ42557.1| DNA polymerase I [Peanut witches'-broom phytoplasma]
          Length = 97

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           IPGIG KTA  LL ++ NL+N+LIN   I     R  I  + +    +R L+ +   VP+
Sbjct: 1   IPGIGPKTALKLLHQFNNLDNLLINLKEIPDN-LRTKIESFKDRIHFNRLLITIDKTVPL 59

Query: 256 TIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           +        E  N   L++F K     +L N+
Sbjct: 60  SFDYTQTYKEKINLNLLLNFCKKYNLNRLYNK 91


>gi|126734481|ref|ZP_01750228.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126717347|gb|EBA14211.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 203

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 64/214 (29%), Gaps = 25/214 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   I +S  D                  H  
Sbjct: 7   QNDLPDGLDLGPVVAIDCETMGLNPHRDRLCLIQMSGGDGDC---------------HLV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q + G+          L    EN   LK+ H  ++D   L   +G          + S +
Sbjct: 52  QVTPGQTAAPN-----LCAMLENPDVLKLFHFGRFDIAALLNAFGALTAPVYCTKIASKL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H + ++ Q  +     +I K ++ S            ++A  +   + QL   
Sbjct: 107 VRTYTDRHGLKTLLQDMVGI---DISKHQQQSDWGAPNLTDAQLDYAASDVLYLHQLKEK 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
               L  E    V +      +   +++++ G  
Sbjct: 164 FDVLLAREHRADVAQSC-FDFLPTRAKLDLAGWP 196


>gi|99079868|ref|YP_612022.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
 gi|99036148|gb|ABF62760.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
          Length = 204

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 71/214 (33%), Gaps = 25/214 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   + +S+ D                  H  
Sbjct: 7   QHDLPNSLDLGPVVAIDCETMGLNPHRDRLCVVQMSSGDGD---------------AHLV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYV 495
           Q + G+          L     N   LK+ H  ++D   L HR+G          + S +
Sbjct: 52  QIAKGQTDAPN-----LTAMLTNPDVLKLFHYGRFDIAALYHRFGALAAPVYCTKIASRL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H + ++ Q  L    ++I K ++ S    +       ++A  +   + +L   
Sbjct: 107 VRTYTDRHGLKNLTQDLLG---QDISKQQQMSDWGAETLTRAQMDYAASDVLHLHRLRDA 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           L  +L+ E    + +      +   +++++ G  
Sbjct: 164 LDQRLVREGRSDLAQAC-FDFLPTRARLDLAGWP 196


>gi|293347809|ref|XP_002726703.1| PREDICTED: rCG30986-like isoform 2 [Rattus norvegicus]
          Length = 860

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 113/354 (31%), Gaps = 41/354 (11%)

Query: 268 NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIK 327
           N P L          K + +  +    +     P  LD+            +       +
Sbjct: 195 NTPFLPKIFVKPNARKPLPQALSKERRERPQDRPEDLDV-------PPALADFIHQQRAQ 247

Query: 328 TSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387
             +    +          TP    L+R Q     P+       + +  ++ +  +KL   
Sbjct: 248 QVEQDVFAHPYQYELDHFTPPPSVLQRPQPQLYRPVEETPCHVVSSLDELVELNEKLLGC 307

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +  +                          SF   T  + +S  T +D        +
Sbjct: 308 QEFAVDLE--------------------HHSYRSFLGLTCLMQISTRT-EDFIVDTLELR 346

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
             +  L +   +   +K+ H    D   L + +G+ +    D    + +L+   + H + 
Sbjct: 347 SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLD 404

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            + + +       +  +++  +   +I     ++  +A ++++ +L ++  +R +L    
Sbjct: 405 HLLRLYCG-----VESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRMRLELWERG 459

Query: 565 LLHV--YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
                  + + +   D+  +  +  I  D+  L+    +  K+L S +   + L
Sbjct: 460 NDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLNSQQLTAFQL 512


>gi|293347807|ref|XP_002726702.1| PREDICTED: rCG30986-like isoform 1 [Rattus norvegicus]
 gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus]
          Length = 885

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 113/354 (31%), Gaps = 41/354 (11%)

Query: 268 NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIK 327
           N P L          K + +  +    +     P  LD+            +       +
Sbjct: 195 NTPFLPKIFVKPNARKPLPQALSKERRERPQDRPEDLDV-------PPALADFIHQQRAQ 247

Query: 328 TSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387
             +    +          TP    L+R Q     P+       + +  ++ +  +KL   
Sbjct: 248 QVEQDVFAHPYQYELDHFTPPPSVLQRPQPQLYRPVEETPCHVVSSLDELVELNEKLLGC 307

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +  +                          SF   T  + +S  T +D        +
Sbjct: 308 QEFAVDLE--------------------HHSYRSFLGLTCLMQISTRT-EDFIVDTLELR 346

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
             +  L +   +   +K+ H    D   L + +G+ +    D    + +L+   + H + 
Sbjct: 347 SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLD 404

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            + + +       +  +++  +   +I     ++  +A ++++ +L ++  +R +L    
Sbjct: 405 HLLRLYCG-----VESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDRMRLELWERG 459

Query: 565 LLHV--YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
                  + + +   D+  +  +  I  D+  L+    +  K+L S +   + L
Sbjct: 460 NDQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLNSQQLTAFQL 512


>gi|169842660|ref|ZP_02875765.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 62

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876
           +  +I  YF+    I E+IE+T    +  GYV T FGRR    ++ S  
Sbjct: 11  SKKFIDDYFNLRRPIREFIEETLEKAKNEGYVTTYFGRRRPTPDVKSSN 59


>gi|330964859|gb|EGH65119.1| ribonuclease D [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 377

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F                   + +  + 
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTF-------------------YPIAAL- 45

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
             L +   Q +   + L     + L    EN   +K+ H    D  VL R  G       
Sbjct: 46  --LQIGDGQSAWLIDPLLINNWAPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L+    ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLNI---DLPKGETRSDWLQRPLSDTQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFAILRPRLSDDKYAWLLDD 183


>gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514]
 gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514]
          Length = 372

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 71/204 (34%), Gaps = 32/204 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I +   ++  + +L +    +     D++ A+  K   + I+T                 
Sbjct: 18  IDSDVTLKNLLGRLSSTPWVALDTEADSLHAYPEKVCLLQITT----------------P 61

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLHRYG-ISMRGFED 488
           L        +G N         L    +       I H   YD  +L ++     +   D
Sbjct: 62  LGDELIDPLSGIN---------LDPLLDTFGGHELIMHGSDYDLRLLRKHHAFVPKAIFD 112

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            ML S +L  G +   +  +   +L  T +   K  + +    +    +++ +A  +++ 
Sbjct: 113 TMLASRLL--GHTQFGLVHLVAHYLGVTLE---KGSQKADWAKRPLTPRMEAYARNDTHY 167

Query: 549 ILQLWLLLRPKLIVEKLLHVYERL 572
           +  L   L+  L V+  L  ++ L
Sbjct: 168 LKHLADRLKSDLEVKGRLGWHQEL 191


>gi|194473828|ref|YP_002048652.1| exonuclease [Morganella phage MmP1]
 gi|194307049|gb|ACF42031.1| exonuclease [Morganella phage MmP1]
          Length = 282

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 80/233 (34%), Gaps = 19/233 (8%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPV-----NAIAGFCNMLWKLLQNSRKESI 57
            +  + ++DG   +++A  A  + +   D          A         +     +K   
Sbjct: 17  SDKGILVMDGDWLVFKAMAAAEVETDWGDDEWTLICDHKAAREILFADIQSFVERKKAWR 76

Query: 58  ASHFAVIFDYPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            +   + F   +V +R E+  P+YKANR    + +      +R          +     E
Sbjct: 77  NAPIVLAF-TDSVNWRKELVDPEYKANRKATRKPVGY-RKFLRELWDNPDYMCVLEPRLE 134

Query: 117 ADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP 175
            DD++      ++  G     ++S DKD    +     L+ T          ++++    
Sbjct: 135 GDDVMGIIGSNSKAFGAAKAVLVSCDKDFKT-IPYCDFLWCTTGN-------ILQQDLTT 186

Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            +     Q + GD  D   GI G G   A  +   Y  +E    +  +   +K
Sbjct: 187 ADYWHLFQTIKGDLTDGYSGIAGWGDTAAEFINNPY--IEEEYEHTFKSGARK 237


>gi|163738084|ref|ZP_02145500.1| exonuclease, putative [Phaeobacter gallaeciensis BS107]
 gi|161388700|gb|EDQ13053.1| exonuclease, putative [Phaeobacter gallaeciensis BS107]
          Length = 204

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 69/190 (36%), Gaps = 26/190 (13%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   + +S  D                + H  
Sbjct: 7   QNDLPDGLDLGPVVAIDCETMGLNPHRDRLCVVQLSGGDG---------------NAHMV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYV 495
           Q + G++         L    E+ + LK+ H  ++D   + H +G          + S +
Sbjct: 52  QIAKGQSEAPN-----LCAMLEDPNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWL 554
           + +    H + ++ Q+ +     +I K ++ S     ++SD+Q+ ++A  +   + +L  
Sbjct: 107 VRTYTDRHGLRNLTQELIGV---DISKQQQMSDWGAAQLSDAQL-DYAASDVLHLHRLRA 162

Query: 555 LLRPKLIVEK 564
            L  +L  E 
Sbjct: 163 ALDKRLDRED 172


>gi|255550866|ref|XP_002516481.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223544301|gb|EEF45822.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 342

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 60/176 (34%), Gaps = 15/176 (8%)

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I    +  D         + ++   +          + +L   K   E+ +  K+ H+ K
Sbjct: 59  IGFDCEGVDLCRHGTLCIMQIAFPDAIFLVDATQGGEMLLKACKPALESSYITKVIHDCK 118

Query: 471 YDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDI--ASIAQKWL----SYTRKEILKS 523
            D   L+ ++GI +    D  +   +++       +    I+   L     Y     L+ 
Sbjct: 119 RDSEALYFQFGIKLHNVFDTQIAYSLIEEQEGRTKLPDDYISFVGLLADPRYCGISYLEK 178

Query: 524 RKSSIPIDKISD--------SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +  + + + S+          +   A ++   +L ++  +  KL    L ++  R
Sbjct: 179 EEVRLLLRQDSNFWTYRPLSELMIRAAADDVRFLLYIYHKMIKKLNQRSLWYLAVR 234


>gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 964

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 24/238 (10%)

Query: 333 SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV-QKLETIGSAS 391
           S  D  S I+ ++   +   E+ Q + +   N   Y       D  + + +++E      
Sbjct: 717 SFLDDLSVIDQQKVTVEDNSEQNQNIEKLYPNRKLYFINQIDSDESRILKEEIEKNSIFG 776

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
             +                    + KD     V TI   +S            L  +I  
Sbjct: 777 IDLE----------------YYSENKDKNLGFVCTIQ--ISTVNMDFMIDAMALRNQINQ 818

Query: 452 YL-KKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
            L K  F N+  +KI H  + D   L   + I +    D M    ++ + + S+ + +++
Sbjct: 819 LLNKSLFLNKTKIKILHGCENDIKWLKNDFDIDIVNLFDTMFAEMIIKNKQQSYSLKNLS 878

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           Q +L     E+ KS + S    +   + +  +A  +S ++L+L+ +++  L  + LL+
Sbjct: 879 QDYLGV---ELDKSYQISDWRIRPLPTPMMNYARVDSFILLRLFPIMKQMLTSKNLLN 933


>gi|326424986|ref|YP_004286208.1| hypothetical protein PsPphi15_gp30 [Pseudomonas phage phi15]
 gi|325048390|emb|CBZ42003.1| hypothetical protein [Pseudomonas phage phi15]
          Length = 307

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 49/147 (33%), Gaps = 13/147 (8%)

Query: 67  YPAVTFRNEIYPDYKANR--PKIPEMLLPQLPLVRLATQAFGIP-AIEIQGFEADDIIAT 123
                FR +I   YK NR   + P              +A G+  A    G E DD+I  
Sbjct: 84  SGKGNFRLDILESYKGNRVTKRKPVGYPAFCESTMEHFEANGVDNAFRWDGVEGDDVIGI 143

Query: 124 YTYIAEKEGFAVTI-ISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182
                E  G    I +S DKD   +          ++  + D+           +K    
Sbjct: 144 LMTKPELAGCDRVIGVSCDKDFNTIPGDF-FWLTHMQLVRNDLAA--------ADKWHMR 194

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQ 209
           Q   GD+ D   GIP +G      L+ 
Sbjct: 195 QTCMGDTTDGYGGIPQVGESFEGDLMA 221


>gi|89067364|ref|ZP_01154877.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
 gi|89046933|gb|EAR52987.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
          Length = 203

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 66/213 (30%), Gaps = 25/213 (11%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 L+     +    T  ++    +   + +S  D                  H  Q
Sbjct: 8   NDLPDGLDLGPVVAIDCETMGLNPHRDRLCVVQMSGGDGH---------------AHLVQ 52

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
            + G+ +        L    EN   LK+ H  ++D   L   +G          + S ++
Sbjct: 53  VAKGQTSAPN-----LVAMLENPDVLKLFHFGRFDIAALMNAFGARTAPVYCTKIASKLV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H +  + Q  +     ++ K ++ S    +       ++A  +   + +L   L
Sbjct: 108 RTFTDRHGLKVLLQDLVGV---DVSKHQQQSDWGAETLSDAQLDYAASDVLHLHRLREKL 164

Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              L  E    + +      +   +Q+++ G  
Sbjct: 165 DEMLAREGRTMIAQAC-FDFLPTRAQLDLAGWP 196


>gi|262194484|ref|YP_003265693.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077831|gb|ACY13800.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS--SHDI 505
           + L  + +   +   +KI HN ++++ V  + G+ +    D + +S  L   +    H +
Sbjct: 811 DDLGPVSELLASRAVVKIIHNAQFERSVFRKLGMDIENVFDTLKVSRRLRGRKREGGHGL 870

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            ++  + L    +E+ K  + S    +    +  ++A  ++ V+L L      +L+V 
Sbjct: 871 GAVCARELG---RELDKHEQRSDWTLRPLTQRQLDYAALDAEVLLVLHERFTRELLVP 925


>gi|325959793|ref|YP_004291259.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
 gi|325331225|gb|ADZ10287.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
          Length = 328

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 22/229 (9%)

Query: 65  FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           +D        E    Y     ++   ++      +   +  G+P I+  G E +   A  
Sbjct: 105 WDKALEEGNLEEARKYAVRSSRMSRDIIEGS---KKLLEILGVPYIQALG-EGE---AQA 157

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKM 179
           +Y+ E  G A  + S D D +   +       T+       E I ++ V++   I  E++
Sbjct: 158 SYMVEN-GDAWCVGSQDYDCILFGATRMVRNLTITGGKANLELITLKKVLENMEITREQL 216

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS---RIKQKKRRENILEY 236
           V +  L G   D   G+ G+G KT   L++++G++ N++        +     R   LE+
Sbjct: 217 VDIAILVG--TDFNRGVKGVGAKTGLKLIKKHGDIFNVIEKNDYEMDVDPTILRNMFLEH 274

Query: 237 AETARLSRKL--VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283
                   +L       +  +    +     +      +     L+  +
Sbjct: 275 --NVVKDYELKWNSPDKEAAVEFLCDQHDFSEQRVLSALDKFAKLDNKQ 321


>gi|284504378|ref|YP_003407093.1| flap-specific endonuclease [Marseillevirus]
 gi|282935816|gb|ADB04131.1| flap-specific endonuclease [Marseillevirus]
          Length = 362

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 34/194 (17%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+      G+  +  +G EAD ++++Y       G      S D D+     P       
Sbjct: 171 VKNLLDILGVRYVSAKG-EADGVLSSYVIK----GKLFAACSADTDVHAYGVPFAIPDVD 225

Query: 158 VKEEKIDI---EHVIKKWGIPPEKMVCLQALTG---------DSIDNIPGIPGIGYKTAA 205
              E   +   E  ++  G+  E+ + L  + G         ++        GIG+KTA 
Sbjct: 226 TSSETFTLVHREQYLEDLGLTEEQFLDLCIMCGCDYNDRASQEAKTAGKKARGIGWKTAL 285

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
            L+++YG+LE I     +I             +   L+ K    R  + +   ++ +   
Sbjct: 286 SLIRKYGSLEEI----EKIPG----------VDVGPLNYK--RCRELLKVQEQVDEIPPG 329

Query: 266 D-CNGPRLISFLKA 278
              N   L +F + 
Sbjct: 330 GKPNREDLENFFQE 343


>gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda
           melanoleuca]
          Length = 885

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/410 (12%), Positives = 127/410 (30%), Gaps = 57/410 (13%)

Query: 268 NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIK 327
           N P L          K + R  +    +     P  LD+            +       +
Sbjct: 218 NTPFLPKIFIKPNAQKPLPRALSKERRERPQDRPEDLDV-------PPALADFIHQQRTQ 270

Query: 328 TSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387
             +    +          TP    L++ Q     P+       + +  ++ +  +KL T 
Sbjct: 271 QVEQDMFAHPYQYELDHFTPPDPVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLTC 330

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +  +                          SF   T  + +S  T         L  
Sbjct: 331 QEFAVDLE--------------------HHSYRSFLGLTCLMQISTRTEDFIIDTLELRS 370

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
           E+   L +   +   +K+ H    D   L + +G+ +    D    + +L+     H + 
Sbjct: 371 EMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN--LGRHSLD 427

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            + + +       +  +++  +   +I     ++  +A ++++ +L ++  +R +L    
Sbjct: 428 HLLKLYCG-----VESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERG 482

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
                   ++P+   V+      I      LK+ +  I  +   LE  +Y       N  
Sbjct: 483 -------NEQPVQLQVAWQRSRDI-----CLKKFAKPIFTDESYLE--LYRKQKRHLN-- 526

Query: 625 SPKQLG--DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
             +QL    +LF      +  + ++  +      + +I        + I+
Sbjct: 527 -TQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGII 575


>gi|237800267|ref|ZP_04588728.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023124|gb|EGI03181.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 377

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   +  +  + +++   +       +D F+  PIA  +   D K           
Sbjct: 6   HWIRDDDSLALYCAQWQSLPFVALDTEFMRVDTFY--PIAALLQIGDGKSAWLI------ 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + L       L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLLINDWRPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLDI---DLPKGETRSDWLQRPLSETQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFAILRPRLSDDKYAWLLDD 183


>gi|330879592|gb|EGH13741.1| ribonuclease D [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 377

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F+  PIA  +   D +     +   I 
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFY--PIAALLQIGDGQSAWLIEPLLIN 63

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                                 + L    EN   +K+ H    D  VL R  G       
Sbjct: 64  N--------------------WAPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L+    ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLNI---DLPKGETRSDWLQRPLSDTQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFAILRPRLSDDKYAWLLDD 183


>gi|52548675|gb|AAU82524.1| DNA repair protein [uncultured archaeon GZfos18C8]
          Length = 190

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  VK E I+++  + + GI  E+++ +  L G   D  PGI GIG K A  L+ 
Sbjct: 48  PGKKVYVDVKLEIIELQPNLDRLGITEEQLIDIAILVG--TDYDPGIHGIGAKKALQLIY 105

Query: 210 EYGNLENIL-------INASRIK 225
           ++G++E+ L        +   IK
Sbjct: 106 KHGSIEDALSILGESIEDLDEIK 128


>gi|124802099|ref|XP_001347365.1| endonuclease, putative [Plasmodium falciparum 3D7]
 gi|23494944|gb|AAN35278.1|AE014830_22 endonuclease, putative [Plasmodium falciparum 3D7]
          Length = 388

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            ++S D D +   +P    + T K+++  I+ E ++ +  I  E+ +    L+G   D  
Sbjct: 260 IVVSDDTDALAFGAPNLIRFITNKKKRHIINKEELLNELNINYEQFIDFCILSG--CDYS 317

Query: 194 PGIPGIGYKTAALLLQEYGNLENILIN 220
             IPGIG   A  ++++Y  +E  L +
Sbjct: 318 AKIPGIGPVKAHEIIKKYKTIETFLES 344


>gi|325088958|gb|EGC42268.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H88]
          Length = 807

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 107/319 (33%), Gaps = 18/319 (5%)

Query: 255 ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGI 314
           + +  E L   D         +K L       R        A+   P V D   ++    
Sbjct: 90  VDVIDELLEKADACLDEFTGIIKRLS-PSQAERGVVLGKKTASANFPSVYDFGPSKIPKP 148

Query: 315 AIETEIDRDTTIKTSQFSSL------SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
            +      +     + F  L      +      ++ +T     +   +   +  I N +Y
Sbjct: 149 QLLFNSRPNNKDDGTPFRPLLRSKPHAITPLSTSASETSPTGTITSYKHPYETEIRNSTY 208

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP---IAIAISTLDQKDDTSFKVE 425
              V T  +   +   ET  +     + + + +  ++      IAI  L+  D  S+   
Sbjct: 209 PSSVYTISVPGKLAPFETTTATFVDTL-EGIHSMLAELKEVTEIAI-DLEHHDAHSYHGL 266

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
              + +S              +E L  L + F +   LK+ H    D + L R  G+ + 
Sbjct: 267 VCLMQISTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIV 326

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           G  D    +  L+       +  + +K+ ++  +   K  + +    +     + ++A  
Sbjct: 327 GLFDTYHAAVALN--YPKKSLKFLLEKFANFQAE---KKYQIADWRLRPLLPGMFDYARS 381

Query: 545 NSNVILQLWLLLRPKLIVE 563
           +++ +L ++  +R  LI  
Sbjct: 382 DTHYLLYIYDQIRNDLIEH 400


>gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
 gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
          Length = 512

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 82/259 (31%), Gaps = 27/259 (10%)

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375
            + + D       S F  LS +    + E   +       + +    ++      + +  
Sbjct: 172 PQDKFDYPADNSNSPFKHLSREEELTSMEYLKEFPADGPDEPVKPKSLSETPLFIVESLP 231

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
            ++    KL      +  +                          SF+     + +S  +
Sbjct: 232 ALETMAAKLHASSEIAVDLE--------------------NHHYRSFQGFVCLMQVSTRS 271

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSY 494
                    L   I   L+  F N    K+ H    D L L R +GI +    D    + 
Sbjct: 272 QDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDTGQAAR 331

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           VL        +A + Q +   T     K  + +    +   +++ ++A E+++ +L ++ 
Sbjct: 332 VLR--MERFGLAFLLQTFCGVTPD---KRYQLADWRLRPLSAEMLKYAREDTHYLLYVYD 386

Query: 555 LLRPKL-IVEKLLHVYERL 572
            ++  L   E    +Y  +
Sbjct: 387 KMKGMLRDAETTEDLYLEV 405


>gi|225560671|gb|EEH08952.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus G186AR]
          Length = 807

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 107/319 (33%), Gaps = 18/319 (5%)

Query: 255 ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGI 314
           + +  E L   D         +K L       R        A+   P V D   ++    
Sbjct: 90  VDVIDELLEKADACLDEFTGIIKRLS-PSQAERGVVLGKKTASANFPSVYDFGPSKIPKP 148

Query: 315 AIETEIDRDTTIKTSQFSSL------SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
            +      +     + F  L      +      ++ +T     +   +   +  I N +Y
Sbjct: 149 QLLFNSRPNNKDDGTPFRPLLRSKPHAITPLSTSASETSPTGTITSYKHPYETEIRNSTY 208

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP---IAIAISTLDQKDDTSFKVE 425
              V T  +   +   ET  +     + + + +  ++      IAI  L+  D  S+   
Sbjct: 209 PSSVYTISVPGKLAPFETTTATFVDTL-EGIHSMLAELKEVTEIAI-DLEHHDAHSYHGL 266

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
              + +S              +E L  L + F +   LK+ H    D + L R  G+ + 
Sbjct: 267 VCLMQISTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIV 326

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           G  D    +  L+       +  + +K+ ++  +   K  + +    +     + ++A  
Sbjct: 327 GLFDTYHAAVALN--YPKKSLKFLLEKFANFQAE---KKYQIADWRLRPLLPGMFDYARS 381

Query: 545 NSNVILQLWLLLRPKLIVE 563
           +++ +L ++  +R  LI  
Sbjct: 382 DTHYLLYIYDQIRNDLIEH 400


>gi|164663201|ref|XP_001732722.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
 gi|159106625|gb|EDP45508.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
          Length = 1109

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 32/215 (14%)

Query: 89  EMLLPQLPL-VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
           E +  Q+   ++   + FG+P +     EA+   A        +G    II+ D D+  L
Sbjct: 775 EEITQQMTAEIQALLRIFGLPYLTAP-MEAEAQCAQLAMQHLVDG----IITDDSDVF-L 828

Query: 148 VSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
              T    +     +      +  + ++ G+  E+++ L  L G   D   G+PG+G   
Sbjct: 829 FGGTPVYRNMFNNRRSVECYWMNDMHRELGLSRERLIQLAFLLG--SDYTEGLPGVGPVL 886

Query: 204 AALLLQEYGNLENIL--------------INASRIKQKKRRENILEYAETARLSRK---- 245
           A  +L  +     ++                    + K RR       +   LS +    
Sbjct: 887 AMEILSLFPGDYALVHFREWWQHVQIGADDEVHDARSKVRRRIKRALRDKVHLSEEWPDP 946

Query: 246 LVMLRT-DVPITIPLEHLILEDCNGPRLISFLKAL 279
           LV     +  +    E  +    +   + +FL+  
Sbjct: 947 LVQQAYWEPQVDDSDEPFVWGQADLDAIRAFLQEY 981


>gi|149047437|gb|EDM00107.1| rCG36059 [Rattus norvegicus]
          Length = 129

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642
           ME   I ID++ +++ SA +  +L  LE+  + ++GE+F + S  QL +ILF KLK    
Sbjct: 1   MENHKISIDKEEMERTSALLGAHLKKLEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLL 60

Query: 643 AKTKT 647
           ++ K 
Sbjct: 61  SQRKH 65


>gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans]
          Length = 741

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 106/285 (37%), Gaps = 36/285 (12%)

Query: 323 DTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQ 382
            T   T     L+ +T   NS    +          S   ++   Y +++    +   +Q
Sbjct: 144 QTQSATILRPQLTFETPVDNSHAKFRATVHHADGSTSLCDVDTHPYAELIEQFKVPT-LQ 202

Query: 383 KLETIGSASFKIITDTM------DAFHSKPIAIAIS-----TLDQKDDTSFKVETIFIDL 431
            L T       + T  +      +   +   A++        L+  D  SF+  T  + L
Sbjct: 203 LLPTEDKQYLPLETTPLTFVETVEGLDALIAALSACREVAVDLEHHDFRSFQGITCLMQL 262

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIM 490
           S   S+D        +  +  L + F + + LK+ H  K D   L + +G+ +    D  
Sbjct: 263 ST-RSEDYIVDVLRLRSHMHRLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYVANMFDTG 321

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           +    L +    H +A     +       + K  +++    +   S++  +A ++++ +L
Sbjct: 322 IA---LQTLHMPHSLAFAVDHFCGVR---LDKKYQTADWRIRPVPSEMIHYARQDTHYLL 375

Query: 551 QLWLLLRPKLIVEK--------LLHVYE--------RLDKPMIDV 579
            +   L+  L+  +        L+HVY+        R +KPM+DV
Sbjct: 376 YVHDRLKALLLHAEGRASVGNLLVHVYQDSRRLCLTRYEKPMLDV 420


>gi|240280781|gb|EER44285.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H143]
          Length = 671

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 107/319 (33%), Gaps = 18/319 (5%)

Query: 255 ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGI 314
           + +  E L   D         +K L       R        A+   P V D   ++    
Sbjct: 90  VDVIDELLEKADACLDEFTGIIKRLS-PSQAERGVVLGKKTASANFPSVYDFGPSKIPKP 148

Query: 315 AIETEIDRDTTIKTSQFSSL------SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
            +      +     + F  L      +      ++ +T     +   +   +  I N +Y
Sbjct: 149 QLLFNSRPNNKDDGTPFRPLLRSKPHAITPLSTSASETSPTGTITSYKHPYETEIRNSTY 208

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP---IAIAISTLDQKDDTSFKVE 425
              V T  +   +   ET  +     + + + +  ++      IAI  L+  D  S+   
Sbjct: 209 PSSVYTISVPGKLAPFETTTATFVDTL-EGIHSMLAELKEVTEIAI-DLEHHDAHSYHGL 266

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
              + +S              +E L  L + F +   LK+ H    D + L R  G+ + 
Sbjct: 267 VCLMQISTRDKDWIVDTLKPWREELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIV 326

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           G  D    +  L+       +  + +K+ ++  +   K  + +    +     + ++A  
Sbjct: 327 GLFDTYHAAVALN--YPKKSLKFLLEKFANFQAE---KKYQIADWRLRPLLPGMFDYARS 381

Query: 545 NSNVILQLWLLLRPKLIVE 563
           +++ +L ++  +R  LI  
Sbjct: 382 DTHYLLYIYDQIRNDLIEH 400


>gi|212528170|ref|XP_002144242.1| exosome complex exonuclease Rrp6, putative [Penicillium marneffei
           ATCC 18224]
 gi|210073640|gb|EEA27727.1| exosome complex exonuclease Rrp6, putative [Penicillium marneffei
           ATCC 18224]
          Length = 795

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 118/372 (31%), Gaps = 41/372 (11%)

Query: 245 KLVMLRTDVPITI-----PLEHLILEDCNG-----PRLISFLKALEFTKLINRVATTYDC 294
           K+    TD+   +      +E       +       +  + L    FT +I +++     
Sbjct: 63  KVATGGTDIEPPVLEDEDAIEDNWRGIVDVIDNLLEKADACLDE--FTGIIKKLSPPQQD 120

Query: 295 D--AANIEPVVLDINTTENKGIA--IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
               A+         T  + G +   + ++   T       S              P + 
Sbjct: 121 QIREASTRQQEKKFPTIYDYGPSKIPKPQLQFRTAPNNHDTSPFRPLLKSKPHAIVPLEQ 180

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE-TIGSASFKIITDTMDAFHSKPIAI 409
            L  ++   +     + Y K        ++ +          F  +  T   +   P  +
Sbjct: 181 SLRLVEAEKKPAFYPNPYEK---EIRDAKFPESAYVAAPPVDFGPVESTEAVWVDTPEGV 237

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK------------NTLTKEILSYLKKFF 457
           A    + K      V+    D+  +    S  +                +E L  L + F
Sbjct: 238 AEMVKELKKANEIAVDLEHHDMHTYYGLVSLMQISTRDKDWVVDTLQPWREDLQQLNEVF 297

Query: 458 ENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
            + + LK+ H    D + L R  G+ + G  D    +  L  G     +  + +K+  Y 
Sbjct: 298 ADPNILKVFHGSTMDIVWLQRDLGLYVVGLFDTYHAAVAL--GFPKRSLKFLLEKYARY- 354

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV---EKLLHVYERLD 573
             E  K  + +    +    ++  +A  +++ +L ++  LR +L+     K   +   L+
Sbjct: 355 --EADKKYQMADWRLRPLTEEMLRYARADTHYLLYIYDCLRNELLEKSTPKRNQIDYVLE 412

Query: 574 KPMIDVVSQMEI 585
           +   + + + E 
Sbjct: 413 RSKTEALQRYER 424


>gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386 [Cryptosporidium hominis]
          Length = 875

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 115/269 (42%), Gaps = 19/269 (7%)

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQY-PINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
            + T   N+E+ P   F  +      Y P++N   T I    D+++ +  +  +  + + 
Sbjct: 232 DEDTPNSNNEEIPNAHFNIKYSSPELYLPLSNTPLTFIKEPGDLRRMIDDILNLMESHY- 290

Query: 394 IITDTMDAFHSKPIAIAIST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
               +  + + +     ++  ++   + S+K     I LS  T         L  EI   
Sbjct: 291 ----SQSSMNEESSPFLLAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFNEI-QM 345

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L +   N   LK+ H   YD + L R + + +    D    + +L++    + + ++   
Sbjct: 346 LNELTANPKILKVLHGSDYDIIWLQRDFSVYIVNMFDTGQAARILNTP-GGYSLKNLLSI 404

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +      +I K  + +   ++   +++ E+A  +++ +L ++ +++  L    LLH ++ 
Sbjct: 405 Y---CSLDIDKRFQLADWRERPLSNELIEYARGDTHYLLYIYDIMKNLL----LLHRHKN 457

Query: 572 LDKPMIDVVSQMEITG--IQIDQDLLKQV 598
            + P++   + ME+    I +  D+++++
Sbjct: 458 TEPPVLASDAFMEVNDNLIILKPDIIERM 486


>gi|332021297|gb|EGI61676.1| Flap endonuclease 1-B [Acromyrmex echinatior]
          Length = 381

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 84/281 (29%), Gaps = 56/281 (19%)

Query: 28  RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPK 86
              DG   + + G F   +  + Q  +          +FD      ++         R +
Sbjct: 54  TTVDGETTSHLMGTFYRTIRMVEQGIKPVY-------VFDGKPPNLKSGELTKRAERRDE 106

Query: 87  IPEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIAT 123
             ++L                              +   Q  GIP ++    EA+   A 
Sbjct: 107 AQKLLQAAEEDGNVEAIDKFNRRLVKVTKTHADEAKELLQLMGIPYVDAPC-EAEAQCAA 165

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPE 177
                   G      + D D +           T  E      ++I  + V+    +   
Sbjct: 166 LVK----AGKVFATATEDMDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLAGLELNHN 221

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           + + L  + G   D    I G+G K A  L++ + +LE I+ N   +K+    E+     
Sbjct: 222 EFIDLCIMLG--CDYTNSIKGVGPKRAIELIKNHRSLEKIIENID-VKKYPIPEDW---- 274

Query: 238 ETARLSRKLVMLRTDVPITIPLEH--LILEDCNGPRLISFL 276
                + K   L    P     +   L   + +   L+ FL
Sbjct: 275 -----NYKDARLLFQEPEVSNPDDVQLKWSEPDEEGLVKFL 310


>gi|70942151|ref|XP_741275.1| flap exonuclease [Plasmodium chabaudi chabaudi]
 gi|74978262|sp|Q4XXP8|FEN1_PLACH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|56519555|emb|CAH78313.1| flap exonuclease, putative [Plasmodium chabaudi chabaudi]
          Length = 479

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 77  YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII---------ATYTYI 127
             + K    +   +   Q    +      GIP IE                   AT T  
Sbjct: 122 LEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYDMAHATATED 181

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQA 184
           A+   F   I+  + +     +       + +     +I++E V+K   +  ++ +    
Sbjct: 182 ADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDFCI 241

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L G   D    I GIG KTA  L++EY  +ENI+ N  + K +         A  + ++ 
Sbjct: 242 LCG--CDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPDNFKYVEARQSFINP 299

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFL-KALEFTK------LINRVATTYDCDAA 297
           K+        +      +   +     L +FL K   F +      +   +         
Sbjct: 300 KV--------LEKSEVKIDWCEPKIEELKTFLIKEHNFNEVRVTNYITRLLKARKVTTQR 351

Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357
            ++           K I  E++ +        +   L+D ++K+N+++    +  E+   
Sbjct: 352 RLDTFFTTCTKKSTKLIIEESQKELLKAKGKGKKRELNDNSTKLNAKKKKTNIKDEKKNT 411

Query: 358 LSQYPINNDSYTKIVNTKDIQQ 379
                + N S    V  ++  Q
Sbjct: 412 DKMDELKNKSDENFVKDEENDQ 433


>gi|116207922|ref|XP_001229770.1| hypothetical protein CHGG_03254 [Chaetomium globosum CBS 148.51]
 gi|88183851|gb|EAQ91319.1| hypothetical protein CHGG_03254 [Chaetomium globosum CBS 148.51]
          Length = 1082

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 71/250 (28%), Gaps = 46/250 (18%)

Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753
                +        T+T R         +   K  +G +++    +PP    + AD    
Sbjct: 674 PVGGFILPQIIPMGTITRRAVENTWLTASNAKKNRVGSELKAMVRAPPGYVFVGADVDSE 733

Query: 754 ELRILAHIAKITPLYQVFE------------NSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801
           EL I + I   T                      D+H   A+ I G+         R  A
Sbjct: 734 ELWIASVIGDSTFRIHGGNAIGFMTLEGTKAAGTDLHSRTAS-ILGIT--------RNDA 784

Query: 802 KTINFSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHE----------- 844
           K  N+  IYG    + A QL       +  +E      + +    G              
Sbjct: 785 KIFNYGRIYGAG-LKFAAQLLRQFNPSLSETETLQIATKLYATTKGTKTNRRVLHKRTFW 843

Query: 845 ------YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898
                 ++        +  +  T        + +NS     +     + IN  IQ S  D
Sbjct: 844 RGGTESFVFNKLEEFAEQEHPRTPVLGAGITEALNSR-FIRKGGYLTSRINWAIQSSGVD 902

Query: 899 ITRRAMISVH 908
                ++++ 
Sbjct: 903 YLHLLVVAMD 912


>gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
 gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
          Length = 379

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 31/200 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L T G  +  +  D+M AF ++     +      D   F      +D S+          
Sbjct: 14  LATAGELAVDLEADSMHAFRARL--CFLQVATPTDIFLFDTLAPGVDASL---------- 61

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSH 503
                    L     +    K  H  + D   L   GI +RG  D    + +L  G    
Sbjct: 62  ---------LAPLMADPERTKYFHAAQGDLQFLAEAGIRVRGLFDTHRAATLL--GWPKV 110

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK---- 559
            +A IA++ L     E+ K  + S    +    +++E+   +   + +L   +R      
Sbjct: 111 GLADIARERLGV---ELPKEHQQSDFSLRPLPPEMREYIANDVRYLCELGRQVREACRTA 167

Query: 560 -LIVEKLLHVYERLDKPMID 578
            ++ E LL      ++ +  
Sbjct: 168 GILEEVLLDCDRMCEEAVAR 187


>gi|83950822|ref|ZP_00959555.1| exonuclease, putative [Roseovarius nubinhibens ISM]
 gi|83838721|gb|EAP78017.1| exonuclease, putative [Roseovarius nubinhibens ISM]
          Length = 203

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 74/214 (34%), Gaps = 25/214 (11%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
                L+     +    T  +     +   + +S  D                  H  Q 
Sbjct: 9   DLPDDLDLGPIVAIDCETMGLLPHRDRLCVVQLSGGDGH---------------AHLVQV 53

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD 497
           + G+ T        L +  EN   LK+ H  ++D   +   +G          + S ++ 
Sbjct: 54  AKGQRTAPN-----LVRLLENPDVLKLFHFGRFDIAAMLNAFGAVAAPVYCTKIASKLVR 108

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           +    H + ++ Q  L     +I K ++SS        +   ++A  +   + +L   L 
Sbjct: 109 TYTDRHGLRNLLQDLLGV---DISKHQQSSDWGRAELSTAQIDYAASDVLYLHRLREALN 165

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
            +L+ E+ + + +      + + +Q+++ G   D
Sbjct: 166 VRLLREERMEMAQAC-FDFLPMRAQLDLAGWPDD 198


>gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
 gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
          Length = 1045

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 72/200 (36%), Gaps = 27/200 (13%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +    YT I + + +++   KL  +   +  +                       +  S+
Sbjct: 246 LEETPYTWIDSVRQLEELCDKLSHVEEFAMDLE--------------------HHNYRSY 285

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGI 481
           +     + +S    +D        +  +  L     N   +K+ H    D   L R +GI
Sbjct: 286 QGFVCLMQIST-RGEDFIIDTLALRSHIHMLNNVTTNPAIVKVLHGSDSDIKWLQRDFGI 344

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +    D    S VL+     +  AS+A     +   +  K  + +    +    ++ ++
Sbjct: 345 YIVNMFDTGQASRVLE-----YPSASLAFLLKYFCAVDANKKYQLADWRIRKIPEEMIKY 399

Query: 542 AIENSNVILQLWLLLRPKLI 561
           A E+++ +L ++  LR +LI
Sbjct: 400 AREDTHYLLYIYDRLRNELI 419


>gi|290559766|gb|EFD93090.1| XPG I domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
          Length = 332

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 37/193 (19%)

Query: 62  AVIFDYPAVTFRNEIYPD---------YKANRPKIPEM-------LLPQLPLV----RLA 101
             +FD  A  F+ E   +          KA      E        L      +    +  
Sbjct: 76  VFVFDGKAPRFKKETLKERESIKEEARIKAENAVTQEERAMYMRRLSRIDDYIVASSKEL 135

Query: 102 TQAFGIPAIEIQGFEADDIIA-----TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
               G+  ++    E +   A        Y A  + +   +    + +  L +       
Sbjct: 136 LDYMGVKYVQAPA-EGEAQAAWMSGKGLVYAAASQDYDTILFGAKRVIRNL-NINNKRKI 193

Query: 157 TVKE-------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           + K        E I+ ++ +KK G+  EKM+ +   TG   D   G+ GIG + A  L++
Sbjct: 194 SRKGITVQVNPEIIESDYNLKKLGVDREKMIVVALFTG--TDYNKGVDGIGPRKALNLVK 251

Query: 210 EYGNLENILINAS 222
           E  ++E +L +  
Sbjct: 252 E-NSVEKLLESYD 263


>gi|225156183|ref|ZP_03724663.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2]
 gi|224803073|gb|EEG21316.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2]
          Length = 389

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 64/198 (32%), Gaps = 32/198 (16%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  I     +  ++  L+ +   +     D M  + ++   +         D    +
Sbjct: 26  PPTYQLIDQPAQLAPFLAALDRVKEVALDTEADNMYHYQTRVCLLQFLI-----DGEVWL 80

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLHRY-GIS 482
             +   L                     LK  +E       + H   +D  +LH   G  
Sbjct: 81  VDLMTPLP--------------------LKPLWEKLATKHLVMHGSDFDLRLLHDLCGFR 120

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
            +   D ML + +L+  R    +A++  +    T   + K  + +    +    ++ ++A
Sbjct: 121 PKSLFDTMLAAQLLN--RQRIGLAALLSEHFGVT---LDKGGQKANWSKRPLTPKLLDYA 175

Query: 543 IENSNVILQLWLLLRPKL 560
             +   +  L  +L  +L
Sbjct: 176 SLDVWHLPALRDILTREL 193


>gi|83286314|ref|XP_730108.1| Flap endonuclease-1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|74882336|sp|Q7RME3|FEN1_PLAYO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|23489735|gb|EAA21673.1| flap endonuclease-1-related [Plasmodium yoelii yoelii]
          Length = 480

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 103/320 (32%), Gaps = 57/320 (17%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSR-----KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             +  +D S  +Y+   A     +        G   + I+G  +   KL++N  K     
Sbjct: 28  GRVVAIDASMSLYQFIIAIRDGDQYGNLMNESGETTSHISGLMSRTIKLMENGLK---PI 84

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEML-----------------------LPQLP 96
           +   +FD      +          R K  E+L                         Q  
Sbjct: 85  Y---VFDGAPPELKGSELEKRGEKRQKAEELLIKAKAEGNLEEIKKQSGRTVRVTKKQNE 141

Query: 97  LVRLATQAFGIPAIEIQGFEADDII---------ATYTYIAEKEGFAVTIISTDKDLMQL 147
             +      GIP IE                   AT T  A+   F   I+  + +    
Sbjct: 142 EAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATATEDADALVFGTKILIRNLNANAS 201

Query: 148 VSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
            +       + +     +I++E V+K   +  ++ +    L G   D    I GIG KTA
Sbjct: 202 SNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDFCILCG--CDYCDTIKGIGSKTA 259

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             L++EY  +ENI+ N  + K +         A  + ++ K+        +      +  
Sbjct: 260 YNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQSFINPKV--------LEKSEVKIDW 311

Query: 265 EDCNGPRLISFL-KALEFTK 283
            +     L +FL K   F +
Sbjct: 312 CEPKIEELKTFLIKEHNFNE 331


>gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 887

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/410 (12%), Positives = 127/410 (30%), Gaps = 57/410 (13%)

Query: 268 NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIK 327
           N P L          K + R  +    +     P  LD+            +       +
Sbjct: 195 NTPFLPKIFIKPNAQKPLPRALSKERRERPQDRPEDLDV-------PPALADFIHQQRTQ 247

Query: 328 TSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387
             +    +          TP    L++ Q     P+       + +  ++ +  +KL T 
Sbjct: 248 QVEQDMFAHPYQYELDHFTPPDPVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLTC 307

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +  +                          SF   T  + +S  T         L  
Sbjct: 308 QEFAVDLE--------------------HHSYRSFLGLTCLMQISTRTEDFIIDTLELRS 347

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
           E+   L +   +   +K+ H    D   L + +G+ +    D    + +L+     H + 
Sbjct: 348 EMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN--LGRHSLD 404

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            + + +       +  +++  +   +I     ++  +A ++++ +L ++  +R +L    
Sbjct: 405 HLLKLYCG-----VESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERG 459

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
                   ++P+   V+      I      LK+ +  I  +   LE  +Y       N  
Sbjct: 460 -------NEQPVQLQVAWQRSRDI-----CLKKFAKPIFTDESYLE--LYRKQKRHLN-- 503

Query: 625 SPKQLG--DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
             +QL    +LF      +  + ++  +      + +I        + I+
Sbjct: 504 -TQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGII 552


>gi|126337485|ref|XP_001376389.1| PREDICTED: similar to DNA-repair protein complementing XP-G cells
            [Monodelphis domestica]
          Length = 1696

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 34/205 (16%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 1259 QELLRLFGIPYIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFS 1313

Query: 159  KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
            K+   E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 1314 KDKFVEYYQYVDFHNQLGLDRSKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 1371

Query: 214  LENILI------NASRIKQ-------KKRRENILEYAETARLS-----RKLVMLRTDVPI 255
            LE +L        A +IK+        K ++ +       +LS       +        +
Sbjct: 1372 LEPLLKFSEWWNEAQKIKKIRPNPHDTKVKKKLR----QLQLSPGFPNPAVAEAYLKPVV 1427

Query: 256  TIPLEHLILEDCNGPRLISFLKALE 280
                   +    +  ++  F +   
Sbjct: 1428 DDSKGAFLWGKPDLEKIREFCQRYF 1452


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 97/269 (36%), Gaps = 23/269 (8%)

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T D +      + L  N ++       T+          +  +++D        +     
Sbjct: 325 TDDVEGEKRVELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAA 384

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               L+ L    IN       V  +  +  V  L       F + T  + A + K I +A
Sbjct: 385 AKAGLKMLYGVEINLVDDGTPVAYRADEPRV--LADAEYVVFDVETTGLSAVYDKVIELA 442

Query: 411 ---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
                    I   ++  D  F +  + I+L+ H + D    +   +E+    ++F   + 
Sbjct: 443 AVKMKDGQVIDQFEEMIDPGFPLSELTINLT-HITDDMVHGSKSEEEVFRLFQQFC--DG 499

Query: 462 FLKIGHNIKYDKLVL----HRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQKW--- 512
            + +GHN+ +D   L     R+G++       D + +S +L   R +H + ++A+++   
Sbjct: 500 AIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQYKVS 559

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           L +  +    +  +   +  +     + +
Sbjct: 560 LEHHHRANADAEATGYLLYALEKEAAKMY 588


>gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 681

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 70/197 (35%), Gaps = 26/197 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P+    +  +   KD++     L+++   +  +                          S
Sbjct: 202 PLEETPFKLVDEVKDLEDLAATLQSVEEFAVDLE--------------------HNQYRS 241

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
           F+  T  + +S  T         L   I  +L++ F++    K+ H   +D + L R +G
Sbjct: 242 FQGLTCLMQISTRTEDYIVDTFKLWDHIGPHLRELFKDPKKKKVMHGADHDIIWLQRDFG 301

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           I +    D    S VL        +  + + +         K  +++    +     +  
Sbjct: 302 IYVCNLFDTGQASRVL--KLERKSLEFLLKHYCGVAAD---KQYQNADWRIRPLPDVMTR 356

Query: 541 HAIENSNVILQLWLLLR 557
           +A E+++ +L ++ ++R
Sbjct: 357 YAREDTHYLLYIYDVMR 373


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
          Length = 1444

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 97/269 (36%), Gaps = 23/269 (8%)

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T D +      + L  N ++       T+          +  +++D        +     
Sbjct: 325 TDDVEGEKRVELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAA 384

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               L+ L    IN       V  +  +  V  L       F + T  + A + K I +A
Sbjct: 385 AKAGLKMLYGVEINLVDDGTPVAYRADEPRV--LADAEYVVFDVETTGLSAVYDKVIELA 442

Query: 411 ---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
                    I   ++  D  F +  + I+L+ H + D    +   +E+    ++F   + 
Sbjct: 443 AVKMKDGQVIDQFEEMIDPGFPLSELTINLT-HITDDMVHGSKSEEEVFRLFQQFC--DG 499

Query: 462 FLKIGHNIKYDKLVL----HRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQKW--- 512
            + +GHN+ +D   L     R+G++       D + +S +L   R +H + ++A+++   
Sbjct: 500 AIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQYKVS 559

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           L +  +    +  +   +  +     + +
Sbjct: 560 LEHHHRANADAEATGYLLYALEKEAAKMY 588


>gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 206

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 24/170 (14%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            S +    T  +     +   + +S+ D   D                 Q + G+N+   
Sbjct: 20  DSIAIDTETLGLQPHRDRLCVVQLSSGDGTAD---------------IIQIAKGQNSAPN 64

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                L    E++   KI H  ++D  +L   +G+         L S +  +    H + 
Sbjct: 65  -----LVTLLEDKTITKIFHFGRFDLAILAHTFGVMPDAVFCTKLASKLTRTYTDRHGLK 119

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            I  + L+     I K ++SS            E+A  +   + +L  + 
Sbjct: 120 EICSELLNVN---ISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIF 166


>gi|260950129|ref|XP_002619361.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
 gi|238846933|gb|EEQ36397.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
          Length = 738

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 72/224 (32%), Gaps = 31/224 (13%)

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           L+  + +        +   +     +Q+ ++ L +    +  +                 
Sbjct: 203 LQVNKPVPSTDWATTAAKWVDTVDALQEMIEALRSSTEIAIDLE---------------- 246

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                 D  S+   T  + +S +  QD         + L  L + F N   LK+ H    
Sbjct: 247 ----HHDYRSYYGITCLMQIS-NREQDWIVDTLALHDDLRDLNEIFANPAILKVLHGANM 301

Query: 472 DKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
           D + L R  G+ +    D    S               +  +L         S+K  +  
Sbjct: 302 DIIWLQRDLGLYIVSLFDTYHAS-------KKLGFPKFSLAYLLENFAHFKTSKKYQLAD 354

Query: 531 DKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            +I      + ++A  +++ +L ++  LR KL+      V E L
Sbjct: 355 WRIRPLTDAMMQYARADTHFLLNIYDQLRNKLLNAGQGKVQEVL 398


>gi|213403310|ref|XP_002172427.1| flap endonuclease 1-B [Schizosaccharomyces japonicus yFS275]
 gi|212000474|gb|EEB06134.1| flap endonuclease 1-B [Schizosaccharomyces japonicus yFS275]
          Length = 426

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 16/152 (10%)

Query: 100 LATQAFGIPA-IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDT 157
                  IP     +  E + + A+  +     G A  + + D D + L +      ++ 
Sbjct: 213 ALLNFLNIPVSFSPENVEGETLAASLYH----SGLASAVCTQDTDALLLGTLMIYDFFNI 268

Query: 158 VKEEKIDIEH------VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
            K+ ++          V K  G+   +      L G   D    I  IG   A  L++++
Sbjct: 269 SKKFELMPAQFISSLRVQKNLGLTYPQFFDYCLLCG--TDFCERINQIGPVRALKLIRQF 326

Query: 212 GNLENILINA--SRIKQKKRRENILEYAETAR 241
           G+L+ IL  A    I  K   ++  E    AR
Sbjct: 327 GSLDAILKYALNDPILSKILPQDYNEDLNIAR 358


>gi|110766831|ref|XP_395769.3| PREDICTED: flap endonuclease 1 [Apis mellifera]
          Length = 379

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 82/280 (29%), Gaps = 54/280 (19%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
              DG   + + G   M ++ ++   +     +   +FD      +          R + 
Sbjct: 54  TSVDGETTSHLMG---MFYRTIRLVEQGIKPVY---VFDGKPPNLKGGELAKRAEKRDEA 107

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            ++L                              +   +  GIP I+    EA+   A  
Sbjct: 108 QKLLQAAEEAGNAEDIEKFNRRLVKVTKEHADEAKQLLKLMGIPYIDAPC-EAEAQCAAM 166

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEK 178
                  G      + D D +           T  E      ++   + V++   +  ++
Sbjct: 167 VK----AGKVFATATEDMDALTFGCNILLRRLTFSEARKMPVQEFHQDKVLEGLELSHDE 222

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238
            + L  + G   D    I G+G K A  L++ +  LE I+ N    K     +       
Sbjct: 223 FIDLCIMLG--CDYTNSIKGVGPKRAIELIKTHRTLEKIIENLDTKKFPIPEDW------ 274

Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
               + K   L    P     E   L   + +   L+ +L
Sbjct: 275 ----NYKQARLLFQEPEVTDPETIDLKWIEPDEENLVKYL 310


>gi|307214986|gb|EFN89831.1| Flap endonuclease 1-B [Harpegnathos saltator]
          Length = 380

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 25/186 (13%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  GIP I+    EA+   A         G      + D D +           T 
Sbjct: 142 KQLLKLMGIPYIDAPC-EAEAQCAALVK----AGKVFATATEDMDALTFGCNVLLRRLTF 196

Query: 159 KE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            E      ++I  + V+    +   + + L  + G   D    I G+G K A  L++ + 
Sbjct: 197 SEARKLPVQEIHFDKVLGGLELNHNEFIDLCIMLG--CDYTGSIKGVGPKRAIELIKNHK 254

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH--LILEDCNGP 270
           +LE I+ N    K     +           + K   L    P     +   L   + +  
Sbjct: 255 SLEKIIENIDTKKFPVPEDW----------NYKEARLLFQEPEVSNADDIVLKWSEPDEE 304

Query: 271 RLISFL 276
            L+ FL
Sbjct: 305 DLVKFL 310


>gi|325118446|emb|CBZ53997.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
          Length = 1924

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 80/216 (37%), Gaps = 23/216 (10%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-- 155
            V    +AFG+P +   G EA+   A +T     +     +IS D D +   +        
Sbjct: 1435 VVALLRAFGVPFVTAPG-EAEATAAYFTAQNLAD----AVISDDSDALVFGAREIYRNFF 1489

Query: 156  -DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             +    E  +   +  K G+  ++++ L  L G   D   G+ GIG   A  +L+ Y +L
Sbjct: 1490 ENKKSVEMYEASFIAHKLGLDQQQLILLAMLLG--CDYTLGVKGIGIVNAVEVLRAYPSL 1547

Query: 215  ENILI-NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
            + +    A            +E A++A      V    +      L+ L   D   P + 
Sbjct: 1548 DALRAFRAWAEAPWTLG---IEAADSAE-----VRKYKEAHKNYRLQWLFPHDFPSPEVF 1599

Query: 274  SFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
               +    + L++R    +     ++E +V  +   
Sbjct: 1600 DAFE----SPLVDRSREPFSWAVPDVEAIVSIMTHA 1631


>gi|295691424|ref|YP_003595117.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
 gi|295433327|gb|ADG12499.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
          Length = 205

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK    +   LK+ H  ++D  +     G+         + S +  +    H +  + ++
Sbjct: 64  LKALLTDPAILKLFHFGRFDIAMFQLHLGVVTAPVYCTKIASKLARTYTDRHGLKDVTRE 123

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            L     E+ K+++SS        +    +A  +   +  L   L   L  E  + + +
Sbjct: 124 LLGV---ELSKAQQSSDWGSASLSADQVAYAASDVLHLHGLRQKLNAMLEREGRMALAQ 179


>gi|71735861|ref|YP_273799.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556414|gb|AAZ35625.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 377

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 5/176 (2%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D++    ++   +    LD +         I   L +   Q +   + L       L   
Sbjct: 12  DSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLINDWQPLSAL 71

Query: 457 FENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            EN   +K+ H    D  VL R  G       D  L +  L+ G S    + + Q+ L+ 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSM-GYSRLVQEVLNI 130

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
              ++ K    S  + +        +A E++  + +L+ +LRP+L  +K   + + 
Sbjct: 131 ---DLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFSILRPRLSDDKYAWLLDD 183


>gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa]
 gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa]
          Length = 228

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 68/214 (31%), Gaps = 27/214 (12%)

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           LE      Q      SY  I     ++     L      +      ++ +F      I I
Sbjct: 36  LEDYYSDHQKMSEFFSYVWIETETQLKDLAHTLSKHKVFAVDTEQHSLRSFLGFTALIQI 95

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           ST                      ++D         +++  L   F +    K+ H    
Sbjct: 96  ST---------------------RNEDYLVDTIALHDVMGVLAPVFADPTICKVFHGADN 134

Query: 472 DKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
           D L L R + I +    D      VL   +    +A + + +      ++L   +     
Sbjct: 135 DVLWLQRDFHIYVVNLFDTAKACEVL--SKPQKSLAYLLETYCGVATNKLL---QREDWR 189

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +   +++ E+A  +++ +L +   L  +L ++ 
Sbjct: 190 QRPLSAEMLEYAQTDAHYLLYIAGCLIAELKLQD 223


>gi|330877463|gb|EGH11612.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 307

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 5/176 (2%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D++    ++   +    LD +         I   L +   Q +   + L       L   
Sbjct: 12  DSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLINDWQPLSAL 71

Query: 457 FENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            EN   +K+ H    D  VL R  G       D  L +  L+ G S    + + Q+ L+ 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSM-GYSRLVQEVLNI 130

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
              ++ K    S  + +        +A E++  + +L+ +LRP+L  +K   + + 
Sbjct: 131 ---DLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFSILRPRLSDDKYAWLLDD 183


>gi|257483935|ref|ZP_05637976.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320325216|gb|EFW81283.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327790|gb|EFW83798.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330989388|gb|EGH87491.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331013134|gb|EGH93190.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 377

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 5/176 (2%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D++    ++   +    LD +         I   L +   Q +   + L       L   
Sbjct: 12  DSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLINDWQPLSAL 71

Query: 457 FENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            EN   +K+ H    D  VL R  G       D  L +  L+ G S    + + Q+ L+ 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSM-GYSRLVQEVLNI 130

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
              ++ K    S  + +        +A E++  + +L+ +LRP+L  +K   + + 
Sbjct: 131 ---DLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFSILRPRLSDDKYAWLLDD 183


>gi|242800576|ref|XP_002483617.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC 10500]
 gi|218716962|gb|EED16383.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC 10500]
          Length = 1128

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 88/271 (32%), Gaps = 34/271 (12%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            + +R    E+    +   +   + FG+P I     EA+   A    +   +G    I++ 
Sbjct: 814  RKDRRDADEVSQIMVSECQQLLRLFGLPYITAP-MEAEAQCAELVSLGLVDG----IVTD 868

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
            D D   L   T    +   + K         + K++ +   K++    L G   D   GI
Sbjct: 869  DSDTF-LFGGTRVYKNMFNQSKFVECFLSSDLEKEYALDRIKLIQFAHLLG--SDYTEGI 925

Query: 197  PGIGYKTAALLLQEYGNLENILI---------NASRIKQKKRRENILEYAETARL----- 242
            PG+G  TA  ++ E+ NLE                    ++ R+   + A    L     
Sbjct: 926  PGVGPVTALEIITEFTNLEEFRDWWMQVQMGMEIPNDPHQRFRKKFKKMATKIFLPPSFP 985

Query: 243  SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302
             R +        +            +   L SF        L+  +  + +     + PV
Sbjct: 986  DRHIDEAYLHPAVDNDPSEFQWGVPDLNGLRSF--------LMATIGWSQERTDEVLVPV 1037

Query: 303  VLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
            + D+N  E +G           T     F+ 
Sbjct: 1038 IRDMNKREQEGTQSNITRFMSGTQGAGAFAP 1068


>gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens]
          Length = 529

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFIS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCN-----VDSNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R ++           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 504 TQQLTAFQL 512


>gi|207111070|ref|ZP_03245232.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_CA4C1]
          Length = 67

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118
                +    T R E   +YK NR   P+ +L Q+P+     Q  G   +E+ GFEAD
Sbjct: 10  IVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 67


>gi|308159723|gb|EFO62244.1| Flap structure-specific endonuclease [Giardia lamblia P15]
          Length = 361

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 101/315 (32%), Gaps = 59/315 (18%)

Query: 5   NHLFLVDGSSFIYRAFY------ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58
           N +  +D S  +Y+  +                G   + + G    L K+++ +      
Sbjct: 28  NKVIAIDASVMLYQ--FITTITSGDGAALANSSGEVTSHLVGL---LAKVIRMAEAGIKP 82

Query: 59  SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ------------------------ 94
                +FD      +       +  R      L  Q                        
Sbjct: 83  ---IFVFDGKPPEDKQGELEKRRQAREAA--ELEQQKAEEEGNLERAKQLSRRTVKVTQQ 137

Query: 95  -LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
                       GIP I   G EA+            EG    + S+D D++   SP   
Sbjct: 138 HCKQAERLLDVLGIPYIIAAG-EAEAQCVAMAKERLCEG----VASSDLDVLAFGSPCLI 192

Query: 154 LYDTVKEEK----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                  ++    I++  V+K+ G   ++ + L  L G   D    + GIG KTA  L+ 
Sbjct: 193 RNLAQGGDREIMEINLNIVLKELGFSYDEFLDLCILCG--CDYANSLEGIGPKTAYKLIV 250

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           ++ ++E +L       Q K  E  L +      +R+L      +      + L  +  N 
Sbjct: 251 KHRSIEEVLAA----DQGKLAEKALNWP--YVRARELFKNPEIIDPKEIKKTLKWKPVNR 304

Query: 270 PRLISFL-KALEFTK 283
              + FL + +EF +
Sbjct: 305 SEAMQFLVEEMEFDR 319


>gi|126328720|ref|XP_001364275.1| PREDICTED: similar to exosome component 10, isoform 2 [Monodelphis
           domestica]
          Length = 836

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 123/364 (33%), Gaps = 25/364 (6%)

Query: 265 EDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDT 324
            + N  +     + L    +I       +    +  P V  I    N    +   + ++ 
Sbjct: 138 GEYNKKKQSETFRLLHAKNIIRPQLKFREKVDNSNTPFVPKIFIKPNAQKPLAQALTKER 197

Query: 325 TIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL 384
             +  +   L    +  +     +   +E+    +        +  I +    +  +Q  
Sbjct: 198 RERQERPEDLDVPPALADFLYQQRTQQIEQ-DMFAHPYQYELDHFAIPDEVLQKPQIQMY 256

Query: 385 ETIGS--ASFKIITDTMDAFHSKPI-----AIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
           + +G     F    D +   + K +      + +   +     SF   T  + +S  T +
Sbjct: 257 KPVGETPCHFVTTLDALVELNEKLLNCKDFGVDL---EHHSYRSFLGLTCLMQISTRT-E 312

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
           D        +  L  L + F +   +K+ H    D   L + +G+ +    D    + +L
Sbjct: 313 DFIIDTLELRSDLYILNESFTDPSIVKVFHGADMDIEWLQKDFGLYVVNMFDTHQAARIL 372

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWL 554
           +     H +  + + + +     +  +++  +   +I     ++  +A  +++ +L ++ 
Sbjct: 373 N--LGRHSLDHLLKLYCN-----VESNKQYQLADWRIRPLPEEMFNYARHDTHYLLYIYD 425

Query: 555 LLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            +R  L           + + +   D+  +  I  I ++   L+    +  K+L + +  
Sbjct: 426 KMRSDLWDRANGQPAQLQVVWQRSKDICLKRFIKPIFMEDSYLELYRKQ-KKHLNTQQLT 484

Query: 613 IYDL 616
            + L
Sbjct: 485 AFQL 488


>gi|68490644|ref|XP_710869.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
 gi|46432124|gb|EAK91626.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
          Length = 786

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 83/245 (33%), Gaps = 33/245 (13%)

Query: 332 SSLSDQTSKINSEQTP-QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
                Q  +   +  P     L +   +     +      +   +++Q+ VQ+L+     
Sbjct: 195 PPFYAQPYEYEIDNQPYPDAILAKSDAIPPKDWSTTKAIWVDTVEELQKMVQELKKSTEI 254

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +  +                       D  S+      + +S +  QD        ++ L
Sbjct: 255 AVDLE--------------------HHDYRSYYGIVCLMQIS-NREQDWIIDTLALRDDL 293

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           + L + F +   +K+ H    D + L R  G+ +    D    S  L  G     +A + 
Sbjct: 294 TVLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRAL--GFPRFSLAYLL 351

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKL-IVEKLL 566
           + +  +       S++  +   +I      +  +A  +++ +L ++  L+ KL   EKL 
Sbjct: 352 EVYAHFKT-----SKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKLS 406

Query: 567 HVYER 571
            V   
Sbjct: 407 QVLYD 411


>gi|30044002|ref|NP_835599.1| similar to DNA polymerase I [Rhodothermus phage RM378]
          Length = 318

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 49/170 (28%), Gaps = 43/170 (25%)

Query: 63  VIFDYPAVTFRNEIYPDYKANR----------PKIPEMLLPQLPLVRLATQAF------- 105
           +I DY     R ++ P YK +R             P  L                     
Sbjct: 71  IIDDYDRHPLRKKLLPQYKEHRYEYIEGKYGVVPFPGFLKYLKFHFEDLRFKMRDLGITD 130

Query: 106 ---------------------GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDL 144
                                      I  +EADD+IA       +    V I+STDKD 
Sbjct: 131 FKYALAISLFYNRVMLRDFLKNFTCYYIAEYEADDVIAHLAREIARSNIDVNIVSTDKDY 190

Query: 145 MQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
            QL                  +    ++G      + ++AL GD  DNIP
Sbjct: 191 YQLWDEEDIRERVYINSLSCSDVKTPRYG-----FLTIKALLGDKSDNIP 235


>gi|330959294|gb|EGH59554.1| ribonuclease D [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 377

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   +     + +++   +       +D F+  PIA  +   D K           
Sbjct: 6   HWIRDDDSLALHCAQWQSLPFVALDTEFMRVDTFY--PIAALLQIGDGKSAWLI------ 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + L       L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLLINDWRPLSALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L+    ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLNI---DLPKGETRSDWLQRPLSETQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFAILRPRLSDDKYAWLLDD 183


>gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
          Length = 364

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 92/255 (36%), Gaps = 29/255 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ +      +       M  ++ +   + I+T +              
Sbjct: 2   IINTNKQLNDVIEIISNTSQIAVDTEFYWMRTYYPELCLVQIATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL     S LK  FEN+   KI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLKDLDFSKLKDIFENKDIQKIIHSATNDIPIIKRFFNCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   ++   + ++ ++ L     E+ K  + S   ++    +   +AI++   
Sbjct: 100 TQLAAAFL-GFQTQSSLKTLLKEILDI---EMEKESQFSDWRNRPLTQKQLNYAIKDVEY 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           ++QL   L+ +LI  +    +E+ +   I       I  I      +++   E ++    
Sbjct: 156 LIQLKEYLQQQLIKSEYQGFFEQ-ELIEIQKTQFNSIENIHTKIGNIQKF-DEKTQKNAI 213

Query: 609 LEENIYDLSGEKFNL 623
           L     ++  ++ N+
Sbjct: 214 LIAQWREMIAQEKNI 228


>gi|78485923|ref|YP_391848.1| 3'-5' exonuclease [Thiomicrospira crunogena XCL-2]
 gi|78364209|gb|ABB42174.1| ribonuclease D [Thiomicrospira crunogena XCL-2]
          Length = 385

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 26/206 (12%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I    D+  + + L+T    +        D + S    I I T D +         
Sbjct: 2   DYKIINQQADLDAFCELLKTCPWIALDTEFVRTDTYFSILSLIQIQTHDGQA-------A 54

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG 485
           I   L++              E L+ L     N +  K+ H+ + D  VL++  G     
Sbjct: 55  IIDPLAI--------------EDLTALWSIISNPNVRKVFHSARQDIEVLYQVSGQMPIS 100

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +    L       D+A +A+   +     + K +  +    +    +  E+AI +
Sbjct: 101 IYDTQIACLFLQ----HGDLAGLARVVKAELNFTLEKDQTRTNWQQRPLTDKQLEYAIND 156

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER 571
              +  L+  L+ +L  ++   + E 
Sbjct: 157 VRYLAPLYEKLQAELTEQQQAALEED 182


>gi|311875216|emb|CBX44475.1| DNA polymerase A, part A [Erwinia phage phiEa1H]
 gi|311875337|emb|CBX45078.1| DNA polymerase A, part A [Erwinia phage phiEa100]
          Length = 621

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 13/118 (11%)

Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747
            P+       RV        T T R+      L NIP +      +R  FI+   KK++ 
Sbjct: 509 WPSLPEDGEWRVPAIAISIGTSTFRMRHRV--LVNIPSRG--LYPLRDLFIASKGKKVLG 564

Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
            D + +ELR+LAH        +V  +  DIH          N EK    +R  AKT N
Sbjct: 565 CDGAGLELRVLAHFMNDPEYSEVVLHG-DIHT--------HNQEKAGLPLRDMAKTFN 613


>gi|126328718|ref|XP_001364197.1| PREDICTED: similar to exosome component 10, isoform 1 [Monodelphis
           domestica]
          Length = 861

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 123/364 (33%), Gaps = 25/364 (6%)

Query: 265 EDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDT 324
            + N  +     + L    +I       +    +  P V  I    N    +   + ++ 
Sbjct: 138 GEYNKKKQSETFRLLHAKNIIRPQLKFREKVDNSNTPFVPKIFIKPNAQKPLAQALTKER 197

Query: 325 TIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL 384
             +  +   L    +  +     +   +E+    +        +  I +    +  +Q  
Sbjct: 198 RERQERPEDLDVPPALADFLYQQRTQQIEQ-DMFAHPYQYELDHFAIPDEVLQKPQIQMY 256

Query: 385 ETIGS--ASFKIITDTMDAFHSKPI-----AIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
           + +G     F    D +   + K +      + +   +     SF   T  + +S  T +
Sbjct: 257 KPVGETPCHFVTTLDALVELNEKLLNCKDFGVDL---EHHSYRSFLGLTCLMQISTRT-E 312

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
           D        +  L  L + F +   +K+ H    D   L + +G+ +    D    + +L
Sbjct: 313 DFIIDTLELRSDLYILNESFTDPSIVKVFHGADMDIEWLQKDFGLYVVNMFDTHQAARIL 372

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWL 554
           +     H +  + + + +     +  +++  +   +I     ++  +A  +++ +L ++ 
Sbjct: 373 N--LGRHSLDHLLKLYCN-----VESNKQYQLADWRIRPLPEEMFNYARHDTHYLLYIYD 425

Query: 555 LLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            +R  L           + + +   D+  +  I  I ++   L+    +  K+L + +  
Sbjct: 426 KMRSDLWDRANGQPAQLQVVWQRSKDICLKRFIKPIFMEDSYLELYRKQ-KKHLNTQQLT 484

Query: 613 IYDL 616
            + L
Sbjct: 485 AFQL 488


>gi|330974089|gb|EGH74155.1| ribonuclease D [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 377

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F+     IA         +++ +    
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYP----IAALLQIGDGQSAWLI---- 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + L       L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLLINDWRPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLDI---DLPKGETRSDWLQRPLSETQVSYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFTILRPRLSDDKYAWLLDD 183


>gi|145592541|ref|YP_001154543.1| flap endonuclease-1 [Pyrobaculum arsenaticum DSM 13514]
 gi|166973704|sp|A4WNC4|FEN_PYRAR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|145284309|gb|ABP51891.1| flap endonuclease 1 [Pyrobaculum arsenaticum DSM 13514]
          Length = 346

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 82/251 (32%), Gaps = 61/251 (24%)

Query: 16  IYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASHFAVIFD 66
            Y A Y      R+ DG P         + I+G F   +  +    +          +FD
Sbjct: 32  AYNALYQFLASIRQPDGTPLMDRAGRITSHISGLFYRTINLMEAGIKPVY-------VFD 84

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLL-----------------------PQLPLVRLATQ 103
                F+     + +  + K  E L+                         +   +    
Sbjct: 85  GKPPEFKLAEIEERRKAKEKATEELVRAIKEGRRDEVAKYAKRAIFLTNEMVEDAKKLLT 144

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEK 162
             G+P ++    E +   A         G    + S D D +   SP       T  + K
Sbjct: 145 YMGVPWVQAPS-EGEAQAAYMARR----GHCWAVGSQDYDSLLFGSPRLVRNLATSPKRK 199

Query: 163 IDIE------HVIKKWGI-------PPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL 208
           +  E       +I+   +         E+++ L  L G   D  P G+PGIG + A  L+
Sbjct: 200 VGDEVVELSPEIIELDAVLKSLRLRSREQLIDLAILLG--TDYNPDGVPGIGPQRALKLI 257

Query: 209 QEYGNLENILI 219
            E+G+LE +L 
Sbjct: 258 WEFGSLEKLLD 268


>gi|238879034|gb|EEQ42672.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 786

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 84/245 (34%), Gaps = 33/245 (13%)

Query: 332 SSLSDQTSKINSEQTP-QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
                Q  +   +  P     L +   +     ++     +   +++Q+ VQ+L+     
Sbjct: 195 PPFYAQPYEYEIDNQPYPDAILAKSDPIPPKDWSSTKAIWVDTVEELQKMVQELKKSTEI 254

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +  +                       D  S+      + +S +  QD        ++ L
Sbjct: 255 AVDLE--------------------HHDYRSYYGIVCLMQIS-NREQDWIIDTLALRDDL 293

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           + L + F +   +K+ H    D + L R  G+ +    D    S  L  G     +A + 
Sbjct: 294 TVLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRAL--GFPRFSLAYLL 351

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKL-IVEKLL 566
           + +  +       S++  +   +I      +  +A  +++ +L ++  L+ KL   EKL 
Sbjct: 352 EVYAHFKT-----SKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKLS 406

Query: 567 HVYER 571
            V   
Sbjct: 407 QVLYD 411


>gi|74824687|sp|Q9GZ01|FEN1_PLAFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|9885425|gb|AAG01445.1| flap endonuclease-1 [Plasmodium falciparum]
          Length = 650

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 72/465 (15%), Positives = 136/465 (29%), Gaps = 79/465 (16%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             +  +D S  +Y+   A              G   + I+G  +   +L++N  K     
Sbjct: 28  GRIIAIDASMSLYQFIIAIRDSEQYGNLTNESGETTSHISGLMSRSIRLMENGLK---PI 84

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEML-----------------------LPQLP 96
           +   +FD      +          R K  E+L                         Q  
Sbjct: 85  Y---VFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTRKQNE 141

Query: 97  LVRLATQAFGIPAIEIQGFEADDII----ATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
             +      GIP IE                  +    E     +  T   +  L +  T
Sbjct: 142 EAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAT 201

Query: 153 CLYDTVKE--------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
              +  K          +I++E V+K   +  ++ +    L G   D    I GIG KTA
Sbjct: 202 SNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCG--CDYCDTIKGIGSKTA 259

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             L++EY  +E I+ N  + K +       + A  + ++   V+ + D+ I         
Sbjct: 260 YNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKSFINPN-VLPKEDIKID-------W 311

Query: 265 EDCNGPRLISF------LKALEFTKLINRVAT-----------------TYDCDAANIEP 301
            +     L  F         L  T  INR+                   T       +E 
Sbjct: 312 NEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFTACTKKSTKLIVEE 371

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
              +      KG    T  D++      +    ++       ++  + +  E+ +   + 
Sbjct: 372 TKKEQTLPARKGKKRPTAGDKNKQKAVKRKIEQANANGHHKMKEENKSVDNEKNEDGIKS 431

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
             N  +   I +  D +    +       +      ++D F S  
Sbjct: 432 VDNEKNEDGIKSVDDEKNLDDEKNLDDEKNKDDEKKSLDNFSSNL 476


>gi|66044808|ref|YP_234649.1| ribonuclease D [Pseudomonas syringae pv. syringae B728a]
 gi|63255515|gb|AAY36611.1| Ribonuclease D [Pseudomonas syringae pv. syringae B728a]
          Length = 377

 Score = 55.4 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F+     IA         +++ +    
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYP----IAALLQIGDGQSAWLI---- 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + L       L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLLINDWRPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLDI---DLPKGETRSDWLQRPLSETQVSYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFTILRPRLSDDKYAWLLDD 183


>gi|85000709|ref|XP_955073.1| 3'-5' exonuclease [Theileria annulata strain Ankara]
 gi|65303219|emb|CAI75597.1| 3'-5' exonuclease, putative [Theileria annulata]
          Length = 790

 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 116/349 (33%), Gaps = 39/349 (11%)

Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336
           K     + ++ +      +       +  +  +E+K  +     +     K +  S    
Sbjct: 392 KIYPKHEFLSIIDEPIHVNPHLYSQELNSLFWSEDKKNSTHQGFNILGGTKNNLLS---- 447

Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396
               +N        F       ++   N   Y  I N  D    + KL+     S  +  
Sbjct: 448 --PNVNGVNNCGVSFSSLNGSHNETVQNKIDYKLIDNESDFNAMLDKLKNSRILSMDVEH 505

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
              + +      + +ST  Q++      +                        ++ L + 
Sbjct: 506 HDTETYRGFICLLQLST-PQENYIIDPFKIFGK--------------------MNKLNRL 544

Query: 457 FENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
             +   LKI H    D + L R + I +    D    + VL+    S  +A + QK+ + 
Sbjct: 545 TTDPKILKIMHGACNDVIWLQRDFNIFVVNLFDTREAAIVLNLPEQS--LAKLVQKYFNI 602

Query: 516 TRKEILKSRKSSIPIDKIS------DSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLH 567
              +  +    S   + ++      D ++ ++A  +S+ ++ L+  L+ ++    +  + 
Sbjct: 603 KLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYACCDSHYLIPLYNTLKDEILSKEDGRVK 662

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           + + ++      + Q    G +I +   K +S      +  L+   Y+L
Sbjct: 663 IIQVMNNGRETCLKQYVDRGPEIYKKF-KSISKRHKIKIPELDFVSYNL 710


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 98/269 (36%), Gaps = 23/269 (8%)

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T D +      + L  N ++       T+          +  +++D        +     
Sbjct: 325 TDDVEGEKRVELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAA 384

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               L+ L    IN       V  +  +  V  L       F + T  + A + K I +A
Sbjct: 385 DKAGLKMLYGVEINLVDDGTPVAYRAEEPRV--LADAEYVVFDVETTGLSAVYDKVIELA 442

Query: 411 ---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
                    I   ++  D  F +  + I+L+ H + D    +   +E+    ++F   + 
Sbjct: 443 AVKMKDGQVIDQFEEMIDPGFPLSELTINLT-HITDDMVHGSKSEEEVFRLFQQFC--DG 499

Query: 462 FLKIGHNIKYDKLVL----HRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQKW--- 512
            + +GHN+ +D   L     R+G++       D + +S +L   R +H + ++A+++   
Sbjct: 500 AIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQYKVS 559

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           L +  +  + +  +   +  +     + +
Sbjct: 560 LEHHHRANVDAEATGYLLYALEKEAAKMY 588


>gi|255262197|ref|ZP_05341539.1| 3'-5' exonuclease [Thalassiobium sp. R2A62]
 gi|255104532|gb|EET47206.1| 3'-5' exonuclease [Thalassiobium sp. R2A62]
          Length = 203

 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 73/214 (34%), Gaps = 25/214 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   I +S  D                + H  
Sbjct: 7   QNDLPDGLDLGPVVAIDCETMGLNPHRDRLCVIQMSGGDS---------------NAHII 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           Q S G+          L     N   LK+ H  ++D   +   +G          + S +
Sbjct: 52  QVSKGQTEAPN-----LTAMLTNPDVLKLFHFGRFDIAAMQNAFGAVTAPVYCTKIASKM 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H + ++ Q+ +     +I K ++SS    +   +   ++A  +   + +L   
Sbjct: 107 VRTYTDRHGLKNLLQELIGV---DISKQQQSSDWGSQTLTNAQLDYAASDVLYLHKLRTE 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           L  +L+ E  + + +      + + +Q+++ G  
Sbjct: 164 LNARLVREGRMEMAQAC-FDFLPMRAQLDLEGWP 196


>gi|86608835|ref|YP_477597.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557377|gb|ABD02334.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 210

 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 28/221 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +        + L      +    T  +     +   + I+    +             
Sbjct: 8   LCDEDLTPAVAKALAREPYLAVDTETMGLIPQRDRLCVVQIANSAGE------------- 54

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
             V   + S G          +L +        KI H  ++D  +L    GI        
Sbjct: 55  --VVLLRLSRGVKQAP-----FLAQLLMAPSIEKIFHYARFDLAMLRYHLGIRAWPVFCT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQEHAIENSN 547
            + S +  +  S H +  +  +       E+ K+ +SS    +  +S  Q+ E+A  +  
Sbjct: 108 KIASKLARTYTSKHGLKDVVSELCGV---ELNKTAQSSDWGAVHALSAEQL-EYAANDVR 163

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            ++ +   L   L  E+   + ++     +  + ++++ G 
Sbjct: 164 YLIPVRHKLAEMLRREERWELAQQC-FQHLPTLVELDLLGF 203


>gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 205

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           S LKK   +    KI H  ++D   +  Y GI         + S +  +    H +  + 
Sbjct: 61  SNLKKILSDLSITKIFHFARFDITAIRYYLGIWAIPCYCTKIASKLARTYTDHHGLKELC 120

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            + L      + K ++SS    ++  S+   +A  +   +  L   L   L  E    +
Sbjct: 121 NELLGIK---LNKVQQSSDWGKEVLTSEQLNYAASDVIHLHALKSKLDAMLERENKQEL 176


>gi|330975291|gb|EGH75357.1| ribonuclease D [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 377

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F+     IA         +++ +    
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYP----IAALLQIGDGQSAWLI---- 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + L       L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLLINDWRPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLDI---DLPKGETRSDWLQRPLSETQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFTILRPRLSDDKYAWLLDD 183


>gi|221127142|ref|XP_002166917.1| PREDICTED: similar to DNA polymerase gamma [Hydra magnipapillata]
          Length = 592

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 27/172 (15%)

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752
           +     +      A T+T R         + P+   +G +++    +PP   L+ AD   
Sbjct: 194 DDGRGVILPQVVTAGTVTRRSVEATWLTASNPMFNRIGSELKSLIRTPPGYVLVGADVDS 253

Query: 753 IELRIL-----AHIAKITP--------LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799
            EL I      A  + +          L     +  D+H   A  I            R 
Sbjct: 254 QELWIASILGDAMFSNMHGSTALSWMTLQGKKSDRTDLHSKTADTI---------GMSRD 304

Query: 800 HAKTINFSIIYGISPF-----RLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846
            AK  N+  IYG          +     I  ++A +   + +    GI  Y+
Sbjct: 305 QAKVFNYGRIYGAGEKFAVRLLMQFNHNISLAQAEEKAAKLYATTKGIKSYL 356


>gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 659

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 42/223 (18%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID--------LSVH 434
           +L  +    F   T  +D    + + IA   + +   T  + +T+            +VH
Sbjct: 447 RLADLTCVVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVH 506

Query: 435 TSQDST-GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRG-FED 488
              D+           L+    F E+   + + HN  +D   L R     G        D
Sbjct: 507 GITDAMVAGAPDMTAALTAFHHFAED--TVLVAHNAPFDMGFLRRAVPETGAHFDNQVLD 564

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            +L+S +L    + H + ++ ++                  +  +   + +  A+ ++  
Sbjct: 565 TVLLSAMLWGQSAPHSLDALTER------------------LGIVIPPEARHTAMGDARA 606

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
             + +L L   L  + L            DV+++       +D
Sbjct: 607 TAEAYLRLIAALEAKGLDR--------FEDVLAEARRHRRLVD 641


>gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 206

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 24/170 (14%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            S +    T  +     +   + +S  D   D                 Q + G+N+   
Sbjct: 20  DSIAIDTETLGLQPHRDRLCVVQLSPGDGTAD---------------IIQIAKGQNSAPN 64

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                L    E++   KI H  ++D  +L   +G+         L S +  +    H + 
Sbjct: 65  -----LVTLLEDKTITKIFHFGRFDLAILAHTFGVMPDAVFCTKLASKLTRTYTDRHGLK 119

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            I  + L+     I K ++SS            E+A  +   + +L  + 
Sbjct: 120 EICSELLNVN---ISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIF 166


>gi|91085979|ref|XP_971921.1| PREDICTED: similar to flap endonuclease-1 [Tribolium castaneum]
 gi|270009935|gb|EFA06383.1| hypothetical protein TcasGA2_TC009261 [Tribolium castaneum]
          Length = 381

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 27/187 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTI-ISTDKDLMQLVSPTTCLYDT 157
           +      G+P IE    EA+   A         G  V    + D D +   S     + T
Sbjct: 142 KQLLTLMGVPYIEAPC-EAEAQCAAMVK-----GGLVYATATEDMDALTFGSNVLLRHLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++I +  V++   +  +  V L  L G   D    I GIG K A  L++++
Sbjct: 196 FSEARKMPVQEIHLSKVLEGLELDQKAFVDLCILLG--CDYTESIRGIGPKRAIELIKKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE--HLILEDCNG 269
            ++E IL N   +K+    EN          + +      + P  +      L   D + 
Sbjct: 254 KSIEEILKNID-VKKYPPPENW---------NYEGARQLFEEPEVMDAAKIELKWTDPDE 303

Query: 270 PRLISFL 276
             ++ FL
Sbjct: 304 EGMVKFL 310


>gi|68490669|ref|XP_710857.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
 gi|46432110|gb|EAK91613.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
          Length = 785

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 83/245 (33%), Gaps = 33/245 (13%)

Query: 332 SSLSDQTSKINSEQTP-QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
                Q  +   +  P     L +   +     +      +   +++Q+ VQ+L+     
Sbjct: 195 PPFYAQPYEYEIDNQPYPDAILAKSDAIPPKDWSTTKAIWVDTVEELQKMVQELKKSTEI 254

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +  +                       D  S+      + +S +  QD        ++ L
Sbjct: 255 AVDLE--------------------HHDYRSYYGIVCLMQIS-NREQDWIIDTLALRDDL 293

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           + L + F +   +K+ H    D + L R  G+ +    D    S  L  G     +A + 
Sbjct: 294 TVLNEVFADPDIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRAL--GFPRFSLAYLL 351

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKL-IVEKLL 566
           + +  +       S++  +   +I      +  +A  +++ +L ++  L+ KL   EKL 
Sbjct: 352 EVYAHFKT-----SKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKLS 406

Query: 567 HVYER 571
            V   
Sbjct: 407 QVLYD 411


>gi|330900086|gb|EGH31505.1| ribonuclease D [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 377

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F+     IA         +++ +    
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYP----IAALLQIGDGQSAWLI---- 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + L       L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLLINDWRPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLDI---DLPKGETRSDWLQRPLSETQITYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFTILRPRLSDDKYAWLLDD 183


>gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 468

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 45/346 (13%)

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +L  L T++P+ + L     +      +    L  L   +L   +   ++ +  N     
Sbjct: 140 RLTALLTEIPVAMILVSRRGQIVLYDGQAAEVLSQLHVPRLNAPLTDFFEAEGLNAAVGR 199

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           +     E +  A  T+  +    +             I   +T      ER        +
Sbjct: 200 MHKTGREVRFTAEGTDGAQSYDARLKPMDG-GGYMMVIEGAETHMAPEAERPLVYDFDLL 258

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS------TLDQK 417
            +D+   + +T         L  +    F   T  +     + + I          +  +
Sbjct: 259 THDAPAAVEDTP--------LSALSYTVFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGE 310

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTK-EILSYLKKF--FENEHFLKIGHNIKYDKL 474
                    I I  S       T      K +I    ++F  F     + + HN  +D  
Sbjct: 311 VLDLLVDPGIPIPASSSRVHKVTDAMVAGKPDIGEAGRRFHRFAKGSVI-VAHNAPFDMA 369

Query: 475 VLHRY----GISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
            L R+    G+       D +L+S VL     +H + ++ Q+                  
Sbjct: 370 FLRRHRDRMGVEWDHPILDTVLLSAVLFGASETHTLDALCQRL----------------- 412

Query: 530 IDKISDSQVQEH-AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              +   Q   H A+ ++N   Q+ +++ P L    +    E L++
Sbjct: 413 --GVEIPQALRHTALGDANATAQVLVMMLPMLAARGMRTFGEVLEE 456


>gi|254419186|ref|ZP_05032910.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3]
 gi|196185363|gb|EDX80339.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3]
          Length = 204

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK+   +    KI H  ++D  + L   G+  R      + S +  +    H +  + ++
Sbjct: 63  LKRLLTDPAVTKIFHFGRFDIGMFLLHLGVETRPVYCTKIASKLARTYTDRHGLKDVVRE 122

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            +       L   + S        +Q Q ++A  +   +      L   L  E    +
Sbjct: 123 TVGVD----LSKAQQSSDWGAAELTQAQLDYAASDVLYLHAARAKLDLMLAREGRAEL 176


>gi|302187116|ref|ZP_07263789.1| ribonuclease D [Pseudomonas syringae pv. syringae 642]
          Length = 377

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F+     IA         +++ +    
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYP----IAALLQIGDGQSAWLI---- 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + L       L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLLINDWRPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLDI---DLPKGETRSDWLQRPLSETQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LRP+L  +K   + + 
Sbjct: 160 HLAELFTILRPRLSDDKYAWLLDD 183


>gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476]
 gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 206

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 24/172 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
              + +    T  +     +   + IS  D   D                 Q + G+   
Sbjct: 18  KTDAIAIDTETLGLQPHRDRLCVVQISPGDGTAD---------------IIQIAKGQKNA 62

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L K  E+    KI H  ++D  +L   +G+         + S +  +    H 
Sbjct: 63  PN-----LVKLLEDNAVTKIFHFGRFDLAILAHTFGVMPEAVFCTKIASKLTRTYTDRHG 117

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           +  I  + L+     I K ++SS    +       E+A  +   + +L  + 
Sbjct: 118 LKEICNELLNVN---ISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKAIF 166


>gi|302688649|ref|XP_003034004.1| hypothetical protein SCHCODRAFT_81803 [Schizophyllum commune H4-8]
 gi|300107699|gb|EFI99101.1| hypothetical protein SCHCODRAFT_81803 [Schizophyllum commune H4-8]
          Length = 452

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 15/131 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            R   +  GIP +E    EA+   A         G  V    S D D +   +P    + 
Sbjct: 142 CRRLLKLMGIPYVEAPS-EAEAQCAELAR-----GGKVYAAGSEDMDTLTFNAPILFRHL 195

Query: 157 TVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           TV E K      I+++  ++   +     V L  L G   D +  I G+G K+A  L++E
Sbjct: 196 TVSEAKKQPILEINLKAALEGLDMDLSMFVDLCILLG--CDYLEPIKGVGPKSALKLVRE 253

Query: 211 YGNLENILINA 221
           +G L  ++ + 
Sbjct: 254 HGGLAGVVEHL 264


>gi|302676249|ref|XP_003027808.1| hypothetical protein SCHCODRAFT_60951 [Schizophyllum commune H4-8]
 gi|300101495|gb|EFI92905.1| hypothetical protein SCHCODRAFT_60951 [Schizophyllum commune H4-8]
          Length = 548

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 14/202 (6%)

Query: 99  RLATQAFGIPAIEIQG-FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           +    A G+P ++  G FEA+ + +        +     ++S D D++   +P       
Sbjct: 350 KEILAALGVPCVDATGAFEAEALASAMVLGGLAD----YVVSEDTDVLVYGAPLLRNLSN 405

Query: 158 VKE-EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
            +    +    +     +  ++ V    L G   D    I  +G   A   ++ +G++E 
Sbjct: 406 RQGPLVLLPASLWDLLHLSRKEYVDFALLLG--TDFSQRIKNVGPARALKFIRTHGSIER 463

Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           I        +   R  + EY  +  ++R    +   +P     E L   + +  ++   L
Sbjct: 464 I---VDEETKYPPRIPVEEYLHSVAVAR---AIFATLPALPAPEALQQGEMDEVQVNEVL 517

Query: 277 KALEFTKLINRVATTYDCDAAN 298
              +    +      YD     
Sbjct: 518 HKYDLETYLRDDEWDYDSGVGT 539


>gi|126724660|ref|ZP_01740503.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
 gi|126705824|gb|EBA04914.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
          Length = 203

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 66/194 (34%), Gaps = 24/194 (12%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
           +     L+     +    T  ++    +   I +S  D                + H  Q
Sbjct: 8   RDLPDGLDLGPVVAIDCETMGLNPIRDRLCLIQMSNGDG---------------NAHMVQ 52

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
              G+          L +   + + LK+ H  ++D   +H  +G+         + S ++
Sbjct: 53  VEKGQTEAPN-----LCRMLADPNVLKLFHFGRFDIAAMHNAFGVLTEPVYCTKIASKMV 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H + ++ Q+ L     +I K ++ S    +       ++A  +   + +L   L
Sbjct: 108 RTYTDRHGLRNLLQELLKV---DISKFQQMSDWGAETLTKAQLDYAASDVLHLHRLRDRL 164

Query: 557 RPKLIVEKLLHVYE 570
              L+ E  + + +
Sbjct: 165 NELLVREGRMELAQ 178


>gi|116249870|ref|YP_765708.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254518|emb|CAK05592.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 208

 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 24/182 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
               G+ +    T  +     +   + +S  D   D                 + + G+ 
Sbjct: 18  ARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTAD---------------IIRIAAGQK 62

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSS 502
                    L    E+    KI H  ++D  VL H + ++        + S ++ +    
Sbjct: 63  EAPN-----LVALLEDPTHQKIFHYGRFDIAVLFHTFSVTTTPVFCTKIASRLIRTYTDR 117

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           H +    ++ L     ++ K+++SS    +       E+A  +   +  L   L  +LI 
Sbjct: 118 HGLKDNLKEMLDV---DVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIR 174

Query: 563 EK 564
           + 
Sbjct: 175 DG 176


>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 857

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 73/205 (35%), Gaps = 26/205 (12%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
             + +S   +    +  +   KD+++   KL  +   +  +                   
Sbjct: 215 NAEPVSPPSLECTPFKLVKEVKDLKELAAKLRAVNEFAVDLE------------------ 256

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                  SF+  T  + +S  T         L   +  YL++ F++    K+ H    D 
Sbjct: 257 --HNQYRSFQGLTCLMQISTRTEDFIIDTLKLRIHVGPYLREVFKDPTKRKVMHGADRDI 314

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           + L R +GI +    D    S VL      + +  + + +   T     K  +++    +
Sbjct: 315 IWLQRDFGIYVCNLFDTGQASRVL--KLERNSLEHLLRHFCGITAN---KEYQNADWRLR 369

Query: 533 ISDSQVQEHAIENSNVILQLWLLLR 557
               ++  +  E+++ +L ++ L+R
Sbjct: 370 PLTDEMLRYGREDTHYLLYIYDLMR 394


>gi|52425412|ref|YP_088549.1| ribonuclease D [Mannheimia succiniciproducens MBEL55E]
 gi|52307464|gb|AAU37964.1| Rnd protein [Mannheimia succiniciproducens MBEL55E]
          Length = 380

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 65/200 (32%), Gaps = 27/200 (13%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           N   +  I + + +     +  T  + +       + +++ K   I +   +Q      +
Sbjct: 10  NPPHFMLITDDEALADVCARASTKSAIALDTEFVRIRSYYPKLGLIQLYDGEQVSLIDPQ 69

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               F                         K+   +   LK+ H    D  V   Y   +
Sbjct: 70  EIQDFSP----------------------FKQLLADPKILKVLHACHEDLEVFQHYYQQL 107

Query: 484 -RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D  +M+  L   ++S  +AS+ + + +    EI K    +  + +   ++   +A
Sbjct: 108 PAPMLDTQIMANFL-GFQNSMGLASLIKHYFNL---EIDKGASRTDWLARPLSNRQLAYA 163

Query: 543 IENSNVILQLWLLLRPKLIV 562
             +   +L L+  ++  L  
Sbjct: 164 AADVWYLLPLYCKMQNALEQ 183


>gi|145638698|ref|ZP_01794307.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
 gi|145272293|gb|EDK12201.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
 gi|309750190|gb|ADO80174.1| Ribonuclease D [Haemophilus influenzae R2866]
          Length = 380

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N   +  I +   + +     +   + +       +  +  K   I +   +      
Sbjct: 5   CQNPPHFRVIADNAALLEICNLAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLID 64

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYG 480
               T F                              N   LK+ H+   D LV L  + 
Sbjct: 65  PLAITDFSPFIA----------------------LLANPKVLKVLHSCSEDLLVFLQEFD 102

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              R   D  +M+  L  G S+  +A +AQ++L+    EI K    +  I +   +   +
Sbjct: 103 QLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNV---EIDKGATRTNWIKRPLSNIQLQ 158

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L L+ +L  +L  
Sbjct: 159 YAAGDVWYLLPLYHILEKELAK 180


>gi|328872117|gb|EGG20484.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 347

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 19/129 (14%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR------SSHDI 505
           LK   E++  LKI H+ + D  +L HRY +++    DI +   +L   +          +
Sbjct: 190 LKDLLESKIILKIVHDCRRDSEILYHRYQVTLDHVYDIQIAHALLQKKKEGNVPIRRFGL 249

Query: 506 ASIAQKW-----------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           A +   +           + +  +++ K+    I   +     + ++   +  V+L ++ 
Sbjct: 250 AELTDLYAPKPYAQQAINVKHKGRDLFKNN-LDIWRQRPLPPTIIDYCALDVIVLLPIYN 308

Query: 555 LLRPKLIVE 563
           +L P+L   
Sbjct: 309 ILTPQLHSP 317


>gi|289628944|ref|ZP_06461898.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651074|ref|ZP_06482417.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486131|ref|ZP_07004194.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159138|gb|EFI00196.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330868058|gb|EGH02767.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 377

 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 5/176 (2%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D++    ++   +    LD +         I   L +   Q +   + L       L   
Sbjct: 12  DSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLINDWRPLSAL 71

Query: 457 FENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
            EN   +K+ H    D  VL R  G       D  L +  L+ G S    + + Q+ L+ 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSM-GYSRLVQEVLNI 130

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
              ++ K    S  + +        +A E++  + +L+ +LRP+L  +K   + + 
Sbjct: 131 ---DLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRLSDDKYAWLLDD 183


>gi|198433586|ref|XP_002125927.1| PREDICTED: similar to GK24652 [Ciona intestinalis]
          Length = 1122

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 93/305 (30%), Gaps = 76/305 (24%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +     +   ++ R         + P    +G +++    +PP    + AD    EL I 
Sbjct: 723  IVPQAIVCGAVSRRAVERVWLTASNPQLDRIGSELKAMVQAPPGFCFVGADVDSQELWIA 782

Query: 759  AHI-----AKITPLYQVFE--------NSLDIHRMVAA---------EIFG--------- 787
            + +     AK      +             D+H   AA         ++F          
Sbjct: 783  SLLGDASSAKEHGCTALSWMTLRGNKKEGTDLHSTTAASIGISRDQAKVFNYGRMYGAGK 842

Query: 788  ----VNIEKVSPQMRR---HAKT-INFSIIYGISPFRLATQL-----RIPRSEAADYIKR 834
                 ++ + +  + R    AK    + I  G   ++L+        +      ++ +  
Sbjct: 843  KSSLRSLMQFNKDLSREECIAKVNKLYGITKGEVQYKLSRDALWIIQKTGIELNSEAMTS 902

Query: 835  YFHRFPGIHEYIEKTKNFVRQ----------------NGYVETIFGRRIH---------- 868
             +  F  +   I+   N                    +G +E+    ++           
Sbjct: 903  GYASFDDV-TLIQNVANEASNYTARINRNDLVCGRRWHGGIESHMFNKVEEISNSKTPKT 961

Query: 869  --YDEINSPK---SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923
               D   S       +        +N  +Q SA D     ++S+   +E +KL  + +L 
Sbjct: 962  PALDCKISRALEPGKVNGNFVTTRMNWVVQSSAVDYLHLLLVSMRWLIEKYKLDCRFVLS 1021

Query: 924  IHDEL 928
            IHDE+
Sbjct: 1022 IHDEV 1026


>gi|294084811|ref|YP_003551571.1| 3'- 5' exonuclease family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664386|gb|ADE39487.1| 3'- 5' exonuclease family protein, putative [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 203

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 57/192 (29%), Gaps = 24/192 (12%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
                 ++     +    T  +     +   + +S+ D  +    ++        V    
Sbjct: 8   DDLPADIDLGSIVAIDTETMGLKTQRDRLCLVQLSSGDG-NAHLVQIAQPAKPSPV---- 62

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVL 496
                          L     +    K+ H  ++D   L  Y  ++ G      + S + 
Sbjct: 63  ---------------LAALLADPAVTKLFHFARFDLAALIHYIGAVEGDIYCTKIASKLA 107

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            +    H +  + ++ L     +I K ++SS    +      Q +A  +   +  +   L
Sbjct: 108 RTYTDRHGLKELCRELLQI---DISKQQQSSDWGAETLTIDQQNYAAGDVLYLHAIREKL 164

Query: 557 RPKLIVEKLLHV 568
              L  E  + +
Sbjct: 165 SYMLERENRMAL 176


>gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera]
          Length = 935

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 64/200 (32%), Gaps = 27/200 (13%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           DSY  +     +++    L      +      ++ +F      I IST            
Sbjct: 111 DSYVWVETELQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQIST------------ 158

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                     ++D         + L  L+  F N    K+ H    D L L R + I + 
Sbjct: 159 ---------QNEDYLVDTIALHDTLDVLQPVFANPSICKVFHGADNDVLWLQRDFHIYVV 209

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D      VL   +    +A + + +      ++L   +      +    ++ E+A  
Sbjct: 210 NLFDTAKACEVL--SKPQKSLAYLLETYCGVATNKLL---QREDWRQRPLSVEMLEYAQT 264

Query: 545 NSNVILQLWLLLRPKLIVEK 564
           +++ +L +   L  +L    
Sbjct: 265 DAHYLLYIANCLIAELRQHD 284


>gi|221055149|ref|XP_002258713.1| endonuclease [Plasmodium knowlesi strain H]
 gi|193808783|emb|CAQ39485.1| endonuclease, putative [Plasmodium knowlesi strain H]
          Length = 415

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            ++S D D +   +P    +   K+++  I+ + ++ +  I  E+ +    L+G   D  
Sbjct: 287 IVVSDDTDALAFGAPNLIRFIMNKKKRHIINKDELLNELNISYEQFIDFCILSG--CDYS 344

Query: 194 PGIPGIGYKTAALLLQEYGNLENILIN 220
             IPGIG   A  ++++Y  +E  L +
Sbjct: 345 AKIPGIGPVKAHNIIKKYKTIETFLES 371


>gi|115749082|ref|XP_001197560.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115959781|ref|XP_001192991.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 277

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
           ++ + + V++  G+  ++ + L  L G   D    I GIG K A  L++ +G++E IL  
Sbjct: 98  QEFNYQRVLEGLGLNRQQFIDLCILMG--CDYCGTIKGIGMKRAFELMKTHGSIETILEK 155

Query: 221 ASRIKQKKRRENILEYAETARLSRKLV 247
             + K     + + + A    LS  + 
Sbjct: 156 IDQNKYPPPEDWLYKEARELFLSPDVT 182


>gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca]
          Length = 834

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 53/410 (12%), Positives = 127/410 (30%), Gaps = 57/410 (13%)

Query: 268 NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIK 327
           N P L          K + R  +    +     P  LD+            +       +
Sbjct: 195 NTPFLPKIFIKPNAQKPLPRALSKERRERPQDRPEDLDV-------PPALADFIHQQRTQ 247

Query: 328 TSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387
             +    +          TP    L++ Q     P+       + +  ++ +  +KL T 
Sbjct: 248 QVEQDMFAHPYQYELDHFTPPDPVLQKPQPQLYRPVGETPCHFVSSLDELVELNEKLLTC 307

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +  +                          SF   T  + +S  T         L  
Sbjct: 308 QEFAVDLE--------------------HHSYRSFLGLTCLMQISTRTEDFIIDTLELRS 347

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
           E+   L +   +   +K+ H    D   L + +G+ +    D    + +L+     H + 
Sbjct: 348 EMY-ILNESLTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN--LGRHSLD 404

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            + + +       +  +++  +   +I     ++  +A ++++ +L ++  +R +L    
Sbjct: 405 HLLKLYCG-----VESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERG 459

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
                   ++P+   V+      I      LK+ +  I  +   LE  +Y       N  
Sbjct: 460 -------NEQPVQLQVAWQRSRDI-----CLKKFAKPIFTDESYLE--LYRKQKRHLN-- 503

Query: 625 SPKQLG--DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672
             +QL    +LF      +  + ++  +      + +I        + I+
Sbjct: 504 -TQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGII 552


>gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 1436

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           +      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 415 KDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSIT 474

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +  G       ++   + F+ +      GHN+++D       L R G+    +   D +
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTL 532

Query: 491 LMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +S +L   +S H + S+A+K+   L +  +    +  +   + K+ D+  +++
Sbjct: 533 EVSRLLHPEQSRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMFKLLDAFNKKY 586


>gi|296412156|ref|XP_002835792.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629585|emb|CAZ79949.1| unnamed protein product [Tuber melanosporum]
          Length = 914

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 67/218 (30%), Gaps = 32/218 (14%)

Query: 82  ANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTD 141
            +R    E+    +   +     FGIP I     EA+   A    +   +G    I++ D
Sbjct: 543 KDRRDADEVTQAMVQECQQLLTLFGIPYITAP-MEAEAQCAELVRLGLVDG----IVTDD 597

Query: 142 KDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
            D    +   T +Y  +       E      + K++ +    ++ +  L G   D   G+
Sbjct: 598 SDTF--LFGGTRVYKNMFNQAKFVECYLAGDLEKEYALDRTGLIRIAHLLG--SDYTEGV 653

Query: 197 PGIGYKTAALLLQEYGNLENI-------------LINASRIKQKKRRENILEYAETARL- 242
           P +G  TA  LL E+ +   +             L   +       R+   + A    L 
Sbjct: 654 PTVGPVTAMELLAEFASDNGLTEFKEWWTAVQTGLRKPADDDDNPFRKKFRKNATKVFLP 713

Query: 243 ----SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                 ++        +            +   L  FL
Sbjct: 714 TNFPDPRVDEAYMHPEVDHDPSQFEWGMPDLDGLRRFL 751


>gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 386

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 57/339 (16%), Positives = 123/339 (36%), Gaps = 57/339 (16%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LS L++ F++E   K+ H+ + D   L  R+    R   D    S + +   +S   + +
Sbjct: 68  LSPLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKL 127

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLH 567
            +++L     ++L  R        +S+ +V  +A+++   + +L+ +L   L   E+L  
Sbjct: 128 VEQFLGVKLNKLLFKRV-DWSHRPLSEGKV-RYALDDVTYLHELYEVLLGILTAKERLTW 185

Query: 568 VYERLDKPMIDVV--SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL-- 623
             E ++      V      + G+    + L +  A I+++++   E +  L     N+  
Sbjct: 186 FLEEMENIAEAFVDNYDSLLEGMDFFPE-LGESEAIIARSIIEWREKVARLFNVNRNIVM 244

Query: 624 ------------------------SSPKQLGDILFTKLK-FPSGAKTKTGQWKTTAQDLE 658
                                    S   LG++ F+      S A  K G +K   +D  
Sbjct: 245 HSKSVLLATKDFLRSRDEEVLYRYVSGSYLGNLPFSLCDILESSAGRKLGVYKLVDRDKP 304

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            ++     +     E     K+ ++  + L   INK    +   +               
Sbjct: 305 MLSALLILLNSMCREHGISQKLVASKVE-LVKLINKIHSNIMHGW--------------- 348

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                  + +   +    FI+  T+ + S D S  ++R+
Sbjct: 349 -------RYEFFGRKVEKFIAGETRLIFSVDNSGGQMRL 380


>gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 422

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 85/317 (26%), Gaps = 124/317 (39%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF--------------------- 771
           +R   I+P  KKL+ AD S IE R+LA +A  TP    F                     
Sbjct: 71  LRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITH 130

Query: 772 -------------------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI---- 808
                                  DI++   A  FG+  + V+ + R+  K    ++    
Sbjct: 131 GALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGG 190

Query: 809 ----------IYGISPFRLATQLRIPRSEAAD---------------------------- 830
                     +Y I    +A Q  +P     +                            
Sbjct: 191 GVGAFAAFAAMYHIDLEAMAEQAALPPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDV 250

Query: 831 YIKRYFHRFPGIHEYIEKTK----------NFVRQNGYVETIFGR---RIHYDEIN---- 873
           + + + +  P I  + +  +                  +   + R   R+          
Sbjct: 251 FKRAWRNAHPAIAAFWQALQFAATDAIGHPETAHTCCGITVQYSRAWLRLRLPSGRVLYY 310

Query: 874 -------------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
                              + K +         +    Q  + D+    M ++  +    
Sbjct: 311 AAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAA---- 366

Query: 915 KLATKMLLQIHDELVFE 931
                ++L +HDE++ E
Sbjct: 367 --GYAIVLTVHDEMITE 381


>gi|82617225|emb|CAI64131.1| DNA repair protein [uncultured archaeon]
 gi|268322957|emb|CBH36545.1| flap structure-specific endonuclease [uncultured archaeon]
          Length = 330

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 24/190 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----- 153
           +      GIP ++       +  A   Y+  + G A  + S D D +   +P T      
Sbjct: 135 KTLLTLMGIPYVQAP----SEGEAQAAYMV-QNGDAELVSSQDYDSLLFGAPITIRNLSA 189

Query: 154 LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
                K E ++++ +    GI  E+++ +  L G   D   GI G+G K A  L++++ +
Sbjct: 190 PRKKAKLELVELKALEDTQGIIREELIDIAILVG--TDFNEGIKGVGVKRALKLIKKHHS 247

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
           +E I+  A+ I      EN            +LV      P       L     +  ++ 
Sbjct: 248 IEKIISQAA-IDTSAGIEN-----------YELVRELFLHPDVTDSYELKWGTLDAGKIK 295

Query: 274 SFLKALEFTK 283
             L  +    
Sbjct: 296 ELLCEVHDFS 305


>gi|225429426|ref|XP_002276186.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147856945|emb|CAN82846.1| hypothetical protein VITISV_007988 [Vitis vinifera]
 gi|296081603|emb|CBI20608.3| unnamed protein product [Vitis vinifera]
          Length = 341

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 63/179 (35%), Gaps = 17/179 (9%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + I    +  D         + ++   +          + ++   K   E+ +  K+ H+
Sbjct: 56  LVIGFDCEGVDLCRHGTLCIMQIAFPDAIYLVDAIQGGEMLMKACKPALESSYITKVIHD 115

Query: 469 IKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIAS--------IAQ-KWLSYTR- 517
            K D   L+ ++GI +    D  +   +++       +          +A  ++   +  
Sbjct: 116 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRLVDDYISFVGLLADPRYCGVSYL 175

Query: 518 -----KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
                +++L+          +SD  V+  A ++   +L ++  +  KL    L ++  R
Sbjct: 176 EKQEVRDLLRQNPDFWTHRPLSDLMVRA-AADDVRFLLYIYHKMMEKLNERSLWYLAVR 233


>gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus]
          Length = 885

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 116/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     P+       I 
Sbjct: 233 VPPALADFIYQQRTQQVEQDMFAHPYQYELNHFTPPDSVLQKPQPQLYRPVEETPCHFIS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
               +D        +  +  L +   N   +K+ H    D   L + +G+ +    D   
Sbjct: 333 T-RMEDFIIDTLELRSDMYILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCN-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIVEKLLHV--YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDKMRLELWDRGNSQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 504 TQQLAAFQL 512


>gi|67537662|ref|XP_662605.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
 gi|40741889|gb|EAA61079.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
 gi|259482125|tpe|CBF76306.1| TPA: exosome complex exonuclease Rrp6, putative (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 1297

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 129/377 (34%), Gaps = 53/377 (14%)

Query: 247 VMLRTDVPITI-----PLEHLILEDCNG-----PRLISFLKALEFTKLINRVATTYDCDA 296
               TD+   +      +E       +       +  + L    FT +I +++ + D DA
Sbjct: 65  ATAGTDISAPVLSDEDSIEDNWRGIVDVIDALLEKADACLDE--FTGVIKKLSPSQDKDA 122

Query: 297 ------------ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
                       A   P + D   ++     ++ E   D T  +     L  +   I   
Sbjct: 123 EARGAAASNMRRAQNFPTIYDYGPSKIPKPQLQFEHQVDPTDTSPFRPLLKTKPHAIEPL 182

Query: 345 Q---TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT-DTMD 400
           +   TP        +   +  I    Y   V T      +  L    +A+  + T D + 
Sbjct: 183 EQSLTPSIDAPHGSRNPYETEIRAAKYPSSVYTVSPP--IDYLPFETTAATFVDTLDGVK 240

Query: 401 AFHSKPIA---IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
              ++  +   IAI  L+  D  S+      + +S              +E L  L + F
Sbjct: 241 EMLAELKSAREIAI-DLEHHDVHSYHGLVSLMQISTREKDWVVDTLKPWREELQMLNEVF 299

Query: 458 ENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSY 515
            + + LK+ H    D + L R  G+ + G  D    +  L+   +S         K+L +
Sbjct: 300 ADPNILKLFHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKKS--------LKYLLH 351

Query: 516 TRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLI-----VEKLLHV 568
                   ++  +   +I    S +  +A  +++ +L ++  LR +L+      + L+  
Sbjct: 352 KFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYIYDNLRNELLTNSTPEDNLVD- 410

Query: 569 YERLDKPMIDVVSQMEI 585
              L+K   + + + E 
Sbjct: 411 -YVLEKSKTEALQRYER 426


>gi|327308500|ref|XP_003238941.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
 gi|326459197|gb|EGD84650.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
          Length = 867

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 84/255 (32%), Gaps = 33/255 (12%)

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKIN-------SEQTPQKLFLERLQKLSQYPINNDSY 368
           ++++      ++ S   S  D T   N          T      E+ +     P+ +   
Sbjct: 184 LKSKPHALVGLEESLGGSFQDPTKPYNHPYEKEIEASTYPARVYEKAEPTMYTPVADSKA 243

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +   +D+   + +L+     +  +                       D   +      
Sbjct: 244 IFVETLEDVHAMLSQLKQAKEIAVDLE--------------------HHDSHVYHGLVCL 283

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
           + +S              ++ L  L + F +   +K+ H    D + L R  G+ + G  
Sbjct: 284 MQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLF 343

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D    +  L        +  +  +++ +   +  K  +++    +   + + ++A  +++
Sbjct: 344 DTFHAASALQ--LPKKSLKFLLHEYVGF---DADKQYQTADWRIRPLLAGMLDYARSDTH 398

Query: 548 VILQLWLLLRPKLIV 562
            +L ++  LR +L+ 
Sbjct: 399 FLLYIFDRLRNQLLE 413


>gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus]
          Length = 860

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 116/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     P+       I 
Sbjct: 233 VPPALADFIYQQRTQQVEQDMFAHPYQYELNHFTPPDSVLQKPQPQLYRPVEETPCHFIS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
               +D        +  +  L +   N   +K+ H    D   L + +G+ +    D   
Sbjct: 333 T-RMEDFIIDTLELRSDMYILNESLTNPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + +     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCN-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIVEKLLHV--YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  I  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDKMRLELWDRGNSQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           + +   + L
Sbjct: 504 TQQLAAFQL 512


>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
 gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
          Length = 1438

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 98/276 (35%), Gaps = 47/276 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L+      F   T  + A + +   I +S +  K+         FID   H S+ +T   
Sbjct: 414 LKDATYVVFDTETTGLSAIYDRV--IELSAVKMKNSNVIDQFEEFIDPGFHLSEQTTNLT 471

Query: 444 TLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGI-SMRG-FE 487
           ++T          +E+    + F E+   + +GHN+ +D   ++    R+G+  ++    
Sbjct: 472 SITDEMVHGSKSEEEVFKLFRDFCEDA--IVVGHNVTFDIGFMNTGYVRHGMPEIKNPII 529

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK-------------------WLSYTRKEILKSRKSSI 528
           D + ++  L      + + ++A+K                    L+Y   +  + R   +
Sbjct: 530 DTLTLARFLYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIV 589

Query: 529 PIDKISDSQVQEHAIENSN-----VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS-Q 582
             D+++D   +  A +++      +I +  + L+    +  L +V      P +     +
Sbjct: 590 YHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVSLSNVDYFFRVPRVPRTQLE 649

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
               GI +            +  +    +     +G
Sbjct: 650 KFREGIIVGSAC--SSGEVFTAMMQKGMDEARKKAG 683


>gi|260428903|ref|ZP_05782880.1| 3'-5' exonuclease [Citreicella sp. SE45]
 gi|260419526|gb|EEX12779.1| 3'-5' exonuclease [Citreicella sp. SE45]
          Length = 204

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 24/193 (12%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
                L+     +    T  +D    +   + +S  D                + H  Q 
Sbjct: 9   DLPDGLDLGPVVAIDCETMGLDPHRDRLCVVQLSGGDG---------------NAHLVQV 53

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLD 497
           + G+          L +   +E  LK+ H  ++D   + H +G          + S ++ 
Sbjct: 54  ARGQTEAPN-----LCRLLRDETVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRMVR 108

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           +    H + ++ Q+ LS    +I K ++SS        +   ++A  +   + QL   L 
Sbjct: 109 TYTDRHGLKALTQELLSV---DISKQQQSSDWGAADLTAAQLDYAASDVLYLHQLRDRLN 165

Query: 558 PKLIVEKLLHVYE 570
             L  E    + +
Sbjct: 166 GMLEREGRTALAQ 178


>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 1438

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 98/276 (35%), Gaps = 47/276 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L+      F   T  + A + +   I +S +  K+         FID   H S+ +T   
Sbjct: 414 LKDATYVVFDTETTGLSAIYDRV--IELSAVKMKNSNVIDQFEEFIDPGFHLSEQTTNLT 471

Query: 444 TLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGI-SMRG-FE 487
           ++T          +E+    + F E+   + +GHN+ +D   ++    R+G+  ++    
Sbjct: 472 SITDEMVHGSKSEEEVFKLFRDFCEDA--IVVGHNVTFDIGFMNTGYVRHGMPEIKNPII 529

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK-------------------WLSYTRKEILKSRKSSI 528
           D + ++  L      + + ++A+K                    L+Y   +  + R   +
Sbjct: 530 DTLTLARFLYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIV 589

Query: 529 PIDKISDSQVQEHAIENSN-----VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS-Q 582
             D+++D   +  A +++      +I +  + L+    +  L +V      P +     +
Sbjct: 590 YHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVSLSNVDYFFRVPRVPRTQLE 649

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
               GI +            +  +    +     +G
Sbjct: 650 KFREGIIVGSAC--SSGEVFTAMMQKGMDEARKKAG 683


>gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis]
          Length = 669

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 82/219 (37%), Gaps = 32/219 (14%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P    LE+   +   P++ DS   +     +   +++L+     +  +   +  ++    
Sbjct: 96  PLSSQLEKPTPIKSGPVDTDSCIFVDGVNGLNMLIRELKQESEIAVDLEAHSFRSYQGIT 155

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             + +ST                        D        +  L+ L + F N   +K+ 
Sbjct: 156 CLMQLST---------------------RKTDYIVDTLALRANLNILNQVFTNPKIVKVF 194

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKS 523
           H    D   L R +G+ +    D    + VL+ G        +++++L   Y + E  K 
Sbjct: 195 HGADQDIKWLQRDFGVYVVNLFDTGQAARVLELG--------LSREYLLKHYCKVESDKK 246

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            + +   ++     + ++A E+++ +L ++ +++  L+ 
Sbjct: 247 YQKADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLLE 285


>gi|148807530|gb|ABR13568.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 160

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 16/158 (10%)

Query: 592 QDLLKQVSAEISKNLLSLEENIY-DLSGE-------KFNLSSPKQLGDILFTKLKFPSGA 643
              ++Q++ ++ K    + E  + + +G+       +FN+ S KQ+ + L   +      
Sbjct: 10  THKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKL 68

Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703
           +T+ G      +    +   D P  K I E+  L K ++   DS   H  ++  RVH   
Sbjct: 69  QTEKGAIIANEKV---LEGIDIPEAKMIYEYLMLQK-RAAQIDSWLTH--EKDGRVHGRV 122

Query: 704 SLASTMTGRLASLEPNLQNIP-IKTDLGQKIRRAFISP 740
                +TGR+    PNL  +P +    G + R  +  P
Sbjct: 123 ITNGAVTGRMTHHSPNLAQVPSVSAPYGXECRSFWCVP 160


>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
 gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
          Length = 1438

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 98/276 (35%), Gaps = 47/276 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L+      F   T  + A + +   I +S +  K+         FID   H S+ +T   
Sbjct: 414 LKDATYVVFDTETTGLSAIYDRV--IELSAVKMKNSNVIDQFEEFIDPGFHLSEQTTNLT 471

Query: 444 TLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGI-SMRG-FE 487
           ++T          +E+    + F E+   + +GHN+ +D   ++    R+G+  ++    
Sbjct: 472 SITDEMVHGSKSEEEVFKLFRDFCEDA--IVVGHNVTFDIGFMNTGYVRHGMPEIKNPII 529

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK-------------------WLSYTRKEILKSRKSSI 528
           D + ++  L      + + ++A+K                    L+Y   +  + R   +
Sbjct: 530 DTLTLARFLYPNMRGYRLNTLAKKFDVNLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIV 589

Query: 529 PIDKISDSQVQEHAIENSN-----VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS-Q 582
             D+++D   +  A +++      +I +  + L+    +  L +V      P +     +
Sbjct: 590 YHDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVSLSNVDYFFRVPRVPRTQLE 649

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
               GI +            +  +    +     +G
Sbjct: 650 KFREGIIVGSAC--SSGEVFTAMMQKGMDEARKKAG 683


>gi|195025439|ref|XP_001986060.1| GH21157 [Drosophila grimshawi]
 gi|317374890|sp|B4J6M4|FEN1_DROGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|193902060|gb|EDW00927.1| GH21157 [Drosophila grimshawi]
          Length = 388

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIA---EKEGFAVTIIS-TDKDLMQLVSPTTCL 154
           +   +  G+P ++    EA+   A               +  ++     L++ ++ +   
Sbjct: 142 KELLKLMGVPYVDAPC-EAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEAR 200

Query: 155 YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
              VKE   D   V++   +  ++ + L  L G   D    I G+G K A  L++ Y ++
Sbjct: 201 KMPVKEFSYD--KVLQGLELTSKEFIDLCILMG--CDYCESIRGVGPKRAIELIKSYRDI 256

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274
           E IL N         +  + E     + +R+L  +  DV     +  L   D +   L+ 
Sbjct: 257 ETILENID-----TNKYAVPENWNY-KRAREL-FIEPDVTDASTI-DLKWTDPDEDGLVQ 308

Query: 275 FL 276
           FL
Sbjct: 309 FL 310


>gi|66811680|ref|XP_640019.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|60468043|gb|EAL66053.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 390

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 34/223 (15%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHS-----------------KPIAIAISTLDQK 417
           K  ++ ++K++            + D  +                  K I + I  ++  
Sbjct: 138 KQKEREIKKIKNQIVFEMSREETSFDNIYMVDCLSKMNYAIHEIKKEKLIGLDIEAIEMG 197

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL- 476
                 +  I          D              LK+  E+   LK+ H+ + D  +L 
Sbjct: 198 KKGDISLVQISTPNGRIYLFDIIKMGANVTPFKYGLKEVLESVKILKVVHDCRRDSEILF 257

Query: 477 HRYGISMRGFEDIMLMSYVLDSG------RSSHDIASIAQKWLSYTRKEILKSRKSS--- 527
           HRY +++    D+ +   ++            +    +   + S    EI    K     
Sbjct: 258 HRYQVALAHVYDVQIAHALVQKKIQGNIPIRRYGFNELIDLYTSRKYSEICIDIKFKVKQ 317

Query: 528 -------IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
                  +   +       ++A  ++  +L ++  ++PKL   
Sbjct: 318 QFENQPEVWAKRPLPKDFIDYASLDAACLLPIYYHIKPKLQSN 360


>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 524

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 73/171 (42%), Gaps = 11/171 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           SYLK+ F++    K+ H    D + L R + + +    D    S VL   R+S  +  + 
Sbjct: 28  SYLKEIFKDPTKRKVMHGADRDIMWLQRDFRVYVCNLFDTGQASRVLQMERNS--LEHLL 85

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-- 567
             +   T  +I    +++    +    ++ ++A E+++ +L ++ L+R +L  E      
Sbjct: 86  HHFCGVTANKIY---QNADWRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRESTSEND 142

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQ---VSAEISKNLLSLEENIYD 615
           +   + K   D+  Q+    +  D+  L        E++   L++   ++ 
Sbjct: 143 LLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELTAAQLAVVSALHQ 193


>gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1436

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           E      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 415 EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSIT 474

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +  G       ++   + F+ +      GHN+++D       L R G+    +   D +
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTL 532

Query: 491 LMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +S +L   +S H + S+A+K+   L +  +    +  +   + K+ D+  +++
Sbjct: 533 EVSRLLHPEQSRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMFKLLDAFNKKY 586


>gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus crispatus 214-1]
 gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus crispatus 214-1]
          Length = 1436

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           E      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 415 EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSIT 474

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +  G       ++   + F+ +      GHN+++D       L R G+    +   D +
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTL 532

Query: 491 LMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +S +L   +S H + S+A+K+   L +  +    +  +   + K+ D+  +++
Sbjct: 533 EVSRLLHPEQSRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMFKLLDAFNKKY 586


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 23/267 (8%)

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           D +      + L  N ++       T+          +  +++D        +       
Sbjct: 320 DVEGEKRVELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAADK 379

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA-- 410
             L+ L    IN       V  +  +  V  L       F + T  + A + K I +A  
Sbjct: 380 AGLKMLYGVEINLVDDGTPVAYRAEEPRV--LADAEYVVFDVETTGLSAVYDKVIELAAV 437

Query: 411 -------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                  I   ++  D  F +  + I+L+ H + D    +   +E+    ++F   +  +
Sbjct: 438 KMKDGQVIDQFEEMIDPGFPLSELTINLT-HITDDMVHGSKSEEEVFRLFQQFC--DGAI 494

Query: 464 KIGHNIKYDKLVL----HRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQKW---LS 514
            +GHN+ +D   L     R+G++       D + +S +L   R +H + ++A+++   L 
Sbjct: 495 MVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQYKVSLE 554

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEH 541
           +  +    +  +   +  +     + +
Sbjct: 555 HHHRANADAEATGYLLYALEKEAAKMY 581


>gi|325116391|emb|CBZ51944.1| hypothetical protein NCLIV_017360 [Neospora caninum Liverpool]
          Length = 3989

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 42/99 (42%)

Query: 537  QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            +    A+E +   +    +L  +L    LL VY  L+ P+  VV+ M   G+ +D   L 
Sbjct: 2730 KAIALAVEANWRRICASAVLAEELRQHGLLEVYLHLEAPLARVVNAMARRGLPVDSAFLT 2789

Query: 597  QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635
              +    + L +L+ +   L+G   +  S   L  +L  
Sbjct: 2790 SQADRFRRLLHALQLHFCRLAGSSVDPLSEASLAAVLLH 2828


>gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
 gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
          Length = 882

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
            YL++FF +    K+ H    D + L R + I +    D    S VL   R+S       
Sbjct: 307 DYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVCNLFDTGQASKVLQMDRNS------- 359

Query: 510 QKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            + L +    +  +++      ++     ++ ++A E+++ +L ++ L+R +L+ E
Sbjct: 360 LEHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVNE 415


>gi|319898371|ref|YP_004158464.1| Ribonuclease D [Bartonella clarridgeiae 73]
 gi|319402335|emb|CBI75874.1| Ribonuclease D [Bartonella clarridgeiae 73]
          Length = 193

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 24/169 (14%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           S +    T  +     +   + +S+ D   D                 Q + G+N     
Sbjct: 8   SIAIDTETLGLKPHRDRLCVVQLSSGDGTAD---------------IIQVAKGQNRAPN- 51

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
               L    E++   KI H  ++D  +L   +G+         + S +  +    H +  
Sbjct: 52  ----LVALLEDKAITKIFHFGRFDLAILAHTFGVIPDVVFCTKIASKLTRTYTDRHGLKE 107

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           I  + L+     I K ++SS            E+A  +   + +L  + 
Sbjct: 108 ICSELLNIN---ISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKNIF 153


>gi|225447009|ref|XP_002268685.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 936

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 64/200 (32%), Gaps = 27/200 (13%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           DSY  +     +++    L      +      ++ +F      I IST            
Sbjct: 111 DSYVWVETELQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQIST------------ 158

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                     ++D         + L  L+  F N    K+ H    D L L R + I + 
Sbjct: 159 ---------QNEDYLVDTIALHDTLDVLQPVFANPSICKVFHGADNDVLWLQRDFHIYVV 209

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D      VL   +    +A + + +      ++L   +      +    ++ E+A  
Sbjct: 210 NLFDTAKACEVL--SKPQKSLAYLLETYCGVATNKLL---QREDWRQRPLSVEMLEYAQT 264

Query: 545 NSNVILQLWLLLRPKLIVEK 564
           +++ +L +   L  +L    
Sbjct: 265 DAHYLLYIANCLIAELRQHD 284


>gi|29366722|ref|NP_813767.1| exonuclease [Pseudomonas phage gh-1]
 gi|29243581|gb|AAO73160.1|AF493143_21 putative exonuclease [Pseudomonas phage gh-1]
          Length = 314

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 12/145 (8%)

Query: 67  YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAF-GIPAIEIQGFEADDIIATYT 125
                +R E+   YKANR    + +       +     F    + +  G E DD+     
Sbjct: 82  SGDDNWRKEVLETYKANRKGKRKPVGY-PHFCQGIMDHFGPERSFKWHGVEGDDVCGILM 140

Query: 126 YIAEKEGFAVTI-ISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184
                 G    I +S DKD   +  P    + T  E   + E    K+ +       +Q 
Sbjct: 141 TNPGLAGCDRVISVSCDKDFNTV--PGYFFWLTQMELVKNDEATADKFHM-------IQT 191

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQ 209
           + GD  D   GIPG+G +TA   ++
Sbjct: 192 MMGDVTDGYGGIPGVGKETAKEFVE 216


>gi|148727214|ref|YP_001285706.1| p37 [Xanthomonas phage Xop411]
 gi|116583514|gb|ABK00184.1| p37 [Xanthomonas phage Xop411]
          Length = 309

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 87/245 (35%), Gaps = 24/245 (9%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA 69
           VDG      A+Y     S   D  P  A     +M+ + +Q +  +    H +       
Sbjct: 35  VDGDYL---AYY----CSGNDDTSPSEAKRASVDMIKRGMQAAGADRAIVHLSASNCTKG 87

Query: 70  VTFR----NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF---EADDIIA 122
             F     ++    Y+  R    +        +R   + +  P  +++ +   EADD IA
Sbjct: 88  HRFVIAACSQTSKPYQGQRKSGQKP--ANWEHLREWLEGYDGPLFKVKIWTDREADDGIA 145

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178
             T  A   G    ++S DKD                  +K    D     K++G    K
Sbjct: 146 YCTEAAYTLGRPGAVMSADKDFRMFAGVHVVWRTLQVVEIKPGTYDQMFAGKQYG---HK 202

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY-A 237
              LQ + GD  DNI G+PG G   A   L      ++ +     + +++ +E    +  
Sbjct: 203 FFWLQMIMGDQADNIVGLPGCGEVAAEKTLHGTSANQDAMAAVVALYKQRMKELWAPHFV 262

Query: 238 ETARL 242
           E A L
Sbjct: 263 EQASL 267


>gi|302501205|ref|XP_003012595.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
           CBS 112371]
 gi|291176154|gb|EFE31955.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
           CBS 112371]
          Length = 1069

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 73/220 (33%), Gaps = 26/220 (11%)

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
             T      E+ +     P+ +     +   +D+   + +L+     +  +         
Sbjct: 406 ASTYPARVYEKAEPTMYTPVADSKAIFVETLEDVHAMLSQLKQAKEIAVDLE-------- 457

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                         D   +      + +S              ++ L  L + F +   +
Sbjct: 458 ------------HHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 505

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H    D + L R  G+ + G  D    +  L        +  +  +++ +   +  K
Sbjct: 506 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASALQ--LPKKSLKFLLHEYVGF---DADK 560

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +++    +   + + ++A  +++ +L ++  LR +L+ 
Sbjct: 561 QYQTADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLE 600


>gi|296004476|ref|XP_001350990.2| DNA binding protein, putative [Plasmodium falciparum 3D7]
 gi|224591370|emb|CAD49018.2| DNA binding protein, putative [Plasmodium falciparum 3D7]
          Length = 448

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           K   ENE  +K+ H+IK +K +     I ++   D  L +Y +D+      + S+ + +L
Sbjct: 168 KNILENEEIIKVAHDIKNEKDMFLSNNIQIKNVFD--LYNYAIDNFIYPPSLQSLVKIYL 225

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
           +     + K  + S  ++     +   +A  ++    Q++  L       +   +   L 
Sbjct: 226 NKF---LDKKFRLSNWLNYSLLQEQILYAAVDAYASRQIYFHLDENKKKSQSYILNYILQ 282

Query: 574 KPMIDVVSQ 582
           +  I    Q
Sbjct: 283 ENQIKSCYQ 291


>gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus]
 gi|123226356|emb|CAM23944.1| exosome component 10 [Mus musculus]
 gi|123248912|emb|CAM21194.1| exosome component 10 [Mus musculus]
          Length = 862

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 175 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIVEKLLHV--YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 504 SQQLTAFQL 512


>gi|197103637|ref|YP_002129014.1| ribonuclease D [Phenylobacterium zucineum HLK1]
 gi|196477057|gb|ACG76585.1| ribonuclease D [Phenylobacterium zucineum HLK1]
          Length = 205

 Score = 54.7 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 6/114 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK+   +    KI H  ++D  +     G+         + S +  +    H +  I+++
Sbjct: 64  LKRLLTDPAVTKIFHFGRFDIAMFWLHLGVLTAPVYCTKIASKIARTYTDRHGLKDISKE 123

Query: 512 WLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            L     ++ K+++SS     K+SD QV  +A  +   +  L   L+  L+ E 
Sbjct: 124 LLGV---DMSKAQQSSDWGAGKLSDEQVA-YAASDVLHLHALKDRLQQMLVREG 173


>gi|68074223|ref|XP_679026.1| flap exonuclease [Plasmodium berghei strain ANKA]
 gi|74991237|sp|Q4Z015|FEN1_PLABE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|56499663|emb|CAH96377.1| flap exonuclease, putative [Plasmodium berghei]
          Length = 478

 Score = 54.7 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 75/222 (33%), Gaps = 23/222 (10%)

Query: 75  EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII---------ATYT 125
           E   + K    +   +   Q    +      GIP IE                   AT T
Sbjct: 119 ENLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATAT 178

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCL 182
             A+   F   I+  + +     +       + +     +I++E V+K   +  ++ +  
Sbjct: 179 EDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDF 238

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L G   D    I GIG KTA  L++EY  +ENI+ N  + K +         A  + +
Sbjct: 239 CILCG--CDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQSFI 296

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL-KALEFTK 283
             K+        +      +   +     L  FL K   F +
Sbjct: 297 KPKV--------LEKSEVKIDWCEPKIEELKKFLIKEHNFNE 330


>gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus]
          Length = 864

 Score = 54.7 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 177 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 234

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 235 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 294

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 295 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 334

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 335 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 393

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 394 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 446

Query: 550 LQLWLLLRPKLIVEKLLHV--YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 447 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 505

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 506 SQQLTAFQL 514


>gi|303245014|ref|ZP_07331336.1| flap structure-specific endonuclease [Methanothermococcus
           okinawensis IH1]
 gi|302484619|gb|EFL47561.1| flap structure-specific endonuclease [Methanothermococcus
           okinawensis IH1]
          Length = 324

 Score = 54.7 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 91/306 (29%), Gaps = 69/306 (22%)

Query: 4   ENHLFLVDGSSFIY------RAFYATPLLSRKHDGLPV-NAIAGFCNMLWKLLQNSRKES 56
           +N    +D  + +Y      R    +PL + K +     N I       +K +     + 
Sbjct: 20  KNKTVAIDSMNILYQFLSSIRLRDGSPLRNSKGEITSTYNGIF------YKNIYMLENDI 73

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-------------------- 96
                  +FD      +++   + K  + K  E  +                        
Sbjct: 74  TP---IWVFDGKPPELKHKTREERKKVKEKAMEEYISAKEEGNLEDMQKYAKRINYLEPK 130

Query: 97  ---LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
                +      GIP I     E +   +         G    ++S D D +   +P T 
Sbjct: 131 VVENSKRLLNLMGIPFINAPS-EGEAQCSYMAKK----GDVYAVVSQDYDALLYGAPRTV 185

Query: 154 LYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
              T      E I+++ V+    I  + ++ +  L G    NI G+ GIG K A      
Sbjct: 186 RNITASNKPLELIELDEVLGALNITLDNLIDMAILIGTDY-NIGGVKGIGPKKA------ 238

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270
                        +K  K  E I    E    + +++      P       L L   N  
Sbjct: 239 ----------LDIVKNNKMGEYIK-NIE----NYEVIKNIFKHPKVTDEYSLKLGAPNIE 283

Query: 271 RLISFL 276
            L  FL
Sbjct: 284 ELRKFL 289


>gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus]
          Length = 887

 Score = 54.7 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 175 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 504 SQQLTAFQL 512


>gi|241600516|ref|XP_002405158.1| exosome component, putative [Ixodes scapularis]
 gi|215502468|gb|EEC11962.1| exosome component, putative [Ixodes scapularis]
          Length = 518

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 76/190 (40%), Gaps = 13/190 (6%)

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S        +F+  T  + +S  +S D        +  L  L + F N   +K+ H    
Sbjct: 36  SKGWHHSYRTFQGFTCLMQISTRSS-DYVVDTLALRHELHLLNEVFANPKIIKVLHGADM 94

Query: 472 DKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
           D L L R +G+ + G  D    + VL        +A ++  +L      +   +K  +  
Sbjct: 95  DVLWLQRDFGLYLVGLFDTGQAARVL-------GMAHLSLAFLLRHYCHLDTDKKFQLAD 147

Query: 531 DKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEIT 586
            +I     ++ ++A E+++ +L ++ L+R  L+    +L ++   + +    V  +    
Sbjct: 148 WRIRPLPLEMIKYAREDTHYLLHVYDLMRRDLLAKGNQLNNLLHSVFQRSKQVCLKRYEK 207

Query: 587 GIQIDQDLLK 596
            +  +   L+
Sbjct: 208 PLYTEDSYLE 217


>gi|254579989|ref|XP_002495980.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
 gi|238938871|emb|CAR27047.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
          Length = 741

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 78/219 (35%), Gaps = 31/219 (14%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           +  L+  + +   P +      + N + +   +Q L+     +  +              
Sbjct: 193 ESILKIAEPIPSKPWDGSEPVWVDNKESLDSMLQDLKKSTEIAVDLE------------- 239

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
                    D  S+      + +S   + D        ++ L  L + F N   +K+ H 
Sbjct: 240 -------HHDYRSYYGIVCLMQVSTRQT-DYLVDTLALRDDLVVLNEVFANPLIVKVFHG 291

Query: 469 IKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
              D + L R  G+ +    D    S  L  G   H +A + + + S+       S+K  
Sbjct: 292 AFMDIIWLQRDLGLYIVSLFDTYHASRAL--GFPRHSLAYLLETFASFKT-----SKKYQ 344

Query: 528 IPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +   ++      +  +A  +++ +L ++  LR KLI+E 
Sbjct: 345 LADWRVRPLSKAMSAYARADTHFLLNIYDQLRNKLIIEN 383


>gi|115658831|ref|XP_001188956.1| PREDICTED: similar to DNA polymerase N, partial [Strongylocentrotus
           purpuratus]
 gi|115686030|ref|XP_797000.2| PREDICTED: similar to DNA polymerase N, partial [Strongylocentrotus
           purpuratus]
          Length = 48

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 895 SAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTAS 941
           SAADI + AMI + K L +   +  ++L+QIHDEL+FEV +E+I    
Sbjct: 1   SAADICKLAMIHIMKVLSEKNTVRARLLVQIHDELLFEVHDEDINEVK 48


>gi|187466046|emb|CAQ52093.1| exosome component 10 [Mus musculus]
 gi|187466070|emb|CAQ51624.1| exosome component 10 [Mus musculus]
          Length = 861

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 174 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 231

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 232 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 291

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 292 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 331

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 332 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 390

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 391 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 443

Query: 550 LQLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 444 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 502

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 503 SQQLTAFQL 511


>gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus]
 gi|123226357|emb|CAM23945.1| exosome component 10 [Mus musculus]
 gi|123248913|emb|CAM21195.1| exosome component 10 [Mus musculus]
          Length = 887

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 175 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 504 SQQLTAFQL 512


>gi|91762366|ref|ZP_01264331.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718168|gb|EAS84818.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002]
          Length = 203

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L K   +E   KI H  + D   + H          D  + S +  S   SH + ++ ++
Sbjct: 65  LNKVLSDESITKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTLIKE 124

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
           +++    ++ K  +SS    ++S +Q+ ++   +   + ++   L   L+ EK + +Y+
Sbjct: 125 FMNV---DVSKQFQSSDFGGELSPAQL-KYCANDVIYLHKIHEELNKILVREKRIDLYK 179


>gi|222084303|ref|YP_002542832.1| RNAse D protein [Agrobacterium radiobacter K84]
 gi|221721751|gb|ACM24907.1| RNAse D protein [Agrobacterium radiobacter K84]
          Length = 208

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 24/190 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G+ +    T  +     +   + +S  D   D                 + ++G
Sbjct: 16  DAARYTGAIAIDTETLGLIPRRDRLCVVQLSPGDGTAD---------------IIRIASG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           ++         L     +    KI H  ++D  VL H +G++        + S +  +  
Sbjct: 61  QSQAPN-----LVAMLADTTRQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     +I K+++SS    +       E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKELLEV---DISKAQQSSDWAAEKLSPAQLEYAASDVLYLHALRDKLTARL 172

Query: 561 IVEKLLHVYE 570
           + +  +   E
Sbjct: 173 VRDGRMEHAE 182


>gi|163757673|ref|ZP_02164762.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
 gi|162285175|gb|EDQ35457.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
          Length = 207

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 24/184 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                 G  +    T  +     +   + +S  D                S    Q + G
Sbjct: 15  AMARYTGDIAVDTETLGLVPRRDRLCVVQLSPGDG---------------SADVIQIAKG 59

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGR 500
           +          L     +    K+ H  ++D  VL+  +G++        + S +  +  
Sbjct: 60  QKRAPN-----LVALLTDRKRRKLFHYGRFDIAVLYNAFGVTTEPVFCTKIASRLTRTYT 114

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +  + ++ L     ++ K ++SS    +       E+A  +   +  L   L  +L
Sbjct: 115 DRHGLKDVTRELLEV---DLSKQQQSSDWAAETLTPAQLEYAASDVLHLHALTAKLTERL 171

Query: 561 IVEK 564
             + 
Sbjct: 172 QRDD 175


>gi|123226358|emb|CAM23946.1| exosome component 10 [Mus musculus]
          Length = 728

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 175 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 504 SQQLTAFQL 512


>gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus]
          Length = 916

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 178 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 235

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 236 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 295

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 296 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 335

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 336 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 394

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 395 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 447

Query: 550 LQLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 448 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 506

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 507 SQQLTAFQL 515


>gi|310817096|ref|YP_003965060.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
 gi|308755831|gb|ADO43760.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 70/212 (33%), Gaps = 25/212 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   + IS  D                + H  
Sbjct: 31  QNDLPDDLDLGPVIAIDCETMGLNPHRDRLCLVQISGGDG---------------NAHMI 75

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYV 495
           Q S G+ +        L +  E+ + LK+ H  ++D   + H +G   +      + S +
Sbjct: 76  QISPGQRSAPN-----LARMLEDANILKLFHYGRFDIAAMYHAFGALAQPVYCTKIASKM 130

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H +  + Q  +     +I K ++ S            ++A  +   + +L   
Sbjct: 131 VRTYTERHGLKFLLQDLIGV---DISKHQQQSDWGAASLTPAQLDYAASDVLYLHRLRAH 187

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           L   L  E    + +      +   +++++ G
Sbjct: 188 LDALLAREGRTGLAQAC-FDFLPTRARLDLEG 218


>gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 1436

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           E      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 415 EGREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSIT 474

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +  G       ++   + F+ +      GHN+++D       L R G+    +   D +
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTL 532

Query: 491 LMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +S +L   +S H + S+A+K+   L +  +    +  +   + K+ D+  +++
Sbjct: 533 EVSRLLHPEQSRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMFKLLDAFNKKY 586


>gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
          Length = 1436

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           E      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 415 EGREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSIT 474

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +  G       ++   + F+ +      GHN+++D       L R G+    +   D +
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTL 532

Query: 491 LMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +S +L   +S H + S+A+K+   L +  +    +  +   + K+ D+  +++
Sbjct: 533 EVSRLLHPEQSRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMFKLLDAFNKKY 586


>gi|8928261|sp|P56960|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen
           PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma
           autoantigen 2 homolog
 gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated
           autoantigen homolog [Mus musculus]
 gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus]
 gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus]
          Length = 887

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 175 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 504 SQQLTAFQL 512


>gi|224088954|ref|XP_002308585.1| predicted protein [Populus trichocarpa]
 gi|222854561|gb|EEE92108.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 63/188 (33%), Gaps = 17/188 (9%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           ++   +K + I      +  +         + L+   +          + ++   K   E
Sbjct: 45  LNPSAAKQLIIGF--DCEGVNLCRHGALCIMQLAFPDAIYLVDAINGGESLIKVCKPALE 102

Query: 459 NEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDI--ASIAQKWL-- 513
           + +  K+ H+ K D   L+ ++GI +    D  +   +++       +    I+   L  
Sbjct: 103 SSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRTRLPGDYISFVGLLA 162

Query: 514 --SYTRKEILKSRKSSIPIDKIS--------DSQVQEHAIENSNVILQLWLLLRPKLIVE 563
              Y     L+  +  + + +             +   A ++   +L ++  +  KL   
Sbjct: 163 DPRYCGVSYLEKEEVRVLLRQDPMFWTYRPLSEMMIRAAADDVRFLLCIYYKMMEKLNER 222

Query: 564 KLLHVYER 571
            L ++  R
Sbjct: 223 SLWYLAVR 230


>gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus]
          Length = 705

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 152 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 209

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 210 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 269

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 270 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 309

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 310 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 368

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 369 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 421

Query: 550 LQLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 422 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 480

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 481 SQQLTAFQL 489


>gi|187466071|emb|CAQ51625.1| exosome component 10 [Mus musculus]
          Length = 727

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 174 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 231

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 232 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 291

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 292 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 331

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 332 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 390

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 391 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 443

Query: 550 LQLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 444 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 502

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 503 SQQLTAFQL 511


>gi|187466045|emb|CAQ52092.1| exosome component 10 [Mus musculus]
 gi|187466069|emb|CAQ51623.1| exosome component 10 [Mus musculus]
          Length = 886

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 174 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 231

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 232 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 291

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 292 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 331

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 332 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 390

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 391 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 443

Query: 550 LQLWLLLRPKLIVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 444 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 502

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 503 SQQLTAFQL 511


>gi|156082429|ref|XP_001608699.1| XPG N-terminal domain and XPG I-region domain containing protein
           [Babesia bovis T2Bo]
 gi|317374876|sp|A7AX58|FEN1_BABBO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|154795948|gb|EDO05131.1| XPG N-terminal domain and XPG I-region domain containing protein
           [Babesia bovis]
          Length = 672

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 86/292 (29%), Gaps = 53/292 (18%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQ-NSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPK 86
               G   + IAG  N   +LL+   R          +FD      +++     K  R +
Sbjct: 56  TNSKGESTSHIAGLLNRCIRLLELGIRP-------VFVFDSTPPEAKSQTLAKRKLLREE 108

Query: 87  IPEML-LPQLPLVRLATQAF-----------------GIPAIEIQGFEADDIIATYTYIA 128
               L        + A + +                  +  + +   EA +         
Sbjct: 109 AESSLEKAIEEDDKEAIRKYVGRTVRITQKENESAKKLLRLVGVPVIEAAEEAEAQCAYL 168

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE---KIDIEHVIKKWGIPPEKMVCLQAL 185
            + GF   + S D D +           T   +   ++D+   ++   +  E+      L
Sbjct: 169 CQRGFVTAVGSEDADALVFRCGVLLKNLTASNKPVVRVDLAKALELLELTHEQFTDFCIL 228

Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245
            G   D    + G+G KTA  L++++G++  IL          R E +  Y         
Sbjct: 229 CG--CDYCGTLKGVGPKTAYNLIKKHGSISRILE--------VRSETLEGYEA------- 271

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
                   P    +  +   + N   L  F             KLI R+   
Sbjct: 272 -AQEYFRDPKVRDITTIDRCEANIDGLREFLISENDFSEERVDKLIERLQKA 322


>gi|193084162|gb|ACF09827.1| XPG I flap structure-specific endonuclease [uncultured marine
           crenarchaeote AD1000-207-H3]
          Length = 341

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 26/156 (16%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVS---- 149
           +     FGIP I+ +     D  AT  ++  K G A  + S D D +     +LV     
Sbjct: 136 KHLLDLFGIPYIQAKA----DGEATAAHM-NKTGKAYAVASQDYDSILFGATKLVRNFTN 190

Query: 150 ------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYK 202
                 P    Y  ++ E I+ +  +   GI  E+++ +  L G   D  P G   IG K
Sbjct: 191 SGRRKLPNRNTYIDIEPEIINYQKSLDALGITGEQIIDIGILVG--TDFNPDGFERIGPK 248

Query: 203 TAALLLQEYGNLENIL---INASRIKQKKRRENILE 235
           TA  +++E+G LE+I        +I  K+ R+  L+
Sbjct: 249 TALKMIKEHGKLEDIPKIQEQLEQIDYKQIRKIFLQ 284


>gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Pichia pastoris
           GS115]
 gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Pichia pastoris
           GS115]
 gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Pichia pastoris CBS 7435]
          Length = 717

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 96/289 (33%), Gaps = 33/289 (11%)

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           ++   Y  D     P    +N   N  +  E           +          +INS++ 
Sbjct: 132 QIEYNYPIDNTESNPFRPLLNQKYNSVVPFEEVHKLVPETDDNPQHHNHPYEFEINSQEY 191

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P+ + LER + +   P  + +   +   + +   +  L      +  +    +  ++   
Sbjct: 192 PKWI-LERREPIVNQPWESTTAIYVETEQQVGDMIDTLSKADVIAVDLEHHDLRTYYGLV 250

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             + IST                      +QD        +  L  L K F +   +K+ 
Sbjct: 251 CLMQIST---------------------RNQDYIVDTLKLRFKLQPLNKVFTDPSIVKVF 289

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D + L R  G+ +    D    S +L  G   H +A + + +  +       S+K
Sbjct: 290 HGAFMDIIWLQRDLGLYVVSLFDTFHASKLL--GFPKHSLAYLLETYAKFKT-----SKK 342

Query: 526 SSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYER 571
             +   ++      +  +A  +++ +L ++  L   LI   KL  V   
Sbjct: 343 YQLADWRVRPLTKPLLAYARSDTHFLLYIFDQLNNMLIESGKLSQVLYD 391


>gi|207344901|gb|EDZ71889.1| YGR258Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1031

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R    E+ +  +  V+     FGIP I     EA+   A    +   +G    II+ 
Sbjct: 759 KDKRDS-DEVTMDMIKEVQELLSRFGIPYITAP-MEAEAQCAELLQLNLVDG----IITD 812

Query: 141 DKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G   D   G
Sbjct: 813 DSDVF--LFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLG--SDYTNG 868

Query: 196 IPGIGYKTAALLLQEYGNLEN---ILINASRIKQKKRRENILEYAETARLSRKLV----M 248
           + G+G  ++  ++ E+GNL+N      N    K+K+  EN  E  +   L +KLV    +
Sbjct: 869 LKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFE-KD---LRKKLVNNEII 924

Query: 249 LRTDVPITIPLEHLILEDCNGP 270
           L  D P  +  +  +  + +  
Sbjct: 925 LDDDFPSVMVYDAYMRPEVDHD 946


>gi|151943533|gb|EDN61844.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
          Length = 1031

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R    E+ +  +  V+     FGIP I     EA+   A    +   +G    II+ 
Sbjct: 759 KDKRDS-DEVTMDMIKEVQELLSRFGIPYITAP-MEAEAQCAELLQLNLVDG----IITD 812

Query: 141 DKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G   D   G
Sbjct: 813 DSDVF--LFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLG--SDYTNG 868

Query: 196 IPGIGYKTAALLLQEYGNLEN---ILINASRIKQKKRRENILEYAETARLSRKLV----M 248
           + G+G  ++  ++ E+GNL+N      N    K+K+  EN  E  +   L +KLV    +
Sbjct: 869 LKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFE-KD---LRKKLVNNEII 924

Query: 249 LRTDVPITIPLEHLILEDCNGP 270
           L  D P  +  +  +  + +  
Sbjct: 925 LDDDFPSVMVYDAYMRPEVDHD 946


>gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1]
 gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1]
          Length = 381

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 88/248 (35%), Gaps = 37/248 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I N +++  + ++       +          +++K   I ++T D+          I   
Sbjct: 3   IANQENLAAFAERAMHSSVLAIDTEFLREKTYYAKLCLIQLATDDE--------TAIVDP 54

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI 489
            +V              + L  L     NE+ +K+ H    D  +L R  G+      D 
Sbjct: 55  FAV--------------DDLKVLAPVLRNENVMKLFHAGNQDLEILLREVGVLPHPLFDT 100

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + + +L         A++       T K+I     +      +SDSQ+ E+A ++   +
Sbjct: 101 QVAAALL-GHTQQIGYAALVHAECGVTLKKI--DSFTDWSRRPLSDSQL-EYAADDVVYL 156

Query: 550 LQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
            +++  +R +L+       L   +E L  P     ++ E          LK+VS    + 
Sbjct: 157 PRMYERMRAQLVELGRLSWLDRDFEDLADPARYAANERERY------KRLKRVSQLSRRQ 210

Query: 606 LLSLEENI 613
           L +  E  
Sbjct: 211 LSAAREVA 218


>gi|6321697|ref|NP_011774.1| Rad2p [Saccharomyces cerevisiae S288c]
 gi|131811|sp|P07276|RAD2_YEAST RecName: Full=DNA repair protein RAD2
 gi|172329|gb|AAA66928.1| RAD2 [Saccharomyces cerevisiae]
 gi|1323470|emb|CAA97287.1| RAD2 [Saccharomyces cerevisiae]
 gi|285812449|tpg|DAA08349.1| TPA: Rad2p [Saccharomyces cerevisiae S288c]
          Length = 1031

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R    E+ +  +  V+     FGIP I     EA+   A    +   +G    II+ 
Sbjct: 759 KDKRDS-DEVTMDMIKEVQELLSRFGIPYITAP-MEAEAQCAELLQLNLVDG----IITD 812

Query: 141 DKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G   D   G
Sbjct: 813 DSDVF--LFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLG--SDYTNG 868

Query: 196 IPGIGYKTAALLLQEYGNLEN---ILINASRIKQKKRRENILEYAETARLSRKLV----M 248
           + G+G  ++  ++ E+GNL+N      N    K+K+  EN  E  +   L +KLV    +
Sbjct: 869 LKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFE-KD---LRKKLVNNEII 924

Query: 249 LRTDVPITIPLEHLILEDCNGP 270
           L  D P  +  +  +  + +  
Sbjct: 925 LDDDFPSVMVYDAYMRPEVDHD 946


>gi|256272689|gb|EEU07666.1| Rad2p [Saccharomyces cerevisiae JAY291]
          Length = 1031

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R    E+ +  +  V+     FGIP I     EA+   A    +   +G    II+ 
Sbjct: 759 KDKRDS-DEVTMDMIKEVQELLSRFGIPYITAP-MEAEAQCAELLQLNLVDG----IITD 812

Query: 141 DKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G   D   G
Sbjct: 813 DSDVF--LFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLG--SDYTNG 868

Query: 196 IPGIGYKTAALLLQEYGNLEN---ILINASRIKQKKRRENILEYAETARLSRKLV----M 248
           + G+G  ++  ++ E+GNL+N      N    K+K+  EN  E  +   L +KLV    +
Sbjct: 869 LKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFE-KD---LRKKLVNNEII 924

Query: 249 LRTDVPITIPLEHLILEDCNGP 270
           L  D P  +  +  +  + +  
Sbjct: 925 LDDDFPSVMVYDAYMRPEVDHD 946


>gi|126731278|ref|ZP_01747085.1| ribonuclease D [Sagittula stellata E-37]
 gi|126708189|gb|EBA07248.1| ribonuclease D [Sagittula stellata E-37]
          Length = 385

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 72/195 (36%), Gaps = 22/195 (11%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +  T+++  +  + +     +          ++SK   I ++   + D+ +  V+ + 
Sbjct: 2   QTLTTTEELSDFCARAKGQPYITVDTEFLRERTYYSKLCLIQLALPGKGDEDAVLVDPMV 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
             LS                 L  L + F +E  +K+ H  + D  +    +G+  +   
Sbjct: 62  DGLS-----------------LDPLLELFRDESIVKVFHAARQDLEIFFIDHGVIPQPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V   G       ++ ++     ++++ KS + +    +      + +A+ +  
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVKR---IAKQQLDKSSRFTDWSRRPLTDAQKSYALADVT 160

Query: 548 VILQLWLLLRPKLIV 562
            + +++  L  KL  
Sbjct: 161 HLREIYEFLAAKLEE 175


>gi|156096711|ref|XP_001614389.1| endonuclease [Plasmodium vivax SaI-1]
 gi|148803263|gb|EDL44662.1| endonuclease, putative [Plasmodium vivax]
          Length = 407

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 136 TIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            ++S D D +   +P    +   K+++  I+ + ++ +  I  E+ +    L+G   D  
Sbjct: 279 IVVSDDTDALAFGAPNLIRFIMNKKKRHIINKDELLNELNINYEQFIDFCILSG--CDYS 336

Query: 194 PGIPGIGYKTAALLLQEYGNLENILIN 220
             IPGIG   A  ++++Y  +E  L +
Sbjct: 337 AKIPGIGPVKAHEIIKKYKTIETFLES 363


>gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW]
 gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW]
          Length = 399

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 27/217 (12%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P   F  +   + +   N   +  + +   + +     +   + +       +  +  K 
Sbjct: 9   PFLFFSNKKITMIKECQNPPHFRVVTDNTALLEVCNLAQQKSAVALDTEFMRVSTYFPKL 68

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             I +   +          T F                              N   LKI 
Sbjct: 69  GLIQLYDGEHVSLIDPLAITDFSP----------------------FVALLANPKVLKIL 106

Query: 467 HNIKYDKLV-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H+   D LV L  +    R   D  +M+  L  G S+  +A +AQ++L+    EI K   
Sbjct: 107 HSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNV---EIDKGAT 162

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +  I +       ++A  +   +L L+ +L  +L  
Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199


>gi|195123149|ref|XP_002006071.1| GI18754 [Drosophila mojavensis]
 gi|317374891|sp|B4KNM1|FEN1_DROMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|193911139|gb|EDW10006.1| GI18754 [Drosophila mojavensis]
          Length = 388

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 83/277 (29%), Gaps = 50/277 (18%)

Query: 29  KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
             +G P + + G   M ++ ++         +   +FD      +          R +  
Sbjct: 55  TVNGDPTSHLMG---MFYRTIRLLDNGIKPVY---VFDGKPPDLKAGELAKRAERREEAE 108

Query: 89  EMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYT 125
           + L                              +   +  G+P ++    EA+   A   
Sbjct: 109 KALKVATDAGDEAEIEKFNRRLVRVTKEHSNEAKELLKLMGVPYVDAPC-EAEAQCAALV 167

Query: 126 YIA---EKEGFAVTIIS-TDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
                       +  ++     L++ ++ +      VKE   D   V++   +  ++ + 
Sbjct: 168 KAGKVYATATEDMDALTFGSCKLLRYLTYSEARKMPVKEFSYD--KVLQGLELTSKEFID 225

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241
           L  L G   D    I GIG K A  L++ Y ++E IL N         +  + E      
Sbjct: 226 LCILMG--CDYCDSIKGIGPKRAIELIKTYRDIETILENID-----TSKYIVPENW---- 274

Query: 242 LSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFL 276
            + +        P         L     +   L+ FL
Sbjct: 275 -NYQRARELFVEPEVTDASTIDLKWTAPDEDGLVQFL 310


>gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20]
 gi|1173094|sp|P44442|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D
 gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20]
          Length = 399

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 27/217 (12%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P   F  +   + +   N   +  + +   + +     +   + +       +  +  K 
Sbjct: 9   PFLFFSNKKITMIKECQNPPHFRVVTDNTALLEVCNLAQQKSAVALDTEFMRVSTYFPKL 68

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             I +   +          T F                              N   LKI 
Sbjct: 69  GLIQLYDGEHVSLIDPLAITDFSP----------------------FVALLANPKVLKIL 106

Query: 467 HNIKYDKLV-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H+   D LV L  +    R   D  +M+  L  G S+  +A +AQ++L+    EI K   
Sbjct: 107 HSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNV---EIDKGAT 162

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +  I +       ++A  +   +L L+ +L  +L  
Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199


>gi|261206146|ref|XP_002627810.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
           SLH14081]
 gi|239592869|gb|EEQ75450.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
           SLH14081]
          Length = 814

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/381 (12%), Positives = 120/381 (31%), Gaps = 57/381 (14%)

Query: 214 LENILINASRIKQK--KRRENILEYAET--ARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           ++ +L  A     +     + +    E   A LS++     +  P    +          
Sbjct: 93  IDELLEKADACLDEFTGIIKKLSPSQEERGAALSKR--TPSSHFP---SVYDFGPSKIPK 147

Query: 270 PRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
           P+L+ F    +  +               I P+  ++  T   G     +   +T I+ S
Sbjct: 148 PQLL-FATRPKNNEDAPPFKPLLRSKPHAITPLSTNLGETGPDGTTTSYKHPYETEIRNS 206

Query: 330 QFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS 389
            + S +   S                      P    + T +   + +   + +L+    
Sbjct: 207 TYPSSAFAISA----------------PRESNPFETTTATFVDTLEGVHSMLAELKQTTE 250

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +  +                       D  S+      + +S              +E 
Sbjct: 251 IAIDLE--------------------HHDTHSYHGLVCLMQISTREKDWIVDTLKPWREE 290

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIAS 507
           L  L + F +   +K+ H    D + L R  G+ + G  D    +  L+   RS   +  
Sbjct: 291 LQILNEVFADPKIIKVLHGSTMDVIWLQRDLGLYLVGLFDTYHAAVALNYPKRS---LKF 347

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           + +K++++  +   K  + +    +     + ++A  +++ +L ++  +R  L+      
Sbjct: 348 LLEKFVNFQAE---KKYQMADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNSLVEHSTPD 404

Query: 568 ---VYERLDKPMIDVVSQMEI 585
              +   L++   + + + E 
Sbjct: 405 NNLIAYVLERSKQEALQRYER 425


>gi|221508520|gb|EEE34089.1| DNA-repair protein xp-G, putative [Toxoplasma gondii VEG]
          Length = 2004

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-- 155
            V    +AFG+P I   G EA+   A  T     +     +IS D D +   +        
Sbjct: 1429 VIALLRAFGVPFITAPG-EAEATAAYLTKQNLADA----VISDDSDALVFGAREIYRNFF 1483

Query: 156  -DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             +    E  +   +  K G+  ++++ L  L G   D   G+ GIG   A  +L+ Y +L
Sbjct: 1484 ENKKSVEMYEASFIAHKLGLGQQQLILLAMLLG--CDYTLGVKGIGIVNAVEVLRAYPSL 1541

Query: 215  ENILI 219
            E++  
Sbjct: 1542 ESLRA 1546


>gi|51013165|gb|AAT92876.1| YGR258C [Saccharomyces cerevisiae]
          Length = 1031

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 26/202 (12%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R    E+ +  +  V+      GIP I     EA+   A    +   +G    II+ 
Sbjct: 759 KDKRDS-DEVTMDMIKEVQELLSRLGIPYITAP-MEAEAQCAELLQLNLVDG----IITD 812

Query: 141 DKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G   D   G
Sbjct: 813 DSDVF--LFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLG--SDYTNG 868

Query: 196 IPGIGYKTAALLLQEYGNLEN---ILINASRIKQKKRRENILEYAETARLSRKLV----M 248
           + G+G  ++  ++ E+GNL+N      N    K+K+  EN  E  +   L +KLV    +
Sbjct: 869 LKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFE-KD---LRKKLVNNEII 924

Query: 249 LRTDVPITIPLEHLILEDCNGP 270
           L  D P  +  +  +  + +  
Sbjct: 925 LDDDFPSVMVYDAYMRPEVDHD 946


>gi|37719664|gb|AAR01941.1| flap endonuclease 1 [Plasmodium falciparum]
          Length = 648

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/465 (15%), Positives = 134/465 (28%), Gaps = 79/465 (16%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59
             +  +D S  +Y+   A              G   + I+G  +   +L++N  K     
Sbjct: 28  GRIIAIDASMSLYQFIIAIRDSEQYGNLTNESGETTSHISGLMSRSIRLMENGLK---PI 84

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKIPEML-----------------------LPQLP 96
           +   +FD      +          R K  E+L                         Q  
Sbjct: 85  Y---VFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEGNLEEIKKQSGRTVRVTRKQNE 141

Query: 97  LVRLATQAFGIPAIEIQGFEADDII----ATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
             +      GIP IE                  +    E     +  T   +  L +  T
Sbjct: 142 EAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATEDADALVFGTKILIRNLNANAT 201

Query: 153 CLYDTVKE--------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
              +  K          +I++E V+K   +  ++ +    L G   D    I GIG KTA
Sbjct: 202 SNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCILCG--CDYCDTIKGIGSKTA 259

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             L++EY  +E I+ N  + K +       + A    ++   V+ + D+ I         
Sbjct: 260 YNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKPFINPN-VLPKEDIKID-------W 311

Query: 265 EDCNGPRLISF------LKALEFTKLINRVAT-----------------TYDCDAANIEP 301
            +     L  F         L  T  INR+                   T       +E 
Sbjct: 312 NEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRLDNFFTACTKKSTKLIVEE 371

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361
              +      KG       D++      +    ++       ++  + +  E+ +   + 
Sbjct: 372 TKKEQTLPARKGKKRPPAGDKNKQKAVKRKIEQANANGHHKMKEENKSVDNEKNEDGIKS 431

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
             N  +   I +  D +    +       +      ++D F S  
Sbjct: 432 VDNEKNEDGIKSVDDEKNLDDEKNLDDEKNKDDEKKSLDNFSSNL 476


>gi|319426180|gb|ADV54254.1| ribonuclease D [Shewanella putrefaciens 200]
          Length = 369

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 28/206 (13%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           +  + +   +   V + +                +++K   I             K   +
Sbjct: 4   FHYVSDEVSLNALVAQYQQSKILVLDTEFVRTRTYYAKLGLI--------QAYDGKTLAL 55

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGF 486
              +++                L+ L     N + +K+ H+   D  V   YG       
Sbjct: 56  IDPVALPD--------------LAKLWALLANPNIIKLVHSCSEDLEVFAHYGQCQPVPL 101

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  + + +   G      A + +  L    + I K    +  I +        +A  + 
Sbjct: 102 FDSQIAASLCGMGHGV-GYAKLVETCLG---EVIDKGESRTDWIRRPLTEAQLAYAANDV 157

Query: 547 NVILQLWLLLRPKLIVEK-LLHVYER 571
             + QL+  L  KL+ +  L  +YE 
Sbjct: 158 LYLHQLYPQLEAKLVAQGRLNWLYEE 183


>gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus]
          Length = 886

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 112/354 (31%), Gaps = 41/354 (11%)

Query: 268 NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIK 327
           N P L          K + R  +    +     P  LD+            +       +
Sbjct: 192 NTPFLPKIFVKPNAQKPLPRALSKERRERPQDRPEDLDV-------PPALADFIHQQRTQ 244

Query: 328 TSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387
             +    +          +P    L++ Q     P++      I +   + +  +KL   
Sbjct: 245 QVEQDMFAHPYQYELDHFSPPDSVLQKPQPQLYRPVHETPCHFISSLDKLVELNEKLLNC 304

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
              +  +                          SF   T  + +S  T         L  
Sbjct: 305 QEFAVDLE--------------------HHSYRSFLGLTCLMQVSTRTEDFIIDTLELRS 344

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
           E+   L +   N   +K+ H    D   L + +G+ +    D    + +L+     H + 
Sbjct: 345 EMY-LLNESLTNPTIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN--LGRHSLD 401

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV-- 562
            + + + S     +   ++  +   +I     ++  +A ++++ +L ++  +R +L    
Sbjct: 402 HLLKLYCS-----VDSDKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 456

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
            +     + + +   D+  +  I  I  D+  L+    +  K+L + +   + L
Sbjct: 457 NEQPTQLQVVWQRSRDLCLKKFIKPIFTDESYLELYRKQ-KKHLNTQQLTAFQL 509


>gi|239610958|gb|EEQ87945.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ER-3]
 gi|327351664|gb|EGE80521.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 814

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/381 (12%), Positives = 120/381 (31%), Gaps = 57/381 (14%)

Query: 214 LENILINASRIKQK--KRRENILEYAET--ARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           ++ +L  A     +     + +    E   A LS++     +  P    +          
Sbjct: 93  IDELLEKADACLDEFTGIIKKLSPSQEERGAALSKR--TPSSHFP---SVYDFGPSKIPK 147

Query: 270 PRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
           P+L+ F    +  +               I P+  ++  T   G     +   +T I+ S
Sbjct: 148 PQLL-FATRPKNNEDAPPFKPLLRSKPHAITPLSTNLGETGPDGTTTSYKHPYETEIRNS 206

Query: 330 QFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS 389
            + S +   S                      P    + T +   + +   + +L+    
Sbjct: 207 TYPSSAFAISA----------------PRESNPFETTTATFVDTLEGVHSMLAELKQTTE 250

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +  +                       D  S+      + +S              +E 
Sbjct: 251 IAIDLE--------------------HHDTHSYHGLVCLMQISTREKDWIVDTLKPWREE 290

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIAS 507
           L  L + F +   +K+ H    D + L R  G+ + G  D    +  L+   RS   +  
Sbjct: 291 LQILNEVFADPKIIKVLHGSTMDVIWLQRDLGLYLVGLFDTYHAAVALNYPKRS---LKF 347

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           + +K++++  +   K  + +    +     + ++A  +++ +L ++  +R  L+      
Sbjct: 348 LLEKFVNFQAE---KKYQMADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNSLVEHSTPD 404

Query: 568 ---VYERLDKPMIDVVSQMEI 585
              +   L++   + + + E 
Sbjct: 405 NNLIAYVLERSKQEALQRYER 425


>gi|323354903|gb|EGA86736.1| Rad2p [Saccharomyces cerevisiae VL3]
          Length = 998

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R    E+ +  +  V+     FGIP I     EA+   A    +   +G    II+ 
Sbjct: 759 KDKRDS-DEVTMDMIKEVQELLSRFGIPYITAP-MEAEAQCAELLQLNLVDG----IITD 812

Query: 141 DKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G   D   G
Sbjct: 813 DSDVF--LFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLG--SDYTNG 868

Query: 196 IPGIGYKTAALLLQEYGNLEN---ILINASRIKQKKRRENILEYAETARLSRKLV----M 248
           + G+G  ++  ++ E+GNL+N      N    K+K+  EN  E  +   L +KLV    +
Sbjct: 869 LKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFE-KD---LRKKLVNNEII 924

Query: 249 LRTDVPITIPLEHLILEDCNGP 270
           L  D P  +  +  +  + +  
Sbjct: 925 LDDDFPSVMVYDAYMRPEVDHD 946


>gi|163742520|ref|ZP_02149906.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10]
 gi|161384105|gb|EDQ08488.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10]
          Length = 226

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 69/190 (36%), Gaps = 26/190 (13%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  L+     +    T  ++    +   + +S  D                + H  
Sbjct: 29  QNDLPDGLDLGPVVAIDCETMGLNPHRDRLCVVQLSGGDG---------------NAHMV 73

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYV 495
           Q + G++         L    E+ + LK+ H  ++D   + H +G          + S +
Sbjct: 74  QIAKGQSEAPN-----LCAMLEDLNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRL 128

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWL 554
           + +    H + ++ Q+ +     +I K ++ S     ++SD+Q+ ++A  +   + +L  
Sbjct: 129 VRTYTDRHGLRNLTQELIGV---DISKQQQMSDWGAAQLSDAQL-DYAASDVLHLHRLRA 184

Query: 555 LLRPKLIVEK 564
            L  +L  E 
Sbjct: 185 ALDKRLDRED 194


>gi|221487998|gb|EEE26212.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2004

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-- 155
            V    +AFG+P I   G EA+   A  T     +     +IS D D +   +        
Sbjct: 1429 VIALLRAFGVPFITAPG-EAEATAAYLTKQNLADA----VISDDSDALVFGAREIYRNFF 1483

Query: 156  -DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             +    E  +   +  K G+  ++++ L  L G   D   G+ GIG   A  +L+ Y +L
Sbjct: 1484 ENKKSVEMYEASFIAHKLGLGQQQLILLAMLLG--CDYTLGVKGIGIVNAVEVLRAYPSL 1541

Query: 215  ENILI 219
            E++  
Sbjct: 1542 ESLRA 1546


>gi|58265378|ref|XP_569845.1| 5' flap endonuclease [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108787|ref|XP_776937.1| hypothetical protein CNBC0040 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259619|gb|EAL22290.1| hypothetical protein CNBC0040 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226077|gb|AAW42538.1| 5' flap endonuclease, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 643

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 89/241 (36%), Gaps = 23/241 (9%)

Query: 98  VRLATQAFGIPAIEIQ-GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
            +       +P +     FEA+ + ++       +     + + D D++   +       
Sbjct: 409 CQHLLHLLRVPILHAPIPFEAEGLASSLCLSGLAD----YVGTEDSDVLGYSAKLLRNVS 464

Query: 157 TVKE--EKIDIEHVIKKWGIPPEKMVCLQALTG-DSIDNIPGIPGIGYKTAALLLQEYGN 213
           ++++  E +D E + +   +  ++ V    L G D+ +NIP    IG   +   ++EY +
Sbjct: 465 SLRKPLEVVDGEEIRQVVELEKDEWVDWMVLLGTDASNNIP---KIGPVNSLRFVKEYRS 521

Query: 214 LENIL-------INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI--- 263
           +ENIL          + +  +   + + E+ +     RKL       P     E L    
Sbjct: 522 IENILGAKPKLVDRLNVLHPEGAPKGMEEWMKGVEAGRKLFKELPPTPTLAEWEELWTGV 581

Query: 264 --LEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
             +E+ +   +  +L+     KL+            N   V  +  +    G   ET++ 
Sbjct: 582 GTVEETDDKVVQLWLEEKFGVKLVELEDADLYKLEGNESGVGGESESESQNGNEDETDVV 641

Query: 322 R 322
           R
Sbjct: 642 R 642


>gi|322829429|gb|EFZ32820.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 1036

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 31/222 (13%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-------EDIMLMSYVLDSGR--- 500
           S      ++   + +GHNIK+D L + R    +R F        D M   Y+L       
Sbjct: 590 SLFLPPLDDYDVI-VGHNIKFDLLHIWR-DAELRRFLSRGGKVWDTMYAEYLLTGHEVKL 647

Query: 501 -SSHDIASIAQKWLSYTRKEILKSRKSSIPID--KISDSQVQEHA---IENSNVILQLWL 554
                +  IA+ +   T K        +   +  +I  + + E+    +EN+ +I +   
Sbjct: 648 GRGAGLEDIAKSYGGQTPKLDAVKEAWAKGKETYEIPYALLSEYLHGDLENTELIFRKH- 706

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614
            +   L+  +   +        +   ++ME  G++ +  L    S E+   ++ L  ++ 
Sbjct: 707 -MERALLQRQ--AIICTARMDGLLCTTEMEYNGLKTNVQLAVTQSNELMGKVVELRNHLD 763

Query: 615 DLSGEK--------FNLSSPKQLGDILF-TKLKFPSGAKTKT 647
           D   ++        FN SS + L    F  KLK  + A+   
Sbjct: 764 DAIPKEIPPDCRKYFNWSSNQHLIAFFFGGKLKLNTNARESK 805


>gi|289620962|emb|CBI52696.1| unnamed protein product [Sordaria macrospora]
          Length = 821

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 81/228 (35%), Gaps = 33/228 (14%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
           ++I +   P+ ++ +R +     PI++ S   I   + + + +++L+     +  +    
Sbjct: 200 TEIKTTPYPEHVYKKR-EPKEFLPIDSTSAVWIDTYEGVLEMLEELKQAKEIALDLE--- 255

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
                              D  S+      + +S              +  L  L + F 
Sbjct: 256 -----------------HHDFRSYTGLLSLMQISTREKDWVIDTLQPWRHKLEVLNEVFA 298

Query: 459 NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT 516
           +   +K+ H    D + L R  G+ + G  D      VL   GRS          +L   
Sbjct: 299 DPKIVKVLHGAFMDAIWLQRDLGLYLVGLFDTYHACAVLGYPGRS--------LGYLLSK 350

Query: 517 RKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             E    +K  +   +I     ++  +A  +++ +L ++ +L  +LI 
Sbjct: 351 FAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIYDMLVNELIE 398


>gi|302657746|ref|XP_003020587.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
           HKI 0517]
 gi|291184437|gb|EFE39969.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
           HKI 0517]
          Length = 881

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 73/220 (33%), Gaps = 26/220 (11%)

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
             T      E+ +     P+ +     +   +D+   + +L+     +  +         
Sbjct: 222 ASTYPARVYEKAEPTMYTPVADSKAIFVETLEDVHAMLSQLKQAKEIAVDLE-------- 273

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                         D   +      + +S              ++ L  L + F +   +
Sbjct: 274 ------------HHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 321

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H    D + L R  G+ + G  D    +  L        +  +  +++ +   +  K
Sbjct: 322 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASALQ--LPKKSLKFLLHEYVGF---DADK 376

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +++    +   + + ++A  +++ +L ++  LR +L+ 
Sbjct: 377 QYQTADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLE 416


>gi|224006087|ref|XP_002292004.1| exonuclease [Thalassiosira pseudonana CCMP1335]
 gi|317376197|sp|B8C6S5|FEN1_THAPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|220972523|gb|EED90855.1| exonuclease [Thalassiosira pseudonana CCMP1335]
          Length = 390

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 75/226 (33%), Gaps = 34/226 (15%)

Query: 25  LLSRKHDGLPVNAIAG-FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKAN 83
           ++    DG   + I G F   +  + +  R          +FD     F++      +  
Sbjct: 58  MMLTNADGETTSHIQGIFNRTIRFISEGIRPVY-------VFDGKPPQFKSGELLKRREK 110

Query: 84  RPKIPEMLL---------PQLPLVRLATQA------FGIPAIE---IQGFEADDIIATYT 125
           R K  + L           Q    +   +A        I  +    +    A        
Sbjct: 111 RLKAEQALKAAEESGNIEEQDKQSKRLVRAGTKENEDCIKLLTLMGVPVIRAPCEAEAQA 170

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKM 179
               + G      + D D +   SP      T         ++I  +  I+   I  ++ 
Sbjct: 171 AALARSGKVYAAATEDMDALTFRSPVMVRKMTFANASKSDVQQIFYDKAIEGLEITHDQF 230

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225
           V L  L G   D    I GIG KTA  L++E+ N+E IL + +R K
Sbjct: 231 VDLCILLG--CDYCDTIKGIGPKTALKLIREHKNIETILKHLNREK 274


>gi|145628753|ref|ZP_01784553.1| ribonuclease D [Haemophilus influenzae 22.1-21]
 gi|144979223|gb|EDJ88909.1| ribonuclease D [Haemophilus influenzae 22.1-21]
          Length = 399

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 27/217 (12%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P   F  +   + +   N   +  I +   + +     +   + +       +  +  K 
Sbjct: 9   PFLFFSNKKITMIKECQNPPHFRVITDNAALLEICNLAQMKSAVALDTEFMRVSTYFPKL 68

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             I +   ++         T F                              N   LKI 
Sbjct: 69  GLIQLYDGERVSLVDPLAITDFSP----------------------FVALLSNPKVLKIL 106

Query: 467 HNIKYDKLV-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H+   D LV L  +    R   D  +M+  L  G S+  +A +AQ++L+    EI K   
Sbjct: 107 HSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNV---EIDKGAT 162

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +  I +       ++A  +   +L L+ +L  +L  
Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199


>gi|169767462|ref|XP_001818202.1| exosome complex exonuclease Rrp6 [Aspergillus oryzae RIB40]
 gi|83766057|dbj|BAE56200.1| unnamed protein product [Aspergillus oryzae]
          Length = 760

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 113/335 (33%), Gaps = 26/335 (7%)

Query: 247 VMLRTDVPITI-----PLEHLILEDCNG-----PRLISFLKALEFTKLINRVATTYDCD- 295
               TD+P+        +E       +       R  + L    FT +I R++ +     
Sbjct: 65  ATAGTDLPVPTLQDEDSIEDNWRGVVDVIDALLERADACLDE--FTGVIKRLSPSQQEQS 122

Query: 296 -AANIEPVVLDINTTENKGIA--IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
            A   +       T  + G +   + ++  +  +  +  S              P +  +
Sbjct: 123 AAKATKKTTSKFPTIYDYGPSKIPKPQLYFERQVDNADDSPFKPLLRTKPHAVVPLEKSV 182

Query: 353 ERLQKLS-QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           E   +   +  I    Y +           Q  E+  +     +    +       A  I
Sbjct: 183 ESSDRNPYETEIRAARYPESTYAVSSPVPYQPWESTTATFVDTLEGVKEMLEELKSAKEI 242

Query: 412 ST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           +  L+  D  S++     + +S              +E L  L + F +   LK+ H   
Sbjct: 243 AIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVFADPSILKVFHGSS 302

Query: 471 YDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
            D + L R  G+ + G  D    +  L+   RS   +  + QK++++   E  K  + + 
Sbjct: 303 MDIIWLQRDLGLYVVGMFDTYHAACALNYPKRS---LKFLLQKFVNF---EADKRYQMAD 356

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
              +     + ++A  +++ +L ++  LR +LI  
Sbjct: 357 WRIRPIPEGMFDYARSDTHYLLHIFDHLRNELIEN 391


>gi|326473059|gb|EGD97068.1| hypothetical protein TESG_04488 [Trichophyton tonsurans CBS 112818]
          Length = 898

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 85/255 (33%), Gaps = 33/255 (12%)

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKIN-------SEQTPQKLFLERLQKLSQYPINNDSY 368
           ++++      ++ S   S+ D T   N          T      E+ +     P+ +   
Sbjct: 174 LKSKPHALVGLEESLGGSIEDPTKPYNHPYEKEIEASTYPARVYEKAEPTMYTPVADSKA 233

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +   +D+   + +L+     +  +                       D   +      
Sbjct: 234 IFVETLEDVHAMLSQLKQAEEIAVDLE--------------------HHDSHVYHGLVCL 273

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
           + +S              ++ L  L + F +   +K+ H    D + L R  G+ + G  
Sbjct: 274 MQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLF 333

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D    +  L        +  +  +++ +   +  K  +++    +   + + ++A  +++
Sbjct: 334 DTFHAASALQ--LPKKSLKFLLHEYVGF---DADKQYQTADWRIRPLLAGMLDYARSDTH 388

Query: 548 VILQLWLLLRPKLIV 562
            +L ++  LR +L+ 
Sbjct: 389 FLLYIFDRLRNQLLD 403


>gi|162452521|ref|YP_001614888.1| hypothetical protein sce4245 [Sorangium cellulosum 'So ce 56']
 gi|161163103|emb|CAN94408.1| rnd [Sorangium cellulosum 'So ce 56']
          Length = 403

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/213 (9%), Positives = 74/213 (34%), Gaps = 29/213 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            +    ++ + +++     + +  +  + +  +  +   + ++  +        V+ + +
Sbjct: 8   LVEREGELARLIERAGRADALAVDVEANGLFVYRPRLCTVQLAFREGDGIAVGIVDALRV 67

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
            ++                    L +        K+ H++ +D  +L   G  + G  D 
Sbjct: 68  PVAP-------------------LARLLGAAGPPKVLHDLTFDARMLAEAGAPLGGAHDT 108

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + + +L    +   + ++    L     + L+  +       I D+++  +  ++   +
Sbjct: 109 SVAARMLGCAAT--GLGALLLSELDVKVDKQLQ--QHDWGRRPIEDAEL-RYLADDVRHL 163

Query: 550 LQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVS 581
           L     LR +L      L + E +++     ++
Sbjct: 164 L----PLRARLAERSGALGIDEEIEEECAYKLA 192


>gi|237832503|ref|XP_002365549.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
 gi|211963213|gb|EEA98408.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
          Length = 2004

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-- 155
            V    +AFG+P I   G EA+   A  T     +     +IS D D +   +        
Sbjct: 1429 VIALLRAFGVPFITAPG-EAEATAAYLTKQNLAD----AVISDDSDALVFGAREIYRNFF 1483

Query: 156  -DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             +    E  +   +  K G+  ++++ L  L G   D   G+ GIG   A  +L+ Y +L
Sbjct: 1484 ENKKSVEMYEASFIAHKLGLGQQQLILLAMLLG--CDYTLGVKGIGIVNAVEVLRAYPSL 1541

Query: 215  ENILI 219
            E++  
Sbjct: 1542 ESLRA 1546


>gi|311992979|ref|YP_004009846.1| RNaseH ribonuclease [Acinetobacter phage Acj61]
 gi|295815268|gb|ADG36194.1| RNaseH ribonuclease [Acinetobacter phage Acj61]
          Length = 354

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 22/180 (12%)

Query: 38  IAGFCNMLWKLLQ----NSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLP 93
           +    +M+   L+      + E        + +     +R +    YK NR    E    
Sbjct: 38  VHEVRHMILSTLKHNAFKFKNEGFNKVVICVDNARYGYWRRQEQDYYKRNRAIAREESAE 97

Query: 94  QLPL----------VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG-FAVTIISTDK 142
                         ++          +++   EADD IA         G F V IIS+D 
Sbjct: 98  TFDWDGYFEGLSTTIQELKDYMPYIVLDVNHAEADDCIAVLAKYLTTTGNFKVRIISSDG 157

Query: 143 DLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
           D  QL        Y  ++++ +    V  K    PE    ++ L GD  D +  I   G 
Sbjct: 158 DFTQLHKLQDVDQYSPMQKKFV---KVKTK---SPEMDCMVKILKGDRKDCVAAIKVRGD 211


>gi|241627391|ref|XP_002409855.1| endonuclease, putative [Ixodes scapularis]
 gi|215503262|gb|EEC12756.1| endonuclease, putative [Ixodes scapularis]
          Length = 384

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 82/253 (32%), Gaps = 34/253 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT-IISTDKDLMQLVSPTTCLYD 156
            +      G+P IE    EA+   A         G  V    + D D +   +     + 
Sbjct: 139 CKRLLGLMGVPYIEAPC-EAEAQCAELVK-----GGKVYGTATEDMDGLTFGTNVLLRHM 192

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           T  E      ++ ++E V+    +  ++ + L  L G   D    I GIG K A  L+++
Sbjct: 193 TYSEARKMPIKEFNLERVLSGLELNRDEFIDLCILLG--CDYCESIRGIGPKRAIELIKQ 250

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARLSRKL-----VMLRTDVPITIPLEHLILE 265
           + ++E I+ +         +  I E     + +R+L     V   +++        L   
Sbjct: 251 HKSIEKIISSIDTKACCDTKYTIPEDWPF-KEARQLFLEPEVTPASEI-------QLKWT 302

Query: 266 DCNGPRLISF------LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETE 319
           D +   L+ F                 ++    +            +  +E      ++E
Sbjct: 303 DPDEDGLVKFLCEENGFSEERIRNGAKKLLKGRNTTTQGRLDSFFKVVPSEGPSAKRKSE 362

Query: 320 IDRDTTIKTSQFS 332
              +   K    S
Sbjct: 363 SKDEQNKKKKGAS 375


>gi|241948847|ref|XP_002417146.1| exosome complex exonuclease RRP6, putative; ribsomal RNA processing
           protein 6, putative [Candida dubliniensis CD36]
 gi|223640484|emb|CAX44736.1| exosome complex exonuclease RRP6, putative [Candida dubliniensis
           CD36]
          Length = 776

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 92/293 (31%), Gaps = 34/293 (11%)

Query: 285 INRVATTYDCDAANIEPVVLDINTT--ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
           +       + +A   +P +              I  E   + +I+       +       
Sbjct: 144 LKFKVPIDNSEAGPFKPKLSSKPHALVPFNDSLINPEPVYEDSIEIIDPPFYAQPYEYEI 203

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
             Q      L +   +     +      +   +++ + V +L+     +  +        
Sbjct: 204 DNQPYPDAILAKSDPIPPKDWSTTKAIWVDTVEELHKMVPELKKSTEIAVDLE------- 256

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
                          D  S+      + +S    QD      + ++ L+ L + F + + 
Sbjct: 257 -------------HHDYRSYYGIVCLMQIS-SREQDWIVDTLVLRDDLTVLNEVFADPNI 302

Query: 463 LKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           +K+ H    D + L R  G+ +    D    S  L  G     +A + + +  +      
Sbjct: 303 VKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASRAL--GFPRFSLAYLLEVYAHFKT---- 356

Query: 522 KSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYER 571
            S++  +   +I      +  +A  +++ +L ++  L+ KL    KL  V   
Sbjct: 357 -SKQYQLADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDANKLAQVLYD 408


>gi|114764076|ref|ZP_01443315.1| exonuclease, putative [Pelagibaca bermudensis HTCC2601]
 gi|114543434|gb|EAU46449.1| exonuclease, putative [Roseovarius sp. HTCC2601]
          Length = 204

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 64/187 (34%), Gaps = 24/187 (12%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
                L+     +    T  ++    +   + +S  D                + H  Q 
Sbjct: 9   DLPDGLDLGPVVAIDCETMGLEPHRDRLCVVQLSGGDG---------------NAHLVQV 53

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD 497
           + G+          L +   +E  LK+ H  ++D   ++  +G          + S ++ 
Sbjct: 54  AKGQTEAPN-----LCRLLRDECVLKLFHYGRFDIAAMYNAFGALAAPVYCTKIASRMVR 108

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           +    H + ++ Q+ LS    +I K ++SS    +      +++A  +   + +L   L 
Sbjct: 109 TYTDRHGLKTLTQELLSV---DISKQQQSSDWGAETLTEAQRDYAASDVLHLHKLREALD 165

Query: 558 PKLIVEK 564
             L  E 
Sbjct: 166 GMLAREG 172


>gi|330955621|gb|EGH55881.1| ribonuclease D [Pseudomonas syringae Cit 7]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L    EN   +K+ H    D  VL R  G       D  L +  L+ G S    + + Q+
Sbjct: 9   LSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSM-GYSRLVQE 67

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            L     ++ K    S  +++        +A E++  + +L+ +LRP+L  +K   + + 
Sbjct: 68  VLDI---DLPKGETRSDWLERPLSETQISYAAEDAVHLAELFTILRPRLSDDKYAWLLDD 124


>gi|325118112|emb|CBZ53663.1| Exonuclease 3'-5' domain-like-containing protein 1, related
           [Neospora caninum Liverpool]
          Length = 355

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKL-VLHRYGISMRGFEDIMLMSYVL--DSGRSSH--DI 505
             LK+  E+ H +K+ H+ + D   +LH++ I +R   D  +   +     G +     +
Sbjct: 119 KKLKEILESPHIVKVCHDCREDASALLHQHTIRLRNVFDTQVAHQIWSEQKGETRFQASL 178

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPID------KISDSQVQEHAIENSNVILQLWLLLRPK 559
           + + + +L+     + K  KS++  D      +   + +  +A+   + +L L  +L   
Sbjct: 179 SELFRSFLNLRDGGVAKQAKSAMEADPSVWCQRPLPTDLLRYAVFGVSHLLDLAHILAFH 238

Query: 560 L 560
           L
Sbjct: 239 L 239


>gi|124800975|ref|XP_001349570.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
 gi|3845138|gb|AAC71842.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
          Length = 1516

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 76/226 (33%), Gaps = 29/226 (12%)

Query: 75   EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
            E+  +YK  +    E+       ++L    FGIP I+                       
Sbjct: 1192 ELIKEYKKLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDA--- 1248

Query: 135  VTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
              IIS D D++     T       K+   E  + + + +K G+  E+++ +  L G   D
Sbjct: 1249 --IISDDSDVLVFSGKTVIKNFFNKKKTVEVYEKKAIEEKLGLYQEELINISLLCG--CD 1304

Query: 192  NIPGIPGIGYKTAALLLQEYGNLEN--ILINASRIKQKKRRENILEYAETARLS------ 243
               G+ GIG   A  +++ + N E+  IL +      +K  +N+        L+      
Sbjct: 1305 YTIGVHGIGIVNALEIIKAFPNFEDLKILKDIVSNPFRKIDKNMYNEEIQQFLNTHKNYK 1364

Query: 244  -----------RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
                       R++        +   ++       +   +  FL  
Sbjct: 1365 LNWIFPNNFPDREVYKCFKYPKVCTDIKKFEWHVPDIKSITKFLHK 1410


>gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
 gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192]
 gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192]
 gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
          Length = 374

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 31/206 (15%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH--SKPIAIAISTLDQKDDTSFKVET 426
             I +   + Q  ++  T    +       +D F+  +  + +                 
Sbjct: 7   QWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVG---------------- 50

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG 485
                     +     + L  +  S   +  E+E  +K+ H    D  V  R  G     
Sbjct: 51  --------DGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVP 102

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  L +  L     S   + + ++ L     ++ K    S  + +        +A ++
Sbjct: 103 LFDTQLAAAYL-GMAHSMGYSKLVKEVLDI---DLPKDETRSDWLQRPLTEMQMRYAADD 158

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER 571
              + Q++L L  +L  EK   + E 
Sbjct: 159 VQHLAQVYLALDARLSEEKRAWLLED 184


>gi|326536933|ref|YP_004306340.1| putative exonuclease [Pseudomonas phage phiIBB-PF7A]
 gi|318054509|gb|ADV35685.1| putative exonuclease [Pseudomonas phage phiIBB-PF7A]
          Length = 304

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 21/182 (11%)

Query: 38  IAGFCNMLWKLL---------QNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88
           + G    + K +         +    E+      +        +R ++   YK NR    
Sbjct: 48  MFGTIKTIKKEITKALMKRWPKRFPDENSFELVDICVISGKGNWRLDVLETYKGNRVSKR 107

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI-AEKEGFAVTIISTDKDLMQL 147
           +      P    A       A+ + G E DD +          +   V  +S DKD   +
Sbjct: 108 KP--VGYPAYCDAMMDHYENAVRVDGREGDDTLGILMTNPGLVDCDRVIGVSCDKDFNTI 165

Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
             P    + T  E  ++ E    KW +        Q + GD+ D   GIPG+G      L
Sbjct: 166 --PGLFFWLTPMELVVNTEADADKWHMR-------QTMMGDTTDGYGGIPGVGEAFEGDL 216

Query: 208 LQ 209
           + 
Sbjct: 217 MA 218


>gi|321257144|ref|XP_003193485.1| flap endonuclease [Cryptococcus gattii WM276]
 gi|317459955|gb|ADV21698.1| flap endonuclease, putative [Cryptococcus gattii WM276]
          Length = 453

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 21/143 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTY--IAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
            +      GIP +   G EA+   A           G      S D D +   SP    +
Sbjct: 142 CKKLLSLMGIPVVTAPG-EAEAQCAELARAGKVYAAG------SEDMDTLTFHSPILLRH 194

Query: 156 DTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
            T  E       +I ++  ++   +  ++ + L  L G   D +    GIG KTA  L++
Sbjct: 195 LTFSEAKKMPISEIHLDVALRDLEMSMDQFIELCILLG--CDYLEPCKGIGPKTALKLMR 252

Query: 210 EYGNLENILINASRIKQKKRREN 232
           E+G L  ++ +     + K  E 
Sbjct: 253 EHGTLGKVVEHI----RGKMAEK 271


>gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated
           autoantigen homolog [Mus musculus]
          Length = 831

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 117/369 (31%), Gaps = 45/369 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 175 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIVEKLLHV--YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L ++  +R +L           + + +   D+  +  +  I  D+  L+    +  K+L 
Sbjct: 445 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQ-KKHLN 503

Query: 608 SLEENIYDL 616
           S +   + L
Sbjct: 504 SQQLTAFQL 512


>gi|79323071|ref|NP_001031418.1| 3'-5' exonuclease domain-containing protein / K homology
           domain-containing protein / KH domain-containing protein
           [Arabidopsis thaliana]
 gi|330252678|gb|AEC07772.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
           thaliana]
          Length = 342

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 78/242 (32%), Gaps = 36/242 (14%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F++  D ++    K + I      +  D     +   + ++   +          + I+ 
Sbjct: 41  FQLPADFLNPSPEKKLVIGF--DCEGVDLCRHGKLCIMQIAFSNAIYLVDVIEGGEVIMK 98

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGR-SSHDIAS-- 507
             K   E+ +  K+ H+ K D   L+ ++GI +    D  +   +++        +    
Sbjct: 99  ACKPALESNYITKVIHDCKRDSEALYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPLDDYI 158

Query: 508 -----IAQ-KWLSYTRKEILKSRKSSIPIDKISDSQVQEH----------AIENSNVILQ 551
                +A  ++   + +E     K  + +    D +   +          A ++   +L 
Sbjct: 159 SFVSLLADPRYCGISYEE-----KEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLY 213

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID-------QDLLKQVSAEISK 604
           L+  +  KL    L H+  R        +  M       D        D LK     + +
Sbjct: 214 LYHKMMGKLNQRSLWHLAVRGAL-YCRCLCCMNDADFA-DWPTVPPIPDNLKSEDQCLEE 271

Query: 605 NL 606
            +
Sbjct: 272 EI 273


>gi|328789753|ref|XP_395230.4| PREDICTED: DNA polymerase subunit gamma-1, mitochondrial [Apis
           mellifera]
          Length = 1093

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 90/302 (29%), Gaps = 81/302 (26%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDL--GQKIRRAFISPPTKKLISADYSQIELR 756
           +    ++  T+T R  ++EP             G ++R    +PP   ++ AD    EL 
Sbjct: 710 ILPLVAVCGTLTRR--AVEPTWMTASNSDTERVGSELRAMIQAPPGYNIVGADVDSQELW 767

Query: 757 IL-----AHIAKITP--------LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
           I      A+  KI          L     N  D+H + A  I            R  AK 
Sbjct: 768 ISSIIGDAYYKKIHGATPFGWMTLIGTKANETDMHSVTAKAI---------GISRNQAKI 818

Query: 804 INFSIIYGIS---PFRLATQLRIP----------------------RSEAADYIKR---Y 835
           IN++ IYG        L  Q                               +YI     Y
Sbjct: 819 INYARIYGAGQKFAETLLKQFNPSMTDSEATLKSRKMFTMTKGKKIYKLKPEYINNNNDY 878

Query: 836 FHRFPGIHEYI------EKTKNFVRQNGYV----ETIFGR--------RIHYDEINSP-- 875
              +     Y       +       +N +V      +F R              +NS   
Sbjct: 879 DKLYSSYEAYKLSKLHGKIISEMFEKNKWVGGSESAMFNRLEEIACNPHPVTPFLNSRLT 938

Query: 876 ----KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931
                S          IN  +Q  A D     ++S+   ++DH    +  L  HDE+ + 
Sbjct: 939 VALESSVNDEKFLPTKINWVVQSGAVDFLHLMLVSMKWLMKDH---ARFCLSFHDEVRYL 995

Query: 932 VP 933
           VP
Sbjct: 996 VP 997


>gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
           domain and an HRDc domain [Cryptosporidium parvum Iowa
           II]
 gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
           domain and an HRDc domain [Cryptosporidium parvum Iowa
           II]
          Length = 957

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 115/269 (42%), Gaps = 19/269 (7%)

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQY-PINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
            + T   N+E+ P   F  +      Y P++N   T I    D+++ +  +  +  + + 
Sbjct: 232 DEDTPNSNNEEIPNAHFNIKYSSPELYLPLSNTPLTFIKEPGDLRRMIDDILNLMESHY- 290

Query: 394 IITDTMDAFHSKPIAIAIST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
               +  + + +     ++  ++   + S+K     I LS  T         L  EI   
Sbjct: 291 ----SQSSMNEESSPFLLAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFNEI-QM 345

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L +   N   LK+ H   YD + L R + + +    D    + +L++    + + ++   
Sbjct: 346 LNELTANPKILKVLHGSDYDIIWLQRDFSVYIVNMFDTGQAARILNTP-GGYSLKNLLSI 404

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +      +I K  + +   ++   +++ E+A  +++ +L ++ +++  L    LLH ++ 
Sbjct: 405 Y---CSLDIDKRFQLADWRERPLSNELIEYARGDTHYLLYIYDIMKNLL----LLHRHKN 457

Query: 572 LDKPMIDVVSQMEITG--IQIDQDLLKQV 598
            + P++   + ME+    I +  D+++++
Sbjct: 458 TEPPVLASDAFMEVKDNLIILKPDIIERM 486


>gi|320101275|ref|YP_004176867.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
 gi|319753627|gb|ADV65385.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
          Length = 356

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 87/262 (33%), Gaps = 66/262 (25%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRK 54
              +  +DG + +Y+   A     R+ DG P         + ++G F   +  +    + 
Sbjct: 24  RGRVIAIDGYNALYQFLAAI----RQPDGTPLMDGSGRITSHLSGLFYRTINIVEAGIKP 79

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP---EMLLPQLPL-------------- 97
                    +FD      + +     +  R +     E  +    L              
Sbjct: 80  VY-------VFDGKPPELKAKEIERRRVVREEAARKYEEAVQAGDLESARRYAMMSARLT 132

Query: 98  ------VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
                  +    A GIP ++    E +   A         G A    S D D +   SP 
Sbjct: 133 DEMVRDAKALLDAMGIPWVQAPA-EGEAQAAYMARK----GDAYASASQDYDSLLFGSPR 187

Query: 152 TCLYDT---------------VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-G 195
                T               VK E I+++ ++ K G+  E +V +  L G   D  P G
Sbjct: 188 LVRNLTISGRRKLPRREEYVEVKPEVIELDKLLSKLGVTYENLVDIGILLG--TDYNPDG 245

Query: 196 IPGIGYKTAALLLQEYGNLENI 217
             GIG K A  L++ YG++E I
Sbjct: 246 FEGIGPKKALQLVKVYGSVEKI 267


>gi|156042752|ref|XP_001587933.1| hypothetical protein SS1G_11175 [Sclerotinia sclerotiorum 1980]
 gi|154695560|gb|EDN95298.1| hypothetical protein SS1G_11175 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 387

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 24/179 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A      +       +   D+   + +         
Sbjct: 153 CQKLLKLMGIPFIIAP-TEAEAQCAVLARAGKS------LCGGDEQRKEPIQEVI----- 200

Query: 158 VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
                  +E V+    +  ++ V L  L G   D +  IP +G  TA  L++E+G+LE +
Sbjct: 201 -------LEKVLAGLNMDRKQFVDLCILLG--CDYLDPIPKVGPHTALKLIREHGDLETL 251

Query: 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           +        KK R  I E       +R+L       P          E  +   L+ FL
Sbjct: 252 VAWIK--ADKKERYTIPEDWPYQD-ARELFFNPDVRPADHEDCDFKWEAPDIEGLVKFL 307


>gi|126465621|ref|YP_001040730.1| flap endonuclease-1 [Staphylothermus marinus F1]
 gi|166973707|sp|A3DMG2|FEN_STAMF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|126014444|gb|ABN69822.1| flap endonuclease 1 [Staphylothermus marinus F1]
          Length = 350

 Score = 53.9 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 109/326 (33%), Gaps = 77/326 (23%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRK 54
              + ++DG +    A Y      R+ DG P         + ++G F   +  L    + 
Sbjct: 24  RGKIVVIDGYN----ALYQFLTAIRQPDGTPLMDSQGRITSHLSGLFYRTINILENGIKP 79

Query: 55  ESIASHFAVIFDYPAVT-------FRNEI-------YPD------------YKANRPKIP 88
                    +FD             R +I       Y +            Y     K+ 
Sbjct: 80  AY-------VFDGKPPEIKAKEIEKRRKIREDASKKYEEALRKGDIEAARRYAMMSAKLT 132

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY----IAEKEGFAVTIISTDKDL 144
           + ++      +    A GIP I+             +      +  + +   +  + + +
Sbjct: 133 DEMVQDA---KKLLDAMGIPWIQAPAEGEAQAAYIVSKGDAWASASQDYDSLLFGSPRLI 189

Query: 145 MQLVS------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIP 197
             L        P   +Y  +K E I+++ +++K G+  E+++ +  L G   D  P G+ 
Sbjct: 190 RNLTISGKRKLPRKNVYIEIKPEIIELKKLLEKLGLTREQLIYVAILIG--TDYNPDGVK 247

Query: 198 GIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITI 257
           GIG K A  L++ Y  L+ IL    + +     E I+EY     L+  +           
Sbjct: 248 GIGPKKALQLVKAYKTLDKILKIIPKTEFPIEPEKIVEY----FLNPPVSTDY------- 296

Query: 258 PLEHLILEDCNGPRLISFL-KALEFT 282
               L     +  ++   L +  +F 
Sbjct: 297 ---KLEWRAPDESKIREILVEEHDFN 319


>gi|330509049|ref|YP_004385477.1| FLAP endonuclease [Methanosaeta concilii GP-6]
 gi|328929857|gb|AEB69659.1| FLAP endonuclease [Methanosaeta concilii GP-6]
          Length = 339

 Score = 53.9 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 89/258 (34%), Gaps = 61/258 (23%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKESIASHF 61
           +D  + +Y+       + R+ DG P         + ++G       L++   K       
Sbjct: 29  IDAFNTLYQ----FLSIIRQRDGTPLMDRQGRVTSHLSGLLYRTTNLIEAGVK------V 78

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKI-----------PEMLLPQL-------PLV---RL 100
           A +FD  A TF+     +    R K             +              ++   R 
Sbjct: 79  AFVFDGEAPTFKAVTLAERSEIRDKAAWAWEEARAAGEDGFKYAQAASRINSEIIEDGRR 138

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
              A G+P I+       +  A   Y+A +        S D D +   +P       +  
Sbjct: 139 LILAMGLPVIQAP----SEGEAQAAYMAARGDVD-YAGSQDYDSLLFGAPLVVRNLAITG 193

Query: 161 ---------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
                          E I++E  +   GI  +++V +  + G   D   G+  +G KTA 
Sbjct: 194 KRKLPRKNIYVDVEPEVINLEVGLANLGITHKQLVEIGIMCG--TDFNSGLERVGPKTAL 251

Query: 206 LLLQEYGNLENILINASR 223
            L++E G+LE+IL +   
Sbjct: 252 KLIREKGDLESILADRDD 269


>gi|82753264|ref|XP_727606.1| ribonuclease D [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483534|gb|EAA19171.1| Ribonuclease D [Plasmodium yoelii yoelii]
          Length = 510

 Score = 53.9 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
           N L  EI   +K   EN+  +K+ H+IK D+ +     I +    D  L +Y +D+    
Sbjct: 198 NNLNGEIPLSVKTVLENKKIIKVCHDIKNDQDMFLSKNIKINNVFD--LYNYSIDNYIYP 255

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             + ++ +K+L   +K + K  + S  + K  + +   +A  +S    ++++ L  +  +
Sbjct: 256 PSLQNLVKKYL---KKHLDKEYRLSNWLCKNLNEEQIMYAANDSYASREVYISLEKQNKI 312

Query: 563 EKLLHVYERLDKPMID 578
           ++   +    +   + 
Sbjct: 313 DQSFFINLNNENCYVK 328


>gi|311875225|emb|CBX44484.1| 5\'-3\' exonuclease-like protein [Erwinia phage phiEa1H]
 gi|311875346|emb|CBX45087.1| 5'-3'-exonuclease [Erwinia phage phiEa100]
          Length = 379

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 77/223 (34%), Gaps = 47/223 (21%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIY--PDYKANRPKIPEMLLPQLPLVRLA 101
           ML +++ ++  +S   +        A  FR  +     YK  RP           L R  
Sbjct: 86  MLNRMIGSADCDSARIYMT----NSAANFRLNLAFTHPYKGTRPASKPAFFQ--ELRRYL 139

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYI-----AEKEGFAV-----------TIISTDKDLM 145
            +      I   G EADD I+   +       E+EG  V            +IS DKDLM
Sbjct: 140 LETQD--TILAVGEEADDRISIEAWRMAREFCEEEGIEVGSEEHKAFADYVVISKDKDLM 197

Query: 146 QLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM----------------VCLQALTGDS 189
           Q+       +   K   +++E V  K+G    K                 +  Q L GD 
Sbjct: 198 QVPG----WHLHYKNNAMELEWVT-KFGYLRPKYKGDGKMKKLEGAGLKFLYAQMLMGDD 252

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           +DN  G+PG G       LQ       +      + +KK  + 
Sbjct: 253 VDNYKGLPGCGMVKVFDTLQPCKTEAELYFATLALYKKKYGDK 295


>gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi]
          Length = 526

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/377 (14%), Positives = 119/377 (31%), Gaps = 51/377 (13%)

Query: 201 YKTAALLLQEYGN--LENILINASRIKQ--KKRRENILEYAETARLSRKLVMLRTDVPIT 256
            +    +LQE+ +  LE I  N   +    KK    ++E+              +    +
Sbjct: 58  PEEQLEMLQEFNDNMLERIHSNLDEMAGVKKKVPTVLVEHEVQIASRTT---QNSSSSTS 114

Query: 257 IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAI 316
            PL+  ++   N  R     K L    ++N           +++P+ +     E      
Sbjct: 115 SPLKATLITGTNIARPQVNFKTLIDNSIVNPFVPRIRDKPNSLKPLAV---LPEYDDAGN 171

Query: 317 ETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376
                     +  +F    D    +    TPQ+            P++      I +   
Sbjct: 172 IVSYLHPYEFELDRFQPAKDVFVPV----TPQEPL----------PLDTTELLFIDHESQ 217

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
           +   +  L+     +  +                          +F+  T  + LS    
Sbjct: 218 LSALLSDLKAAPQIAIDLE--------------------HHSYRTFQGFTCLMQLSTRK- 256

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV 495
           +D        ++ L  L + F +   LK+ H    D   L R  G+ +    D    + V
Sbjct: 257 KDYIVDTLALRDELHVLNEVFTDPRKLKVLHGAISDIEWLQRDLGLYLVNMFDTGEAARV 316

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L    S   +  + + +      E  K+ + +    +       E+A ++++ +L ++  
Sbjct: 317 LQ--FSRIGLQFLLKHY---CNIETDKAYQLADWRMRPLPPAFIEYARKDTHYLLYIYDR 371

Query: 556 LRPKLIVEKLLHVYERL 572
           +R  L+ +    + + +
Sbjct: 372 IRNDLLEKGGDSLLQTV 388


>gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1]
 gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1]
          Length = 399

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 71/219 (32%), Gaps = 27/219 (12%)

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
             P   FL +   + +   N   +  I +   + +     +   + +       +  +  
Sbjct: 7   NIPFLFFLNKKITMIKECQNPPHFRVISDNAALLEICNLAQQQSAVALDTEFMRVSTYFP 66

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
           K   I +   ++         T F                              N   LK
Sbjct: 67  KLGLIQLYDGERVSLIDPLAITDFSP----------------------FVALLANPKVLK 104

Query: 465 IGHNIKYDKLV-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           I H+   D LV L  +    R   D  +M+  L  G S+  +A +AQ++L+    EI K 
Sbjct: 105 ILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNI---EIDKG 160

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
              +  I +       ++A  +   +L L+ +L  +L  
Sbjct: 161 ATLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199


>gi|18400976|ref|NP_565612.1| 3'-5' exonuclease domain-containing protein / K homology
           domain-containing protein / KH domain-containing protein
           [Arabidopsis thaliana]
 gi|13605561|gb|AAK32774.1|AF361606_1 At2g25910/F17H15.6 [Arabidopsis thaliana]
 gi|18491139|gb|AAL69538.1| At2g25910/F17H15.6 [Arabidopsis thaliana]
 gi|20197359|gb|AAC42241.2| expressed protein [Arabidopsis thaliana]
 gi|21554875|gb|AAM63716.1| unknown [Arabidopsis thaliana]
 gi|330252677|gb|AEC07771.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
           thaliana]
          Length = 341

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 78/242 (32%), Gaps = 36/242 (14%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F++  D ++    K + I      +  D     +   + ++   +          + I+ 
Sbjct: 41  FQLPADFLNPSPEKKLVIGF--DCEGVDLCRHGKLCIMQIAFSNAIYLVDVIEGGEVIMK 98

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGR-SSHDIAS-- 507
             K   E+ +  K+ H+ K D   L+ ++GI +    D  +   +++        +    
Sbjct: 99  ACKPALESNYITKVIHDCKRDSEALYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPLDDYI 158

Query: 508 -----IAQ-KWLSYTRKEILKSRKSSIPIDKISDSQVQEH----------AIENSNVILQ 551
                +A  ++   + +E     K  + +    D +   +          A ++   +L 
Sbjct: 159 SFVSLLADPRYCGISYEE-----KEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLY 213

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID-------QDLLKQVSAEISK 604
           L+  +  KL    L H+  R        +  M       D        D LK     + +
Sbjct: 214 LYHKMMGKLNQRSLWHLAVRGAL-YCRCLCCMNDADFA-DWPTVPPIPDNLKSEDQCLEE 271

Query: 605 NL 606
            +
Sbjct: 272 EI 273


>gi|58266500|ref|XP_570406.1| flap endonuclease [Cryptococcus neoformans var. neoformans JEC21]
 gi|134111280|ref|XP_775782.1| hypothetical protein CNBD5110 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74685877|sp|Q5KIZ6|FEN1_CRYNE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|50258446|gb|EAL21135.1| hypothetical protein CNBD5110 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226639|gb|AAW43099.1| flap endonuclease, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 453

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 21/143 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTY--IAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
            +      GIP +   G EA+   A           G      S D D +   SP    +
Sbjct: 142 CKKLLSLMGIPVVTAPG-EAEAQCAELARAGKVYAAG------SEDMDTLTFNSPILLRH 194

Query: 156 DTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
            T  E       +I ++  ++   +  ++ + L  L G   D +    GIG KTA  L++
Sbjct: 195 LTFSEAKKMPISEIHLDVALRDLEMSMDQFIELCILLG--CDYLEPCKGIGPKTALKLMR 252

Query: 210 EYGNLENILINASRIKQKKRREN 232
           E+G L  ++ +     + K  E 
Sbjct: 253 EHGTLGKVVEHI----RGKMAEK 271


>gi|322815315|gb|EFZ23992.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
          Length = 713

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 99/284 (34%), Gaps = 29/284 (10%)

Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
           L F   + R +   D     + P +   +  +N           +   +      +    
Sbjct: 125 LTFGSELQRSSFAVDGGGCVLRPQLTFEHPVDNSPTPFCPVYYDEKGERHVGQPGIHPFA 184

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
             I +   P++  + R++     P+       +  T D+++ V  L      +  +    
Sbjct: 185 ELIKNMSMPEEQLIRRVET-PYLPLAQCPLRFVDATVDLEEVVALLLKEKEIAVDLE--- 240

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
                                 S++  T  + +S   S+D        + ++  L   F 
Sbjct: 241 -----------------HHSFYSYQGFTCLMQIST-RSEDILIDCLKLRSLMHLLAPVFL 282

Query: 459 NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           N + LK+ H  + D   L + +G+ +  F D  +    L +    H +A     +    +
Sbjct: 283 NPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIA---LQTLHMPHGLAFAVDHF---CQ 336

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            ++ K  +++    +   +++  +A ++++ +L ++  L+  L+
Sbjct: 337 VKLDKKYQTADWRIRPIPAEMVTYARQDTHFLLYVYDRLKTLLL 380


>gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016]
 gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016]
          Length = 374

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 31/206 (15%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH--SKPIAIAISTLDQKDDTSFKVET 426
             I +   + Q  ++  T    +       +D F+  +  + +                 
Sbjct: 7   QWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVG---------------- 50

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG 485
                     +     + L  +  S   +  E+E  +K+ H    D  V  R  G     
Sbjct: 51  --------DGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVP 102

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  L +  L     S   + + ++ L     ++ K    S  + +        +A ++
Sbjct: 103 LFDTQLAAAYL-GMAHSMGYSKLVKEVLDI---DLPKDETRSDWLQRPLTEMQMRYAADD 158

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER 571
              + Q++L L  +L  EK   + E 
Sbjct: 159 VQHLAQVYLALDARLSEEKRAWLLED 184


>gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1]
 gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 374

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 31/206 (15%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH--SKPIAIAISTLDQKDDTSFKVET 426
             I +   + Q  ++  T    +       +D F+  +  + +                 
Sbjct: 7   QWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVG---------------- 50

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG 485
                     +     + L  +  S   +  E+E  +K+ H    D  V  R  G     
Sbjct: 51  --------DGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVP 102

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  L +  L     S   + + ++ L     ++ K    S  + +        +A ++
Sbjct: 103 LFDTQLAAAYL-GMAHSMGYSKLVKEVLDI---DLPKDETRSDWLQRPLTEMQMRYAADD 158

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER 571
              + Q++L L  +L  EK   + E 
Sbjct: 159 VQHLAQVYLALDARLSEEKRAWLLED 184


>gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 311

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 75/198 (37%), Gaps = 10/198 (5%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T I    + ++  ++L  +   +  +   +  +F      + +S  D         +T  
Sbjct: 116 TWIDTVDEWRRLGERLAHVTEIALDLEAHSYRSFAGMVCLLQLSFRDHHYHDKDDHDTPN 175

Query: 429 IDLSVHTSQDSTGKNTLTKEIL-----SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
            +   + +  +     +   +L       L     N   +K+ H    D   L R +G+ 
Sbjct: 176 DNDDTNDNSPTVHNFLIDTIVLKPYLNEVLLPVLTNPDVVKVLHGADSDIAWLQRDFGLY 235

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           +    D M  +  L   R+S+  A + Q ++     +  KS + +    +     +Q++A
Sbjct: 236 IVNLFDTMRAARALKFPRASY--AYVLQHYVDGLHAD--KSAQLADWRVRPLPEALQQYA 291

Query: 543 IENSNVILQLWLLLRPKL 560
           I+++  +L ++  +R  L
Sbjct: 292 IQDTAYLLDIYDRMRYDL 309


>gi|240254568|ref|NP_850189.5| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 891

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 66/198 (33%), Gaps = 27/198 (13%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           DSY  +     +++  + L      +      ++ +F      I IST +          
Sbjct: 117 DSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHE---------- 166

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                      +D         +++S L+  F + +  K+ H    D + L R + I + 
Sbjct: 167 -----------EDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVV 215

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D      VL   +    +A + +        ++L   +      +    ++  +A  
Sbjct: 216 NMFDTAKACEVL--SKPQRSLAYLLETVCGVATNKLL---QREDWRQRPLSEEMVRYART 270

Query: 545 NSNVILQLWLLLRPKLIV 562
           +++ +L +   L  +L  
Sbjct: 271 DAHYLLYIADSLTTELKQ 288


>gi|68073827|ref|XP_678828.1| 3'-5' exonuclease [Plasmodium berghei strain ANKA]
 gi|56499420|emb|CAI00231.1| 3'-5' exonuclease, putative [Plasmodium berghei]
          Length = 383

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
              YLK+ FEN+  +K+ H+ + D  +L   Y I++    D  +  Y L   +S  ++  
Sbjct: 112 FAKYLKELFENKSIIKVTHDCREDCSILFNQYNINLNNIFDTQIA-YTLILKKSKKELYQ 170

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA---IENSNVILQLWLLLRPKLIVEK 564
           I+  +     K +  +    I   KI     + +    I    +   +  +L  K ++  
Sbjct: 171 IS--YDDLLYKCLFLNNNHKIYFHKIISLNNKIYLKRPISKELIHYAVQDVLYLKPLMLN 228

Query: 565 LLHVYERLD 573
           L+ V   ++
Sbjct: 229 LIEVLRNIE 237


>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 892

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 66/198 (33%), Gaps = 27/198 (13%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           DSY  +     +++  + L      +      ++ +F      I IST +          
Sbjct: 117 DSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHE---------- 166

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                      +D         +++S L+  F + +  K+ H    D + L R + I + 
Sbjct: 167 -----------EDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVV 215

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D      VL   +    +A + +        ++L   +      +    ++  +A  
Sbjct: 216 NMFDTAKACEVL--SKPQRSLAYLLETVCGVATNKLL---QREDWRQRPLSEEMVRYART 270

Query: 545 NSNVILQLWLLLRPKLIV 562
           +++ +L +   L  +L  
Sbjct: 271 DAHYLLYIADSLTTELKQ 288


>gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
 gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
          Length = 836

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           E      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 415 EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSIT 474

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +  G       ++   + F+ +      GHN+++D       L R G+    +   D +
Sbjct: 475 DEMVGAADDEAVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTL 532

Query: 491 LMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +S +L   +S H + S+A+K+   L +  +    +  +   + K+ D+  +++
Sbjct: 533 EVSRLLHPEQSRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMFKLLDAFNKKY 586


>gi|325183710|emb|CCA18169.1| exosome complex exonuclease RRP6like protein putativ [Albugo
           laibachii Nc14]
          Length = 770

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 102/324 (31%), Gaps = 24/324 (7%)

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           ++ +   TD  +      L  E     +  + L+          +       A +     
Sbjct: 85  KEWITDCTDHLLDETFRLLQGEAPRKEKKTANLQ----------MENCSAEFAKSSTNSK 134

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
                 + +    +          T+ F S         +   P               +
Sbjct: 135 SQKKFQKMEMPKPQQSFQESIDNSTAPFVSKLSSKPHAIATSFPIHEEDASFHPYYNELV 194

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI----AIAIST-LDQKD 418
                   +   ++     K+    ++   +  D+ D+F    +    A A++  L+  +
Sbjct: 195 GLKIPDWQLEMSEMDHLFDKISLQKASFLWV--DSADSFQQMLLILQEAHALAIDLEHHN 252

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             S+   T  + +S H + D        +  L  L + F +   LK+ H    D L L R
Sbjct: 253 YRSYLGLTCLMQISTH-NHDFLVDTLALRSSLQLLNQVFCDPQKLKVLHGADMDILWLQR 311

Query: 479 -YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
             G+ +    D    + VL        +A + +K       E  K  + +    +    +
Sbjct: 312 DLGLYVVNMFDTGRAARVLQ--LPRFSLAYLLKKC---CDIEADKQYQLADWRQRPLTEE 366

Query: 538 VQEHAIENSNVILQLWLLLRPKLI 561
           +  +A E++  +L ++  ++ +L+
Sbjct: 367 MTRYAREDTRYLLFIYRKMKEELL 390


>gi|317011605|gb|ADU85352.1| DNA polymerase I [Helicobacter pylori SouthAfrica7]
          Length = 67

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 2  QKENHLFLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR 53
           KE  L L+D  ++++R++Y  A         G P   + G   M+ K  ++ +
Sbjct: 6  TKEGTLALIDTFAYLFRSYYMSAKTKPLTNDKGFPTGLLTGLVGMVKKFYKDKK 59


>gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 341

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 15/168 (8%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L+     SF+  T  + +S  T         L   +  +L+  F +    K+ H    D 
Sbjct: 18  LEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDI 77

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           + L R +GI +    D    S VL      + +  + Q +   T     K  +++    +
Sbjct: 78  VWLQRDFGIYICNMFDTGQASRVL--KMERYSLQHLLQHFCGVTAN---KEYQNADWRAR 132

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV---------EKLLHVYER 571
                + ++  E+++ +L ++ L+R KL           + LL VY+R
Sbjct: 133 PLPDVMIKYGREDTHYLLYIYDLMRIKLFELSKESESPDDPLLEVYQR 180


>gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 466

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 69/208 (33%), Gaps = 32/208 (15%)

Query: 371 IVNTKDIQQWVQK-LETIGSASFKIITDTMDAFHSKPIAIAIS------TLDQKDDTSFK 423
           +++ +     +   L  +    F   T  +     + + I          ++ +   +  
Sbjct: 255 LLDREPPPSLIDCPLRDLVYCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLV 314

Query: 424 VETIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFE-NEHFLKIGHNIKYDKLVLHRY-- 479
                I  +       T K  + +  I    ++FFE ++  + + HN  +D   L R+  
Sbjct: 315 DPGGPIPRASSKIHGITDKMVMGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEK 374

Query: 480 --GISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G++      D +L+S ++      H +  + ++ L    +   K  + +         
Sbjct: 375 AMGVAFDHPIVDTVLVSAIIFGTTERHMLDVVCER-LGIRIE---KKDRHT--------- 421

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK 564
                A+ ++ V  +    + P L    
Sbjct: 422 -----ALGDARVTAEAMKRMLPLLEARG 444


>gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 216

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L     + + +KI H  ++D  V+  Y G+         + S ++ +    H +  +  +
Sbjct: 74  LVSVLSDPNIIKIFHFARFDIAVMRYYLGMWANPCYCTKIASKLVRTYTDHHGLKELCYE 133

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            L      + K ++SS    +   S+   +A  +   +  L   L   L  E    +
Sbjct: 134 LLGVK---LNKMQQSSDWGRESLTSEQLNYAASDVIYLHALKSKLDAMLQRENKREL 187


>gi|330504002|ref|YP_004380871.1| ribonuclease D [Pseudomonas mendocina NK-01]
 gi|328918288|gb|AEB59119.1| ribonuclease D [Pseudomonas mendocina NK-01]
          Length = 377

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I++   + +     + +   +       +D F+     + +S  D          + +
Sbjct: 6   HWILDDAGLAEHCAAWQALPFVALDTEFMRVDTFYPIAGLLQVSGGDGAYLIDPLRISDW 65

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
              +                         E  + +K+ H+   D  V  R  G       
Sbjct: 66  RPFAA----------------------LLEAPNVVKVLHSCSEDLEVFLRLSGSLPAPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q  L     E+ K    S  + +        +A E+  
Sbjct: 104 DTQLAAGYLNLGFSM-GYSRLVQALLDI---ELPKGETRSDWLQRPLSELQVRYAAEDVL 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            +++++  L  +L  +K+  V E 
Sbjct: 160 HLVEVYRALMARLAPQKVEWVLED 183


>gi|307594203|ref|YP_003900520.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
           14429]
 gi|307549404|gb|ADN49469.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
           14429]
          Length = 349

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 90/261 (34%), Gaps = 61/261 (23%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKES 56
           N +  +D  + +Y+ F A     R+ DG P         + ++G    L++ +       
Sbjct: 25  NRIVALDAYNALYQ-FLA---SIRQPDGTPLMDSKGRITSHLSGL---LYRTINFLENRI 77

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL---------------- 100
              +   +FD        E   +    R    E +   + L+                  
Sbjct: 78  WPVY---VFDGKPP---EEKTLEIARRRKVREEAMDKWVKLLEEGKREEARKYAQRALFL 131

Query: 101 ----------ATQAFGIPAI--EIQGFEADDIIA--TYTYIAEKEGFAVTIISTDKDLMQ 146
                       +  GIP +     G     +IA     + A  + +   +    + +  
Sbjct: 132 TDDMVEDAKKLLRLMGIPVVQAMADGEAQAAVIAREGKAWAAGSQDYDSLLFGAPRLVRN 191

Query: 147 LVS------PTTCLYDTVKEEKIDIEHVIKKWGIPPE-KMVCLQALTGDSIDNIP-GIPG 198
           L        P    Y  +K E I++  V+K   +    +++ L  L G   D  P G+PG
Sbjct: 192 LAITGRRKLPNKDEYIEIKPEIIELNEVLKALKLKDRTQLIDLAILLG--TDLNPDGVPG 249

Query: 199 IGYKTAALLLQEYGNLENILI 219
           IG + A  L+QE+G LE +L 
Sbjct: 250 IGPQRALRLIQEFGGLEKLLQ 270


>gi|293392299|ref|ZP_06636633.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952833|gb|EFE02952.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 385

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 30/224 (13%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           N   ++ + +  ++ +  Q      + +       +   + K   I +   DQ       
Sbjct: 10  NPPHFSVVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDQV------ 63

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              +   L +                 S   +   + + +KI H    D  V  RY   +
Sbjct: 64  --ALIDPLPIQD--------------FSPFIELLADTNLVKILHACSEDLDVFQRYFQQL 107

Query: 484 -RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
            R   D  +M++ L     S   A++ Q +      EI K    +  + +       ++A
Sbjct: 108 PRPMCDTQVMAHFL-GFAGSTGFATLVQHYFQI---EIDKGASRTDWLARPLSDTQLQYA 163

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
             +   +L L+  ++ +L           ++     ++++   T
Sbjct: 164 AADVWYLLPLYGQMQQQL---TQTEWQSAVENECEFLLNKRAQT 204


>gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana]
          Length = 327

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 66/198 (33%), Gaps = 27/198 (13%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           DSY  +     +++  + L      +      ++ +F      I IST +          
Sbjct: 117 DSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHE---------- 166

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                      +D         +++S L+  F + +  K+ H    D + L R + I + 
Sbjct: 167 -----------EDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVV 215

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D      VL   +    +A + +        ++L   +      +    ++  +A  
Sbjct: 216 NMFDTAKACEVL--SKPQRSLAYLLETVCGVATNKLL---QREDWRQRPLSEEMVRYARX 270

Query: 545 NSNVILQLWLLLRPKLIV 562
           +++ +L +   L  +L  
Sbjct: 271 DAHYLLYIADSLTTELKQ 288


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 114/330 (34%), Gaps = 35/330 (10%)

Query: 209 QEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC- 267
           Q + ++E ++ +   +K  K    IL    +   S  L+ + +     I +   I +   
Sbjct: 238 QRFVSMEGVVFDV-EVKILKTGRRILNAKISDYTSAFLIQMFSRTEEDIAIFDAIRKGMW 296

Query: 268 -----NGPRLISFLKALEFT-KLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
                +      F + L    + +  ++     D A+ + V L ++T  +   A  +  D
Sbjct: 297 LRVRGDLQMDDRFARDLVLNVRDLEEISKAKRQDNADKKRVELHVHTNMSMLDATNSISD 356

Query: 322 RDTTIKTSQFSSLS----DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI 377
                K    ++++                 K    ++    +  I +D      N   I
Sbjct: 357 FTNQAKDWGHTAIAVTDHATLQAYPEASGAAKSTGLKMIYGVEANIVDDGVPIAYNPDHI 416

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIF 428
           +     L+      F + T  + A +   I +A         I T ++  +    +    
Sbjct: 417 E-----LKEATYVVFDVETTGLSAIYDNIIELAAVKMQNGNVIDTFEEFINPGRPLSATI 471

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGIS-- 482
           IDL+  T           KE++S  +++  +   + + HN  +D        +R+G    
Sbjct: 472 IDLTGITDA-MLANTRTEKEVISDFREWVGDA--IFVAHNASFDMGFIDTAYNRHGFEKS 528

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
                D + MS  L     SH + ++A+++
Sbjct: 529 HNAVIDTLEMSRFLHPNLKSHRLNTLAKRY 558


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/396 (13%), Positives = 126/396 (31%), Gaps = 42/396 (10%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 418 EALNEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 475

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T E++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 476 LTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPVI 535

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-- 545
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 585

Query: 546 SNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 586 KEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 643

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL------ 657
           + +  +  +      E   + S    G+I    ++          ++    + +      
Sbjct: 644 ERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYA 703

Query: 658 ----EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713
               +++   ++ + + I    ++ K       +  N      + V     L ++M G  
Sbjct: 704 PLIEQELVKNEHDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDVIYRKILINSMGGAN 763

Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
                +L ++  +T         F+   T K I  D
Sbjct: 764 PLNRHSLPDVHFRTTDEMLTAFHFLGEETAKEIVVD 799


>gi|145546103|ref|XP_001458735.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426556|emb|CAK91338.1| unnamed protein product [Paramecium tetraurelia]
          Length = 872

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 36/216 (16%)

Query: 91  LLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP 150
           +  +   +R     FGIP I   G EA+   A      ++ G    +I+ D D+    + 
Sbjct: 558 MQQKFEDIRQLLALFGIPWIIAPG-EAEAQCAYL----QQNGLVDCVITEDSDVFLFGAT 612

Query: 151 TTCLYDTVKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
                    +      D +++ +  G+  ++++ L    G   D   GI G+G   A  +
Sbjct: 613 KVLKGFFESKTSLVYYDTQYIKEDLGLNRDQLIYLALFLG--SDYTLGIKGVGIVNAMEI 670

Query: 208 LQEYGNLENI--------------------LINASRIKQKKRRENILEYAETARL----- 242
           ++ + N+E +                      N    K++  +E    Y +   L     
Sbjct: 671 VEVFDNVEALKRFTSWASKADVLLENASSHYENIPE-KERIYKEFHKNYKKYWELPSDFP 729

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           + +++       +   LE          ++I F   
Sbjct: 730 NIEVINGYMKPRVDESLEQFTWGQPAVEKIIEFCSQ 765


>gi|323454533|gb|EGB10403.1| hypothetical protein AURANDRAFT_62671 [Aureococcus anophagefferens]
          Length = 3786

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 449  ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--GISMRG----FEDIMLMSYVLDSGRSS 502
            + + L     NE   KIG N + D   L +   G+ ++G      D  L +  L S +  
Sbjct: 2961 VPAGLAAILRNEGIEKIGVNFQGDITRLTKQYEGVEVKGEIIELSD--LANDTLKSQKRR 3018

Query: 503  HDIASIAQKWLSYTR-KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW-LLLRPKL 560
              +A +  + L+ T  KE+    +     +   D   Q++A  ++     +   LL PKL
Sbjct: 3019 WSLADLVMELLNRTLDKELGGGGRYGRWDEWPLDQDAQQYAANDAAATFMVHAALLDPKL 3078


>gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 872

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 66/198 (33%), Gaps = 27/198 (13%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           DSY  +     +++  + L      +      ++ +F      I IST +          
Sbjct: 117 DSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHE---------- 166

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                      +D         +++S L+  F + +  K+ H    D + L R + I + 
Sbjct: 167 -----------EDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVV 215

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D      VL   +    +A + +        ++L   +      +    ++  +A  
Sbjct: 216 NMFDTAKACEVL--SKPQRSLAYLLETVCGVATNKLL---QREDWRQRPLSEEMVRYART 270

Query: 545 NSNVILQLWLLLRPKLIV 562
           +++ +L +   L  +L  
Sbjct: 271 DAHYLLYIADSLTTELKQ 288


>gi|219681356|ref|YP_002456120.1| putative exodeoxyribonuclease [Erwinia phage phiEa21-4]
 gi|327198485|ref|YP_004327073.1| putative exodeoxyribonuclease [Erwinia phage phiEa104]
 gi|199580623|gb|ACH89010.1| putative exodeoxyribonuclease [Erwinia phage phiEa21-4]
 gi|311875181|emb|CBX44441.1| putative exodeoxyribonuclease [Erwinia phage phiEa104]
          Length = 357

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 64/174 (36%), Gaps = 31/174 (17%)

Query: 79  DYKANRPKIPEMLLPQLPLVRLATQAFGIP----AIEIQGFEADDIIATYTYIAEKEGFA 134
            Y+ NR           P    AT+   I      +   GFEAD   A    + E++G  
Sbjct: 144 QYQGNRSGF-------TPTHLDATRQHLIDKSQMHLLSDGFEAD---AAVIAMGERKGKR 193

Query: 135 VTIISTDKDLMQLV---------SPTTCLYDTVKEEKIDIEHVI--------KKWGIPPE 177
             I+S DKDL QL+              +++TV     D+             K+     
Sbjct: 194 AVILSLDKDLRQLMGGYMLDMSYDKAPLIFNTVDNPLGDVWRCPIKSKPKQPPKYVGCGF 253

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
           K +C QAL GD  D   GI G+G      LL E   +   L     + +KK  E
Sbjct: 254 KWLCYQALAGDPSDGYYGISGVGGAAIIKLLDECETIHQCLDAIYALYKKKFPE 307


>gi|124505315|ref|XP_001351399.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
 gi|74876406|sp|Q7K734|FEN1_PLAF7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|11559508|gb|AAG37989.1|AF093702_1 flap endonuclease 1 [Plasmodium falciparum]
 gi|6562723|emb|CAB62862.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
          Length = 672

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 76/233 (32%), Gaps = 28/233 (12%)

Query: 77  YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII----ATYTYIAEKEG 132
             + K    +   +   Q    +      GIP IE                  +    E 
Sbjct: 122 LEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATED 181

Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKE--------EKIDIEHVIKKWGIPPEKMVCLQA 184
               +  T   +  L +  T   +  K          +I++E V+K   +  ++ +    
Sbjct: 182 ADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFCI 241

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L G   D    I GIG KTA  L++EY  +E I+ N  + K +       + A  + ++ 
Sbjct: 242 LCG--CDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARKSFINP 299

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISF------LKALEFTKLINRVATT 291
             V+ + D+ I          +     L  F         L  T  INR+   
Sbjct: 300 N-VLPKEDIKID-------WNEPQIEELKHFLIKDYNFNELRVTNYINRLLKA 344


>gi|73950874|ref|XP_535408.2| PREDICTED: similar to exosome component 10 isoform 1 [Canis
           familiaris]
          Length = 1012

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 98/315 (31%), Gaps = 42/315 (13%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 301 LHAKNIVRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 358

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L++ Q     P+       + 
Sbjct: 359 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPESVLQKPQPQLYRPVGETPCHFVS 418

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL T    +  +                          SF   T  + +S
Sbjct: 419 SLDELVELNEKLLTCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 458

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 459 TRT-EDFIVDTLELRSDMYILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 517

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + S     +  +++  +   +I     ++  +A ++++ +
Sbjct: 518 AARLLN--LGRHSLDHLLKLYCS-----VESNKQYQLADWRIRPLPEEMLNYARDDTHYL 570

Query: 550 LQLWLLLRPKLIVEK 564
           L ++  +R +L    
Sbjct: 571 LYIYDKMRLELWERG 585


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
          Length = 1450

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 105/332 (31%), Gaps = 42/332 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 418 EALNEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 475

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T E++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 476 LTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPVI 535

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-- 545
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 585

Query: 546 SNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 586 KEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 643

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL------ 657
           + +  +  +      E   + S    G+I    ++          ++    + +      
Sbjct: 644 ERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYA 703

Query: 658 ----EQINCGDNPIIKNILEWRQLSKIKSTYA 685
               +++   ++ + + I    ++ K      
Sbjct: 704 PLIEQELVKNEHDLEEIIQNLVEIGKSLDKIV 735


>gi|227824096|ref|YP_002828069.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234]
 gi|227343098|gb|ACP27316.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234]
          Length = 208

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 24/176 (13%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +    T  +     +   + +S  D   D                 + + G+       
Sbjct: 24  IAIDTETLGLVPRRDRLCVVQLSPGDGTADV---------------IRIAAGQKEAPN-- 66

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
              L +   +    KI H  ++D  VL H +G++        + S +  +    H +   
Sbjct: 67  ---LVRMLADPARQKIFHFGRFDIAVLFHTFGVTSTPVFCTKIASRLTRTYTDRHGLKDN 123

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            ++ L     +I K ++SS     I      E+A  +   +  L   L  +LI + 
Sbjct: 124 LKELLDV---DISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLIRDG 176


>gi|15679628|ref|NP_276745.1| flap endonuclease-1 [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|28380011|sp|O27670|FEN_METTH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|2622760|gb|AAB86106.1| DNA repair protein Rad2 [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 328

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 79/213 (37%), Gaps = 28/213 (13%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  GIP ++  G E +   +    +    G A  + S D D +   +P      T+
Sbjct: 136 KRLLELLGIPYVQAPG-EGEAQASYMVKM----GDAWAVASQDYDCLLFGAPRVVRNLTL 190

Query: 159 KE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
                  E I++E  +++  I   ++V +  L G   D   G+ GIG +    L++E G+
Sbjct: 191 SGKLEDPEIIELESTLRELSISHTQLVDMALLVG--TDFNEGVKGIGARRGLKLIREKGD 248

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
           +  ++ +         +               L  +  +  ++   E +     +   +I
Sbjct: 249 IFKVIRDLEADIGGDPQ--------------VLRRIFLEPEVSEDYE-IRWRKPDVEGVI 293

Query: 274 SFL-KALEFTKLINRVATTYDCDAANIEPVVLD 305
            FL     F++   R A      A++ +  + D
Sbjct: 294 EFLCTEHGFSEDRVRAALKKFEGASSTQKSLED 326


>gi|328715848|ref|XP_001946726.2| PREDICTED: hypothetical protein LOC100169397 [Acyrthosiphon pisum]
          Length = 951

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 26/185 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           ++   + FGIP I     EA+   A    I   EG     ++ D D+  L        D 
Sbjct: 667 IKGLLKLFGIPYITAP-MEAEAQCAFLEKIGRTEGT----VTDDSDVW-LFGANVVYKDF 720

Query: 158 VKEEKIDIE----HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
              +K   +     + +++ +     + L  L G   D   GI GIG  +A  +L  + +
Sbjct: 721 FDNQKYVKQFKSIDIKQQFALSRNSFIQLAFLVG--SDYTNGIDGIGPVSAIEILSFFES 778

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED--CNGPR 271
                    + K     E +L+  E A  S+    +  D+P    L+   + +   N   
Sbjct: 779 ---------KTKNMNIEEKLLKIKEIAN-SK--AEVYCDIPFMKKLKSTKIGNDFPNKAV 826

Query: 272 LISFL 276
           + ++L
Sbjct: 827 INAYL 831


>gi|313230839|emb|CBY08237.1| unnamed protein product [Oikopleura dioica]
          Length = 866

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 97/364 (26%), Gaps = 77/364 (21%)

Query: 630 GDILFTKLKFPSGAKTKTGQW-------KTTAQDLEQINCGDNP----IIKNILEWRQLS 678
             + F   +       K GQ        K +   +             IIK+I+E     
Sbjct: 429 AHVNFESDELTPLPHDKAGQKVGMLMTSKYSKNIIAGHLATKYEFGKNIIKDIMEVNTRG 488

Query: 679 KIKSTYADSLPNHI----NKRTQRVHTFYSLASTMTGRL--ASLEPNLQNIPIKTDLGQK 732
                Y +   N +                   T+T R   +       N      LG  
Sbjct: 489 SYWRAYRERFKNLLIIKDEDHYNWHLPMQVPHGTVTRRAKDSFWMVAQANDSNDDKLGMG 548

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKIT-PLYQVF-------------ENSLDIH 778
                        +SAD    E+ I +  A +   L +V                  DIH
Sbjct: 549 AFSLAQLDEDHVYVSADVDSQEIWIASLFADMYKNLGEVGVTGLSYMTLNGSKSAGTDIH 608

Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838
            + A ++            R  AK +N++ +Y +   + A  L  PR  A   +   +  
Sbjct: 609 TITANQV---------GMDRNSAKILNYARLY-LCGKQNALDLLGPRDGAGKIVDELWRF 658

Query: 839 FPGIHEYIEKTKNF--------------------------------VRQNGYVETIFGRR 866
             G    +    +                                   ++     + G  
Sbjct: 659 TKGKSVLVRNPVSETGKKILSDGVNASHSLAEDGIESELFNYLMLTAAEDQPTTPVLGGN 718

Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926
           +    +N     +   +     N  IQ SA D     + ++   +E + +     L IHD
Sbjct: 719 LLMPLLN----QLAPSHTTTRCNWLIQSSAVDFLHLFLANMDFLVEKYGINAHYSLSIHD 774

Query: 927 ELVF 930
            + F
Sbjct: 775 MIQF 778


>gi|125999984|ref|YP_001039655.1| 5'-3' exonuclease-like protein [Erwinia amylovora phage Era103]
 gi|121621840|gb|ABM63414.1| 5'-3' exonuclease-like protein [Enterobacteria phage Era103]
          Length = 379

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 77/223 (34%), Gaps = 47/223 (21%)

Query: 44  MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIY--PDYKANRPKIPEMLLPQLPLVRLA 101
           ML +++ ++  +S   +        A  FR  +     YK  RP           L R  
Sbjct: 86  MLNRMIGSADCDSARIYMT----NSAANFRLNLAFTHPYKGTRPASKPAFFQ--ELRRYL 139

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYI-----AEKEGFAV-----------TIISTDKDLM 145
            +      I   G EADD I+   +       E+EG  V            +IS DKDLM
Sbjct: 140 LETQD--TILAVGEEADDRISIEAWRMAREFCEEEGIEVGSEEHKAFADYVVISKDKDLM 197

Query: 146 QLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM----------------VCLQALTGDS 189
           Q+       +   K   +++E V  K+G    K                 +  Q L GD 
Sbjct: 198 QVPG----WHLHYKNNAMELEWVT-KFGYLRPKYKGDGKMKKLEGAGLKFLYAQMLMGDD 252

Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232
           +DN  G+PG G       LQ       +      + +KK  + 
Sbjct: 253 VDNYKGLPGCGMVKVFDTLQPCKTEAELYFATLALYKKKYGDK 295


>gi|326477901|gb|EGE01911.1| exosome complex exonuclease Rrp6 [Trichophyton equinum CBS 127.97]
          Length = 824

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 85/255 (33%), Gaps = 33/255 (12%)

Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKIN-------SEQTPQKLFLERLQKLSQYPINNDSY 368
           ++++      ++ S   S+ D T   N          T      E+ +     P+ +   
Sbjct: 184 LKSKPHALVGLEESLGGSIEDPTKPYNHPYEKEIEASTYPARVYEKAEPTMYTPVADSKA 243

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +   +D+   + +L+     +  +                       D   +      
Sbjct: 244 IFVETLEDVHAMLSQLKQAEEIAVDLE--------------------HHDSHVYHGLVCL 283

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
           + +S              ++ L  L + F +   +K+ H    D + L R  G+ + G  
Sbjct: 284 MQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGLYLVGLF 343

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D    +  L        +  +  +++ +   +  K  +++    +   + + ++A  +++
Sbjct: 344 DTFHAASALQ--LPKKSLKFLLHEYVGF---DADKQYQTADWRIRPLLAGMLDYARSDTH 398

Query: 548 VILQLWLLLRPKLIV 562
            +L ++  LR +L+ 
Sbjct: 399 FLLYIFDRLRNQLLD 413


>gi|301117906|ref|XP_002906681.1| flap endonuclease 1 [Phytophthora infestans T30-4]
 gi|317374909|sp|D0MY34|FEN1_PHYIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|262108030|gb|EEY66082.1| flap endonuclease 1 [Phytophthora infestans T30-4]
          Length = 389

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 89/295 (30%), Gaps = 61/295 (20%)

Query: 28  RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87
              DG   + + G   M  + ++         +   +FD      ++         R + 
Sbjct: 60  TNADGEVTSHLQG---MFSRTIRMMENGLKPVY---VFDGKPPVMKSGELAKRSDRRQEA 113

Query: 88  PEMLLPQLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATY 124
            + L                              +   +  G+P I     EA+   A  
Sbjct: 114 QKALEEATEKGNAEDIDRFNKRLVRATPQHNEDCKELLRLMGVPHITAPC-EAEASCAAL 172

Query: 125 TYIAEKEGFAVTII-STDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPE 177
                  G  V    + D D +    P      TV   K      I +E  +++  +  E
Sbjct: 173 AK-----GGRVYAAGTEDMDALTFGVPVLYRRLTVSPAKKIPILEIRLERALQELEMTHE 227

Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-------KRR 230
           + V L  L G   D    I G+G K A   ++E+ ++EN L    + K K          
Sbjct: 228 QFVDLCILCG--CDYCDSIRGVGPKKAYAGIKEHKSIENFLEVLQKNKSKGVVIPDEWLG 285

Query: 231 EN-ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL-KALEFTK 283
           EN I + A    +  ++V              +   D     L+ FL K   F +
Sbjct: 286 ENPIYKNAREMFIKPEVV--------DAKETEIKWRDPQETELVDFLVKKHGFQE 332


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
          Length = 1450

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 105/332 (31%), Gaps = 42/332 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 418 EALNEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 475

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T E++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 476 LTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPVI 535

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-- 545
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 585

Query: 546 SNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 586 KEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 643

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL------ 657
           + +  +  +      E   + S    G+I    ++          ++    + +      
Sbjct: 644 ERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYA 703

Query: 658 ----EQINCGDNPIIKNILEWRQLSKIKSTYA 685
               +++   ++ + + I    ++ K      
Sbjct: 704 PLIEQELVKNEHDLEEIIQNLVEIGKSLDKIV 735


>gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
 gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
          Length = 381

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 97/266 (36%), Gaps = 43/266 (16%)

Query: 371 IVNTKDIQQWVQKL--ETIGSASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           I +T D+ ++  +L  +   S +       + + ++ K   + I+  +++          
Sbjct: 3   ICSTNDLSRFCTELLRDNPESVAIDTEFLRSFNDYYPKLCLLQIAYENKQCVI------- 55

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGF 486
                     D+  +       L+ L++ F+N    K+ H+ + D   L     S+ R  
Sbjct: 56  ----------DALAEGID----LTPLQEIFDNTQIFKVFHDCRQDLDALSLLFESLPRPI 101

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS------DSQVQE 540
            D  + + + +   +S   + + +++L            + +P  ++             
Sbjct: 102 FDTQIAAMLCEYHENSVGYSKLVEQFLGVKL--------NKMPFKRVDWSKRPLTESEVR 153

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL---LKQ 597
           +A+++   + +L+ +LR  L  +  L  Y   +   I        T I    +    L +
Sbjct: 154 YALDDVIYLYKLYGILRDILTSKGRLSWYME-EMDCIVDSVSDNYTTILESMECYADLTE 212

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNL 623
             A I+++++   E +  L     N+
Sbjct: 213 QEANIARSVVEWRERVARLLNINRNI 238


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 105/332 (31%), Gaps = 42/332 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 418 EALNEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 475

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T E++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 476 LTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPVI 535

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-- 545
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 585

Query: 546 SNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 586 KEAMDNHHMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 643

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL------ 657
           + +  +  +      E   + S    G+I    ++          ++    + +      
Sbjct: 644 ERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYA 703

Query: 658 ----EQINCGDNPIIKNILEWRQLSKIKSTYA 685
               +++   ++ + + I    ++ K      
Sbjct: 704 PLIEQELVKNEHDLEEIIQNLVEIGKSLDKIV 735


>gi|170119612|ref|XP_001890929.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|317374866|sp|B0E412|FEN12_LACBS RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
           Full=Flap structure-specific endonuclease 1-B
 gi|164633979|gb|EDQ98419.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 469

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 20/138 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII------STDKDLMQLVSPT 151
            +   +  GIP +     EA+   A         G  V I       S D D +   +P 
Sbjct: 140 CQRLLRLMGIPVVIAPS-EAEAQCAELAR-----GGKVYIALYYAAGSEDMDTLTFNAPI 193

Query: 152 TCLYDTVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
              + T  E       +I+++  ++         + L  L G   D +  I G+G K+A 
Sbjct: 194 LFRHLTFSEAKKQPISEINLKEALEGPLYSFPTFIDLCILLG--CDYLEPIKGVGPKSAL 251

Query: 206 LLLQEYGNLENILINASR 223
            L++EYG L+ ++ +   
Sbjct: 252 KLIREYGGLKGVVKHLRE 269


>gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 555

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 72/246 (29%), Gaps = 23/246 (9%)

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           R +  +  D + I+     +   +   +     I R  + +T   S+            +
Sbjct: 115 RFSPAHSVDTSIIDFANEALTAMQADDLESLRRIARAVSHQTDSRSAFGGVGGTGARGNS 174

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL------ETIGSASFKIITD--- 397
                 E  Q  S     +DS     N       +Q              +F + T    
Sbjct: 175 TASPSAEGNQAKSSEKKQDDSPAAPDNDAQRSNVLQPADGTLDSRPPSFIAFDVETANEA 234

Query: 398 -------TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
                   +  +H    A + + L Q   +++   T         + D         + L
Sbjct: 235 NGSICQFGVVVYHEGKEAESHTWLCQP-PSAWPDFTPATTAIHGITPDKVANEPSCHDRL 293

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIMLMSYVLDSGRSSHD 504
             L      E+   + HN K+D + L       +  I    F    L++  L     ++ 
Sbjct: 294 EQLAALLRKENLPIVAHNAKFDMVALRDAARAEKVDIPHITFACTYLLARALHPELPNYK 353

Query: 505 IASIAQ 510
           + ++AQ
Sbjct: 354 LTTVAQ 359


>gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213019628|ref|ZP_03335434.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357377|emb|CAQ54811.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995050|gb|EEB55692.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 206

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 53/137 (38%), Gaps = 5/137 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L+K  E+++  KI H  ++D  ++H Y            + S ++ +   +H +  +  +
Sbjct: 64  LRKILEDKNITKIFHFARFDVSIIHYYLQTWALPCYCTKIASRLVRTYTDNHSLKELCLE 123

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            L      + K ++SS   ++    + + +A  +   + ++   L   L  E    + E+
Sbjct: 124 LLDIK---LNKQQQSSDWGNENLTDKQKSYAASDVLYLHKIKEKLDLMLERENRKELAEK 180

Query: 572 L-DKPMIDVVSQMEITG 587
             +     +       G
Sbjct: 181 CFEFLPTRIELDSMGWG 197


>gi|259146759|emb|CAY80016.1| Rad2p [Saccharomyces cerevisiae EC1118]
          Length = 1031

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 26/202 (12%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R    E+ +  +  V+     FGIP I     EA+   A    +   +G    II+ 
Sbjct: 759 KDKRDS-DEVTMDMIKEVQELLSRFGIPYITAP-MEAEAQCAELLQLNLVDG----IITD 812

Query: 141 DKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           D D+   +   T +Y  +  EK      D E ++K  G+  + M+ L  L G   D   G
Sbjct: 813 DSDVF--LFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLG--SDYTNG 868

Query: 196 IPGIGYKTAALLLQEYGNL---ENILINASRIKQKKRRENILEYAETARLSRKLV----M 248
           + G+G  ++  ++ E+GNL   ++   N    K+K+  EN  E  +   L +KLV    +
Sbjct: 869 LKGMGPVSSIEVIAEFGNLKDFKDWYNNGQFDKRKQETENKFE-KD---LRKKLVNNEII 924

Query: 249 LRTDVPITIPLEHLILEDCNGP 270
           L  D P  +  +  +  + +  
Sbjct: 925 LDDDFPSVMVYDAYMRPEVDHD 946


>gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10]
          Length = 1436

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           E      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 415 EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIERFDKFINPHHPLSEQTINLTSIT 474

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +          ++   + F+ +      GHN+++D       L R G+S   +   D +
Sbjct: 475 DEMVSAADDEDVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTL 532

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 533 EVSRLLHPEQNRHTLDSLAKKY 554


>gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
 gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
          Length = 1436

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           E      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 415 EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIERFDKFINPHHPLSEQTINLTSIT 474

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +          ++   + F+ +      GHN+++D       L R G+S   +   D +
Sbjct: 475 DEMVSAADDEDVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTL 532

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 533 EVSRLLHPEQNRHTLDSLAKKY 554


>gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 1438

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           E      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 417 EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIERFDKFINPHHPLSEQTINLTSIT 476

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +          ++   + F+ +      GHN+++D       L R G+S   +   D +
Sbjct: 477 DEMVSAADDEDVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTL 534

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 535 EVSRLLHPEQNRHTLDSLAKKY 556


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 105/332 (31%), Gaps = 42/332 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 418 EALSEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 475

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T E++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 476 LTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVI 535

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-S 546
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 585

Query: 547 NVILQLWLLLR-PKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 586 KEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 643

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL------ 657
           + +  +  +      E   + S    G+I    ++          ++    + +      
Sbjct: 644 ERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYA 703

Query: 658 ----EQINCGDNPIIKNILEWRQLSKIKSTYA 685
               +++   ++ + + I    ++ K      
Sbjct: 704 PLIEQELVKNEHDLEEIIQNLVEIGKSLDKIV 735


>gi|260582345|ref|ZP_05850138.1| ribonuclease D [Haemophilus influenzae NT127]
 gi|260094713|gb|EEW78608.1| ribonuclease D [Haemophilus influenzae NT127]
          Length = 380

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +V T F  L +    D    + +    ++    F     N   LKI H+   D L
Sbjct: 36  DTEFMRVSTYFPKLGLIQLYDGKHVSLIDPLAITDFSPFVALLANPKVLKILHSCSEDLL 95

Query: 475 V-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V L  +    R   D  +M+  L  G S+  +A +AQ++L+    EI K    +  I + 
Sbjct: 96  VFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNI---EIDKGATRTNWIKRP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                 ++A  +   +L L+ +L  +L  
Sbjct: 152 LSDIQLQYAAGDVWYLLPLYHILEKELAK 180


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
          Length = 1450

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 105/332 (31%), Gaps = 42/332 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 418 EALSEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 475

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T E++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 476 LTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVI 535

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-S 546
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 585

Query: 547 NVILQLWLLLR-PKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 586 KEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 643

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL------ 657
           + +  +  +      E   + S    G+I    ++          ++    + +      
Sbjct: 644 ERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYA 703

Query: 658 ----EQINCGDNPIIKNILEWRQLSKIKSTYA 685
               +++   ++ + + I    ++ K      
Sbjct: 704 PLIEQELVKNEHDLEEIIQNLVEIGKSLDKIV 735


>gi|168010031|ref|XP_001757708.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690984|gb|EDQ77348.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 294

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 29/187 (15%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           +     +P+ I      +  D +       + L+   +            ++   K   E
Sbjct: 4   LQPRPDQPLVIGF--DCEGVDLARYGRLCIMQLAFDDAVYLVDAVMGGNSLMQACKLGLE 61

Query: 459 NEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLD--------SGRSSHDIASIA 509
           + + +K+ H+ K D   L+ +YGI +    D  +   +L                +  +A
Sbjct: 62  SPYVIKVCHDCKRDSEALYFQYGIKLNNVFDTQIAYTLLKEQHGKKWVPDDYISFVDLLA 121

Query: 510 -QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---L 565
            +++      E     K  + +    D Q   H         + W ++  ++  +    L
Sbjct: 122 DERYCGMIYDE-----KEEVRVLLRKDPQFWAH---------RPWTVMMKRVAADDVRFL 167

Query: 566 LHVYERL 572
           L +YER+
Sbjct: 168 LRIYERM 174


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 105/332 (31%), Gaps = 42/332 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 418 EALSEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 475

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T E++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 476 LTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVI 535

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-S 546
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 585

Query: 547 NVILQLWLLLR-PKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 586 KEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 643

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL------ 657
           + +  +  +      E   + S    G+I    ++          ++    + +      
Sbjct: 644 ERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYA 703

Query: 658 ----EQINCGDNPIIKNILEWRQLSKIKSTYA 685
               +++   ++ + + I    ++ K      
Sbjct: 704 PLIEQELVKNEHDLEEIIQNLVEIGKSLDKIV 735


>gi|302381884|ref|YP_003817707.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
 gi|302192512|gb|ADL00084.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
          Length = 204

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 7/137 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK+   +   LKI H  ++D  +V    G+         + S +  +    H +  +A++
Sbjct: 63  LKRLMADRDVLKIFHFGRFDIAMVELHLGVETGPVYCTKIASKLARTYTDRHGLKDVARE 122

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
                    L   + S        SQ Q ++A  +   +  +   L   L+ E  + + +
Sbjct: 123 MAGID----LSKAQQSSDWGAAELSQAQLDYAASDVLHLHVIMRRLNEMLVREGRMELAQ 178

Query: 571 RLDKPMIDVVSQMEITG 587
                 + V +++++ G
Sbjct: 179 AC-FDFLPVRARLDLRG 194


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 105/332 (31%), Gaps = 42/332 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 418 EALSEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 475

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T E++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 476 LTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVI 535

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-S 546
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 585

Query: 547 NVILQLWLLLR-PKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 586 KEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 643

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL------ 657
           + +  +  +      E   + S    G+I    ++          ++    + +      
Sbjct: 644 ERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYA 703

Query: 658 ----EQINCGDNPIIKNILEWRQLSKIKSTYA 685
               +++   ++ + + I    ++ K      
Sbjct: 704 PLIEQELVKNEHDLEEIIQNLVEIGKSLDKIV 735


>gi|332716830|ref|YP_004444296.1| Ribonuclease D [Agrobacterium sp. H13-3]
 gi|325063515|gb|ADY67205.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 208

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
                +G+ +    T  +     +   + +S  D   D                 + + G
Sbjct: 16  DAARYLGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADV---------------IRIAAG 60

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGR 500
           +          L     +    KI H  ++D  VL H +G++        + S +  +  
Sbjct: 61  QKEAPN-----LTHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLTRTYT 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
             H +    ++ L     +I K+++SS    +       E+A  +   +  L   L  +L
Sbjct: 116 DRHGLKDNLKEMLEV---DISKAQQSSDWAAEKLSPAQLEYAASDVLHLHALRDKLTHRL 172

Query: 561 IVEKLLH 567
           + +  L 
Sbjct: 173 VRDGRLD 179


>gi|115767336|ref|XP_001198019.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus
           purpuratus]
 gi|115963545|ref|XP_001176068.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus
           purpuratus]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSH-----D 504
           S LKK  E+   LK+ H+ K D   LH  +G+ ++   D  +    +    + +      
Sbjct: 76  SSLKKILEHNSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVG 135

Query: 505 IASIAQ---KWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENS-NVILQLWLLLRP 558
             ++ +   +  ++   + +K    +    KI     ++  +A  ++  +I  ++L    
Sbjct: 136 FKALCELLGEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNG 195

Query: 559 KL 560
            L
Sbjct: 196 ML 197


>gi|68062082|ref|XP_673044.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56490604|emb|CAI01886.1| hypothetical protein PB300433.00.0 [Plasmodium berghei]
          Length = 375

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 74/220 (33%), Gaps = 23/220 (10%)

Query: 77  YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII---------ATYTYI 127
             + K    +   +   Q    +      GIP IE                   AT T  
Sbjct: 122 LEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATATED 181

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQA 184
           A+   F   I+  + +     +       + +     +I++E V+K   +  ++ +    
Sbjct: 182 ADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDFCI 241

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244
           L G   D    I GIG KTA  L++EY  +ENI+ N  + K +         A  + +  
Sbjct: 242 LCG--CDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQSFIKP 299

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFL-KALEFTK 283
           K+        +      +   +     L  FL K   F +
Sbjct: 300 KV--------LEKSEVKIDWCEPKIEELKKFLIKEHNFNE 331


>gi|115661808|ref|XP_001202523.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
 gi|115689950|ref|XP_001201160.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
          Length = 234

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSH-----D 504
           S LKK  E+   LK+ H+ K D   LH  +G+ ++   D  +    +    + +      
Sbjct: 82  SSLKKILEHNSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVG 141

Query: 505 IASIAQ---KWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENS-NVILQLWLLLRP 558
             ++ +   +  ++   + +K    +    KI     ++  +A  ++  +I  ++L    
Sbjct: 142 FKALCELLGEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNG 201

Query: 559 KL 560
            L
Sbjct: 202 ML 203


>gi|120599067|ref|YP_963641.1| ribonuclease D [Shewanella sp. W3-18-1]
 gi|120559160|gb|ABM25087.1| ribonuclease D [Shewanella sp. W3-18-1]
          Length = 367

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 61/206 (29%), Gaps = 28/206 (13%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           +  + +   +   V + +                +++K   I             K   +
Sbjct: 2   FHYVSDEVSLNALVAQYQQSKILVLDTEFVRTRTYYAKLGLI--------QAYDGKTLAL 53

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGF 486
              +++                L+       N + +K+ H+   D  V   YG       
Sbjct: 54  IDPVALPD--------------LAKFWALLANPNIIKLVHSCSEDLEVFAHYGQCQPVPL 99

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  + + +   G      A + +  L    + I K    +  I +        +A  + 
Sbjct: 100 FDSQIAASLCGMGHGV-GYAKLVETCLG---EVIDKGESRTDWIRRPLTEAQLAYAANDV 155

Query: 547 NVILQLWLLLRPKLIVEK-LLHVYER 571
             + QL+  L  KL+ +  L  +YE 
Sbjct: 156 LYLHQLYPQLEAKLVAQGRLNWLYEE 181


>gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
 gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL
           1118]
          Length = 1435

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           E      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 414 EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSIT 473

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +          ++   + F+ +      GHN+++D       L R G+S   +   D +
Sbjct: 474 DEMVSAADDEDVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTL 531

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 532 EVSRLLHPEQNRHTLDSLAKKY 553


>gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 1435

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------S 436
           E      F + T  + + +   I I    +   +  +   K       LS  T      +
Sbjct: 414 EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSIT 473

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +          ++   + F+ +      GHN+++D       L R G+S   +   D +
Sbjct: 474 DEMVSAADDEDVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTL 531

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 532 EVSRLLHPEQNRHTLDSLAKKY 553


>gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500]
          Length = 1011

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 94/252 (37%), Gaps = 44/252 (17%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           ++  +YT +     +    +KL  +   +  +                       +  SF
Sbjct: 269 LDETAYTWVDRVDQLAALTEKLNQVEEFAVDLEA--------------------HNYRSF 308

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGI 481
           +     + +S  T +D      + +  +  L   F N   +K+ H  + D   L R +GI
Sbjct: 309 QGFVCLMQVSTRT-EDFIVDTLVLRSHMKMLNVPFTNPKIVKVLHGSESDVKWLQRDFGI 367

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +    D    S +L+     +  AS+A     Y   +  K  + +    +    ++ ++
Sbjct: 368 YIVNMFDTGQASRILE-----YPSASLAFLLRFYCGVDANKKFQLADWRIRPVPEEMIKY 422

Query: 542 AIENSNVILQLWLLLRPKLIVEK------LLHVYER--------LDKPMIDVVSQ---ME 584
           A E+++ +L ++  LR +L+++       L+ V  R         +K ++D  S    ++
Sbjct: 423 AREDTHYLLYIYDRLRNELVLKGKSTNNYLMEVLRRSKEICLIKYEKDILDENSHAEYLK 482

Query: 585 ITGIQIDQDLLK 596
             GI  +   LK
Sbjct: 483 KNGITYNPAQLK 494


>gi|329122266|ref|ZP_08250854.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
 gi|327473827|gb|EGF19244.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
          Length = 399

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +V T F  L +    D    + +    ++    F     N   LKI H+   D L
Sbjct: 55  DTEFMRVSTYFPKLGLIQLYDGERVSLIDPLAITDFSPFVALLSNPKVLKILHSCSEDLL 114

Query: 475 V-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V L  +    R   D  +M+  L  G S+  +A +AQ++L+    EI K    +  I + 
Sbjct: 115 VFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNI---EIDKGATRTNWIKRP 170

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                 ++A  +   +L L+ +L  +L  
Sbjct: 171 LSDIQLQYAAGDVWYLLPLYHILEKELAK 199


>gi|302927330|ref|XP_003054474.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
            77-13-4]
 gi|256735415|gb|EEU48761.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
            77-13-4]
          Length = 1192

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 98/294 (33%), Gaps = 41/294 (13%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FGIP I     EA+   A    +   +G    I++ 
Sbjct: 854  KKDRRDADEVTQVMITECQALLRLFGIPYITAP-MEAEAQCAELVQLGLVDG----IVTD 908

Query: 141  DKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
            D D    +   T +Y  +      +E      + K+  +  E+++ L  L G   D   G
Sbjct: 909  DSDTF--LFGGTRVYKNMFNSNKFVECYLGGDLEKELSLSREQLISLAQLLG--SDYTEG 964

Query: 196  IPGIGYKTAALLLQEYG---NLENILINASRIKQKKR----------RENILEYA-ETAR 241
            +PG+G  TA  +L E+     LE+       ++ + R          R+           
Sbjct: 965  LPGVGPVTAVEILSEFPGKSGLEDFRDWWKEVQSQSRPKEADASSPFRKKFRRSQGTKLF 1024

Query: 242  L-----SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
            L     S  +     +  +    E       +   L  F        L+  +  + +   
Sbjct: 1025 LPPGFPSPAVFDAYLNPEVDDSNESFQWGVPDVEGLRQF--------LMATIGWSKERTD 1076

Query: 297  ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
              + PV+ D+N  + +G           ++      + + +     S++    +
Sbjct: 1077 EVLVPVIKDMNKRDREGTQSNITRFFGGSVGAGAKEAFAPRQKAQGSKRMAAAV 1130


>gi|146292862|ref|YP_001183286.1| ribonuclease D [Shewanella putrefaciens CN-32]
 gi|145564552|gb|ABP75487.1| ribonuclease D [Shewanella putrefaciens CN-32]
          Length = 367

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 61/206 (29%), Gaps = 28/206 (13%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           +  + +   +   V + +                +++K   I             K   +
Sbjct: 2   FHYVSDEVSLNALVAQYQQSKILVLDTEFVRTRTYYAKLGLI--------QAYDGKTLAL 53

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGF 486
              +++                L+       N + +K+ H+   D  V   YG       
Sbjct: 54  IDPVALPD--------------LAKFWALLANPNIIKLVHSCSEDLEVFAHYGQCQPVPL 99

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  + + +   G      A + +  L    + I K    +  I +        +A  + 
Sbjct: 100 FDSQIAASLCGMGHGV-GYAKLVETCLG---EVIDKGESRTDWIRRPLTEAQLAYAANDV 155

Query: 547 NVILQLWLLLRPKLIVEK-LLHVYER 571
             + QL+  L  KL+ +  L  +YE 
Sbjct: 156 LYLHQLYPQLEAKLVAQGRLNWLYEE 181


>gi|71083204|ref|YP_265923.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062317|gb|AAZ21320.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062]
          Length = 203

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L K   +   +KI H  + D   + H          D  + S +  S   SH + ++ ++
Sbjct: 65  LNKVLSDASIIKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTLIKE 124

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
           +++    ++ K  +SS    ++S +Q+ ++   +   + ++   L   L+ EK + +Y+
Sbjct: 125 FMNV---DVSKQFQSSDFGGELSPAQL-KYCANDVIYLHKIHEELNKILVREKRIDLYK 179


>gi|308473314|ref|XP_003098882.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
 gi|308268021|gb|EFP11974.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
          Length = 860

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 85/237 (35%), Gaps = 34/237 (14%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           +  LE  +      + N   T +   + ++     L ++   S  +    M  +      
Sbjct: 249 ESQLESAEPKKFNALKNTQLTMVDTKEKLEALKDTLNSVTEFSVDLEHHEMRTYLGLTCL 308

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           I IST D                     +D         + +  L + F N   LK+ H 
Sbjct: 309 IQISTRD---------------------EDFIIDPFPMWDCIGILNEPFTNPKILKVFHG 347

Query: 469 IKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
              D L L R +GI +    D  +        +  +   S+A  +L++   +++  ++  
Sbjct: 348 ADNDVLWLQRDFGIHIVNLFDTYVAM-----KKLKYPKFSLA--YLAFRFADVILDKQYQ 400

Query: 528 IPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDV 579
           +     +   + +  +A E+++ +L  + +LR +L+ +    L  VY   +   + V
Sbjct: 401 LADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQDKKDLNVVYSECNDLCVRV 457


>gi|189194651|ref|XP_001933664.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979228|gb|EDU45854.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 786

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 72/210 (34%), Gaps = 26/210 (12%)

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            E  +     P ++ + T +   + +   + +L+T    +  +                 
Sbjct: 189 YETAEPQQYAPFDSTTATLVDTPEALAAMLAELKTAKEIAIDLE---------------- 232

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                 D+ ++      + +S              +  L  L + F +   LK+ H    
Sbjct: 233 ----HHDNRTYIGMVCLMQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAFM 288

Query: 472 DKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
           D + L R  G+ + G  D    +  L      +  AS+A     +   +  K  + +   
Sbjct: 289 DIVWLQRDLGLYIVGLFDTFHAARAL-----GYQAASLAYLLELHVNFKAQKQYQLADWR 343

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +    ++ E+A  +++ +L ++  +R +L
Sbjct: 344 QRPLSKELFEYARADTHFLLYIFDNMRNEL 373


>gi|255934162|ref|XP_002558362.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582981|emb|CAP81189.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 756

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 81/228 (35%), Gaps = 29/228 (12%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P  + + T +     ++Q +++L+     +  +                       D  S
Sbjct: 216 PFESTTATFVDTLDGVRQMLKELKQAKEIAIDLE--------------------HHDVHS 255

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
           +      + +S              +E L  L + F +   LK+ H    D + L R  G
Sbjct: 256 YHGLVSLMQISTRDKDWVVDTLQPWREDLQMLNEVFADPKILKVLHGSTMDIIWLQRDLG 315

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
           + + G  D    +  L  G     +  +  K++++   E  K  +++    +     + +
Sbjct: 316 LYVVGMFDTFHAASAL--GFPKRSLKFLLSKFVNF---EADKRYQTADWRARPLPPAMFD 370

Query: 541 HAIENSNVILQLWLLLRPKLIV---EKLLHVYERLDKPMIDVVSQMEI 585
           +A  +++ +L ++  LR  LI    E   H+    ++   + + + E 
Sbjct: 371 YARSDTHYLLYIYDRLRNDLIDNSTEDASHIDYVNERSKHEALQRYER 418


>gi|145252306|ref|XP_001397666.1| exosome complex exonuclease Rrp6 [Aspergillus niger CBS 513.88]
 gi|134083214|emb|CAK42852.1| unnamed protein product [Aspergillus niger]
          Length = 782

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 78/207 (37%), Gaps = 28/207 (13%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P  +   T +   + +++ +++L+     +  +                       D  
Sbjct: 221 QPWESTKATFVDTLEGVKEMLEELKAAKEIAIDLE--------------------HHDVH 260

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
           S++     + +S              +E L  L + F + + LK+ H    D + L R  
Sbjct: 261 SYQGLVSLMQISTRDKDWVVDTLKPWREELQVLNEVFTDPNILKVLHGSSMDIIWLQRDL 320

Query: 480 GISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G+ + G  D    +  L+   RS   +  + QK++++   E  K  + +    +     +
Sbjct: 321 GLYVVGMFDTYHAACALNYPKRS---LKFLLQKFVNF---EADKRYQMADWRIRPIPEGM 374

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL 565
            ++A  +++ +L ++  +R +L+   L
Sbjct: 375 FDYARSDTHYLLHIYDHIRNELVENSL 401


>gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2]
          Length = 380

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 66/218 (30%), Gaps = 31/218 (14%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH--SKPIAIAISTL 414
              +  +       I +   + Q  ++  T    +       +D F+  +  + +     
Sbjct: 1   MTKEMFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVG---- 56

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                                 +     + L  +  S   +  E+E  +K+ H    D  
Sbjct: 57  --------------------DGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHACSEDLE 96

Query: 475 VLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V  R  G       D  L +  L     S   + + ++ L     ++ K    S  + + 
Sbjct: 97  VFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDI---DLPKDETRSDWLQRP 152

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
                  +A ++   + Q++L L  +L  EK   + E 
Sbjct: 153 LTEMQMRYAADDVQHLAQVYLALDTRLSEEKRAWLLED 190


>gi|302415657|ref|XP_003005660.1| 3'-5' exonuclease domain-containing protein [Verticillium
           albo-atrum VaMs.102]
 gi|261355076|gb|EEY17504.1| 3'-5' exonuclease domain-containing protein [Verticillium
           albo-atrum VaMs.102]
          Length = 894

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 110/339 (32%), Gaps = 25/339 (7%)

Query: 242 LSRKLVMLRTDVPITIP---LEHLILEDCNGPRLISFLKAL---------EFTKLINRVA 289
           LS KL+    +V        LE     D +  +++  L  +         EFT ++ R  
Sbjct: 107 LSHKLLKSAAEVCGQGSVPELEDADDVDMHWRKIVDVLDNVLEKADRSIDEFTGVLKRKD 166

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS--DQTSKINSEQTP 347
              +      +P     +   N  +A            TS    LS     S    E   
Sbjct: 167 APTETTPNAKKPRTALASNMRNANMAKPQLEFERAIDNTSWKPVLSKKPNASVPLEESLA 226

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           +       +   +  I   +Y + V  K        +++  +         ++       
Sbjct: 227 RDSADSGSKHPYETEILAANYPEQVYQKAEPILYHPVKSTTAKWVDTYEGVLEMLGELKK 286

Query: 408 AIAIST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           A  I+  L+  D  ++      + +S              +  L  L + F N   +K+ 
Sbjct: 287 AKEIAVDLEHHDTRTYAGLLSLMQISTRDQDWIVDTLKPWRHQLEVLNEVFTNPKIVKVF 346

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D   L R  G+ + G  D    + +L      +   S+A  +L     +    +K
Sbjct: 347 HGAHMDMQWLQRDLGLYINGLFDTFFAAEIL-----GYPQRSLA--YLLKRFVDFDADKK 399

Query: 526 SSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +   +I     ++  +A  +++ +L ++  +R +L+ 
Sbjct: 400 YQMADWRIRPLPEEMFYYARSDTHYLLYIFDRIRNELLD 438


>gi|330835718|ref|YP_004410446.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
 gi|329567857|gb|AEB95962.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
          Length = 301

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIAT----YTYIAEKEGFAVTIISTDKDLMQLVS----- 149
           +      GIP ++       +          Y A  + +   +    + +  L       
Sbjct: 89  KRLLSLMGIPTVQAPSEGEAEAAYMNSQGLVYAAASQDYDSLLFGATRLIRNLTISGKRK 148

Query: 150 -PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALL 207
            P    Y  VK E I+ + ++KK GI  ++++ +  L G   D  P GI GIG K A  L
Sbjct: 149 LPNKDAYVEVKPEVIEADLLLKKLGITRDELIDIAILIG--TDYNPDGIKGIGPKRAYKL 206

Query: 208 LQEYGNLENI 217
           ++ Y  +E+I
Sbjct: 207 IKTYKRIEDI 216


>gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 977

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 72/221 (32%), Gaps = 27/221 (12%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           D Y  +     +++   +L      +      ++ +F      + IST            
Sbjct: 121 DDYVWVETESQLKELTDELSNQSVFAVDTEQHSLRSFLGFTALVQIST------------ 168

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                      +D         + +  L   F N    K+ H    D L L R + I + 
Sbjct: 169 ---------QKEDYLLDTIALHDAMGILGAVFANPKICKVFHGGDNDILWLQRDFHIYVV 219

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D      VL   +    +A + + +   +  ++L   +      +   +++ ++A+ 
Sbjct: 220 NLFDTAKACEVL--SKPQKSLAYLLETYCGVSTNKLL---QREDWRQRPLPAEMLQYALT 274

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
           +++ +L +   L  +L  +   + Y   D  +  ++     
Sbjct: 275 DAHYLLYIASCLIAELKQKDNDNSYSYPDVKLKFILEASRR 315


>gi|254573770|ref|XP_002493994.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA
           during nucleotide excision repair [Pichia pastoris
           GS115]
 gi|238033793|emb|CAY71815.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA
           during nucleotide excision repair [Pichia pastoris
           GS115]
 gi|328354189|emb|CCA40586.1| DNA repair protein complementing XP-G cells [Pichia pastoris CBS
           7435]
          Length = 1043

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 15/136 (11%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R    E+    +  ++     FGIP I     EA+   A    +   +G    II+ 
Sbjct: 755 KDQRDS-DEVTQGMIDDIQDMLTRFGIPYITAP-MEAEAQCAELLKLKLVDG----IITD 808

Query: 141 DKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
           D D           Y  +  EK       +E + +  G+   KM+ +  L G   D   G
Sbjct: 809 DSDCFLFGGERI--YKNMFNEKQYVECYFLEEIQRDLGLTRNKMIEIALLVG--SDYTEG 864

Query: 196 IPGIGYKTAALLLQEY 211
           I GIG  TA  +L E+
Sbjct: 865 IKGIGIVTAMEILSEF 880


>gi|84996925|ref|XP_953184.1| endonuclease (xp-g/RAD2 homologue) [Theileria annulata strain
           Ankara]
 gi|65304180|emb|CAI76559.1| endonuclease (xp-g/RAD2 homologue), putative [Theileria annulata]
          Length = 899

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 28/208 (13%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
            P    +      FG+P I     EA+   A         G    +IS D D +   +  
Sbjct: 586 HPYYENIHKLLDHFGVPYIVAPS-EAESQCAYMNR----SGKCYAVISDDSDSLVFGAKC 640

Query: 152 --TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
                Y+    E   ++ + ++ GI  +++  +  + G   D   G+ GIG   A  +++
Sbjct: 641 LLKNFYNDKVFELYKLDRIRRELGIGRKQLALIAIICG--CDYTNGVKGIGIVNALEVIK 698

Query: 210 EYGNLENILINAS------RIKQKKRRE-NILEYAETARLSRKLV-MLRTDVP------- 254
            Y   E++            +K     E  I +  + A ++ ++      D P       
Sbjct: 699 AYPTFEDLYDFRDWATSDLSVKGAVTDECPIRKSYKLAHVNYRVNWTFSPDFPNREAYNM 758

Query: 255 -ITIPLEH---LILEDCNGPRLISFLKA 278
            +   +     L     +   LISF+  
Sbjct: 759 FLNPSVTDSYKLEWRPPDVNSLISFMGR 786


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 1437

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 23/269 (8%)

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T D +      + L  N ++   +   ++  +       +  +++D        +     
Sbjct: 318 TDDAEGEKRVELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAA 377

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               L+ L    IN       V  +  +   + L +     F + T  + A + K I +A
Sbjct: 378 VKAGLKMLYGVEINLVDDGTPVAYRADEP--RDLASAEYVVFDVETTGLSAVYDKVIELA 435

Query: 411 ---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
                    I   ++  D  F +  + I+L+ H + D    +    ++    ++F   + 
Sbjct: 436 AVKMKDGKVIDQFEEMIDPGFPLSELTINLT-HITDDMVHGSKSEVDVFKLFQQFC--DG 492

Query: 462 FLKIGHNIKYDKLVL----HRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQKW--- 512
            + +GHN+ +D   L     R+G++       D + +S +L   R +H + ++A+++   
Sbjct: 493 AIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQYKVS 552

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           L +  +    +  +   +  +     + +
Sbjct: 553 LEHHHRANADAEATGYLLYALEKEAAKMY 581


>gi|321473340|gb|EFX84308.1| hypothetical protein DAPPUDRAFT_47502 [Daphnia pulex]
          Length = 374

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 65/185 (35%), Gaps = 21/185 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP +E    EA+   A         G      + D D +   S     Y T
Sbjct: 141 CKQLLTLMGIPYVEAPC-EAEAQCAALVK----AGKVYATATEDMDSLTFGSNVLLRYLT 195

Query: 158 VKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             E      ++  ++ ++       ++ + L  + G   D    I GIG K A  L+ ++
Sbjct: 196 YSEAKKMPIKEFHLDKILDGLSYTMDEFIDLCIMLG--CDYCDTIKGIGAKRAKELIDKH 253

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
             +E ++ N    K+    EN   Y E  RL +       DV     L  L     +   
Sbjct: 254 RCIEKVIENLDT-KKYTVPENW-PYQEARRLFKT-----PDVADAETL-DLKWTQPDEEG 305

Query: 272 LISFL 276
           L+ F+
Sbjct: 306 LVKFM 310


>gi|169617554|ref|XP_001802191.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
 gi|111059251|gb|EAT80371.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
          Length = 805

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 80/229 (34%), Gaps = 35/229 (15%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
           ++INS   P     E  +     P ++ + T +   + + + + +L+T    +  +    
Sbjct: 204 TEINSYDYP-PSVYEISEPTPYQPFDSTTATYVDTPEAVAEMLAELKTAKEIAVDLE--- 259

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
                              D+ S+      + +S              +  L  L + F 
Sbjct: 260 -----------------HHDNRSYIGMVSLMQISTRDKDWIVDTLKPWRRKLECLNEVFA 302

Query: 459 NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           + + LK+ H    D + L R  G+ + G  D    +  L  G     +A + ++ + +  
Sbjct: 303 DPNILKVLHGAYMDIMWLQRDLGLYIVGLFDTHHAARSL--GYPGGSLAYLLERHVQF-- 358

Query: 518 KEILKSRKSSIPIDKISD----SQVQEHAIENSNVILQLWLLLRPKLIV 562
                  +    +          ++ E+A  +++ +L ++  +R +L+ 
Sbjct: 359 -----KAQKQYQLADWRIRPLGKELFEYARADTHFLLYIFDNMRNELVE 402


>gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 1437

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 67/174 (38%), Gaps = 19/174 (10%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDSTGK 442
           E      F + T  + + +   I I    +   +  +   K       LS  T   ++  
Sbjct: 416 EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIERFDKFINPHHPLSEQTINLTSIT 475

Query: 443 NTLTKE------ILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
           + +         ++   + F+ +      GHN+++D       L R G S   +   D +
Sbjct: 476 DEMVSAADDEAIVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRNGFSEITQPVVDTL 533

Query: 491 LMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +S +L   ++ H + S+A+K+   L +  +    +  +   + K+ D+  +++
Sbjct: 534 EVSRLLHPEQNRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMYKLLDAFNEKY 587


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 104/333 (31%), Gaps = 44/333 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 418 EALSEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 475

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T E++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 476 LTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVI 535

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-S 546
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 536 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 585

Query: 547 NVILQLWLLLR-PKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 586 KEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 643

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD------- 656
           + +  +  +      E   + S    G+I F  +      + +         +       
Sbjct: 644 ERVPRIPRSQLKKMRENLLIGSACDKGEI-FEAMMQKGIEEARNRAKFYDYIEVMPKAVY 702

Query: 657 ----LEQINCGDNPIIKNILEWRQLSKIKSTYA 685
                +++   ++ + + I    ++ K      
Sbjct: 703 APLIEQELVKNEHDLEEIIQNLVEIGKSLDKIV 735


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           casei ATCC 334]
          Length = 1444

 Score = 53.1 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 23/269 (8%)

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T D +      + L  N ++   +   ++  +       +  +++D        +     
Sbjct: 325 TDDAEGEKRVELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAA 384

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               L+ L    IN       V  +  +   + L +     F + T  + A + K I +A
Sbjct: 385 VKAGLKMLYGVEINLVDDGTPVAYRADEP--RDLASAEYVVFDVETTGLSAVYDKVIELA 442

Query: 411 ---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
                    I   ++  D  F +  + I+L+ H + D    +    ++    ++F   + 
Sbjct: 443 AVKMKDGKVIDQFEEMIDPGFPLSELTINLT-HITDDMVHGSKSEVDVFKLFQQFC--DG 499

Query: 462 FLKIGHNIKYDKLVL----HRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQKW--- 512
            + +GHN+ +D   L     R+G++       D + +S +L   R +H + ++A+++   
Sbjct: 500 AIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQYKVS 559

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           L +  +    +  +   +  +     + +
Sbjct: 560 LEHHHRANADAEATGYLLYALEKEAAKMY 588


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei BD-II]
          Length = 1444

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 99/269 (36%), Gaps = 23/269 (8%)

Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350
           T D +      + L  N ++   +   ++  +       +  +++D        +     
Sbjct: 325 TDDAEGEKRVELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAA 384

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
               L+ L    IN       V  +  +   + L +     F + T  + A + K I +A
Sbjct: 385 VKAGLKMLYGVEINLVDDGTPVAYRADEP--RDLASAEYVVFDVETTGLSAVYDKVIELA 442

Query: 411 ---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
                    I   ++  D  F +  + I+L+ H + D    +    ++    ++F   + 
Sbjct: 443 AVKMKDGKVIDQFEEMIDPGFPLSELTINLT-HITDDMVHGSKSEVDVFKLFQQFC--DG 499

Query: 462 FLKIGHNIKYDKLVL----HRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQKW--- 512
            + +GHN+ +D   L     R+G++       D + +S +L   R +H + ++A+++   
Sbjct: 500 AIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQYKVS 559

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           L +  +    +  +   +  +     + +
Sbjct: 560 LEHHHRANADAEATGYLLYALEKEAAKMY 588


>gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1]
 gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1]
          Length = 374

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 31/206 (15%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH--SKPIAIAISTLDQKDDTSFKVET 426
             I +   + Q  ++  T    +       +D F+  +  + +                 
Sbjct: 7   QWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVG---------------- 50

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG 485
                     +     + L  +  S   +  E+E  +K+ H    D  V  R  G     
Sbjct: 51  --------DGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVP 102

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  L +  L     S   + + ++ L     ++ K    S  + +        +A ++
Sbjct: 103 LFDTQLAAAYL-GMAHSMGYSKLVKEVLDI---DLPKDETRSDWLQRPLTEMQMRYAADD 158

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER 571
              + Q++L L  +L  EK   + E 
Sbjct: 159 VQHLAQVYLALDTRLSEEKRAWLLED 184


>gi|121705450|ref|XP_001270988.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
           NRRL 1]
 gi|119399134|gb|EAW09562.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
           NRRL 1]
          Length = 778

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 79/217 (36%), Gaps = 28/217 (12%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           +     L  +   P  + + T +   + +++ + +L++    +  +              
Sbjct: 211 ESTYTVLPPVEYLPFESTTATFVDTLEGVKEMLSELKSAKEIAIDLE------------- 257

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
                    D  S+      + +S              +E L  L   F +   LK+ H 
Sbjct: 258 -------HHDMHSYHGLVSLMQISTRDKDWVVDTLKPWREDLQILNDVFADPAILKVLHG 310

Query: 469 IKYDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKS 526
              D + L R  G+ + G  D    +  L+   RS   +  + QK++++   E  K  + 
Sbjct: 311 SSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKRS---LKFLLQKFVNF---EADKRYQM 364

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           +    +   S + ++A  +++ +L ++  LR +L+  
Sbjct: 365 ADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNELLEN 401


>gi|70925673|ref|XP_735493.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56509203|emb|CAH86607.1| hypothetical protein PC302077.00.0 [Plasmodium chabaudi chabaudi]
          Length = 172

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 497 DSGRSS---HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
           +  + +       ++  K ++  +K +  +++S   I +I++  +  + I  +  ++ L+
Sbjct: 30  NPNKENNFKFTFTNVEVKHINNIKKIVFGNKRS---IYEITEEDMMSYCISRNIFLIILF 86

Query: 554 LLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
             L   L     +L +Y ++++P+I  +S++E  GI ++Q  ++++    +  L+  ++ 
Sbjct: 87  NYLINLLKNNMNILTLYIKVEQPLIFCISEIEKEGIYLNQKKIQEIQNNSNDPLM-YKKQ 145

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKL 637
           I  L G   NL+S KQ+  +L   L
Sbjct: 146 IEQLCGYDINLNSSKQVSSLLSKAL 170


>gi|301169093|emb|CBW28690.1| ribonuclease D [Haemophilus influenzae 10810]
          Length = 382

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N   +  I +   + +     +   + +       +  +  K   I +   ++     
Sbjct: 5   CQNPPHFRVITDNAALLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLID 64

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYG 480
               T F                              N   LK+ H+   D LV L  + 
Sbjct: 65  PLAITDFSP----------------------FVALLSNPKVLKVLHSCSEDLLVFLQEFD 102

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              R   D  +M+  L  G S+  +A +AQ++L+    EI K    +  I +       +
Sbjct: 103 QLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNV---EIDKGATRTNWIKRPLSDIQLQ 158

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L L+ +L  +L  
Sbjct: 159 YAAGDVWYLLPLYHILEKELAK 180


>gi|288559640|ref|YP_003423126.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
 gi|288542350|gb|ADC46234.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
          Length = 328

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 28/191 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  GIP ++ +G E +   A         G A  + S D D +   +P      T+
Sbjct: 136 KKLLEYMGIPYVQAKG-EGEAQGAYMVK----NGDAWAVASQDYDCLLFGAPRIIRNLTL 190

Query: 159 KE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
                  E ++++ V+ +  +  E++V +  + G   D   GI GIG KT   L+++  +
Sbjct: 191 SGGLSNLEYLELDKVLTEIDLSREQLVDVALMVG--TDFNEGIYGIGAKTGLKLIRQ-NS 247

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
           LE+IL+       +   + + E      LS  +               +  +  +  +L 
Sbjct: 248 LEDILVQKGITDVEVEPDELRE----IFLSHDVNTDY----------KIKFKSADKEKLC 293

Query: 274 SF-LKALEFTK 283
            F  +   F++
Sbjct: 294 EFMCEEHGFSE 304


>gi|242000896|ref|XP_002435091.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
 gi|215498421|gb|EEC07915.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
          Length = 868

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 27/225 (12%)

Query: 81  KANRPKIPEMLLPQLPL-VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIS 139
           K  R      +  QL +  +   + FG+P +   G EA+   A        +G     ++
Sbjct: 632 KQQRQAT--SMSDQLVMECQELLRMFGLPFVVSPG-EAEAQCAWLEEQGLTQGT----VT 684

Query: 140 TDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
            D D     + T   +    + +     ++ +  + G+  +K+V    L G   D   G+
Sbjct: 685 DDSDAWLFGARTVYRHLFASDRRPSVYRLQDLATQLGLNRQKLVAFALLCG--SDYTAGV 742

Query: 197 PGIGYKTAALLLQEYGNLEN--ILINASRIKQKKRRENI----LEYAETARL-------S 243
            G+G  TA  +L E+   +   +L N     ++ +RE +       +   RL       S
Sbjct: 743 SGVGPITAMEVLSEFSGEDALQLLENFRTWLERAKREKVHPGSRTRSHLVRLTVEPGFPS 802

Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISF-LKALEFTKLINR 287
             +V    +  +    E       N   L S+ L  L        
Sbjct: 803 APVVRAYLEPSVDASKETFSWGTPNLDELRSYPLPRLSALGWQRE 847


>gi|312381749|gb|EFR27423.1| hypothetical protein AND_05878 [Anopheles darlingi]
          Length = 1735

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 96/322 (29%), Gaps = 90/322 (27%)

Query: 695  RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754
                +     +  T+T R +       +   +  +G ++R    +P   +++ AD    E
Sbjct: 932  DCGAILPQVVVCGTLTRRASEPTWMTASNAQRERIGSELRAMVQAPIGYRIVGADVDSQE 991

Query: 755  LRILAHIAKITPLYQ--VFENS---------------LDIHRMVAAEIFGVNIEKVSPQM 797
            L I + +     +                         D+H + AA +            
Sbjct: 992  LWIASVL-GDAGVASCGALHGGTPFGWMTLSGTKATRTDMHSVTAAAV---------GIS 1041

Query: 798  RRHAKTINFSIIYGIS---PFRLATQLR--IPRSEAADYIKRYF------HRFPGIHEYI 846
            R HAK IN++ IYG       RL  Q    I ++EA     + F        +    ++I
Sbjct: 1042 RDHAKVINYARIYGAGQQFAERLLKQFNPTISQAEARSKATKMFSLTKGRRLYRLREQWI 1101

Query: 847  EK--------TKNFVRQ------------------NGYVETIFGRRIHYDEINSPKSSIR 880
            E         T+    +                   G  E++   R   +EI S      
Sbjct: 1102 ETHPDAPRHCTQYEALRLARLFNHAIDELFYPPQWCGGTESVMFNR--LEEIASADRPST 1159

Query: 881  NI---------------------NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919
                                        IN  +Q  A D     ++ +   +ED     +
Sbjct: 1160 PFLGGRLSRALEPEPTHSGDVDRFMPTRINWVVQSGAVDFLHLMLVCMRWLMEDR---VR 1216

Query: 920  MLLQIHDELVFEVPEEEITTAS 941
              L  HDE+ + V E+    A+
Sbjct: 1217 FCLSFHDEVRYLVAEQYAHKAA 1238


>gi|11497880|ref|NP_069102.1| flap endonuclease-1 [Archaeoglobus fulgidus DSM 4304]
 gi|28380012|sp|O29975|FEN_ARCFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|42543625|pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
 gi|42543626|pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
 gi|42543629|pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
 gi|2650376|gb|AAB90967.1| DNA repair protein RAD2 (rad2) [Archaeoglobus fulgidus DSM 4304]
          Length = 336

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 85/256 (33%), Gaps = 64/256 (25%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ------------------LPLV----R 99
             +FD     F+     + K  R +  EM +                       +    +
Sbjct: 76  VFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAK 135

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---------- 149
                 GIP ++       +  A   Y+A K        +  +D   L+           
Sbjct: 136 TLLSYMGIPFVDAP----SEGEAQAAYMAAKGDVE---YTGSQDYDSLLFGSPRLARNLA 188

Query: 150 -------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
                  P   +Y  VK E I +E  +K+ G+  E+++ +  L G   D   G+ G+G K
Sbjct: 189 ITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVG--TDYNEGVKGVGVK 246

Query: 203 TAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
            A   ++ YG++          +  K  +  +++ E  R +  L    TD      +E  
Sbjct: 247 KALNYIKTYGDI---------FRALKALKVNIDHVEEIR-NFFLNPPVTD---DYRIE-- 291

Query: 263 ILEDCNGPRLISFLKA 278
              + +  + I FL  
Sbjct: 292 -FREPDFEKAIEFLCE 306


>gi|330941897|gb|EGH44622.1| ribonuclease D [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 377

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +   + +   + +++   +       +D F+     IA         +++ +    
Sbjct: 6   HWIRDDDSLARHCAQWQSLPFVALDTEFMRVDTFYP----IAALLQIGDGQSAWLI---- 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
                         + L       L    EN   +K+ H    D  VL R  G       
Sbjct: 58  --------------DPLLINDWRPLSALLENPDVIKVLHACSEDLEVLLRLTGSLPVPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L +  L+ G S    + + Q+ L     ++ K    S  + +        +A E++ 
Sbjct: 104 DTQLAAAYLNLGFSM-GYSRLVQEVLDI---DLPKGETRSDWLQRPLSETQISYAAEDAV 159

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +L+ +LR +L  +K   + + 
Sbjct: 160 HLAELFTILRARLSDDKYAWLLDD 183


>gi|148825327|ref|YP_001290080.1| ribonuclease D [Haemophilus influenzae PittEE]
 gi|148715487|gb|ABQ97697.1| translation-associated GTPase [Haemophilus influenzae PittEE]
          Length = 380

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N   +  I +   + +     +   + +       +  +  K   I +   ++     
Sbjct: 5   CQNPPHFRVIADNATLLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLID 64

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYG 480
               T F                              N   LKI H+   D LV L  + 
Sbjct: 65  PLAITDFSPFIA----------------------LLANPKVLKILHSCSEDLLVFLQEFD 102

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              R   D  +M+  +  G S+  +A +AQ++L+    EI K    +  I +       +
Sbjct: 103 QLPRPMIDTQIMARFIGLGASA-GLAKLAQQYLNI---EIDKGATRTNWIKRPLSDIQLQ 158

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L L+ +L  +L  
Sbjct: 159 YAAGDVWYLLPLYHILEKELAK 180


>gi|322694710|gb|EFY86532.1| DNA excision repair protein Rad2 [Metarhizium acridum CQMa 102]
          Length = 1168

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K +R    E+    +   +   + FGIP I     EA+   A    +   +G    I++ 
Sbjct: 863 KKDRRDADEVTQVMITECQALLRLFGIPYITAP-MEAEAQCAELVRLGIVDG----IVTD 917

Query: 141 DKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           D D                 + ++    + + K+  +  ++++ L  L G   D   G+P
Sbjct: 918 DSDTFLFGGTRVYKNMFNSNKFVECYISKDLEKELSLSRDQLISLAQLLG--SDYTEGLP 975

Query: 198 GIGYKTAALLLQEYGNLENI 217
           G+G  TA  +L E+     +
Sbjct: 976 GVGPVTAVEILSEFPGKSGL 995


>gi|319898087|ref|YP_004136284.1| ribonuclease d [Haemophilus influenzae F3031]
 gi|317433593|emb|CBY81977.1| ribonuclease D [Haemophilus influenzae F3031]
          Length = 380

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +V T F  L +    D    + +    ++    F     N   LKI H+   D L
Sbjct: 36  DTEFMRVSTYFPKLGLIQLYDGERVSLIDPLAITDFSPFVALLSNPKVLKILHSCSEDLL 95

Query: 475 V-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V L  +    R   D  +M+  L  G S+  +A +AQ++L+    EI K    +  I + 
Sbjct: 96  VFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNI---EIDKGATRTNWIKRP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                 ++A  +   +L L+ +L  +L  
Sbjct: 152 LSDIQLQYAAGDVWYLLPLYHILEKELAK 180


>gi|295659299|ref|XP_002790208.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226281913|gb|EEH37479.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 827

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 111/327 (33%), Gaps = 25/327 (7%)

Query: 256 TIPLEHLILEDCNG-PRLISFLKAL--EFTKLINRVATTYDCDAANI--EPVVLDINTTE 310
              LE       +    L+    A   EFT +I +++ + +  +A +   P      +  
Sbjct: 79  EDDLEDNWRSIVDVIDELLEKADACLDEFTGVIKKLSPSQEQRSAAVSKRPATAQFPSVY 138

Query: 311 NKGIA--IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
           + G +   + ++   +    +  S             TP    L               Y
Sbjct: 139 DFGPSKISKPQLLFISRPNNNDTSPFKPLLRSKPHAITPLSESLGETGPNGTITFYKHPY 198

Query: 369 TK-IVNTKDIQQWVQKLETIGSASFKIIT-------DTMDAFHSKP-IAIAIST-LDQKD 418
              I N+   Q        +   SF   T       + + +  ++   A  I+  L+  D
Sbjct: 199 ETEIRNSPYPQSIYSISPPVEYKSFDATTATFVDTLEGVHSMLAELKEATEIAIDLEHHD 258

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             S+      + +S              +E L  L + F +   LK+ H    D + L R
Sbjct: 259 VHSYHGLVCLMQISTREQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQR 318

Query: 479 -YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G+ + G  D    S  L+   RS   +  + +K++++  +   K  + +    +    
Sbjct: 319 DLGLYIVGLFDTYHGSVALNYPKRS---LKFLLEKFVNFKAE---KKYQMADWRLRPLLP 372

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE 563
            + ++A  +++ +L ++  +R  L+  
Sbjct: 373 GMFDYARSDTHYLLYIYDHIRNSLVEN 399


>gi|148909222|gb|ABR17711.1| unknown [Picea sitchensis]
          Length = 317

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 25/183 (13%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + I    +  D +       + L+   +            ++   K   E+ +  K+ H+
Sbjct: 35  LVIGFDCEGVDLARYGRLCIMQLAFEDAVYLVDAVEGGHLLMQACKPALESVYVTKVVHD 94

Query: 469 IKYDKLVLH-RYGISMRGFEDIMLMSYVLD--------SGRSSHDIASIAQ-KWLSYTRK 518
            K D   L+ +YGI +    D  +   +++               +  +A  ++   +  
Sbjct: 95  CKRDSEALYFQYGIKLNNVVDTQIAYSLIEEQEGRKWAPDEYISFVGLLADPRYCGVSYA 154

Query: 519 EILKSRKSSIPIDKISDSQVQEH----------AIENSNVILQLWLLLRPKLIVEKLLHV 568
           E     K  +      D +  EH          A ++   +L ++  +  KL +  L  +
Sbjct: 155 E-----KEEVRTLLREDPKFWEHRPLTYMMKKTAADDVRFLLHIYNKMIEKLELHSLWQL 209

Query: 569 YER 571
             R
Sbjct: 210 AVR 212


>gi|145636341|ref|ZP_01792010.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
 gi|145270506|gb|EDK10440.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
          Length = 382

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N   +  I +   + +     +   + +       +  +  K   I +   ++     
Sbjct: 5   CQNPPHFRVIADNAALLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLID 64

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYG 480
               T F                              N   LK+ H+   D LV L  + 
Sbjct: 65  PLAITDFSPFIA----------------------LLANPKVLKVLHSCSEDLLVFLQEFD 102

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              R   D  +M+  L  G S+  +A +AQ++L+    EI K    +  I +       +
Sbjct: 103 QLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNV---EIDKGATRTNWIKRPLSDIQLQ 158

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L L+ +L  +L  
Sbjct: 159 YAAGDVWYLLPLYHILEKELAK 180


>gi|304373603|ref|YP_003858348.1| RnaseH ribonuclease [Enterobacteria phage RB16]
 gi|299829559|gb|ADJ55352.1| RnaseH ribonuclease [Enterobacteria phage RB16]
          Length = 311

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 16/146 (10%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR--------LATQAFGIPAIEI 112
             + FD     +R      YK  R             +            +      + +
Sbjct: 75  IVLAFD-DNKYWRRSKAWYYKKKRQMEHAESEWDWDFLNGFLHPTYDEIRENLPYKGLRV 133

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKK 171
              EADDII   T  A  +G  V I+S D D   L        +   +++ +       K
Sbjct: 134 DFAEADDIIGVVTKNAVAQGKRVLIVSADSDFTALQKYQGVRQWSPTQKKWVTP-----K 188

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIP 197
           +G  P   + ++ + GD  D+I  I 
Sbjct: 189 YG-TPRNDLRMKIIKGDKKDSIACIK 213


>gi|66817216|ref|XP_642486.1| hypothetical protein DDB_G0277749 [Dictyostelium discoideum AX4]
 gi|60470569|gb|EAL68548.1| hypothetical protein DDB_G0277749 [Dictyostelium discoideum AX4]
          Length = 1173

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 447  KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSS 502
            KE   +LK+ FEN    K  +N+K    +L   GI ++ G  D  + S+VL+S  + 
Sbjct: 1068 KERWEFLKEVFENPTSFKYQYNMKPQLKLLAHKGIYLKYGCMDPKVASWVLNSEINK 1124


>gi|259417301|ref|ZP_05741220.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B]
 gi|259346207|gb|EEW58021.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B]
          Length = 204

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 25/214 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
                  ++     +    T  ++    +   + +S  D                  H  
Sbjct: 7   QNDLPDSVDLGPVVAIDCETMGLNPHRDRLCVVQMSGGDGD---------------AHLV 51

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYV 495
           Q S  +          L     N   LK+ H  ++D   L HR+G          + S +
Sbjct: 52  QISKDQTEAPN-----LTSMLTNPDVLKLFHYGRFDIAALYHRFGALTAPVYCTKIASRL 106

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           + +    H + ++ Q  L    ++I K ++ S            ++A  +   + +L   
Sbjct: 107 VRTYTDRHGLKNLTQDLLG---QDISKQQQMSDWGADTLTRAQMDYAASDVLHLHRLRGA 163

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           L  +L  E    + +      +   +++++ G  
Sbjct: 164 LDLRLAREGRSDLAQAC-FDFLPTRARLDLAGWP 196


>gi|221053221|ref|XP_002257985.1| 3'-5' exonuclease [Plasmodium knowlesi strain H]
 gi|193807817|emb|CAQ38522.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H]
          Length = 384

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
            +  LK+  E+   +KI H+ + D  +L   Y IS+    D  +  Y L S  +  D+  
Sbjct: 117 FIKCLKELLEDGRIVKITHDCREDCSILFNQYSISLNNIFDTQVA-YNLLSKETKKDLYQ 175

Query: 508 IAQKWLSY 515
           I+   L Y
Sbjct: 176 ISYDDLLY 183


>gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11]
 gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11]
          Length = 471

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 104/333 (31%), Gaps = 35/333 (10%)

Query: 236 YAETARLSRK---LVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATT 291
             ETARL+ +   L +L T++P+ I L     +      +    LK +   +L + +   
Sbjct: 130 AEETARLAAERAHLALLLTEIPVAIVLVSPTHQIMLYDGQAADVLKQVHVPRLSSSIYDY 189

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
           +           L     E       T+ +    ++  + S  S     I+S        
Sbjct: 190 FAESELRPGFEQLTEARREVDVEVHGTKGNLSFQLRLKKLSEASGFMILIDSTNARIAPE 249

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA- 410
             R           D+   I N          L  +    F   T  +       + I  
Sbjct: 250 AARPLIYDFDLTERDTEKAIENCS--------LSELSFTVFDTETTGLMPNKDDIVQIGA 301

Query: 411 ---ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF-----FENEHF 462
              ++      +   ++      +   +S+     +T+  +    L+       F  E  
Sbjct: 302 VRVVNGRMVPGERIDQLVNPGRPIPPASSKVHGISDTMVADAPQPLEAVADFHEFARESV 361

Query: 463 LKIGHNIKYDKLVLHRYGI-----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           + + HN  +D   L +YG            D +L+S V+      H + ++ ++     R
Sbjct: 362 I-VAHNAPFDLAFLQKYGKVAGLEWPHPILDTVLLSAVVFGSNEVHTLDALCERLCIDIR 420

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
            E+  +         + D++    A+     IL
Sbjct: 421 PEVRHTA--------LGDAEATAEALCKLLPIL 445


>gi|325968460|ref|YP_004244652.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
           768-28]
 gi|323707663|gb|ADY01150.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
           768-28]
          Length = 349

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 94/262 (35%), Gaps = 55/262 (20%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNS 52
           MQ  N +  +D  + +Y+ F A     R+ DG P         + ++G    L++ +   
Sbjct: 21  MQLSNRIIAMDAYNALYQ-FLA---SIRQPDGTPLMDTKGRITSHLSGL---LYRTINFL 73

Query: 53  RKESIASHFAVIFDYPAVTFRN------------------EIYPDYKAN--RPKIPEMLL 92
                  +   +FD      +                   ++  + K    R      L 
Sbjct: 74  ENRIWPVY---VFDGKPPEEKTLEIVRRRRVREEAMDKWVKLLEEGKREEARKYAQRALF 130

Query: 93  PQLPLV---RLATQAFGIPAI--EIQGFEADDIIAT--YTYIAEKEGFAVTIISTDKDLM 145
               +V   +      GIP +     G     +IA     + A  + +   +    + + 
Sbjct: 131 LTDDMVEDAKKLLVLMGIPVVQAMADGEAQAAVIAKEGKAWAAGSQDYDSLLFGAPRLVR 190

Query: 146 QLVS------PTTCLYDTVKEEKIDIEHVIKKWGIPPE-KMVCLQALTGDSIDNIP-GIP 197
            L        P    Y  ++ E I++  +++   +    +++ L  L G   D  P G+P
Sbjct: 191 NLAITGRRKLPNKDEYVEIRPEIIELNEILRALKLKDRIQLIDLAVLLG--TDLNPDGVP 248

Query: 198 GIGYKTAALLLQEYGNLENILI 219
           GIG + A  L+QE+G+LE +L 
Sbjct: 249 GIGPQRALKLIQEFGSLEKLLQ 270


>gi|320586182|gb|EFW98861.1| DNA excision repair protein rad2 [Grosmannia clavigera kw1407]
          Length = 1287

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 90/274 (32%), Gaps = 41/274 (14%)

Query: 63   VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122
             +F+      RN+     K +R    E+ +  +   +   + FGIP I     EA+   +
Sbjct: 879  AVFEQEVKALRNQQ----KKDRRDADEVTMVMVSECQALLRLFGIPYITAP-MEAEAQCS 933

Query: 123  TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKM 179
                +   +G    I++ D D                 + ++      + K+  +  EK+
Sbjct: 934  ELVSLGLVDG----IVTDDSDTFLFGGTRVYKNMFNGNKFVECFLAADLEKEMSLSREKL 989

Query: 180  VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI--------------NASRIK 225
            + L  L G   D   G+PG+G  TA  +L E+   + +                  +   
Sbjct: 990  ISLAQLLG--SDYTDGLPGVGPVTAMEILSEFPGPQGLEEFRTWWDDVQMHGRSREADAG 1047

Query: 226  QKKRRENILEYAETARL-----SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280
               RR+          L     +  +        +    E       +   L SF     
Sbjct: 1048 SPFRRKFRKSQGTKLFLPTGFPNAAVAAAYKKPEVDSSTEPFQWGVPDLDGLRSF----- 1102

Query: 281  FTKLINRVATTYDCDAANIEPVVLDINTTENKGI 314
               L++ +  + D     + PV+ D+N  E +G 
Sbjct: 1103 ---LMSTIGWSQDRTDEVLVPVIRDMNRREAEGT 1133


>gi|302817816|ref|XP_002990583.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
 gi|300141751|gb|EFJ08460.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
          Length = 1449

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 65/200 (32%), Gaps = 29/200 (14%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            + +  I   + ++   Q L      +      ++ +F      I IST           
Sbjct: 757 EEPFVWIETKEALEDLAQVLSEESEFAVDTEQHSIRSFLGFTALIQIST----------- 805

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM 483
                       +D         + +  L+  F N    K+ H    D L L R + I +
Sbjct: 806 ----------YKRDYLIDAIALHDEMETLRPVFANASICKVFHGADSDILWLQRDFHIYV 855

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-KEILKSRKSSIPIDKISDSQVQEHA 542
               D      VL  G+    +A + Q + + +  K   KS     P+       +  +A
Sbjct: 856 VNLFDTARACDVL--GKPQRSLAYLLQTYCNISTNKAFQKSDWRQRPL----PEDILLYA 909

Query: 543 IENSNVILQLWLLLRPKLIV 562
             +++ +L +   L  +L+ 
Sbjct: 910 RSDAHFLLYIARKLYSELLQ 929


>gi|316967875|gb|EFV52241.1| putative ubiquitin--protein ligase [Trichinella spiralis]
          Length = 1284

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 27/147 (18%)

Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP-------------LYQVFEN 773
             +G ++R   I+P     + AD    EL I A  +                 L      
Sbjct: 773 DRIGSELRGLIIAPKGYCFVGADVDSQELWIAALFSDSYGVKIHGSTPISWILLKGDKSK 832

Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-----IPRSEA 828
             D H + A E+ GV         R  AK +N+  IYG         L+     +   + 
Sbjct: 833 GTDQHSLTAKEM-GV--------SRSQAKILNYGRIYGAGRPFATRLLKTFLPTLSDEDV 883

Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQ 855
               ++ + +  G   Y+ +     R 
Sbjct: 884 KKMARKLYRKTKGSAVYLRELTEKGRT 910


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei str. Zhang]
          Length = 1444

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 73/178 (41%), Gaps = 21/178 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLS 432
           + L +     F + T  + A + K I +A         I   ++  D  F +  + I+L+
Sbjct: 414 RDLASAEYVVFDVETTGLSAVYDKVIELAAVKMKDGKVIDQFEEMIDPGFPLSELTINLT 473

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM--RGF 486
            H + D    +    ++    ++F   +  + +GHN+ +D   L     R+G++      
Sbjct: 474 -HITDDMVHGSKSEVDVFKLFQQFC--DGAIMVGHNVTFDVGFLDNGYERHGLADIDNPV 530

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            D + +S +L   R +H + ++A+++   L +  +    +  +   +  +     + +
Sbjct: 531 IDTLELSRMLHPERKNHKLDTLAKQYKVSLEHHHRANADAEATGYLLYALEKEAAKMY 588


>gi|238484333|ref|XP_002373405.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
           NRRL3357]
 gi|220701455|gb|EED57793.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
           NRRL3357]
          Length = 434

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 113/335 (33%), Gaps = 26/335 (7%)

Query: 247 VMLRTDVPITI-----PLEHLILEDCNG-----PRLISFLKALEFTKLINRVATTYDCD- 295
               TD+P+        +E       +       R  + L    FT +I R++ +     
Sbjct: 65  ATAGTDLPVPTLQDEDSIEDNWRGVVDVIDALLERADACLDE--FTGVIKRLSPSQQEQS 122

Query: 296 -AANIEPVVLDINTTENKGIA--IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
            A   +       T  + G +   + ++  +  +  +  S              P +  +
Sbjct: 123 AAKATKKTTSKFPTIYDYGPSKIPKPQLYFERQVDNADDSPFKPLLRTKPHAVVPLEKSV 182

Query: 353 ERLQKLS-QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           E   +   +  I    Y +           Q  E+  +     +    +       A  I
Sbjct: 183 ESSDRNPYETEIRAARYPESTYAVSSPVPYQPWESTTATFVDTLEGVKEMLEELKSAKEI 242

Query: 412 ST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           +  L+  D  S++     + +S              +E L  L + F +   LK+ H   
Sbjct: 243 AIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVFADPSILKVFHGSS 302

Query: 471 YDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
            D + L R  G+ + G  D    +  L+   RS   +  + QK++++   E  K  + + 
Sbjct: 303 MDIIWLQRDLGLYVVGMFDTYHAACALNYPKRS---LKFLLQKFVNF---EADKRYQMAD 356

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
              +     + ++A  +++ +L ++  LR +LI  
Sbjct: 357 WRIRPIPEGMFDYARSDTHYLLHIFDHLRNELIEN 391


>gi|329850483|ref|ZP_08265328.1| ribonuclease D [Asticcacaulis biprosthecum C19]
 gi|328840798|gb|EGF90369.1| ribonuclease D [Asticcacaulis biprosthecum C19]
          Length = 417

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 27/200 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T I NT D+  + + +++    +          +  K   I  ++ D           I 
Sbjct: 2   TPITNTNDLIAFCEAIKSAPFITVDTEFMRETTYWPKLCLIQAASEDHA--------AII 53

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
             L+                 L        +E  LK+ H  + D  +    G       D
Sbjct: 54  DPLAKSLD-------------LKPFLDILADEKILKVFHACRQDMEIFVNLGTMPMPIFD 100

Query: 489 IMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             + +       + ++D  S+ ++ L     +I K  + +    +    Q  ++A+ +  
Sbjct: 101 TQVAAMAAGYGDQVAYD--SLVRQKLKI---DIDKGSRFTDWSRRPLSDQQLQYALGDVT 155

Query: 548 VILQLWLLLRPKLIVEKLLH 567
            + +L+  LR +L  E  L 
Sbjct: 156 HLAKLYPKLRDRLAREGRLE 175


>gi|322712027|gb|EFZ03600.1| XPG domain containing protein [Metarhizium anisopliae ARSEF 23]
          Length = 1191

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K +R    E+    +   +   + FGIP I     EA+   A    +   +G    I++ 
Sbjct: 864 KKDRRDADEVTQVMVTECQALLRLFGIPYITAP-MEAEAQCAELVKLGIVDG----IVTD 918

Query: 141 DKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           D D                 + ++    + + K+  +  ++++ L  L G   D   G+P
Sbjct: 919 DSDTFLFGGTRVYKNMFNSNKFVECYIGKDLEKELSLSRDQLISLAQLLG--SDYTEGLP 976

Query: 198 GIGYKTAALLLQEYGNLENI 217
           G+G  TA  +L E+     +
Sbjct: 977 GVGPVTAVEILSEFPGKSGL 996


>gi|66391500|ref|YP_239025.1| 5'-3' DNase [Enterobacteria phage RB43]
 gi|62288588|gb|AAX78571.1| rnh RNaseH [Enterobacteria phage RB43]
          Length = 311

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 16/146 (10%)

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR--------LATQAFGIPAIEI 112
             + FD     +R      YK  R             +            +      + +
Sbjct: 75  IVLAFD-DNKYWRRSKAWYYKKKRQMEHAESEWDWDFLNGFLHPTYDEIRENLPYKGLRV 133

Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKK 171
              EADDII   T  A  +G  V I+S D D   L        +   +++ +       K
Sbjct: 134 DFAEADDIIGVVTKNAVAQGKRVLIVSADSDFTALQKYQGVRQWSPTQKKWVTP-----K 188

Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIP 197
           +G  P   + ++ + GD  D+I  I 
Sbjct: 189 YG-TPRNDLRMKIIKGDKKDSIACIK 213


>gi|332290211|ref|YP_004421063.1| ribonuclease D [Gallibacterium anatis UMN179]
 gi|330433107|gb|AEC18166.1| ribonuclease D [Gallibacterium anatis UMN179]
          Length = 377

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 61/192 (31%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           SY  I     ++Q  ++       +     + + ++++K   I +               
Sbjct: 3   SYQIIQQDAQLKQLCEQARHYSVVALDTEFERVRSYYAKLGLIQLYF------------- 49

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-G 485
                      D    + LT            + + LKI H    D  + H+    +   
Sbjct: 50  ---------GADVALIDPLTITDWQPFIALLADANVLKILHASGEDIEIFHQQFQQIPTP 100

Query: 486 FEDIMLMS-YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +M+ ++     +   +  +AQ +L     E+ K    +  + +    +   +A  
Sbjct: 101 MLDTQIMANFLGFPQSAGFAL--LAQHYLQV---ELDKKASRTDWLKRPLSERQLNYAAA 155

Query: 545 NSNVILQLWLLL 556
           +   +L ++  +
Sbjct: 156 DVYYLLPIYQKM 167


>gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
 gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
          Length = 1435

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 85/239 (35%), Gaps = 24/239 (10%)

Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349
             Y+ D   +E + L  N ++    +  T+  +       +  +++D     +  +    
Sbjct: 323 EKYEGDQKRVE-LHLHTNMSQLDATSTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYHT 381

Query: 350 LFLERLQ--KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
              E+++     +  + +D    ++N  D+       E      F + T  + + +   I
Sbjct: 382 GASEKIKILYGVEANMIDDHALLVLNPADMT-----YEDREFVIFDVETTGLSSVYDTII 436

Query: 408 AIAISTLDQKD--DTSFKVETIFIDLSVHT------SQDSTGKNTLTKEILSYLKKFFEN 459
            I    +      +   K       LS  T      + +  G       ++   K F+ +
Sbjct: 437 EIGAVKMKNGKVLERFDKFINPHHPLSDQTINLTSITDEMVGAADDEDVVIRQFKDFYGD 496

Query: 460 EHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
                 GHN+++D       L R G+    +   D + +S +L   ++ H + S+ +K+
Sbjct: 497 --MPLCGHNVQFDVGFVNAALRRAGLEEIKQPVVDTLEVSRLLHPEQTRHTLDSLVKKY 553


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 34/232 (14%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A ++K   I ++ +  KD         F D     S       
Sbjct: 405 LEDATYVVFDVETTGLSAVYNKI--IELAGVKIKDGEIIDRFEAFADPKHALSATTIELT 462

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR------YGISMRGFE 487
               D        + I      +  +   + + HN  +D   L        +        
Sbjct: 463 GITDDMVQGQPDPEVITKRFVDWCGD--SILVAHNASFDMGFLEATLRSGGHEPDDYPVI 520

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILKSRKSSIPIDKISDSQ------ 537
           D + ++  L     +H + ++A+++      + R        + + +  +  ++      
Sbjct: 521 DTLELARTLMPTLKNHRLNTLAKRFDIELTQHHRAIYDAEATAYLLMKLLDLAKQMFEMT 580

Query: 538 ----VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
               +      + + I      +  K     L H+YE +    ID + +M  
Sbjct: 581 THRSLNAKVGSDVSKIRPFHATIYAKNKKPGLRHLYELISLSHIDYLYRMAR 632


>gi|256810959|ref|YP_003128328.1| flap structure-specific endonuclease [Methanocaldococcus fervens
           AG86]
 gi|256794159|gb|ACV24828.1| flap structure-specific endonuclease [Methanocaldococcus fervens
           AG86]
          Length = 326

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 98/300 (32%), Gaps = 68/300 (22%)

Query: 10  VDGSSFIY------RAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +DG + +Y      R    +PL +RK  G   +A  G     +K +     +        
Sbjct: 26  IDGMNALYQFLTSIRLKDGSPLRNRK--GEITSAYNGVF---YKTIHLLENDITP---IW 77

Query: 64  IFD-------YPAVTFRNEIYPDY--KANRPKIPEMLLPQLPLVRL-------------- 100
           +FD            FR E+      K       E         +               
Sbjct: 78  VFDGEPPKLKEKTRKFRKEMKEKAELKMKEAIEKEDFEEAAKYAKRVSYLTPKIVENCKY 137

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
                GIP +E    E +   +         G    ++S D D +   +P      T  +
Sbjct: 138 LLSLMGIPYVEAPS-EGEAQASYMAKK----GDVWAVVSQDYDALLYGAPRVVRNLTTTK 192

Query: 161 ---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQEYGNLEN 216
              E I++  V++   I  + ++ +    G   D  P G+ GIG+K A  L++       
Sbjct: 193 EMPELIELNEVLEDLRISLDDLIDIAIFIG--TDYNPGGVKGIGFKRAYELVR------- 243

Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                S + ++  ++ +  Y E  R+ ++        P       L L+  N   +I FL
Sbjct: 244 -----SGVAKEVLKKEVENYEEIRRIFKE--------PKVTDNYSLSLKLPNKEGIIKFL 290


>gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 1435

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDSTGK 442
           E      F + T  + + +   I I    +   +  +   K       LS  T   ++  
Sbjct: 414 EDREFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSIT 473

Query: 443 NTLTKE------ILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
           + +         ++   + F+ +      GHN+++D       L R G+    +   D +
Sbjct: 474 DEMVSAADDEAVVIKQFQDFYGD--RPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTL 531

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 532 EVSRLLHPEQNRHTLDSLAKKY 553


>gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum]
          Length = 739

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 78/244 (31%), Gaps = 29/244 (11%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
              + +  + ++   + +   V  L T+   +  +   +   +      + IST      
Sbjct: 201 PASLEDTPFVEVYTEEQLNLMVSHLITVNELAIDLEAHSYRTYQGFTCLMQIST------ 254

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR- 478
                           + D        ++ L  L + F N   +K+ H    D   L R 
Sbjct: 255 ---------------RNADYIIDTLYLRDKLHVLNEIFTNPAVVKVFHGADSDIPWLQRD 299

Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            G+ +    D    + +L+   S   +  + + +      +  K+ +      +   ++ 
Sbjct: 300 LGLYVVNMFDTYQAAKILN--FSRKGLEFLLKHY---CNVDADKTFQLYDWRTRPLSTEA 354

Query: 539 QEHAIENSNVILQLWLLLRPKLIVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
             +A  +++ +L ++ +++  L+       +  E + +   DV        I  D   L 
Sbjct: 355 IFYARCDTHYLLYVYDMIKKDLMAMSTNQCNYIELVFQRSADVCKSRYEVNILRDDSHLS 414

Query: 597 QVSA 600
               
Sbjct: 415 MYKR 418


>gi|328865755|gb|EGG14141.1| hypothetical protein DFA_11908 [Dictyostelium fasciculatum]
          Length = 1098

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 29/195 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP------- 150
                  FGIP I     EA+   A    +   +G    +++ D D++   S        
Sbjct: 790 CHELLSMFGIPFITSP-TEAESQCAELYNLGFVDG----VVTDDSDILLFASQPDMAVYR 844

Query: 151 TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
               +D  K      + + +  G+  + ++ L  L G   D  PG+ GIG   A  +L E
Sbjct: 845 NLFQHDPQK---YQPKEIKRLMGLERQDLISLALLLG--CDYTPGVHGIGIVNAMEILAE 899

Query: 211 YGNLENILINASRIKQKK----------RRENILEYAETARLSRKLVMLRTDVPITIPLE 260
           + NL++     S +   K           ++N++    +   S ++V    +  +    E
Sbjct: 900 FENLQDFKKYISGLDGSKPTDHPNFMSLLKKNLV--LASTFPSDQVVQAFINPEVNSSKE 957

Query: 261 HLILEDCNGPRLISF 275
                  +   L   
Sbjct: 958 PFTWTHPDIESLRCL 972


>gi|255080460|ref|XP_002503810.1| predicted protein [Micromonas sp. RCC299]
 gi|226519077|gb|ACO65068.1| predicted protein [Micromonas sp. RCC299]
          Length = 503

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 16/162 (9%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSH-------D 504
           LK   E+   +K+  + + D   L H++G+S+    D+ L    + + R++H        
Sbjct: 304 LKSVLEDPKVVKLMFDCRVDSDALFHQHGVSLTNVFDVQLAD--VAARRANHHAVSLLSG 361

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +   A +WL     +   +  +  P      SDS     A   + V       L+ K+  
Sbjct: 362 MPKCAGRWLPKGPNQAEAALAAQGPDRAPIRSDSDAPPDAASVARVT----EHLKRKVKE 417

Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
           +   ++    +      +++       +D  LLK++ A +  
Sbjct: 418 QYASNLGGDGELWAKRPLAEDVRRYAALDAWLLKEIYAAMEH 459


>gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
 gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
          Length = 392

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 69/215 (32%), Gaps = 29/215 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   + +Q ++  +      +          ++ +   +  +TLDQ             
Sbjct: 6   LIETPEALQAFLDSIAGTDWIALDTEFLREKTYYPQLCLVQAATLDQ--------LACID 57

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
            L +                +  L   F +    K+ H    D  +L+R  G       D
Sbjct: 58  PLRLD---------------IQQLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVFD 102

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + + +L  G      A++ +  L    +++ KS+  +    +   ++   +A ++   
Sbjct: 103 TQIAASMLGYGEQV-GYANLVKTVL---ERDLDKSQTRTDWSRRPLSAEQIRYAADDVRH 158

Query: 549 ILQLWLLLRPKLIVEKLLHVYE-RLDKPMIDVVSQ 582
           +  L+  L  +L     +H     ++      + +
Sbjct: 159 LATLFNRLLHELDTHDRMHWLRPEMEALSNPALYE 193


>gi|261868337|ref|YP_003256259.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413669|gb|ACX83040.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 385

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 67/209 (32%), Gaps = 27/209 (12%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           N   ++ + +  ++ +  Q      + +       +   + K   I +   D+       
Sbjct: 10  NPPHFSVVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDRV------ 63

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
              +   L +                 S   K   + + +KI H    D  V   Y   +
Sbjct: 64  --ALIDPLPIQD--------------FSPFIKLLADTNLVKILHACSEDLDVFQHYFQQL 107

Query: 484 -RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
            R   D  +M++ L     S   A++ Q +      EI K    +  + +       ++A
Sbjct: 108 PRPMCDTQVMAHFL-GFAGSTGFATLVQHYFQI---EIDKGASRTDWLARPLSDTQLQYA 163

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYER 571
             +   +L L+  ++ +L   +   V E 
Sbjct: 164 AADVWYLLPLYEQMQQQLTQTEWQSVVEN 192


>gi|39975397|ref|XP_369089.1| hypothetical protein MGG_00155 [Magnaporthe oryzae 70-15]
 gi|145018994|gb|EDK03273.1| hypothetical protein MGG_00155 [Magnaporthe oryzae 70-15]
          Length = 1269

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K +R    E+    +   +   + FGIP +     EA+   A    +   +G    I++ 
Sbjct: 900  KKDRRDADEVSQVMVTECQQLLRLFGIPYVTAP-MEAEAQCAELVRLGLVDG----IVTD 954

Query: 141  DKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
            D D   L   T    +     K         + K+  +  E ++ L  L G   D   G+
Sbjct: 955  DSDTF-LFGGTRVYKNMFNGNKFVECYLASDLEKELSLSQENLISLAQLLG--SDYTDGL 1011

Query: 197  PGIGYKTAALLLQEYGNLENI 217
            PG+G  TA  +L E+   + +
Sbjct: 1012 PGVGPVTAVEILSEFPGPDGL 1032


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
          Length = 1424

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFID--LSVHTSQ 437
                  F + T  + + +   I I         +  + D       +  D  +++ +  
Sbjct: 403 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 462

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 520

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 521 EVSRLLHPEQTRHTLDSLAKKY 542


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
          Length = 1416

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFID--LSVHTSQ 437
                  F + T  + + +   I I         +  + D       +  D  +++ +  
Sbjct: 395 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 454

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 455 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 512

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 513 EVSRLLHPEQTRHTLDSLAKKY 534


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFID--LSVHTSQ 437
                  F + T  + + +   I I         +  + D       +  D  +++ +  
Sbjct: 403 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 462

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 520

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 521 EVSRLLHPEQTRHTLDSLAKKY 542


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners
           AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFID--LSVHTSQ 437
                  F + T  + + +   I I         +  + D       +  D  +++ +  
Sbjct: 399 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 458

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 459 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 516

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 517 EVSRLLHPEQTRHTLDSLAKKY 538


>gi|254419933|ref|ZP_05033657.1| ribonuclease D [Brevundimonas sp. BAL3]
 gi|196186110|gb|EDX81086.1| ribonuclease D [Brevundimonas sp. BAL3]
          Length = 383

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 68/218 (31%), Gaps = 28/218 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T I   + +  +  +L T    +          +  +   I  ++ D             
Sbjct: 2   TPITTNEALADFCARLATAPFITVDTEFMRETTYWPRLCLIQAASADHAGII-------- 53

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
                    D   +    +  L  L+    +   +K+ H  + D  +  R G   R   D
Sbjct: 54  ---------DPMAEGLDLEPFLDLLR----DPKIIKVFHACRQDVEIFVRLGAMPRPMFD 100

Query: 489 IMLMSYVLDSGRSSH-DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             + +  + +G        S+ ++ L   R E+ K  + +    +        +A+ +  
Sbjct: 101 TQVAA--MAAGFGEQVAYDSLVRQML---RVELDKGSRFTDWARRPLSDSQLVYALGDVT 155

Query: 548 VILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQME 584
            +  L+  LR +L  E  L  V   ++  +   +    
Sbjct: 156 HLAALYPKLRDRLKKEGRLDWVMSEMESLIDPALYDTN 193


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
          Length = 1424

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFIDLSVHTSQ-- 437
                  F + T  + + +   I I         +  + D       +  D +++ +   
Sbjct: 403 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 462

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 520

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 521 EVSRLLHPEQTRHTLDSLAKKY 542


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
          Length = 1420

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFIDLSVHTSQ-- 437
                  F + T  + + +   I I         +  + D       +  D +++ +   
Sbjct: 399 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 458

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 459 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 516

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 517 EVSRLLHPEQTRHTLDSLAKKY 538


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
          Length = 1420

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFIDLSVHTSQ-- 437
                  F + T  + + +   I I         +  + D       +  D +++ +   
Sbjct: 399 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 458

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 459 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 516

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 517 EVSRLLHPEQTRHTLDSLAKKY 538


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
          Length = 1438

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS--------- 432
           + L+      F + T  +   + K I +A +      +   K E                
Sbjct: 415 RDLKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHEKLSETIINL 473

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGF 486
            H + D        +++L+  K++  +   + + HN  +D         R G      G 
Sbjct: 474 THITDDMLTDAPEIEDVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGV 531

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  +++    H +  +A+K+
Sbjct: 532 IDTLELSRTINTDYGKHGLNFLAKKY 557


>gi|321465482|gb|EFX76483.1| hypothetical protein DAPPUDRAFT_226045 [Daphnia pulex]
          Length = 544

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 119/365 (32%), Gaps = 51/365 (13%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           + +     P+++     +  T+  +  ++ L +       +                   
Sbjct: 83  KHEVPHFQPVSSTPLIMVDTTEAFEHLLRDLLSQTVIGVDLE------------------ 124

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                D S++  T  + +S   +        L    L  L K F + + +KI      D 
Sbjct: 125 --HHSDRSYRGITCLMQISTDKTDYIIDTLQLWDH-LQPLNKVFCDPNIVKIFQGADSDV 181

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           + L R +GI +    D +  + +L  G     +  + Q +       + K  + +    +
Sbjct: 182 IWLQRDFGIYVVNLFDTLQAASLL--GFQKKGLYFLLQHYCQVH---VNKKYQLADWRIR 236

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE--------RLDKPMIDVVSQME 584
               ++ ++A E+++ ++ ++  ++  L     L   +          ++P         
Sbjct: 237 PLPQEMVKYAREDTHYLIYIYERMKQDLYSRHCLGDVKITPEMKKGTPEEPKDRKSKSKS 296

Query: 585 ITGIQIDQD---------------LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629
                +++                 LKQ   +  + + S   +  +  G+KFN      L
Sbjct: 297 SQITPVNEKGVNQVLQVWNNSRSVCLKQYRIQTLEEMYSKFYSSLNKEGKKFNNQQSYAL 356

Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689
            +I F+     +    ++  +  T  ++  I    +   +NIL+     +    +   L 
Sbjct: 357 QEI-FSWRDRVARELDESPHYVMTKFNMLNIISQLHNQPENILQPISRHRFVHQHLPQLH 415

Query: 690 NHINK 694
             I K
Sbjct: 416 EVIVK 420


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
          Length = 1424

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFID--LSVHTSQ 437
                  F + T  + + +   I I         +  + D       +  D  +++ +  
Sbjct: 403 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 462

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 520

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 521 EVSRLLHPEQTRHTLDSLAKKY 542


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 1424

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFIDLSVHTSQ-- 437
                  F + T  + + +   I I         +  + D       +  D +++ +   
Sbjct: 403 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 462

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 520

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 521 EVSRLLHPEQTRHTLDSLAKKY 542


>gi|238579680|ref|XP_002389137.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
 gi|215451076|gb|EEB90067.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
          Length = 391

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 34/204 (16%)

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
           +  + FGIP I     EA+   A    +   +G    II+ D D+          Y  + 
Sbjct: 1   MMLRLFGIPYITAP-MEAEAQCAVLVSLGLVDG----IITDDSDVFVFGGQRV--YKNMF 53

Query: 160 EEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            +   +E      + ++ G+    ++ L  L G   D + G+PG+G   A  LL+E+   
Sbjct: 54  NQSKTVECFLLSDLSRELGLDQGTLIRLAYLLG--SDYVEGLPGVGPVVAMELLKEFPGE 111

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH------------- 261
           + +        + +   +  ++       + L        + +P E              
Sbjct: 112 DGLHKFKDWWTKVQTGRDKEDHIAWLWTHKYLSSEDKTKDLYLPPEWPNSAVRDAYYHPT 171

Query: 262 -------LILEDCNGPRLISFLKA 278
                        +   L  FL+ 
Sbjct: 172 VDESDEPFKWGLPDLDALREFLRE 195


>gi|330926290|ref|XP_003301407.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
 gi|311323973|gb|EFQ90519.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
          Length = 796

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 72/210 (34%), Gaps = 26/210 (12%)

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
            E  +     P N+ + T +   + +   + +L+T    +  +                 
Sbjct: 199 YETAEPQQYAPFNSTTATLVDTPEALAAMLAELKTAKEIAIDLE---------------- 242

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                 D+ ++      + +S              +  L  L + F +   LK+ H    
Sbjct: 243 ----HHDNRTYIGMVCLMQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAFM 298

Query: 472 DKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
           D + L R  G+ + G  D    +  L      +  AS+A     +   +  K  + +   
Sbjct: 299 DIIWLQRDLGLYIVGLFDTFHAARAL-----GYQAASLAYLLELHVNFKAQKQYQLADWR 353

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +    ++ E+A  +++ +L ++  +R +L
Sbjct: 354 QRPLSKELFEYARADTHFLLYIFDNMRNEL 383


>gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG]
 gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG]
          Length = 401

 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 27/217 (12%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P   F  +   + +   N   +  + +   + +     +   + +       +  +  K 
Sbjct: 9   PFLFFSNKKITMIKECQNPPHFRVVTDNTALLEVCNLAQQKSAVALDTEFMRVSTYFPKL 68

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             I +   ++         T F                              N   LKI 
Sbjct: 69  GLIQLYDGERVSLIDPLAITDFSP----------------------FVALLANPKVLKIL 106

Query: 467 HNIKYDKLV-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H+   D LV L  +    R   D  +M+  L  G S+  +A +AQ++L+    EI K   
Sbjct: 107 HSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNI---EIDKGAT 162

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +  I +       ++A  +   +L L+ +L  +L  
Sbjct: 163 LTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199


>gi|68171372|ref|ZP_00544766.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657845|ref|YP_507797.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67772422|gb|AAY79412.1| ribonuclease D [Ehrlichia chaffeensis]
 gi|67999197|gb|EAM85853.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599302|gb|ABD44771.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 204

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 58/186 (31%), Gaps = 25/186 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L+   + +    T  +     K   + +   + +         +   L  + + +     
Sbjct: 14  LKFENTVAVDTETMGLVCRRDKLCVVQLCDSNGE-------THLVKFLGSYQAPN----- 61

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSS 502
                    L     +    KI H  ++D  V+  Y G+         + S ++ +    
Sbjct: 62  ---------LVSVLSDSSITKIFHFARFDIAVIRYYLGVWATPCYCTKIASKLVRTYTDH 112

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           H +  +  + L+     + K ++SS    +   S+   +A  +   +  L   L   L  
Sbjct: 113 HGLKELCYELLNVK---LNKMQQSSDWGKETLTSEQLNYAASDVIYLHALKNKLDAMLQR 169

Query: 563 EKLLHV 568
           E    +
Sbjct: 170 ENKQEL 175


>gi|240849913|ref|YP_002971302.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
 gi|240267036|gb|ACS50624.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
          Length = 206

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 24/172 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
              + +    T  +     +   + +S+ D   D                 Q S G+ + 
Sbjct: 18  KTDAIAIDTETLGLQPHRDRLCVVQLSSGDGTADV---------------IQISKGQKSA 62

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L K   +   +KI H  ++D  +L   +G+         + S +  +    H 
Sbjct: 63  PN-----LVKLLGDNAVIKIFHFGRFDLAILAHTFGVMPEAIFCTKIASKLTRTYTDRHG 117

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           +  I  + L+     I K ++SS    +       E+A  +   + +L ++ 
Sbjct: 118 LKEICNELLNVN---ISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKVIF 166


>gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana]
          Length = 237

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 79/239 (33%), Gaps = 33/239 (13%)

Query: 331 FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS------YTKIVNTKDIQQWVQKL 384
           F + +++ S  +  +T   + LE  Q    +     S      Y  +     +++  + L
Sbjct: 12  FETNAEKPSNGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYVWVETESQLKELAEIL 71

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
                 +      ++ +F      I IST +                     +D      
Sbjct: 72  AKEQVFAVDTEQHSLRSFLGFTALIQISTHE---------------------EDFLVDTI 110

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSH 503
              +++S L+  F + +  K+ H    D + L R + I +    D      VL   +   
Sbjct: 111 ALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVL--SKPQR 168

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +A + +        ++L   +      +    ++  +A  +++ +L +   L  +L  
Sbjct: 169 SLAYLLETVCGVATNKLL---QREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQ 224


>gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus]
          Length = 497

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/349 (10%), Positives = 109/349 (31%), Gaps = 44/349 (12%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P+ L     E      E   
Sbjct: 175 LHAKNIVRPQLR--FREKIDNSNTPFLPKIFVKPNARKPLPLALSKERRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L+R +      +       + 
Sbjct: 233 VPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPQSVLQRPKPQLYRAVGETPCHLVS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLGCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+   + H +  + + +       +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LARHSLDHLLRLYCG-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLWLLLRPKLIVEKLLHV--YERLDKPMIDVVSQMEITGIQIDQDLLK 596
           L ++  +R +L           + + +   D+  +  +  I  D+  L+
Sbjct: 445 LYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLE 493


>gi|254780636|ref|YP_003065049.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040313|gb|ACT57109.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
          Length = 207

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 65/180 (36%), Gaps = 26/180 (14%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
              + + +    T  +     +   + +S  D        V+ I I      + +  G  
Sbjct: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT------VDIIRIAAGQKNAPNLVG-- 68

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSS 502
                          +E   KI H  ++D  VL + +G+ +R      + S +  +  + 
Sbjct: 69  ------------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116

Query: 503 HDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           H +    ++ L      I K+++SS    D +SD Q+ ++A  +   +  L L    KL 
Sbjct: 117 HGLKDNLKELLGIN---ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQ 172


>gi|193083976|gb|ACF09651.1| XPG I flap structure-specific endonuclease [uncultured marine
           crenarchaeote AD1000-56-E4]
 gi|193084049|gb|ACF09722.1| XPG I flap structure-specific endonuclease [uncultured marine
           crenarchaeote KM3-86-C1]
          Length = 341

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 102/285 (35%), Gaps = 75/285 (26%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLP------------VNAIAGFCNMLWKLLQNSR 53
            +  +D  + IY+ F A     R  DGL                +    N L   ++   
Sbjct: 22  KIIAIDAYNAIYQ-FLAI---IRGPDGLHLTDSKGRVTSHLTGLLYRNVNFLSMGIK--- 74

Query: 54  KESIASHFAVIFDYPAVT------FRNEI--------YPDYKAN------RPKIPEMLLP 93
                 +   +FD    +       R ++        Y   KA+      R    +    
Sbjct: 75  ----PVY---VFDGKPPSLKTAEIERRKLGKKEATIKYEKAKASGDLESARKYAQQTTSM 127

Query: 94  QLPLV---RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM----- 145
           Q  +V   +     FGIP ++ +     D  AT  Y+  K G A  + S D D +     
Sbjct: 128 QDTMVEDSKHFLDLFGIPYVQAKA----DGEATAAYM-NKNGMADAVASQDFDSILFGAV 182

Query: 146 QLVSPTT---CLYDTVKEEKIDIEHVIKKW-------GIPPEKMVCLQALTGDSIDNIP- 194
           +L+   T         +   IDIE  I  +       GI  E+++ +  L G   D  P 
Sbjct: 183 KLIRNFTNSGRRKLPNRNTYIDIEPEIISYQKSLDALGITGEQIIDIGILIG--TDFNPD 240

Query: 195 GIPGIGYKTAALLLQEYGNLENIL---INASRIKQKKRRENILEY 236
           G   IG KTA  +++EYG LE+I        ++  K+ R+  L+ 
Sbjct: 241 GFERIGPKTALKMIKEYGKLEDIPKIQEELEQVDYKQIRKIFLQA 285


>gi|319775680|ref|YP_004138168.1| ribonuclease D [Haemophilus influenzae F3047]
 gi|317450271|emb|CBY86487.1| ribonuclease D [Haemophilus influenzae F3047]
          Length = 380

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +V T F  L +    D    + +    ++    F     N   LK+ H+   D L
Sbjct: 36  DTEFMRVSTYFPKLGLIQLYDGERVSLIDPLAITDFSPFVALLSNPKVLKVLHSCSEDLL 95

Query: 475 V-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V L  +    R   D  +M+  L  G S+  +A +AQ++L+    EI K    +  I + 
Sbjct: 96  VFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNI---EIDKGATRTNWIKRP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                 ++A  +   +L L+ +L  +L  
Sbjct: 152 LSDIQLQYAAGDVWYLLPLYHILEKELAK 180


>gi|71029044|ref|XP_764165.1| DNA repair protein Rad2 [Theileria parva strain Muguga]
 gi|68351119|gb|EAN31882.1| DNA repair protein rad2, putative [Theileria parva]
          Length = 835

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 28/207 (13%)

Query: 93  PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT- 151
           P    V    + FG+P I     EA+   A         G    +IS D D +   +   
Sbjct: 526 PYYDDVHKLLEHFGVPYIVAPS-EAESQCAYMNR----SGKCYAVISDDSDSLVFGAKCL 580

Query: 152 -TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
               Y+    E   ++ + ++ GI  +++  +  + G   D   G+ GIG   A  +++ 
Sbjct: 581 LKNFYNDKVFELYTLDRIRRELGIGRKQLALIAIICG--CDYTTGVKGIGIVNALEVIKA 638

Query: 211 YGNLENILI------NASRIKQKKRRE-NILEYAETARLSRKLV-MLRTDVP-------- 254
           Y   +++        N   +K     E  I +  + A ++ ++      D P        
Sbjct: 639 YPTFDDLYDFRDWATNDCNLKSAVADECPIRKSYKIAHINYRVNWTFSPDFPNREAYNMF 698

Query: 255 ITIPLEH---LILEDCNGPRLISFLKA 278
           +   +     L         L SF+  
Sbjct: 699 LNPSVTDNYKLQWSQPKMESLTSFMDR 725


>gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 721

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 40/258 (15%)

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
            TP+    +  +   +       +             +KL  +    F   T  ++  + 
Sbjct: 487 ATPELEQDQEERTRGKGRPEYYDFDLFKFEDKSIDLDRKLSDLTYTVFDTETTGLEPSNG 546

Query: 405 -KPIAIAIS-----------TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            + I I  +           T +Q  D    ++   I +    ++D          +L  
Sbjct: 547 DEIIQIGAARIVNNRLLRQETFNQIVDPEIPLKPASIPI-HGITEDMVRGQPNIDVVLPA 605

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLH----RYGISM-RGFEDIMLMSYVLDSGRSSHDIAS 507
             +F E+   + I HN  +D   L     R  I   +   D +L+S V+   + SH +  
Sbjct: 606 FHEFCED--TVLIAHNAAFDMRFLQLKEERTNIRFTQPVLDTLLLSAVVHPNQESHKLDV 663

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           I ++                I I K      + +A+E++    +++L L   L  + ++ 
Sbjct: 664 ILERL--------------GITIGK------RHNALEDALATGEVFLKLVKLLEDQGIVT 703

Query: 568 VYERLDKPMIDVVSQMEI 585
           V + L+       ++++ 
Sbjct: 704 VRQALEAAEKTYFARVKY 721


>gi|312078568|ref|XP_003141795.1| hypothetical protein LOAG_06211 [Loa loa]
 gi|307763041|gb|EFO22275.1| hypothetical protein LOAG_06211 [Loa loa]
          Length = 1064

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 87/264 (32%), Gaps = 42/264 (15%)

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           L  +++NI +  G+     S   +    F KL  P+G     G   + A  LE       
Sbjct: 522 LSVIQQNIAEGIGDVVLTHSHSSISIFGFHKLPHPNGEHDNVGDPISKAFRLEIEEGVLR 581

Query: 666 PIIKNILEWRQLSKIKST------YADSLPNHI------NKRTQRVHTFYSLASTMTGRL 713
           P+ +   E+  L + ++T      Y D     +      N     +      A T+T R 
Sbjct: 582 PM-RYKKEFLDLYRARNTTRFWNNYRDRFQEQVTVWFDENGDEGAIAPSIIPAGTVTRR- 639

Query: 714 ASLEPNLQNIPIKTD--LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT------ 765
           A  +  L  I  K D  +G  ++     P    ++ AD    E  I A +          
Sbjct: 640 AVHKLWLTAINAKDDQMIGTNLKSMVECPQDWHIVGADVDSQEQWIAAMLGDCCVGRGIA 699

Query: 766 ------PLYQVFE--NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS---P 814
                  +       ++ D+H +VA E+            R  AK +N++ +YG      
Sbjct: 700 GATPFSNMLLAGRKADNSDLHSVVAKEV---------GISRDKAKVLNYARLYGSGVAHA 750

Query: 815 FRLATQLRIPRSEAADYIKRYFHR 838
                Q  +    A     + F  
Sbjct: 751 AEFLMQSGMNSERALSVSNKLFAT 774



 Score = 41.2 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936
             R+ IN  +Q SA D     ++ +    E +++  +  L IHDE+ + VP E+
Sbjct: 924 YRRSIINWVVQSSAVDFLHLLIVCMKWLCEIYQIEARFALSIHDEIRYIVPAED 977


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 111/341 (32%), Gaps = 65/341 (19%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           LE      F + T  + A ++  I + A+   D +    F+        LS         
Sbjct: 420 LEEDTYVVFDVETTGLSAMYNTIIELAAVKIRDGEIIDRFESFANPHHPLSATTINLTGI 479

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-------D 488
           + D         E L   K +  +   + + HN  +D   L   G    G +       D
Sbjct: 480 TDDMVEGAPEVAEALKAFKDWAGDA--VLVAHNASFDMGFL-NVGYGKAGLDKAENPVID 536

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILKSRKSSIPIDKISD--------- 535
            + ++ +L     +H + ++A+K+      + R          + +  + D         
Sbjct: 537 TLELARLLYPEMKNHRLNTLAKKFDVELTQHHRAIYDAEATGYLLLKMLKDANEKGIIYH 596

Query: 536 SQVQEHAIE-NSNVILQL-WLLLRPKLIVEKLLHVYERLDKPMIDV----------VSQM 583
            Q  ++  + ++    +   + L  +   E L ++++ +    ++           + Q 
Sbjct: 597 DQFNDYMGKGDAYKRSRPSHVTLLAQ-TEEGLKNLFKLVTISHLEYFFRVPRIPRSLLQK 655

Query: 584 EITGIQI----DQ-DLLKQVSAEISKNLLSLE----------ENIYDLSGEKFNLSSPKQ 628
             +GI +    D+ ++ + +  +  + +              + +Y    E   + S + 
Sbjct: 656 YRSGILVGSGCDKGEVFEGMMQKAPEEVEEAARFYDYLEVHPKEVYQHLIELELIQSDQN 715

Query: 629 LGDI------LFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
           L +I      L  KL  P  A         T +   +I  G
Sbjct: 716 LEEIIGNIVQLGEKLDLPVVATGNVHYINPTDKVHREILVG 756


>gi|49473901|ref|YP_031943.1| ribonuclease d [Bartonella quintana str. Toulouse]
 gi|49239404|emb|CAF25742.1| Ribonuclease d [Bartonella quintana str. Toulouse]
          Length = 206

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 59/172 (34%), Gaps = 24/172 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
            I + +    T  +     +   + +S+ D   D                 Q + G+ + 
Sbjct: 18  QIDAVAVDTETLGLQPHRDRLCVVQLSSGDGTAD---------------IIQIAKGQKSA 62

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHD 504
                  L K  +++   KI H  ++D  +L   +G+         + S +  +    H 
Sbjct: 63  PN-----LVKLLKDKAITKIFHFGRFDLAILAYTFGVMPDVVFCTKIASKLTRTYTDRHG 117

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           +  I  + L+     I K ++SS    +I      E+A  +   + +L  + 
Sbjct: 118 LKEICCELLNVN---ISKQQQSSDWAAEILSRAQIEYAASDVLYLHRLRDIF 166


>gi|115396098|ref|XP_001213688.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193257|gb|EAU34957.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 761

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 94/252 (37%), Gaps = 32/252 (12%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
           ++I + + P   ++E        P  + + T +   + +++ + +L+     +  +    
Sbjct: 197 AEIRAAKYPDPTYVESPPVD-YLPFESTTATFVDTVEGVKEMLGELKAAKEIAIDLE--- 252

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
                              D  S+      + +S              +E L  L + F 
Sbjct: 253 -----------------HHDVHSYHGLVSLMQISTREKDWVVDTLKPWREELQMLNEVFT 295

Query: 459 NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT 516
           +   LK+ H    D + L R  G+ + G  D    +  L+   RS   +  + QK++++ 
Sbjct: 296 DPSILKVLHGSSMDIIWLQRDLGLYIVGMFDTYHAACALNYPKRS---LKYLLQKFVNF- 351

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH---VYERLD 573
             E  K  + +    +   S + ++A  +++ +L ++  LR +LI     +   +   L+
Sbjct: 352 --EADKRYQMADWRIRPLPSGMFDYARSDTHYLLHIYDHLRNELIRNSTSNNNLIDYVLE 409

Query: 574 KPMIDVVSQMEI 585
           +   + + + E 
Sbjct: 410 RSKTEALQRYER 421


>gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 743

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 66/401 (16%), Positives = 137/401 (34%), Gaps = 66/401 (16%)

Query: 213 NLENILINASRIKQKKRRENILEYAETARLS---RKLVMLRTDVPITIP---------LE 260
            L  ++   +R+  K+RR ++   A+    S     L   RT V   +          L+
Sbjct: 58  TLIALMDACTRMLPKRRRTSLSAEAD--PRSGAFHLLETERTTVMEAVDSLLESVDSLLD 115

Query: 261 HLILEDCNGPRLIS--FLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET 318
            +     +    +S  F   LE ++  NR       +AA+    VL +       +   T
Sbjct: 116 EVKGRRLDAQEQLSVTFGSELEVSQ--NREGGVVVAEAASARAGVLRLAHIRRPQLLFGT 173

Query: 319 EIDRDTTIKTSQFSSLSDQ-----------TSKINSEQTPQKLFLERLQKLSQYPINNDS 367
            +D        ++   S Q            S I +   P+   L R +     P++   
Sbjct: 174 PVDNSAAPFVPRYYDASGQYHVGVAGQHPFESVIKTFSVPESQMLPRAEV-PPVPLDACP 232

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
            T +  T  +Q  V KL      +  +                       D  S++  T 
Sbjct: 233 LTFVDTTAAMQAMVAKLLLSSEIAVDLE--------------------HHDFYSYQGFTC 272

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGF 486
            + +S    +D        +  +  L   F N   LK+ H  + D   L + + + +  F
Sbjct: 273 LMQIST-REEDFIVDCLKLRSSMGALAPVFLNPSILKVFHGAREDIRWLQKDFSLYVVNF 331

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  +    L      H   S+A     + + ++ K  +++    +   +++  +A +++
Sbjct: 332 FDTGVALQTL------HMPYSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDT 385

Query: 547 NVILQLWLLLRPKLIVEK--------LLHVYERLDKPMIDV 579
           + +L +   L+  L+  +        L+HVY    +  + +
Sbjct: 386 HFLLYVHDRLKALLLNSEGRASIGSLLVHVYNESKQLSLQI 426


>gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
          Length = 386

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 122/339 (35%), Gaps = 57/339 (16%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LS L++ F++E   K+ H+ + D   L  R+    R   D    S + +   +S   + +
Sbjct: 68  LSPLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKL 127

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            +++L     ++L  R        +S+ +V  +A+++   + +L+ +L   L  +  L  
Sbjct: 128 VEQFLGVKLNKLLFKRV-DWSHRPLSEGKV-RYALDDVTYLHELYEVLLGILTAKGRLTW 185

Query: 569 YERLDKPMIDVVSQME---ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL-- 623
           +    + + +         + G+    + L +  A I+++++   E +  L     N+  
Sbjct: 186 FLEEMENIAEAFVDNYDSLLEGMDFFPE-LGESEAIIARSIIEWREKVARLFNVNRNIVM 244

Query: 624 ------------------------SSPKQLGDILFTKLK-FPSGAKTKTGQWKTTAQDLE 658
                                    S   LG++ F+      S A  K G +K   +D  
Sbjct: 245 HSKSVLLATKDFLRSRDEEVLYRYVSGSYLGNLPFSLCDILESSAGRKLGVYKLVDRDKP 304

Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718
            ++     +     E     K+ ++  + L   INK    +   +               
Sbjct: 305 MLSALLILLNSMCREHGISQKLVASKVE-LVKLINKIHSNIMHGW--------------- 348

Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                  + +   +    FI+  T+ + S D S  ++R+
Sbjct: 349 -------RYEFFGRKVEKFIAGETRLIFSVDNSGGQMRL 380


>gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7]
 gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7]
          Length = 393

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 64/212 (30%), Gaps = 31/212 (14%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH--SKPIAIAISTLDQKDDT 420
           +       I +   + Q  ++  T    +       +D F+  +  + +           
Sbjct: 20  VTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVG---------- 69

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY- 479
                           ++      L ++      +  E+   +K+ H    D  V  R  
Sbjct: 70  -------------DGRREWLIDPLLVRD-WGPFAELLEDPRVVKVLHACSEDLEVFLRLT 115

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G       D  L +  L     S   + + ++ L     ++ K    S  + +       
Sbjct: 116 GSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDI---DLPKDETRSDWLQRPLTEMQM 171

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +A ++   + Q++L L  +L  EK   + E 
Sbjct: 172 RYAADDVQHLAQVYLALDARLSEEKRAWLLED 203


>gi|302808411|ref|XP_002985900.1| hypothetical protein SELMODRAFT_424803 [Selaginella moellendorffii]
 gi|300146407|gb|EFJ13077.1| hypothetical protein SELMODRAFT_424803 [Selaginella moellendorffii]
          Length = 151

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETARLSRKL 246
           + D +PG+PG    TA  L++++G+LEN++       + +   ++ + E++     + ++
Sbjct: 40  AADGVPGVPGF---TALKLMRKHGSLENLVSAAAIRTVVKPYMQDALKEHSVLLEKNLEV 96

Query: 247 VMLRTDVPITIPLEHL 262
           + LR D+ + +PLE  
Sbjct: 97  LSLRRDIDVELPLEWC 112


>gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 695

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 66/220 (30%), Gaps = 41/220 (18%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAIS-------TLDQKDDTSFKVETIFIDLSVH 434
            +LE +    F   T  +     + + IA            +  DT           S  
Sbjct: 489 ARLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVFDTLVNPRRPIPPSSTE 548

Query: 435 TSQDSTGKNTLTKEILSYLKKF--FENEHFLKIGHNIKYDKLVLHRYGISM-----RGFE 487
               +        ++    ++F  F     L + HN  +D   L R  + +         
Sbjct: 549 VHGITDAMVADAPDMTEVGRQFHKFAEGAVL-VAHNAPFDMEFLRRAELLIDRRFDNPIL 607

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D +L+S VL      H + ++A + L  T  E                 + +  AI ++ 
Sbjct: 608 DTVLLSAVLFGQTEVHSLDALAHR-LGITIPE-----------------EARHTAIGDTV 649

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
                +L L P L             +    V+S++   G
Sbjct: 650 ATADAFLKLLPMLQGRG--------FETFGAVLSEVRRHG 681


>gi|226945355|ref|YP_002800428.1| ribonuclease D protein [Azotobacter vinelandii DJ]
 gi|226720282|gb|ACO79453.1| ribonuclease D protein [Azotobacter vinelandii DJ]
          Length = 375

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L    E+   +K+ H    D  VL R  G       D  L +  L+ G S    + + Q 
Sbjct: 68  LAALLEDPAVVKVLHACSEDLEVLLRLTGSLPLPLFDTQLAAAYLNLGFSM-GYSRLVQA 126

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            L     E+ K    S  + +        +A E++  + +L++ L  +L  +K     E 
Sbjct: 127 VLGI---ELPKGETRSDWLQRPLSELQIRYAAEDAVHLAELYVALGARLAEDKRAWTLED 183


>gi|27476027|ref|NP_775229.1| exonuclease [Pseudomonas phage PaP3]
 gi|27414457|gb|AAL85543.1| exonuclease [Pseudomonas phage PaP3]
          Length = 294

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 73/206 (35%), Gaps = 33/206 (16%)

Query: 67  YPAVTFRNEI--YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
                FR E+     YK  R    +    Q    RL        A+ + G EADD +   
Sbjct: 63  TGKDNFRLELATIRKYKGTRVGNTKPHHWQTVSDRL---KGKWGAVTVNGIEADDWLG-- 117

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---------DTVKEEKID-IEHVIKKWGI 174
                +EG   T  S DKD+ Q+       +            + E +  +    + +G 
Sbjct: 118 -VRGTEEGDNFTACSRDKDIRQITECHHYSWACGDKQPELGPFRNEGLGRVSASWRLYGK 176

Query: 175 PPEK-----------MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS- 222
              +            +  Q L GDS+DNIPG P IG K+AA LL      +++    + 
Sbjct: 177 KKPQKSWKLEGYGTAFLYGQLLVGDSVDNIPGCPEIGPKSAADLLGHLTTEKDLFKACAY 236

Query: 223 ---RIKQKKRRENILEYAETARLSRK 245
              ++     +E + E      L R 
Sbjct: 237 EYQKVYGDSWKEYLTENFRLLYLIRD 262


>gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica]
 gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica]
          Length = 738

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 78/212 (36%), Gaps = 35/212 (16%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            D Y  +   + ++  V  L+T    +  +   +M  ++     + +S+ +Q        
Sbjct: 218 EDEYIYVDTEEKLRDMVDHLKTQEEIAIDVEHHSMRTYYGITCLVQVSSREQDYII---- 273

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM 483
                             +T+    L    +   +   +K+ H    D   L R +G+ +
Sbjct: 274 ------------------DTIALRNLEIFNEVLTDPKIVKVLHGATMDIQWLQRDFGLYI 315

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP---IDKISDSQVQE 540
               D    +  L  G   H +A + Q + ++       S+K  +    I  +S  Q+  
Sbjct: 316 VSLFDTFHAAQAL--GLKGHSLAFLLQHYANFVT-----SKKYQLSDWRIRPMSPEQLL- 367

Query: 541 HAIENSNVILQLWLLLRPKL-IVEKLLHVYER 571
           +A  +++ +L ++  L+  L   +K+  V E+
Sbjct: 368 YARADTHFLLNIYDQLKNALVQKDKIEGVLEK 399


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
          Length = 1424

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFID--LSVHTSQ 437
                  F + T  + + +   I I         +  + D       +  D  +++ +  
Sbjct: 403 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 462

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   + F+++      GHN+++D   L+         I  +   D +
Sbjct: 463 DEMVQNADDENIVIRQFQDFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 520

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 521 EVSRLLHPEQTRHTLDSLAKKY 542


>gi|145640347|ref|ZP_01795931.1| ribonuclease D [Haemophilus influenzae R3021]
 gi|145274933|gb|EDK14795.1| ribonuclease D [Haemophilus influenzae 22.4-21]
          Length = 380

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N   +  I +   + +     +   + +       +  +  K   I +   ++     
Sbjct: 5   CQNPPHFRVIADNATLLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLID 64

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYG 480
               T F                              N   LKI H+   D LV L  + 
Sbjct: 65  PLAITDFSPFIA----------------------LLANPKVLKILHSCSEDLLVFLQEFD 102

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              R   D  +M+  +  G S+  +A +AQ++L+    EI K    +  I +       +
Sbjct: 103 QLPRPMIDTQIMARFIGLGASA-GLAKLAQQYLNV---EIDKGATRTNWIKRPLSDIQLQ 158

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L L+ +L  +L  
Sbjct: 159 YAAGDVWYLLPLYHILEKELAK 180


>gi|194222031|ref|XP_001494708.2| PREDICTED: similar to DNA-repair protein complementing XP-G cells
            [Equus caballus]
          Length = 1761

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 26/201 (12%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 1349 QELLRLFGIPYIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 1403

Query: 159  KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
            K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 1404 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 1461

Query: 214  LENILINASRIKQKKRRENILEYAETARLSRKLVMLR----------TDVPITIPLEH-- 261
            LE +L  +    + ++ + I       ++ +KL  L+           D  +   ++   
Sbjct: 1462 LEPLLKFSEWWNEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVVDDSK 1521

Query: 262  --LILEDCNGPRLISFLKALE 280
               +    +  ++  F +   
Sbjct: 1522 GSFLWGKPDLDKIREFCQRYF 1542


>gi|212711905|ref|ZP_03320033.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM
           30120]
 gi|212685427|gb|EEB44955.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM
           30120]
          Length = 373

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 32/222 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +    ++ +  Q+       +          ++ +   + +    Q       + T
Sbjct: 2   NYRLVTTDSELAKVCQEASDAPWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPLLMT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            F                         K    N + LK  H    D  V    +G     
Sbjct: 62  DFSP----------------------FKALLTNPNQLKFLHAGSEDLEVFMHDFGCVPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L +++      S   A++  + L     E+ KS   +  + +    +  ++A  
Sbjct: 100 MIDTQVLAAFLGYPI--SCGFATLVAEHLGI---ELDKSESRTDWLARPLSEKQCDYATA 154

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +   +L L  +L  K+  E LL   +        +V++ + T
Sbjct: 155 DVLYLLPLAKILMEKVSEEGLLADAQD---ECQRIVARRQKT 193


>gi|322708171|gb|EFY99748.1| exosome complex exonuclease Rrp6, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 830

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 80/223 (35%), Gaps = 13/223 (5%)

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
             P +    + +   +  I+   Y + V  K      Q +++  +         ++    
Sbjct: 179 TAPGEDGTAQYKHPYETEISTMKYPEWVFQKHDPIPSQPIDSTKATWVDTYEGVLEMLEE 238

Query: 405 KPIAIAIST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
              A  I+  L+  D  ++      + +S              +  L  L   F +   +
Sbjct: 239 LRKAKEIAVDLEHHDFRTYTGLVCLMQVSTRDRDWIVDTLQPWRHKLEVLNDVFADPSVV 298

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEIL 521
           K+ H    D + L R  G+ + G  D      +L+  GRS   +A +  K++ +      
Sbjct: 299 KVFHGAYMDMVWLQRDLGLYVNGLFDTYFACNLLNYPGRS---LAFLLSKFVGFDAD--- 352

Query: 522 KSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             ++  +   +I      +  +A  +++ +L ++  +R +LI 
Sbjct: 353 --KQYQLADWRIRPIPEDMLYYARSDTHYLLYIYDNVRNELIE 393


>gi|68067898|ref|XP_675876.1| DNA binding protein [Plasmodium berghei strain ANKA]
 gi|56495304|emb|CAH94067.1| DNA binding protein, putative [Plasmodium berghei]
          Length = 392

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 89/214 (41%), Gaps = 21/214 (9%)

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           K   EN   +K+ H+IK D+ +L    I +    D  L +Y +D+      + ++ + +L
Sbjct: 119 KTILENNKIIKVCHDIKNDQDMLLSKNIEINNVFD--LYNYSIDNYIYPPSLQNLVKTYL 176

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
              +K + K  + S  + K  + +   +A  +S    ++++ L  K   ++   +    +
Sbjct: 177 ---KKHLDKEYRLSNWLCKNLNEKQIIYAANDSYASREVYIALEKKNKNDQTFFINLNNE 233

Query: 574 KPMIDVVSQMEITGIQIDQDLL--KQVSAEISKNLLSLEENI-YDLSGEK----FNLSSP 626
              +           ++++  L   +   ++      ++ +I +++  +K    FN SS 
Sbjct: 234 NDYVKHS--------EVNKKCLGGNREYEKLPSKNRIVQNDINHEMLNDKNNAIFNKSSQ 285

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            +     F +L+     KTK  +++   +D   I
Sbjct: 286 NEKAS-QFLQLEKTFDDKTKKERYEYIEKDKLYI 318


>gi|289192094|ref|YP_003458035.1| flap structure-specific endonuclease [Methanocaldococcus sp.
           FS406-22]
 gi|288938544|gb|ADC69299.1| flap structure-specific endonuclease [Methanocaldococcus sp.
           FS406-22]
          Length = 326

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 106/333 (31%), Gaps = 71/333 (21%)

Query: 10  VDGSSFIY------RAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +DG + +Y      R    +PL +RK  G   +A  G     +K +     +        
Sbjct: 26  IDGMNALYQFLTSIRLKDGSPLRNRK--GEITSAYNGVF---YKTIHLLENDITP---IW 77

Query: 64  IFD-------YPAVTFRNEIYPDY--KANRPKIPEMLLPQLPLVRL-------------- 100
           +FD             R E+      K       E         +               
Sbjct: 78  VFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKY 137

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
                GIP +E    E +   +         G    ++S D D +   SP      T  +
Sbjct: 138 LLSLMGIPYVEAPS-EGEAQASYMAKK----GDVWAVVSQDYDALLYGSPRVVRNLTTTK 192

Query: 161 E---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQEYGNLEN 216
           E    I++  V++   I  + ++ +    G   D  P G+ GIG+K A  L++       
Sbjct: 193 EMPELIELNEVLEDLRISLDDLIDIAIFMG--TDYNPGGVKGIGFKRAYELVR------- 243

Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                S + +   ++ +  Y E  R+ ++        P       L L+  +   +I FL
Sbjct: 244 -----SGVAKDVLKKEVENYEEIKRIFKE--------PKVTDSYSLSLKLPDKEGIIKFL 290

Query: 277 ---KALEFTKLINRVATTYDCDAANIEPVVLDI 306
                  + ++   V   Y+  A   +   LD 
Sbjct: 291 VDENDFSYERVKKHVDKLYNLIANKTKQKTLDA 323


>gi|88857337|ref|ZP_01131980.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           tunicata D2]
 gi|88820534|gb|EAR30346.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           tunicata D2]
          Length = 375

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 63/202 (31%), Gaps = 26/202 (12%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     + +++Q + T    +           + +   I                 
Sbjct: 2   HYQYIQEQSQLDEFLQAISTQSVLAIDTEFMRRRTLYPEIALI----------------- 44

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
                 V   Q     +      LS   +   +   LK+ H+   D  V  ++G      
Sbjct: 45  -----QVFDGQHLGLIDPCCDLDLSRFWQIMSDAAILKVLHSPSEDVEVFLKHGCIPSPI 99

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D      +L  G +    A + +++L  T   I KS   +  + +   +   E+A  + 
Sbjct: 100 FDTQFALSLL-GGANCLGFAIMVERFLGLT---IDKSESRTNWLQRPLSASQLEYAAGDV 155

Query: 547 NVILQLWLLLRPKLIVEKLLHV 568
             +L  +  +R ++     +++
Sbjct: 156 FYLLPCFEKIRAEIEALGFMNI 177


>gi|88658362|ref|YP_507121.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas]
 gi|88599819|gb|ABD45288.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas]
          Length = 387

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 79/223 (35%), Gaps = 29/223 (13%)

Query: 370 KIVNTKDIQQWVQKLE--TIGSASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            I   K++++   +L        +       +   ++ K   I I+    K+     V  
Sbjct: 2   LIDTVKELERLCNQLLVLQPKFIAVDTEFVRSSSEYYPKLCLIQIAY--GKEQFVIDVLA 59

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-G 485
             +DLSV                   L   F NE  +K+ H+ + D   L      +   
Sbjct: 60  KDMDLSV-------------------LGHIFYNESIIKVFHDCRQDIDALLTKFPEIPSP 100

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  + +       ++   + + +++L  +  ++  S K S    +   +   ++A+ +
Sbjct: 101 IFDTQIAAMFCCCYDNAVGYSKLVEQFLGISLDKL--SLKRSNWALRPLSADKIQYALND 158

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              + +L+ +L   L+    L  +  L++    V+ ++    +
Sbjct: 159 VIYLYELYQILYNNLLDAGKLPWF--LEEMNNIVLQEVNCNDV 199


>gi|229846478|ref|ZP_04466586.1| ribonuclease D [Haemophilus influenzae 7P49H1]
 gi|229810571|gb|EEP46289.1| ribonuclease D [Haemophilus influenzae 7P49H1]
          Length = 380

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N   +  I +   + +     +   + +       +  +  K   I +   ++     
Sbjct: 5   CQNPPHFRVISDNAALLEICNLAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLID 64

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYG 480
               T F                              N   LKI H+   D LV L  + 
Sbjct: 65  PLAITDFSP----------------------FVALLSNPKVLKILHSCSEDLLVFLQEFD 102

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              R   D  +M+  +  G S+  +A +AQ++L+    EI K    +  I +       +
Sbjct: 103 QLPRPMIDTQIMARFIGLGTSA-GLAKLAQQYLNI---EIDKGATRTNWIKRPLSDIQLQ 158

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L L+ +L  +L  
Sbjct: 159 YAAGDVWYLLPLYHILEKELAK 180


>gi|225442373|ref|XP_002281479.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 336

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 62/179 (34%), Gaps = 17/179 (9%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + I    +  D         + L+   +          ++++   K   E+ +  K+ H+
Sbjct: 55  LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGEKLMKACKPALESSYITKVIHD 114

Query: 469 IKYDKLVLH-RYGISMRGFEDIMLMSYVLDS--GRSSHDIASIAQ-------KWLSYTRK 518
            K D   L+ ++GI +    D  +   +++   GR       I+        ++   +  
Sbjct: 115 CKRDSEALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRSPDDYISFVGLLADPRYCGISYL 174

Query: 519 E------ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           E      +LK          +S+  V+  A ++   +  ++  +  +L    L  +  R
Sbjct: 175 EKKEVRVLLKQDPKFWTYRPLSELMVRA-AADDVRFLPYIYYKMMEELNEHSLWKLAVR 232


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 1436

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 415 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 474 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 532 TLELSRTINTEYGKHGLNFLAKKY 555


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 415 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 474 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 532 TLELSRTINTEYGKHGLNFLAKKY 555


>gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries]
          Length = 401

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 123/341 (36%), Gaps = 61/341 (17%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LS L++ F++E   K+ H+ + D   L  R+    R   D    S + +   +S   + +
Sbjct: 68  LSPLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKL 127

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLH 567
            +++L     ++L  R        +S+ +V  +A+++   + +L+ +L   L   E+L  
Sbjct: 128 VEQFLGVKLNKLLFKRV-DWSHRPLSEGKV-RYALDDVTYLHELYEVLLGILTAKERLTW 185

Query: 568 VYERLDKPMIDVV--SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN--- 622
             E ++      V      + G+    + L +  A I+++++   E +  L     N   
Sbjct: 186 FLEEMENIAEAFVDNYDSLLEGMDFFPE-LGESEAIIARSIIEWREKVARLFNVNRNIVM 244

Query: 623 ------------LSSPKQLGDILFTKL--------------KFPSGAKTKTGQWKTTAQD 656
                       L S  +  ++L+  +                 S A  K G +K   +D
Sbjct: 245 HSKSVLLATKDFLRSRDE--EVLYRYVSGSYLDNLPFSLCDILESSAGRKLGVYKLVDRD 302

Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
              ++     +     E     K+ ++  + L   INK    +   +             
Sbjct: 303 KPMLSALLILLNSMCREHGISQKLVASKVE-LVKLINKIHSNIMHGW------------- 348

Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757
                    + +   +    FI+  T+ + S D S  ++R+
Sbjct: 349 ---------RYEFFGRKVEKFIAGETRLIFSVDNSDGQMRL 380


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 415 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 474 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 532 TLELSRTINTEYGKHGLNFLAKKY 555


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 415 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 474 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 532 TLELSRTINTEYGKHGLNFLAKKY 555


>gi|68171541|ref|ZP_00544920.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999046|gb|EAM85718.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
          Length = 387

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 79/223 (35%), Gaps = 29/223 (13%)

Query: 370 KIVNTKDIQQWVQKLE--TIGSASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            I   K++++   +L        +       +   ++ K   I I+    K+     V  
Sbjct: 2   LIDTVKELERLCNQLLVLQPKFIAVDTEFVRSSSEYYPKLCLIQIAY--GKEQFVIDVLA 59

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-G 485
             +DLSV                   L   F NE  +K+ H+ + D   L      +   
Sbjct: 60  KDMDLSV-------------------LGHIFYNESIIKVFHDCRQDIDALLTKFPEIPSP 100

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  + +       ++   + + +++L  +  ++  S K S    +   +   ++A+ +
Sbjct: 101 IFDTQIAAMFCCCYDNAVGYSKLVEQFLGISLDKL--SLKRSNWALRPLSADKIQYALND 158

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
              + +L+ +L   L+    L  +  L++    V+ ++    +
Sbjct: 159 VIYLYELYQILYNNLLDAGKLPWF--LEEMNNIVLQEVNCNDV 199


>gi|321462891|gb|EFX73911.1| hypothetical protein DAPPUDRAFT_226991 [Daphnia pulex]
          Length = 1206

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 27/157 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +      + T+T R         +   K  +G +++     PP    + AD    EL I 
Sbjct: 795 ILPQIVTSGTLTRRAVESTWLTASNAYKDRIGSELKAMIQCPPGFNFVGADVDSQELWIA 854

Query: 759 AHIAKITPLYQ----VF---------ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           + I       Q     F          +  D+H   AA +      +++   R  AK +N
Sbjct: 855 SIIGDSFFAGQHGSTAFGWMTLQGKKSDGTDMHSRTAAAV------EIT---RDQAKILN 905

Query: 806 FSIIYGISPF-----RLATQLRIPRSEAADYIKRYFH 837
           +  IYG          +    R+   EA++  ++ + 
Sbjct: 906 YGRIYGAGERFARTLLMQFNHRLTEKEASEKARKMYS 942


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|255029724|ref|ZP_05301675.1| 5-3 exonuclease family protein [Listeria monocytogenes LO28]
          Length = 45

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 38 IAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR 84
          + GF   ++  ++    +S  +H  + +D  + TFRNE+Y  YKA R
Sbjct: 1  MQGFMRHMFAAIR----QSNPTHTLICWDMGSQTFRNELYDGYKAGR 43


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 421 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 480 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 538 TLELSRTINTEYGKHGLNFLAKKY 561


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 415 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 474 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 532 TLELSRTINTEYGKHGLNFLAKKY 555


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 415 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 474 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 532 TLELSRTINTEYGKHGLNFLAKKY 555


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1436

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 415 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 474 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 532 TLELSRTINTEYGKHGLNFLAKKY 555


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1442

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 421 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 480 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 538 TLELSRTINTEYGKHGLNFLAKKY 561


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|194366535|ref|YP_002029145.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
 gi|194349339|gb|ACF52462.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
          Length = 358

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 62/191 (32%), Gaps = 9/191 (4%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
                T+    F  +P  I + T   ++ T +    +   + +   QD    + L   + 
Sbjct: 4   WITTPTELDAYFQQRPSRIGLDTEFIRERTFWPQLAL---VQMAVGQDILLIDPLIPGMA 60

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             L  +  +E  +K+ H+   D +      G+  R   D  + +  L           + 
Sbjct: 61  EALAPWLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGA-SLAGIGGGMGYQKLV 119

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHV 568
            +        + K    S  + +       ++A ++   +  +   +  KL        +
Sbjct: 120 AEITGVA---LAKGETRSDWMRRPLSESQLQYAADDVEHLFAMHDAIDAKLQALGRQQWL 176

Query: 569 YERLDKPMIDV 579
           ++  ++ +  V
Sbjct: 177 HDDGERLLASV 187


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 1436

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 415 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 474 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 532 TLELSRTINTEYGKHGLNFLAKKY 555


>gi|68248994|ref|YP_248106.1| ribonuclease D [Haemophilus influenzae 86-028NP]
 gi|68057193|gb|AAX87446.1| ribonuclease D [Haemophilus influenzae 86-028NP]
          Length = 380

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +V T F  L +    D    + +    ++    F     N   LKI H+   D L
Sbjct: 36  DTEFMRVSTYFPKLGLIQLYDDERVSLIDPLAITDFSPFVALLSNPKVLKILHSCSEDLL 95

Query: 475 V-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V L  +    R   D  +M+  L  G S+  +A +AQ++L+    EI K    +  I + 
Sbjct: 96  VFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNI---EIDKGATRTNWIKRP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                 ++A  +   +L L+ +L  +L  
Sbjct: 152 LSDIQLQYAAGDVWYLLPLYHILEKELAK 180


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
          Length = 1438

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|37679238|ref|NP_933847.1| ribonuclease D [Vibrio vulnificus YJ016]
 gi|37197981|dbj|BAC93818.1| ribonuclease D [Vibrio vulnificus YJ016]
          Length = 390

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 33/211 (15%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  I   +D+ +   K                                       + 
Sbjct: 19  RVNYQIITENQDLARVCSKAREADVVMLDTEF-------------------------VRT 53

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
            T +  L +    D    + +   +L   S   +   +   +K+ H    D  V H  +G
Sbjct: 54  RTYYPQLGLIQLFDGDSLSLIDPTVLTDMSAFTELLNDASVMKVLHACGEDLEVFHNAFG 113

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  D  +M+  L     S   A++ +++L+    E+ KS   +  + +    +  E
Sbjct: 114 AMPVPMVDTQIMAAFL-GHGLSTGFAALVEQYLNV---ELDKSESRTDWLARPLSDKQLE 169

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +A  + + +L L+ +L  K++        ++
Sbjct: 170 YAAADVHYLLPLYEILLEKVMAAGWWQAAQQ 200


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 415 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 474 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 532 TLELSRTINTEYGKHGLNFLAKKY 555


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
          Length = 1442

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 421 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 480 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 538 TLELSRTINTEYGKHGLNFLAKKY 561


>gi|332021038|gb|EGI61427.1| Exonuclease 3'-5' domain-containing protein 1 [Acromyrmex
           echinatior]
          Length = 832

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 73/187 (39%), Gaps = 24/187 (12%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL---DSGRSSH----- 503
           L+K  E+ H  K+ H+ + D + L+  + I++    D      VL   D+G+  +     
Sbjct: 462 LQKLLEHPHVTKVIHDCRNDSVNLYNQFNITLTNVFDTQAAHAVLQFQDTGKPVYKVKNV 521

Query: 504 DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           ++ ++   +      L    K I +  +       I+   +   + +  +++ Q++  + 
Sbjct: 522 NLNTLCDHYNAPCNPLKEQLKNIYRKDQRYWSRRPITREMLIYASSDVLSLVPQVYNAM- 580

Query: 558 PKLIVEKLLHVYERL-------DKPMIDVVSQMEITGIQIDQDLL-KQVSAEISKNLLSL 609
            +LI  +   ++  L             V ++ +   I  +   L K++    SKN++  
Sbjct: 581 SRLIKPEQESLFAELCEEQIQMHIRPAIVKARKKQRKIATELSDLKKRMEEATSKNIVLS 640

Query: 610 EENIYDL 616
              I  L
Sbjct: 641 NREIRLL 647


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 421 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 480 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 538 TLELSRTINTEYGKHGLNFLAKKY 561


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU045]
          Length = 1438

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
          Length = 1442

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 421 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 480 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 538 TLELSRTINTEYGKHGLNFLAKKY 561


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
          Length = 1438

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU144]
          Length = 1438

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis FRI909]
          Length = 1438

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 1438

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 12/143 (8%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVET-IFIDLSVHTSQDS 439
            +L+T     F I T  +    +K I IA +   + K+   +         +  H  Q +
Sbjct: 414 DELKTATYVVFDIETTGLSVTQNKIIEIAAVKMREGKEIDRYATFVNPHERIPYHIQQLT 473

Query: 440 TGKNTLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYGISM--RGFEDI 489
              + + K+   +   LK+F E  E  + + HN ++D       L   G+ +      D 
Sbjct: 474 NINDDMVKDAPDVEPVLKRFVEFAEDAILVAHNARFDYDFVNAKLKELGLPIMENPVLDT 533

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++ +L     +H + ++A K+
Sbjct: 534 LELARMLFPTMKNHRLNTLAAKY 556


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
          Length = 1438

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|193084394|gb|ACF10047.1| XPG I flap structure-specific endonuclease [uncultured marine
           crenarchaeote SAT1000-21-C11]
          Length = 341

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 23/144 (15%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVSPTT- 152
           +     FGIP I+ +     D  AT  ++  K G A  + S D D +     +LV   T 
Sbjct: 136 KHFLDLFGIPYIQAKA----DGEATAAHM-NKTGKAYAVASQDYDSILFGATKLVRNFTN 190

Query: 153 --CLYDTVKEEKIDIE-------HVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYK 202
                   +   ID+E         +   GI  E+++ +  L G   D  P G   IG K
Sbjct: 191 SGRRKIPNRNTYIDVEPEMISHQKSLDALGITGEQIIDIGILVG--TDFNPDGFERIGPK 248

Query: 203 TAALLLQEYGNLENILINASRIKQ 226
           TA  +++EYG LE+I      +KQ
Sbjct: 249 TALKMIKEYGKLEDIPKIQEELKQ 272


>gi|297743128|emb|CBI35995.3| unnamed protein product [Vitis vinifera]
          Length = 367

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 62/179 (34%), Gaps = 17/179 (9%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + I    +  D         + L+   +          ++++   K   E+ +  K+ H+
Sbjct: 86  LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGEKLMKACKPALESSYITKVIHD 145

Query: 469 IKYDKLVLH-RYGISMRGFEDIMLMSYVLDS--GRSSHDIASIAQ-------KWLSYTRK 518
            K D   L+ ++GI +    D  +   +++   GR       I+        ++   +  
Sbjct: 146 CKRDSEALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRSPDDYISFVGLLADPRYCGISYL 205

Query: 519 E------ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           E      +LK          +S+  V+  A ++   +  ++  +  +L    L  +  R
Sbjct: 206 EKKEVRVLLKQDPKFWTYRPLSELMVRA-AADDVRFLPYIYYKMMEELNEHSLWKLAVR 263


>gi|255712831|ref|XP_002552698.1| KLTH0C11066p [Lachancea thermotolerans]
 gi|238934077|emb|CAR22260.1| KLTH0C11066p [Lachancea thermotolerans]
          Length = 735

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 65/162 (40%), Gaps = 12/162 (7%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L+  D  ++   T  + +S    +D        ++ L  L + F +    K+ H    D 
Sbjct: 241 LEHHDYRTYYGITCLMQIST-REKDWLIDTIALRDDLWILNEVFTDPKITKVLHGAFMDI 299

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           + L R  G+ +    D    S +L S +  H +A + +++  +       S+K  +   +
Sbjct: 300 IWLQRDLGLYIVSLFDTYHASRLLGSPK--HSLAYLLERYAHFKT-----SKKYQLSDWR 352

Query: 533 I--SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYER 571
           +      ++ +A  +++ +L ++  +R  L    KL  V   
Sbjct: 353 VRPLPKALKAYARADTHFLLNIYDNMRNSLIEQNKLSQVLHD 394


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 415 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 474 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 532 TLELSRTINTEYGKHGLNFLAKKY 555


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFIDLSVHTSQ-- 437
                  F + T  + + +   I I         +  + D       +  D +++ +   
Sbjct: 403 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 462

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 520

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 521 EVSRLLHPEQTRHTLDSLAKKY 542


>gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 27-2-CHN]
 gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
 gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 27-2-CHN]
 gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
          Length = 1439

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HTS 436
           E      F + T  + + +   I I A+   D +    F         LS         +
Sbjct: 418 ENREFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIERFDEFINPHHPLSETTINLTSIT 477

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +   K     E++   ++F+ +      GHN+++D       L R G+    +   D +
Sbjct: 478 DEMVSKADDEAEVIKRFQEFYGD--RPLCGHNVQFDVGFVNAALRRSGLKEITQPVVDTL 535

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+ +K+
Sbjct: 536 EVSRLLHPEQTKHTLDSLCKKY 557


>gi|70950310|ref|XP_744489.1| exonuclease [Plasmodium chabaudi chabaudi]
 gi|56524464|emb|CAH74590.1| exonuclease, putative [Plasmodium chabaudi chabaudi]
          Length = 406

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 73/195 (37%), Gaps = 26/195 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           +      +       +   + K   + I T  +K D  F+   IF              +
Sbjct: 99  INCNDIIAVDFEGTNLG-RYGKVCLMQIYTEIEKKDKVFEKYYIF--------------D 143

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSS 502
            L K +++ +KK  EN+  LK+ H+ + D   L+    I      D +    +L   +  
Sbjct: 144 LLNKSVINSVKKIIENKKTLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLEKKKE 203

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----------HAIENSNVILQL 552
           +DI  ++   L +    +     ++I  +   + ++ E          +A++N   +L +
Sbjct: 204 NDIYQVSFLNLLHDYLGVKDDCLNNIKKEMYKNDKIWEIRPLSKISIIYALKNVKYLLPI 263

Query: 553 WLLLRPKLIVEKLLH 567
           + +    +  +++L 
Sbjct: 264 YKIFDKLISKKEVLE 278


>gi|48477300|ref|YP_023006.1| flap endonuclease-1 [Picrophilus torridus DSM 9790]
 gi|73919351|sp|Q6L2I9|FEN_PICTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|48429948|gb|AAT42813.1| RAD-2/FEN-1 exonuclease [Picrophilus torridus DSM 9790]
          Length = 338

 Score = 52.0 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 29/148 (19%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +      G+P ++       +  A+Y  +   +G    ++S D D +   +       TV
Sbjct: 136 KTLLNLMGLPYVQAP--SEGEAQASYMTL---KGDVNAVVSQDYDCLLFGAKRILRNFTV 190

Query: 159 KE---------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
                            E ID+   +   GI  E+++ +  LTG   D  PG+ GIG KT
Sbjct: 191 YGRRRIAGTSRTINVNPEIIDLNENLSNLGISREQLIYIGILTG--TDFNPGVKGIGAKT 248

Query: 204 AALLLQEYGNLENI-------LINASRI 224
           A  L+++Y ++ ++       + N   I
Sbjct: 249 ALSLIKKYNDIYSVIKIKNIGIDNLDEI 276


>gi|242009894|ref|XP_002425717.1| DNA polymerase subunit gamma, putative [Pediculus humanus corporis]
 gi|212509618|gb|EEB12979.1| DNA polymerase subunit gamma, putative [Pediculus humanus corporis]
          Length = 1124

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 65/179 (36%), Gaps = 26/179 (14%)

Query: 689 PNHINKRTQ--RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746
           P+ +N+ T    +     +A T+T R         +   +  +G ++R    +P    ++
Sbjct: 717 PDLLNEDTSVGIIIPMVVVAGTVTRRAVERTWLTASKVSENRIGSELRALVQAPSGYHIV 776

Query: 747 SADYSQIELRILAHI-----AKITPLYQVFE--------NSLDIHRMVAAEIFGVNIEKV 793
            AD    EL I A +     AK+     +          N  D+H   A  I        
Sbjct: 777 GADVDSQELWIAALLGDSTYAKVHGCTPLGWMTLQGTKSNESDMHSRTAKAI-------- 828

Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852
               R HAK +N++ IYG    + A +L    +   +           I++Y +  K F
Sbjct: 829 -GISRDHAKILNYARIYGAGV-KFAQKLLQQFNPLLNESDALKKATK-IYQYTKGVKRF 884


>gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719]
 gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719]
          Length = 374

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRS 501
           + L  +  S   +  E+E  +K+ H    D  V  R  G       D  L +  L     
Sbjct: 59  DPLLIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAH 117

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           S   + + ++ L     ++ K    S  + +        +A ++   + Q++L L  +L 
Sbjct: 118 SMGYSKLVKEVLDI---DLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLS 174

Query: 562 VEKLLHVYER 571
            EK   + E 
Sbjct: 175 EEKRAWLLED 184


>gi|20092799|ref|NP_618874.1| flap endonuclease-1 [Methanosarcina acetivorans C2A]
 gi|28380016|sp|Q8TIY5|FEN_METAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|19918097|gb|AAM07354.1| FlaP endonuclease-1 [Methanosarcina acetivorans C2A]
          Length = 338

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 102/320 (31%), Gaps = 79/320 (24%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKES 56
           N +  VD  + +    +    + R+ DG P         + ++G       L++   K  
Sbjct: 21  NRVVAVDAFNTL----HQFLSIIRQRDGSPLVNSRGKVTSHLSGLLYRTASLVEAGIKP- 75

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRP---------KIPEMLLPQLPLVRL------- 100
                  IFD      ++E     K  R          K    L       +        
Sbjct: 76  -----VFIFDGKPPDLKSETLSRRKEVRETSLEKWENAKAEGDLEAAYKYAQASSRVDQE 130

Query: 101 -------ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
                       GIP I+    E +   A   ++  K+     + S D D     +P   
Sbjct: 131 IVEDSKYLLGIMGIPWIQAPC-EGE---AQAAHMVLKKDAD-YVASQDYDSFLFGAPKVV 185

Query: 154 L--------YDTVKEEKIDIEHVIKK-------WGIPPEKMVCLQALTGDSIDNIPGIPG 198
                        K   +D+E  + +         I  ++++ +    G   D   G+  
Sbjct: 186 RNMAVTGKRKLPGKNVYVDVELEVIELEETLRALEINRDQLIDIAICVG--TDYNKGLEK 243

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258
           +G KTA  L++++G++  +L         + ++  +E  +     RKL    T   +T  
Sbjct: 244 VGPKTALKLIKKHGDIHAVL---------REKDMEIEGLDRI---RKL---FTHPEVTED 288

Query: 259 LEHLILEDCNGPRLISFLKA 278
            E +     +  +LI FL  
Sbjct: 289 YE-IKWTKPDSEKLIKFLCE 307


>gi|302410881|ref|XP_003003274.1| DNA polymerase gamma [Verticillium albo-atrum VaMs.102]
 gi|261358298|gb|EEY20726.1| DNA polymerase gamma [Verticillium albo-atrum VaMs.102]
          Length = 963

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 72/265 (27%), Gaps = 55/265 (20%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +        T+T R         +   +  +G +++    +PP    + AD    EL I 
Sbjct: 583 ILPQIIPMGTITRRAVENTWLTASNAKRNRVGSELKAMVKAPPGYSFVGADVDSQELWI- 641

Query: 759 AHIAKITPLYQVFEN-------------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805
           A +           N               D+H   A  I G+         R  AK  N
Sbjct: 642 ASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAG-ILGIT--------RNDAKVFN 692

Query: 806 FSIIYGISPFRLATQL------RIPRSEAADYIKRYFHRFPGIHE--------------- 844
           +  IYG    + A QL       +   E  +   + +    G                  
Sbjct: 693 YGRIYGAG-LKFAAQLLRQFDPNLSEKETLETASKLYVNTKGTKTNRKVLYKRPFWRGGT 751

Query: 845 --YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902
             ++        +     T        + +       +     + IN  IQ S  D    
Sbjct: 752 ESFVFNKLEEFAEQERPRTPVLGAGITEALMGR-FINKGGYLTSRINWAIQSSGVDYLHL 810

Query: 903 AMISVH-------KSLEDHKLATKM 920
            ++++         +L D     ++
Sbjct: 811 LIVTIPHGESLDINALLDKGDEARL 835


>gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
 gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 208-1]
          Length = 1439

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HTS 436
           E      F + T  + + +   I I A+   D +    F         LS         +
Sbjct: 418 ENREFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIERFDEFINPHHPLSETTINLTSIT 477

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +   K     E++   ++F+ +      GHN+++D       L R G+    +   D +
Sbjct: 478 DEMVSKADDEAEVIKRFQEFYGD--RPLCGHNVQFDVGFVNAALRRSGLKEITQPVVDTL 535

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+ +K+
Sbjct: 536 EVSRLLHPEQTKHTLDSLCKKY 557


>gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 1153]
 gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 1153]
          Length = 1428

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HTS 436
           E      F + T  + + +   I I A+   D +    F         LS         +
Sbjct: 407 ENREFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIERFDEFINPHHPLSETTINLTSIT 466

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +   K     E++   ++F+ +      GHN+++D       L R G+    +   D +
Sbjct: 467 DEMVSKADDEAEVIKRFQEFYGD--RPLCGHNVQFDVGFVNAALRRSGLKEITQPVVDTL 524

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+ +K+
Sbjct: 525 EVSRLLHPEQTKHTLDSLCKKY 546


>gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii SJ-7A-US]
          Length = 1439

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HTS 436
           E      F + T  + + +   I I A+   D +    F         LS         +
Sbjct: 418 ENREFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIERFDEFINPHHPLSETTINLTSIT 477

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +   K     E++   ++F+ +      GHN+++D       L R G+    +   D +
Sbjct: 478 DEMVSKADDEAEVIKRFQEFYGD--RPLCGHNVQFDVGFVNAALRRSGLKEITQPVVDTL 535

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+ +K+
Sbjct: 536 EVSRLLHPEQTKHTLDSLCKKY 557


>gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 269-3]
 gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus jensenii 269-3]
          Length = 1405

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HTS 436
           E      F + T  + + +   I I A+   D +    F         LS         +
Sbjct: 384 ENREFVIFDVETTGLSSVYDTIIEIGAVKMKDGEVIERFDEFINPHHPLSETTINLTSIT 443

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFEDIM 490
            +   K     E++   ++F+ +      GHN+++D       L R G+    +   D +
Sbjct: 444 DEMVSKADDEAEVIKRFQEFYGD--RPLCGHNVQFDVGFVNAALRRSGLKEITQPVVDTL 501

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+ +K+
Sbjct: 502 EVSRLLHPEQTKHTLDSLCKKY 523


>gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
           13941]
 gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 944

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 71/195 (36%), Gaps = 31/195 (15%)

Query: 389 SASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVETIFI-DLSVHT----SQDST 440
             +  + T  ++A   + I IA     T +  +     V+      L+       + +  
Sbjct: 5   YVAIDVETTGLEAGVDEIIEIAAVKFRTGEVIETFDTLVQPRHSLPLNSSRLTGITAEML 64

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSG 499
                  E+      F +N  +  +GHN+++D  +L   G+ + +   D   ++ +L   
Sbjct: 65  AGAPRFSEVAPRFAAFLKN--YPLVGHNVRFDINMLQAQGMRLPQPAFDTFELATLLMPR 122

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
             ++ ++++A+  L     E                      A+ +++V  Q++L L  +
Sbjct: 123 TPAYRLSALAET-LGIVHDE-------------------AHRALSDADVTRQVFLHLLRR 162

Query: 560 LIVEKLLHVYERLDK 574
           +    L  + E +  
Sbjct: 163 IDALSLNDLNEIVRL 177


>gi|255261512|ref|ZP_05340854.1| ribonuclease D [Thalassiobium sp. R2A62]
 gi|255103847|gb|EET46521.1| ribonuclease D [Thalassiobium sp. R2A62]
          Length = 385

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 69/196 (35%), Gaps = 22/196 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T+++  + Q+       +          ++SK   I ++   + D+ +  V+ +  
Sbjct: 3   TITTTQELAAFCQEAAAHPYVTVDTEFLRERTYYSKLCLIQLAYPGEGDENAVLVDPLED 62

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
            LS                 L+ L   F + + +K+ H  + D  +     GI      D
Sbjct: 63  GLS-----------------LASLYDLFRDPNVVKVFHAARQDLEIFFVDEGIIPAPLFD 105

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + + V   G       ++ +K     +  + KS + +    +      +++A+ +   
Sbjct: 106 TQVAAMVCGFGEQV-GYETLVRK---IAKAPLDKSSRFTDWSRRPLSDAQKKYALGDVTY 161

Query: 549 ILQLWLLLRPKLIVEK 564
           + +++  L  KL    
Sbjct: 162 LREIYEFLADKLAKNN 177


>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 956

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 72/198 (36%), Gaps = 31/198 (15%)

Query: 389 SASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVETIFI-DLSVHT----SQDST 440
             +  + T  ++A   + I IA    +  +  +  S  V+ +    L+       + D  
Sbjct: 5   YIAIDVETTGLEAGVDEIIEIAAVKFNADEVLETFSTLVQPVHSLPLNSSRLTGITADML 64

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSG 499
                  E+      F +N  +  +GHN+++D  +L   G+ + +   D   ++ +L   
Sbjct: 65  ASAPRFAEVAPRFAAFLKN--YPLVGHNVEFDLRMLRAQGMRLPQPAFDTFELATLLMPR 122

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
             ++ ++++A   L     E                      A+ +++V  Q++L L  +
Sbjct: 123 TPAYRLSALAAT-LGIHHDE-------------------AHRALSDADVTRQIFLYLLRR 162

Query: 560 LIVEKLLHVYERLDKPMI 577
           +    L  + E +     
Sbjct: 163 IEALPLDDLNEIMRLTSQ 180


>gi|302306959|ref|NP_983403.2| ACL001Cp [Ashbya gossypii ATCC 10895]
 gi|299788769|gb|AAS51227.2| ACL001Cp [Ashbya gossypii ATCC 10895]
          Length = 745

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 90/284 (31%), Gaps = 32/284 (11%)

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           I +    +     N E         E        E       +     +      +   +
Sbjct: 129 IEKPQLLFKTPVDNTELHPFKPLLKEKPHALKPLEESLMLAPEEENVPAHYPHPYEYEID 188

Query: 345 QTP-QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
           + P     LE  +++   P        + N + + Q + +L+ +   +  +         
Sbjct: 189 KQPYNDSVLEVRERIDPQPWEATEPIWVDNVESLSQMLDELKEVKELAVDLE-------- 240

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                         D  S+      + +S   S+D        ++ L  L   F +   +
Sbjct: 241 ------------HHDYRSYYGIVCLMQIS-SRSKDWLVDTIALRDDLHVLNVIFTDPTVV 287

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H    D + L R  G+ +    D    S  L  G   H +A     +L  T  +   
Sbjct: 288 KVFHGAFMDMIWLQRDLGLYVVSLFDTYHASRAL--GFPKHSLA-----YLLETFAKFKT 340

Query: 523 SRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           S+K  +   ++      ++++A  +++ +L ++  LR  L+   
Sbjct: 341 SKKYQLADWRVRPLPKPLRDYARSDTHFLLSIYDDLRNALVKAG 384


>gi|224142834|ref|XP_002324746.1| predicted protein [Populus trichocarpa]
 gi|222866180|gb|EEF03311.1| predicted protein [Populus trichocarpa]
          Length = 331

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 63/188 (33%), Gaps = 17/188 (9%)

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           ++   +K + I      +  D         + L+   +          + ++   K   E
Sbjct: 38  LNPSAAKQLIIGF--DCEGVDLCRHGTLCIMQLAFPDAIYLVDAIKGGESLIRACKPALE 95

Query: 459 NEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDI--ASIAQKWL-- 513
           + H  K+ H+ K D   L+ ++GI +    D  +    ++       +    I+   L  
Sbjct: 96  SSHITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSQIEEQEGRTRLPDDYISFVGLLA 155

Query: 514 --SYTRKEILKSRKSSIPIDKIS--------DSQVQEHAIENSNVILQLWLLLRPKLIVE 563
              Y     L+  +  + + +             +   A ++   +L+++  +  KL   
Sbjct: 156 DPRYCGISYLEKEEVRVLLRQDPMFWTYRPLSEMMIHAAADDVRFLLRIYYKMMEKLNQR 215

Query: 564 KLLHVYER 571
            L ++  R
Sbjct: 216 SLWYLAVR 223


>gi|119775068|ref|YP_927808.1| ribonuclease D [Shewanella amazonensis SB2B]
 gi|119767568|gb|ABM00139.1| ribonuclease D [Shewanella amazonensis SB2B]
          Length = 371

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 27/196 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            +  + + + +   V +                  +++K   I                 
Sbjct: 3   EFHYVKDDEALTALVDQYSQSRLLVLDTEFVRTRTYYAKLGLI----------------- 45

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
                 V+        + L  + LS       N + LK+ H+   D  V  RYG +    
Sbjct: 46  -----QVYDGNTLALIDPLDIQDLSGFWALLTNPNILKLVHSCSEDLEVFARYGKVQPTP 100

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  + + +   G      A + ++ L  T   + K    +  I +       ++A  +
Sbjct: 101 LFDSQIAAALSGMG-HGLGYAKLVEECLGQT---LDKGESRTDWIKRPLTDAQLQYAAND 156

Query: 546 SNVILQLWLLLRPKLI 561
              + QL+  L  KL 
Sbjct: 157 VFYLYQLYPQLEQKLK 172


>gi|312218247|emb|CBX98193.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria
           maculans]
          Length = 783

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 97/293 (33%), Gaps = 30/293 (10%)

Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344
           + R++   +  AA   P + D      + I  + ++  +      +        +     
Sbjct: 108 VKRLSPAGETAAATPRPNIAD------RKIIPKPQLQFEYVPTNDESGGFRPLVTAKPHA 161

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTK-IVNTKDIQQWVQKLETIGSASFKIIT------- 396
           + P +  L+  +           Y   I   +      +  E      F+  T       
Sbjct: 162 KIPLEKCLQTFKDKHGREQYPHPYQTEIETYEYPPSLYKHAEPQRYEPFESTTAIFVDTP 221

Query: 397 DTMDAFHSKP-IAIAIST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
           + + +  ++   A  I+  L+  D+ S+      + +S              +  L  L 
Sbjct: 222 EALASMLAELKTAKEIAVDLEHHDNRSYIGIVSLMQISTRNQDWIVDTLKPWRRKLECLN 281

Query: 455 KFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           + F N   +K+ H    D + L R  G+ + G  D    +  L  G     +A +  +++
Sbjct: 282 EVFANPDIIKVLHGAYMDIMWLQRDLGLYVVGLFDTYHAARSL--GYPGASLAYLLDRFI 339

Query: 514 SYTRKEILKSRKSSIPIDKISD----SQVQEHAIENSNVILQLWLLLRPKLIV 562
            +         +    I          ++ E+A  +++ +L ++  +R +L+ 
Sbjct: 340 GF-------KAQKQYQIADWRIRPLGKELFEYARADTHFLLYIFDNMRNELVE 385


>gi|329898076|ref|ZP_08272286.1| Ribonuclease D [gamma proteobacterium IMCC3088]
 gi|328920975|gb|EGG28399.1| Ribonuclease D [gamma proteobacterium IMCC3088]
          Length = 373

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 37/219 (16%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + N+ D+++ V   ++  +            ++ KP  + ++                  
Sbjct: 9   VANSDDLERTVASYQSNQAVVLDTEFVRERTYYPKPALVQLAGAGHISLV--------DP 60

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
           ++V  +              S L    E+E  LK+ H+   D  V     G  ++G+ D 
Sbjct: 61  VAVTDA--------------SALSSLLESERTLKVVHSGSEDLEVFQAWLGCPIKGWFDT 106

Query: 490 MLMSYVLDSGRSSHDIA----SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + + +L      +  A    +I + +L    +E+ K    S  + +       ++AI +
Sbjct: 107 QVAAALL-----GYGYAIGYRNIVETFLG---EELDKGETRSDWLQRPLSDSQLQYAIAD 158

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
              +  ++  L  +   E L  V   L++    V+    
Sbjct: 159 VLYLEPVFERLYQE--AEALGRVEWVLEEGARAVMGSQN 195


>gi|289617032|emb|CBI56259.1| putative Rad2 protein [Sordaria macrospora]
          Length = 1279

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            + +R    E+    +   +   + FGIP I     EA+   A    +   +G    I++ 
Sbjct: 875  RKDRRDADEVTQIMITECQALLRFFGIPYITAP-MEAEAQCAELVRLGLVDG----IVTD 929

Query: 141  DKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
            D D   L   T    +     K      +  + K+  +  E+++ L  L G   D   G+
Sbjct: 930  DSDTF-LFGGTRVYKNMFNGNKFVECYLLNDIEKELSLGREQLIALAQLLG--SDYTEGL 986

Query: 197  PGIGYKTAALLLQEY 211
            PG+G  TA  +L E+
Sbjct: 987  PGVGPVTAVEILSEF 1001


>gi|167648909|ref|YP_001686572.1| 3'-5' exonuclease [Caulobacter sp. K31]
 gi|167351339|gb|ABZ74074.1| 3'-5' exonuclease [Caulobacter sp. K31]
          Length = 205

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK+   +   +K+ H  ++D  + L   G+         + S +  +    H +  + ++
Sbjct: 64  LKRLLTDPSVVKLFHFGRFDIAMFLLHLGVMTAPVYCTKIASKLARTYTDRHGLKDVTRE 123

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            +     E+ K ++SS         +   +A  +   +  L   L   L+ E  + + +
Sbjct: 124 LVGV---ELSKVQQSSDWGAATLSPEQLAYAASDVLHLHALRERLNAMLVREGRMQLAQ 179


>gi|145632638|ref|ZP_01788372.1| ribonuclease D [Haemophilus influenzae 3655]
 gi|144986833|gb|EDJ93385.1| ribonuclease D [Haemophilus influenzae 3655]
 gi|309972450|gb|ADO95651.1| Ribonuclease D [Haemophilus influenzae R2846]
          Length = 380

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N   +  I +   + +     +   + +       +  +  K   I +   ++     
Sbjct: 5   CQNPPHFRVIADNATLLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLID 64

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYG 480
               T F                              N   LKI H+   D LV L  + 
Sbjct: 65  PLAITDFSPFIA----------------------LLANPKVLKILHSCSEDLLVFLQEFD 102

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  D  +M+  +  G S+  +A +AQ++L+    EI K    +  I +       +
Sbjct: 103 QLPHPMIDTQIMARFIGLGASA-GLAKLAQQYLNI---EIDKGATRTNWIKRPLSDIQLQ 158

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L L+ +L  +L  
Sbjct: 159 YAAGDVWYLLPLYHILEKELAK 180


>gi|325192518|emb|CCA26951.1| DNA repair protein putative [Albugo laibachii Nc14]
          Length = 939

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 13/132 (9%)

Query: 85  PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDL 144
               + ++ Q   V      FG+P +     EA+   AT   +   +G    I++ D D+
Sbjct: 646 EGFDDEMVEQ---VMELLTLFGVPFLVCP-MEAEAQCATLEQLGLVDG----IVTDDSDI 697

Query: 145 MQLVSPTT---CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
                        +     E  D   + ++ G     M+ L  L G   D  PG+ GIG 
Sbjct: 698 FPFGGTKVYKNIFHHQKFVEAFDTRDIERELGFTRADMISLALLLG--SDYTPGVRGIGI 755

Query: 202 KTAALLLQEYGN 213
             AA ++  +G+
Sbjct: 756 VNAAEIISSFGS 767


>gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 682

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 20/147 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSK-PIAIAISTLDQK----DDTSFKVETIFIDLS---- 432
           + L  +   +F   T  +        I++    +       D+T  +       +     
Sbjct: 483 RALHDLEIVAFDTETTGLALREGDRLISLGACRIVNGRLLADETFEQHVNPQRPIPSAST 542

Query: 433 -VHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-----ISMRG 485
            +H   D   +N  T E +L   + +  +   L   HN  +D L + R G       M  
Sbjct: 543 AIHGLGDQDVENAPTAEQVLPRFRDYVGSAVLL--AHNAAFDMLAI-RPGPGTDAFDM-P 598

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKW 512
             D +L+S  LD G   HD+ S+A+++
Sbjct: 599 VLDTLLLSRALDPGLEGHDLDSLAKRY 625


>gi|301758086|ref|XP_002914899.1| PREDICTED: DNA repair protein complementing XP-G cells-like
            [Ailuropoda melanoleuca]
          Length = 1644

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 26/201 (12%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 1233 QELLRLFGIPYIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 1287

Query: 159  KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
            K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 1288 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 1345

Query: 214  LENILINASRIKQKKRRENILEYAETARLSRKLVMLR----------TDVPITIPLEH-- 261
            LE +L  +    + ++ + I       ++ +KL  L+           D  +   ++   
Sbjct: 1346 LEPLLKFSEWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVVDDSR 1405

Query: 262  --LILEDCNGPRLISFLKALE 280
               +    +  ++  F +   
Sbjct: 1406 GSFLWGKPDLDKIREFCQRYF 1426


>gi|322700750|gb|EFY92503.1| DNA-repair protein rad2 [Metarhizium acridum CQMa 102]
          Length = 426

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 71/216 (32%), Gaps = 47/216 (21%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   +P    + T
Sbjct: 141 CQRLLKLMGIPFIIAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFNTPILLRHLT 195

Query: 158 VKEEK------IDIEHVIKKWGIPPEK-------------------------------MV 180
             E++      I ++ V++   +   +                                V
Sbjct: 196 FSEQRKEPIQEIHLDKVLEGLNMERSQVSFPTSKIEILGYYDGKFVRLTKALRLQKTKFV 255

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L  L G   D +  +P IG  TA  L++E+G LE ++    R  +KK    + E     
Sbjct: 256 DLCILLG--CDYLDPVPKIGPTTALKLIREHGTLEKVVDAIERDPKKKYT--LPEDWPY- 310

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
           + +R L           PL     +  +   L++FL
Sbjct: 311 KDARDLFFEPDVRKADDPLCDFKWDKPDVEGLVTFL 346


>gi|193084327|gb|ACF09984.1| XPG I flap structure-specific endonuclease [uncultured marine
           crenarchaeote SAT1000-49-D2]
          Length = 341

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 26/156 (16%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDL-----MQLVSPTT- 152
           +     FGIP I+       D  AT  ++  K G A  + S D D       +LV   T 
Sbjct: 136 KHLLDLFGIPYIQANA----DGEATAAHM-NKTGKAYAVASQDYDSILFGAKKLVRNFTN 190

Query: 153 --CLYDTVKEEKIDIEHVIKKW-------GIPPEKMVCLQALTGDSIDNIP-GIPGIGYK 202
                   +   +DIE  I  +       GI  E+++ +  L G   D  P G   IG K
Sbjct: 191 SGRRKLPNRNTYVDIEPEIISYQKSLDALGITGEQIIDIGILIG--TDFNPDGFDRIGPK 248

Query: 203 TAALLLQEYGNLENIL---INASRIKQKKRRENILE 235
           TA  +++EYG LE+I        +I  ++ R+  L+
Sbjct: 249 TALKMIKEYGKLEDIPKIQEQLEQIDYEQIRKIFLQ 284


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   ++K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYNKIIELA-AVKVHNGEIIDKFERFSNPHERLSETIINLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 476 ITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEYGKHGLNFLAKKY 557


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 421 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHDGEIIDKFERFSNPHERLSETIINLTH 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K++  +   + + HN  +D         R G      G  D
Sbjct: 480 ITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 538 TLELSRTINTEYGKHGLNFLAKKY 561


>gi|16127833|ref|NP_422397.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221236653|ref|YP_002519090.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13425349|gb|AAK25565.1| ribonuclease D, putative [Caulobacter crescentus CB15]
 gi|220965826|gb|ACL97182.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 205

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK    N   LK+ H  ++D  +     G+         + S +  +    H +  + ++
Sbjct: 64  LKALLTNPKVLKLFHFGRFDIAMFELHLGVVTAPVYCTKIASKLARTYTDRHGLKDVTRE 123

Query: 512 WLSYTRKEILKS---RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            L     ++ +S      S+ +D+++      +A  +   +  L L L   L  E  + +
Sbjct: 124 LLGVELSKVQQSSDWGAPSLSVDQVA------YAASDVLHLHGLRLKLNAMLEREGRMAL 177

Query: 569 YE 570
            +
Sbjct: 178 AQ 179


>gi|68074103|ref|XP_678966.1| exonuclease [Plasmodium berghei strain ANKA]
 gi|56499594|emb|CAI04586.1| exonuclease, putative [Plasmodium berghei]
          Length = 406

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 72/193 (37%), Gaps = 26/193 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
           +    +       +   + K   + I T  +K D  F+   IF              + L
Sbjct: 101 SNDIIAVDFEGTNLG-RYGKICLMQIYTEIEKKDKVFEKYYIF--------------DLL 145

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHD 504
            K +++ +KK  EN+  LK+ H+ + D   L+    I      D +    +L   +  +D
Sbjct: 146 NKSVINSVKKIIENKKTLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLEKKKEND 205

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----------HAIENSNVILQLWL 554
           I  I+   L +          ++I  +   + ++ E          +A++N   +L ++ 
Sbjct: 206 IYQISFLNLLHDYLGFKDDCLNNIKKEMYKNERIWEIRPLSKISIIYALKNVKYLLPIYK 265

Query: 555 LLRPKLIVEKLLH 567
           +    +  +++L 
Sbjct: 266 IFDKLISKKEVLE 278


>gi|225679037|gb|EEH17321.1| exosome component 10 [Paracoccidioides brasiliensis Pb03]
          Length = 827

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 107/356 (30%), Gaps = 55/356 (15%)

Query: 214 LENILINASRIKQK--KRRENILEYAET--ARLSRKLVMLRTDVPITIPLEHLILEDCNG 269
           ++ +L  A     +     + +    E   A LS++    +           +       
Sbjct: 93  IDELLEKADACLDEFTGVIKKLSPSQEQRSAALSKRPATAQFPSVYDFGPSKIS-----K 147

Query: 270 PRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS 329
           P+L     +       +            I P+   +      G     +   +T I+ S
Sbjct: 148 PQL--LFTSRPNNNDTSPFKPLLRSKPHAIAPLSESLGEAGPNGTITFYKHPYETEIRNS 205

Query: 330 QFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS 389
            +                 +        +     +  + T +   + +   + +L+    
Sbjct: 206 PYP----------------QSTYSISPPVEYKSFDATTATFVDTLEGVHSMLAELKEATE 249

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
            +  +                       D  S+      + +S              +E 
Sbjct: 250 IAIDLE--------------------HHDVHSYHGLVCLMQISTRDQDWIVDTLKPWREE 289

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIAS 507
           L  L + F +   LK+ H    D + L R  G+ + G  D    S  L+   RS   +  
Sbjct: 290 LQVLNEVFTDPKILKVLHGSTMDIIWLQRDLGLYIVGLFDTYHGSVALNYPKRS---LKF 346

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           + +K++++  ++I +     +   +     + ++A  +++ +L ++  +R  L+  
Sbjct: 347 LLEKFVNFKAEKIYQMADWRL---RPLLPGMFDYARSDTHYLLYIYDHIRNSLVEN 399


>gi|145634613|ref|ZP_01790322.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
 gi|145268158|gb|EDK08153.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
          Length = 362

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +V T F  L +    D    + +    ++    F     N   LKI H+   D L
Sbjct: 18  DTEFMRVSTYFPKLGLIQLYDGERVSLIDPLAITDFSPFVALLANPKVLKILHSCSEDLL 77

Query: 475 V-LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V L  +    R   D  +M+  +  G S+  +A +AQ++L+    EI K    +  I + 
Sbjct: 78  VFLQEFDQLPRPMIDTQIMARFIGLGASA-GLAKLAQQYLNV---EIDKGATRTNWIKRP 133

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                 ++A  +   +L L+ +L  +L  
Sbjct: 134 LSDIQLQYAAGDVWYLLPLYHILEKELAK 162


>gi|149634974|ref|XP_001513433.1| PREDICTED: similar to DNA-repair protein complementing XP-G cells
            [Ornithorhynchus anatinus]
          Length = 1466

 Score = 51.6 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 65/207 (31%), Gaps = 26/207 (12%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 1058 QELLRLFGIPFIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDVWLFGARHVYKNFFN 1112

Query: 159  KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
            K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 1113 KNKFIEYYQYGDFYNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 1170

Query: 214  LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
            LE +L  +    + ++ + I       ++ +KL                      +    
Sbjct: 1171 LEPLLHFSEWWNEAQKNKKIRPNPHDTKVKKKLRQLQLAPGFPNPAVAEAYLRPVVDESR 1230

Query: 260  EHLILEDCNGPRLISFLKALEFTKLIN 286
               +    +  ++  F +         
Sbjct: 1231 GAFLWGKPDAEKIRQFCQRYFGWNKTK 1257


>gi|297825683|ref|XP_002880724.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326563|gb|EFH56983.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 342

 Score = 51.6 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 75/238 (31%), Gaps = 36/238 (15%)

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
            D ++    K + I      +  D     +   + ++   +          + ++   K 
Sbjct: 45  ADFLNPSPEKKLVIGF--DCEGVDLCRHGKLCIMQIAFSNAIYLVDVIEGGEVLMKACKP 102

Query: 456 FFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGR-SSHDIAS------ 507
             E+ +  K+ H+ K D   L+ ++GI +    D  +   +++        +        
Sbjct: 103 ALESTYITKVIHDCKRDSEALYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVS 162

Query: 508 -IAQ-KWLSYTRKEILKSRKSSIPIDKISDSQVQEH----------AIENSNVILQLWLL 555
            +A  ++   + +E     K  + +    D +   +          A ++   +L L+  
Sbjct: 163 LLADPRYCGISYEE-----KEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHK 217

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID-------QDLLKQVSAEISKNL 606
           +  KL    L H+  R        +  M       D        D LK     + + +
Sbjct: 218 MMGKLNQRSLWHLAVRGAL-YCRCLCCMNDADFA-DWPTVPPIPDNLKSEDQCLEEEI 273


>gi|168060140|ref|XP_001782056.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666467|gb|EDQ53120.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 319

 Score = 51.6 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 65/186 (34%), Gaps = 31/186 (16%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
           +      I      +D        V  +  D +V+      G N L +      K   E+
Sbjct: 23  NPHQPFVIGFDCEGVDLARYGRLCVMQLAFDNAVYLVDAVLGGNALMQSC----KLGLES 78

Query: 460 EHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDI--------ASIA- 509
            + +K+ H+ K D   L+ +Y I +    D  +   +L+  R  + +          +A 
Sbjct: 79  PYIIKVCHDCKRDSEALYFQYNIKLNNVFDTQIAFSLLEEQRGKNWMPDDYISFVDLLAD 138

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LL 566
           +++      E     K  + +    D Q   H         + W ++  ++  +    LL
Sbjct: 139 ERYCGVAYDE-----KEEVRMLLRKDPQFWAH---------RPWTVMMKRVAADDVRFLL 184

Query: 567 HVYERL 572
            +YER+
Sbjct: 185 CIYERM 190


>gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo]
 gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis]
          Length = 879

 Score = 51.6 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 85/253 (33%), Gaps = 39/253 (15%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +   ++++  +  L+     +  +   +  ++      + I+  D             
Sbjct: 317 KLVQTLEELESMITLLKKCSIVAIDVEHHSTQSYRGFVCLVQITGAD------------- 363

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
                    D         + +  L     +   LK+ H  + D L L R +G+ +    
Sbjct: 364 --------DDWVIDPFSIFDEMWRLNDVTTDPRILKVMHGAESDILWLQRDFGVYVVNLF 415

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIE 544
           D +  + VL      H ++S+ + +L        ++   R   IP D ++      +A  
Sbjct: 416 DTLKAADVLCLSCG-HSLSSLVRHFLGIHLDKSYQLADWRIRPIPRDMLT------YATA 468

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI--DQDLLKQVSAEI 602
           +++ +L L+  L+   + + L     + + P +       I  I +   +  L+Q    +
Sbjct: 469 DTHYLLDLYSALKNTALEQDL-----KYNIPGMVGCFDNHIWRIMLASKKVCLRQYRDPV 523

Query: 603 SKNLLSLEENIYD 615
              +    + +  
Sbjct: 524 FNEIPRAFQALRK 536


>gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
          Length = 882

 Score = 51.6 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 85/269 (31%), Gaps = 28/269 (10%)

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTK-IVNTKDIQQWVQKLETIGSASFKI-ITDTMDA 401
              P +  L   +    +      Y   I+  K   +  ++ E I     +      +D 
Sbjct: 167 ATVPLEKSLVTSETDDGFIQYKHPYETEILEAKYPDRVYEQAEPIPWQPVETTEATYVDT 226

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK--EILSYLKKF--- 456
           +      +     D K      V+    D   +    S  + +  +   I+  LK +   
Sbjct: 227 YEGVLEML----EDLKKANEIAVDLEHHDFRTYVGLTSLMQISTREKDWIVDTLKPWREQ 282

Query: 457 -------FENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
                  F +   +K+ H    D + L R  G+ + G  D  +   VL      +   S+
Sbjct: 283 LQVLNEVFADPSIIKVFHGAFMDMVWLQRDLGLYVNGLFDTGMACEVLH-----YPQKSL 337

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----K 564
           A     +   +  K  + +    +    ++  +A  +++ +L ++  +R +L+++     
Sbjct: 338 AFLLKKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYLLYIYDKMRNELVMKSDRGN 397

Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQD 593
               Y          +S     G   D  
Sbjct: 398 PSTDYIEATLQKSKTLSLSRYGGETFDPK 426


>gi|70999828|ref|XP_754631.1| exosome complex exonuclease Rrp6 [Aspergillus fumigatus Af293]
 gi|66852268|gb|EAL92593.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
           Af293]
          Length = 764

 Score = 51.6 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 73/207 (35%), Gaps = 32/207 (15%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P  + + T +   + +++ + +L++    +  +                       D  
Sbjct: 218 QPFESTAATFVDTLEGVKEMLSELKSAKEIAIDLE--------------------HHDVH 257

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
           S+      + +S              +E L  L + F +   LK+ H    D + L R  
Sbjct: 258 SYHGLVSLMQISTRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDL 317

Query: 480 GISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDS 536
           G+ + G  D    +  L+   RS         K+L +        ++  +   +I    S
Sbjct: 318 GLYVVGMFDTYHAACALNYPKRS--------LKFLLHKFVNFEADKRYQMADWRIRPLPS 369

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE 563
            + ++A  +++ +L ++  LR +L+  
Sbjct: 370 GMFDYARSDTHYLLYIYDHLRNELLEN 396


>gi|115665303|ref|XP_001177704.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
 gi|115976409|ref|XP_001186302.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
          Length = 579

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 451 SYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSH-----D 504
           S LKK  E+   LK+ H+ K D   + H +G+ ++   D  +    +    + +      
Sbjct: 436 SSLKKILEHNSILKVIHDCKSDAYSLYHGFGVKLKNVFDTSIAMRTIMEQLNRNRSYQVG 495

Query: 505 IASIAQ---KWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENS 546
             ++ +   +  S+   + +K    +    KI     ++  +A  ++
Sbjct: 496 FKALCELLGEGASHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDA 542


>gi|159127645|gb|EDP52760.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
           A1163]
          Length = 764

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 73/207 (35%), Gaps = 32/207 (15%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P  + + T +   + +++ + +L++    +  +                       D  
Sbjct: 218 QPFESTAATFVDTLEGVKEMLSELKSAKEIAIDLE--------------------HHDVH 257

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
           S+      + +S              +E L  L + F +   LK+ H    D + L R  
Sbjct: 258 SYHGLVSLMQISTRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDL 317

Query: 480 GISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDS 536
           G+ + G  D    +  L+   RS         K+L +        ++  +   +I    S
Sbjct: 318 GLYVVGMFDTYHAACALNYPKRS--------LKFLLHKFVNFEADKRYQMADWRIRPLPS 369

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE 563
            + ++A  +++ +L ++  LR +L+  
Sbjct: 370 GMFDYARSDTHYLLYIYDHLRNELLEN 396


>gi|167623763|ref|YP_001674057.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
 gi|167353785|gb|ABZ76398.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
          Length = 369

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 28/206 (13%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           +  I +   +   V++ +                ++++   I             K   +
Sbjct: 4   FQYIEDDASLAALVEQYQEADLLVLDTEFVRTRTYYARLGLI--------QAYDGKTLAL 55

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGF 486
              L+V                L    +    E  +K+ H+   D  V  RYG       
Sbjct: 56  IDPLAVSN--------------LELFWQLLNKESSVKLLHSCSEDLEVFARYGQCQPTNL 101

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  + + +   G      A + ++ L  +   + K    +  + +        +A  + 
Sbjct: 102 FDSQIAAGLAGMG-HGLGYAKLVEQTLEVS---LDKGESRTDWLKRPLTEAQLNYAANDV 157

Query: 547 NVILQLWLLLRPKLIVEK-LLHVYER 571
             + +L+  L  KL  +  L  VYE 
Sbjct: 158 YYLYKLYPQLVDKLKEQGRLDWVYEE 183


>gi|167583588|ref|YP_001671778.1| 5'-3' exonuclease [Enterobacteria phage phiEco32]
 gi|164375426|gb|ABY52834.1| 5'-3' exonuclease [Enterobacteria phage phiEco32]
          Length = 272

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 36/189 (19%)

Query: 44  MLWKL---LQNSRKESIASHFAVIFDYPAVTFRNEIYP--DYKANRPKIPEMLLPQL--P 96
           M+ +L   +      S  S     F      FR ++    DYKANRP        Q    
Sbjct: 43  MIERLQYKIDTIIARSGCSKVVFYF-SEGGNFRFDVAKQQDYKANRPPGERPFHWQNVGD 101

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
            ++          I++ G EADD +A      ++      I + DKDL+           
Sbjct: 102 YIK-----GKYEYIDVFGREADDALAER----QRRDKNTIICTRDKDLLITPGWHYRWAC 152

Query: 157 TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI----------------PGIG 200
             +++++   +V     +   +    Q L GD  DNIPG                  GIG
Sbjct: 153 GERQKEVPPHYVSD---LVSWQNFFYQMLVGDGTDNIPGCGERKEVMWGGKLQLRRQGIG 209

Query: 201 YKTAALLLQ 209
            K AA LL 
Sbjct: 210 KKAAAKLLA 218


>gi|329847152|ref|ZP_08262180.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
 gi|328842215|gb|EGF91784.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
          Length = 206

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 4/113 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK    +   LK+ H  ++D  +     G+         + S +  +    H +  ++++
Sbjct: 63  LKALLVDPSVLKLFHYGRFDIGMFALHLGVDTSPVYCTKIASKLARTYTDRHGLKDLSRE 122

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +     ++ K+++SS         +   +A  +   +  L   L   L  E 
Sbjct: 123 LVGV---DMSKAQQSSDWGAATLTPEQLAYAASDVLHLHALKDKLDAMLAREG 172


>gi|146421793|ref|XP_001486840.1| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 755

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 108/304 (35%), Gaps = 29/304 (9%)

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIE----TEIDRDTTIKTSQFSSLSDQTS 339
           +++  +  +D +AAN       I   +     I+           T K     S  +  +
Sbjct: 116 MLHLDSEVHDMEAANALARSRIIKPQQFFKTKIDNSELAPFKPKLTSKPHALKSFEESCN 175

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTK----IVNTKDIQQWVQKLETIGSASFKII 395
             +   T      +      +Y I+   Y +    I+  K  + W        +++  + 
Sbjct: 176 LRSGADTEFGKDPDYFPHPYEYEIDTLEYPELVLEILEPKKPKDW------TSTSAIWVE 229

Query: 396 TDT-MDAFHSKP---IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           T++ +    S       IA+  L+  D  S+      + +S    +D        ++ L 
Sbjct: 230 TESDLSQMVSDLSSQTEIAV-DLEHHDYRSYLGIVCLMQIS-SREKDWIIDTLKLRDSLV 287

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
            L + F N + +K+ H    D + L R  G+ +    D    S  L  G     +A + +
Sbjct: 288 VLNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASKKL--GLPRFSLAYLLE 345

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI---VEKLLH 567
            + ++      K  + +    +     +  +A  +++ +L ++  LR +L+    +K+  
Sbjct: 346 NYANFKTS---KKYQLADWRMRPLLGPMLSYARSDTHFLLYVYDQLRNQLLSSGSQKMKE 402

Query: 568 VYER 571
           V   
Sbjct: 403 VLHE 406


>gi|70949124|ref|XP_744002.1| 3'-5' exonuclease [Plasmodium chabaudi chabaudi]
 gi|56523765|emb|CAH76355.1| 3'-5' exonuclease, putative [Plasmodium chabaudi chabaudi]
          Length = 383

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
            + YLK+ FEN++ +K+ H+ + D  +L   Y I++    D  +  Y L   +S  ++  
Sbjct: 112 FVKYLKELFENKNIIKVAHDCREDCSILFNQYNINLNNIFDTQIA-YNLILKKSKKELYQ 170

Query: 508 IAQKWLSY 515
           I+   L Y
Sbjct: 171 ISYDDLLY 178


>gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 743

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 63/402 (15%), Positives = 138/402 (34%), Gaps = 68/402 (16%)

Query: 213 NLENILINASRIKQKKRRENILEYAE----TARLSRKLVMLRTDVPITIP---------L 259
            L  ++   +++  K+RR ++   A+       L   L   RT V   +          L
Sbjct: 58  TLVALMDACTQMLPKRRRTSLSAEADPRSGALHL---LETDRTTVMEAVDSLLESVDSLL 114

Query: 260 EHLILEDCNGPRLIS--FLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIE 317
           + +     +    +S  F   L  ++  NR       DAA+    VL +       +  +
Sbjct: 115 DEVKGRRLDAQEQLSVTFGSELAASQ--NREGGVVVADAASARAGVLRLAHIRRPQLLFD 172

Query: 318 TEIDRDTTIKTSQFSSLSDQT-----------SKINSEQTPQKLFLERLQKLSQYPINND 366
           T +D         +   S Q+           S I +   P+   L R +     P++  
Sbjct: 173 TPVDNSAAPFVPYYYDASGQSHVGVAGQHPFESVIKAFSIPESQMLPRAEV-PPVPLDAC 231

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
             T +  +  +Q  + KL      +  +                       D  S++  T
Sbjct: 232 PLTFVDTSVAMQAMIAKLLLASEIAVDLE--------------------HHDFYSYQGFT 271

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
             + +S    +D        +  +  L   F N   LK+ H  + D   L + + + +  
Sbjct: 272 CLMQIST-REEDFIVDCLKLRSSMGALAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVN 330

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           F D  +    L      H   S+A     + + ++ K  +++    +   +++  +A ++
Sbjct: 331 FFDTGVALQTL------HMPHSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQD 384

Query: 546 SNVILQLWLLLRPKLIVEK--------LLHVYERLDKPMIDV 579
           ++ +L ++  L+  L+  +        L+HVY    +  + +
Sbjct: 385 THFLLYVYDRLKALLLNSEGRASIGSLLVHVYNESKQLSLQI 426


>gi|187932764|ref|YP_001885887.1| exonuclease [Clostridium botulinum B str. Eklund 17B]
 gi|187720917|gb|ACD22138.1| putative exonuclease [Clostridium botulinum B str. Eklund 17B]
          Length = 974

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 84/214 (39%), Gaps = 23/214 (10%)

Query: 381 VQKLET--IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI---DLSVH- 434
           +++L++         I T  +D  + + I I    +   + T+++V         +S++ 
Sbjct: 1   MEQLKSILDNVIYLDIETTGLDENNCEIIEIGAVKIKNSNVTTYEVLIRPKRNVPISIYK 60

Query: 435 ----TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDI 489
                 ++    +   ++I + L  F E+     I HN  +++  L  +   ++    D 
Sbjct: 61  LCQGLKEEELMNSKYLEDIKNELLVFLED--LPLICHNGGFERKFLSCHIPEIKNEIFDS 118

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS--- 546
           M +S +L+  R  +++ S+ +      + E  +  + SI   K+ +S +    I      
Sbjct: 119 MELSAILEPWRKEYNLDSLIKSITILDKDEFHRGLEDSIDTLKVVNSLLCREWIREESKK 178

Query: 547 ------NVILQLWLLLRP-KLIVEKLLHVYERLD 573
                 N+I + +  L+  +     L  +   ++
Sbjct: 179 KNKSLYNIIDKDYEFLKHWEWKEYLLKPILFNIE 212


>gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
 gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
          Length = 471

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 101/346 (29%), Gaps = 43/346 (12%)

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +L +L T++P+ I L     +      +    L  +   +L   +   +  D        
Sbjct: 141 QLALLLTEIPVAIVLVSPAHKIMLYDGQAADILGQVHVPRLSASIFDYFAEDEILGAYKQ 200

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L    TE    A  T  + +  ++  + S  S     I+           R         
Sbjct: 201 LKELRTEIAVRAKGTRGNLNFQLRLKKLSQASGYMILIDDATARIAPEAPRPLIY----- 255

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------ISTLD 415
           + D+       K I+Q +  L+ +    F   T  +     + + I         I   +
Sbjct: 256 DFDATQHFETEKAIEQQL--LKDLSFVVFDTETTGLMPNKDEIVQIGAVRVVNRRIIPGE 313

Query: 416 QKDDTSFKVETIFID-LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             D        I      VH   D    N       +     F  +  + + HN  +D  
Sbjct: 314 TVDQLVNPGRPIPAASTGVHRITDDMVVNAPDPVTATSDFHVFAKDAVI-VAHNAPFDMA 372

Query: 475 VLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
            L RYG     +      D +L+S V+      H + ++  +                  
Sbjct: 373 FLQRYGHMSGHVWDHPILDTVLLSAVVFGAEQEHTLDALCARL----------------- 415

Query: 530 IDKISDSQVQEH-AIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
              I   +   H A+ ++    Q    L P L         + +++
Sbjct: 416 --DIEIPEALRHTALGDAQATAQALCKLLPILTSRGFDTFGKVVEQ 459


>gi|119872195|ref|YP_930202.1| flap endonuclease-1 [Pyrobaculum islandicum DSM 4184]
 gi|166973706|sp|A1RSC7|FEN_PYRIL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|119673603|gb|ABL87859.1| flap endonuclease 1 [Pyrobaculum islandicum DSM 4184]
          Length = 346

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 83/251 (33%), Gaps = 61/251 (24%)

Query: 16  IYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASHFAVIFD 66
            Y + Y      R+ DG P         + ++G F   +  +    +          +FD
Sbjct: 32  AYNSLYQFLASIRQPDGTPLMDRVGRITSHLSGLFYRTINLMEAGIKPVY-------VFD 84

Query: 67  YPAVTFRN---------------EIYPDYKANRPK-----IPEMLLPQLPLV---RLATQ 103
                F+                E+    K  R +     +   +     +V   +    
Sbjct: 85  GKPPEFKLAEIEERRKVKEKAMEEVLKAIKEGRKEDVAKYMKRAVFLTSDMVEDAKKLLT 144

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--- 160
             G+P ++    E +   A         G    + S D D +   SP       V     
Sbjct: 145 YMGVPWVQAPS-EGEAQAAHMAKR----GHCWAVGSQDYDSLLFGSPRLVRNLAVSPRRK 199

Query: 161 ----------EKIDIEHVIKKWGIPP-EKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL 208
                     E I+++ V+K   +   E+++ L  L G   D  P G+PG+G + A  L+
Sbjct: 200 IGEEVIELSPEIIELDAVLKSLRLKNREQLIDLAILLG--TDYNPDGVPGVGPQKALKLV 257

Query: 209 QEYGNLENILI 219
            E+G LE +L 
Sbjct: 258 WEFGGLEKMLE 268


>gi|332307210|ref|YP_004435061.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174539|gb|AEE23793.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 391

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 28/219 (12%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I   + +  +  +L    + +           + K   I I               
Sbjct: 2   QYISITTNETLNAYCAQLAKAEAIAVDTEFVRTRTLYPKLGLIQI--------------- 46

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
                  +  Q     + L     S LK    +E+ +K+ H+   D         I  + 
Sbjct: 47  -------YDGQQIALIDPLEISDFSALKAILTDENIVKVLHSCSEDIETFICALDIVPKP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D    + ++  G S    A + +  L     ++ K    +  + +    +   +A  +
Sbjct: 100 IFDSQFAAAIVGMGASL-GYAKLVEVMLDI---QVDKGESRTDWLARPLSPEQCRYAAYD 155

Query: 546 SNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQM 583
              + QL+  LR K   +     V+  +D      +SQ+
Sbjct: 156 VLYLYQLYPTLRDKARAQGRQAWVFAEMDNLSRKKLSQI 194


>gi|297184397|gb|ADI20513.1| ribonuclease d [uncultured alpha proteobacterium EB080_L58F04]
          Length = 387

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 72/214 (33%), Gaps = 31/214 (14%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T ++  + +  +     +          ++SK   I ++   + DD +  V+ + 
Sbjct: 2   KTITKTDELIAFCEAAKAFDYVTIDTEFLRERTYYSKLCLIQLAVPGKGDDHAVLVDPLA 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFE 487
             L                  L  L   FE+E  +K+ H  + D  +     G+  +   
Sbjct: 62  HGLK-----------------LDALYALFEDETVVKVFHAARQDLEIFCVDAGVLPKPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE-HAIENS 546
           D  + + V   G       ++ +K      K  +          +   ++ Q+ +A+ + 
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVRK----ITKNSIDKSSRFTDWSRRPLTEAQKSYALADV 159

Query: 547 NVILQLWLLLRPKLIV-------EKLLHVYERLD 573
             + Q++  LR K+         E+ L +    +
Sbjct: 160 THLRQVYEFLRAKIEKTGRGPWVEEELQILTNPE 193


>gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299]
 gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299]
          Length = 332

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 30/195 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +   + ++  V  L+     +  +                          SF+  T  I 
Sbjct: 38  VDTPEALEDMVAHLDKSNEMAVDLE--------------------HHSYRSFQGFTCVIQ 77

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           +S            L   I   L     +   +K+ H    D   L R +GI + G  D 
Sbjct: 78  VSTRRMDFVVDALELRGLIRDALGPVMADPRVMKVFHGADMDVQWLQRDFGIYVVGMFDT 137

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSN 547
              + VL+    S  +A +   + S     +   ++  +   ++     ++  +A  +++
Sbjct: 138 GQAARVLE--LPSKGLAYLLDHYCS-----VKADKRFQLADWRVRPLSEEMISYARGDTH 190

Query: 548 VILQLWLLLRPKLIV 562
            +L ++  LR +L  
Sbjct: 191 HLLYVYDRLRQQLDA 205


>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 758

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFIDLSVHTSQ-- 437
                  F + T  + + +   I I         +  + D       +  D +++ +   
Sbjct: 399 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 458

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 459 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 516

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 517 EVSRLLHPEQTRHTLDSLAKKY 538


>gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 234

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 49/121 (40%), Gaps = 4/121 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L+K  E+++  KI H  ++D  ++  Y            + S ++ +   +H +  +  +
Sbjct: 92  LRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLE 151

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            L      + K ++SS   ++    + + +A  +   + ++   L   L  E    + ++
Sbjct: 152 LLDTK---LNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQK 208

Query: 572 L 572
            
Sbjct: 209 C 209


>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 762

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-----ISTLDQKDDTSFKVETIFIDLSVHTSQ-- 437
                  F + T  + + +   I I         +  + D       +  D +++ +   
Sbjct: 403 RGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDGVVIDRFDKFINPHHLLSDTTINLTSIT 462

Query: 438 DSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
           D   +N   +  ++   ++F+++      GHN+++D   L+         I  +   D +
Sbjct: 463 DEMVQNADDENIVIRQFQEFYQD--LPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTL 520

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            +S +L   ++ H + S+A+K+
Sbjct: 521 EVSRLLHPEQTRHTLDSLAKKY 542


>gi|326913904|ref|XP_003203272.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
           [Meleagris gallopavo]
          Length = 1121

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 26/204 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 727 QELLRLFGIPYIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDVWLFGARHVYKNFFS 781

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           +    E         + G+   K++ L  L G   D   GIP +G+ TA  +L E+    
Sbjct: 782 QNKYVEYYQYVDFQNQLGLDRSKLINLAYLLG--SDYTEGIPNVGFVTAMEILNEFPGHG 839

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  A    + ++ + I       R+ +KL                      +    
Sbjct: 840 LEPLLKFAEWWNEAQKNKKIRPNPRDTRVKKKLRELQLSSGFPNPAVAEAYLKPVVDETR 899

Query: 260 EHLILEDCNGPRLISFLKALEFTK 283
                   +  ++  F K      
Sbjct: 900 GSFTWGKPDVEQIREFCKDHFGWT 923


>gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 366

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 105/327 (32%), Gaps = 53/327 (16%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L++    +       M  ++ +   + I+T +              
Sbjct: 2   IINTNKQLNNVIEILKSTSQIAVDTEFYWMRTYYPELCLVQIATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL     S LK  FE+ +  KI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLEDLDFSKLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   +S   + ++ +  L     E+ K  + S    +    +  ++A+++   
Sbjct: 100 TQLAASFL-GTQSQISLKALLKDILDI---EMEKESQFSDWRKRPLSQKQFDYALKDVKH 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
           ++++   L  KL        +                       +LL+    E +     
Sbjct: 156 LIEIKYHLESKLNQTDYKQYFYE---------------------ELLEIQKTEFNT---- 190

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
             ENI++  G     S   Q   IL  + +     +            +       NP  
Sbjct: 191 -VENIHNKIGNIQKFSEKTQKNAILVAQWRESMAQQKNIPVRFIFDNKILYAIAHKNPKS 249

Query: 669 KNILEWRQLSKIKSTYADSLPNHINKR 695
            N  +  +L K+K     S+   IN +
Sbjct: 250 LNSFDTEELKKLKPWIKKSIITVINSK 276


>gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 722

 Score = 51.2 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 23/187 (12%)

Query: 347 PQKLFLERLQKLSQYPINND----SYTKIVNTKDIQQWVQK-LETIGSASFKIITDTMDA 401
           P     E+L+ +    I +      +     T++ +   ++ L  +    F   T  ++ 
Sbjct: 485 PVASAQEQLEAMQVMQIESRPEYFDFDLFQVTEEGRALDERALSDLSYTVFDTETTGLNP 544

Query: 402 FHS-KPIAIAISTLDQKD---DTSFKVETIFIDLS-------VHTSQDSTGKNTLTKEIL 450
               + I I  + +  K      SF+       L           +QD         E+L
Sbjct: 545 AEGDEIIQIGAARIVNKKILRQESFEQLVNPDRLISAASVQIHGITQDRVIGQPRIGEVL 604

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM-RGFEDIMLMSYVLDSGRSSHDI 505
                F ++   + + HN  +D   L       G++  +   D +L+S V+   + SH +
Sbjct: 605 PAFHAFAQD--TVLVAHNAAFDMKFLQLKEAATGLAFHQPVLDTLLLSAVVHPNQESHRL 662

Query: 506 ASIAQKW 512
            +IA+++
Sbjct: 663 EAIAERF 669


>gi|189237006|ref|XP_966807.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
          Length = 947

 Score = 51.2 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 91/258 (35%), Gaps = 35/258 (13%)

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
           + TP +L  E+   +    +++    +I   + + + V+ L      S  +   +  +F 
Sbjct: 234 QPTPSQLIDEK--SVPPKSLSDTPLIEIDKAEQLDELVETLRHCKEFSVDVEHHSYRSFM 291

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                I IST D                     +D        ++ LS L + F     +
Sbjct: 292 GITCLIQISTED---------------------KDYLIDALALRDKLSILNEVFTKNTIV 330

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           KI H    D   L R   + +    D    +  L          +++  +L      +  
Sbjct: 331 KIFHGADKDIEWLQRDLSLYVVNMFDTHQAAKALQ-------YPALSLAFLMKKFCNVTP 383

Query: 523 SRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMID 578
           +++  +   +I     +++ +A E+++ ++ ++ +++ +L     K   +   + +   +
Sbjct: 384 NKQFQLADWRIRPLPDELKSYAREDTHYLIYIYKMMKRELLHKTNKCDKLLRSVIERSTE 443

Query: 579 VVSQMEITGIQIDQDLLK 596
           V  +     I  +   L+
Sbjct: 444 VCKKRYFKPILHEDSHLE 461


>gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis]
 gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis]
          Length = 883

 Score = 51.2 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 87/258 (33%), Gaps = 29/258 (11%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P +L +E+        + +     ++  +D+    +KL      +  +            
Sbjct: 263 PLELSMEKPDIQPILSLQDAPCNFVMKLEDLVALNEKLLQCAEFAVDLE----------- 311

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
                         SF   T  + +S  T +D        +  L  L + F N   +K+ 
Sbjct: 312 ---------HHSYRSFLGLTCLMQISTRT-EDYIIDVLELRSNLYILNESFTNPSIIKVF 361

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D   L + +G+ +    D    + +L+     H +  + + +      E  K  +
Sbjct: 362 HGADSDIEWLQKDFGLYIVNMFDTHQAARILN--LGRHSLDHLLRLY---CNVESDKRYQ 416

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQM 583
            +    +    ++ E+A  +++ +L ++  +R  L        ++ + + +   D+  + 
Sbjct: 417 LADWRIRPLPEEMLEYARVDTHYLLYIYDKMRIALLDAANGQPNLLQLVWQRSKDICLKR 476

Query: 584 EITGIQIDQDLLKQVSAE 601
               I  ++  L     +
Sbjct: 477 FTKLIFTEESYLDLYQKQ 494


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score = 51.2 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 80/236 (33%), Gaps = 38/236 (16%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S +        K++N         KL+      F + T  + AF+++ +      L  
Sbjct: 381 YGSTFSTYRSKIEKVINFNGKNYIFDKLK---FVIFDLETTGLSAFYNEIVEFGAVVLQN 437

Query: 417 K----DDTSFKVETIFIDLSV----HTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGH 467
                    F   T  I  ++      SQ    +  ++ EI L  + K  ++   + + H
Sbjct: 438 GIEIEKHQFFIKPTGKIPPAITKITGISQKMIDETAISWEIALEKITKIIKD--SVLVAH 495

Query: 468 NIKYDKLVL-----HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           N  +D   L      +   S++    D + +S  L+    SH + ++A+++         
Sbjct: 496 NAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLKNVAKRY--------- 546

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                    +   D ++   A  ++ ++  +W     +L  + +  +    +    
Sbjct: 547 ---------EIEYDEEIAHRADYDAKILTTIWKNFLAELKSQNINDLTSLSEIKNS 593


>gi|158289252|ref|XP_311006.4| AGAP000139-PA [Anopheles gambiae str. PEST]
 gi|157018965|gb|EAA06413.4| AGAP000139-PA [Anopheles gambiae str. PEST]
          Length = 1135

 Score = 51.2 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
           +     +  T+T R         +   +  +G ++R    +PP  +L+ AD    EL I 
Sbjct: 738 IIPQVVVCGTLTRRAMEPTWMTASNAQRERVGSELRAMVQAPPGYRLVGADVDSQELWIA 797

Query: 759 AHI----AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS- 813
           + +      +         +L   +    ++  V  + V    R HAK +N++ IYG   
Sbjct: 798 SVLGDAGTGLHGGTPFGWMTLSGTKATRTDMHSVTAQAVGI-SRDHAKVLNYARIYGAGQ 856

Query: 814 --PFRLATQLRIPRSEAAD 830
               RL  Q     + A  
Sbjct: 857 QFAERLLKQFNPTLTGAEA 875


>gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi]
 gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi]
          Length = 206

 Score = 51.2 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 49/121 (40%), Gaps = 4/121 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L+K  E+++  KI H  ++D  ++  Y            + S ++ +   +H +  +  +
Sbjct: 64  LRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLE 123

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            L      + K ++SS   ++    + + +A  +   + ++   L   L  E    + ++
Sbjct: 124 LLDTK---LNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQK 180

Query: 572 L 572
            
Sbjct: 181 C 181


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score = 51.2 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 80/236 (33%), Gaps = 38/236 (16%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S +        K++N         KL+      F + T  + AF+++ +      L  
Sbjct: 382 YGSTFSTYRSKIEKVINFNGKNYIFDKLK---FVIFDLETTGLSAFYNEIVEFGAVVLQN 438

Query: 417 K----DDTSFKVETIFIDLSV----HTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGH 467
                    F   T  I  ++      SQ    +  ++ EI L  + K  ++   + + H
Sbjct: 439 GIEIEKHQFFIKPTGKIPPAITKITGISQKMIDETAISWEIALEKITKIIKD--SVLVAH 496

Query: 468 NIKYDKLVL-----HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           N  +D   L      +   S++    D + +S  L+    SH + ++A+++         
Sbjct: 497 NAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLKNVAKRY--------- 547

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                    +   D ++   A  ++ ++  +W     +L  + +  +    +    
Sbjct: 548 ---------EIEYDEEIAHRADYDAKILTTIWKNFLAELKSQNINDLTSLSEIKNS 594


>gi|166085101|dbj|BAF99815.1| flap endonuclease-1 [Aeropyrum pernix]
 gi|166085103|dbj|BAF99816.1| flap endonuclease-1 [Aeropyrum pernix]
          Length = 401

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 80/212 (37%), Gaps = 34/212 (16%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEK-----EGFAVTIISTDKDLMQLVS---- 149
           +    A G+P ++    E +   A      +      + +   +  + + +  L      
Sbjct: 190 KELLDAMGMPWVQAPA-EGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRR 248

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG-IPGIGYKTAAL 206
             P    Y  +K E I++E ++ K GI  E+++ +  L G   D  PG + G G KTA  
Sbjct: 249 KLPGRDQYVEIKPEIIELETLLSKLGITREQLIAVGILLG--TDYNPGGVRGYGPKTALR 306

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L++  G+   +L +  R   +   + + +  E       L    TD      +E      
Sbjct: 307 LVKSLGDPMKVLASVPR--GEYDPDYLRKVYE-----YFLNPPVTD---DYKIE---FRK 353

Query: 267 CNGPRLISFL-KALEFT-----KLINRVATTY 292
            +  ++   L +  +F      + + R+A  Y
Sbjct: 354 PDRDKVREILVERHDFNPERVERALERLAKAY 385


>gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 206

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 49/121 (40%), Gaps = 4/121 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L+K  E+++  KI H  ++D  ++  Y            + S ++ +   +H +  +  +
Sbjct: 64  LRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLE 123

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            L      + K ++SS   ++    + + +A  +   + ++   L   L  E    + ++
Sbjct: 124 LLDTK---LNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQK 180

Query: 572 L 572
            
Sbjct: 181 C 181


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
          Length = 1444

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           LE      F + T  + A +     I ++ +  K+         FID     S  +    
Sbjct: 422 LEDATYVVFDVETTGLSAIYDSI--IELAAVKMKNGVVIDKFEEFIDPGHPLSATTIQLT 479

Query: 444 TLTKE-------ILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RYGISM--RGFEDI 489
            +T +       +   LK+F E ++  + + HN  +D   L+      GI    +   D 
Sbjct: 480 GITDDMVRGSKSVEQVLKEFHEFSKDCILVAHNASFDMGFLNTGYENVGIERTEQPVIDT 539

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + +S +L     SH + ++A+++
Sbjct: 540 LELSRMLHPQLKSHRLNTLAKRY 562


>gi|119491955|ref|XP_001263472.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
           NRRL 181]
 gi|119411632|gb|EAW21575.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
           NRRL 181]
          Length = 765

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 77/205 (37%), Gaps = 28/205 (13%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
            P  + + T +   + +++ + +L++    +  +                       D  
Sbjct: 218 QPFESTAATFVDTLEGVKEMLSELKSAKEIAIDLE--------------------HHDVH 257

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
           S+      + +S              +E L  L + F +   LK+ H    D + L R  
Sbjct: 258 SYHGLVSLMQISTRDKDWVVDTLKPWREELQILNEVFADPGILKVLHGSSMDIIWLQRDL 317

Query: 480 GISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
           G+ + G  D    +  L+   RS   +  + QK++++   E  K  + +    +   S +
Sbjct: 318 GLYVVGMFDTYHAACALNYPKRS---LKFLLQKFVNF---EADKRYQMADWRIRPLPSGM 371

Query: 539 QEHAIENSNVILQLWLLLRPKLIVE 563
            ++A  +++ +L ++  LR +L+  
Sbjct: 372 FDYARSDTHYLLYIYDHLRNELLEN 396


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           haemolyticus JCSC1435]
          Length = 1438

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 16/145 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------ 433
           + L+      F + T  +   + + I +A   +   +  D   +       LS       
Sbjct: 415 RDLKEATYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPHEKLSETIINLT 474

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFE 487
           H + D        +E+L+  K++  +   + + HN  +D         R G      G  
Sbjct: 475 HITDDMLTDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVI 532

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + +S  +++    H +  +A+K+
Sbjct: 533 DTLELSRTINTEYGKHGLNFLAKKY 557


>gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 719

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 38/225 (16%)

Query: 379 QWVQK-LETIGSASFKIITDTMDAFHS-KPIAIAIS-------TLDQKDDTSFKVETIFI 429
           +W ++ L+ +    F   T  +      + IAI            D+  +   K      
Sbjct: 513 EWAERALDQLSCVVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKPCRAIP 572

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKF--FENEHFLKIGHNIKYDKLVL----HRYGIS- 482
           D +      S        EI   L+ F  F  E  + + HN  +D   L     R G++ 
Sbjct: 573 DSATRFHGISNEDVARAPEIGPVLRAFSRFIGEESVLVAHNAAFDMGFLRRAQARAGLAF 632

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH- 541
            +   D +L+S  L      H +  +A++                     +     + H 
Sbjct: 633 PQPVLDTLLLSVYLHDHSPDHTLEGVAER---------------------LGVEVQKRHS 671

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           A+ ++ V   ++  + P L    ++ + + +      V  + E  
Sbjct: 672 ALADARVTADVFARMIPLLRERGVVTLGQAIQASEQVVTVRREQA 716


>gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue [Leishmania infantum]
          Length = 743

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/401 (14%), Positives = 138/401 (34%), Gaps = 66/401 (16%)

Query: 213 NLENILINASRIKQKKRRENILEYAE----TARLSRKLVMLRTDVPITIP---------L 259
            L  ++   +++  K+RR ++   A+       L   L   RT V   +          L
Sbjct: 58  TLVALMDACTQMLPKRRRTSLSAEADPRSGALHL---LETDRTTVMEAVDSLLESVDSLL 114

Query: 260 EHLILEDCNGPRLIS--FLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIE 317
           + +     +    +S  F   L  ++  NR       DAA+    VL +       +  +
Sbjct: 115 DEVKGRRLDAQEQLSVTFGSELAASQ--NREGGVVVADAASARAGVLRLAHIRRPQLLFD 172

Query: 318 TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL----------QKLSQYPINNDS 367
           T +D         +   S Q+    + Q P +  ++             ++   P++   
Sbjct: 173 TPVDNSAAPFVPYYYDASGQSHVGVAGQHPFESLIKAFSIPESQMLPRAEVPPVPLDACP 232

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
            T +  +  +Q  + KL      +  +                       D  S++  T 
Sbjct: 233 LTFVDTSVAMQAMIAKLLLASEIAVDLE--------------------HHDFYSYQGFTC 272

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGF 486
            + +S    +D        +  +  L   F N   LK+ H  + D   L + + + +  F
Sbjct: 273 LMQIST-REEDFIVDCLKLRSSMGALAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNF 331

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  +    L      H   S+A     + + ++ K  +++    +   +++  +A +++
Sbjct: 332 FDTGVALQTL------HMPHSLAFAVDHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDT 385

Query: 547 NVILQLWLLLRPKLIVEK--------LLHVYERLDKPMIDV 579
           + +L ++  L+  L+  +        L+HVY    +  + +
Sbjct: 386 HFLLYVYDRLKALLLNSEGRASIGSLLVHVYNESKQLSLQI 426


>gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
 gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
          Length = 230

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 41/222 (18%)

Query: 392 FKIITDTMDAFHSK-PIAIAISTLDQKDDTSFKVETIFIDL--------SVHTSQDSTGK 442
           F   T   D       + I    L  +  T       +           +VH   DS  +
Sbjct: 6   FDTETTGFDPASGDRLVEIGCIELLNRVPTGRTFHAYYNPQRSMPAAAEAVHGLSDSFLR 65

Query: 443 N-TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-------GISMRGFEDIMLMSY 494
           +  L    +  L  F E+ H   + HN ++D   L+          +SM    D + ++ 
Sbjct: 66  DKPLFSHGVEELLAFLEDSHL--VAHNARFDFGFLNHELRLCGLPEVSMARMIDTVAIAR 123

Query: 495 VLDSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPIDKISDS 536
            L  G   H + ++  ++                  L+    E+   R+  + + +  + 
Sbjct: 124 QLHPGA-KHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELTGGRQIGLGLAQEEEK 182

Query: 537 QVQ--EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKP 575
           +V   E A E +   ++   +        E+       L+KP
Sbjct: 183 RVANMELAAEVAVRPVRPARVFAASAEELERHAAFVATLEKP 224


>gi|156084190|ref|XP_001609578.1| Rad2 endonuclease [Babesia bovis T2Bo]
 gi|154796830|gb|EDO06010.1| Rad2 endonuclease, putative [Babesia bovis]
          Length = 1002

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K +R    +  + +   V      FG+P I     EA+   A         G    +IS 
Sbjct: 672 KISRMDRSQYRMDEWDKVPALLDLFGVPFIVAPS-EAEAQCAHLN----NTGLCFGVISD 726

Query: 141 DKDLMQLVSPTTCLYDTVKE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
           D D +   +             E    + ++ + G+   ++  L  L G   D  PG+ G
Sbjct: 727 DSDTLAFGAKRVFKNFYSGNVFEVYVADRILHELGLGRNEIALLAILCG--CDYTPGVRG 784

Query: 199 IGYKTAALLLQEYGNLENILI 219
           IG   A  +++ +   +++  
Sbjct: 785 IGVVNALEVIKAFPTFDDLYE 805


>gi|148642785|ref|YP_001273298.1| flap endonuclease-1 [Methanobrevibacter smithii ATCC 35061]
 gi|166973703|sp|A5UL52|FEN_METS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|148551802|gb|ABQ86930.1| DNA repair flap structure-specific 5'-3' endonuclease
           [Methanobrevibacter smithii ATCC 35061]
          Length = 327

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 13/130 (10%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +      GIP IE  G E +   A       + G A  + S D D +   +        +
Sbjct: 136 KKLLTMMGIPYIEAYG-EGEAQAAYLV----ENGDAWAVASQDYDCLLFGAKRVVRNLAI 190

Query: 159 KE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
                  E  +++ V+ +  I  E+++ +  L G   D   G+ G+G KTA  L ++ G 
Sbjct: 191 NSNLGDLEYYNLKRVLDELDINREQLIDMGILIG--TDFSEGLKGVGAKTALKLAKK-GE 247

Query: 214 LENILINASR 223
           LEN L     
Sbjct: 248 LENKLAKLQE 257


>gi|82753293|ref|XP_727619.1| 3'-5' exonuclease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483550|gb|EAA19184.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii]
          Length = 410

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
              YLK+ FEN++ +K+ H+ + D  +L   Y I++    D  +  Y L   +S  ++  
Sbjct: 112 FAKYLKELFENKNIIKVTHDCREDCSILFNQYNINLNNIFDTQIA-YNLILKKSKKELYQ 170

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKI---SDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           I+  +     K +  +    I   KI    +    +  I    +   +  +L  K ++  
Sbjct: 171 IS--YDDLLYKCLFLNNNHKIYFHKIISLDNKIYLKRPISKELIHYAVQDVLYLKPLMLN 228

Query: 565 LLHVYERLD 573
           L+     ++
Sbjct: 229 LVETLSNIE 237


>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 891

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 65/198 (32%), Gaps = 27/198 (13%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           DSY  +     +++  + L      +      ++ +F      I IST +          
Sbjct: 116 DSYVWVETELQLKELAEILAKEKVFAVDTEQHSLRSFLGFTALIQISTHE---------- 165

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                      +D      +  + +S L+  F   +  K+ H    D L L R + I + 
Sbjct: 166 -----------KDFLVDTIVLHDAMSILRPVFSEPNICKVFHGADNDVLWLQRDFHIYVV 214

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D      VL   +    +A + +        ++L   +      +    ++  +A  
Sbjct: 215 NMFDTAKACEVL--SKPQRSLAYLLETVCGVATNKLL---QREDWRQRPLSEEMVRYART 269

Query: 545 NSNVILQLWLLLRPKLIV 562
           +++ +L +   L  +L  
Sbjct: 270 DAHYLLYIADSLTAELKQ 287


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU121]
          Length = 1438

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS--------- 432
           + L+      F + T  +   + K I +A +      +   K E                
Sbjct: 415 RDLKDATYVVFDVETTGLSNQYDKIIELA-AVKVHNGEIIDKFERFSNPHEKLSETIINL 473

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGF 486
            H + D        +++L+  K++  +   + + HN  +D         R G      G 
Sbjct: 474 THITDDMLTDAPEIEDVLTDFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGV 531

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  +++    H +  +A+K+
Sbjct: 532 IDTLELSRTINTEYGKHGLNFLAKKY 557


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 20/145 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           L+      F + T  + + + +   I ++ +  ++         FI+   H S       
Sbjct: 415 LDLATYVVFDVETTGLSSVYDRI--IELAAVKMRNGEVIDTFEAFINPGYHLSAMITELT 472

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM--RGFE 487
                         E+++   +F  ++  + + HN  +D   L     R G+ +  +   
Sbjct: 473 GITDAMLADAPPEAEVMARFAEF--SKDTILVAHNASFDMGFLNKTYARLGMPVPDQPVI 530

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + +S +++    SH +  +A+ +
Sbjct: 531 DTLELSRLVNPDMRSHRLNVLAKHY 555


>gi|254461790|ref|ZP_05075206.1| ribonuclease D [Rhodobacterales bacterium HTCC2083]
 gi|206678379|gb|EDZ42866.1| ribonuclease D [Rhodobacteraceae bacterium HTCC2083]
          Length = 385

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 72/209 (34%), Gaps = 23/209 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T+ + ++ ++ +     +          ++SK   + ++     D     V+ +  
Sbjct: 3   TITTTEALAEFCEEAKKHAYVTVDTEFLRERTYYSKLCLVQLAMPGTDDSNGCLVDPLVE 62

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
            +S                 L  L   F +   +K+ H  + D  +     G+      D
Sbjct: 63  GIS-----------------LEPLYDLFRDTSVVKVFHAARQDIEIFQVDAGVIPTPLFD 105

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + S V   G       ++ +K     ++EI KS + +    +       ++A+ +   
Sbjct: 106 TQVASMVCGFGEQV-GYETLVRK---IAKQEIDKSSRFTDWSRRPLSDAQAKYALADVTH 161

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           + Q++  L  KL  +   H  +  +  ++
Sbjct: 162 LRQVYEFLAKKLKDQGRSHWVDE-EMKIL 189


>gi|157962268|ref|YP_001502302.1| ribonuclease D [Shewanella pealeana ATCC 700345]
 gi|157847268|gb|ABV87767.1| ribonuclease D [Shewanella pealeana ATCC 700345]
          Length = 369

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 62/207 (29%), Gaps = 28/207 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  I +   +   V++ +                ++++   I             K   
Sbjct: 3   AFQYIEDDASLAALVEQYQDADLLVLDTEFVRTRTYYARLGLI--------QAYDGKTLA 54

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
           +   L+V                L    +    E  +K+ H+   D  V  RYG      
Sbjct: 55  LIDPLAVSN--------------LELFWQLLSKESSVKLLHSCSEDLEVFARYGNCQPTN 100

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  + + +   G      A + ++ L  +   + K    +  + +        +A  +
Sbjct: 101 LFDSQIAAGLAGMG-HGLGYAKLVEQTLEVS---LDKGESRTDWLKRPLTEAQLNYAAND 156

Query: 546 SNVILQLWLLLRPKLIVEK-LLHVYER 571
              + +L+  L   L  +  L  VYE 
Sbjct: 157 VYYLYKLYPQLVKLLEEQGRLDWVYEE 183


>gi|282165429|ref|YP_003357814.1| flap structure-specific endonuclease [Methanocella paludicola
           SANAE]
 gi|282157743|dbj|BAI62831.1| flap structure-specific endonuclease [Methanocella paludicola
           SANAE]
          Length = 339

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 22/140 (15%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +      G+P +     E +   A        +     + S D D +   +P      T+
Sbjct: 135 KELLGYMGMPFLIAPS-EGEAQAAYMVQKGAAD----FVGSQDYDSLLFGAPRMVRNVTI 189

Query: 159 KEEK---------------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
              +               ++++ V++   +  E+++ +  L G   D  PGI  +G KT
Sbjct: 190 TGRRKIPRRGVYVDVKPQIVELKEVLETLEVTREQLIDMGILVG--TDFNPGIYKVGPKT 247

Query: 204 AALLLQEYGNLENILINASR 223
           A  L++++ ++  IL    +
Sbjct: 248 ALKLVKKHPDMRAILDELGQ 267


>gi|261349732|ref|ZP_05975149.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
 gi|288861687|gb|EFC93985.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
          Length = 327

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 13/130 (10%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +      GIP IE  G E +   A       + G A  + S D D +   +        +
Sbjct: 136 KKLLTMMGIPYIEAYG-EGEAQAAYLV----ENGDAWAVASQDYDCLLFGAKRVVRNLAI 190

Query: 159 KE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
                  E  +++ V+ +  I  E+++ +  L G   D   G+ G+G KTA  L ++ G 
Sbjct: 191 NSNLGDLEYYNLKRVLDELDINREQLIDMGILIG--TDFSEGLKGVGAKTALKLAKK-GE 247

Query: 214 LENILINASR 223
           LEN L     
Sbjct: 248 LENKLAKLQE 257


>gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL
           Brener]
 gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
          Length = 768

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 96/284 (33%), Gaps = 29/284 (10%)

Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
           L F   +   +   D     + P +   +  +N           +   +      +    
Sbjct: 180 LTFVSELQHSSFAVDGGGCVLRPQLTFEHPVDNSPTPFCPVYYDEKGERHVGQPGIHPFA 239

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
             I +   P++  + R++     P+       +  T D++  V  L      +  +    
Sbjct: 240 ELIKNMSMPEEQLIRRVET-PYLPLAQCPLRFVDATVDLEDVVALLLKEKEIAVDLE--- 295

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
                                 S++  T  + +S   S+D        +  +  L   F 
Sbjct: 296 -----------------HHSFYSYQGFTCLMQIST-RSEDILIDCLKLRSSMHLLAPVFL 337

Query: 459 NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           N + LK+ H  + D   L + +G+ +  F D  +    L +    H +A     +    +
Sbjct: 338 NPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIA---LQTLHMPHGLAFAVDHF---CQ 391

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            ++ K  +++    +   +++  +A ++++ +L ++  L+  L+
Sbjct: 392 VKLDKKYQTADWRIRPIPAEMATYARQDTHFLLYVYDRLKTLLL 435


>gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102]
          Length = 831

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 86/228 (37%), Gaps = 33/228 (14%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
           ++I++ + P+ +F +R    SQ P +  + T +   + + + +Q+L      +  +    
Sbjct: 195 TEISNMKYPEWVFQKRDPMPSQPPDSTKA-TWVDTYEGVLEMLQELRKAKEIAVDLE--- 250

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
                              D  ++      + +S              +  L  L   F 
Sbjct: 251 -----------------HHDFRTYTGLVCLMQVSTRDQDWIVDTLQPWRHKLEVLNDVFA 293

Query: 459 NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT 516
           N   +K+ H    D + L R  G+ + G  D      +L+  G+S   +A +  K++ + 
Sbjct: 294 NPSIVKVFHGAYMDMVWLQRDLGLYVNGLFDTYFACDLLNYPGKS---LAFLLSKFVGFD 350

Query: 517 RKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                  ++  +   +I     ++  +A  +++ +L ++  +R +LI 
Sbjct: 351 AD-----KQYQLADWRIRPIPEEMLYYARSDTHYLLYIFDNVRNELIE 393


>gi|329764928|ref|ZP_08256517.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138597|gb|EGG42844.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 339

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 84/223 (37%), Gaps = 41/223 (18%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATY-----TYIAEKEGFAVTIISTDKDLMQLVS---- 149
           +     FGIP I+    E + + A        Y +  + F   +    + +    +    
Sbjct: 136 KQILTYFGIPYIDAPS-EGEAMAAHLTNTGQAYASASQDFDSILCGAKRLIRNFTNSGRR 194

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P    Y  ++ E I+ +  +   G+  E++V +  L G   D  P G   IG KTA  
Sbjct: 195 KIPNRNTYVEIEPEIIETQKTLDALGVTREQLVDIGILIG--TDFNPNGFDRIGPKTALK 252

Query: 207 LLQEYGNLENIL---INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           +++++  LE+I         I  ++ R+  LE                  PI   ++ ++
Sbjct: 253 MIKQHSRLEDIPQIQEQLLEIDYQQIRKIFLE------------------PIVAEVDEIV 294

Query: 264 LEDCNGPRLISFLKALEFT-----KLINRVATTYDCDAANIEP 301
               +   + ++LK   F+       +NR+    +  + N++ 
Sbjct: 295 FGQVDYEGMTNYLKERSFSEDRIQSSLNRLKKALEKKSQNLDQ 337


>gi|281350378|gb|EFB25962.1| hypothetical protein PANDA_002828 [Ailuropoda melanoleuca]
          Length = 1192

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 781 QELLRLFGIPYIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 835

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 836 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 893

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLR----------TDVPITIPLEH-- 261
           LE +L  +    + ++ + I       ++ +KL  L+           D  +   ++   
Sbjct: 894 LEPLLKFSEWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVVDDSR 953

Query: 262 --LILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 954 GSFLWGKPDLDKIREFCQRYF 974


>gi|307107102|gb|EFN55346.1| hypothetical protein CHLNCDRAFT_134358 [Chlorella variabilis]
          Length = 2164

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 19/196 (9%)

Query: 742  TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV------AAEIFGVNIEKVSP 795
               L+  +   +EL +LAH++    L     +    ++        AA    V       
Sbjct: 1875 GGLLVRVELQHLELAVLAHLSGQPELQAACRSGAGAYQHTSNCWAAAAGQVEVPGAGNGG 1934

Query: 796  QMRRH------------AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843
                             A  +   + +  S  +L   LR PR  AA  ++ +   FP + 
Sbjct: 1935 DAGGALGPPPLLITAGVATAVARCLAHSWSSKKLGWLLRCPRHAAAAAVESFLAAFPRLK 1994

Query: 844  EYIEKTKNFVRQNGYVETIFGRRIHYDEI-NSPKSSIRNINERAAINAPIQGSAADITRR 902
             Y+ +            T+ GR+  +  +     +  R    +A +   + GS AD+ + 
Sbjct: 1995 AYLAEAAAAAEAACCAATLAGRQQQFGALKRQEDAMGRGKLHKAILVHVLGGSLADVMKA 2054

Query: 903  AMISVHKSLEDHKLAT 918
            A++S H +L     + 
Sbjct: 2055 AVVSTHAALAGLGPSC 2070


>gi|254466167|ref|ZP_05079578.1| ribonuclease D [Rhodobacterales bacterium Y4I]
 gi|206687075|gb|EDZ47557.1| ribonuclease D [Rhodobacterales bacterium Y4I]
          Length = 385

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 68/196 (34%), Gaps = 24/196 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +  T+++Q +          +          ++SK   I ++     +D +  V+ + 
Sbjct: 2   KTLTTTEELQAFCDAAAQHPYVTVDTEFLRERTYYSKLCLIQLAFSGNGEDDAVLVDPLA 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
             +S                 L  L   F +E+ +K+ H  + D  +     G+  +   
Sbjct: 62  DGIS-----------------LEPLYALFRDENVVKVFHAARQDLEIFWVDAGVFPKPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE-HAIENS 546
           D  + + V   G  +    ++ +K      K+ L          +   S+ Q+ +A+ + 
Sbjct: 105 DTQVAAMVCGFGEQA-GYETLVRK----IVKQGLDKTSRFTDWSRRPLSEAQKTYALADV 159

Query: 547 NVILQLWLLLRPKLIV 562
             + +++  L  +L  
Sbjct: 160 THLRKIYEFLAAELEK 175


>gi|254439069|ref|ZP_05052563.1| ribonuclease D [Octadecabacter antarcticus 307]
 gi|198254515|gb|EDY78829.1| ribonuclease D [Octadecabacter antarcticus 307]
          Length = 395

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 24/207 (11%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +            I  T ++  +  +       +          ++SK   I ++ +   
Sbjct: 1   MWAQQYEKAQMKTITTTAELATYCAQAAKYPYVTVDTEFLRERTYYSKLCLIQLAYMGDG 60

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           DD +  ++ +   L                  L+ L   F++E+ +K+ H  + D  +  
Sbjct: 61  DDDAVLLDPLANGLD-----------------LAPLYDLFKDENVVKVFHAARQDLEIFF 103

Query: 478 -RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
              GI  +   D  + + V   G  +    ++ +K      K+ +          +   S
Sbjct: 104 VDQGIIPKPLFDTQVAAMVCGFGEQA-GYETLVRK----IAKDNVDKSSRFTDWSRRPLS 158

Query: 537 QVQE-HAIENSNVILQLWLLLRPKLIV 562
             Q+ +A+ +   +  ++  L  +L  
Sbjct: 159 DAQKTYALADVTHLRVIYEYLSAELDK 185


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 132/405 (32%), Gaps = 59/405 (14%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           ++L+      F   T  + A ++K   I ++ +  KD         FID     SQ +  
Sbjct: 421 EELKHATYVVFDTETTGLSAQYNKV--IELAAVKMKDGEKIGEFEEFIDPGHPLSQTTIN 478

Query: 442 KNTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGI-SMR-G 485
              +T          +E+    ++F +    + +GHN  +D   ++    R+G+  ++  
Sbjct: 479 LTHITDAMVRGSKTEEEVFKLFREFCK--GCIIVGHNATFDVDFMNTGYLRHGMPEIKEP 536

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
           + D + ++ +L S      + ++A++    L +  + I  +  +     K+     ++  
Sbjct: 537 WVDTLPLARILYSDMKRFTLDTLAKRLKVDLEHHHRAIYDAEATGYIFYKMLADAREQFD 596

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602
           I                ++       Y++       V+++ +        D LK +    
Sbjct: 597 IL-------YHDDFNKHMVQP---DTYKQQHPFHAIVLAKTQ--------DGLKNLFKLA 638

Query: 603 SK-------NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK---FPSGAKTKTGQWKT 652
           S         +  +  ++ +   E   + S    G++    ++     + AK K   +  
Sbjct: 639 SDSMVNHFYRVARVPRSVLEKYREGLLVGSGCADGEVFTAMMQKGYETAKAKAKNYDYLE 698

Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS-------- 704
                      +  ++K+  E   + K     A+ L   I                    
Sbjct: 699 IQPKALYAPLLERELVKDEEELEDIIKNMVKLAEELDKPIVASGDVHFMNKEDAIYRKIL 758

Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
           + S       +   NL +   +T        AF+ P   K +  D
Sbjct: 759 IHSQGGANPLNRLKNLPDAHFRTTDEMLDEFAFLGPELAKKVVVD 803


>gi|315123522|ref|YP_004065528.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
           SM9913]
 gi|315017282|gb|ADT70619.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
           SM9913]
          Length = 376

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 63/203 (31%), Gaps = 27/203 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I    ++  +V++++     +           + +   I +   +           
Sbjct: 2   HYQLIQTQNELNTFVEQIKNKPILAIDTEFMRRRTLYPEVALIQVYDGE----------- 50

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG 485
                  H +           +    LK    +   LK+ H+   D  V  +Y G     
Sbjct: 51  -------HLALIDPLAELSLFDFWQILK----DPKVLKVLHSPSEDIEVFQKYAGFVPYP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D      +L  G +    A + +  L+    EI KS   +  + +    +  E+A  +
Sbjct: 100 LFDTQFALQLLGEG-NCMGFALMVKTLLNI---EIDKSESRTNWLQRPLTQKQLEYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEKLLHV 568
           +  +L  + L+   +    L  +
Sbjct: 156 TYHLLPCFELIIDSIKAADLFDI 178


>gi|157124837|ref|XP_001660547.1| hypothetical protein AaeL_AAEL010007 [Aedes aegypti]
 gi|108873835|gb|EAT38060.1| conserved hypothetical protein [Aedes aegypti]
          Length = 949

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 33/223 (14%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P K  L+ ++      + +     I     +   +++L+     +  +   +   +   
Sbjct: 249 EPLKEALKEVEPEEPLKLESTPLDIIDKESQLPGLLKELKAAKELAIDLEHHSYRTYQGF 308

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + IST                      S+D        +E L  L + F N   +K+
Sbjct: 309 TCLMQIST---------------------RSKDYIIDTLALREELHILNEVFTNPKVVKV 347

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL 521
            H    D   L R   + +    D    + VL+   S   +  + + + +       ++ 
Sbjct: 348 LHGAISDIEWLQRDLSLYIVNMFDTGEAAKVLE--FSRIGLQFLLKHYCNIDTDKAYQLA 405

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             R   IP + I      E+A ++++ +L ++  +R +LI + 
Sbjct: 406 DWRIRPIPHNFI------EYARKDTHYLLYIYDRMRNELIAKG 442


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH--------T 435
           LE      F   T  ++A     I IA   +   +        I   + +          
Sbjct: 411 LEDAEFVVFDTETTGLNAREHTLIEIAAVKVRGGELVDHYTSLIDPGVPISPKIQELTGI 470

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM--RGFEDI 489
           + D         E+L   +KF      + + HN ++D   L     + G         D 
Sbjct: 471 TSDMVKGQPGLSEVLEAFRKFAA--GAVLVAHNAEFDMGFLQSAARKLGQPPWDHPVLDT 528

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++ VL     +H + ++ QK+
Sbjct: 529 LALARVLYPRERNHRLKTLTQKF 551


>gi|258614816|ref|ZP_05712586.1| DNA polymerase I [Enterococcus faecium DO]
          Length = 40

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975
           PE+E+ +  +++   ME+A    ++L VPL  +      W E 
Sbjct: 1   PEKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYEA 39


>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 406

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 36/208 (17%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           N +Y  +   K +   +  L      S    +     ++ K   I I             
Sbjct: 4   NSNYILVDTAKALDLALINLRQSKIMSIDTESSGYYTYYPKVCLIQI------------- 50

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEI----LSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
                        +S GKN L   +    LS L   FE+ + LKI H+ + D   L R +
Sbjct: 51  -------------NSNGKNYLIDPLKITNLSALGPLFEDPNILKIFHSAQDDIKALKRDF 97

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G       D M+ S           ++ + + +    +  + K  + S    +    Q  
Sbjct: 98  GFKFVNTADTMISS--RLLSLEQSSLSFVVEHY---HKVTLSKVEQKSNWEIRPLQKQQL 152

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH 567
           ++A  ++  +  +WL +   L    L  
Sbjct: 153 KYAALDTAYLESIWLKMEEDLKRRSLYD 180


>gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
 gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
          Length = 288

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 82/237 (34%), Gaps = 36/237 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +   + + +  L      +    +++   +  +   + +ST  Q D     +      
Sbjct: 12  VSDPDALSRLLDALAGERVLALDTESNSFHVYRERVCLLQLSTRAQ-DFVVDPISVDVRP 70

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L                EIL         +    + H   YD   LHR YG  +    D 
Sbjct: 71  LG---------------EIL--------CDGREVVLHGADYDVRCLHREYGWRIPRLFDT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           M+ +  L  GR    ++++ +         + K+ + S    +        +A  +++ +
Sbjct: 108 MIAARRL--GRPGLGLSALVEAHFGVR---LSKAFQRSDWGRRPLTPDQLAYAALDTHFL 162

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV--SAEISK 604
           L L+ LL  +L     L    +  + +  VV++  +     D +  +++  S E+  
Sbjct: 163 LPLFDLLTGELATRGALEEAWKESQRIASVVARERV----FDPEGWRRIKGSRELDA 215


>gi|77736641|ref|NP_001029995.1| XPG-complementing protein [Gallus gallus]
 gi|71725078|dbj|BAE16755.1| XPG [Gallus gallus]
          Length = 1118

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 26/204 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 727 QELLRLFGIPYIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDVWLFGARHVYKNFFS 781

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           +    E         + G+   K++ L  L G   D   GIP +G+ TA  +L E+    
Sbjct: 782 RNKYVEYYQYIDFQNQLGLDRSKLINLAYLLG--SDYTEGIPNVGFVTAMEILNEFPGHG 839

Query: 214 LENILINAS---------RIKQK----KRRENILE-YAETARLSRKLVMLRTDVPITIPL 259
           LE +L  A          +I+      K ++ + E    +   +  +        +    
Sbjct: 840 LEPLLKFAEWWNEAQKNKKIRPNPRDTKVKKKLRELQLSSGFPNPAVAEAYLKPVVDETR 899

Query: 260 EHLILEDCNGPRLISFLKALEFTK 283
              I    +  ++  F K      
Sbjct: 900 GSFIWGKPDVEQIREFCKDHFGWT 923


>gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1]
 gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1]
          Length = 206

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 24/170 (14%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            + +    T  +     +   + +S+ D   D                 Q + G+ +   
Sbjct: 20  DAVAVDTETLGLQPHRDRLCVVQLSSGDGTADV---------------IQIAKGQKSAPN 64

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                L +   +    KI H  ++D  +L   +G+         + S +  +    H + 
Sbjct: 65  -----LVRLLSDRDITKIFHFGRFDLAILAHTFGVMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            I  + L+     I K ++SS    +       E+A  +   + +L  + 
Sbjct: 120 EICGELLNVN---ISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKDIF 166


>gi|254454077|ref|ZP_05067514.1| ribonuclease D [Octadecabacter antarcticus 238]
 gi|198268483|gb|EDY92753.1| ribonuclease D [Octadecabacter antarcticus 238]
          Length = 395

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 69/207 (33%), Gaps = 24/207 (11%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +            I  T ++  +  +       +          ++SK   I ++ + + 
Sbjct: 1   MWAQEYEKAQMKTITTTAELATYCAQAAKYPYVTVDTEFLRERTYYSKLCLIQLAYMGEG 60

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            D +  V+ +   L                  L+ L + F++E+ +K+ H  + D  +  
Sbjct: 61  GDDAVLVDPLAEGLD-----------------LAPLYELFKDENVVKVFHAARQDLEIFF 103

Query: 478 -RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
              GI  +   D  + + V   G  +    ++ +K      K+ +          +   +
Sbjct: 104 VDQGIIPKPLFDTQVAAMVCGFGEQA-GYETLVRK----IAKDNVDKSSRFTDWSRRPLT 158

Query: 537 QVQE-HAIENSNVILQLWLLLRPKLIV 562
             Q+ +A+ +   +  ++  L  +L  
Sbjct: 159 DAQKTYALADVTHLRVIYENLSAELEK 185


>gi|116326798|ref|YP_803335.1| hypothetical protein TNAV2c_gp112 [Trichoplusia ni ascovirus 2c]
 gi|102231806|gb|ABF70629.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
          Length = 410

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 66  DYPAVTFRNEIYPDYKANRPKIPEMLLP-QLPLVRLATQAFGIPAIEIQGFEADDIIATY 124
           D     F   IY      R     +        V  A +  G   +     EA+ +    
Sbjct: 197 DEDNDQFNKTIYKKILNARQLRASVSKQIDFNYVTEALRRNGACVVSSP-TEAETMCGAM 255

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMV 180
                  G A    S D D++        ++      +    I+I+ ++   G+  E+ +
Sbjct: 256 I----SAGLADVAYSRDYDMLAYRGVKHVIFSMSIYRRTYSSINIDKLMHLMGLNSEQFI 311

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
               L G   D    IPG+G K    L+++Y N+E IL
Sbjct: 312 DFCILCG--TDYNKSIPGMGPKVVLKLIKKYNNIERIL 347


>gi|156542538|ref|XP_001599044.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 1138

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 82/226 (36%), Gaps = 32/226 (14%)

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
           +++  Q P+K  +++     +  ++      I   +D++  ++ LE     +  +     
Sbjct: 605 ELDKFQPPEKQLVKKRPTKYKPVLDTPLIV-IEKVQDLKILLEDLEKYNEIAVDLE---- 659

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
                                SF+  T  + +S   +       TL  E L  L + F  
Sbjct: 660 ----------------HHSYRSFQGITCLMQISTKDTDYLIDTLTLRSE-LHVLNEIFTK 702

Query: 460 EHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
              LK+ H    D L L R  G+ +    D    +  L        +  ++  +L  T  
Sbjct: 703 PSILKVFHGADSDILWLQRDLGLYIVNMFDTYQAAKQL-------GLPFLSLSYLLKTHC 755

Query: 519 EILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           EI  ++   +   +I     ++ ++A E+++ +L +  +L   LI 
Sbjct: 756 EISANKHFQLADWRIRPLPEELMKYAREDTHYLLYIKDILSNALID 801


>gi|156086876|ref|XP_001610845.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798098|gb|EDO07277.1| conserved hypothetical protein [Babesia bovis]
          Length = 240

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 137 IISTDKDLMQLVSPTTCLYDTVKEEKIDIEHV--IKKWGIPPEKMVCLQALTGDSIDNIP 194
           ++S D + + L +P        K     I H+  +   G   ++ V    L G   D IP
Sbjct: 112 VLSDDTNAIALGAPNVIRDYCGKNVSTTINHIALLDAMGFSRDQFVDFCVLCG--TDGIP 169

Query: 195 GIPGIGYKTAALLLQEYGNLEN 216
            IP IG + A  ++  + +LE 
Sbjct: 170 LIPHIGPERAYRIVSSFNSLEA 191


>gi|19173066|ref|NP_597617.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
           [Encephalitozoon cuniculi GB-M1]
 gi|74621278|sp|Q8SS91|FEN1_ENCCU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|19168733|emb|CAD26252.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
           [Encephalitozoon cuniculi GB-M1]
          Length = 345

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 43/226 (19%)

Query: 34  PVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLP 93
           P + + GF    ++ ++         +   +FD      + +     K  R         
Sbjct: 59  PTSHLVGFF---YRTIRMVELGITPVY---VFDGVPPEIKMKELEKRKERRAAADREYRE 112

Query: 94  QLPL-----------------------VRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130
              +                        +      GIP       EA+   A        
Sbjct: 113 ASEVGDKELMEMYDKRKTKVTGVHVDECKRLLGLMGIPFETAPS-EAEAYCALLCKKKAV 171

Query: 131 EGFAVTIISTDKDLMQLVSPTT-CLYDTVKEEKI-----DIEHVIKKWGIPPEKMVCLQA 184
            G    + + D D +   SP     ++  + +++     ++  +++   +   + + L  
Sbjct: 172 YG----VATEDMDALTFGSPVVLRNFNGTQSKRLPVMEHNLPQILEDLSLDHSEFIDLCI 227

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS-RIKQKKR 229
           L G   D    + GIG K A  L++++ ++ NIL N    +    R
Sbjct: 228 LLG--CDYCSTLKGIGPKKALGLIKKHRSIGNILKNEDLEVPGDWR 271


>gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 1402

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 90/240 (37%), Gaps = 20/240 (8%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDST 440
           K E      F + T  + + +   I I    +   +  D   K       LS  T   ++
Sbjct: 377 KYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTS 436

Query: 441 GKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFED 488
             + + +       ++     F+ N+     GHN+++D       L R G     +   D
Sbjct: 437 ITDEMVQAADDEAVVIKQFMDFYGND--PLCGHNVQFDVGFVNAALKRCGYPEISQPVVD 494

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +S +L   +S H + S+ +K+   L +  +    +  +   + K+ D+   ++  ++
Sbjct: 495 TLEVSRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMFKLLDAFNDKYQEDD 554

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM-EITGIQIDQDLLKQVSAEISK 604
              +         K      + V  +  KP +  + ++  + GI+ +   L+   +E+ +
Sbjct: 555 LGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKGLRTPKSELRR 614


>gi|315500006|ref|YP_004088809.1| ribonuclease d [Asticcacaulis excentricus CB 48]
 gi|315418018|gb|ADU14658.1| ribonuclease D [Asticcacaulis excentricus CB 48]
          Length = 382

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 58/197 (29%), Gaps = 29/197 (14%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T  +  +  K+ +    +          +  K   I  ++ +           I  
Sbjct: 3   TITTTAALTDFCAKIASAPFITVDTEFMRETTYWPKLCLIQAASEEHAG--------IID 54

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
            LS                 L        +   LK+ H  + D  + +  G       D 
Sbjct: 55  PLSPDLD-------------LKPFLDLLTDPAILKVFHACRQDVEIFNNLGAMPAPVFDT 101

Query: 490 MLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            + +  + +G        +A   L     + +I K  + +    +    Q  ++A+ +  
Sbjct: 102 QVAA--MAAGFG----DQVAYDSLVRQVIKVDIDKGSRFTDWSRRPLSEQQLQYALGDVT 155

Query: 548 VILQLWLLLRPKLIVEK 564
            + +L+  L  KL  + 
Sbjct: 156 HLARLYPKLVEKLKAQN 172


>gi|162456575|ref|YP_001618942.1| hypothetical protein sce8292 [Sorangium cellulosum 'So ce 56']
 gi|161167157|emb|CAN98462.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 72

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287
           +    ++E  E A L R L  LR DVP+   L+ L        R  ++  A+    L  R
Sbjct: 8   RIARALVEQREDALLYRTLATLRIDVPLAEGLDDLRFRGVPRDRFEAWCDAMNVRTLKTR 67


>gi|57641216|ref|YP_183694.1| flap endonuclease-1 [Thermococcus kodakarensis KOD1]
 gi|73919352|sp|Q5JGN0|FEN_PYRKO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|57159540|dbj|BAD85470.1| flap structure-specific endonuclease [Thermococcus kodakarensis
           KOD1]
          Length = 340

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 95/317 (29%), Gaps = 88/317 (27%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKESIASHF 61
           +D  +    A Y      R+ DG P         + ++GF    ++ +         ++ 
Sbjct: 26  IDAFN----AMYQFLSTIRQRDGTPLMDSQGRITSHLSGFF---YRTINLMEAGIKPAY- 77

Query: 62  AVIFDYPAVTFRN--------------------------EIYPDYKANRPKIPEMLLPQL 95
             +FD     F+                           E    Y     ++ E L+   
Sbjct: 78  --VFDGKPPDFKKRELEKRREAREEAEEKWYEALEKGDLEEAKKYAMRATRVNEELINDA 135

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
              +   +  GIP ++                A          S D D +   +P     
Sbjct: 136 ---KKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYAS-----ASQDYDSLLFGAPRLVRN 187

Query: 156 DT---------------VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGI 199
            T               VK E + +E V+K+ GI  EK++ L  L G   D  P GI GI
Sbjct: 188 LTITGRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVG--TDYNPGGIKGI 245

Query: 200 GYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL 259
           G K A  +++   +        S +     +E                    + P+T   
Sbjct: 246 GPKKALTIVKRTKDPLAKYQKESDVDLYAIKE-----------------FFLNPPVTDDY 288

Query: 260 EHLILEDCNGPRLISFL 276
           E L   + +   ++ FL
Sbjct: 289 E-LKWREPDEEGILKFL 304


>gi|270007326|gb|EFA03774.1| hypothetical protein TcasGA2_TC013885 [Tribolium castaneum]
          Length = 890

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 91/258 (35%), Gaps = 35/258 (13%)

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
           + TP +L  E+   +    +++    +I   + + + V+ L      S  +   +  +F 
Sbjct: 234 QPTPSQLIDEK--SVPPKSLSDTPLIEIDKAEQLDELVETLRHCKEFSVDVEHHSYRSFM 291

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                I IST D                     +D        ++ LS L + F     +
Sbjct: 292 GITCLIQISTED---------------------KDYLIDALALRDKLSILNEVFTKNTIV 330

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           KI H    D   L R   + +    D    +  L          +++  +L      +  
Sbjct: 331 KIFHGADKDIEWLQRDLSLYVVNMFDTHQAAKALQ-------YPALSLAFLMKKFCNVTP 383

Query: 523 SRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMID 578
           +++  +   +I     +++ +A E+++ ++ ++ +++ +L     K   +   + +   +
Sbjct: 384 NKQFQLADWRIRPLPDELKSYAREDTHYLIYIYKMMKRELLHKTNKCDKLLRSVIERSTE 443

Query: 579 VVSQMEITGIQIDQDLLK 596
           V  +     I  +   L+
Sbjct: 444 VCKKRYFKPILHEDSHLE 461


>gi|77362412|ref|YP_341986.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877323|emb|CAI89540.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 376

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 63/203 (31%), Gaps = 27/203 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +  +V++++     +           + +   I +   +           
Sbjct: 2   HYQLIETQNQLNTFVEQIKNKPVLAIDTEFMRRRTLYPEVALIQVYDGE----------- 50

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG 485
                  H +           +    LK    +   LK+ H+   D  V  +Y G     
Sbjct: 51  -------HLALIDPLAELSLFDFWQILK----DPAVLKVFHSPSEDIEVFQKYAGFVPTP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D      +L  G +    A + +  L     EI KS   +  + +   ++  E+A  +
Sbjct: 100 LFDTQFALQILGEG-NCMGFALMVKTLLDI---EIDKSESRTNWLQRPLTNKQLEYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEKLLHV 568
           +  +L  + L+   +    L ++
Sbjct: 156 AYHLLPCFNLIIDSVKAADLFNI 178


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 104/332 (31%), Gaps = 42/332 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 420 EALSEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 477

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T  ++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 478 LTGITDGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVI 537

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-S 546
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 538 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 587

Query: 547 NVILQLWLLLR-PKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 588 KEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 645

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL------ 657
           + +  +  +      E   + S    G+I    ++          ++    + +      
Sbjct: 646 ERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYA 705

Query: 658 ----EQINCGDNPIIKNILEWRQLSKIKSTYA 685
               +++   ++ + + I    ++ K      
Sbjct: 706 PLIEQELVKNEHDLEEIIQNLVEIGKSLDKIV 737


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 1435

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 77/194 (39%), Gaps = 26/194 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF----IDLSVHTSQDS 439
           L+      F + T  + + + K   I ++ +  K+         F      LS  T++ +
Sbjct: 415 LKEATYVVFDVETTGLSSVYDKI--IELAAVKMKEGQVIDTFEAFINPNQPLSSFTTELT 472

Query: 440 TGKNTLTKEILSY---LKKFFE-NEHFLKIGHNIKYDKLVLH----RYGIS--MRGFEDI 489
              N + ++       LK F++ +++ + + HN  +D   L+    R GI        D 
Sbjct: 473 GITNAMVEDAPQEDVVLKDFYDFSQNTILVAHNASFDIGFLNKGYERIGIENTPLPVIDT 532

Query: 490 MLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           + +S +++    SH + ++A+++   L    + +  S  +   + K+ D  + +  +E  
Sbjct: 533 LELSRMVNPHLKSHRLNTLAKRYGVNLEQHHRAVYDSETTGYLMYKLLDQALADFGME-- 590

Query: 547 NVILQLWLLLRPKL 560
                    L  +L
Sbjct: 591 -----YHHQLNNQL 599


>gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 294

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 73/213 (34%), Gaps = 30/213 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +   + + +  L      +    +++   +  +   + +ST  Q D     +      
Sbjct: 16  VSDPDALTRLLDALAGERVLALDTESNSFHVYRERVCLLQLSTRTQ-DFVVDPISVDVRP 74

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L                EIL         +    + H   YD   LHR YG  +    D 
Sbjct: 75  LG---------------EIL--------CDGREVVLHGADYDVRCLHREYGWRIPRLFDT 111

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           M+ +  L  GR    ++++ +         + K+ + S    +        +A  +++ +
Sbjct: 112 MIAARRL--GRPGLGLSALVESHFGVR---LSKAFQRSDWGRRPLTPDQLAYAALDTHFL 166

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           L L+ LL  +L     L    +  + +  VV++
Sbjct: 167 LPLFDLLTGELAARGALDEAWKESQRIASVVAR 199


>gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1445

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 90/240 (37%), Gaps = 20/240 (8%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDST 440
           K E      F + T  + + +   I I    +   +  D   K       LS  T   ++
Sbjct: 420 KYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTS 479

Query: 441 GKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFED 488
             + + +       ++     F+ N+     GHN+++D       L R G     +   D
Sbjct: 480 ITDEMVQAADDEAVVIKQFMDFYGND--PLCGHNVQFDVGFVNAALKRCGYPEISQPVVD 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +S +L   +S H + S+ +K+   L +  +    +  +   + K+ D+   ++  ++
Sbjct: 538 TLEVSRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMFKLLDAFNDKYQEDD 597

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM-EITGIQIDQDLLKQVSAEISK 604
              +         K      + V  +  KP +  + ++  + GI+ +   L+   +E+ +
Sbjct: 598 LGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKGLRTPKSELRR 657


>gi|296284765|ref|ZP_06862763.1| ribonuclease D [Citromicrobium bathyomarinum JL354]
          Length = 391

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 26/209 (12%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           +  I  T  +     +L               + +  +   + I   D+ +  +      
Sbjct: 4   HDLITTTDALADLCDRLGKGDFVCVDTEFMRENTYWPELCLVQI--GDEHEAAAIDPLAD 61

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGF 486
            IDL               K +L  L    ENE  LKI H    D  + +   G +    
Sbjct: 62  GIDL---------------KPLLDLLT---ENEDVLKIFHAGSQDVEIFYNLTGKTPHPI 103

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  +    + S       A++ + WL    K I K  + +    +    +  E+AI + 
Sbjct: 104 FDTQIAMMAI-SQSEQIGYANLVEHWLD---KTIDKGARFTDWSRRPLTDRQLEYAIGDV 159

Query: 547 NVILQLWL-LLRPKLIVEKLLHVYERLDK 574
             + +++  +L+  +  ++ + +   ++K
Sbjct: 160 TYLAKIFPRILKKLMKTDRGMWLNAEMEK 188


>gi|171910647|ref|ZP_02926117.1| ribonuclease D, putative [Verrucomicrobium spinosum DSM 4136]
          Length = 381

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 81/229 (35%), Gaps = 39/229 (17%)

Query: 366 DSYTKIVNTKDIQQWVQKLE------TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
             Y  I   + ++     L        +         D++  F  K   I ++       
Sbjct: 12  RDYYWIDTEEQLRGLAADLNSLITRGELTRVYLDTEADSLHHFQEKLCLIQLA------- 64

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLHR 478
            +  +  +   L                 +LS L    E  ++     H+  YD  +L R
Sbjct: 65  -ANGIYALIDPL-----------------VLSDLGPLLEVVDNAEVWFHSADYDLTLLKR 106

Query: 479 -YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
               +    +D  + + +  +G  +  +A++ ++    T   + KS +      +   ++
Sbjct: 107 TCNWTPTHLKDTQVAARL--TGHRTFGLAALVEQHCGVT---LCKSSQKEDWSLRPLPAK 161

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER-LDKPMIDVVSQMEI 585
           +Q +A+++   + +L  +    L+ +  +  +E+  +    DV+S+ E 
Sbjct: 162 MQAYAVDDVRYLGRLVDIFMTDLVAKDRVTWFEQSCESLRRDVLSRQEK 210


>gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
 gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
          Length = 296

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 86/248 (34%), Gaps = 36/248 (14%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            + ++  + + V+++      +    +++   +  +   + +ST           + I  
Sbjct: 12  LVADSSSLSRLVEEVRAEPVVALDTESNSFHVYRERICLLQVSTR--------AADYIVD 63

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
            L+V  S          + +L                H   YD   L R YG  +    D
Sbjct: 64  PLAVDPSPLGEVLCDGRETVL----------------HGADYDVRCLRREYGWHLPRLFD 107

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            M  +  L  GR    ++++ +         + K+ + S    +   +    +A  +++ 
Sbjct: 108 TMAAARRL--GRQGLGLSALVEAHFGVR---LSKTFQRSDWGQRPLTAAQLAYAALDTHY 162

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS--AEISKNL 606
           +L L  +L  +L          R  + +  VV++  +     D +  +++    E+    
Sbjct: 163 LLALRDMLAGELDTLGASEQARREFERIAAVVARERV----FDPEGFRRLRGARELDPAG 218

Query: 607 LSLEENIY 614
           L++   IY
Sbjct: 219 LAVLRAIY 226


>gi|73667317|ref|YP_303333.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394458|gb|AAZ68735.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 386

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 92/230 (40%), Gaps = 18/230 (7%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LS L     N++ +K+ H+ + D   L  ++        D  + +       ++   + +
Sbjct: 64  LSPLNSILYNKNIVKVFHDCRQDIDALLTKFPKIPNPIFDTQVAAMFCYCYENAVGYSRL 123

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLH 567
            +++L  +  ++  S K S  + +       ++A+ +   + +L+ +L   L+   KLL 
Sbjct: 124 VEQFLGISLDKL--SLKRSNWMLRPLSPDKIQYALNDVIYLHELYQILYDNLVDSGKLLW 181

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN---LLSLEENIYDLSGEKFNLS 624
             E +D  ++  ++   +  I         +S++I++    ++       +   + FNL+
Sbjct: 182 FLEEMDNIVLQELNYSNVCDIP-------DLSSDITREEIIVVKSVIEWREKLAQFFNLN 234

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674
             ++L  IL  K+              +T     +     + I+ ++LE 
Sbjct: 235 --REL--ILRNKVMLSLIKDFIRKSDISTLSKYIKKEYLTHGIVADLLEI 280


>gi|241668633|ref|ZP_04756211.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 364

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 27/203 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I   K +   ++ L++    +       M  ++ +   + I+T +              
Sbjct: 2   IINTNKQLNNVIEILKSTSQIAVDTEFYWMRTYYPELCLVQIATEN-------------- 47

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
                   +    +TL     S LK  FE+ +  KI H+   D  ++ R +   +    D
Sbjct: 48  --------EIFLIDTLEDLDFSKLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   +S   + ++ +  L     E+ K  + S    +    +  ++A+++   
Sbjct: 100 TQLAASFL-GTQSQISLKALLKDILDI---EMEKESQFSDWRKRPLSQKQFDYALKDVEH 155

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           ++++   L  KL        +  
Sbjct: 156 LIEIKYHLESKLNQTDYKQYFYE 178


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1435

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 37/226 (16%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +   +  +   K E                 H
Sbjct: 415 LQDATYVVFDVETTGLSNQYDKIIELA-AVKVKNGEIIDKFERFSNPHEKLTETIKNLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K +  +   + + HN  +D         R G         D
Sbjct: 474 ITDDMLKDAPEIEEVLTEFKAWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNAVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AI 543
            + +S  +++    H +  +A+K+            + +     I D++   +       
Sbjct: 532 TLELSRTINTSYGKHGLNFLAKKY----------GVELTQHHRAIYDTEATAYIFVKMLA 581

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +   + +     +  KL  E          +P    +     TG++
Sbjct: 582 QLKALDVHNHQDINKKLSNEDAYKRA----RPQHVTLIVQNQTGLK 623


>gi|238695628|ref|YP_002922655.1| P41 [Xanthomonas phage phiL7]
 gi|190343995|gb|ACE75781.1| P41 [Xanthomonas phage phiL7]
          Length = 309

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 75/206 (36%), Gaps = 16/206 (7%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA 69
           VDG      A+YA         GL   A     + + K+ + +   S+  H         
Sbjct: 33  VDGDYI---AYYAAGNAETSP-GL---ARQSVLHRVDKVKRLTGASSVTMHLTADHSTKG 85

Query: 70  VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF---EADDIIATYTY 126
             F       Y+  R             +R   +A        + +   EADD IA  T+
Sbjct: 86  DRFLAAKTKKYQGQRGGTKP---VNWRFLRDYMEAHDGSKFTPKLWTNREADDGIAYLTH 142

Query: 127 -IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-IDIEHVIKKWGIP-PEKMVCLQ 183
            +AE+ G    I + DKD+              K    +    V+ + G+    +   +Q
Sbjct: 143 TLAEQRGQLHVIHTADKDMRMFAGVHLNWKTWHKTVVPLGAYDVLGQDGLQYGHRWFWMQ 202

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQ 209
            L GD+ DNIPG+P +G   A  +L+
Sbjct: 203 MLKGDTADNIPGLPRVGDVAADNILR 228


>gi|49237393|ref|YP_031674.1| putative DNA repair protein RAD2 [Frog virus 3]
 gi|47060211|gb|AAT09755.1| putative DNA repair protein RAD2 [Frog virus 3]
          Length = 363

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
             L+R +  AFG P  +    +  ++              +TI S       L       
Sbjct: 162 YELMRRSLDAFGFPYADAP--DEAELCCVRVVQMGIADAPMTIDSDALACGALHGVDVVY 219

Query: 155 YDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            D   E    +      +  G+  E+ + L  + G   D    +  +G  TA  L++ +G
Sbjct: 220 TDLHGETLTAMSTSKSKEALGLNGEQFMDLCVMCG--TDFNQRVHKLGPVTALKLIKAHG 277

Query: 213 NLENILINASRIK--QKKRRENILEYAET 239
           ++ENI   A  +   +  R   IL   + 
Sbjct: 278 SIENIPSAAPSMSCLEAVRTREILSGGDM 306


>gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2]
 gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2]
          Length = 377

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 63/209 (30%), Gaps = 27/209 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I   + +        +    +          +H +   + ++T +        V  +   
Sbjct: 3   ISTHEQLAALCDAARSFSIVAIDTEFLRERTYHPRLCLVQVATPE--------VSALVDP 54

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L +              E LS L     +E   KI H    D  VL     +      D 
Sbjct: 55  LEI--------------EDLSPLAALMADEGTRKIFHACSQDMEVLLNALDVLPNPIFDT 100

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + +  L   R       + + +   +   + K+   +    +   ++  ++A ++   +
Sbjct: 101 QVAAAFLGE-RVQMSYDGLVKAFCGVS---LPKTASLTDWSHRPLTAEQMDYAEDDVRYL 156

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMID 578
           +  + ++  +L     +       +P+ D
Sbjct: 157 ICAYEVMAERLEQRGRMSWALDEMRPLAD 185


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus pseudintermedius ED99]
          Length = 1435

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 37/226 (16%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +   +  +   K E                 H
Sbjct: 415 LQDATYVVFDVETTGLSNQYDKIIELA-AVKVKNGEIIDKFERFSNPHEKLTETIKNLTH 473

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFED 488
            + D        +E+L+  K +  +   + + HN  +D         R G         D
Sbjct: 474 ITDDMLKDAPEIEEVLTEFKAWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSANAVID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AI 543
            + +S  +++    H +  +A+K+            + +     I D++   +       
Sbjct: 532 TLELSRTINTSYGKHGLNFLAKKY----------GVELTQHHRAIYDTEATAYIFVKMLA 581

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +   + +     +  KL  E          +P    +     TG++
Sbjct: 582 QLKALDVHNHQDINKKLSNEDAYKRA----RPQHVTLIVQNQTGLK 623


>gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1445

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 90/240 (37%), Gaps = 20/240 (8%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDST 440
           K E      F + T  + + +   I I    +   +  D   K       LS  T   ++
Sbjct: 420 KYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTS 479

Query: 441 GKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFED 488
             + + +       ++     F+ N+     GHN+++D       L R G     +   D
Sbjct: 480 ITDEMVQAADDEAVVIKQFMDFYGND--PLCGHNVQFDVGFVDAALKRCGYPEISQPVVD 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +S +L   +S H + S+ +K+   L +  +    +  +   + K+ D+   ++  ++
Sbjct: 538 TLEVSRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMFKLLDAFNDKYHEDD 597

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM-EITGIQIDQDLLKQVSAEISK 604
              +         K      + V  +  KP +  + ++  + GI+ +   L+   +E+ +
Sbjct: 598 LGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKGLRTPKSELRR 657


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
          Length = 1452

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/332 (12%), Positives = 104/332 (31%), Gaps = 42/332 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 420 EALSEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 477

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T  ++         L+ F E ++  + + HN  +D   L     R+GI        
Sbjct: 478 LTGITDGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARHGIPEAANPVI 537

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-S 546
           D + ++  L        +  +++K+                    I D++   H      
Sbjct: 538 DTLELARYLYPQFKRFGLGVLSKKF----------GVSLEQHHRAIYDAEATGHLAWIFV 587

Query: 547 NVILQLWLLLR-PKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
              +    +L   +L         Y+R     + ++++    G++ D   L  +S  E  
Sbjct: 588 KEAMDNHNMLYHDQLNEHIGEGDSYKRARPFHVTILAK-NQAGLK-DLFKLISMSNVEYF 645

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL------ 657
           + +  +  +      E   + S    G+I    ++          ++    + +      
Sbjct: 646 ERVPRIPRSQLKKMRENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYA 705

Query: 658 ----EQINCGDNPIIKNILEWRQLSKIKSTYA 685
               +++   ++ + + I    ++ K      
Sbjct: 706 PLIEQELVKNEHDLEEIIQNLVEIGKSLDKIV 737


>gi|124485183|ref|YP_001029799.1| flap endonuclease-1 [Methanocorpusculum labreanum Z]
 gi|166973701|sp|A2SQC6|FEN_METLZ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|124362724|gb|ABN06532.1| flap endonuclease 1 [Methanocorpusculum labreanum Z]
          Length = 333

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 79/222 (35%), Gaps = 41/222 (18%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +    A GI  I+    E  +  +++     K G     +S D D +   +P      TV
Sbjct: 137 KELLSALGIAWIQAP--EEGEAQSSFMT---KNGDVTYAVSQDYDSLLFGAPDLVRNITV 191

Query: 159 KE-------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
                          E++ +E V+    +  E+++ +  L G   D   G+PG+G KTA 
Sbjct: 192 SGKKRIRGKVLSVYPERLRLEEVLTGLSVTQEELIQIALLIG--TDYNSGVPGVGPKTAV 249

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
            +                +++ K  + I E  E A    +L+    D P+     ++   
Sbjct: 250 KI----------------VREGKFYDRIGES-ENAAEPDQLIGYFMDPPVERSY-NIESR 291

Query: 266 DCNGPRLISFL-KALEFTKLINRVATTYDCDAANIEPVVLDI 306
             +  R+I  L     FT+   RV    +   A      LD 
Sbjct: 292 SPDPDRVIDLLCGEHGFTQ--ERVEAGLERLGAKKGQATLDA 331


>gi|50745055|ref|XP_419963.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 941

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 16/140 (11%)

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
              +  G+P ++  G EA+ + A        +G     I+ D D+  L    T   +   
Sbjct: 119 QLLECLGVPWVQAAG-EAEAMCAYLNAKGHVDG----CITNDGDVF-LYGAQTVYRNFAM 172

Query: 160 EEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQEYG 212
             K        +  + +K G   E ++ L  L G   D +P GIPG+G + A  L++   
Sbjct: 173 NSKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLG--CDYLPKGIPGVGKEQALKLIETLR 230

Query: 213 NLENILINASRIKQKKRREN 232
             +N+L    + K++   +N
Sbjct: 231 G-QNLLQRFEQWKEQSEHDN 249


>gi|66821461|ref|XP_644205.1| hypothetical protein DDB_G0274419 [Dictyostelium discoideum AX4]
 gi|60472149|gb|EAL70102.1| hypothetical protein DDB_G0274419 [Dictyostelium discoideum AX4]
          Length = 627

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 62/142 (43%), Gaps = 16/142 (11%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR--YGISMRGFEDIMLMSYVLDSGR---S 501
           KE L ++K+  E++  LKI +N K     L +    + ++   D M+ +++ +S     +
Sbjct: 495 KEKLKFMKEIIEDDSILKIIYNCKDSIKSLIKSFQWLELKNCWDPMIGAWLYESNCKLLN 554

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            + + SI            +K +K+     +   + +  +   +   +L+++ +L   + 
Sbjct: 555 MYQLDSILN---------FIKLKKTRSNEQQQKLTSLDRYP-NDCLTLLEVYTILTRLID 604

Query: 562 VEKLLHVYERLDKPMIDVVSQM 583
            E L   +   +  ++ ++S M
Sbjct: 605 DENLNIPFSN-EMKVLVILSSM 625


>gi|328776419|ref|XP_003249163.1| PREDICTED: exosome component 10-like [Apis mellifera]
          Length = 1271

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 72/219 (32%), Gaps = 31/219 (14%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P    L++ +      + +     I +  DI+  +  L+     +  +   +  +F    
Sbjct: 238 PPNDQLKKSEPTKYKNLEDTLLVMIKDPSDIKLLINDLKQYKEIAVDLEHHSYRSFQGIT 297

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             + IST D                     +D        +  L  L + F     LK+ 
Sbjct: 298 CLMQISTED---------------------KDYLIDTLSLRSELHELNEIFTKPTILKVF 336

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D   L R   + +    D    +  L+       +  ++  +L      +   + 
Sbjct: 337 HGADLDIQWLQRDLSLYVVNMFDTHQAAKQLN-------LPYLSLAYLLKHYCNVDPDKH 389

Query: 526 SSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +   +I     ++ ++A E+++ +L +  +L+  LI 
Sbjct: 390 FQMADWRIRPLPEKLIKYAREDTHYLLYIKDMLKNALID 428


>gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1411

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 90/240 (37%), Gaps = 20/240 (8%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDST 440
           K E      F + T  + + +   I I    +   +  D   K       LS  T   ++
Sbjct: 386 KYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTS 445

Query: 441 GKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFED 488
             + + +       ++     F+ N+     GHN+++D       L R G     +   D
Sbjct: 446 ITDEMVQAADDEAVVIKQFMDFYGND--PLCGHNVQFDVGFVDAALKRCGYPEISQPVVD 503

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +S +L   +S H + S+ +K+   L +  +    +  +   + K+ D+   ++  ++
Sbjct: 504 TLEVSRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMFKLLDAFNDKYHEDD 563

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM-EITGIQIDQDLLKQVSAEISK 604
              +         K      + V  +  KP +  + ++  + GI+ +   L+   +E+ +
Sbjct: 564 LGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKGLRTPKSELRR 623


>gi|268532256|ref|XP_002631256.1| C. briggsae CBR-CRN-3 protein [Caenorhabditis briggsae]
 gi|187036904|emb|CAP23569.1| CBR-CRN-3 protein [Caenorhabditis briggsae AF16]
          Length = 868

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 82/217 (37%), Gaps = 34/217 (15%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T +   + ++    KL ++   S  +    M  +      I IST D             
Sbjct: 272 TIVDTKEKLESLRDKLNSVEEFSVDLEHHEMRTYLGLTCLIQISTRD------------- 318

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
                   +D         + +  L + F N + LK+ H    D L L R +G+ +    
Sbjct: 319 --------EDFIIDPFPMWDRIGILNEPFTNPNILKVFHGSDNDVLWLQRDFGVHVVNLF 370

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI--DKISDSQVQEHAIEN 545
           D  +        +  +   S+A  +L++   +++  ++  +     +   + +  +A E+
Sbjct: 371 DTYVAM-----KKLKYPKFSLA--YLAFRFADVVLDKQYQLADWRARPLRNAMINYARED 423

Query: 546 SNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDV 579
           ++ +L  + +LR +L+ +    L +VY   +   I V
Sbjct: 424 THYLLYSYDMLREQLLQQGHKDLENVYAESNDLCIRV 460


>gi|73989268|ref|XP_542659.2| PREDICTED: similar to XPG-complementing protein isoform 1 [Canis
            familiaris]
          Length = 1194

 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 94/306 (30%), Gaps = 32/306 (10%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 774  QELLRLFGIPYIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 828

Query: 159  KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
            K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 829  KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 886

Query: 214  LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED--CNGPR 271
            LE +L                E+   A+ ++K+     D  +   L  L L     N   
Sbjct: 887  LEPLL-------------KFSEWWHEAQKNKKIRPNPYDTKVKKKLRKLQLTPGFPNPAV 933

Query: 272  LISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQF 331
              ++LK +      + +    D D        L       +           T    S F
Sbjct: 934  ADAYLKPVVDDSRGSFLWGKPDLDKIREYEEALTACIFCQRYFG-----WNRTKTDESLF 988

Query: 332  SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391
              L    ++    +      L + ++     I +    + V     ++       I + S
Sbjct: 989  PVLKQLNAQQTQLRIDSFFRLAQQERQDAKGIRSQRLNRAVTCMLRKEREAAASEIEAVS 1048

Query: 392  FKIITD 397
              +  D
Sbjct: 1049 VAMEND 1054


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
          Length = 1438

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L+      F + T  +   + + I +A   +   +  D   +       LS       H 
Sbjct: 417 LKDATYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPHEKLSETIINLTHI 476

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFEDI 489
           + D        +E+L+  K++  +   + + HN  +D         R G      G  D 
Sbjct: 477 TDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDT 534

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + +S  +++    H +  +A+K+
Sbjct: 535 LELSRTINTEYGKHGLNFLAKKY 557


>gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 1411

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 90/240 (37%), Gaps = 20/240 (8%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDST 440
           K E      F + T  + + +   I I    +   +  D   K       LS  T   ++
Sbjct: 386 KYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTS 445

Query: 441 GKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFED 488
             + + +       ++     F+ N+     GHN+++D       L R G     +   D
Sbjct: 446 ITDEMVQAADDEAVVIKQFMDFYGND--PLCGHNVQFDVGFVDAALKRCGYPEISQPVVD 503

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +S +L   +S H + S+ +K+   L +  +    +  +   + K+ D+   ++  ++
Sbjct: 504 TLEVSRLLHPEQSRHTLDSLCRKYNVPLEHHHRANQDAEATGYLMFKLLDAFNDKYQEDD 563

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM-EITGIQIDQDLLKQVSAEISK 604
              +         K      + V  +  KP +  + ++  + GI+ +   L+   +E+ +
Sbjct: 564 LGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKGLRTPKSELRR 623


>gi|320168640|gb|EFW45539.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 385

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 92/279 (32%), Gaps = 28/279 (10%)

Query: 314 IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373
            A    +    T + S  SS+++   +       +          S   I +    +I  
Sbjct: 123 WASAPAVAPTLTTEGSAASSMTNLKDETTGSPQLEVGLPRFQFSGSVVYITDVEVGQIQC 182

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
              + Q V +L T G        D  D   +  +   I              T  + L+V
Sbjct: 183 ADLMSQLVSRLSTEGQ-------DGADGQVAPALGFDIEWFAPFIRGQKARPTALLQLAV 235

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI-ML 491
                        + I   L++   +    K+G  IK D   L R Y + + G  D+  L
Sbjct: 236 ENGPCYLFHLIQMQGIPPALQELLADSRIAKVGVGIKNDVTRLVRDYSLKVNGAVDLEEL 295

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            +  +   R+   + ++ QK L+    +  + R  +     +S   +QE+A  +++  LQ
Sbjct: 296 AAVRVVPLRTRWSLQALVQKTLNCLLDKSSELRLGNWEEAPLSWE-MQEYAANDAHASLQ 354

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
            +L L                    + V++     GI +
Sbjct: 355 TYLAL------------------VAMPVLNYSFSNGIPM 375


>gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 1445

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 90/240 (37%), Gaps = 20/240 (8%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDST 440
           K E      F + T  + + +   I I    +   +  D   K       LS  T   ++
Sbjct: 420 KYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTS 479

Query: 441 GKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFED 488
             + + +       ++     F+ N+     GHN+++D       L R G     +   D
Sbjct: 480 ITDEMVQAADDEAVVIKQFMDFYGND--PLCGHNVQFDVGFVDAALKRCGYPEISQPVVD 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +S +L   +S H + S+ +K+   L +  +    +  +   + K+ D+   ++  ++
Sbjct: 538 TLEVSRLLHPEQSRHTLDSLCRKYNVPLEHHHRANQDAEATGYLMFKLLDAFNDKYQEDD 597

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM-EITGIQIDQDLLKQVSAEISK 604
              +         K      + V  +  KP +  + ++  + GI+ +   L+   +E+ +
Sbjct: 598 LGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKGLRTPKSELRR 657


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
          Length = 1438

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 20/145 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV---------- 433
           L+      F + T  +   + +   I ++ +  KD         F + +           
Sbjct: 417 LKDATYVVFDVETTGLSNQYDQI--IELAAVKVKDGEIIDKFERFSNPNEKLSETIINLT 474

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFE 487
           H + D        +E+L+  K++  +   + + HN  +D         R G      G  
Sbjct: 475 HITDDMLVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVI 532

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + +S  +++    H +  +A+K+
Sbjct: 533 DTLELSRTINTEYGKHGLNFLAKKY 557


>gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM
           6578]
          Length = 198

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 12/132 (9%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLT 446
             +F + T  +D      + IA       +  +F   +      +    ++     +   
Sbjct: 21  VVAFDLETTGLDPVRHSVVEIACVKFQGGEPRAFFSLLVKPPHPIPAEVTKIHGIGDQDV 80

Query: 447 KEI--LSYLKKFFEN--EHFLKIGHNIKYDKLVL----HRYGISMRGFE--DIMLMSYVL 496
           +E   L  +    E+     L + HN  +D   L     R G    GF   D  L++  +
Sbjct: 81  EEAPPLPSVLPMLESFVGTHLLVAHNAPFDLSFLRIEYARCGRPYPGFRAIDTRLLARSV 140

Query: 497 DSGRSSHDIASI 508
                 + +AS+
Sbjct: 141 LPHLGRYSLASL 152


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
          Length = 1449

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 76/198 (38%), Gaps = 26/198 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------H 434
           KL+      F + T  + A   + I I A+   +  +  SF+        +S        
Sbjct: 423 KLKDATYVVFDVETTGLSAERDRLIEIAAVKVKNGAEIDSFESYINPQRPISELITRLTS 482

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISMRGFE--D 488
            + D      L KE+++    + + +  L + HN K+D   L     R G+  +     D
Sbjct: 483 ITNDDVKDAPLEKEVMTNFYNWLDKDDIL-VAHNAKFDLGFLDTCFERLGLENKNNASID 541

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +S   +     H ++++A+ +   L    + I  ++ ++    K+ D Q+ E  IE 
Sbjct: 542 TLFVSRAENKEAKRHGLSNLAKLYKVRLVQHHRAIYDTKATAEIFVKMLD-QLYELGIE- 599

Query: 546 SNVILQLWLLLRPKLIVE 563
                     +  K+ +E
Sbjct: 600 ------YHNEIDEKIDLE 611


>gi|320157018|ref|YP_004189397.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
 gi|319932330|gb|ADV87194.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
          Length = 390

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 33/211 (15%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  I   +D+ +   K                                       + 
Sbjct: 19  RVNYQIITENQDLVRVCSKAREADVVMLDTEF-------------------------VRT 53

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
            T +  L +    D    + +   +L   S   +   +   +K+ H    D  V H  +G
Sbjct: 54  RTYYPQLGLIQLFDGDTLSLIDPTVLTDMSAFTELLNDASVMKVLHACGEDLEVFHNAFG 113

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  D  +M+  L     S   A++ +++L+    E+ KS   +  + +    +  E
Sbjct: 114 AIPVPMVDTQIMAAFL-GHGLSTGFAALVEQYLNV---ELDKSESRTDWLARPLSDKQLE 169

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +A  + + +L L+ +L  K++        ++
Sbjct: 170 YAAADVHYLLPLYEILLEKVMEAGWWQAAQQ 200


>gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 1402

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 90/240 (37%), Gaps = 20/240 (8%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDST 440
           K E      F + T  + + +   I I    +   +  D   K       LS  T   ++
Sbjct: 377 KYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTS 436

Query: 441 GKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGIS--MRGFED 488
             + + +       ++     F+ N+     GHN+++D       L R G     +   D
Sbjct: 437 ITDEMVQAADDEAVVIKEFMDFYGND--PLCGHNVQFDVGFVDAALKRCGYPEISQPVVD 494

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +S +L   +S H + S+ +K+   L +  +    +  +   + K+ D+   ++  ++
Sbjct: 495 TLEVSRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMFKLLDAFNDKYQEDD 554

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM-EITGIQIDQDLLKQVSAEISK 604
              +         K      + V  +  KP +  + ++  + GI+ +   L+   +E+ +
Sbjct: 555 LGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKGLRTPKSELRR 614


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1437

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---------VH 434
           L+      F + T  +   + K I +A +      +   K E                 H
Sbjct: 417 LKDATYVVFDVETTGLSNQYDKIIELA-AVKVHDGEIIDKFERFSNPHERLSDTIKNLTH 475

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL------HRYGISMRGFED 488
            S D         ++L+  K++  +   + + HN  +D   +         G    G  D
Sbjct: 476 ISDDMLVDAPEIDDVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERAGLGNYTNGVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  +++    H +  +A+K+
Sbjct: 534 TLELSRTINTEFGKHGLNFLAKKY 557


>gi|260598272|ref|YP_003210843.1| ribonuclease D [Cronobacter turicensis z3032]
 gi|260217449|emb|CBA31565.1| Ribonuclease D [Cronobacter turicensis z3032]
          Length = 409

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 69/232 (29%), Gaps = 35/232 (15%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           ++ +Y  I     +    +   T  + +          ++ +   I +            
Sbjct: 35  SDLNYQMITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQL------------ 82

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
                     +  ++    + LT    +  +   ++++  K  H    D  V    +G+ 
Sbjct: 83  ----------YDGENVALIDPLTITEWAPFQALLQDQNITKFLHAGSEDLEVFQNAFGMM 132

Query: 483 MRGFEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
              F D   L S+V      S   A++ +         + KS   +  + +    +  ++
Sbjct: 133 PDPFIDTQVLASFVGHP--LSCGFATLVEHHTGVA---LDKSESRTDWLARPLTERQCDY 187

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           A  +   +L +   L  ++     L           +     +  G  +D D
Sbjct: 188 AAADVWYLLPIAHKLMEQVREAGWLTAAIN------ECRLMTQRRGEVLDPD 233


>gi|254456084|ref|ZP_05069513.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083086|gb|EDZ60512.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211]
          Length = 203

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 5/121 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L K  ++E   KI H  + D   + +          D  + S +  S   +H + ++ ++
Sbjct: 65  LIKILKDETITKIFHYGRADMAHIKYYLKTETNNILDTKIASKLARSYSDNHSLKTLIKE 124

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           + +    +I K  +SS     ++ +Q+ ++   +   + Q+   L   L  E  + +Y+ 
Sbjct: 125 FANV---DISKQFQSSDFGGTLTPAQL-KYCANDVIYLHQIHDELFKILERENRIKLYKD 180

Query: 572 L 572
            
Sbjct: 181 C 181


>gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
 gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
          Length = 535

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 105/317 (33%), Gaps = 53/317 (16%)

Query: 269 GPRLISF---LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDT- 324
             ++ +     K L    +             +  P +  +    N  + +  E   D  
Sbjct: 118 RDKVRAMAENFKFLHAKNIQRPQLQFKTKIDNSSSPFIPKLKCKPNALVPLPKEYMEDEQ 177

Query: 325 TIKTSQFSS------LSDQTSKINSEQTPQKLFLE------------RLQKLSQYPINND 366
           T +T +FSS         +   ++ +++      E              + +   P++  
Sbjct: 178 TARTDKFSSKVIKLDPEAEDDNVDGQESRHPYRYEIKHLQPMDWQLKSKKPMMYLPLDET 237

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
               I    +++  ++ L+++   +  +   +  ++      + IST D           
Sbjct: 238 PLNVITEKDELKDLLETLKSVTEFAVDLEHHSYRSYQGFVCLMQISTRDA---------- 287

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
                      D        +  L  L + F +   +KI H    D + L R + I +  
Sbjct: 288 -----------DYIVDTLALRSELWTLNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVN 336

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAI 543
             D    + +L        ++ +  K+ +     +  ++   +   +I     ++ ++A 
Sbjct: 337 MFDTGQAARLLQ--FPRFSLSYLLLKYCN-----VTANKGLQLADWRIRPLPQEMVQYAR 389

Query: 544 ENSNVILQLWLLLRPKL 560
           E+++ +L ++ +L  +L
Sbjct: 390 EDTHYLLYIFDVLTNEL 406


>gi|167933050|ref|ZP_02520137.1| hypothetical protein cdivTM7_00389 [candidate division TM7
           single-cell isolate TM7b]
          Length = 163

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 27/155 (17%)

Query: 461 HFLKIGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
               I +++K     L+   I+  +    DI   S+++D       ++SI    +  +  
Sbjct: 30  TTKMICYDVKDTLHKLNALNINIVVDKVFDIKQASFLIDPLIRDRSLSSIVVGEIDESNP 89

Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMI 577
            ++ +                         I   +     K   +K L  +    D P+ 
Sbjct: 90  AVVIT------------------------AIWNAYDTQMEKFKNDKILYKIATDFDFPLA 125

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            ++ +ME  G++I+   L  +S EI KN+ +  + 
Sbjct: 126 PLLFKMEKRGVKINTSYLADMSHEIGKNMKNYNKK 160


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           L       F + T  + A +   I + A+   D +    F+        LS         
Sbjct: 420 LAEGTYIVFDVETTGLSAVYDTIIELAAVKIHDGEIIDRFESFANPHHPLSATTIDLTGI 479

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGI--SMRGFEDI 489
           + D        +E+L   K++ +N+  + + HN  +D   L     RYG+  +     D 
Sbjct: 480 TDDDVRNAPEVEEVLRRFKEWSQND--ILVAHNASFDMGFLNTGYKRYGLGKAANPVIDT 537

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++A+K+
Sbjct: 538 LELARFLLPEMKNHRLNTLAKKF 560


>gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
 gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
          Length = 1027

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 118/353 (33%), Gaps = 45/353 (12%)

Query: 252 DVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA------TTYDCDAANIEPVVLD 305
           + PI+ P  H   +  +      +L  L++ K   +VA        ++ D   I P    
Sbjct: 224 NAPISPPQRHFTRK-PDNSADSIWLPHLKYGKPNAKVALGHVHPPRFNADGTPI-PRGPR 281

Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365
                 +G  ++     +         +LS       ++  P     E+   LS    + 
Sbjct: 282 RGMYCAEGDPLDNPYHHEIMHADPPSHALSKPDPV--AKDNPPPALNEKDPWLST---DA 336

Query: 366 DSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
             +  +   + I+Q    L+       +  +   +   +      + +ST        + 
Sbjct: 337 CPFQWVSTKQQIEQLRDHLDEPRVNEIAIDLEHHSYRTYQGIVCLMQLSTRWGD----WI 392

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
           ++T+  D+  H                  L   F N   +K+ H   +D L L R  G+ 
Sbjct: 393 IDTLSDDVRQHA---------------ELLNSSFTNPDKVKVLHGANHDVLWLQRDLGLY 437

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQE 540
           +    D    + VL     SH +  +  ++ ++        ++  +   +I     ++  
Sbjct: 438 LVNLFDTYHATNVL--MFPSHGLNYLMARYCNFDAD-----KRYQLADWRIRPLPKEMLY 490

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +A  +++ +L ++  LR +L+    +    ++      V +       Q D D
Sbjct: 491 YARSDTHTLLFIYDNLRHELMEAGGIDAIRQVFIRSKQV-ATATYAKEQWDTD 542


>gi|326433004|gb|EGD78574.1| xeroderma pigmentosum group G complementing factor [Salpingoeca sp.
            ATCC 50818]
          Length = 1980

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 10/124 (8%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            V+   + FG P +     EA+   A      E++G    +I+ D D+          +  
Sbjct: 1175 VQHLLRLFGCPYVIAPQ-EAESQCAQL----EQQGLVSGVITDDSDVFLFGGRRVYRHVC 1229

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             +++       + +    G+    ++ L  L G   D  PG+ GIG  TA  ++ E+ N 
Sbjct: 1230 SQKKDMQLYLADDLENLAGLDRSSLIDLAYLLG--SDYTPGVAGIGPVTAVEVISEFHNA 1287

Query: 215  ENIL 218
            ++ L
Sbjct: 1288 DSTL 1291


>gi|262373686|ref|ZP_06066964.1| 3'-5' exonuclease [Acinetobacter junii SH205]
 gi|262311439|gb|EEY92525.1| 3'-5' exonuclease [Acinetobacter junii SH205]
          Length = 204

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 20/145 (13%)

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
           +QT      +     +   +N D    I       Q   +L+++    F   +       
Sbjct: 3   QQTALLSKEQIRTFPAFQNLNPDRIYVIQTLDQCLQIEAELKSVQVFGFDTESKPT---- 58

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
                      ++              L   +S ++     +  EIL++LK   ENE  L
Sbjct: 59  -------FKVGEKSTGPH---------LIQLSSLENAYLFQVNPEILAFLKPILENEQQL 102

Query: 464 KIGHNIKYDKLVLHRYGISMRGFED 488
           K+G  +K D     R GI   G  D
Sbjct: 103 KVGFGLKNDASGFRRKGIHPNGLID 127


>gi|330843627|ref|XP_003293751.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum]
 gi|325075888|gb|EGC29725.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum]
          Length = 368

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 54/126 (42%), Gaps = 17/126 (13%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVL------DSGRSSHDI 505
           LK+  E++  LK+ H+ + D  +L H+Y + +    DI +   ++      +        
Sbjct: 211 LKEVLESKVILKVVHDCRRDSEILYHKYQVLLTHVYDIQIAHAIILKKIDGNLPIRRFGF 270

Query: 506 ASI-----AQKWLSYTRKEILKSRK-----SSIPIDKISDSQVQEHAIENSNVILQLWLL 555
             +     ++++  Y      K+++     + I   +     + ++A  ++ ++L ++  
Sbjct: 271 NELTHIYTSKEYSKYCVDIKFKTKQLFDEDNKIWAKRPIPKLLLDYACLDAAILLPIYRT 330

Query: 556 LRPKLI 561
           + PKL 
Sbjct: 331 ITPKLQ 336


>gi|312076359|ref|XP_003140825.1| 3'-5' exonuclease [Loa loa]
 gi|307764011|gb|EFO23245.1| 3'-5' exonuclease [Loa loa]
          Length = 596

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 399 MDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           +D    + + +   + +       F    +    +     D    +T+  E  S +K+  
Sbjct: 337 IDNMEERVVGVDFKTVILGVQGEEFLSLIVLATTTQIVVFDVVHSDTILLE--SGVKEIL 394

Query: 458 ENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLD 497
           E+E  +K+ H+ K    +L HRY I++R   D  +   +L 
Sbjct: 395 ESEKIIKVIHDAKRVATLLAHRYAINLRKIFDTQVAHAILQ 435


>gi|326663749|ref|XP_003197653.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
           [Danio rerio]
          Length = 1022

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 27/186 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I     EA+   A    + +  G     I+ D D+              
Sbjct: 663 QELLRLFGVPFIVAP-MEAEAQCAALDRLDQTHGT----ITDDSDIWLFGGRHVYRNFFN 717

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           +    E   I  +  + G+   K++ L  L G   D   GIPG+GY T   +L E+    
Sbjct: 718 QNKYVEHYQIVDMQNQLGLDRSKLINLAYLLG--SDYTEGIPGVGYVTGMEILNEFPGAG 775

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED--CNGPR 271
           LE ++              + E+   A+ ++KL +   D  +   L +L +     N   
Sbjct: 776 LEPLVQ-------------LSEWWTEAQENKKLSVNPKDTKVKKKLRNLQIHPGFPNPAV 822

Query: 272 LISFLK 277
             ++L+
Sbjct: 823 AQAYLQ 828


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 80/236 (33%), Gaps = 38/236 (16%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI---AIAIST 413
             S +        K++N         KL+      F + T  + AF+++ I   AI +  
Sbjct: 360 YGSTFSTYRSKIEKVINFNGKNYIFDKLK---FVIFDLETTGLSAFYNEIIEFGAIVLQN 416

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI------LSYLKKFFENEHFLKIGH 467
             + +   F ++      S  T      +  + +        L  + K  ++   + + H
Sbjct: 417 GIEIEKHQFFIKPTGKIPSAITKITGISQKMIDETAISWEIALEKITKIIKD--SVLVAH 474

Query: 468 NIKYDKLVL-----HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           N  +D   L      +   S++    D + +S  L+    SH + ++A+++         
Sbjct: 475 NAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLKNVAKRY--------- 525

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                    +   D ++   A  ++ ++  +W     +L  + +  +    +    
Sbjct: 526 ---------EIEYDEEIAHRADYDAKILTTIWKNFLAELKSQNINDLTSLSEIKNS 572


>gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122]
 gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122]
          Length = 399

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 67/194 (34%), Gaps = 29/194 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I +TK ++++V    T    +          + +K   I + T ++          +   
Sbjct: 5   ITDTKQLEEFVAFARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERS--------VVVDP 56

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDI 489
           L VH               LS L+    +   +K+ H    D  ++ H   +      D 
Sbjct: 57  LKVHD--------------LSPLRDLMVDTSVVKVFHAATQDLDILFHELDVMPDPIFDT 102

Query: 490 MLMSYVL-DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            + + +L  + +  +   ++    L+     + K+   +    +   S    +A+E+   
Sbjct: 103 QVAAALLGQTVQVGYG--TLV---LNECGVRLKKADSFTDWARRPLSSSQINYALEDVVY 157

Query: 549 ILQLWLLLRPKLIV 562
           + +++  L  +L  
Sbjct: 158 LPRIYRQLTERLEA 171


>gi|109102065|ref|XP_001092423.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Macaca
           mulatta]
 gi|109102069|ref|XP_001092651.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 4 [Macaca
           mulatta]
          Length = 907

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLDMLECLGIPWVQAAG-EAEAMCAYLNAGGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDTF-LYGAQTVYRNFTMNTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L+Q
Sbjct: 212 KGVPGVGKEQALKLIQ 227


>gi|281212257|gb|EFA86417.1| xeroderma pigmentosum group G family protein [Polysphondylium
            pallidum PN500]
          Length = 1515

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                   FGIP I     EA+   A    +   +G  V    +D  L    S        
Sbjct: 1006 CHDLLSLFGIPFITSP-TEAEAQCAELFALGLIDG--VVTEDSDTLLFGKSSDMVVYRHL 1062

Query: 158  VKE-EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
             ++ EK  +  + K  G+  + ++ L  L G   D   G+ GIG   A  ++ E+  LE 
Sbjct: 1063 FQQPEKYCMSDIEKTIGVNRDDLINLAMLLG--CDYTAGVKGIGIVNAMEIISEFDTLEE 1120


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L+T     F + T  +   + K I +A   +   +  D   +       LS       H 
Sbjct: 417 LKTATYVVFDVETTGLSNQYDKIIELAAVKVKDGEIIDKFERFSNPHERLSETIKNLTHI 476

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGI--SMRGFEDI 489
           S D        +E+L+  K +  +   + + HN  +D           GI  S  G  D 
Sbjct: 477 SDDMLVDAPEIEEVLTEFKSWVGDA--IFVAHNASFDMGFIDTGYEHVGIGASTNGVIDT 534

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + +S  +++    H +  +A+K+
Sbjct: 535 LELSRTINTEYGKHGLNFLAKKY 557


>gi|221134772|ref|ZP_03561075.1| ribonuclease D [Glaciecola sp. HTCC2999]
          Length = 382

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 59/207 (28%), Gaps = 27/207 (13%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             Y  I +   + Q+ Q+       +          F+     + I              
Sbjct: 3   HPYLLIDSYDALLQYCQQAAQQSVIAVDTEFVRTRTFYPHIGLVQI-------------- 48

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMR 484
                   +   D    + +  + LS L +   N   +K+ H    D        G+   
Sbjct: 49  --------YDGVDIALIDPIAIDDLSPLSQLMTNPQVIKVLHACSEDLETFEFALGVMPE 100

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D  + + +   G +S     + +     T +   K    +  I +    +   +A E
Sbjct: 101 PLFDTQVAAQLAGLG-NSVGYGRLVELLQDITLE---KGESRTDWIRRPLSPEQLIYAAE 156

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYER 571
           +   +L  +  L  KL   + LH    
Sbjct: 157 DVLYLLPCYFKLAEKLEASQQLHWVYD 183


>gi|27363618|ref|NP_759146.1| ribonuclease D [Vibrio vulnificus CMCP6]
 gi|27359734|gb|AAO08673.1| ribonuclease D [Vibrio vulnificus CMCP6]
          Length = 390

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 33/211 (15%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
             +Y  I   +D+ +   K                                       + 
Sbjct: 19  RVNYQIITENQDLVRVCSKAREADVVMLDTEF-------------------------VRT 53

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
            T +  L +    D    + +   +L   S   +   +   +K+ H    D  V H   G
Sbjct: 54  RTYYPQLGLIQLFDGDTLSLIDPTVLTDMSAFTELLNDASVMKVLHACGEDLEVFHNALG 113

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                  D  +M+  L     S   A++ +++L+    E+ KS   +  + +    +  E
Sbjct: 114 AIPVPMVDTQIMAAFL-GHGLSTGFAALVEQYLNV---ELDKSESRTDWLARPLSDKQLE 169

Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +A  + + +L L+ +L  K++        ++
Sbjct: 170 YAAADVHYLLPLYEILLEKVMEAGWWQAAQQ 200


>gi|329890110|ref|ZP_08268453.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
 gi|328845411|gb|EGF94975.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
          Length = 384

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 26/200 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T I     +  + ++L      +          +  K   I       +   S     I 
Sbjct: 2   TPITTNDALIAFCERLAKAPYITVDTEFMRETTYWPKLCLI-------QAAASPTDAAII 54

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
             ++                 L        +E  LK+ H  + D  + ++ G   R   D
Sbjct: 55  DPMAEGLD-------------LEPFLDILRDESILKVFHAARQDVEIFNKLGAMPRPLFD 101

Query: 489 IMLMSYVLDSGRSSH-DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             + +  + +G        ++ ++ L   R+E+ K  + +    +        +A+ +  
Sbjct: 102 TQVAA--MAAGFGDQVSYEALVRQML---RQELDKGSRFTDWARRPLSDAQLTYALGDVT 156

Query: 548 VILQLWLLLRPKLIVEKLLH 567
            +  L+  LR +L  E  L 
Sbjct: 157 HLSALYPKLRDRLQKEGRLD 176


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 76/198 (38%), Gaps = 26/198 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------H 434
           KL+      F + T  + A   + I I A+   +  +  SF+        +S        
Sbjct: 423 KLKDATYVVFDVETTGLSAERDRLIEIAAVKVKNGTEIDSFESYINPQRPISELITRLTS 482

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISMRGFE--D 488
            + D      L KE+++    + + +  L + HN K+D   L     R G+  +     D
Sbjct: 483 ITNDDVRDAPLEKEVMTNFYNWLDKDDIL-VAHNAKFDLGFLDTCFERLGLENKNNASID 541

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +S   +     H ++++A+ +   L    + I  ++ ++    K+ D Q+ E  IE 
Sbjct: 542 TLFVSRAENKEAKRHGLSNLAKLYKVRLVQHHRAIYDTKATAEIFVKMLD-QLYELGIE- 599

Query: 546 SNVILQLWLLLRPKLIVE 563
                     +  K+ +E
Sbjct: 600 ------YHNEIDEKIDLE 611


>gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 695

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 41/220 (18%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAIS-------TLDQKDDTSFKVETIFIDLSVH 434
            +LE +    F   T  +     + + IA            +  DT           S  
Sbjct: 489 ARLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTE 548

Query: 435 TSQDSTGKNTLTKEILSYLKKF--FENEHFLKIGHNIKYDKLVLHRYGISM-----RGFE 487
               +        +I+   ++F  F     L + HN  +D   L R    +         
Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKFAEGAVL-VAHNAPFDMEFLRRAEPLIGRRFDNPIL 607

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D +L+S VL      H + ++  + L  T  E                 + +  AI ++ 
Sbjct: 608 DTVLLSAVLFGQSDVHSLDALTHR-LGITIPE-----------------EARHTAIGDTV 649

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
                +L L P L             +    V+S++   G
Sbjct: 650 ATADAFLKLLPMLQGRG--------FETFGAVLSEVRRHG 681


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 86/247 (34%), Gaps = 40/247 (16%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------ 433
           +KL       F + T  + A +   I + A+   D +    F+        LS       
Sbjct: 419 RKLTEDTYVVFDVETTGLSAVYDTIIELAAVKIHDGEIIDRFESFANPHHPLSATTINLT 478

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGI--SMRGFE 487
             + D        +E+L    ++  +   + + HN  +D   L     + GI  +     
Sbjct: 479 GITDDLVENAPEVEEVLKKFHEWAGDA--VLVAHNASFDMGFLNVGYKKMGIGKASNPVI 536

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWL----SYTRK--EILKSRKSSIPIDKISDSQVQEH 541
           D + ++  L     +H + ++A+K+      + R   +   +    + + K +D +  E+
Sbjct: 537 DTLELARFLYPDMKNHRLNTLAKKFDVELTQHHRAIYDAEATGYLLLKMLKHADEKGIEY 596

Query: 542 AIENSNVILQLWLLLRPKLI--------VEKLLHVYERLDKPMIDVVSQM---------- 583
             + ++ + Q     R +           E L ++++ +    ++   ++          
Sbjct: 597 HDQFNDNMGQGNAYQRARPAHCTLLAQTEEGLKNIFKLVSISHLEYFYRVPRIPRSVLQK 656

Query: 584 EITGIQI 590
              GI +
Sbjct: 657 HRAGILV 663


>gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
 gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
          Length = 1436

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 83/226 (36%), Gaps = 32/226 (14%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLS 432
           + L+      F + T  + A + K I ++   ++  +         D  F +    I+L+
Sbjct: 413 RALKGGKYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDEFEEFIDPGFPLSETTINLT 472

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             T++   G     KE+ +  ++F+E+   + +GHN+ +D   ++    R+G+       
Sbjct: 473 SITNEMVRGS-LSEKEVFTKFREFYEDA--IIVGHNVTFDIGFMNTGYLRHGMEEIKNPI 529

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            D + ++  L      + + ++A+K+   L +  + I  +  +            + + I
Sbjct: 530 IDTLTLARFLYPTLKGYRLNTLAKKFNVALEHHHRAIYDAETTGHLCYLFLKDAEERYGI 589

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           E           L   +             +P   V+      G++
Sbjct: 590 E-------YHDQLNDHMTENDAYKHA----RPNHAVLIAKTQAGLK 624


>gi|228861308|ref|YP_002854331.1| putative DNA repair protein [Soft-shelled turtle iridovirus]
 gi|194307588|gb|ACF42318.1| putative DNA repair protein [Soft-shelled turtle iridovirus]
          Length = 363

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 8/149 (5%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
             L+R +  AFG P  +    EA+        +   +   +TI S       L       
Sbjct: 162 YELMRRSLDAFGFPYADAPD-EAELCCVRLVQMGIAD-APMTIDSDALACGALHGVDVVY 219

Query: 155 YDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            D   E    +      +  G+  E+ + L  + G   D    +  +G  TA  L++ +G
Sbjct: 220 TDLHGETLTAMSTSKSKEALGLNGEQFMDLCVMCG--TDFNQRVHKLGPVTALKLIKAHG 277

Query: 213 NLENILINASRIK--QKKRRENILEYAET 239
           ++ENI   A  +   +  R   IL   + 
Sbjct: 278 SIENIPSAAPSMSCLEAVRTREILSGGDM 306


>gi|226288046|gb|EEH43559.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 826

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 111/327 (33%), Gaps = 25/327 (7%)

Query: 256 TIPLEHLILEDCNG-PRLISFLKAL--EFTKLINRVATTYDCDAANI--EPVVLDINTTE 310
              LE       +    L+    A   EFT +I +++ + +  +A +   P      +  
Sbjct: 79  EDDLEDNWRSIVDVIDELLEKADACLDEFTGVIKKLSPSQEQRSAALSKRPATAQFPSVY 138

Query: 311 NKGIA--IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
           + G +   + ++   +    +  S              P    L               Y
Sbjct: 139 DFGPSKISKPQLLFTSRPNNNDTSPFKPLLRSKPHAIAPLSESLGEAGPNDTITFYKHPY 198

Query: 369 TK-IVNTKDIQQWVQKLETIGSASFKIIT-------DTMDAFHSKP-IAIAIST-LDQKD 418
              I N+   Q        +   SF   T       + + +  ++   A  I+  L+  D
Sbjct: 199 ETEIRNSPYPQSTYSISPPVEYKSFDATTATFVDTLEGVHSMLAELKEATEIAIDLEHHD 258

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             S+      + +S              +E L  L + F +   LK+ H    D + L R
Sbjct: 259 VHSYHGLVCLMQISTRDQDWIVDTLKPWREELQVLNEVFTDPKILKVLHGSTMDIIWLQR 318

Query: 479 -YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             G+ + G  D    S  L+   RS   +  + +K++++  ++I +     +   +    
Sbjct: 319 DLGLYIVGLFDTYHGSVALNYPKRS---LKFLLEKFVNFKAEKIYQMADWRL---RPLLP 372

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE 563
            + ++A  +++ +L ++  +R  L+  
Sbjct: 373 GMFDYARSDTHYLLYIYDHIRNSLVEN 399


>gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
          Length = 695

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 41/220 (18%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAIS-------TLDQKDDTSFKVETIFIDLSVH 434
            +LE +    F   T  +     + + IA            +  DT           S  
Sbjct: 489 ARLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTE 548

Query: 435 TSQDSTGKNTLTKEILSYLKKF--FENEHFLKIGHNIKYDKLVLHRYGISM-----RGFE 487
               +        +I+   ++F  F     L + HN  +D   L R    +         
Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKFAEGAVL-VAHNAPFDMEFLRRAEPLIGRRFDNPIL 607

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D +L+S VL      H + ++  + L  T  E                 + +  AI ++ 
Sbjct: 608 DTVLLSAVLFGQSDVHSLDALTHR-LGITIPE-----------------EARHTAIGDTV 649

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
                +L L P L             +    V+S++   G
Sbjct: 650 ATADAFLKLLPMLQGRG--------FETFGAVLSEVRRHG 681


>gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
 gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
          Length = 1436

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 82/224 (36%), Gaps = 32/224 (14%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSVH 434
           L+      F + T  + A + K I ++   ++  +         D  F +    I+L+  
Sbjct: 415 LKGGKYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDEFEEFIDPGFPLSETTINLTSI 474

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T++   G     KE+ +  ++F+E+   + +GHN+ +D   ++    R+G+        D
Sbjct: 475 TNEMVRGS-LSEKEVFTKFREFYEDA--IIVGHNVTFDIGFMNTGYLRHGMEEIKNPIID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + ++  L      + + ++A+K+   L +  + I  +  +            + + IE 
Sbjct: 532 TLTLARFLYPTLKGYRLNTLAKKFNVALEHHHRAIYDAETTGHLCYLFLKDAEERYGIE- 590

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
                     L   +             +P   V+      G++
Sbjct: 591 ------YHDQLNDHMTENDAYKHA----RPNHAVLIAKTQAGLK 624


>gi|109899113|ref|YP_662368.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
 gi|109701394|gb|ABG41314.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
          Length = 400

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 69/225 (30%), Gaps = 28/225 (12%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           +   +  Y  I   + +  +  +L    + +           + +   I I         
Sbjct: 6   FVWKHVQYISITTDETLNAYCAQLAKAQAIAVDTEFVRTRTLYPQLGLIQI--------- 56

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
                        +  Q     + L     + LK    +E+ +K+ H+   D        
Sbjct: 57  -------------YDGQQIALIDPLEISDFTALKAILTDENIVKVLHSCSEDIETFICAL 103

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
            I  R   D    + +   G  S   A + +  L     ++ K    +  + +    +  
Sbjct: 104 DIVPRPIFDSQFAAAITGMG-PSLGYAKLVEVMLDI---QVDKGESRTDWLARPLSPKQC 159

Query: 540 EHAIENSNVILQLWLLLRPK-LIVEKLLHVYERLDKPMIDVVSQM 583
           ++A  +   + QL+  L  K L   +   V+  ++      +SQ+
Sbjct: 160 QYAAYDVLYLFQLYPTLCDKTLAQGRQAWVFAEMENLTRKKLSQV 204


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
          Length = 1441

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI---FIDLSVHTSQ--- 437
           LE      F + T  + A +   I +A +    K +   K E        LS  T Q   
Sbjct: 421 LEDATYVVFDVETTGLSAIYDSIIELA-AVKMHKGNVIDKFEEFIDPGHPLSATTIQLTG 479

Query: 438 ---DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
              D    +    ++L     F ++   + + HN  +D   L+    + G+    +   D
Sbjct: 480 ITDDMVRGSKSQAQVLKEFAAFTKD--TILVAHNASFDMGFLNTGYEKEGLEKTTQPVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S +L     SH + ++A+++
Sbjct: 538 TLELSRLLHPHLKSHRLNTLAKRY 561


>gi|170053309|ref|XP_001862614.1| DNA polymerase subunit gamma 1, mitochondrial [Culex
            quinquefasciatus]
 gi|167873869|gb|EDS37252.1| DNA polymerase subunit gamma 1, mitochondrial [Culex
            quinquefasciatus]
          Length = 1150

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 90/306 (29%), Gaps = 74/306 (24%)

Query: 699  VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758
            +     +  T+T R         +   +  +G ++R    +P   KL+ AD    EL I 
Sbjct: 745  IIPQVVVCGTLTRRAMEPTWMTASNAQRERIGSELRAMVQAPRGFKLVGADVDSQELWIA 804

Query: 759  AHIAKITPLYQVFENSLDIHRMV--------AAEIFGVNIEKVSPQ----MRRHAKTINF 806
            + +               IH             +    ++  V+ Q     R HAK IN+
Sbjct: 805  SVLGDGHAAA--------IHGATPLGWMTLSGTKAAKTDMHSVTAQAVGISRDHAKVINY 856

Query: 807  SIIYGIS---PFRLATQLRIPRSEAAD-----------------YIKRYFHRFPGIHEY- 845
            + IYG       RL  Q     S+A                   Y+K  F        Y 
Sbjct: 857  ARIYGAGQNFAERLLKQFNPTFSDAEARSKAIKMFALTKGKKFYYLKEEFRDELPEKPYS 916

Query: 846  --------------IEKTKNFVRQNGYVETIFGRRI----------------HYDEINSP 875
                          + +     R  G  E+    R+                       P
Sbjct: 917  AYEALKTAKICNKPVTEIFERARWEGGTESAMFNRLEEIADSPTPVTPFLGGRLSRALEP 976

Query: 876  KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935
            +    +      IN  +Q  A D     ++++   + D     +  L  HDE+ + V ++
Sbjct: 977  QEGTEDRFLPTRINWVVQSGAVDFLHLMLVAMRWLMGDR---VRFCLSFHDEVRYLVEDQ 1033

Query: 936  EITTAS 941
                A+
Sbjct: 1034 YAYRAA 1039


>gi|239502011|ref|ZP_04661321.1| 3'-5' exonuclease [Acinetobacter baumannii AB900]
          Length = 213

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           SE +         Q      +N+ +   I N++  +   ++L+      F     +   F
Sbjct: 2   SEASALLDKNSIQQLPPFENLNHQNIVVIENSEQCKTIEEELKAATLFGFDSE--SKPTF 59

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               +    ST       + + +     ++  T              L +L+    N   
Sbjct: 60  QVGEV----STGPHLIQLATEHKAYLFHVNSST--------------LKFLQPILSNPKQ 101

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFED 488
           +K+G  +K DK + H+ GI +    D
Sbjct: 102 IKVGFGLKNDKHIFHKKGIELESCVD 127


>gi|262280380|ref|ZP_06058164.1| 3'-5' exonuclease [Acinetobacter calcoaceticus RUH2202]
 gi|262258158|gb|EEY76892.1| 3'-5' exonuclease [Acinetobacter calcoaceticus RUH2202]
          Length = 213

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 20/146 (13%)

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           SE  P        Q      + + +   I N +  +    +L+T     F     +   F
Sbjct: 2   SEAFPLLDKASIQQLPPFENLTHQNIVVIENIEQCKNIENELKTAHFLGFDSE--SKPTF 59

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               +    ST       + + +     ++  T              L +L+    N   
Sbjct: 60  QVGEV----STGPHLIQLATEQKAYLFHVNSST--------------LKFLQPILSNPKQ 101

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFED 488
           +K+G  +K DK + H+ GI + G  D
Sbjct: 102 IKVGFGLKNDKHIFHKKGIELEGCVD 127


>gi|260776343|ref|ZP_05885238.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607566|gb|EEX33831.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
          Length = 371

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 63/206 (30%), Gaps = 27/206 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +++   +                  ++ +   I +               
Sbjct: 2   NYQIITRPDQLEKVCAQARNADVVMLDTEFVRTRTYYPQLGLIQL--------------- 46

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
                     +  +  +    + ++      ++   LK+ H    D  V +  +G     
Sbjct: 47  -------FDGETLSLIDPTVIDDMTAFVHLLKDTSVLKVLHACGEDLEVFNNSFGCLPYP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  LM+  L     S   AS+ + +L     E+ KS   +  + +    +  ++A  +
Sbjct: 100 MVDTQLMAAFL-GHGLSTGFASLVESYLGV---ELDKSESRTDWLARPLTDKQLDYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER 571
            + +L L+  L  ++         ++
Sbjct: 156 VHYLLPLYEKLLEEITQAGWWEAAQQ 181


>gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745]
 gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus
           pentosaceus ATCC 25745]
          Length = 1437

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 82/224 (36%), Gaps = 32/224 (14%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSVH 434
           L+      F + T  + A + K I ++   ++  +         D  F +    I+L+  
Sbjct: 415 LKGGKYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDQFEEFIDPGFPLSETTINLTSI 474

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G     KE+ +  ++F+E+   + +GHN+ +D   ++    R+G+        D
Sbjct: 475 TDEMVRGS-MSEKEVFTKFREFYEDA--IIVGHNVTFDIGFMNTGYLRHGMEEIKNPIID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + ++  L      + + ++A+K+   L +  + I  S  +            + + IE 
Sbjct: 532 TLTLARFLYPTLKGYRLNTLAKKFGVALEHHHRAIYDSETTGHLCYLFLKDAEERYGIE- 590

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
                     L   +   +         +P   ++      G++
Sbjct: 591 ------YHDQLNDHMTENEAYKHA----RPSHAILIAKTQAGLK 624


>gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 735

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 38/218 (17%)

Query: 384 LETIGSASFKIITDTMDAFHS-KPIAI-AISTLDQKDDTSFKVETIFIDLS--------- 432
           L  +    F   T  M+     + I I A+  ++ +   +   + +              
Sbjct: 540 LSDLTYTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRI 599

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM-RGFE 487
              S D        + +L  L  F  +   + + HN  +D   L     R G++  +   
Sbjct: 600 HGISDDMVRGQPNIEVVLPALHDFCND--TVLVAHNAAFDMRFLQLKEERTGVAFSQPVL 657

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D +L+S VL   + SH + SIA++ L    ++                   + +A+ ++ 
Sbjct: 658 DTLLLSGVLHPNQESHQLDSIAER-LGIGIED-------------------RHNALGDAC 697

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
              +++L + P L    +  + + L+       ++++ 
Sbjct: 698 ATAEVFLKMLPLLAQMGITTLRQALEASEKTYFARVKY 735


>gi|190344443|gb|EDK36119.2| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 755

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 107/304 (35%), Gaps = 29/304 (9%)

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIE----TEIDRDTTIKTSQFSSLSDQTS 339
           +++  +  +D +AAN       I   +     I+           T K     S  +  +
Sbjct: 116 MLHLDSEVHDMEAANALARSRIIKPQQFFKTKIDNSESAPFKPKLTSKPHALKSFEESCN 175

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTK----IVNTKDIQQWVQKLETIGSASFKII 395
             +   T      +      +Y I+   Y +    I   K  + W        +++  + 
Sbjct: 176 LRSGADTEFGKDPDYFPHPYEYEIDTLEYPESVLEISEPKKPKDW------TSTSAIWVE 229

Query: 396 TDT-MDAFHSKP---IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           T++ +    S       IA+  L+  D  S+      + +S    +D        ++ L 
Sbjct: 230 TESDLSQMVSDLSSQTEIAV-DLEHHDYRSYLGIVCLMQIS-SREKDWIIDTLKLRDSLV 287

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
            L + F N + +K+ H    D + L R  G+ +    D    S  L  G     +A + +
Sbjct: 288 VLNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASKKL--GLPRFSLAYLLE 345

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI---VEKLLH 567
            + ++      K  + +    +     +  +A  +++ +L ++  LR +L+    +K+  
Sbjct: 346 NYANFKTS---KKYQLADWRMRPLSGPMLSYARSDTHFLLYVYDQLRNQLLSSGSQKMKE 402

Query: 568 VYER 571
           V   
Sbjct: 403 VLHE 406


>gi|301119505|ref|XP_002907480.1| exosome complex exonuclease RRP6-like protein [Phytophthora
           infestans T30-4]
 gi|262105992|gb|EEY64044.1| exosome complex exonuclease RRP6-like protein [Phytophthora
           infestans T30-4]
          Length = 1465

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 99/291 (34%), Gaps = 16/291 (5%)

Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335
            +  +       V       A +      D     +    +    ++   +     + ++
Sbjct: 141 FEKNKKANKEEEVEKKVLRGAQDKPQDRFDEKIDNSDAPFVSKLREKVHALINGAATVVA 200

Query: 336 DQTSKINSEQTPQKLFLERLQK-LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
           D      + + P    ++ L+    Q   + + Y  I   K    WV   E +       
Sbjct: 201 DDEDDEMAPRNPYYPEIKGLKYAPWQLEASEEPYEMIGLDKVSYLWVDSEENLMQ----- 255

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
           +  ++ A  ++ IA+ +   +     S+   T  + +S    +D        +  L  L 
Sbjct: 256 MMKSLTAAEARVIAVDL---EHHSYRSYMGLTCLMQIST-AQEDFLVDTLALRGKLQTLN 311

Query: 455 KFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           + F +   +K+ H    D L L R  G+ +    D    + +L      +   S+A    
Sbjct: 312 QVFCDPEKVKVLHGSDMDILWLQRDLGLYIVNLFDTGRAARLLQ-----YPRFSLAYMLK 366

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +   +  K  + +    +  D  + ++A E++  +L ++  L+ +L+   
Sbjct: 367 RHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKELLQAG 417


>gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336]
 gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 65/222 (29%), Gaps = 38/222 (17%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           N+  +  I     + +  Q+ +     +         +F+ K   I +   +Q       
Sbjct: 10  NSPQFQLITTNDRLYEICQQAQQKTVIALDTEFVRTKSFYPKLGLIQLYDGEQVSLIDPF 69

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
               F                          +   N+   K+ H    D  V   Y   +
Sbjct: 70  ELNDFSP----------------------FIQLLANQKVTKVLHACSEDLEVFQHYFQQL 107

Query: 484 R-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D  +M+  L    +S  +A++ + +      EI K    +  + +        +A
Sbjct: 108 PTPMLDTQIMAAFLQ-HGNSIGLATLLKHYFKL---EIDKGISRTNWLARPLSDVQLHYA 163

Query: 543 IENSNVILQLWLLLRPKLIV-----------EKLLHVYERLD 573
             +   +L L+  ++ KL             E LL  Y ++ 
Sbjct: 164 AADVWYLLPLYQRMQQKLAQTSWQSAVQNDCENLLKKYTQIK 205


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Anoxybacillus flavithermus WK1]
          Length = 1430

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 93/280 (33%), Gaps = 50/280 (17%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------ 433
           ++L       F + T  + A +   I + A+   + +    F+        LS       
Sbjct: 408 RRLMDDTFVVFDVETTGLSAVYDTIIELAAVKVKNGEIIDRFESFANPHHPLSATTIELT 467

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFE 487
             + D        +E+L     + ++   + + HN  +D   L+        G       
Sbjct: 468 KITDDMLKDAPDVEEVLEKFYHWIDD--CVLVAHNATFDIGFLNAGFKKINRGKVTNPVI 525

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW--------------------LSYTRKEILKSRKSS 527
           D + ++  L     +H + ++ +K+                    L +  KE+ +     
Sbjct: 526 DTLELARYLYPELKNHRLNTLCKKFNIELTQHHRAIYDAEATGYLLIHLLKELDEKGIQY 585

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRP-------KLIVEKLLHVYERLDKPMIDVV 580
             +D+++++  ++ A + S       L+          KL+    ++ + R+ +    V+
Sbjct: 586 --MDQLNEASKEQGAFQRSRPFHATLLVQNEVGLKNLFKLVSFSHVNYFYRVPRIPRSVL 643

Query: 581 SQMEITGIQI----DQDLLKQVSAEISKNLLSLEENIYDL 616
            Q    GI +    D+  L +   +          + YD 
Sbjct: 644 -QQHREGILVGSGCDKGELFEAMMQKGVEEAEAIASFYDF 682


>gi|114576275|ref|XP_001136471.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
 gi|114576277|ref|XP_001136562.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
 gi|114576279|ref|XP_001136636.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan
           troglodytes]
 gi|114576281|ref|XP_001136714.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
          Length = 908

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLHMLECLGIPWVQAAG-EAEAMCAYLNAGGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDTF-LYGARTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L+Q
Sbjct: 212 KGVPGVGKEQALKLIQ 227


>gi|167536429|ref|XP_001749886.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|317374912|sp|A9VB27|FEN1_MONBE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|163771601|gb|EDQ85265.1| predicted protein [Monosiga brevicollis MX1]
          Length = 368

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 31/192 (16%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTI-ISTDKDLMQLVSPTTC 153
               R      GIP I     EA+   A         G  V    + D D +   +    
Sbjct: 138 NEQCRQLLTLMGIPFIIAP-TEAEAQCAELVK-----GGKVFATATEDMDALTFGTTVLL 191

Query: 154 LYDTVKEEKIDI--EHVIKKWGIPP--EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
            + T  E +     E  ++K G+    E+ + +  L G   D    I GIG + A  L++
Sbjct: 192 RHMTFSEARKMPIQEFRLQKGGLEMSMEEFIDMCILLG--CDYCDSIKGIGRQKAYQLIK 249

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKL-----VMLRTDVPITIPLEHLIL 264
           E+ N+E +L +      KK    I E    A  +R+L     V    +            
Sbjct: 250 EHKNIETVLKHLD---PKKY--VIPEDWHFAE-ARELFLRPDVTPAAEC-------EFKW 296

Query: 265 EDCNGPRLISFL 276
              +   L+ F+
Sbjct: 297 TTPDIDGLVKFM 308


>gi|148666016|gb|EDK98432.1| RIKEN cDNA 5830483C08 [Mus musculus]
          Length = 908

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  G+P ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLEMLECLGMPWVQAAG-EAEAMCAYLNASGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        I  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQEY 211
            G+PG+G + A  LLQ +
Sbjct: 212 KGVPGVGKEQALKLLQIF 229


>gi|26326927|dbj|BAC27207.1| unnamed protein product [Mus musculus]
          Length = 908

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  G+P ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLEMLECLGMPWVQAAG-EAEAMCAYLNASGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        I  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQEY 211
            G+PG+G + A  LLQ +
Sbjct: 212 KGVPGVGKEQALKLLQIF 229


>gi|26326997|dbj|BAC27242.1| unnamed protein product [Mus musculus]
          Length = 908

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  G+P ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLEMLECLGMPWVQAAG-EAEAMCAYLNASGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        I  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQEY 211
            G+PG+G + A  LLQ +
Sbjct: 212 KGVPGVGKEQALKLLQIF 229


>gi|148540148|ref|NP_796305.3| flap endonuclease GEN homolog 1 [Mus musculus]
 gi|166221585|sp|Q8BMI4|GEN_MOUSE RecName: Full=Flap endonuclease GEN homolog 1
 gi|60334795|gb|AAH90653.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
 gi|187957028|gb|AAI38159.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
 gi|187957572|gb|AAI38158.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
          Length = 908

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  G+P ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLEMLECLGMPWVQAAG-EAEAMCAYLNASGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        I  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQEY 211
            G+PG+G + A  LLQ +
Sbjct: 212 KGVPGVGKEQALKLLQIF 229


>gi|74196654|dbj|BAE34428.1| unnamed protein product [Mus musculus]
          Length = 739

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  G+P ++  G EA+ + A        +G     ++ 
Sbjct: 39  KTGRSHFKSVLRE----CLEMLECLGMPWVQAAG-EAEAMCAYLNASGHVDG----CLTN 89

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        I  +  K G+  + +V L  L G   D +P
Sbjct: 90  DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLG--CDYLP 146

Query: 195 -GIPGIGYKTAALLLQEY 211
            G+PG+G + A  LLQ +
Sbjct: 147 KGVPGVGKEQALKLLQIF 164


>gi|124028216|ref|YP_001013536.1| flap endonuclease-1 [Hyperthermus butylicus DSM 5456]
 gi|166973697|sp|A2BMI0|FEN_HYPBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|123978910|gb|ABM81191.1| Endonuclease [Hyperthermus butylicus DSM 5456]
          Length = 350

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 29/192 (15%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYI-----AEKEGFAVTIISTDKDLMQLVS---- 149
           +    A G+P ++    E +   A          A  + +   +  + + +  L      
Sbjct: 139 KKLLDAMGVPWVQAPA-EGEAQAAFMARRGDAWAAASQDYDSLLFGSPRLVRNLAITGRR 197

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P   +Y  +K E I+++ ++K  GI  E++V L  L G   D  P G+ GIG KTA  
Sbjct: 198 KLPRKDVYVEIKPELIELDKLLKALGITREQLVALGILIG--TDYNPDGVKGIGPKTALK 255

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           +++ + +   +L    R +       I EY     L+  +               L   +
Sbjct: 256 MVKAHRDPVKLLQGLPRHEFPTDPLKIYEY----FLNPPVTTDY----------KLEWRE 301

Query: 267 CNGPRLISFLKA 278
            +  ++   L  
Sbjct: 302 PDEKKVFEILVE 313


>gi|319405135|emb|CBI78741.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 206

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 24/170 (14%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
            S +    T  +     +   + +S+ D   D                 Q + G+N    
Sbjct: 20  DSVAIDTETLGLQPHRDRLCVVQLSSGDGTAD---------------IIQIAKGQNRAPN 64

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIA 506
                L    E++   KI H  ++D  +L   + +         + S +  +    H + 
Sbjct: 65  -----LVTLLEDKKITKIFHFGRFDLAILAHTFAVMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
            I  + L+     I K ++SS            E+A  +   + +L  + 
Sbjct: 120 EICSELLNVN---ISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIF 166


>gi|194018531|ref|NP_872431.3| flap endonuclease GEN homolog 1 [Homo sapiens]
 gi|194018535|ref|NP_001123481.1| flap endonuclease GEN homolog 1 [Homo sapiens]
 gi|290457644|sp|Q17RS7|GEN_HUMAN RecName: Full=Flap endonuclease GEN homolog 1
          Length = 908

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLHMLECLGIPWVQAAG-EAEAMCAYLNAGGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDTF-LYGAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L+Q
Sbjct: 212 KGVPGVGKEQALKLIQ 227


>gi|109658826|gb|AAI17205.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
 gi|313883890|gb|ADR83431.1| Gen homolog 1, endonuclease (Drosophila) (GEN1), transcript variant
           2 [synthetic construct]
          Length = 908

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLHMLECLGIPWVQAAG-EAEAMCAYLNAGGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDTF-LYGAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L+Q
Sbjct: 212 KGVPGVGKEQALKLIQ 227


>gi|109658672|gb|AAI17207.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
          Length = 908

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLHMLECLGIPWVQAAG-EAEAMCAYLNAGGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDTF-LYGAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L+Q
Sbjct: 212 KGVPGVGKEQALKLIQ 227


>gi|47077235|dbj|BAD18538.1| unnamed protein product [Homo sapiens]
          Length = 908

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLHMLECLGIPWVQAAG-EAEAMCAYLNAGGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDTF-LYGAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L+Q
Sbjct: 212 KGVPGVGKEQALKLIQ 227


>gi|311993512|ref|YP_004010377.1| rnh RNaseH ribonuclease [Acinetobacter phage Acj9]
 gi|295917469|gb|ADG60140.1| rnh RNaseH ribonuclease [Acinetobacter phage Acj9]
          Length = 354

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYD 156
           ++          I+++  EADD+IA  +      G+ V IIS+D D  QL        Y 
Sbjct: 116 IQELKDYMPYTVIDVRHCEADDVIAVLSQYMSSIGWKVRIISSDGDFTQLHKLKNVDQYS 175

Query: 157 TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201
            ++++      V  K G  PE+    + + GD  D +  I   G 
Sbjct: 176 PMQKK-----FVKVKTG-SPEEDCLTKVMKGDRKDCVASIKVRGD 214


>gi|260366009|ref|ZP_05778494.1| ribonuclease D [Vibrio parahaemolyticus K5030]
 gi|308111259|gb|EFO48799.1| ribonuclease D [Vibrio parahaemolyticus K5030]
          Length = 292

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 28/259 (10%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           Y   + +Y  I   KD++Q   +               +  F+ +   I +         
Sbjct: 12  YSEKHVNYQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFD------- 64

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
                        H S     + T     +  LK    +   LK+ H    D  V    +
Sbjct: 65  -----------GKHLSLIDPTELTDMTSFIELLK----DASVLKVLHACGEDLEVFQNAF 109

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G +     D  LM+  L     S   A++ +++L      + KS   +  + +    +  
Sbjct: 110 GCTPFPMVDTQLMAAFL-GHGLSTGFATLVEEYLGVA---LDKSESRTDWMARPLTQKQL 165

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A  + + +L L+  L  K+        V +  D  +   + +       +D     Q+
Sbjct: 166 DYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQESDLLVSKRIRETNEENAYLDIKGAWQL 225

Query: 599 SAEISKNLLSLEENIYDLS 617
                  L  L    Y  +
Sbjct: 226 KPSELAVLKPLATWRYREA 244


>gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis]
          Length = 680

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 67/210 (31%), Gaps = 26/210 (12%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    S+T +     +     +L      +  +   +   +      + +ST    
Sbjct: 106 HEDQDTFIHSFTWVDTVPKLAAAAMELYEQDRTALDVEHHSTHTYSGLTCLVQLSTG--- 162

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                             S+D    +   ++ +  L     N    K+ H    D + L 
Sbjct: 163 ------------------SKDYLIDSLALRQDMHLLAPVLSNPRICKVIHGGGNDAVWLQ 204

Query: 478 R-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           R +G+ +    D      VL  G     + ++ Q++      + L   + +    +   +
Sbjct: 205 RDFGLFLVNVFDTEKACQVL--GYHQRSLGALLQRFCGIQADKSLG--QRADWRRRPLSA 260

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           ++ ++A  +   +L +   L  +L+ E+ L
Sbjct: 261 ELIDYARRDVQHLLTIADRLGHELLAEQGL 290


>gi|18656515|gb|AAL77816.1|AF389451_23 putative DNA repair protein RAD2 [Tiger frog virus]
          Length = 390

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 8/149 (5%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
             L+R +  AFG P  +    EA+        +   +   +TI S       L       
Sbjct: 189 YELMRRSLDAFGFPYADAPD-EAELCCVRLVQMGIAD-APMTIDSDALACGALHGVDVIY 246

Query: 155 YDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            D   E    +      +  G+  E+ + L  + G   D    +  +G  TA  L++ +G
Sbjct: 247 TDLHGETLTAMSTSKSKETLGLNGEQFMDLCVMCG--TDFNQRVHKLGPVTALKLIKAHG 304

Query: 213 NLENILINASRIK--QKKRRENILEYAET 239
           ++ENI   A  +   +  R   IL   + 
Sbjct: 305 SIENIPSAAPSMSCLEAVRTREILSGGDM 333


>gi|17531757|ref|NP_496283.1| Cell-death-Related Nuclease family member (crn-3) [Caenorhabditis
           elegans]
 gi|3874231|emb|CAA90108.1| C. elegans protein C14A4.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|31747255|gb|AAP57299.1| cell death-related nuclease 3 [Caenorhabditis elegans]
          Length = 876

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 86/237 (36%), Gaps = 34/237 (14%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           +  L+  + L    + +   T I   + ++   + L ++   +  +    M ++      
Sbjct: 259 EAQLKSAECLKFTALKDTPLTMIDTKEKLEALTKTLNSVKEFAVDLEHHQMRSYLGLTCL 318

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           I IST D+              +  H                  L + F N   LK+ H 
Sbjct: 319 IQISTRDE------DFIIDPFPIWDHVG---------------MLNEPFANPRILKVFHG 357

Query: 469 IKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
              D L L R YG+ +    D  +        +  +   S+A  +L+    +++  ++  
Sbjct: 358 SDSDVLWLQRDYGVHVVNLFDTYVAM-----KKLKYPKFSLA--YLTLRFADVVLDKQYQ 410

Query: 528 IPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDV 579
           +     +   + +  +A E+++ +L  + +LR +L+ +    L +VY       I V
Sbjct: 411 LADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQDTKDLANVYSESSDLCIKV 467


>gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
 gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
          Length = 354

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 28/259 (10%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           Y   + +Y  I   KD++Q   +               +  F+ +   I +         
Sbjct: 12  YSEKHVNYQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFD------- 64

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
                        H S     + T     +  LK    +   LK+ H    D  V    +
Sbjct: 65  -----------GKHLSLIDPTELTDMTSFIELLK----DASVLKVLHACGEDLEVFQNAF 109

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G +     D  LM+  L     S   A++ +++L      + KS   +  + +    +  
Sbjct: 110 GCTPFPMVDTQLMAAFL-GHGLSTGFATLVEEYLGVA---LDKSESRTDWMARPLTQKQL 165

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A  + + +L L+  L  K+        V +  D  +   + +       +D     Q+
Sbjct: 166 DYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQESDLLVSKRIRETNEENAYLDIKGAWQL 225

Query: 599 SAEISKNLLSLEENIYDLS 617
                  L  L    Y  +
Sbjct: 226 KPSELAVLKPLATWRYREA 244


>gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
 gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
          Length = 372

 Score = 49.7 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 28/259 (10%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           Y   + +Y  I   KD++Q   +               +  F+ +   I +         
Sbjct: 12  YSEKHVNYQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFD------- 64

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
                        H S     + T     +  LK    +   LK+ H    D  V    +
Sbjct: 65  -----------GKHLSLIDPTELTDMTSFIELLK----DASVLKVLHACGEDLEVFQNAF 109

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G +     D  LM+  L     S   A++ +++L      + KS   +  + +    +  
Sbjct: 110 GCTPFPMVDTQLMAAFL-GHGLSTGFATLVEEYLGVA---LDKSESRTDWMARPLTQKQL 165

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A  + + +L L+  L  K+        V +  D  +   + +       +D     Q+
Sbjct: 166 DYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQESDLLVSKRIRETNEENAYLDIKGAWQL 225

Query: 599 SAEISKNLLSLEENIYDLS 617
                  L  L    Y  +
Sbjct: 226 KPSELAVLKPLATWRYREA 244


>gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
 gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
          Length = 325

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 28/259 (10%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           Y   + +Y  I   KD++Q   +               +  F+ +   I +         
Sbjct: 12  YSEKHVNYQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFD------- 64

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
                        H S     + T     +  LK    +   LK+ H    D  V    +
Sbjct: 65  -----------GKHLSLIDPTELTDMTSFIELLK----DASVLKVLHACGEDLEVFQNAF 109

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G +     D  LM+  L     S   A++ +++L      + KS   +  + +    +  
Sbjct: 110 GCTPFPMVDTQLMAAFL-GHGLSTGFATLVEEYLGVA---LDKSESRTDWMARPLTQKQL 165

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A  + + +L L+  L  K+        V +  D  +   + +       +D     Q+
Sbjct: 166 DYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQESDLLVSKRIRETNEENAYLDIKGAWQL 225

Query: 599 SAEISKNLLSLEENIYDLS 617
                  L  L    Y  +
Sbjct: 226 KPSELAVLKPLATWRYREA 244


>gi|153840116|ref|ZP_01992783.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
 gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
          Length = 341

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 28/259 (10%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           Y   + +Y  I   KD++Q   +               +  F+ +   I +         
Sbjct: 12  YSEKHVNYQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFD------- 64

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
                        H S     + T     +  LK    +   LK+ H    D  V    +
Sbjct: 65  -----------GKHLSLIDPTELTDMTSFIELLK----DASVLKVLHACGEDLEVFQNAF 109

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G +     D  LM+  L     S   A++ +++L      + KS   +  + +    +  
Sbjct: 110 GCTPFPMVDTQLMAAFL-GHGLSTGFATLVEEYLGVA---LDKSESRTDWMARPLTQKQL 165

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A  + + +L L+  L  K+        V +  D  +   + +       +D     Q+
Sbjct: 166 DYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQESDLLVSKRIRETNEENAYLDIKGAWQL 225

Query: 599 SAEISKNLLSLEENIYDLS 617
                  L  L    Y  +
Sbjct: 226 KPSELAVLKPLATWRYREA 244


>gi|66269349|gb|AAY43134.1| xeroderma pigmentosum G [Rana grylio virus 9808]
          Length = 363

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
             L+R +  AFG P  +    EA+        +   +   +TI S       L       
Sbjct: 162 YDLMRRSLDAFGFPYADAPD-EAELCCVRLVQMGIAD-APMTIDSDALACGALHGVDVVY 219

Query: 155 YDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            D   E    +      +  G+  E+ + L  + G   D    +  +G  TA  L++ +G
Sbjct: 220 TDLHGETLTAMSTSKSKEALGLNGEQFMDLCVMCG--TDFNQRVHKLGPVTALKLIKAHG 277

Query: 213 NLENILINASRI 224
           ++ENI   A  +
Sbjct: 278 SIENIPSAAPSM 289


>gi|164662529|ref|XP_001732386.1| hypothetical protein MGL_0161 [Malassezia globosa CBS 7966]
 gi|159106289|gb|EDP45172.1| hypothetical protein MGL_0161 [Malassezia globosa CBS 7966]
          Length = 150

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           +++  +P E+ V L  L G   D +  + G+G K A  L+Q++  LE IL +  +    K
Sbjct: 34  LEELDMPMEQFVDLCMLLG--CDYLDPVRGVGPKKALKLIQDHRTLERILEHLKQADDAK 91

Query: 229 RRENILEY 236
           + +    +
Sbjct: 92  KAKASDAH 99


>gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023]
          Length = 155

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           V   +G +I Y+ +       +       +   +Q  A D    ++    + +ED  ++T
Sbjct: 49  VPGKYGHQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAVSL----RRIEDAGIST 104

Query: 919 KMLLQIHDELVFEVPEEE--ITTASQIIVH 946
             ++ +HDE + EVPE E  +   + I+  
Sbjct: 105 --VMHVHDEAITEVPESESSVDKLNAILAE 132


>gi|304313993|ref|YP_003849140.1| flap structure-specific endonuclease [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587452|gb|ADL57827.1| flap structure-specific endonuclease [Methanothermobacter
           marburgensis str. Marburg]
          Length = 328

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 12/129 (9%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  GIP ++  G E +   +         G A  + S D D +   +P      T+
Sbjct: 136 KRLLELLGIPYVQAPG-EGEAQASFIVRR----GDAWAVASQDYDCLLFGAPRVVRNLTL 190

Query: 159 KEEKIDIEHV-----IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             +  + E +     ++   I  E++V L  L G   D   GI GIG +    L++E G+
Sbjct: 191 SGKLEEPEIIELESALRNLSITHEQLVDLALLVG--TDFNDGIKGIGARRGLKLIKEKGD 248

Query: 214 LENILINAS 222
           + +++    
Sbjct: 249 VFSVIEEID 257


>gi|225734432|gb|ACO25200.1| DNA repair enzyme RAD2 [Epizootic haematopoietic necrosis virus]
          Length = 364

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
             L+R +  AFG P  +    EA+        +   +   +TI S       L       
Sbjct: 162 YELMRRSLDAFGFPYADAPD-EAELCCVRLVQMGIAD-APMTIDSDALACGALHGVDVVY 219

Query: 155 YDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            D   E    +      +  G+  E+ + L  + G   D    +  +G  TA  L++ +G
Sbjct: 220 TDLHGETLTAMSTSKSKEALGLNGEQFMDLCVMCG--TDFNQRVHKLGPVTALKLIKAHG 277

Query: 213 NLENILINAS 222
           ++ENI   A+
Sbjct: 278 SIENIPSAAA 287


>gi|58265702|ref|XP_570007.1| PM-scl autoantigen [Cryptococcus neoformans var. neoformans JEC21]
 gi|57226239|gb|AAW42700.1| PM-scl autoantigen, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1016

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 73/208 (35%), Gaps = 27/208 (12%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +     +   +  +   + + + V+KL+     +  +                     
Sbjct: 297 KPVPPQSFDETPFEFVDTPEKLHRMVEKLKQAKEIAVDLE-------------------- 336

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS-YLKKFFENEHFLKIGHNIKYDKL 474
             D  S+   T  I +S   S        L KEI        F +   +K+ H    D +
Sbjct: 337 HHDMRSYAGFTCLIQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDII 396

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            L R + I +    D      VL+  + S  ++++ Q + ++   E  K  + +    + 
Sbjct: 397 WLQRDFEIFVVNLFDTYSACVVLEMPQRS--LSALLQHYCNF---EADKRYQRADWRIRP 451

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI 561
               +  +A  +++ +L ++  LR  L+
Sbjct: 452 LPDGMLYYARSDTHFLLFIYDNLRNALL 479


>gi|73980577|ref|XP_540093.2| PREDICTED: similar to CG10670-PA [Canis familiaris]
          Length = 908

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           KA R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KAGRSHFKSVLKE----CLDMLECLGIPWVQAAG-EAEAMCAYLNASGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K           +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTASSIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L+Q
Sbjct: 212 KGVPGVGKEQALKLIQ 227


>gi|162421247|ref|YP_001607571.1| exodeoxyribonuclease-9 [Yersinia pestis Angola]
 gi|162354062|gb|ABX88010.1| exodeoxyribonuclease-9 (Exodeoxyribonuclease IX)(Exonuclease IX)
           (Exo IX) [Yersinia pestis Angola]
          Length = 63

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
            LE +  N   I +K  R+ + ++ + A   +++  L+TD+ ++  L+ L L+
Sbjct: 11  TLEVLYQNLESIPEKW-RKKLQQHQQMAFTCKQIATLKTDLLLSGNLQQLRLK 62


>gi|242050364|ref|XP_002462926.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
 gi|241926303|gb|EER99447.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
          Length = 760

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 27/205 (13%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +Q P  + +Y  +     ++   + L    + +                        Q  
Sbjct: 4   AQCPKMSTTYNWVDTEAQLEHLARLLGEERAFAVDTE--------------------QHS 43

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
             SF   T  + +S   + D         +++  L+  F N    KI H    D L L R
Sbjct: 44  IRSFLGYTALMQISTQ-NDDYLIDTIALHDVMGILRPVFANSSICKIFHGADNDVLWLQR 102

Query: 479 -YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            + I +    D       L   +    +A + + +   T     K+ +      +    +
Sbjct: 103 DFHIYVVNMFDTAKACETL--SKPQKSLAYLLEVYCEVTTD---KTMQREDWRLRPLTPE 157

Query: 538 VQEHAIENSNVILQLWLLLRPKLIV 562
           + E+A  +++ +L +   L  +L  
Sbjct: 158 MIEYARTDAHYLLYIANCLASELHA 182


>gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
 gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
          Length = 468

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 41/210 (19%)

Query: 392 FKIITDTMDAFHSKPIAIAI-------STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
               T  +     + + I             ++ D            S      +     
Sbjct: 279 LDTETTGLLPHKDEIVQIGAVRIVNGRIVPGERMDQLVNPGRPIPPASSKVHGVTDAMVA 338

Query: 445 LTKEILSYLKKF--FENEHFLKIGHNIKYDKLVLHRY----GIS-MRGFEDIMLMSYVLD 497
               I    ++F  F  +  + + HN  +D   LHR+    G+       D +L+S VL 
Sbjct: 339 GAPGIAEAGRRFHTFARDSVI-VAHNAPFDMAFLHRHKTRMGVEWTHPILDTVLLSAVLF 397

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
               +H + ++  +                  +       ++  A+ ++    +++  + 
Sbjct: 398 GASQTHTLDALCDR------------------LAVTIPPNLRHTALGDAQATAEVFGRML 439

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           P L    +  +         DV+++ +  G
Sbjct: 440 PMLEARGMTTL--------EDVLAETKRHG 461


>gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 470

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 75/232 (32%), Gaps = 42/232 (18%)

Query: 371 IVNTKDIQQWVQK-LETIGSASFKIITDTMDAFHSKPIAIAI-------STLDQKDDTSF 422
           +++T   + +  + L  +    F   T  +     + + I             ++ DT  
Sbjct: 259 LLDTPGDEAFENRALSQLCFVVFDTETTGLLPHKDEIVQIGAVRVVKGRIVEGEQFDTLV 318

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF--FENEHFLKIGHNIKYDKLVLHRYG 480
                    S    + S        +I++  ++F  F  +  + + HN  +D   L R+ 
Sbjct: 319 NPGIPIPPASTRVHKVSDRMVQDAPDIITAGRQFHHFARDAVI-VAHNAPFDMAFLRRHA 377

Query: 481 ISMR-----GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             M         D +L+S VL     +H + ++  + L     E L              
Sbjct: 378 KRMEVEWDHPILDTVLLSAVLFGASETHTLDALCDR-LGIEIPETL-------------- 422

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
              +  A+ ++    +  + + P L    +        K   DV+++    G
Sbjct: 423 ---RHTALGDAVATAEALVRMLPMLQARGM--------KTFGDVIAETRKHG 463


>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
 gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 1469

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 79/236 (33%), Gaps = 38/236 (16%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S +        K++N         KL+      F + T  + AF+++ I      L  
Sbjct: 382 YGSTFSTYRSKIEKVINFNGKNYIFDKLK---FVIFDLETTGLSAFYNEIIEFGAVVLQN 438

Query: 417 K----DDTSFKVETIFIDLSV----HTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGH 467
                    F   T  I  ++      SQ    +  ++ EI L  + K  ++   + + H
Sbjct: 439 GIEIEKHQFFIKPTGKIPPAITKITGISQKMIDETAISWEIALEKITKIIKD--SVLVAH 496

Query: 468 NIKYDKLVL-----HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           N  +D   L      +   S++    D + +S  L+    SH + ++A+++     +EI 
Sbjct: 497 NAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLKNVAKRYEIEYAEEI- 555

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
                               A  ++ ++  +W     +L  + +  +    +    
Sbjct: 556 -----------------AHRADYDAKILTTIWKNFLAELKSQNINDLTSLSEIKNS 594


>gi|149728133|ref|XP_001503466.1| PREDICTED: Gen homolog 1, endonuclease (Drosophila) [Equus
           caballus]
          Length = 908

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLDMLECLGIPWVQAAG-EAEAMCAYLNASGYVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L+Q
Sbjct: 212 KGVPGVGKEQALKLIQ 227


>gi|45686018|ref|YP_003781.1| DNA repair enzyme RAD2 [Ambystoma tigrinum virus]
 gi|37722442|gb|AAP33187.1| DNA repair enzyme RAD2 [Ambystoma tigrinum stebbensi virus]
          Length = 364

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
             L+R +  AFG P  +    EA+        +   +   +TI S       L       
Sbjct: 162 YELMRRSLDAFGFPYADAPD-EAELCCVRLVQMGIAD-APMTIDSDALACGALHGVDVVY 219

Query: 155 YDTVKEEKIDIEHVIKK--WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            D   E    +  +  K   G+  E+ + L  + G   D    +  +G  TA  L++ +G
Sbjct: 220 TDLHGETLTAMSTLKSKEALGLNGEQFMDLCVMCG--TDFNQRVHKLGPVTALKLIKAHG 277

Query: 213 NLENILINAS 222
           ++ENI   A+
Sbjct: 278 SIENIPSAAA 287


>gi|134109437|ref|XP_776833.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259513|gb|EAL22186.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1016

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 73/208 (35%), Gaps = 27/208 (12%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +     +   +  +   + + + V+KL+     +  +                     
Sbjct: 297 KPVPPQSFDETPFEFVDTPEKLHRMVEKLKQAKEIAVDLE-------------------- 336

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS-YLKKFFENEHFLKIGHNIKYDKL 474
             D  S+   T  I +S   S        L KEI        F +   +K+ H    D +
Sbjct: 337 HHDMRSYAGFTCLIQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTIVKVFHGADSDII 396

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            L R + I +    D      VL+  + S  ++++ Q + ++   E  K  + +    + 
Sbjct: 397 WLQRDFEIFVVNLFDTYSACVVLEMPQRS--LSALLQHYCNF---EADKRYQRADWRIRP 451

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI 561
               +  +A  +++ +L ++  LR  L+
Sbjct: 452 LPDGMLYYARSDTHFLLFIYDNLRNALL 479


>gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter
           sphaeroides KD131]
          Length = 695

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 41/220 (18%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAIS-------TLDQKDDTSFKVETIFIDLSVH 434
            +LE +    F   T  +     + + IA            +  DT           S  
Sbjct: 489 ARLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRSIPPSSTE 548

Query: 435 TSQDSTGKNTLTKEILSYLKKF--FENEHFLKIGHNIKYDKLVLHRYGISM-----RGFE 487
               +        +I+   ++F  F     L + HN  +D   L R    +         
Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKFAEGAVL-VAHNAPFDMEFLRRAEPLIGRRFDNPIL 607

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D +L+S VL      H + ++  + L  T  E                 + +  AI ++ 
Sbjct: 608 DTVLLSAVLFGQSDVHSLDALTHR-LGITIPE-----------------EARHTAIGDTV 649

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
                +L L P L             +    V+S++   G
Sbjct: 650 ATADAFLKLLPMLQGRG--------FETFGAVLSEVRRHG 681


>gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
 gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329]
          Length = 388

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 28/259 (10%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           Y   + +Y  I   KD++Q   +               +  F+ +   I +         
Sbjct: 12  YSEKHVNYQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFD------- 64

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
                        H S     + T     +  LK    +   LK+ H    D  V    +
Sbjct: 65  -----------GKHLSLIDPTELTDMTSFIELLK----DASVLKVLHACGEDLEVFQNAF 109

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G +     D  LM+  L     S   A++ +++L      + KS   +  + +    +  
Sbjct: 110 GCTPFPMVDTQLMAAFL-GHGLSTGFATLVEEYLGVA---LDKSESRTDWMARPLTQKQL 165

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A  + + +L L+  L  K+        V +  D  +   + +       +D     Q+
Sbjct: 166 DYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQESDLLVSKRIRETNEENAYLDIKGAWQL 225

Query: 599 SAEISKNLLSLEENIYDLS 617
                  L  L    Y  +
Sbjct: 226 KPSELAVLKPLATWRYREA 244


>gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 288

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 82/237 (34%), Gaps = 36/237 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +   + + +  L      +    +++   +  +   + +ST  Q D     +      
Sbjct: 12  VSDPDALSRLLDALAGERVLALDTESNSFHVYRERVCLLQLSTRAQ-DFVVDPISVDVRP 70

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L                EIL         +    + H   YD   LHR YG  +    D 
Sbjct: 71  LG---------------EIL--------CDGREVVLHGADYDVRCLHREYGWRIPRLFDT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           M+ +  L  GR    ++++ +         + K+ + S    +        +A  +++ +
Sbjct: 108 MIAARRL--GRPGLGLSALVEAHFGVR---LSKAFQRSDWGRRPLTPDQLAYASLDTHFL 162

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV--SAEISK 604
           L L+ LL  +L     L    +  + +  VV++  +     D +  +++  S E+  
Sbjct: 163 LPLFDLLTGELATRGALEEAWKESQRIASVVARERV----FDPEGWRRIKGSRELDA 215


>gi|75288736|sp|Q64MA3|GENL1_ORYSJ RecName: Full=Flap endonuclease GEN-like 1; Short=OsGEN-L;
           Short=Protein OsGEN-like; AltName: Full=OsRAD
 gi|52075592|dbj|BAD46702.1| putative single-strand DNA endonuclease-1 [Oryza sativa Japonica
           Group]
 gi|62122402|dbj|BAD93194.1| putative nuclease [Oryza sativa Japonica Group]
 gi|62122736|dbj|BAD93331.1| putative nuclease [Oryza sativa Japonica Group]
 gi|215693373|dbj|BAG88755.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630495|gb|EEE62627.1| hypothetical protein OsJ_17430 [Oryza sativa Japonica Group]
          Length = 629

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 13/137 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                +  G+P +  +G E +            +G     I++D D   L    T +   
Sbjct: 131 CVELLEYLGMPVLRAKG-EGE----ALCAQLNNQGHVDACITSDSDAF-LFGAKTVIKVL 184

Query: 158 VKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                   E  ++  +    G+  ++MV +  L G   D + G+PG G +TA   +Q + 
Sbjct: 185 RSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHD-LHGVPGFGPETALRFVQLF- 242

Query: 213 NLENILINASRIKQKKR 229
           + +N+L     I +   
Sbjct: 243 DEDNVLAKLYEIGKGVY 259


>gi|296188946|ref|XP_002742570.1| PREDICTED: DNA repair protein complementing XP-G cells [Callithrix
           jacchus]
          Length = 1184

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 773 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 827

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 828 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 885

Query: 214 LENILI-----NASRIKQK--------KRRENILEYAETARL-SRKLVMLRTDVPITIPL 259
           LE +L      + ++   K        K ++ +     TA   +  +        +    
Sbjct: 886 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTAGFPNPAVAEAYLKPVVDDSQ 945

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 946 ASYLWGKPDLDKIREFCQRYF 966


>gi|125564417|gb|EAZ09797.1| hypothetical protein OsI_32084 [Oryza sativa Indica Group]
          Length = 630

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 13/137 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                +  G+P +  +G E +            +G     I++D D   L    T +   
Sbjct: 131 CVELLEYLGMPVLRAKG-EGE----ALCAQLNNQGHVDACITSDSDAF-LFGAKTVIKVL 184

Query: 158 VKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                   E  ++  +    G+  ++MV +  L G   D + G+PG G +TA   +Q + 
Sbjct: 185 RSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHD-LHGVPGFGPETALRFVQLF- 242

Query: 213 NLENILINASRIKQKKR 229
           + +N+L     I +   
Sbjct: 243 DEDNVLAKLYEIGKGVY 259


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
          Length = 1438

 Score = 49.3 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 95/291 (32%), Gaps = 26/291 (8%)

Query: 246 LVMLRTD----VPITIPLEHLILEDCNGPRLISFLK-------ALEFTKLINRVATTYDC 294
           L+   TD    V      E L +   +  ++    +           T+ ++++      
Sbjct: 258 LITDYTDSIRCVIFPKNNETLKISLNDWVKVNGIFEPDKFTGEFYIRTQKVDKIEPKISK 317

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
              N E   ++++   N          +D   +  +F   +   +      +    + E 
Sbjct: 318 RFDNAEKKRVELHAHTNMSEMSGVVSAKDLAKRAKEFGHSAVAVTDFGVVHSFPFAYKES 377

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG-SASFKIITDTMDAFHSKPIAIAIST 413
            +   +     ++Y      + I +   +L        F I T  +D +  K I I    
Sbjct: 378 DENF-KIIFGVEAYVVDDEQEMITKPADRLIEDEIYVVFDIETTGLDPYKDKIIEIGAIK 436

Query: 414 LDQK---DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE---ILSYLKKFFE-NEHFLKIG 466
           L  K   D+ S  +    ID+    +  +   N + K+   + + L KF E  +    + 
Sbjct: 437 LKGKEIIDEFSVFINPE-IDIPEEITALTNITNDMVKDAEKVETVLPKFLEFCKDTTVVA 495

Query: 467 HNIKYDKLVL----HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW 512
           HN K+D   +       G+       D +  + +L   +    +  IA  +
Sbjct: 496 HNAKFDVGFINQKAKNLGLEYSPSVIDTLHWARILLPEQKRFGLKYIANYF 546


>gi|14091405|gb|AAK53745.1|AF367980_2 P8.141B [Regina ranavirus]
          Length = 340

 Score = 49.3 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
             L+R +  AFG P  +    EA+        +   +   +TI S       L       
Sbjct: 138 YELMRRSLDAFGFPYADAPD-EAELCCVRLVQMGIAD-APMTIDSDALACGALHGVDVVY 195

Query: 155 YDTVKEEKIDIEHVIKK--WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
            D   E    +  +  K   G+  E+ + L  + G   D    +  +G  TA  L++ +G
Sbjct: 196 TDLHGETLTAMSTLKSKEALGLNGEQFMDLCVMCG--TDFNQRVHKLGPVTALKLIKAHG 253

Query: 213 NLENILINAS 222
           ++ENI   A+
Sbjct: 254 SIENIPSAAA 263


>gi|291335763|gb|ADD95366.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C243]
          Length = 72

 Score = 49.3 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963
           M+  +   + + + T  L  +HDEL +E   + I      +  S   A     NLR P+ 
Sbjct: 1   MVIANDLFKKNHVHTHQLAFVHDELQYECETKSIIRLKYGLEASAILAG-EYYNLRCPIA 59

Query: 964 VNIKVSNNWQEEN 976
              K  N W + +
Sbjct: 60  AESKHGNTWADVH 72


>gi|255027854|ref|ZP_05299840.1| hypothetical protein LmonocytFSL_18466 [Listeria monocytogenes
          FSL J2-003]
          Length = 43

 Score = 49.3 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 2  QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAI 38
          +   +L +VDG + ++RAFYAT +  +      G+P N +
Sbjct: 3  ENRENLLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGV 42


>gi|300706556|ref|XP_002995534.1| hypothetical protein NCER_101536 [Nosema ceranae BRL01]
 gi|239604679|gb|EEQ81863.1| hypothetical protein NCER_101536 [Nosema ceranae BRL01]
          Length = 563

 Score = 49.3 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 15/132 (11%)

Query: 90  MLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS 149
             L    +++   + F +P ++    E+D   A+       +G    +I+ D D+  L+ 
Sbjct: 387 DFLSIQSIIKDILKIFNMPYLDSPS-ESDAQCASLCKSGVVDG----VITEDSDI--LLH 439

Query: 150 PTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
                 +  ++     K D + + +  G+    ++ L  + G   D   GI GIG K A 
Sbjct: 440 GGVVYKNFFRKNKYITKYDPKKIYEVMGLSLNDLISLGYILG--SDYTVGIKGIGIKKAV 497

Query: 206 LLLQ--EYGNLE 215
             ++  ++ NL+
Sbjct: 498 EYIKSEDFKNLD 509


>gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 695

 Score = 49.3 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 41/220 (18%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAIS-------TLDQKDDTSFKVETIFIDLSVH 434
            +LE +    F   T  +     + + IA            +  DT           S  
Sbjct: 489 ARLEDLTYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTE 548

Query: 435 TSQDSTGKNTLTKEILSYLKKF--FENEHFLKIGHNIKYDKLVLHRYGISM-----RGFE 487
               +        +I+   ++F  F     L + HN  +D   L R    +         
Sbjct: 549 VHGITDAMVAEAPDIVEVGRRFHKFAEGAVL-VAHNAPFDMEFLRRAEPLIGRRFDNPIL 607

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D +L+S VL      H + ++  +      +E                   +  AI ++ 
Sbjct: 608 DTVLLSAVLFGQSDVHSLDALTHRIGITIPEE------------------ARHTAIGDTV 649

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
                +L L P L             +    V+S++   G
Sbjct: 650 ATADAFLKLLPMLQGRG--------FETFGAVLSEVRRHG 681


>gi|260433597|ref|ZP_05787568.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417425|gb|EEX10684.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
          Length = 424

 Score = 49.3 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 71/195 (36%), Gaps = 22/195 (11%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +  T+++  + +        +          ++SK   I ++   + +D++  V+ + 
Sbjct: 41  KTLKTTQELADFCRLAANFPYVTVDTEFLRERTYYSKLCLIQMAVPSEDEDSAVLVDPLA 100

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
             LS                 L  L + F+NE  +K+ H  + D  +     GI  +   
Sbjct: 101 DGLS-----------------LDPLYELFQNEDVVKVFHAARQDLEIFWVEAGIFPKPLF 143

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V   G       ++ +K     ++ + K+ + +    +      + +A+ +  
Sbjct: 144 DTQVAAMVCGFGEQV-GYETLVRK---ICKQGLDKTSRFTDWSRRPLSDAQKTYALADVT 199

Query: 548 VILQLWLLLRPKLIV 562
            + Q++  L  +L  
Sbjct: 200 HLRQIYEYLAAELEK 214


>gi|118398554|ref|XP_001031605.1| XPG I-region family protein [Tetrahymena thermophila]
 gi|89285936|gb|EAR83942.1| XPG I-region family protein [Tetrahymena thermophila SB210]
          Length = 648

 Score = 49.3 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 140/419 (33%), Gaps = 79/419 (18%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA 69
           +D  SF+Y+  Y       K  G        +   L ++++  +   I     V+FD   
Sbjct: 59  IDAMSFLYKGCYGYSYQLNK--GEQT---REYMLFLLRIVRVVKLNGIEP--IVVFD--G 109

Query: 70  VTFRNEIYPDYKANRPKIPE-------MLLPQ---LPLVR-----------------LAT 102
              + + +   K  R +  E        L+ Q      ++                    
Sbjct: 110 RNLKAKDFTIKK--REETKEKNLQKANELMEQGNKNEAIKYYQRCLRVNKEMIYDTIDML 167

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-- 160
           +A  I  +    +EAD  +A      + +      I+ D DL+    P      ++    
Sbjct: 168 RANNIEYLISP-YEADSQVAYLVKSQQAD----FAITEDSDLICYSCPKIVFKLSLDSSC 222

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQA---------LTGDSIDNIPGIPGIGYKTAALLLQEY 211
           + +D+    ++  +  E + C  +               D  P I GIG K A  L    
Sbjct: 223 QYLDLLKYCERSNLQSEALRCFLSQNELNRIYICIMAGSDYFPSIQGIGIKKAIDLFYRC 282

Query: 212 GNLENILINASRIKQKKRRENILEYAET-----ARLSR----------KLVMLRTDVPIT 256
           G  +N++       + K R  I E  +      A + R          +L+     VP  
Sbjct: 283 GTFKNVMQKLR--LEPKIRPLIPENYDMFVEKVALIFRYQRVFDMNTKQLIT-LNPVPED 339

Query: 257 IPLEH---LILEDCNGPRLISFLKA---LEFTKLIN-RVATTYDCDAANIEPVVLDINTT 309
              E    +  +  +   +   L+    LE  +L+   + T +   +   + ++   N +
Sbjct: 340 FSQEDERLIGEQIPHFDEVSQGLRHIYSLEKRELVEIDMKTYFTSKSEKKKFIIQAQNNS 399

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368
            N   +   + + +  +  +Q+   SDQ  K+   Q  Q+L   + ++  +     D+Y
Sbjct: 400 TNNDFSNLQQTNENEKLHYNQYQVNSDQIKKLLKPQEVQQLQELKKKQEEELYELIDTY 458


>gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
           yFS275]
          Length = 782

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 105/284 (36%), Gaps = 28/284 (9%)

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
           F     ++   +  +     P +  +    N  + +E  +D+    K  Q S      ++
Sbjct: 131 FNIPKPQLRFKHPVNNHPTTPWLWKLTEKPNALVPLEKLLDQVRADKALQLSLPHPYEAE 190

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
           I +   P++L  E    + +  +       + N++ +   +++L+     +  +      
Sbjct: 191 IKNSSRPKQL-YETKNPVQKGAVEETDPIWVDNSESLHSMLEELKQATEIAVDLE----- 244

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
                            D  S+      + +S   +QD        +E L  L   F + 
Sbjct: 245 ---------------HHDYRSYSGFVCLMQIST-RNQDWIVDTLELREELECLNIVFTDP 288

Query: 461 HFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
             +K+ H    D + L R +G+ + G  D    +  L  G   H +A + +K+  +   E
Sbjct: 289 KIIKVLHGATMDVIWLQRDFGLYLVGLFDTYYATKAL--GFEGHGLAFLLKKYCQF---E 343

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
             K  + +    +    ++ ++A  +++ +L ++  LR +L+ +
Sbjct: 344 ADKRYQMADWRIRPLPKEMLKYAQSDTHFLLYVFDCLRVELLEQ 387


>gi|156093896|ref|XP_001612986.1| DNA repair endonuclease [Plasmodium vivax SaI-1]
 gi|148801860|gb|EDL43259.1| DNA repair endonuclease, putative [Plasmodium vivax]
          Length = 1473

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 76   IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135
            +  +YK  +    E+       +++    FGIP ++                        
Sbjct: 1116 LMKEYKKLKKNNIEINEEMNEDIKILLNMFGIPYVQSPCEAEAQCSYLNCKNYCDA---- 1171

Query: 136  TIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDN 192
             IIS D D++     T       ++   E  + + +  K G+  ++++ L  L G   D 
Sbjct: 1172 -IISDDSDVLVFNGKTVIKNFFNRKKTVEVYERKLIEDKLGLYQDELINLSLLCG--CDY 1228

Query: 193  IPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
              G+ G+G   A  +++ +   E++         KK +E
Sbjct: 1229 TIGVHGVGIVNALEIIKAFPTFEDL---------KKLKE 1258


>gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 711

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 42/149 (28%), Gaps = 26/149 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSK---------------PIAIAISTLDQKDDTSFKVETIF 428
           L+++    F   T  +                         + + +     +       +
Sbjct: 513 LKSLTFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRSIPAESIRY 572

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM----- 483
             ++     D          +L   + +  +   + + HN  +D   L      M     
Sbjct: 573 HGITDEMVIDKPPAGV----VLPQFRSYVADA--VLVAHNAAFDLKFLRMREKEMGVRFD 626

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
               D M++S  LD   + H +  I +++
Sbjct: 627 SPVLDTMILSNFLDGPEAGHSLDDICERY 655


>gi|326916541|ref|XP_003204565.1| PREDICTED: flap endonuclease GEN homolog 1-like, partial [Meleagris
           gallopavo]
          Length = 897

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 16/140 (11%)

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
              +  G+P ++  G EA+ + A        +G     I+ D D+  L    T   +   
Sbjct: 119 QLLECLGVPWVQAAG-EAEAMCAYLNAKGHVDG----CITNDGDVF-LYGAQTVYRNFAM 172

Query: 160 EEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQEYG 212
             K        +  + +K G   E ++ L  L G   D +P G+PG+G + A  L++   
Sbjct: 173 NSKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLG--CDYLPKGVPGVGKEQALKLIETLR 230

Query: 213 NLENILINASRIKQKKRREN 232
             +N+L    + +++   +N
Sbjct: 231 G-QNLLQRFEQWREQSEHDN 249


>gi|302806194|ref|XP_002984847.1| hypothetical protein SELMODRAFT_423862 [Selaginella moellendorffii]
 gi|300147433|gb|EFJ14097.1| hypothetical protein SELMODRAFT_423862 [Selaginella moellendorffii]
          Length = 137

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETARLSRKL 246
           + D +PG+PG    TA  L++++G+LEN++       + +   ++ + E++     + ++
Sbjct: 40  AADGVPGVPGF---TALKLMRKHGSLENLVSAAAIRTVVKPYMQDALKEHSVLLEKNLEV 96

Query: 247 VMLRTDVPITIPLEHLILEDCNGP-RLISFLKA 278
           + LR D+ + +P+E  +  D +     + +L+ 
Sbjct: 97  LSLRRDINVELPVEWCLSRDKSNDLAALQWLEK 129


>gi|83285930|ref|XP_729939.1| 3'-5' exonuclease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489160|gb|EAA21504.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii]
          Length = 284

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRS 501
           + L K +++ +KK  EN+  LK+ H+ + D   L+    I      D +    +L   + 
Sbjct: 21  DLLNKSVINSVKKIIENKKTLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLEKKK 80

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----------HAIENSNVILQ 551
            +DI  I+   L +    +     ++I  +   + ++ E          +A++N   +L 
Sbjct: 81  ENDIYQISFLNLLHDYLGVKDDCLNNIKKEMYKNEKIWEIRPLSKISIIYALKNVKYLLP 140

Query: 552 LWLLLRPKLIVEKLLH 567
           ++ +    +  +++L 
Sbjct: 141 IYKIFDKLVSKKEVLE 156


>gi|169622755|ref|XP_001804786.1| hypothetical protein SNOG_14605 [Phaeosphaeria nodorum SN15]
 gi|160704846|gb|EAT78145.2| hypothetical protein SNOG_14605 [Phaeosphaeria nodorum SN15]
          Length = 668

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
           S       T   + +    L    S  + GK T   E +  LK   E+   LK+  +++ 
Sbjct: 436 SLGAAGFYTPAPITSATATLPDPVSATAAGKQTCPTEPVLTLKSVLESPTILKVFFDVRN 495

Query: 472 D-KLVLHRYGISMRGFEDIMLMSY-------------VLDSGRSSHDIASIAQKWLSYTR 517
           D   +   + I+++  E + LM               +      ++ ++S A+++    +
Sbjct: 496 DSDGLFAHFEIALKCVEHLQLMELATRSRKPRHHLVGLAWCMEHNNGMSSEARRYAGSVK 555

Query: 518 KEIL------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           K+ +      K    ++  +++    V E+ +++   + +LW     ++  
Sbjct: 556 KQGIKLFCPGKGGSYAVFAERLLQPIVLEYCVQDVVHMPKLWKTYHARMDA 606


>gi|156097777|ref|XP_001614921.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148803795|gb|EDL45194.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
          Length = 414

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 18/203 (8%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             + N K+     +++      +       +  +    I    +    ++ T  + E I 
Sbjct: 84  KIVENEKEGNDAAEEINQNDIIAVDFEGTNLGKYGKVCIMQVYTEERTREGTPPQSECI- 142

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
                 + +     + L   ++  +KK  EN+  LK+ H+ + D   L+   GI      
Sbjct: 143 ------SREKYYIFDLLKMSVIKSVKKIIENKKTLKLVHDCREDSSALYNQLGIKFENVY 196

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE------- 540
           D      +L     S+DI  ++   L      I     SSI  +   + ++ +       
Sbjct: 197 DTSRAHMLLMEKNKSNDIYQVSFLQLLNDYLGIKDECLSSIKKEMYKNEKIWQVRPLSKM 256

Query: 541 ---HAIENSNVILQLWLLLRPKL 560
              +A++N   +  L+ +    L
Sbjct: 257 SIIYALKNVKYLFPLYRIFDNML 279


>gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria
           pomeroyi DSS-3]
 gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria
           pomeroyi DSS-3]
          Length = 470

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 15/134 (11%)

Query: 392 FKIITDTMDAFHSKPIAIAI-------STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
           F   T  +     + + I             ++ D            S      S     
Sbjct: 281 FDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQLVDPGRPIPPASTRVHGVSDAMVA 340

Query: 445 LTKEILSYLKKF--FENEHFLKIGHNIKYDKLVLHRYG-----ISMRGFEDIMLMSYVLD 497
              +I++  ++F  F  +  + + HN  +D   L R+G            D +L+S VL 
Sbjct: 341 GAPDIVAAARQFHQFARDAVI-VAHNAPFDIAFLRRHGPRCGLDWDHPILDTVLLSAVLF 399

Query: 498 SGRSSHDIASIAQK 511
               +H + ++  +
Sbjct: 400 GASETHTLDALCDR 413


>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
 gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
          Length = 295

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 28/198 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I    ++   V++L T    +    +++  A+  +   I IS+ ++        + I   
Sbjct: 7   IEKPSELDALVRQLSTARHLAVDTESNSFYAYFDRVCLIQISSPER--------DYIIDP 58

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           LS+                LS L + FEN    K+ H    D L L R +     G  D 
Sbjct: 59  LSLKD--------------LSVLGRLFENPRIEKVLHAASNDVLGLRRDFQFRFNGLFDT 104

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            +   +L      +    +++   ++    + K  +      +       ++A  +++ +
Sbjct: 105 AIACKLL-----GYKQLGLSKILETHFGVSLNKRWQRYDWGKRPLVPDQLDYARLDTHYL 159

Query: 550 LQLWLLLRPKLIVEKLLH 567
           + L  +L   L   +L  
Sbjct: 160 IALRHMLAADLQSRELWA 177


>gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367]
 gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           brevis ATCC 367]
          Length = 1445

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 93/247 (37%), Gaps = 43/247 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT------ 435
           L+      F + T  + A + K I ++   ++ ++  D   +       LS  T      
Sbjct: 420 LDGATYVVFDVETTGLSAIYDKVIELSAVKMEHQNVVDQFEEFIDPGFPLSEQTTNLTSI 479

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDI 489
           + D    +   +E+    ++F  +   + +GHN+ +D   +     R+G++       D 
Sbjct: 480 TDDMVAGSKSEEEVFKLFREFCGDA--IIVGHNVTFDVGFMNTGYQRHGMAEISNPIIDT 537

Query: 490 MLMSYVLDSGRSSHDIASIAQKW---LSYTRKEI-------------LKSRKSSIPI--- 530
           + ++  L     S+ + ++A+++   L +  + +             LK  +    I   
Sbjct: 538 LTLARFLYPTLKSYRLNTLAKRFHVSLEHHHRAVYDAESTGHLNYLFLKDAEDRYDIQYH 597

Query: 531 ----DKISDSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQM 583
               D ++D+   +HA  N  ++L           KL+    +  Y R+ +    V+ + 
Sbjct: 598 DQLNDHMTDNDAYKHARPNHAILLAKTQAGLKNMFKLVSASNVDYYYRVPRVPRSVLEE- 656

Query: 584 EITGIQI 590
              GI +
Sbjct: 657 YREGIIV 663


>gi|332841605|ref|XP_509723.3| PREDICTED: DNA repair protein complementing XP-G cells isoform 2 [Pan
            troglodytes]
          Length = 1640

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 1227 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 1281

Query: 159  KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
            K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 1282 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 1339

Query: 214  LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
            LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 1340 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 1399

Query: 260  EHLILEDCNGPRLISFLKALE 280
               +    +  ++  F +   
Sbjct: 1400 GSFLWGKPDLDKIREFCQRYF 1420


>gi|77640971|ref|NP_146975.2| flap endonuclease-1 [Aeropyrum pernix K1]
 gi|150421551|sp|Q9YFY5|FEN_AERPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|116062210|dbj|BAA79026.2| flap structure-specific endonuclease [Aeropyrum pernix K1]
          Length = 350

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 28/192 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEK-----EGFAVTIISTDKDLMQLVS---- 149
           +    A G+P ++    E +   A      +      + +   +  + + +  L      
Sbjct: 139 KELLDAMGMPWVQAPA-EGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRR 197

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG-IPGIGYKTAAL 206
             P    Y  +K E I++E ++ K GI  E+++ +  L G   D  PG + G G KTA  
Sbjct: 198 KLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLG--TDYNPGGVRGYGPKTALR 255

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L++  G+   +L +  R   +   + + +  E       L    TD      +E      
Sbjct: 256 LVKSLGDPMKVLASVPR--GEYDPDYLRKVYE-----YFLNPPVTD---DYKIE---FRK 302

Query: 267 CNGPRLISFLKA 278
            +  ++   L  
Sbjct: 303 PDQDKVREILVE 314


>gi|85094529|ref|XP_959900.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
 gi|28921357|gb|EAA30664.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
 gi|40804632|emb|CAF05892.1| related to nucleolar 100K polymyositis-scleroderma protein
           [Neurospora crassa]
          Length = 822

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 82/228 (35%), Gaps = 33/228 (14%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
           ++I +   P+ ++ +R +     PI++ S   +   + + + +++L+     +  +    
Sbjct: 200 TEIKTTPYPEHVYKKR-EPKEYLPIDSTSAIWVDTYEGVLEMLEELKQAKEIALDLE--- 255

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
                              D  S+      + +S              +  L  L + F 
Sbjct: 256 -----------------HHDFRSYTGLLSLMQISTREKDWVIDTLQPWRHKLEVLNEVFA 298

Query: 459 NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT 516
           N + +K+ H    D + L R  G+ + G  D      VL   GRS          +L   
Sbjct: 299 NPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDTYHACAVLGYPGRS--------LGYLLSK 350

Query: 517 RKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             E    +K  +   +I     ++  +A  +++ +L ++ ++  +L+ 
Sbjct: 351 FAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFDMIINELVE 398


>gi|261253420|ref|ZP_05945993.1| ribonuclease D [Vibrio orientalis CIP 102891]
 gi|260936811|gb|EEX92800.1| ribonuclease D [Vibrio orientalis CIP 102891]
          Length = 371

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 64/206 (31%), Gaps = 27/206 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I  +  +++  Q    +              ++ +   I +               
Sbjct: 2   NYQIITQSSQLEEVCQSARNVDVVMLDTEFVRTRTYYPQLGLIQL--------------- 46

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
                     +  +  +    E ++   +  ++   LK+ H    D  V H  +G     
Sbjct: 47  -------FDGEKLSLIDPTVIEDMTAFVELLKDTSVLKVLHACGEDLEVFHNSFGCLPYP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  LM+  L     S   A++ + +L     E+ KS   +  + +    +  E+A  +
Sbjct: 100 MVDTQLMAAFL-GHGLSTGFAALVENYLGV---ELDKSESRTDWLARPLSDKQLEYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER 571
              +  L+  L  K+         ++
Sbjct: 156 VYYLQPLYEQLFEKITQAGWWEAAQQ 181


>gi|251777997|ref|ZP_04820917.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082312|gb|EES48202.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 974

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 73/201 (36%), Gaps = 21/201 (10%)

Query: 392 FKIITDTMDAFHSKPIAI--------AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
             I T  +D  + + I I        +++T +        V      L     ++    +
Sbjct: 14  LDIETTGLDENNCEIIEIGAVKIKNLSVTTYEVLIRPKGNVPVSIYKLCQGLKEEELMNS 73

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSS 502
              ++I   L  F E+     I HN  +++  L  +   ++    D M +S +L+  R  
Sbjct: 74  RHLEDIKKELLVFLED--LPLICHNGGFERKFLSYHIPEIKNQIFDSMELSAILEPWRKE 131

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS---------NVILQLW 553
           +++ S+ +      + E  +  + SI   K+ +S +    I            N+I + +
Sbjct: 132 YNLDSLIKSITILDKDEFHRGLEDSIDTLKVVNSLLCREWIREESKKKNKSLYNIIDKDY 191

Query: 554 LLLRP-KLIVEKLLHVYERLD 573
             L+  +     L  +   ++
Sbjct: 192 EFLKYWEWKEYLLKPILFNIE 212


>gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
 gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
          Length = 1432

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 36/226 (15%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           + +   N S+  ++N +  Q     L+     SF I T  +   + + I    S +    
Sbjct: 375 TTFSAINKSHQAVLNYQHDQV----LKQADYISFDIETTGLSPRYHEIIEFGASIIKNGS 430

Query: 419 ---------DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
                      S  + +   +L+  T +    +    K  L  + K FEN+  + + HN 
Sbjct: 431 IVAREQFFIKASKPLSSFTTNLTGITDKMLQEEGIELKTALERILKLFENK--IALAHNA 488

Query: 470 KYDK-----LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           ++D       +L   Y I    F D +++S ++   +S H +       L          
Sbjct: 489 QFDMNFVFQKLLDNCYAIPSISFVDTLMISRIIFPNKSKHRLGDYTSN-LGINY------ 541

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
                    + D+   ++  E         +    +L +  L  ++
Sbjct: 542 --------SVDDAHRADYDAEILAQAWIASISHLAQLNLNNLSDLH 579


>gi|83951561|ref|ZP_00960293.1| ribonuclease D [Roseovarius nubinhibens ISM]
 gi|83836567|gb|EAP75864.1| ribonuclease D [Roseovarius nubinhibens ISM]
          Length = 385

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 71/194 (36%), Gaps = 22/194 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T  +  + Q+       +          ++SK   + ++   + D  +  V+ +  
Sbjct: 3   TITTTDALADYCQEARKHPYVTVDTEFLRERTYYSKLCLVQLAMPGEDDAGAVLVDPLAE 62

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
            LS                 L  L + F +E+ +K+ H  + D  + +   G+  +   D
Sbjct: 63  GLS-----------------LEPLYELFRDENVVKVFHAARQDLEIFYVDAGLIPQPLFD 105

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + + V   G       ++ ++     ++++ KS + +    +      +++A+ +   
Sbjct: 106 TQVAAMVCGFGEQV-GYETLVRR---IAKEQLDKSSRFTDWSRRPLSEAQKKYALGDVTH 161

Query: 549 ILQLWLLLRPKLIV 562
           + +++  L  +L  
Sbjct: 162 LRRIYEYLAAELEK 175


>gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 894

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 86/272 (31%), Gaps = 59/272 (21%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVETIFIDLS---- 432
             ++          F   T  +D F    I I+ I   + K         I+ D      
Sbjct: 501 NDFLNAFHQQEIVVFDTETTGLDVFTDDIIEISAIKIKEGKIVGEPLDLYIYTDKPILQK 560

Query: 433 ----------VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                     ++  + ++G+     + L+   +F +N     IGHNI YD  +L      
Sbjct: 561 LGTKENPLYEIYHKKLASGELLKANDALNKFIEFVDNSTL--IGHNINYDYHILDNCLKR 618

Query: 483 MRG---------FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
                       + D + +  +L+    S+ +  + +++        L+   S   ID +
Sbjct: 619 YANDCMDNHSYKYFDSLKLIRLLEPSLRSYKLEYLLERFQ-------LEGINSHQSIDDV 671

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
                       + + L  +   + +L+VEK +          +               +
Sbjct: 672 -----------KATISLINYCADKAQLVVEKQMDFLNHKQVFKV--------------AN 706

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
            L+    EI K   +    IY  + E   ++S
Sbjct: 707 KLRAYYGEIYKEAKASLYEIYSTA-EPILITS 737


>gi|330813924|ref|YP_004358163.1| ribonuclease D [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487019|gb|AEA81424.1| ribonuclease D [Candidatus Pelagibacter sp. IMCC9063]
          Length = 352

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 67/209 (32%), Gaps = 27/209 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I + +D++++ +              D  + ++S+   I++      D T F +     
Sbjct: 2   IIQSNQDLEKFCKLASRKKVLFIDTEFDRRNTYYSELSFISVY-----DGTKFWLIDCLT 56

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
           D+ V                   L K   N+   K+ H  + D  +     + +    D 
Sbjct: 57  DIKV-----------------EALSKVLNNKKITKVLHGSQQDLEIFKHLQLPLNSLFDT 99

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
              +             S A   L   +  + K  ++S  + +  + +  E+   +   +
Sbjct: 100 QTAAQ----FCGFEQPISYANAVLKICKVSLDKQLQNSDWLKRPVNKKTIEYLKNDVKYL 155

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMID 578
             L+     +L   K    Y + +  +ID
Sbjct: 156 KPLYAFFSKELKKNKNFS-YFKEEMSIID 183


>gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
 gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
          Length = 465

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 27/162 (16%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIA--------------ISTLDQKDDTSFKVETIF 428
           +L  +    F   T  +D    + + +                 TL     T     T  
Sbjct: 267 RLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAV 326

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR------YGIS 482
             +S     D+ G +   +    +       EH + + HN  +D   L R      Y   
Sbjct: 327 HQISDAMVADAPGFDVACRAFHQF------AEHAVIVAHNAPFDMAFLRRQCRDQDYAFD 380

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
                D + +S V+  G + H + ++  +   +   ++  + 
Sbjct: 381 -NPILDTVHLSAVVFGGSAEHTLDALCDRLNVHIPDDVRHTG 421


>gi|62088204|dbj|BAD92549.1| DNA-repair protein complementing XP-G cells variant [Homo sapiens]
          Length = 1611

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 1198 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 1252

Query: 159  KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
            K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 1253 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 1310

Query: 214  LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
            LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 1311 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 1370

Query: 260  EHLILEDCNGPRLISFLKALE 280
               +    +  ++  F +   
Sbjct: 1371 GSFLWGKPDLDKIREFCQRYF 1391


>gi|324715041|ref|NP_001191354.1| BIVM-ERCC5 protein [Homo sapiens]
          Length = 1640

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 1227 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 1281

Query: 159  KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
            K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 1282 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 1339

Query: 214  LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
            LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 1340 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 1399

Query: 260  EHLILEDCNGPRLISFLKALE 280
               +    +  ++  F +   
Sbjct: 1400 GSFLWGKPDLDKIREFCQRYF 1420


>gi|298736635|ref|YP_003729161.1| hypothetical protein HPB8_1140 [Helicobacter pylori B8]
 gi|298355825|emb|CBI66697.1| hypothetical protein HPB8_1140 [Helicobacter pylori B8]
          Length = 177

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 15/138 (10%)

Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
           +EADDII+ Y     K+     I S DKD+  L S     ++       ++      +  
Sbjct: 20  YEADDIISFYKK---KDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF-- 72

Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI- 233
                   Q + GD  DNI G+ GIG       L E      +      I+  K +E++ 
Sbjct: 73  ----FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDLS 126

Query: 234 -LEYAETARLSRKLVMLR 250
             E  E A L+ +LV + 
Sbjct: 127 DSEAKEKALLNMRLVNMH 144


>gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 729

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHS-KPIAIAISTLDQK----DDTSFKVETIFIDLS------ 432
           L  +    F   T  +      + I I  + +  +     +   ++      LS      
Sbjct: 534 LTELSYTVFDTETTGLQPSQGDEIIQIGATRIVNRRLLRHECFDQLIDPRRPLSQQSIEV 593

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM-RGFE 487
              +++          +L   + F  +   + +GHN  +D   L     + G+   +   
Sbjct: 594 HGITRELLVGQPTIDTVLPQFQTFCAD--TVLVGHNAAFDMRFLQLKEKQTGVRFDQPVL 651

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK 511
           D +L+S VL   ++SH + +IA++
Sbjct: 652 DTLLLSAVLHPNQNSHRLEAIAER 675


>gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 176

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 30/200 (15%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
            + +   +     +++    LE     +  +                          SFK
Sbjct: 3   EDHALQVVETVDALEELAAHLEECKEFAVDLE--------------------HHSYRSFK 42

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
             T  + +S            L   +   L K F +   LK+ H    D   L + +G+ 
Sbjct: 43  GFTCLMQISTRERDFVVDVLALRSHVRDALGKAFADADKLKVMHGADNDVQWLQKDFGMF 102

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQE 540
           +    D    + VL+       + S    +L +    I  +++  +   ++     ++ E
Sbjct: 103 VSCLFDTGQAARVLE-------LPSKGLAYLLHHYCGIKANKRFQLADWRLRPLTKEMVE 155

Query: 541 HAIENSNVILQLWLLLRPKL 560
           +A  +++ +L +   L+  L
Sbjct: 156 YARGDTHHLLYVHDRLKEAL 175


>gi|119505873|ref|ZP_01627938.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
 gi|119458301|gb|EAW39411.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
          Length = 380

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 63/203 (31%), Gaps = 28/203 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +T  + + V  +      +        D F+ +   I ++   Q              
Sbjct: 12  VRDTTALNEMVALISQEAFVAVDTEFRRRDTFYPEVALIQLAAAGQ-------------- 57

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                       + LT +    L+K F     +KI H+   D  V  R  G+  R   D 
Sbjct: 58  --------CWLLDPLTLDDTQPLQKLFRQTDLIKILHSASEDLEVFERWLGVLPRPMIDT 109

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
              + +L  G        +    LS    ++ K    S  + +        +A+++   +
Sbjct: 110 QKAAAMLGLGFGL-SYRDLVHDLLSI---DVAKDETQSDWLVRPLTDAQCHYAMQDVTFL 165

Query: 550 LQLWLLLRPKLIVEK-LLHVYER 571
            Q W +L  +      L  + E 
Sbjct: 166 AQCWPILEARAEASGYLSWILEE 188


>gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma
           citri]
          Length = 1453

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 81/217 (37%), Gaps = 25/217 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID----------LSV 433
           L T     F + T  + + + + I      +D        +  +F            L+ 
Sbjct: 405 LRTAKYVIFDLETTGLSSGYDEIIEFGAVIMDGISGERQIINHLFKPSVKLSSFTTELTG 464

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGI-SMRG-FE 487
            T +    K T  + I   L ++F++   + I HN ++D    +  L + G   +     
Sbjct: 465 ITDELLADKPTFIESIDQIL-EYFKDA--ILIAHNAEFDLGFIQSWLKKAGRSEINNTVI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D + +S +L+    ++ + +IA+ +     +E+          D I  + + EH +    
Sbjct: 522 DTLQLSRILEPHLKNYRLGTIARCYSVIYNEEVAHRG----DYDAIVLTDIYEHQLRK-- 575

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           +I    +     +       VY++L    + ++++ +
Sbjct: 576 MINNYGIEFDNDIENIHDPAVYKKLRPKHMAILAKNQ 612


>gi|311253092|ref|XP_003125389.1| PREDICTED: flap endonuclease GEN homolog 1-like [Sus scrofa]
          Length = 906

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 25/149 (16%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
              T+ +      K  R     +L           +  GIP ++  G EA+ + A     
Sbjct: 97  SGKTWSH------KTGRSHFKSVLKE----CLDMLECLGIPWVQAAG-EAEAMCAYLNAN 145

Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVC 181
              +G     ++ D D   L    T   +     K        +  +    G+  + +V 
Sbjct: 146 GCVDG----CLTNDGDAF-LYGAQTVYRNFTMNTKDPHVDCYTMSSIKNILGLDRDSLVG 200

Query: 182 LQALTGDSIDNIP-GIPGIGYKTAALLLQ 209
           L  L G   D +P G+PG+G + A  L++
Sbjct: 201 LAILLG--CDYLPKGVPGVGKEQALKLIK 227


>gi|254786713|ref|YP_003074142.1| ribonuclease D [Teredinibacter turnerae T7901]
 gi|237686111|gb|ACR13375.1| ribonuclease D [Teredinibacter turnerae T7901]
          Length = 393

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRS 501
           + L  +  + L +  EN   LK+ H+   D  V HR+ GI  +   D  + S  L     
Sbjct: 63  DPLAFDDFTPLAELMENPGVLKVLHSCSEDLEVFHRFLGIVPKHMLDTQIAS-ALCGYGF 121

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           S     +    L    +E+ K    S  + +   S   ++A  +   + +L  +L  KL 
Sbjct: 122 SVGFGKLVHAVLG---EELPKEETRSDWLHRPLSSAQIDYAAIDVEYLYKLASILVLKLK 178

Query: 562 -VEKLLHVYERLD 573
            + +L  V E  +
Sbjct: 179 NLGRLTWVAEDCE 191


>gi|320588480|gb|EFX00949.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
          Length = 1631

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 118/373 (31%), Gaps = 35/373 (9%)

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPIT----IPLEHLILEDCNG 269
           L++      R+  K  + +       A L  +L     DV +     + +   +LE  + 
Sbjct: 47  LDDNAERLLRLTNKLLKASAASTGRKAPL--EL-EDADDVDLNWQGVVDVIDALLEKADT 103

Query: 270 PRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKT 328
                 L             TT    ++   +P    ++ +  +    + +   +     
Sbjct: 104 S-----LDEYTGMLKRKDAPTTEVGPESKKPKPTTERLDWSIRRANIAKPQELFEHKPDN 158

Query: 329 SQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK-------DIQQWV 381
                     +       P    L      +        Y   +             + +
Sbjct: 159 FDKGPWKPLLTTKPHATVPLAESLTTFVDENGSVQYKHPYETEITKMRYPEAVYHKSEPI 218

Query: 382 QKLETIGSASFKIIT-DTMDAFHSKP-IAIAIST-LDQKDDTSFKVETIFIDLSVHTSQD 438
               T G+ +  + T + + A   +   A  I+  L+  D  ++      + +S      
Sbjct: 219 LYQPTEGTKAIWVDTFEGVQAMLEELRQADVIAVDLEHHDFRTYTGLLSLMQISTREKDW 278

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD 497
                T  +  L  L + F +   +K+ H    D + L R  G+ + G  D       L+
Sbjct: 279 VVDTLTPWRHRLEILNEVFADPTKIKVFHGATSDIVWLQRDLGLYIVGLFDTYFACDCLE 338

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLL 555
                +   S+A  +L     +    +K  +   +I     ++  +A  +++ +L ++ +
Sbjct: 339 -----YPARSLA--YLLKKFVDFDADKKYQMADWRIRPLPEEMLYYARSDTHFLLYVYDM 391

Query: 556 LRPKLIV--EKLL 566
           +R +L    EKLL
Sbjct: 392 VRNELAEKSEKLL 404


>gi|108760811|ref|YP_634116.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
 gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
          Length = 389

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 23/131 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           LE     +  +  D+M AF ++   + ++T DQ                           
Sbjct: 24  LEAAREIAVDLEADSMHAFRARLCFLQLATDDQV---------------------FLLDT 62

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSH 503
                +   L     +    K  H  + D   L   G+ ++G  D    + +L  G    
Sbjct: 63  LQPGVVPGMLAPLMADPARTKFFHAAQGDLQFLAEVGVRVQGLFDTHRAATLL--GWPKV 120

Query: 504 DIASIAQKWLS 514
            +A +A++ L 
Sbjct: 121 GLADLARERLG 131


>gi|50286743|ref|XP_445801.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525107|emb|CAG58720.1| unnamed protein product [Candida glabrata]
          Length = 737

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 75/214 (35%), Gaps = 27/214 (12%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
              LE+ + +      + +   + N   +Q  +Q+L+     +  +              
Sbjct: 194 NDILEKKEPIPSTSWVDTNAIWVDNINSLQDMMQELKKSSEIAVDLE------------- 240

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
                    D  S+      + +S  T QD        ++ L  L + F N    K+ H 
Sbjct: 241 -------HHDFRSYYGLVCLMQISTRT-QDYIVDTIALRDDLKMLNEVFTNPLITKVFHG 292

Query: 469 IKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
              D + L R  G+ +    D    S  L  G   H +A + +K+ ++      K  + +
Sbjct: 293 AFMDIIWLQRDLGLYIVSLFDTFHASKAL--GLPKHSLAYLLEKYANFKTS---KKYQLA 347

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
               +     +  +A  +++ +L ++  +R  LI
Sbjct: 348 DWRRRPLSKAMMAYARADTHFLLNIFDQMRNGLI 381


>gi|218884379|ref|YP_002428761.1| flap endonuclease-1 [Desulfurococcus kamchatkensis 1221n]
 gi|322812496|pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
           Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
 gi|218765995|gb|ACL11394.1| Flap structure-specific endonuclease [Desulfurococcus kamchatkensis
           1221n]
          Length = 363

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 87/261 (33%), Gaps = 66/261 (25%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKE 55
             + ++DG + +Y+   A     R+ DG P         + ++G F   +  +    +  
Sbjct: 35  GKIIVIDGYNALYQFLAAI----RQPDGTPLMDNNGRITSHLSGLFYRTINIVEAGIKPV 90

Query: 56  SIASHFAVIFDYP-----------AVTFRNEIYPDYKANRPKIPEMLLPQLPLV------ 98
                   +FD                 + E    Y+         L  +  ++      
Sbjct: 91  Y-------VFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTE 143

Query: 99  ------RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152
                 +    A GIP ++    E +   A         G A    S D D +   SP  
Sbjct: 144 EMVRDAKSLLDAMGIPWVQAPA-EGEAQAAYIVKK----GDAYASASQDYDSLLFGSPKL 198

Query: 153 CLYDT---------------VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GI 196
               T               VK E I+++ ++ + GI  E ++ +  L G   D  P G 
Sbjct: 199 VRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLG--TDYNPDGF 256

Query: 197 PGIGYKTAALLLQEYGNLENI 217
            GIG K A  L++ YG +E I
Sbjct: 257 EGIGPKKALQLVKAYGGIEKI 277


>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 515

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 9/179 (5%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQK----LETIGSASFKIITDTMD-A 401
           PQ   L+   +      +  +  + VN K ++  V +    ++          ++  D A
Sbjct: 176 PQVQKLDSQSEDMHPLEDVLTKMEYVNEKMLEAPVPQEPRPVDETPLTVISTASELKDMA 235

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
              +        L+  +  SF+     + +S  +         L   +   LK  F + +
Sbjct: 236 MKCRLAGEIAVDLENHNYRSFQGFVCLMQVSTRSEDFIVDALALRSHMGPSLKDLFADAN 295

Query: 462 FLKIGHNIKYDKLVLHR-YGISMRGFEDI-MLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
             K+ H    D   L R +GI +    D     + VL        +A + Q++L     
Sbjct: 296 VKKVMHGADRDIEWLQRDFGIYVCNMFDTGQQAARVLQ--LEGFGLAFLMQRFLKINPD 352


>gi|159040632|ref|YP_001539884.1| flap endonuclease-1 [Caldivirga maquilingensis IC-167]
 gi|189044441|sp|A8M9L3|FEN_CALMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|157919467|gb|ABW00894.1| XPG I [Caldivirga maquilingensis IC-167]
          Length = 350

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 24/137 (17%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +    + G+P ++       +  A   Y+A K G      S D D     +P      T+
Sbjct: 140 KRLLDSMGVPWVQAP----SEGEAQAAYMASK-GIVWAAGSQDYDSFLFGAPRLVRNLTI 194

Query: 159 KEEKIDI---------EHVIKKWGI-------PPEKMVCLQALTGDSIDNIP-GIPGIGY 201
              +              +I+   +          +++ L  L G   D  P GIPGIG 
Sbjct: 195 SGRRKLPGRDEYVEVTPELIELNDVLKALRLRDRGQLIDLAILLG--TDYNPEGIPGIGP 252

Query: 202 KTAALLLQEYGNLENIL 218
           + A  L+QEYG+L+ ++
Sbjct: 253 QRALRLIQEYGSLDKLM 269


>gi|169794444|ref|YP_001712237.1| putative 3'-5' exonuclease [Acinetobacter baumannii AYE]
 gi|215482033|ref|YP_002324215.1| 3'-5' exonuclease family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345646|ref|ZP_07226387.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB056]
 gi|301512345|ref|ZP_07237582.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB058]
 gi|301596170|ref|ZP_07241178.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB059]
 gi|332851917|ref|ZP_08433803.1| 3'-5' exonuclease [Acinetobacter baumannii 6013150]
 gi|332868835|ref|ZP_08438428.1| 3'-5' exonuclease [Acinetobacter baumannii 6013113]
 gi|332874252|ref|ZP_08442172.1| 3'-5' exonuclease [Acinetobacter baumannii 6014059]
 gi|169147371|emb|CAM85232.1| conserved hypothetical protein; putative 3'-5' exonuclease
           [Acinetobacter baumannii AYE]
 gi|213988888|gb|ACJ59187.1| 3'-5' exonuclease family protein [Acinetobacter baumannii
           AB307-0294]
 gi|323519683|gb|ADX94064.1| putative 3'-5' exonuclease [Acinetobacter baumannii TCDC-AB0715]
 gi|332729610|gb|EGJ60947.1| 3'-5' exonuclease [Acinetobacter baumannii 6013150]
 gi|332733088|gb|EGJ64287.1| 3'-5' exonuclease [Acinetobacter baumannii 6013113]
 gi|332737536|gb|EGJ68443.1| 3'-5' exonuclease [Acinetobacter baumannii 6014059]
          Length = 213

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           SE +         Q      +N+ +   I N +  +   ++L+      F     +   F
Sbjct: 2   SEASALLDKTSIQQLPPFENLNHQNIVVIENGEQCKTIEEELKAATFLGFDSE--SKPTF 59

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               +    ST       + + +     +++ T              L +L+    N   
Sbjct: 60  QVGEV----STGPHLIQLATEHKAYLFHVNLST--------------LKFLQPILSNPKQ 101

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFED 488
           +K+G  +K DK + H+ GI +    D
Sbjct: 102 IKVGFGLKNDKHIFHKKGIELESCVD 127


>gi|119719220|ref|YP_919715.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
 gi|166973708|sp|A1RWY2|FEN_THEPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|119524340|gb|ABL77712.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
          Length = 346

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 30/200 (15%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEK-----EGFAVTIISTDKDLMQLVS---- 149
           +L  +  G+P +E    E +   A      +      + F   +  + + +  L      
Sbjct: 138 KLLLRYMGVPYVEAPS-EGEAQAAYMVKKGDAWASGSQDFDSLLFGSPRLVRNLAITGKR 196

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P   +Y  VK E +++E +++  GI  +++V +  L G   D  P G  GIG K A  
Sbjct: 197 KLPRKDVYVEVKPEIVELEELLRVHGITHQQLVVIGILVG--TDYAPEGARGIGVKKALK 254

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L++E  + E I  +          E ILE      L  ++               L  ++
Sbjct: 255 LVKELKDPEKIFRSV-EWSSDVPPEKILE----LFLHPEVTDSY----------ELTWKE 299

Query: 267 CNGPRLISFLKALEFTKLIN 286
            +  ++I  L       +  
Sbjct: 300 PDKEKVIELLVERHQFSMER 319


>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
 gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type
           [Lactobacillus plantarum WCFS1]
 gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 1437

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 55/280 (19%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ------ 437
           L+      F   T  + A + +   I +S +             FID   H S+      
Sbjct: 417 LKESTYVIFDTETTGLSAIYDRV--IELSAVKMVKGNVVDQFEEFIDPGFHLSETTTNLT 474

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL------HRYGISMRGFE 487
               D    +   +E+    ++F+ +   + +GHN+ +D   +      H  G       
Sbjct: 475 SITDDMVRGSKSEEEVFKLFREFYGDA--IVVGHNVTFDIGFMNTGYARHHMGPITNPII 532

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK-------------------WLSYTRKEILKSRKSSI 528
           D + ++  L      + + ++A+K                    L++   +  + R    
Sbjct: 533 DTLTLARWLYPNLRGYRLNTLAKKFNVNLEHHHRAIYDAETTGHLNHLFLKDAEDRYQVQ 592

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV--------- 579
             D+++D   +  A  ++         L  +     L +++  +    ++          
Sbjct: 593 FHDQLNDHMNENAAYRHARP---FHATLYAQTQA-GLKNLFRIISLSNVEYYYRVPRVPR 648

Query: 580 -VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
            V      GI +            +  +   +E     +G
Sbjct: 649 SVLNKYRDGILVGSAC--SSGEVFTAMMQKGKEEARQKAG 686


>gi|307176270|gb|EFN65901.1| DNA-repair protein complementing XP-G cells [Camponotus floridanus]
          Length = 1193

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 59/203 (29%), Gaps = 23/203 (11%)

Query: 81   KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
            K  R         Q    +   + FGIP I     EA+   A    I    G     I+ 
Sbjct: 810  KFERQATNISDQIQTE-AQELLRLFGIPYIVAP-MEAEAQCAYLEQIELTNGT----ITD 863

Query: 141  DKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
            D D+                 +        +   + +   +++ L  L G   D   G+ 
Sbjct: 864  DSDIWLFGGQYVYKNFFNNNRRVLQFHAYDIQHHFKLSRNQLIQLALLVG--SDYTTGVA 921

Query: 198  GIGYKTAALLLQEY---GN--LENILINASRIKQKKRREN--ILEYAETARLSRK----- 245
            GIG  TA  +L  +   G+  L  +    S IK+ K      +       +L R      
Sbjct: 922  GIGPVTALEILAAFPAEGDNILHGLYKFCSWIKEGKPSGKMGLRNKLRNVKLDRDFPNQA 981

Query: 246  LVMLRTDVPITIPLEHLILEDCN 268
            +        I    E       N
Sbjct: 982  VAQAYLFPTIDESKETFTWGKPN 1004


>gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 707

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS--- 439
           L  +    F   T  ++     + I I  + +  +     +     ID      +DS   
Sbjct: 512 LSELSYTVFDTETTGLEPAAGDEIIQIGATRIVNRRLLQHEGFEQLIDPRRPLPEDSVKI 571

Query: 440 -------TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM-RGFE 487
                           +L   + +  +   + + HN  +D   L       G+   +   
Sbjct: 572 HGITPEMLAGQPPLDTVLPAFRAYCAD--TVLVAHNAAFDMRFLQLKEASTGVRFDQPVL 629

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK 511
           D +L+S VL   + SH + +IA++
Sbjct: 630 DTLLLSAVLHPNQESHRLEAIAER 653


>gi|302674926|ref|XP_003027147.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
 gi|300100833|gb|EFI92244.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
          Length = 1139

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 17/155 (10%)

Query: 73  RNEIYPDYKANRP------KIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
           R+EI  +  + R       +  E +  Q+   + +  + FGIP +     EA+   AT  
Sbjct: 734 RSEIDDEITSLRQQRTAAMRAAEDVTQQMVAQIMIMLRLFGIPYMTAP-MEAEAQCATLV 792

Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKMVCL 182
            +   +G    +I+ D D+    +         + + ++      + ++ G+    ++ L
Sbjct: 793 SLNLVDG----VITDDSDVFLFGAARVFKNMFNQSKTVECFLAADLQRELGLDRGVLIRL 848

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
             L G   D   G+PG+G   A  LL+E+   + +
Sbjct: 849 AYLLG--SDYTEGLPGVGPVMAMELLREFPGEDGL 881


>gi|302803751|ref|XP_002983628.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
 gi|300148465|gb|EFJ15124.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
          Length = 201

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            + +  I   + ++   + L      +      ++ +F      I IST           
Sbjct: 29  EEPFVWIETKEALEDLAEVLSEESEFAVDTEQHSIRSFLGFTALIQIST----------- 77

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM 483
                       +D         + +  L+  F N    K+ H    D L L R + I +
Sbjct: 78  ----------YKRDYLIDAIALHDEMEILRPVFANAAICKVFHGADSDILWLQRDFHIYV 127

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
               D      VL   +      S+A    +Y      K+ + S    +     +  +A 
Sbjct: 128 VNLFDTARACDVLGKPQR-----SLAYLLQTYCNISTNKAFQKSDWRQRPLPEDILLYAR 182

Query: 544 ENSNVILQLWLLLRPKLIV 562
            +++ +L +   L  +L+ 
Sbjct: 183 TDAHFLLYIARKLYSELLQ 201


>gi|294459945|ref|NP_001170894.1| DNA repair protein complementing XP-G cells [Taeniopygia guttata]
          Length = 1176

 Score = 48.9 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 67/204 (32%), Gaps = 26/204 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP IE    EA+   A      +  G     I+ D D+              
Sbjct: 779 QELLRLFGIPYIEAP-TEAEAQCALLDLTDQTSGT----ITDDSDVWLFGGRHVYKNFFS 833

Query: 159 KEEKIDIE---HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           + + I+         + G+   K++ L  L G   D   GIP +G+ TA  +L E+    
Sbjct: 834 QNKYIEYYQYVDFQNELGLDRSKLINLAYLLG--SDYTEGIPNVGFVTAMEILNEFPGHG 891

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  A    + ++ + ++      ++ +KL                      +    
Sbjct: 892 LEPLLKFAEWWNEAQKNKKVMPNPHDTKVKKKLRELQLYSGFPNPAVAEAYLKPVVDESR 951

Query: 260 EHLILEDCNGPRLISFLKALEFTK 283
                   +  ++  F K      
Sbjct: 952 GSFTWGKPDVEQIREFCKDHFGWT 975


>gi|67937671|gb|AAY83298.1| unknown [Babesia sp. WA1]
          Length = 954

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           FR+++   YK  R       L  L  +      FGIP +                    +
Sbjct: 627 FRSQL---YKMQRYSQS---LESLEKICEMLDLFGIPYMHAPSEAEAQCC------FLNQ 674

Query: 132 GFAVT-IISTDKDLMQLVSPTT--CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
              V  +IS D D +   +       +++   E      +  + G+  E++  L  + G 
Sbjct: 675 SGEVYAVISDDSDTLPFGARRILKNFFNSRVFEIYLSSRIKSELGLSQEQLALLAIICG- 733

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
             D   G+ GIG   A  +++ Y    ++  
Sbjct: 734 -CDYTDGVCGIGIVNALEVIKAYPTFNDLYA 763


>gi|269960729|ref|ZP_06175101.1| ribonuclease D [Vibrio harveyi 1DA3]
 gi|269834806|gb|EEZ88893.1| ribonuclease D [Vibrio harveyi 1DA3]
          Length = 372

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 28/253 (11%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I   KD+++                   +  ++ +   I +    Q          
Sbjct: 2   NYQIITKNKDLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQ---------- 51

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
               LS+    + T         ++   +  ++   LK+ H    D  V    +G +   
Sbjct: 52  ----LSLIDPTELTD--------MTSFVELLKDTSVLKVLHACGEDLEVFQNAFGCTPFP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  LM+  L     S   A++ +++L     E+ KS   +  + +    +  ++A  +
Sbjct: 100 MVDTQLMAAFL-GHGLSTGFATLVEEYLGV---ELDKSESRTDWMARPLTQKQLDYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            + ++ L+  L  K+        V +  D  +   +  +    + +D     Q+      
Sbjct: 156 VHYLMPLYEKLLDKVNEAGWWEAVQQESDLLVSKRIRNLNEETVYLDIKGAWQLRPAELA 215

Query: 605 NLLSLEENIYDLS 617
            L  L    Y  +
Sbjct: 216 ILKPLATWRYREA 228


>gi|225022753|ref|ZP_03711945.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944474|gb|EEG25683.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 232

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 17/152 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET-IFIDLS--- 432
           +    Q    +   SF + T + + F ++ +  A+  +D       ++     + +    
Sbjct: 3   MDSLTQPFNPLKVLSFDLETTSANPFEARIVTSALVHIDSGGAHPQELLADPGVPIPEAA 62

Query: 433 --------VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--GIS 482
                    +  +       +  E ++ +KK + + + L I +N  YD  VLH    G  
Sbjct: 63  TKVHGITTEYAREHGRPHADVLAETIATIKKAWADGYTL-IVYNASYDLTVLHSLEPGFL 121

Query: 483 MRG-FEDIMLMSYVLDSGRSSH-DIASIAQKW 512
           + G   D  +M  +LD  R     + ++ +++
Sbjct: 122 ITGPVYDPYVMDKLLDPYRRGKRTLTALCEEY 153


>gi|312882473|ref|ZP_07742214.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369873|gb|EFP97384.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 346

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T    L +    D    + +  +++  +  F    ++   LK+ H    D  
Sbjct: 3   DTEFVRTRTYHPQLGLIQLYDGQNLSLIDPKVIDDMSPFIDLLKDPSVLKVLHACGEDLE 62

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V H  +G       D  LM+  L     S   A++ +++L     E+ KS   +  + + 
Sbjct: 63  VFHNSFGCLPHPMVDTQLMAAFL-GHGLSTGFAALVEQYLEV---ELDKSESRTDWLARP 118

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
              +  ++A  +   +  L+ LL  K+         ++      ++++   I  I+ D  
Sbjct: 119 LTQKQLDYAAADVFYLKPLFSLLLEKIEQVGWWKAAQQ----ESELLAVKRIKTIEPDLA 174

Query: 594 LLK 596
            L 
Sbjct: 175 YLD 177


>gi|297694381|ref|XP_002824460.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing XP-G
            cells-like [Pongo abelii]
          Length = 1899

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 1486 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 1540

Query: 159  KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
            K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 1541 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 1598

Query: 214  LENILI-----NASRIKQK--------KRRENILE-YAETARLSRKLVMLRTDVPITIPL 259
            LE +L      + ++   K        K ++ +          +  +        +    
Sbjct: 1599 LEPLLKFSEWWHEAQKNPKIRPNPYDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 1658

Query: 260  EHLILEDCNGPRLISFLKALE 280
               +    +  ++  F +   
Sbjct: 1659 GSFLWGKPDLDKIREFCQRYF 1679


>gi|242048348|ref|XP_002461920.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor]
 gi|241925297|gb|EER98441.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor]
          Length = 505

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 38/233 (16%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-----HRYGIS-----MRGFEDIMLMS 493
               ++ + L++ FE    LK+G   K D + L        G       +  F D+  + 
Sbjct: 109 VPLADLWAPLRELFERPDALKLGFRFKQDLVYLSATFSAALGCDSGFDRVEPFLDVTNIY 168

Query: 494 YVLDSG-------RSSHDIASIAQKWLSYTR-KEILKSRKSSIPIDKISDSQVQEHAIEN 545
           Y L          + +  +A+I ++ LS    KE+  S  S  P+ +       ++A  +
Sbjct: 169 YYLKGHDRQKKLPKETKSLATICEELLSVFLSKELQCSDWSCRPLSEGQI----QYAASD 224

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER--LDKPMIDVVSQMEITGIQIDQ-DLLKQVSAEI 602
           +  +L ++ L + K+ +E          LD+    VV +   +G  I     L  +  + 
Sbjct: 225 AYYLLGIFDLFQKKITMEGQCSSTTELTLDRHFSPVVIECSSSGYDICSGSCLMSIVTKY 284

Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655
           S+ ++  E +    +  +               KLK P+ AK K     ++  
Sbjct: 285 SEKIILTESDAKQRTSRR-------------KEKLKIPANAKCKDKVDCSSEW 324


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 121/374 (32%), Gaps = 58/374 (15%)

Query: 159 KEEKIDIEH--VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN--- 213
           KEE I      + ++  I  E  +  + +          I  I   T++ +++++ +   
Sbjct: 225 KEELITPMGNILEEERRITIEGYIFDKEVRELRSKRKILILKITDYTSSFIVKKFSSGEK 284

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
            E I       K  K R +I E        R LVM   D+      + +     +  R+ 
Sbjct: 285 DEQIFDAIQTGKWLKVRGSIQEDTFM----RDLVMNAQDLVEVTHAQRVDRAPEDQKRV- 339

Query: 274 SFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
                L     ++++  T       +   V       +K IAI       +     Q + 
Sbjct: 340 ----ELHVHSNMSQMDAT-----NKVGDFVAQAAKWGHKAIAITDHGGAQSFPDAHQAAK 390

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
            +        E       ++        P+ + +Y                       F 
Sbjct: 391 KAGIKMIYGVEANIVDDGVQVAYNPKPTPLADATY---------------------VVFD 429

Query: 394 IITDTMDAFHSKPIAIAI---------STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
           + T  + A +   I +A          ++ D+  D    +    I+L+  T +   G  +
Sbjct: 430 VETTGLSAVYDTIIELAAVKMHKGNVEASFDEFIDPGHPLSNTTINLTGITDEMVRGSKS 489

Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDIMLMSYVLDS 498
             +E+L   ++F  +E  + + HN  +D   L     +YGI        D + ++  L  
Sbjct: 490 -EEEVLRLFREF--SEGAVLVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYP 546

Query: 499 GRSSHDIASIAQKW 512
                 +  +++K+
Sbjct: 547 EFKRFGLGVLSKKF 560


>gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica]
          Length = 354

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 36/199 (18%)

Query: 378 QQWVQKLETIG------SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDL 431
           ++ V  LE  G        +     D++  +      I  S                   
Sbjct: 6   ERLVHHLEQAGRGSDSPVCAIDTEADSLHRYRESLCLIQFSAKG---------------- 49

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIM 490
                 +S   + L  E LS L  +          H   YD  +  R +G   +   D  
Sbjct: 50  ------ESVLIDPLVIEDLSPLGSYLSEATV--WMHGADYDMTMFKRQFGDLPKVVYDTQ 101

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           + + +L  G     +  +   +      E+ KS + +    +    ++ E+A+ + + +L
Sbjct: 102 IGARLL--GARRFGLGDLVSLYFGV---ELSKSSQKADWGKRPLSPKMIEYALNDVHYLL 156

Query: 551 QLWLLLRPKLIVEKLLHVY 569
           ++  L+  KL        +
Sbjct: 157 EMGDLIVTKLKDLGRYEWF 175


>gi|195455204|ref|XP_002074609.1| GK23167 [Drosophila willistoni]
 gi|194170694|gb|EDW85595.1| GK23167 [Drosophila willistoni]
          Length = 1008

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 29/228 (12%)

Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355
           A N+E   L +   ++   A      + + +     +S     ++ N+ Q+P   +    
Sbjct: 460 AENLEKDKLSLANQQSANSAASPGSPQSSPLHNILANSNPSNANQTNANQSPSHSYFVGD 519

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
               +   N    T I N K                   +TD +  + +K  +I IS   
Sbjct: 520 TWKIKVLQNT---TVIANVKQS---------------VFVTDILLKYAAKNESIVISLDC 561

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY--LKKFFENEHFLKIGHNIKYD- 472
           +  +   K E   I++     +           ++S   LK   E+E  +K+ H+ + D 
Sbjct: 562 EGINLGLKGEITLIEIGTGRGEAFLFDVQSCPAMVSDGGLKTLLEHEQVIKVIHDCRNDA 621

Query: 473 KLVLHRYGISMRGFEDIMLMSYVL---DSGRSSH-----DIASIAQKW 512
             +  ++GI +R   D      +L   ++G+  +      + S+ +++
Sbjct: 622 ANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLCEQY 669


>gi|113460879|ref|YP_718946.1| ribonuclease D [Haemophilus somnus 129PT]
 gi|112822922|gb|ABI25011.1| ribonuclease D [Haemophilus somnus 129PT]
          Length = 381

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 38/222 (17%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           N+  +  I     + +  Q+ +     +         +F+ K   I +   +Q       
Sbjct: 10  NSPQFQLITTNDRLYEICQQAQQKTVIALDTEFVRTKSFYPKLGLIQLYDGEQVSLIDPF 69

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
             + F                          +   N+   K+ H    D  V   Y   +
Sbjct: 70  ELSDFSP----------------------FIQLLANQKVTKVLHACSEDLEVFQHYFQQL 107

Query: 484 R-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D  +M+  L    +S  +A + + +      EI K    +  + +        +A
Sbjct: 108 PTPMLDTQIMAAFLQ-HGNSIGLAILLKHYFKL---EIDKGISRTNWLARPLSDVQLHYA 163

Query: 543 IENSNVILQLWLLLRPKLIV-----------EKLLHVYERLD 573
             +   +L L+  ++ KL             E LL+ Y ++ 
Sbjct: 164 AADVWYLLPLYQRMQQKLAQTSWQSAVQNDCENLLNKYTQIK 205


>gi|51246649|ref|YP_066533.1| ribonuclease D [Desulfotalea psychrophila LSv54]
 gi|50877686|emb|CAG37526.1| related to ribonuclease D [Desulfotalea psychrophila LSv54]
          Length = 374

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 73/203 (35%), Gaps = 26/203 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T+D+++ V K   + +            ++ +   I I+  D++            
Sbjct: 6   IISTTEDLKKIVNKALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEE-------CYAID 58

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFED 488
            LS+                LS L +   + + +KI H+   D +++ +  G + +   D
Sbjct: 59  PLSIKD--------------LSPLGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFD 104

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +    S  +   +  +  + L     E+ KS   +  + +    +   +++ +   
Sbjct: 105 TRLAAGFAGSISTI-SLLQLVSEQL---ETELDKSETRTNWLKRPLTEKQLSYSLNDVRY 160

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           +    ++L  K+I  K+    + 
Sbjct: 161 LRATRVILLSKIIGPKIKSWLQE 183


>gi|67589751|ref|XP_665434.1| RAD2 [Cryptosporidium hominis TU502]
 gi|54656123|gb|EAL35205.1| RAD2 [Cryptosporidium hominis]
          Length = 1158

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM----QLVSPTTC 153
            + L  +A GIP I+  G EA+   +  T +    G    ++S D D +    + +     
Sbjct: 894  ICLLLKALGIPWIDSPG-EAEAQASILTQLNICHG----VLSDDSDCLIFGAKKIFRNFF 948

Query: 154  LYDTVKEEKIDIEHVIKKWGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
              ++V  E  D+  V K  GI   E+   L  L G   D   G+ GIG   A  +L+ Y 
Sbjct: 949  SGNSV--EMYDLNQVKKYLGIEKQEQFYILAILLG--CDYTVGVNGIGPVNAVEVLKAYP 1004

Query: 213  NLENIL 218
             LE+++
Sbjct: 1005 ELEDMI 1010


>gi|325972527|ref|YP_004248718.1| 3'-5' exonuclease [Spirochaeta sp. Buddy]
 gi|324027765|gb|ADY14524.1| 3'-5' exonuclease [Spirochaeta sp. Buddy]
          Length = 294

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             LK F E+   LK+  +   D  LV  +Y I + G  DI + +  L       ++  + 
Sbjct: 67  EALKAFLEDASLLKVMFDCASDSALVRKQYDILLDGVYDIRIAALALG---YIGNLTGLV 123

Query: 510 QKWLSYTRKE-ILKSRKSSIP---IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           ++++    K  +   +K+ +    I  +   Q+ E+A+ +   +L L  +L  ++  + L
Sbjct: 124 ERYIPEAEKPNLSSKKKNQMTNWLIRPLKSDQI-EYALSDVEHLLVLKDILDGEVEKKGL 182

Query: 566 LH 567
             
Sbjct: 183 TE 184


>gi|255714619|ref|XP_002553591.1| KLTH0E02398p [Lachancea thermotolerans]
 gi|238934973|emb|CAR23154.1| KLTH0E02398p [Lachancea thermotolerans]
          Length = 665

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 95/261 (36%), Gaps = 45/261 (17%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67
             +DG ++++RA ++         G P +    F   + +L     + +I  +   +FD 
Sbjct: 27  LAIDGYAWLHRAAHSCAEEL--ALGRPTSKYLEF--FIKRLNMLRNRFNINPYL--VFDG 80

Query: 68  PAVTFRNEIYPDYKANRPKIPE---------MLLPQLPLVRLATQA-------------- 104
            A+  + +     K  R +  E                  +                   
Sbjct: 81  DAIMVKKDTELKRKQKRAENKERALALWKAGDKRQAYDYFQKCVDVTPEMAKCVIEYCQV 140

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVSPTTCLYDTVK 159
             I  I    FEAD  +          G    IIS D DL+     +L++  T   + ++
Sbjct: 141 QDIKYIVAP-FEADAQMVYLEKKGLVHG----IISEDSDLLIFGCRKLITKLTDHGEGIE 195

Query: 160 EEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
             + D   +  K+    + PE+   +  L+G   D   GIP IG  TA  L++++  ++N
Sbjct: 196 ICRDDFPRLPSKFPLSQLCPEETRAMVCLSG--CDYTAGIPKIGLLTAMKLVRKHKTMDN 253

Query: 217 ILINAS-RIKQKKRRENILEY 236
           I+ N     K    +E + EY
Sbjct: 254 IIKNIQREGKFVVPKEFLEEY 274


>gi|255070381|ref|XP_002507272.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
 gi|226522547|gb|ACO68530.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
          Length = 1108

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 33/200 (16%)

Query: 41  FCNMLWKLLQNSRKESIAS-HFAVIF--DYPAVTFRNEIYPDYKANRPK----------- 86
           FC ML +  +          HFAV    D  +   R ++       R +           
Sbjct: 730 FCTMLSREGEMPNSNINPCFHFAVDAMSDVKSENHRQKLETMLDEARKEHALLQSEGKNA 789

Query: 87  -----IP-EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
                 P E +  Q   ++     FG+P +     EA+            EG    +I+ 
Sbjct: 790 ARGADTPTEEMYHQ---IQDLLTLFGVPYVIAPQ-EAE----AQCAWMNSEGLVDAVITE 841

Query: 141 DKDLMQLVSPTTCL--YDTVKE-EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           D D     + T     ++T K  E   +E++ +  G+   +M  L  L G   D   GIP
Sbjct: 842 DSDAFLFGASTVYRNVFNTKKYVEVYSVENIQRDIGLKRAQMAELALLLG--SDYTEGIP 899

Query: 198 GIGYKTAALLLQEYGNLENI 217
           G+G   A  +   +  ++ +
Sbjct: 900 GVGIVNALEIASVFSGMDGL 919


>gi|217072026|gb|ACJ84373.1| unknown [Medicago truncatula]
          Length = 187

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
                  I      +D   D +  +  +    +++      G + L    +   K   E+
Sbjct: 63  SPHSKIVIGFDCEAVDLCRDGALCIIQLAFPDAIYLVDAIEGGSVL----IEACKPALES 118

Query: 460 EHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRS 501
           ++  K+ H+ K D   L+ ++GI +    D  +   +L+    
Sbjct: 119 DYVTKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLLEEQEG 161


>gi|149191139|ref|ZP_01869398.1| ribonuclease D [Vibrio shilonii AK1]
 gi|148835067|gb|EDL52045.1| ribonuclease D [Vibrio shilonii AK1]
          Length = 289

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 93/287 (32%), Gaps = 50/287 (17%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  +    +++    K               +  F+ K   I +   +Q         +
Sbjct: 2   EYQIVTELAELESVCNKARESDVVMLDTEFVRIRTFYPKLGLIQLYDGEQLSLIDPLTIS 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            F                          +  ++   LK+ H    D  V    +G     
Sbjct: 62  DFTP----------------------FIELLQDASVLKVLHACGEDLEVFVNSFGCMPFP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +M+  L     S   A++  ++L     E+ KS   +  + +    +  ++A  +
Sbjct: 100 MVDTQIMAAFL-GHGLSTGFAALVDEYLGV---ELDKSESRADWVARPLTDKQLDYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEKLLH--------VYERLDKPMIDVVSQMEITGI-QIDQDLL- 595
              +  L+  L  ++  +            + ++  K      + ++I G+ Q+ +  L 
Sbjct: 156 VYYLWPLYFKLFAQVEAKDWWDAAQQESDLLMQKRGKTPNPDSAYLDIKGVWQLKRKQLA 215

Query: 596 -----------KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631
                      + +  +++ N +  E+ ++ ++  +F L  PKQ+ +
Sbjct: 216 ILKPLATWRMNEALKRDLALNFVIKEQELWSIA--RFALKKPKQMEE 260


>gi|9930001|dbj|BAB12157.1| hypothetical protein [Macaca fascicularis]
          Length = 415

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 6   QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 60

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 61  KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 118

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 119 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 178

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 179 GSFLWGKPDLEKIREFCQRYF 199


>gi|89094008|ref|ZP_01166952.1| ribonuclease D [Oceanospirillum sp. MED92]
 gi|89081682|gb|EAR60910.1| ribonuclease D [Oceanospirillum sp. MED92]
          Length = 397

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 82/232 (35%), Gaps = 30/232 (12%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                 + ++   I + + + +  +K   +   +       +D F+  P  I ++     
Sbjct: 9   WKHLEASAENPIWITSAEQLSECCEKWRNLPLIALDTEFQRVDTFYPLPGLIQVA----D 64

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           D   + +                  + L     S L   F++E  +K+ H    D  + H
Sbjct: 65  DQACYLI------------------DPLEISDFSSLSTLFKDEGVVKVMHAATEDLELFH 106

Query: 478 RY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
           +  G       D  + + +++ G S   +  + +  LS   +   K   +S  + +   S
Sbjct: 107 KEIGALPVPLFDTQIAAALINWGFSM-GLQRMLESCLSVQLE---KHETTSNWLQRPLTS 162

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
             +++A  +   +  ++ + R +L+       +  +++    +++   I  +
Sbjct: 163 SQEKYAALDVAYLPAIYEIQRQELLSRG---HFHWVEQECSAMLADAAIDDV 211


>gi|34558672|gb|AAQ75078.1| RAD2 [Cryptosporidium parvum]
          Length = 1147

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM----QLVSPTTC 153
           + L  +A GIP I+  G EA+   +  T +    G    ++S D D +    + +     
Sbjct: 883 ICLLLKALGIPWIDSPG-EAEAQASILTQLNICHG----VLSDDSDCLIFGAKKIFRNFF 937

Query: 154 LYDTVKEEKIDIEHVIKKWGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
             ++V  E  D+  V K  GI   E+   L  L G   D   G+ GIG   A  +L+ Y 
Sbjct: 938 SGNSV--EMYDLNQVKKYLGIEKQEQFYILAILLG--CDYTVGVNGIGPVNAVEVLKAYP 993

Query: 213 NLENIL 218
            LE+++
Sbjct: 994 ELEDMI 999


>gi|119470938|ref|ZP_01613522.1| putative RNase D, processing tRNA precursors [Alteromonadales
           bacterium TW-7]
 gi|119445960|gb|EAW27240.1| putative RNase D, processing tRNA precursors [Alteromonadales
           bacterium TW-7]
          Length = 376

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 63/203 (31%), Gaps = 27/203 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +  +V++++     +           + +   I +   +           
Sbjct: 2   QYQLIQTQVQLNTFVEQIQNKPILAIDTEFMRRRTLYPEVALIQVFDGE----------- 50

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG 485
                  H +           +    LK    +   LK+ H+   D  V  +Y G     
Sbjct: 51  -------HLALIDPLAELSLFDFWQVLK----DPAVLKVLHSPSEDIEVFQKYAGFVPAP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D      +L  G +    A + +  L     EI KS   +  + +   ++  ++A  +
Sbjct: 100 LFDTQFALQLLGEG-NCMGFALMVKTLLGI---EIDKSESRTNWLQRPLTTKQLDYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEKLLHV 568
           +  +L  + L+  ++    L  +
Sbjct: 156 TFHLLPCFELIIDRINNADLFEI 178


>gi|66356946|ref|XP_625651.1| XPG, DNA excision repair protein, flap endonuclease
           [Cryptosporidium parvum Iowa II]
 gi|46226699|gb|EAK87678.1| XPG, DNA excision repair protein, flap endonuclease
           [Cryptosporidium parvum Iowa II]
          Length = 1147

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM----QLVSPTTC 153
           + L  +A GIP I+  G EA+   +  T +    G    ++S D D +    + +     
Sbjct: 883 ICLLLKALGIPWIDSPG-EAEAQASILTQLNICHG----VLSDDSDCLIFGAKKIFRNFF 937

Query: 154 LYDTVKEEKIDIEHVIKKWGIP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
             ++V  E  D+  V K  GI   E+   L  L G   D   G+ GIG   A  +L+ Y 
Sbjct: 938 SGNSV--EMYDLNQVKKYLGIEKQEQFYILAILLG--CDYTVGVNGIGPVNAVEVLKAYP 993

Query: 213 NLENIL 218
            LE+++
Sbjct: 994 ELEDMI 999


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
          Length = 1438

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---LSVHTSQDS 439
           +L +     F I T  +    +K I +A +    +     +  T       +  H  Q +
Sbjct: 415 ELSSATYVVFDIETTGLSITANKIIELA-AVKMHEGKEIGRYATFVNPHERIPYHIQQLT 473

Query: 440 TGKNTLTKEILS---YLKKFFE-NEHFLKIGHNIKYDK----LVLHRYGISM--RGFEDI 489
              + + K+       LK+F E     + + HN ++D       L   G+      + D 
Sbjct: 474 NINDDMVKDAPELEPVLKEFVEFVGDGVLVAHNARFDMGFIQAALKNAGMDTLENPYLDT 533

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++ ++  G  +H + ++A K+
Sbjct: 534 LELARLVHPGLKNHRLNTLADKY 556


>gi|296224442|ref|XP_002758061.1| PREDICTED: flap endonuclease GEN homolog 1 [Callithrix jacchus]
          Length = 909

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A    +   +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLDMLECLGIPWVQAAG-EAEAMCAYLNAVGRVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDTF-LYGAQTVYRNFTMNTKDPHVDCYKMSSIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L+Q
Sbjct: 212 KGVPGVGKEQALKLIQ 227


>gi|169842262|ref|ZP_02875367.1| hypothetical protein cdivTM_34169 [candidate division TM7
           single-cell isolate TM7a]
          Length = 54

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907
               R    ++ S    +R   +RAA N PIQG+ AD+    +   
Sbjct: 4   WHICRRPTPDVKSSNFMVREAAKRAAANMPIQGTEADLMNTKINHF 49


>gi|157821963|ref|NP_001100187.1| flap endonuclease GEN homolog 1 [Rattus norvegicus]
 gi|149050926|gb|EDM03099.1| similar to RIKEN cDNA 5830483C08 gene (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 908

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  G+P ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLRE----CLEMLECLGMPWVQAAG-EAEAMCAYLNASGHVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  LLQ
Sbjct: 212 KGVPGVGKEQALKLLQ 227


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 15/144 (10%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIF-IDLSV------H 434
           KL       F + T  + A   + I I A+   +  +  SF+        +S        
Sbjct: 420 KLREATYVVFDVETTGLSAERDRLIEIAAVKVKNGAEIDSFESYINPERPISELITRLTS 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMRGFE--D 488
            + D      + KE+++    + + +  L + HN K+D         R G+  +     D
Sbjct: 480 ITDDDVRDAPVEKEVMTDFYNWLDEDDIL-VAHNAKFDLGFIDKSFERLGLENKNNASID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S   +     H ++++A+ +
Sbjct: 539 TLFISRAENKEAKRHGLSNLAKMY 562


>gi|188589009|ref|YP_001921284.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499290|gb|ACD52426.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
          Length = 974

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 73/201 (36%), Gaps = 21/201 (10%)

Query: 392 FKIITDTMDAFHSKPIAI--------AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
             I T  +D  + + I I        +++T +        V      L     ++    +
Sbjct: 14  LDIETTGLDENNCEIIEIGAVKIKNLSVTTYEVLIRPKGNVPVSIYKLCQGLKEEDLMNS 73

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSS 502
              ++I   L  F E+     I HN  +++  L  +   ++    D M +S +L+  R  
Sbjct: 74  RHLEDIKKELLVFLED--LPLICHNGGFERKFLSYHIPEIKNEIFDSMELSAILEPWRKE 131

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS---------NVILQLW 553
           +++ S+ +      + E  +  + SI   K+ +S +    I            N+I + +
Sbjct: 132 YNLDSLIKSITILDKDEFHRGLEDSIDTLKVVNSLLCREWIREESKKKNKSLYNIIDKDY 191

Query: 554 LLLRP-KLIVEKLLHVYERLD 573
             L+  +     L  +   ++
Sbjct: 192 EFLKYWEWKEYLLKPILFNIE 212


>gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
 gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
          Length = 827

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 92/279 (32%), Gaps = 16/279 (5%)

Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354
           D    +     ++ +  +   ++ +   +  I   +        +     QTP    L  
Sbjct: 124 DTKRPKSTTDRLDWSMKRANILKPQNTFEKKIDNFESGPWKPLLTSKPHAQTPLDASLTI 183

Query: 355 LQKLSQYPINNDSY-TKIVNTKDIQQWVQK--------LETIGSASFKIITDTMDAFHSK 405
                  P     Y  +I++ +      +         LE   +         ++     
Sbjct: 184 SVNDEGRPQYEHPYKQEIIDMQYPDHVFKSREPIGYPPLEKTTAIWVDTYEGVLEMLEEL 243

Query: 406 PIAIAIST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
             A  I+  L+  D  S+      + +S              +  L  L + F +   +K
Sbjct: 244 KKAPEIAIDLEHHDFRSYTGLLSLMQISTREKDWIIDTLVPWRHKLEVLNEVFADPKIVK 303

Query: 465 IGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523
           + H    D + L R  G+ + G  D    S  L    +   +A + +K++ +   +  K 
Sbjct: 304 VLHGAFMDIIWLQRDLGLYVVGLFDTFYASTALQ--YAGKSLAFLLKKFVDF---DADKK 358

Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            + +    +    ++  +A  +++ +L ++ +LR +L  
Sbjct: 359 YQLADWRLRPLPEEMFYYARSDTHFLLYIYDMLRNELAQ 397


>gi|118575473|ref|YP_875216.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
 gi|166973696|sp|A0RU95|FEN_CENSY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|118193994|gb|ABK76912.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
          Length = 340

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATY-----TYIAEKEGFAVTIISTDKDLMQLVS---- 149
           +   + FGIP I+    E +   A        Y +  + F   +    + +    +    
Sbjct: 136 KQILKLFGIPYIDAPS-EGEATAAYLTQTGDAYASASQDFDSVLFGAKRLVRNFTNSGRR 194

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P   +Y  V+ E I+ E  +    +  E++V +  L G   D  P G   IG KTA  
Sbjct: 195 KIPNRNMYVDVQPEIIETEKTLTTLDLTREQLVDVGILIG--TDFNPDGFERIGPKTALK 252

Query: 207 LLQEYGNLENILINASRIKQKKRRE 231
           L+ E+G LE+I      +      E
Sbjct: 253 LVHEHGRLEDIPRIQDELGSVSYAE 277


>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 375

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 61/194 (31%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
                     + T        +   I +         T   +      +     Q +   
Sbjct: 10  ASEQPLVFVDLETTGGSPAEHRITEIGVVEIGPGHMSTWTTLVNPGQPIPPFIQQLTGIS 69

Query: 443 NTLTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
           + + ++    + L    FE  +  L + HN  +D+  L     R G++        + +S
Sbjct: 70  DDMVRDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNPDVLCTVKLS 129

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    S H + ++ +++               +P         +  A+ ++++I Q W
Sbjct: 130 RALFPRESRHGLDALIERY-------------GLVP-------AARHRALADADLIWQFW 169

Query: 554 LLLRPKLIVEKLLH 567
             L   + +E+L  
Sbjct: 170 RQLHTLVPLERLRD 183


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---LSVHTSQDS 439
           +L +     F I T  +    +K I +A +    +     +  T       +  H  Q +
Sbjct: 415 ELSSATYVVFDIETTGLSITANKIIELA-AVKMHEGKEIGRYATFVNPHERIPYHIQQLT 473

Query: 440 TGKNTLTKEILS---YLKKFFE-NEHFLKIGHNIKYDK----LVLHRYGISM--RGFEDI 489
              + + K+       LK+F E     + + HN ++D       L   G+      + D 
Sbjct: 474 NINDDMVKDAPELEPVLKEFVEFVGDGVLVAHNARFDMGFIQAALKNAGMDTLENPYLDT 533

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++ ++  G  +H + ++A K+
Sbjct: 534 LELARLVHPGLKNHRLNTLADKY 556


>gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Pichia angusta DL-1]
          Length = 729

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 87/239 (36%), Gaps = 34/239 (14%)

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
           +I ++  P  +  ++    S      D  T I N   +   + +L      +  +     
Sbjct: 191 EIMNQPYPDWILQQQESFDSIPWKECDEPTWIDNPAQLDDLLVELSKCKVIAVDLE---- 246

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI--LSYLKKFF 457
                             D  ++   T  + L+  T +D        +    L  L   F
Sbjct: 247 ----------------HHDYRTYHGITCLMQLTTDTKKDYLIDPLSPELRPHLVNLNVIF 290

Query: 458 ENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
            + + +K+ H    D + L R  G+ +    D    S  L  G   H +A + + ++ + 
Sbjct: 291 TDPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASREL--GLGRHSLAHLLETYVKFK 348

Query: 517 RKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYER 571
                 S+K  +   ++   +S+++ +A  +++ +++++  +  +L+   +KL  V   
Sbjct: 349 T-----SKKWQLADWRMRPLNSEMKNYAKADTHFLIEVFYKMHSELVQNPDKLKKVLYE 402


>gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66]
 gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66]
          Length = 1029

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 7/144 (4%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
           D         E LS L +   N   LK+ H   YD + L R + + +    D    + VL
Sbjct: 428 DYIIDPFPLFEELSRLNELTTNPRILKLFHGSDYDIIWLQRDFSVYVVNMFDTGQAARVL 487

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           ++    + + ++   +      E  K  + S   ++     + E+A  +++ +  ++ ++
Sbjct: 488 NTP-GGYSLGNLLNLY---CSVEANKQYQLSDWRERPLPQHLIEYARSDTHYLPYIYDIM 543

Query: 557 RPKLIV--EKLLHVYERLDKPMID 578
           + +L++   K   ++  L  P +D
Sbjct: 544 KNQLLLLGNKSHGLFISLKDPFMD 567


>gi|166085113|dbj|BAF99821.1| flap endonuclease-1 [Aeropyrum pernix]
          Length = 317

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 28/192 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEK-----EGFAVTIISTDKDLMQLVS---- 149
           +    A G+P ++    E +   A      +      + +   +  + + +  L      
Sbjct: 106 KELLDAMGMPWVQAPA-EGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRR 164

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG-IPGIGYKTAAL 206
             P    Y  +K E I++E ++ K GI  E+++ +  L G   D  PG + G G KTA  
Sbjct: 165 KLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLG--TDYNPGGVRGYGPKTALR 222

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L++  G+   +L +  R   +   + + +  E       L    TD      +E      
Sbjct: 223 LVKSLGDPMKVLASVPR--GEYDPDYLRKVYE-----YFLNPPATD---DYKIE---FRK 269

Query: 267 CNGPRLISFLKA 278
            +  ++   L  
Sbjct: 270 PDQDKVREILVE 281


>gi|166085105|dbj|BAF99817.1| flap endonuclease-1 [Aeropyrum pernix]
          Length = 317

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 28/192 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEK-----EGFAVTIISTDKDLMQLVS---- 149
           +    A G+P ++    E +   A      +      + +   +  + + +  L      
Sbjct: 106 KELLDAMGMPWVQAPA-EGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRR 164

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P    Y  +K E I++E ++ K GI  E+++ +  L G   D  P GI G G KTA  
Sbjct: 165 KLPGRDQYVEIKPEIIELESLLSKLGITREQLIAVGILLG--TDYNPGGIRGYGPKTALR 222

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L++  G+   +L +  R   +   + + +  E       L    TD      +E      
Sbjct: 223 LVKSLGDPMKVLASVPR--GEYNPDYLRKVYE-----YFLNPPATD---DYKIE---FRK 269

Query: 267 CNGPRLISFLKA 278
            +  ++   L  
Sbjct: 270 PDQDKVREILVE 281


>gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
 gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
          Length = 616

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 18/137 (13%)

Query: 392 FKIITDTMDAFHSK---------PIAIAISTLDQKDDTSFKVETIFID-LSVHTSQDSTG 441
           F   T  +                +   I   +  D        I +D + VH  Q    
Sbjct: 425 FDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVRVHGIQPVLL 484

Query: 442 KN-TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR----YGISM-RGFEDIMLMSYV 495
           ++    +E+L    +F  +   + +GHN+ +D   + +     G+   +   D ML++ V
Sbjct: 485 QDKPPIEEVLPRFYRFARD--TVLVGHNVAFDLKFIRQKEKALGLRFDQPVLDTMLLAAV 542

Query: 496 LDSGRSSHDIASIAQKW 512
           +D  R  + +  +A  +
Sbjct: 543 VDPERQHYGLDELAAAF 559


>gi|294654453|ref|XP_456510.2| DEHA2A04334p [Debaryomyces hansenii CBS767]
 gi|199428893|emb|CAG84465.2| DEHA2A04334p [Debaryomyces hansenii]
          Length = 776

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 32/236 (13%)

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
           +I+S+  P  +  ++ + +   P +  S   + +   + + +  L      +  +     
Sbjct: 204 EIDSQPYPDSILTKK-EPIPSKPWSKTSAIWVDSVDVLNEMISLLSEQSEIAIDLE---- 258

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
                             D  S+      + +S    QD        ++ L  L K F N
Sbjct: 259 ----------------HHDYRSYYGIVCLMQIS-SRDQDWIIDTLKLRDDLESLNKVFTN 301

Query: 460 EHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
              +K+ H    D + L R  G+ +    D    S               +  +L  T  
Sbjct: 302 PDIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHAS-------KKLGFPKFSLAYLLETFA 354

Query: 519 EILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
               S+K  +   +I      +  +A  +++ +L ++  LR KLI      + E L
Sbjct: 355 NFKTSKKYQLADWRIRPLSPPMLAYARSDTHFLLNIYDQLRNKLIDAGANRLQEVL 410


>gi|195570818|ref|XP_002103401.1| GD20396 [Drosophila simulans]
 gi|194199328|gb|EDX12904.1| GD20396 [Drosophila simulans]
          Length = 896

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 80/220 (36%), Gaps = 27/220 (12%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P    L++ + +    +       +   + ++Q +++L      +  +   +   F   
Sbjct: 249 EPPTEQLQKQKPVLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHSYRTF--- 305

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + I+ L Q                   S+D      + ++ +  L     +   LKI
Sbjct: 306 ---MGITCLVQMST---------------RSKDYIFDTLILRDDMHILNLVLTDPKKLKI 347

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D   L R   + +    D    +  L+  R S  +A + + +L     ++ KS 
Sbjct: 348 LHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLS--LAYLLKHYLDL---DVDKSL 402

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           + +    +    Q+ ++A ++++ ++ ++  +   L+ ++
Sbjct: 403 QLADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLQQQ 442


>gi|84501108|ref|ZP_00999343.1| ribonuclease D [Oceanicola batsensis HTCC2597]
 gi|84391175|gb|EAQ03593.1| ribonuclease D [Oceanicola batsensis HTCC2597]
          Length = 385

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 76/196 (38%), Gaps = 22/196 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T+D+  +  +  +    +          ++S+   I ++   + D+ +  ++    
Sbjct: 3   TITTTEDLAAFCNEAASCDYVTVDTEFLRERTYYSQLCLIQMAMPGEDDENAVLID---- 58

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
            LS +               L+ L + F N+  +K+ H  + D  + +   G+  +   D
Sbjct: 59  PLSGNLD-------------LAPLYELFRNQAVVKVFHAARQDLEIFYVDAGVIPQPLFD 105

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + + V   G       ++ ++     ++++ KS + +    +      +++A+ +   
Sbjct: 106 TQIAAMVCGFGEQV-GYETLVKR---IAKQQLDKSSRFTDWSRRPLTEAQKKYALADVTH 161

Query: 549 ILQLWLLLRPKLIVEK 564
           + +++  L  KL  +K
Sbjct: 162 LRKIYEYLADKLRRQK 177


>gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
 gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
          Length = 198

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 12/132 (9%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF--KVETIFIDLSVHTSQDSTGKNTLT 446
             +F + T  +D      + IA       +  +F   +      +    ++     +   
Sbjct: 21  VVTFDLETTGLDPVRHSVVEIACVKFQGGEPRAFFSLLVKPPHPIPAEVTKIHGIGDQDV 80

Query: 447 KEI--LSYLKKFFEN--EHFLKIGHNIKYDKLVL----HRYGISMRGFE--DIMLMSYVL 496
           +E   L  +    E+     L + HN  +D   L     R G    GF   D  L++  +
Sbjct: 81  EEAPPLPSVLPMLESFVGTHLLVAHNAPFDLSFLRMEYARCGRPYPGFRAIDTRLLARSV 140

Query: 497 DSGRSSHDIASI 508
                 + +AS+
Sbjct: 141 LPHLGRYSLASL 152


>gi|305682188|ref|ZP_07404992.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
 gi|305658661|gb|EFM48164.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 19/153 (12%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET-IFIDLS--- 432
           +    Q    +   SF + T + + F ++ +  A+  +D       +      + +    
Sbjct: 1   MDSLTQPFNPLKVLSFDLETTSANPFEARIVTSALVHIDSGGAHPQEFLADPGVPIPEAA 60

Query: 433 ---------VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--GI 481
                          S   + L + I +  K + +      I +N  YD  VLH    G 
Sbjct: 61  TKVHGITTEYAREHGSPHADVLAETIAAIRKAWTDGYTL--IVYNASYDLTVLHSLEPGF 118

Query: 482 SMRG-FEDIMLMSYVLDSGRSSH-DIASIAQKW 512
            + G   D  +M  +LD  R     + ++ +++
Sbjct: 119 LITGPVYDPYVMDKLLDPYRRGKRTLTALCEEY 151


>gi|166085107|dbj|BAF99818.1| flap endonuclease-1 [Aeropyrum pernix]
          Length = 317

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 28/192 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEK-----EGFAVTIISTDKDLMQLVS---- 149
           +    A G+P ++    E +   A      +      + +   +  + + +  L      
Sbjct: 106 KELLDAMGMPWVQAPA-EGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRR 164

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
             P    Y  +K E I++E ++ K GI  E+++ +  L G   D  P GI G G KTA  
Sbjct: 165 KLPGRDQYVEIKPEIIELESLLSKLGITREQLIAVGILLG--TDYNPGGIRGYGPKTALR 222

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L++  G+   +L +  R   +   + + +  E       L    TD      +E      
Sbjct: 223 LVKSLGDPMKVLASVPR--GEYDPDYLRKVYE-----YFLNPPATD---DYKIE---FRK 269

Query: 267 CNGPRLISFLKA 278
            +  ++   L  
Sbjct: 270 PDQDKVREILVE 281


>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
 gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
          Length = 379

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 65/202 (32%), Gaps = 36/202 (17%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF--------KVETIFID 430
             +        A   + T    A   +   I +  ++    +++         +      
Sbjct: 5   SLIHPAIDTPLAFVDLETTGGSAVEHRITEIGVVVVNANHVSTWTTLVDPQQPIPPFIQQ 64

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRG- 485
           L+  T     G  T      + L++    +  L + HN  +D+  L     R G++    
Sbjct: 65  LTGITDAMVRGAPTFADIAPALLERL---DGKLFVAHNASFDRGFLRAEFERAGVAFNPD 121

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
               + +S  L    S H + ++ ++              + +P         +  A+ +
Sbjct: 122 VLCTVRLSRALFPRESRHGLDALIERH-------------ALVP-------SARHRALAD 161

Query: 546 SNVILQLWLLLRPKLIVEKLLH 567
           +++I Q W  L   +  E+L  
Sbjct: 162 ADLIWQFWQKLHGAIPAEQLRE 183


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 15/144 (10%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------H 434
           +L+      F + T  + A   + I I A+   +  +  SF+        +S        
Sbjct: 423 RLKDATYVVFDVETTGLSAERDRLIEIAAVKVKNGSEIDSFESYINPRRPISELITRLTS 482

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISMRGFE--D 488
            + D        +E+++    + + +  L + HN K+D   L     R G+  +     D
Sbjct: 483 ITDDDVKDAPFEEEVMTNFYNWLDEDDIL-VAHNAKFDLGFLDKSFERLGLKNKNNASID 541

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S   +     H ++++A+ +
Sbjct: 542 TLFISRAENKEAKRHGLSNLAKLY 565


>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
          Length = 379

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 36/201 (17%)

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF--------KVETIFIDL 431
            +        A   + T    A   +   I +  ++    +++         +      L
Sbjct: 6   LIHPAIDTPLAFVDLETTGGSAVEHRITEIGVVVVNANHVSTWTTLVDPQQPIPPFIQQL 65

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRG-F 486
           +  T     G  T      + L++    +  L + HN  +D+  L     R G++     
Sbjct: 66  TGITDAMVRGAPTFADIAPALLERL---DGKLFVAHNASFDRGFLRAEFERAGVAFNPDV 122

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
              + +S  L    S H + ++ ++              + +P         +  A+ ++
Sbjct: 123 LCTVRLSRALFPRESRHGLDALIERH-------------ALVP-------SARHRALADA 162

Query: 547 NVILQLWLLLRPKLIVEKLLH 567
           ++I Q W  L   +  E+L  
Sbjct: 163 DLIWQFWQKLHGAIPAEQLRE 183


>gi|126735792|ref|ZP_01751537.1| ribonuclease D [Roseobacter sp. CCS2]
 gi|126714979|gb|EBA11845.1| ribonuclease D [Roseobacter sp. CCS2]
          Length = 385

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 67/195 (34%), Gaps = 22/195 (11%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T+D+  + Q+       +          ++SK   + ++  D     +  ++ + 
Sbjct: 2   KTITTTEDLAAFCQEAAKRAYVTVDTEFLRERTYYSKLCLVQLAYQDDSGADAVLLDPLV 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
             LS                 L  L   F++   +K+ H  + D  + +   G+      
Sbjct: 62  DGLS-----------------LEPLYDLFKDHGVVKVFHAARQDLEIFYVDAGVIPEPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V   G       ++ +K    T+ ++ KS + +    +       ++A+ +  
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVRK---ITKSDLDKSSRFTDWSRRPLTDAQAKYALADVT 160

Query: 548 VILQLWLLLRPKLIV 562
            +  ++  L  +L  
Sbjct: 161 HLRDIYEHLSARLAK 175


>gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72]
 gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72]
          Length = 734

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 84/251 (33%), Gaps = 47/251 (18%)

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI-GSASFKIITDTMDAF 402
              PQ+   E +   +        +     ++  +    +L T      F   T  ++  
Sbjct: 498 AAMPQEQLDESMLLRADSRPEYYDFDLFKWSERSRALEDRLLTELTYTVFDTETTGLNPS 557

Query: 403 HS-KPIAIA----ISTLDQKDDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILS 451
              + I I     ++    + +   ++      L   +++      D      + + +L 
Sbjct: 558 QGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITADMLAGQPVIEAVLP 617

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH--------RYGISMRGFEDIMLMSYVLDSGRSSH 503
               F  +   + + HN  +D   L         R+    +   D +L+S V+   + SH
Sbjct: 618 SFHAFAAD--TVLVAHNAAFDMRFLQLKEDLTGLRFD---QPVLDTLLLSAVIHPNQDSH 672

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-AIENSNVILQLWLLLRPKLIV 562
            + +IA++                     +  + V  H A+ ++ V  +++L L P L  
Sbjct: 673 RLEAIAER---------------------LGITVVGRHTALGDAMVTAEVFLKLVPLLAE 711

Query: 563 EKLLHVYERLD 573
           + +  + E  +
Sbjct: 712 KGIRTLREARE 722


>gi|55957425|emb|CAI14531.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 5 (xeroderma pigmentosum,
           complementation group G (Cockayne syndrome)) [Homo
           sapiens]
          Length = 419

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 6   QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 60

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 61  KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 118

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 119 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 178

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 179 GSFLWGKPDLDKIREFCQRYF 199


>gi|303270955|ref|XP_003054839.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462813|gb|EEH60091.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           V+     FGIP I     EA+   A      ++EGF   +I+ D D     + T      
Sbjct: 5   VQQLLTLFGIPYIIAPQ-EAEAQCAWL----DREGFVDAVITDDSDAFLFGAKTIYRNVF 59

Query: 158 VKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             +   E  D   V    G+   KM  L  L G   D   G+ G+G   A  ++  +  +
Sbjct: 60  ESKKYVEFYDANRVDADLGLDRAKMAQLALLLG--SDYTEGVTGVGIVNALEVVLNFPGV 117

Query: 215 ENILINAS-----------------RIKQKKRRENILEYAETARLSRKLVMLRTDVPITI 257
           E +   A                  ++K +  ++      +    S +++    +  +  
Sbjct: 118 EGLTKFAEWVGESEFTGKPAAIREFKLKHRTLKKAWELPRD--FPSERVLDAYANPSVDA 175

Query: 258 PLEHLILEDCNGPRLISFLKALEFTK 283
             E     + +   L  F       +
Sbjct: 176 SREKFEWGEPDLDALRLFCGEHFAWR 201


>gi|224136982|ref|XP_002322464.1| predicted protein [Populus trichocarpa]
 gi|222869460|gb|EEF06591.1| predicted protein [Populus trichocarpa]
          Length = 541

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 17/179 (9%)

Query: 84  RPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD 143
           R  +       +   +    A GIP ++    EA+   A     +  +G      S+D D
Sbjct: 112 RRNMGSEFSCMIKEAKDIGLALGIPCLDSIE-EAEAQCALLNTESLCDG----CFSSDSD 166

Query: 144 LMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGI 199
           +  L    T   D    E      ++E V +K G     ++ L  + G   D  PG+ G+
Sbjct: 167 VF-LFGARTVYRDICLGEGHVVCYEMEEVERKLGFGRNSLITLALILG--SDYSPGVHGL 223

Query: 200 GYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258
           G ++A  +++  G+  N+L   +        + I    +  R S+K      D  I   
Sbjct: 224 GPESACQIVKSIGD-SNVLQKIASEGLP-FAKKIKTSKKQMR-SKK--TNSLDSEIHFN 277


>gi|166085109|dbj|BAF99819.1| flap endonuclease-1 [Aeropyrum pernix]
 gi|166085111|dbj|BAF99820.1| flap endonuclease-1 [Aeropyrum pernix]
          Length = 317

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 28/192 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEK-----EGFAVTIISTDKDLMQLVS---- 149
           +    A G+P ++    E +   A      +      + +   +  + + +  L      
Sbjct: 106 KELLDAMGMPWVQAPA-EGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRR 164

Query: 150 --PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG-IPGIGYKTAAL 206
             P    Y  +K E I++E ++ K GI  E+++ +  L G   D  PG + G G KTA  
Sbjct: 165 KLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLG--TDYNPGGVRGYGPKTALR 222

Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266
           L++  G+   +L +  R   +   + + +  E       L    TD      +E      
Sbjct: 223 LVKSLGDPMKVLASVPR--GEYDPDYLRKVHE-----YFLNPPATD---DYKIE---FRK 269

Query: 267 CNGPRLISFLKA 278
            +  ++   L  
Sbjct: 270 PDQDKVREILVE 281


>gi|39973915|ref|XP_368348.1| hypothetical protein MGG_00896 [Magnaporthe oryzae 70-15]
 gi|145018155|gb|EDK02434.1| hypothetical protein MGG_00896 [Magnaporthe oryzae 70-15]
          Length = 854

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 81/217 (37%), Gaps = 28/217 (12%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           +   ++   +   PI   S T +   + + + ++ L+     +  +              
Sbjct: 238 ESVYQKRDPIPYTPIAKSSPTYVDTYEGVLEMLEDLKQAKEIAVDLE------------- 284

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
                    D  ++      + +S              ++ L  L + F +   +K+ H 
Sbjct: 285 -------HHDFRTYHGLLSLMQISTREKDWIVDTLKPWRQQLEILNEVFADPSIVKVFHG 337

Query: 469 IKYDKLVLHR-YGISMRGFEDIMLMS-YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
              D + L R  G+ + G  D    +  ++   +S   +A + +K++ +   E  K  ++
Sbjct: 338 AFMDIVWLQRDLGLYVVGLFDTFHAAEALMYPSKS---LAYLLKKFVDF---EADKRYQT 391

Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
           +    +    ++  +A  +++ +L ++ ++R +L+ +
Sbjct: 392 ADWRIRPLPEEMLYYARSDTHYLLYVYDMMRNELLRQ 428


>gi|195390616|ref|XP_002053964.1| GJ23053 [Drosophila virilis]
 gi|194152050|gb|EDW67484.1| GJ23053 [Drosophila virilis]
          Length = 904

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 80/221 (36%), Gaps = 27/221 (12%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P K  L++ + L   P        + N + ++Q +++L      +  +   +   F   
Sbjct: 252 EPPKEQLQKQKPLLPAPPAQTELMLVDNVETLKQALEELRQAPQIAIDVEHHSYRTF--- 308

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + I+ L Q                   ++D        +E +  L     +   LKI
Sbjct: 309 ---MGITCLVQMST---------------RTKDYIFDTLTLREDMHILNLVLTDPKVLKI 350

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D   L R   + +    D    +  L+  R S  +A + + +L     ++ KS 
Sbjct: 351 LHGGDLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLS--LAFLLKHYLDL---DVDKSL 405

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           + +    +    ++ ++A ++++ ++ ++  L   L+  + 
Sbjct: 406 QLADWRMRPLPQKLIDYARQDTHYLIYVYERLTNDLLQAEQ 446


>gi|157876102|ref|XP_001686412.1| exosome subunit rrp6p homologue [Leishmania major strain Friedlin]
 gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain
           Friedlin]
          Length = 742

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 103/306 (33%), Gaps = 48/306 (15%)

Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ-----------TSKIN 342
            DAA+    VL +       +  +T +D         +   S Q            S I 
Sbjct: 148 ADAASTRAGVLRLAHIRRPQLLFDTPVDNSAAPFVPHYYDASGQYHVGVAGQHPFESVIK 207

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           +   P    L R +     P++    T +  +  +Q  ++KL      +  +        
Sbjct: 208 AFSIPASQILPRAEV-PPVPLDACPLTFVDTSAAMQAMIEKLLLSREIAVDLE------- 259

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
                          D  S++  T  + +S    +D        +  +  L   F N   
Sbjct: 260 -------------HHDFYSYQGFTCLMQIST-REEDFIVDCLKLRSSMGALAPVFLNPSI 305

Query: 463 LKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           LK+ H  + D   L + + + +    D  +    L      H   S+A     + + ++ 
Sbjct: 306 LKVLHGAREDIRWLQKDFSLYVVNLFDTGVALQTL------HMPYSLAFAVDHFCQVKLN 359

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--------LLHVYERLD 573
           K  +++    +   +++  +A ++++ +L +   L+  L+  +        L+HVY    
Sbjct: 360 KKYQTADWRVRPLSAEMVHYARQDTHFLLYVHDRLKALLLNSEGRASIGSVLVHVYNESK 419

Query: 574 KPMIDV 579
           +  + +
Sbjct: 420 QLSLQI 425


>gi|63054485|ref|NP_593004.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|6226742|sp|Q10146|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName:
           Full=Ribosomal RNA-processing protein 6
 gi|159883898|emb|CAA93168.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe]
          Length = 777

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 77/210 (36%), Gaps = 27/210 (12%)

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E    +    ++      +     +   +++L+     +  +                  
Sbjct: 203 EMSNPIDTGSVDETEPIWVSTESQLSDMLKELQNSKEIAVDLE----------------- 245

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                D  SF+     + +S +  +D        +E L  L   F N + +K+ H    D
Sbjct: 246 ---HHDYRSFRGFVCLMQIS-NREKDWIVDTLELREELEALNVVFTNPNIIKVFHGATMD 301

Query: 473 KLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
            + L R +G+ +    D    + VL  G   H +A + QK+  Y   +  K  + +    
Sbjct: 302 IIWLQRDFGLYVVNLFDTYYATKVL--GFEGHGLAFLLQKYCDY---DADKRYQMADWRI 356

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           +    ++ ++A  +++ +L +W  LR +LI
Sbjct: 357 RPLPREMLKYAQSDTHYLLYIWDHLRNELI 386


>gi|9634026|ref|NP_052100.1| exonuclease [Yersinia phage phiYeO3-12]
 gi|6599017|emb|CAB63621.1| exonuclease [Yersinia phage phiYeO3-12]
          Length = 303

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 19/214 (8%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPV----NA-IAGFCNMLWKLLQNSRKE 55
           M+K   + ++DG   +Y++  A  + +   D +      +A      +   +  +  +K 
Sbjct: 18  MEKG--VLVMDGDWLVYQSMAAAEVETDWGDDIWTLECDHAKARSILDSAIESYRTRKKA 75

Query: 56  SIASHFAVIFDYPAVTFRNEIYPD-YKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114
              +   + F    V +R  +  + YK NR    + +      +    +      I+   
Sbjct: 76  WSDAMVVLAF-TDDVNWRKVLVDETYKENRKATRKPVGY-RDFLSKLWERDEFIHIKEDM 133

Query: 115 FEADDIIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173
            E DD++       E  GF    ++S DKD    +     L+ T        +       
Sbjct: 134 LEGDDVMGIIGSGHEVFGFKKAVLVSCDKDFKT-IPDVDFLWCTTGNILTQTKE------ 186

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
              +     Q + GD  D   GIPG G    A L
Sbjct: 187 -TADWWHLFQTIKGDMTDGYSGIPGWGDTAEAFL 219


>gi|311258442|ref|XP_003127631.1| PREDICTED: exosome component 10-like [Sus scrofa]
          Length = 759

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 94/304 (30%), Gaps = 42/304 (13%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L  +  E      E   
Sbjct: 175 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKDRRERPQDRPEDLD 232

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +          TP +  L++ +     P+       + 
Sbjct: 233 VPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQKPEPQLYRPVEETPCHFVS 292

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 293 SLDELVELNEKLLKCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 332

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 333 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVI 549
            + +L+     H +  + + + S     +  +++  +   +I     ++  +A ++++ +
Sbjct: 392 AARLLN--LGRHSLDHLLKLYCS-----VESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444

Query: 550 LQLW 553
           L ++
Sbjct: 445 LYIY 448


>gi|15669635|ref|NP_248448.1| flap endonuclease-1 [Methanocaldococcus jannaschii DSM 2661]
 gi|17432937|sp|Q58839|FEN_METJA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|157829719|pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
 gi|157829720|pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
 gi|1592090|gb|AAB99454.1| DNA repair protein RAD2 (rad2) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 326

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 48/233 (20%)

Query: 10  VDGSSFIY------RAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           +DG + +Y      R    +PL +RK  G   +A  G     +K +     +        
Sbjct: 26  IDGMNALYQFLTSIRLRDGSPLRNRK--GEITSAYNGVF---YKTIHLLENDITP---IW 77

Query: 64  IFD-------YPAVTFRNEIYPDY--KANRPKIPEMLLPQLPLVRL-------------- 100
           +FD             R E+      K       E         +               
Sbjct: 78  VFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKY 137

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
                GIP +E    E +   +         G    ++S D D +   +P      T  +
Sbjct: 138 LLSLMGIPYVEAPS-EGEAQASYMAKK----GDVWAVVSQDYDALLYGAPRVVRNLTTTK 192

Query: 161 E---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQ 209
           E    I++  V++   I  + ++ +    G   D  P G+ GIG+K A  L++
Sbjct: 193 EMPELIELNEVLEDLRISLDDLIDIAIFMG--TDYNPGGVKGIGFKRAYELVR 243


>gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis]
          Length = 827

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 116/363 (31%), Gaps = 53/363 (14%)

Query: 271 RLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ 330
            + +F   + F      +           + +   +N  ++K      EI  +      Q
Sbjct: 158 AVENFSDEMHFHNKRRFIPK---PQLKFRDQIDNSLNPFKSKLRIKHHEISPEKLSSGLQ 214

Query: 331 FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQ-QWVQKLETIGS 389
             + +      +    P    +   +  S      +    I+     +   V  L +  +
Sbjct: 215 QHADNAGMEYSSEPAHPYYYEIITCEPNSLMLSIKEPQHPIMPLNACKLSLVNDLNSQQA 274

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDT-SFKVETIFIDLSVHTSQDSTGKNTLTKE 448
            +  +  ++  +++     + IST D       F +      L+                
Sbjct: 275 FAVDLEHNSYRSYYGLTCLLQISTRDTDYIVDPFPIWHEMYILNEP-------------- 320

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
                   F + + +K+ H    D   L R +GI +    D      VL+  + S  +  
Sbjct: 321 --------FVDPNIVKVMHGSSQDIQWLQRDFGIYVVNLFDTYHAMEVLEMPQRS--LKF 370

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           + ++ +      + KS +++    +   S++  +A  +S+ +L  W +LR +L+     +
Sbjct: 371 LVKELVGVN---LDKSYQTADWRIRPLGSKMLAYARSDSHYLLYCWDVLRNQLLNRG--N 425

Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI--SKNLLSLEENIYDLSGEKFNLSS 625
            Y  L      V+ +   T        L+    +      L  LE          FNL +
Sbjct: 426 EYNDLMM---IVLKRSSDT-------CLQVYKKKFPNEFELRKLESKF------PFNLDN 469

Query: 626 PKQ 628
            ++
Sbjct: 470 RQK 472


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 16/145 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVET-IFIDLSV------ 433
           + L+      F + T  +   + + I +A +   D +    F+  +     LS       
Sbjct: 415 RDLKDATYVVFDVETTGLSNQYDQIIELAAVKVYDGEIIDKFERFSNPHQKLSETIINLT 474

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFE 487
           H + D         E+L+  K++  +   + + HN  +D         R G      G  
Sbjct: 475 HITDDMLTDAPEIDEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERIGFGPSTNGVI 532

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + +S  +++    H +  +A+K+
Sbjct: 533 DTLELSRTINTEYGKHGLNFLAKKY 557


>gi|167855622|ref|ZP_02478381.1| ribonuclease D [Haemophilus parasuis 29755]
 gi|167853249|gb|EDS24504.1| ribonuclease D [Haemophilus parasuis 29755]
          Length = 388

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 99/346 (28%), Gaps = 67/346 (19%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  + +   + Q   ++      +          ++ K   I +    Q         T
Sbjct: 19  EYQWVDDNPSLAQMCLQVAEQSVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSIT 78

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RG 485
            F   +                          NE+ LK+ H    D  V   Y   + + 
Sbjct: 79  DFSPFTA----------------------LLTNENVLKVLHACSEDLEVFQHYFKQLPQP 116

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +M+  +  G S    A +A  +L     E+ K    +  + +       ++A  +
Sbjct: 117 MLDTQVMAGFVGIGISI-GFAKLALHYLEV---ELDKGASRTDWLSRPLSEIQLQYACAD 172

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
              +L ++  L   L    L       +     +++              K+   E    
Sbjct: 173 VWYLLPIYHKLAEDLAK-TLWQTAVVEE--CATLLA--------------KRQIVEDPNK 215

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
           +     N + L          +Q   IL    K+               ++ E+ +   N
Sbjct: 216 VYKEISNAWQL---------NQQELAILQILAKWRI-------------EEAEKRDLALN 253

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            IIK      Q++K++  +   L   ++    R+H    L     G
Sbjct: 254 FIIKE-QSLLQIAKLQPKHTSILLEFMHPNEVRIHGKKILWLVEQG 298


>gi|148807577|gb|ABR13589.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 147

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
           +FN+ S KQ+   L   +      +T+ G      + LE +   D P  K I E+  L K
Sbjct: 46  EFNVXSRKQIAXRL-EGVGVKFKLQTEKGAIIVNEKVLEGL---DIPEAKMIYEYLMLQK 101

Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725
            ++   DS   H  ++  RVH        +TGR+    PNL  +P 
Sbjct: 102 -RAAQIDSWXTH--EKDGRVHRRVITNGAVTGRMTHHCPNLTQVPS 144


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 408 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 465

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 466 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 523

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 524 IDTLELSRFLYPHFKSHRLNTLSKKF 549


>gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
          Length = 383

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 64/202 (31%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N   +T I N +++ Q  Q      + +       +  ++ K   I +   ++     
Sbjct: 5   CQNQPHFTLIQNNEELAQVCQLARQQSAVALDTEFMRVSTYYPKLGLIQLYDGERVSLID 64

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYG 480
               T F                          +   ++   KI H    D LV L  + 
Sbjct: 65  PLSITDFSP----------------------FVELLRDQLVTKILHACNEDLLVFLQEFD 102

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              +   D  +M+  L    +S  +A +   +L     E+ K    +  + +       +
Sbjct: 103 ALPQPMMDTQIMARFL-GFANSAGLAKLVLHYLGI---EMDKGATRTNWLKRPLSPVQLQ 158

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L ++  ++ +L  
Sbjct: 159 YAAGDVWYLLPVYQKMQIELAQ 180


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 408 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 465

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 466 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 523

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 524 IDTLELSRFLYPHFKSHRLNTLSKKF 549


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 408 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 465

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 466 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 523

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 524 IDTLELSRFLYPHFKSHRLNTLSKKF 549


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 408 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 465

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 466 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 523

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 524 IDTLELSRFLYPHFKSHRLNTLSKKF 549


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 408 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 465

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 466 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 523

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 524 IDTLELSRFLYPHFKSHRLNTLSKKF 549


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 408 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 465

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 466 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 523

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 524 IDTLELSRFLYPHFKSHRLNTLSKKF 549


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 408 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 465

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 466 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 523

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 524 IDTLELSRFLYPHFKSHRLNTLSKKF 549


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 408 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 465

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 466 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 523

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 524 IDTLELSRFLYPHFKSHRLNTLSKKF 549


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 408 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 465

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 466 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 523

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 524 IDTLELSRFLYPHFKSHRLNTLSKKF 549


>gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
 gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
          Length = 412

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 47/145 (32%), Gaps = 18/145 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSK-PIAIA----ISTLDQKDDTSFKVETIFIDLS------ 432
           L+++    F   T  +        ++IA    ++      ++  ++      +       
Sbjct: 214 LKSLTFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRY 273

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMR-GFE 487
              + D          +L   + +  +   + + HN  +D   L       GI       
Sbjct: 274 HGITDDMVVDKPPAGVVLPQFRSYVADA--VLVAHNAAFDLKFLRMREKDMGIRFDIPVL 331

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D M++S  LD   + H +  I  ++
Sbjct: 332 DTMILSNFLDGPDAGHSLDDICDRY 356


>gi|219870644|ref|YP_002475019.1| ribonuclease D [Haemophilus parasuis SH0165]
 gi|219690848|gb|ACL32071.1| ribonuclease D [Haemophilus parasuis SH0165]
          Length = 375

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 97/346 (28%), Gaps = 67/346 (19%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  + +   + Q   ++      +          ++ K   I +    Q         T
Sbjct: 6   EYQWVDDNPSLAQMCLQVAEQSVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSIT 65

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RG 485
            F   +                          NE+ LK+ H    D  V   Y   + + 
Sbjct: 66  DFSPFTA----------------------LLANENVLKVLHACGEDLEVFQHYFKQLPQP 103

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +M+  +  G S    A +A  +L     E+ K    +  +         ++A  +
Sbjct: 104 MLDTQVMAGFVGLGISI-GFAKLALHYLEV---ELDKGASRTDWLSHPLSEIQLQYACAD 159

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
              +L ++  L   L           + +    +++              K+   E    
Sbjct: 160 VWYLLPIYHKLAEDLAK---TPWQTAVVEECATLLA--------------KRQIVEDPNK 202

Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665
                 N + L          +Q   IL    K+               ++ E+ +   N
Sbjct: 203 AYKEISNAWQL---------NQQELAILQILAKWRI-------------EEAEKRDLALN 240

Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711
            IIK      Q++K++  +   L   ++    R+H    L     G
Sbjct: 241 FIIKE-QSLLQIAKLQPKHTSILLEFMHPNEVRIHGKKILWLVEQG 285


>gi|170588753|ref|XP_001899138.1| 3'-5' exonuclease family protein [Brugia malayi]
 gi|158593351|gb|EDP31946.1| 3'-5' exonuclease family protein [Brugia malayi]
          Length = 573

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 454 KKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLD 497
           K+  E+E  +K+ H+ K    +L HRY I++R   D  +   +L 
Sbjct: 369 KEILESEKIIKVIHDAKRVATLLAHRYAINLRKIFDTQVAHAILQ 413


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|134106579|ref|XP_778300.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50261003|gb|EAL23653.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1323

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 73   RNEIYPDYK----ANRPKI--PEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            R EI  + +     NR  +   + +   +   ++   + FGIP I     EA+   A   
Sbjct: 919  RGEIDDEIRVLNSENRVAMRDSDEITQSMIAQIQTLLRHFGIPYITAP-MEAEAQCAKLA 977

Query: 126  YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
             +   +G    II+ D D+  L     C  +   + K         V ++  +  E+++ 
Sbjct: 978  QLGLVDG----IITDDSDVF-LFGGVQCFKNIFNDAKYAECFLLADVERELMLTRERLIS 1032

Query: 182  LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            L    G   D   G+PGIG      +L  +     +  
Sbjct: 1033 LAYFLG--SDYTLGLPGIGPVMGLEILANFPGERGLYD 1068


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +L       F + T  + A +     I ++ +        +    FID     SQ +   
Sbjct: 420 ELTDATYVVFDVETTGLSAVYDTI--IELAAVKMHKGNVIETFEQFIDPGHPLSQTTINL 477

Query: 443 NTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGF 486
             +T          +E+L   K+F  +E  + + HN  +D   L+    ++GI       
Sbjct: 478 TGITDEMVRGSKSEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++++K+
Sbjct: 536 IDTLELSRFLYPHFKSHRLNTLSKKF 561


>gi|301758368|ref|XP_002915044.1| PREDICTED: flap endonuclease GEN homolog 1-like [Ailuropoda
           melanoleuca]
          Length = 907

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLKE----CLDMLECLGIPWVQAAG-EAEAMCAYLNASGYVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L++
Sbjct: 212 KGVPGVGKEQALKLIR 227


>gi|281344218|gb|EFB19802.1| hypothetical protein PANDA_002978 [Ailuropoda melanoleuca]
          Length = 906

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLKE----CLDMLECLGIPWVQAAG-EAEAMCAYLNASGYVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L++
Sbjct: 212 KGVPGVGKEQALKLIR 227


>gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus]
 gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus]
          Length = 796

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 74/220 (33%), Gaps = 27/220 (12%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P K  L+ ++      + +     I     +   +++L      +  +   +   F   
Sbjct: 239 EPSKKALKSVEPQEPLDLESTPLDFIDKEDQVAPLLEELRQAKELAIDLEHHSYRTFQGF 298

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + IST                      ++D        +E L  L + F +   +K+
Sbjct: 299 TCLMQIST---------------------RTKDYIIDTLALREELHVLNEVFTDTKVVKV 337

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D   L R   + +    D    + VL+   S   +  + + +      E  K+ 
Sbjct: 338 LHGSISDIEWLQRDLALYVVNMFDTGEAAKVLE--FSRIGLQFLLKHY---CNIETDKAY 392

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           + +    +       E+A ++++ +L ++  +R +LI + 
Sbjct: 393 QLADWRIRPIPKNFIEYARKDTHYLLYIYDRMRNELIEKG 432


>gi|332841607|ref|XP_003314253.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
           [Pan troglodytes]
          Length = 1186

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 773 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 827

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 828 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 885

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 886 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 945

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 946 GSFLWGKPDLDKIREFCQRYF 966


>gi|315634066|ref|ZP_07889355.1| ribonuclease D [Aggregatibacter segnis ATCC 33393]
 gi|315477316|gb|EFU68059.1| ribonuclease D [Aggregatibacter segnis ATCC 33393]
          Length = 385

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 59/202 (29%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
                 +  I + + +    ++  T  + +       +   H K   I +   D+     
Sbjct: 8   CNTPPRFQLITDDQALFDVCEQARTQSAVALDTEFVRVRTLHPKLGLIQLYAGDEVALID 67

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
             +   F                              +E  LK+ H    D  V   Y  
Sbjct: 68  PTMIQDFSPFIA----------------------LLADESVLKVLHACGEDLEVFQHYFQ 105

Query: 482 SM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + +   D  +M+  L     S   A++ Q +      EI K    +  + +        
Sbjct: 106 QLPQPMCDTQVMANFL-GFAGSAGFATLVQHYFHI---EIDKGASRTDWLARPLSEIQLR 161

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L L++ ++ +L  
Sbjct: 162 YAAADVWYLLPLYVQMQTQLAQ 183


>gi|307177174|gb|EFN66407.1| Exosome component 10 [Camponotus floridanus]
          Length = 1189

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 80/226 (35%), Gaps = 32/226 (14%)

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
           +++   TP+   L++   +    + +  +  I    +I+  ++ L+     +  +   + 
Sbjct: 206 ELDKFDTPEC-QLKKSVPVQYKSLESTEFKLIEKPSEIKILLEDLKNQKEIAVDLEHHSY 264

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
             F      + IST++                      D        +  L  L + F  
Sbjct: 265 RTFQGITCLMQISTVNT---------------------DYLIDTLALRSELHQLNEIFTK 303

Query: 460 EHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
              LKI H    D L L R   + +    D    +  L+       +  ++  +L     
Sbjct: 304 PTILKIFHGADMDILWLQRDLSLYVVNMFDTHQAAKQLN-------LPYLSLAYLLNKYC 356

Query: 519 EILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            I  ++   +   +I     ++ ++A E+++ +L +  +L+ +LI 
Sbjct: 357 GINPNKHFQLADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIE 402


>gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91]
          Length = 346

 Score = 48.1 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGTSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
 gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
          Length = 1437

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 59/390 (15%), Positives = 137/390 (35%), Gaps = 64/390 (16%)

Query: 244 RKLVMLR-TDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT------------ 290
           R+L+ ++ TD   +  L+    ++ +      F   ++    I                 
Sbjct: 256 RQLLTMKVTDYTSSFILKKFSRDENDEE----FFANIKAGMWIRARGPVQQDDFLHDLTM 311

Query: 291 -TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN------S 343
             YD    + EP V D    E K + +       T   T+       Q S         +
Sbjct: 312 MAYDMQIVSHEPRV-DKYEGEQKRVELHAHSLMSTMDATNGIKDYVKQASDWGMDAIAIT 370

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV-----QKLETIGSASFKIITDT 398
           +    + F E     +   +      ++   +D +  +      +L       F + T  
Sbjct: 371 DTAGAQGFPEAASSAAANDVKMIYGVEVNLVEDGEPIIFNPAHVELADAEYVVFDVETTG 430

Query: 399 MDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
           + A + K I ++         I+   +  D  F +    +DL+   + D    +   KE+
Sbjct: 431 LSAAYDKVIELSAVKMVKGNVIAEFSEFIDPGFSLSQTTVDLT-SITDDMVRGSKSEKEV 489

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSH 503
            +  ++F+ +   + +GHN+ +D   ++    R+G+        D + ++  L     S+
Sbjct: 490 FTAFREFYGDA--ILVGHNVTFDMGFMNEGYERHGMGSITNPVIDTLTLARFLYPNMRSY 547

Query: 504 DIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQE-HAIENSNVILQLWLLLRPK 559
            + ++A+ +   L    + I  S +++  +++I   + +E + I +++        L   
Sbjct: 548 RLNTLAKHFGVLLEQHHRAIFDS-ETTGHLNRIFLEEARESYGITHAD-------QLNDH 599

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
           +             +P   VV     TG++
Sbjct: 600 MTDNDAWRHG----RPNHAVVLVQNQTGVK 625


>gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243]
 gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243]
          Length = 381

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGTSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|262394860|ref|YP_003286714.1| ribonuclease D [Vibrio sp. Ex25]
 gi|262338454|gb|ACY52249.1| ribonuclease D [Vibrio sp. Ex25]
          Length = 388

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 16/179 (8%)

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            +    + A  +  + +        D    ++ T +  L +    D    + +    L+ 
Sbjct: 27  DLEEVCIHAREADVVML--------DTEFVRIRTFYPQLGLIQLFDGNRLSLIDPTELTD 78

Query: 453 LKKF---FENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           +  F    ++   LK+ H    D  V    +G +     D  LM+  L     S   AS+
Sbjct: 79  MTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFASL 137

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            +++L     E+ KS   +  + +    +  ++A  + + +L L+  L  K+       
Sbjct: 138 VEEYLGV---ELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTQAGWWE 193


>gi|163803649|ref|ZP_02197513.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
 gi|159172559|gb|EDP57420.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
          Length = 372

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 6/167 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
             +  ++   LK+ H    D  V    +G +     D  LM+  L     S   A++ ++
Sbjct: 66  FVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATLVEE 124

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYE 570
           +L     E+ KS   +  + +    +  ++A  + + ++ L+  L  K+        V +
Sbjct: 125 YLGV---ELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNQAGWWEAVQQ 181

Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
             D  +   +  +    + +D     Q+       L  L    Y  +
Sbjct: 182 ESDLLVSKRIRDINDENVYLDIKGAWQLRPAELAILKPLATWRYREA 228


>gi|33187721|gb|AAP97715.1|AF462447_1 excision repair protein ERCC5 [Homo sapiens]
 gi|306742|gb|AAC37533.1| excision repair protein [Homo sapiens]
          Length = 1186

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 773 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 827

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 828 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 885

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 886 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 945

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 946 GSFLWGKPDLDKIREFCQRYF 966


>gi|205371791|sp|P28715|ERCC5_HUMAN RecName: Full=DNA repair protein complementing XP-G cells; AltName:
           Full=DNA excision repair protein ERCC-5; AltName:
           Full=Xeroderma pigmentosum group G-complementing protein
 gi|9587154|gb|AAF89179.1| xeroderma pigmentosum complementation group G protein splice
           variant [Homo sapiens]
 gi|55957424|emb|CAI14530.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 5 (xeroderma pigmentosum,
           complementation group G (Cockayne syndrome)) [Homo
           sapiens]
          Length = 1186

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 773 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 827

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 828 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 885

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 886 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 945

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 946 GSFLWGKPDLDKIREFCQRYF 966


>gi|323512350|gb|ADX87806.1| 5'-3' exonuclease [Vibrio phage ICP2_2006_A]
          Length = 283

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 19/192 (9%)

Query: 37  AIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEI-----YPDYKANRPKIPEML 91
           A++     +  +L +++ +       V+F      +R ++     YP YK NR  +    
Sbjct: 60  AVSRCEKFIQGILDDAQCDDY-----VLFIGGGNNYRYDLPHPKGYP-YKGNRTDMHTPF 113

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
                  +        P I   G+EADD          +    + +   DKD+  +    
Sbjct: 114 YLDE--CKNYLMECH-PTIVCDGYEADDGCGILMSGGMEGYDELLLCHIDKDMDMIEGNH 170

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
                 +  +            +   +   LQ L+GD+ DNIPG   +   T   L+   
Sbjct: 171 MRWSRNINGKDF-PAEFYTVNKVEALRHFYLQLLSGDTTDNIPGYYKL---TGKKLIAGI 226

Query: 212 GN-LENILINAS 222
            + LE++     
Sbjct: 227 KSGLESLTTELD 238


>gi|332253767|ref|XP_003276003.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Nomascus
           leucogenys]
 gi|332253769|ref|XP_003276004.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Nomascus
           leucogenys]
          Length = 907

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 21/137 (15%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT-IIS 139
           K  R     +L           +  GIP ++  G EA+ + A         G  V   ++
Sbjct: 104 KTGRSHFTSVLRE----CLHMLECLGIPWVQAAG-EAEAMCAYL-----NAGGHVNGCLT 153

Query: 140 TDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
            D D   L    T   +     K        +  +  K G+  + +V L  L G   D +
Sbjct: 154 NDGDTF-LYGAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLG--CDYL 210

Query: 194 P-GIPGIGYKTAALLLQ 209
           P G+PG+G + A  L+Q
Sbjct: 211 PKGVPGVGKEQALKLIQ 227


>gi|297274789|ref|XP_002800868.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 2
           [Macaca mulatta]
          Length = 1040

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 631 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 685

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 686 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 743

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 744 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 803

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 804 GSFLWGKPDLEKIREFCQRYF 824


>gi|170575788|ref|XP_001893385.1| 3'-5' exonuclease family protein [Brugia malayi]
 gi|158600662|gb|EDP37784.1| 3'-5' exonuclease family protein [Brugia malayi]
          Length = 847

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 457 FENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
           F + + LK+ H    D + L R +GI +    D      VL+   S      + Q   ++
Sbjct: 334 FTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDTYKAMRVLN--FSKFSYQHLVQTCCNH 391

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           T  +  K +K+   +  ++ +  + +A  +++ +L  +  LR +L+ ++
Sbjct: 392 TLDK--KFQKADWRLRPLTIAH-KTYARSDTHYLLHCYDQLRKRLLSQE 437


>gi|294950345|ref|XP_002786583.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239900875|gb|EER18379.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 387

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVL 496
           D+   +     ++  L     +   LK+ H+ + D   L H++GIS+    D    + +L
Sbjct: 68  DAFMFDACRPGVVQSLAPLLSDPSVLKVFHDCREDSSALYHQHGISLDCVFDTQ--ATML 125

Query: 497 DSGRSSH 503
              R  H
Sbjct: 126 VGNRMDH 132


>gi|60811379|gb|AAX36171.1| excision repair cross-complementing rodent repair deficiency
           complementation group 5 [synthetic construct]
          Length = 1187

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 773 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 827

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 828 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 885

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 886 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 945

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 946 GSFLWGKPDLDKIREFCQRYF 966


>gi|51988900|ref|NP_000114.2| DNA repair protein complementing XP-G cells [Homo sapiens]
 gi|21619256|gb|AAH31522.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 5 [Homo sapiens]
 gi|24079971|gb|AAN46091.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 5 [Homo sapiens]
 gi|61364768|gb|AAX42600.1| excision repair cross-complementing rodent repair deficiency
           complementation group 5 [synthetic construct]
 gi|123981830|gb|ABM82744.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 5 (xeroderma pigmentosum,
           complementation group G (Cockayne syndrome)) [synthetic
           construct]
 gi|123996661|gb|ABM85932.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 5 (xeroderma pigmentosum,
           complementation group G (Cockayne syndrome)) [synthetic
           construct]
          Length = 1186

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 773 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 827

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 828 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 885

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 886 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 945

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 946 GSFLWGKPDLDKIREFCQRYF 966


>gi|298111|emb|CAA49598.1| XP-G factor [Homo sapiens]
 gi|119629476|gb|EAX09071.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 5 (xeroderma pigmentosum,
           complementation group G (Cockayne syndrome)), isoform
           CRA_a [Homo sapiens]
          Length = 1186

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 773 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 827

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 828 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 885

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 886 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 945

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 946 GSFLWGKPDLDKIREFCQRYF 966


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ----- 437
           +L       F + T  + A ++    I +S +        +    FID     SQ     
Sbjct: 420 ELSEAIYVVFDVETTGLSAVYNSI--IELSAVKMHKGNIIESFEQFIDPGHPLSQTTINL 477

Query: 438 -----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGF 486
                +    +   +E+L+  K+F  +   + + HN  +D   L     ++ I       
Sbjct: 478 TGITDEMVHGSKSEEEVLTLFKEFAGD--HILVAHNASFDMGFLNTSNAKHNIPDATNPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D + +S  L     SH + ++A+K+
Sbjct: 536 IDTLELSRFLHPQYKSHRLNTLAKKY 561


>gi|90580077|ref|ZP_01235885.1| hypothetical ribonuclease D [Vibrio angustum S14]
 gi|90438962|gb|EAS64145.1| hypothetical ribonuclease D [Vibrio angustum S14]
          Length = 375

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 105/341 (30%), Gaps = 51/341 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  I  T+ +QQ      T  +             + +   I +   +Q          
Sbjct: 2   NFDIITTTEQLQQRCDSARTHTAVMLDTEFVRTRTLYPRLGLIQLFDGEQ---------- 51

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG 485
                        +  + L  E +  L     ++  +K+ H    D  V   + G     
Sbjct: 52  ------------LSLIDPLEVEDMEPLWALLRDQSVIKVLHACGEDLEVFQHHAGCLPTP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  LM+  L     S    ++ ++++     E+ K    +  + +    +  ++A  +
Sbjct: 100 MFDTQLMAAFL-GHGISTGFGTLVKEYVGV---ELDKGEARTNWLARPLTEKQLDYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQME--------ITGIQIDQDLLK 596
              +  L+  L  K+     +  + +  +  M   +  ++            Q++   L 
Sbjct: 156 VYYLKPLFESLLAKVEERGYMEALQQECESVMHRRIKPVDPEKAYLDIKNAWQLNPQQLA 215

Query: 597 QVSAEISKNLLSLE----------ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646
            +    +  +   +          + ++     +FN+ S   L    F     P   +  
Sbjct: 216 VLQKVAAWRVREAQKRDIALNFIVKELHLWKLARFNIKSRAGLEKEDFE----PMEIQRH 271

Query: 647 TGQWKTTAQDLEQINCGDNPI-IKNILEWRQLSKIKSTYAD 686
             +      D ++I   D P  I+ ++++    ++     D
Sbjct: 272 GNRLLKMVHDCDRIAAQDYPAKIERLVDFPHYKQMVKYIKD 312


>gi|297274787|ref|XP_001096257.2| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
           [Macaca mulatta]
          Length = 1182

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 773 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 827

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 828 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 885

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 886 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 945

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 946 GSFLWGKPDLEKIREFCQRYF 966


>gi|156973677|ref|YP_001444584.1| ribonuclease D [Vibrio harveyi ATCC BAA-1116]
 gi|156525271|gb|ABU70357.1| hypothetical protein VIBHAR_01380 [Vibrio harveyi ATCC BAA-1116]
          Length = 382

 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 83/259 (32%), Gaps = 28/259 (10%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           Y   + +Y  I   KD+++                   +  ++ +   I +    Q    
Sbjct: 6   YSEKHVNYQIITKNKDLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQ---- 61

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-Y 479
                     LS+    + T         ++   +  ++   LK+ H    D  V    +
Sbjct: 62  ----------LSLIDPTELTD--------MTSFVELLKDTSVLKVLHACGEDLEVFQNAF 103

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           G +     D  LM+  L     S   A++ +++L     E+ KS   +  + +    +  
Sbjct: 104 GCTPFPMVDTQLMAAFL-GHGLSTGFATLVEEYLGV---ELDKSESRTDWMARPLTQKQL 159

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
           ++A  + + ++ L+  L  K+        V +  D  +   +  +      +D     Q+
Sbjct: 160 DYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQESDLLVSKRIRNVNEENAYLDIKGAWQL 219

Query: 599 SAEISKNLLSLEENIYDLS 617
                  L  L    Y  +
Sbjct: 220 RPTELAILKPLATWRYREA 238


>gi|304392222|ref|ZP_07374164.1| 3'-5' exonuclease [Ahrensia sp. R2A130]
 gi|303296451|gb|EFL90809.1| 3'-5' exonuclease [Ahrensia sp. R2A130]
          Length = 211

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 62/201 (30%), Gaps = 24/201 (11%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
                        S +    T  +     +   + +S  D   D                
Sbjct: 13  HKNDLPDLSNYSDSVAIDTETLGLRPRRDRLCVVQLSPGDGTADV--------------- 57

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY 494
            Q   G+ +        ++K   + +  KI H  ++D  VL H +G          + S 
Sbjct: 58  VQIEKGQTSAPN-----IEKLLVDTNVQKIYHYGRFDIAVLYHAFGALSDNNFCTKIASR 112

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +  +    H + ++  + +     ++ K ++SS    +      Q +A  +   +  L  
Sbjct: 113 LTRTYTDRHGLKNLTHELIGV---DLSKVQQSSDWAAEELTKAQQAYAASDVLHLHALRD 169

Query: 555 LLRPKLIVEKLLHVYERLDKP 575
            L  +L  E   H+ +   K 
Sbjct: 170 ALLKRLAREDRQHLADECFKF 190


>gi|294141241|ref|YP_003557219.1| ribonuclease D [Shewanella violacea DSS12]
 gi|293327710|dbj|BAJ02441.1| ribonuclease D [Shewanella violacea DSS12]
          Length = 369

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 57/210 (27%), Gaps = 28/210 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  I +   +   V +                  +++    I             K   
Sbjct: 3   AFEYIEDDASLTALVSQYRQSDLLVLDTEFVRTRTYYANLGLI--------QAYDGKTLA 54

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
           +   ++++               LS             + H+   D  V  R G      
Sbjct: 55  LIDPVAINN--------------LSEFWSLLTEPGITTVLHSCSEDLEVFARNGACQPYN 100

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  + +  L         A + ++ L  +   + K    +  + +        +A  +
Sbjct: 101 LFDSQIAA-ALCGFGHGLGYAKLVEQTLDIS---LDKGESRTDWMKRPLSEAQLNYAAND 156

Query: 546 SNVILQLWLLLRPKLIVEK-LLHVYERLDK 574
              +  L+  L  KL  +  L  ++E  ++
Sbjct: 157 VYYLYNLYPQLLEKLQEQGRLAWLFEEGER 186


>gi|148909381|gb|ABR17789.1| unknown [Picea sitchensis]
          Length = 175

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + I    +  D +       + L+   +            ++   K   E+ +  K+ H+
Sbjct: 35  LVIGFDCEGVDLARYGRLCIMQLAFEDAVYLVDAVEGGHLLMQACKPALESVYVTKVVHD 94

Query: 469 IKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSS 502
            K D   L+ +YGI +    D  +   +++     
Sbjct: 95  CKRDSEALYFQYGIKLNNVVDTQIAYPLIEEQEGR 129


>gi|157825886|ref|YP_001493606.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799844|gb|ABV75098.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 78/213 (36%), Gaps = 27/213 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I + K ++++  +L      S     +    ++++      S +  K +    +    
Sbjct: 2   QIIDSQKTLEEFCNRLANKTCLSIDTEFERRYTYYAQL-----SIIQVKAEEYCGI---- 52

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFE 487
                         + L+   L+   K  E+ +  KI H  + D  + +    ++     
Sbjct: 53  -------------IDALSNLDLNVFNKLLEDNNITKIFHAPREDLEIFYNLFKTLPANVF 99

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + + +   G+       I  K +  T   I K+ + S  + +   S +  +A+ +  
Sbjct: 100 DIQIAANICGFGKQL-SYDDICYKLIGIT---IDKTHQKSNWLKRPITSDMLNYAMLDVK 155

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            + +++  L   +I   L + Y+     ++DV+
Sbjct: 156 YLYKIYQELNNIIIRNNLTNKYKTTLSSLLDVI 188


>gi|307688053|ref|ZP_07630499.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 33

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW 512
           + +RG   D ML SY+L+S    HD+ S+A++W
Sbjct: 1   MELRGIAFDTMLESYILNSVAGRHDMDSLAERW 33


>gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149]
 gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149]
          Length = 465

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 27/162 (16%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIA--------------ISTLDQKDDTSFKVETIF 428
           +L  +    F   T  +D    + + +                 TL     T     T  
Sbjct: 267 RLRDLTFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAV 326

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR------YGIS 482
             ++     D+ G +   +    +       EH + + HN  +D   L R      Y   
Sbjct: 327 HQINDAMVADAPGFDVACRAFHQF------AEHAVIVAHNAPFDMAFLRRQCRNQDYAFD 380

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
                D + +S V+  G + H + ++  +   +   ++  + 
Sbjct: 381 -NPVLDTVHLSAVVFGGSAEHTLDALCNRLNVHIPDDVRHTG 421


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 417 LAEETYVVFDVETTGLSAMYDTIIELAAVKVKGGEIIDRFESFANPHHPLSATTINLTGI 476

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDI 489
           + D         ++L    ++ +++  + + HN  +D   L+        G +     D 
Sbjct: 477 TDDMVQNAPEVGDVLKQFSEWMQDD--ILVAHNASFDMGFLNIGFQRIGLGKAKNPVIDT 534

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + +  +L     +H + ++ +K+
Sbjct: 535 LELGRLLFPSLKNHRLNTLCKKF 557


>gi|58258651|ref|XP_566738.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
            neoformans var. neoformans JEC21]
 gi|57222875|gb|AAW40919.1| single-stranded DNA specific endodeoxyribonuclease, putative
            [Cryptococcus neoformans var. neoformans JEC21]
          Length = 1323

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 73   RNEIYPDYK----ANRPKI--PEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125
            R EI  + +     NR  +   + +   +   ++   + FGIP I     EA+   A   
Sbjct: 919  RGEIDDEIRVLNSENRVAMRDSDEITQSMIAQIQTLLRHFGIPYITAP-MEAEAQCAKLA 977

Query: 126  YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181
             +   +G    II+ D D+  L     C  +   + K         V ++  +  E+++ 
Sbjct: 978  QLGLVDG----IITDDSDVF-LFGGVQCFKNIFNDAKYAECFLLADVERELMLTRERLIS 1032

Query: 182  LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            L    G   D   G+PGIG      +L  +     +  
Sbjct: 1033 LAYFLG--SDYTLGLPGIGPVMGLEILANFPGERGLYD 1068


>gi|28493361|ref|NP_787522.1| ribonuclease D [Tropheryma whipplei str. Twist]
 gi|28476402|gb|AAO44491.1| ribonuclease D [Tropheryma whipplei str. Twist]
          Length = 391

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 15/166 (9%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           + LS L     +E    + H    D   L R GI +    D  +   +L+      +++ 
Sbjct: 77  DNLSKLGDLIGSEEV--VIHAAINDIKSLKRVGIHITNLFDTEIACRLLN--IPKVNLSY 132

Query: 508 IAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           + +K+++   RKE      S+ P++K    +  E+A  +   +L L   L+  L  E  L
Sbjct: 133 VTEKFINVKLRKEYSTVNWSARPLNK----KYLEYAEGDVKHLLDLSQALKTALRAENKL 188

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            + +  +   + +V + +        D L +    +  ++      
Sbjct: 189 EIAKE-EFSHVFMVVKHQSE-----IDKLDKFCHGLEDDMQRAVAK 228


>gi|126725300|ref|ZP_01741142.1| ribonuclease D [Rhodobacterales bacterium HTCC2150]
 gi|126704504|gb|EBA03595.1| ribonuclease D [Rhodobacterales bacterium HTCC2150]
          Length = 385

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 68/198 (34%), Gaps = 26/198 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T+D+ ++  +       +          +++K   + ++     D  +  V+ +  
Sbjct: 3   TITTTEDLAEYCTQAAKFPYVTVDTEFLRERTYYAKLCLVQLAMPGDDDSNAVLVDPLAK 62

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
            LS                 L+ L   F +E+ +K+ H  + D  +     G+      D
Sbjct: 63  GLS-----------------LAPLYDLFRDENVVKVFHAARQDLEIFFVEEGVIPSPLFD 105

Query: 489 IMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE-HAIENS 546
             + + V     +  ++  ++ +K      +E +          +   S  Q+ +A+ + 
Sbjct: 106 TQVAAMVCGFGDQVGYE--TLVRK----IAREAVDKSSRFTDWSRRPLSDAQKTYALADV 159

Query: 547 NVILQLWLLLRPKLIVEK 564
             +  ++  L  +L   K
Sbjct: 160 THLRVVYEYLAKELEKSK 177


>gi|194378226|dbj|BAG57863.1| unnamed protein product [Homo sapiens]
          Length = 1018

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 605 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYRNFFN 659

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 660 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 717

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 718 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSK 777

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 778 GSFLWGKPDLDKIREFCQRYF 798


>gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 930

 Score = 47.7 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 18/139 (12%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVET-IFIDLSVHTSQDSTGK 442
                 +  + T  +D +    I I  +  +D ++   F+        L V   Q +  K
Sbjct: 1   MMFSFVALDLETTGLDCWSDDIIEIGMVKVIDGQERDFFQSLVRPGGPLPVKIKQLTGLK 60

Query: 443 NTLTKEILSYLKKFFEN---------EHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIML 491
           +   +        +F+               +GHNIK+D+  L    G  +     D + 
Sbjct: 61  DDDFQSA-----PWFQTIIPKILTFIGDLPLVGHNIKFDRDFLAAACGHQLPNDLYDTLE 115

Query: 492 MSYVLDSGRSSHDIASIAQ 510
           ++ +L     SH +  + +
Sbjct: 116 LARILQPSAPSHRLGELCK 134


>gi|221053197|ref|XP_002257973.1| DNA repair endonuclease [Plasmodium knowlesi strain H]
 gi|193807805|emb|CAQ38510.1| DNA repair endonuclease, putative [Plasmodium knowlesi strain H]
          Length = 1431

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 75   EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
            E+  +Y+  +    E+       +++    FGIP ++                       
Sbjct: 1084 ELVKEYRKLKKNNIEINEEMNEDIKILLNMFGIPYVQSPCEAEAQCSYLNCKNYCDA--- 1140

Query: 135  VTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
              IIS D D++     T       K+   E  + + +  K G+  ++++ L  L G   D
Sbjct: 1141 --IISDDSDVLVFNGKTVIKNFFNKKKTVEVYERKLIEDKLGLYQDELINLSLLCG--CD 1196

Query: 192  NIPGIPGIGYKTAALLLQEYGNLENI 217
               G+ G+G   A  +++ +   E++
Sbjct: 1197 YTIGVHGVGIVNALEIIKAFPTFEDL 1222


>gi|332242072|ref|XP_003270208.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
           [Nomascus leucogenys]
          Length = 1189

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 773 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 827

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 828 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 885

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 886 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAIAEAYLKPVVDDSK 945

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 946 GSFLWGKPDLDKIREFCQRYF 966


>gi|330813574|ref|YP_004357813.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486669|gb|AEA81074.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 205

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L K   + + LKI H  +++  +L  Y    +       + S +  +    H +  I ++
Sbjct: 66  LCKILNDNNILKIAHFARFEMGILKYYLNAKIENIYCTKIASKLGRTYTDKHGLYDITKE 125

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            L+ T   + KS++SS    K    + +++A  +   + +L   L   L  EK
Sbjct: 126 LLNIT---LNKSQQSSDWGLKDLSEEQKQYAALDVLYLHKLKEKLDLMLRREK 175


>gi|296536446|ref|ZP_06898543.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
 gi|296263225|gb|EFH09753.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
          Length = 394

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 71/206 (34%), Gaps = 29/206 (14%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T+ + +   +L T    +          +  +   + ++  +              
Sbjct: 14  LITTTEALAELCARLRTEPFVTVDTEFMRERTYWPELCVVQLAGAE-------------- 59

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYGISMRGFED 488
           D++V  +Q            L+ L +   +    K+ H  + D  + + R+G   R   D
Sbjct: 60  DVAVIDAQAEGLD-------LAPLGELLADPKVTKVFHAARQDVEICILRFGAPPRPLFD 112

Query: 489 IMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             + + V     ++S+D  S+ +        +I K+ + S    +        +A  +  
Sbjct: 113 TQIAAMVAGFGDQASYD--SLVRALAG---AQIDKAHRFSDWAARPLSPAQINYAAADVT 167

Query: 548 VILQLWLLLRPKLIVEK-LLHVYERL 572
            + +++  L  +L  E  L  V E +
Sbjct: 168 HLRRVYTALVERLTQEGRLSWVAEEM 193


>gi|163752438|ref|ZP_02159629.1| ribonuclease D [Shewanella benthica KT99]
 gi|161327662|gb|EDP98855.1| ribonuclease D [Shewanella benthica KT99]
          Length = 380

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 58/210 (27%), Gaps = 28/210 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  I +   +   V +                  F+++   I             K   
Sbjct: 11  AFEYIEDDASLTALVSQYRQSDLLVLDTEFVRTRTFYARLGLI--------QAYDGKTLA 62

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
           +   ++V+               LS             + H+   D  V  R G      
Sbjct: 63  LIDPVAVNN--------------LSEFWGLLAEPGITTVLHSCSEDLEVFARNGHCQPAN 108

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  + + +   G      A + ++ L  +   + K    +  + +        +A  +
Sbjct: 109 LFDSQIAAALCGLG-HGLGYAKLVEQTLDIS---LDKGESRTDWMKRPLSEAQLNYAAND 164

Query: 546 SNVILQLWLLLRPKLIVEK-LLHVYERLDK 574
              +  L+  L  KL  +  L  V E  ++
Sbjct: 165 VYYLYNLYPQLLEKLQQQGRLAWVIEEGER 194


>gi|296419821|ref|XP_002839490.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635651|emb|CAZ83681.1| unnamed protein product [Tuber melanosporum]
          Length = 838

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 85/225 (37%), Gaps = 28/225 (12%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398
           ++I S + P++++   ++ +     +    T +   + +Q+ ++ +      +  +    
Sbjct: 209 AEIESMEYPKEVYS-WMEPIPSRDWDEIPPTWVDTPRALQEMIKDMRRCTEIAVDLE--- 264

Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
                              D  ++   T  + LS     D        +  L  L + F 
Sbjct: 265 -----------------HHDTRTYIGLTCLMQLST-RDDDYIVDTLKLRGQLEPLNEIFT 306

Query: 459 NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           N   +K+ H    D + L R  G+ + G  D    +  L+   +   +A I +K++++  
Sbjct: 307 NPRVIKVLHGAFMDIIWLQRDLGLYIVGLFDTFYAAQALE--FARFGLAHILKKYVNF-- 362

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +  K  + +    +    ++ ++A  +++ +L  +  +R  L+ 
Sbjct: 363 -DADKQYQMADWRLRPLPKEMLDYARSDTHYLLYCFDCMRNSLVE 406


>gi|99034557|ref|ZP_01314528.1| hypothetical protein Wendoof_01000660 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 409

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 79/220 (35%), Gaps = 29/220 (13%)

Query: 365 NDSYTKIVNTKDIQQWVQKL--ETIGSASFKIITDTMD-AFHSKPIAIAISTLDQKDDTS 421
           N  Y  I  T +++   ++L  +     +        +  ++ K   I IS  ++     
Sbjct: 14  NKKYMLISTTSELENTCEELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEK----- 68

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDK-LVLHRY 479
                            S   +TL  EI LS++KK   N+   K+ H+ + D   +L  +
Sbjct: 69  -----------------SFIVDTLVPEIDLSFIKKIMLNQGITKVFHSCRQDIESLLTVF 111

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
                   D  + +            + + +++      +I    K+S  + +       
Sbjct: 112 KCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALDKI--KAKNSDWLRRPLSEDQL 169

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           ++A+ +   +  L+ +L  KL     +  ++   + ++D+
Sbjct: 170 DYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMESIVDI 209


>gi|118386483|ref|XP_001026360.1| XPG N-terminal domain containing protein [Tetrahymena thermophila]
 gi|89308127|gb|EAS06115.1| XPG N-terminal domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 1113

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148
           E +  +   VR     FG+P +E    EA+   A    I   +G    II+ D D+    
Sbjct: 749 ETIQDKFQQVRQLLLLFGVPWVEAPS-EAEAQCAFLEQIKLVDG----IITDDSDVFLFG 803

Query: 149 SPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
                     KE      I+ E + K+ G+  +K++ +    G   D   GI G+G   A
Sbjct: 804 GKNIYRGLFGKEADYVRYINGESIEKEMGVNRDKLIYMALFLG--SDYTLGIKGVGIVNA 861

Query: 205 ALLLQEYGNLENI 217
             +   + N++ +
Sbjct: 862 MEICTAFENIDAL 874


>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
          Length = 405

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 55/202 (27%), Gaps = 30/202 (14%)

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHT 435
            +        A   + T    A   +   I +  +     +++                 
Sbjct: 6   LLHPAIDTPLAFVDLETTGGSAVEHRITEIGVVVVSADHVSTWTTLVNPRQAIPPFIQQL 65

Query: 436 SQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDI 489
           +  +                 FE  +  L + HN  +D+  L     R G +        
Sbjct: 66  TGITDDMVRGAPTFADVASALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT 125

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + +S VL    S H + ++  +                           +  A+ ++++I
Sbjct: 126 VRLSRVLFPRESRHGLDALIARH--------------------ALTPSARHRALADADLI 165

Query: 550 LQLWLLLRPKLIVEKLLHVYER 571
            Q W  L   +  E L    ER
Sbjct: 166 WQFWQKLHDAIPGEHLREQIER 187


>gi|255732117|ref|XP_002550982.1| hypothetical protein CTRG_05280 [Candida tropicalis MYA-3404]
 gi|240131268|gb|EER30828.1| hypothetical protein CTRG_05280 [Candida tropicalis MYA-3404]
          Length = 678

 Score = 47.7 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 33/204 (16%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           +       GI  I    +EAD  +     I   +G    I+S D DL  L+     L   
Sbjct: 133 IMSELDIMGIKYIVAP-YEADPQMVYLEKIGLVDG----ILSEDSDL--LIFGCKKLITK 185

Query: 158 VKEEKIDIEHVIKKWG----------IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
           +K++    E   + +G          +  +++  +  L+G   D   GIPGIG   A  L
Sbjct: 186 LKDDGSCYEINRENFGKVRQIPYLNQLSNDQLRLVAMLSG--CDYTKGIPGIGLTKAFQL 243

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLS-----------RKLVMLRTDVPIT 256
            +++ NLE ILI   R   K    N  +  E A L+           ++L     + P  
Sbjct: 244 TRKHNNLEKILIAL-RSTGKSAPPNFRDEVELANLAFQFQKVFDPRTQELTT-LNEYPEG 301

Query: 257 IPLEHLILEDCNGPRLI-SFLKAL 279
           +  +   LE C G  L       L
Sbjct: 302 VEFDQETLERCCGRTLTPEIYSKL 325


>gi|147856691|emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera]
          Length = 951

 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 22/126 (17%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
           DSY  +     +++    L      +      ++ +F      I IST            
Sbjct: 111 DSYVWVETELQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQIST------------ 158

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMR 484
                     ++D         + L  L+  F N    K+ H    D L L R + I + 
Sbjct: 159 ---------QNEDYLVDTIALHDTLDVLQPVFANPSICKVFHGADNDVLWLQRDFHIXVV 209

Query: 485 GFEDIM 490
              D  
Sbjct: 210 NLFDTA 215


>gi|91228923|ref|ZP_01262822.1| ribonuclease D [Vibrio alginolyticus 12G01]
 gi|91187531|gb|EAS73864.1| ribonuclease D [Vibrio alginolyticus 12G01]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 16/179 (8%)

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            +      A  +  + +        D    ++ T +  L +    D    + +    L+ 
Sbjct: 24  DLEEVCTHAREADVVML--------DTEFVRIRTFYPQLGLIQLFDGNRLSLIDPTELTD 75

Query: 453 LKKF---FENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           +  F    ++   LK+ H    D  V    +G +     D  LM+  L     S   AS+
Sbjct: 76  MTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFASL 134

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            +++L     E+ KS   +  + +    +  ++A  + + +L L+  L  K+       
Sbjct: 135 VEEYLGV---ELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWE 190


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I +A         I+  D+  +    +     DL+  
Sbjct: 420 LHEATYVVFDVETTGLSAIYNDLIQVAASKMHKGNIIAEFDEFINPGHPISAFTTDLTG- 478

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
            + D        K++L   ++F ++   + + HN  +D   ++    R+G+    +   D
Sbjct: 479 ITDDHVRNAKPLKQVLEEFQEFCQDA--VLVAHNATFDVGFMNANYERHGLPKITQPVID 536

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 537 TLEFARNLYPEYKRHGLGPLTKRF 560


>gi|308482748|ref|XP_003103577.1| hypothetical protein CRE_28761 [Caenorhabditis remanei]
 gi|308259998|gb|EFP03951.1| hypothetical protein CRE_28761 [Caenorhabditis remanei]
          Length = 591

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 20/191 (10%)

Query: 409 IAISTLDQKDDTSFK-VETIFIDLSVHTSQDSTGKNTLTKEIL--SYLKKFFENEHFLKI 465
           I +S  +  D   F  +  +F  +   TSQ        +  I+  S  K   E+E  +K+
Sbjct: 333 IFLSLGELIDFRKFPKISHLFSGVIATTSQIGIFDLASSDVIILESGFKGILESEKVVKV 392

Query: 466 GHNIKYDKLVL-HRYGISMRGFEDIMLMSYVL--DS-GRSSHDIASIAQKWL-------S 514
            H+ +    +L H+Y + MR   D  +   +L  D  G+S H++  I+   L       S
Sbjct: 393 IHDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHDKFGKSLHEMRPISFINLQRVYYPQS 452

Query: 515 YTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVIL-QLWLLLRPKLIVEKLLHVYER 571
               ++   + S  P   +     + Q   +E ++ +L  L+  L   LI   L  ++E 
Sbjct: 453 IMLSDVTPRKMSQSPNWGVRPITEEFQLTIVEEAHCLLSALYQAL-SNLIPVHLRGLFED 511

Query: 572 --LDKPMIDVV 580
             ++    +V+
Sbjct: 512 KCIEVNHPEVL 522


>gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis
           MSMB43]
          Length = 379

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 56/198 (28%), Gaps = 30/198 (15%)

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHT 435
            +        A   + T    A   +   I +  ++    +++                 
Sbjct: 6   LLHPAIDTPLAFVDLETTGGSAAEHRITEIGVVVVNASHVSTWTTLVDPRQPIPPFIQQL 65

Query: 436 SQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDI 489
           +  +                 FE  +  L + HN  +D+  L     R G++        
Sbjct: 66  TGITDAMVRGAPTFADIASALFERLDGKLFVAHNASFDRGFLRAEFERAGVAFNPDVLCT 125

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + +S  L    S H + ++ ++                           +  A+ ++++I
Sbjct: 126 VRLSRALFPRESRHGLDALIERH--------------------ALAPSARHRALADADLI 165

Query: 550 LQLWLLLRPKLIVEKLLH 567
            Q W  L   +  E+L  
Sbjct: 166 WQFWQKLHDAIPAERLRE 183


>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
 gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           genitalium G37]
 gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 1451

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 70/221 (31%), Gaps = 28/221 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH-------- 434
           KL       F I T  +   +   I  +   +    +   +   + ID  +         
Sbjct: 410 KLSDATFVIFDIETTGLHGRYDDVIEFSARKIKNNSEIDHQQFFLKIDKPIPKTITEITK 469

Query: 435 TSQDSTGKNTLTKEILSYLKKFFEN---EHFLKIGHNIKYDKLVLHRYGISM--RGFEDI 489
            + +        ++ L  ++ + ++        I  ++ + +    +Y I        D 
Sbjct: 470 ITDEMLEGGIDQQQGLEKIRNYLDDCVMVAHNGINFDLPFLQTQFEKYNIKPLTNPLIDT 529

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + +S+ L+   SSH +++I                K  +  D     +  E+  E    +
Sbjct: 530 LCLSWALNPLFSSHTLSNICS--------------KLKLEFDDERLHRA-EYDTEALKKV 574

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590
              +     ++ +  L  + + L+K     + +   T   I
Sbjct: 575 FFYFKKQLKEMGINTLTEIDQNLNKKCQIDLMKRVFTNTAI 615


>gi|332242074|ref|XP_003270209.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 2
           [Nomascus leucogenys]
          Length = 1021

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 605 QELLRLFGIPYIQAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 659

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 660 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 717

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE +L  +    + ++   I       ++ +KL                      +    
Sbjct: 718 LEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAIAEAYLKPVVDDSK 777

Query: 260 EHLILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 778 GSFLWGKPDLDKIREFCQRYF 798


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 17/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVH 434
           LE      F + T      +   I +A         I T ++  +   K+    I+L+ H
Sbjct: 424 LEDATYIVFDVETTGFSNVYDTIIELAAVKIKNGQVIDTFERFSNPHRKLTAKIIELT-H 482

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHRYGISMRGFE-DI 489
            + D         +++     F  +     + HN  +D     +     GI +R    D 
Sbjct: 483 ITDDMLVNAPELSDVIREFHDFIGDGVV--VAHNAAFDLGFLYVAYKNAGIEVRHPGIDT 540

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + +S +++ G+ SH++ ++ +K+
Sbjct: 541 VELSRLVNPGQKSHNLKTLTKKY 563


>gi|28572529|ref|NP_789309.1| ribonuclease [Tropheryma whipplei TW08/27]
 gi|28410661|emb|CAD67047.1| putative ribonuclease [Tropheryma whipplei TW08/27]
          Length = 360

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 15/166 (9%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           + LS L     +E    + H    D   L R GI +    D  +   +L+      +++ 
Sbjct: 46  DNLSKLGDLIGSEEV--VIHAAINDIKSLKRVGIHITNLFDTEIACRLLN--IPKVNLSY 101

Query: 508 IAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           + +K+++   RKE      S+ P++K    +  E+A  +   +L L   L+  L  E  L
Sbjct: 102 VTEKFINVKLRKEYSTVNWSARPLNK----KYLEYAEGDVKHLLDLSQALKTALRAENKL 157

Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612
            + +  +   + +V + +        D L +    +  ++      
Sbjct: 158 EIAKE-EFSHVFMVVKHQSE-----IDKLDKFCHGLEDDMQRAVAK 197


>gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator]
          Length = 804

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 76/217 (35%), Gaps = 31/217 (14%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           +  L++   +    ++N  +  I    DI+  +  L+     +  +   +  +F      
Sbjct: 155 ECQLKKSIPVKYKSLDNTQFIYISTPSDIKIILDDLKRYNEIAVDLEHHSYRSFQGVTCL 214

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + IST+D                      D      + +  L  L + F     LK+ H 
Sbjct: 215 MQISTVDT---------------------DYLIDTLILRSELHQLNEIFTKPTILKVFHG 253

Query: 469 IKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
             +D   L R   + +    D    +  L+          ++  +L      I  ++   
Sbjct: 254 ADFDIQWLQRDLSLYVVNMFDTHQAAKQLN-------FPYLSLAFLLKKYCNINPNKHFQ 306

Query: 528 IPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +   +I     ++ ++A E+++ +L +  +L+ +LI 
Sbjct: 307 LADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIE 343


>gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956]
 gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 1447

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L+      F I T  + A + +   I +S +  +D         FID   H S+ +T   
Sbjct: 422 LKGQPYVIFDIETTGLSAIYDRI--IQVSAVKMQDGEVLDHFDQFIDPGFHLSEQTTALT 479

Query: 444 TLTKEILSYLK------KFFEN--EHFLKIGHNIKYDK----LVLHRYGISM--RGFEDI 489
           ++T +++   K      K F++  +  L  GHN+ +D     +   R+G+    +   D 
Sbjct: 480 SITDDMVQGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYERHGMGQIKQPVIDT 539

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L      + + ++++++
Sbjct: 540 LPLARFLHPDFRGYRLNTLSKRF 562


>gi|148226745|ref|NP_001081629.1| DNA repair protein complementing XP-G cells homolog [Xenopus
           laevis]
 gi|50416246|gb|AAH77363.1| XPGC protein [Xenopus laevis]
          Length = 1197

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 26/198 (13%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   Q FGIP I     EA+   A      +  G     I+ D D+    +         
Sbjct: 807 QELLQLFGIPYIVAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFS 861

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           +    E      +  + G+   K++ L  L G   D   GIP +GY +A  +L E+    
Sbjct: 862 QNKHVEYYQYADIHNQLGLDRSKLINLAYLLG--SDYTEGIPTVGYVSAMEILNEFPGQG 919

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE ++       + ++ + +       ++ +KL                      +    
Sbjct: 920 LEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKKLRLLELQQSFPNPAVASAYLKPVVDESK 979

Query: 260 EHLILEDCNGPRLISFLK 277
                   +  ++  F +
Sbjct: 980 SAFSWGRPDLEQIREFCE 997


>gi|329664332|ref|NP_001192379.1| flap endonuclease GEN homolog 1 [Bos taurus]
 gi|297480588|ref|XP_002691520.1| PREDICTED: flap structure-specific endonuclease-like [Bos taurus]
 gi|296482355|gb|DAA24470.1| flap structure-specific endonuclease-like [Bos taurus]
          Length = 906

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  R     +L           +  GIP ++  G EA+ + A        +G     ++ 
Sbjct: 104 KTGRSHFKSVLKE----CLDMLECLGIPWVQAAG-EAEAMCAYLNASGYVDG----CLTN 154

Query: 141 DKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
           D D   L    T   +     K        +  +  K G+  + +V L  L G   D +P
Sbjct: 155 DGDAF-LYGAQTVYRNFTMNTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLG--CDYLP 211

Query: 195 -GIPGIGYKTAALLLQ 209
            G+PG+G + A  L++
Sbjct: 212 KGVPGVGKEQALKLIK 227


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L+      F I T  + A + +   I +S +  +D         FID   H S+ +T   
Sbjct: 422 LKGQPYVIFDIETTGLSAIYDRI--IQVSAVKMQDGEVLDHFDQFIDPGFHLSEQTTALT 479

Query: 444 TLTKEILSYLK------KFFEN--EHFLKIGHNIKYDK----LVLHRYGISM--RGFEDI 489
           ++T +++   K      K F++  +  L  GHN+ +D     +   R+G+    +   D 
Sbjct: 480 SITDDMVQGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYERHGMGQIKQPVIDT 539

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L      + + ++++++
Sbjct: 540 LPLARFLHPDFRGYRLNTLSKRF 562


>gi|62088052|dbj|BAD92473.1| exosome component 10 isoform 2 variant [Homo sapiens]
          Length = 431

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 73/261 (27%), Gaps = 35/261 (13%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAANIEPVVLDINTTENKGIAIE--- 317
           L  ++   P+L    +          +   +   +A    P  L     E      E   
Sbjct: 174 LHAKNIIRPQLK--FREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLD 231

Query: 318 -----TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
                 +       +  +    +       +  TP    L++ Q     PI       I 
Sbjct: 232 VPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFIS 291

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
           +  ++ +  +KL      +  +                          SF   T  + +S
Sbjct: 292 SLDELVELNEKLLNCQEFAVDLE--------------------HHSYRSFLGLTCLMQIS 331

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIML 491
             T +D        +  +  L +   +   +K+ H    D   L + +G+ +    D   
Sbjct: 332 TRT-EDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 390

Query: 492 MSYVLDSGRSSHDIASIAQKW 512
            + +L+     H +  + + +
Sbjct: 391 AARLLN--LGRHSLDHLLKLY 409


>gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
 gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
          Length = 1439

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 87/237 (36%), Gaps = 43/237 (18%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L+      F   T  + A + +   I +S +  ++         FID   H S+ +T   
Sbjct: 415 LKDATYVVFDTETTGLSAIYDRV--IELSAVKMQNSNVIDQFEEFIDPGFHLSERTTNLT 472

Query: 444 TLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGI-SMRG-FE 487
           ++T          +E+    ++F  +   + +GHN+ +D   ++    R+G+  M+    
Sbjct: 473 SITDEMVHGSKSEEEVFKLFREFCGDA--IVVGHNVTFDMGFMNTGYVRHGMHEMQNPII 530

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK-------------------WLSYTRKEILKSRKSSI 528
           D + ++  L      + + ++A+K                    L+Y   +  + R   +
Sbjct: 531 DTLTLARFLYPNLRGYRLNTLAKKFDVSLEHHHRAIYDAETTGHLNYLFLKDAEDRYGIV 590

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             D+++D      A  ++        +L  K     L ++++ +    +    ++  
Sbjct: 591 YHDQLNDHMTDNDAYRHARP---SHAILLAKTQA-GLKNMFKIVSLSNVKYFYRVPR 643


>gi|321251586|ref|XP_003192115.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
            gattii WM276]
 gi|317458583|gb|ADV20328.1| Single-stranded DNA specific endodeoxyribonuclease, putative
            [Cryptococcus gattii WM276]
          Length = 1263

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            ++   + FGIP I     EA+   A    +   +G    II+ D D+  L     C  + 
Sbjct: 891  IQTLLRHFGIPYITAP-MEAEAQCAKLAQLGLVDG----IITDDSDVF-LFGGVQCFKNI 944

Query: 158  VKEEKIDI----EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
              + K         V ++  +  E+++ L    G   D   G+PGIG      +L  +  
Sbjct: 945  FNDAKYAECFLLADVERELMLTRERLISLAYFLG--SDYTLGLPGIGPVMGLEILANFPG 1002

Query: 214  LENILI 219
               +  
Sbjct: 1003 ERGLYD 1008


>gi|212635098|ref|YP_002311623.1| ribonuclease D [Shewanella piezotolerans WP3]
 gi|212556582|gb|ACJ29036.1| Ribonuclease D [Shewanella piezotolerans WP3]
          Length = 369

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 28/210 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  I +   +   V +                  ++++   I             K   
Sbjct: 3   AFQYIDDDTSLAALVAQYREAKLLVIDTEFVRTRTYYARLGLI--------QAYDGKTLA 54

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
           +   L+V                LS       +   +K+ H+   D  V  + G      
Sbjct: 55  LIDPLAVTN--------------LSLFWALLTDSSIIKLLHSCSEDLEVFAKNGACQPNK 100

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  + + +   G      A + ++ L  T   + K    +  + +        +A  +
Sbjct: 101 LFDSQIAAGLCGMGYGL-GYAKLVEQTLDIT---LDKGESRTDWLKRPLSEAQLNYAAND 156

Query: 546 SNVILQLWLLLRPKLIVEK-LLHVYERLDK 574
              + +L+  L  KL  +  L  VYE  ++
Sbjct: 157 VYYLYELYPQLVDKLESQGRLDWVYEDGER 186


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
          Length = 1447

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L+      F I T  + A + +   I +S +  +D         FID   H S+ +T   
Sbjct: 422 LKGQPYVIFDIETTGLSAIYDRI--IQVSAVKMQDGEVLDHFDQFIDPGFHLSEQTTALT 479

Query: 444 TLTKEILSYLK------KFFEN--EHFLKIGHNIKYDK----LVLHRYGISM--RGFEDI 489
           ++T +++   K      K F++  +  L  GHN+ +D     +   R+G+    +   D 
Sbjct: 480 SITDDMVQGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYERHGMGQIKQPVIDT 539

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L      + + ++++++
Sbjct: 540 LPLARFLHPDFRGYRLNTLSKRF 562


>gi|267421|sp|P14629|ERCC5_XENLA RecName: Full=DNA repair protein complementing XP-G cells homolog;
           AltName: Full=Xeroderma pigmentosum group
           G-complementing protein homolog
 gi|312433|emb|CAA49597.1| XP-G related factor [Xenopus laevis]
          Length = 1196

 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 26/198 (13%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   Q FGIP I     EA+   A      +  G     I+ D D+    +         
Sbjct: 806 QELLQLFGIPYIVAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFS 860

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           +    E      +  + G+   K++ L  L G   D   GIP +GY +A  +L E+    
Sbjct: 861 QNKHVEYYQYADIHNQLGLDRSKLINLAYLLG--SDYTEGIPTVGYVSAMEILNEFPGQG 918

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE ++       + ++ + +       ++ +KL                      +    
Sbjct: 919 LEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKKLRLLDLQQSFPNPAVASAYLKPVVDESK 978

Query: 260 EHLILEDCNGPRLISFLK 277
                   +  ++  F +
Sbjct: 979 SAFSWGRPDLEQIREFCE 996


>gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW]
 gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW]
          Length = 699

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHS-KPIAIA--------ISTLDQKDDTSFKVETIFID-LSV 433
           L ++    F   T  ++     + +A+A        I T +           I     ++
Sbjct: 501 LRSLSYVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAI 560

Query: 434 HTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRG-FE 487
           H   D+        E +L   + F  +   + + HN  +D   L       G+   G   
Sbjct: 561 HGITDAMVAEAPRAEAVLPPFRAFVGDA--VLVAHNAAFDLKFLRLKQRAAGVRFDGPVL 618

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK 511
           D M++S  +      H +  +A +
Sbjct: 619 DTMILSRQIQGDHGEHSLDGLAAR 642


>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
 gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
          Length = 1369

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 18/163 (11%)

Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD-- 418
           Y +++D Y  IV  +  + +           F + T  +       I IA   +  K   
Sbjct: 333 YLVDDDQY--IVTGEQNESF-----EGEFVFFDLETTGLIPGKDNIIEIAAVKIKNKHIV 385

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTK---EILSYLKKFFE-NEHFLKIGHNIKYDK- 473
           DT  K+      +    +  +   N + +   E  + +K F E     + + HN K+D  
Sbjct: 386 DTFSKIVNPHRPIPPFITNLTGITNQMVEDGEEEEAAVKAFCEFCGDLILVAHNAKFDMG 445

Query: 474 ---LVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW 512
              + L+ + +     + D + MS  L    + H++  +A  +
Sbjct: 446 FMEIALNAHHLENNITYIDTLAMSRTLIPTINKHNLKKLASYF 488


>gi|269967938|ref|ZP_06181978.1| ribonuclease D [Vibrio alginolyticus 40B]
 gi|269827461|gb|EEZ81755.1| ribonuclease D [Vibrio alginolyticus 40B]
          Length = 388

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 16/179 (8%)

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            +      A  +  + +        D    ++ T +  L +    D    + +    L+ 
Sbjct: 27  DLEEVCTHAREADVVML--------DTEFVRIRTFYPQLGLIQLFDGNRLSLIDPTELTD 78

Query: 453 LKKF---FENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           +  F    ++   LK+ H    D  V    +G +     D  LM+  L     S   AS+
Sbjct: 79  MTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFASL 137

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            +++L     E+ KS   +  + +    +  ++A  + + +L L+  L  K+       
Sbjct: 138 VEEYLGV---ELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWE 193


>gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 550

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 69/182 (37%), Gaps = 13/182 (7%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIA-IST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
                SF    + + A + K   ++  +  L+     SF   T  + +S           
Sbjct: 251 AETKCSFITTLEELAALNEKLCQLSEFAVDLEHHSYRSFLGITCLMQISTREEDFIIDTL 310

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSS 502
            L  E+   L + F +   +K+ H    D   L R +G+ +    D    S  L+   + 
Sbjct: 311 ELRSEMY-ILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVRLFDTHQASRALN--LAR 367

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKL 560
           H +  +   + +     +   ++  +   +I     ++ ++A  +++ +L ++  +R +L
Sbjct: 368 HSLDHLLTHFCN-----VASDKRYQLADWRIRPLPEEMVQYARADTHYLLYIYDCVRAQL 422

Query: 561 IV 562
           + 
Sbjct: 423 LD 424


>gi|254508462|ref|ZP_05120581.1| ribonuclease D [Vibrio parahaemolyticus 16]
 gi|219548574|gb|EED25580.1| ribonuclease D [Vibrio parahaemolyticus 16]
          Length = 386

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 27/203 (13%)

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L           +Y  + +   ++Q  QK   +              F+ +   I +   
Sbjct: 5   LDWYQPQSERLVNYQIVTDNALLKQVCQKAREVDVVMLDTEFVRTRTFYPQLGLIQL--- 61

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
                                 Q S    T   E ++   +  ++   LK+ H    D  
Sbjct: 62  ------------------FDGEQLSLIDPTELDE-MTPFVELLQDTSVLKVLHACGEDLE 102

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G       D  +M+  L     S   AS+ + +L     E+ KS   +  + + 
Sbjct: 103 VFQNSFGCLPYPMVDTQVMAAFL-GHGLSTGFASLVEHYLQV---ELDKSESRTDWLARP 158

Query: 534 SDSQVQEHAIENSNVILQLWLLL 556
              +  ++A  +   +L L+  L
Sbjct: 159 LTDKQLDYAAADVFYLLPLYEKL 181


>gi|149196457|ref|ZP_01873512.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155]
 gi|149140718|gb|EDM29116.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155]
          Length = 372

 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 12/172 (6%)

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS-----YLKKFFENEHFLK 464
           A+S  D   DT F     F  +       S G+  L   ++       LK+  E+    K
Sbjct: 17  ALSEKDIALDTEFVWTKTFHPIPGLLQIKSAGEIHLIDLLIENFPKEILKELLESRDVCK 76

Query: 465 IGHNIKYDKLVLHRY-GISMRGFEDIMLM-SYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           I H+   D  +   +     +   D  L  ++     +      S+A+  L     EI K
Sbjct: 77  ILHSPDQDLKLFKLFCDAEAKNIFDTQLAYAFTGAPKQV-----SLAKLCLEMMDIEISK 131

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
           +++ S    +        +A E+   ++++   LR KL        +   +K
Sbjct: 132 TQQVSDWTKRPLKDSQLNYAAEDVRYLIEITETLREKLKENGRYDWFLEENK 183


>gi|307206657|gb|EFN84629.1| DNA-repair protein complementing XP-G cells [Harpegnathos saltator]
          Length = 1139

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 27/207 (13%)

Query: 81  KANRPKIPEMLLPQLPL-VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIS 139
           K  R      +  Q+ +  +   + FGIP +     EA+   A    I   +G     I+
Sbjct: 752 KLERQAT--NISEQIRIEAQELLRLFGIPYVVAP-MEAEAQCAYLEQIKLTDGT----IT 804

Query: 140 TDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196
            D D+              ++ + ++     +   + +   +++ L  L G   D   G+
Sbjct: 805 DDSDIWLFGGRCVYKNFFNNSKRVQQFRACDIQHHFKLTRNQLIQLALLVG--SDYTTGV 862

Query: 197 PGIGYKTAALLLQEYGNL-ENILINASR----IKQKKR----RENILEYAETARL----- 242
            GIG  TA  +L  +    +N+L         IK+ K     +  +       +L     
Sbjct: 863 AGIGPVTALEILAAFPAEGDNVLHGLHNFCTWIKKGKIAAPGKTGLRNKLRNVKLDKDFP 922

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNG 269
           S+ +V       I    E       N 
Sbjct: 923 SQAVVQAYLFPTIDESKETFTWGKPNA 949


>gi|300723126|ref|YP_003712424.1| RNase D, processes tRNA [Xenorhabdus nematophila ATCC 19061]
 gi|297629641|emb|CBJ90244.1| RNase D, processes tRNA precursor [Xenorhabdus nematophila ATCC
           19061]
          Length = 379

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 68/224 (30%), Gaps = 33/224 (14%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           N +Y  +     +Q   ++ +     +          ++ +   I +   +Q        
Sbjct: 3   NCNYQLVTTDAQLQSVCEQAKKHARIALDTEFVRTRTYYPQLGLIQLFDGEQLS------ 56

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISM 483
             +   L +   Q               LK    +   LK+ H    D  V    +    
Sbjct: 57  --LIDPLEISQWQP--------------LKALLVDPDVLKLIHAGSEDLEVFGNSFQCLP 100

Query: 484 RGFEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
               D   L +++      S   A++  ++L     E+ KS   +  + +    +  E+A
Sbjct: 101 TPMIDTQVLAAFIGHPI--SCGFATLVAEYLHV---ELDKSESRTDWLARPLSRKQCEYA 155

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
             +   +L L  +L  K         Y    K   D+++Q    
Sbjct: 156 AADVYYLLPLADILLKKTEQAG----YFDAAKDESDLIAQRRKE 195


>gi|289743269|gb|ADD20382.1| putative salivary expressed 3'-5' exonuclease [Glossina morsitans
           morsitans]
          Length = 339

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 78/213 (36%), Gaps = 13/213 (6%)

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD-AFHSKPIAI 409
           +++R+++  Q   N   Y  +      + +  +++    A    I    +   H K +  
Sbjct: 21  YMKRVEENEQMQRNEIQYECV-----SKIYQNRIDERAKACVDTINTLREHCRHYKVLGF 75

Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
               +        +     + L+         +      I   LK    ++  +K+G + 
Sbjct: 76  DCEWITVGR---VRNPVALLQLASPNGFCGLFRLRHMHHIPESLKNLLRDKEIIKVGVDP 132

Query: 470 KYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
             D   L   YGI +    DI  ++ ++        +  +++  L+    +     +S+ 
Sbjct: 133 AGDARKLQEDYGIYVASTFDIRYLAVMIR--CKPLGLEKLSRSLLNVDFVKRGYIGRSNW 190

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
             DK+ D QV E+A  ++   ++++  L  +L 
Sbjct: 191 EFDKLDDDQV-EYAANDAFAGVEIFKHLANRLK 222


>gi|114562909|ref|YP_750422.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
 gi|114334202|gb|ABI71584.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
          Length = 370

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 65/207 (31%), Gaps = 29/207 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  I +   +   V++ +                +++K   I             K   
Sbjct: 3   TFEYISDDASLLSLVEQYQQSTLLVLDTEFVRTRTYYAKLGLI--------QAYDGKTLA 54

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
           +   +++                LS   +   +++ +K+ H+   D  V   YG      
Sbjct: 55  LIDPVAITD--------------LSPFWQLLTDQNIVKLVHSCSEDLEVFAHYGECQPSP 100

Query: 486 FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  + +    S     H +   A+   +  + EI K    +  +++       ++A  
Sbjct: 101 LFDSQIAA----SFAGLGHGLGY-AKLVDACLQVEIDKGESRTDWMNRPLSDAQLQYAAN 155

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYER 571
           +   + QL+  L+ KL  +  +     
Sbjct: 156 DVFYLYQLYPQLQQKLAADNRVEWLFE 182


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
          Length = 1395

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSV 433
           +L       F + T  + A ++  I ++         I + +Q  D    +    I+L+ 
Sbjct: 420 ELTDATYVVFDVETTGLSAVYNSIIELSAVKMHKGNIIESFEQFIDPGHPLSQTTINLTG 479

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM--RGFE 487
            T +   G  +  +E+L+  K+F  +   + + HN  +D   L     ++ I        
Sbjct: 480 ITDEMVQGSKS-EEEVLTLFKEFAGD--SILVAHNASFDMGFLNTSNAKHNIPDAENPVI 536

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + +S  L     SH + ++A+K+
Sbjct: 537 DTLELSRFLHPQFKSHRLNTLAKKY 561


>gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 700

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 25/172 (14%)

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIG--SASFKIITDTMDAFHSKPIAIAISTLDQ 416
               +    +T +     ++  + +L      + +F + +     +      + +ST   
Sbjct: 225 WDSSMRKSEWTLVDTPSKMRACISELSQSPPLALAFDVESYNKSKYTQLTCLLQLSTDHG 284

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY-DKLV 475
                  +  +   L+    ++  G           L   F +   +K+GH+I   D   
Sbjct: 285 -------MAYVIDPLAPGVFEEVGG-----------LAPIFADPDIVKVGHSIGGLDVRS 326

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
           LHR +GI +    D    + VL     SH +A++ + +      ++ KS K+
Sbjct: 327 LHRDFGIFVINAFDTYEAAKVL--CLESHGLAAVCEHY-GMKYTDLYKSLKN 375


>gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786]
          Length = 408

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 55/202 (27%), Gaps = 30/202 (14%)

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHT 435
            +        A   + T    A   +   I +  +     +++                 
Sbjct: 6   LLHPAIDAPLAFVDLETTGGSAVEHRITEIGVVVVSADHVSTWTTLVNPRQAIPPFIQQL 65

Query: 436 SQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDI 489
           +  +                 FE  +  L + HN  +D+  L     R G +        
Sbjct: 66  TGITDDMVRGAPTFADVASALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCT 125

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + +S VL    S H + ++  +                           +  A+ ++++I
Sbjct: 126 VRLSRVLFPRESRHGLDALIARH--------------------ALTPSARHRALADADLI 165

Query: 550 LQLWLLLRPKLIVEKLLHVYER 571
            Q W  L   +  E L    ER
Sbjct: 166 WQFWQKLHDAIPGEHLREQIER 187


>gi|253989912|ref|YP_003041268.1| ribonuclease D [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638250|emb|CAR66874.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781362|emb|CAQ84524.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica]
          Length = 375

 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +QQ  ++ +     +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITTDAQLQQVCERAKEYAKIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLNIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         ++   N   LK  H    D  V    +      
Sbjct: 62  NWQP----------------------FRELITNPQILKFLHAGSEDLEVFLNAFQCLPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L +++      S   A++  +++     E+ KS   +  + +    +  E+A  
Sbjct: 100 MIDTQVLAAFIGHP--LSCGFAALVAEYIHV---ELDKSESRTDWLARPLSEKQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L L  +L
Sbjct: 155 DVYYLLPLADIL 166


>gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1]
 gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens
           MI-1]
          Length = 930

 Score = 47.0 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 21/140 (15%)

Query: 390 ASFKIITDTMDAFHSKPIAI------------AISTLDQKDDTSFKVETIFIDLSVHTSQ 437
            +  + T  +D    + I I            + STL +              +  H  Q
Sbjct: 5   VALDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDHELQ 64

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--RGFEDIMLMSYV 495
           D+     +   IL ++           +GHN+K+D   L     S       D + +S  
Sbjct: 65  DAPKLQEVLPVILQFIADL------PLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKY 118

Query: 496 LDSGRSSHDIASIAQKWLSY 515
           L  G S+H +  +   +L  
Sbjct: 119 LMPGASNHRLGYLCS-YLGI 137


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score = 47.0 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVET-IFIDLSV------HT 435
           L       F + T  + A +   I +A +   D +    F+        LS         
Sbjct: 416 LPESTYIVFDVETTGLSANYDTIIELAAVKVFDGEIIDRFERFANPHHPLSATTINLTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDI 489
           + D         E+++  KK+ E+   + + HN  +D   L     R G+        D 
Sbjct: 476 TDDMVKDAPEVSEVVTDFKKWAEDG--ILVAHNASFDMGFLNISYQRAGLKKASNPVIDT 533

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++A+K
Sbjct: 534 LELARFLYPSMKNHRLNTLAKK 555


>gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36]
 gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis
           SK36]
          Length = 1462

 Score = 47.0 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 64/168 (38%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+   ++   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKIIQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|327310721|ref|YP_004337618.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
 gi|326947200|gb|AEA12306.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
          Length = 346

 Score = 47.0 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 22/135 (16%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT------T 152
           +    A GIP ++    E +   A         G      S D D +   +P        
Sbjct: 140 KALLTAMGIPWVQAPS-EGEAQAAYMAARGSVWGAG----SQDYDSLLFGAPRLVRNLAV 194

Query: 153 CLYDTVKEEKID-IEHVIKKWGI-------PPEKMVCLQALTGDSIDNIP-GIPGIGYKT 203
                V EE ++    VI+   +         E++V +  L G   D  P G+PG+G + 
Sbjct: 195 SSRRKVGEEYVEVPPEVIELDKVLKALKLKSREQLVDIAILLG--TDYNPDGVPGVGPQK 252

Query: 204 AALLLQEYGNLENIL 218
           A  ++ E G+LEN L
Sbjct: 253 ALKIILEQGSLENAL 267


>gi|13358436|ref|NP_078767.1| Putative XPG/RAD2-type nuclease [Lymphocystis disease virus 1]
          Length = 333

 Score = 47.0 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
            + +    A G   +   G EA+             GFA  I+S D D++   +      
Sbjct: 155 DIFKQLITAVGFVYVMAPG-EAELCGVKLV----ATGFADAIVSFDSDIIAAAAYHRVSS 209

Query: 156 DTVKEE-----KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
                      +++I+  +   G+  E+ +    L G   D   GIP +G   A   ++ 
Sbjct: 210 VYTNISSSAIIELNIDLTLDILGLTHEQFLDFCILCG--TDFNTGIPKLGPIKAYEAIKT 267

Query: 211 YGNLENI 217
           Y  LEN+
Sbjct: 268 YKTLENM 274


>gi|330796677|ref|XP_003286392.1| hypothetical protein DICPUDRAFT_150348 [Dictyostelium purpureum]
 gi|325083664|gb|EGC37111.1| hypothetical protein DICPUDRAFT_150348 [Dictyostelium purpureum]
          Length = 916

 Score = 47.0 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 108/318 (33%), Gaps = 60/318 (18%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD--- 66
           +DG S++++   A         G+P N   G+ N     ++  +   +     VIFD   
Sbjct: 29  IDGYSWLHKG--AYSCSQELVLGIPTN---GYINYFLNRIKMLQNYKVIP--VVIFDGGP 81

Query: 67  ----YPAVTFRNEIYPDYK-----------------ANRPKIPEMLLPQLPLVRLATQAF 105
                     R +   +YK                   +  +         L++   +  
Sbjct: 82  LPNKKGKEQERFQHREEYKSKGKAFLLEGNKSQANICFQKAVDITPRLAFNLIKE-LRKH 140

Query: 106 GIPAIEIQGFEAD------------DIIATYTYIAEKEGFAVTIISTDKD-LMQLVSPTT 152
            I  +    +EAD            D I T        G +  I+  DKD   Q     T
Sbjct: 141 KIEYLVAP-YEADAQLTFLSITGQVDAIITEDSDLVAYGASNLILKMDKDGYAQ--EIKT 197

Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
               + K++  D              +  +  L+G   D +P +PG+G KT+  LL+++ 
Sbjct: 198 EDLGSCKKDGYDFIDF------TQTMLRQMCILSG--CDYLPSLPGMGLKTSFKLLKQHR 249

Query: 213 NLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL 272
           ++E +     R K    +E   ++ +     R     R   P+T  +  L   D + P  
Sbjct: 250 DIEKVFKYLKREKPGFTKEYEQQFYKADFTFRH---QRVYDPVTKSITTLFPLDKDYPED 306

Query: 273 -ISFLKALEFTKLINRVA 289
            I F+  L    +  R+A
Sbjct: 307 EIDFIGPLIEDSIAERIA 324


>gi|195501501|ref|XP_002097822.1| GE26425 [Drosophila yakuba]
 gi|194183923|gb|EDW97534.1| GE26425 [Drosophila yakuba]
          Length = 900

 Score = 47.0 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 80/219 (36%), Gaps = 27/219 (12%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P    L++ + +    + N     +   + ++Q +++L      +  +   +   F    
Sbjct: 250 PAADQLQKQKPVLPALMANTELMVVDTVEKLEQALEELRQAPQIAIDVEHHSYRTF---- 305

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             + I+ L Q                   S+D      + ++ +  L     +   LKI 
Sbjct: 306 --MGITCLVQMST---------------RSKDYIFDTLILRDEMHILNLVLTDPKKLKIL 348

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D   L R   + +    D    +  L+  R S  +A + + +L     ++ KS +
Sbjct: 349 HGADLDIEWLQRDLSLYIVNMFDTHRAAKALNLARLS--LAYLLKHYLDL---DVDKSLQ 403

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +    +    Q+ ++A ++++ ++ ++  +   L+ + 
Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLQQH 442


>gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio]
          Length = 500

 Score = 47.0 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 73/210 (34%), Gaps = 31/210 (14%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           + +     PI+      I   +D+    +KL      +  +   +  +F      + IST
Sbjct: 272 KPEVQMYKPIDETPCQFISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQIST 331

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +                     +D        +  +  L + F +   +K+ H    D 
Sbjct: 332 RE---------------------EDFIIDTLELRSEMYILNETFTDPAIVKVFHGADSDI 370

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
             L + +G+ +    D    +  L+ GR+S D        L     ++   ++  +   +
Sbjct: 371 EWLQKDFGLYVVNMFDTHHAARCLNLGRNSLD-------HLLKVYCDVSSDKRYQLADWR 423

Query: 533 I--SDSQVQEHAIENSNVILQLWLLLRPKL 560
           I     ++ ++A  +++ +L ++  +R  L
Sbjct: 424 IRPLPDEMLKYAQADTHYLLYVYDRVRADL 453


>gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio]
          Length = 899

 Score = 47.0 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 73/210 (34%), Gaps = 31/210 (14%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           + +     PI+      I   +D+    +KL      +  +   +  +F      + IST
Sbjct: 272 KPEVQMYKPIDETPCQFISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQIST 331

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +                     +D        +  +  L + F +   +K+ H    D 
Sbjct: 332 RE---------------------EDFIIDTLELRSEMYILNETFTDPAIVKVFHGADSDI 370

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
             L + +G+ +    D    +  L+ GR+S D        L     ++   ++  +   +
Sbjct: 371 EWLQKDFGLYVVNMFDTHHAARCLNLGRNSLD-------HLLKVYCDVSSDKRYQLADWR 423

Query: 533 I--SDSQVQEHAIENSNVILQLWLLLRPKL 560
           I     ++ ++A  +++ +L ++  +R  L
Sbjct: 424 IRPLPDEMLKYAQADTHYLLYVYDRVRADL 453


>gi|117530351|ref|YP_851194.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
 gi|117165963|dbj|BAF36271.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
          Length = 427

 Score = 47.0 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 122/325 (37%), Gaps = 61/325 (18%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIML------MSYVLDSGRSS-H 503
            ++  + +    K+  N +++ LV    +G+        M+       +    +GR+  +
Sbjct: 85  EIRDIWLDSSVRKVCFNARFEALVTQATWGVWPDNLYCAMVLFQQIGAATGFKAGRTRGY 144

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV---------ILQLWL 554
              S+ +  L      + K   SS    +++ +Q+ ++A  +            +L+ + 
Sbjct: 145 SYGSLVRDILDTP---LNKELASSDWSGELTPAQL-QYAALDVGAPRNSNYTSLLLEAYA 200

Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD----LLKQVSAEISKNLLSLE 610
           LLR +L+    +   E +D+     +++ME  G+ I+ +     L    +E+    L + 
Sbjct: 201 LLRNELLYTYEMPQVEEIDQAAFMEIARMEWNGLPINMNVMGSFLSTAQSELDNYKLRMS 260

Query: 611 ENIYDLSGEKFNLSS---------PKQLGDIL------------FTKLKFPSGAK----- 644
            +      +  + +S         P ++  +L            F  +K  +  +     
Sbjct: 261 AHFDFSVDQVVDWNSGVPQVTLVVPDKITALLNNPTALVSRIQEFLPVKLDNLQQKTLET 320

Query: 645 -------TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697
                     G  +  A   E I      +I ++L +++L+K+ ST   +    IN RT 
Sbjct: 321 VLRELDSEDDGDGEDGATSEESIRDLGIQVISDLLRYKKLTKMVST---NWAALINPRTG 377

Query: 698 RVHTFYSLASTMTGRLASLEPNLQN 722
            VH  Y    T TGR++S      N
Sbjct: 378 NVHARYQTIGTSTGRMSSSSSGDTN 402


>gi|134045325|ref|YP_001096811.1| flap endonuclease-1 [Methanococcus maripaludis C5]
 gi|132662950|gb|ABO34596.1| flap endonuclease 1 [Methanococcus maripaludis C5]
          Length = 324

 Score = 47.0 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 32/184 (17%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  GIP I     E +   A           A  +IS D D +   +       T 
Sbjct: 136 KKLLELMGIPYINAPS-EGEAQCAELVK----SNDAFCVISQDYDSILYGAENVVKNITS 190

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQEYGNL 214
                E I++E  + +  +  ++++ +  L G   D  P G+ G G K A          
Sbjct: 191 SNKDIELIELEKTLSELNVSLDQLIDVAILIG--TDYNPGGLKGFGPKKA---------- 238

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274
                    +K+ K  EN +   E    +   +    D P         L+      L  
Sbjct: 239 ------IDTVKKGKM-ENYISEIE----NYSEIRKIFDEPNVTSEYDTKLKTPKKEELAE 287

Query: 275 FLKA 278
           FL  
Sbjct: 288 FLIE 291


>gi|299742372|ref|XP_001832419.2| hypothetical protein CC1G_07679 [Coprinopsis cinerea okayama7#130]
 gi|298405154|gb|EAU89453.2| hypothetical protein CC1G_07679 [Coprinopsis cinerea okayama7#130]
          Length = 516

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 8/151 (5%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +A G+P I+       + +A+   +     F   ++S D D++   +P      ++
Sbjct: 315 KDIIRAMGVPIIDAPLETEGEGLASSIVLHGDADF---VVSEDTDVLVYGAPLLRNLTSM 371

Query: 159 KE--EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
            E  E I  + + +   + P   +    L G   D    I  +G   A   ++ YG++EN
Sbjct: 372 HEPLEIICSQTIRQCLELDPVSFLDFALLLG--TDFTQRIKNVGPARALQFVKRYGSIEN 429

Query: 217 ILINASRIKQK-KRRENILEYAETARLSRKL 246
            +    +   +   RE + E  +   L + L
Sbjct: 430 AIQAEPKYPPRIPPREYLAEVNDARDLFKNL 460


>gi|260556877|ref|ZP_05829094.1| 3'-5' exonuclease [Acinetobacter baumannii ATCC 19606]
 gi|260409483|gb|EEX02784.1| 3'-5' exonuclease [Acinetobacter baumannii ATCC 19606]
          Length = 213

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 23/146 (15%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYT---KIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           +     L++       P  N +Y     I N++  +   ++L       F     +   F
Sbjct: 2   SEASALLDKTSIQQLPPFENLNYQNIVVIENSEQCKTIEEELRAATFLGFDSE--SKPTF 59

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               +    ST       + + +     ++  T              L +L+    N   
Sbjct: 60  QVGEV----STGPHLIQLATEHKAYLFHVNSST--------------LKFLQPILSNPKQ 101

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFED 488
           +K+G  +K DK + H+ GI +    D
Sbjct: 102 IKVGFGLKNDKHIFHKKGIELESCVD 127


>gi|242045348|ref|XP_002460545.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
 gi|241923922|gb|EER97066.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
          Length = 590

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 15/150 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                +  G+P +  +G EA+            EG     I+ D D   L    T +   
Sbjct: 132 CVELLEYLGMPVLRAKG-EAE----ALCAQLNNEGHVDACITADSDAF-LFGAKTVVKVF 185

Query: 158 VKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                   E   I  +    G+  ++MV +  L G   D + G+PG G +TA   +Q + 
Sbjct: 186 RSNCKEPFECYHIADIESGLGLKRKQMVAMALLIGSDHD-LHGVPGFGLETALRFVQLF- 243

Query: 213 NLENILINASRIKQKKRRENILEYAETARL 242
           + + IL     I +       LE  + A +
Sbjct: 244 DEDEILDKLHEIGRGVYP--FLEGFDNAHI 271


>gi|94497624|ref|ZP_01304192.1| ribonuclease D [Sphingomonas sp. SKA58]
 gi|94422841|gb|EAT07874.1| ribonuclease D [Sphingomonas sp. SKA58]
          Length = 412

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 73/217 (33%), Gaps = 25/217 (11%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P      R    ++   +   +  I ++K +  +  ++      +        +++    
Sbjct: 7   PFDQPAGRGPAHNKIEDHMQIHPLITDSKTLSDFCARIANSPYVAVDTEFMRENSYWPDL 66

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             + ++  D  +  +   +   IDL+                    L    +NE  LK+ 
Sbjct: 67  CLVQVA--DSHEAAAIDPKAPGIDLTP------------------LLNLLVDNEDVLKVF 106

Query: 467 HNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D  ++H   G +     D  + +  L  G       ++   WL     ++ K  +
Sbjct: 107 HAGGQDIEIVHNLTGKAPHPMFDTQIAAMALGFGEQI-GYGNLVDAWLGV---QLDKGAR 162

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +    +  D +  ++AI +   +++++  +  +L  
Sbjct: 163 FTDWARRPLDKRQIDYAIGDVTYLIKIFPKMLEELKK 199


>gi|241670620|ref|XP_002399861.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215506210|gb|EEC15704.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 853

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVL---DSGRSSHDIAS 507
            LK   E++  +K+ H+ + D   L +++GI ++   D       L   D G+  H + +
Sbjct: 594 KLKDILESQTIVKVVHDCRNDSAALFYQFGIRLQNVFDTQAAHATLQQQDQGKPVHKVKN 653

Query: 508 IAQKWL 513
           ++   L
Sbjct: 654 VSLGTL 659


>gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
 gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
          Length = 484

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 66/206 (32%), Gaps = 31/206 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFID------LSVHTS 436
           L  +  A F   T  +       + I A+  L+ +     ++ T+          S    
Sbjct: 272 LNQLCFAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVH 331

Query: 437 QDSTGKNTLTKEILSYLKKF-FENEHFLKIGHNIKYDKLVLHRY----GISM-RGFEDIM 490
             ST       +I     +F       + + HN  +D   L R+    G++      D +
Sbjct: 332 GVSTAMVQGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTV 391

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           L+S VL      H + ++ ++                  +D      ++  A+ ++    
Sbjct: 392 LLSAVLFGASVPHTLDALCER------------------LDITIPPALRHTALGDAQATA 433

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPM 576
              + + P L       + + +++  
Sbjct: 434 CALVQMIPMLQARGFNSLLQVIEQTQ 459


>gi|168005501|ref|XP_001755449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693577|gb|EDQ79929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 824

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 27/193 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +     ++  V  L+        I    + +F      I IST                 
Sbjct: 69  VQTRSQLEALVDVLKGEKEIGVDIEHHHVRSFRGFIPLIQIST----------------- 111

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                S D         + +  L   F N   LKI H    D L L R + I +    D 
Sbjct: 112 ----YSTDYLVDAIALHDDMHLLHPIFANPAILKIFHGADNDSLWLQRDFHIYIVNLFDT 167

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
                VL  G+    +A + Q +   + K+I    + S    +   ++++ +A  +++ +
Sbjct: 168 ARACDVL--GKPQRSLAYLLQLYCGVSTKKIY---QRSDWRVRPLPAEMEIYARTDAHYL 222

Query: 550 LQLWLLLRPKLIV 562
           L +   +R  L+ 
Sbjct: 223 LYIAQCMRANLVQ 235


>gi|262370710|ref|ZP_06064035.1| 3'-5' exonuclease [Acinetobacter johnsonii SH046]
 gi|262314510|gb|EEY95552.1| 3'-5' exonuclease [Acinetobacter johnsonii SH046]
          Length = 221

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETI--FIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
           +A  ++   IAI   D +   +F+V  +     L    S +      +   I ++L  F 
Sbjct: 39  EAIRAELEQIAIFGFDSESKPTFQVGEVSTGPHLIQLASVEHAYLFQMNPPIWNFLTPFL 98

Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
            N   LK+G  +K D  +  + G  ++G 
Sbjct: 99  ANPDQLKVGFGLKNDAHLFRKKGFELKGV 127


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 27/223 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSVHTSQ-- 437
           ++L       F + T  + A ++  I + A+   D +    F         LSV T +  
Sbjct: 412 RRLSDETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPHHPLSVTTMELT 471

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR------YGISMRGFE 487
               +        +E+L     +  +       HN  +D   L+        G  +    
Sbjct: 472 GITDEMVKDAPDVEEVLRRFIDWVGDSTLA--AHNASFDIGFLNAGLAKMGLGKVINPVI 529

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D + ++  L     +H + ++ +K+      E+ +          I D++   H +    
Sbjct: 530 DTLELARFLYPDLKNHRLNTLCKKF----DIELTQ------HHRAIYDAEATGHLLMRLL 579

Query: 548 VILQLWLLLR-PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +   +L   +L          RL +P    +     TG++
Sbjct: 580 KEAEERGILYHDELNSRTHSEASYRLSRPFHVTLLAQNETGLK 622


>gi|331219848|ref|XP_003322600.1| DNA-repair protein rad2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309301590|gb|EFP78181.1| DNA-repair protein rad2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 459

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 34/214 (15%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT-IIS 139
           K +R +  ++        R      GIP +     EA+   A         G  V    S
Sbjct: 189 KLSR-RTVKVTREHNEECRRLLTLMGIPWVVAPS-EAEAQCAELCR-----GGLVYGAGS 241

Query: 140 TDKDLMQLVSPTTCLYDTVKEEK------IDIEHVIKKWGIPPEK-----------MVCL 182
            D D +   +P    + T  E +      +++E V+    +  E+            +  
Sbjct: 242 EDMDTLTFGTPILLRHLTFSEARKMPILTVNLEKVLSGLELTMEQVLQLILQWHHNFIEF 301

Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242
             L G   D +  + G+  KTA  L+ E+G+LE ++ +     +    E+       A  
Sbjct: 302 CVLCG--CDYVDPLKGVAAKTAHKLMMEHGSLEKVVEHLRESSKNPPPEDWPWEEARALF 359

Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            +  V   +++ +         +  +   L+ FL
Sbjct: 360 QKPEVTPSSELKLE-------WKKPDVEGLVDFL 386


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 1442

 Score = 47.0 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 27/223 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSVHTSQ-- 437
           ++L       F + T  + A ++  I + A+   D +    F         LSV T +  
Sbjct: 420 RRLSDETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPHHPLSVTTMELT 479

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR------YGISMRGFE 487
               +        +E+L     +  +       HN  +D   L+        G  +    
Sbjct: 480 GITDEMVKDAPDVEEVLRRFIDWVGDSTLA--AHNASFDIGFLNAGLAKMGLGKVINPVI 537

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D + ++  L     +H + ++ +K+      E+ +          I D++   H +    
Sbjct: 538 DTLELARFLYPDLKNHRLNTLCKKF----DIELTQ------HHRAIYDAEATGHLLMRLL 587

Query: 548 VILQLWLLLR-PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +   +L   +L          RL +P    +     TG++
Sbjct: 588 KEAEERGILYHDELNSRTHSEASYRLSRPFHVTLLAQNETGLK 630


>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 1493

 Score = 47.0 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 115/309 (37%), Gaps = 40/309 (12%)

Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
           ++I+  +  ++    K IAI   I+  T      F    ++  KIN +   ++  L+ + 
Sbjct: 360 SSIQEYLQMVDKWNWKAIAITDHINVQT------FPDAYNELKKIN-KNKAEEDKLKLIY 412

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
            L    I  + Y  + N K      QK+       F + T  +    ++ I       D 
Sbjct: 413 GLEMNMIEKEDYWIVKNPKG-----QKIRESKMVVFDLETTGLSPEFNEIIEFGAVVFDP 467

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN--------EHFLKIGHN 468
               + K + +F        Q +     +T E+L   K   ++        +  + + HN
Sbjct: 468 VTGKTTKYDYLFKP-KQPLKQFTIDLTNITPEMLEDKKNIDDDFDKIYELIKDSILVAHN 526

Query: 469 IKYDKLVL----HRYGI-SMRG-FEDIMLMSYVLDSGRSSHDIASIAQK----WLSY--T 516
             +D   L     R G   ++    D + +S ++     SH + ++ +K    +  +   
Sbjct: 527 ANFDFNFLNSLSKRLGYGDLQNTVIDTLTLSRLVRPALKSHRLGAVCKKFGILYDEHVAH 586

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
           R +      + +    I++ ++    I ++++I      L P+   + +  +  R     
Sbjct: 587 RGDYDADVLNDLFFKIIAELKLTTPIIYDADLI-----KLEPENDKDNINLL--RSRGAH 639

Query: 577 IDVVSQMEI 585
           ++V+++ + 
Sbjct: 640 VNVLAKNQQ 648


>gi|222445719|ref|ZP_03608234.1| hypothetical protein METSMIALI_01361 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435284|gb|EEE42449.1| hypothetical protein METSMIALI_01361 [Methanobrevibacter smithii
           DSM 2375]
          Length = 187

 Score = 47.0 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---- 160
            GIP IE  G E +   A       + G A  + S D D +   +        +      
Sbjct: 2   MGIPYIEAYG-EGEAQAAYLV----ENGDAWAVASQDYDCLLFGAKRVVRNLAINSNLGN 56

Query: 161 -EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
            E  +++ V+ +  I  E+++ +  L G   D   G+ G+G KTA  L ++ G LEN L 
Sbjct: 57  LEYYNLKRVLDELDINREQLIDMGILIG--TDFSEGLKGVGAKTALKLAKK-GELENKLA 113

Query: 220 NASR 223
               
Sbjct: 114 KLQE 117


>gi|170041796|ref|XP_001848636.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167865395|gb|EDS28778.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 724

 Score = 47.0 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 20/150 (13%)

Query: 78  PDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTI 137
           P+ K NR          L        + G+  ++  G EA+ + A         G    I
Sbjct: 124 PEQKRNR------FHHVLKQCEELLSSMGLVCVQAPG-EAEALCAHLNRENLVHG----I 172

Query: 138 ISTDKDLMQLVSPTTCL-----YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDN 192
           IS D D                 +    E  D+E++ +   +  EK+V +  L+G   D 
Sbjct: 173 ISQDSDCFAYGGVRVYRNFCASQNGGSVEIYDLENIRRVMDLGQEKIVVMGILSG--CDY 230

Query: 193 IP-GIPGIGYKTAALLLQEYGNLENILINA 221
            P G+PG+G +    L++ Y + E IL   
Sbjct: 231 SPAGVPGVGRELVHRLIRSYPSWE-ILDRI 259


>gi|241895006|ref|ZP_04782302.1| hypothetical protein HMPREF0877_0276 [Weissella paramesenteroides
           ATCC 33313]
 gi|241871724|gb|EER75475.1| hypothetical protein HMPREF0877_0276 [Weissella paramesenteroides
           ATCC 33313]
          Length = 325

 Score = 47.0 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 62/216 (28%), Gaps = 37/216 (17%)

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791
             R   ++P  ++ ++ D    E R LA +A    L       L        E  G ++ 
Sbjct: 100 WCRNYLVAPTGRRFVALDIGSAEPRALAGVADDEKLRMAISEGLY-------ESVGNSLL 152

Query: 792 KVS--PQMRRHAKTINFSIIYGISPFRLATQL---RIPRSEAADYIKRYFHRFPGIHEYI 846
           + +     R+  K +    +YG S   +A  L    +    A          FP     +
Sbjct: 153 EHTGIIIPRKIVKRLFMGFLYGQSLTGVAATLAEISLDTGYAHHIFYELQGLFPKSTSLL 212

Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906
           EK             +    +         S  R    R+ +       A+ I    +  
Sbjct: 213 EKVSK----------MQVAFLQGQPSMIDVSDKRPNQRRSYL-------ASSIIAALVKR 255

Query: 907 VHKSLEDHKLATKMLLQIH----DELVFEVPEEEIT 938
               L +          +H    D L   +PE E  
Sbjct: 256 WATRLIELNPEI----WVHEIPRDALWLSIPESETD 287


>gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia]
          Length = 676

 Score = 47.0 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 80/205 (39%), Gaps = 12/205 (5%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L+     S+   T  I LS  +         L K++   L   F N   +K+ H  + D 
Sbjct: 224 LEHNHQISYLGITCLIQLSTRSQDYIIDPFPLWKQLGDMLSVIFANPKIVKVFHGAENDV 283

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
             L R +G+ +    D    S  L   ++S     +++    Y +K   K+ +++    +
Sbjct: 284 QWLQRDFGLYIVNLFDTFHASKELQLMQNSFQFL-LSE----YCKKSTDKTYQTADWTQR 338

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID----VVSQMEITGI 588
               ++ ++A  +++ +L ++  +R  L   KL    + +          V+ + + T +
Sbjct: 339 PLPDEMIKYAQIDTHYLLYIYDRMRQDLK--KLNKPNDNISNIPNYYLEAVLKRSKETAL 396

Query: 589 QIDQDLLKQVSAEISKNLLSLEENI 613
           +I +  L+     +   L   +  +
Sbjct: 397 KIYKKPLQDQDQSLQTILNKQDRRM 421


>gi|171186427|ref|YP_001795346.1| flap endonuclease-1 [Thermoproteus neutrophilus V24Sta]
 gi|226700955|sp|B1YC46|FEN_THENV RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|170935639|gb|ACB40900.1| XPG I domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 349

 Score = 47.0 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 83/251 (33%), Gaps = 61/251 (24%)

Query: 16  IYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASHFAVIFD 66
            Y A Y      R+ DG P         + ++G F   +  +    +          +FD
Sbjct: 32  AYNALYQFLASIRQPDGTPLMDRQGRVTSHLSGLFYRTINLMEAGIKPVY-------VFD 84

Query: 67  YPAVTFR------------NEIYPDYKANRPKIPEMLL-----------PQLPLVRLATQ 103
                F+              +    KA R    + +              +   +    
Sbjct: 85  GKPPEFKLAEIEARRRVKEKAMEEVVKAIREGKRDDVAKYMKRVIFLTNEMVEDAKRLLT 144

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK- 162
             G+P ++    E +   A         G    + S D D +   SP       V  ++ 
Sbjct: 145 YMGVPWVQAPS-EGEAQAAHMAKR----GHCWAVGSQDYDSLLFGSPRLVRNLAVSPKRR 199

Query: 163 ------------IDIEHVIKKWGIP-PEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL 208
                       ++++ V+K   +   E+++ +  L G   D  P G+PG+G + A  L+
Sbjct: 200 SGEEVVEVSPEVVELDSVLKALKLKGREQLIDVAILLG--TDYNPDGVPGVGPQKALKLV 257

Query: 209 QEYGNLENILI 219
            E+G+LE +L 
Sbjct: 258 LEFGSLEKMLD 268


>gi|303390841|ref|XP_003073651.1| Rad2 [Encephalitozoon intestinalis ATCC 50506]
 gi|303302798|gb|ADM12291.1| Rad2 [Encephalitozoon intestinalis ATCC 50506]
          Length = 558

 Score = 47.0 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 24/165 (14%)

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
           L++   + F I  +E    EAD            +G    +I+ D D++ L   T     
Sbjct: 387 LIKDILEVFNISYVEAPS-EADAQCGFMCRNNTVDG----VITEDNDVL-LYGGTVYRNF 440

Query: 157 TVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE--- 210
             ++   EK  +E + K+  +  + ++ L  L G   D   G+ GIG   A   +++   
Sbjct: 441 FRRDRGIEKYSLERIKKELNLDRKNLIELSYLLG--SDYTLGVKGIGPVKALEAVRKGSV 498

Query: 211 ----YGNLENILINASRIKQK------KRRENILEYAETARLSRK 245
                G L  + +N   I  K        ++ I  + E   LS++
Sbjct: 499 REEDIGMLVGLYLNPVAIDMKDILIPVVDKDKIRMFYEKKGLSKE 543


>gi|221053416|ref|XP_002258082.1| exonuclease [Plasmodium knowlesi strain H]
 gi|193807915|emb|CAQ38619.1| exonuclease, putative [Plasmodium knowlesi strain H]
          Length = 414

 Score = 47.0 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 67/203 (33%), Gaps = 18/203 (8%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             + N K+     +++      +       +  +  K   + + T ++            
Sbjct: 84  KIVENEKEGNDAAEEINRNDIIAVDFEGTNLGKY-GKVCIMQVYTEERTPGGVHPKSECL 142

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
                 + +     + L   ++  +KK  EN+  LK+ H+ + D   L+   GI      
Sbjct: 143 ------SREKYYIFDLLKMSVIKSVKKIIENKKTLKLVHDCREDSSALYNQLGIKFENVY 196

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE------- 540
           D      +L     + DI  ++   L      I     SSI  +   + ++ E       
Sbjct: 197 DTSRAHMLLMEKNRNSDIYQVSFLQLLNDYLGIKDDCLSSIKKEMYKNEKIWEVRPLSKM 256

Query: 541 ---HAIENSNVILQLWLLLRPKL 560
              +A++N   +  L+ +    L
Sbjct: 257 SIIYALKNVKYLFPLYRIFDNML 279


>gi|62421219|gb|AAX82339.1| DNA repair protein RAD2 [Orange-spotted grouper iridovirus]
          Length = 298

 Score = 47.0 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 79  DYKANRPKI-----PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           DY  +R +      PE        +R     FG+P       E +     +       G 
Sbjct: 138 DYVEHRVRTHQAVTPED----YDRMRAILTGFGVPY-TFARTEGE----MHCVQMVANGQ 188

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           A  +++ D D + + +  +  Y           ++ +  V++K  + P + +    L G 
Sbjct: 189 ADLVMTIDTDAILVSALHSVPYVLTNFKAGCFRQVSVHEVLEKCHMTPAQFLDFCILLG- 247

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENI 217
             D    I GIG+  A  L++ +G+++N+
Sbjct: 248 -TDFNKHIRGIGHVKAQNLIKTHGSIDNM 275


>gi|290475404|ref|YP_003468292.1| RNase D, processes tRNA [Xenorhabdus bovienii SS-2004]
 gi|289174725|emb|CBJ81524.1| RNase D, processes tRNA precursor [Xenorhabdus bovienii SS-2004]
          Length = 385

 Score = 47.0 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 61/200 (30%), Gaps = 29/200 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I +   +Q   ++ +   + +          ++ +   I +   +Q          
Sbjct: 12  NYQLITSDAQLQSICERAKKHATIALDTEFVRTRTYYPQLGLIQLFDGEQ---------- 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
               LS+    D +             ++   +   LK  H    D  V    +      
Sbjct: 62  ----LSLIDPLDISEWQP--------FRELLTDRDVLKFIHAGSEDLEVFWNSFQCLPTP 109

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L +++      S   A++  ++L     E+ KS   +  + +    +  E+A  
Sbjct: 110 MIDTQVLAAFIGHP--MSCGFATLVAQYLHV---ELDKSESRTDWLARPLSEKQCEYAAA 164

Query: 545 NSNVILQLWLLLRPKLIVEK 564
           +   +L L  +L        
Sbjct: 165 DVYYLLPLADILMAATEQAG 184


>gi|195154607|ref|XP_002018213.1| GL17589 [Drosophila persimilis]
 gi|194114009|gb|EDW36052.1| GL17589 [Drosophila persimilis]
          Length = 831

 Score = 47.0 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 11/130 (8%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY- 452
            +TD +  + +K   I +S   +  +   K E   I++     +           +++  
Sbjct: 551 FVTDILLKYAAKNEGIVVSLDCEGINLGLKGEITLIEIGTARGEAFLFDVQSCPAMVTDG 610

Query: 453 -LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL---DSGRSSH---- 503
            LK   E+E  +K+ H+ + D   +  ++GI +R   D      +L   ++G+  +    
Sbjct: 611 GLKTVLEHEQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKY 670

Query: 504 -DIASIAQKW 512
             + S+ +++
Sbjct: 671 ISLNSLCEQY 680


>gi|152978783|ref|YP_001344412.1| ribonuclease D [Actinobacillus succinogenes 130Z]
 gi|150840506|gb|ABR74477.1| ribonuclease D [Actinobacillus succinogenes 130Z]
          Length = 383

 Score = 47.0 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 65/201 (32%), Gaps = 29/201 (14%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           N   +  I     ++   ++ +   + +       + +++ K   I +   ++       
Sbjct: 7   NLPQFNLITTNSGLKTVCEQAQQKSAVALDTEFIRIRSYYPKLGLIQLYDGERVSLIDPT 66

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483
             T F   +                          + + +K+ H    D  V   Y   +
Sbjct: 67  TITDFSPFTA----------------------LLADINVIKVLHACYEDLEVFSHYFQQL 104

Query: 484 -RGFEDIMLMS-YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
                D  +M+ ++     +   +AS+ + +L+    EI K    +  + +    +  ++
Sbjct: 105 PEPIMDTQVMAGFLAFPHST--GLASLIRHYLAL---EIDKGASRTDWLARPLSEKQLQY 159

Query: 542 AIENSNVILQLWLLLRPKLIV 562
           A  +   +L L+  +  +L  
Sbjct: 160 AAADVWYLLPLYEKMAVELAK 180


>gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
 gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
          Length = 279

 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 77/214 (35%), Gaps = 31/214 (14%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFIDLSVHT---- 435
           V+ +      +F + T  +D  +++ I I A+   D K    F       +L        
Sbjct: 31  VRTIMLKSYIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELISPAITGL 90

Query: 436 ---SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMR--GF 486
              S D        + +++    F E E  L IGHNI +D         R G+     G 
Sbjct: 91  TGISNDMVASARPARSVITDFIDFCE-EDIL-IGHNIIFDYSFTKCTAAREGLPFEKMGI 148

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----HA 542
           + + +   V      S  ++++ + +      +I          D ++ +++ +    + 
Sbjct: 149 DTLKIAKKV-HPELESKSLSALCEHY------KIENKAAHRAYFDALATAKLYQTLSHYF 201

Query: 543 IENSNVILQL----WLLLRPKLIVEKLLHVYERL 572
             ++    +     + + +P+    K L + ERL
Sbjct: 202 EPDNPKTFKPSQLTYKIRKPQPATPKQLALLERL 235


>gi|78369362|ref|NP_001030353.1| XPG-complementing protein [Bos taurus]
 gi|77567831|gb|AAI07529.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 5 [Bos taurus]
 gi|296481618|gb|DAA23733.1| XPG-complementing protein [Bos taurus]
          Length = 1201

 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 68/201 (33%), Gaps = 26/201 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 789 QELLRLFGIPYIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 843

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 844 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 901

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLR----------TDVPITIPLEH-- 261
           LE +   +    + +  + I       ++ +KL  L+           D  +   ++   
Sbjct: 902 LEPLRKFSEWWHEAQENKKIRPNPYDTKVKKKLRKLQLTPGFPNPAVADAYLKPVVDESK 961

Query: 262 --LILEDCNGPRLISFLKALE 280
              +    +  ++  F +   
Sbjct: 962 GSFLWGKPDLDKIREFCQRYF 982


>gi|323499349|ref|ZP_08104325.1| ribonuclease D [Vibrio sinaloensis DSM 21326]
 gi|323315534|gb|EGA68569.1| ribonuclease D [Vibrio sinaloensis DSM 21326]
          Length = 371

 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 61/206 (29%), Gaps = 27/206 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  +  T ++    ++                  F+ +   I +               
Sbjct: 2   NYQIVTQTSELVAVCKQARESDVVMLDTEFVRTRTFYPQLGLIQL--------------- 46

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
                     +  +  +    E ++   +  ++   LK+ H    D  V H  +G     
Sbjct: 47  -------FDGEHLSLIDPTELEDMTAFVQLLQDTSVLKVLHACGEDLEVFHNSFGCLPYP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  LM+  L     S   A++   +L     E+ KS   +  + +    +  ++A  +
Sbjct: 100 MVDTQLMAAFL-GHGLSTGFAALVDHYLQV---ELDKSESRTDWLARPLTDKQLDYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER 571
              +  L+  L   +         ++
Sbjct: 156 VFYLWPLYEKLLAAVTEAGWWEAAQQ 181


>gi|297619418|ref|YP_003707523.1| flap structure-specific endonuclease [Methanococcus voltae A3]
 gi|297378395|gb|ADI36550.1| flap structure-specific endonuclease [Methanococcus voltae A3]
          Length = 327

 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 39/235 (16%)

Query: 4   ENHLFLVDGSSFIY------RAFYATPLLSRKHDGLPVNA----IAGFCNMLWKLLQNSR 53
            N   ++D  + IY      R    TPL  +   G   +A         NML   L    
Sbjct: 20  NNKKIVIDAMNVIYQFLSSIRLRDGTPL--KNSSGETTSAYNGIFYKTINMLEMGLTPIW 77

Query: 54  KESIASHFA--VIFDYPAVTFRNEIYPDY----KANRPKIPEMLLPQLPL--------VR 99
                +H    +  +    T R +   +Y    K    +  +    ++           +
Sbjct: 78  VFDGQAHELKEITREERRKT-RQKALSEYLVAKKEEDTEKMQKFAKRMNYLDTNMVLNCK 136

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
                 G+P +   G E +   A         G A  ++S D D +   +       T  
Sbjct: 137 RLLDLMGVPHLTS-GSEGEAQCAEIVKK----GDAFAVVSQDYDSLLYGADRVIRNITSS 191

Query: 160 E----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQ 209
                E I+++ V+ +  I   +++ +  L G   D  P G+ G+G K A  +++
Sbjct: 192 SSKEFEYIELKDVLDELDINRSQLIDMSILIG--TDYNPKGVKGLGPKKALDVVK 244


>gi|170094937|ref|XP_001878689.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645993|gb|EDR10239.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 532

 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 453 LKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSG-RSSHDIASIAQ 510
           L+   EN +  K+G NI  D K +   YGI  +   ++  ++ V D   +    + S+A+
Sbjct: 284 LQSLIENPNVPKMGVNILNDGKKLFRDYGILAQSLVELGALAMVADPAAKRRRKMVSLAK 343

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
               Y  K + K    +   +   D +  ++A  +++  +Q++  L
Sbjct: 344 LVEQYCGKLLEKGSIRTGNWEAKLDQEQIDYAANDAHSTIQVYNEL 389


>gi|1209080|gb|AAA91039.1| XPG [Mus musculus]
 gi|1209097|gb|AAB17885.1| XPG [Mus musculus]
          Length = 1170

 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 52/226 (23%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 772 QELLRLFGVPYIQAP-MEAEAQCAMLDLSDQTSGT----ITDDSDIWLFGARHVYKNFFN 826

Query: 159 KEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           K + ++    +  +   G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 827 KNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGRG 884

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED------- 266
           L+ +L                E+   A+ ++K+     D  +   L  L L         
Sbjct: 885 LDPLL-------------KFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAV 931

Query: 267 --------------------CNGPRLISFLKALEFTKLINRVATTY 292
                                +  ++  F +       +    + Y
Sbjct: 932 ADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLY 977


>gi|190575218|ref|YP_001973063.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
 gi|190013140|emb|CAQ46772.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
          Length = 359

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 60/191 (31%), Gaps = 9/191 (4%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
                 +    F  +P  I + T   ++ T +    +   + +   QD    + L   + 
Sbjct: 4   WITTPAELDAYFQQRPTRIGLDTEFIRERTFWPQLAL---VQMAVGQDILLIDPLIPGMT 60

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             L  +  +E   K+ H+   D +      G+  R   D  + +  L           + 
Sbjct: 61  EALAHWLADESITKVMHSASEDLVAFRWACGVLPRPLFDTQIGA-SLAGIGGGMGYQKLV 119

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHV 568
            +        + K    S  + +       ++A ++   +  L   +  +L        +
Sbjct: 120 AEITGVA---LAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIDARLQALGRQQWL 176

Query: 569 YERLDKPMIDV 579
           ++  ++ +  V
Sbjct: 177 HDDGERLLASV 187


>gi|170726464|ref|YP_001760490.1| ribonuclease D [Shewanella woodyi ATCC 51908]
 gi|169811811|gb|ACA86395.1| ribonuclease D [Shewanella woodyi ATCC 51908]
          Length = 369

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 59/210 (28%), Gaps = 28/210 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  I +   + + V +                  F+++   I             K   
Sbjct: 3   AFQYIDDDASLAKLVSQYRESQLLVLDTEFVRTRTFYARLGLI--------QAYDGKTLA 54

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
           +   ++V                LS             I H+   D  V  R G      
Sbjct: 55  LIDPVAVSD--------------LSGFWSLLTEPSITTILHSCSEDLEVFARNGQCQPVK 100

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  + +  L         A + ++ L+     + K    +  + +        +A  +
Sbjct: 101 LFDSQIAA-ALCGFGHGLGYAKLVEQTLNIP---LDKGESRTDWMKRPLSEAQLNYAAND 156

Query: 546 SNVILQLWLLLRPKLIVEK-LLHVYERLDK 574
              + QL+  L  KL  +  L  V+E  ++
Sbjct: 157 VYYLYQLYPQLVEKLEEQNRLGWVFEEGER 186


>gi|325171258|ref|YP_004251230.1| putative exonuclease [Vibrio phage ICP2]
 gi|323512284|gb|ADX87741.1| putative exonuclease [Vibrio phage ICP2]
          Length = 283

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 15/164 (9%)

Query: 37  AIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEI-----YPDYKANRPKIPEML 91
           A++     +  +L +++ +       V+F      +R ++     YP YK NR  +    
Sbjct: 60  AVSRCEKFIQGILDDAQCDDY-----VLFIGGGNNYRYDLPHPKGYP-YKGNRTDMHTPF 113

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151
                  +        P I   G+EADD          +    + +   DKD+  +    
Sbjct: 114 YLDE--CKNYLMECH-PTIVCDGYEADDGCGILMSGGMEGYDELLLCHIDKDMDMIEGNH 170

Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195
                 +  +            +   +   LQ L+GD+ DNIPG
Sbjct: 171 MRWSRNINGKDF-PAEFYTVNKVEALRHFYLQLLSGDTTDNIPG 213


>gi|57239422|ref|YP_180558.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579394|ref|YP_197606.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|57161501|emb|CAH58427.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58418020|emb|CAI27224.1| Ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 389

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 78/209 (37%), Gaps = 30/209 (14%)

Query: 370 KIVNTKDIQQWVQKL--ETIGSASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            I  T  +Q    +L        +         + ++ +   I I+  + K         
Sbjct: 5   LIDTTGKLQDVCNQLLMSCPKFIAVDTEFIRNCNEYYPRLSLIQIAWSEGKCVI------ 58

Query: 427 IFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMR 484
                           + L  +I LS L+  F N+  +KI H+ K D   L  ++     
Sbjct: 59  ----------------DVLADDIDLSVLESIFYNKEIVKIFHDCKQDIDALLTKFPRIPY 102

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D  + +       ++   + +  ++L  +  ++   R + + +  +SD ++ ++A++
Sbjct: 103 PIFDSQIAAMFCAYYDNAVGYSKLVAQFLDVSLDKLTLKRSNWL-MRPLSDDKI-QYALD 160

Query: 545 NSNVILQLWLLLRPKLIVEK-LLHVYERL 572
           +   + +L+ +L   LI  K LL   E +
Sbjct: 161 DVVYLYELYQVLYDNLISSKRLLWFLEEM 189


>gi|302916517|ref|XP_003052069.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
           77-13-4]
 gi|256733008|gb|EEU46356.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
           77-13-4]
          Length = 833

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 73/217 (33%), Gaps = 30/217 (13%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           K   +  + +   P++    T +   + + + +++L+     +  +              
Sbjct: 204 KRVYKEAEPVMYQPVDTTQATWVDTYEGVLEMLKELKKAKEIAVDLE------------- 250

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
                    D  S+      + +S              +  L  L + F N   +K+ H 
Sbjct: 251 -------HHDFRSYIGLVSLMQISTREKDWIVDTLQPWRHKLEVLNEVFTNPKIIKVFHG 303

Query: 469 IKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
              D + L R  G+ + G  D           +  +   S+A  +L     +    ++  
Sbjct: 304 AYMDMVWLQRDLGLYVNGLFDTFFAC-----DQLHYPAKSLA--FLLSKFVDFDADKQYQ 356

Query: 528 IPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +   +I     ++  +A  +++ +L ++  +R +L+ 
Sbjct: 357 LADWRIRPIPEEMMYYARSDTHYLLYIYDKVRNELVA 393


>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
 gi|210159428|gb|EEA90399.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
          Length = 377

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 31/194 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I    D+  +  +     + +          +H+K   + ++T D               
Sbjct: 3   ISTYDDLSAFCGRARCHVAIAIDTEFLRERTYHAKLCLVQVATPD--------------- 47

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
                  +    + LT + LS L +   +   LK+ H    D  VL H  G+      D 
Sbjct: 48  -------ECVVIDPLTIDDLSPLAELMADVDTLKVFHACSQDMEVLVHTLGVCPAPIFDT 100

Query: 490 MLMSYVL--DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            + +  L   +  S H++        S+    + K+   +    +    Q  E+A+++  
Sbjct: 101 QVAAGFLGERAQCSYHNLVH------SFCGVSLPKTESLTDWSRRPLSPQQIEYAVDDVR 154

Query: 548 VILQLWLLLRPKLI 561
            ++  + ++  KL 
Sbjct: 155 YLIDAYRVIESKLH 168


>gi|198458527|ref|XP_002138553.1| GA24836 [Drosophila pseudoobscura pseudoobscura]
 gi|198136373|gb|EDY69111.1| GA24836 [Drosophila pseudoobscura pseudoobscura]
          Length = 830

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 11/130 (8%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY- 452
            +TD +  + +K   I +S   +  +   K E   I++     +           +++  
Sbjct: 550 FVTDILLKYAAKNEGIVVSLDCEGINLGLKGEITLIEIGTARGEAFLFDVQSCPAMVTDG 609

Query: 453 -LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL---DSGRSSH---- 503
            LK   E+E  +K+ H+ + D   +  ++GI +R   D      +L   ++G+  +    
Sbjct: 610 GLKTVLEHEQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKY 669

Query: 504 -DIASIAQKW 512
             + S+ +++
Sbjct: 670 ISLNSLCEQY 679


>gi|51338724|sp|P35689|ERCC5_MOUSE RecName: Full=DNA repair protein complementing XP-G cells homolog;
           AltName: Full=DNA excision repair protein ERCC-5;
           AltName: Full=Xeroderma pigmentosum group
           G-complementing protein homolog
          Length = 1170

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 52/226 (23%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 772 QELLRLFGVPYIQAP-MEAEAQCAMLDLSDQTSGT----ITDDSDIWLFGARHVYKNFFN 826

Query: 159 KEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           K + ++    +  +   G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 827 KNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGRG 884

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED------- 266
           L+ +L                E+   A+ ++K+     D  +   L  L L         
Sbjct: 885 LDPLL-------------KFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAV 931

Query: 267 --------------------CNGPRLISFLKALEFTKLINRVATTY 292
                                +  ++  F +       +    + Y
Sbjct: 932 ADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLY 977


>gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 645

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 75/219 (34%), Gaps = 40/219 (18%)

Query: 384 LETIGSASFKIITDTMDAFHS-KPIAIA----ISTLDQKDDTSFKVETIFIDLS------ 432
           L  +    F   T  ++     + I I     ++   ++ ++  ++      +       
Sbjct: 450 LAELAYTVFDTETTGLEPSAGDEIIQIGATRIVAGKLRRHESFEQLVDPQRAIPERTVAI 509

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISMR-GFE 487
              +          +E+L  L  F  +   + + HN  +D   L       G+       
Sbjct: 510 HGITPAMVAGQPTIREVLPALHAFAHD--TVLVAHNAAFDLRFLELKERAAGVRFDMPVL 567

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-AIENS 546
           D +L+S VL   +  H + +IA++                     +    +  H A+ ++
Sbjct: 568 DTLLLSQVLHPNQERHSLEAIAER---------------------LGVPVLGRHTALGDA 606

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            V  +++L + P L V  +  + E L+      ++++  
Sbjct: 607 IVTAEVFLKMIPLLQVAGIRTLGEALEASRRSALARLAY 645


>gi|223995113|ref|XP_002287240.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976356|gb|EED94683.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 743

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 452 YLKKFFENEHFLKIGHNIKY-DKLVLHR-YGISMRGFEDIMLMSY-VLDSGRSSHDIASI 508
           YL   F +   +KIGH I   D   LHR +GI +    D    S  +L   +    +A +
Sbjct: 352 YLGPLFSDPRIVKIGHGIGGMDTTSLHRDFGIVIVNAFDTFEASAVLLHGKKGGLGLAKL 411

Query: 509 AQKWLSYTRKEI--LKSRKSSIPIDKISD-SQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
            + +     ++   LKS+       K        E+   +   ++ +  LL   L+ + L
Sbjct: 412 CKHYGLPCWQDYANLKSQFQCSDWRKRPLCDDALEYGRYDVRFLITIRQLLLRDLVNKDL 471

Query: 566 L-----HVYERLD 573
           L      +Y+ +D
Sbjct: 472 LGGRYYDIYQSID 484


>gi|292658984|gb|ADE34372.1| DNA repair protein RAD2 [Turbot reddish body iridovirus]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 79  DYKANRPKI-----PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           DY  +R +      PE        +R     FG+P       E +     +       G 
Sbjct: 138 DYVEHRVRTHQAVTPED----YDRMRAILTGFGVPY-TFARTEGE----MHCVQMVANGQ 188

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           A  +++ D D + + +  +  Y           ++ +  V++K  + P + +    L G 
Sbjct: 189 ADLVMTIDTDAILVSALHSVPYVLTNFKAGCFRQVSVHEVLEKCHMTPAQFLDFCILLG- 247

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENI 217
             D    I GIG+  A  L++ +G+++N+
Sbjct: 248 -TDFNKHIRGIGHVKARNLIKTHGSIDNM 275


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score = 46.6 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 74/199 (37%), Gaps = 33/199 (16%)

Query: 384 LETIGSASFKIITDTMDAFHSKPI---AIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           L++     F + T  +   +++ I   A+ I    Q +   F V+     +    ++ + 
Sbjct: 396 LKSARYVVFDLETTGLSPVYNEIIEFGAVVIQDGIQTESHQFFVKAK-EPIPTEITKITN 454

Query: 441 GKNTLTKE-ILSYLKKFFENEHFLK----IGHNIKYDKLVLHRY-----GISM-RGFEDI 489
               +  E  +   + F+     +K    + HN K+D   L         +++ +   D 
Sbjct: 455 ITQEMVDEQGIEATEAFYRISKIIKDSILVAHNAKFDFNFLAELFKKEASMTIDQPIIDT 514

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + +S  L+  + SH + ++++    Y                   D  V   A  ++ ++
Sbjct: 515 LQVSRFLNPSQKSHSLKNVSKLIGLYY------------------DETVAHRADYDAEIL 556

Query: 550 LQLWLLLRPKLIVEKLLHV 568
            ++WL    +++ + +  +
Sbjct: 557 SKVWLNFLTQILDQDITDL 575


>gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469]
 gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469]
          Length = 379

 Score = 46.6 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 67/193 (34%), Gaps = 27/193 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  ++++  + ++ +T    +          +  K   + +ST                 
Sbjct: 6   IATSEELFAFCERAKTSHILAVDTEFLREKTYFPKLCLVQVST----------------- 48

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDI 489
                  +    + L  + L+ LK+  EN   +KI H    D +++L +   +     D 
Sbjct: 49  -----GSEIAAIDPLLIDDLTPLKELLENPEIVKILHACSQDLEVLLEKMDCACAPVFDT 103

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + +  L   R     A + + + +     + K+   +    +  D +   +A ++   +
Sbjct: 104 QVAAAFL-GMRQQVSYAGLVENFANVK---LAKAESLTDWSKRPLDKEQLVYAEDDVRYL 159

Query: 550 LQLWLLLRPKLIV 562
             ++  +  KLI 
Sbjct: 160 PAIYNQMVEKLIK 172


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score = 46.6 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 20/145 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ------ 437
           L+      F + T  + + + K   I ++ +  KD         F +     ++      
Sbjct: 413 LKDATYVVFDVETTGLSSQYDKI--IELAAVKVKDGEIIDKFERFSNPGERLNETIKNLT 470

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM--RGFE 487
               D        + +L+  K F  +   + + HN  +D         R G      G  
Sbjct: 471 GITDDMLIDAPPIESVLNDFKDFVGDA--IYVAHNASFDMGFIDTGFDRLGYGPTENGVI 528

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + +S  +++    H +  +A+K+
Sbjct: 529 DTLELSRTINTEMGKHGLNFLAKKY 553


>gi|269859663|ref|XP_002649556.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
 gi|317374899|sp|B7XHS8|FEN1_ENTBH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|220067107|gb|EED44575.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
          Length = 358

 Score = 46.6 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 15/142 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTY-IAEKEGFAVTIISTDKDLMQLVSP------ 150
            +   +   IP +     EA+   A               + + D D +   SP      
Sbjct: 140 CQKTLRLLNIPYVIAPS-EAEAYCAWLCKSKFVDA-----VATEDMDSLCFGSPLLLRNF 193

Query: 151 TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
            T L   +  E+ ++  +++      E+ V L  L G   D    I G+G K A   +++
Sbjct: 194 NTALSQKLPVEEYNLHKILEGLQFTMEQFVDLCILLG--CDYSATIRGVGMKRAFEYIKK 251

Query: 211 YGNLENILINASRIKQKKRREN 232
           Y +++N++         K +E 
Sbjct: 252 YKSIDNLIGIVDFPDDFKYKEA 273


>gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
 gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
          Length = 1464

 Score = 46.6 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 56/145 (38%), Gaps = 18/145 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSV 433
           +L+      F + T  + A ++  I +A         I+  D+  +    +     DL+ 
Sbjct: 420 ELKEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTDLTG 479

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFE 487
            T +       L +++L   + F ++   + + HN  +D   ++    R+G+    +   
Sbjct: 480 ITDEHVKNAKPL-EQVLQEFQDFCQD--TVLVAHNATFDVGFMNVNYERHGLPRITQPVI 536

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D +  +  L      H +  + +++
Sbjct: 537 DTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|325497053|gb|EGC94912.1| ribonuclease D [Escherichia fergusonii ECD227]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +           
Sbjct: 2   NYQLITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH--------LA 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG 485
           +   L++                 S LK    +    K  H    D ++ L+++G   + 
Sbjct: 54  LIDPLTIRDW--------------SPLKSVLRDPAITKFLHAGSEDLEVFLNKFGEMPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQVLAAFCGRP--MSWGFASMVEEYSGVI---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMAETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
 gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
          Length = 465

 Score = 46.6 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 67/207 (32%), Gaps = 37/207 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS------TLDQKDDTSFKVETIFIDLS----V 433
           L ++    F   T  +     + + I          ++ +   +       I  +     
Sbjct: 253 LRSLSFTVFDTETTGLLPHKDEIVQIGALRVVNGRLVNGEGFETLVNPGFDIPAASTAVH 312

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRG-FED 488
             + +    + + K   +   +F ++   + + HN  +D   L R+    G+       D
Sbjct: 313 GVTTEMVRNSPMIKTAGAAFHQFCKD--SVLVAHNAPFDIAFLRRHAKSSGVDWNHMVLD 370

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-AIENSN 547
            +L+S V+      H + ++  +                    +I+  +   H A+ ++ 
Sbjct: 371 TVLLSAVIFGASVPHTLDALCDRL-------------------EINIPEALRHTAMGDAQ 411

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDK 574
              +  L + P L       + E L++
Sbjct: 412 ATAEALLRMLPMLEARGFTTLDEVLEQ 438


>gi|312066427|ref|XP_003136265.1| 3'-5' exonuclease [Loa loa]
 gi|307768577|gb|EFO27811.1| 3'-5' exonuclease [Loa loa]
          Length = 845

 Score = 46.6 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 457 FENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
           F + + LK+ H    D + L R +GI +    D      VL+   S      + Q   ++
Sbjct: 331 FTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDTYKAMRVLN--YSKFSYQHLVQTCCNH 388

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           T   + K  + +    +      + +A  +++ +L  +  LR KL+ + 
Sbjct: 389 T---LDKKFQKADWRLRPLTGAHKTYARSDTHYLLHCYDQLRIKLLDQG 434


>gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
          Length = 470

 Score = 46.6 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 14/155 (9%)

Query: 371 IVNTKDIQQWVQK-LETIGSASFKIITDTMDAFHSKPIAIAIS------TLDQKDDTSFK 423
           +++T     +  + L  +    F   T  +     + + I          ++ +      
Sbjct: 259 LLDTPGDDVFEDRPLRDLCFVVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLV 318

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE--NEHFLKIGHNIKYDKLVLHRY-- 479
              I I  +            L    ++     F   +   + + HN  +D   LHR+  
Sbjct: 319 DPGIPIPAASTRVHKINDAMVLGAPDIAKAGLIFHQFSRDAVIVAHNAPFDMAFLHRHAK 378

Query: 480 --GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
             G+       D +L+S VL     +H + ++  +
Sbjct: 379 RMGVEWTHPVLDTVLLSAVLFGASETHTLDAVCAR 413


>gi|5688955|dbj|BAA82754.1| DNA repair protein RAD2 [Red sea bream iridovirus]
 gi|327396892|dbj|BAK14258.1| probable XPG/RAD2 family DNA repair protein [Red sea bream
           iridovirus]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 79  DYKANRPKI-----PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           DY  +R +      PE        +R     FG+P       E +     +       G 
Sbjct: 138 DYVEHRVRTHQAVTPED----YDRMRAILTGFGVPY-TFARTEGE----MHCVQMVANGQ 188

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           A  +++ D D + + +  +  Y           ++ +  V++K  + P + +    L G 
Sbjct: 189 ADLVMTIDTDAILVSALHSVPYVLTNFKAGCFRQVSVHEVLEKCHMTPAQFLDFCILLG- 247

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENI 217
             D    I GIG+  A  L++ +G+++N+
Sbjct: 248 -TDFNKHIRGIGHVKARNLIKTHGSIDNM 275


>gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1456

 Score = 46.6 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 56/145 (38%), Gaps = 18/145 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSV 433
           +L+      F + T  + A ++  I +A         I+  D+  +    +     DL+ 
Sbjct: 412 ELKEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTDLTG 471

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFE 487
            T +       L +++L   + F ++   + + HN  +D   ++    R+G+    +   
Sbjct: 472 ITDEHVKNAKPL-EQVLQEFQDFCQD--TVLVAHNATFDVGFMNVNYERHGLPRITQPVI 528

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D +  +  L      H +  + +++
Sbjct: 529 DTLEFARNLYPEYKRHGLGPLTKRF 553


>gi|114326875|ref|YP_744031.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315049|gb|ABI61109.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 429

 Score = 46.6 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 34/223 (15%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P+    +      Q      S T I  ++D+      L      +          +  + 
Sbjct: 25  PRTHGYKSSPMSRQSRSRFPSPTLITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPEL 84

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
                  +         V                      +  L+ + +   +   +K+ 
Sbjct: 85  -----CVVQLGGADCVAV----------------IDTLAPELDLAPVGELLADPAVIKVF 123

Query: 467 HNIKYDKLV-LHRYGISMRGFEDIMLMSYVLD-SGRSSHD--IASIAQKWLSYTRKEILK 522
           H  + D  + L R+G   +   D  + + V     +  +D  ++S+    +         
Sbjct: 124 HACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQVGYDTLVSSLTGGHID-------- 175

Query: 523 SRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEK 564
                    +   SQ Q ++A  +   +  ++  LR +L  E 
Sbjct: 176 KAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEG 218


>gi|66732780|gb|AAY53371.1| gp68 [Listeria phage P100]
          Length = 278

 Score = 46.6 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 14/119 (11%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDA--FHSKPIAIA 410
           + Q    +     SY  + + + +Q   + +++     ++ + T+T+      +KP+ ++
Sbjct: 171 KTQGDEAFTPAEVSYELVTSLERVQDIFENEVKNYPVIAWDLETNTLLPEMLGAKPLVMS 230

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           +S  + +  T        I L    S     +    +EI +Y+K+F  +++ +K+GHNI
Sbjct: 231 VSWKEGQGVT--------IPLEHRESH---WEAYELEEIYNYIKEFVADKNIVKVGHNI 278


>gi|19113794|ref|NP_592882.1| nuclease, XP-G family [Schizosaccharomyces pombe 972h-]
 gi|1175380|sp|Q09708|YAGG_SCHPO RecName: Full=Uncharacterized protein C12G12.16c
 gi|929887|emb|CAA90586.1| nuclease, XP-G family [Schizosaccharomyces pombe]
          Length = 496

 Score = 46.6 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 98  VRLATQAFGIPAIEIQ-GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
           +    +  GIPA     G EA+   +  +    +   A  + + D D++ L S     + 
Sbjct: 281 IFEILKILGIPASFSPIGVEAEAFASAIS----QNNLAYAVATQDTDVLLLGSSMISNFL 336

Query: 157 TVKE------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
            + +      + +D   + ++  +  +       + G   D    IP IG   A  L++ 
Sbjct: 337 DLNDNFHLPLQIMDPRKIAQELNLTFDGFQDYCLMCG--TDFTSRIPKIGPVRALKLIRY 394

Query: 211 YGNLENILINA 221
           YGN  ++L   
Sbjct: 395 YGNAFDVLKAL 405


>gi|74215723|dbj|BAE23409.1| unnamed protein product [Mus musculus]
          Length = 1166

 Score = 46.6 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 52/226 (23%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 772 QELLRLFGVPYIQAP-MEAEAQCAMLDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 826

Query: 159 KEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           K + ++    +  +   G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 827 KNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGRG 884

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED------- 266
           L+ +L                E+   A+ ++K+     D  +   L  L L         
Sbjct: 885 LDPLL-------------KFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAV 931

Query: 267 --------------------CNGPRLISFLKALEFTKLINRVATTY 292
                                +  ++  F +       +    + Y
Sbjct: 932 ADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLY 977


>gi|127513115|ref|YP_001094312.1| ribonuclease D [Shewanella loihica PV-4]
 gi|126638410|gb|ABO24053.1| ribonuclease D [Shewanella loihica PV-4]
          Length = 368

 Score = 46.6 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 64/210 (30%), Gaps = 28/210 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  + +   + + V K                  +++K   I +   +           
Sbjct: 2   TFQYVEDDASLTELVDKYRQAKVLMLDTEFVRTRTYYAKLGLIQVYDGE--------TLA 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
           +   ++V                LS      E +  + + H+   D  VL RYG    + 
Sbjct: 54  LIDPVAVSD--------------LSAFWALLERDDMISVLHSCSEDLEVLARYGRCQPKV 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  + +            A + +  L     ++ K    +  + +       ++A  +
Sbjct: 100 LFDSQIAA-AFCGWGHGMGYAKLVEHCLGV---QLDKGESRTDWMKRPLSDAQLQYAAND 155

Query: 546 SNVILQLWLLLRPKLIVEK-LLHVYERLDK 574
            + + +L+  L  KL     +  + E  ++
Sbjct: 156 VDYLYRLYPQLLEKLQESGRMPWLLEEGER 185


>gi|145520595|ref|XP_001446153.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413630|emb|CAK78756.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1331

 Score = 46.6 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
           ++         +++LS ++   E+E   K+ H+ K D   LH   I  R   D 
Sbjct: 881 AKYLEADLVFHEQMLSVIRSILEDEGICKVFHDCKRDSQALHINQICPRNIADT 934


>gi|218710187|ref|YP_002417808.1| Ribonuclease D [Vibrio splendidus LGP32]
 gi|218323206|emb|CAV19383.1| Ribonuclease D [Vibrio splendidus LGP32]
          Length = 397

 Score = 46.6 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 66/209 (31%), Gaps = 33/209 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I   KD+++  Q+                                       +  T
Sbjct: 27  DYQIITQVKDLERVCQQAREADVVMLDTEF-------------------------VRTRT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKLVLHR-YGIS 482
            +  L +    D    + +    L  +  F    ++   LK+ H    D  V    +G +
Sbjct: 62  YYPQLGLIQLFDGETLSLIDPIALDEMTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCT 121

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D  +M+  L     S   A++  +++     ++ KS   +  + +    +  ++A
Sbjct: 122 PTPMVDTQIMAAFL-GHGLSTGFAALVSEFVGV---DLDKSESRTDWLARPLSQKQLDYA 177

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYER 571
             + + ++ ++  L  K++        ++
Sbjct: 178 AADVHYLMPMYNKLLEKVMEAGWWEAAQQ 206


>gi|170172544|ref|NP_035859.2| DNA repair protein complementing XP-G cells homolog [Mus musculus]
          Length = 1170

 Score = 46.6 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 52/226 (23%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 772 QELLRLFGVPYIQAP-MEAEAQCAMLDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 826

Query: 159 KEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           K + ++    +  +   G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 827 KNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGRG 884

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED------- 266
           L+ +L                E+   A+ ++K+     D  +   L  L L         
Sbjct: 885 LDPLL-------------KFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAV 931

Query: 267 --------------------CNGPRLISFLKALEFTKLINRVATTY 292
                                +  ++  F +       +    + Y
Sbjct: 932 ADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLY 977


>gi|157325092|ref|YP_001468517.1| gp137 [Listeria phage A511]
 gi|66733100|gb|AAY52918.1| gp137 [Listeria phage A511]
          Length = 278

 Score = 46.6 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 55/119 (46%), Gaps = 14/119 (11%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDA--FHSKPIAIA 410
           + Q    +     SY  + +   ++   + +++     ++ + T+T+      +KP+ ++
Sbjct: 171 KTQGDEAFTPAEVSYELVTSLDRVKDIFENEVKNHPVIAWDLETNTLLPEMLGAKPLVMS 230

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
           +S  + +  T        I L    S     ++   +EI +Y+K+F  +++ +K+GHNI
Sbjct: 231 VSWKEGQGVT--------IPLEHRESH---WEDHELEEIYNYIKEFVADKNIIKVGHNI 278


>gi|84393455|ref|ZP_00992211.1| ribonuclease D [Vibrio splendidus 12B01]
 gi|84375883|gb|EAP92774.1| ribonuclease D [Vibrio splendidus 12B01]
          Length = 313

 Score = 46.6 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 66/209 (31%), Gaps = 33/209 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I   KD+++  Q+                                       +  T
Sbjct: 27  DYQIITQVKDLERVCQQAREADVVMLDTEF-------------------------VRTRT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKLVLHR-YGIS 482
            +  L +    D    + +    L  +  F    ++   LK+ H    D  V    +G +
Sbjct: 62  YYPQLGLIQLFDGETLSLIDPIALDEMTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCT 121

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D  +M+  L     S   A++  +++     ++ KS   +  + +    +  ++A
Sbjct: 122 PTPMVDTQIMAAFL-GHGLSTGFAALVSEFVGV---DLDKSESRTDWLARPLSQKQLDYA 177

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYER 571
             + + ++ ++  L  K++        ++
Sbjct: 178 AADVHYLMPMYNKLLEKVMEAGWWEAAQQ 206


>gi|218548642|ref|YP_002382433.1| ribonuclease D [Escherichia fergusonii ATCC 35469]
 gi|218356183|emb|CAQ88800.1| ribonuclease D [Escherichia fergusonii ATCC 35469]
 gi|324113537|gb|EGC07512.1| ribonuclease D [Escherichia fergusonii B253]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 61/202 (30%), Gaps = 29/202 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +           
Sbjct: 2   NYQLITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH--------LA 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG 485
           +   L++                 S LK    +    K  H    D ++ L+++G   + 
Sbjct: 54  LIDPLTIRDW--------------SPLKSVLRDPAITKFLHAGSEDLEVFLNKFGEMPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQVLAAFCGRP--MSWGFASMVEEYSGVI---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEKLL 566
           +   +L +   L  +      L
Sbjct: 155 DVWYLLPITAKLMAETEASGWL 176


>gi|187954383|gb|AAI41071.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 5 [Mus musculus]
          Length = 1170

 Score = 46.6 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 52/226 (23%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 772 QELLRLFGVPYIQAP-MEAEAQCAMLDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 826

Query: 159 KEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           K + ++    +  +   G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 827 KNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGRG 884

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED------- 266
           L+ +L                E+   A+ ++K+     D  +   L  L L         
Sbjct: 885 LDPLL-------------KFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAV 931

Query: 267 --------------------CNGPRLISFLKALEFTKLINRVATTY 292
                                +  ++  F +       +    + Y
Sbjct: 932 ADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLY 977


>gi|58584866|ref|YP_198439.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419182|gb|AAW71197.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 206

 Score = 46.6 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L+K   +++  KI H  ++D  ++ +             + S ++ +   +H +  +  +
Sbjct: 64  LRKILGDKNITKIFHFARFDVSIICYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLE 123

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            L      + K ++SS    +    + + +A  +   + ++   L   L  E    + ++
Sbjct: 124 LLDTK---LNKQQQSSDWGSENLTDKQKSYAASDVLYLHKIKEKLDLMLERENRKELAQK 180

Query: 572 L-DKPMIDV 579
             +   I V
Sbjct: 181 CFEFLPIRV 189


>gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68]
          Length = 1463

 Score = 46.6 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA         I+  D+  D    +     DL+  
Sbjct: 420 LSDATYVVFDVETTGLSAVNNALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFTTDLTGI 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T +   G   L +++L   + F ++   + + HN  +D   ++    R G+ +  +   D
Sbjct: 480 TDEHVRGSKPL-EQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVID 536

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 537 TLEFARNLYPDFKRHGLGPLTKRF 560


>gi|167378108|ref|XP_001734673.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165903695|gb|EDR29139.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 755

 Score = 46.6 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 9/124 (7%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
              +    +   IP I   G EA+       Y  E +G    I + D D+    +     
Sbjct: 562 YQKLIKMFKEINIPYIIAPG-EAE----AQCYQLEHDGLCDYIATNDSDIFVYGAKNVIK 616

Query: 155 YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
                   +        +    +++     L     D   GIP IG  +A  ++  +  +
Sbjct: 617 NLFTSSHPLLYSSSTFDY--SLDQIRLYSLLVP--SDYSNGIPNIGPISAKKIINSFHTI 672

Query: 215 ENIL 218
            + L
Sbjct: 673 NDFL 676


>gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33]
 gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33]
 gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 05ZYH33]
 gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 98HAH33]
 gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1]
 gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14]
          Length = 1463

 Score = 46.6 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA         I+  D+  D    +     DL+  
Sbjct: 420 LSDATYVVFDVETTGLSAVNNALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFTTDLTGI 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T +   G   L +++L   + F ++   + + HN  +D   ++    R G+ +  +   D
Sbjct: 480 TDEHVRGSKPL-EQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVID 536

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 537 TLEFARNLYPDFKRHGLGPLTKRF 560


>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
 gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
           pulmonis]
          Length = 1435

 Score = 46.6 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 43/236 (18%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------ 436
           K+       + I T  +    ++ I    S +  K+    +    FI             
Sbjct: 398 KILDQEYVVYDIETTGLSPMLNELIQFGASVI--KNGRIIETHHFFIKPKSKLDSFTTKL 455

Query: 437 ----QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR----YGISMRGF-- 486
               Q+   K    +E L  +   F+    + + HN  +D   L +      I       
Sbjct: 456 TGITQEHLEKGYELQEALEKISSIFK--ARIMVAHNAAFDHNFLKQKFIDNNIEFEEMIS 513

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D + ++ VL+    S+ +  +A K                  +  + D  +   A  +S
Sbjct: 514 IDTLNLAKVLNPIYRSYRLGEVASK------------------LSVVYDPSIAHRADYDS 555

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV-SQMEITGIQI---DQDLLKQV 598
           +V+  +++L    L  EK +++++ L+    +   S+M    I I   +Q  LK++
Sbjct: 556 SVLTNIFILQMSHLK-EKGINLFKELNSLSSEKFYSKMFAKDISIIAKNQAGLKEL 610


>gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
          Length = 1463

 Score = 46.6 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA         I+  D+  D    +     DL+  
Sbjct: 420 LSDATYVVFDVETTGLSAVNNALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFTTDLTGI 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T +   G   L +++L   + F ++   + + HN  +D   ++    R G+ +  +   D
Sbjct: 480 TDEHVRGSKPL-EQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVID 536

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 537 TLEFARNLYPDFKRHGLGPLTKRF 560


>gi|330868872|gb|EGH03581.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 318

 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 63/194 (32%), Gaps = 20/194 (10%)

Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
                   Y  +++P+ D +      GI ID   L+     I  +     +         
Sbjct: 143 KDNNEWERYTTVERPVADYLISSAAAGIAIDTTRLRIHKENIEFDYYMALKQFSAKYDVP 202

Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680
             L S   +   L   + +               + +      ++    ++L  R+++K 
Sbjct: 203 LELPSNDDIIRRL-EPMGYDFLG--------VDVEYVLNFVPMNDNFAIDLLRLRKIAKS 253

Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
           +S       N I    +R++       ++T R+   +P+LQN      L +  R   +  
Sbjct: 254 RSV-----LNAIPLSQKRIYPIVDCFGSITSRIYFKDPSLQN------LAKHHRDILVPD 302

Query: 741 PTKKLISADYSQIE 754
             +     DY Q E
Sbjct: 303 EGRAFSYVDYEQYE 316


>gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis]
          Length = 329

 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 107/308 (34%), Gaps = 35/308 (11%)

Query: 314 IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373
            A+   + +  T +T Q         ++     P++ FL +       P++      I  
Sbjct: 19  AALADFLHQQRTQQTEQDMFAHPYQYELEHFSVPEE-FLGKPHIQMFRPVSETPCHFIST 77

Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV 433
             ++ +  +KL T    +  +                          SF   T  + +S 
Sbjct: 78  LDELVELSEKLRTCKEFALDLE--------------------HHSYRSFLGLTCLVQIST 117

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLM 492
            T         L  + L  L + F +   +K+ H    D   L R +G+ +    D    
Sbjct: 118 RTEDFILDALELRGD-LYVLNETFTDPAIIKVLHGADSDVEWLQRDFGLYLVNVFDTHQA 176

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSNVIL 550
           +  L      H +  + + + +     +  +++  +   +I     ++  +A ++++ +L
Sbjct: 177 ARQL--SLGRHSLDHLLKLYCN-----VDANKQYQLADWRIRPLPEEMLNYARDDTHYLL 229

Query: 551 QLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
            ++  +R +L     +L    + + +   D+  +  +  I  +   L+    +  K+L +
Sbjct: 230 YIYDRVRTELWERGNELPAQLQVVWQRSRDICLKKYLKPIFTENSYLELYRKQ-KKHLNT 288

Query: 609 LEENIYDL 616
            +   + L
Sbjct: 289 QQMTAFKL 296


>gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
 gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
          Length = 889

 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 84/245 (34%), Gaps = 42/245 (17%)

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI---AI 409
           ER      +   N +Y        +Q + +         F   T  +D F    +   AI
Sbjct: 475 ERALTPVDFLTPNPTY--------MQTFARCYAEREVVVFDTETTGLDVFADDIVQLAAI 526

Query: 410 AISTLDQKDDTSF--------KVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENE 460
            +      + +SF        ++  +  D+     ++      L+ +E  +    +  ++
Sbjct: 527 KVRNGKVVEGSSFNVFIRTEREIPAMLGDIPNPIIEEMKHHECLSPEEAFAQFMDYVADD 586

Query: 461 HFLKIGHNIKYDKLVLHRYGI------SMRGF-----EDIMLMSYVLDSGRSSHDIASIA 509
             L  GHN++YD  +L  Y +       +  +      D + +  +L   + S+ +  + 
Sbjct: 587 AVL--GHNVEYDFHILL-YNLLRHAPQWVERWKAVERFDSLKLIRLLHPRQKSYKLKHLL 643

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLH 567
           ++        +  +       D ++   + ++   ++   +          + +VEK  H
Sbjct: 644 ERLG------LEGTNSHLADDDIMATKSLADYCYRHAVACVDEQQRFIDAHRPMVEKFRH 697

Query: 568 VYERL 572
           VY  L
Sbjct: 698 VYADL 702


>gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3]
 gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3]
          Length = 1463

 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA         I+  D+  D    +     DL+  
Sbjct: 420 LSDATYVVFDVETTGLSAVNNALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFTTDLTGI 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T +   G   L +++L   + F ++   + + HN  +D   ++    R G+ +  +   D
Sbjct: 480 TDEHVRGSKPL-EQVLREFQDFCQD--SVMVAHNATFDVGFMNVNYERAGLPIISQPVID 536

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 537 TLEFARNLYPDFKRHGLGPLTKRF 560


>gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
 gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
          Length = 470

 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 17/152 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           LE++    F   T  +     + + I    +        +V    +D        ST  +
Sbjct: 273 LESLSFTVFDTETTGLMPNKDEIVQIGAVRVVNGKIVPGEVIDQLVDPGRPIPPASTKVH 332

Query: 444 TLTKEIL----------SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-----RGFED 488
            +T E++               F ++   + + HN  +D   LHRYG            D
Sbjct: 333 GITDEMVKGAPDAVTSVQQFHTFAKD--SVIVAHNAPFDMAFLHRYGRESGLEWDHPIMD 390

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
            +L+S V+      H + ++  +       E+
Sbjct: 391 TVLLSAVVYGTTEIHTLDALCDRLGVTIPVEL 422


>gi|21234381|ref|NP_640291.1| 5' to 3' exonuclease-like protein [Vibrio phage VpV262]
 gi|21064894|gb|AAM28378.1| 5' to 3' exonuclease-like protein [Vibrio phage VpV262]
          Length = 323

 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 57/160 (35%), Gaps = 30/160 (18%)

Query: 65  FDYPAVT-FRNE--IYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEADDI 120
           F     T +RNE      YK  R  + + +      +R      F     E  G EADD 
Sbjct: 123 FLTKGATLWRNEDATIQKYKGCRDNMEKPVY--YDDIRQFMVDKFHAHVCE--GLEADDS 178

Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM- 179
           IA        E   V + S DKDL  +           +              + P +  
Sbjct: 179 IAATAR---NEVGRVIVFSGDKDLRTVAGYQCNTGKLKEGIFY----------VTPLQAC 225

Query: 180 --VCLQALTGDSIDNIPGI------PGIGYKTAALLLQEY 211
             + +Q L GD ID+I G+       G G KTA   ++++
Sbjct: 226 RNLYIQMLMGDRIDHIKGLSGDRHQRGYGIKTATKAIEQF 265


>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
 gi|1090178|prf||2018296A DNA polymerase III
          Length = 1435

 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 43/236 (18%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------ 436
           K+       + I T  +    ++ I    S +  K+    +    FI             
Sbjct: 398 KILDQEYVVYDIETTGLSPMLNELIQFGASVI--KNGRIIETHHFFIKPKSKLDSFTTKL 455

Query: 437 ----QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR----YGISMRGF-- 486
               Q+   K    +E L  +   F+    + + HN  +D   L +      I       
Sbjct: 456 TGITQEHLEKGYELQEALEKISSIFK--ARIMVAHNAAFDHNFLKQKFIDNNIEFEEMIS 513

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D + ++ VL+    S+ +  +A K                  +  + D  +   A  +S
Sbjct: 514 IDTLNLAKVLNPIYRSYRLGEVASK------------------LSVVYDPSIAHRADYDS 555

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV-SQMEITGIQI---DQDLLKQV 598
           +V+  +++L    L  EK +++++ L+    +   S+M    I I   +Q  LK++
Sbjct: 556 SVLTNIFILQMSHLK-EKGINLFKELNSLSSEKFYSKMFAKDISIIAKNQAGLKEL 610


>gi|327307022|ref|XP_003238202.1| hypothetical protein TERG_00194 [Trichophyton rubrum CBS 118892]
 gi|326458458|gb|EGD83911.1| hypothetical protein TERG_00194 [Trichophyton rubrum CBS 118892]
          Length = 768

 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 82/246 (33%), Gaps = 46/246 (18%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
             +FD P         PDYK  R         Q+ L R   + F  P     G EA+   
Sbjct: 75  IFVFDGPHR-------PDYKRGRLVNKNAAAAQIELSRKLIELFSYPCHMAPG-EAE--- 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--------EKIDIEHVIKKWG 173
                  ++ G    ++S D D + +      L +  K           +D+ +   + G
Sbjct: 124 -AECAKLQQAGVVDAVMSNDVDAL-MFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDG 181

Query: 174 -----IPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL-QEYGNLENILINASRI-- 224
                +    M+ +  L+G   D  P G+   G K A  +    +G  E++L     +  
Sbjct: 182 DSKVTLDTRGMILVALLSG--GDYSPAGVALCGPKLAVEIARAGFG--EDLLEITQDLLS 237

Query: 225 --KQKKRRENILEYAETARLSRKL--------VMLRTDVPITIPLEHLILEDCNGPRLIS 274
               KK  E + E+ E  RL  +L              V I     +L         + S
Sbjct: 238 GRSTKKAEEALCEWRE--RLQYELQSNESGYFKTKHKAVKIPADFPNLAALRSCVDPVTS 295

Query: 275 FLKALE 280
            LK ++
Sbjct: 296 SLKEMD 301


>gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 896

 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 22/156 (14%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
           +++V+  E      F   T  ++      + IA   + +      +   IFID       
Sbjct: 503 ERFVRHYEQDTLVVFDTETTGLNVLEDDIVQIAAVKIAKGKVLENERFEIFIDTKRPIPA 562

Query: 438 DSTG-KNTLTKEI--------LSYLKKFFE--NEHFLKIGHNIKYDKLVLHRYGISMRG- 485
                +N L +EI           L +F E  +   L +GHN  YD  +L+   +     
Sbjct: 563 MLGDIENPLIEEIKKHTLHTPAEALARFMEYIDGAML-VGHNATYDYQILYNNLLRYLPQ 621

Query: 486 ---------FEDIMLMSYVLDSGRSSHDIASIAQKW 512
                    + D + ++ +L     ++ + ++ Q++
Sbjct: 622 YTFLQKHSSYIDTLKLTRLLQPSLKNYKLKNLLQEF 657


>gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
           13280]
 gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
           13280]
          Length = 377

 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 67/194 (34%), Gaps = 31/194 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I   +D+  +  +     + +          +H+K   + ++T D+          +   
Sbjct: 3   ISTNEDLTAFCNRARAFSAIAIDTEFLREKTYHAKLCLVQVATPDE--------CVVIDP 54

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
           L++              + L  L +   +   LK+ H    D  VL H  G       D 
Sbjct: 55  LAI--------------DDLGPLAELMTDVDTLKVFHACSQDMEVLCHALGSVPAPIFDT 100

Query: 490 MLMSYVL--DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            + +  L   +  S H++ S      ++    + K+   +    +    +  E+A+++  
Sbjct: 101 QVAAGFLGERAQCSYHNLVS------TFCGVSLPKTESLTDWSRRPLSPKQIEYALDDVR 154

Query: 548 VILQLWLLLRPKLI 561
            ++  + ++  KL 
Sbjct: 155 YLIDAYRVIESKLH 168


>gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 40/176 (22%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID--------LSVHTSQDS-TGK 442
               T   DA   + + I    L     T  +               L+VH   D+    
Sbjct: 7   LDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQRPVSQGALAVHGLADAFLAD 66

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYG------ISMRGFEDIMLM 492
                 IL     F  +  F  + HN  +D   L     R G      I + G  D + +
Sbjct: 67  KPPFAAILPAFLDFCGDATF--VIHNAAFDVGFLNAEYARLGDAAPPAIDLAGVVDTLAL 124

Query: 493 SYVLDSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPI 530
           +       + +++ ++  ++                  L+    E+L  +++S+ +
Sbjct: 125 ARRKHPNAA-NNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELLGGKQTSLGL 179


>gi|124512300|ref|XP_001349283.1| exonuclease, putative [Plasmodium falciparum 3D7]
 gi|23499052|emb|CAD51132.1| exonuclease, putative [Plasmodium falciparum 3D7]
          Length = 406

 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRS 501
           + L   ++   +K  EN+  LK+ H+ + D   L+   G+ +    D      +L   + 
Sbjct: 143 DLLKTSVIKSAQKIIENKKTLKLIHDCREDSSALYNQLGMKLENVYDTSRAHLLLMEKQK 202

Query: 502 SHDI-----ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE-----HAIENSNVILQ 551
            +DI     A +   +L      +   +K     +KI +++        +A++N   + +
Sbjct: 203 KNDIYQVSFAQLINDYLGINDASLSFIKKEMYKNEKIWETRPLSNISIIYALKNVKYLYK 262

Query: 552 LWLLLRPKLIVEKLLH 567
           L+ +    L  + +L 
Sbjct: 263 LYKIFDKLLPKKLVLE 278


>gi|154301232|ref|XP_001551029.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
 gi|150856187|gb|EDN31379.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
          Length = 823

 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
             E+ + +   P+ + S T +   + + + +++L+     +  +                
Sbjct: 206 MYEKAEPIKYLPVESTSATFVDTYEGVLEMLEELKGATEIAVDLE--------------- 250

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                  D  S+      + +S              ++ L  L + F + + +K+ H   
Sbjct: 251 -----HHDTRSYVGLVSLMQVSTREKDWIVDTLKPWRQQLQVLNEVFADPNIIKVFHGAY 305

Query: 471 YDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
            D + L R  G+ + G  D       L  G +   +A + +K++     +    +K  + 
Sbjct: 306 MDIVWLQRDLGLYVVGLFDTHYACRRL--GFAGGSLAFLLKKYI-----DFDADKKYQLA 358

Query: 530 IDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +I     ++  +A  +++ +L ++  LR +L+ 
Sbjct: 359 DWRIRPLPEEMFFYARADTHFLLYIFDNLRNELLD 393


>gi|115525280|ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
 gi|115519227|gb|ABJ07211.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
          Length = 392

 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 453 LKKFFE---NEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LK FFE   +EH LK+ H  + D  +V HR GI      D  + + VL  G S      +
Sbjct: 62  LKPFFELMADEHVLKVFHAARQDIEIVWHRAGILPHPIFDTQVAAMVLGYGDSI-AYDQL 120

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            ++   +      K+ + +    +    +   +A+ +   +  ++  L   L    
Sbjct: 121 VERITGHRPD---KTHRFTDWSRRPLTEEQVHYAVSDVTHLRDVFAALDADLKKRG 173


>gi|302825645|ref|XP_002994421.1| hypothetical protein SELMODRAFT_432343 [Selaginella moellendorffii]
 gi|300137648|gb|EFJ04510.1| hypothetical protein SELMODRAFT_432343 [Selaginella moellendorffii]
          Length = 112

 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETARLSRKL 246
           + D +PG+PG    TA  L++++G+LEN++       + +   ++ + E++     + ++
Sbjct: 40  AADGVPGVPGF---TALKLMRKHGSLENLVSAAAIRTVVKPYMQDALKEHSVLLEKNLEV 96

Query: 247 VMLRTDVPITIPL 259
           + LR D+ + + L
Sbjct: 97  LSLRRDIDVELVL 109


>gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
 gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
          Length = 383

 Score = 46.2 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 64/202 (31%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N   +T I N +++ Q  Q      + +       +  ++ K   I +   ++     
Sbjct: 5   CQNQPHFTLIQNNEELAQVCQLARQQSAVALDTEFMRISTYYPKLGLIQLYDGERVSLID 64

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYG 480
               T F                          +   ++   KI H    D LV L  + 
Sbjct: 65  PLSITDFSP----------------------FVELLRDQQVTKILHACNEDLLVFLQEFD 102

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              +   D  +M+  L    +S  +A +   +L     E+ K    +  + +       +
Sbjct: 103 ALPQLMMDTQIMARFL-GFANSAGLAKLVLHYLGI---EMDKGATRTNWLKRPLSPVQLQ 158

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L ++  ++ +L  
Sbjct: 159 YAAGDVWYLLPVYQKMQIELAQ 180


>gi|254226821|ref|ZP_04920393.1| ribonuclease D [Vibrio cholerae V51]
 gi|125620668|gb|EAZ49030.1| ribonuclease D [Vibrio cholerae V51]
          Length = 381

 Score = 46.2 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLLERVTQAGWWE 185


>gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 466

 Score = 46.2 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 34/204 (16%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           + ++     A   I T        +   I I TL       ++             Q  T
Sbjct: 3   INEVSYPDLAFVDIETTGSHFDRDRITEIGIKTLANDGIQVWERLINPQTFIPQNIQRLT 62

Query: 441 G-------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMRG-FED 488
           G             ++   LK+  E    + + HN ++D         R GI  +     
Sbjct: 63  GISPQMVEGQPSFDQVAKELKQELE--GKIFVAHNARFDYGFIKASFKRVGIDFKPKVLC 120

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            + +S +L   +  H++ +I                              +  A+ ++++
Sbjct: 121 TVKLSRLLFPEQPRHNLDTIINAH--------------------GLQVSARHRALGDADL 160

Query: 549 ILQLWLLLRPKLIVEKLLHVYERL 572
           +LQ W +   K   EKL  V  +L
Sbjct: 161 LLQFWRVCEAKFGAEKLNEVINQL 184


>gi|67459201|ref|YP_246825.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004734|gb|AAY61660.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 281

 Score = 46.2 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 76/212 (35%), Gaps = 27/212 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N K ++++  KL      S     +    ++++      S +  K +    +    
Sbjct: 2   QIIDNQKTLEEFCNKLANKTCLSIDTEFERRYTYYAQL-----SIIQVKAEEYCGI---- 52

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFE 487
                         + L+   L+   K   + +  KI H  + D  + +    ++     
Sbjct: 53  -------------IDALSNLDLNIFNKLLADNNITKIFHAPREDLEIFYNLFKTLPSNVF 99

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + + +   G+       +  K +  T   I K+ + S  + +   S +  +A+ +  
Sbjct: 100 DIQIAANICGFGKQL-SYDDLCYKLIGIT---IDKTHQKSNWLKRPITSDMLNYAMLDVE 155

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            + +++  L   +I   L + Y+     ++DV
Sbjct: 156 YLYKIYKELNNIIIRNNLTNKYQTTLSSLLDV 187


>gi|332141837|ref|YP_004427575.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551859|gb|AEA98577.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
          Length = 385

 Score = 46.2 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 57/208 (27%), Gaps = 28/208 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I   + +++  +  +   + +                 I +               
Sbjct: 2   QYQLITTFEHLEKVCEAAQRQEAVALDTEFVRTKTLTPHLGLIQL--------------- 46

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG 485
                  +        + L  + +       EN   +K+ H+   D +  L  +      
Sbjct: 47  -------YDGHQLVLIDPLAIDNMQPFVALLENTEVVKVLHSCSEDLEAFLTAFDTVPTP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +   +LD G  S   A + +         + K    +  + +        +A  +
Sbjct: 100 VFDTQIAGSILDMG-PSLGYAKLVEL---LCEISLDKGESRTDWLARPLREAQLSYAAND 155

Query: 546 SNVILQLWLLLRPKLIVEKLLH-VYERL 572
              +L  +  L   +     +H +YE +
Sbjct: 156 VLYLLPCYQQLASNVQALGKVHWIYEEV 183


>gi|293334819|ref|NP_001169528.1| hypothetical protein LOC100383402 [Zea mays]
 gi|224029901|gb|ACN34026.1| unknown [Zea mays]
          Length = 638

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                +  G+P +  +G EA+            EG     I+ D D     + T      
Sbjct: 132 CVELLEYLGMPVLRAKG-EAE----ALCAQLNNEGHVGACITADSDAFLFGAKTVVKVLR 186

Query: 158 VKEEK----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
              ++      I  +    G+  +++V +  L G   D + G+PG G +TA   +Q + +
Sbjct: 187 SNCKEPFECYHIADIESGLGLKRKQLVAMALLIGSDHD-LHGVPGFGLETALRFVQLF-D 244

Query: 214 LENILINASRIKQKKR 229
            + IL     I +   
Sbjct: 245 EDEILDKLHEIGKGVY 260


>gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626]
 gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626]
          Length = 376

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 69/194 (35%), Gaps = 29/194 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I   +++  +  +   +   +          ++ K   + +ST ++              
Sbjct: 3   ISTQEELISFCLRAAHVPVLAVDTEFLREKTYYPKLCLVQVSTGEEIAAI---------- 52

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS--MRGFED 488
                       + L+ + LS L + FE++  +K+ H    D  VL  YG+        D
Sbjct: 53  ------------DPLSIDDLSPLVRLFEDQKIVKVIHACSQDLEVLL-YGMHCACAPVFD 99

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L +  L   + +   AS+ + ++      + K+   +    +  D +   +A ++   
Sbjct: 100 TQLAAAFLGMRQQA-SYASVVEHYMGVH---LPKTESLTDWSRRPLDPEQLVYAEDDVRY 155

Query: 549 ILQLWLLLRPKLIV 562
           +  ++  +  +L+ 
Sbjct: 156 LPDIYRCMYERLMK 169


>gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
 gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 378

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET-IFIDLSVHTSQDSTGK 442
                     + T        +   I +  +     +++         +     Q +   
Sbjct: 11  ASEQPLVFVDLETTGGSPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGIS 70

Query: 443 NTLTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
           + + ++    + L    FE  +  L + HN  +D+  L     R G +        + +S
Sbjct: 71  DEMVRDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLS 130

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    + H + ++ ++                +P         +  A+ +++++LQ W
Sbjct: 131 RALFPRETRHGLDALIERH-------------GLVP-------AARHRALADADLLLQFW 170

Query: 554 LLLRPKLIVEKLLH 567
            LL   + +E+L  
Sbjct: 171 RLLHDIVPLERLRD 184


>gi|1389577|dbj|BAA03813.1| ERCC5 [Mus musculus]
          Length = 1170

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 27/186 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 772 QELLRLFGVPYIQAP-MEAEAQCAMLDLSDQTSGT----ITDDSDIWLFGARHVYKNFFN 826

Query: 159 KEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           K + ++    +  +   G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 827 KNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGRG 884

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED--CNGPR 271
           L+ +L                E+   A+ ++K+     D  +   L  L L     N   
Sbjct: 885 LDPLL-------------KFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAV 931

Query: 272 LISFLK 277
             ++L+
Sbjct: 932 ADAYLR 937


>gi|84517066|ref|ZP_01004422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
 gi|84508961|gb|EAQ05422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
          Length = 385

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 65/195 (33%), Gaps = 22/195 (11%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T D+  +  +       +          ++SK   + ++  D   + +  V+ + 
Sbjct: 2   KIISTTADLAAFCTQAAKRAYVTVDTEFLRERTYYSKLCLVQMAYRDAAGEDAVLVDPLA 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
             +S                 L  L   F +   +K+ H  + D  + H   G+      
Sbjct: 62  EGIS-----------------LDPLYDLFRDPGVVKVFHAARQDLEIFHVDAGVIPAPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V   G  +    ++ +K     + E+ KS + +    +       E+A+ +  
Sbjct: 105 DTQVAAMVCGFGEQA-GYETLVRK---IAKAEVDKSSRFTDWSRRPLTDAQAEYALADVT 160

Query: 548 VILQLWLLLRPKLIV 562
            +  ++  L  +L  
Sbjct: 161 HLRDVYEYLANRLAK 175


>gi|302845188|ref|XP_002954133.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
           nagariensis]
 gi|300260632|gb|EFJ44850.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
           nagariensis]
          Length = 254

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 33/204 (16%)

Query: 36  NA-IAGFCNMLWKLL-QNSRKESIASHFAVIFDYPAVT-FRNE-----IYPDYKAN--RP 85
           NA + GF   + +LL    R          +FD       R+         + +    R 
Sbjct: 14  NAHLLGFFRRICRLLFHRVRP-------VFVFDGATPALKRHTNIARRRRREAQQGVLRK 66

Query: 86  KIPEMLLPQLPLVRLATQAFG----IPAIEIQGFEADDIIATYTYIAEKEGFAVT----- 136
              ++L+ QL   R           IP    +G     +       A+     V+     
Sbjct: 67  TAEKLLIAQLKKQRNVGMPLKLNVAIPLAAFKGVPT--VSEPAAAEAQCAFLEVSGLVDG 124

Query: 137 IISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNI 193
           +++ D D+    +     +    +   E+  +  V ++ G+  E++  +  L G   D  
Sbjct: 125 VVTDDNDVFLFGARHVYRHIFENKKYVEEYQMSDVERELGLTRERLAEMALLLG--SDYT 182

Query: 194 PGIPGIGYKTAALLLQEYGNLENI 217
            G  GIG   A  ++Q +  LE +
Sbjct: 183 EGCGGIGIVNAVEVVQAFPGLEGL 206


>gi|189182142|gb|ACD81847.1| LD13130p [Drosophila melanogaster]
          Length = 930

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 79/219 (36%), Gaps = 27/219 (12%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P +   ++ + +    +       +   + ++Q +++L      +  +   +   F    
Sbjct: 280 PPEEQFQKQKPVLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHSYRTF---- 335

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             + I+ L Q                   S+D      + ++ +  L     +   LKI 
Sbjct: 336 --MGITCLVQMST---------------RSKDYIFDTLILRDDMHILNLVLTDPKKLKIL 378

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D   L R   + +    D    +  L+  R S  +A + + +L     ++ KS +
Sbjct: 379 HGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLS--LAYLLKHYLDL---DVDKSLQ 433

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +    +    Q+ ++A ++++ ++ ++  +   L+ + 
Sbjct: 434 LADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQH 472


>gi|119476222|ref|ZP_01616573.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
 gi|119450086|gb|EAW31321.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
          Length = 384

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 60/200 (30%), Gaps = 27/200 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I + + ++++  + +     +        D F+  PI   +   +               
Sbjct: 16  IDDNETLRKFCLQWQHAAVLALDTEFIRTDTFY--PIGALLQISEGTGCFLI-------- 65

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                       + L+ +  S L     +   +K+ H+   D  V  R + +  +   D 
Sbjct: 66  ------------DPLSIDDFSPLTALLTDPAIVKVLHSCSEDLEVFERLFQVLPQPLIDT 113

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + +  LD    S     + +  L      + K    S  + +        +A  +   +
Sbjct: 114 QIAA-GLDGYGFSLGYQKMTEALLQIH---VAKGETRSNWLQRPLTESQIHYAALDVAYL 169

Query: 550 LQLWLLLRPKLIVEKLLHVY 569
            +++  L+  L  +      
Sbjct: 170 PEMYQQLKQSLESKGRWQWL 189


>gi|254522754|ref|ZP_05134809.1| ribonuclease D [Stenotrophomonas sp. SKA14]
 gi|219720345|gb|EED38870.1| ribonuclease D [Stenotrophomonas sp. SKA14]
          Length = 359

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 61/191 (31%), Gaps = 9/191 (4%)

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
                 +    F  +P  I + T   ++ T +    +   + +   +D    + L   + 
Sbjct: 4   WITTPAELDAYFQQRPSRIGLDTEFIRERTFWPQLAL---VQMAVGRDILLIDPLIPGMT 60

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             L  +  +E  +K+ H+   D +      G+  R   D  + +  L           + 
Sbjct: 61  EALAPWLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGA-SLAGIGGGMGYQKLV 119

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHV 568
            +        + K    S  + +       ++A ++   +  L   +  +L        +
Sbjct: 120 AEITGVA---LAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIGARLQALGRQQWL 176

Query: 569 YERLDKPMIDV 579
           ++  ++ +  V
Sbjct: 177 HDDGERLLASV 187


>gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar]
 gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar]
          Length = 885

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 67/195 (34%), Gaps = 31/195 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I N +D+    +KL      +  +   +  +F      + IST D               
Sbjct: 290 IDNLEDLVAVNEKLTKTSEFAVDLEHHSYRSFLGITCLMQISTRD--------------- 334

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                 +D        +  L  L + F +   +K+ H    D   L +  G+ +    D 
Sbjct: 335 ------EDFIIDTLELRSELYILNEAFTDPAIVKVFHGADSDIEWLQKDLGLYIVNMFDT 388

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSN 547
              S  L+     H +  + + + +     +   ++  +   +I     ++ ++A  +++
Sbjct: 389 HQASRTLN--LGRHSLDHLLKLFCN-----VDSDKRYQLADWRIRPLPDEMFQYARADTH 441

Query: 548 VILQLWLLLRPKLIV 562
            +L ++  LR  L  
Sbjct: 442 YLLYVYDRLRVDLWE 456


>gi|157964642|ref|YP_001499466.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844418|gb|ABV84919.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 284

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 75/212 (35%), Gaps = 27/212 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N K +++   +L      S     +    ++++      S +  K +    +    
Sbjct: 5   QIIDNQKTLEELCNRLANKACLSIDTEFERRYTYYAQL-----SIIQVKAEEYCGI---- 55

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFE 487
                         + L+   L+   K   + +  KI H  + D  + +    ++     
Sbjct: 56  -------------IDALSNLDLNIFNKLLADNNITKIFHAPREDLEIFYNLFKTLPANVF 102

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + + +   G+       +  K +  T   I K+ + S  + +   S +  +A+ +  
Sbjct: 103 DIQIAANICGFGKQL-SYDDLCYKLIGIT---IDKTHQKSNWLKRPITSDMLNYAMLDVE 158

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            + +++  L   +I   L + Y+     ++DV
Sbjct: 159 YLYKIYKELNNIIIRNNLTNKYQTTLSSLLDV 190


>gi|241955293|ref|XP_002420367.1| exodeoxyribonuclease, putative [Candida dubliniensis CD36]
 gi|223643709|emb|CAX41445.1| exodeoxyribonuclease, putative [Candida dubliniensis CD36]
          Length = 715

 Score = 46.2 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 36/194 (18%)

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM---------QLVSPTT 152
                I  I    +EAD  +     +   +G    I+S D DL+         +L    T
Sbjct: 137 LDNLSIKYIVAP-YEADPQMVYLEKMGVVDG----ILSEDSDLLIFGCKKLITKLKDDGT 191

Query: 153 CLYDTV-KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
           C+     K +K+     + ++    E++  +  L+G   D   G+PGIG +TA  L+++Y
Sbjct: 192 CVEINRDKFDKVKEIPYLNQYN--MEQLRLVAMLSG--CDYTKGVPGIGLRTAFQLVRKY 247

Query: 212 GNLENILINASRIKQKKRRENILEYAETARL-----------SRKLVMLRTDVPITIPLE 260
            N   +LI    +  KK  +N ++  + A L           ++KL  L        P  
Sbjct: 248 NNFTKVLIALRSM-GKKIPDNFIDEVKLANLAFQFQKVFDPTNQKLTTLN-----EYPQN 301

Query: 261 HLILEDCNGPRLIS 274
           +  ++D +   L+ 
Sbjct: 302 NREVDDYDDETLLE 315


>gi|83942499|ref|ZP_00954960.1| ribonuclease D [Sulfitobacter sp. EE-36]
 gi|83846592|gb|EAP84468.1| ribonuclease D [Sulfitobacter sp. EE-36]
          Length = 385

 Score = 46.2 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 23/212 (10%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T +++ +  +       +          ++SK   I ++     D  +  V+ + 
Sbjct: 2   KTITTTAELEAYCTEAAKHDYVTVDTEFLRERTYYSKLCLIQLAMPGTDDSNAVLVDPLS 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
             LS                 L  L   F +   +K+ H  + D  + +   G+      
Sbjct: 62  EGLS-----------------LDPLYTLFRDTSVVKVFHAARQDLEIFYVDAGVFPEPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V   G       ++ +K       +   SR +      +SD+Q  ++A+ +  
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVRKIAHQPLDKT--SRFTDWSRRPLSDAQA-KYALADVT 160

Query: 548 VILQLWLLLRPKLIVEK-LLHVYERLDKPMID 578
            + Q++  L  KL        V E L+     
Sbjct: 161 HLRQIYEFLARKLEQTGRARWVQEELEILTSP 192


>gi|38707869|ref|NP_944975.1| Putative exodeoxyribonuclease [Enterobacteria phage Felix 01]
 gi|33340472|gb|AAQ14823.1| putative exodeoxyribonuclease [Enterobacteria phage Felix 01]
          Length = 348

 Score = 46.2 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 62/167 (37%), Gaps = 24/167 (14%)

Query: 79  DYKANRPK--IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT 136
            Y+ NR     P  L+      R    +     + + GFEAD I+      AEK G    
Sbjct: 135 QYQGNRKDAVTPTHLVA----CREYLLSRPEFKLILDGFEADSIV---IAKAEKMGKKAA 187

Query: 137 IISTDKDLMQLVSPTTCLYDTVKEEKIDIEH--VIKKWGIPPE-------------KMVC 181
           ++S DKDL Q            K   I I    V + W  P +             K +C
Sbjct: 188 LMSIDKDLRQAEGTYCIDMTYEKSPLIFIADNNVGEIWDCPIKSTPKAKKTVGVGFKFLC 247

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            QA+ GD+ DN  G+ G+G  T    L+     +  L     +  KK
Sbjct: 248 YQAVAGDNADNYFGLKGVGKVTIMKALEGKTTYKECLDAIYELYAKK 294


>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
 gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
          Length = 1431

 Score = 46.2 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 26/222 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           Q+LE      F + T  + A ++K I + A+   D      F+       L   T+ D T
Sbjct: 407 QELEKATFVVFDVETTGLSAMYNKIIELAAVKIYDGDVIDKFEAFADPKHLLSATTIDLT 466

Query: 441 G-------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFE 487
           G            ++++     +      + + HN  +D   L+       +  S     
Sbjct: 467 GITDEMVRGKPDPEQVVKEFMDW--AGGSILVAHNASFDIGFLNATLRSGNHEESTLPVI 524

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D + ++ VL     +H + ++A+++      E+ +          I D++   + +    
Sbjct: 525 DTLELARVLMPSLKNHRLNTLAKRF----DIELTQ------HHRAIYDAEATGYLMLKLL 574

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            +      ++  L + + +       +P    V     TG++
Sbjct: 575 QMADEMFNMKTHLSLNREMGKDISRARPYHATVYAKNRTGLK 616


>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
 gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
          Length = 383

 Score = 46.2 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 29/204 (14%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
             N +Y  I +   +    Q L T  + +          ++     + I+  +       
Sbjct: 13  APNITYQWIDSDVALADLCQSLSTQSAIALDTEFVRTRTYYPHIGLLQIADENGV----- 67

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGI 481
               +   L++  +Q               +    +N   +K+ H    D  V  + +G+
Sbjct: 68  ---YLIDPLAISDTQP--------------MADVLQNPAIVKVVHACSEDLEVFQYAFGV 110

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIA-SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                 D  + +     G + +  +   A       R +I K    S  + +        
Sbjct: 111 LPESLFDTQVAA-----GFAGYGSSIGYANLLREIKRIDIPKQETRSDWLQRPLSDAQLR 165

Query: 541 HAIENSNVILQLWLLLRPKLIVEK 564
           +A  +   +L+++  L  KL  ++
Sbjct: 166 YAALDVEYLLEIYRGLVEKLQQQQ 189


>gi|194900862|ref|XP_001979974.1| GG21034 [Drosophila erecta]
 gi|190651677|gb|EDV48932.1| GG21034 [Drosophila erecta]
          Length = 900

 Score = 46.2 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 81/219 (36%), Gaps = 27/219 (12%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P    L++ + +    + +     +   + +QQ +++L      +  +   +   F    
Sbjct: 250 PLADQLQKQKPVLPALMADTELMVVDTVEKLQQALEELRQAPQIAIDVEHHSYRTF---- 305

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             + I+ L Q                   S+D      + +E +  L     +   LKI 
Sbjct: 306 --MGITCLVQMST---------------RSKDYIFDTLILREDMHILNLVLTDPKKLKIL 348

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D   L R   + +    D    +  L+  R S  +A + + +L     ++ KS +
Sbjct: 349 HGADLDIEWLQRDLSLYIVNMFDTHRAAKALNLARLS--LAYLLKYYLDL---DVDKSLQ 403

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +    +    Q+ ++A ++++ ++ ++  +   L+ ++
Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLQQQ 442


>gi|83953718|ref|ZP_00962439.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
 gi|83841663|gb|EAP80832.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
          Length = 385

 Score = 46.2 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 23/212 (10%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T +++ +  +       +          ++SK   I ++     D  +  V+ + 
Sbjct: 2   KTITTTAELEAYCTEAAKHDYVTVDTEFLRERTYYSKLCLIQLAMPGTDDSNAVLVDPLS 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
             LS                 L  L   F +   +K+ H  + D  + +   G+      
Sbjct: 62  EGLS-----------------LDPLYTLFRDTSVVKVFHAARQDLEIFYVDAGVFPEPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V   G       ++ +K       +   SR +      +SD+Q  ++A+ +  
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVRKIAHQPLDKT--SRFTDWSRRPLSDAQA-KYALADVT 160

Query: 548 VILQLWLLLRPKLIVEK-LLHVYERLDKPMID 578
            + Q++  L  KL        V E L+     
Sbjct: 161 HLRQIYEFLARKLEQTGRARWVQEELEILTSP 192


>gi|161078302|ref|NP_001097795.1| Rrp6 [Drosophila melanogaster]
 gi|158030263|gb|AAF55107.3| Rrp6 [Drosophila melanogaster]
          Length = 900

 Score = 46.2 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 79/219 (36%), Gaps = 27/219 (12%)

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           P +   ++ + +    +       +   + ++Q +++L      +  +   +   F    
Sbjct: 250 PPEEQFQKQKPVLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHSYRTF---- 305

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
             + I+ L Q                   S+D      + ++ +  L     +   LKI 
Sbjct: 306 --MGITCLVQMST---------------RSKDYIFDTLILRDDMHILNLVLTDPKKLKIL 348

Query: 467 HNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           H    D   L R   + +    D    +  L+  R S  +A + + +L     ++ KS +
Sbjct: 349 HGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLS--LAYLLKHYLDL---DVDKSLQ 403

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +    +    Q+ ++A ++++ ++ ++  +   L+ + 
Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQH 442


>gi|261402763|ref|YP_003246987.1| flap structure-specific endonuclease [Methanocaldococcus vulcanius
           M7]
 gi|261369756|gb|ACX72505.1| flap structure-specific endonuclease [Methanocaldococcus vulcanius
           M7]
          Length = 326

 Score = 46.2 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 31/183 (16%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +      GIP +     E +   +         G    ++S D D +   +P      T
Sbjct: 135 CKYLLGLMGIPYVNAPS-EGEAQASYMAKK----GDVWAVVSQDYDSLLYGAPRVVRNLT 189

Query: 158 VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQEYGN 213
             +E    I+++ V+++  I  + ++ +  L G   D  P G+ GIG+K A  L++    
Sbjct: 190 TTKEMPELINLDDVLEELRISLDDLIDIAILMG--TDYNPGGVKGIGFKRAYELVK---- 243

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273
                   S + +   ++ +  Y E  ++ ++        P       + L   N   +I
Sbjct: 244 --------SGVAKDVLKKEVENYEEIRKIFKE--------PKITDEYSVNLRLPNKEGII 287

Query: 274 SFL 276
            FL
Sbjct: 288 KFL 290


>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
 gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
          Length = 1443

 Score = 46.2 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 78/228 (34%), Gaps = 44/228 (19%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF----IDLSVHTSQD 438
           KL+      F I T  +   +     I  + +  K +   +    F      L    ++ 
Sbjct: 402 KLKDATFVIFDIETTGLHGRYDSV--IEFAGIKVKHNREVERMQFFLKIDGPLPAAVTEI 459

Query: 439 STGKNTLTKEI------LSYLKKFFENEHFLKIGHN-IKYDKLVLH----RYGISM--RG 485
           +       ++       L  L+ +   +  + + HN + +D   L     +Y I+     
Sbjct: 460 TKITQAQLEDGMEQQAGLEKLRAWL--DGCVMVAHNGLSFDLPFLQTQFEKYNIAPLTNP 517

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D + +S+ L+ G +SH +++I                K     D     +    A  +
Sbjct: 518 LIDTLALSWALNPGFASHTLSNIC--------------AKLKFDFDD----ERLHRADYD 559

Query: 546 SNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEI--TGI 588
           +  + +++   + ++ +     L  + + L++     + +     TGI
Sbjct: 560 TQALKKVFDYFKEQVELMGITNLEQLDQELNQQCHFELLKRTFTNTGI 607


>gi|307295006|ref|ZP_07574848.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
 gi|306879480|gb|EFN10698.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
          Length = 388

 Score = 46.2 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 68/192 (35%), Gaps = 25/192 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I ++K +  +  ++      +        +++      + ++  D+ +  +   +   +
Sbjct: 6   LITDSKTLASFCARIAKSPYIAIDTEFMRENSYWPDLCLVQVA--DEHEAAAIDPKAPGL 63

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFED 488
           DLS                    L    +NE  LK+ H    D  +++   G +     D
Sbjct: 64  DLSP------------------LLDLMVDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFD 105

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + +  L  G       ++   WL     ++ K  + +    +  D +  ++AI +   
Sbjct: 106 TQIAAMALGLGEQI-GYGNLVDAWLGV---QLDKGARFTDWARRPLDKRQIDYAIGDVTY 161

Query: 549 ILQLWLLLRPKL 560
           ++Q++  +  +L
Sbjct: 162 LIQIFPKMLEEL 173


>gi|194743424|ref|XP_001954200.1| GF18156 [Drosophila ananassae]
 gi|190627237|gb|EDV42761.1| GF18156 [Drosophila ananassae]
          Length = 586

 Score = 46.2 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 4/138 (2%)

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
           LS H    +  +    K+I   L++  E++  +K+G   + D + L H YG+ +    D 
Sbjct: 101 LSSHQGLCALFRLCHMKQIPKDLRELLEDDAVIKVGVAPQEDAMKLSHDYGVGVASTLD- 159

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            L    + +G     +  ++ + L Y   +  +   S+    ++   Q+  +A  ++ V 
Sbjct: 160 -LRFLCVMAGHKPEGLGKLSFRHLDYPLDKNWRLACSNWEAKQLEPPQL-NYAANDALVA 217

Query: 550 LQLWLLLRPKLIVEKLLH 567
           + ++  L   L       
Sbjct: 218 VAIYEKLCRDLEPRHFWD 235


>gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 249

 Score = 46.2 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 36/262 (13%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS-------- 432
           +  +E          T  +D    + I +A+   D     +     I  +          
Sbjct: 1   MPDIEKNKFICIDCETTGLDPQQDRIIEVAVMCFDGNQVYAQMESLINPECPIPETSIAI 60

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMR---- 484
            H +QD          +L  + +   +   + IGH + +D  +L     R+GI  +    
Sbjct: 61  HHITQDMVKDKPTINHVLPQILELISD--HIIIGHGVGFDIEILAVAAERHGIPCKIRKN 118

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
            F D + M+ +      +      + ++L       L+    ++  D I + +V +H  +
Sbjct: 119 RFLDTLRMARLYGESPVN------SLEYLRKHFNIPLEGAHRAMS-DVIVNKEVFKHLSK 171

Query: 545 NSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
                 QL+ +L   +++  + L  ++      I +     +     DQDLL  V  E+ 
Sbjct: 172 RYRTTEQLFEVLSKPILMNTMPLGKHKGRLLKEIPLQYLQWVCNKDFDQDLLFSVRTELK 231

Query: 604 KNLLSLEENIYDLSGEKFNLSS 625
           +             G +FN SS
Sbjct: 232 RR----------KHGNQFNQSS 243


>gi|91977418|ref|YP_570077.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
 gi|91683874|gb|ABE40176.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
          Length = 392

 Score = 46.2 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 9/131 (6%)

Query: 453 LKKFF---ENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LK FF    NE+ LK+ H  + D  +V HR GI      D  + + VL  G S      +
Sbjct: 62  LKPFFDLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYGDSI-AYDQL 120

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLH 567
            ++   +   +    R +      ++D Q+  +A+ +   +  ++  L   L   ++   
Sbjct: 121 VERITGHRPDKTH--RFTDWSRRPLTDEQL-HYAVSDVTHLRDVFAALDADLKKRDRSDW 177

Query: 568 VYERLDKPMID 578
           V E ++     
Sbjct: 178 VSEEMEILTSP 188


>gi|307198047|gb|EFN79100.1| Exonuclease 3'-5' domain-like-containing protein 1 [Harpegnathos
           saltator]
          Length = 831

 Score = 46.2 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 117/349 (33%), Gaps = 31/349 (8%)

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
           I P  +  +  EN       + +      T      S+  S   S Q            +
Sbjct: 302 IPPSKIQFSQPENVCNNATAQPNSLQNAYTPPPVVESNNNSPPVSLQQQTLKQRINTLVM 361

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSA------SFKIITDTMDAFHSKPIA-IAI 411
                N +    +   +    W  K+            S +II D ++         + I
Sbjct: 362 KTLADNTERDRSLQTAQMGDAWKLKVLQQTRVIATPRDSLQIIEDIINPRKPPLDGKVVI 421

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY--LKKFFENEHFLKIGHNI 469
           S   +  +   K +   + +   + Q           ++    L+K  E+++ +K+ H+ 
Sbjct: 422 SFDCEGINLGVKGQLTLVQIGTMSGQAYVFDLFTCPSLVQAGGLQKLLEHKNVVKVIHDC 481

Query: 470 KYDKLVLHR-YGISMRGFEDIMLMSYVL---DSGRSSH-----DIASIAQKW------LS 514
           + D + L+  + I +    D      VL   ++G+  +     ++ ++   +      L 
Sbjct: 482 RNDSVNLYNQFKIMLTNVFDTQAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPCNPLK 541

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE------KLLHV 568
              K I +  +       ++   +   + +  +++ Q++  +   +  E      +L   
Sbjct: 542 EQLKNIYRKDQRYWSRRPMTRDMLIYASSDVLSLVPQVYNAMSRLIKPEIQGLFAELCEE 601

Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLL-KQVSAEISKNLLSLEENIYDL 616
             ++     +V ++ +   ++ +   L K++    SKN++     I  L
Sbjct: 602 QIQMHIRPAEVKARKKQRKVETEVADLKKRMEEATSKNIVLSNREIRLL 650


>gi|74141263|dbj|BAE35937.1| unnamed protein product [Mus musculus]
          Length = 898

 Score = 46.2 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 52/226 (23%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 669 QELLRLFGVPYIQAP-MEAEAQCAMLDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 723

Query: 159 KEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           K + ++    +  +   G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 724 KNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGRG 781

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED------- 266
           L+ +L                E+   A+ ++K+     D  +   L  L L         
Sbjct: 782 LDPLL-------------KFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAV 828

Query: 267 --------------------CNGPRLISFLKALEFTKLINRVATTY 292
                                +  ++  F +       +    + Y
Sbjct: 829 ADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLY 874


>gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057]
          Length = 1462

 Score = 46.2 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 64/168 (38%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +  + +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGYPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 179

 Score = 46.2 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL- 450
           F   T     F S    + ++ +D    T   V+ ++  +  +   D+   N ++  ++ 
Sbjct: 8   FDTETTG---FRSDDEVLTLAVVDGAGAT--VVDGMYAPVRKNAWPDAEKINRISPAMVV 62

Query: 451 ---------SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF--EDIMLM 492
                    + L++ F +   L +G+NI++D  +L + GI ++     D+ML 
Sbjct: 63  NCPPILAQQAELERMFNDPETLLVGYNIEFDIRLLAQSGIRIQNPNRHDVMLA 115


>gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
           25986]
 gi|133776892|gb|EBA40712.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
           25986]
          Length = 377

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I   + +  + Q+     + +          FH +   + I+T                 
Sbjct: 3   ISTHQALLDFCQRAREFDAIAVDTEFLRERTFHPRLCLVQIATPA--------------- 47

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYGISMRGFEDI 489
                  +S   + L  + LS L +   +E   K+ H    D  V LH  G+  R   D 
Sbjct: 48  -------ESVAVDPLVIDDLSPLAELMADESVTKVFHACSQDMEVMLHTVGVLPRPIFDT 100

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            + +  L   +      ++ Q +        + +    +  +   +I      E+AI++ 
Sbjct: 101 QVAAAFLGERQQI-SYGALVQTFCGVSLPKTESLTDWSRRPLTDKQI------EYAIDDV 153

Query: 547 NVILQLWLLLRPKLIV 562
             ++  +  +  +L  
Sbjct: 154 KYLIVAYTEMMSRLRE 169


>gi|159044436|ref|YP_001533230.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12]
 gi|157912196|gb|ABV93629.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12]
          Length = 385

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 35/336 (10%), Positives = 106/336 (31%), Gaps = 34/336 (10%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            + +T  +  +  +       +          +++K   + ++   + ++T+  V+ +  
Sbjct: 3   TLTDTAALADFCARAAEHDYVTVDTEFLRERTYYAKLCLVQLAYPGEGEETAVLVDPLAE 62

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
            +S                 L+ +   F N   +K+ H  + D  +    +G+      D
Sbjct: 63  GMS-----------------LAPMLDLFRNPDVVKVFHAARQDLEIFFVEHGVFPEPLFD 105

Query: 489 IMLMSYVLDSGR-----------SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
             + + V   G            +   +   + ++  ++ + + K++K     D      
Sbjct: 106 TQVAAMVCGFGEQVGYETLVRKIARESLDKTS-RFTDWSHRPLSKAQKKYALADVTHLRV 164

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVY-ERLDKPMIDVVSQMEITGIQIDQDLLK 596
           + E+     +   +   +   +L       +Y    D+    V ++            L 
Sbjct: 165 IYEYLAAAIDKTGRRAWV-EEELQGLLDPEIYVVDPDEAWRRVKTRTNSGKFLSTVRALA 223

Query: 597 QVSAEISKNLLSLEENIY-DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA- 654
           +     ++        ++ D +  +   + P+ + D+  ++L      + +  +    A 
Sbjct: 224 RFRETFAQGRNIPRSRVFKDDALLELASTKPQSVQDLGRSRLLLREARRGEIAEGILAAV 283

Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690
            + +     D P I    E  Q++   +     L  
Sbjct: 284 AEGQATEPEDYPEIDRSREKLQVNTALADLLRVLLK 319


>gi|56551610|ref|YP_162449.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761264|ref|ZP_04759352.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752797|ref|YP_003225690.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543184|gb|AAV89338.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374171|gb|EER63668.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552160|gb|ACV75106.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 390

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 69/196 (35%), Gaps = 25/196 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I ++  +     +L      +        +++  +   I I+  D K+  +       +
Sbjct: 6   LITDSATLAALCSRLSRADFIAIDTEFIRENSYWPELCLIQIA--DDKEAAAIDPLAPGL 63

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFED 488
           D++  T                       NE  LK+ H    D +++LH  G       D
Sbjct: 64  DMTPLTDL------------------LVNNEDILKVFHAGGQDLEIILHHTGKMPFPLFD 105

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + +  L  G      +++ +++LS     + K  + +    +  D +  ++AI +   
Sbjct: 106 TQIAAMALGVGEQV-GYSNLVERYLSIK---LDKGARFTDWSHRPLDRRQLDYAIADVTH 161

Query: 549 ILQLWLLLRPKLIVEK 564
           +  L+ +L  +L  + 
Sbjct: 162 LATLFPMLLKELRDKG 177


>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           pneumoniae FH]
          Length = 1443

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 78/228 (34%), Gaps = 44/228 (19%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF----IDLSVHTSQD 438
           KL+      F I T  +   +     I  + +  K +   +    F      L    ++ 
Sbjct: 402 KLKDATFVIFDIETTGLHGRYDSV--IEFAGIKVKHNREVERMQFFLKIDGPLPAAVTEI 459

Query: 439 STGKNTLTKEI------LSYLKKFFENEHFLKIGHN-IKYDKLVLH----RYGISM--RG 485
           +       ++       L  L+ +   +  + + HN + +D   L     +Y I+     
Sbjct: 460 TKITQAQLEDGMEQQAGLEKLRAWL--DGCVMVAHNGLSFDLPFLQTQFEKYNIAPLTNP 517

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D + +S+ L+ G +SH +++I                K     D     +    A  +
Sbjct: 518 LIDTLALSWALNPGFASHTLSNIC--------------AKLKFDFDD----ERLHRADYD 559

Query: 546 SNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEI--TGI 588
           +  + +++   + ++ +     L  + + L++     + +     TGI
Sbjct: 560 TQALKKVFDYFKEQVELMGITNLEQLDQELNQQCHFELLKRTFTNTGI 607


>gi|302697639|ref|XP_003038498.1| hypothetical protein SCHCODRAFT_103723 [Schizophyllum commune H4-8]
 gi|300112195|gb|EFJ03596.1| hypothetical protein SCHCODRAFT_103723 [Schizophyllum commune H4-8]
          Length = 644

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSG--RSSHDIA- 506
             L+   E+    K G  I  D   L+R +GISM    D+ LM+  +D+   +  +    
Sbjct: 102 EQLRLLLEDPSVAKTGVGISGDAQKLYRDHGISMSNVVDLGLMTRSVDNANWKGPYSSPI 161

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISD-SQVQEHAIENSNVILQLWLLLRPKL 560
            +A+    Y ++E+ K R S    +K+    + +++A  +++    L+  LR  L
Sbjct: 162 GLARLIDFYEKRELRKGRISRSNWEKVPLSDEQKQYAANDAHCAWVLYGRLRTLL 216


>gi|294013278|ref|YP_003546738.1| ribonuclease D [Sphingobium japonicum UT26S]
 gi|292676608|dbj|BAI98126.1| ribonuclease D [Sphingobium japonicum UT26S]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 73/206 (35%), Gaps = 25/206 (12%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
              ++   +   +  I ++K + Q+  ++      +        +++      + ++  D
Sbjct: 5   PAHNKIEDHMQIHPLITDSKTLAQFCARIAKSPYIAVDTEFMRENSYWPDLCLVQVA--D 62

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           + +  +   +   +DLS                    L    +NE  LK+ H    D  +
Sbjct: 63  EHEAAAIDPKAPGLDLSP------------------LLDLMVDNEDVLKVFHAGGQDLEI 104

Query: 476 LHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           ++   G +     D  + +  L  G       ++   WL     ++ K  + +    +  
Sbjct: 105 IYNLTGKTPHPLFDTQIAAMALGLGEQI-GYGNLVDAWLGV---QLDKGARFTDWARRPL 160

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKL 560
           D +  ++AI +   ++Q++  +  +L
Sbjct: 161 DKRQIDYAIGDVTYLIQIFPKMLEEL 186


>gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
 gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
          Length = 1447

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 17/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK---------VETIFIDLSVH 434
           L+      F I T  +   + + I    + +      S +         +    I+L+  
Sbjct: 411 LKEQEYVCFDIETTGLSPRYHELIEFGATIIKNGSVISREQFFIKAKNSLSAFTINLTGI 470

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL------HRYGISMRGFED 488
           T Q    +    K  L  + K FEN   + + HN  +D   L      ++  I    F D
Sbjct: 471 TDQMLKNEGLELKPALLKISKLFEN--RIAVAHNSTFDMNFLFQKFLDNKMEIPKTTFID 528

Query: 489 IMLMSYVLDSGRSSHDIASIAQK 511
            +++S +L S  S H + +   +
Sbjct: 529 TLVVSRLLFSKDSKHRLENYVGR 551


>gi|291242835|ref|XP_002741315.1| PREDICTED: flap endonuclease 1-like [Saccoglossus kowalevskii]
          Length = 334

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 75  EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
           E  P  +  R K       Q    +      G+P I+  G EA+ + A        +G  
Sbjct: 98  EKKPGMQRTRLKT-----LQYECCK-LLDVLGVPYIQATG-EAEAMCALLNKEGLVDG-- 148

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189
             + + D D     +       T        +  D+  + +K  +   K++ +  L G  
Sbjct: 149 --VFTEDGDAFLYGAKKVYKNLTAGSNGSHVDVYDMLDIEEKLTLNRNKLIAMALLMG-- 204

Query: 190 IDNIP-GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231
            D +  G+P +G   A  L+   G+++ +L       Q+K ++
Sbjct: 205 CDYLSDGVPSVGKTNATQLMHSLGDID-VLERFHEWTQEKSQD 246


>gi|238762951|ref|ZP_04623918.1| Ribonuclease D [Yersinia kristensenii ATCC 33638]
 gi|238698709|gb|EEP91459.1| Ribonuclease D [Yersinia kristensenii ATCC 33638]
          Length = 373

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +QQ  ++  T    +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITTDSALQQVCEQARTYAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         ++  ++ + +K  H    D  V    + I    
Sbjct: 62  QWQP----------------------FRELLQDLNVVKYLHAGSEDLEVFLNAFDIMPTP 99

Query: 486 FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SGR+ S   A +  ++      E+ KS   +  I +    +  ++A  
Sbjct: 100 MIDTQVLA--AFSGRTLSCGFAMLVNEFEGV---ELDKSESRTDWIARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L L   L
Sbjct: 155 DVFYLLPLATKL 166


>gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973195|gb|EED91526.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 181

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 9/152 (5%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQ--DSTGKNTLTKEIL-SYLKKFFENEHFLKIGHNIK 470
           L+     +F      I LS+H S   D        + ++ + L     N + LK+ H   
Sbjct: 35  LEAHSHRTFAGFVCLIQLSIHISSGYDFLIDALSLRHVIPTCLGPILANPNILKVMHGAD 94

Query: 471 YDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
            D   L R +G  +    D    S  L     S  +A + +K+         K+ + S  
Sbjct: 95  SDIPWLQRDFGCYVVNLFDTGRASRAL--KFQSAGLAFLLRKYAGLDPD---KAHQLSDW 149

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
             +     ++ +A+ ++  +L ++  LR +L 
Sbjct: 150 RRRPLPDDMRTYAVADTRYLLDIYDKLRLELK 181


>gi|148664472|gb|EDK96888.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 5 [Mus musculus]
          Length = 1171

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 27/186 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 772 QELLRLFGVPYIQAP-MEAEAQCAMLDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 826

Query: 159 KEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           K + ++    +  +   G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 827 KNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGRG 884

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED--CNGPR 271
           L+ +L                E+   A+ ++K+     D  +   L  L L     N   
Sbjct: 885 LDPLL-------------KFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAV 931

Query: 272 LISFLK 277
             ++L+
Sbjct: 932 ADAYLR 937


>gi|193290152|ref|NP_001123262.1| exonuclease 3'-5' domain-like 2 [Nasonia vitripennis]
          Length = 605

 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 88/236 (37%), Gaps = 35/236 (14%)

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE---TIGSASFKII 395
           +K +++   +K   +   +     I+ D    + + +     VQ++    + G   F   
Sbjct: 33  TKKSTDNNNKKNRQDDDDEKKVLNISLDKVILVDSPEKCDYAVQRIRCNLSDGVLGFDCE 92

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
                  + +P+++                   + L+ H    +  + +    I   LK+
Sbjct: 93  W-----VNEEPVSL-------------------LQLATHNGVCALFRLSKIGHIPPKLKE 128

Query: 456 FFENEHFLKIGHNIKYD--KLVLHRYGISMRGFEDI-MLMSYVLDSGRSSHDIASIAQKW 512
              +   LK+G    +D  + +   Y   + G  D+ ML      S  S   +A++  ++
Sbjct: 129 LLSSRDLLKVGV-ASFDDGRKIAKDYNCQVVGTVDLRMLAHR--HSLPSPKSLAALCVQY 185

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS-NVILQLWLLLRPKLIVEKLLH 567
           L     +IL+ R S+   D +++ Q+  +A  ++   +L    +L+  +    +  
Sbjct: 186 LDTEMDKILEVRCSNWNADSLTNEQIS-YAAHDAYAAVLIYHQILQKIVQKRSIWE 240


>gi|302508023|ref|XP_003015972.1| Rad2-like endonuclease, putative [Arthroderma benhamiae CBS 112371]
 gi|291179541|gb|EFE35327.1| Rad2-like endonuclease, putative [Arthroderma benhamiae CBS 112371]
          Length = 821

 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 82/246 (33%), Gaps = 46/246 (18%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
             +FD P         PDYK  R         Q+ L R   + F  P     G EA+   
Sbjct: 128 IFVFDGPHR-------PDYKRGRLVSKNAAAAQIELSRKLIELFSYPCHMAPG-EAE--- 176

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--------EKIDIEHVIKKWG 173
                  ++ G    ++S D D + +      L +  K           +D+ +   + G
Sbjct: 177 -AECAKLQQAGVVDAVMSNDVDAL-MFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDG 234

Query: 174 -----IPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL-QEYGNLENILINASRI-- 224
                +    MV +  L+G   D  P G+   G K A  +    +G  E++L     +  
Sbjct: 235 DSKVTLDTRGMVLVALLSG--GDYSPAGVALCGPKLAVEIARAGFG--EDLLEITQDLLS 290

Query: 225 --KQKKRRENILEYAETARLSRKL--------VMLRTDVPITIPLEHLILEDCNGPRLIS 274
               KK  E + E+ E  RL  +L              V I     +L         + S
Sbjct: 291 GRSTKKAEEALCEWRE--RLQYELQSNESGYFKTKHKAVKIPADFPNLAALRSCVDPVTS 348

Query: 275 FLKALE 280
            LK ++
Sbjct: 349 SLKEMD 354


>gi|294932999|ref|XP_002780547.1| flap endonuclease 1, putative [Perkinsus marinus ATCC 50983]
 gi|239890481|gb|EER12342.1| flap endonuclease 1, putative [Perkinsus marinus ATCC 50983]
          Length = 427

 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 118/399 (29%), Gaps = 84/399 (21%)

Query: 26  LSRKHDGLPVNAIAGFCNMLWKLLQ-NSRKESIASHFAVIFDYPAVTFRNEIYPD----- 79
           +    +G+  + + GF +   K+L+   R          +FD      + +   +     
Sbjct: 52  MLTNSEGVCTSGVHGFLHRTIKMLELGIRP-------IFVFDGHPPAMKYDCLKERRVQA 104

Query: 80  --YKAN-----RPKIPEMLLPQLPLVRLATQAFGIPAIEIQ----GFEADDIIATYTYIA 128
             YK          +P    P   +         +  + +        A  +IA     A
Sbjct: 105 MKYKKTASTPAETSMPASEAPSRSVSMEIDIDRRLKRLVVHPPLLTHRASTLIAAPQAEA 164

Query: 129 E-----KEGFAVTIISTDKDLMQLVSPTT-----------------CLYDTVKE------ 160
                 KEG A  + + D D +   +P                     Y   KE      
Sbjct: 165 TCVRLCKEGKADAVSTEDIDAVVFGAPIVLKNLSNTLHRLEQNSSSRPYSRSKEVPNNYV 224

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220
            +I  + V+    +  E +  L  L G   D  P IP IG   A  LL ++G++ +I+  
Sbjct: 225 REISRDVVLDSLSLTAEGLAELAILCG--CDYCPSIPKIGPTRAYGLLLKHGSITSIITA 282

Query: 221 ASRIKQKKRRE----NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                 K  +        E  E   L+          P+T   E       N   L   L
Sbjct: 283 IE--GSKTYKAPSGWAYREAKE-LFLN----------PLTTD-EIFPRSKMNVDALADLL 328

Query: 277 -KALEF--------TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIK 327
              L++           ++R+  T    A   +     +      G     +   +++  
Sbjct: 329 VHRLDYNPARVDNIKNRLDRIGGTATQTAERGKRQATLLEFPWTPGPKRARKSMGESSTP 388

Query: 328 TSQFSSLSD---QTSKINSEQTPQKLFLERLQKLSQYPI 363
           ++   S       T+ I+ ++ P      R      + I
Sbjct: 389 STAAPSPRRHHCDTTVIDLDEIPSSSDESRNMYSESFII 427


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 82/258 (31%), Gaps = 44/258 (17%)

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
              +K    +     Q+ I + +   ++N  D      K+       F I T  +  ++ 
Sbjct: 382 NEAKKYSKLKAIYGVQFNIIDKNIPIVLNANDT-----KISDATYVIFDIETTGLSPYYD 436

Query: 405 KPIAIAISTLDQKDDTSFKVETIFID---------LSVHTSQDSTGKNTLTKEILSYLKK 455
           K I    +    K      ++                   S +        KE L  +K 
Sbjct: 437 KIIEFG-AIKYHKGVQVESIQMFINPEEKISDKIFAITKISNEDVKDALKIKEALVKIKD 495

Query: 456 FFENEHFLKIGHN-IKYDKLVL------HRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           F  +   + I HN IK+D   L      ++  I      D + +S  ++     H +  I
Sbjct: 496 FIGD--SVLIAHNGIKFDLPFLNCKLEENKMDIIKNPLIDTLQISRAINEQIHGHSLGVI 553

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-AIENSNVILQLWLLLRPKLIVEKLLH 567
           A+K+                   KI   + Q H A +++  +L +W  +     ++ +  
Sbjct: 554 ARKY-------------------KIDYDETQAHRADKDAEYLLNIWKRMLENQKLQDIKT 594

Query: 568 VYERLDKPMIDVVSQMEI 585
           + E       D + +   
Sbjct: 595 LNEINSNLQNDFLRERNR 612


>gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
 gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
          Length = 230

 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 43/223 (19%)

Query: 392 FKIITDTMDAFHSK-PIAIAISTLDQKDDTSFKVETIFIDL--------SVHTSQDSTGK 442
           F   T   D       + I    L  +  T       +           +VH   D   +
Sbjct: 6   FDTETTGFDPASGDRLVEIGCIELFNRVPTGRTFHAYYNPQRSMPAAAEAVHGLSDGFLR 65

Query: 443 N-TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG--------FEDIMLMS 493
           +  L    +  L  F E+ H   + HN ++D   L  + + + G          D + ++
Sbjct: 66  DKPLFGHGVQELLAFLEDSHL--VAHNARFDFGFL-NHELKLCGLPEVSMDRMIDTVAIA 122

Query: 494 YVLDSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPIDKISD 535
             +  G   H + ++  ++                  L+    E+   R+  + + +  +
Sbjct: 123 RQIHPGA-KHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELTGGRQIGLGLAQEEE 181

Query: 536 SQV--QEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKP 575
             +   E A + +   ++   +        E+       L+KP
Sbjct: 182 KLIVNMELAAKAAVRPVRPARVFAASAEELERHAAFVATLEKP 224


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1440

 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 20/144 (13%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ------- 437
           +      F   T  ++A       I I+ +  K           ID              
Sbjct: 423 DETEYVVFDTETTGLNAREDTL--IEIAAVKVKAGQIVDTYATLIDPERSLDPKIVELTG 480

Query: 438 ---DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
              +        +E L   ++ F     L + HN ++D   L+    R G+    +   D
Sbjct: 481 ITNEMVAGQPKLREALDGFRQ-FARGAVL-VAHNAEFDVGFLNQCAERLGLDPWEQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++ VL  G  ++ + ++ QK+
Sbjct: 539 TLALARVLYPGEKNYKLKTLTQKF 562


>gi|51870121|ref|YP_073674.1| hypothetical protein LDVICp168 [Lymphocystis disease virus -
           isolate China]
 gi|51858329|gb|AAU11013.1| hypothetical protein [Lymphocystis disease virus - isolate China]
          Length = 337

 Score = 45.8 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 54/150 (36%), Gaps = 8/150 (5%)

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDK---DLM 145
           E+    +   +   +A G   +   G EA+      T  A K   AV    +D       
Sbjct: 141 EVTKGDIENFQKLIKAVGFAYLIAPG-EAELYAVKLT--ASKITDAVVSFDSDVIAAAAC 197

Query: 146 QLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
           Q VS      ++    +IDI+  +   G  P + +    L G   D   G+  IG   A 
Sbjct: 198 QGVSKIYTDINSQGVVEIDIDLTLDILGFNPMQFLDFCILCG--TDFNVGVSNIGPIKAY 255

Query: 206 LLLQEYGNLENILINASRIKQKKRRENILE 235
             L  Y  LEN+  + S I   + R    E
Sbjct: 256 KALDNYKKLENVPYDISHINLNRIRNIFKE 285


>gi|299768503|ref|YP_003730529.1| 3'-5' exonuclease [Acinetobacter sp. DR1]
 gi|298698591|gb|ADI89156.1| 3'-5' exonuclease [Acinetobacter sp. DR1]
          Length = 213

 Score = 45.8 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 20/146 (13%)

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           SE +P        Q      +N  +   I N    +   ++L+      F     +   F
Sbjct: 2   SEASPLLDKASIQQLPPFENLNYQNIVVIENIDQCKTIEEELKNAVVLGFDSE--SKPTF 59

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               +    ST       +   +     ++  T              L +L+    N+  
Sbjct: 60  RVGEV----STGPHLIQLATAKKAYLFHVNSST--------------LKFLQPILSNQKQ 101

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFED 488
           +K+G  +K DK + H+ GI +    D
Sbjct: 102 IKVGFGLKNDKHIFHKKGIELESCVD 127


>gi|198434339|ref|XP_002124511.1| PREDICTED: similar to Flap endonuclease GEN homolog 1 [Ciona
           intestinalis]
          Length = 579

 Score = 45.8 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 28/164 (17%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                   GIP I+ +G EA+   A    +   +G     ++ D D     + +     +
Sbjct: 117 CCQLLDQLGIPWIKSEG-EAEATCAALNSVGVVDG----CMTNDSDTFLYGAKSVYRNLS 171

Query: 158 VKEEKIDIE-------HVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQ 209
           +  ++ DI+        +  K  +  + ++ L  L G   D  P G+PG+G K A +LL 
Sbjct: 172 MTTDRNDIDVECYELCDIESKLQLNRKSLIALGLLLG--CDYSPQGVPGVGKKQAIMLLS 229

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253
            + N++ +             E +  +   + LS  +    T  
Sbjct: 230 SWKNIDPL-------------EKLKAWKSESVLSPTVTKKPTHC 260


>gi|91084227|ref|XP_969046.1| PREDICTED: similar to egalitarian CG4051-PA [Tribolium castaneum]
 gi|270009271|gb|EFA05719.1| egalitarian [Tribolium castaneum]
          Length = 812

 Score = 45.8 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKL-VLHRYGISMRGFEDIMLMSYVL---DSGRSSHD 504
           I S LKK  E+   +KI H+ + D + + +++ I++    D      VL   ++GR  + 
Sbjct: 456 IDSGLKKLLESSQIVKIVHDCRNDSVNLFNQFNITLNTIFDTQAAHAVLTFQETGRPVYK 515

Query: 505 IASIAQKWLSYTRKEILKSRKSSI 528
             S+A   L       +   K  +
Sbjct: 516 AKSVALNALCEHYGAPINPMKDQL 539


>gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
 gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
          Length = 382

 Score = 45.8 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 68/216 (31%), Gaps = 28/216 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T I     + Q+   + +    +          +  K   I  +T   +           
Sbjct: 2   TPITTNDALVQFCSDVASAPFIAVDTEFMRETTYWPKLCLIQAATPTHEAII-------- 53

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
                    D           L  L+    +   +K+ H  + D  +  + G   +   D
Sbjct: 54  ---------DPQADGLDLTPFLDILR----DPAIVKVFHAARQDTEIFVKLGAMPKPMFD 100

Query: 489 IMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             + +       + ++D   + ++ L     +   SR +      +SD+Q+  +AI +  
Sbjct: 101 TQVAAMAAGFGDQVAYD--GLVRQMLKIDLDK--GSRFTDWSRRPLSDAQLT-YAIGDVT 155

Query: 548 VILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQ 582
            +  L+  LR +L  E  L  V   ++  +   +  
Sbjct: 156 HLAALYPKLRDRLAREGRLDWVTSEMEDLVNPELYD 191


>gi|495452|gb|AAA56883.1| DNA polymerase [Bacillus phage SP82]
          Length = 86

 Score = 45.8 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK------ 726
           E+R+ + + + +   L   I+     VH  Y++  T+TGRL+S EPN Q  P K      
Sbjct: 1   EFRKANHLYNNFVSKLSLMIDPDNI-VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPTL 59

Query: 727 TDLGQKIRRAFISPPT--KKLISADYS 751
                +I++ F S       ++  DYS
Sbjct: 60  FQYNHEIKKMFNSRFGDDGVIVQFDYS 86


>gi|213019164|ref|ZP_03334971.1| putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995273|gb|EEB55914.1| putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 378

 Score = 45.8 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LS +KK   N    K+ H+ + D   +L           D  + +            + +
Sbjct: 48  LSLIKKIMLNREITKVFHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKV 107

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            +++      +I    K+S  + +       ++A+ +   +  L  +L  KL     +  
Sbjct: 108 VEQYQGVALDKI--KAKNSDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNRMGW 165

Query: 569 YERLDKPMIDV 579
           ++   + ++DV
Sbjct: 166 FQEEMESIVDV 176


>gi|82914773|ref|XP_728841.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485391|gb|EAA20406.1| XPG I-region, putative [Plasmodium yoelii yoelii]
          Length = 1274

 Score = 45.8 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 24/153 (15%)

Query: 75   EIYPDYKANR-------PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
            E+  +YK  +        ++ E        ++L    FGIP I+    EA+   A     
Sbjct: 910  ELMKEYKRLKNNNITINEEMNED-------IKLLLDLFGIPYIQSPC-EAEAQCAYLN-- 959

Query: 128  AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQA 184
                 +   IIS D D++     T       K+   E  +   + +K G+  + ++ +  
Sbjct: 960  --NNNYCDAIISDDSDVIVFSGKTIIKNFFNKKKTVEVYEKNLIERKLGLYQDDLINISM 1017

Query: 185  LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
            L G   D   G+ G+G   A  +++ +   E++
Sbjct: 1018 LCG--CDYTIGVHGVGIVNALEIIKAFPTFEDL 1048


>gi|320167587|gb|EFW44486.1| exodeoxyribonuclease 1 [Capsaspora owczarzaki ATCC 30864]
          Length = 522

 Score = 45.8 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 23/189 (12%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
                 A +A  +  I    +EAD  +         E +   +IS D DL+         
Sbjct: 79  YQKCVDALRAINVEYIVAP-YEADAQLGYLAR----ENYIAAVISEDSDLLLFGCQRVLY 133

Query: 155 YDTVKEE--KIDIEHVIKKWGI-----PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
                 E   ID +       +       +++  +  L+G   D +  I GIG KTA  L
Sbjct: 134 KMDKFGEGVLIDQKDFANCLELDLQNWTLDQLRRMCILSG--CDYLDSISGIGLKTANKL 191

Query: 208 LQEYGNLENILINASR--IKQKKRRENILEYAETARLSRKLV-------MLRTDVPITIP 258
           L  Y  ++N++ +  +  +   +  E++   AE     +++V          T VP  + 
Sbjct: 192 LIRYKTVQNVVTHMRKKMMDVPRDYEDLFLQAENTFKYQRVVHPGSLELTHVTPVPDAVD 251

Query: 259 LEHLILEDC 267
           +  +     
Sbjct: 252 ISQMDYIGP 260


>gi|313233556|emb|CBY09728.1| unnamed protein product [Oikopleura dioica]
          Length = 790

 Score = 45.8 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 13/153 (8%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L+     S++  T  + +S    +D         E +  L + F N   +KI H  + D 
Sbjct: 282 LEHHRYRSYQGFTCLVQIS-SRQKDYILDPLAVWEDMYKLNEVFANPKIVKIFHGSRNDM 340

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIP 529
           L L R +G+ +    D    +  LD   +   +  + Q +         ++   R   IP
Sbjct: 341 LWLQRDFGVYVVNLFDTFFAAKKLD--LAKKSLDYLLQHYCKIRLDKRFQLADWRMRPIP 398

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            + +       +A ++++ +L ++  LR  L  
Sbjct: 399 PNML------RYARQDTHYLLYVYDRLRADLEK 425


>gi|190570587|ref|YP_001974945.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356859|emb|CAQ54230.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 394

 Score = 45.8 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LS +KK   N    K+ H+ + D   +L           D  + +            + +
Sbjct: 64  LSLIKKIMLNREITKVFHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKV 123

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            +++      +I    K+S  + +       ++A+ +   +  L  +L  KL     +  
Sbjct: 124 VEQYQGVALDKI--KAKNSDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNRMGW 181

Query: 569 YERLDKPMIDV 579
           ++   + ++DV
Sbjct: 182 FQEEMESIVDV 192


>gi|313213333|emb|CBY37160.1| unnamed protein product [Oikopleura dioica]
          Length = 689

 Score = 45.8 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 94/296 (31%), Gaps = 43/296 (14%)

Query: 275 FLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID----RDTTIKTSQ 330
             +      +I  V   ++   AN       +N   ++    +          T I TS 
Sbjct: 165 LFREKPDNTIIPFVPRLFEKPHANKPLPEQLVNVNSDRHKTGKPLSMILKELGTQIDTSI 224

Query: 331 FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
           +S   ++  K     +      E         +++   + + ++      +Q+L      
Sbjct: 225 YSHPYEEEIKSCGVPSASDNVTE------YKALDDTPLSVVESSLSFNLMIQELREESEL 278

Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           +  +                          S++  T  + +S    +D         E +
Sbjct: 279 AVDLE--------------------HHRYRSYQGFTCLVQIS-SRQKDYILDPLAVWEDM 317

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             L + F N   +KI H  + D L L R +G+ +    D    +  LD   +   +  + 
Sbjct: 318 YKLNEVFANPKIVKIFHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLD--LAKKSLDYLL 375

Query: 510 QKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           Q +         ++   R   IP + +       +A ++++ +L ++  LR  L  
Sbjct: 376 QHYCKIRLDKRFQLADWRMRPIPPNML------RYARQDTHYLLYVYDRLRADLEK 425


>gi|110430659|gb|ABG73449.1| DNA repair protein [Oryza brachyantha]
          Length = 629

 Score = 45.8 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                +  G+P +  +G E +            EG     I++D D   L    T +   
Sbjct: 131 CVELLEYLGMPVLRAKG-EGE----ALCAQLNNEGHVDACITSDSDAF-LFGAKTVIKVL 184

Query: 158 VKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                   E  ++  +    G+  ++MV +  L G   D + G+PG G +TA   +Q + 
Sbjct: 185 RSNCKEPFECYNMTDIESGLGLKRKQMVAMALLVGSDHD-LHGVPGFGPETALRFVQLF- 242

Query: 213 NLENILINASRIKQKKR 229
           + + +L     I +   
Sbjct: 243 DEDTVLDKLYEIGKGVY 259


>gi|71278230|ref|YP_270192.1| ribonuclease D [Colwellia psychrerythraea 34H]
 gi|71143970|gb|AAZ24443.1| ribonuclease D [Colwellia psychrerythraea 34H]
          Length = 379

 Score = 45.8 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 64/209 (30%), Gaps = 30/209 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I + K +    ++L      +           ++K   + +   +Q          
Sbjct: 2   HYQLIEDQKSLNNLCEQLVKAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQ--------LA 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
           +   L++              + L+       NE+  K+ H    D  V    G      
Sbjct: 54  LIDPLAI--------------DDLAPFWALLTNENITKVLHACSEDLEVFLTAGNCKPVN 99

Query: 486 FEDIMLMSYVLDSGRSSHDIA-SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +M          H ++   A     +T  E+ KS   +    +    +  ++A  
Sbjct: 100 LIDSQIMM-----SFLGHGLSLGYAAMVKHFTDIELDKSESRTDWTKRPLTEKQLDYASA 154

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLD 573
           + + +  ++  L  ++     L  Y +++
Sbjct: 155 DVDHLFDIYPKLLAEITQAGFLA-YAQIE 182


>gi|302810129|ref|XP_002986756.1| hypothetical protein SELMODRAFT_425660 [Selaginella moellendorffii]
 gi|300145410|gb|EFJ12086.1| hypothetical protein SELMODRAFT_425660 [Selaginella moellendorffii]
          Length = 336

 Score = 45.8 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 13/142 (9%)

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK- 162
           AFGIP + +   EA+   A    +    GFA    + D D +   +       ++K  + 
Sbjct: 31  AFGIPCL-VSLEEAEAQCAALNAM----GFADACFTADSDALLFGAKVVYKDISLKPGES 85

Query: 163 ----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
                D+  +   +G     ++ L  L G   D  PG+ G+G + A  +++++G  + IL
Sbjct: 86  HVVAYDMTKIRNAFGYGRNSLIALGILLG--CDYFPGVHGLGPEKAQQIVKKFGE-DKIL 142

Query: 219 INASRIKQKKRRENILEYAETA 240
               R       +  L+  + A
Sbjct: 143 EEMLRQGPVTLAKRTLKCKDKA 164


>gi|118095898|ref|XP_001234311.1| PREDICTED: similar to DNA polymerase gamma [Gallus gallus]
          Length = 317

 Score = 45.8 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 78/248 (31%), Gaps = 82/248 (33%)

Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS-PFR----LATQLRIPRSE 827
           +  D+H   AA +            R HAK  N+  IYG   PF     +    R+ + +
Sbjct: 9   DGTDLHSKTAATV---------GISREHAKVFNYGRIYGAGQPFAERLLMQFNHRLTQQQ 59

Query: 828 AADYIKRYFHRFPGIHEY------------IEKTKNFVRQNGYVETIF------------ 863
           A +  ++ +    GI  +            +E   +   ++G V                
Sbjct: 60  AREKAQQMYAVTKGIRRFHLSEEGEWLVKELELAVDKA-EDGTVSAQDVQKIQREAMRKS 118

Query: 864 GRRIHYDEINSPKSS-------------------------------------IRNINERA 886
            R+  +D +     +                                      +     +
Sbjct: 119 RRKKKWDVVAHRMWAGGTESEMFNKLESIALSASPQTPVLGCHISRALEPAVAKGEFLTS 178

Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS----- 941
            +N  +Q SA D     ++S+    E++ +  +  + IHDE+ + V E++   A+     
Sbjct: 179 RVNWVVQSSAVDYLHLMLVSMKWLFEEYDINGRFCISIHDEVRYLVQEQDRYRAALALQI 238

Query: 942 -QIIVHSM 948
             ++   M
Sbjct: 239 TNLLTRCM 246


>gi|74211217|dbj|BAE37682.1| unnamed protein product [Mus musculus]
          Length = 1043

 Score = 45.8 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 52/226 (23%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 772 QELLRLFGVPYIQAP-MEAEAQCAMLDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 826

Query: 159 KEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           K + ++    +  +   G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 827 KNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGRG 884

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED------- 266
           L+ +L                E+   A+ ++K+     D  +   L  L L         
Sbjct: 885 LDPLL-------------KFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQLTPGFPNPAV 931

Query: 267 --------------------CNGPRLISFLKALEFTKLINRVATTY 292
                                +  ++  F +       +    + Y
Sbjct: 932 ADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLY 977


>gi|184159750|ref|YP_001848089.1| 3'-5' exonuclease [Acinetobacter baumannii ACICU]
 gi|183211344|gb|ACC58742.1| 3'-5' exonuclease [Acinetobacter baumannii ACICU]
 gi|322509663|gb|ADX05117.1| Exonuclease putative [Acinetobacter baumannii 1656-2]
          Length = 213

 Score = 45.8 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           SE +         Q      +N+ +   I N +  +   ++L+      F     +   F
Sbjct: 2   SEASALLDKTSIQQLPPFENLNHQNIVVIENGEQCKTIEEELKAATFLGFDSE--SKPTF 59

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               +    ST       + + +     ++  T              L +L+    N+  
Sbjct: 60  QVGEV----STGPHLIQLATEHKAYLFHVNSST--------------LKFLQPILSNQKQ 101

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFED 488
           +K+G  +K DK + H+ GI +    D
Sbjct: 102 IKVGFGLKNDKHIFHKKGIELESCID 127


>gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae
           bacterium]
          Length = 386

 Score = 45.8 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
             TD +  F     +  +  +D +             + V   +     + +    ++ L
Sbjct: 4   TTTDQLKTFCENIQSADVLVVDTEFVRERTYFHRTGLIQVGGGEHFAAIDPIALPDMTPL 63

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSH-DIASIAQK 511
            +  ++   +K+ H  + D  +L R+ G  +    D  + + ++  G  +    A I  K
Sbjct: 64  LELLKDPTKVKVFHAARQDLEILVRFCGQVIPPIFDTQIAAALV--GWGTQISFAKIVYK 121

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            L    K+I KS   +    +       E+AI++   ++ ++  L  +L     L 
Sbjct: 122 ALG---KKIHKSETYTDWCRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLD 174


>gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
 gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
          Length = 469

 Score = 45.8 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 39/234 (16%)

Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409
             + R    ++  + + + T    T+DIQ     L  +    F   T        + + I
Sbjct: 239 FPVPREASPARPVVFDFAMTTRTETRDIQDVP--LRDLTYVVFDTETTGFLPNKDEVVQI 296

Query: 410 -AISTLDQKDDTSFKVETIFID--------LSVHTSQDSTGKNTLTKEILSYLKKF--FE 458
            A+  ++ +      ++ +            +VH   D+  K+    +++   +KF  F 
Sbjct: 297 GALRVVNGQQAPGEVLDLLVNPGRAIPASSTAVHRITDAMVKD--APDMVHAGRKFHSFA 354

Query: 459 NEHFLKIGHNIKYDKLVLHRY----GISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
            +  L + HN  +D    HRY    G+       D +L+S VL      H +  +A++ L
Sbjct: 355 RDAVL-VAHNAPFDLSFFHRYAPKIGMKFDHPVLDTVLLSAVLFGITEGHTLDELAKR-L 412

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
                E+L   + +              AI ++     ++L + P L    L  
Sbjct: 413 GI---ELLDKHRHT--------------AIGDAIATRDIFLRMIPMLEARGLTT 449


>gi|295689658|ref|YP_003593351.1| ribonuclease D [Caulobacter segnis ATCC 21756]
 gi|295431561|gb|ADG10733.1| ribonuclease D [Caulobacter segnis ATCC 21756]
          Length = 389

 Score = 45.8 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 66/207 (31%), Gaps = 26/207 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T ++  +  +L      +          +  K   I +++   +             
Sbjct: 4   ITTTAELAAFCNELAGEPFVAVDTEFMRETTYWPKLCLIQVASPTHEAVI---------- 53

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490
                  D    +   + +L+ ++    +E  LK+ H  + D  + +      +   D  
Sbjct: 54  -------DPLADDIDLEPLLAVMR----DERILKVFHAARQDVEIFNNLKAMPKPLFDTQ 102

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           +       G       ++ ++ L   R E+ KS + +    +        +A+ +   + 
Sbjct: 103 VAGMAAGFGEQI-AYDALVRQML---RIELDKSSRFTDWARRPLTEAQLTYALADVTHLA 158

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMI 577
            L+ +LR +L     L   E  +   I
Sbjct: 159 ALFPILRERLETSGRLAWVEE-EMTAI 184


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1440

 Score = 45.8 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 20/144 (13%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ------- 437
           +      F   T  ++A       I I+ +  K           ID              
Sbjct: 423 DETEYVVFDTETTGLNAREDTL--IEIAAVKVKAGQIVDTYATLIDPERALDPKIVELTG 480

Query: 438 ---DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
              +        KE L   ++ F     L + HN ++D   L+    R G+        D
Sbjct: 481 ITNEMVAGQPKLKEALDGFRQ-FARGAVL-VAHNAEFDVGFLNQCAERLGLDPWEEPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++ VL  G  ++ + ++ QK+
Sbjct: 539 TLALARVLYPGEKNYKLKTLTQKF 562


>gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus oris PB013-T2-3]
 gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus oris PB013-T2-3]
          Length = 1444

 Score = 45.8 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 68/184 (36%), Gaps = 21/184 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLS 432
            +L+      F + T  + A + K I ++         ++  D+  D  F +     +L+
Sbjct: 416 AQLKDNTYVIFDVETTGLSAIYDKVIELSAVKMKNGEVLARFDEFIDPGFPLSEQTTNLT 475

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGF 486
             T +   G  T  +E+    K F +    +  GHN+ +D   +     R+ +       
Sbjct: 476 SITDEMVRGSKT-EEEVFKMFKDFCQ--GTIIAGHNVSFDMGFMNTGYRRHQMEEITEPV 532

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            D + ++  L      + + ++++K+   L +  +    +  +   + K      + + I
Sbjct: 533 IDTLPLARFLYPNMRGYRLNTLSKKFKVALEHHHRANYDAEATGHLLYKFLKDAEKRYEI 592

Query: 544 ENSN 547
              +
Sbjct: 593 RYVD 596


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 1421

 Score = 45.8 bits (107), Expect = 0.041,   Method: Composition-based stats.
 Identities = 38/324 (11%), Positives = 91/324 (28%), Gaps = 44/324 (13%)

Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321
           LI       +    L  +       +     D  A     + L    +    +    ++ 
Sbjct: 284 LIRGPVQFDKFSQELTLMAHDINQAQAPVRLDQAAEKRVELHLHTKMSAMDSVCSAADVI 343

Query: 322 RDTTIKTSQFSSLSDQ--TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQ 379
           +          +++D              K    +L    +  + +D  T +++  D   
Sbjct: 344 KQAAAWGHPAVAITDHGVVQAFPEAYNAAKKSGIKLIYGVEGYLIDDGITTVMHLSDNG- 402

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVETIFI-DLSVH- 434
              KL  +        T        + I I         + D     V+        V  
Sbjct: 403 ---KLTDLTYVVLDFETTGFSPQTDEIIEIGAVKFINGMEVDRFGTLVKPDKEIPFEVSK 459

Query: 435 ---TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-----RYGISMRG- 485
               + D        ++ L+ L++F  +   + + HN  +D   L         + +   
Sbjct: 460 LTGITLDMVKDAPDARQALAALREFIGDA--VLVAHNAAFDLSFLKVGFRKYLQVEVTNQ 517

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-AIE 544
             D +  + VL     +H + ++ +++                            H A++
Sbjct: 518 VVDTLGTARVLLPHLKNHKLDTLVKEF---------------------KIELANHHRAVD 556

Query: 545 NSNVILQLWLLLRPKLIVEKLLHV 568
           ++    +LW +L  K + +    +
Sbjct: 557 DAAATGKLWQVLLTKAVEQGAQDL 580


>gi|308455848|ref|XP_003090418.1| hypothetical protein CRE_16505 [Caenorhabditis remanei]
 gi|308264027|gb|EFP07980.1| hypothetical protein CRE_16505 [Caenorhabditis remanei]
          Length = 591

 Score = 45.8 bits (107), Expect = 0.041,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 17/146 (11%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVL--DS-GRSSHDIA 506
           S  K   E+E  +K+ H+ +    +L H+Y + MR   D  +   +L  D  G+S H++ 
Sbjct: 378 SGFKGILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHDKFGKSLHEMR 437

Query: 507 SIAQKWL-------SYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVIL-QLWLLL 556
            I+   L       S    ++   + S  P   +     + Q   +E ++ +L  L+  L
Sbjct: 438 PISFINLQRVYYPQSIMLSDVTPRKMSQSPNWGVRPITEEFQLTIVEEAHCLLSALYQAL 497

Query: 557 RPKLIVEKLLHVYER--LDKPMIDVV 580
              LI   L  ++E   ++    +V+
Sbjct: 498 -SNLIPVHLRGLFEDKCIEVNHPEVL 522


>gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 74/207 (35%), Gaps = 31/207 (14%)

Query: 388 GSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFIDLSVHT-------SQDS 439
              +F + T  +D  +++ I I A+   D K    F       +L           S D 
Sbjct: 4   SYIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELISPAITGLTGISNDM 63

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMR--GFEDIMLMS 493
                  + +++    F E E  L IGHNI +D         R G+     G + + +  
Sbjct: 64  VASARPARSVITDFIDFCE-EDIL-IGHNIIFDYSFTKCTAAREGLPFEKMGIDTLKIAK 121

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----HAIENSNVI 549
            V      S  ++++ + +      +I          D ++ +++ +    +   ++   
Sbjct: 122 KV-HPELESKSLSALCEHY------KIENKAAHRAYFDALATAKLYQTLSHYFEPDNPKT 174

Query: 550 LQL----WLLLRPKLIVEKLLHVYERL 572
            +     + + +P+    K L + ERL
Sbjct: 175 FKPSQLTYKIRKPQPATPKQLALLERL 201


>gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
 gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
          Length = 702

 Score = 45.8 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHS-KPIAIA-ISTLDQKDDTSFKVETIFID--------LSV 433
           L+ +    F   T  +      + + IA +  +  +  T      +           +  
Sbjct: 504 LDRLHYVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGETFNMLVDPKRPIPPESIPF 563

Query: 434 HTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMR-GFE 487
           H   D+      T + +L   + F      + + HN  +D   L       G++      
Sbjct: 564 HGITDAMVAGKPTIDTVLPQFRSFVS--GAVLVAHNAAFDLKFLKMKERAAGVTFDCPVL 621

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK 511
           D ML+S +L      H +  IAQ+
Sbjct: 622 DTMLLSRMLLGNDGDHTLDGIAQR 645


>gi|167949152|ref|ZP_02536226.1| hypothetical protein Epers_22661 [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 41

 Score = 45.8 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 1  MQKENHLFLVDGSSFIYRAFYAT 23
          M ++    LVDGSS+++RAF+A 
Sbjct: 1  MPEQKPFILVDGSSYLFRAFHAL 23


>gi|42520085|ref|NP_966000.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409822|gb|AAS13934.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 4/139 (2%)

Query: 443 NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGR 500
           + L  EI LS++KK   N+   K+ H+ + D   +L  +        D  + +       
Sbjct: 56  DALVPEIDLSFIKKIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYH 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
                + + +++      +I    K+S  + +       ++A+ +   +  L+ +L  KL
Sbjct: 116 DFIGYSKVVEQYQGIALDKI--KAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKL 173

Query: 561 IVEKLLHVYERLDKPMIDV 579
                +  ++   + ++D+
Sbjct: 174 EENNRMGWFQEEMESIVDI 192


>gi|262380470|ref|ZP_06073624.1| 3'-5' exonuclease [Acinetobacter radioresistens SH164]
 gi|262297916|gb|EEY85831.1| 3'-5' exonuclease [Acinetobacter radioresistens SH164]
          Length = 218

 Score = 45.8 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDS--GRS 501
            L  +IL++LK    N+  +K+G  +K D  +  + GI ++     + +S    +   + 
Sbjct: 86  QLNPDILNFLKPILANQKQVKVGFGLKNDVHLFQKKGIELQS---TVELSKCFSAFGFKQ 142

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK-L 560
              + +           +  K   S     ++S +Q+  +A  +    L ++  LR + L
Sbjct: 143 PVGLKNAVALLFQQNFPKSKKISMSDWSNMRLSSAQIG-YAAADVYAALLVFQELRKRSL 201

Query: 561 IVEKLLHVYERLD 573
           + E  L + E+++
Sbjct: 202 LPEHTLRLLEQVN 214


>gi|71019629|ref|XP_760045.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
 gi|46099838|gb|EAK85071.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
          Length = 1532

 Score = 45.4 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 73/213 (34%), Gaps = 29/213 (13%)

Query: 89   EMLLPQLPL-VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147
            E +  Q+   +++  + FG+P I     EA+   A        +G    II+ D D+   
Sbjct: 1028 EDITKQMAQEIQMMLRLFGLPYITAP-MEAEAQCAELVSRRLVDG----IITDDSDVFLF 1082

Query: 148  VSPTTCLYDTVKEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
                         + ++   +  + ++ G+  EK+V L    G   D   G+ G+G   A
Sbjct: 1083 GGTRVYKNMFNNNKIVECFLLSDMQRELGLDREKLVQLAYYLG--SDYTEGLVGVGPVVA 1140

Query: 205  ALLLQEYGNLENILINASRIKQKKRRENILEY---AETARLSRKL--------------V 247
              LL  +   + +L       + +  ++  E+       R+ R L              V
Sbjct: 1141 MELLALFPGQDGLLKFRDWWMRVQMGQDTEEHTRGKTMRRIKRNLHNKVHLEPSWPEHAV 1200

Query: 248  MLRTDVP-ITIPLEHLILEDCNGPRLISFLKAL 279
            +     P +    E       +   L +FL   
Sbjct: 1201 LDAYFAPTVDESDEPFAWGLPDLDSLRTFLGEY 1233


>gi|299742153|ref|XP_001832288.2| exodeoxyribonuclease 1 [Coprinopsis cinerea okayama7#130]
 gi|298405054|gb|EAU89661.2| exodeoxyribonuclease 1 [Coprinopsis cinerea okayama7#130]
          Length = 895

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 20/152 (13%)

Query: 90  MLLPQLPL-VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148
            + PQ+   +    +A G+  +    +EAD  +A    I   +G    I++ D DL+   
Sbjct: 124 DVTPQMAYQLIKKLRAEGVQYLVAP-YEADAQLAYLERIGLVDG----ILTEDSDLLVFG 178

Query: 149 SPTT------CLYDTVKEEKIDIEHV------IKKWGIPPEKMVCLQALTGDSIDNIPGI 196
             +         Y  V  E+ D   V      I   G    +   +  L+G   D +P I
Sbjct: 179 CKSVFFKFDSTNYTVVSIERKDFASVVPPRSDIHLAGWTDVQFRSMAILSG--CDYLPSI 236

Query: 197 PGIGYKTAALLLQEYGNLENILINASRIKQKK 228
           PGIG KTA  LL++Y   E ++ +     +KK
Sbjct: 237 PGIGLKTACNLLRKYKTAEAVVKHLIFEGKKK 268


>gi|261821503|ref|YP_003259609.1| ribonuclease D [Pectobacterium wasabiae WPP163]
 gi|261605516|gb|ACX88002.1| ribonuclease D [Pectobacterium wasabiae WPP163]
          Length = 374

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 58/192 (30%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I +   +QQ   + +     +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITSDIGLQQICAQAQRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         +    +E   K  H    D  V    +G     
Sbjct: 62  DWAP----------------------FQALLRDEQVTKFLHAGSEDLEVFLNTFGTLPTP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           F D   L +++      S+  A++   ++  T   + KS   +  + +    +  ++A  
Sbjct: 100 FIDTQILAAFLGKP--LSYGFAALVADYMGVT---LDKSESRTDWLARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L + + L
Sbjct: 155 DVFYLLPMAIQL 166


>gi|303232226|ref|ZP_07318925.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
 gi|302481636|gb|EFL44697.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
          Length = 437

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 62/191 (32%), Gaps = 27/191 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I    +++ +   +   G  +          ++ +   I ++T  Q         +   D
Sbjct: 64  ITTPDELKAFCAHVAQEGCVAIDTEFIREKTYYPQLCLIQMATHTQSAVVDPLACSSLCD 123

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
           L+                         E++  +K+      D  VL+   G+  +   D 
Sbjct: 124 LAC----------------------LLEDKSIIKVFFACSQDIEVLYDALGVVPKNVFDA 161

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            L +  L   R      ++ +  +     +      +   +  +++ Q+ ++A ++    
Sbjct: 162 QLAAAFL-GYRYQLGYGALVEAMVGVHLPKT--QALTDWSLRPLTEEQL-KYAADDVIYQ 217

Query: 550 LQLWLLLRPKL 560
            Q++ LL  +L
Sbjct: 218 PQMYTLLVREL 228


>gi|269977281|ref|ZP_06184254.1| ribonuclease D [Mobiluncus mulieris 28-1]
 gi|307701108|ref|ZP_07638133.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
 gi|269934584|gb|EEZ91145.1| ribonuclease D [Mobiluncus mulieris 28-1]
 gi|307614103|gb|EFN93347.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
          Length = 422

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 8/173 (4%)

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN- 459
           A   + +A    ++    + +           V   ++ TG   +       L+      
Sbjct: 45  ARVCELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEPLGAAI 104

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
                I H+   D   L   G+  +   D  L + +L+       + S+ ++ L    + 
Sbjct: 105 GKAEWILHDATTDMPWLAEIGMRPKLLFDTELAAKLLN--FERFGLGSLTEQVLGIMLE- 161

Query: 520 ILKSRKSSIPIDKISDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
                 S+         Q   E+A  +   ++ L   L  +L         E+
Sbjct: 162 ---KEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQ 211


>gi|254361720|ref|ZP_04977856.1| ribonuclease D [Mannheimia haemolytica PHL213]
 gi|261492043|ref|ZP_05988618.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495020|ref|ZP_05991488.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153093246|gb|EDN74252.1| ribonuclease D [Mannheimia haemolytica PHL213]
 gi|261309336|gb|EEY10571.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312326|gb|EEY13454.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 372

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/265 (10%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  +   + ++   ++       +                               +  T
Sbjct: 6   HYQWVETNEQLEAVCEQARKTKVVALDTEF-------------------------IRTRT 40

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKLVLHRYGIS- 482
            +  L +    D    + +    +S    F     +++ +K+ H    D  V   Y    
Sbjct: 41  YYPILGLIQLFDGQQVSLIDPNTISDFSPFVSLLADKNIIKVLHACSEDLEVFE-YQFKQ 99

Query: 483 -MRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
                 D  +M+    +G   S   A +   +L+    E+ K    +  + +   ++  +
Sbjct: 100 LPEPMLDTQVMA--AFAGIGISMGFAKLVSHYLNI---ELDKGASRTDWLARPLSAEQLQ 154

Query: 541 HAIENSNVILQLWLLLRPKL--------IVEKLLHVYERLDKPMIDVVS-QMEITGIQID 591
           +A  +   +L ++  L   L        + E+ + + ++  +P+    + +      +++
Sbjct: 155 YAAADVWYLLPVYEKLAQALTKSTWQSAVAEECVALLKKAKQPINKEKAYKNIANAWRLN 214

Query: 592 QDLLKQVSAEISKNLLSLEENIYDL 616
           ++ L  +       +   ++    L
Sbjct: 215 REELAILQVLAKWRIEEAQKRNLAL 239


>gi|58698273|ref|ZP_00373191.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630014|ref|YP_002726805.1| Ribonuclease D [Wolbachia sp. wRi]
 gi|225677056|ref|ZP_03788062.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|58535197|gb|EAL59278.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225590902|gb|EEH12123.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591995|gb|ACN95014.1| Ribonuclease D [Wolbachia sp. wRi]
          Length = 392

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 4/139 (2%)

Query: 443 NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGR 500
           + L  EI LS++KK   N+   K+ H+ + D   +L  +        D  + +       
Sbjct: 56  DALVPEIDLSFIKKIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYH 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
                + + +++      +I    K+S  + +       ++A+ +   +  L+ +L  KL
Sbjct: 116 DFIGYSKVVEQYQGIALDKI--KAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKL 173

Query: 561 IVEKLLHVYERLDKPMIDV 579
                +  ++   + ++D+
Sbjct: 174 EENNRMGWFQEEMESIVDI 192


>gi|195397917|ref|XP_002057574.1| GJ18024 [Drosophila virilis]
 gi|194141228|gb|EDW57647.1| GJ18024 [Drosophila virilis]
          Length = 1238

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   + FGIP I     EA+   A    +    G     I+ D D+      T      
Sbjct: 878 CQELLRLFGIPYIVAP-MEAEAQCAFLNAVGITNGT----ITDDSDIWLFGGRTVYKNFF 932

Query: 158 VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            + +   +   E + + +    +K++ L  L G   D   GI GIG  TA  +L  +  L
Sbjct: 933 AQNKHVLEFRAEQIEQTFNCSRDKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSTL 990


>gi|193078597|gb|ABO13627.2| exonuclease putative [Acinetobacter baumannii ATCC 17978]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 23/146 (15%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYT---KIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           +     L++       P  N +Y     I N++  +   ++L+      F     +   F
Sbjct: 2   SEASALLDKTSIQQLPPFENLNYQNIVVIENSEQCKTIEEELKAATFLGFDSE--SKPTF 59

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               +    ST       + + +     ++  T              L +L+    N   
Sbjct: 60  QVGEV----STGPHLIQLATEHKAYLFHVNSST--------------LKFLQPILSNPKQ 101

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFED 488
           +K+G  +K DK + H+ GI +    D
Sbjct: 102 IKVGFGLKNDKHIFHKKGIKLESCID 127


>gi|291393208|ref|XP_002713065.1| PREDICTED: XPG-complementing protein isoform 2 [Oryctolagus
           cuniculus]
          Length = 1203

 Score = 45.4 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 26/210 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP +E    EA+   A      +  G     I+ D D+    +         
Sbjct: 784 QELLRLFGIPYVEAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 838

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 839 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 896

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE ++  +   ++ ++ + I       ++ +KL                      +    
Sbjct: 897 LEPLVKFSEWWQEAQKNQKIRPNPHDTKVKKKLRKLQLAPGFPNPAVAEAYLKPVVDDSK 956

Query: 260 EHLILEDCNGPRLISFLKALEFTKLINRVA 289
              +    +  ++  +   L   +   R  
Sbjct: 957 GAFLWGKPDPDKIREYPFILTACRFCQRYF 986


>gi|157828635|ref|YP_001494877.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933351|ref|YP_001650140.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157801116|gb|ABV76369.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908438|gb|ABY72734.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 281

 Score = 45.4 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 76/212 (35%), Gaps = 27/212 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N K ++++  +L      S     +    ++++      S +  K +    +    
Sbjct: 2   QIIDNQKILEEFCNRLANKACLSIDTEFERRYTYYAQL-----SIIQVKAEEYCGI---- 52

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFE 487
                         + L+   L+   K   + +  KI H  + D  + +    ++     
Sbjct: 53  -------------IDALSNLDLNIFNKLLADNNITKIFHAPREDLEIFYNLFKTLPANVF 99

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + + +   G+       +  K +  T   I K+ + S  + +   S +  +A+ +  
Sbjct: 100 DIQIAANICGFGKQL-SYDDLCYKLIGIT---IDKTHQKSHWLKRPITSDMLNYAMLDVE 155

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            + +++  L   ++   L + Y+     ++DV
Sbjct: 156 YLYKIYKELNNIIVRNNLTNKYQTTLSALLDV 187


>gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
 gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus]
 gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
          Length = 1465

 Score = 45.4 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  +    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIIEQFDEFINPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T     G   + +++L   + F +    + + HN  +D   ++    RYG++   +   D
Sbjct: 482 TDNHLVGAKPI-QQVLEAFQAFCQ--GTILVAHNASFDVGFMNANYDRYGLAKISQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L      H +  + +++
Sbjct: 539 TLELARNLYPEYKRHGLGPLTKRF 562


>gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 1465

 Score = 45.4 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  +    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIIEQFDEFINPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T     G   + +++L   + F +    + + HN  +D   ++    RYG++   +   D
Sbjct: 482 TDNHLVGAKPI-QQVLEAFQAFCQ--GTILVAHNASFDVGFMNANYDRYGLAKISQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L      H +  + +++
Sbjct: 539 TLELARNLYPEYKRHGLGPLTKRF 562


>gi|306818778|ref|ZP_07452500.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
 gi|304648464|gb|EFM45767.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
          Length = 422

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 8/173 (4%)

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF-EN 459
           A   + +A    ++    + +           V   ++ TG   +       L+      
Sbjct: 45  ARVCELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEPLGTAI 104

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
                I H+   D   L   G+  +   D  L + +L+       + S+ ++ L    + 
Sbjct: 105 GKAEWILHDATTDMPWLAEIGMRPKLLFDTELAAKLLN--FERFGLGSLTEQVLGIMLE- 161

Query: 520 ILKSRKSSIPIDKISDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
                 S+         Q   E+A  +   ++ L   L  +L         E+
Sbjct: 162 ---KEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQ 211


>gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1]
          Length = 1462

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSNATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|229523996|ref|ZP_04413401.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
 gi|229337577|gb|EEO02594.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
          Length = 381

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMLDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWD 185


>gi|195451328|ref|XP_002072866.1| GK13832 [Drosophila willistoni]
 gi|194168951|gb|EDW83852.1| GK13832 [Drosophila willistoni]
          Length = 913

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 92/289 (31%), Gaps = 32/289 (11%)

Query: 275 FLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334
              A    +   +     D +A N     L       K +A+  E +    I++      
Sbjct: 196 LFTAKNIMRPQLQFKELIDNNAQNPFLPRLREKPNSLKPLALLPEYNEAGNIQSYLHPYE 255

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
            +          P +  ++         + N     + N + +QQ V++L      +  +
Sbjct: 256 FELLKF-----EPPQGQMQTQSPELPASMGNTELMLVDNLEKLQQAVKELSEASQIAIDV 310

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
              +   F      + I+ L Q    S               +D      + +E +  L 
Sbjct: 311 EHHSYRTF------MGITCLVQMSTCS---------------KDYIFDTLVLREDMQLLN 349

Query: 455 KFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
               +   LKI H    D   L R   + +    D    +  L+  R      S+A    
Sbjct: 350 LVMTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARL-----SLAFLLK 404

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            Y   ++ KS + +    +    ++  +A ++++ ++ ++  L   L+ 
Sbjct: 405 HYVDLDVDKSLQLADWRMRPLPQELINYARQDTHYLIYVYQCLTNDLLK 453


>gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408]
          Length = 1462

 Score = 45.4 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSNATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405]
 gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678]
 gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058]
          Length = 1462

 Score = 45.4 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSNATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|293610667|ref|ZP_06692967.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827011|gb|EFF85376.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 20/146 (13%)

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           SE           Q      +N+ +   I N +  +   ++L+      F     +   F
Sbjct: 2   SEAVALLDKASIQQLPPFENLNHHNIVVIENIEQCKSIEEELKNAAILGFDSE--SKPTF 59

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               +   IST       +   +     ++  T              L +L+    N+  
Sbjct: 60  K---VG-EISTGPHLIQLATAQKAYLFHVNSST--------------LKFLQPILSNQKQ 101

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFED 488
           +K+G  +K DK + H+ GI +    D
Sbjct: 102 IKVGFGLKNDKHIFHKKGIELESCVD 127


>gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
 gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
          Length = 1465

 Score = 45.4 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  +    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIIEQFDEFINPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T     G   + +++L   + F +    + + HN  +D   ++    RYG++   +   D
Sbjct: 482 TDNHLVGAKPI-QQVLEAFQAFCQ--GTILVAHNASFDVGFMNANYDRYGLAKISQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L      H +  + +++
Sbjct: 539 TLELARNLYPEYKRHGLGPLTKRF 562


>gi|53803525|ref|YP_114794.1| ribonuclease D [Methylococcus capsulatus str. Bath]
 gi|53757286|gb|AAU91577.1| ribonuclease D [Methylococcus capsulatus str. Bath]
          Length = 388

 Score = 45.4 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 90/266 (33%), Gaps = 45/266 (16%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
           +        +Y  I +  ++  + + +      +          ++ K   + I+   Q 
Sbjct: 1   MPATMPPPINY--IDSPAELAAFCRSIGGSPWIAVDTEFMRDKTYYPKFCLLQIANGTQA 58

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVL 476
                        L++              E L  ++    N    K+ H  + D ++  
Sbjct: 59  --------ACIDPLAI--------------EDLREVECLLFNRAITKVFHAARQDLEIFF 96

Query: 477 HRYGISMRGFEDIMLMSYVL-DSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS 534
           HR+        D  L + ++    +  +  AS+    L  T  KE  ++  S  P+    
Sbjct: 97  HRFRAVPAPIFDTQLAAPLVGHPEQVGY--ASLVSAMLGVTVDKEHTRTDWSQRPLS--- 151

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDV----VSQMEIT 586
            +  +E+A  +   +  L+  +R +L        L+  +  L++P + V     +   I 
Sbjct: 152 -AAQKEYAANDVIHLAALYPRMREQLERLGRYAWLVDEFAALEEPDLYVNRPEDAWQRIG 210

Query: 587 GIQIDQDLLKQVSAEISKNLLSLEEN 612
           G+    D LK     ++  L +  EN
Sbjct: 211 GL----DRLKPEQFALAVRLAAWREN 232


>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
 gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
          Length = 1451

 Score = 45.4 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 53/154 (34%), Gaps = 16/154 (10%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT------ 435
             L       + + T  +       I      +++ +    K   +   + ++       
Sbjct: 392 DSLSDTAYVVYDLETTGLSCSFDHIIEFGAVVIERGEIKETKQLFVKPPVPINAFISEKT 451

Query: 436 --SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM--RGFE 487
             + +   +     E+   L  F  ++  + + HN  +D   L     R G++       
Sbjct: 452 NITNEDVAQAKPFAEVAQELVDFIGDK--VLVAHNATFDYNFLNEELKRIGMAPLTNPVV 509

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D + ++  L S R S+ + +IA+ +     +E+ 
Sbjct: 510 DTLDLARALHSDRRSYRLGNIARHYRITYDEEVA 543


>gi|221052342|ref|XP_002257747.1| dna binding protein [Plasmodium knowlesi strain H]
 gi|193807578|emb|CAQ38083.1| dna binding protein, putative [Plasmodium knowlesi strain H]
          Length = 470

 Score = 45.4 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
           N L  +I   +K+  E+E   K+ H+I+ DK +     I +R   D  L  + + +    
Sbjct: 165 NKLKGKIPMCVKEIMEDEKIKKVCHDIRNDKDMFEDQDIQIRNTFD--LYDFCMKNYLYP 222

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
             +  + + +L   +K + K  + S  +      +   +A  ++    +++++L+ 
Sbjct: 223 PSLQFLVKLFL---KKNLEKHFRLSNWLSHDLKEEQILYAAADAYASREVYMVLKE 275


>gi|15641986|ref|NP_231618.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591319|ref|ZP_01678609.1| ribonuclease D [Vibrio cholerae 2740-80]
 gi|147675516|ref|YP_001217510.1| ribonuclease D [Vibrio cholerae O395]
 gi|153819311|ref|ZP_01971978.1| ribonuclease D [Vibrio cholerae NCTC 8457]
 gi|227082111|ref|YP_002810662.1| ribonuclease D [Vibrio cholerae M66-2]
 gi|229507927|ref|ZP_04397432.1| ribonuclease D [Vibrio cholerae BX 330286]
 gi|229511838|ref|ZP_04401317.1| ribonuclease D [Vibrio cholerae B33]
 gi|229518974|ref|ZP_04408417.1| ribonuclease D [Vibrio cholerae RC9]
 gi|229607472|ref|YP_002878120.1| ribonuclease D [Vibrio cholerae MJ-1236]
 gi|254849070|ref|ZP_05238420.1| ribonuclease D [Vibrio cholerae MO10]
 gi|298497984|ref|ZP_07007791.1| ribonuclease D [Vibrio cholerae MAK 757]
 gi|9656525|gb|AAF95132.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546819|gb|EAX56983.1| ribonuclease D [Vibrio cholerae 2740-80]
 gi|126510131|gb|EAZ72725.1| ribonuclease D [Vibrio cholerae NCTC 8457]
 gi|146317399|gb|ABQ21938.1| ribonuclease D [Vibrio cholerae O395]
 gi|227009999|gb|ACP06211.1| ribonuclease D [Vibrio cholerae M66-2]
 gi|227013881|gb|ACP10091.1| ribonuclease D [Vibrio cholerae O395]
 gi|229343663|gb|EEO08638.1| ribonuclease D [Vibrio cholerae RC9]
 gi|229351803|gb|EEO16744.1| ribonuclease D [Vibrio cholerae B33]
 gi|229355432|gb|EEO20353.1| ribonuclease D [Vibrio cholerae BX 330286]
 gi|229370127|gb|ACQ60550.1| ribonuclease D [Vibrio cholerae MJ-1236]
 gi|254844775|gb|EET23189.1| ribonuclease D [Vibrio cholerae MO10]
 gi|297542317|gb|EFH78367.1| ribonuclease D [Vibrio cholerae MAK 757]
          Length = 381

 Score = 45.4 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWD 185


>gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1087

 Score = 45.4 bits (106), Expect = 0.050,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 400  DAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
            D    + I I +    D KD     + T+   LS  +S        L+K +  +LK  FE
Sbjct: 890  DLLQHQIIGIDLEYWTDNKDQKLSFICTLQ--LSTLSSNFVIDILNLSKSVSVHLKSIFE 947

Query: 459  NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYV-LDSGRSSHDIASIAQKWLSYT 516
            +  F+K+ H  + D  +L +    ++    D     Y+  + G  S  ++S++Q++L+Y 
Sbjct: 948  SPKFVKVFHGGETDLKLLKKDLNFNLVNIFDTAKA-YLKQNKGAGSVSLSSLSQQYLNYN 1006

Query: 517  RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
               + K  ++S    +     +  +A+ +S + L L+ +++  +  E L
Sbjct: 1007 ---VDKQYQTSDWRIRPLPKPMLNYAMYDSFITLILFFVMKSTISQEDL 1052


>gi|325963971|ref|YP_004241877.1| DNA polymerase III subunit epsilon [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470058|gb|ADX73743.1| DNA polymerase III, epsilon subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 236

 Score = 45.4 bits (106), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 19/111 (17%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQK----------DDTSFKVETIFIDL----SVHT 435
           A+F + T   ++  ++ +  +++ +D +           D   ++ T   D+    +   
Sbjct: 10  AAFDLETTGRNSRAARIVTASVTVVDHQAEVMREHEWLADPGVEIPTEASDVHGITTEQA 69

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS 482
            ++    + +T+E+ + L++ F + +   I  N  YD  VL     RYGI 
Sbjct: 70  RREGRPAHEVTREVAAALQELF-DSNIPVIAFNASYDFTVLAAESARYGIP 119


>gi|254580281|ref|XP_002496126.1| ZYRO0C11110p [Zygosaccharomyces rouxii]
 gi|238939017|emb|CAR27193.1| ZYRO0C11110p [Zygosaccharomyces rouxii]
          Length = 610

 Score = 45.4 bits (106), Expect = 0.052,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 89/262 (33%), Gaps = 45/262 (17%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD--- 66
           +DG ++++RA  A           P      +     K L   R   I  +   +FD   
Sbjct: 29  IDGYAWLHRA--ACSCAYELAVSKPTE---KYLRFFIKKLAMLRSFKIQPYL--VFDGDG 81

Query: 67  --------YPAVTFRNEIYPDYKA------NRPKIP------EMLLPQLPLVRLATQAFG 106
                         R E     K        R  +       ++       V    +A  
Sbjct: 82  IGVKKETESKRREKREESRAVAKRLWESGERRNAMEYFQKCADVTPEMAKCVIDYCKAQN 141

Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM--------QLVSPTTCLYDTV 158
           IP +    FEAD  +       EK GF   I+S D DL+          ++      +  
Sbjct: 142 IPYVVAP-FEADAQMVYL----EKNGFIQGILSEDSDLLIFGCRRLITKLNDFGECIEIC 196

Query: 159 KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
           +++   + +      + P+++  +  L G   D   GIP +G  TA  L+Q +  LE IL
Sbjct: 197 RDDFCKLPYKFALNKLTPQEIRTMVCLAG--CDYTSGIPKVGLVTAMKLVQRFRTLERIL 254

Query: 219 INASRIKQKKRRENILEYAETA 240
           ++  R  + K     +   E A
Sbjct: 255 LHVQREGKLKVPPEFISEYELA 276


>gi|58617449|ref|YP_196648.1| ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58417061|emb|CAI28174.1| Ribonuclease D [Ehrlichia ruminantium str. Gardel]
          Length = 389

 Score = 45.4 bits (106), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 77/209 (36%), Gaps = 30/209 (14%)

Query: 370 KIVNTKDIQQWVQKL--ETIGSASFKIIT-DTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            I  T  +Q    +L        +         + ++ +   I I+    K         
Sbjct: 5   LIDTTGKLQDVCSQLLMSCPKFIAVDTEFIRNCNEYYPRLSLIQIAWSKGKCVI------ 58

Query: 427 IFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMR 484
                           + L  +I LS L+  F N+  +KI H+ K D   L  ++     
Sbjct: 59  ----------------DVLADDIDLSVLESIFYNKEIVKIFHDCKQDIDALLTKFPRIPY 102

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D  + +       ++   + +  ++L  +  ++   R + + +  +SD ++ ++A++
Sbjct: 103 PIFDSQIAAMFCAYYDNAVGYSKLVAQFLDVSLDKLTLKRSNWL-MRPLSDDKI-QYALD 160

Query: 545 NSNVILQLWLLLRPKLIVEK-LLHVYERL 572
           +   + +L+ +L   LI  K LL   E +
Sbjct: 161 DVVYLYELYQVLYDNLISSKRLLWFLEEM 189


>gi|170770112|ref|ZP_02904565.1| ribonuclease D [Escherichia albertii TW07627]
 gi|170121069|gb|EDS90000.1| ribonuclease D [Escherichia albertii TW07627]
          Length = 375

 Score = 45.4 bits (106), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 55/202 (27%), Gaps = 29/202 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEKLL 566
           +   +L +   L  +      L
Sbjct: 155 DVRYLLPITTKLMAETEASGWL 176


>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 663

 Score = 45.4 bits (106), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           + L       F + T  + A +     I ++ +        +    FID     S+ +  
Sbjct: 420 EALSEATYVVFDVETTGLSAVYDTI--IELAAVKMYKGNVIESFDEFIDPGHPLSRTTVD 477

Query: 442 KNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
              +T  ++         L+ F E ++  + + HN  +D   L     RYGI        
Sbjct: 478 LTGITDGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVI 537

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + ++  L        +  +++K+
Sbjct: 538 DTLELARYLYPQFKRFGLGVLSKKF 562


>gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1449

 Score = 45.4 bits (106), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD-----DTSFKVETIFIDLSVHTSQD 438
           L       F   T  +   + + I IA   +          T    +        + +  
Sbjct: 404 LNLATYVIFDFETTGLSKINDQIIEIAAIKIQNNQIIDEFQTLINPQQELTPFIENLTNI 463

Query: 439 STGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL-----HRYGISMR-GFEDIM- 490
           S         I + L KF +  E+ + I HNI +D   L         + +   F D + 
Sbjct: 464 SNQDLKNQPLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLNLKLNLPFIDTLN 523

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
           L  Y LDS     ++ S+A+ +
Sbjct: 524 LARYCLDSNLRYFNLKSLAKYF 545


>gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
 gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
          Length = 382

 Score = 45.4 bits (106), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 453 LKKFF---ENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LK FF    NE+ LK+ H  + D  +V HR GI      D  + + VL  G S      +
Sbjct: 62  LKPFFDLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYGDSI-AYDQL 120

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            ++   +   +    R +      ++D Q+  +A+ +   +  ++  L   L    
Sbjct: 121 VERITGHRPDKTH--RFTDWSRRPLTDEQL-HYAVSDVTHLRDVFAALDADLKQRG 173


>gi|302665075|ref|XP_003024151.1| Rad2-like endonuclease, putative [Trichophyton verrucosum HKI 0517]
 gi|291188195|gb|EFE43540.1| Rad2-like endonuclease, putative [Trichophyton verrucosum HKI 0517]
          Length = 768

 Score = 45.4 bits (106), Expect = 0.054,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 38/204 (18%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
             +FD P         PDYK  R         Q+ L R   + F  P     G EA+   
Sbjct: 75  IFVFDGPHR-------PDYKRGRLVSKNAAAAQIELSRKLIELFSYPCHMAPG-EAE--- 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--------EKIDIEHVIKKWG 173
                  ++ G    ++S D D + +      L +  K           +D+ +   + G
Sbjct: 124 -AECAKLQQAGVVDAVMSNDVDAL-MFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDG 181

Query: 174 -----IPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL-QEYGNLENILINASRI-- 224
                +    M+ +  L+G   D  P G+   G K A  +    +G  E++L     +  
Sbjct: 182 DSKVTLDTRGMILVALLSG--GDYSPAGVALCGPKLAVEIARAGFG--EDLLEITQDLLS 237

Query: 225 --KQKKRRENILEYAETARLSRKL 246
               KK  E + E+ E  RL  +L
Sbjct: 238 GRSTKKAEEALCEWRE--RLQYEL 259


>gi|291393206|ref|XP_002713064.1| PREDICTED: XPG-complementing protein isoform 1 [Oryctolagus
           cuniculus]
          Length = 1188

 Score = 45.4 bits (106), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 26/210 (12%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP +E    EA+   A      +  G     I+ D D+    +         
Sbjct: 769 QELLRLFGIPYVEAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 823

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 824 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 881

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKL--------------VMLRTDVPITIPL 259
           LE ++  +   ++ ++ + I       ++ +KL                      +    
Sbjct: 882 LEPLVKFSEWWQEAQKNQKIRPNPHDTKVKKKLRKLQLAPGFPNPAVAEAYLKPVVDDSK 941

Query: 260 EHLILEDCNGPRLISFLKALEFTKLINRVA 289
              +    +  ++  +   L   +   R  
Sbjct: 942 GAFLWGKPDPDKIREYPFILTACRFCQRYF 971


>gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
 gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
          Length = 1463

 Score = 45.4 bits (106), Expect = 0.055,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNI 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        K++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLKQVLQEFQEFCQD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.055,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 39/230 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I I    L     T   +             D+   + +T E L 
Sbjct: 6   FDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLK 65

Query: 452 YLKKFFENE--------HFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSYVL 496
             K F E              I HN  +D         R G   I      D + M+   
Sbjct: 66  DKKAFAEVAEEILAFFGDAKWIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARRK 125

Query: 497 DSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPIDKISDSQV 538
           +     + + ++ +++                  L+    E++  R++++ + +   +  
Sbjct: 126 NP-MGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLGQSGQAAG 184

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588
            E A+E+   IL++    RP+ +  +L     +  + ++   +++   GI
Sbjct: 185 GEMAMEDDGAILEVLE--RPRPLAPRLSQAEAQAHEALV---AKLGEKGI 229


>gi|163792851|ref|ZP_02186827.1| Ribonuclease D [alpha proteobacterium BAL199]
 gi|159181497|gb|EDP66009.1| Ribonuclease D [alpha proteobacterium BAL199]
          Length = 386

 Score = 45.4 bits (106), Expect = 0.055,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 64/211 (30%), Gaps = 29/211 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
           T + +T  +     +L      +          +++K   + ++  D  +  +       
Sbjct: 2   TLVTDTASLSALCDRLARERYVAVDTEFMRDKTYYAKLCLVQLAGAD--EAVAVDTLAPG 59

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFE 487
           ID                   L+ L     N   LK+ H  + D  +  H+         
Sbjct: 60  ID-------------------LAPLYALMANPDVLKVFHAARQDVEIFVHQADAVPAPLF 100

Query: 488 DIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D  + + V       S+D   + +        +   SR +      +S  Q+ E+A+ + 
Sbjct: 101 DTQIAAMVCGFGDAVSYD--RLVRGLTGVKLDKT--SRFTDWSHRPLSSRQI-EYALADV 155

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
             +   +  L  KL     L      +  ++
Sbjct: 156 IHLRPAYEKLHRKLEKTGRLEWLSE-EMAVL 185


>gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
 gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
          Length = 230

 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 47/224 (20%)

Query: 392 FKIITDTMDAFHSK-PIAIAISTLDQKDDTSFKVETIFID--------LSVH-TSQDSTG 441
           F   T   D       + I    L  +  T       +           +VH  S D   
Sbjct: 6   FDTETTGFDPASGDRMVEIGCIELVNRVPTGRTFHAYYHPERDMPAAAFAVHGLSADFLA 65

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG--------FEDIMLMS 493
           K+ +       L  F E+     + HN ++D   L  + +++ G          D + ++
Sbjct: 66  KHPVFSLGALELLDFLED--SPLVAHNARFDFGFL-NHELTLCGHPQVGMHRMIDTVAIA 122

Query: 494 YVLDSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPIDKISD 535
             L  G   H + ++  ++                  L+    E+   R+  + +     
Sbjct: 123 RQLHPGA-KHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYIELTGGRQIGLGL----- 176

Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
              QE A E   V L    ++RP       +   + L++    V
Sbjct: 177 --AQEEAKEIVRVELTESPVVRPVRPARVFMASAQELERHAAFV 218


>gi|227875468|ref|ZP_03993609.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
 gi|227844022|gb|EEJ54190.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
          Length = 397

 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 8/173 (4%)

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN- 459
           A   + +A    ++    + +           V   ++ TG   +       L+      
Sbjct: 20  ARVCELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEPLGAAI 79

Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
                I H+   D   L   G+  +   D  L + +L+       + S+ ++ L    + 
Sbjct: 80  GKAEWILHDATTDMPWLAEIGMRPKLLFDTELAAKLLN--FERFGLGSLTEQVLGIMLE- 136

Query: 520 ILKSRKSSIPIDKISDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
                 S+         Q   E+A  +   ++ L   L  +L         E+
Sbjct: 137 ---KEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQ 186


>gi|156095069|ref|XP_001613570.1| DNA binding protein [Plasmodium vivax SaI-1]
 gi|148802444|gb|EDL43843.1| DNA binding protein, putative [Plasmodium vivax]
          Length = 481

 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
           N L  +I   +K+  E+E   K+ H+I+ D+ +     + +R   D  L  + + S    
Sbjct: 157 NKLKGKIPMCVKEIMEDEKIRKVCHDIRNDQDMFLDQHVQIRNSFD--LYDFCMQSFLYP 214

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             +  + + +L   +K + K  + S  +      +   +A  ++    +++++LR
Sbjct: 215 PSLQFLVKLFL---KKNLEKQFRLSNWLSDDLREEQILYAAADAYASREVYMVLR 266


>gi|328462335|gb|EGF34411.1| DNA polymerase [Lactobacillus helveticus MTCC 5463]
          Length = 43

 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 210 EYGNLENILINASRIKQKKRRENILEYAETAR 241
           +YG++E I  +   +K+ K +EN++   + A 
Sbjct: 12  KYGSVEGIYDHIDEMKKSKLKENLINDKDKAI 43


>gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
 gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
          Length = 1444

 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLS 432
            +L+      F + T  + A + K I ++         ++  D+  D  F +     +L+
Sbjct: 416 AQLKDNTYVIFDVETTGLSAIYDKVIELSAVKMKNGEVLARFDEFIDPGFPLSEQTTNLT 475

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGF 486
             T +   G  +  +E+    K F      +  GHN+ +D   +     R+ +       
Sbjct: 476 SITDEMVRGSKS-EEEVFKMFKDFCA--GTIIAGHNVSFDMGFMNTGYRRHQMEEITEPV 532

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            D + ++  L      + + ++++K+   L +  +    +  +   + K      + + I
Sbjct: 533 IDTLPLARFLYPNMRGYRLNTLSKKFKVALEHHHRANFDAEATGHLLYKFLKDAEKRYEI 592

Query: 544 ENSNVILQ 551
              + + Q
Sbjct: 593 RYVDELNQ 600


>gi|239946745|ref|ZP_04698498.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921021|gb|EER21045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 281

 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 78/213 (36%), Gaps = 29/213 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N K ++++  +L      S     +    ++++      S +  K +    +    
Sbjct: 2   QIIDNQKTLEEFCNRLANKACLSIDTEFERRYTYYAQL-----SIIQVKAEEYCGI---- 52

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
                         + L+   L+   K   + +  KI H  + D  + +  + I      
Sbjct: 53  -------------IDALSNLDLNIFNKLLADNNITKIFHAPREDLEIFYNLFKILPSNVF 99

Query: 488 DIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           DI + + +     + S++   +  K +  T   I K+ + S  + +   S +  +A+ + 
Sbjct: 100 DIQIAANICGFGKQLSYN--DLCYKLIGIT---IDKTHQKSNWLKRPITSDMLNYAMLDV 154

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
             + +++  L   +I   L + Y+     ++DV
Sbjct: 155 EYLYKIYKELNNIIIRNNLTNKYQTTLSSLLDV 187


>gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330]
          Length = 1462

 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|19881432|ref|NP_612249.1| putative DNA repair protein [Infectious spleen and kidney necrosis
           virus]
 gi|19773637|gb|AAL98751.1|AF371960_27 putative DNA repair protein [infectious spleen and kidney necrosis
           virus]
          Length = 298

 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 21/149 (14%)

Query: 79  DYKANRPKI-----PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           DY  +R +      PE        +R     FG+P       E +     +       G 
Sbjct: 138 DYVEHRVRTHQAVTPED----YERMRAILTGFGVPY-TFARTEGE----MHCVQMVANGQ 188

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           A  +++ D D + + +  +  Y           ++ +  V+ K  + P + +    L G 
Sbjct: 189 ADLVMTIDTDAILVSALHSVPYVLTNFKAGCFRQVSVHEVLDKCHMTPAQFLDFCILLG- 247

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENI 217
             D    I GIG+  A  L++ +G+++N+
Sbjct: 248 -TDFNKHIRGIGHVKARNLIKTHGSIDNM 275


>gi|5689765|emb|CAB52135.1| Nucleotide excision repair protein [Drosophila melanogaster]
          Length = 378

 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 96/342 (28%), Gaps = 44/342 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 5   CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATDLTHGT--ITDDSDIWLFGGRTVYKNFF 59

Query: 158 VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 60  AQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGQ 117

Query: 215 ENILINASRIKQKKRRENILEYAE--------------TARLS--RKL------------ 246
           +    N   I  +   + ++++ +              +ARL+  +KL            
Sbjct: 118 D---ANGPGICNQSVLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSG 174

Query: 247 --VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
             V       I    +       +   +        F    ++           I    +
Sbjct: 175 AVVEAYLAPTIDDNRDAFSWGTPDVESIRE-FTRKSFGWTTSKTDDILMPVMKKINEKKI 233

Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
             +            + +    K  Q +          + + P+K+   R  K +    +
Sbjct: 234 QGSIRNYFTAKSALRVQQPHVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDD 293

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
           + +   +       +  ++     S        +      KP
Sbjct: 294 DLAIADVATKAARPKRGKRKAAPESVVLDGELPSTSQSIPKP 335


>gi|251792786|ref|YP_003007512.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
 gi|247534179|gb|ACS97425.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
          Length = 385

 Score = 45.0 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 56/202 (27%), Gaps = 27/202 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             N   +  I   + + +         + +          F+ K   I +   D+     
Sbjct: 8   CKNAPHFKLITEDESLAEVCALAGQQSAVALDTEFVRTRTFYPKLGLIQLYAGDEVALID 67

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481
                 F                              +E   K+ H    D  V   Y  
Sbjct: 68  PTTIQDFSPFIA----------------------LLADERVTKVLHASGEDLEVFQHYFQ 105

Query: 482 SM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            + +   D  +++  L    +S   A++ + +      EI K    +  + +       +
Sbjct: 106 QLPQPMCDTQVVANFL-GFANSPGFATLVKHYFQI---EIDKGASCTDWLARPLSDTQLQ 161

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +A  +   +L L+  ++ +L  
Sbjct: 162 YAAADVWYLLPLYQQMKAQLAQ 183


>gi|254486025|ref|ZP_05099230.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214042894|gb|EEB83532.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 385

 Score = 45.0 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 69/212 (32%), Gaps = 23/212 (10%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T +++ +  +  T    +          ++SK   I ++     D  +  V+ + 
Sbjct: 2   KTITTTAELEAYCLEAATHDYVTIDTEFLRERTYYSKLCLIQMAMPGTDDSGAVLVDPLA 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
            D+S                 L  L   F +   +K+ H  + D  +     G+      
Sbjct: 62  GDMS-----------------LEPLYALFRDTSVVKVFHAARQDLEIFFVDAGVFPEPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V   G       ++ +K      + + K+ + +    +       ++A+ +  
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVRK---IAHQAVDKTSRFTDWSRRPLTDAQAKYALADVT 160

Query: 548 VILQLWLLLRPKLIVEK-LLHVYERLDKPMID 578
            + Q++  L  KL        V E L+     
Sbjct: 161 HLRQVYEFLARKLEETGRARWVAEELEILTSP 192


>gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059]
          Length = 1462

 Score = 45.0 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|212545983|ref|XP_002153145.1| hypothetical protein PMAA_010410 [Penicillium marneffei ATCC 18224]
 gi|210064665|gb|EEA18760.1| hypothetical protein PMAA_010410 [Penicillium marneffei ATCC 18224]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 57/149 (38%), Gaps = 23/149 (15%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSH--DIASIA 509
           LK   E     K+  +++ D   +   +GI ++  +D+ +M   +  G   +   +A   
Sbjct: 83  LKTILEAPSIPKVFFDVRNDSDAMCSHHGIRLQCVKDLQVMELAVRFGSQKYVAGLAKCI 142

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISD----------------SQVQEHAIENSNVILQLW 553
           +   +    E+ K ++    + ++ D                + + ++  ++  ++  LW
Sbjct: 143 ENHANLPPIELQKWKQIKASVGQLWDPRRGGSYQVFNQRPIRTDIIQYCAQDVTILPSLW 202

Query: 554 LLLRPKLIVEKL----LHVYERLDKPMID 578
            +   KL   +       V+  ++K + +
Sbjct: 203 NVYHQKLRQPQSGFWRCMVFYNVEKRIAE 231


>gi|254286913|ref|ZP_04961865.1| ribonuclease D [Vibrio cholerae AM-19226]
 gi|150423063|gb|EDN15012.1| ribonuclease D [Vibrio cholerae AM-19226]
          Length = 381

 Score = 45.0 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWE 185


>gi|222825102|dbj|BAH22259.1| putative ribonuclease D [Wolbachia endosymbiont of Cadra cautella]
          Length = 394

 Score = 45.0 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 57/139 (41%), Gaps = 4/139 (2%)

Query: 443 NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGR 500
           + L  EI LS++KK   N+  +K+ H+ + D   +L  +        D  + +       
Sbjct: 56  DALVPEIDLSFIKKMMLNQGIIKVFHSCRQDIESLLTVFKCVPTPIFDTQVAAMFCHYYH 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
                + + +++      +I    K+S  + +       ++AI +   +  L+ +L  KL
Sbjct: 116 DFIGYSKVVEQYQGIALDKI--KAKNSDWLRRPLSEDQLDYAINDVVYLYDLYQILCNKL 173

Query: 561 IVEKLLHVYERLDKPMIDV 579
                +  ++   + ++D+
Sbjct: 174 EESNRMSWFQEEMELLVDI 192


>gi|309784631|ref|ZP_07679266.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
 gi|308927528|gb|EFP73000.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
          Length = 66

 Score = 45.0 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773
           +R   I+P  KKL+ +D S IE R+LA +A        F  
Sbjct: 8   LRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFRE 48


>gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA04375]
          Length = 1463

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 62/168 (36%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  ++      L       F + T  + A ++  I +A         
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +  + +     +L+   + D        +++L   ++F ++   + + HN  
Sbjct: 456 IAEFDEFINPGYPLSAFTTELTG-ITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNAT 512

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 513 FDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150]
          Length = 1462

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 65/174 (37%), Gaps = 23/174 (13%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--- 410
           +L    +  I  D    + N  D++     L       F + T  + A ++  I +A   
Sbjct: 394 QLIYSMEANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASK 448

Query: 411 ------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464
                 I+  D+  +    +     DL+  T +       L +++L   ++F ++   + 
Sbjct: 449 MHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVL 505

Query: 465 IGHNIKYDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           + HN  +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 506 VAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353]
          Length = 1462

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 15/144 (10%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLS------V 433
             LE      F + T  + A +   I +A   +      D          +LS       
Sbjct: 414 ALLEEETFVVFDLETTGLSAVYDTIIELAAVKIKGGQIIDKFESFANPHHELSSTTIDLT 473

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS-MRGFED 488
             + D        +E++    ++  +   + + HN  +D   L     +YGI  +    D
Sbjct: 474 GITDDMVKNAPEVEEVIRKYHEWAGD--HIMVAHNASFDMGFLYVCYKKYGIDTVHATID 531

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++ +L     +H + ++A+K+
Sbjct: 532 TLELARMLHPELKNHRLNTLAKKF 555


>gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
 gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
          Length = 1462

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPQITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|156089519|ref|XP_001612166.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
 gi|154799420|gb|EDO08598.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
          Length = 230

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 10/118 (8%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
              +   LKI H    D  +++R+ G+  R F D  L S   +       + S+ Q+ L 
Sbjct: 112 ILSDPDILKISHGAPSDMRLMYRHFGVRSRSFVD--LQSVCEELQLRPCSLKSVVQRVLG 169

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP----KLIVEKLLHV 568
                + K ++ S         Q  ++A  ++ V L  +L L+P    KL+V +L  V
Sbjct: 170 LR---LSKKQQCSNWEAAELSQQQIKYAATDAWVTLAAFLKLKPKSLRKLVVNELGDV 224


>gi|149202482|ref|ZP_01879454.1| ribonuclease D [Roseovarius sp. TM1035]
 gi|149143764|gb|EDM31798.1| ribonuclease D [Roseovarius sp. TM1035]
          Length = 386

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 23/195 (11%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T D+  +          +          ++SK   + ++     DDT+  V+ I 
Sbjct: 2   KTITTTDDLAAFCAMARKHPYVTLDTEFLRERTYYSKLCLLQMAVPGADDDTAVLVDPID 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
                             +  +  L + F +   +K+ H  + D  + H   G+      
Sbjct: 62  G----------------AEMSMEPLYELFRDTSVVKVFHAARQDLEIFHVDAGVIPDPLF 105

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE-HAIENS 546
           D  + + V   G       ++ ++      K+ +          +   ++ Q+ +A+ + 
Sbjct: 106 DTQVAAMVCGFGEQV-GYETLVKR----IAKQTVDKSSRFTDWSRRPLTEAQKVYALADV 160

Query: 547 NVILQLWLLLRPKLI 561
             +  ++  L  KL 
Sbjct: 161 THLRVIYEYLAKKLA 175


>gi|153217090|ref|ZP_01950854.1| ribonuclease D [Vibrio cholerae 1587]
 gi|124113892|gb|EAY32712.1| ribonuclease D [Vibrio cholerae 1587]
          Length = 381

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWD 185


>gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638]
 gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638]
 gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68]
          Length = 231

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 15/94 (15%)

Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933
           S K           +    Q +A D+    M  +  +         ++L +HDE++ E P
Sbjct: 139 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDA------GYSIVLTVHDEIISEAP 192

Query: 934 EE---EITTASQIIVHSMEKACLPKINLRVPLKV 964
           +         SQ++      A +P     +PL  
Sbjct: 193 DSPDYSAEHVSQLL------ATVPDWATSIPLNA 220


>gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
 gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
          Length = 1462

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|312210218|emb|CBX90305.1| hypothetical protein [Leptosphaeria maculans]
          Length = 799

 Score = 45.0 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 93/297 (31%), Gaps = 45/297 (15%)

Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ----TSKINSE 344
                 +A   E +    +  ++       E+D DT       S    +     + + + 
Sbjct: 148 GAAMSANAEAPEGLSAPASPAKSTDQTTTQELDEDTPEAPEPLSYQIPEDRLRAAMLAAP 207

Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404
           +T    +  RL +  +       Y K  +  +     ++        F I          
Sbjct: 208 KTRGSYWSTRLYQGPEGEALKIHYCKSKDVAERVA--KRFLDQKVLGFDIEW-------- 257

Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS-YLKKFFENEHFL 463
           KP  I  S            E       +     S  + T  +E++   LK   E+    
Sbjct: 258 KPFGIPSSIKQNVSLIQLACEDR-----IALFHISLFEGTAVEELMPPSLKAVLESPDIY 312

Query: 464 KIGHNIKYDKLVLHRY-GISMRGFEDI-----MLMSYVLDSGRSSHDIASIAQKWLSYTR 517
           K+G  IK D   L RY GI  RG  ++     ++  Y  D  + ++ +  +A +   + +
Sbjct: 313 KVGVAIKGDFSRLARYLGIQARGVFELSRLHNLVQYYEADPKQVNNRLVGLAAQVHQHLQ 372

Query: 518 KEILKSRKSSIPIDKISDSQVQ---------------EHAIENSNVILQLWLLLRPK 559
             + K      P+D   ++                   +A  ++    +L+  L  K
Sbjct: 373 LPLYKGE----PLDDDPETSSSVRESDWSLPLGFSQIHYAAADAYAGFRLYDALERK 425


>gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115]
          Length = 1462

 Score = 45.0 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|153801848|ref|ZP_01956434.1| ribonuclease D [Vibrio cholerae MZO-3]
 gi|153829828|ref|ZP_01982495.1| ribonuclease D [Vibrio cholerae 623-39]
 gi|229515363|ref|ZP_04404823.1| ribonuclease D [Vibrio cholerae TMA 21]
 gi|229528995|ref|ZP_04418385.1| ribonuclease D [Vibrio cholerae 12129(1)]
 gi|124122620|gb|EAY41363.1| ribonuclease D [Vibrio cholerae MZO-3]
 gi|148874687|gb|EDL72822.1| ribonuclease D [Vibrio cholerae 623-39]
 gi|229332769|gb|EEN98255.1| ribonuclease D [Vibrio cholerae 12129(1)]
 gi|229348068|gb|EEO13027.1| ribonuclease D [Vibrio cholerae TMA 21]
          Length = 381

 Score = 45.0 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWD 185


>gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 485

 Score = 45.0 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 79/262 (30%), Gaps = 44/262 (16%)

Query: 318 TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI 377
            E   D+ ++     +L +      +  TP  +  E       +  +        +  D 
Sbjct: 230 VEPLPDSALQPGYILTLREAPMVDTACATPILMPRETA-----FDFDLLHARPSQDVMDC 284

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPI-AIAIS----TLDQKDDTSFKVETIFIDLS 432
                KL  +    F   T  +       +  IA          K +    +      + 
Sbjct: 285 -----KLGDLKYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIP 339

Query: 433 VHTSQDSTGKNTLTKEILSYL---KKF--FENEHFLKIGHNIKYDKLVLHRYGISM---- 483
           +  +      + +  +   +L   + F  F +   L I HN  +D    +R    +    
Sbjct: 340 LSATNIHGITDAMVADAPDFLTAGRAFHGFADGAVL-IAHNAPFDMAFFYRKQAEIGARF 398

Query: 484 -RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D +L+S V+      H + ++A++      +E                   +  A
Sbjct: 399 DHPVLDTVLLSAVIYGQTEQHSLDALAERLNVTIPEE------------------ARHTA 440

Query: 543 IENSNVILQLWLLLRPKLIVEK 564
           + ++    +++L L P L  + 
Sbjct: 441 LGDALATTEVFLKLLPMLQAKG 462


>gi|255745267|ref|ZP_05419216.1| ribonuclease D [Vibrio cholera CIRS 101]
 gi|262155992|ref|ZP_06029112.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
 gi|255737097|gb|EET92493.1| ribonuclease D [Vibrio cholera CIRS 101]
 gi|262030170|gb|EEY48814.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
          Length = 373

 Score = 45.0 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 28  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 87

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 88  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 143

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 144 LSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWD 177


>gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087]
          Length = 1462

 Score = 45.0 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
 gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
          Length = 1464

 Score = 45.0 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 16/144 (11%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAIS------TLDQKDDTSFKVET--IFIDLSVH 434
           +L       F + T  + A H+  I IA S       ++Q D+          F      
Sbjct: 420 ELNEATYVVFDVETTGLSAVHNDLIQIAASKMYKGNIVEQFDEFINPGHHLSAFTTELTG 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFED 488
            + +        +++L   + F ++   + + HN  +D   +     R+G+    +   D
Sbjct: 480 ITDNHVRNAKPIEQVLQMFQDFCKD--TVLVAHNATFDVGFMNANYKRHGMPTITQPVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L      H +  + +++
Sbjct: 538 TLELARNLYPEYKRHGLGPLTKRF 561


>gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
          Length = 1463

 Score = 45.0 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LSV T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSVFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 1464

 Score = 45.0 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAIS------TLDQKDDTSFKVET--IFIDLSVH 434
           +L       F + T  + A +++ I IA S       ++Q D+          F      
Sbjct: 420 ELNEATYVVFDVETTGLSAVNNELIQIAASKMYKGNIVEQFDEFINPGHHLSAFTTELTG 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
            + +        +E+L   + F ++   + + HN  +D   ++    R+G+ +  +   D
Sbjct: 480 ITDNHVRNAKPIEEVLQMFQDFCQD--TVLVAHNATFDVGFMNANYERHGMPIITQPVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 538 TLEFARNLYPEYKRHGLGPLTKRF 561


>gi|307131134|ref|YP_003883150.1| ribonuclease D [Dickeya dadantii 3937]
 gi|306528663|gb|ADM98593.1| ribonuclease D [Dickeya dadantii 3937]
          Length = 373

 Score = 45.0 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 58/203 (28%), Gaps = 29/203 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I   + +     +   +   +          ++ +   I +   D           
Sbjct: 2   NYQLITTDEGLSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLS-------- 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L++                 +  +   +N    K  H    D  V    +G     
Sbjct: 54  LIDPLAIRDW--------------APFRALLQNPQVTKFLHAGSEDLEVFLNAFGGLPSP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           F D   L +++      S+  A++   +    +  + KS   +  + +    +  ++A  
Sbjct: 100 FIDTQILAAFLGKP--LSYGFAALVADY---RQVALDKSESRTDWLARPLSEKQCQYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEKLLH 567
           +   +L +   L  +      L 
Sbjct: 155 DVFYLLPVARTLVEETRAAGWLE 177


>gi|153826834|ref|ZP_01979501.1| ribonuclease D [Vibrio cholerae MZO-2]
 gi|149739355|gb|EDM53601.1| ribonuclease D [Vibrio cholerae MZO-2]
          Length = 381

 Score = 45.0 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWD 185


>gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160]
          Length = 1462

 Score = 45.0 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|323495020|ref|ZP_08100109.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
 gi|323310677|gb|EGA63852.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
          Length = 346

 Score = 45.0 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 8/158 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS---YLKKFFENEHFLKIGHNIKYDKL 474
           D    +  T +  L +    D    + +   ++          ++   LK+ H    D  
Sbjct: 3   DTEFVRTRTYYPQLGLIQLYDGQTLSLIDPTVIDDMTAFVHLLQDTSVLKVLHACGEDLE 62

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G       D  LM+  L     S   A++  ++L+    E+ KS   +  + + 
Sbjct: 63  VFQNSFGCLPYPMVDTQLMAAFL-GHGLSTGFAALVNEYLNV---ELDKSESRTDWLARP 118

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
              +  E+A  +   +L L+  L   +         ++
Sbjct: 119 LTDKQLEYAAADVYYLLPLYEQLFENITQAGWWQAAQQ 156


>gi|262167934|ref|ZP_06035634.1| ribonuclease D [Vibrio cholerae RC27]
 gi|262023661|gb|EEY42362.1| ribonuclease D [Vibrio cholerae RC27]
          Length = 348

 Score = 45.0 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 3   DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 62

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 63  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 118

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 119 LSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWD 152


>gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 233

 Score = 45.0 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 66/209 (31%), Gaps = 39/209 (18%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---------LSVHT-SQDSTG 441
           F   T  ++    + I I    L  K  T                   L+VH  S +   
Sbjct: 6   FDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHAEALAVHGISNEQLL 65

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSY 494
                 EIL    +FF+      + HN  +D       L R G   I +    D + ++ 
Sbjct: 66  DKPTFAEILDEFLEFFDGAKL--VAHNAMFDLGFINAELARLGQAEIQVERVVDTLALAR 123

Query: 495 VLDSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPIDKISDS 536
                   + + ++ +++                  L+    E++  +++++ +     +
Sbjct: 124 RKHP-MGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELIGGKQTALGLSIGGTA 182

Query: 537 QVQEHAIENSNVILQLWLL-LRPKLIVEK 564
                    + +IL      L P++  E+
Sbjct: 183 SGSNAGDSGAAIILAARPRPLAPRISDEE 211


>gi|229521896|ref|ZP_04411313.1| ribonuclease D [Vibrio cholerae TM 11079-80]
 gi|229340821|gb|EEO05826.1| ribonuclease D [Vibrio cholerae TM 11079-80]
          Length = 381

 Score = 45.0 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWD 185


>gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 706

 Score = 45.0 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 40/219 (18%)

Query: 384 LETIGSASFKIITDTMDAFHS-KPIAI-AISTLDQKDDTSFKVETIFID--------LSV 433
           LE +    F   T  ++     + I I A+  L+ K     + + +           +  
Sbjct: 511 LERLSYTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPY 570

Query: 434 HTSQDSTGK-NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM-RGFE 487
           H       +      E+L     +  +   + +GHN+ +D   L       G+   +   
Sbjct: 571 HGIHPEMVQGQPRIAEVLPAFHAYASD--TVLVGHNVAFDMRFLQLKEAATGLRFDQPVL 628

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-AIENS 546
           D +L++ +      SH + +IA +                     +     Q H A+ ++
Sbjct: 629 DTLLLASIAQPHEPSHSLEAIAAR---------------------LGVEITQRHNALSDA 667

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
            V  +++L L P L    ++ + +  +       +++  
Sbjct: 668 LVTAEVFLRLLPLLKARGVVTLGQAREAAEHSYYARLRY 706


>gi|121729927|ref|ZP_01682350.1| ribonuclease D [Vibrio cholerae V52]
 gi|121628334|gb|EAX60840.1| ribonuclease D [Vibrio cholerae V52]
          Length = 350

 Score = 45.0 bits (105), Expect = 0.064,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 28  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 87

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 88  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 143

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 144 LSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWD 177


>gi|320194484|gb|EFW69115.1| Ribonuclease D [Escherichia coli WV_060327]
          Length = 375

 Score = 45.0 bits (105), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQLITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|163759179|ref|ZP_02166265.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
 gi|162283583|gb|EDQ33868.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
          Length = 383

 Score = 45.0 bits (105), Expect = 0.064,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 32/198 (16%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T+ +  +  +L      +          +  +   I ++                  
Sbjct: 4   ITTTEALAAFCARLAAHEFVTVDTEFLRETTYWPELCLIQMA------------------ 45

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFE---NEHFLKIGHNIKYDKLVL-HRYGISMRGF 486
                  D  G      E +  LK FFE   +   +K+ H  + D  ++ HR  +     
Sbjct: 46  -----GPDDEGIVDPLAEGID-LKPFFELMADTSVVKVFHAARQDIEIMVHRGDLVPHPI 99

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  + + V   G S      +  +       +   SR +      +SD Q+ ++A+ + 
Sbjct: 100 FDTQVAAMVCGFGESI-SYDQLVSRITGAHIDKS--SRFTDWSRRPLSDKQL-DYALADV 155

Query: 547 NVILQLWLLLRPKLIVEK 564
             +  ++L L  +L  E 
Sbjct: 156 THLRDVYLELLSRLKAEG 173


>gi|195454489|ref|XP_002074261.1| GK18419 [Drosophila willistoni]
 gi|194170346|gb|EDW85247.1| GK18419 [Drosophila willistoni]
          Length = 1247

 Score = 45.0 bits (105), Expect = 0.065,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 41/214 (19%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A         G     I+ D D+      T      
Sbjct: 874  CQELLRLFGIPYIVAP-MEAEAQCAFLNATELTNGT----ITDDSDIWLFGGRTVYKNFF 928

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 929  AQNKHVLEFRSEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFST- 985

Query: 215  ENILINASRIKQKKRRENILEYAE--------------TARLS--RKL------------ 246
               + +   I  +   E +  + +              +ARLS  +KL            
Sbjct: 986  ATTVPSTQSICNQTVLETLTRFRDWWQAHKNSNLPPGSSARLSLRKKLKNIDLHEGFPSS 1045

Query: 247  --VMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
              V    D  +    +       +   +  F + 
Sbjct: 1046 AVVEAYLDPKVDDNRDAFTWGTPDVDSIREFARK 1079


>gi|169622866|ref|XP_001804841.1| hypothetical protein SNOG_14657 [Phaeosphaeria nodorum SN15]
 gi|111056729|gb|EAT77849.1| hypothetical protein SNOG_14657 [Phaeosphaeria nodorum SN15]
          Length = 279

 Score = 45.0 bits (105), Expect = 0.065,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 79/261 (30%), Gaps = 36/261 (13%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +N  S   I  T  +   V  L+T  + S    +  +     + + ++ S          
Sbjct: 1   MNQPSPEIIDTTLQVSALVDWLQTHHNPSNP--SSPIIYLDLEGVPLSRSGSISILTIFL 58

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGI 481
                   + +HT          ++     LK   E+    K+  +++ D   L   YG+
Sbjct: 59  PSSARIFLIDMHTLGALAFTTPSSQG--KTLKHVLEDSQITKVFFDVRNDSDALYAHYGV 116

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
           +++  ED+ LM                          E     K+++    I  ++  E 
Sbjct: 117 ALQCVEDVQLM--------------------------ESAAREKTALRRTVIGLARCVEK 150

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
               +    Q       KL   +L   YE  ++  I         G   D   L Q+   
Sbjct: 151 NCS-ATSTWQAAKSRGEKLFKPELGGSYEVFNQRPIPADIVAYCAG---DVGCLVQLREV 206

Query: 602 ISK-NLLSLEENIYDLSGEKF 621
             +       + + D +G + 
Sbjct: 207 FCQGKGQEWRDLVRDEAGRRV 227


>gi|255579460|ref|XP_002530573.1| hypothetical protein RCOM_0547690 [Ricinus communis]
 gi|223529872|gb|EEF31803.1| hypothetical protein RCOM_0547690 [Ricinus communis]
          Length = 180

 Score = 45.0 bits (105), Expect = 0.066,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 16/70 (22%)

Query: 3   KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNA---------IAGFCNMLWKLLQNSR 53
               L L+DG+S IYRA+Y    L++ H G    A         I    +++  +L    
Sbjct: 118 SNGRLMLIDGTSIIYRAYYKL--LAKLHHGHLSQADGNGDWVLTIFSALSLIIDVL---- 171

Query: 54  KESIASHFAV 63
            E I SH  V
Sbjct: 172 -EFIPSHVVV 180


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score = 45.0 bits (105), Expect = 0.066,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 35/202 (17%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLS 432
           Q LE      F + T  +    ++ I                        K+ +   DL+
Sbjct: 397 QDLEHARYVVFDLETTGLSPKFNELIEFGAVVWQNGQILEKHEFLIKPKEKIPSYISDLT 456

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM------RGF 486
             T+Q    +    +E    +K+ F+N   + + HN ++D   L  +   +      +  
Sbjct: 457 GITNQMIENEAISVEEAAIKIKQIFQN--SILVAHNARFDYGCLVEFFKELELYELEQPV 514

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D + +S  L   +  H++  +A+    +                   D         ++
Sbjct: 515 IDTLEVSRFLAPTQKRHNLKELAKNASIHY------------------DETESHRGGYDA 556

Query: 547 NVILQLWLLLRPKLIVEKLLHV 568
            V+ ++W     KLI + +  +
Sbjct: 557 EVLAKVWDQFLIKLIEKNIKDL 578


>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           bovis PG45]
          Length = 1458

 Score = 45.0 bits (105), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
            +     SF I T  +     + I    +    +D    K    FI         +T   
Sbjct: 419 FKDYSYVSFDIETTGLSPKFHEIIEFG-AVDINQDLKVGKTTQFFIKPKDKIGSFTTELT 477

Query: 444 TLTKEILS----YLKKFFEN-----EHFLKIGHNIKYDKLVLHRYGISMRGFE------- 487
            +T+++L     Y+K+  E      +  + I HN K+D   L      +   +       
Sbjct: 478 GITQQMLDSKGLYIKEGLEKIYDCLDGKIAIAHNAKFDFNFLKEQ-FRLNNMQFPRVTVI 536

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK 511
           D ++ S +   G   H +  +A +
Sbjct: 537 DTLVASRIGFPGYKRHKLEDVASR 560


>gi|159905743|ref|YP_001549405.1| flap endonuclease-1 [Methanococcus maripaludis C6]
 gi|159887236|gb|ABX02173.1| XPG I domain protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 45.0 bits (105), Expect = 0.067,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  GIP I+    E +   A           A  +IS D D +   +       T 
Sbjct: 136 KKLLELMGIPYIDAPS-EGEAQCAELVK----ANDAFCVISQDYDSILYGAENVVKNITS 190

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAA 205
                E I++E  + +  +  ++++ +  L G   D  P G+ G G K A 
Sbjct: 191 SNKDIELIELEKTLSELNVSLDQLIDVAILIG--TDYNPGGLKGFGPKKAI 239


>gi|297579488|ref|ZP_06941416.1| ribonuclease D [Vibrio cholerae RC385]
 gi|297537082|gb|EFH75915.1| ribonuclease D [Vibrio cholerae RC385]
          Length = 381

 Score = 45.0 bits (105), Expect = 0.067,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWD 185


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score = 45.0 bits (105), Expect = 0.068,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 35/202 (17%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLS 432
           Q LE      F + T  +    ++ I                        K+ +   DL+
Sbjct: 397 QDLEHARYVVFDLETTGLSPKFNELIEFGAVVWQNGQTLEKHEFLIKPKEKIPSYISDLT 456

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM------RGF 486
             T+Q    +    +E    +K+ F+N   + + HN ++D   L  +   +      +  
Sbjct: 457 GITNQMIENEAISVEEAAIKIKQIFQN--SILVAHNARFDYGCLVEFFKELELYELEQPV 514

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D + +S  L   +  H++  +A+    +                   D         ++
Sbjct: 515 IDTLEVSRFLAPTQKRHNLKELAKNASIHY------------------DETESHRGGYDA 556

Query: 547 NVILQLWLLLRPKLIVEKLLHV 568
            V+ ++W     KLI + +  +
Sbjct: 557 EVLAKVWDQFLIKLIEKNIKDL 578


>gi|196004776|ref|XP_002112255.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
 gi|190586154|gb|EDV26222.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
          Length = 247

 Score = 45.0 bits (105), Expect = 0.070,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 10/119 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +     FGIP I     EA+   A   +  + +G     I+ D D+          Y  
Sbjct: 127 CQELLSLFGIPYIVSP-MEAEAQCAVLDFTNQTDGT----ITDDSDIFLFGGRNIYRYVF 181

Query: 158 VKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
            +    E  D + + +  G+  +KM+ L  L G   D   GI  +G   A  LL  +G+
Sbjct: 182 RESKLAEFYDSQRIQRLMGLDRKKMITLAYLLG--SDYTDGIKNVGIVMAMELLSTFGD 238


>gi|124800774|ref|XP_001349559.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7]
 gi|3845126|gb|AAC71832.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7]
          Length = 416

 Score = 45.0 bits (105), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 53/142 (37%), Gaps = 13/142 (9%)

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI- 411
           E++ K         +   I + K  ++ V +++           + +  F+ K I + I 
Sbjct: 30  EKIHKYFDNIDKKRNIKYISDCKSCKECVDEIKNGNY-------NLLKDFNMKMIGLDIE 82

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                K      ++  + D+ +        K       ++Y+K   E +  +K+ H+ + 
Sbjct: 83  GYKIGKYGIVSIIQICYEDIYIFD----IYKCDNVYLFINYIKDILECDDIIKVTHDCRE 138

Query: 472 DKLVLHR-YGISMRGFEDIMLM 492
           D  +L+  Y I ++   D  + 
Sbjct: 139 DCSILYNQYNIHLKNILDTQVA 160


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
           33386]
          Length = 1421

 Score = 45.0 bits (105), Expect = 0.070,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 87/236 (36%), Gaps = 33/236 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDS 439
             +E      F I T   D +  K I I    L  ++  D         + +     + +
Sbjct: 392 AMIEQEEYIIFDIETTGFDPYKDKIIEIGAVKLKGRNIIDRFSAFVNPEVPIPEEIIKLT 451

Query: 440 TGKNTLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGIS-MRGFEDIM 490
              + + K+   I + L +F E       + HN K+D   L     +  +  +    D +
Sbjct: 452 NITDDMVKDAELIDTVLPRFLEFCGDCTMVAHNAKFDVGFLTQKARQLELEFLPSVIDTL 511

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
             + VL +     ++ ++A  +              +I +D          A++++    
Sbjct: 512 YWARVLITDLKRFNLKALANYF--------------NISLDN------HHRAVDDAEATA 551

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDV-VSQMEITGIQI-DQDLLKQVSAEISK 604
            +++ +   ++ + +L +YE  D    +V  +    T I + +++ LK +   IS+
Sbjct: 552 SIFIKMLNMVLSKGILQIYEINDTFQNNVQTADTMNTMILVKNREGLKDLYELISR 607


>gi|154275864|ref|XP_001538777.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413850|gb|EDN09215.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 808

 Score = 45.0 bits (105), Expect = 0.070,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
           S QTS   ++ +P K +   L K          Y   + T +    +    +       +
Sbjct: 547 STQTSNGQADPSPSKYWSYNLNKTPDGKEITVHYCTSLQTMERVAKL--FLSETIVGLDV 604

Query: 395 ITDTMDAFHSKPIA-IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
                 +     +  +++  L  K+  +     +F              N+L   +   L
Sbjct: 605 EWKAQASAQDSLVDNVSVIQLASKERIAIFHLALFNP-----------ANSLQHLLSPTL 653

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI----MLMSYVLDS---GRSSHDI 505
           K+  E+   +K+G  I+ D   L++Y GI      ++     ++ + L+     +   ++
Sbjct: 654 KRILESPDIVKVGVAIRADCTRLYKYLGIRTDNICEVSRLHKVVKHHLNPKLIDKRLVNL 713

Query: 506 ASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           A   ++ L     +            +   ++      ++   +    LQL+ +L  K
Sbjct: 714 AQQVEEHLGLPLDKDPEIRCGGWSKKLNYRQV------QYVATDPYAALQLFHVLEAK 765


>gi|144900310|emb|CAM77174.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 459

 Score = 45.0 bits (105), Expect = 0.070,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 44/204 (21%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           L  +        T  +DA     +++  +                +DL V+  +    + 
Sbjct: 252 LSQLPVVVLDTETTGLDAARDAIVSVG-AVRCHGSRIY---RAAMLDLLVNPGRRIPARA 307

Query: 444 TLT-----------KEILSYLKKFFE-NEHFLKIGHNIKYDKLVLHRYGISMRGFE---- 487
           T              ++ + L +     +  + +GH I +D L L R+G    G +    
Sbjct: 308 TAIHGIDESMVAGKPDLAASLPEIAAIMDKAVVVGHQIGFD-LALLRHGTERLGLDWTPP 366

Query: 488 ---DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              DI+L+S  L    S H+I   A +                + I        +  A+ 
Sbjct: 367 PRLDILLLSAALAPDESGHEIDDQAARM--------------GVNISG------RHTALG 406

Query: 545 NSNVILQLWLLLRPKLIVEKLLHV 568
           ++ V  +LW+ L P+L    +L +
Sbjct: 407 DALVTAELWVRLIPQLERAGVLTL 430


>gi|153823321|ref|ZP_01975988.1| ribonuclease D [Vibrio cholerae B33]
 gi|126519155|gb|EAZ76378.1| ribonuclease D [Vibrio cholerae B33]
          Length = 246

 Score = 45.0 bits (105), Expect = 0.070,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 28  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 87

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 88  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 143

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 144 LSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWD 177


>gi|328780055|ref|XP_623215.2| PREDICTED: hypothetical protein LOC550822 isoform 1 [Apis
           mellifera]
          Length = 664

 Score = 45.0 bits (105), Expect = 0.071,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 118/324 (36%), Gaps = 31/324 (9%)

Query: 324 TTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQK 383
             I+ S F S+   ++   S Q            +     N +    +   +    W  K
Sbjct: 158 NNIQNSHFPSIESNSTSPISLQQQTLKQRINTLVMKTLADNTEKDRSLQTMQMGDAWKLK 217

Query: 384 LETIGSA------SFKIITDTMDAFHSKPIA-IAISTLDQKDDTSFKVETIFIDLSVHTS 436
           +            S +II D ++         I +S   +  +   K +   + +   + 
Sbjct: 218 VLQQTRVIVNPRESLQIIEDIINPRKPPSDGKIVVSFDCEGINLGVKGQLTLVQIGTMSG 277

Query: 437 QDSTGKNTLTKEILSY--LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMS 493
           Q           ++    L+K  E++  +K+ H+ + D + L+R + I +    D     
Sbjct: 278 QAYVFDLFACPNLVQAGGLQKLLEHKDVIKVIHDCRNDSVNLYRQFKIMLNNVFDTQAAH 337

Query: 494 YVL---DSGRSSH-----DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQ 539
            VL   ++G+  +     ++ ++   +      L    K I ++ +       ++   + 
Sbjct: 338 AVLQFQETGKPVYKVKNVNLNTLCDHYGAPSNPLKEQLKNIYRNNQRYWCRRPLTRDMLI 397

Query: 540 EHAIENSNVILQLW----LLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
             + +  +++ Q++     L++P++ V   +L     +L     +V ++ +   ++ +  
Sbjct: 398 YASSDVLSLVPQIYISMSRLIKPEVQVLFNELCEEQIQLHIKPAEVKARKKQRKVETEVA 457

Query: 594 LL-KQVSAEISKNLLSLEENIYDL 616
            L K++    +KN++     I  L
Sbjct: 458 DLKKRMEEATTKNIVLSNREIRLL 481


>gi|239992935|ref|ZP_04713459.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
          Length = 385

 Score = 45.0 bits (105), Expect = 0.071,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 57/208 (27%), Gaps = 28/208 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I  ++ +++     +   + +                 I +               
Sbjct: 2   QYQLITTSEQLEKVCTAAQRQEAVALDTEFVRTKTLTPHLGLIQL--------------- 46

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-LHRYGISMRG 485
                  +        + L  + +       EN   +K+ H+   D    L  +      
Sbjct: 47  -------YDGHQLVLIDPLAIDNMQPFIDLMENTEVVKVLHSCSEDIEAFLTAFDTVPTP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  L   +LD G  S   A + +         + K    +  + +        +A  +
Sbjct: 100 VFDTQLAGSILDMG-PSLGYAKLVEL---LCDISLDKGESRTDWLARPLREAQLSYAAND 155

Query: 546 SNVILQLWLLLRPKLIVEKLLH-VYERL 572
              +L  +  L  K+     +H +Y+ +
Sbjct: 156 VLYLLPCYQQLASKVQEAGKVHWIYQEI 183


>gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC
           35311]
 gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC
           35311]
          Length = 1450

 Score = 45.0 bits (105), Expect = 0.072,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 121/362 (33%), Gaps = 56/362 (15%)

Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN---ILINASRIK 225
            ++  +  E  +  + +          I  I   T++ +++++ N E    I        
Sbjct: 237 EEERRVTIEGFIFNKEIRELRSKRKILILKITDYTSSFVVKKFSNSEKDEQIFDAIQNNS 296

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285
             + R +I E        R LVM   D+ I +  E          + +     L     +
Sbjct: 297 WIRVRGSIQEDTFM----RDLVMNAQDL-IEVTHESRKDYAPENEKRV----ELHLHSNM 347

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
           + +  T      +I  +V+      +K IA    I   +  +    +  + Q + +    
Sbjct: 348 STMDAT-----NSISDLVVQAGKWGHKAIA----ITDHSCAQAFPEAHAAGQKANV---- 394

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
                   ++    +  I +D      N   ++     L       F + T  + A +  
Sbjct: 395 --------KILYGVEANIIDDGVPIAYNEAHVE-----LLDATYVVFDVETTGLSAVYDT 441

Query: 406 PIAIAISTLDQKD---DTSFKVETIFIDLSVHTSQDSTGKNTLTKE------ILSYLKKF 456
            I ++ +    K    DT  +       LS  T   +   N +  +      +L+  KKF
Sbjct: 442 IIELS-AVKMHKGNVIDTFEQFINPGHPLSQTTIHLTGITNEMVSDAKSEKVVLNMFKKF 500

Query: 457 FENEHFLKIGHNIKYDKLVL----HRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQ 510
             +E+ + + HN  +D   L     +Y I        D + ++  L     SH +  +A+
Sbjct: 501 --SENTILVAHNAAFDMGFLNTSYRKYKIPEAENPVIDTLELARYLYPTLKSHRLNVLAK 558

Query: 511 KW 512
           K+
Sbjct: 559 KF 560


>gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseovarius sp. HTCC2601]
          Length = 401

 Score = 45.0 bits (105), Expect = 0.072,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 78/267 (29%), Gaps = 25/267 (9%)

Query: 245 KLVMLRTDVPITIPLEHLILEDCNGP-RLISFLKALEFTKLINRVATTYDCDAANIEPVV 303
           +L  L T++P+ + L +   +      +    L  L   +L   +   ++    N     
Sbjct: 141 RLTALLTEIPVAMILVNPRGQIVLYDGQAAEVLAQLHVPRLNAPLTDFFEAKGLNAAVKQ 200

Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363
           L     E   +A   +  +  + +             I+  QT      ER        +
Sbjct: 201 LHKTGHEVSFVAEGVDGAQSYSARLKPMEG-GGYMMVIDGAQTHMAPEAERPLVYDFDLL 259

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI-------STLDQ 416
            +D+   +  T         L  +    F   T  +     + + I             +
Sbjct: 260 THDAPEAVEETP--------LAALSYTVFDTETTGLLPHKDEVVQIGAVRVLNGRIVPGE 311

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF--FENEHFLKIGHNIKYDKL 474
             D            S    Q S        +I    ++F  F     + + HN  +D  
Sbjct: 312 VMDQLVDPGIPIPPSSTKVHQVSDAMVRGQPDIAEAGRRFHRFAKGSVI-VAHNAPFDMA 370

Query: 475 VLHRY----GISM-RGFEDIMLMSYVL 496
            L R+    G+       D +L+S VL
Sbjct: 371 FLRRHRNRMGVEWDHPILDTVLLSAVL 397


>gi|40063706|gb|AAR38487.1| ribonuclease D, putative [uncultured marine bacterium 583]
          Length = 341

 Score = 45.0 bits (105), Expect = 0.072,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 82/251 (32%), Gaps = 42/251 (16%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T  ++++++ + +    +       ++ ++ +   + I+T    +            
Sbjct: 2   IQTTSQLERYLKTINSDSRLAIDTEFKRINTYYPQLCLVQIATTHSLECI---------- 51

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDI 489
                       + L+   L  L +         I H+ + D    +     +     D 
Sbjct: 52  ------------DVLSINDLEPLFEKLYRSKTEWIVHSARQDIEAFYHLSKRIPVSLFDT 99

Query: 490 MLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS------DSQVQEHA 542
            + + +L+   + S+ +             E+L+  +      +         + V E+A
Sbjct: 100 QIAASLLNYPLQISYQL-----------ITEVLQDIQLDKSFTRFDWTTRPLPADVVEYA 148

Query: 543 IENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601
           +++   +L  +  L+ +L I +K+  + E     +   + +  I  I      L Q+  +
Sbjct: 149 LDDVRYLLPNFEKLKHELTISKKIQWLDEETRFLLDQDLYEPSIEKICYKTKGLSQLGKK 208

Query: 602 ISKNLLSLEEN 612
                + L   
Sbjct: 209 FQDKAIKLAAW 219


>gi|330859586|emb|CBX69926.1| unknown protein [Yersinia enterocolitica W22703]
          Length = 42

 Score = 44.6 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 24/39 (61%)

Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
            +K R+ + ++ E A + +++  L+ D+P++  L+ L L
Sbjct: 2   PEKWRKKLQQHQEMAFICKQIATLKADLPLSGNLQQLRL 40


>gi|195108841|ref|XP_001999001.1| GI24274 [Drosophila mojavensis]
 gi|193915595|gb|EDW14462.1| GI24274 [Drosophila mojavensis]
          Length = 901

 Score = 44.6 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 77/221 (34%), Gaps = 27/221 (12%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P    L++ + +   P        + +   +QQ + +L      +  +   +   F   
Sbjct: 255 EPPSEQLQKQKPVLPAPPAQTELMLVDSVDALQQALTELRKASQIAIDVEHHSYRTF--- 311

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + I+ L Q                   ++D        +E +  L     +   LKI
Sbjct: 312 ---MGITCLVQMST---------------RTKDYIFDTLKLREEMHILNLVLTDPKVLKI 353

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D   L R   + +    D    +  L+  R S  +A + + +L     ++ KS 
Sbjct: 354 LHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNMARLS--LAFLLKHYLDL---DVDKSL 408

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           + +    +    ++ ++A ++++ ++ ++  L   L+  + 
Sbjct: 409 QLADWRMRPLPQKLIDYARQDTHYLIYIYERLTNDLLQSEQ 449


>gi|195030390|ref|XP_001988051.1| GH10954 [Drosophila grimshawi]
 gi|193904051|gb|EDW02918.1| GH10954 [Drosophila grimshawi]
          Length = 1183

 Score = 44.6 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 101/328 (30%), Gaps = 61/328 (18%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A    +    G     I+ D D+      T      
Sbjct: 795  CQELLRLFGIPYIVAP-MEAEAQCAFLNAVEITNGT----ITDDSDIWLFGGRTVYKNFF 849

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN- 213
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 850  AQNKHVLEFRAEQIEQTFNCNRSKLIQLACLVG--SDYTTGIHGIGAVTALEILASFTTS 907

Query: 214  -LENILINASRIKQKKRREN------ILEYAET--------------ARLS--RKL---- 246
             L++   +           N      ++++ +               AR+S  +KL    
Sbjct: 908  KLDSATTSLDTASNGSAITNQSVLSTLVKFRDWWQSQHNANIPVGSTARISLRKKLKNIN 967

Query: 247  ----------VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296
                      V       +    +       +   +  F +             T     
Sbjct: 968  LHEGFPSSSVVEAYLTPKVDETRDAFSWGSPDVESIREFARKF--------FGWTTSKTD 1019

Query: 297  ANIEPVVLDINTTENKG-----IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
              + PV+  IN  + +G        ++ +     + + +  +  D+ S     +TP+K  
Sbjct: 1020 DILMPVMKKINEKKIQGSIRNYFTAKSALRVQQPMVSKRVQTAIDKMSGKIDAETPEKPK 1079

Query: 352  LERLQKLSQYPINNDSYTKIVNTKDIQQ 379
                +  +   +   +    ++ +D  +
Sbjct: 1080 RATRRARNAAALTTKAQEAPLDEEDGDK 1107


>gi|224133192|ref|XP_002321506.1| predicted protein [Populus trichocarpa]
 gi|222868502|gb|EEF05633.1| predicted protein [Populus trichocarpa]
          Length = 457

 Score = 44.6 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 68/204 (33%), Gaps = 39/204 (19%)

Query: 62  AVIFDYP----AVTFRNEIYPDYKANRPKIPEMLLP----------QLPL---------V 98
            V+FD            + Y   KANR    E L            Q  +         +
Sbjct: 77  VVVFDGGNIPCKAGTEQDRYRKRKANRELAMEKLKEGNANAATEFFQRAISITPLMAHQL 136

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
               ++  I  +    +EAD  +A    +  + G    +I+ D DL+      T      
Sbjct: 137 IQILRSENIEFLVAP-YEADAQLAHLASLEAERGGIAAVITEDSDLLAYGCQAT----IF 191

Query: 159 KEEKID--IEHVIKKWGIPPEKMVCLQAL-----TGDSI----DNIPGIPGIGYKTAALL 207
           K ++     E V+ K      +    Q        G  +    D +P +PGIG   A   
Sbjct: 192 KMDRYGNGEEIVLDKVFDAAARKPSFQCFDKELFMGMCVLAGCDFLPSVPGIGISKAHSY 251

Query: 208 LQEYGNLENILINASRIKQKKRRE 231
           + +Y NL+ +L      K ++  E
Sbjct: 252 VSKYRNLDRVLSVLKLEKGRQMPE 275


>gi|195119318|ref|XP_002004178.1| GI19770 [Drosophila mojavensis]
 gi|193909246|gb|EDW08113.1| GI19770 [Drosophila mojavensis]
          Length = 991

 Score = 44.6 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 113/280 (40%), Gaps = 38/280 (13%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY--LKKFFENEHFLKIG 466
           IAIS   +  +   K E   I++     +           ++S   LK   E++  +K+ 
Sbjct: 538 IAISLDCEGINLGIKGEITLIEIGTARGEAFLFDVQSCPAMVSDGGLKTLLEHDQVIKVI 597

Query: 467 HNIKYDKLVLH-RYGISMRGFEDIMLMSYVL---DSGRSSH-----DIASIAQKW----- 512
           H+ + D + L+ ++GI +R   D      +L   ++G+  +      + S+ +++     
Sbjct: 598 HDCRNDAVNLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLCEQYNAPCN 657

Query: 513 -LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL--QLWLLLRPKLIVEKLLHVY 569
            +    K+I +  +       ++   +  +A  +  V++  QL+  L  ++  E    ++
Sbjct: 658 PIKDQLKQIYRRDQKFWAKRPLTREMML-YAAGDVLVLIHEQLFGTLAQQIKPEN-RQLF 715

Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEENIYDLSGEKFNLSSP 626
              +     ++ Q++   ++I +   ++VS E   + + L    ++I         + S 
Sbjct: 716 S--ELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLAQTSKSI---------VLSN 763

Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           +++   L   +      K +   +   A+ LE++    NP
Sbjct: 764 REI--RLLRYMDLTEEEKERLKGYYKVAKKLEKMESAGNP 801


>gi|327484520|gb|AEA78927.1| Ribonuclease D [Vibrio cholerae LMA3894-4]
          Length = 348

 Score = 44.6 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +L  +  F    ++   LK+ H    D  
Sbjct: 3   DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQDTSVLKVLHACGEDLE 62

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 63  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 118

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 119 LSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWD 152


>gi|257063921|ref|YP_003143593.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
 gi|256791574|gb|ACV22244.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
          Length = 392

 Score = 44.6 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I     +  +V+        +          +  K   I ++T ++              
Sbjct: 2   ITEQTQLDAFVEHARAHKVLAIDTEFMREKTYWPKLCLIQLATPERAVAV--------DP 53

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDI 489
           L +H               LS L   F++E+ LK+ H  + D  +++   G       D 
Sbjct: 54  LRLHD--------------LSALNVLFQDENILKLFHASRQDLEIINIEMGCLPAPIFDT 99

Query: 490 MLMSYVL-DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSN 547
            + + +L  + +  +    +    L       LK   S     +   ++ Q ++A+++  
Sbjct: 100 QIAAALLGHTTQIGYG--PLVMNELGVH----LKKADSYTDWSRRPLTKSQLQYALDDVI 153

Query: 548 VILQLWLLLRPKLIV 562
            + +L+  +  KL  
Sbjct: 154 YLPKLYDSMSRKLKK 168


>gi|156039491|ref|XP_001586853.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980]
 gi|154697619|gb|EDN97357.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 808

 Score = 44.6 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 79/215 (36%), Gaps = 30/215 (13%)

Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410
             E+ + ++  P+ + S T +   + + + +++L+     +  +                
Sbjct: 206 MFEKAEPINYLPVESTSATFVDTYEGVLEMLEELKGAKEIAVDLE--------------- 250

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                  D  S+      + +S              ++ L  L + F +   +K+ H   
Sbjct: 251 -----HHDTRSYVGLVSLMQISTREKDWIVDTLKPWRQQLQVLNEVFADPCIIKVFHGAY 305

Query: 471 YDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
            D + L R  G+ + G  D       L  G +   +A + +K++     +    +K  + 
Sbjct: 306 MDIVWLQRDLGLYVVGLFDTHYACRRL--GLAGGSLAFLLKKYI-----DFDADKKYQLA 358

Query: 530 IDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +I     ++  +A  +++ +L ++  LR +LI 
Sbjct: 359 DWRIRPLPEEMFFYARADTHFLLYIFDNLRNELID 393


>gi|50237510|gb|AAT71843.1| DNA repair protein RAD2 [Rock bream iridovirus]
          Length = 298

 Score = 44.6 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 21/149 (14%)

Query: 79  DYKANRPKI-----PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
           DY  +R +      PE        +R     FG+P       E +     +       G 
Sbjct: 138 DYVEHRVRTHQAVTPED----YDRMRAILTGFGVPY-TFARTEGE----MHCVQMVANGQ 188

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           A  +++ D D + + +  +  Y           ++ +  V++   + P + +    L G 
Sbjct: 189 ADLVMTIDTDAILVSALHSVPYVLTNFKAGCFRQVSVHEVLENCHMTPAQFLDFCILLG- 247

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENI 217
             D    I GIG+  A  L++ +G+++N+
Sbjct: 248 -TDFNKHIRGIGHVKAQNLIKTHGSIDNM 275


>gi|297182779|gb|ADI18933.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0010_09O16]
          Length = 203

 Score = 44.6 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L K   +++  K+ H  + D   + +     +   E   + S +  +   SH + ++ ++
Sbjct: 65  LVKILADKNIKKLFHYARSDLTHIKYYLKTDVNNIECSKIKSKLARTFSDSHSLKTLIKE 124

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           + +    ++ K  ++S    ++S  Q+ ++   +   + ++   L   L  EK + +Y  
Sbjct: 125 FANV---DVSKQFQTSDFGGELSQGQL-KYCANDVIYLHKIHSELDKILEREKRMDLYRE 180

Query: 572 L 572
            
Sbjct: 181 C 181


>gi|170680016|ref|YP_001743442.1| ribonuclease D [Escherichia coli SMS-3-5]
 gi|218699628|ref|YP_002407257.1| ribonuclease D [Escherichia coli IAI39]
 gi|170517734|gb|ACB15912.1| ribonuclease D [Escherichia coli SMS-3-5]
 gi|218369614|emb|CAR17383.1| ribonuclease D [Escherichia coli IAI39]
          Length = 375

 Score = 44.6 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 62/221 (28%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +           
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH--------LA 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G   + 
Sbjct: 54  LIDPLGISDW--------------SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|154151645|ref|YP_001405263.1| flap endonuclease-1 [Candidatus Methanoregula boonei 6A8]
 gi|166973700|sp|A7IA59|FEN_METB6 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|154000197|gb|ABS56620.1| XPG I [Methanoregula boonei 6A8]
          Length = 333

 Score = 44.6 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 84/247 (34%), Gaps = 61/247 (24%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKESIASHF 61
           VD ++ +Y+       + R+ DG P         + ++G   +L++++    K       
Sbjct: 27  VDANNTLYQ----FLTIIRQPDGTPLMDAKGRVTSHLSG---ILFRMVNFLEKGIKP--- 76

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP--------------------LV--- 98
             +FD      + E   + K  R +  E     +                     ++   
Sbjct: 77  VFVFDGKPPELKQETNAERKKLRDEAGEKYKEAVERGDEEEAYRQARSATRVDETIIATS 136

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +      GIP ++    E +           + G A   +S D D +   +P      TV
Sbjct: 137 KELLDLLGIPYVQAPS-EGE----AQAAFMVQRGDARFAVSQDYDTLLFGAPLLMRNLTV 191

Query: 159 KE-------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
                          E++ +  V+    +  E++V +  L G   D  PG  G+G KTA 
Sbjct: 192 SGKRKIRGRAVTVNPERLVLSEVLSGLSLTREQLVEVGILVG--TDFNPGAAGVGAKTAL 249

Query: 206 LLLQEYG 212
            +++  G
Sbjct: 250 KIVKSGG 256


>gi|154336623|ref|XP_001564547.1| exosome subunit rrp6p homologue [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061582|emb|CAM38612.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 735

 Score = 44.6 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 79/218 (36%), Gaps = 28/218 (12%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           +++   P++    + +     +Q  V KL      +  +                     
Sbjct: 221 EEVPPMPLDTCPLSFVDTPAAMQAMVAKLLLSSEIAVDLE-------------------- 260

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
             D  S++  T  + +S    +D        + ++  L   F N   LK+ H  + D   
Sbjct: 261 HHDFYSYQGITCLMQIST-REEDFIVDCLQLRSLMGTLAPVFLNPLILKVLHGAREDIRW 319

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L + + + +  F D  +    L      H   S+A     + + ++ K  +++    +  
Sbjct: 320 LQKDFSLYLVNFFDTGVALQTL------HMPYSLAFAVDHFCQVKLNKKFQTADWRVRPL 373

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            +++  +A ++++ +L ++  L+  L+  +   +   L
Sbjct: 374 SAEMVHYARQDTHFLLYVYDRLKALLLNSEGRAIVGNL 411


>gi|322799595|gb|EFZ20873.1| hypothetical protein SINV_12011 [Solenopsis invicta]
          Length = 813

 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 76/226 (33%), Gaps = 32/226 (14%)

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
           +++  Q P+    +R+       +++  +  I    DIQ  ++ L      +  +   + 
Sbjct: 235 ELDKFQVPECQLKKRVCVR-YKSLDDTRFVFIDKPTDIQTLLEDLRNHKEIAVDLEHHSY 293

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
             F      + IST+                       D        +  L  L + F  
Sbjct: 294 RTFQGITCLMQISTITT---------------------DYLIDTLTLRSELHRLNEIFTK 332

Query: 460 EHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
              LK+ H    D L L R   + +    D    +  L+       +  ++   L     
Sbjct: 333 PSILKVFHGADMDILWLQRDLSLYVVNMFDTHQAARQLN-------LPYLSLAHLIKKYC 385

Query: 519 EILKSRKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
           +I  +++  +   +I     ++  +A E++  +L +  +L  +LI 
Sbjct: 386 DIDLNKQFQLADWRIRPLPLELTRYAREDTRYLLYIKDMLNNELID 431


>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
 gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
          Length = 892

 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 26/159 (16%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVETIFID------ 430
             ++   +      F   T  +D F+   I I+ I   + K         I+ D      
Sbjct: 499 NDFLTNYQQQDIVVFDTETTGLDVFNDDIIEISAIKIRNGKQIGKTLDLYIYTDKTILPK 558

Query: 431 --------LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--- 479
                     ++  + ++G+    KE L+   KF +N   + + HNI YD  +L      
Sbjct: 559 LGIKDNPLYEIYNEKLNSGELINIKEALNEFLKFADN--SILMAHNINYDYHILDNCLRR 616

Query: 480 --GISMRG----FEDIMLMSYVLDSGRSSHDIASIAQKW 512
             G ++      + D + +  +L+    S+ +  +  K+
Sbjct: 617 YTGDNLNNYNFKYFDSLKIIRLLEPSLRSYKLEHLLDKF 655


>gi|260913969|ref|ZP_05920443.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
 gi|260632056|gb|EEX50233.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
          Length = 383

 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 68/223 (30%), Gaps = 30/223 (13%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           N   +  I   + +       +     +       +   + +   I +   ++       
Sbjct: 10  NPPHFQLITTDQALADVCVFAQQKSVVALDTEFVRIRTLYPQLGLIQLYDGERVS----- 64

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
              +   LS+                 S       N++ LK+ H    D  V    Y   
Sbjct: 65  ---LIDPLSIQD--------------FSPFIALLANQNVLKVLHACSEDLEVFQHYYQQM 107

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D  +M+  L S  +S  +A++ Q +      EI K    +  + +    +   +A
Sbjct: 108 PTPMIDTQIMASFL-SFPNSTGLATLIQHYFQL---EIDKGASRTDWLARPLSDKQLVYA 163

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585
             +   +L L+  ++  L   +       ++     ++++ E 
Sbjct: 164 AADVWYLLPLYQRMQQDL---QQTPWQSAVENDCEMLLAKREQ 203


>gi|324506474|gb|ADY42763.1| DNA polymerase subunit gamma-1 [Ascaris suum]
          Length = 790

 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 27/158 (17%)

Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDL-GQKIRRAFISPPTKKLISADYSQIELRI 757
           +      A T+T R           P   ++ G  ++          L+ AD    E  I
Sbjct: 638 IAPSVIPAGTVTRRAVHKLWLTAINPKDNEMIGTGLKSMVECSEGWNLVGADVDSQEQWI 697

Query: 758 LAHIAKI------------TPLYQVFE--NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803
            A +               + +       +  D+H +VA E+            R  AK 
Sbjct: 698 AALLGDCAVGKHTAGATPFSNMLLAGNKADHSDLHSVVAKEV---------GISRDKAKV 748

Query: 804 INFSIIYGIS---PFRLATQLRIPRSEAADYIKRYFHR 838
           +N++ +YG           Q  +   +A    ++ F  
Sbjct: 749 LNYARLYGSGLNHAVEFLKQSGLADEQALRISEKLFAT 786


>gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 1113

 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
 gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+S   +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLSKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|269468831|gb|EEZ80435.1| ribonuclease D [uncultured SUP05 cluster bacterium]
          Length = 345

 Score = 44.6 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 72/196 (36%), Gaps = 29/196 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I     ++ ++  ++     +       ++ ++     + I+T    D            
Sbjct: 2   IQTPTQLRDFLHSIKDETELAIDTEFKRVNTYYPVLCLVQIATKKNTDCI---------- 51

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDI 489
                       + LT + LS L      +  L I H+ + D   LH     + +   D 
Sbjct: 52  ------------DVLTLDDLSPLFDKLYQDDCLWIVHSARQDIEALHYLSKQLPKQLFDT 99

Query: 490 MLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            + + +++   + S+   ++ +   +   ++     +    I  + D  + E+A+++   
Sbjct: 100 QIAASLVNYPAQISY--QALTESLQNVHLEKAY--TRLDWTIRPLPDEAI-EYALDDVRY 154

Query: 549 ILQLWLLLRPKLIVEK 564
           +L+ +  L+ +L VE+
Sbjct: 155 LLKNYRQLKTQLEVEE 170


>gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234]
 gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234]
          Length = 232

 Score = 44.6 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 73/207 (35%), Gaps = 36/207 (17%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---------LSVHTSQDSTGK 442
           F   T  +D+   + I I    L+ +  T   +               L+VH   D   K
Sbjct: 6   FDTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGITDDFLK 65

Query: 443 NTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMRGFE---DIMLMSY 494
           +  +  +++  +  FF +     + HN  +D         R G+     +   D + ++ 
Sbjct: 66  DKPSFADVVEEIVDFFGDAR--WVAHNATFDIGFINAEFDRLGLPPVVIDRVTDTLALAR 123

Query: 495 --------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
                    LD+    + I +         +  + L+    E++  R++++ +       
Sbjct: 124 RKHPMGPNSLDALCRRYGIDNSHRAKHGALLDSELLAEVYIEMIGGRQAALGLVTSEIGG 183

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEK 564
           +   A +   +++Q   LL P+L   +
Sbjct: 184 LAVQADDGPIIVMQRERLLAPRLTEAE 210


>gi|194755160|ref|XP_001959860.1| GF11823 [Drosophila ananassae]
 gi|190621158|gb|EDV36682.1| GF11823 [Drosophila ananassae]
          Length = 1018

 Score = 44.6 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 113/294 (38%), Gaps = 36/294 (12%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY- 452
            +TD +  + +K   I +S   +  +   K E   I++     +           +++  
Sbjct: 555 FVTDAILKYAAKNENIVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMITDG 614

Query: 453 -LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL---DSGRSSH---- 503
            LK   E+E  +K+ H+ + D   +  ++GI +R   D      +L   +SG+  +    
Sbjct: 615 GLKTVLEHEQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKY 674

Query: 504 -DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
             + S+ +++      +    K+I +  +       ++   +   A    +V++ +   L
Sbjct: 675 ISLNSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAG---DVLVLIHDQL 731

Query: 557 RPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEEN 612
              L  + K  +     +     ++ Q++   ++I +   ++VS E   + + L    ++
Sbjct: 732 FGNLARQIKPENKVLFSELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLAQTSKS 790

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           I         + S +++   L   +      K +   +   A+ LE++    NP
Sbjct: 791 I---------VLSNREI--RLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNP 833


>gi|189427224|ref|YP_001949774.1| gp6 [Salmonella phage phiSG-JL2]
 gi|189085877|gb|ACD75692.1| gp6 [Salmonella phage phiSG-JL2]
          Length = 303

 Score = 44.6 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 21/211 (9%)

Query: 1   MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPV----NAIAGFCNMLWKLLQNSR--K 54
           M+K   + ++DG   +Y++  A  + +   D +      +A A   ++L   +++ R  K
Sbjct: 18  MEKG--VLVMDGDWLVYQSMAAAEVETDWGDDIWTLECDHAKAR--SILDSAIESYRTRK 73

Query: 55  ESIASHFAVIFDYPAVTFRNEIYPD-YKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113
           ++ +    V+     V +R  +  + YK NR    + +      +    +      I+  
Sbjct: 74  KAWSDAMVVLAYTDDVNWRKVLVDETYKENRKATRKPVGY-RDFLSKLWERDEFIHIKED 132

Query: 114 GFEADDIIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172
             E DD++       E  GF    ++S DKD    +     L+ T        +      
Sbjct: 133 MLEGDDVMGIIGSGHEVFGFKKAVLVSCDKDFKT-IPDVDFLWCTTGNILTQTKE----- 186

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
               +     Q + GD  D   GIPG G   
Sbjct: 187 --TADWWHLFQTIKGDMTDGYSGIPGWGDTA 215


>gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
 gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
          Length = 236

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 49/140 (35%), Gaps = 22/140 (15%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT----- 446
               T  +D      +        +    + +   ++++    +  ++   + LT     
Sbjct: 6   LDTETTGLDPAQGHRVVELACVEMENRSLTGRHLHLYLNPGRDSDPEALAVHGLTTEFLS 65

Query: 447 -----KEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRG-----FEDIMLM 492
                +E+   L  + ++     I HN  +D   L+    R G+ +         D +L 
Sbjct: 66  GHPRFEEVAQQLVDYVKDAEV--IIHNAAFDVKFLNAELTRAGLPVFNSLCGKITDSLLH 123

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           +  L  G+  + + ++ +++
Sbjct: 124 ARELHPGK-RNSLDALCERY 142


>gi|255320255|ref|ZP_05361440.1| 3'-5' exonuclease [Acinetobacter radioresistens SK82]
 gi|255302694|gb|EET81926.1| 3'-5' exonuclease [Acinetobacter radioresistens SK82]
          Length = 218

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDS--GRS 501
            L  +IL++LK    N+  +K+G  +K D  +  + GI ++     + +S    +   + 
Sbjct: 86  QLNPDILNFLKPILANQKQVKVGFGLKNDVHLFRKKGIELQS---TVELSKCFSAFGFKQ 142

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK-L 560
              + +           +  K   S     ++S +Q+  +A  +    L ++  LR + L
Sbjct: 143 PIGLKNAVALLFQQNFPKFKKISISDWSNMRLSSTQIG-YAAADVYAALLVFQELRKRSL 201

Query: 561 IVEKLLHVYERLD 573
           + E  L + E+++
Sbjct: 202 LPEHTLRLLEQVN 214


>gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894]
          Length = 350

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|148978262|ref|ZP_01814780.1| ribonuclease D [Vibrionales bacterium SWAT-3]
 gi|145962563|gb|EDK27840.1| ribonuclease D [Vibrionales bacterium SWAT-3]
          Length = 372

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 65/209 (31%), Gaps = 33/209 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I   KD+++  Q+                                       +  T
Sbjct: 2   DYQIITQLKDLERVCQQAREADVVMLDTEF-------------------------VRTRT 36

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKLVLHR-YGIS 482
            +  L +    D    + +    L  +  F    ++   LK+ H    D  V    +  +
Sbjct: 37  YYPQLGLIQLFDGETLSLIDPIALDEMTPFVGLLKDASVLKVLHACGEDLEVFQNAFDCT 96

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D  +M+  L     S   A++  +++     ++ KS   +  + +    +  ++A
Sbjct: 97  PTPMVDTQIMAAFL-GHGLSTGFAALVSEFVGV---DLDKSESRTDWLARPLSQKQLDYA 152

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYER 571
             + + ++ ++  L  K++        ++
Sbjct: 153 AADVHYLMPMYNKLLEKVMEAGWWEAAQQ 181


>gi|242041837|ref|XP_002468313.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
 gi|241922167|gb|EER95311.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
          Length = 1489

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 19/140 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--CLY 155
            +   Q FG+P I     EA+   A        +G    +++ D D+    +      ++
Sbjct: 873 CQELLQMFGLPYIIAP-TEAEAQCAYMEINNLVDG----VVTDDSDVFLFGARNVYKNIF 927

Query: 156 DTVKE-EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           D  K  E   ++ +  + G+  E+++ +  L G   D   G+ GIG   A  ++  +   
Sbjct: 928 DDRKYVETYFMKDIESELGLTREQLIRMALLLG--SDYTEGVSGIGIVNAIEVVHAF--- 982

Query: 215 ENILINASRIKQKKRRENIL 234
                       +K +E I 
Sbjct: 983 ------PEEDGLQKFKEWIE 996


>gi|191171723|ref|ZP_03033270.1| ribonuclease D [Escherichia coli F11]
 gi|190908053|gb|EDV67645.1| ribonuclease D [Escherichia coli F11]
 gi|284921723|emb|CBG34795.1| ribonuclease D [Escherichia coli 042]
          Length = 375

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 62/221 (28%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +           
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH--------LA 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G   + 
Sbjct: 54  LIDPLGISDW--------------SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|90413373|ref|ZP_01221366.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90325615|gb|EAS42084.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 207

 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 16/124 (12%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y + +      Q+  + +     S    T ++D   ++ + IA + +  KD+     ++I
Sbjct: 9   YQRKLKNNPYAQFFNRYKGDELVSVDCETTSLDPHSAELVTIAATVI--KDNRILTSKSI 66

Query: 428 FIDLSVHTSQDSTG------------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            + L   +S D+                   KE L+ L  F  N     +G++I+YDK +
Sbjct: 67  HLTLRAPSSLDANSIAIHRIRHQDLRAGLDEKEALTTLLDFIGN--RPLVGYHIRYDKTI 124

Query: 476 LHRY 479
           L RY
Sbjct: 125 LDRY 128


>gi|309788586|ref|ZP_07683188.1| ribonuclease D [Shigella dysenteriae 1617]
 gi|308923613|gb|EFP69118.1| ribonuclease D [Shigella dysenteriae 1617]
          Length = 275

 Score = 44.6 bits (104), Expect = 0.080,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 59/221 (26%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   HYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
 gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
 gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPRISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|171679581|ref|XP_001904737.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939416|emb|CAP64644.1| unnamed protein product [Podospora anserina S mat+]
          Length = 628

 Score = 44.6 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDI 505
           +  L  L + F +   +K+ H    D + L R  G+ + G  D    S VL  G     +
Sbjct: 67  RHRLEVLNEVFADPGIVKVFHGAFMDVVWLQRDLGVYVVGLFDTHHASTVL--GYGGGSL 124

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           A + +K++ +   E  K  + +    +   +++  +A  +++ +L ++ ++R  L     
Sbjct: 125 AFLLKKFVGF---EADKRWQLADWRIRPLPAEMLYYARADTHYLLYVYDMIRNDLAA--A 179

Query: 566 LHVYERLDKPMIDVVSQMEIT 586
            H      KP+  V+++ + T
Sbjct: 180 AHTVHPDGKPIERVIAKSKKT 200


>gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 349

 Score = 44.6 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
 gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score = 44.6 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS----------FKVETIFIDLSV 433
            +     SF I T  +     + I      ++Q                K+     +L+ 
Sbjct: 420 FKDYSYVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKVTQFFIKPQAKIGAFTTELTG 479

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRGFE-- 487
            T Q    +    K+ L  +      +  + I HN K+D   L        +        
Sbjct: 480 ITQQMLDSEGLSIKDGLQRIYDCL--DGKVAIAHNAKFDFNFLKEQFRLNNVPFPNVTVI 537

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK 511
           D ++ S +       H +  +A +
Sbjct: 538 DTLIASRIGFPNYKRHKLEDVASR 561


>gi|90423836|ref|YP_532206.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
 gi|90105850|gb|ABD87887.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
          Length = 384

 Score = 44.6 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 66/202 (32%), Gaps = 38/202 (18%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T  +     +L    + +                              F  ET + 
Sbjct: 3   LITTTDQLAAVCDRLAKHPAITVDTE--------------------------FLRETTYY 36

Query: 430 DLSVHTSQDSTGKNTLTKEILSY---LKKFF---ENEHFLKIGHNIKYDK-LVLHRYGIS 482
            L +   Q ++ ++ +  + L+    LK FF    N+  LK+ H  + D  +V HR GI 
Sbjct: 37  PL-LCVVQMASAEDAVVVDTLAPGIDLKPFFDLMANDDVLKVFHAARQDIEIVWHRAGIV 95

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D  + + VL  G S      + ++   +      K+ + +    +    +   +A
Sbjct: 96  PHPIFDTQVAAMVLGYGDSI-AYDQLVERITGHRPD---KTHRFTDWARRPLTDEQLHYA 151

Query: 543 IENSNVILQLWLLLRPKLIVEK 564
           + +   +  ++  L   L    
Sbjct: 152 VSDVTHLRDVFAALDADLKKRG 173


>gi|303388735|ref|XP_003072601.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
 gi|303301742|gb|ADM11241.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
          Length = 345

 Score = 44.6 bits (104), Expect = 0.082,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 79/246 (32%), Gaps = 59/246 (23%)

Query: 8   FLV----DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           FL+    DGSS               ++  P + + GF    ++ ++      I  +   
Sbjct: 42  FLIAVRSDGSSL-------------GNEDSPTSHLVGFF---YRTIRMVELGIIPVY--- 82

Query: 64  IFD-----------YPAVTFRNEIYPDYKANRPKIPEMLLPQLPL------------VRL 100
           +FD                 R     +YK       + L+                  + 
Sbjct: 83  VFDGVPPEVKMKELEKRSERRAAADKEYKEASEMGDKKLMEMYDKRKTKVTGMHVEECKR 142

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
                GIP       EA+   A         G    + + D D +   SP      +  +
Sbjct: 143 LLGLMGIPFETAPS-EAEAYCAFLCKKKAVYG----VATEDMDALTFGSPVVLRNFSGSQ 197

Query: 161 EK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            +       ++  +++   +  E+ + L  L G   D    + GIG K A  L++++G +
Sbjct: 198 SRKLPIVEYNLPELLESLSLEHEEFIDLCILLG--CDYCGTLKGIGPKRALGLIKKHGGI 255

Query: 215 ENILIN 220
           E IL +
Sbjct: 256 EKILQS 261


>gi|83645396|ref|YP_433831.1| ribonuclease D [Hahella chejuensis KCTC 2396]
 gi|83633439|gb|ABC29406.1| ribonuclease D [Hahella chejuensis KCTC 2396]
          Length = 398

 Score = 44.6 bits (104), Expect = 0.082,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 37/259 (14%)

Query: 363 INNDSYTK--IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420
           I    Y    I     +Q+ + +LE     +                             
Sbjct: 10  IYPPDYESRWIDTPAALQEALLRLEKTDWLAVDTEF---------IRGTTFYPAPALLQL 60

Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480
             +     +D+             L     S + + FE+   LK+ H    D  + +  G
Sbjct: 61  YDRQCVYLVDM-------------LKITDWSGVSRLFESRDILKVVHACSEDLELFNCVG 107

Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           +S   G  D  + + +LD G  +  + S+ ++ L     E+ K    S    +    +  
Sbjct: 108 LSQPCGLIDTQVANALLD-GELNEGLQSLVRQNLGI---ELEKHATRSDWTQRPLTDKQI 163

Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS-----QMEITGIQIDQDL 594
           ++A E+  V+  L+  L   L +     +   L++     ++      M    +++    
Sbjct: 164 QYAQEDVVVLWPLYQKLAEALRLSGKYEIA--LEEGEAMRLAAAGVQDMGRYYLKLRGGW 221

Query: 595 -LKQVSAEISKNLLSLEEN 612
            L++ + ++   L +  E 
Sbjct: 222 RLRKGAQQLLAKLAAWREQ 240


>gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 479

 Score = 44.6 bits (104), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 47/143 (32%), Gaps = 13/143 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAIS------TLDQKDDTSFKVETIFIDLSVHT 435
           ++L  +    F   T  +       + +A +       LD +   ++      I  +   
Sbjct: 266 RRLSELNFVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTK 325

Query: 436 SQDSTGKNTLTKEILSYLKKFFEN--EHFLKIGHNIKYDKLVLHRYGISM-----RGFED 488
                  +      +  +   F +  +  + + HN  +D  +L +  +           D
Sbjct: 326 IHGVRDADVAQSPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPVVD 385

Query: 489 IMLMSYVLDSGRSSHDIASIAQK 511
            +L+S ++    + H + ++  +
Sbjct: 386 TVLLSALVFGISADHSLDALCSR 408


>gi|325123765|gb|ADY83288.1| ribonuclease D [Acinetobacter calcoaceticus PHEA-2]
          Length = 213

 Score = 44.6 bits (104), Expect = 0.083,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 20/146 (13%)

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           SE           Q      +N+ +   I N +  +   ++L+      F     +   F
Sbjct: 2   SEAVALLDKASIQQLPPFKNLNHHNIVVIENIEQCKSIEEELKNAAILGFDSE--SKPTF 59

Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462
               +   IST       +   +     ++  T              L +L+    N+  
Sbjct: 60  K---VG-EISTGPHLIQLATTQKAYLFHVNSST--------------LKFLQPILSNQKQ 101

Query: 463 LKIGHNIKYDKLVLHRYGISMRGFED 488
           +K+G  +K DK + H+ GI +    D
Sbjct: 102 IKVGFGLKNDKHIFHKKGIELESCVD 127


>gi|46123343|ref|XP_386225.1| hypothetical protein FG06049.1 [Gibberella zeae PH-1]
          Length = 807

 Score = 44.6 bits (104), Expect = 0.083,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 80/218 (36%), Gaps = 11/218 (5%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
           +    + Q   ++ I   +Y K V+ +      Q ++T  +         ++       A
Sbjct: 182 EAGTPQYQHPYEHEIVRMAYPKRVSREAEPIMYQPVDTTEATYVDTYEGVLEMLGELMKA 241

Query: 409 IAIST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
             I+  L+  D  S+      + +S              +  L  L + F N   +K+ H
Sbjct: 242 KEIAVDLEHHDFRSYVGLVSLMQISTREKDWIVDTLQPWRHKLEVLNQVFTNPKIVKVFH 301

Query: 468 NIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
               D + L R  G+ + G  D          G+ ++   S+A  +L     +    +K 
Sbjct: 302 GAYMDIIWLQRDLGLYVNGLFDTFFAC-----GQLNYPAKSLA--YLLSKFVDFDADKKY 354

Query: 527 SIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            +   ++     ++  +A  +++ +L ++  +R +L+ 
Sbjct: 355 QLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVA 392


>gi|325120384|emb|CBZ55938.1| Ribonuclease D, related [Neospora caninum Liverpool]
          Length = 1387

 Score = 44.6 bits (104), Expect = 0.084,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 9/166 (5%)

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           D +       +AI +   +     S++  T  + LS    +D         E L  L   
Sbjct: 472 DELSTGAHPLVAIDL---EHHSFHSYRGFTCLLQLST-REKDYLIDPFPLFEHLHVLNAI 527

Query: 457 FENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
             N   LKI H    D + L R + + +    D  + +  L    +    AS+A    +Y
Sbjct: 528 TANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARAL----AVPGGASLANLLHTY 583

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
              E  K  + +    +    +++ +A  +++ +  ++ +++ +L+
Sbjct: 584 CGVEANKQYQLADWRRRPLTPEMEAYARSDTHYLPFIFDVMKNQLL 629


>gi|225626336|ref|YP_002727832.1| hypothetical protein PPphikF77_gp13 [Pseudomonas phage phikF77]
 gi|225594845|emb|CAX63127.1| hypothetical protein [Pseudomonas phage phikF77]
          Length = 269

 Score = 44.6 bits (104), Expect = 0.084,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            D++  +A+++F V   +V+P+MRR AK+  F+  Y
Sbjct: 4   KDLYTNLASDMFSVPCSQVTPEMRRVAKSRAFAHAY 39


>gi|254448397|ref|ZP_05061858.1| ribonuclease D [gamma proteobacterium HTCC5015]
 gi|198262010|gb|EDY86294.1| ribonuclease D [gamma proteobacterium HTCC5015]
          Length = 384

 Score = 44.6 bits (104), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +T  ++   Q+L      +          ++ +   I I+  D        +    
Sbjct: 5   QYIQDTASLKTLCQQLAGSEWLTLDTEFLREKTYYPQLCLIQIANHD--------LIACI 56

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
             L++              + L+ L     +E  +K+ H    D+ +L++      +   
Sbjct: 57  DPLAI--------------DDLTPLYALLHDESIVKVLHAAVQDQEILYQSSQQPPKPVF 102

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + +L       D    A+        ++ KS+  +    +  + +  ++A ++  
Sbjct: 103 DTQVAASLL----GYGDQMGYAKLVEKICGVQLDKSQSRTDWSRRPLNEKQIDYAADDVR 158

Query: 548 VILQLWLLLRPKLI 561
            + +++  L+ +L 
Sbjct: 159 HLREIYQHLKTELE 172


>gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 1437

 Score = 44.6 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKD---DTSFKVETIFIDLSVHTSQD 438
           KL+      F I T  +   ++K I IA +   D K+    T+F      I  ++    +
Sbjct: 417 KLKEATYVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGRYTTFIDPHEKIPYNIQQLTN 476

Query: 439 STGKNTL-TKEILSYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDIM 490
            T +      +I   L KF E     + + HN ++D       L   G+        D +
Sbjct: 477 ITDEMVQGAPDIAEELPKFVEFVGDAVLVAHNARFDMGFIQANLKNIGMPELPNPSLDTL 536

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            ++ +L     +H + ++A K+
Sbjct: 537 ELARLLFPSLKNHRLNTLADKF 558


>gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 719

 Score = 44.6 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPI----------AIAISTLDQKDDTSFKVETIFIDLSV 433
           L  I    F   T  +D      I             +++         +       ++V
Sbjct: 524 LGEIAYTVFDTETTGLDPAGGDEILQIGATRIVNGRLLASECFDQLVDPQRSIPEAGIAV 583

Query: 434 HTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM-RGFE 487
           H  +    +   T  ++L     F  +   + +GHN+ +D   L    +  G+   +   
Sbjct: 584 HGIRPEMVRGKPTLPQVLPAFHAFAAD--TVLVGHNVAFDMRFLTLKENASGVRFDQPVL 641

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK 511
           D +L++ ++  G  SH + ++A +
Sbjct: 642 DTLLLAAIVHPGEDSHGLEAMAAR 665


>gi|327261246|ref|XP_003215442.1| PREDICTED: flap endonuclease GEN homolog 1-like [Anolis
           carolinensis]
          Length = 631

 Score = 44.6 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 15/117 (12%)

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
              +  G+P ++  G EA+ + A         G+    I+ D D   L    T   +   
Sbjct: 119 EMLECLGVPWVQAAG-EAEAMCAYLN----SNGYVDACITNDGDAF-LYGAQTVYRNFTM 172

Query: 160 EEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQ 209
             K        I  + +K G   E ++ L  L G   D +P G+PG+G + A  L+ 
Sbjct: 173 NTKDPHVDCYSISAIEEKLGCSRESLIGLAVLLG--CDYLPKGVPGVGKEQALRLIN 227


>gi|258626516|ref|ZP_05721356.1| ribonuclease D [Vibrio mimicus VM603]
 gi|258581227|gb|EEW06136.1| ribonuclease D [Vibrio mimicus VM603]
          Length = 385

 Score = 44.6 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   ++  +  F    ++   LK+ H    D  
Sbjct: 40  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVIDEMTPFVELLQDTSVLKVLHACGEDLE 99

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 100 VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 155

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPK 559
              +  E+A  +   +L ++  L  +
Sbjct: 156 LSDKQLEYAAADVFYLLPMYEKLLER 181


>gi|321254177|ref|XP_003192989.1| exosome complex exonuclease RRP6 [Cryptococcus gattii WM276]
 gi|317459458|gb|ADV21202.1| Exosome complex exonuclease RRP6 (Ribosomal RNA processing protein
           6), putative [Cryptococcus gattii WM276]
          Length = 851

 Score = 44.6 bits (104), Expect = 0.087,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 27/208 (12%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +     +   +  +   +   + V KL+     +  +                     
Sbjct: 140 KPVPPQSFDETPFEFVDTPEKFHRMVGKLKQAKEIAVDLE-------------------- 179

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS-YLKKFFENEHFLKIGHNIKYDKL 474
             D  S+   T  I +S   +       +L KEI        F +   +K+ H    D +
Sbjct: 180 HHDMRSYSGFTCLIQISTRENDWVVDTLSLRKEIQQDKFGDVFTDPTVVKVFHGADSDIV 239

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            L R + I +    D      VL   + S  ++++ Q + ++   E  K  + +    + 
Sbjct: 240 WLQRDFEIFVVNLFDTYNACVVLGMPQRS--LSALLQHYCNF---EADKRYQRADWRIRP 294

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI 561
               +  +A  +++ +L ++  LR  L+
Sbjct: 295 LPDGMLNYARSDTHFLLFIYDNLRNALL 322


>gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
 gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.087,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|262171029|ref|ZP_06038707.1| ribonuclease D [Vibrio mimicus MB-451]
 gi|261892105|gb|EEY38091.1| ribonuclease D [Vibrio mimicus MB-451]
          Length = 381

 Score = 44.6 bits (104), Expect = 0.087,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   ++  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVIDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPK 559
              +  E+A  +   +L ++  L  +
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLLER 177


>gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215]
          Length = 346

 Score = 44.6 bits (104), Expect = 0.087,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
 gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
          Length = 381

 Score = 44.6 bits (104), Expect = 0.087,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9]
          Length = 352

 Score = 44.6 bits (104), Expect = 0.089,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
 gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
          Length = 870

 Score = 44.6 bits (104), Expect = 0.089,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 99/264 (37%), Gaps = 27/264 (10%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA-------ISTLDQKDDTSFKVETI 427
           +     + + E      F + +  +D    + I IA       +  +D+ +      +++
Sbjct: 490 EKFSLLINEFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKNKKSV 549

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL------HRYG 480
                VH   D      + +E    LK+F E ++  + +GHN++YD  +L      +  G
Sbjct: 550 KDSYYVHGFSDEM-LQRIGEEKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLG 608

Query: 481 I-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT------RKEILKSRKSSIPIDKI 533
               + F D + +      G  ++ + ++++ + +          +I+ + +  +   + 
Sbjct: 609 KPKFKTFYDTLDIYRRFYPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGELLV---RA 665

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            + +++E ++E   ++ +         I +KL  +++  ++     +    I G  I   
Sbjct: 666 INEKIKETSMERMALMSKHLKAFTA--ISKKLNELFQIAERKRPYELVACVINGFNIKSM 723

Query: 594 LLKQVSAEISKNLLSLEENIYDLS 617
                + E    L  L     DL 
Sbjct: 724 YAGDENKEKLNRLRDLYALFRDLD 747


>gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 1106a]
 gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
 gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106a]
 gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
          Length = 381

 Score = 44.6 bits (104), Expect = 0.089,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
 gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.089,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|332702439|ref|ZP_08422527.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
 gi|332552588|gb|EGJ49632.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
          Length = 409

 Score = 44.6 bits (104), Expect = 0.090,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 13/134 (9%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMS----YVLD 497
           + L  + LS L +   +   +KI H+ + D   L+   G +     D  + +    Y   
Sbjct: 79  DPLGVDDLSPLVEILADPRLIKIFHSCQEDLEALYYLCGFAPGPVFDTQVAASFLGYGFQ 138

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
            G       S+ +        E+ K    S  I +        +A ++   +  ++ +L 
Sbjct: 139 PGYG-----SLVKALFGV---ELDKDETRSNWIKRPLSESQLIYAAQDVRYLPAMYSILG 190

Query: 558 PKLIVEKLLHVYER 571
             L  +  L     
Sbjct: 191 QALTEQGRLSWARE 204


>gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
 gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
 gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.092,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
 gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.092,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|33300823|ref|NP_877451.1| putative DNA binding protein [Pseudomonas phage phiKMV]
 gi|195546653|ref|YP_002117734.1| putative DNA-binding protein [Pseudomonas phage PT5]
 gi|195546715|ref|YP_002117793.1| putative DNA binding protein [Pseudomonas phage PT2]
 gi|33284794|emb|CAD44203.1| putative DNA binding protein [Enterobacteria phage phiKMV]
 gi|158187614|gb|ABW23091.1| putative DNA-binding protein [Pseudomonas phage PT5]
 gi|165880724|gb|ABY70979.1| putative DNA binding protein [Pseudomonas phage PT2]
          Length = 269

 Score = 44.6 bits (104), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            D++  +A+++F V   +V+P+MRR AK+  F+  Y
Sbjct: 4   KDLYTNLASDMFSVPCSQVTPEMRRVAKSRAFAHAY 39


>gi|311253086|ref|XP_003125405.1| PREDICTED: flap endonuclease GEN homolog 1-like [Sus scrofa]
          Length = 958

 Score = 44.6 bits (104), Expect = 0.092,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 15/117 (12%)

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159
              +  GIP ++  G EA+ + A        +G     ++ D D   L    T   +   
Sbjct: 171 DMLECLGIPWVQAAG-EAEAMCAYLNANGCVDG----CLTNDGDAF-LYGAQTVYRNFTM 224

Query: 160 EEK------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQ 209
             K        +  +    G+  + +V L  L G   D +P G+PG+G + A  L++
Sbjct: 225 NTKDPHVDCYTMSSIKNILGLDRDSLVGLAILLG--CDYLPKGVPGVGKEQALKLIK 279


>gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
 gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
          Length = 1463

 Score = 44.6 bits (104), Expect = 0.093,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITYDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210]
          Length = 348

 Score = 44.6 bits (104), Expect = 0.093,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 677

 Score = 44.6 bits (104), Expect = 0.093,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 26/148 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSK---------------PIAIAISTLDQKDDTSFKVETIF 428
           L ++    F   T  +                         + + +             F
Sbjct: 479 LRSLTFIVFDTETTGLQPSQGDQIVQIGAVRIVNGRILSGESFNRIVNPGRVIPPESIKF 538

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM- 483
             ++    +D          +L   K F  +   + + HN  +D   L     ++G+   
Sbjct: 539 HGITDDMVKDKPPLGV----VLPQFKAFAADA--VLVAHNAAFDLKFLRMNERQFGLKFD 592

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQK 511
               D M++S  LD   + H + +I  +
Sbjct: 593 NPVLDTMMLSNYLDGPETGHSLDAICDR 620


>gi|71982776|ref|NP_001021324.1| hypothetical protein C10G6.1 [Caenorhabditis elegans]
 gi|51536916|gb|AAU05593.1| Hypothetical protein C10G6.1b [Caenorhabditis elegans]
          Length = 569

 Score = 44.6 bits (104), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 395 ITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +   ++    K + + + +     D   F    +    S     D    + +  E  S  
Sbjct: 306 LWQDINNMEKKVVGLDLKTVTVGVDGEIFLSLGVIATTSQIGIFDLASSDVIILE--SGF 363

Query: 454 KKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLD 497
           K   E+E  +K+ H+ +    +L H+Y + MR   D  +   +L 
Sbjct: 364 KGILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQVAHSLLQ 408


>gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974]
 gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1463

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112]
          Length = 343

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 1462

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 62/168 (36%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D+      L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDMA-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|71982768|ref|NP_001021323.1| hypothetical protein C10G6.1 [Caenorhabditis elegans]
 gi|14573791|gb|AAB00620.2| Hypothetical protein C10G6.1a [Caenorhabditis elegans]
          Length = 574

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 395 ITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +   ++    K + + + +     D   F    +    S     D    + +  E  S  
Sbjct: 306 LWQDINNMEKKVVGLDLKTVTVGVDGEIFLSLGVIATTSQIGIFDLASSDVIILE--SGF 363

Query: 454 KKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLD 497
           K   E+E  +K+ H+ +    +L H+Y + MR   D  +   +L 
Sbjct: 364 KGILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQVAHSLLQ 408


>gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47368]
          Length = 1463

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|327352334|gb|EGE81191.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1064

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 86/265 (32%), Gaps = 33/265 (12%)

Query: 313  GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
            G+       +  T     FS+ S   S   SE +P K +   L K          Y   +
Sbjct: 768  GLFNRVPFSKYHTKAAGGFSASSTHASNGQSETSPSKCWSYNLNKTPDGKDITVHYCTSL 827

Query: 373  NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA-IAISTLDQKDDTSFKVETIFIDL 431
             T +     Q   +       +      +     +  +++  L  K+  +     +F   
Sbjct: 828  QTSERVA--QHFLSETVVGLDLEWKAQASTRDALVDNVSMIQLASKERIAVFHLALFNPA 885

Query: 432  SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI- 489
            +      S             LK+  E+   +K+G  I+ D   L+++ G+      ++ 
Sbjct: 886  NSPQHLVSP-----------TLKRLLESPELVKVGVAIRADCTRLYKFLGLQTTNLCEVS 934

Query: 490  ---MLMSYVLDS---GRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQ 539
                ++ + L+     +   ++A   ++ L     +            +   ++      
Sbjct: 935  RLHKVVKHHLNPKLINKRLVNLAEQVEEHLGLPLDKDPEIRCGGWSKKLNYRQV------ 988

Query: 540  EHAIENSNVILQLWLLLRPK-LIVE 563
            ++   +    LQL+ +L  K L +E
Sbjct: 989  QYVATDPYAALQLFHVLEAKRLKLE 1013


>gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA]
 gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae JJA]
          Length = 1463

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17570]
          Length = 1463

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNAAF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222]
 gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222]
          Length = 397

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 66/209 (31%), Gaps = 33/209 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I   KD+++  Q+                                       +  T
Sbjct: 27  DYQIITQVKDLERVCQQAREADVVMLDTEF-------------------------VRTRT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKLVLHR-YGIS 482
            +  L +    D    + +    L  +  F    ++   LK+ H    D  V    +G +
Sbjct: 62  YYPQLGLIQLFDGETLSLIDPIALDEMTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCT 121

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D  +M+  L     S   A++  +++     ++ KS   +  + +    +  ++A
Sbjct: 122 PTPMVDTQIMAAFL-GHGLSTGFAALVSEFVGV---DLDKSESRTDWLARPLSQKQLDYA 177

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYER 571
             + + ++ ++  +  K++        ++
Sbjct: 178 AADVHYLMPMYNKILEKVMEAGWWEAAQQ 206


>gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
 gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
          Length = 1463

 Score = 44.3 bits (103), Expect = 0.096,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|194434924|ref|ZP_03067168.1| ribonuclease D [Shigella dysenteriae 1012]
 gi|194416812|gb|EDX32937.1| ribonuclease D [Shigella dysenteriae 1012]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.096,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKSILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|307172596|gb|EFN63955.1| Exonuclease 3'-5' domain-like-containing protein 1 [Camponotus
           floridanus]
          Length = 651

 Score = 44.3 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 91/224 (40%), Gaps = 26/224 (11%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL---DSGRSSH----- 503
           L+K  E+ H +K+ H+ + D + L+  + I++    D      VL   ++G+  +     
Sbjct: 289 LQKLLEHPHVIKVIHDCRNDSVNLYNQFTITLMNVFDTQAAHAVLQFQETGKPVYKVKNV 348

Query: 504 DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
           ++ ++   +      L    K I +  +       ++   +   + +  +++ Q++  + 
Sbjct: 349 NLNTLCDHYGAPCNPLKEQLKNIYRKDQRYWSRRPMTRDMLIYASSDVLSLVPQVYNAM- 407

Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            +LI  ++  ++  L +  I    QM I     D    ++   ++   ++ L++ + + +
Sbjct: 408 SRLIKPEVQGLFAELCEEQI----QMHIR--PADVKA-RKRQRKMETEMVDLKKRMEEAT 460

Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            +   LS+ +     L   +      K K       A+ LE++ 
Sbjct: 461 SKNIVLSNRE---IRLLRWMDLTEDEKEKLKANHKVARKLEKLE 501


>gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
 gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
          Length = 208

 Score = 44.3 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 16/138 (11%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLS------VHTSQ 437
             G  +  I T  +       I + A+  +  K    F         +          + 
Sbjct: 9   ETGYVALDIETTGLSPRSCSIIEVGALKFVPGKKGEEFSSLIDPGCPIPASGRSIHGITD 68

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL----VLHRYGISMRG--FEDIML 491
           D        +E+++ L  F        + HN  +D      VL + G   +     D + 
Sbjct: 69  DMVAGQPRVEEVIAGLLDFV--GPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMTVFDTLP 126

Query: 492 MSYVLDSGRSSHDIASIA 509
           +S V   G  S+ + S++
Sbjct: 127 LSRVAFPGLRSYSLESLS 144


>gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 668]
 gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 668]
          Length = 381

 Score = 44.3 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 381

 Score = 44.3 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
 gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
          Length = 896

 Score = 44.3 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 65/205 (31%), Gaps = 34/205 (16%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID------- 430
            ++++         F   T  ++ F    I IA   +   +     ++            
Sbjct: 503 AEFLRAYNEEEIVVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILPM 562

Query: 431 --------LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
                    +++  + STG+     + L     +        +GHN  YD  +L     +
Sbjct: 563 LGDKENPMYAIYHEKMSTGELLSPSDALQRFLAYV--GTSPILGHNANYDYNILDN---N 617

Query: 483 MRGF-EDIMLMS-----------YVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSI 528
           ++ + +D M               +L     S+ + S+ + +        + +   K+++
Sbjct: 618 LQRYCKDTMQAHDIRCFDSLKLIRLLAPSLHSYKLESLLETFHLAGVNSHQAIDDVKATV 677

Query: 529 PIDKISDSQVQEHAIENSNVILQLW 553
            + ++   + +E   +    I    
Sbjct: 678 SLVRLCAEKAREKQAQQEAFIHHPK 702


>gi|260855663|ref|YP_003229554.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
 gi|257754312|dbj|BAI25814.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|144899165|emb|CAM76029.1| Ribonuclease D [Magnetospirillum gryphiswaldense MSR-1]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 67/208 (32%), Gaps = 27/208 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I +T ++  + Q+L +    +          ++ +   + ++  D+              
Sbjct: 11  IADTAELAAFCQRLSSAPYITVDTEFMREKTYYPQLCLVQLAGPDEARAV--------DP 62

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI 489
           L+                 L+ L +   N + LK+ H  + D  +     G       D 
Sbjct: 63  LAPGMD-------------LAPLFELMANPNVLKVFHAARQDVEIFLHLSGAVPAPLFDT 109

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + + V   G S     ++A +     +  I KS++ +    +    +  ++A+ +   +
Sbjct: 110 QVAAMVCGFGDSV-GYETLASQ---LAKARIDKSQRFTDWALRPLTEKQVQYALADVTHL 165

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMI 577
              +  L  KL     L      +   +
Sbjct: 166 RVAYEKLVRKLERNGRLDWLVD-EMAEL 192


>gi|157370999|ref|YP_001478988.1| ribonuclease D [Serratia proteamaculans 568]
 gi|157322763|gb|ABV41860.1| ribonuclease D [Serratia proteamaculans 568]
          Length = 390

 Score = 44.3 bits (103), Expect = 0.100,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 58/212 (27%), Gaps = 29/212 (13%)

Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414
           L   S    +  +Y  I     +QQ   + +     +          ++ +   I +   
Sbjct: 7   LNHESDQENDVLNYQLITTDAGLQQVCDQAKKHAQIALDTEFVRTRTYYPQLGLIQLYDG 66

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
           +Q          +   L +   Q                 +   N   +K  H    D  
Sbjct: 67  EQLS--------LIDPLPIKQWQP--------------FIELLSNTQVVKFLHAGSEDLE 104

Query: 475 VLHRYGISMR-GFEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           V      ++     D   L ++       S   A++  ++      E+ KS   +  + +
Sbjct: 105 VFLNAFKTLPTPMVDTQILAAFTGRP--MSCGFATLVAEY---MEVELDKSEARTDWLAR 159

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
               +   +A  +   +L +   L  +     
Sbjct: 160 PLTEKQCVYAAADVFYLLPMAKRLVQETEEAG 191


>gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98]
          Length = 334

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|260868323|ref|YP_003234725.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
 gi|257764679|dbj|BAI36174.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|242239440|ref|YP_002987621.1| ribonuclease D [Dickeya dadantii Ech703]
 gi|242131497|gb|ACS85799.1| ribonuclease D [Dickeya dadantii Ech703]
          Length = 403

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/195 (9%), Positives = 59/195 (30%), Gaps = 29/195 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     + +   +   +   +          ++ +   I +               
Sbjct: 31  NYQLITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQL--------------- 75

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
                     +  +  + L+  +         +    K  H    D  V    +G+    
Sbjct: 76  -------FDGERLSLIDPLSITVWQPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTP 128

Query: 486 FEDIMLM-SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           F D  ++ +++      S+  A++   ++  T   + KS   +  + +    +  ++A  
Sbjct: 129 FVDTQILVAFLGKP--LSYGFAALVADYMQVT---LDKSESRTDWLARPLSEKQCQYAAA 183

Query: 545 NSNVILQLWLLLRPK 559
           +   +L + + L  +
Sbjct: 184 DVYYLLPMAIRLVEE 198


>gi|296108985|ref|YP_003615934.1| flap structure-specific endonuclease [Methanocaldococcus infernus
           ME]
 gi|295433799|gb|ADG12970.1| flap structure-specific endonuclease [Methanocaldococcus infernus
           ME]
          Length = 323

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 34/217 (15%)

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155
              +      GIP ++    E +   +         G    ++S D D +   +P     
Sbjct: 130 ENCKYLLSLMGIPYVQAPS-EGEAQASYMAKK----GDVWAVVSQDYDSLLYGAPRVVRN 184

Query: 156 DTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQEY 211
            T  +   E I++  V++   I  + ++ +  + G   D  P GI GIG+K A  +++  
Sbjct: 185 LTTTKDELELIELNEVLENLRISLDDLIDIAIMMG--TDYNPKGIEGIGFKRAYEMVR-- 240

Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271
                     +R+ +   ++ +  Y E   + +         P       L L   +   
Sbjct: 241 ----------ARVAKDILKKEVKNYEEIKNIFKN--------PRVTDDYSLNLRLPDKEG 282

Query: 272 LISFLKA---LEFTKLINRVATTYDCDAANIEPVVLD 305
           LI FL       + ++   V   Y+   +  +   LD
Sbjct: 283 LIKFLVEEHDFNYERVKKHVDKLYNLIVSKTKQRTLD 319


>gi|73989270|ref|XP_860452.1| PREDICTED: similar to DNA-repair protein complementing XP-G cells
           (Xeroderma pigmentosum group G complementing protein)
           (DNA excision repair protein ERCC-5) isoform 2 [Canis
           familiaris]
          Length = 253

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 133 QELLRLFGIPYIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 187

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 188 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 245

Query: 214 LENIL 218
           LE +L
Sbjct: 246 LEPLL 250


>gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49]
          Length = 1462

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 62/168 (36%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D+      L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDMA-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 61/178 (34%), Gaps = 22/178 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTL--DQKDDTSFKVETIFIDLSV------HT 435
           L       F + T  +   +   I +A   +   Q  D           LS         
Sbjct: 423 LADTTYVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDKYESFANPHHPLSATTIELTGI 482

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDI 489
           + D        ++++     F  +   + + HN  +D   L     ++G+   +    D 
Sbjct: 483 TDDMVRNAPEVEQVIKEFHAFIGDA--IVVAHNASFDIGFLYTGYKKFGLEDTVHPVIDT 540

Query: 490 MLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSS---IPIDKISDSQVQEH 541
           + ++ +L     +H + ++ +K+   L+   + I  +  +    + + K +D    ++
Sbjct: 541 LELARLLYPTMKNHRLNTLCKKFNIELTQHHRAIYDTEATGYLLLQLLKDADELAIKY 598


>gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1]
 gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 1438

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 75/197 (38%), Gaps = 38/197 (19%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQ---KDDTSFKVETIFIDLSVHTSQ--- 437
           L +     F + T  +    ++ I    S ++    K+   F ++     +    ++   
Sbjct: 400 LSSQTYVVFDLETTGLSPRFNEIIEFGASIIENGIIKESHQFFIKP-TKPIPPSITEITK 458

Query: 438 ---DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS---MRGFE 487
              ++       +E +  +    +N   + + HN K+D  V      +YG+    + G +
Sbjct: 459 ITDNTVANGYSQEEGVRKIYDILKN--RICVAHNAKFDINVCKENFLKYGLDNSKIIGID 516

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            + +  +++D  +S + +  +A+K+  Y  +                       A  ++N
Sbjct: 517 SLAIARFLIDEAKS-YRLEIVAKKFNVYYAR------------------NEAHRADYDAN 557

Query: 548 VILQLWLLLRPKLIVEK 564
           V+  +W+L+  KL  EK
Sbjct: 558 VLANVWILMILKLAREK 574


>gi|330970024|gb|EGH70090.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 607

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPELILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDSAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1410

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 24/193 (12%)

Query: 390 ASFKIITDTMDAFHSKPIAIA------ISTLDQKDDTSFKVETIFIDLSVHTS--QDSTG 441
             F I T  + + +   I I          +D  +        I   ++  T    D   
Sbjct: 400 VVFDIETTGLSSINDNIIEIGAVKIKNFQIVDTFETFVNPQVHISKFITKLTGITDDMVK 459

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM-RGFEDIMLMSYVL 496
           +    +EIL     F ++   + + HN  +D   +       G+ +     D + +S  +
Sbjct: 460 EYPSIEEILPKFLDFIKD--SILVAHNANFDVTFIKTKARNLGMEVDNPVLDTLELSRHM 517

Query: 497 DSGRSSHDIASIAQK----WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
                ++ + ++AQ       ++ R        + I I  I  ++++E+ IE  N I   
Sbjct: 518 YENLKNYKLDTVAQHLGVSLENHHRAVDDAKATAEIFIKSI--NKLKENGIEKVNEINDY 575

Query: 553 WLLLRPKLIVEKL 565
              L+ K+ ++K+
Sbjct: 576 ---LKNKVDIKKM 585


>gi|289739467|gb|ADD18481.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 349

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L+         +      I   LK    ++  +K+G N   D   L   YGI +    DI
Sbjct: 73  LASPNGFCGLFRLCHMDHIPESLKNLLADKEIIKVGVNPAEDARKLQGDYGIYVASTFDI 132

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
             ++ ++        +  +++  L+    +     +S+   DK+ D QV E+A  ++   
Sbjct: 133 RYLAAMIR--CKPLGLEKLSRSLLNVDFVKPWYIARSNWEFDKLDDDQV-EYAANDAFAG 189

Query: 550 LQLWLLLRPKLI 561
           ++++  L  +L 
Sbjct: 190 VEIFKHLANRLK 201


>gi|316933724|ref|YP_004108706.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
 gi|315601438|gb|ADU43973.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
          Length = 387

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 12/153 (7%)

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY---LKKFF---ENEHFLKIGHNIKYD 472
           DT F  ET F  L +   Q ++ ++ L  + L+    LK FF    NE  LK+ H  + D
Sbjct: 26  DTEFLRETTFYPL-LCVVQMASAEDALVIDALADGIDLKPFFDLMANEQVLKVFHAARQD 84

Query: 473 K-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
             +V HR GI      D  + + VL  G S      + ++   +   +    R +     
Sbjct: 85  IEIVWHRAGIVPHPIFDTQVAAMVLGYGDSI-AYDQLVERITGHRPDKTH--RFTDWSRR 141

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            ++  QV  +A+ +   +  ++  L   L    
Sbjct: 142 PLTQEQV-HYAVSDVTHLRDVFAALDADLKKRG 173


>gi|66046127|ref|YP_235968.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae
           B728a]
 gi|76803829|sp|Q52377|UVRC_PSEU2 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|63256834|gb|AAY37930.1| Excinuclease ABC, C subunit [Pseudomonas syringae pv. syringae
           B728a]
          Length = 607

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPELILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDSAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14]
          Length = 323

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 30/186 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK 447
             + T    A   +   I +  ++    +++      +          +  +        
Sbjct: 18  VDLETTGGSAAEHRITEIGVVVVNANGVSTWTTLVDPQQPIPPFIQQLTGITDAMVRGAP 77

Query: 448 EILSYLKKFFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRS 501
                    FE  +  L + HN  +D+  L     R GI+        + +S  L    S
Sbjct: 78  TFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRES 137

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
            H + ++ ++                           +  A+ ++++I Q W  L   + 
Sbjct: 138 RHGLDALIERH--------------------ALAPSARHRALADADLIWQFWQKLHAVIP 177

Query: 562 VEKLLH 567
            E+L  
Sbjct: 178 AEQLSE 183


>gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia]
          Length = 669

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 78/206 (37%), Gaps = 14/206 (6%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L+     S+   T  I LS  T         L K++   L   F N   +K+ H    D 
Sbjct: 224 LEHNHSISYLGVTCLIQLSTRTQDYIIDPFPLWKQLGDMLSVVFTNPRIVKVFHGADNDV 283

Query: 474 LVLHR-YGISMRGFEDIMLMSY-VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
             L R +G+ +    D    S  +L    S   + S       Y +K   K+ +++    
Sbjct: 284 QWLQRDFGLYIVNLFDTFQASKELLLMQNSFQFLLS------EYCKKSTDKTYQTADWTQ 337

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID----VVSQMEITG 587
           +    ++ ++A  +++ +L ++  +R  L   KL    E L+         V+ + + T 
Sbjct: 338 RPLSDEMIKYAQIDTHYLLYIYDRMRQDLK--KLNKPNENLNNVPNYYIESVLKRSKDTA 395

Query: 588 IQIDQDLLKQVSAEISKNLLSLEENI 613
           ++I +  L+     +   L   +  +
Sbjct: 396 LKIYKKPLQDQDQSLQTILNKQDRRM 421


>gi|323175119|gb|EFZ60733.1| ribonuclease D [Escherichia coli LT-68]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|262404337|ref|ZP_06080892.1| ribonuclease D [Vibrio sp. RC586]
 gi|262349369|gb|EEY98507.1| ribonuclease D [Vibrio sp. RC586]
          Length = 381

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 93/292 (31%), Gaps = 30/292 (10%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   ++  +  F    ++   LK+ H    D  
Sbjct: 36  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVMDEMTPFVELLQDTSVLKVLHACGEDLE 95

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 96  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 151

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQ 592
              +  E+A  +   +L ++  L  ++          +  +  +   +         +D 
Sbjct: 152 LSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQESELQVAKRIKVSNPEHAYLDI 211

Query: 593 DLLKQVSAEISKNLLSLEENIYD------------------LSGEKFNLSSPKQLGDILF 634
               Q+  +    L  L    Y                   L+  +  L SPK++ +   
Sbjct: 212 KGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLALRSPKRMEE--- 268

Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686
             +   +  +  +         LE       P I  I+E+    ++     D
Sbjct: 269 EGVDPHAIRRHSSKIIAMVKAALETPADAYPPEIVPIMEYPGYKQLFKRLKD 320


>gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 234

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 22/139 (15%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL-TKEI 449
           F   T  +   +  + + I    L  K +T       F         D+  ++     + 
Sbjct: 6   FDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNP---QRPMDAVAESIHGLSDA 62

Query: 450 LSYLKKFFENEH---------FLKIGHNIKYDKLVLH----RYG---ISMRGFEDIMLMS 493
               K  F ++             + HN  +D   L+    + G   I M    D + ++
Sbjct: 63  FLADKPLFADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVDTLAIA 122

Query: 494 YVLDSGRSSHDIASIAQKW 512
                G   H + ++  ++
Sbjct: 123 RGKHPGA-KHTLDALCTRY 140


>gi|239614893|gb|EEQ91880.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis ER-3]
          Length = 1112

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 86/265 (32%), Gaps = 33/265 (12%)

Query: 313  GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
            G+       +  T     FS+ S   S   SE +P K +   L K          Y   +
Sbjct: 768  GLFNRVPFSKYHTKAAGGFSASSTHASNGQSETSPSKYWSYNLNKTPDGKDITVHYCTSL 827

Query: 373  NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA-IAISTLDQKDDTSFKVETIFIDL 431
             T +     Q   +       +      +     +  +++  L  K+  +     +F   
Sbjct: 828  QTSERVA--QHFLSETVVGLDLEWKAQASTRDALVDNVSMIQLASKERIAVFHLALFNPA 885

Query: 432  SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI- 489
            +      S             LK+  E+   +K+G  I+ D   L+++ G+      ++ 
Sbjct: 886  NSPQHLVSP-----------TLKRLLESPELVKVGVAIRADCTRLYKFLGLQTTNLCEVS 934

Query: 490  ---MLMSYVLDS---GRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQ 539
                ++ + L+     +   ++A   ++ L     +            +   ++      
Sbjct: 935  RLHKVVKHHLNPKLINKRLVNLAEQVEEHLGLPLDKDPEIRCGGWSKKLNYRQV------ 988

Query: 540  EHAIENSNVILQLWLLLRPK-LIVE 563
            ++   +    LQL+ +L  K L +E
Sbjct: 989  QYVATDPYAALQLFHVLEAKRLKLE 1013


>gi|261190752|ref|XP_002621785.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis SLH14081]
 gi|239591208|gb|EEQ73789.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis SLH14081]
          Length = 1112

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 86/265 (32%), Gaps = 33/265 (12%)

Query: 313  GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
            G+       +  T     FS+ S   S   SE +P K +   L K          Y   +
Sbjct: 768  GLFNRVPFSKYHTKAAGGFSASSTHASNGQSETSPSKYWSYNLNKTPDGKDITVHYCTSL 827

Query: 373  NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA-IAISTLDQKDDTSFKVETIFIDL 431
             T +     Q   +       +      +     +  +++  L  K+  +     +F   
Sbjct: 828  QTSERVA--QHFLSETVVGLDLEWKAQASTRDALVDNVSMIQLASKERIAVFHLALFNPA 885

Query: 432  SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI- 489
            +      S             LK+  E+   +K+G  I+ D   L+++ G+      ++ 
Sbjct: 886  NSPQHLVSP-----------TLKRLLESPELVKVGVAIRADCTRLYKFLGLQTTNLCEVS 934

Query: 490  ---MLMSYVLDS---GRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQ 539
                ++ + L+     +   ++A   ++ L     +            +   ++      
Sbjct: 935  RLHKVVKHHLNPKLINKRLVNLAEQVEEHLGLPLDKDPEIRCGGWSKKLNYRQV------ 988

Query: 540  EHAIENSNVILQLWLLLRPK-LIVE 563
            ++   +    LQL+ +L  K L +E
Sbjct: 989  QYVATDPYAALQLFHVLEAKRLKLE 1013


>gi|88603762|ref|YP_503940.1| flap endonuclease-1 [Methanospirillum hungatei JF-1]
 gi|121721338|sp|Q2FNC9|FEN_METHJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|88189224|gb|ABD42221.1| flap endonuclease 1 [Methanospirillum hungatei JF-1]
          Length = 333

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 98/314 (31%), Gaps = 85/314 (27%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +D  +    A Y    + R+ DG P         + ++G F      L Q  R       
Sbjct: 27  IDAFN----ALYQFLSIIRQPDGTPLMDDSGRITSHLSGIFFRTANFLTQGIRP------ 76

Query: 61  FAVIFDYPAVT--FR------------NEIYPDYKA-------NRPKIPEMLLPQLPL-- 97
              IFD  +     R             E +   K         R  +    +    L  
Sbjct: 77  -VFIFDGKSPEMKGRTIQERRDVREESKEKWDQAKKEGDLAGAFRYAMSSTAIDAYILSS 135

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            R   Q  G+P ++    E +   A      + +     ++S D D +   +P      T
Sbjct: 136 ARQLIQLMGLPVVDAPS-EGEAQGAYMVLKGDAD----YVVSQDYDTLLFGTPVLVRNLT 190

Query: 158 VKE-------------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204
           +               E+I +  V+    I  E+++ +  LTG   D  PGI GIG KT 
Sbjct: 191 ISGKRRLHGRQITVQPERIVLSDVLSTLDITREQLIEIAILTG--TDFNPGIRGIGAKTG 248

Query: 205 ALLLQ--EYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHL 262
              ++  E+ ++               RE + ++      S  L    TD         L
Sbjct: 249 LKKIKSGEFDSI--------------IREKLPDFDPEPVRSFFLNPPVTDSYT------L 288

Query: 263 ILEDCNGPRLISFL 276
                +   + +FL
Sbjct: 289 DPGRIDRDGIRAFL 302


>gi|325182167|emb|CCA16620.1| exonuclease 1 putative [Albugo laibachii Nc14]
          Length = 701

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 31/188 (16%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-- 156
           R   +   I  +    +EAD  +A         G    +I+ D D +             
Sbjct: 153 RQRLRQKNIKYVVAP-YEADAQLAYLVKCGLVNG----VITEDSDCLVFDCNKVVFKMDW 207

Query: 157 TVKEEKIDIEHVIKK-----WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             K ++I ++ +++       G   +  + +   +G   D +  IP +G KT+  L ++Y
Sbjct: 208 NGKGQEIKVQSILRNSEPNMQGFTHDMFMEMCIFSG--CDYLANIPRLGLKTSYNLFRKY 265

Query: 212 GNLENILINASRIKQKKRRENILEYAETAR-----------LSRKLVMLRTDVPITIPLE 260
           G++  +L N     + K   +  E    A+           L++KL      V ++ P +
Sbjct: 266 GSVRKVLRNLRLEGKVKVPASYEEDFAKAKLTFKHQRVYDPLNKKL------VFLSSPPD 319

Query: 261 HLILEDCN 268
            L  +  +
Sbjct: 320 DLKEQIMD 327


>gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
           nagariensis]
 gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
           nagariensis]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 6/150 (4%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L+     SF+  T  + +S  T+        L  ++   L + F +   +K+ H    D 
Sbjct: 26  LEHHSHRSFQGFTCLMQISTRTTDYVVDTLALRNQLGPALARVFADPRVVKVFHGADSDV 85

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
             L R + + +    D    + VL  G  S  +A + +   S    +  K  + +    +
Sbjct: 86  DWLQRDFSLFLVNMFDTGQAARVL--GLPSFGLAYLLE---SICGVQADKRYQMADWRVR 140

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                +  +A  +++ +L ++  LR +L  
Sbjct: 141 PLSPPMLHYARCDTHYLLYVYDKLREQLAA 170


>gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031]
 gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae P1031]
          Length = 1463

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 61/168 (36%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  +       L       F + T  + A ++  I +A         
Sbjct: 401 EANIVEDRVPIVYNEVERD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +  + +     +L+   + D        +++L   ++F ++   + + HN  
Sbjct: 456 IAEFDEFINPGYPLSAFTTELTG-ITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNAT 512

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 513 FDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 1454

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 72/245 (29%), Gaps = 18/245 (7%)

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
               L    +   D     +  +      +E  G+    ++ +       +  +++D + 
Sbjct: 316 SVNVLEKENSKKEDRAEEKMVELHAHTKMSEMVGVTDVEDLIKRAKEYGHKAIAITDYSV 375

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI--QQWVQKLETIGSASFKIITD 397
             +     +        +     I       I +   +      +K++      F I T 
Sbjct: 376 VHSYPAAFKTAKKFSTDEEKMKAIFGCEMYMIDDEAPMVTNPKDKKIDEEEFVVFDIETT 435

Query: 398 TMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEI 449
            +++  ++ I I    +      D   ++      +  H ++      +         E+
Sbjct: 436 GLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQVANEPKIDEV 495

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMR-GFEDIMLMSYVLDSGRSSH 503
           +     F  +   + + HN  +D   + R       I ++    D + M+  L      +
Sbjct: 496 IGKFIDFVGDA--VLVAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQMARDLFPDLKKY 553

Query: 504 DIASI 508
            +  +
Sbjct: 554 GLGDL 558


>gi|289743943|gb|ADD20719.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 514

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 69/203 (33%), Gaps = 28/203 (13%)

Query: 373 NTKDIQQWVQKLE----TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
                   V+KL+          F     T+     +P+A+            F++  + 
Sbjct: 61  TQSKCDDMVEKLKRHCWDYKVLGFDCEWITIG-RVRRPVALLQLASPNGFCGLFRLCHM- 118

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
                               I   LK    ++  +K+G +   D   L   YGI +    
Sbjct: 119 ------------------DHIPESLKNLLADKDIIKVGVDPAGDARKLRADYGIYVASTF 160

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI  ++ ++        +  +++  L+    +     +S+   DK+ D QV E+A +++ 
Sbjct: 161 DIRYLAVMIR--CKPLGLEKLSRSLLNVDFVKPWYIARSNWEFDKLDDDQV-EYAAKDAF 217

Query: 548 VILQLWLLLRPKLIVEKLLHVYE 570
             ++++  L  +L      +   
Sbjct: 218 AGVEIFKHLANRLEPRNYWNFTY 240


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 102/325 (31%), Gaps = 27/325 (8%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLS------VHT 435
           L       F + T  + A ++K I +A   +   +  D   +       L+         
Sbjct: 414 LLDSEFVVFDVETTGLSAVYNKIIELAAVKVKNGEIIDRFERFADPHEPLTNTIIELTGI 473

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL------HRYGISMRGFEDI 489
           + D        +++L+    F  +   + + HN  +D   L         G +     D 
Sbjct: 474 TDDMLKGQPEVEQVLNEFHAFIGDA--VLVAHNASFDMGFLNTGFQKMGLGEAKNPVIDT 531

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + +   L     +H + ++ +K+      E++           I D++   H +      
Sbjct: 532 LELGRFLYPTLKNHRLNTLCKKF----DIELV------SHHRAIYDAEATGHLLWRMVKD 581

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
                +L    + + +        +P   ++      G++    L+     E       +
Sbjct: 582 ATERDILYHDQLNDNMGEGNFHRQRPSHCILLAQTQEGLKNLYKLVSMAHVEYFYRTPRI 641

Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669
             +      E   + S    G++ F  +   +  + +         +++ +   ++ I K
Sbjct: 642 PRSQLQKHREGILVGSGCDKGEV-FEGMMQKTPQEVEEIAKFYDYIEVQPLANYEHLIEK 700

Query: 670 NILEWRQLSKIKSTYADSLPNHINK 694
            +++ R+  +        L   + K
Sbjct: 701 ELVKSREALQEIVANIVKLGEQLGK 725


>gi|309356436|emb|CAP37027.2| CBR-EGAL-1 protein [Caenorhabditis briggsae AF16]
          Length = 578

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 395 ITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +   ++    K + + + +     D   F    +    S     D    + +  E  S  
Sbjct: 306 LWQDINNMEKKVVGLDLKTVTVGVDGEIFLSLGVIATTSQIGIFDLASSDVIILE--SGF 363

Query: 454 KKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLD 497
           K   E+E  +K+ H+ +    +L H+Y + MR   D  +   +L 
Sbjct: 364 KGILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQVAHSLLQ 408


>gi|16129758|ref|NP_416318.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655]
 gi|89108643|ref|AP_002423.1| ribonuclease D [Escherichia coli str. K-12 substr. W3110]
 gi|170081460|ref|YP_001730780.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B]
 gi|238901018|ref|YP_002926814.1| ribonuclease D [Escherichia coli BW2952]
 gi|301019362|ref|ZP_07183546.1| ribonuclease D [Escherichia coli MS 196-1]
 gi|133152|sp|P09155|RND_ECOLI RecName: Full=Ribonuclease D; Short=RNase D
 gi|75765643|pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
           Exoribonuclease Involved In Structured Rna Processing
 gi|581215|emb|CAA30098.1| unnamed protein product [Escherichia coli]
 gi|1736427|dbj|BAA15599.1| ribonuclease D [Escherichia coli str. K12 substr. W3110]
 gi|1788105|gb|AAC74874.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655]
 gi|169889295|gb|ACB03002.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B]
 gi|238863466|gb|ACR65464.1| ribonuclease D [Escherichia coli BW2952]
 gi|299882254|gb|EFI90465.1| ribonuclease D [Escherichia coli MS 196-1]
 gi|309702026|emb|CBJ01340.1| ribonuclease D [Escherichia coli ETEC H10407]
 gi|315136445|dbj|BAJ43604.1| ribonuclease D [Escherichia coli DH1]
 gi|226093|prf||1410308A ribonuclease D
          Length = 375

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|332024515|gb|EGI64713.1| Exosome component 10 [Acromyrmex echinatior]
          Length = 885

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 114/369 (30%), Gaps = 68/369 (18%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           +++ ++  I    DI   ++ L      +  +   +   F      + IST+        
Sbjct: 259 LDDTNFVFIDKPADINILLEDLRNHKEIAVDLEHHSYRTFQGITCLMQISTIQT------ 312

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGI 481
                          D        +  L  L + F     LK+ H    D L L R   +
Sbjct: 313 ---------------DYLIDTLSLRSELYQLNEIFTKPSILKVFHGADMDILWLQRDLSL 357

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQ 539
            +    D    +  L+       +  ++  +L      I  ++   +   +I     ++ 
Sbjct: 358 YVVNMFDTHQAAKQLN-------LPYLSLAYLLNKYCGIDPNKHFQLADWRIRPLPLELM 410

Query: 540 EHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
           ++A E+++ +L +  +L+ +L        ++ + +     ++  +  +  I         
Sbjct: 411 KYAREDTHYLLYVKDMLKNELIDAANGKSNILKAVYDQSTEICKRTYVKPIWT------- 463

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
                         N+Y  S + FN    KQ+  +L         A+ +         + 
Sbjct: 464 ---------EESCMNMYRKSQKSFN---NKQIYALLELHRWRDLTARQEDDSIGYILPNH 511

Query: 658 EQINCGD-------------NPIIKNILE-WRQLSKIKSTYADS-LPNHINKRTQRVHTF 702
             +N  +             NPI   + +   ++ KI     +  L   I ++  R    
Sbjct: 512 MLLNIAETLPREMQGILACCNPIPPLVRQNLLKIHKIVLKAREQPLVKSIAEQDIRQRPT 571

Query: 703 YSLASTMTG 711
                T TG
Sbjct: 572 Q-QNHTDTG 579


>gi|307352874|ref|YP_003893925.1| flap structure-specific endonuclease [Methanoplanus petrolearius
           DSM 11571]
 gi|307156107|gb|ADN35487.1| flap structure-specific endonuclease [Methanoplanus petrolearius
           DSM 11571]
          Length = 333

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 86/271 (31%), Gaps = 71/271 (26%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           VDG++    A Y      R+ DG P         + ++G F  +   L  N +       
Sbjct: 27  VDGNN----ALYQFLTTIRQPDGTPLMDREGRVTSHLSGIFFRITTFLENNIKP------ 76

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLV---------------------- 98
              IFD     F++E     +  R  + E    Q   V                      
Sbjct: 77  -VFIFDGAPPEFKSETLEQ-RRERKAVAETAYRQAVEVGDTVSAFRHARAATRVDETIIA 134

Query: 99  --RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
             +      GIP I        +  A Y  +    G     IS D D +   +P      
Sbjct: 135 GTKELLGYMGIPCI--DAMSEGEAQAAYMAM---NGDVRYSISQDYDSLLFGAPRLVRNL 189

Query: 157 TVKEEK--------IDIEHVI-----KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
           TV  ++        ++ E ++        GI  E+++ +  L G   D   G+ G+G KT
Sbjct: 190 TVSRKRKVRGRVITVNPEEILLSDLLDGKGITREELIEIGILVG--TDFNSGVKGVGAKT 247

Query: 204 AALLLQE---YGNLENILINASRIKQKKRRE 231
           A  +++    Y   E    N         +E
Sbjct: 248 ALKIVKSGKFYETFE---ENEPEFDPAPVKE 275


>gi|195401414|ref|XP_002059308.1| GJ18283 [Drosophila virilis]
 gi|194142314|gb|EDW58720.1| GJ18283 [Drosophila virilis]
          Length = 1176

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 115/295 (38%), Gaps = 38/295 (12%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY- 452
            +T+ +         IAIS   +  +   K E   I++     +           ++S  
Sbjct: 710 FVTEALLDLAKDESNIAISLDCEGINLGIKGEITLIEIGTARGEAFLFDVQSCPAMVSDG 769

Query: 453 -LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVL---DSGRSSH---- 503
            LK   E++  +K+ H+ + D + L+ ++GI +R   D      +L   ++G+  +    
Sbjct: 770 GLKTLLEHDQVIKVIHDCRNDAVNLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKY 829

Query: 504 -DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL- 555
             + S+ +++      +    K+I +  +       ++   +  +A  +  V++   L  
Sbjct: 830 ISLNSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMML-YAAGDVLVLIHDQLFG 888

Query: 556 -LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEE 611
            L  ++  E    ++   +     ++ Q++   ++I +   ++VS E   + + L    +
Sbjct: 889 SLAQQIKPEN-RQLFS--ELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLTQTSK 944

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           +I         + S +++   L   +      K +   +   A+ LE++    NP
Sbjct: 945 SI---------VLSNREI--RLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNP 988


>gi|268537368|ref|XP_002633820.1| Hypothetical protein CBG19850 [Caenorhabditis briggsae]
          Length = 574

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 395 ITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +   ++    K + + + +     D   F    +    S     D    + +  E  S  
Sbjct: 306 LWQDINNMEKKVVGLDLKTVTVGVDGEIFLSLGVIATTSQIGIFDLASSDVIILE--SGF 363

Query: 454 KKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLD 497
           K   E+E  +K+ H+ +    +L H+Y + MR   D  +   +L 
Sbjct: 364 KGILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQVAHSLLQ 408


>gi|15831767|ref|NP_310540.1| ribonuclease D [Escherichia coli O157:H7 str. Sakai]
 gi|157156075|ref|YP_001463104.1| ribonuclease D [Escherichia coli E24377A]
 gi|187776027|ref|ZP_02799888.2| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
 gi|188024852|ref|ZP_02774388.2| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
 gi|189010430|ref|ZP_02807242.2| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
 gi|189402540|ref|ZP_02783120.2| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
 gi|189403490|ref|ZP_02795783.2| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
 gi|189404421|ref|ZP_02789258.2| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
 gi|189405084|ref|ZP_02813223.2| ribonuclease D [Escherichia coli O157:H7 str. EC869]
 gi|189406051|ref|ZP_02826040.2| ribonuclease D [Escherichia coli O157:H7 str. EC508]
 gi|191168835|ref|ZP_03030609.1| ribonuclease D [Escherichia coli B7A]
 gi|193066361|ref|ZP_03047410.1| ribonuclease D [Escherichia coli E22]
 gi|193071290|ref|ZP_03052209.1| ribonuclease D [Escherichia coli E110019]
 gi|194430003|ref|ZP_03062510.1| ribonuclease D [Escherichia coli B171]
 gi|208810493|ref|ZP_03252369.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
 gi|208816683|ref|ZP_03257803.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
 gi|208818758|ref|ZP_03259078.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
 gi|209396542|ref|YP_002270881.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
 gi|209919169|ref|YP_002293253.1| ribonuclease D [Escherichia coli SE11]
 gi|217328853|ref|ZP_03444934.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
 gi|218554376|ref|YP_002387289.1| ribonuclease D [Escherichia coli IAI1]
 gi|218695366|ref|YP_002403033.1| ribonuclease D [Escherichia coli 55989]
 gi|218705302|ref|YP_002412821.1| ribonuclease D [Escherichia coli UMN026]
 gi|254793426|ref|YP_003078263.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
 gi|260844148|ref|YP_003221926.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
 gi|291282984|ref|YP_003499802.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
 gi|293446176|ref|ZP_06662598.1| ribonuclease D [Escherichia coli B088]
 gi|332279045|ref|ZP_08391458.1| ribonuclease D [Shigella sp. D9]
 gi|13361980|dbj|BAB35936.1| RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
           Sakai]
 gi|157078105|gb|ABV17813.1| ribonuclease D [Escherichia coli E24377A]
 gi|187769404|gb|EDU33248.1| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
 gi|188016291|gb|EDU54413.1| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
 gi|189000217|gb|EDU69203.1| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
 gi|189355025|gb|EDU73444.1| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
 gi|189360343|gb|EDU78762.1| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
 gi|189365729|gb|EDU84145.1| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
 gi|189371954|gb|EDU90370.1| ribonuclease D [Escherichia coli O157:H7 str. EC869]
 gi|189376734|gb|EDU95150.1| ribonuclease D [Escherichia coli O157:H7 str. EC508]
 gi|190901115|gb|EDV60890.1| ribonuclease D [Escherichia coli B7A]
 gi|192926009|gb|EDV80654.1| ribonuclease D [Escherichia coli E22]
 gi|192955385|gb|EDV85869.1| ribonuclease D [Escherichia coli E110019]
 gi|194411930|gb|EDX28245.1| ribonuclease D [Escherichia coli B171]
 gi|208725009|gb|EDZ74716.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
 gi|208731026|gb|EDZ79715.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
 gi|208738881|gb|EDZ86563.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
 gi|209157942|gb|ACI35375.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
 gi|209768038|gb|ACI82331.1| RNase D [Escherichia coli]
 gi|209768040|gb|ACI82332.1| RNase D [Escherichia coli]
 gi|209768042|gb|ACI82333.1| RNase D [Escherichia coli]
 gi|209768044|gb|ACI82334.1| RNase D [Escherichia coli]
 gi|209768046|gb|ACI82335.1| RNase D [Escherichia coli]
 gi|209912428|dbj|BAG77502.1| ribonuclease D [Escherichia coli SE11]
 gi|217318200|gb|EEC26627.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
 gi|218352098|emb|CAU97835.1| ribonuclease D [Escherichia coli 55989]
 gi|218361144|emb|CAQ98727.1| ribonuclease D [Escherichia coli IAI1]
 gi|218432399|emb|CAR13290.1| ribonuclease D [Escherichia coli UMN026]
 gi|254592826|gb|ACT72187.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
 gi|257759295|dbj|BAI30792.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
 gi|290762857|gb|ADD56818.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
 gi|291323006|gb|EFE62434.1| ribonuclease D [Escherichia coli B088]
 gi|332101397|gb|EGJ04743.1| ribonuclease D [Shigella sp. D9]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|326474338|gb|EGD98347.1| hypothetical protein TESG_05726 [Trichophyton tonsurans CBS 112818]
          Length = 778

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 46/261 (17%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
             +FD P         PDYK  R         Q+ L R   + F  P     G EA+   
Sbjct: 75  IFVFDGPHR-------PDYKRGRLVSKNAAAAQIELSRKLIELFSYPCHMAPG-EAE--- 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--------EKIDIEHVIKKWG 173
                  ++ G    ++S D D + +      L +  K           +D+ +   + G
Sbjct: 124 -AECAKLQQAGVVDAVMSNDVDAL-MFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDG 181

Query: 174 -----IPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL-QEYGNLENILINASRI-- 224
                +  + MV +  L+G   D  P G+   G K A  +    +G  E++      +  
Sbjct: 182 DSKVTLDTKGMVLVALLSG--GDYSPAGVALCGPKLAVEIARAGFG--EDLFEITQDLLS 237

Query: 225 --KQKKRRENILEYAETARLSRKL--------VMLRTDVPITIPLEHLILEDCNGPRLIS 274
               KK  E + E+ E  RL  +L              V I     +L         + S
Sbjct: 238 GRSTKKTEEALCEWRE--RLQYELQSNESGYFKTKHKAVKIPADFPNLAALRSCVDPVTS 295

Query: 275 FLKALEFTKLINRVATTYDCD 295
            LK ++  + ++      D D
Sbjct: 296 SLKDMDTLRRLDIWGRRVDVD 316


>gi|157161268|ref|YP_001458586.1| ribonuclease D [Escherichia coli HS]
 gi|188495947|ref|ZP_03003217.1| ribonuclease D [Escherichia coli 53638]
 gi|194439630|ref|ZP_03071702.1| ribonuclease D [Escherichia coli 101-1]
 gi|254161863|ref|YP_003044971.1| ribonuclease D [Escherichia coli B str. REL606]
 gi|157066948|gb|ABV06203.1| ribonuclease D [Escherichia coli HS]
 gi|188491146|gb|EDU66249.1| ribonuclease D [Escherichia coli 53638]
 gi|194421451|gb|EDX37466.1| ribonuclease D [Escherichia coli 101-1]
 gi|242377525|emb|CAQ32279.1| RNase D [Escherichia coli BL21(DE3)]
 gi|253973764|gb|ACT39435.1| ribonuclease D [Escherichia coli B str. REL606]
 gi|253977958|gb|ACT43628.1| ribonuclease D [Escherichia coli BL21(DE3)]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|58697529|ref|ZP_00372780.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
 gi|58535998|gb|EAL59702.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
          Length = 284

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 4/139 (2%)

Query: 443 NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGR 500
           + L  EI LS++KK   N+   K+ H+ + D   +L  +        D  + +       
Sbjct: 56  DALVPEIDLSFIKKIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYH 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
                + + +++      +I    K+S  + +       ++A+ +   +  L+ +L  KL
Sbjct: 116 DFIGYSKVVEQYQGIALDKI--KAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKL 173

Query: 561 IVEKLLHVYERLDKPMIDV 579
                +  ++   + ++D+
Sbjct: 174 EENNRMGWFQEEMESIVDI 192


>gi|313896094|ref|ZP_07829648.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529365|ref|ZP_08030453.1| exonuclease [Selenomonas artemidis F0399]
 gi|312975519|gb|EFR40980.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138331|gb|EFW30225.1| exonuclease [Selenomonas artemidis F0399]
          Length = 179

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 17/113 (15%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T     F S    + ++ +D    T   V+ ++  +S     D+   N ++  +++
Sbjct: 8   FDTETTG---FRSDDEVLTLAVVDGAGKT--VVDGMYAPVSKKEWPDAEKVNRISPAMVA 62

Query: 452 ----------YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF--EDIMLM 492
                      L++ F +   L +G+NI++D  +L + GI +      D+ML 
Sbjct: 63  DCAPILTHRAELERLFNDPETLLVGYNIEFDIRLLGQSGIRITNPNRHDVMLA 115


>gi|240169372|ref|ZP_04748031.1| hypothetical protein MkanA1_08668 [Mycobacterium kansasii ATCC
           12478]
          Length = 1746

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 17/153 (11%)

Query: 373 NTKDIQQW-----VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           +T     W     +++      A   I T  +D+       +A+  LD    T      +
Sbjct: 83  DTHHDTDWYRPTKLRRAAADRIAVLDIETTGLDSAADFVCELALVGLDG---TPLANIMV 139

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI-----KYDKLVLHRYGIS 482
            +   V    +S G      + L  L+     E  L IGHN+      + +    R G+ 
Sbjct: 140 QLPAGVARPNESFGAEFPLDDALRLLEAHLA-EIDLVIGHNLLEFDRPFLEKAAQRAGVD 198

Query: 483 ---MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
              +    D + ++ ++D    +  +A +  ++
Sbjct: 199 PPHLPSCVDSLHLATLVDVAMPNRSLADLTHQF 231


>gi|221485391|gb|EEE23672.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii GT1]
          Length = 1353

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 88/277 (31%), Gaps = 29/277 (10%)

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
              +   DA   +   L  +   + G      +      +    +        ++     
Sbjct: 382 FPLSGSGDAGACDSTGLSPSARMSNGGEETEPLPHVYEAELLALTWTGPNGEAVDGVYGG 441

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE--TIGSASFKIITDTMDAFHSK 405
             LF     +  +   +     +I   +++Q+ V +L        +  +   +  ++   
Sbjct: 442 PDLFTVSKPRRWKPLKDTPL-VRIAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGF 500

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + +ST +                     +D         + L  L     N   LKI
Sbjct: 501 TCLLQLSTRE---------------------KDYIIDPFALFDHLHVLNTITANPKILKI 539

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D + L R + + +    D  + +  L    +    AS+A    +Y   E  K  
Sbjct: 540 FHGADSDIIWLQRDFSVYVVNMFDTCVAARAL----AVPGGASLANLLQTYCHVEANKQY 595

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           + +    +    +++ +A  +++ +  ++ +++ +L+
Sbjct: 596 QLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLL 632


>gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 729

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 21/163 (12%)

Query: 367 SYTKIVNTKDIQQWVQK-LETIGSASFKIITDTMDAFHSKPIAIAIS--------TLDQK 417
            ++ I    D    + + L+ +    F   T  +       I ++I+         LD +
Sbjct: 513 DFSLIDQAADQGALLDRPLDALNYVVFDTETTGLSPAEGDEI-VSIAGVRMVNGRLLDGE 571

Query: 418 DDTSFKVETIFID----LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                      I     L       +       + +L     F  +   + + HN  +D 
Sbjct: 572 RFEQLVNPGRTIPRSSILFHGIHDTTVADKPRIETVLPRFHTFVGD--SVLVAHNAAFDM 629

Query: 474 LVLH----RYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511
             +     R G+       D +L+S  L    + H + +IA +
Sbjct: 630 KFIRLKERRCGVRFDNPVLDTLLLSVFLHDHTADHTLEAIAAR 672


>gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
 gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
          Length = 1462

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D+      L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDMA-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +      +L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKSL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
 gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
          Length = 1463

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F +N   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKN--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|292617367|ref|XP_697980.4| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Danio
           rerio]
          Length = 1361

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 453 LKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDS---GRSSHDIASI 508
           LK F E+E+ +K+G  I+ D   +L  Y I ++   D   +S + +          +  +
Sbjct: 112 LKMFLEDENIMKVGVGIEGDKWKLLSDYDIKLKNIVD---LSDLANEKLRCCEKWSLDGL 168

Query: 509 AQKWLSYTRKEILKSR--KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            +  L   +K++ K +  + S   D       + +A  ++   L ++  L+  +
Sbjct: 169 VKHLL---KKQLFKDKLVRCSHWDDFSLTEDQKRYAATDAYAGLLIYQKLQEMI 219


>gi|34581576|ref|ZP_00143056.1| ribonuclease D [Rickettsia sibirica 246]
 gi|28262961|gb|EAA26465.1| ribonuclease D [Rickettsia sibirica 246]
          Length = 281

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 76/212 (35%), Gaps = 27/212 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N K ++++  +L      S     +    ++++      S +  K +    +    
Sbjct: 2   QIIDNQKTLEEFCNRLANKACLSIDTEFERRYTYYAQL-----SIIQVKAEEYCGI---- 52

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFE 487
                         + L+   L+   K   + +  KI H  + D  + +    ++     
Sbjct: 53  -------------IDALSNLDLNIFNKLLADNNITKIFHAPREDLEIFYNLFKTLPANVF 99

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + + +   G+       +  K +  T   I K+ + S  + +   S +  +A+ +  
Sbjct: 100 DIQIAANICGFGKQL-SYDDLCYKLIGIT---IDKTHQKSNWLKRPITSDMLNYAMLDVE 155

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            + +++  +   ++   L + Y+     ++DV
Sbjct: 156 YLYKIYKEINNIIVRNNLTNKYQTTLSALLDV 187


>gi|281178870|dbj|BAI55200.1| ribonuclease D [Escherichia coli SE15]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|229496277|ref|ZP_04389997.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316855|gb|EEN82768.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 30/219 (13%)

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF- 402
           E   + +  E +  LS           +   ++ +    +LE      F   +       
Sbjct: 2   ESLQEHITKEEIATLSHTAFFPGQIHLVETAEEAEAIFDQLERQSVVGFDTESKPCFTRG 61

Query: 403 -HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             ++   I ISTL+                      D+        +    LK F  N +
Sbjct: 62  ETAEVALIQISTLE----------------------DAYLIRVNKTDFTPRLKAFLANPN 99

Query: 462 FLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
            LK+G +++ D  V+  R  +   GF    +    L       D A +   +     + I
Sbjct: 100 ILKVGLSLRDDYKVMRRRAEVQPEGF----IELQSLCPAYGIRD-AGLQNIYAIIFGERI 154

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
            KS++ +         + Q +A  ++   L+++  L  +
Sbjct: 155 SKSQRVTNWESPTLSFKQQLYAALDAYACLRIYNALMER 193


>gi|82776970|ref|YP_403319.1| ribonuclease D [Shigella dysenteriae Sd197]
 gi|81241118|gb|ABB61828.1| RNase D [Shigella dysenteriae Sd197]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 59/221 (26%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   HYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|26248062|ref|NP_754102.1| ribonuclease D [Escherichia coli CFT073]
 gi|91211019|ref|YP_541005.1| ribonuclease D [Escherichia coli UTI89]
 gi|215487015|ref|YP_002329446.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69]
 gi|218558666|ref|YP_002391579.1| ribonuclease D [Escherichia coli S88]
 gi|218689740|ref|YP_002397952.1| ribonuclease D [Escherichia coli ED1a]
 gi|26108465|gb|AAN80667.1|AE016761_242 Ribonuclease D [Escherichia coli CFT073]
 gi|91072593|gb|ABE07474.1| ribonuclease D [Escherichia coli UTI89]
 gi|215265087|emb|CAS09475.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69]
 gi|218365435|emb|CAR03162.1| ribonuclease D [Escherichia coli S88]
 gi|218427304|emb|CAR08103.1| ribonuclease D [Escherichia coli ED1a]
 gi|294489955|gb|ADE88711.1| ribonuclease D [Escherichia coli IHE3034]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|167646508|ref|YP_001684171.1| ribonuclease D [Caulobacter sp. K31]
 gi|167348938|gb|ABZ71673.1| ribonuclease D [Caulobacter sp. K31]
          Length = 389

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 59/198 (29%), Gaps = 26/198 (13%)

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS 439
           +  +L+     +          +  K   I +++ D        +E     L+       
Sbjct: 13  FCNELKGQPFIAVDTEFMRETTYWPKLCLIQVASPD--------IEACIDPLAEGMD--- 61

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSG 499
                     L  L +   +   LK+ H  + D  + +          D  +       G
Sbjct: 62  ----------LEPLLEILRDPGVLKVFHAARQDVEIFNNLNAMPTPLFDTQVAGMAAGFG 111

Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
                  ++ ++ L     E+ KS + +    +        +A+ +   +  L+ +LR +
Sbjct: 112 EQI-AYDALVRQMLKI---ELDKSSRFTDWARRPLSDAQLTYAVADVTHLATLFPILRER 167

Query: 560 LIVEKLLHVYERLDKPMI 577
           L     L   E  +   +
Sbjct: 168 LEKAGRLAWVEE-EMKAL 184


>gi|92117640|ref|YP_577369.1| ribonuclease D [Nitrobacter hamburgensis X14]
 gi|91800534|gb|ABE62909.1| ribonuclease D [Nitrobacter hamburgensis X14]
          Length = 396

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 67/205 (32%), Gaps = 44/205 (21%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T ++     +L      +                              F  ET + 
Sbjct: 17  LITTTAELASVCARLANYPVVTVDTE--------------------------FLRETTYY 50

Query: 430 DLSVHTSQDSTGKNTLTKEILSY---LKKFFE---NEHFLKIGHNIKYDK-LVLHRYGIS 482
            L +   Q ++    +  + L+    LK FF+   NE  LK+ H  + D  +V H+ GI 
Sbjct: 51  PL-LCVVQMASPDEAVVVDALAEGIDLKPFFDLMSNERVLKVFHAARQDIEIVWHQAGII 109

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKISDSQVQ 539
                D  + + VL  G S     ++ ++   +   +        +  +  D++      
Sbjct: 110 PHPIFDTQVAAMVLGYGDSI-AYDALVERVNGHRPDKTHRFTDWSRRPLTKDQL------ 162

Query: 540 EHAIENSNVILQLWLLLRPKLIVEK 564
           E+A+ +   +  ++  L   L    
Sbjct: 163 EYAVADVTHLRDVFAALDADLKKRG 187


>gi|238788499|ref|ZP_04632292.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641]
 gi|238723412|gb|EEQ15059.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641]
          Length = 394

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 60/195 (30%), Gaps = 29/195 (14%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +  +Y  I     +QQ  +        +          ++ +   I +   +Q       
Sbjct: 20  DVLNYQLITTDSALQQVCELARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPL 79

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
             T +                         ++  ++ + +K  H    D  V    +G+ 
Sbjct: 80  PITEWQP----------------------FRELLQDLNVVKYLHAGSEDLEVFLNAFGLM 117

Query: 483 MRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
                D  +++    SGR+ S   A +  ++      E+ KS   +  I +    +  ++
Sbjct: 118 PTPMIDTQVLA--AFSGRTLSCGFAMLVNEFEGV---ELDKSESRTDWIARPLSEKQCDY 172

Query: 542 AIENSNVILQLWLLL 556
           A  +   +L L   L
Sbjct: 173 AAADVFYLLPLATKL 187


>gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355]
          Length = 1462

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSVFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCKD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|330980421|gb|EGH78524.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 607

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDSAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|37526051|ref|NP_929395.1| ribonuclease D [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785481|emb|CAE14428.1| Ribonuclease D (RNase D) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +QQ  +  +     +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITTDAQLQQVCEGAKKYSKVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLNIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         ++   +   LK+ H    D  V    +      
Sbjct: 62  NWQP----------------------FRELITHPQILKLLHAGSEDLEVFLNAFQCLPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L +++      S   A++  +++     E+ KS   +  + +    +  E+A  
Sbjct: 100 MIDTQVLAAFIGHP--LSCGFAALVAEYIHV---ELDKSESRTDWLARPLSEKQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L L  +L
Sbjct: 155 DVYYLLPLADIL 166


>gi|240103256|ref|YP_002959565.1| flap endonuclease-1 [Thermococcus gammatolerans EJ3]
 gi|259645974|sp|C5A639|FEN_THEGJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|239910810|gb|ACS33701.1| Flap structure-specific endonuclease (fen) [Thermococcus
           gammatolerans EJ3]
          Length = 339

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 101/318 (31%), Gaps = 90/318 (28%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKESIASHF 61
           +D  +    A Y      R+ DG P         + ++GF    ++ +         ++ 
Sbjct: 26  IDAFN----AMYQFLSTIRQRDGTPLMDSKGRITSHLSGFF---YRTINLMEAGIKPAY- 77

Query: 62  AVIFDYPAVTFRNEIY--------------------------PDYKANRPKIPEMLLPQL 95
             +FD     F+ +                              Y     K+ E L+   
Sbjct: 78  --VFDGEPPAFKKKELEKRREAREEAEEKWHEALERGEIEEAKKYAMRATKLNETLIEDA 135

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCL 154
              +      G+P ++       +  A   Y+A K+   V    S D D +   +P    
Sbjct: 136 ---KKLLGLMGVPVVQAP----SEGEAQAAYMAAKK--RVYASASQDYDSLLFGAPRLVR 186

Query: 155 YDT---------------VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPG 198
             T               VK E I +E V+++ GI  EK++ L  L G   D  P GI G
Sbjct: 187 NLTITGRRKLPGKNVYVEVKPELIVLEEVLRELGIDREKLIELAILVG--TDYNPGGIKG 244

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258
           IG K A  +++   +        S +     +E                    + P+T  
Sbjct: 245 IGPKKALTIVKRSKDPLKKYQKDSDVDLYAIKE-----------------FFLNPPVTDD 287

Query: 259 LEHLILEDCNGPRLISFL 276
            E L   + +   ++ FL
Sbjct: 288 YE-LKWREPDEEGILKFL 304


>gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056]
          Length = 866

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D++     L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDME-----LSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|302189905|ref|ZP_07266578.1| excinuclease ABC subunit C [Pseudomonas syringae pv. syringae 642]
          Length = 607

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDSAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1464

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAIS------TLDQKDDTSFKVET--IFIDLSVH 434
           +L       F + T  + A ++  I IA S       ++Q D+          F      
Sbjct: 420 ELNEATFVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQFDEFINPGHHLSAFTTELTG 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
            + +        +E+L   + F ++   + + HN  +D   ++    R+G+ +  +   D
Sbjct: 480 ITDNHVRNAKPIEEVLQMFQDFCQD--TVLVAHNATFDVGFMNANYERHGMPIITQPVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 538 TLEFARNLYPEYKRHGLGPLTKRF 561


>gi|167600455|ref|YP_001671954.1| hypothetical protein PPLUZ19_gp12 [Pseudomonas phage LUZ19]
 gi|161168318|emb|CAP45482.1| hypothetical protein [Pseudomonas phage LUZ19]
          Length = 269

 Score = 44.3 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810
            D++  +A+ +F V   +V+P+MRR AK+  F+  Y
Sbjct: 4   KDLYTNLASGMFNVPCSQVTPEMRRVAKSRAFAHAY 39


>gi|260768989|ref|ZP_05877923.1| ribonuclease D [Vibrio furnissii CIP 102972]
 gi|260617019|gb|EEX42204.1| ribonuclease D [Vibrio furnissii CIP 102972]
          Length = 397

 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 112/343 (32%), Gaps = 55/343 (16%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I    D+++                      F+ +   I +               
Sbjct: 28  NYQIIDQLNDLERVCSLARDADVVMLDTEFVRTRTFYPQLGLIQL--------------- 72

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRG 485
                     ++ +  + L  + ++   +  ++   LK+ H    D  V    +G     
Sbjct: 73  -------FDGENLSLIDPLAMDEMTPFVELLQDTSVLKVLHACGEDIEVFKTSFGCVPFP 125

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +M+  L  G S+   A++A   L+    E+ KS   +  + +    +  E+A  +
Sbjct: 126 MVDTQIMAAFLGYGLST-GFAALAHDLLNV---ELDKSESRTDWLARPLSQKQLEYAAAD 181

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYE-----RLDKPMIDVVSQMEITGIQ----IDQDLL- 595
              ++ ++  L  K+         +     +++K       +M    I+    +    L 
Sbjct: 182 VFYLMPMYEQLLEKVTQAGWWEAAQQESELQVEKRTRTTDPEMVYLDIKGAWQLKPKELA 241

Query: 596 -----------KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
                      + ++ +++ N +  E ++  ++  +  L SPK++ +    +   P   +
Sbjct: 242 ILKPLATWRYQEAMNRDLALNFVIRENDLLTIA--RLALRSPKRMEE----EGIDPHAIR 295

Query: 645 TKTGQWKTTAQDLEQINCGDNPI-IKNILEWRQLSKIKSTYAD 686
             + +     +   Q      P  I  ++++    ++     D
Sbjct: 296 RHSTKMINIVKAALQTPAEHYPEKIVPLMDYPGYKQLFKKLKD 338


>gi|66394984|ref|YP_240953.1| ORF035 [Staphylococcus phage G1]
 gi|62637006|gb|AAX92117.1| ORF035 [Staphylococcus phage G1]
 gi|182627947|gb|ACB89109.1| gp ORF116 [Staphylococcus phage A5W]
          Length = 290

 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 91/278 (32%), Gaps = 40/278 (14%)

Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH------------LILEDC 267
           N       K  + +LE     +  +       D  I                  +  +D 
Sbjct: 26  NVLNTPNGKTLKKLLEKCSNLKRDK----TNRDYDIDFLYNAVPTPIRNDYGKIIKYQDV 81

Query: 268 NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI- 326
               +  + + +    + N            ++ ++      + +G+  +  I+  T+  
Sbjct: 82  KQAEVKPYYERMNNIIIDNSYDMVIPVGKLGVKYLLNVTAIGKVRGVPSKVTIENGTSSH 141

Query: 327 KTSQFSSLSDQTSKINSEQTP------QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW 380
                 + S + + +N           Q +     Q    +     SY  + N + +++ 
Sbjct: 142 DVWVLPTYSIEYTNVNKNSERHVVSDLQTVGKFVEQGEEAFKPKEVSYELVDNIERVREI 201

Query: 381 VQK------LETIGSASFKIITDTM--DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
             K       + +   ++ + T+++  D   SKP+ +++S  + +  T   +     D +
Sbjct: 202 FNKEVKNDNYDGVDITAWDLETNSLKPDKEGSKPLVLSLSWRNGQGVT---IPLYKSDFN 258

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
               QD         E+L  LK +  ++  +K+ HN K
Sbjct: 259 WENGQD------DIDEVLELLKNWLASKEDIKVAHNGK 290


>gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
 gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
          Length = 1464

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAIS------TLDQKDDTSFKVET--IFIDLSVH 434
           +L       F + T  + A ++  I IA S       ++Q D+          F      
Sbjct: 420 ELNEATYVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQFDEFINPGHHLSAFTTELTG 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
            + +        +E+L   + F ++   + + HN  +D   ++    R+G+ +  +   D
Sbjct: 480 ITDNHVRNAKPIEEVLQMFQNFCQD--TVLVAHNATFDVGFMNANYERHGMPIITQPVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 538 TLEFARNLYPEYKRHGLGPLTKRF 561


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 86/271 (31%), Gaps = 30/271 (11%)

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
           A +  ++ +        +      + L  N +        TE          +  +++D 
Sbjct: 325 AYDLNEIKHESRKDTAPENEKRVELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDH 384

Query: 338 TS--KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395
            +           +    ++    +  I +D      N +      + L       F   
Sbjct: 385 GTLQAFPEAHAAGQKNNVKILYGVEANIVDDGVPIAYNEQH-----KNLRDATYVIFDTE 439

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ----------DSTGKNTL 445
           T  + A + K   I ++ +  +          FID     SQ          D    +  
Sbjct: 440 TTGLSAQYDKV--IELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLTSITDDMVRGSKS 497

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFEDIMLMSYVLDSG 499
            +E+    K+F ++   + +GHN  +D   ++    R+ + M    + D + ++  L   
Sbjct: 498 EEEVFRLFKEFCKD--CIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDTLPLARYLYPE 555

Query: 500 RSSHDIASIAQKW---LSYTRKEILKSRKSS 527
                + ++A+K    L +  + I  +  + 
Sbjct: 556 MKGFRLNTLAKKLNIKLEHHHRAIYDAEATG 586


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 70/221 (31%), Gaps = 27/221 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           L       F + T  + A ++  I + A+   D +    F         LS+        
Sbjct: 415 LSEDTYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFTSFANPHHPLSITTIELTGI 474

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDI 489
           + D        +E+L     +  +   + + HN  +D   L+        G       D 
Sbjct: 475 TDDMLKDAPDVEEVLRQFYDWMGD--SILVAHNASFDIGFLNVGFTKLGLGKVTNPVIDT 532

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + ++  L     +H + ++ +K+      E+ +          I D++   + +      
Sbjct: 533 LELARFLYPELKNHRLNTLCKKF----DIELTQ------HHRAIYDAEATGYLLMRLLKD 582

Query: 550 LQLWLLLR-PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            Q   +L   +L       V  +  +P    +      G++
Sbjct: 583 AQERGILYHDELNERSKEEVSYQRSRPFHVTLLAQNDIGLK 623


>gi|221506253|gb|EEE31888.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii VEG]
          Length = 1353

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 87/277 (31%), Gaps = 29/277 (10%)

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
                  DA   +   L  +   + G      +      +    +        ++     
Sbjct: 382 FPLAGSGDAGACDSTGLSPSARMSNGGEETEPLPHVYEAELLALTWTGPNGEAVDGVYGG 441

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE--TIGSASFKIITDTMDAFHSK 405
             LF     +  +   +     +I   +++Q+ V +L        +  +   +  ++   
Sbjct: 442 PDLFTVSKPRRWKPLKDTPL-VRIAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGF 500

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + +ST +                     +D         + L  L     N   LKI
Sbjct: 501 TCLLQLSTRE---------------------KDYIIDPFALFDHLHVLNTITANPKILKI 539

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D + L R + + +    D  + +  L    +    AS+A    +Y   E  K  
Sbjct: 540 FHGADSDIIWLQRDFSVYVVNMFDTCVAARAL----AVPGGASLANLLQTYCHVEANKQY 595

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           + +    +    +++ +A  +++ +  ++ +++ +L+
Sbjct: 596 QLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLL 632


>gi|237835553|ref|XP_002367074.1| exosome component 10, putative [Toxoplasma gondii ME49]
 gi|211964738|gb|EEA99933.1| exosome component 10, putative [Toxoplasma gondii ME49]
          Length = 1353

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 87/277 (31%), Gaps = 29/277 (10%)

Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347
                  DA   +   L  +   + G      +      +    +        ++     
Sbjct: 382 FPLAGSGDAGACDSTGLSPSARMSNGGEETEPLPHVYEAELLALTWTGPNGEAVDGVYGG 441

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE--TIGSASFKIITDTMDAFHSK 405
             LF     +  +   +     +I   +++Q+ V +L        +  +   +  ++   
Sbjct: 442 PDLFTVSKPRRWKPLKDTPL-VRIAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGF 500

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + +ST +                     +D         + L  L     N   LKI
Sbjct: 501 TCLLQLSTRE---------------------KDYIIDPFALFDHLHVLNTITANPKILKI 539

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D + L R + + +    D  + +  L    +    AS+A    +Y   E  K  
Sbjct: 540 FHGADSDIIWLQRDFSVYVVNMFDTCVAARAL----AVPGGASLANLLQTYCHVEANKQY 595

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           + +    +    +++ +A  +++ +  ++ +++ +L+
Sbjct: 596 QLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLL 632


>gi|17537597|ref|NP_496592.1| hypothetical protein Y57A10A.15 [Caenorhabditis elegans]
 gi|6433820|emb|CAB60771.1| C. elegans protein Y57A10A.15, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1072

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 48/171 (28%)

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-----------IAKITPLY 768
           L N      +G  I+    +P   +L+ AD    E  + A            + K     
Sbjct: 661 LTNQSTGHVIGTGIKAMVQAPAGYRLVGADVDSQEQWLAALYGDASAEKRLPLEKRVAGK 720

Query: 769 QVFEN---------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
             F N         + D+H +VA+++            R HAK +N++ +YG        
Sbjct: 721 TAFSNMMLAGSKSDNTDLHSVVASQL---------KISRNHAKVLNYARLYGSGETHAGK 771

Query: 820 QL-------------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            L                   ++ + + A Y+K        + +YIE+   
Sbjct: 772 HLMRVGGLKQSEAESTASQLFKLTKGDVAKYMKVDVRMNCVVDKYIEEMVE 822



 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 32/73 (43%)

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             E     +      +R+ +N  +Q SA D     ++S+    + +K+  + ++ IHDE+
Sbjct: 925 LPEGTPDSAYFDRKYKRSVMNWIVQSSAVDFLHLLLVSMQWLCDTYKIDARFVISIHDEV 984

Query: 929 VFEVPEEEITTAS 941
            +   E +    +
Sbjct: 985 RYMCKEPDAPRLA 997


>gi|7510239|pir||T31635 hypothetical protein Y57A10A.m - Caenorhabditis elegans
          Length = 1171

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 48/171 (28%)

Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH-----------IAKITPLY 768
           L N      +G  I+    +P   +L+ AD    E  + A            + K     
Sbjct: 760 LTNQSTGHVIGTGIKAMVQAPAGYRLVGADVDSQEQWLAALYGDASAEKRLPLEKRVAGK 819

Query: 769 QVFEN---------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819
             F N         + D+H +VA+++            R HAK +N++ +YG        
Sbjct: 820 TAFSNMMLAGSKSDNTDLHSVVASQL---------KISRNHAKVLNYARLYGSGETHAGK 870

Query: 820 QL-------------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851
            L                   ++ + + A Y+K        + +YIE+   
Sbjct: 871 HLMRVGGLKQSEAESTASQLFKLTKGDVAKYMKVDVRMNCVVDKYIEEMVE 921



 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 32/73 (43%)

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
              E     +      +R+ +N  +Q SA D     ++S+    + +K+  + ++ IHDE+
Sbjct: 1024 LPEGTPDSAYFDRKYKRSVMNWIVQSSAVDFLHLLLVSMQWLCDTYKIDARFVISIHDEV 1083

Query: 929  VFEVPEEEITTAS 941
             +   E +    +
Sbjct: 1084 RYMCKEPDAPRLA 1096


>gi|198423738|ref|XP_002125788.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 [Ciona
           intestinalis]
          Length = 572

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 22/188 (11%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
            ++VQ+L+      F     +  +   +P+A+             ++      L V    
Sbjct: 72  DRFVQELQYAKVIGFDCEWTS-KSGKPQPVALLQLATVSGVCLLIRLSHYRGPLPV---- 126

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVL 496
                          L+    +  ++K+G     D   +LH YGI + G  D+  ++   
Sbjct: 127 --------------RLQSILSDASYIKVGVGPMEDANKLLHDYGIVVSGCVDLRSLAVRT 172

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
              ++S  +  +AQ +L  T  +    + S+     +S  Q+ ++A  ++ +  +++ ++
Sbjct: 173 KETKNSLGLKGLAQSYLGVTMNKQKHIQCSAWDAPSLSQEQI-DYAANDALIAAKVFSVI 231

Query: 557 -RPKLIVE 563
            R KL   
Sbjct: 232 ARSKLESN 239


>gi|330942152|gb|EGH44804.1| excinuclease ABC subunit C [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 379

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 221 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 272

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 273 GFETLYLNDSAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 324

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 325 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 372


>gi|302348204|ref|YP_003815842.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
 gi|302328616|gb|ADL18811.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
          Length = 350

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 92/262 (35%), Gaps = 58/262 (22%)

Query: 4   ENHLFLVDGSSFIYRAFYAT--PLLS--RKHDGLPVNAIAG-FCNMLWKLLQNSRKESIA 58
           + ++  +DG + +Y+   A   P  +  +   G   + ++G F   +  + +  +     
Sbjct: 23  KGYVIALDGYNMLYQFLSAIRQPDGTPLKDSQGRVTSHLSGLFYRTINLVEEGLKPVY-- 80

Query: 59  SHFAVIFDYPAVT-FRNEI-------------YPDYKAN------RP---KIPEMLLPQL 95
                +FD       R EI             Y   K +      R       E+    +
Sbjct: 81  -----VFDGKPPEMKRKEIEERVARKKEAAEKYAKAKESGSIEEARKYAQATSELSSDMV 135

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL- 154
              +      GIP ++       D  A   ++A+K G A    S D D +   +P     
Sbjct: 136 SEAKRLLDYMGIPWVQAPA----DGEAQAAHLAQK-GDAWAAGSQDYDSLLFGAPRLVRN 190

Query: 155 --------------YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGI 199
                         Y  VK E ID+  ++K  GI  E+++ L  L G   D  P GI G 
Sbjct: 191 LAITGKRKLPNKDEYVEVKPEIIDLNAMLKALGITREQLILLGILVG--TDFDPDGIKGY 248

Query: 200 GYKTAALLLQEYGNLENILINA 221
           G KTA   ++   ++   L + 
Sbjct: 249 GPKTALNFVKGVKDVTKALESI 270


>gi|258621252|ref|ZP_05716286.1| ribonuclease D [Vibrio mimicus VM573]
 gi|258586640|gb|EEW11355.1| ribonuclease D [Vibrio mimicus VM573]
          Length = 373

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   +++ +  F    ++   LK+ H    D  
Sbjct: 28  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVINEMTPFVELLQDTSVLKVLHACGEDLE 87

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 88  VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 143

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPK 559
              +  E+A  +   +L ++  L  +
Sbjct: 144 LSDKQLEYAAADVFYLLPMYEKLLER 169


>gi|282880255|ref|ZP_06288971.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281305850|gb|EFA97894.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 905

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 20/151 (13%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------STLDQKDDTSFKVETIFIDL 431
           Q +V+  E      F   T  ++ F    + IA         +   +   F      I  
Sbjct: 511 QAFVECYEHEDIVVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMRTNREIPR 570

Query: 432 SVHTSQDSTGKNTLTKEILSY---LKKFFE-NEHFLKIGHNIKYDKLV----LHRY--GI 481
            +    +   +     ++ S    LK F E   +   +GHN  YD  +    L RY   I
Sbjct: 571 KLGNIDNPLIEEIQHHQLYSPSEGLKMFLEYVGNSRLLGHNADYDYHILNFNLQRYLPDI 630

Query: 482 SMRG----FEDIMLMSYVLDSGRSSHDIASI 508
            +      + D + +  +L+     + +  +
Sbjct: 631 QLEERCNMYFDSLKLIRLLEPNLKEYKLKYL 661


>gi|322705302|gb|EFY96889.1| 3'-5' exonuclease [Metarhizium anisopliae ARSEF 23]
          Length = 281

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 20/128 (15%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSY-------------VLDS 498
           LK   E+E+  K+  +I+ D   L   YGI + G  D+ +M +             + + 
Sbjct: 87  LKNILESENIPKVFFDIRNDSNALFSHYGIRVGGIRDLQVMEFATRRGPPARFITGLANC 146

Query: 499 GRSSHDI-ASIAQKWLSYTRK-----EILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
            +    +  S  Q WL    +     +  K     +  ++    ++ E++ ++  ++ +L
Sbjct: 147 IKYDCPMTESQKQSWLQMKDRAGRLYDPNKGGGYEVFNERPLRREICEYSAQDVALLPKL 206

Query: 553 WLLLRPKL 560
           W     KL
Sbjct: 207 WEAYSTKL 214


>gi|330939771|ref|XP_003305888.1| hypothetical protein PTT_18843 [Pyrenophora teres f. teres 0-1]
 gi|311316927|gb|EFQ86028.1| hypothetical protein PTT_18843 [Pyrenophora teres f. teres 0-1]
          Length = 348

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 48/140 (34%), Gaps = 27/140 (19%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK   E+    K+  +++ D   L   Y I++    D+ +M     +  + +    +   
Sbjct: 141 LKTILESPTIPKVFFDVRNDSDALFAHYKIALSCIHDLQVMELATRTVTTGNSRDFLCS- 199

Query: 512 WLSYTRKEIL------------------------KSRKSSIPIDKISDSQVQEHAIENSN 547
            LS   ++                          K    ++   +  +  VQE+ +++  
Sbjct: 200 -LSTCIRDNAALSPVDLDAWKAIKEAGNALFNPHKGGSYAVFETRPLEKDVQEYCVQDVV 258

Query: 548 VILQLWLLLRPKLIVEKLLH 567
            +  LW +   ++  ++L  
Sbjct: 259 YMPLLWSVFEKRIQKDRLYE 278


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 1444

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 86/271 (31%), Gaps = 30/271 (11%)

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
           A +  ++ +        +      + L  N +        TE          +  +++D 
Sbjct: 318 AYDLNEIKHESRKDTAPENEKRVELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDH 377

Query: 338 TS--KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395
            +           +    ++    +  I +D      N +      + L       F   
Sbjct: 378 GTLQAFPEAHAAGQKNNVKILYGVEANIVDDGVPIAYNEQH-----KNLRDATYVIFDTE 432

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ----------DSTGKNTL 445
           T  + A + K   I ++ +  +          FID     SQ          D    +  
Sbjct: 433 TTGLSAQYDKV--IELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLTSITDDMVRGSKS 490

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFEDIMLMSYVLDSG 499
            +E+    K+F ++   + +GHN  +D   ++    R+ + M    + D + ++  L   
Sbjct: 491 EEEVFRLFKEFCKD--CIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDTLPLARYLYPE 548

Query: 500 RSSHDIASIAQKW---LSYTRKEILKSRKSS 527
                + ++A+K    L +  + I  +  + 
Sbjct: 549 MKGFRLNTLAKKLNIKLEHHHRAIYDAEATG 579


>gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
 gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
          Length = 1463

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 52/145 (35%), Gaps = 16/145 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQKDDTSFKVETIFIDLSVHTSQ-- 437
           + L       F + T  + A ++  I +A S            +       LS  T++  
Sbjct: 418 KDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNIVAEFDEFINPGHPLSAFTTELT 477

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFE 487
               D        +++L   ++F ++   + + HN  +D   ++    R+G+    +   
Sbjct: 478 GITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVI 535

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D +  +  L      H +  + +++
Sbjct: 536 DTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|38681451|gb|AAB49975.2| egalitarian [Drosophila melanogaster]
          Length = 993

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 116/295 (39%), Gaps = 38/295 (12%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY- 452
            +TD +  + +K  +I +S   +  +   K E   I++     +           +++  
Sbjct: 530 FVTDIILKYAAKNESIVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDG 589

Query: 453 -LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL---DSGRSSH---- 503
            LK   E++  +K+ H+ + D   +  ++GI +R   D      +L   +SG+  +    
Sbjct: 590 GLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKY 649

Query: 504 -DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL- 555
             + S+ +++      +    K+I +  +       ++   +  +A  +  V++   L  
Sbjct: 650 ISLNSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMML-YAAGDVLVLIHDQLFG 708

Query: 556 -LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEE 611
            L  ++  E    ++   +     ++ Q++   ++I +   ++VS E   + + L    +
Sbjct: 709 NLARQIKPEN-RALFS--ELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLAQTSK 764

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           +I         + S +++   L   +      K +   +   A+ LE++    NP
Sbjct: 765 SI---------VLSNREI--RLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNP 808


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius
           CECT 5713]
          Length = 1444

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ---- 437
           + L       F   T  + A + K   I ++ +  +          FID     SQ    
Sbjct: 419 KNLRDATYVIFDTETTGLSAQYDKV--IELAAVKMEKGNVIDTFEEFIDPGHPLSQTTIN 476

Query: 438 ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RG 485
                 D    +   +E+    K+F ++   + +GHN  +D   ++    R+ + M    
Sbjct: 477 LTSITDDMVRGSKSEEEVFRLFKEFCKD--CIIVGHNATFDVDFMNTGYERHNMEMIQEP 534

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSS 527
           + D + ++  L        + ++A+K    L +  + I  +  + 
Sbjct: 535 WIDTLPLARYLYPEMKGFRLNTLAKKLNIKLEHHHRAIYDAEATG 579


>gi|15802217|ref|NP_288240.1| ribonuclease D [Escherichia coli O157:H7 EDL933]
 gi|12515844|gb|AAG56793.1|AE005403_4 RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
           EDL933]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTXDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
 gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
          Length = 1463

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LLEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|154315768|ref|XP_001557206.1| hypothetical protein BC1G_04456 [Botryotinia fuckeliana B05.10]
 gi|150846852|gb|EDN22045.1| hypothetical protein BC1G_04456 [Botryotinia fuckeliana B05.10]
          Length = 307

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 19/127 (14%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSH--DIASIA 509
           LK   E+    K+  +++ D   L+ + GI ++G  D+ LM     S        +    
Sbjct: 140 LKAILESIFIPKVIFDVRNDSDALYSHFGIKLQGVIDLQLMELATRSHSQKFLSGLGRCM 199

Query: 510 QKWLSYTRKEI----------------LKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
            + L  T +E+                 K  +  +  D+  D  + ++ +++  ++ QLW
Sbjct: 200 DQDLVQTPEELEVRSSIKKRGVQLFAPEKGGRYEVFNDRPLDPAIVDYCVQDVQLMPQLW 259

Query: 554 LLLRPKL 560
            +   KL
Sbjct: 260 DIYNAKL 266


>gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 896

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 69/203 (33%), Gaps = 30/203 (14%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS----FKVETIFIDLSV 433
            ++++         F   T  ++ F    I IA   +   +         +ET    L +
Sbjct: 503 AEFLRAYNEEEIVVFDTETTGLNVFQDDIIEIAAIRIKGGEVVGEPLDLYIETDKPILPM 562

Query: 434 HTSQDST-----GKNTLTKEILS---YLKKFFE-NEHFLKIGHNIKYDKLVLHRYGISMR 484
              +++       +   T E+LS    L++F         +GHN  YD  +L     +++
Sbjct: 563 LGDKENPMYAIYHEKMSTGELLSPSDALRRFLAYVGTSPILGHNANYDYNILDN---NLQ 619

Query: 485 GFE-DIMLMS-----------YVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPI 530
            +  D M               +L     S+ + S+ + +        + +   K+++ +
Sbjct: 620 RYCNDTMQAHDIRCFDSLKLIRLLAPSLHSYKLESLLETFQLAGVNSHQAIDDVKATVSL 679

Query: 531 DKISDSQVQEHAIENSNVILQLW 553
            ++   + +E   +    I    
Sbjct: 680 VRLCAEKAREKQAQQEAFIHHPK 702


>gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 22/139 (15%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL-TKEI 449
           F   T  +   +  + + I    L  K +T       F         D+  ++     + 
Sbjct: 6   FDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNP---ERPMDAVAESIHGLSDA 62

Query: 450 LSYLKKFFENEH---------FLKIGHNIKYDKLVLH----RYG---ISMRGFEDIMLMS 493
               K  F ++             + HN  +D   L+    + G   I M    D + ++
Sbjct: 63  FLADKPLFADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVDTLAIA 122

Query: 494 YVLDSGRSSHDIASIAQKW 512
                G   H + ++  ++
Sbjct: 123 RGKHPGA-KHTLDALCTRY 140


>gi|228471306|ref|ZP_04056112.1| 3- 5 exonuclease domain protein [Porphyromonas uenonis 60-3]
 gi|228306948|gb|EEK16046.1| 3- 5 exonuclease domain protein [Porphyromonas uenonis 60-3]
          Length = 206

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 12/186 (6%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           + KL         ++ D++    S   A+    +   D  S  V   +   SV   Q S+
Sbjct: 10  IGKLAKATFTGEIVVVDSLPQVESAVAALEQCAIIGMDTESKPVFKKYERQSVALIQLSS 69

Query: 441 GKNTLTKEILS-----YLKKFFENEHFLKIGHNIKYDKLVLHRY--GISMRGFEDIMLMS 493
                   I        L+   E E  LK+G ++  D+  L R+   +  +GF D+    
Sbjct: 70  ESCCYLFRINKIGIPPRLQGLLEREDILKVGLDLCGDRRQLRRFSPELHPQGFVDLQ--- 126

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L      HD+  + + +     ++I K  + S           Q +A  ++   L+++
Sbjct: 127 -RLTPAYGIHDLG-LQKIYAILFAEKISKRAQLSNWEAATLTPAQQSYAALDAYACLRIY 184

Query: 554 LLLRPK 559
             L  +
Sbjct: 185 HRLESE 190


>gi|194100443|ref|YP_002003816.1| gp6 [Klebsiella phage K11]
 gi|193201382|gb|ACF15860.1| gp6 [Klebsiella phage K11]
          Length = 300

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 23/168 (13%)

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
            +  +K    +   + F    V +R  +  P YK NR  + + +      +    +++  
Sbjct: 68  YKGRKKAWKNADVVLAF-TDRVNWRKLLVDPTYKENRAVVKKPVGY-FEFLEYVFESYT- 124

Query: 108 PAIEIQGFEADDIIAT-----YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK 162
             +     E DD++         Y  EK      ++S DKD    +     L+ T     
Sbjct: 125 -CVLEPQLEGDDVMGIIGSNPLVYNYEKA----VLVSCDKDFKT-IPDCDFLWCTTGNIL 178

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           +  +     W +        Q + GD  D   GIPG G  TA   L+E
Sbjct: 179 VQTQETADYWHL-------FQTIKGDITDGYGGIPGWGD-TAEDFLKE 218


>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 870

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 98/264 (37%), Gaps = 27/264 (10%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE-------TI 427
           +     + + E      F + +  +D    + I IA   L++K +   K E        +
Sbjct: 490 EKFSILINEFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPV 549

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL------HRYG 480
                VH   D      + ++    LK+F E ++  + +GHN++YD  +L      +  G
Sbjct: 550 KDSYYVHGFSDEM-LQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLG 608

Query: 481 I-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT------RKEILKSRKSSIPIDKI 533
               + F D + +      G  ++ + ++++ + +          +I+ + +  +   + 
Sbjct: 609 KPKFKTFYDTLDIYRRFYPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGELLV---RA 665

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            + +++E ++E   ++ +         I +KL  +++  +      +    + G  I   
Sbjct: 666 INEKIKETSMERMALMSKHLKAFTA--ISKKLNELFQIAESKRPYELVVCVMNGFNIKSM 723

Query: 594 LLKQVSAEISKNLLSLEENIYDLS 617
                + E    L  L     DL 
Sbjct: 724 YAGDENKEKLNRLRDLYALFRDLD 747


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ---- 437
           + L       F   T  + A + K   I ++ +  +          FID     SQ    
Sbjct: 419 KNLRDATYVIFDTETTGLSAQYDKV--IELAAVKMEKGNVIDTFEEFIDPGHPLSQTTIN 476

Query: 438 ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RG 485
                 D    +   +E+    K+F ++   + +GHN  +D   ++    R+ + M    
Sbjct: 477 LTSITDDMVRGSKSEEEVFRLFKEFCKD--CIIVGHNATFDVDFMNTGYERHNMEMIQEP 534

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSS 527
           + D + ++  L        + ++A+K    L +  + I  +  + 
Sbjct: 535 WIDTLPLARYLYPEMKGFRLNTLAKKLNIKLEHHHRAIYDAEATG 579


>gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 22/139 (15%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL-TKEI 449
           F   T  +   +  + + I    L  K +T       F         D+  ++     + 
Sbjct: 6   FDTETTGLSPINGDRLVEIGCVELINKVETGNSFHCYFNP---ERPMDAVAESIHGLSDA 62

Query: 450 LSYLKKFFENEH---------FLKIGHNIKYDKLVLH----RYG---ISMRGFEDIMLMS 493
               K  F ++             + HN  +D   L+    + G   I M    D + ++
Sbjct: 63  FLADKPLFADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVDTLAIA 122

Query: 494 YVLDSGRSSHDIASIAQKW 512
                G   H + ++  ++
Sbjct: 123 RGKHPGA-KHTLDALCTRY 140


>gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
 gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 22/143 (15%)

Query: 389 SASFKIITDTMDA-FHSKPIAIAISTLDQKDDTSFKVETIFID--------LSVH-TSQD 438
                  T  +D     + + IA   +  +  T                  L VH  S++
Sbjct: 3   YVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLSRE 62

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG-ISMRGFE-------DI 489
                   +EI S   +F E+   L   HN  +D   ++R  G I +           D 
Sbjct: 63  FLQDKPAFQEICSEFLEFIEDAEILI--HNAPFDVGFINRELGLIRLEPMHNYCLQIVDT 120

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           ++++  L  G+  +++ ++ +++
Sbjct: 121 LMLAKELHPGK-RNNLDALCERY 142


>gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1]
 gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 242

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 56/181 (30%), Gaps = 32/181 (17%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I +    L  +  T   +             D+   + ++   L+
Sbjct: 6   FDTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQGRSVHPDAQAVHGISDADLA 65

Query: 452 -------YLKKFFE-NEHFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSY-- 494
                   L +F E  +    + HN  +D         R G   I      D + ++   
Sbjct: 66  GKPVFAEILDEFLEFIDGAKLVAHNANFDIGFINAEFQRVGQPYIDPARVIDTLAIARRK 125

Query: 495 ------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
                  LD+    + I +         +  + L+    E+   +++S  ++  +    +
Sbjct: 126 HPMGPNSLDALCRRYGIDNSHRTKHGALLDAELLAEVYIELAGGKQASFGLEIATQGVAE 185

Query: 540 E 540
           E
Sbjct: 186 E 186


>gi|321452793|gb|EFX64106.1| hypothetical protein DAPPUDRAFT_66464 [Daphnia pulex]
          Length = 181

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 24/166 (14%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           + +     P+++     +  T+  +Q +Q L +       +   +  ++      + IST
Sbjct: 26  KHEIPHFLPVSSTPLIVVDTTEAFEQLLQDLLSQTVIGVDLEHHSDRSYRGITCLMQIST 85

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
                                   D         + L  L K F + + +KI      D 
Sbjct: 86  ---------------------DKTDYIIDTLKLWDHLQPLNKVFCDPNIVKIFQGADSDV 124

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
           + L R +GI +    D    + +L  G     ++ + Q +      
Sbjct: 125 IWLQRDFGIYVVNLFDTFQAASLL--GFQKKGLSFLLQHYCQVHVD 168


>gi|126643245|ref|YP_001086229.1| exonuclease putative [Acinetobacter baumannii ATCC 17978]
          Length = 186

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I N++  +   ++L+      F     +   F    +    ST       + + +     
Sbjct: 3   IENSEQCKTIEEELKAATFLGFDSE--SKPTFQVGEV----STGPHLIQLATEHKAYLFH 56

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
           ++  T              L +L+    N   +K+G  +K DK + H+ GI +    D
Sbjct: 57  VNSST--------------LKFLQPILSNPKQIKVGFGLKNDKHIFHKKGIKLESCID 100


>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1536

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 64/194 (32%), Gaps = 37/194 (19%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--------SQDST 440
              F I T  +     K I I    ++  +  S   E I  ++ +          +    
Sbjct: 502 YVVFDIETTGLSNLTCKIIEIGAVRVEHGEVVSRFSEFINPEVPIPFKITELTSITDAMV 561

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIMLMSY 494
               + +EIL   ++F  +   + + HN  +D   +       +       + D + M+ 
Sbjct: 562 EDAPVIEEILPKFREFCGDA--VLVAHNADFDTGFIKMECERQKLDWEFT-YVDTVAMAQ 618

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +L  G S   + ++A              +   +P++          A++++     +++
Sbjct: 619 MLLPGLSRFKLDTVA--------------KAVGVPLEH------HHRAVDDAECTAWIFV 658

Query: 555 LLRPKLIVEKLLHV 568
                L    +L +
Sbjct: 659 KFVEMLKERNILDL 672


>gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1]
 gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 20/138 (14%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
           F   T  ++     + + I    L  + +T       F      +      +     E  
Sbjct: 6   FDTETTGLNPATGDRLVEIGCVELVNRVETGNSFHCYFNP--QRSMPFEAEQVHGLSERF 63

Query: 451 SYLKKFFENE---------HFLKIGHNIKYDKLVLHR-YG------ISMRGFEDIMLMSY 494
              K  F ++             + HN  +D   L+   G      + M    D + ++ 
Sbjct: 64  LSDKPLFADKVEELLAFIGDAPLVAHNASFDFGFLNWELGACGRSIVDMGRMVDTLQIAR 123

Query: 495 VLDSGRSSHDIASIAQKW 512
            +  G   H + ++  ++
Sbjct: 124 KMHPGA-KHSLDALCSRY 140


>gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46]
          Length = 330

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 95/298 (31%), Gaps = 54/298 (18%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 59  ETFKIALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMV-----NSMRIGLPASL 113

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIP-IDKISDSQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P  D     Q  ++ I + 
Sbjct: 114 DKVGEVLRLQNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDV 173

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL---KQVSAEIS 603
            V + +   ++              +++        +   GI++ + L+     +  +  
Sbjct: 174 EVEMAIANKIKD--------FPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSK 225

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             LL   + I DL     N +SP QL   L  +              K T QD  +   G
Sbjct: 226 GELLKQAKQITDLE----NPNSPTQLLTWLNKEQGLDIP-----NLQKKTVQDYLKEATG 276

Query: 664 DNPIIKNILEWR-QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720
                K +LE R Q+SK      + + + +    +RV   +      TGR A     L
Sbjct: 277 K---AKKMLEIRLQMSKTSVKKYNKMHDMMCSD-ERVRGLFQFYGAGTGRWAGRGVQL 330


>gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
 gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
          Length = 1464

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  ++      L       F + T  + A ++  I +A         
Sbjct: 402 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNI 456

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     +L+  T         L + +L   ++F ++   + + HN  
Sbjct: 457 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLVQ-VLKEFQEFCKD--TVLVAHNAS 513

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 FDVGFMNANYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|134287236|ref|YP_001110932.1| nuclease-VHS inhibit celluar gene expression [Heliothis virescens
           ascovirus 3e]
 gi|133722144|gb|ABO37266.1| nuclease-VHS inhibit celluar gene expression [Heliothis virescens
           ascovirus 3e]
          Length = 330

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 137 IISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDN 192
           + S D D++        LY           +D+E +++   +  E+ +    L G   D 
Sbjct: 209 VYSRDYDMLAYTGVDRVLYSISLPRCTYTCVDVEKLLRLMKLSREQFIDFCILCG--TDY 266

Query: 193 IPGIPGIGYKTAALLLQEYGNLENILI--NASRIKQKKRRENILE 235
              +PG+  K A  L++E  NLE ++      +   KK  + I  
Sbjct: 267 NKSVPGMHPKKALQLIKECLNLEGVISTHKLEQYIDKKTYDWIRN 311


>gi|34394896|dbj|BAC84412.1| unknown protein [Oryza sativa Japonica Group]
          Length = 501

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 22/139 (15%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---------YGIS-MRGFEDIMLMS 493
               E+   L++ FE    LK+G   K D + L            G   +  F D+    
Sbjct: 105 VPLAELREPLRELFERPEVLKLGFRFKQDLVYLSATFAAALGSSAGFERVEPFLDVTNAY 164

Query: 494 YVLDSG-------RSSHDIASIAQKWLS-YTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           Y L          R +  +A+I ++ L  Y  KE+  S  S  P+ +       ++A  +
Sbjct: 165 YYLKGHDMQKRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQI----QYAASD 220

Query: 546 SNVILQLWLLLRPKLIVEK 564
           +  +L ++ L   K+  E 
Sbjct: 221 AYYLLDIFDLFHQKIRTEG 239


>gi|22299895|ref|NP_683142.1| hypothetical protein tll2352 [Thermosynechococcus elongatus BP-1]
 gi|22296080|dbj|BAC09904.1| tll2352 [Thermosynechococcus elongatus BP-1]
          Length = 843

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 201 YKTAALLLQ------EYGNLE---NILINASRIKQKKRRENILEYAETARLSRKLVMLR- 250
             TA  L        + GNL     +L N   I++K   EN++  +E  + +  L   + 
Sbjct: 292 PNTALALSNLAAVYWQQGNLTQTLALLQNVQEIEEKNLSENLIVGSEDYKRNY-LATFQD 350

Query: 251 -TDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTT 309
            T+  +++ L+ L               AL  T ++ R     D  + N   +   +   
Sbjct: 351 STNAILSLHLQSLPRHPEAT--------ALALTTILRRKGRLLDFFSQNQARLQRQLAAP 402

Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369
           +   +   T++ R    K    S+     S++   QT        L   S          
Sbjct: 403 DQAKLEQLTKL-RTAIAKLVFASAEPAAFSQVQQLQTQASQLEAELSLRSASFRELTQPV 461

Query: 370 KIVNTK----DIQQWVQKLETIGS------ASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
            I   +         ++ +                    +     +P+   +    + D 
Sbjct: 462 TIAAVQRLIPANAALIEFIRYRPYDLRTQRFGEPRYGVYVLPARGQPLGKDLGPAAEIDA 521

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
              +      D  +   +       LT+++++ ++ +  N   L I  +
Sbjct: 522 QVRQTRFRLADRRLPKVEVQRAAQALTEQVITPIRPWLGNATHLLIAPD 570


>gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 1465

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|115471903|ref|NP_001059550.1| Os07g0452400 [Oryza sativa Japonica Group]
 gi|113611086|dbj|BAF21464.1| Os07g0452400 [Oryza sativa Japonica Group]
          Length = 501

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 22/139 (15%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---------YGIS-MRGFEDIMLMS 493
               E+   L++ FE    LK+G   K D + L            G   +  F D+    
Sbjct: 105 VPLAELREPLRELFERPEVLKLGFRFKQDLVYLSATFAAALGSSAGFERVEPFLDVTNAY 164

Query: 494 YVLDSG-------RSSHDIASIAQKWLS-YTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           Y L          R +  +A+I ++ L  Y  KE+  S  S  P+ +       ++A  +
Sbjct: 165 YYLKGHDMQKRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQI----QYAASD 220

Query: 546 SNVILQLWLLLRPKLIVEK 564
           +  +L ++ L   K+  E 
Sbjct: 221 AYYLLDIFDLFHQKIRTEG 239


>gi|125558189|gb|EAZ03725.1| hypothetical protein OsI_25856 [Oryza sativa Indica Group]
          Length = 501

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 22/139 (15%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---------YGIS-MRGFEDIMLMS 493
               E+   L++ FE    LK+G   K D + L            G   +  F D+    
Sbjct: 105 VPLAELREPLRELFERPEVLKLGFRFKQDLVYLSATFAAALGSSAGFERVEPFLDVTNAY 164

Query: 494 YVLDSG-------RSSHDIASIAQKWLS-YTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           Y L          R +  +A+I ++ L  Y  KE+  S  S  P+ +       ++A  +
Sbjct: 165 YYLKGHDMQKRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQI----QYAASD 220

Query: 546 SNVILQLWLLLRPKLIVEK 564
           +  +L ++ L   K+  E 
Sbjct: 221 AYYLLDIFDLFHQKIRTEG 239


>gi|73989272|ref|XP_860488.1| PREDICTED: similar to DNA-repair protein complementing XP-G cells
           (Xeroderma pigmentosum group G complementing protein)
           (DNA excision repair protein ERCC-5) isoform 3 [Canis
           familiaris]
          Length = 894

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP IE    EA+   A      +  G     I+ D D+    +         
Sbjct: 774 QELLRLFGIPYIEAP-MEAEAQCAILDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 828

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           K    E         + G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 829 KNKFVEYYQYVDFHNQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGHG 886

Query: 214 LENIL 218
           LE +L
Sbjct: 887 LEPLL 891


>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 958

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 390 ASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
            +  + T      H + I +A         I    +  D    V      L+        
Sbjct: 7   VAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAMLA 66

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISMRGFE-DIMLMSYV 495
           GK  + +E++  L  F  +     + HN  +D   L     R G S+  +  D   ++ V
Sbjct: 67  GKPRI-EEVVPDLASFLGD--LPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDTAELARV 123

Query: 496 LDSGRSSHDIASIAQ 510
                 +H +A++A+
Sbjct: 124 ALPLARNHRLATLAE 138


>gi|39936108|ref|NP_948384.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
 gi|39649962|emb|CAE28486.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
          Length = 392

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 12/153 (7%)

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY---LKKFF---ENEHFLKIGHNIKYD 472
           DT F  ET F  L +   Q ++ +  L  + L+    LK FF    NE  LK+ H  + D
Sbjct: 26  DTEFLRETTFYPL-LCVVQMASAEEALVIDALADGIDLKPFFDLMANEQVLKVFHAARQD 84

Query: 473 K-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
             +V HR GI      D  + + VL  G S      + ++   +   +    R +     
Sbjct: 85  IEIVWHRAGIVPHPIFDTQVAAMVLGYGDSI-AYDQLVERITGHRPDKTH--RFTDWSRR 141

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            ++  QV  +A+ +   +  ++  L   L    
Sbjct: 142 PLTQEQV-HYAVSDVTHLRDVFAALDADLKKRG 173


>gi|192291826|ref|YP_001992431.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
 gi|192285575|gb|ACF01956.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
          Length = 392

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 12/153 (7%)

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY---LKKFF---ENEHFLKIGHNIKYD 472
           DT F  ET F  L +   Q ++ +  L  + L+    LK FF    NE  LK+ H  + D
Sbjct: 26  DTEFLRETTFYPL-LCVVQMASAEEALVIDALADGIDLKPFFDLMANEQVLKVFHAARQD 84

Query: 473 K-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
             +V HR GI      D  + + VL  G S      + ++   +   +    R +     
Sbjct: 85  IEIVWHRAGIVPHPIFDTQVAAMVLGYGDSI-AYDQLVERITGHRPDKTH--RFTDWSRR 141

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            ++  QV  +A+ +   +  ++  L   L    
Sbjct: 142 PLTQEQV-HYAVSDVTHLRDVFAALDADLKKRG 173


>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET-IFIDLSVHTSQDSTGK 442
                     + T        +   I +  +     +++         +     Q +   
Sbjct: 33  ASEQPLVFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGIS 92

Query: 443 NTLTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
           + + ++    + L    FE  +  L + HN  +D+  L     R G +        + +S
Sbjct: 93  DAMVRDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLS 152

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    S H + ++  +                +P         +  A+ +++++ Q W
Sbjct: 153 RALFPRESRHGLDALIARH-------------GLVP-------AARHRALADADLLWQFW 192

Query: 554 LLLRPKLIVEKLLH 567
             L   + +E+L  
Sbjct: 193 RHLHGIVPLERLRD 206


>gi|291617685|ref|YP_003520427.1| Rnd [Pantoea ananatis LMG 20103]
 gi|291152715|gb|ADD77299.1| Rnd [Pantoea ananatis LMG 20103]
          Length = 373

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 78/257 (30%), Gaps = 30/257 (11%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y+ I N   + +   K     + +          ++ +   I +   +Q          
Sbjct: 2   NYSLIDNDDRLAEVCNKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQ--------LV 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG 485
           +   L V                 S   +   +    K  H    D ++ LHR+ +  + 
Sbjct: 54  LIDPLPVRDW--------------SPFIELLTDTRVTKFLHAGGEDLEVFLHRFAVLPQP 99

Query: 486 FEDIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SG+  S   AS+   +      E+ KS   +  + +    +  ++A  
Sbjct: 100 MIDTQILA--AFSGQPLSWGFASMVAHFTQV---ELDKSEARTDWLARPLTERQCQYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           + + +L +   L  ++     +       +      +  +       D     Q+     
Sbjct: 155 DVHYLLPIAHQLMQQVEQAGNMAAALSECENLCQRRLDSLAPEDAWRDITNAWQLRPRQL 214

Query: 604 KNLLSLEENIYDLSGEK 620
             L  L      ++ EK
Sbjct: 215 AALQRLAAWRLKVAREK 231


>gi|301121670|ref|XP_002908562.1| DNA repair protein, putative [Phytophthora infestans T30-4]
 gi|262103593|gb|EEY61645.1| DNA repair protein, putative [Phytophthora infestans T30-4]
          Length = 483

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 63/213 (29%), Gaps = 42/213 (19%)

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT---CLYDT 157
             + FG+P +     EA+   A    +   +G    +I+ D D+             +  
Sbjct: 202 LLRLFGVPFLVSP-MEAEAQCAALEQLGLVDG----VITDDSDIFPFGGQRVYKNIFHHQ 256

Query: 158 VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
              E      + ++ G   E+++ L  L G   D   G+ GIG   A  +   Y  +E +
Sbjct: 257 KFVEAFSARDIEQELGFSREQIIALALLLG--SDYTDGVRGIGIVNATEIAAAYPKIEGL 314

Query: 218 LI--------NASRIKQK---------------KRRENILEYAETARL---------SRK 245
                     N +   Q+                 RE       TAR          S++
Sbjct: 315 REFKDWVGEFNVAEEAQRGKEDESGGDSDSEDETVRERFQRSHATARRKWELGDEFPSKQ 374

Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278
           +V       +            +   L ++   
Sbjct: 375 VVQAYMSPQVDRSDARFSWSAPDVASLRNYCAK 407


>gi|303271551|ref|XP_003055137.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463111|gb|EEH60389.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 516

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           LK   E+    K+  + + D   L H++GI++ G  DI L 
Sbjct: 322 LKSVLEDASITKLMFDCRVDSDALYHQHGIALNGVFDIQLA 362


>gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
 gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
          Length = 1390

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 20/165 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKD 418
            Y IN+     +V+ +  Q +     T     F I T  +D      I I A+   + + 
Sbjct: 345 AYYINDVDDRVVVHGEQEQDF-----TGEVVCFDIETTGLDNRRDVIIEIGAVILRNGEI 399

Query: 419 DTSFKVET-IFIDLSVHTSQ-----DSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKY 471
             +F         LS    +     D   +   ++E    ++ F E         HN ++
Sbjct: 400 AETFDTFVSPGRPLSREIVELTSITDKMLEGAPSQE--EAIRAFLEFAGDRPLAAHNAEF 457

Query: 472 DKLVLH----RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511
           D   +     RYGI       D ++++  L      + +  +A+ 
Sbjct: 458 DMGFIAEGCRRYGIPFEKTSIDTLILAQNLLPDLGKYKLDIVAEH 502


>gi|260550793|ref|ZP_05825000.1| 3'-5' exonuclease [Acinetobacter sp. RUH2624]
 gi|260406103|gb|EEW99588.1| 3'-5' exonuclease [Acinetobacter sp. RUH2624]
          Length = 213

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 21/145 (14%)

Query: 345 QTPQKLFLERLQKLSQY-PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403
           + P  L    +Q+L  +  +N+ +   I N +  +   ++L+      F     +   F 
Sbjct: 3   EAPSLLDKASIQQLPPFKNLNHQNIVVIENIEQCKTIEEELKAAIFLGFDSE--SKPTFR 60

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
              +    ST       + + +     ++  T              L +L+    N+  L
Sbjct: 61  VGEV----STGPHLIQLATEHKAYLFHVNSST--------------LKFLQPILSNQKQL 102

Query: 464 KIGHNIKYDKLVLHRYGISMRGFED 488
           K+G  +K DK + H+ GI +    D
Sbjct: 103 KVGFGLKNDKHIFHKKGIKLESCVD 127


>gi|254260344|ref|ZP_04951398.1| phosphodiesterase I [Burkholderia pseudomallei 1710a]
 gi|254219033|gb|EET08417.1| phosphodiesterase I [Burkholderia pseudomallei 1710a]
          Length = 258

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 57/157 (36%), Gaps = 24/157 (15%)

Query: 78  PDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF---EADDIIATYTYIAEKEGFA 134
             Y+  R K           +R   + +  P    + +   EADD +A  ++++      
Sbjct: 43  KPYQGQRHKRKP---RNWQFLREVLEHYEGPNFRPKVWVTREADDGMAHCSHLS-----D 94

Query: 135 VTIISTDKDLMQLVSPTTCLYD----TVKEEKIDIEHVIK-KWGIPPEKMVCLQALTGDS 189
           + I + DKD+  L             TV     D+      ++G   EK   LQ L GD+
Sbjct: 95  IAISTRDKDMRMLPGLHVNWMSWELTTVPRGAFDVSGTDGLQYG---EKWFYLQLLQGDT 151

Query: 190 IDNIPGIP-----GIGYKTAALLLQEYGNLENILINA 221
            DNIPG+P       G   A   L    N E+     
Sbjct: 152 ADNIPGLPLLFGQQCGDARAVKYLAGVANKEDAYDRV 188


>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
 gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
          Length = 373

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 56/192 (29%), Gaps = 22/192 (11%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             + +   + + +       +          + F+ +   + +         +  +    
Sbjct: 4   QLVESDAALAELMNAAIGCDAVMVDTEFMRRNTFYPQVALVQLCFCGGGATGTAWM---- 59

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE 487
                         + L  E  + L   F++   +KI H+   D  V  R  G+      
Sbjct: 60  -------------IDPLKIEDPAPLANLFKDAGVIKILHSASEDLEVFQRWLGVLPLPLF 106

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D    + ++        +   +   L    +++ K    S  + +        +A ++  
Sbjct: 107 DTQKAAALVG---LDFGLGYRSMV-LELCNEDLPKGETRSDWLQRPLTESQCHYAAQDVI 162

Query: 548 VILQLWLLLRPK 559
            +L  + ++  +
Sbjct: 163 WLLDAYQIIAER 174


>gi|195586140|ref|XP_002082836.1| GD25020 [Drosophila simulans]
 gi|194194845|gb|EDX08421.1| GD25020 [Drosophila simulans]
          Length = 860

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 116/295 (39%), Gaps = 38/295 (12%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY- 452
            +TD +  + +K  +I +S   +  +   K E   I++     +           +++  
Sbjct: 539 FVTDIILKYAAKNESIVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDG 598

Query: 453 -LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL---DSGRSSH---- 503
            LK   E++  +K+ H+ + D   +  ++GI +R   D      +L   +SG+  +    
Sbjct: 599 GLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKY 658

Query: 504 -DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL- 555
             + S+ +++      +    K+I +  +       ++   +  +A  +  V++   L  
Sbjct: 659 ISLNSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMML-YAAGDVLVLIHDQLFG 717

Query: 556 -LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEE 611
            L  ++  E    ++   +     ++ Q++   ++I +   ++VS E   + + L    +
Sbjct: 718 NLARQIKPEN-RALFS--ELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLAQTSK 773

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           +I         + S +++   L   +      K +   +   A+ LE++    NP
Sbjct: 774 SI---------VLSNREI--RLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNP 817


>gi|195347186|ref|XP_002040135.1| GM15515 [Drosophila sechellia]
 gi|194135484|gb|EDW57000.1| GM15515 [Drosophila sechellia]
          Length = 1035

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 116/295 (39%), Gaps = 38/295 (12%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY- 452
            +TD +  + +K  +I +S   +  +   K E   I++     +           +++  
Sbjct: 609 FVTDIILKYAAKNESIVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDG 668

Query: 453 -LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL---DSGRSSH---- 503
            LK   E++  +K+ H+ + D   +  ++GI +R   D      +L   +SG+  +    
Sbjct: 669 GLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKY 728

Query: 504 -DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL- 555
             + S+ +++      +    K+I +  +       ++   +  +A  +  V++   L  
Sbjct: 729 ISLNSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMML-YAAGDVLVLIHDQLFG 787

Query: 556 -LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEE 611
            L  ++  E    ++   +     ++ Q++   ++I +   ++VS E   + + L    +
Sbjct: 788 NLARQIKPEN-RALFS--ELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLAQTSK 843

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           +I         + S +++   L   +      K +   +   A+ LE++    NP
Sbjct: 844 SI---------VLSNREI--RLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNP 887


>gi|304321318|ref|YP_003854961.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
 gi|303300220|gb|ADM09819.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
          Length = 383

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 61/200 (30%), Gaps = 26/200 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             +  T+D+     +L      +          ++ K   I +++ ++          I 
Sbjct: 2   HIVTQTQDLTALCGRLAKHDFVTVDTEFMRERTYYPKLCLIQVASTEEA--------AII 53

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE 487
             L+                 L+   +   +   LK+ H  + D  + ++  G       
Sbjct: 54  DPLAAALD-------------LAPFLELLADPSVLKVFHAARQDLEIFYKLMGKVPAPLF 100

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + +    +      +   A        +    SR +      +SD Q+  +A+ +  
Sbjct: 101 DTQIAAM---ACGHGDQVGYEALIREVTGAQVDKGSRFTDWAKRPLSDKQLT-YALGDVT 156

Query: 548 VILQLWLLLRPKLIVEKLLH 567
            ++  +  L  +L  +  L 
Sbjct: 157 HLVDAYQALITELEEKGRLE 176


>gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 193

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 15/139 (10%)

Query: 388 GSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIF------IDLSVHTSQDST 440
           G  +  + T  +     + + I AI      +  SF+             +++H   D  
Sbjct: 9   GFVAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPSEAVAIHGITDEM 68

Query: 441 GKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG------FEDIMLMS 493
            +      E    L  F ++E    + HN  +D   L     +++G        D   ++
Sbjct: 69  VEGAPGLSEASIALASFLKDEE-PMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGLA 127

Query: 494 YVLDSGRSSHDIASIAQKW 512
                G   + + ++A+ +
Sbjct: 128 RKAFPGIKGYSLVALARHF 146


>gi|195339243|ref|XP_002036229.1| GM16947 [Drosophila sechellia]
 gi|194130109|gb|EDW52152.1| GM16947 [Drosophila sechellia]
          Length = 1108

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 89/309 (28%), Gaps = 44/309 (14%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 735  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATDLTHGT--ITDDSDIWLFGGRTVYKNFF 789

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 790  AQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGQ 847

Query: 215  ENILINASRIKQKKRRENILEYAE--------------TARLS--RKL------------ 246
            +    N   I  +   + ++++ +              +ARLS  +KL            
Sbjct: 848  D---ANGPGICNQSVLQTLIKFRDWWQAHKSSNLPPGSSARLSLRKKLKNIELHEGFPSG 904

Query: 247  --VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
              V       I    +       +   +        F    ++           I    +
Sbjct: 905  AVVEAYLAPTIDDNRDAFSWGTPDVESIRE-FTRKSFGWTTSKTDDILMPVMKKINEKKI 963

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              +            + +    K  Q +          + + P+K+   R  K +    +
Sbjct: 964  QGSIRNYFTAKSALRVQQPNVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDD 1023

Query: 365  NDSYTKIVN 373
            + +   +  
Sbjct: 1024 DLAIADVAT 1032


>gi|194743298|ref|XP_001954137.1| GF18126 [Drosophila ananassae]
 gi|190627174|gb|EDV42698.1| GF18126 [Drosophila ananassae]
          Length = 909

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 89/240 (37%), Gaps = 28/240 (11%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P    L++ + +    +++     + + + ++Q +++L      +  +   +   F   
Sbjct: 261 EPPVQQLQKQKPILPNLMSDTELMLVDSVEKLKQALEELRQAPQIAIDVEHHSYRTF--- 317

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + I+ L Q                   S+D      + ++ +  L     +   LKI
Sbjct: 318 ---MGITCLVQMST---------------RSKDYIFDTLILRDEMHILNLVLTDPKKLKI 359

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D   L R   + +    D    +  L+  R S  +A + + ++     ++ KS 
Sbjct: 360 LHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNLARLS--LAFLLKHYIDL---DVDKSL 414

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQM 583
           + +    +    Q+ ++A ++++ ++ ++  +   L+ +++   +   +     +V  + 
Sbjct: 415 QLADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLEQQVETGLLNNVYMMSTEVCKKR 474


>gi|50121299|ref|YP_050466.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
 gi|49611825|emb|CAG75274.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
          Length = 374

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I +   +QQ   +       +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITSDIGLQQVCSQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         +    +E   K  H    D  V    +G     
Sbjct: 62  DWAP----------------------FQALLRDEEVTKFLHAGSEDLEVFLNTFGTLPTP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           F D   L +++      S+  A++   ++  +   + KS   +  + +    +  ++A  
Sbjct: 100 FIDTQILAAFLGKP--LSYGFAALVADYMGVS---LDKSESRTDWLARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L + + L
Sbjct: 155 DVFYLLPMAIQL 166


>gi|261209844|ref|ZP_05924146.1| ribonuclease D [Vibrio sp. RC341]
 gi|260841142|gb|EEX67662.1| ribonuclease D [Vibrio sp. RC341]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +  T F  L +    D    + +   ++  +  F    ++   LK+ H    D  
Sbjct: 53  DTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVMDEMTPFVELLQDTSVLKVLHACGEDLE 112

Query: 475 VLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           V    +G +     D  +M+  L  G S+   A++ Q  L     E+ KS   +  + + 
Sbjct: 113 VFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQDQLQV---ELDKSESRTDWLARP 168

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
              +  E+A  +   +L ++  L  ++       
Sbjct: 169 LSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWE 202


>gi|256827062|ref|YP_003151021.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
 gi|256583205|gb|ACU94339.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
          Length = 399

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 45/127 (35%), Gaps = 23/127 (18%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I +  +++ + ++       +          ++++   + + T D+          I   
Sbjct: 21  ITDQAELEAFAKRALDSSVLAIDTEFLREKTYYARLCLLQMQTDDE--------TIIVDP 72

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI 489
            +V                L  L   F++   +KI H+ + D  +L+R  G+  +   D 
Sbjct: 73  FAVSD--------------LGVLAPLFQSSSIMKIVHSGRQDLEILNREVGLLPQPLFDT 118

Query: 490 MLMSYVL 496
            + + +L
Sbjct: 119 QVAAALL 125


>gi|187733914|ref|YP_001880596.1| ribonuclease D [Shigella boydii CDC 3083-94]
 gi|187430906|gb|ACD10180.1| ribonuclease D [Shigella boydii CDC 3083-94]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 31/220 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  ++S        S   AS+ +++   T   + KS   +  + +    +  E+A  +
Sbjct: 100 LIDTQILS-AFCGRPMSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
              +L +   L  +          L     +     +VV+
Sbjct: 156 VWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6]
 gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 1463

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  +       L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVERD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 70/221 (31%), Gaps = 27/221 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           L       F + T  + A ++  I + A+   D +    F         LS+        
Sbjct: 416 LAEDTYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFTSFANPHHPLSMTTIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDI 489
           + D        +E+L     +  +   + + HN  +D   L+        G       D 
Sbjct: 476 TDDMLKDAPDVEEVLRQFYDWIGD--SVLVAHNASFDIGFLNVGFAKIGLGKVTNPVIDT 533

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + ++  L     +H + ++ +K+      E+ +          I D++   + +      
Sbjct: 534 LELARFLYPDLKNHRLNTLCKKF----DIELTQ------HHRAIYDAEATGYLLMRMLKD 583

Query: 550 LQLWLLLR-PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
            Q   +L   +L       V  +  +P    +      G++
Sbjct: 584 AQERGILYHDELNKRSKEEVSYQRSRPFHVTLLAQNDIGLK 624


>gi|328698648|ref|XP_001946371.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           [Acyrthosiphon pisum]
          Length = 522

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDI 505
           K I S L     N + +K+G  I  D  +L   Y I++ G  D+  ++   +S      +
Sbjct: 97  KTIPSSLSDILSNSNIIKVGVAILDDAHLLMNDYNINVSGCIDLRYLAK--ESCLEERSL 154

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           +++A K L     +    R S    ++++D Q  E+A  ++ V ++++  LR K
Sbjct: 155 SALAFKLLGCELDKDWHVRASDWEAEELNDRQ-TEYAALDAYVAVKIFEQLRNK 207


>gi|221468312|ref|NP_726360.3| egalitarian [Drosophila melanogaster]
 gi|220902361|gb|AAF47054.4| egalitarian [Drosophila melanogaster]
          Length = 1004

 Score = 43.9 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 116/295 (39%), Gaps = 38/295 (12%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY- 452
            +TD +  + +K  +I +S   +  +   K E   I++     +           +++  
Sbjct: 541 FVTDIILKYAAKNESIVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDG 600

Query: 453 -LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL---DSGRSSH---- 503
            LK   E++  +K+ H+ + D   +  ++GI +R   D      +L   +SG+  +    
Sbjct: 601 GLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKY 660

Query: 504 -DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL- 555
             + S+ +++      +    K+I +  +       ++   +  +A  +  V++   L  
Sbjct: 661 ISLNSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMML-YAAGDVLVLIHDQLFG 719

Query: 556 -LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEE 611
            L  ++  E    ++   +     ++ Q++   ++I +   ++VS E   + + L    +
Sbjct: 720 NLARQIKPEN-RALFS--ELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLAQTSK 775

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           +I         + S +++   L   +      K +   +   A+ LE++    NP
Sbjct: 776 SI---------VLSNREI--RLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNP 819


>gi|309356159|emb|CAP37850.2| hypothetical protein CBG_20918 [Caenorhabditis briggsae AF16]
          Length = 1587

 Score = 43.9 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 883  NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
             +R+ +N  +Q SA D     +IS+    + +++  + ++ IHDE+ +   E++    +
Sbjct: 1099 YKRSVMNWIVQSSAVDFLHLLLISMQWLCDTYQIDARFVISIHDEVRYMCAEKDAPRLA 1157



 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 70/216 (32%), Gaps = 38/216 (17%)

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE-PNLQNIPIKTDLGQ 731
            +RQ   I           I+     +      A T++ R        L N      +G 
Sbjct: 773 RYRQEVAIWYPEKSWKSGEIDMMEGAIAAAVVPAGTVSRRSVHKLWVTLTNQSTGHVIGT 832

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKIT------------PLYQVFEN------ 773
            I+    +P   KL+ AD    E   LA +                P    F N      
Sbjct: 833 GIKAMVQAPKGFKLVGADVDSQEQW-LAALYGDASAEKRLPLEHRVPGKTAFSNMMLAGS 891

Query: 774 ---SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL----RIPRS 826
              + D+H +VA ++            R HAK +N++ +YG         L     + ++
Sbjct: 892 KSDNTDLHSVVANQL---------KISRNHAKVLNYARLYGSGETHAGKHLMRVGGMKQT 942

Query: 827 EAADYIKRYFHRFP-GIHEYIE-KTKNFVRQNGYVE 860
           +A     + F        +Y++  +K     + Y+E
Sbjct: 943 DAEATASQLFKLTKGETAKYMKVDSKMNCLVDRYIE 978


>gi|218296594|ref|ZP_03497312.1| DNA polymerase I [Thermus aquaticus Y51MC23]
 gi|218242907|gb|EED09440.1| DNA polymerase I [Thermus aquaticus Y51MC23]
          Length = 39

 Score = 43.9 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972
           E     +++    ME        L VPL+V + +  +W
Sbjct: 1   ERAEAVARLAKEVMEGV----YPLAVPLEVEVGIGEDW 34


>gi|33589402|gb|AAQ22468.1| RE33408p [Drosophila melanogaster]
          Length = 1004

 Score = 43.9 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 116/295 (39%), Gaps = 38/295 (12%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY- 452
            +TD +  + +K  +I +S   +  +   K E   I++     +           +++  
Sbjct: 541 FVTDIILKYAAKNESIVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDG 600

Query: 453 -LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL---DSGRSSH---- 503
            LK   E++  +K+ H+ + D   +  ++GI +R   D      +L   +SG+  +    
Sbjct: 601 GLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKY 660

Query: 504 -DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL- 555
             + S+ +++      +    K+I +  +       ++   +  +A  +  V++   L  
Sbjct: 661 ISLNSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMML-YAAGDVLVLIHDQLFG 719

Query: 556 -LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEE 611
            L  ++  E    ++   +     ++ Q++   ++I +   ++VS E   + + L    +
Sbjct: 720 NLARQIKPEN-RALFS--ELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLAQTSK 775

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           +I         + S +++   L   +      K +   +   A+ LE++    NP
Sbjct: 776 SI---------VLSNREI--RLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNP 819


>gi|83571745|ref|YP_424997.1| hypothetical protein PK1Ep31 [Enterobacteria phage K1E]
 gi|83308196|emb|CAJ29428.1| gp20 protein [Enterobacteria phage K1E]
          Length = 341

 Score = 43.9 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 57/178 (32%), Gaps = 28/178 (15%)

Query: 67  YPAVTFRNEIY--PDYKANRP-KIPEMLLPQLPLV-----------RLATQAFGIPAIEI 112
                FR  +     YK  R  + P         +             A     I   + 
Sbjct: 98  KSEANFRVRLAFTKPYKGQRKTEKPPFFYELREHLLEVHGAILADGEEADDLMSIAQWDS 157

Query: 113 QGFEADDIIATYTYIAEKEGF--AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK 170
                 D    +   + +        I+S DKDLM  + P   L    +++ ++    ++
Sbjct: 158 HRRFQQDTGNEFAIGSPEHKAFSDTCIVSLDKDLM--IVPGWHLQPGQEKKWVEPMGWLE 215

Query: 171 KWGIPPEKMVCLQA----------LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
                  ++  L+           + GD IDN  GIPG G K A  LL++    + + 
Sbjct: 216 LRRKVNGQVKDLKGAGLMFHYAQMIIGDDIDNYAGIPGRGAKYAYDLLKDCKTEKELY 273


>gi|212224248|ref|YP_002307484.1| flap endonuclease-1 [Thermococcus onnurineus NA1]
 gi|226700956|sp|B6YWX4|FEN_THEON RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|212009205|gb|ACJ16587.1| flap structure-specific endonuclease [Thermococcus onnurineus NA1]
          Length = 341

 Score = 43.9 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 76/219 (34%), Gaps = 46/219 (21%)

Query: 75  EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134
           E    Y     ++ E L+      +   +  GIP I+       +  A   Y+A K+   
Sbjct: 115 EEAKKYAMRATRVNEGLINDA---KTLLELMGIPVIQAP----SEGEAQAAYMAAKK--K 165

Query: 135 VTII-STDKDLMQLVSPTTCLYDT---------------VKEEKIDIEHVIKKWGIPPEK 178
           V    S D D +   +P      T               VK E I +E V+K+  I  EK
Sbjct: 166 VYASASQDYDSLLFGAPKLVRNLTITGRRKLPGKNVYVEVKPELIVLEEVLKELSIDREK 225

Query: 179 MVCLQALTGDSIDNIP-GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237
           ++ +  L G   D  P GI GIG K A  +++   +        S +     +E      
Sbjct: 226 LIEMAILVG--TDYNPGGIKGIGPKKALTIVKRTKDPLKKYQKESEVDLYAIKE------ 277

Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
                         + P+T   E L   + +   +I FL
Sbjct: 278 -----------FFLNPPVTDDYE-LKWREPDEEGIIKFL 304


>gi|158292666|ref|XP_314043.4| AGAP005155-PA [Anopheles gambiae str. PEST]
 gi|157017099|gb|EAA09562.4| AGAP005155-PA [Anopheles gambiae str. PEST]
          Length = 1064

 Score = 43.9 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKL-VLHRYGISMRGFEDIMLMSYVL---DSGRSSHDIASI 508
           LK+  E+E  +K+ H+ + D + + +++ I +R   D      VL   D G+  + + ++
Sbjct: 603 LKEILESEKVIKVIHDCRNDSVNLFNQFQILLRNVFDTQSAHAVLQFQDQGKQVYKVKNV 662

Query: 509 AQKWLSYTRKEILKSRKSSI 528
           +   L       +   K  +
Sbjct: 663 SLNTLCEMYNATVNPMKDQL 682


>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET-IFIDLSVHTSQDSTGK 442
                     + T        +   I +  +     +++         +     Q +   
Sbjct: 10  ASEQPLVFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGIS 69

Query: 443 NTLTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
           + + ++    + L    FE  +  L + HN  +D+  L     R G +        + +S
Sbjct: 70  DAMVRDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLS 129

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    S H + ++  +                +P         +  A+ +++++ Q W
Sbjct: 130 RALFPRESRHGLDALIARH-------------GLVP-------AARHRALADADLLWQFW 169

Query: 554 LLLRPKLIVEKLLH 567
             L   + +E+L  
Sbjct: 170 RHLHGIVPLERLRD 183


>gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005]
 gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1465

 Score = 43.9 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750]
 gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1465

 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS]
 gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS]
          Length = 1465

 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
 gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
          Length = 1465

 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|330950408|gb|EGH50668.1| excinuclease ABC subunit C [Pseudomonas syringae Cit 7]
          Length = 336

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 178 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 229

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 230 GFETLYLNDSAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 281

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 282 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 329


>gi|225352286|ref|ZP_03743309.1| hypothetical protein BIFPSEUDO_03902 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157533|gb|EEG70872.1| hypothetical protein BIFPSEUDO_03902 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 243

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 72/196 (36%), Gaps = 12/196 (6%)

Query: 383 KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           +L+         + DT+ AF  +   +A +  +L    + +        D  V   +D  
Sbjct: 6   RLQAEPREGVPDVIDTLPAFREYCSALASSHGSLAADAERASGFRYGHDDWLVQFKRDGA 65

Query: 441 GKNTLTKEILSYLKKFFEN-----EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L  + L+     + +        + I H+   D    +  G+  +   D  + + +
Sbjct: 66  GIGLLDPQALAAEGADWNDFNRAVGDAVWILHDSLQDLPGFNDLGLKPQRLFDTEIAARL 125

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  ++++L   
Sbjct: 126 L--GMKRFGLAAVTEHYLGLT---LAKEHSAADWSYRPLPRDWRNYAALDVELLIELETT 180

Query: 556 LRPKLIVEKLLHVYER 571
           +R +L  +  +   E 
Sbjct: 181 MRAELQKQGKIEWAEE 196


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 29/231 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------ 433
           + L       F + T  + A ++  I +A   +   +  D           LS       
Sbjct: 412 RDLMEDTYVVFDVETTGLSAVYNTIIELAAVKVQGGEIIDRFESFANPHEPLSPTIIDLT 471

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
             + D         ++L   K +  N+  + + HN  +D   L     + G+        
Sbjct: 472 GITDDMVADAPEIHDVLKDFKAWCGND--ILVAHNAAFDMAFLDAGYQKAGMDKAANPVI 529

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ---VQE 540
           D + M  +L     ++ + ++ +K+    +S+ R          +    + D+    +  
Sbjct: 530 DTLEMGRMLYPTFKNYRLNTLCKKFNIELVSHHRAIYDAEATGHLLWKMVRDAVEKGITT 589

Query: 541 HAIENSNVILQLWLLLRPK------LIVEKLLHVYERLDKPMIDVVSQMEI 585
           H+  N       +   RP          E L ++Y+ + K  ID   ++  
Sbjct: 590 HSALNDQSSPDDYKKQRPNHCTIYAKNAEGLKNLYKLVSKAHIDYFFRVPR 640


>gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429]
 gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096]
 gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1465

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|82543793|ref|YP_407740.1| ribonuclease D [Shigella boydii Sb227]
 gi|81245204|gb|ABB65912.1| RNase D [Shigella boydii Sb227]
          Length = 375

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 31/220 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  ++S        S   AS+ +++   T   + KS   +  + +    +  E+A  +
Sbjct: 100 LIDTQILS-AFCGRPMSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
              +L +   L  +          L     +     +VV+
Sbjct: 156 VWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394]
 gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1465

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315]
 gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1]
 gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           MGAS315]
 gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           SSI-1]
          Length = 1465

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|115298568|ref|YP_762421.1| 40.8 kDa FEN-1/FLAP-like endonuclease XPG N-I domain [Spodoptera
           frugiperda ascovirus 1a]
 gi|114416835|emb|CAL44666.1| 40.8 kDa FEN-1/FLAP-like endonuclease XPG N-I domain [Spodoptera
           frugiperda ascovirus 1a]
          Length = 356

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 11/132 (8%)

Query: 92  LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-P 150
                 V+   +  G   I           A              + S D D++      
Sbjct: 172 RVDFNFVQEYLKELGETVILSPNEAETMCAAMIHTRMVD-----VVYSRDYDMLAYDGVD 226

Query: 151 TTCLYDTVKEEKI---DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
                 ++ +      D+  ++   G+   + +    L   S D    IPGI  K A  L
Sbjct: 227 MVVFSISLPKGTFTCVDVTKLLNNMGMTRRQFIDFCILC--STDYNRSIPGIHPKRAFNL 284

Query: 208 LQEYGNLENILI 219
           ++E   L+ +L 
Sbjct: 285 IKECTTLDVVLQ 296


>gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
 gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
          Length = 1424

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSV 433
           +L+      F + T  + A H+  I IA S + + +         D    +     +L+ 
Sbjct: 380 ELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQFDEFIDPGHPLSAFTTELTG 439

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFE 487
            T     G   L + +L   ++F +    + + HN  +D   ++    R+ +   ++   
Sbjct: 440 ITDNHVKGAKPLVQ-VLQEFQEFCQ--GTVLVAHNATFDVGFMNANYERHQLPTILQPVI 496

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D +  +  L      H +  + +++
Sbjct: 497 DTLEFARNLYPEYKRHGLGPLTKRF 521


>gi|308495870|ref|XP_003110123.1| hypothetical protein CRE_06485 [Caenorhabditis remanei]
 gi|308244960|gb|EFO88912.1| hypothetical protein CRE_06485 [Caenorhabditis remanei]
          Length = 1337

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%)

Query: 869  YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
              E     +      +R+ +N  +Q SA D     +IS+    + +K+  + ++ IHDE+
Sbjct: 1190 LPEGTPDSAYFDRRYKRSVMNWIVQSSAVDFLHLLLISMQWLCDIYKIDARFVISIHDEV 1249

Query: 929  VFEVPEEEITTAS 941
             +   E++    +
Sbjct: 1250 RYMCKEKDAPRLA 1262


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 76/223 (34%), Gaps = 27/223 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSVHTSQDS 439
           ++L       F + T  + A ++  I + A+   D +    F         LSV T + +
Sbjct: 422 RRLSEETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELT 481

Query: 440 TGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLVLHR------YGISMRGFE 487
              + + K      E+L+    +  +     + HN  +D   L+        G       
Sbjct: 482 GITDEMVKDAPKPDEVLARFVDWAGDATL--VAHNASFDIGFLNAGLARMGRGKIANPVI 539

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D + ++  L     +H + ++ +K+      E+ +          I D++   H +    
Sbjct: 540 DTLELARFLYPDLKNHRLNTLCKKF----DIELTQ------HHRAIYDAEATGHLLMRLL 589

Query: 548 VILQLW-LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +   +L   +L          RL +P    +     TG++
Sbjct: 590 KEAEERGILFHDELNSRTHSEASYRLARPFHVTLLAQNETGLK 632


>gi|168004523|ref|XP_001754961.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694065|gb|EDQ80415.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 314

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 10/130 (7%)

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKE--EK 162
            +    +  +EAD   A      E +     ++S+D D +    P      D V+   + 
Sbjct: 159 SLDVCAVGEYEADVTCAHMCQSGEVD----AVLSSDYDSLLFGCPYLIKDIDMVEGYADV 214

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-LINA 221
           I ++ +   + I   +++ +  L G   D    I  +G KTA   +Q +G LEN    N 
Sbjct: 215 ITLQSIYNYFNIDRFQVIDICILMG--TDYNKKISRVGPKTALAEIQSHGKLENTKYYNK 272

Query: 222 SRIKQKKRRE 231
             +   + R+
Sbjct: 273 KELSINRLRQ 282


>gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo]
 gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo]
          Length = 1465

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|123442616|ref|YP_001006593.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122089577|emb|CAL12426.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 373

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +QQ  ++  T    +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITTDSALQQVCEQARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         ++  ++ + +K  H    D  V    + +    
Sbjct: 62  QWQP----------------------FRELLQDLNVVKYLHAGSEDLEVFLNAFELMPTP 99

Query: 486 FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SGRS S   A +  ++      E+ KS   +  I +    +  ++A  
Sbjct: 100 MIDTQVLA--AFSGRSLSCGFAMLVNEFEGV---ELDKSESRTDWIARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L L   L
Sbjct: 155 DVFYLLPLATKL 166


>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1442

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 18/196 (9%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDSTGKNTL 445
               F + T  + A     I IA   +  K   DT          +    ++ ++  + +
Sbjct: 426 EFVFFDLETTGLYAGRDAIIEIAAVKIKNKHVLDTFQTFVNPHRPIPQKITELTSITDQM 485

Query: 446 T---KEILSYLKKFFE--NEHFLKIGHNIKYDK----LVLHRYGISMR-GFEDIMLMSYV 495
               KE  + ++ F +  +   L   HN  +D     + L RYGI     + D + M+  
Sbjct: 486 VAQGKEEEAAVRAFLDFCDGKIL-AAHNASFDMGFMSIALERYGIPNTITYVDTLPMART 544

Query: 496 LDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           L    + H++  +A  +   + +  + I  S  S+    ++     ++H    ++  L  
Sbjct: 545 LIPDIARHNLKKLASYFKIDMGHHHRAIDDSICSAKIFVRLMGLAEKQHCDRAAD--LNR 602

Query: 553 WLLLRPKLIVEKLLHV 568
            + L   +  E+  HV
Sbjct: 603 LMRLEQIIKTERPYHV 618


>gi|251789601|ref|YP_003004322.1| ribonuclease D [Dickeya zeae Ech1591]
 gi|247538222|gb|ACT06843.1| ribonuclease D [Dickeya zeae Ech1591]
          Length = 373

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 58/203 (28%), Gaps = 29/203 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I   + +     +   +   +          ++ +   I +   D           
Sbjct: 2   NYQLITTDEGLSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLS-------- 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L++                 +  +   +N    K  H    D  V    +G     
Sbjct: 54  LIDPLAIRDW--------------APFRALLQNPQITKFLHAGSEDLEVFLNAFGCLPSP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           F D   L +++      S+  A++   +    +  + KS   +  + +    +  ++A  
Sbjct: 100 FIDSQILAAFLGKP--LSYGFAALVADY---RQVALDKSESRTDWLARPLSEKQCQYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEKLLH 567
           +   +L +   L  +      L 
Sbjct: 155 DVFYLLPVARTLVAETRAAGWLD 177


>gi|268533370|ref|XP_002631813.1| Hypothetical protein CBG21034 [Caenorhabditis briggsae]
 gi|187023266|emb|CAP37947.1| hypothetical protein CBG_21034 [Caenorhabditis briggsae AF16]
          Length = 854

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 33/73 (45%)

Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928
             E     +      +R+ +N  +Q SA D     +IS+    + +++  + ++ IHDE+
Sbjct: 705 LPEGTPDSAFFDRKYKRSVMNWIVQSSAVDFLHLLLISMQWLCDTYQIDARFVISIHDEV 764

Query: 929 VFEVPEEEITTAS 941
            +   E++    +
Sbjct: 765 RYMCAEKDAPRLA 777



 Score = 42.0 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 70/216 (32%), Gaps = 38/216 (17%)

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE-PNLQNIPIKTDLGQ 731
            +RQ   I           I+     +      A T++ R        L N      +G 
Sbjct: 393 RYRQEVAIWYPEKSWKSGEIDMMEGAIAAAVVPAGTVSRRSVHKLWVTLTNQSTGHVIGT 452

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKIT------------PLYQVFEN------ 773
            I+    +P   KL+ AD    E   LA +                P    F N      
Sbjct: 453 GIKAMVQAPKGFKLVGADVDSQEQW-LAALYGDASAEKRLPLEHRVPGKTAFSNMMLAGS 511

Query: 774 ---SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL----RIPRS 826
              + D+H +VA ++            R HAK +N++ +YG         L     + ++
Sbjct: 512 KSDNTDLHSVVANQL---------KISRNHAKVLNYARLYGSGETHAGKHLMRVGGMKQT 562

Query: 827 EAADYIKRYFHRFP-GIHEYIE-KTKNFVRQNGYVE 860
           +A     + F        +Y++  +K     + Y+E
Sbjct: 563 DAEATASQLFKLTKGETAKYMKVDSKMNCLVDRYIE 598


>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1406

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 96/257 (37%), Gaps = 38/257 (14%)

Query: 392 FKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFI-DLSVHTSQDSTGKNTLTKE- 448
           F I T  +   + + I I A+   + K   +F+        +S   ++ +    ++ K+ 
Sbjct: 396 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMVKDA 455

Query: 449 --ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMRG-FEDIMLMSYVLDSGR 500
             I   L KF E + + + + HN  +D   +     ++ +++     D + +S  L    
Sbjct: 456 PSIEEILPKFLEFSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNTVLDTLELSRHLYKDL 515

Query: 501 SSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLL 555
            ++ + ++A+     L +  + +  +R ++    K  D   ++    +++ N IL+   +
Sbjct: 516 KNYKLDTLAEHLQVKLEHHHRAVDDARATAEIFIKTIDRLKELGVKKVKDINDILRESEV 575

Query: 556 LRPKL----------IVEKLLHVYERLDKPMIDV----------VSQMEITGIQIDQDLL 595
              KL              L ++YE + K  ++           +      G+ I     
Sbjct: 576 DIKKLPVYHVTILVKDQRGLRNLYEIISKSNLEYFHRTPRIPKSLLISMREGLIIGSAC- 634

Query: 596 KQVSAEISKNLLSLEEN 612
            +        L +LEE 
Sbjct: 635 -EQGEVFRAILSNLEEK 650


>gi|268533178|ref|XP_002631717.1| Hypothetical protein CBG20918 [Caenorhabditis briggsae]
          Length = 1022

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941
            +R+ +N  +Q SA D     +IS+    + +++  + ++ IHDE+ +   E++    +
Sbjct: 939 YKRSVMNWIVQSSAVDFLHLLLISMQWLCDTYQIDARFVISIHDEVRYMCAEKDAPRLA 997



 Score = 42.0 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 70/216 (32%), Gaps = 38/216 (17%)

Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE-PNLQNIPIKTDLGQ 731
            +RQ   I           I+     +      A T++ R        L N      +G 
Sbjct: 613 RYRQEVAIWYPEKSWKSGEIDMMEGAIAAAVVPAGTVSRRSVHKLWVTLTNQSTGHVIGT 672

Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKIT------------PLYQVFEN------ 773
            I+    +P   KL+ AD    E   LA +                P    F N      
Sbjct: 673 GIKAMVQAPKGFKLVGADVDSQEQW-LAALYGDASAEKRLPLEHRVPGKTAFSNMMLAGS 731

Query: 774 ---SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL----RIPRS 826
              + D+H +VA ++            R HAK +N++ +YG         L     + ++
Sbjct: 732 KSDNTDLHSVVANQL---------KISRNHAKVLNYARLYGSGETHAGKHLMRVGGMKQT 782

Query: 827 EAADYIKRYFHRFP-GIHEYIE-KTKNFVRQNGYVE 860
           +A     + F        +Y++  +K     + Y+E
Sbjct: 783 DAEATASQLFKLTKGETAKYMKVDSKMNCLVDRYIE 818


>gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu]
          Length = 375

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 61/194 (31%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
                     + T    +   +   I +         T   +      +     Q +   
Sbjct: 10  ACEQPLVFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTSLVNPGQPIPPFIQQLTGIS 69

Query: 443 NTLTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
           + + ++    + L    FE  +  L + HN  +D+  L     R G++        + +S
Sbjct: 70  DAMVRDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERIGLAFNPDVLCTVRLS 129

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    S H + ++ ++                +P         +  A+ +++++ Q W
Sbjct: 130 RALFPRESRHGLDALIERH-------------GLVP-------SARHRALADADLLWQFW 169

Query: 554 LLLRPKLIVEKLLH 567
             L   + +E+L  
Sbjct: 170 RQLHETVPLERLRD 183


>gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1406

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 96/257 (37%), Gaps = 38/257 (14%)

Query: 392 FKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFI-DLSVHTSQDSTGKNTLTKE- 448
           F I T  +   + + I I A+   + K   +F+        +S   ++ +    ++ K+ 
Sbjct: 396 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESMVKDA 455

Query: 449 --ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMRG-FEDIMLMSYVLDSGR 500
             I   L KF E + + + + HN  +D   +     ++ +++     D + +S  L    
Sbjct: 456 PSIEEILPKFLEFSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNTVLDTLELSRHLYKDL 515

Query: 501 SSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLL 555
            ++ + ++A+     L +  + +  +R ++    K  D   ++    +++ N IL+   +
Sbjct: 516 KNYKLDTLAEHLQVKLEHHHRAVDDARATAEIFIKTIDRLKELGVKKVKDINDILRESEV 575

Query: 556 LRPKL----------IVEKLLHVYERLDKPMIDV----------VSQMEITGIQIDQDLL 595
              KL              L ++YE + K  ++           +      G+ I     
Sbjct: 576 DIKKLPVYHVTILVKDQRGLRNLYEIISKSNLEYFHRTPRIPKSLLISMREGLIIGSAC- 634

Query: 596 KQVSAEISKNLLSLEEN 612
            +        L +LEE 
Sbjct: 635 -EQGEVFRAILSNLEEK 650


>gi|171742685|ref|ZP_02918492.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC
           27678]
 gi|283456244|ref|YP_003360808.1| ribonuclease D [Bifidobacterium dentium Bd1]
 gi|171278299|gb|EDT45960.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC
           27678]
 gi|283102878|gb|ADB09984.1| Ribonuclease D [Bifidobacterium dentium Bd1]
          Length = 433

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 12/196 (6%)

Query: 383 KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           +L++        + DT+ AF  +   +A    +L    + +        D  V   +   
Sbjct: 9   RLQSEPREGVPDVIDTLPAFRDYCDLLAAGTGSLAADAERASGYRYGHEDWLVQFKRTGA 68

Query: 441 GKNTLTKEILSYLKKFFEN-----EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L  + L+     + +          I H+   D       G+      D  + + +
Sbjct: 69  GIGLLDPQALAQAGADWNDFNRAVGDATWILHDSLQDLPGFADLGMEPHHLFDTEIAARL 128

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  ++++L   
Sbjct: 129 L--GMHRFGLAAVTEHFLGLT---LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEQR 183

Query: 556 LRPKLIVEKLLHVYER 571
           +R +L  +      E 
Sbjct: 184 MRTELKRQGKRDWAEE 199


>gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
 gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
          Length = 870

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 88/269 (32%), Gaps = 37/269 (13%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE-------TI 427
           +     + + E      F + +  +D    + I IA   L++K +   K E        +
Sbjct: 490 EKFSLLINEFEKENIIVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPV 549

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL------HRYG 480
                VH   D      + ++    LK+F E ++  + +GHN++YD  +L         G
Sbjct: 550 KDSYYVHGFSDEM-LQKIGEDKEKVLKEFVEYSKGSIIVGHNVQYDINILCSELERSNLG 608

Query: 481 I-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
               + F D + +      G  ++ + +++  + +          K     D + D    
Sbjct: 609 KPKFKTFYDTLDIYRRFYPGNINYKLENLSNVYDT----------KHKPSHDAMDDIIAT 658

Query: 540 EHAIENS------NVILQLWLLLRPKLIV-----EKLLHVYERLDKPMIDVVSQMEITGI 588
              +  +         ++   L+   L       +KL  +++  +      +    + G 
Sbjct: 659 GELLVRAINEKIRETSMERMALMSKHLKAFTAISKKLNELFKISESKRPYELVACVMNGF 718

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            I        + E    L  L     DL 
Sbjct: 719 NIKSMYAGDENKEKLNRLRDLYALFRDLD 747


>gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419]
          Length = 242

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 38/208 (18%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---------LSVHTSQDSTGK 442
           F   T  +D    + I I    L+ +  T   +               L+VH   D   K
Sbjct: 6   FDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGDRKVHPEALAVHGITDDFLK 65

Query: 443 NTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMRG---FEDIMLMS- 493
           +  +  EI   +  FF +     + HN  +D         R G+   G     D + ++ 
Sbjct: 66  DKPSFAEIAQEIVDFFGDAR--WVAHNATFDMGFINAEFERLGLPPVGSDRVIDTLSLAR 123

Query: 494 ----------------YVL-DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
                           Y + +S R+ H  A +  + L+    E++  R++++ +      
Sbjct: 124 RKHPMGPNSLDALCRRYGIDNSHRTRHG-ALLDSELLAEVYIEMIGGRQAALGLVMTETG 182

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK 564
                A +   +I+     LRP+L   +
Sbjct: 183 GRSLEADDGPVIIVGRERPLRPRLTEAE 210


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus
           kaustophilus HTA426]
          Length = 1444

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 27/223 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSVHTSQDS 439
           ++L       F + T  + A ++  I + A+   D +    F         LSV T + +
Sbjct: 422 RRLSEETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELT 481

Query: 440 TGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLVL------HRYGISMRGFE 487
              + + K      E+L+    +  +     + HN  +D   L         G       
Sbjct: 482 GITDEMVKDAPKPDEVLARFVDWAGDATL--VAHNASFDIGFLNTGLARMGRGKIANPVI 539

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D + ++  L     +H + ++ +K+      E+ +          I D++   H +    
Sbjct: 540 DTLELARFLYPDLKNHRLNTLCKKF----DIELTQ------HHRAIYDAEATGHLLMRLL 589

Query: 548 VILQLW-LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +   +L   +L          RL +P    +     TG++
Sbjct: 590 KEAEERGILFHDELNSRTHSEASYRLARPFHVTLLAQNETGLK 632


>gi|326483586|gb|EGE07596.1| DNA polymerase gamma [Trichophyton equinum CBS 127.97]
          Length = 1019

 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%)

Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
            +   +     + IN  IQ S  D     +IS+   +    L  ++ + +HDE+ + V E
Sbjct: 751 RRFINKGGFMTSRINWAIQSSGVDYLHLLIISMDYLIRRFNLDARLAITVHDEIRYVVRE 810

Query: 935 EEITTASQIIV 945
            +   A+  + 
Sbjct: 811 TDKYKAAMALQ 821


>gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica]
          Length = 420

 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 13/148 (8%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L+     S++  T  + +S    +D         E +  L + F N   +KI H  + D 
Sbjct: 282 LEHHRYRSYQGFTCLVQIS-SRQKDYILDPLAVWEDMYKLNEVFANPKIVKIFHGSRNDM 340

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIP 529
           L L R +G+ +    D    +  LD   +   +  + Q +         ++   R   IP
Sbjct: 341 LWLQRDFGVYVVNLFDTFFAAKKLD--LAKKSLDYLLQHYCKIRLDKRFQLADWRMRPIP 398

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLR 557
            + +       +A ++++ +L ++  LR
Sbjct: 399 PNML------RYARQDTHYLLYVYDRLR 420


>gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
 gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
          Length = 835

 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 27/247 (10%)

Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346
           R+   +  D A +E +++     E   +      +R      S+ SSL  + + + +   
Sbjct: 539 RLLGPFRGDPAELESLLVSPAGEEPLSLGETVRRNRGELWTRSRESSLEVRLALLQTSAA 598

Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS-K 405
                   L +      + D +      + +      L  +    F   T  +      K
Sbjct: 599 VLPRSGNGLIEGEPEFYDFDLFLPRPVLERVDLLRADLADLEYVVFDTETTGLQISQGDK 658

Query: 406 PIAIA--------------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
            ++I+                TL           T F  +  H   D+   N +  + + 
Sbjct: 659 VVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIEDHMVADAPSMNEVYPQFVK 718

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM--RGFEDIMLMSYVLDSGRSSHDI 505
           Y          + + HN  +DK  L       G+ +      D + +S  L SG   H +
Sbjct: 719 Y------AGDAVLVAHNAAFDKKCLDMAAAEAGLPLVENPILDTLFLSVGLHSGTEGHSL 772

Query: 506 ASIAQKW 512
            ++AQ+ 
Sbjct: 773 DAMAQRM 779


>gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4]
 gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type
           [Thermoanaerobacter tengcongensis MB4]
          Length = 1401

 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 39/192 (20%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDSTGKN 443
                 F I T  +   + + I I    +  K   DT        I +S   ++ +    
Sbjct: 385 EGEFVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDE 444

Query: 444 TLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMRG-FEDIMLMSY 494
           ++ K+   I   L KF E  +  + + HN  +D   +     + G+++     D + +S 
Sbjct: 445 SMVKDAPLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELSR 504

Query: 495 VLDSGRSSHDIASIAQ----KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
            L     ++ + ++A+    K L + R                        A+E++    
Sbjct: 505 HLYQDLKNYKLDTLAEFFEVKLLHHHR------------------------AVEDAKATA 540

Query: 551 QLWLLLRPKLIV 562
           ++++ +  KL  
Sbjct: 541 EIFIKMLEKLQE 552


>gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carboxydibrachium pacificum DSM 12653]
          Length = 1375

 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 39/192 (20%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDSTGKN 443
                 F I T  +   + + I I    +  K   DT        I +S   ++ +    
Sbjct: 385 EGEFVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDE 444

Query: 444 TLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMRG-FEDIMLMSY 494
           ++ K+   I   L KF E  +  + + HN  +D   +     + G+++     D + +S 
Sbjct: 445 SMVKDAPLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELSR 504

Query: 495 VLDSGRSSHDIASIAQ----KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
            L     ++ + ++A+    K L + R                        A+E++    
Sbjct: 505 HLYQDLKNYKLDTLAEFFEVKLLHHHR------------------------AVEDAKATA 540

Query: 551 QLWLLLRPKLIV 562
           ++++ +  KL  
Sbjct: 541 EIFIKMLEKLQE 552


>gi|322694691|gb|EFY86514.1| exonuclease [Metarhizium acridum CQMa 102]
          Length = 751

 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 120/365 (32%), Gaps = 61/365 (16%)

Query: 8   FLVDGSSFIYRAFY--ATPLLSRKHDGLPVNAIAGFCNMLWKL----LQNSRKESIASHF 61
             VD   +++RA Y  A  L   K     VNA      ML             + + S  
Sbjct: 27  LAVDAYGWLHRAAYSCAVELGQGKPTKRYVNAAMHRVRMLQHFGITPYMVFDGDYLPSKA 86

Query: 62  A-----VIFDYPAVTFRNEIYPDYKANR------------PKIPEMLLPQLPLVRLATQA 104
           A                N++    K ++            P++   L+ Q        + 
Sbjct: 87  ATENSRAKRREEKKKLANDLLKAGKTSQAAQEFQNCIDVTPEMASTLIQQ-------LKQ 139

Query: 105 FGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ-----LVSPTTCLYDTVK 159
            GIP +    +EAD  +          G    IIS D DL+      L++      + ++
Sbjct: 140 MGIPYVVAP-YEADAQLVYLERQGLVNG----IISDDSDLLVFGAKRLLTKLDQYGNCIE 194

Query: 160 EEKIDIEHVIKKWGIPPEKMVC-----LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + D     +   +            +  ++G   D + G+PG+G KTA  +L++  + 
Sbjct: 195 INRRDFCACRE---VSLTGWTDADFRRMAIMSG--CDYLDGLPGVGLKTAYRMLRKSKSP 249

Query: 215 ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTD---VPITIPLEHLI-LEDCNGP 270
           E ++    +   K+  EN L     A L              P    L HL  L+     
Sbjct: 250 ERVV-RLLQFNGKRISENYLTQFYQAEL-----TFLHQWVFCPKKRELVHLTELDGTRTA 303

Query: 271 RLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ 330
             + F+ A    +L   +A   D D     P+V+    ++ +     T+        TS 
Sbjct: 304 EEMPFIGAYVEPELARAIAKG-DVDPITKAPIVIATTPSKRRHSQTATQAQPPRKPITSY 362

Query: 331 FSSLS 335
           F   S
Sbjct: 363 FKGHS 367


>gi|238882475|gb|EEQ46113.1| hypothetical protein CAWG_04457 [Candida albicans WO-1]
          Length = 699

 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 108/333 (32%), Gaps = 79/333 (23%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHD----GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             +D   +++RA      L    +    G P      +   +   +Q      I  +F  
Sbjct: 27  LAIDTYGWLHRA------LVSCAEELCLGKPT---RNYITAILNKIQMLNHFGITPYF-- 75

Query: 64  IFD-----YPAVTFR---------NEIYPDY--KANRPKIPEMLL------PQLPLVRLA 101
           +FD         T R          E+   Y    NR    +  +       Q+    + 
Sbjct: 76  VFDGASLPTKQETNRERQLKRQEAKELAEKYIAANNRKLAYKQFMKAAYVTSQMAKSVMC 135

Query: 102 -TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM---------QLVSPT 151
                 I  I    +EAD  +     +   +G    I+S D DL+         +L    
Sbjct: 136 ELDNLSIKYIVAP-YEADPQMVYLEKMGIVDG----ILSEDSDLLIFGCKKLITKLKDDG 190

Query: 152 TCLYDTV-KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           TC+     K +K+     + ++    E++  +  L+G   D   G+PGIG KTA  L+++
Sbjct: 191 TCVEINRDKFDKVKEIPYLNQYN--MEQLRLVAMLSG--CDYTKGVPGIGLKTAFQLVRK 246

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARL-----------SRKLVMLRTDVPITIPL 259
           Y N   I+I    +  KK  +   +  + A L           S+KL            L
Sbjct: 247 YNNFTKIMIALRSM-GKKIPDTFSDEVKLANLAFQFQKVFDPTSQKLTT----------L 295

Query: 260 EHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
                +          L++     L + +    
Sbjct: 296 NEYPQDGTEVEADQGLLESCCGKTLTDEIYQQL 328


>gi|330988831|gb|EGH86934.1| excinuclease ABC subunit C [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331008144|gb|EGH88201.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 607

 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|306822549|ref|ZP_07455927.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
 gi|304554094|gb|EFM42003.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
          Length = 433

 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 12/196 (6%)

Query: 383 KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           +L++        + DT+ AF  +   +A    +L    + +        D  V   +   
Sbjct: 9   RLQSEPREGVPDVIDTLPAFRDYCDLLAAGTGSLAADAERASGYRYGHEDWLVQFKRTGA 68

Query: 441 GKNTLTKEILSYLKKFFEN-----EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L  + L+     + +          I H+   D       G+      D  + + +
Sbjct: 69  GIGLLDPQALAQAGADWNDFNRAVGDATWILHDSLQDLPGFADLGMEPHHLFDTEIAARL 128

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  ++++L   
Sbjct: 129 L--GMHRFGLAAVTEHFLGLT---LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEQR 183

Query: 556 LRPKLIVEKLLHVYER 571
           +R +L  +      E 
Sbjct: 184 MRTELKRQGKRDWAEE 199


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score = 43.5 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           L       F + T  + A +   I + A+   + +    F+        LS         
Sbjct: 416 LTEATYVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDRFERFANPHHPLSATTIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+L    ++  +   + + HN  +D       L + G+     G  D 
Sbjct: 476 TDDMVQNAPEISEVLRDFHEWMGD--SILVAHNASFDMGFLNMGLQKIGLEKAANGVIDT 533

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + +   L     +H + ++A+K+
Sbjct: 534 LELGRFLYPHMKNHRLNTLAKKF 556


>gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 1465

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHNLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|320167228|gb|EFW44127.1| DNA-repair protein rad13 [Capsaspora owczarzaki ATCC 30864]
          Length = 1235

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 13/163 (7%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--CLYD 156
            +   + FG+P +     EA+   A        +G     I+ D D+    +       ++
Sbjct: 894  QELLRLFGMPYLTAP-MEAEAQCAALDLAGITDGT----ITEDSDVFLFGARRVYRNFFN 948

Query: 157  TVKEEKIDIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
              K  +      I+ +  +  EK++ L  L G   D   G+  IG   A  +L ++ +L+
Sbjct: 949  PNKYAEFYASSAIESYLALDREKLIDLALLLG--SDYTSGVERIGPVLAMEILGDFPSLQ 1006

Query: 216  NILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258
                   + K      ++      + L RKL  +    PI+ P
Sbjct: 1007 EFATFLHQYKFATSDLDLDA---VSPLRRKLGKMCRKSPISPP 1046


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           L       F + T  + A +   I + A+   + +    F+        LS         
Sbjct: 416 LTEATYVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDRFERFANPHHPLSATTIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+L    ++  +   + + HN  +D       L + G+     G  D 
Sbjct: 476 TDDMVQNAPEISEVLRDFHEWMGD--SILVAHNASFDMGFLNMGLQKIGLEKAANGVIDT 533

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + +   L     +H + ++A+K+
Sbjct: 534 LELGRFLYPHMKNHRLNTLAKKF 556


>gi|289650302|ref|ZP_06481645.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330867008|gb|EGH01717.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330890124|gb|EGH22785.1| excinuclease ABC subunit C [Pseudomonas syringae pv. mori str.
           301020]
          Length = 607

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 1465

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHNLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
 gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
           13]
          Length = 870

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 89/269 (33%), Gaps = 37/269 (13%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE-------TI 427
           +     + + E      F + +  +D    + I IA   L++K +   K E        +
Sbjct: 490 EKFSLLINEFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPV 549

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL------HRYG 480
                VH   D      + ++    LK+F E ++  + +GHN++YD  +L         G
Sbjct: 550 KDSYYVHGFSDEM-LQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERSNLG 608

Query: 481 I-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
               + F D + +      G  ++ + ++++ + +          K     D + D    
Sbjct: 609 KPKFKTFYDTLDIYRRFYPGNINYKLENLSKVYDT----------KHKPSHDAMDDIIAT 658

Query: 540 EHAIENS------NVILQLWLLLRPKLIV-----EKLLHVYERLDKPMIDVVSQMEITGI 588
              +  +         ++   L+   L       +KL  +++  +      +    + G 
Sbjct: 659 GELLVRAINEKIRETSMERMTLMSKHLKAFTAISKKLNELFQIAESKRPYELVACVMNGF 718

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            I        + E    L  L     DL 
Sbjct: 719 NIKSMYAGDENKEKLNRLRDLYALFRDLD 747


>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
 gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
          Length = 1438

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKD---DTSFKVETIFIDLSVHTSQDS 439
           L+T     F I T  +    +K I I A+   D K+     +F      I  ++    + 
Sbjct: 416 LKTATYVVFDIETTGLSVTQNKIIEIAAVKMHDGKEVDRYATFVNPHERIPYNIQQLTNI 475

Query: 440 TGKNT-LTKEILSYLKKF--FENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDIM 490
             +      ++   +K+F  F  +  L + HN ++D       L   G+        D +
Sbjct: 476 NDEMVKDAPDVEPVMKEFVAFAGDAVL-VAHNARFDVGFIQATLRNMGLPEMTNPVLDTL 534

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            ++ +L     +H + ++  K+
Sbjct: 535 ELARLLFPTMKNHRLNTLTTKY 556


>gi|254173825|ref|ZP_04880497.1| 5' to 3' exonuclease, 5' flap endonuclease, RAD2/FEN1 family
           protein [Thermococcus sp. AM4]
 gi|214032517|gb|EEB73347.1| 5' to 3' exonuclease, 5' flap endonuclease, RAD2/FEN1 family
           protein [Thermococcus sp. AM4]
          Length = 339

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 102/318 (32%), Gaps = 90/318 (28%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAGFCNMLWKLLQNSRKESIASHF 61
           +D  +    A Y      R+ DG P         + ++GF    ++ +         ++ 
Sbjct: 26  IDAFN----AMYQFLSTIRQRDGTPLMDSKGRITSHLSGFF---YRTINLMEAGIKPAY- 77

Query: 62  AVIFDYPAVTFR------------------NEIY--------PDYKANRPKIPEMLLPQL 95
             +FD     F+                  +E            Y     K+ E L+   
Sbjct: 78  --VFDGEPPAFKRRELEKRREAREEAEEKWHEALERGDIEEAKKYAMRATKLNETLIEDA 135

Query: 96  PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCL 154
              +      G+P ++       +  A   Y+A K+   V    S D D +   +P    
Sbjct: 136 ---KKLLGLMGVPVVQAP----SEGEAQAAYMASKK--KVYASASQDYDSLLFGAPRLVR 186

Query: 155 YDT---------------VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPG 198
             T               VK E I +E V+K+ GI  EK++ L  L G   D  P GI G
Sbjct: 187 NLTITGRRKLPGKNVYVEVKPELIILEEVLKELGIDREKLIELAILVG--TDYNPGGIKG 244

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258
           IG K A  +++   +        S +     +E                    + P+T  
Sbjct: 245 IGPKKALTIVKRSKDPLAKYQKMSDVDLYAIKE-----------------FFLNPPVTDD 287

Query: 259 LEHLILEDCNGPRLISFL 276
            E L   + +   +I FL
Sbjct: 288 YE-LKWREPDEEGIIRFL 304


>gi|320324326|gb|EFW80405.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320328551|gb|EFW84553.1| excinuclease ABC subunit C [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 607

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|300781383|ref|ZP_07091237.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
 gi|300533090|gb|EFK54151.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
          Length = 233

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 72/198 (36%), Gaps = 34/198 (17%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET-IFIDLSVHTSQ----------- 437
            SF + T + +   ++ +  A+  +D    T+ +      +D+    ++           
Sbjct: 18  LSFDLETTSANPREARIVTSALVRIDGSSMTATETLADPGVDIPEQAARIHGITTEKARA 77

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--GISMRG-FEDIMLMSY 494
           +    + + +E ++ +K+ + +E    +  N  YD  VL       ++ G   D +L+  
Sbjct: 78  EGRPHDDVLQETVAAIKQAW-DEGLTLVVFNAPYDLSVLRALTGDFTVTGPVFDPLLIDR 136

Query: 495 VLDSGR--SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
            +D  R     ++ ++++ +                 +   +  +    A   + +  + 
Sbjct: 137 AMDRYRKGGKRNLGALSEFY----------------GVRLDNAHEATSDATAAARIAWKQ 180

Query: 553 WLLLRPKLIVEKLLHVYE 570
              + P+L   +L  + E
Sbjct: 181 VNKVWPQLSQMELDELME 198


>gi|253688324|ref|YP_003017514.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754902|gb|ACT12978.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 374

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 56/192 (29%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I +   +QQ   +       +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITSNIGLQQVCAQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         +    +E   K  H    D  V    +G     
Sbjct: 62  DWAP----------------------FQALLRDEQVTKFLHAGSEDLEVFLNAFGTLPVP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           F D   L +++      S+  A++   ++  T   + KS   +  + +    +  ++A  
Sbjct: 100 FIDTQILAAFLGKP--LSYGFAALVADYMGVT---LDKSESRTDWLARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVFYLLPMAAQL 166


>gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
 gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
          Length = 934

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 11/131 (8%)

Query: 389 SASFKIITDTMDAFHSKPIAIA--------ISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
             +  I T  +D      I I         +           K    FI      + D  
Sbjct: 7   YVAIDIETTGLDPEKDCIIEIGAVRFSNRRVEAEWSSLIKPTKNIPSFITQLTGITNDMV 66

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-SMRGFEDIMLMSYVLDSG 499
            K    ++++  L  F  N     +GHNI++D   L +  I       D   ++ VL   
Sbjct: 67  RKAPTIQDVIGDLAHFVGN--CPIVGHNIRFDLSFLQKQHILWNNHVIDTYELASVLLPT 124

Query: 500 RSSHDIASIAQ 510
            S +++  +AQ
Sbjct: 125 ASRYNLGVLAQ 135


>gi|321252528|ref|XP_003192437.1| exonuclease [Cryptococcus gattii WM276]
 gi|317458905|gb|ADV20650.1| Exonuclease, putative [Cryptococcus gattii WM276]
          Length = 1015

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 21/158 (13%)

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
            E    Y       PEM       +  A +A  +  +    +EAD  +       E+EG+
Sbjct: 113 KEAKEAYTRCVDVTPEMAYQ----LIKALRAENVDYVVAP-YEADAQLCFL----EREGY 163

Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPEKMVCLQ----- 183
              II+ D DL+              ++      I  + + K    P      +      
Sbjct: 164 VDGIITEDSDLLVFGCKRASRVIFKLDKDGQCVWIHRDRLAKVREFPMHGWTDMHFRRMA 223

Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
            L+G   D +  IPGIG KTA  L++ + ++E +L + 
Sbjct: 224 MLSG--CDYLDSIPGIGIKTAHRLMRRFNSVEKLLQHI 259


>gi|294055851|ref|YP_003549509.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
 gi|293615184|gb|ADE55339.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
          Length = 386

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 22/124 (17%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T+ +++ V++ +  G+                         D+    +  V  +   
Sbjct: 2   ITTTEALREAVRRAQDAGAVGVDTEF----------------VWDRTYYPTLGVVQLGYP 45

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                  D+        E  S L +   + + +KI H+ + D  +L R  G   +   D 
Sbjct: 46  DGHCELIDAPEI-----EDWSPLAELMSDPNVVKILHDAQQDLTILRRVCGSDPKTIFDT 100

Query: 490 MLMS 493
            L +
Sbjct: 101 QLTA 104


>gi|271500522|ref|YP_003333547.1| ribonuclease D [Dickeya dadantii Ech586]
 gi|270344077|gb|ACZ76842.1| ribonuclease D [Dickeya dadantii Ech586]
          Length = 373

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 55/194 (28%), Gaps = 27/194 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I   + +         +   +          ++ +   I +   D           
Sbjct: 2   NYQLITTDEGLSAVCALACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLS-------- 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L++   +                +   +N    K  H    D  V    +G     
Sbjct: 54  LIDPLAISNWEP--------------FRALLQNPQVTKYLHAGSEDLEVFLNAFGCLPSP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           F D  +++        S+  A++   +       + KS   +  + +    +  ++A  +
Sbjct: 100 FIDTQILA-AFRGKPLSYGFAALVADYRQIV---LDKSESRTDWLARPLSEKQCQYAAAD 155

Query: 546 SNVILQLWLLLRPK 559
              +L +  +L  +
Sbjct: 156 VFYLLPVARVLVEE 169


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 20/172 (11%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLS------VH 434
            L+      F + T  + A +   I I A+   D +   +F+        LS       H
Sbjct: 421 HLDEATYVVFDVETTGLSAVYDTIIEIAAVKIQDGEVVDTFERFANPGRPLSNTIIELTH 480

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGI--SMRGFED 488
            + D         E+L    ++  +   + + HN  +D       L + G+  S     D
Sbjct: 481 ITDDMLKDAPDISEVLKEYNEWIGDA--VLVAHNASFDIGFLNVGLKKAGLPKSNNPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDS 536
            + +   L     ++ + ++A+K+      + R          I +  + D+
Sbjct: 539 TLELGRFLYPDFKNYRLNTLAKKFNVELTQHHRAIYDTEATGQIFLKMLKDA 590


>gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232]
 gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232]
          Length = 1465

 Score = 43.5 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T +   G   L   +L   + F ++   + + HN  +D   ++    R+ +    +   D
Sbjct: 482 TDKHLQGAKPLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHNLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|309801464|ref|ZP_07695591.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
 gi|308221979|gb|EFO78264.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
          Length = 430

 Score = 43.5 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 12/196 (6%)

Query: 383 KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           +L++        + DT+ AF  +   +A    +L    + +        D  V   +   
Sbjct: 6   RLQSEPREGVPDVIDTLPAFRDYCDLLAAGTGSLAADAERASGYRYGHEDWLVQFKRTGA 65

Query: 441 GKNTLTKEILSYLKKFFEN-----EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L  + L+     + +          I H+   D       G+      D  + + +
Sbjct: 66  GIGLLDPQALAQAGADWNDFNRAVGDATWILHDSLQDLPGFADLGMEPHHLFDTEIAARL 125

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  ++++L   
Sbjct: 126 L--GMHRFGLAAVTEHFLGLT---LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEQR 180

Query: 556 LRPKLIVEKLLHVYER 571
           +R +L  +      E 
Sbjct: 181 MRTELKRQGKRDWAEE 196


>gi|197935873|ref|YP_002213709.1| DNA polymerase [Ralstonia phage RSB1]
 gi|197927036|dbj|BAG70378.1| DNA polymerase [Ralstonia phage RSB1]
          Length = 323

 Score = 43.5 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIK- 170
           EADD  A   Y +      V   + DKD+  L        D  +        D+   I  
Sbjct: 138 EADDGFAKAAYESPAPADLVAHFTADKDMRMLPGIHLGWKDFTRVVVPAGAYDVVGEIDG 197

Query: 171 -KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
            ++G    K   +Q L GD+ DNI GIPG+G K +A  L 
Sbjct: 198 KQYG---HKWFWMQCLHGDTADNIGGIPGVGEKGSAKSLA 234


>gi|298486859|ref|ZP_07004915.1| Excinuclease ABC subunit C [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158726|gb|EFH99790.1| Excinuclease ABC subunit C [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 607

 Score = 43.5 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|71733411|ref|YP_274534.1| excinuclease ABC subunit C [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|92058693|sp|Q48J96|UVRC_PSE14 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|71553964|gb|AAZ33175.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 607

 Score = 43.5 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|307688054|ref|ZP_07630500.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 38

 Score = 43.5 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 90  MLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127
            L  Q+  +    +A G+P + + G EADD+I T    
Sbjct: 1   DLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLARE 38


>gi|238650864|ref|YP_002916719.1| ribonuclease D [Rickettsia peacockii str. Rustic]
 gi|238624962|gb|ACR47668.1| ribonuclease D [Rickettsia peacockii str. Rustic]
          Length = 281

 Score = 43.5 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 75/212 (35%), Gaps = 27/212 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N K ++++   L      S     +    ++++      S +  K +    +    
Sbjct: 2   QIIDNQKTLEEFCNWLANKACLSIDTEFERRYTYYTQL-----SIIQVKAEEYCGI---- 52

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFE 487
                         + L+   L+   K   + +  KI H  + D  + +    ++     
Sbjct: 53  -------------IDALSNLDLNIFNKLLADNNITKIFHAPREDLEIFYNLFKTLPANVF 99

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + + +   G+       +  K +  T   I K+ + S  + +   S +  +A+ +  
Sbjct: 100 DIQIAANICGFGKQL-SYDDLCYKLIGIT---IDKTHQKSNWLKRPITSDMLNYAMLDVE 155

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            + +++  L   ++   L + Y+     ++DV
Sbjct: 156 YLYKIYKELNNIIVRNNLTNKYQTTLSALLDV 187


>gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e]
 gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e]
          Length = 306

 Score = 43.5 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           ++G + T    +   +   + + +    +   A    +Q    D+   AM++V       
Sbjct: 196 EDGRINTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAG---- 251

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
                ++L +HDELV E P+    T ++ +   M    LP+     PL   
Sbjct: 252 --GYPIVLSVHDELVCETPDTSDYTVAE-LEKLM--CALPEWADGFPLVAE 297


>gi|108862005|ref|YP_654121.1| 20 [Enterobacteria phage K1-5]
 gi|40787091|gb|AAR90062.1| 20 [Enterobacteria phage K1-5]
          Length = 342

 Score = 43.5 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 38/183 (20%)

Query: 67  YPAVTFRNEIY--PDYKANRP-KIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
                FR  +     YK  R  + P         +     A     I   G EADD+++ 
Sbjct: 98  KSEANFRVRLAFTKPYKGQRKTEKPPFFYELREHLLEVHGA-----ILADGEEADDLMSI 152

Query: 124 YT----YIAEKEGF--------------AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165
                    +++                   I+S DKDLM  + P   L    +++ ++ 
Sbjct: 153 AQWDSHRRFQQDTGNEFPIGSPEHKAFSDTCIVSLDKDLM--IVPGWHLQPGQEKKWVEP 210

Query: 166 EHVIKKWGIPPEKMVCLQA----------LTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
              ++       ++  L+           + GD IDN  GIPG G K A  LL++    +
Sbjct: 211 MGWLELRRKANGQVKDLKGAGLMFHYAQMIIGDDIDNYAGIPGRGAKYAYDLLKDCKTEK 270

Query: 216 NIL 218
            + 
Sbjct: 271 ELY 273


>gi|21356549|ref|NP_650075.1| CG6744 [Drosophila melanogaster]
 gi|10726453|gb|AAF54639.2| CG6744 [Drosophila melanogaster]
 gi|19528113|gb|AAL90171.1| AT25352p [Drosophila melanogaster]
          Length = 583

 Score = 43.5 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
           LS H    +  +    K+I   L++  E++  +K+G   + D + L H YG+ +    D 
Sbjct: 101 LSSHRGLCALFRLCHMKQIPQDLRELLEDDSVIKVGVAPQEDAMKLSHDYGVGVASTLD- 159

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            L    + +G     +  +++  L+YT  +  +   S+     +   Q+ ++A  ++ + 
Sbjct: 160 -LRFLCVMAGHKPEGLGKLSKTHLNYTLDKHWRLACSNWEAKTLEPKQL-DYAANDALMA 217

Query: 550 LQLWLLLRPKLI 561
           + ++  L   L 
Sbjct: 218 VAIYQKLCRDLQ 229


>gi|190347330|gb|EDK39579.2| hypothetical protein PGUG_03677 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 635

 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           + +   A  +  +    +EAD  +     I   +G    I+S D DL+            
Sbjct: 184 IMVELDARKVKYVVAP-YEADPQMVYLEKIGAVDG----ILSEDSDLLIFGCQRLITKLN 238

Query: 158 VKEE--KIDIEHVIKKWGI------PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
              E   ID  +  K   I        +++  +  L G   D   GIPGIG KTA  L+ 
Sbjct: 239 DYGECVVIDRANFPKVKKIPQLSSYTQQQLRLVAMLAG--CDYTKGIPGIGLKTAFTLVW 296

Query: 210 EYGNLENILINASRIKQKKRRENILE---YAETARLSRKL 246
           ++G+L ++L       + K  +   +    A+ A   +K+
Sbjct: 297 KHGDLNSVLSALD--AEGKVPDTFADEVFNADLAFQFQKV 334


>gi|195500059|ref|XP_002097212.1| GE24622 [Drosophila yakuba]
 gi|194183313|gb|EDW96924.1| GE24622 [Drosophila yakuba]
          Length = 583

 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
           LS H    +  +    K+I   L+   E++  +K+G   + D + L H YG+ +    D 
Sbjct: 101 LSSHRGLCALFRLCHMKQIPKDLRDLLEDDAVIKVGVAPQEDAIKLSHDYGVGVASTLD- 159

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            L    + +G     +  +++  L+YT  +  +   S+     +   Q+ ++A  ++ + 
Sbjct: 160 -LRFLCVMAGHKPEGLGKLSKTHLNYTLDKHWRLACSNWEAKNLEPKQL-DYAANDALMA 217

Query: 550 LQLWLLLRPKLI 561
           + ++  L   L 
Sbjct: 218 VAIYQKLCRDLQ 229


>gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7]
 gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11]
          Length = 267

 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914
           ++G V T    +   +   + + +    +   A    +Q    D+        +  L   
Sbjct: 157 EDGRVNTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQAFCRDLLA------YAMLNAE 210

Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965
                ++L +HDELV E P+    T ++ +   M    LP+     PL   
Sbjct: 211 AGGYPIVLSVHDELVCETPDTPDYTVAE-LEKLM--CALPEWAEGFPLVAE 258


>gi|94499665|ref|ZP_01306202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanobacter sp. RED65]
 gi|94428419|gb|EAT13392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanobacter sp. RED65]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 26/185 (14%)

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIP 108
           ++       A ++  +F++           +YKA R   P++L  +    +       I 
Sbjct: 70  IKLHSANFAAEYWDNVFEH--------FLEEYKAGRTPNPDILCNREIKFKAFLDYAKI- 120

Query: 109 AIEIQGFEADDIIAT--YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
                     D IAT  Y    EK+G    +   D +  Q         D +K+    + 
Sbjct: 121 -------LGADYIATGHYVRRYEKDGSTYLLKGLDNNKDQSYFLHAVGEDEIKQTLFPVG 173

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            + K       ++   Q L      +  GI  IG +     L++Y     I      IK 
Sbjct: 174 ELEKP---EVRRIAEEQGLATAKKKDSTGICFIGERRFKDFLKQY-----IPAQPGTIKT 225

Query: 227 KKRRE 231
            +  E
Sbjct: 226 PEGEE 230


>gi|330958463|gb|EGH58723.1| excinuclease ABC subunit C [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 607

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|290994416|ref|XP_002679828.1| Rab-GAP [Naegleria gruberi]
 gi|284093446|gb|EFC47084.1| Rab-GAP [Naegleria gruberi]
          Length = 534

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 60/387 (15%), Positives = 128/387 (33%), Gaps = 74/387 (19%)

Query: 254 PITIPLEHLILEDCNGPRLISFLKALEFTKLINR----------VATTYDCDAANIEPVV 303
            +  P+EH  L      +L   L       LI            +  T+  D  + +P  
Sbjct: 5   DVPNPVEHFGLSKEQKEQL-DLLSNYHKQNLITDKDFEKYKQNIIDGTFKLDEEDDDPFH 63

Query: 304 L-----------DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
           L           D    +N   +  T  + +++   ++ S      +  N+  T      
Sbjct: 64  LMSSSSSDDDEEDDTNKDNNNHSSSTANNINSSNGKNEKSLEKMDETTNNAPSTSSSSVG 123

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           + +   +    +  +  +I    +   +V+K ++ G+      T  ++   +KP+ ++  
Sbjct: 124 DGVAAGNVGVTSAVAVAQIQVDVEQVDFVRK-DSSGTIGIATKTLDLEIMEAKPVDVSKK 182

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
            L+              DLS     D  G     KE+    K F    +  KI    K  
Sbjct: 183 YLEN----------YGFDLS-----DDDGNVRDMKELFEKHKDF----NAKKIESQRKRW 223

Query: 473 KLVLHRYGISMRGFEDIMLMSY----VLDSGRSSHDIASIAQK----------------- 511
           +  + ++ I  +GF    L  Y    +      S+D   + +K                 
Sbjct: 224 QEFIQKHNIGAKGF--TTLEEYEQQRIFHFIEESNDFKKLVRKGIPMEYRAVMWYIISGA 281

Query: 512 ---WLSYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP---KLIVEK 564
              +L++    + LK +  +IPID+    +      ++ +         +    ++ +  
Sbjct: 282 NYQYLTHKDIFDNLKEKALAIPIDEREKDKNFVCICKDVDRTFPTHPFFKDPHNQIALRN 341

Query: 565 LLHVYERLDKPMIDVVSQME-ITGIQI 590
           +L++Y  L  P +     M  + GI +
Sbjct: 342 VLYLY-SLHNPKVGYCQSMNFLAGIML 367


>gi|293192610|ref|ZP_06609564.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
 gi|292820117|gb|EFF79114.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
          Length = 414

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 68/199 (34%), Gaps = 13/199 (6%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
           D  + + +      A      D   A H+     A   LD +    F          V  
Sbjct: 15  DNPELIAQPRGGTPAVIDTQKDLEAAAHALSAGSAPIALDVERAQGF--RYGSDPYLVQI 72

Query: 436 SQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLM 492
            ++  G   +    L   S L+   E+   + + H+   D   L + G+      D  + 
Sbjct: 73  RREDVGTFLIDTHALPDLSVLQPGVED---VWLLHDCLQDLPNLRQVGLRPSALFDTEIA 129

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           + ++  G     +A++ ++ L      ++K  ++S    +    +   +A  +  ++ +L
Sbjct: 130 ARLI--GLERFGLAAVVEQVLGLG---LVKDHQASDWSVRPLPKEWLRYAALDVELLTEL 184

Query: 553 WLLLRPKLIVEKLLHVYER 571
           +  L  +L         ++
Sbjct: 185 YYRLSKRLDEMGRWEWAQQ 203


>gi|195577623|ref|XP_002078668.1| GD23543 [Drosophila simulans]
 gi|194190677|gb|EDX04253.1| GD23543 [Drosophila simulans]
          Length = 1235

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 89/309 (28%), Gaps = 44/309 (14%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 862  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATDLTHGT--ITDDSDIWLFGGRTVYKNFF 916

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 917  AQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGQ 974

Query: 215  ENILINASRIKQKKRRENILEYAE--------------TARLS--RKL------------ 246
            +    N   I  +   + ++++ +              +ARLS  +KL            
Sbjct: 975  DG---NGPGICNQSVLQTLIKFRDWWQAHKSSNLPPGSSARLSLRKKLKNIELHEGFPSG 1031

Query: 247  --VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
              V       I    +       +   +        F    ++           I    +
Sbjct: 1032 AVVEAYLAPTIDDNRDAFSWGTPDVESIRE-FTRKSFGWTTSKTDDILMPVMKKINEKKI 1090

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              +            + +    K  Q +          + + P+K+   R  K +    +
Sbjct: 1091 QGSIRNYFTAKSALRVQQPNVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDD 1150

Query: 365  NDSYTKIVN 373
            + +   +  
Sbjct: 1151 DLAIADVAT 1159


>gi|170117083|ref|XP_001889730.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164635310|gb|EDQ99619.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1125

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 132/383 (34%), Gaps = 41/383 (10%)

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHF-- 462
           +A+      +  D + K+   +++ SV +      K   +++   L+YL+++    +   
Sbjct: 346 VALMYKYKTRGGDENVKLALRYLEFSVKSLPAGDEKIPHSQKNLALAYLQRYRNEGNIED 405

Query: 463 LKIGHN-IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           LK   + +K     +      + GF D +  +Y+L       D+  I+     Y      
Sbjct: 406 LKQAQDHLKQALGAIQPTDPLLYGFHDSLAAAYLLY-FDQFGDLHYISLALDQY------ 458

Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMI 577
              K ++     +  ++       +N     +  L       L ++  + + + +     
Sbjct: 459 ---KLAVAFISPTSMELSHCEHNIANCYASRYKRLHDHDDLDLAIQYSMQLLQHMSTNHQ 515

Query: 578 DV-VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636
           D+  ++  ++ +  D+  L+   A++   +  LE    D  GE  N S PK L D+ F  
Sbjct: 516 DISTAKSILSSLLHDKFKLQNEVADLDSAMK-LEREALDAVGET-NPSQPKLLHDLAFLH 573

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI-----KSTYADSLPN- 690
           L            +    +D+  +     P+++  LE    + +       T A  L   
Sbjct: 574 L-----------AYFEYTKDITHLEAAI-PLMEKCLEMAHETDLDSPVYHHTLAVMLGKL 621

Query: 691 -HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749
             ++ +   ++T   + +       + E  L  +    D    I       P    +S +
Sbjct: 622 WMVDGKIDWIYTCIKVCAIAINHARTDESILPMLYHLIDKSFSIICIHSQAPNNVSVSQE 681

Query: 750 YSQIELRILAHIAKITPLYQVFE 772
            S +E    A       L   F 
Sbjct: 682 VSAVEDAYCALYYYRASLTSSFA 704


>gi|110805403|ref|YP_688923.1| ribonuclease D [Shigella flexneri 5 str. 8401]
 gi|110614951|gb|ABF03618.1| RNase D, processes tRNA precursor [Shigella flexneri 5 str. 8401]
 gi|281600843|gb|ADA73827.1| RNase D [Shigella flexneri 2002017]
 gi|332759595|gb|EGJ89901.1| ribonuclease D [Shigella flexneri K-671]
 gi|333018392|gb|EGK37691.1| ribonuclease D [Shigella flexneri K-304]
          Length = 375

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score = 43.1 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 27/223 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSVHTSQDS 439
           ++L       F + T  + A ++  I + A+   D +    F +       LSV T + +
Sbjct: 422 RRLADETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMLFANPGHPLSVTTMELT 481

Query: 440 TGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLVLHR------YGISMRGFE 487
              + + K      E+L+    +  +     + HN  +D   L+        G       
Sbjct: 482 GITDEMVKDAPKPDEVLARFVDWAGDATL--VAHNASFDIGFLNAGLARMGRGKIANPVI 539

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D + ++  L     +H + ++ +K+      E+ +          I D++   H +    
Sbjct: 540 DTLELARFLYPDLKNHRLNTLCKKF----DIELTQ------HHRAIYDAEATGHLLMRLL 589

Query: 548 VILQLW-LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
              +   +L   +L          RL +P    +     TG++
Sbjct: 590 KEAEERGILFHDELNSRTHSEASYRLARPFHVTLLAQNETGLK 632


>gi|281416302|ref|YP_003347542.1| exonuclease [Klebsiella phage KP32]
 gi|262410421|gb|ACY66686.1| exonuclease [Klebsiella phage KP32]
          Length = 301

 Score = 43.1 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 15/164 (9%)

Query: 49  LQNSRKESIASHFAVIFDYPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107
            +  +K    +   + F    V +R  +  P YK NR  + + +      +    + +  
Sbjct: 69  YKGRKKAWKNADVVLAF-TDRVNWRKLLVDPTYKENRAVVKKPVGY-FEFLEYVFETYT- 125

Query: 108 PAIEIQGFEADDIIATY-TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166
             +     E DD++    +           ++S DKD    +     L+ T     +  +
Sbjct: 126 -CVLEPQLEGDDVMGIIGSNPLPYHYEKAVLVSCDKDFKT-IPDCDFLWCTTGNILVQTQ 183

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
                W +        Q + GD  D   GIPG G  TA   L+E
Sbjct: 184 ETADYWHL-------FQTIKGDITDGYGGIPGWGD-TAEDFLKE 219


>gi|54310468|ref|YP_131488.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914911|emb|CAG21686.1| putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 207

 Score = 43.1 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 16/124 (12%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y + +      Q   + +     S    T ++D   ++ + IA + +  K++     ++I
Sbjct: 9   YQRKLKDNPYGQLFNRYQGDELVSVDCETTSLDPHSAELVTIAATVI--KNNRILTSKSI 66

Query: 428 FIDLSVHTSQDSTG------------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            + L    S D+                   KE L+ L  F  N     +G++I+YDK +
Sbjct: 67  HLTLRAPISLDANSITIHRIRHQDLRAGLGEKEALTTLLNFIGN--RPLVGYHIRYDKTI 124

Query: 476 LHRY 479
           L RY
Sbjct: 125 LDRY 128


>gi|189207443|ref|XP_001940055.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976148|gb|EDU42774.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 216

 Score = 43.1 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 13/163 (7%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T+ I   V +L    +             +     + +         +  ++T+ 
Sbjct: 7   EIIDMTEQIGDLVDELVACHAPPIPFSPT----MYIDLEGVNLCREGSVLIFTLLIDTVM 62

Query: 429 ID-----LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGIS 482
                  + VHT           K+    L    ++E   K+  +++ D   L   + ++
Sbjct: 63  PPGRVYLIDVHTLGAQAFNTAGAKQ--KTLIDILQDEKIPKVFFDVRNDSDALFAHFDVA 120

Query: 483 MRGFEDIMLM-SYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           ++G  D+ LM S    +  S   ++ +A+   +Y         
Sbjct: 121 LQGVGDVQLMESATWKTTVSLKFLSGLAKCVETYQPISYGSGG 163


>gi|326482509|gb|EGE06519.1| hypothetical protein TEQG_05519 [Trichophyton equinum CBS 127.97]
          Length = 768

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 46/261 (17%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
             +FD P         PDYK  R         Q+ L R   + F  P     G EA+   
Sbjct: 75  IFVFDGPHR-------PDYKRGRLVSKNAAAAQIELSRKLIELFSYPCHMAPG-EAE--- 123

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--------EKIDIEHVIKKWG 173
                  ++ G    ++S D D + +      L +  K           +D+ +   + G
Sbjct: 124 -AECAKLQQAGVVDAVMSNDVDAL-MFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDG 181

Query: 174 -----IPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL-QEYGNLENILINASRI-- 224
                +  + MV +  L+G   D  P G+   G K A  +    +G  E++      +  
Sbjct: 182 DSKVTLDTKGMVLVALLSG--GDYSPAGVALCGPKLAVEIARAGFG--EDLFKITQDLLS 237

Query: 225 --KQKKRRENILEYAETARLSRKL--------VMLRTDVPITIPLEHLILEDCNGPRLIS 274
               KK  E + E+ E  RL  +L              V I     +L         + S
Sbjct: 238 GRSTKKAEEALCEWRE--RLQYELQSNESGYFKTKHKAVKIPADFPNLAALRSCVDPVTS 295

Query: 275 FLKALEFTKLINRVATTYDCD 295
            LK ++  + ++      D D
Sbjct: 296 SLKDMDTLRRLDIWGRRVDVD 316


>gi|282856872|ref|ZP_06266130.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens
           W5455]
 gi|282585290|gb|EFB90600.1| DNA polymerase III PolC-type (PolIII) [Pyramidobacter piscolens
           W5455]
          Length = 196

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 16/141 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSF-----KVETIFIDLSVHTSQ 437
           +   G  +  I T  +       + I A+         SF         I  D+S     
Sbjct: 5   IAGTGFTALDIETTGLSPAFCGIVEIAALKIFPDGSQRSFQMLVDPGRPIPRDVSAIHGI 64

Query: 438 DSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL------HRYGISMRGFEDI 489
           D           + ++ L  F        + HN  +D   L       R         D 
Sbjct: 65  DDAMVRGQPSAADAVAALVSFV--GPSPLVLHNAPFDMSFLNPVVRRQRLQWDSPAVFDT 122

Query: 490 MLMSYVLDSGRSSHDIASIAQ 510
           + +S     G +S+ + S+++
Sbjct: 123 LRLSRQAFPGLNSYSLESLSR 143


>gi|237800462|ref|ZP_04588923.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023321|gb|EGI03378.1| excinuclease ABC subunit C [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 218

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 60  YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 111

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 112 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 163

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 164 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 211


>gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 864

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 18/163 (11%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA------ISTLDQ 416
           ++  + + +       + V K E      F + T  +D    + I +A         +D+
Sbjct: 474 VDFANTSTLKYRDPFARLVNKFEQNKLVVFDVETTGLDTTKDEIIELAALKAGKDGVVDE 533

Query: 417 KDDTSFKVETIFIDLSVHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474
             +     + +     VH   D     +    ++ L+    F ++     +GHN+ YD  
Sbjct: 534 FHEYLRNSKPVGESFQVHGISDQVLLEQGKPPEKSLASFTNFIDDCDL--VGHNVNYDIT 591

Query: 475 V-------LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           +       L    + + G+ D + +S         +++ S+ +
Sbjct: 592 MVENQCKKLLNQDLELHGY-DTVDISRRYFPRLEKYNLESLCE 633


>gi|313887168|ref|ZP_07820864.1| 3'-5' exonuclease [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300419|ref|YP_004442340.1| 3'-5' exonuclease [Porphyromonas asaccharolytica DSM 20707]
 gi|312923397|gb|EFR34210.1| 3'-5' exonuclease [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177482|gb|AEE13172.1| 3'-5' exonuclease [Porphyromonas asaccharolytica DSM 20707]
          Length = 206

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 12/186 (6%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           + KL         ++ D++    S   A+    +   D  S  V   +   SV   Q S+
Sbjct: 10  IGKLAKATFTGEIVVVDSLPQVESAVAALEQCAIIGMDTESKPVFKKYERQSVALIQLSS 69

Query: 441 GKNTLTKEILS-----YLKKFFENEHFLKIGHNIKYDKLVLHRY--GISMRGFEDIMLMS 493
                   I        L+   E E  LK+G ++  D+  L R+   +  +GF D+    
Sbjct: 70  ESCCYLFRINKIGIPPRLQGLLEREDILKVGLDLCGDRRQLRRFSPELHPQGFVDLQ--- 126

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L      HD+  + + +     ++I K  + +           Q +A  ++   L+++
Sbjct: 127 -RLTPAYGIHDLG-LQKIYAILFGEKISKRAQLTNWEAATLTPAQQSYAALDAYACLRIY 184

Query: 554 LLLRPK 559
             L  +
Sbjct: 185 HRLESE 190


>gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
 gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
          Length = 187

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 42/148 (28%), Gaps = 20/148 (13%)

Query: 387 IGSASFKIITDTMDAFHSKPIAI----------AISTLDQKDDTSFKVETIFIDLSVHTS 436
           +  A+    T       +  + +          + S L +           FID+    +
Sbjct: 1   MKWAAIDFETANPSPMSACAVGLTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDI-HGIT 59

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIM 490
            D         ++   LK +   +  +   HN  +D  VL       R  +    +   +
Sbjct: 60  PDQVADAPFFPKVYEQLKPWL--DGGVLCAHNAGFDMKVLASCCSLYRLELPDAPYFCTV 117

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRK 518
            +S  +      H +  +   ++     
Sbjct: 118 KLSRKVYPYLKHHRLNDVC-DYMGIQLD 144


>gi|308495624|ref|XP_003110000.1| hypothetical protein CRE_06484 [Caenorhabditis remanei]
 gi|308244837|gb|EFO88789.1| hypothetical protein CRE_06484 [Caenorhabditis remanei]
          Length = 1090

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 51/186 (27%)

Query: 707 STMTGRLASLE-PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765
            T++ R        L N      +G  I+    +P   +L+ AD    E   LA +    
Sbjct: 647 GTVSRRSVHKLWVTLTNQSTGHVIGTGIKAMVQAPEGFRLVGADVDSQEQW-LAALYGDA 705

Query: 766 ------------PLYQVFEN---------SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804
                       P    F N         + D+H +VA ++            R HAK +
Sbjct: 706 SAEKRLPLELRVPGKTAFSNMMLAGSKSDNTDLHSVVANQL---------KISRNHAKVL 756

Query: 805 NFSIIYGISPFRLATQL-------------------RIPRSEAADYIKRYFHRFPGIHEY 845
           N++ +YG         L                   ++ + E A Y+K        + +Y
Sbjct: 757 NYARLYGSGETHAGKHLMRIGGMKQIDAEATAAQLFKLTKGETAKYMKVDLKMNCFVDKY 816

Query: 846 IEKTKN 851
           IE+T  
Sbjct: 817 IEETAK 822


>gi|16125948|ref|NP_420512.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221234713|ref|YP_002517149.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13423116|gb|AAK23680.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|220963885|gb|ACL95241.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 389

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 26/209 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T ++  +   L      +          +  K   I +++  Q+         + 
Sbjct: 2   KLITTTAELAAFCNGLAGEPFVAVDTEFMRETTYWPKLCLIQVASPTQE--------AVI 53

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
             L+ +               L  L     +E  LK+ H  + D  + +      +   D
Sbjct: 54  DPLADNID-------------LEPLLVVMRDERILKVFHAARQDVEIFNNLKAMPKPLFD 100

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             +       G       ++ ++ L   R EI KS + +    +        +A+ +   
Sbjct: 101 TQVAGMAAGFGEQI-AYDALVRQML---RIEIDKSSRFTDWARRPLTDAQLSYALADVTH 156

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           + +L+ +LR +L     L   E  +   I
Sbjct: 157 LAKLFPILRERLETSGRLAWVEE-EMTAI 184


>gi|89069870|ref|ZP_01157204.1| ribonuclease D [Oceanicola granulosus HTCC2516]
 gi|89044546|gb|EAR50665.1| ribonuclease D [Oceanicola granulosus HTCC2516]
          Length = 385

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 62/194 (31%), Gaps = 22/194 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T+D+  +  +       +          ++     + ++        +  V+ +  
Sbjct: 3   TITTTEDLATFCAEAAKAPYVTVDTEFLRERTYYPHLCLVQLAYPGDGKTDAVLVDPLEG 62

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFED 488
            L                  L+ L   F++   +K+ H  + D  +    G +      D
Sbjct: 63  GLD-----------------LAPLYALFQDHGVVKVFHAARQDLEIFWHGGQVIPEPLFD 105

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + + V   G       ++ +K     R+ + KS + +    +      + +A+ +   
Sbjct: 106 TQVAAMVCGFGEQV-GYETLVRK---IARENLDKSSRFTDWSRRPLSEAQKRYALADVTH 161

Query: 549 ILQLWLLLRPKLIV 562
           +  ++  L+ +L  
Sbjct: 162 LRVIYEELKAELDK 175


>gi|324501186|gb|ADY40530.1| DNA repair protein RAD2 [Ascaris suum]
          Length = 947

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 12/118 (10%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP +   G EA+        +   +G    I+S D D+  L   +T   + 
Sbjct: 499 CQELLRLCGIPFVVSPG-EAEAQCCELERLGLVQG----IVSDDSDVW-LFGASTVYKNM 552

Query: 158 VKEEK----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
             +++       E + K+ G+   + V +  L+G   D  PG+  IG  TA  L+ E+
Sbjct: 553 FNQKRRVQMFSSETIHKQLGLTRWETVQIALLSG--GDYTPGLDNIGVVTALELISEF 608


>gi|323352397|gb|EGA84932.1| Exo1p [Saccharomyces cerevisiae VL3]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 43/270 (15%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  +  +DG ++++RA  A         G P +    F    + LL+  + E       +
Sbjct: 23  EGEVLAIDGYAWLHRA--ACSCAYELAMGKPTDKYLQFFIKRFSLLKTFKVEXY-----L 75

Query: 64  IFD-------YPAVTFRNEIYPDYK--------ANRPKIPEMLLPQLPLVRLATQAFGIP 108
           +FD           + R +   + K            K       +   +        I 
Sbjct: 76  VFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYFQKCVDITPEMAKCIIC 135

Query: 109 AIEIQG-------FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
             ++ G       FEAD  +         +G    IIS D DL+               E
Sbjct: 136 YCKLNGIRYIVAPFEADSQMVYLEQKNIVQG----IISEDSDLLVFGCRRLITKLNDYGE 191

Query: 162 --KIDIEHVIK---KW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             +I  ++ IK   K+    +  E+++ +  L+G   D   GIP +G  TA  L++ +  
Sbjct: 192 CLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSG--CDYTNGIPKVGLITAMKLVRRFNT 249

Query: 214 LENILINASRIKQKKRRENILEYAETARLS 243
           +E I+++  R  +    +  +   E A L+
Sbjct: 250 IERIILSIQREGKLMIPDTYINEYEAAVLA 279


>gi|326506138|dbj|BAJ91308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 547

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 17/121 (14%)

Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI--DIEH 167
             +  +EAD  +A    +   +G    +I+ D D   L++         K ++     E 
Sbjct: 147 FVVAPYEADAQLAYLATLDADQGGIAAVITEDSD---LIAYGCTA-IIFKMDRFGNGEEF 202

Query: 168 VIKKW------GIPPEKMVCLQALTGDSI----DNIPGIPGIGYKTAALLLQEYGNLENI 217
           +++K       G+   +       TG  +    D +P +PGIG K A  L+ ++ N++ +
Sbjct: 203 IMEKTLETVKDGL-CFQDFDQNLFTGMCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDLV 261

Query: 218 L 218
           L
Sbjct: 262 L 262


>gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM
           11293]
 gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM
           11293]
          Length = 210

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 13/147 (8%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSF----KVETIFIDLSVHTSQDS 439
           + +   SF   T  +D+F  + + I A+S    K   +F    +        S      +
Sbjct: 21  QNVEFVSFDFETTGLDSFRDRILEIGAVSWRQGKTKETFSSLVRPGIPVPPASTAVHGIT 80

Query: 440 TGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RYGISMRG--FEDIMLM 492
                   +    L  F    E  + + HN+ +D   L     R G+S+    F D + +
Sbjct: 81  DDDLLDAPDEKGALVSFLRFIEGKVAVAHNLPFDYGFLESSVDRLGLSLGDTLFIDTLTL 140

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKE 519
           S  +  G  S+ + ++   +L+  +++
Sbjct: 141 SRRVYPGLPSYALGNLIT-FLNLFQED 166


>gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 686

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKD---DTSFKVETIFIDLSVHTSQD 438
           KL+      F I T  +   ++K I IA +   D K+    T+F      I  ++    +
Sbjct: 415 KLKEATYVVFDIETTGLSVINNKIIEIAGVKMKDGKEIGRYTTFIDPHEKIPYNIQQLTN 474

Query: 439 STGKN-TLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDIM 490
            T +      +I   L KF E     + + HN ++D       L   G+        D +
Sbjct: 475 ITDEMVQGAPDIAEELPKFVEFVGDAVLVAHNARFDMGFIQANLKNIGMPELPNPSLDTL 534

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
            ++ +L     +H + ++A K+
Sbjct: 535 ELARLLFPSLKNHRLNTLADKF 556


>gi|161528211|ref|YP_001582037.1| flap endonuclease-1 [Nitrosopumilus maritimus SCM1]
 gi|226700954|sp|A9A4B0|FEN_NITMS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|160339512|gb|ABX12599.1| XPG I domain protein [Nitrosopumilus maritimus SCM1]
          Length = 340

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 79/219 (36%), Gaps = 32/219 (14%)

Query: 99  RLATQAFGIPAIEIQ----GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           +     FGIP IE         A        Y +  + F  +I+   K L++  + +   
Sbjct: 136 KQLLTYFGIPYIEAPSEGEATAAHLTNTGQAYASASQDFD-SILCGAKRLVRNFTNSGRR 194

Query: 155 YDTVKEEKIDI-EHVIKK------WGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAAL 206
               K   IDI   +I+         +  E+++ +  L G   D  P G   +G KTA  
Sbjct: 195 KIPNKNTYIDIVPEIIETQKTLDSLELTREELIDVGILIG--TDFNPNGFERVGPKTALK 252

Query: 207 LLQEYGNLENIL---INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI 263
           +++++  LE I         I  ++ R+          L+ ++  ++      I  E++ 
Sbjct: 253 MIKQHSKLEEIPQIQEQLEEIDYQEIRK--------IFLNPEVADVK-----EIVFENVN 299

Query: 264 LEDCNGPRLIS-FLKALEFTKLINRVATTYDCDAANIEP 301
            E  +   +             +NR+    +  + N++ 
Sbjct: 300 YEGMSNYLVRERSFSEDRVNSTLNRLKKALEKKSQNLDQ 338


>gi|315180685|gb|ADT87599.1| ribonuclease D [Vibrio furnissii NCTC 11218]
          Length = 371

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 112/343 (32%), Gaps = 55/343 (16%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I    D+++                      F+ +   I +               
Sbjct: 2   NYQIIDQLNDLERVCSLARDADVVMLDTEFVRTRTFYPQLGLIQL--------------- 46

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRG 485
                     ++ +  + L  + ++   +  ++   LK+ H    D  V    +G     
Sbjct: 47  -------FDGENLSLIDPLAMDEMTPFVELLQDTSVLKVLHACGEDIEVFKTSFGCVPFP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +M+  L  G S+   A++A   L+    E+ KS   +  + +    +  E+A  +
Sbjct: 100 MVDTQIMAAFLGYGLST-GFAALAHDLLNV---ELDKSESRTDWLARPLSQKQLEYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYE-----RLDKPMIDVVSQMEITGIQ----IDQDLL- 595
              ++ ++  L  K+         +     +++K       +M    I+    +    L 
Sbjct: 156 VFYLMPMYEQLLEKVTQAGWWEAAQQESELQVEKRTRTTDPEMVYLDIKGAWQLKPKELA 215

Query: 596 -----------KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644
                      + ++ +++ N +  E ++  ++  +  L SPK++ +    +   P   +
Sbjct: 216 ILKPLATWRYQEAMNRDLALNFVIRENDLLTIA--RLALRSPKRMEE----EGIDPHAIR 269

Query: 645 TKTGQWKTTAQDLEQINCGDNPI-IKNILEWRQLSKIKSTYAD 686
             + +     +   Q      P  I  ++++    ++     D
Sbjct: 270 RHSTKMINIVKAALQTPAEHYPEKIVPLMDYPGYKQLFKKLKD 312


>gi|50551183|ref|XP_503065.1| YALI0D20240p [Yarrowia lipolytica]
 gi|49648933|emb|CAG81257.1| YALI0D20240p [Yarrowia lipolytica]
          Length = 1115

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 82  ANRPKIPEMLLPQL--PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIS 139
            +R    E  + Q      +   Q FGIP I     EA+   AT   +   +G    +I+
Sbjct: 805 KSRDTTNEEAITQTMVDECQQLLQLFGIPFITAP-TEAEAQCATLVNLDLVDG----VIT 859

Query: 140 TDKDLMQLVSPTTCLYDTVKE-------EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDN 192
            D D+  L S    +             E      + +   +  + +V L  L G   D 
Sbjct: 860 EDSDVF-LFSSNPRMRVFKNFFNSNKYVECYKTGEIEQTLNLERKDLVDLALLLG--SDY 916

Query: 193 IPGIPGIGYKTAALLLQEY 211
             G+PGIG  +A  +L E+
Sbjct: 917 TDGLPGIGPVSAMEILAEF 935


>gi|229586838|ref|YP_002845339.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|228021888|gb|ACP53596.1| Ribonuclease D [Rickettsia africae ESF-5]
          Length = 281

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 76/212 (35%), Gaps = 27/212 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N K ++++  +L      S     +    ++++      S +  K +    +    
Sbjct: 2   QIIDNQKTLEEFCNRLANKACLSIDTEFERRYTYYAQL-----SIIQVKAEEYCGI---- 52

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFE 487
                         + L+   L+   K   + +  KI H  + D  + +    ++     
Sbjct: 53  -------------IDALSNLDLNIFNKLLADNNITKIFHAPREDLEIFYNLFNTLPANVF 99

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + + +   G+       +  K +  T   I K+ + S  + +   S +  +A+ +  
Sbjct: 100 DIQIAANICGFGKQL-SYDDLCYKLIGIT---IDKTHQKSNWLKRPITSDMLNYAMLDVE 155

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            + +++  +   ++   L + Y+     ++DV
Sbjct: 156 YLYKIYKEINNIIVRNNLTNKYQTTLSALLDV 187


>gi|164657682|ref|XP_001729967.1| hypothetical protein MGL_2953 [Malassezia globosa CBS 7966]
 gi|159103861|gb|EDP42753.1| hypothetical protein MGL_2953 [Malassezia globosa CBS 7966]
          Length = 572

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 95  LPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
             L++   +A GIP +    +EAD  +A      E+EG    II+ D DL+     T   
Sbjct: 50  YELIK-ILRAQGIPYVVAP-YEADAQLAYL----EQEGLIDAIITEDSDLLVFGCKTVLF 103

Query: 155 YDTVKEEKIDIE---HVIKKW----GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
                   ++I+    V  K     G   +    +  L+G   D +P I G+G K A   
Sbjct: 104 KLDTYGHCVEIQRDRFVHAKQLAFDGWSLDDFRRMAILSG--CDYLPSITGMGLKNAHKF 161

Query: 208 LQEYGNLENIL 218
           L++Y ++E +L
Sbjct: 162 LRKYESIERVL 172


>gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 236

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 36/174 (20%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
               T  +D      I             + ++  ++ID      +D+   + +T E L+
Sbjct: 6   LDTETTGLDPAEGHRIIEIGCIEILHTIPTGQIFHVYIDPQRDIPEDAVRVHGITAEFLA 65

Query: 452 YLKKFFEN---------EHFLKIGHNIKYDKLVL-HRYG------ISMRGFEDIMLMSYV 495
             K  F +              + HN  +D   L    G      I      D + ++  
Sbjct: 66  G-KPVFADIASEFLAFIGDAKLVAHNAAFDMRFLNAELGLLGLEPIDSERVVDTLALARR 124

Query: 496 LDSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPID 531
              G S + + ++  ++                  L+    E+L  R++++  +
Sbjct: 125 RHPGAS-NSLDALCNRYGIDNTRRTKHGALLDSEILADVYAELLGGRQAALTFE 177


>gi|168034928|ref|XP_001769963.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678684|gb|EDQ65139.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 220

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 23/172 (13%)

Query: 60  HFAVIFDYPAVTFRNEIYPDYKANRPKI--PEMLLPQLPLVRL---------ATQA-FGI 107
           +   +FD    TF  +     + +R  +   E L     + +           ++A   +
Sbjct: 9   YCVFVFD--GKTFPEKQLEMERRSRKYMGAKETLATMRRIFQRDTSNKGNLSISEAPTSL 66

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM---QLVSPTTCLYDTVKEEKID 164
               +  +EAD   A       + G    ++S+D D +    L               I 
Sbjct: 67  NVCAVGEYEADVTCAHMC----QSGEVNVVLSSDYDSLLFGCLYLIKDIDMVEGYAVVIT 122

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216
           ++ +   + I   + + +  L G   D    I  IG KTA   +Q +G LEN
Sbjct: 123 LQSIYSHFNIDHFQAIDICILMG--TDYNKKISRIGPKTALAEVQSHGKLEN 172


>gi|85014439|ref|XP_955715.1| DNA repair protein [Encephalitozoon cuniculi GB-M1]
 gi|19171409|emb|CAD27134.1| similarity to DNA repair protein RAD2 (fragment) [Encephalitozoon
           cuniculi GB-M1]
          Length = 562

 Score = 43.1 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 26/165 (15%)

Query: 97  LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156
           LV+   + F IP ++    EAD       +    +G    +I+ D D++ L   T     
Sbjct: 391 LVKSVLEVFNIPYVDAP-MEADGQCGFMCHNNVVDG----VITEDNDVL-LYGGTVYRNF 444

Query: 157 TVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             K+   EK  ++ + ++  +  + ++ L  L G   D   G+ GIG   A   +++ G+
Sbjct: 445 FRKDREIEKYSLDRIERELQLDRKNLITLSYLLG--SDYTDGVKGIGPVKALEAIRK-GS 501

Query: 214 --------LENILIN-----ASRIKQKKR-RENILEYAETARLSR 244
                   L  + +N        I +    +++I E+ E   LSR
Sbjct: 502 VGEEETSMLLELYLNPVAVDVMDIPEPVVNKDSIREFYEKNGLSR 546


>gi|302772224|ref|XP_002969530.1| hypothetical protein SELMODRAFT_410274 [Selaginella moellendorffii]
 gi|300163006|gb|EFJ29618.1| hypothetical protein SELMODRAFT_410274 [Selaginella moellendorffii]
          Length = 454

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK- 162
           AFGIP + +   EA+   A    +    GFA    + D D +   +       ++K  + 
Sbjct: 31  AFGIPCL-VSLEEAEAQCAALNAM----GFADACFTADSDALLFGAKVVYKDISLKPGES 85

Query: 163 ----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
                D+  +   +G     ++ L  L G   D  PG+ G+G + A  +++++G  + IL
Sbjct: 86  HVVAYDMTKIRNAFGYGRNSLIALGILLG--CDYFPGVHGLGPEKAQQIVKKFGE-DKIL 142

Query: 219 INASRIKQKKRRENILEYAE 238
               R       +  L+  +
Sbjct: 143 EEMLRQGPVTLAKRTLKCKD 162


>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
 gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 876

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 97/264 (36%), Gaps = 27/264 (10%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---- 430
           +     + + E      F + +  +D    + I IA   L++K +   K E    +    
Sbjct: 496 EKFSLLINEFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKSV 555

Query: 431 ---LSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL------HRYG 480
                VH   D      + ++    LK+F E ++  + +GHN++YD  +L         G
Sbjct: 556 KDSYYVHGFSDEM-LQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERSNLG 614

Query: 481 I-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT------RKEILKSRKSSIPIDKI 533
               + F D + +      G  ++ + ++++ + +          +I+ + +  +   + 
Sbjct: 615 KPKFKTFYDTLDIYRRFYPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGELLV---RA 671

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            + +++E ++E   ++ +         I +KL  +++  +      +    + G  I   
Sbjct: 672 INEKIRETSMERMALMSKHLKAFTA--ISKKLNELFQIAESKRPYELVACVMNGFNIKSM 729

Query: 594 LLKQVSAEISKNLLSLEENIYDLS 617
                + E    L  L     DL 
Sbjct: 730 YAGDENKEKLNRLRDLYALFRDLD 753


>gi|146416653|ref|XP_001484296.1| hypothetical protein PGUG_03677 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 635

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           + +   A  +  +    +EAD  +     I   +G    I+S D DL+            
Sbjct: 184 IMVELDARKVKYVVAP-YEADPQMVYLEKIGAVDG----ILSEDSDLLIFGCQRLITKLN 238

Query: 158 VKEE--KIDIEHVIKKWGI------PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
              E   ID  +  K   I        +++  +  L G   D   GIPGIG KTA  L+ 
Sbjct: 239 DYGECVVIDRANFPKVKKIPQLSSYTQQQLRLVAMLAG--CDYTKGIPGIGLKTAFTLVW 296

Query: 210 EYGNLENILINASRIKQKKRRENILE---YAETARLSRKL 246
           ++G+L ++L       + K  +   +    A+ A   +K+
Sbjct: 297 KHGDLNSVLSALD--AEGKVPDTFADEVFNADLAFQFQKV 334


>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           haemofelis str. Langford 1]
          Length = 1393

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 92/249 (36%), Gaps = 26/249 (10%)

Query: 283 KLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN 342
             +       + +  +I P+ +    +   G+ +  +          +   ++D TS  +
Sbjct: 247 SFVEDEFANLEKEEKSIVPLSIHTKFSAFDGLYVFKDFVSKAKALGHKALGVTDFTSVQS 306

Query: 343 SEQTPQKLFLERLQKL--SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
             +  +    E ++ +  ++  I  D Y  I+NT     + ++ +      F I T  ++
Sbjct: 307 FAEIERVSRKEGIKPIYGAELEIVPDEYPFIINTD----YQREDQYNVYCVFDIETTGLN 362

Query: 401 AFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
               +   IA         I+T       S  ++    DL+  T +    K    + +L 
Sbjct: 363 PLFDEITEIAIYKYSNKRRIATYHSYFKISEPLKQHIKDLTHITDELLAEKGQDLEVVLK 422

Query: 452 YLKKFFENEHFLKIGHN-IKYDKLVLH----RYGISM--RGFEDIMLMSYVLDSGR--SS 502
            +K F +    + + HN I++D   L+    + G+        D + +S  + S     S
Sbjct: 423 EVKDFTQ--GSVLVAHNGIEFDFPFLNAKYIKLGMEPLSNPLIDTLRLSQTIFSEEKYKS 480

Query: 503 HDIASIAQK 511
           H + +I ++
Sbjct: 481 HSLGAICKR 489


>gi|146340329|ref|YP_001205377.1| ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278]
 gi|146193135|emb|CAL77147.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278]
          Length = 389

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 59/196 (30%), Gaps = 26/196 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T D+     +L      +          ++     + +++ D+             
Sbjct: 10  LITTTADLAAACARLAQHPVITVDTEFLRETTYYPLLCVVQMASQDEA------------ 57

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFED 488
                   D+  +       L    +   NE  LK+ H  + D  ++ HR GI      D
Sbjct: 58  -----VVIDALAEGID----LKAFFELMANEKVLKVFHAARQDIEIIWHRAGIVPHPIFD 108

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + + VL  G S      + ++   +      K+ + +    +    +   +A  +   
Sbjct: 109 TQVAAMVLGYGDSI-AYDQLVERITGHRPD---KTHRFTDWSRRPLTKEQAHYAEADVTH 164

Query: 549 ILQLWLLLRPKLIVEK 564
           +  ++  L   L    
Sbjct: 165 LRDVFAALDTDLKKRG 180


>gi|302308357|ref|NP_985242.2| AER387Cp [Ashbya gossypii ATCC 10895]
 gi|299789416|gb|AAS53066.2| AER387Cp [Ashbya gossypii ATCC 10895]
          Length = 655

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 86/272 (31%), Gaps = 55/272 (20%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD- 66
             +DG ++++R+  A    +    G P      +     K L   R +     + V FD 
Sbjct: 27  LAIDGYAWLHRS--AHSCATELGMGQPTE---KYLQFFVKRLTILRDQYDIEPYLV-FDG 80

Query: 67  ------YPAVTFRNEIYPDY---------KANRPK-----------IPEMLLPQLPLVRL 100
                       R+E   +          K  R K            PEM      ++  
Sbjct: 81  AGIKVKAGTEAKRHEKRAESRARAIDLWEKGERRKSFEYFQKCVDITPEM----TKVIID 136

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
                G   +    +EAD  +         +G    IIS D DL+               
Sbjct: 137 YCIGAGFKYVVAP-YEADPQLVYLEKSGLVQG----IISEDSDLLVFGCRRLITKLNDYG 191

Query: 161 EKI-----DIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
           E       D  H+  K+    +    +  +  L G   D   GIP +G  TA  L+ ++ 
Sbjct: 192 EGFEICRDDFVHLPDKFPLNSLGESGLRTMVCLAG--CDYTKGIPQVGLLTAVKLVVKHK 249

Query: 213 NLENILINAS-RIKQKKRRENILEYA--ETAR 241
            ++ IL+      K K   E + EY   + A 
Sbjct: 250 TMDQILLTIKREGKWKVPAEFLDEYRFADLAF 281


>gi|151945661|gb|EDN63902.1| 5'-3'-exonuclease [Saccharomyces cerevisiae YJM789]
 gi|190407372|gb|EDV10639.1| exonuclease [Saccharomyces cerevisiae RM11-1a]
 gi|207341254|gb|EDZ69360.1| YOR033Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273419|gb|EEU08355.1| Exo1p [Saccharomyces cerevisiae JAY291]
 gi|259149515|emb|CAY86319.1| Exo1p [Saccharomyces cerevisiae EC1118]
 gi|323331736|gb|EGA73150.1| Exo1p [Saccharomyces cerevisiae AWRI796]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 43/270 (15%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  +  +DG ++++RA  A         G P +    F    + LL+  + E       +
Sbjct: 23  EGEVLAIDGYAWLHRA--ACSCAYELAMGKPTDKYLQFFIKRFSLLKTFKVEPY-----L 75

Query: 64  IFD-------YPAVTFRNEIYPDYK--------ANRPKIPEMLLPQLPLVRLATQAFGIP 108
           +FD           + R +   + K            K       +   +        I 
Sbjct: 76  VFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYFQKCVDITPEMAKCIIC 135

Query: 109 AIEIQG-------FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
             ++ G       FEAD  +         +G    IIS D DL+               E
Sbjct: 136 YCKLNGIRYIVAPFEADSQMVYLEQKNIVQG----IISEDSDLLVFGCRRLITKLNDYGE 191

Query: 162 --KIDIEHVIK---KW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             +I  ++ IK   K+    +  E+++ +  L+G   D   GIP +G  TA  L++ +  
Sbjct: 192 CLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSG--CDYTNGIPKVGLITAMKLVRRFNT 249

Query: 214 LENILINASRIKQKKRRENILEYAETARLS 243
           +E I+++  R  +    +  +   E A L+
Sbjct: 250 IERIILSIQREGKLMIPDTYINEYEAAVLA 279


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 19/174 (10%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           LE      F + T  + A +   I + A+     +    F+        LS         
Sbjct: 413 LEDETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDI 489
           + D         E+    + +  +     + HN  +D   L     + G+        D 
Sbjct: 473 TDDMLTDAPEVGEVFKKFQAWMGDHTL--VAHNASFDMGFLNVGFKKCGLDKPKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQE 540
           + ++  L     +H + ++ +K    L+   + I  +  +   + K+    +++
Sbjct: 531 LELARFLFPDMKNHRLNTLCKKLDIELTQHHRAIYDTEATGYLLAKMLKEVIEK 584


>gi|323346487|gb|EGA80774.1| Exo1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 43/270 (15%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  +  +DG ++++RA  A         G P +    F    + LL+  + E       +
Sbjct: 23  EGEVLAIDGYAWLHRA--ACSCAYELAMGKPTDKYLQFFIKRFSLLKTFKVEPY-----L 75

Query: 64  IFD-------YPAVTFRNEIYPDYK--------ANRPKIPEMLLPQLPLVRLATQAFGIP 108
           +FD           + R +   + K            K       +   +        I 
Sbjct: 76  VFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYFQKCVDITPEMAKCIIC 135

Query: 109 AIEIQG-------FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
             ++ G       FEAD  +         +G    IIS D DL+               E
Sbjct: 136 YCKLNGIRYIVAPFEADSQMVYLEQKNIVQG----IISEDSDLLVFGCRRLITKLNDYGE 191

Query: 162 --KIDIEHVIK---KW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             +I  ++ IK   K+    +  E+++ +  L+G   D   GIP +G  TA  L++ +  
Sbjct: 192 CLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSG--CDYTNGIPKVGLITAMKLVRRFNT 249

Query: 214 LENILINASRIKQKKRRENILEYAETARLS 243
           +E I+++  R  +    +  +   E A L+
Sbjct: 250 IERIILSIQREGKLMIPDTYINEYEAAVLA 279


>gi|323307136|gb|EGA60419.1| Exo1p [Saccharomyces cerevisiae FostersO]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 43/270 (15%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  +  +DG ++++RA  A         G P +    F    + LL+  + E       +
Sbjct: 23  EGEVLAIDGYAWLHRA--ACSCAYELAMGKPTDKYLQFFIKRFSLLKTFKVEPY-----L 75

Query: 64  IFD-------YPAVTFRNEIYPDYK--------ANRPKIPEMLLPQLPLVRLATQAFGIP 108
           +FD           + R +   + K            K       +   +        I 
Sbjct: 76  VFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYFQKCVDITPEMAKCIIC 135

Query: 109 AIEIQG-------FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
             ++ G       FEAD  +         +G    IIS D DL+               E
Sbjct: 136 YCKLNGIRYIVAPFEADSQMVYLEQKNIVQG----IISEDSDLLVFGCRRLITKLNDYGE 191

Query: 162 --KIDIEHVIK---KW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             +I  ++ IK   K+    +  E+++ +  L+G   D   GIP +G  TA  L++ +  
Sbjct: 192 CLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSG--CDYTNGIPKVGLITAMKLVRRFNT 249

Query: 214 LENILINASRIKQKKRRENILEYAETARLS 243
           +E I+++  R  +    +  +   E A L+
Sbjct: 250 IERIILSIQREGKLMIPDTYINEYEAAVLA 279


>gi|321465548|gb|EFX76549.1| hypothetical protein DAPPUDRAFT_55085 [Daphnia pulex]
          Length = 181

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +  T+  +  +Q L +       +                        D S++  T  + 
Sbjct: 43  VDTTEAFEHLLQDLLSQTVIGVDLE--------------------HHSDRSYRGITCLMQ 82

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           +S   +        L    L  L + F +   +KI      D + L R +GI +    D 
Sbjct: 83  ISTEKTDYIVDTLQLWDH-LQPLNEVFCDPTIVKIFQGADSDVIWLQRDFGIYVVNLFDT 141

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
              + +L  G     ++ + Q +      
Sbjct: 142 FQAASLL--GFQKKGLSFLLQHYCQVHVD 168


>gi|303232403|ref|ZP_07319095.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
 gi|302481487|gb|EFL44555.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
          Length = 188

 Score = 43.1 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 30/157 (19%)

Query: 5   NHLFLVDGSSFIYRA--FYATPLLSRKHDGLPVNAIAGFCNML----WKLLQNSRKESIA 58
             L +VDG + +  +  + ATP       G    A A   +++     +L+ +    +  
Sbjct: 6   KPLLVVDGYNVLLASDWYSATPTAPAPAGGYATVASAQDTDVMYSARERLVSDVAAYAHG 65

Query: 59  SHFA-VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117
           ++ A V+FD                 R K       Q+  VR             +G  A
Sbjct: 66  TYEACVVFDG---------------TRNKSKTPATVQVAGVR--------VVFSREGETA 102

Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL 154
           DD+I      A ++G  VT+++ D+ +   V      
Sbjct: 103 DDVIERLVTRAREQGREVTLVTNDRTIRSSVGSVVTR 139


>gi|307544648|ref|YP_003897127.1| ribonuclease D [Halomonas elongata DSM 2581]
 gi|307216672|emb|CBV41942.1| ribonuclease D [Halomonas elongata DSM 2581]
          Length = 395

 Score = 43.1 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 28/202 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I   + + +   ++      +          FH  P  +              V      
Sbjct: 28  IDTPEALDEACAEVAEADVIALDTEFFREKTFHPVPALVQFCVGGAAYLVDPTVVACT-- 85

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDI 489
                                  ++    E  +K+ H    D ++ LH  G+++    D 
Sbjct: 86  --------------------DAFRRLL-GEGPVKLLHASSEDLEVFLHWAGVTVSPLVDT 124

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            +   +L     +     + + W+    + + K    S  +++        +A  +   +
Sbjct: 125 QIAQALLGEV-PAMGYQKLVEFWVG---ETLPKDETRSNWLERPLSETQTTYAALDVIYL 180

Query: 550 LQLWLLLRPKLIVEKLLHVYER 571
           L++W + R  L     L   E 
Sbjct: 181 LEVWQVQRDALERYGRLGWLEE 202


>gi|6324607|ref|NP_014676.1| Exo1p [Saccharomyces cerevisiae S288c]
 gi|1706421|sp|P39875|EXO1_YEAST RecName: Full=Exodeoxyribonuclease 1; AltName:
           Full=Exodeoxyribonuclease I; Short=EXO I;
           Short=Exonuclease I; AltName: Full=Protein DHS1
 gi|1041655|emb|CAA60749.1| ORF OR26.23 [Saccharomyces cerevisiae]
 gi|1420150|emb|CAA99223.1| DHS1 [Saccharomyces cerevisiae]
 gi|1840127|gb|AAB47428.1| Exo1p [Saccharomyces cerevisiae]
 gi|285814922|tpg|DAA10815.1| TPA: Exo1p [Saccharomyces cerevisiae S288c]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 43/270 (15%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  +  +DG ++++RA  A         G P +    F    + LL+  + E       +
Sbjct: 23  EGEVLAIDGYAWLHRA--ACSCAYELAMGKPTDKYLQFFIKRFSLLKTFKVEPY-----L 75

Query: 64  IFD-------YPAVTFRNEIYPDYK--------ANRPKIPEMLLPQLPLVRLATQAFGIP 108
           +FD           + R +   + K            K       +   +        I 
Sbjct: 76  VFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYFQKCVDITPEMAKCIIC 135

Query: 109 AIEIQG-------FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
             ++ G       FEAD  +         +G    IIS D DL+               E
Sbjct: 136 YCKLNGIRYIVAPFEADSQMVYLEQKNIVQG----IISEDSDLLVFGCRRLITKLNDYGE 191

Query: 162 --KIDIEHVIK---KW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             +I  ++ IK   K+    +  E+++ +  L+G   D   GIP +G  TA  L++ +  
Sbjct: 192 CLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSG--CDYTNGIPKVGLITAMKLVRRFNT 249

Query: 214 LENILINASRIKQKKRRENILEYAETARLS 243
           +E I+++  R  +    +  +   E A L+
Sbjct: 250 IERIILSIQREGKLMIPDTYINEYEAAVLA 279


>gi|150016887|ref|YP_001309141.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903352|gb|ABR34185.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 976

 Score = 43.1 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 392 FKIITDTMDAFHSKPIAIAI------------STLDQKDDTSFKVETIFIDLSVHTSQDS 439
             I T  +D   S+ I I              + +  +      + ++  DL       +
Sbjct: 15  LDIETTGLDETCSEIIEIGAVKVKNGVITTYNTLIRPRGRVPISIYSLCSDLKEADLLSA 74

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDS 498
              N++ +E+L +L      E    I HN  +++  L  Y   ++    D M ++ +L+ 
Sbjct: 75  RSLNSIKQEVLEFL------EDLPLICHNGNFERKFLSFYIPEIKNTIMDSMELAIILEP 128

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
            R  +++ S+ ++  +  + E+ +    SI   K+
Sbjct: 129 WRKEYNLNSLIKEITNLNKDELHRGLSDSIDTLKV 163


>gi|326527491|dbj|BAK08020.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1503

 Score = 43.1 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--CLY 155
            +   Q FG+P I     EA+   A        +G    +++ D D+    +      ++
Sbjct: 879 CQELLQMFGLPYIIAP-MEAEAQCAYMEINNLVDG----VVTDDSDVFLFGARNVYKNIF 933

Query: 156 DTVKE-EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           D  K  E   ++ +  + G+  E+++ +  L G   D   GI GIG   A  ++  +   
Sbjct: 934 DDRKYVETYLMKDIESELGLTREQLIRMAMLLG--SDYTEGISGIGIVNAIEVVHAFPEE 991

Query: 215 ENI 217
           + +
Sbjct: 992 DGL 994


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score = 43.1 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 47/141 (33%), Gaps = 16/141 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ-- 437
           +K++      F I T  +++  +K I I    +      D   ++    I +  H ++  
Sbjct: 415 KKIDEEEFVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQLINPGISIPYHITEIT 474

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FE 487
               +         E++     F  +   + + HN  +D   + R       I +     
Sbjct: 475 SITNEQVANQPKIDEVIGKFVDFIGDA--VLVAHNAPFDMGFIKRDIKEYLNIDLENSVI 532

Query: 488 DIMLMSYVLDSGRSSHDIASI 508
           D + M+  L      + +  +
Sbjct: 533 DTLQMARDLFPDFKKYGLGDL 553


>gi|182412681|ref|YP_001817747.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
 gi|177839895|gb|ACB74147.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
          Length = 391

 Score = 43.1 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 59/197 (29%), Gaps = 30/197 (15%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              Y  I     +   +  L+ +   +     D M  + ++   +      +        
Sbjct: 22  PPEYVLIDQPGQLAPLLAALDRVDEVALDTEADNMFHYRTRVCLLQFLVGREIFLVDVLA 81

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISM 483
              F  L    ++ +                         I H   +D  +LH +     
Sbjct: 82  PLPFEGLWARLAEKNL------------------------IMHGSDFDLRLLHDFCRFRP 117

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           +   D ML + +++  R    +AS+ +         + K  + +    +    ++ ++A 
Sbjct: 118 KSIFDTMLAAQLIN--RPRIGLASLLEDHFGVK---LSKESQKANWSKRPLTKKMLDYAA 172

Query: 544 ENSNVILQLWLLLRPKL 560
            +   +  L  +L  +L
Sbjct: 173 LDVFHLPALRDILTREL 189


>gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 375

 Score = 43.1 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 63/200 (31%), Gaps = 42/200 (21%)

Query: 384 LETIGSASFKIITDTMDAFHSK----------PIAIA-ISTLDQKDDTSFKVETIFIDLS 432
                     + T    +   +          P+ ++  +TL                +S
Sbjct: 10  ACEQPLVFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTTLVNPGQAIPPFIQQLTGIS 69

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRG-FE 487
               +D+    +L   ++  L      +  L + HN  +D+  L     R GI+      
Sbjct: 70  DEMVRDAPSFASLAPALVERL------DGKLFVAHNASFDRGFLRAEFERAGIAFNPDVL 123

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             + +S  L    + H + ++ ++                +P         +  A+ +++
Sbjct: 124 CTVRLSRALFPREARHGLDALIERH-------------GLVP-------AARHRALADAD 163

Query: 548 VILQLWLLLRPKLIVEKLLH 567
           ++ Q W  L   + +E+L  
Sbjct: 164 LLWQFWRQLHEIVPLERLRD 183


>gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3]
 gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 6/137 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           L+ L +   N   +K+ H  + D  +++  G +      D  + + V   G S      +
Sbjct: 60  LTPLFELMANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSI-SYDQL 118

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLH 567
            Q+       +I KS + +    +    +  ++A+ +   +  ++L L+ +L  E   L 
Sbjct: 119 VQR---IKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLEREGRSLW 175

Query: 568 VYERLDKPMIDVVSQME 584
           + E +D         M 
Sbjct: 176 LTEEMDILESRETYDMH 192


>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
 gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
          Length = 1470

 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L+      F + T  + A +   I +A   ++     DT          LS         
Sbjct: 449 LKEATYVVFDVETTGLSAVYDTIIELAAVKMENGQVVDTFESFIDPGRPLSATIINLTGI 508

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFEDI 489
           + D    +   + +L   K++  +   + + HN  +D   L+    + GI        D 
Sbjct: 509 TDDMLKGSDDIETVLKRFKEWCGDA--VLVAHNASFDMGFLNTAYSKAGIDKAENAVIDT 566

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K+
Sbjct: 567 LELARFLYPHFKNHRLNTLTKKF 589


>gi|162146523|ref|YP_001600982.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|209543478|ref|YP_002275707.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785098|emb|CAP54642.1| putative Ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531155|gb|ACI51092.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 393

 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 68/202 (33%), Gaps = 32/202 (15%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T+D+   V++L      S          +  +   + ++  D+             
Sbjct: 14  LITTTEDLTGVVERLRREPFVSIDTEFVRERTYWPELCLVQLAGQDEVVVV--------- 64

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFED 488
                   D+          L+ L    ++   +K+ H  + D ++ L+ +G       D
Sbjct: 65  --------DTLAPGID----LAPLGVLLDDPEVVKVFHAARQDLEIFLYLFGHLPAALFD 112

Query: 489 IMLMSYVLD-SGRSSHD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             + + V     +  +D  +AS+    +          R S      +S++Q+  +A  +
Sbjct: 113 TQVAAMVAGFGDQVGYDNLVASLTGAHIDKAH------RFSDWSARPLSEAQIA-YAAAD 165

Query: 546 SNVILQLWLLLRPKLIVEKLLH 567
              +  ++ LL  +L  E  L 
Sbjct: 166 VTHLRTVYQLLLERLEREGRLD 187


>gi|154494239|ref|ZP_02033559.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
           43184]
 gi|154086101|gb|EDN85146.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
           43184]
          Length = 193

 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             L++F  NE  LKIG +++ D   +  R  I    F D  L +YV   G+   + AS+ 
Sbjct: 89  EALEEFLANEKVLKIGLSLRDDFGAMRKRTDIQPANFLD--LQNYV---GQFGIEDASLQ 143

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
           + +     K+I K ++ S     +     +++A  ++   L+++  L+ 
Sbjct: 144 KIYAILFNKKISKGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLKQ 192


>gi|255015322|ref|ZP_05287448.1| hypothetical protein B2_15541 [Bacteroides sp. 2_1_7]
          Length = 193

 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 30/192 (15%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTSFKVETI 427
            I++ ++  + V+ L       F   T          K   + IST D      F++  I
Sbjct: 28  TILSKEEADKAVEYLLRFPIVGFDTETRPSFKKGQRYKISLMQISTDD--TCFLFRLNHI 85

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGF 486
            I                       L+KF ++   LKIG +++ D   +  R  I    F
Sbjct: 86  GIP--------------------ESLEKFLKSSSTLKIGLSLRDDFGAIRKRSDIEPANF 125

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  L +YV   G+   + AS+ + +    +K+I K ++ +     +     +++A  ++
Sbjct: 126 LD--LQNYV---GQFGIEDASLQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALDA 180

Query: 547 NVILQLWLLLRP 558
              L+++ LL  
Sbjct: 181 WACLRIYNLLNQ 192


>gi|195329844|ref|XP_002031620.1| GM26098 [Drosophila sechellia]
 gi|194120563|gb|EDW42606.1| GM26098 [Drosophila sechellia]
          Length = 583

 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
           LS H    +  +    K+I   L++  E++  +K+G   + D + L H YG+ +    D 
Sbjct: 101 LSSHRGLCALFRLCHMKQIPKDLRELLEDDDVIKVGVAPQEDAMKLSHDYGVGVASTLD- 159

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            L    + +G     +  +++  L+YT  +  +   S+     +   Q+ ++A  ++ + 
Sbjct: 160 -LRFLCVMAGHKPEGLGKLSKTHLNYTLDKHWRLACSNWEAKTLEPKQL-DYAANDALMA 217

Query: 550 LQLWLLLRPKLI 561
           + ++  L   L 
Sbjct: 218 VAIYQKLCRDLQ 229


>gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 235

 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 69/234 (29%), Gaps = 43/234 (18%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL- 450
               T  ++      +             + K    +++    + + +   + LT E L 
Sbjct: 6   LDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPERDSEEGALAVHGLTTEFLR 65

Query: 451 ---------SYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM-----RGFEDIMLM 492
                    + L+ +        I HN  +D   L     R  I +      G  D ++ 
Sbjct: 66  DKPKFAAVAAELRDYISGAEV--IIHNAPFDVGFLDAEFKRLDIPLFNTQVSGVIDTLVQ 123

Query: 493 SYVLDSGRSSHDIASIAQKW----------LSYTRKEILKS-------RKSSIPIDKISD 535
           +  +  G+  + + S+  ++           +    E+L          ++S+ ++    
Sbjct: 124 AKEMHPGK-RNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMELDDG 182

Query: 536 SQVQEHAIENSNVILQLWLLL---RPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
            Q  E       V L   L+L     +L   +L       +      + +M   
Sbjct: 183 DQAGESGAHLELVPLADILVLPASAEELGEHELALTALDKEMRGTS-LWRMAEN 235


>gi|58584516|ref|YP_198089.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418832|gb|AAW70847.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 4/139 (2%)

Query: 443 NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGR 500
           + L  E+ LS++KK   N    K+ H+ + D   +   +        D  + +       
Sbjct: 56  DALAPEVDLSFIKKIMLNREITKVFHSCRQDIESLFTVFKCIPAPIFDTQVAAMFCHYYH 115

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
                + + +++      +I    K+S  + +       ++AI +   +  L  +L  +L
Sbjct: 116 DFIGYSKVVEQYQGVVLDKI--KAKNSDWLRRPLSKDQLDYAISDVVHLYDLHQILCDRL 173

Query: 561 IVEKLLHVYERLDKPMIDV 579
                +  +    + ++D+
Sbjct: 174 EESGRMGWFHEEMESVVDI 192


>gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
 gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti
           1021]
 gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
          Length = 242

 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 38/208 (18%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---------LSVHTSQDSTGK 442
           F   T  +D    + I I    L+ +  T   +               L+VH   D   K
Sbjct: 6   FDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGERKVHPEALAVHGITDEFLK 65

Query: 443 NTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMRG---FEDIMLMSY 494
           +     ++   +  FF +     + HN  +D         R G+   G     D + ++ 
Sbjct: 66  DKPPFADVAQEIVDFFGDAR--WVAHNATFDIGFINAEFERLGLPPIGSDRVIDTLALAR 123

Query: 495 ------------------VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
                             V +S R+ H  A +  + L+    E++  R++++ +      
Sbjct: 124 RKHPMGPNSLDALCRRYGVDNSHRTRHG-ALLDSELLAEVYIEMIGGRQAALGLVVTEAG 182

Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK 564
                A +   V++     LRP+L   +
Sbjct: 183 DRPIEADDGPVVVVTRERPLRPRLTEAE 210


>gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
 gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
          Length = 827

 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 36/194 (18%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKP-IAIAISTLDQKDDTSFKVETIFIDLSVHT---- 435
           + ++ +   A   +      A      + I I   D+   T          LS H     
Sbjct: 1   MMQVNSQKYAIVDLEATGAHAMAEIIQVGIVIIENDEIVKTYQTDVNPHEALSEHIINLT 60

Query: 436 --SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMR-GFED 488
             + +   K     ++   +    E+   + + HN+K+D  +L       G  +R    D
Sbjct: 61  GITDEQLAKAPDFSQVAQEIFNLIED--CVFVAHNVKFDANLLAEQLFMEGYELRTPRVD 118

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-AIENSN 547
            + ++ V       + + ++A                     D ++      H AI ++ 
Sbjct: 119 TVELAQVFYPTFEKYSLGNLA---------------------DVLALDLADAHTAISDAY 157

Query: 548 VILQLWLLLRPKLI 561
              QL+L L+ K+ 
Sbjct: 158 ATAQLFLKLKAKMK 171


>gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS
           2060]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 40/176 (22%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID--------LSVHTSQDS-TGK 442
               T   DA   + I I    L     T  +                +VH   D+    
Sbjct: 7   LDTETTGTDAKTDRLIEIGGIELLNHIPTGREFHRYINPQRAVSQGAFAVHGLSDAFLAD 66

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYG------ISMRGFEDIMLM 492
             L  EIL     F  +  F  + HN  +D   L     R G      I +    D + +
Sbjct: 67  KPLFAEILPDFLDFCGDATF--VIHNAAFDVGFLNAEYARLGETAPPPIELSAVVDTLAL 124

Query: 493 SYVLDSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPI 530
           +       + +++ ++  ++                  L+    E+L  +++S+ +
Sbjct: 125 ARRKHPNAA-NNLDALCARYGIDNSRRTKHGALLDAQILAEVYIELLGGKQTSLGL 179


>gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1]
 gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum
           aromaticum EbN1]
          Length = 642

 Score = 42.7 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 24/147 (16%)

Query: 384 LETIGSASFKIITDTMDAFHS-KPIAIAIS-------TLDQKDDTSFKVETIFIDLS--- 432
           L  +    F   T  +D     + I I  +          +  +     E      S   
Sbjct: 447 LSELTYTVFDTETTGLDPSKGDEIIQIGATRIVNSKLLRQESFEQLIDPERGVSPESVKI 506

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH--------RYGISMR 484
              + D          +L     F ++   + I HN  +D   L         R+    +
Sbjct: 507 HGITPDMLAGQPTIARVLPAFHAFAQD--TVLIAHNAAFDMRFLQLKETMTGLRFD---Q 561

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQK 511
              D +L+S V+   + SH + +IA++
Sbjct: 562 PVLDTLLLSAVVHPNQESHRLEAIAER 588


>gi|68478167|ref|XP_716825.1| hypothetical protein CaO19.8541 [Candida albicans SC5314]
 gi|68478288|ref|XP_716765.1| hypothetical protein CaO19.926 [Candida albicans SC5314]
 gi|46438448|gb|EAK97778.1| hypothetical protein CaO19.926 [Candida albicans SC5314]
 gi|46438510|gb|EAK97839.1| hypothetical protein CaO19.8541 [Candida albicans SC5314]
          Length = 699

 Score = 42.7 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 108/333 (32%), Gaps = 79/333 (23%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHD----GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
             +D   +++RA      L    +    G P      +   +   +Q      I  +F  
Sbjct: 27  LAIDTYGWLHRA------LVSCAEELCLGKPT---RNYITAILNKIQMLNHFGITPYF-- 75

Query: 64  IFD-----YPAVTFR---------NEIYPDY--KANRPKIPEMLL------PQLPLVRLA 101
           +FD         T R          E+   Y    NR    +  +       Q+    + 
Sbjct: 76  VFDGASLPTKQETNRERQLKRQEAKELAEKYIAANNRKLAYKQFMKAAYVTSQMAKSVMC 135

Query: 102 -TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM---------QLVSPT 151
                 I  I    +EAD  +     +   +G    I+S D DL+         +L    
Sbjct: 136 ELDNLSIKYIVAP-YEADPQMVYLEKMGIVDG----ILSEDSDLLIFGCKKLITKLKDDG 190

Query: 152 TCLYDTV-KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE 210
           TC+     K +K+     + ++    E++  +  L+G   D   G+PGIG KTA  L+++
Sbjct: 191 TCVEINRDKFDKVKEIPYLNQYN--MEQLRLVAMLSG--CDYTKGVPGIGLKTAFQLVRK 246

Query: 211 YGNLENILINASRIKQKKRRENILEYAETARL-----------SRKLVMLRTDVPITIPL 259
           Y N   I+I    +  KK  +   +  + A L           S+KL            L
Sbjct: 247 YNNFTKIMIALRSM-GKKIPDTFSDEVKLANLAFQFQKVFDPTSQKLTT----------L 295

Query: 260 EHLILEDCNGPRLISFLKALEFTKLINRVATTY 292
                +          L++     L + +    
Sbjct: 296 NEYPQDGTEVEADQGLLESCCGKTLTDEIYQQL 328


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
          Length = 1449

 Score = 42.7 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 48/141 (34%), Gaps = 16/141 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ-- 437
           +K++      F I T  +++  +K I I    +      D   ++    I +  H ++  
Sbjct: 415 KKIDEEEFVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQLINPGISIPYHITEIT 474

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FE 487
               +         E++    +F  +   + + HN  +D   + R       I +     
Sbjct: 475 SITNEQVANQPKIDEVIGKFVEFIGDA--VLVAHNAPFDMGFIKRDIKEYLNIDLECSVI 532

Query: 488 DIMLMSYVLDSGRSSHDIASI 508
           D + M+  L      + +  +
Sbjct: 533 DTLQMARDLFPDFKKYGLGDL 553


>gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 1470

 Score = 42.7 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 60/168 (35%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD- 418
           +  +  D    + N  D+      +       F + T  + A ++  I IA S + + + 
Sbjct: 406 EANLVEDRVPIVYNEVDMD-----MNEATYVVFDVETTGLSAINNDLIQIAASKMHKGNI 460

Query: 419 --------DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                   D    +     DL+  T Q   G   + + +L   + F ++   + + HN  
Sbjct: 461 VEQFDEFIDPGHPLSQFTTDLTGITDQHVKGAKPILQ-VLQEFQSFCQD--TVLVAHNAT 517

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 518 FDVGFMNANYERHDLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565


>gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159]
 gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159]
          Length = 1465

 Score = 42.7 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 61/168 (36%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD- 418
           +  +  D    + N  D+      +       F + T  + A ++  I IA S + + + 
Sbjct: 401 EANLVEDRVPIVYNEVDMD-----MNEATYVVFDVETTGLSAINNDLIQIAASKMHKGNI 455

Query: 419 --------DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
                   D    +     DL+  T Q   G   +++ +L   + F ++   + + HN  
Sbjct: 456 VEQFDEFIDPGHPLSQFTTDLTGITDQHVKGAKPISQ-VLQEFQSFCQD--TVLVAHNAT 512

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 513 FDVGFMNANYERHDLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|332827669|gb|EGK00408.1| hypothetical protein HMPREF9455_03256 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 181

 Score = 42.7 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 25/190 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD-QKDDTSFKVETIFI 429
           + +  + ++    L+   +  F   T        K ++  I+ +    DDT F      I
Sbjct: 11  VQSESEAEKAAAYLKKQTAIGFDTETR---PAFRKGVSHQIALMQLSTDDTCFLFRLNII 67

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
            L                     L +   N    KIG ++K D   +H+   +      I
Sbjct: 68  GLP------------------DCLAEILVNPAIKKIGLSLKDDFSAIHKRNAAFVPSNFI 109

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            L S+V + G   + +  I   +     K I K ++ S     +     + +A  ++   
Sbjct: 110 ELQSFVKNYGIEDNGLQRI---YGILFEKRISKGQRLSNWEADVLSDAQKMYAAIDAWAC 166

Query: 550 LQLWLLLRPK 559
           L+++  L+ +
Sbjct: 167 LKIYNELKVR 176


>gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I]
 gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822]
 gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50]
 gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis]
 gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I]
 gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50]
 gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS]
          Length = 244

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 22/140 (15%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFID--------LSVH-TSQDSTG 441
           F   T  +D     + + I    +  +  T   +              L+VH  + +   
Sbjct: 6   FDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPEALAVHGLTTEFLA 65

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM-----RGFEDIMLM 492
                 E+      F  +     I HN  +D       L R G            D +L 
Sbjct: 66  DKPRFAEVAEQFLAFIADAEL--IAHNAAFDVKFFNAELQRIGRDPLNTHCENIVDSLLH 123

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           +  L  G+  + + ++  ++
Sbjct: 124 ARSLHPGK-RNSLDALCDRY 142


>gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 473

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 17/161 (10%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-------TLDQKD 418
             +  +           KL  +    F   T  +       + IA            +  
Sbjct: 247 FDFDLLEREMTADAKETKLSDLCFVVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVF 306

Query: 419 DTSFKVETIFIDLS--VHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           D            S  +H  +D+   +  + ++++     F ++   + + HN  +D  +
Sbjct: 307 DAYVNPGRAIPPASTRIHGVRDADVADAPSIEQVIPAFHHFSKDA--VLVAHNAPFDIGL 364

Query: 476 LHRY----GISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L +     GI       D +L+S V+      H + ++ Q+
Sbjct: 365 LRQQERATGIKWDHPVLDTVLLSAVVFGISQEHSLDALCQR 405


>gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41317]
          Length = 1463

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 68/205 (33%), Gaps = 24/205 (11%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILK 522
           D   ++    R+ +    +   D +  +  L      H +  + +++   L +       
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHHHMANYD 573

Query: 523 SRKSSIPIDKISDSQVQEHAIENSN 547
           +  +   +        ++H + + +
Sbjct: 574 AEATGRLLFIFIKEVAEKHGVTDLD 598


>gi|150007050|ref|YP_001301793.1| hypothetical protein BDI_0393 [Parabacteroides distasonis ATCC
           8503]
 gi|256840209|ref|ZP_05545717.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262381047|ref|ZP_06074185.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377471|ref|ZP_06987423.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19]
 gi|301311285|ref|ZP_07217213.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3]
 gi|149935474|gb|ABR42171.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256737481|gb|EEU50807.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296224|gb|EEY84154.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265490|gb|EFI07151.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19]
 gi|300830859|gb|EFK61501.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3]
          Length = 193

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 30/192 (15%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTSFKVETI 427
            I++ ++  + V+ L       F   T          K   + IST D      F++  I
Sbjct: 28  TILSKEEADKAVEYLLRFPIVGFDTETRPSFKKGQRYKISLMQISTDD--TCFLFRLNHI 85

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGF 486
            I                       L+KF ++   LKIG +++ D   +  R  I    F
Sbjct: 86  GIP--------------------ESLEKFLKSSSTLKIGLSLRDDFGAIRKRSDIEPANF 125

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  L +YV   G+   + AS+ + +    +K+I K ++ +     +     +++A  ++
Sbjct: 126 LD--LQNYV---GQFGIEDASLQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALDA 180

Query: 547 NVILQLWLLLRP 558
              L+++ LL  
Sbjct: 181 WACLRIYNLLNQ 192


>gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 288

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 72/200 (36%), Gaps = 26/200 (13%)

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK--------DIQQWVQKLETIGSASFK 393
           +++ TP+   +++    ++ P    +   ++NT+        + ++W+         +  
Sbjct: 62  SNQATPKVKQIDKPNVATERPKQQSAPAPVLNTQSVNHRININTKKWLNACNEF--VAID 119

Query: 394 IITDTMDAFHSKPIAIAISTLDQKD----DTSFKVETIFIDLSV----HTSQDSTGKNTL 445
           + T  ++  + K I +A             T+     I I   +    H + +      +
Sbjct: 120 LETTGLNPINDKIIEVAAVKFKDGQIIDRFTTLINPEIHIPSGITRINHITDEMVKDAPV 179

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRG-FEDIMLMSYVLDSGR 500
             E++  L  F E+   + + HN  +D   L  +    G  +   + D +     + SG 
Sbjct: 180 LAEVMPCLVNFIED--SILVMHNASFDLKFLKHHAMNFGHDINNSYIDTLPTCRNIFSGL 237

Query: 501 SSHDIASIAQKWLSYTRKEI 520
            ++ + +IA   L       
Sbjct: 238 ENYKLPTIAS-HLGICGDSF 256


>gi|84998414|ref|XP_953928.1| DNA repair protein (RAD2 nuclease ) [Theileria annulata]
 gi|65304926|emb|CAI73251.1| DNA repair protein (RAD2 nuclease homologue), putative [Theileria
           annulata]
          Length = 312

 Score = 42.7 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 13/129 (10%)

Query: 117 ADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKW 172
           A+ ++  Y     +  +     ++S D + +   +P         +E   I+   ++   
Sbjct: 163 ANTLMNNYAKKCVEFCDSGEDFVLSDDTNAIAYGAPNVIRDYLGSKEPSVINHMEMLNAL 222

Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE-----NILINASRIKQK 227
            +  ++ +    L G   +    IP IG +    +++ Y +LE     ++       K K
Sbjct: 223 KMTRDQFIDFCILLGYKAN--VRIPEIGPERTYNIIKRYKSLEKFLESDLYQQL--FKTK 278

Query: 228 KRRENILEY 236
           K  + +L+Y
Sbjct: 279 KATDLLLKY 287


>gi|330875459|gb|EGH09608.1| excinuclease ABC subunit C [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330968112|gb|EGH68372.1| excinuclease ABC subunit C [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 607

 Score = 42.7 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + GI G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGIAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|218263130|ref|ZP_03477349.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222915|gb|EEC95565.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
           DSM 18315]
          Length = 193

 Score = 42.7 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 13/199 (6%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA--FHSKPIAIAISTLDQKDDTSF 422
              YT  +  + + +   +  T        + DT  A  + S+  A+     D +   SF
Sbjct: 2   TQQYTHSITKEAVSELPLEEFTGRIIVIDTLKDTEKAVSYLSEFQAVGF---DTETRPSF 58

Query: 423 KVETIFIDLSVHTSQDST--GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRY 479
           K    +    +  S D           +I   L++F  NE   KIG +++ D   +  R 
Sbjct: 59  KKGQRYKISLMQISTDEACFLFRLNRIDIPKVLEEFLANEKVQKIGLSLRDDFGAMQKRK 118

Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
            I    F D  L +YV   G+   + AS+ + +     K+I K ++ S     +     +
Sbjct: 119 DIQPANFLD--LQNYV---GQFGIEDASLQKIYAILFNKKISKGQRLSNWEADVLSDAQK 173

Query: 540 EHAIENSNVILQLWLLLRP 558
           ++A  ++   L+++  L+ 
Sbjct: 174 KYAALDAWACLKIYNQLKQ 192


>gi|213970620|ref|ZP_03398746.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. tomato T1]
 gi|301386327|ref|ZP_07234745.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato Max13]
 gi|302060908|ref|ZP_07252449.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato K40]
 gi|302133961|ref|ZP_07259951.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924617|gb|EEB58186.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. tomato T1]
          Length = 607

 Score = 42.7 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + GI G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGIAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|28870199|ref|NP_792818.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|32130288|sp|Q880X7|UVRC_PSESM RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|28853445|gb|AAO56513.1| excinuclease ABC, C subunit [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331015423|gb|EGH95479.1| excinuclease ABC subunit C [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 607

 Score = 42.7 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 449 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 501 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + GI G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 TLEGIAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 600


>gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 398

 Score = 42.7 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 59/192 (30%), Gaps = 30/192 (15%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET-IFIDLSVHTSQDSTGKNT 444
                   + T        +   I +  +     +++         +     Q +   + 
Sbjct: 35  EQPLVFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDA 94

Query: 445 LTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYV 495
           + ++    + L    FE  +  L + HN  +D+  L     R G +        + +S  
Sbjct: 95  MVRDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRA 154

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L    S H + ++  +                +P         +  A+ +++++ Q W  
Sbjct: 155 LFPRESRHGLDALIARH-------------GLVP-------AARHRALADADLLWQFWRH 194

Query: 556 LRPKLIVEKLLH 567
           L   +  E+L  
Sbjct: 195 LHDVVPRERLRD 206


>gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
          Length = 1442

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS--------- 432
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDNATYVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFVKPIQQINENVTNL 461

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGIS-MRGFE- 487
            + SQ+        K  L  +K+ F++        I  +I +    L ++G+  ++    
Sbjct: 462 TNISQEMVNNAIDEKTALLKIKEIFDDHILVAHNGINFDINFINQRLLKWGLEPLKNPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++S  ++  +S H + +I +K+      EI 
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDEIA 554


>gi|327259620|ref|XP_003214634.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
           [Anolis carolinensis]
          Length = 437

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L+   E++H LK+ H+ ++    L H+YGI +    D  +   +  S  +      +   
Sbjct: 142 LQIILEDQHILKVIHDCRWLSDCLSHQYGIELTNVFDTQVADVMQFSVETG-GFLPLRIS 200

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQ 539
            L     E L   +  +    +   +++
Sbjct: 201 NLQECLIEYLGMSRKDVSFMDLRQREIE 228


>gi|159482675|ref|XP_001699393.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272844|gb|EDO98639.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 785

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLM 492
           L+   E+EH  K+ ++++ D   L   YG+ +RG  D+ L 
Sbjct: 60  LRGLLEDEHVPKLLYDVRSDAAALWSEYGVRLRGVTDLQLA 100


>gi|83308139|emb|CAJ29372.1| gp5.4 protein [Enterobacteria phage K1F]
          Length = 57

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976
           DEL      +EI   +  I     +      N +  L    K+   W+E +
Sbjct: 7   DELQIACRTQEIAERTVEIAQLAMRKVGEFYNFKCVLDTEGKIGPTWKECH 57


>gi|74141150|dbj|BAE35888.1| unnamed protein product [Mus musculus]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I+    EA+   A      +  G     I+ D D+    +         
Sbjct: 503 QELLRLFGVPYIQAP-MEAEAQCAMLDLTDQTSGT----ITDDSDIWLFGARHVYKNFFN 557

Query: 159 KEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--N 213
           K + ++    +  +   G+   K++ L  L G   D   GIP +G  TA  +L E+    
Sbjct: 558 KNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG--SDYTEGIPTVGCVTAMEILNEFPGRG 615

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255
           L+ +L                E+   A+ ++K+     D  +
Sbjct: 616 LDPLL-------------KFSEWWHEAQNNKKVAENPYDTKV 644


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAI---------STLDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A +   I +A          ++ D+  D    +    ++L+  
Sbjct: 418 LTDATYIVFDVETTGLSAVYDTIIELAAVRMHKGNVEASFDEFIDPGHPLSRTTVELTGI 477

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFED 488
           T +   G  +  +E+L   ++F  +E  + + HN  +D   L     +YGI        D
Sbjct: 478 TDEMVRGSKS-EEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVID 534

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L        +  +++K+
Sbjct: 535 TLELARYLYPEFKRFGLGVLSKKF 558


>gi|289626299|ref|ZP_06459253.1| excinuclease ABC subunit C [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
          Length = 261

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 103 YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 154

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 155 GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 206

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 207 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 254


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAI---------STLDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A +   I +A          ++ D+  D    +    ++L+  
Sbjct: 418 LTDATYIVFDVETTGLSAVYDTIIELAAVRMHKGNVEASFDEFIDPGHPLSRTTVELTGI 477

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFED 488
           T +   G  +  +E+L   ++F  +E  + + HN  +D   L     +YGI        D
Sbjct: 478 TDEMVRGSKS-EEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVID 534

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L        +  +++K+
Sbjct: 535 TLELARYLYPEFKRFGLGVLSKKF 558


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTL--DQKDDTSFKVETIFIDLSV------HT 435
           LE      F + T  +   +   I +A   +   Q  D           LS         
Sbjct: 423 LEEATYVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDKYESFANPHHPLSATTIELTGI 482

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDI 489
           + D        ++++     F  +   + + HN  +D   L     ++G+        D 
Sbjct: 483 TDDMVRHAPEVEQVIKEFHAFIGDG--IVVAHNASFDIGFLYTGYKKFGLEGTTHPVIDT 540

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++ +L     +H + ++ +K+
Sbjct: 541 LELARLLYPTMKNHRLNTLCKKF 563


>gi|5758316|gb|AAD50780.1|AF162793_1 XPG variant [Drosophila melanogaster]
          Length = 1257

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 96/342 (28%), Gaps = 44/342 (12%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 884  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATDLTHGT--ITDDSDIWLFGGRTVYKNFF 938

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 939  AQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGR 996

Query: 215  ENILINASRIKQKKRRENILEYAE--------------TARLS--RKL------------ 246
            +    N   I  +   + ++++ +              +ARL+  +KL            
Sbjct: 997  D---ANGPGICNQSVLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSG 1053

Query: 247  --VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
              V       I    +       +   +        F    ++           I    +
Sbjct: 1054 AVVEAYLAPTIDDNRDAFSWGTPDVESIRE-FTRKSFGWTTSKTDDILMPVMKKINEKKI 1112

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              +            + +    K  Q +          + + P+K+   R  K +    +
Sbjct: 1113 QGSIRNYFTAKSALRVQQPHVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDD 1172

Query: 365  NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
            + +   +       +  ++     S        +      KP
Sbjct: 1173 DLAIADVATKAARPKRGKRKAAPESVVLDGELPSTSQSIPKP 1214


>gi|332029719|gb|EGI69598.1| DNA repair protein complementing XP-G cells-like protein
           [Acromyrmex echinatior]
          Length = 417

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 12/117 (10%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM----QLVSPTTCL 154
           +   + FGIP I     EA+   A    I   +G     I+ D D+     Q V      
Sbjct: 45  QDLLRLFGIPYIIAP-MEAEAQCAYLEQIKLTDGT----ITDDSDIWLFGGQCVYKNFFN 99

Query: 155 YDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
           ++  +  +     +   + +   +++ L  L G   D   G+ G+G  TA  +L  +
Sbjct: 100 HN-KRMLRFRACDIQHHFKLNRNQLIQLALLVG--SDYTTGVAGVGPVTALEILAAF 153


>gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
          Length = 374

 Score = 42.7 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 60/194 (30%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
                     + T    +   +   I +         T   +      +     Q +   
Sbjct: 10  ACEQPLVFVDLETTGGSSVEHRITEIGVVEIGPLGVSTWTSLVNPGQSIPPFIQQLTGIS 69

Query: 443 NTLTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
             + ++    + L    FE  +  L + HN  +D+  L     R G++        + +S
Sbjct: 70  EAMVRDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNPDVLCTVRLS 129

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    S H + ++ ++                +P         +  A+ +++++ Q W
Sbjct: 130 RALFPRESRHGLDALIERH-------------GLVP-------AARHRALADADLLWQFW 169

Query: 554 LLLRPKLIVEKLLH 567
             L   + +E+L  
Sbjct: 170 RHLHEIVPLERLRD 183


>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1438

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD-----DTSFKVETIFIDLSVHTSQD 438
           L+T     F I T  +    +K I IA +    +        +F      I  ++    +
Sbjct: 416 LKTATYVVFDIETTGLSVTQNKIIEIA-AVKMHEGKEIDRYATFVNPHERIPYNIQQLTN 474

Query: 439 STGKNT-LTKEILSYLKKF--FENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
              +      ++   +K+F  F  +  L + HN ++D       L + G+        D 
Sbjct: 475 INDEMVKDAPDVEPVMKEFVAFAGDAVL-VAHNARFDIGFIQATLRKMGLPEMTNPVLDT 533

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++ +L     +H + ++  K+
Sbjct: 534 LELARLLFPTMKNHRLNTLTSKY 556


>gi|255563614|ref|XP_002522809.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223538047|gb|EEF39660.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 149

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKL-VLHRYGISMRGFEDIMLMSYVLDSGRSSH----DI 505
             L+   E+   LK+G  +  D + V   Y +S++  ED   +SY+             +
Sbjct: 22  KSLQSLLEDSALLKVGVGVGNDSVKVFTDYNVSVKAVED---LSYLARKKIGGKPKSWSL 78

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLR 557
            S+ +       KE+ K  K  +   ++     +  E+A  ++    QL+ +LR
Sbjct: 79  QSLTE---MLVCKELGKPNKIRLGNWEVDVLSKEQLEYAATDAFASWQLYQVLR 129


>gi|170291015|ref|YP_001737831.1| flap endonuclease-1 [Candidatus Korarchaeum cryptofilum OPF8]
 gi|226700953|sp|B1L6R9|FEN_KORCO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|170175095|gb|ACB08148.1| XPG I domain protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 342

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 21/136 (15%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  G+P ++       +  A   ++A K     T  S D D +   +P      T
Sbjct: 136 CKTILKLMGVPIVQAP----SEGEAQAAHMAMKGDVWAT-ASQDYDSLLFGAPRLIRNLT 190

Query: 158 VKEEK---------------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202
           +  ++               I++E V+K+ GI  E+++ +  L G    N+ G+ GIG K
Sbjct: 191 ITGKRKLPGKEVYVDINPELIELESVLKRNGISREQLIMIGILVGTDY-NLGGVKGIGVK 249

Query: 203 TAALLLQEYGNLENIL 218
            A  L+++Y   E++ 
Sbjct: 250 RALELVKKYKRPEDLF 265


>gi|283785541|ref|YP_003365406.1| ribonuclease D [Citrobacter rodentium ICC168]
 gi|282948995|emb|CBG88598.1| ribonuclease D [Citrobacter rodentium ICC168]
          Length = 377

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/202 (10%), Positives = 55/202 (27%), Gaps = 29/202 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   ++         +
Sbjct: 2   NYQMITTDDALATLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGERVALIDPHGIS 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDTAITKYLHAGSEDLEVFLNAFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--LSWGFASMVEEYTGVA---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEKLL 566
           +   +L +   L  +      L
Sbjct: 155 DVWYLLPIAGKLMAETEAAGWL 176


>gi|242019297|ref|XP_002430098.1| DNA excision repair protein, putative [Pediculus humanus corporis]
 gi|212515179|gb|EEB17360.1| DNA excision repair protein, putative [Pediculus humanus corporis]
          Length = 1052

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 13/130 (10%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P I     EA+   A    +   EG     I+ D D+  L   T    +  
Sbjct: 672 QALLKLFGVPYIVAP-MEAEAQCAALDILGLTEGT----ITDDSDIW-LFGGTVVYKNFF 725

Query: 159 KEEK----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            ++K        ++ K + +  E ++ L  L G   D   G+ GIG  TA  +L  + + 
Sbjct: 726 NQKKHVLEYTSLNIQKNFKLNREDLIRLAMLVG--SDYTLGLTGIGPVTAMEILACFPSP 783

Query: 215 EN-ILINASR 223
            N IL     
Sbjct: 784 TNEILEGLEN 793


>gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
 gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 61/194 (31%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
                     + T    +   +   I +         T   +      +     Q +   
Sbjct: 10  ASEQPLVFVDLETTGGSSADHRITEIGVVEIGPLGVSTWTSLVNPGQAIPPFIQQLTGIS 69

Query: 443 NTLTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
           + + ++    + L    FE  +  L + HN  +D+  L     R G++        + +S
Sbjct: 70  DAMVRDAPTFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLTFNPDVLCTVRLS 129

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    S H + ++ ++                +P         +  A+ +++++ Q W
Sbjct: 130 RALFPRESRHGLDALIERH-------------GLVP-------AARHRALADADLLWQFW 169

Query: 554 LLLRPKLIVEKLLH 567
             L   + +E+L  
Sbjct: 170 RQLHEIVPLERLRD 183


>gi|78706854|ref|NP_001027232.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
 gi|10728671|gb|AAG22424.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
          Length = 1257

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 96/342 (28%), Gaps = 44/342 (12%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 884  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATDLTHGT--ITDDSDIWLFGGRTVYKNFF 938

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 939  AQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGQ 996

Query: 215  ENILINASRIKQKKRRENILEYAE--------------TARLS--RKL------------ 246
            +    N   I  +   + ++++ +              +ARL+  +KL            
Sbjct: 997  D---ANGPGICNQSVLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSG 1053

Query: 247  --VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
              V       I    +       +   +        F    ++           I    +
Sbjct: 1054 AVVEAYLAPTIDDNRDAFSWGTPDVESIRE-FTRKSFGWTTSKTDDILMPVMKKINEKKI 1112

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              +            + +    K  Q +          + + P+K+   R  K +    +
Sbjct: 1113 QGSIRNYFTAKSALRVQQPHVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDD 1172

Query: 365  NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
            + +   +       +  ++     S        +      KP
Sbjct: 1173 DLAIADVATKAARPKRGKRKAAPESVVLDGELPSTSQSIPKP 1214


>gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1463

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|157803677|ref|YP_001492226.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157784940|gb|ABV73441.1| Ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 284

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N K +++  ++L +    S     +    ++++      S +  K +    +    
Sbjct: 2   QMIDNQKTLEEVCKQLASKTCLSIDTEFERRYTYYAQL-----SIIQVKAENYCGI---- 52

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFE 487
                         + L+   L+   K   + +  KI H  + D  + +    ++     
Sbjct: 53  -------------IDALSNVDLNIFNKLLADNNITKIFHAPREDLEIFYNLFKTLPSNVF 99

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + + +   G+       +  K        I K+ + S  + +   S +  +A+ +  
Sbjct: 100 DIQIAANICGFGKQL-SYDDLCYKLFGIA---IDKTHQKSNWLKRPITSDMLNYAMLDVE 155

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +++  L   +I   L++ Y+ 
Sbjct: 156 YLYKIYKELNNIIIRSNLVNKYQT 179


>gi|5712619|gb|AAD47568.1|AF125578_1 DNA repair endonuclease [Drosophila melanogaster]
          Length = 1236

 Score = 42.7 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 96/342 (28%), Gaps = 44/342 (12%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 863  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATDLTHGT--ITDDSDIWLFGGRTVYKNFF 917

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 918  AQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGQ 975

Query: 215  ENILINASRIKQKKRRENILEYAE--------------TARLS--RKL------------ 246
            +    N   I  +   + ++++ +              +ARL+  +KL            
Sbjct: 976  D---ANGPGICNQSVLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSG 1032

Query: 247  --VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
              V       I    +       +   +        F    ++           I    +
Sbjct: 1033 AVVEAYLAPTIDDNRDAFSWGTPDVESIRE-FTRKSFGWTTSKTDDILMPVMKKINEKKI 1091

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              +            + +    K  Q +          + + P+K+   R  K +    +
Sbjct: 1092 QGSIRNYFTAKSALRVQQPHVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDD 1151

Query: 365  NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
            + +   +       +  ++     S        +      KP
Sbjct: 1152 DLAIADVATKAARPKRGKRKAAPESVVLDGELPSTSQSIPKP 1193


>gi|297600506|ref|NP_001049313.2| Os03g0205400 [Oryza sativa Japonica Group]
 gi|255674294|dbj|BAF11227.2| Os03g0205400 [Oryza sativa Japonica Group]
          Length = 1470

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 10/123 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--CLY 155
            +   Q FG+P I     EA+   A        +G    +++ D D+    +      ++
Sbjct: 860 CQELLQMFGLPYIIAP-MEAEAQCAYMEMTNLVDG----VVTDDSDVFLFGARNVYKNIF 914

Query: 156 DTVKE-EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           D  K  E   ++ +  + G+  E+++ +  L G   D   GI GIG   A  +   +   
Sbjct: 915 DDRKYVETYLMKDIESELGLTREQLIRMAMLLG--SDYTEGISGIGIVNAIEVAHAFPEE 972

Query: 215 ENI 217
           + +
Sbjct: 973 DGL 975


>gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
          Length = 1463

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1454

 Score = 42.7 bits (99), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 70/241 (29%), Gaps = 18/241 (7%)

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
           L        D     +  +      +E  G+    +I +       +  +++D +   + 
Sbjct: 320 LEKENTKKEDTAEEKMVELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSY 379

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI--QQWVQKLETIGSASFKIITDTMDA 401
               +        +     I       I +   +      +K++      F I T  +++
Sbjct: 380 PAAFKTAKKFSTDEEKMKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIETTGLNS 439

Query: 402 FHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYL 453
             ++ I I    +      D   ++      +  H ++      +         E++   
Sbjct: 440 HTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQVANEPKIDEVIGKF 499

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FEDIMLMSYVLDSGRSSHDIAS 507
             F  +   + + HN  +D   + R       I  +    D + M+  L      + +  
Sbjct: 500 VDFIGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGD 557

Query: 508 I 508
           +
Sbjct: 558 L 558


>gi|296117768|ref|ZP_06836352.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
 gi|295969499|gb|EFG82740.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
          Length = 411

 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 26/216 (12%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             S   +       +V+T+   +   ++   GS    I T+   +F              
Sbjct: 1   MTSPRRVPEGGIPTVVSTRAGVEDAARILAQGSGPIAIDTERASSFRY------------ 48

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
            DD +F ++    D  +           +  ++   L      E    + H    D   L
Sbjct: 49  -DDRAFLIQLRRADTPIFL----VAPEGIRDDVREVLAPVVNGE--KWVVHAAVTDLTSL 101

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
              G+      D  +   +L  G  + ++AS+ +++L             +    +   S
Sbjct: 102 AWLGLYPGSLFDTEVAGRLL--GIQNPNLASVTEEFLGIELD----KGYGATDWSRFPLS 155

Query: 537 QVQE-HAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           + Q  +A  + + +L+L   +  +L  E      + 
Sbjct: 156 KAQLIYAALDVDTLLELADEMAYELEQEDKTEWAQE 191


>gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
          Length = 1442

 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV-------- 433
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINENITNL 461

Query: 434 -HTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGIS-MRGFE- 487
            + SQ+        K  L  +K+ F N        I  +I +    L ++G+  ++    
Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFANHILVAHNGISFDINFINQRLLKWGLEPLKNPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++S  ++  +S H + +I +K+      E+ 
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDEVA 554


>gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 1442

 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV-------- 433
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINENITNL 461

Query: 434 -HTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGIS-MRGFE- 487
            + SQ+        K  L  +K+ F N        I  +I +    L ++G+  ++    
Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFANHILVAHNGISFDINFINQRLLKWGLEPLKNPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++S  ++  +S H + +I +K+      E+ 
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDEVA 554


>gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47901]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54]
 gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae G54]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41301]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|157375657|ref|YP_001474257.1| ribonuclease D [Shewanella sediminis HAW-EB3]
 gi|157318031|gb|ABV37129.1| ribonuclease D [Shewanella sediminis HAW-EB3]
          Length = 369

 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 32/212 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  I +   + + V +                  ++++   I             K   
Sbjct: 3   AFQYIDDDASLTELVSQYRQSTLLVLDTEFVRTRTYYARLGLI--------QAYDGKTLA 54

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486
           +   ++V                LS             + H+   D  V  R G   +  
Sbjct: 55  LIDPIAVGN--------------LSEFWSLLTEPEITTVLHSCSEDLEVFARNG-QCQPI 99

Query: 487 --EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAI 543
              D  + +  L         A + ++ L+          +S     K   S+ Q  +A 
Sbjct: 100 RLFDSQIAA-SLCGFGHGLGYAKLVEQTLNIALD----KGESRTDWMKRPLSKAQLTYAA 154

Query: 544 ENSNVILQLWLLLRPKLIV-EKLLHVYERLDK 574
            +   + +L+  L  KL   ++L  V+E  ++
Sbjct: 155 NDVYYLYELYPQLIQKLEDTDRLDWVFEEGER 186


>gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180]
 gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1465

 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           L       F + T  + A ++  I IA S        +   +       LS  T++ +  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 442 KNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFEDI 489
            +   ++      +L   + F ++   + + HN  +D   ++    R+ +    +   D 
Sbjct: 482 TDKHLQDAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDT 539

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           +  +  L      H +  + +++
Sbjct: 540 LEFARNLYPEYKRHGLGPLTKRF 562


>gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6]
 gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39]
 gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6]
 gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae D39]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4]
 gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae
           TIGR4]
 gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae TIGR4]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|323303082|gb|EGA56885.1| Exo1p [Saccharomyces cerevisiae FostersB]
          Length = 607

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 43/270 (15%)

Query: 4   ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           E  +  +DG ++++RA  A         G P +    F    + LL+  + E       +
Sbjct: 23  EGEVLAIDGYAWLHRA--ACSCAYELAMGKPTDKYLQFFIKRFSLLKTFKVEPY-----L 75

Query: 64  IFD-------YPAVTFRNEIYPDYK--------ANRPKIPEMLLPQLPLVRLATQAFGIP 108
           +FD           + R +   + K            K       +   +        I 
Sbjct: 76  VFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYFQKCVDITPEMAKCIIC 135

Query: 109 AIEIQG-------FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
             ++ G       FEAD  +         +G    IIS D DL+               E
Sbjct: 136 YCKLNGIRYIVAPFEADSQMVYLEQKNIVQG----IISEDSDLLVFGCRRLITKLNDYGE 191

Query: 162 --KIDIEHVIK---KW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             +I  ++ IK   K+    +  E+++ +  L+G   D   GIP +G  TA  L++ +  
Sbjct: 192 CLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSG--CDYTNGIPKVGLITAMKLVRRFNT 249

Query: 214 LENILINASRIKQKKRRENILEYAETARLS 243
           +E I+++  R  +    +  +   E A L+
Sbjct: 250 IERIILSIQREGKLMIPDTYINEYEAAVLA 279


>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 1454

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 70/241 (29%), Gaps = 18/241 (7%)

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
           L        D     +  +      +E  G+    +I +       +  +++D +   + 
Sbjct: 320 LEKENTKKEDTAEEKMVELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSY 379

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI--QQWVQKLETIGSASFKIITDTMDA 401
               +        +     I       I +   +      +K++      F I T  +++
Sbjct: 380 PAAFKTAKKFSTDEEKMKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIETTGLNS 439

Query: 402 FHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYL 453
             ++ I I    +      D   ++      +  H ++      +         E++   
Sbjct: 440 HTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQVANEPKIDEVIGKF 499

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FEDIMLMSYVLDSGRSSHDIAS 507
             F  +   + + HN  +D   + R       I  +    D + M+  L      + +  
Sbjct: 500 VDFIGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGD 557

Query: 508 I 508
           +
Sbjct: 558 L 558


>gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Taiwan19F-14]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 769

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 63/185 (34%), Gaps = 19/185 (10%)

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL-ETIGSASFKIITDTMDAF 402
             TPQ+          +       +     ++   +   +L   +    F   T  ++  
Sbjct: 533 AATPQEQAEAETYLRGESRPEYYDFDLFAWSEKSHELDDRLLSELSYTVFDTETTGLNPS 592

Query: 403 HS-KPIAIA----ISTLDQKDDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILS 451
              + I +     ++    + ++  ++      L+  +++      +         ++L 
Sbjct: 593 QGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITSEMLRGQPTIDKVLP 652

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM-RGFEDIMLMSYVLDSGRSSHDIA 506
               F  +   + I HN  +D   L     + G+       D +L+S V+   + SH + 
Sbjct: 653 AFHAFAAD--TVLIAHNAAFDMRFLQLKEEQTGLRFDHPVIDTLLLSAVVHPNQESHRLE 710

Query: 507 SIAQK 511
           +IA++
Sbjct: 711 AIAER 715


>gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1442

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 60/204 (29%), Gaps = 42/204 (20%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ---- 437
           + ++      F + T        + I I  +     +    +             +    
Sbjct: 423 EAVKDATYVVFDLETTGFSPVTDEIIEIG-AVKIHGNKILDRFSAFVCPGREIPPEVQEL 481

Query: 438 -----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM------RGF 486
                +         E+L     F  +   + + HN ++D   L      +      +  
Sbjct: 482 TGITNNMVSDAPPIAEVLPKFIDFVGDA--VLVAHNAQFDTGFLRANMEKILNRTLAQPV 539

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH--AIE 544
            D + ++  L     +H + ++A+++                      + +++ H  A++
Sbjct: 540 LDTLGLARGLFPDMKNHKLKTLAKEF----------------------NVKLENHHRAVD 577

Query: 545 NSNVILQLWLLLRPKLIVEKLLHV 568
           ++    QL +    +L    +  +
Sbjct: 578 DAEATAQLLIKFLERLAEHNIDTL 601


>gi|255552654|ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis]
 gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3, putative [Ricinus communis]
          Length = 1641

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--CLY 155
             +   Q FG+P I     EA+   A        +G    +++ D D+    +      ++
Sbjct: 970  CQELLQMFGLPYIIAP-MEAEAQCAYMELANLVDG----VVTDDSDVFLFGARNVYKNIF 1024

Query: 156  DTVKE-EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            D  K  E   ++ + ++ G+  EK++ +  L G   D   GI GIG   A  ++  +   
Sbjct: 1025 DDRKYVETYFMKDIERELGLTREKLIRMALLLG--SDYTEGISGIGIVNAIEVVNAFPEE 1082

Query: 215  ENI 217
            + +
Sbjct: 1083 DGL 1085


>gi|195026828|ref|XP_001986344.1| GH20576 [Drosophila grimshawi]
 gi|193902344|gb|EDW01211.1| GH20576 [Drosophila grimshawi]
          Length = 995

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 114/295 (38%), Gaps = 38/295 (12%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY- 452
            +T+ +         IA+S   +  +   K E   I++     +           ++S  
Sbjct: 529 FVTEALLDLAKDESNIAVSLDCEGINLGVKGEITLIEIGTARGEAFLFDVQTCPAMVSDG 588

Query: 453 -LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVL---DSGRSSH---- 503
            LK   E++  +K+ H+ + D + L+ ++GI +R   D      +L   ++G+  +    
Sbjct: 589 GLKTLLEHDQVIKVIHDCRNDAVNLYQQFGILLRNVFDTQAAHAILQYQENGKQVYKAKY 648

Query: 504 -DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL- 555
             + S+ +++      +    K+I +  +       ++   +  +A  +  V++   L  
Sbjct: 649 ISLNSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMML-YAAGDVLVLIHDQLFG 707

Query: 556 -LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEE 611
            L  ++  E    V    +     ++ Q++   ++I +   ++VS E   + + L    +
Sbjct: 708 NLAQQIKPEN--RVLFS-ELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLAQTSK 763

Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           +I         + S +++   L   +      K +   +   A+ LE++    NP
Sbjct: 764 SI---------VLSNREI--RLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNP 807


>gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270]
 gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1465

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           L       F + T  + A ++  I IA S        +   +       LS  T++ +  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 442 KNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFEDI 489
            +   ++      +L   + F ++   + + HN  +D   ++    R+ +    +   D 
Sbjct: 482 TDKHLQDAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDT 539

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           +  +  L      H +  + +++
Sbjct: 540 LEFARNLYPEYKRHGLGPLTKRF 562


>gi|78706850|ref|NP_001027230.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
 gi|78706852|ref|NP_001027231.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
 gi|5051952|gb|AAD38375.1|AF144092_1 nucleotide excision repair protein MUS201 [Drosophila melanogaster]
 gi|7297419|gb|AAF52678.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
 gi|28380312|gb|AAO41169.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
          Length = 1236

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 96/342 (28%), Gaps = 44/342 (12%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 863  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATDLTHGT--ITDDSDIWLFGGRTVYKNFF 917

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 918  AQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGQ 975

Query: 215  ENILINASRIKQKKRRENILEYAE--------------TARLS--RKL------------ 246
            +    N   I  +   + ++++ +              +ARL+  +KL            
Sbjct: 976  D---ANGPGICNQSVLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSG 1032

Query: 247  --VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
              V       I    +       +   +        F    ++           I    +
Sbjct: 1033 AVVEAYLAPTIDDNRDAFSWGTPDVESIRE-FTRKSFGWTTSKTDDILMPVMKKINEKKI 1091

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              +            + +    K  Q +          + + P+K+   R  K +    +
Sbjct: 1092 QGSIRNYFTAKSALRVQQPHVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDD 1151

Query: 365  NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
            + +   +       +  ++     S        +      KP
Sbjct: 1152 DLAIADVATKAARPKRGKRKAAPESVVLDGELPSTSQSIPKP 1193


>gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1]
 gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit
           family [Aromatoleum aromaticum EbN1]
          Length = 478

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 60/207 (28%), Gaps = 42/207 (20%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAI-----------STLDQKDDTSFKVETIFID 430
             L   G A   I T    A H     IAI           S+L + D            
Sbjct: 11  DFLRPAGLAFVDIETTGTTASHDSITEIAIIEIGEDGVREWSSLVRPDSRIPDYIERMTG 70

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISMRG- 485
           +S H   D+     L + +   L         + + HN ++D         R G+  R  
Sbjct: 71  ISNHMVADAPTFAELAETVFDRL------HERVFVAHNARFDHGFIRAAFRRLGVDFRPK 124

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
               + +S  L      H++ ++  +                       + + Q  A+ +
Sbjct: 125 VLCTVRLSRRLYPQERRHNLDALIARH--------------------GLEVEAQHRALGD 164

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERL 572
           +  + Q W  +  +     L  +   L
Sbjct: 165 AQALWQFWQRVHRQFGAAHLEPMLREL 191


>gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus pyogenes M49 591]
 gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131]
 gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1465

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 51/143 (35%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           L       F + T  + A ++  I IA S        +   +       LS  T++ +  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGI 481

Query: 442 KNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFEDI 489
            +   ++      +L   + F ++   + + HN  +D   ++    R+ +    +   D 
Sbjct: 482 TDKHLQDAKPLVTVLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDT 539

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           +  +  L      H +  + +++
Sbjct: 540 LEFARNLYPEYKRHGLGPLTKRF 562


>gi|332025467|gb|EGI65632.1| Exonuclease 3'-5' domain-containing protein 2 [Acromyrmex
           echinatior]
          Length = 606

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 57/141 (40%), Gaps = 6/141 (4%)

Query: 452 YLKKFFENEHFLKIGHNIKYDKL-VLHRYGISMRGFED--IMLMSYVLDSGRSSHDIASI 508
            LK+   ++H LK+G +   D   ++  YG  + G  D   +  ++ L S      +A++
Sbjct: 135 KLKELLASKHILKVGISSFEDGHKIVKDYGCRVNGTLDLRTLAENFNLPS---RKSLAAM 191

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
             ++L+    +I++ R        ++D QV   A +    ++    +++ +     L   
Sbjct: 192 CLEYLNIEMDKIIEVRCGDWDASTLTDEQVAYAACDALASVIVYHKIMQKEKEKYTLWQR 251

Query: 569 YERLDKPMIDVVSQMEITGIQ 589
                  ++     + I G+ 
Sbjct: 252 VGIYLYNILSSDINVRIHGVP 272


>gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
          Length = 375

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 59/192 (30%), Gaps = 30/192 (15%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET-IFIDLSVHTSQDSTGKNT 444
                   + T        +   I +  +     +++         +     Q +   + 
Sbjct: 12  EQPLVFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDA 71

Query: 445 LTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYV 495
           + ++    + L    FE  +  L + HN  +D+  L     R G +        + +S  
Sbjct: 72  MVRDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRA 131

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L    S H + ++  +                +P         +  A+ +++++ Q W  
Sbjct: 132 LFPRESRHGLDALIARH-------------GLVP-------AARHRALADADLLWQFWRH 171

Query: 556 LRPKLIVEKLLH 567
           L   +  E+L  
Sbjct: 172 LHDVVPRERLRD 183


>gi|161617955|ref|YP_001595435.1| putative 5'-3' exonuclease [Enterobacteria phage phiEcoM-GJ1]
 gi|150416374|gb|ABR68752.1| putative 5'-3' exonuclease [Enterobacteria phage phiEcoM-GJ1]
          Length = 345

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 35/240 (14%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61
            K+  L LVDG    + +  A     +  + +    I    +M  K+ +   K   A+  
Sbjct: 7   SKKRVLLLVDGDMVAF-SHCAAEEYGKDSEDINFAKIQ--MSMDSKM-EFLAKRVGATEV 62

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKI--PEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119
                 P+ TFRN +  +YK NR  +  PE L      + +A        + ++G EADD
Sbjct: 63  VTCI-SPSKTFRNVLAENYKGNRDDVWRPENLKNAKAHLMVAWNG-----VWMKGLEADD 116

Query: 120 IIATYTYIAEKEGF------------------AVTIISTDKDLMQLVSPTTCLYDTVKEE 161
           ++A +     +                      V I S DKDL Q +         +K  
Sbjct: 117 LLAVFARHEYEMTMGKRNEIKSLKRIGPCTYDEVWIASLDKDLRQ-IGQNGGAGPVIKHY 175

Query: 162 KIDIE--HVIKKWGIPPEKMVCLQALTGDSID-NIPGIPGIGYKTAALLLQEYGNLENIL 218
           + + E   + +K  + P+    L+ +  D+       + G G K     L    + +N++
Sbjct: 176 QWERETQGIGEK-VVTPKDYGELKLIIKDNGKTKKKEVKGNGPKFFLHQLLIGDSTDNVM 234


>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
 gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
          Length = 870

 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 91/265 (34%), Gaps = 29/265 (10%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-------TLDQKDDTSFKVETI 427
           +     + + E      F + +  +D    + I IA          +D+ +      + +
Sbjct: 490 EKFSLLINEFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKPV 549

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL------HRYG 480
                VH   D      + ++    LK+F E ++  + +GHN++YD  +L      +  G
Sbjct: 550 KDSYYVHGFSDEM-LQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLG 608

Query: 481 I-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
               + F D + +      G  ++ + ++++ + +  +             D I+  ++ 
Sbjct: 609 KPKFKTFYDTLDIYRRFYPGNINYKLENLSKVYDTKHKPS------HDAMDDIIATGELL 662

Query: 540 EHAIENSNVI--LQLWLLLRPKLIV-----EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
             AI    +   ++   L+   L       +KL  +++  +      +    + G  I  
Sbjct: 663 VRAINKKIIPTSMERMALMSKHLKAFTAISKKLNELFQIAESKRPYELVACVMNGFNIKS 722

Query: 593 DLLKQVSAEISKNLLSLEENIYDLS 617
                 + E    L  L     DL 
Sbjct: 723 MYAGDENKEKLNRLRDLYALFRDLD 747


>gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus
           pneumoniae 670-6B]
 gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 670-6B]
 gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17545]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
 gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200]
 gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
 gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|152996550|ref|YP_001341385.1| ribonuclease D [Marinomonas sp. MWYL1]
 gi|150837474|gb|ABR71450.1| ribonuclease D [Marinomonas sp. MWYL1]
          Length = 384

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 63/198 (31%), Gaps = 29/198 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + + + +  W      +   +                         +  T F +  +   
Sbjct: 18  VADNESLASWCDYWADLPVIAVDTEF-------------------IRRTTYFPITGL--- 55

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI 489
           + +     +   + L+ +    L+    +   +K+ H    D  V  R  G+    F D 
Sbjct: 56  IQISEGDKAVLIDPLSIDEWEPLRNLMVDPSVMKVFHACSEDLDVFDRLLGVLPTPFYDT 115

Query: 490 ML-MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            +  +Y   S + S     +  ++L     E+ K    S  + +      + +A  +   
Sbjct: 116 QIGEAYA--SAQWSLSYVKLIHEYLQI---EVAKDETRSDWVQRPLTDAQKRYAALDVVY 170

Query: 549 ILQLWLLLRPKLIVEKLL 566
           + +++ +   +L  + +L
Sbjct: 171 LAKVYPMQIARLEAKNML 188


>gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
          Length = 375

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 59/192 (30%), Gaps = 30/192 (15%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET-IFIDLSVHTSQDSTGKNT 444
                   + T        +   I +  +     +++         +     Q +   + 
Sbjct: 12  EQPLVFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDA 71

Query: 445 LTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYV 495
           + ++    + L    FE  +  L + HN  +D+  L     R G +        + +S  
Sbjct: 72  MVRDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRA 131

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L    S H + ++  +                +P         +  A+ +++++ Q W  
Sbjct: 132 LFPRESRHGLDALIARH-------------GLVP-------AARHRALADADLLWQFWRH 171

Query: 556 LRPKLIVEKLLH 567
           L   +  E+L  
Sbjct: 172 LHDVVPRERLRD 183


>gi|291548714|emb|CBL24976.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Ruminococcus torques L2-14]
          Length = 168

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 15/141 (10%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS------VHTSQDSTGKNTL 445
           F I +  +D    + + ++I   +++   S  +  +            H S +       
Sbjct: 5   FDIESTGLDPVRDEILQLSIINENEEVLFSDYIRLVRHKTWNEAEKINHISPEMVKDKQT 64

Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLM-SYVLDSGRSS 502
            +     ++K F ++    I +N  +D   L   GI +      D M+  S+V       
Sbjct: 65  FESRKQEIQKIF-DQATELIAYNANFDISFLKAVGIVLPDVPISDPMIDFSFVYREYSEK 123

Query: 503 HDIAS-----IAQKWLSYTRK 518
           + I       +A ++  Y   
Sbjct: 124 YGIFKWQKLVVAARYYGYEFD 144


>gi|242008039|ref|XP_002424820.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212508370|gb|EEB12082.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 843

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 81/231 (35%), Gaps = 40/231 (17%)

Query: 453 LKKFFENEHFLKIGHNIKYDKL-VLHRYGISMRGFEDIMLMSYVL---DSGRSSHDIASI 508
           L +   ++  +K+ H+ + D   +  ++G+ +R   D      V+   + G+  H +  +
Sbjct: 445 LARLLTSDQVIKVIHDCRNDSSTIYFQFGVILRNVFDTKSAHAVIQMQEMGKPVHKVKDV 504

Query: 509 AQKWLSYTR-------KEILK---SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
           +   L           KE  K    +   I   +     +  +A  +   ++     L  
Sbjct: 505 SLNTLYEIYNLPTNPMKEYFKNIYKKDQKIWGRRPLSRDMIVYAAADVLSLVPHLYSLML 564

Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618
           K+I  +   + E L +  I V               +K +  ++ KN   +E  + DL  
Sbjct: 565 KIIKPEYKKLLEELCEEQIYV--------------HIKPIEVKLRKNQRKIETEVKDL-- 608

Query: 619 EKFNLSSPKQLGDI--------LFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
            K  L S +QL  I        L   +      K K       A+ LEQ+ 
Sbjct: 609 -KIKL-SNQQLKQIVLSNREIRLLRYIDLTEKEKEKLRGSYKVAKKLEQLE 657


>gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
 gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
          Length = 255

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 25/152 (16%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVETI-----------FIDL 431
           L  I    F   T  +   +   IA+  ++     +   +  +T               +
Sbjct: 57  LRDITFVVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPHRPI 116

Query: 432 SV------HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR- 484
            V          D          +L     F  +   L + H I +D   L +Y   +R 
Sbjct: 117 PVLAREITGIDDDMVFSQPTIYPVLDDFLDFI-DGAVL-VAHGIAFDVGFLDKYLRPLRT 174

Query: 485 ----GFEDIMLMSYVLDSGRSSHDIASIAQKW 512
                  D + +S VL+  R+ H + ++   +
Sbjct: 175 KLYHPVIDTITLSRVLEPFRAEHSLDALVADY 206


>gi|5758314|gb|AAD50779.1|AF162792_1 XPG [Drosophila melanogaster]
          Length = 1236

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 96/342 (28%), Gaps = 44/342 (12%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 863  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATDLTHGT--ITDDSDIWLFGGRTVYKNFF 917

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 918  AQNKHVMEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGR 975

Query: 215  ENILINASRIKQKKRRENILEYAE--------------TARLS--RKL------------ 246
            +    N   I  +   + ++++ +              +ARL+  +KL            
Sbjct: 976  D---ANGPGICNQSVLQTLIKFRDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSG 1032

Query: 247  --VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304
              V       I    +       +   +        F    ++           I    +
Sbjct: 1033 AVVEAYLAPTIDDNRDAFSWGTPDVESIRE-FTRKSFGWTTSKTDDILMPVMKKINEKKI 1091

Query: 305  DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364
              +            + +    K  Q +          + + P+K+   R  K +    +
Sbjct: 1092 QGSIRNYFTAKSALRVQQPHVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDD 1151

Query: 365  NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
            + +   +       +  ++     S        +      KP
Sbjct: 1152 DLAIADVATKAARPKRGKRKAAPESVVLDGELPSTSQSIPKP 1193


>gi|15892619|ref|NP_360333.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|15619787|gb|AAL03234.1| ribonuclease D [Rickettsia conorii str. Malish 7]
          Length = 281

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 75/212 (35%), Gaps = 27/212 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N K ++ +  +L      S     +    ++++      S +  K +    +    
Sbjct: 2   QIIDNQKTLEGFCNRLANKACLSIDTEFERRYTYYAQL-----SIIQVKAEEYCGI---- 52

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFE 487
                         + L+   L+   K   + +  KI H  + D  + +    ++     
Sbjct: 53  -------------IDALSNLDLNIFNKLLADNNITKIFHAPREDLEIFYNLFKTLPANVF 99

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + + +   G+       +  K +  T   I K+ + S  + +   S +  +A+ +  
Sbjct: 100 DIQIAANICGFGKQL-SYDDLCYKLIGIT---IDKTHQKSNWLKRPITSDMLNYAMLDVE 155

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            + +++  +   ++   L + Y+     ++DV
Sbjct: 156 YLYKIYKEVNNIIVRNNLTNKYQTTLSALLDV 187


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + GI        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGIEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|328791064|ref|XP_393585.4| PREDICTED: DNA repair protein complementing XP-G cells homolog [Apis
            mellifera]
          Length = 1094

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 113/330 (34%), Gaps = 48/330 (14%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--- 155
            +   Q FGIP +     EA+   A    I   +G     I+ D D+              
Sbjct: 736  QELLQLFGIPYLVAP-MEAEAQCAYLEQIHLTDGT----ITDDSDIWLFGGQCVYKNFFD 790

Query: 156  DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-- 213
            +  K  +     +   + +   +M+ L  L G   D   G+ GIG  TA  +L  + +  
Sbjct: 791  NNKKVLEFRACDIQHYFKLTRNEMIRLALLVG--SDYTTGLTGIGPVTALEILAAFPSEG 848

Query: 214  ---LENI------LINASRIKQKK--RRENILE-YAETARLSRKLVMLRTDVPITIPLEH 261
               L+ +      + N       K   R  +     +    S+ +V       +    E 
Sbjct: 849  DDLLQGLVNFCSWIENGKATGPGKTSLRTKLQNLEIQKGFPSQAVVQAYLSPMVDESKET 908

Query: 262  LILEDC---------------NGPR----LISFLKALEFTKLINRVATTYDCDAANIEPV 302
                                 +  +    ++  +K L   ++ N++   +     +  P 
Sbjct: 909  FSWGKPNFILLGNYVKLKFGWDKDKYNKIIVPVMKKLTEKEIQNKIDAYFKL---HTIPK 965

Query: 303  VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
             ++IN ++    A++     +T +  ++  SL  Q S   +++  ++L  E+    S  P
Sbjct: 966  PIEINLSQRVQKAVKKLNTDNTKLIENEVQSLKKQKSSNGNQKKRKELKNEQALTDSAKP 1025

Query: 363  INNDSYTKIVNTKDIQQWVQKLETIGSASF 392
                  T   N K++ +++ + E   + + 
Sbjct: 1026 KIFSVST--FNEKNVDEYIPQREHDKANAL 1053


>gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
          Length = 921

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKD-DTSFKVET-IFIDLSVHTSQDSTGKNT 444
                  + T  +D    + I IA   L+  +    F+        +     + +   + 
Sbjct: 4   QTYVVLDVETTGLDPARDRIIEIAAVRLEGGNITRQFQTLVNPGRPIPPAIERLTGISDA 63

Query: 445 LTK------EILSYLKKFFENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYV 495
           + +      E+L  L   F +   + +GHN  +D   L++   +G       D + +S +
Sbjct: 64  MVREAPPLPEVLPGLLDLFRDA--IPVGHNGTFDLAFLNQALGHGWH-SPLLDTLALSRI 120

Query: 496 LDSGRSSHDIASIAQKWLS 514
           L    +SH +  ++ K+L+
Sbjct: 121 LFPCLASHRLDYMS-KYLT 138


>gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016]
 gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112]
 gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
 gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           reuteri DSM 20016]
 gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112]
 gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
          Length = 1443

 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 68/185 (36%), Gaps = 23/185 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           ++L       F + T  + A + K   I +S +  +D    +    FID     S+ +T 
Sbjct: 419 EELAHQTYVIFDVETTGLSAIYDKV--IELSAVKMQDGNVLERFDEFIDPGFPLSEQTTN 476

Query: 442 KNTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVL------HRYGISMRG 485
             ++T          +E+    K F +    +  GHN+ +D   +      H+ G     
Sbjct: 477 LTSITTEMVQGSKTEEEVFQMFKDFCK--GCIIAGHNVSFDMGFMNTGYERHQMGKIAEP 534

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
             D + ++  L      + + ++++K+   L +  +    S  +   + K        + 
Sbjct: 535 VIDTLPLARFLYPDMRGYRLNTLSKKFKVALEHHHRANYDSEATGHLLYKFLKDAEARYD 594

Query: 543 IENSN 547
           ++  +
Sbjct: 595 VKYVD 599


>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
 gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
          Length = 1483

 Score = 42.3 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 90/301 (29%), Gaps = 43/301 (14%)

Query: 283 KLINRVATTYDCDAANIEPVVLD--INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340
           K   +       D   ++ V L      ++  G++  T+I            +++D  + 
Sbjct: 357 KKCEKFEENIRVDNEPVKRVELHCHTKMSDFDGVSSATDIINQAKNWGMDAIAITDHGNI 416

Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400
               +        ++    +  + +D    + N  D      K    G   F I T    
Sbjct: 417 QAFTEASHVKNPPKIIYGVEGYLVDDLKELVSNPAD------KTLDDGFIVFDIETTGFS 470

Query: 401 AFHSKPIAIAISTLDQKD----DTSFKVETIFIDLSV----HTSQDSTGKNTLTKEILSY 452
           A +     I    +   +     ++F      I   +    H S        + +EIL  
Sbjct: 471 AKNDAITEIGAVKVVNGEIVDRFSTFVNPKRPIPFRIEELTHISDAMVVNAPVIEEILPK 530

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-----FEDIMLMSYVLDSGRSSHDIAS 507
              F E+     + HN  +D   +      +         D + M+ +L    +   + +
Sbjct: 531 FLDFCEDYTI--VAHNAGFDTGFIRENAKRINAEYNPSIIDTVAMARLLLPDLNRFKLDT 588

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  K L+ + +                       A+ ++    ++W+    +L  + +  
Sbjct: 589 VC-KALNISLE-------------------GHHRAVNDAEATAEIWVEFIKRLKAKGINK 628

Query: 568 V 568
           +
Sbjct: 629 L 629


>gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104]
          Length = 1463

 Score = 42.3 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 225

 Score = 42.3 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFID 430
           +  K  +  +  +  +      I T  +D   S  I I A+   +      F+       
Sbjct: 40  LEEKRRKGKLTLVRPLSYVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEP 99

Query: 431 ----------LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY- 479
                     L+  T  D  G  T  +EIL  L+ F        +GHN+ +D   L+   
Sbjct: 100 YQSLSPFITNLTGITDSDLVGAPTF-REILPRLRDFLGGYTL--VGHNVNFDINFLYDRI 156

Query: 480 ----GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW 512
               G  +   + D   ++  +  G S + + ++ + +
Sbjct: 157 YRETGEHLNNPYLDTKKLAKTVVPGLSHYSLEALCKHF 194


>gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 1466

 Score = 42.3 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  +    + T   +L+  
Sbjct: 423 LHEATYVVFDVETTGLSAINNDLIQIAASKMYKGNIIEQFDEFINPGHPLSTFTTELTGI 482

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T     G   + K +L   + F +N   + + HN  +D   ++    R+ + +  +   D
Sbjct: 483 TDNHLIGAKPILK-VLEAFQDFCQN--TILVAHNASFDVGFMNANYERHQLPLINQPVID 539

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 540 TLEFARNLYPEYKRHGLGPLTKRF 563


>gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
 gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
          Length = 1468

 Score = 42.3 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S + + +         +    +     DL+  
Sbjct: 425 LHEATYVVFDVETTGLSAVNNSLIQIAASKMHKGNIIDQFDEFINPGHPLSQFTTDLTGI 484

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T         L + +L   ++F ++   + + HN  +D   ++    R+ + +  +   D
Sbjct: 485 TDNHLKDAKPLLQ-VLEEFQEFCQD--TVLVAHNATFDVGFMNANYERHDLPLISQPVID 541

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 542 TLEFARNLYPEYKRHGLGPLTKRF 565


>gi|226355452|ref|YP_002785192.1| DNA polymerase III subunit [Deinococcus deserti VCD115]
 gi|226317442|gb|ACO45438.1| putative DNA-directed DNA polymerase (DNA polymerase III, subunit)
           [Deinococcus deserti VCD115]
          Length = 204

 Score = 42.3 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 73/209 (34%), Gaps = 38/209 (18%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
           + W++        +    +  M+  H + I + ++ LD            ++  +     
Sbjct: 6   RSWLEA----SLVALDFESTGMNPAHDEVIQVGLAPLDAGAVDLGGAWAQWVRPTRPFRA 61

Query: 438 DSTGKNTLTKEILSYLKKF----FENEHFL----KIGHNIKYDKLVLHRYGISMRGFEDI 489
           D+   + L+ E+L           E    L     + H    +   L R+G+      D 
Sbjct: 62  DTVAIHGLSYELLQEAPAISTVRLELGARLQGRVLVAHYAALELGFLKRWGLRPAATLDT 121

Query: 490 MLMSYVLD------SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
           ++++  LD      + R ++ ++++A+++      E                      A+
Sbjct: 122 LMLALALDRQSTATARRDAYTLSALARRFGVEVYGE--------------------HDAL 161

Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            ++ +  Q++L+L  +L  +      + L
Sbjct: 162 ADALITAQVFLVLAHELETQGRADTLQDL 190


>gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 481

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 67/230 (29%), Gaps = 21/230 (9%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +     ++ ++ +L     A   I T        +   I I TL      S     I   
Sbjct: 4   VEVADRLRAFIAQL-GQPLACLDIETTGSHTERDRITEIGIVTLHPDGTQSNWSCLIHPG 62

Query: 431 LSVHT--------SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----KLVLHR 478
            ++          + +      +       L +  EN   + I HN ++D    K    R
Sbjct: 63  CAIPARITTLTGITNEMVADQPVFAHRAQALLERLEN--HIVIAHNARFDLGFLKQAFRR 120

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            GI         + +S  +      H++ S+ Q+           +R  ++    +    
Sbjct: 121 EGIRFNPSVLCSVKLSRQMFPAERRHNLDSVMQRMGLSC-----AARHRALGDAAVVADF 175

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587
           +   A   +  +L      R +  +   L      + P    V  M   G
Sbjct: 176 ITTLACTRAEELLAACRAQRQRPSLPPHLAPERIDEIPDTPGVYLMYGDG 225


>gi|171679661|ref|XP_001904777.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939456|emb|CAP64684.1| unnamed protein product [Podospora anserina S mat+]
          Length = 379

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 26/182 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   +  GIP I     EA+   A         G      S D D +   SP    + T
Sbjct: 141 CQKLLKLMGIPYIVAP-TEAEAQCAVLAR----AGKVYAAASEDMDTLCFDSPILLRHLT 195

Query: 158 VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
             E++   E + +   I   K++    +       +  IP +   TA  L++E+  LE +
Sbjct: 196 FSEQR--KEPIQE---IHVAKVLEGLGM-------LDPIPKVDPSTALKLIREHKTLEGV 243

Query: 218 LINASRIKQKKR---RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274
           +       + K     +   E A     +   V    D     PL     E  +   L+ 
Sbjct: 244 VKFMKEDPKSKYVIPEDWPFEDARDLFFNPD-VRQADD-----PLCDFKWEKPDIEGLVQ 297

Query: 275 FL 276
           FL
Sbjct: 298 FL 299


>gi|291403202|ref|XP_002717830.1| PREDICTED: exonuclease 3'-5' domain containing 1 [Oryctolagus
           cuniculus]
          Length = 558

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 202 LQMILEDKRILKVIHDCRWLSDCLSHQYGIMLNNVFDTQVA 242


>gi|262166840|ref|ZP_06034571.1| ribonuclease D [Vibrio cholerae RC27]
 gi|262024728|gb|EEY43402.1| ribonuclease D [Vibrio cholerae RC27]
          Length = 284

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 72/204 (35%), Gaps = 27/204 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I N K +++  ++L +    S     +    ++++      S +  K +    +    
Sbjct: 2   QMIDNQKTLEEVCKQLASKTCLSIDTEFERRYTYYAQL-----SIIQVKAENYCGI---- 52

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFE 487
                         + L+   L+   K   + +  KI H  + D  + +    ++     
Sbjct: 53  -------------IDALSNVDLNIFNKLLADNNITKIFHAPREDLEIFYNLFKTLPSNVF 99

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           DI + + +   G+       +  K        I K+ + S  + +   S +  +A+ +  
Sbjct: 100 DIQIAANICGFGKQL-SYDDLCYKLFGIA---IDKTHQKSNWLKRPITSDMLNYAMLDVE 155

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +++  L   +I   L++ Y+ 
Sbjct: 156 YLYKIYKELNNIIIRSNLVNKYQT 179


>gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J]
 gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J]
          Length = 1465

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHEATYVVFDVETTGLSAMNNDLIQIAASKMYKGNIIEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T     G   L + +L   + F  +   + + HN  +D   ++    R G+    +   D
Sbjct: 482 TDNHLIGAKPLLQ-VLEEFQAFCHD--TVLVAHNASFDIGFMNANYERNGLPQITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|262166092|ref|ZP_06033829.1| ribonuclease D [Vibrio mimicus VM223]
 gi|262025808|gb|EEY44476.1| ribonuclease D [Vibrio mimicus VM223]
          Length = 328

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
             +  ++   LK+ H    D  V    +G +     D  +M+  L  G S+   A++ Q 
Sbjct: 21  FVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLST-GFAALVQD 79

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
            L     E+ KS   +  + +    +  E+A  +   +L ++  L  +
Sbjct: 80  QLQV---ELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLER 124


>gi|194885564|ref|XP_001976457.1| GG20003 [Drosophila erecta]
 gi|190659644|gb|EDV56857.1| GG20003 [Drosophila erecta]
          Length = 824

 Score = 42.3 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 94/234 (40%), Gaps = 36/234 (15%)

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL---DSGRSSH----- 503
           LK   E++  +K+ H+ + D   +  ++GI +R   D      +L   +SG+  +     
Sbjct: 605 LKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYI 664

Query: 504 DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL-- 555
            + S+ +++      +    K+I +  +       ++   +  +A  +  V++   L   
Sbjct: 665 SLNSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMML-YAAGDVLVLIHDQLFGN 723

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEEN 612
           L  ++  E    ++   +     ++ Q++   ++I +   ++VS E   + + L    ++
Sbjct: 724 LARQIKPEN-RALFS--ELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLAQTSKS 779

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           I         + S +++   L   +      K +   +   A+ LE++    NP
Sbjct: 780 I---------VLSNREI--RLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNP 822


>gi|328354260|emb|CCA40657.1| exonuclease 1 [Pichia pastoris CBS 7435]
          Length = 567

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 30/196 (15%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146
            PEM       +    +A  I  +    +EAD  +         +G    IIS D DL+ 
Sbjct: 126 TPEMAKA----LIDEFKARQISFVVAP-YEADAQMVYLEMKGFVDG----IISEDSDLLV 176

Query: 147 LVSPTTCLYDTVKEEKI--------DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198
             S +       + E I        D  ++     +   +   + +L+G   D   GIPG
Sbjct: 177 FGSRSLITKLNDRGECIHVQRNNFKDCANIPGLAHLSQHQFRIVASLSG--CDYTKGIPG 234

Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS--RKLV--------M 248
           IG   A  L+++Y +++ I        + K   +       A L+   +LV        +
Sbjct: 235 IGVIKAFQLVRKYESIDKIFSALRLDGKFKIPASFETEYRLACLAFQFQLVFDPKLHKPV 294

Query: 249 LRTDVPITIPLEHLIL 264
             TD+P  +  E L L
Sbjct: 295 HLTDIPKDLH-EDLDL 309


>gi|227111497|ref|ZP_03825153.1| ribonuclease D [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 374

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I +   +QQ   +       +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITSDIGLQQVCTQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         +    +E   K  H    D  V    +G     
Sbjct: 62  DWAP----------------------FQALLRDEQVTKFLHAGSEDLEVFLNAFGTLPVP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           F D   L +++      S+  A++   ++  T   + KS   +  + +    +  ++A  
Sbjct: 100 FIDTQILAAFLGKP--LSYGFAALVADYMGVT---LDKSESRTDWLARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L + + L
Sbjct: 155 DVFYLLPMAIQL 166


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1390

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 11/139 (7%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFIDL---SVHTSQDST 440
           +        + T  ++    + + I A+ T D K    F        L   S++ +  + 
Sbjct: 379 DDYTYVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNKLNKKSLNITGITE 438

Query: 441 GKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLHRY----GISMR-GFEDIM-LMS 493
                  +I+  L K  E  +  + + HN  +D   L       GI     + D + L  
Sbjct: 439 DMLKDAPDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLSQ 498

Query: 494 YVLDSGRSSHDIASIAQKW 512
            +L +   S  +  +   +
Sbjct: 499 ALLRNKIKSFSLDKLVDHF 517


>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
 gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
          Length = 483

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 16/144 (11%)

Query: 383 KLETIGSASF-KIITDTMDAFHSKPIAIAI-----STLDQKDDTSFKVETIFIDLSVHTS 436
           ++    + +F  I T   +  H +   I I       +  +  T    ET         +
Sbjct: 6   QILGSATFAFLDIETTGGNPSHDRITEIGIRFWRAGAVVGEWQTLVNPETRISPFIESLT 65

Query: 437 Q---DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM-RGFED 488
               D      + ++I   L+K  ++   + + HN ++D         R G+        
Sbjct: 66  GITNDMVADAPVFEDIAEVLEKQLKD--TIFVAHNARFDYGFIKAEFRRLGLLFSAKVLC 123

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  L  G   H++ ++ ++ 
Sbjct: 124 TVKLSRKLYPGFRRHNMDALIERH 147


>gi|156093870|ref|XP_001612973.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148801847|gb|EDL43246.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
          Length = 428

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
            +  LK+  E+   +KI H+ + D  +L   Y I +    D  +   +L    +  D+  
Sbjct: 139 FVKCLKELLEDRRVIKITHDCREDCSILFNQYSICLNRTFDTQVAFNLLL-KETKKDLYQ 197

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           I+  +     K +L + K  I   K+     + +        L  + +     +   +  
Sbjct: 198 IS--YDDLLYKCLLLNNKHKIYFHKMISLDQKIYLKRPIAKELIQYAIQDVIYLKPLMWS 255

Query: 568 VYERL 572
           + +RL
Sbjct: 256 LVDRL 260


>gi|167841476|ref|ZP_02468160.1| hypothetical protein Bpse38_32680 [Burkholderia thailandensis
           MSMB43]
          Length = 315

 Score = 42.3 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 49/151 (32%), Gaps = 14/151 (9%)

Query: 68  PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF---EADDIIATY 124
               F       Y+  R             VR   +       + + +   EADD +   
Sbjct: 85  KGKRFHAATVKPYQGQRQGHKP---VNWRFVREYLELAPYKPWDRRLWRDREADDGMG-L 140

Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-IDIEHVIKKWG-IPPEKMVCL 182
                     V I + DKD+  L        D +     +    VI   G +   K   L
Sbjct: 141 ASNCMNPVRDVVIHTRDKDMRMLPGTHLTWTDYLLVHVPLGAYEVIGADGLVYGTKWFWL 200

Query: 183 QALTGDSIDNIPGI-----PGIGYKTAALLL 208
           Q L GDS D+IPG+        G  TAA LL
Sbjct: 201 QMLQGDSADHIPGLEKHEGKNCGEATAAELL 231


>gi|321452161|gb|EFX63616.1| hypothetical protein DAPPUDRAFT_119057 [Daphnia pulex]
          Length = 297

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 74/259 (28%), Gaps = 72/259 (27%)

Query: 6   HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65
            L ++D ++     F+              +AI  F ++L       +            
Sbjct: 3   TLIVIDTNAM----FHGFVHSMENK-----SAI--FSSIL-------KPGVDEIQLIFAM 44

Query: 66  DYPAVTFRNEIYP----DYKANRPKIPEM--------------LLPQLPLVRLATQAFGI 107
           D     +R+ +      +YKANR   P+               L+ +   +  A     +
Sbjct: 45  DSK-PYWRDVLLKREGINYKANRQAKPQSISLLEKVRKICENTLMEKRIPLMQAYTQKTV 103

Query: 108 PAIEIQ-GFEADDIIATYTY--IAEKEGFAVTIISTDKDLMQ------------------ 146
           P +    G+EADDI +              V   + D D +                   
Sbjct: 104 PGVRYSLGYEADDIASAIARYTKYNNLFDRVFFFTDDSDWLAFTELGHTWIGIASRQPRI 163

Query: 147 ---------LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
                    L       + T + +     HV K   I        ++  GD+ DN+ G  
Sbjct: 164 RTAEITMQWLKYEAFEFHKTKERKAYTALHVNKPTDIWK-----FKSYFGDNTDNLKGDK 218

Query: 198 GIGYKTAALLLQEYGNLEN 216
            +G       +  +  LE 
Sbjct: 219 SLGKVFFRPYIDLFEPLEG 237


>gi|295666185|ref|XP_002793643.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226277937|gb|EEH33503.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 270

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 1/102 (0%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
              +  +  + +     I++S   +                V          T       
Sbjct: 23  IDTLPTSPPSLYIDLEGISLSREGRISILQLFNHPKNHLYLVDIHVLGHEAFTTAAANGK 82

Query: 452 YLKKFFENEHFLKIGHNIKYDKLV-LHRYGISMRGFEDIMLM 492
            L+   E+    K+  +++ D       + I ++G EDI LM
Sbjct: 83  SLRTILESPDVPKVFFDVRNDSNAFFFHFDIRLQGVEDIQLM 124


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS----------FKVETIFIDLSV 433
            +     SF I T  +     + I      ++Q                K+     +L+ 
Sbjct: 420 FKDYSYVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGAFTTELTG 479

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRGFE-- 487
            T Q    +    K+ L  +      +  + I HN K+D   L        +        
Sbjct: 480 ITQQMLDSEGLSIKDGLQRIYDCL--DGKVAIAHNAKFDFNFLKEQFRLNNVPFPNVTVI 537

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK 511
           D ++ S +       H +  +  +
Sbjct: 538 DTLIASRIGFPNYKRHKLEDVTSR 561


>gi|125773943|ref|XP_001358230.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
 gi|54637966|gb|EAL27368.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
          Length = 905

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 75/221 (33%), Gaps = 27/221 (12%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P    L+R   L   P        + + + + Q +++L      +  +   +   F   
Sbjct: 255 EPSAEQLQRQTPLLPAPPAATELMLVDSVEKLNQALEELRRAPHIAIDVEHHSYRTF--- 311

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + I+ L Q                   ++D    +   +E +  L     +   +KI
Sbjct: 312 ---MGITCLVQMST---------------RTKDYIFDSLALREEMHVLNLVLTDPKKVKI 353

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D   L R   + +    D    +  L+  R      S+A     Y   ++ KS 
Sbjct: 354 LHGADQDIEWLQRDLSLYVVNMFDTHRAAKALNMARL-----SLAFLLKHYVDLDVDKSL 408

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           + +    +    Q+ ++A ++++ ++ ++  +   L+  + 
Sbjct: 409 QLADWRMRPLPQQLIDYARQDTHYLIYVYERMTNDLLQAEQ 449


>gi|261331708|emb|CBH14702.1| zinc finger protein, predicted [Trypanosoma brucei gambiense
           DAL972]
          Length = 390

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 33/285 (11%)

Query: 333 SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF 392
             S   +   S   P +         S   I    Y  +   + +++ V  L+   S + 
Sbjct: 20  PASGLGTDAKSCTAPTQPLSTSSATSSSSMILKYPYRVVDTHEKLKEAVTSLQGARSIAL 79

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            I               A  T DQ               +                 +  
Sbjct: 80  DIE--------------AFCTTDQAKQLGRISLVQACSDAKPVVFLFDVLTLTPDVFVKD 125

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIML----MSYVLDSGRSSHDIAS 507
           ++    +    K+  + + D   L  + G+   G  D+ +    + + L S      +  
Sbjct: 126 MQSLLSDREIRKLFFDCRRDVEALSCQLGVKPEGVLDLQVFFTAIQWKLRSVNRRSGMGY 185

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKIS-------DSQVQEHAIENSNVILQLWLLLRPK- 559
           + +     TR+E   + ++++ +                E+A  +   IL L   L    
Sbjct: 186 VLKSVAGLTRQEGDSAVQTAMTLGNRPVWDIRPLPDHFLEYAAGDVRHILLLSNYLVGNK 245

Query: 560 ------LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                 + VE+L   Y         V+++ + T  ++++  L++ 
Sbjct: 246 DVPVDVVAVERLTAQYVEHYAVGKPVITEADATPAEVNRAWLERY 290


>gi|134108762|ref|XP_777034.1| hypothetical protein CNBB5600 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259717|gb|EAL22387.1| hypothetical protein CNBB5600 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1089

 Score = 42.3 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 35/165 (21%)

Query: 74  NEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF 133
            E    Y       PEM       +  A +A  +  +    +EAD  +       E+EG+
Sbjct: 113 KEAKEAYTRCVDVTPEMAYQ----LIKALRAENVDYVVAP-YEADAQLCFL----EREGY 163

Query: 134 AVTIISTD------------KDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181
              II+ D            + + +L     C++        D   +++++  P      
Sbjct: 164 VDGIITEDSDLLVFGCKKASRVIFKLDKDGQCVWIHR-----DRLAMVREF--PMHGWTD 216

Query: 182 LQ-----ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA 221
           +       L+G   D +  IPGIG KTA  L++ + ++E +L + 
Sbjct: 217 VHFRRMAMLSG--CDYLDSIPGIGIKTAHRLMRRFNSVEKLLQHI 259


>gi|296416175|ref|XP_002837756.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633639|emb|CAZ81947.1| unnamed protein product [Tuber melanosporum]
          Length = 253

 Score = 42.3 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSS 502
           LK   E+    K   +++ D   L   Y IS+RG +DI +M+Y     R+ 
Sbjct: 84  LKTILESPSITKCLFDVRNDADALFNLYDISLRGVQDIQVMNYAAREVRNG 134


>gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 240

 Score = 42.3 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 70/235 (29%), Gaps = 53/235 (22%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I I    L     T   +             D+   + +T E L 
Sbjct: 6   FDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGITDEFLK 65

Query: 452 YLKKFFENE--------HFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSY-- 494
             + F E              I HN  +D       L R G   I      D + M+   
Sbjct: 66  DKQPFGEVAEQILTFFGDAKWIAHNATFDMGFINAELARIGLPPILPERVLDTLSMARRK 125

Query: 495 ------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPI--------- 530
                  LD+    + I +         +  + L+    E++  R++++ +         
Sbjct: 126 HPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQAALGLGMVGRSNQA 185

Query: 531 --------DKISDSQVQEH----AIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
                   D +  + V E     A   S++  Q    L  KL  + +   Y  LD
Sbjct: 186 ARGDMGMEDDVVIAAVLERPRPLAPRVSDIEEQAHEALVAKLGEKSVWAKYANLD 240


>gi|71745756|ref|XP_827508.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70831673|gb|EAN77178.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 390

 Score = 42.3 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 33/285 (11%)

Query: 333 SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF 392
             S   +   S   P +         S   I    Y  +   + +++ V  L+   S + 
Sbjct: 20  PASGLGTDAKSCTAPTQPLSTSSATSSSSMILKYPYRVVDTHEKLKEAVTSLQGARSIAL 79

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452
            I               A  T DQ               +                 +  
Sbjct: 80  DIE--------------AFCTTDQAKQLGRISLVQACSDAKPVVFLFDVLTLTPDVFVKD 125

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIML----MSYVLDSGRSSHDIAS 507
           ++    +    K+  + + D   L  + G+   G  D+ +    + + L S      +  
Sbjct: 126 MQSLLSDREIRKLFFDCRRDVEALSCQLGVKPEGVLDLQVFFTAIQWKLRSVNRRSGMGY 185

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKIS-------DSQVQEHAIENSNVILQLWLLLRPK- 559
           + +     TR+E   + ++++ +                E+A  +   IL L   L    
Sbjct: 186 VLKSVAGLTRQEGDSAVQTAMTLGNRPVWDIRPLPDHFLEYAAGDVRHILLLSNYLVGNK 245

Query: 560 ------LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                 + VE+L   Y         V+++ + T  ++++  L++ 
Sbjct: 246 DVPVDVVAVERLTAQYVEHYAVGKPVITEADATPAEVNRAWLERY 290


>gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
 gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
          Length = 1464

 Score = 42.3 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS---------TLDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I +A S           D+  D    +      L+  
Sbjct: 421 LNEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIEEFDEFIDPGHPLSAFTTQLTGI 480

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T++   G   L + +L   + F E    + + HN  +D   ++    R+G+    +   D
Sbjct: 481 TNEHVRGAKPLVQ-VLKEFQAFCE--GTVLVAHNATFDVGFMNANYERHGLPKITQPVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 538 TLEFARNLYPDFKRHGLGPLTKRF 561


>gi|220913226|ref|YP_002488535.1| DNA polymerase III subunit epsilon [Arthrobacter chlorophenolicus
           A6]
 gi|219860104|gb|ACL40446.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
           chlorophenolicus A6]
          Length = 236

 Score = 42.3 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 19/111 (17%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKD----------DTSFKVETIFIDL----SVHT 435
           A+F + T   ++  ++ +  +++ +D +           D   ++ T   D+    +   
Sbjct: 10  AAFDLETTGRNSRAARIVTASVTVVDHRGEVIREHEWLADPGVEIPTEASDVHGVTTEQA 69

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS 482
            +D    + +T+E+ + L++ F +     I  N  YD  VL     RYG+ 
Sbjct: 70  RKDGRPAHEVTRELAAVLQELF-DTGVPVIAFNASYDFTVLAAESARYGVP 119


>gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 849

 Score = 42.3 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 110/316 (34%), Gaps = 37/316 (11%)

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           S +   + + +R        I+          +      ++ E      F + +  +D  
Sbjct: 449 SPELFNQTYRQRYVSYGMRMIDLFQEAAYEYEEPYGLLKKQFEKGRIVIFDVESTGLDVT 508

Query: 403 HSKPIAI-AISTLDQKDDTSFK------VETIFIDLSVHTSQDSTGK-NTLTKEILSYLK 454
             + I I AI  ++ +   SF+             L    S D   +     +E+    +
Sbjct: 509 QDEVIQIAAIELVNGEYTRSFERFIKPSHSVGDSALVHGFSDDYLNEHGEEAREVFLQFQ 568

Query: 455 KFFENEHFLKIGHNIKYDKLV----LHRYGISMR---GFEDIMLMSYVLDSGRSSHDIAS 507
            F E    L IGHN++YD  +    ++R G+      G+ D + +   L     +H + +
Sbjct: 569 AFVE--GALLIGHNVQYDLKIVSSQMNRLGLMFENSMGYYDTLDIVRRLYPDLKNHKLDT 626

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL------- 560
           ++  ++  + +            + + D    +  +  S  +L      R K+       
Sbjct: 627 VSA-YVGVSHEP---------THNAMDDILATKDVLVKSMDLLMTHHENRKKVMKFYEPH 676

Query: 561 ---IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
               +++L  + +  +     V  +  I   + + +  KQ   E+   + +    ++  +
Sbjct: 677 LWGAIQRLKEIQDCFETQPPHVAMKGLIDAFECEDEAHKQSIIELLNYIEATYHRLHHTN 736

Query: 618 GEKFNLSSPKQLGDIL 633
             + NL    Q+ +++
Sbjct: 737 PHQPNLEIWIQMLNLM 752


>gi|295095587|emb|CBK84677.1| ribonuclease D [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 384

 Score = 42.3 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 64/225 (28%), Gaps = 30/225 (13%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             +    ++ +Y  I    ++    +      + +          ++ +   I +     
Sbjct: 1   MGANKRESDLNYQMITTNDELASLCEVTREFPAIALDTEFVRTRTYYPQLGLIQMYDGKH 60

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                    T +  +                      ++   +    K  H    D  V 
Sbjct: 61  VSLIDPLGITDWAPM----------------------RELLLDTAVTKYLHAGSEDLEVF 98

Query: 477 HR-YGISMRGFEDIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
              +GI  +   D  +++    SGR  S   A++ +++   T   + KS   +  + +  
Sbjct: 99  LNTFGIMPQPLIDTQILA--AFSGRPLSWGFAAMVEEYTGLT---LDKSESRTDWLARPL 153

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMID 578
            ++  E+A  +   +L +   L  +      L    +        
Sbjct: 154 TARQLEYAAADVFYLLPIAGQLMKEAEASGWLSAALDECRMTQQR 198


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score = 42.3 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 38/223 (17%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + +D    I N KD     + +E      F I T   D F+ K I I    +  ++ 
Sbjct: 93  EAYVVDDEQDLITNPKD-----KMIEDEIYVVFDIETTGFDPFNDKIIEIGAVKMRGREI 147

Query: 420 TSFKVETIFI--DLSVHTSQDSTGKNTL---TKEILSYLKKFFE-NEHFLKIGHNIKYDK 473
                E +     +    ++ +T  + +    ++I + L +F E       + HN K+D 
Sbjct: 148 IGEFSEFVNPEIPIPPKITELTTITDEMVANAEKIETVLPRFLEFCTDTTVVAHNAKFDV 207

Query: 474 LVLHRYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527
             + +  I  +G E      D + ++  L      + +A++  K+   T +         
Sbjct: 208 GFIKQKTIE-QGLEYSPSVIDTLPLARTLLPDSRGYGLANLV-KYFGITLE--------- 256

Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
                         A++++    +++      ++ + +L + E
Sbjct: 257 ----------THHRAVDDAKATAEVFQKFLNMILSKGILKLIE 289


>gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
 gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
          Length = 1464

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS---------TLDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I +A S           D+  D    +      L+  
Sbjct: 421 LNEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIEEFDEFIDPGHPLSAFTTQLTGI 480

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T++   G   L + +L   + F E    + + HN  +D   ++    R+G+    +   D
Sbjct: 481 TNEHVRGAKPLVQ-VLKEFQAFCE--GTVLVAHNATFDVGFMNANYERHGLPKITQPVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 538 TLEFARNLYPDFKRHGLGPLTKRF 561


>gi|302838749|ref|XP_002950932.1| hypothetical protein VOLCADRAFT_91413 [Volvox carteri f.
           nagariensis]
 gi|300263627|gb|EFJ47826.1| hypothetical protein VOLCADRAFT_91413 [Volvox carteri f.
           nagariensis]
          Length = 254

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLM 492
           + ++ LK+  E+   +K  ++++ D   L   YG+ +RG  D+ L 
Sbjct: 76  DGVTSLKRLLEDPVVIKYLYDVRRDAEALSSEYGVRLRGVVDLQLA 121


>gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
 gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
          Length = 1464

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS---------TLDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I +A S           D+  D    +      L+  
Sbjct: 421 LNEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIEEFDEFIDPGHPLSAFTTQLTGI 480

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFED 488
           T++   G   L + +L   + F E    + + HN  +D   ++    R+G+    +   D
Sbjct: 481 TNEHVRGAKPLVQ-VLKEFQAFCE--GTVLVAHNATFDVGFMNANYERHGLPKITQPVID 537

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 538 TLEFARNLYPDFKRHGLGPLTKRF 561


>gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 149

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 392 FKIITDTMDAFHSKPIAIA-IST-LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449
                   D   S    +A  +  L+     SF+  T  I +S            L  ++
Sbjct: 2   VDTEAALAD-LASHLDGVAEFAVDLEHHSYRSFRGFTCVIQVSTRERDFVVDALALRSKM 60

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLD 497
            ++L + FE+    K+ H    D   L R +GI +    D    + VL+
Sbjct: 61  RAHLARHFEDATKQKVMHGADMDVQWLQRDFGIYVVNMFDTGQAARVLE 109


>gi|322801849|gb|EFZ22421.1| hypothetical protein SINV_07950 [Solenopsis invicta]
          Length = 612

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 452 YLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
            LK+    +H LK+G +   D + ++  YG  + G  D+  ++  L+   S   +A++ +
Sbjct: 139 KLKELLATKHILKVGVSSFEDGQKLVKDYGCRVNGTLDLRTLADSLN-LPSRKSLAAMCE 197

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           ++L+    ++++ R        +SD QV  +A  ++   + ++  +  K
Sbjct: 198 QYLNIEMDKLIEVRCGDWDASTLSDDQVA-YAACDALASVIIYHKIMEK 245


>gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735]
 gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735]
          Length = 906

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 22/153 (14%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
           ++VQ  E      F   T  +D FH   + IA   +           ++ ++ S H   +
Sbjct: 497 KFVQCYENETITIFDTETTGLDVFHDDILQIAAVKVRNGAVVPGSALSLHLE-SDHEIPE 555

Query: 439 STG----------KNTLTKEILSYLKKFFENEH-FLKIGHNIKYDKLVLHR--------- 478
             G          +N         L++F +     + +GHN  YD  +L           
Sbjct: 556 MLGDIVNPIIEERRNQTLLPRREALQRFVDYARGTVLLGHNADYDIHILANNLQREMPET 615

Query: 479 -YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
                +  + D + +  +L  G   + +  + +
Sbjct: 616 ALPNELSDYFDSLHLIRLLRPGLRQYKLKYLLE 648


>gi|148696007|gb|EDL27954.1| Vexonuclease 3'-5' domain-like 1 [Mus musculus]
 gi|187957716|gb|AAI50663.1| Exonuclease 3'-5' domain-like 1 [Mus musculus]
 gi|219519197|gb|AAI44751.1| Exdl1 protein [Mus musculus]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 201 LQMILEDKRILKVIHDCRWLSDCLSHQYGIMLNNVFDTQVA 241


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 17/164 (10%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKD 418
           +  I  D +  I N  D               F I T  +     K   I A+  +D K 
Sbjct: 379 EAKILEDDFRIITNPYDSMNL------REFVVFDIETTGLSNATEKITEIGAVKIVDNKI 432

Query: 419 DTSFKVETIFI-DLSVHTSQDSTGKNTLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDK 473
              F         +    ++ ++  N + K+   I + L +F +       I HN  +D 
Sbjct: 433 VDEFNQLINPEIPIPEKITELTSITNEMVKDMPKIDAVLPEFLKFVGDCTLIAHNADFDM 492

Query: 474 LVLHRYGISM-----RGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
             + +  I +     R + D +  +  L+    +H + ++ +K+
Sbjct: 493 GFIKKNCIDLGINPVRTYIDTLAFARALEPHLKNHKLDTLTKKY 536


>gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 881

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 71/198 (35%), Gaps = 31/198 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +     + + ++ L+     +  +   +  +F+     + IS+                 
Sbjct: 247 VDKEDILDEMIESLKQCSEVAIDLEHHSYRSFNGITCLMQISS----------------- 289

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                ++D         + L  L     +++ +K+ H    D   L R +GI +    D 
Sbjct: 290 ----RTKDYIVDVFSVWKSLHKLNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLFDT 345

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI--SDSQVQEHAIENSN 547
              +  L        + S A  +L  +  ++   +K  +   +I     ++  +A  +++
Sbjct: 346 GQAARTL-------SMPSYALAYLLQSISKVPTDKKYQLADWRIRPLPREMISYARSDTH 398

Query: 548 VILQLWLLLRPKLIVEKL 565
            +L ++  LR +L+ + L
Sbjct: 399 YLLSIYDNLRIQLVSKAL 416


>gi|27370298|ref|NP_766445.1| exonuclease 3'-5' domain-containing protein 1 [Mus musculus]
 gi|81914299|sp|Q8CDF7|EXD1_MOUSE RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
           AltName: Full=Exonuclease 3'-5' domain-like-containing
           protein 1
 gi|26326111|dbj|BAC26799.1| unnamed protein product [Mus musculus]
 gi|111598629|gb|AAH92241.1| Exonuclease 3'-5' domain-like 1 [Mus musculus]
 gi|123232373|emb|CAM22019.1| Vexonuclease 3'-5' domain-like 1 [Mus musculus]
 gi|123858356|emb|CAM18069.1| Vexonuclease 3'-5' domain-like 1 [Mus musculus]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 201 LQMILEDKRILKVIHDCRWLSDCLSHQYGIMLNNVFDTQVA 241


>gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
 gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
          Length = 1442

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSVH 434
           L+      F + T  + A + K I ++ S +   +         D  F +     +L+  
Sbjct: 420 LDGQTYVIFDVETTGLSAIYDKVIELSASKMKDGEVLERFDEFIDPGFPLSEQTTNLTSI 479

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFED 488
           T +   G  +  +E+    + F E    +  GHN+ +D   +     R+ +        D
Sbjct: 480 TDEMVQGSKS-EEEVFRMFRDFCE--GCIIAGHNVSFDMGFMNTGYRRHNMEEITAPVID 536

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L      + + ++++K+
Sbjct: 537 TLPLARFLYPHMRGYRLNTLSKKF 560


>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 876

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 87/269 (32%), Gaps = 37/269 (13%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-------TLDQKDDTSFKVETI 427
           +     +   E      F + +  +D    + I IA          +D+ +      + +
Sbjct: 496 EKFSLLINAFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKPV 555

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL------HRYG 480
                VH   D      + ++    LK+F E ++  + +GHN++YD  +L      +  G
Sbjct: 556 KDSYYVHGFSDEM-LQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLG 614

Query: 481 I-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
               + F D + +      G  ++ + ++++ + +          K     D + D    
Sbjct: 615 KPKFKTFYDTLDIYRRFYPGNINYKLENLSKVYDT----------KHKPSHDAMDDIIAT 664

Query: 540 EHAIENS------NVILQLWLLLRPKLIV-----EKLLHVYERLDKPMIDVVSQMEITGI 588
              +  +         ++   L+   L       +KL  +++  +      +    + G 
Sbjct: 665 GELLVRAINEKIRETSMERMALMSKHLKAFTAISKKLNELFQIAESKRPYELVACVMNGF 724

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            I        + E    L  L     DL 
Sbjct: 725 NIKSMYAGDENKEKLNRLRDLYALFRDLD 753


>gi|167463853|ref|ZP_02328942.1| hypothetical protein Plarl_15049 [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 30

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)

Query: 1  MQKENH---LFLVDGSSFIYRAFYA 22
          MQ++N    L LVDG + ++RA+YA
Sbjct: 1  MQEQNKQDSLLLVDGMALLFRAYYA 25


>gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 375

 Score = 42.3 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 58/194 (29%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF---IDLSVHTSQDST 440
                     + T        +   I +  +     +++         I   +      +
Sbjct: 10  ACEHPLVFVDLETTGGSTAEHRITEIGVVEIGPLGVSTWTTLVNPGQSIPPFIQQLTGIS 69

Query: 441 GKNTLTKEILSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
                     + L    FE  +  L + HN  +D+  L     R GI+        + +S
Sbjct: 70  DDMVRDAPSFASLAPTLFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLS 129

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    + H + ++ ++                +P         +  A+ +++++ Q W
Sbjct: 130 RALFPREARHGLDALIERH-------------GLVP-------AARHRALADADLLWQFW 169

Query: 554 LLLRPKLIVEKLLH 567
             L   + +E+L  
Sbjct: 170 RQLHEIVPLERLRD 183


>gi|332099004|gb|EGJ03948.1| hypothetical protein SD15574_5496 [Shigella dysenteriae 155-74]
          Length = 65

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 20/78 (25%)

Query: 6  HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAG--FCNMLWKLLQNSRKESIASHFAV 63
          HL +VD  + I R                  A+ G          L      S  +H   
Sbjct: 4  HLLIVDALNLIRRIH----------------AVQGSPCVETCQHALDQLIMHSQPTHAVA 47

Query: 64 IFDYPAVT--FRNEIYPD 79
          +FD    +  +R++  PD
Sbjct: 48 VFDDENRSSGWRHQRLPD 65


>gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium
           cf. saccharolyticum K10]
          Length = 1037

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 73/220 (33%), Gaps = 37/220 (16%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----DTSFKVETIFIDLSVHTSQDSTG 441
                 F I T       ++ I I    ++        ++F    + I   +      + 
Sbjct: 194 DHTCVVFDIETTGFSPLKNRIIEIGAVKVENGKIVDRFSTFVNPEVPIPFEIEKLTSISD 253

Query: 442 KNTL-TKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLHRYGISMRG------FEDIMLMS 493
              L   +I   L KF E     + + HN  +D   + R+   ++G        D + M+
Sbjct: 254 NMVLGAPKIEEVLPKFLEFCSDAVMVAHNASFDMSFI-RHNAMIQGKSFEPTVLDTVSMA 312

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    +   + ++A++                    +IS       A++++    +++
Sbjct: 313 RFLLPNLNRFKLDTVAKEL-------------------RISLEN-HHRAVDDAGATAEIF 352

Query: 554 LLLRPKLI---VEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +     L    +E L  + E+     ++ + +M    I I
Sbjct: 353 VKFVEMLKSRGIENLDELNEQSRM-SVETIRKMPTNHIII 391


>gi|257484568|ref|ZP_05638609.1| excinuclease ABC subunit C [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 166

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   KA   K+P++L       Q+ + R       +P + + G               K 
Sbjct: 8   YSRIKAGEGKLPDVLLVDGGKGQMSMARDVLNELQVPDLILLGVAKGTT--------RKA 59

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   +  L+    ++  D  H   ++ I   +    +        
Sbjct: 60  GFETLYLNDAAHEFTLPGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTS 111

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            + G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 112 TLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAESI 159


>gi|228907508|ref|ZP_04071365.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228852000|gb|EEM96797.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 134

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           Y Q ELR LA + +   L + F+  LD+H  +  +I G
Sbjct: 6   YIQQELRWLAIVTQEPVLIEAFKKGLDVHSQITCQIKG 43


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + GI        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGIEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
 gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 1 str. ATCC 27813]
          Length = 1442

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV-------- 433
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINENITNL 461

Query: 434 -HTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGIS-MRGFE- 487
            + SQ+        K  L  +K+ F+N        I  +I +    L ++G+  ++    
Sbjct: 462 TNISQEMVNNAIDEKTALLKIKEIFDNHILVAHNGINFDINFINQRLLKWGLEPLKNPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++S  ++  +S H + +I +K+      E+ 
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDEVA 554


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 1433

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + GI        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGIEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
          Length = 1421

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 17/164 (10%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKD 418
           +  I  D +  I N  D               F I T  +     K   I A+  +D K 
Sbjct: 379 EAKILEDDFRIITNPYDSMNL------REFVVFDIETTGLSNATEKITEIGAVKIVDNKI 432

Query: 419 DTSFKVETIFI-DLSVHTSQDSTGKNTLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDK 473
              F         +    ++ ++  N + K+   I + L +F +       I HN  +D 
Sbjct: 433 VDEFNQLINPEIPIPEKITELTSITNEMVKDMPKIDAVLPEFLKFVGDCTLIAHNADFDM 492

Query: 474 LVLHRYGISM-----RGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
             + +  I +     R + D +  +  L+    +H + ++ +K+
Sbjct: 493 GFIKKNCIDLGINPVRTYIDTLAFARALEPHLKNHKLDTLTKKY 536


>gi|228969099|ref|ZP_04130013.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228790588|gb|EEM38275.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 134

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           Y Q ELR LA + +   L + F+  LD+H  +  +I G
Sbjct: 6   YIQQELRWLAIVTQEPVLIEAFKKGLDVHSQITCQIKG 43


>gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
           DSM 5476]
 gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
           DSM 5476]
          Length = 1453

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 62/201 (30%), Gaps = 27/201 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDSTGKN 443
                 F   T  ++A   +   I    L   +  +   +       +    ++ +   +
Sbjct: 431 EGEFVVFDTETTGLNAQTERLTEIGAVVLKNGEITEEYDEFVNPEKPIPPKITELTGITD 490

Query: 444 TLTKEI---LSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMR-GFEDIMLMSY 494
           ++  +       L++FF   +  + I HN  +D   L     R+G+S    + D + +  
Sbjct: 491 SMVADAPTEKEALERFFAFAKGRILIAHNANFDMGFLAAAAARHGLSCDFTYIDTLPIVR 550

Query: 495 VLDSGRSSHDIASIAQKW----------------LSYTRKEILKSRKSSIPIDKISDSQV 538
            L     +H + ++ +                  L     E+ K       +  I+D   
Sbjct: 551 TLFPTLRNHKLDTVVKHLKLGDFNHHRACDDAKILGLVFAEVAKRLIQEKGVADIADINN 610

Query: 539 QEHAIENSNVILQLWLLLRPK 559
                ++   +     ++  K
Sbjct: 611 CLGGAKDYKKLRTYHQIILVK 631


>gi|39939161|ref|NP_950927.1| DNA polymerase I [Onion yellows phytoplasma OY-M]
 gi|39722270|dbj|BAD04760.1| DNA polymerase I [Onion yellows phytoplasma OY-M]
          Length = 480

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 67/162 (41%), Gaps = 12/162 (7%)

Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
           + ++ +F KI  + +  +L L      + G   D++  SY+L   ++  + + I  K   
Sbjct: 54  YLKDANFYKIVFHNQATQLFLKTKHQELNGVIFDLVCASYLLFPLKNL-EFSHIIAKIDI 112

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
                 +     +I I       +++     + ++  +   +   L  +  L +++ ++ 
Sbjct: 113 LNNTNYVSQLSQNIFI-------LEQKVAFKAFLLHAIKNSVLHHLKAQNQLFLFQEIEL 165

Query: 575 PMIDVVSQMEITGIQIDQDLL---KQVSAEISKNLLSLEENI 613
           P+ ++++Q+E     + Q  +   + +     + + + +E I
Sbjct: 166 PLSNILAQLEYETNLVKQKQIIEAQPIEKNTDEKIETQQEKI 207


>gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
 gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
          Length = 225

 Score = 42.3 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 63/219 (28%), Gaps = 47/219 (21%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET----IFIDLSVHTSQ------- 437
           +  F   T  ++      +    +     D  + KV         D+    S+       
Sbjct: 4   AVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPERDIPAEASRVHGMTSA 63

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYG---ISMRGFEDIM 490
           D  GK    +     L+ F E+     + HN  +D   L     R G   +      D +
Sbjct: 64  DVAGKPKFAEIAAELLEFFAEDP---LVAHNAPFDFGFLDAEFARIGRAALDRARMIDTL 120

Query: 491 LMSY--------VLDSGRSSHDIASIAQ---------KWLSYTRKEILKSRKSSIPIDKI 533
            ++          LD+     DI   A+         K L+    E+   R+  + +   
Sbjct: 121 ALAKQRFPGMPNSLDALCRRFDIDFSARTTHNALLDCKLLAEVYVELTGGRQRGLDLAAE 180

Query: 534 SDSQVQEHAIE---------NSNVILQLWLLLRPKLIVE 563
           S  ++ E+  E          S   L        KL   
Sbjct: 181 STIRLVEYRSEGPRTPRPVVASAAELAAHEAFIEKLKEP 219


>gi|183232094|ref|XP_651701.2| DNA-repair protein [Entamoeba histolytica HM-1:IMSS]
 gi|169802201|gb|EAL46315.2| DNA-repair protein, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 660

 Score = 42.3 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 9/121 (7%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           +    +   IP I   G EA+       Y  E +G    I + D D+    +        
Sbjct: 473 LIQMFKEINIPYIIAPG-EAE----AQCYQLEHDGLCDYIATNDSDIFVYGAKNVITNLF 527

Query: 158 VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217
                I        +    +++     L     D   G P +G  TA  ++    ++ + 
Sbjct: 528 TSSHPILYSASTFDY--SLDQIRLYSLLVP--SDYSNGFPNVGPITAKHIITSCHSINDF 583

Query: 218 L 218
           L
Sbjct: 584 L 584


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 415 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 474

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + GI        D 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGIEKTKNPVIDT 532

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 533 LELARFLFPEMKNHRLNTMCKK 554


>gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia]
          Length = 733

 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL 496
           D        +++++  K+ FE++  +K+ +    D L L R + I+++ F DI  ++   
Sbjct: 91  DVIEIGVDNQKLINVFKQIFEDDKIIKVFYAGSTDVLWLKRDFQITIQNFFDIKEVA--- 147

Query: 497 DSGRSSH-DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE-HAIENSNVILQLWL 554
           D  + S   +  + +++  +   +  K+   +    +   +Q Q  +A  +   +  L  
Sbjct: 148 DECKLSKISLIFLWKQYCDHQVSKSYKTNMQTSDWAERPLTQEQLIYAAYDCYYLPYLRY 207

Query: 555 LLRPKL 560
           +L  +L
Sbjct: 208 VLLEEL 213


>gi|157963247|ref|YP_001503281.1| 3'-5' exonuclease [Shewanella pealeana ATCC 700345]
 gi|157848247|gb|ABV88746.1| 3'-5' exonuclease [Shewanella pealeana ATCC 700345]
          Length = 292

 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 82/240 (34%), Gaps = 39/240 (16%)

Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408
              +E  Q +S           +V    +   V  +E      F   T            
Sbjct: 74  DFNVELTQNVSAKLNGQIRQVIVVTPDSLTAAVADIEAQTCIGFDTETA----------- 122

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
              +T ++       +  I I    H+         +    ++ L      +  LK+G  
Sbjct: 123 ---ATFEKGRRNPNPISLIQIATPTHSYLFRMQGENIVP-FMAALAPILSGDKLLKVGIG 178

Query: 469 IKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIAS--IAQKWLSYTRKEILKSRK 525
           ++ D   + R + IS+    D   ++++++   +   + +  +A   L+     + KS+K
Sbjct: 179 LRSDLNAMKRDFEISVNSMLD---LNWLMNQLGAPKQLGTQQMAATVLALK---LPKSKK 232

Query: 526 SSI-----PIDKISDSQVQEHAIENSNVI----------LQLWLLLRPKLIVEKLLHVYE 570
            ++     P+ +       ++A  ++ V           L+ +  L P  + ++L  ++E
Sbjct: 233 VTLSNWAKPLAEPLSELQLQYAAADAFVALDILYGLLEQLRPYRALWPLPLQQRLTDLFE 292


>gi|221117975|ref|XP_002165683.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 608

 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 83/214 (38%), Gaps = 30/214 (14%)

Query: 399 MDAFHSKP--IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           ++ F      + +    +  +      V  I + L          + ++ +E    LKK 
Sbjct: 103 LECFQENLHFVGLDCEWVSNEKS---HVALIQLSLGTTCLIYRIPQLSINEEFPFQLKKL 159

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDS--------GRSSH---DI 505
            EN   LK G  I  D   LH +G+++RGF D+ +++               + +    +
Sbjct: 160 LENPKILKFGVAIYEDVRRLHSHGVAVRGFVDLRILAQRCLPFITTKNSEDENKYKGMGL 219

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--------- 556
            S++ K L+    +    + S+     +S  Q+  +A +++   L+++  L         
Sbjct: 220 QSLSYKLLNMNLDKSRNIQCSNWHATDLSKEQIL-YAAKDAIASLEVFYALGDVYNYCHN 278

Query: 557 RPKLIVEKLLHVYERLDKPMIDVV--SQMEITGI 588
           + KLI E   +    L +P + +V  +     GI
Sbjct: 279 KDKLINE--FNTQYNLTQPSVFLVEMACSMCQGI 310


>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
           prausnitzii L2-6]
          Length = 1417

 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 34/196 (17%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSVHTSQDSTGKN 443
                 F   T  +D        I A+   + +    F         ++   ++ +   N
Sbjct: 394 NGEFCVFDTETTGLDPGVEYLTEIGAVIVRNGEVVEEFDTFVKPGKPITSKITELTGITN 453

Query: 444 TLTKEI---LSYLKKFFE--NEHFLKIGHNIK-YDKLVLH----RYGISMRG-FEDIMLM 492
            +  +       LK F +  +   L +GHN   +D   L     R GI     + D + M
Sbjct: 454 EMVADAPSEAEALKAFLDFVDGRIL-VGHNAHSFDIRFLRAAAKRSGIEFEPTYIDTLTM 512

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           +  +  G  ++   +I  K L     E                      A E+S  + ++
Sbjct: 513 AQAMYPGLHNYKQGTI-NKHLELPAYE-------------------AHRACEDSAALGRI 552

Query: 553 WLLLRPKLIVEKLLHV 568
           + ++   L  +++  V
Sbjct: 553 FCVMLKDLEEKQVTAV 568


>gi|260592844|ref|ZP_05858302.1| 3'-5' exonuclease domain protein [Prevotella veroralis F0319]
 gi|260535214|gb|EEX17831.1| 3'-5' exonuclease domain protein [Prevotella veroralis F0319]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 28/190 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTM-DAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           I+N  + ++ V  L +         T  +    H + +A+ +   D +    F++  I  
Sbjct: 29  ILNETEAEKAVDYLLSRDIIGVDTETRPVFKKGHRRKVAL-LQACDHEVCFLFRLNYIGF 87

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
                                  +K+F E+    K+G ++  D L+LH R       F D
Sbjct: 88  P--------------------DCIKRFLEDTTVPKVGLSLSDDMLMLHQRANFKPGYFID 127

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L  YV        D+ S+ + + +   + I K ++ S   +++ + + + +A  ++  
Sbjct: 128 --LQDYV--KSLGIEDM-SLQKLYANVFHERITKRQQLSNWENEVLNDKQKLYASTDAWT 182

Query: 549 ILQLWLLLRP 558
            ++L+  L  
Sbjct: 183 CIKLYERLHE 192


>gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 375

 Score = 42.0 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF---IDLSVHTSQDST 440
                     + T    +   +   I +  +     +++         I   +      +
Sbjct: 10  ACEQPLVFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTTLVNPGQSIPPFIQQLTGIS 69

Query: 441 GKNTLTKEILSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
            +        + L    FE  +  L + HN  +D+  L     R GI+        + +S
Sbjct: 70  DEMVRDAPSFASLAPTLFERLDGKLFVAHNASFDRGFLRAEFDRAGIAFNPDVLCTVRLS 129

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    + H + ++ ++                +P         +  A+ +++++ Q W
Sbjct: 130 RALFPREARHGLDALIERH-------------GLVP-------AARHRALADADLLWQFW 169

Query: 554 LLLRPKLIVEKLLH 567
             L   + +E+L  
Sbjct: 170 RQLHEIVPLERLRD 183


>gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53]
 gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 1451

 Score = 42.0 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 76/214 (35%), Gaps = 35/214 (16%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLS 432
           Q L T     F I T ++ A+H + I  A + ++ K           +  K+      L+
Sbjct: 404 QDLITGRYVVFDIETTSLSAYHGEIIEFAATIIENKAVVDKVDIFIKSKEKLSHFTTRLT 463

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-----HRYGISMRGFE 487
             T++    K    KE L  +     N   + + HN  +D   L          + +   
Sbjct: 464 SITNEMLDQKGIELKEALQKIYDVLNNN--VAVAHNANFDYNFLIEKFDQNNMQAPKCTF 521

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D +++S +L   R  H++     + LS                    D++    A+ ++
Sbjct: 522 IDSLVVSRILFEHRDKHNLNEFC-RNLSVNY-----------------DTEKAHRALYDT 563

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
            V+   W+    KL   K +  ++ L +   D +
Sbjct: 564 EVLADAWIEATLKLKDIKQISNFQELSEYKSDAL 597


>gi|302525782|ref|ZP_07278124.1| ribonuclease D [Streptomyces sp. AA4]
 gi|302434677|gb|EFL06493.1| ribonuclease D [Streptomyces sp. AA4]
          Length = 420

 Score = 42.0 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 69/238 (28%), Gaps = 34/238 (14%)

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET-IGSASFKIIT 396
           T++ +  +T  +   +    +        +   + +   + +   +L    G+ +     
Sbjct: 3   TAQADGARTGDETTEDSGTPVLLREPAEGTPPVVADPDALAEACARLAAGTGAVAVDTER 62

Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
            +                       +  +   + L    S           + L+ L+  
Sbjct: 63  AS--------------------GYRYWPKAYLVQLRREGSGTVLIDPIALADDLAPLRDV 102

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
             +     + H    D   L    +  R   D  L   +  +G     + ++ +  L YT
Sbjct: 103 LND--TEWVLHAASQDLPCLAELNLRPRSLFDTELAGRL--AGYERVALGTLVELLLGYT 158

Query: 517 RK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +         K  +P+D +       +A  +  ++ +L   L  +L  +  L    +
Sbjct: 159 LEKGHSAADWSKRPLPVDWL------NYAALDVELLNELREKLEAELTAQGKLEWARQ 210


>gi|296824092|ref|XP_002850547.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238838101|gb|EEQ27763.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 782

 Score = 42.0 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 72/206 (34%), Gaps = 34/206 (16%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121
             +FD P         PDYK  R         Q+ L R   + F  P     G EA+   
Sbjct: 83  IFVFDGPHR-------PDYKRGRLISKNAAGAQIELSRKLIELFSYPCHTAPG-EAE--- 131

Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--------EKIDIEHVIKKWG 173
                  ++ G    ++S D D + +      L +  K           +D+     + G
Sbjct: 132 -AECAKLQRTGVVDAVMSNDVDAL-MFGSKVTLLNYSKGSAKQSGAATHVDLYDTEAEDG 189

Query: 174 -----IPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLL-QEYG-NLENILINASRIK 225
                +    MV +  L+G   D  P G+P  G K AA +    +G +L  I+      +
Sbjct: 190 DSKVTLDTGGMVLVALLSG--GDYSPAGVPLCGPKLAAEIARAGFGEDLLGIMQGLLSGR 247

Query: 226 QKK-RRENILEYAETARLSRKLVMLR 250
             K   E + E+ E  RL  +L    
Sbjct: 248 PNKEATEALCEWRE--RLQYELETNH 271


>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 876

 Score = 42.0 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 89/269 (33%), Gaps = 37/269 (13%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE-------TI 427
           +     +   E      F + +  +D    + I IA   L++K +   K E        +
Sbjct: 496 EKFSLLINAFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPV 555

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL------HRYG 480
                VH   D      + ++    LK+F E ++  + +GHN++YD  +L      +  G
Sbjct: 556 KDSYYVHGFSDEM-LQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLG 614

Query: 481 I-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
               + F D + +      G  ++ + ++++ + +          K     D + D    
Sbjct: 615 KPKFKTFYDTLDIYRRFYPGNINYKLENLSKVYDT----------KHKPSHDAMDDIIAT 664

Query: 540 EHAIENSN------VILQLWLLLRPKLIV-----EKLLHVYERLDKPMIDVVSQMEITGI 588
              +  +         ++   L+   L       +KL  +++  +      +    + G 
Sbjct: 665 GELLVRAINEKIIPTSMERMALMSKHLKAFTAISKKLNELFKIAESKRPYELVACVMNGF 724

Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLS 617
            I        + E    L  L     DL 
Sbjct: 725 NIKSMYAGDENKEKLNRLRDLYALFRDLD 753


>gi|297243353|ref|ZP_06927286.1| ribonuclease D [Gardnerella vaginalis AMD]
 gi|296888600|gb|EFH27339.1| ribonuclease D [Gardnerella vaginalis AMD]
          Length = 476

 Score = 42.0 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 12/196 (6%)

Query: 383 KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           KL          + DT++A+  +   +A    +L    + +        D  +   +   
Sbjct: 6   KLLKEPREGVPEVIDTLEAYKDYCSLLASGSGSLAADAERASGFRYGHEDWLIQFKRKGA 65

Query: 441 GKNTLTKEILSYL-KKFFE----NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L    L+ L   + E          I H+   D       G+  R   D  + + +
Sbjct: 66  GIGLLDPIELTKLGADWNEFNKAVGDVPWIIHDSMQDLPGFFDIGLRPRALFDTEIAAKL 125

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  GR    ++S+ + +L  T   + K   ++    +      + +A  +  ++++L  +
Sbjct: 126 L--GRKRFGLSSVTEYYLGLT---LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEV 180

Query: 556 LRPKLIVEKLLHVYER 571
           +R +L  +  L   E 
Sbjct: 181 MRGELKKQGKLSWAEE 196


>gi|221124179|ref|XP_002154311.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 608

 Score = 42.0 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 83/214 (38%), Gaps = 30/214 (14%)

Query: 399 MDAFHSKP--IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
           ++ F      + +    +  +      V  I + L          + ++ +E    LKK 
Sbjct: 103 LECFQENLHFVGLDCEWVSNEKS---HVALIQLSLGTTCLIYRIPQLSINEEFPFQLKKL 159

Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDS--------GRSSH---DI 505
            EN   LK G  I  D   LH +G+++RGF D+ +++               + +    +
Sbjct: 160 LENPKILKFGVAIYEDVRRLHSHGVAVRGFVDLRILAQRCLPFITTKNSEDENKYKGMGL 219

Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--------- 556
            S++ K L+    +    + S+     +S  Q+  +A +++   L+++  L         
Sbjct: 220 QSLSYKLLNMNLDKSRNIQCSNWHATDLSKEQIL-YAAKDAIASLEVFYALGDVYNYCHN 278

Query: 557 RPKLIVEKLLHVYERLDKPMIDVV--SQMEITGI 588
           + KLI E   +    L +P + +V  +     GI
Sbjct: 279 KDKLINE--FNTQYNLTQPSVFLVEMACSMCQGI 310


>gi|148245871|gb|ABQ52898.1| DNA polymerase [uncultured marine microorganism]
          Length = 119

 Score = 42.0 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 13/116 (11%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD P+   +E+  L+  N   +I  L+ LE  K +  +    +    NI       
Sbjct: 1   AKIVTDAPLDFEIENCELKGFNFDAVIPILENLELKKFVKEINQLQEHFGGNI------- 53

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  +    +IDR  T + S F S S Q   +N  +  +K  L + Q +++  
Sbjct: 54  ------TLEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEKKESLIKPQIITEIE 103


>gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 461

 Score = 42.0 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 13/148 (8%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQK----DDTSFKVETIFIDLS------V 433
           L  +    F   T  +D      + +    +        +T   +      +        
Sbjct: 268 LRDLTFVVFDSETTGLDPQKDDVVQLGAVRIVNGRIIASETFEALVNPGRPIPAQSTKVH 327

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDIMLM 492
             S D          +    +++  N   + + HN  +D   L+R   I      D + +
Sbjct: 328 GISDDMVAGAPDFTVVRDNFQRYAANA--VLVAHNAPFDMAFLNRSDAIFQNPVMDTVHL 385

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEI 520
           S ++  G + H + ++  +      +++
Sbjct: 386 SAIVFGGSAEHTLDALCARLEVSIPEDL 413


>gi|327281940|ref|XP_003225703.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           [Anolis carolinensis]
          Length = 619

 Score = 42.0 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 80/189 (42%), Gaps = 24/189 (12%)

Query: 374 TKDIQQWVQK-LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432
            K+++  +QK LE            + D   +KP+++    +        ++  + ID  
Sbjct: 87  WKEVEPLLQKELEYCPVLGIDCEWVSADGKKAKPVSLLQLAVASGLCILLRLTHLTID-- 144

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIML 491
                       L K +L        +   LK+G     D   +L  YG+ ++G  D+  
Sbjct: 145 ---------GQVLPKTLL----HILGSGSILKVGVGCWEDAYKLLRDYGVIVKGTVDLRY 191

Query: 492 MSY----VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           ++      L   ++   + S+A+K L+Y+  +    R S+  ++++++ Q+  +A  ++ 
Sbjct: 192 LAMRQRKAL--PQNGLSLKSLAEKILNYSLDKSFHLRCSNWEVEELAEEQIT-YAARDAQ 248

Query: 548 VILQLWLLL 556
           V + L+L L
Sbjct: 249 VSVALFLHL 257


>gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
 gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
          Length = 910

 Score = 42.0 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|330927778|ref|XP_003301996.1| hypothetical protein PTT_13665 [Pyrenophora teres f. teres 0-1]
 gi|311322891|gb|EFQ89918.1| hypothetical protein PTT_13665 [Pyrenophora teres f. teres 0-1]
          Length = 314

 Score = 42.0 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLM 492
           LK   E+E   K+  +++ D   L  + G++++G ED+ LM
Sbjct: 92  LKDMLEDEKIPKVFFDVRNDSDALFTHFGVALQGIEDVQLM 132


>gi|89075742|ref|ZP_01162130.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
 gi|89048474|gb|EAR54049.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
          Length = 363

 Score = 42.0 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRS 501
           + +  E +  L     ++  +K+ H    D  V   + G       D  LM+  L     
Sbjct: 44  DPIEVEDMEPLWALLRDQSVIKVLHACGEDLEVFQHHAGCLPTPMFDTQLMAAFL-GHGI 102

Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           S    ++ ++++     E+ K    +  + +   ++  ++A  +   +  L+  L  K+ 
Sbjct: 103 STGFGALVKEYVGV---ELDKGEARTNWLARPLTAKQLDYAAADVYYLKPLFETLLAKVE 159

Query: 562 VEKLLHVYER 571
               +   ++
Sbjct: 160 KRGYMEALQQ 169


>gi|156843134|ref|XP_001644636.1| hypothetical protein Kpol_526p31 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115283|gb|EDO16778.1| hypothetical protein Kpol_526p31 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 487

 Score = 42.0 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 98/294 (33%), Gaps = 61/294 (20%)

Query: 8   FLVDGSSFIYRAFYATPLLSRKHD---GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             +DG ++++RA       S  HD   G P +    +     K L   +   I  +F   
Sbjct: 27  LAIDGYAWLHRA-----SCSCAHDLVLGNPTD---KYLQFFIKKLAMLKSYGIKPYFVFD 78

Query: 65  FDY---------PAVTFRNE-------IYPDYKANRPKIP------EMLLPQLPLVRLAT 102
            D               R E       +Y      R  +       ++       V    
Sbjct: 79  GDSLPVKKDTEVKRRNKRVENREVAIRLYNS-GEVRNSMDYFQKCVDVTPEMAKCVMDYC 137

Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK 162
           Q   I  I    FEAD  +         +G    IIS D DL+               E 
Sbjct: 138 QIHHIDYIVAP-FEADAQMVYLEKQNIVQG----IISEDSDLLIFGCRRLITKLNDFGEC 192

Query: 163 I-----DIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
           I     D   + KK+    +  E +  +  L+G   D   GIP IG   A  L+ +Y N+
Sbjct: 193 IEICKDDFNKLPKKFPLHELSEEGIKTMVCLSG--CDYTNGIPRIGLVKAIKLVHQYRNI 250

Query: 215 ENILINASRIKQKKRRENILEYAETA-----------RLSRKLVMLRTDVPITI 257
           + IL++  R  + +  E  L+    A            +S K+V    D+P+ +
Sbjct: 251 DKILLSIRRDGKFQIPETFLQEYHKAVIAFEYQRVFCPISEKIVT-LNDIPMEV 303


>gi|83858515|ref|ZP_00952037.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633]
 gi|83853338|gb|EAP91190.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633]
          Length = 384

 Score = 42.0 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 27/196 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +T+ + Q   KL      +          F  +   I               +   
Sbjct: 2   EWIADTESLAQACAKLRQAEYVAVDTEFMRESTFWPQLCLI---------------QAAG 46

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG--ISMRGF 486
            D  V     + G +      L        +++ +K+ H  + D  +    G  I  +  
Sbjct: 47  DDTEVLIDPLAEGLD------LQPFYDLLTDQNVIKVFHACRQDLEIFFHEGGGIIPKPL 100

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  + +  +  G S     ++ +  +     +   SR +      +SD Q +E+A+ + 
Sbjct: 101 FDSQIAAMAVGLGDSI-SYDNLVRALVKVNLDK--GSRFTDWSRRPLSDKQ-KEYALADV 156

Query: 547 NVILQLWLLLRPKLIV 562
             +  L+ +LR KL  
Sbjct: 157 THLRDLFPILREKLAK 172


>gi|119487547|ref|ZP_01621157.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
 gi|119455716|gb|EAW36852.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
          Length = 309

 Score = 42.0 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 84/262 (32%), Gaps = 32/262 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +   + IQ  + +L +                        ++    K   S  ++ +   
Sbjct: 4   LTTPESIQAVISQLSSAEILWLDTE---------------VADYKNKPRLSL-IQVLTTP 47

Query: 431 LSVHTSQDSTGKNTLTKEILSYL-KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDI 489
             + +            E+ +   ++   N    K+ HN  YD  +L +     +     
Sbjct: 48  NEIKSDHLYLFDVLDQPELTTLFIEEIMANPAIEKVFHNANYDLKLLGK--KQSKNVTCT 105

Query: 490 MLMS----YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           ++M+    Y L    + + + ++A +   +T   I K  +SS    +    +  E+A  +
Sbjct: 106 LVMAKKIPYYLLPVPN-YQLKTLATQLGDFTN--IDKQEQSSDWGQRPLTEKQLEYAQMD 162

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605
              + Q+   L   L ++ L       +   ++ ++      I  D   L      I   
Sbjct: 163 VVYLAQIHQCL---LKLQPLASPDPTTE--DLNKLATRYQE-IAHDWKQLDSEITHIQDR 216

Query: 606 LLSLEENIYDLSGEKFNLSSPK 627
           L    +       + F LSS +
Sbjct: 217 LKQAMKTQQVDQTDSFKLSSSQ 238


>gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 1466

 Score = 42.0 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS------TLDQKDDTSFKVET---IFIDLSVH 434
           L       F + T  + A ++  I IA S       ++Q D+             +L+  
Sbjct: 423 LHEATYVVFDVETTGLSAINNDLIQIAASKMYKGNIIEQFDEFINPGHPLSSFTTELTGI 482

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T     G  TL + +L   + F ++   + + HN  +D   ++    R+ + +  +   D
Sbjct: 483 TDNHLIGAKTLLQ-VLEAFQAFCQDA--ILVAHNASFDVGFMNANYERHHLPLIKQPVID 539

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 540 TLEFARNLYPEYKRHGLGPLTKRF 563


>gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1407

 Score = 42.0 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 87/220 (39%), Gaps = 26/220 (11%)

Query: 392 FKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFI-DLSVHTSQDSTGKNTLTKE- 448
           F I T  +   + + I I A+   + K   +F+        +S   ++ +    ++ K+ 
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDESIVKDA 456

Query: 449 --ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMRG-FEDIMLMSYVLDSGR 500
             I   L  F E + + + + HN  +D   +     ++ +++     D + +S  L    
Sbjct: 457 PSIEEILPNFLEFSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHLYKDL 516

Query: 501 SSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLL 555
            ++ + ++++     L +  + +  +R ++    K  D   ++    +++ N IL+   +
Sbjct: 517 KNYKLDTLSEHLQVKLEHHHRAVDDARATAEIFIKTIDRLKELGVKKVKDINAILRESEV 576

Query: 556 LRPKL----------IVEKLLHVYERLDKPMIDVVSQMEI 585
              KL            + L ++YE + K  ++   +   
Sbjct: 577 DIRKLPVYHVTILVKDQKGLRNLYEIISKSNLEYFHRTPR 616


>gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score = 42.0 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 16/136 (11%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I I    L     T   +             D+   + +T E L 
Sbjct: 6   FDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGITDEFLK 65

Query: 452 YLKKFFENE--------HFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSYVL 496
             K F E              I HN  +D       L R G   I      D + M+   
Sbjct: 66  DKKPFAEVAEEILTFFGDAKWIAHNATFDMGFINAELARIGLPPILPERVLDTLSMARRK 125

Query: 497 DSGRSSHDIASIAQKW 512
                 + + ++ +++
Sbjct: 126 HP-MGPNSLDALCRRY 140


>gi|254192262|ref|ZP_04898751.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157987457|gb|EDO95233.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 310

 Score = 42.0 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 25/113 (22%)

Query: 460 EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
           +  L + HN  +D+  L     R GI+        + +S  L    S H + ++ ++   
Sbjct: 20  DGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH-- 77

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
                                   +  A+ ++++I Q W  L   +  E+L  
Sbjct: 78  ------------------ALAPSARHRALADADLIWQFWQKLHAVIPAEQLSE 112


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score = 42.0 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 98/322 (30%), Gaps = 49/322 (15%)

Query: 268 NGPRLISFLK-ALEFTKL--INRVATTYDCDAANIEPVVL-----DINTTENKGIAIETE 319
           NG  LI      L  T +  I +     +    + EP+           ++  G++  ++
Sbjct: 333 NGLALIDKFDSELTITSIKGIKKCEKFEENIRTDNEPLKRVELHCHTKMSDFDGVSSASD 392

Query: 320 IDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQ 379
           I            +++D  +     +        ++    +  + +D    + N      
Sbjct: 393 IINQAKNWGMDAIAITDHGNIQGFTEASHVKNPPKIIYGVEGYLVDDLKELVTNP----- 447

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----DTSFKVETIFIDLSV-- 433
            + K    G   F I T    A +     I    + + +     ++F      I   +  
Sbjct: 448 -MDKTLDDGFIVFDIETTGFSAKNDAITEIGAVKVVKGEIVDRFSTFVNPRRPIPFKIEE 506

Query: 434 --HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-----GF 486
             H S          ++IL     F E+   + + HN  +D   +      +        
Sbjct: 507 LTHISDAMVMNAPFIEDILPKFLDFCEDY--IIVAHNAGFDTGFIRENAKKINKEYNPSI 564

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D + M+ +L    +   + ++  K L+ + +                       A+ ++
Sbjct: 565 IDTVAMARLLLPELNRFKLDTVC-KALNISLE-------------------GHHRAVNDA 604

Query: 547 NVILQLWLLLRPKLIVEKLLHV 568
               Q+W+    +L  + +  +
Sbjct: 605 EATAQIWVEFIKRLKDKGISKL 626


>gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 1449

 Score = 42.0 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 48/141 (34%), Gaps = 16/141 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ-- 437
           +K++      F I T  +++  +K I I    +      D   ++    I +  H ++  
Sbjct: 415 KKIDEEEFVVFDIETTGLNSHTNKIIEIGAVKIKAGRIIDRYSQLINPGISIPYHITEIT 474

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMR-GFE 487
               +         E++    +F  +   + + HN  +D   + R       I +     
Sbjct: 475 SITNEQVANQPKIDEVIGKFVEFIGDA--VLVAHNAPFDMGFIKRDIKEYLNIDLESSVI 532

Query: 488 DIMLMSYVLDSGRSSHDIASI 508
           D + M+  L      + +  +
Sbjct: 533 DTLQMARDLFPDFKKYGLGDL 553


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score = 42.0 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 37/220 (16%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----DTSFKVETIFIDLSVHTSQDSTG 441
                 F I T       +K I I    ++        ++F    + I   +      + 
Sbjct: 510 DHTCVVFDIETTGFSPLKNKIIEIGAVKVENGKIVDRFSTFVNPEVPIPFEIEKLTSISD 569

Query: 442 KNTL-TKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLHRYGISMRG------FEDIMLMS 493
              L   +I   L KF E     + + HN  +D   + R+   ++G        D + M+
Sbjct: 570 NMVLGAPKIEEVLPKFLEFCSDAVMVAHNASFDMSFI-RHNAMIQGKSFEPTVLDTVSMA 628

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    +   + ++A++                    +IS       A++++    +++
Sbjct: 629 RFLLPNLNRFKLDTVAKEL-------------------RISLEN-HHRAVDDAGATAEIF 668

Query: 554 LLLRPKLI---VEKLLHVYERLDKPMIDVVSQMEITGIQI 590
           +     L    +E L  + E+     ++ + +M    I I
Sbjct: 669 VKFVEMLKSRGIENLDELNEQSRM-SVETIRKMPTNHIII 707


>gi|195327281|ref|XP_002030350.1| GM25386 [Drosophila sechellia]
 gi|194119293|gb|EDW41336.1| GM25386 [Drosophila sechellia]
          Length = 267

 Score = 42.0 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKY-DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           I   L K  E +   K+ H        +LHR+ IS+ G  D  +   ++   R  + +  
Sbjct: 100 IFLELAKILEADQPRKVIHYSHRIADHLLHRHRISLGGIFDTFVALCLISETRIPYTLPE 159

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLL 556
                     +++ K+ +S         +  Q  +  +   +   +   L
Sbjct: 160 AISLVFGLPMEKVTKACESQRNFTARPLTHSQMRYLAKMVQLQHIMHDRL 209


>gi|31711663|ref|NP_853581.1| similar to exonulease [Enterobacteria phage SP6]
 gi|31505667|gb|AAP48760.1| gp21 [Enterobacteria phage SP6]
 gi|40787038|gb|AAR90012.1| 20 [Enterobacteria phage SP6]
          Length = 342

 Score = 42.0 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 63/196 (32%), Gaps = 37/196 (18%)

Query: 73  RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII-----ATYTYI 127
           R      YK  R         ++    ++     +      G EADD++      ++   
Sbjct: 106 RLAFTKPYKGTRKADKPPFFYEMRQHLISVHGAELA----DGEEADDLMSIAQWDSHNRF 161

Query: 128 AEKEGFA-------------VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174
            ++ G                 I+S DKDLM  + P   L    + + +     +     
Sbjct: 162 LQEVGNEFSIGSPEHKVFSDTVIVSADKDLM--IVPGWHLQPGSEMKWVKPMGWLDLRRK 219

Query: 175 PPEKMVCLQA----------LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224
              ++  L+           + GD IDN  GIPG G K A  LL      + + +     
Sbjct: 220 NNGQVKDLKGAGLKFFYAQMIIGDDIDNYAGIPGRGAKYAYDLLDSCKTEKELYMAVLGA 279

Query: 225 KQKKRRE---NILEYA 237
            + K  E    +  + 
Sbjct: 280 YKSKFGEGPVKLKNHR 295


>gi|118379200|ref|XP_001022767.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89304534|gb|EAS02522.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 722

 Score = 42.0 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 30/226 (13%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
           P   + Y  I     +Q  +  L                 +      I IST        
Sbjct: 19  PFQPEKYILIDTLNKLQDLIPILLEQTRLGIDTEQSFAKTYEGFLCLIQISTDQN----- 73

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YG 480
                           D  G N+  + I   L K F  +  +KI +  + D L L R + 
Sbjct: 74  ------------DYLIDVLGINS-KQGINECLSKVFLCKDIIKIFYAGQQDILWLKRDFD 120

Query: 481 ISMRGFEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK-----IS 534
           +S+  + D+    S++  S  +S  +  +  ++ +Y    + K +K  + + +     +S
Sbjct: 121 LSVVNYFDVKECASFLKKSDDNS--LIQLIDRYCNYK---LDKQKKKELQVSEWSNRPLS 175

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580
             Q+   A+++  +I   + LL   +         E +++     +
Sbjct: 176 KEQLDYAALDSHYLIKIRYELLCETIQSVGFKRTIEVINQMQQQTL 221


>gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 296

 Score = 42.0 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 76/207 (36%), Gaps = 26/207 (12%)

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK--------DIQQWVQKLE 385
           +S+  +    +QT ++    +L    + P    +   ++NT+        + ++W+    
Sbjct: 61  ISNNEAAPEVKQTNKQKTTVKLNVTIEGPKQQPAPAPVLNTQSVNHRININTKKWLNTCN 120

Query: 386 TIGSASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVET-IFIDLSV----HTSQ 437
                +  + T  ++    K + IA       +  D  +  +   I I  S     H + 
Sbjct: 121 EF--VAIDLETTGLNPAIDKIVEIAAVKFKYGEIIDSYTTLINPGIHIPSSASKINHITD 178

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM-RGFEDIMLM 492
           ++        E+L  L  F  +   + + HN  +D   L     + G  +   F D +  
Sbjct: 179 ETVHGAPDLSEVLPNLLNFIGD--SILVMHNASFDLKFLKYHAAKLGYDISNPFIDTLPT 236

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKE 519
              L +   ++ +A++A  +L  +  +
Sbjct: 237 CKKLFTDFENYQLATVA-NYLKISTAD 262


>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
 gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
          Length = 1449

 Score = 42.0 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 46/141 (32%), Gaps = 16/141 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ-- 437
           +K++      F I T  +++  ++ I I    +      D   ++      +  H ++  
Sbjct: 415 KKIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEIT 474

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FE 487
               +         E++     F  +   + + HN  +D   + R       I  +    
Sbjct: 475 SITDEQVANEPKIDEVIGKFVDFVGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQCSVI 532

Query: 488 DIMLMSYVLDSGRSSHDIASI 508
           D + M+  L      + +  +
Sbjct: 533 DTLQMARDLFPDLKKYGLGDL 553


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1410

 Score = 42.0 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 26/198 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS--------- 436
                 F I T  + + +   I I    +  KD         F++  +H S         
Sbjct: 396 DDSFVVFDIETTGLSSINDSIIEIG--AVKIKDCQIVDTFETFVNPQIHISNFITKLTGI 453

Query: 437 -QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM-RGFEDIM 490
             D   +     E+L    +F +      + HN  +D   +       GI +     D +
Sbjct: 454 TDDMVKRYPPIDEVLPKFLEFIKGSTL--VAHNANFDVTFIKTKAKNLGIEVDNPVLDTL 511

Query: 491 LMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
            +S  +     ++ + ++AQ     L    + +  +R ++    K S ++++E+ IE  N
Sbjct: 512 ELSRHMYENLKNYKLDTVAQHLGVSLENHHRAVDDARATAEIFLK-SINKLKENGIEKVN 570

Query: 548 VILQLWLLLRPKLIVEKL 565
            I      L+ K+ ++K+
Sbjct: 571 EINSY---LKNKVDIKKM 585


>gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68]
          Length = 385

 Score = 42.0 bits (97), Expect = 0.57,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 100/294 (34%), Gaps = 21/294 (7%)

Query: 460 EHFLKIGHNIKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              L   HN  +D+ VL     R    +  + D M+ +    +      +  + +     
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQAL---AHGLPGSLGELCEILGVP 121

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERL- 572
             K   K  K+ I +      +  +     S    + W        L +E +  VY+RL 
Sbjct: 122 QDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLP 181

Query: 573 -------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
                  +  +     Q+   G+ +D  L +     + +    L +   +++  +   ++
Sbjct: 182 KWNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAAT 241

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            +   D L   +    G +    Q  T  + +   +   + + + +   +Q S   ++  
Sbjct: 242 QR---DALIKHIVESYGVELPDMQRSTLERRIADPDLP-SAVKELLAIRQQASTTSTSKY 297

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
            +L   ++   +   T     ++ TGR A      QN+P  +   ++I     +
Sbjct: 298 KALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEA 351


>gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 893

 Score = 42.0 bits (97), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 26/154 (16%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF-------------- 428
           K  +     F   T  +D +    I IA   L         ++                 
Sbjct: 506 KAFSGDMVVFDTETTGLDVYEDDIIEIAAIRLHNGKPVGEPLDLYIETNRPILEKLGENE 565

Query: 429 IDL-SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI------ 481
             L  ++  + + G+     E       +  +   L  GHN+ YD+ +LH   +      
Sbjct: 566 NPLYPIYHEKLAKGELLQPNEAFQLFWNYVGDATLL--GHNVMYDRNILHHNLLRHAQDC 623

Query: 482 ---SMRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
                    D + +  +L     S+ + ++ +++
Sbjct: 624 MENHANPVFDSLKIMRLLQPNLPSYKLETLLERF 657


>gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 227

 Score = 42.0 bits (97), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 59/200 (29%), Gaps = 38/200 (19%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               T         + + I           + +   ++++       ++   + L++E L
Sbjct: 6   LDTETTGFKPEEGHRLVEIG-CIELVNHLATGERFHVYLNPERDMPPEAFAVHGLSEEFL 64

Query: 451 SYLKKFFEN---------EHFLKIGHNIKYDKLVLHRYGISMRGF--------EDIMLMS 493
           +  K  F +              + HN  +D   L  + + + G+         D +LM+
Sbjct: 65  AD-KPLFNDVAADFVAFIGDSPLVIHNAAFDMHFL-NWELKIAGYPVMPKDRAIDTLLMA 122

Query: 494 Y--------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPIDKISDS 536
                     LD+      + +         +  + L+    E+L  R++ +       S
Sbjct: 123 RQKFPGSPATLDALCKRFGVDNSNRTLHGALLDAQLLAEVYLELLGGRQTGLSFAGGPVS 182

Query: 537 QVQEHAIENSNVILQLWLLL 556
           +         +   +   + 
Sbjct: 183 KGGVAGPVRVDRPFREARVF 202


>gi|148552971|ref|YP_001260553.1| ribonuclease D [Sphingomonas wittichii RW1]
 gi|148498161|gb|ABQ66415.1| ribonuclease D [Sphingomonas wittichii RW1]
          Length = 395

 Score = 42.0 bits (97), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 61/202 (30%), Gaps = 25/202 (12%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
             +   +  I ++  +     +L                 +      I I+  ++     
Sbjct: 2   HESMHIHPLITDSATLANLCTRLAASPYVVVDTEFMRESTYWPDLCLIQIANSEEAAAI- 60

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-G 480
                           D   K+     +L  L    ENE  LK+ H    D  ++H   G
Sbjct: 61  ----------------DPKAKDIDLTPLLDLL---VENEEVLKVFHAGGQDLEIVHNLTG 101

Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
            +     D  + +  +  G      +++ +  L      + K  + +    +  D +  +
Sbjct: 102 KTPYPLFDTQVAAMAMGLGEQI-GYSNLVETMLGIK---LDKGARFTDWARRPLDKRQID 157

Query: 541 HAIENSNVILQLWLLLRPKLIV 562
           +AI +   +  ++  +  +L  
Sbjct: 158 YAIGDVTHLSAIFPRMLERLRK 179


>gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 466

 Score = 42.0 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 27/207 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ-- 437
           QK E    A   I T+   A H     IAI   + K+  D    +      +  H     
Sbjct: 4   QKSEQPLYAIVDIETNGSAAAHGGITEIAIFLHNGKEIIDEYQTLVNPEKPIPFHIQTLT 63

Query: 438 --------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRG 485
                   D+   + + K++ SYL      E  + + HN+ +D   LH+     GI  + 
Sbjct: 64  GITPEMLVDAPRFDEVAKDVYSYL------EKAIFVAHNVSFDFSFLHKQFLDVGIDWKP 117

Query: 486 FE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEH 541
            +   + ++  +  G +S+ + S+ +     L    +    ++ ++I  +++  +  QE 
Sbjct: 118 IKLCTVRLARKIFPGYTSYSLGSLCKNLNIPLHDRHRAAGDAKATTILFEQLLQND-QER 176

Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHV 568
            IE  +      L L   L  + L H+
Sbjct: 177 WIEKMSKTNAKILRLPSNLKHQNLEHL 203


>gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707]
 gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707]
          Length = 413

 Score = 42.0 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS 501
               T E L  L+          + H+   D   L   G+      D  L   +  +G  
Sbjct: 76  DPIPTAEDLEPLRDAIN--GLEWVLHSADQDLPCLAELGLEPAALFDTELAGRL--AGFE 131

Query: 502 SHDIASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
              +A+I ++ L     E+ K    +      + D+ +  +A  +  V+L+L   +  +L
Sbjct: 132 RVGLAAIVERTLGL---ELRKGHGAADWSTRPLPDAWL-NYAALDVEVLLELREAMATEL 187

Query: 561 IVEK 564
             + 
Sbjct: 188 AAQG 191


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score = 42.0 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI---FIDLSVHTSQDST 440
           L       F + T  + A +   I +A +    K +     +        LS  T + + 
Sbjct: 418 LTDATYIVFDVETTGLSAVYDTIIELA-AVRMHKGNVEGSFDEFIDPGHPLSRTTVELTG 476

Query: 441 GKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFED 488
             + +       +E+L   ++F  +E  + + HN  +D   L     +YGI        D
Sbjct: 477 ITDEMVRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVID 534

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L        +  +++K+
Sbjct: 535 TLELARYLYPEFKRFGLGVLSKKF 558


>gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S]
 gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S]
          Length = 445

 Score = 42.0 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS 501
               T E L  L+          + H+   D   L   G+      D  L   +  +G  
Sbjct: 108 DPIPTAEDLEPLRDAIN--GLEWVLHSADQDLPCLAELGLEPAALFDTELAGRL--AGFE 163

Query: 502 SHDIASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
              +A+I ++ L     E+ K    +      + D+ +  +A  +  V+L+L   +  +L
Sbjct: 164 RVGLAAIVERTLGL---ELRKGHGAADWSTRPLPDAWL-NYAALDVEVLLELREAMATEL 219

Query: 561 IVEK 564
             + 
Sbjct: 220 AAQG 223


>gi|300784546|ref|YP_003764837.1| ribonuclease D [Amycolatopsis mediterranei U32]
 gi|299794060|gb|ADJ44435.1| ribonuclease D [Amycolatopsis mediterranei U32]
          Length = 407

 Score = 42.0 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 13/125 (10%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           L+ L++   +     + H    D   L   G+      D  L   +  +G     + ++ 
Sbjct: 83  LAPLREVLNS--LEWVLHAASQDLPCLAELGLHPAALFDTELAGRL--AGYERVALGTLV 138

Query: 510 QKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
           +  L YT +         K  +P+D +       +A  +  +++QL   L  +L  +  L
Sbjct: 139 ELLLGYTLEKGHSAADWSKRPLPVDWL------NYAALDVELLIQLREKLEAELGAQGKL 192

Query: 567 HVYER 571
               +
Sbjct: 193 EWARQ 197


>gi|291387124|ref|XP_002710085.1| PREDICTED: Gen homolog 1, endonuclease [Oryctolagus cuniculus]
          Length = 904

 Score = 42.0 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV- 158
                 GIP ++  G EA+ + A        EG+    ++ D D     + T     T+ 
Sbjct: 119 DLLDCLGIPWVQAAG-EAEAMCAYLN----AEGYVDGCLTNDGDAFLYGAQTVYRNFTMN 173

Query: 159 -KEEKID---IEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIGYKTAALLLQ 209
            K+  +D   +  +  + G+  + +V L  L G   D +P G+PG+G + A  L+Q
Sbjct: 174 VKDPHVDCYSMSSIKVQLGLDRDALVGLAILLG--CDYLPKGVPGVGKEQALKLIQ 227


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score = 42.0 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI---FIDLSVHTSQDST 440
           L       F + T  + A +   I +A +    K +     +        LS  T + + 
Sbjct: 418 LTDATYIVFDVETTGLSAVYDTIIELA-AVRMHKGNVEGSFDEFIDPGHPLSRTTVELTG 476

Query: 441 GKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFED 488
             + +       +E+L   ++F  +E  + + HN  +D   L     +YGI        D
Sbjct: 477 ITDEMVRGSKSEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVID 534

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L        +  +++K+
Sbjct: 535 TLELARYLYPEFKRFGLGVLSKKF 558


>gi|192361069|ref|YP_001982899.1| ribonuclease D [Cellvibrio japonicus Ueda107]
 gi|190687234|gb|ACE84912.1| ribonuclease D [Cellvibrio japonicus Ueda107]
          Length = 378

 Score = 42.0 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 27/192 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I     + +        G+ +        D F+  PIA  +   D K         +   
Sbjct: 10  IERADQLAELCVGWRQQGAIAVDTEFMRTDTFY--PIAGLLQIGDGKG------CYLIDP 61

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           L++   Q               L++   +   +K+ H+   D  V  R   +      D 
Sbjct: 62  LAIADWQP--------------LRELLLDGKVIKVLHSCSEDLEVFQRWLDLVPSPLFDT 107

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + +   + G      A++ +  L     EI K    S  + +       ++A  +   +
Sbjct: 108 QIGAAFANLGFGL-GYANLVKTLLGI---EIPKDETRSDWLQRPLSQSQLKYAALDVAHM 163

Query: 550 LQLWLLLRPKLI 561
           L ++  L   L 
Sbjct: 164 LVVYGKLLQILK 175


>gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 375

 Score = 42.0 bits (97), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 59/194 (30%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF---IDLSVHTSQDST 440
                     + T    +   +   I +  +     +++         I   +      +
Sbjct: 10  ACEQPLVFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTTLVNPGQSIPPFIQQLTGIS 69

Query: 441 GKNTLTKEILSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
                     + L    FE  +  L + HN  +D+  L     R GI+        + +S
Sbjct: 70  DDMVRDAPSFASLAPTLFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLS 129

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    + H + ++ ++                +P         +  A+ +++++ Q W
Sbjct: 130 RALFPREARHGLDALIERH-------------GLVP-------AARHRALADADLLWQFW 169

Query: 554 LLLRPKLIVEKLLH 567
             L   + +E+L  
Sbjct: 170 RQLHEIVPLERLRD 183


>gi|307825065|ref|ZP_07655286.1| ribonuclease D [Methylobacter tundripaludum SV96]
 gi|307733813|gb|EFO04669.1| ribonuclease D [Methylobacter tundripaludum SV96]
          Length = 389

 Score = 42.0 bits (97), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/209 (10%), Positives = 67/209 (32%), Gaps = 29/209 (13%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
            ++   I     + +  ++++     +          ++ K   + I+T +         
Sbjct: 2   TNNIQYINTPDQLVKLCEQIKKEPWLALDTEFLREKTYYPKFCLLQIATPEWV------- 54

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISM 483
                 +++ +              L  L +   +   +K+ H+ + D  + ++  G   
Sbjct: 55  -ACIDPIALPS--------------LDILFEAIYSPSIVKVFHSCRQDLEIFYQLTGKLP 99

Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHA 542
               D  + + +L   + +   A +    L+      L    +     K      + ++A
Sbjct: 100 EPLFDTQIAAPLL-GFQENPGYAMLVSSLLNVN----LNKAHTRADWSKRPLIDAEIQYA 154

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYER 571
            ++   + +++ ++  KL         ER
Sbjct: 155 ADDVIYLCKIYQMMLQKLAELGRAEWLER 183


>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 264

 Score = 42.0 bits (97), Expect = 0.59,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 34/184 (18%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIG---------SASFKIITDTMDAFHSKPI 407
              +  + + +  +I + +  ++ +   +  G            F + T  + A     I
Sbjct: 17  WNQEQNMKSGTEDRISDIRKGKRTMAAADNRGKRLSKYVDNYVVFDLETTGISAVKDDII 76

Query: 408 AIA------------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
            I+             S L           T    ++    Q   G   +  E L     
Sbjct: 77  EISALKVKNHEQVETFSRLVNPRRPIPAGATKVNGITDEMVQSEPGLEFILPEFLD---- 132

Query: 456 FFENEHFLKIGHNIK-YDKLVLHRYGIS------MRGFEDIMLMSYVLDSGRSSHDIASI 508
            F +   L IGHNI+ +D L L+R          +  F D + M+  L  G S H +  +
Sbjct: 133 -FIDGEIL-IGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTLFMARALLPGLSRHRLTDL 190

Query: 509 AQKW 512
           A  +
Sbjct: 191 ADYF 194


>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
 gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
          Length = 1452

 Score = 42.0 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           L+      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 431 LKDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 488

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + GI        
Sbjct: 489 GITDDMVKGSDPIDVVLQRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVV 546

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 547 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 600


>gi|296270237|ref|YP_003652869.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
 gi|296093024|gb|ADG88976.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
          Length = 403

 Score = 42.0 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           L  L +   +     + H    D   L   G   R   D  L + +L  G     +A++ 
Sbjct: 79  LGELDRVLADAEI--VLHAATQDLPCLAELGFRPRRLFDTELAARLL--GYERVGLATMV 134

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           +  L    +   K   ++    +        +A  +  V+++L   L  +L+    L 
Sbjct: 135 EVVLGLRLE---KGHSAADWSRRPLPEDWLRYAALDVEVLVELRDALYEQLVESGKLE 189


>gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score = 42.0 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I I    L     T   +             D+   + +T E L 
Sbjct: 6   FDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGITDEFLK 65

Query: 452 YLKKFFENE--------HFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSY-- 494
             + F E              I HN  +D         R G   I      D + M+   
Sbjct: 66  DKQPFAEVAEQILTFFGDAKWIAHNATFDMGFINAEFARIGLPPILPERVLDTLSMARRK 125

Query: 495 ------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPIDKIS-DSQV 538
                  LD+    + I +         +  + L+    E++  R++++ +  +   +Q 
Sbjct: 126 HPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQAALGLGMVGKSNQA 185

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
               +   + ++   LL RP+ +  +L    E+  + ++  + +
Sbjct: 186 ARGEMGMEDDVVIAALLERPRPLAPRLSQTEEQAHEALVAKLGE 229


>gi|71416479|ref|XP_810270.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874777|gb|EAN88419.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 387

 Score = 42.0 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 86/284 (30%), Gaps = 33/284 (11%)

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
            +       S+ TP           S   I    Y  +   + + + V  L    S +  
Sbjct: 18  ATPAAGSSLSKGTPSSASSSASISPSSLAILKYPYEVVDTPEKLDEAVGSLLKARSIALD 77

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           I          +   I++           +  +    +       +    T  K +    
Sbjct: 78  IEAFCTTEQAKQLGRISL----------LQACSDAKPVVFLFDVLTLTAPTFVKSV---- 123

Query: 454 KKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIML----MSYVLDSGRSSHDIASI 508
           + F  N    K+  + + D   L  + G+   G  D+ +    + + L S      +  +
Sbjct: 124 EPFLRNRGIRKLLFDCRRDVEALSSQLGLKPEGVLDLQVFFTAIQWKLRSVNRRSGMTYV 183

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKIS-------DSQVQEHAIENSNVILQLWLLLRPKLI 561
            +     TR++   + ++++ +                E+A ++   IL L   L  K  
Sbjct: 184 LKSVAGLTRQDGDSAVQAAMALGNRPVWDIRPLPDHFLEYAADDVRHILLLANHLVEKRE 243

Query: 562 -------VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                  VE+L   Y         V  + + T  +++   L++ 
Sbjct: 244 FPVDLVSVERLTAQYVEHYAVGKPVTEEADATPAEVNVAWLERY 287


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score = 41.6 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 99/295 (33%), Gaps = 21/295 (7%)

Query: 460 EHFLKIGHNIKYDKLVLH----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              L   HN  +D+ VL     R    +  + D M+ +    +      +  + +     
Sbjct: 65  PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQAL---AHGLPGSLGELCEVLGVP 121

Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERL- 572
             K   K  K+ I +      +  +     S    + W        L +E +  VY RL 
Sbjct: 122 QDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLP 181

Query: 573 -------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625
                  +  +     Q+   G+ +D  L +     + +    L +   +++  +   ++
Sbjct: 182 KWNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAAT 241

Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685
            +   D L   +    G +    Q  T  + +   +   + + + +    Q S   ++  
Sbjct: 242 QR---DALIKHIVESYGVELPDMQRSTLERRIADPDLP-SAVKEMLAIRLQASTTSTSKY 297

Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740
            +L   ++   +   T     ++ TGR A      QN+P  +   ++I     +P
Sbjct: 298 KALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEAP 352


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 1439

 Score = 41.6 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 14/144 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHS---KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
           + L       F I T  +   +    +   + +    + D  S  +      +  H  Q 
Sbjct: 416 ETLADAEYVVFDIETTGLSIINCKIIELAGVKMRGGQEIDRFSTFINP-HEKIPYHIQQL 474

Query: 439 STGKNTL---TKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLHRY----GIS--MRGFED 488
           +   + +     E+   L++F E     + + HN ++D   +       G+   M    D
Sbjct: 475 TNITDEMVVDAPELEPKLREFVEFIGDAVLVAHNARFDIGFIQANCKAIGLPEVMNPVLD 534

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L     +H + +++ ++
Sbjct: 535 TLELARFLHPSMKNHRLNTLSARY 558


>gi|195037619|ref|XP_001990258.1| GH19240 [Drosophila grimshawi]
 gi|193894454|gb|EDV93320.1| GH19240 [Drosophila grimshawi]
          Length = 911

 Score = 41.6 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 94/292 (32%), Gaps = 32/292 (10%)

Query: 275 FLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334
              A    +   R     D  A N     L       K +A+  E D     +     S 
Sbjct: 194 LFTAPNIMRPQMRFKVPVDNSATNPFQPRLTEKPNSLKPLALLPEYD-----EADNIVSF 248

Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394
                    +  P K  L++       P        + + + +QQ + +L      +  +
Sbjct: 249 LHPYEFELLKFEPAKEQLQKQNPQMPAPPEKTELMLVDSVEKLQQALAELRLAHQIAIDV 308

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
              +   F      + I+ L Q                   ++D      + ++ +  L 
Sbjct: 309 EHHSYRTF------MGITCLVQMST---------------RTKDYIFDTLILRDDMHILN 347

Query: 455 KFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
               +   LKI H    D   L R   + +    D    +  L+  R S  +A + + +L
Sbjct: 348 LVLTDPKVLKILHGGDLDIEWLQRDLSLYIVNMFDTHRAAKALNLARLS--LAFLLKFYL 405

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
                ++ KS + +    +    ++ ++A ++++ ++ ++  L   L+  + 
Sbjct: 406 DM---DVDKSLQLADWRMRPLPQKLIDYARQDTHYLIYIYERLVNDLLQSEQ 454


>gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
 gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
          Length = 1442

 Score = 41.6 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS--------- 432
           Q L+      F I T  +     + I      +        K++ +   +          
Sbjct: 402 QNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFLVKPIQQINENITNL 461

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGIS-MRGFE- 487
            + SQ+        K  L  +K+ F+N        I  +I +    L ++G+  ++    
Sbjct: 462 TNISQEMVNNAIDEKTALLKIKEIFDNHILVAHNGINFDINFINQRLLKWGLEPLKNPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++S  ++  +S H + +I +K+      EI 
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDEIA 554


>gi|147797616|emb|CAN65003.1| hypothetical protein VITISV_023489 [Vitis vinifera]
          Length = 393

 Score = 41.6 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
           + I    +  D         + L+   +          ++++   K   E+ +  K+ H+
Sbjct: 55  LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGEKLMKACKPALESSYITKVIHD 114

Query: 469 IKYDKLVLH-RYGISMRGFEDIM 490
            K D   L+ ++GI +    D  
Sbjct: 115 CKRDSEALYFQFGIKLHNVVDSQ 137


>gi|319404161|emb|CBI77754.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 383

 Score = 41.6 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 75/213 (35%), Gaps = 33/213 (15%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I NT D++  +  L      +          F  +   I +++ D        +  + 
Sbjct: 2   ELITNTIDLEISIAALRKSNFVTVDTEFIRKTTFWPQLCLIQVASPD--------ITILI 53

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFE---NEHFLKIGHNIKYDKLVLHRYG-ISMR 484
             ++   +                L+ FF+   ++  +K+ H  + D  +++  G I   
Sbjct: 54  DPMAQDIN----------------LQPFFDLMIDKKVVKVFHAARQDIEIIYHLGGIIPS 97

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D  +   +   G S      I Q+   +   +   SR +      +S+ Q+  +A+ 
Sbjct: 98  PLFDTQVAGSICGFGDSI-SYDQIVQRCTGHHLDKS--SRFTDWSCRPLSEKQLL-YAVS 153

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           +   +  ++L L+ +L  +K  H     +  ++
Sbjct: 154 DVTYLRDVYLALKKQLEEKKRTHWMHD-EMALL 185


>gi|182417780|ref|ZP_02949096.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237667945|ref|ZP_04527929.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378504|gb|EDT76035.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237656293|gb|EEP53849.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 975

 Score = 41.6 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 11/151 (7%)

Query: 392 FKIITDTMDAFHSKPIAIA--------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
             I T  +D   S+ I I         I+T +       +V     +L    S++     
Sbjct: 15  LDIETTGLDETSSEIIEIGAIKFKDNTITTFETLIRPRGRVPIGIYNLCTGLSKEELYSA 74

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSS 502
                +   L +F E+     I HN  ++K     +   ++    D M ++ +L+     
Sbjct: 75  PSLGNVRESLSQFLED--LPLICHNGNFEKKFFRYHLPQIKNTIMDSMELAAILEPYHKE 132

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
           +++ ++ +      + EI +    SI   K+
Sbjct: 133 YNLNALMKTVTDMNKNEIHRGLDDSINTLKV 163


>gi|317491812|ref|ZP_07950247.1| ribonuclease D [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920246|gb|EFV41570.1| ribonuclease D [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 63/206 (30%), Gaps = 27/206 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I  + D++Q  ++       +          ++ +   I +   +          T
Sbjct: 2   NYQLITTSSDLKQVCEQASRHAYIALDTEFVRTRTYYPQLGLIQLFDGE--------TLT 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG 485
           +   L +   Q                    +N    K+ H    D ++ LH +      
Sbjct: 54  LIDPLPITDWQP--------------FVALLKNPEVTKLLHACSEDLEVFLHEFQTLPTP 99

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +++        S   A++   +L     E+ KS   +  + +    +  E+A  +
Sbjct: 100 MIDTQILA-AFTGRALSCGFAAMVNDYLQV---ELDKSESRTDWLARPLTERQCEYAAAD 155

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER 571
              +L L   L  ++     L   + 
Sbjct: 156 VFYLLPLADKLIAEVAEAGWLDAAKD 181


>gi|299473136|emb|CBN78712.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1278

 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 18/185 (9%)

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
           L+     +F      + LS            L  E +  L   F + + +K+ H    D 
Sbjct: 340 LEHHSFRTFLGVVCLMQLSTREQDYIVDPLKLRGE-MGRLLPVFSDPNIVKVFHGSDSDV 398

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIP 529
           L L R  G+ +    D    +  L  G  S  +A + +K+  +      ++   R   +P
Sbjct: 399 LWLQRDLGLYLVNMFDTGQAARQL--GLPSFGLAHLLEKFCDFVPDKKHQLSDWRMRPLP 456

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL---DKPMIDVVSQMEIT 586
            D +         +E S   + +  +L      E  L  +E+    +K   +V+ +    
Sbjct: 457 ADMLLID------LERSGGDVAVKAVLDA--SREICLRRFEKPAFQEKGWSEVLKRQGGN 508

Query: 587 GIQID 591
           G+  D
Sbjct: 509 GVLDD 513


>gi|195155670|ref|XP_002018724.1| GL25951 [Drosophila persimilis]
 gi|194114877|gb|EDW36920.1| GL25951 [Drosophila persimilis]
          Length = 1238

 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 43/212 (20%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A +       I+ D D+      T      
Sbjct: 865  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATELTHGT--ITDDSDIWLFGGRTVYKNFF 919

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG-N 213
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 920  AQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTAMEILASFSTT 977

Query: 214  LENILINASRIKQKKRRENILEYAE--------------TARLS--RKL----------- 246
            L+    + +    +     ++ + +              +ARL+  +KL           
Sbjct: 978  LDA--SSPASSGNQSVLATLVRFRDWWQAHKSTSLPPGSSARLALRKKLKNIELHEGFPN 1035

Query: 247  ---VMLRTDVPITIPLEHLILEDCNGPRLISF 275
               V    D  +    +       +   +  F
Sbjct: 1036 MAVVEAYLDPKVDDNRDAFSWGSPDVESIREF 1067


>gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 1442

 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV-------- 433
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINENITNL 461

Query: 434 -HTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGISM--RGFE 487
            + +Q+        K  L  +K+ F N        I  +I +    L ++G+        
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFANHILVAHNGISFDINFINQRLLKWGLEPLENPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++S  ++  +S H + +I +K+      E+ 
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDEVA 554


>gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 921

 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 11/136 (8%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAIS-TLDQKDDTSFKVETIF-IDLSVH------TS 436
            +       + T  +D    + + + +    D K    F         L           
Sbjct: 1   MSRTFVVLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLD 60

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYV 495
                +     E+   +  F  NE    +GH++ +D   L R+ G       D + ++ +
Sbjct: 61  DADLAERPDWSEVRPAVTAFLGNE--PVVGHHVHFDLAFLERHAGYRATQAYDTVDLARL 118

Query: 496 LDSGRSSHDIASIAQK 511
           +  G  S+ +  +   
Sbjct: 119 VLPGLPSYRLELLCAH 134


>gi|91792982|ref|YP_562633.1| ribonuclease D [Shewanella denitrificans OS217]
 gi|91714984|gb|ABE54910.1| ribonuclease D [Shewanella denitrificans OS217]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           ++  I +   ++  V++ ++               ++++   I             K   
Sbjct: 3   AFEYISDDASLRALVEQYQSSPLLVLDTEFVRTRTYYARLGLI--------QAFDGKTLA 54

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
           +   +++              E LS   +     H  K+ H+   D  V   YG      
Sbjct: 55  LIDPVAI--------------EDLSPFWQLLTAPHITKLVHSCSEDLEVFAHYGHCQPAP 100

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  + + +   G      A + Q+ LS    EI K    +  + +       ++A  +
Sbjct: 101 LFDSQIAASLAGLG-HGLGYAKLVQECLSV---EIDKGESRTDWMKRPLTDAQLQYAAND 156

Query: 546 SNVILQLWLLLRPKLIVEK 564
              + +L+ LL  KL    
Sbjct: 157 VFYLYKLYPLLLEKLNANG 175


>gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 1442

 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV-------- 433
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINENITNL 461

Query: 434 -HTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGISM--RGFE 487
            + +Q+        K  L  +K+ F N        I  +I +    L ++G+        
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFANHILVAHNGISFDINFINQRLLKWGLEPLENPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++S  ++  +S H + +I +K+      E+ 
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDEVA 554


>gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
          Length = 1442

 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV-------- 433
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINENITNL 461

Query: 434 -HTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGISM--RGFE 487
            + +Q+        K  L  +K+ F N        I  +I +    L ++G+        
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFANHILVAHNGISFDINFINQRLLKWGLEPLENPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++S  ++  +S H + +I +K+      E+ 
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDEVA 554


>gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
 gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
          Length = 1468

 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVETIFIDLSVHTSQD 438
           L       F + T  + A ++  I IA S      + ++ D          D +   +  
Sbjct: 425 LHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQFDEFIDPGHPLSDFTTELTGI 484

Query: 439 STGKNTLTKEILSYLKKFFEN--EHFLKIGHNIKYDKLVLH----RYGISM--RGFEDIM 490
           +      +K IL  L++ F+N  +  + + HN  +D   ++    R+ + +  +   D +
Sbjct: 485 TDNHVRGSKPILQVLQE-FQNFCQGTVLVAHNATFDVGFMNANYERHNLPLITQPVIDTL 543

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
             +  L      H +  + +++
Sbjct: 544 EFARNLYPEYKRHGLGPLTKRF 565


>gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1]
 gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 20/148 (13%)

Query: 383 KLETIGSASFKIITDTMDAFH-SKPIAIAISTLDQK----------DDTSFKVETIFIDL 431
           ++++         T  +  +  ++ + IA   LD+              + K    F   
Sbjct: 6   EVKSYKFTVVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTLINPKKPIPFQAY 65

Query: 432 SVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MR 484
            +H   D   K+  T +E+L +  K+ EN   + + HN  +D         + G++  + 
Sbjct: 66  KIHKISDEMVKDAPTIEEVLPHFSKYVEN--TVFVAHNAPFDFKFIDYFYKKTGMNCPLI 123

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKW 512
              D + +S  +  G  S+ + S+ Q +
Sbjct: 124 AVIDTLKLSRRIIPGLKSYSLDSLIQHF 151


>gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 462

 Score = 41.6 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 23/144 (15%)

Query: 386 TIGSASF-KIITDTMDAFHSKPIAIAISTLDQ---KDDTSFKVETIFID--------LSV 433
                +F  + T    A   +   + I  +D+   +  +S       I         +S 
Sbjct: 6   AHPRLAFVDLETTGATAVIDRITEVGIVEVDEDGVRHWSSLVNPHRHIPEFIEGLTGISN 65

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRG-FED 488
               D+ G + L  EI   L      E  + + HN ++D   L       GI  R     
Sbjct: 66  AMVADAPGFDELAAEIHQRL------EGRIFLAHNARFDHGFLKNEFKRVGIDFRPTVLC 119

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + +S  L    + H++ ++A++ 
Sbjct: 120 TVKLSRKLYPEFAKHNLDTLAERH 143


>gi|298252714|ref|ZP_06976508.1| ribonuclease D [Gardnerella vaginalis 5-1]
 gi|297533078|gb|EFH71962.1| ribonuclease D [Gardnerella vaginalis 5-1]
          Length = 476

 Score = 41.6 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
               I H+   D       G+  R   D  + + +L  GR    ++S+ + +L  T   +
Sbjct: 91  DVPWIIHDSMQDLPGFFDIGLRPRALFDTEIAAKLL--GRKRFGLSSVTEYYLGLT---L 145

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            K   ++    +      + +A  +  ++++L  ++R +L  +  L   E 
Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRVELKKQGKLSWAEE 196


>gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 1442

 Score = 41.6 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV-------- 433
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINENITNL 461

Query: 434 -HTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGISM--RGFE 487
            + +Q+        K  L  +K+ F N        I  +I +    L ++G+        
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFANHILVAHNGISFDINFINQRLLKWGLEPLENPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++S  ++  +S H + +I +K+      E+ 
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDEVA 554


>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 876

 Score = 41.6 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 86/268 (32%), Gaps = 35/268 (13%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ------KDDTSFKVETIF 428
           +     + + E      F + +  +D    + I IA   L++      K +   K +   
Sbjct: 496 EKFSLLINEFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKSV 555

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL------HRYGI 481
            D              + ++    LK+F E ++  + +GHN++YD  +L         G 
Sbjct: 556 KDSYYVHGFSDEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERSNLGK 615

Query: 482 -SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
              + F D + +      G  ++ + ++++ + +          K     D + D     
Sbjct: 616 PKFKTFYDTLDIYRRFYPGNINYKLENLSKVYDT----------KHKPSHDAMDDIIATG 665

Query: 541 HAIENS------NVILQLWLLLRPKLIV-----EKLLHVYERLDKPMIDVVSQMEITGIQ 589
             +  +         ++   L+   L       +KL  +++  +      +    + G  
Sbjct: 666 ELLVRAINEKIRETSMERMALMSKHLKAFTAISKKLNELFKIAESKRPYELVACVMNGFN 725

Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLS 617
           I        + E    L  L     DL 
Sbjct: 726 IKSMYAGDENKEKLNRLRDLYALFRDLD 753


>gi|71020521|ref|XP_760491.1| hypothetical protein UM04344.1 [Ustilago maydis 521]
 gi|46100386|gb|EAK85619.1| hypothetical protein UM04344.1 [Ustilago maydis 521]
          Length = 699

 Score = 41.6 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226
            V ++  +    M+    L G   D    IPGIG KTA  LL+E+G++  IL   S+  +
Sbjct: 402 DVYER--LSRSLMLDFALLCG--TDFNRTIPGIGPKTALRLLKEHGSISTILRKESKKFR 457

Query: 227 KKRRENILEYAETARLSRKL 246
                +I EY    R +R +
Sbjct: 458 PPDGLSIREYETEIRHARMV 477


>gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
          Length = 861

 Score = 41.6 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 89/268 (33%), Gaps = 44/268 (16%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI---------------STLD 415
           I   +   + V  LE      + + +   D    + + IA                    
Sbjct: 476 IFEAEPYAKLVAGLEVGEVVVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFERFINP 535

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K   + ++   F D  +    +S       K +L   K+F  + + + +GHN+ YD  +
Sbjct: 536 GKSVGTSQLVHGFTDAYLAEHGESP------KVVLEAFKEF--SNNRIIVGHNVNYDISI 587

Query: 476 ----LHRYGI---SMRGFEDIMLMSYVLDSGRSSHDIASIAQKW-LSYTR-----KEILK 522
               L R+ +     +   D + +         +H +  +++ + +++T       +I+ 
Sbjct: 588 LSHELARHNLGEPQFKAVYDTLDIFRRFYPTLENHKLGFLSKYFPINHTPTHNAMDDIIA 647

Query: 523 SRKSSIP---IDKISDSQVQEHAIENSNV----ILQLWLLLRPKLIVEKLLHVYERLDKP 575
           + +  I     + +  +  +  AI         I      LR K+  +    +   +   
Sbjct: 648 TGQLLIYAVRENIVPTTTNRMVAINQYKAAFTTIASQMATLRRKMHTDNPTELLAYI-MN 706

Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEIS 603
            + V+   +  G     + ++ +   + 
Sbjct: 707 QMGVLDYYKSHGEMAKVEHIRDLYRIME 734


>gi|290982318|ref|XP_002673877.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
           gruberi]
 gi|284087464|gb|EFC41133.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
           gruberi]
          Length = 956

 Score = 41.6 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 99/288 (34%), Gaps = 27/288 (9%)

Query: 274 SFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333
           +F+ +LE +  I  +    +  +   + + +    +          +      +T++ SS
Sbjct: 248 AFVASLEKSMKIGSLDDDDEEMSGGTKKMGVTFEHSTLPPFPFRFGVGNGVGGETTRQSS 307

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
                 ++ S Q  +       + +S  P+ N   T I   +D+ +    LE   + +  
Sbjct: 308 PHPYLPELLSLQFMKSQTTPPEKAISYAPLENSPCTWISTVEDLHKLATILEGQDAFAID 367

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           +   +  +F      + IST                      S+D        ++ +  L
Sbjct: 368 LEQHSYRSFQGFVCLMQIST---------------------RSEDFLIDTLELRQHMHIL 406

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
              F +   +K+ H    D L L R + I      D       L        +A + + +
Sbjct: 407 NSSFTHPKIVKVMHGSDCDILWLQRDFAIYCVNLFDTGQACRTL--ALPGCSLAYLLKHY 464

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
                 +  K  + +    +   S++ ++A E+++ +L ++  LR  +
Sbjct: 465 CGI---DADKKYQLADWRVRPLPSEMVKYAREDTHYLLYIYDRLRQDI 509


>gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
 gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
          Length = 1443

 Score = 41.6 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 68/185 (36%), Gaps = 23/185 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           ++L       F + T  + A + K   I +S +  +D    +    FID     S+ +T 
Sbjct: 419 EELAHQTYVIFDVETTGLSAIYDKV--IELSAVKMQDGNVLERFDEFIDPGFPLSEQTTN 476

Query: 442 KNTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVL------HRYGISMRG 485
             ++T          +E+    K F +    +  GHN+ +D   +      H+ G     
Sbjct: 477 LTSITTEMVQGSKTEEEVFQMFKDFCK--GCIIAGHNVAFDMGFMNTGYERHQMGKIAEP 534

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
             D + ++  L      + + ++++K+   L +  +    S  +   + K        + 
Sbjct: 535 VIDTLPLARFLYPDMRGYRLNTLSKKFKVALEHHHRANYDSEATGHLLYKFLKDAEARYD 594

Query: 543 IENSN 547
           ++  +
Sbjct: 595 VKYVD 599


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score = 41.6 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 80/223 (35%), Gaps = 39/223 (17%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFI-DLSVHT---- 435
           Q+L+ + +  F I T  +     K I I A+  LD      F         +S  T    
Sbjct: 452 QELKGVPAVVFDIETTGLSPTEDKIIEIGAVKMLDGVVVDKFSEFVDPKIPISPATTKLT 511

Query: 436 --SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGI--SMRGFE 487
             + D      L   ++    +F  +   + +GHN+ +D   +     R GI        
Sbjct: 512 TITDDMVIGAPLIDAVVPKFVEFCGD--CVLVGHNVGFDISFIIENCRRLGIKKEFTCI- 568

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D M +S      ++ H + ++ +                     K+ + Q    AI ++ 
Sbjct: 569 DTMGLSRAFYPQQAKHSLEAVCKTL-------------------KVVNEQ-HHRAISDAE 608

Query: 548 VILQLWLLLRPKLIVEKLLHV--YERLDKPMIDVVSQMEITGI 588
              +++ + + KL  + +  +   + +++  I+ V ++    +
Sbjct: 609 CTAEIFKIFQEKLYEKGIYDLDAIKAIEELDIEAVKRLHSNHV 651


>gi|301754868|ref|XP_002913303.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
           [Ailuropoda melanoleuca]
          Length = 596

 Score = 41.6 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           LK   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 228 LKMVLEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 268


>gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1443

 Score = 41.6 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 68/185 (36%), Gaps = 23/185 (12%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
           ++L       F + T  + A + K   I +S +  +D    +    FID     S+ +T 
Sbjct: 419 EELAHQTYVIFDVETTGLSAIYDKV--IELSAVKMQDGNVLERFDEFIDPGFPLSEQTTN 476

Query: 442 KNTLT----------KEILSYLKKFFENEHFLKIGHNIKYDKLVL------HRYGISMRG 485
             ++T          +E+    K F +    +  GHN+ +D   +      H+ G     
Sbjct: 477 LTSITTEMVQGSKTEEEVFQMFKDFCK--GCIIAGHNVAFDMGFMNTGYERHQMGKIAEP 534

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
             D + ++  L      + + ++++K+   L +  +    S  +   + K        + 
Sbjct: 535 VIDTLPLARFLYPDMRGYRLNTLSKKFKVALEHHHRANYDSEATGHLLYKFLKDAEARYD 594

Query: 543 IENSN 547
           ++  +
Sbjct: 595 VKYVD 599


>gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
 gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
          Length = 1468

 Score = 41.6 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVETIFIDLSVHTSQD 438
           L       F + T  + A ++  I IA S      + ++ D          D +   +  
Sbjct: 425 LHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQFDEFIDPGHPLSDFTTELTGI 484

Query: 439 STGKNTLTKEILSYLKKFFEN--EHFLKIGHNIKYDKLVLH----RYGISM--RGFEDIM 490
           +      +K IL  L++ F+N  +  + + HN  +D   ++    R+ + +  +   D +
Sbjct: 485 TDNHVRGSKPILQVLQE-FQNFCQGTVLVAHNATFDVGFMNANYERHNLPLITQPVIDTL 543

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
             +  L      H +  + +++
Sbjct: 544 EFARNLYPEYKRHGLGPLTKRF 565


>gi|224006438|ref|XP_002292179.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
 gi|220971821|gb|EED90154.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 19/141 (13%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           +    +  GIP +E    EA+   A    +   +G    +++ D D+   V     +Y  
Sbjct: 21  ILELLELCGIPWVESPS-EAEAQCAALEELGLVDG----VVTEDSDIF--VFGGRKVYKN 73

Query: 158 VKEEK-----IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
              E+        +   K+  +   +M+ L  L G   D   G+ G+G      +LQ + 
Sbjct: 74  FFNEQQYVEAYYAKDAEKELALGKHQMIALAMLLG--GDYTDGVKGVGIVNGMEILQAFP 131

Query: 213 NLENILINASRIKQKKRRENI 233
             E+I  +      +K RE +
Sbjct: 132 IGEDIHASL-----QKFREWL 147


>gi|198476637|ref|XP_002132415.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
 gi|198137788|gb|EDY69817.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
          Length = 1236

 Score = 41.6 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 43/212 (20%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A +       I+ D D+      T      
Sbjct: 863  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATELTHGT--ITDDSDIWLFGGRTVYKNFF 917

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG-N 213
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 918  AQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTAMEILASFSTT 975

Query: 214  LENILINASRIKQKKRRENILEYAE--------------TARLS--RKL----------- 246
            L+    + +    +     ++ + +              +ARL+  +KL           
Sbjct: 976  LDA--SSPASSGNQSVLATLVRFRDWWQAHKSTSLPPGSSARLALRKKLKNIELHEGFPN 1033

Query: 247  ---VMLRTDVPITIPLEHLILEDCNGPRLISF 275
               V    D  +    +       +   +  F
Sbjct: 1034 MAVVEAYLDPKVDDNRDAFSWGSPDVESIREF 1065


>gi|229589686|ref|YP_002871805.1| excinuclease ABC subunit C [Pseudomonas fluorescens SBW25]
 gi|259710344|sp|C3K7T2|UVRC_PSEFS RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|229361552|emb|CAY48428.1| excinuclease uvrABC system protein C [Pseudomonas fluorescens
           SBW25]
          Length = 607

 Score = 41.6 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 25/163 (15%)

Query: 81  KANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE-KEGFA 134
           K    K+P++L       QL + R       +P         D I+      A  K GF 
Sbjct: 453 KDGEGKLPDILLVDGGKGQLSMARDVLNELAVP---------DLILLGVAKGATRKAGFE 503

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
              ++       L   +  L+    ++  D  H   ++ I   +    +         + 
Sbjct: 504 TLYLNDSAHEFTLKGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTSTLE 555

Query: 195 GIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILE 235
           G+ G+G      LL+ +G L+ +   +   I K     + + E
Sbjct: 556 GVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598


>gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
 gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
          Length = 388

 Score = 41.6 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 37/183 (20%)

Query: 388 GSASF-KIITDTMDAFHSKPIAIAISTLDQKDDTSF--------KVETIFIDLSVHTSQD 438
           G  +F  + T    A   +   I +  +  +  +++         +      L+  + + 
Sbjct: 13  GPLAFVDLETTGGSAADHRITEIGVVEVGPQGVSTWTSLIDPQQPIPAFIQQLTGISDEM 72

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
             G  T +        +    E  L I HN  +D+  L     R G +        + +S
Sbjct: 73  VRGAPTFSSIAAELFARL---EGRLFIAHNASFDRGFLRAEFERAGFAFNPDMLCTVRLS 129

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    S H + ++ ++              + +P         +  A+ +++++ Q W
Sbjct: 130 RALFPRESRHGLDALIERH-------------ALVP-------NARHRALADADLVWQFW 169

Query: 554 LLL 556
             L
Sbjct: 170 QRL 172


>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL S4-171]
          Length = 1444

 Score = 41.6 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           L+      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LKDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + GI        
Sbjct: 481 GITDDMVKGSDPIDVVLKRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLGWKLIKDAK 592


>gi|299755113|ref|XP_001828437.2| hypothetical protein CC1G_04408 [Coprinopsis cinerea okayama7#130]
 gi|298411075|gb|EAU93429.2| hypothetical protein CC1G_04408 [Coprinopsis cinerea okayama7#130]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 87/234 (37%), Gaps = 16/234 (6%)

Query: 329 SQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG 388
           S  S++  +T+ I++   P       ++KL   P    +Y    + +++      + T  
Sbjct: 79  SAPSTMDSETAAIDASDPPPIPLASHIEKLPPRPAPTQAY----SWRELSPNAVVIYTRD 134

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
            A        +      P+   +           +     + L+    +           
Sbjct: 135 PAQADRELSKLKP---GPLGFDLEWKPNYVKGGKENRVALVQLA--NDEMILLIQVSAMH 189

Query: 449 ILSY-LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDS----GRSS 502
            L Y L +  E+  ++K G  I+ D     + +  ++R   D+ L++  +D+    G+ +
Sbjct: 190 ALPYKLTEILEDPSYIKAGVGIQGDALKFFNDWMANVRSVVDLSLLARSVDNARWKGKYN 249

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
           H I  +A+    Y  + + K +      +KI + + Q +A  +++    L+  L
Sbjct: 250 HPIG-LARLVEVYHYRLLEKGKIRRTNWEKILNLEEQSYAANDAHAGYTLYRHL 302


>gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
 gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
          Length = 248

 Score = 41.6 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 60/187 (32%), Gaps = 34/187 (18%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
             +++++  ++    F   T  ++    + I I    L  +  T                
Sbjct: 5   YSEYLRRGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVH 64

Query: 437 QDSTGKNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYG---I 481
            D+   + ++ E L         L +F E  +    + HN  +D       L R     I
Sbjct: 65  PDALAVHGISNEQLLDKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEI 124

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKW------------------LSYTRKEILKS 523
           +     D + ++         + + ++ +++                  L+    E++  
Sbjct: 125 TSEHIVDTLALARRKHP-MGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIGG 183

Query: 524 RKSSIPI 530
           +++++ +
Sbjct: 184 KQTALGL 190


>gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
 gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
          Length = 281

 Score = 41.6 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 67/211 (31%), Gaps = 39/211 (18%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
              +   D+   +   +    A   + T        +   + +  +D+     +      
Sbjct: 25  HCCIAMTDLASLIHDADARPLAFVDLETTGGRPGLDRITEVGVIEVDRDGVRRWSTLVDP 84

Query: 429 -IDLSVHTSQ-----DSTGKNTLTKEILSY-LKKFFENEHFLKIGHNIKYDKLVLHRY-- 479
              +     Q     D+  +   T + L+  L +    +  L I HN ++D   L +   
Sbjct: 85  LQPIPPFVQQLTGITDAMVRGAPTFDALAAELARRL--DGKLFIAHNARFDHGFLKKAFE 142

Query: 480 --GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
             GI         + +S  L    S H + ++AQ+                     +  S
Sbjct: 143 QIGIRFDPDVLCTVRLSRALFPRESRHGLDALAQR---------------------LDLS 181

Query: 537 QVQEH-AIENSNVILQLWL---LLRPKLIVE 563
               H A+ +++++ Q W     L P+  +E
Sbjct: 182 ACGRHRALADADLVWQFWQRVHALHPRPAIE 212


>gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Ruminococcaceae bacterium D16]
 gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Ruminococcaceae bacterium D16]
          Length = 1396

 Score = 41.6 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 69/208 (33%), Gaps = 23/208 (11%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD- 418
            Y IN+     +V+ +  Q + Q++       F I T  +D      I I  + L   + 
Sbjct: 347 AYFINDVDDRVVVHGQPCQDFSQEI-----VCFDIETTGLDKRREVIIEIGAAVLKNGEV 401

Query: 419 ----DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDK 473
               +T      I     +H +  +             L+ F +         HN ++D 
Sbjct: 402 TETFNTFVAPGRILSPEIIHLTGITDEMLVGAPSQEEALRAFLDFVGDRPLAAHNAEFDM 461

Query: 474 LVL----HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS------YTRKEILK 522
             +     +YGI       D ++++  L      + +  +A+ +L       +   +   
Sbjct: 462 GFISTGCRKYGIPFTNPSIDSLILAQNLLPELGKYKLDIVAE-YLQLPAFNHHRASDDAA 520

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVIL 550
           +    +P        +  H +E+ N  +
Sbjct: 521 TVAYMLPPFFEKLEAMGVHRLEDINAAM 548


>gi|229073435|ref|ZP_04206571.1| DNA polymerase I [Bacillus cereus F65185]
 gi|228709742|gb|EEL61780.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 134

 Score = 41.6 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
           Y Q ELR LA + +   L + F+  LD+H  +  +I G
Sbjct: 6   YIQQELRWLAIVTQEPVLIEAFKKGLDVHSHITCQIKG 43


>gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909]
 gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae A909]
          Length = 1468

 Score = 41.6 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVETIFIDLSVHTSQD 438
           L       F + T  + A ++  I IA S      + ++ D          D +   +  
Sbjct: 425 LHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQFDEFIDPGHPLSDFTTELTGI 484

Query: 439 STGKNTLTKEILSYLKKFFEN--EHFLKIGHNIKYDKLVLH----RYGISM--RGFEDIM 490
           +      +K IL  L++ F+N  +  + + HN  +D   ++    R+ + +  +   D +
Sbjct: 485 TDNHVRGSKPILQVLQE-FQNFCQGTVLVAHNATFDVGFMNANYERHNLPLITQPVIDTL 543

Query: 491 LMSYVLDSGRSSHDIASIAQKW 512
             +  L      H +  + +++
Sbjct: 544 EFARNLYPEYKRHGLGPLTKRF 565


>gi|281338215|gb|EFB13799.1| hypothetical protein PANDA_001056 [Ailuropoda melanoleuca]
          Length = 500

 Score = 41.6 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           LK   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 133 LKMVLEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 173


>gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
 gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
          Length = 862

 Score = 41.6 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 103/279 (36%), Gaps = 29/279 (10%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH 434
                 + + +      F + +  +D    + I IA   +++    + K E      +  
Sbjct: 483 DKYSLLIDEFQKDNIIVFDVESTGVDVTEDEIIQIAAIKVNKNGQVTEKFERFLK--NNK 540

Query: 435 TSQDSTGKNTLTKEILSY--------LKKFFE-NEHFLKIGHNIKYDKLV----LHRYGI 481
           + ++S   +  + E L          LK+F + +E  + +GHN++YD  +    L R G+
Sbjct: 541 SVKNSEHVHGFSDEFLKKNGEDKNTVLKEFVKFSEDSVIVGHNVQYDINILTSELQRAGL 600

Query: 482 ---SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKI 533
                + F D + +         +H + +++  +      S+   + +++ K  I +  I
Sbjct: 601 GEPKFKAFYDTLDIYRRFHPNLRNHKLETLSHIFETENKPSHDAMDDIQATK-DILVRAI 659

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
            D  +   ++E    + +         I +KL ++++  +      +    + G  +   
Sbjct: 660 KDD-IVPTSMERIACMSKYLKAFNN--IADKLNNLFKEAEGSRPHDIVNKIVNGFSLKTL 716

Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632
                  E  + L      + +L  +  N +S   L DI
Sbjct: 717 YTGDEGKEKIERLRDFYVLLRELDNK--NKNSRDSLLDI 753


>gi|63098616|gb|AAY32559.1| single strand DNA repair-like protein [Triticum monococcum]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 13/135 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                +  G+P +  +G EA+            EG     I++D D   L    T +   
Sbjct: 133 CVELLKNLGMPVLWAKG-EAE----ALCAQLNNEGEVDACITSDSDAF-LFGAKTVIKVM 186

Query: 158 VKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212
                   E  +I  +    G+  ++MV +  L G   D + G+PG G +TA   ++ + 
Sbjct: 187 RSNCKEPFECYNIVDIESGIGLKRKQMVAMALLIGSDHD-LHGVPGFGVETALRFVRLF- 244

Query: 213 NLENILINASRIKQK 227
           + + IL     I + 
Sbjct: 245 DEDQILDKLHEIGKG 259


>gi|85713183|ref|ZP_01044214.1| 3'-5' exonuclease [Idiomarina baltica OS145]
 gi|85693007|gb|EAQ30974.1| 3'-5' exonuclease [Idiomarina baltica OS145]
          Length = 217

 Score = 41.6 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 21/137 (15%)

Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDL 431
            +    +Q  +  +     +  I T  +D  + +   ++I+ +  K       E  + + 
Sbjct: 12  QSWTKHRQLQKPWQEHTYIAIDIETTGLDPINDQI--LSIAWVPIKPPMILIGEAQYHEF 69

Query: 432 SVHTSQD----------STGKNTLTKEILSYLKKFFENE--HFLKIGHNIKYDKLVLH-- 477
            V    D          +  + +   ++   LK   E++    + + H+   D   L   
Sbjct: 70  CVDPDVDLQQSPTIHGLTKAQLSSGGDVKKVLKD-LEDKLYGCVMVCHHRSLDWSYLRDN 128

Query: 478 ----RYGISMRGFEDIM 490
                      G  D +
Sbjct: 129 RLTENLHFEPLGVFDTL 145


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score = 41.6 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVET-IFIDLSVHTSQDS 439
             L T     F I T  +   ++K I +A +   + K+   F         +  H  Q +
Sbjct: 414 AALATAEYIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQLT 473

Query: 440 TGKNTLTKEILS---YLKKFFE-NEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
              + + K+       L++F +     + + HN ++D       L   G+        D 
Sbjct: 474 NINDEMVKDAPELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMPDVTNPVLDT 533

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + +++ K+
Sbjct: 534 LELARFLHPTMKNHRLNTLSAKY 556


>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL N1-067]
          Length = 1452

 Score = 41.6 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           L+      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 431 LKDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 488

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + GI        
Sbjct: 489 GITDDMVKGSDPIDVVLKRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVV 546

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 547 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLGWKLIKDAK 600


>gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9]
 gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus
           thermophilus LMD-9]
 gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03]
          Length = 1464

 Score = 41.6 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSV 433
           +L+      F + T  + A H+  I IA S + + +         D  + +     +L+ 
Sbjct: 420 ELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQFDEFIDPGYPLSAFTTELTG 479

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFE 487
            T     G   L + +L   ++F +    + + HN  +D   ++    R+ +    +   
Sbjct: 480 ITDNHVKGAKPLVQ-VLQEFQEFCK--GAVLVAHNATFDVGFMNANYERHQLPTISQPVI 536

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D +  +  L      H +  + +++
Sbjct: 537 DTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 1444

 Score = 41.6 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           L+      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LKDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + GI        
Sbjct: 481 GITDDMVKGSDPIDVVLKRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLGWKLIKDAK 592


>gi|283783345|ref|YP_003374099.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05]
 gi|283441638|gb|ADB14104.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05]
          Length = 476

 Score = 41.6 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
               I H+   D       G+      D  + + +L  GR    ++S+ + +L  T   +
Sbjct: 91  DVPWIIHDSMQDLPGFFNIGLRPLALFDTEIAAKLL--GRKRFGLSSVTEYYLGLT---L 145

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            K   ++    +      + +A  +  ++++L  ++R +L  +  L   E 
Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRVELKKQGKLSWAEE 196


>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 1433

 Score = 41.6 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +K+  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEKWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311]
 gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG
           18311]
          Length = 1464

 Score = 41.6 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSV 433
           +L+      F + T  + A H+  I IA S + + +         D  + +     +L+ 
Sbjct: 420 ELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQFDEFIDPGYPLSAFTTELTG 479

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFE 487
            T     G   L + +L   ++F +    + + HN  +D   ++    R+ +    +   
Sbjct: 480 ITDNHVKGAKPLVQ-VLQEFQEFCK--GAVLVAHNATFDVGFMNANYERHQLPTISQPVI 536

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D +  +  L      H +  + +++
Sbjct: 537 DTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066]
 gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus
           CNRZ1066]
          Length = 1464

 Score = 41.6 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSV 433
           +L+      F + T  + A H+  I IA S + + +         D  + +     +L+ 
Sbjct: 420 ELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQFDEFIDPGYPLSAFTTELTG 479

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFE 487
            T     G   L + +L   ++F +    + + HN  +D   ++    R+ +    +   
Sbjct: 480 ITDNHVKGAKPLVQ-VLQEFQEFCK--GAVLVAHNATFDVGFMNANYERHQLPTISQPVI 536

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D +  +  L      H +  + +++
Sbjct: 537 DTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|238751610|ref|ZP_04613100.1| Ribonuclease D [Yersinia rohdei ATCC 43380]
 gi|238710172|gb|EEQ02400.1| Ribonuclease D [Yersinia rohdei ATCC 43380]
          Length = 394

 Score = 41.6 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 62/205 (30%), Gaps = 29/205 (14%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           ++   +    +  +Y  I     +QQ  ++       +          ++ +   I +  
Sbjct: 10  KIDGYNDQENDVLNYQLITTDSALQQVCEQARKHAHVALDTEFVRTRTYYPQLGLIQLYD 69

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +Q         T +                         ++  ++ + +K  H    D 
Sbjct: 70  GEQLSLIDPLPITQWQP----------------------FRELIQDLNVVKYLHAGSEDL 107

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPID 531
            V    +        D  +++    SGRS S   A +  ++      E+ KS   +  I 
Sbjct: 108 EVFLNAFDQMPTPMIDTQVLA--AFSGRSLSCGFAMLVNEFEGV---ELDKSESRTDWIA 162

Query: 532 KISDSQVQEHAIENSNVILQLWLLL 556
           +    +  ++A  +   +L L   L
Sbjct: 163 RPLSEKQCDYAAADVFYLLPLAAKL 187


>gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
 gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
          Length = 248

 Score = 41.6 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 60/187 (32%), Gaps = 34/187 (18%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
             +++++  ++    F   T  ++    + I I    L  +  T                
Sbjct: 5   YSEYLRRGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVH 64

Query: 437 QDSTGKNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYG---I 481
            D+   + ++ E L         L +F E  +    + HN  +D       L R     I
Sbjct: 65  PDALAVHGISNEQLLDKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEI 124

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKW------------------LSYTRKEILKS 523
           +     D + ++         + + ++ +++                  L+    E++  
Sbjct: 125 TSEHIVDTLALARRKHP-MGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIGG 183

Query: 524 RKSSIPI 530
           +++++ +
Sbjct: 184 KQTALGL 190


>gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
 gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 18/137 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I I    L+ +  T   +             D+   + +T + L+
Sbjct: 6   FDTETTGLDNKVDRIIEIGCVELENQFPTGRSLHLFINPDGRAVHPDALAVHGITDQFLA 65

Query: 452 YLKKFFEN---------EHFLKIGHNIKYDKLVLHRYG--ISMRGFE-----DIMLMSYV 495
             K  F +         +    + HN  +D   L+     I +   +     D + ++  
Sbjct: 66  D-KPVFADLADEIAAFFDGAHYVAHNANFDMGFLNAEFDRIGLPPVDPGLVIDTLALARR 124

Query: 496 LDSGRSSHDIASIAQKW 512
                  + + ++ +++
Sbjct: 125 RHP-MGPNSLDALCRRY 140


>gi|78048167|ref|YP_364342.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78036597|emb|CAJ24288.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 363

 Score = 41.6 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 8/132 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           + LK++      +K+ H+   D +      G   R   D  + +       +        
Sbjct: 62  AALKEWLTAPDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAA-----ALAGVGGGMGY 116

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEK-LLH 567
           QK +      +L   ++     +   S  Q E+A ++   +  +   L  +L  +  L  
Sbjct: 117 QKLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEW 176

Query: 568 VYERLDKPMIDV 579
           + E  ++ +  V
Sbjct: 177 LAEDAERLLATV 188


>gi|296214138|ref|XP_002753640.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
           [Callithrix jacchus]
          Length = 572

 Score = 41.6 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LKI H+ ++    L H+YGI +    D  + 
Sbjct: 202 LQMILEDKRILKIIHDCRWLSDCLSHQYGILLNNVFDTQVA 242


>gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
 gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
          Length = 235

 Score = 41.6 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 39/209 (18%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I I    +  +  T  +         V  S ++   + LT E L 
Sbjct: 6   FDTETTGLDKEKDRIIEIGCVEMIDRYLTGKRFHVYLNPQGVVISDEAVAIHGLTNERLK 65

Query: 452 YLKKF--FENE------HFLKIGHNIKYDKLVL-HRYG------ISMRGFEDIMLMSY-- 494
             K F    +E          + HN  +D   L    G      IS+    D + M+   
Sbjct: 66  NEKSFSDIADELLEFISGATMVAHNASFDIGFLNAELGRVNKPLISVDNILDTLAMARRK 125

Query: 495 ---------VL-------DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
                    VL       +S R  H  A +  + L+    E++  ++  +  +      V
Sbjct: 126 FPMGPNSLDVLCKRFGIDNSHRVFHG-ALLDAEILADVYIELIGGKQGVLGFEN--SKSV 182

Query: 539 QEHAIENSNVILQLW---LLLRPKLIVEK 564
           ++ +  + N +L +      L P+L  ++
Sbjct: 183 EQDSQNDKNALLAVKVRPQPLSPRLSAQE 211


>gi|37523316|ref|NP_926693.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35214320|dbj|BAC91688.1| glr3747 [Gloeobacter violaceus PCC 7421]
          Length = 195

 Score = 41.6 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 66/203 (32%), Gaps = 29/203 (14%)

Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
           Y  +  T  + + V + +T    +    T             A             +  +
Sbjct: 8   YVLVTETAQLSELVDRWQTRKVLAVDTET-------------AHWHQVSTGKNRVSLLQV 54

Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG--ISMRG 485
           +   S   S        LT  +   ++ +      +K+ HN  YD   L   G     R 
Sbjct: 55  WDGTSEAVSVIDCFAVDLTAFVEKTMRNW----EIVKLIHNAPYD---LAYLGGAAQARS 107

Query: 486 FEDIMLMSYVLDSGRS----SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
               + M+  + + R      + + +++  +L     E+ K  ++S    +   ++  ++
Sbjct: 108 VVCTLQMARSIPTSRRGALERNSLKALSAHFLGI---ELDKRYQASNWALRPLTAEQLDY 164

Query: 542 AIENSNVILQLWLLLRPKLIVEK 564
           A  +  V   +W  +R  +  E 
Sbjct: 165 AALDPWVTFHIWEHMRALVEPEN 187


>gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 719

 Score = 41.6 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 42/206 (20%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAI-----------STLDQKDDTSFKVETIFIDLS 432
           L  +        T  +D  H + + I             +  +   D    +  +   + 
Sbjct: 15  LIALDVVVLDTETTGLDVRHDRIVQIGAVRMHGAEIDETAVFEVTVDPGIPIPEVASRIH 74

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRGFE- 487
                D  GK  L   ++  L  F  +     +GH+I +D  VL     R+G   +    
Sbjct: 75  GLADADVAGKPGLAA-VMPDLVAFIGDAVV--VGHSIHFDMAVLRHEAERHGFVWKEPRA 131

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-AIEN 545
            D+ LM+  LD       + S+A                       +  +    H A+ +
Sbjct: 132 LDVALMAAGLDRELVDTSLDSLAL---------------------GLGVTITGRHTALGD 170

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYER 571
           +    +++  L+PKL+V  +  + E 
Sbjct: 171 ALATARVYAALQPKLLVGGVRTLGET 196


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score = 41.6 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|205357935|ref|ZP_02574364.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328669|gb|EDZ15433.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|323130091|gb|ADX17521.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 390

 Score = 41.6 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 57/206 (27%), Gaps = 29/206 (14%)

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           E +   +    ++ +Y  I     +    + +    + +          ++ +   I + 
Sbjct: 3   EDIYFGANQREHDLNYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLF 62

Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472
                         +   L +                 S LK    +    K  H    D
Sbjct: 63  DGANV--------ALIDPLGISDW--------------SPLKAVLRDTGITKFLHAGSED 100

Query: 473 KLVLHR-YGISMRGFEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
             V    +G       D   L ++       S   AS+ +++       + KS   +  +
Sbjct: 101 LEVFLNAFGELPEPLIDTQILAAFCGRP--LSWGFASMVEEYTGVA---LDKSESRTDWL 155

Query: 531 DKISDSQVQEHAIENSNVILQLWLLL 556
            +    +  E+A  +   +L +   L
Sbjct: 156 ARPLSERQCEYAAADVWYLLPIAKKL 181


>gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 188

 Score = 41.6 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 23/144 (15%)

Query: 387 IGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSF--------KVETIFIDLSVHTSQ 437
           +   S  + T    A + +   I A+   D K    F        +V     +L+   S 
Sbjct: 9   MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTG-ISN 67

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYG--------ISMRGFED 488
           +      + ++IL     + EN+    +GHN K+D   L              S+R   D
Sbjct: 68  EMLEDQPVIEDILGDFIHWTENDRL--VGHNTKFDLSFLIANAERVFSDSTRFSVRPI-D 124

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            M +  +L      H +  + Q++
Sbjct: 125 TMHIDRLLFPSE-RHRLVDLIQRY 147


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score = 41.6 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1433

 Score = 41.6 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|324541911|gb|ADY49630.1| DNA polymerase I [Ascaris suum]
          Length = 97

 Score = 41.6 bits (96), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500
           G+     E    L+   E    L      K   ++  R G+ +   +D ML++Y+LD   
Sbjct: 14  GRVHRAPEPYKALRDLKEARGLL-----AKDLSVLALREGLGLPPGDDPMLLAYLLDPSN 68

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSS 527
           ++ +   +A+++     +E  +    S
Sbjct: 69  TTPE--GVARRYGGEWTEEAGERAALS 93


>gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
 gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
          Length = 461

 Score = 41.6 bits (96), Expect = 0.78,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 85/238 (35%), Gaps = 46/238 (19%)

Query: 382 QKLETIGSASF-------KIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFIDLSV 433
           ++L      SF        + T  +D  +++ I I A+   D     SFK       ++ 
Sbjct: 132 ERLIGKSVFSFPKNYVMVDVETTGLDPSNNEIIEIGALKITDGNVIDSFKTFV--KPINS 189

Query: 434 HTSQ---------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484
             S+         +        K +L   K F  + +   +G+N+ +D   LH       
Sbjct: 190 IPSKITSITGITNNMVADAPSIKTVLMEFKSFLSDNYI--VGYNVLFDIKFLHD------ 241

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEILKSR---KSSIPIDKISDSQVQ 539
                   SY     ++  +   ++  ++   R  ++  KS    K +  ID ++    +
Sbjct: 242 --------SYY----KNFGNCDWLSHDYIDVLRFCRKYFKSAPNHKLTTMIDYLNIDVKE 289

Query: 540 EH-AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596
            H A+ +    L+ +   + + + E +      ++K  ID V ++       D   L+
Sbjct: 290 HHRALADCYATLECYNNCKERALKENIRFELNSVEKLCIDTVKKILEEN-NFDSSYLR 346


>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1449

 Score = 41.6 bits (96), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 46/141 (32%), Gaps = 16/141 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ-- 437
           +K++      F I T  +++  ++ I I    +      D   ++      +  H ++  
Sbjct: 415 KKIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEIT 474

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FE 487
               +         E++     F  +   + + HN  +D   + R       I  +    
Sbjct: 475 SITDEQVANEPKINEVIGKFVDFVGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYKCSVI 532

Query: 488 DIMLMSYVLDSGRSSHDIASI 508
           D + M+  L      + +  +
Sbjct: 533 DTLQMARDLFPDLKKYGLGDL 553


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score = 41.6 bits (96), Expect = 0.79,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 97/307 (31%), Gaps = 29/307 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------ 433
           + L       F + T  + A ++  I +A   +   +  DT          LS       
Sbjct: 409 RHLLEEEYVVFDVETTGLSAVYNTIIELAAVKIKNGEIIDTYESFADPKEPLSATIIELT 468

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
             + D         E+L   ++F  N     + HN  +D   L     + G S       
Sbjct: 469 GITDDMVQGAPEPAEVLKQFREFAGNATL--VAHNASFDIGFLNVGYKKLGFSEVTNPVI 526

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D + +   L     +H + ++ +K+      E++           I D+Q   + +    
Sbjct: 527 DTLELGRFLYPELKNHRLNTLCKKF----DIELV------SHHRAIYDTQATAYLLWKMV 576

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EISKNL 606
                  ++    +   +        +P    +     TG++ +   L  +S  +     
Sbjct: 577 KDAAEKEIVYHDELNNHMGQGNFHRQRPFHCTLLVTSQTGLK-NLYQLVSMSHVDYYFRT 635

Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
             +  +  +   E   + S    G++ F  +   S  + +         +++ +    + 
Sbjct: 636 PRIPRSQLNKHREGLLIGSACDKGEV-FEGMMQKSADEVEKIAGFYDFLEIQPLGNYGHL 694

Query: 667 IIKNILE 673
           I + +++
Sbjct: 695 IERELVK 701


>gi|224009215|ref|XP_002293566.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970966|gb|EED89302.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 291

 Score = 41.6 bits (96), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 22/116 (18%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVH 434
            +      ++     +F      +    S + ++I  S                   S  
Sbjct: 39  MVNTLCSSIDKDAKIAFDCEGVNLSRLGSVEIVSICFS-------------------SSE 79

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDI 489
                 GK    K I+  +K+ FE     KI H+ + D   L H +GI +    D 
Sbjct: 80  VYLIDFGKEKCPK-IVEAVKELFECSTLTKIIHDCRMDFDALYHNHGIKLVNVHDT 134


>gi|39977361|ref|XP_370068.1| hypothetical protein MGG_06583 [Magnaporthe oryzae 70-15]
 gi|145015975|gb|EDK00465.1| hypothetical protein MGG_06583 [Magnaporthe oryzae 70-15]
          Length = 394

 Score = 41.6 bits (96), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLM 492
           LK+  E+    K+  +++ D   L   YGI ++G +D+ LM
Sbjct: 158 LKQILESADVPKVFFDVRDDASALFGIYGIRLQGVQDVQLM 198


>gi|74311884|ref|YP_310303.1| ribonuclease D [Shigella sonnei Ss046]
 gi|73855361|gb|AAZ88068.1| RNase D [Shigella sonnei Ss046]
          Length = 375

 Score = 41.6 bits (96), Expect = 0.79,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 33/221 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +   +          T
Sbjct: 2   NYQMITTDDALASLCEAVRVFPAIAQDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                        LK    +    K  H    D  V    +G   + 
Sbjct: 62  DWSP----------------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++   T   + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--MSWGFASMVEEYSGVT---LDKSESRTDWLARPLTERQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK----LLHVYERLDKPMIDVVS 581
           +   +L +   L  +          L     +     +VV+
Sbjct: 155 DVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195


>gi|15602571|ref|NP_245643.1| ribonuclease D [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720994|gb|AAK02790.1| Rnd [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 383

 Score = 41.2 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474
           D    +++T++  L +    D    + +    +     F     N   LK+ H    D  
Sbjct: 39  DTEFVRIKTLYPQLGLIQLYDGERVSLIDPTTIQDFSPFIALLANTAVLKVLHACSEDLE 98

Query: 475 VL-HRYGISMRGFEDIMLMS-YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532
           V  H +        D  +M+ ++     +   +A++ Q +      EI K    +  + +
Sbjct: 99  VFQHSFNQLPTPMLDTQIMANFLGFPNST--GLATLVQHYFQL---EIDKGASRTDWLAR 153

Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
                   +A  +   +L L+  ++  L  
Sbjct: 154 PLSDNQLIYAAADVWYLLPLYQRMQEALAQ 183


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score = 41.2 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 66/199 (33%), Gaps = 32/199 (16%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET---IFIDLSVHTSQDS 439
           +++     SF I T  +    ++ I      +        K +        +   T   +
Sbjct: 420 EIKGQEYVSFDIETTGLCPRFAEIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTENLT 479

Query: 440 TGKNTLTK----EILSYLKKFFENEHFLK-IGHNIKYDKLVL----HRYGISMRGFE--D 488
              N + +    E+   L+K + + +    + HN ++D   L     +  I        D
Sbjct: 480 GITNAMIEKSGLELKEALQKIYNDLNGKIALAHNARFDFNFLKEKFRQAKIEFPNVTVID 539

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            +++S ++      H +  +A +                  +    D  V      ++ V
Sbjct: 540 TLIVSRIVFPQNKKHKLEDVATR------------------VGVEYDPTVAHRGDYDAKV 581

Query: 549 ILQLWLLLRPKLIVEKLLH 567
           + ++W+ L  +L  + +L 
Sbjct: 582 LAEVWVALMDELGKKGILT 600


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score = 41.2 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + GI        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKVGIEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|326513036|dbj|BAK03425.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 490

 Score = 41.2 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-----HRYGIS-----MRGFEDIMLMS 493
               ++ + L++ FE    LK+G   K D + L        G       +  F D+  + 
Sbjct: 95  VPLADLWAPLRELFERPDVLKLGFRFKQDLVYLSATFTAALGCDSGFNRVEPFLDVTNVY 154

Query: 494 YVLDSG-------RSSHDIASIAQKWLSYTR-KEILKSRKSSIPIDKISDSQVQEHAIEN 545
           Y L          + +  +ASI ++ L+ +  KE+  S  S  P+ +       ++A  +
Sbjct: 155 YYLKGHDTQTRLPKETKSLASICEELLNVSLSKELQCSDWSCRPLSEGQI----QYAASD 210

Query: 546 SNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITG--IQIDQDLLKQVSAEI 602
           +  +L ++ L   K+ I EK     E  D+      S+   +G  I  D   L  +  + 
Sbjct: 211 AYYLLYIFDLFHQKVSIEEKCSSTAEASDEHFSQRASECSSSGNDICFD-GYLTSIITKY 269

Query: 603 SKNLLSLEENI 613
           S  +L  E ++
Sbjct: 270 SDRILLTESDM 280


>gi|221632364|ref|YP_002521585.1| exonuclease family [Thermomicrobium roseum DSM 5159]
 gi|221156848|gb|ACM05975.1| exonuclease family [Thermomicrobium roseum DSM 5159]
          Length = 982

 Score = 41.2 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 11/132 (8%)

Query: 389 SASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVETIFI---DLSVHTSQDSTGKNT 444
             +  I    MD    + I +A I   +++    F+          L+V +    T ++ 
Sbjct: 5   YVALDIEATGMDPERDEIIEVAAIKFREEEVLERFETLVQPRRPVPLAVASLTGLTMRDL 64

Query: 445 LT----KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG 499
                 ++I   L++F  N     +G +  YD  +L  +G+ +R    D   ++ +L   
Sbjct: 65  RRAPSFQQIAPRLRQFVRNY--PIVGQSPDYDLQMLSAHGLELRNPVYDTFRLATILLPD 122

Query: 500 RSSHDIASIAQK 511
             ++ +A IA +
Sbjct: 123 LPAYSLAGIAAR 134


>gi|18394573|ref|NP_564047.1| exonuclease, putative [Arabidopsis thaliana]
 gi|15215782|gb|AAK91436.1| At1g18090/T10F20_6 [Arabidopsis thaliana]
 gi|21360461|gb|AAM47346.1| At1g18090/T10F20_6 [Arabidopsis thaliana]
 gi|332191553|gb|AEE29674.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
          Length = 577

 Score = 41.2 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 12/139 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-- 155
           +    ++  +  I    +EAD  +A  + +  ++G    +I+ D DL+            
Sbjct: 136 LIQVLKSENVEFIVAP-YEADAQLAYLSSLELEQGGIAAVITEDSDLLAYGCKAVIFKMD 194

Query: 156 DTVKEEKIDIEHVIK-------KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
              K E++ +++V +             E    +  L G   D +P +PG+G   A   +
Sbjct: 195 RYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAG--CDFLPSVPGVGISRAHAFI 252

Query: 209 QEYGNLENILINASRIKQK 227
            +Y ++E +L      K K
Sbjct: 253 SKYQSVELVLSFLKTKKGK 271


>gi|30685678|ref|NP_849684.1| exonuclease, putative [Arabidopsis thaliana]
 gi|332191554|gb|AEE29675.1| 5'-3' exonuclease family protein [Arabidopsis thaliana]
          Length = 577

 Score = 41.2 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 12/139 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-- 155
           +    ++  +  I    +EAD  +A  + +  ++G    +I+ D DL+            
Sbjct: 136 LIQVLKSENVEFIVAP-YEADAQLAYLSSLELEQGGIAAVITEDSDLLAYGCKAVIFKMD 194

Query: 156 DTVKEEKIDIEHVIK-------KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
              K E++ +++V +             E    +  L G   D +P +PG+G   A   +
Sbjct: 195 RYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAG--CDFLPSVPGVGISRAHAFI 252

Query: 209 QEYGNLENILINASRIKQK 227
            +Y ++E +L      K K
Sbjct: 253 SKYQSVELVLSFLKTKKGK 271


>gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72]
          Length = 1462

 Score = 41.2 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 61/168 (36%), Gaps = 23/168 (13%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA--------- 410
           +  I  D    + N  D+      L       F + T  + A ++  I +A         
Sbjct: 400 EANIVEDRVPIVYNEVDMA-----LGDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNI 454

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470
           I+  D+  +    +     DL+  T +       L +++L   ++F ++   + + HN  
Sbjct: 455 IAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPL-EQVLKEFQEFCQD--SVLVAHNAT 511

Query: 471 YDKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           +D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 512 FDVGFMNVNYERHNLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|302346700|ref|YP_003814998.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845]
 gi|302150614|gb|ADK96875.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845]
          Length = 217

 Score = 41.2 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 71/190 (37%), Gaps = 28/190 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTM-DAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           ++N  + ++ V  L +         T  +      + +A+ +   D +    F++  I +
Sbjct: 29  VLNEAEAEKAVNYLLSKDIIGIDTETRPVFKKGQRRKVAL-LQACDHEVCFLFRLNLIGV 87

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
                                  +K+F E+    K+G ++  D L+LH R       F D
Sbjct: 88  P--------------------ECIKRFLEDTTVPKVGLSLGDDMLMLHQRLDFKPGYFID 127

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L  YV        D+ S+ + + +   + I K  + S   ++I   + + +A  ++  
Sbjct: 128 --LQDYV--KSLGIEDM-SLQKLYANVFHERITKREQLSNWENEILSDKQKIYASTDAWT 182

Query: 549 ILQLWLLLRP 558
            ++L+  L  
Sbjct: 183 CIKLYERLHE 192


>gi|9719724|gb|AAF97826.1|AC034107_9 Contains similarity to exonuclease ExoI from Xenopus laevis
           gb|AF134570 and contains XPG N-terminal PF|00752 and
           I-region PF|00867 domains. EST gb|AV565414 comes from
           this gene [Arabidopsis thaliana]
          Length = 567

 Score = 41.2 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 12/139 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-- 155
           +    ++  +  I    +EAD  +A  + +  ++G    +I+ D DL+            
Sbjct: 126 LIQVLKSENVEFIVAP-YEADAQLAYLSSLELEQGGIAAVITEDSDLLAYGCKAVIFKMD 184

Query: 156 DTVKEEKIDIEHVIK-------KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
              K E++ +++V +             E    +  L G   D +P +PG+G   A   +
Sbjct: 185 RYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAG--CDFLPSVPGVGISRAHAFI 242

Query: 209 QEYGNLENILINASRIKQK 227
            +Y ++E +L      K K
Sbjct: 243 SKYQSVELVLSFLKTKKGK 261


>gi|120554530|ref|YP_958881.1| 3'-5' exonuclease [Marinobacter aquaeolei VT8]
 gi|120324379|gb|ABM18694.1| 3'-5' exonuclease [Marinobacter aquaeolei VT8]
          Length = 383

 Score = 41.2 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 69/227 (30%), Gaps = 27/227 (11%)

Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411
           +         P   D+   +   + + QW+  L+     +     + +  F+  P  + +
Sbjct: 1   MTHTDPAVTIPAAPDTVRWLETPELLDQWLGGLDPGIPVALDTEFERVSTFYPIPGLVQL 60

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                 D   + V                  +    E     +    +E   K+ + +  
Sbjct: 61  ----GADGQFWLV------------------DPEVAEAAGSFRAMLADESRPKLLYAMSE 98

Query: 472 DKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530
           D  +  H   +   G  D+ + + +  +G S    A + +       + + KS   S  +
Sbjct: 99  DLELFRHWLNVEPAGVLDLQIGAALAGAGFSV-GYARLVETLFG---EALDKSATRSDWV 154

Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
            +      + +A+++   +  L+  +   L    L H      +   
Sbjct: 155 SRPLTPAQERYALDDIRFLEPLYGWVLANLRQRNLEHALADESRRFA 201


>gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 390

 Score = 41.2 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 81/241 (33%), Gaps = 38/241 (15%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHT-------- 435
                      T  ++    + I I + +  +Q+   +++ +   ID  V          
Sbjct: 20  MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQRIVKTWESKLRLIDGEVSAYAMQVNRL 79

Query: 436 --SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGI--SMRGFE 487
             S   + K    K +L  L++ F     L   HN+ +D   L     R+G+      F 
Sbjct: 80  DPSDMRSEKYPHPKAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARHGLPQWQGNFV 139

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D M +   L    S+  + S+A+    + R E+ +                   A+ ++ 
Sbjct: 140 DSMALGRALLPDLSA-SLESLAR----HFRVELTQ----------------HHDALADAV 178

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
               + L L        L  +   +++    +  + +   +   +++L +++    +   
Sbjct: 179 ATAHVLLHLLDLAQQRGLDPLNLLIERQGRPIRYRPDNARVVTQEEILAELAKIQQQRAA 238

Query: 608 S 608
           +
Sbjct: 239 A 239


>gi|32473842|ref|NP_866836.1| ribonuclease D [Rhodopirellula baltica SH 1]
 gi|32444378|emb|CAD74377.1| ribonuclease D [Rhodopirellula baltica SH 1]
          Length = 493

 Score = 41.2 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 32/137 (23%), Gaps = 18/137 (13%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I       ++ + +       F     + D +  +   + ++     
Sbjct: 82  QQDTGFAAVNYDSIETPSQFAEFCEAIADEPVIGFDTEFVSEDCYRPELCLVQVAAGKHL 141

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                             + D                   E    + I H  + +    +
Sbjct: 142 AVIDPYTVGDTKPFWDILTDDQI-----------------EPGSRVVIAHAAREEIRFAY 184

Query: 478 RY-GISMRGFEDIMLMS 493
           RY G  + G  D  L +
Sbjct: 185 RYSGRPIAGLFDTQLAA 201


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
          Length = 1421

 Score = 41.2 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 17/164 (10%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKD 418
           +  I  D +  I N  D               F I T  +     K   I A+  +D K 
Sbjct: 379 EAKILEDDFRIITNPYDSMNL------REFVVFDIETTGLSNATEKITEIGAVKIVDNKI 432

Query: 419 DTSFKVETIFI-DLSVHTSQDSTGKNTLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDK 473
              F         +    ++ ++  N + K+   I + L +F +       I HN  +D 
Sbjct: 433 VDEFNQLINPEIPIPEKITELTSITNEMVKDMPKIDAVLPEFLKFVGDCTLIAHNADFDM 492

Query: 474 LVLHRYGISM-----RGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
             + +  I +     R + D +  +  L+S   +H + ++ +K+
Sbjct: 493 GFIKKNCIDLGINPVRTYIDTLAFARALESHLKNHKLDTLTKKY 536


>gi|297844758|ref|XP_002890260.1| hypothetical protein ARALYDRAFT_889222 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336102|gb|EFH66519.1| hypothetical protein ARALYDRAFT_889222 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 577

 Score = 41.2 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 12/139 (8%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-- 155
           +    ++  +  I    +EAD  +A  + +  + G    +I+ D DL+            
Sbjct: 136 LIQVLKSENVEFIVAP-YEADAQLAYLSSLELEHGGIAAVITEDSDLLAYGCKAVIFKMD 194

Query: 156 DTVKEEKIDIEHVIK-------KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208
              K E++ +++V +             E    +  L G   D +P +PG+G   A   +
Sbjct: 195 RYGKGEELILDNVFQAVDQKPSFQNFDQELFTAMCVLAG--CDFLPSVPGVGISRAHAFI 252

Query: 209 QEYGNLENILINASRIKQK 227
            +Y ++E +L      K K
Sbjct: 253 SKYQSVERVLSFLKTKKGK 271


>gi|326444059|ref|ZP_08218793.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 285

 Score = 41.2 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 62/231 (26%), Gaps = 25/231 (10%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAI-------------STLDQKDDTSFKVETIFIDL 431
                  F + T   D   ++ +  A+                D       +   I    
Sbjct: 49  HGEPLVGFDLETTGTDPREARIVTAAVVEARAGEPVRRRTWLADPGVRIPAQASAIHGIT 108

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRGFE 487
           S   + +      +  E+ + L  ++       + +N  +D  +L     RYG  +    
Sbjct: 109 SERAAAEGRPAREVADEVAAELCGYWAR-GVPVVAYNAAFDLSLLAAEIRRYG--LPSLS 165

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L           + I     ++    R     S +  +P++   D+     A     
Sbjct: 166 D-RLGGRPTGPVIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPLEDAHDATADALAAVRVA 224

Query: 548 VILQLWL----LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             L L       L P  + E+ +  Y          + +       +D   
Sbjct: 225 GALALRHPSVAALDPARLHERQIVWYAEWAADFQAFLRRKGEADAVVDPHW 275


>gi|221113045|ref|XP_002168588.1| PREDICTED: similar to RIKEN cDNA 5830483C08 [Hydra magnipapillata]
          Length = 299

 Score = 41.2 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM-----QLVSPTTCLYDTVKE 160
           GIP I   G EA+ + A        +G     ++ D D        +    +        
Sbjct: 121 GIPYIRATG-EAEQMCAFLNSKKISDG----CLTNDGDFFLYGGKCIYRDFSADPKNPCV 175

Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218
                E +  K GI    M+ +  L G   D I G+ GIG    +  + E    EN+L
Sbjct: 176 STYTQEKIKDKIGITRHDMIGIALLCG--CDYIKGVSGIGKSLVSKFISEKSFKENLL 231


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score = 41.2 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  +   +   I +A   +      D           LS         
Sbjct: 448 LADATYVVFDVETTGLSTAYDTIIELAAVKIKDGHVIDKYESFANPHHPLSATTIELTGI 507

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDI 489
           + D        ++++     F  +   + + HN  +D   L     ++G+        D 
Sbjct: 508 TDDMVRHAPEVEQVIKEFHAFIGDG--IVVAHNASFDIGFLYTGYKKFGLEGTTHPVIDT 565

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++ +L     +H + ++ +K+
Sbjct: 566 LELARLLYPTMKNHRLNTLCKKF 588


>gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
 gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 63/219 (28%), Gaps = 47/219 (21%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET----IFIDLSVHTSQ------- 437
           +  F   T  ++      +    +     D  + KV         D+    S+       
Sbjct: 4   AVLFDTETTGLEPLGGDRVIEVAAIELWNDLPTGKVFHTLIDPERDIPAEASRVHGMTSA 63

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYG---ISMRGFEDIM 490
           D  GK    +     L+ F E+     + HN  +D   L     R G   +      D +
Sbjct: 64  DVAGKPKFAEIAAELLEFFAEDP---LVAHNAPFDFGFLDAEFARIGRAALDRARMIDTL 120

Query: 491 LMSY--------VLDSGRSSHDIASIAQ---------KWLSYTRKEILKSRKSSIPIDKI 533
            ++          LD+     DI   A+         K L+    E+   R+  + +   
Sbjct: 121 ALAKQRFPGMPNSLDALCRRFDIDLSARTTHNALLDCKLLAEVYVELTGGRQRGLDLAAE 180

Query: 534 SDSQVQEHAIE---------NSNVILQLWLLLRPKLIVE 563
           S  ++ E+  E          S   L        KL   
Sbjct: 181 STIRLVEYRSEGPRTPRPIVASAAELAAHEAFIEKLKEP 219


>gi|242398519|ref|YP_002993943.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
           739]
 gi|259645975|sp|C6A1U9|FEN_THESM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|242264912|gb|ACS89594.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
           739]
          Length = 340

 Score = 41.2 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 97/319 (30%), Gaps = 92/319 (28%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +D  +    A Y      R+ DG P         + ++G F   +  +    +       
Sbjct: 26  IDAFN----AIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAY---- 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLV---------------------- 98
              +FD     F+ +        R +  E  L +  +                       
Sbjct: 78  ---VFDGKPPEFKKKELEK----RAETREEALEKWEIALARGELEEAKKYAQRASKINEI 130

Query: 99  -----RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC 153
                +   +  GIP ++       +  A   Y+A K     +  S D D +   +P   
Sbjct: 131 LIEDAKKLLELMGIPWVQAP----SEGEAQAAYMASKGDVWAS-ASQDYDSLLFGTPKLV 185

Query: 154 LYDT---------------VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG-IP 197
              T               VK E I +E V+K+  +  EK++ L  L G   D  PG I 
Sbjct: 186 RNLTITGKRKLPGKDVYIEVKPELILLEDVLKELKLTREKLIELAILVG--TDYNPGGIK 243

Query: 198 GIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITI 257
           G+G K A  +++   +  +     S +     +E  L                   P T 
Sbjct: 244 GLGPKKALEIVKYSKDPLSKYQKTSEVDLYAIKEFFLN------------------PPTT 285

Query: 258 PLEHLILEDCNGPRLISFL 276
               L  +  +   +I FL
Sbjct: 286 NDYKLEWKLPDEESIIKFL 304


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
           reducens MI-1]
          Length = 1426

 Score = 41.2 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 92/312 (29%), Gaps = 52/312 (16%)

Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337
           A +      +V    D  A     + L    +    +    +  +          +++D 
Sbjct: 305 AYDINLGTAKVTNRDDKAADKRVELHLHTKMSSMDSVMSAVDAVKQAAAWGHPAVAITDH 364

Query: 338 --TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395
                        K    +L    +  + +D    +V+ K        L+          
Sbjct: 365 GVVQAFPEAYAAAKKAGIKLIYGVEGYLIDDGIATVVSMKHNVP----LQGTEHVIIDFE 420

Query: 396 TDTMDAFHSKPIAIA------------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           T        + I I               TL           T    ++    +D+    
Sbjct: 421 TTGFSPQTDEIIEIGAVKYLNGEEVGRFGTLVNPKKEIPFEVTKLTGITDEMVKDAPDG- 479

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI------SMRGFE-DIMLMSYVL 496
              KE L+ L +F      + + HN  +D   L R G+       +     D + ++ VL
Sbjct: 480 ---KEALTALSEFM--GEAVLVAHNASFDLSFL-RVGLRKYLKQEVTNPAIDTLGVARVL 533

Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
                +H + ++ +++                   KI  +     A+++++   +LW + 
Sbjct: 534 FPNLKNHKLNTLVKEF-------------------KIELTN-HHRAVDDASATAKLWQIF 573

Query: 557 RPKLIVEKLLHV 568
             KL  +++  V
Sbjct: 574 LRKLAEQEISDV 585


>gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798567|gb|EDN80987.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
           17982]
          Length = 414

 Score = 41.2 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 67/199 (33%), Gaps = 13/199 (6%)

Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435
           D  + + +      A      D   A  +     A   LD +    F          V  
Sbjct: 15  DNPELIAQPRGGTPAVIDTQKDLEAAARALSTGSAPIALDVERAQGF--RYGSDPYLVQI 72

Query: 436 SQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLM 492
            ++  G   +    L   S L+   E+   + + H+   D   L + G+      D  + 
Sbjct: 73  RREDVGTFLIDTHALPDLSVLQPGVED---VWLLHDCLQDLPNLRQVGLRPSTLFDTEIA 129

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           + ++  G     +A++ ++ L      ++K  ++S    +    +   +A  +  ++ +L
Sbjct: 130 ARLI--GLERFGLAAVVEQVLGLG---LVKDHQASDWSVRPLPKEWLRYAALDVELLTEL 184

Query: 553 WLLLRPKLIVEKLLHVYER 571
           +  L  +L         ++
Sbjct: 185 YYRLSKRLDEMGRWEWAQQ 203


>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 1407

 Score = 41.2 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 90/228 (39%), Gaps = 30/228 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFI-DLSVHTSQDSTGKN 443
                 F I T  +   + + I I A+   + K   +F+        +S   ++ +    
Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDE 450

Query: 444 TLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMRG-FEDIMLMSY 494
           ++ K+   I   L KF E   + + + HN  +D   +     ++ +++     D + +S 
Sbjct: 451 SMVKDAPSIEEILPKFLEFASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSR 510

Query: 495 VLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSS----IPIDKISDSQVQEHAIENSN 547
            L     ++ + ++A+     L +  + +  +  ++      ID++ +  V++  +++ N
Sbjct: 511 HLYKDLKNYKLDTLAEHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEK--VKDIN 568

Query: 548 VILQLWLLLRPKL----------IVEKLLHVYERLDKPMIDVVSQMEI 585
            IL+   +   KL            + L ++YE + K  ++   +   
Sbjct: 569 AILKESEVDIRKLPVYHVTILVKDQKGLRNLYEIISKSNLEYFHRTPR 616


>gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
 gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
          Length = 1365

 Score = 41.2 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 15/144 (10%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT----- 435
           ++ +E      F + T  +  +  +   I    ++    T    E +  ++ +       
Sbjct: 341 IKNIEEESFVVFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVIPEKIIEI 400

Query: 436 ---SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISMRGFE- 487
              + +        +E+L     F ++   + +G N  +D   +    HR G+       
Sbjct: 401 TGITNEMVKDCPTIEEVLPGFLDFCKD--SILVGQNTDFDVGFVRENCHRMGLDFNPIYL 458

Query: 488 DIMLMSYVLDSGRSSHDIASIAQK 511
           D + M+  L S      +  IA+K
Sbjct: 459 DTLPMARALFSDMKKFSLDKIARK 482


>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
 gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1407

 Score = 41.2 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 90/228 (39%), Gaps = 30/228 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFI-DLSVHTSQDSTGKN 443
                 F I T  +   + + I I A+   + K   +F+        +S   ++ +    
Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDE 450

Query: 444 TLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMRG-FEDIMLMSY 494
           ++ K+   I   L KF E   + + + HN  +D   +     ++ +++     D + +S 
Sbjct: 451 SMVKDAPSIEEILPKFLEFASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSR 510

Query: 495 VLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSS----IPIDKISDSQVQEHAIENSN 547
            L     ++ + ++A+     L +  + +  +  ++      ID++ +  V++  +++ N
Sbjct: 511 HLYKDLKNYKLDTLAEHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEK--VKDIN 568

Query: 548 VILQLWLLLRPKL----------IVEKLLHVYERLDKPMIDVVSQMEI 585
            IL+   +   KL            + L ++YE + K  ++   +   
Sbjct: 569 AILKESEVDIRKLPVYHVTILVKDQKGLRNLYEIISKSNLEYFHRTPR 616


>gi|49474343|ref|YP_032385.1| ribonuclease D [Bartonella quintana str. Toulouse]
 gi|49239847|emb|CAF26240.1| Ribonuclease D [Bartonella quintana str. Toulouse]
          Length = 404

 Score = 41.2 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 453 LKKFFE---NEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LK FF+   +E  +K+ H  + D  +++  G +      D  +   +   G S      I
Sbjct: 83  LKPFFDLMVDEKIVKVFHAARQDIEIIYHLGGVIPYPLFDTQIAGSICGFGDSI-SYDQI 141

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            Q+   +   +   SR +      +S+ Q+  +A+ +   +  ++LLL+ +L   K +H 
Sbjct: 142 VQRCTGHQLDKS--SRFTDWSCRPLSEKQLL-YALADVTYLRDVYLLLKKQLEKNKRMHW 198

Query: 569 YER 571
            + 
Sbjct: 199 MDD 201


>gi|297800892|ref|XP_002868330.1| hypothetical protein ARALYDRAFT_493524 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314166|gb|EFH44589.1| hypothetical protein ARALYDRAFT_493524 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 286

 Score = 41.2 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKL-VLHRYGISMRGFEDIMLMSYVLD---SGRSSHDIA 506
             L+   E+   +K+G  I  D + + H YG+S++  ED   +S + +    G     +A
Sbjct: 171 QRLQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSIKDVED---LSDLANQKIGGEKKWGLA 227

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIENSNVILQLWLLLR 557
           S+ +   +   KE+LK  +  +   ++     Q  ++A  ++     L+ +L+
Sbjct: 228 SLTE---TLVCKELLKPNRIRLGNWEVYPLSKQQLQYAATDAYASWHLYQVLK 277


>gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
           albus 8]
 gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
           albus 8]
          Length = 1498

 Score = 41.2 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 66/220 (30%), Gaps = 15/220 (6%)

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           N +    +A   ++         +  +++D        +   K    R        I   
Sbjct: 364 NMSMMDALAAPEKLVAKAAGWGHRALAITDHGVVQGFPEAGNKCADIRKSGQEFKIIYGC 423

Query: 367 SYTKIVNTKDIQQWVQKLE-TIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFK 423
              ++ N   I + V K E T     F + T   +    K I I    L   +  D    
Sbjct: 424 EAYEVNNDARIFKGVDKRELTDEIICFDLETTGTNPRDDKIIEIGAVKLRGLEIVDKFDM 483

Query: 424 VETIFIDLSVHTS------QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD----K 473
           +      L+   S       D     +  K  L    +F   E    + HN  +D    K
Sbjct: 484 LVDPGCPLTEFISNLTNITDDMLKGQSDIKTALEAFVEFC-GEKPCLVAHNAPFDTGFIK 542

Query: 474 LVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW 512
               R GI       D + MS ++      H +  +A+ +
Sbjct: 543 HACEREGIKFEFSSIDTVPMSQLMLPQLEKHKLNYVAEHF 582


>gi|260426693|ref|ZP_05780672.1| ribonuclease D [Citreicella sp. SE45]
 gi|260421185|gb|EEX14436.1| ribonuclease D [Citreicella sp. SE45]
          Length = 385

 Score = 41.2 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 65/195 (33%), Gaps = 24/195 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T+D+  + Q        +          ++SK   I ++   + D+ +  V+ + 
Sbjct: 2   KTITTTEDLAAFCQAAAKAPYVTVDTEFLRERTYYSKLCLIQLAFPGKGDENAVLVDPLV 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
             L                  L  L + F N   +K+ H  + D  +    +G+      
Sbjct: 62  DGLD-----------------LEPLLELFRNTAVVKVFHAARQDLEIFFIDHGVIPDPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENS 546
           D  + + V   G       ++ ++      K+ L          +   ++ Q ++A+ + 
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVKR----IAKQALDKSSRFTDWSRRPLTEAQKKYALADV 159

Query: 547 NVILQLWLLLRPKLI 561
             +  ++  L  +L 
Sbjct: 160 THLRVIYEYLAAELE 174


>gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 190

 Score = 41.2 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 23/144 (15%)

Query: 387 IGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSF--------KVETIFIDLSVHTSQ 437
           +   S  + T    A + +   I A+   D K    F        +V     +L+   S 
Sbjct: 11  MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTG-ISN 69

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYG--------ISMRGFED 488
           +      + ++IL     + EN+    +GHN K+D   L              S+R   D
Sbjct: 70  EMLEDQPVIEDILGDFIHWTENDRL--VGHNTKFDLSFLIANAERVFSDSTRFSVRPI-D 126

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            M +  +L      H +  + Q++
Sbjct: 127 TMHIDRLLFPSE-RHRLVDLIQRY 149


>gi|332161539|ref|YP_004298116.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318605521|emb|CBY27019.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325665769|gb|ADZ42413.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 373

 Score = 41.2 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +QQ  ++  T    +          ++ +   I +   ++         T
Sbjct: 2   NYQLITTDSALQQVCEQARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEKLSLIDPLPIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         ++  ++   +K  H    D  V    + +    
Sbjct: 62  QWQP----------------------FRELLQDVSVVKYLHAGSEDLEVFLNAFELMPTP 99

Query: 486 FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SGRS S   A +  +       E+ KS   +  I +    +  ++A  
Sbjct: 100 MIDTQVLA--AFSGRSLSCGFAMLVNELEGV---ELDKSESRTDWIARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L L   L
Sbjct: 155 DVFYLLPLASKL 166


>gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
 gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
          Length = 681

 Score = 41.2 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 17/165 (10%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TL 414
           +  I  D    + N  ++      L       F + T  + A ++  I +A S      +
Sbjct: 402 EANIVEDRVPIVYNEVEVD-----LSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNI 456

Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDK 473
             + D            +   +  +       K ++  LK+F E  +  + + HN  +D 
Sbjct: 457 IAEFDEFINPGHHLSAFTTELTGITDDHVKNAKPLVQVLKEFQEFCKDTVLVAHNATFDV 516

Query: 474 LVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
             ++    R+G+    +   D +  +  L      H +  + +++
Sbjct: 517 GFMNANYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|308234712|ref|ZP_07665449.1| ribonuclease D [Gardnerella vaginalis ATCC 14018]
 gi|311114520|ref|YP_003985741.1| hypothetical protein HMPREF0421_20636 [Gardnerella vaginalis ATCC
           14019]
 gi|310946014|gb|ADP38718.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 67/189 (35%), Gaps = 12/189 (6%)

Query: 383 KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           KL          + DT++A+  +   +A     L    + +        D  +   +   
Sbjct: 30  KLLKEPREGVPEVIDTLEAYKEYCNLLAAGSGPLAADAERASGFRYGHEDWLIQFKRKGA 89

Query: 441 GKNTLTKEILSYLK-KFFE-NEHF---LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L    L  L   + E NE       I H+   D       G+  R   D  + + +
Sbjct: 90  GIGLLDPIALGKLGVDWHEFNEAVGDAPWIIHDSMQDLPGFFDIGLRPRALFDTEIAAKL 149

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  GR    ++S+ + +L  T   + K   ++    +      + +A  +  ++++L  +
Sbjct: 150 L--GRKRFGLSSVTEYYLGLT---LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEV 204

Query: 556 LRPKLIVEK 564
           +  +L  + 
Sbjct: 205 MSGELKKQG 213


>gi|227495500|ref|ZP_03925816.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
 gi|226831047|gb|EEH63430.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
          Length = 402

 Score = 41.2 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           LS L +   N   + I H+   D   L   G+ +    D ML + +L  G     +A++ 
Sbjct: 79  LSILNEPLNNA--VWILHDADQDIASLRMCGLEIPELFDTMLAARLL--GFQRFGLAAVC 134

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           ++ L  T   + K+ +S     +        +A  +  ++  L+  +   L         
Sbjct: 135 EQILGVT---LDKNHQSDDWSTRPLPRPWLRYAALDVELLTDLYEKMSHSLFKANRWEWA 191

Query: 570 ER 571
           ++
Sbjct: 192 QQ 193


>gi|170100216|ref|XP_001881326.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644005|gb|EDR08256.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 340

 Score = 41.2 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 17/141 (12%)

Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIA-------EKEGFAV-----TIISTDKDLMQL 147
            A +A  IP +    +EAD  +A    +        E     V      ++  D     +
Sbjct: 136 QALRAENIPYVVAP-YEADAQLAYLERMGIVNGVITEDSDLLVFGCQNVLLKLDVVASTV 194

Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207
           +S +   + TV   + D   +    G    +   +  L+G   D +  IPG+G KTA  L
Sbjct: 195 ISISRKDFGTVTARRSDPNSISLV-GWSDVQFRAMAILSG--CDYLGSIPGVGLKTACFL 251

Query: 208 LQEYGNLENILINASRIKQKK 228
           L+++ ++E ++     ++ KK
Sbjct: 252 LRKWKSVEQVV-RVILLEGKK 271


>gi|108806500|ref|YP_650416.1| hypothetical protein YPA_0503 [Yersinia pestis Antiqua]
 gi|167400104|ref|ZP_02305622.1| exodeoxyribonuclease IX [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|108778413|gb|ABG12471.1| hypothetical protein YPA_0503 [Yersinia pestis Antiqua]
 gi|167050812|gb|EDR62220.1| exodeoxyribonuclease IX [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 51

 Score = 41.2 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 25/42 (59%)

Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           +  +K R+ + ++ + A   +++  L+TD+ ++  L+ L L+
Sbjct: 9   VTPEKWRKKLQQHQQMAFTCKQIATLKTDLLLSGNLQQLRLK 50


>gi|47227957|emb|CAF97586.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 176

 Score = 41.2 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEK 178
                  KEG    + S D D +   +         K++    +  +  ++++  I  ++
Sbjct: 7   ALCAWLVKEGTVDAVASEDMDTLPFGANILIRQFKSKKDGEVIEYSLTKLLERLQINHQE 66

Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223
            V L  L G   D    I G+G + A  L+Q++  +EN+L++ +R
Sbjct: 67  FVDLCILLG--CDYCEKICGLGPRRALRLIQKHRTIENVLLHINR 109


>gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 240

 Score = 41.2 bits (95), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 31/145 (21%)

Query: 392 FKIITDTMDAFHSK--------------PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
               T  +D                               +            +S    +
Sbjct: 20  LDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRMHGISGEFLK 79

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL-------VLHRYGI---SMRGFE 487
           D    +T+  + L ++           I HN  +D         +L R  I    +    
Sbjct: 80  DKPLFHTIADDFLEFI------ADSKLIIHNAPFDIKFLNHELSLLKRAEIKLLELANTI 133

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D ++M+  +  G S +++ ++ +++
Sbjct: 134 DTLVMARSMFPG-SKYNLDALCKRF 157


>gi|294657671|ref|XP_459977.2| DEHA2E15444p [Debaryomyces hansenii CBS767]
 gi|199432866|emb|CAG88226.2| DEHA2E15444p [Debaryomyces hansenii]
          Length = 678

 Score = 41.2 bits (95), Expect = 0.93,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           + +      +  I    +EAD  +     I   +G    I+S D DL+          +T
Sbjct: 133 IMVELDMRKVKYIVAP-YEADPQMVYLERIGLVDG----ILSEDSDLL------IFGCNT 181

Query: 158 VKEEKIDIEHVIKKW--------------GIPPEKMVCLQALTGDSIDNIPGIPGIGYKT 203
           +  +  D    I+                    E++  +  L+G   D   GIPGIG KT
Sbjct: 182 LITKLNDYGECIEICRDNFCNVKKIPFLSNYTQEQLRLVAMLSG--CDYTKGIPGIGLKT 239

Query: 204 AALLLQEYGNLENILINASRIKQK--------KRRENILEYAETAR--LSRKLVMLRT-- 251
           A  L++ + NLE +LI      +K          + N+    +     L++KL  L +  
Sbjct: 240 AFNLVKRFNNLEKVLIALRSDGKKPPVDFEDEVYKANLAFQFQKVFSPLTKKLETLNSYP 299

Query: 252 -DVPITIP-LEHLILEDCNGP 270
            D+ +    LE    +  +  
Sbjct: 300 VDLKLDFEILEACCGKTLDEE 320


>gi|189096244|pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
           Adolescentis
          Length = 440

 Score = 41.2 bits (95), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 70/196 (35%), Gaps = 12/196 (6%)

Query: 383 KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           KL          + DT+ AF  +   +A +  +L    + +        D  V   +D  
Sbjct: 8   KLLAEPREGVPNVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGA 67

Query: 441 GKNTLTKEILSYLKKFFEN-----EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L  + L+     + +        + I H+   D       G+  +   D  + + +
Sbjct: 68  GIGLLDPQALAAAGADWNDFNRAVGDAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARL 127

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  ++++L   
Sbjct: 128 L--GLKRFGLAAVTEHFLGLT---LAKEHSAADWSYRPLPRDWRNYAALDVELLIELETK 182

Query: 556 LRPKLIVEKLLHVYER 571
           +R +L  +  +   + 
Sbjct: 183 MRAELKRQGKMEWAQE 198


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score = 41.2 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score = 41.2 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 72/221 (32%), Gaps = 37/221 (16%)

Query: 375 KDIQQWVQ----KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK----DDTSFKVET 426
            D+++ V+    +        F I T       ++ I I    +++       +SF    
Sbjct: 468 DDMKELVENGAGQSLDHTCVVFDIETTGFSPLKNRIIEIGAVRVEEGRIVDKFSSFVNPD 527

Query: 427 IFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYG 480
           + I   +           L   +I   L +F E     + + HN  +D   +     + G
Sbjct: 528 VPIPFEIEKLTGINDNMVLDAPKIDRVLPEFLEFCRGAVMVAHNAGFDISFIKENARQQG 587

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
           +       D + ++ VL    +   + ++A+                     ++  +   
Sbjct: 588 LEFNPTVLDTVSLARVLLPNLNRFKLDTVAK---------------------ELKINLAN 626

Query: 540 EH-AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
            H A++++    ++++     L    +  + +  +   + V
Sbjct: 627 HHRAVDDAGATAEIFVRFIKMLKERDIFDLSQLNELSRMTV 667


>gi|156059756|ref|XP_001595801.1| hypothetical protein SS1G_03891 [Sclerotinia sclerotiorum 1980]
 gi|154701677|gb|EDO01416.1| hypothetical protein SS1G_03891 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 268

 Score = 41.2 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 19/127 (14%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLM--SYVLDSGRSSHDIASIA 509
           LK   E++   K+  +++ D   L+ + GI + G  D+ LM  +    S      +    
Sbjct: 101 LKSILESQLIPKVIFDVRNDSDALYSHFGIKLGGVIDLQLMELATRFYSRDFLCGLGKCM 160

Query: 510 QKWLSYTRKEI----------------LKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
           +  L  T +E+                 K     +  D+  D  + ++ I++  ++ +LW
Sbjct: 161 ENDLVQTPEELKVRGAIKQRGIEIFAPEKGGSYEVFNDRPLDPAIVDYCIQDVQLLPELW 220

Query: 554 LLLRPKL 560
            +   KL
Sbjct: 221 EVYNAKL 227


>gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
 gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
          Length = 1438

 Score = 41.2 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 96/287 (33%), Gaps = 43/287 (14%)

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL--SQYPIN 364
             +   GI   T+          Q  +++D  +  +  +        +++ +   +  + 
Sbjct: 318 KMSAMDGIGSITDYINRAAYWGHQAIAITDHGNVQSFPEAQMASIKNKIKMIYGVEMYMI 377

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF-- 422
           +  +T + N KDI      L+ +   SF + T  +              +    +     
Sbjct: 378 DPEFTVVFNEKDIS-----LKDLTFISFDLETTGLSVMDDDITEFGAVKIKNGQEIGRLQ 432

Query: 423 -------KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD--- 472
                  ++     +L+  T++D     T+ + I   L +FF ++    + HN  +D   
Sbjct: 433 SLIKPNKRISQKITNLTHITNEDVKDAPTIQEYIPKIL-EFFGDDVI--VAHNATFDVGF 489

Query: 473 -KLVLHRYGIS-MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
              +L R+G   ++    D + +++ L        + ++A+ +                 
Sbjct: 490 LNEILQRHGYEKLKNPAIDSLALAWKLLPQLKGFRLGNVARYY----------------- 532

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
                D      A  ++ V+  ++ ++   ++  +   + +    P 
Sbjct: 533 -RIAYDGDDAHRADYDAEVLAGVFNMMLHDMMQNQQYSLLDMNAMPC 578


>gi|209964842|ref|YP_002297757.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209958308|gb|ACI98944.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 385

 Score = 41.2 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 61/203 (30%), Gaps = 26/203 (12%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T D+  +V +L+     +          +  +   + ++  D+             
Sbjct: 3   LITTTADLAAFVTRLKGAEYVTVDTEFMREKTYWPQLCLVQVAGPDEA--------AAID 54

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFED 488
            L+                 L+ L +   +   LK+ H  + D  +     G       D
Sbjct: 55  PLAEGMD-------------LTPLFELLHDPGVLKVFHAARQDVEIFVHLTGAVPAPLFD 101

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + + V   G S     ++  K  S     I KS + +    +    +   +A+ +   
Sbjct: 102 TQIAAMVCGFGDSV-GYETLITKLTS---ARIDKSSRFTDWSQRPLTERQLSYALSDVTH 157

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           +   +  LR +L      H  + 
Sbjct: 158 LRPAYEKLRRRLAKTGREHWLDE 180


>gi|157129284|ref|XP_001655349.1| hypothetical protein AaeL_AAEL002475 [Aedes aegypti]
 gi|108882084|gb|EAT46309.1| conserved hypothetical protein [Aedes aegypti]
          Length = 939

 Score = 41.2 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKL-VLHRYGISMRGFEDIMLMSYVL---DSGRSSHDIASI 508
           +K+  E+E  +K+ H+ + D + + +++ I ++   D      VL   D G+  + + ++
Sbjct: 525 IKEVLESEKVIKVIHDCRNDSVNLFNQFQILLKNVFDTQSAHAVLQFQDQGKQVYKVKNV 584

Query: 509 AQKWLSYTRKEILKSRKSSI 528
           +   L       +   K  +
Sbjct: 585 SLNTLCEMYNATVNPMKDQL 604


>gi|119026007|ref|YP_909852.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765591|dbj|BAF39770.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 431

 Score = 41.2 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 70/196 (35%), Gaps = 12/196 (6%)

Query: 383 KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           KL          + DT+ AF  +   +A +  +L    + +        D  V   +D  
Sbjct: 6   KLLAEPREGVPNVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGA 65

Query: 441 GKNTLTKEILSYLKKFFEN-----EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L  + L+     + +        + I H+   D       G+  +   D  + + +
Sbjct: 66  GIGLLDPQALAAAGADWNDFNRAVGDAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARL 125

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  ++++L   
Sbjct: 126 L--GLKRFGLAAVTEHFLGLT---LAKEHSAADWSYRPLPRDWRNYAALDVELLIELETK 180

Query: 556 LRPKLIVEKLLHVYER 571
           +R +L  +  +   + 
Sbjct: 181 MRAELKRQGKMEWAQE 196


>gi|262375191|ref|ZP_06068425.1| 3'-5' exonuclease [Acinetobacter lwoffii SH145]
 gi|262310204|gb|EEY91333.1| 3'-5' exonuclease [Acinetobacter lwoffii SH145]
          Length = 219

 Score = 41.2 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETI--FIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
           A   +  + A+   D +   +FKV  +     L    + D      +   I  +LK  F 
Sbjct: 39  ALEQELKSCAVLGFDSESKPTFKVGEVSTGPHLIQLATLDKAYLFQMNDSIWDFLKPIFV 98

Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGF 486
           N   +K+G  +K D  +  + GI +   
Sbjct: 99  NRDQIKVGFGLKNDAHLFRKKGIELNSV 126


>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1510

 Score = 41.2 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 61/198 (30%), Gaps = 35/198 (17%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS--------Q 437
                 F I T       +K I I    +   +        I  ++ +            
Sbjct: 477 DDKYVVFDIETTGFSPEKNKIIEIGAVKVIGGEIVDRYSTFINPEVPIPFRIEELTSIRD 536

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR----YGISMRG-FEDIMLM 492
           D    +     IL    +F ++   + + HN  +D   + R     G+       D + +
Sbjct: 537 DMVITSPTVDVILPQFMEFCKD--CIMVAHNADFDMSFIKRNCALLGMECNPTIVDTVAL 594

Query: 493 SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552
           + VL    +   + ++A              +  +I +D          A++++    ++
Sbjct: 595 ARVLLPQLNRFKLDTVA--------------KALNISLDH------HHRAVDDAACTAEI 634

Query: 553 WLLLRPKLIVEKLLHVYE 570
           ++    KL    +  + E
Sbjct: 635 FVKFIEKLKDRGISSLDE 652


>gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
 gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
          Length = 233

 Score = 41.2 bits (95), Expect = 0.96,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 36/181 (19%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---------LSVHTSQDSTGK 442
           F   T  +++   + I I    L+    T   +               L+VH   D   K
Sbjct: 6   FDTETTGLESKLDRVIEIGGIELNNHFPTGRTLHIYINPEDRKVHPDALAVHGITDDFLK 65

Query: 443 NTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMRG---FEDIMLMSY 494
           +     E++  +++FFE      + HN  +D         R GI+        D + ++ 
Sbjct: 66  DKPKFAEVVDEIREFFEGAR--WVAHNATFDMGFINAEFARLGIAPVSSELVTDTLSLAR 123

Query: 495 --------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
                    LD+    + I +         +  + L+    E++  R++++     S  Q
Sbjct: 124 RKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQTALGFGSGSKQQ 183

Query: 538 V 538
            
Sbjct: 184 A 184


>gi|327537477|gb|EGF24200.1| ribonuclease D [Rhodopirellula baltica WH47]
          Length = 433

 Score = 41.2 bits (95), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 32/137 (23%), Gaps = 18/137 (13%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
                    +Y  I       ++ + +       F     + D +  +   + ++     
Sbjct: 22  QQDTGFAAVNYDSIETPSQFAEFCEAIADEPVIGFDTEFVSEDCYRPELCLVQVAAGKHL 81

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
                             + D                   E    + I H  + +    +
Sbjct: 82  AVIDPYTVGDTKPFWDILTDDQI-----------------EPGSRVVIAHAAREEIRFAY 124

Query: 478 RY-GISMRGFEDIMLMS 493
           RY G  + G  D  L +
Sbjct: 125 RYSGRPIAGLFDTQLAA 141


>gi|321465391|gb|EFX76392.1| hypothetical protein DAPPUDRAFT_55156 [Daphnia pulex]
          Length = 181

 Score = 41.2 bits (95), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 24/147 (16%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +  T+  +  ++ L +       +   +  ++      + IST                 
Sbjct: 43  VDTTEAFELLLRDLLSQMVIGVDLEHHSERSYRGITCLMQIST----------------- 85

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                  D         + L  L + F +   +KI      D + L R +GI +    D 
Sbjct: 86  ----DKTDYIVDTLQLWDHLQPLNEVFCDPKIVKIFQGADSDVIWLQRDFGIYVVNLFDT 141

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYT 516
              + +L  G     ++ + Q +    
Sbjct: 142 FQAATLL--GFEKKSLSFLLQHYCQVH 166


>gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 896

 Score = 41.2 bits (95), Expect = 0.97,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 63/192 (32%), Gaps = 28/192 (14%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS----FKVETIFIDLSV 433
            ++++  +      F   T  +D F    I IA   +   +         ++T    L  
Sbjct: 503 AEFLKAYDEEEMVVFDTETTGLDVFADDIIEIAAMKIKGGEIVGEPLDLYIKTDKPILPK 562

Query: 434 HTSQDST-----GKNTLTKEIL---SYLKKFFE-NEHFLKIGHNIKYDKLV----LHRY- 479
              +D+       +    +E++     L++F         +GHN  YD  +    L RY 
Sbjct: 563 LGDKDNPMYAIYHEKLSAEELITPQEALQRFLAYIGTRPILGHNASYDYNIIDNCLQRYC 622

Query: 480 GISMR----GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
             +++       D + +  +L     S+ + S+ + +      ++          D  + 
Sbjct: 623 NDTLKAHKNPCFDSLKLIRLLSPSLHSYKLESLLETF------QLTGKNSHQAIDDVGAT 676

Query: 536 SQVQEHAIENSN 547
             +     E + 
Sbjct: 677 VSLVRLCAEKAR 688


>gi|225629620|ref|ZP_03787627.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591525|gb|EEH12558.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 135

 Score = 41.2 bits (95), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 461 HFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
           +  KI H  ++D  ++  Y            + S ++ +   +H +  +  + L      
Sbjct: 1   NITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLELLDTK--- 57

Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
           + K ++SS   D+    + + +A  +   + ++   L   L  E    + ++ 
Sbjct: 58  LNKQQQSSDWGDENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 110


>gi|154488712|ref|ZP_02029561.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis
           L2-32]
 gi|154082849|gb|EDN81894.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis
           L2-32]
          Length = 431

 Score = 41.2 bits (95), Expect = 0.97,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 70/196 (35%), Gaps = 12/196 (6%)

Query: 383 KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           KL          + DT+ AF  +   +A +  +L    + +        D  V   +D  
Sbjct: 6   KLLAEPREGVPNVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGA 65

Query: 441 GKNTLTKEILSYLKKFFEN-----EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L  + L+     + +        + I H+   D       G+  +   D  + + +
Sbjct: 66  GIGLLDPQALAAAGADWNDFNRAVGDAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARL 125

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  ++++L   
Sbjct: 126 L--GLKRFGLAAVTEHFLGLT---LAKEHSAADWSYRPLPRDWRNYAALDVELLIELETK 180

Query: 556 LRPKLIVEKLLHVYER 571
           +R +L  +  +   + 
Sbjct: 181 MRAELKRQGKMEWAQE 196


>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 970

 Score = 41.2 bits (95), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|21231744|ref|NP_637661.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768130|ref|YP_242892.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004]
 gi|21113449|gb|AAM41585.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573462|gb|AAY48872.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004]
          Length = 362

 Score = 41.2 bits (95), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 8/127 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             LK +      +K+ H+   D +      G+  R   D  + +       +        
Sbjct: 61  DALKDWLIAPDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAA-----ALAGVGGGMGY 115

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKL-IVEKLLH 567
           QK +      +L   ++     +   S  Q E+A ++   +  +   L  KL   ++L  
Sbjct: 116 QKLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTAKLTAQDRLGW 175

Query: 568 VYERLDK 574
           + E  ++
Sbjct: 176 LAEDGER 182


>gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 204

 Score = 41.2 bits (95), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 11/129 (8%)

Query: 392 FKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           F + T  +D    +   IA            LD +   +   +     +++    +S  +
Sbjct: 8   FDLETTGLDPTKDQITEIAAIRTDLIREYGRLDVRITKNSGTKLTPEIINLTGINESMMR 67

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
             + +E+   L   F +   + + H+  +D   L RY +    F    ++S +++ G S+
Sbjct: 68  GGIPEELAIPLLACFMSGSIV-VAHHAPFDLSFLARYLVEPSSFVCTRVLSKLVEPGESA 126

Query: 503 HDIASIAQK 511
             +A++A++
Sbjct: 127 -SLAAVAER 134


>gi|148245889|gb|ABQ52906.1| DNA polymerase [Crocosphaera watsonii WH 0003]
          Length = 119

 Score = 41.2 bits (95), Expect = 0.99,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI       
Sbjct: 1   AKIVTDAPLDFEIENCGLKGFNFDAVKPILENLELKKFVKEINQLQEHFGGNI------- 53

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  +    +IDR  T + S F S S Q   +N  +  +K  L + Q +++  
Sbjct: 54  ------TLEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEKKESLIKPQIITEIE 103


>gi|238782530|ref|ZP_04626561.1| Ribonuclease D [Yersinia bercovieri ATCC 43970]
 gi|238716457|gb|EEQ08438.1| Ribonuclease D [Yersinia bercovieri ATCC 43970]
          Length = 395

 Score = 41.2 bits (95), Expect = 0.99,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 58/195 (29%), Gaps = 29/195 (14%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +  +Y  I     +QQ  ++       +          ++ +   I +   +Q       
Sbjct: 21  DVLNYQLITTNDALQQVCEQARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPL 80

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
             T +                         ++  ++   +K  H    D  V    +   
Sbjct: 81  PITEWQP----------------------FRELLQDLAVVKYLHAGSEDLEVFLNAFDRM 118

Query: 483 MRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
                D  +++    SGRS S   A +  ++      E+ KS   +  I +    +  ++
Sbjct: 119 PTPMIDTQVLA--AFSGRSLSCGFAMLVNEFEGV---ELDKSESRTDWIARPLSEKQCDY 173

Query: 542 AIENSNVILQLWLLL 556
           A  +   +L L   L
Sbjct: 174 AAADVFYLLPLAAKL 188


>gi|315604318|ref|ZP_07879384.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314024|gb|EFU62075.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 414

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 69/209 (33%), Gaps = 8/209 (3%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           + +T D +  + +      A     +   DA  +  +  A   LD +    F        
Sbjct: 11  VGDTDDPEV-IAQPRGGTPAIVDTPSGLDDAAKALALGRAPVALDVERAQGF--RYGSDP 67

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490
             V   ++  G   +    L  L         + + H+   D   L + G+      D  
Sbjct: 68  YLVQIRREDVGTFLIDTHALPDLSALAPGVDDVWLLHDCLQDLPNLRQVGLVPSSLFDTE 127

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           + + ++  G     +A++A++ L      +   + S   +  +    +  +A  +  ++ 
Sbjct: 128 IAARLV--GLERFGLAAVAEQVLGLGL--VKDHQASDWSLRPLPPEWL-RYAALDVELLT 182

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           +L+  L  +L         ++     + V
Sbjct: 183 ELYYRLSKRLDQMGRWEWAQQEFSHALSV 211


>gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
 gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
          Length = 1464

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSV 433
           +L+      F + T  + A H+  I IA S + + +         D    +     +L+ 
Sbjct: 420 ELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIIEQFDEFIDPGHPLSAFTTELTG 479

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFE 487
            T     G   L + +L   ++F +    + + HN  +D   ++    R+ +    +   
Sbjct: 480 ITDNHVKGAKPLVQ-VLQEFQEFCQ--GTVLVAHNATFDVGFMNANYERHQLPTISQPVI 536

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D +  +  L      H +  + +++
Sbjct: 537 DTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|168064381|ref|XP_001784141.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664341|gb|EDQ51065.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 435

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 11/117 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
                +  G+P +    +EA+ + A      +++G     ++ D D     +        
Sbjct: 125 CVELLELLGMPVLHA-AWEAEGLCAEL----DRDGLVDACVTADSDAFLHGARCVIKVLQ 179

Query: 158 VKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           +       E  D E +    G+  E M+ L  L G    N  G+ GIG   A  L++
Sbjct: 180 MDSKVPIIETYDAEDIKTILGLDREHMIALALLMG-CDYNKKGVVGIGCNRAIRLVR 235


>gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma
           urealyticum
 gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
          Length = 1442

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 15/152 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS--------- 432
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDNATYVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKPIQQINENVTNL 461

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGIS-MRGFE- 487
            + SQ+        K  L  +K+ F++        I  +I +    L ++G+  ++    
Sbjct: 462 TNISQEMVNNAIDEKTALLKIKEIFDDHILVAHNGINFDINFINQRLLKWGLEPLKNPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
           D +++S  ++  +S H + +I +K+      E
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDE 552


>gi|195473066|ref|XP_002088817.1| GE18773 [Drosophila yakuba]
 gi|194174918|gb|EDW88529.1| GE18773 [Drosophila yakuba]
          Length = 1237

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 84/304 (27%), Gaps = 38/304 (12%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 864  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATDLTHGT--ITDDSDIWLFGGRTVYKNFF 918

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ----- 209
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L      
Sbjct: 919  AQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGQ 976

Query: 210  -----------------EYGNLENILINASRIKQKKRRENILEYAETARL-----SRKLV 247
                             ++ +      + +       R ++ +  +   L     +  +V
Sbjct: 977  DANGPGVCNQSVLQTLTKFRDWWQAHKSTNLPPGSSARHSLRKKLKNIELHEGFPNVAVV 1036

Query: 248  MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307
                   I    +       +   +        F    ++           I    +  +
Sbjct: 1037 EAYLAPTIDDNRDAFSWGTPDVESIRE-FTRKSFGWTTSKTDDILMPVMKKINEKKIQGS 1095

Query: 308  TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
                        + +    K  Q +          + + P+K+   R  K +     + +
Sbjct: 1096 IRNYFTAKSALRVQQPHVSKRVQLAIDKMSGKIDKTPEKPKKVARTRRAKAAPPTDPDLA 1155

Query: 368  YTKI 371
            Y ++
Sbjct: 1156 YAEV 1159


>gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 619

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 19/140 (13%)

Query: 382 QKLETIGSASFKIITDTMDAFHSK-PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           +KL  +   +F   T  +        I +    + Q    S +     ID  +     S 
Sbjct: 423 EKLSDLTFVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDPGIPIPAQSM 482

Query: 441 GKNTLTKEILSYLKKFFE---------NEHFLKIGHNIKYDKLVLHRY----GISMR-GF 486
             + ++ +++   K                    GHN+ +D   LH      GI++R   
Sbjct: 483 AYHGISNDMVKG-KPPLAVVLPQFAAFAGASALAGHNVAFDLKFLHAAQGETGIALRQPV 541

Query: 487 EDIMLMSYVLDSGRSSHDIA 506
            D M+++ +LD G   +D++
Sbjct: 542 LDTMILAALLDPG---YDLS 558


>gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
 gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
          Length = 1464

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSV 433
           +L+      F + T  + A H+  I IA S + + +         D    +     +L+ 
Sbjct: 420 ELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIVEQFDEFIDPGHPLSAFTTELTG 479

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFE 487
            T     G   L + +L   ++F +    + + HN  +D   ++    R+ +    +   
Sbjct: 480 ITDNHVKGAKPLVQ-VLQEFQEFCQ--GTVLVAHNATFDVGFMNANYERHQLPTISQPVI 536

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D +  +  L      H +  + +++
Sbjct: 537 DTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|297696371|ref|XP_002825370.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
           [Pongo abelii]
          Length = 572

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 202 LQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 242


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           L       F + T  + A +   I + A+     +    F+        LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585]
 gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 70585]
          Length = 1463

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS--TLDQK 417
           +  I  D    + N  ++      L       F + T  + A ++  I +A S       
Sbjct: 401 EANIVEDRVPIVYNEVEMD-----LSEAIYVVFDVETTGLSAIYNDLIQVAASKMYKGNV 455

Query: 418 DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471
                +       LS  T++      D        +++L   ++F ++   + + HN  +
Sbjct: 456 IAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKD--TVLVAHNATF 513

Query: 472 DKLVLH----RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           D   ++    R+ +    +   D +  +  L      H +  + +++
Sbjct: 514 DVGFMNANYERHDLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1433

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|221044296|dbj|BAH13825.1| unnamed protein product [Homo sapiens]
          Length = 572

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 202 LQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 242


>gi|114656432|ref|XP_523055.2| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2
           [Pan troglodytes]
          Length = 572

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 202 LQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 242


>gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
 gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
          Length = 230

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 20/138 (14%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               T  +DA    + + I           + +   ++I+      Q++   + L+ E L
Sbjct: 6   LDTETTGLDALRGDRLVEIG-CVEMFNHMPTGQTYHVYINPERDMPQEAFAVHGLSTEFL 64

Query: 451 SYLKKFF---ENEHFLKIG------HNIKYDKLV-------LHRYGISMRGFEDIMLMSY 494
           +  K  F    +E    IG      HN  +D          L R  I      D +L++ 
Sbjct: 65  AD-KPLFAAVADEFLEFIGDAPLIIHNASFDIGFINMELDRLKRAAIPCERLVDTLLLAR 123

Query: 495 VLDSGRSSHDIASIAQKW 512
               G S+  +  +  ++
Sbjct: 124 RKHPGVSNR-LDDLCSRY 140


>gi|123983340|gb|ABM83411.1| exonuclease 3'-5' domain-like 1 [synthetic construct]
 gi|123998041|gb|ABM86622.1| exonuclease 3'-5' domain-like 1 [synthetic construct]
          Length = 475

 Score = 41.2 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 105 LQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 145


>gi|297296193|ref|XP_002804776.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2
           [Macaca mulatta]
          Length = 572

 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 202 LQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 242


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLIDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|195143871|ref|XP_002012920.1| GL23665 [Drosophila persimilis]
 gi|194101863|gb|EDW23906.1| GL23665 [Drosophila persimilis]
          Length = 903

 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 75/221 (33%), Gaps = 27/221 (12%)

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
            P    L+R   L   P        + + + + Q +++L      +  +   +   F   
Sbjct: 255 EPSAEQLQRQTPLLPAPPAATELMLVDSVEKLNQALEELRRAPHIAIDVEHHSYRTF--- 311

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
              + I+ L Q                   ++D    +   +E +  L     +   +KI
Sbjct: 312 ---MGITCLVQMST---------------RTKDYIFDSLALREEMHVLNLVLTDPKKVKI 353

Query: 466 GHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
            H    D   L R   + +    D    +  L+  R      S+A     Y   ++ KS 
Sbjct: 354 LHGADQDIEWLQRDLSLYVVNMFDTHRAAKALNMARL-----SLAFLLKHYVDLDVDKSL 408

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           + +    +    Q+ ++A ++++ ++ ++  +   ++  + 
Sbjct: 409 QLADWRMRPLPQQLIDYARQDTHYLIYVYERMTNDILQAEQ 449


>gi|270262203|ref|ZP_06190475.1| hypothetical protein SOD_b04110 [Serratia odorifera 4Rx13]
 gi|270044079|gb|EFA17171.1| hypothetical protein SOD_b04110 [Serratia odorifera 4Rx13]
          Length = 373

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 37/230 (16%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +QQ  ++       +          ++ +   I +   +Q          
Sbjct: 2   NYQLITTDAGLQQVCEQARNHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLS-------- 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-G 485
           +   L +   Q                     +   +K  H    D  V      ++   
Sbjct: 54  LIDPLPIKQWQP--------------FIDLLSDTQIVKFLHAGSEDLEVFLNAFKTLPTP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A++  +++     ++ KS   +  + +    +   +A  
Sbjct: 100 MVDTQILAAFTGRP--LSCGFATLVTEYMQV---DLDKSESRTDWLARPLTEKQCVYAAA 154

Query: 545 NSNVILQLWLLL--------RPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586
           +   +L +   L               + L + +R  + +   ++  EIT
Sbjct: 155 DVFYLLPMAQQLVQETEDAGWTAAAANECLLLCQRRSESLAPELAYREIT 204


>gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
 gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
          Length = 216

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 13/147 (8%)

Query: 379 QWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI--DLSVHT 435
            W+  +    +  +F   T  +D    + + I     D++   +     I     +    
Sbjct: 5   DWLAAVYDTAAFIAFDTETTGLDPAAGRIVEIGAVKFDRRGIAARYNVLINPEIPMPEEA 64

Query: 436 SQDSTGKNTLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYGISMRG-- 485
            + +   + + K+   I +    FF+     + + HN  +D       L R G S  G  
Sbjct: 65  GKVNGITDEMLKDKPLIAAVFPDFFDFIGTGVLVAHNAPFDINYINAELKRIGKSPLGNK 124

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKW 512
             D  + +  +  G SS+ +  +A ++
Sbjct: 125 VVDTRIFAKEVFPGLSSYALQDLAVQF 151


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 46/141 (32%), Gaps = 16/141 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ-- 437
           +K++      F I T  +++  ++ I I    +      D   ++      +  H ++  
Sbjct: 415 KKIDDEEFVIFDIETTGLNSHTNEIIEIGAVKIKSGRIVDRYSQLINPGRPIPYHITEIT 474

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FE 487
               +         E++     F  +   + + HN  +D   + R       I  +    
Sbjct: 475 SITDEQVANEPKINEVIGKFVDFVGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQCSVI 532

Query: 488 DIMLMSYVLDSGRSSHDIASI 508
           D + M+  L      + +  +
Sbjct: 533 DTLQMARDLFPDLKKYGLGDL 553


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
 gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
 gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINIGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|148245853|gb|ABQ52889.1| DNA polymerase [uncultured marine microorganism]
 gi|148245857|gb|ABQ52891.1| DNA polymerase [uncultured marine microorganism]
 gi|148245865|gb|ABQ52895.1| DNA polymerase [uncultured marine microorganism]
 gi|148245873|gb|ABQ52899.1| DNA polymerase [uncultured marine microorganism]
 gi|148245879|gb|ABQ52901.1| DNA polymerase [Crocosphaera watsonii WH 0003]
 gi|148245881|gb|ABQ52902.1| DNA polymerase [Crocosphaera watsonii WH 0005]
 gi|148245883|gb|ABQ52903.1| DNA polymerase [Crocosphaera watsonii WH 0005]
 gi|148245885|gb|ABQ52904.1| DNA polymerase [Crocosphaera watsonii WH 0005]
 gi|148245891|gb|ABQ52907.1| DNA polymerase [Crocosphaera watsonii WH 0003]
          Length = 119

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI       
Sbjct: 1   AKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQEHFGGNI------- 53

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  +    +IDR  T + S F S S Q   +N  +  +K  L + Q +++  
Sbjct: 54  ------TLEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEKKESLIKPQIITEIE 103


>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
 gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
 gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
 gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
 gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
 gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
 gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
 gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Ames]
 gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Sterne]
 gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
 gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
           str. CI]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|313569960|gb|AAB96723.2| Xpg (xeroderma pigmentosum group g) dna repair gene homolog protein
           1, partially confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 820

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 78/225 (34%), Gaps = 49/225 (21%)

Query: 79  DYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII 138
           +Y     K PE+       ++      GIP IE  G EA+        +   +G    ++
Sbjct: 457 NYSDEDDKTPELYRD----LQEFLTNAGIPWIESPG-EAEAQCVELERLGLVDG----VV 507

Query: 139 STDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG--------------IPPEKMVCLQA 184
           S D D+    +     +   K  ++      +++G              +  E  + +  
Sbjct: 508 SDDSDVWAFGAQHVYRHMFSKNRRV------QRYGEQTTANRDNCKLFCLQREDYISIAL 561

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN----ILEYAETA 240
           L+G   D   G+  +G   A  L+ EY     +          K  EN    +L+  E+ 
Sbjct: 562 LSG--GDYCAGLVKVGAIGALELVSEY-----VECRIDNTNDLKVIENRIMRLLKNVESL 614

Query: 241 RL---------SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            L         SR  +MLR  V     +E++     N   + ++L
Sbjct: 615 FLTAPDDKRVASRNAMMLRRHVTEANDMENIKCVCSNQDAVHAYL 659


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|17507747|ref|NP_491891.1| XPG (Xeroderma Pigmentosum group G) DNA repair gene homolog family
           member (xpg-1) [Caenorhabditis elegans]
          Length = 829

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 78/225 (34%), Gaps = 49/225 (21%)

Query: 79  DYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII 138
           +Y     K PE+       ++      GIP IE  G EA+        +   +G    ++
Sbjct: 466 NYSDEDDKTPELYRD----LQEFLTNAGIPWIESPG-EAEAQCVELERLGLVDG----VV 516

Query: 139 STDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG--------------IPPEKMVCLQA 184
           S D D+    +     +   K  ++      +++G              +  E  + +  
Sbjct: 517 SDDSDVWAFGAQHVYRHMFSKNRRV------QRYGEQTTANRDNCKLFCLQREDYISIAL 570

Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN----ILEYAETA 240
           L+G   D   G+  +G   A  L+ EY     +          K  EN    +L+  E+ 
Sbjct: 571 LSG--GDYCAGLVKVGAIGALELVSEY-----VECRIDNTNDLKVIENRIMRLLKNVESL 623

Query: 241 RL---------SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276
            L         SR  +MLR  V     +E++     N   + ++L
Sbjct: 624 FLTAPDDKRVASRNAMMLRRHVTEANDMENIKCVCSNQDAVHAYL 668


>gi|311279296|ref|YP_003941527.1| ribonuclease D [Enterobacter cloacae SCF1]
 gi|308748491|gb|ADO48243.1| ribonuclease D [Enterobacter cloacae SCF1]
          Length = 386

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 55/212 (25%), Gaps = 29/212 (13%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
             + Y  +  +Y  I     ++          + +          ++ +   I +   D 
Sbjct: 1   MGANYRESRLNYQMITQDDALKAACDAARGAPAIALDTEFVRTRTYYPQLGLIQMYDGDS 60

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                    T +                         +    +    K  H    D  V 
Sbjct: 61  VVLIDPLSITDWTP----------------------FRDLLLDGAVTKYLHAGSEDLEVF 98

Query: 477 HR-YGISMRGFEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
              +G+      D   L ++       S   A++ +++       + KS   +  + +  
Sbjct: 99  LNTFGVLPEPLIDTQILAAFCGRP--MSWGFAAMVEEYTGIA---LDKSESRTDWLARPL 153

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
             +  ++A  +   +L +   L  +      L
Sbjct: 154 TERQCDYAAADVWYLLPIAHKLMAETEASGWL 185


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|70730923|ref|YP_260664.1| excinuclease ABC subunit C [Pseudomonas fluorescens Pf-5]
 gi|92058694|sp|Q4KAR9|UVRC_PSEF5 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|68345222|gb|AAY92828.1| UvrABC system, C protein [Pseudomonas fluorescens Pf-5]
          Length = 607

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 25/163 (15%)

Query: 81  KANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE-KEGFA 134
           K    K+P++L       QL + R       +P         D I+      A  K GF 
Sbjct: 453 KDGEGKLPDILLVDGGKGQLSMARDVLNELAVP---------DLILLGVAKGATRKAGFE 503

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
              ++       L   +  L+    ++  D  H   ++ I   +    +         + 
Sbjct: 504 TLYLNDAAHEFTLKGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTSTLE 555

Query: 195 GIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILE 235
           G+ G+G K    LL+ +G L+ +   +   I K     + + E
Sbjct: 556 GVAGVGPKRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598


>gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 453

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 43/181 (23%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID------------LSVHTSQDS 439
             + T    A H +   I I  +D         + +               +S     D+
Sbjct: 7   VDLETTGATATHDRITEIGIVEVDADGSVREWQQLVNPGMRIPPFIEQLTGISDEMVADA 66

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSY 494
                +  E++  L      E  L I HN ++D   L     R G++ R      + +S 
Sbjct: 67  PPFEAIAGEVMKRL------EGRLFIAHNARFDYGFLKNEFKRLGVTFRAAVLCTVKLSR 120

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
            L      H++ S+ ++       E+               ++ +  A+ ++ +I Q W 
Sbjct: 121 TLFPEHKRHNLDSLIERH------EL--------------RAEARHRALADAQLIHQFWQ 160

Query: 555 L 555
            
Sbjct: 161 K 161


>gi|194863176|ref|XP_001970313.1| GG10553 [Drosophila erecta]
 gi|190662180|gb|EDV59372.1| GG10553 [Drosophila erecta]
          Length = 1237

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 66/211 (31%), Gaps = 43/211 (20%)

Query: 98   VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
             +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 864  CQELLRLFGIPYIVAP-MEAEAQCAFLN--ATDLTHGT--ITDDSDIWLFGGRTVYKNFF 918

Query: 158  VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
             + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 919  AQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGQ 976

Query: 215  ENILINASRIKQKKRRENILEYAE--------------TARLS--RKL------------ 246
            +    N S +  +   + ++ + +              +ARLS  +KL            
Sbjct: 977  D---ANGSGVCNQSVLQTLVRFRDWWQAHKSSNLPPGSSARLSLRKKLKNIELHEGFPNG 1033

Query: 247  --VMLRTDVPITIPLEHLILEDCNGPRLISF 275
              V       I    +       +   +  F
Sbjct: 1034 AVVEAYLAPTIDDNRDAFSWGTPDVESIREF 1064


>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
 gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
           America USA6153]
 gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|157820709|ref|NP_001101231.1| exonuclease 3'-5' domain-containing protein 1 [Rattus norvegicus]
 gi|149023013|gb|EDL79907.1| exonuclease 3'-5' domain-like 1 (predicted) [Rattus norvegicus]
          Length = 562

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 201 LQMILEDKRILKVIHDCRWLSDCLSHQYGIMLSNVFDTQVA 241


>gi|332533384|ref|ZP_08409249.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037093|gb|EGI73550.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
          Length = 304

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 5/139 (3%)

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI 489
           + V   +     + L +  L    +  ++   LK+ H+   D  V  +Y G       D 
Sbjct: 13  IQVFDGEHLALIDPLAELSLFDFWEILKDPSVLKVLHSPSEDIEVFQKYAGFVPSPLFDT 72

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
                +L  G +    A + ++       EI KS   +  + +    +  ++A  ++  +
Sbjct: 73  QFALQLLGEG-NCMGFALMVKELQGI---EIDKSESRTNWLQRPLTKKQLDYAAADTFYL 128

Query: 550 LQLWLLLRPKLIVEKLLHV 568
           L  + L+  ++       +
Sbjct: 129 LPCFELIIERINAAGFFDI 147


>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1434

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 20/144 (13%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
           E      F   T  ++A  S+   I I+ +  K        T  ID  +     +T    
Sbjct: 417 ENTEYVVFDTETTGLNA--SEHTIIEIAAVKMKGAEIIDQWTELIDPQLQIGPKTTEITG 474

Query: 445 LTKE----------ILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM--RGFED 488
           +T E          +L   K F  +   + + HN ++DK  +     R G+      F D
Sbjct: 475 ITNEMLRGQETLDVVLRKFKDFTGDA--ILVAHNAEFDKAFINACAKRIGMEPWTNPFLD 532

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++ ++  G  ++ + S+A+K+
Sbjct: 533 TLPLARLMYKGMRNYRLGSLAKKF 556


>gi|148245851|gb|ABQ52888.1| DNA polymerase [uncultured marine microorganism]
 gi|148245859|gb|ABQ52892.1| DNA polymerase [uncultured marine microorganism]
          Length = 119

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 13/116 (11%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI       
Sbjct: 1   AKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQEHFGGNI------- 53

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  +    +IDR  T + S F+S S Q   +N  +  +K  L + Q +++  
Sbjct: 54  ------TLEFHDKIDRSETHQLSLFNSSSTQVETVNKIEEEKKESLIKPQIITEIE 103


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 415 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 474

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 532

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 533 LELARFLFPEMKNHRLNTMCKK 554


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|332235202|ref|XP_003266794.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Nomascus
           leucogenys]
          Length = 514

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 144 LQMILEDKKILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 184


>gi|319407179|emb|CBI80818.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 383

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 77/213 (36%), Gaps = 33/213 (15%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I NT D++  +  L      +          F  +   I +++ D     +  ++ + 
Sbjct: 2   ELITNTIDLEISIAALRKSNFVTVDTEFIRETTFWPQLCLIQVASQD----ITILIDPMV 57

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFE---NEHFLKIGHNIKYDKLVLHRYG-ISMR 484
            D++                    L+ FF+   ++  +K+ H  + D  +++  G I   
Sbjct: 58  QDIN--------------------LQPFFDLMIDKKVVKVFHAARQDIEIIYHLGGIIPS 97

Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
              D  +   +   G S      I Q+   +   +   SR +      +S+ Q+  +A+ 
Sbjct: 98  PLFDTQVAGSICGFGDSI-SYDQIVQRCTGHHLDKS--SRFTDWSCRPLSEKQLL-YAVS 153

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           +   +  ++L L+ +L  +K  H     +  ++
Sbjct: 154 DVTYLRDVYLALKKQLEEKKRTHWMHD-EMTLL 185


>gi|119962878|ref|YP_948455.1| DNA polymerase III subunit epsilon [Arthrobacter aurescens TC1]
 gi|119949737|gb|ABM08648.1| putative DNA polymerase III epsilon subunit [Arthrobacter aurescens
           TC1]
          Length = 236

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 31/149 (20%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKD--------------DTSFKVETIFIDLSVHT 435
           A+F + T   ++  ++ +  +I+ +D                 +   +   +    +   
Sbjct: 10  AAFDLETTGKNSRSARIVTASITVVDAHGGLIAEHEWLADPGVEIPLEASEVHGVTTEKA 69

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGI---SMRGFED 488
             +      +T+E+   L+  F++     I  N  YD  VL     RYG+   S     D
Sbjct: 70  RAEGRPAAEVTREVAGVLQGLFDDGT-PVIAFNASYDFTVLAAESARYGVPQLSRFPVLD 128

Query: 489 IMLMSYVLDSGRSSH-----DIASIAQKW 512
                YV++     +      + ++ +++
Sbjct: 129 P----YVMNKQMDRYRKGKRTLTALCEEY 153


>gi|317048442|ref|YP_004116090.1| ribonuclease D [Pantoea sp. At-9b]
 gi|316950059|gb|ADU69534.1| ribonuclease D [Pantoea sp. At-9b]
          Length = 373

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 78/267 (29%), Gaps = 37/267 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y+ I     +     K     + +          ++ +   I +   +Q          
Sbjct: 2   NYSLIDQNDQLAAVCDKARQHSAVALDTEFVRTRTYYPQLGLIQLFDGEQ--------LV 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG 485
           +   L++                 +       +    K  H    D ++ LHR+G     
Sbjct: 54  LIDPLNISDW--------------APFVALLRDTQVTKFLHAGGEDLEVFLHRFGCLPDP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A++   +      E+ KS   +  + +   ++  E+A  
Sbjct: 100 MVDTQILAAFAGQP--LSWGFAAMVMHFNQI---ELDKSEARTDWLARPLTARQCEYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
           +   +L +   L  +      +       D      +  +       D     Q+     
Sbjct: 155 DVAYLLPIAHQLVAQTEAAGHMAAALSECDILCQRRLDVLAPEDAWRDITNAWQLR---P 211

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLG 630
           + L +L+     L+  + NL+  K + 
Sbjct: 212 RQLAALQR----LAAWRLNLARQKDMA 234


>gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 1442

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV-------- 433
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINENITNL 461

Query: 434 -HTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGIS-MRGFE- 487
            + +Q+        K  L  +K+ F+N        I  +I +    L ++G+  ++    
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFDNHILVAHNGISFDINFINQRLLKWGLKPLKNPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++S  ++  +S H + +I +K+      E+ 
Sbjct: 522 DTLMISRAINPFKS-HRLGAICKKYEVDYNDEVA 554


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|115896423|ref|XP_795972.2| PREDICTED: similar to G protein-coupled receptor
           [Strongylocentrotus purpuratus]
 gi|115925241|ref|XP_001183731.1| PREDICTED: similar to G protein-coupled receptor
           [Strongylocentrotus purpuratus]
          Length = 976

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 11/106 (10%)

Query: 451 SYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSH------ 503
           S LKK  E++  LK+ H    D   + H +G+ ++   D  +  + +    + +      
Sbjct: 779 SSLKKTLEHDSILKVIHACNSDTYSLYHDFGVKLKNVFDTSIAMFTIMEQLNRNHPYQIG 838

Query: 504 --DIASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIEN 545
              +  +  +  S+   +  K    +    KI     ++  +A  +
Sbjct: 839 YKALCELLGEAASHKDDDFKKKMIETEDFWKIRPLTEEMIYYAASD 884


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 415 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 474

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 532

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 533 LELARFLFPEMKNHRLNTMCKK 554


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 1435

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 415 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 474

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 532

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 533 LELARFLFPEMKNHRLNTMCKK 554


>gi|71662929|ref|XP_818464.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70883717|gb|EAN96613.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 387

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 85/284 (29%), Gaps = 33/284 (11%)

Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393
            +       S+ TP           S   I    Y  +     + + V  L    S +  
Sbjct: 18  ATPAAGSSLSKGTPSSASSSASISPSSLAILKYPYEVVDTPGKLDEAVGSLLKARSIALD 77

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453
           I          +   I++           +  +    +       +    T  K +    
Sbjct: 78  IEAFCTTEQAKQLGRISL----------LQACSDAKPVVFLFDVLTLTAPTFVKSV---- 123

Query: 454 KKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIML----MSYVLDSGRSSHDIASI 508
           + F  N    K+  + + D   L  + G+   G  D+ +    + + L S      +  +
Sbjct: 124 EPFLRNRGIRKLLFDCRRDVEALSSQLGLKPEGVLDLQVFFTAIQWKLRSVNRRSGMTYV 183

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKIS-------DSQVQEHAIENSNVILQLWLLLRPKLI 561
            +     TR++   + ++++ +                E+A ++   IL L   L  K  
Sbjct: 184 LKSVAGLTRQDGDSAVQAAMTLGNRPVWDIRPLPDHFLEYAADDVRHILLLANHLVEKRE 243

Query: 562 -------VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598
                  VE+L   Y         V  + + T  +++   L++ 
Sbjct: 244 FPVDLVSVERLTAQYVEHYAVGKPVTEEADATPAEVNVAWLERY 287


>gi|298291118|ref|YP_003693057.1| ribonuclease D [Starkeya novella DSM 506]
 gi|296927629|gb|ADH88438.1| ribonuclease D [Starkeya novella DSM 506]
          Length = 385

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 10/175 (5%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSY 452
             TDT+ A   +       T+D +             + + + +++   + +   I L+ 
Sbjct: 5   TTTDTLSAACERLARHPFITVDTEFLRETTFWPKLCVVQLASVEEAIVVDAVADGIDLAP 64

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
                 +E  LK+ H  + D  +V H  GI      D  + + VL      H   SI+  
Sbjct: 65  FFALMSDEKVLKVFHAGRQDIEIVWHLAGIIPHPVFDTQVAAMVL-----GHG-DSISYD 118

Query: 512 WL-SYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEK 564
            L      E+L          +   S  Q  +A  +   +  ++L L   L    
Sbjct: 119 QLVQRITGEVLDKSLRFTDWSRRPLSAAQIAYAEADVTHLRDVFLKLDADLKKRG 173


>gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
 gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
          Length = 239

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 66/182 (36%), Gaps = 34/182 (18%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D      +    +        + +V   +ID      +++   + L++E LS
Sbjct: 6   FDTETTGLDPSKGDRVVEIGAVEILNLIPTGRVFHAYIDPERDMPEEAFRVHGLSREFLS 65

Query: 452 ---YLKKFFEN-----EHFLKIGHNIKYD-------KLVLHRYGISMRGFEDIMLMSYVL 496
                ++  E      E    + HN ++D         +L+   ++     D + ++  L
Sbjct: 66  QHRKFREIAEEFIDFIEDSPMVAHNAEFDVRFINAEFSMLNFAPLAPARIVDTLAIARRL 125

Query: 497 DSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPIDKISDSQV 538
             G S   + ++ Q++                  L+    E++  R++++ +  +S S+ 
Sbjct: 126 HPG-SPASLDALCQRYGIDLSRRDKHGALLDAGLLAEVYAELMGGRQAALSLQTVSVSRR 184

Query: 539 QE 540
            +
Sbjct: 185 AQ 186


>gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 849

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 110/316 (34%), Gaps = 37/316 (11%)

Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402
           S +   + + +R        I+          +      ++ E      F + +  +D  
Sbjct: 449 SPELFNQTYRQRYVSYGMRMIDLFQEAAYEYEEPYGLLKKQFEKGRIVIFDVESTGLDVT 508

Query: 403 HSKPIAI-AISTLDQKDDTSFK------VETIFIDLSVHTSQDSTGK-NTLTKEILSYLK 454
             + I I AI  ++ +   SF+             L    S D   +     +E+    +
Sbjct: 509 QDEVIQIAAIELVNGEYTRSFERFIKPSHSVGDSALVHGFSDDYLNEHGEEAREVFLQFQ 568

Query: 455 KFFENEHFLKIGHNIKYDKLV----LHRYGISMR---GFEDIMLMSYVLDSGRSSHDIAS 507
            F E    L IGHN++YD  +    ++R G+      G+ D + +   L     +H + +
Sbjct: 569 AFVE--GALLIGHNVQYDLKIVSSQMNRLGLMFENSMGYYDTLDIVRRLYPDLKNHKLDT 626

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL------- 560
           ++  ++  + +            + + D    +  +  S  +L      R K+       
Sbjct: 627 VSA-YVGVSHEP---------THNAMDDILATKDVLVKSMDLLMTHHENRKKVMKFYEPH 676

Query: 561 ---IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617
               +++L  + +  +     V  +  I   + + +  KQ   E+   + +    ++  +
Sbjct: 677 LWGAIQRLKEIQDCFETQPPHVAMKGLIDAFECEDEAHKQSIIELLNYIGATYHRLHHTN 736

Query: 618 GEKFNLSSPKQLGDIL 633
             + NL    Q+ +++
Sbjct: 737 PHQPNLEIWIQMLNLM 752


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 1433

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|188991267|ref|YP_001903277.1| hypothetical protein xccb100_1872 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733027|emb|CAP51225.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 362

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 8/127 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             LK +      +K+ H+   D +      G+  R   D  + +       +        
Sbjct: 61  DALKDWLVAPDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAA-----ALAGVGGGMGY 115

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKL-IVEKLLH 567
           QK +      +L   ++     +   S  Q E+A ++   +  +   L  KL   ++L  
Sbjct: 116 QKLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTAKLTAQDRLGW 175

Query: 568 VYERLDK 574
           + E  ++
Sbjct: 176 LAEDGER 182


>gi|312960119|ref|ZP_07774631.1| UvrABC system protein C [Pseudomonas fluorescens WH6]
 gi|311285613|gb|EFQ64182.1| UvrABC system protein C [Pseudomonas fluorescens WH6]
          Length = 607

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 25/163 (15%)

Query: 81  KANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE-KEGFA 134
           K    K+P++L       QL + R       +P         D I+      A  K GF 
Sbjct: 453 KDGEGKLPDILLVDGGKGQLSMARDVLNELAVP---------DLILLGVAKGATRKAGFE 503

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
              ++       L   +  L+    ++  D  H   ++ I   +    +         + 
Sbjct: 504 TLYLNDAAHEFTLKGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTSTLE 555

Query: 195 GIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILE 235
           G+ G+G      LL+ +G L+ +   +   I K     + + E
Sbjct: 556 GVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKLAE 598


>gi|213692580|ref|YP_002323166.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524041|gb|ACJ52788.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458732|dbj|BAJ69353.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 433

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 13/216 (6%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK--VETIFIDLSVHTSQDST 440
           +L          +T T+D +H    A+A +T     D            D  +   ++  
Sbjct: 10  RLLKEPRGGVPDVTSTLDGYHRACDALAEATGSLAADAERASGFRYGHEDWLIQFKREGA 69

Query: 441 GKNTLTKEILSYL-KKF--FENE--HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L    L+     +  F +       I H+   D       G+  +   D  + + +
Sbjct: 70  GIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKALFDTEIAARL 129

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  V+++L  L
Sbjct: 130 L--GLHRFGLAAVTEHYLGIT---LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETL 184

Query: 556 LRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590
           +R  L    K     E     ++  ++  ++  I  
Sbjct: 185 MRRDLKAAGKDEWAAEEFSHALVAGLAPRKLHPIPW 220


>gi|209548705|ref|YP_002280622.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534461|gb|ACI54396.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 381

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T D+    ++L      +          F  +   I ++        S   E +   
Sbjct: 2   IETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMA--------SPTTEVLVDP 53

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDI 489
           L+                 L+   +   +   LK+ H  + D  ++   G +      D 
Sbjct: 54  LAKGID-------------LAPFFELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIFDT 100

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + + V   G S      +  +  +    +   SR +      +SD Q+ E+A+ +   +
Sbjct: 101 QVAAMVCGFGDSV-SYDQLVSRIKNVHIDKS--SRFTDWSRRPLSDKQL-EYALADVTHL 156

Query: 550 LQLWLLLRPKLIVEK 564
             ++L L+ +L  E 
Sbjct: 157 RDVYLSLKAELDREG 171


>gi|168047942|ref|XP_001776427.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672153|gb|EDQ58694.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 268

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKE--EK 162
            +    +  +EAD    T   + +       ++S+D D +    P      D V+   + 
Sbjct: 159 SLDVCAVGEYEAD---VTCARMCQSREVDA-VLSSDYDSLLFGCPYLIKDIDMVEGYADV 214

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
           I ++ +   + I   + + +  L G   D    I  +G KTA   +Q +G LE
Sbjct: 215 ITLQSIYSHFNIDHFQAIDICILMG--TDYNKKISKVGPKTALAEIQSHGKLE 265


>gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946]
 gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946]
          Length = 252

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 16/138 (11%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF--------KVETIFIDLSVHTS 436
           +        + T  + A  ++ I IA   L+ +    F         +      L+  T 
Sbjct: 75  QGKPVVVLDLETTGLSALENEIIEIAFIRLEGEKRQVFQRFVNPGSPIPPFISRLTGITH 134

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIML 491
           +D  G   +   +   L    E+   + I  N  +D   L     R G  M     D + 
Sbjct: 135 RDLEGAPDVYTVLEEAL-PLLED--SVLIIQNAPFDLGFLRPRFLRLGYKMDNEVIDTVA 191

Query: 492 MSYVLDSGRSSHDIASIA 509
            +     G S   +  +A
Sbjct: 192 WARRALPGLSKRGLDHLA 209


>gi|217976404|ref|YP_002360551.1| ribonuclease D [Methylocella silvestris BL2]
 gi|217501780|gb|ACK49189.1| ribonuclease D [Methylocella silvestris BL2]
          Length = 405

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 65/195 (33%), Gaps = 28/195 (14%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T+ + +  Q+L +    +          F  K   + +++ D+             
Sbjct: 9   LITTTEALAEVCQRLASHAFVTVDTEFLRETTFWPKLCVVQLASADEA------------ 56

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFED 488
                 + D+          L+ L +   +   +K+ H  + D  ++     I      D
Sbjct: 57  -----VAVDALASGLD----LAPLFELMADPAVVKVFHAARQDLEIVWNLAKIIPAPLFD 107

Query: 489 IMLMSYVLD-SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
             + + V     + S+    + Q   +  +  + KS + +    +       ++AI +  
Sbjct: 108 TQVAAMVCGFGDQVSYG--DLVQ---TVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVT 162

Query: 548 VILQLWLLLRPKLIV 562
            +  ++ +L+ KL  
Sbjct: 163 YLRDIYAILQDKLKE 177


>gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7]
          Length = 396

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/204 (9%), Positives = 56/204 (27%), Gaps = 31/204 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I   + +  +  ++      +          ++ +   + ++T D               
Sbjct: 17  IDTAEGLAAFCGEIAGAQWIALDTEFVREKTYYPRLCLVQVATPD--------ALACIDP 68

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
           +++                L  L     +    K+ H    D  +L +  G       D 
Sbjct: 69  IALPD--------------LGPLAALLHDPAVTKVVHAAHQDMEILLQSTGRVPTPVFDT 114

Query: 490 MLM-SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSN 547
            +  S +    +  +  A + Q +L            +     +      Q  +A ++  
Sbjct: 115 QVAVSLLGHGDQIGY--ARMVQIYLDLELD----KGHTRTDWSQRPLETAQLRYAADDVR 168

Query: 548 VILQLWLLLRPKLIVEKLLHVYER 571
            + +++ ++   L  +  L     
Sbjct: 169 HLARVYPMILKDLEEKGRLDWLSE 192


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 17/164 (10%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI--STLDQK 417
           +  I  D +  I N  D     +         F I T  +     K   I       +Q 
Sbjct: 379 EAKIIEDDFRIITNPYDSMNLEE------FVVFDIETTGLSNATEKITEIGAVKIVDNQI 432

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDK 473
            D   ++    I +    ++ ++  N + K+   I   L +F +       I HN  +D 
Sbjct: 433 VDEFNQLINPEIPIPEKITELTSITNEMVKDMPKIEEVLPEFLKFVGDCTLIAHNADFDM 492

Query: 474 LVLHRYGISMR-----GFEDIMLMSYVLDSGRSSHDIASIAQKW 512
             + +  + +R      + D +  +  L+    +H + ++ +K+
Sbjct: 493 GFIKKNCLDLRINPIRTYIDTLAFARALEPHLKNHKLDTLTKKY 536


>gi|332185190|ref|ZP_08386939.1| ribonuclease D [Sphingomonas sp. S17]
 gi|332014914|gb|EGI56970.1| ribonuclease D [Sphingomonas sp. S17]
          Length = 392

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 81/256 (31%), Gaps = 35/256 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I ++  +     +L      +          +  +   I I+  D ++  +   +   +
Sbjct: 6   LITDSATLANLCARLSQADFITVDTEFMRESTYWPELCLIQIA--DTQEAAAIDPKAPGL 63

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFED 488
           D++                    L     N+  LK+ H    D  +++   G +     D
Sbjct: 64  DMTP------------------LLDLLVNNDEVLKVFHAGGQDIEIIYNLTGKTPHPLFD 105

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + +  L  G      +++   WL     ++ K  + +    +  D +  ++AI +   
Sbjct: 106 TQIAAMALGQGEQI-GYSNLVDSWLGI---QVDKGARFTDWSRRPLDQRQVDYAIGDVTH 161

Query: 549 ILQLWLLLRPKLIVEK----LLHVYERLDKPMIDV-VSQMEITGIQID---QDLLKQVSA 600
           +  ++  +  +L        L    ERL  P             +++     D+L ++ A
Sbjct: 162 LSDIFPRMLERLRKTGRGAWLDQEMERLADPEHYANDPNSAWKRVRVSGRKPDMLGRMKA 221

Query: 601 EISKNLLSLEENIYDL 616
                   LE    DL
Sbjct: 222 --LARWRELEAQAKDL 235


>gi|170109177|ref|XP_001885796.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639376|gb|EDR03648.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 250

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 18/123 (14%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSH-----DIA 506
           L+   E+    K+ ++++ D   L+  YG+++ G  D+ L+   +      H      + 
Sbjct: 86  LRMILEDTGIKKVFYDVRNDADALYNLYGVNLTGVYDLQLLELAVRHSLRRHTKFLNGLG 145

Query: 507 SIAQKWLSYTRK-EILK-----------SRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
                +L+   + E +K               S+  D+  D ++  +  ++  ++ +L  
Sbjct: 146 KSITSYLTPPTEWEPIKQAGLRLFQPDFGGSYSVFEDRPLDPRIVAYCAQDVTLLFELEE 205

Query: 555 LLR 557
            LR
Sbjct: 206 TLR 208


>gi|158258485|dbj|BAF85213.1| unnamed protein product [Homo sapiens]
          Length = 514

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 144 LQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 184


>gi|34303939|ref|NP_689809.2| exonuclease 3'-5' domain-containing protein 1 [Homo sapiens]
 gi|317373564|sp|Q8NHP7|EXD1_HUMAN RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
           AltName: Full=Exonuclease 3'-5' domain-like-containing
           protein 1
 gi|34192161|gb|AAH30628.2| Exonuclease 3'-5' domain containing 1 [Homo sapiens]
          Length = 514

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 144 LQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 184


>gi|310794900|gb|EFQ30361.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
          Length = 199

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
             L+   E+    K+  +++ D   L   +GI + G +D+ LM
Sbjct: 31  QALQSVLESPKITKVFFDVRNDSDALFAHFGIKLDGVQDLQLM 73


>gi|254443317|ref|ZP_05056793.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257625|gb|EDY81933.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 370

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 62/193 (32%), Gaps = 30/193 (15%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +    +++     L      +     D +  F +K   + +          F      +D
Sbjct: 9   VDKQDELEDLCDHLAKQAEIALDSEADNLHHFETKLCLLQL---------RFDGTIYLLD 59

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI 489
           ++     D         EILS L           I H   +D  +   + G   +   D 
Sbjct: 60  VTADLDLDRFW------EILSGL---------HLIMHGSDFDLRLFEEFCGFEAKSLFDS 104

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           ML S +L  G     +A++ ++        I K  + S    +    ++ ++A  +   +
Sbjct: 105 MLASQLL--GIKRIGLAALLEENFGVK---IPKDSQKSDWSQRPLTPKMLKYAATDVLYL 159

Query: 550 LQLWLLLRPKLIV 562
            +L   L  ++  
Sbjct: 160 HELRDKLMARIDE 172


>gi|72135851|ref|XP_791943.1| PREDICTED: similar to XPGC protein [Strongylocentrotus purpuratus]
 gi|115965955|ref|XP_001188120.1| PREDICTED: similar to XPGC protein [Strongylocentrotus purpuratus]
          Length = 1102

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 10/116 (8%)

Query: 99   RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
            +   Q FGIP IE    EA+   A      + EG     I+ D D+          +   
Sbjct: 909  KEMLQCFGIPYIESPQ-EAEAQCAFLDLTNQAEGT----ITDDGDIWLFGGRRVFRHFFS 963

Query: 159  KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
            K+   E   +  + +   +  +K++ L  L G   D   GI GIG   A  +L E+
Sbjct: 964  KKKDPEYFRVGDIERHLLLDRKKLINLAYLVG--SDYTLGIQGIGSVGAMEILAEF 1017


>gi|148245863|gb|ABQ52894.1| DNA polymerase [uncultured marine microorganism]
          Length = 119

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI       
Sbjct: 1   AKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQEHFGGNI------- 53

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  +    +IDR  T + S F S S Q   +N  +  +K  L   Q +++  
Sbjct: 54  ------TLEFHDKIDRSETHQLSLFDSSSTQVGTVNKIEEEKKESLIEPQIITEIE 103


>gi|149237665|ref|XP_001524709.1| hypothetical protein LELG_03741 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451306|gb|EDK45562.1| hypothetical protein LELG_03741 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 800

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 30/195 (15%)

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTD--------KDLMQLVSPTTC 153
                I  +    +EAD  +     I   +G    I+S D        + L+  +   + 
Sbjct: 137 LDLLKIKYVVAP-YEADPQMVYLEKIGLVDG----ILSEDSDLLIFGCRKLITKLKDDST 191

Query: 154 LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
             +  +    ++ ++         ++     L+G   D   G+ GIG K++  L+++Y  
Sbjct: 192 CVEIDRHNFKNVANMSYLGNFSESQLRLAAMLSG--CDYTKGVQGIGLKSSVQLVRKYIY 249

Query: 214 LENILINASRIKQKKRRENILEY---AETAR--------LSRKLVMLR---TDVPITIPL 259
           L+ +++   +   K   +N+ +    A+ A          S+KL  L     ++ + + +
Sbjct: 250 LQKVILAI-KASGKMVPDNLEDDIYRADLAFQFQKVFDPRSQKLTTLNELPEELEVDVEI 308

Query: 260 EHLILEDCNGPRLIS 274
             +    C   RLI 
Sbjct: 309 LEMYCGRCIDDRLIQ 323


>gi|119384625|ref|YP_915681.1| ribonuclease D [Paracoccus denitrificans PD1222]
 gi|119374392|gb|ABL69985.1| ribonuclease D [Paracoccus denitrificans PD1222]
          Length = 401

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 68/195 (34%), Gaps = 19/195 (9%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            +  T ++ ++ +  +     +          ++SK   I  +        +        
Sbjct: 15  TLSTTAELAEFCELAKAEPYVTLDTEFLRERTYYSKLCLIQAALPPASATKAA------G 68

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFED 488
            LSV       G +      L  L   F ++  +K+ H  + D ++  H  G+      D
Sbjct: 69  GLSVLIDPLVEGLS------LEPLYDLFRHKPTVKVFHAARQDLEIFFHDAGVMPDPLFD 122

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK-SSIPIDKISDSQVQEHAIENSN 547
             + + V   G       ++ +K     R+ + KS + +      +SD+Q   +A+ +  
Sbjct: 123 TQIAAMVCGFGEQV-GYETLVKK---IARQPLDKSSRFTDWSHRPLSDAQAA-YALADVT 177

Query: 548 VILQLWLLLRPKLIV 562
            +  ++  L  +L  
Sbjct: 178 HLRAIYEFLSAQLDK 192


>gi|114656434|ref|XP_001147941.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1
           [Pan troglodytes]
          Length = 514

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 144 LQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 184


>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
 gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
          Length = 1513

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVET-IFIDLSVHTSQDSTG 441
                 F + T    A   + I I    +   +  D  S  V   I I   + T      
Sbjct: 470 NDTYVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDRFSTFVNPEIPIPFRIETLTHIND 529

Query: 442 KNTL-TKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLHR----YGISM-RGFEDIMLMSY 494
           +  +   +I   L +F E  E  + + HN ++D   +       GI++     D +L++ 
Sbjct: 530 QMVMNAPKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLLAQ 589

Query: 495 VLDSGRSSHDIASIAQKWLSYTRK 518
            L     ++ + ++  K L+   +
Sbjct: 590 FLMPNLHNYKLDTL-TKHLNVVLE 612


>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1449

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 18/239 (7%)

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
                  D     +  + +    +E  G+    +I +       +  +++D     +   
Sbjct: 317 REKVKKEDTAEEKMVELHVHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYAVVHSYPA 376

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDI--QQWVQKLETIGSASFKIITDTMDAFH 403
             +        +     I       I +   +      +K++      F I T  +++  
Sbjct: 377 AFKTAKKLSTDEEKMKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIETTGLNSHT 436

Query: 404 SKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKK 455
           ++ I I    +      D   ++      +  H ++      +         +++     
Sbjct: 437 NEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQVANEPKIDKVIGKFVD 496

Query: 456 FFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FEDIMLMSYVLDSGRSSHDIASI 508
           F  +   + + HN  +D   + R       I  +    D + M+  L      + +  +
Sbjct: 497 FIGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL 553


>gi|119612879|gb|EAW92473.1| exonuclease 3'-5' domain-like 1 [Homo sapiens]
          Length = 514

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 144 LQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 184


>gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 232

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 20/139 (14%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
               T  +D      I    +        +      +++        +   + +T E L 
Sbjct: 6   LDTETTGLDPAQGHRIIEVAAVEMVNRRLTGNHLHRYVNPDRDIDAGAMQVHGITPEFLQ 65

Query: 452 YLKKFFEN---------EHFLKIGHNIKYDKLVLHR----YGISM-----RGFEDIMLMS 493
             K  F +         +    I HN  +D   L+      G+ +      G  D + M+
Sbjct: 66  D-KPRFGDIAREFVDFIDGAELIIHNAPFDVGFLNMELRLLGMPLLATCCGGVTDTLAMA 124

Query: 494 YVLDSGRSSHDIASIAQKW 512
             L  G+  +++ ++ +++
Sbjct: 125 KALHPGQ-RNNLDALCKRY 142


>gi|109080718|ref|XP_001099755.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1
           [Macaca mulatta]
          Length = 514

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 144 LQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 184


>gi|296453936|ref|YP_003661079.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
 gi|296183367|gb|ADH00249.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
          Length = 433

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 12/189 (6%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK--VETIFIDLSVHTSQDST 440
           +L          +T ++D +H    A+A +T     D            D  +   ++  
Sbjct: 10  RLLKEPRGGVPDVTSSLDGYHRACDALAEATGSLAADAERASGFRYGHEDWLIQFKREGA 69

Query: 441 GKNTLTKEILSYL-KKF--FENE--HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L    L+     +  F +       I H+   D       G+  +   D  + + +
Sbjct: 70  GIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKALFDTEIAARL 129

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  V+++L  L
Sbjct: 130 L--GLHRFGLAAVTEHYLGIT---LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETL 184

Query: 556 LRPKLIVEK 564
           +R  L    
Sbjct: 185 MRRDLKAAG 193


>gi|89891774|ref|ZP_01203276.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium
           BBFL7]
 gi|89515929|gb|EAS18594.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium
           BBFL7]
          Length = 304

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 22/183 (12%)

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-SMRGFEDIMLMSYVLD 497
             GK     + L  L+   E+  F  I  N ++ K  L  YG+  + G         + D
Sbjct: 48  EDGKLFAFDQDLDALENVIEDPRFTLINQNFRFMKRFLRMYGVKEVDGI--------LAD 99

Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
            G SSH     A +  S      L  R +    +  +   V ++  ++ N I + +  LR
Sbjct: 100 LGVSSHQFDE-ADRGFSTRFDARLDMRMNQES-ELDAVRVVNDYEEDDLNRIFKEYGELR 157

Query: 558 --PKL-------IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608
             P+L         E L+    +L +     V +     +     + + +  E+++ +  
Sbjct: 158 IAPRLTRAIIAKRQEGLIETVAQLKEICAPFVPERIQHKML--AQVFQAIRIEVNQEMDV 215

Query: 609 LEE 611
           LEE
Sbjct: 216 LEE 218


>gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 44/224 (19%)

Query: 392 FKIITDTMDAFHSK-PIAIAISTLDQKDDTSFKVETIFIDLS---------VHTSQDSTG 441
           F   T  +D       + I    L  +  T       +                S     
Sbjct: 6   FDTETTGLDPKTGDRMVEIGCVELMNRVPTGETFHAYYNPERDMPPAAEEVHGLSAAFLS 65

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-------RYGISMRGFEDIMLMSY 494
              L ++    L +F  +     + HN  +D   L+       R  IS+    D + ++ 
Sbjct: 66  DKPLFRDTADALLEFLGDA--PLVAHNAGFDFGFLNTELELIEREAISLDRMVDTVQIAR 123

Query: 495 --------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPID------ 531
                    LD+  S + +           +  + L+    E+L  R+  + +D      
Sbjct: 124 KKHPGAKVSLDALCSRYGVDRSHRVKHGALLDAELLAQVYVELLGGRQIGLGLDPEAADT 183

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575
             S++  +   +  +    +       +L   K+    E ++ P
Sbjct: 184 DPSEAAWKPETVARAFRTPRPHAASAEELARHKVF--LEGIESP 225


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM
           7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 17/144 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           LE      F + T  + A +   I +A   +   +  D           LS         
Sbjct: 416 LEEDTYVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDKFEAFANPHHPLSATTIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-------RGFED 488
           + D         +++   K++  ++  + + HN  +D   L+     +           D
Sbjct: 476 TDDMVRDAPDVVDVVRDFKEWIGDD--VLVAHNASFDMGFLNVAYKRLLKTEKAKNPVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L     +H + ++ +K+
Sbjct: 534 TLELARFLYPEFKNHRLNTLCKKF 557


>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
 gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
          Length = 1449

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 18/239 (7%)

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
                  D     +  + +    +E  G+    +I +       +  +++D     +   
Sbjct: 317 REKVKKEDTAEEKMVELHVHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYAVVHSYPA 376

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDI--QQWVQKLETIGSASFKIITDTMDAFH 403
             +        +     I       I +   +      +K++      F I T  +++  
Sbjct: 377 AFKTAKKLSTDEEKMKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIETTGLNSHT 436

Query: 404 SKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYLKK 455
           ++ I I    +      D   ++      +  H ++      +         +++     
Sbjct: 437 NEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQVANEPKIDKVIGKFVD 496

Query: 456 FFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FEDIMLMSYVLDSGRSSHDIASI 508
           F  +   + + HN  +D   + R       I  +    D + M+  L      + +  +
Sbjct: 497 FIGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL 553


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 17/144 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           LE      F + T  + A +   I +A   +   +  D           LS         
Sbjct: 416 LEEDTYVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDKFEAFANPHHPLSATTIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-------RGFED 488
           + D         +++   K++  ++  + + HN  +D   L+     +           D
Sbjct: 476 TDDMVRDAPDVVDVVRDFKEWIGDD--VLVAHNASFDMGFLNVAYKRLLKTEKAKNPVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            + ++  L     +H + ++ +K+
Sbjct: 534 TLELARFLYPEFKNHRLNTLCKKF 557


>gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 821

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 59/174 (33%), Gaps = 19/174 (10%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQD 438
            ++  +  +  F + T   D   +  I I    ++     D         + +    +Q 
Sbjct: 510 CKRDLSSTTVVFDLETTGFDPRVNHIIEIGAVKIENGKIIDRMDVFVNPGVPIPFRITQL 569

Query: 439 STGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISM-RGFE 487
           ++  +++       +E+L     F ++   + + HN  +D            I       
Sbjct: 570 TSIDDSMVMDAKGIEEVLPQFLDFAKDA--ILVAHNADFDYHFVSTKAKALNIPFSAPVI 627

Query: 488 DIMLMSYVLDSGRSSHDIASIAQ----KWLSYTRKEILKSRKSSIPIDKISDSQ 537
           D + +S +L    +   + ++A+    + L + R        + I + ++   +
Sbjct: 628 DTVALSRLLLPRLNRFKLDTVAKELKIELLHHHRAVDDAEATARIYLKELEILE 681


>gi|227327782|ref|ZP_03831806.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 374

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I +   +QQ   +       +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITSDIGLQQVCSQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-G 485
            +                         +    +E   K  H    D  V      ++   
Sbjct: 62  DWAP----------------------FQALLRDEQVTKFLHAGSEDLEVFLNAFETLPTP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
           F D   L +++      S+  A++   ++  T   + KS   +  + +    +  ++A  
Sbjct: 100 FIDTQILAAFLGKP--LSYGFAALVADYMGVT---LDKSESRTDWLARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L + + L
Sbjct: 155 DVFYLLPMAIQL 166


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 87/270 (32%), Gaps = 40/270 (14%)

Query: 312 KGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKI 371
             I    E  +       +  + +D        +  +    ++++ +    ++      I
Sbjct: 401 DAINSAKEYLQIAESWGHEAIAFTDHDGIYAYPEINEHAKNKKIKPIYGVEVDFIEEKPI 460

Query: 372 VNTKDIQQWVQK---LETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDD 419
             T   +  ++K   L+      F + T  +     K I IA         I    +  D
Sbjct: 461 YITNQKEDNLEKDFVLKEATYVVFDLETTGLSNVRDKIIEIAGVKIKKGNKIGEFQKFID 520

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-- 477
              K+     D++  T +   G+ T+ + +  +L   F  +  L + HN  +D   L   
Sbjct: 521 PQQKLTKTITDITNITDEMLQGQQTIDQVLPQFLA--FAKDCVL-VAHNASFDINFLKEK 577

Query: 478 ----RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533
               +  +  +   D M                +++Q++ S   K    S K      K+
Sbjct: 578 AKELKISLEPQPIIDTM----------------ALSQRYFSNLLKYF--SLKRLATFFKV 619

Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
                   A+ ++    ++++ +  +L   
Sbjct: 620 KLED-HHRALADATATAEIFIKMIDQLADP 648


>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1271

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 82/248 (33%), Gaps = 48/248 (19%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + + +   + N +DI+     LE      F + T  + +       I       KD 
Sbjct: 197 EMNMVDPALQIVRNIQDIE-----LEKGTYCVFDLETTGLSSRFDHI--IEFGGQIVKDR 249

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN--------EHFLKIGHNIKY 471
              K   +FI   V  S  +T    +T+E +   K F ++           + + HN  +
Sbjct: 250 ACIKSLQMFIKPPVALSAFTTELTGITEEHMKNAKSFADSIDEILDFIGDSILVAHNATF 309

Query: 472 DKLV----LHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           D       L R G    M    D + ++  + + R  + +  IA+ +             
Sbjct: 310 DYNFLNDELARIGRKPIMNPVIDTLDLARSMQADRKGYRLGQIARSYGIRY--------- 360

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLL---------RPKLIVEKLLHVYERLDKPM 576
                    D  V   A  ++ V+ Q ++ +           +L   +    + ++    
Sbjct: 361 ---------DEDVAHRADYDAEVLAQTYMNMLNDLKHIKNLQELQDMQTAESFRKVRVKH 411

Query: 577 IDVVSQME 584
           + V+++  
Sbjct: 412 VTVLAKNM 419


>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
          Length = 972

 Score = 40.8 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 415 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 474

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 532

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 533 LELARFLFPEMKNHRLNTLCKKM 555


>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
          Length = 970

 Score = 40.8 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 16/143 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQKW 512
           + ++  L     +H + ++ +K 
Sbjct: 531 LELARFLFPEMKNHRLNTLCKKM 553


>gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 248

 Score = 40.8 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 60/187 (32%), Gaps = 34/187 (18%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436
             +++++  ++    F   T  ++    + I I    L  +  T                
Sbjct: 5   YSEYLRRGSSMREIVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVH 64

Query: 437 QDSTGKNTLTKEIL-------SYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYG---I 481
            D+   + ++ E L         L +F E  +    + HN  +D       L R     I
Sbjct: 65  PDALAVHGISNEQLLDKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEI 124

Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKW------------------LSYTRKEILKS 523
           +     D + ++         + + ++ +++                  L+    E++  
Sbjct: 125 TSEHIVDTLALARRKHP-IGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIGG 183

Query: 524 RKSSIPI 530
           +++++ +
Sbjct: 184 KQTALGL 190


>gi|242223411|ref|XP_002477334.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723172|gb|EED77467.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1271

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 76/187 (40%), Gaps = 32/187 (17%)

Query: 432  SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIML 491
            +    +D   K    + ++  LK+  E +  L+  ++      VL      +      +L
Sbjct: 911  ADARLRDIQSKLDDKEALVDNLKELIEAKEGLQTENDA-----VLQAKNAEI-----TLL 960

Query: 492  MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI--DKISDSQVQEHAIENSNVI 549
             + V  +     D     ++ L    +E+ K+ + +I +  +++S +  Q + +E+    
Sbjct: 961  EARVQKAYAELED----ERQELGAQVEELRKAGQETIALYEERLSAADTQRYELEDLIAS 1016

Query: 550  LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT-GIQIDQDLLKQVSAEISKNLLS 608
            L     LR KL              P+  V +Q + T  ++ID + L++ +  + K +  
Sbjct: 1017 LD--EQLRAKLE-------------PLSPVTAQRQATSAVEIDNESLREQAQHLQKRIAV 1061

Query: 609  LEENIYD 615
            LE+ + +
Sbjct: 1062 LEDQLEE 1068


>gi|145536632|ref|XP_001454038.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421782|emb|CAK86641.1| unnamed protein product [Paramecium tetraurelia]
          Length = 529

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
            Y+++FF+N+   KI ++   D   L   Y I +  + D+ +++      +   D++ IA
Sbjct: 51  QYMREFFKNDAI-KIFYSGAQDLKWLKNEYQIVVNNYCDLKVLA------QKEPDLSLIA 103

Query: 510 --QKWLSYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
             +K+     + E  K  + S    +    +   +A  +   ++ L  +L  +   E+  
Sbjct: 104 LWKKYCGVQFEREDKKRLQKSDWFARPLTEEQLFYAALDCKYLVVLREILLQQYTEEEQK 163

Query: 567 HVYERLDKPMIDVV 580
            ++   D     ++
Sbjct: 164 SIHFSTDLKEPKLL 177


>gi|299133731|ref|ZP_07026925.1| ribonuclease D [Afipia sp. 1NLS2]
 gi|298591567|gb|EFI51768.1| ribonuclease D [Afipia sp. 1NLS2]
          Length = 382

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS-- 451
             T+ + A  ++       T+D +    F  ET +  L       S+ +  +   +    
Sbjct: 5   TSTEQLAAVCARLARHPFVTVDTE----FLRETTYYPLLCVVQLASSDEAVVVDALAEGI 60

Query: 452 YLKKFF---ENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVL 496
            LK FF    +E  LK+ H  + D  +V H  GI      D  + + VL
Sbjct: 61  DLKPFFDLMADEKVLKVFHAARQDIEIVWHLAGIVPHPVFDTQVAAMVL 109


>gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B]
 gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B]
          Length = 372

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 57/190 (30%), Gaps = 29/190 (15%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             + + + + + V ++      +        D F  +   + I+T DQ         T  
Sbjct: 4   EWVDSDRGLAEVVAQVIDGDFVAIDTEFRRRDTFWPEVALVQIATADQVWLIDPLPLTDT 63

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFE 487
             L+                      +  +     K+ H+   D  V     G+      
Sbjct: 64  GPLA----------------------ELLQKSTLTKVLHSAGEDLEVFQAWLGVLPSPLF 101

Query: 488 DIMLMSYVLDSGRSSHDIA-SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
           D    + +L      +    S A+   +  +  + K   +S  + +   S    +A ++ 
Sbjct: 102 DTQKAAALL-----GYGFGLSYAKLVEAVCQVSLDKDETNSDWLVRPLTSAQCRYAAQDV 156

Query: 547 NVILQLWLLL 556
             ++ ++  L
Sbjct: 157 TYLVDVYSRL 166


>gi|47201249|emb|CAF87424.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 175

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 44/134 (32%), Gaps = 16/134 (11%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K      P+ +           + FG+P +     EA+   A      +  G     I+ 
Sbjct: 44  KMEEKGTPDAVQE------ELLRLFGVPFLIAP-MEAEAQCAALDRADQTHGT----ITD 92

Query: 141 DKDLMQLVSPTTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           D D+              +    E      +    G+   K++ L  L G   D   G+ 
Sbjct: 93  DSDVWLFGGRHVYKNFFSQNKYVEYFQYSDLQNALGLDRTKLINLAYLLG--SDYTEGVA 150

Query: 198 GIGYKTAALLLQEY 211
           G+GY T   +L E+
Sbjct: 151 GVGYVTGMEVLNEF 164


>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 1216

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 70/241 (29%), Gaps = 18/241 (7%)

Query: 284 LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343
           L        D     +  +      +E  G+    +I +       +  +++D +   + 
Sbjct: 315 LEKENTKKEDAAEEKMVELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSY 374

Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI--QQWVQKLETIGSASFKIITDTMDA 401
               +        +     I       I +   +      +K++      F I T  +++
Sbjct: 375 PAAFKTAKKLSTDEEKMKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVFDIETTGLNS 434

Query: 402 FHSKPIAIAISTLDQK--DDTSFKVETIFIDLSVHTSQ------DSTGKNTLTKEILSYL 453
             ++ I I    +      D   ++      +  H ++      +         +++   
Sbjct: 435 HTNEIIEIGAVKIKSGRIMDRYSQLINPGRPIPYHITEITSITDEQVANEPKIDKVIGKF 494

Query: 454 KKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FEDIMLMSYVLDSGRSSHDIAS 507
             F  +   + + HN  +D   + R       I  +    D + M+  L      + +  
Sbjct: 495 VDFVGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGD 552

Query: 508 I 508
           +
Sbjct: 553 L 553


>gi|308177924|ref|YP_003917330.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745387|emb|CBT76359.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 227

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 20/113 (17%)

Query: 389 SASFKIITDTMDAFHSKPIAIAI--------------STLDQKDDTSFKVETIFIDLSVH 434
           +  F + T  +D   ++ +  ++                +D   +       +    +  
Sbjct: 9   AIGFDLETTGVDTNTARIVTASVVLLDAEGNVVNNREWLVDPGVEIPEAAAAVHGISTEK 68

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM 483
              +        +EIL+ LK  F +E    +  N  YD  VL+    RY +  
Sbjct: 69  ARAEGAPAKQSVEEILNLLK--FASEQAPIVAFNASYDFSVLYSEAVRYDLEP 119


>gi|170746940|ref|YP_001753200.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
 gi|170653462|gb|ACB22517.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
          Length = 395

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 66/195 (33%), Gaps = 29/195 (14%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T  ++Q   +L      +          ++ K   I ++  D           +  
Sbjct: 3   LITTTDALRQICTRLAEQPFVTVDTEFMRETTYYPKLCLIQMAAPDGTA-------VLVD 55

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFED 488
            L+                 L        +E  +K+ H+ + D +++    GI    F D
Sbjct: 56  PLAPGID-------------LDPFIALMADERTVKVFHSARQDLEIIWLIGGILPHPFFD 102

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
             + + V       +   S++ + L     + +I KS + +    +        +A+ + 
Sbjct: 103 TQVAAMVC-----GYG-DSVSYEQLVNDVAKAKIDKSSRFTDWSRRPLSEAQLTYALSDV 156

Query: 547 NVILQLWLLLRPKLI 561
             +++++ +L  +L+
Sbjct: 157 THLVKIYEVLVAELL 171


>gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1]
 gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus
           oeni PSU-1]
          Length = 1437

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
           T   + +  P+     +   +        +Y +      I    + L+      F I T 
Sbjct: 359 TDNADVQAFPEASASAKKTGVKAIYGLEANYVEDGEAIAINTNREILKDCQYTIFDIETT 418

Query: 398 TMDAFHSKPI---------AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
            + A + K I          + + T DQ  +  F +    I+L+   + D    +    E
Sbjct: 419 GLSAVNDKIIQLSAVKMKNGVVLDTFDQFINPGFPLSEQTINLTG-ITDDLVKNSKPEAE 477

Query: 449 ILSYLKKFFENEHFLKIGHN-IKYDK----LVLHRYGISMRG--FEDIMLMSYVLDSGRS 501
           +L   ++F+     +  GHN IK+D       L  + +        D + ++  L     
Sbjct: 478 VLKMFQQFYA--RTILAGHNVIKFDYGFVNHALAVHKLPKINTLVIDTLNLARWLYPNFG 535

Query: 502 SHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            + +  +++K+   L +  + I  S  + + +        + + +
Sbjct: 536 RYTLDFLSKKFSVNLEHHHRAIDDSTATGMLLHIFLKEAEENYGV 580


>gi|332882913|ref|ZP_08450520.1| 3'-5' exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679121|gb|EGJ52111.1| 3'-5' exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 206

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 11/123 (8%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           +   +K+  ++E+ LK+G +++ D   LH+ G    R F D  L  YV      +  I  
Sbjct: 86  VTESVKRLLQDENVLKVGLSLRDDFASLHKRGEFEPRAFLD--LQDYV-----RAFGIED 138

Query: 508 IAQK--WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           ++ +  + +   ++I K ++ +     +     + +A  ++   ++L+  L   L     
Sbjct: 139 MSLQKLYANIFGQKISKGQRLTNWEADVLTEGQKLYAATDAWACIRLYRELET-LKENND 197

Query: 566 LHV 568
             +
Sbjct: 198 YEL 200


>gi|195589974|ref|XP_002084724.1| GD14419 [Drosophila simulans]
 gi|194196733|gb|EDX10309.1| GD14419 [Drosophila simulans]
          Length = 267

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKY-DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           I   L K  E +   K+ H        +LHR+ IS+ G  D  +   ++   R  + +  
Sbjct: 100 IFLELAKILEADQPRKVIHYSHRIADHLLHRHRISLGGIFDTFVALCLISETRIPYTLPE 159

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLL 556
                     +++ ++ +S         +  Q  +  +   +   +   L
Sbjct: 160 AISLVFGLPMEKVTEACESQRNFTARPLTHSQMRYLAKMVQLQHIMHDRL 209


>gi|169622701|ref|XP_001804759.1| hypothetical protein SNOG_14577 [Phaeosphaeria nodorum SN15]
 gi|160704833|gb|EAT78117.2| hypothetical protein SNOG_14577 [Phaeosphaeria nodorum SN15]
          Length = 670

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 24/164 (14%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM- 145
            PEM      +     +   I  +    +EAD  +A        +G    ++S D DL+ 
Sbjct: 142 TPEMAR----MFIEELKHHNIQYVVAP-YEADSEMAYLERKGIIDG----VLSEDSDLLV 192

Query: 146 ----QLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC-----LQALTGDSIDNIPGI 196
                L++      D V   +I+  H      +            +  L+G   D +PGI
Sbjct: 193 FGVKCLITKLDKYGDCV---EINRNHFTACREVSFVGWSDADFRRMAILSG--CDYLPGI 247

Query: 197 PGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            G+G KTA  +L+++  +E ++  A    + K     +   + A
Sbjct: 248 GGLGLKTAHRMLRKHKTVERLVKAAQFDGKLKVPAGFMADFDQA 291


>gi|146294019|ref|YP_001184443.1| 3'-5' exonuclease [Shewanella putrefaciens CN-32]
 gi|145565709|gb|ABP76644.1| 3'-5' exonuclease [Shewanella putrefaciens CN-32]
          Length = 298

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 11/128 (8%)

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLD 497
              ++ L  E L  LK   E+E+ LK+G  ++ D   L R  GI++    D   +++VL 
Sbjct: 146 YLFQHALLAERLGLLKPVLEDENILKVGVGLRSDGQALTREWGINVTPRLD---LNWVLA 202

Query: 498 SGRSSHDIAS--IAQKWLSYTRKEILKSRKSSIP-IDKISDSQVQ-EHAIENSNVILQLW 553
              +  ++ +  +    L    K I K +K ++    ++  +  Q  +A  ++      +
Sbjct: 203 QLGAGKEMGTRQLVATLLQ---KRIDKPKKVTLSNWQQVPLTSTQIVYAALDALAAQHCF 259

Query: 554 LLLRPKLI 561
             L  KL 
Sbjct: 260 SELIDKLK 267


>gi|296119553|ref|ZP_06838111.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967436|gb|EFG80703.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 223

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 79/224 (35%), Gaps = 29/224 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAI------------STLDQKDDTSFKVETIFIDL 431
            +     SF + T +++   ++ +  A+            +  D   +       I    
Sbjct: 3   FDASKMLSFDLETTSVNTREARIVTSAVLRIAGPDVVKKETLADPGVEIPEAAAKIHGIT 62

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--GISMRG-FED 488
           +     +    + + +E ++ +K  + +E F  I +N  YD  VL       ++ G   D
Sbjct: 63  TEQARAEGRPHDEVLQETVNAIKAAW-DEGFTLIVYNAPYDLSVLRNLTGDFTVTGPVFD 121

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
                Y++D  +  +       +    T  ++ K  +  +     + +     A      
Sbjct: 122 P----YLIDRVKDRY-------RKGKRTLGDLCKEYRVELGNAHEATADALAAARIAWKQ 170

Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592
           + Q W  L+ ++  ++L+  ++ ++   + V  +    GI  D 
Sbjct: 171 VNQRWPELK-EMDSDELME-FQAVNFYELAVDQKKYFEGIGRDV 212


>gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 1433

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 13/150 (8%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ-----KDDTSFKVETIFIDLSVHTS 436
           + L+T    SF + T  +  ++   I      ++      K  T  K            +
Sbjct: 378 ESLQTGSYVSFDLETTGLSNYYDHIIEFGGVLIENGRVVKKMQTFIKAPVPVRPFIQELT 437

Query: 437 QDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYGISM--RGFEDI 489
             +         I   + +  E     + + HN ++D       L R G         D 
Sbjct: 438 NITDADLVNAPSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIGKEPIQNAVIDT 497

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519
           + +S  L   R S+ + SIA +++     E
Sbjct: 498 LDLSRALFDNRRSYRLGSIA-RFMRIGYDE 526


>gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str.
           C58]
          Length = 232

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 20/138 (14%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---------LSVHTSQDSTGK 442
           F   T  +++   + I I    L     T   +               L+VH   D   K
Sbjct: 6   FDTETTGLESKLDRVIEIGGIELINHFPTGRTLHLYISPEDRKVHPDALAVHGITDEFLK 65

Query: 443 NTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGISMRG---FEDIMLMSY 494
           +     E++  +++FF  +    + HN  +D         R GI         D + ++ 
Sbjct: 66  DKPKFAEVIDQIREFF--DGARWVAHNATFDMGFINAEFARLGIEPVSAELVTDTLSLAR 123

Query: 495 VLDSGRSSHDIASIAQKW 512
             +     + + ++ +++
Sbjct: 124 RKNP-MGPNSLDALCRRY 140


>gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
 gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
          Length = 1427

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 15/135 (11%)

Query: 390 ASFKIITDTMDAFHSKPIAI-AISTLDQK---DDTSFKVETIFIDLSV----HTSQDSTG 441
               I T  ++A   K I I A+   D K   + +SF    + I  S+      + D   
Sbjct: 416 VVLDIETTGLNAGTDKIIEIGAVRIKDGKYKDEFSSFINPHVPIPPSIVNLTGITDDMVS 475

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG--ISMR---GFEDIMLMSYVL 496
                 ++L    +F  +   + + HN ++D   + ++G   +++      D + ++  L
Sbjct: 476 NAPDEGDVLQRFMEFAGDA--VLVAHNAQFDMGFIRQHGQKYNLKFANPVLDTLTLARQL 533

Query: 497 DSGRSSHDIASIAQK 511
             G   + + ++A  
Sbjct: 534 FKGLKHYKLDTLAHH 548


>gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A]
          Length = 931

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 56/151 (37%), Gaps = 14/151 (9%)

Query: 381 VQKLETIGSASFKIITDTMDA-FHSKPIAIAISTLDQKD----DTSFKVETIFIDLSVHT 435
           +++++        + T    A    + I  A   ++        T+F      I   +  
Sbjct: 1   MEQMKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPAFIQE 60

Query: 436 SQDSTGKNTLTKEILSYLKKFFEN--EHFLKIGHNIKYDKLVLH----RYGISMRGFE-- 487
               + K+     +   +     N  E  + + HN+ +D   L     R GIS+   +  
Sbjct: 61  LTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKL 120

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW-LSYTR 517
           D + ++ ++  G  S+ +  ++ ++ L + +
Sbjct: 121 DTVELARIMYPGIDSYKLQDLSDEFNLGHDK 151


>gi|321452292|gb|EFX63714.1| hypothetical protein DAPPUDRAFT_66837 [Daphnia pulex]
          Length = 181

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           +  T+  +  ++ L +       +   +  ++      + IST                 
Sbjct: 43  VDTTEAFELLLRDLLSQMVIGVDLEHHSDRSYRGITCLMQIST----------------- 85

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDI 489
                  D         + L  L K F + + +KI      D + L R +GI +    D 
Sbjct: 86  ----DKTDYIIDTLKLWDHLQPLNKVFCDPNIVKIFQGADSDVIWLQRDFGIYVVNLFDT 141

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRK 518
              + +L  G     ++ + Q +      
Sbjct: 142 FQAASLL--GFQKKGLSFLLQHYCQVHVD 168


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGIS--MRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+        D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 375

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 60/199 (30%), Gaps = 30/199 (15%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQ 437
                          + T    +   +   I +         T   +      +     Q
Sbjct: 5   SLSDPASEQPLVFVDLETTGGSSAEHRITEIGVVEVGPLGVSTWTTLVNPGQSIPPFIQQ 64

Query: 438 DSTGKNTLTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FED 488
            +   + + ++    + L    FE  +  L + HN  +D+  L     R G +       
Sbjct: 65  LTGISDAMVRDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGYAFNPDVLC 124

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            + +S  L    + H + ++ ++                +P         +  A+ ++++
Sbjct: 125 TVRLSRALFPREARHGLDALIERH-------------GLVP-------SARHRALADADL 164

Query: 549 ILQLWLLLRPKLIVEKLLH 567
           + Q W  L   + +E+L  
Sbjct: 165 LWQFWRQLHEIVPLERLRD 183


>gi|313205201|ref|YP_004043858.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
 gi|312444517|gb|ADQ80873.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
          Length = 231

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 77/229 (33%), Gaps = 47/229 (20%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIIT----DTMDAFHSKPIAIAISTLDQKDDTSFKV 424
           T + +   IQ  + +L           T              + I+        D  F  
Sbjct: 24  TLVDDLSKIQPAIAELRKSKVVGIDTETKPSFTRGTYHKVSLVQIS------TLDHCFLF 77

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISM 483
               ID                    + L +F  +E+  KIG +++ D   L+++     
Sbjct: 78  RLNKIDFP------------------AALAEFLSDENIKKIGLSLRDDLNGLNKHHAFKP 119

Query: 484 RGFED--IMLMSY-VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540
               D   ++ SY +L+ G        + + +     K+I KS++ +   +     Q Q 
Sbjct: 120 ANCVDIQTIVQSYGILELG--------LQKIYAILFGKKISKSQRLTNWENPELTEQQQR 171

Query: 541 HAIENSNVILQLWLLL-------RPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +A  ++   LQ++L L       + ++      H  E+ +     + S+
Sbjct: 172 YAATDAWASLQIYLQLMSEKKLTKKQIDKILQQHALEQRELREQQMASR 220


>gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis C231]
 gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis I19]
          Length = 232

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET------------IF 428
           V   + +   SF + T + +   ++ ++ A+  +D       ++              + 
Sbjct: 8   VAVFDPLKVLSFDLETTSANPHEARIVSSALVRIDSNGAHPRELLADPGIEIPEEAAKVH 67

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--GISMRG- 485
              + +  +       + KE ++ +++ + +   L I +N  YD  VL +      + G 
Sbjct: 68  GITTEYAREHGRPHEEVLKETIAAIQQAWADGFTL-IVYNAAYDLTVLRKLTGDFVVTGP 126

Query: 486 FEDIMLMSYVLDSGRSSH-DIASIAQKW 512
             D  ++   LD  R     +  + Q +
Sbjct: 127 VFDPYVIDKALDKFRRGKRTLTDLCQHY 154


>gi|300121240|emb|CBK21621.2| unnamed protein product [Blastocystis hominis]
          Length = 500

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 61/177 (34%), Gaps = 23/177 (12%)

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
           +I++ + P       L       +++     I   + I   + +L++    S  +I  + 
Sbjct: 164 EIHNLEFPDWEVRGDLGVPPSCSLDDTVVEFIDTEEKIMDLIARLKSFRCISVSVIQHSY 223

Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459
            ++      I IS+ +        ++     ++ H S                L   F N
Sbjct: 224 RSYLGYCSMIMISSGE--------IDYAIDAIATHNSCW-------------KLNDLFTN 262

Query: 460 EHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515
              +K+  N     L L R +G+ M    D+ +   +LD  ++S     +  +   Y
Sbjct: 263 PSIVKVMFNAGDQLLWLQRDFGVFMVNLFDVQMALKLLDEKQTSFS-DVLMNRMNEY 318


>gi|260906565|ref|ZP_05914887.1| putative ribonuclease D [Brevibacterium linens BL2]
          Length = 384

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 9/147 (6%)

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENE--HFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490
           V   + + G   L  E+L+ L     +       + H++  D   L   G+      D  
Sbjct: 51  VQLRRANAGTYLLDSEVLADLSP-LNDAFAGAEWVIHSVTQDLPCLQERGMQPEVLFDTE 109

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           L + +L  G     +A++A++ L      + K   ++    +    +   +A  +  V+L
Sbjct: 110 LAARML--GWEKFGLAAVAERTLGVR---LAKEHSAADWSKRPLPKEWLNYAALDVEVLL 164

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMI 577
            +  +L   LI       + R +   +
Sbjct: 165 PIRDILHEALIEADKWE-FARQEFEHL 190


>gi|119902351|ref|XP_874985.2| PREDICTED: hypothetical protein [Bos taurus]
 gi|297479522|ref|XP_002690868.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|296483301|gb|DAA25416.1| hypothetical protein BOS_10707 [Bos taurus]
          Length = 662

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 293 LQMVLEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 333


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 1434

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 122/384 (31%), Gaps = 36/384 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----DTSFKVETI-FIDLSVHTS 436
           + L       F + T  + A ++  I +A   +   +      SF         L +  +
Sbjct: 413 RDLLDETYIVFDVETTGLSAVYNTIIELAAVKVKNGEIVDRFESFANPHEKLTPLIIDLT 472

Query: 437 QDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLHR------YGISMRGFEDI 489
             +        E+   LK F E       + HN  +D   ++       YG +     D 
Sbjct: 473 GITDDMVENAPEVDDVLKDFHEWIGDATLVAHNASFDMGFINAGFQKIGYGHATNPVIDT 532

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + +  +L     ++ + ++ +K+      E++           I D++   H +      
Sbjct: 533 LELGRLLYPTFKNYRLNTLCKKF----NIELVA------HHRAIYDAEATGHLLWKMVKD 582

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE-ISKNLLS 608
                +++   + E+      +  +P   ++      G++ +   L  +S       +  
Sbjct: 583 ATSQGIMKHFQLNEQTSKDDYKKQRPNHCIIFGKTKEGLK-NLYKLVSLSHINYFYRVPR 641

Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN--- 665
           + +++     +   + S    G++ F  +   S  + +         +++  +  ++   
Sbjct: 642 IPKSVLSEHRDGLMIGSACDNGEV-FDAMMQKSPEEVEKVAEFYDYLEVQPPSNYNHLVE 700

Query: 666 -PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT-------FYSLASTMTGRLASLE 717
             II++ L  + + K      D L   +       +           L ++  G      
Sbjct: 701 KEIIRDELALKDIIKKIIDLGDKLGKKVVATGNAHYLNEEDAIYRKILIASQGGANPLNR 760

Query: 718 PNLQNIPIKTDLGQKIRRAFISPP 741
            +L  +  ++        +F+   
Sbjct: 761 TSLPKVHFRSTDEMLSCFSFLPEE 784


>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 244

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 18/145 (12%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
             +    F I T  +D  + + I I    L     T    +          + ++   + 
Sbjct: 4   NKMRKIIFDIETTGLDKKNDRIIEIGAVELLDYSKTGRTFQVFLSPDGKKVNPEALKLHG 63

Query: 445 LTKEILS----------YLKKFFENEHFLKIGHNIKYDKLV----LHRYG---ISMRGFE 487
           +T E L               FF +++   I HN K+D       L R     +      
Sbjct: 64  ITDEFLRDKPFFSAIFPEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIV 123

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + ++       S +D+ S+ +++
Sbjct: 124 DTLSIARRKHPS-SRNDLNSLCKRY 147


>gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 960

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 28/159 (17%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA-------------ISTLDQ 416
           ++ NT++       LE +   +  I T  +++   + I IA             +S +  
Sbjct: 7   EVKNTENFNNLP--LEQLEFVAIDIETTGLNSEWDEIIQIAGMRFKGEEVVNQFVSLVKP 64

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
           K      +E +      H S          KE+L     F  +   + +GHNI +D   L
Sbjct: 65  KGKVPKFIEHL-----THISPQELKTAPPIKEVLKDFCNFIGD--SILVGHNIGFDFNFL 117

Query: 477 HRY-----GISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509
           +++     G  +     D   +  +     + H ++++ 
Sbjct: 118 NQFIVDNGGFPISNMHWDTAEIGRIYLPFTTDHKLSTLV 156


>gi|147902392|ref|NP_001084849.1| exonuclease 3'-5' domain-containing protein 1 [Xenopus laevis]
 gi|82237110|sp|Q6NRD5|EXD1_XENLA RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
           AltName: Full=Exonuclease 3'-5' domain-like-containing
           protein 1
 gi|47124003|gb|AAH70821.1| Exdl1 protein [Xenopus laevis]
          Length = 444

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSS----HDIAS 507
           L+   E++  LK+ H+ ++   +L H+YGI +    D  +    L S  +     H   +
Sbjct: 166 LQMVLEDKGILKVIHDCRWLGDILSHQYGIILNNVFDTQVGDVYLFSMETGGFLPHGTRT 225

Query: 508 IAQKWLSY 515
           + +  + +
Sbjct: 226 LEECLIHH 233


>gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
 gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 231

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 60/183 (32%), Gaps = 36/183 (19%)

Query: 392 FKIITDTMDAFHSK-PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               T  +D       + I           + +    +I+       ++   + L+ E L
Sbjct: 6   LDTETTGLDPLRGDRLVEIG-CVEIYNRMPTGQAFHRYINPERDMPAEAFAVHGLSAEFL 64

Query: 451 SYLKKFFE---NE------HFLKIGHNIKYDKLVLH-------RYGISMRGFEDIMLMS- 493
           +  K  F    +E          + HN  +D   L+       R  I      D +L++ 
Sbjct: 65  AD-KPLFAQVVDEFLDFIGDAPLVIHNASFDAGFLNAELARLSRAAIPRERLVDTLLLAR 123

Query: 494 ----------------YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
                           Y +D+ R +   A +  + L+    +++ +R+S + + ++   +
Sbjct: 124 RKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILAEVPSER 183

Query: 538 VQE 540
             +
Sbjct: 184 AGQ 186


>gi|289740869|gb|ADD19182.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 568

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 85/210 (40%), Gaps = 32/210 (15%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETI----GSASFKIITDTMDAFHSKPIAIAISTLD 415
           Q P+       I N  D Q+ V  L++         F     T+     +P+A+     +
Sbjct: 46  QNPLKRKHVVLIQNINDCQKVVNILKSHCSDYKVLGFDCEWVTVS-GSRRPVALLQLCSN 104

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
           +     F++  I                   ++I   L+    +E  +K+G +  YD   
Sbjct: 105 RGYCALFRLCCI-------------------RQIPKSLRDLLADEEVIKVGVDPGYDAQK 145

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
           L + YG+ +    D+  ++ ++  GR    +A ++   L  T  +  +   S+     ++
Sbjct: 146 LAQDYGVGVASTFDLRYLATMV--GRKPEGLAKLSLSVLKVTLDKHWRLSCSNWEAKDLT 203

Query: 535 DSQVQEHAIENSNVILQLWLLL----RPKL 560
           + Q+ E+A  ++ V ++++ +L    +P+L
Sbjct: 204 EKQI-EYAANDAFVAVEIFKILAREFKPRL 232


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 49/138 (35%), Gaps = 14/138 (10%)

Query: 388 GSASFKIITDTMDAFHSKP---IAIAISTLDQKDDTSFKVETIFIDLSV----HTSQDST 440
                 + T   D   ++    +A+     ++  + S  ++  F+   +      ++D  
Sbjct: 33  SYVVIDLETTGFDPKCNEILEIVALRYENNEKIAEFSKLIKVSFLPSFITEFTGINEDMI 92

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMR-----GFEDIMLMSY 494
                  + L     F ++   L + HN  +D   L+  +   +       F D M +S 
Sbjct: 93  KNCNDISQTLKEFDDFLKSGDIL-VAHNAHFDINFLYDNFMCYLNKPFSFDFVDTMRLSK 151

Query: 495 VLDSGRSSHDIASIAQKW 512
           +++   + H +  +  ++
Sbjct: 152 LINQELAHHRLKDLCNQY 169


>gi|170742646|ref|YP_001771301.1| ribonuclease D [Methylobacterium sp. 4-46]
 gi|168196920|gb|ACA18867.1| ribonuclease D [Methylobacterium sp. 4-46]
          Length = 394

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 68/197 (34%), Gaps = 29/197 (14%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +T D+      L T    +          ++ K   I I+  D           + 
Sbjct: 2   KLITSTDDLTSACAHLSTQPFVTVDTEFMRETTYYPKLCLIQIAAPDG-------TTALV 54

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFE 487
             L+                 L+       +E  LK+ H+ + D +++  + G+  + F 
Sbjct: 55  DPLAPGID-------------LAPFFALMGDEGVLKVFHSARQDLEIIWLQGGLLPQPFF 101

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           D  + + V       +   S++ + L     + ++ KS + +    +        +A+ +
Sbjct: 102 DTQVAAMVC-----GYG-DSVSYEQLVNDVAKAKVDKSSRFTDWSRRPLSEAQLTYALSD 155

Query: 546 SNVILQLWLLLRPKLIV 562
              +++++  L  +L+ 
Sbjct: 156 VTHLIKVYEALARQLLA 172


>gi|321470528|gb|EFX81504.1| hypothetical protein DAPPUDRAFT_303477 [Daphnia pulex]
          Length = 812

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 82/218 (37%), Gaps = 43/218 (19%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVL---DSGRSSH---- 503
           L     ++  +K+ H+ K D   L   G +++     D      V+   ++GR+ H    
Sbjct: 409 LANLIISKEIVKVCHDCKNDSAAL-NLGWNVKLENVFDTQAAHAVVQLQETGRAVHKVKT 467

Query: 504 -DIASIAQKWL--SYTRKEILK---SRKSSIPIDKISDSQVQEHAIENS----------- 546
             + ++ + +   +   KE++K    R       +     +  +A  +            
Sbjct: 468 TSLNAMCENYDLPTNPFKELVKTIYKRDQRFWARRPLTRDMILYAAYDVMPLVPHLYDLL 527

Query: 547 -NVILQLWLLLRPKLIVEKLLHVYE-----------RLDKPMIDV---VSQMEITGIQID 591
            N +   +  L  +L  E LL + +           +++  ++++   ++ ++  G+ + 
Sbjct: 528 NNTVKPEFRPLLEELCAENLLALLQPDEVKRSKKERKMEMEVLELRQKLAAVQGKGVVLS 587

Query: 592 QDLLKQVSA-EISKNLLSLEENIYDLSGEKFNLSSPKQ 628
              ++ +   ++++      +  Y ++ +   L S +Q
Sbjct: 588 NREIRLLRHLDLTEEEREKLDGSYKVAKKLEKLQSKRQ 625


>gi|321478345|gb|EFX89302.1| hypothetical protein DAPPUDRAFT_310282 [Daphnia pulex]
          Length = 438

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHD 504
           L   F N+  +K+ H+ ++      H+YG+ +    D  + + V+   ++ H 
Sbjct: 238 LANIFTNDKVIKVIHDCRFMSDAFVHQYGVKLNNVFDTQVGALVV--VKNKHG 288


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 112/348 (32%), Gaps = 42/348 (12%)

Query: 244 RKLVMLR-TDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANIEP 301
           RK+V    TD   +I +  L  +  +  R+I  +K   + K+   V   +Y  +   +  
Sbjct: 251 RKIVTFYITDYTSSITV-KLFPKPKDTERVIEEIKEGLYCKIRGEVVNDSYAREIVIMAR 309

Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK---- 357
            ++ +N  E   IA E  ++     K S    ++   S I          +         
Sbjct: 310 DIVKLNKIEKMDIAEEKRVELHLHTKMSAMDGMNSAESLIKRAAKWGHKAVAITDHGVVQ 369

Query: 358 -LSQYPINNDSYTKIVNTKDIQQWVQ-----------KLETIGSASFKIITDTMDAFHSK 405
              +       Y   +        V            +        F I T      + K
Sbjct: 370 AYPEAMEAAKKYNIKIIYGVEGYLVDDGIPIAINAGHRTLEDSYVVFDIETTGFSNKNDK 429

Query: 406 PIAIAISTLDQKDDTSFKVETIFID--------LSVHTSQDSTGKNTL-TKEILSYLKKF 456
            I I  +   ++     K  T            + +    D   K+    +E+L     F
Sbjct: 430 IIEIG-AVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMVKDAPKIEEVLPKFIDF 488

Query: 457 FENEHFLKIGHNIKYDKLVLHR----YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511
            E+   + + HN  +D   + +    +GI       D + +   L      + +  +A+ 
Sbjct: 489 IED--SILVAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLCKFLYPELKRYKLNVVAKH 546

Query: 512 ----WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
                L++ R   ++  K++  I   +   +++  I N N++ + +  
Sbjct: 547 LGIPLLNHHRA--VEDAKTTGDILLKAFEDLKDKEIMNLNMLNEEYFK 592


>gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
 gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
          Length = 414

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 7/124 (5%)

Query: 452 YLKKFFEN-EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
            L    E  E    + H    D   L   G++     D  L   +  +G     + ++ +
Sbjct: 89  RLDPLVEALEGTEWVLHAASQDLPCLAELGLTPSALFDTELAGRL--AGFERVALGTLVE 146

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVY 569
             L Y  +   K   ++    +   +    +A  +  +++QL  +L  +L  + KL    
Sbjct: 147 LLLGYRLE---KGHGAADWSRRPLPADWLNYAALDVELLVQLRDVLEEELRQQGKLEWAL 203

Query: 570 ERLD 573
           E  D
Sbjct: 204 EEFD 207


>gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 375

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 60/194 (30%), Gaps = 30/194 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
                     + T        +   I +         T   +      +     Q +   
Sbjct: 10  ASEQPLVFVDLETTGGSLADHRITEIGVVEIGPLGVSTWTSLVNPGQAIPPFIQQLTGIS 69

Query: 443 NTLTKEI--LSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMS 493
           + + ++    + L    FE  +  L + HN  +D+  L     R G++        + +S
Sbjct: 70  DAMVRDAPTFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNPDVLCTVRLS 129

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
             L    S H + ++ ++                +P         +  A+ +++++ Q W
Sbjct: 130 RALFPRESRHGLDALIERH-------------GLVP-------AARHRALADADLLWQFW 169

Query: 554 LLLRPKLIVEKLLH 567
             L   + +E+L  
Sbjct: 170 RQLHDIVPLERLRE 183


>gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365]
 gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365]
          Length = 400

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 57/172 (33%), Gaps = 24/172 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F     +   F ++   + +S  D +      ++++ +D                  +L 
Sbjct: 32  FDFEFASDGRFLAELALVQVSWGDPEAPEIALIDSVAVD---------------PTPVL- 75

Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
              +   +   + + H  K D  +L  R+ I    F D  + +  +           +  
Sbjct: 76  ---RLIGDPAVVSVAHAAKQDLGILAARFDIFAENFWDTQIAAAFVGMAEQI-GYGKLVD 131

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             L     ++ K+ + +  +++        +A ++   + ++W  L  +L  
Sbjct: 132 ALLGV---QLDKASQFTKWLERPLSPAQLRYAADDVRYLPRVWAHLSQRLDE 180


>gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 284

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 74/223 (33%), Gaps = 42/223 (18%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGRSSH--DI 505
              K    +    K   N  +++  L ++    +    +   M+     +S R      +
Sbjct: 62  ETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMV-----NSMRIGLPASL 116

Query: 506 ASIAQ----------------KWLSYTRKE--ILKSRKSSIPIDKISD-SQVQEHAIENS 546
             + +                ++ S   K   +   R  ++P   +    Q  ++ I + 
Sbjct: 117 DKVGEVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDV 176

Query: 547 NVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604
            V + +   ++  P   +E+   V+++           +   GI++ + L+   +    +
Sbjct: 177 EVEMAIANKIKDFPVTAIEQTYWVFDQ----------HINDRGIKLSKSLMLGANVLDKQ 226

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
           +   L +    ++G + N +SP QL   L  +         K 
Sbjct: 227 SKEELLKQAKHITGLE-NPNSPTQLLAWLKDEQGLDIPNLQKK 268


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGI--SMRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+  +     D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLAKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 415 LAEETYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGI 474

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGI--SMRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+  +     D 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLAKTNNPVIDT 532

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 533 LELARFLFPEMKNHRLNTMCKK 554


>gi|148245877|gb|ABQ52900.1| DNA polymerase [Crocosphaera watsonii WH 0002]
          Length = 119

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI       
Sbjct: 1   AKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQEHFGGNI------- 53

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  +    +IDR  T + S F S S Q   +N  +  +K  L   Q +++  
Sbjct: 54  ------TLEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEGKKESLIEPQIITEIE 103


>gi|319427358|gb|ADV55432.1| 3'-5' exonuclease [Shewanella putrefaciens 200]
          Length = 301

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 11/128 (8%)

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLD 497
              ++ L  E L  LK   E+E+ LK+G  ++ D   L R  GI++    D   +++VL 
Sbjct: 146 YLFQHALLDEQLGLLKPVLEDENILKVGVGLRSDGQALTREWGINVTPRLD---LNWVLA 202

Query: 498 SGRSSHDIAS--IAQKWLSYTRKEILKSRKSSIP-IDKISDSQVQ-EHAIENSNVILQLW 553
              +  ++ +  +    L    K I K +K ++    ++  +  Q  +A  ++      +
Sbjct: 203 QLGAGKEMGTRQLVATLLQ---KRIDKPKKVTLSNWQQVPLTSTQIVYAALDALAAQHCF 259

Query: 554 LLLRPKLI 561
             L  KL 
Sbjct: 260 SELIDKLK 267


>gi|50553030|ref|XP_503925.1| YALI0E14014p [Yarrowia lipolytica]
 gi|49649794|emb|CAG79518.1| YALI0E14014p [Yarrowia lipolytica]
          Length = 546

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 87/248 (35%), Gaps = 51/248 (20%)

Query: 8   FLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             VDG +++++A + +     L+R  D  P   +      L +               ++
Sbjct: 27  LAVDGFAWLHKAAFGSAEDLALNRPTD-RPQQWVMRKVEFLKR---------CGVDVLIV 76

Query: 65  FD-----YPAVT--FRNEIYPDYK------ANRPKIPEM--LLPQLPLVR--------LA 101
           FD         T   R+ +            +R +  E   L  +   +           
Sbjct: 77  FDGGALPSKRGTDEKRHALRDQAHKEALALMSRGRRSEAVNLFQKATRITQEMVHQLTEL 136

Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161
            ++  IP +    +EAD   A   Y+ EK G+A  IIS D DL+   +            
Sbjct: 137 LKSQRIPFVVAP-YEAD---AQLVYL-EKAGYATGIISEDSDLVVYGAQMLVTKLDPSGG 191

Query: 162 KIDIEHVI------KKWG--IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN 213
            + ++          + G  +P E +  +  L+G   D   G+P +G K AA  ++ +  
Sbjct: 192 CVTVDGSRISSCSDLELGSEVPLEYLRYMAILSG--CDYCDGVPNVGPKRAARYIRRWQT 249

Query: 214 LENILINA 221
            E I+   
Sbjct: 250 PEAIIKAL 257


>gi|116493923|ref|YP_805657.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Lactobacillus casei ATCC 334]
 gi|116104073|gb|ABJ69215.1| 3'-5' exonuclease and CRISPR-associated protein cas2 [Lactobacillus
           casei ATCC 334]
          Length = 301

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 33/189 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID----------LSV 433
            E +   +  I T  +DA     IAI  +      + + K  T+             L+ 
Sbjct: 125 AEGVPFVALDIETTGLDAERDAIIAIG-AVKGPSVNETEKFTTLVNPRRPLPSTVAKLTG 183

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMS 493
            ++++         E +  L+ F        +G+N+++D   L   G          L S
Sbjct: 184 LSAEELVANGISLSEAVQALRDF--TGSLPLVGYNLRFDMGFLSAAGRE------TGLTS 235

Query: 494 YVLDSGRSSHDIASIAQ---KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
           +    G  + D+  + +   ++L   +   +      +   +I + Q   HA+ ++   +
Sbjct: 236 F----GNQTFDLLPLVKKSSRFLDNYKLSTV------LAHYQIDNEQ-PHHALSDATATM 284

Query: 551 QLWLLLRPK 559
            L   L  K
Sbjct: 285 ALADKLIKK 293


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           L       F + T  + A +   I +A   +   +  D           LS         
Sbjct: 413 LAEETYVVFDVETTGLSAVYDTVIELAAVKIKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYGI--SMRGFEDI 489
           + D         E+    +++  +     + HN  +D         + G+  +     D 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLAKTNNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
 gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
          Length = 242

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 64/226 (28%), Gaps = 36/226 (15%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS----------VHTSQDSTG 441
           F   T  +D    + I I    L     T                         S +   
Sbjct: 6   FDTETTGLDNTIDRVIEIGGVELWNHIPTGKTYHQYIRPAGRKVDPAAFDVHGISDEFLL 65

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------RY-GISMRGFEDIMLMSY 494
              L +EI      FF +     I HN  +D   L+      R+  I      D + M+ 
Sbjct: 66  DKPLFEEIADEFVAFFSDAKL--IAHNANFDIGFLNAELQRLRHPPIEPSLVIDTLAMAR 123

Query: 495 --------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
                    LD+  S   + +         +  + L+    E++  R+SS+ +   +D  
Sbjct: 124 RKFPMAPASLDALCSRFAVDTSKREKHGALLDSELLADVYIELIGGRQSSLGLIVEADET 183

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583
                      +      L P+L  ++       ++    + +   
Sbjct: 184 YASGEAGGPVAVSAREAPLAPRLSEDEASRHLAFVESLGDEALWWR 229


>gi|77459288|ref|YP_348795.1| excinuclease ABC subunit C [Pseudomonas fluorescens Pf0-1]
 gi|92058695|sp|Q3KBQ0|UVRC_PSEPF RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|77383291|gb|ABA74804.1| excinuclease uvrABC system protein C [Pseudomonas fluorescens
           Pf0-1]
          Length = 607

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 25/165 (15%)

Query: 81  KANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE-KEGFA 134
           K    K+P++L       QL + R       +P         D I+      A  K GF 
Sbjct: 453 KEGEGKLPDILLVDGGKGQLSMARDVLNELAVP---------DLILLGVAKGATRKAGFE 503

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
              ++   +   L   +  L+    ++  D  H   ++ I   +    +         + 
Sbjct: 504 TLYLNDAANEFTLRGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTSTLE 555

Query: 195 GIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
           G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 556 GVAGVGPTRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAESI 600


>gi|22126121|ref|NP_669544.1| ribonuclease D [Yersinia pestis KIM 10]
 gi|45441720|ref|NP_993259.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001]
 gi|108807454|ref|YP_651370.1| ribonuclease D [Yersinia pestis Antiqua]
 gi|108811715|ref|YP_647482.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|145598343|ref|YP_001162419.1| ribonuclease D [Yersinia pestis Pestoides F]
 gi|167469552|ref|ZP_02334256.1| ribonuclease D [Yersinia pestis FV-1]
 gi|186895427|ref|YP_001872539.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+]
 gi|21959080|gb|AAM85795.1|AE013826_7 RNase D [Yersinia pestis KIM 10]
 gi|45436582|gb|AAS62136.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001]
 gi|108775363|gb|ABG17882.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|108779367|gb|ABG13425.1| ribonuclease D [Yersinia pestis Antiqua]
 gi|145210039|gb|ABP39446.1| ribonuclease D [Yersinia pestis Pestoides F]
 gi|186698453|gb|ACC89082.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+]
          Length = 386

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 69/242 (28%), Gaps = 35/242 (14%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           +    +    +  +Y  I     +QQ  ++  T    +          ++ +   I +  
Sbjct: 2   KDNGYNDQENDVLNYQLITTNNALQQVCEQARTHAHIALDTEFVRTRTYYPQLGLIQLYD 61

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +Q         T +                         +   ++ + +K  H    D 
Sbjct: 62  GEQLSLIDPLPITEWQP----------------------FRALLQDLNVVKYLHAGSEDL 99

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPID 531
            V    +        D  +++    SGRS S   A +  ++      E+ KS   +  I 
Sbjct: 100 EVFLNAFDQMPTPMIDTQVLA--AFSGRSLSCGFAMLVAEFEGV---ELDKSESRTDWIA 154

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +    +  ++A  +   +L L   L              R+D    + +         +D
Sbjct: 155 RPLSEKQCDYAAADVFYLLPLAAKLVEATEAAG------RMDAAKDECLLLCRRRSETLD 208

Query: 592 QD 593
            +
Sbjct: 209 PE 210


>gi|294943277|ref|XP_002783816.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
 gi|239896568|gb|EER15612.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
          Length = 350

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
             +   +   +K+ H    D   L R     +    D    + VL+ G   + + ++   
Sbjct: 36  FNRITSDPGIVKVLHGADMDVQWLQRDLSAYLCNMFDTGQAARVLELG-GGYSLKNLLDF 94

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561
           +  Y      K+ + +    +    +++++A ++ + +L ++  +R +L+
Sbjct: 95  YCGYKAD---KANQLADWRQRPLSERMKQYARDDVHYLLYIYDRMRAQLL 141


>gi|114767452|ref|ZP_01446239.1| ribonuclease D [Pelagibaca bermudensis HTCC2601]
 gi|114540462|gb|EAU43543.1| ribonuclease D [Roseovarius sp. HTCC2601]
          Length = 385

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 67/195 (34%), Gaps = 24/195 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +T+D+  +  +  T    +          ++SK   I ++   Q D+ +  V+   
Sbjct: 2   KTITSTEDLAAFCSEAATAPYVTVDTEFLRERTYYSKLCLIQLAYPGQGDENAVLVD--- 58

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFE 487
             L+   S +   +              F N + +K+ H  + D  +    +G+      
Sbjct: 59  -PLAGELSLEPLLEL-------------FRNTNVVKVFHAARQDLEIFFIDHGVIPDPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENS 546
           D  + + V   G       ++ ++      K+ L          +   +  Q ++A+ + 
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVKR----IAKQGLDKSSRFTDWSRRPLTDAQKKYALADV 159

Query: 547 NVILQLWLLLRPKLI 561
             +  ++  L  +L 
Sbjct: 160 THLRVIYEYLAAELE 174


>gi|118394996|ref|XP_001029855.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89284128|gb|EAR82192.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1146

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 104/317 (32%), Gaps = 48/317 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           +         +        + + + I+I                     +++ Q+     
Sbjct: 442 IPKFKHVGVDLEGALRKEGYVQLVQISIQLKPDFSQIFI--------FDIYSIQNIKEDK 493

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGFEDIMLMSYVLDSGRSS 502
            L K +++ ++   ++ + +KI H+ + D L LH +  +  +   D   +          
Sbjct: 494 ILEKNMINCIQNIMQDVNIIKIFHDCRRDSLALHLFMKACPKNVFDTAAI---------- 543

Query: 503 HDIASIAQKWLSYTRKEILK---SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           H      +K++ +T+ +          +I     S  ++++  + +   I      +   
Sbjct: 544 HAFKLHVEKYIDFTKNKFKGLNTKEDKNILQLLKSLEELKQPGLNDILQIYNTSHGI--N 601

Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
           L+ + +   ++  + P +  + +       ID + L + SA   ++L+            
Sbjct: 602 LLKDSMHQKFQ--EMPSLYFLQR------PIDPEFL-EYSARDVEDLIEAYH-------- 644

Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679
            F + + KQ     F     P   +    QW ++           N  IK   ++  L+ 
Sbjct: 645 -FMIDTVKQTCKQAF-----PKANEQIVMQWNSSKMQNLPDCAEINKYIKEYFQYLGLNN 698

Query: 680 IKSTY-ADSLPNHINKR 695
               + A+      N R
Sbjct: 699 TMDCFEAEWKQKQSNTR 715


>gi|294815713|ref|ZP_06774356.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294328312|gb|EFG09955.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 251

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 62/231 (26%), Gaps = 25/231 (10%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAI-------------STLDQKDDTSFKVETIFIDL 431
                  F + T   D   ++ +  A+                D       +   I    
Sbjct: 15  HGEPLVGFDLETTGTDPREARIVTAAVVEARAGEPVRRRTWLADPGVRIPAQASAIHGIT 74

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRGFE 487
           S   + +      +  E+ + L  ++       + +N  +D  +L     RYG  +    
Sbjct: 75  SERAAAEGRPAREVADEVAAELCGYWAR-GVPVVAYNAAFDLSLLAAEIRRYG--LPSLS 131

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L           + I     ++    R     S +  +P++   D+     A     
Sbjct: 132 D-RLGGRPTGPVIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPLEDAHDATADALAAVRVA 190

Query: 548 VILQLWL----LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             L L       L P  + E+ +  Y          + +       +D   
Sbjct: 191 GALALRHPSVAALDPARLHERQIVWYAEWAADFQAFLRRKGEADAVVDPHW 241


>gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 241

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 70/209 (33%), Gaps = 39/209 (18%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH-----------TSQDST 440
           F   T  +D+   + I +    L  +  T                         ++ D  
Sbjct: 6   FDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQAVHGISAADLA 65

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYG---ISMRGFEDIMLMS 493
           GK T  + +  +L   F +   L + HN  +D   L+    R G   I      D + ++
Sbjct: 66  GKPTFAEIVEEWLA--FTDGAKL-VAHNATFDIGFLNVEFGRLGHPVIDPGLVVDTLALA 122

Query: 494 Y--------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPIDKISDS 536
                     LD+    + I +         +  + L+    E++  +++++ +D  +  
Sbjct: 123 RRKHPMGPNSLDALCRRYGIDNAKRTKHGALLDSELLAEVYIELIGGKQAALILDSATAP 182

Query: 537 QVQEHAIENSNVILQLWL-LLRPKLIVEK 564
             +   + +  +I  +    L P+L   +
Sbjct: 183 AQRGENVRHIEIIAAVRPGPLLPRLTEAE 211


>gi|166711789|ref|ZP_02242996.1| ribonuclease D [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 363

 Score = 40.4 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 64/179 (35%), Gaps = 11/179 (6%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++P  I + T   ++ T +    +   + +   ++    + L   + + LK++      +
Sbjct: 18  ARPARIGLDTEFIRERTYWPQLAL---VQMAIGEEILLIDPLIPSMNAALKEWLTATDIV 74

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+   D +      G+  R   D  + +       +        QK +      +L 
Sbjct: 75  KVMHSASEDLVTFKCACGVLPRPLFDTQIAA-----ALAGVGGGMGYQKLVQEVTGTLLT 129

Query: 523 SRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDV 579
             +  S  + +       E+A ++   +  +   L  +L    +L  + E  ++ +  V
Sbjct: 130 KGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWLAEDAERLLATV 188


>gi|47230549|emb|CAF99742.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 866

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 27/186 (14%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FG+P +     EA+   A         G     I+ D D+              
Sbjct: 678 QELLRLFGVPFLIAP-MEAEAQCAALDRADHTHGT----ITDDSDVWLFGGRHVYKNFFS 732

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY--GN 213
           +    E      +    G+   K++ L  L G   D   G+ G+GY T   +L E+    
Sbjct: 733 QNKYVEYFQYSDLQNALGLDRTKLINLAYLLG--SDYTEGVAGVGYVTGMEVLNEFTGPG 790

Query: 214 LENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED--CNGPR 271
           LE ++            +   E  E     ++LV    D  +   L  L L     N   
Sbjct: 791 LEPLVQ---------FSKWWSEAQEK----KRLVADPGDTKVKKKLRELKLHPGFPNPAV 837

Query: 272 LISFLK 277
             ++L+
Sbjct: 838 AQAYLQ 843


>gi|1589173|prf||2210342A myosin:SUBUNIT=heavy chain
          Length = 2241

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 83/226 (36%), Gaps = 27/226 (11%)

Query: 599  SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK-TTAQDL 657
            S E SK L  L +    L      +S  KQL D +F   K  +  K +  + K  + +  
Sbjct: 1688 STEQSKQLNQLIQENQQLKSVTNEIS--KQLDDAVFENQKINNTIKEQEIKSKRMSVELQ 1745

Query: 658  EQINCGDNPIIKNILE-WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            + I+ G    I+ +     QL + + +  D L   I +  +   T   L       + S 
Sbjct: 1746 QHIDEGKQQEIQQLQSTIAQLKQQQQSETDRLEKEIQQMKRERETQMKL-------VEST 1798

Query: 717  EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            + N   +  + +L +             +   DY + E   LA +A    L     +   
Sbjct: 1799 KLNYHMLEDRMELYR-----------NVMEIIDYKETEWEKLARLAGCKELDTKLLSDFL 1847

Query: 777  I-----HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            +     H  + ++++   I+   P  R  +K I + II  I  F +
Sbjct: 1848 LSCKLEHTSLGSQMWFHQIDYWCPYERDSSKGIFYGIIRSIVDFTI 1893


>gi|148245887|gb|ABQ52905.1| DNA polymerase [Crocosphaera watsonii WH 0002]
          Length = 119

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI       
Sbjct: 1   AKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQEHFGGNI------- 53

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  +    +IDR  T + S F S S Q   +N  +  +K  L   Q +++  
Sbjct: 54  ------TLEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEEKESLIEPQIITEIE 103


>gi|74000167|ref|XP_535437.2| PREDICTED: similar to CG4051-PA [Canis familiaris]
          Length = 569

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 200 LQMVLEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 240


>gi|1150766|gb|AAA85186.1| myosin heavy chain [Dictyostelium discoideum]
          Length = 2245

 Score = 40.4 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 83/226 (36%), Gaps = 27/226 (11%)

Query: 599  SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK-TTAQDL 657
            S E SK L  L +    L      +S  KQL D +F   K  +  K +  + K  + +  
Sbjct: 1690 STEQSKQLNQLIQENQQLKSVTNEIS--KQLDDAVFENQKINNTIKEQEIKSKRMSVELQ 1747

Query: 658  EQINCGDNPIIKNILE-WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            + I+ G    I+ +     QL + + +  D L   I +  +   T   L       + S 
Sbjct: 1748 QHIDEGKQQEIQQLQSTIAQLKQQQQSETDRLEKEIQQMKRERETQMKL-------VEST 1800

Query: 717  EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            + N   +  + +L +             +   DY + E   LA +A    L     +   
Sbjct: 1801 KLNYHMLEDRMELYR-----------NVMEIIDYKETEWEKLARLAGCKELDTKLLSDFL 1849

Query: 777  I-----HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            +     H  + ++++   I+   P  R  +K I + II  I  F +
Sbjct: 1850 LSCKLEHTSLGSQMWFHQIDYWCPYERDSSKGIFYGIIRSIVDFTI 1895


>gi|258570519|ref|XP_002544063.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237904333|gb|EEP78734.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 448

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLM 492
             LK  FE+   LK   +++ D   L+  YG++++G EDI LM
Sbjct: 281 DTLKTIFESPEILKGIFDVRNDSNALYFLYGVALQGVEDIQLM 323


>gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 231

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 20/138 (14%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFID---------LSVHTSQDSTG 441
           F   T   D  +  + + I    L  + +T       F                S     
Sbjct: 6   FDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPERDMPAAAEAVHGLSSQFLS 65

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSY 494
              L    +  L  FF +     I HN  +D       L R G   + M      + M+ 
Sbjct: 66  DKPLFAARVDELLDFFGDA--PLIAHNAAFDFGFVNAELERIGRPPLDMARMCCTVQMAR 123

Query: 495 VLDSGRSSHDIASIAQKW 512
            L  G   H + ++  ++
Sbjct: 124 KLHPGA-KHSLDALCTRY 140


>gi|66823681|ref|XP_645195.1| hypothetical protein DDB_G0272112 [Dictyostelium discoideum AX4]
 gi|166204139|sp|P54697|MYOJ_DICDI RecName: Full=Myosin-J heavy chain; AltName: Full=Myosin-5b
 gi|60473262|gb|EAL71208.1| hypothetical protein DDB_G0272112 [Dictyostelium discoideum AX4]
          Length = 2245

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 83/226 (36%), Gaps = 27/226 (11%)

Query: 599  SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK-TTAQDL 657
            S E SK L  L +    L      +S  KQL D +F   K  +  K +  + K  + +  
Sbjct: 1690 STEQSKQLNQLIQENQQLKSVTNEIS--KQLDDAVFENQKINNTIKEQEIKSKRMSVELQ 1747

Query: 658  EQINCGDNPIIKNILE-WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716
            + I+ G    I+ +     QL + + +  D L   I +  +   T   L       + S 
Sbjct: 1748 QHIDEGKQQEIQQLQSTIAQLKQQQQSETDRLEKEIQQMKRERETQMKL-------VEST 1800

Query: 717  EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776
            + N   +  + +L +             +   DY + E   LA +A    L     +   
Sbjct: 1801 KLNYHMLEDRMELYR-----------NVMEIIDYKETEWEKLARLAGCKELDTKLLSDFL 1849

Query: 777  I-----HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817
            +     H  + ++++   I+   P  R  +K I + II  I  F +
Sbjct: 1850 LSCKLEHTSLGSQMWFHQIDYWCPYERDSSKGIFYGIIRSIVDFTI 1895


>gi|198423155|ref|XP_002121987.1| PREDICTED: similar to Excision repair cross-complementing rodent
           repair deficiency, complementation group 5 [Ciona
           intestinalis]
          Length = 948

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 64/201 (31%), Gaps = 30/201 (14%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   + FGIP +     EA+   A            +  I+ D D+          Y  
Sbjct: 627 CQELLRLFGIPFVLSPQ-EAEAQCAFLDM----NDLTMGTITEDSDVWLFGGKNV--YKD 679

Query: 158 VKEEKIDIE-----HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY- 211
           + + K D        +  + G+     + +   +G   D   G+ G+G   A  +++E+ 
Sbjct: 680 MFDRKRDPTCYSLLDIQAELGLLRSHFINIALCSG--SDYTEGLEGVGPVRALEIMKEFP 737

Query: 212 -GNLENIL--------INASRIKQKKRRENILE-----YAETARLSRKLVMLRTDVPITI 257
              +E+++         +A ++K       I              S+ +V       +  
Sbjct: 738 GEGMESLVKFKQWWDDAHA-QVKPPTSEAKIKTELRRLNVPQNFPSKLVVEAYLKPRVNE 796

Query: 258 PLEHLILEDCNGPRLISFLKA 278
             +  +    +   +  +L  
Sbjct: 797 SKDKFVWGMPDLSGIRDYLTE 817


>gi|58582365|ref|YP_201381.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426959|gb|AAW75996.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 416

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 69/188 (36%), Gaps = 13/188 (6%)

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454
           +TD + A  ++P  I + T   ++ T +    +   + +   ++    + L   + + LK
Sbjct: 64  LTDRLQA--ARPARIGLDTEFIRERTYWPQLAL---VQMAIGEEILLIDPLIPGMNAALK 118

Query: 455 KFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           ++      +K+ H+   D +      G+  R   D  + +       +        QK +
Sbjct: 119 EWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAA-----ALAGVGGGMGYQKLV 173

Query: 514 SYTRKEILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYER 571
                 +L   +  S  + +       E+A ++   +  +   L  +L    +L  + E 
Sbjct: 174 QEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWLAED 233

Query: 572 LDKPMIDV 579
            ++ +  V
Sbjct: 234 AERLLATV 241


>gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR]
 gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens
           JR]
          Length = 994

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 53/137 (38%), Gaps = 12/137 (8%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFI---DLSVHT---- 435
           +      +  I T  ++   S+ I + A+   + +   +F+          L +      
Sbjct: 1   MSKNTFVAVDIETTGLNPADSEIIEVAAVRFAEGRVLETFQSLVKPEKKIPLKIQQLTGI 60

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRG-FEDIMLMS 493
           ++          E+   L +F  +   + IGHNI +D   L  Y  + +R  + D + ++
Sbjct: 61  NESMVADAPACAEVTGMLAEFVHD--SIIIGHNIGFDLNFLQHYHPVFIRARYYDTLPLA 118

Query: 494 YVLDSGRSSHDIASIAQ 510
            ++      + +A++ +
Sbjct: 119 RLVWPKAHGYRLANLVE 135


>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
 gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
          Length = 1449

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 46/141 (32%), Gaps = 16/141 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQ-- 437
           +K++      F I T  +++  ++ I I    +      D   ++      +  H ++  
Sbjct: 415 KKIDDEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEIT 474

Query: 438 ----DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FE 487
               +         +++     F  +   + + HN  +D   + R       I  +    
Sbjct: 475 SITNEQVANEPKIDKVIGKFVDFVGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQCSVI 532

Query: 488 DIMLMSYVLDSGRSSHDIASI 508
           D + M+  L      + +  +
Sbjct: 533 DTLQMARDLFPDLKKYGLGDL 553


>gi|51596384|ref|YP_070575.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953]
 gi|149365996|ref|ZP_01888031.1| ribonuclease D [Yersinia pestis CA88-4125]
 gi|153949850|ref|YP_001400986.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758]
 gi|162421744|ref|YP_001606825.1| ribonuclease D [Yersinia pestis Angola]
 gi|165928352|ref|ZP_02224184.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938856|ref|ZP_02227410.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009317|ref|ZP_02230215.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166210648|ref|ZP_02236683.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401505|ref|ZP_02307002.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420357|ref|ZP_02312110.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424411|ref|ZP_02316164.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|170024358|ref|YP_001720863.1| ribonuclease D [Yersinia pseudotuberculosis YPIII]
 gi|218929182|ref|YP_002347057.1| ribonuclease D [Yersinia pestis CO92]
 gi|229894791|ref|ZP_04509971.1| ribonuclease D [Yersinia pestis Pestoides A]
 gi|229898140|ref|ZP_04513289.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902002|ref|ZP_04517123.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|270490819|ref|ZP_06207893.1| ribonuclease D [Yersinia pestis KIM D27]
 gi|294503859|ref|YP_003567921.1| ribonuclease D [Yersinia pestis Z176003]
 gi|51589666|emb|CAH21296.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953]
 gi|115347793|emb|CAL20710.1| ribonuclease D [Yersinia pestis CO92]
 gi|149292409|gb|EDM42483.1| ribonuclease D [Yersinia pestis CA88-4125]
 gi|152961345|gb|ABS48806.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758]
 gi|162354559|gb|ABX88507.1| ribonuclease D [Yersinia pestis Angola]
 gi|165913219|gb|EDR31842.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919635|gb|EDR36968.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991872|gb|EDR44173.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207828|gb|EDR52308.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962052|gb|EDR58073.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049201|gb|EDR60609.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056293|gb|EDR66062.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169750892|gb|ACA68410.1| ribonuclease D [Yersinia pseudotuberculosis YPIII]
 gi|229680898|gb|EEO76993.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|229688856|gb|EEO80923.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195]
 gi|229702264|gb|EEO90283.1| ribonuclease D [Yersinia pestis Pestoides A]
 gi|262362022|gb|ACY58743.1| ribonuclease D [Yersinia pestis D106004]
 gi|262365841|gb|ACY62398.1| ribonuclease D [Yersinia pestis D182038]
 gi|270339323|gb|EFA50100.1| ribonuclease D [Yersinia pestis KIM D27]
 gi|294354318|gb|ADE64659.1| ribonuclease D [Yersinia pestis Z176003]
 gi|320015246|gb|ADV98817.1| ribonuclease D [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 373

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 66/229 (28%), Gaps = 35/229 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +QQ  ++  T    +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITTNNALQQVCEQARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         +   ++ + +K  H    D  V    +      
Sbjct: 62  EWQP----------------------FRALLQDLNVVKYLHAGSEDLEVFLNAFDQMPTP 99

Query: 486 FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SGRS S   A +  ++      E+ KS   +  I +    +  ++A  
Sbjct: 100 MIDTQVLA--AFSGRSLSCGFAMLVAEFEGV---ELDKSESRTDWIARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +   +L L   L              R+D    + +         +D +
Sbjct: 155 DVFYLLPLAAKLVEATEAAG------RMDAAKDECLLLCRRRSETLDPE 197


>gi|328877038|gb|EGG25401.1| 5'3'-exonuclease N- and I-domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 994

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 92/249 (36%), Gaps = 52/249 (20%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
           N    VDG  ++++A Y+         G+P      +C  L  ++++ +   I     ++
Sbjct: 24  NKRVAVDGYCWLHKAVYSCSQEL--CQGIPTTRYLQYCLNLISMMKSHK--VIP---VIV 76

Query: 65  FDYP-----AVTF--RNEIYPDYKA---------NRPKIPEMLLPQLP--------LVRL 100
           FD         T   R      YK          NR +  +     +         L++ 
Sbjct: 77  FDGGPLPNKRGTEDDRRSKRQQYKEKANAYLLEGNRAEANKCFQKAVDVTTLMAFNLIKE 136

Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160
             +  GI  +    +EAD   A   Y+A        I++ D DL+   +PT       + 
Sbjct: 137 -LRRLGIEYVVAP-YEAD---AQLAYLAVTNQVDA-ILTEDSDLIAYGTPTVLFKMNKEG 190

Query: 161 --EKIDIEHV---------IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
             E+I  E++            + +   + +C+ A      D +P + G+G KT+  L +
Sbjct: 191 YCEEIKSENICSCKSNGLDFGNFNLTMLRQMCILA----GCDYLPSLHGMGIKTSYKLFK 246

Query: 210 EYGNLENIL 218
           EY  +E I 
Sbjct: 247 EYKEIEKIF 255


>gi|229897495|ref|ZP_04512651.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229693832|gb|EEO83881.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 308

 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 69/242 (28%), Gaps = 35/242 (14%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413
           +    +    +  +Y  I     +QQ  ++  T    +          ++ +   I +  
Sbjct: 2   KDNGYNDQENDVLNYQLITTNNALQQVCEQARTHAHIALDTEFVRTRTYYPQLGLIQLYD 61

Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473
            +Q         T +                         +   ++ + +K  H    D 
Sbjct: 62  GEQLSLIDPLPITEWQP----------------------FRALLQDLNVVKYLHAGSEDL 99

Query: 474 LVLHR-YGISMRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPID 531
            V    +        D  +++    SGRS S   A +  ++      E+ KS   +  I 
Sbjct: 100 EVFLNAFDQMPTPMIDTQVLA--AFSGRSLSCGFAMLVAEFEGV---ELDKSESRTDWIA 154

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591
           +    +  ++A  +   +L L   L              R+D    + +         +D
Sbjct: 155 RPLSEKQCDYAAADVFYLLPLAAKLVEATEAAG------RMDAAKDECLLLCRRRSETLD 208

Query: 592 QD 593
            +
Sbjct: 209 PE 210


>gi|320093825|ref|ZP_08025670.1| ribonuclease D [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979258|gb|EFW10756.1| ribonuclease D [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 412

 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 5/134 (3%)

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFED 488
               V   ++  G   +    L  L    +      + H+   D   L   G+      D
Sbjct: 66  DPYLVQIRREDVGSFLIDSHALPDLSPLNDGVGSTWLLHDCSQDLPNLRAVGLRCPELFD 125

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + + ++  G     +AS+A+  L      ++K  +++    +        +A  +  +
Sbjct: 126 TEIAARLV--GMRRFGLASVAESVLGLA---LVKDHQAADWSVRPLPKDWLRYAALDVEL 180

Query: 549 ILQLWLLLRPKLIV 562
           + +L   L  +L  
Sbjct: 181 LTELHRRLSTRLHD 194


>gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 205

 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 16/150 (10%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID----LSVHTSQDS 439
           +E        + T  ++   S+ I IA +   + +  + K  T+       +  H ++ +
Sbjct: 6   IEEATFTVVDLETTGLNPKTSEIIEIA-AIKVEGNVITEKFHTLVKPSIGFIPEHITKLT 64

Query: 440 TGKNTLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVLHRYGISMRG------FEDI 489
              N L  +   I      F E  ++ + I HN K+D   L+     + G          
Sbjct: 65  GITNPLVIDKPKIEQVFPHFLEFTKNSIIIAHNAKFDISFLNEASFQLTGKLIQNPVICT 124

Query: 490 MLMSYVLDSGRSSHDIASIAQKW-LSYTRK 518
           ++++  L     S  + ++A  + + Y RK
Sbjct: 125 LVLANRLFPDLKSKSLTNLAYHFNIPYHRK 154


>gi|14591211|ref|NP_143287.1| flap endonuclease-1 [Pyrococcus horikoshii OT3]
 gi|28380013|sp|O50123|FEN_PYRHO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|3257838|dbj|BAA30521.1| 343aa long hypothetical 5' nuclease [Pyrococcus horikoshii OT3]
          Length = 343

 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 78/249 (31%), Gaps = 68/249 (27%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +D  +    A Y      R+ DG P         + ++G F   +  +    +       
Sbjct: 26  IDALN----AIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAY---- 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKI----PEMLLPQL-------------------PL 97
              +FD     F+ +     +  R +      E L                         
Sbjct: 78  ---VFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEMLIED 134

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   Q  GIP I+       +  A   Y+A K    V    S D D +   +P      
Sbjct: 135 AKKLLQLMGIPIIQAP----SEGEAQAAYMASK--GDVYASASQDYDSLLFGAPRLIRNL 188

Query: 157 TVKEEKIDI---------------EHVIKKWGIPPEKMVCLQALTGDSIDNIPG-IPGIG 200
           T+  ++                  + V+K+  I  EK++ L  L G   D  PG + GIG
Sbjct: 189 TITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVG--TDYNPGGVKGIG 246

Query: 201 YKTAALLLQ 209
            K A  +++
Sbjct: 247 PKKALEIVR 255


>gi|170041336|ref|XP_001848422.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167864931|gb|EDS28314.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 982

 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVL---DSGRSSHDIASI 508
           +K+  E E  +K+ H+ + D + L+  + I +R   D      VL   D G+  + + ++
Sbjct: 550 IKQVLEAEKVIKVIHDCRNDSVNLYNQFQIMLRNVFDTQSAHAVLQFQDQGKQVYKVKNV 609

Query: 509 AQKWLSYTRKEILKSRKSSI 528
           +   L       +   K  +
Sbjct: 610 SLNTLCEMYNATVNPMKDQL 629


>gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI]
 gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 937

 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 12/129 (9%)

Query: 393 KIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-- 448
            + T  +D    + I I +  L      D    +      L +     +   ++      
Sbjct: 9   DLETTGLDPLSDRIIEIGLVRLKDLKIVDIYHTMVNPGRPLPLKIKNLTGLDDSDLASAP 68

Query: 449 ----ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFE-DIMLMSYVLDSGRSS 502
               +   +  F  +      GHNI++D   L    GIS +    D + ++ +   G  +
Sbjct: 69  AFSGVREKVLGFIGDA--PIAGHNIRFDMGFLAAAGGISFKNPAYDTVELARLAVPGLPT 126

Query: 503 HDIASIAQK 511
           + + S+ ++
Sbjct: 127 YRLESLCER 135


>gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 32/162 (19%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---------------ISTLDQKDDTSF 422
             ++Q  +      F   T  +D F    I IA               +     K     
Sbjct: 503 AAFLQTYDEEEIIVFDTETTGLDVFTDDIIEIAAMRIRGGEIVGEPLDLYIETGKPILPK 562

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
             +      +++  + + G+     E L     +     +  +GHN  YD  +L      
Sbjct: 563 LGDKENPMYAIYHEKMAAGELLAPAEALCRFLAYI--GTYPILGHNASYDYNILDNC--- 617

Query: 483 MRGFE-DIMLMS-----------YVLDSGRSSHDIASIAQKW 512
           +R +  D M               +L     S+ + S+ + +
Sbjct: 618 LRRYCNDTMQAHGNRCFDSLKLIRLLAPSLHSYKLESLLETF 659


>gi|311244960|ref|XP_003121634.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Sus
           scrofa]
          Length = 566

 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 201 LQMVLEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 241


>gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5]
 gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
 gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5]
 gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
          Length = 229

 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 19/139 (13%)

Query: 392 FKIITDTMDAFHS-KPIAIAIS-----TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
               T  +D     + + I         L  ++   +      +    +     +G+   
Sbjct: 9   LDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISGEFLK 68

Query: 446 TKEILSYLK-KFFE-NEHFLKIGHNIKYDKL-------VLHRYGI---SMRGFEDIMLMS 493
            K +   +   F E       I HN  +D         +L R  I    +    D ++M+
Sbjct: 69  DKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMA 128

Query: 494 YVLDSGRSSHDIASIAQKW 512
             +  G S +++ ++ +++
Sbjct: 129 RSIFPG-SKYNLDALCKRF 146


>gi|212715679|ref|ZP_03323807.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661046|gb|EEB21621.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
           16992]
          Length = 431

 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 73/196 (37%), Gaps = 12/196 (6%)

Query: 383 KLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           +L+         + DT+ AF  +   +A +  +L    + +        D  V   +D  
Sbjct: 6   RLQAEPREGVPDVIDTLPAFREYCSALASSHGSLAADAERASGFRYGHDDWLVQFKRDGA 65

Query: 441 GKNTLTKEILSYLKKFFEN-----EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L  + L+     + +        + I H+   D    +  G+  +   D  + + +
Sbjct: 66  GIGLLDPQALTAEGVDWNDFNAAVGDAVWILHDSLQDLPGFNDLGLKPQRLFDTEIAARL 125

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  ++++L  +
Sbjct: 126 L--GMKRFGLAAVTEHYLGLT---LAKEHSAADWSYRPLPRDWRNYAALDVELLIELETI 180

Query: 556 LRPKLIVEKLLHVYER 571
           +R +L  +  +   E 
Sbjct: 181 MRAELRRQGKIEWAEE 196


>gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 241

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
               T  +D      I             +      + +      +++T  + LT   L+
Sbjct: 6   LDTETTGLDPKSGHRIIELACVELHNYIPTGVFWHWYFNPERSVPREATAIHGLTDGFLA 65

Query: 452 YLKKFFE--NEHFLKIG-------HNIKYDKLVL----HRYG----ISMRGFEDIMLMSY 494
             K  F       +K+        HN  +D   L     + G    ISM    D + ++ 
Sbjct: 66  D-KPLFGAIAPDIVKVLEGARLIIHNASFDVGFLNFEFQKLGYQQPISMERVTDTLALAR 124

Query: 495 VLDSGRSSHDIASIAQKW 512
               G S +++ ++ +++
Sbjct: 125 RKHPG-SPNNLDALCRRY 141


>gi|270012558|gb|EFA09006.1| hypothetical protein TcasGA2_TC006714 [Tribolium castaneum]
          Length = 1185

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 19/118 (16%)

Query: 455  KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
            +F  +   + +GH +K D  V+    +      D + + ++         +  +A  +L 
Sbjct: 1075 RFLLDSGVIFVGHGLKNDFRVI-NLVVPPEQVADTVHLFHL--PHHRMVSLRFLAWHFLG 1131

Query: 515  YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYER 571
                        S   D + D++   H       + + +  L  +  V E L  +YER
Sbjct: 1132 VKI--------QSETHDSVEDARAALH-------LYKKYKQLDAQSKVGEALAELYER 1174


>gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium
           sticklandii DSM 519]
 gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium
           sticklandii]
          Length = 828

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 34/244 (13%)

Query: 354 RLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           + Q+ +   I      K+  TKD   + ++  E+     F + T  +D    K I IA +
Sbjct: 432 KEQEKAYLEIGQFLNEKVYKTKDPYLELLEAFESNEVVVFDVETTGLDIKKDKIIQIA-A 490

Query: 413 TLDQKDDTSFKV-------ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
               K+    K         ++     +H   D            +       ++  + +
Sbjct: 491 LKGGKNGVLQKFERFIKIDYSVGDSFKIHNISDEFLFQNGVDAKSAIDDFLLFSQDSVIV 550

Query: 466 GHNIKYDKLVLHRYG--ISMR------GFEDIMLMSYVLDSGRSSHDIASIAQKW-LSYT 516
           GHN+ YD  +L      I +          D ++++     G  S+ + ++ +++ L++T
Sbjct: 551 GHNVSYDINILKENMKAIDLNIDKLSSKIFDTLILTRKTYPGFFSYKLGNLFKEFSLNHT 610

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576
                         + + D       +E          LL  +   + +   Y+    P+
Sbjct: 611 P-----------THNAMDDVICTLEVLEKVVA-----KLLEKQAKRQAVFTKYQDYFYPI 654

Query: 577 IDVV 580
              +
Sbjct: 655 ARNL 658


>gi|150399374|ref|YP_001323141.1| flap endonuclease-1 [Methanococcus vannielii SB]
 gi|150012077|gb|ABR54529.1| XPG I [Methanococcus vannielii SB]
          Length = 324

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   +  G+P I     E +   A              ++S D D +   + +     T 
Sbjct: 136 KRLLELMGVPYINAPS-EGEAQCAELVKSKNAS----FVVSQDYDSILYGAESVVKNITS 190

Query: 159 KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG-IPGIGYKTAALLLQE 210
                E I++  V+ +  +   +++ +  L G   D  PG I GIG K A  ++++
Sbjct: 191 SNKSLELIELSKVLTELNVNLLELIDVAILIG--TDYNPGGIKGIGPKKAFEVVKK 244


>gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
 gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
          Length = 1437

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
           T   + +  P+     +   +        +Y +      I    + L+      F I T 
Sbjct: 359 TDNADVQAFPEASASAKKTGVKAIYGLEANYVEDGEAIAINTNREILKDCQYTIFDIETT 418

Query: 398 TMDAFHSKPI---------AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
            + A + K I          + + T DQ  +  F +    I+L+   + D    +    E
Sbjct: 419 GLSAVNDKIIQLSAVKMKNGVVLDTFDQFINPGFPLSEQTINLTG-ITDDLVKNSKPEAE 477

Query: 449 ILSYLKKFFENEHFLKIGHN-IKYDK----LVLHRYGISMRG--FEDIMLMSYVLDSGRS 501
           +L   ++F+     +  GHN IK+D       L  + +        D + ++  L     
Sbjct: 478 VLKMFQQFYA--GTILAGHNVIKFDYGFVNHALAVHKLPKINTLVIDTLNLARWLYPNFG 535

Query: 502 SHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
            + +  +++K+   L +  + I  S  + + +        + + +
Sbjct: 536 RYTLDFLSKKFSVNLEHHHRAIDDSTATGMLLHIFLKEAEENYGV 580


>gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941]
 gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 560

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 42/145 (28%), Gaps = 23/145 (15%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA------------ISTLDQKDDTSFKVETIFIDL 431
           L       F + T    A       +              STL                +
Sbjct: 28  LREAPYVVFDLETTGSSAREGGITELGALKLVRGRVVDRFSTLVNPGRPIEPFVARLTGI 87

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISMRGFE 487
           +      +       +E++   ++F E    + + HN  +D   L       G+      
Sbjct: 88  TDEMVSGAP----PAREVIPRFEEFAE--GSVLVAHNAGFDCSFLAAARGGRGL-PNPVL 140

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + ++ +L  G   + ++++   +
Sbjct: 141 DTLRLARLLVPGLRRYRLSALVSHF 165


>gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289]
 gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289]
          Length = 896

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 32/162 (19%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---------------ISTLDQKDDTSF 422
             ++Q  +      F   T  +D F    I IA               +     K     
Sbjct: 503 AAFLQAYDEEEIIVFDTETTGLDVFTDDIIEIAAMRIRGGEIVGEPLDLYIETGKPILPK 562

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482
             +      +++  + + G+     E L     +        +GHN  YD  +L+     
Sbjct: 563 LGDKENPMYAIYHEKMAAGELLAPAEGLCRFLTYI--GTRPILGHNASYDYNILNNC--- 617

Query: 483 MRGFE-DIMLMS-----------YVLDSGRSSHDIASIAQKW 512
           +R +  D M               +L     S+ + S+ + +
Sbjct: 618 LRRYCNDTMQAHGNRCFDSLKLIRLLAPSLHSYKLESLLETF 659


>gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 205

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 18/151 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAI-----STLDQKDDTSFKVETIFIDLSVHTSQD 438
           +E        + T  ++   S+ I IA      S + +K  T  K    FI    H ++ 
Sbjct: 6   IEEATFTVVDLETTGLNPKTSEIIEIAAIKVEGSVITEKFHTLVKPSIGFIP--EHITKL 63

Query: 439 STGKNTLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVLHRYGISMRG------FED 488
           +   N L  +   I      F E  ++ + I HN K+D   L+   + + G         
Sbjct: 64  TGITNPLVIDKPKIEQVFPHFLEFTKNSIIIAHNAKFDISFLNEASLQLTGKLIQNPVIC 123

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW-LSYTRK 518
            ++++  L     S  + ++A  + + Y RK
Sbjct: 124 TLVLANRLFPDLKSKSLTNLAYHFNIPYHRK 154


>gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish
           7]
 gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon
 gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7]
          Length = 230

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 19/139 (13%)

Query: 392 FKIITDTMDAFHS-KPIAIAIS-----TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
               T  +D     + + I         L  ++   +      +    +     +G+   
Sbjct: 9   LDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISGEFLK 68

Query: 446 TKEILSYLK-KFFE-NEHFLKIGHNIKYDKL-------VLHRYGI---SMRGFEDIMLMS 493
            K +   +   F E       I HN  +D         +L R  I    +    D ++M+
Sbjct: 69  DKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMA 128

Query: 494 YVLDSGRSSHDIASIAQKW 512
             +  G S +++ ++ +++
Sbjct: 129 RSIFPG-SKYNLDALCKRF 146


>gi|308071868|emb|CBW54789.1| putative DNA exonuclease [Pantoea phage LIMElight]
          Length = 314

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 88/268 (32%), Gaps = 43/268 (16%)

Query: 2   QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLL-----QNSRKES 56
           +  + + L+D    IY+A       +     LP  AI  F  ++ + +     +  R   
Sbjct: 19  KNGDKILLLDADFLIYQA-------AATVKTLPT-AIRRFYKLVLEYMFLTGTKKCRLFI 70

Query: 57  IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT------QAFGIPAI 110
             ++ A    Y   T        Y+  R    + L  + PL              GI   
Sbjct: 71  TPTNCAKCNRYFYPTV-----KVYQDQRKAR-QELPLKGPLKGHLLNNPDEYAEHGITVA 124

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--------CLYDTVKEEK 162
               FEADD++  + +    +G    + S DKDL     P           + D      
Sbjct: 125 ASDWFEADDLMIIHAHELGPDG---IVCSGDKDLRLTPGPWWDNEIGRVNVIPDRFGHLY 181

Query: 163 IDIEH-VIKKWGIPPEKMVCLQALTGDSIDNIPGI-----PGIGYKTAALLLQEYGNLEN 216
            D +     +      K    Q L GDS DN+ GI        G   A  +L E  N E+
Sbjct: 182 WDEDAPSNARCKGRGTKFFWAQMLMGDSADNVKGILTYNGRLCGAAAAFQILHEIEN-ES 240

Query: 217 ILINASRIKQKKRRENILEYAETARLSR 244
              N          +++L  AE   L R
Sbjct: 241 EAANLVCRAYAAIGQDVLAEAEMVWLRR 268


>gi|195489284|ref|XP_002092670.1| GE11539 [Drosophila yakuba]
 gi|194178771|gb|EDW92382.1| GE11539 [Drosophila yakuba]
          Length = 1009

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 94/234 (40%), Gaps = 36/234 (15%)

Query: 453 LKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVL---DSGRSSH----- 503
           LK   E++  +K+ H+ + D   +  ++GI +R   D      +L   +SG+  +     
Sbjct: 607 LKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQSAHAILQYQESGKQVYKAKYI 666

Query: 504 DIASIAQKW------LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL-- 555
            + S+ +++      +    K+I +  +       ++   +  +A  +  V++   L   
Sbjct: 667 SLNSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMML-YAAGDVLVLIHDQLFGN 725

Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE---ISKNLLSLEEN 612
           L  ++  E    ++   +     ++ Q++   ++I +   ++VS E   + + L    ++
Sbjct: 726 LARQIKPEN-RALFS--ELCTEQILMQIKPNEVKIRKKQ-RKVSTEVSDLKQKLAQTSKS 781

Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666
           I         + S +++   L   +      K +   +   A+ LE++    NP
Sbjct: 782 I---------VLSNREI--RLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNP 824


>gi|262199242|ref|YP_003270451.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
 gi|262082589|gb|ACY18558.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
           DSM 14365]
          Length = 308

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS--------VHT 435
           + T     F + T   D    + I + +      DD   +V  I  D++           
Sbjct: 1   MSTGELLVFDVETTGTDRRRDQIIELCVQFGLG-DDAPNRVWRIRPDVAIEPAAQEVHGI 59

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
           S D   +     E+   L++ F +   L +G+N+ +D  +L 
Sbjct: 60  SMDDLAECPRFPEVADELRELFASATVL-VGYNVSFDIGMLQ 100


>gi|269955496|ref|YP_003325285.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304177|gb|ACZ29727.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 247

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 18/126 (14%)

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI-------------STLDQKDD 419
           + +    +           F   T  +D  + + +  A+               +D   +
Sbjct: 2   SEQQYDAFTAGWARGPLVGFDTETTGVDVANDRIVTAAVVLRIPGVSTDVRTWLVDPGVE 61

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV---- 475
              +   I    + H            +EI + L      E    + +N  +D  +    
Sbjct: 62  IPAEAAAIHGVTTEHARAHGVAPAVALEEIAAELAAHL-REGVPVVAYNAAFDLSLLDAE 120

Query: 476 LHRYGI 481
           L R+G+
Sbjct: 121 LARHGL 126


>gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
          Length = 1442

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 15/154 (9%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV-------- 433
           Q L+      F I T  +     + I      +        K++     +          
Sbjct: 402 QNLDDATYVIFDIETTGLFPNFDEIIEFGAIIMQNNKQIGDKIQFFVKPIQEINENITNL 461

Query: 434 -HTSQDSTGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLHRYGIS-MRGFE- 487
            + SQ+        K  L  +K+ F N        I  +I +    L ++G+  ++    
Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFANHILVAHNGISFDINFINQRLLKWGLEPLKNPSI 521

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521
           D +++   ++  +S H + +I +K+      E+ 
Sbjct: 522 DTLMILRAINPFKS-HRLGAICKKYEVDYNDEVA 554


>gi|194206775|ref|XP_001503529.2| PREDICTED: similar to exonuclease 3-5 domain-like 1 [Equus
           caballus]
          Length = 562

 Score = 40.0 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
           L+   E++  LK+ H+ ++    L H+YGI +    D  + 
Sbjct: 194 LQMVLEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA 234


>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1407

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 89/228 (39%), Gaps = 30/228 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFI-DLSVHTSQDSTGKN 443
                 F I T  +   + + I I A+   + K   +F+        +S   ++ +    
Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDE 450

Query: 444 TLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMRG-FEDIMLMSY 494
           ++ K+   I   L KF E   + + + HN  +D   +     ++ +++     D + +S 
Sbjct: 451 SMVKDAPSIEEILPKFLEFASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSR 510

Query: 495 VLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSS----IPIDKISDSQVQEHAIENSN 547
            L     ++ + ++A      L +  + +  +  ++      ID++ +  V++  +++ N
Sbjct: 511 HLYKDLKNYKLDTLADHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEK--VKDIN 568

Query: 548 VILQLWLLLRPKL----------IVEKLLHVYERLDKPMIDVVSQMEI 585
            IL+   +   KL            + L ++YE + K  ++   +   
Sbjct: 569 AILKESEVDIRKLPVYHVTILVKDQKGLRNLYEIISKSNLEYFHRTPR 616


>gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
 gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
          Length = 188

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 16/140 (11%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQ----KDDTSFKVETIFIDLSV----HTSQDST 440
             +F + T  +   + K I +     +     K  +      + I  S     H + +  
Sbjct: 28  YIAFDVETTGLSPINDKIIEVGAVLFENGEIIKKYSYLVNLEVVIPASATAVNHITNEMI 87

Query: 441 GKNTLTKEILSYLKKFFEN---EHFLKIGHNIKYDKLV----LHRYGISMR-GFEDIMLM 492
              T    + + L KF ++   E  +   HN  +D       L R G   +  + D + +
Sbjct: 88  QDATKEDTVYAELVKFLDDALKEQTVICAHNATFDMKFISETLMRLGYDGKIHYVDTLSL 147

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           S  L  G  ++   ++A  +
Sbjct: 148 SRNLFKGLHNYKQDTVATHF 167


>gi|254392979|ref|ZP_05008143.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|197706630|gb|EDY52442.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 240

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 62/231 (26%), Gaps = 25/231 (10%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAI-------------STLDQKDDTSFKVETIFIDL 431
                  F + T   D   ++ +  A+                D       +   I    
Sbjct: 4   HGEPLVGFDLETTGTDPREARIVTAAVVEARAGEPVRRRTWLADPGVRIPAQASAIHGIT 63

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRGFE 487
           S   + +      +  E+ + L  ++       + +N  +D  +L     RYG  +    
Sbjct: 64  SERAAAEGRPAREVADEVAAELCGYWAR-GVPVVAYNAAFDLSLLAAEIRRYG--LPSLS 120

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  L           + I     ++    R     S +  +P++   D+     A     
Sbjct: 121 D-RLGGRPTGPVIDPYTIDRAVDRYRKGKRTLEAVSAEYGVPLEDAHDATADALAAVRVA 179

Query: 548 VILQLWL----LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594
             L L       L P  + E+ +  Y          + +       +D   
Sbjct: 180 GALALRHPSVAALDPARLHERQIVWYAEWAADFQAFLRRKGEADAVVDPHW 230


>gi|193213289|ref|YP_001999242.1| excinuclease ABC subunit C [Chlorobaculum parvum NCIB 8327]
 gi|193086766|gb|ACF12042.1| excinuclease ABC, C subunit [Chlorobaculum parvum NCIB 8327]
          Length = 629

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI----LINASRIKQKKRRENILEY 236
            + GI G+G K+A  LL  +G++E +    +   S +  +K  E+I  Y
Sbjct: 572 ELTGIKGVGEKSAEKLLSRFGSVETVAKASIEELSEVTGRKTAESIYRY 620


>gi|269218897|ref|ZP_06162751.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269212008|gb|EEZ78348.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 240

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 49/162 (30%), Gaps = 33/162 (20%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAI-STLDQKDDTSFKVETIFIDLSVHTS-------QDS 439
               F   T  +D    + +  ++ +  ++     + +    +++            + +
Sbjct: 12  PVIGFDTETTGIDPKRDRLVTCSLVAVTEEGVSKRYWLADPGVEIPERAGAVHGITTERA 71

Query: 440 TGKNTLTKEILSYLKKFFENE---HFLKIGHNIKYDKLVLH----RYGI---------SM 483
             +   +KE+L  +              +  N  YD  +L     R+G+          +
Sbjct: 72  RAEGRPSKEVLEEVAALLAEHMGRGHPAVAFNATYDFTLLESELDRHGLPTLAERLGGEV 131

Query: 484 RGFEDIMLMSYVLD--SGRSSHD---IASIAQKWLSYTRKEI 520
               D     Y+LD  + R       +  + + +  +   + 
Sbjct: 132 FPVVDP----YLLDRSADRYRKGKRRLEDLCRHYGVHAEDDF 169


>gi|120597845|ref|YP_962419.1| 3'-5' exonuclease [Shewanella sp. W3-18-1]
 gi|120557938|gb|ABM23865.1| 3'-5' exonuclease [Shewanella sp. W3-18-1]
          Length = 301

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 11/128 (8%)

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLD 497
              ++ L  E L  LK   E+E+ LK+G  ++ D   L R  GI++    D   +++VL 
Sbjct: 146 YLFQHALLAEQLGLLKPVLEDENILKVGVGLRSDGQALTREWGINVTPRLD---LNWVLA 202

Query: 498 SGRSSHDIAS--IAQKWLSYTRKEILKSRKSSIP-IDKISDSQVQ-EHAIENSNVILQLW 553
              +  ++ +  +    L    K I K +K ++    ++  +  Q  +A  ++      +
Sbjct: 203 QLGAGKEMGTRQLVATLLQ---KRIDKPKKVTLSNWQQVPLTSTQIVYAALDALAAQHCF 259

Query: 554 LLLRPKLI 561
             L  KL 
Sbjct: 260 SELIDKLK 267


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 106/330 (32%), Gaps = 35/330 (10%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           LE      F + T  + A +   I +A   +   +  D           LS         
Sbjct: 416 LEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-------RGFED 488
           + D         +++   +++  ++  + + HN  +D   L+     +           D
Sbjct: 476 TDDMLQDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVDKAKNPVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +   L     +H + ++ +K+   L+   + I  +  ++  + K+      E  I  
Sbjct: 534 TLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRAIYDTEATAYLLLKM-LKDAAEKGI-- 590

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EISK 604
                Q    L   +      + Y+R  +P    +  +  TG++ +   L  +S      
Sbjct: 591 -----QYHDELNENM---GQSNAYQRS-RPYHATLLAVNSTGLK-NLFKLVSLSHIHYFY 640

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  +  +  +   E   + S    G++ F  +   S  + +         +++      
Sbjct: 641 RVPRIPRSQLEKYREGLLIGSACDRGEV-FEGMMQKSPEEVEDIASFYDYLEVQPPEVYR 699

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           + +   ++   +  K        L   +NK
Sbjct: 700 HLLELELVRDEKALKEIIANITKLGEKLNK 729


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score = 40.0 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 106/330 (32%), Gaps = 35/330 (10%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           LE      F + T  + A +   I +A   +   +  D           LS         
Sbjct: 416 LEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-------RGFED 488
           + D         +++   +++  ++  + + HN  +D   L+     +           D
Sbjct: 476 TDDMLQDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVDKAKNPVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +   L     +H + ++ +K+   L+   + I  +  ++  + K+      E  I  
Sbjct: 534 TLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRAIYDTEATAYLLLKM-LKDAAEKGI-- 590

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EISK 604
                Q    L   +      + Y+R  +P    +  +  TG++ +   L  +S      
Sbjct: 591 -----QYHDELNENM---GQSNAYQRS-RPYHATLLAVNSTGLK-NLFKLVSLSHIHYFY 640

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  +  +  +   E   + S    G++ F  +   S  + +         +++      
Sbjct: 641 RVPRIPRSQLEKYREGLLIGSACDRGEV-FEGMMQKSPEEVEDIASFYDYLEVQPPEVYR 699

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           + +   ++   +  K        L   +NK
Sbjct: 700 HLLELELVRDEKALKEIIANITKLGEKLNK 729


>gi|302825647|ref|XP_002994422.1| hypothetical protein SELMODRAFT_432344 [Selaginella moellendorffii]
 gi|300137649|gb|EFJ04511.1| hypothetical protein SELMODRAFT_432344 [Selaginella moellendorffii]
          Length = 218

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 4/154 (2%)

Query: 208 LQEYGNLENIL--INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265
           ++++G+LENIL       + +   ++ + E++     + +++ LR D+ + +P+E    +
Sbjct: 1   MRKHGSLENILSAAAIRAVGKPYIQDALKEHSVLLEKNMEVLSLRRDINVELPVEWCRDK 60

Query: 266 DCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325
             +   L    K LE   L   +A      +  +  V         K   ++ E      
Sbjct: 61  SNDLAALQWLEKELEM--LHRFLAAANWSGSRLVPFVSYATEENAEKNQELDREDSGQAL 118

Query: 326 IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359
                 +  S  +S   +E   ++    R +  +
Sbjct: 119 DGRWLDTEASVGSSLAQNEALKERGLARRTRWKA 152


>gi|220924978|ref|YP_002500280.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
 gi|219949585|gb|ACL59977.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
          Length = 389

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 67/197 (34%), Gaps = 29/197 (14%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I +T  +     +  T    +          ++ K   I I+  D           + 
Sbjct: 2   KLITSTDGLAATCAQFATQPFVTVDTEFMRETTYYPKLCLIQIAAPDGS-------TALV 54

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFE 487
             L+                 L+       +E  LK+ H+ + D +++  + G+  + F 
Sbjct: 55  DPLAPAID-------------LTPFFALMGDERVLKVFHSARQDLEIIWLQGGLLPQPFF 101

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
           D  + + V       +   S++ + L     + +I KS + +    +        +A+ +
Sbjct: 102 DTQVAAMVC-----GYG-DSVSYEQLVNDVAKAKIDKSSRFTDWSRRPLSEAQLSYALSD 155

Query: 546 SNVILQLWLLLRPKLIV 562
              +++++  L  +L+ 
Sbjct: 156 VTHLIKVYEALARQLLA 172


>gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
 gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
          Length = 906

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 32/158 (20%)

Query: 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD 438
           ++VQ  E      F   T  +D FH   + I  + +  ++            LS+H   D
Sbjct: 497 KFVQSYENETITIFDTETTGLDVFHDDILQI--AAVKVRNGAVVPGSA----LSLHLESD 550

Query: 439 STGKNTLTKEI---------------LSYLKKFFENEH-FLKIGHNIKYDKLVLHR---- 478
                 L   +                  L++F +     + +GHN  YD  +L      
Sbjct: 551 REIPEMLGDIVNPIIEERRNQTLLPRREALQRFVDYARGTVLLGHNADYDIHILANNLRR 610

Query: 479 ------YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
                     +  + D + +  +L  G   + +  + +
Sbjct: 611 EMPETALPNELSDYFDSLHLIRLLRPGLRQYKLKYLLE 648


>gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG
           catalytic domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia glumae BGR1]
          Length = 381

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 37/196 (18%)

Query: 386 TIGSASF-KIITDTMDAFHSKPIAIAI--------STLDQKDDTSFKVETIFIDLSVHTS 436
             G  +F  + T    A   +   I +        ST     D    +      L+  T 
Sbjct: 15  ADGPLAFVDLETTGGSATEHRITEIGVVEVGPNGVSTWSSLIDPCQPIPAFIQQLTGITD 74

Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMRG-FEDIML 491
               G  +      +   +    E    I HN  +D+  L     R G +        + 
Sbjct: 75  AMVRGAPSFASIAAALYARL---EGRFFIAHNASFDRGFLRAEFERAGYAFNPDVLCTVR 131

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
           +S  L    S H + ++ ++              + +P         +  A+ +++++ Q
Sbjct: 132 LSRALFPRESRHGLDALIERH-------------ALVP-------NARHRALADADLVWQ 171

Query: 552 LWLLLRPKLIVEKLLH 567
            W  L   +  E+L  
Sbjct: 172 FWRRLHETIPSERLAE 187


>gi|148245861|gb|ABQ52893.1| DNA polymerase [uncultured marine microorganism]
          Length = 119

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 13/116 (11%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI       
Sbjct: 1   AKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQEHLGGNI------- 53

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  +    +IDR  T + S F+S S Q   +N  +  +K  L + Q +++  
Sbjct: 54  ------TLEFHDKIDRSETHQLSLFNSSSTQVETVNKIEEEKKESLIKPQIITEIE 103


>gi|294909525|ref|XP_002777787.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
 gi|239885749|gb|EER09582.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
          Length = 937

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 81  KANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIIST 140
           K  + +           ++L   AFGIP ++    EA+            +G    +IS 
Sbjct: 747 KLAKQQTEVDFRALKEDIQLLLTAFGIPWVDAPC-EAEAQCVALVRNGLADG----VISD 801

Query: 141 DKDLMQLVSPTTC---LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIP 197
           D D +   +        +D +  E      +  +     + MV L  L G   D  PG+ 
Sbjct: 802 DSDTLMYGAEVVLRRLYFDAMYVEMYSSSRMPDRLR-DHDAMVSLAMLLG--CDYTPGVL 858

Query: 198 GIGYKTAALLLQ 209
           GIG   A  ++Q
Sbjct: 859 GIGAVNALEIIQ 870


>gi|221638369|ref|YP_002524631.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
 gi|221159150|gb|ACM00130.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
          Length = 385

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 62/197 (31%), Gaps = 22/197 (11%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T+ +  + +  +     +          + SK   I ++   +  +         
Sbjct: 2   QTITTTEALAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPIEG 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFE 487
            D+S                 L  L   F +E  +K+ H  + D  +    G +      
Sbjct: 62  PDMS-----------------LEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V   G       ++ +K     R+++ K+ + +    +      + +AI +  
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVKK---IAREQLDKTSRFTDWSRRPLSDAQKTYAIADVT 160

Query: 548 VILQLWLLLRPKLIVEK 564
            +  ++  L  ++    
Sbjct: 161 HLRVIYEWLSAQIEKNG 177


>gi|297740589|emb|CBI30771.3| unnamed protein product [Vitis vinifera]
          Length = 547

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 56/136 (41%), Gaps = 24/136 (17%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
           +    +   +  I    +EAD   A  T++A  +     II+ D D++    P       
Sbjct: 133 LIQVLKQENVSYIVAP-YEAD---AQMTFLAVSQQVDA-IITEDSDMIPFGCPRI----I 183

Query: 158 VKEEKIDIEHVIKKW------------GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAA 205
            K +K   + V  K+            G   + ++ +  L+G   D +  +PG+G K A 
Sbjct: 184 FKMDKFG-QGVEFKYSMIQQNKELSFAGFTKQMILEMCILSG--CDYLQSLPGMGLKKAH 240

Query: 206 LLLQEYGNLENILINA 221
            L++++ + + ++ + 
Sbjct: 241 ALIKKFKSYDKVIKHL 256


>gi|156363461|ref|XP_001626062.1| predicted protein [Nematostella vectensis]
 gi|156212924|gb|EDO33962.1| predicted protein [Nematostella vectensis]
          Length = 363

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 453 LKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L     N   LK+G  I  D   +L    I   G  D  + + VL   +    +  +A+ 
Sbjct: 138 LLNVLGNIRILKVGSGISGDAVKLLRDTEILCNGRSDTQVYAKVLALNQDGTGLKKLAKT 197

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQE--HAIENSNVILQLWLLLRPKLIVEKLLH 567
            L     E+ K +  S+   ++     ++  +A  ++ V  +L++ L+ +L    L+ 
Sbjct: 198 ILGI---ELDKPKYISLSNWELFPLTYEQASYAALDAWVSFKLFVELKQRLHKSGLVR 252


>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 1407

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 89/228 (39%), Gaps = 30/228 (13%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFI-DLSVHTSQDSTGKN 443
                 F I T  +   + + I I A+   + K   +F+        +S   ++ +    
Sbjct: 391 EDEFTVFDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPISSFITKLTGIDE 450

Query: 444 TLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMRG-FEDIMLMSY 494
           ++ K+   I   L KF E   + + + HN  +D   +     ++ +++     D + +S 
Sbjct: 451 SMVKDAPSIEEILPKFLEFASNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSR 510

Query: 495 VLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSS----IPIDKISDSQVQEHAIENSN 547
            L     ++ + ++A      L +  + +  +  ++      ID++ +  V++  +++ N
Sbjct: 511 HLYKDLKNYKLDTLADHLQVKLEHHHRAVDDAMATAEIFIKTIDRLKELGVEK--VKDIN 568

Query: 548 VILQLWLLLRPKL----------IVEKLLHVYERLDKPMIDVVSQMEI 585
            IL+   +   KL            + L ++YE + K  ++   +   
Sbjct: 569 AILKESEVDIRKLPVYHVTILVKDQKGLRNLYEIISKSNLEYFHRTPR 616


>gi|307352867|ref|YP_003893918.1| DNA repair and recombination protein RadA [Methanoplanus
           petrolearius DSM 11571]
 gi|307156100|gb|ADN35480.1| DNA repair and recombination protein RadA [Methanoplanus
           petrolearius DSM 11571]
          Length = 323

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 31/134 (23%)

Query: 192 NIPGIPGIGYKTAALLL-QEYGNLENI-------LINASRIKQKKRRENILEYAETARLS 243
            I  +PG+G  TA  L    Y  +E I       L  A+ I +   ++ I E  + A + 
Sbjct: 5   EIEDLPGVGPTTADKLREAGYSTIEGIATASYADLAEAAEIGESTAKKMIREARKMADIG 64

Query: 244 ---------------RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288
                          RKL     +       + L+        +I F     F    +++
Sbjct: 65  GFRKGTDVLEERKKVRKLTTFVPE------FDALMGGGLETMSIIEFYGE--FGSGKSQI 116

Query: 289 ATTYDCDAANIEPV 302
           A     +A   E V
Sbjct: 117 AHQMAVNAQLPEDV 130


>gi|148272845|ref|YP_001222406.1| putative ribonuclease D [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830775|emb|CAN01715.1| putative ribonuclease D [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 496

 Score = 40.0 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 84/302 (27%), Gaps = 18/302 (5%)

Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA-ISTLDQKDDTSFKVETIFID 430
            +    +   +   T          + + A  +       I+   ++       +  ++ 
Sbjct: 85  TDAPAPKPLREAAATGDLTVIDTREEYLRAVEAIAAGTGPIAVDAERASGFRYSQRAYLI 144

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490
                   +   +       S L     +     + H    D   L   G+  +   D  
Sbjct: 145 QVFRRGAGTFLFDPPAVGGFSELDAVIRD--VEWVLHAASQDLACLREVGLDPQRIFDTE 202

Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE-HAIENSNVI 549
           L S +L  G     + ++ ++ L       L    S+         +    +A  +  ++
Sbjct: 203 LASRLL--GLPRVGLGTVVEELLGIH----LAKEHSAADWSTRPLPRAWLVYAALDVELL 256

Query: 550 LQLWLLLRPKLIVEKLLHVYERL-------DKPMIDVVSQMEITGIQ-IDQDLLKQVSAE 601
           + +   +  +L  +    + E+        +     V     ++G+  +       V+ E
Sbjct: 257 VDVRDEIARRLEEQGKTGIAEQEFAATIAKEAKPARVEPWRRLSGLHGVRGGRNLAVAKE 316

Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661
           + +   +    +    G      S   +  +L    +  +  +  +G+   +  D     
Sbjct: 317 LWEARDAYAREVDTSPGRLVPDGSLVAVARVLPQTKRDLAAVREFSGRASRSEIDRWWAA 376

Query: 662 CG 663
             
Sbjct: 377 VE 378


>gi|148245867|gb|ABQ52896.1| DNA polymerase [uncultured marine microorganism]
          Length = 119

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI       
Sbjct: 1   AKIVTDAPLDFEIENCELKGSNFDAVKPILENLELKKFVKEINQLQEHFGGNI------- 53

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  +    +IDR  T + S F S S Q   +N  +  +K  L + Q +++  
Sbjct: 54  ------TLEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEKKESLIKPQIITEIE 103


>gi|332557401|ref|ZP_08411723.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
 gi|332275113|gb|EGJ20428.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
          Length = 385

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 62/197 (31%), Gaps = 22/197 (11%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T+ +  + +  +     +          + SK   I ++   +  +         
Sbjct: 2   QTITTTEALAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPIEG 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFE 487
            D+S                 L  L   F +E  +K+ H  + D  +    G +      
Sbjct: 62  PDMS-----------------LEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V   G       ++ +K     R+++ K+ + +    +      + +AI +  
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVKK---IAREQLDKTSRFTDWSRRPLSDAQKTYAIADVT 160

Query: 548 VILQLWLLLRPKLIVEK 564
            +  ++  L  ++    
Sbjct: 161 HLRVIYEWLSAQIEKNG 177


>gi|71028278|ref|XP_763782.1| exonuclease I [Theileria parva strain Muguga]
 gi|68350736|gb|EAN31499.1| exonuclease I, putative [Theileria parva]
          Length = 550

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 163 IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA- 221
            D++  + K  I  +K + +  L+G   D+   I GIG K A  L+ +Y  +E +L    
Sbjct: 271 YDLDGNMLKL-IEYDKFIMICILSGTDYDDKYHIGGIGIKVACKLMLQYQTIETLLEYLV 329

Query: 222 ----SRIKQKKRRENILEYAETAR 241
                ++ +K   + +L + +   
Sbjct: 330 GNGKYKLPEKVPHQELLSHYKNIY 353


>gi|77462516|ref|YP_352020.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|126461450|ref|YP_001042564.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
 gi|77386934|gb|ABA78119.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|126103114|gb|ABN75792.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
          Length = 385

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 62/197 (31%), Gaps = 22/197 (11%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T+ +  + +  +     +          + SK   I ++   +  +         
Sbjct: 2   QTITTTEALAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPIEG 61

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFE 487
            D+S                 L  L   F +E  +K+ H  + D  +    G +      
Sbjct: 62  PDMS-----------------LEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLF 104

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V   G       ++ +K     R+++ K+ + +    +      + +AI +  
Sbjct: 105 DTQVAAMVCGFGEQV-GYETLVKK---IAREQLDKTSRFTDWSRRPLSDAQKTYAIADVT 160

Query: 548 VILQLWLLLRPKLIVEK 564
            +  ++  L  ++    
Sbjct: 161 HLRVIYEWLSAQIEKNG 177


>gi|189193621|ref|XP_001933149.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978713|gb|EDU45339.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 763

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 12/156 (7%)

Query: 382 QKLETIGSASFKIITDTMDAF-HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           ++L+T    +F +       F   K +   I    + +  S K     + L+        
Sbjct: 184 EQLQTHYCKTFDVAERVAQYFLQEKVVGFDIEWKPRGNPCSIKQNVSLVQLACENRIALF 243

Query: 441 GKNTLTKEILSYL-----KKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI----- 489
                  + +  L     K   E+ +  K+G  +K D   L +Y GI  +G  ++     
Sbjct: 244 HLALFPGKKVEKLMPPSLKAVLESPNIYKVGVAVKGDFTRLEKYLGIQPQGVFELSRLHN 303

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           ++  + +D  + S  +  +A +   + +  + K  +
Sbjct: 304 LVEWHDVDPSKISKKLVGLAAQVHQHLQLPLYKGEQ 339


>gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 324

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
                  Q +A D+    M  + K+        +++L +HDE++ E P+
Sbjct: 244 HNCENICQAAARDVLAYNMPPIEKA------GYEIVLTVHDEIISEAPD 286


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1437

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 106/330 (32%), Gaps = 35/330 (10%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           LE      F + T  + A +   I +A   +   +  D           LS         
Sbjct: 416 LEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-------RGFED 488
           + D         +++   +++  ++  + + HN  +D   L+     +           D
Sbjct: 476 TDDMLQDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVEKAKNPVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +   L     +H + ++ +K+   L+   + I  +  ++  + K+      E  I  
Sbjct: 534 TLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRAIYDTEATAYLLLKM-LKDAAEKGI-- 590

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EISK 604
                Q    L   +      + Y+R  +P    +  +  TG++ +   L  +S      
Sbjct: 591 -----QYHDELNENM---GQSNAYQRS-RPYHATLLAVNSTGLK-NLFKLVSLSHIHYFY 640

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  +  +  +   E   + S    G++ F  +   S  + +         +++      
Sbjct: 641 RVPRIPRSQLEKYREGLLIGSACDRGEV-FEGMMQKSPEEVEDIASFYDYLEVQPPEVYR 699

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           + +   ++   +  K        L   +NK
Sbjct: 700 HLLELELVRDEKALKEIIANITKLGEKLNK 729


>gi|117928598|ref|YP_873149.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117649061|gb|ABK53163.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 416

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 16/186 (8%)

Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNI 469
           ++   ++          ++   V   +   G   +     + L+   E       I H  
Sbjct: 44  VAVDAERASAYRYGHRAYL---VQLRRPGAGTFLIDPLPFANLRPVHEALSTAEWIVHAA 100

Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529
             D   L   G+      D  L + +  +G     +A++ ++ L +    + K       
Sbjct: 101 AQDLPCLAELGLRPARLFDTELAARL--AGYPRVGLAAMVEELLGFR---LNKDHARVDW 155

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDK------PMIDVVSQ 582
             +        +A  +  V+++L  +L  +L  + KL    E  +       P   V   
Sbjct: 156 SRRPLPESWLRYAALDVEVLVELREILHTELQRQGKLRWAVEEFEHVRTAPPPSSPVERW 215

Query: 583 MEITGI 588
             ++GI
Sbjct: 216 RRVSGI 221


>gi|113969320|ref|YP_733113.1| 3'-5' exonuclease [Shewanella sp. MR-4]
 gi|113884004|gb|ABI38056.1| 3'-5' exonuclease [Shewanella sp. MR-4]
          Length = 299

 Score = 40.0 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 27/269 (10%)

Query: 311 NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK 370
           NK   +  E+        +       Q     +E     L     Q   Q+     + T 
Sbjct: 11  NKLAWLRQELGEHADELIAAMDKAGSQYLAGLAESQAGDLSAADSQLKFQWFQQKIALTT 70

Query: 371 IVNTKDIQQWV-----------QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
            +   ++   V           +    +   +   +   +    S+    ++   D +  
Sbjct: 71  RLTDAELANLVPLSLVDIKGEMRDEMRVELVTPDTLATALQQLSSE----SVLGFDTETR 126

Query: 420 TSFKVETIFIDLSVHTSQDS----TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            SF+       LS+     S      +  +  E L+ LK   ENE  LK+G  ++ D   
Sbjct: 127 ASFEPGVQH-PLSLVQLATSDTCYLFQRAVLGERLAELKPLLENERILKVGIGLRGDGQA 185

Query: 476 LHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-IDKI 533
           L R + I +    D+      L +G+       +A    +   K I K +K ++    ++
Sbjct: 186 LKRDWDIQVSPRLDLNWAMAQLGAGKEMGTRQLVA----ALLHKRIDKPKKITLSNWQQV 241

Query: 534 SDSQVQ-EHAIENSNVILQLWLLLRPKLI 561
             SQ Q ++A  ++      +  L  KL 
Sbjct: 242 PLSQAQIQYAALDTLAANLCFWQLIDKLQ 270


>gi|194760687|ref|XP_001962569.1| GF15526 [Drosophila ananassae]
 gi|190616266|gb|EDV31790.1| GF15526 [Drosophila ananassae]
          Length = 1237

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%)

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT 157
            +   + FGIP I     EA+   A     A         I+ D D+      T      
Sbjct: 863 CQELLRLFGIPYIVAP-MEAEAQCAFLN--AADLTHGT--ITDDSDIWLFGGRTVYKNFF 917

Query: 158 VKEE---KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNL 214
            + +   +   E + + +     K++ L  L G   D   GI GIG  TA  +L  +   
Sbjct: 918 AQNKHVLEFRSEQIEQTFNCNRGKLIQLACLVG--SDYTTGIHGIGAVTALEILASFSGH 975

Query: 215 ENILINASRIKQKKRRENILEYAE 238
           +    +A  +  +   + ++++ +
Sbjct: 976 D---PSAQGVSNQSVLQTLIKFRD 996


>gi|184200503|ref|YP_001854710.1| DNA polymerase III subunit epsilon [Kocuria rhizophila DC2201]
 gi|183580733|dbj|BAG29204.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 232

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 64/216 (29%), Gaps = 33/216 (15%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST---- 440
                A F + T   D   ++ +  ++  +    D   +      D  V   +++     
Sbjct: 8   HQGPRACFDLETTGRDPQQARIVTASVVLVSPAGDV-LQEWEWLADPGVEIPEEAAAVHG 66

Query: 441 -------GKNTLTKEILSYLKKFFE---NEHFLKIGHNIKYDKLVL----HRYGI---SM 483
                   +     E+ + L +       E    +  N  YD  VL     R+G+     
Sbjct: 67  VSTDRARAEGRPVAEVAAELSEVLAGFWREGVPVLAFNAAYDLTVLTRETERHGLPAPEP 126

Query: 484 RGFEDIMLMSYVLDSGRSSH-----DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
               D     +VL+     +      + ++ +++          S + ++  ++++ +  
Sbjct: 127 FPVLDP----FVLNKQVHRYRRGKRTLGALCEEY-GVVLDAAHTSAEDALATERLAAALA 181

Query: 539 QEHA-IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
              A +      L    +         L   + R D
Sbjct: 182 DRFAELRQPAAALHEAQIGWAAEQAASLQEYFRRKD 217


>gi|269837031|ref|YP_003319259.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786294|gb|ACZ38437.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
           thermophilus DSM 20745]
          Length = 966

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 58/175 (33%), Gaps = 15/175 (8%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDD-----TSFKVETIFIDLSVHTSQDSTGKN 443
             +  +    MD    + I IA +   + D       S       I  ++ +      K+
Sbjct: 5   YVALDLEATGMDPERDEIIEIA-AIKFRNDRVLDRWESLVRPRGPIPFNITSLTGIGAKD 63

Query: 444 TLTKEILSYLKKFFEN--EHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGR 500
                I   +     +   +   +G + ++D  +L   G+ ++    D   ++ +L    
Sbjct: 64  VRRAPIFPVVAPRLRDFVRNHPIVGQSPEFDIQMLAGAGLRLQNPLYDTFQLATILIPDL 123

Query: 501 SSHDIASIAQK------WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            ++++A+IA +             ++  +    + +  I  S   E     + + 
Sbjct: 124 PAYNLATIAARLGVSVPHQHRAMADVETTMAVFLGLQDILLSHDAETLARLAELA 178


>gi|255577346|ref|XP_002529553.1| exonuclease, putative [Ricinus communis]
 gi|223530965|gb|EEF32822.1| exonuclease, putative [Ricinus communis]
          Length = 576

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 71/199 (35%), Gaps = 29/199 (14%)

Query: 62  AVIFDYP----AVTFRNEIYPDYKANRPKIPEMLLP----------QLPLVRLATQAFGI 107
            V+FD        T  +E +   ++NR    E L            Q  +      A  +
Sbjct: 77  VVVFDGASIPCKATTEHERHRRRESNRKLAMEKLEQGNVNAANEFFQRAVSITPLMAHQL 136

Query: 108 PAI--------EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV- 158
             I         +  +EAD  +A  + +  ++G    +I+ D DL+      T       
Sbjct: 137 IQILRSEKVEFVVAPYEADAQLAYLSSLDAEKGGIAAVITEDSDLLAYGCQATVFKMDRF 196

Query: 159 -KEEKIDIEHVIKKWGIPPE-KMVCLQALTGDSI----DNIPGIPGIGYKTAALLLQEYG 212
              E+I ++ V       P  +    +  TG  +    D +P +PGIG   A   + +Y 
Sbjct: 197 GNGEEIVLDKVYNAVACKPSFQHFDRELFTGMCVLAGCDFLPSVPGIGIVKAHSFVVKYR 256

Query: 213 NLENILINASRIKQKKRRE 231
           NL+ +L      K  +  E
Sbjct: 257 NLDRVLSVLKLEKGNQMPE 275


>gi|209878504|ref|XP_002140693.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209556299|gb|EEA06344.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 496

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 14/145 (9%)

Query: 89  EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148
             +  Q  ++       GI  I    +EAD  ++         G+   +I+ D D++   
Sbjct: 130 PDIAHQ--VIEELRDHHGIECIVAP-YEADAQLSYLCRT----GYVDAVITEDSDMLVFG 182

Query: 149 SPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVCL----QALTGDSIDNIPGIPGIGYK 202
           SP T      K    ++     + + GI  + +          T    D +    G+G K
Sbjct: 183 SPCTIYKHDDKTGICRVIYWGDLPRSGILRQNIFTYEMFVLGCTLTGCDYVKSPQGVGIK 242

Query: 203 TAALLLQE-YGNLENILINASRIKQ 226
           TA  L+QE YG+LE I++    I +
Sbjct: 243 TAMKLVQEYYGDLERIILQLQTIGK 267


>gi|52424920|ref|YP_088057.1| potassium efflux protein KefA [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306972|gb|AAU37472.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 1118

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 13/153 (8%)

Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264
             L+Q   + + +L   +  KQK   E +    +  R +R L   +        +E    
Sbjct: 52  KALVQNLQDAQELLAQIA--KQKADNEKL--NKDIDRSTRTLAESKA------NIERFKK 101

Query: 265 EDCNGPRLISFLKALEFTKLINR-VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRD 323
           ++    +L    + L  T L +R  + T +      E + L+ N +  K      +    
Sbjct: 102 QEKTVEQLKEDFRKLSLTTLQDRSESATENLQNLQAELLTLNANLSGQKTAPERAQAALT 161

Query: 324 TTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356
             +K SQ  +L+ Q S +N E+T Q     +L 
Sbjct: 162 ENLKQSQ--ALNSQLSNVNIEKTLQTKLTAQLA 192


>gi|169842239|ref|ZP_02875344.1| hypothetical protein cdivTM_34052 [candidate division TM7
           single-cell isolate TM7a]
          Length = 38

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRM 780
           SQ ELR+ A +A    L   F N +DIH +
Sbjct: 5   SQFELRLAAIMAGDEDLINDFNNDIDIHTL 34


>gi|16760707|ref|NP_456324.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29141535|ref|NP_804877.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|25289178|pir||AB0725 ribonuclease D [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503004|emb|CAD05500.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137162|gb|AAO68726.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 375

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +               
Sbjct: 2   NYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANV--------A 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G     
Sbjct: 54  LIDPLGISDW--------------SPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--LSWGFASMVEEYTGVA---LDKSESRTDWLARPLSERQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVWYLLPIAKKL 166


>gi|327356611|gb|EGE85468.1| 3'-5' exonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 270

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
             LK   E     K+  +++ D   L   +GI ++G EDI LM
Sbjct: 79  KSLKSILECPVTPKVFFDVRNDSNALFFHFGIRLQGIEDIQLM 121


>gi|261196313|ref|XP_002624560.1| 3'-5' exonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239587693|gb|EEQ70336.1| 3'-5' exonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239614653|gb|EEQ91640.1| 3'-5' exonuclease [Ajellomyces dermatitidis ER-3]
          Length = 305

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
             LK   E     K+  +++ D   L   +GI ++G EDI LM
Sbjct: 79  KSLKSILECPVTPKVFFDVRNDSNALFFHFGIRLQGIEDIQLM 121


>gi|194445618|ref|YP_002041074.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|200390008|ref|ZP_03216619.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|194404281|gb|ACF64503.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|199602453|gb|EDZ00999.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 375

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +               
Sbjct: 2   NYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANV--------A 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G     
Sbjct: 54  LIDPLGISDW--------------SPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--LSWGFASMVEEYTGVA---LDKSESRTDWLARPLSERQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVWYLLPIAKKL 166


>gi|16765158|ref|NP_460773.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194448143|ref|YP_002045863.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197262566|ref|ZP_03162640.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205358997|ref|ZP_02666341.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|16420349|gb|AAL20732.1| RNase D [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194406447|gb|ACF66666.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197240821|gb|EDY23441.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205339484|gb|EDZ26248.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261247002|emb|CBG24819.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993774|gb|ACY88659.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158341|emb|CBW17840.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332988704|gb|AEF07687.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 375

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +               
Sbjct: 2   NYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANV--------A 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G     
Sbjct: 54  LIDPLGISDW--------------SPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   AS+ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--LSWGFASMVEEYTGVA---LDKSESRTDWLARPLSERQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVWYLLPIAKKL 166


>gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
 gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
          Length = 245

 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 52/179 (29%), Gaps = 40/179 (22%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D      +    +        + +   ++++      + +   + L+ + L+
Sbjct: 6   FDTETTGLDPLDGHRVVEIGAVEMVNGALTGRTFHVYVNPERDMPEAAYRVHKLSSQFLA 65

Query: 452 YLKKFFENEHF-----------LKIGHNIKYDKLVLHRY----GI-----SMRGFEDIML 491
             K  F++              + + HN  +D   +  +    G+           D + 
Sbjct: 66  D-KPIFKDPAIGQAFYQFCEGAVLVAHNASFDCKFMQHHLDEIGLPWAWGEPGDIVDTLQ 124

Query: 492 MSY--------VLDSGRSSHDIA-----------SIAQKWLSYTRKEILKSRKSSIPID 531
           ++          LD+      I             +  + L+    E+   R+  +  D
Sbjct: 125 IARKRFPGSPSSLDALCQRFGIDLTEREAQGHGALLDSRLLAEVYIELTGGRQGGLIFD 183


>gi|292492317|ref|YP_003527756.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4]
 gi|291580912|gb|ADE15369.1| ERCC4 domain protein [Nitrosococcus halophilus Nc4]
          Length = 236

 Score = 39.6 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 195 GIPGIGYKTAALLLQEYGNLENIL-INASRI 224
           G+PGIG + A  LL  +G++E +L  +   +
Sbjct: 173 GLPGIGPERARQLLAHFGSVEAVLNAHLEEL 203


>gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
 gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
          Length = 1036

 Score = 39.6 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 425 LHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQFDEFIDPGHPLSAFTTELTGI 484

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T     G   + + +L   + F +    + + HN  +D   ++    R+ + +  +   D
Sbjct: 485 TDNHVRGSKPILQ-VLQEFQNFCQ--GTVLVAHNATFDVGFMNANYERHNLPLITQPVID 541

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 542 TLEFARNLYPEYKRHGLGPLTKRF 565


>gi|288958469|ref|YP_003448810.1| ribonuclease D [Azospirillum sp. B510]
 gi|288910777|dbj|BAI72266.1| ribonuclease D [Azospirillum sp. B510]
          Length = 396

 Score = 39.6 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 7/186 (3%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSY 452
             TD + AF          T+D +             + V     +   + L + I L+ 
Sbjct: 5   TTTDALQAFCQSLAGTEYITVDTEFLREKTYWPQLCLVQVGGPDGAVAIDPLAEGIDLTP 64

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L     +   LK+ H  + D  +     G       D  + + V   G S     ++  K
Sbjct: 65  LFALMSDPSVLKVFHAARQDVEIFWHLSGQIPHPLFDTQVAAMVCGFGESV-GYETLVTK 123

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
                   I KS + +    +    +   +A+ +   +   +  L+ +L      H  E 
Sbjct: 124 LAG---ARIDKSSRFTDWSHRPLTERQLTYALSDVIHLRPAYEKLKRRLARSGRSHWLEE 180

Query: 572 LDKPMI 577
            +  ++
Sbjct: 181 -EMAIL 185


>gi|269138811|ref|YP_003295512.1| ribonuclease D [Edwardsiella tarda EIB202]
 gi|267984472|gb|ACY84301.1| ribonuclease D [Edwardsiella tarda EIB202]
 gi|304558803|gb|ADM41467.1| Ribonuclease D [Edwardsiella tarda FL6-60]
          Length = 371

 Score = 39.6 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 60/198 (30%), Gaps = 29/198 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I ++  +++  ++       +          ++ +   + +   +           
Sbjct: 3   KYQLITSSSALKEVCERASACPYIALDTEFVRTRTYYPQLGLVQLYDGETLS-------- 54

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG 485
           +   L +   Q                     N   +K+ H    D ++ LH +    + 
Sbjct: 55  LIDPLPISDWQP--------------FVDLLRNPQVVKLLHAGSEDLEVFLHDFQTLPQP 100

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++      S    A++   +L     ++ KS   +  + +    +  ++A  
Sbjct: 101 LIDTQILAAFTGRPLSS--GFAAMVSAYLQV---DLDKSESRTDWLARPLSERQCDYAAA 155

Query: 545 NSNVILQLWLLLRPKLIV 562
           +   +L +   L  ++  
Sbjct: 156 DVYYLLPMAHKLLAEVEA 173


>gi|330998346|ref|ZP_08322170.1| 3'-5' exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329568452|gb|EGG50257.1| 3'-5' exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 206

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 55/128 (42%), Gaps = 11/128 (8%)

Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDIMLMSYVLDSGRSSHDIAS 507
           +   +K+  ++E+ LK+G +++ D   LH+ G    R F D  L  YV      +  I  
Sbjct: 86  VTDSVKRLLQDENVLKVGLSLRDDFASLHKRGEFEPRAFLD--LQDYV-----RAFGIED 138

Query: 508 IAQK--WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565
           ++ +  + +   ++I K ++ +     +     + +A  ++   ++L+  L   L   K 
Sbjct: 139 MSLQKLYANIFGQKISKGQRLTNWEADVLTEGQKLYAATDAWACIRLYRELEA-LRENKD 197

Query: 566 LHVYERLD 573
             +    +
Sbjct: 198 YKLAVVQE 205


>gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 1448

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441
             L       F + T  + A + K   I +S    KD         FID     S+ +T 
Sbjct: 421 DHLLNSTYVIFDVETTGLSAIYDKV--IELSATKMKDGKVLDRFDEFIDPGFPLSEQTTE 478

Query: 442 KNTLTKEILSYLK------KFFEN--EHFLKIGHNIKYDKLVL----HRYGIS--MRGFE 487
             ++T +++   K      K F++     +  GHN+ +D   +     R+ +    +   
Sbjct: 479 LTSITDDMVQGSKSEEEVFKMFQDFCAGSIIAGHNVSFDMGFMNTGYQRHHLPEITQPVI 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + ++  L      + + ++++K+
Sbjct: 539 DTLPLARFLYPDLRGYRLNTLSKKF 563


>gi|238919524|ref|YP_002933039.1| ribonuclease D [Edwardsiella ictaluri 93-146]
 gi|238869093|gb|ACR68804.1| ribonuclease D, putative [Edwardsiella ictaluri 93-146]
          Length = 371

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/198 (11%), Positives = 64/198 (32%), Gaps = 29/198 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
            Y  I ++  +++  ++       +          ++ +   + +               
Sbjct: 3   KYQLITSSSALKEVCERASACPYIALDTEFVRTRTYYPQLGLVQL--------------- 47

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG 485
                  +  +  +  + LT            N   +K+ H    D ++ LH +    + 
Sbjct: 48  -------YDGEMLSLIDPLTISDWQPFVDLLRNPQVVKLLHASSEDLEVFLHDFQTLPQP 100

Query: 486 FEDIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SGR  S   A++   +L     ++ KS   +  + +    +  ++A  
Sbjct: 101 LIDTQILA--AFSGRPLSSGFAAMVSAYLQV---DLDKSESRTDWLARPLSERQCDYAAA 155

Query: 545 NSNVILQLWLLLRPKLIV 562
           +   +L +   L  ++  
Sbjct: 156 DVYYLLPMAHKLLAEVEA 173


>gi|152997270|ref|YP_001342105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinomonas sp. MWYL1]
 gi|205816876|sp|A6W0E1|MNMA_MARMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150838194|gb|ABR72170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinomonas sp. MWYL1]
          Length = 390

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 21/154 (13%)

Query: 72  FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ-AFGIPAIEIQGFEADDIIAT--YTYIA 128
           F +    +YKA R   P++L  +    +   + A  +           D IAT  Y    
Sbjct: 108 FEH-FLAEYKAGRTPNPDILCNKEIKFKAFLEYAMALN---------ADYIATGHYVRRG 157

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
           EK G  + +   D +  Q         D + +    +  + +K  +   ++     L   
Sbjct: 158 EKNGEPLLLKGLDGNKDQSYFLYAVGKDEIAKTLFPVGEL-EKTEV--RRLAEEFGLITH 214

Query: 189 SIDNIPGIPGIGYKTAALLLQEY-----GNLENI 217
           +  +  GI  IG +     L++Y     G++E +
Sbjct: 215 NKKDSTGICFIGERRFKDFLEQYLPAQPGDIETL 248


>gi|21397264|gb|AAM51828.1|AC105730_2 Putative nucleolar protein [Oryza sativa Japonica Group]
 gi|22773226|gb|AAN06832.1| Putative nucleolar protein [Oryza sativa Japonica Group]
          Length = 523

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 21/135 (15%)

Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415
           + +    + +  +T + +   +    +KL+++   +  +                     
Sbjct: 133 EPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLE-------------------- 172

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
                SF+  T  + +S  T         L   I  YLK+ F++    K+ H    D + 
Sbjct: 173 HNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMW 232

Query: 476 LHR-YGISMRGFEDI 489
           L R + I +    D 
Sbjct: 233 LQRDFHIYVCNLFDT 247


>gi|297563874|ref|YP_003682847.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848323|gb|ADH70341.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 277

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 25/152 (16%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT----SFKVETIFIDLSVH------ 434
            T     F   T + D   +  ++ A+   + K  T        E     ++VH      
Sbjct: 53  HTTPLLGFDTETSSRDPDTAFLVSAALVDREGKARTWLVDPGPREIPADAVAVHGISTER 112

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS-------- 482
              +        +EI   L     +   L +  N  YD  VL     R+G++        
Sbjct: 113 ARAEGRPAGECLEEIGQALADQLSSGQGL-VVFNAPYDLRVLSGEMRRHGLTPLAERLSG 171

Query: 483 -MRGFEDIMLMSYVLDSGRSSH-DIASIAQKW 512
            +    D +++   ++  R    ++ ++ + +
Sbjct: 172 PLAPVVDPLVIDRGVEPYRRGKRNLGAMCEYY 203


>gi|24987745|pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
           Pyrococcus Horikoshii
 gi|24987746|pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
           Pyrococcus Horikoshii
          Length = 343

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 78/249 (31%), Gaps = 68/249 (27%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +D  +    A Y      R+ DG P         + ++G F   +  +    +       
Sbjct: 26  IDALN----AIYQFLSTIRQEDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAY---- 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKI----PEMLLPQL-------------------PL 97
              +FD     F+ +     +  R +      E L                         
Sbjct: 78  ---VFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEMLIED 134

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   Q  GIP I+       +  A   Y+A K    V    S D D +   +P      
Sbjct: 135 AKKLLQLMGIPIIQAP----SEGEAQAAYMASK--GDVYASASQDYDSLLFGAPRLIRNL 188

Query: 157 TVKEEKIDI---------------EHVIKKWGIPPEKMVCLQALTGDSIDNIPG-IPGIG 200
           T+  ++                  + V+K+  I  EK++ L  L G   D  PG + GIG
Sbjct: 189 TITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVG--TDYNPGGVKGIG 246

Query: 201 YKTAALLLQ 209
            K A  +++
Sbjct: 247 PKKALEIVR 255


>gi|298705698|emb|CBJ28936.1| hypothetical protein Esi_0124_0050 [Ectocarpus siliculosus]
          Length = 955

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 402 FHSKPIAIAISTLDQ-KDDTSFKVETIFIDLSVHTS----QDSTGKNTLTKEILSYLKKF 456
                + +           T   V T+ + L   T+         K T +      L+  
Sbjct: 418 LQGNVLGLDCEWEPSLGGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNL 477

Query: 457 FENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
            EN    K+G NI  D   L R YGI +    D
Sbjct: 478 LENPSIAKVGVNINSDATYLERDYGIEVANTVD 510


>gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon
 gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 215

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 21/152 (13%)

Query: 379 QWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDDTS------FKVETIFIDL 431
            WV  +    +  +F   T  + A   + I I   T D+K   +      F    I  D+
Sbjct: 4   DWVFAVHEHVAFTAFDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDRAIPPDV 63

Query: 432 S--VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM------ 483
           S   H + D         EI+S   +F +    + + HN  +D   L    +S+      
Sbjct: 64  SKINHITDDMLVNKPRFCEIVSDFSRFIK--GTVLVAHNANFDVEFL-NAELSLCKKQPL 120

Query: 484 -RGFEDIMLMSYVLDSGRSSHD--IASIAQKW 512
                D   M+  +  G   H   + ++A ++
Sbjct: 121 SHKVVDTYAMAQAVFPGLGRHQYRLQNLALQF 152


>gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           Iowa]
 gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa]
          Length = 229

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 19/139 (13%)

Query: 392 FKIITDTMDAFHS-KPIAIAIS-----TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
               T  +D     + + I         L  ++   +      +    +     +G+   
Sbjct: 9   LDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISGEFLK 68

Query: 446 TKEILSYLK-KFFE-NEHFLKIGHNIKYDKL-------VLHRYGI---SMRGFEDIMLMS 493
            K +   +   F E       I HN  +D         +L R  I    +    D ++M+
Sbjct: 69  DKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMA 128

Query: 494 YVLDSGRSSHDIASIAQKW 512
             +  G S +++ ++ +++
Sbjct: 129 RSIFPG-SKYNLDALCKRF 146


>gi|289706235|ref|ZP_06502598.1| putative ribonuclease D [Micrococcus luteus SK58]
 gi|289557074|gb|EFD50402.1| putative ribonuclease D [Micrococcus luteus SK58]
          Length = 416

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 7/148 (4%)

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLHRYGISMRGFEDIML 491
           V   ++  G   +  E L  L    E       I H    D   L   G+      D  L
Sbjct: 67  VQLKREGAGIWLVDPEALDGLAPLQEALAGVEWILHAASQDLPCLAEQGLRPDRLFDTEL 126

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
            + V  +G     +A++ ++ L  T   + K   ++    +     +  +A  +  +++ 
Sbjct: 127 AARV--AGLPRVGLAAVLEELLGVT---LAKEHSAADWSVRPLPEAMLAYAALDVELLVP 181

Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDV 579
           L   L  +L  +  L   E+ +   +  
Sbjct: 182 LREALIARLEADGKLAWAEQ-EFEHVRT 208


>gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 290

 Score = 39.6 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 7/173 (4%)

Query: 311 NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK 370
           N G    T +      +   F +       ++ +       +   + +     N   + K
Sbjct: 48  NIGNGEATLVYNTNNEQGYAFKTTRKSKQVVDLDGMLFVKHVVNQETVEHGFSNAAKFHK 107

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
               + ++      +  G  +  I T  ++    + ++I     D  +      + I + 
Sbjct: 108 AHKAEKMRASAAAAKPKGFVAVDIETTGLNTETDQILSIGAVKHDGTEFYRLIKQDIDVP 167

Query: 431 -----LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                L+  TS+  + +    ++ L  L  F  N     +G+N ++D   L+R
Sbjct: 168 KQIVELTGITSEMLSKEGVPLQDALEELTDFVGN--VPIVGYNFRFDSAFLNR 218


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 79/222 (35%), Gaps = 36/222 (16%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + +D    I N KD     + +E      F I T   D F+ K I I    +  ++ 
Sbjct: 401 EAYVVDDEQDLITNPKD-----KMIEDEIYVVFDIETTGFDPFNDKIIEIGAVKMRGREV 455

Query: 420 TSFKVETIFI--DLSVHTSQDSTGKNTL---TKEILSYLKKFFE-NEHFLKIGHNIKYDK 473
                E +     +    ++ +T  + +    ++I + L +F E       + HN K+D 
Sbjct: 456 IGEFSEFVNPEIPIPQKITELTTITDEMVANAEKIETVLPRFLEFCTGTTVVAHNAKFDV 515

Query: 474 LVLHR----YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528
             + +     G+       D + ++  L      + +A++  K+   T +          
Sbjct: 516 GFIKQKTIDQGLEYSPSVIDTLPLARTLLPELRGYGLANLV-KYFGITLE---------- 564

Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
                        A++++    +++      ++ + +L + E
Sbjct: 565 ---------THHRAVDDAKATAEVFQKFLNMILSKGILKLIE 597


>gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813]
          Length = 1468

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 425 LHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQFDEFIDPGHPLSAFTTELTGI 484

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T     G   + + +L   + F +    + + HN  +D   ++    R+ + +  +   D
Sbjct: 485 TDNHVRGSKPILQ-VLQEFQNFCQ--GTVLVAHNATFDVGFMNANYERHNLPLITQPVID 541

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 542 TLEFARNLYPEYKRHGLGPLTKRF 565


>gi|83593408|ref|YP_427160.1| ribonuclease D [Rhodospirillum rubrum ATCC 11170]
 gi|83576322|gb|ABC22873.1| Ribonuclease D [Rhodospirillum rubrum ATCC 11170]
          Length = 386

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 22/127 (17%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  TKD+  +  +L T    +          +  K   I ++   +             
Sbjct: 3   LISTTKDLADFCARLSTESFVTVDTEFMREKTYWPKLCLIQLAGTTEA--------HCVD 54

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFED 488
            L+                 ++ L     NE  LK+ H  + D ++ LH  G   +   D
Sbjct: 55  PLAPDID-------------MAPLFALMANESVLKVFHAARQDLEIFLHESGHLPKPIFD 101

Query: 489 IMLMSYV 495
             + + V
Sbjct: 102 TQVAAMV 108


>gi|238796317|ref|ZP_04639826.1| Ribonuclease D [Yersinia mollaretii ATCC 43969]
 gi|238719762|gb|EEQ11569.1| Ribonuclease D [Yersinia mollaretii ATCC 43969]
          Length = 395

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 59/195 (30%), Gaps = 29/195 (14%)

Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423
           +  +Y  I     +QQ  ++       +          ++ +   I +   +Q       
Sbjct: 21  DVLNYQLITTNDGLQQVCEQARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPL 80

Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGIS 482
             T +                         ++  ++ + +K  H    D  V    +   
Sbjct: 81  PITEWQP----------------------FRELLQDLNVVKYLHAGSEDLEVFLNAFDRM 118

Query: 483 MRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541
                D  +++    SGRS S   A +  ++      E+ KS   +  I +    +  ++
Sbjct: 119 PTPMIDTQVLA--AFSGRSLSCGFAMLVNEFEGV---ELDKSESRTDWIARPLSEKQCDY 173

Query: 542 AIENSNVILQLWLLL 556
           A  +   +L L   L
Sbjct: 174 AAADVFYLLPLATKL 188


>gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 1468

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 425 LHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQFDEFIDPGHPLSAFTTELTGI 484

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T     G   + + +L   + F +    + + HN  +D   ++    R+ + +  +   D
Sbjct: 485 TDNHVRGSKPILQ-VLQEFQNFCQ--GTVLVAHNATFDVGFMNANYERHNLPLITQPVID 541

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 542 TLEFARNLYPEYKRHGLGPLTKRF 565


>gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R]
 gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316]
 gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
 gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 2603V/R]
 gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae
           NEM316]
 gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
          Length = 1468

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 425 LHEATYVVFDVETTGLSAANNDLIQIAASKMFKGNIIEQFDEFIDPGHPLSAFTTELTGI 484

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
           T     G   + + +L   + F +    + + HN  +D   ++    R+ + +  +   D
Sbjct: 485 TDNHVRGSKPILQ-VLQEFQNFCQ--GTVLVAHNATFDVGFMNANYERHNLPLITQPVID 541

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 542 TLEFARNLYPEYKRHGLGPLTKRF 565


>gi|294677027|ref|YP_003577642.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294475847|gb|ADE85235.1| ribonuclease D-2 [Rhodobacter capsulatus SB 1003]
          Length = 384

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 67/207 (32%), Gaps = 25/207 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T  ++Q+  + +     +          + SK   + ++ L  K+  +  V+ + 
Sbjct: 2   QTITTTDALEQFCTRAKAAPYVTVDTEFLRERTYWSKLCLVQMA-LPGKEGEAVLVDPLV 60

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFE 487
             LS                 L  L   F ++  +K+ H  + D ++     G+      
Sbjct: 61  EGLS-----------------LEPLYDLFRHQATVKVFHAARQDLEIFFTEAGVFPLPLF 103

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE-HAIENS 546
           D  + + V   G       ++ +K      K+ L          +   +  Q+ +A+ + 
Sbjct: 104 DTQVAAMVCGFGEQV-GYETLVKK----IAKQSLDKTSRFTDWSRRPLTDAQKAYALADV 158

Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLD 573
             +  ++  L  +L         E  +
Sbjct: 159 THLRVIYEFLSKELRKSGREKWVEEEE 185


>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 18/145 (12%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
             +    F I T  +D+ + + I I    L     T+   +          S ++   + 
Sbjct: 5   NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHG 64

Query: 445 LTKEIL----------SYLKKFFENEHFLKIGHNIKYDKLV----LHRYG---ISMRGFE 487
           +T E L          S    FF  ++   I HN K+D       L R     +      
Sbjct: 65  ITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRII 124

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D + ++       S +D+ S+ +++
Sbjct: 125 DTLSIARRKHPS-SRNDLNSLCKRY 148


>gi|254416561|ref|ZP_05030312.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196176527|gb|EDX71540.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 303

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 88/272 (32%), Gaps = 33/272 (12%)

Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQ--DSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           +A    D    +  +V     DL+  +    D   +  L  E ++   K   N    K+ 
Sbjct: 29  VADYKTDTPQLSLIQVLADGNDLTAESVGILDVLYQPELADEFIA---KVMYNPAIEKVF 85

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMS----YVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           HN  YD+  L ++    +     + ++    Y      + + + ++ + +      ++ K
Sbjct: 86  HNASYDRKFLGKH--KAKNVTCTLELAKTIPYYRLPVPN-YQLKTLTE-YFGICP-QVDK 140

Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           + ++     +    +  ++A ++   +  L   L   L + +     E ++   +     
Sbjct: 141 TEQTGDWRKRPLSPRQLDYAAKDVVYVAHLHRHL---LDLAQPDPATEDIEALTLRYRQI 197

Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK---------QLGDIL 633
                       L     +I + L +  +         F LSS           QL ++ 
Sbjct: 198 EHRW------KQLDTEIQQIKERLKAAMQAQNVKKVHGFRLSSQNRTSKKVAFHQLAEVT 251

Query: 634 FT-KLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
               ++     +      +   + +E++   +
Sbjct: 252 KKLGIELDISVQLTKSLQQKLGEVMEELPVEE 283


>gi|46198769|ref|YP_004436.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB27]
 gi|55980782|ref|YP_144079.1| DNA polymerase III subunit epsilon-like protein [Thermus
           thermophilus HB8]
 gi|46196392|gb|AAS80809.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB27]
 gi|55772195|dbj|BAD70636.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
           HB8]
          Length = 624

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 103/343 (30%), Gaps = 57/343 (16%)

Query: 219 INASRIKQKKRR-ENILEYAE-----TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL 272
               R+K K      ++E  E      A+   ++     D  I   L+ L     +   L
Sbjct: 237 ERLHRLKDKAAGVRALVEVLERETTGEAKRLLQVAREALD-EIQGLLQDL-APSPHEEVL 294

Query: 273 ISFLKALEFTKLINRVATT--YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ 330
              L  L   +L  R+A T  +  D      +V        +G+A   E   +  ++   
Sbjct: 295 AQDLLRLLAGRLEARLALTPGWALDPEAEGLLVQADTFALAEGLAKTLEGTEEVFLRGEA 354

Query: 331 FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390
                 + + +   + P+   L      +   +  +    ++     +   + L+   + 
Sbjct: 355 EGEGLFRLTVLLPREAPRPHPLLAEAAEATGSLWREGSRLVLLLPARKAPPEALKEAPAP 414

Query: 391 ---------------------------SFKIITDTMDAFHSKPIAIA------------- 410
                                      +F + T  +D      +A+A             
Sbjct: 415 RALVYDLTLLQVPPGLEDVPLDQLLYTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQE 474

Query: 411 -ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469
               L           T    L+    +D        + +L   + F ++   + + HN 
Sbjct: 475 VFEALVNPGRPISPAATAVHGLTAEMLRDKP----PLEAVLPAFRAFVQD--TVLVAHNG 528

Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
            +D   L R G+      D +L++ +L      + + ++A ++
Sbjct: 529 AFDLAFLRRAGLDQPPLLDTLLLAQLLFPDLKDYRLEALAHRF 571


>gi|114046520|ref|YP_737070.1| 3'-5' exonuclease [Shewanella sp. MR-7]
 gi|113887962|gb|ABI42013.1| 3'-5' exonuclease [Shewanella sp. MR-7]
          Length = 303

 Score = 39.6 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 16/181 (8%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS----TGKN 443
              +   +   +    S+    ++   D +   SF+       LS+     S      + 
Sbjct: 103 ELVTPDTLATALQQLSSE----SVLGFDTETRASFERGVQH-PLSLVQLATSDTCYLFQR 157

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSS 502
            +  E L+ LK   ENE  LK+G  ++ D   L R + I +    D+      L +G+  
Sbjct: 158 AVLGERLAELKPLLENEQILKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGAGKEM 217

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIP-IDKISDSQVQ-EHAIENSNVILQLWLLLRPKL 560
                +A    +   K I K +K ++    ++  SQ Q ++A+ ++      +  L  KL
Sbjct: 218 GTRQLVA----ALLHKRIDKPKKITLSNWQQVPLSQAQIQYAVLDALAANLCFWQLIDKL 273

Query: 561 I 561
            
Sbjct: 274 Q 274


>gi|304383100|ref|ZP_07365575.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335786|gb|EFM02041.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 218

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           S +K F E+    KIG ++  D + L + G      F D  L  +V +      D+  +A
Sbjct: 89  SSIKYFLEDSTVPKIGLSLGDDVMALQKRGSFIPGNFID--LQDHVKE--IGIQDLG-LA 143

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569
           + + +   + I K  + +     +   + + +A  ++   ++L+     +L  +    + 
Sbjct: 144 KLYANIFGQRISKREQLTNWDADVLTEKQKRYAATDAWACIKLYEEFN-RLKKDHAYQLV 202

Query: 570 ERLDKPMIDVV 580
              ++   D +
Sbjct: 203 TVQEERQSDAL 213


>gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
 gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 231

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 36/179 (20%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               T  +D     + + I           + +V   +I+       ++   + L+ E L
Sbjct: 6   LDTETTGLDPLRGDRLVEIG-CVEIYNRMPTGQVYHQYINPERDMPAEAFAVHGLSSEFL 64

Query: 451 SYLKKFFEN---------EHFLKIGHNIKYDKLV-------LHRYGISMRGFEDIMLMS- 493
           +  K  F                + HN  +D          L R  I      D +L++ 
Sbjct: 65  AD-KPVFAQVADAFIDFIGDAPLVIHNASFDIGFINAELARLSRAAIPRERLVDTLLLAR 123

Query: 494 ----------------YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536
                           Y +D+ R +   A +  + L+    +++ +R+S + + ++   
Sbjct: 124 RKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILAEVPSE 182


>gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 861

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 88/269 (32%), Gaps = 46/269 (17%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI---------------STLD 415
           I   +   + V  LE      + + +   D    + I IA                    
Sbjct: 476 IFEAEPYAKLVAGLEVGEVVVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERFINP 535

Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475
            K   + ++   F D  +    +S       K +L   K+F  + + + +GHN+ YD  +
Sbjct: 536 GKSVGTSQLVHGFTDAYLAEHGESP------KVVLEAFKEF--SNNRIIVGHNVNYDISI 587

Query: 476 ----LHRYGI---SMRGFEDIMLMSYVLDSGRSSHDIASIAQKW-LSYTR-----KEILK 522
               L R+ +     +   D + +         +H +  +++ + +++T       +I+ 
Sbjct: 588 LSHELARHNLGEPQFKAVYDTLDIFRRFYPTLENHKLGFLSKYFPINHTPTHNAMDDIIA 647

Query: 523 SRKSSI--------PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574
           + +  I        P        + ++    +  I      LR K+  +    +   +  
Sbjct: 648 TGQLLIYAVRENIMPTTTDRMVAINQYKAAFT-TIASQMATLRRKMHTDNPTELLAYI-M 705

Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEIS 603
             + V+   +  G     + ++ +   + 
Sbjct: 706 NQMGVLDYYKSHGEMAKVEHIRDLYRIME 734


>gi|304437027|ref|ZP_07396990.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369978|gb|EFM23640.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 180

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 17/120 (14%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
                  F   T     F S    + ++ ++   +T   V+ ++         D+   N 
Sbjct: 1   MQEKVLVFDTETTG---FRSDDEVLTLAVVNGVGETM--VDGMYAPARKAEWPDAERINR 55

Query: 445 LTKEILS----------YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF--EDIMLM 492
           ++  +++           L++ F     L +G+N ++D  +L + GI +      D+ML 
Sbjct: 56  ISPAMVAGCDPILAHREELERLFNAPDTLLVGYNTEFDIRLLAQSGIRITNPNRHDVMLA 115


>gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 502

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 22/198 (11%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447
           G A   I T    A       I I  +D+     +               ++  + T   
Sbjct: 11  GLAFVDIETTGGPAQRESITEIGIVQVDEDGVREWSTLVR----PASRIPETIQRLTGID 66

Query: 448 EILSYLKKFFEN---------EHFLKIGHNIKYDK----LVLHRYGISMRG-FEDIMLMS 493
           + +      FE+         +  L + HN ++D         R G+ MR      + +S
Sbjct: 67  DDMVADAPRFEDIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDMRPQVLCTVKLS 126

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550
             L      H +  + ++       +    L   +      +    +     I+ +   L
Sbjct: 127 RRLFPDHRRHGLDHLIERH-GLAVADRHRALGDARLLWQFWQKIHERFPPGHIDAAVREL 185

Query: 551 QLWLLLRPKLIVEKLLHV 568
                L P L  E++  +
Sbjct: 186 IGHPSLPPHLDPEQIADL 203


>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
 gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 1433

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 34/191 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVETIFIDLSVHTSQDST 440
           ++      F + T  +       I      I      D   F V+    ++S   +  + 
Sbjct: 395 IKNETYVVFDLETTGLSPIFDDIIEFGAQKILNGKVIDTLQFFVKP-NKEISEKITLITG 453

Query: 441 GKNTLTKEIL---SYLKKFFE-NEHFLKIGHNIKYDKLVLHRYGISMRGFE-------DI 489
            KN   +  +     LKK  E       + HN  +D   +    I    F+       D 
Sbjct: 454 IKNQDVENAISEKEALKKILEFMGDHTVVAHNATFDMNFI-NEKIEKYNFQESNLQIIDT 512

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           +++S +++       + ++A +              S I    I +S     A  +++V+
Sbjct: 513 LVVSKIIEPEAKKFSLENLASR--------------SGI----IYNSTEAHRADYDADVL 554

Query: 550 LQLWLLLRPKL 560
            ++W L   KL
Sbjct: 555 AKVWNLYIQKL 565


>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
 gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
          Length = 1144

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 123 LEDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 180

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 181 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 238

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 239 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 292


>gi|322704992|gb|EFY96581.1| putative Werner syndrome helicase [Metarhizium anisopliae ARSEF 23]
          Length = 545

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 56/203 (27%), Gaps = 14/203 (6%)

Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345
            R  TT + ++ N +   +     E     +E  +   +   +      +      +SE 
Sbjct: 99  QRPTTTINQESENSQGTEISKPNPEGDAEIVEPPLTPLSFNISPSLFHAARAAKAGSSES 158

Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405
                  +R             Y    +T + Q   +         F +           
Sbjct: 159 FWSHTMYQRTSDQGAVEKVKVHYCTSKHTTE-QVCRKHFLGEAVLGFDLEW--------- 208

Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465
                 ++       +  +  I     +     +         +   L+   E+ +  K+
Sbjct: 209 ---FPYASRSSGTRENVSLIQIASPGRIGLFHVAMFAKGEDDLVAPALRTIMEDPNVSKV 265

Query: 466 GHNIKYDKLVLHRY-GISMRGFE 487
           G +I+ D   +  Y G+ ++G  
Sbjct: 266 GVHIQGDCTRMKNYLGVQVQGVF 288


>gi|119482642|ref|XP_001261349.1| 3'-5' exonuclease/helicase (Wrn), putative [Neosartorya fischeri
           NRRL 181]
 gi|119409504|gb|EAW19452.1| 3'-5' exonuclease/helicase (Wrn), putative [Neosartorya fischeri
           NRRL 181]
          Length = 383

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 19/120 (15%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVL-----DS---GRSSH 503
           L+K  E+    K G  IK D   L  + GI++RG  ++  +  ++     D     R   
Sbjct: 207 LRKILESPKITKAGVAIKADCTRLKNFLGINVRGIFELSHLYKLVKYCQSDPALINRRPV 266

Query: 504 DIASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           +++   ++       +          +++   ++      ++A  +S   L L+  +  K
Sbjct: 267 NLSEQVEEHFGLPLAKDDDVRCGDWSTALNYRQV------QYAANDSYACLCLFNTMDAK 320


>gi|49475730|ref|YP_033771.1| ribonuclease D [Bartonella henselae str. Houston-1]
 gi|49238537|emb|CAF27773.1| Ribonuclease D [Bartonella henselae str. Houston-1]
          Length = 406

 Score = 39.6 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 453 LKKFFE---NEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           LK FF+   N+  +K+ H  + D   ++  G +      D  +   +   G S      I
Sbjct: 85  LKPFFDLMVNKKIVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSICGFGDSI-SYDQI 143

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
            Q+   Y   +   SR +      +S+ Q+  +A+ +   +  ++LLL+ +L   K  H 
Sbjct: 144 VQRCTGYQLDKS--SRFTDWSFRPLSEKQLL-YALADVTYLRDVYLLLKKQLEKNKRTHW 200

Query: 569 YER 571
            + 
Sbjct: 201 MDD 203


>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. HGF2]
 gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. HGF2]
          Length = 1448

 Score = 39.6 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 82/248 (33%), Gaps = 48/248 (19%)

Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419
           +  + + +   + N +DI+     LE      F + T  + +       I       KD 
Sbjct: 374 EMNMVDPALQIVRNIQDIE-----LEKGTYCVFDLETTGLSSRFDHI--IEFGGQIVKDR 426

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN--------EHFLKIGHNIKY 471
              K   +FI   V  S  +T    +T+E +   K F ++           + + HN  +
Sbjct: 427 ACIKSLQLFIKPPVALSAFTTELTGITEEHMKNAKSFADSIDEILDFIGDSILVAHNATF 486

Query: 472 DKLV----LHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525
           D       L R G    M    D + ++  + + R  + +  IA+ +             
Sbjct: 487 DYNFLNDELARIGRPPIMNPVIDTLDLARSMQADRKGYRLGQIARSYGIRY--------- 537

Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLL---------RPKLIVEKLLHVYERLDKPM 576
                    D  V   A  ++ V+ Q ++ +           +L   +    + ++    
Sbjct: 538 ---------DEDVAHRADYDAEVLAQTYMNMLNDLKHIKNLQELQDMQTAESFRKVRVKH 588

Query: 577 IDVVSQME 584
           + ++++  
Sbjct: 589 VTILAKNM 596


>gi|298705697|emb|CBJ28935.1| similar to Werner syndrome protein [Ectocarpus siliculosus]
 gi|299115153|emb|CBN75519.1| similar to Werner syndrome protein [Ectocarpus siliculosus]
          Length = 727

 Score = 39.6 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 7/106 (6%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQ-KDDTSFKVETIFIDLSVHTS----QDSTGKN 443
           + S   +TD         + +           T   V T+ + L   T+         K 
Sbjct: 98  APSVVALTDGC-QLQGNVLGLDCEWEPSLAGTTPNPVSTVQLSLPDGTAYCFQLQRGNKK 156

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED 488
           T +      L+   EN    K+G NI  D   L R YGI +    D
Sbjct: 157 TTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVD 202


>gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1]
 gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 247

 Score = 39.6 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 16/135 (11%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA------ISTLDQKDDTSFK 423
            I +  + + + QK+E          T  +D   +K I IA         LD  D     
Sbjct: 44  LIDSVNNDKIFNQKIEHAKFCVIDTETTGLDFETAKLINIAAVKVVNFKILDIYDVFINP 103

Query: 424 VETIFIDL--SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR--- 478
              I  +       + D         EIL    KF  +   + +GH++ +D  ++++   
Sbjct: 104 EIPIPEESIKWHGITDDMVKDKPTVAEILPDFLKFIRD--SVIVGHHVNFDLKMINKDLK 161

Query: 479 --YGISMRGFE-DIM 490
             YG  ++    D M
Sbjct: 162 LYYGSEIKNIWIDTM 176


>gi|148255258|ref|YP_001239843.1| ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1]
 gi|146407431|gb|ABQ35937.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1]
          Length = 384

 Score = 39.6 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 6/173 (3%)

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSY 452
             T  + A  ++     + T+D +         +   + + +  ++   + L + I L+ 
Sbjct: 5   TTTADLSAACARLAQHPVITVDTEFLRETTYYPLLCVVQMASPDEALVIDALAEGIDLTS 64

Query: 453 LKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
             +   NE  LK+ H  + D  ++ HR  I      D  + + VL  G S      + ++
Sbjct: 65  FFELMANEKVLKVFHAARQDIEIIWHRANIVPHPIFDTQVAAMVLGYGDSI-AYDQLVER 123

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
              +      K+ + +    +    +   +A  +   +  ++  L   L    
Sbjct: 124 ITGHRPD---KTHRFTDWSRRPLSKEQVHYAEADVTHLRDVFAALDADLKKRG 173


>gi|14520948|ref|NP_126423.1| flap endonuclease-1 [Pyrococcus abyssi GE5]
 gi|28380024|sp|Q9V0P9|FEN_PYRAB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
           structure-specific endonuclease 1
 gi|5458165|emb|CAB49654.1| fen1 FLAP endonuclease-1 [Pyrococcus abyssi GE5]
          Length = 343

 Score = 39.6 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 80/249 (32%), Gaps = 68/249 (27%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +D  +    A Y      R+ DG P         + ++G F   +  +    +       
Sbjct: 26  IDALN----AIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVY---- 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKI----PEMLLPQL-------------------PL 97
              +FD     F+ +     +  R +      E L                         
Sbjct: 78  ---VFDGKPPAFKKKELEKRREAREEAEIKWKEALAKGDIEEARKYAQRATKVNEMLIED 134

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   Q  GIP ++       +  A   Y+A K    V    S D D +   +P      
Sbjct: 135 AKKLLQLMGIPIVQAP----SEGEAQAAYMAGK--GDVYASASQDYDSLLFGTPRLVRNL 188

Query: 157 TVKEEK---------------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP-GIPGIG 200
           T+  ++               I +E V+K+  I  EK++ L  L G   D  P GI GIG
Sbjct: 189 TITGKRKMPGKDIYVEIKPELIVLEEVLKELKITREKLIELAILVG--TDYNPGGIKGIG 246

Query: 201 YKTAALLLQ 209
            K A  +++
Sbjct: 247 PKKALEIVK 255


>gi|325090671|gb|EGC43981.1| 3'-5' exonuclease/helicase [Ajellomyces capsulatus H88]
          Length = 935

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 70/215 (32%), Gaps = 22/215 (10%)

Query: 313 GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372
           G+       +  T      S  S QTS   ++ +  K +   L K          Y   +
Sbjct: 692 GLFNRVPFSKYHTKTAVGVSGSSTQTSNGQADPSRSKYWSYNLNKTPDGKEITVHYCTSL 751

Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA-IAISTLDQKDDTSFKVETIFIDL 431
            T +    +    +       +      +     +  +++  L  K+  +     +F   
Sbjct: 752 QTMERVAKL--FLSETIVGLDVEWKAQASAQDSLVGNVSVIQLASKERIAIFHLALFNP- 808

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDI- 489
                      N+L   +   LK+  E+   +K+G  I+ D   L+++ GI      ++ 
Sbjct: 809 ----------ANSLQHLLSPTLKRILESPDIVKVGVAIRADCTRLYKFLGIRTNNICEVS 858

Query: 490 ---MLMSYVLDS---GRSSHDIASIAQKWLSYTRK 518
               ++ + L+     +   ++A   ++ L     
Sbjct: 859 RLHKVVKHHLNPKLIDKRLVNLAQQVEEHLGLPLD 893


>gi|225556093|gb|EEH04383.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 963

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 93/291 (31%), Gaps = 35/291 (12%)

Query: 282 TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341
             L +R+  T     + I        +   K   ++++    +   ++   +     S I
Sbjct: 652 RSLPSRLNNTKGLRRSGIRSKPPPPPSKPTK---VKSKSHDTSPKLSASQPAKRKSESVI 708

Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401
            S+    K +   L K          Y   + T +    +    +       +      +
Sbjct: 709 RSKAGTSKYWSYNLNKTPDGKEITVHYCTSLQTMERVAKL--FLSETIVGLDVEWKAQAS 766

Query: 402 FHSKPIA-IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460
                +  +++  L  K+  +     +F              N+L   +   LK+  E+ 
Sbjct: 767 AQDSLVDNVSVIQLASKERIAIFHLALFNP-----------ANSLQHLLSPTLKRILESP 815

Query: 461 HFLKIGHNIKYDKLVLHRY-GISMRGFEDI----MLMSYVLDS---GRSSHDIASIAQKW 512
             +K+G  I+ D   L+++ GI      ++     ++ + L+     +   ++A   ++ 
Sbjct: 816 DIVKVGVAIRADCTRLYKFLGIRTNNICEVSRLHKVVKHHLNPKLIDKRLVNLAQQVEEH 875

Query: 513 LSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           L     +            +   ++      ++   +    LQL+ +L  K
Sbjct: 876 LGLPLDKDPEIRCGGWSKKLNYRQV------QYVATDPYAALQLFHVLEAK 920


>gi|163839979|ref|YP_001624384.1| DNA polymerase III subunit epsilon [Renibacterium salmoninarum ATCC
           33209]
 gi|162953455|gb|ABY22970.1| DNA polymerase III, epsilon chain [Renibacterium salmoninarum ATCC
           33209]
          Length = 228

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 19/115 (16%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI--------------STLDQKDDTSF 422
           +  W+        A+F + T   D   ++ ++ +I                 D   +   
Sbjct: 1   MNTWLD----GNRAAFDVETTGRDPRQARLVSASIVLVDANNDVVESHEWLADPGVEIPE 56

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477
            V  I    +     +      +  E+   L+ +F       +  N  YD  VL 
Sbjct: 57  AVTLIHGISTARARAEGAPIGAVVTEVAQVLRSYFA-AGTPVMAFNAPYDFTVLA 110


>gi|148245895|gb|ABQ52909.1| DNA polymerase [uncultured marine microorganism]
          Length = 119

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI       
Sbjct: 1   AKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQEHFGDNI------- 53

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362
                  +    +IDR  T + S F S S Q   +N  +  +K  L + Q +++  
Sbjct: 54  ------TLEFHDKIDRSVTHQLSLFDSSSTQVETVNKIEEEKKESLIKPQIITEIE 103


>gi|289665658|ref|ZP_06487239.1| ribonuclease D [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 210

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 64/179 (35%), Gaps = 11/179 (6%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++P  I + T   ++ T +    +   + +   ++    + L   +   LK++      +
Sbjct: 18  ARPSRIGLDTEFIRERTYWPQLAL---VQLAIGEEILLIDPLIPGMNEALKEWLTATDIV 74

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+   D +      G+  R   D  + +       +        QK +      +L 
Sbjct: 75  KVMHSASEDLVTFKCACGVLPRPLFDTQIAA-----ALAGVGGGMGYQKLVQEVTGTLLT 129

Query: 523 SRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDV 579
             +  S  + +       E+A ++   +  +   L  +L   ++L  + E  ++ +  V
Sbjct: 130 KGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQDRLGWLAEDAERLLATV 188


>gi|226293213|gb|EEH48633.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 271

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLV-LHRYGISMRGFEDIMLM 492
             L+   E+    K+  +++ D       + I ++G EDI LM
Sbjct: 82  KSLRTILESPDVPKVFFDVRNDSNAFFFHFDIRLQGVEDIQLM 124


>gi|225683831|gb|EEH22115.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 269

 Score = 39.6 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLV-LHRYGISMRGFEDIMLM 492
             L+   E+    K+  +++ D       + I ++G EDI LM
Sbjct: 80  KSLRTILESPDVPKVFFDVRNDSNAFFFHFDIRLQGVEDIQLM 122


>gi|194468559|ref|ZP_03074543.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358811|ref|ZP_02659348.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194454923|gb|EDX43762.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331760|gb|EDZ18524.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 375

 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +               
Sbjct: 2   NYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANV--------A 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G     
Sbjct: 54  LIDPLGISDW--------------SPLKAVLRDTEITKFLHAGSEDLEVFLNAFGELPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A++ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--LSWGFAAMVEEYTGVA---LDKSESRTDWLARPLSERQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVWYLLPIAKKL 166


>gi|84624243|ref|YP_451615.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576150|ref|YP_001913079.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84368183|dbj|BAE69341.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520602|gb|ACD58547.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 363

 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 64/179 (35%), Gaps = 11/179 (6%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           ++P  I + T   ++ T +    +   + +   ++    + L   + + LK++      +
Sbjct: 18  ARPARIGLDTEFIRERTYWPQLAL---VQMAIGEEILLIDPLIPGMNAALKEWLTATDIV 74

Query: 464 KIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522
           K+ H+   D +      G+  R   D  + +       +        QK +      +L 
Sbjct: 75  KVMHSASEDLVTFKCACGVLPRPLFDTQIAA-----ALAGVGGGMGYQKLVQEVTGTLLT 129

Query: 523 SRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDV 579
             +  S  + +       E+A ++   +  +   L  +L    +L  + E  ++ +  V
Sbjct: 130 KGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWLAEDAERLLATV 188


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score = 39.3 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           LE      F + T  + A +   I + A+     +    F+        LS         
Sbjct: 413 LEDETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDI 489
           + D         E+    + +  +     + HN  +D   L     + G+        D 
Sbjct: 473 TDDMLTDAPEVGEVFKKFEAWMGDHTL--VAHNASFDMGFLNVGFKKCGLDKPKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|188533676|ref|YP_001907473.1| ribonuclease D [Erwinia tasmaniensis Et1/99]
 gi|188028718|emb|CAO96580.1| Ribonuclease D [Erwinia tasmaniensis Et1/99]
          Length = 373

 Score = 39.3 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 64/203 (31%), Gaps = 29/203 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +YT I     + +  Q+   + + +          ++ +   I +   +          T
Sbjct: 2   NYTMITTNAALSEACQRARQVPALALDTEFVRTRTYYPRLGLIQLYDGETISLIDPLPIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRG 485
            +   S                      +  +++  +K  H    D  V  H +G+  + 
Sbjct: 62  DWTPFS----------------------ELLQDQKVIKYLHAGSEDLEVFCHEFGVLPQP 99

Query: 486 FEDIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SGR  S   A++ + +       + KS   +  + +    +  ++A  
Sbjct: 100 MIDTQILA--AFSGRPLSCGFATVVESFTGIA---LDKSESRTDWLARPLSEKQCQYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEKLLH 567
           +   +L +   L  +      + 
Sbjct: 155 DVFYLLPIAGKLVAEAESAGQMA 177


>gi|75675781|ref|YP_318202.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
 gi|74420651|gb|ABA04850.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
          Length = 382

 Score = 39.3 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 12/153 (7%)

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS---YLKKFFE---NEHFLKIGHNIKYD 472
           DT F  ET +  L +   Q ++    +  + L+    LK FF    NE  LK+ H  + D
Sbjct: 26  DTEFLRETTYYPL-LCVIQLASPDEAVVVDALAGGIDLKPFFALMSNESVLKVFHAARQD 84

Query: 473 K-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
             ++ H+ G+      D  + + VL  G S     ++ ++   +      K+ + +    
Sbjct: 85  IEIIWHQAGLIPHPVFDTQVAAMVLGHGDSI-AYDALVERITGHRPD---KTHRFTDWSR 140

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +   ++  E+A+ +   +  ++  L   L    
Sbjct: 141 RPLTAEQLEYAVADVTHLRDVFAALDADLSKRG 173


>gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
 gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
          Length = 230

 Score = 39.3 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 20/138 (14%)

Query: 392 FKIITDTMDAFHSK-PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               T  +D       + +    +  +  T  +    +I+      Q++   + L+ E L
Sbjct: 6   LDTETTGLDPVRGDRLVELGCVEIFNRMPTG-QTFHCYINPERDMPQEAFAVHGLSSEFL 64

Query: 451 SYLKKFFE---NEHFLKIG------HNIKYDKLV-------LHRYGISMRGFEDIMLMSY 494
           +  K  F    +E    IG      HN  +D          L R  I      D +L++ 
Sbjct: 65  AD-KPLFAQVVDEFLEFIGDAPLIIHNASFDISFINAELERLKRQVIGRERLVDTLLIAR 123

Query: 495 VLDSGRSSHDIASIAQKW 512
               G S+  +  +  ++
Sbjct: 124 RKHPGVSNR-LDDLCSRY 140


>gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1]
          Length = 235

 Score = 39.3 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 36/178 (20%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I I    +  +  T  +         V    +    + LT E L 
Sbjct: 6   FDTETTGLDKDSDRIIEIGCVEMVDRYLTKRQFHVYLNPQGVIIPDEVVAIHGLTNERLK 65

Query: 452 YLKKFFEN---------EHFLKIGHNIKYDKLVL-HRYG------ISMRGFEDIMLMSY- 494
             KK FE+         +    + HN  +D   L    G      IS+    D + ++  
Sbjct: 66  NEKK-FEDIADEFLEFIDGATMVAHNASFDISFLNAELGRINKPLISVDNVIDTLAIARQ 124

Query: 495 ----------VL-------DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535
                     VL       +S R  H  A +  + L+    E++  ++  +  D  SD
Sbjct: 125 KFPMGPNSLDVLCKRFGIDNSNRVLHG-ALLDAEILADVYIELIGGKQGVLSFDNNSD 181


>gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
 gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
          Length = 896

 Score = 39.3 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 32/162 (19%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID------- 430
            +++Q     G   F   T  +D F    I IA   +   +     ++            
Sbjct: 503 AEFLQAYNEAGIVVFDTETTGLDVFSDDIIEIAAIRIKGGEIIGDPLDLYIETDKPILPK 562

Query: 431 --------LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR---- 478
                    S++ ++ +  +     + L     +        +GHN  YD  ++      
Sbjct: 563 LGDKENPMYSIYHAKMAADRLLAPADALQRFLAYI--GTRPVLGHNASYDYNIIDNCLKR 620

Query: 479 --------YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
                   +G       D + +  +L  G  S+ + S+ + +
Sbjct: 621 YCNDTMQTHG---NRCFDSLKLIRLLAPGLHSYKLESLLETF 659


>gi|296101862|ref|YP_003612008.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056321|gb|ADF61059.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 384

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/201 (9%), Positives = 56/201 (27%), Gaps = 27/201 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I    ++    +      + +          ++ +   I +              T
Sbjct: 11  NYQMITTNDELASLCEVTRDFPAIALDTEFVRTRTYYPQLGLIQMYDGKHVSLIDPLGIT 70

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +  +                      +    +    K  H    D  V    +GI  + 
Sbjct: 71  DWTPM----------------------RDLLLDTAVTKYLHAGSEDLEVFLNTFGIMPQP 108

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +++   +    S   A++ +++   T   + KS   +  + +    +  ++A  +
Sbjct: 109 LIDTQILAAFSN-RPLSWGFAAMVEEYTGLT---LDKSESRTDWLARPLTERQLDYAAAD 164

Query: 546 SNVILQLWLLLRPKLIVEKLL 566
              +L +   L  +      L
Sbjct: 165 VFYLLPIAGQLMKEAEASGWL 185


>gi|294635861|ref|ZP_06714315.1| ribonuclease D [Edwardsiella tarda ATCC 23685]
 gi|291090794|gb|EFE23355.1| ribonuclease D [Edwardsiella tarda ATCC 23685]
          Length = 376

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 59/202 (29%), Gaps = 29/202 (14%)

Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421
            I    Y  I +   +Q   ++       +          ++ +   + +   +      
Sbjct: 2   EIIMLKYQLITSNSALQDVCERASAFPYVALDTEFVRTRTYYPQLGLVQLYDGETLS--- 58

Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYG 480
                +   L +   Q                     N   +K+ H    D ++ LH + 
Sbjct: 59  -----LIDPLPISDWQP--------------FVDLLRNPQVVKLLHAGSEDLEVFLHDFQ 99

Query: 481 ISMRGFEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
              +   D   L ++      S    A++   +L     E+ KS   +  + +    +  
Sbjct: 100 TLPQPLIDTQILAAFTGRPLSS--GFAAMVNAYLGV---ELDKSESRTDWLARPLSERQC 154

Query: 540 EHAIENSNVILQLWLLLRPKLI 561
           ++A  +   +L +   L  ++ 
Sbjct: 155 DYAAADVYYLLPMAHQLLAEVE 176


>gi|218439906|ref|YP_002378235.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218172634|gb|ACK71367.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 308

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 106/331 (32%), Gaps = 73/331 (22%)

Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH 434
           +DIQ  +  L  +        +  +++  S+   I               + +      +
Sbjct: 8   EDIQALIDDLTEVKILWLDTESTDLNSKKSRLSLI---------------QVLAYPEDTN 52

Query: 435 TSQDSTGKNTLTKEILSYL-KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMS 493
            S+          +I+ Y  +K   N+   KI HN ++D   L   G   +     + +S
Sbjct: 53  GSRTYIFDVLDNPDIVDYFIEKIMVNDQINKIFHNAQHDLQFLG--GKKAKNVTCTLKLS 110

Query: 494 ----YVLDSGRSSHDIASIAQKWLSYTR--KEILKSRKSSIPIDKISDSQVQEHAIENSN 547
               Y +    + H + ++ +    +    KE   S  S  P+ +      +   +  ++
Sbjct: 111 KTIPYHILPVPN-HTLKTLTEYLTDFKNVSKEEQTSDWSQRPLSQKQLDYAKMDPVYLAH 169

Query: 548 V-----------------------------ILQLWLLLRPKLI-----VEKLLHVYERLD 573
           +                             I   W LL+ ++       +  +    + +
Sbjct: 170 IHGRLLELNQQSNPDPNQDNLTEIGKRYQEIKPEWQLLKSEIDNLETRAKNAMKAQNQTE 229

Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633
                 +S  + T I++D   L Q+      +L              F+++  K L   L
Sbjct: 230 -NFAFTLSSYDRTTIKVDFAELAQIVINQGIDLH-------------FSITLDKNLQKQL 275

Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
              L   S  K     W+ T++DLE+ +  +
Sbjct: 276 GELLNQLSLKKETIQSWRLTSKDLEEDSEEE 306


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 70/201 (34%), Gaps = 36/201 (17%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI-----DLSVHTSQ 437
           +++     SF I T  +    +  + I   +L    +  +  +T F       +   T  
Sbjct: 420 EIKGQEYVSFDIETTGLCPRFA--VIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTEN 477

Query: 438 DSTGKNTLTK----EILSYLKKFFENEHFLK-IGHNIKYDKLVL----HRYGISMRGFE- 487
            +   N + +    E+   L+K + + +    + HN ++D   L     +  I       
Sbjct: 478 LTGITNAMIEKSGLELKEALQKIYNDLNGKIALAHNARFDFNFLKEKFRQAKIEFPNVTV 537

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D +++S ++      H +  +A +                  +    D  V      ++
Sbjct: 538 IDTLIVSRIVFPQNKKHKLEDVATR------------------VGVEYDPTVAHRGDYDA 579

Query: 547 NVILQLWLLLRPKLIVEKLLH 567
            V+ ++W+ L  +L  + +L 
Sbjct: 580 KVLAEVWVALMDELGKKGILT 600


>gi|284046840|ref|YP_003397180.1| ribonuclease D [Conexibacter woesei DSM 14684]
 gi|283951061|gb|ADB53805.1| Ribonuclease D [Conexibacter woesei DSM 14684]
          Length = 396

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 64/214 (29%), Gaps = 28/214 (13%)

Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422
           + + S   +    +I +  +     G         +   + +    + ++  D       
Sbjct: 1   MPHASVPTLSGDDEIARVAELARAAGRLGIDTEFMSEGRYRALLCLVQVAVDDADAPNGV 60

Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GI 481
           ++  +F                  K   + L     +     + H  + D  ++ R    
Sbjct: 61  RI-ALFDPF--------------DKLDFAPLAAVLADPEIEIVLHAARQDVAIMRRAWRT 105

Query: 482 SMRGFEDIMLMS----YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            +R   D  + +    Y   +G  +   A++ Q+        + K+   +    +    +
Sbjct: 106 DVREVFDTQVAAGFAGYGAQTGYGNLLGAALGQR--------VGKTASYTRWDARPLTEE 157

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
              +A E+   +LQL   L  KL     L   + 
Sbjct: 158 QLSYAAEDVLHLLQLSDALHDKLSAHGRLQWAQE 191


>gi|257068547|ref|YP_003154802.1| ribonuclease D [Brachybacterium faecium DSM 4810]
 gi|256559365|gb|ACU85212.1| ribonuclease D [Brachybacterium faecium DSM 4810]
          Length = 399

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
           + L+          + H    D   L   G+   G  D  L + +L  G     + ++ +
Sbjct: 82  ATLRSLLA--EREWVLHAAGQDLPSLAEIGLEPGGLFDTELAARLL--GMERVGLGAVVE 137

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             L      + K   ++    +        +A  +  V++++  +LR +L  
Sbjct: 138 DTLGLR---LAKEHSAADWSRRPLPEGWLTYAALDVEVLVEVRDVLRERLRE 186


>gi|121711303|ref|XP_001273267.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus clavatus
           NRRL 1]
 gi|119401418|gb|EAW11841.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus clavatus
           NRRL 1]
          Length = 391

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 96/313 (30%), Gaps = 35/313 (11%)

Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT-S 339
           ++ L   V  + D D  ++          +    + + E   D  + + +   ++ Q  +
Sbjct: 37  YSSLPAAVRASDDGDGLDLATQNQSCTKGKEISQSTKPEDQIDIRLPSDEKDLVAQQAQA 96

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399
           K +S   P  L     +        +       + +  ++  +         F +     
Sbjct: 97  KPDSATVPAVLKYWSHRLHKTPSGKDIIVHYCKSLEKSEEVAKYFLNDKVIGFDMEWKPQ 156

Query: 400 DAFHSKPIA-IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458
               +   + +++  +   +  +     +F                    + + L+K  E
Sbjct: 157 ATKSAGIRSNVSLIQIANSERIALFQIALFKP-----------AKKAEDFVAASLRKILE 205

Query: 459 NEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVL--------DS---GRSSHDIA 506
           +   +K+G  IK D   L +Y GI  RG    + +S++         +     +    ++
Sbjct: 206 SPEIMKVGVTIKADCTRLRKYLGIDTRG---TLELSHLYKLVKYSESNPKLINKRPVSLS 262

Query: 507 SIAQKWLSYTRKEILKSR----KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
              ++      ++    R     +++   ++  +    +A      +       R  L  
Sbjct: 263 DQVEEHFGMPLEKDGNVRCSNWATALNYRQVQYAATDPYACFR---LFDTMNTKRKALDP 319

Query: 563 EKLLHVYERLDKP 575
              L  Y  LD P
Sbjct: 320 MPPLPEYAELDLP 332


>gi|288802306|ref|ZP_06407746.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18]
 gi|288335273|gb|EFC73708.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18]
          Length = 224

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 73/190 (38%), Gaps = 28/190 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTM-DAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           ++N  + ++ V  L +         T  +      + +A+ +   D++    F++  I +
Sbjct: 29  VLNEAEAEKAVNYLLSKDIIGIDTETRPVFKKGQRRKVAL-LQACDREVCFLFRLNLIGV 87

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFED 488
                                  +K+F E+    K+G ++  D L+LH R       F D
Sbjct: 88  P--------------------DCIKRFLEDTTVPKVGLSLGDDMLMLHQRLDFKPGYFID 127

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             L  YV        D+ S+ + + +  ++ I K  + S   ++I   + + +A  ++  
Sbjct: 128 --LQDYV--KSLGIEDM-SLQKLYANVFQERITKREQLSNWENEILSDKQKIYASTDAWT 182

Query: 549 ILQLWLLLRP 558
            ++L+  L  
Sbjct: 183 CIKLYERLHE 192


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 70/201 (34%), Gaps = 36/201 (17%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI-----DLSVHTSQ 437
           +++     SF I T  +    +  + I   +L    +  +  +T F       +   T  
Sbjct: 426 EIKGQEYVSFDIETTGLCPRFA--VIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTEN 483

Query: 438 DSTGKNTLTK----EILSYLKKFFENEHFLK-IGHNIKYDKLVL----HRYGISMRGFE- 487
            +   N + +    E+   L+K + + +    + HN ++D   L     +  I       
Sbjct: 484 LTGITNAMIEKSGLELKEALQKIYNDLNGKIALAHNARFDFNFLKEKFRQAKIEFPNVTV 543

Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D +++S ++      H +  +A +                  +    D  V      ++
Sbjct: 544 IDTLIVSRIVFPQNKKHKLEDVATR------------------VGVEYDPTVAHRGDYDA 585

Query: 547 NVILQLWLLLRPKLIVEKLLH 567
            V+ ++W+ L  +L  + +L 
Sbjct: 586 KVLAEVWVALMDELGKKGILT 606


>gi|218515424|ref|ZP_03512264.1| ribonuclease III protein [Rhizobium etli 8C-3]
          Length = 177

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 65/195 (33%), Gaps = 26/195 (13%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T D+    ++L      +          F  +   I ++        S  +E +   
Sbjct: 2   IETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMA--------SPTLEVLVDP 53

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDI 489
           L+                 L+   +   +   LK+ H  + D  ++   G +      D 
Sbjct: 54  LAKGID-------------LAPFFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDT 100

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + + V   G S      +  +  +    +   SR +      +SD Q+ E+A+ +   +
Sbjct: 101 QVAAMVCGFGDSV-SYDQLVSRIKNVHIDKS--SRFTDWSRRPLSDKQL-EYALADVTHL 156

Query: 550 LQLWLLLRPKLIVEK 564
             ++L L+ +L  E 
Sbjct: 157 RDVYLSLKAELDREG 171


>gi|319405613|emb|CBI79236.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 383

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 77/212 (36%), Gaps = 33/212 (15%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I NT D++  +  L      +          F  +   I +++ D        V  +  
Sbjct: 3   LITNTIDLEIAIAALRKSNFVTVDTEFIRETTFWPQLCLIQVASSD--------VTILID 54

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFE---NEHFLKIGHNIKYDKLVLHRYG-ISMRG 485
            ++   +                L+ FF+   ++  +K+ H  + D  +++  G +    
Sbjct: 55  PMAQDIN----------------LQPFFDLMIDKKIVKVFHAARQDIEIIYHLGGVIPSP 98

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +   +   G S      I Q+   +   +   SR +      +S+ Q+  +A+ +
Sbjct: 99  LFDTQVAGSICGFGDSI-SYDQIVQRCTGHHLDKS--SRFTDWSCRPLSEKQLL-YALAD 154

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
              + +++L+L+ +L  +K  H     +  ++
Sbjct: 155 VTYLREVYLVLKKQLEEKKRTHWMND-EMAIL 185


>gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 234

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 34/172 (19%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL- 450
           F   T  ++    + I I    L  +  T                 D+   + ++ E L 
Sbjct: 6   FDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQLL 65

Query: 451 ------SYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSYVL 496
                   L +F E  +    + HN  +D       L R     I+     D + ++   
Sbjct: 66  DKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRK 125

Query: 497 DSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPI 530
                 + + ++ +++                  L+    E++  +++++ +
Sbjct: 126 HP-MGPNSLDALCKRYGIENSHRTLHGALLDAQILAEVYIELIGGKQTALGL 176


>gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1489

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI--DLSVHTSQDSTGKNTLTK 447
             F I T    +   + I I    ++  + T      +     +     Q ++  +++  
Sbjct: 463 VVFDIETTGFSSLTCQIIEIGAVLVENGEITDRFSTFVNPKVPIPFRIEQLTSINDSMVM 522

Query: 448 E---ILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RYGISMR-GFEDIMLMSYVLDS 498
           +   I   L KF E ++  + + HN  +D   +     R GI+    + D + M+  L  
Sbjct: 523 DAPTIEEVLPKFLEFSKDAVMVAHNADFDMGFIMKNCDRLGIAHDFTYVDTVGMARFLLP 582

Query: 499 GRSSHDIASIAQ 510
             +   + ++A+
Sbjct: 583 ALNRFKLDTVAK 594


>gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99]
 gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330]
 gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1
           str. 9-941]
 gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA
           polymerase 3, epsilon subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840]
 gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365]
 gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445]
 gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99]
 gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
          Length = 234

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 34/172 (19%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL- 450
           F   T  ++    + I I    L  +  T                 D+   + ++ E L 
Sbjct: 6   FDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQLL 65

Query: 451 ------SYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSYVL 496
                   L +F E  +    + HN  +D       L R     I+     D + ++   
Sbjct: 66  DKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRK 125

Query: 497 DSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPI 530
                 + + ++ +++                  L+    E++  +++++ +
Sbjct: 126 HP-MGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIGGKQTALGL 176


>gi|238794476|ref|ZP_04638085.1| Ribonuclease D [Yersinia intermedia ATCC 29909]
 gi|238726159|gb|EEQ17704.1| Ribonuclease D [Yersinia intermedia ATCC 29909]
          Length = 373

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +QQ  ++  T    +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITTNSALQQVCEQARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +   S                      +  ++ + +K  H    D  V    +      
Sbjct: 62  EWQPFS----------------------ELLQDLNVVKYLHAGSEDLEVFLNAFSRMPTP 99

Query: 486 FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SGR+ S   A +  ++      E+ KS   +  I +    +  ++A  
Sbjct: 100 MIDTQILA--AFSGRTLSCGFAMLVNEFEGV---ELDKSESRTDWIARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L L   L
Sbjct: 155 DVFYLLPLAAKL 166


>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
 gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
          Length = 1463

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 67/222 (30%), Gaps = 28/222 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           LE      F + T  + A +   I + A+     +    F+        LS         
Sbjct: 417 LEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIERFERFANPHRPLSATIIELTGI 476

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-------LHRYGISMRGFED 488
           + D        +E++   K++  +     + HN  +D          L           D
Sbjct: 477 TDDMLKDAPEVEEVIRDFKEWVGDHTL--VAHNASFDIGFINVAYKRLLNSEKVQNPVID 534

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            + +   L     +H + ++ +K+      E+ +          I D++   + +     
Sbjct: 535 TLELGRFLYPEFKNHRLNTLCKKF----DIELTQ------HHRAIYDTEATGYLLVKMLK 584

Query: 549 ILQLWLLLR-PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
                 +L   +L          +  +P    +  +  TG++
Sbjct: 585 DAAEKNILYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLK 626


>gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL S4-378]
          Length = 931

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 56/151 (37%), Gaps = 14/151 (9%)

Query: 381 VQKLETIGSASFKIITDTMDA-FHSKPIAIAISTLDQKD----DTSFKVETIFIDLSVHT 435
           +++++        + T    A    + I  A   ++        ++F      I   +  
Sbjct: 1   MEQMKKKRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYSTFLNPEKPIPAFIQE 60

Query: 436 SQDSTGKNTLTKEILSYLKKFFEN--EHFLKIGHNIKYDKLVLH----RYGISMRGFE-- 487
               + K+     +   +     +  E  + + HN+ +D   L     R GIS+   +  
Sbjct: 61  LTGISPKDVKNAPLFEDVAPIIASLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKL 120

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW-LSYTR 517
           D + ++ ++  G  S+ +  ++ ++ L + +
Sbjct: 121 DTVELARIMYPGIDSYKLQDLSDEFGLGHDK 151


>gi|325928069|ref|ZP_08189282.1| ribonuclease D [Xanthomonas perforans 91-118]
 gi|325541567|gb|EGD13096.1| ribonuclease D [Xanthomonas perforans 91-118]
          Length = 363

 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 8/132 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
           + LK++      +K+ H+   D +      G   R   D  + +       +        
Sbjct: 62  AALKEWLTATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAA-----ALAGVGGGMGY 116

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEK-LLH 567
           QK +      +L   ++     +   S  Q E+A ++   +  +   L  +L  +  L  
Sbjct: 117 QKLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEW 176

Query: 568 VYERLDKPMIDV 579
           + E  ++ +  V
Sbjct: 177 LAEDAERLLATV 188


>gi|224824622|ref|ZP_03697729.1| 3'-5' exonuclease [Lutiella nitroferrum 2002]
 gi|224603115|gb|EEG09291.1| 3'-5' exonuclease [Lutiella nitroferrum 2002]
          Length = 222

 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 26/205 (12%)

Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417
            S   +   + + + N  +++    +L       F     +   FH        S+    
Sbjct: 38  PSYPGLAPTAVSVVANETEMEAAYHQLSVCRVLGFDTE--SRPTFHKGET----SSGPHL 91

Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL- 476
              +         +                  L+ L+   E+    K+G  +  D   L 
Sbjct: 92  VQLATATHAYLFPVERLAD-------------LTRLRMILESPAIRKVGFELGSDVQRLR 138

Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSS--HDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
            + GI      D  +       G       + ++A+ +    RK   K + +S     + 
Sbjct: 139 AKLGIECAALVD--IGRLFRQPGEHRTVGAVQAVARLFGQCFRKS--KRQSTSNWASPVL 194

Query: 535 DSQVQEHAIENSNVILQLWLLLRPK 559
                 +A  ++ V LQ++  L  +
Sbjct: 195 SEAQCVYAGNDAYVALQVYHELERQ 219


>gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
 gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
          Length = 229

 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 42/145 (28%), Gaps = 31/145 (21%)

Query: 392 FKIITDTMDA--------------FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
               T  +D                +              +            +S    +
Sbjct: 9   LDTETTGLDPRQGHRIVEIAAIEMMNKVLTGRNFHFYINPERDIPFDAYRIHGISGEFLK 68

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL-------VLHRYGI---SMRGFE 487
           D    +T+  + L ++           + HN  +D         +L R  I    +    
Sbjct: 69  DKPLFHTIADDFLEFI------ADSKLVIHNAPFDIKFLNHELSLLKRAEIKLLELSNAI 122

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D ++M+  +  G S +++ ++ +++
Sbjct: 123 DTLVMARSMFPG-SKYNLDALCKRF 146


>gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
 gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
          Length = 1465

 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVH 434
           L       F + T  + A ++  I IA S           D+  D    +     +L+  
Sbjct: 422 LHESTYVVFDVETTGLSAMNNDLIQIAASKMYKGNILEQFDEFIDPGHPLSAFTTELTGI 481

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFED 488
           T     G   L + +L   + F ++   + + HN  +D   +     R  +    +   D
Sbjct: 482 TDNHLVGAKPLHQ-VLVEFQAFCKD--TVLVAHNASFDVGFMNANYARENLPKITQPVID 538

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L      H +  + +++
Sbjct: 539 TLEFARNLYPEYKRHGLGPLTKRF 562


>gi|301620462|ref|XP_002939597.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing
           protein 1-like [Xenopus (Silurana) tropicalis]
          Length = 490

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSS----HDIAS 507
           L+   E+   LK+ H+ ++   +L ++YGI +    D  +    L S  +     H I +
Sbjct: 205 LQMVLEDTGILKVIHDCRWLGDILSYQYGIILNNVFDTQVGDVYLFSMETGGFLPHRIRT 264

Query: 508 IAQKWLSY 515
           + +  + +
Sbjct: 265 LEECLIHH 272


>gi|213964497|ref|ZP_03392697.1| ribonuclease D [Corynebacterium amycolatum SK46]
 gi|213952690|gb|EEB64072.1| ribonuclease D [Corynebacterium amycolatum SK46]
          Length = 433

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
           +   I H    D   L   G+      D  L   +L  G    ++A++ ++ L      +
Sbjct: 94  NLTWIIHAAHSDLPCLAALGLYPTKVIDTELAGRLL--GLERVNLAALTERLLGVG---L 148

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMI 577
            K         +   +   ++A  +  ++++L  +L   L  +++L  + +  ++ + 
Sbjct: 149 AKGHGREDWSTRPLPADWLDYAALDVELLIELAEVLCQALTELDRLEWLEQECERELA 206


>gi|47934620|gb|AAT39748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 124

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 20/122 (16%)

Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIY------------DLSGEK-------FNLS 624
           E  G ++D +    + A ++  + S+E+ +             + +G++       FNL+
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSEKTGKQLKDKVTIFNLA 60

Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684
           S KQ+ + L   L +     T+ GQ       LE I+     +I   L   +  +     
Sbjct: 61  SRKQIAERL-QGLGWTPTKHTEKGQPIVDEGTLEDIDIPQAQLIAEYLMXAETCRYDRRM 119

Query: 685 AD 686
           A 
Sbjct: 120 AQ 121


>gi|325914723|ref|ZP_08177061.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937]
 gi|325539000|gb|EGD10658.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937]
          Length = 364

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             LK++      +K+ H+   D +      G+  R   D  + +       +        
Sbjct: 62  EALKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAA-----ALAGVGGGMGY 116

Query: 510 QKWLSYTRKEILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLH 567
           QK +      +L   +  S  + +   +   E+A ++   +  +   L  +L  +++L  
Sbjct: 117 QKLVQEVTGTLLTKGETRSDWMRRPLSASQLEYAADDVRYLFAIHDELSRRLTELDRLGW 176

Query: 568 VYERLDKPMIDV 579
           + E  ++ +  V
Sbjct: 177 LAEDAERLLATV 188


>gi|302837201|ref|XP_002950160.1| 3'-5' exonuclease [Volvox carteri f. nagariensis]
 gi|300264633|gb|EFJ48828.1| 3'-5' exonuclease [Volvox carteri f. nagariensis]
          Length = 313

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIML 491
           L  LK+  E     K+ ++++ D   L H++G+S+RG  D+ L
Sbjct: 129 LRCLKEVLECPSVTKLFYDVRCDAEALYHQHGVSLRGVVDLQL 171


>gi|228982472|ref|ZP_04142731.1| metallophosphoesterase [Bacillus thuringiensis Bt407]
 gi|228776655|gb|EEM24963.1| metallophosphoesterase [Bacillus thuringiensis Bt407]
          Length = 802

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267
           +++ G +EN+     +IK+  ++ N     E  +L R L  +  D   +  +   ++   
Sbjct: 604 IKDLGQVENLYSEIYQIKEMVQKRN-----EIQKLYRSLTTIIADGKESKHVSEQLMNLP 658

Query: 268 NGPRLISFLKALEFTK-----LINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID- 321
           N   L+  +K L  +K     L+ +     +     ++ + +     E     +E E   
Sbjct: 659 NAQLLLDEIKELAKSKSVQEELLTQSTKLTETKNRLVKEIDVSSEVIEKTNSLVEAESTL 718

Query: 322 ---RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
              ++   K     SL+++ S IN E+  QK  +E +   ++  +N+  Y  ++  
Sbjct: 719 SELKELMAKKDTVQSLTNRLSSINEEEKQQKQKIEHVISKNEKLVND--YKILLTE 772


>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
           14580]
 gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
          Length = 1438

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 67/222 (30%), Gaps = 28/222 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           LE      F + T  + A +   I + A+     +    F+        LS         
Sbjct: 417 LEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIERFERFANPHRPLSATIIELTGI 476

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV-------LHRYGISMRGFED 488
           + D        +E++   K++  +     + HN  +D          L           D
Sbjct: 477 TDDMLKDAPEVEEVIRDFKEWVGDHTL--VAHNASFDIGFINVAYKRLLNSEKVQNPVID 534

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            + +   L     +H + ++ +K+      E+ +          I D++   + +     
Sbjct: 535 TLELGRFLYPEFKNHRLNTLCKKF----DIELTQ------HHRAIYDTEATGYLLVKMLK 584

Query: 549 ILQLWLLLR-PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589
                 +L   +L          +  +P    +  +  TG++
Sbjct: 585 DAAEKNILYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLK 626


>gi|24372736|ref|NP_716778.1| exonuclease, putative [Shewanella oneidensis MR-1]
 gi|24346805|gb|AAN54223.1|AE015559_7 exonuclease, putative [Shewanella oneidensis MR-1]
          Length = 261

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 28/184 (15%)

Query: 381 VQKLETIGSASFKIITD-TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS 439
           +Q+L       F   T  + +     P  +++  L   D                     
Sbjct: 72  LQQLSRESVLGFDTETRASFEPSVQHP--LSLVQLATADTCY------------------ 111

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDS 498
             +  +  +  + LK   ENE  LK+G  ++ D   L R + I +    D+      L +
Sbjct: 112 LFQQAVLGDAFAQLKPLLENEQILKVGIGLRGDGQALKRDWNILVSPRLDLNWAMAQLGA 171

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIP-IDKISDSQVQ-EHAIENSNVILQLWLLL 556
           G+       +A   L + R  I K +K ++    ++  S  Q ++A  ++      +  L
Sbjct: 172 GKEMGTRQLVAV--LLHQR--IDKPKKITLSNWQQVPLSPAQIQYAALDALAANHCFWQL 227

Query: 557 RPKL 560
             KL
Sbjct: 228 IEKL 231


>gi|293395838|ref|ZP_06640120.1| ribonuclease D [Serratia odorifera DSM 4582]
 gi|291421775|gb|EFE95022.1| ribonuclease D [Serratia odorifera DSM 4582]
          Length = 373

 Score = 39.3 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 54/192 (28%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +YT I     +QQ  ++       +          ++ +   I +   +Q          
Sbjct: 2   NYTLITTDAGLQQVCEQARKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLS-------- 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +   Q                     +   +K  H    D  V    +      
Sbjct: 54  LIDPLPIKQWQP--------------FVDLLADSAVVKFLHAGSEDLEVFLNAFNTLPTP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A++  +++     E+ KS   +  + +    +   +A  
Sbjct: 100 LVDTQILAAFTGKP--LSCGFATLVAQYMQV---ELDKSESRTDWLARPLTERQCVYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVFYLLPMARQL 166


>gi|71908088|ref|YP_285675.1| 3'-5' exonuclease [Dechloromonas aromatica RCB]
 gi|71847709|gb|AAZ47205.1| 3'-5' exonuclease [Dechloromonas aromatica RCB]
          Length = 217

 Score = 39.3 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             L++       LK+G  +  D+ VL  R GI +    D  L   +   G      A +A
Sbjct: 91  EVLRRILSAADILKVGLGLGNDRSVLRSRLGIELNNVLD--LGEAMRGPGHRGTVGAKVA 148

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
                  + +  K   +S   +   + +   +A  +++V LQL+  
Sbjct: 149 VAHYFGQKFQKSKKVGTSNWANPRLNERQLLYAANDAHVALQLYHA 194


>gi|226306331|ref|YP_002766291.1| ribonuclease D [Rhodococcus erythropolis PR4]
 gi|226185448|dbj|BAH33552.1| putative ribonuclease D [Rhodococcus erythropolis PR4]
          Length = 429

 Score = 39.3 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 451 SYLKKFFENEH-FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             L+   E  +    + H+   D   L   G++     D  L   +  +G     +A+I 
Sbjct: 87  QDLQPLAEAINPLQWVLHSADQDLPGLAELGLTPAELFDTELAGRL--AGFERVGLAAIV 144

Query: 510 QKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568
           ++ L   R E+ K    +      + D+ +  +A  +  V+L+L   +  +L  +  L  
Sbjct: 145 ERTL---RVELRKGHGAADWSTRPLPDAWL-NYAALDVEVLLELRDAMEAELESQGKLEW 200

Query: 569 YER 571
            + 
Sbjct: 201 AKE 203


>gi|170095531|ref|XP_001878986.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646290|gb|EDR10536.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 250

 Score = 39.3 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 51/123 (41%), Gaps = 18/123 (14%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLM-----SYVLDSGRSSHDIA 506
           L+   E+    K+ ++++ D   L+  YG+++ G  D+ L+       +    R  + ++
Sbjct: 86  LRMILEDTGIKKVFYDVRNDADALYNLYGVNLMGVYDLQLLELAVRHSLRRQTRLLNGLS 145

Query: 507 SIAQKWLSYTRK-EILK-----------SRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
              + +L+   + E +K               S+  ++  D ++  +  ++  ++  L  
Sbjct: 146 KSIKSYLTPPVEWEPVKEAGSRLFKPEFGGSYSVFEERPLDPRIVAYCAQDVTLLFALEE 205

Query: 555 LLR 557
            LR
Sbjct: 206 TLR 208


>gi|306835906|ref|ZP_07468899.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49726]
 gi|304568180|gb|EFM43752.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49726]
          Length = 233

 Score = 39.3 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 58/149 (38%), Gaps = 17/149 (11%)

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--------DTSFKVETIFIDL 431
           W    +     +F + T + +   ++ +  A+  +D +D        D   ++     D+
Sbjct: 9   WTMNFDASRMLAFDLETTSANPKDARIVTSALVRIDGRDVQKVEHLADPGIEIPQAATDV 68

Query: 432 SVHTSQDSTGKNTLTKEIL----SYLKKFFENEHFLKIGHNIKYDKLVLHRY--GISMRG 485
              T++ +  +    +E+L      +K  +E+   L I +N  +D  VL       ++ G
Sbjct: 69  HGITTEKAQAEGRPHEEVLKDTVDAIKSAWEDGLTL-IVYNAAFDLTVLRSLTGDFTVTG 127

Query: 486 -FEDIMLMSYVLDS-GRSSHDIASIAQKW 512
              D  ++  V D   +    + ++ + +
Sbjct: 128 PVFDPYVIDRVSDKWRKGKRTLGAVCEHY 156


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom
           phytoplasma]
          Length = 1492

 Score = 39.3 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 66/205 (32%), Gaps = 35/205 (17%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH--------- 434
           L+        I T        + I+IA   +       +  E I     +          
Sbjct: 400 LKNHNYVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDELINPGKDIKISNLIQRLT 459

Query: 435 -TSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVL----HRYG--ISMRGF 486
             S +        KEILS    F  +  + + + HN  +D   L       G    +   
Sbjct: 460 NISDEILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLPV 519

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-LKSRKSSIPIDKISDSQVQEHAIEN 545
            D +                ++AQK+ +   K   L+    S  I K+       +A+ +
Sbjct: 520 IDTL----------------TLAQKYFNKILKYFSLEKIVKSFKI-KLDSEGQYHNALFD 562

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYE 570
           +     ++L +  +L  +K+ + Y+
Sbjct: 563 ARATALIFLEMLEQLEAQKIFNFYD 587


>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
          Length = 388

 Score = 39.3 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 453 LKKFFE---NEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           L   FE   N + +K+ H  + D  +++  G +      D  + + V   G S      +
Sbjct: 60  LTPMFELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSI-SYDQL 118

Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLH 567
            QK       +I KS + +    +    +  ++A+ +   +  ++L L+ +L  E   L 
Sbjct: 119 VQK---IKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLW 175

Query: 568 VYERLDKPMIDVVSQME 584
           + E ++         M 
Sbjct: 176 LTEEMNILESRDTYDMH 192


>gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein
 gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003]
 gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 39.3 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 32/198 (16%)

Query: 384 LETIGSASFKIITDTMDA-FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           L+ +    F   T  +      + + IA   +      + +V    ++        ST  
Sbjct: 505 LDKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAV 564

Query: 443 NTLTKEILSYLKKFFE--------NEHFLKIGHNIKYDKLVLHRYGISM-----RGFEDI 489
           + +T+ +++      E         E  + + HN  +D   L R  + +         D 
Sbjct: 565 HGITEAMVATAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNFDNPVLDT 624

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           +L+S V+      H + ++  + L  T  E                 + +  A+ ++   
Sbjct: 625 VLLSAVVFGAAEGHSLDALTHR-LGITIPE-----------------EARHTALGDTVAT 666

Query: 550 LQLWLLLRPKLIVEKLLH 567
            + +L L P L    L  
Sbjct: 667 AEAFLRLLPALKARGLTT 684


>gi|254473302|ref|ZP_05086699.1| ribonuclease D [Pseudovibrio sp. JE062]
 gi|211957418|gb|EEA92621.1| ribonuclease D [Pseudovibrio sp. JE062]
          Length = 405

 Score = 39.3 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 69/208 (33%), Gaps = 27/208 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T+++ Q   KL      +          F  K   I I+  D               
Sbjct: 4   ITTTEELAQACAKLANSDFVTVDTEFLRETTFWPKLCVIQIANPDHA------------- 50

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDI 489
                  D+  ++   +   + ++    N   +K+ H  + D  +++  G        D 
Sbjct: 51  ----VLVDALAEDLDLEPFFALMR----NTDIVKVFHAARQDIEIIYHLGGFVPSPLFDS 102

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + + V   G S      +  K      + I KS + +    +   ++   +A+ +   +
Sbjct: 103 QVAAMVCGFGDSV-SYDQLVSKVTG---ERIDKSSRFTDWSRRPLTNKQLAYALADVTHL 158

Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMI 577
            +++L L+ +L  +   H  E  +   +
Sbjct: 159 REVYLFLKKQLEQKGRSHWVED-EMATL 185


>gi|116671305|ref|YP_832238.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116611414|gb|ABK04138.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 254

 Score = 39.3 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAIST--------------LDQKDDTSFKVETIFID 430
           +    A+F + T   ++  ++ +  +++                D   +   +   +   
Sbjct: 23  DKRPRAAFDLETTGRNSRAARIVTASVTVVDADGSVITEHEWLADPGIEIPAEASEVHGV 82

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS 482
            +     +      +T+E+ S L+  F ++    I  N  YD  VL     RYGI 
Sbjct: 83  TTERARLEGRPAAEVTRELASVLQGLF-DDGIPVIAFNASYDFTVLAAESARYGIP 137


>gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A]
          Length = 1457

 Score = 39.3 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 436 LEDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 493

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 494 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 551

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 552 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 605


>gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 383

 Score = 39.3 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 25/115 (21%)

Query: 462 FLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
            L + HN  +D+  L     R GIS        + +S  L      H + ++ ++     
Sbjct: 93  KLFVAHNASFDRGFLRGEFRRVGISFDPDVLCTVRLSRALFPSEKRHGLDALVERH---- 148

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
                    S +P D+         A+ ++++I Q W  L   + +E L    ER
Sbjct: 149 ---------SLVPSDR-------HRALADADLIWQFWQRLHTLVPLETLRAQIER 187


>gi|205357371|ref|ZP_02347252.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205322073|gb|EDZ09912.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 375

 Score = 39.3 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +               
Sbjct: 2   NYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANV--------A 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G     
Sbjct: 54  LIDPLGISDW--------------SPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A++ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--LSWGFAAMVEEYTGVA---LDKSESRTDWLARPLSERQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVWYLLPIAKKL 166


>gi|162951815|ref|NP_001106162.1| protein fto [Sus scrofa]
 gi|160425302|gb|ABX39495.1| fat mass and obesity associated [Sus scrofa]
          Length = 505

 Score = 39.3 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 12/185 (6%)

Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
           +E  +  K    ++++ D+ +  +     +   Q W L  PKLI+ +   V E L K + 
Sbjct: 8   EERERGAKKLRLLEELEDTWL-PYLTPKDDEFYQQWQLKYPKLILREAGSVPEGLHKEVQ 66

Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP-KQLGDILFTK 636
           +    +   G    +DL++    ++   +  L      L G   N     K L   LFT 
Sbjct: 67  EAFLALHKHGCLF-RDLVRIQGKDLLTPVSRL------LIG---NPGCTYKYLNTRLFTV 116

Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696
                G+  K  + +  A     +   D   I+ I    +L+  +    D++P  I    
Sbjct: 117 PWPVKGSDAKYNEAEIGAACQTFLKLNDYLQIETIQALEELAAKEKANIDTVPACIGPDF 176

Query: 697 QRVHT 701
            RV  
Sbjct: 177 PRVGM 181


>gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 32/198 (16%)

Query: 384 LETIGSASFKIITDTMDA-FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           L+ +    F   T  +      + + IA   +      + +V    ++        ST  
Sbjct: 505 LDKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAV 564

Query: 443 NTLTKEILSYLKKFFE--------NEHFLKIGHNIKYDKLVLHRYGISM-----RGFEDI 489
           + +T+ +++      E         E  + + HN  +D   L R  + +         D 
Sbjct: 565 HGITEAMVATAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNFDNPVLDT 624

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           +L+S V+      H + ++  + L  T  E                 + +  A+ ++   
Sbjct: 625 VLLSAVVFGAAEGHSLDALTHR-LGITIPE-----------------EARHTALGDTVAT 666

Query: 550 LQLWLLLRPKLIVEKLLH 567
            + +L L P L    L  
Sbjct: 667 AEAFLRLLPALKARGLTT 684


>gi|189200661|ref|XP_001936667.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983766|gb|EDU49254.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 298

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 54/138 (39%), Gaps = 23/138 (16%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM-------------SYVL-- 496
           LK   E+    K+  +++ D   L   Y +++    D+ +M              ++   
Sbjct: 87  LKTILESPTIPKVFFDVRNDSDALFAHYKVALSCIHDLQVMELATRPMTTGNSRQFLCSL 146

Query: 497 ------DSGRSSHDIASI-AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
                 ++  SS D+A+  A K       +  K    S+   +   ++VQ++ +++   +
Sbjct: 147 STCIRDNAPLSSTDLAAWTAIKEAGNALFDPKKGGSYSVFETRPLRTEVQDYCVQDVVYM 206

Query: 550 LQLWLLLRPKLIVEKLLH 567
             LW +   ++  +++  
Sbjct: 207 PLLWDIFEHRIQKDRMDE 224


>gi|209885458|ref|YP_002289314.1| ribonuclease D [Oligotropha carboxidovorans OM5]
 gi|209873654|gb|ACI93450.1| ribonuclease D [Oligotropha carboxidovorans OM5]
          Length = 386

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 63/202 (31%), Gaps = 36/202 (17%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T+ ++   ++L      +                              F  ET +
Sbjct: 2   ELISTTEQLKAVCERLAQHPFVTVDTE--------------------------FLRETTY 35

Query: 429 IDLSVHTSQDSTGKNTLTKEILS--YLKKFF---ENEHFLKIGHNIKYDK-LVLHRYGIS 482
             L       ST +  +   +     LK FF    NE  LK+ H  + D  +V H   I 
Sbjct: 36  YPLLCVVQLASTDEAVVVDALAEGIDLKPFFDLMANEKVLKVFHAARQDIEIVWHLANIV 95

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542
                D  + + VL  G S      +  +   +    + K+ + +    +    +   +A
Sbjct: 96  PHPVFDTQVAAMVLGYGDSI-AYDQLVGRITGHK---LDKTHRFTDWSRRPLTQEQTTYA 151

Query: 543 IENSNVILQLWLLLRPKLIVEK 564
           + +   +  ++L+L   L    
Sbjct: 152 LADVTHLRDVFLVLDADLKKRN 173


>gi|302927567|ref|XP_003054524.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256735465|gb|EEU48811.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1024

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 57/140 (40%), Gaps = 2/140 (1%)

Query: 551 QLWLLLRPKLIVEKLLHVYE-RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           +    L P +  + LL  +   ++K   ++++  +  G+ +  +  ++++A+     +  
Sbjct: 266 KNKPQLNPMMEKKTLLKDFTMEIEKLKSELIATRQRNGVYLSNETYEEMTAQSESRRIVN 325

Query: 610 EENIYDLSGEKFNL-SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           EE    L   + NL +  ++L ++  T +      +        T + L+Q     +   
Sbjct: 326 EEQAAKLETLESNLRNKVQELFNLQSTFMGLKKDHEGTKALLDDTKEVLDQTEIVLSATR 385

Query: 669 KNILEWRQLSKIKSTYADSL 688
           K++ E  ++ K      + L
Sbjct: 386 KSLAEETRIRKAHQKTEEKL 405


>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
          Length = 1444

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LEDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 481 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 592


>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
          Length = 1444

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LEDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 481 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 592


>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
 gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
 gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
 gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
 gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
 gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
 gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
 gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1444

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LEDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 481 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 592


>gi|146312020|ref|YP_001177094.1| ribonuclease D [Enterobacter sp. 638]
 gi|145318896|gb|ABP61043.1| ribonuclease D [Enterobacter sp. 638]
          Length = 384

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 55/203 (27%), Gaps = 29/203 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +           + +          ++ +   I +              T
Sbjct: 11  NYQMITTNDALATLCDVTRDFPAIALDTEFVRTRTYYPQLGLIQMYDGKNVSLIDPLGIT 70

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +  +                      ++   N    K  H    D  V    +GI    
Sbjct: 71  DWSPM----------------------RELLLNTAITKYLHAGSEDLEVFLNTFGIMPEP 108

Query: 486 FEDIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SGR  S   A++ +++       + KS   +  + +    +  ++A  
Sbjct: 109 LIDTQILA--AFSGRPLSWGFAAMVEEYTGIA---LDKSESRTDWLARPLTERQLDYAAA 163

Query: 545 NSNVILQLWLLLRPKLIVEKLLH 567
           +   +L +   L  +      L 
Sbjct: 164 DVFYLLPIAGQLMKEAEAAGWLD 186


>gi|4092765|gb|AAC99461.1| kinesin related protein 2 [Nectria haematococca]
          Length = 1024

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 57/140 (40%), Gaps = 2/140 (1%)

Query: 551 QLWLLLRPKLIVEKLLHVYE-RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609
           +    L P +  + LL  +   ++K   ++++  +  G+ +  +  ++++A+     +  
Sbjct: 266 KNKPQLNPMMEKKTLLKDFTMEIEKLKSELIATRQRNGVYLSNETYEEMTAQSESRRIVN 325

Query: 610 EENIYDLSGEKFNL-SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668
           EE    L   + NL +  ++L ++  T +      +        T + L+Q     +   
Sbjct: 326 EEQAAKLETLESNLRNKVQELFNLQSTFMGLKKDHEGTKALLDDTKEVLDQTEIVLSATR 385

Query: 669 KNILEWRQLSKIKSTYADSL 688
           K++ E  ++ K      + L
Sbjct: 386 KSLAEETRIRKAHQKTEEKL 405


>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
 gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
          Length = 1444

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LEDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 481 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 592


>gi|330808751|ref|YP_004353213.1| uvrABC system protein C [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376859|gb|AEA68209.1| uvrABC system protein C [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 607

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 81  KANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE-KEGFA 134
           K    K+P++L       QL + R       +P         D I+      A  K GF 
Sbjct: 453 KDGEGKLPDILLVDGGKGQLSMARDVLNELMVP---------DLILLGVAKGATRKAGFE 503

Query: 135 VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194
              ++       L   +  L+    ++  D  H   ++ I   +    +         + 
Sbjct: 504 TLYLNDAAHEFTLKGDSPALHLI--QQIRDEAH---RFAITGHRARRGKT---RRTSTLE 555

Query: 195 GIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
           G+ G+G      LL+ +G L+ +   +   I K     + + E  
Sbjct: 556 GVAGVGPTRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAESI 600


>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes
           Clip81459]
 gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 1444

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LEDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 481 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 592


>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
          Length = 1444

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LEDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 481 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 592


>gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
 gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
          Length = 707

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 23/176 (13%)

Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412
           ERL    ++   + +       + + + + +L       F   T  +       I I+I+
Sbjct: 481 ERLPPRPEFYDFSLADQAADQGELLDRPLAQL---SFVIFDTETTGLAPSEGDEI-ISIA 536

Query: 413 TLDQKDDTSFKVETI------FIDLS------VHTSQDSTGKNTLTKEILSYLKKFFENE 460
            +   +    + E           +            +          +L     F  + 
Sbjct: 537 GVRMVNGRILEGECFEQLVNPGRPIPKASIKFHGIRDEMVADKPGIATVLPQFSAFVGD- 595

Query: 461 HFLKIGHNIKYDKLVLH----RYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511
             + + HN  +D   +     + G+       D +L+S  L      H + +IA +
Sbjct: 596 -SVLVAHNAAFDMKFIRLKEGQCGLKFENPVLDTLLLSVFLHDHTPEHTLEAIANR 650


>gi|298481453|ref|ZP_06999645.1| 3'-5' exonuclease domain protein [Bacteroides sp. D22]
 gi|295086916|emb|CBK68439.1| Ribonuclease D [Bacteroides xylanisolvens XB1A]
 gi|298272317|gb|EFI13886.1| 3'-5' exonuclease domain protein [Bacteroides sp. D22]
          Length = 222

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF---EDIMLMSYVLDSGRSSHDIAS 507
             L    EN   +K+G ++K D ++LH+       F     I L  YV   G     +  
Sbjct: 87  QPLVDLLENPAVIKVGLSLKDDFMMLHKR----APFTQQSCIELQDYVRQFGIQDKSLQK 142

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           I   +    +++I KS++ S     +     +++A  ++   L ++ LL+ +L       
Sbjct: 143 I---YAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQ-ELKQTGDWE 198

Query: 568 V 568
           +
Sbjct: 199 I 199


>gi|160887119|ref|ZP_02068122.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483]
 gi|293370879|ref|ZP_06617424.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|299148614|ref|ZP_07041676.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23]
 gi|156107530|gb|EDO09275.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483]
 gi|292634095|gb|EFF52639.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|298513375|gb|EFI37262.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23]
          Length = 219

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF---EDIMLMSYVLDSGRSSHDIAS 507
             L    EN   +K+G ++K D ++LH+       F     I L  YV   G     +  
Sbjct: 87  QPLVDLLENPAVIKVGLSLKDDFMMLHKR----APFTQQSCIELQDYVRQFGIQDKSLQK 142

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           I   +    +++I KS++ S     +     +++A  ++   L ++ LL+ +L       
Sbjct: 143 I---YAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQ-ELKQTGDWE 198

Query: 568 V 568
           V
Sbjct: 199 V 199


>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513
           +   N + +K+ H  + D  +++  G +      D  + + V   G S      + QK  
Sbjct: 65  ELMANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVCGFGDSI-SYDQLVQK-- 121

Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERL 572
                +I KS + +    +    +  ++A+ +   +  ++L L+ +L  E   L + E +
Sbjct: 122 -IKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLWLTEEM 180

Query: 573 DKPMIDVVSQME 584
           +         M 
Sbjct: 181 NILESRDTYDMH 192


>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
          Length = 1444

 Score = 39.3 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LEDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 481 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 592


>gi|324500229|gb|ADY40116.1| InaD-like protein [Ascaris suum]
          Length = 1691

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 90/264 (34%), Gaps = 24/264 (9%)

Query: 206  LLLQEYGNL--ENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH-- 261
             + ++YG+   + IL+   ++       ++    +  ++S  +V +R+  P+ I +    
Sbjct: 1084 KIARKYGDFPGDAILLRLEKVPPGGLGLSLAGNRDRDKMSVFVVAIRSTCPLPIKIGDEL 1143

Query: 262  --------LILEDCNG-PRLISFLKALEFTKLINRVATTYDCDAANIEPVV--LDINTTE 310
                    L L   N   ++    +  +   L+ R     D  A   EP +     +   
Sbjct: 1144 LEVNGKVLLGLSHLNASAKIRECCEEGKLDLLLLRRFDALDEMAIRPEPKLSRSQTSPVC 1203

Query: 311  NKGIAIET---EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367
             +  A++       R T+++T +  S ++   + +   +            +  P + ++
Sbjct: 1204 AESAAVDATYIPGKRQTSVETKEQPSKTEIALESSKGVSDSGEPGAMTGPKTTQPSSENT 1263

Query: 368  YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427
              + V     + W    +   +A  +   +T+         + +S +   D        +
Sbjct: 1264 AVQSVENVHKKSW----QMERTAGIETGRETLIEIDKDGKGLGLSIVGGSDTVL--GTVV 1317

Query: 428  FIDLSVHTSQDSTGKNTLTKEILS 451
              ++    +    G+     ++L 
Sbjct: 1318 IHEVYPDGAAAMDGRLKPGDQVLE 1341


>gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
           18P13]
          Length = 1444

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 114/353 (32%), Gaps = 50/353 (14%)

Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338
           +    ++ +     D        + +    +    ++  +++            +++D  
Sbjct: 319 MPMDLMLVKRKIRMDNAPKKRVELHMHTTMSAMDAVSSASDLIARAQAWGHHAIAITDHG 378

Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV---QKLETIGSASFKII 395
               ++  P+ +      K  +     ++Y  + +  + +  +    K        F + 
Sbjct: 379 ---VAQAFPEAMNAIGKAKDFKVIYGCEAYV-VNDIAERKILIGETDKTVNDTIIIFDVE 434

Query: 396 TDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIF-IDLSVHTSQDSTGKNTLTKE---IL 450
           T  + A   +   I AI   + +   SF         +    +  +     +  E     
Sbjct: 435 TTGLSAERDRLTEIGAIKVKNMRVADSFHTYVNPERPIPPEITDLTGIHEGMVAEAPKAS 494

Query: 451 SYLKKFFE--NEHFLKIGHNIKYDKLVLH----RYGISMR-GFEDIMLMSYVLDSGRSSH 503
             LK+FF    E  + + HN ++D   +     R G      + D +++   +    + H
Sbjct: 495 QALKEFFAFCGEDPVLVAHNARFDTSFIDAAAGRAGQRYAYAYIDSLVLCQAMLPDLAKH 554

Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            +  +A+          LK  K     D          A  ++ ++ +++L L  +LI E
Sbjct: 555 KLNVVAKH---------LKLGK----FDH-------HRADNDAMMLAKIYLELVGRLITE 594

Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616
           K L     L+  +            +ID   LK     I     +  +N+Y L
Sbjct: 595 KKLEYLSELNTKVQ-----------KIDARKLKSFHQIILAKNQTGLKNLYRL 636


>gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus erythropolis SK121]
 gi|229321815|gb|EEN87610.1| ribonuclease D [Rhodococcus erythropolis SK121]
          Length = 431

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 451 SYLKKFFE--NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
             L+   E  N     + H+   D   L   G++     D  L   +  +G     +A+I
Sbjct: 89  QDLQPLAEVINP-LQWVLHSADQDLPGLAELGLTPAELFDTELAGRL--AGFERVGLAAI 145

Query: 509 AQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
            ++ L   R E+ K    +      + D+ +  +A  +  V+L+L   +  +L  +  L 
Sbjct: 146 VERTL---RVELRKGHGAADWSTRPLPDAWL-NYAALDVEVLLELRDAMEAELESQGKLE 201

Query: 568 VYER 571
             + 
Sbjct: 202 WAKE 205


>gi|198244835|ref|YP_002215323.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197939351|gb|ACH76684.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 375

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +               
Sbjct: 2   NYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANV--------A 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G     
Sbjct: 54  LIDPLGISDW--------------SPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A++ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--LSWGFAAMVEEYTGVA---LDKSESRTDWLARPLSERQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVWYLLPIAKKL 166


>gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5]
 gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5]
          Length = 229

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 19/139 (13%)

Query: 392 FKIITDTMDAFHS-KPIAIAIS-----TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
               T  +D     + + I         L  ++   +      +    +     +G+   
Sbjct: 9   LDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISGEFLK 68

Query: 446 TKEILSYLK-KFFE-NEHFLKIGHNIKYDKL-------VLHRYGI---SMRGFEDIMLMS 493
            K +   +   F E       I HN  +D         +L R  I    +    D ++M+
Sbjct: 69  DKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLNHELSLLKRTEIKLLELANTIDTLVMA 128

Query: 494 YVLDSGRSSHDIASIAQKW 512
             +  G S +++ ++ +++
Sbjct: 129 RSMFPG-SKYNLDALCKRF 146


>gi|205352517|ref|YP_002226318.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205359829|ref|ZP_02832566.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|207856676|ref|YP_002243327.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272298|emb|CAR37177.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205342684|gb|EDZ29448.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206708479|emb|CAR32800.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627575|gb|EGE33918.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 375

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +               
Sbjct: 2   NYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANV--------A 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G     
Sbjct: 54  LIDPLGISDW--------------SPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A++ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--LSWGFAAMVEEYTGVA---LDKSESRTDWLARPLSERQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVWYLLPIAKKL 166


>gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
 gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
          Length = 1437

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 103/330 (31%), Gaps = 35/330 (10%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           LE      F + T  + A +   I +A   +   +  D           LS         
Sbjct: 416 LEDATYVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDRFEAFANPHHPLSATTIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-------RGFED 488
           + D         +++   K++   +  + + HN  +D   L+     +           D
Sbjct: 476 TDDMVKDAPDVVDVVRDFKEWIGQD--ILVAHNASFDMGFLNTAYKRLLKTDKASNPVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +   L     +H + ++ +K+   L+   + I  +  +   + K+     ++     
Sbjct: 534 TLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRAIYDAEATGYLMLKMLKDAAEKDIA-- 591

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EISK 604
                     L   +      + Y+R  +P   ++     TG++ +   L  +S      
Sbjct: 592 ------YHDQLNENM---GQSNAYQRS-RPYHAILIAQNETGLK-NLFKLVSLSHIHYFY 640

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  +  +  +   E   + S    G++ F  +   S  + +         ++       
Sbjct: 641 RVPRIPRSQLEKYREGLIIGSACDKGEV-FEGMMQKSPDEVEDIAAFYDYLEVHPPEVYQ 699

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           + +   ++   +  K   T    L   +NK
Sbjct: 700 HLLQLELVRDERALKEIITNIVKLGEKLNK 729


>gi|116513938|ref|YP_812844.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093253|gb|ABJ58406.1| 3'-5' exonuclease with to CRISPR-associated protein from COG1343
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 290

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 59/173 (34%), Gaps = 7/173 (4%)

Query: 311 NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK 370
           N G    T +      +   F +       ++ +       +   + +     N   + K
Sbjct: 48  NIGNGEATLVYNTNNEQGYAFKTTRKSKQVVDLDGMLFVKHVVNQETVKHGFSNAAKFHK 107

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
               + ++  V   +     +  I T  ++    + ++I     D  +      + I + 
Sbjct: 108 AHKAEKMRASVAATKQKRFVAVDIETTGLNTESDQILSIGAVKHDGIEFYRLIKQDIDVP 167

Query: 431 -----LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                L+  TS+  + +    ++ L  L  F  N     +G+N ++D + L+R
Sbjct: 168 KQIVELTGITSEMLSKEGVPLQDALEELTDFVGN--VPIVGYNFRFDSVFLNR 218


>gi|62180380|ref|YP_216797.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194734944|ref|YP_002114851.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197248423|ref|YP_002146207.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197301010|ref|ZP_02662940.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205360221|ref|ZP_02681919.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|62128013|gb|AAX65716.1| RNase D, processes tRNA precursor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194710446|gb|ACF89667.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197212126|gb|ACH49523.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197289302|gb|EDY28669.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205350690|gb|EDZ37321.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|322714855|gb|EFZ06426.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 375

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +               
Sbjct: 2   NYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANV--------A 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G     
Sbjct: 54  LIDPLGISDW--------------SPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A++ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--LSWGFAAMVEEYTGVA---LDKSESRTDWLARPLSERQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVWYLLPIAKKL 166


>gi|312867475|ref|ZP_07727684.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
 gi|311097176|gb|EFQ55411.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
          Length = 817

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 83/248 (33%), Gaps = 23/248 (9%)

Query: 385 ETIGSASFKIITDTMDAFHSKP-IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS---T 440
           +    A   +   +  +      + I I        +          L  H  Q +    
Sbjct: 4   QKRKYAIVDLEATSAGSNAKIIQVGIVIVEDGVITQSYETDVNPHERLDEHIKQLTGLTD 63

Query: 441 GKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RYGISMRGFE-DIMLMSY 494
            +     E     K+ FE  E  + + HN+K+D  +L       G  +     D + +S 
Sbjct: 64  ARLRKAPEFAQVAKEIFELIEDAVFVAHNVKFDANLLAEALFWEGFELTTPRIDTVELSQ 123

Query: 495 VLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQ-EHAIENSNVIL 550
           +       +++ ++A +    L +    +  +  ++  + K+ +        +  + + +
Sbjct: 124 IFYPTLERYNLGALAAELQIELHHAHSALADAMATAQLLLKVREKIASLPRGLIENLLSM 183

Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL----LKQVSAEISKNL 606
              L+   +L++E  L     L  P   V    EI G+ + +       + +S +   N+
Sbjct: 184 ADCLIYESRLLIEDALED-SSLFLPSHLV----EIHGLYLRKQQQFLESRHLSEQFELNM 238

Query: 607 LSLEENIY 614
             L    Y
Sbjct: 239 QLLGMEAY 246


>gi|238926233|ref|ZP_04657993.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
 gi|238885913|gb|EEQ49551.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
          Length = 179

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 47/113 (41%), Gaps = 17/113 (15%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T     F S    + ++ ++   +T   V++++  +      D+   N ++  +++
Sbjct: 7   FDTETTG---FRSDDEVLTLAVVNGTGETM--VDSMYAPVRKAEWPDAERINRISPAMVA 61

Query: 452 ----------YLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--RGFEDIMLM 492
                      L+  F     L +G+NI++D  +L + GI +      D+ML 
Sbjct: 62  DCDPILTHREELECLFNAPDTLLVGYNIEFDIRLLAQSGIRITNANRHDVMLA 114


>gi|237715608|ref|ZP_04546089.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408617|ref|ZP_06085163.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646256|ref|ZP_06723909.1| 3'-5' exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294805802|ref|ZP_06764678.1| 3'-5' exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|229444317|gb|EEO50108.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353482|gb|EEZ02576.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638389|gb|EFF56754.1| 3'-5' exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294446978|gb|EFG15569.1| 3'-5' exonuclease [Bacteroides xylanisolvens SD CC 1b]
          Length = 222

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF---EDIMLMSYVLDSGRSSHDIAS 507
             L    EN   +K+G ++K D ++LH+       F     I L  YV   G     +  
Sbjct: 87  QPLVDLLENPAVIKVGLSLKDDFMMLHKR----APFTQQSCIELQDYVRQFGIQDKSLQK 142

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           I   +    +++I KS++ S     +     +++A  ++   L ++ LL+ +L       
Sbjct: 143 I---YAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQ-ELKQTGDWE 198

Query: 568 V 568
           +
Sbjct: 199 I 199


>gi|117919429|ref|YP_868621.1| 3'-5' exonuclease [Shewanella sp. ANA-3]
 gi|117611761|gb|ABK47215.1| 3'-5' exonuclease [Shewanella sp. ANA-3]
          Length = 303

 Score = 39.3 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 23/142 (16%)

Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397
           T    +  TP  L   R +   +  +      ++V    +   +Q+L       F   T 
Sbjct: 73  TDAELANLTPLSLVDIRGEIREERRVEMH--VELVTLDKLATALQQLSRESVLGFDTETR 130

Query: 398 -TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456
            + +     P  +++  L   D                       +  +  E L+ LK  
Sbjct: 131 ASFEPGVQHP--LSLVQLATSDTCY------------------LFQQAVLGERLAELKPL 170

Query: 457 FENEHFLKIGHNIKYDKLVLHR 478
            ENE  LK+G  ++ D   L R
Sbjct: 171 LENEQILKVGIGLRGDGQALKR 192


>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1443

 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 75/217 (34%), Gaps = 28/217 (12%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           +LE      F + T  + +       I       KD T  K   +F+   +  S  +T  
Sbjct: 390 ELEKGTYCVFDLETTGLSSRFDHI--IEFGGQIMKDRTCIKSLQLFVKPPIALSAFTTEL 447

Query: 443 NTLTKEILSYLKKFFE--NEHFLKIG------HNIKYDKLVLHRYGIS-------MRGFE 487
             +++E +   K F E  +E    IG      HN  +D   L    +        M    
Sbjct: 448 TNISEENMKNAKPFAECVDEILEFIGDSILVAHNASFDYGFL-NAELERIGRKPLMNPVI 506

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D + ++  +   R  + + ++A+++     +++          D    +QV  H + +  
Sbjct: 507 DTLDLARSM-MDRKGYRLGNLARQYGIRYDEDVA----HRADYDAEVLAQVFMHMLNDLK 561

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
                 +    +L   +    + ++    + ++++  
Sbjct: 562 -----HIKTLKQLQDMQDPDCFNKVRDKHVTILAKNM 593


>gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon
 gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2]
          Length = 229

 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 19/139 (13%)

Query: 392 FKIITDTMDAFHS-KPIAIAIS-----TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
               T  +D     + + I         L  ++   +      +    +     +G+   
Sbjct: 9   LDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFDAYRIHGISGEFLK 68

Query: 446 TKEILSYLK-KFFE-NEHFLKIGHNIKYDKL-------VLHRYGI---SMRGFEDIMLMS 493
            K +   +   F E       I HN  +D         +L R  I    +    D ++M+
Sbjct: 69  DKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLNHELSLLKRAEIKLLELSNAIDTLVMA 128

Query: 494 YVLDSGRSSHDIASIAQKW 512
             +  G S +++ ++ +++
Sbjct: 129 RSMFPG-SKYNLDALCKRF 146


>gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 180

 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 869 YDEINSPKSSIR-NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927
           Y+ + S K   R        +   +Q  + DI   AM ++            ++  +HDE
Sbjct: 86  YEGVGSTKKWERIESYGPKFVENIVQAVSRDILCYAMKTLR--------HCFIVGHVHDE 137

Query: 928 LVFEVPEE 935
           L+ E   +
Sbjct: 138 LIIECSPD 145


>gi|260171573|ref|ZP_05757985.1| hypothetical protein BacD2_06865 [Bacteroides sp. D2]
 gi|315919887|ref|ZP_07916127.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693762|gb|EFS30597.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 219

 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF---EDIMLMSYVLDSGRSSHDIAS 507
             L    EN   +K+G ++K D ++LH+       F     I L  YV   G     +  
Sbjct: 87  QPLVDLLENPAVIKVGLSLKDDFMMLHKR----APFTQQSCIELQDYVRQFGIQDKSLQK 142

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           I   +    +++I KS++ S     +     +++A  ++   L ++ LL+ +L       
Sbjct: 143 I---YAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQ-ELKQTGDWE 198

Query: 568 V 568
           V
Sbjct: 199 V 199


>gi|195873245|ref|ZP_02696622.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634367|gb|EDX52719.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 375

 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +    + +    + +          ++ +   I +               
Sbjct: 2   NYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANV--------A 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
           +   L +                 S LK    +    K  H    D  V    +G     
Sbjct: 54  LIDPLGISDW--------------SPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A++ +++       + KS   +  + +    +  E+A  
Sbjct: 100 LIDTQILAAFCGRP--LSWGFAAMVEEYTGVA---LDKSESRTDWLARPLSERQCEYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVWYLLPIAKKL 166


>gi|313681812|ref|YP_004059550.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154672|gb|ADR33350.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
           DSM 16994]
          Length = 232

 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 14/182 (7%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS---VHTSQDSTGKNTLTKE 448
               T  ++A   +  A+ + T D+               S    H + +         E
Sbjct: 4   LDTETTGLEA-KDRICALGMITEDEAHYELINPGKKIPPSSSAIHHITNEMVKDAPAFAE 62

Query: 449 ILSYLK-KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506
            LS  K K       + + HN  ++  +L + G++ +G   D +  S  L        + 
Sbjct: 63  SLSAEKLKLLNTPETILVSHNAPFELDMLQKEGLAWQGRIIDTLKCSKSL--------MD 114

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566
            +    L + R E+   R+ +    +     V  HA+ ++     +   L     +E+L+
Sbjct: 115 DLEGYALQFLRYELRLYREEANVFKEHEIPIVPHHALSDALHTKMVLEYLLDLADIERLI 174

Query: 567 HV 568
            +
Sbjct: 175 EI 176


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1437

 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 106/330 (32%), Gaps = 35/330 (10%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           LE      F + T  + A +   I +A   +   +  D           LS         
Sbjct: 416 LEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-------RGFED 488
           + D         +++   +++  ++  + + HN  +D   L+     +           D
Sbjct: 476 TDDMLRDAPDVVDVIRDFREWIGDD--ILVAHNASFDMGFLNVAYKKLLEVEKAKNPVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +   L     +H + ++ +K+   L+   + I  +  ++  + K+      E  I  
Sbjct: 534 TLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRAIYDTEATAYLLLKM-LKDAAEKGI-- 590

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EISK 604
                Q    L   +      + Y+R  +P    +  +  TG++ +   L  +S      
Sbjct: 591 -----QYHDELNENM---GQSNAYQRS-RPYHATLLAVNSTGLK-NLFKLVSLSHIHYFY 640

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  +  +  +   E   + S    G++ F  +   S  + +         +++      
Sbjct: 641 RVPRIPRSQLEKYREGLLIGSACDRGEV-FEGMMQKSPEEVEDVASFYDYLEVQPPEVYR 699

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           + +   ++   +  K        L   +NK
Sbjct: 700 HLLELELVRDEKSLKEIIANITKLGEKLNK 729


>gi|300933650|ref|ZP_07148906.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM
           45100]
          Length = 226

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 58/152 (38%), Gaps = 17/152 (11%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD------------DTSFKV 424
           +   + + +     SF + T   D    + +  A+ +++ ++            +   + 
Sbjct: 1   MNAPIPRFDPANMLSFDLETTGTDPKTCRIVTSAMISIEGRERKDQELLADPGVEIPEQA 60

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG--IS 482
             +    + +  ++ +  + +  + +  +++ ++    L + +N  YD  VL       +
Sbjct: 61  TAVHGITTEYARENGSPHDEVLAQTIETIREAWQRGATL-VVYNAPYDLSVLRALEPSFT 119

Query: 483 MRG-FEDIMLMSYVLDSGRSSH-DIASIAQKW 512
           + G   D +++   +D  R     + ++ + +
Sbjct: 120 VDGLVFDPLVVDRAMDPYRKGKRRLENVCEHY 151


>gi|289705138|ref|ZP_06501542.1| exonuclease [Micrococcus luteus SK58]
 gi|289558166|gb|EFD51453.1| exonuclease [Micrococcus luteus SK58]
          Length = 228

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 33/211 (15%)

Query: 390 ASFKIITDTMDAFHSKPI----------AIAISTLDQKDDTSFKVET----IFIDLSVHT 435
           A F + T   D   +  +            A S+ +   D    +      +    +   
Sbjct: 9   AGFDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDPGVPIPAEAAEVHGVTTERA 68

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM---RGFED 488
             +         EI   L+  F       +  N  YD  V+     R+G++    R   D
Sbjct: 69  QAEGMPAAQGVAEITETLRDLFA-AGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVID 127

Query: 489 IMLMSYVLDSG-----RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA- 542
                +VLD       +    ++++++ +   T +    S   ++   +++D+   ++  
Sbjct: 128 P----FVLDKQVDRFRKGKRTLSAVSEHY-GVTLENAHTSAADALAAVQVADALAAQYEQ 182

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
           +  +   L    +       E       R D
Sbjct: 183 LRMAPADLHERQVRWKAEQAESFEQYLRRKD 213


>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
          Length = 236

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 77/224 (34%), Gaps = 37/224 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +++   + I I    L     T                 D+   + +T E L 
Sbjct: 6   FDTETTGLESKLDRVIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAVHGITPEFLK 65

Query: 452 YLKKFFEN---------EHFLKIGHNIKYDKLV----LHRYGISMRGFE---DIMLMSY- 494
             K  F +         +    + HN  +D         R G  + G E   D + ++  
Sbjct: 66  D-KPVFADIVEDLVAFFDGAKWVAHNATFDMGFINAEFERLGRPLVGPEHVIDTLSLARR 124

Query: 495 -------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
                   LD+    + I +         +  + L+    E+L  R+++  +++  +S  
Sbjct: 125 KHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMLGGRQATFGLEQSGNSDK 184

Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582
           +    ++SNV +++    RPK +  +L    +     ++  + Q
Sbjct: 185 RSRT-QDSNVTVEIAA--RPKTLASRLTEAEQERHAALVKRLGQ 225


>gi|154277567|ref|XP_001539624.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413209|gb|EDN08592.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 272

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRGFEDIMLM 492
             LK   E     K+  +++ D   L   +GI ++G ED+ L 
Sbjct: 79  KSLKSILECPATPKVFFDVRNDSNALFFHFGIRLQGVEDLQLE 121


>gi|189236369|ref|XP_001811750.1| PREDICTED: similar to exonuclease 3-5 domain-like 1 [Tribolium
           castaneum]
 gi|270005886|gb|EFA02334.1| hypothetical protein TcasGA2_TC008002 [Tribolium castaneum]
          Length = 313

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 450 LSYLKKFFENEHFLKIGHNIK--YDKLVLHRYGISMRGFEDIM 490
           L  L++  E+ +  K+ H+    +D  + H+YG+ M+   D  
Sbjct: 166 LKTLREVLESGYICKVVHDGGALFDC-LYHKYGVEMKNIFDTQ 207


>gi|169601620|ref|XP_001794232.1| hypothetical protein SNOG_03678 [Phaeosphaeria nodorum SN15]
 gi|160705977|gb|EAT88883.2| hypothetical protein SNOG_03678 [Phaeosphaeria nodorum SN15]
          Length = 721

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 23/130 (17%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLD--------SGRSSH 503
           LKK  E    LK+G  +K D   L RY  I  +G  +   +S + +        + + S+
Sbjct: 205 LKKILETPDILKVGVAVKGDFTRLERYLNIQPQGVFE---LSRLHNLVEGNITSAQQVSN 261

Query: 504 DIASIAQKWLSYTRKEILKSRK-----------SSIPIDKISDSQVQEHAIENSNVILQL 552
            +  +A + L + +  + K  +                 K  D Q  ++A  ++    +L
Sbjct: 262 KLVGLAAQVLQHLQLPLYKGEQLADDPADTASVRESDWSKPLDLQQIQYAAADAYAGFRL 321

Query: 553 WLLLRPKLIV 562
           + +L  K   
Sbjct: 322 YDILEYKRKQ 331


>gi|16579841|gb|AAL26656.1| unknown [Staphylococcus aureus]
          Length = 83

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951
           +Q  A+ I +  ++ V+K+ +  + + +++L IHD ++ E  +EE    +Q +   M+  
Sbjct: 5   VQTVASYIFKHILLEVYKA-QCTQKSFQIILPIHDAIMIECDDEE---TAQSVAQLMKSK 60

Query: 952 CLPKIN 957
                N
Sbjct: 61  ANKLFN 66


>gi|89095317|ref|ZP_01168236.1| excinuclease ABC subunit C [Oceanospirillum sp. MED92]
 gi|89080436|gb|EAR59689.1| excinuclease ABC subunit C [Oceanospirillum sp. MED92]
          Length = 613

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 22/159 (13%)

Query: 74  NEIYPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128
           +  Y   K    K+P++L       Q+           I  + + G              
Sbjct: 451 HRRYSRIKKEEAKLPDLLIVDGGKGQVTQAMEVLDELQIAQVLVIGIAKGPT-------- 502

Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188
            K GF V I S D     ++         + +   D  H   ++ I   +    +A    
Sbjct: 503 RKAGFEVLI-SGDTGDETVL-ENDSGALHLLQHIRDEAH---RFAITGHRARRGKARKRS 557

Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENI-LINASRIKQ 226
            +++IPG+   G K    LL+ +G ++ I   +   I +
Sbjct: 558 VLEDIPGV---GPKRRRELLRHFGGIQEIQRASVEEIAK 593


>gi|328885949|emb|CCA59188.1| putative DNA polymerase III epsilon subunit [Streptomyces
           venezuelae ATCC 10712]
          Length = 240

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 18/115 (15%)

Query: 385 ETIGSASFKIITDTMDAFHSKPIAIAI-------------STLDQKDDTSFKVETIFIDL 431
                  F + T   D   ++ +  +I                D       +   I    
Sbjct: 4   HGEPLVGFDLETTGTDPLEARIVTASIVGFHDGRVVRQRDWLADPGIRIPEQASAIHGIS 63

Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS 482
           S   + +      +  EI   L  ++ N+    + +N  +D  +L     R+G+ 
Sbjct: 64  SERAAAEGRPVREVADEIAETLTGYW-NQGVPVVAYNASFDLTLLAAELRRHGLP 117


>gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 239

 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 48/193 (24%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS----------VHTSQDSTG 441
           F   T  +D    + I I    L     T                         S D   
Sbjct: 6   FDTETTGLDPDVERVIEIGGVELWNHIPTGKNYHAFIRPAGRKVDPAAFDVHGISDDFLA 65

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE----------DIML 491
              L  EI     +FF       I HN  +D   L+     ++  +          D + 
Sbjct: 66  DKPLFSEIADEFLEFFSGAKL--IAHNAAFDVRFLNA---ELKRIDQPPIDPSVVIDTLP 120

Query: 492 MSY--------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPIDKIS 534
           M+          LD+  S   + +         +  + L+    E++  R++++ +    
Sbjct: 121 MARRKFPMAPATLDALCSRFSVDTSRRDKHGALLDSELLAEVYIELIGGRQAALGLA--- 177

Query: 535 DSQVQEHAIENSN 547
              V+E A E+++
Sbjct: 178 ---VEEDAHEDAD 187


>gi|260825215|ref|XP_002607562.1| hypothetical protein BRAFLDRAFT_208062 [Branchiostoma floridae]
 gi|229292910|gb|EEN63572.1| hypothetical protein BRAFLDRAFT_208062 [Branchiostoma floridae]
          Length = 162

 Score = 38.9 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 99  RLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158
           +   + FGIP ++    EA+   A      + EG     I+ D D+              
Sbjct: 42  QELLRLFGIPYVQSP-TEAEAQCAFLDQSKQTEGT----ITDDSDVWLFGGRQVYKNFFS 96

Query: 159 KEEKIDI---EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215
           ++  +++   + V+ +  +   +++    LTG   D   GI G+G   A  +LQE+   E
Sbjct: 97  QQRDMEVFKYKDVVSQLAMDRSRLINFALLTG--SDYTEGIQGVGKVLAMEVLQEFPG-E 153

Query: 216 NILI 219
            I  
Sbjct: 154 GIAA 157


>gi|148245893|gb|ABQ52908.1| DNA polymerase [uncultured marine microorganism]
          Length = 119

 Score = 38.9 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI
Sbjct: 1   AKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQEHFGGNI 53


>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 1444

 Score = 38.9 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           L+      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LQDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGIS--MRGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 481 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKADNAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 592


>gi|237721388|ref|ZP_04551869.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449184|gb|EEO54975.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 219

 Score = 38.9 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF---EDIMLMSYVLDSGRSSHDIAS 507
             L    EN   +K+G ++K D ++LH+       F     I L  YV   G     +  
Sbjct: 87  QPLVDLLENPAVIKVGLSLKDDFMMLHKR----APFTQQSCIELQDYVRQFGIQDKSLQK 142

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567
           I   +    +++I KS++ S     +     +++A  ++   L ++ LL+ +L       
Sbjct: 143 I---YAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQ-ELKQTGDWE 198

Query: 568 V 568
           V
Sbjct: 199 V 199


>gi|254286229|ref|ZP_04961188.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
 gi|150423644|gb|EDN15586.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
          Length = 209

 Score = 38.9 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 17/124 (13%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETI 427
            Q+  +        S    T ++D   ++ + IA         I++   +          
Sbjct: 18  YQRLFETARHHEYVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLD 77

Query: 428 FIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVL-----HRYGI 481
              + +H  +     + L+ KE L  L +F  N     +G++I YDK +L        G 
Sbjct: 78  SGSVRIHRIRHQDLHDGLSEKEALLQLIEFIGN--RPLVGYHIHYDKTILDIACRKHLGF 135

Query: 482 SMRG 485
            +  
Sbjct: 136 PLPN 139


>gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
 gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
          Length = 1464

 Score = 38.9 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 20/146 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---------DTSFKVETIFIDLSV 433
           +L+      F + T  + A H+  I IA S + + +         D  + +     +L+ 
Sbjct: 420 ELKEATYVVFDVETTGLSAVHNDLIQIAASKMHKGNIIEQFDEFIDPGYPLSAFTTELTG 479

Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYG------ISMRGF 486
            T     G   L + +L   + F +    + + HN  +D   +   Y       IS +  
Sbjct: 480 ITDNHVKGAKPLLQ-VLQEFQVFCQ--GTVLVAHNATFDVGFMNANYERNQLPTIS-QPV 535

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKW 512
            D +  +  L      H +  + +++
Sbjct: 536 IDTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score = 38.9 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 19/145 (13%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-------IFIDLSVH 434
           +++        I T  +    S+ I I A++  + +    F            F      
Sbjct: 364 EIDQERYVIVDIETTGLHPMFSEIIEIGAVAIENGQITDEFHSFVKPSEKLNAFTVQFTK 423

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-------RYGISMRGFE 487
            +          +E+L    +F ++     + HN  +D   L        +        +
Sbjct: 424 ITDQMLANQPSIEEVLPKFMEFCKDTTL--VAHNANFDYRFLRYWIEKSLKLNWEPAVID 481

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
            + L   ++    SS+++  +A  +
Sbjct: 482 TLALAKKLVR--LSSYNLEKLASHF 504


>gi|320547177|ref|ZP_08041471.1| DNA polymerase III [Streptococcus equinus ATCC 9812]
 gi|320448164|gb|EFW88913.1| DNA polymerase III [Streptococcus equinus ATCC 9812]
          Length = 827

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 36/194 (18%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSVHT--- 435
           + ++ +   A   +      A  ++ I + I  ++ K    T          L+ H    
Sbjct: 1   MMQVNSQKYAVVDLEATGAHAM-AEIIQVGIVIIENKKIVKTYQTDVNPHEPLTEHIINL 59

Query: 436 ---SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR----YGISMR-GFE 487
              + +   K     ++   +     +   + + HN+K+D  +L       G  +R    
Sbjct: 60  TGITDEQLAKAPDFSQVAQKIYNMISD--CVFVAHNVKFDANLLAEKLFLEGYELRTPLV 117

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D + +S V       + +  +A                    + ++  +     AI ++ 
Sbjct: 118 DTVELSQVFYPTLEKYTLGHLA-------------------DVLQLDLTDAHT-AISDAY 157

Query: 548 VILQLWLLLRPKLI 561
              QL L L+ K+ 
Sbjct: 158 ATAQLLLKLKEKMA 171


>gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 473

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 11/135 (8%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTS-----FKVETIFIDLSVHTSQDSTGKN 443
                + T        +   IA+   +   + S        ET         +    G  
Sbjct: 5   YVLLDLETTGATPLVDRITEIALIRFENGQEVSRWQTLVNPETAIPPFIQRLTGIDDGMV 64

Query: 444 TLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLHRY----GISMR-GFEDIMLMSYVLD 497
                      +  ++ E  +   HN+++D   L       GI +R      + +S  L 
Sbjct: 65  ATAPHFKEVAGELLDHLEGAVLCAHNVRFDHGFLKNEFKRIGIDLRQKVLCTVKLSRKLY 124

Query: 498 SGRSSHDIASIAQKW 512
               SH + SI ++ 
Sbjct: 125 PQHRSHSLDSIIERH 139


>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 1479

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 82/257 (31%), Gaps = 32/257 (12%)

Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339
           +F K+  ++ +  D        +      +   G++  T+     +    +  + +D T+
Sbjct: 318 DFKKINKQIISRTDDAKTKRVELHAHTKMSVMDGVSDPTDYLELISSWNHKAIAFTDHTN 377

Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV------QKLETIGSASFK 393
                   + L     +++ Q  I    Y   +N  +   W       Q L+      F 
Sbjct: 378 VQAFPDIYKALNSVNKKRIDQEKI-KAIYGLEINMLNNDLWYVKNPKNQNLKDAKMVFFD 436

Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID-------------LSVHTSQDST 440
           + T  +     + I       + K     K++ +                ++    ++  
Sbjct: 437 LETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKDFTKKLTNINEEMLENKP 496

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR------YGISMRGFEDIMLMSY 494
           G     KEI   +K        + + HN  +D   L        YG       D + +S 
Sbjct: 497 GIEVAFKEINQVIK------DAILVAHNANFDYTFLSHWSEKLGYGKLENTIIDTLTISR 550

Query: 495 VLDSGRSSHDIASIAQK 511
           ++     SH + S+A++
Sbjct: 551 IIYPELKSHRLGSLAKR 567


>gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1516

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 15/151 (9%)

Query: 375 KDIQQWVQKLETIGS----ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
            D++Q V   +          F I T    +  ++ I I    ++           +  D
Sbjct: 474 DDLKQLVDNSKNQSLSDSYVVFDIETTGFSSSRNRIIEIGAVKVENGTIADKFSTFVNPD 533

Query: 431 LSVHTSQDSTGK-----NTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RYG 480
           + +    +              +I   L +F E   + + + HN  +D   +     R  
Sbjct: 534 VPIPFEIEKLTGINDNMVLPYPKINEILPRFLEFCGNSVLVAHNAAFDVSFIAYNAARLN 593

Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510
           ++      D + ++ +L    + + + ++A+
Sbjct: 594 LAFEPTVIDTVALARLLLPNLNRYKLDTVAK 624


>gi|330837264|ref|YP_004411905.1| 3'-5' exonuclease [Spirochaeta coccoides DSM 17374]
 gi|329749167|gb|AEC02523.1| 3'-5' exonuclease [Spirochaeta coccoides DSM 17374]
          Length = 298

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 40/217 (18%)

Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425
             YT I +       +      G                  +A+         +  F + 
Sbjct: 2   RDYTIIASDDAFLSLLDTWRQKGI---------------NLVAMDF-------EGEFNLH 39

Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY--LKKFFENEHFLKIGHNIKYD-KLVLHRYGIS 482
                L +    D      +   I+S   LK F E +   KI  +   D  LV  +YGI 
Sbjct: 40  VYGEHLCLIQLYDGHDFYLIDPFIVSARTLKSFLEADDIEKIMFDCASDASLVRKQYGIQ 99

Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE-- 540
           +R   D+ +M+  L       ++  + ++++      I +S  SS        +Q+    
Sbjct: 100 LRNICDLRVMAMALG---FMGNLTGLIEQYVPRNVPLIAESTDSSEKSGSKKKNQMTNWM 156

Query: 541 ----------HAIENSNVILQLWLLLRPKLIVEKLLH 567
                     +A+E+   +  L   L  ++    L  
Sbjct: 157 KRPLTPSQLVYALEDVAHLFVLRSALVAEIAKAGLEE 193


>gi|304389402|ref|ZP_07371365.1| ribonuclease D [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327212|gb|EFL94447.1| ribonuclease D [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 406

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 6/177 (3%)

Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455
           T    A   + +A A   +    + +           V   ++  G   +       L+ 
Sbjct: 23  TSAALARVCELVADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAFPDLEP 82

Query: 456 FF-ENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514
                     I H+   D   L   G+  +   D  L + +L+       +A++ ++ L 
Sbjct: 83  LSRAIGKAEWILHDATQDLPYLLELGMRPQLLFDTELAAKLLN--FQGFGLAAVLEQVLG 140

Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            +   + K   ++    +   S  Q +A  + + ++ L   L  +L         E+
Sbjct: 141 IS---LAKEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQ 194


>gi|300024345|ref|YP_003756956.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526166|gb|ADJ24635.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
          Length = 384

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 56/195 (28%), Gaps = 26/195 (13%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428
             I  T ++    + L      +          F      I ++  + +         I 
Sbjct: 2   QTITTTPELAALCETLSRSDYVAVDTEFLREQTFWPLLCLIQLAGPEAE--------AIV 53

Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFE 487
             L+                 L+       +   +K+ H  + D  +V  + G+      
Sbjct: 54  DPLAPGLD-------------LAPFYHLMADTSTVKVFHAARQDIEIVFLKSGVVPTPVF 100

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547
           D  + + V        D  S        T  ++ KS + +    +    +  ++A+ +  
Sbjct: 101 DSQVAAMVC----GFGDSISYVNLVKKTTGADLDKSSRFTDWSRRPLSPKQLDYALADVT 156

Query: 548 VILQLWLLLRPKLIV 562
            +  ++  LR  L  
Sbjct: 157 YLRDVYQRLRQTLDK 171


>gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
 gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 229

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 40/197 (20%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               T  +D     + + I    +  +  T  ++   +I+       ++   + L+ E L
Sbjct: 6   LDTETTGLDPLRGDRLVEIGCVEILNRMPTG-QIYHCYINPERDMPAEAFAVHGLSAEFL 64

Query: 451 SYLKKFFEN---------EHFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMS- 493
           S  K  F                + HN  +D       L R     I      D +L++ 
Sbjct: 65  ST-KPLFAEVAEEFLAFIADAPLVIHNASFDIGFINAELARLSQPPIPRDRLVDTLLLAR 123

Query: 494 ----------------YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
                           Y +D+ R +   A +  + L+    +++ +R+S +    I    
Sbjct: 124 RKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLIGARQSQL----ILAET 179

Query: 538 VQEHAIENSNVILQLWL 554
             E A   ++   +   
Sbjct: 180 GSERASRAADAPRRQRE 196


>gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 1009

 Score = 38.9 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 67/208 (32%), Gaps = 32/208 (15%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKD----DTSFKVETIFIDLSVHTS----QDSTG 441
            +  + T  + A     + +A       +      +F      I   V        +   
Sbjct: 9   IALDLETTGLHAEQDAILEVAAIKFQGSEVLDTFETFISPGRSIPYRVQRLTGIKPELLV 68

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-SMRGFEDIMLMSYVLDSGR 500
                  I   L  F  +     +GH+I +D   L R+G+       D   ++ VL    
Sbjct: 69  GAPPFDAISRQLHTFLGDY--PIVGHSIPFDVGFLRRWGLAHSNPMVDTFELATVLLPSL 126

Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
           SS+++  +A             S    +P D+         A+ ++ + +Q++L L  +L
Sbjct: 127 SSYNLGQVAH------------SLGIQVPSDR-------HRAMVDTVLAMQVFLSLYERL 167

Query: 561 IVEK--LLHVYERLDKPMIDVVSQMEIT 586
                 LL    RLD P    +      
Sbjct: 168 QTVDLALLQDLARLDAPRSWPLLHFFRH 195


>gi|218670444|ref|ZP_03520115.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 212

 Score = 38.9 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 27/216 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T D+    ++L      +          F  +   I ++        S  +E +   
Sbjct: 2   IETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMA--------SPTLEVLVDP 53

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDI 489
           L+                 L+   +   +   LK+ H  + D  ++   G +      D 
Sbjct: 54  LAKGID-------------LAPFFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDT 100

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + + V   G S      +  +  S    +   SR +      +SD Q+ E+A+ +   +
Sbjct: 101 QVAAMVCGFGDSV-SYDQLVSRIKSVHIDKS--SRFTDWSRRPLSDKQL-EYALADVTHL 156

Query: 550 LQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQME 584
             ++L L+ +L  E     + E +D         M 
Sbjct: 157 RDVYLSLKAELDREGRTSWLSEEMDILEARETYDMH 192


>gi|227833267|ref|YP_002834974.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
 gi|262184251|ref|ZP_06043672.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
 gi|227454283|gb|ACP33036.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
          Length = 407

 Score = 38.9 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 8/129 (6%)

Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506
            E+ + L      +    + H    D   L   G+      D  L +    +G +  ++A
Sbjct: 74  DELHAALAPVLNGQE--WVVHAAPSDLPSLAWLGLYPGMLFDTELAARF--AGFAHPNLA 129

Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKL 565
           ++    L     E+ K    S   +     + + +A  +  ++ +L + LR  L   +KL
Sbjct: 130 AMV---LELFDVELEKGYGDSDWSETPIPRKWRNYAALDVELLNELAVTLRDILAEQDKL 186

Query: 566 LHVYERLDK 574
              YE  ++
Sbjct: 187 DWAYEEFER 195


>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL F2-208]
          Length = 1447

 Score = 38.9 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           L+      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 426 LQDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 483

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 484 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 541

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 542 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 595


>gi|296117272|ref|ZP_06835863.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
 gi|295976165|gb|EFG82952.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
          Length = 421

 Score = 38.9 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 61/210 (29%), Gaps = 28/210 (13%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416
                         +  T ++     +L      +          +  +   + +++ D+
Sbjct: 22  MAPASRTEFPDPVLVTTTAELGAVSARLRREPFITIDTEFVRERTYWPELCLVQLASADE 81

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
                                D+          L+ L +   +E  +K+ H  + D  + 
Sbjct: 82  VVVV-----------------DALAPGMD----LAPLGELLADEGVIKVFHAARQDLEIF 120

Query: 477 HRYGISM-RGFEDIMLMSYVLDSGRSSH-DIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534
                 + +   D  + + V  +G        S+     S    +I KS + S    +  
Sbjct: 121 LHLFDRLPQPLFDTQVAAMV--AGYGDQVGYDSLVA---SVVGAQIDKSHRFSDWAARPL 175

Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            +   E+A  +   + +++  L  +L  E 
Sbjct: 176 SAAQIEYAAADVTYLREVYQRLVAQLDREG 205


>gi|256271259|gb|EEU06336.1| Din7p [Saccharomyces cerevisiae JAY291]
          Length = 430

 Score = 38.9 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 19/145 (13%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD--- 143
            PEM       +    +   IP I    FEAD  +     +   +G    IIS D D   
Sbjct: 126 TPEM----AKCIIDYCKLHSIPYIVAP-FEADPQMVYLEKMGLIQG----IISEDSDLLV 176

Query: 144 --LMQLVSPTTCLYDTVKEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPG 198
                L++        ++  K D   + + +    +  ++ + L  L G   D   GI  
Sbjct: 177 FGCKTLITKLNDQGKALEISKDDFSALPENFPLGELSEQQFLNLVCLAG--CDYTSGIWK 234

Query: 199 IGYKTAALLLQEYGNLENILINASR 223
           +G  TA  +++ Y  +++ILI   R
Sbjct: 235 VGVVTAMKIVKRYSEMKDILIQIER 259


>gi|41615212|ref|NP_963710.1| DNA repair and recombination protein RadA [Nanoarchaeum equitans
           Kin4-M]
 gi|73913726|sp|Q74MX9|RADA_NANEQ RecName: Full=DNA repair and recombination protein radA
 gi|40068936|gb|AAR39271.1| NEQ426 [Nanoarchaeum equitans Kin4-M]
          Length = 325

 Score = 38.9 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 187 GDSIDNIPGIPGIGYKTAALLL-QEYGNL--------ENILINASRIKQKKRRENILEYA 237
             S D+I  +PG+G KTA  L+   Y +L        E ++  A  I +   R+ I    
Sbjct: 7   PMSKDDIRSLPGVGPKTAEKLISAGYDSLIKIASASVEELMEAAD-IGEATARKIIEAAM 65

Query: 238 ETARL-----SRKLVMLRTD----VPITIPLEHLILEDCNGPRLISFLKAL 279
           E   L     + +++  R        ++  L+ L+        L  F    
Sbjct: 66  ERLGLLEFKTAEEVLEERQKTARITTMSKNLDSLLGGGIETAALTEFYGEY 116


>gi|312113633|ref|YP_004011229.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
 gi|311218762|gb|ADP70130.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
          Length = 404

 Score = 38.9 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 60/203 (29%), Gaps = 29/203 (14%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I +  D++     L      +          +  K   I ++        +  +E +   
Sbjct: 29  ITSITDLKTLCDALAGQPYVTVDTEFMRQTTYRPKLCLIQMA--------APGIEAVVDP 80

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFEDI 489
           L                  LS       N   +K+ H  + D  +V    G+      D 
Sbjct: 81  LPNLD--------------LSPFYALMANTAVVKVFHAARQDIEIVWQEAGVIPMPLFDT 126

Query: 490 MLMSYVL-DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            + +  L      S+   ++ +K L        K+ ++     +    +  E+A+ +   
Sbjct: 127 QIAAMALGHGDAISYG--ALVKKLLKKNHD---KTYQAIDWCQRPLGPKQLEYALGDVTY 181

Query: 549 ILQLWLLLRPKLIVEKLLHVYER 571
           +  ++  L+ +L         E 
Sbjct: 182 LRDVYAKLKQRLEQTGREPWLEE 204


>gi|238482067|ref|XP_002372272.1| 3-5 exonuclease, putative [Aspergillus flavus NRRL3357]
 gi|220700322|gb|EED56660.1| 3-5 exonuclease, putative [Aspergillus flavus NRRL3357]
          Length = 382

 Score = 38.9 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 57/202 (28%), Gaps = 17/202 (8%)

Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352
             D+    P +         G+  + E             +L  +        TP+   +
Sbjct: 114 SIDSNTKRPCISSSAAQLTTGLIKDAEKITHIVNPKIAIPALDSRPQLPKDSPTPKFAPI 173

Query: 353 ERL-QKLSQYPINNDSYTKIV-----NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406
               +  S     +    +I+       +  +   +           I     +A  +  
Sbjct: 174 SGAHKFWSHRLYKSPDGEEILVHYCKTLESAETISKMFSDEPILGLDIEWKA-NASAADG 232

Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466
           I   +S +         +  I +      ++D              LK+  E+   +K G
Sbjct: 233 ILKNVSLIQLASSRRIALFHIAMFRPARGAEDLVPPT---------LKRILESPDVIKAG 283

Query: 467 HNIKYDKLVLHRY-GISMRGFE 487
            +IK D   L +Y GI  RG  
Sbjct: 284 VSIKADCTRLRKYLGIETRGIF 305


>gi|323344490|ref|ZP_08084715.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
 gi|323094617|gb|EFZ37193.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
          Length = 899

 Score = 38.9 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 24/153 (15%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---ISTLDQKDDTSFKVETIFI----- 429
           Q + ++ E      F   T  +  F    + IA   I   +    + FKV          
Sbjct: 507 QDFYEEYENREIVIFDTETTGLSVFEDDILQIAAVTICRGEVVRGSEFKVFIATEREIPR 566

Query: 430 ---DLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRY-- 479
              D+     ++      L   E L     +  +   L  GHN  YD  +    L RY  
Sbjct: 567 KLGDIDNPIIEEMKHNRLLGHAEALQLFMNYVGDRTLL--GHNADYDYHILDYNLRRYLP 624

Query: 480 GISMRG----FEDIMLMSYVLDSGRSSHDIASI 508
            +S+      + D + +  +L+     + +  +
Sbjct: 625 QVSLAERCPKYFDSLKLIRLLEPDLREYKLKYL 657


>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes L99]
          Length = 1443

 Score = 38.9 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           L+      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 422 LQDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 479

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 480 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 537

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 538 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 591


>gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032]
 gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
           SAFR-032]
          Length = 1437

 Score = 38.9 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 103/330 (31%), Gaps = 35/330 (10%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           LE      F + T  + A +   I +A   +   +  D           LS         
Sbjct: 416 LEDATYVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDRFEAFANPHHPLSATTIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-------RGFED 488
           + D         +++   K++   +  + + HN  +D   L+     +           D
Sbjct: 476 TDDMVRDAPDVVDVVRDFKEWIGQD--ILVAHNASFDMGFLNTAYKRLLKTDKASNPVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
            + +   L     +H + ++ +K+   L+   + I  +  +   + K+     ++     
Sbjct: 534 TLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRAIYDAEATGYLMLKMLKDAAEKDIA-- 591

Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EISK 604
                     L   +      + Y+R  +P   ++     TG++ +   L  +S      
Sbjct: 592 ------YHDQLNENM---GQSNAYQRS-RPYHAILIAQNETGLK-NLFKLVSLSHIHYFY 640

Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664
            +  +  +  +   E   + S    G++ F  +   S  + +         ++       
Sbjct: 641 RVPRIPRSQLEKYREGLIIGSACDKGEV-FEGMMQKSPDEVEDIAAFYDYLEVHPPEVYQ 699

Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINK 694
           + +   ++   +  K   T    L   +NK
Sbjct: 700 HLLQLELVRDERALKEIITNIVKLGEKLNK 729


>gi|239918000|ref|YP_002957558.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665]
 gi|281415824|ref|ZP_06247566.1| DNA polymerase III subunit epsilon [Micrococcus luteus NCTC 2665]
 gi|239839207|gb|ACS31004.1| DNA polymerase III, epsilon subunit [Micrococcus luteus NCTC 2665]
          Length = 228

 Score = 38.9 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 33/211 (15%)

Query: 390 ASFKIITDTMDAFHSKPI----------AIAISTLDQKDDTSFKVET----IFIDLSVHT 435
           A F + T   D   +  +            A S+ +   D    +      +    +   
Sbjct: 9   AGFDLETTGRDPRTALIVTATLVMVDEHGRAASSAEWLVDPGVPIPAEAAEVHGVTTERA 68

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM---RGFED 488
             +         EI   L+  F       +  N  YD  V+     R+G++    R   D
Sbjct: 69  QAEGMPAAQGVTEITETLRDLFA-AGIPVVAFNGVYDFTVMDREARRHGLTPLEARPVID 127

Query: 489 IMLMSYVLDSG-----RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA- 542
                +VLD       +    ++++++ +   T +    S   ++   +++D+   ++  
Sbjct: 128 P----FVLDKQVDRFRKGKRTLSAVSEHY-GVTLENAHTSAADALAAVQVADALAAQYEQ 182

Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
           +  +   L    +       E       R D
Sbjct: 183 LRMAPAELHERQVRWKAEQAESFEQYLRRKD 213


>gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13]
          Length = 237

 Score = 38.9 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 83/247 (33%), Gaps = 32/247 (12%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +        T +      K +  + +  +            F +  V     + G +   
Sbjct: 1   MNLLYLDTETFSEADL--KKVG-SYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPR 57

Query: 447 KEILSYLKKFFENEHFLKIGHN-IKYD-KLVLHRYGISM--RGFEDIMLMSYVLDSGRSS 502
               + LK    + +   +G N + +D  ++ H +G  +      D M++++        
Sbjct: 58  DLRRAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAF-------R 110

Query: 503 H----DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN--SNVILQLWLLL 556
           H     +A++ +         + K ++    I + S    + + I    ++   + W   
Sbjct: 111 HALPGSLAALCEVL--NIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEF 168

Query: 557 --RPKLIVEKLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
               K  +  +  VY+++        +  ++ +   +   G ++D  L +     ++++ 
Sbjct: 169 IAYAKSDITSMREVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHK 228

Query: 607 LSLEENI 613
             L+E  
Sbjct: 229 EELQEEA 235


>gi|269861368|ref|XP_002650394.1| exonuclease I [Enterocytozoon bieneusi H348]
 gi|220066165|gb|EED43662.1| exonuclease I [Enterocytozoon bieneusi H348]
          Length = 327

 Score = 38.9 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 10/146 (6%)

Query: 84  RPKIPEMLLPQLPLVRLATQAFGIPAIEI--QGFEADDIIATYTYIAEKEGFAVTIISTD 141
           R  +  ++      +    +   I  +E     +EAD  +A    I     +   I+S D
Sbjct: 116 RDLMKRVVTITPDFIYDFIKELEILQVEYIIAPYEADSQMAYLNKI----NYVDHIMSED 171

Query: 142 KDLMQLVSPTT-CLYDTVKEEKIDIEHVIKKWG-IPPEKMVCLQALTGDSIDNIPGIPGI 199
            DL+   + +    Y+ +  +    E + K +G    + ++ +  L+G   D I  I GI
Sbjct: 172 SDLICYGAKSVLFKYNGIFVDHYKSEDLSKAYGSFFAKNILDICILSG--CDYINSIKGI 229

Query: 200 GYKTAALLLQEYGNLENILINASRIK 225
           G  TA  L Q+   +E  + + +  K
Sbjct: 230 GLITAVKLFQKEKTVEKFVTSLAHKK 255


>gi|229844476|ref|ZP_04464616.1| hypothetical protein CGSHi6P18H1_09180 [Haemophilus influenzae
           6P18H1]
 gi|229812725|gb|EEP48414.1| hypothetical protein CGSHi6P18H1_09180 [Haemophilus influenzae
           6P18H1]
          Length = 144

 Score = 38.9 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
            +            F ++ I   LS +    S         +++ L    EN    K+  
Sbjct: 16  GVHFYLSKNATFAGFTLDEIHE-LSNNLFSISATLIGFIFAVIAILVTITENPLIKKMRK 74

Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSY--VLDSGRSSHDI 505
           N  Y +++    G  + GF   ML+SY  +L S  + H +
Sbjct: 75  NGMYSEII-DHLGYLIAGFSTTMLLSYTCLLFSDENLHYL 113


>gi|269975301|gb|ACZ55525.1| putative exodeoxyribonuclease [Staphylococcus phage SA1]
          Length = 346

 Score = 38.9 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 58/167 (34%), Gaps = 24/167 (14%)

Query: 79  DYKANRPK--IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT 136
            Y+ NR     P  L+      R    +     +   GFEAD I+      AEK G    
Sbjct: 135 QYQGNRKDAVTPTHLVA----CREYLLSRPEFKLLKGGFEADSIV---IAKAEKMGKKAA 187

Query: 137 IISTDKDLMQLVSPTTCLYDTVKEEKIDIEH--VIKKWGIPPE-------------KMVC 181
           ++S DKDL Q            K   I I    V   W  P +             K +C
Sbjct: 188 LMSIDKDLRQAEGTYCIDMTYEKSPLIFIADNNVGDIWDCPIKSKPKAAKTVGVGFKFLC 247

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            QA+ GD+ DN  G+ G G       L+     +  L     +  KK
Sbjct: 248 YQAVAGDNADNYFGLKGAGKVAVMNALEGKETYKECLDAIYELYAKK 294


>gi|238756989|ref|ZP_04618177.1| Ribonuclease D [Yersinia aldovae ATCC 35236]
 gi|238704819|gb|EEP97348.1| Ribonuclease D [Yersinia aldovae ATCC 35236]
          Length = 373

 Score = 38.9 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +QQ  ++  T    +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITTNSALQQVCEQARTHTHVALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLPIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +                         +   ++   +K  H    D  V    +      
Sbjct: 62  QWQP----------------------FRALLQDLSVVKYLHAGSEDLEVFLNAFEQMPTP 99

Query: 486 FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SGR+ S   A +  ++      E+ KS   +  I +    +  ++A  
Sbjct: 100 MIDTQVLA--AFSGRTLSCGFAMLVNEFEGI---ELDKSESRTDWIARPLSEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L L   L
Sbjct: 155 DVFYLLPLAAKL 166


>gi|195542024|gb|ACF98221.1| putative DNA polymerase III epsilon subunit [uncultured bacterium
           1114]
          Length = 312

 Score = 38.9 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 19/145 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS---------FKVETIFIDLSVH 434
           L  +   +    T  +D    + +AI    L  +               +       ++H
Sbjct: 23  LSELPVTALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRPGISIPASASAIH 82

Query: 435 TSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISMRGFE-- 487
              D+         EI   L  +      + +GH++ +D  ++     R+G S       
Sbjct: 83  GIGDAMVAGAPGMAEIWPRLSPWLA--GRVVLGHHVDFDLAMIGAAARRHGFSWTEPFAL 140

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D   +   LD G S  D+   AQ+ 
Sbjct: 141 DTARLVAALD-GSSPVDLDEAAQRH 164


>gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis
           CGDNIH1]
          Length = 225

 Score = 38.9 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 18/140 (12%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448
           S  F   T   D      I    +     D  +       +D      +++T  +  T E
Sbjct: 4   SVLFDTETTGFDPLTGDRILEIAALELFNDLPTGNTFHTLVDPCRDVPEEATRVHGFTAE 63

Query: 449 ILSYLKKFFEN---------EHFLKIGHNIKYDKLVL----HRYG---ISMRGFEDIMLM 492
           +L   K  F +              I HN  +D   L     R G   +      D ++M
Sbjct: 64  MLRG-KPLFADIVEDLLAFFGRDPLIAHNAPFDFNFLNAEFARLGKPKLDPARMIDTLVM 122

Query: 493 SYVLDSGRSSHDIASIAQKW 512
           +     G   + + ++ +++
Sbjct: 123 AKARFPGM-PNSLDALCRRF 141


>gi|229604946|ref|YP_002875646.1| putative exonuclease [Vibrio phage VP93]
 gi|227976991|gb|ACP44093.1| putative exonuclease [Vibrio phage VP93]
          Length = 316

 Score = 38.9 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 95/264 (35%), Gaps = 38/264 (14%)

Query: 5   NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64
             + ++DG  ++Y+A       +     LP  AI  F ++   +LQ     +  +     
Sbjct: 22  GKVLILDGDFYLYQA-------AATVKTLPT-AIRRFHSL---VLQEMFYSNCQTAEVYC 70

Query: 65  FDYPAVTFRNEIYPD---YKANRP---KIP--EMLLPQLPLVRLATQAFGIPAIEIQGFE 116
            D  +      +YP    Y+ANR    K P  +ML   +  ++L     GI  I     E
Sbjct: 71  TDSNSPKCLRPLYPTFKPYQANRKGKQKPPLLDMLKQAVQGMKLNEHPDGISVIWAFEEE 130

Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG--- 173
           ADD++          G    I S DKDL    +P       +  E  +    +K +    
Sbjct: 131 ADDLMIQRGEELYPNG---LISSGDKDLRMTRAPYWEQKLAITSEIENRFGYVKWYEGEN 187

Query: 174 --IPPEKMVCLQA--LTGDSIDNIPGIPG-----IGYKTAAL----LLQEYGNLENILIN 220
             +         A  L GDS DNI GI        G   A      L+    + E ++ N
Sbjct: 188 MPLKGHGTAFFWAQMLMGDSADNIRGIDRLDGKLCGPTKAYEFLTDLITGSPDDETVVAN 247

Query: 221 ASRIKQKKRRENILEYAETARLSR 244
               K    R++ L  AE   L R
Sbjct: 248 TIIGKYAAARQDPLAEAEMLWLRR 271


>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1358

 Score = 38.9 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 11/142 (7%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAIS-TLDQKDDTSFKVETIFIDLSVHTSQDS 439
           ++K+E      F + T  +  +  +   I     +D K    +        L      + 
Sbjct: 334 IKKIEEGSFVVFDLETTGLSRYRDRITEIGACKVIDGKICEIYNELVNPEMLIPEKITEI 393

Query: 440 TGKNTLTKE----ILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RYGISMRG-FEDI 489
           TG      E    I   L  F E  +  + +G N  +D   +     R G+     + D 
Sbjct: 394 TGITNQMVESCPKIEEVLPGFLEFCQGSILVGQNTDFDVGFVRENCTRLGLDFNPLYLDT 453

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + M+  L +      +  IA+K
Sbjct: 454 LPMARALFADMKKFSLDKIARK 475


>gi|221194471|ref|ZP_03567528.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
 gi|221185375|gb|EEE17765.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
          Length = 195

 Score = 38.9 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 40/197 (20%)

Query: 2   QKENHLFLVDGSSFIY---RAFYATPLLSRKHDGLPVNAIAG-------FCNMLWKLLQN 51
           +++  L +VDG + ++   R +      + + DGL  +A A        F      L+ +
Sbjct: 4   REDRELLIVDGYNVMHATAR-YEGLIDGANQADGLVSSADAAYHMDGDPFIRAREALISD 62

Query: 52  SRKESIASHFAV-IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAI 110
               +   + AV +FD                  P+ P+     + L+            
Sbjct: 63  VATFAHHRYKAVIVFDGAGNVN------------PERPDRSRAGVKLI-----------F 99

Query: 111 EIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK 170
                 AD +I      A + G +V+++++DKD+      +T  +   +  +I    +++
Sbjct: 100 SKPNQSADTVIEKLVTEAREAGRSVSLVTSDKDV-----RSTVGFGPGEVTRISSAALVR 154

Query: 171 KWGIPPEKMVCLQALTG 187
              +    +  LQ  TG
Sbjct: 155 DVEVSDTAIDDLQRETG 171


>gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 203

 Score = 38.9 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 11/129 (8%)

Query: 392 FKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442
           F + T  +D    +   IA            LD +   +   +     +++    +S  +
Sbjct: 8   FDLETTGLDPTKDQITEIAAIRTDLIREYGRLDIRITKNSGTKLTPEIVNLTGISESMMR 67

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
             + + +   L   F +   + + H+  +D   L RY      F     +S +++S  S+
Sbjct: 68  GGVPEPVAIMLLSCFMSGTIV-VAHHAPFDLAFLARYQFEPDSFVCTRALSKLVESDESA 126

Query: 503 HDIASIAQK 511
             +AS+A++
Sbjct: 127 -SLASVAER 134


>gi|254457641|ref|ZP_05071069.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207086433|gb|EDZ63717.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 231

 Score = 38.9 bits (89), Expect = 5.0,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 25/186 (13%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDD--------TSFKVETIFIDLSVHTSQDSTGKN 443
             + T  ++    +  +I I   +  ++           K+ ++   ++  T++   GK 
Sbjct: 5   LDVETTGLEEID-RVCSIGIVWSEDGENRTIYELVNEGKKIPSLASSINHITNEMLKGKP 63

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSS 502
              +     L     NE    +GHNIK+D  +L + G +  G   D + ++  L S    
Sbjct: 64  KFQESEAYKLLTQHNNEDTTIVGHNIKFDLAMLKKSGFNFIGEIIDTLRVTKHLVSECEQ 123

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             +     ++L Y  K + K  K  +            HA+ ++ +   L+  L      
Sbjct: 124 FSL-----QFLRYELK-LYKEEKELLQ---------AHHALSDATIAKNLYEYLLEIQPK 168

Query: 563 EKLLHV 568
           EKL  +
Sbjct: 169 EKLAKL 174


>gi|148245855|gb|ABQ52890.1| DNA polymerase [uncultured marine microorganism]
          Length = 119

 Score = 38.9 bits (89), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299
             + TD P+   +E+  L+  N   +   L+ LE  K +  +    +    NI
Sbjct: 1   AKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQLQEHFGGNI 53


>gi|288929578|ref|ZP_06423422.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329083|gb|EFC67670.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 900

 Score = 38.9 bits (89), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 24/155 (15%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------STLDQKDDTSF-----KVET 426
           +++    +T     F   T  ++ F    + IA         ++      F      +  
Sbjct: 506 ERFAHCFDTEEIVVFDTETTGLNVFEDDIVQIAAVKMRAGCVVEGAAFNVFIKTERPIPA 565

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RY-- 479
           +  D+      +      L       L+ F +   + + + HN  +D  +L     RY  
Sbjct: 566 MLGDIPNPIVAELQHNTCLP--AAQALQSFMQYVGNSMLLAHNADFDYNILRFNLQRYCP 623

Query: 480 GISMRG----FEDIMLMSYVLDSGRSSHDIASIAQ 510
            I +      + D + +  +L  G   + + ++ +
Sbjct: 624 SIDLHATHPTYFDSLKIIRLLQPGLKQYKLKALLE 658


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score = 38.9 bits (89), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           L       F + T  + A +   I + A+     +    F+        LS         
Sbjct: 413 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDI 489
           + D         E+    + +  +     + HN  +D   L     + G+        D 
Sbjct: 473 TDDMLTDAPEVGEVFKKFESWMGDHTL--VAHNASFDMGFLNVGFKKCGLDKPKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309B]
 gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309A]
          Length = 289

 Score = 38.9 bits (89), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAIS-TLDQKDDTSFK--VETIFIDLSVHTSQDS 439
           + E     +F I T  +D      I I+ +  +D  +   F   V + +I   +      
Sbjct: 2   QTEVKEFIAFDIETTGLDFHQDAVIQISAARYVDGIEVDYFDTLVNSDYIPDEITKLTGI 61

Query: 440 TGKNTLTKEILSYLKKFFENE--HFLKIGHNIK-YDKLVLHRYGISMR---GFEDI 489
           T    L    L  +  +  +     + +GHNIK +D   L   G ++       D 
Sbjct: 62  TNDQVLNAPTLDEVMPYLFDYLGDTILVGHNIKSFDFPFLKAKGYNIAEGHEIYDT 117


>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1464

 Score = 38.9 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 14/153 (9%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVETIFI-DLSVHTSQDSTGKN 443
                 F + T        + I I A+   D K    F         +     Q ++  +
Sbjct: 437 QGSFVVFDLETTGFSPMSCQIIEIGAVRVEDGKIVERFSTFVNPKVPIPFRIEQLTSIND 496

Query: 444 TLTKE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RYGISMR-GFEDIMLMSY 494
           ++  +   I   L KF E     + + HN  +D   +     R GI     + D + M+ 
Sbjct: 497 SMVMDAPVIEEVLPKFLEFCSGAVMVAHNADFDMSFVEFNCDRLGIPHDFTYIDTVGMAR 556

Query: 495 VLDSGRSSHDIASIAQKW---LSYTRKEILKSR 524
            L    +   + ++A+     L +  + +  + 
Sbjct: 557 FLLPSLNRFKLDTVAKALEIPLGHHHRAVDDAA 589


>gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7]
 gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11]
          Length = 237

 Score = 38.9 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 83/247 (33%), Gaps = 32/247 (12%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446
           +        T +      K +  + +  +            F +  V     + G +   
Sbjct: 1   MNLLYLDTETFSEADL--KKVG-SYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPR 57

Query: 447 KEILSYLKKFFENEHFLKIGHN-IKYD-KLVLHRYGISM--RGFEDIMLMSYVLDSGRSS 502
               + LK    + +   +G N + +D  ++ H +G  +      D M++++        
Sbjct: 58  DLRRAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAF-------R 110

Query: 503 H----DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN--SNVILQLWLLL 556
           H     +A++ +         + K ++    I + S    + + I    ++   + W   
Sbjct: 111 HALPGSLAALCEVL--NIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEF 168

Query: 557 --RPKLIVEKLLHVYERL--------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606
               K  +  +  VY+++        +  ++ +   +   G ++D  L +     ++++ 
Sbjct: 169 IAYAKSDITSMREVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHK 228

Query: 607 LSLEENI 613
             L+E  
Sbjct: 229 EELQEEA 235


>gi|160876618|ref|YP_001555934.1| 3'-5' exonuclease [Shewanella baltica OS195]
 gi|160862140|gb|ABX50674.1| 3'-5' exonuclease [Shewanella baltica OS195]
 gi|315268815|gb|ADT95668.1| 3'-5' exonuclease [Shewanella baltica OS678]
          Length = 315

 Score = 38.9 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 20/125 (16%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              + ++V   +    V +L+      F   T    A   + +   +S +      +   
Sbjct: 108 QQIHIEVVQPSEFDAVVARLQAEPVLGFDTETR---ASFERGVQHPLSLIQIATADACY- 163

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISM 483
                            ++ +  E  + LK   E+E+ LK+G  ++ D   L R  GI++
Sbjct: 164 ---------------LFQHAILGEQFTQLKTVLEDENILKVGVGLRSDAQALKRQWGINV 208

Query: 484 RGFED 488
               D
Sbjct: 209 TSKLD 213


>gi|29349740|ref|NP_813243.1| hypothetical protein BT_4332 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569894|ref|ZP_04847303.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384013|ref|ZP_06993574.1| 3'-5' exonuclease domain protein [Bacteroides sp. 1_1_14]
 gi|29341650|gb|AAO79437.1| 3'-5' exonuclease-like protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840275|gb|EES68357.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263617|gb|EFI06480.1| 3'-5' exonuclease domain protein [Bacteroides sp. 1_1_14]
          Length = 216

 Score = 38.9 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF---EDIMLMSYVLDSGRSSHDIAS 507
             L    EN   +K+G ++K D ++LH+       F     I L  YV   G     +  
Sbjct: 87  QPLVDLLENPAVIKVGLSLKDDFMMLHKR----APFTQQSCIELQDYVRQFGIQDKSLQK 142

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
           I   +    +++I KS++ S     +     +++A  ++   L ++ LL+ 
Sbjct: 143 I---YAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQE 190


>gi|307298657|ref|ZP_07578460.1| excinuclease ABC, C subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915822|gb|EFN46206.1| excinuclease ABC, C subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 575

 Score = 38.9 bits (89), Expect = 5.2,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 15/169 (8%)

Query: 62  AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIP-AIEIQGFEADDI 120
            V+FD          Y  Y+ +  + P        +V+       +P  + I G E    
Sbjct: 388 VVVFDNGKPN--KSEYRRYRISELEEPNDFEAMATVVKRRYTKHPLPDLLLIDGGEPQ-- 443

Query: 121 IATYTYIAEKEGFAVT-IISTDKDLMQLVSPTTCLYDTVKEE------KIDIEHVIKKWG 173
           +        + G     I+   K+  +LV         +KEE       I I+    ++ 
Sbjct: 444 LRAVEKAFAEIGIQEYEIVGLAKEFNELVFLDNRDRVKLKEEHPVLRMIISIDDEAHRFA 503

Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222
           I   +++  +      ID+IPG   IG K    L++ +G+++ I   + 
Sbjct: 504 INYHRVLRERRFQSSKIDDIPG---IGPKRKKALMRAFGSVKGIAEASE 549


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
          Length = 1561

 Score = 38.9 bits (89), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 19/153 (12%)

Query: 375 KDIQQWVQ----KLETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IF 428
            D +Q V+    +        F I T       ++ I I A+   D K    F       
Sbjct: 520 DDTKQLVENSRNQSFADTYVVFDIETTGFSPEKNRIIEIGAVKVTDGKITDKFSTFVNPD 579

Query: 429 IDLSVHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDK----LVLHR 478
           + +     + ++  + +         IL    +F  +     + HN  +D         +
Sbjct: 580 VPIPFDIEKLTSINDAMVLPYPKIDVILPQFLEFVGDAAL--VAHNASFDVGFIGHYAEK 637

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510
            G++      D + M+ +L    +   + ++A+
Sbjct: 638 QGLAFNPTVLDTVTMARLLLPNLNRFKLDTVAK 670


>gi|78485443|ref|YP_391368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomicrospira crunogena XCL-2]
 gi|123555534|sp|Q31GM9|MNMA_THICR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78363729|gb|ABB41694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomicrospira crunogena XCL-2]
          Length = 379

 Score = 38.9 bits (89), Expect = 5.2,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 24/175 (13%)

Query: 45  LWKLLQNSRKESIASHF----AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100
           L  +L    K  I  H        +D     F +    +Y++ R   P++L  +    + 
Sbjct: 60  LKDVLAICEKLDIPLHVENFSGEYWD---RVFEH-FLAEYQSGRTPNPDILCNKEVKFKA 115

Query: 101 ATQ-AFGIPAIEIQGFEADDIIAT--YTYIAEKEGFAVTIIST-DKDLMQLVSPTTCLYD 156
             + A  +           D IAT  Y  I+  E     ++   D +  Q     T    
Sbjct: 116 FLEHAMTL---------GADYIATGHYARISRDENGQCYLLKGLDNNKDQSYFLYTLQQH 166

Query: 157 TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211
            + +    I  + K +     ++     L      +  GI  IG +     LQ++
Sbjct: 167 QLSKSMFPIGELEKPY---VRQLAEEADLITHDKKDSTGICFIGERKFKDFLQQF 218


>gi|226941543|ref|YP_002796617.1| excinuclease ABC subunit C [Laribacter hongkongensis HLHK9]
 gi|226716470|gb|ACO75608.1| UvrABC system protein C [Laribacter hongkongensis HLHK9]
          Length = 606

 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179
           I+      A K G    ++  ++  +QL +    L+         +     ++ I   + 
Sbjct: 490 IVGVAKGEARKPGLETLVLVREQKTLQLPADHPALHLIQ-----TVRDEAHRFAITGHRA 544

Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
              +A T  +++ IPG+   G K    LL  +G L+ +  
Sbjct: 545 RRAKARTTSTLEEIPGV---GPKRRQRLLTRFGGLKGLAA 581


>gi|195118443|ref|XP_002003746.1| GI21363 [Drosophila mojavensis]
 gi|193914321|gb|EDW13188.1| GI21363 [Drosophila mojavensis]
          Length = 7182

 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 91/247 (36%), Gaps = 13/247 (5%)

Query: 513  LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
            L   R+++ +  K    ++ I        A+ ++   L+    L+ ++  E    +  R 
Sbjct: 2211 LQENREKLDQILKQHPNLNNIDQIIADLVALNDA---LKYQADLKDRIHDEG--SLLMRE 2265

Query: 573  DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS---LEENIYDLSGEKFNLSSPKQL 629
            D   +  + +  +    +D++    +  EI+  +     + + + + +  K   S   + 
Sbjct: 2266 DIASMPAIQESLLV---LDKNY-DSLQNEIAHRIQKYNLISQALREYAESKDKFSKELKK 2321

Query: 630  GDILFTKLKFPSGAKTKTGQWKT-TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688
             + LF  +    G +T   Q    T + +EQ+      + +       ++K+ +   + +
Sbjct: 2322 AEDLFNAIPQQPGDETALHQASEKTRKTMEQLRKSKMNLDELERRGNNVAKLFTAIGEPV 2381

Query: 689  PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748
            P  + +        +      T + A +      I  + +  +K    ++S   + L  A
Sbjct: 2382 PQEVQQEVAAAKQQWQNLHDKTAKNAHVYETEAVIWSQIEDAKKDLLPWLSETNQGLCDA 2441

Query: 749  DYSQIEL 755
              + IE+
Sbjct: 2442 ADNSIEI 2448


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           L       F + T  + A +   I + A+     +    F+        LS         
Sbjct: 413 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDI 489
           + D         E+    + +  +     + HN  +D   L     + G+        D 
Sbjct: 473 TDDMLTDAPEVGEVFKKFESWMGDHTL--VAHNASFDMGFLNVGFKKCGLDKPKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|46107628|ref|XP_380873.1| hypothetical protein FG00697.1 [Gibberella zeae PH-1]
          Length = 1034

 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 92/255 (36%), Gaps = 24/255 (9%)

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQ--------EHAIENSNVILQLWLLLRPKLIVEK 564
           L+   ++ L  R  +  I  IS +++         E+A    N+  +    + P +  + 
Sbjct: 222 LTRLLQDSLGGRTKTCIIATISPAKINLEETISTLEYAFRAKNI--KNKPQMNPMIEKKT 279

Query: 565 LLHVYE-RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623
           LL  +   +++   ++++  +  G+ +  +  ++++A+     +  EE    L   + NL
Sbjct: 280 LLKDFTMEIERLKSELIATRQRNGVYLSNESYEEMTAQSESRRIVNEEQSAKLDTLEKNL 339

Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683
               ++ ++   +  F    K   G         E ++  +  +        + +KI+  
Sbjct: 340 --RNKVQELFSLQSTFLGLKKDHEGTRAQLDDTKEVLDQTEIVLSATRQSLSEETKIRKA 397

Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743
           +  +         + +         +   ++ +         K+DL    R  + +   +
Sbjct: 398 HQKTEQKLTEVGGELI-------DKLHKTVSDVGGLHAKNRRKSDLQSINRNTWTTSQNQ 450

Query: 744 KLISADYSQI-ELRI 757
               AD + + E RI
Sbjct: 451 V---ADVTSMVERRI 462


>gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 25/100 (25%)

Query: 462 FLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
            L + HN  +D+  L     R GI+        + +S  L  G   H + ++ ++     
Sbjct: 93  KLFVAHNASFDRGFLRSEFRRAGIAFDPDVLCTVRLSRALFPGEKRHGLDALVERH---- 148

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
                    + +P D+         A+ ++++I Q W  L
Sbjct: 149 ---------ALVPSDR-------HRALADADLIWQFWQRL 172


>gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
 gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
          Length = 212

 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 22/167 (13%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQK------DDTSFKVETIFIDLSVHTSQDST 440
               +    T   +   +   +I +  ++        +      E  F   ++       
Sbjct: 5   PPLLAIDFETA--NEQRASACSIGLCRVENGRVVRTAEYLIRPPELRFTPFTIAIHGIRP 62

Query: 441 GKNTLTKE---ILSYLKKFFENEHFLKIGHNIKYDKLVLHR----YGISM--RGFEDIML 491
                  E   I   ++   E    L   HN  +D  VL      YG+++   G+   ++
Sbjct: 63  EDVVDAPEFPDIWDAMRPELEGAVLL--AHNASFDMSVLRAMLGTYGLAVPDHGYLCTLV 120

Query: 492 MSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISD 535
            +         H +  +A+++   L + R        ++I +  ++D
Sbjct: 121 AARRAWPDLEKHRLNHLARQFGIELEHHRAGSDARACAAIALRAMAD 167


>gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 231

 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 61/205 (29%), Gaps = 39/205 (19%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG------KNTL 445
           F   T  ++    + I I    L  K  T                 ++        +  L
Sbjct: 6   FDTETTGLERLEDRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAVHGISNEQLL 65

Query: 446 TK----EILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSY 494
            K    E+L    +FF+      + HN  +D       L R G   I      D + ++ 
Sbjct: 66  DKPTFAEVLDEFLEFFDGAKL--VAHNAMFDLGFINAELARLGQAEIQSERIIDTLALAR 123

Query: 495 VLDSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPIDKISDS 536
                   + + ++ +++                  L+    E++  +++++ +      
Sbjct: 124 RKHP-MGPNSLDALCKRYGIENGHRTLHGALLDSEILAEVYIELIGGKQTALGLSMGGAV 182

Query: 537 QVQEHAIENSNVILQLWLL-LRPKL 560
                    + ++L      L P++
Sbjct: 183 SGNNAGESGAAIVLAARPRPLAPRI 207


>gi|118394980|ref|XP_001029847.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89284120|gb|EAR82184.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1070

 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 68/198 (34%), Gaps = 15/198 (7%)

Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
            E    ++     K +A++ +I + +  + +Q    ++ T+K + +Q  +++  ++    
Sbjct: 757 TEKYDCEVFNMSCKSLALQKKIFKQSVKQNNQKHQKNNLTAKSDEKQYKEQILQDKYIFK 816

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
                  D    +   + I + ++ L+        +        H + I I+     Q  
Sbjct: 817 QAQIDLKDRIKIVDTIQSIDEALRILQQQSYLGVDLEGSLSKHGHIELIQISYHDFIQNH 876

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
                       + V    +   +  +       +K+  E++  +KI    + D L L+ 
Sbjct: 877 SF----------IYVFDFVEMEKQQEVFILAKKAIKQIMEDKSIIKILQGCQKDALALYH 926

Query: 479 Y---GISMRGFEDIMLMS 493
                I + G  D  +  
Sbjct: 927 LFSTQI-INGL-DTQVAH 942


>gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
 gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 239

 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 20/138 (14%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               T  +D     + + I           + +    +I+      Q++   + L+ + L
Sbjct: 6   LDTETTGLDPLRGDRLVEIG-CVEMFNRMPTGQTFHRYINPERDMPQEAFAVHGLSSDFL 64

Query: 451 SYLKKFFE---NEHFLKIG------HNIKYDKLV-------LHRYGISMRGFEDIMLMSY 494
           +  K  F    +E    IG      HN  +D          L R  I      D +L++ 
Sbjct: 65  AD-KPLFAHVVDEFLEFIGDAPLVIHNASFDISFINAELDRLKRQAIGRDRLVDTLLLAR 123

Query: 495 VLDSGRSSHDIASIAQKW 512
               G S+  +  +  ++
Sbjct: 124 RKHPGVSNR-LDDLCSRY 140


>gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 423

 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 25/100 (25%)

Query: 462 FLKIGHNIKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
            L + HN  +D+  L     R GIS        + +S  L      H + ++ ++     
Sbjct: 132 KLFVAHNASFDRGFLRGEFRRAGISFDPDVLCTVRLSRALFPSEKRHGLDALVERH---- 187

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
                    S +P D+         A+ ++++I Q W  L
Sbjct: 188 ---------SLVPSDR-------HRALADADLIWQFWQRL 211


>gi|27379246|ref|NP_770775.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
 gi|27352397|dbj|BAC49400.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 12/153 (7%)

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY---LKKFFE---NEHFLKIGHNIKYD 472
           DT F  ET +  L +   Q ++ +  +  + L+    LK FFE   NE  LK+ H  + D
Sbjct: 26  DTEFLRETTYYPL-LCVVQMASPEEAIVIDTLAVGIDLKPFFELMGNEAVLKVFHAARQD 84

Query: 473 K-LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531
             ++ H+  I      D  + + VL  G S      + +K   +      K+ + +    
Sbjct: 85  IEIIWHQANIIPHPVFDTQVAAMVLGYGDSI-AYDQLVEKVTGHRPD---KTHRFTDWSR 140

Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
           +    +   +A+ +   +  ++  L   L   +
Sbjct: 141 RPLTKEQMHYAVSDVTHLRDVFAALDADLKKRR 173


>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
 gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
          Length = 1367

 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           L+      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 422 LQDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 479

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGISM--RGFE 487
               D    +     +L   K++  ++  + + HN  +D         + G+        
Sbjct: 480 GITDDMVKGSDPIDVVLKRFKEWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAENAVV 537

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 538 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 591


>gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
           SR1/5]
          Length = 1129

 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI---DLSVHTSQDSTGKNTLT 446
             F I T    A   + I I  +   +K   + +  T       +     Q ++  +++ 
Sbjct: 103 VVFDIETTGFSALTCRIIEIG-AVKVEKGQITDRFSTFVNPEVPIPFRIEQLTSINDSMV 161

Query: 447 KE---ILSYLKKFFE-NEHFLKIGHNIKYDKLVL----HRYGISMR-GFEDIMLMSYVLD 497
            +   I   L KF E  E  + + HN  +D   +     R GIS    + D + M+  L 
Sbjct: 162 LDAPVIEEVLPKFLEFCEGCVMVAHNADFDMSFIIENCKRQGISDDFTYVDTVGMARFLL 221

Query: 498 SGRSSHDIASIAQ 510
              +   + ++A+
Sbjct: 222 PALNRFKLDTVAK 234


>gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
 gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
          Length = 234

 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 34/172 (19%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL- 450
           F   T  ++    + I I    L  +  T                 D+   + ++ E L 
Sbjct: 6   FDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQLL 65

Query: 451 ------SYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSYVL 496
                   L +F E  +    + HN  +D       L R     I+     D + ++   
Sbjct: 66  DKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEIASEHIVDTLALARRK 125

Query: 497 DSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPI 530
                 + + ++ +++                  L+    E++  +++++ +
Sbjct: 126 HP-MGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIGGKQTALGL 176


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 16/142 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSV------HT 435
           L       F + T  + A +   I + A+     +    F+        LS         
Sbjct: 413 LADETYVVFDVETTGLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGI 472

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGIS--MRGFEDI 489
           + D         E+    + +  +     + HN  +D   L     + G+        D 
Sbjct: 473 TDDMLTDAPEVGEVFKKFESWMGDHTL--VAHNASFDMGFLNVGFKKCGLDKPKNPVIDT 530

Query: 490 MLMSYVLDSGRSSHDIASIAQK 511
           + ++  L     +H + ++ +K
Sbjct: 531 LELARFLFPEMKNHRLNTMCKK 552


>gi|212721724|ref|NP_001131769.1| hypothetical protein LOC100193139 [Zea mays]
 gi|194692488|gb|ACF80328.1| unknown [Zea mays]
          Length = 303

 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 90/286 (31%), Gaps = 44/286 (15%)

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
           +  DAA  E    +         A    +   T+   S    L    + ++S  TP    
Sbjct: 27  HWDDAAEAELQAFEAAYASASASAKRRRLPDWTSPSPSPSYHLHRSQNPVSSGSTPSWTL 86

Query: 352 LERLQK------LSQYPINNDSYTKIVNTKDIQQ------WVQKLETIGSAS--FKIITD 397
                +        Q   +         T+  +        +++++T G  S  F +   
Sbjct: 87  TPHTPQDNVRARRQQISFSGKIVYCRTPTEAEKAATDILLKIERMKTPGQVSLGFDLEWR 146

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
                   P  +A+  L  +    + +      +                     LK   
Sbjct: 147 PFPRRGEPPCKVAVMQLCMEKTLCYVLHIAHSGVPP------------------ILKTLL 188

Query: 458 ENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLD---SGRSSHDIASIAQKWL 513
           E+   +K+G  I  D + +L+ Y + ++   D   +S + +   +      +AS+ +   
Sbjct: 189 EDSSSIKVGICIDNDARKMLNDYNVCVQPLMD---LSTLANVKLASPKRWSLASLTE--- 242

Query: 514 SYTRKEILKSR--KSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             T KE+ K    +       +   Q  ++A  ++ +   L+  L+
Sbjct: 243 MITCKELPKPSNIRMGNWEADVLSKQQLQYAATDAYISWYLYEALQ 288


>gi|295394778|ref|ZP_06804993.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972374|gb|EFG48234.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030]
          Length = 385

 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 11/187 (5%)

Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF--IDLSVHTSQDSTGKNTLTKEILSY 452
           +TD+ +A H+    +A        DT       +      V   ++  G   +  E L  
Sbjct: 12  VTDSPEALHTVATQLAHGHGPVGIDTERASGIRYGNRAFLVQLKREGAGIVLIDSEALPV 71

Query: 453 LKKF-FENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           L            I H    D   L   G+      D  L + +L+       +AS+ ++
Sbjct: 72  LSSVNAALHGVEWILHAATQDLGCLAEKGMRPDALFDTELAARLLN--FERFGLASLTEE 129

Query: 512 WLSYTRKEILKSRKSSIPIDKISD-SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570
            +  T    L    S++         +   +A  +  V+  L   L  +L  +     Y 
Sbjct: 130 IMGVT----LAKEHSAVDWSTRPLPHEWLAYAALDVEVLNHLRTELADRLHAQGKWE-YA 184

Query: 571 RLDKPMI 577
           R +   +
Sbjct: 185 RQEFDHL 191


>gi|225570650|ref|ZP_03779673.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM
           15053]
 gi|225160477|gb|EEG73096.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM
           15053]
          Length = 879

 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE---HAIENSNVILQLWLLLRPKLI 561
           I ++  K L     E+ K    +  + K S  ++ E   H +  +  +      L+ KL 
Sbjct: 697 IEALTSKGLLDYYDELEKRLAEAAKLVKASPDKLAEKITHLLAENKTLHSEVESLKSKLA 756

Query: 562 VEKLLHVYERL-DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620
            + +  V +++ +   + +++  E+ G  +D + L+ +  ++   L      I   +G K
Sbjct: 757 QDAMGDVMDQVTEVKGVKLLA-TEVEG--VDMNGLRDLGDQLKDKLGEGVIVIASAAGGK 813

Query: 621 FNL 623
            NL
Sbjct: 814 VNL 816


>gi|108798353|ref|YP_638550.1| signal transduction histidine kinase [Mycobacterium sp. MCS]
 gi|119867450|ref|YP_937402.1| signal transduction histidine kinase [Mycobacterium sp. KMS]
 gi|108768772|gb|ABG07494.1| signal transduction histidine kinase [Mycobacterium sp. MCS]
 gi|119693539|gb|ABL90612.1| signal transduction histidine kinase [Mycobacterium sp. KMS]
          Length = 496

 Score = 38.5 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           +  +   +     + S  ++IR I+ R   N  +Q  AA +  +A  + +    +  + +
Sbjct: 273 IRDVTEVKRRDRALLSKDATIREIHHRVKNN--LQTVAALLRLQARRTNNAEGREALMES 330

Query: 919 --KM--LLQIHDELVFEVPEE-EITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
             ++  + Q+HD L   V EE  +      I+  M         +R+  + ++ V
Sbjct: 331 VRRVSSIAQVHDALSMSVDEEVNLDEVVDRILPIMNDVASVGPPIRIKREGDLGV 385


>gi|325924432|ref|ZP_08185961.1| ribonuclease D [Xanthomonas gardneri ATCC 19865]
 gi|325545080|gb|EGD16405.1| ribonuclease D [Xanthomonas gardneri ATCC 19865]
          Length = 364

 Score = 38.5 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 65/181 (35%), Gaps = 11/181 (6%)

Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461
             ++P  I + T   ++ T +    +   + +   ++    + L   + + L ++     
Sbjct: 16  HAARPSRIGLDTEFIRERTYWPQLAL---VQMAIGEEILLIDPLIPGMNAALGEWLTATD 72

Query: 462 FLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
            +K+ H+   D +      G+  R   D  + +       +        QK +      +
Sbjct: 73  IVKVMHSASEDLVTFKCACGVLPRPLFDTQIAA-----ALAGVGGGMGYQKLVQEVTGTL 127

Query: 521 LKSRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMID 578
           L   ++     +   S  Q E+A ++   +  +   L  +L   ++L  + E  ++ +  
Sbjct: 128 LTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELSRRLTEQDRLGWLAEDAERLLAT 187

Query: 579 V 579
           V
Sbjct: 188 V 188


>gi|292899665|ref|YP_003539034.1| ribonuclease D [Erwinia amylovora ATCC 49946]
 gi|291199513|emb|CBJ46630.1| ribonuclease D [Erwinia amylovora ATCC 49946]
          Length = 373

 Score = 38.5 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 61/203 (30%), Gaps = 29/203 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +YT I     + +  Q+   + + +          ++ +   I +   +          T
Sbjct: 2   NYTMITTNAALCEVCQRARQVPALALDTEFVRTRTYYPRLGLIQLYDGETICLIDPLPIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISMRG 485
            +                         +    ++  +K  H    D  V  H +G+  + 
Sbjct: 62  DWTP----------------------FRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQP 99

Query: 486 FEDIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    SGR  S   A+I + +       + KS   +  + +    +   +A  
Sbjct: 100 MIDTQILA--AFSGRPLSCGFATIVESFTGIV---LDKSESRTDWLARPLSEKQCRYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEKLLH 567
           +   +L +   L  +      + 
Sbjct: 155 DVFYLLPIAEKLVAETEAAGQMA 177


>gi|262273269|ref|ZP_06051084.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262222642|gb|EEY73952.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 207

 Score = 38.5 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS------ 439
                +    T ++D   ++ + IA + +      +    T+ +      ++ S      
Sbjct: 27  NEEMVALDCETTSLDPHKAELVTIAATKIRGNTIVTSDPLTLSLRAPHSLTEQSVKIHGI 86

Query: 440 ----TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479
                      KE +  L +F  N     +G+ I YDK +L RY
Sbjct: 87  RHQDLHDGVTEKEAMQALIEFAGN--RPIVGYYIHYDKTILDRY 128


>gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1417

 Score = 38.5 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 32/193 (16%)

Query: 388 GSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSFKVET-IFIDLSVHTSQDSTGKNTL 445
               F   T  +D        I A+   + +    F         ++   ++ +   N +
Sbjct: 396 EFCVFDTETTGLDPGVEYLTEIGAVIIRNGEVVEEFDTFVKPGKPITPKITELTGITNEM 455

Query: 446 TKEI---LSYLKKFFE-NEHFLKIGHNIK-YDKLVL----HRYGISMRG-FEDIMLMSYV 495
             +       L+ F       + +GHN+  +D   L     R GI +   + D + M+  
Sbjct: 456 VADAPSEKEALEAFLAFAGDRILVGHNVHAFDMRFLRAAAKRSGIKLEPTYIDTLTMAQT 515

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           +  G  ++   +I  K L     E                      A E+S  + +++ +
Sbjct: 516 MYPGLHNYKQGTI-NKHLELPAYE-------------------AHRACEDSAALGRIFCV 555

Query: 556 LRPKLIVEKLLHV 568
           +   L  +++  V
Sbjct: 556 MLNDLAEKEVTKV 568


>gi|288549752|ref|ZP_05968046.2| ribonuclease D [Enterobacter cancerogenus ATCC 35316]
 gi|288317705|gb|EFC56643.1| ribonuclease D [Enterobacter cancerogenus ATCC 35316]
          Length = 384

 Score = 38.5 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 57/194 (29%), Gaps = 27/194 (13%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I    ++    +      + +          ++ +   I +    +         T
Sbjct: 11  NYQMITTNDELASLCEVTRDFPAIALDTEFVRTRTYYPQLGLIQMYDGKRVSLIDPLGIT 70

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRG 485
            +  +                      +    +    K  H    D  V    +GI  + 
Sbjct: 71  DWTPM----------------------RDLLLDTAVTKYLHAGSEDLEVFLNTFGIMPQP 108

Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D  +++   +    S   A++ +++   T   + KS   +  + +   ++  E+A  +
Sbjct: 109 LIDTQILAAFSN-RPLSWGFAAMVEEYTGLT---LDKSESRTDWLARPLTARQLEYAAAD 164

Query: 546 SNVILQLWLLLRPK 559
              +L +   L  +
Sbjct: 165 VFYLLPIAGQLMKE 178


>gi|126434018|ref|YP_001069709.1| signal transduction histidine kinase [Mycobacterium sp. JLS]
 gi|126233818|gb|ABN97218.1| signal transduction histidine kinase [Mycobacterium sp. JLS]
          Length = 496

 Score = 38.5 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918
           +  +   +     + S  ++IR I+ R   N  +Q  AA +  +A  + +    +  + +
Sbjct: 273 IRDVTEVKRRDRALLSKDATIREIHHRVKNN--LQTVAALLRLQARRTNNAEGREALMES 330

Query: 919 --KM--LLQIHDELVFEVPEE-EITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968
             ++  + Q+HD L   V EE  +      I+  M         +R+  + ++ V
Sbjct: 331 VRRVSSIAQVHDALSMSVDEEVNLDEVVDRILPIMNDVASVGPPIRIKREGDLGV 385


>gi|148547004|ref|YP_001267106.1| excinuclease ABC subunit C [Pseudomonas putida F1]
 gi|189038076|sp|A5W1B2|UVRC_PSEP1 RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|148511062|gb|ABQ77922.1| Excinuclease ABC subunit C [Pseudomonas putida F1]
          Length = 607

 Score = 38.5 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 23/168 (13%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131
           Y   K    K+P++L       QL + R   QA         GF    ++     +  K 
Sbjct: 449 YGRIKDGEGKLPDVLLVDGGKGQLNMARDVMQAL--------GFTDLTLLGVAKGVTRKA 500

Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191
           GF    ++       L   ++ L+    ++  D  H   ++ I   +    +A     + 
Sbjct: 501 GFETLYLNDVHHEFTLKGDSSALHLI--QQIRDEAH---RFAITGHRARRGKA---RRVS 552

Query: 192 NIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
           ++  + G+G K    LL+ +G L+ +   +   I K     + + E  
Sbjct: 553 SLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAESI 600


>gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC
           23457]
 gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 234

 Score = 38.5 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 34/172 (19%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL- 450
           F   T  ++    + I I    L  +  T                 D+   + ++ E L 
Sbjct: 6   FDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQLL 65

Query: 451 ------SYLKKFFE-NEHFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSYVL 496
                   L +F E  +    + HN  +D       L R     I+     D + ++   
Sbjct: 66  DKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRK 125

Query: 497 DSGRSSHDIASIAQKW------------------LSYTRKEILKSRKSSIPI 530
                 + + ++ +++                  L+    E++  +++++ +
Sbjct: 126 HP-IGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIGGKQTALGL 176


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score = 38.5 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 106/331 (32%), Gaps = 37/331 (11%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--DTSFKVETIFIDLSV------HT 435
           LE      F + T  + A +   I +A   +   +  D   +       LS         
Sbjct: 416 LEEDTYIVFDVETTGLSAVYDTIIELAAVKIRGGEIIDKFERFANPHHPLSATTIELTGI 475

Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-------RGFED 488
           + D         +++   +++ +++  + + HN  +D   L+     +           D
Sbjct: 476 TDDMVRDAPDVIDVVRDFREWIDDD--ILVAHNASFDMGFLNVAYKRLLKVEKAQNPVID 533

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
            + +   L     +H + ++ +K+      + R          + +  + D+        
Sbjct: 534 TLELGRFLYPEFKNHRLNTLCKKFDIELTQHHRAIYDAEATGYLLLKMLKDA-------- 585

Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA-EIS 603
            +   +Q    L   +      + Y+R  +P    +  +  TG++ +   L  +S     
Sbjct: 586 -AEKDIQYHDQLNENM---GQSNAYQRS-RPYHATLLAVNDTGLK-NLFKLVSMSHIHYF 639

Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663
             +  +  +  +   E   + S    G++ F  +   S  + +         +++     
Sbjct: 640 YRVPRIPRSQLEKYREGLLIGSACDRGEV-FEGMMQKSPEEVEDIASFYDYLEVQPPEVY 698

Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINK 694
            + +   ++   +  K   T    L   ++K
Sbjct: 699 RHLLQLELVRDEKALKEIITNITKLGEKLDK 729


>gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099]
 gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099]
          Length = 240

 Score = 38.5 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 34/206 (16%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D+   + I +    L  +  T                +++   + ++   L+
Sbjct: 6   FDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHEEAQAVHGISAADLA 65

Query: 452 ---YLKKFFEN-----EHFLKIGHNIKYDKLVLH----RYG---ISMRGFEDIMLMSY-- 494
                 +  E      +    + HN  +D   L+    R G   +      D + ++   
Sbjct: 66  GKPTFAEIAEEWLTFTDGAKLVAHNATFDIGFLNVEFGRLGHPVVDPGRVVDTLALARRK 125

Query: 495 ------VLDSGRSSHDIAS---------IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539
                  LD+    + I +         +  + L+    E++  +++++ +D  + +  Q
Sbjct: 126 HPMGPNSLDALCRRYGIDNTKRTKHGALLDSELLAEVYIELIGGKQAALILDS-ATAPAQ 184

Query: 540 EHAIENSNVILQLWLL-LRPKLIVEK 564
              + +  +I+      L P+L   +
Sbjct: 185 GENVRHIEIIVAERPRPLLPRLTEAE 210


>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
 gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
 gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           innocua FSL S4-378]
          Length = 1444

 Score = 38.5 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS------- 436
           LE      F + T  + A +     I ++ +  K+         FID     S       
Sbjct: 423 LEDATYCVFDVETTGLSAVYDTI--IELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT 480

Query: 437 ---QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK----LVLHRYGIS--MRGFE 487
               D    +     +L   +++  ++  + + HN  +D         + G+        
Sbjct: 481 GITDDMVKGSDPIDVVLKQFREWSGDD--ILVAHNASFDMGFINTAYEKVGLEKAKNAVV 538

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQ 537
           D + ++  L     +H + ++ +K+      + R        + +    I D++
Sbjct: 539 DTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAK 592


>gi|327194287|gb|EGE61150.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 381

 Score = 38.5 bits (88), Expect = 6.1,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 27/216 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T D+    ++L      +          F  +   I ++        S  +E +   
Sbjct: 2   IETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMA--------SPTLEVLVDP 53

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDI 489
           L+                 L+   +   +   LK+ H  + D  ++   G +      D 
Sbjct: 54  LAKGID-------------LAPFFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDT 100

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + + V   G S      +  +  +    +   SR +      +SD Q+ E+A+ +   +
Sbjct: 101 QVAAMVCGFGDSV-SYDQLVSRIKNVHIDKS--SRFTDWSRRPLSDKQL-EYALADVTHL 156

Query: 550 LQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQME 584
             ++L L+ +L  E     + E ++         M 
Sbjct: 157 RDVYLSLKAELDREGRTSWLTEEMNILEARETYDMH 192


>gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 1417

 Score = 38.5 bits (88), Expect = 6.1,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 32/193 (16%)

Query: 388 GSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445
               F   T  +D    +   I   I    +  +           ++   ++ +   N +
Sbjct: 396 EFCVFDTETTGLDPGVEYMTEIGAVIVKNGEVVEEFDTFVKPGKPITPKITELTGITNEM 455

Query: 446 TKEI---LSYLKKFFE-NEHFLKIGHNIK-YDKLVL----HRYGISMRG-FEDIMLMSYV 495
             +       L+ F +     + +GHN+  +D   L     R GI +   + D + M+  
Sbjct: 456 VADAPGEKEALEAFLKFAGDRILVGHNVHAFDMRFLRAAAKRSGIKLEPTYIDTLTMAQA 515

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           +  G  ++   +I  K L     E                      A E+S  + +++ +
Sbjct: 516 MYPGLHNYKQGTI-NKHLELPAYE-------------------AHRACEDSAALGRIFGV 555

Query: 556 LRPKLIVEKLLHV 568
           +   L  +++  V
Sbjct: 556 MLNDLKEKQVAKV 568


>gi|238801845|ref|YP_002922895.1| putative exodeoxyribonuclease [Enterobacteria phage WV8]
 gi|216263058|gb|ACJ71926.1| putative exodeoxyribonuclease [Enterobacteria phage WV8]
          Length = 348

 Score = 38.5 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 57/167 (34%), Gaps = 24/167 (14%)

Query: 79  DYKANRPK--IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVT 136
            Y+ NR     P  L+      R    +     +   GFEAD I+      AEK G    
Sbjct: 135 QYQGNRKDAVTPTHLVA----CREYLLSRPEFKLLKGGFEADSIV---IAKAEKMGKKAA 187

Query: 137 IISTDKDLMQLVSPTTCLYDTVKEEKIDIEH--VIKKWGIPPE-------------KMVC 181
           ++S DKDL Q            K   I I    V   W  P +             K +C
Sbjct: 188 LMSIDKDLRQAEGTYCIDMTYEKSPLIFIADNNVGDIWDCPIKSKPKAAKTVGVGFKFLC 247

Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228
            QA+ GD+ DN  G+ G G       L      +  L     +  KK
Sbjct: 248 YQAVAGDNADNYFGLKGAGKVAVMNALDGKETYKECLDAIYELYAKK 294


>gi|270283861|ref|ZP_06193723.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093]
 gi|270277581|gb|EFA23435.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093]
          Length = 262

 Score = 38.5 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520
               I H+   D       GI      D  L + +L  G     +A + +++L  T   +
Sbjct: 91  DAEFILHDSAQDLPGFADLGIRPHALFDTELAARLL--GLERFGLAYVTERYLGLT---L 145

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
            K   ++    +      + +A  +  ++++L   +   L    
Sbjct: 146 AKEHSAADWSHRPLPRDWRNYAALDVELLIELREAMMRDLKAAG 189


>gi|307204165|gb|EFN83006.1| Exonuclease 3'-5' domain-like-containing protein 2 [Harpegnathos
           saltator]
          Length = 643

 Score = 38.5 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 451 SYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFED--IMLMSYVLDSGRSSHDIAS 507
             LK+   N+  LK+G     D + +L  +G  + G  D   +  S  L S +S   +A+
Sbjct: 153 DKLKELLSNKRILKVGVASFEDGQKILKDHGCQVSGTLDIRTLAESIQLPSLKS---LAA 209

Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV---ILQLWLLLRPKLIVEK 564
           ++ ++L     +I++ R        ++D QV  +A  ++     I Q    ++ K+I   
Sbjct: 210 MSLEYLGLEMDKIIELRCGDWEASTLTDEQVT-YAACDAIASIFIYQKVKQMQSKIIFFS 268

Query: 565 LLHVYERLDKPMIDVVSQMEIT 586
            +  Y  +    + ++ +M   
Sbjct: 269 FICTYIIIANLFLQIMQKMRKA 290


>gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 229

 Score = 38.5 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 16/136 (11%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I I    L     T   +             D+   + +T E L 
Sbjct: 6   FDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLK 65

Query: 452 YLKKFFENE--------HFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSYVL 496
             K F E              I HN  +D         R G   I      D + M+   
Sbjct: 66  DKKAFAEVAEEILAFFGDAKWIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARRK 125

Query: 497 DSGRSSHDIASIAQKW 512
                 + + ++ +++
Sbjct: 126 HP-MGPNSLDALCRRY 140


>gi|145494336|ref|XP_001433162.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400279|emb|CAK65765.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1187

 Score = 38.5 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 122/368 (33%), Gaps = 46/368 (12%)

Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY-LKKFFENEHFLK----IG 466
                 D+ +  +   F       S D         + + Y L +  E     K    I 
Sbjct: 530 YNASSPDELALLMGAKFCGFEYIGSDDGMQIVKYKDQSIKYKLLQVLEFSSARKRMSVIV 589

Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526
            + + D+++L   G       D M++  +  S R + ++ SI ++ L    ++  +    
Sbjct: 590 QD-QNDQIMLLCKG------ADSMIIHLLDKSNRQNQELLSITEQHL----EQYAEKGLR 638

Query: 527 SIPIDK--ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584
           ++ + +  ++ SQ  E   +     LQ           E LLH+ ++++      +  + 
Sbjct: 639 TLLLAQKNLTQSQYDEWISKYMQAGLQTVNR------DELLLHLQDQIENN----LVLIG 688

Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFP 640
            TGI+   D L+       + +L+    I+ L+G+K     N+S    L +    K+   
Sbjct: 689 GTGIE---DKLQDDVGNTMQKILNAGIKIWVLTGDKLETAINISYACNLLNDSQQKIVIQ 745

Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700
           +  + +         +L +     +PI   I+    L  +   Y   L     +    + 
Sbjct: 746 ADDQFEAQFKINQGLELLKSQFQLHPIA-LIISGDSLINLDEKYLIKLIELAKQCHTVIA 804

Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS----------PPTKKLISADY 750
              S            +     + +    G        +             +   +ADY
Sbjct: 805 CRVSPKQKQELVQLVKDNIYNIVTMAVGDGANDVNMITAANIGIGIKGVEGNQAARAADY 864

Query: 751 SQIELRIL 758
           S  E RIL
Sbjct: 865 SIGEFRIL 872


>gi|323359928|ref|YP_004226324.1| ribonuclease D [Microbacterium testaceum StLB037]
 gi|323276299|dbj|BAJ76444.1| ribonuclease D [Microbacterium testaceum StLB037]
          Length = 398

 Score = 38.5 bits (88), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
           +  T E  S L+    +     + H    D   L   G+      D  L + +L  G   
Sbjct: 59  DPSTIEDFSPLQAALAD--VEWVFHAASQDLPSLRERGLEPPRIFDTELGARLL--GHER 114

Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
             + ++ ++ L  T   + K+  ++    +   +   E+A  +   ++ +  +L  +L  
Sbjct: 115 VGLGAVVEQTLGIT---LAKAHSAADWSTRPLPASWLEYAALDVEHLIDVRDVLVAELEE 171

Query: 563 EKLLHVYERLDKPMIDVV 580
           ++      +  + +++ +
Sbjct: 172 QQKTEFARQEFQAVLERL 189


>gi|262283016|ref|ZP_06060783.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
 gi|262261268|gb|EEY79967.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
          Length = 818

 Score = 38.5 bits (88), Expect = 6.3,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 79/226 (34%), Gaps = 29/226 (12%)

Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL- 445
           +  A   +      +  +K I + I  L+  +      +T   D++ H + +   K    
Sbjct: 1   MKYAIVDLEATGTGS-TAKIIQVGIVILEDGEIK----QTYQTDINPHEALEEHIKQLTG 55

Query: 446 --------TKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RYGISMRGFE-DIML 491
                     +     ++ +E  E  + + HN+K+D  +L       G  +     D + 
Sbjct: 56  LSDQRLSQAPDFSQVAREIYELIEDAVFVAHNVKFDANLLAESLFWEGFDLLSPRVDTVE 115

Query: 492 MSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDS-QVQEHAIENSN 547
           ++ V+      + ++S+ +     L      I  +  +++   KI +  Q     +    
Sbjct: 116 LAQVVFPTYEKYGLSSLCELLEIPLEQAHTAISDAMATALLFLKIQEKIQSLPKPLLERL 175

Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593
           +IL   L+   +L++E           P       ++  GI + + 
Sbjct: 176 LILSNSLIYESRLVLEDCFE-----KMPEGRACDWLDCHGIYLKKQ 216


>gi|190891177|ref|YP_001977719.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|190696456|gb|ACE90541.1| ribonuclease III protein [Rhizobium etli CIAT 652]
          Length = 381

 Score = 38.5 bits (88), Expect = 6.3,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 27/216 (12%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T D+    ++L      +          F  +   I ++        S  +E +   
Sbjct: 2   IETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMA--------SPTLEVLVDP 53

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-ISMRGFEDI 489
           L+                 L+   +   +   LK+ H  + D  ++   G +      D 
Sbjct: 54  LAKGID-------------LAPFFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDT 100

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
            + + V   G S      +  +  +    +   SR +      +SD Q+ E+A+ +   +
Sbjct: 101 QVAAMVCGFGDSV-SYDQLVSRIKNVHIDKS--SRFTDWSRRPLSDKQL-EYALADVTHL 156

Query: 550 LQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQME 584
             ++L L+ +L  E     + E ++         M 
Sbjct: 157 RDVYLSLKAELDREGRTSWLTEEMNILEARETYDMH 192


>gi|153807650|ref|ZP_01960318.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185]
 gi|149130012|gb|EDM21224.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185]
          Length = 214

 Score = 38.5 bits (88), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510
             L    EN   +K+G ++K D ++LH+          I L  YV   G     +  I  
Sbjct: 87  QPLVDLLENPGIIKVGLSLKDDFMMLHKRA-PFNQQSCIELQDYVRQFGIQDKSLQKI-- 143

Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558
            +    +++I KS++ S     +     +++A  ++   L ++ LL+ 
Sbjct: 144 -YAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQE 190


>gi|265762514|ref|ZP_06091082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255122|gb|EEZ26468.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 216

 Score = 38.5 bits (88), Expect = 6.4,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 9/121 (7%)

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDI--ASIAQKW 512
           +  E+   +K+G ++K D ++LH+          I L  YV         I   S+ + +
Sbjct: 91  ELLEDPKVIKVGLSLKDDFMMLHKRA-PFNQQACIELQEYV-----RPFGIQDKSLQKIY 144

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
                ++I KS++ S     +     +++A  ++   L ++ LL  +L       +    
Sbjct: 145 GILFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYHLL-EELKRTGNYELAPEE 203

Query: 573 D 573
           +
Sbjct: 204 E 204


>gi|268316813|ref|YP_003290532.1| excinuclease ABC, C subunit [Rhodothermus marinus DSM 4252]
 gi|262334347|gb|ACY48144.1| excinuclease ABC, C subunit [Rhodothermus marinus DSM 4252]
          Length = 615

 Score = 38.5 bits (88), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 196 IPGIGYKTAALLLQEYGNL----ENILINASRIKQKKRRENILEYAETARLS 243
           IPGIG +T   LLQ +G+     E  L   + +  + R E I ++ + A  S
Sbjct: 563 IPGIGPRTVEKLLQHFGSARRVREADLEALAAVVGRARAERIRQHFDAASTS 614


>gi|15640327|ref|NP_229954.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153822831|ref|ZP_01975498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|153827159|ref|ZP_01979826.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|153831076|ref|ZP_01983743.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|227080513|ref|YP_002809064.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|229524741|ref|ZP_04414146.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|9654711|gb|AAF93473.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519649|gb|EAZ76872.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|148873443|gb|EDL71578.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|149738956|gb|EDM53274.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|227008401|gb|ACP04613.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|227012158|gb|ACP08368.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229338322|gb|EEO03339.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 223

 Score = 38.5 bits (88), Expect = 6.4,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 17/124 (13%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETI 427
            Q+  +        S    T ++D   ++ + IA         I++   +          
Sbjct: 32  YQRLFETARHHEYVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLD 91

Query: 428 FIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVL-----HRYGI 481
              + +H  +     + L+ KE L  L +F  N     +G++I+YDK +L        G 
Sbjct: 92  SGSVRIHRIRHQDLHDGLSEKEALLQLIEFIGN--RPLVGYHIRYDKTILDIACRKHLGF 149

Query: 482 SMRG 485
            +  
Sbjct: 150 PLPN 153


>gi|153001896|ref|YP_001367577.1| 3'-5' exonuclease [Shewanella baltica OS185]
 gi|151366514|gb|ABS09514.1| 3'-5' exonuclease [Shewanella baltica OS185]
          Length = 315

 Score = 38.5 bits (88), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 20/120 (16%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
           ++V   +    V +L       F   T    A   + +   +S +      +        
Sbjct: 113 EVVQPSEFDAVVARLLAEPVLGFDTETR---ASFERGVQHPLSLIQIATADACY------ 163

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFED 488
                       ++ +  E  + LK   E+E+ LK+G  ++ D   L R  GI++    D
Sbjct: 164 ----------LFQHAILGEQFTQLKTVLEDENILKVGVGLRSDAQALKRQWGINVASKLD 213


>gi|321451818|gb|EFX63353.1| hypothetical protein DAPPUDRAFT_35911 [Daphnia pulex]
          Length = 143

 Score = 38.5 bits (88), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASI 508
           L  L K F + + +KI      D + L R +GI +      +  + +L  G     +  +
Sbjct: 71  LQPLNKVFGDPNIVKIFQGADSDVIWLQRDFGIYIVNLFYTLQAASLL--GFEKKGLPFL 128

Query: 509 AQKWLSYT 516
            Q +    
Sbjct: 129 LQHYCQVH 136


>gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
 gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
          Length = 236

 Score = 38.5 bits (88), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 20/138 (14%)

Query: 392 FKIITDTMDAFHSKPIAIA----ISTLDQKDDTSFKVETI-----FIDLSVHTSQDSTGK 442
           F   T  +D    + I I      +           +           L+VH   D + K
Sbjct: 6   FDTETTGLDNKADRIIEIGGIELFNHFPTGKTLHLYINPGDRKVHPDALAVHGITDESLK 65

Query: 443 NTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSY 494
           +     ++   +  FFE      I HN  +D        +R G   I      D + M+ 
Sbjct: 66  DKPPFADVADEILAFFE--GAKWIAHNATFDMGFVNAEFNRLGRPPILPDMVIDTLAMAR 123

Query: 495 VLDSGRSSHDIASIAQKW 512
                   + + ++ +++
Sbjct: 124 RKHP-MGPNSLDALCRRY 140


>gi|85717198|ref|ZP_01048155.1| ribonuclease D [Nitrobacter sp. Nb-311A]
 gi|85695978|gb|EAQ33879.1| ribonuclease D [Nitrobacter sp. Nb-311A]
          Length = 420

 Score = 38.5 bits (88), Expect = 6.6,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 63/196 (32%), Gaps = 26/196 (13%)

Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429
            I  T ++     +       +          ++     I +++ D+             
Sbjct: 41  LITTTAELASVCARFAKHPVITVDTEFLRETTYYPLLCVIQMASPDEA------------ 88

Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK-LVLHRYGISMRGFED 488
                 + D+  +       L+       NE  LK+ H  + D  ++ H+ GI      D
Sbjct: 89  -----IAIDALAEGID----LNSFFTLMSNEGVLKVFHAARQDIEIIWHQAGIIPHPVFD 139

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
             + + VL  G S     ++ ++   +      K+ + +    +   ++  E+A+ +   
Sbjct: 140 TQVAAMVLGYGDSI-AYDALVERVTGHRPD---KTHRFTDWSRRPLTAEQLEYAVADVTH 195

Query: 549 ILQLWLLLRPKLIVEK 564
           +  ++  L   L    
Sbjct: 196 LRDVFAALDVDLRKRG 211


>gi|170722539|ref|YP_001750227.1| excinuclease ABC subunit C [Pseudomonas putida W619]
 gi|229557935|sp|B1JB85|UVRC_PSEPW RecName: Full=UvrABC system protein C; Short=Protein uvrC; AltName:
           Full=Excinuclease ABC subunit C
 gi|169760542|gb|ACA73858.1| excinuclease ABC, C subunit [Pseudomonas putida W619]
          Length = 607

 Score = 38.5 bits (88), Expect = 6.7,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 25/169 (14%)

Query: 77  YPDYKANRPKIPEML-----LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAE-K 130
           Y   K    K+P++L       QL + R   Q              D  +         K
Sbjct: 449 YGRIKDGEGKLPDVLLVDGGKGQLNMAREVMQELAFT---------DLTLLGVAKGVTRK 499

Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190
            GF    ++       L      L+    ++  D  H   ++ I   +    +A     +
Sbjct: 500 AGFETLYLNDVAHEFTLKGDNPALHLI--QQIRDEAH---RFAITGHRARRGKA---RRV 551

Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENI-LINASRI-KQKKRRENILEYA 237
            ++  + G+G K    LL+ +G L+ +   +   I K     + + E  
Sbjct: 552 SSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAESI 600


>gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
 gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
          Length = 229

 Score = 38.5 bits (88), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 40/145 (27%), Gaps = 31/145 (21%)

Query: 392 FKIITDTMDAFHSK--------------PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437
               T  +D                               +            LS    +
Sbjct: 9   LDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGLSDEFLK 68

Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL-------VLHRYGI---SMRGFE 487
           D    +T+  + L ++           I HN  +D         +L R  I    +    
Sbjct: 69  DKPLFHTIADDFLEFI------SDSKLIIHNAPFDIKFLNHELSLLKRTEIKLLELANTI 122

Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW 512
           D ++M+  +  G   +++ ++ +++
Sbjct: 123 DTLVMARSMFPGA-KYNLDALCKRF 146


>gi|317482293|ref|ZP_07941314.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916309|gb|EFV37710.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
          Length = 433

 Score = 38.1 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 12/189 (6%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK--VETIFIDLSVHTSQDST 440
           +L          +T T+D +H    A+A +T     D            D  +   ++  
Sbjct: 10  RLLKEPRGGVPDVTSTLDGYHRVCDAMAEATGSLAADAERASGFRYGHEDWLIQFKREGA 69

Query: 441 GKNTLTKEILSYL-KKF--FENE--HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L    L+     +  F +       I H+   D       G+  +   D  + + +
Sbjct: 70  GIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKALFDTEIAARL 129

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  V+++L  +
Sbjct: 130 L--GLHRFGLAAVTEHYLGIT---LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETM 184

Query: 556 LRPKLIVEK 564
           +R  L    
Sbjct: 185 MRRDLKAAG 193


>gi|315656649|ref|ZP_07909536.1| ribonuclease D [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492604|gb|EFU82208.1| ribonuclease D [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 406

 Score = 38.1 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           I H+   D   L   G+  +   D  L + +L+       +A++ ++ L  +   + K  
Sbjct: 93  ILHDATQDLPYLLELGMRPQLLFDTELAAKLLN--FQGFGLAAVLEQVLGIS---LAKEH 147

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            ++    +   S  Q +A  + + ++ L   L  +L         E+
Sbjct: 148 SAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQ 194


>gi|315655438|ref|ZP_07908338.1| ribonuclease D [Mobiluncus curtisii ATCC 51333]
 gi|315490378|gb|EFU80003.1| ribonuclease D [Mobiluncus curtisii ATCC 51333]
          Length = 406

 Score = 38.1 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           I H+   D   L   G+  +   D  L + +L+       +A++ ++ L  +   + K  
Sbjct: 93  ILHDATQDLPYLLELGMRPQLLFDTELAAKLLN--FQGFGLAAVLEQVLGIS---LAKEH 147

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            ++    +   S  Q +A  + + ++ L   L  +L         E+
Sbjct: 148 SAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQ 194


>gi|308806878|ref|XP_003080750.1| exonuclease family protein (ISS) [Ostreococcus tauri]
 gi|116059211|emb|CAL54918.1| exonuclease family protein (ISS) [Ostreococcus tauri]
          Length = 793

 Score = 38.1 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD------DTSFKVETIFIDLSVH 434
           V+K                D      + +++     K           K+  +  +++  
Sbjct: 188 VEKGLQPRLLGIDCEMCETDRDARALVGVSVVDESGKVLLKTLVKPPGKIVDMKKEITGL 247

Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSY 494
             +D        +++   + K  +    + +GH++ YD   L    I  +   D  L+  
Sbjct: 248 EEKDVLNAKKTLEDVQEAIVKLCK-PGTVLVGHSLVYDLKALK---IDHQPVIDTALLFR 303

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543
             +  +S+  +A + +K+L    +E           D + D++      
Sbjct: 304 YSNVRKSTPSLAVLCEKFLDRKLRENAAG-----FHDSVEDAKAALDLA 347


>gi|23465521|ref|NP_696124.1| hypothetical protein BL0948 [Bifidobacterium longum NCC2705]
 gi|23326181|gb|AAN24760.1| narrowly conserved hypothetical protein [Bifidobacterium longum
           NCC2705]
          Length = 433

 Score = 38.1 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 12/189 (6%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK--VETIFIDLSVHTSQDST 440
           +L          +T T+D +H    A+A +T     D            D  +   ++  
Sbjct: 10  RLLKEPRGGVPDVTSTLDGYHRVCDALAEATGSLAADAERASGFRYGHEDWLIQFKREGA 69

Query: 441 GKNTLTKEILSYL-KKF--FENE--HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L    L+     +  F +       I H+   D       G+  +   D  + + +
Sbjct: 70  GIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKALFDTEIAARL 129

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  V+++L  +
Sbjct: 130 L--GLHRFGLAAVTEHYLGIT---LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETM 184

Query: 556 LRPKLIVEK 564
           +R  L    
Sbjct: 185 MRRDLKAAG 193


>gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1500

 Score = 38.1 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 79/263 (30%), Gaps = 33/263 (12%)

Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366
           N +    +A   ++         +  +++D            K    R        +   
Sbjct: 366 NMSMMDALAAPEKLVAKAAGWGHKALAITDHGVVQGFPAAGTKCSDIRKSGQEFKILYGV 425

Query: 367 SYTKIVNTKDIQQWVQKLE-TIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQ 416
              ++ N   I   V K E T     F + T   +A   K I I          +   D 
Sbjct: 426 EAYEVNNDARIFAGVDKRELTDEIICFDLETTGTNAKEDKIIEIGAVKLRNLEIVDKFDM 485

Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476
             D    +     +L+  T     G+  +   I +++    ++     + HN  +D   +
Sbjct: 486 LVDPEVPLTEFISNLTNITDDMLKGQADIRTAIDAFIAFCGDSPCL--VAHNAPFDTGFI 543

Query: 477 H----RYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKW----------------LSY 515
                R GI       D + MS ++      H +  +A+ +                L +
Sbjct: 544 RNTCERLGIDFNFSSVDTVPMSQLMLPQLERHKLNYVAEHFGYGDFQHHRGCDDAEVLGH 603

Query: 516 TRKEILKSRKSSIPIDKISDSQV 538
              E+ K   +  P+  I+   +
Sbjct: 604 IFIELSKMLMAQYPLVLITVDML 626


>gi|282878339|ref|ZP_06287131.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
 gi|281299525|gb|EFA91902.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
          Length = 904

 Score = 38.1 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 24/153 (15%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI----DLSV 433
           Q++V+  E      F   T  ++ F    + IA   + Q          +F+    D+  
Sbjct: 511 QEFVKCYEQQDIVVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFMETDRDIPQ 570

Query: 434 HTSQDSTGKNTLTK--------EILSYLKKFFENEHFLKIGHNIKYDKLV----LHRY-- 479
              +         +        E L     +  +   L  GHN  YD  +    L RY  
Sbjct: 571 QLGEIENPLIAEMQRHVLHSHAEGLQMFMDYVGDSMLL--GHNADYDYHILDFNLQRYLP 628

Query: 480 GISMRG----FEDIMLMSYVLDSGRSSHDIASI 508
            IS++     + D + +  +L+     + +  +
Sbjct: 629 AISLKEQCPRYLDSLKLVRLLEPNLREYKLKHL 661


>gi|329296338|ref|ZP_08253674.1| ribonuclease D [Plautia stali symbiont]
          Length = 373

 Score = 38.1 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 59/200 (29%), Gaps = 29/200 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +YT I +   +    Q+     + +          ++ +   I +   +Q          
Sbjct: 2   NYTLIDHNDQLAAVCQQARQHRAVALDTEFVRTRTYYPQLGLIQLFDGEQ---------- 51

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG 485
                           + LT    +      ++    K  H    D ++ LHR+G     
Sbjct: 52  ------------LVLIDPLTISDWAPFIALLQDRQLTKFLHAGGEDLEVFLHRFGCLPEP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A++   +      E+ KS   +  + +    +  ++A  
Sbjct: 100 MIDTQILAAFAGQP--LSWGFAAMVNHFNQI---ELDKSEARTDWLARPLTERQCQYAAA 154

Query: 545 NSNVILQLWLLLRPKLIVEK 564
           +   +L +   L  +     
Sbjct: 155 DVAYLLPIAHQLVAQTEAAG 174


>gi|298346894|ref|YP_003719581.1| ribonuclease D [Mobiluncus curtisii ATCC 43063]
 gi|298236955|gb|ADI68087.1| ribonuclease D [Mobiluncus curtisii ATCC 43063]
          Length = 406

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           I H+   D   L   G+  +   D  L + +L+       +A++ ++ L  +   + K  
Sbjct: 93  ILHDATQDLPYLLELGMRPQLLFDTELAAKLLN--FQGFGLAAVLEQVLGIS---LAKEH 147

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            ++    +   S  Q +A  + + ++ L   L  +L         E+
Sbjct: 148 SAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQ 194


>gi|261210416|ref|ZP_05924710.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260840474|gb|EEX67040.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 209

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 17/124 (13%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETI 427
            Q+  +        S    T ++D   ++ + IA         +++   +          
Sbjct: 18  YQRLFETARHHEYVSLDCETTSLDPKRAELVTIAATKIIDNRILTSQPFEVRLCAPQSLD 77

Query: 428 FIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVL-----HRYGI 481
              + +H  +    ++ L+ KE L  L  F  N     +G++I+YDK +L        G 
Sbjct: 78  SGSVRIHKIRHQDLQDGLSEKEALIQLIDFIGN--RPLVGYHIRYDKTILDIACRKHLGF 135

Query: 482 SMRG 485
            +  
Sbjct: 136 PLPN 139


>gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
 gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
          Length = 967

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 100/299 (33%), Gaps = 42/299 (14%)

Query: 392 FKIITDTMDAFHSK------PIAI-------AISTLDQKDDTSFKVETIFIDLSVHTSQD 438
               T                +AI       + STL           T    ++     D
Sbjct: 7   VDFETTGSHPRQGDSIIQIGAVAIDDGQITESFSTLIHPGQDIPPFITQLTGITNEMVAD 66

Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-------DIML 491
           +     +  + L  L      +    + HN  +D   L    +S +G+        D + 
Sbjct: 67  APSLEEVFPDFLRLL------DGRAFVAHNASFDLQFLQEALLS-QGYYAFDGYVLDTVE 119

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
           +S VL   ++S+ +  +A +       EI          D ++ +Q+  H + +    L 
Sbjct: 120 LSRVLLPMQNSYRLGELASEL------EIEHDNPHQADSDALATAQLFLHLL-DILKKLP 172

Query: 552 LWLLLRPKLIVEKLLH----VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607
           L  + R +++V         +  +++   +  + +++ T  + D   +  +  +++  L 
Sbjct: 173 LVTIQRLQMLVSSFRSDIEVLLRQIEMEKLIELPELDGTPTKTDSSDMWDIYRQLA--LR 230

Query: 608 SLEENIYD-LSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQDLEQINCGD 664
             EE +   L     +++  K   + L   L      + K +G  +  AQ+       +
Sbjct: 231 KREEKLTASLKHPPVDVTVTKAFAEQLEDVLGENGYMQAKMSGYQRRDAQEAMMHAVYE 289


>gi|207346529|gb|EDZ73002.1| YDR263Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 430

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD--- 143
            PEM       +    +   IP I    FEAD  +     +   +G    IIS D D   
Sbjct: 126 TPEM----AKCIIDYCKLHSIPYIVAP-FEADPQMVYLEKMGLIQG----IISEDSDLLV 176

Query: 144 --LMQLVSPTTCLYDTVKEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPG 198
                L++        ++  K D   + + +    +  ++   L  L G   D   GI  
Sbjct: 177 FGCKTLITKLNDQGKALEISKDDFSALPENFPLGELSEQQFRNLVCLAG--CDYTSGIWK 234

Query: 199 IGYKTAALLLQEYGNLENILINASR 223
           +G  TA  +++ Y  +++ILI   R
Sbjct: 235 VGVVTAMKIVKRYSEMKDILIQIER 259


>gi|194214356|ref|XP_001496868.2| PREDICTED: similar to CAP-Gly domain-containing linker protein 1
            (Restin) (Cytoplasmic linker protein 170 alpha-2)
            (CLIP-170) (Reed-Sternberg intermediate
            filament-associated protein) (Cytoplasmic linker protein
            1) isoform 1 [Equus caballus]
          Length = 2101

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 102/269 (37%), Gaps = 25/269 (9%)

Query: 428  FIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLHRYGISMRGF 486
              DL     + S+      +E+L  L+K   + E  LK     K +   L +  + ++  
Sbjct: 987  CQDLKARYEEASSETKAKHEEVLQNLQKMLSDTEERLKA---AKKENSDLLQEMVELKKQ 1043

Query: 487  ED-IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545
             D    ++Y+L S          A+K +    +E+   +     + +  ++   E     
Sbjct: 1044 ADKAKSLTYLLTS----------AKKEIELMSEELRGVKSEKQLLAQEGNALKLEKGSLL 1093

Query: 546  SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT-----GIQIDQDLLKQVSA 600
            S +I     +   +   +KL  + E L+     V+ + + T       Q+++  L     
Sbjct: 1094 SKLIEVEAKITLLQEDQQKLWSLNETLNLEKEKVLEEKQDTEKLYQQEQLNKAALAIERE 1153

Query: 601  EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660
            ++ K +   +E +  ++ E  +L + K     L  +L+F     +K      + +D E  
Sbjct: 1154 KLFKEINIAQEELLKINVENDSLRASKASLQALIEELQF-----SKDNLITESKRDQEAK 1208

Query: 661  NCGDNPIIKNILEWRQLSKIKSTYADSLP 689
            +  ++ I K + E   L+K K      L 
Sbjct: 1209 DHLEDRIEKLVTENLALAKDKDEIIQRLQ 1237


>gi|53712323|ref|YP_098315.1| hypothetical protein BF1031 [Bacteroides fragilis YCH46]
 gi|60680496|ref|YP_210640.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343]
 gi|253563640|ref|ZP_04841097.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52215188|dbj|BAD47781.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491930|emb|CAH06690.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343]
 gi|251947416|gb|EES87698.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301162033|emb|CBW21577.1| putative 3'-5' exonuclease [Bacteroides fragilis 638R]
          Length = 216

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 9/121 (7%)

Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDI--ASIAQKW 512
           +  E+   +K+G ++K D ++LH+          I L  YV         I   S+ + +
Sbjct: 91  ELLEDPKVIKVGLSLKDDFMMLHKRA-PFNQQACIELQEYV-----RPFGIQDKSLQKIY 144

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572
                ++I KS++ S     +     +++A  ++   L ++ LL  +L       +    
Sbjct: 145 GILFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYHLL-EELKRTGNYELAPEE 203

Query: 573 D 573
           +
Sbjct: 204 E 204


>gi|323334127|gb|EGA75511.1| Din7p [Saccharomyces cerevisiae AWRI796]
 gi|323355597|gb|EGA87417.1| Din7p [Saccharomyces cerevisiae VL3]
          Length = 383

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD--- 143
            PEM       +    +   IP I    FEAD  +     +   +G    IIS D D   
Sbjct: 79  TPEM----AKCIIDYCKLHSIPYIVAP-FEADPQMVYLEKMGLIQG----IISEDSDLLV 129

Query: 144 --LMQLVSPTTCLYDTVKEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPG 198
                L++        ++  K D   + + +    +  ++   L  L G   D   GI  
Sbjct: 130 FGCKTLITKLNDQGKALEISKDDFSALPENFPLGELSEQQFRNLVCLAG--CDYTSGIWK 187

Query: 199 IGYKTAALLLQEYGNLENILINASR 223
           +G  TA  +++ Y  +++ILI   R
Sbjct: 188 VGVVTAMKIVKRYSEMKDILIQIER 212


>gi|294673634|ref|YP_003574250.1| 3'-5' exonuclease [Prevotella ruminicola 23]
 gi|294472246|gb|ADE81635.1| 3'-5' exonuclease [Prevotella ruminicola 23]
          Length = 217

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 31/229 (13%)

Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407
           Q    ++        I +     +V+  + ++ V  L       F   T           
Sbjct: 6   QNKVDKKAISQFPRAIFDGKIVVVVSQAEAERAVDYLLAQPVLGFDTETRP--------- 56

Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467
             +         +  +V T         +                +K+   +    K+G 
Sbjct: 57  --SFKKGVHHKCSLLQVSTSNCCFLFRLNHIGLCP---------AVKRLLADNTVTKVGL 105

Query: 468 NIKYDKLVLHRYG-ISMRGFEDIMLMSYVLDSGRSSHDIAS--IAQKWLSYTRKEILKSR 524
             + D L LH+ G   M  F D       L        I    +A+ + +   + I K  
Sbjct: 106 AWRNDALGLHQLGDFEMGEFVD-------LQDMARKIGIEDQSLAKLYANVFGERISKRE 158

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
           + +     + D   + +A  ++   +QL+   + ++I      +    +
Sbjct: 159 QLTNWERDVLDDHQKRYAATDAWACVQLYNEFK-RMIENNDYQLVIVPE 206


>gi|126175491|ref|YP_001051640.1| 3'-5' exonuclease [Shewanella baltica OS155]
 gi|125998696|gb|ABN62771.1| 3'-5' exonuclease [Shewanella baltica OS155]
          Length = 315

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 20/125 (16%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              + ++V   +    V +L+      F   T    A   + +   +S +      +   
Sbjct: 108 QQIHIEVVQPSEFDAVVARLQAEQVLGFDTETR---ASFERGVQHPLSLIQIATADACY- 163

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISM 483
                            ++ +  E  + LK   E+E+ LK+G  ++ D   L R  GI++
Sbjct: 164 ---------------LFQHAILGEQFTQLKTVLEDENILKVGVGLRSDAQALKRQWGINV 208

Query: 484 RGFED 488
               D
Sbjct: 209 ASKLD 213


>gi|46190415|ref|ZP_00206459.1| COG0349: Ribonuclease D [Bifidobacterium longum DJO10A]
 gi|189439553|ref|YP_001954634.1| ribonuclease D [Bifidobacterium longum DJO10A]
 gi|189427988|gb|ACD98136.1| Ribonuclease D [Bifidobacterium longum DJO10A]
          Length = 433

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 12/189 (6%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK--VETIFIDLSVHTSQDST 440
           +L          +T T+D +H    A+A +T     D            D  +   ++  
Sbjct: 10  RLLKEPRGGVPDVTSTLDGYHRVCDAMAEATGSLAADAERASGFRYGHEDWLIQFKREGA 69

Query: 441 GKNTLTKEILSYL-KKF--FENE--HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L    L+     +  F +       I H+   D       G+  +   D  + + +
Sbjct: 70  GIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKALFDTEIAARL 129

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  V+++L  +
Sbjct: 130 L--GLHRFGLAAVTEHYLGIT---LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETM 184

Query: 556 LRPKLIVEK 564
           +R  L    
Sbjct: 185 MRRDLKAAG 193


>gi|121591065|ref|ZP_01678378.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121729644|ref|ZP_01682121.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|147675462|ref|YP_001218570.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153803140|ref|ZP_01957726.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|153819596|ref|ZP_01972263.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|229506903|ref|ZP_04396411.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229509276|ref|ZP_04398759.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229512692|ref|ZP_04402160.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229516220|ref|ZP_04405668.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229520981|ref|ZP_04410402.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229527205|ref|ZP_04416598.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229606416|ref|YP_002877064.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254851434|ref|ZP_05240784.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255744098|ref|ZP_05418052.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161990|ref|ZP_06031007.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167979|ref|ZP_06035678.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262192561|ref|ZP_06050711.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|298500931|ref|ZP_07010733.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|121547098|gb|EAX57233.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121628578|gb|EAX61057.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|124121331|gb|EAY40074.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|126509852|gb|EAZ72446.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|146317345|gb|ABQ21884.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229335213|gb|EEO00697.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229341866|gb|EEO06867.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229346646|gb|EEO11616.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229350202|gb|EEO15154.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229353591|gb|EEO18528.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229356008|gb|EEO20927.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369071|gb|ACQ59494.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254847139|gb|EET25553.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255738363|gb|EET93754.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023512|gb|EEY42214.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028368|gb|EEY47024.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262031606|gb|EEY50194.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297540435|gb|EFH76494.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|327483170|gb|AEA77577.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 209

 Score = 38.1 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 17/124 (13%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETI 427
            Q+  +        S    T ++D   ++ + IA         I++   +          
Sbjct: 18  YQRLFETARHHEYVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLD 77

Query: 428 FIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVL-----HRYGI 481
              + +H  +     + L+ KE L  L +F  N     +G++I+YDK +L        G 
Sbjct: 78  SGSVRIHRIRHQDLHDGLSEKEALLQLIEFIGN--RPLVGYHIRYDKTILDIACRKHLGF 135

Query: 482 SMRG 485
            +  
Sbjct: 136 PLPN 139


>gi|238754880|ref|ZP_04616230.1| Ribonuclease D [Yersinia ruckeri ATCC 29473]
 gi|238706891|gb|EEP99258.1| Ribonuclease D [Yersinia ruckeri ATCC 29473]
          Length = 373

 Score = 38.1 bits (87), Expect = 7.5,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +Y  I     +QQ  ++       +          ++ +   I +   +Q         T
Sbjct: 2   NYQLITTDAALQQVCEQARHHAQVALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLPIT 61

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-G 485
            +                         ++  +++  +K  H    D  V       +   
Sbjct: 62  EWQP----------------------FRELLQDQSVVKFLHAGSEDLEVFLNAFQQLPTP 99

Query: 486 FEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D  +++    +GR+ S   A +  +       E+ KS   +  + +    +  ++A  
Sbjct: 100 MIDTQVLA--AFTGRTLSCGFAMLVAELQGV---ELDKSESRTDWLARPLTEKQCDYAAA 154

Query: 545 NSNVILQLWLLL 556
           +   +L +   L
Sbjct: 155 DVFYLLPMAQQL 166


>gi|227546007|ref|ZP_03976056.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239621937|ref|ZP_04664968.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322688886|ref|YP_004208620.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|322690861|ref|YP_004220431.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227213641|gb|EEI81490.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239515128|gb|EEQ54995.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320455717|dbj|BAJ66339.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460222|dbj|BAJ70842.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 433

 Score = 38.1 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 12/189 (6%)

Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK--VETIFIDLSVHTSQDST 440
           +L          +T T+D +H    A+A +T     D            D  +   ++  
Sbjct: 10  RLLKEPRGGVPDVTSTLDGYHRVCDAMAEATGSLAADAERASGFRYGHEDWLIQFKREGA 69

Query: 441 GKNTLTKEILSYL-KKF--FENE--HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYV 495
           G   L    L+     +  F +       I H+   D       G+  +   D  + + +
Sbjct: 70  GIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKALFDTEIAARL 129

Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555
           L  G     +A++ + +L  T   + K   ++    +      + +A  +  V+++L  +
Sbjct: 130 L--GLHRFGLAAVTEHYLGIT---LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETM 184

Query: 556 LRPKLIVEK 564
           +R  L    
Sbjct: 185 MRRDLKAAG 193


>gi|91092754|ref|XP_973448.1| PREDICTED: similar to GM14514p [Tribolium castaneum]
 gi|270014889|gb|EFA11337.1| hypothetical protein TcasGA2_TC010877 [Tribolium castaneum]
          Length = 237

 Score = 38.1 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 9/168 (5%)

Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463
           +  + +           +   +   I +S         + +  K++   L     +    
Sbjct: 68  ADVLVLGFDVEWPFSFQTGPGKAALIQISPDLDTCYLIQISDLKKLPKGLSVLLAHPKVR 127

Query: 464 KIGHNIKYDKLVLHR--YGISM-----RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516
             G NIK D   L R   G  +        +  +L + +L   +    +  +    L  T
Sbjct: 128 ITGVNIKNDIRKLSRDFAGFDVEKNIENCIDSGVLANQIL-PFQQRWSMERLVTFLLKMT 186

Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564
             +  K R S   +  +S  Q+ ++A  ++   L L+  L+ +   E+
Sbjct: 187 ISKDNKVRMSKWHVSPLSKEQL-DYAATDAYASLVLYNELKKREAQEE 233


>gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes]
          Length = 1465

 Score = 38.1 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 18/135 (13%)

Query: 393 KIITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
            + T  + A ++  I IA S           D+  D    +     +L+  T +   G  
Sbjct: 431 DVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGITDKHLQGAK 490

Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGIS--MRGFEDIMLMSYVLD 497
            L   +L   + F ++   + + HN  +D   ++    R+ +    +   D +  +  L 
Sbjct: 491 PLVT-VLKAFQDFCKD--SILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNLY 547

Query: 498 SGRSSHDIASIAQKW 512
                H +  + +++
Sbjct: 548 PEYKRHGLGPLTKRF 562


>gi|260909505|ref|ZP_05916208.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636353|gb|EEX54340.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 900

 Score = 38.1 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 24/155 (15%)

Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI------STLDQKDDTSF-----KVET 426
           +++    +T     F   T  ++ F    + IA         ++      F      +  
Sbjct: 506 ERFAHSFDTEEIVVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIKTERPIPA 565

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RY-- 479
           +  D+      +      L       L+ F +     + + HN  +D  +L     RY  
Sbjct: 566 MLGDIPNPIVAELQRNTCLP--AAQALQDFMQYVGDSVLLAHNADFDYNILRFNLQRYCP 623

Query: 480 GISMRG----FEDIMLMSYVLDSGRSSHDIASIAQ 510
            I +      + D + +  +L  G   + + ++ +
Sbjct: 624 SIDLHATHPTYFDSLKIIRLLQPGLKQYKLKALLE 658


>gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1635

 Score = 38.1 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---LSVHTSQ--- 437
           +       F + T  + A H+  I IA +T   K +   + +        LS  T++   
Sbjct: 588 MYESTYVVFDVETTGLSAVHNDLIQIA-ATKMHKGNPIDEFDEFINPGYRLSEFTTELTG 646

Query: 438 ---DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
              D         E+L+  +KF E    + + HN  +D   ++    R G+ +  +   D
Sbjct: 647 ITDDHVKNAKPLYEVLTKFQKFCE--GTILVAHNASFDVGFMNMNYSRNGLPIISQPVVD 704

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L        +  + +K+
Sbjct: 705 TLEFARNLYPEMKRFGLGQLTKKF 728


>gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11]
 gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1635

 Score = 38.1 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 18/144 (12%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID---LSVHTSQ--- 437
           +       F + T  + A H+  I IA +T   K +   + +        LS  T++   
Sbjct: 588 MYESTYVVFDVETTGLSAVHNDLIQIA-ATKMHKGNPIDEFDEFINPGYRLSEFTTELTG 646

Query: 438 ---DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISM--RGFED 488
              D         E+L+  +KF E    + + HN  +D   ++    R G+ +  +   D
Sbjct: 647 ITDDHVKNAKPLYEVLTKFQKFCE--GTILVAHNASFDVGFMNMNYSRNGLPIISQPVVD 704

Query: 489 IMLMSYVLDSGRSSHDIASIAQKW 512
            +  +  L        +  + +K+
Sbjct: 705 TLEFARNLYPEMKRFGLGQLTKKF 728


>gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512]
          Length = 241

 Score = 38.1 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 16/136 (11%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I I    L     T   +             D+   + +T E L 
Sbjct: 6   FDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLK 65

Query: 452 YLKKFFENE--------HFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSYVL 496
             K F E              I HN  +D         R G   I      D + M+   
Sbjct: 66  DKKAFAEVAEEILAFFGDAKWIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARRK 125

Query: 497 DSGRSSHDIASIAQKW 512
                 + + ++ +++
Sbjct: 126 HP-MGPNSLDALCRRY 140


>gi|229817486|ref|ZP_04447768.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM
           20098]
 gi|229785275|gb|EEP21389.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM
           20098]
          Length = 430

 Score = 38.1 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           I H+   D     + G++ +   D  + + +L  G S   +A++ +++L  T   + K  
Sbjct: 94  IIHDAMMDLPGFAQIGMTPQRLFDTEMAARML--GLSRFGLAAVTERYLGIT---LAKEH 148

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577
            ++    +      + +A  +  ++++L   +R  L         E   + ++
Sbjct: 149 SAADWSYRPLPRDWRNYAALDVELLIELERKMRADLKASGKEEWAEEEFRHIL 201


>gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
 gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
          Length = 241

 Score = 38.1 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 16/136 (11%)

Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451
           F   T  +D    + I I    L     T   +             D+   + +T E L 
Sbjct: 6   FDTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLK 65

Query: 452 YLKKFFENE--------HFLKIGHNIKYDKLV----LHRYG---ISMRGFEDIMLMSYVL 496
             K F E              I HN  +D         R G   I      D + M+   
Sbjct: 66  DKKAFAEVAEEILAFFGDAKWIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARRK 125

Query: 497 DSGRSSHDIASIAQKW 512
                 + + ++ +++
Sbjct: 126 HP-MGPNSLDALCRRY 140


>gi|168037523|ref|XP_001771253.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677494|gb|EDQ63964.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 188

 Score = 38.1 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFED-IMLMSYVL-DS 498
           +      I + L  F ++      G  IK D L L R +G+   G  D   L + VL   
Sbjct: 70  QMLYLDSIPTELVNFLKDPSIKFPGVGIKGDALKLKRDWGLECNGAIDLTTLAASVLGRP 129

Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556
              +  + S+A+  + Y   +  K    S     I D    E+A  ++ V   +   L
Sbjct: 130 ELKAAGLKSLAKVVMDYDMAK-PKRVTMSNWAKPILDKVQVEYASLDAWVSYAIHQKL 186


>gi|322389907|ref|ZP_08063447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143343|gb|EFX38781.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 836

 Score = 38.1 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 66/202 (32%), Gaps = 36/202 (17%)

Query: 385 ETIGSASFKIITDTMDAFHSKP-IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443
           +    A   +   +  +      + I I    +   +          L  H  Q +   +
Sbjct: 23  QKRKYAIVDLEATSAGSNAKIIQVGIVIIEDGRIRQSYETDVNPHERLDEHIKQLTGLTD 82

Query: 444 TLTK---EILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RYGISMRGFE-DIMLMSY 494
              K   E     K+ FE  E  + + HN+K+D  +L       G  +     D + +S 
Sbjct: 83  ARLKKAPEFAQVAKEIFELIEDAVFVAHNVKFDANLLAEALFWEGFELTTPRIDTVELSQ 142

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +       +++ ++A +                    +I        A+ ++    QL L
Sbjct: 143 IFYPTLERYNLGALAAEL-------------------EIELHHAHS-ALADAMATAQLLL 182

Query: 555 LLRPKLI------VEKLLHVYE 570
            LR K+       +EKLL + E
Sbjct: 183 KLREKIASLPRGLIEKLLSMAE 204


>gi|296876164|ref|ZP_06900218.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432875|gb|EFH18668.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
          Length = 817

 Score = 38.1 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 30/187 (16%)

Query: 385 ETIGSASFKIITDTMDAFHSKP-IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS---T 440
           +    A   +   +  +      + I I    +   +          L  H  Q +    
Sbjct: 4   QKRKYAIVDLEATSAGSNAKIIQVGIVIIEDGRITQSYETDVNPHERLDEHIKQLTGLTD 63

Query: 441 GKNTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLH----RYGISMRGFE-DIMLMSY 494
            +     E     K+ FE  E  + + HN+K+D  +L       G  +     D + +S 
Sbjct: 64  ARLRKAPEFAQVAKEIFELIEDAVFVAHNVKFDANLLAEALFWEGFELTTPRIDTVELSQ 123

Query: 495 VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554
           +       +++ ++A +                    +I        A+ ++    QL L
Sbjct: 124 IFYPTLERYNLGALAAEL-------------------EIELHHAHS-ALADAMATAQLLL 163

Query: 555 LLRPKLI 561
            LR K+ 
Sbjct: 164 KLREKIA 170


>gi|285018846|ref|YP_003376557.1| ribonuclease d protein [Xanthomonas albilineans GPE PC73]
 gi|283474064|emb|CBA16565.1| probable ribonuclease d protein [Xanthomonas albilineans]
          Length = 361

 Score = 38.1 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 6/126 (4%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             L  +  +   LKI H+   D +      G   R   D  + +  L    +      + 
Sbjct: 61  QALAPWLSDPGILKIMHSASEDLVTFKCACGTLPRPLFDTQIAA-GLAGIGAGMGYQKLV 119

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHV 568
                     + K    S  + +       E+A ++   +  L   L  +L   ++   +
Sbjct: 120 LDITGIH---LTKGETRSDWLRRPLSPAQLEYAADDVRHLFALHDTLHARLQALDRSTWL 176

Query: 569 YERLDK 574
            E  ++
Sbjct: 177 QEDGER 182


>gi|217970707|ref|YP_002355941.1| excinuclease ABC subunit C [Thauera sp. MZ1T]
 gi|217508034|gb|ACK55045.1| excinuclease ABC, C subunit [Thauera sp. MZ1T]
          Length = 605

 Score = 38.1 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167
             +   G EA  ++        K G    I    ++ + L   +  L+  V  E  D  H
Sbjct: 477 AILAEVGLEAVAMVGVAKGEGRKAGLETLIFPDGREGLALGGESAALHLIV--EIRDEAH 534

Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219
              ++ I   +    +A  G  +++   +PG+G      LL  +G L+ +  
Sbjct: 535 ---RFAITGHRAKRAKARVGSKLED---VPGVGPSRRRNLLAAFGGLDGVRE 580


>gi|6320469|ref|NP_010549.1| Din7p [Saccharomyces cerevisiae S288c]
 gi|2501673|sp|Q12086|DIN7_YEAST RecName: Full=DNA damage-inducible protein DIN7
 gi|1134889|emb|CAA92581.1| unknown [Saccharomyces cerevisiae]
 gi|1143552|emb|CAA62233.1| DIN7 protein [Saccharomyces cerevisiae]
 gi|1226039|emb|CAA94102.1| Din7p [Saccharomyces cerevisiae]
 gi|151942240|gb|EDN60596.1| DNA damage-inducible protein [Saccharomyces cerevisiae YJM789]
 gi|190404789|gb|EDV08056.1| DNA damage-inducible protein DIN7 [Saccharomyces cerevisiae
           RM11-1a]
 gi|259145501|emb|CAY78765.1| Din7p [Saccharomyces cerevisiae EC1118]
 gi|285811283|tpg|DAA12107.1| TPA: Din7p [Saccharomyces cerevisiae S288c]
          Length = 430

 Score = 38.1 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD--- 143
            PEM       +    +   IP I    FEAD  +     +   +G    IIS D D   
Sbjct: 126 TPEM----AKCIIDYCKLHSIPYIVAP-FEADPQMVYLEKMGLIQG----IISEDSDLLV 176

Query: 144 --LMQLVSPTTCLYDTVKEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPG 198
                L++        ++  K D   + + +    +  ++   L  L G   D   GI  
Sbjct: 177 FGCKTLITKLNDQGKALEISKDDFSALPENFPLGELSEQQFRNLVCLAG--CDYTSGIWK 234

Query: 199 IGYKTAALLLQEYGNLENILINASR 223
           +G  TA  +++ Y  +++ILI   R
Sbjct: 235 VGVVTAMKIVKRYSEMKDILIQIER 259


>gi|258623764|ref|ZP_05718722.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
 gi|258583961|gb|EEW08752.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
          Length = 209

 Score = 38.1 bits (87), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDD 419
              +     Q            S    T ++D   ++ + IA         +++   +  
Sbjct: 10  HTKLKESPYQALFNTAHHQEYVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVR 69

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476
                      + +H  +    ++ L+ KE L  L  F  N     +G++I+YDK +L  
Sbjct: 70  LCAPQSLDSGSVRIHKIRHQDLQDGLSEKEALIQLIDFIGN--RPLVGYHIRYDKTILDI 127

Query: 477 ---HRYGISMRG 485
                 G  +  
Sbjct: 128 ACRKHLGFPLPN 139


>gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 470

 Score = 38.1 bits (87), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 11/135 (8%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTS-----FKVETIFIDLSVHTSQDSTGKN 443
                + T        +   IA+   +   + S        ET         +    G  
Sbjct: 5   YVLLDLETTGATPLVDRITEIALIRFENGQEVSRWQTLVNPETAIPPFIQRLTGIDDGMV 64

Query: 444 TLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLHRY----GISMR-GFEDIMLMSYVLD 497
                      +   + E  +   HN+++D   L       GI +R      + +S  L 
Sbjct: 65  ATAPRFREVAGELLNHLEGAVLCAHNVRFDHGFLKNEFKRIGIDLRQKVLCTVKLSRKLY 124

Query: 498 SGRSSHDIASIAQKW 512
               SH + SI ++ 
Sbjct: 125 PQHRSHSLDSIIERH 139


>gi|229918339|ref|YP_002886985.1| excinuclease ABC, C subunit [Exiguobacterium sp. AT1b]
 gi|229469768|gb|ACQ71540.1| excinuclease ABC, C subunit [Exiguobacterium sp. AT1b]
          Length = 594

 Score = 38.1 bits (87), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-LINASR 223
           ++  + ++ I   + +  + +T   +D IPG+   G K    L++ +G+++ I L +  +
Sbjct: 514 MQDEVHRFAITFHRSLRTKKMTKSILDEIPGV---GPKRRQQLIRHFGSMKQIRLASLEQ 570

Query: 224 IKQKKRRENILE 235
           +K+    E + E
Sbjct: 571 LKEAGLPEKLAE 582


>gi|70987206|ref|XP_749082.1| 3'-5' exonuclease/helicase (Wrn) [Aspergillus fumigatus Af293]
 gi|66846712|gb|EAL87044.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus fumigatus
           Af293]
 gi|159123147|gb|EDP48267.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus fumigatus
           A1163]
          Length = 419

 Score = 38.1 bits (87), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 19/120 (15%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVL-----DS---GRSSH 503
           L+K  E+    K G  IK D   L  + GI++RG  ++  +  ++     D     R S 
Sbjct: 244 LRKILESSEITKAGVAIKADCTRLKNFLGINVRGIFELSHLYKLVKYCQSDPALINRRSV 303

Query: 504 DIASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559
           +++   ++       +          +++   ++      ++A  +S   L L+  +  K
Sbjct: 304 NLSEQVEEHFGLPLAKDDDVRCGDWTTALNYRQV------QYAATDSYACLCLFNTMDAK 357


>gi|269926118|ref|YP_003322741.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789778|gb|ACZ41919.1| DNA polymerase III, epsilon subunit [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 960

 Score = 38.1 bits (87), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 42/129 (32%), Gaps = 11/129 (8%)

Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--------SQDSTG 441
            +  +     D    + I I      Q          +   + +          + +   
Sbjct: 8   VALDLEMTGHDPEQDEIIQIGAVKFTQTRVLGRWGTLVRPKVKLPFRIARLTGINPNDLN 67

Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500
           K  +   +   L+ F  +     +GH+I  D   L + G+++     D   ++ +L    
Sbjct: 68  KAPVFDAVKDKLRSFVGD--HPIVGHSIGNDLSFLAKQGLALDNPSLDTWELAMLLMPSL 125

Query: 501 SSHDIASIA 509
           +++ +  +A
Sbjct: 126 NAYSLQGVA 134


>gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
 gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
          Length = 422

 Score = 38.1 bits (87), Expect = 8.2,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 10/159 (6%)

Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLHRYGISMRGFEDIML 491
           +   ++ +G   +    L+ ++   E  E    I H    D   L   G+      D  L
Sbjct: 73  IQLRREGSGIWLIDPIELTTMQPLVEALEGTEWILHAATQDLPCLSDLGLHPAALFDTEL 132

Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551
              +L  G     + ++ +  L +T   + +   +      + D+ + E+A  +  V+++
Sbjct: 133 AGRLL--GYPRVGLGTLVETVLGFTM--LKEHSAADWSTRPLPDAWL-EYAALDVEVLVE 187

Query: 552 LWLLLRPKLIVEK----LLHVYERLDKPMIDVVSQMEIT 586
           L   L  +L+ +         ++ L      V +     
Sbjct: 188 LREALAAELVAQGKDAWARQEFDWLRGFEAPVRTDAWRR 226


>gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 100

 Score = 38.1 bits (87), Expect = 8.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947
           +   +Q  A D+   AM  V ++        K+++ +HDE+V + P     T +   V  
Sbjct: 22  VENIVQAVARDLFVHAMTLVAQT------GHKIVMHVHDEIVIDEPVGSGFTVADACV-L 74

Query: 948 MEKACLPKINLRVPLKVN 965
           M  A LP     +PL  +
Sbjct: 75  M--ATLPDWAAGLPLDAD 90


>gi|148675121|gb|EDL07068.1| polymerase (DNA directed), gamma, isoform CRA_d [Mus musculus]
          Length = 133

 Score = 38.1 bits (87), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934
           ++     + +N  +Q SA D     ++++    E+  +  +  + IHDE+ + V E
Sbjct: 78  VQGEFITSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVRE 133


>gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
 gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
          Length = 474

 Score = 38.1 bits (87), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 35/137 (25%), Gaps = 15/137 (10%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH--------TSQDST 440
                + T        +   IAI  +++          I   + +               
Sbjct: 7   YVLVDLETTGAHPLRDRITEIAILRIERGQLVQRWESLINPGVPIPPTIQGVTGIDDTMV 66

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYGISM-RGFEDIMLMSYV 495
                   +   +    ++   + + HN ++D   L       G          + +S  
Sbjct: 67  AGAPDFAAVADTVAALLDD--CVFVAHNARFDYGFLKTAYAALGREFDAPVLCTVKLSRA 124

Query: 496 LDSGRSSHDIASIAQKW 512
           L      H + +I ++ 
Sbjct: 125 LYPDHHRHGLDAIIERH 141


>gi|317497265|ref|ZP_07955589.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895510|gb|EFV17668.1| exonuclease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 235

 Score = 38.1 bits (87), Expect = 8.3,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 78/249 (31%), Gaps = 52/249 (20%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--------SQDS 439
              +F + T  +     + I I    +     +      I  ++ V          S+D 
Sbjct: 3   DYVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGKYNCIIHPEIEVSDFIINLTGISRDM 62

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIMLMS 493
             K    KE +    +F  +     +GHN+ +D   +       +Y     G + + +  
Sbjct: 63  LRKGIPLKEGVEEFLEF--SGDLPVLGHNVMFDYKFMKMAAASFKYPFEKTGVDTLKVAR 120

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
            +L +G  +  + ++   +                       +Q    A +++     ++
Sbjct: 121 KLL-TGLENKKLETLCAHYHYV--------------------NQAAHRAYDDALATAVVF 159

Query: 554 LLLR------PKLIVEKLLHVYERLDKPMID-------VVSQMEITGIQIDQDLLKQVSA 600
             ++       ++   + L    + ++P           + +    G  +D D + Q   
Sbjct: 160 EQMKKEFPTEEEIFQPQQLQFKVKKERPATPKQKKYLENLMKYHAIGECLDIDQMTQ--R 217

Query: 601 EISKNLLSL 609
           E SK +  +
Sbjct: 218 EASKKIDHI 226


>gi|300721954|ref|YP_003711234.1| inosine-guanosine kinase [Xenorhabdus nematophila ATCC 19061]
 gi|297628451|emb|CBJ89016.1| inosine-guanosine kinase [Xenorhabdus nematophila ATCC 19061]
          Length = 436

 Score = 38.1 bits (87), Expect = 8.3,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 15/198 (7%)

Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMIDVVSQMEI 585
           ++++    + EH I N++ ++    L+R K    +    +  +       +  V++    
Sbjct: 173 MNQLRPENIPEHIIANASALVITAYLVRCKPGEPMPEATMKAIEYAKKHNIPVVLTLGTK 232

Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645
             I  D    +   AE    +   E+  Y+L+G     S P    D++   +        
Sbjct: 233 YVIADDPQWWRDFIAENVSVVAMNEDEAYELTG----FSDPLLAADMVLNWVDLVLCTAG 288

Query: 646 KTGQWKTTAQDLEQINCGDNPIIK-NILEWRQLS------KIKSTYADSLPNHINKRTQR 698
             G +     + E      +P++   I E+ +        K +      + +HI      
Sbjct: 289 PAGLYMAGYTEEEYKRQTLHPLLPGAIAEFNRYEFSRAMRKTECQNPMKVYSHIEPYMGG 348

Query: 699 VHTFYSLASTMTGRLASL 716
                +      G L++L
Sbjct: 349 PEKIMNTNGAGDGALSAL 366


>gi|323309724|gb|EGA62931.1| Din7p [Saccharomyces cerevisiae FostersO]
          Length = 408

 Score = 38.1 bits (87), Expect = 8.4,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD--- 143
            PEM       +    +   IP I    FEAD  +     +   +G    IIS D D   
Sbjct: 104 TPEM----AKCIIDYCKLHSIPYIVAP-FEADPQMVYLEKMGLIQG----IISEDSDLLV 154

Query: 144 --LMQLVSPTTCLYDTVKEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPG 198
                L++        ++  K D   + + +    +  ++   L  L G   D   GI  
Sbjct: 155 FGCKTLITKLNDQGKALEISKDDFSALPENFPLGELSEQQFRNLVCLAG--CDYTSGIWK 212

Query: 199 IGYKTAALLLQEYGNLENILINASR 223
           +G  TA  +++ Y  +++ILI   R
Sbjct: 213 VGVVTAMKIVKRYSEMKDILIQIER 237


>gi|281210039|gb|EFA84207.1| 3'-5' exonuclease domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 315

 Score = 38.1 bits (87), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 27/111 (24%)

Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512
           L++  E+ + LKI H+ + D  +L+                      + + D+   A++ 
Sbjct: 201 LRQILESNNILKIVHDCRRDSEILYHR-------------------HQRAVDLKYEARQQ 241

Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563
            +    EI   R    P+ K+       ++  ++ V+  ++ ++ P+L   
Sbjct: 242 FTENPAEIWGKR----PLSKLMID----YSALDAIVLHPIYNVISPQLQSP 284


>gi|323305497|gb|EGA59240.1| Din7p [Saccharomyces cerevisiae FostersB]
          Length = 430

 Score = 38.1 bits (87), Expect = 8.5,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 19/145 (13%)

Query: 87  IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD--- 143
            PEM       +    +   IP I    FEAD  +     +   +G    IIS D D   
Sbjct: 126 TPEM----AKCIIDYCKLHSIPYIVAP-FEADPQMVYLEKMGLIQG----IISEDSDLLV 176

Query: 144 --LMQLVSPTTCLYDTVKEEKIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPG 198
                L++        ++  K D   + + +    +  ++   L  L G   D   GI  
Sbjct: 177 FGCKTLITKLNDQGKALEISKDDFSALPENFPLGELSEQQFRNLVCLAG--CDYTSGIWK 234

Query: 199 IGYKTAALLLQEYGNLENILINASR 223
           +G  TA  +++ Y  +++ILI   R
Sbjct: 235 VGVVTAMKIVKRYSEMKDILIQIER 259


>gi|217960685|ref|YP_002339249.1| molybdate metabolism regulator [Bacillus cereus AH187]
 gi|217064328|gb|ACJ78578.1| molybdate metabolism regulator [Bacillus cereus AH187]
          Length = 1139

 Score = 38.1 bits (87), Expect = 8.5,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 40/227 (17%)

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-----EKLLHVYERLDKPMIDV 579
           KS++P+D++      ++    S+ + + +  L+          E+ LH    L+K  + +
Sbjct: 102 KSALPLDQL-VVIACKYLTNISSYVNEAYSFLKELTKENPNYIERQLHTL--LNKQQLSL 158

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +  M     ++D +     S+ + + L    E I +L+GEK                   
Sbjct: 159 LLVM----FEVDYERFHTYSSLLEERLKEHAEFILNLNGEK------------------- 195

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNP--IIKNILEWRQLSKIKSTYADSLPN-----HI 692
                  T ++     D E    G+ P  I + +    + S +   Y + L        I
Sbjct: 196 --EKIEATERYIKDESDRELFLGGNLPDYIWRLLFHVHKYSNVARRYVEILAKKNVWGFI 253

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           N  T  V    +         +  +     I             F +
Sbjct: 254 NHATCYVCQTLNQPQNYKRTGSVNKKTYNEIQSFCKQFWISEERFFA 300


>gi|315080608|gb|EFT52584.1| 3'-5' exonuclease [Propionibacterium acnes HL078PA1]
          Length = 412

 Score = 38.1 bits (87), Expect = 8.6,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 6/173 (3%)

Query: 453 LKKFFEN-EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQK 511
           LK   +       I H    D   L   G+      D  L S +L+       +  + ++
Sbjct: 80  LKPLAKALAGTQWILHAATQDMPCLAMDGLRPDDLFDTELASRLLN--LPRVSLGPMVER 137

Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
           +   T   +LK   +S    +      Q +A  +  ++  L   +   L          +
Sbjct: 138 YCGVT---LLKEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQ 194

Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624
               +++V + +      ID    +++S     +  +  +  +DL   + NL+
Sbjct: 195 EFAHLVEVAADLPSEEPGIDPKRWRKLSHIGDIHSRAGLQLAHDLWLARENLA 247


>gi|222096741|ref|YP_002530798.1| molybdate metabolism regulator [Bacillus cereus Q1]
 gi|221240799|gb|ACM13509.1| Molybdate metabolism regulator [Bacillus cereus Q1]
          Length = 1139

 Score = 38.1 bits (87), Expect = 8.6,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 40/227 (17%)

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-----EKLLHVYERLDKPMIDV 579
           KS++P+D++      ++    S+ + + +  L+          E+ LH    L+K  + +
Sbjct: 102 KSALPLDQL-VVIACKYLTNISSYVNEAYSFLKELTKENPNYIERQLHTL--LNKQQLSL 158

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +  M     ++D +     S+ + + L    E I +L+GEK                   
Sbjct: 159 LLVM----FEVDYERFHTYSSLLEERLKEHAEFILNLNGEK------------------- 195

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNP--IIKNILEWRQLSKIKSTYADSLPN-----HI 692
                  T ++     D E    G+ P  I + +    + S +   Y + L        I
Sbjct: 196 --EKIEATERYIKDESDRELFLGGNLPDYIWRLLFHVHKYSNVARRYVEILAKKNVWGFI 253

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           N  T  V    +         +  +     I             F +
Sbjct: 254 NHATCYVCQTLNQPQNYKRTGSVNKKTYNEIQSFCKQFWISEERFFA 300


>gi|297581761|ref|ZP_06943683.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534168|gb|EFH73007.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 209

 Score = 38.1 bits (87), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 17/124 (13%)

Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDDTSFKVETI 427
            Q+  +        S    T ++D   ++ + IA         I++   +          
Sbjct: 18  YQRLFETARHHEYVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLD 77

Query: 428 FIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVL-----HRYGI 481
              + +H  +     + L+ KE L  L +F  N     +G++I+YDK +L        G 
Sbjct: 78  SGSVRIHRIRHQDLHDGLSEKEALIQLIEFIGN--RPLVGYHIRYDKTILDIACRKHLGF 135

Query: 482 SMRG 485
            +  
Sbjct: 136 PLPN 139


>gi|46190895|ref|ZP_00206604.1| COG1949: Oligoribonuclease (3'->5' exoribonuclease)
           [Bifidobacterium longum DJO10A]
 gi|189440035|ref|YP_001955116.1| Oligoribonuclease [Bifidobacterium longum DJO10A]
 gi|189428470|gb|ACD98618.1| Oligoribonuclease [Bifidobacterium longum DJO10A]
          Length = 214

 Score = 38.1 bits (87), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 14/161 (8%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT-SFKVETIFIDLSVHTSQDSTGK 442
            +          T  +D    + + + +   D K +T    +  I    +V    +    
Sbjct: 21  AKPHMLLWIDTETTGLDPNQCELLEVGMQVTDLKAETRGGSLHLIVHPDNVRNWANHPEM 80

Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502
               +  L+            K G++ K+         +++  F +  L  Y L    ++
Sbjct: 81  LKAYEMHLAN-GLMLACAEAPKTGYDYKHTA-------LNIHEFLNDQLSQYTLHPAGTN 132

Query: 503 HD-----IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538
            D     +     + L +   + L  RK  +   +++D  +
Sbjct: 133 VDFDLRQLDVHLSRHLEHPITQGLHHRKLDLTSFRLADQAI 173


>gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
 gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
          Length = 928

 Score = 38.1 bits (87), Expect = 8.7,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 53/148 (35%), Gaps = 14/148 (9%)

Query: 384 LETIGSASFKIITDTMDA-FHSKPIAIAISTLDQKD----DTSFKVETIFIDLSVHTSQD 438
           ++        + T    A    + I  A   ++         +F      I   +     
Sbjct: 1   MKQKRYIVVDLETTGNQASRDDRIIQFAACFVESGKRLETYATFLNPEKPIPAFIQELTG 60

Query: 439 STGKNTLTKEILSYLKKFFEN--EHFLKIGHNIKYDKLVL----HRYGISMRGFE--DIM 490
            + K+     +   +     N  E  + + HN+ +D   L    +R GIS+   +  D +
Sbjct: 61  ISPKDVRDAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMNRAGISLGKMKKLDTV 120

Query: 491 LMSYVLDSGRSSHDIASIAQKW-LSYTR 517
            ++ ++  G  S+ +  ++ ++ L + +
Sbjct: 121 ELARIMYPGIDSYKLQDLSDEFGLGHDK 148


>gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
 gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
          Length = 267

 Score = 38.1 bits (87), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 14/138 (10%)

Query: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK----VETIFIDLSVHTSQDS 439
            +        I T  +     + I +A+  L+    T F+       +        +   
Sbjct: 84  AQGEAVVVLDIETTGLSPTDHEIIELALIRLENGRRTVFERLVNPGVLIPPFISRLTGIR 143

Query: 440 TGKNTLTKEILSYLK---KFFENEHFLKIGHNIKYDKLVL----HRYGISM-RGFEDIML 491
           +       +I + L+      +N     I  N  +D   L     R G  +     D + 
Sbjct: 144 SQDVRDAADIYTVLEEAWPLLDNATL--IIQNASFDLGFLQPRFKRLGYRLDNPVVDTIH 201

Query: 492 MSYVLDSGRSSHDIASIA 509
            +     G +   + S+A
Sbjct: 202 WARKALPGLTKRGLDSLA 219


>gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750]
 gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750]
          Length = 233

 Score = 38.1 bits (87), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--------SQDST 440
             +  I T  ++    + I + ++ ++    T      ++  +SV            +  
Sbjct: 5   YVALDIETTGLNPAVDRIIEVGMARVEDGQITQKYSTLVYPGISVSERITELTGIHNEEL 64

Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH----RYGISMR--GFEDIMLMSY 494
                 ++I+  + +F  +  +  +GHN+ +D   L       G+++   G + + L   
Sbjct: 65  TGKPRIEDIIGEITEFIGD--WPVLGHNVIFDFSFLKKAAVNNGLTINDDGIDTLKLARR 122

Query: 495 VLDSGRSSHDIASIAQKW 512
           +L        ++ + Q +
Sbjct: 123 IL-PEVEHKSLSFLCQYF 139


>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
 gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
          Length = 1446

 Score = 38.1 bits (87), Expect = 8.7,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 73/233 (31%), Gaps = 42/233 (18%)

Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI---AIAIST 413
              +  + +  Y  + N        ++LE      F + T  +     + I    + I  
Sbjct: 370 YGCEMLVADSKYHIVYNNDH-----RRLEDATFVVFDLETTGLSNTRDEIIEFGGVKIKN 424

Query: 414 LDQKDDTSFKVE-----TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468
            ++       +         I    H +Q+        ++ L  L +F  +   + + HN
Sbjct: 425 REEVGRLQMFINPKRTIPAHISNLTHITQNDVDCAKPIEDALDELLEFIGD--SILVAHN 482

Query: 469 IKYDKLVLH-------RYGISMRGFEDIMLMSYVLDSGR-SSHDIASIAQKWLSYTRKEI 520
             +D   ++       R  ++     D + +SY +        ++ S+ + +        
Sbjct: 483 ATFDVGFMNAACRKTGRDELT-NPVIDTLPLSYAMLPDEQKRFNLGSVCRHYRVSY---- 537

Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573
                         D +    A  +++V+ Q+   +  +L  +  L     ++
Sbjct: 538 --------------DGEGAHRADYDADVLSQVMYNMMNQLGHDATLDTLMDME 576


>gi|217972253|ref|YP_002357004.1| 3'-5' exonuclease [Shewanella baltica OS223]
 gi|217497388|gb|ACK45581.1| 3'-5' exonuclease [Shewanella baltica OS223]
          Length = 320

 Score = 38.1 bits (87), Expect = 8.7,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 20/125 (16%)

Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424
              + ++V   +    V +L+      F   T    A   + +   +S +      +   
Sbjct: 113 QQIHIEVVQPSEFDAVVARLQAEQVLGFDTETR---ASFERGVQHPLSLIQIATADACY- 168

Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISM 483
                            ++ +  E  + LK   E+E+ LK+G  ++ D   L R  GI++
Sbjct: 169 ---------------LFQHAILGEQFTQLKTVLEDENILKVGVGLRSDAQALKRQWGINV 213

Query: 484 RGFED 488
               D
Sbjct: 214 TSKLD 218


>gi|262405023|ref|ZP_06081575.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262348862|gb|EEY98003.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 209

 Score = 38.1 bits (87), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA---------ISTLDQKDD 419
              +     Q            S    T ++D   ++ + IA         +++   +  
Sbjct: 10  HTKLKESPYQALFNTAHHQEYVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVR 69

Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476
                      + +H  +    ++ L+ KE L  L  F  N     +G++I+YDK +L  
Sbjct: 70  LCAPQSLDSGSVRIHKIRHQDLQDGLSEKEALILLIDFIGN--RPLVGYHIRYDKTILDI 127

Query: 477 ---HRYGISMRG 485
                 G  +  
Sbjct: 128 ACRKHLGFPLPN 139


>gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 1517

 Score = 37.7 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 96/299 (32%), Gaps = 43/299 (14%)

Query: 261 HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL------DINTTENKGI 314
            + +E+ + P   +FL+      ++ +    YD     +E   L      +    +    
Sbjct: 340 KIFVEEEDLPEARAFLQ--VGKGILAKGMIEYDSFDRELELSHLSGIKKYEFQKKKRTDS 397

Query: 315 AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374
           A E  ++     K S    +SD    I++  +     +            + +       
Sbjct: 398 AKEKRVELHLHTKMSDMDGVSDVNDYIDTALSFGMDAMAITDHGVVQAFPDAASHLKKLG 457

Query: 375 KDIQ---------QWVQKLETI-----------GSASFKIITDTMDAFHSKPIAI-AIST 413
           K+             V  L+TI            +  F I T        K I I A+  
Sbjct: 458 KERDFKLIYGLEGYLVDDLKTIVQRDRGQELFSETVVFDIETTGFHPQTDKIIEIGAVKL 517

Query: 414 LDQKDDTSFKVETIFI-DLSVHTSQDSTGKNTLT---KEILSYLKKFFE-NEHFLKIGHN 468
            + K      V       +    +Q ++  +++    + I   L +F       + + HN
Sbjct: 518 REGKICDRMDVFVNPEIPIPFRITQLTSIDDSMVIGERTIEELLPEFLSFCGDAVIVAHN 577

Query: 469 IKYDKLVLH----RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK----WLSYTRK 518
             +D   +     R G+S      D + +S +L    +   + ++A++     L++ R 
Sbjct: 578 ADFDTGFIRENARRLGLSYDPTVVDTVGLSRLLLPKLNRFKLDTVAKELGISLLNHHRA 636


>gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score = 37.7 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE-ITTASQIIVH 946
           +   +Q ++ D+   AM  +  +         +++ IHDE V + P +  + T  +I+  
Sbjct: 17  VENIVQATSRDLLAGAMRRLETA------GNPVVMHIHDEAVIDAPTDRSLDTIVKIMTE 70

Query: 947 S 947
            
Sbjct: 71  V 71


>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1401

 Score = 37.7 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 63/195 (32%), Gaps = 32/195 (16%)

Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS-QDST 440
            +++      F + T  ++      I I    +   +  +     I ID +V     + T
Sbjct: 381 AEIKQTEFVVFDLETTGLNPSQHDIIEIGAVKIKAGEKIAEFETFIDIDKNVPAKITEIT 440

Query: 441 GKNTLTKEILSYLKKFFEN-----EHFLKIGHNIKYDK----LVLHRYGISMRGFE--DI 489
           G NT        LK   E         + + HN  +D       L +  I+ + +   D 
Sbjct: 441 GINTSMLTGAPKLKAAIERFIDFIGDGVLVAHNADFDYGFLRTALQKLEINRKEYTVLDT 500

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + +S  L     ++ + ++A+ + S    +                      A+ +++  
Sbjct: 501 LALSRALIKDSKNYKLNTLAE-YFSVELDD-------------------HHRALADADAT 540

Query: 550 LQLWLLLRPKLIVEK 564
            ++   L   +  + 
Sbjct: 541 AEILKKLLAIIEKDD 555


>gi|222085490|ref|YP_002544020.1| ribonuclease D [Agrobacterium radiobacter K84]
 gi|221722938|gb|ACM26094.1| ribonuclease D [Agrobacterium radiobacter K84]
          Length = 381

 Score = 37.7 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 65/198 (32%), Gaps = 32/198 (16%)

Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430
           I  T  ++   Q+L      +          F  +   I ++        S   E +   
Sbjct: 2   IETTAQLEAACQELAKSEFITIDTEFLRETTFWPELCLIQMA--------SPTTEVLVDP 53

Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFE---NEHFLKIGHNIKYDKLVLHRYG-ISMRGF 486
           L+                    LK FFE   N   +K+ H  + D  ++   G +     
Sbjct: 54  LAKGLD----------------LKPFFELMANTAVMKVFHAARQDIEIIFNRGNLIPHPI 97

Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546
            D  + + V   G S      +  +  +    +I KS + +    +    +  ++A+ + 
Sbjct: 98  FDTQVAAMVCGFGDSV-SYDQLVSRIKNI---QIDKSSRFTDWSRRPLSEKQLDYALADV 153

Query: 547 NVILQLWLLLRPKLIVEK 564
             +  ++L L+ +L  E 
Sbjct: 154 THLRDVYLSLKEQLEREG 171


>gi|300717019|ref|YP_003741822.1| ribonuclease D [Erwinia billingiae Eb661]
 gi|299062855|emb|CAX59975.1| Ribonuclease D [Erwinia billingiae Eb661]
          Length = 373

 Score = 37.7 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 22/198 (11%), Positives = 57/198 (28%), Gaps = 29/198 (14%)

Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426
           +YT I   + + +         + +          ++     I +   +           
Sbjct: 2   NYTMITTNEALAELCLTARQFPALALDTEFVRTRTYYPGLGLIQMYDGENI--------A 53

Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG 485
           +   L +                 +  +    +E  +K  H    D ++ LH Y +    
Sbjct: 54  LIDPLPITEW--------------APFRDLLLDEKVIKFLHAGSEDLEVFLHEYDVLPVP 99

Query: 486 FEDIM-LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544
             D   L ++       S   A+I + +       + KS   +  + +    +  ++A  
Sbjct: 100 MIDTQILAAFTGRP--LSCGFATIVESFTGIA---LDKSESRTDWLARPLTEKQCQYAAA 154

Query: 545 NSNVILQLWLLLRPKLIV 562
           +   +L +   L  +   
Sbjct: 155 DVFYLLPIAHKLLAEAEE 172


>gi|229197384|ref|ZP_04324111.1| Molybdate metabolism regulator [Bacillus cereus m1293]
 gi|228586008|gb|EEK44099.1| Molybdate metabolism regulator [Bacillus cereus m1293]
          Length = 1126

 Score = 37.7 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 40/227 (17%)

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-----EKLLHVYERLDKPMIDV 579
           KS++P+D++      ++    S+ + + +  L+          E+ LH    L+K  + +
Sbjct: 89  KSALPLDQL-VVIACKYLTNISSYVNEAYSFLKELTKENPNYIERQLHTL--LNKQQLSL 145

Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639
           +  M     ++D +     S+ + + L    E I +L+GEK                   
Sbjct: 146 LLVM----FEVDYERFHTYSSLLEERLKEHAEFILNLNGEK------------------- 182

Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNP--IIKNILEWRQLSKIKSTYADSLPN-----HI 692
                  T ++     D E    G+ P  I + +    + S +   Y + L        I
Sbjct: 183 --EKIEATERYIKDESDRELFLGGNLPDYIWRLLFHVHKYSNVARRYVEILAKKNVWGFI 240

Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739
           N  T  V    +         +  +     I             F +
Sbjct: 241 NHATCYVCQTLNQPQNYKRTGSVNKKTYNEIQSFCKQFWISEERFFA 287


>gi|291456557|ref|ZP_06595947.1| ribonuclease D [Bifidobacterium breve DSM 20213]
 gi|291381834|gb|EFE89352.1| ribonuclease D [Bifidobacterium breve DSM 20213]
          Length = 433

 Score = 37.7 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524
           I H+   D       G+  +   D  + + +L  G     +A++ + +L  T   + K  
Sbjct: 99  ILHDSLMDLPGFADLGLQPKALFDTEIAARLL--GLHRFGLAAVTEHYLGIT---LAKEH 153

Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571
            ++    +      + +A  +  V+++L  L+R  L         E 
Sbjct: 154 SAADWSYRPLPRDWRNYAALDVEVLIELENLMRRDLRAAGKDEWAEE 200


>gi|242025142|ref|XP_002432985.1| myosin-18A, putative [Pediculus humanus corporis]
 gi|212518494|gb|EEB20247.1| myosin-18A, putative [Pediculus humanus corporis]
          Length = 1601

 Score = 37.7 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 148/419 (35%), Gaps = 42/419 (10%)

Query: 216  NILINASRIKQKKRRENILEYAETARLS---RKLVMLRTDVPITIPLEHLILEDC--NGP 270
             +L      + +K  + I+ +    R     +KL  L+        ++ L +     N  
Sbjct: 803  GVLAQLESQRDEKLADLIIRFQSRCRGYIARKKLAKLK--------IQDLAVRCIQRNVR 854

Query: 271  RLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ 330
            +L+   +   + +L  +V    +      E           K +  + E +R+     + 
Sbjct: 855  KLMQV-REWPWWRLYVKVTPILNVHRTEEELTAKVQELETVKSLLEKVESERNQLKLEND 913

Query: 331  F--SSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN-NDSYTKIVNTKDIQQWVQKLETI 387
               + LS+ T  ++ E+T   L  ERL+  +   +      ++I N K   Q   +   +
Sbjct: 914  KLETKLSEMTMDLSEERTAGALQAERLEAETAERVRLEQELSQIQNEKKNLQQASERLEM 973

Query: 388  GSASFKIITDTMDAFHSKPI---AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444
                 +   + +             A    ++ + T  ++E     L      D      
Sbjct: 974  ELFYARADVNGLSESEGDLEDGGGDAALYKNKCERTMRELEFTRRRLQQQHEDDLEQLVG 1033

Query: 445  LTKEILSYLKKFFEN-EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSH 503
            L K++   L   +E  E   ++    K     L           D+ L   +L+   S +
Sbjct: 1034 LKKQLEKKLADAYEEVEEQRQVAGQWKRKVQKLQSE------MNDLRL---LLEEQSSRN 1084

Query: 504  DIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560
            ++    Q+         +E L+S K+    +++S  +   +A + S         L  +L
Sbjct: 1085 NLLEKKQRKFDSEIQLLQEELRSEKNQK--ERLSREKEMAYAEKYSMEQNLSSFRLELEL 1142

Query: 561  IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619
              EKLL + + L++      S+ EIT        L++   ++   L   EE + +L+G+
Sbjct: 1143 KDEKLLSLTQELEEFSRGGGSEQEIT-------QLRKAKHDLEIKLKEQEEELDELAGQ 1194


>gi|167767436|ref|ZP_02439489.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1]
 gi|167710728|gb|EDS21307.1| hypothetical protein CLOSS21_01955 [Clostridium sp. SS2/1]
 gi|291558729|emb|CBL37529.1| exonuclease, DNA polymerase III, epsilon subunit family
           [butyrate-producing bacterium SSC/2]
          Length = 235

 Score = 37.7 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 80/249 (32%), Gaps = 52/249 (20%)

Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--------SQDS 439
              +F + T  +     + I I    +     +      I  ++ V          S+D 
Sbjct: 3   DYVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGKYNCIIHPEIEVSDFIINLTGISRDM 62

Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH------RYGISMRGFEDIMLMS 493
             K    KE +    +F  +     +GHN+ +D   +       +Y     G + + +  
Sbjct: 63  LRKGIPLKEGVEEFLEF--SGDLPILGHNVMFDYKFMKMAAASFKYPFEKTGVDTLKVAR 120

Query: 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553
            +L +G  +  + ++   +                       +Q    A +++     ++
Sbjct: 121 KLL-TGLENKKLETLCAHYHYV--------------------NQAAHRAYDDALATAVVF 159

Query: 554 LLLR------PKLIVEKLLHVYERLDKPM-------IDVVSQMEITGIQIDQDLLKQVSA 600
             ++       ++   + L    + ++P        ++ + +    G  +D D + Q   
Sbjct: 160 EQMKKEFPTEEEIFQPQQLQFKVKKERPATAKQKKYLENLMKYHAIGECLDIDQMTQ--R 217

Query: 601 EISKNLLSL 609
           E SK +  +
Sbjct: 218 EASKKIDHI 226


>gi|195626632|gb|ACG35146.1| Werner syndrome ATP-dependent helicase [Zea mays]
          Length = 303

 Score = 37.7 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 89/286 (31%), Gaps = 44/286 (15%)

Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351
           +  DAA  E    +         A    +   T+   S    L    + ++S  TP    
Sbjct: 27  HWDDAAEAELQAFEAAYASASASAKRRRLPDWTSPSPSPSYRLHHSQNPVSSGSTPSWTL 86

Query: 352 LERLQK------LSQYPINNDSYTKIVNTKDIQQ------WVQKLETIGSAS--FKIITD 397
                +        Q   +         T+  +        +++++T G  S  F +   
Sbjct: 87  TPHTPQDNVRARRQQISFSGKIVYCRTPTEAEKAATDILLKIERMKTPGQVSLGFDLEWR 146

Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457
                   P  +A+  L  +    + +      +                     LK   
Sbjct: 147 PFPRRGEPPCKVAVMQLCMEKTLCYVLHIAHSGVPP------------------ILKTLL 188

Query: 458 ENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLD---SGRSSHDIASIAQKWL 513
           E+   +K+G  I  D + + + Y + ++   D   +S + +   +      +AS+ +   
Sbjct: 189 EDSSSIKVGICIDNDARKMFNDYDVCVQPLMD---LSTLANVKLASPKRWSLASLTE--- 242

Query: 514 SYTRKEILKSR--KSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557
             T KE+ K    +       +   Q  ++A  ++ +   L+  L+
Sbjct: 243 MITCKELPKPSNIRMGNWEADVLSKQQLQYAATDAYISWYLYEALQ 288


>gi|332157650|ref|YP_004422929.1| flap endonuclease-1 [Pyrococcus sp. NA2]
 gi|331033113|gb|AEC50925.1| flap endonuclease-1 [Pyrococcus sp. NA2]
          Length = 342

 Score = 37.7 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 77/249 (30%), Gaps = 68/249 (27%)

Query: 10  VDGSSFIYRAFYATPLLSRKHDGLP--------VNAIAG-FCNMLWKLLQNSRKESIASH 60
           +D  +    A Y      R+ DG P         + ++G F   +  +    +       
Sbjct: 26  IDALN----AIYQFLSTIRQRDGTPLMDSKGRMTSHLSGLFYRTINLMEAGIKPVY---- 77

Query: 61  FAVIFDYPAVTFRNEIYPDYKANRPKIP----EML----------LPQL---------PL 97
              +FD     F+ +     +  R +      E L            Q            
Sbjct: 78  ---VFDGKPPEFKKKELEKRREAREEAEVKWREALARGDIEEARKYAQRATKVNEMLIED 134

Query: 98  VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII-STDKDLMQLVSPTTCLYD 156
            +   Q  GIP ++    E +   A            V    S D D +   +P      
Sbjct: 135 AKQLLQLMGIPIVQAPS-EGEAQAAYMAMKG-----DVYASASQDYDSLLFGAPRLVRNL 188

Query: 157 T---------------VKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG-IPGIG 200
           T               VK E I +E V+ +  I  EK++ L  L G   D  PG I GIG
Sbjct: 189 TITGKRKMPGKDVYVEVKPELIILEDVLNQLKITREKLIELAILVG--TDYNPGGIKGIG 246

Query: 201 YKTAALLLQ 209
            K A  +++
Sbjct: 247 PKKALEIVK 255


>gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
 gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
          Length = 234

 Score = 37.7 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 388 GSASFKIITDTMDAFHSKPIAI-AISTLDQKDDTSF----KVETIFIDLSVHTSQDSTGK 442
               F + T  +D  +   I I A+   + K    F    K +     +    +  +   
Sbjct: 4   TYVVFDLETTGLDVENDNIIEIGALKVREGKVTDRFMEFLKPDMPISPMITGITGITNEM 63

Query: 443 NTLTKEILSYLKKFFE-NEHFLKIGHNIKYDKLVLHRY------GISMRGFEDIMLMSYV 495
               ++  + ++ F    E  + +GHNI +D   + +Y          +G  D + ++  
Sbjct: 64  VKNARDTKTVIRDFVNFCEDHILVGHNIMFDYKFMKKYASQYGESFEKKGI-DTLKIARK 122

Query: 496 LDSGRSSHDIASIAQKW 512
           +     S  + ++ + +
Sbjct: 123 VHKDLESKSLEALCEHY 139


>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 386

 Score = 37.7 bits (86), Expect = 9.8,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 55/187 (29%), Gaps = 30/187 (16%)

Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET-IFIDLSVHTSQD 438
             +           + T        +   + +  +     T +         +     Q 
Sbjct: 6   LAEPALAEPIVFVDLETTGGSTNEHRITEVGVVEVGPTGVTRWSSLVDPQQPIPSFIQQL 65

Query: 439 STGKNTLTK--EILSYLKK-FFEN-EHFLKIGHNIKYDKLVLH----RYGISMRG-FEDI 489
           +   N + +       +    F   +  L + HN  +D+  L     R GIS        
Sbjct: 66  TGITNAMVRGAPTFEAIAPELFARLDGKLFVAHNASFDRGFLRGEFRRVGISFDPDVLCT 125

Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549
           + +S  L      H + ++ ++              + +P D+         A+ ++++I
Sbjct: 126 VRLSRALFPSEKRHGLDALVERH-------------ALVPSDR-------HRALADADLI 165

Query: 550 LQLWLLL 556
            Q W  L
Sbjct: 166 WQFWQRL 172


>gi|171780060|ref|ZP_02920964.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281408|gb|EDT46843.1| hypothetical protein STRINF_01848 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 827

 Score = 37.7 bits (86), Expect = 9.8,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 60/193 (31%), Gaps = 34/193 (17%)

Query: 381 VQKLETIGSASFKIITDTMDAFHSKP-IAIAISTLDQKDDTSFKVETIFIDLSVHT---- 435
           + ++ +   A   +      A      + I I   DQ   T          L+ H     
Sbjct: 1   MMQVNSQKYAVVDLEATGAHAMAEIIQVGIVIIENDQIVKTYQTDVNPHEALTEHIIHLT 60

Query: 436 --SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR----YGISMR-GFED 488
             + +   K     ++   +     +   + + HN+K+D  +L       G  +R    D
Sbjct: 61  GITDEQLAKAPDFSKVAQEIYHLISD--CVFVAHNVKFDANLLAEKLFLEGYELRTPLVD 118

Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548
            + +S V       + +  +A                    + ++  +     AI ++  
Sbjct: 119 TVELSQVFYPTLEKYTLGHLA-------------------DVLQLDLTDAHT-AISDAYA 158

Query: 549 ILQLWLLLRPKLI 561
             QL L L+ K+ 
Sbjct: 159 TAQLLLKLKEKME 171


>gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
 gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
          Length = 230

 Score = 37.7 bits (86), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 20/138 (14%)

Query: 392 FKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450
               T  +DA    + + I           + +   ++I+      Q++   + L+ E L
Sbjct: 6   LDTETTGLDALRGDRLVEIG-CVEMFNHMPTGQTYHVYINPERDMPQEAFAVHGLSSEFL 64

Query: 451 SYLKKFF----EN-----EHFLKIGHNIKYDKLVL-------HRYGISMRGFEDIMLMSY 494
           S  K  F    E+          I HN  +D   +        R  I      D +L++ 
Sbjct: 65  SD-KPLFAAVAEDFLTFIGDAPLIIHNASFDIGFINMELERVKRAAIPRERLVDTLLLAR 123

Query: 495 VLDSGRSSHDIASIAQKW 512
               G S+  +  +  ++
Sbjct: 124 RKHPGVSNR-LDDLCSRY 140


>gi|307578800|gb|ADN62769.1| ribonuclease D [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 339

 Score = 37.7 bits (86), Expect = 10.0,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509
             L  +    + +KI H+   D +      G+  R   D  + +  L           + 
Sbjct: 38  DALGLWLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGA-ALTGLGGGMGYQKLV 96

Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562
            K  +    E+ K    S  + +       ++A  +   +  L   L  +L  
Sbjct: 97  AKVTNV---ELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAE 146


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.136    0.377 

Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,320,150,921
Number of Sequences: 14124377
Number of extensions: 684490235
Number of successful extensions: 2075502
Number of sequences better than 10.0: 8687
Number of HSP's better than 10.0 without gapping: 9217
Number of HSP's successfully gapped in prelim test: 4339
Number of HSP's that attempted gapping in prelim test: 2007342
Number of HSP's gapped (non-prelim): 20653
length of query: 976
length of database: 4,842,793,630
effective HSP length: 149
effective length of query: 827
effective length of database: 2,738,261,457
effective search space: 2264542224939
effective search space used: 2264542224939
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 87 (38.1 bits)